All data sets in SZGR

(updated 05/01/2016)

Gene set name (Click to find documents)	Method	No. of genes (Click to find gene list)	Reference
SZ-SNPs from GWAS Catalog	Curation from literation	561 SNPs in XX genes	GWAS Catalogy
PGC significant SNPs	GWAS	128 SNPs, involved in 750 genes (+35/-10kb)	Psychiatric Genomics Consortium (PGC)
SZ-SNPs collected from GWASdb	GWAS	2537 SNPs, in XX genes	GWASdb
De novo mutations	Manual collection of next-generation sequencing studies	302 genes	PubMed
Association	A combined odds ratio method (Sun et al. 2008), association studies	281	SchizophreniaGene Database
GSMA_I	genome scan meta-analysis	2155	Lewis et al. (2003) Genome Scan Meta-Analysis of Schizophrenia and Bipolar Disorder, Part II: Schizophrenia. The American Journal of Human Genetics 73(1): 34 - 48 PubMed
GSMA_IIA	genome scan meta-analysis (All samples)	2295	Ng et al. (2008) Meta-analysis of 32 genome-wide linkage studies of schizophrenia. Molecular Psychiatry: 1 - 12
GSMA_IIE	genome scan meta-analysis (European-ancestry samples)	1474	Ng et al. (2008) Meta-analysis of 32 genome-wide linkage studies of schizophrenia. Molecular Psychiatry: 1 - 12
Literature	High-throughput literature-search	1682	PubMed
Expression	Expression	726	The Stanley Medical Research Institute Online Genomics Database
GO_Annotation	Mapping neuro-related keywords to Gene Ontology annotations	1947	Gene Ontoloty
Network	Shortest path distance of core genes in the Human protein-protein interaction network	1035	Wu et al. (2008). Network-based global inference of human disease genes. Mol Syst Biol 4 PubMed
Core genes	Manual collection	38	Ross et al. (2006) Neurobiology of schizophrenia. Neuron. 52(1): 139-53 PubMed Allen et al. (2008) Systematic meta-analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database. Nat. Genet. 40: 827 - 834 PubMed
75 genes by COR	Gene ranking	75	Sun et al. (2008) Candidate genes for schizophrenia: a survey of association studies and gene ranking. Am. J. Med. Genet. B Neuropsychiatr. Genet. 147B: 1173-1181 PubMed
160 by Lewis et al.	Gene ranking using optimal weight matrix	160	Sun et al. (2009) Bioinformatics: accepted with minor revision
173 by Ng et al.	Gene ranking	173	Sun et al. (2009) Bioinformatics: accepted with minor revision