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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for NOX4
check button Gene summary
Basic gene informationGene symbolNOX4
Gene nameNADPH oxidase 4
SynonymsKOX|KOX-1|RENOX
CytomapUCSC genome browser: 11q14.2-q21
Type of geneprotein-coding
RefGenesNM_001143836.2,
NM_001143837.1,NM_001291926.1,NM_001291927.1,NM_001291929.1,
NM_001300995.1,NM_016931.4,NR_026571.1,NR_120406.1,
Descriptionkidney oxidase-1kidney superoxide-producing NADPH oxidaserenal NAD(P)H-oxidase
Modification date20141207
dbXrefs MIM : 605261
HGNC : HGNC
Ensembl : ENSG00000086991
HPRD : 09243
Vega : OTTHUMG00000167298
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_NOX4
BioGPS: 50507
PathwayNCI Pathway Interaction Database: NOX4
KEGG: NOX4
REACTOME: NOX4
Pathway Commons: NOX4
ContextiHOP: NOX4
ligand binding site mutation search in PubMed: NOX4
UCL Cancer Institute: NOX4
Assigned class in TissGDB*A
Included tissue-specific gene expression resourcesHPA,TiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Kidney
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)KIRC,KIRP,KICH
Reference showing the relevant tissue of NOX4Role of Nox4 in murine models of kidney disease. Babelova A, Avaniadi D, Jung O, Fork C, Beckmann J, Kosowski J, Weissmann N, Anilkumar N, Shah AM, Schaefer L, Schröder K, Brandes RP. Free Radic Biol Med. 2012 Aug 15;53(4):842-53. doi: 10.1016/j.freeradbiomed.2012.06.027. Epub 2012 Jun 27. (pmid:22749956)
go to article
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0050667homocysteine metabolic process20031578
GO:0055114oxidation-reduction process10869423
GO:0072593reactive oxygen species metabolic process10869423
GO:0050667homocysteine metabolic process20031578
GO:0055114oxidation-reduction process10869423
GO:0072593reactive oxygen species metabolic process10869423


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TissGeneExp for NOX4

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LUAD0.857107109-0.5717463391.4288534481.96E-077.34E-07
LIHC-0.66874165-3.570913652.9021723.08E-245.26E-22
LUSC1.024517488-0.2676080031.292125491.35E-063.33E-06
COAD-0.135383342-3.3331679573.1977846152.41E-103.11E-09
STAD-0.1182944-2.1185600252.0002656251.70E-062.57E-05
THCA1.418203164-1.2669832772.6851864413.38E-221.97E-20
HNSC0.849858071-1.2570093712.1068674429.14E-101.52E-08
BRCA2.1388725961.0738655781.0650070184.74E-071.33E-06
PRAD-1.107041034-2.8911294961.7840884629.09E-091.13E-07
KIRP3.354499354.61193685-1.25743750.01780.036511985
ESCA-0.659152922-2.8750801952.2159272730.003410.031045224


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TissGene-miRNA for NOX4

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for NOX4
TissGeneSNV for NOX4

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.K554NUCEC1
p.S244*BRCA1
p.G310*CESC1
p.P136SSKCM1
p.I373TBLCA1
p.L50FOV1
p.L454FGBM1
p.P320ALIHC1
p.G524*LUAD1
p.N526IESCA1
p.Q24HACC1
p.Q313*BLCA1
p.W284CLUSC1
p.Y191FESCA1
p.E217KSKCM1
p.S389CHNSC1
p.K100NREAD1
p.R358*LUAD1
p.E370KESCA1
p.L356IESCA1
p.R102GDLBC1
p.G230ESKCM1
p.L40PESCA1
p.R382*PAAD1
p.R72KLGG1
p.A490PLIHC1
p.L40ILUAD1
p.K153ILIHC1
p.E116QBLCA1
p.S369YLUAD1
p.R147QCOAD1
p.S281TLUAD1
p.V350ALGG1
p.E305KSKCM1
p.I349TBLCA1
p.F469VGBM1
p.Y215FESCA1
p.Y242FLUSC1
p.F255IKIRC1
p.A143TSTAD1
p.S420LCOAD1
p.R382*LUAD1
p.V159FSTAD1
p.N206ILUAD1
p.E136KLUSC1
p.E299KSKCM1
p.I417RKIRC1
p.S7TSTAD1
p.G254ESKCM1
p.I441RKIRC1
p.A514PLIHC1
p.T205MGBM1
p.G351EUCS1
p.R71WLIHC1
p.R95WLIHC1
p.E370KSKCM1
p.Q258ELUAD1
p.P66LSKCM1
p.L149PESCA1
p.S347FSKCM1
p.R301*LUAD1
p.Q476ELUAD1
p.F130LDLBC1
p.S288FSKCM1
p.V170LLUSC1
p.F231IKIRC1
p.G351ECHOL1
p.A439SSTAD1
p.R569IUCEC1
p.Q39RESCA1
p.G161SBRCA1
p.K244NBLCA1
p.G539ESKCM1
p.R464IBLCA1
p.N38DHNSC1
p.S576YDLBC1
p.H23QBLCA1
p.I484SLIHC1
p.Q15RESCA1
p.P320LPAAD1
p.I324MUCEC1
p.R356QSKCM1
p.S517LSKCM1
p.F417SUCEC1
p.K406RESCA1
p.S365CHNSC1
p.G567VLUSC1
p.E149VBLCA1
p.P344LPAAD1
p.I508SLIHC1
p.S316RSTAD1
p.R455KUCEC1
p.K268NUCEC1
p.E241KSKCM1
p.D386NESCA1
p.K265ICOAD1
p.Q500ELUAD1
p.S233TLUSC1
p.C404WLUAD1
p.R382XPAAD1
p.A235ELUAD1
p.H342RCOAD1
p.S23YSTAD1
p.V492IUCEC1
p.E394KUCEC1
p.G375ECHOL1
p.Q48HACC1
p.E323KSKCM1
p.S323FSKCM1
p.S264FSKCM1
p.R464KLUSC1
p.S493LSKCM1
p.R358*PAAD1
p.K450IUCEC1
p.L261PSKCM1
p.V118MCOAD1
p.H47QBLCA1
p.A348TTHYM1
p.E394KESCA1
p.G265*LUAD1
p.D447YSTAD1
p.S393YLUAD1
p.G375EPAAD1
p.H16RSTAD1
p.Q337*BLCA1
p.F483ILUAD1
p.S107LBLCA1
p.R525LDLBC1
p.D410NESCA1
p.S232LSKCM1
p.A61TUCEC1


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TissGeneCNV for NOX4

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for NOX4

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
TCGAfusionPortalPRADABRCATCGA-A1-A0SJ-01AZFP91-NOX4In-frameChr11:58352357Chr11:89088211
TCGAfusionPortalPRADABRCATCGA-BH-A18L-01ALRP5-NOX4Out-of-frameChr11:68207384Chr11:89088211
TCGAfusionPortalPRADABRCATCGA-E9-A229-01ANFRKB-NOX4Out-of-frameChr11:129755330Chr11:89135710


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TissGeneNet for NOX4

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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COAD (tumor)COAD (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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HNSC (tumor)HNSC (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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KICH (tumor)KICH (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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KIRC (tumor)KIRC (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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KIRP (tumor)KIRP (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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LIHC (tumor)LIHC (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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LUAD (tumor)LUAD (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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LUSC (tumor)LUSC (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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PRAD (tumor)PRAD (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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STAD (tumor)STAD (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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THCA (tumor)THCA (normal)
NOX4, RELA, TLR4 (tumor)NOX4, RELA, TLR4 (normal)
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TissGeneProg for NOX4

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for NOX4
TissGeneDrug for NOX4

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for NOX4

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0011881Diabetic Nephropathy6BeFree,RGD
umls:C0011847Diabetes4BeFree
umls:C0011849Diabetes Mellitus4BeFree
umls:C0017636Glioblastoma4BeFree
umls:C0022116Ischemia4BeFree
umls:C0235974Pancreatic carcinoma4BeFree
umls:C0239946Fibrosis, Liver4BeFree
umls:C0346647Malignant neoplasm of pancreas4BeFree
umls:C2239176Liver carcinoma4BeFree
umls:C0007102Malignant tumor of colon3BeFree
umls:C0020456Hyperglycemia3BeFree
umls:C0020538Hypertensive disease3LHGDN,RGD
umls:C0020542Pulmonary Hypertension3BeFree,LHGDN
umls:C0025202melanoma3BeFree
umls:C0030297Pancreatic Neoplasm3LHGDN
umls:C0007131Non-Small Cell Lung Carcinoma2BeFree
umls:C0007134Renal Cell Carcinoma2BeFree
umls:C0007222Cardiovascular Diseases2BeFree
umls:C0018801Heart failure2BeFree,CTD_human
umls:C0019196Hepatitis C2BeFree
umls:C0022661Kidney Failure, Chronic2BeFree,CTD_human
umls:C0027430Nasal Polyps2BeFree
umls:C0152171Idiopathic pulmonary hypertension2BeFree
umls:C0178874Tumor Progression2BeFree
umls:C0596263Carcinogenesis2BeFree
umls:C0699790Colon Carcinoma2BeFree
umls:C1800706Idiopathic Pulmonary Fibrosis2BeFree
umls:C3203102Idiopathic pulmonary arterial hypertension2BeFree
umls:C0002736Amyotrophic Lateral Sclerosis1GAD
umls:C0002940Aneurysm1RGD
umls:C0003130Anoxia1LHGDN
umls:C0003486Aortic Aneurysm1BeFree
umls:C0004096Asthma1BeFree,LHGDN
umls:C0004114Astrocytoma1BeFree
umls:C0006142Malignant neoplasm of breast1BeFree
umls:C0009375Colonic Neoplasms1CTD_human
umls:C0010054Coronary Arteriosclerosis1BeFree
umls:C0011853Diabetes Mellitus, Experimental1RGD
umls:C0011854Diabetes Mellitus, Insulin-Dependent1BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent1GAD
umls:C0011875Diabetic Angiopathies1BeFree
umls:C0016781Fuchs Endothelial Dystrophy1BeFree
umls:C0017638Glioma1BeFree,LHGDN
umls:C0018802Congestive heart failure1BeFree
umls:C0019693HIV Infections1GAD
umls:C0020459Hyperinsulinism1BeFree
umls:C0022660Kidney Failure, Acute1BeFree
umls:C0022665Kidney Neoplasm1BeFree
umls:C0023418leukemia1LHGDN
umls:C0023890Liver Cirrhosis1GAD
umls:C0023903Liver neoplasms1BeFree
umls:C0026636Mouth Diseases1BeFree
umls:C0027627Neoplasm Metastasis1BeFree
umls:C0027796Neuralgia1BeFree
umls:C0029456Osteoporosis1BeFree
umls:C0034069Pulmonary Fibrosis1BeFree
umls:C0035126Reperfusion Injury1RGD
umls:C0035309Retinal Diseases1BeFree
umls:C0038454Cerebrovascular accident1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0042373Vascular Diseases1BeFree
umls:C0153676Secondary malignant neoplasm of lung1BeFree
umls:C0153690Secondary malignant neoplasm of bone1BeFree
umls:C0154830Proliferative diabetic retinopathy1BeFree
umls:C0162770Right Ventricular Hypertrophy1BeFree
umls:C0206715Neoplasms, Neuroepithelial1BeFree
umls:C0241910Hepatitis, Autoimmune1BeFree
umls:C0242379Malignant neoplasm of lung1BeFree
umls:C0278996Cancer of Head and Neck1BeFree
umls:C0279000Liver and Intrahepatic Biliary Tract Carcinoma1BeFree
umls:C0280100Solid tumour1BeFree
umls:C0281361Adenocarcinoma of pancreas1BeFree
umls:C0338106Adenocarcinoma of colon1BeFree
umls:C0345904Malignant neoplasm of liver1BeFree
umls:C0524620Metabolic Syndrome X1BeFree
umls:C0524910Hepatitis C, Chronic1BeFree
umls:C0549473Thyroid carcinoma1BeFree
umls:C0600452Hepatopulmonary Syndrome1GAD
umls:C0678222Breast Carcinoma1BeFree
umls:C0684249Carcinoma of lung1BeFree
umls:C0686619Secondary malignant neoplasm of lymph node1BeFree
umls:C0856169Endothelial dysfunction1BeFree
umls:C0876973Infectious disease of lung1BeFree
umls:C0919267ovarian neoplasm1BeFree
umls:C1168401Squamous cell carcinoma of the head and neck1BeFree
umls:C1335302Pancreatic Ductal Adenocarcinoma1BeFree
umls:C1397307Cardiac fibrosis1BeFree
umls:C1458155Mammary Neoplasms1BeFree
umls:C1512409Hepatocarcinogenesis1BeFree
umls:C2711227Steatohepatitis1BeFree
umls:C2931852Clear-cell metastatic renal cell carcinoma1BeFree
umls:C3241937Nonalcoholic Steatohepatitis1BeFree