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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for GRM5
check button Gene summary
Basic gene informationGene symbolGRM5
Gene nameglutamate receptor, metabotropic 5
SynonymsGPRC1E|MGLUR5|PPP1R86|mGlu5
CytomapUCSC genome browser: 11q14.3
Type of geneprotein-coding
RefGenesNM_000842.4,
NM_001143831.2,
Descriptionmetabotropic glutamate receptor 5protein phosphatase 1, regulatory subunit 86
Modification date20141207
dbXrefs MIM : 604102
HGNC : HGNC
Ensembl : ENSG00000168959
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_GRM5
BioGPS: 2915
PathwayNCI Pathway Interaction Database: GRM5
KEGG: GRM5
REACTOME: GRM5
Pathway Commons: GRM5
ContextiHOP: GRM5
ligand binding site mutation search in PubMed: GRM5
UCL Cancer Institute: GRM5
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,TiGER
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Brain
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)GBM,LGG
Reference showing the relevant tissue of GRM5
Description by TissGene annotationsCancer gene
Have significant anti-correlated miRNA
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for GRM5

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
THCA-1.38207452-2.8858101131.5037355931.04E-117.94E-11
KICH-1.3078451641.027770836-2.3356163.67E-092.08E-08
KIRP2.0963693360.6815662111.4148031250.01230.026338682
LUAD0.562384422-0.6145293711.1769137930.003370.00665397


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TissGene-miRNA for GRM5

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
ACChsa-miR-30b-5pMIMAT00004200.018-0.2778
ACChsa-miR-30a-5pMIMAT00000870.021-0.2778
ACChsa-miR-30b-5pMIMAT00004200.018-0.2778
ACChsa-miR-30a-5pMIMAT00000870.021-0.2778
ACChsa-miR-128-3pMIMAT00004240.011-0.2978
ACChsa-miR-128-3pMIMAT00004240.011-0.2978
ACChsa-miR-129-5pMIMAT00002420.0058-0.3178
ACChsa-miR-129-5pMIMAT00002420.0058-0.3178


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TissGeneMut for GRM5
TissGeneSNV for GRM5

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.R834CSTAD2
p.R574*UCEC2
p.T906PSTAD2
p.Y340CHNSC2
p.C803WPAAD1
p.S116FSARC1
p.G92CLUSC1
p.M907VBLCA1
p.E111VLUAD1
p.S509PMESO1
p.R435WLUAD1
p.A623SKIRC1
p.T1199IBLCA1
p.L744IESCA1
p.D1171NSKCM1
p.I824NLUAD1
p.R844LLUAD1
p.A1140TPCPG1
p.T183AHNSC1
p.A710SBLCA1
p.A692VBLCA1
p.S1187PHNSC1
p.G897ESKCM1
p.A905PSTAD1
p.R605HSTAD1
p.D1139NSKCM1
p.S384YUCEC1
p.R605SLUAD1
p.K851TSTAD1
p.R200MUCEC1
p.V192LPRAD1
p.T75NKIRC1
p.P1119SKIRP1
p.E14KSKCM1
p.F112LLUSC1
p.A855TLUAD1
p.P193LLUSC1
p.Y405CLUAD1
p.D258NLUAD1
p.G369ESKCM1
p.A155VBRCA1
p.G464*LUSC1
p.A271TBRCA1
p.V1065IUCEC1
p.G526ESKCM1
p.S909IHNSC1
p.W575*SKCM1
p.H267NBLCA1
p.F804LUCEC1
p.G460RSKCM1
p.L862ILUSC1
p.L268MLUAD1
p.A836TSTAD1
p.K207NLIHC1
p.Y478CUCEC1
p.G92DBLCA1
p.S840YCOAD1
p.D457YCOAD1
p.R727XSTAD1
p.R292CSTAD1
p.A174TLUAD1
p.C1190SLUAD1
p.A775TPRAD1
p.R128LKIRC1
p.A827DSTAD1
p.F185LBLCA1
p.A963TPAAD1
p.S556FSKCM1
p.S1086CLIHC1
p.F633VSARC1
p.H391NLUAD1
p.T780MLUAD1
p.V585AUCEC1
p.S176RUCEC1
p.F698LUCEC1
p.M429IREAD1
p.G421VLUSC1
p.D457NSTAD1
p.D204GTHYM1
p.S102LSTAD1
p.A289VSKCM1
p.R727*STAD1
p.R319LLUAD1
p.S98YLUAD1
p.I800TCOAD1
p.L653VHNSC1
p.S1211LSTAD1
p.L302PLUAD1
p.G526ABLCA1
p.E77KSKCM1
p.T924MCOAD1
p.R834CLUSC1
p.R68IUCEC1
p.L1075HHNSC1
p.V334FLUAD1
p.T535ISTAD1
p.E111AKIRC1
p.V52ISTAD1
p.R292CUCEC1
p.M189ILUSC1
p.E541DLUAD1
p.R932CLGG1
p.E527KSKCM1
p.T1110MSTAD1
p.P32LLGG1
p.A670VTHYM1
p.V1089IESCA1
p.S239YUCEC1
p.R605CCOAD1
p.R272QBLCA1
p.L411ILIHC1
p.P558RCHOL1
p.Q197KHNSC1
p.D1174ASKCM1
p.E439GESCA1
p.R727XREAD1
p.E770KSKCM1
p.R668HCESC1
p.Q318HHNSC1
p.R524QBLCA1
p.N166SUCEC1
p.R362HCOAD1
p.D82GLUAD1
p.R345WUCS1
p.D394NSKCM1
p.S151PSTAD1
p.M202VUCEC1
p.S109NUCEC1
p.T453MDLBC1
p.G410WLUAD1
p.S153YPAAD1
p.V484ILIHC1
p.R435WBLCA1
p.P346TLUAD1
p.W307CACC1
p.P765SSKCM1
p.R345QLUAD1
p.M1IUCEC1
p.L344FPAAD1
p.G628CLUAD1
p.Q157*BLCA1
p.L573IUCEC1
p.R114ILUAD1
p.F112LSKCM1
p.I289TLUAD1
p.S151FSKCM1
p.I726FESCA1
p.R671GCOAD1
p.S406LSTAD1
p.E516DLUAD1
p.R294SBLCA1
p.V43AUCEC1
p.S8*STAD1
p.H390QREAD1
p.W336CLGG1
p.I774NSTAD1
p.V948ISTAD1
p.V191AUCEC1
p.Q169HUCEC1
p.M290VLUAD1
p.S136YBLCA1
p.D97NHNSC1
p.Q919HBLCA1
p.S613*LUAD1
p.V1161ELIHC1
p.D131NLUAD1
p.S8XSTAD1
p.F596SPAAD1
p.C754*LUAD1
p.A1095TCOAD1
p.E124KCESC1
p.E579KBLCA1
p.H267DLUSC1
p.R17CLUSC1
p.R128CGBM1
p.M237LLIHC1
p.G652CBLCA1
p.R844CPRAD1
p.G675VSTAD1
p.S1172LCESC1
p.L268FSTAD1
p.D204GCOAD1
p.R351*UCEC1
p.K525NCOAD1
p.G58RSKCM1
p.L455PLUAD1
p.Q255KSTAD1
p.L744VLUAD1
p.M237KLUAD1
p.A623DSARC1
p.H45QLUSC1
p.T780MUCEC1
p.L418PSTAD1
p.S805LSKCM1
p.A408GLUAD1
p.D480AKIRC1
p.S8PUCEC1
p.P288THNSC1
p.G92ROV1
p.A1098VREAD1
p.P580TLUAD1
p.D1174NSKCM1
p.R292LESCA1
p.K259EHNSC1
p.F893LCOAD1
p.P353TLUAD1
p.K140*LUAD1
p.S840FSKCM1
p.F358CUCEC1
p.F277VESCA1
p.Q647*SKCM1
p.G490ESKCM1
p.P346TCESC1
p.P1087LCOAD1
p.P346SSTAD1
p.E1074QGBM1
p.S173*BLCA1
p.T348PSTAD1
p.R524*LGG1
p.T326RBLCA1
p.T219ISTAD1
p.A39SLUAD1
p.W785RKIRP1
p.D488ELUAD1
p.R138HSTAD1
p.R366QCOAD1
p.S304RHNSC1
p.R61HCOAD1
p.S805XSTAD1
p.L627QLUAD1
p.V334ISTAD1
p.M714ISKCM1
p.C1062FCOAD1
p.Y172HSTAD1
p.N796KLUAD1
p.E298AUCEC1
p.S136FSKCM1
p.N88SUCEC1
p.V217MSTAD1
p.T282MPRAD1
p.P580LSKCM1
p.A199SSTAD1
p.S215LSKCM1
p.R858TCESC1
p.W557CHNSC1


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TissGeneCNV for GRM5

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for GRM5

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNADB175186GRM5-SF3A3chr11:88766533chr1:38449859
TCGAfusionPortalPRADALUADTCGA-91-6831-01ATTC33-GRM55UTR-CDSChr5:40755926Chr11:88242672


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TissGeneNet for GRM5

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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COAD (tumor)COAD (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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HNSC (tumor)HNSC (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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KICH (tumor)KICH (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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KIRC (tumor)KIRC (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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KIRP (tumor)KIRP (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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LIHC (tumor)LIHC (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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LUAD (tumor)LUAD (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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LUSC (tumor)LUSC (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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PRAD (tumor)PRAD (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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STAD (tumor)STAD (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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THCA (tumor)THCA (normal)
GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (tumor)GRM5, PRKCG, PRKCA, FLNA, EFNB2, CALM1, PRKCE, GPRASP1, PRKCZ, PRKCD, HOMER3, PRKCB, PRKCQ, RGS12, HOMER1, GRASP (normal)
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TissGeneProg for GRM5

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for GRM5
TissGeneDrug for GRM5

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status
DB06201RufinamideInhibitorSmall moleculeApproved
DB00659AcamprosateAntagonistSmall moleculeApproved|Investigational


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TissGeneDisease for GRM5

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0036341Schizophrenia12BeFree,GAD
umls:C0016667Fragile X Syndrome7BeFree
umls:C0004936Mental disorders4BeFree,GAD
umls:C0036572Seizures4BeFree
umls:C1263846Attention deficit hyperactivity disorder4BeFree,CTD_human,GAD,GWASCAT
umls:C0033975Psychotic Disorders3BeFree
umls:C0002736Amyotrophic Lateral Sclerosis2BeFree
umls:C0011570Mental Depression2BeFree
umls:C0011581Depressive disorder2BeFree
umls:C0014072Experimental Autoimmune Encephalomyelitis2BeFree
umls:C0018817Atrial Septal Defects2BeFree
umls:C0038220Status Epilepticus2CTD_human
umls:C0041696Unipolar Depression2BeFree
umls:C0349204Nonorganic psychosis2BeFree
umls:C0752347Lewy Body Disease2BeFree
umls:C1269683Major Depressive Disorder2BeFree
umls:C0001973Alcoholic Intoxication, Chronic1GAD
umls:C0002395Alzheimer's Disease1BeFree
umls:C0003469Anxiety Disorders1BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0004352Autistic Disorder1BeFree
umls:C0005586Bipolar Disorder1BeFree
umls:C0011882Diabetic Neuropathies1CTD_human
umls:C0013146Drug abuse1BeFree
umls:C0013421Dystonia1BeFree
umls:C0014556Epilepsy, Temporal Lobe1CTD_human
umls:C0019829Hodgkin Disease1BeFree
umls:C0020179Huntington Disease1BeFree
umls:C0026269Mitral Valve Stenosis1BeFree
umls:C0026769Multiple Sclerosis1BeFree
umls:C0027627Neoplasm Metastasis1BeFree
umls:C0027796Neuralgia1CTD_human
umls:C0027819Neuroblastoma1BeFree
umls:C0029463Osteosarcoma1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0043094Weight Gain1GAD
umls:C0153381Malignant neoplasm of mouth1BeFree
umls:C0220641Lip and Oral Cavity Carcinoma1BeFree
umls:C0236736Cocaine-Related Disorders1CTD_human
umls:C0236969Substance-Related Disorders1CTD_human
umls:C0338430Limbic Encephalitis1BeFree
umls:C0393593Dystonia Disorders1BeFree
umls:C0585442Osteosarcoma of bone1BeFree
umls:C0700095Central neuroblastoma1BeFree
umls:C1510586Autism Spectrum Disorders1BeFree
umls:C1851945DYSTONIA 1, TORSION, AUTOSOMAL DOMINANT1BeFree
umls:C2911647Weight Gain Adverse Event1GAD