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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for PKHD1
check button Gene summary
Basic gene informationGene symbolPKHD1
Gene namepolycystic kidney and hepatic disease 1 (autosomal recessive)
SynonymsARPKD|FCYT|TIGM1
CytomapUCSC genome browser: 6p12.2
Type of geneprotein-coding
RefGenesNM_138694.3,
NM_170724.2,
DescriptionTIG multiple domains 1fibrocystinpolycystic kidney and hepatic disease 1 proteinpolyductintigmin
Modification date20141219
dbXrefs MIM : 606702
HGNC : HGNC
Ensembl : ENSG00000170927
HPRD : 05987
Vega : OTTHUMG00000014841
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_PKHD1
BioGPS: 5314
PathwayNCI Pathway Interaction Database: PKHD1
KEGG: PKHD1
REACTOME: PKHD1
Pathway Commons: PKHD1
ContextiHOP: PKHD1
ligand binding site mutation search in PubMed: PKHD1
UCL Cancer Institute: PKHD1
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Kidney
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)KIRC,KIRP,KICH
Reference showing the relevant tissue of PKHD1
Description by TissGene annotationsCancer gene
Have significant anti-correlated miRNA
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for PKHD1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LIHC2.4272589024.731460902-2.3042028.46E-074.57E-06
KIRC6.7323477358.571857458-1.8395097227.27E-122.87E-11
KICH1.2064009028.403992902-7.1975921.75E-132.38E-12
STAD0.891998777-0.5060137231.39801250.01540.048103611
KIRP7.3991769028.499742527-1.1005656250.002110.005357441


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TissGene-miRNA for PKHD1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
LUADhsa-miR-150-5pMIMAT00004510.016-0.3160


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TissGeneMut for PKHD1
TissGeneSNV for PKHD1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.T777MSTAD2
p.R2714LLUAD2
p.D1873YUCEC2
p.S826FSKCM2
p.R1081HSTAD2
p.S3776FSKCM2
p.H459YSKCM2
p.P2677LSKCM2
p.S132FSKCM2
p.E704KSKCM2
p.V2514LLUAD1
p.M1886VLUAD1
p.A1267TSTAD1
p.R1541KSKCM1
p.S1217*HNSC1
p.E1045KUCEC1
p.R793HUCEC1
p.S4043NCESC1
p.Q4048PBRCA1
p.D1944EBRCA1
p.V933ISKCM1
p.A2729THNSC1
p.D3230NUCEC1
p.D3668VKIRP1
p.Y388CCOAD1
p.V2913LCOAD1
p.L2679VCESC1
p.E2148*SARC1
p.S1066LTHCA1
p.M2173ILUAD1
p.S1458FSKCM1
p.G1971SLUSC1
p.A2521SOV1
p.T36MPRAD1
p.R1909WSTAD1
p.R3913CGBM1
p.E2001KUCEC1
p.S2627FHNSC1
p.G634DSKCM1
p.N2509HUCEC1
p.A1987TCESC1
p.S3718*BLCA1
p.G1558ESKCM1
p.E2915KUCEC1
p.I3042TPRAD1
p.N1135KESCA1
p.W646XSKCM1
p.E3502VKIRP1
p.S1727LBLCA1
p.G112VLUAD1
p.R1926LLUAD1
p.R723HKIRC1
p.R2955QUCEC1
p.R880LLUAD1
p.L1989FGBM1
p.R3482CREAD1
p.D912YCOAD1
p.I2523VCOAD1
p.G369RSKCM1
p.R1723TKIRP1
p.E3391*STAD1
p.N2300SSARC1
p.T1958SBLCA1
p.S3718LBLCA1
p.V1181FLGG1
p.P3845QLUAD1
p.E2746KBLCA1
p.I4070VUCEC1
p.P1451ACHOL1
p.W646*SKCM1
p.K2450RLGG1
p.E3162DREAD1
p.E1025*SKCM1
p.R2181SLUAD1
p.Q807KSTAD1
p.F3153LPRAD1
p.D2424YSTAD1
p.L3127FSTAD1
p.L3053VESCA1
p.K2856NSTAD1
p.I194MLUSC1
p.R564QSKCM1
p.F2516LUCEC1
p.L3503PGBM1
p.P2778SLGG1
p.P2462HSTAD1
p.G1218XREAD1
p.P3762SSKCM1
p.H3599LSKCM1
p.L859MLIHC1
p.L2178VLUSC1
p.R3240QUCEC1
p.E3054DPRAD1
p.V1990ISKCM1
p.S3113YLUSC1
p.G3918ESKCM1
p.D662VLUAD1
p.P1258RLIHC1
p.I2539TLIHC1
p.R2979QPAAD1
p.G2310ESKCM1
p.Q3397LACC1
p.S1236YLUSC1
p.P1355SHNSC1
p.S1534THNSC1
p.G1951SBLCA1
p.L1334PLUSC1
p.I277MBLCA1
p.Q1611HUCEC1
p.V2429ISARC1
p.E2309KCOAD1
p.A3497VLIHC1
p.G2184VACC1
p.V79FSKCM1
p.Q3941KSKCM1
p.R2634KUCEC1
p.N2257TUCEC1
p.R3913HESCA1
p.F3006LCESC1
p.S1562FBLCA1
p.R488QESCA1
p.R2536IREAD1
p.S1844FSKCM1
p.L3495FSKCM1
p.V1302ILUAD1
p.W3576RLUAD1
p.G1497ELUAD1
p.S4035NSKCM1
p.L1837ILUSC1
p.L3496WOV1
p.V2805IMESO1
p.L1096IBLCA1
p.T3142NLUAD1
p.R2891CTHCA1
p.I2523LUCEC1
p.S2180YLUSC1
p.F2780LSTAD1
p.R994WHNSC1
p.A243TCOAD1
p.V2963ISTAD1
p.R669HSKCM1
p.F2779LUCEC1
p.K2976RKIRC1
p.A1062TSTAD1
p.S3867CBLCA1
p.L3563VSTAD1
p.S3286RSTAD1
p.M3400TLUSC1
p.P2024LLUSC1
p.K3856TSTAD1
p.G619SLUSC1
p.G1034VPAAD1
p.A3793ESTAD1
p.Q225HLUAD1
p.I3462VLUAD1
p.G2294EUCEC1
p.N1016HCOAD1
p.M1373ILUAD1
p.I3595MHNSC1
p.I2324MLUAD1
p.V2853DBRCA1
p.L3415FDLBC1
p.V2330AUCEC1
p.L4044VUCEC1
p.E3605KBLCA1
p.V806ALIHC1
p.P3892SUCEC1
p.A1279TLUAD1
p.T441SLUAD1
p.V2397FUCEC1
p.S1400LHNSC1
p.R606PLUSC1
p.P738SSKCM1
p.A722TLUAD1
p.A2515VSTAD1
p.G466WLUAD1
p.D1424HOV1
p.E2821GREAD1
p.V1990GSKCM1
p.A134VGBM1
p.S1042FLUSC1
p.V1409LLUAD1
p.A462TLUAD1
p.R1115KLUAD1
p.T2938MLUAD1
p.L3481FLIHC1
p.T710SHNSC1
p.V3206LACC1
p.C2368FLUAD1
p.M1134ISKCM1
p.R3842XREAD1
p.Q370KLUAD1
p.V1269LLUAD1
p.L1190FTHCA1
p.G698SKIRP1
p.E1949GLUAD1
p.L1963FSKCM1
p.P2004LKIRC1
p.D3808HBRCA1
p.G2403CHNSC1
p.R2926QCESC1
p.E2621DUCEC1
p.S3977FHNSC1
p.S3492ALUAD1
p.G1597CCOAD1
p.S259*BLCA1
p.D170NHNSC1
p.A1681EPRAD1
p.R3482CESCA1
p.G55DHNSC1
p.H216NKIRC1
p.P1707SSKCM1
p.L3865QGBM1
p.R3914*GBM1
p.D251NSKCM1
p.C1204RLGG1
p.S1222NUCEC1
p.E1594KLUAD1
p.R781*SKCM1
p.I2283VUCEC1
p.E3251*LUAD1
p.Q4071RLUAD1
p.F582LACC1
p.G1474RSKCM1
p.E1482VSKCM1
p.S3646PSKCM1
p.E2746VBLCA1
p.S1400LCOAD1
p.V2897ILAML1
p.V3818FLUSC1
p.S1285NDLBC1
p.S98FPAAD1
p.S2934IPRAD1
p.P3987AGBM1
p.E2309KDLBC1
p.S1678*UCEC1
p.S2964LSKCM1
p.G2918DLUAD1
p.K2460*SKCM1
p.F1221LCESC1
p.R2714WTHYM1
p.V88MHNSC1
p.V1127AUCEC1
p.H3109NLUAD1
p.S1182RTHYM1
p.A1037DSTAD1
p.N3063KLUAD1
p.S3492FSKCM1
p.A2729GACC1
p.G2333_spliceLUSC1
p.T1251NGBM1
p.L3495FLUAD1
p.G315ESKCM1
p.P2327HTHYM1
p.Q1256KSKCM1
p.R592*ACC1
p.G1449DSKCM1
p.V2935LUCEC1
p.G2951RLUSC1
p.R3482HPRAD1
p.R3240QUCS1
p.R564*CHOL1
p.L4044VOV1
p.F3153LKIRC1
p.G2310RSKCM1
p.E765KSKCM1
p.G725VLUAD1
p.G1587DUCEC1
p.Q1539HLUAD1
p.V65MMESO1
p.M2455VREAD1
p.H3267NBLCA1
p.A1729SLUSC1
p.R2945HCOAD1
p.A601TUCEC1
p.K2085NKIRC1
p.M3400ILUSC1
p.N977DLIHC1
p.W391*HNSC1
p.V302MKIRC1
p.R3615KBLCA1
p.R1624WGBM1
p.D3321YCOAD1
p.A1711TSTAD1
p.E1197DSTAD1
p.S3794ASKCM1
p.P190LSKCM1
p.T1742MSTAD1
p.E1309*UCEC1
p.S1633FSKCM1
p.R880HTHYM1
p.P3783RLGG1
p.G2073VPRAD1
p.V712LOV1
p.L478MSARC1
p.F380CKIRP1
p.Q393*LUSC1
p.E3529KSKCM1
p.P1097LSKCM1
p.R3842*SKCM1
p.Q2405KKIRP1
p.P2778LSKCM1
p.T849NGBM1
p.V139IGBM1
p.Q504ELUAD1
p.G1437RLUAD1
p.G2748CKICH1
p.S1056WLUSC1
p.V2189ALUAD1
p.R669HGBM1
p.S2306FBLCA1
p.P3221LSARC1
p.A748ESTAD1
p.E4004GSTAD1
p.L3179FSKCM1
p.D3266YSTAD1
p.P918QTHYM1
p.A3224DLUSC1
p.L213PPRAD1
p.S1353CBRCA1
p.D125ELUSC1
p.G3676EGBM1
p.P3896TLUSC1
p.K2460QCOAD1
p.I3909MLIHC1
p.Y350FHNSC1
p.D3230HLUAD1
p.V595FLIHC1
p.E3391XSTAD1
p.R3556HBRCA1
p.E3656KSKCM1
p.W2280*SKCM1
p.E2980*PAAD1
p.E1244KSKCM1
p.I3106FLUAD1
p.A3011TSTAD1
p.A3207VTGCT1
p.V2236MPAAD1
p.I3394LKIRP1
p.H3944RSTAD1
p.D317YREAD1
p.S3234FSKCM1
p.P81LSKCM1
p.G2307SGBM1
p.A2130TREAD1
p.D912NHNSC1
p.P27HLUSC1
p.S2017FLUAD1
p.E2821GSTAD1
p.T275KESCA1
p.N1602HLGG1
p.H3647YSKCM1
p.E769DUCEC1
p.D3321HBLCA1
p.P1762QCOAD1
p.K640NREAD1
p.K2917ESTAD1
p.R3914*SKCM1
p.W1725LLUAD1
p.I3590VBLCA1
p.G1712WLUAD1
p.T1742MCOAD1
p.I2883VSTAD1
p.R3842XSKCM1
p.L193FLUAD1
p.G1010RSKCM1
p.A1260VKIRP1
p.P989LSKCM1
p.E563KSKCM1
p.V3043LLGG1
p.V3193IREAD1
p.L1983RCOAD1
p.D1957GBLCA1
p.G3532DSKCM1
p.K3324NLUSC1
p.S4047FSKCM1
p.S3718PLIHC1
p.V3634IACC1
p.R3913CSTAD1
p.P724TCOAD1
p.A1987TGBM1
p.F3212SBLCA1
p.P3328SSKCM1
p.S3787LSKCM1
p.G3045DCOAD1
p.Y610NACC1
p.M3068ICESC1
p.I1082VLGG1
p.H2520NCESC1
p.V419IREAD1
p.S1426*LUSC1
p.R2413HUCEC1
p.I3042VLUAD1
p.P1900SUCEC1
p.A1890ELUAD1
p.A1005DLUSC1
p.F671LLUAD1
p.R3333_spliceGBM1
p.W1248*HNSC1
p.L1106ILGG1
p.H533QLUAD1
p.L3275PSTAD1
p.S3570LLUAD1
p.G1467RSKCM1
p.A2579VPRAD1
p.A878GLUSC1
p.P463TUCEC1
p.E3995DREAD1
p.F2259LLUSC1
p.K640NPRAD1
p.S3833FESCA1
p.P3762QLGG1
p.A3564VSKCM1
p.R1927SLIHC1
p.P786SSTAD1
p.D43NHNSC1
p.S3443GBLCA1
p.Y452NLIHC1
p.S1856*LUSC1
p.H3124NBLCA1
p.I3414SSTAD1
p.E2915*UCEC1
p.G952ESKCM1
p.V2236LPCPG1
p.G1187ESTAD1
p.G1801CSTAD1
p.N2363ILUAD1
p.P3850SLUAD1
p.I3538SSTAD1
p.Q716EBLCA1
p.S1551*UCS1
p.G3809CLUAD1
p.T777MHNSC1
p.G2566XCOAD1
p.R669CCOAD1
p.S2219LSKCM1
p.G3027SCOAD1
p.L3689XREAD1
p.F4060LBLCA1
p.D2069YLUAD1
p.A1268DLUSC1
p.L1015IACC1
p.W2290SLGG1
p.Y2650CUCEC1
p.N3090IKIRP1
p.R1223SLUAD1
p.W3260XCOAD1
p.G349RHNSC1
p.D1542ALIHC1
p.V1716IHNSC1
p.Q3504HBRCA1
p.M1825TSTAD1
p.E3391KUCS1
p.R994QUCEC1
p.S228ILUAD1
p.L2871IUCEC1
p.V1903FBLCA1
p.H2520NTHYM1
p.R3961GLUAD1
p.R3350GLIHC1
p.K411NKIRP1
p.R994WSKCM1
p.L252VHNSC1
p.P875AOV1
p.N3940YBRCA1
p.G942RLUSC1
p.G919VLUAD1
p.L3485ICOAD1
p.G2941SLUSC1
p.A3376SKIRC1
p.G766ESKCM1
p.P3845TLUAD1
p.E1891KBLCA1
p.D251NBRCA1
p.R2573LCOAD1
p.R2955LHNSC1
p.V239GSTAD1
p.E3135KUCEC1
p.G2707CCESC1
p.S1783FBLCA1
p.P2109TSTAD1
p.P3365TTHYM1
p.V1903IHNSC1
p.A1297VLUAD1
p.D1942NBLCA1
p.N226HUCEC1
p.Q3425HSKCM1
p.S1236FSKCM1
p.I3959VPRAD1
p.R2945HUCEC1
p.E769DKIRP1
p.R3482CUCS1
p.E2980XPAAD1
p.E3582KUCEC1
p.W852*SKCM1
p.Q3056LLIHC1
p.E1907DREAD1
p.V933FACC1
p.H2845NLUAD1
p.N3152THNSC1
p.G3511VLUAD1
p.Q902KLUAD1
p.L557ICESC1
p.E3582KLUSC1
p.I3144THNSC1
p.S1566FSKCM1
p.R3240*SKCM1
p.H3049RUCEC1
p.C3405*LUSC1
p.G199ESKCM1
p.R3620CSARC1
p.K1072QOV1
p.S922CBLCA1
p.P480THNSC1
p.E2075KHNSC1
p.S2367FHNSC1
p.S2867FKIRC1
p.D1138ELUAD1
p.P442SSKCM1
p.F700LKIRC1
p.R3853KSKCM1
p.R1020ILUAD1
p.P203SSKCM1
p.T2850KTHCA1
p.R592XACC1
p.L2679IREAD1
p.R564XCHOL1
p.A3712TREAD1
p.W2280XSKCM1
p.R3637HUCEC1
p.P2072HGBM1
p.S3875RBLCA1
p.N901KLUAD1
p.R1624QBLCA1
p.M3539IHNSC1
p.K2781EKIRC1
p.G952*LUAD1
p.G4013RLUSC1
p.L84FLUAD1
p.V2223LLUSC1
p.R559QREAD1
p.R3772QTGCT1
p.I1120THNSC1
p.R589HSTAD1
p.Q984KTHYM1
p.A1987TUCEC1
p.V1518LLUAD1
p.V2076FREAD1
p.I246VLUSC1
p.Q1307RLIHC1
p.P3834SLUSC1
p.W158XTHYM1
p.F80SGBM1
p.L2651PKIRP1
p.S1283PSKCM1
p.G2849*LUSC1
p.R2298*HNSC1
p.M2348ILUAD1
p.E3554KSKCM1
p.R2769IUCEC1
p.C1800YCOAD1
p.A1510VLGG1
p.W3255RSTAD1
p.R1997QREAD1
p.R2979*UCEC1
p.C1625YSKCM1
p.R3237IUCEC1
p.L2540VHNSC1
p.G736ESKCM1
p.R1804HOV1
p.A2579EACC1
p.G2210RLUAD1
p.D822NGBM1
p.R585KSKCM1
p.G2997RUCEC1
p.Q687ELUSC1
p.R1235QUCEC1
p.M2614VLUAD1
p.S1534NSTAD1
p.E3928KUCEC1
p.I1192FSARC1
p.K3921QLUAD1
p.V1328DLUAD1
p.A2887TCOAD1
p.M997LACC1
p.P119LHNSC1
p.E108KSKCM1
p.F3766CSTAD1
p.R2926WCOAD1
p.S3223XKIRC1
p.S2694RLUAD1
p.I204FLUAD1
p.D958YLIHC1
p.P3236AHNSC1
p.3589_3590QI>HVBLCA1
p.S1551XUCS1
p.V3579ASTAD1
p.I2331LKIRP1
p.V3004LLUSC1
p.G1041DSKCM1
p.R2891HSARC1
p.V1552ACOAD1
p.Q3197HHNSC1


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TissGeneCNV for PKHD1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for PKHD1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0FusionScanPRADTCGA-EJ-7782-01APKHD1-CAGE1Out-of-Framechr6:51875106chr6:7334323
TCGAfusionPortalPRADAKIRCTCGA-A3-3313-01APKHD1-RCAN2Out-of-frameChr6:51695659Chr6:46216633


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TissGeneNet for PKHD1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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COAD (tumor)COAD (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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HNSC (tumor)HNSC (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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KICH (tumor)KICH (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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KIRC (tumor)KIRC (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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KIRP (tumor)KIRP (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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LIHC (tumor)LIHC (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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LUAD (tumor)LUAD (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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LUSC (tumor)LUSC (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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PRAD (tumor)PRAD (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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STAD (tumor)STAD (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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THCA (tumor)THCA (normal)
PKHD1, CAMLG (tumor)PKHD1, CAMLG (normal)
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TissGeneProg for PKHD1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for PKHD1
TissGeneDrug for PKHD1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for PKHD1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0085548Autosomal Recessive Polycystic Kidney Disease66BeFree,CLINVAR,CTD_human,LHGDN,MGD,ORPHANET,RGD,UNIPROT
umls:C0022680Polycystic Kidney Diseases14BeFree,GAD,LHGDN
umls:C1567435Polycystic Kidney - body part7BeFree
umls:C0268800Simple renal cyst5BeFree
umls:C0000768Congenital Abnormality4BeFree
umls:C0009714Hepatic Fibrosis, Congenital4BeFree
umls:C0085413Polycystic Kidney, Autosomal Dominant4BeFree
umls:C0010709Cyst2BeFree,LHGDN
umls:C0023895Liver diseases2BeFree
umls:C0002736Amyotrophic Lateral Sclerosis1GAD
umls:C0009402Colorectal Carcinoma1BeFree
umls:C0009404Colorectal Neoplasms1BeFree
umls:C0018802Congestive heart failure1BeFree
umls:C0020538Hypertensive disease1BeFree
umls:C0022658Kidney Diseases1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0035078Kidney Failure1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0162510Caroli Disease1BeFree
umls:C0267818Bile duct proliferation1BeFree
umls:C0267834Liver cyst1BeFree
umls:C0339573Glaucoma, Primary Open Angle1BeFree
umls:C0376358Malignant neoplasm of prostate1GAD
umls:C0431716Nephronophthisis - medullary cystic disease1BeFree
umls:C0442872Multiple cysts1BeFree
umls:C0595921Intraocular pressure disorder1GWASCAT
umls:C0596263Carcinogenesis1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1319315Adenocarcinoma of large intestine1BeFree
umls:C1527249Colorectal Cancer1BeFree
umls:C2911645Weight Loss Adverse Event1GWASCAT
umls:C3150344HYPERHOMOCYSTEINEMIA, THROMBOTIC, CBS-RELATED0CLINVAR