TissGeneSummary for UGT3A1 |
Gene summary |
Basic gene information | Gene symbol | UGT3A1 |
Gene name | UDP glycosyltransferase 3 family, polypeptide A1 | |
Synonyms | - | |
Cytomap | UCSC genome browser: 5p13.2 | |
Type of gene | protein-coding | |
RefGenes | NM_001171873.1, NM_152404.3, | |
Description | UDP-glucuronosyltransferase 3A1UDPGT 3A1 | |
Modification date | 20141211 | |
dbXrefs | HGNC : HGNC | |
HPRD : 08175 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_UGT3A1 | |
BioGPS: 133688 | ||
Pathway | NCI Pathway Interaction Database: UGT3A1 | |
KEGG: UGT3A1 | ||
REACTOME: UGT3A1 | ||
Pathway Commons: UGT3A1 | ||
Context | iHOP: UGT3A1 | |
ligand binding site mutation search in PubMed: UGT3A1 | ||
UCL Cancer Institute: UGT3A1 | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | KidneyTestis | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | KIRC,KIRP,KICHTGCT | |
Reference showing the relevant tissue of UGT3A1 | ||
Description by TissGene annotations |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
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TissGeneExp for UGT3A1 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
PRAD | -0.458833711 | 1.309773982 | -1.768607692 | 6.41E-08 | 6.36E-07 |
KICH | -0.428624326 | 9.021567674 | -9.450192 | 1.41E-31 | 1.55E-28 |
KIRC | 6.798770563 | 9.427524729 | -2.628754167 | 3.72E-09 | 1.17E-08 |
LIHC | 8.076243674 | 9.644889674 | -1.568646 | 0.00627 | 0.014023837 |
HNSC | -1.17154507 | 0.247347953 | -1.418893023 | 3.11E-05 | 0.000157601 |
KIRP | 6.390925424 | 9.669009799 | -3.278084375 | 2.85E-05 | 0.000109789 |
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TissGene-miRNA for UGT3A1 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for UGT3A1 |
TissGeneSNV for UGT3A1 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.E71K | SKCM | 4 |
p.E311K | SKCM | 2 |
p.G16R | SKCM | 2 |
p.R380H | STAD | 2 |
p.S81L | SKCM | 2 |
p.P188S | SKCM | 2 |
p.H85Y | SKCM | 2 |
p.G326R | SKCM | 2 |
p.G396E | SKCM | 2 |
p.K519N | SKCM | 1 |
p.V163M | LUAD | 1 |
p.G171S | LGG | 1 |
p.N413I | LUAD | 1 |
p.M217V | STAD | 1 |
p.Q453H | LGG | 1 |
p.G382S | BLCA | 1 |
p.V510M | LUSC | 1 |
p.Y433H | LGG | 1 |
p.S133F | READ | 1 |
p.D252N | SKCM | 1 |
p.S355I | LUAD | 1 |
p.R432K | SKCM | 1 |
p.V17A | STAD | 1 |
p.K522T | COAD | 1 |
p.R41L | LUAD | 1 |
p.T469A | SKCM | 1 |
p.K128N | PAAD | 1 |
p.R234K | SKCM | 1 |
p.G176E | SKCM | 1 |
p.G16E | SKCM | 1 |
p.E106* | UCEC | 1 |
p.K431E | LUSC | 1 |
p.V2A | SKCM | 1 |
p.S211F | SKCM | 1 |
p.A321S | COAD | 1 |
p.D418N | READ | 1 |
p.D284E | LUAD | 1 |
p.L497M | ESCA | 1 |
p.G467E | SKCM | 1 |
p.Y267C | OV | 1 |
p.N223K | LUAD | 1 |
p.P451S | SKCM | 1 |
p.H307R | BLCA | 1 |
p.E38* | UCEC | 1 |
p.G269R | HNSC | 1 |
p.S441I | LGG | 1 |
p.G508C | LUAD | 1 |
p.V142A | LUAD | 1 |
p.G118V | SKCM | 1 |
p.S59N | CESC | 1 |
p.R411W | SKCM | 1 |
p.T469M | UCEC | 1 |
p.K24N | UCEC | 1 |
p.M398K | LUSC | 1 |
p.T523I | ESCA | 1 |
p.P185S | LUSC | 1 |
p.V438L | LUAD | 1 |
p.K522N | READ | 1 |
p.M272I | ESCA | 1 |
p.S333N | COAD | 1 |
p.D102N | SKCM | 1 |
p.D252E | PAAD | 1 |
p.E156K | LUSC | 1 |
p.D148N | SKCM | 1 |
p.W329X | SKCM | 1 |
p.G326E | SKCM | 1 |
p.R380H | GBM | 1 |
p.P260S | UCEC | 1 |
p.A100E | PRAD | 1 |
p.A146T | BLCA | 1 |
p.L166F | SKCM | 1 |
p.A244S | SKCM | 1 |
p.V296D | KICH | 1 |
p.R41W | GBM | 1 |
p.W501* | SKCM | 1 |
p.P353L | PAAD | 1 |
p.D140N | SKCM | 1 |
p.E71* | LUAD | 1 |
p.G291E | SKCM | 1 |
p.F204I | STAD | 1 |
p.E273K | SKCM | 1 |
p.P353L | SKCM | 1 |
p.M114I | LUAD | 1 |
p.F491S | STAD | 1 |
p.A50D | UCEC | 1 |
p.P278S | SKCM | 1 |
p.R364H | BRCA | 1 |
p.N289S | HNSC | 1 |
p.D129N | SKCM | 1 |
p.L8R | STAD | 1 |
p.L352R | LUAD | 1 |
p.A258D | LUAD | 1 |
p.D460N | SKCM | 1 |
p.D222G | CHOL | 1 |
p.S81L | HNSC | 1 |
p.P82R | LUAD | 1 |
p.I67M | SKCM | 1 |
p.W247* | LUAD | 1 |
p.G387E | SKCM | 1 |
p.Q120H | LUAD | 1 |
p.W329* | SKCM | 1 |
p.S20L | SKCM | 1 |
p.A475T | READ | 1 |
p.L110F | LUSC | 1 |
p.L46V | LUSC | 1 |
p.G457S | SKCM | 1 |
p.F366S | BLCA | 1 |
p.A288G | HNSC | 1 |
p.D418N | BRCA | 1 |
p.A164T | COAD | 1 |
p.G60R | SKCM | 1 |
p.N223S | HNSC | 1 |
p.Y74X | ACC | 1 |
p.A299V | SKCM | 1 |
p.G326* | SKCM | 1 |
p.E48D | PAAD | 1 |
p.A100T | SKCM | 1 |
p.L14I | HNSC | 1 |
p.M424I | UCEC | 1 |
p.R88K | SKCM | 1 |
p.V442D | LUAD | 1 |
p.A164T | PAAD | 1 |
p.M500V | LUAD | 1 |
p.R234M | PAAD | 1 |
p.T419I | COAD | 1 |
p.P278L | SKCM | 1 |
p.L13F | SKCM | 1 |
p.D40Y | HNSC | 1 |
p.G494R | BRCA | 1 |
p.S302F | SKCM | 1 |
p.W215R | COAD | 1 |
p.G504E | SKCM | 1 |
p.K135N | STAD | 1 |
p.G382C | SKCM | 1 |
p.R400Q | HNSC | 1 |
p.Y74* | ACC | 1 |
p.Q453H | UCEC | 1 |
p.Q308E | LUSC | 1 |
p.D460N | BLCA | 1 |
p.E227D | UCEC | 1 |
p.S43C | BLCA | 1 |
p.C121G | COAD | 1 |
p.R212K | BLCA | 1 |
p.D40V | SARC | 1 |
p.H322R | SKCM | 1 |
p.S151C | LUAD | 1 |
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TissGeneCNV for UGT3A1 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for UGT3A1 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AR-A24X-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A1EU-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AC-A23C-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AC-A23E-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A7-A0CG-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-D8-A27T-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-B6-A40B-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-E9-A1RA-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AN-A046-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-E2-A15M-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-EW-A1J3-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-E9-A1RB-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A8-A095-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A18U-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-E9-A1N4-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A1FL-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A0H3-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A2-A0EW-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A8-A09M-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AC-A3OD-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A2-A25A-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-E2-A15G-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AR-A24M-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A2-A0SY-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A2-A0D3-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A1ET-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A2-A25C-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A0B5-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-E9-A1RC-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A0HO-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-D8-A1JU-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AR-A1AL-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A7-A13G-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A0DT-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A7-A26E-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-OL-A5D8-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AO-A1KS-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-A8-A09I-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-AC-A2FM-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
Chimerdb3.0 | FusionScan | BRCA | TCGA-BH-A0W3-01A | UGT3A1-NAT1 | 5'UTR-5'UTR | chr5:35997340 | chr8:18076919 |
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TissGeneNet for UGT3A1 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for UGT3A1 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for UGT3A1 |
TissGeneDrug for UGT3A1 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for UGT3A1 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |
umls:C0040336 | Tobacco Use Disorder | 1 | GAD |