Gene Page: SNAP29
Summary ?
| GeneID | 9342 |
| Symbol | SNAP29 |
| Synonyms | CEDNIK|SNAP-29 |
| Description | synaptosome associated protein 29kDa |
| Reference | MIM:604202|HGNC:HGNC:11133|Ensembl:ENSG00000099940|HPRD:11968|Vega:OTTHUMG00000150765 |
| Gene type | protein-coding |
| Map location | 22q11.21 |
| Pascal p-value | 0.23 |
| Sherlock p-value | 0.271 |
| Fetal beta | -0.705 |
| eGene | Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Nucleus accumbens basal ganglia Putamen basal ganglia Meta |
| Support | EXOCYTOSIS |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CNV:YES | Copy number variation studies | Manual curation | |
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
| Association | A combined odds ratio method (Sun et al. 2008), association studies | 2 | Link to SZGene |
| GSMA_I | Genome scan meta-analysis | Psr: 0.031 | |
| Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | Click to show details |
| GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs5759874 | 22 | 21017148 | SNAP29 | ENSG00000099940.7 | 5.33E-7 | 0 | -196623 | gtex_brain_putamen_basal |
| rs5759875 | 22 | 21017452 | SNAP29 | ENSG00000099940.7 | 5.354E-7 | 0 | -196319 | gtex_brain_putamen_basal |
| rs5996576 | 22 | 21020848 | SNAP29 | ENSG00000099940.7 | 2.492E-6 | 0 | -192923 | gtex_brain_putamen_basal |
| rs187299138 | 22 | 21022539 | SNAP29 | ENSG00000099940.7 | 9.988E-10 | 0 | -191232 | gtex_brain_putamen_basal |
| rs146460014 | 22 | 21040007 | SNAP29 | ENSG00000099940.7 | 4.798E-8 | 0 | -173764 | gtex_brain_putamen_basal |
| rs73159197 | 22 | 21040925 | SNAP29 | ENSG00000099940.7 | 4.975E-8 | 0 | -172846 | gtex_brain_putamen_basal |
| rs192565874 | 22 | 21042969 | SNAP29 | ENSG00000099940.7 | 4.233E-8 | 0 | -170802 | gtex_brain_putamen_basal |
| rs9624496 | 22 | 21043393 | SNAP29 | ENSG00000099940.7 | 4.06E-8 | 0 | -170378 | gtex_brain_putamen_basal |
| rs150713772 | 22 | 21045147 | SNAP29 | ENSG00000099940.7 | 3.275E-8 | 0 | -168624 | gtex_brain_putamen_basal |
| rs4052261 | 22 | 21051683 | SNAP29 | ENSG00000099940.7 | 4.825E-7 | 0 | -162088 | gtex_brain_putamen_basal |
| rs201568132 | 22 | 21051843 | SNAP29 | ENSG00000099940.7 | 8.551E-9 | 0 | -161928 | gtex_brain_putamen_basal |
| rs5751757 | 22 | 21052990 | SNAP29 | ENSG00000099940.7 | 8.057E-9 | 0 | -160781 | gtex_brain_putamen_basal |
| rs41307243 | 22 | 21053952 | SNAP29 | ENSG00000099940.7 | 9.695E-9 | 0 | -159819 | gtex_brain_putamen_basal |
| rs5760127 | 22 | 21059531 | SNAP29 | ENSG00000099940.7 | 2.197E-7 | 0 | -154240 | gtex_brain_putamen_basal |
| rs13471 | 22 | 21062268 | SNAP29 | ENSG00000099940.7 | 1.207E-7 | 0 | -151503 | gtex_brain_putamen_basal |
| rs5760138 | 22 | 21062697 | SNAP29 | ENSG00000099940.7 | 1.162E-7 | 0 | -151074 | gtex_brain_putamen_basal |
| rs146546335 | 22 | 21064120 | SNAP29 | ENSG00000099940.7 | 5.911E-7 | 0 | -149651 | gtex_brain_putamen_basal |
| rs113356965 | 22 | 21065201 | SNAP29 | ENSG00000099940.7 | 1.332E-8 | 0 | -148570 | gtex_brain_putamen_basal |
| rs5996653 | 22 | 21065550 | SNAP29 | ENSG00000099940.7 | 4.835E-9 | 0 | -148221 | gtex_brain_putamen_basal |
| rs73159200 | 22 | 21067984 | SNAP29 | ENSG00000099940.7 | 1.281E-8 | 0 | -145787 | gtex_brain_putamen_basal |
| rs148458689 | 22 | 21068025 | SNAP29 | ENSG00000099940.7 | 1.281E-8 | 0 | -145746 | gtex_brain_putamen_basal |
| rs12053807 | 22 | 21068130 | SNAP29 | ENSG00000099940.7 | 1.281E-8 | 0 | -145641 | gtex_brain_putamen_basal |
| rs5760167 | 22 | 21068850 | SNAP29 | ENSG00000099940.7 | 1.004E-8 | 0 | -144921 | gtex_brain_putamen_basal |
| rs5760171 | 22 | 21069951 | SNAP29 | ENSG00000099940.7 | 1.03E-8 | 0 | -143820 | gtex_brain_putamen_basal |
| rs73159202 | 22 | 21073281 | SNAP29 | ENSG00000099940.7 | 1.711E-8 | 0 | -140490 | gtex_brain_putamen_basal |
| rs6004060 | 22 | 21080404 | SNAP29 | ENSG00000099940.7 | 2.166E-8 | 0 | -133367 | gtex_brain_putamen_basal |
| rs5760207 | 22 | 21080548 | SNAP29 | ENSG00000099940.7 | 1.317E-8 | 0 | -133223 | gtex_brain_putamen_basal |
| rs113569556 | 22 | 21090646 | SNAP29 | ENSG00000099940.7 | 1.894E-8 | 0 | -123125 | gtex_brain_putamen_basal |
| rs111741125 | 22 | 21092217 | SNAP29 | ENSG00000099940.7 | 1.33E-8 | 0 | -121554 | gtex_brain_putamen_basal |
| rs6004102 | 22 | 21092244 | SNAP29 | ENSG00000099940.7 | 1.33E-8 | 0 | -121527 | gtex_brain_putamen_basal |
| rs112657540 | 22 | 21097805 | SNAP29 | ENSG00000099940.7 | 1.33E-8 | 0 | -115966 | gtex_brain_putamen_basal |
| . | 22 | 21102197 | SNAP29 | ENSG00000099940.7 | 1.359E-8 | 0 | -111574 | gtex_brain_putamen_basal |
| rs5760338 | 22 | 21102393 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -111378 | gtex_brain_putamen_basal |
| rs5760343 | 22 | 21102830 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -110941 | gtex_brain_putamen_basal |
| rs16988764 | 22 | 21105255 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -108516 | gtex_brain_putamen_basal |
| rs5751852 | 22 | 21106055 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -107716 | gtex_brain_putamen_basal |
| rs73160984 | 22 | 21106141 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -107630 | gtex_brain_putamen_basal |
| rs73160987 | 22 | 21106665 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -107106 | gtex_brain_putamen_basal |
| rs73160989 | 22 | 21107809 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -105962 | gtex_brain_putamen_basal |
| rs5760380 | 22 | 21108125 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -105646 | gtex_brain_putamen_basal |
| rs111712701 | 22 | 21109168 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -104603 | gtex_brain_putamen_basal |
| rs5760417 | 22 | 21113793 | SNAP29 | ENSG00000099940.7 | 1.41E-8 | 0 | -99978 | gtex_brain_putamen_basal |
| rs5751875 | 22 | 21114200 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -99571 | gtex_brain_putamen_basal |
| rs73160995 | 22 | 21115062 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -98709 | gtex_brain_putamen_basal |
| rs5760437 | 22 | 21116594 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -97177 | gtex_brain_putamen_basal |
| rs111346757 | 22 | 21117639 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -96132 | gtex_brain_putamen_basal |
| rs9917585 | 22 | 21118650 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -95121 | gtex_brain_putamen_basal |
| rs73161000 | 22 | 21119995 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -93776 | gtex_brain_putamen_basal |
| rs112472441 | 22 | 21122005 | SNAP29 | ENSG00000099940.7 | 1.089E-7 | 0 | -91766 | gtex_brain_putamen_basal |
| rs12053811 | 22 | 21125075 | SNAP29 | ENSG00000099940.7 | 1.118E-7 | 0 | -88696 | gtex_brain_putamen_basal |
| rs5751898 | 22 | 21127335 | SNAP29 | ENSG00000099940.7 | 1.392E-8 | 0 | -86436 | gtex_brain_putamen_basal |
| rs5760513 | 22 | 21132931 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -80840 | gtex_brain_putamen_basal |
| rs73162810 | 22 | 21136259 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -77512 | gtex_brain_putamen_basal |
| rs5760531 | 22 | 21136455 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -77316 | gtex_brain_putamen_basal |
| rs73162812 | 22 | 21137130 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -76641 | gtex_brain_putamen_basal |
| rs5751939 | 22 | 21139242 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -74529 | gtex_brain_putamen_basal |
| rs5751970 | 22 | 21145242 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -68529 | gtex_brain_putamen_basal |
| rs67843118 | 22 | 21145505 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -68266 | gtex_brain_putamen_basal |
| rs739523 | 22 | 21150704 | SNAP29 | ENSG00000099940.7 | 1.123E-7 | 0 | -63067 | gtex_brain_putamen_basal |
| rs5760678 | 22 | 21151157 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -62614 | gtex_brain_putamen_basal |
| rs5760688 | 22 | 21152568 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -61203 | gtex_brain_putamen_basal |
| rs5760697 | 22 | 21154750 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -59021 | gtex_brain_putamen_basal |
| rs5760715 | 22 | 21160111 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -53660 | gtex_brain_putamen_basal |
| rs73162819 | 22 | 21160945 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -52826 | gtex_brain_putamen_basal |
| rs5760728 | 22 | 21161564 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -52207 | gtex_brain_putamen_basal |
| rs5760765 | 22 | 21167184 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -46587 | gtex_brain_putamen_basal |
| rs5760772 | 22 | 21168756 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -45015 | gtex_brain_putamen_basal |
| rs73162825 | 22 | 21175309 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -38462 | gtex_brain_putamen_basal |
| rs5760822 | 22 | 21176629 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -37142 | gtex_brain_putamen_basal |
| rs5760858 | 22 | 21180811 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -32960 | gtex_brain_putamen_basal |
| rs361538 | 22 | 21183881 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -29890 | gtex_brain_putamen_basal |
| rs117022216 | 22 | 21185753 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -28018 | gtex_brain_putamen_basal |
| rs73162829 | 22 | 21186750 | SNAP29 | ENSG00000099940.7 | 1.12E-7 | 0 | -27021 | gtex_brain_putamen_basal |
| rs5760899 | 22 | 21188964 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -24807 | gtex_brain_putamen_basal |
| rs5752077 | 22 | 21189429 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -24342 | gtex_brain_putamen_basal |
| rs362223 | 22 | 21190377 | SNAP29 | ENSG00000099940.7 | 1.663E-8 | 0 | -23394 | gtex_brain_putamen_basal |
| rs5760910 | 22 | 21191242 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -22529 | gtex_brain_putamen_basal |
| rs5752086 | 22 | 21193365 | SNAP29 | ENSG00000099940.7 | 9.908E-9 | 0 | -20406 | gtex_brain_putamen_basal |
| . | 22 | 21198229 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -15542 | gtex_brain_putamen_basal |
| rs5760985 | 22 | 21199895 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -13876 | gtex_brain_putamen_basal |
| rs5760994 | 22 | 21201162 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -12609 | gtex_brain_putamen_basal |
| rs5761000 | 22 | 21202005 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -11766 | gtex_brain_putamen_basal |
| rs5752131 | 22 | 21203461 | SNAP29 | ENSG00000099940.7 | 5.283E-9 | 0 | -10310 | gtex_brain_putamen_basal |
| rs73162844 | 22 | 21211220 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -2551 | gtex_brain_putamen_basal |
| rs41281579 | 22 | 21211544 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | -2227 | gtex_brain_putamen_basal |
| rs112197871 | 22 | 21212716 | SNAP29 | ENSG00000099940.7 | 3.97E-8 | 0 | -1055 | gtex_brain_putamen_basal |
| rs10483104 | 22 | 21220733 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 6962 | gtex_brain_putamen_basal |
| rs5752165 | 22 | 21221305 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 7534 | gtex_brain_putamen_basal |
| rs200630117 | 22 | 21226537 | SNAP29 | ENSG00000099940.7 | 1.342E-7 | 0 | 12766 | gtex_brain_putamen_basal |
| rs16988883 | 22 | 21229564 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 15793 | gtex_brain_putamen_basal |
| rs5752191 | 22 | 21233549 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 19778 | gtex_brain_putamen_basal |
| . | 22 | 21235838 | SNAP29 | ENSG00000099940.7 | 1.118E-7 | 0 | 22067 | gtex_brain_putamen_basal |
| rs113543516 | 22 | 21240414 | SNAP29 | ENSG00000099940.7 | 1.385E-8 | 0 | 26643 | gtex_brain_putamen_basal |
| rs113768745 | 22 | 21241485 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 27714 | gtex_brain_putamen_basal |
| rs3171741 | 22 | 21242247 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 28476 | gtex_brain_putamen_basal |
| rs5752201 | 22 | 21244229 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 30458 | gtex_brain_putamen_basal |
| rs12163206 | 22 | 21246557 | SNAP29 | ENSG00000099940.7 | 1.118E-7 | 0 | 32786 | gtex_brain_putamen_basal |
| rs12162703 | 22 | 21246902 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 33131 | gtex_brain_putamen_basal |
| rs77948203 | 22 | 21249165 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 35394 | gtex_brain_putamen_basal |
| rs5761195 | 22 | 21249705 | SNAP29 | ENSG00000099940.7 | 1.118E-7 | 0 | 35934 | gtex_brain_putamen_basal |
| rs5761259 | 22 | 21252585 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 38814 | gtex_brain_putamen_basal |
| rs5752229 | 22 | 21254167 | SNAP29 | ENSG00000099940.7 | 1.352E-8 | 0 | 40396 | gtex_brain_putamen_basal |
| rs73162866 | 22 | 21255420 | SNAP29 | ENSG00000099940.7 | 1.368E-8 | 0 | 41649 | gtex_brain_putamen_basal |
| rs113217119 | 22 | 21255863 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 42092 | gtex_brain_putamen_basal |
| rs5761323 | 22 | 21263577 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 49806 | gtex_brain_putamen_basal |
| rs73162874 | 22 | 21268433 | SNAP29 | ENSG00000099940.7 | 1.118E-7 | 0 | 54662 | gtex_brain_putamen_basal |
| rs5761335 | 22 | 21268733 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 54962 | gtex_brain_putamen_basal |
| rs73162876 | 22 | 21273196 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 59425 | gtex_brain_putamen_basal |
| rs5752261 | 22 | 21275053 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 61282 | gtex_brain_putamen_basal |
| rs73162881 | 22 | 21278298 | SNAP29 | ENSG00000099940.7 | 1.395E-8 | 0 | 64527 | gtex_brain_putamen_basal |
| rs113257264 | 22 | 21281426 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 67655 | gtex_brain_putamen_basal |
| rs200567800 | 22 | 21286943 | SNAP29 | ENSG00000099940.7 | 1.123E-7 | 0 | 73172 | gtex_brain_putamen_basal |
| rs1978098 | 22 | 21288871 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 75100 | gtex_brain_putamen_basal |
| rs5761429 | 22 | 21293653 | SNAP29 | ENSG00000099940.7 | 6.918E-9 | 0 | 79882 | gtex_brain_putamen_basal |
| rs5761433 | 22 | 21294414 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 80643 | gtex_brain_putamen_basal |
| rs5761460 | 22 | 21297251 | SNAP29 | ENSG00000099940.7 | 1.118E-7 | 0 | 83480 | gtex_brain_putamen_basal |
| rs5761464 | 22 | 21298018 | SNAP29 | ENSG00000099940.7 | 1.123E-7 | 0 | 84247 | gtex_brain_putamen_basal |
| rs367989811 | 22 | 21298692 | SNAP29 | ENSG00000099940.7 | 1.364E-8 | 0 | 84921 | gtex_brain_putamen_basal |
| rs2023715 | 22 | 21300844 | SNAP29 | ENSG00000099940.7 | 2.426E-8 | 0 | 87073 | gtex_brain_putamen_basal |
| rs5761520 | 22 | 21312889 | SNAP29 | ENSG00000099940.7 | 1.782E-8 | 0 | 99118 | gtex_brain_putamen_basal |
| rs144554847 | 22 | 21313072 | SNAP29 | ENSG00000099940.7 | 2.066E-8 | 0 | 99301 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| MRPL21 | 0.86 | 0.82 |
| MRPL22 | 0.84 | 0.77 |
| SUCLG1 | 0.84 | 0.83 |
| HBXIP | 0.84 | 0.80 |
| NDUFA12 | 0.83 | 0.83 |
| PSMA6 | 0.82 | 0.79 |
| ATP5O | 0.82 | 0.84 |
| HAX1 | 0.82 | 0.79 |
| RBX1 | 0.82 | 0.82 |
| GTF3A | 0.81 | 0.76 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| MYH9 | -0.50 | -0.49 |
| TENC1 | -0.47 | -0.55 |
| SEMA3G | -0.47 | -0.51 |
| PEAR1 | -0.46 | -0.51 |
| DOCK6 | -0.46 | -0.52 |
| FAM38A | -0.45 | -0.53 |
| MMRN2 | -0.45 | -0.46 |
| MTSS1L | -0.45 | -0.49 |
| ENG | -0.45 | -0.49 |
| GPR124 | -0.44 | -0.49 |
Section III. Gene Ontology annotation
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|---|---|---|---|
| GO:0005484 | SNAP receptor activity | TAS | 10839363 | |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
| GO:0006944 | membrane fusion | TAS | 10839363 | |
| GO:0006903 | vesicle targeting | TAS | 9852078 | |
| GO:0006887 | exocytosis | TAS | 10839363 | |
| GO:0015031 | protein transport | IEA | - | |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
| GO:0019717 | synaptosome | IEA | Synap, Brain (GO term level: 7) | - |
| GO:0045202 | synapse | IEA | neuron, Synap, Neurotransmitter, Glial (GO term level: 2) | - |
| GO:0005737 | cytoplasm | IEA | - | |
| GO:0005886 | plasma membrane | TAS | 9852078 | |
| GO:0030054 | cell junction | IEA | - |
Section IV. Protein-protein interaction annotation
| Interactors | Aliases B | Official full name B | Experimental | Source | PubMed ID |
|---|---|---|---|---|---|
| AP2A1 | ADTAA | AP2-ALPHA | CLAPA1 | adaptor-related protein complex 2, alpha 1 subunit | - | HPRD | 11423532 |
| C1orf190 | FLJ25163 | chromosome 1 open reading frame 190 | Two-hybrid | BioGRID | 16189514 |
| CD7 | GP40 | LEU-9 | TP41 | Tp40 | CD7 molecule | - | HPRD | 9852078 |11423532 |
| EHD1 | FLJ42622 | FLJ44618 | H-PAST | HPAST1 | PAST | PAST1 | EH-domain containing 1 | EHD1 interacts with SNAP29. | BIND | 11423532 |
| EHD1 | FLJ42622 | FLJ44618 | H-PAST | HPAST1 | PAST | PAST1 | EH-domain containing 1 | - | HPRD,BioGRID | 11423532 |
| EHD3 | PAST3 | EH-domain containing 3 | EHD3 interacts with SNAP29. This interaction was modeled on a demonstrated interaction between mouse EHD3 and human SNAP29. | BIND | 11423532 |
| EHD3 | PAST3 | EH-domain containing 3 | Two-hybrid | BioGRID | 11423532 |
| ESR1 | DKFZp686N23123 | ER | ESR | ESRA | Era | NR3A1 | estrogen receptor 1 | ER interacts with SNAP29. | BIND | 16009131 |
| IGF1R | CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 | insulin-like growth factor 1 receptor | - | HPRD,BioGRID | 11423532 |
| SNAP29 | CEDNIK | FLJ21051 | SNAP-29 | synaptosomal-associated protein, 29kDa | SNAP29 homodimerzes. | BIND | 11423532 |
| SNAP29 | CEDNIK | FLJ21051 | SNAP-29 | synaptosomal-associated protein, 29kDa | Two-hybrid | BioGRID | 11423532 |
| STX12 | MGC51957 | STX13 | STX14 | syntaxin 12 | - | HPRD,BioGRID | 9852078 |
| STX17 | FLJ20651 | MGC102796 | MGC126613 | MGC126615 | syntaxin 17 | - | HPRD,BioGRID | 9852078 |
| STX1A | HPC-1 | STX1 | p35-1 | syntaxin 1A (brain) | - | HPRD,BioGRID | 9852078 |
| STX3 | STX3A | syntaxin 3 | - | HPRD,BioGRID | 9852078 |
| STX4 | STX4A | p35-2 | syntaxin 4 | Reconstituted Complex | BioGRID | 9852078 |
| STX6 | - | syntaxin 6 | - | HPRD | 9880331 |11423532 |
| STX7 | - | syntaxin 7 | - | HPRD,BioGRID | 9852078 |11423532 |
| VAMP7 | SYBL1 | TI-VAMP | VAMP-7 | vesicle-associated membrane protein 7 | - | HPRD,BioGRID | 12853575 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| KEGG SNARE INTERACTIONS IN VESICULAR TRANSPORT | 38 | 25 | All SZGR 2.0 genes in this pathway |
| GOZGIT ESR1 TARGETS DN | 781 | 465 | All SZGR 2.0 genes in this pathway |
| SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN UP | 479 | 299 | All SZGR 2.0 genes in this pathway |
| LOCKWOOD AMPLIFIED IN LUNG CANCER | 214 | 139 | All SZGR 2.0 genes in this pathway |
| DING LUNG CANCER EXPRESSION BY COPY NUMBER | 100 | 62 | All SZGR 2.0 genes in this pathway |
| MASSARWEH TAMOXIFEN RESISTANCE UP | 578 | 341 | All SZGR 2.0 genes in this pathway |
| ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP | 863 | 514 | All SZGR 2.0 genes in this pathway |
| BONOME OVARIAN CANCER SURVIVAL OPTIMAL DEBULKING | 246 | 152 | All SZGR 2.0 genes in this pathway |
| JOHNSTONE PARVB TARGETS 2 UP | 140 | 94 | All SZGR 2.0 genes in this pathway |
| BRUINS UVC RESPONSE LATE | 1137 | 655 | All SZGR 2.0 genes in this pathway |
| PEDRIOLI MIR31 TARGETS DN | 418 | 245 | All SZGR 2.0 genes in this pathway |
| LIM MAMMARY STEM CELL DN | 428 | 246 | All SZGR 2.0 genes in this pathway |