TissGeneSummary for GOT1L1 |
Gene summary |
Basic gene information | Gene symbol | GOT1L1 |
Gene name | glutamic-oxaloacetic transaminase 1-like 1 | |
Synonyms | - | |
Cytomap | UCSC genome browser: 8p11.23 | |
Type of gene | protein-coding | |
RefGenes | NM_152413.2, | |
Description | glutamate oxaloacetate transaminase 1-like protein 1putative aspartate aminotransferase, cytoplasmic 2transaminase A-like protein 1 | |
Modification date | 20141207 | |
dbXrefs | HGNC : HGNC | |
Ensembl : ENSG00000169154 | ||
HPRD : 14558 | ||
Vega : OTTHUMG00000164027 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_GOT1L1 | |
BioGPS: 137362 | ||
Pathway | NCI Pathway Interaction Database: GOT1L1 | |
KEGG: GOT1L1 | ||
REACTOME: GOT1L1 | ||
Pathway Commons: GOT1L1 | ||
Context | iHOP: GOT1L1 | |
ligand binding site mutation search in PubMed: GOT1L1 | ||
UCL Cancer Institute: GOT1L1 | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | HPA,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Testis | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | TGCT | |
Reference showing the relevant tissue of GOT1L1 | ||
Description by TissGene annotations |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
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TissGeneExp for GOT1L1 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
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TissGene-miRNA for GOT1L1 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for GOT1L1 |
TissGeneSNV for GOT1L1 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.E362K | SKCM | 2 |
p.G140R | SKCM | 1 |
p.P289H | PRAD | 1 |
p.V106A | THYM | 1 |
p.V180I | PRAD | 1 |
p.G349E | SKCM | 1 |
p.Y390C | LIHC | 1 |
p.R295H | LUAD | 1 |
p.S381R | SARC | 1 |
p.G107S | LUSC | 1 |
p.V235M | UCEC | 1 |
p.I167T | PAAD | 1 |
p.N291S | HNSC | 1 |
p.K190N | PRAD | 1 |
p.Q283H | LGG | 1 |
p.L161V | LUAD | 1 |
p.V235A | LUSC | 1 |
p.D164N | PRAD | 1 |
p.T298N | BLCA | 1 |
p.G352D | UCEC | 1 |
p.Q277E | LUAD | 1 |
p.A265E | LUSC | 1 |
p.L169I | LUAD | 1 |
p.I419T | UCEC | 1 |
p.L87H | LUAD | 1 |
p.G218S | SKCM | 1 |
p.F143L | LUAD | 1 |
p.P215S | SKCM | 1 |
p.H104Y | SKCM | 1 |
p.L281V | UCEC | 1 |
p.E412K | SKCM | 1 |
p.D166G | CESC | 1 |
p.M202V | UCEC | 1 |
p.K159R | ACC | 1 |
p.G184E | SKCM | 1 |
p.S246Y | UCEC | 1 |
p.N357T | SARC | 1 |
p.E393V | BLCA | 1 |
p.Y24H | KIRP | 1 |
p.N31K | BLCA | 1 |
p.L305P | OV | 1 |
p.I372F | STAD | 1 |
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TissGeneCNV for GOT1L1 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for GOT1L1 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
TCGAfusionPortal | PRADA | LUAD | TCGA-69-8255-01A | KAT6A-GOT1L1 | In-frame | Chr8:41905896 | Chr8:37794575 |
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TissGeneNet for GOT1L1 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for GOT1L1 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for GOT1L1 |
TissGeneDrug for GOT1L1 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for GOT1L1 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |