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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for HSPA2
check button Gene summary
Basic gene informationGene symbolHSPA2
Gene nameheat shock 70kDa protein 2
SynonymsHSP70-2|HSP70-3
CytomapUCSC genome browser: 14q24.1
Type of geneprotein-coding
RefGenesNM_021979.3,
Descriptionheat shock 70kD protein 2heat shock-related 70 kDa protein 2
Modification date20141207
dbXrefs MIM : 140560
HGNC : HGNC
Ensembl : ENSG00000126803
HPRD : 07174
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_HSPA2
BioGPS: 3306
PathwayNCI Pathway Interaction Database: HSPA2
KEGG: HSPA2
REACTOME: HSPA2
Pathway Commons: HSPA2
ContextiHOP: HSPA2
ligand binding site mutation search in PubMed: HSPA2
UCL Cancer Institute: HSPA2
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Testis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)TGCT
Reference showing the relevant tissue of HSPA2
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0042026protein refolding21231916
GO:0090084negative regulation of inclusion body assembly21231916
GO:0042026protein refolding21231916
GO:0090084negative regulation of inclusion body assembly21231916


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TissGeneExp for HSPA2

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRC0.4977634764.252805142-3.7550416672.70E-379.31E-36
KIRP0.3736679894.021024239-3.647356252.10E-167.85E-15
COAD1.1217908262.849083134-1.7272923081.14E-055.15E-05
KICH1.2880423644.858262364-3.570229.84E-131.18E-11
BLCA0.393644472.654007628-2.2603631582.10E-050.0003336
STAD0.4112742392.276396114-1.8651218752.94E-050.000276655


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TissGene-miRNA for HSPA2

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for HSPA2
TissGeneSNV for HSPA2

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.E389DUCEC2
p.S17XSKCM1
p.Q354LLUSC1
p.D532YLUAD1
p.S278RLUAD1
p.G20WBRCA1
p.S279LSTAD1
p.T166MCHOL1
p.E591KCESC1
p.S388PKIRC1
p.A179VBLCA1
p.A183SLUSC1
p.D639GACC1
p.A269TREAD1
p.A31TCOAD1
p.A540TCOAD1
p.A56TCOAD1
p.A245TLUAD1
p.C18YBRCA1
p.E306QHNSC1
p.R538QESCA1
p.T166MDLBC1
p.V638MSTAD1
p.D202EKIRP1
p.S224FSTAD1
p.I145MSARC1
p.A327SLUAD1
p.G341VLUAD1
p.D393YLUAD1
p.D398NSTAD1
p.Q476*SARC1
p.E361QBLCA1
p.G185SBLCA1
p.R304CSTAD1
p.S622GSTAD1
p.D228VLUAD1
p.A55TLGG1
p.S622GCOAD1
p.S622GUCEC1
p.T38SLUAD1
p.P468SCESC1
p.P424TLUSC1
p.R472CSKCM1
p.V522LUCEC1
p.A262TCOAD1
p.V210MSTAD1
p.P618TKIRP1
p.D311NCOAD1
p.S289LSKCM1
p.G620DSTAD1
p.E596KBLCA1
p.A55TCOAD1
p.E389KLUAD1
p.D482NBLCA1
p.A376TUCEC1
p.D398NBRCA1
p.N457YSARC1
p.R172HCOAD1
p.K600ESKCM1
p.V399MSTAD1
p.T555MPRAD1
p.K598MCOAD1
p.N486TSKCM1
p.R172SCESC1
p.A71TPAAD1
p.A525VACC1
p.T166MUCEC1
p.D575GLUAD1


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TissGeneCNV for HSPA2

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for HSPA2

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAI371755EIF4A1-HSPA2chr17:7482031chr14:65009163


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TissGeneNet for HSPA2

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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COAD (tumor)COAD (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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HNSC (tumor)HNSC (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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KICH (tumor)KICH (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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KIRC (tumor)KIRC (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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KIRP (tumor)KIRP (normal)
HSPA2, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2 (normal)
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LIHC (tumor)LIHC (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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LUAD (tumor)LUAD (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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LUSC (tumor)LUSC (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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PRAD (tumor)PRAD (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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STAD (tumor)STAD (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, PARP1, SCHIP1, TAB2, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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THCA (tumor)THCA (normal)
HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, TAB2, MEOX2, RFWD2, HSPBP1 (tumor)HSPA2, SIRT7, UBC, CFTR, SRC, CDK9, HNRNPA1, CDK1, MAP3K3, MEPCE, RIPK2, NCOA2, EWSR1, PSMA3, BAP1, PARP1, SCHIP1, PARP2, MEOX2, RFWD2, HSPBP1 (normal)
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TissGeneProg for HSPA2

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for HSPA2
TissGeneDrug for HSPA2

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for HSPA2

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0010346Crohn Disease5BeFree,GAD
umls:C0001339Acute pancreatitis3BeFree
umls:C0006142Malignant neoplasm of breast3BeFree
umls:C0024141Lupus Erythematosus, Systemic3BeFree
umls:C0678222Breast Carcinoma3BeFree
umls:C1956346Coronary Artery Disease3BeFree
umls:C0001824Agranulocytosis2BeFree
umls:C0004509Azoospermia2BeFree
umls:C0007134Renal Cell Carcinoma2BeFree
umls:C0007282Carotid Stenosis2BeFree
umls:C0010054Coronary Arteriosclerosis2BeFree
umls:C0010068Coronary heart disease2BeFree
umls:C0011854Diabetes Mellitus, Insulin-Dependent2BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent2BeFree
umls:C0013295Duodenal Ulcer2BeFree
umls:C0018781Noise-induced hearing loss2GAD
umls:C0021364Male infertility2BeFree,LHGDN
umls:C0024623Malignant neoplasm of stomach2BeFree
umls:C0027627Neoplasm Metastasis2BeFree
umls:C0028754Obesity2BeFree
umls:C0149521Pancreatitis, Chronic2BeFree,GAD
umls:C0243026Sepsis2GAD
umls:C0699791Stomach Carcinoma2BeFree
umls:C1516170Cancer Cell Growth2BeFree
umls:C2931822Nasopharyngeal carcinoma2BeFree
umls:C0002395Alzheimer's Disease1GAD
umls:C0003850Arteriosclerosis1BeFree
umls:C0004153Atherosclerosis1BeFree
umls:C0007131Non-Small Cell Lung Carcinoma1BeFree
umls:C0007787Transient Ischemic Attack1BeFree
umls:C0009324Ulcerative Colitis1BeFree
umls:C0009375Colonic Neoplasms1CTD_human
umls:C0011570Mental Depression1BeFree
umls:C0011581Depressive disorder1BeFree
umls:C0011847Diabetes1BeFree
umls:C0011849Diabetes Mellitus1BeFree
umls:C0017154Gastritis, Atrophic1GAD
umls:C0018213Graves Disease1BeFree
umls:C0018802Congestive heart failure1BeFree
umls:C0021390Inflammatory Bowel Diseases1BeFree
umls:C0021831Intestinal Diseases1GAD
umls:C0023290Leishmaniasis, Visceral1BeFree
umls:C0024299Lymphoma1BeFree
umls:C0025568Metaplasia1GAD
umls:C0029453Osteopenia1GAD
umls:C0030305Pancreatitis1BeFree
umls:C0032927Precancerous Conditions1BeFree,GAD
umls:C0036983Septic Shock1GAD
umls:C0038013Ankylosing spondylitis1BeFree
umls:C0038454Cerebrovascular accident1BeFree
umls:C0042341Varicocele1LHGDN
umls:C0079487Helicobacter Infections1GAD
umls:C0151744Myocardial Ischemia1CTD_human
umls:C0235950Zinc deficiency1BeFree
umls:C0242379Malignant neoplasm of lung1BeFree
umls:C0341318Enterocutaneous Fistula1BeFree
umls:C0376358Malignant neoplasm of prostate1BeFree
umls:C0376670Pancreatitis, Alcoholic1GAD
umls:C0409974Lupus Erythematosus1GAD
umls:C0596263Carcinogenesis1BeFree
umls:C0600139Prostate carcinoma1BeFree
umls:C0684249Carcinoma of lung1BeFree
umls:C0694549Community acquired pneumonia1BeFree
umls:C0917798Cerebral Ischemia1BeFree
umls:C0949691Spondylarthropathies1BeFree
umls:C1719672Severe Sepsis1BeFree
umls:C2239176Liver carcinoma1BeFree