sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-OR-A5J1-01 10 88419681 88419681 G A OPN4 Missense_Mutation p.G288D 0.07 tolerated(0.62) benign(0.02) TCGA-OR-A5J1-01 12 133360652 133360652 C T GOLGA3 Intron 0.27 TCGA-OR-A5J1-01 12 9760409 9760409 C G KLRB1 Missense_Mutation p.E9D 0.41 tolerated(1) benign(0) TCGA-OR-A5J1-01 14 21991730 21991730 C T SALL2 Missense_Mutation p.R711Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J1-01 15 40587141 40587141 C T PLCB2 Silent p.T634T 0.46 TCGA-OR-A5J1-01 15 76467904 76467904 C - C15orf27 Frame_Shift_Del p.Y219* 0.37 TCGA-OR-A5J1-01 16 87742934 87742934 C T KLHDC4 Missense_Mutation p.D462N 0.27 deleterious(0) probably_damaging(1) TCGA-OR-A5J1-01 17 1543262 1543262 C T SCARF1 Silent p.G361G 0.33 TCGA-OR-A5J1-01 17 65734087 65734087 A C NOL11 Missense_Mutation p.S510R 0.45 deleterious(0.02) benign(0.037) TCGA-OR-A5J1-01 18 21461949 21461949 G A LAMA3 Missense_Mutation p.G1721D 0.44 probably_damaging(0.989) TCGA-OR-A5J1-01 18 54348602 54348602 T C WDR7 Missense_Mutation p.C109R 0.25 tolerated(0.26) probably_damaging(0.94) TCGA-OR-A5J1-01 19 2790453 2790453 G A THOP1 Silent p.P17P 0.55 TCGA-OR-A5J1-01 19 4210319 4210319 C T ANKRD24 Silent p.L337L 0.44 TCGA-OR-A5J1-01 19 43968541 43968541 C A LYPD3 Missense_Mutation p.M49I 0.13 tolerated(0.11) benign(0.01) TCGA-OR-A5J1-01 19 43968550 43968550 C T LYPD3 Silent p.P46P 0.13 TCGA-OR-A5J1-01 1 11561526 11561526 G A PTCHD2 Silent p.L159L 0.37 TCGA-OR-A5J1-01 1 12309384 12309384 T G VPS13D Silent p.A184A 0.42 TCGA-OR-A5J1-01 1 33820015 33820015 C T PHC2 Silent p.P514P 0.44 TCGA-OR-A5J1-01 1 47905517 47905517 C T FOXD2 3'UTR 0.10 TCGA-OR-A5J1-01 20 35696518 35696518 C T RBL1 Missense_Mutation p.R121H 0.09 deleterious(0.02) probably_damaging(1) TCGA-OR-A5J1-01 2 179501161 179501161 T C TTN Missense_Mutation p.K13765E 0.44 TCGA-OR-A5J1-01 2 25505395 25505395 T A DNMT3A Silent p.A121A 0.43 TCGA-OR-A5J1-01 3 12779634 12779634 C G TMEM40 Splice_Site p.X142_splice 0.39 TCGA-OR-A5J1-01 3 42265106 42265106 C T TRAK1 Silent p.G913G 0.44 TCGA-OR-A5J1-01 3 44636740 44636740 G A ZNF660 3'UTR 0.35 TCGA-OR-A5J1-01 4 104640739 104640739 C - TACR3 Frame_Shift_Del p.A32Rfs*85 0.36 TCGA-OR-A5J1-01 4 114277261 114277261 C G ANK2 Missense_Mutation p.T2496R 0.38 possibly_damaging(0.625) TCGA-OR-A5J1-01 4 118006510 118006519 GAACGGGGGG - TRAM1L1 Frame_Shift_Del p.P11Sfs*127 0.46 TCGA-OR-A5J1-01 4 54231383 54231383 T G SCFD2 Missense_Mutation p.L242F 0.48 tolerated(0.1) benign(0.023) TCGA-OR-A5J1-01 4 79399070 79399070 G A FRAS1 Missense_Mutation p.M2651I 0.42 benign(0.206) TCGA-OR-A5J1-01 5 136973018 136973018 G A KLHL3 Missense_Mutation p.T429M 0.46 deleterious(0.01) probably_damaging(0.943) TCGA-OR-A5J1-01 5 161300197 161300197 C T GABRA1 Silent p.V110V 0.10 TCGA-OR-A5J1-01 6 110714258 110714258 T G DDO Missense_Mutation p.E277A 0.49 tolerated(0.31) benign(0.013) TCGA-OR-A5J1-01 6 26031919 26031919 C G HIST1H3B Missense_Mutation p.D124H 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.826) TCGA-OR-A5J1-01 6 31378525 31378525 C T MICA Silent p.N92N 0.47 TCGA-OR-A5J1-01 7 127954955 127954955 G A RBM28 Missense_Mutation p.P636L 0.36 tolerated(0.31) benign(0.001) TCGA-OR-A5J1-01 7 150647026 150647026 C G KCNH2 Intron 0.31 TCGA-OR-A5J1-01 9 132395087 132395087 C T NTMT1 Silent p.G35G 0.42 TCGA-OR-A5J1-01 9 139272547 139272547 C T SNAPC4 Silent p.Q1244Q 0.33 TCGA-OR-A5J1-01 X 101409174 101409174 C T BEX5 Missense_Mutation p.A22T 0.93 tolerated(0.35) benign(0.002) TCGA-OR-A5J1-01 X 153640419 153640419 C T TAZ Intron 0.91 TCGA-OR-A5J1-01 X 154157135 154157135 T C F8 Missense_Mutation p.T1644A 0.08 tolerated(0.08) benign(0.007) TCGA-OR-A5J2-01 10 117884831 117884831 C T GFRA1 Missense_Mutation p.R224Q 0.04 deleterious(0) probably_damaging(1) TCGA-OR-A5J2-01 12 12301919 12301919 C T LRP6 Missense_Mutation p.E1055K 0.06 tolerated(0.15) benign(0) TCGA-OR-A5J2-01 12 57957244 57957244 G A KIF5A Missense_Mutation p.R51H 0.12 tolerated(0.12) benign(0.01) TCGA-OR-A5J2-01 12 76741456 76741459 TCTG - BBS10 Frame_Shift_Del p.D102Efs*6 0.52 TCGA-OR-A5J2-01 13 53237236 53237236 G T SUGT1 Nonsense_Mutation p.E162* 0.25 TCGA-OR-A5J2-01 14 31598273 31598273 A T HECTD1 Missense_Mutation p.V1435D 0.78 tolerated(0.11) benign(0.07) TCGA-OR-A5J2-01 15 63017231 63017231 G A TLN2 Silent p.T1061T 0.16 TCGA-OR-A5J2-01 15 85664025 85664025 C A PDE8A Intron 0.81 TCGA-OR-A5J2-01 16 4747041 4747041 C G ANKS3 Missense_Mutation p.W653C 0.67 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5J2-01 17 32614719 32614719 A G CCL11 3'UTR 0.66 TCGA-OR-A5J2-01 17 7578415 7578428 ACCTCCGTCATGTG - TP53 Frame_Shift_Del p.H168Cfs*8 0.76 TCGA-OR-A5J2-01 18 21464756 21464756 G T LAMA3 Missense_Mutation p.V1748L 0.10 benign(0.042) TCGA-OR-A5J2-01 19 44515611 44515611 A T ZNF230 Missense_Mutation p.M474L 0.31 tolerated_low_confidence(0.21) benign(0) TCGA-OR-A5J2-01 19 49245556 49245556 C T IZUMO1 Silent p.V170V 0.80 TCGA-OR-A5J2-01 1 11561189 11561189 G A PTCHD2 Missense_Mutation p.R47Q 0.89 tolerated_low_confidence(0.07) benign(0.255) TCGA-OR-A5J2-01 1 117150771 117150771 C T IGSF3 Missense_Mutation p.E339K 0.79 deleterious(0.03) possibly_damaging(0.869) TCGA-OR-A5J2-01 1 211846871 211846871 G A NEK2 Missense_Mutation p.T170M 0.21 deleterious(0.02) possibly_damaging(0.764) TCGA-OR-A5J2-01 1 54678298 54678298 C T MRPL37 Silent p.G319G 0.86 TCGA-OR-A5J2-01 20 48562681 48562681 C T RNF114 Missense_Mutation p.P136L 0.46 deleterious(0) probably_damaging(0.99) TCGA-OR-A5J2-01 20 61470085 61470085 C T COL9A3 Silent p.D612D 0.04 TCGA-OR-A5J2-01 20 62303930 62303930 G T RTEL1 Missense_Mutation p.D265Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-OR-A5J2-01 22 45691450 45691450 G A UPK3A Silent p.G238G 0.78 TCGA-OR-A5J2-01 2 141298589 141298589 C A LRP1B Missense_Mutation p.C2489F 0.80 benign(0.308) TCGA-OR-A5J2-01 3 122418659 122418659 G A PARP14 Missense_Mutation p.D420N 0.15 tolerated(0.1) benign(0.055) TCGA-OR-A5J2-01 3 190030751 190030751 C T CLDN1 Missense_Mutation p.V100I 0.18 tolerated(0.4) benign(0.049) TCGA-OR-A5J2-01 3 41266091 41266092 - A CTNNB1 Nonsense_Mutation p.Y30* 0.35 TCGA-OR-A5J2-01 3 45135039 45135039 G A CDCP1 Missense_Mutation p.P453S 0.47 deleterious(0.02) probably_damaging(1) TCGA-OR-A5J2-01 3 74316498 74316498 C A CNTN3 Missense_Mutation p.W912C 0.17 deleterious(0) probably_damaging(1) TCGA-OR-A5J2-01 4 128754040 128754040 T G HSPA4L 3'UTR 0.84 TCGA-OR-A5J2-01 4 3949918 3949918 C G FAM86EP RNA 0.21 TCGA-OR-A5J2-01 5 140019028 140019028 G A TMCO6 5'UTR 0.06 TCGA-OR-A5J2-01 5 6753081 6753081 C T PAPD7 Silent p.H455H 0.84 TCGA-OR-A5J2-01 6 143095218 143095218 T C HIVEP2 Missense_Mutation p.I220V 0.69 tolerated(1) benign(0.006) TCGA-OR-A5J2-01 6 24358335 24358337 GAG C KAAG1 3'UTR 0.81 TCGA-OR-A5J2-01 6 41130834 41130834 A T TREM2 5'UTR 0.40 TCGA-OR-A5J2-01 6 44221557 44221557 T G HSP90AB1 3'UTR 0.84 TCGA-OR-A5J2-01 7 103276868 103276868 G A RELN Missense_Mutation p.T706I 0.15 deleterious(0.04) possibly_damaging(0.642) TCGA-OR-A5J2-01 7 83032010 83032010 C T SEMA3E Missense_Mutation p.E361K 0.14 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J2-01 8 1645390 1645390 C T DLGAP2 Silent p.D878D 0.84 TCGA-OR-A5J2-01 X 123787622 123787622 C A TENM1 Nonsense_Mutation p.G394* 0.45 TCGA-OR-A5J2-01 X 153577797 153577797 C A FLNA Missense_Mutation p.K2563N 0.37 tolerated(0.08) possibly_damaging(0.543) TCGA-OR-A5J2-01 X 39913284 39913284 C A BCOR Nonsense_Mutation p.E1611* 0.08 TCGA-OR-A5J2-01 X 47006836 47006836 C T RBM10 5'UTR 0.13 TCGA-OR-A5J2-01 X 8763159 8763159 T A FAM9A Missense_Mutation p.E264V 0.13 deleterious_low_confidence(0.04) unknown(0) TCGA-OR-A5J2-01 X 89177681 89177681 C A TGIF2LX Silent p.S199S 0.38 TCGA-OR-A5J3-01 10 112540915 112540915 C T RBM20 Missense_Mutation p.S183F 0.82 deleterious(0.01) possibly_damaging(0.766) TCGA-OR-A5J3-01 10 5568135 5568135 G T CALML3 3'UTR 0.07 TCGA-OR-A5J3-01 11 100095508 100095508 G T CNTN5 Missense_Mutation p.D657Y 0.91 deleterious(0) probably_damaging(1) TCGA-OR-A5J3-01 11 125647236 125647236 A G PATE2 3'UTR 0.84 TCGA-OR-A5J3-01 12 81777846 81777846 T C PPFIA2 Missense_Mutation p.K314E 0.29 deleterious(0.01) probably_damaging(0.923) TCGA-OR-A5J3-01 17 10608472 10608472 G A ADPRM Missense_Mutation p.D77N 0.89 deleterious(0) probably_damaging(1) TCGA-OR-A5J3-01 19 932572 932572 C G ARID3A Missense_Mutation p.R175G 0.32 deleterious(0.03) benign(0.445) TCGA-OR-A5J3-01 1 1273448 1273448 C T DVL1 Silent p.Q516Q 0.85 TCGA-OR-A5J3-01 21 34634996 34634996 G A IFNAR2 Intron 0.43 TCGA-OR-A5J3-01 22 21088807 21088807 G A PI4KA Missense_Mutation p.T1259M 0.05 deleterious(0) possibly_damaging(0.716) TCGA-OR-A5J3-01 2 26537397 26537397 A G GPR113 Silent p.L339L 0.88 TCGA-OR-A5J3-01 2 27478154 27478154 C A SLC30A3 3'UTR 0.05 TCGA-OR-A5J3-01 3 52255624 52255624 G T TLR9 Missense_Mutation p.A1057E 0.07 tolerated(0.68) probably_damaging(0.964) TCGA-OR-A5J3-01 5 13870993 13870993 G T DNAH5 Missense_Mutation p.F1239L 0.42 benign(0.153) TCGA-OR-A5J3-01 5 140255099 140255099 G C PCDHA12 Silent p.L14L 0.37 TCGA-OR-A5J3-01 5 64878975 64878975 T A PPWD1 Silent p.P487P 0.52 TCGA-OR-A5J3-01 6 51920393 51920393 A T PKHD1 Missense_Mutation p.Y610N 0.88 deleterious(0) possibly_damaging(0.796) TCGA-OR-A5J3-01 8 26623467 26623467 C G ADRA1A Intron 0.76 TCGA-OR-A5J3-01 X 78426661 78426661 C T GPR174 Nonsense_Mutation p.R53* 0.83 TCGA-OR-A5J4-01 10 118354303 118354303 C A PNLIPRP1 Missense_Mutation p.A131D 0.35 tolerated(0.06) benign(0.019) TCGA-OR-A5J4-01 10 127344435 127344435 T C TEX36 3'UTR 0.29 TCGA-OR-A5J4-01 10 127693588 127693588 G A FANK1 Silent p.V225V 0.31 TCGA-OR-A5J4-01 10 43606665 43606665 T C RET Missense_Mutation p.V425A 0.26 tolerated(0.11) benign(0.118) TCGA-OR-A5J4-01 10 77160944 77160944 C A ZNF503 Missense_Mutation p.K78N 0.26 tolerated(0.09) possibly_damaging(0.738) TCGA-OR-A5J4-01 11 118344503 118344503 G C KMT2A Missense_Mutation p.D877H 0.35 probably_damaging(0.996) TCGA-OR-A5J4-01 11 118963200 118963200 C T HMBS Silent p.R246R 0.08 TCGA-OR-A5J4-01 11 128677078 128677078 C A FLI1 Missense_Mutation p.P242H 0.41 deleterious(0) benign(0.396) TCGA-OR-A5J4-01 11 32623818 32623818 T G EIF3M Intron 0.41 TCGA-OR-A5J4-01 11 5809714 5809714 C G OR52N1 Silent p.G111G 0.71 TCGA-OR-A5J4-01 11 59807875 59807875 G A OOSP2 5'UTR 0.19 TCGA-OR-A5J4-01 11 62376216 62376216 C T EML3 Missense_Mutation p.D331N 0.19 deleterious(0) possibly_damaging(0.698) TCGA-OR-A5J4-01 11 64111938 64111938 G C CCDC88B Missense_Mutation p.R642T 0.32 tolerated_low_confidence(0.05) benign(0.118) TCGA-OR-A5J4-01 11 66272099 66272099 G A DPP3 Missense_Mutation p.G632E 0.36 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J4-01 11 66384417 66384417 C G RBM14-RBM4 Missense_Mutation p.L76V 0.10 deleterious(0) benign(0.441) TCGA-OR-A5J4-01 11 74800245 74800245 C G OR2AT4 Missense_Mutation p.A172P 0.41 tolerated(0.58) benign(0.026) TCGA-OR-A5J4-01 12 10541381 10541381 C G KLRK1 Missense_Mutation p.R10P 0.08 tolerated(0.23) benign(0.001) TCGA-OR-A5J4-01 12 131593280 131593280 A T GPR133 Missense_Mutation p.Q633H 0.80 tolerated(0.31) possibly_damaging(0.489) TCGA-OR-A5J4-01 12 25002802 25002802 T G BCAT1 Missense_Mutation p.T210P 0.35 deleterious(0.02) benign(0.218) TCGA-OR-A5J4-01 12 2614015 2614015 A G CACNA1C Missense_Mutation p.D374G 0.19 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J4-01 12 26809287 26809287 A C ITPR2 Missense_Mutation p.V796G 0.28 deleterious(0) benign(0.179) TCGA-OR-A5J4-01 12 45833607 45833607 C G RP11-438E8.2 5'Flank 0.08 TCGA-OR-A5J4-01 12 49445206 49445206 G C KMT2D Missense_Mutation p.P754A 0.26 unknown(0) TCGA-OR-A5J4-01 12 50344855 50344855 T A AQP2 Missense_Mutation p.V81D 0.29 deleterious(0) possibly_damaging(0.609) TCGA-OR-A5J4-01 12 55714972 55714972 G T OR6C1 Nonsense_Mutation p.G197* 0.27 TCGA-OR-A5J4-01 12 55714973 55714973 G T OR6C1 Missense_Mutation p.G197V 0.28 tolerated_low_confidence(0.21) benign(0.35) TCGA-OR-A5J4-01 12 56705180 56705180 C G CNPY2 Missense_Mutation p.E75Q 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-OR-A5J4-01 12 57486328 57486329 GA - NAB2 Frame_Shift_Del p.S354Hfs*14 0.22 TCGA-OR-A5J4-01 12 57577207 57577207 G T LRP1 Missense_Mutation p.G1903V 0.18 probably_damaging(1) TCGA-OR-A5J4-01 12 7882323 7882323 C A CLEC4C Missense_Mutation p.G171C 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5J4-01 12 80717566 80717566 C G OTOGL Missense_Mutation p.P1373R 0.03 deleterious(0) probably_damaging(1) TCGA-OR-A5J4-01 12 85257275 85257275 A T SLC6A15 Silent p.A587A 0.47 TCGA-OR-A5J4-01 12 8995922 8995922 G A A2ML1 Missense_Mutation p.A481T 0.23 tolerated(0.56) benign(0.158) TCGA-OR-A5J4-01 12 93202827 93202827 C T EEA1 Missense_Mutation p.E769K 0.26 deleterious(0) possibly_damaging(0.682) TCGA-OR-A5J4-01 14 21840079 21840079 T C SUPT16H Missense_Mutation p.E95G 0.34 deleterious(0.01) benign(0.033) TCGA-OR-A5J4-01 14 24524508 24524508 C A LRRC16B Missense_Mutation p.H198Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J4-01 14 24545620 24545620 C T CPNE6 Silent p.F370F 0.04 TCGA-OR-A5J4-01 14 37736243 37736243 G T MIPOL1 Silent p.R40R 0.34 TCGA-OR-A5J4-01 14 52187025 52187025 C G FRMD6 Nonsense_Mutation p.S426* 0.29 TCGA-OR-A5J4-01 14 61446459 61446459 G C TRMT5 Missense_Mutation p.Q53E 0.06 tolerated_low_confidence(0.07) benign(0.004) TCGA-OR-A5J4-01 14 75265522 75265522 A G YLPM1 Silent p.G1174G 0.27 TCGA-OR-A5J4-01 14 76452154 76452154 G C IFT43 Missense_Mutation p.E9Q 0.23 tolerated(0.05) unknown(0) TCGA-OR-A5J4-01 14 77951057 77951057 G A ISM2 Missense_Mutation p.A116V 0.27 tolerated(0.21) benign(0.032) TCGA-OR-A5J4-01 14 78203387 78203387 T A SNW1 Missense_Mutation p.N189Y 0.71 deleterious(0) possibly_damaging(0.681) TCGA-OR-A5J4-01 15 35275401 35275401 G A ZNF770 Silent p.L79L 0.51 TCGA-OR-A5J4-01 15 86286897 86286897 C A AKAP13 Missense_Mutation p.H2749N 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5J4-01 15 91450636 91450636 A G MAN2A2 Silent p.Q369Q 0.46 TCGA-OR-A5J4-01 16 19056276 19056276 G C TMC7 Missense_Mutation p.D470H 0.43 tolerated(0.13) possibly_damaging(0.572) TCGA-OR-A5J4-01 16 89985902 89985902 G A MC1R Missense_Mutation p.C79Y 0.49 deleterious(0.02) probably_damaging(0.988) TCGA-OR-A5J4-01 17 32598883 32598883 T C CCL7 3'UTR 0.52 TCGA-OR-A5J4-01 17 55123170 55123170 C A RNF126P1 RNA 0.11 TCGA-OR-A5J4-01 17 7499311 7499311 G T FXR2 Missense_Mutation p.T221K 0.40 tolerated(0.15) benign(0.177) TCGA-OR-A5J4-01 17 79899111 79899111 G A MYADML2 Silent p.I169I 0.34 TCGA-OR-A5J4-01 18 43508849 43508849 C T EPG5 Missense_Mutation p.D847N 0.07 tolerated(0.07) probably_damaging(0.981) TCGA-OR-A5J4-01 18 56939705 56939706 - T RAX Frame_Shift_Ins p.T144Nfs*7 0.28 TCGA-OR-A5J4-01 19 49131974 49131974 C G SPHK2 Missense_Mutation p.N303K 0.24 deleterious(0) probably_damaging(0.911) TCGA-OR-A5J4-01 19 49573389 49573389 G A KCNA7 Silent p.D434D 0.18 TCGA-OR-A5J4-01 19 55105904 55105904 A G LILRA1 Splice_Site p.X12_splice 0.14 TCGA-OR-A5J4-01 19 55144484 55144484 G T LILRB1 Missense_Mutation p.V326F 0.23 deleterious(0.01) benign(0.005) TCGA-OR-A5J4-01 19 55286648 55286648 G T KIR2DL1 Missense_Mutation p.Q134H 0.12 deleterious(0.04) probably_damaging(0.951) TCGA-OR-A5J4-01 19 8604874 8604874 C T MYO1F Missense_Mutation p.G550E 0.18 tolerated(0.43) benign(0.002) TCGA-OR-A5J4-01 1 112329612 112329612 C T KCND3 Missense_Mutation p.R408Q 0.22 deleterious(0.01) benign(0.238) TCGA-OR-A5J4-01 1 158641930 158641930 A G SPTA1 Silent p.H469H 0.31 TCGA-OR-A5J4-01 1 162353216 162353216 A G C1orf226 Missense_Mutation p.K231E 0.42 tolerated(1) benign(0) TCGA-OR-A5J4-01 1 168059902 168059902 C G GPR161 Silent p.L388L 0.42 TCGA-OR-A5J4-01 1 17690426 17690426 T C PADI4 3'UTR 0.20 TCGA-OR-A5J4-01 1 193111054 193111054 C A CDC73 Missense_Mutation p.T196N 0.37 tolerated(0.07) possibly_damaging(0.607) TCGA-OR-A5J4-01 1 216062269 216062269 T C USH2A Silent p.L2574L 0.42 TCGA-OR-A5J4-01 1 75684227 75684227 G A SLC44A5 Missense_Mutation p.P493S 0.30 deleterious(0.05) probably_damaging(0.99) TCGA-OR-A5J4-01 1 97564178 97564178 C T DPYD Missense_Mutation p.S878N 0.48 tolerated(0.4) benign(0.001) TCGA-OR-A5J4-01 20 34776286 34776286 C T EPB41L1 Silent p.D297D 0.24 TCGA-OR-A5J4-01 20 35242711 35242711 T C SLA2 Missense_Mutation p.D221G 0.17 deleterious(0.02) possibly_damaging(0.686) TCGA-OR-A5J4-01 20 36869832 36869832 G T KIAA1755 Missense_Mutation p.A234D 0.33 tolerated(0.29) benign(0.014) TCGA-OR-A5J4-01 21 40188949 40188949 G T ETS2 Nonsense_Mutation p.E175* 0.37 TCGA-OR-A5J4-01 22 38131006 38131006 C A TRIOBP Missense_Mutation p.P1555T 0.18 tolerated_low_confidence(0.06) benign(0.023) TCGA-OR-A5J4-01 22 38483228 38483230 CCT - BAIAP2L2 In_Frame_Del p.E387del 0.16 TCGA-OR-A5J4-01 22 41075522 41075522 A G MCHR1 Missense_Mutation p.T25A 0.27 tolerated_low_confidence(0.68) benign(0) TCGA-OR-A5J4-01 22 50198009 50198009 C A BRD1 Splice_Site p.X456_splice 0.36 TCGA-OR-A5J4-01 22 51019907 51019907 G T CHKB Missense_Mutation p.H175N 0.52 deleterious(0) probably_damaging(1) TCGA-OR-A5J4-01 2 100210195 100210195 G C AFF3 Missense_Mutation p.S668C 0.20 deleterious(0.05) benign(0.012) TCGA-OR-A5J4-01 2 103006523 103006523 G T IL18R1 Missense_Mutation p.M319I 0.29 tolerated(0.23) benign(0.005) TCGA-OR-A5J4-01 2 110375491 110375491 G C SOWAHC 3'UTR 0.27 TCGA-OR-A5J4-01 2 112944994 112944994 G C FBLN7 Missense_Mutation p.D411H 0.34 deleterious(0) probably_damaging(0.97) TCGA-OR-A5J4-01 2 122205879 122205879 T A CLASP1 Missense_Mutation p.S572C 0.37 deleterious(0) possibly_damaging(0.765) TCGA-OR-A5J4-01 2 128051681 128051681 G C ERCC3 5'UTR 0.28 TCGA-OR-A5J4-01 2 128347750 128347750 C A MYO7B Missense_Mutation p.N646K 0.22 tolerated(0.68) benign(0.076) TCGA-OR-A5J4-01 2 130900797 130900797 G T CCDC74B Intron 0.28 TCGA-OR-A5J4-01 2 179621430 179621430 G T TTN Missense_Mutation p.S3591R 0.07 TCGA-OR-A5J4-01 2 209216103 209216103 C G PIKFYVE Missense_Mutation p.P1880R 0.36 deleterious(0) probably_damaging(0.968) TCGA-OR-A5J4-01 2 215275053 215275053 C A SPAG16 3'UTR 0.45 TCGA-OR-A5J4-01 2 216960742 216960742 G A TMEM169 Missense_Mutation p.G19D 0.44 tolerated_low_confidence(0.58) benign(0.283) TCGA-OR-A5J4-01 2 24086377 24086377 G C ATAD2B Silent p.A451A 0.49 TCGA-OR-A5J4-01 2 29445209 29445209 C T ALK Splice_Site p.X1172_splice 0.31 TCGA-OR-A5J4-01 2 86315734 86315734 C T POLR1A Missense_Mutation p.A229T 0.30 tolerated(0.56) benign(0.012) TCGA-OR-A5J4-01 2 89103957 89103957 G A ANKRD36BP2 RNA 0.38 TCGA-OR-A5J4-01 2 96697819 96697819 C G GPAT2 Missense_Mutation p.V47L 0.19 tolerated(0.06) unknown(0) TCGA-OR-A5J4-01 3 123419214 123419214 G T MYLK Missense_Mutation p.T1034N 0.21 deleterious(0.02) benign(0.093) TCGA-OR-A5J4-01 3 160148934 160148934 G C SMC4 Missense_Mutation p.E1019Q 0.24 tolerated(0.15) benign(0.159) TCGA-OR-A5J4-01 3 180687983 180687983 T A FXR1 Silent p.L480L 0.12 TCGA-OR-A5J4-01 3 193032830 193032830 A G ATP13A5 Silent p.L697L 0.31 TCGA-OR-A5J4-01 3 19554465 19554465 G T KCNH8 Nonsense_Mutation p.E695* 0.38 TCGA-OR-A5J4-01 3 38966970 38966970 G C SCN11A Missense_Mutation p.I216M 0.47 tolerated(0.15) benign(0.076) TCGA-OR-A5J4-01 3 47455323 47455323 C T SCAP 3'UTR 0.43 TCGA-OR-A5J4-01 3 47455329 47455329 A G SCAP 3'UTR 0.42 TCGA-OR-A5J4-01 3 87294944 87294944 G A CHMP2B Silent p.R69R 0.34 TCGA-OR-A5J4-01 4 152043252 152043252 C G SH3D19 Missense_Mutation p.Q788H 0.40 tolerated(0.07) benign(0.008) TCGA-OR-A5J4-01 4 517287 517289 CTT - PIGG In_Frame_Del p.L553del 0.27 TCGA-OR-A5J4-01 5 115141013 115141013 G C CDO1 3'UTR 0.25 TCGA-OR-A5J4-01 5 118844896 118844896 G A HSD17B4 Missense_Mutation p.G490D 0.09 deleterious(0) probably_damaging(0.967) TCGA-OR-A5J4-01 5 118965446 118965446 A T FAM170A 5'UTR 0.37 TCGA-OR-A5J4-01 5 135290597 135290597 G T LECT2 5'UTR 0.31 TCGA-OR-A5J4-01 5 140579540 140579540 C T PCDHB11 Missense_Mutation p.R65W 0.29 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-OR-A5J4-01 5 140746167 140746167 T G PCDHGA5 Missense_Mutation p.V757G 0.26 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-OR-A5J4-01 5 147258332 147258332 T G SCGB3A2 5'UTR 0.26 TCGA-OR-A5J4-01 5 176730339 176730339 G A RAB24 5'UTR 0.29 TCGA-OR-A5J4-01 5 34913589 34913589 G C RAD1 Nonsense_Mutation p.S98* 0.23 TCGA-OR-A5J4-01 5 38427121 38427121 G C EGFLAM Missense_Mutation p.L607F 0.45 deleterious(0) probably_damaging(0.938) TCGA-OR-A5J4-01 5 40843294 40843294 G - CARD6 Frame_Shift_Del p.A110Qfs*13 0.18 TCGA-OR-A5J4-01 5 60067796 60067796 T C ELOVL7 Silent p.E63E 0.27 TCGA-OR-A5J4-01 5 71492991 71492991 C - MAP1B Frame_Shift_Del p.L1272Wfs*6 0.25 TCGA-OR-A5J4-01 5 71495181 71495181 C A MAP1B Missense_Mutation p.T2000K 0.35 possibly_damaging(0.725) TCGA-OR-A5J4-01 5 78671991 78671991 C G HOMER1 Missense_Mutation p.E302D 0.24 deleterious(0) probably_damaging(0.985) TCGA-OR-A5J4-01 6 105219214 105219214 T G HACE1 Missense_Mutation p.K689Q 0.40 deleterious(0) possibly_damaging(0.758) TCGA-OR-A5J4-01 6 11185653 11185653 G T NEDD9 Silent p.V749V 0.36 TCGA-OR-A5J4-01 6 135726087 135726087 A C AHI1 Splice_Site p.X996_splice 0.29 TCGA-OR-A5J4-01 6 161527654 161527654 G A MAP3K4 Missense_Mutation p.C1322Y 0.04 deleterious(0) probably_damaging(0.973) TCGA-OR-A5J4-01 6 30303702 30303702 G C TRIM39 Missense_Mutation p.A244P 0.12 deleterious(0.01) possibly_damaging(0.616) TCGA-OR-A5J4-01 6 32096557 32096557 T A FKBPL Missense_Mutation p.K334M 0.19 deleterious(0) probably_damaging(0.91) TCGA-OR-A5J4-01 6 40399886 40399886 C G LRFN2 Missense_Mutation p.V323L 0.06 deleterious(0.04) possibly_damaging(0.457) TCGA-OR-A5J4-01 6 42985302 42985302 G A KLHDC3 Missense_Mutation p.R67H 0.05 tolerated(0.12) benign(0.005) TCGA-OR-A5J4-01 6 49754247 49754247 T C PGK2 Silent p.A218A 0.20 TCGA-OR-A5J4-01 6 56434803 56434805 CTT - DST In_Frame_Del p.E1953del 0.28 TCGA-OR-A5J4-01 6 76022190 76022190 G C FILIP1 Missense_Mutation p.P1120A 0.19 tolerated(0.41) benign(0.007) TCGA-OR-A5J4-01 6 90660029 90660029 G A BACH2 Missense_Mutation p.A599V 0.16 deleterious(0.04) benign(0.035) TCGA-OR-A5J4-01 6 90660030 90660030 C T BACH2 Missense_Mutation p.A599T 0.16 deleterious(0.01) benign(0.37) TCGA-OR-A5J4-01 7 139737565 139737565 G A PARP12 Missense_Mutation p.A425V 0.72 tolerated(0.06) possibly_damaging(0.521) TCGA-OR-A5J4-01 7 150698393 150698393 G T NOS3 Missense_Mutation p.K436N 0.65 deleterious(0) benign(0.065) TCGA-OR-A5J4-01 7 43548552 43548552 T A HECW1 Intron 0.39 TCGA-OR-A5J4-01 7 44714133 44714133 C T OGDH Silent p.Y304Y 0.37 TCGA-OR-A5J4-01 7 91793258 91793258 A C LRRD1 Nonsense_Mutation p.L420* 0.51 TCGA-OR-A5J4-01 7 95157438 95157438 C G ASB4 Silent p.L267L 0.04 TCGA-OR-A5J4-01 8 142506432 142506432 C T MROH5 Missense_Mutation p.A49T 0.28 deleterious(0.04) benign(0.304) TCGA-OR-A5J4-01 8 42294695 42294695 G C SLC20A2 Missense_Mutation p.I445M 0.13 tolerated(0.05) probably_damaging(0.979) TCGA-OR-A5J4-01 8 59059903 59059903 G C FAM110B 3'UTR 0.25 TCGA-OR-A5J4-01 8 81553604 81553604 G A ZNF704 Silent p.D412D 0.23 TCGA-OR-A5J4-01 8 82670423 82670423 A G CHMP4C Missense_Mutation p.N177S 0.21 deleterious(0.04) benign(0.065) TCGA-OR-A5J4-01 9 125562456 125562458 ACA - OR1K1 In_Frame_Del p.T20del 0.23 TCGA-OR-A5J4-01 9 13192144 13192144 C A MPDZ Nonsense_Mutation p.E652* 0.19 TCGA-OR-A5J4-01 9 133556750 133556750 G A PRDM12 Silent p.T266T 0.25 TCGA-OR-A5J4-01 9 136337148 136337148 G A SLC2A6 Missense_Mutation p.R507C 0.04 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-OR-A5J4-01 9 138453660 138453660 C T PAEP Silent p.L5L 0.22 TCGA-OR-A5J4-01 9 17795615 17795615 T C SH3GL2 Silent p.F311F 0.04 TCGA-OR-A5J4-01 9 21409580 21409580 G A IFNA8 Missense_Mutation p.M135I 0.22 tolerated(0.22) benign(0.007) TCGA-OR-A5J4-01 9 35092629 35092629 C T PIGO Missense_Mutation p.A419T 0.26 tolerated(0.46) benign(0.003) TCGA-OR-A5J4-01 9 78910311 78910311 G A PCSK5 Silent p.E1102E 0.29 TCGA-OR-A5J4-01 X 101823388 101823388 C A NXF4 RNA 0.31 TCGA-OR-A5J4-01 X 107447550 107447550 C A COL4A6 Missense_Mutation p.K261N 0.47 unknown(0) TCGA-OR-A5J4-01 X 128722897 128722897 C A OCRL Silent p.L792L 0.13 TCGA-OR-A5J4-01 X 128782651 128782651 G T APLN Missense_Mutation p.F62L 0.46 tolerated_low_confidence(0.09) probably_damaging(0.953) TCGA-OR-A5J4-01 X 131261892 131261892 C A FRMD7 5'UTR 0.35 TCGA-OR-A5J4-01 X 133547878 133547878 G T PHF6 Missense_Mutation p.S204I 0.02 deleterious(0.01) possibly_damaging(0.665) TCGA-OR-A5J4-01 X 19425347 19425347 A T MAP3K15 Missense_Mutation p.D601E 0.08 tolerated(0.18) possibly_damaging(0.795) TCGA-OR-A5J4-01 X 22117127 22117127 G C PHEX Missense_Mutation p.D313H 0.26 deleterious(0) probably_damaging(0.993) TCGA-OR-A5J4-01 X 24006591 24006591 C A KLHL15 Missense_Mutation p.G421V 0.26 deleterious(0) probably_damaging(0.914) TCGA-OR-A5J4-01 X 37026574 37026574 G A FAM47C Missense_Mutation p.A31T 0.06 tolerated(0.23) benign(0.142) TCGA-OR-A5J4-01 X 37028029 37028029 G C FAM47C Missense_Mutation p.E516Q 0.36 deleterious_low_confidence(0.04) probably_damaging(0.969) TCGA-OR-A5J4-01 X 41586498 41586498 C G GPR82 Missense_Mutation p.I73M 0.31 tolerated(0.07) benign(0.009) TCGA-OR-A5J4-01 X 53284064 53284064 G C IQSEC2 Missense_Mutation p.A350G 0.27 deleterious(0) probably_damaging(0.934) TCGA-OR-A5J4-01 X 53616611 53616611 C T HUWE1 Missense_Mutation p.E1453K 0.23 benign(0.059) TCGA-OR-A5J5-01 10 102789754 102789754 C T PDZD7 Missense_Mutation p.E75K 0.15 deleterious(0.03) benign(0.422) TCGA-OR-A5J5-01 10 104359294 104359294 C T SUFU Missense_Mutation p.R339W 0.29 deleterious(0.04) benign(0.008) TCGA-OR-A5J5-01 10 105182858 105182858 G A PDCD11 Missense_Mutation p.D871N 0.64 tolerated(0.08) benign(0.002) TCGA-OR-A5J5-01 10 105185215 105185215 A G PDCD11 Missense_Mutation p.T1080A 0.08 tolerated(0.64) benign(0.002) TCGA-OR-A5J5-01 10 105215444 105215444 G A CALHM1 Missense_Mutation p.R206W 0.11 deleterious(0) probably_damaging(0.917) TCGA-OR-A5J5-01 10 106937797 106937797 T - SORCS3 Intron 0.43 TCGA-OR-A5J5-01 10 120791285 120791285 G A NANOS1 3'UTR 0.32 TCGA-OR-A5J5-01 10 121586489 121586489 A G INPP5F Missense_Mutation p.N866D 0.60 tolerated(0.3) benign(0.002) TCGA-OR-A5J5-01 10 127755329 127755329 G A ADAM12 Missense_Mutation p.P460L 0.33 tolerated(0.29) benign(0.212) TCGA-OR-A5J5-01 10 134219725 134219725 C T PWWP2B Missense_Mutation p.A574V 0.64 tolerated(0.42) benign(0.01) TCGA-OR-A5J5-01 10 16994285 16994285 C T CUBN Silent p.A1653A 0.33 TCGA-OR-A5J5-01 10 30653951 30653951 G A AL161651.1 3'Flank 0.33 TCGA-OR-A5J5-01 10 34663856 34663856 T A PARD3 Silent p.G538G 0.04 TCGA-OR-A5J5-01 10 43285924 43285924 C T BMS1 Nonsense_Mutation p.R201* 0.09 TCGA-OR-A5J5-01 10 43622076 43622076 C T RET Silent p.D1031D 0.30 TCGA-OR-A5J5-01 10 50574313 50574313 G A DRGX Missense_Mutation p.R219C 0.63 deleterious(0) possibly_damaging(0.867) TCGA-OR-A5J5-01 10 5139659 5139659 C T AKR1C3 Nonsense_Mutation p.R96* 0.05 TCGA-OR-A5J5-01 10 55587306 55587306 C T PCDH15 Missense_Mutation p.R1405H 0.28 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 10 5567320 5567320 G A CALML3 Missense_Mutation p.R91H 0.68 tolerated_low_confidence(0.07) benign(0.128) TCGA-OR-A5J5-01 10 61012730 61012730 C T FAM13C Missense_Mutation p.R454H 0.28 tolerated(0.13) benign(0.001) TCGA-OR-A5J5-01 10 70066655 70066655 C T PBLD 5'UTR 0.26 TCGA-OR-A5J5-01 10 70980068 70980068 G A HKDC1 5'UTR 0.15 TCGA-OR-A5J5-01 10 71267420 71267420 T G TSPAN15 3'UTR 0.67 TCGA-OR-A5J5-01 10 71871407 71871407 G A H2AFY2 Missense_Mutation p.V363M 0.04 deleterious(0.01) possibly_damaging(0.672) TCGA-OR-A5J5-01 10 75290071 75290071 C T USP54 Missense_Mutation p.R553H 0.35 tolerated(0.22) benign(0.002) TCGA-OR-A5J5-01 10 75552240 75552240 C A ZSWIM8 Missense_Mutation p.P648H 0.35 deleterious_low_confidence(0.03) benign(0) TCGA-OR-A5J5-01 10 7768994 7768994 C T ITIH2 Nonsense_Mutation p.R356* 0.60 TCGA-OR-A5J5-01 10 85909926 85909926 G A GHITM Silent p.A236A 0.21 TCGA-OR-A5J5-01 10 89469057 89469057 C T PAPSS2 Silent p.T44T 0.38 TCGA-OR-A5J5-01 10 98708916 98708916 G A LCOR Silent p.P34P 0.63 TCGA-OR-A5J5-01 10 99129265 99129265 C T RRP12 Missense_Mutation p.V958M 0.38 deleterious(0) probably_damaging(0.945) TCGA-OR-A5J5-01 10 99145706 99145706 G A RRP12 Silent p.H354H 0.61 TCGA-OR-A5J5-01 11 107535998 107535998 C A ELMOD1 3'UTR 0.87 TCGA-OR-A5J5-01 11 111229514 111229514 G A POU2AF1 Missense_Mutation p.A49V 0.47 tolerated(0.09) possibly_damaging(0.558) TCGA-OR-A5J5-01 11 111789615 111789615 C T C11orf52 5'UTR 0.88 TCGA-OR-A5J5-01 11 113860305 113860305 G T HTR3A Silent p.L457L 0.09 TCGA-OR-A5J5-01 11 114453402 114453402 C T NXPE4 Silent p.A146A 0.51 TCGA-OR-A5J5-01 11 117984057 117984057 G A TMPRSS4 Missense_Mutation p.V273M 0.06 deleterious(0) probably_damaging(0.996) TCGA-OR-A5J5-01 11 118495742 118495742 C T PHLDB1 Nonsense_Mutation p.R150* 0.41 TCGA-OR-A5J5-01 11 118635947 118635947 G A DDX6 Nonsense_Mutation p.R206* 0.39 TCGA-OR-A5J5-01 11 118764716 118764716 G A CXCR5 Missense_Mutation p.V155I 0.49 tolerated(0.28) benign(0.285) TCGA-OR-A5J5-01 11 120175859 120175859 G A POU2F3 Missense_Mutation p.E191K 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-OR-A5J5-01 11 12234878 12234878 G A MICAL2 Silent p.A256A 0.98 TCGA-OR-A5J5-01 11 123483504 123483504 G - GRAMD1B Frame_Shift_Del p.L511* 0.09 TCGA-OR-A5J5-01 11 123993793 123993793 T C VWA5A Missense_Mutation p.M296T 0.94 tolerated(0.19) benign(0.05) TCGA-OR-A5J5-01 11 124189576 124189576 G A OR8D2 Missense_Mutation p.T173M 0.84 deleterious(0.03) benign(0.01) TCGA-OR-A5J5-01 11 15262049 15262049 G A INSC Missense_Mutation p.A531T 0.44 deleterious(0.01) benign(0.072) TCGA-OR-A5J5-01 11 18339355 18339355 C T HPS5 Silent p.E17E 0.05 TCGA-OR-A5J5-01 11 18422479 18422479 G A LDHA Missense_Mutation p.V143M 0.57 deleterious(0.03) probably_damaging(0.945) TCGA-OR-A5J5-01 11 20075678 20075678 C T NAV2 Missense_Mutation p.R1535W 0.88 deleterious(0) probably_damaging(0.998) TCGA-OR-A5J5-01 11 314086 314086 C T IFITM1 5'UTR 0.89 TCGA-OR-A5J5-01 11 45832787 45832787 C T SLC35C1 Silent p.G332G 0.96 TCGA-OR-A5J5-01 11 45892023 45892023 C T CRY2 Missense_Mutation p.R518W 0.15 deleterious(0) probably_damaging(0.967) TCGA-OR-A5J5-01 11 46703669 46703669 G A ARHGAP1 Silent p.H127H 0.03 TCGA-OR-A5J5-01 11 46914637 46914637 G A LRP4 Silent p.T528T 0.48 TCGA-OR-A5J5-01 11 48161171 48161171 G A PTPRJ Silent p.A762A 0.04 TCGA-OR-A5J5-01 11 4843086 4843086 G T OR51F2 Missense_Mutation p.K157N 0.50 deleterious(0.03) benign(0.124) TCGA-OR-A5J5-01 11 562158 562158 C T RASSF7 Silent p.G68G 0.07 TCGA-OR-A5J5-01 11 57466653 57466653 G A ZDHHC5 Missense_Mutation p.R582H 0.92 tolerated(0.19) probably_damaging(0.987) TCGA-OR-A5J5-01 11 62298815 62298815 G A AHNAK Missense_Mutation p.A1025V 0.14 benign(0.126) TCGA-OR-A5J5-01 11 62446415 62446415 C T UBXN1 5'UTR 0.97 TCGA-OR-A5J5-01 11 62561845 62561845 C T NXF1 Missense_Mutation p.A549T 0.48 tolerated(0.34) benign(0.003) TCGA-OR-A5J5-01 11 63594410 63594410 G A C11orf84 Silent p.P315P 0.46 TCGA-OR-A5J5-01 11 64368361 64368361 G A SLC22A12 Missense_Mutation p.E517K 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5J5-01 11 65034978 65034978 C T POLA2 Missense_Mutation p.H79Y 0.84 deleterious(0.05) benign(0.233) TCGA-OR-A5J5-01 11 66243098 66243098 C T PELI3 Silent p.D290D 0.07 TCGA-OR-A5J5-01 11 71718457 71718457 G A NUMA1 Silent p.D1747D 0.96 TCGA-OR-A5J5-01 11 75115215 75115215 G A RPS3 Missense_Mutation p.V184I 0.88 tolerated(0.77) benign(0.028) TCGA-OR-A5J5-01 11 77614597 77614597 C T INTS4 Missense_Mutation p.A696T 0.37 tolerated(0.3) possibly_damaging(0.904) TCGA-OR-A5J5-01 11 77885166 77885166 G A KCTD21 Silent p.N145N 0.84 TCGA-OR-A5J5-01 11 92881964 92881964 G A SLC36A4 Silent p.F418F 0.94 TCGA-OR-A5J5-01 11 93826774 93826774 G A HEPHL1 Missense_Mutation p.R801Q 0.05 deleterious(0.02) benign(0.055) TCGA-OR-A5J5-01 12 100732792 100732792 G T SCYL2 Missense_Mutation p.G878C 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.606) TCGA-OR-A5J5-01 12 109613959 109613959 C T ACACB Missense_Mutation p.A443V 0.15 tolerated(0.17) benign(0.012) TCGA-OR-A5J5-01 12 113442751 113442751 G A OAS2 Missense_Mutation p.A398T 0.50 deleterious(0.05) benign(0.358) TCGA-OR-A5J5-01 12 113442852 113442852 C T OAS2 Silent p.I431I 0.04 TCGA-OR-A5J5-01 12 117013775 117013775 C T MAP1LC3B2 Missense_Mutation p.R10W 0.21 deleterious(0) benign(0.398) TCGA-OR-A5J5-01 12 117160928 117160928 G A C12orf49 Missense_Mutation p.P71L 0.23 tolerated(0.46) benign(0.007) TCGA-OR-A5J5-01 12 122219074 122219074 C T RHOF Missense_Mutation p.R84Q 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 12 122252825 122252825 C T SETD1B Missense_Mutation p.R902W 0.10 unknown(0) TCGA-OR-A5J5-01 12 123339931 123339932 - C HIP1R Frame_Shift_Ins p.A327Rfs*9 0.24 TCGA-OR-A5J5-01 12 123950559 123950559 C T SNRNP35 Missense_Mutation p.R163W 0.11 deleterious(0) probably_damaging(0.998) TCGA-OR-A5J5-01 12 130184571 130184571 C A TMEM132D Missense_Mutation p.R251L 0.44 deleterious(0.04) benign(0.083) TCGA-OR-A5J5-01 12 133249853 133249853 G A POLE Missense_Mutation p.T457M 0.24 deleterious(0) possibly_damaging(0.899) TCGA-OR-A5J5-01 12 1742040 1742040 C T WNT5B Silent p.N99N 0.22 TCGA-OR-A5J5-01 12 1895367 1895367 G A ADIPOR2 3'UTR 0.17 TCGA-OR-A5J5-01 12 1988971 1988971 G A CACNA2D4 Missense_Mutation p.T521M 0.06 deleterious(0) probably_damaging(0.99) TCGA-OR-A5J5-01 12 2019113 2019113 C T CACNA2D4 Missense_Mutation p.E149K 0.50 deleterious(0.01) probably_damaging(0.993) TCGA-OR-A5J5-01 12 40422282 40422282 G A SLC2A13 Missense_Mutation p.A249V 0.65 deleterious(0) probably_damaging(0.917) TCGA-OR-A5J5-01 12 48249477 48249477 C T VDR Missense_Mutation p.A281T 0.50 tolerated(0.07) possibly_damaging(0.868) TCGA-OR-A5J5-01 12 48921823 48921823 G A OR8S1 Silent p.T339T 0.48 TCGA-OR-A5J5-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.34 TCGA-OR-A5J5-01 12 54757424 54757424 G A GPR84 Missense_Mutation p.T71M 0.48 deleterious(0) probably_damaging(0.924) TCGA-OR-A5J5-01 12 56504465 56504465 G A PA2G4 Silent p.P277P 0.49 TCGA-OR-A5J5-01 12 5724430 5724430 C T ANO2 Missense_Mutation p.R617H 0.18 deleterious(0.03) probably_damaging(0.927) TCGA-OR-A5J5-01 12 57432600 57432600 G A MYO1A Missense_Mutation p.A509V 0.23 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 12 58018385 58018385 C T SLC26A10 Intron 0.23 TCGA-OR-A5J5-01 12 64790690 64790690 T C RPS11P6 RNA 0.28 TCGA-OR-A5J5-01 12 6934685 6934685 C - GPR162 Frame_Shift_Del p.W304Gfs*82 0.23 TCGA-OR-A5J5-01 12 7187965 7187965 C T C1R Silent p.P611P 0.24 TCGA-OR-A5J5-01 12 75444415 75444415 C T KCNC2 Missense_Mutation p.C457Y 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 12 8290774 8290774 G A CLEC4A Missense_Mutation p.R202H 0.06 tolerated(0.42) benign(0.031) TCGA-OR-A5J5-01 12 83290288 83290288 G A TMTC2 Missense_Mutation p.R449Q 0.43 tolerated(0.07) benign(0.222) TCGA-OR-A5J5-01 12 85554403 85554403 G A LRRIQ1 Missense_Mutation p.R1578H 0.38 deleterious(0.01) probably_damaging(0.912) TCGA-OR-A5J5-01 13 111371922 111371922 C T ING1 Silent p.N304N 0.90 TCGA-OR-A5J5-01 13 113741680 113741680 C T MCF2L Silent p.H835H 0.18 TCGA-OR-A5J5-01 13 114204089 114204089 C T TMCO3 3'UTR 0.33 TCGA-OR-A5J5-01 13 114292172 114292172 C T TFDP1 Missense_Mutation p.T349M 0.13 tolerated(0.16) benign(0.411) TCGA-OR-A5J5-01 13 24825999 24825999 C T SPATA13 Silent p.N721N 0.83 TCGA-OR-A5J5-01 13 45147753 45147753 C T TSC22D1 Missense_Mutation p.A820T 0.09 tolerated(0.13) benign(0.004) TCGA-OR-A5J5-01 13 95840746 95840746 G A ABCC4 Silent p.G438G 0.88 TCGA-OR-A5J5-01 14 102793112 102793112 C T ZNF839 Missense_Mutation p.T360M 0.48 tolerated(0.15) benign(0.031) TCGA-OR-A5J5-01 14 104205313 104205313 G A PPP1R13B Silent p.H880H 0.52 TCGA-OR-A5J5-01 14 106066411 106066411 C T IGHE Missense_Mutation p.G427S 0.22 deleterious(0.05) benign(0.254) TCGA-OR-A5J5-01 14 21542636 21542636 G A ARHGEF40 Silent p.T249T 0.08 TCGA-OR-A5J5-01 14 23828979 23828979 G A EFS Silent p.P236P 0.15 TCGA-OR-A5J5-01 14 33014537 33014537 A G AKAP6 Silent p.E226E 0.45 TCGA-OR-A5J5-01 14 35231352 35231352 C T BAZ1A Missense_Mutation p.R1285H 0.22 tolerated_low_confidence(0.1) benign(0.097) TCGA-OR-A5J5-01 14 50090029 50090029 T - MGAT2 3'UTR 0.42 TCGA-OR-A5J5-01 14 51237214 51237215 CT - NIN Frame_Shift_Del p.E442Afs*14 0.47 TCGA-OR-A5J5-01 14 64644168 64644168 C T SYNE2 Silent p.H5841H 0.47 TCGA-OR-A5J5-01 14 69371417 69371417 C T ACTN1 Missense_Mutation p.V211M 0.11 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 14 69792727 69792727 G A GALNT16 Missense_Mutation p.R184H 0.06 deleterious(0) benign(0.047) TCGA-OR-A5J5-01 14 71575457 71575457 G A PCNX Silent p.V2146V 0.21 TCGA-OR-A5J5-01 14 77845328 77845328 C T SAMD15 Missense_Mutation p.R523W 0.22 tolerated(0.07) benign(0.009) TCGA-OR-A5J5-01 14 89069362 89069362 C T ZC3H14 Silent p.L569L 0.42 TCGA-OR-A5J5-01 14 90730133 90730137 TTTCA - PSMC1 Frame_Shift_Del p.S137Cfs*28 0.23 TCGA-OR-A5J5-01 14 94741742 94741742 C T PPP4R4 Silent p.S827S 0.15 TCGA-OR-A5J5-01 14 95884311 95884311 G A SYNE3 Missense_Mutation p.A927V 0.45 deleterious(0.04) possibly_damaging(0.573) TCGA-OR-A5J5-01 15 42456654 42456654 T C VPS39 Missense_Mutation p.E643G 0.07 tolerated(0.28) benign(0) TCGA-OR-A5J5-01 15 44093844 44093844 G A HYPK Intron 0.52 TCGA-OR-A5J5-01 15 63433897 63433897 C - LACTB Frame_Shift_Del p.P514Qfs*22 0.29 TCGA-OR-A5J5-01 15 78466041 78466041 G A ACSBG1 Silent p.I661I 0.46 TCGA-OR-A5J5-01 15 83328678 83328678 C T AP3B2 Missense_Mutation p.R1006Q 0.30 tolerated(0.76) benign(0.238) TCGA-OR-A5J5-01 15 91184391 91184391 G A CRTC3 Silent p.P537P 0.41 TCGA-OR-A5J5-01 16 1393394 1393394 G A BAIAP3 Silent p.L457L 0.52 TCGA-OR-A5J5-01 16 15155600 15155600 G A RRN3 3'UTR 0.21 TCGA-OR-A5J5-01 16 19194969 19194969 G A SYT17 Missense_Mutation p.D151N 0.49 deleterious(0.01) benign(0.238) TCGA-OR-A5J5-01 16 25151548 25151548 G A LCMT1 Silent p.T128T 0.44 TCGA-OR-A5J5-01 16 2763556 2763556 C T PRSS27 Missense_Mutation p.E218K 0.38 tolerated(0.89) benign(0.013) TCGA-OR-A5J5-01 16 27782957 27782957 G A KIAA0556 Silent p.P1394P 0.20 TCGA-OR-A5J5-01 16 29994575 29994575 T C TAOK2 Silent p.P394P 0.07 TCGA-OR-A5J5-01 16 31144689 31144689 G - PRSS8 Frame_Shift_Del p.Q42Kfs*64 0.35 TCGA-OR-A5J5-01 16 4558130 4558130 C T HMOX2 Silent p.N207N 0.41 TCGA-OR-A5J5-01 16 48155704 48155704 G A ABCC12 Silent p.Y545Y 0.52 TCGA-OR-A5J5-01 16 67765468 67765468 C T RANBP10 Missense_Mutation p.V266M 0.10 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 16 70190402 70190402 G A PDPR Missense_Mutation p.A754T 0.13 deleterious(0) probably_damaging(0.919) TCGA-OR-A5J5-01 16 71571984 71571988 TTCTT - CHST4 3'UTR 0.45 TCGA-OR-A5J5-01 16 71886657 71886657 C T ATXN1L 3'UTR 0.30 TCGA-OR-A5J5-01 16 72057466 72057466 C T DHODH Missense_Mutation p.T356M 0.39 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 16 75575345 75575345 C T TMEM231 Missense_Mutation p.V254I 0.40 tolerated(0.8) benign(0.01) TCGA-OR-A5J5-01 16 77233290 77233290 G A MON1B 3'UTR 0.52 TCGA-OR-A5J5-01 16 84129260 84129260 C T MBTPS1 Missense_Mutation p.R191H 0.17 tolerated(0.09) possibly_damaging(0.836) TCGA-OR-A5J5-01 16 85839499 85839499 G A COX4I1 Intron 0.14 TCGA-OR-A5J5-01 16 88496389 88496389 C T ZNF469 Silent p.D837D 0.05 TCGA-OR-A5J5-01 16 88706308 88706308 G A IL17C Missense_Mutation p.R141H 0.54 deleterious(0.02) probably_damaging(0.976) TCGA-OR-A5J5-01 16 89345709 89345709 G A ANKRD11 Missense_Mutation p.T2414M 0.49 probably_damaging(0.974) TCGA-OR-A5J5-01 16 89352532 89352532 C T ANKRD11 Silent p.T269T 0.26 TCGA-OR-A5J5-01 17 10614312 10614312 G A ADPRM Missense_Mutation p.V294I 0.14 tolerated(0.52) benign(0.007) TCGA-OR-A5J5-01 17 11778483 11778483 C T DNAH9 Missense_Mutation p.T3487M 0.06 benign(0.108) TCGA-OR-A5J5-01 17 1371412 1371412 C T MYO1C Silent p.A922A 0.47 TCGA-OR-A5J5-01 17 169309 169309 G A RPH3AL Missense_Mutation p.R85W 0.87 deleterious(0) possibly_damaging(0.846) TCGA-OR-A5J5-01 17 20224697 20224697 C T AC004702.2 Intron 0.11 TCGA-OR-A5J5-01 17 27188561 27188561 G A ERAL1 3'Flank 0.34 TCGA-OR-A5J5-01 17 35298051 35298051 G A LHX1 Missense_Mutation p.R181Q 0.91 deleterious(0) probably_damaging(0.979) TCGA-OR-A5J5-01 17 37934013 37934013 C A IKZF3 Silent p.A239A 0.42 TCGA-OR-A5J5-01 17 38345578 38345578 C T RAPGEFL1 Silent p.P149P 0.67 TCGA-OR-A5J5-01 17 38786977 38786977 G A SMARCE1 Missense_Mutation p.P339L 0.89 tolerated(0.13) probably_damaging(0.913) TCGA-OR-A5J5-01 17 39521212 39521212 G A KRT33B Missense_Mutation p.R306C 0.98 deleterious(0.04) benign(0.262) TCGA-OR-A5J5-01 17 39623234 39623234 C T KRT32 Missense_Mutation p.R115Q 0.46 deleterious(0.05) probably_damaging(0.998) TCGA-OR-A5J5-01 17 39775873 39775873 G A KRT17 Silent p.R424R 0.03 TCGA-OR-A5J5-01 17 39981770 39981770 C T NT5C3B 3'Flank 0.89 TCGA-OR-A5J5-01 17 40838076 40838076 C T CNTNAP1 Missense_Mutation p.R273C 0.47 deleterious(0) possibly_damaging(0.906) TCGA-OR-A5J5-01 17 40948205 40948205 C T WNK4 Missense_Mutation p.R1166W 0.91 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J5-01 17 41004636 41004636 C T AOC3 Missense_Mutation p.R426C 0.05 deleterious(0) possibly_damaging(0.534) TCGA-OR-A5J5-01 17 42170066 42170066 G A HDAC5 Silent p.D251D 0.85 TCGA-OR-A5J5-01 17 46878650 46878650 C T TTLL6 Missense_Mutation p.R193H 0.38 tolerated(1) benign(0) TCGA-OR-A5J5-01 17 4688850 4688850 G A VMO1 Missense_Mutation p.A139V 0.45 tolerated(0.24) benign(0.091) TCGA-OR-A5J5-01 17 47395005 47395005 C T ZNF652 Missense_Mutation p.R28H 0.55 tolerated(0.16) benign(0) TCGA-OR-A5J5-01 17 4999059 4999059 C T ZFP3 3'UTR 0.44 TCGA-OR-A5J5-01 17 57430826 57430826 G A YPEL2 Missense_Mutation p.R19Q 0.91 deleterious(0.04) benign(0.244) TCGA-OR-A5J5-01 17 61780974 61780974 G A STRADA Silent p.D427D 0.27 TCGA-OR-A5J5-01 17 71244699 71244699 C T C17orf80 3'UTR 0.47 TCGA-OR-A5J5-01 17 72843589 72843589 G A GRIN2C Missense_Mutation p.P620L 0.40 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 17 74077421 74077421 G A ZACN Missense_Mutation p.V203I 0.07 tolerated(0.44) possibly_damaging(0.686) TCGA-OR-A5J5-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.93 deleterious(0) probably_damaging(0.998) TCGA-OR-A5J5-01 17 76045635 76045635 G A TNRC6C Silent p.T164T 0.88 TCGA-OR-A5J5-01 17 76118720 76118720 C T TMC6 Missense_Mutation p.R398H 0.33 deleterious(0) probably_damaging(0.95) TCGA-OR-A5J5-01 17 76695039 76695039 C T CYTH1 Missense_Mutation p.V188I 0.47 tolerated(0.31) benign(0.074) TCGA-OR-A5J5-01 17 7814933 7814933 C - CHD3 3'UTR 0.26 TCGA-OR-A5J5-01 17 79031712 79031712 C T BAIAP2 Silent p.D54D 0.89 TCGA-OR-A5J5-01 17 79426117 79426117 C T RP11-1055B8.7 Silent p.D1881D 0.95 TCGA-OR-A5J5-01 17 80019852 80019852 G A DUS1L Missense_Mutation p.T173M 0.94 deleterious(0) probably_damaging(0.95) TCGA-OR-A5J5-01 17 8424545 8424545 G A MYH10 Silent p.S672S 0.48 TCGA-OR-A5J5-01 18 11853256 11853260 AAGTA - CHMP1B 3'UTR 0.95 TCGA-OR-A5J5-01 18 2891551 2891551 C T EMILIN2 Missense_Mutation p.R476W 0.41 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 18 29104699 29104699 G A DSG2 Missense_Mutation p.V288I 0.80 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5J5-01 18 29340269 29340269 G A SLC25A52 Missense_Mutation p.A129V 0.04 tolerated(0.68) benign(0.001) TCGA-OR-A5J5-01 18 43529494 43529494 G A EPG5 Nonsense_Mutation p.R485* 0.38 TCGA-OR-A5J5-01 18 47796100 47796100 G T MBD1 Missense_Mutation p.P623T 0.37 deleterious_low_confidence(0.02) benign(0.004) TCGA-OR-A5J5-01 18 47801792 47801792 C T MBD1 Intron 0.90 TCGA-OR-A5J5-01 19 10402162 10402162 C T ICAM5 Intron 0.18 TCGA-OR-A5J5-01 19 10476463 10476463 C T TYK2 Silent p.P247P 0.57 TCGA-OR-A5J5-01 19 1277286 1277286 G A C19orf24 Missense_Mutation p.R129Q 0.40 deleterious(0.03) possibly_damaging(0.897) TCGA-OR-A5J5-01 19 12805414 12805414 G A FBXW9 Silent p.T224T 0.49 TCGA-OR-A5J5-01 19 12816346 12816346 C T TNPO2 Missense_Mutation p.R608H 0.02 deleterious(0.04) benign(0.133) TCGA-OR-A5J5-01 19 13356010 13356010 C T CACNA1A Missense_Mutation p.V1646M 0.48 probably_damaging(0.938) TCGA-OR-A5J5-01 19 13370425 13370425 C A CACNA1A Missense_Mutation p.W1447C 0.51 probably_damaging(0.95) TCGA-OR-A5J5-01 19 1496349 1496349 C T REEP6 Silent p.R138R 0.18 TCGA-OR-A5J5-01 19 15276714 15276714 G A NOTCH3 Missense_Mutation p.R1851C 0.14 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 19 15562544 15562544 C - RASAL3 3'UTR 0.28 TCGA-OR-A5J5-01 19 16611814 16611814 G A C19orf44 Missense_Mutation p.G71R 0.54 tolerated(0.11) possibly_damaging(0.576) TCGA-OR-A5J5-01 19 16986968 16986968 G A SIN3B Missense_Mutation p.V931I 0.53 tolerated(0.2) benign(0.155) TCGA-OR-A5J5-01 19 17283599 17283599 G A MYO9B Missense_Mutation p.R656Q 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 19 17441307 17441307 G A ANO8 Nonsense_Mutation p.R334* 0.04 TCGA-OR-A5J5-01 19 17679361 17679361 G A COLGALT1 Missense_Mutation p.R223Q 0.21 tolerated(0.18) benign(0.062) TCGA-OR-A5J5-01 19 18279340 18279340 A G PIK3R2 Missense_Mutation p.K598E 0.46 tolerated(0.1) benign(0.002) TCGA-OR-A5J5-01 19 18650417 18650417 G A FKBP8 Missense_Mutation p.R136W 0.46 tolerated(0.19) benign(0.006) TCGA-OR-A5J5-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.15 TCGA-OR-A5J5-01 19 19360612 19360612 C A NCAN Missense_Mutation p.H1286Q 0.27 deleterious(0.03) probably_damaging(0.991) TCGA-OR-A5J5-01 19 20591765 20591765 T A ZNF826P Intron 0.88 TCGA-OR-A5J5-01 19 21720662 21720662 A C ZNF429 Missense_Mutation p.N603H 0.26 tolerated(0.18) possibly_damaging(0.592) TCGA-OR-A5J5-01 19 33616095 33616095 G A GPATCH1 Missense_Mutation p.R869Q 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-OR-A5J5-01 19 36034031 36034031 C T GAPDHS Intron 0.54 TCGA-OR-A5J5-01 19 36217156 36217156 G A KMT2B Missense_Mutation p.R1302H 0.04 probably_damaging(0.991) TCGA-OR-A5J5-01 19 36222925 36222925 G A KMT2B Missense_Mutation p.A1852T 0.25 benign(0.004) TCGA-OR-A5J5-01 19 38160733 38160733 C T ZNF781 Missense_Mutation p.R106Q 0.49 tolerated(0.53) benign(0.083) TCGA-OR-A5J5-01 19 38591715 38591715 C T SIPA1L3 Silent p.G626G 0.19 TCGA-OR-A5J5-01 19 38993359 38993359 G A RYR1 Silent p.S2609S 0.44 TCGA-OR-A5J5-01 19 40412003 40412003 C T FCGBP Missense_Mutation p.G1209R 0.12 probably_damaging(0.98) TCGA-OR-A5J5-01 19 41931793 41931793 G A B3GNT8 Silent p.F297F 0.34 TCGA-OR-A5J5-01 19 42311282 42311282 G A CEACAM3 Intron 0.43 TCGA-OR-A5J5-01 19 45162208 45162208 C T PVR Intron 0.43 TCGA-OR-A5J5-01 19 45578983 45578983 C T ZNF296 Missense_Mutation p.G146S 0.04 tolerated(0.41) benign(0) TCGA-OR-A5J5-01 19 45852157 45852157 G A KLC3 Missense_Mutation p.R316H 0.25 deleterious(0) probably_damaging(0.991) TCGA-OR-A5J5-01 19 46129994 46129994 C - EML2 Frame_Shift_Del p.G438Afs*3 0.30 TCGA-OR-A5J5-01 19 47259950 47259950 G A FKRP Missense_Mutation p.V415M 0.45 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J5-01 19 47571027 47571027 G A ZC3H4 Missense_Mutation p.P833L 0.51 unknown(0) TCGA-OR-A5J5-01 19 47856391 47856391 C T DHX34 Missense_Mutation p.T35M 0.03 tolerated(0.12) benign(0.158) TCGA-OR-A5J5-01 19 48204610 48204610 G A GLTSCR1 Silent p.S1207S 0.38 TCGA-OR-A5J5-01 19 49999669 49999669 A T RPS11 5'UTR 0.45 TCGA-OR-A5J5-01 19 50548675 50548675 C T ZNF473 Silent p.C325C 0.48 TCGA-OR-A5J5-01 19 5206812 5206812 G A PTPRS Silent p.L1940L 0.22 TCGA-OR-A5J5-01 19 52216667 52216667 C T HAS1 3'UTR 0.48 TCGA-OR-A5J5-01 19 52328959 52328959 C A FPR3 3'UTR 0.18 TCGA-OR-A5J5-01 19 52658977 52658977 T C ZNF836 Silent p.L653L 0.10 TCGA-OR-A5J5-01 19 53086056 53086056 C T ZNF701 Silent p.C314C 0.50 TCGA-OR-A5J5-01 19 53668192 53668192 A G ZNF665 Silent p.N517N 0.57 TCGA-OR-A5J5-01 19 54314363 54314363 C T NLRP12 Missense_Mutation p.A184T 0.42 tolerated(0.25) benign(0.022) TCGA-OR-A5J5-01 19 54697319 54697319 C T TSEN34 3'UTR 0.09 TCGA-OR-A5J5-01 19 54782326 54782326 C T LILRB2 Missense_Mutation p.R349Q 0.48 tolerated(0.2) benign(0.015) TCGA-OR-A5J5-01 19 55144512 55144512 C T LILRB1 Missense_Mutation p.T335M 0.19 tolerated(0.16) benign(0.035) TCGA-OR-A5J5-01 19 55872251 55872251 C T FAM71E2 Missense_Mutation p.D261N 0.23 tolerated(0.13) benign(0.273) TCGA-OR-A5J5-01 19 56042650 56042650 C T SBK2 Missense_Mutation p.E106K 0.25 deleterious(0) possibly_damaging(0.812) TCGA-OR-A5J5-01 19 56105009 56105009 C T FIZ1 Missense_Mutation p.V100I 0.43 deleterious(0.01) benign(0.312) TCGA-OR-A5J5-01 19 57066397 57066397 G A ZFP28 Missense_Mutation p.R748H 0.21 deleterious(0.05) probably_damaging(0.994) TCGA-OR-A5J5-01 19 57723746 57723746 C T ZNF264 Silent p.F427F 0.17 TCGA-OR-A5J5-01 19 57765484 57765484 G A ZNF805 Missense_Mutation p.G433R 0.41 deleterious(0.03) probably_damaging(0.99) TCGA-OR-A5J5-01 19 58004983 58004983 G A ZNF419 Missense_Mutation p.S354N 0.17 tolerated(0.26) possibly_damaging(0.662) TCGA-OR-A5J5-01 19 58600183 58600183 G A ZSCAN18 Missense_Mutation p.A198V 0.52 tolerated(0.27) benign(0.365) TCGA-OR-A5J5-01 19 6833562 6833562 G A VAV1 Missense_Mutation p.R545H 0.39 tolerated(0.2) probably_damaging(0.932) TCGA-OR-A5J5-01 19 7267587 7267587 G A INSR Missense_Mutation p.R141W 0.26 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 19 7682925 7682925 C T CAMSAP3 Silent p.G1271G 0.10 TCGA-OR-A5J5-01 19 9049154 9049154 G A MUC16 Missense_Mutation p.T10826M 0.23 benign(0.042) TCGA-OR-A5J5-01 1 10197164 10197164 C T UBE4B Missense_Mutation p.T755M 0.88 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 1 109273459 109273459 C T FNDC7 Silent p.C596C 0.06 TCGA-OR-A5J5-01 1 110467421 110467421 G A CSF1 Silent p.A531A 0.39 TCGA-OR-A5J5-01 1 113237220 113237220 G A MOV10 Missense_Mutation p.V481I 0.86 tolerated(0.2) benign(0.001) TCGA-OR-A5J5-01 1 118439565 118439568 GAAA - GDAP2 Frame_Shift_Del p.F281Lfs*19 0.90 TCGA-OR-A5J5-01 1 144598590 144598590 G A RP11-640M9.2 RNA 0.13 TCGA-OR-A5J5-01 1 150524694 150524694 C T ADAMTSL4 5'UTR 0.89 TCGA-OR-A5J5-01 1 150531111 150531111 G A ADAMTSL4 Missense_Mutation p.D849N 0.11 deleterious(0.01) possibly_damaging(0.707) TCGA-OR-A5J5-01 1 154141804 154141804 G A TPM3 Silent p.H277H 0.48 TCGA-OR-A5J5-01 1 156908212 156908212 G A ARHGEF11 Missense_Mutation p.T1397M 0.88 tolerated_low_confidence(0.1) possibly_damaging(0.683) TCGA-OR-A5J5-01 1 157545297 157545297 C T FCRL4 3'UTR 0.43 TCGA-OR-A5J5-01 1 160100011 160100011 C T ATP1A2 Silent p.L527L 0.93 TCGA-OR-A5J5-01 1 161130593 161130593 C T USP21 Missense_Mutation p.R55W 0.93 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-OR-A5J5-01 1 16254767 16254767 C T SPEN Missense_Mutation p.R678W 0.92 probably_damaging(0.997) TCGA-OR-A5J5-01 1 177245455 177245455 C T BRINP2 Silent p.C299C 0.45 TCGA-OR-A5J5-01 1 17982377 17982377 G - ARHGEF10L Frame_Shift_Del p.G830Afs*15 0.52 TCGA-OR-A5J5-01 1 180914481 180914481 C T KIAA1614 Silent p.D1110D 0.88 TCGA-OR-A5J5-01 1 203682343 203682343 G A ATP2B4 Silent p.A754A 0.35 TCGA-OR-A5J5-01 1 206566076 206566076 G A SRGAP2 Missense_Mutation p.D87N 0.12 deleterious(0.02) possibly_damaging(0.631) TCGA-OR-A5J5-01 1 206757996 206757996 G A RASSF5 Missense_Mutation p.R323Q 0.86 tolerated(0.33) benign(0.017) TCGA-OR-A5J5-01 1 207642044 207642044 C - CR2 Frame_Shift_Del p.T209Hfs*10 0.49 TCGA-OR-A5J5-01 1 208390432 208390432 C T PLXNA2 Missense_Mutation p.R279H 0.88 deleterious(0) probably_damaging(0.995) TCGA-OR-A5J5-01 1 21276548 21276548 G A EIF4G3 Silent p.S207S 0.47 TCGA-OR-A5J5-01 1 223947018 223947018 C T CAPN2 Missense_Mutation p.T455M 0.03 tolerated(0.22) probably_damaging(0.975) TCGA-OR-A5J5-01 1 22965950 22965950 G A C1QA 3'UTR 1.00 TCGA-OR-A5J5-01 1 237791320 237791320 G A RYR2 Missense_Mutation p.R2127Q 0.04 probably_damaging(1) TCGA-OR-A5J5-01 1 237811912 237811912 C T RYR2 Missense_Mutation p.T2504M 0.05 probably_damaging(0.996) TCGA-OR-A5J5-01 1 24993380 24993380 G A SRRM1 Missense_Mutation p.R568Q 0.39 unknown(0) TCGA-OR-A5J5-01 1 27278436 27278436 G A C1orf172 Missense_Mutation p.R146W 0.08 deleterious(0) probably_damaging(0.984) TCGA-OR-A5J5-01 1 27429001 27429001 G A SLC9A1 Silent p.G565G 0.93 TCGA-OR-A5J5-01 1 33954759 33954759 G A ZSCAN20 Missense_Mutation p.V217I 0.49 tolerated(0.46) benign(0.004) TCGA-OR-A5J5-01 1 35251228 35251228 C T GJB3 3'UTR 0.90 TCGA-OR-A5J5-01 1 36935323 36935323 G - CSF3R Frame_Shift_Del p.S469Afs*22 0.49 TCGA-OR-A5J5-01 1 39876656 39876656 T C KIAA0754 Missense_Mutation p.V104A 0.77 benign(0.001) TCGA-OR-A5J5-01 1 39880128 39880128 C T MACF1 Intron 0.87 TCGA-OR-A5J5-01 1 44402375 44402375 G A ARTN Missense_Mutation p.V209I 0.34 deleterious(0.02) possibly_damaging(0.872) TCGA-OR-A5J5-01 1 48701436 48701436 G A SLC5A9 Missense_Mutation p.A418T 0.05 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 1 57173340 57173341 - T PRKAA2 Frame_Shift_Ins p.E541* 0.10 TCGA-OR-A5J5-01 1 57415368 57415368 G A C8B Missense_Mutation p.R242C 0.86 deleterious(0.02) possibly_damaging(0.663) TCGA-OR-A5J5-01 1 6194223 6194223 G A CHD5 Missense_Mutation p.R1037W 0.85 deleterious(0) possibly_damaging(0.676) TCGA-OR-A5J5-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.80 TCGA-OR-A5J5-01 1 6521347 6521347 C T TNFRSF25 3'UTR 0.06 TCGA-OR-A5J5-01 1 6534211 6534211 A G PLEKHG5 Silent p.P230P 0.74 TCGA-OR-A5J5-01 1 7887490 7887490 G T PER3 Missense_Mutation p.G826V 0.84 tolerated(0.27) probably_damaging(0.972) TCGA-OR-A5J5-01 20 13695562 13695563 TT - ESF1 Frame_Shift_Del p.K838Nfs*23 0.40 TCGA-OR-A5J5-01 20 18424085 18424085 C T DZANK1 Missense_Mutation p.R218Q 0.93 deleterious(0) probably_damaging(0.929) TCGA-OR-A5J5-01 20 1961122 1961122 G T PDYN Nonsense_Mutation p.Y204* 0.93 TCGA-OR-A5J5-01 20 30785207 30785207 C T PLAGL2 Missense_Mutation p.R180H 0.13 deleterious(0.01) possibly_damaging(0.781) TCGA-OR-A5J5-01 20 31189498 31189498 C T RP11-410N8.4 Silent p.N10N 0.38 TCGA-OR-A5J5-01 20 3127458 3127458 C T FASTKD5 Silent p.A753A 0.89 TCGA-OR-A5J5-01 20 34778675 34778675 G A EPB41L1 Missense_Mutation p.R419H 0.84 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 20 3734755 3734755 C T C20orf27 Missense_Mutation p.A184T 0.27 tolerated(0.18) benign(0.043) TCGA-OR-A5J5-01 20 39793679 39793679 G A PLCG1 Missense_Mutation p.V442M 0.45 deleterious(0.02) probably_damaging(1) TCGA-OR-A5J5-01 20 42328526 42328526 C T MYBL2 Nonsense_Mutation p.R265* 0.96 TCGA-OR-A5J5-01 20 61522425 61522425 C T DIDO1 Missense_Mutation p.R1143H 0.05 probably_damaging(1) TCGA-OR-A5J5-01 21 33065781 33065781 G A SCAF4 Nonsense_Mutation p.R447* 0.24 TCGA-OR-A5J5-01 21 35208767 35208767 C T ITSN1 Silent p.Y1164Y 0.44 TCGA-OR-A5J5-01 21 38098480 38098480 G A SIM2 Missense_Mutation p.D202N 0.08 deleterious(0.04) possibly_damaging(0.851) TCGA-OR-A5J5-01 21 40667746 40667746 T - BRWD1 Frame_Shift_Del p.M178Cfs*15 0.49 TCGA-OR-A5J5-01 21 41033159 41033159 G A B3GALT5 Missense_Mutation p.V225M 0.88 tolerated(0.13) probably_damaging(0.996) TCGA-OR-A5J5-01 21 45736189 45736189 C T PFKL Silent p.N270N 0.36 TCGA-OR-A5J5-01 21 45744758 45744758 C T PFKL Missense_Mutation p.T612M 0.57 tolerated(0.1) probably_damaging(0.977) TCGA-OR-A5J5-01 21 46900432 46900432 C T COL18A1 Missense_Mutation p.R664W 0.10 possibly_damaging(0.835) TCGA-OR-A5J5-01 22 18900804 18900804 G A PRODH Missense_Mutation p.R563C 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 22 24057315 24057315 G A KB-1572G7.2 RNA 0.89 TCGA-OR-A5J5-01 22 29444383 29444383 C T ZNRF3 Missense_Mutation p.R307W 0.89 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 22 37466579 37466579 C - TMPRSS6 Frame_Shift_Del p.A605Pfs*8 0.51 TCGA-OR-A5J5-01 22 39966861 39966861 C T CACNA1I Missense_Mutation p.P35L 0.09 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-OR-A5J5-01 22 40661638 40661638 A - TNRC6B Frame_Shift_Del p.N470Mfs*33 0.44 TCGA-OR-A5J5-01 2 121744055 121744055 C T GLI2 Missense_Mutation p.R720C 0.88 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J5-01 2 157186454 157186454 G A NR4A2 Missense_Mutation p.P82L 0.07 deleterious(0.02) possibly_damaging(0.613) TCGA-OR-A5J5-01 2 163302907 163302907 G A KCNH7 Missense_Mutation p.T392I 0.04 tolerated(0.07) benign(0.035) TCGA-OR-A5J5-01 2 189898939 189898939 G A COL5A2 Missense_Mutation p.R1453W 0.15 unknown(0) TCGA-OR-A5J5-01 2 192700699 192700699 C T SDPR Missense_Mutation p.D410N 0.89 tolerated_low_confidence(0.06) benign(0.01) TCGA-OR-A5J5-01 2 201342532 201342532 C T SPATS2L Silent p.G485G 0.43 TCGA-OR-A5J5-01 2 207615686 207615686 G A MDH1B Missense_Mutation p.R342C 0.54 tolerated(0.06) benign(0.428) TCGA-OR-A5J5-01 2 217300105 217300105 C T SMARCAL1 Silent p.N510N 0.88 TCGA-OR-A5J5-01 2 219498432 219498432 C T PLCD4 Silent p.Y518Y 0.84 TCGA-OR-A5J5-01 2 27505759 27505759 G A TRIM54 Missense_Mutation p.V54I 0.89 tolerated(1) benign(0.003) TCGA-OR-A5J5-01 2 28627094 28627094 C A FOSL2 Missense_Mutation p.P75T 0.88 deleterious(0.01) possibly_damaging(0.554) TCGA-OR-A5J5-01 2 3196229 3196229 G A TSSC1 Silent p.D315D 0.10 TCGA-OR-A5J5-01 2 48602109 48602109 G A FOXN2 Missense_Mutation p.G275S 0.84 tolerated(0.8) benign(0.001) TCGA-OR-A5J5-01 2 49244660 49244660 C A FSHR Missense_Mutation p.E114D 0.87 tolerated(1) benign(0) TCGA-OR-A5J5-01 2 50149257 50149257 T A NRXN1 Missense_Mutation p.Y1490F 0.88 deleterious(0) probably_damaging(0.984) TCGA-OR-A5J5-01 2 61571010 61571010 A G USP34 Missense_Mutation p.S814P 0.87 tolerated(0.14) benign(0.101) TCGA-OR-A5J5-01 2 74273495 74273495 G A TET3 Missense_Mutation p.A16T 0.17 tolerated_low_confidence(0.78) benign(0.001) TCGA-OR-A5J5-01 2 96648100 96648100 G A ANKRD36C Missense_Mutation p.P166L 0.51 deleterious(0.01) benign(0.033) TCGA-OR-A5J5-01 3 101520735 101520735 C A NXPE3 Missense_Mutation p.F250L 0.44 deleterious(0.04) benign(0.043) TCGA-OR-A5J5-01 3 111432936 111432936 G A PLCXD2 Missense_Mutation p.R276Q 1.00 tolerated(0.12) possibly_damaging(0.498) TCGA-OR-A5J5-01 3 111718285 111718285 C T TAGLN3 Missense_Mutation p.P6S 0.29 deleterious(0.01) possibly_damaging(0.881) TCGA-OR-A5J5-01 3 111845872 111845873 - T GCSAM Frame_Shift_Ins p.I53Nfs*5 0.24 TCGA-OR-A5J5-01 3 121341510 121341510 G A FBXO40 Missense_Mutation p.V412I 0.82 tolerated(0.29) benign(0.003) TCGA-OR-A5J5-01 3 129370538 129370538 C T TMCC1 Missense_Mutation p.R583Q 0.90 deleterious(0) probably_damaging(0.968) TCGA-OR-A5J5-01 3 132407633 132407633 C T NPHP3 Missense_Mutation p.V996M 0.11 tolerated(0.18) benign(0.298) TCGA-OR-A5J5-01 3 134322975 134322975 C T KY Missense_Mutation p.G478R 0.08 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 3 136701009 136701009 G A IL20RB Missense_Mutation p.E75K 0.34 deleterious(0) possibly_damaging(0.85) TCGA-OR-A5J5-01 3 142987727 142987727 T C SLC9A9 Missense_Mutation p.Q567R 0.42 tolerated(0.2) benign(0.001) TCGA-OR-A5J5-01 3 14552686 14552686 G A GRIP2 RNA 0.84 TCGA-OR-A5J5-01 3 15071882 15071882 G A NR2C2 Missense_Mutation p.V364I 0.91 tolerated(0.14) benign(0.001) TCGA-OR-A5J5-01 3 151164728 151164728 C A IGSF10 Missense_Mutation p.R1014M 0.88 deleterious(0) probably_damaging(0.937) TCGA-OR-A5J5-01 3 164907802 164907802 G A SLITRK3 Nonsense_Mutation p.R273* 0.90 TCGA-OR-A5J5-01 3 169500336 169500336 G A MYNN Missense_Mutation p.R435H 0.04 deleterious(0) probably_damaging(0.945) TCGA-OR-A5J5-01 3 184100913 184100913 G A CHRD Missense_Mutation p.R392H 0.43 deleterious(0.04) benign(0.091) TCGA-OR-A5J5-01 3 185766567 185766567 G A ETV5 Missense_Mutation p.P465L 0.89 deleterious(0) probably_damaging(0.965) TCGA-OR-A5J5-01 3 39180220 39180220 G A TTC21A Missense_Mutation p.D1302N 0.88 tolerated(1) benign(0) TCGA-OR-A5J5-01 3 42771959 42771959 C T CCDC13 Missense_Mutation p.R573Q 0.87 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 3 47036641 47036641 G A NBEAL2 Silent p.A472A 0.92 TCGA-OR-A5J5-01 3 47312930 47312930 G A KIF9 Missense_Mutation p.R130C 0.10 deleterious(0.03) probably_damaging(0.969) TCGA-OR-A5J5-01 3 47465429 47465429 C T SCAP Missense_Mutation p.A382T 0.86 deleterious(0) probably_damaging(0.993) TCGA-OR-A5J5-01 3 49694175 49694175 C T BSN Missense_Mutation p.R2396W 0.37 unknown(0) TCGA-OR-A5J5-01 3 52475300 52475300 G A SEMA3G Missense_Mutation p.R265C 0.95 deleterious(0) possibly_damaging(0.613) TCGA-OR-A5J5-01 3 65365023 65365023 C T MAGI1 Missense_Mutation p.D970N 0.99 deleterious(0) probably_damaging(0.964) TCGA-OR-A5J5-01 4 10086077 10086077 G A WDR1 Silent p.D343D 0.16 TCGA-OR-A5J5-01 4 1374002 1374002 G A UVSSA Missense_Mutation p.R579H 0.49 deleterious(0) probably_damaging(0.998) TCGA-OR-A5J5-01 4 138442414 138442414 A G PCDH18 Silent p.S1059S 0.39 TCGA-OR-A5J5-01 4 156680986 156680986 C T GUCY1B3 Silent p.Y17Y 0.52 TCGA-OR-A5J5-01 4 17636715 17636715 C T FAM184B Missense_Mutation p.A936T 0.28 tolerated(0.06) benign(0.033) TCGA-OR-A5J5-01 4 20469421 20469421 C T SLIT2 Missense_Mutation p.R148C 0.04 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 4 23803958 23803958 C T PPARGC1A Missense_Mutation p.R677H 0.43 deleterious(0) unknown(0) TCGA-OR-A5J5-01 4 24821571 24821571 C T CCDC149 Missense_Mutation p.D357N 0.45 tolerated_low_confidence(0.1) probably_damaging(0.947) TCGA-OR-A5J5-01 4 2933798 2933798 C T MFSD10 Missense_Mutation p.R259H 0.16 tolerated(0.33) benign(0.01) TCGA-OR-A5J5-01 4 3768709 3768709 G A ADRA2C Missense_Mutation p.V126M 0.25 deleterious(0.03) benign(0.174) TCGA-OR-A5J5-01 4 48555392 48555394 CTT - FRYL In_Frame_Del p.K1425del 0.35 TCGA-OR-A5J5-01 4 55973911 55973911 C T KDR Missense_Mutation p.E469K 0.51 tolerated(0.94) benign(0.001) TCGA-OR-A5J5-01 4 5844857 5844857 G A CRMP1 Missense_Mutation p.T332M 0.09 deleterious(0) possibly_damaging(0.862) TCGA-OR-A5J5-01 4 7716056 7716056 G A SORCS2 Silent p.A693A 0.05 TCGA-OR-A5J5-01 4 7738821 7738821 G A SORCS2 Missense_Mutation p.A1113T 0.40 tolerated(0.16) probably_damaging(0.999) TCGA-OR-A5J5-01 4 83347682 83347682 C T HNRNPDL Missense_Mutation p.G376R 0.46 deleterious_low_confidence(0.02) benign(0.006) TCGA-OR-A5J5-01 4 88996108 88996108 C T PKD2 Silent p.A889A 0.26 TCGA-OR-A5J5-01 4 89670963 89670963 G A FAM13A Missense_Mutation p.R680W 0.27 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J5-01 4 99993536 99993536 C T ADH5 3'UTR 0.20 TCGA-OR-A5J5-01 5 131014837 131014837 G A FNIP1 Nonsense_Mutation p.R412* 0.52 TCGA-OR-A5J5-01 5 133896521 133896521 T C JADE2 Silent p.I186I 0.13 TCGA-OR-A5J5-01 5 133896569 133896569 C T JADE2 Silent p.C202C 0.51 TCGA-OR-A5J5-01 5 1339097 1339097 C T CLPTM1L Silent p.P159P 0.50 TCGA-OR-A5J5-01 5 135692634 135692634 C T TRPC7 Missense_Mutation p.D148N 0.49 tolerated(0.09) benign(0.043) TCGA-OR-A5J5-01 5 140053749 140053749 G A HARS 3'UTR 0.44 TCGA-OR-A5J5-01 5 140181912 140181912 G A PCDHA3 Missense_Mutation p.R377H 0.23 tolerated_low_confidence(0.05) benign(0.445) TCGA-OR-A5J5-01 5 140214422 140214422 T C PCDHA7 Missense_Mutation p.F152L 0.03 deleterious_low_confidence(0.02) benign(0.29) TCGA-OR-A5J5-01 5 140515676 140515676 G A PCDHB5 Silent p.P220P 0.28 TCGA-OR-A5J5-01 5 140589396 140589396 C A PCDHB12 Missense_Mutation p.P306H 0.21 tolerated_low_confidence(0.19) benign(0.021) TCGA-OR-A5J5-01 5 140865109 140865109 C T PCDHGC4 Silent p.I123I 0.05 TCGA-OR-A5J5-01 5 141051181 141051181 G A ARAP3 Missense_Mutation p.R604W 0.43 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 5 149435889 149435889 C T CSF1R Missense_Mutation p.V779M 0.27 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 5 159781908 159781908 G C C1QTNF2 Missense_Mutation p.S82R 0.80 deleterious(0.02) unknown(0) TCGA-OR-A5J5-01 5 164028057 164028057 C T CTC-340A15.2 RNA 0.46 TCGA-OR-A5J5-01 5 16701081 16701081 C T MYO10 Silent p.A1141A 0.45 TCGA-OR-A5J5-01 5 167643865 167643865 G A TENM2 Missense_Mutation p.G1391S 0.04 deleterious(0) possibly_damaging(0.881) TCGA-OR-A5J5-01 5 175843341 175843341 G C CLTB Missense_Mutation p.F8L 0.45 tolerated(0.26) unknown(0) TCGA-OR-A5J5-01 5 175843342 175843342 A G CLTB Missense_Mutation p.F8S 0.45 deleterious(0.05) unknown(0) TCGA-OR-A5J5-01 5 176520335 176520335 A G FGFR4 Intron 0.37 TCGA-OR-A5J5-01 5 176638620 176638620 C T NSD1 Missense_Mutation p.R1074C 0.08 tolerated_low_confidence(0.19) benign(0.006) TCGA-OR-A5J5-01 5 177669111 177669111 C T COL23A1 Missense_Mutation p.G505S 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 5 179394008 179394008 C T RNF130 Silent p.P316P 0.46 TCGA-OR-A5J5-01 5 31526976 31526976 G A DROSHA Nonsense_Mutation p.R22* 0.20 TCGA-OR-A5J5-01 5 34043081 34043081 G A C1QTNF3 Silent p.S50S 0.51 TCGA-OR-A5J5-01 5 5146290 5146290 G A ADAMTS16 Missense_Mutation p.V75M 0.35 tolerated(0.12) benign(0.305) TCGA-OR-A5J5-01 5 54941671 54941671 A - SLC38A9 Frame_Shift_Del p.F371Lfs*10 0.19 TCGA-OR-A5J5-01 5 56189493 56189493 C T MAP3K1 Missense_Mutation p.R1509C 0.47 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-OR-A5J5-01 5 60062450 60062450 C T ELOVL7 Missense_Mutation p.R115H 0.41 tolerated(0.32) benign(0.003) TCGA-OR-A5J5-01 5 60067887 60067887 G A ELOVL7 Missense_Mutation p.S33L 0.21 deleterious(0) possibly_damaging(0.835) TCGA-OR-A5J5-01 5 60839386 60839386 G A ZSWIM6 Missense_Mutation p.V964I 0.24 tolerated(0.18) benign(0.038) TCGA-OR-A5J5-01 5 64887383 64887383 T C TRIM23 3'UTR 0.50 TCGA-OR-A5J5-01 5 65118697 65118697 C A NLN Missense_Mutation p.P690Q 0.25 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 5 74028894 74028894 G A GFM2 Missense_Mutation p.R514C 0.18 deleterious(0) benign(0.052) TCGA-OR-A5J5-01 5 79473787 79473787 C T SERINC5 Missense_Mutation p.A99T 0.04 deleterious(0.02) probably_damaging(0.991) TCGA-OR-A5J5-01 5 92924033 92924033 G A NR2F1 Missense_Mutation p.V292I 0.50 tolerated(0.07) possibly_damaging(0.61) TCGA-OR-A5J5-01 6 107390069 107390069 G A BEND3 Missense_Mutation p.R776W 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 6 12120284 12120284 G A HIVEP1 Missense_Mutation p.V86I 0.58 tolerated(0.29) benign(0.009) TCGA-OR-A5J5-01 6 144269186 144269186 G A PLAGL1 Missense_Mutation p.R30W 0.93 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 6 151672365 151672365 C - AKAP12 Frame_Shift_Del p.T949Rfs*23 0.47 TCGA-OR-A5J5-01 6 292526 292526 C T DUSP22 5'UTR 0.32 TCGA-OR-A5J5-01 6 31759412 31759412 C T VARS Missense_Mutation p.A359T 0.87 tolerated(0.05) possibly_damaging(0.547) TCGA-OR-A5J5-01 6 33415649 33415649 G A SYNGAP1 Missense_Mutation p.R1275Q 0.45 deleterious(0) benign(0.203) TCGA-OR-A5J5-01 6 34558353 34558353 C T C6orf106 Missense_Mutation p.G296S 0.55 tolerated_low_confidence(0.13) probably_damaging(0.969) TCGA-OR-A5J5-01 6 35837637 35837637 G A SRPK1 Missense_Mutation p.R345C 0.84 tolerated(0.08) benign(0.001) TCGA-OR-A5J5-01 6 3738356 3738356 C T PXDC1 Missense_Mutation p.D95N 0.93 tolerated_low_confidence(0.14) possibly_damaging(0.767) TCGA-OR-A5J5-01 6 37619964 37619964 G A MDGA1 Missense_Mutation p.R379C 0.50 deleterious(0.01) possibly_damaging(0.877) TCGA-OR-A5J5-01 6 39835483 39835483 G A DAAM2 Missense_Mutation p.R209H 0.87 tolerated(0.55) benign(0.28) TCGA-OR-A5J5-01 6 49660590 49660590 G T CRISP2 Missense_Mutation p.L210I 0.92 tolerated(0.49) benign(0.008) TCGA-OR-A5J5-01 6 70423650 70423650 C T LMBRD1 Missense_Mutation p.A268T 0.95 tolerated(0.63) benign(0.001) TCGA-OR-A5J5-01 6 74063857 74063857 C T DPPA5 Missense_Mutation p.R31Q 0.42 tolerated(0.39) benign(0.005) TCGA-OR-A5J5-01 6 96660412 96660412 A - FUT9 3'UTR 0.86 TCGA-OR-A5J5-01 7 100778833 100778833 G A SERPINE1 Missense_Mutation p.D320N 0.06 tolerated(0.12) benign(0.284) TCGA-OR-A5J5-01 7 123302045 123302045 C T LMOD2 Silent p.D135D 0.66 TCGA-OR-A5J5-01 7 133932369 133932369 G A LRGUK Missense_Mutation p.R682H 0.57 deleterious(0) benign(0.346) TCGA-OR-A5J5-01 7 135323345 135323345 T C NUP205 Missense_Mutation p.L1769S 0.19 tolerated(0.27) benign(0.001) TCGA-OR-A5J5-01 7 138417706 138417706 G A ATP6V0A4 Silent p.H608H 0.36 TCGA-OR-A5J5-01 7 139818942 139818942 A G KDM7A Missense_Mutation p.V406A 0.40 tolerated(0.1) possibly_damaging(0.836) TCGA-OR-A5J5-01 7 142965205 142965205 G A GSTK1 Missense_Mutation p.V243M 0.68 deleterious(0) benign(0.382) TCGA-OR-A5J5-01 7 148801944 148801944 C T ZNF425 Missense_Mutation p.R340H 0.30 tolerated(0.06) probably_damaging(0.938) TCGA-OR-A5J5-01 7 150938652 150938652 G A SMARCD3 Nonsense_Mutation p.Q289* 0.23 TCGA-OR-A5J5-01 7 154863297 154863297 C T HTR5A Missense_Mutation p.R230C 0.24 deleterious(0.01) possibly_damaging(0.643) TCGA-OR-A5J5-01 7 155534695 155534695 G A RBM33 Silent p.S744S 0.24 TCGA-OR-A5J5-01 7 157013470 157013470 G A UBE3C Missense_Mutation p.V668M 0.12 tolerated(0.12) benign(0.302) TCGA-OR-A5J5-01 7 1784620 1784620 G A ELFN1 Missense_Mutation p.G130S 0.08 deleterious(0) probably_damaging(0.909) TCGA-OR-A5J5-01 7 21646323 21646323 C T DNAH11 Missense_Mutation p.A1275V 0.19 benign(0.019) TCGA-OR-A5J5-01 7 43827548 43827548 G A BLVRA Missense_Mutation p.G20S 0.29 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 7 44114081 44114081 A G POLM Missense_Mutation p.V295A 0.59 tolerated(1) benign(0) TCGA-OR-A5J5-01 7 44747186 44747186 G A OGDH Silent p.S934S 0.61 TCGA-OR-A5J5-01 7 4799094 4799094 G A FOXK1 Missense_Mutation p.V522I 0.36 tolerated(0.14) possibly_damaging(0.459) TCGA-OR-A5J5-01 7 5352513 5352515 GAA - TNRC18 In_Frame_Del p.S2671del 0.27 TCGA-OR-A5J5-01 7 6561142 6561142 G A GRID2IP Silent p.H334H 0.33 TCGA-OR-A5J5-01 7 76942815 76942815 C T GSAP Missense_Mutation p.R754Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J5-01 7 81637024 81637024 C T CACNA2D1 Missense_Mutation p.G471S 0.34 tolerated(0.57) benign(0.007) TCGA-OR-A5J5-01 7 86415919 86415919 G A GRM3 Missense_Mutation p.V271I 0.37 tolerated(0.07) benign(0.049) TCGA-OR-A5J5-01 7 938551 938551 G A ADAP1 3'UTR 0.67 TCGA-OR-A5J5-01 7 97854151 97854151 C T TECPR1 Silent p.T884T 0.30 TCGA-OR-A5J5-01 7 98609726 98609726 C T TRRAP Silent p.D3776D 0.33 TCGA-OR-A5J5-01 8 10466464 10466464 G A RP1L1 Missense_Mutation p.T1715M 0.30 unknown(0) TCGA-OR-A5J5-01 8 106814998 106814998 G A ZFPM2 Silent p.P896P 0.18 TCGA-OR-A5J5-01 8 110587864 110587864 C T SYBU Silent p.T421T 0.30 TCGA-OR-A5J5-01 8 133823330 133823330 A - PHF20L1 Frame_Shift_Del p.K298Rfs*66 0.38 TCGA-OR-A5J5-01 8 139278014 139278014 G A FAM135B Missense_Mutation p.R77W 0.06 deleterious(0) probably_damaging(0.994) TCGA-OR-A5J5-01 8 144653155 144653155 G A MROH6 Silent p.A204A 0.09 TCGA-OR-A5J5-01 8 145094825 145094825 C T SPATC1 Missense_Mutation p.P76L 0.23 tolerated(0.06) benign(0.066) TCGA-OR-A5J5-01 8 145512978 145512979 - G BOP1 Frame_Shift_Ins p.L36Pfs*34 0.24 TCGA-OR-A5J5-01 8 145620718 145620718 G T CPSF1 Missense_Mutation p.P1010T 0.33 tolerated(0.12) benign(0.133) TCGA-OR-A5J5-01 8 145736909 145736909 C T RECQL4 Missense_Mutation p.G1178R 0.23 deleterious(0) probably_damaging(0.996) TCGA-OR-A5J5-01 8 22421834 22421834 G A SORBS3 Silent p.T238T 0.64 TCGA-OR-A5J5-01 8 23174525 23174525 C T LOXL2 Missense_Mutation p.G525R 0.05 deleterious(0.04) probably_damaging(0.948) TCGA-OR-A5J5-01 8 3047597 3047597 G A CSMD1 Silent p.P1745P 0.35 TCGA-OR-A5J5-01 8 3432588 3432588 G A CSMD1 Missense_Mutation p.A408V 0.31 possibly_damaging(0.452) TCGA-OR-A5J5-01 8 35579761 35579761 C T UNC5D Missense_Mutation p.S384L 0.67 tolerated(0.09) benign(0.039) TCGA-OR-A5J5-01 8 35588557 35588557 C G UNC5D Missense_Mutation p.A570G 0.65 tolerated(0.07) benign(0.046) TCGA-OR-A5J5-01 8 41561586 41561586 G A ANK1 Silent p.N789N 0.60 TCGA-OR-A5J5-01 8 54147371 54147371 C T OPRK1 Silent p.S186S 0.33 TCGA-OR-A5J5-01 8 81905453 81905453 C T PAG1 Missense_Mutation p.A4T 0.72 tolerated(0.47) benign(0.002) TCGA-OR-A5J5-01 9 100618036 100618036 C T FOXE1 3'UTR 0.96 TCGA-OR-A5J5-01 9 100618100 100618100 C T FOXE1 3'UTR 0.95 TCGA-OR-A5J5-01 9 112042162 112042162 A G EPB41L4B Missense_Mutation p.Y116H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5J5-01 9 116176059 116176059 G A C9orf43 Missense_Mutation p.V58M 0.94 deleterious(0) possibly_damaging(0.619) TCGA-OR-A5J5-01 9 116269824 116269824 G A RGS3 Missense_Mutation p.R448H 0.14 tolerated(0.15) benign(0.006) TCGA-OR-A5J5-01 9 125861009 125861009 C T RABGAP1 Missense_Mutation p.R917C 0.28 deleterious(0) probably_damaging(0.99) TCGA-OR-A5J5-01 9 133799257 133799257 G A FIBCD1 Silent p.P241P 0.94 TCGA-OR-A5J5-01 9 138719314 138719315 - G CAMSAP1 Frame_Shift_Ins p.V388Rfs*19 0.10 TCGA-OR-A5J5-01 9 139299638 139299638 G A SDCCAG3 Missense_Mutation p.R304W 0.95 deleterious(0.03) benign(0.105) TCGA-OR-A5J5-01 9 140373513 140373513 T C PNPLA7 Missense_Mutation p.K920E 0.15 deleterious(0.01) benign(0.275) TCGA-OR-A5J5-01 9 14088270 14088270 A C NFIB 3'UTR 0.94 TCGA-OR-A5J5-01 9 16419579 16419579 G A BNC2 Missense_Mutation p.S903L 0.94 tolerated(0.65) benign(0.028) TCGA-OR-A5J5-01 9 2643347 2643347 C T VLDLR Silent p.C212C 0.25 TCGA-OR-A5J5-01 9 34306372 34306372 G A KIF24 Missense_Mutation p.R231C 0.92 deleterious(0) probably_damaging(1) TCGA-OR-A5J5-01 9 35715145 35715145 G A TLN1 Missense_Mutation p.R889W 0.05 deleterious(0.01) possibly_damaging(0.727) TCGA-OR-A5J5-01 9 35853771 35853771 C T TMEM8B Silent p.N451N 0.87 TCGA-OR-A5J5-01 9 37428531 37428531 C T GRHPR Missense_Mutation p.T152M 0.93 deleterious(0.02) benign(0.441) TCGA-OR-A5J5-01 9 712006 712006 G A KANK1 Missense_Mutation p.V414M 0.07 tolerated(0.09) benign(0.063) TCGA-OR-A5J5-01 9 71861604 71861604 A G TJP2 Splice_Site p.X887_splice 1.00 TCGA-OR-A5J5-01 9 738458 738458 C T KANK1 Silent p.S1169S 0.19 TCGA-OR-A5J5-01 9 74305086 74305086 C T TMEM2 Missense_Mutation p.R1258H 0.05 tolerated(0.1) benign(0.157) TCGA-OR-A5J5-01 9 79933230 79933230 C T VPS13A Missense_Mutation p.T1679M 0.93 tolerated(0.14) benign(0.004) TCGA-OR-A5J5-01 9 85670484 85670484 C T RASEF Intron 0.18 TCGA-OR-A5J5-01 9 90113980 90113980 G A DAPK1 5'UTR 0.23 TCGA-OR-A5J5-01 9 96021245 96021245 G A WNK2 Silent p.T805T 0.13 TCGA-OR-A5J5-01 X 105451538 105451538 T C MUM1L1 3'UTR 0.94 TCGA-OR-A5J5-01 X 106890920 106890920 C T PRPS1 Silent p.N263N 0.48 TCGA-OR-A5J5-01 X 110496401 110496402 - T CAPN6 Frame_Shift_Ins p.T114Nfs*20 0.48 TCGA-OR-A5J5-01 X 114141204 114141204 C T HTR2C Silent p.F201F 0.37 TCGA-OR-A5J5-01 X 119059239 119059239 G - NKAP Frame_Shift_Del p.L398Wfs*67 0.43 TCGA-OR-A5J5-01 X 119512613 119512613 C T ATP1B4 Silent p.Y299Y 0.10 TCGA-OR-A5J5-01 X 135323411 135323411 C T MAP7D3 Missense_Mutation p.R148H 0.37 deleterious(0.03) possibly_damaging(0.572) TCGA-OR-A5J5-01 X 151900373 151900373 A C MAGEA12 Missense_Mutation p.F143C 0.03 tolerated(0.2) benign(0) TCGA-OR-A5J5-01 X 1522202 1522202 C - ASMTL Frame_Shift_Del p.G609Vfs*22 0.33 TCGA-OR-A5J5-01 X 152807870 152807870 C T ATP2B3 Missense_Mutation p.R252C 0.41 deleterious(0.02) probably_damaging(0.934) TCGA-OR-A5J5-01 X 153042767 153042767 C T PLXNB3 Missense_Mutation p.R1701W 0.43 deleterious(0) probably_damaging(0.944) TCGA-OR-A5J5-01 X 153073942 153073942 G A PDZD4 Missense_Mutation p.R57W 0.51 deleterious(0) probably_damaging(0.941) TCGA-OR-A5J5-01 X 153595114 153595114 C T FLNA Missense_Mutation p.G325R 0.93 deleterious(0) probably_damaging(0.98) TCGA-OR-A5J5-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.82 TCGA-OR-A5J5-01 X 69902635 69902635 G A TEX11 Missense_Mutation p.R364C 0.42 deleterious(0) probably_damaging(0.91) TCGA-OR-A5J5-01 X 73960665 73960665 G A KIAA2022 Missense_Mutation p.R1243C 0.04 tolerated_low_confidence(0.07) benign(0.006) TCGA-OR-A5J5-01 X 73961524 73961524 G A KIAA2022 Silent p.T956T 0.09 TCGA-OR-A5J5-01 X 9673126 9673126 G A TBL1X Missense_Mutation p.R403H 0.91 tolerated(0.16) benign(0.056) TCGA-OR-A5J6-01 10 129839226 129839226 C T PTPRE Silent p.A27A 0.05 TCGA-OR-A5J6-01 10 55582281 55582281 G A PCDH15 Silent p.A1737A 0.21 TCGA-OR-A5J6-01 11 1778638 1778638 G A CTSD Missense_Mutation p.S207F 0.10 deleterious(0) probably_damaging(0.994) TCGA-OR-A5J6-01 11 55873285 55873285 T C OR8H2 Missense_Mutation p.I256T 0.04 deleterious(0.04) benign(0.119) TCGA-OR-A5J6-01 12 113285539 113285539 C A RPH3A Missense_Mutation p.P41H 0.14 tolerated(0.08) benign(0.014) TCGA-OR-A5J6-01 12 24989464 24989464 A G BCAT1 Missense_Mutation p.L307P 0.17 deleterious(0) probably_damaging(0.996) TCGA-OR-A5J6-01 12 3805999 3805999 T A EFCAB4B Missense_Mutation p.Q56L 0.25 deleterious(0.02) benign(0.394) TCGA-OR-A5J6-01 12 54854183 54854183 C A GTSF1 Silent p.P155P 0.20 TCGA-OR-A5J6-01 12 7260847 7260847 T C C1RL Silent p.T100T 0.07 TCGA-OR-A5J6-01 12 76447086 76447086 G C NAP1L1 Missense_Mutation p.T272S 0.05 deleterious(0.02) possibly_damaging(0.714) TCGA-OR-A5J6-01 12 88478595 88478595 G T CEP290 Missense_Mutation p.A1491E 0.20 probably_damaging(0.957) TCGA-OR-A5J6-01 16 81232405 81232405 A G PKD1L2 Silent p.L469L 0.28 TCGA-OR-A5J6-01 17 42153148 42153148 G A G6PC3 Missense_Mutation p.G260S 0.24 deleterious(0.01) probably_damaging(1) TCGA-OR-A5J6-01 19 42841342 42841342 G A MEGF8 Silent p.P499P 0.21 TCGA-OR-A5J6-01 19 53994970 53994970 A G ZNF813 Missense_Mutation p.Y495C 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5J6-01 1 248039251 248039251 C T TRIM58 Silent p.T307T 0.27 TCGA-OR-A5J6-01 1 39852989 39852989 A G MACF1 Silent p.K2763K 0.04 TCGA-OR-A5J6-01 1 59004877 59004877 T C OMA1 Silent p.T30T 0.11 TCGA-OR-A5J6-01 21 33044617 33044617 T C SCAF4 Missense_Mutation p.T847A 0.26 unknown(0) TCGA-OR-A5J6-01 2 110053528 110053528 C G SH3RF3 Missense_Mutation p.S585W 0.20 deleterious(0) probably_damaging(0.993) TCGA-OR-A5J6-01 2 120439176 120439176 C G TMEM177 Missense_Mutation p.F249L 0.18 deleterious(0) probably_damaging(0.99) TCGA-OR-A5J6-01 2 166201291 166201291 A T SCN2A Missense_Mutation p.H930L 0.22 deleterious(0) possibly_damaging(0.826) TCGA-OR-A5J6-01 3 124629329 124629329 T C MUC13 Missense_Mutation p.T423A 0.25 deleterious(0) probably_damaging(0.992) TCGA-OR-A5J6-01 3 73096477 73096477 G C PPP4R2 Missense_Mutation p.R86T 0.03 deleterious(0) probably_damaging(1) TCGA-OR-A5J6-01 4 145916557 145916557 T C ANAPC10 Missense_Mutation p.I176V 0.24 tolerated(1) benign(0.001) TCGA-OR-A5J6-01 4 73280551 73280551 G C ADAMTS3 Silent p.S214S 0.16 TCGA-OR-A5J6-01 4 75066988 75066988 A G MTHFD2L Missense_Mutation p.T205A 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5J6-01 5 128864313 128864313 T A ADAMTS19 Missense_Mutation p.M418K 0.17 tolerated(0.29) benign(0.216) TCGA-OR-A5J6-01 5 151231120 151231120 A T GLRA1 Missense_Mutation p.M248K 0.23 deleterious(0) possibly_damaging(0.763) TCGA-OR-A5J6-01 5 76932656 76932656 G C OTP Missense_Mutation p.S146C 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5J6-01 6 160453715 160453715 A G IGF2R Missense_Mutation p.I339V 0.16 tolerated(0.29) benign(0.116) TCGA-OR-A5J6-01 6 26157045 26157045 G T HIST1H1E Missense_Mutation p.G143W 0.27 deleterious(0) unknown(0) TCGA-OR-A5J6-01 6 43485110 43485110 G A POLR1C Missense_Mutation p.E46K 0.05 tolerated(1) benign(0.001) TCGA-OR-A5J6-01 7 110764308 110764308 T C LRRN3 Missense_Mutation p.Y494H 0.17 deleterious(0) probably_damaging(1) TCGA-OR-A5J6-01 7 116557779 116557779 A G CAPZA2 Splice_Site p.X241_splice 0.21 TCGA-OR-A5J6-01 8 33230032 33230032 A G FUT10 3'UTR 0.25 TCGA-OR-A5J6-01 8 62596612 62596612 T C ASPH Missense_Mutation p.Y80C 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-OR-A5J6-01 8 87917323 87917323 A G CNBD1 Missense_Mutation p.N58S 0.24 tolerated(1) benign(0.001) TCGA-OR-A5J6-01 9 135447854 135447854 T C C9orf171 Missense_Mutation p.V307A 0.32 tolerated(0.3) benign(0.065) TCGA-OR-A5J6-01 X 18631388 18631388 G T CDKL5 Missense_Mutation p.D757Y 0.19 deleterious_low_confidence(0) benign(0.302) TCGA-OR-A5J6-01 X 19587243 19587243 G A SH3KBP1 Silent p.L454L 0.23 TCGA-OR-A5J7-01 10 120923681 120923681 T A SFXN4 Missense_Mutation p.T47S 0.30 tolerated(0.1) benign(0.033) TCGA-OR-A5J7-01 10 120931958 120931958 C G PRDX3 Missense_Mutation p.D163H 0.34 deleterious(0) probably_damaging(1) TCGA-OR-A5J7-01 10 43882457 43882457 G C HNRNPF Missense_Mutation p.H292Q 0.20 deleterious(0) possibly_damaging(0.89) TCGA-OR-A5J7-01 10 7618777 7618777 G C ITIH5 Missense_Mutation p.I539M 0.11 tolerated(0.06) possibly_damaging(0.851) TCGA-OR-A5J7-01 11 32635661 32635661 T G CCDC73 Missense_Mutation p.M735L 0.32 tolerated(0.35) benign(0.045) TCGA-OR-A5J7-01 11 47282859 47282859 C T NR1H3 Silent p.A189A 0.62 TCGA-OR-A5J7-01 12 101017613 101017613 G C GAS2L3 Missense_Mutation p.E344Q 0.28 tolerated(0.28) benign(0.247) TCGA-OR-A5J7-01 12 56712211 56712211 C A PAN2 Missense_Mutation p.K1128N 0.16 tolerated(0.29) benign(0.012) TCGA-OR-A5J7-01 13 41642838 41642838 A C WBP4 Missense_Mutation p.E135A 0.73 deleterious(0.01) possibly_damaging(0.9) TCGA-OR-A5J7-01 14 94845822 94845822 C T SERPINA1 Silent p.E348E 0.40 TCGA-OR-A5J7-01 15 23890728 23890728 C T MAGEL2 Missense_Mutation p.C118Y 0.36 deleterious_low_confidence(0.03) benign(0.36) TCGA-OR-A5J7-01 16 455024 455024 G A DECR2 Missense_Mutation p.R50Q 0.17 tolerated(0.07) probably_damaging(0.99) TCGA-OR-A5J7-01 17 26824288 26824288 G C SLC13A2 3'UTR 0.35 TCGA-OR-A5J7-01 18 28918353 28918353 A G DSG1 Silent p.K447K 0.40 TCGA-OR-A5J7-01 18 39637866 39637867 - T PIK3C3 Frame_Shift_Ins p.G763Wfs*19 0.20 TCGA-OR-A5J7-01 19 16611629 16611629 G A C19orf44 Missense_Mutation p.R9H 0.20 tolerated(0.67) benign(0.003) TCGA-OR-A5J7-01 19 35085180 35085180 C T SCGB2B2 Missense_Mutation p.R49H 0.23 deleterious_low_confidence(0.04) benign(0) TCGA-OR-A5J7-01 19 38375577 38375577 G A WDR87 Missense_Mutation p.L2873F 0.19 unknown(0) TCGA-OR-A5J7-01 19 49079309 49079309 C T SULT2B1 Silent p.D61D 0.16 TCGA-OR-A5J7-01 19 54578299 54578299 C T TARM1 Silent p.T46T 0.23 TCGA-OR-A5J7-01 19 8156470 8156470 G A FBN3 Silent p.I1970I 0.24 TCGA-OR-A5J7-01 1 144930794 144930794 G C PDE4DIP Intron 0.18 TCGA-OR-A5J7-01 1 161761234 161761234 C G ATF6 Missense_Mutation p.P131A 0.49 deleterious(0.01) probably_damaging(0.962) TCGA-OR-A5J7-01 1 234444906 234444906 C A SLC35F3 Missense_Mutation p.A223E 0.23 deleterious(0.02) possibly_damaging(0.809) TCGA-OR-A5J7-01 1 85036384 85036384 C T CTBS Missense_Mutation p.G66E 0.13 tolerated(0.11) benign(0.15) TCGA-OR-A5J7-01 20 19665891 19665891 G T SLC24A3 Missense_Mutation p.V404L 0.36 tolerated(0.76) benign(0.005) TCGA-OR-A5J7-01 21 33717002 33717002 C G URB1 Missense_Mutation p.W1378C 0.31 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J7-01 22 17983977 17983977 C T CECR2 Nonsense_Mutation p.R226* 0.80 TCGA-OR-A5J7-01 22 38307969 38307969 T A MICALL1 Missense_Mutation p.S53T 0.26 deleterious(0.02) benign(0.016) TCGA-OR-A5J7-01 22 38307970 38307970 C T MICALL1 Missense_Mutation p.S53L 0.26 deleterious(0) possibly_damaging(0.599) TCGA-OR-A5J7-01 22 42972611 42972611 C G SERHL2 3'Flank 0.71 TCGA-OR-A5J7-01 22 50962186 50962186 C A SCO2 Missense_Mutation p.D219Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-OR-A5J7-01 2 179569656 179569656 T A TTN Missense_Mutation p.K9881M 0.33 TCGA-OR-A5J7-01 2 190611186 190611186 A - ANKAR Frame_Shift_Del p.M1380Wfs*35 0.20 TCGA-OR-A5J7-01 2 231103027 231103027 G A SP140 Missense_Mutation p.A113T 0.24 tolerated(0.12) benign(0.17) TCGA-OR-A5J7-01 2 241075689 241075689 C - MYEOV2 Frame_Shift_Del p.V26Wfs*35 0.34 TCGA-OR-A5J7-01 2 26418025 26418026 - TGGAAA HADHA In_Frame_Ins p.S518_K519insIS 0.18 TCGA-OR-A5J7-01 2 33500091 33500091 G A LTBP1 Missense_Mutation p.E935K 0.14 tolerated(0.25) benign(0.031) TCGA-OR-A5J7-01 3 14200137 14200137 G A XPC Missense_Mutation p.R416C 0.10 deleterious(0.03) possibly_damaging(0.696) TCGA-OR-A5J7-01 3 186386808 186386808 G C HRG Missense_Mutation p.E90Q 0.16 deleterious(0.03) possibly_damaging(0.728) TCGA-OR-A5J7-01 3 37368506 37368506 G T GOLGA4 Missense_Mutation p.R1732I 0.38 benign(0.013) TCGA-OR-A5J7-01 3 39227962 39227962 G A XIRP1 Missense_Mutation p.P992L 0.41 deleterious(0.03) benign(0.357) TCGA-OR-A5J7-01 3 4715039 4715039 G C ITPR1 Missense_Mutation p.W793C 0.40 deleterious(0) possibly_damaging(0.759) TCGA-OR-A5J7-01 3 9780990 9780990 G C BRPF1 Missense_Mutation p.E303Q 0.32 deleterious(0) probably_damaging(0.99) TCGA-OR-A5J7-01 3 9787330 9787330 G C BRPF1 Missense_Mutation p.D1048H 0.29 tolerated(0.12) benign(0.357) TCGA-OR-A5J7-01 3 9792837 9792837 G A OGG1 Missense_Mutation p.V116M 0.28 tolerated(0.09) benign(0.138) TCGA-OR-A5J7-01 4 148605040 148605040 C T PRMT10 Silent p.E33E 0.32 TCGA-OR-A5J7-01 4 175184113 175184113 C T FBXO8 Missense_Mutation p.R44H 0.38 tolerated_low_confidence(0.09) benign(0.306) TCGA-OR-A5J7-01 5 1214090 1214090 A G SLC6A19 Missense_Mutation p.D266G 0.24 tolerated(0.28) benign(0.027) TCGA-OR-A5J7-01 5 13753560 13753560 C A DNAH5 Missense_Mutation p.A3552S 0.27 benign(0.364) TCGA-OR-A5J7-01 5 162911139 162911139 A G HMMR Missense_Mutation p.E617G 0.33 deleterious(0) possibly_damaging(0.86) TCGA-OR-A5J7-01 5 177059499 177059499 G A RP11-1277A3.2 Intron 0.32 TCGA-OR-A5J7-01 5 55439737 55439737 C T ANKRD55 Nonsense_Mutation p.W168* 0.21 TCGA-OR-A5J7-01 6 30670918 30670918 C T MDC1 Missense_Mutation p.R1943Q 0.09 deleterious(0.03) probably_damaging(0.962) TCGA-OR-A5J7-01 6 69665933 69665933 G C BAI3 Missense_Mutation p.E405Q 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5J7-01 7 154862761 154862761 T - HTR5A-AS1 Frame_Shift_Del p.T85Pfs*16 0.19 TCGA-OR-A5J7-01 8 110520019 110520019 G T PKHD1L1 Missense_Mutation p.D3708Y 0.38 deleterious(0.01) possibly_damaging(0.905) TCGA-OR-A5J7-01 9 103340763 103340763 A T MURC Missense_Mutation p.H113L 0.35 deleterious(0.01) benign(0.076) TCGA-OR-A5J7-01 9 113734423 113734423 A G LPAR1 5'UTR 0.31 TCGA-OR-A5J7-01 9 117853265 117853265 G T TNC Silent p.V11V 0.10 TCGA-OR-A5J7-01 9 129596326 129596326 G C ZBTB43 3'UTR 0.20 TCGA-OR-A5J7-01 X 117570692 117570692 G C WDR44 Missense_Mutation p.D627H 0.44 deleterious(0) probably_damaging(1) TCGA-OR-A5J7-01 X 151304279 151304279 C T MAGEA10 5'UTR 0.30 TCGA-OR-A5J8-01 10 115364490 115364490 C A NRAP Missense_Mutation p.A1369S 0.12 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J8-01 10 133930934 133930934 C T JAKMIP3 Silent p.G163G 0.62 TCGA-OR-A5J8-01 10 81113736 81113736 A G PPIF 3'UTR 0.12 TCGA-OR-A5J8-01 11 105924412 105924412 G T KBTBD3 Missense_Mutation p.S335Y 0.10 tolerated(0.6) probably_damaging(0.983) TCGA-OR-A5J8-01 11 111384236 111384236 A T C11orf88 5'Flank 0.13 TCGA-OR-A5J8-01 11 18451364 18451364 C T LDHC Silent p.L109L 0.07 TCGA-OR-A5J8-01 11 3249197 3249197 C T MRGPRE Missense_Mutation p.R277H 0.07 tolerated(0.09) benign(0.001) TCGA-OR-A5J8-01 11 5443642 5443642 C T OR51Q1 Missense_Mutation p.T71M 0.04 deleterious(0.01) probably_damaging(0.981) TCGA-OR-A5J8-01 11 57970736 57970736 C A OR1S2 Missense_Mutation p.R306S 0.28 deleterious(0) possibly_damaging(0.662) TCGA-OR-A5J8-01 11 71149950 71149950 G A DHCR7 Missense_Mutation p.A269V 0.15 deleterious(0) benign(0.143) TCGA-OR-A5J8-01 11 8123050 8123050 C A TUB Missense_Mutation p.Q524K 0.70 deleterious(0) probably_damaging(0.995) TCGA-OR-A5J8-01 11 92532969 92532969 C A FAT3 Missense_Mutation p.L2264I 0.15 benign(0.248) TCGA-OR-A5J8-01 12 121882310 121882310 G C KDM2B Missense_Mutation p.D711E 0.20 tolerated(0.62) benign(0.029) TCGA-OR-A5J8-01 12 129558465 129558465 G T TMEM132D Nonsense_Mutation p.C1085* 0.43 TCGA-OR-A5J8-01 12 49396583 49396583 G T PRKAG1 3'UTR 0.55 TCGA-OR-A5J8-01 12 97345221 97345221 A G NEDD1 Missense_Mutation p.H615R 0.04 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J8-01 14 101011366 101011366 G A BEGAIN Nonsense_Mutation p.Q72* 0.23 TCGA-OR-A5J8-01 14 38679240 38679240 G A SSTR1 Missense_Mutation p.A216T 0.11 tolerated(0.11) benign(0.002) TCGA-OR-A5J8-01 14 51492067 51492067 G T TRIM9 Silent p.S278S 0.06 TCGA-OR-A5J8-01 14 89817135 89817135 C G FOXN3 Silent p.S187S 0.36 TCGA-OR-A5J8-01 14 91739504 91739504 G A CCDC88C Missense_Mutation p.P1851L 0.15 tolerated(0.27) benign(0.004) TCGA-OR-A5J8-01 15 33962729 33962729 G T RYR3 Missense_Mutation p.Q1944H 0.14 benign(0.139) TCGA-OR-A5J8-01 15 42297141 42297141 C A PLA2G4E Missense_Mutation p.E187D 0.09 tolerated(0.13) benign(0.075) TCGA-OR-A5J8-01 15 45814279 45814279 C G SLC30A4 Missense_Mutation p.V92L 0.61 tolerated(0.35) benign(0.007) TCGA-OR-A5J8-01 15 51755647 51755647 G A DMXL2 Missense_Mutation p.L2619F 0.66 deleterious(0) probably_damaging(1) TCGA-OR-A5J8-01 15 93522377 93522377 C T CHD2 Missense_Mutation p.R914C 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5J8-01 16 11770853 11770853 C T SNN 3'UTR 0.11 TCGA-OR-A5J8-01 16 20974923 20974923 G T DNAH3 Missense_Mutation p.A3428D 0.17 tolerated(0.99) benign(0.002) TCGA-OR-A5J8-01 16 53326859 53326859 A G CHD9 Missense_Mutation p.Q1802R 0.12 benign(0.108) TCGA-OR-A5J8-01 16 69007975 69007975 G T TANGO6 Missense_Mutation p.D916Y 0.63 tolerated(0.95) benign(0.317) TCGA-OR-A5J8-01 16 81015457 81015457 T C CMC2 Missense_Mutation p.Y36C 0.16 tolerated(0.08) possibly_damaging(0.796) TCGA-OR-A5J8-01 17 2280076 2280076 C A SGSM2 Missense_Mutation p.L887M 0.09 deleterious(0) probably_damaging(0.984) TCGA-OR-A5J8-01 17 2280078 2280078 G T SGSM2 Silent p.L887L 0.10 TCGA-OR-A5J8-01 17 39780559 39780559 C A KRT17 Missense_Mutation p.G68V 0.11 tolerated(0.05) probably_damaging(0.972) TCGA-OR-A5J8-01 17 4436414 4436414 G T SPNS2 Missense_Mutation p.A360S 0.10 tolerated(1) benign(0.004) TCGA-OR-A5J8-01 17 48746781 48746781 C A ABCC3 Missense_Mutation p.F711L 0.08 deleterious(0) probably_damaging(0.999) TCGA-OR-A5J8-01 17 58525008 58525008 G A APPBP2 Silent p.P564P 0.11 TCGA-OR-A5J8-01 17 74003739 74003739 C A EVPL Missense_Mutation p.M1849I 0.28 deleterious(0.05) benign(0.238) TCGA-OR-A5J8-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.62 TCGA-OR-A5J8-01 17 9542007 9542007 C A WDR16 Silent p.I518I 0.65 TCGA-OR-A5J8-01 18 19053018 19053018 G T GREB1L Nonsense_Mutation p.E737* 0.28 TCGA-OR-A5J8-01 18 74637402 74637402 G C ZNF236 Missense_Mutation p.D1305H 0.11 deleterious(0) probably_damaging(0.977) TCGA-OR-A5J8-01 19 55785775 55785775 C A HSPBP1 Missense_Mutation p.A211S 0.54 deleterious(0.01) probably_damaging(0.995) TCGA-OR-A5J8-01 19 55964563 55964563 G C ISOC2 3'UTR 0.43 TCGA-OR-A5J8-01 19 5844077 5844077 C A FUT3 Missense_Mutation p.E258D 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5J8-01 1 111999313 111999313 T C ATP5F1 Missense_Mutation p.I150T 0.62 deleterious(0) benign(0.318) TCGA-OR-A5J8-01 1 114948141 114948141 C A TRIM33 Nonsense_Mutation p.E887* 0.65 TCGA-OR-A5J8-01 1 120254644 120254644 C A PHGDH 5'UTR 0.67 TCGA-OR-A5J8-01 1 159778893 159778893 C T FCRL6 Silent p.H154H 0.04 TCGA-OR-A5J8-01 1 222713605 222713605 C A HHIPL2 Silent p.S399S 0.10 TCGA-OR-A5J8-01 1 228505189 228505189 C G OBSCN Missense_Mutation p.A5486G 0.16 probably_damaging(0.997) TCGA-OR-A5J8-01 1 232615375 232615375 G T SIPA1L2 Missense_Mutation p.Q695K 0.07 deleterious(0) probably_damaging(0.965) TCGA-OR-A5J8-01 1 27440466 27440468 TGT - SLC9A1 In_Frame_Del p.N221del 0.09 TCGA-OR-A5J8-01 1 41296756 41296756 C G KCNQ4 Missense_Mutation p.S431R 0.54 deleterious(0.03) benign(0.319) TCGA-OR-A5J8-01 1 53930345 53930345 C A DMRTB1 Nonsense_Mutation p.Y262* 0.06 TCGA-OR-A5J8-01 1 59844420 59844420 G T FGGY Splice_Site p.X156_splice 0.07 TCGA-OR-A5J8-01 1 6204158 6204158 G T CHD5 Missense_Mutation p.D620E 0.03 tolerated(0.07) possibly_damaging(0.531) TCGA-OR-A5J8-01 1 92187512 92187512 C A TGFBR3 Missense_Mutation p.A359S 0.12 tolerated(0.76) benign(0.001) TCGA-OR-A5J8-01 20 34241123 34241123 G T RBM12 Missense_Mutation p.L708M 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.665) TCGA-OR-A5J8-01 20 44803312 44803312 C T CDH22 Missense_Mutation p.A774T 0.13 deleterious(0) probably_damaging(0.996) TCGA-OR-A5J8-01 20 60900600 60900600 C A LAMA5 Silent p.G1767G 0.20 TCGA-OR-A5J8-01 22 16256590 16256590 C A POTEH 3'UTR 0.03 TCGA-OR-A5J8-01 2 131519854 131519854 C T AMER3 Missense_Mutation p.A70V 0.61 tolerated(0.24) benign(0.022) TCGA-OR-A5J8-01 2 132919167 132919167 C A ANKRD30BL Missense_Mutation p.D38Y 0.10 deleterious(0) probably_damaging(0.985) TCGA-OR-A5J8-01 2 152484133 152484133 G T NEB Missense_Mutation p.S3349R 0.08 probably_damaging(0.992) TCGA-OR-A5J8-01 2 159519588 159519588 G A PKP4 Silent p.P797P 0.13 TCGA-OR-A5J8-01 2 163693261 163693261 A C KCNH7 Missense_Mutation p.I31M 0.64 deleterious(0) probably_damaging(0.996) TCGA-OR-A5J8-01 2 197122592 197122592 C A HECW2 Missense_Mutation p.G1125V 0.09 deleterious(0.01) benign(0.313) TCGA-OR-A5J8-01 2 198281581 198281581 C A SF3B1 Missense_Mutation p.V184F 0.58 deleterious(0.05) benign(0.189) TCGA-OR-A5J8-01 2 207454139 207454139 C A ADAM23 Missense_Mutation p.A620E 0.72 deleterious(0.02) benign(0.16) TCGA-OR-A5J8-01 2 215866333 215866333 C A ABCA12 Nonsense_Mutation p.E938* 0.06 TCGA-OR-A5J8-01 2 217332761 217332761 G T SMARCAL1 Nonsense_Mutation p.E746* 0.69 TCGA-OR-A5J8-01 2 242092956 242092956 G A PPP1R7 Missense_Mutation p.V40M 0.06 tolerated(0.09) unknown(0) TCGA-OR-A5J8-01 2 29754831 29754831 G A ALK Silent p.H368H 0.12 TCGA-OR-A5J8-01 2 73901043 73901043 A G ALMS1P RNA 0.27 TCGA-OR-A5J8-01 3 127842496 127842496 C A RUVBL1 Silent p.L24L 0.11 TCGA-OR-A5J8-01 3 148763946 148763946 T A HLTF Missense_Mutation p.I665F 0.69 deleterious(0) possibly_damaging(0.903) TCGA-OR-A5J8-01 3 15683552 15683552 C A BTD Missense_Mutation p.F149L 0.23 deleterious(0.04) possibly_damaging(0.902) TCGA-OR-A5J8-01 3 184075805 184075805 G T CLCN2 Missense_Mutation p.A187D 0.17 deleterious(0) probably_damaging(1) TCGA-OR-A5J8-01 3 190039777 190039777 C A CLDN1 Silent p.L73L 0.56 TCGA-OR-A5J8-01 3 38105387 38105387 T C DLEC1 Missense_Mutation p.Y384H 0.17 deleterious(0) probably_damaging(0.99) TCGA-OR-A5J8-01 4 106746955 106746955 G T GSTCD Nonsense_Mutation p.G510* 0.57 TCGA-OR-A5J8-01 4 111470691 111470691 C A ENPEP Missense_Mutation p.R745S 0.30 deleterious(0) probably_damaging(0.994) TCGA-OR-A5J8-01 4 15964327 15964327 C A FGFBP2 Missense_Mutation p.Q142H 0.80 tolerated(0.29) benign(0.002) TCGA-OR-A5J8-01 4 69417567 69417567 C T UGT2B17 Silent p.K356K 0.03 TCGA-OR-A5J8-01 4 88372877 88372877 A T NUDT9 Missense_Mutation p.D260V 0.74 tolerated(0.17) benign(0.021) TCGA-OR-A5J8-01 5 101755672 101755672 C A SLCO6A1 Missense_Mutation p.V444F 0.42 deleterious(0.01) probably_damaging(0.933) TCGA-OR-A5J8-01 5 140799203 140799203 G C PCDHGB7 Missense_Mutation p.A593P 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5J8-01 5 143586513 143586513 G T KCTD16 Missense_Mutation p.G79V 0.15 deleterious(0) probably_damaging(1) TCGA-OR-A5J8-01 5 35644627 35644627 G T SPEF2 Missense_Mutation p.K195N 0.28 deleterious(0.02) benign(0.235) TCGA-OR-A5J8-01 5 446342 446342 G C EXOC3 Missense_Mutation p.A8P 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-OR-A5J8-01 5 60831349 60831349 G C ZSWIM6 Missense_Mutation p.E762Q 0.47 deleterious(0) probably_damaging(0.982) TCGA-OR-A5J8-01 6 116574092 116574092 G C TSPYL4 Missense_Mutation p.D360E 0.09 deleterious(0.01) possibly_damaging(0.869) TCGA-OR-A5J8-01 6 133014263 133014263 C T VNN1 Silent p.L242L 0.08 TCGA-OR-A5J8-01 6 142729367 142729367 G T GPR126 Missense_Mutation p.K783N 0.05 tolerated(0.27) benign(0.139) TCGA-OR-A5J8-01 6 158900810 158900810 C A TULP4 Missense_Mutation p.H352N 0.36 deleterious(0.01) benign(0.445) TCGA-OR-A5J8-01 6 24581184 24581184 C A KIAA0319 Nonsense_Mutation p.E417* 0.17 TCGA-OR-A5J8-01 6 43230667 43230667 C T TTBK1 Missense_Mutation p.A522V 0.17 possibly_damaging(0.808) TCGA-OR-A5J8-01 6 76423518 76423518 C T SENP6 Nonsense_Mutation p.Q1036* 0.09 TCGA-OR-A5J8-01 7 111982631 111982631 C A ZNF277 Silent p.T400T 0.40 TCGA-OR-A5J8-01 7 133692487 133692487 C A EXOC4 Silent p.I862I 0.28 TCGA-OR-A5J8-01 7 142919418 142919418 C A TAS2R40 Missense_Mutation p.L83I 0.07 tolerated(0.42) benign(0.081) TCGA-OR-A5J8-01 7 143826247 143826247 G A OR2A14 Silent p.P14P 0.30 TCGA-OR-A5J8-01 7 143826338 143826338 T G OR2A14 Missense_Mutation p.F45V 0.10 deleterious(0.04) benign(0.002) TCGA-OR-A5J8-01 7 19738103 19738103 G T TWISTNB Missense_Mutation p.Q285K 0.06 tolerated(0.26) benign(0.001) TCGA-OR-A5J8-01 7 23296587 23296587 C T GPNMB Silent p.T148T 0.42 TCGA-OR-A5J8-01 7 47930172 47930172 C A PKD1L1 Silent p.V881V 0.07 TCGA-OR-A5J8-01 7 55270380 55270380 C G EGFR Intron 0.09 TCGA-OR-A5J8-01 7 77579101 77579101 C A PHTF2 Nonsense_Mutation p.S655* 0.06 TCGA-OR-A5J8-01 7 98256610 98256610 G A NPTX2 Nonsense_Mutation p.W341* 0.09 TCGA-OR-A5J8-01 8 133816893 133816893 T G PHF20L1 Missense_Mutation p.F252C 0.03 tolerated_low_confidence(0.15) benign(0.159) TCGA-OR-A5J8-01 8 139609190 139609190 G T COL22A1 Silent p.T1463T 0.19 TCGA-OR-A5J8-01 9 136518101 136518101 G T DBH Missense_Mutation p.D472Y 0.09 deleterious(0) probably_damaging(0.981) TCGA-OR-A5J8-01 9 138517976 138517976 G T GLT6D1 Missense_Mutation p.L66M 0.39 deleterious(0) probably_damaging(0.998) TCGA-OR-A5J8-01 9 40702725 40702725 G T SPATA31A3 Nonsense_Mutation p.E128* 0.06 TCGA-OR-A5J8-01 9 71144590 71144590 C A PGM5 3'UTR 0.18 TCGA-OR-A5J8-01 9 88918065 88918065 C A ZCCHC6 Missense_Mutation p.D1344Y 0.08 deleterious(0) possibly_damaging(0.894) TCGA-OR-A5J8-01 9 96025908 96025908 T C WNK2 Silent p.F1157F 0.13 TCGA-OR-A5J8-01 X 117527134 117527134 C G WDR44 Missense_Mutation p.F242L 0.09 tolerated_low_confidence(0.66) benign(0) TCGA-OR-A5J8-01 X 15706870 15706870 G T CA5BP1 RNA 0.13 TCGA-OR-A5J8-01 X 20044071 20044071 C A MAP7D2 Splice_Site p.X336_splice 0.24 TCGA-OR-A5J8-01 X 35993875 35993875 C A CXorf22 Missense_Mutation p.S853Y 0.12 tolerated(0.07) benign(0.087) TCGA-OR-A5J8-01 X 37699779 37699779 C A DYNLT3 3'UTR 0.63 TCGA-OR-A5J8-01 X 51079158 51079158 G T NUDT10 3'UTR 0.11 TCGA-OR-A5J8-01 X 51150072 51150072 C T CXorf67 Silent p.S68S 0.20 TCGA-OR-A5J9-01 12 56075586 56075586 C T METTL7B Silent p.T16T 0.08 TCGA-OR-A5J9-01 12 93792979 93792979 G C NUDT4 Missense_Mutation p.E124Q 0.25 tolerated(0.07) possibly_damaging(0.493) TCGA-OR-A5J9-01 13 103382007 103382007 G C CCDC168 Missense_Mutation p.P2385A 0.17 deleterious(0) unknown(0) TCGA-OR-A5J9-01 13 111276578 111276578 T G CARKD Intron 0.22 TCGA-OR-A5J9-01 15 41680715 41680715 A T NDUFAF1 Silent p.P255P 0.17 TCGA-OR-A5J9-01 16 58031921 58031921 G A ZNF319 Silent p.H83H 0.32 TCGA-OR-A5J9-01 16 70891677 70891677 C G HYDIN Missense_Mutation p.V4076L 0.15 possibly_damaging(0.621) TCGA-OR-A5J9-01 17 1640812 1640812 G A WDR81 Missense_Mutation p.V1887M 0.40 deleterious(0.01) probably_damaging(0.928) TCGA-OR-A5J9-01 19 11277179 11277179 A G KANK2 3'UTR 0.16 TCGA-OR-A5J9-01 19 16860082 16860082 G A NWD1 Missense_Mutation p.R210Q 0.26 tolerated(0.36) benign(0.222) TCGA-OR-A5J9-01 19 34929551 34929551 G C UBA2 Missense_Mutation p.G154A 0.26 deleterious(0.01) possibly_damaging(0.854) TCGA-OR-A5J9-01 19 35551399 35551399 C T HPN Silent p.A201A 0.19 TCGA-OR-A5J9-01 19 37677163 37677163 T A ZNF585B Missense_Mutation p.I426F 0.26 tolerated(0.11) possibly_damaging(0.627) TCGA-OR-A5J9-01 19 50156834 50156834 C G SCAF1 Missense_Mutation p.S1063C 0.16 unknown(0) TCGA-OR-A5J9-01 19 53761677 53761677 A G VN1R2 Missense_Mutation p.I17V 0.24 benign(0.035) TCGA-OR-A5J9-01 19 5951537 5951537 T A RANBP3 Missense_Mutation p.H50L 0.18 deleterious_low_confidence(0.01) benign(0.081) TCGA-OR-A5J9-01 1 176525604 176525604 G A PAPPA2 Missense_Mutation p.R49H 0.34 tolerated_low_confidence(0.75) benign(0.001) TCGA-OR-A5J9-01 1 4772335 4772335 G A AJAP1 Silent p.S135S 0.50 TCGA-OR-A5J9-01 1 78414343 78414343 A - FUBP1 3'UTR 0.28 TCGA-OR-A5J9-01 20 31372582 31372582 G T DNMT3B Missense_Mutation p.D75Y 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-OR-A5J9-01 20 43623747 43623747 G A STK4 Missense_Mutation p.R181Q 0.32 deleterious(0) probably_damaging(0.921) TCGA-OR-A5J9-01 2 21224859 21224859 T - APOB Frame_Shift_Del p.S4479Afs*9 0.21 TCGA-OR-A5J9-01 2 215914356 215914356 G C ABCA12 Missense_Mutation p.F229L 0.36 tolerated(1) benign(0.001) TCGA-OR-A5J9-01 2 238729832 238729832 G A RBM44 Missense_Mutation p.E679K 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5J9-01 3 107096799 107096799 C T CCDC54 Missense_Mutation p.T122M 0.43 tolerated(0.31) possibly_damaging(0.497) TCGA-OR-A5J9-01 3 167051700 167051700 G T ZBBX Missense_Mutation p.P201H 0.50 deleterious(0) possibly_damaging(0.788) TCGA-OR-A5J9-01 4 144135926 144135926 A G USP38 Missense_Mutation p.T933A 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5J9-01 5 23509687 23509687 G A PRDM9 Missense_Mutation p.A60T 0.27 tolerated_low_confidence(0.36) benign(0.089) TCGA-OR-A5J9-01 5 35667294 35667294 G A SPEF2 Missense_Mutation p.A430T 0.21 tolerated(0.63) benign(0.007) TCGA-OR-A5J9-01 5 73931914 73931914 G A ENC1 Missense_Mutation p.R133W 0.22 deleterious(0) probably_damaging(0.998) TCGA-OR-A5J9-01 5 85583578 85583578 C G NBPF22P RNA 0.29 TCGA-OR-A5J9-01 6 32137041 32137041 C G AGPAT1 3'UTR 0.37 TCGA-OR-A5J9-01 6 49753750 49753750 T G PGK2 Missense_Mutation p.N384T 0.47 deleterious(0.01) benign(0.261) TCGA-OR-A5J9-01 7 117149172 117149172 C G CFTR Missense_Mutation p.F83L 0.35 tolerated(0.3) benign(0.007) TCGA-OR-A5J9-01 7 2946306 2946306 C T CARD11 Missense_Mutation p.R1144H 0.42 tolerated(0.13) benign(0.008) TCGA-OR-A5J9-01 7 75024676 75024676 C T TRIM73 5'Flank 0.31 TCGA-OR-A5J9-01 8 120594822 120594822 C G ENPP2 Missense_Mutation p.A574P 0.27 deleterious(0) possibly_damaging(0.896) TCGA-OR-A5J9-01 8 37686420 37686420 A G GPR124 Missense_Mutation p.N118S 0.17 deleterious(0) probably_damaging(0.932) TCGA-OR-A5J9-01 8 6302794 6302794 C T MCPH1 Silent p.D517D 0.04 TCGA-OR-A5J9-01 9 5055714 5055714 A G JAK2 Missense_Mutation p.I328V 0.47 tolerated(0.06) benign(0.005) TCGA-OR-A5J9-01 X 114347709 114347709 C T LRCH2 3'UTR 0.50 TCGA-OR-A5J9-01 X 12736016 12736016 C A FRMPD4 Missense_Mutation p.T1024N 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-OR-A5J9-01 X 84520165 84520165 C T ZNF711 Missense_Mutation p.H274Y 0.05 deleterious(0.01) possibly_damaging(0.781) TCGA-OR-A5JA-01 10 104638614 104638614 C A AS3MT Missense_Mutation p.R251S 0.18 tolerated(0.23) benign(0.029) TCGA-OR-A5JA-01 10 118101581 118101581 G T CCDC172 Missense_Mutation p.D106Y 0.08 deleterious(0) possibly_damaging(0.641) TCGA-OR-A5JA-01 10 12148305 12148305 G T DHTKD1 Nonsense_Mutation p.E653* 0.46 TCGA-OR-A5JA-01 10 123846988 123846988 G T TACC2 Missense_Mutation p.G1658V 0.22 benign(0.424) TCGA-OR-A5JA-01 10 129903482 129903482 C A MKI67 Missense_Mutation p.D2208Y 0.43 deleterious(0.02) benign(0.36) TCGA-OR-A5JA-01 10 21962834 21962834 C A MLLT10 Missense_Mutation p.S536Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JA-01 10 22618192 22618192 G T BMI1 Missense_Mutation p.M234I 0.30 tolerated(0.17) benign(0.001) TCGA-OR-A5JA-01 10 25839971 25839971 G T GPR158 Missense_Mutation p.G491C 0.17 deleterious(0) probably_damaging(0.996) TCGA-OR-A5JA-01 10 29818653 29818653 C A SVIL Nonsense_Mutation p.E743* 0.39 TCGA-OR-A5JA-01 10 35897531 35897531 G T GJD4 Missense_Mutation p.A364S 0.06 tolerated(1) benign(0.001) TCGA-OR-A5JA-01 10 37520458 37520458 C A ANKRD30A 3'UTR 0.43 TCGA-OR-A5JA-01 10 43292520 43292520 G T BMS1 Nonsense_Mutation p.E610* 0.05 TCGA-OR-A5JA-01 10 50531426 50531426 C A C10orf71 Nonsense_Mutation p.S279* 0.29 TCGA-OR-A5JA-01 10 51464918 51464918 C A AGAP7 Missense_Mutation p.G513V 0.16 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 10 54076186 54076186 C A DKK1 Missense_Mutation p.H180N 0.05 tolerated(0.41) benign(0.4) TCGA-OR-A5JA-01 10 63845627 63845627 G T ARID5B Nonsense_Mutation p.E456* 0.53 TCGA-OR-A5JA-01 10 7214601 7214601 C A SFMBT2 Missense_Mutation p.K669N 0.42 deleterious(0) possibly_damaging(0.511) TCGA-OR-A5JA-01 10 72538285 72538285 C A TBATA Intron 0.18 TCGA-OR-A5JA-01 10 75528805 75528805 C A SEC24C Missense_Mutation p.S773R 0.46 deleterious(0) probably_damaging(0.98) TCGA-OR-A5JA-01 10 78761184 78761184 G T KCNMA1 Intron 0.12 TCGA-OR-A5JA-01 10 8115981 8115981 G T GATA3 Missense_Mutation p.G444C 0.39 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 10 81850761 81850761 A G TMEM254 3'UTR 0.67 TCGA-OR-A5JA-01 10 99126277 99126277 C A RRP12 Missense_Mutation p.R1106L 0.17 tolerated(0.12) benign(0.002) TCGA-OR-A5JA-01 11 108380726 108380726 C A EXPH5 Silent p.G1836G 0.48 TCGA-OR-A5JA-01 11 123886949 123886949 C A OR10G4 Missense_Mutation p.S223Y 0.43 deleterious(0) probably_damaging(0.971) TCGA-OR-A5JA-01 11 1262202 1262202 G T MUC5B Silent p.L1364L 0.23 TCGA-OR-A5JA-01 11 129306690 129306690 C A BARX2 Missense_Mutation p.R78S 0.08 tolerated(0.19) possibly_damaging(0.654) TCGA-OR-A5JA-01 11 130275863 130275863 C A ADAMTS8 Nonsense_Mutation p.E754* 0.49 TCGA-OR-A5JA-01 11 14865507 14865507 G T PDE3B Missense_Mutation p.A819S 0.87 deleterious(0.01) probably_damaging(1) TCGA-OR-A5JA-01 11 18636678 18636678 C A SPTY2D1 Missense_Mutation p.Q381H 0.18 deleterious(0.05) benign(0.022) TCGA-OR-A5JA-01 11 20907034 20907034 C A NELL1 Missense_Mutation p.P184Q 0.46 tolerated(0.32) benign(0.353) TCGA-OR-A5JA-01 11 2356777 2356777 C A CD81-AS1 Intron 0.92 TCGA-OR-A5JA-01 11 24518704 24518704 G A LUZP2 5'Flank 0.07 TCGA-OR-A5JA-01 11 24784833 24784833 G A LUZP2 Missense_Mutation p.M125I 0.18 tolerated(0.31) probably_damaging(0.946) TCGA-OR-A5JA-01 11 30930510 30930510 C A DCDC1 Nonsense_Mutation p.E1301* 0.12 TCGA-OR-A5JA-01 11 32739646 32739646 C A CCDC73 Missense_Mutation p.E61D 0.67 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 11 36597790 36597790 C A RAG1 Missense_Mutation p.A979D 0.89 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-OR-A5JA-01 11 46397072 46397072 G T DGKZ Missense_Mutation p.D789Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 11 48267186 48267186 C A OR4X2 Silent p.L177L 0.52 TCGA-OR-A5JA-01 11 4945010 4945010 A G OR51G1 Missense_Mutation p.M187T 0.18 deleterious(0) probably_damaging(0.975) TCGA-OR-A5JA-01 11 5475467 5475467 C A OR51I2 Missense_Mutation p.A250E 0.16 deleterious(0) possibly_damaging(0.887) TCGA-OR-A5JA-01 11 55110948 55110948 C T OR4A16 Missense_Mutation p.S91F 0.12 deleterious_low_confidence(0.01) benign(0.295) TCGA-OR-A5JA-01 11 5530029 5530029 G T UBQLN3 Missense_Mutation p.L254I 0.04 deleterious(0) benign(0.294) TCGA-OR-A5JA-01 11 56344908 56344908 C A OR5M10 Missense_Mutation p.C97F 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5JA-01 11 57087809 57087809 C A TNKS1BP1 Missense_Mutation p.A158S 0.51 deleterious(0.04) benign(0.046) TCGA-OR-A5JA-01 11 58206901 58206901 G T OR5B12 Missense_Mutation p.H242N 0.39 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OR-A5JA-01 11 61404570 61404570 C A RPLP0P2 RNA 0.22 TCGA-OR-A5JA-01 11 64574692 64574692 C A MEN1 Splice_Site p.X267_splice 0.41 TCGA-OR-A5JA-01 11 66001334 66001334 C A PACS1 Silent p.L639L 0.53 TCGA-OR-A5JA-01 11 66083700 66083700 C A CD248 Missense_Mutation p.D267Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 11 67167109 67167110 CA - PPP1CA Frame_Shift_Del p.W160Efs*5 0.12 TCGA-OR-A5JA-01 11 7111705 7111705 C A RBMXL2 3'UTR 0.17 TCGA-OR-A5JA-01 11 71184625 71184625 G T NADSYN1 Missense_Mutation p.D187Y 0.48 tolerated(0.07) possibly_damaging(0.748) TCGA-OR-A5JA-01 11 74546991 74546991 C A RNF169 Nonsense_Mutation p.S448* 0.22 TCGA-OR-A5JA-01 11 799871 799871 C A PIDD Silent p.V806V 0.17 TCGA-OR-A5JA-01 11 86152306 86152306 G T ME3 3'UTR 0.16 TCGA-OR-A5JA-01 11 9005245 9005245 G T NRIP3 Intron 0.21 TCGA-OR-A5JA-01 12 100043268 100043268 C A FAM71C 3'UTR 0.11 TCGA-OR-A5JA-01 12 10365807 10365807 G T GABARAPL1 Missense_Mutation p.D27Y 0.26 deleterious(0) probably_damaging(0.976) TCGA-OR-A5JA-01 12 10777358 10777358 G T STYK1 Missense_Mutation p.A273D 0.24 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 12 108133237 108133237 C A PRDM4 Missense_Mutation p.K672N 0.12 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JA-01 12 108931880 108931880 C G SART3 Missense_Mutation p.A388P 0.24 deleterious(0.01) probably_damaging(1) TCGA-OR-A5JA-01 12 109660636 109660636 G T ACACB Missense_Mutation p.E1237D 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-OR-A5JA-01 12 110230204 110230204 G T TRPV4 Missense_Mutation p.L619I 0.23 tolerated(0.07) probably_damaging(0.992) TCGA-OR-A5JA-01 12 111098996 111098996 C A HVCN1 Missense_Mutation p.R93S 0.28 deleterious(0.02) possibly_damaging(0.543) TCGA-OR-A5JA-01 12 117013934 117013934 C A MAP1LC3B2 Missense_Mutation p.L63I 0.30 tolerated(0.06) possibly_damaging(0.6) TCGA-OR-A5JA-01 12 120567240 120567240 G T GCN1L1 Missense_Mutation p.A2577E 0.12 possibly_damaging(0.886) TCGA-OR-A5JA-01 12 124256213 124256213 G T DNAH10 Missense_Mutation p.D61Y 0.11 benign(0.189) TCGA-OR-A5JA-01 12 124317840 124317840 G T DNAH10 Silent p.L1457L 0.21 TCGA-OR-A5JA-01 12 124399087 124399087 G T DNAH10 Nonsense_Mutation p.E3404* 0.17 TCGA-OR-A5JA-01 12 124498445 124498445 C A ZNF664 3'UTR 0.23 TCGA-OR-A5JA-01 12 125448959 125448959 C A DHX37 Nonsense_Mutation p.E676* 0.06 TCGA-OR-A5JA-01 12 129028583 129028583 C A TMEM132C Silent p.G352G 0.42 TCGA-OR-A5JA-01 12 129559056 129559056 G T TMEM132D Missense_Mutation p.F888L 0.40 tolerated(0.06) benign(0.043) TCGA-OR-A5JA-01 12 13102863 13102863 C A GPRC5D Missense_Mutation p.M152I 0.14 tolerated(0.33) benign(0.17) TCGA-OR-A5JA-01 12 132599038 132599038 G T EP400NL Nonstop_Mutation p.*346Lext*3 0.38 TCGA-OR-A5JA-01 12 19475524 19475524 C A PLEKHA5 Missense_Mutation p.Q791K 0.10 deleterious(0.02) probably_damaging(0.983) TCGA-OR-A5JA-01 12 27066421 27066421 C A ASUN Nonsense_Mutation p.E592* 0.28 TCGA-OR-A5JA-01 12 27933962 27933962 C A KLHL42 Silent p.A233A 0.24 TCGA-OR-A5JA-01 12 41967754 41967754 G T PDZRN4 3'UTR 0.13 TCGA-OR-A5JA-01 12 49075169 49075169 C A KANSL2 Missense_Mutation p.D83Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-OR-A5JA-01 12 49254807 49254807 C A RND1 Missense_Mutation p.Q142H 0.12 tolerated(0.37) possibly_damaging(0.638) TCGA-OR-A5JA-01 12 50471033 50471033 C A ASIC1 Nonsense_Mutation p.S199* 0.12 TCGA-OR-A5JA-01 12 518549 518549 C A CCDC77 5'UTR 0.12 TCGA-OR-A5JA-01 12 52967318 52967318 C A KRT74 Nonsense_Mutation p.G82* 0.06 TCGA-OR-A5JA-01 12 52992834 52992834 C A KRT72 Silent p.L163L 0.25 TCGA-OR-A5JA-01 12 53189266 53189266 G T KRT3 Silent p.I187I 0.11 TCGA-OR-A5JA-01 12 54756471 54756471 G T GPR84 Missense_Mutation p.P389T 0.14 tolerated(0.38) benign(0.005) TCGA-OR-A5JA-01 12 55025610 55025610 C A LACRT Missense_Mutation p.E89D 0.12 tolerated_low_confidence(0.1) unknown(0) TCGA-OR-A5JA-01 12 56522216 56522216 C A ESYT1 Missense_Mutation p.S38Y 0.24 deleterious(0.02) possibly_damaging(0.701) TCGA-OR-A5JA-01 12 56716450 56716450 G T PAN2 Silent p.G866G 0.24 TCGA-OR-A5JA-01 12 56845152 56845152 G T MIP Missense_Mutation p.S235Y 0.10 deleterious(0) possibly_damaging(0.515) TCGA-OR-A5JA-01 12 5685071 5685071 G T ANO2 Missense_Mutation p.F850L 0.09 deleterious(0) probably_damaging(0.994) TCGA-OR-A5JA-01 12 6805620 6805620 G T PIANP Silent p.I198I 0.10 TCGA-OR-A5JA-01 12 72017939 72017939 C A ZFC3H1 Missense_Mutation p.R1484I 0.35 deleterious(0) probably_damaging(0.919) TCGA-OR-A5JA-01 12 74933179 74933179 G T ATXN7L3B 3'UTR 0.22 TCGA-OR-A5JA-01 12 75804245 75804245 G T GLIPR1L2 Missense_Mutation p.R89I 0.24 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JA-01 12 77209691 77209691 C A ZDHHC17 Missense_Mutation p.D221E 0.10 deleterious(0) probably_damaging(0.982) TCGA-OR-A5JA-01 12 78225136 78225136 C A NAV3 5'UTR 0.40 TCGA-OR-A5JA-01 12 9085175 9085175 C A PHC1 Silent p.I374I 0.06 TCGA-OR-A5JA-01 12 91545457 91545457 C A DCN Missense_Mutation p.G287W 0.10 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 12 91546934 91546934 C A DCN Missense_Mutation p.D229Y 0.11 deleterious(0) possibly_damaging(0.872) TCGA-OR-A5JA-01 12 93149662 93149662 G T PLEKHG7 Missense_Mutation p.E184D 0.34 tolerated(0.17) benign(0.009) TCGA-OR-A5JA-01 12 95424360 95424360 C A NR2C1 Intron 0.22 TCGA-OR-A5JA-01 12 95434275 95434275 C A NR2C1 Silent p.S410S 0.10 TCGA-OR-A5JA-01 12 95911959 95911959 C T USP44 Missense_Mutation p.D704N 0.17 tolerated_low_confidence(0.06) benign(0.008) TCGA-OR-A5JA-01 13 113909353 113909353 G T CUL4A Nonsense_Mutation p.E649* 0.34 TCGA-OR-A5JA-01 13 25016806 25016806 C A PARP4 Missense_Mutation p.L1155F 0.05 deleterious(0) possibly_damaging(0.729) TCGA-OR-A5JA-01 13 26411330 26411330 G T ATP8A2 Silent p.L928L 0.24 TCGA-OR-A5JA-01 13 31843387 31843387 C A B3GALTL Silent p.S211S 0.97 TCGA-OR-A5JA-01 13 33316808 33316808 G T PDS5B Missense_Mutation p.R852I 0.44 deleterious(0) benign(0.39) TCGA-OR-A5JA-01 13 52604696 52604696 G T UTP14C Nonsense_Mutation p.E586* 0.38 TCGA-OR-A5JA-01 13 52951587 52951587 C A THSD1 Nonsense_Mutation p.E840* 0.12 TCGA-OR-A5JA-01 13 67800034 67800034 C A PCDH9 Missense_Mutation p.A847S 0.22 tolerated(0.35) benign(0.264) TCGA-OR-A5JA-01 13 99947317 99947317 C G GPR183 Missense_Mutation p.K361N 0.32 deleterious_low_confidence(0.01) benign(0.179) TCGA-OR-A5JA-01 14 101011394 101011394 G T BEGAIN Missense_Mutation p.S62R 0.08 deleterious(0) benign(0.156) TCGA-OR-A5JA-01 14 102551693 102551693 C A HSP90AA1 Missense_Mutation p.R324I 0.30 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-OR-A5JA-01 14 105222044 105222044 C A SIVA1 Missense_Mutation p.H66N 0.31 tolerated(0.47) benign(0.004) TCGA-OR-A5JA-01 14 105688210 105688210 C A BRF1 Missense_Mutation p.D364Y 0.05 deleterious(0) benign(0.064) TCGA-OR-A5JA-01 14 106452819 106452819 C A IGHV1-2 Missense_Mutation p.G68V 0.42 deleterious(0.02) probably_damaging(0.93) TCGA-OR-A5JA-01 14 20443680 20443680 G T OR4K15 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) benign(0) TCGA-OR-A5JA-01 14 21052641 21052641 G T RNASE11 Missense_Mutation p.T49K 0.38 tolerated_low_confidence(0.29) possibly_damaging(0.617) TCGA-OR-A5JA-01 14 23521682 23521682 C A CDH24 Missense_Mutation p.G455C 0.10 tolerated(0.07) possibly_damaging(0.662) TCGA-OR-A5JA-01 14 23791464 23791464 G A PABPN1 Silent p.E142E 0.20 TCGA-OR-A5JA-01 14 24731331 24731331 G T TGM1 Silent p.G76G 0.27 TCGA-OR-A5JA-01 14 24901482 24901482 C A KHNYN Silent p.R339R 0.08 TCGA-OR-A5JA-01 14 33291762 33291762 C A AKAP6 Silent p.G1581G 0.27 TCGA-OR-A5JA-01 14 36191028 36191028 G T RALGAPA1 Nonsense_Mutation p.S711* 0.20 TCGA-OR-A5JA-01 14 52508850 52508850 C A NID2 Missense_Mutation p.G600C 0.17 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 14 53110333 53110333 C A ERO1L Silent p.V454V 0.21 TCGA-OR-A5JA-01 14 53386013 53386013 C A FERMT2 Silent p.L73L 0.35 TCGA-OR-A5JA-01 14 56755230 56755230 G T PELI2 Missense_Mutation p.A129S 0.16 tolerated(0.59) benign(0.004) TCGA-OR-A5JA-01 14 57103241 57103241 C A TMEM260 Missense_Mutation p.F598L 0.11 deleterious(0) probably_damaging(0.985) TCGA-OR-A5JA-01 14 62567455 62567455 C A SYT16 3'UTR 0.32 TCGA-OR-A5JA-01 14 64580141 64580141 G T SYNE2 Missense_Mutation p.R4231M 0.27 possibly_damaging(0.849) TCGA-OR-A5JA-01 14 75359678 75359678 C A DLST Missense_Mutation p.S195Y 0.13 deleterious(0.01) benign(0.058) TCGA-OR-A5JA-01 14 94759308 94759308 C A SERPINA10 5'UTR 0.21 TCGA-OR-A5JA-01 15 25200114 25200114 G A SNRPN Intron 0.15 TCGA-OR-A5JA-01 15 28441707 28441707 C A HERC2 Missense_Mutation p.A2674S 0.24 benign(0.132) TCGA-OR-A5JA-01 15 30018654 30018654 C A TJP1 Missense_Mutation p.G781C 0.12 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JA-01 15 31217483 31217483 G T FAN1 Missense_Mutation p.D776Y 0.22 deleterious(0) probably_damaging(0.982) TCGA-OR-A5JA-01 15 31342674 31342674 C A TRPM1 Missense_Mutation p.G476W 0.21 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 15 34517318 34517318 G T EMC4 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0) benign(0.107) TCGA-OR-A5JA-01 15 38762452 38762452 C A FAM98B Missense_Mutation p.A126D 0.04 deleterious(0) probably_damaging(0.993) TCGA-OR-A5JA-01 15 38808534 38808534 G T RASGRP1 Missense_Mutation p.S180Y 0.14 tolerated(0.05) probably_damaging(0.921) TCGA-OR-A5JA-01 15 40398042 40398042 G T BMF Silent p.V82V 0.22 TCGA-OR-A5JA-01 15 41523643 41523643 C A CHP1 Silent p.T21T 0.28 TCGA-OR-A5JA-01 15 41861213 41861213 C A TYRO3 Missense_Mutation p.D415E 0.09 tolerated(0.68) benign(0.008) TCGA-OR-A5JA-01 15 54825158 54825158 G T UNC13C Nonsense_Mutation p.E1864* 0.29 TCGA-OR-A5JA-01 15 57731629 57731629 G T CGNL1 Nonsense_Mutation p.E478* 0.14 TCGA-OR-A5JA-01 15 63017258 63017258 G T TLN2 Missense_Mutation p.K1070N 0.37 tolerated(0.08) benign(0.078) TCGA-OR-A5JA-01 15 65443246 65443246 G T CLPX Missense_Mutation p.P606Q 0.38 tolerated(0.27) benign(0.005) TCGA-OR-A5JA-01 15 66787699 66787699 G T SNAPC5 Missense_Mutation p.S50Y 0.30 tolerated_low_confidence(0.17) probably_damaging(0.965) TCGA-OR-A5JA-01 15 73994904 73994904 G T CD276 Missense_Mutation p.G130C 0.10 deleterious(0.02) possibly_damaging(0.855) TCGA-OR-A5JA-01 15 75091628 75091628 G T CSK Missense_Mutation p.K86N 0.32 tolerated(0.07) possibly_damaging(0.678) TCGA-OR-A5JA-01 15 75890858 75890858 C A SNUPN Missense_Mutation p.Q308H 0.09 deleterious(0) possibly_damaging(0.566) TCGA-OR-A5JA-01 15 78732221 78732221 A G IREB2 Missense_Mutation p.Y35C 0.06 deleterious(0.01) probably_damaging(0.925) TCGA-OR-A5JA-01 15 79587843 79587843 G T ANKRD34C 3'UTR 0.08 TCGA-OR-A5JA-01 15 81295513 81295513 C A MESDC1 Missense_Mutation p.L301I 0.35 tolerated(0.23) possibly_damaging(0.805) TCGA-OR-A5JA-01 15 86806035 86806035 C A AGBL1 Missense_Mutation p.N286K 0.15 tolerated(0.07) benign(0.017) TCGA-OR-A5JA-01 16 11940360 11940360 G T RSL1D1 Nonsense_Mutation p.C211* 0.23 TCGA-OR-A5JA-01 16 15102644 15102644 G T PDXDC1 Missense_Mutation p.L196F 0.13 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 16 1537885 1537885 G T PTX4 Missense_Mutation p.F71L 0.13 deleterious(0.04) benign(0.272) TCGA-OR-A5JA-01 16 18586363 18586363 C A RP11-457I16.2 5'Flank 0.12 TCGA-OR-A5JA-01 16 20787314 20787314 C A ACSM3 Missense_Mutation p.L125M 0.09 tolerated(0.07) possibly_damaging(0.766) TCGA-OR-A5JA-01 16 23491135 23491135 C A GGA2 Missense_Mutation p.Q360H 0.21 tolerated(0.25) benign(0.002) TCGA-OR-A5JA-01 16 27454345 27454345 C A IL21R Missense_Mutation p.R139S 0.22 tolerated(0.85) benign(0.01) TCGA-OR-A5JA-01 16 29918291 29918291 C A KCTD13 Nonsense_Mutation p.E298* 0.14 TCGA-OR-A5JA-01 16 30535865 30535865 C A ZNF768 Missense_Mutation p.Q532H 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.836) TCGA-OR-A5JA-01 16 30770910 30770910 G T C16orf93 Intron 0.30 TCGA-OR-A5JA-01 16 31044428 31044428 G T STX4 5'Flank 0.09 TCGA-OR-A5JA-01 16 31336693 31336693 G T ITGAM Missense_Mutation p.D826Y 0.43 deleterious(0) benign(0.353) TCGA-OR-A5JA-01 16 3843582 3843582 C A CREBBP Missense_Mutation p.A341S 0.29 benign(0.056) TCGA-OR-A5JA-01 16 47699850 47699850 C A PHKB Intron 0.20 TCGA-OR-A5JA-01 16 57732903 57732903 C A CCDC135 Silent p.L115L 0.09 TCGA-OR-A5JA-01 16 57935280 57935280 C A CNGB1 Silent p.L984L 0.10 TCGA-OR-A5JA-01 16 58314690 58314690 C A CCDC113 3'UTR 0.25 TCGA-OR-A5JA-01 16 67241849 67241849 A T LRRC29 Missense_Mutation p.W144R 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-OR-A5JA-01 16 67333415 67333415 G T KCTD19 Missense_Mutation p.S279R 0.10 tolerated(0.23) benign(0.018) TCGA-OR-A5JA-01 16 74670456 74670456 G T RFWD3 Nonsense_Mutation p.S405* 0.22 TCGA-OR-A5JA-01 16 778414 778414 C A HAGHL Silent p.A129A 0.30 TCGA-OR-A5JA-01 16 86601196 86601196 C A FOXC2 Silent p.I85I 0.31 TCGA-OR-A5JA-01 17 12853032 12853032 G T ARHGAP44 Missense_Mutation p.W347L 0.07 deleterious(0) possibly_damaging(0.897) TCGA-OR-A5JA-01 17 18328133 18328133 C T AL353997.3 RNA 0.22 TCGA-OR-A5JA-01 17 20841453 20841453 A T RP11-381P6.1 5'Flank 0.08 TCGA-OR-A5JA-01 17 21215491 21215491 G T MAP2K3 Missense_Mutation p.W271L 0.08 deleterious(0) benign(0.445) TCGA-OR-A5JA-01 17 28601155 28601155 G A BLMH Nonsense_Mutation p.R236* 0.20 TCGA-OR-A5JA-01 17 29848225 29848225 C A RAB11FIP4 Missense_Mutation p.S202Y 0.09 tolerated(0.21) possibly_damaging(0.883) TCGA-OR-A5JA-01 17 29848320 29848320 C A RAB11FIP4 Missense_Mutation p.P234T 0.45 deleterious(0.02) probably_damaging(0.992) TCGA-OR-A5JA-01 17 32687489 32687489 G T CCL1 3'UTR 0.56 TCGA-OR-A5JA-01 17 34072812 34072812 G T GAS2L2 Silent p.V568V 0.10 TCGA-OR-A5JA-01 17 35468526 35468526 C A ACACA Missense_Mutation p.D2169Y 0.10 deleterious(0) probably_damaging(0.974) TCGA-OR-A5JA-01 17 39140279 39140279 C A KRT40 Missense_Mutation p.G83W 0.43 deleterious(0) benign(0.142) TCGA-OR-A5JA-01 17 39190809 39190809 C A KRTAP1-3 Missense_Mutation p.G89C 0.30 tolerated(0.4) unknown(0) TCGA-OR-A5JA-01 17 41180515 41180515 C A RND2 Missense_Mutation p.R168S 0.08 tolerated(0.2) benign(0.156) TCGA-OR-A5JA-01 17 43322367 43322367 G T FMNL1 Missense_Mutation p.D874Y 0.44 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 17 45668234 45668234 G T NPEPPS Missense_Mutation p.S416I 0.07 deleterious(0) probably_damaging(0.986) TCGA-OR-A5JA-01 17 46804087 46804087 G T HOXB13 3'UTR 0.24 TCGA-OR-A5JA-01 17 47007866 47007866 C A SNF8 Missense_Mutation p.A250S 0.28 tolerated(0.37) benign(0.001) TCGA-OR-A5JA-01 17 48050293 48050293 G T DLX4 Intron 0.05 TCGA-OR-A5JA-01 17 4862852 4862852 C A SPAG7 Nonsense_Mutation p.E221* 0.22 TCGA-OR-A5JA-01 17 66526420 66526420 G T PRKAR1A Nonsense_Mutation p.E326* 0.24 TCGA-OR-A5JA-01 17 67515498 67515498 G T MAP2K6 Silent p.L97L 0.47 TCGA-OR-A5JA-01 17 68171641 68171641 G T KCNJ2 Missense_Mutation p.C154F 0.41 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 17 71166384 71166384 C A SSTR2 Missense_Mutation p.P309H 0.40 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 17 73258729 73258729 G T MRPS7 Missense_Mutation p.A79S 0.35 tolerated(0.83) benign(0.01) TCGA-OR-A5JA-01 17 73898152 73898152 G T MRPL38 Missense_Mutation p.Q111K 0.18 tolerated(1) benign(0.001) TCGA-OR-A5JA-01 17 7579521 7579521 C A TP53 Nonsense_Mutation p.E56* 0.36 TCGA-OR-A5JA-01 17 7579722 7579722 C A TP53 Splice_Site p.X25_splice 0.36 TCGA-OR-A5JA-01 17 76202078 76202078 G T AFMID Missense_Mutation p.D283Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JA-01 17 76886822 76886822 C A DDC8 Missense_Mutation p.M588I 0.19 deleterious(0.02) probably_damaging(0.924) TCGA-OR-A5JA-01 17 77984098 77984098 C A TBC1D16 Nonsense_Mutation p.E214* 0.50 TCGA-OR-A5JA-01 18 14748544 14748544 C A ANKRD30B Silent p.I42I 0.65 TCGA-OR-A5JA-01 18 18586509 18586509 C A ROCK1 Missense_Mutation p.R563I 0.15 deleterious(0) probably_damaging(0.984) TCGA-OR-A5JA-01 18 34320707 34320707 C A FHOD3 Missense_Mutation p.A1047E 0.22 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 18 39607392 39607392 C A PIK3C3 Intron 0.31 TCGA-OR-A5JA-01 18 43221304 43221304 C A SLC14A2 Silent p.I374I 0.38 TCGA-OR-A5JA-01 18 47810264 47810264 C A CXXC1 Missense_Mutation p.E475D 0.16 tolerated(0.1) probably_damaging(0.971) TCGA-OR-A5JA-01 18 60036497 60036497 C G TNFRSF11A Missense_Mutation p.C449W 0.87 deleterious(0.01) benign(0.081) TCGA-OR-A5JA-01 18 66505987 66505987 G T CCDC102B Missense_Mutation p.M217I 0.14 tolerated(0.62) benign(0.159) TCGA-OR-A5JA-01 18 73001536 73001536 C A TSHZ1 3'UTR 0.37 TCGA-OR-A5JA-01 18 9399488 9399488 G T TWSG1 Missense_Mutation p.G212V 0.06 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 19 1047284 1047284 C A ABCA7 Silent p.A658A 0.16 TCGA-OR-A5JA-01 19 10503780 10503780 G T CDC37 Silent p.I321I 0.29 TCGA-OR-A5JA-01 19 10574513 10574513 C A PDE4A Silent p.T596T 0.29 TCGA-OR-A5JA-01 19 11657510 11657510 C A CNN1 Missense_Mutation p.P69Q 0.33 deleterious(0.03) probably_damaging(0.994) TCGA-OR-A5JA-01 19 14169968 14169968 C A PALM3 Missense_Mutation p.A2S 0.06 tolerated(0.05) probably_damaging(0.997) TCGA-OR-A5JA-01 19 14815966 14815966 G T ZNF333 Missense_Mutation p.W136L 0.31 tolerated_low_confidence(0.53) benign(0.307) TCGA-OR-A5JA-01 19 15482785 15482785 G T AKAP8 Nonsense_Mutation p.S339* 0.12 TCGA-OR-A5JA-01 19 15507978 15507978 G T AKAP8L Missense_Mutation p.H507N 0.12 deleterious(0) benign(0.157) TCGA-OR-A5JA-01 19 15789193 15789193 C A CYP4F12 Silent p.I107I 0.09 TCGA-OR-A5JA-01 19 17394631 17394631 G T ANKLE1 Missense_Mutation p.C353F 0.14 tolerated(0.15) possibly_damaging(0.547) TCGA-OR-A5JA-01 19 18241370 18241370 G T MAST3 Missense_Mutation p.Q401H 0.11 deleterious(0.03) benign(0.444) TCGA-OR-A5JA-01 19 21324942 21324942 G T ZNF431 5'UTR 0.25 TCGA-OR-A5JA-01 19 22363229 22363229 G T ZNF676 Missense_Mutation p.F430L 0.15 deleterious(0.01) benign(0.261) TCGA-OR-A5JA-01 19 24309378 24309378 C A ZNF254 Nonsense_Mutation p.C192* 0.10 TCGA-OR-A5JA-01 19 2434856 2434856 C T LMNB2 Missense_Mutation p.R304H 0.28 tolerated(0.35) probably_damaging(0.993) TCGA-OR-A5JA-01 19 33696766 33696766 G T LRP3 Missense_Mutation p.V364L 0.07 deleterious(0.01) probably_damaging(0.97) TCGA-OR-A5JA-01 19 35850698 35850698 G T FFAR3 Missense_Mutation p.Q302H 0.11 tolerated(0.34) benign(0.212) TCGA-OR-A5JA-01 19 36831144 36831144 C A ZFP14 Missense_Mutation p.K528N 0.16 deleterious(0.03) possibly_damaging(0.526) TCGA-OR-A5JA-01 19 38378662 38378662 C A WDR87 Missense_Mutation p.K1844N 0.23 benign(0.047) TCGA-OR-A5JA-01 19 41313793 41313793 C A EGLN2 3'UTR 0.16 TCGA-OR-A5JA-01 19 41518259 41518259 C A CYP2B6 Missense_Mutation p.H341N 0.10 tolerated(0.1) benign(0) TCGA-OR-A5JA-01 19 42410903 42410903 G T ARHGEF1 Missense_Mutation p.G917W 0.23 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OR-A5JA-01 19 42907077 42907078 - C LIPE Frame_Shift_Ins p.N884Kfs*16 0.35 TCGA-OR-A5JA-01 19 45822926 45822926 G T CKM Missense_Mutation p.P16T 0.28 tolerated(0.17) benign(0.004) TCGA-OR-A5JA-01 19 46003736 46003736 G T PPM1N Missense_Mutation p.K360N 0.10 tolerated(0.12) benign(0.008) TCGA-OR-A5JA-01 19 4817397 4817397 C A TICAM1 Missense_Mutation p.Q331H 0.44 deleterious(0.04) benign(0.08) TCGA-OR-A5JA-01 19 49227597 49227597 G T RASIP1 Silent p.L847L 0.27 TCGA-OR-A5JA-01 19 51875493 51875493 G T NKG7 Missense_Mutation p.L76M 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5JA-01 19 52888417 52888417 C A ZNF880 Silent p.V528V 0.09 TCGA-OR-A5JA-01 19 53886527 53886527 C A ZNF525 3'UTR 0.31 TCGA-OR-A5JA-01 19 54656063 54656063 G A CNOT3 Splice_Site p.X569_splice 0.13 TCGA-OR-A5JA-01 19 54803031 54803031 C A LILRA3 Missense_Mutation p.G216W 0.12 deleterious(0) possibly_damaging(0.639) TCGA-OR-A5JA-01 19 56024505 56024505 C A SSC5D Silent p.G971G 0.06 TCGA-OR-A5JA-01 19 56154608 56154608 G T ZNF580 3'UTR 0.23 TCGA-OR-A5JA-01 19 56952598 56952598 C A ZNF667 Missense_Mutation p.G589V 0.23 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 19 58004403 58004403 C A ZNF419 Missense_Mutation p.Q161K 0.10 tolerated(0.24) benign(0.275) TCGA-OR-A5JA-01 19 58384936 58384936 C A ZNF814 Nonsense_Mutation p.E608* 0.26 TCGA-OR-A5JA-01 19 58485719 58485719 C A C19orf18 Missense_Mutation p.D28Y 0.23 deleterious(0.03) probably_damaging(0.979) TCGA-OR-A5JA-01 19 58905869 58905869 C A RPS5 Silent p.I151I 0.06 TCGA-OR-A5JA-01 19 59065587 59065587 G T CHMP2A 5'UTR 0.19 TCGA-OR-A5JA-01 19 6393179 6393179 C A GTF2F1 5'UTR 0.33 TCGA-OR-A5JA-01 1 110561730 110561730 G T AHCYL1 Missense_Mutation p.A459S 0.30 tolerated(0.34) possibly_damaging(0.468) TCGA-OR-A5JA-01 1 111862838 111862838 G T CHIA Missense_Mutation p.C394F 0.12 deleterious(0.05) possibly_damaging(0.73) TCGA-OR-A5JA-01 1 11249964 11249964 G T ANGPTL7 Missense_Mutation p.D110Y 0.37 deleterious(0.02) possibly_damaging(0.798) TCGA-OR-A5JA-01 1 114225611 114225611 G T MAGI3 Nonsense_Mutation p.E1141* 0.17 TCGA-OR-A5JA-01 1 119427957 119427957 C A TBX15 Missense_Mutation p.A297S 0.29 tolerated(1) probably_damaging(0.985) TCGA-OR-A5JA-01 1 151735532 151735532 G T MRPL9 Missense_Mutation p.L82M 0.37 deleterious(0.03) possibly_damaging(0.718) TCGA-OR-A5JA-01 1 151787731 151787731 G T RORC Missense_Mutation p.Q157K 0.18 tolerated(0.85) benign(0.186) TCGA-OR-A5JA-01 1 152734424 152734424 C A KPRP 3'UTR 0.06 TCGA-OR-A5JA-01 1 152816014 152816014 G T LCE6A Missense_Mutation p.Q6H 0.15 tolerated(0.08) probably_damaging(0.996) TCGA-OR-A5JA-01 1 153029123 153029123 G T SPRR2A Missense_Mutation p.P30Q 0.13 tolerated_low_confidence(0.19) unknown(0) TCGA-OR-A5JA-01 1 15390118 15390118 G T KAZN Missense_Mutation p.Q366H 0.37 deleterious(0.02) possibly_damaging(0.585) TCGA-OR-A5JA-01 1 154427044 154427044 G T IL6R Missense_Mutation p.A383S 0.11 tolerated(0.06) benign(0.079) TCGA-OR-A5JA-01 1 154841756 154841756 C A KCNN3 Missense_Mutation p.A229S 0.15 tolerated(0.37) benign(0.013) TCGA-OR-A5JA-01 1 155630075 155630075 G T YY1AP1 Silent p.I680I 0.09 TCGA-OR-A5JA-01 1 156841476 156841476 G T NTRK1 Missense_Mutation p.R260M 0.12 tolerated(0.14) possibly_damaging(0.8) TCGA-OR-A5JA-01 1 157665960 157665960 C A FCRL3 Missense_Mutation p.K334N 0.05 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JA-01 1 160681573 160681573 C A CD48 5'UTR 0.13 TCGA-OR-A5JA-01 1 165677840 165677840 C A RP11-466F5.10 5'Flank 0.57 TCGA-OR-A5JA-01 1 183907845 183907845 G T COLGALT2 3'UTR 0.40 TCGA-OR-A5JA-01 1 186050464 186050464 G T HMCN1 Missense_Mutation p.D2909Y 0.30 probably_damaging(0.999) TCGA-OR-A5JA-01 1 186909138 186909138 G T PLA2G4A Missense_Mutation p.L315F 0.09 tolerated(0.18) benign(0.023) TCGA-OR-A5JA-01 1 201193916 201193916 G T IGFN1 Missense_Mutation p.G3467V 0.39 possibly_damaging(0.775) TCGA-OR-A5JA-01 1 201974847 201974847 G T RNPEP 3'UTR 0.09 TCGA-OR-A5JA-01 1 204588338 204588338 G A LRRN2 Silent p.P261P 0.14 TCGA-OR-A5JA-01 1 205070796 205070796 G T RBBP5 Silent p.S188S 0.21 TCGA-OR-A5JA-01 1 205156626 205156626 G T DSTYK Missense_Mutation p.L192M 0.41 tolerated(0.06) probably_damaging(0.927) TCGA-OR-A5JA-01 1 212900522 212900522 C A NSL1 Splice_Site p.X64_splice 0.07 TCGA-OR-A5JA-01 1 226347014 226347014 G T ACBD3 Missense_Mutation p.F258L 0.14 deleterious(0) probably_damaging(0.914) TCGA-OR-A5JA-01 1 232144789 232144789 G T DISC1 Missense_Mutation p.Q767H 0.42 tolerated(0.6) benign(0.054) TCGA-OR-A5JA-01 1 241667408 241667408 C A FH Missense_Mutation p.G348C 0.18 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 1 242042620 242042620 G T EXO1 Missense_Mutation p.C695F 0.23 tolerated(0.7) benign(0.002) TCGA-OR-A5JA-01 1 27995817 27995817 C A IFI6 Missense_Mutation p.Q3H 0.13 deleterious_low_confidence(0) possibly_damaging(0.63) TCGA-OR-A5JA-01 1 36026523 36026523 C A NCDN Nonsense_Mutation p.C257* 0.07 TCGA-OR-A5JA-01 1 42657323 42657323 G T FOXJ3 Silent p.P334P 0.04 TCGA-OR-A5JA-01 1 43055014 43055014 G T CCDC30 Missense_Mutation p.D415Y 0.49 deleterious(0.01) possibly_damaging(0.804) TCGA-OR-A5JA-01 1 44685801 44685801 G T DMAP1 Silent p.L388L 0.07 TCGA-OR-A5JA-01 1 50659584 50659584 G T ELAVL4 Missense_Mutation p.V185F 0.40 tolerated(0.08) benign(0.005) TCGA-OR-A5JA-01 1 66098847 66098847 C A LEPR Intron 0.23 TCGA-OR-A5JA-01 1 67724387 67724387 C A IL23R Nonsense_Mutation p.S489* 0.21 TCGA-OR-A5JA-01 1 78401561 78401561 C A NEXN Silent p.I435I 0.06 TCGA-OR-A5JA-01 1 82409449 82409449 C A LPHN2 Silent p.A398A 0.20 TCGA-OR-A5JA-01 1 8557547 8557547 C A RERE Missense_Mutation p.D308Y 0.42 probably_damaging(0.91) TCGA-OR-A5JA-01 1 85592293 85592293 G A WDR63 Missense_Mutation p.G738R 0.05 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 1 85624414 85624415 - A SYDE2 3'UTR 0.31 TCGA-OR-A5JA-01 1 92187701 92187701 C A TGFBR3 Missense_Mutation p.A296S 0.13 tolerated(0.08) benign(0.244) TCGA-OR-A5JA-01 1 95310885 95310885 G T SLC44A3 Missense_Mutation p.V313F 0.51 deleterious(0) probably_damaging(0.925) TCGA-OR-A5JA-01 20 23584241 23584241 C A CST9 Missense_Mutation p.S129I 0.19 tolerated(0.09) benign(0.267) TCGA-OR-A5JA-01 20 3090889 3090889 C A UBOX5 Nonsense_Mutation p.E497* 0.37 TCGA-OR-A5JA-01 20 32248098 32248098 G T NECAB3 Nonsense_Mutation p.S164* 0.21 TCGA-OR-A5JA-01 20 33328359 33328359 C A NCOA6 Missense_Mutation p.A1901S 0.58 benign(0.008) TCGA-OR-A5JA-01 20 39794149 39794149 C A PLCG1 Silent p.T523T 0.45 TCGA-OR-A5JA-01 20 43956014 43956014 A G SDC4 Missense_Mutation p.F163L 0.52 tolerated(0.42) benign(0.192) TCGA-OR-A5JA-01 20 54961553 54961553 C T AURKA Missense_Mutation p.V27M 0.51 deleterious(0.04) benign(0.286) TCGA-OR-A5JA-01 20 62616311 62616311 G T PRPF6 Missense_Mutation p.D98Y 0.19 deleterious(0) probably_damaging(0.967) TCGA-OR-A5JA-01 20 62737957 62737957 C A NPBWR2 Missense_Mutation p.M76I 0.13 deleterious(0.02) benign(0.266) TCGA-OR-A5JA-01 21 15893519 15893519 G T SAMSN1 Missense_Mutation p.F95L 0.25 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 21 30464777 30464777 C G MAP3K7CL Missense_Mutation p.S82C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-OR-A5JA-01 21 33043911 33043911 T A SCAF4 Missense_Mutation p.E1082V 0.46 unknown(0) TCGA-OR-A5JA-01 21 34011381 34011381 G T SYNJ1 Missense_Mutation p.S1290Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-OR-A5JA-01 22 19511638 19511638 C A CLDN5 Missense_Mutation p.W132C 0.83 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 22 19864620 19864620 G T TXNRD2 3'UTR 0.23 TCGA-OR-A5JA-01 22 21140341 21140341 C A SERPIND1 Missense_Mutation p.L405I 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5JA-01 22 21363364 21363364 C A AC002472.1 5'Flank 0.07 TCGA-OR-A5JA-01 22 23915564 23915564 G T IGLL1 Missense_Mutation p.S177R 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5JA-01 22 24121481 24121481 C A MMP11 Silent p.A72A 0.26 TCGA-OR-A5JA-01 22 26423258 26423258 G T MYO18B Missense_Mutation p.D2440Y 0.50 deleterious(0) probably_damaging(0.937) TCGA-OR-A5JA-01 22 32266663 32266663 C A DEPDC5 Missense_Mutation p.Q1131K 0.42 tolerated(0.18) benign(0.044) TCGA-OR-A5JA-01 22 37397950 37397950 G T TEX33 Silent p.G139G 0.22 TCGA-OR-A5JA-01 22 39811035 39811035 G T TAB1 Missense_Mutation p.D20Y 0.18 deleterious(0) probably_damaging(0.965) TCGA-OR-A5JA-01 22 40657846 40657846 G T TNRC6B Silent p.V42V 0.46 TCGA-OR-A5JA-01 22 40666127 40666127 C A TNRC6B Silent p.V936V 0.43 TCGA-OR-A5JA-01 22 50552817 50552817 G T MOV10L1 Nonsense_Mutation p.G298* 0.58 TCGA-OR-A5JA-01 2 102964457 102964457 G T IL1RL1 Missense_Mutation p.M341I 0.17 tolerated(0.57) benign(0.002) TCGA-OR-A5JA-01 2 105654631 105654631 G T MRPS9 Missense_Mutation p.K27N 0.21 tolerated_low_confidence(0.33) benign(0.002) TCGA-OR-A5JA-01 2 105886085 105886085 G T TGFBRAP1 Missense_Mutation p.H684N 0.55 tolerated(0.1) benign(0.016) TCGA-OR-A5JA-01 2 108609540 108609540 G T SLC5A7 Silent p.L135L 0.46 TCGA-OR-A5JA-01 2 109087646 109087646 G T GCC2 Nonsense_Mutation p.E621* 0.13 TCGA-OR-A5JA-01 2 112740485 112740485 G T MERTK Missense_Mutation p.R404I 0.50 deleterious(0.01) benign(0.265) TCGA-OR-A5JA-01 2 128477187 128477187 G T WDR33 Silent p.G804G 0.14 TCGA-OR-A5JA-01 2 128631584 128631584 G T AMMECR1L Silent p.P75P 0.19 TCGA-OR-A5JA-01 2 130898834 130898834 G T CCDC74B Missense_Mutation p.Q194K 0.40 deleterious(0.05) possibly_damaging(0.491) TCGA-OR-A5JA-01 2 130941446 130941446 C A MZT2B Intron 0.06 TCGA-OR-A5JA-01 2 152127171 152127171 G T NMI 3'UTR 0.21 TCGA-OR-A5JA-01 2 166166936 166166936 G T SCN2A Missense_Mutation p.L267F 0.06 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 2 167129186 167129186 C A SCN9A Missense_Mutation p.R1014I 0.15 tolerated(0.07) benign(0.074) TCGA-OR-A5JA-01 2 173338941 173338941 C A ITGA6 Missense_Mutation p.L312M 0.53 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 2 175427307 175427307 C A WIPF1 Missense_Mutation p.G494C 0.58 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JA-01 2 179477034 179477034 C A TTN Nonsense_Mutation p.E16740* 0.23 TCGA-OR-A5JA-01 2 182360586 182360586 G T ITGA4 Nonsense_Mutation p.E488* 0.04 TCGA-OR-A5JA-01 2 182399023 182399023 G T ITGA4 Nonsense_Mutation p.E937* 0.08 TCGA-OR-A5JA-01 2 185803043 185803043 G T ZNF804A Nonsense_Mutation p.E974* 0.22 TCGA-OR-A5JA-01 2 188250272 188250272 C A CALCRL Missense_Mutation p.M17I 0.47 tolerated(0.29) benign(0.001) TCGA-OR-A5JA-01 2 189917495 189917495 G T COL5A2 Silent p.R899R 0.48 TCGA-OR-A5JA-01 2 197541324 197541324 G T CCDC150 Missense_Mutation p.D437Y 0.42 tolerated(0.08) possibly_damaging(0.491) TCGA-OR-A5JA-01 2 201397779 201397779 G T SGOL2 Missense_Mutation p.K27N 0.39 deleterious(0) probably_damaging(0.978) TCGA-OR-A5JA-01 2 201994606 201994606 C A CFLAR Silent p.I6I 0.52 TCGA-OR-A5JA-01 2 206869265 206869265 G T INO80D Missense_Mutation p.Q971K 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-OR-A5JA-01 2 207174885 207174885 G - ZDBF2 Frame_Shift_Del p.A1879Lfs*35 0.13 TCGA-OR-A5JA-01 2 213403285 213403285 A G ERBB4 5'UTR 0.33 TCGA-OR-A5JA-01 2 218924436 218924436 C A CXCR2P1 RNA 0.53 TCGA-OR-A5JA-01 2 223773830 223773830 G T ACSL3 Nonsense_Mutation p.E114* 0.27 TCGA-OR-A5JA-01 2 228770995 228770995 G A DAW1 Missense_Mutation p.A267T 0.12 tolerated(0.29) benign(0.11) TCGA-OR-A5JA-01 2 231155258 231155258 C A SP140 Missense_Mutation p.H602N 0.18 deleterious(0.02) possibly_damaging(0.811) TCGA-OR-A5JA-01 2 233431658 233431658 G T EIF4E2 Missense_Mutation p.E165D 0.56 deleterious(0.05) benign(0.343) TCGA-OR-A5JA-01 2 234255657 234255657 G T SAG 3'UTR 0.47 TCGA-OR-A5JA-01 2 234344974 234344974 C A DGKD Missense_Mutation p.H236N 0.38 deleterious(0) probably_damaging(0.976) TCGA-OR-A5JA-01 2 234638397 234638397 C A UGT1A3 Missense_Mutation p.Q209K 0.22 deleterious(0) possibly_damaging(0.852) TCGA-OR-A5JA-01 2 234775230 234775230 G T MSL3P1 RNA 0.18 TCGA-OR-A5JA-01 2 238275811 238275811 G A COL6A3 Silent p.G1673G 0.17 TCGA-OR-A5JA-01 2 27290394 27290394 C A AGBL5 Missense_Mutation p.Q708K 0.30 deleterious_low_confidence(0.05) possibly_damaging(0.53) TCGA-OR-A5JA-01 2 36583544 36583544 T G CRIM1 Missense_Mutation p.C37G 0.15 deleterious(0) possibly_damaging(0.599) TCGA-OR-A5JA-01 2 37215999 37215999 G T HEATR5B Missense_Mutation p.Q1901K 0.19 tolerated(0.87) benign(0.037) TCGA-OR-A5JA-01 2 38978461 38978461 G A SRSF7 5'UTR 0.46 TCGA-OR-A5JA-01 2 40657111 40657111 C A SLC8A1 Nonsense_Mutation p.E104* 0.53 TCGA-OR-A5JA-01 2 70188113 70188113 C A ASPRV1 Silent p.L236L 0.16 TCGA-OR-A5JA-01 2 96948949 96948949 G T SNRNP200 Silent p.L1635L 0.34 TCGA-OR-A5JA-01 2 96957486 96957486 C A SNRNP200 Intron 0.28 TCGA-OR-A5JA-01 3 112257000 112257000 G T ATG3 Missense_Mutation p.T168K 0.19 tolerated(0.78) benign(0.024) TCGA-OR-A5JA-01 3 121178920 121178920 C A POLQ Missense_Mutation p.D2377Y 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-OR-A5JA-01 3 121976121 121976121 G T CASR Nonsense_Mutation p.E127* 0.19 TCGA-OR-A5JA-01 3 127800059 127800059 G T RUVBL1 3'UTR 0.10 TCGA-OR-A5JA-01 3 139292460 139292460 G T NMNAT3 Missense_Mutation p.A82E 0.46 tolerated(0.75) benign(0.025) TCGA-OR-A5JA-01 3 142681441 142681441 G T PAQR9 Silent p.V246V 0.15 TCGA-OR-A5JA-01 3 148575243 148575243 G T CPB1 Splice_Site p.X328_splice 0.07 TCGA-OR-A5JA-01 3 150128968 150128968 G T TSC22D2 Nonsense_Mutation p.E611* 0.35 TCGA-OR-A5JA-01 3 157160724 157160724 G T PTX3 Missense_Mutation p.V368F 0.08 deleterious(0.03) possibly_damaging(0.835) TCGA-OR-A5JA-01 3 159605617 159605617 G T IQCJ-SCHIP1 Missense_Mutation p.A449S 0.10 tolerated(0.13) probably_damaging(0.994) TCGA-OR-A5JA-01 3 160804280 160804280 G T B3GALNT1 Missense_Mutation p.P88H 0.48 tolerated(0.28) probably_damaging(0.921) TCGA-OR-A5JA-01 3 167033573 167033573 G T ZBBX Nonsense_Mutation p.Y413* 0.15 TCGA-OR-A5JA-01 3 169514567 169514567 G T LRRC34 Missense_Mutation p.L292M 0.18 tolerated(0.11) probably_damaging(0.919) TCGA-OR-A5JA-01 3 170198352 170198352 G T SLC7A14 Missense_Mutation p.F573L 0.15 deleterious(0.02) possibly_damaging(0.776) TCGA-OR-A5JA-01 3 179483602 179483602 G T USP13 Missense_Mutation p.K793N 0.13 tolerated(0.47) benign(0.158) TCGA-OR-A5JA-01 3 180324359 180324359 C A TTC14 Nonsense_Mutation p.Y380* 0.08 TCGA-OR-A5JA-01 3 184910464 184910464 C A EHHADH Missense_Mutation p.K574N 0.34 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 3 196434499 196434499 C A CEP19 Missense_Mutation p.D143Y 0.36 deleterious(0) probably_damaging(0.957) TCGA-OR-A5JA-01 3 30875737 30875737 G T GADL1 Missense_Mutation p.H314N 0.11 deleterious(0) probably_damaging(0.953) TCGA-OR-A5JA-01 3 39156157 39156157 C A TTC21A Missense_Mutation p.L214M 0.24 tolerated(0.08) possibly_damaging(0.786) TCGA-OR-A5JA-01 3 45589017 45589017 G T LARS2 Missense_Mutation p.D903Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-OR-A5JA-01 3 47161746 47161746 C A SETD2 Missense_Mutation p.W1460C 0.42 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 3 47284747 47284747 C A KIF9 Intron 0.26 TCGA-OR-A5JA-01 3 47454406 47454406 C A PTPN23 Missense_Mutation p.L1548I 0.52 unknown(0) TCGA-OR-A5JA-01 3 48632594 48632594 C A COL7A1 5'UTR 0.16 TCGA-OR-A5JA-01 3 49147976 49147976 G T USP19 Missense_Mutation p.L1252I 0.18 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 3 50256024 50256024 G T SLC38A3 Splice_Site 0.21 TCGA-OR-A5JA-01 3 52557098 52557098 G T STAB1 Missense_Mutation p.G2323V 0.12 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JA-01 3 52643651 52643651 C A PBRM1 Missense_Mutation p.A749S 0.12 deleterious(0) possibly_damaging(0.727) TCGA-OR-A5JA-01 3 52841088 52841088 G T ITIH3 Missense_Mutation p.S743I 0.18 tolerated(0.4) possibly_damaging(0.756) TCGA-OR-A5JA-01 3 56702515 56702515 C A FAM208A Missense_Mutation p.L269F 0.52 tolerated(0.06) benign(0.248) TCGA-OR-A5JA-01 3 57616535 57616535 C A DENND6A Missense_Mutation p.R475I 0.19 deleterious(0.01) possibly_damaging(0.572) TCGA-OR-A5JA-01 3 58145372 58145372 C A FLNB Missense_Mutation p.S2358Y 0.18 deleterious(0) probably_damaging(0.953) TCGA-OR-A5JA-01 3 73112071 73112071 G T EBLN2 3'UTR 0.46 TCGA-OR-A5JA-01 3 96706665 96706665 C A EPHA6 Silent p.T314T 0.47 TCGA-OR-A5JA-01 3 97194260 97194260 C A EPHA6 Missense_Mutation p.F653L 0.37 tolerated(1) possibly_damaging(0.528) TCGA-OR-A5JA-01 4 104082566 104082566 C A CENPE Nonsense_Mutation p.E631* 0.10 TCGA-OR-A5JA-01 4 106534599 106534599 C A ARHGEF38 Nonsense_Mutation p.S148* 0.18 TCGA-OR-A5JA-01 4 108944697 108944697 G T HADH Missense_Mutation p.G205V 0.14 deleterious(0) probably_damaging(0.983) TCGA-OR-A5JA-01 4 111441505 111441505 G T ENPEP Missense_Mutation p.Q570H 0.08 tolerated(0.45) benign(0.009) TCGA-OR-A5JA-01 4 120182880 120182880 G T USP53 Missense_Mutation p.R278I 0.19 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 4 122607510 122607510 C A ANXA5 Silent p.V9V 0.12 TCGA-OR-A5JA-01 4 126329878 126329878 G T FAT4 Missense_Mutation p.S1950I 0.22 probably_damaging(0.959) TCGA-OR-A5JA-01 4 126329907 126329907 G T FAT4 Nonsense_Mutation p.G1960* 0.41 TCGA-OR-A5JA-01 4 126373173 126373173 C A FAT4 Missense_Mutation p.L3668M 0.10 probably_damaging(0.999) TCGA-OR-A5JA-01 4 144797985 144797985 C A GYPE Missense_Mutation p.A54S 0.19 tolerated_low_confidence(1) possibly_damaging(0.567) TCGA-OR-A5JA-01 4 145628246 145628246 C A HHIP Missense_Mutation p.P331T 0.37 tolerated(0.17) possibly_damaging(0.535) TCGA-OR-A5JA-01 4 147830262 147830262 G T TTC29 Missense_Mutation p.L106M 0.30 tolerated(0.25) benign(0.04) TCGA-OR-A5JA-01 4 1742615 1742615 G T TACC3 Missense_Mutation p.D709Y 0.15 deleterious(0) probably_damaging(0.951) TCGA-OR-A5JA-01 4 183696223 183696223 G T TENM3 Nonsense_Mutation p.E1741* 0.39 TCGA-OR-A5JA-01 4 186427748 186427748 G T PDLIM3 Silent p.R241R 0.21 TCGA-OR-A5JA-01 4 187534440 187534440 G T FAT1 Missense_Mutation p.L3096I 0.33 benign(0.056) TCGA-OR-A5JA-01 4 187629193 187629193 C A FAT1 Missense_Mutation p.D597Y 0.61 probably_damaging(1) TCGA-OR-A5JA-01 4 25351214 25351214 C A ZCCHC4 Missense_Mutation p.A287D 0.36 deleterious(0) probably_damaging(0.975) TCGA-OR-A5JA-01 4 30732528 30732528 T C PCDH7 Intron 0.43 TCGA-OR-A5JA-01 4 37903767 37903767 C A TBC1D1 Silent p.V17V 0.26 TCGA-OR-A5JA-01 4 47746504 47746504 G T CORIN Silent p.L238L 0.10 TCGA-OR-A5JA-01 4 47939568 47939568 C A CNGA1 Missense_Mutation p.A384S 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-OR-A5JA-01 4 54011642 54011642 G T SCFD2 Silent p.I473I 0.16 TCGA-OR-A5JA-01 4 57352563 57352563 G T SRP72 Missense_Mutation p.G387C 0.22 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JA-01 4 72363343 72363343 C A SLC4A4 Missense_Mutation p.F700L 0.08 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JA-01 4 73941997 73941997 C G ANKRD17 Missense_Mutation p.G2588A 0.05 benign(0.066) TCGA-OR-A5JA-01 4 74005860 74005860 C A ANKRD17 Missense_Mutation p.A825S 0.05 benign(0.014) TCGA-OR-A5JA-01 4 74735403 74735403 G T CXCL1 Nonsense_Mutation p.E40* 0.30 TCGA-OR-A5JA-01 4 75938041 75938041 C A PARM1 Silent p.S150S 0.06 TCGA-OR-A5JA-01 4 76522169 76522169 G T CDKL2 Silent p.P424P 0.27 TCGA-OR-A5JA-01 4 8293280 8293280 G T HTRA3 Missense_Mutation p.A298S 0.12 deleterious(0) possibly_damaging(0.699) TCGA-OR-A5JA-01 4 882712 882712 G T GAK Missense_Mutation p.D376E 0.31 deleterious(0) possibly_damaging(0.899) TCGA-OR-A5JA-01 4 9452101 9452101 C A DEFB131 Missense_Mutation p.S25Y 0.17 tolerated(1) benign(0) TCGA-OR-A5JA-01 4 947039 947039 C A TMEM175 Missense_Mutation p.S175Y 0.16 deleterious(0.02) possibly_damaging(0.897) TCGA-OR-A5JA-01 5 10258587 10258587 C A CCT5 Silent p.V271V 0.13 TCGA-OR-A5JA-01 5 132087879 132087879 G T CCNI2 Missense_Mutation p.K332N 0.12 deleterious(0) possibly_damaging(0.453) TCGA-OR-A5JA-01 5 132097158 132097158 C A SEPT8 Missense_Mutation p.Q318H 0.10 deleterious(0.02) possibly_damaging(0.62) TCGA-OR-A5JA-01 5 132272803 132272803 C T AFF4 Missense_Mutation p.A27T 0.06 tolerated(0.57) benign(0.195) TCGA-OR-A5JA-01 5 140207893 140207893 G T PCDHA6 Missense_Mutation p.D73Y 0.07 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-OR-A5JA-01 5 140232526 140232526 C A PCDHA9 Intron 0.06 TCGA-OR-A5JA-01 5 140763290 140763290 G T PCDHGA7 Missense_Mutation p.G275V 0.24 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-OR-A5JA-01 5 142264925 142264925 G T ARHGAP26 Missense_Mutation p.L149F 0.25 deleterious(0) possibly_damaging(0.849) TCGA-OR-A5JA-01 5 156456664 156456664 C A HAVCR1 3'UTR 0.19 TCGA-OR-A5JA-01 5 156671402 156671402 G T ITK Missense_Mutation p.A455S 0.34 tolerated(1) benign(0) TCGA-OR-A5JA-01 5 156753261 156753261 G T CYFIP2 Nonsense_Mutation p.E663* 0.16 TCGA-OR-A5JA-01 5 170668124 170668124 C A RANBP17 Nonsense_Mutation p.S872* 0.26 TCGA-OR-A5JA-01 5 177690260 177690260 G T COL23A1 Silent p.G196G 0.17 TCGA-OR-A5JA-01 5 19721543 19721543 C A CDH18 Missense_Mutation p.A186S 0.12 deleterious(0.01) benign(0.017) TCGA-OR-A5JA-01 5 32088697 32088697 G T PDZD2 Missense_Mutation p.A1715S 0.27 tolerated(0.46) benign(0.004) TCGA-OR-A5JA-01 5 38966809 38966809 C A RICTOR Silent p.V411V 0.09 TCGA-OR-A5JA-01 5 480044 480044 G T SLC9A3 Silent p.V518V 0.12 TCGA-OR-A5JA-01 5 54619984 54619984 C A SKIV2L2 Silent p.V99V 0.30 TCGA-OR-A5JA-01 5 65118761 65118761 G T NLN 3'UTR 0.23 TCGA-OR-A5JA-01 5 73142221 73142221 C A ARHGEF28 Missense_Mutation p.S519Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-OR-A5JA-01 5 76264679 76264679 G T CRHBP Missense_Mutation p.S313I 0.28 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JA-01 5 89923239 89923239 G T GPR98 Missense_Mutation p.G295V 0.13 probably_damaging(0.972) TCGA-OR-A5JA-01 5 90106472 90106472 G T GPR98 Missense_Mutation p.G5132V 0.05 probably_damaging(0.972) TCGA-OR-A5JA-01 5 95018528 95018528 C A SPATA9 Missense_Mutation p.G11W 0.17 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 6 102503296 102503296 C A GRIK2 Silent p.G801G 0.31 TCGA-OR-A5JA-01 6 106975232 106975232 G T AIM1 Nonsense_Mutation p.E1081* 0.12 TCGA-OR-A5JA-01 6 10749460 10749460 C A TMEM14B 5'UTR 0.17 TCGA-OR-A5JA-01 6 109850273 109850273 C A AK9 Missense_Mutation p.D1192Y 0.17 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 6 117923266 117923266 G T GOPC Silent p.I62I 0.18 TCGA-OR-A5JA-01 6 119285913 119285913 C A FAM184A Silent p.L1019L 0.19 TCGA-OR-A5JA-01 6 12121200 12121200 G T HIVEP1 Missense_Mutation p.C391F 0.25 deleterious(0.01) possibly_damaging(0.772) TCGA-OR-A5JA-01 6 12163624 12163624 C A HIVEP1 Missense_Mutation p.Q2363K 0.20 tolerated(0.34) benign(0.071) TCGA-OR-A5JA-01 6 121768481 121768481 C A GJA1 Missense_Mutation p.S163Y 0.17 deleterious(0) benign(0.235) TCGA-OR-A5JA-01 6 126210486 126210486 G T NCOA7 Missense_Mutation p.G429V 0.25 deleterious_low_confidence(0.05) benign(0.01) TCGA-OR-A5JA-01 6 131927695 131927695 G T MED23 Missense_Mutation p.H431N 0.19 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JA-01 6 135513461 135513461 G T MYB Splice_Site p.X176_splice 0.09 TCGA-OR-A5JA-01 6 143094923 143094923 G T HIVEP2 Nonsense_Mutation p.S318* 0.20 TCGA-OR-A5JA-01 6 146708064 146708064 C A GRM1 Nonsense_Mutation p.C547* 0.25 TCGA-OR-A5JA-01 6 146708146 146708146 C A GRM1 Missense_Mutation p.L575I 0.29 deleterious(0.01) possibly_damaging(0.805) TCGA-OR-A5JA-01 6 151647016 151647016 C A AKAP12 Intron 0.16 TCGA-OR-A5JA-01 6 152551838 152551838 C A SYNE1 Splice_Site p.X7014_splice 0.17 TCGA-OR-A5JA-01 6 155566830 155566830 C A TIAM2 Missense_Mutation p.A1206D 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 6 160663410 160663435 ATAATAATTTTTAGCCATTGTAGATC G SLC22A2 Splice_Site p.X427_splice 0.22 TCGA-OR-A5JA-01 6 168188273 168188273 G A C6orf123 Nonsense_Mutation p.Q49* 0.14 TCGA-OR-A5JA-01 6 168226966 168226966 G T MLLT4 5'Flank 0.07 TCGA-OR-A5JA-01 6 168396662 168396662 C A KIF25 5'Flank 0.51 TCGA-OR-A5JA-01 6 168708063 168708063 G T DACT2 3'UTR 0.12 TCGA-OR-A5JA-01 6 17608592 17608592 C A FAM8A1 3'UTR 0.13 TCGA-OR-A5JA-01 6 24145937 24145937 G T NRSN1 Silent p.L117L 0.11 TCGA-OR-A5JA-01 6 29591685 29591685 C A GABBR1 Missense_Mutation p.R258S 0.04 deleterious(0.03) probably_damaging(0.988) TCGA-OR-A5JA-01 6 3012810 3012810 G T NQO2 Nonsense_Mutation p.G69* 0.03 TCGA-OR-A5JA-01 6 30552279 30552279 G T ABCF1 Nonsense_Mutation p.E443* 0.10 TCGA-OR-A5JA-01 6 31856281 31856281 C A EHMT2 Silent p.L456L 0.12 TCGA-OR-A5JA-01 6 32825820 32825820 C A PSMB9 Missense_Mutation p.A100E 0.27 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 6 33630346 33630346 C A ITPR3 Missense_Mutation p.F251L 0.47 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 6 38561778 38561778 C A BTBD9 Nonsense_Mutation p.E171* 0.17 TCGA-OR-A5JA-01 6 39271826 39271826 G T KCNK17 Missense_Mutation p.L199I 0.25 tolerated(0.11) probably_damaging(0.942) TCGA-OR-A5JA-01 6 42689604 42689604 C A PRPH2 Missense_Mutation p.D157Y 0.10 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 6 42957364 42957364 G T PPP2R5D Missense_Mutation p.A15S 0.14 tolerated_low_confidence(0.53) benign(0.01) TCGA-OR-A5JA-01 6 44355550 44355550 C G CDC5L 5'UTR 0.27 TCGA-OR-A5JA-01 6 46607338 46607338 C A CYP39A1 Missense_Mutation p.M127I 0.28 tolerated(0.09) benign(0.013) TCGA-OR-A5JA-01 6 47754293 47754293 C A OPN5 Missense_Mutation p.S58Y 0.12 tolerated(0.39) benign(0.068) TCGA-OR-A5JA-01 6 49485158 49485158 C A GLYATL3 Missense_Mutation p.L68I 0.08 tolerated(0.15) possibly_damaging(0.589) TCGA-OR-A5JA-01 6 51612798 51612798 C A PKHD1 Missense_Mutation p.V3206L 0.12 deleterious(0.02) possibly_damaging(0.476) TCGA-OR-A5JA-01 6 53139932 53139932 A T ELOVL5 Missense_Mutation p.L178Q 0.14 deleterious(0) probably_damaging(0.967) TCGA-OR-A5JA-01 6 54805222 54805222 G T FAM83B Nonsense_Mutation p.E485* 0.23 TCGA-OR-A5JA-01 6 56033011 56033011 C A COL21A1 Nonsense_Mutation p.E371* 0.16 TCGA-OR-A5JA-01 6 56569107 56569107 G T DST Missense_Mutation p.L72I 0.07 probably_damaging(0.991) TCGA-OR-A5JA-01 6 63991038 63991038 C A LGSN Missense_Mutation p.A140S 0.34 tolerated(0.05) benign(0.324) TCGA-OR-A5JA-01 6 65301109 65301109 C A EYS Nonsense_Mutation p.E1551* 0.16 TCGA-OR-A5JA-01 6 70916977 70916977 G T COL19A1 Nonstop_Mutation p.*1143Lext*49 0.24 TCGA-OR-A5JA-01 6 74161347 74161347 C A MB21D1 Silent p.V186V 0.06 TCGA-OR-A5JA-01 6 84234143 84234143 C A PRSS35 Missense_Mutation p.S328Y 0.19 deleterious(0.01) probably_damaging(0.929) TCGA-OR-A5JA-01 6 84292059 84292059 G T SNAP91 Missense_Mutation p.F677L 0.24 tolerated(0.13) probably_damaging(0.958) TCGA-OR-A5JA-01 6 86195053 86195053 C A NT5E Silent p.G284G 0.23 TCGA-OR-A5JA-01 6 96657437 96657437 G T FUT9 3'UTR 0.12 TCGA-OR-A5JA-01 7 100674469 100674469 C A MUC17 Missense_Mutation p.Q51K 0.28 benign(0.001) TCGA-OR-A5JA-01 7 100681947 100681947 A T MUC17 Missense_Mutation p.H2417L 0.33 unknown(0) TCGA-OR-A5JA-01 7 103180836 103180836 C A RELN Silent p.V2246V 0.34 TCGA-OR-A5JA-01 7 103243894 103243894 C G RELN Missense_Mutation p.A1064P 0.32 tolerated(1) benign(0.002) TCGA-OR-A5JA-01 7 112090794 112090794 C A IFRD1 Silent p.G17G 0.15 TCGA-OR-A5JA-01 7 115580883 115580883 G T TFEC Missense_Mutation p.Q256K 0.10 tolerated(0.28) benign(0.029) TCGA-OR-A5JA-01 7 124491967 124491967 G T POT1 Nonsense_Mutation p.S303* 0.26 TCGA-OR-A5JA-01 7 126410002 126410002 G T GRM8 Missense_Mutation p.P425H 0.16 deleterious(0.01) possibly_damaging(0.541) TCGA-OR-A5JA-01 7 127631020 127631020 G T SND1 Missense_Mutation p.A564S 0.33 tolerated(0.73) benign(0.028) TCGA-OR-A5JA-01 7 131872275 131872275 C A PLXNA4 Missense_Mutation p.S983I 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 7 139727101 139727101 G T PARP12 Missense_Mutation p.L535M 0.25 tolerated(0.23) benign(0.097) TCGA-OR-A5JA-01 7 143098540 143098540 C A EPHA1 Silent p.V103V 0.13 TCGA-OR-A5JA-01 7 149499235 149499235 G T SSPO RNA 0.08 TCGA-OR-A5JA-01 7 149503951 149503951 C A SSPO RNA 0.30 TCGA-OR-A5JA-01 7 150029538 150029538 C A ZBED6CL 3'UTR 0.13 TCGA-OR-A5JA-01 7 151879463 151879463 C A KMT2C Nonsense_Mutation p.E1828* 0.25 TCGA-OR-A5JA-01 7 154379817 154379817 C A DPP6 Intron 0.30 TCGA-OR-A5JA-01 7 20180669 20180669 G C MACC1 Missense_Mutation p.P820R 0.19 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 7 23240027 23240027 G T NUPL2 Missense_Mutation p.G312V 0.10 deleterious(0.03) possibly_damaging(0.906) TCGA-OR-A5JA-01 7 2752257 2752257 C A AMZ1 Nonsense_Mutation p.C414* 0.11 TCGA-OR-A5JA-01 7 33423320 33423320 T C BBS9 Missense_Mutation p.L611P 0.14 tolerated(0.06) probably_damaging(0.996) TCGA-OR-A5JA-01 7 34889281 34889281 G T NPSR1 Intron 0.23 TCGA-OR-A5JA-01 7 4828476 4828476 C T AP5Z1 Missense_Mutation p.A534V 0.04 tolerated(0.17) benign(0.008) TCGA-OR-A5JA-01 7 49951882 49951882 G A VWC2 3'UTR 0.23 TCGA-OR-A5JA-01 7 55248936 55248936 C A EGFR Intron 0.27 TCGA-OR-A5JA-01 7 55910667 55910667 C A SEPT14 Missense_Mutation p.D176Y 0.05 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 7 63982292 63982292 G T ZNF680 Silent p.I280I 0.20 TCGA-OR-A5JA-01 7 70255405 70255405 G T AUTS2 Missense_Mutation p.W1068L 0.09 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 7 7283285 7283285 C T C1GALT1 Missense_Mutation p.P340L 0.39 deleterious(0.02) benign(0.007) TCGA-OR-A5JA-01 7 75508485 75508485 C A RHBDD2 Missense_Mutation p.L29M 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5JA-01 7 77764344 77764344 G T MAGI2 Missense_Mutation p.Q1009K 0.24 tolerated(0.07) benign(0.153) TCGA-OR-A5JA-01 7 77814971 77814971 C A MAGI2 Missense_Mutation p.R762S 0.10 tolerated(0.17) benign(0.065) TCGA-OR-A5JA-01 7 86394717 86394717 C A GRM3 Missense_Mutation p.L86I 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 7 90003657 90003657 G T GTPBP10 Missense_Mutation p.D194Y 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 7 91792948 91792948 G A LRRD1 Silent p.L523L 0.06 TCGA-OR-A5JA-01 7 91793876 91793876 C A LRRD1 Missense_Mutation p.R214M 0.16 deleterious(0.01) possibly_damaging(0.868) TCGA-OR-A5JA-01 7 91864777 91864777 C A KRIT1 Missense_Mutation p.E223D 0.12 deleterious(0.04) probably_damaging(0.917) TCGA-OR-A5JA-01 7 93633539 93633539 G T BET1 5'UTR 0.12 TCGA-OR-A5JA-01 7 99023158 99023158 C A ATP5J2-PTCD1 Missense_Mutation p.G382C 0.26 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JA-01 7 99778145 99778145 C A STAG3 5'UTR 0.11 TCGA-OR-A5JA-01 7 99817600 99817600 C A PVRIG Missense_Mutation p.H23N 0.25 tolerated_low_confidence(0.25) benign(0.009) TCGA-OR-A5JA-01 8 100733234 100733234 G T VPS13B Missense_Mutation p.D2362Y 0.41 deleterious(0) probably_damaging(0.953) TCGA-OR-A5JA-01 8 103284937 103284937 G T UBR5 Silent p.R2265R 0.52 TCGA-OR-A5JA-01 8 116632191 116632191 C A TRPS1 Missense_Mutation p.G45V 0.42 tolerated_low_confidence(0.27) benign(0.003) TCGA-OR-A5JA-01 8 126030309 126030309 C A SQLE Missense_Mutation p.L405I 0.91 tolerated(0.21) benign(0.118) TCGA-OR-A5JA-01 8 143816819 143816819 A G THEM6 Missense_Mutation p.M197V 0.32 tolerated(0.08) benign(0) TCGA-OR-A5JA-01 8 144687947 144687947 G T PYCRL Missense_Mutation p.Q262K 0.47 tolerated(1) benign(0.003) TCGA-OR-A5JA-01 8 16944544 16944544 G T MICU3 Silent p.L283L 0.15 TCGA-OR-A5JA-01 8 22056776 22056776 G T BMP1 Intron 0.41 TCGA-OR-A5JA-01 8 22064484 22064484 G T BMP1 Missense_Mutation p.R784L 0.04 deleterious(0) possibly_damaging(0.836) TCGA-OR-A5JA-01 8 23294562 23294562 G T ENTPD4 Missense_Mutation p.P420Q 0.27 tolerated(0.06) probably_damaging(0.94) TCGA-OR-A5JA-01 8 24774959 24774959 G T NEFM Nonsense_Mutation p.E531* 0.19 TCGA-OR-A5JA-01 8 48790325 48790325 C A PRKDC Nonsense_Mutation p.E1774* 0.48 TCGA-OR-A5JA-01 8 52744112 52744112 G T PCMTD1 Silent p.R200R 0.18 TCGA-OR-A5JA-01 8 6728199 6728199 C A DEFB1 3'UTR 0.40 TCGA-OR-A5JA-01 8 70591644 70591644 C A SLCO5A1 Missense_Mutation p.A665S 0.43 tolerated(0.09) benign(0.224) TCGA-OR-A5JA-01 8 72973992 72973992 C A TRPA1 Missense_Mutation p.G271V 0.06 deleterious(0.03) possibly_damaging(0.873) TCGA-OR-A5JA-01 8 75737605 75737605 G C PI15 Missense_Mutation p.E41Q 0.17 tolerated(0.07) benign(0.024) TCGA-OR-A5JA-01 8 79578283 79578283 G T ZC2HC1A 5'UTR 0.50 TCGA-OR-A5JA-01 8 82607084 82607084 C A SLC10A5 Nonsense_Mutation p.E42* 0.74 TCGA-OR-A5JA-01 8 87519275 87519275 C A RMDN1 Nonsense_Mutation p.E66* 0.45 TCGA-OR-A5JA-01 8 89053670 89053670 A G MMP16 3'UTR 0.36 TCGA-OR-A5JA-01 8 95538629 95538629 C A KIAA1429 Nonsense_Mutation p.E615* 0.13 TCGA-OR-A5JA-01 9 101606450 101606450 C A GALNT12 Missense_Mutation p.Q473K 0.06 tolerated(0.4) benign(0.026) TCGA-OR-A5JA-01 9 104152827 104152827 G T MRPL50 Missense_Mutation p.P133H 0.04 deleterious(0) probably_damaging(0.994) TCGA-OR-A5JA-01 9 107361140 107361140 C A OR13C5 Missense_Mutation p.M185I 0.12 deleterious(0) benign(0.039) TCGA-OR-A5JA-01 9 108425002 108425002 G T TAL2 Silent p.L75L 0.05 TCGA-OR-A5JA-01 9 114508596 114508596 G T C9orf84 Missense_Mutation p.L269I 0.19 tolerated(0.21) benign(0.027) TCGA-OR-A5JA-01 9 116840418 116840418 C A AMBP Silent p.T24T 0.10 TCGA-OR-A5JA-01 9 118950037 118950037 C A PAPPA Missense_Mutation p.S340R 0.22 tolerated(0.09) benign(0.017) TCGA-OR-A5JA-01 9 123580434 123580434 G T PSMD5 Missense_Mutation p.A422E 0.11 deleterious(0) benign(0.355) TCGA-OR-A5JA-01 9 123624881 123624881 C A PHF19 Missense_Mutation p.G372V 0.21 deleterious(0.02) possibly_damaging(0.524) TCGA-OR-A5JA-01 9 129946151 129946151 C A RALGPS1 Intron 0.13 TCGA-OR-A5JA-01 9 130427557 130427557 C A STXBP1 Missense_Mutation p.L204I 0.17 tolerated(0.08) benign(0.43) TCGA-OR-A5JA-01 9 131559410 131559410 G T TBC1D13 Nonsense_Mutation p.E154* 0.30 TCGA-OR-A5JA-01 9 13176296 13176296 C A MPDZ Missense_Mutation p.G924W 0.08 deleterious(0.01) possibly_damaging(0.641) TCGA-OR-A5JA-01 9 13188983 13188983 C A MPDZ Missense_Mutation p.D722Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JA-01 9 134501621 134501621 C A RAPGEF1 Missense_Mutation p.G465W 0.29 tolerated_low_confidence(0.16) possibly_damaging(0.831) TCGA-OR-A5JA-01 9 136320404 136320404 C A ADAMTS13 Intron 0.25 TCGA-OR-A5JA-01 9 136583858 136583858 C A SARDH Intron 0.10 TCGA-OR-A5JA-01 9 136648640 136648640 G T VAV2 Missense_Mutation p.P570T 0.05 tolerated(0.16) benign(0.022) TCGA-OR-A5JA-01 9 14102504 14102504 C A NFIB Intron 0.15 TCGA-OR-A5JA-01 9 16437424 16437424 G T BNC2 Silent p.S256S 0.12 TCGA-OR-A5JA-01 9 20414048 20414048 C A MLLT3 Missense_Mutation p.D266Y 0.12 deleterious(0) benign(0.259) TCGA-OR-A5JA-01 9 20929356 20929356 G T FOCAD Splice_Site p.X1027_splice 0.15 TCGA-OR-A5JA-01 9 21141179 21141179 C A IFNW1 Nonsense_Mutation p.E131* 0.11 TCGA-OR-A5JA-01 9 32430444 32430444 C A ACO1 Missense_Mutation p.S533Y 0.10 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 9 34568922 34568922 C A CNTFR Missense_Mutation p.V20F 0.10 deleterious(0.02) unknown(0) TCGA-OR-A5JA-01 9 35682151 35682151 G T TPM2 Missense_Mutation p.A261D 0.18 tolerated(0.18) benign(0.1) TCGA-OR-A5JA-01 9 35810505 35810505 C A SPAG8 Missense_Mutation p.E377D 0.23 deleterious(0.03) probably_damaging(0.974) TCGA-OR-A5JA-01 9 40705691 40705691 C A SPATA31A3 Silent p.P1116P 0.14 TCGA-OR-A5JA-01 9 4583052 4583052 C A SLC1A1 Missense_Mutation p.S403Y 0.14 deleterious(0) benign(0.322) TCGA-OR-A5JA-01 9 6013222 6013222 C A RANBP6 Nonsense_Mutation p.E796* 0.29 TCGA-OR-A5JA-01 9 72741314 72741314 G T MAMDC2 Missense_Mutation p.A295S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5JA-01 9 77411734 77411734 G T TRPM6 Missense_Mutation p.P772T 0.33 deleterious(0.01) probably_damaging(1) TCGA-OR-A5JA-01 9 79121327 79121327 C A GCNT1 3'UTR 0.09 TCGA-OR-A5JA-01 9 84531593 84531593 G T SPATA31D5P RNA 0.28 TCGA-OR-A5JA-01 9 95021193 95021193 C A IARS Silent p.L653L 0.16 TCGA-OR-A5JA-01 9 95572091 95572091 G T ANKRD19P RNA 0.05 TCGA-OR-A5JA-01 9 97522087 97522087 G T C9orf3 Missense_Mutation p.A8S 0.15 tolerated(1) benign(0.002) TCGA-OR-A5JA-01 9 98728916 98728916 C A ERCC6L2 Missense_Mutation p.H685N 0.26 tolerated(0.15) benign(0.206) TCGA-OR-A5JA-01 X 100169962 100169962 C A XKRX Nonsense_Mutation p.E239* 0.18 TCGA-OR-A5JA-01 X 100500030 100500030 G T DRP2 Missense_Mutation p.R360I 0.12 deleterious(0) probably_damaging(1) TCGA-OR-A5JA-01 X 10106875 10106875 C A WWC3 Missense_Mutation p.Q995K 0.26 deleterious(0.03) benign(0.356) TCGA-OR-A5JA-01 X 101972622 101972622 G T GPRASP2 3'UTR 0.20 TCGA-OR-A5JA-01 X 10535274 10535274 G T MID1 Missense_Mutation p.A105D 0.59 tolerated_low_confidence(0.24) benign(0.112) TCGA-OR-A5JA-01 X 107320376 107320376 C A VSIG1 Missense_Mutation p.T346N 0.21 tolerated_low_confidence(0.42) benign(0.004) TCGA-OR-A5JA-01 X 107829959 107829959 G T COL4A5 Missense_Mutation p.G383C 0.04 unknown(0) TCGA-OR-A5JA-01 X 110980045 110980045 C A ALG13 Nonsense_Mutation p.S878* 0.23 TCGA-OR-A5JA-01 X 119387850 119387850 G T ZBTB33 Missense_Mutation p.D194Y 0.16 deleterious(0) possibly_damaging(0.905) TCGA-OR-A5JA-01 X 123516596 123516596 G T TENM1 Missense_Mutation p.P2455H 0.10 tolerated(0.11) probably_damaging(0.995) TCGA-OR-A5JA-01 X 129205092 129205092 G T ELF4 Silent p.S244S 0.09 TCGA-OR-A5JA-01 X 130411109 130411109 C A IGSF1 Missense_Mutation p.Q809H 0.07 tolerated(0.2) benign(0.005) TCGA-OR-A5JA-01 X 132352122 132352122 G T TFDP3 Missense_Mutation p.Q56K 0.09 tolerated(0.05) benign(0.01) TCGA-OR-A5JA-01 X 144907318 144907318 C A SLITRK2 3'UTR 0.20 TCGA-OR-A5JA-01 X 152226031 152226031 G A PNMA3 Missense_Mutation p.E207K 0.12 deleterious(0) possibly_damaging(0.891) TCGA-OR-A5JA-01 X 152827696 152827696 G T ATP2B3 Missense_Mutation p.G1052V 0.26 deleterious(0) probably_damaging(0.973) TCGA-OR-A5JA-01 X 23019100 23019100 C A DDX53 Missense_Mutation p.A309D 0.23 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JA-01 X 27840275 27840275 C A MAGEB10 Missense_Mutation p.S284R 0.12 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JA-01 X 2942061 2942061 G T ARSH Splice_Site p.X301_splice 0.21 TCGA-OR-A5JA-01 X 31697546 31697546 C A DMD Missense_Mutation p.W2606C 0.11 possibly_damaging(0.878) TCGA-OR-A5JA-01 X 3241451 3241451 C A MXRA5 Missense_Mutation p.A759S 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5JA-01 X 3242694 3242694 C A MXRA5 Missense_Mutation p.K344N 0.24 deleterious(0.01) possibly_damaging(0.451) TCGA-OR-A5JA-01 X 40568698 40568698 G T MED14 Nonsense_Mutation p.S396* 0.11 TCGA-OR-A5JA-01 X 41554930 41554930 G T GPR34 Missense_Mutation p.S15I 0.04 tolerated_low_confidence(0.43) benign(0.107) TCGA-OR-A5JA-01 X 47086775 47086775 C A CDK16 Intron 0.23 TCGA-OR-A5JA-01 X 47836739 47836739 G T ZNF182 Silent p.L249L 0.24 TCGA-OR-A5JA-01 X 48776140 48776140 C A PIM2 5'UTR 0.05 TCGA-OR-A5JA-01 X 48934319 48934319 C T WDR45 Missense_Mutation p.R110H 0.20 deleterious(0.05) benign(0.018) TCGA-OR-A5JA-01 X 49646192 49646192 G T USP27X Nonsense_Mutation p.E428* 0.21 TCGA-OR-A5JA-01 X 50052072 50052072 G T CCNB3 Missense_Mutation p.K301N 0.18 tolerated(0.26) benign(0.023) TCGA-OR-A5JA-01 X 53607986 53607986 C A HUWE1 Missense_Mutation p.V1841F 0.16 probably_damaging(0.972) TCGA-OR-A5JA-01 X 57621755 57621755 G T ZXDB 3'UTR 0.08 TCGA-OR-A5JA-01 X 67741213 67741213 G T YIPF6 Splice_Site p.X103_splice 0.52 TCGA-OR-A5JA-01 X 67751770 67751770 C G YIPF6 Missense_Mutation p.L214V 0.13 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JA-01 X 67940921 67940921 C A STARD8 Silent p.I735I 0.23 TCGA-OR-A5JA-01 X 70352313 70352313 C A MED12 Missense_Mutation p.A1447D 0.10 probably_damaging(0.991) TCGA-OR-A5JA-01 X 70596893 70596893 C A TAF1 Nonsense_Mutation p.S209* 0.21 TCGA-OR-A5JA-01 X 70598293 70598293 G T TAF1 Missense_Mutation p.R401I 0.06 tolerated(0.16) benign(0.017) TCGA-OR-A5JA-01 X 70832880 70832880 G T ACRC 3'UTR 0.10 TCGA-OR-A5JA-01 X 72667507 72667507 G T CDX4 Missense_Mutation p.D140Y 0.16 tolerated(0.05) probably_damaging(0.951) TCGA-OR-A5JA-01 X 76918898 76918898 C A ATRX Nonsense_Mutation p.E1365* 0.23 TCGA-OR-A5JB-01 10 118451896 118451896 G C HSPA12A Missense_Mutation p.P210R 0.40 deleterious(0) possibly_damaging(0.691) TCGA-OR-A5JB-01 10 124457937 124457937 C G C10orf120 Missense_Mutation p.R107T 0.37 tolerated(0.07) benign(0.019) TCGA-OR-A5JB-01 10 129903549 129903549 C T MKI67 Silent p.K2185K 0.33 TCGA-OR-A5JB-01 10 13264100 13264100 G A UCMA 3'UTR 0.43 TCGA-OR-A5JB-01 10 15761654 15761654 G A ITGA8 Silent p.F39F 0.28 TCGA-OR-A5JB-01 10 45602428 45602428 G A RSU1P2 RNA 0.23 TCGA-OR-A5JB-01 10 5005522 5005522 C T AKR1C1 5'UTR 0.39 TCGA-OR-A5JB-01 10 50184861 50184861 C A WDFY4 Missense_Mutation p.A3043E 0.39 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JB-01 10 5979171 5979172 GC - FBXO18 Frame_Shift_Del p.A1073Hfs*14 0.26 TCGA-OR-A5JB-01 10 61847904 61847904 C A ANK3 Splice_Site p.X1180_splice 0.40 TCGA-OR-A5JB-01 10 71018532 71018532 G A HKDC1 Missense_Mutation p.G678E 0.30 deleterious(0.01) probably_damaging(1) TCGA-OR-A5JB-01 10 84733611 84733611 C A NRG3 Missense_Mutation p.P451H 0.44 deleterious(0.02) possibly_damaging(0.456) TCGA-OR-A5JB-01 10 85982398 85982398 C A LRIT2 Nonsense_Mutation p.E311* 0.38 TCGA-OR-A5JB-01 10 96084321 96084321 G A PLCE1 Silent p.V2239V 0.37 TCGA-OR-A5JB-01 11 105950341 105950341 C A AASDHPPT Missense_Mutation p.H111N 0.33 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 11 109294764 109294764 C G C11orf87 Silent p.P135P 0.47 TCGA-OR-A5JB-01 11 119149280 119149280 G T CBL Missense_Mutation p.V430L 0.28 tolerated(0.05) benign(0.036) TCGA-OR-A5JB-01 11 119510594 119510594 G T RP11-196E1.3 RNA 0.29 TCGA-OR-A5JB-01 11 119548456 119548456 C A PVRL1 Missense_Mutation p.S181I 0.35 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JB-01 11 123754008 123754008 A G TMEM225 Missense_Mutation p.L172P 0.30 deleterious(0.05) possibly_damaging(0.902) TCGA-OR-A5JB-01 11 1472024 1472024 G T BRSK2 Missense_Mutation p.V545F 0.41 deleterious(0) probably_damaging(0.953) TCGA-OR-A5JB-01 11 14991506 14991506 G C CALCA Missense_Mutation p.Q68E 0.30 tolerated(0.13) possibly_damaging(0.492) TCGA-OR-A5JB-01 11 25071584 25071584 C - LUZP2 Frame_Shift_Del p.P256Lfs*38 0.27 TCGA-OR-A5JB-01 11 26581425 26581425 T A MUC15 3'UTR 0.33 TCGA-OR-A5JB-01 11 27016195 27016195 G T FIBIN Missense_Mutation p.G41V 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-OR-A5JB-01 11 33363182 33363182 G T HIPK3 Missense_Mutation p.C616F 0.33 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JB-01 11 35547114 35547114 G T PAMR1 Missense_Mutation p.T7K 0.23 tolerated_low_confidence(0.09) benign(0.119) TCGA-OR-A5JB-01 11 3752722 3752722 G T NUP98 Silent p.V543V 0.42 TCGA-OR-A5JB-01 11 40136500 40136500 G A LRRC4C Missense_Mutation p.T448I 0.33 deleterious(0.02) benign(0.197) TCGA-OR-A5JB-01 11 4674519 4674519 G T OR51E1 Missense_Mutation p.V255L 0.28 deleterious(0.04) benign(0.105) TCGA-OR-A5JB-01 11 55405833 55405833 C A OR4P4 5'Flank 0.47 TCGA-OR-A5JB-01 11 58035112 58035112 C A OR10W1 Silent p.L73L 0.38 TCGA-OR-A5JB-01 11 58206694 58206694 C A OR5B12 Nonsense_Mutation p.G311* 0.41 TCGA-OR-A5JB-01 11 5842285 5842285 C T OR52N2 Silent p.F240F 0.35 TCGA-OR-A5JB-01 11 5862980 5862980 C A OR52E6 Missense_Mutation p.V50L 0.25 tolerated(0.15) probably_damaging(0.994) TCGA-OR-A5JB-01 11 59807767 59807767 T C OOSP2 5'UTR 0.33 TCGA-OR-A5JB-01 11 6007764 6007764 G T OR52L1 Missense_Mutation p.L133I 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-OR-A5JB-01 11 61133533 61133533 G A TMEM138 Missense_Mutation p.V49I 0.32 tolerated(1) benign(0.001) TCGA-OR-A5JB-01 11 61978049 61978049 C G SCGB2A1 Missense_Mutation p.L74V 0.37 deleterious(0.03) possibly_damaging(0.694) TCGA-OR-A5JB-01 11 65089829 65089829 C G CDC42EP2 3'UTR 0.16 TCGA-OR-A5JB-01 11 6554962 6554962 G C DNHD1 Missense_Mutation p.V853L 0.37 benign(0.046) TCGA-OR-A5JB-01 11 65631183 65631183 A G MUS81 Missense_Mutation p.R318G 0.34 tolerated(0.07) benign(0.005) TCGA-OR-A5JB-01 11 74563036 74563036 C T XRRA1 Missense_Mutation p.R413Q 0.41 tolerated(0.05) probably_damaging(0.941) TCGA-OR-A5JB-01 11 85346839 85346839 C A TMEM126B Intron 0.55 TCGA-OR-A5JB-01 11 89395328 89395328 T C FOLH1B RNA 0.31 TCGA-OR-A5JB-01 11 92534976 92534976 G C FAT3 Missense_Mutation p.V2933L 0.32 probably_damaging(0.971) TCGA-OR-A5JB-01 11 92881943 92881943 G A SLC36A4 Silent p.S425S 0.41 TCGA-OR-A5JB-01 11 93457488 93457488 G C KIAA1731 Missense_Mutation p.D2089H 0.25 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 11 93554296 93554296 G T VSTM5 Missense_Mutation p.D95E 0.34 tolerated(0.05) benign(0.222) TCGA-OR-A5JB-01 12 101723173 101723173 G A UTP20 Silent p.Q1121Q 0.36 TCGA-OR-A5JB-01 12 102117036 102117036 G C CHPT1 Missense_Mutation p.E291Q 0.45 tolerated(0.06) benign(0.318) TCGA-OR-A5JB-01 12 104107546 104107546 G T STAB2 Nonsense_Mutation p.E1513* 0.30 TCGA-OR-A5JB-01 12 109940954 109940954 C T UBE3B Missense_Mutation p.S470L 0.40 deleterious(0.01) benign(0.003) TCGA-OR-A5JB-01 12 113348875 113348875 T G OAS1 Nonsense_Mutation p.Y163* 0.36 TCGA-OR-A5JB-01 12 113836362 113836362 G A SDS Missense_Mutation p.P128L 0.34 deleterious(0.01) benign(0.323) TCGA-OR-A5JB-01 12 113836363 113836363 G T SDS Missense_Mutation p.P128T 0.33 deleterious(0.04) benign(0.151) TCGA-OR-A5JB-01 12 124499020 124499020 G T ZNF664 3'UTR 0.40 TCGA-OR-A5JB-01 12 12814767 12814767 A T GPR19 Missense_Mutation p.W206R 0.44 tolerated(0.57) benign(0.296) TCGA-OR-A5JB-01 12 130830339 130830339 G A PIWIL1 Missense_Mutation p.E78K 0.35 tolerated(0.08) benign(0.231) TCGA-OR-A5JB-01 12 18435177 18435177 C T PIK3C2G Silent p.Y54Y 0.29 TCGA-OR-A5JB-01 12 29786206 29786206 C A TMTC1 Silent p.L334L 0.37 TCGA-OR-A5JB-01 12 40919203 40919203 C T MUC19 Intron 0.18 TCGA-OR-A5JB-01 12 45568015 45568015 G C PLEKHA8P1 RNA 0.32 TCGA-OR-A5JB-01 12 48131974 48131974 A T RAPGEF3 Splice_Site p.X861_splice 0.35 TCGA-OR-A5JB-01 12 52163733 52163733 G C SCN8A Missense_Mutation p.E1152Q 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-OR-A5JB-01 12 52827680 52827680 G T KRT75 Missense_Mutation p.Q137K 0.27 deleterious(0.03) benign(0.086) TCGA-OR-A5JB-01 12 53044230 53044230 C A KRT2 Silent p.G231G 0.34 TCGA-OR-A5JB-01 12 53470946 53470946 T A SPRYD3 Silent p.R41R 0.27 TCGA-OR-A5JB-01 12 55523835 55523835 G T OR9K2 Missense_Mutation p.D95Y 0.25 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 12 6639952 6639952 G A NCAPD2 Silent p.Q1311Q 0.42 TCGA-OR-A5JB-01 12 66773061 66773061 C A GRIP1 Missense_Mutation p.G822C 0.54 tolerated(0.07) possibly_damaging(0.698) TCGA-OR-A5JB-01 12 69995213 69995213 C T CCT2 3'UTR 0.33 TCGA-OR-A5JB-01 12 8375115 8375115 G T FAM90A1 Missense_Mutation p.P233H 0.22 deleterious(0.01) possibly_damaging(0.866) TCGA-OR-A5JB-01 12 88381692 88381692 G T C12orf50 Missense_Mutation p.P251H 0.05 deleterious(0.02) possibly_damaging(0.86) TCGA-OR-A5JB-01 12 91348604 91348604 C A CCER1 5'UTR 0.48 TCGA-OR-A5JB-01 12 98940140 98940140 G T TMPO Nonsense_Mutation p.G223* 0.31 TCGA-OR-A5JB-01 13 20024411 20024411 G A TPTE2 Silent p.P292P 0.56 TCGA-OR-A5JB-01 13 36384973 36384973 C A DCLK1 Nonsense_Mutation p.G563* 0.53 TCGA-OR-A5JB-01 13 48655799 48655799 G T MED4 Missense_Mutation p.P164T 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5JB-01 13 53624435 53624435 C A OLFM4 Silent p.T354T 0.57 TCGA-OR-A5JB-01 13 60545177 60545177 G C DIAPH3 Missense_Mutation p.P590A 0.71 tolerated(0.16) benign(0.196) TCGA-OR-A5JB-01 13 70413106 70413106 A T KLHL1 Splice_Site p.X472_splice 0.58 TCGA-OR-A5JB-01 14 101347633 101347633 C A RTL1 Nonsense_Mutation p.E1165* 0.36 TCGA-OR-A5JB-01 14 105208191 105208191 A C ADSSL1 Missense_Mutation p.Y310S 0.32 deleterious(0) possibly_damaging(0.685) TCGA-OR-A5JB-01 14 106307301 106307301 G C IGHD Silent p.S246S 0.37 TCGA-OR-A5JB-01 14 107095282 107095282 C A IGHV4-61 Silent p.L66L 0.31 TCGA-OR-A5JB-01 14 20020123 20020123 G T POTEM Missense_Mutation p.P33H 0.55 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-OR-A5JB-01 14 24584856 24584856 A T DCAF11 Missense_Mutation p.E18V 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-OR-A5JB-01 14 24734766 24734766 C A RABGGTA 3'UTR 0.23 TCGA-OR-A5JB-01 14 24785951 24785951 G A LTB4R 3'UTR 0.39 TCGA-OR-A5JB-01 14 29237443 29237443 C A FOXG1 Missense_Mutation p.R320S 0.35 deleterious(0.05) benign(0.034) TCGA-OR-A5JB-01 14 42356008 42356008 C G LRFN5 Missense_Mutation p.D60E 0.31 tolerated(0.06) possibly_damaging(0.866) TCGA-OR-A5JB-01 14 45645661 45645661 G T FANCM Missense_Mutation p.G1235V 0.35 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 14 52923853 52923853 C G TXNDC16 Missense_Mutation p.G553A 0.37 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JB-01 14 53004373 53004373 T C TXNDC16 Silent p.E87E 0.17 TCGA-OR-A5JB-01 14 59113119 59113119 G T DACT1 Missense_Mutation p.G593V 0.32 tolerated(0.36) possibly_damaging(0.736) TCGA-OR-A5JB-01 14 68251818 68251818 T A ZFYVE26 Missense_Mutation p.T1161S 0.32 tolerated(0.05) possibly_damaging(0.572) TCGA-OR-A5JB-01 14 69349604 69349604 C T ACTN1 Missense_Mutation p.G602S 0.30 tolerated(1) benign(0.001) TCGA-OR-A5JB-01 14 76349181 76349181 G A TTLL5 Missense_Mutation p.V1226I 0.32 tolerated_low_confidence(0.11) benign(0.002) TCGA-OR-A5JB-01 14 86093354 86093354 G A FLRT2 3'UTR 0.25 TCGA-OR-A5JB-01 14 94420823 94420823 C T ASB2 Silent p.A106A 0.39 TCGA-OR-A5JB-01 14 94955965 94955965 C A SERPINA12 Missense_Mutation p.V349L 0.38 tolerated(0.07) benign(0.058) TCGA-OR-A5JB-01 15 100636657 100636657 C A ADAMTS17 Missense_Mutation p.G681W 0.25 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 15 21071370 21071370 C A POTEB2 Missense_Mutation p.G81C 0.10 deleterious(0) probably_damaging(0.98) TCGA-OR-A5JB-01 15 22382673 22382673 C A OR4N4 Silent p.A67A 0.09 TCGA-OR-A5JB-01 15 23931489 23931489 G T NDN Silent p.S292S 0.50 TCGA-OR-A5JB-01 15 26806226 26806226 C A GABRB3 Missense_Mutation p.M311I 0.41 tolerated(0.27) benign(0.378) TCGA-OR-A5JB-01 15 28422657 28422657 T C HERC2 Splice_Site p.X3055_splice 0.42 TCGA-OR-A5JB-01 15 29416896 29416896 C A FAM189A1 Missense_Mutation p.G433W 0.50 deleterious(0.01) benign(0.177) TCGA-OR-A5JB-01 15 41313297 41313297 G C INO80 Nonsense_Mutation p.Y1025* 0.36 TCGA-OR-A5JB-01 15 48714179 48714179 C A FBN1 Nonsense_Mutation p.G2514* 0.46 TCGA-OR-A5JB-01 15 50888468 50888468 G C TRPM7 Missense_Mutation p.L1092V 0.34 deleterious(0) probably_damaging(0.922) TCGA-OR-A5JB-01 15 63054564 63054564 A T TLN2 Missense_Mutation p.N1625Y 0.37 deleterious(0) probably_damaging(0.969) TCGA-OR-A5JB-01 15 65687496 65687496 C A IGDCC4 Silent p.V504V 0.37 TCGA-OR-A5JB-01 15 73766261 73766261 T A C15orf60 Missense_Mutation p.L83Q 0.24 deleterious(0.03) possibly_damaging(0.693) TCGA-OR-A5JB-01 15 74180025 74180025 T C TBC1D21 Missense_Mutation p.M281T 0.24 tolerated(1) benign(0.439) TCGA-OR-A5JB-01 15 75969502 75969502 A T CSPG4 Nonsense_Mutation p.Y1786* 0.19 TCGA-OR-A5JB-01 15 79063945 79063945 C T ADAMTS7 Silent p.K786K 0.31 TCGA-OR-A5JB-01 15 81624991 81624991 G T TMC3 Silent p.P1024P 0.28 TCGA-OR-A5JB-01 15 85327349 85327349 G C ZNF592 Missense_Mutation p.K481N 0.39 tolerated(0.15) benign(0.246) TCGA-OR-A5JB-01 15 86791011 86791011 G T AGBL1 Silent p.R166R 0.35 TCGA-OR-A5JB-01 15 91436336 91436336 G A FES Silent p.L611L 0.38 TCGA-OR-A5JB-01 15 93499776 93499776 C G CHD2 Missense_Mutation p.L633V 0.33 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JB-01 16 1256150 1256150 C A CACNA1H Missense_Mutation p.R884S 0.68 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 16 129196 129196 A C MPG 5'UTR 0.64 TCGA-OR-A5JB-01 16 27523098 27523098 C A GTF3C1 Silent p.R366R 0.68 TCGA-OR-A5JB-01 16 2815642 2815642 C A SRRM2 Missense_Mutation p.R1705S 0.55 unknown(0) TCGA-OR-A5JB-01 16 56899349 56899349 G C SLC12A3 Missense_Mutation p.E68Q 0.39 deleterious(0.01) possibly_damaging(0.812) TCGA-OR-A5JB-01 16 57736008 57736008 G T CCDC135 Missense_Mutation p.R222L 0.43 tolerated(0.36) benign(0.415) TCGA-OR-A5JB-01 16 68056823 68056823 G C DDX28 Missense_Mutation p.Q95E 0.48 tolerated(0.09) benign(0.008) TCGA-OR-A5JB-01 16 68057548 68057548 G C DDX28 5'UTR 0.36 TCGA-OR-A5JB-01 16 72829227 72829228 GC T ZFHX3 Frame_Shift_Del p.P2452Qfs*76 0.23 TCGA-OR-A5JB-01 16 83378568 83378568 G T CDH13 Silent p.R293R 0.42 TCGA-OR-A5JB-01 16 90099238 90099238 A T GAS8 Missense_Mutation p.Q134L 0.24 tolerated(0.07) benign(0.005) TCGA-OR-A5JB-01 16 90099240 90099240 G T GAS8 Nonsense_Mutation p.E135* 0.24 TCGA-OR-A5JB-01 17 10531878 10531878 A T MYH3 3'UTR 0.24 TCGA-OR-A5JB-01 17 20406225 20406225 C A RP11-434D2.7 3'Flank 0.68 TCGA-OR-A5JB-01 17 21319469 21319469 A T KCNJ12 Missense_Mutation p.H272L 0.23 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 17 2601707 2601707 C A CLUH Missense_Mutation p.A444S 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5JB-01 17 27807461 27807461 G T TAOK1 Missense_Mutation p.M175I 0.56 tolerated(1) benign(0.004) TCGA-OR-A5JB-01 17 29560226 29560226 C T NF1 Nonsense_Mutation p.Q1235* 0.66 TCGA-OR-A5JB-01 17 39406681 39406681 C A KRTAP9-4 3'UTR 0.72 TCGA-OR-A5JB-01 17 61905533 61905533 C A PSMC5 Silent p.L20L 0.76 TCGA-OR-A5JB-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.46 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JB-01 17 9801437 9801437 A T RCVRN Missense_Mutation p.V193E 0.55 tolerated(0.17) benign(0.176) TCGA-OR-A5JB-01 18 31158619 31158619 G T ASXL3 Missense_Mutation p.K8N 0.57 benign(0.021) TCGA-OR-A5JB-01 18 42531994 42531994 T A SETBP1 Missense_Mutation p.C897S 0.56 deleterious(0.04) probably_damaging(0.993) TCGA-OR-A5JB-01 18 42532100 42532100 G T SETBP1 Missense_Mutation p.S932I 0.56 deleterious(0.01) possibly_damaging(0.733) TCGA-OR-A5JB-01 18 61390440 61390440 C G SERPINB11 Nonsense_Mutation p.S329* 0.57 TCGA-OR-A5JB-01 19 1220640 1220640 C T STK11 Nonsense_Mutation p.Q220* 0.63 TCGA-OR-A5JB-01 19 14749012 14749012 C A EMR3 Missense_Mutation p.M463I 0.07 tolerated(0.05) benign(0.077) TCGA-OR-A5JB-01 19 17598000 17598000 G T SLC27A1 Missense_Mutation p.G194W 0.79 deleterious(0.01) possibly_damaging(0.856) TCGA-OR-A5JB-01 19 17994715 17994715 C A SLC5A5 Silent p.G462G 0.61 TCGA-OR-A5JB-01 19 30935331 30935331 G T ZNF536 Nonsense_Mutation p.E288* 0.46 TCGA-OR-A5JB-01 19 3179663 3179663 G T S1PR4 Missense_Mutation p.W291C 0.56 deleterious(0.01) benign(0.089) TCGA-OR-A5JB-01 19 33078192 33078192 G C PDCD5 Missense_Mutation p.D122H 0.47 deleterious(0) possibly_damaging(0.586) TCGA-OR-A5JB-01 19 36110596 36110596 G A HAUS5 Missense_Mutation p.E448K 0.29 tolerated(0.42) benign(0.02) TCGA-OR-A5JB-01 19 36435463 36435463 G A LRFN3 Missense_Mutation p.E477K 0.33 tolerated(0.08) benign(0.045) TCGA-OR-A5JB-01 19 37734341 37734341 G T ZNF383 Missense_Mutation p.K401N 0.45 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JB-01 19 38027960 38027960 C T ZNF793 Nonsense_Mutation p.Q134* 0.39 TCGA-OR-A5JB-01 19 39019290 39019290 G A RYR1 Silent p.L3663L 0.32 TCGA-OR-A5JB-01 19 39038919 39038919 C A RYR1 Silent p.L4047L 0.39 TCGA-OR-A5JB-01 19 40901699 40901699 G C PRX Missense_Mutation p.L854V 0.34 deleterious(0) possibly_damaging(0.567) TCGA-OR-A5JB-01 19 47878770 47878770 G T DHX34 Missense_Mutation p.Q704H 0.38 tolerated(0.12) benign(0.007) TCGA-OR-A5JB-01 19 49920859 49920859 G T CCDC155 3'UTR 0.38 TCGA-OR-A5JB-01 19 50905080 50905080 C T POLD1 Missense_Mutation p.S121F 0.48 deleterious(0.01) benign(0.08) TCGA-OR-A5JB-01 19 50918779 50918779 C T POLD1 Silent p.I883I 0.32 TCGA-OR-A5JB-01 19 51890472 51890472 C A LIM2 Missense_Mutation p.D76Y 0.30 tolerated_low_confidence(1) benign(0) TCGA-OR-A5JB-01 19 51890473 51890473 C A LIM2 Silent p.A75A 0.30 TCGA-OR-A5JB-01 19 52249798 52249798 C A FPR1 Missense_Mutation p.W150C 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 19 53762456 53762456 C T VN1R2 Silent p.L276L 0.34 TCGA-OR-A5JB-01 19 54756391 54756391 C A LILRB5 Missense_Mutation p.G499V 0.58 deleterious(0.01) benign(0.288) TCGA-OR-A5JB-01 19 55054617 55054617 G T KIR3DX1 3'UTR 0.31 TCGA-OR-A5JB-01 19 55993021 55993021 C G ZNF628 Missense_Mutation p.P154R 0.11 tolerated(0.05) probably_damaging(0.961) TCGA-OR-A5JB-01 19 56274485 56274485 T C RFPL4A Missense_Mutation p.C270R 0.14 deleterious(0) probably_damaging(0.977) TCGA-OR-A5JB-01 19 56467088 56467088 T A NLRP8 Missense_Mutation p.M555K 0.46 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JB-01 19 56511131 56511131 C G NLRP5 Missense_Mutation p.L14V 0.38 tolerated_low_confidence(0.4) unknown(0) TCGA-OR-A5JB-01 19 57134182 57134182 G T ZNF71 3'UTR 0.35 TCGA-OR-A5JB-01 19 57911240 57911240 G T ZNF548 Nonsense_Mutation p.E541* 0.48 TCGA-OR-A5JB-01 19 9059570 9059570 C G MUC16 Missense_Mutation p.E9292D 0.50 unknown(0) TCGA-OR-A5JB-01 19 9060440 9060440 G - MUC16 Frame_Shift_Del p.T9003Hfs*34 0.37 TCGA-OR-A5JB-01 19 9071377 9071377 T A MUC16 Missense_Mutation p.S5357C 0.63 unknown(0) TCGA-OR-A5JB-01 19 9080534 9080534 G T MUC16 Missense_Mutation p.T3166N 0.58 unknown(0) TCGA-OR-A5JB-01 1 109544988 109544988 T C WDR47 Missense_Mutation p.R439G 0.46 deleterious(0) possibly_damaging(0.587) TCGA-OR-A5JB-01 1 111725483 111725483 C A CEPT1 Silent p.I303I 0.49 TCGA-OR-A5JB-01 1 120056635 120056635 G A HSD3B1 Silent p.E163E 0.46 TCGA-OR-A5JB-01 1 120438173 120438173 G A ADAM30 Missense_Mutation p.R263C 0.45 tolerated(0.16) probably_damaging(0.935) TCGA-OR-A5JB-01 1 12294377 12294377 C G VPS13D Silent p.V18V 0.32 TCGA-OR-A5JB-01 1 12939472 12939472 C T PRAMEF4 Missense_Mutation p.V444M 0.10 tolerated(0.09) possibly_damaging(0.89) TCGA-OR-A5JB-01 1 145542356 145542356 C T ITGA10 3'UTR 0.62 TCGA-OR-A5JB-01 1 149898812 149898812 T A SF3B4 Splice_Site p.X55_splice 0.53 TCGA-OR-A5JB-01 1 150230505 150230505 C A CA14 5'UTR 0.16 TCGA-OR-A5JB-01 1 150248174 150248174 T C C1orf54 Missense_Mutation p.I52T 0.43 tolerated(0.07) benign(0) TCGA-OR-A5JB-01 1 152188371 152188371 G T HRNR Missense_Mutation p.Q1912K 0.06 unknown(0) TCGA-OR-A5JB-01 1 152286710 152286710 C T FLG Missense_Mutation p.E218K 0.19 possibly_damaging(0.637) TCGA-OR-A5JB-01 1 152681610 152681610 A G LCE4A Missense_Mutation p.K20R 0.18 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5JB-01 1 152944424 152944424 C A SPRR4 Missense_Mutation p.Q20K 0.18 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5JB-01 1 155028275 155028275 G A ADAM15 Missense_Mutation p.V208M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5JB-01 1 156628418 156628418 C T BCAN Missense_Mutation p.R841C 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 1 158627366 158627367 - T SPTA1 Frame_Shift_Ins p.Q903Afs*5 0.42 TCGA-OR-A5JB-01 1 160141399 160141399 G T ATP1A4 Missense_Mutation p.S569I 0.85 deleterious(0.05) benign(0.257) TCGA-OR-A5JB-01 1 17046636 17046636 C A ESPNP RNA 0.15 TCGA-OR-A5JB-01 1 176852120 176852120 C T ASTN1 Silent p.L1079L 0.38 TCGA-OR-A5JB-01 1 180471345 180471345 C G ACBD6 Silent p.L19L 0.39 TCGA-OR-A5JB-01 1 185069018 185069018 C G RNF2 Nonsense_Mutation p.S278* 0.36 TCGA-OR-A5JB-01 1 203652311 203652311 G T ATP2B4 5'UTR 0.74 TCGA-OR-A5JB-01 1 217793701 217793701 C A GPATCH2 Missense_Mutation p.R66M 0.71 tolerated(0.12) probably_damaging(0.999) TCGA-OR-A5JB-01 1 220835222 220835222 G T MARK1 Missense_Mutation p.R701L 0.76 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 1 228471220 228471220 C T OBSCN Silent p.F3347F 0.32 TCGA-OR-A5JB-01 1 24385424 24385424 A T MYOM3 Missense_Mutation p.M1347K 0.28 deleterious(0.01) possibly_damaging(0.858) TCGA-OR-A5JB-01 1 245582995 245582995 G C KIF26B Missense_Mutation p.V372L 0.75 tolerated(0.24) unknown(0) TCGA-OR-A5JB-01 1 247654468 247654468 C T OR2W5 RNA 0.73 TCGA-OR-A5JB-01 1 24786973 24786973 G C NIPAL3 Missense_Mutation p.A289P 0.41 tolerated(0.13) probably_damaging(0.949) TCGA-OR-A5JB-01 1 32209956 32209956 C T BAI2 Missense_Mutation p.D309N 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-OR-A5JB-01 1 38230726 38230726 C G EPHA10 Missense_Mutation p.A5P 0.39 tolerated(0.06) possibly_damaging(0.704) TCGA-OR-A5JB-01 1 40981323 40981323 C G EXO5 Silent p.V369V 0.25 TCGA-OR-A5JB-01 1 43739127 43739127 G C TMEM125 3'UTR 0.40 TCGA-OR-A5JB-01 1 55188440 55188440 C G TTC4 Missense_Mutation p.L188V 0.22 tolerated(0.26) benign(0.019) TCGA-OR-A5JB-01 1 67098763 67098763 G A SGIP1 Missense_Mutation p.D29N 0.46 deleterious(0.03) probably_damaging(0.98) TCGA-OR-A5JB-01 1 70385376 70385376 G T LRRC7 Intron 0.49 TCGA-OR-A5JB-01 1 71538205 71538205 C T ZRANB2 Missense_Mutation p.E110K 0.21 deleterious(0.05) possibly_damaging(0.594) TCGA-OR-A5JB-01 1 74929142 74929142 A T TNNI3K Missense_Mutation p.M778L 0.49 deleterious(0.01) possibly_damaging(0.856) TCGA-OR-A5JB-01 1 75038013 75038013 C G C1orf173 Missense_Mutation p.E1127D 0.31 deleterious(0.03) possibly_damaging(0.721) TCGA-OR-A5JB-01 1 75805310 75805310 G T SLC44A5 Missense_Mutation p.P20T 0.62 deleterious(0) possibly_damaging(0.492) TCGA-OR-A5JB-01 1 79129508 79129508 G C IFI44 3'UTR 0.09 TCGA-OR-A5JB-01 1 79385979 79385979 C A ELTD1 Missense_Mutation p.W450C 0.48 tolerated(1) probably_damaging(0.997) TCGA-OR-A5JB-01 1 79385980 79385980 C A ELTD1 Missense_Mutation p.W450L 0.48 tolerated(0.21) possibly_damaging(0.656) TCGA-OR-A5JB-01 1 98386497 98386497 G A DPYD 5'UTR 0.25 TCGA-OR-A5JB-01 20 34063418 34063418 G T CEP250 Nonsense_Mutation p.E555* 0.40 TCGA-OR-A5JB-01 20 37383613 37383613 G T ACTR5 Missense_Mutation p.W263C 0.31 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 20 43850726 43850726 T A SEMG2 Silent p.S151S 0.39 TCGA-OR-A5JB-01 20 47630130 47630130 G A ARFGEF2 Missense_Mutation p.M1316I 0.31 tolerated(0.34) benign(0.001) TCGA-OR-A5JB-01 20 47990374 47990374 G C KCNB1 Missense_Mutation p.R575G 0.29 tolerated_low_confidence(0.49) benign(0.005) TCGA-OR-A5JB-01 20 51872153 51872153 C A TSHZ2 Missense_Mutation p.S719Y 0.33 deleterious(0) possibly_damaging(0.526) TCGA-OR-A5JB-01 20 54824215 54824215 C A MC3R Missense_Mutation p.L106M 0.36 deleterious(0.04) probably_damaging(0.984) TCGA-OR-A5JB-01 20 55842128 55842128 C A BMP7 5'Flank 0.35 TCGA-OR-A5JB-01 20 57430199 57430199 C T GNAS Nonsense_Mutation p.Q627* 0.30 TCGA-OR-A5JB-01 20 57768876 57768876 T A ZNF831 Missense_Mutation p.D934E 0.33 tolerated(0.21) probably_damaging(0.991) TCGA-OR-A5JB-01 20 9360778 9360778 G T PLCB4 Missense_Mutation p.M274I 0.30 tolerated(0.15) benign(0.012) TCGA-OR-A5JB-01 21 30959761 30959761 G T GRIK1 Missense_Mutation p.P573H 0.32 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JB-01 21 31654682 31654682 G T KRTAP24-1 Missense_Mutation p.P190Q 0.43 deleterious(0) benign(0.438) TCGA-OR-A5JB-01 21 39817408 39817408 G C ERG Missense_Mutation p.P59R 0.34 deleterious(0.01) possibly_damaging(0.617) TCGA-OR-A5JB-01 21 45676028 45676028 G T DNMT3L Missense_Mutation p.L176I 0.11 tolerated(0.08) benign(0.27) TCGA-OR-A5JB-01 21 46032129 46032129 G A KRTAP10-8 Missense_Mutation p.G38S 0.34 tolerated(0.79) benign(0.061) TCGA-OR-A5JB-01 22 19752531 19752531 T C TBX1 Silent p.Y245Y 0.66 TCGA-OR-A5JB-01 22 25240890 25240890 G A SGSM1 Silent p.V30V 0.70 TCGA-OR-A5JB-01 22 38323452 38323452 G A MICALL1 Silent p.P500P 0.65 TCGA-OR-A5JB-01 22 38379397 38379397 G A SOX10 Missense_Mutation p.A132V 0.72 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JB-01 22 50901135 50901135 C A SBF1 Silent p.P660P 0.73 TCGA-OR-A5JB-01 2 101656658 101656658 G A TBC1D8 Silent p.I339I 0.31 TCGA-OR-A5JB-01 2 102998142 102998142 G A IL18R1 Missense_Mutation p.G230R 0.34 deleterious(0.02) probably_damaging(0.954) TCGA-OR-A5JB-01 2 108872131 108872131 A T SULT1C3 Missense_Mutation p.Y168F 0.18 tolerated(0.4) benign(0.229) TCGA-OR-A5JB-01 2 113887216 113887216 G T IL1RN Missense_Mutation p.L63F 0.32 deleterious(0) probably_damaging(0.993) TCGA-OR-A5JB-01 2 125262066 125262066 C A CNTNAP5 Missense_Mutation p.S419R 0.41 tolerated(0.3) benign(0.005) TCGA-OR-A5JB-01 2 125547619 125547619 G T CNTNAP5 Missense_Mutation p.G964C 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-OR-A5JB-01 2 125660460 125660460 G A CNTNAP5 Silent p.E1145E 0.38 TCGA-OR-A5JB-01 2 130877801 130877801 G T POTEF Missense_Mutation p.N96K 0.13 deleterious_low_confidence(0.01) benign(0.009) TCGA-OR-A5JB-01 2 131103419 131103419 G T IMP4 Missense_Mutation p.M169I 0.40 deleterious(0.01) benign(0.221) TCGA-OR-A5JB-01 2 135922249 135922249 T - RAB3GAP1 Frame_Shift_Del p.F898Lfs*2 0.10 TCGA-OR-A5JB-01 2 145153988 145153988 C A ZEB2 Nonsense_Mutation p.E1020* 0.28 TCGA-OR-A5JB-01 2 158626945 158626945 T A ACVR1 Missense_Mutation p.E242V 0.34 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 2 1652055 1652055 C A PXDN Missense_Mutation p.G1166V 0.47 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JB-01 2 166152582 166152582 C A SCN2A Silent p.P83P 0.40 TCGA-OR-A5JB-01 2 182374441 182374441 T A ITGA4 Silent p.G584G 0.17 TCGA-OR-A5JB-01 2 183088596 183088596 C T PDE1A Silent p.Q273Q 0.26 TCGA-OR-A5JB-01 2 183088641 183088641 A C PDE1A Missense_Mutation p.I258M 0.29 deleterious(0) possibly_damaging(0.721) TCGA-OR-A5JB-01 2 198257760 198257760 A G SF3B1 Missense_Mutation p.M1231T 0.34 tolerated(0.17) benign(0.027) TCGA-OR-A5JB-01 2 203972654 203972654 G A NBEAL1 Silent p.L535L 0.31 TCGA-OR-A5JB-01 2 204075696 204075696 C T NBEAL1 Missense_Mutation p.H2572Y 0.19 deleterious(0.04) possibly_damaging(0.609) TCGA-OR-A5JB-01 2 209028275 209028275 C A CRYGA Silent p.G2G 0.41 TCGA-OR-A5JB-01 2 211456582 211456582 C T CPS1 Silent p.I331I 0.36 TCGA-OR-A5JB-01 2 21231248 21231248 G T APOB Missense_Mutation p.S2831Y 0.43 probably_damaging(0.996) TCGA-OR-A5JB-01 2 216930060 216930060 C A PECR Silent p.T133T 0.31 TCGA-OR-A5JB-01 2 218937989 218937989 C G RUFY4 Missense_Mutation p.P137R 0.15 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 2 220332029 220332029 C T SPEG Silent p.G1005G 0.32 TCGA-OR-A5JB-01 2 225379488 225379488 T A CUL3 Missense_Mutation p.D127V 0.36 deleterious(0) probably_damaging(0.969) TCGA-OR-A5JB-01 2 226447396 226447396 C G NYAP2 Nonsense_Mutation p.Y421* 0.31 TCGA-OR-A5JB-01 2 228883966 228883966 G T SPHKAP Missense_Mutation p.A535E 0.29 tolerated(1) benign(0.001) TCGA-OR-A5JB-01 2 234878408 234878408 C G TRPM8 Missense_Mutation p.L699V 0.41 deleterious(0.03) possibly_damaging(0.744) TCGA-OR-A5JB-01 2 240016532 240016532 C A HDAC4 Intron 0.34 TCGA-OR-A5JB-01 2 33811716 33811716 T A FAM98A Silent p.I211I 0.38 TCGA-OR-A5JB-01 2 47641427 47641427 C T MSH2 Missense_Mutation p.S271F 0.45 deleterious(0) probably_damaging(0.964) TCGA-OR-A5JB-01 2 54858733 54858733 C G SPTBN1 Silent p.A1183A 0.33 TCGA-OR-A5JB-01 2 64111157 64111157 G A UGP2 Missense_Mutation p.E169K 0.40 tolerated(0.18) benign(0.013) TCGA-OR-A5JB-01 2 71039579 71039579 C A CLEC4F Missense_Mutation p.Q513H 0.35 deleterious(0) probably_damaging(0.984) TCGA-OR-A5JB-01 2 74686629 74686629 C G WBP1 Intron 0.26 TCGA-OR-A5JB-01 2 89416982 89416982 G T IGKV1-17 Missense_Mutation p.R68S 0.36 deleterious(0.02) benign(0.005) TCGA-OR-A5JB-01 2 90121688 90121688 G T IGKV1D-17 Missense_Mutation p.G11W 0.40 tolerated(0.07) benign(0.308) TCGA-OR-A5JB-01 2 90139442 90139442 T C IGKV1D-16 Silent p.Y71Y 0.42 TCGA-OR-A5JB-01 3 127391844 127391844 C G ABTB1 5'UTR 0.68 TCGA-OR-A5JB-01 3 142985443 142985443 T C SLC9A9 3'UTR 0.77 TCGA-OR-A5JB-01 3 150931660 150931660 T C P2RY14 Missense_Mutation p.M149V 0.07 tolerated(0.07) benign(0.076) TCGA-OR-A5JB-01 3 15778712 15778712 G C ANKRD28 Missense_Mutation p.S97C 0.52 deleterious(0) probably_damaging(0.985) TCGA-OR-A5JB-01 3 160396070 160396070 C T ARL14 3'UTR 0.38 TCGA-OR-A5JB-01 3 175293828 175293829 - A NAALADL2 Frame_Shift_Ins p.N553Kfs*2 0.13 TCGA-OR-A5JB-01 3 182607304 182607304 G T ATP11B Missense_Mutation p.G984W 0.76 tolerated(0.15) benign(0.002) TCGA-OR-A5JB-01 3 42739085 42739085 G T HHATL Silent p.A260A 0.53 TCGA-OR-A5JB-01 3 42908664 42908664 C A ACKR2 3'UTR 0.74 TCGA-OR-A5JB-01 3 49692898 49692898 G T BSN Missense_Mutation p.R1970M 0.56 unknown(0) TCGA-OR-A5JB-01 3 51430916 51430916 A T RBM15B Nonsense_Mutation p.K696* 0.60 TCGA-OR-A5JB-01 3 52430932 52430932 G T DNAH1 Missense_Mutation p.D3887Y 0.59 probably_damaging(1) TCGA-OR-A5JB-01 3 56992915 56992915 G C ARHGEF3 Missense_Mutation p.P22R 0.60 tolerated_low_confidence(0.34) benign(0.126) TCGA-OR-A5JB-01 3 64008128 64008128 T A PSMD6 Missense_Mutation p.M73L 0.54 tolerated(0.34) benign(0.019) TCGA-OR-A5JB-01 3 77666782 77666782 G T ROBO2 Missense_Mutation p.A1154S 0.57 tolerated(0.17) benign(0.364) TCGA-OR-A5JB-01 4 110448529 110448529 T C SEC24B Missense_Mutation p.L1006P 0.59 deleterious(0.04) probably_damaging(0.981) TCGA-OR-A5JB-01 4 111542464 111542464 C G PITX2 Missense_Mutation p.K89N 0.44 tolerated(0.24) probably_damaging(0.961) TCGA-OR-A5JB-01 4 114163347 114163347 G T ANK2 Missense_Mutation p.Q291H 0.52 probably_damaging(0.999) TCGA-OR-A5JB-01 4 123268929 123268929 G A KIAA1109 Missense_Mutation p.R4375Q 0.62 benign(0.001) TCGA-OR-A5JB-01 4 126238731 126238731 G T FAT4 Missense_Mutation p.A389S 0.57 benign(0.216) TCGA-OR-A5JB-01 4 15689683 15689683 G A FAM200B Silent p.L361L 0.48 TCGA-OR-A5JB-01 4 162954783 162954783 C A FSTL5 Missense_Mutation p.V52F 0.62 tolerated_low_confidence(0.73) benign(0.016) TCGA-OR-A5JB-01 4 185687098 185687098 C A ACSL1 Missense_Mutation p.A436S 0.58 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JB-01 4 20884247 20884247 C A KCNIP4 Silent p.S49S 0.52 TCGA-OR-A5JB-01 4 46252425 46252425 C G GABRA2 Missense_Mutation p.R419T 0.52 deleterious(0.03) possibly_damaging(0.809) TCGA-OR-A5JB-01 4 47765548 47765548 C G CORIN Silent p.T155T 0.55 TCGA-OR-A5JB-01 4 69094576 69094576 C A TMPRSS11B Missense_Mutation p.D325Y 0.52 deleterious(0) benign(0.003) TCGA-OR-A5JB-01 4 69817028 69817028 C A UGT2A3 Missense_Mutation p.V151L 0.49 tolerated(0.43) benign(0.119) TCGA-OR-A5JB-01 4 91389426 91389426 G T CCSER1 Missense_Mutation p.A549S 0.59 tolerated(0.36) probably_damaging(0.956) TCGA-OR-A5JB-01 4 96762414 96762414 A G PDHA2 Silent p.S371S 0.68 TCGA-OR-A5JB-01 5 101576467 101576467 G A SLCO4C1 Missense_Mutation p.R611W 0.38 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 5 140723866 140723866 G T PCDHGA3 Missense_Mutation p.R89M 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OR-A5JB-01 5 151231112 151231112 A - GLRA1 Frame_Shift_Del p.Y251Tfs*2 0.28 TCGA-OR-A5JB-01 5 156482398 156482398 T C HAVCR1 Missense_Mutation p.N65D 0.39 tolerated(1) benign(0.332) TCGA-OR-A5JB-01 5 176016115 176016115 C A CDHR2 Silent p.T980T 0.32 TCGA-OR-A5JB-01 5 176314086 176314086 G T HK3 Missense_Mutation p.Q592K 0.37 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JB-01 5 178413936 178413936 C A GRM6 Missense_Mutation p.G468V 0.39 deleterious(0.02) probably_damaging(0.951) TCGA-OR-A5JB-01 5 23527817 23527817 A T PRDM9 Missense_Mutation p.S874C 0.40 deleterious(0.02) possibly_damaging(0.866) TCGA-OR-A5JB-01 5 26881656 26881656 C A CDH9 Silent p.R653R 0.19 TCGA-OR-A5JB-01 5 32791320 32791320 C T NPR3 3'UTR 0.42 TCGA-OR-A5JB-01 5 38869147 38869147 A G OSMR Translation_Start_Site p.M1? 0.25 deleterious(0) unknown(0) TCGA-OR-A5JB-01 5 39118988 39118988 C T FYB Missense_Mutation p.E807K 0.16 tolerated(0.11) benign(0.091) TCGA-OR-A5JB-01 5 63256276 63256276 C A HTR1A 3'UTR 0.33 TCGA-OR-A5JB-01 5 73930600 73930600 C A ENC1 Missense_Mutation p.V571F 0.32 deleterious(0.01) benign(0.435) TCGA-OR-A5JB-01 5 74681788 74681788 G T COL4A3BP Silent p.G580G 0.32 TCGA-OR-A5JB-01 5 7802377 7802377 C T ADCY2 Missense_Mutation p.S892F 0.32 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 5 7832052 7832052 G A C5orf49 Missense_Mutation p.R119C 0.33 deleterious(0) probably_damaging(0.983) TCGA-OR-A5JB-01 5 94764306 94764306 G C FAM81B Splice_Site p.X219_splice 0.42 TCGA-OR-A5JB-01 6 117013269 117013269 G C KPNA5 Missense_Mutation p.E64Q 0.57 tolerated(0.36) possibly_damaging(0.521) TCGA-OR-A5JB-01 6 147123990 147123990 G A ADGB Intron 0.53 TCGA-OR-A5JB-01 6 151936589 151936589 G T CCDC170 Missense_Mutation p.L574F 0.40 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JB-01 6 152763327 152763327 C A SYNE1 Silent p.A1297A 0.69 TCGA-OR-A5JB-01 6 160169397 160169397 G A WTAP Missense_Mutation p.D150N 0.54 tolerated(0.06) benign(0.022) TCGA-OR-A5JB-01 6 1613504 1613504 C A FOXC1 3'UTR 0.29 TCGA-OR-A5JB-01 6 24523089 24523089 T C ALDH5A1 Missense_Mutation p.V383A 0.31 deleterious(0.01) possibly_damaging(0.613) TCGA-OR-A5JB-01 6 26020915 26020915 A G HIST1H3A Silent p.L66L 0.38 TCGA-OR-A5JB-01 6 26250440 26250440 G C HIST1H3F Missense_Mutation p.R132G 0.37 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-OR-A5JB-01 6 27806779 27806779 G A HIST1H2BN Missense_Mutation p.E114K 0.35 tolerated_low_confidence(0.07) benign(0.006) TCGA-OR-A5JB-01 6 28331530 28331530 C T ZKSCAN3 Missense_Mutation p.S232L 0.31 tolerated(0.13) possibly_damaging(0.752) TCGA-OR-A5JB-01 6 29692009 29692009 C T HLA-F Missense_Mutation p.R132C 0.35 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-OR-A5JB-01 6 3006730 3006730 G A NQO2 5'UTR 0.36 TCGA-OR-A5JB-01 6 31590581 31590581 G T PRRC2A Silent p.S5S 0.35 TCGA-OR-A5JB-01 6 32017977 32017977 G A TNXB 5'Flank 0.34 TCGA-OR-A5JB-01 6 32610520 32610520 C A HLA-DQA1 Silent p.S249S 0.38 TCGA-OR-A5JB-01 6 34838842 34838842 G A UHRF1BP1 Silent p.P1310P 0.40 TCGA-OR-A5JB-01 6 42156332 42156332 G C GUCA1B Silent p.L115L 0.36 TCGA-OR-A5JB-01 6 46623682 46623682 G A SLC25A27 Missense_Mutation p.G70E 0.47 deleterious(0) probably_damaging(0.986) TCGA-OR-A5JB-01 6 47791771 47791771 G T OPN5 3'UTR 0.30 TCGA-OR-A5JB-01 6 51920477 51920477 A G PKHD1 Missense_Mutation p.F582L 0.35 deleterious(0) possibly_damaging(0.682) TCGA-OR-A5JB-01 6 52052591 52052591 C T IL17A Missense_Mutation p.P73L 0.27 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 6 56336950 56336950 C A DST Missense_Mutation p.R4732S 0.36 benign(0.341) TCGA-OR-A5JB-01 7 114268677 114268677 C A FOXP2 Missense_Mutation p.S139Y 0.27 deleterious(0) unknown(0) TCGA-OR-A5JB-01 7 117232327 117232327 C G CFTR Silent p.L702L 0.38 TCGA-OR-A5JB-01 7 121942939 121942939 C A FEZF1 Missense_Mutation p.S328I 0.30 deleterious(0) possibly_damaging(0.713) TCGA-OR-A5JB-01 7 122759235 122759235 C A SLC13A1 Missense_Mutation p.W471L 0.35 tolerated(0.25) probably_damaging(1) TCGA-OR-A5JB-01 7 124503540 124503540 C A POT1 Missense_Mutation p.R137L 0.36 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 7 13971176 13971177 GG A ETV1 Frame_Shift_Del p.P251Lfs*4 0.29 TCGA-OR-A5JB-01 7 140453154 140453154 T C BRAF Missense_Mutation p.D594G 0.33 deleterious(0) possibly_damaging(0.846) TCGA-OR-A5JB-01 7 141635690 141635690 G A CLEC5A Missense_Mutation p.S90L 0.32 tolerated(0.36) benign(0.126) TCGA-OR-A5JB-01 7 142750104 142750104 G C OR6V1 Missense_Mutation p.V223L 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-OR-A5JB-01 7 149518553 149518553 C T SSPO RNA 0.41 TCGA-OR-A5JB-01 7 150085515 150085515 A G ZNF775 5'UTR 0.37 TCGA-OR-A5JB-01 7 19184760 19184760 C A FERD3L Nonsense_Mutation p.E76* 0.34 TCGA-OR-A5JB-01 7 40085455 40085455 G A CDK13 Missense_Mutation p.E792K 0.39 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JB-01 7 48068434 48068434 G A SUN3 Silent p.D34D 0.09 TCGA-OR-A5JB-01 7 48314045 48314045 C G ABCA13 Silent p.G1594G 0.39 TCGA-OR-A5JB-01 7 50444361 50444361 G T IKZF1 Missense_Mutation p.R97S 0.41 tolerated(0.79) benign(0.001) TCGA-OR-A5JB-01 7 54617995 54617995 A T VSTM2A Intron 0.33 TCGA-OR-A5JB-01 7 5965335 5965335 G A RSPH10B 3'Flank 0.23 TCGA-OR-A5JB-01 7 6022454 6022454 C T PMS2 Splice_Site p.X725_splice 0.28 TCGA-OR-A5JB-01 7 6565891 6565891 C T GRID2IP Missense_Mutation p.G295S 0.36 deleterious(0) probably_damaging(0.949) TCGA-OR-A5JB-01 7 75070785 75070785 C A POM121C 5'UTR 0.34 TCGA-OR-A5JB-01 7 82784132 82784132 T A PCLO Missense_Mutation p.T609S 0.33 unknown(0) TCGA-OR-A5JB-01 7 84685101 84685101 G T SEMA3D Missense_Mutation p.R265S 0.42 tolerated(0.2) probably_damaging(0.989) TCGA-OR-A5JB-01 7 87178755 87178755 A T ABCB1 Missense_Mutation p.L545Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 7 87400049 87400049 T A RUNDC3B Missense_Mutation p.L278H 0.43 deleterious(0) possibly_damaging(0.469) TCGA-OR-A5JB-01 7 89854425 89854425 C T STEAP2 Missense_Mutation p.P10L 0.32 tolerated(0.32) benign(0.346) TCGA-OR-A5JB-01 8 106813740 106813740 C A ZFPM2 Missense_Mutation p.P477Q 0.74 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JB-01 8 114449052 114449052 G T CSMD3 Missense_Mutation p.A11E 0.72 tolerated_low_confidence(0.09) benign(0) TCGA-OR-A5JB-01 8 145747994 145747994 C T LRRC24 Silent p.E469E 0.17 TCGA-OR-A5JB-01 8 2796075 2796075 G T CSMD1 3'Flank 0.52 TCGA-OR-A5JB-01 8 30601920 30601920 C T UBXN8 RNA 0.75 TCGA-OR-A5JB-01 8 35579843 35579843 C G UNC5D Silent p.G411G 0.58 TCGA-OR-A5JB-01 8 52321329 52321329 G T PXDNL Missense_Mutation p.P952H 0.56 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JB-01 8 53071652 53071652 G C ST18 Missense_Mutation p.P538A 0.48 tolerated(0.29) benign(0.167) TCGA-OR-A5JB-01 8 80677603 80677603 G A HEY1 Silent p.T249T 0.10 TCGA-OR-A5JB-01 9 103348271 103348271 G A MURC Silent p.R211R 0.21 TCGA-OR-A5JB-01 9 107298061 107298061 G T OR13C3 Missense_Mutation p.P345Q 0.27 deleterious_low_confidence(0.03) benign(0.01) TCGA-OR-A5JB-01 9 107457687 107457687 G T OR13D1 Missense_Mutation p.V329F 0.32 deleterious(0) probably_damaging(0.928) TCGA-OR-A5JB-01 9 111679945 111679945 G A IKBKAP Missense_Mutation p.S249L 0.48 deleterious(0) probably_damaging(0.973) TCGA-OR-A5JB-01 9 115336645 115336645 G A KIAA1958 Silent p.Q95Q 0.39 TCGA-OR-A5JB-01 9 120475158 120475158 C A TLR4 Missense_Mutation p.A251D 0.46 tolerated(0.09) benign(0.126) TCGA-OR-A5JB-01 9 124979518 124979518 C A LHX6 Missense_Mutation p.D171Y 0.13 deleterious(0) probably_damaging(1) TCGA-OR-A5JB-01 9 125281773 125281773 G T OR1J4 Missense_Mutation p.M118I 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5JB-01 9 125645584 125645584 C A RC3H2 Missense_Mutation p.V220L 0.36 deleterious(0) possibly_damaging(0.846) TCGA-OR-A5JB-01 9 126439003 126439003 C G DENND1A Missense_Mutation p.R123T 0.46 tolerated(0.06) benign(0.088) TCGA-OR-A5JB-01 9 139874677 139874677 C A PTGDS Missense_Mutation p.T164N 0.30 tolerated(0.05) possibly_damaging(0.547) TCGA-OR-A5JB-01 9 140150001 140150001 G A NELFB Missense_Mutation p.E14K 0.41 tolerated(0.29) benign(0.121) TCGA-OR-A5JB-01 9 17462995 17462995 A T CNTLN Nonsense_Mutation p.K1130* 0.30 TCGA-OR-A5JB-01 9 19300261 19300261 G T DENND4C Nonsense_Mutation p.E415* 0.38 TCGA-OR-A5JB-01 9 23693475 23693476 - T ELAVL2 Frame_Shift_Ins p.N241Kfs*18 0.25 TCGA-OR-A5JB-01 9 23701604 23701604 T A ELAVL2 Splice_Site p.X163_splice 0.42 TCGA-OR-A5JB-01 9 35366986 35366986 G A UNC13B Missense_Mutation p.E404K 0.22 tolerated_low_confidence(0.39) benign(0) TCGA-OR-A5JB-01 9 35684309 35684309 C T TPM2 Missense_Mutation p.E236K 0.30 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JB-01 9 37733737 37733737 C T FRMPD1 Missense_Mutation p.S378F 0.36 deleterious(0) probably_damaging(0.926) TCGA-OR-A5JB-01 9 43627291 43627291 G A SPATA31A6 Missense_Mutation p.L466F 0.71 tolerated(0.08) possibly_damaging(0.604) TCGA-OR-A5JB-01 9 4573909 4573909 A T SLC1A1 Missense_Mutation p.Y257F 0.14 deleterious(0.03) benign(0.042) TCGA-OR-A5JB-01 9 72132096 72132096 C G APBA1 Missense_Mutation p.E11Q 0.39 deleterious_low_confidence(0) benign(0.1) TCGA-OR-A5JB-01 9 84531806 84531806 C T SPATA31D5P RNA 0.31 TCGA-OR-A5JB-01 9 88601457 88601457 A T NAA35 Intron 0.23 TCGA-OR-A5JB-01 9 94456638 94456638 G A ROR2 3'UTR 0.32 TCGA-OR-A5JB-01 X 118774715 118774715 C G SEPT6 Missense_Mutation p.E243Q 0.77 tolerated(0.05) probably_damaging(0.998) TCGA-OR-A5JB-01 X 12734328 12734328 G A FRMPD4 Missense_Mutation p.D584N 0.08 tolerated(0.09) benign(0.002) TCGA-OR-A5JB-01 X 135431107 135431107 G A GPR112 Missense_Mutation p.E1748K 0.67 tolerated(0.17) benign(0.01) TCGA-OR-A5JB-01 X 146312342 146312342 G T MIR506 RNA 0.64 TCGA-OR-A5JB-01 X 299594 299594 C T PPP2R3B Silent p.L463L 0.58 TCGA-OR-A5JB-01 X 48378967 48378967 C T PORCN 3'UTR 0.70 TCGA-OR-A5JB-01 X 49083514 49083514 C A CACNA1F Missense_Mutation p.E398D 0.65 tolerated(0.15) possibly_damaging(0.777) TCGA-OR-A5JB-01 X 73962657 73962657 C A KIAA2022 Missense_Mutation p.A579S 0.77 tolerated(0.29) benign(0.005) TCGA-OR-A5JB-01 X 83124906 83124906 C T CYLC1 Silent p.S17S 0.57 TCGA-OR-A5JC-01 10 95537350 95537350 G T LGI1 Missense_Mutation p.R136L 0.33 deleterious(0.03) probably_damaging(0.958) TCGA-OR-A5JC-01 11 18257405 18257405 C A SAA4 Silent p.S23S 0.04 TCGA-OR-A5JC-01 12 123273380 123273380 C T CCDC62 Missense_Mutation p.R192C 0.24 deleterious(0.04) probably_damaging(0.923) TCGA-OR-A5JC-01 12 56504205 56504205 T A PA2G4 Missense_Mutation p.F218I 0.04 tolerated(0.07) probably_damaging(0.912) TCGA-OR-A5JC-01 14 20295677 20295677 C G OR4N2 Missense_Mutation p.Q24E 0.10 tolerated(0.2) benign(0.033) TCGA-OR-A5JC-01 14 20295722 20295722 C G OR4N2 Missense_Mutation p.L39V 0.11 tolerated(0.61) possibly_damaging(0.476) TCGA-OR-A5JC-01 14 20295790 20295790 C G OR4N2 Missense_Mutation p.F61L 0.13 deleterious(0.03) benign(0.021) TCGA-OR-A5JC-01 14 20295819 20295819 C G OR4N2 Missense_Mutation p.A71G 0.09 deleterious(0.05) benign(0.271) TCGA-OR-A5JC-01 14 23456399 23456399 C T C14orf93 3'UTR 0.10 TCGA-OR-A5JC-01 14 23456410 23456410 C T C14orf93 3'UTR 0.10 TCGA-OR-A5JC-01 14 23456429 23456429 C T C14orf93 Missense_Mutation p.E538K 0.13 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-OR-A5JC-01 14 24799400 24799400 C A ADCY4 Missense_Mutation p.M344I 0.17 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JC-01 14 45564512 45564512 G C PRPF39 Missense_Mutation p.V24L 0.21 tolerated_low_confidence(0.34) benign(0.01) TCGA-OR-A5JC-01 14 61917623 61917623 C G PRKCH Missense_Mutation p.P256A 0.15 deleterious(0.04) probably_damaging(0.968) TCGA-OR-A5JC-01 17 12626174 12626174 A G MYOCD Silent p.A88A 0.21 TCGA-OR-A5JC-01 17 9501596 9501596 C G WDR16 Missense_Mutation p.I194M 0.41 deleterious(0.04) benign(0.175) TCGA-OR-A5JC-01 18 12274230 12274230 G A CIDEA Missense_Mutation p.V157M 0.15 tolerated(0.62) possibly_damaging(0.457) TCGA-OR-A5JC-01 18 50976874 50976874 G A DCC Silent p.P1078P 0.61 TCGA-OR-A5JC-01 19 54210730 54210730 G C MIR520C RNA 0.12 TCGA-OR-A5JC-01 1 157069392 157069392 G T ETV3L 5'UTR 0.08 TCGA-OR-A5JC-01 20 61957493 61957493 G A COL20A1 Missense_Mutation p.G1150S 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5JC-01 20 9353694 9353694 C T PLCB4 Silent p.I229I 0.14 TCGA-OR-A5JC-01 2 37543587 37543587 A T PRKD3 Silent p.S27S 0.08 TCGA-OR-A5JC-01 3 109027035 109027035 T A DPPA2 Nonsense_Mutation p.R168* 0.24 TCGA-OR-A5JC-01 3 119306669 119306669 A G ADPRH Missense_Mutation p.T340A 0.06 tolerated(0.46) benign(0) TCGA-OR-A5JC-01 3 119462961 119462961 G A MAATS1 Missense_Mutation p.R607Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JC-01 3 150421573 150421573 T A FAM194A Missense_Mutation p.E38V 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-OR-A5JC-01 4 73956553 73956553 A G ANKRD17 Silent p.S2264S 0.29 TCGA-OR-A5JC-01 5 179249847 179249847 T G SQSTM1 Intron 0.19 TCGA-OR-A5JC-01 5 69372435 69372435 C A SMN2 Intron 0.26 TCGA-OR-A5JC-01 6 144878365 144878365 G C UTRN Missense_Mutation p.E2403Q 0.07 tolerated(0.25) benign(0.002) TCGA-OR-A5JC-01 6 160903734 160903734 G A LPAL2 RNA 0.46 TCGA-OR-A5JC-01 7 6777083 6777083 C A PMS2CL RNA 0.08 TCGA-OR-A5JC-01 7 99473846 99473846 T C OR2AE1 Missense_Mutation p.K271E 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-OR-A5JC-01 8 22548147 22548147 A T EGR3 Missense_Mutation p.C335S 0.38 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JC-01 8 3216707 3216707 G A CSMD1 Missense_Mutation p.R1091C 0.17 probably_damaging(0.969) TCGA-OR-A5JC-01 9 34976195 34976195 C T KIAA1045 Missense_Mutation p.T204M 0.27 tolerated(1) benign(0.006) TCGA-OR-A5JC-01 X 150884636 150884636 C A FATE1 Silent p.S15S 0.36 TCGA-OR-A5JC-01 X 150884637 150884637 C A FATE1 Missense_Mutation p.L16M 0.36 tolerated(0.62) benign(0.153) TCGA-OR-A5JC-01 X 1538001 1538001 A G ASMTL Missense_Mutation p.Y418H 0.05 tolerated(0.52) benign(0.008) TCGA-OR-A5JC-01 X 24517001 24517001 C T PDK3 Missense_Mutation p.P102S 0.37 tolerated(0.73) benign(0.001) TCGA-OR-A5JD-01 10 70644430 70644430 G A STOX1 Missense_Mutation p.C293Y 0.47 tolerated(0.06) possibly_damaging(0.51) TCGA-OR-A5JD-01 11 58034971 58034971 C T OR10W1 Silent p.P120P 0.08 TCGA-OR-A5JD-01 13 32810275 32810275 T C FRY Silent p.L1926L 0.07 TCGA-OR-A5JD-01 16 31477224 31477224 G - ARMC5 Frame_Shift_Del p.A641Pfs*2 0.25 TCGA-OR-A5JD-01 16 55601493 55601493 C T CAPNS2 3'UTR 0.36 TCGA-OR-A5JD-01 16 57793684 57793684 G A KIFC3 Missense_Mutation p.T811I 0.05 tolerated_low_confidence(0.12) benign(0.001) TCGA-OR-A5JD-01 16 58200519 58200519 G A CSNK2A2 Silent p.L266L 0.43 TCGA-OR-A5JD-01 16 84271024 84271024 C G KCNG4 Missense_Mutation p.W23S 0.30 tolerated_low_confidence(0.16) benign(0.001) TCGA-OR-A5JD-01 17 72356326 72356326 C T BTBD17 Silent p.A48A 0.41 TCGA-OR-A5JD-01 18 32886662 32886662 A G ZNF271 RNA 0.73 TCGA-OR-A5JD-01 19 44933163 44933163 C G ZNF229 Missense_Mutation p.R598T 0.05 deleterious(0) possibly_damaging(0.783) TCGA-OR-A5JD-01 19 5844265 5844265 C T FUT3 Missense_Mutation p.A196T 0.31 deleterious(0.05) benign(0.015) TCGA-OR-A5JD-01 1 237754280 237754280 G T RYR2 Missense_Mutation p.R1383L 0.08 benign(0.042) TCGA-OR-A5JD-01 1 52943488 52943488 A G ZCCHC11 Missense_Mutation p.F639L 0.16 deleterious(0) benign(0.328) TCGA-OR-A5JD-01 20 49620471 49620471 G A KCNG1 3'UTR 0.29 TCGA-OR-A5JD-01 22 39918189 39918189 C T ATF4 Missense_Mutation p.T213I 0.71 tolerated(0.06) benign(0.013) TCGA-OR-A5JD-01 2 177016766 177016766 C A HOXD4 Silent p.P135P 0.14 TCGA-OR-A5JD-01 2 217124357 217124357 C T MARCH4 Missense_Mutation p.R304Q 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5JD-01 2 233414422 233414422 G T TIGD1 Missense_Mutation p.F57L 0.07 tolerated(0.56) possibly_damaging(0.787) TCGA-OR-A5JD-01 2 241066032 241066032 G T MYEOV2 Missense_Mutation p.A236D 0.05 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5JD-01 3 132245070 132245070 C G DNAJC13 Missense_Mutation p.A2109G 0.38 tolerated(0.14) benign(0.143) TCGA-OR-A5JD-01 3 49211828 49211828 A G KLHDC8B Missense_Mutation p.Y178C 0.32 deleterious(0) probably_damaging(0.947) TCGA-OR-A5JD-01 3 52554839 52554839 G T STAB1 Missense_Mutation p.W1909L 0.20 tolerated(0.37) benign(0.001) TCGA-OR-A5JD-01 4 175158607 175158607 G A FBXO8 Missense_Mutation p.H306Y 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-OR-A5JD-01 4 56737029 56737029 C T EXOC1 Silent p.N263N 0.44 TCGA-OR-A5JD-01 5 37328505 37328505 C T NUP155 Missense_Mutation p.G611S 0.03 tolerated(0.28) benign(0) TCGA-OR-A5JD-01 6 109767928 109767928 C A MICAL1 Nonsense_Mutation p.E759* 0.04 TCGA-OR-A5JD-01 7 21892238 21892238 A T DNAH11 Missense_Mutation p.I3691L 0.03 benign(0.273) TCGA-OR-A5JD-01 7 99092230 99092230 T C ZNF394 Missense_Mutation p.K203R 0.51 tolerated(0.18) benign(0.011) TCGA-OR-A5JD-01 8 23429210 23429210 C T SLC25A37 Missense_Mutation p.R287W 0.40 deleterious(0) probably_damaging(0.987) TCGA-OR-A5JD-01 8 23429211 23429211 G T SLC25A37 Missense_Mutation p.R287L 0.40 deleterious(0.05) benign(0.414) TCGA-OR-A5JD-01 8 82667643 82667644 - A CHMP4C Frame_Shift_Ins p.E137Rfs*21 0.26 TCGA-OR-A5JD-01 9 136532055 136532055 C T SARDH Intron 0.42 TCGA-OR-A5JD-01 X 100808269 100808269 C T ARMCX1 Missense_Mutation p.A119V 0.32 tolerated_low_confidence(0.06) probably_damaging(0.955) TCGA-OR-A5JD-01 X 138901556 138901556 G C ATP11C Missense_Mutation p.L63V 0.27 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JD-01 X 153035385 153035385 G C PLXNB3 Missense_Mutation p.E563D 0.37 tolerated(0.06) possibly_damaging(0.889) TCGA-OR-A5JD-01 X 3229333 3229333 A T MXRA5 Missense_Mutation p.F2304Y 0.34 tolerated(0.12) probably_damaging(0.999) TCGA-OR-A5JE-01 10 102684506 102684506 C T FAM178A Missense_Mutation p.S583L 0.28 tolerated(0.57) benign(0.329) TCGA-OR-A5JE-01 10 127422004 127422004 C T EDRF1 Missense_Mutation p.P387L 0.18 deleterious(0) benign(0.133) TCGA-OR-A5JE-01 10 131565182 131565182 G T MGMT Missense_Mutation p.G213V 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-OR-A5JE-01 10 48382020 48382020 C T RBP3 Missense_Mutation p.G1210E 0.24 deleterious(0) probably_damaging(0.982) TCGA-OR-A5JE-01 10 50311823 50311823 T A VSTM4 Intron 0.23 TCGA-OR-A5JE-01 11 102737064 102737064 G C MMP12 RNA 0.04 TCGA-OR-A5JE-01 11 47505954 47505954 A T CELF1 Missense_Mutation p.D170E 0.24 deleterious(0) unknown(0) TCGA-OR-A5JE-01 11 55587904 55587904 A C OR5D18 Missense_Mutation p.N267H 0.27 deleterious(0.02) benign(0.055) TCGA-OR-A5JE-01 11 57414559 57414559 G T YPEL4 Missense_Mutation p.P8T 0.27 deleterious_low_confidence(0.03) benign(0.005) TCGA-OR-A5JE-01 11 65161744 65161744 G C FRMD8 Missense_Mutation p.E143D 0.20 tolerated(0.38) benign(0.009) TCGA-OR-A5JE-01 11 72578934 72578934 C T FCHSD2 Silent p.V428V 0.19 TCGA-OR-A5JE-01 11 92624213 92624213 G A FAT3 Silent p.V4568V 0.28 TCGA-OR-A5JE-01 12 104147000 104147001 - C STAB2 Frame_Shift_Ins p.T2196Hfs*15 0.13 TCGA-OR-A5JE-01 13 48953769 48953769 G T RB1 Nonsense_Mutation p.E458* 0.58 TCGA-OR-A5JE-01 14 23456607 23456607 G A C14orf93 Silent p.D478D 0.21 TCGA-OR-A5JE-01 14 30066912 30066912 C T PRKD1 Missense_Mutation p.R740Q 0.32 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JE-01 14 36155747 36155747 C - RALGAPA1 Splice_Site p.X853_splice 0.10 TCGA-OR-A5JE-01 14 51383442 51383442 T C PYGL Missense_Mutation p.Q337R 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5JE-01 15 24921531 24921531 G A NPAP1 Missense_Mutation p.D173N 0.15 tolerated(0.27) benign(0.259) TCGA-OR-A5JE-01 16 2293441 2293441 C T ECI1 Splice_Site p.X148_splice 0.25 TCGA-OR-A5JE-01 16 28878100 28878100 G C SH2B1 Missense_Mutation p.E229Q 0.17 tolerated(0.26) probably_damaging(0.993) TCGA-OR-A5JE-01 16 3293492 3293492 C G MEFV Missense_Mutation p.W665C 0.22 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JE-01 16 4310202 4310202 C A TFAP4 Silent p.V237V 0.27 TCGA-OR-A5JE-01 16 67709785 67709785 G T GFOD2 Missense_Mutation p.A144E 0.03 tolerated(1) benign(0) TCGA-OR-A5JE-01 17 38555090 38555090 C G TOP2A Missense_Mutation p.D1130H 0.24 tolerated(0.07) benign(0.158) TCGA-OR-A5JE-01 17 48277173 48277173 T C COL1A1 Missense_Mutation p.N80S 0.18 unknown(0) TCGA-OR-A5JE-01 17 62254810 62254810 C G TEX2 Missense_Mutation p.E823Q 0.22 tolerated(0.29) benign(0.059) TCGA-OR-A5JE-01 17 77769859 77769861 GAG - CBX8 In_Frame_Del p.L81del 0.21 TCGA-OR-A5JE-01 17 7794051 7794051 G A CHD3 Missense_Mutation p.G185R 0.52 probably_damaging(0.953) TCGA-OR-A5JE-01 19 10506791 10506791 C A CDC37 Missense_Mutation p.C64F 0.17 tolerated(0.06) benign(0.004) TCGA-OR-A5JE-01 19 36212357 36212357 G C KMT2B Missense_Mutation p.S703T 0.13 possibly_damaging(0.827) TCGA-OR-A5JE-01 19 36303397 36303397 G A PRODH2 Missense_Mutation p.S155F 0.15 tolerated(0.08) probably_damaging(0.984) TCGA-OR-A5JE-01 19 44419275 44419275 A C ZNF45 Missense_Mutation p.S105A 0.24 tolerated(0.12) benign(0.058) TCGA-OR-A5JE-01 19 53085521 53085521 A T ZNF701 Missense_Mutation p.H136L 0.18 deleterious(0.02) benign(0.007) TCGA-OR-A5JE-01 19 8130961 8130961 C T FBN3 Missense_Mutation p.V2758I 0.17 tolerated(0.55) benign(0.001) TCGA-OR-A5JE-01 19 8370031 8370031 G C CD320 Nonsense_Mutation p.S51* 0.30 TCGA-OR-A5JE-01 1 150902468 150902468 G C SETDB1 Missense_Mutation p.V96L 0.20 tolerated(0.12) benign(0.006) TCGA-OR-A5JE-01 1 153911506 153911506 C T DENND4B Missense_Mutation p.R612Q 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5JE-01 1 16959803 16959803 G A CROCCP2 RNA 0.24 TCGA-OR-A5JE-01 1 169762072 169762072 T C METTL18 Silent p.P255P 0.11 TCGA-OR-A5JE-01 1 226050027 226050027 G C TMEM63A Missense_Mutation p.R326G 0.19 tolerated(0.2) benign(0.004) TCGA-OR-A5JE-01 1 22903176 22903176 G C EPHA8 Missense_Mutation p.R209P 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5JE-01 1 244217637 244217637 C T ZBTB18 Silent p.A187A 0.24 TCGA-OR-A5JE-01 1 247875887 247875887 G T OR6F1 Silent p.T57T 0.09 TCGA-OR-A5JE-01 1 248845366 248845366 G A OR14I1 Silent p.I80I 0.17 TCGA-OR-A5JE-01 1 38192880 38192880 C T EPHA10 Missense_Mutation p.A556T 0.25 tolerated(0.57) benign(0.005) TCGA-OR-A5JE-01 20 43836470 43836470 G A SEMG1 Missense_Mutation p.V178I 0.34 tolerated(0.41) benign(0.343) TCGA-OR-A5JE-01 20 57485075 57485075 T C GNAS Silent p.A946A 0.19 TCGA-OR-A5JE-01 20 57485076 57485076 G T GNAS Missense_Mutation p.G947W 0.19 deleterious(0) probably_damaging(1) TCGA-OR-A5JE-01 2 135988259 135988259 G C ZRANB3 Missense_Mutation p.T593R 0.19 tolerated(0.44) benign(0) TCGA-OR-A5JE-01 2 179446654 179446654 C A TTN Missense_Mutation p.A22148S 0.28 TCGA-OR-A5JE-01 2 190595328 190595328 G T ANKAR Splice_Site p.X1100_splice 0.18 TCGA-OR-A5JE-01 2 215847044 215847044 G T ABCA12 Silent p.G1482G 0.17 TCGA-OR-A5JE-01 2 223920148 223920148 C T KCNE4 3'UTR 0.21 TCGA-OR-A5JE-01 3 134967302 134967302 A G EPHB1 Missense_Mutation p.M881V 0.22 deleterious(0.02) benign(0.175) TCGA-OR-A5JE-01 3 155611467 155611467 C T GMPS Missense_Mutation p.A63V 0.28 tolerated(0.37) benign(0.006) TCGA-OR-A5JE-01 4 36296567 36296567 C G DTHD1 Missense_Mutation p.P392A 0.29 deleterious(0.02) benign(0.091) TCGA-OR-A5JE-01 5 10992734 10992734 C T CTNND2 Missense_Mutation p.R1047Q 0.23 deleterious(0.05) possibly_damaging(0.534) TCGA-OR-A5JE-01 5 140215891 140215891 C T PCDHA7 Silent p.D641D 0.20 TCGA-OR-A5JE-01 5 61779887 61779887 A C IPO11 Missense_Mutation p.T398P 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-OR-A5JE-01 6 114292243 114292243 G A HDAC2 5'UTR 0.17 TCGA-OR-A5JE-01 6 52268605 52268605 A C PAQR8 Missense_Mutation p.K198N 0.21 deleterious(0.03) possibly_damaging(0.863) TCGA-OR-A5JE-01 6 66053948 66053948 G A EYS Missense_Mutation p.H528Y 0.19 tolerated(1) benign(0.002) TCGA-OR-A5JE-01 6 96653847 96653847 G A FUT9 3'UTR 0.18 TCGA-OR-A5JE-01 7 27880467 27880467 C T JAZF1 Silent p.E135E 0.21 TCGA-OR-A5JE-01 7 98254231 98254249 CAGGCAATAGCGCCTTTAA - NPTX2 Splice_Site p.X215_splice 0.24 TCGA-OR-A5JE-01 9 139990835 139990835 A G MAN1B1 Silent p.T204T 0.24 TCGA-OR-A5JE-01 9 141070946 141070946 G A TUBBP5 RNA 0.14 TCGA-OR-A5JE-01 9 14720202 14720202 G T CER1 Silent p.I230I 0.22 TCGA-OR-A5JE-01 9 32785562 32785562 A G TMEM215 3'UTR 0.05 TCGA-OR-A5JE-01 X 104440271 104440271 C T IL1RAPL2 Missense_Mutation p.T66M 0.42 tolerated(0.3) benign(0.013) TCGA-OR-A5JE-01 X 150348927 150348927 C G GPR50 Missense_Mutation p.A291G 0.07 deleterious(0.01) possibly_damaging(0.763) TCGA-OR-A5JF-01 10 112356159 112356159 A G SMC3 Missense_Mutation p.D656G 0.18 deleterious(0) probably_damaging(0.926) TCGA-OR-A5JF-01 10 134623954 134623954 C T TTC40 Silent p.A2541A 0.53 TCGA-OR-A5JF-01 10 61819102 61819102 C T ANK3 Missense_Mutation p.D4228N 0.45 benign(0.339) TCGA-OR-A5JF-01 10 72489935 72489935 C G ADAMTS14 Silent p.R344R 0.53 TCGA-OR-A5JF-01 11 57373627 57373627 T G SERPING1 Missense_Mutation p.L277R 0.74 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 11 62472840 62472840 A G BSCL2 Missense_Mutation p.Y113H 0.06 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 11 67262351 67262351 T C PITPNM1 Missense_Mutation p.K903R 0.06 deleterious(0.03) benign(0.012) TCGA-OR-A5JF-01 12 10223960 10223960 G T CLEC1A Missense_Mutation p.P272H 0.44 tolerated_low_confidence(0.07) benign(0.237) TCGA-OR-A5JF-01 12 110226237 110226237 A G TRPV4 Missense_Mutation p.S726P 0.21 deleterious(0) probably_damaging(0.993) TCGA-OR-A5JF-01 12 110960124 110960124 G C RAD9B Missense_Mutation p.A345P 0.11 tolerated(0.29) benign(0.001) TCGA-OR-A5JF-01 12 120531050 120531050 A C CCDC64 3'UTR 0.17 TCGA-OR-A5JF-01 12 13232844 13232844 G A KIAA1467 Silent p.E588E 0.47 TCGA-OR-A5JF-01 12 3921573 3921573 T C PARP11 Missense_Mutation p.S245G 0.49 tolerated(0.4) possibly_damaging(0.798) TCGA-OR-A5JF-01 12 48181875 48181875 G A HDAC7 Missense_Mutation p.R770C 0.37 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 13 108862298 108862298 G C LIG4 Missense_Mutation p.P440R 0.69 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JF-01 13 25341412 25341412 C T RNF17 Missense_Mutation p.H45Y 0.80 tolerated_low_confidence(0.07) possibly_damaging(0.775) TCGA-OR-A5JF-01 13 29599148 29599148 C A MTUS2 Missense_Mutation p.Q115K 0.30 tolerated(0.29) benign(0.051) TCGA-OR-A5JF-01 13 33716447 33716447 C G STARD13 Missense_Mutation p.K129N 0.72 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JF-01 14 106725444 106725444 G T IGHV3-23 Silent p.S36S 0.47 TCGA-OR-A5JF-01 14 55203812 55203812 A T SAMD4A Silent p.P262P 0.70 TCGA-OR-A5JF-01 14 77293024 77293024 A C C14orf166B Intron 0.60 TCGA-OR-A5JF-01 14 88652422 88652422 G T KCNK10 Silent p.L363L 0.71 TCGA-OR-A5JF-01 15 33025091 33025091 C T GREM1 3'UTR 0.71 TCGA-OR-A5JF-01 15 49048340 49048340 G C CEP152 Missense_Mutation p.I1035M 0.11 tolerated(0.14) benign(0.097) TCGA-OR-A5JF-01 15 62170946 62170946 C A VPS13C Splice_Site p.X3335_splice 0.35 TCGA-OR-A5JF-01 16 12996322 12996322 C G SHISA9 Missense_Mutation p.P134R 0.19 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JF-01 16 30002486 30002486 C G TAOK2 3'Flank 0.35 TCGA-OR-A5JF-01 16 3293669 3293669 G C MEFV Silent p.T606T 0.45 TCGA-OR-A5JF-01 16 53692791 53692791 C T RPGRIP1L Splice_Site p.X415_splice 0.09 TCGA-OR-A5JF-01 16 84402268 84402268 C T ATP2C2 Missense_Mutation p.S16L 0.16 tolerated_low_confidence(0.65) benign(0) TCGA-OR-A5JF-01 16 85838589 85838589 T G COX4I1 Missense_Mutation p.D40E 0.42 deleterious(0.05) possibly_damaging(0.884) TCGA-OR-A5JF-01 17 47780364 47780364 A T SLC35B1 Missense_Mutation p.F258I 0.78 deleterious(0) probably_damaging(0.927) TCGA-OR-A5JF-01 18 28654754 28654754 C A DSC2 Missense_Mutation p.V595F 0.70 tolerated(0.31) benign(0.184) TCGA-OR-A5JF-01 19 1993163 1993163 C T BTBD2 Silent p.S180S 0.12 TCGA-OR-A5JF-01 19 2290685 2290685 A G LINGO3 Missense_Mutation p.V364A 0.29 deleterious(0.05) benign(0.005) TCGA-OR-A5JF-01 19 36290931 36290931 T A PRODH2 3'UTR 0.07 TCGA-OR-A5JF-01 19 5455609 5455609 G A ZNRF4 Missense_Mutation p.R36H 0.10 tolerated_low_confidence(0.23) benign(0) TCGA-OR-A5JF-01 19 58258343 58258343 C G ZNF776 5'UTR 0.42 TCGA-OR-A5JF-01 1 100376292 100376292 A C AGL Missense_Mutation p.D1242A 0.68 deleterious(0.02) benign(0.426) TCGA-OR-A5JF-01 1 108291635 108291635 G C VAV3 Missense_Mutation p.T486R 0.17 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 1 110884071 110884071 G C RBM15 Missense_Mutation p.D682H 0.72 deleterious(0.02) possibly_damaging(0.533) TCGA-OR-A5JF-01 1 152187065 152187065 C G HRNR Missense_Mutation p.S2347T 0.02 unknown(0) TCGA-OR-A5JF-01 1 152749023 152749023 G C LCE1F Missense_Mutation p.C59S 0.42 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5JF-01 1 92789534 92789534 A T RPAP2 Missense_Mutation p.S353C 0.79 deleterious(0.03) benign(0.376) TCGA-OR-A5JF-01 20 34240369 34240369 G A RBM12 3'UTR 0.37 TCGA-OR-A5JF-01 20 34242149 34242149 G C RBM12 Missense_Mutation p.L366V 0.15 deleterious(0.04) possibly_damaging(0.72) TCGA-OR-A5JF-01 20 36641454 36641454 G T TTI1 Silent p.I255I 0.21 TCGA-OR-A5JF-01 20 39831045 39831045 C G ZHX3 Missense_Mutation p.G838R 0.44 tolerated(0.1) probably_damaging(0.98) TCGA-OR-A5JF-01 20 43836226 43836226 A G SEMG1 Silent p.S96S 0.48 TCGA-OR-A5JF-01 20 46290611 46290611 C G SULF2 Missense_Mutation p.R800S 0.38 deleterious(0.02) possibly_damaging(0.728) TCGA-OR-A5JF-01 21 10914373 10914373 C T TPTE Missense_Mutation p.G449E 0.07 tolerated(0.55) benign(0.006) TCGA-OR-A5JF-01 21 43547814 43547814 T C UMODL1 Missense_Mutation p.I1316T 0.83 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JF-01 22 42262853 42262854 - T SREBF2 Frame_Shift_Ins p.N37* 0.20 TCGA-OR-A5JF-01 2 17963223 17963223 G A GEN1 3'UTR 0.33 TCGA-OR-A5JF-01 2 187373328 187373328 G T ZC3H15 Missense_Mutation p.L383F 0.70 tolerated(0.72) benign(0.352) TCGA-OR-A5JF-01 2 217285234 217285234 C T SMARCAL1 Nonsense_Mutation p.Q359* 0.77 TCGA-OR-A5JF-01 2 39050210 39050210 C A DHX57 Missense_Mutation p.M1072I 0.29 tolerated(0.21) benign(0.344) TCGA-OR-A5JF-01 2 5836345 5836345 G T SOX11 3'UTR 0.36 TCGA-OR-A5JF-01 3 134089857 134089857 C A AMOTL2 Missense_Mutation p.S140I 0.22 tolerated(0.13) benign(0.093) TCGA-OR-A5JF-01 3 174814615 174814615 C T NAALADL2 Nonsense_Mutation p.Q27* 0.78 TCGA-OR-A5JF-01 3 51457650 51457650 G C VPRBP Missense_Mutation p.S496C 0.67 tolerated(0.14) possibly_damaging(0.855) TCGA-OR-A5JF-01 4 178231021 178231021 T G NEIL3 5'UTR 0.41 TCGA-OR-A5JF-01 4 30725207 30725207 C A PCDH7 Silent p.P721P 0.42 TCGA-OR-A5JF-01 4 82366716 82366716 T G RASGEF1B Missense_Mutation p.N298H 0.41 deleterious(0) probably_damaging(0.937) TCGA-OR-A5JF-01 5 140764326 140764326 G T PCDHGA7 Silent p.G620G 0.16 TCGA-OR-A5JF-01 5 180048668 180048668 G T FLT4 Missense_Mutation p.R632S 0.42 tolerated(0.28) possibly_damaging(0.46) TCGA-OR-A5JF-01 5 66429340 66429340 A G MAST4 Splice_Site p.X698_splice 0.17 TCGA-OR-A5JF-01 5 76717663 76717663 T G PDE8B Missense_Mutation p.C756W 0.13 deleterious(0.03) possibly_damaging(0.895) TCGA-OR-A5JF-01 6 118015275 118015275 G C NUS1 Missense_Mutation p.C208S 0.07 tolerated(0.06) benign(0.425) TCGA-OR-A5JF-01 6 88229355 88229355 C G RARS2 Missense_Mutation p.D395H 0.71 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 7 122130227 122130227 C G CADPS2 Missense_Mutation p.R587T 0.47 deleterious(0.01) benign(0.066) TCGA-OR-A5JF-01 7 12664641 12664641 G C SCIN Missense_Mutation p.D256H 0.05 deleterious(0) probably_damaging(0.982) TCGA-OR-A5JF-01 7 38500996 38500996 G A AMPH Missense_Mutation p.P302S 0.22 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JF-01 7 94055328 94055328 G C COL1A2 Missense_Mutation p.G988R 0.37 unknown(0) TCGA-OR-A5JF-01 7 97821142 97821142 G A LMTK2 Silent p.L455L 0.17 TCGA-OR-A5JF-01 8 118816990 118816990 T C EXT1 Missense_Mutation p.K676E 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 8 70533313 70533313 A T SULF1 Missense_Mutation p.H474L 0.14 tolerated(0.11) benign(0.216) TCGA-OR-A5JF-01 8 70533314 70533314 C T SULF1 Silent p.H474H 0.15 TCGA-OR-A5JF-01 9 117053185 117053185 C T COL27A1 Silent p.P1488P 0.43 TCGA-OR-A5JF-01 9 120475205 120475205 G A TLR4 Missense_Mutation p.G267R 0.26 tolerated(1) benign(0) TCGA-OR-A5JF-01 9 134351358 134351358 C T PRRC2B Missense_Mutation p.S1281F 0.17 tolerated(0.06) benign(0.418) TCGA-OR-A5JF-01 9 135947102 135947102 C T CEL Missense_Mutation p.P741L 0.38 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-OR-A5JF-01 9 137325961 137325961 C G RXRA Silent p.L383L 0.36 TCGA-OR-A5JF-01 9 139818401 139818401 G C TRAF2 Silent p.V412V 0.42 TCGA-OR-A5JF-01 9 23765006 23765006 C T ELAVL2 Intron 0.22 TCGA-OR-A5JF-01 9 33797865 33797865 T A PRSS3 Missense_Mutation p.V137D 0.41 deleterious(0.04) possibly_damaging(0.689) TCGA-OR-A5JF-01 X 101139569 101139569 A G ZMAT1 Missense_Mutation p.F277S 0.16 tolerated(0.1) benign(0.261) TCGA-OR-A5JF-01 X 110973752 110973752 G C ALG13 Splice_Site p.X801_splice 0.21 TCGA-OR-A5JF-01 X 135303014 135303014 C T MAP7D3 Missense_Mutation p.R799H 0.35 tolerated(0.9) benign(0.002) TCGA-OR-A5JF-01 X 23754092 23754092 C T ACOT9 Missense_Mutation p.G21E 0.43 tolerated_low_confidence(0.08) benign(0.206) TCGA-OR-A5JF-01 X 40496395 40496395 C T CXorf38 Missense_Mutation p.R162H 0.37 deleterious(0) probably_damaging(1) TCGA-OR-A5JF-01 X 55515272 55515272 G A USP51 Missense_Mutation p.A34V 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-OR-A5JF-01 X 70674672 70674672 C A TAF1 Missense_Mutation p.L1655M 0.05 deleterious(0.02) probably_damaging(0.918) TCGA-OR-A5JF-01 X 76875873 76875873 G T ATRX Missense_Mutation p.N1754K 0.36 probably_damaging(1) TCGA-OR-A5JF-01 X 91090885 91090885 C A PCDH11X Missense_Mutation p.L128M 0.18 tolerated(0.12) benign(0.175) TCGA-OR-A5JG-01 10 104183193 104183193 C T CUEDC2 Missense_Mutation p.R285H 0.05 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JG-01 11 21596620 21596620 G A NELL1 3'UTR 0.24 TCGA-OR-A5JG-01 12 13717131 13717131 T A GRIN2B Missense_Mutation p.Q1014L 0.37 deleterious(0.01) probably_damaging(0.962) TCGA-OR-A5JG-01 12 21960411 21960411 C T ABCC9 Missense_Mutation p.A1440T 0.55 tolerated(0.31) benign(0.168) TCGA-OR-A5JG-01 12 69233423 69233423 G C MDM2 Missense_Mutation p.E430Q 0.49 tolerated(0.05) probably_damaging(0.986) TCGA-OR-A5JG-01 12 98849194 98849194 T A SLC9A7P1 RNA 0.52 TCGA-OR-A5JG-01 13 50588527 50588530 ATAT - TRIM13 3'Flank 0.81 TCGA-OR-A5JG-01 14 57272121 57272121 G T OTX2 Silent p.T18T 0.69 TCGA-OR-A5JG-01 16 28842312 28842312 C T ATXN2L Missense_Mutation p.R414W 0.40 deleterious(0) possibly_damaging(0.855) TCGA-OR-A5JG-01 16 3304219 3304219 C T MEFV Silent p.P283P 0.52 TCGA-OR-A5JG-01 17 29187537 29187537 G A ATAD5 Missense_Mutation p.E1015K 0.20 deleterious(0.01) benign(0.18) TCGA-OR-A5JG-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.85 TCGA-OR-A5JG-01 19 44934458 44934458 G A ZNF229 Silent p.I166I 0.56 TCGA-OR-A5JG-01 19 45260388 45260388 G A BCL3 Missense_Mutation p.A212T 0.51 deleterious(0.03) possibly_damaging(0.833) TCGA-OR-A5JG-01 19 55758252 55758252 G A PPP6R1 Missense_Mutation p.R74C 0.41 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JG-01 19 58132312 58132312 A G ZNF134 Silent p.L275L 0.44 TCGA-OR-A5JG-01 19 9057171 9057171 T C MUC16 Missense_Mutation p.D10092G 0.50 benign(0.007) TCGA-OR-A5JG-01 1 17318535 17318535 G A ATP13A2 Missense_Mutation p.P699S 0.91 tolerated(0.45) benign(0.001) TCGA-OR-A5JG-01 20 17445920 17445920 C G PCSK2 Intron 0.50 TCGA-OR-A5JG-01 20 3209573 3209573 C G SLC4A11 Missense_Mutation p.W744C 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5JG-01 20 61048581 61048581 C T GATA5 Missense_Mutation p.G193R 0.31 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JG-01 21 34926429 34926430 - TT SON Frame_Shift_Ins p.L1632Ffs*2 0.09 TCGA-OR-A5JG-01 21 42749766 42749766 C T MX2 Silent p.C100C 0.14 TCGA-OR-A5JG-01 21 46640924 46640924 G A ADARB1 Missense_Mutation p.G681S 0.24 tolerated(0.31) possibly_damaging(0.817) TCGA-OR-A5JG-01 22 31741420 31741420 C T PATZ1 Missense_Mutation p.A57T 0.14 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5JG-01 22 42271554 42271554 A - SREBF2 Frame_Shift_Del p.K405Rfs*5 0.46 TCGA-OR-A5JG-01 2 46987103 46987103 G C SOCS5 Missense_Mutation p.R478S 0.84 deleterious(0) possibly_damaging(0.838) TCGA-OR-A5JG-01 4 100512918 100512918 A G MTTP Silent p.L243L 0.80 TCGA-OR-A5JG-01 4 123372913 123372913 C T IL2 Silent p.L152L 0.85 TCGA-OR-A5JG-01 4 30724413 30724413 G A PCDH7 Missense_Mutation p.V457M 0.08 tolerated(0.13) possibly_damaging(0.62) TCGA-OR-A5JG-01 5 79733160 79733160 A G ZFYVE16 Missense_Mutation p.Y219C 0.35 tolerated(0.45) benign(0) TCGA-OR-A5JG-01 7 103183277 103183277 G C RELN Missense_Mutation p.S2191C 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5JG-01 7 11151041 11151041 A G PHF14 Missense_Mutation p.K622E 0.43 deleterious(0) probably_damaging(0.996) TCGA-OR-A5JG-01 7 143175367 143175367 G T TAS2R41 Silent p.L134L 0.46 TCGA-OR-A5JG-01 7 57529562 57529562 A T ZNF716 Missense_Mutation p.K465N 0.07 deleterious(0.02) benign(0.197) TCGA-OR-A5JG-01 8 23060257 23060257 G A TNFRSF10A Missense_Mutation p.H141Y 0.04 deleterious(0.03) benign(0.002) TCGA-OR-A5JG-01 8 61766037 61766037 G A CHD7 Silent p.S2251S 0.84 TCGA-OR-A5JG-01 9 108120655 108120655 G A SLC44A1 Missense_Mutation p.R234K 0.51 deleterious(0.02) benign(0.257) TCGA-OR-A5JG-01 X 104463887 104463887 G A TEX13A Missense_Mutation p.P330L 0.86 tolerated(0.05) benign(0.005) TCGA-OR-A5JG-01 X 149678251 149678251 G C MAMLD1 Missense_Mutation p.G621A 0.83 tolerated(0.05) benign(0.053) TCGA-OR-A5JH-01 11 55541042 55541042 G A OR5D13 Silent p.G43G 0.04 TCGA-OR-A5JH-01 11 64054094 64054094 T A GPR137 Missense_Mutation p.L91Q 0.35 deleterious(0) probably_damaging(0.955) TCGA-OR-A5JH-01 16 30674098 30674098 C A FBRS Missense_Mutation p.Q325K 0.36 unknown(0) TCGA-OR-A5JH-01 19 44079720 44079733 AAGCGCGCGAGGCT - XRCC1 5'UTR 0.18 TCGA-OR-A5JH-01 1 154542804 154542804 C A CHRNB2 Missense_Mutation p.S109Y 0.11 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JH-01 22 35480438 35480438 T G ISX Silent p.A148A 0.07 TCGA-OR-A5JH-01 3 102171984 102171984 G T ZPLD1 Splice_Site p.X125_splice 0.10 TCGA-OR-A5JH-01 6 85446964 85446964 G T TBX18 Silent p.A421A 0.05 TCGA-OR-A5JH-01 8 103283450 103283450 G A UBR5 Nonsense_Mutation p.R2333* 0.15 TCGA-OR-A5JH-01 X 101971094 101971094 G T GPRASP2 Missense_Mutation p.A433S 0.06 tolerated(0.38) benign(0.171) TCGA-OR-A5JH-01 X 153032639 153032639 G A PLXNB3 Silent p.L142L 0.26 TCGA-OR-A5JI-01 10 13152419 13152419 T A OPTN Missense_Mutation p.N104K 0.10 deleterious(0.01) benign(0.065) TCGA-OR-A5JI-01 10 15256461 15256461 G C FAM171A1 Missense_Mutation p.P376A 0.12 tolerated(0.26) benign(0.004) TCGA-OR-A5JI-01 11 108382838 108382838 G - EXPH5 Frame_Shift_Del p.S1133Qfs*11 0.20 TCGA-OR-A5JI-01 11 113140858 113140858 G T NCAM1 Intron 0.25 TCGA-OR-A5JI-01 15 91150615 91150615 A G CRTC3 Missense_Mutation p.N161S 0.17 tolerated(0.43) probably_damaging(0.98) TCGA-OR-A5JI-01 19 38696869 38696869 A G SIPA1L3 Missense_Mutation p.K1779E 0.12 tolerated_low_confidence(0.26) benign(0.006) TCGA-OR-A5JI-01 1 161192161 161192161 C T AL590714.1 Silent p.G32G 0.32 TCGA-OR-A5JI-01 20 60427870 60427870 A G CDH4 Missense_Mutation p.I265V 0.15 tolerated(0.08) possibly_damaging(0.755) TCGA-OR-A5JI-01 21 40795162 40795162 G T LCA5L Missense_Mutation p.Q193K 0.15 tolerated(0.11) benign(0.104) TCGA-OR-A5JI-01 22 25023359 25023359 C T GGT1 Intron 0.04 TCGA-OR-A5JI-01 2 55074739 55074740 - T EML6 Frame_Shift_Ins p.I391Hfs*23 0.18 TCGA-OR-A5JI-01 4 88996821 88996821 A G PKD2 Missense_Mutation p.N961S 0.22 tolerated_low_confidence(0.05) benign(0.001) TCGA-OR-A5JI-01 5 43161449 43161449 C T ZNF131 Missense_Mutation p.S157L 0.22 deleterious(0.01) benign(0.085) TCGA-OR-A5JI-01 6 47976553 47976553 C T PTCHD4 Missense_Mutation p.V242M 0.24 tolerated(0.13) benign(0.007) TCGA-OR-A5JI-01 X 48123217 48123217 A T SSX1 Missense_Mutation p.I111F 0.14 deleterious(0) possibly_damaging(0.713) TCGA-OR-A5JJ-01 10 11997479 11997479 G T UPF2 Missense_Mutation p.R868S 0.12 deleterious(0) probably_damaging(1) TCGA-OR-A5JJ-01 12 53663137 53663137 C T ESPL1 Silent p.P137P 0.47 TCGA-OR-A5JJ-01 12 82147977 82147977 C T PPFIA2 Silent p.T8T 0.39 TCGA-OR-A5JJ-01 14 104573592 104573592 A C ASPG Missense_Mutation p.E448A 0.06 tolerated(0.71) benign(0.006) TCGA-OR-A5JJ-01 15 59225789 59225793 GGCAG - SLTM 5'UTR 0.79 TCGA-OR-A5JJ-01 17 18168068 18168068 G T MIEF2 Missense_Mutation p.G463V 0.95 tolerated(0.37) benign(0.079) TCGA-OR-A5JJ-01 17 7577114 7577114 C G TP53 Missense_Mutation p.C275S 0.78 deleterious(0) probably_damaging(0.955) TCGA-OR-A5JJ-01 18 31323005 31323005 C T ASXL3 Missense_Mutation p.R1065W 0.82 probably_damaging(0.999) TCGA-OR-A5JJ-01 1 151503099 151503099 G A CGN Silent p.Q816Q 0.75 TCGA-OR-A5JJ-01 1 186031090 186031090 G A HMCN1 Missense_Mutation p.V2474I 0.89 benign(0.032) TCGA-OR-A5JJ-01 1 40758252 40758252 G A ZMPSTE24 Missense_Mutation p.V447I 0.73 tolerated(0.24) benign(0.058) TCGA-OR-A5JJ-01 20 34129865 34129865 C T ERGIC3 Silent p.L7L 0.40 TCGA-OR-A5JJ-01 20 47855847 47855847 G C DDX27 Missense_Mutation p.Q654H 0.41 deleterious(0) probably_damaging(0.928) TCGA-OR-A5JJ-01 2 27276815 27276815 C T AGBL5 Missense_Mutation p.R147C 0.06 deleterious(0) probably_damaging(0.917) TCGA-OR-A5JJ-01 2 33036125 33036125 G T TTC27 Missense_Mutation p.G678V 0.06 deleterious(0.01) benign(0.439) TCGA-OR-A5JJ-01 2 60688336 60688336 T C BCL11A Missense_Mutation p.K571E 0.94 deleterious(0.04) benign(0.292) TCGA-OR-A5JJ-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.83 deleterious(0) probably_damaging(0.954) TCGA-OR-A5JJ-01 3 97596823 97596823 C T CRYBG3 Missense_Mutation p.P314L 0.71 deleterious(0.02) benign(0.118) TCGA-OR-A5JJ-01 4 69696697 69696698 - A UGT2B10 3'UTR 0.53 TCGA-OR-A5JJ-01 6 33288323 33288323 C G DAXX Missense_Mutation p.R362P 0.68 deleterious(0) possibly_damaging(0.587) TCGA-OR-A5JJ-01 7 100417840 100417840 G A EPHB4 Missense_Mutation p.T296I 0.45 tolerated(0.17) benign(0.004) TCGA-OR-A5JJ-01 7 138413506 138413506 C G ATP6V0A4 Missense_Mutation p.Q670H 0.44 tolerated(0.45) possibly_damaging(0.859) TCGA-OR-A5JJ-01 7 89982277 89982278 AG - GTPBP10 Frame_Shift_Del p.R61Vfs*17 0.26 TCGA-OR-A5JJ-01 9 8528683 8528683 C A PTPRD Missense_Mutation p.S150I 0.85 deleterious(0.04) probably_damaging(0.998) TCGA-OR-A5JK-01 10 15145497 15145497 G T RPP38 Missense_Mutation p.D62Y 0.34 deleterious(0.05) probably_damaging(0.943) TCGA-OR-A5JK-01 10 70672928 70672928 T A DDX50 Nonsense_Mutation p.L217* 0.06 TCGA-OR-A5JK-01 12 124904549 124904549 T C NCOR2 Missense_Mutation p.Y479C 0.47 unknown(0) TCGA-OR-A5JK-01 12 27950800 27950800 C T KLHL42 Missense_Mutation p.R407C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-OR-A5JK-01 12 57908595 57908595 T G MARS Missense_Mutation p.L687R 0.31 tolerated(0.81) benign(0.003) TCGA-OR-A5JK-01 13 53603040 53603040 G A OLFM4 Silent p.G23G 0.71 TCGA-OR-A5JK-01 17 19282211 19282211 A T MAPK7 Intron 0.62 TCGA-OR-A5JK-01 17 29533326 29533326 T C NF1 Silent p.F443F 0.56 TCGA-OR-A5JK-01 18 40854213 40854213 C T SYT4 Missense_Mutation p.D61N 0.22 tolerated(0.3) probably_damaging(0.939) TCGA-OR-A5JK-01 1 21013968 21013968 G A KIF17 Silent p.A617A 0.56 TCGA-OR-A5JK-01 1 247582065 247582065 C T NLRP3 5'UTR 0.08 TCGA-OR-A5JK-01 20 30414412 30414412 T C MYLK2 Missense_Mutation p.M326T 0.36 tolerated(0.53) benign(0.41) TCGA-OR-A5JK-01 20 44641917 44641917 C T MMP9 Missense_Mutation p.R452W 0.05 deleterious(0.02) benign(0.153) TCGA-OR-A5JK-01 22 17083013 17083013 C T TPTEP1 RNA 0.06 TCGA-OR-A5JK-01 2 197707448 197707448 G C PGAP1 Nonsense_Mutation p.S876* 0.65 TCGA-OR-A5JK-01 2 5841491 5841491 C G SOX11 3'UTR 0.62 TCGA-OR-A5JK-01 4 164394479 164394479 C T TKTL2 Missense_Mutation p.M136I 0.35 tolerated(0.19) probably_damaging(0.964) TCGA-OR-A5JK-01 4 183651430 183651430 A G TENM3 Missense_Mutation p.H888R 0.04 tolerated(0.22) possibly_damaging(0.507) TCGA-OR-A5JK-01 4 75482066 75482066 C T AREGB Missense_Mutation p.S41F 0.09 deleterious(0) probably_damaging(0.928) TCGA-OR-A5JK-01 5 112770658 112770658 C T TSSK1B 5'UTR 0.06 TCGA-OR-A5JK-01 5 65105961 65105961 C G NLN Missense_Mutation p.C604W 0.16 deleterious(0.02) possibly_damaging(0.673) TCGA-OR-A5JK-01 5 68684968 68684968 A T RAD17 Silent p.S345S 0.16 TCGA-OR-A5JK-01 5 79029380 79029380 G A CMYA5 Missense_Mutation p.V1598I 0.25 benign(0.025) TCGA-OR-A5JK-01 5 912038 912038 A G TRIP13 Missense_Mutation p.K316R 0.33 tolerated(0.11) benign(0.059) TCGA-OR-A5JK-01 6 8417697 8417697 A G SLC35B3 Missense_Mutation p.Y271H 0.52 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JK-01 7 107677982 107677982 G C LAMB4 Missense_Mutation p.H1510Q 0.08 tolerated(0.3) benign(0.002) TCGA-OR-A5JK-01 8 109796433 109796433 C G TMEM74 Missense_Mutation p.D299H 0.04 deleterious(0) probably_damaging(0.974) TCGA-OR-A5JK-01 8 22475230 22475230 C T CCAR2 Missense_Mutation p.S671L 0.36 tolerated(0.29) benign(0.033) TCGA-OR-A5JK-01 8 80553660 80553660 G C STMN2 Missense_Mutation p.E55Q 0.11 deleterious(0.04) possibly_damaging(0.894) TCGA-OR-A5JK-01 9 114128569 114128569 G T KIAA0368 Missense_Mutation p.A1931D 0.56 tolerated(0.21) benign(0.222) TCGA-OR-A5JK-01 9 16418993 16418993 T A BNC2 Silent p.V1098V 0.60 TCGA-OR-A5JK-01 X 129059084 129059084 G A UTP14A Silent p.K554K 0.06 TCGA-OR-A5JK-01 X 149931208 149931208 G A MTMR1 3'UTR 0.06 TCGA-OR-A5JK-01 X 5821488 5821488 C A NLGN4X Nonsense_Mutation p.E411* 0.55 TCGA-OR-A5JK-01 X 68725226 68725226 G C FAM155B Missense_Mutation p.C34S 0.79 deleterious(0.03) possibly_damaging(0.765) TCGA-OR-A5JL-01 13 113055396 113055396 T A SPACA7 Missense_Mutation p.N121K 0.35 tolerated(0.33) benign(0.094) TCGA-OR-A5JL-01 14 24546115 24546115 G A CPNE6 Missense_Mutation p.R398H 0.08 tolerated(0.27) probably_damaging(0.954) TCGA-OR-A5JL-01 16 67335694 67335694 C A KCTD19 Missense_Mutation p.G259C 0.38 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JL-01 17 4685848 4685848 C G TM4SF5 Nonsense_Mutation p.Y103* 0.10 TCGA-OR-A5JL-01 17 66511671 66511695 AGAGACCCATGGCATTCCTCAGGGA - PRKAR1A Frame_Shift_Del p.E44Dfs*77 0.51 TCGA-OR-A5JL-01 17 7574023 7574023 C - TP53 Frame_Shift_Del p.R335Lfs*10 0.42 TCGA-OR-A5JL-01 2 125521361 125521361 C G CNTNAP5 Missense_Mutation p.R782G 0.12 tolerated(0.09) possibly_damaging(0.895) TCGA-OR-A5JL-01 4 155720332 155720332 C T RBM46 Missense_Mutation p.H340Y 0.05 tolerated(0.79) benign(0.033) TCGA-OR-A5JL-01 4 162380371 162380371 G A FSTL5 Missense_Mutation p.T570I 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-OR-A5JL-01 6 161557497 161557497 C A AGPAT4 3'UTR 0.40 TCGA-OR-A5JL-01 6 170013695 170013695 T C WDR27 Missense_Mutation p.I761V 0.35 tolerated(1) benign(0.009) TCGA-OR-A5JL-01 6 27114542 27114542 C T HIST1H2BK Silent p.K12K 0.09 TCGA-OR-A5JL-01 8 142367099 142367099 G A GPR20 Nonsense_Mutation p.R309* 0.05 TCGA-OR-A5JL-01 9 79121624 79121624 A G GCNT1 3'UTR 0.61 TCGA-OR-A5JM-01 10 114193036 114193036 C T ZDHHC6 Missense_Mutation p.E303K 0.33 deleterious(0) benign(0.15) TCGA-OR-A5JM-01 10 118639436 118639436 A C ENO4 Silent p.R237R 0.27 TCGA-OR-A5JM-01 10 73571772 73571772 G A CDH23 Missense_Mutation p.G887E 0.21 deleterious(0) benign(0.065) TCGA-OR-A5JM-01 11 47712028 47712028 C G AGBL2 Missense_Mutation p.A411P 0.12 deleterious(0.05) benign(0.128) TCGA-OR-A5JM-01 11 56310464 56310464 G T OR5M11 Silent p.T90T 0.28 TCGA-OR-A5JM-01 11 57948089 57948089 G T OR9Q1 3'UTR 0.36 TCGA-OR-A5JM-01 11 76508604 76508604 C G TSKU 3'UTR 0.33 TCGA-OR-A5JM-01 11 93462779 93462779 G A KIAA1731 Splice_Site p.X2467_splice 0.25 TCGA-OR-A5JM-01 12 12815088 12815088 T C GPR19 Missense_Mutation p.T99A 0.04 deleterious(0.01) probably_damaging(0.966) TCGA-OR-A5JM-01 12 18641552 18641552 C T PIK3C2G Missense_Mutation p.H851Y 0.15 tolerated(0.35) benign(0.071) TCGA-OR-A5JM-01 12 25147185 25147185 A G C12orf77 3'UTR 0.19 TCGA-OR-A5JM-01 12 53565273 53565273 G T CSAD Intron 0.19 TCGA-OR-A5JM-01 12 64813853 64813853 G A XPOT Missense_Mutation p.A165T 0.09 tolerated(0.7) benign(0.003) TCGA-OR-A5JM-01 12 8242868 8242868 T G NECAP1 Missense_Mutation p.F92V 0.29 deleterious(0) probably_damaging(1) TCGA-OR-A5JM-01 14 20925557 20925557 G C APEX1 Missense_Mutation p.D283H 0.45 deleterious(0) probably_damaging(0.953) TCGA-OR-A5JM-01 14 81743692 81743692 C G STON2 Missense_Mutation p.V655L 0.43 tolerated(0.35) benign(0.087) TCGA-OR-A5JM-01 16 2523112 2523112 G A NTN3 Missense_Mutation p.R415H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5JM-01 16 67859153 67859153 C G TSNAXIP1 Missense_Mutation p.D210E 0.33 tolerated(0.35) possibly_damaging(0.898) TCGA-OR-A5JM-01 16 71482631 71482631 A T ZNF23 Missense_Mutation p.S433T 0.19 deleterious(0.05) benign(0.175) TCGA-OR-A5JM-01 17 27614591 27614591 C G NUFIP2 Missense_Mutation p.A141P 0.38 tolerated(0.12) possibly_damaging(0.474) TCGA-OR-A5JM-01 17 39505635 39505635 C A KRT33A Missense_Mutation p.D132Y 0.29 deleterious(0.02) possibly_damaging(0.902) TCGA-OR-A5JM-01 17 42288160 42288162 CTT - UBTF In_Frame_Del p.K453del 0.41 TCGA-OR-A5JM-01 17 78172210 78172210 G A CARD14 Missense_Mutation p.M557I 0.34 tolerated(0.26) benign(0.001) TCGA-OR-A5JM-01 18 22023012 22023012 G A IMPACT Splice_Site p.X164_splice 0.19 TCGA-OR-A5JM-01 18 28605791 28605791 C G DSC3 Missense_Mutation p.E189Q 0.05 deleterious(0.01) probably_damaging(0.938) TCGA-OR-A5JM-01 19 11598309 11598309 C T ZNF653 Silent p.A323A 0.20 TCGA-OR-A5JM-01 19 17838767 17838767 C T MAP1S Silent p.N858N 0.28 TCGA-OR-A5JM-01 19 20728340 20728340 A G ZNF737 Silent p.H223H 0.37 TCGA-OR-A5JM-01 19 46997582 46997582 T C PNMAL2 Missense_Mutation p.K381E 0.23 tolerated(0.2) benign(0.058) TCGA-OR-A5JM-01 19 47260313 47260315 AAG - FKRP 3'UTR 0.24 TCGA-OR-A5JM-01 19 4950704 4950704 C A UHRF1 RNA 0.19 TCGA-OR-A5JM-01 19 49994439 49994439 G A RPL13A Intron 0.29 TCGA-OR-A5JM-01 19 49994440 49994440 A T RPL13A Intron 0.30 TCGA-OR-A5JM-01 19 50666247 50666247 C A IZUMO2 Missense_Mutation p.A69S 0.25 deleterious(0.03) possibly_damaging(0.709) TCGA-OR-A5JM-01 19 55054818 55054818 T C KIR3DX1 3'UTR 0.22 TCGA-OR-A5JM-01 19 5832103 5832103 C T FUT6 Missense_Mutation p.R159H 0.43 deleterious(0.05) possibly_damaging(0.828) TCGA-OR-A5JM-01 1 115168233 115168233 C G DENND2C Missense_Mutation p.E125Q 0.45 tolerated(0.09) benign(0.015) TCGA-OR-A5JM-01 1 149899768 149899768 C A SF3B4 5'UTR 0.33 TCGA-OR-A5JM-01 1 152188235 152188235 C T HRNR Missense_Mutation p.G1957D 0.02 unknown(0) TCGA-OR-A5JM-01 1 156703977 156703979 CTC - RRNAD1 In_Frame_Del p.S272del 0.32 TCGA-OR-A5JM-01 1 156878718 156878718 G A PEAR1 Missense_Mutation p.C434Y 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-OR-A5JM-01 1 181767904 181767904 G A CACNA1E Silent p.G2292G 0.43 TCGA-OR-A5JM-01 1 206730911 206730911 G T RASSF5 Intron 0.32 TCGA-OR-A5JM-01 1 226566961 226566961 C T PARP1 Missense_Mutation p.A543T 0.22 tolerated(0.12) benign(0.133) TCGA-OR-A5JM-01 1 233121801 233121801 C G PCNXL2 Intron 0.07 TCGA-OR-A5JM-01 22 36598086 36598086 G T APOL4 5'UTR 0.33 TCGA-OR-A5JM-01 22 38051288 38051288 C T SH3BP1 Missense_Mutation p.P568L 0.38 tolerated(0.07) possibly_damaging(0.557) TCGA-OR-A5JM-01 22 38122417 38122417 G C TRIOBP Missense_Mutation p.R1285T 0.28 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-OR-A5JM-01 22 50946029 50946029 G A LMF2 Missense_Mutation p.L26F 0.04 tolerated(0.15) benign(0.405) TCGA-OR-A5JM-01 22 51144507 51144508 - C SHANK3 Frame_Shift_Ins p.K698Qfs*18 0.30 TCGA-OR-A5JM-01 2 113146643 113146643 G T RGPD8 Missense_Mutation p.F1293L 0.25 deleterious(0.03) benign(0.109) TCGA-OR-A5JM-01 2 166032830 166032830 G T SCN3A Silent p.I25I 0.35 TCGA-OR-A5JM-01 2 179586707 179586707 A G TTN Silent p.Y7561Y 0.33 TCGA-OR-A5JM-01 2 187626567 187626567 A G FAM171B Missense_Mutation p.N500D 0.29 tolerated(0.64) benign(0.122) TCGA-OR-A5JM-01 2 189963460 189963460 C T COL5A2 Missense_Mutation p.G132E 0.28 probably_damaging(0.999) TCGA-OR-A5JM-01 2 216176807 216176807 T G ATIC 5'UTR 0.55 TCGA-OR-A5JM-01 2 74710496 74710496 A C TTC31 Missense_Mutation p.K30Q 0.05 tolerated_low_confidence(0.1) benign(0.02) TCGA-OR-A5JM-01 2 96965141 96965141 C - SNRNP200 Frame_Shift_Del p.E219Rfs*27 0.16 TCGA-OR-A5JM-01 3 123633689 123633689 C T CCDC14 Silent p.A892A 0.28 TCGA-OR-A5JM-01 3 41266134 41266136 CTT - CTNNB1 In_Frame_Del p.S45del 0.34 TCGA-OR-A5JM-01 3 49136628 49136628 C G QARS Missense_Mutation p.R558P 0.33 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JM-01 3 49155468 49155468 C T USP19 Silent p.G70G 0.41 TCGA-OR-A5JM-01 3 98110047 98110047 G A OR5K3 Missense_Mutation p.D180N 0.18 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JM-01 4 138442524 138442524 A G PCDH18 Missense_Mutation p.Y1023H 0.49 tolerated(0.16) benign(0.406) TCGA-OR-A5JM-01 4 22390318 22390319 AA - GPR125 Frame_Shift_Del p.F992Sfs*36 0.21 TCGA-OR-A5JM-01 5 132406071 132406072 AT - HSPA4 Frame_Shift_Del p.M106Gfs*9 0.21 TCGA-OR-A5JM-01 5 140182806 140182806 C A PCDHA3 Missense_Mutation p.A675E 0.33 tolerated_low_confidence(0.06) benign(0.041) TCGA-OR-A5JM-01 5 57755592 57755592 C G PLK2 Silent p.S65S 0.31 TCGA-OR-A5JM-01 6 121482091 121482091 C A TBC1D32 Intron 0.33 TCGA-OR-A5JM-01 6 130762220 130762220 G C TMEM200A Missense_Mutation p.S218T 0.38 tolerated(0.43) benign(0.001) TCGA-OR-A5JM-01 6 132860125 132860125 A T TAAR9 Missense_Mutation p.S233C 0.31 tolerated(0.08) possibly_damaging(0.599) TCGA-OR-A5JM-01 6 158569912 158569912 G A SERAC1 Missense_Mutation p.R114W 0.23 tolerated(0.16) possibly_damaging(0.614) TCGA-OR-A5JM-01 6 167787940 167787940 C A TCP10 Splice_Site p.X230_splice 0.05 TCGA-OR-A5JM-01 6 18459916 18459916 C A RNF144B Silent p.G205G 0.23 TCGA-OR-A5JM-01 6 31922199 31922199 G A NELFE Missense_Mutation p.R255W 0.20 deleterious(0) unknown(0) TCGA-OR-A5JM-01 6 4116248 4116248 T C ECI2 Missense_Mutation p.K349E 0.28 deleterious(0) probably_damaging(0.994) TCGA-OR-A5JM-01 6 73935030 73935032 CTC - KHDC1L In_Frame_Del p.E34del 0.26 TCGA-OR-A5JM-01 6 84896081 84896083 GAA - KIAA1009 In_Frame_Del p.S458del 0.17 TCGA-OR-A5JM-01 7 100416169 100416169 C T EPHB4 Silent p.L465L 0.39 TCGA-OR-A5JM-01 7 29923752 29923752 G C WIPF3 Silent p.V214V 0.25 TCGA-OR-A5JM-01 7 43916339 43916340 TC - URGCP Frame_Shift_Del p.E908Kfs*18 0.24 TCGA-OR-A5JM-01 7 6487549 6487549 C T DAGLB 5'UTR 0.26 TCGA-OR-A5JM-01 7 72361532 72361534 CTT - POM121 5'UTR 0.18 TCGA-OR-A5JM-01 7 900013 900014 AG - SUN1 Frame_Shift_Del p.E592Gfs*18 0.31 TCGA-OR-A5JM-01 7 91793979 91793979 G A LRRD1 Nonsense_Mutation p.Q180* 0.41 TCGA-OR-A5JM-01 8 101540156 101540156 T C ANKRD46 Silent p.E129E 0.21 TCGA-OR-A5JM-01 8 109796810 109796810 G A TMEM74 Missense_Mutation p.S173F 0.15 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JM-01 8 12943918 12943919 CA - DLC1 Frame_Shift_Del p.V1449Gfs*13 0.09 TCGA-OR-A5JM-01 9 21974723 21974738 CCCGCCTCCAGCAGCG - CDKN2A Frame_Shift_Del p.A30Gfs*18 0.38 TCGA-OR-A5JM-01 9 88938270 88938270 C T ZCCHC6 Missense_Mutation p.E799K 0.21 deleterious(0.04) benign(0.008) TCGA-OR-A5JM-01 9 95237204 95237204 C G ASPN 5'UTR 0.31 TCGA-OR-A5JM-01 X 106358708 106358708 G A RBM41 Missense_Mutation p.R133C 0.45 deleterious(0) possibly_damaging(0.79) TCGA-OR-A5JM-01 X 110395637 110395637 G A PAK3 Splice_Site p.X180_splice 0.31 TCGA-OR-A5JM-01 X 119005865 119005865 C A NDUFA1 5'UTR 0.31 TCGA-OR-A5JM-01 X 119005866 119005866 G A NDUFA1 5'UTR 0.30 TCGA-OR-A5JM-01 X 19428068 19428068 A G MAP3K15 Silent p.F574F 0.29 TCGA-OR-A5JM-01 X 56591776 56591776 C G UBQLN2 Silent p.G490G 0.31 TCGA-OR-A5JM-01 X 66764955 66764955 G A AR 5'UTR 0.26 TCGA-OR-A5JO-01 12 124345570 124345570 C T DNAH10 Missense_Mutation p.T2136M 0.05 benign(0.028) TCGA-OR-A5JO-01 14 61746806 61746806 G A TMEM30B 3'UTR 0.35 TCGA-OR-A5JO-01 16 71712853 71712853 G T PHLPP2 Missense_Mutation p.T358N 0.15 tolerated(0.54) benign(0.004) TCGA-OR-A5JO-01 1 169526030 169526030 A G F5 Missense_Mutation p.I269T 0.16 deleterious(0) possibly_damaging(0.853) TCGA-OR-A5JO-01 20 3128060 3128060 T C FASTKD5 Missense_Mutation p.M553V 0.05 tolerated(0.4) benign(0.194) TCGA-OR-A5JO-01 20 58515269 58515269 T C PPP1R3D 5'UTR 0.13 TCGA-OR-A5JO-01 2 204737430 204737430 G T CTLA4 Splice_Site p.X190_splice 0.11 TCGA-OR-A5JO-01 2 223782837 223782837 C T ACSL3 Silent p.I210I 0.16 TCGA-OR-A5JO-01 4 160252876 160252876 C G RAPGEF2 Missense_Mutation p.P396R 0.32 tolerated(0.06) probably_damaging(0.947) TCGA-OR-A5JO-01 4 186456520 186456520 G T PDLIM3 Missense_Mutation p.F23L 0.05 deleterious(0.05) benign(0.118) TCGA-OR-A5JO-01 5 140222697 140222697 G T PCDHA8 Silent p.V597V 0.15 TCGA-OR-A5JO-01 5 180275766 180275766 C T ZFP62 3'UTR 0.10 TCGA-OR-A5JO-01 5 64468661 64468661 G A ADAMTS6 Nonsense_Mutation p.Q1029* 0.08 TCGA-OR-A5JO-01 6 146678777 146678777 A G GRM1 Missense_Mutation p.S517G 0.11 tolerated(0.07) benign(0.022) TCGA-OR-A5JO-01 6 44222996 44222996 C T SLC35B2 Missense_Mutation p.G249E 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5JO-01 8 57221513 57221513 C G SDR16C5 Missense_Mutation p.G180A 0.06 tolerated(0.06) probably_damaging(1) TCGA-OR-A5JO-01 9 95179219 95179219 A G OMD Missense_Mutation p.F208L 0.08 tolerated(0.54) benign(0.004) TCGA-OR-A5JO-01 X 91090913 91090913 C T PCDH11X Missense_Mutation p.P137L 0.41 deleterious(0) probably_damaging(1) TCGA-OR-A5JP-01 10 103901266 103901266 C G PPRC1 Missense_Mutation p.P1001A 0.10 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-OR-A5JP-01 10 60273078 60273078 G T BICC1 Nonsense_Mutation p.E59* 0.05 TCGA-OR-A5JP-01 10 94397209 94397209 A G KIF11 Silent p.L689L 0.08 TCGA-OR-A5JP-01 10 96802824 96802824 C T CYP2C8 Silent p.Q324Q 0.20 TCGA-OR-A5JP-01 10 98408466 98408466 C A PIK3AP1 Missense_Mutation p.A379S 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5JP-01 11 113857492 113857492 C A HTR3A Missense_Mutation p.P326T 0.08 tolerated_low_confidence(0.61) benign(0.003) TCGA-OR-A5JP-01 11 21250963 21250963 C A NELL1 Nonsense_Mutation p.C504* 0.13 TCGA-OR-A5JP-01 11 639873 639873 G A DRD4 Missense_Mutation p.M208I 0.33 deleterious(0.01) unknown(0) TCGA-OR-A5JP-01 11 64518843 64518843 G A PYGM Silent p.L641L 0.25 TCGA-OR-A5JP-01 12 102043128 102043128 A G MYBPC1 Silent p.G404G 0.17 TCGA-OR-A5JP-01 12 112690234 112690234 G T HECTD4 Silent p.R1036R 0.10 TCGA-OR-A5JP-01 12 11421070 11421070 C A PRB3 Missense_Mutation p.G38V 0.18 deleterious(0.02) unknown(0) TCGA-OR-A5JP-01 12 13526239 13526239 T A C12orf36 Missense_Mutation p.R106W 0.14 possibly_damaging(0.827) TCGA-OR-A5JP-01 12 19499950 19499950 G T PLEKHA5 Missense_Mutation p.R911L 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5JP-01 12 29604304 29604304 T C OVCH1 Missense_Mutation p.E910G 0.29 tolerated(0.22) benign(0.018) TCGA-OR-A5JP-01 12 5155178 5155178 G T KCNA5 3'UTR 0.11 TCGA-OR-A5JP-01 12 52188154 52188154 G T SCN8A Splice_Site p.X1509_splice 0.18 TCGA-OR-A5JP-01 12 93793201 93793201 G C NUDT4 3'UTR 0.16 TCGA-OR-A5JP-01 13 39452353 39452353 T C FREM2 Silent p.F2918F 0.14 TCGA-OR-A5JP-01 14 105415287 105415287 G C AHNAK2 Silent p.A2167A 0.41 TCGA-OR-A5JP-01 14 55903342 55903342 G T TBPL2 Missense_Mutation p.S182Y 0.11 tolerated(0.05) benign(0.257) TCGA-OR-A5JP-01 14 73959296 73959296 G T HEATR4 Intron 0.23 TCGA-OR-A5JP-01 14 76447102 76447102 T G TGFB3 Silent p.G45G 0.18 TCGA-OR-A5JP-01 14 81046735 81046735 C T CEP128 Missense_Mutation p.E947K 0.19 tolerated(0.07) probably_damaging(0.995) TCGA-OR-A5JP-01 15 23810912 23810912 C T MKRN3 5'UTR 0.08 TCGA-OR-A5JP-01 15 65426147 65426147 G C PDCD7 5'UTR 0.31 TCGA-OR-A5JP-01 15 78882715 78882715 A G CHRNA5 Missense_Mutation p.I328V 0.26 tolerated(0.05) probably_damaging(0.977) TCGA-OR-A5JP-01 16 68293632 68293632 G T PLA2G15 3'UTR 0.19 TCGA-OR-A5JP-01 16 84256305 84256305 G A KCNG4 Silent p.L360L 0.26 TCGA-OR-A5JP-01 16 84806251 84806251 C G USP10 Missense_Mutation p.I701M 0.09 tolerated(0.13) possibly_damaging(0.653) TCGA-OR-A5JP-01 17 29664421 29664421 G T NF1 Nonsense_Mutation p.E2155* 0.70 TCGA-OR-A5JP-01 17 42477935 42477940 CTGAAA - GPATCH8 In_Frame_Del p.V502_S503del 0.20 TCGA-OR-A5JP-01 17 4577946 4577947 - C PELP1 Frame_Shift_Ins p.S481Efs*3 0.15 TCGA-OR-A5JP-01 17 48165662 48165662 A C ITGA3 Intron 0.09 TCGA-OR-A5JP-01 17 72786401 72786401 C T TMEM104 Silent p.Y104Y 0.22 TCGA-OR-A5JP-01 17 72862659 72862659 T C FDXR Missense_Mutation p.H144R 0.20 tolerated(1) benign(0) TCGA-OR-A5JP-01 17 7574011 7574012 - CGAAG TP53 Frame_Shift_Ins p.E339Afs*8 0.18 TCGA-OR-A5JP-01 17 76067213 76067213 G C TNRC6C Silent p.R939R 0.08 TCGA-OR-A5JP-01 18 12986994 12986994 C A SEH1L Missense_Mutation p.H402N 0.39 tolerated_low_confidence(0.28) benign(0.056) TCGA-OR-A5JP-01 18 46447841 46447841 G A SMAD7 Silent p.T394T 0.33 TCGA-OR-A5JP-01 19 12460499 12460499 G C ZNF442 3'UTR 0.10 TCGA-OR-A5JP-01 19 14000524 14000524 C T C19orf57 Missense_Mutation p.R382K 0.19 tolerated(1) possibly_damaging(0.567) TCGA-OR-A5JP-01 19 14591159 14591159 G A GIPC1 Missense_Mutation p.R205C 0.13 deleterious(0.01) probably_damaging(0.91) TCGA-OR-A5JP-01 19 15739164 15739164 C T CYP4F8 RNA 0.21 TCGA-OR-A5JP-01 19 23837296 23837296 C G ZNF675 Missense_Mutation p.D147H 0.04 tolerated(0.11) possibly_damaging(0.79) TCGA-OR-A5JP-01 19 36380791 36380791 C - NFKBID Splice_Site p.X296_splice 0.34 TCGA-OR-A5JP-01 19 53762590 53762590 T G VN1R2 Missense_Mutation p.V321G 0.13 deleterious(0.01) possibly_damaging(0.838) TCGA-OR-A5JP-01 1 103487285 103487285 C G COL11A1 Missense_Mutation p.G429A 0.35 probably_damaging(0.999) TCGA-OR-A5JP-01 1 145290799 145290799 C T NOTCH2NL 3'Flank 0.21 TCGA-OR-A5JP-01 1 150444740 150444740 G A RPRD2 Missense_Mutation p.V1106I 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-OR-A5JP-01 1 19518980 19518980 C A UBR4 Missense_Mutation p.G400C 0.08 probably_damaging(0.995) TCGA-OR-A5JP-01 1 205883922 205883930 CTGGGTGTG - SLC26A9 3'UTR 0.42 TCGA-OR-A5JP-01 1 21599251 21599252 - GT ECE1 Frame_Shift_Ins p.R145Hfs*28 0.23 TCGA-OR-A5JP-01 1 225528307 225528307 G C DNAH14 Missense_Mutation p.D2632H 0.11 tolerated(0.1) benign(0.391) TCGA-OR-A5JP-01 1 226496922 226496922 C G LIN9 5'UTR 0.30 TCGA-OR-A5JP-01 1 43779576 43779576 C A TIE1 Silent p.T782T 0.08 TCGA-OR-A5JP-01 1 60499262 60499262 C A C1orf87 Missense_Mutation p.L305F 0.15 deleterious(0) possibly_damaging(0.79) TCGA-OR-A5JP-01 1 70493957 70493957 G A LRRC7 Missense_Mutation p.R595H 0.20 tolerated(0.1) possibly_damaging(0.858) TCGA-OR-A5JP-01 20 31626724 31626724 C A BPIFB6 Missense_Mutation p.L286M 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5JP-01 20 56136550 56136550 G C PCK1 Missense_Mutation p.R28T 0.22 tolerated(0.11) possibly_damaging(0.516) TCGA-OR-A5JP-01 20 59829909 59829909 G A CDH4 Missense_Mutation p.E29K 0.21 tolerated(0.32) benign(0.01) TCGA-OR-A5JP-01 21 34166441 34166441 G C C21orf62 Missense_Mutation p.L98V 0.35 tolerated(0.43) possibly_damaging(0.525) TCGA-OR-A5JP-01 21 43412530 43412530 C G ZBTB21 Missense_Mutation p.A559P 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5JP-01 22 30057313 30057313 G A NF2 Silent p.S265S 0.14 TCGA-OR-A5JP-01 22 38374133 38374133 G A SOX10 Silent p.N146N 0.11 TCGA-OR-A5JP-01 2 116447467 116447467 C T DPP10 Silent p.Y186Y 0.22 TCGA-OR-A5JP-01 2 136590717 136590717 C G LCT Missense_Mutation p.E228D 0.15 tolerated(0.42) benign(0.003) TCGA-OR-A5JP-01 2 225717140 225717141 CA - DOCK10 Frame_Shift_Del p.C699Hfs*2 0.20 TCGA-OR-A5JP-01 2 27257050 27257050 G A TMEM214 Silent p.K89K 0.19 TCGA-OR-A5JP-01 2 70188127 70188127 C T ASPRV1 Missense_Mutation p.D232N 0.12 tolerated(0.16) possibly_damaging(0.683) TCGA-OR-A5JP-01 2 84848429 84848429 T A DNAH6 Missense_Mutation p.Y1303N 0.07 deleterious(0) probably_damaging(0.938) TCGA-OR-A5JP-01 3 122990434 122990434 C G SEC22A Missense_Mutation p.I263M 0.20 deleterious(0) possibly_damaging(0.513) TCGA-OR-A5JP-01 3 190347317 190347317 C A IL1RAP Intron 0.44 TCGA-OR-A5JP-01 3 46306920 46306920 A C CCR3 Missense_Mutation p.I112L 0.38 tolerated(0.06) possibly_damaging(0.721) TCGA-OR-A5JP-01 3 93733581 93733581 G C STX19 Missense_Mutation p.S178C 0.51 deleterious(0) possibly_damaging(0.503) TCGA-OR-A5JP-01 4 111409785 111409785 A G ENPEP Missense_Mutation p.I245V 0.22 tolerated(0.09) benign(0.437) TCGA-OR-A5JP-01 4 156830150 156830150 G C TDO2 Missense_Mutation p.D139H 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5JP-01 4 40810424 40810426 AGA - NSUN7 In_Frame_Del p.K547del 0.22 TCGA-OR-A5JP-01 4 77033649 77033649 A G ART3 Missense_Mutation p.I383V 0.08 tolerated_low_confidence(1) benign(0.001) TCGA-OR-A5JP-01 5 128301738 128301738 G A SLC27A6 5'UTR 0.29 TCGA-OR-A5JP-01 5 131607853 131607853 G A PDLIM4 Silent p.A308A 0.26 TCGA-OR-A5JP-01 5 131940646 131940647 TG - RAD50 Frame_Shift_Del p.V892Gfs*5 0.22 TCGA-OR-A5JP-01 5 145631438 145631438 G C RBM27 Missense_Mutation p.D482H 0.26 deleterious(0) benign(0.004) TCGA-OR-A5JP-01 6 134373567 134373567 T A SLC2A12 Missense_Mutation p.T18S 0.30 tolerated_low_confidence(0.36) benign(0.002) TCGA-OR-A5JP-01 6 30313066 30313066 C A RPP21 Intron 0.17 TCGA-OR-A5JP-01 6 32166275 32166275 G A NOTCH4 Missense_Mutation p.A1560V 0.36 tolerated(0.09) benign(0.002) TCGA-OR-A5JP-01 6 52960318 52960318 T G FBXO9 Missense_Mutation p.L364R 0.14 tolerated(0.4) benign(0.078) TCGA-OR-A5JP-01 6 54095603 54095603 C T MLIP Missense_Mutation p.T402I 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-OR-A5JP-01 6 6175004 6175004 A G F13A1 Missense_Mutation p.V519A 0.27 deleterious(0) possibly_damaging(0.476) TCGA-OR-A5JP-01 6 82921272 82921272 A C IBTK Missense_Mutation p.V770G 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JP-01 7 13971355 13971355 C T ETV1 Missense_Mutation p.E192K 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-OR-A5JP-01 7 38466556 38466556 G C AMPH Missense_Mutation p.Q405E 0.16 tolerated(0.33) benign(0.02) TCGA-OR-A5JP-01 7 44800087 44800087 A T ZMIZ2 Missense_Mutation p.T379S 0.14 deleterious(0.01) benign(0.314) TCGA-OR-A5JP-01 7 88964602 88964602 T C ZNF804B Missense_Mutation p.I769T 0.31 tolerated(1) benign(0.003) TCGA-OR-A5JP-01 8 144695922 144695922 G A TSTA3 Silent p.S243S 0.23 TCGA-OR-A5JP-01 9 35958062 35958062 C G OR2S2 Missense_Mutation p.G12R 0.12 deleterious(0.02) benign(0.009) TCGA-OR-A5JP-01 9 84529322 84529322 G A SPATA31D5P RNA 0.19 TCGA-OR-A5JP-01 9 88954993 88954994 AA - ZCCHC6 Frame_Shift_Del p.F389Pfs*3 0.23 TCGA-OR-A5JP-01 X 115567868 115567868 G T SLC6A14 5'UTR 0.71 TCGA-OR-A5JP-01 X 115567869 115567869 G T SLC6A14 5'UTR 0.70 TCGA-OR-A5JP-01 X 48433575 48433575 T A RBM3 Missense_Mutation p.S3T 0.42 deleterious(0.02) benign(0.222) TCGA-OR-A5JP-01 X 55758011 55758011 C G RRAGB Missense_Mutation p.R198G 0.30 deleterious(0) probably_damaging(0.987) TCGA-OR-A5JP-01 X 72674262 72674262 C G CDX4 Missense_Mutation p.I232M 0.05 tolerated(0.25) probably_damaging(0.986) TCGA-OR-A5JQ-01 1 43775126 43775126 C T TIE1 Missense_Mutation p.A419V 0.05 tolerated(0.24) benign(0.052) TCGA-OR-A5JQ-01 22 33960966 33960966 T C LARGE Missense_Mutation p.I219V 0.07 tolerated(0.84) benign(0.02) TCGA-OR-A5JQ-01 2 71650459 71650459 C G ZNF638 Missense_Mutation p.S1272W 0.05 deleterious(0) possibly_damaging(0.778) TCGA-OR-A5JQ-01 3 130361853 130361853 T A COL6A6 Missense_Mutation p.V1738E 0.36 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JQ-01 6 29079940 29079940 G A OR2J3 Silent p.P91P 0.08 TCGA-OR-A5JQ-01 7 117242878 117242878 A T CFTR Splice_Site p.X874_splice 0.06 TCGA-OR-A5JQ-01 7 143098587 143098587 G T EPHA1 Missense_Mutation p.R88S 0.13 deleterious(0.04) probably_damaging(1) TCGA-OR-A5JQ-01 8 144892937 144892937 C A SCRIB Silent p.P441P 0.40 TCGA-OR-A5JQ-01 9 107568702 107568702 G C ABCA1 Silent p.P1428P 0.31 TCGA-OR-A5JR-01 11 19185906 19185906 G T ZDHHC13 Missense_Mutation p.C431F 0.05 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JR-01 12 49075305 49075305 G A KANSL2 Silent p.H37H 0.48 TCGA-OR-A5JR-01 14 45542716 45542716 A G FAM179B Silent p.K1705K 0.39 TCGA-OR-A5JR-01 19 19656298 19656298 G A CILP2 Missense_Mutation p.E982K 0.31 tolerated(0.74) benign(0.007) TCGA-OR-A5JR-01 1 206784680 206784680 G C EIF2D Missense_Mutation p.T35S 0.73 tolerated(0.43) benign(0.003) TCGA-OR-A5JR-01 5 168006328 168006328 G C PANK3 5'UTR 0.39 TCGA-OR-A5JR-01 5 39341264 39341264 G A C9 Nonsense_Mutation p.R154* 0.03 TCGA-OR-A5JS-01 10 49207753 49207753 C A FAM25C Missense_Mutation p.R16L 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-OR-A5JS-01 11 129788483 129788483 G A PRDM10 Missense_Mutation p.T726M 0.05 tolerated(0.56) benign(0.021) TCGA-OR-A5JS-01 11 134240909 134240909 A G GLB1L2 Missense_Mutation p.K408R 0.45 tolerated(0.42) benign(0.001) TCGA-OR-A5JS-01 11 36596586 36596586 T C RAG1 Silent p.L578L 0.03 TCGA-OR-A5JS-01 12 117160973 117160973 G A C12orf49 Missense_Mutation p.P56L 0.18 tolerated(0.08) benign(0.011) TCGA-OR-A5JS-01 12 120616700 120616700 G A GCN1L1 Silent p.H160H 0.38 TCGA-OR-A5JS-01 12 89744754 89744754 T C DUSP6 Missense_Mutation p.N150S 0.50 tolerated(0.83) benign(0) TCGA-OR-A5JS-01 13 48934194 48934194 C T RB1 Nonsense_Mutation p.Q217* 0.75 TCGA-OR-A5JS-01 14 57268974 57268974 G C OTX2 Missense_Mutation p.P125A 0.42 deleterious(0.03) benign(0.347) TCGA-OR-A5JS-01 14 95571420 95571420 G - DICER1 Frame_Shift_Del p.P1086Lfs*9 0.31 TCGA-OR-A5JS-01 16 20335574 20335574 A G GP2 Silent p.Y33Y 0.39 TCGA-OR-A5JS-01 16 24580870 24580870 A C RBBP6 Missense_Mutation p.L953F 0.44 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5JS-01 16 71674801 71674801 G A MARVELD3 Silent p.V368V 0.43 TCGA-OR-A5JS-01 17 38561085 38561085 G A TOP2A Silent p.F668F 0.40 TCGA-OR-A5JS-01 17 45012394 45012394 G A GOSR2 Splice_Site p.X113_splice 0.45 TCGA-OR-A5JS-01 17 77043879 77043879 C T C1QTNF1 Silent p.F185F 0.81 TCGA-OR-A5JS-01 18 18629131 18629131 C T ROCK1 Missense_Mutation p.M112I 0.32 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JS-01 19 40993664 40993664 G A SPTBN4 Missense_Mutation p.R77H 0.08 deleterious(0.01) possibly_damaging(0.773) TCGA-OR-A5JS-01 19 49565034 49565034 G A NTF4 Missense_Mutation p.P74L 0.10 tolerated(0.3) benign(0.003) TCGA-OR-A5JS-01 19 8922403 8922403 T C ZNF558 Missense_Mutation p.K255E 0.43 tolerated(0.06) possibly_damaging(0.832) TCGA-OR-A5JS-01 1 116382955 116382955 G A NHLH2 5'UTR 0.61 TCGA-OR-A5JS-01 1 160922445 160922445 C A ITLN2 Missense_Mutation p.C53F 0.37 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JS-01 1 215781465 215781465 C A KCTD3 Silent p.S472S 0.43 TCGA-OR-A5JS-01 2 168100197 168100197 A T XIRP2 Silent p.G765G 0.04 TCGA-OR-A5JS-01 2 178097101 178097102 - A NFE2L2 Intron 0.19 TCGA-OR-A5JS-01 2 70933534 70933534 C T ADD2 Missense_Mutation p.E3K 0.45 tolerated(0.46) benign(0.012) TCGA-OR-A5JS-01 2 99860495 99860495 A G LYG2 Missense_Mutation p.F163L 0.54 deleterious(0.02) benign(0.252) TCGA-OR-A5JS-01 3 123010075 123010075 G A ADCY5 Missense_Mutation p.A1071V 0.59 deleterious(0.04) possibly_damaging(0.846) TCGA-OR-A5JS-01 3 30029712 30029712 G A RBMS3 Missense_Mutation p.E393K 0.16 deleterious(0.01) benign(0.012) TCGA-OR-A5JS-01 3 41266103 41266103 G C CTNNB1 Missense_Mutation p.G34R 0.23 deleterious(0) probably_damaging(0.997) TCGA-OR-A5JS-01 4 1107223 1107223 G A RNF212 Silent p.C10C 0.31 TCGA-OR-A5JS-01 4 126367514 126367514 C T FAT4 Silent p.S2420S 0.23 TCGA-OR-A5JS-01 4 15444216 15444216 C T C1QTNF7 Silent p.F228F 0.54 TCGA-OR-A5JS-01 4 154624343 154624343 C G TLR2 Missense_Mutation p.S95C 0.34 deleterious(0) probably_damaging(0.992) TCGA-OR-A5JS-01 4 80328985 80328985 C T GK2 Missense_Mutation p.E124K 0.27 tolerated(0.16) possibly_damaging(0.555) TCGA-OR-A5JS-01 4 96163681 96163681 C T UNC5C Missense_Mutation p.R336H 0.62 deleterious(0.01) probably_damaging(1) TCGA-OR-A5JS-01 5 16701501 16701501 G A MYO10 Silent p.D1001D 0.41 TCGA-OR-A5JS-01 5 36671233 36671233 T C SLC1A3 Missense_Mutation p.I141T 0.38 deleterious(0) benign(0.297) TCGA-OR-A5JS-01 5 53815125 53815125 C T SNX18 Missense_Mutation p.T448M 0.15 deleterious(0) probably_damaging(0.996) TCGA-OR-A5JS-01 5 54830511 54830511 G A PPAP2A 5'UTR 0.40 TCGA-OR-A5JS-01 5 75594617 75594617 A G SV2C Splice_Site p.X501_splice 0.38 TCGA-OR-A5JS-01 6 108194052 108194052 G T SEC63 Nonsense_Mutation p.S700* 0.51 TCGA-OR-A5JS-01 6 137193359 137193359 G A PEX7 Silent p.V257V 0.21 TCGA-OR-A5JS-01 6 26546196 26546196 G A HMGN4 3'UTR 0.42 TCGA-OR-A5JS-01 6 27368446 27368446 C T ZNF391 Silent p.H99H 0.55 TCGA-OR-A5JS-01 6 31785661 31785661 C A HSPA1A 3'UTR 0.33 TCGA-OR-A5JS-01 6 55923960 55923960 C A COL21A1 Intron 0.52 TCGA-OR-A5JS-01 7 122526225 122526225 G - CADPS2 Frame_Shift_Del p.S56Lfs*2 0.37 TCGA-OR-A5JS-01 8 72981348 72981348 G T TRPA1 Silent p.L118L 0.43 TCGA-OR-A5JS-01 9 15478495 15478495 G A PSIP1 Silent p.P203P 0.06 TCGA-OR-A5JS-01 9 80336130 80336130 C T GNAQ 3'UTR 0.30 TCGA-OR-A5JS-01 9 8376721 8376721 C A PTPRD Missense_Mutation p.K1464N 0.35 deleterious(0) probably_damaging(1) TCGA-OR-A5JT-01 10 119003690 119003690 G A SLC18A2 Silent p.A110A 0.33 TCGA-OR-A5JT-01 11 55579239 55579239 G A OR5L1 Silent p.V99V 0.60 TCGA-OR-A5JT-01 11 68506084 68506084 T C MTL5 Intron 0.45 TCGA-OR-A5JT-01 11 72412758 72412758 G A ARAP1 Silent p.H746H 0.40 TCGA-OR-A5JT-01 12 109182933 109182933 G A SSH1 Missense_Mutation p.P661S 0.49 tolerated_low_confidence(0.11) benign(0.056) TCGA-OR-A5JT-01 12 109616998 109616999 TC - ACACB Frame_Shift_Del p.L516Vfs*16 0.17 TCGA-OR-A5JT-01 12 122657198 122657198 G A IL31 Missense_Mutation p.P86S 0.04 tolerated(1) benign(0.001) TCGA-OR-A5JT-01 12 5020979 5020979 C A KCNA1 Silent p.P145P 0.38 TCGA-OR-A5JT-01 12 65146525 65146525 T C GNS Missense_Mutation p.K69E 0.21 tolerated(0.06) benign(0.329) TCGA-OR-A5JT-01 12 68051422 68051422 C T DYRK2 Silent p.H245H 0.24 TCGA-OR-A5JT-01 12 94702575 94702575 G A CCDC41 3'UTR 0.45 TCGA-OR-A5JT-01 13 29242664 29242664 C G POMP Missense_Mutation p.L73V 0.52 deleterious(0) benign(0.169) TCGA-OR-A5JT-01 16 1254107 1254107 C A CACNA1H Nonsense_Mutation p.C700* 0.48 TCGA-OR-A5JT-01 16 4431679 4431679 G A VASN Silent p.Q267Q 0.24 TCGA-OR-A5JT-01 16 56553793 56553793 G T BBS2 5'UTR 0.52 TCGA-OR-A5JT-01 16 77918647 77918647 A T VAT1L Missense_Mutation p.Y342F 0.09 tolerated(0.12) benign(0.015) TCGA-OR-A5JT-01 17 26723260 26723260 C A SARM1 Silent p.G676G 0.43 TCGA-OR-A5JT-01 17 68175202 68175202 G T KCNJ2 3'UTR 0.36 TCGA-OR-A5JT-01 18 2892375 2892375 G A EMILIN2 Silent p.S750S 0.62 TCGA-OR-A5JT-01 1 115261240 115261241 - T CSDE1 Frame_Shift_Ins p.N827Kfs*18 0.33 TCGA-OR-A5JT-01 2 160245862 160245862 G T BAZ2B Missense_Mutation p.D1070E 0.07 probably_damaging(0.955) TCGA-OR-A5JT-01 3 14207051 14207051 T C XPC Missense_Mutation p.Y219C 0.24 deleterious(0) probably_damaging(0.957) TCGA-OR-A5JT-01 4 118005441 118005441 T A TRAM1L1 Nonstop_Mutation p.*370Lext*6 0.37 TCGA-OR-A5JT-01 4 75065574 75065574 A G MTHFD2L Missense_Mutation p.H172R 0.37 deleterious(0) probably_damaging(0.989) TCGA-OR-A5JT-01 4 85594085 85594085 C T WDFY3 Missense_Mutation p.C3506Y 0.52 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JT-01 5 1334422 1334422 G C CLPTM1L Missense_Mutation p.F291L 0.23 tolerated(0.22) benign(0.208) TCGA-OR-A5JT-01 5 139197105 139197105 T C PSD2 Silent p.S352S 0.21 TCGA-OR-A5JT-01 5 140503194 140503194 G A PCDHB4 Silent p.P538P 0.10 TCGA-OR-A5JT-01 5 149589012 149589012 C T SLC6A7 Missense_Mutation p.S582L 0.45 tolerated(0.6) benign(0.036) TCGA-OR-A5JT-01 5 172745041 172745041 C T STC2 Missense_Mutation p.G240R 0.20 tolerated(0.67) benign(0.002) TCGA-OR-A5JT-01 5 177580887 177580887 C T NHP2 5'UTR 0.20 TCGA-OR-A5JT-01 5 179290951 179290951 C T TBC1D9B Missense_Mutation p.D1084N 0.24 tolerated(0.26) benign(0.04) TCGA-OR-A5JT-01 6 135239705 135239705 G T ALDH8A1 Missense_Mutation p.L438M 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-OR-A5JT-01 6 153077288 153077288 C T VIP Missense_Mutation p.P119S 0.30 tolerated(0.52) benign(0.007) TCGA-OR-A5JT-01 6 52999074 52999074 T G GCM1 Missense_Mutation p.K42Q 0.87 deleterious(0) probably_damaging(0.916) TCGA-OR-A5JT-01 7 142636757 142636757 C G C7orf34 Missense_Mutation p.F38L 0.49 tolerated_low_confidence(0.31) benign(0.023) TCGA-OR-A5JT-01 7 142962356 142962356 T C GSTK1 Silent p.N185N 0.27 TCGA-OR-A5JT-01 8 109796609 109796609 G A TMEM74 Missense_Mutation p.T240M 0.29 deleterious(0) possibly_damaging(0.863) TCGA-OR-A5JT-01 8 68084742 68084742 G T CSPP1 Missense_Mutation p.A969S 0.06 tolerated(0.2) benign(0.017) TCGA-OR-A5JT-01 9 32632961 32632961 G A TAF1L Missense_Mutation p.R873C 0.04 deleterious(0) probably_damaging(0.973) TCGA-OR-A5JT-01 X 102192303 102192303 G T RAB40AL Silent p.L19L 0.21 TCGA-OR-A5JU-01 10 103558728 103558728 T G MGEA5 Missense_Mutation p.L560F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5JU-01 10 108434909 108434909 C T SORCS1 Missense_Mutation p.S613N 0.08 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JU-01 10 116057115 116057115 C T AFAP1L2 Missense_Mutation p.R724Q 0.10 deleterious(0) possibly_damaging(0.509) TCGA-OR-A5JU-01 10 55582016 55582016 A T PCDH15 Missense_Mutation p.S1826T 0.05 tolerated_low_confidence(0.65) unknown(0) TCGA-OR-A5JU-01 11 43469578 43469578 G A TTC17 Missense_Mutation p.G898R 0.05 deleterious(0.01) probably_damaging(0.973) TCGA-OR-A5JU-01 11 67161249 67161249 G A RAD9A Missense_Mutation p.R146H 0.08 tolerated(0.07) benign(0.022) TCGA-OR-A5JU-01 14 69256542 69256542 G C ZFP36L1 Missense_Mutation p.T242S 0.15 tolerated(0.57) benign(0.02) TCGA-OR-A5JU-01 15 79092715 79092715 C T ADAMTS7 Missense_Mutation p.R92H 0.10 tolerated(0.33) benign(0.045) TCGA-OR-A5JU-01 17 39521201 39521201 G A KRT33B Silent p.S309S 0.03 TCGA-OR-A5JU-01 17 55182842 55182842 G A AKAP1 Missense_Mutation p.R6H 0.04 tolerated(0.06) probably_damaging(0.999) TCGA-OR-A5JU-01 19 1062277 1062277 C T ABCA7 Missense_Mutation p.R1893C 0.06 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JU-01 1 145594075 145594075 C T POLR3C Missense_Mutation p.R496H 0.04 deleterious(0.01) probably_damaging(0.939) TCGA-OR-A5JU-01 1 156902292 156902292 G T LRRC71 Missense_Mutation p.K506N 0.07 tolerated(0.16) benign(0.372) TCGA-OR-A5JU-01 1 196300332 196300332 T C KCNT2 Missense_Mutation p.H686R 0.09 deleterious(0) probably_damaging(0.989) TCGA-OR-A5JU-01 1 22191512 22191512 C A HSPG2 Missense_Mutation p.A1484S 0.08 probably_damaging(0.947) TCGA-OR-A5JU-01 1 37979141 37979141 T C MEAF6 Splice_Site p.X31_splice 0.17 TCGA-OR-A5JU-01 1 50886849 50886849 C T DMRTA2 Silent p.A120A 0.11 TCGA-OR-A5JU-01 20 43943206 43943206 G C RBPJL Splice_Site p.X340_splice 0.08 TCGA-OR-A5JU-01 22 19706333 19706333 C A SEPT5 Intron 0.20 TCGA-OR-A5JU-01 2 176856974 176856974 A C KIAA1715 Missense_Mutation p.F81C 0.24 deleterious(0) probably_damaging(0.971) TCGA-OR-A5JU-01 2 21233524 21233524 T A APOB Silent p.P2072P 0.08 TCGA-OR-A5JU-01 2 88485425 88485425 G T THNSL2 Missense_Mutation p.R413L 0.08 deleterious(0.04) benign(0.049) TCGA-OR-A5JU-01 3 113377864 113377864 A G KIAA2018 Missense_Mutation p.S889P 0.10 benign(0.002) TCGA-OR-A5JU-01 3 173322702 173322702 C A NLGN1 Nonsense_Mutation p.S105* 0.11 TCGA-OR-A5JU-01 5 179221324 179221324 A G LTC4S Intron 0.24 TCGA-OR-A5JU-01 6 161015130 161015130 G A LPA Silent p.P1163P 0.14 TCGA-OR-A5JU-01 7 11441492 11441492 C T THSD7A Silent p.P1447P 0.08 TCGA-OR-A5JU-01 7 138958801 138958801 A G UBN2 Missense_Mutation p.K652E 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-OR-A5JU-01 7 32529910 32529910 C A LSM5 Intron 0.09 TCGA-OR-A5JU-01 9 86504155 86504155 G A KIF27 Missense_Mutation p.P608L 0.09 tolerated(0.09) benign(0.051) TCGA-OR-A5JU-01 X 72674420 72674420 G T CDX4 Nonstop_Mutation p.*285Lext*46 0.11 TCGA-OR-A5JV-01 11 64428611 64428611 C A NRXN2 Missense_Mutation p.G600V 0.25 deleterious(0.02) benign(0.064) TCGA-OR-A5JV-01 12 21445134 21445134 G T SLCO1A2 Missense_Mutation p.S525Y 0.30 deleterious(0) probably_damaging(0.987) TCGA-OR-A5JV-01 12 54676958 54676958 G A HNRNPA1 Missense_Mutation p.G283R 0.34 tolerated(0.13) unknown(0) TCGA-OR-A5JV-01 16 1872357 1872357 G T HAGH Missense_Mutation p.D86E 0.27 tolerated(1) benign(0) TCGA-OR-A5JV-01 16 21042562 21042562 G C DNAH3 Silent p.P1748P 0.17 TCGA-OR-A5JV-01 16 67268118 67268118 G C FHOD1 Silent p.P496P 0.50 TCGA-OR-A5JV-01 17 41930365 41930365 C T CD300LG Silent p.T155T 0.16 TCGA-OR-A5JV-01 19 14288434 14288434 G A LPHN1 Missense_Mutation p.R65C 0.04 deleterious(0) probably_damaging(1) TCGA-OR-A5JV-01 19 21607539 21607539 C T ZNF493 Missense_Mutation p.T693I 0.10 deleterious(0) benign(0.125) TCGA-OR-A5JV-01 19 36275213 36275213 C A ARHGAP33 Missense_Mutation p.P521T 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.803) TCGA-OR-A5JV-01 19 629898 629898 G A POLRMT Missense_Mutation p.A155V 0.22 tolerated(0.29) benign(0) TCGA-OR-A5JV-01 19 9068139 9068139 C A MUC16 Missense_Mutation p.G6436V 0.26 unknown(0) TCGA-OR-A5JV-01 1 238048868 238048868 C T ZP4 Missense_Mutation p.G328D 0.15 tolerated(0.08) possibly_damaging(0.589) TCGA-OR-A5JV-01 20 16253901 16253901 C T KIF16B Silent p.G502G 0.29 TCGA-OR-A5JV-01 20 48521998 48521998 G A SPATA2 3'UTR 0.36 TCGA-OR-A5JV-01 20 57036492 57036492 G A APCDD1L Missense_Mutation p.S287L 0.15 tolerated(0.32) benign(0.091) TCGA-OR-A5JV-01 20 60966395 60966395 C A CABLES2 Missense_Mutation p.Q402H 0.16 tolerated(0.07) benign(0.33) TCGA-OR-A5JV-01 20 61537287 61537287 C G DIDO1 Missense_Mutation p.V514L 0.31 probably_damaging(0.994) TCGA-OR-A5JV-01 21 42838008 42838008 G A TMPRSS2 3'UTR 0.38 TCGA-OR-A5JV-01 3 113187717 113187717 T C SPICE1 Missense_Mutation p.R261G 0.21 deleterious(0.01) benign(0.039) TCGA-OR-A5JV-01 3 164709159 164709159 G C SI Missense_Mutation p.A1697G 0.21 tolerated(0.17) benign(0.018) TCGA-OR-A5JV-01 3 183225850 183225850 A T KLHL6 Missense_Mutation p.N302K 0.16 tolerated(0.42) benign(0.004) TCGA-OR-A5JV-01 3 195510833 195510833 G A MUC4 Missense_Mutation p.R2540C 0.34 benign(0.029) TCGA-OR-A5JV-01 3 77526667 77526667 C G ROBO2 Missense_Mutation p.T180S 0.12 tolerated(0.34) benign(0.238) TCGA-OR-A5JV-01 4 153889150 153889150 G A FHDC1 Silent p.T373T 0.24 TCGA-OR-A5JV-01 4 56458343 56458343 C G PDCL2 5'UTR 0.23 TCGA-OR-A5JV-01 4 65145874 65145874 C A TECRL Missense_Mutation p.W336C 0.21 deleterious(0.02) probably_damaging(1) TCGA-OR-A5JV-01 4 72319242 72319242 G T SLC4A4 Missense_Mutation p.K451N 0.38 deleterious(0) possibly_damaging(0.517) TCGA-OR-A5JV-01 5 109849600 109849600 G C TMEM232 Intron 0.28 TCGA-OR-A5JV-01 5 147480929 147480929 A G SPINK5 Missense_Mutation p.E411G 0.15 tolerated(0.15) benign(0.043) TCGA-OR-A5JV-01 5 55395985 55395985 C G ANKRD55 3'UTR 0.17 TCGA-OR-A5JV-01 6 51695775 51695775 G C PKHD1 Missense_Mutation p.A2729G 0.64 tolerated(0.18) benign(0.282) TCGA-OR-A5JV-01 7 148823351 148823351 G A ZNF425 5'UTR 0.35 TCGA-OR-A5JV-01 7 33388714 33388714 C A BBS9 Missense_Mutation p.A455D 0.18 deleterious(0.01) possibly_damaging(0.674) TCGA-OR-A5JV-01 7 6590955 6590955 G A GRID2IP Missense_Mutation p.A38V 0.37 deleterious(0) possibly_damaging(0.871) TCGA-OR-A5JV-01 8 3889601 3889601 C A CSMD1 Nonsense_Mutation p.G146* 0.16 TCGA-OR-A5JW-01 10 45938628 45938628 G T ALOX5 Missense_Mutation p.R472L 0.42 deleterious(0.05) probably_damaging(0.99) TCGA-OR-A5JW-01 10 93024204 93024204 A G PCGF5 Missense_Mutation p.N197S 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-OR-A5JW-01 11 102595542 102595542 C A MMP8 Silent p.V15V 0.17 TCGA-OR-A5JW-01 12 118619354 118619354 C T TAOK3 Missense_Mutation p.G463D 0.18 deleterious(0) probably_damaging(0.968) TCGA-OR-A5JW-01 12 122684857 122684857 G A LRRC43 Missense_Mutation p.V491M 0.34 deleterious(0) probably_damaging(0.981) TCGA-OR-A5JW-01 12 13716624 13716624 G A GRIN2B Missense_Mutation p.T1183M 0.44 tolerated(0.1) benign(0.102) TCGA-OR-A5JW-01 12 55846284 55846284 C G OR6C2 Missense_Mutation p.A96G 0.34 tolerated_low_confidence(0.21) benign(0.065) TCGA-OR-A5JW-01 12 93226501 93226501 T C EEA1 Silent p.Q347Q 0.06 TCGA-OR-A5JW-01 13 103387768 103387768 G A CCDC168 Silent p.N464N 0.03 TCGA-OR-A5JW-01 13 42761266 42761289 TGATGCCGTGGCCAGTAAAGTAAG - DGKH Splice_Site p.X540_splice 0.60 TCGA-OR-A5JW-01 13 46050394 46050394 C T COG3 Missense_Mutation p.S78L 0.66 tolerated(0.13) benign(0.004) TCGA-OR-A5JW-01 15 24925726 24925729 ACAG - NPAP1 3'UTR 0.62 TCGA-OR-A5JW-01 15 34648579 34648579 G T NUTM1 Silent p.L762L 0.43 TCGA-OR-A5JW-01 15 78894294 78894294 G T CHRNA3 Missense_Mutation p.D230E 0.34 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JW-01 16 16256886 16256886 C A ABCC6 Missense_Mutation p.S1157I 0.43 deleterious(0) benign(0.222) TCGA-OR-A5JW-01 16 21061229 21061229 A T DNAH3 Splice_Site p.X1449_splice 0.39 TCGA-OR-A5JW-01 16 30677859 30677859 G C FBRS Missense_Mutation p.L600F 0.33 probably_damaging(0.981) TCGA-OR-A5JW-01 16 5115841 5115841 C T C16orf89 Silent p.L23L 0.40 TCGA-OR-A5JW-01 17 74154491 74154491 C T RNF157 Missense_Mutation p.V466I 0.07 tolerated_low_confidence(0.16) benign(0.017) TCGA-OR-A5JW-01 19 17983255 17983255 A G SLC5A5 Missense_Mutation p.S43G 0.40 deleterious(0) benign(0.026) TCGA-OR-A5JW-01 19 42855429 42855429 G A MEGF8 Missense_Mutation p.R866Q 0.45 tolerated(0.11) probably_damaging(0.977) TCGA-OR-A5JW-01 19 56459217 56459217 C A NLRP8 5'UTR 0.41 TCGA-OR-A5JW-01 19 814975 814975 G A LPPR3 Silent p.Y170Y 0.40 TCGA-OR-A5JW-01 19 9362064 9362064 C A OR7E24 Nonsense_Mutation p.C115* 0.44 TCGA-OR-A5JW-01 20 37356245 37356245 C T SLC32A1 Missense_Mutation p.R181C 0.46 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JW-01 3 38519421 38519421 C T ACVR2B Silent p.N110N 0.82 TCGA-OR-A5JW-01 3 98001912 98001912 C A OR5H2 Missense_Mutation p.H61N 0.74 deleterious(0) probably_damaging(0.95) TCGA-OR-A5JW-01 4 164393463 164393463 C T TKTL2 Missense_Mutation p.R475Q 0.40 deleterious(0.01) probably_damaging(0.974) TCGA-OR-A5JW-01 4 57181586 57181586 C T KIAA1211 Nonsense_Mutation p.R640* 0.51 TCGA-OR-A5JW-01 5 132069983 132069983 G T KIF3A Missense_Mutation p.T65N 0.27 tolerated(0.38) possibly_damaging(0.727) TCGA-OR-A5JW-01 7 18066907 18066907 T A PRPS1L1 Missense_Mutation p.I167F 0.33 deleterious(0) possibly_damaging(0.679) TCGA-OR-A5JW-01 7 44560705 44560705 C G NPC1L1 Missense_Mutation p.C989S 0.41 deleterious(0.03) probably_damaging(0.987) TCGA-OR-A5JW-01 7 50136067 50136067 C T C7orf72 Missense_Mutation p.T129I 0.51 deleterious(0.01) benign(0.221) TCGA-OR-A5JW-01 7 91646396 91646396 C A AKAP9 Missense_Mutation p.L1273I 0.34 possibly_damaging(0.742) TCGA-OR-A5JW-01 9 121929775 121929775 G T BRINP1 Missense_Mutation p.L625I 0.86 tolerated(0.23) benign(0.002) TCGA-OR-A5JW-01 X 79975000 79975000 A T BRWD3 Missense_Mutation p.S678T 0.13 tolerated(0.44) benign(0.077) TCGA-OR-A5JW-01 X 91132451 91132451 C A PCDH11X Silent p.I404I 0.87 TCGA-OR-A5JX-01 10 133951636 133951636 T A JAKMIP3 Missense_Mutation p.L433Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-OR-A5JX-01 11 73829294 73829294 C G C2CD3 Missense_Mutation p.R500T 0.20 tolerated(0.2) benign(0.005) TCGA-OR-A5JX-01 11 73829313 73829313 C T C2CD3 Missense_Mutation p.D494N 0.21 tolerated(0.21) benign(0.05) TCGA-OR-A5JX-01 12 41966628 41966628 A G PDZRN4 Missense_Mutation p.I683V 0.26 tolerated(0.08) probably_damaging(0.977) TCGA-OR-A5JX-01 12 50400412 50400412 G A RACGAP1 Silent p.I31I 0.11 TCGA-OR-A5JX-01 12 75892747 75892747 C G GLIPR1 Missense_Mutation p.L264V 0.07 deleterious(0.03) benign(0.192) TCGA-OR-A5JX-01 13 42874405 42874405 A G AKAP11 Missense_Mutation p.H508R 0.27 tolerated(0.36) benign(0.142) TCGA-OR-A5JX-01 13 49281360 49281360 G A CYSLTR2 Missense_Mutation p.R136H 0.26 deleterious(0.01) possibly_damaging(0.696) TCGA-OR-A5JX-01 14 45403706 45403706 T C KLHL28 Missense_Mutation p.I319V 0.38 tolerated(0.69) benign(0) TCGA-OR-A5JX-01 14 45639809 45639809 C A FANCM Missense_Mutation p.L674I 0.33 tolerated(0.49) benign(0.011) TCGA-OR-A5JX-01 14 96800204 96800204 G C ATG2B Missense_Mutation p.S343C 0.38 deleterious(0.04) probably_damaging(0.924) TCGA-OR-A5JX-01 16 19492710 19492710 G C TMC5 Silent p.L762L 0.20 TCGA-OR-A5JX-01 16 3169885 3169896 CACCCACCAGGG - ZNF205 In_Frame_Del p.Q411_H414del 0.50 TCGA-OR-A5JX-01 17 16630974 16630974 T A CCDC144A Missense_Mutation p.N675K 0.13 tolerated(1) benign(0) TCGA-OR-A5JX-01 19 39214253 39214253 G T ACTN4 Splice_Site p.X481_splice 0.23 TCGA-OR-A5JX-01 19 42603760 42603760 C T POU2F2 Silent p.P140P 0.20 TCGA-OR-A5JX-01 1 145560086 145560086 T C ANKRD35 Missense_Mutation p.I191T 0.43 deleterious(0) possibly_damaging(0.803) TCGA-OR-A5JX-01 1 193119482 193119482 T G CDC73 Missense_Mutation p.Y293D 0.43 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JX-01 20 43727858 43727858 C T KCNS1 Missense_Mutation p.R7Q 0.19 tolerated_low_confidence(1) benign(0) TCGA-OR-A5JX-01 20 58441568 58441568 T G SYCP2 Missense_Mutation p.H1401P 0.22 deleterious(0.04) possibly_damaging(0.663) TCGA-OR-A5JX-01 2 47403714 47403714 T C CALM2 5'UTR 0.48 TCGA-OR-A5JX-01 3 160148837 160148837 C G SMC4 Missense_Mutation p.I986M 0.31 tolerated(0.28) benign(0.027) TCGA-OR-A5JX-01 4 106159460 106159460 G A TET2 Intron 0.30 TCGA-OR-A5JX-01 4 166981201 166981201 C A TLL1 Missense_Mutation p.T623N 0.16 tolerated(0.11) benign(0.059) TCGA-OR-A5JX-01 4 173961210 173961210 A G GALNTL6 Missense_Mutation p.M589V 0.27 tolerated(0.29) benign(0.001) TCGA-OR-A5JX-01 4 183609360 183609360 G C TENM3 Missense_Mutation p.G693R 0.45 tolerated(0.11) probably_damaging(0.996) TCGA-OR-A5JX-01 4 183710523 183710523 G A TENM3 Missense_Mutation p.S1861N 0.25 deleterious(0.02) possibly_damaging(0.483) TCGA-OR-A5JX-01 4 42466787 42466787 G A ATP8A1 Missense_Mutation p.H847Y 0.25 deleterious(0) benign(0.197) TCGA-OR-A5JX-01 4 89589214 89589214 A T HERC3 Missense_Mutation p.N539Y 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-OR-A5JX-01 5 168006339 168006339 C A PANK3 5'UTR 0.07 TCGA-OR-A5JX-01 5 53839018 53839018 C A SNX18 Missense_Mutation p.T544N 0.32 tolerated(0.08) probably_damaging(0.943) TCGA-OR-A5JX-01 5 93111872 93111872 G A FAM172A Silent p.V367V 0.14 TCGA-OR-A5JX-01 6 26408132 26408132 A T BTN3A1 Nonsense_Mutation p.R223* 0.05 TCGA-OR-A5JX-01 6 75968594 75968594 G A TMEM30A Missense_Mutation p.A265V 0.06 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JX-01 7 122056123 122056123 G C CADPS2 Missense_Mutation p.H858D 0.19 deleterious(0) probably_damaging(0.965) TCGA-OR-A5JX-01 7 123105042 123105042 G A IQUB Nonsense_Mutation p.Q535* 0.16 TCGA-OR-A5JX-01 7 42971992 42971992 C T MRPL32 Silent p.L3L 0.23 TCGA-OR-A5JX-01 8 121290694 121290694 C T COL14A1 Nonsense_Mutation p.R1120* 0.18 TCGA-OR-A5JX-01 9 87570307 87570307 C G NTRK2 Missense_Mutation p.L683V 0.23 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JX-01 X 30873289 30873289 T C TAB3 Missense_Mutation p.T165A 0.45 tolerated(0.91) benign(0.053) TCGA-OR-A5JX-01 X 31792220 31792220 A G DMD Silent p.L2467L 0.09 TCGA-OR-A5JX-01 X 49099775 49099775 C T CCDC22 Silent p.P187P 0.46 TCGA-OR-A5JY-01 11 118368752 118368752 G C KMT2A Missense_Mutation p.K1922N 0.20 probably_damaging(0.969) TCGA-OR-A5JY-01 11 65089555 65089556 CT A CDC42EP2 3'UTR 0.34 TCGA-OR-A5JY-01 11 67046987 67046987 G A ADRBK1 Silent p.S121S 0.11 TCGA-OR-A5JY-01 11 69514323 69514323 A C FGF19 Missense_Mutation p.C120G 0.09 deleterious(0) probably_damaging(1) TCGA-OR-A5JY-01 11 84245704 84245704 C A DLG2 Missense_Mutation p.G143V 0.18 tolerated(0.09) probably_damaging(0.988) TCGA-OR-A5JY-01 12 101584302 101584302 G A SLC5A8 Silent p.V259V 0.03 TCGA-OR-A5JY-01 12 102091784 102091784 T G CHPT1 Missense_Mutation p.Y49D 0.27 deleterious(0) possibly_damaging(0.774) TCGA-OR-A5JY-01 12 109055859 109055862 TCTT - CORO1C Frame_Shift_Del p.K131Efs*36 0.24 TCGA-OR-A5JY-01 12 123741386 123741386 G T C12orf65 Missense_Mutation p.Q103H 0.15 tolerated(0.07) benign(0.111) TCGA-OR-A5JY-01 12 26377283 26377283 G A SSPN Missense_Mutation p.E113K 0.18 deleterious(0) probably_damaging(0.995) TCGA-OR-A5JY-01 12 32135056 32135056 A G KIAA1551 Silent p.A389A 0.43 TCGA-OR-A5JY-01 12 4923212 4923212 T C KCNA6 3'UTR 0.22 TCGA-OR-A5JY-01 12 56755866 56755866 G C APOF Missense_Mutation p.Q42E 0.02 tolerated(0.12) benign(0.006) TCGA-OR-A5JY-01 12 6426579 6426579 G A PLEKHG6 Silent p.Q289Q 0.27 TCGA-OR-A5JY-01 12 6426809 6426809 G A PLEKHG6 Missense_Mutation p.A322T 0.20 deleterious(0.03) possibly_damaging(0.896) TCGA-OR-A5JY-01 12 6427086 6427086 G A PLEKHG6 Missense_Mutation p.E361K 0.23 tolerated(0.08) benign(0.062) TCGA-OR-A5JY-01 12 6427101 6427101 G A PLEKHG6 Missense_Mutation p.A366T 0.22 tolerated(0.14) benign(0.003) TCGA-OR-A5JY-01 12 6427146 6427146 G A PLEKHG6 Missense_Mutation p.D381N 0.21 deleterious(0) benign(0.424) TCGA-OR-A5JY-01 12 6464989 6464989 C G SCNN1A Missense_Mutation p.K370N 0.30 tolerated(0.17) benign(0.053) TCGA-OR-A5JY-01 12 69979230 69979230 G C CCT2 5'UTR 0.10 TCGA-OR-A5JY-01 14 102463457 102463457 A T DYNC1H1 Missense_Mutation p.E1217V 0.25 probably_damaging(0.987) TCGA-OR-A5JY-01 14 36840702 36840702 G C DPPA3P2 RNA 0.15 TCGA-OR-A5JY-01 14 81259323 81259323 C A CEP128 Silent p.L447L 0.18 TCGA-OR-A5JY-01 15 30659708 30659708 C G CHRFAM7A Missense_Mutation p.M211I 0.04 deleterious(0.02) probably_damaging(0.909) TCGA-OR-A5JY-01 15 75586797 75586797 C A GOLGA6D Missense_Mutation p.P688H 0.22 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JY-01 16 108431 108431 G A RHBDF1 Missense_Mutation p.P826S 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JY-01 16 71416647 71416647 G C CALB2 Missense_Mutation p.R123T 0.38 tolerated(0.21) probably_damaging(0.959) TCGA-OR-A5JY-01 17 4619770 4619770 C T ARRB2 Missense_Mutation p.S75F 0.45 deleterious(0) probably_damaging(0.996) TCGA-OR-A5JY-01 17 49354664 49354664 A T UTP18 Missense_Mutation p.R337S 0.22 deleterious(0) benign(0.282) TCGA-OR-A5JY-01 17 66519041 66519041 G T PRKAR1A Nonsense_Mutation p.E108* 0.61 TCGA-OR-A5JY-01 17 970425 970425 T C ABR Silent p.P358P 0.39 TCGA-OR-A5JY-01 18 28672247 28672247 G T DSC2 Nonsense_Mutation p.C57* 0.43 TCGA-OR-A5JY-01 18 65182061 65182061 A T DSEL 5'UTR 0.23 TCGA-OR-A5JY-01 19 10794811 10794811 G A ILF3 Intron 0.44 TCGA-OR-A5JY-01 19 40909675 40909676 CC - PRX Frame_Shift_Del p.G41Nfs*109 0.31 TCGA-OR-A5JY-01 19 4171861 4171861 T A CREB3L3 Missense_Mutation p.N427K 0.13 deleterious_low_confidence(0.01) benign(0.04) TCGA-OR-A5JY-01 19 48601409 48601409 C T PLA2G4C Silent p.E195E 0.27 TCGA-OR-A5JY-01 19 541584 541584 C T CDC34 3'UTR 0.17 TCGA-OR-A5JY-01 19 56973783 56973783 A G ZNF667 5'UTR 0.04 TCGA-OR-A5JY-01 1 152323852 152323852 C G FLG2 Missense_Mutation p.G2137A 0.25 possibly_damaging(0.777) TCGA-OR-A5JY-01 1 186147583 186147583 G C HMCN1 Missense_Mutation p.A5327P 0.51 probably_damaging(0.992) TCGA-OR-A5JY-01 1 203452909 203452909 C T PRELP Silent p.L199L 0.44 TCGA-OR-A5JY-01 1 29424397 29424397 G A EPB41 Missense_Mutation p.V755I 0.55 tolerated(0.11) probably_damaging(0.997) TCGA-OR-A5JY-01 1 35228261 35228261 C G GJB4 3'UTR 0.24 TCGA-OR-A5JY-01 1 60299091 60299091 G C HOOK1 Missense_Mutation p.Q96H 0.09 tolerated(0.1) benign(0.003) TCGA-OR-A5JY-01 1 68624824 68624824 G A WLS Silent p.C160C 0.47 TCGA-OR-A5JY-01 20 30388862 30388862 C T TPX2 Silent p.F741F 0.25 TCGA-OR-A5JY-01 20 3954983 3954983 C A RNF24 Missense_Mutation p.G18W 0.19 tolerated_low_confidence(0.19) probably_damaging(0.984) TCGA-OR-A5JY-01 20 43550237 43550237 C T PABPC1L Silent p.A247A 0.38 TCGA-OR-A5JY-01 20 62839773 62839773 G T MYT1 Silent p.L408L 0.24 TCGA-OR-A5JY-01 21 31768658 31768658 C A KRTAP13-1 Missense_Mutation p.T85N 0.23 tolerated(0.28) benign(0.208) TCGA-OR-A5JY-01 21 35475076 35475076 A G SLC5A3 3'UTR 0.33 TCGA-OR-A5JY-01 21 45666395 45666395 T C DNMT3L Missense_Mutation p.N350S 0.25 tolerated(0.69) benign(0.001) TCGA-OR-A5JY-01 22 44893294 44893294 G A LDOC1L Missense_Mutation p.A48V 0.93 deleterious(0.01) possibly_damaging(0.873) TCGA-OR-A5JY-01 2 133540078 133540078 T C NCKAP5 Missense_Mutation p.T1436A 0.09 tolerated(0.6) benign(0.014) TCGA-OR-A5JY-01 2 144764748 144764748 C A GTDC1 Splice_Site p.X292_splice 0.46 TCGA-OR-A5JY-01 2 168098406 168098406 G T XIRP2 Missense_Mutation p.A388S 0.09 benign(0.121) TCGA-OR-A5JY-01 2 179170900 179170901 - T OSBPL6 5'UTR 0.30 TCGA-OR-A5JY-01 2 196933484 196933484 C G DNAH7 5'UTR 0.43 TCGA-OR-A5JY-01 2 21226106 21226106 G T APOB Missense_Mutation p.A4063D 0.18 possibly_damaging(0.708) TCGA-OR-A5JY-01 2 241728660 241728660 T A KIF1A Missense_Mutation p.H59L 0.19 deleterious(0) benign(0.379) TCGA-OR-A5JY-01 2 3392328 3392328 C T TRAPPC12 Missense_Mutation p.P312S 0.34 deleterious(0.03) probably_damaging(0.925) TCGA-OR-A5JY-01 2 36764534 36764534 G C CRIM1 Missense_Mutation p.G823A 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5JY-01 2 84908502 84908502 A G DNAH6 Missense_Mutation p.S2256G 0.28 tolerated(0.36) benign(0.005) TCGA-OR-A5JY-01 3 142286929 142286929 G A ATR Missense_Mutation p.R43W 0.52 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-OR-A5JY-01 3 185212464 185212464 G A TMEM41A Missense_Mutation p.S174L 0.06 tolerated(0.13) benign(0.298) TCGA-OR-A5JY-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.53 deleterious(0) probably_damaging(0.939) TCGA-OR-A5JY-01 3 42577654 42577654 C T VIPR1 Missense_Mutation p.R419W 0.31 deleterious(0.02) possibly_damaging(0.453) TCGA-OR-A5JY-01 3 53269001 53269001 G A TKT Silent p.F217F 0.45 TCGA-OR-A5JY-01 3 69134116 69134116 C T ARL6IP5 5'UTR 0.55 TCGA-OR-A5JY-01 4 108853207 108853216 GCGCGAGGCG - CYP2U1 Frame_Shift_Del p.R137Wfs*20 0.25 TCGA-OR-A5JY-01 4 152498948 152498948 C T FAM160A1 Missense_Mutation p.S151L 0.35 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JY-01 4 153243968 153243968 T C FBXW7 3'UTR 0.65 TCGA-OR-A5JY-01 4 156618116 156618116 G A GUCY1A3 Missense_Mutation p.A33T 0.25 tolerated(0.44) benign(0.017) TCGA-OR-A5JY-01 4 15982079 15982079 A C PROM1 Missense_Mutation p.Y819D 0.05 deleterious(0) probably_damaging(0.998) TCGA-OR-A5JY-01 4 71394907 71394907 A G AMTN Missense_Mutation p.I113V 0.62 tolerated(0.36) benign(0.352) TCGA-OR-A5JY-01 4 88767172 88767172 A T MEPE Missense_Mutation p.K384N 0.13 deleterious(0) possibly_damaging(0.894) TCGA-OR-A5JY-01 5 140186688 140186688 C A PCDHA4 5'Flank 0.29 TCGA-OR-A5JY-01 5 140476931 140476931 G - PCDHB2 3'UTR 0.09 TCGA-OR-A5JY-01 5 41143080 41143080 C A C6 Missense_Mutation p.L884F 0.14 tolerated(0.11) benign(0.086) TCGA-OR-A5JY-01 5 79028141 79028141 G A CMYA5 Missense_Mutation p.E1185K 0.12 benign(0.037) TCGA-OR-A5JY-01 6 100054904 100054904 G T PRDM13 5'UTR 0.04 TCGA-OR-A5JY-01 6 139498189 139498189 G A HECA Missense_Mutation p.D527N 0.31 deleterious(0) benign(0.391) TCGA-OR-A5JY-01 6 26027447 26027447 C G HIST1H4B Missense_Mutation p.G12R 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-OR-A5JY-01 6 35773835 35773835 T G LHFPL5 Missense_Mutation p.C130G 0.15 deleterious(0) probably_damaging(0.999) TCGA-OR-A5JY-01 6 51920447 51920447 G A PKHD1 Nonsense_Mutation p.R592* 0.33 TCGA-OR-A5JY-01 6 73000415 73000415 C T RIMS1 Silent p.H1196H 0.10 TCGA-OR-A5JY-01 7 142567581 142567581 T C EPHB6 Silent p.C823C 0.10 TCGA-OR-A5JY-01 7 150704089 150704089 C G NOS3 Missense_Mutation p.L645V 0.11 tolerated(1) benign(0.183) TCGA-OR-A5JY-01 7 38288933 38288933 G A TRGC2 Missense_Mutation p.S81L 0.12 deleterious(0) probably_damaging(0.991) TCGA-OR-A5JY-01 7 47408816 47408816 T A TNS3 Missense_Mutation p.D476V 0.18 deleterious(0) probably_damaging(1) TCGA-OR-A5JY-01 8 106814462 106814462 C G ZFPM2 Missense_Mutation p.L718V 0.48 tolerated(0.25) benign(0.036) TCGA-OR-A5JY-01 8 11689040 11689040 C T FDFT1 Missense_Mutation p.A298V 0.58 deleterious(0.03) probably_damaging(0.96) TCGA-OR-A5JY-01 8 29996184 29996184 C T MBOAT4 Missense_Mutation p.A70T 0.21 tolerated(0.75) benign(0.002) TCGA-OR-A5JY-01 8 82606283 82606283 G C SLC10A5 Missense_Mutation p.L309V 0.40 deleterious(0.03) possibly_damaging(0.802) TCGA-OR-A5JY-01 9 114246951 114246951 T C KIAA0368 Silent p.K25K 0.18 TCGA-OR-A5JY-01 9 116060043 116060043 G A RNF183 Missense_Mutation p.T141M 0.19 tolerated(0.11) benign(0.001) TCGA-OR-A5JY-01 9 35752652 35752652 C A RGP1 Silent p.S319S 0.28 TCGA-OR-A5JY-01 9 86920229 86920229 C T SLC28A3 Missense_Mutation p.G92S 0.35 tolerated(0.49) benign(0.007) TCGA-OR-A5JY-01 9 95233050 95233050 G T ASPN Silent p.V96V 0.36 TCGA-OR-A5JY-01 X 1413336 1413336 G T CSF2RA Missense_Mutation p.Q254H 0.44 deleterious(0) probably_damaging(0.99) TCGA-OR-A5JY-01 X 23018850 23018850 G A DDX53 Missense_Mutation p.A226T 0.29 deleterious(0) probably_damaging(0.982) TCGA-OR-A5JY-01 X 53106284 53106284 G C GPR173 Missense_Mutation p.D161H 0.19 deleterious(0.01) possibly_damaging(0.86) TCGA-OR-A5JY-01 X 78427526 78427526 T C GPR174 3'UTR 0.24 TCGA-OR-A5JZ-01 10 13154589 13154589 A G OPTN Missense_Mutation p.N169S 0.87 tolerated(0.07) benign(0.017) TCGA-OR-A5JZ-01 10 96702250 96702250 G A CYP2C9 Intron 1.00 TCGA-OR-A5JZ-01 13 21715115 21715115 G A SAP18 Missense_Mutation p.E74K 0.90 deleterious(0.02) possibly_damaging(0.651) TCGA-OR-A5JZ-01 16 69148594 69148594 C T HAS3 Missense_Mutation p.R363W 0.04 deleterious(0) probably_damaging(0.915) TCGA-OR-A5JZ-01 19 17985536 17985536 C T SLC5A5 Missense_Mutation p.A180V 0.84 deleterious(0) benign(0.217) TCGA-OR-A5JZ-01 19 52249666 52249666 G A FPR1 Silent p.A194A 0.91 TCGA-OR-A5JZ-01 1 16577408 16577408 C T FBXO42 Silent p.Q637Q 0.56 TCGA-OR-A5JZ-01 1 248756893 248756893 C T OR2T10 Missense_Mutation p.M59I 0.07 deleterious(0) possibly_damaging(0.881) TCGA-OR-A5JZ-01 20 16712857 16712857 T C SNRPB2 Missense_Mutation p.V38A 0.43 deleterious(0.01) benign(0.314) TCGA-OR-A5JZ-01 20 49510967 49510967 T C ADNP Missense_Mutation p.N95S 0.46 tolerated(0.09) probably_damaging(0.969) TCGA-OR-A5JZ-01 2 125262113 125262113 G A CNTNAP5 Missense_Mutation p.R435H 0.17 tolerated(0.22) benign(0.001) TCGA-OR-A5JZ-01 4 46252483 46252483 G T GABRA2 Missense_Mutation p.P400T 0.06 tolerated(0.12) benign(0.023) TCGA-OR-A5JZ-01 4 79351450 79351450 T C FRAS1 Silent p.L1616L 0.83 TCGA-OR-A5JZ-01 5 127595027 127595027 G A FBN2 3'UTR 0.44 TCGA-OR-A5JZ-01 6 147525733 147525733 A T STXBP5 Missense_Mutation p.Q22L 0.60 deleterious(0.02) benign(0.004) TCGA-OR-A5JZ-01 6 46129455 46129455 T A ENPP5 Missense_Mutation p.M348L 0.91 deleterious(0.01) probably_damaging(0.986) TCGA-OR-A5JZ-01 7 27219361 27219361 A G RP1-170O19.20 5'UTR 0.85 TCGA-OR-A5JZ-01 7 43483926 43483943 AGAGTCCTCTGAGAGCTG - HECW1 In_Frame_Del p.E386_W391del 0.89 TCGA-OR-A5JZ-01 8 12957772 12957772 A G DLC1 Silent p.L692L 0.43 TCGA-OR-A5JZ-01 8 139729081 139729081 C T COL22A1 Missense_Mutation p.R796Q 0.42 benign(0.396) TCGA-OR-A5JZ-01 X 134993856 134993856 G A SAGE1 Missense_Mutation p.M755I 0.90 tolerated(0.38) benign(0.049) TCGA-OR-A5K0-01 10 103371096 103371097 AT - FBXW4 Frame_Shift_Del p.Y397Cfs*97 0.35 TCGA-OR-A5K0-01 11 117335893 117335893 G T DSCAML1 Silent p.P1070P 0.05 TCGA-OR-A5K0-01 11 121028854 121028854 C T TECTA Missense_Mutation p.P1537L 0.87 tolerated(0.1) possibly_damaging(0.801) TCGA-OR-A5K0-01 11 63994397 63994397 G A NUDT22 Silent p.L91L 0.55 TCGA-OR-A5K0-01 11 65314984 65314984 T A LTBP3 Missense_Mutation p.N678I 0.45 deleterious(0) benign(0.119) TCGA-OR-A5K0-01 11 70544812 70544812 C T SHANK2 Missense_Mutation p.D613N 0.43 deleterious(0) probably_damaging(0.994) TCGA-OR-A5K0-01 12 112690349 112690349 G - HECTD4 Intron 0.31 TCGA-OR-A5K0-01 12 40943960 40943960 G T MUC19 Intron 0.49 TCGA-OR-A5K0-01 12 51685869 51685869 T A BIN2 Missense_Mutation p.N341Y 0.52 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-OR-A5K0-01 12 56398081 56398081 C A SUOX Missense_Mutation p.A303D 0.44 tolerated(0.61) benign(0.155) TCGA-OR-A5K0-01 12 9094386 9094386 G A M6PR 3'UTR 0.45 TCGA-OR-A5K0-01 13 77745686 77745689 ACAG - MYCBP2 Frame_Shift_Del p.S1873Lfs*2 0.53 TCGA-OR-A5K0-01 13 98658494 98658494 A G IPO5 Silent p.P554P 0.46 TCGA-OR-A5K0-01 14 39771394 39771394 C G CTAGE5 Missense_Mutation p.T291R 0.45 tolerated(0.1) possibly_damaging(0.598) TCGA-OR-A5K0-01 14 58833675 58833676 TA - ARID4A Frame_Shift_Del p.M1201Vfs*5 0.37 TCGA-OR-A5K0-01 14 86089505 86089505 C A FLRT2 Silent p.G549G 0.45 TCGA-OR-A5K0-01 14 94594238 94594240 AGA - IFI27L2 In_Frame_Del p.S97del 0.31 TCGA-OR-A5K0-01 15 25222108 25222108 G T SNRPN Missense_Mutation p.V118L 0.44 tolerated(0.19) benign(0.007) TCGA-OR-A5K0-01 15 44069077 44069078 AG - ELL3 Frame_Shift_Del p.L8Efs*15 0.34 TCGA-OR-A5K0-01 15 85326912 85326912 C G ZNF592 Missense_Mutation p.L336V 0.53 deleterious(0.04) benign(0.384) TCGA-OR-A5K0-01 16 23706392 23706392 G C ERN2 Silent p.V664V 0.45 TCGA-OR-A5K0-01 16 30582444 30582444 C T ZNF688 Missense_Mutation p.G66E 0.35 deleterious(0) probably_damaging(1) TCGA-OR-A5K0-01 17 3195043 3195043 T A OR3A1 Silent p.G278G 0.38 TCGA-OR-A5K0-01 17 40342700 40342700 C T GHDC Silent p.V410V 0.47 TCGA-OR-A5K0-01 17 48638951 48638951 C T CACNA1G Missense_Mutation p.A44V 0.53 tolerated(0.17) benign(0.001) TCGA-OR-A5K0-01 17 7476029 7476029 T A SENP3 3'Flank 0.36 TCGA-OR-A5K0-01 17 7842968 7842970 AGA - CNTROB In_Frame_Del p.E358del 0.50 TCGA-OR-A5K0-01 19 15839027 15839027 C T OR10H2 Silent p.P58P 0.33 TCGA-OR-A5K0-01 19 33355553 33355553 C T SLC7A9 Missense_Mutation p.G73R 0.42 deleterious(0) probably_damaging(1) TCGA-OR-A5K0-01 19 46914646 46914646 C T CCDC8 Silent p.Q474Q 0.51 TCGA-OR-A5K0-01 19 56901430 56901430 G A ZNF582 Silent p.L58L 0.41 TCGA-OR-A5K0-01 19 6906459 6906459 G T EMR1 Missense_Mutation p.C322F 0.07 deleterious(0.01) possibly_damaging(0.885) TCGA-OR-A5K0-01 19 964309 964309 C A ARID3A Nonsense_Mutation p.Y276* 0.32 TCGA-OR-A5K0-01 1 226252155 226252155 G C H3F3A Missense_Mutation p.G35R 0.96 deleterious_low_confidence(0.02) benign(0.013) TCGA-OR-A5K0-01 1 92712112 92712112 G C GLMN Missense_Mutation p.S587C 0.97 deleterious(0.03) benign(0.285) TCGA-OR-A5K0-01 20 29628289 29628289 A T FRG1B Silent p.I97I 0.04 TCGA-OR-A5K0-01 20 61472012 61472012 C T COL9A3 Silent p.I661I 0.44 TCGA-OR-A5K0-01 21 43954845 43954845 C G SLC37A1 Missense_Mutation p.A59G 0.46 tolerated(0.46) benign(0.001) TCGA-OR-A5K0-01 22 50720456 50720456 G A PLXNB2 Missense_Mutation p.P1058S 0.40 deleterious(0.01) probably_damaging(0.968) TCGA-OR-A5K0-01 2 125521704 125521704 T A CNTNAP5 Missense_Mutation p.F837Y 0.41 deleterious(0.04) benign(0.119) TCGA-OR-A5K0-01 2 157182154 157182154 G C NR4A2 3'UTR 0.45 TCGA-OR-A5K0-01 2 170667792 170667794 GTG - SSB In_Frame_Del p.S366_D367delinsN 0.40 TCGA-OR-A5K0-01 2 26502030 26502030 A T HADHB Missense_Mutation p.S220C 0.49 deleterious(0) possibly_damaging(0.676) TCGA-OR-A5K0-01 2 31489342 31489342 C A EHD3 Silent p.G460G 0.42 TCGA-OR-A5K0-01 2 98920228 98920228 C A VWA3B Missense_Mutation p.H1162N 0.44 tolerated(0.05) benign(0.008) TCGA-OR-A5K0-01 3 113655144 113655144 A G GRAMD1C Silent p.L496L 0.46 TCGA-OR-A5K0-01 3 121712436 121712436 G C ILDR1 Missense_Mutation p.S387C 0.97 tolerated(0.23) possibly_damaging(0.533) TCGA-OR-A5K0-01 3 138219606 138219606 T C CEP70 Missense_Mutation p.M447V 0.89 tolerated(0.13) benign(0.035) TCGA-OR-A5K0-01 3 150804785 150804785 C - MED12L Frame_Shift_Del p.Y25Tfs*15 0.50 TCGA-OR-A5K0-01 3 32995848 32995848 C T CCR4 Missense_Mutation p.R312C 0.38 deleterious(0) probably_damaging(0.935) TCGA-OR-A5K0-01 3 44794960 44794960 G A KIAA1143 Missense_Mutation p.T113I 0.10 deleterious(0.01) possibly_damaging(0.675) TCGA-OR-A5K0-01 4 186347045 186347045 G - UFSP2 5'UTR 0.35 TCGA-OR-A5K0-01 5 1244384 1244384 G A SLC6A18 Silent p.G464G 0.44 TCGA-OR-A5K0-01 5 140755561 140755561 G A PCDHGA6 Silent p.A637A 0.45 TCGA-OR-A5K0-01 5 167645355 167645355 G T TENM2 Missense_Mutation p.V1487F 0.52 tolerated(0.08) benign(0.07) TCGA-OR-A5K0-01 5 175774669 175774672 TTTC - KIAA1191 Frame_Shift_Del p.K283Nfs*14 0.51 TCGA-OR-A5K0-01 5 176024723 176024723 G T GPRIN1 Missense_Mutation p.P705T 0.49 tolerated(0.06) benign(0.372) TCGA-OR-A5K0-01 5 176825193 176825193 C T SLC34A1 Missense_Mutation p.P609L 0.60 tolerated(0.1) benign(0.002) TCGA-OR-A5K0-01 5 79030793 79030793 G T CMYA5 Missense_Mutation p.V2069F 0.11 benign(0.272) TCGA-OR-A5K0-01 5 88100446 88100446 T A MEF2C Missense_Mutation p.H76L 0.07 deleterious(0) probably_damaging(0.987) TCGA-OR-A5K0-01 6 105526424 105526424 C A LIN28B Silent p.P173P 0.47 TCGA-OR-A5K0-01 6 170033154 170033154 G A WDR27 Silent p.L704L 0.10 TCGA-OR-A5K0-01 6 39874187 39874189 CTC - MOCS1 3'UTR 0.47 TCGA-OR-A5K0-01 6 41652375 41652375 G T TFEB Silent p.R465R 0.49 TCGA-OR-A5K0-01 6 46657547 46657547 A G TDRD6 Missense_Mutation p.D561G 0.45 tolerated(0.3) benign(0.029) TCGA-OR-A5K0-01 6 82462393 82462393 T C FAM46A 5'UTR 0.42 TCGA-OR-A5K0-01 6 84904675 84904675 A G KIAA1009 Silent p.D318D 0.47 TCGA-OR-A5K0-01 7 112579732 112579732 C A C7orf60 Missense_Mutation p.R25L 0.54 tolerated_low_confidence(0.19) benign(0.113) TCGA-OR-A5K0-01 7 150772800 150772800 G T SLC4A2 Nonsense_Mutation p.E1137* 0.53 TCGA-OR-A5K0-01 7 44151812 44151812 G C AEBP1 Silent p.P703P 0.56 TCGA-OR-A5K0-01 7 55224349 55224349 G A EGFR Missense_Mutation p.R377K 0.57 tolerated(1) benign(0.001) TCGA-OR-A5K0-01 7 73462021 73462021 C G ELN Silent p.P220P 0.45 TCGA-OR-A5K0-01 8 100821724 100821724 T C VPS13B Missense_Mutation p.I2713T 0.42 deleterious(0) benign(0.415) TCGA-OR-A5K0-01 8 28654146 28654146 G A INTS9 Silent p.N257N 0.36 TCGA-OR-A5K0-01 8 6296613 6296613 C T MCPH1 Silent p.P192P 0.66 TCGA-OR-A5K0-01 8 66621324 66621324 G A MTFR1 3'UTR 0.38 TCGA-OR-A5K0-01 9 85605354 85605354 C T RASEF Missense_Mutation p.S690N 0.23 deleterious(0) probably_damaging(0.969) TCGA-OR-A5K0-01 9 88933891 88933894 ATTA - ZCCHC6 Frame_Shift_Del p.I1065Mfs*18 0.30 TCGA-OR-A5K0-01 X 30236700 30236700 G T MAGEB2 Translation_Start_Site p.M1? 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-OR-A5K0-01 X 38664927 38664927 G A MID1IP1 3'UTR 0.38 TCGA-OR-A5K0-01 X 51640148 51640148 G T MAGED1 Missense_Mutation p.R522L 0.48 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-OR-A5K0-01 X 53576374 53576374 A G HUWE1 Missense_Mutation p.F3194S 0.53 benign(0.307) TCGA-OR-A5K0-01 X 76939349 76939349 T A ATRX Nonsense_Mutation p.K467* 0.31 TCGA-OR-A5K1-01 12 16516930 16516933 TCTT - MGST1 Frame_Shift_Del p.L142Pfs*7 0.40 TCGA-OR-A5K1-01 12 49412616 49412616 C G PRKAG1 5'Flank 0.43 TCGA-OR-A5K1-01 12 7025042 7025042 G A ENO2 Missense_Mutation p.G16R 0.53 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-OR-A5K1-01 14 67578631 67578631 T C GPHN Silent p.D489D 0.79 TCGA-OR-A5K1-01 16 19547801 19547801 G - CCP110 Frame_Shift_Del p.A271Lfs*4 0.30 TCGA-OR-A5K1-01 16 81295920 81295920 C T BCMO1 Intron 0.41 TCGA-OR-A5K1-01 1 156810733 156810733 C T INSRR Missense_Mutation p.D1276N 0.05 deleterious(0.01) benign(0.002) TCGA-OR-A5K1-01 1 192335239 192335239 G T RGS21 Missense_Mutation p.W148C 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-OR-A5K1-01 1 55349290 55349290 C A DHCR24 Splice_Site p.X129_splice 0.07 TCGA-OR-A5K1-01 1 82418676 82418676 A G LPHN2 Intron 0.62 TCGA-OR-A5K1-01 20 61541101 61541101 C T DIDO1 Missense_Mutation p.E371K 0.03 probably_damaging(0.997) TCGA-OR-A5K1-01 2 48844972 48844972 G A GTF2A1L 5'Flank 0.76 TCGA-OR-A5K1-01 3 50379278 50379278 T A ZMYND10 Missense_Mutation p.S362C 0.07 deleterious(0) benign(0.438) TCGA-OR-A5K1-01 5 161277848 161277848 T A GABRA1 Missense_Mutation p.L11H 0.42 deleterious(0) possibly_damaging(0.67) TCGA-OR-A5K1-01 5 180275938 180275938 A T ZFP62 Missense_Mutation p.S853T 0.42 tolerated(0.07) probably_damaging(0.968) TCGA-OR-A5K1-01 6 73100417 73100417 A G RIMS1 Missense_Mutation p.N1495S 0.05 deleterious(0) probably_damaging(0.989) TCGA-OR-A5K1-01 8 72967768 72967768 C T TRPA1 Missense_Mutation p.G478S 0.40 tolerated(0.11) probably_damaging(1) TCGA-OR-A5K1-01 X 132159761 132159761 C G USP26 Missense_Mutation p.V830L 0.97 tolerated(0.1) possibly_damaging(0.479) TCGA-OR-A5K2-01 10 129871714 129871714 G A PTPRE Silent p.T526T 0.03 TCGA-OR-A5K2-01 10 135165979 135165979 C A PRAP1 3'UTR 0.25 TCGA-OR-A5K2-01 10 73466729 73466729 G A C10orf105 3'Flank 0.22 TCGA-OR-A5K2-01 10 99161096 99161096 C T RRP12 5'UTR 0.14 TCGA-OR-A5K2-01 11 65479768 65479768 G A KAT5 Silent p.G10G 0.40 TCGA-OR-A5K2-01 11 99942557 99942557 A C CNTN5 Missense_Mutation p.K474Q 0.25 deleterious(0.04) benign(0.304) TCGA-OR-A5K2-01 12 123741386 123741386 G C C12orf65 Missense_Mutation p.Q103H 0.08 tolerated(0.07) benign(0.111) TCGA-OR-A5K2-01 12 133249853 133249853 G C POLE Missense_Mutation p.T457R 0.18 deleterious(0.01) possibly_damaging(0.696) TCGA-OR-A5K2-01 12 21526316 21526316 A C IAPP Missense_Mutation p.I11L 0.13 tolerated(0.31) benign(0.001) TCGA-OR-A5K2-01 12 52159524 52159524 G T SCN8A Missense_Mutation p.V872L 0.18 tolerated(0.05) probably_damaging(0.998) TCGA-OR-A5K2-01 12 54967209 54967209 T C PDE1B Silent p.L303L 0.20 TCGA-OR-A5K2-01 12 56075903 56075903 T A METTL7B Missense_Mutation p.F122Y 0.10 deleterious(0) probably_damaging(0.925) TCGA-OR-A5K2-01 12 90018032 90018032 A T ATP2B1 Silent p.V424V 0.24 TCGA-OR-A5K2-01 13 101316489 101316489 G A TMTC4 Silent p.T107T 0.05 TCGA-OR-A5K2-01 14 105413351 105413351 A G AHNAK2 Missense_Mutation p.F2813L 0.23 possibly_damaging(0.765) TCGA-OR-A5K2-01 14 68191943 68191943 C T RDH12 Silent p.I105I 0.26 TCGA-OR-A5K2-01 14 68191958 68191958 G A RDH12 Silent p.E110E 0.24 TCGA-OR-A5K2-01 15 29346191 29346191 A G APBA2 Missense_Mutation p.E35G 0.21 deleterious_low_confidence(0.04) benign(0.097) TCGA-OR-A5K2-01 15 33358778 33358778 C G FMN1 Missense_Mutation p.E436D 0.27 tolerated(0.38) unknown(0) TCGA-OR-A5K2-01 16 21060895 21060895 T - DNAH3 Frame_Shift_Del p.I1486Sfs*3 0.12 TCGA-OR-A5K2-01 17 27022538 27022538 G C SUPT6H Missense_Mutation p.D1315H 0.39 deleterious(0.01) possibly_damaging(0.682) TCGA-OR-A5K2-01 17 34854393 34854393 G T MYO19 Missense_Mutation p.A825D 0.11 tolerated(0.34) benign(0.006) TCGA-OR-A5K2-01 17 39780504 39780504 G T KRT17 Silent p.A86A 0.06 TCGA-OR-A5K2-01 17 39913762 39913762 G A JUP Missense_Mutation p.R651C 0.08 deleterious(0.02) probably_damaging(1) TCGA-OR-A5K2-01 17 42255661 42255661 G C ASB16 Missense_Mutation p.R422P 0.33 tolerated(0.2) possibly_damaging(0.546) TCGA-OR-A5K2-01 17 79478286 79478286 C G ACTG1 Missense_Mutation p.D244H 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OR-A5K2-01 19 1049413 1049413 C T ABCA7 Silent p.N843N 0.51 TCGA-OR-A5K2-01 19 22362756 22362756 G A ZNF676 Missense_Mutation p.P588L 0.08 deleterious(0) possibly_damaging(0.595) TCGA-OR-A5K2-01 19 38851407 38851407 G A CATSPERG Missense_Mutation p.V602I 0.09 tolerated(0.4) benign(0.198) TCGA-OR-A5K2-01 19 42486218 42486218 T G ATP1A3 Missense_Mutation p.N358T 0.05 deleterious(0) probably_damaging(0.997) TCGA-OR-A5K2-01 19 50912024 50912024 C T POLD1 Intron 0.24 TCGA-OR-A5K2-01 19 51532678 51532678 G T KLK12 Silent p.V209V 0.43 TCGA-OR-A5K2-01 19 53912284 53912284 A G ZNF765 Silent p.K492K 0.19 TCGA-OR-A5K2-01 1 144821919 144821919 A G NBPF9 Splice_Site p.X287_splice 0.36 TCGA-OR-A5K2-01 1 161192812 161192812 C T APOA2 Silent p.E27E 0.33 TCGA-OR-A5K2-01 1 209905838 209905838 G T HSD11B1 Missense_Mutation p.G192V 0.36 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K2-01 1 233122169 233122169 G A PCNXL2 Missense_Mutation p.S1970F 0.07 deleterious(0.02) benign(0.274) TCGA-OR-A5K2-01 1 235345012 235345012 A C ARID4B Silent p.V1074V 0.27 TCGA-OR-A5K2-01 1 35365799 35365799 C T DLGAP3 Missense_Mutation p.G395S 0.33 tolerated(0.17) probably_damaging(0.998) TCGA-OR-A5K2-01 1 36767183 36767183 C T THRAP3 Silent p.G844G 0.32 TCGA-OR-A5K2-01 1 55181743 55181743 G T TTC4 Intron 0.11 TCGA-OR-A5K2-01 1 67591497 67591497 G C C1orf141 Silent p.S57S 0.22 TCGA-OR-A5K2-01 1 91979529 91979529 C A CDC7 Missense_Mutation p.Q283K 0.42 tolerated(0.22) possibly_damaging(0.776) TCGA-OR-A5K2-01 20 1456854 1456854 T A SIRPB2 Silent p.A329A 0.28 TCGA-OR-A5K2-01 20 3211402 3211402 C T SLC4A11 Missense_Mutation p.A463T 0.19 deleterious(0.04) possibly_damaging(0.538) TCGA-OR-A5K2-01 20 48494522 48494523 AT - SLC9A8 Frame_Shift_Del p.F379Cfs*9 0.16 TCGA-OR-A5K2-01 22 18293575 18293575 C T MICAL3 Missense_Mutation p.R1817K 0.28 benign(0.016) TCGA-OR-A5K2-01 22 18304242 18304242 G A MICAL3 Missense_Mutation p.P1161L 0.22 benign(0.025) TCGA-OR-A5K2-01 22 25115501 25115501 C T PIWIL3 Missense_Mutation p.V863M 0.33 deleterious(0) probably_damaging(0.965) TCGA-OR-A5K2-01 22 50969456 50969456 C G ODF3B Missense_Mutation p.L150F 0.39 deleterious(0.03) benign(0.272) TCGA-OR-A5K2-01 2 125660522 125660522 C G CNTNAP5 Missense_Mutation p.S1166C 0.46 deleterious(0) probably_damaging(0.953) TCGA-OR-A5K2-01 2 204735648 204735648 A G CTLA4 Missense_Mutation p.Y150C 0.06 deleterious(0) probably_damaging(0.97) TCGA-OR-A5K2-01 3 10491213 10491213 G C ATP2B2 Silent p.T5T 0.30 TCGA-OR-A5K2-01 3 140277631 140277631 T C CLSTN2 Missense_Mutation p.L658P 0.26 tolerated(0.07) benign(0.127) TCGA-OR-A5K2-01 3 37388682 37388682 A T GOLGA4 Splice_Site p.X2173_splice 0.18 TCGA-OR-A5K2-01 3 46307366 46307366 G C CCR3 Silent p.R260R 0.20 TCGA-OR-A5K2-01 3 58128391 58128391 C G FLNB Silent p.A1763A 0.21 TCGA-OR-A5K2-01 4 20270474 20270474 T C SLIT2 Missense_Mutation p.L122P 0.34 deleterious(0) possibly_damaging(0.717) TCGA-OR-A5K2-01 5 178359644 178359644 G A ZFP2 Missense_Mutation p.G444R 0.09 deleterious(0.01) probably_damaging(1) TCGA-OR-A5K2-01 6 138753527 138753527 G A NHSL1 Missense_Mutation p.S656F 0.57 deleterious(0.01) possibly_damaging(0.748) TCGA-OR-A5K2-01 6 147022084 147022084 G T ADGB Missense_Mutation p.V529L 0.20 tolerated(0.65) benign(0.002) TCGA-OR-A5K2-01 6 154533922 154533922 A T IPCEF1 Silent p.A173A 0.09 TCGA-OR-A5K2-01 6 25967015 25967015 C G TRIM38 Missense_Mutation p.Q89E 0.19 tolerated(0.89) benign(0.009) TCGA-OR-A5K2-01 6 33424462 33424462 C A ZBTB9 3'UTR 0.29 TCGA-OR-A5K2-01 6 74228419 74228421 ACC - EEF1A1 Splice_Site p.X258_splice 0.30 TCGA-OR-A5K2-01 7 134644847 134644847 A G CALD1 Silent p.A728A 0.21 TCGA-OR-A5K2-01 8 135622778 135622778 C A ZFAT Missense_Mutation p.R190I 0.07 tolerated(0.15) benign(0) TCGA-OR-A5K2-01 8 16032762 16032762 C T MSR1 Missense_Mutation p.A51T 0.28 tolerated(0.56) benign(0.011) TCGA-OR-A5K2-01 9 139324136 139324136 G A INPP5E Silent p.S642S 0.19 TCGA-OR-A5K2-01 9 74675429 74675429 G A C9orf57 5'UTR 0.11 TCGA-OR-A5K2-01 9 97355868 97355868 C T FBP2 Silent p.S47S 0.14 TCGA-OR-A5K2-01 X 111699103 111699103 A G ZCCHC16 3'UTR 0.10 TCGA-OR-A5K2-01 X 120183328 120183328 G A GLUD2 3'UTR 0.31 TCGA-OR-A5K2-01 X 17762302 17762303 - A SCML1 5'UTR p.M1? 0.12 TCGA-OR-A5K2-01 X 27765556 27765556 C A DCAF8L2 Missense_Mutation p.L182M 0.06 deleterious(0.04) possibly_damaging(0.891) TCGA-OR-A5K2-01 X 69424885 69424885 C A DGAT2L6 Missense_Mutation p.L315M 0.15 deleterious(0) probably_damaging(1) TCGA-OR-A5K2-01 X 83372103 83372103 C A RPS6KA6 Missense_Mutation p.R305M 0.31 deleterious(0.01) possibly_damaging(0.895) TCGA-OR-A5K3-01 11 5730589 5730589 C G TRIM22 Missense_Mutation p.P403R 0.81 deleterious(0) probably_damaging(1) TCGA-OR-A5K3-01 12 110765566 110765566 A G ATP2A2 Missense_Mutation p.N280S 0.48 tolerated(0.46) benign(0.005) TCGA-OR-A5K3-01 12 94641749 94641749 C T PLXNC1 Missense_Mutation p.T820M 0.48 tolerated(0.09) benign(0.042) TCGA-OR-A5K3-01 14 61190755 61190755 G A SIX4 Missense_Mutation p.A13V 0.42 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-OR-A5K3-01 16 84164035 84164035 A T HSDL1 Silent p.G74G 0.50 TCGA-OR-A5K3-01 19 17883278 17883278 A G FCHO1 Missense_Mutation p.M203V 0.47 tolerated(0.29) benign(0.005) TCGA-OR-A5K3-01 19 55856010 55856010 G T AC020922.1 5'UTR 0.40 TCGA-OR-A5K3-01 1 6488334 6488334 G C ESPN Missense_Mutation p.G115R 0.85 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K3-01 1 7725013 7725013 G A CAMTA1 Silent p.A802A 0.28 TCGA-OR-A5K3-01 4 3949453 3949453 C A FAM86EP RNA 0.27 TCGA-OR-A5K3-01 5 127626549 127626549 T G FBN2 Missense_Mutation p.N2107T 0.48 tolerated(0.15) benign(0.119) TCGA-OR-A5K3-01 5 180036020 180036020 A G FLT4 Missense_Mutation p.S1281P 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-OR-A5K3-01 5 7766806 7766806 C G ADCY2 Missense_Mutation p.L701V 0.44 tolerated(0.15) benign(0.005) TCGA-OR-A5K3-01 7 137761321 137761321 C A AKR1D1 Silent p.P19P 0.06 TCGA-OR-A5K3-01 7 30643172 30643172 A G GARS Missense_Mutation p.E240G 0.43 deleterious(0.02) benign(0.046) TCGA-OR-A5K3-01 8 37632983 37632983 C A PROSC Missense_Mutation p.P194Q 0.84 deleterious(0) possibly_damaging(0.791) TCGA-OR-A5K3-01 8 72123405 72123405 G C EYA1 Missense_Mutation p.Q562E 0.79 tolerated(0.27) probably_damaging(0.974) TCGA-OR-A5K3-01 9 107331706 107331706 G T OR13C8 Silent p.L86L 0.33 TCGA-OR-A5K3-01 9 133914550 133914550 A G LAMC3 Missense_Mutation p.T400A 0.80 tolerated(0.4) benign(0.03) TCGA-OR-A5K3-01 9 88968081 88968081 G A ZCCHC6 Missense_Mutation p.R12C 0.65 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-OR-A5K4-01 10 111633162 111633162 C T XPNPEP1 Missense_Mutation p.R472Q 0.88 deleterious(0) probably_damaging(1) TCGA-OR-A5K4-01 10 124458908 124458908 C T C10orf120 Missense_Mutation p.R66K 0.27 tolerated(1) benign(0.001) TCGA-OR-A5K4-01 10 21971185 21971185 C T MLLT10 Silent p.N566N 0.88 TCGA-OR-A5K4-01 10 23730881 23730881 T C OTUD1 3'UTR 0.46 TCGA-OR-A5K4-01 10 24832505 24832505 G A KIAA1217 Missense_Mutation p.V1436M 0.94 tolerated(0.09) probably_damaging(0.999) TCGA-OR-A5K4-01 10 30315257 30315257 G A KIAA1462 Silent p.L1274L 0.92 TCGA-OR-A5K4-01 10 34400183 34400183 G A PARD3 Missense_Mutation p.R1329W 0.93 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OR-A5K4-01 10 35928331 35928331 C T FZD8 Missense_Mutation p.R676Q 0.50 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-OR-A5K4-01 10 48428896 48428896 C T GDF10 Silent p.A330A 0.98 TCGA-OR-A5K4-01 10 64975209 64975209 A G JMJD1C Missense_Mutation p.Y277H 0.91 tolerated(0.08) possibly_damaging(0.626) TCGA-OR-A5K4-01 10 74235015 74235015 C T MICU1 Missense_Mutation p.R259H 0.95 deleterious(0) probably_damaging(0.987) TCGA-OR-A5K4-01 10 7608357 7608357 G A ITIH5 Silent p.N721N 0.89 TCGA-OR-A5K4-01 10 87379740 87379740 G A GRID1 Silent p.Y748Y 0.88 TCGA-OR-A5K4-01 10 95103662 95103662 C T MYOF Missense_Mutation p.R1426Q 0.93 tolerated(0.41) benign(0.004) TCGA-OR-A5K4-01 11 108098418 108098418 C T ATM Nonsense_Mutation p.R23* 0.92 TCGA-OR-A5K4-01 11 121458770 121458770 C T SORL1 Missense_Mutation p.R1286C 0.35 deleterious(0) possibly_damaging(0.726) TCGA-OR-A5K4-01 11 16838355 16838355 C T PLEKHA7 Missense_Mutation p.A620T 0.91 tolerated(0.48) benign(0.002) TCGA-OR-A5K4-01 11 18195449 18195449 G A MRGPRX4 Missense_Mutation p.V216M 0.92 tolerated(0.13) possibly_damaging(0.507) TCGA-OR-A5K4-01 11 5701024 5701024 C T TRIM5 Silent p.T128T 0.04 TCGA-OR-A5K4-01 11 57313434 57313434 G A SMTNL1 Missense_Mutation p.R351H 0.44 tolerated(0.1) possibly_damaging(0.629) TCGA-OR-A5K4-01 11 63531283 63531283 G A RTN3 3'Flank 0.89 TCGA-OR-A5K4-01 11 64127716 64127716 C T RPS6KA4 Missense_Mutation p.A70V 0.85 deleterious(0) probably_damaging(0.918) TCGA-OR-A5K4-01 11 65810719 65810719 G A GAL3ST3 Silent p.R185R 0.53 TCGA-OR-A5K4-01 11 66483354 66483354 G A SPTBN2 Missense_Mutation p.R86W 0.48 deleterious(0) probably_damaging(0.995) TCGA-OR-A5K4-01 11 9009807 9009807 C T NRIP3 Missense_Mutation p.R66K 0.89 tolerated(0.24) benign(0.007) TCGA-OR-A5K4-01 11 94340769 94340769 C T PIWIL4 Silent p.C601C 0.88 TCGA-OR-A5K4-01 12 114261020 114261020 G A RBM19 3'UTR 0.54 TCGA-OR-A5K4-01 12 117273985 117273985 G C RNFT2 Splice_Site p.X367_splice 0.42 TCGA-OR-A5K4-01 12 117465865 117465865 C T FBXW8 Missense_Mutation p.A562V 0.45 deleterious(0.02) benign(0.266) TCGA-OR-A5K4-01 12 120613993 120613993 G A GCN1L1 Missense_Mutation p.T289M 0.15 possibly_damaging(0.72) TCGA-OR-A5K4-01 12 122217484 122217484 G A RHOF Missense_Mutation p.R186W 0.52 deleterious(0) probably_damaging(0.984) TCGA-OR-A5K4-01 12 122261635 122261635 C T SETD1B Missense_Mutation p.T1674M 0.12 unknown(0) TCGA-OR-A5K4-01 12 123351799 123351799 G A VPS37B Missense_Mutation p.P241L 0.64 deleterious(0) probably_damaging(0.998) TCGA-OR-A5K4-01 12 124496674 124496674 C T ZNF664 5'UTR 0.34 TCGA-OR-A5K4-01 12 125626804 125626804 G A AACS 3'UTR 0.59 TCGA-OR-A5K4-01 12 13065508 13065508 C T GPRC5A 3'UTR 0.53 TCGA-OR-A5K4-01 12 133733564 133733564 G A ZNF10 3'UTR 0.43 TCGA-OR-A5K4-01 12 1906598 1906598 G A CACNA2D4 Silent p.C1033C 0.71 TCGA-OR-A5K4-01 12 21962829 21962829 A G ABCC9 Silent p.I1424I 0.38 TCGA-OR-A5K4-01 12 26493203 26493203 C T ITPR2 Missense_Mutation p.G2639D 0.40 tolerated(0.11) benign(0.022) TCGA-OR-A5K4-01 12 26784944 26784944 T C ITPR2 Missense_Mutation p.Q930R 0.41 tolerated(0.33) benign(0.196) TCGA-OR-A5K4-01 12 2937196 2937196 A G NRIP2 Missense_Mutation p.L199P 0.30 tolerated(0.33) benign(0.022) TCGA-OR-A5K4-01 12 34179891 34179892 - C ALG10 3'UTR 0.25 TCGA-OR-A5K4-01 12 45567092 45567092 C T PLEKHA8P1 RNA 0.42 TCGA-OR-A5K4-01 12 49420173 49420173 C T KMT2D Silent p.L5192L 0.47 TCGA-OR-A5K4-01 12 49483720 49483720 G A DHH Silent p.P371P 0.48 TCGA-OR-A5K4-01 12 49483989 49483989 C T DHH Missense_Mutation p.A282T 0.55 tolerated(0.61) benign(0.089) TCGA-OR-A5K4-01 12 52627326 52627326 C A KRT7 Silent p.P82P 0.43 TCGA-OR-A5K4-01 12 53088535 53088535 C T KRT77 Missense_Mutation p.V319I 0.50 deleterious(0.03) probably_damaging(0.996) TCGA-OR-A5K4-01 12 57389484 57389484 G A GPR182 Missense_Mutation p.R164H 0.08 tolerated(0.39) benign(0.013) TCGA-OR-A5K4-01 12 57581075 57581075 C A LRP1 Silent p.A2289A 0.43 TCGA-OR-A5K4-01 12 57584685 57584685 C T LRP1 Missense_Mutation p.R2377C 0.16 possibly_damaging(0.667) TCGA-OR-A5K4-01 12 57965871 57965871 G A KIF5A Missense_Mutation p.E464K 0.47 tolerated(0.06) benign(0.139) TCGA-OR-A5K4-01 12 62940761 62940761 G A MON2 Missense_Mutation p.V888M 0.45 tolerated(0.06) possibly_damaging(0.782) TCGA-OR-A5K4-01 12 6342621 6342621 C T CD9 Missense_Mutation p.A106V 0.50 deleterious(0.01) possibly_damaging(0.665) TCGA-OR-A5K4-01 12 69210628 69210628 C T MDM2 Nonsense_Mutation p.R71* 0.34 TCGA-OR-A5K4-01 12 6955058 6955058 C T CDCA3 3'Flank 0.45 TCGA-OR-A5K4-01 12 78515967 78515967 C T NAV3 Missense_Mutation p.P1333S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5K4-01 12 86377312 86377312 A G MGAT4C Missense_Mutation p.L95S 0.56 tolerated(0.22) benign(0.016) TCGA-OR-A5K4-01 12 88479859 88479859 C T CEP290 Missense_Mutation p.R1465Q 0.45 benign(0.021) TCGA-OR-A5K4-01 13 103701788 103701788 G A SLC10A2 Missense_Mutation p.T257M 0.07 deleterious(0) probably_damaging(0.998) TCGA-OR-A5K4-01 13 113516786 113516786 G A ATP11A Missense_Mutation p.R963H 0.94 tolerated(0.08) possibly_damaging(0.696) TCGA-OR-A5K4-01 13 30088674 30088674 C T SLC7A1 Silent p.A611A 0.97 TCGA-OR-A5K4-01 13 50204724 50204724 C T ARL11 Silent p.N47N 0.86 TCGA-OR-A5K4-01 14 105416412 105416412 G A AHNAK2 Silent p.D1792D 0.87 TCGA-OR-A5K4-01 14 21168316 21168316 C T RNASE4 3'UTR 0.89 TCGA-OR-A5K4-01 14 24631381 24631381 C T IRF9 Nonsense_Mutation p.R10* 0.91 TCGA-OR-A5K4-01 14 47120739 47120739 G A RPL10L Silent p.A67A 0.85 TCGA-OR-A5K4-01 14 52478319 52478319 C T NID2 Missense_Mutation p.R1168H 0.80 deleterious(0.01) probably_damaging(0.995) TCGA-OR-A5K4-01 14 59113818 59113818 G A DACT1 Missense_Mutation p.R826Q 0.91 deleterious(0) probably_damaging(0.921) TCGA-OR-A5K4-01 14 59970693 59970693 T C JKAMP Missense_Mutation p.L280P 0.08 deleterious(0) probably_damaging(0.985) TCGA-OR-A5K4-01 14 73743997 73743997 G A NUMB Silent p.T415T 0.71 TCGA-OR-A5K4-01 14 96134889 96134889 G A TCL6 Intron 0.86 TCGA-OR-A5K4-01 15 22940826 22940826 C T CYFIP1 Missense_Mutation p.A364V 0.88 deleterious(0.04) probably_damaging(0.943) TCGA-OR-A5K4-01 15 34396376 34396376 C T PGBD4 Silent p.Y548Y 0.90 TCGA-OR-A5K4-01 15 41063412 41063412 A G C15orf62 3'UTR 0.07 TCGA-OR-A5K4-01 15 45394110 45394110 G A DUOX2 Missense_Mutation p.S911L 0.88 deleterious(0.01) benign(0.439) TCGA-OR-A5K4-01 15 63063254 63063289 TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT - TLN2 In_Frame_Del p.L1764_L1775del 0.86 TCGA-OR-A5K4-01 15 65622120 65622120 G A IGDCC3 Silent p.I647I 0.30 TCGA-OR-A5K4-01 15 74632008 74632008 C T CYP11A1 Silent p.A359A 0.92 TCGA-OR-A5K4-01 15 79068601 79068601 G A ADAMTS7 Silent p.S545S 0.09 TCGA-OR-A5K4-01 15 79323771 79323771 G A RASGRF1 Silent p.Y411Y 0.95 TCGA-OR-A5K4-01 15 81271798 81271798 C T MESDC2 Missense_Mutation p.R156H 0.89 deleterious(0) probably_damaging(0.996) TCGA-OR-A5K4-01 15 99442820 99442820 G A IGF1R Missense_Mutation p.R406H 0.04 tolerated(0.1) benign(0.126) TCGA-OR-A5K4-01 16 1370575 1370575 G A UBE2I Intron 0.04 TCGA-OR-A5K4-01 16 2514193 2514193 G A C16orf59 Missense_Mutation p.R373Q 0.20 tolerated(0.11) possibly_damaging(0.889) TCGA-OR-A5K4-01 16 27483225 27483225 C T GTF3C1 Missense_Mutation p.R1457Q 0.46 tolerated(0.19) benign(0.031) TCGA-OR-A5K4-01 16 3021279 3021279 C T PAQR4 Silent p.S96S 0.46 TCGA-OR-A5K4-01 16 30594258 30594258 C T ZNF785 Missense_Mutation p.E281K 0.37 tolerated(0.24) benign(0.001) TCGA-OR-A5K4-01 16 31004545 31004545 C T STX1B Missense_Mutation p.R231H 0.44 deleterious(0.01) possibly_damaging(0.767) TCGA-OR-A5K4-01 16 31143831 31143831 G A PRSS8 Silent p.D208D 0.46 TCGA-OR-A5K4-01 16 3169354 3169354 C T ZNF205 Silent p.G231G 0.06 TCGA-OR-A5K4-01 16 3170139 3170139 C T ZNF205 Missense_Mutation p.A493V 0.54 deleterious(0.04) benign(0.351) TCGA-OR-A5K4-01 16 3191159 3191159 C T ZNF213 Silent p.G397G 0.42 TCGA-OR-A5K4-01 16 4505572 4505572 C T DNAJA3 3'UTR 0.46 TCGA-OR-A5K4-01 16 46697064 46697064 C T VPS35 Nonsense_Mutation p.W553* 0.42 TCGA-OR-A5K4-01 16 47644802 47644802 C T PHKB Missense_Mutation p.R477C 0.41 deleterious(0.02) probably_damaging(0.982) TCGA-OR-A5K4-01 16 4802835 4802835 C T ZNF500 Missense_Mutation p.E329K 0.46 deleterious(0.01) benign(0.023) TCGA-OR-A5K4-01 16 57775658 57775658 C T KATNB1 Missense_Mutation p.R34W 0.14 deleterious(0) probably_damaging(0.975) TCGA-OR-A5K4-01 16 66944294 66944294 C T CDH16 Missense_Mutation p.R679H 0.52 deleterious(0) probably_damaging(0.941) TCGA-OR-A5K4-01 16 66946627 66946627 G A CDH16 Nonsense_Mutation p.R408* 0.44 TCGA-OR-A5K4-01 16 66975 66975 C T WASH4P Missense_Mutation p.E221K 0.17 tolerated(0.12) benign(0.055) TCGA-OR-A5K4-01 16 67697371 67697371 G A ENKD1 Missense_Mutation p.R278C 0.45 tolerated(0.15) benign(0.008) TCGA-OR-A5K4-01 16 68732181 68732181 G A CDH3 Missense_Mutation p.A790T 0.07 tolerated(0.16) benign(0.047) TCGA-OR-A5K4-01 16 69373210 69373210 C T COG8 Silent p.L82L 0.52 TCGA-OR-A5K4-01 16 71976623 71976623 G A PKD1L3 RNA 0.49 TCGA-OR-A5K4-01 16 72108240 72108240 G A HPR Missense_Mutation p.R50H 0.45 tolerated(0.07) benign(0.028) TCGA-OR-A5K4-01 16 74491779 74491779 G A GLG1 Silent p.R1086R 0.19 TCGA-OR-A5K4-01 16 75665701 75665701 C T KARS Missense_Mutation p.R351Q 0.45 deleterious(0) probably_damaging(0.936) TCGA-OR-A5K4-01 16 857545 857545 C T PRR25 Missense_Mutation p.P181L 0.48 deleterious_low_confidence(0.02) benign(0.388) TCGA-OR-A5K4-01 16 86602305 86602305 A G FOXC2 Missense_Mutation p.N455S 0.51 tolerated(0.17) benign(0.006) TCGA-OR-A5K4-01 16 88763856 88763856 G A RNF166 3'UTR 0.51 TCGA-OR-A5K4-01 16 89346959 89346959 C T ANKRD11 Silent p.A1997A 0.47 TCGA-OR-A5K4-01 16 89611117 89611117 C T SPG7 Silent p.D462D 0.46 TCGA-OR-A5K4-01 17 1561614 1561614 C T PRPF8 Missense_Mutation p.R1813H 0.93 tolerated(0.17) probably_damaging(0.942) TCGA-OR-A5K4-01 17 18286644 18286644 C T EVPLL Silent p.D244D 0.97 TCGA-OR-A5K4-01 17 2265553 2265553 G A SGSM2 Silent p.A149A 0.93 TCGA-OR-A5K4-01 17 2598787 2598787 C T CLUH Missense_Mutation p.V770M 0.08 tolerated(1) benign(0.003) TCGA-OR-A5K4-01 17 27419408 27419408 C T MYO18A Missense_Mutation p.E1714K 0.86 deleterious(0.01) probably_damaging(0.95) TCGA-OR-A5K4-01 17 3840801 3840801 C T ATP2A3 Missense_Mutation p.V744M 0.95 deleterious(0) probably_damaging(1) TCGA-OR-A5K4-01 17 38556627 38556627 T A TOP2A Missense_Mutation p.N945I 0.05 deleterious(0.02) possibly_damaging(0.733) TCGA-OR-A5K4-01 17 39018841 39018841 C T KRT12 Missense_Mutation p.A455T 0.94 tolerated(0.35) benign(0.045) TCGA-OR-A5K4-01 17 40574938 40574938 T C PTRF Missense_Mutation p.K60E 0.90 deleterious(0) probably_damaging(0.953) TCGA-OR-A5K4-01 17 42254580 42254580 G A ASB16 Silent p.A348A 0.31 TCGA-OR-A5K4-01 17 47590175 47590175 C T NGFR Missense_Mutation p.A363V 0.46 deleterious(0) probably_damaging(0.966) TCGA-OR-A5K4-01 17 48741343 48741343 G A ABCC3 Silent p.A403A 0.91 TCGA-OR-A5K4-01 17 6329050 6329050 C T AIPL1 Silent p.P295P 0.95 TCGA-OR-A5K4-01 17 6528100 6528100 C T KIAA0753 Missense_Mutation p.R267Q 0.95 tolerated(0.06) possibly_damaging(0.515) TCGA-OR-A5K4-01 17 73484865 73484865 C T KIAA0195 Missense_Mutation p.P213L 0.83 tolerated(0.05) probably_damaging(0.999) TCGA-OR-A5K4-01 17 7574017 7574017 C T TP53 Missense_Mutation p.R337H 0.93 tolerated(0.09) probably_damaging(0.975) TCGA-OR-A5K4-01 17 76570839 76570839 T C DNAH17 Missense_Mutation p.I101V 0.92 benign(0.008) TCGA-OR-A5K4-01 17 79865456 79865456 G A PCYT2 Missense_Mutation p.R171W 0.88 deleterious(0) possibly_damaging(0.827) TCGA-OR-A5K4-01 17 80039618 80039618 C T FASN Missense_Mutation p.A2089T 0.38 tolerated(0.68) benign(0.001) TCGA-OR-A5K4-01 18 18981163 18981163 G A GREB1L Silent p.T195T 0.93 TCGA-OR-A5K4-01 18 21456302 21456302 C T LAMA3 Silent p.T1681T 0.95 TCGA-OR-A5K4-01 18 42531274 42531274 G A SETBP1 Missense_Mutation p.V657M 0.43 tolerated(0.08) probably_damaging(0.998) TCGA-OR-A5K4-01 19 12814290 12814290 C T TNPO2 Missense_Mutation p.V721I 0.93 deleterious(0.01) possibly_damaging(0.87) TCGA-OR-A5K4-01 19 12910730 12910730 C T PRDX2 Missense_Mutation p.V152M 0.90 deleterious(0.03) benign(0.364) TCGA-OR-A5K4-01 19 1393179 1393179 C T NDUFS7 Intron 0.95 TCGA-OR-A5K4-01 19 16045121 16045121 C T CYP4F11 Missense_Mutation p.R33H 0.07 tolerated(0.15) benign(0.009) TCGA-OR-A5K4-01 19 17343368 17343368 G A NR2F6 Silent p.T336T 0.93 TCGA-OR-A5K4-01 19 19313147 19313147 G A NR2C2AP Missense_Mutation p.S99L 0.86 deleterious(0.01) possibly_damaging(0.612) TCGA-OR-A5K4-01 19 2129403 2129403 T C AP3D1 Missense_Mutation p.K216E 0.92 deleterious(0) probably_damaging(0.915) TCGA-OR-A5K4-01 19 34263477 34263477 G A CHST8 Missense_Mutation p.E262K 0.91 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K4-01 19 3734400 3734400 G A TJP3 Missense_Mutation p.R327Q 1.00 tolerated(0.28) benign(0.006) TCGA-OR-A5K4-01 19 38931501 38931501 G A RYR1 Silent p.A54A 0.85 TCGA-OR-A5K4-01 19 41726567 41726567 G A AXL Missense_Mutation p.V38M 0.96 tolerated(0.12) benign(0.163) TCGA-OR-A5K4-01 19 42821906 42821906 G A TMEM145 Missense_Mutation p.G316S 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5K4-01 19 44636010 44636010 C T ZNF225 Missense_Mutation p.R415C 0.88 tolerated(0.06) benign(0.052) TCGA-OR-A5K4-01 19 50549939 50549939 C T ZNF473 Missense_Mutation p.R747C 0.93 deleterious(0) probably_damaging(0.911) TCGA-OR-A5K4-01 19 5143983 5143983 C T KDM4B Silent p.C852C 0.89 TCGA-OR-A5K4-01 19 54669182 54669182 G A TMC4 Missense_Mutation p.R312C 0.52 deleterious(0) probably_damaging(0.944) TCGA-OR-A5K4-01 19 56544918 56544918 G A NLRP5 Missense_Mutation p.A820T 0.91 tolerated(0.14) benign(0.091) TCGA-OR-A5K4-01 19 57036001 57036001 A C ZNF471 Missense_Mutation p.K189Q 0.23 tolerated(0.44) benign(0.001) TCGA-OR-A5K4-01 19 58579725 58579725 C T ZNF135 Missense_Mutation p.R649W 0.93 tolerated(0.07) benign(0.01) TCGA-OR-A5K4-01 19 58982784 58982784 G A ZNF324 Missense_Mutation p.G309S 0.90 deleterious(0) probably_damaging(1) TCGA-OR-A5K4-01 19 6452332 6452332 G A SLC25A23 Silent p.A354A 1.00 TCGA-OR-A5K4-01 1 11728807 11728807 G A FBXO6 Missense_Mutation p.R31H 0.90 tolerated(0.23) benign(0.344) TCGA-OR-A5K4-01 1 152128689 152128689 C T RPTN Missense_Mutation p.G296S 0.86 tolerated(0.08) benign(0.426) TCGA-OR-A5K4-01 1 155238573 155238573 C T CLK2 Missense_Mutation p.R137Q 0.83 tolerated(0.22) benign(0.001) TCGA-OR-A5K4-01 1 155348172 155348172 C T ASH1L Missense_Mutation p.V2078I 0.07 deleterious(0.04) probably_damaging(0.976) TCGA-OR-A5K4-01 1 156882744 156882744 C T PEAR1 Missense_Mutation p.R798C 0.93 deleterious(0) possibly_damaging(0.776) TCGA-OR-A5K4-01 1 15701119 15701119 G A FHAD1 Missense_Mutation p.R403H 0.90 tolerated(0.57) benign(0.001) TCGA-OR-A5K4-01 1 15820441 15820441 G A CASP9 Silent p.D368D 0.90 TCGA-OR-A5K4-01 1 174670265 174670265 C T RABGAP1L Intron 0.85 TCGA-OR-A5K4-01 1 182025773 182025773 G A ZNF648 Missense_Mutation p.A458V 0.20 tolerated(0.07) possibly_damaging(0.791) TCGA-OR-A5K4-01 1 185956660 185956660 C T HMCN1 Missense_Mutation p.S1011F 0.84 possibly_damaging(0.879) TCGA-OR-A5K4-01 1 19479813 19479813 G A UBR4 Missense_Mutation p.R2272C 0.93 probably_damaging(0.965) TCGA-OR-A5K4-01 1 196659281 196659281 C T CFH Silent p.C416C 0.35 TCGA-OR-A5K4-01 1 197060024 197060024 G A ASPM Missense_Mutation p.R3198C 0.30 tolerated(0.16) benign(0.021) TCGA-OR-A5K4-01 1 210856743 210856743 C T KCNH1 Silent p.Q950Q 0.35 TCGA-OR-A5K4-01 1 216373375 216373375 C G USH2A Missense_Mutation p.R1135S 0.95 benign(0.016) TCGA-OR-A5K4-01 1 2235335 2235335 C T SKI Missense_Mutation p.P423L 0.91 tolerated(0.11) probably_damaging(0.999) TCGA-OR-A5K4-01 1 22446583 22446583 C T WNT4 Missense_Mutation p.R339Q 0.92 tolerated(0.36) benign(0.013) TCGA-OR-A5K4-01 1 227198712 227198712 G A CDC42BPA Intron 0.04 TCGA-OR-A5K4-01 1 228503565 228503565 C T OBSCN Missense_Mutation p.R5301W 0.82 probably_damaging(0.985) TCGA-OR-A5K4-01 1 244218382 244218382 C T ZBTB18 Missense_Mutation p.R436C 0.92 deleterious(0) probably_damaging(0.984) TCGA-OR-A5K4-01 1 27121404 27121404 G A PIGV Silent p.P293P 0.93 TCGA-OR-A5K4-01 1 32792571 32792571 G A HDAC1 Silent p.T129T 0.90 TCGA-OR-A5K4-01 1 36437637 36437637 G A AGO3 Missense_Mutation p.V109I 0.90 tolerated(0.21) benign(0.132) TCGA-OR-A5K4-01 1 40872411 40872411 C T SMAP2 Missense_Mutation p.P36L 0.97 deleterious(0) probably_damaging(1) TCGA-OR-A5K4-01 1 94342201 94342201 C T DNTTIP2 Silent p.A430A 0.03 TCGA-OR-A5K4-01 20 13269302 13269302 G A ISM1 Silent p.S253S 0.46 TCGA-OR-A5K4-01 20 17622479 17622479 G A RRBP1 Missense_Mutation p.A283V 0.09 tolerated(0.07) possibly_damaging(0.695) TCGA-OR-A5K4-01 20 18471080 18471080 G A RBBP9 Missense_Mutation p.A98V 0.47 deleterious(0) probably_damaging(0.996) TCGA-OR-A5K4-01 20 23586287 23586287 C T CST9 Missense_Mutation p.R72H 0.42 tolerated(0.24) benign(0.127) TCGA-OR-A5K4-01 20 31481078 31481078 G A EFCAB8 Missense_Mutation p.R286H 0.21 TCGA-OR-A5K4-01 20 3210042 3210042 G A SLC4A11 Missense_Mutation p.A643V 0.22 deleterious(0) benign(0.285) TCGA-OR-A5K4-01 20 33329666 33329666 G A NCOA6 Missense_Mutation p.S1465L 0.52 benign(0) TCGA-OR-A5K4-01 20 3673211 3673211 G T SIGLEC1 Silent p.A1329A 0.40 TCGA-OR-A5K4-01 20 43251246 43251246 C T ADA Silent p.T276T 0.44 TCGA-OR-A5K4-01 20 47242317 47242317 G A PREX1 3'UTR 0.41 TCGA-OR-A5K4-01 20 56186832 56186832 G A ZBP1 Silent p.H275H 0.20 TCGA-OR-A5K4-01 20 57611597 57611597 C T SLMO2 Missense_Mutation p.V132M 0.46 deleterious(0) probably_damaging(0.931) TCGA-OR-A5K4-01 20 58452496 58452496 C T SYCP2 Missense_Mutation p.E1032K 0.43 deleterious(0.01) possibly_damaging(0.906) TCGA-OR-A5K4-01 20 60348149 60348149 G A CDH4 Missense_Mutation p.G163R 0.49 deleterious(0.02) benign(0.046) TCGA-OR-A5K4-01 20 62297419 62297419 G A RTEL1 Missense_Mutation p.G225R 0.46 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K4-01 20 62309673 62309673 C T RTEL1 Silent p.D361D 0.33 TCGA-OR-A5K4-01 20 8609053 8609053 T G PLCB1 Missense_Mutation p.V120G 0.37 deleterious(0) possibly_damaging(0.638) TCGA-OR-A5K4-01 21 31062246 31062246 C T GRIK1 Missense_Mutation p.V116I 0.12 deleterious(0) possibly_damaging(0.689) TCGA-OR-A5K4-01 21 45107797 45107797 G A RRP1B Silent p.P514P 0.90 TCGA-OR-A5K4-01 21 47539706 47539706 G A COL6A2 Missense_Mutation p.R425H 0.06 deleterious(0.02) possibly_damaging(0.579) TCGA-OR-A5K4-01 22 18609364 18609364 G A TUBA8 Missense_Mutation p.E207K 0.87 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-OR-A5K4-01 22 20073745 20073745 A G DGCR8 Missense_Mutation p.I87V 0.14 tolerated_low_confidence(0.68) benign(0) TCGA-OR-A5K4-01 22 24105423 24105423 G A C22orf15 5'UTR 0.95 TCGA-OR-A5K4-01 22 25150089 25150089 C T PIWIL3 Missense_Mutation p.R290Q 0.92 deleterious(0) benign(0.188) TCGA-OR-A5K4-01 22 31971289 31971289 G A SFI1 Missense_Mutation p.R332Q 0.24 tolerated(0.34) benign(0.001) TCGA-OR-A5K4-01 22 38121765 38121765 C T TRIOBP Nonsense_Mutation p.R1068* 0.21 TCGA-OR-A5K4-01 22 50307433 50307433 G A ALG12 5'UTR 0.88 TCGA-OR-A5K4-01 22 50845169 50845169 C T PPP6R2 Silent p.S93S 0.39 TCGA-OR-A5K4-01 2 111921764 111921764 C T BCL2L11 Nonsense_Mutation p.R185* 0.88 TCGA-OR-A5K4-01 2 113885278 113885278 G A IL1RN Missense_Mutation p.R29Q 0.88 tolerated(0.22) benign(0.272) TCGA-OR-A5K4-01 2 133541906 133541906 A T NCKAP5 Silent p.P826P 0.95 TCGA-OR-A5K4-01 2 172951487 172951487 T C DLX1 Missense_Mutation p.L140S 0.91 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K4-01 2 179592882 179592882 T C TTN Missense_Mutation p.N6557D 0.94 TCGA-OR-A5K4-01 2 189948711 189948711 G A COL5A2 Missense_Mutation p.P284L 0.97 benign(0.288) TCGA-OR-A5K4-01 2 191301884 191301884 G A MFSD6 Missense_Mutation p.V377I 0.82 tolerated(0.07) benign(0.432) TCGA-OR-A5K4-01 2 27535925 27535925 C T MPV17 Missense_Mutation p.R41Q 0.88 tolerated(0.13) benign(0.295) TCGA-OR-A5K4-01 2 48026605 48026605 C T MSH6 Nonsense_Mutation p.R495* 0.91 TCGA-OR-A5K4-01 2 70096886 70096886 C T GMCL1 Silent p.F418F 0.94 TCGA-OR-A5K4-01 2 84899458 84899458 G A DNAH6 Silent p.P2154P 0.80 TCGA-OR-A5K4-01 2 98340498 98340498 C T ZAP70 5'UTR 0.09 TCGA-OR-A5K4-01 3 108174589 108174589 G C MYH15 Missense_Mutation p.I772M 0.92 deleterious(0.02) benign(0.22) TCGA-OR-A5K4-01 3 114070578 114070578 C T ZBTB20 Missense_Mutation p.R116H 0.91 deleterious(0) probably_damaging(0.991) TCGA-OR-A5K4-01 3 124854609 124854609 A T SLC12A8 Missense_Mutation p.Y214N 0.91 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K4-01 3 130124438 130124438 C T COL6A5 Nonsense_Mutation p.R1430* 0.88 TCGA-OR-A5K4-01 3 137942520 137942520 G A ARMC8 Missense_Mutation p.R113Q 0.76 deleterious(0.04) probably_damaging(0.998) TCGA-OR-A5K4-01 3 142408558 142408558 T A PLS1 Missense_Mutation p.N360K 0.95 deleterious(0.03) probably_damaging(0.965) TCGA-OR-A5K4-01 3 14724408 14724408 C T C3orf20 Missense_Mutation p.P63L 0.95 tolerated(0.08) possibly_damaging(0.814) TCGA-OR-A5K4-01 3 33216542 33216542 G A SUSD5 Missense_Mutation p.S145L 0.86 deleterious(0.02) benign(0.141) TCGA-OR-A5K4-01 3 36873092 36873092 C T TRANK1 Missense_Mutation p.R2617H 0.90 deleterious(0.02) benign(0.046) TCGA-OR-A5K4-01 3 38080909 38080909 C T DLEC1 Missense_Mutation p.R65C 0.93 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-OR-A5K4-01 3 47453643 47453643 A G PTPN23 Missense_Mutation p.Y1378C 0.90 possibly_damaging(0.818) TCGA-OR-A5K4-01 3 49459642 49459642 C T AMT Silent p.A51A 0.88 TCGA-OR-A5K4-01 3 50211681 50211681 C T SEMA3F Silent p.F118F 0.88 TCGA-OR-A5K4-01 3 52425313 52425313 A G DNAH1 Missense_Mutation p.D3287G 0.92 probably_damaging(0.999) TCGA-OR-A5K4-01 3 52536666 52536666 G A STAB1 Missense_Mutation p.G169E 0.86 deleterious(0) probably_damaging(0.993) TCGA-OR-A5K4-01 3 52553340 52553340 G A STAB1 Missense_Mutation p.G1699S 0.95 deleterious(0) probably_damaging(1) TCGA-OR-A5K4-01 3 52820426 52820426 C T ITIH1 Missense_Mutation p.T570I 0.97 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K4-01 3 64085464 64085464 G A PRICKLE2 Missense_Mutation p.R600W 0.89 deleterious(0) possibly_damaging(0.777) TCGA-OR-A5K4-01 3 66430624 66430624 G A LRIG1 3'UTR 0.81 TCGA-OR-A5K4-01 3 99643213 99643213 G A FILIP1L Nonsense_Mutation p.R156* 0.85 TCGA-OR-A5K4-01 4 109810390 109810390 C T COL25A1 Missense_Mutation p.R321H 0.41 tolerated(0.14) benign(0.132) TCGA-OR-A5K4-01 4 113570694 113570694 C T LARP7 Silent p.S389S 0.09 TCGA-OR-A5K4-01 4 120240719 120240719 C T FABP2 Missense_Mutation p.R107Q 0.38 deleterious(0.02) probably_damaging(0.92) TCGA-OR-A5K4-01 4 1305792 1305792 G A MAEA Missense_Mutation p.R32H 0.46 deleterious(0.01) possibly_damaging(0.775) TCGA-OR-A5K4-01 4 1836604 1836604 C T LETM1 Missense_Mutation p.A282T 0.46 tolerated(0.11) benign(0.089) TCGA-OR-A5K4-01 4 184432152 184432152 C T ING2 3'UTR 0.44 TCGA-OR-A5K4-01 4 185340688 185340688 G A IRF2 Missense_Mutation p.A41V 0.44 deleterious(0) probably_damaging(0.919) TCGA-OR-A5K4-01 4 187629666 187629666 G T FAT1 Missense_Mutation p.T439K 0.52 benign(0.062) TCGA-OR-A5K4-01 4 25419944 25419944 C T ANAPC4 Silent p.A789A 0.41 TCGA-OR-A5K4-01 4 57350950 57350950 G A SRP72 Missense_Mutation p.E336K 0.51 tolerated(0.45) benign(0.047) TCGA-OR-A5K4-01 4 74847662 74847662 G A PF4 Silent p.S3S 0.03 TCGA-OR-A5K4-01 5 1089183 1089183 C T SLC12A7 Missense_Mutation p.V135I 0.49 tolerated(0.05) possibly_damaging(0.866) TCGA-OR-A5K4-01 5 126154661 126154661 T C LMNB1 Silent p.A329A 0.48 TCGA-OR-A5K4-01 5 140581614 140581614 C T PCDHB11 Missense_Mutation p.T756M 0.40 tolerated_low_confidence(0.2) benign(0.026) TCGA-OR-A5K4-01 5 149563262 149563262 C T CDX1 3'UTR 0.50 TCGA-OR-A5K4-01 5 149755751 149755751 G A TCOF1 Missense_Mutation p.R667Q 0.53 tolerated(0.47) benign(0.411) TCGA-OR-A5K4-01 5 153435070 153435070 T C MFAP3 3'UTR 0.39 TCGA-OR-A5K4-01 5 153435079 153435079 A T MFAP3 3'UTR 0.41 TCGA-OR-A5K4-01 5 158595954 158595954 C T RNF145 Missense_Mutation p.V380I 0.44 tolerated(0.13) possibly_damaging(0.564) TCGA-OR-A5K4-01 5 160757958 160757958 G A GABRB2 Missense_Mutation p.R337C 0.43 deleterious(0.05) benign(0.035) TCGA-OR-A5K4-01 5 167674406 167674406 C T TENM2 Silent p.F2154F 0.44 TCGA-OR-A5K4-01 5 176916510 176916510 C T PDLIM7 Silent p.T251T 0.51 TCGA-OR-A5K4-01 5 176951844 176951844 C T FAM193B Silent p.T546T 0.40 TCGA-OR-A5K4-01 5 179193193 179193193 C A MAML1 Silent p.S394S 0.50 TCGA-OR-A5K4-01 5 50090917 50090917 G A PARP8 Missense_Mutation p.R365H 0.47 tolerated_low_confidence(0.11) benign(0.001) TCGA-OR-A5K4-01 5 59899375 59899375 C T DEPDC1B Missense_Mutation p.R362H 0.41 tolerated(0.18) benign(0.001) TCGA-OR-A5K4-01 5 65000123 65000123 T G SGTB Silent p.A119A 0.50 TCGA-OR-A5K4-01 5 74325230 74325230 C T GCNT4 Silent p.S211S 0.54 TCGA-OR-A5K4-01 5 80548557 80548557 G A CKMT2 Missense_Mutation p.E66K 0.43 tolerated(1) benign(0.001) TCGA-OR-A5K4-01 5 82937410 82937410 G A HAPLN1 Missense_Mutation p.R324C 0.46 deleterious(0) probably_damaging(0.979) TCGA-OR-A5K4-01 6 107390834 107390834 G A BEND3 Missense_Mutation p.R521W 0.87 deleterious(0) probably_damaging(0.947) TCGA-OR-A5K4-01 6 15501341 15501341 C T JARID2 Missense_Mutation p.R717W 0.92 deleterious(0.01) possibly_damaging(0.804) TCGA-OR-A5K4-01 6 158900783 158900783 C T TULP4 Missense_Mutation p.R343C 0.92 deleterious(0.04) benign(0.011) TCGA-OR-A5K4-01 6 31630341 31630341 G A GPANK1 Missense_Mutation p.P258L 0.86 tolerated(0.3) probably_damaging(0.999) TCGA-OR-A5K4-01 6 31895915 31895915 G A CFB Missense_Mutation p.R77Q 0.12 tolerated(0.26) benign(0.004) TCGA-OR-A5K4-01 6 41165918 41165918 C T TREML2 Missense_Mutation p.R102Q 0.70 deleterious(0.01) possibly_damaging(0.883) TCGA-OR-A5K4-01 6 44222512 44222512 G A SLC35B2 Silent p.Y410Y 0.90 TCGA-OR-A5K4-01 7 102119338 102119338 G A POLR2J 5'UTR 0.91 TCGA-OR-A5K4-01 7 112723562 112723562 C T GPR85 3'UTR 0.88 TCGA-OR-A5K4-01 7 131913155 131913155 G A PLXNA4 Missense_Mutation p.R560W 0.90 deleterious(0.02) probably_damaging(0.928) TCGA-OR-A5K4-01 7 151864452 151864452 G A KMT2C Missense_Mutation p.R3177C 0.96 probably_damaging(0.999) TCGA-OR-A5K4-01 7 4169611 4169611 G A SDK1 Silent p.S1337S 0.94 TCGA-OR-A5K4-01 7 43351432 43351432 G A HECW1 Missense_Mutation p.R33H 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-OR-A5K4-01 7 56149873 56149873 G A PHKG1 Silent p.Y239Y 0.86 TCGA-OR-A5K4-01 7 6042243 6042243 G A PMS2 Silent p.H126H 0.10 TCGA-OR-A5K4-01 7 780485 780485 C T HEATR2 Silent p.G270G 0.78 TCGA-OR-A5K4-01 7 89982177 89982177 C T GTPBP10 Silent p.S27S 0.92 TCGA-OR-A5K4-01 7 94295390 94295390 C T PEG10 3'UTR 0.07 TCGA-OR-A5K4-01 8 105263855 105263855 G A RIMS2 Missense_Mutation p.R1286H 0.43 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-OR-A5K4-01 8 10583913 10583913 C T SOX7 Missense_Mutation p.G220S 0.51 tolerated(0.31) benign(0.003) TCGA-OR-A5K4-01 8 12950218 12950218 C T DLC1 Missense_Mutation p.V1215I 0.49 deleterious(0.01) probably_damaging(0.992) TCGA-OR-A5K4-01 8 144940488 144940488 C T EPPK1 Missense_Mutation p.D2312N 0.08 probably_damaging(0.989) TCGA-OR-A5K4-01 8 144994967 144994967 G A PLEC Nonsense_Mutation p.R3145* 0.52 TCGA-OR-A5K4-01 8 145745151 145745151 G A LRRC14 Silent p.Q14Q 0.54 TCGA-OR-A5K4-01 8 17611345 17611345 T C MTUS1 Missense_Mutation p.N658D 0.04 tolerated(0.08) benign(0.011) TCGA-OR-A5K4-01 8 19221709 19221709 G A SH2D4A Missense_Mutation p.R278H 0.48 tolerated(0.1) benign(0.001) TCGA-OR-A5K4-01 8 23302032 23302032 G A ENTPD4 Missense_Mutation p.A167V 0.53 tolerated(0.2) benign(0.002) TCGA-OR-A5K4-01 8 43218177 43218177 A G AC022616.1 3'Flank 0.61 TCGA-OR-A5K4-01 8 48955657 48955657 C T UBE2V2 Silent p.G27G 0.06 TCGA-OR-A5K4-01 8 64099263 64099263 G A YTHDF3 Missense_Mutation p.A231T 0.53 tolerated(0.32) benign(0.108) TCGA-OR-A5K4-01 8 68939483 68939483 G T PREX2 Missense_Mutation p.K156N 0.47 deleterious(0.05) probably_damaging(0.998) TCGA-OR-A5K4-01 8 8185743 8185743 G A SGK223 Missense_Mutation p.S850L 0.39 probably_damaging(0.978) TCGA-OR-A5K4-01 8 99961683 99961683 C T OSR2 Missense_Mutation p.T168M 0.49 deleterious(0.02) probably_damaging(0.961) TCGA-OR-A5K4-01 9 101258725 101258725 G A GABBR2 Silent p.N234N 0.95 TCGA-OR-A5K4-01 9 127239354 127239354 G A GPR144 Missense_Mutation p.R956H 0.75 tolerated_low_confidence(0.17) benign(0) TCGA-OR-A5K4-01 9 139354235 139354235 G A SEC16A Missense_Mutation p.T1722M 0.88 deleterious(0) probably_damaging(0.961) TCGA-OR-A5K4-01 9 139739046 139739046 C T C9orf172 Silent p.D60D 0.88 TCGA-OR-A5K4-01 9 35609536 35609536 C T TESK1 Missense_Mutation p.R560W 0.91 deleterious_low_confidence(0.03) possibly_damaging(0.756) TCGA-OR-A5K4-01 9 37516027 37516027 C T FBXO10 Missense_Mutation p.R857H 0.91 tolerated(0.48) benign(0.002) TCGA-OR-A5K4-01 9 75774284 75774284 G A ANXA1 Missense_Mutation p.R72Q 0.93 deleterious(0) probably_damaging(0.968) TCGA-OR-A5K4-01 9 86451768 86451768 A G KIF27 3'UTR 0.38 TCGA-OR-A5K4-01 9 90503505 90503505 G A SPATA31E1 Missense_Mutation p.R1368H 0.88 tolerated(0.39) benign(0.002) TCGA-OR-A5K4-01 9 99252343 99252343 G A HABP4 3'UTR 0.85 TCGA-OR-A5K4-01 X 101382400 101382400 G T TCEAL2 Missense_Mutation p.D200Y 0.42 deleterious(0) probably_damaging(0.961) TCGA-OR-A5K4-01 X 103358761 103358761 G A ZCCHC18 5'UTR 0.60 TCGA-OR-A5K4-01 X 106797696 106797696 C T FRMPD3 Missense_Mutation p.R275C 0.41 deleterious(0) probably_damaging(0.942) TCGA-OR-A5K4-01 X 107812000 107812000 C T COL4A5 Silent p.G111G 0.50 TCGA-OR-A5K4-01 X 115582608 115582608 T C SLC6A14 Missense_Mutation p.V311A 0.44 deleterious(0) possibly_damaging(0.898) TCGA-OR-A5K4-01 X 118602448 118602448 C T SLC25A5 5'UTR 0.48 TCGA-OR-A5K4-01 X 129190051 129190051 C T BCORL1 Silent p.Y1692Y 0.41 TCGA-OR-A5K4-01 X 135292231 135292231 T G FHL1 3'UTR 0.25 TCGA-OR-A5K4-01 X 148685569 148685569 G A TMEM185A Intron 0.56 TCGA-OR-A5K4-01 X 149639048 149639048 C T MAMLD1 Silent p.P376P 0.45 TCGA-OR-A5K4-01 X 152735950 152735950 G A HAUS7 Silent p.S32S 0.46 TCGA-OR-A5K4-01 X 153588004 153588004 G A FLNA Silent p.S1330S 0.54 TCGA-OR-A5K4-01 X 155255036 155255036 C G WASH6P RNA 0.28 TCGA-OR-A5K4-01 X 155255156 155255156 C G WASH6P RNA 0.26 TCGA-OR-A5K4-01 X 15720909 15720909 C T CA5BP1 RNA 0.43 TCGA-OR-A5K4-01 X 18525233 18525233 T G CDKL5 Missense_Mutation p.I6S 0.47 deleterious_low_confidence(0) benign(0.227) TCGA-OR-A5K4-01 X 3228791 3228791 C T MXRA5 Missense_Mutation p.V2485I 0.57 tolerated(0.78) benign(0.122) TCGA-OR-A5K4-01 X 41333840 41333840 C T NYX Silent p.F378F 0.53 TCGA-OR-A5K4-01 X 47039883 47039883 C T RBM10 Missense_Mutation p.A409V 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-OR-A5K4-01 X 47487872 47487872 T C CFP Intron 0.46 TCGA-OR-A5K4-01 X 48649679 48649679 G A GATA1 Missense_Mutation p.A55T 0.51 tolerated_low_confidence(0.27) probably_damaging(0.959) TCGA-OR-A5K4-01 X 53112257 53112257 C T TSPYL2 Missense_Mutation p.R193W 0.49 deleterious(0) probably_damaging(0.991) TCGA-OR-A5K4-01 X 54951477 54951477 A G TRO Silent p.E487E 0.45 TCGA-OR-A5K4-01 X 68749609 68749609 G A FAM155B Missense_Mutation p.R410H 0.04 tolerated(0.54) benign(0.001) TCGA-OR-A5K4-01 X 69508314 69508314 C T PDZD11 Missense_Mutation p.R46Q 0.03 tolerated(0.07) benign(0.002) TCGA-OR-A5K4-01 X 71493926 71493926 G A RPS4X Intron 0.09 TCGA-OR-A5K5-01 10 129676298 129676298 A G CLRN3 3'UTR 0.47 TCGA-OR-A5K5-01 10 14909858 14909859 TA - HSPA14 Frame_Shift_Del p.Y444* 0.28 TCGA-OR-A5K5-01 10 15103749 15103749 G C OLAH Missense_Mutation p.E117Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-OR-A5K5-01 10 49440201 49440201 G A FRMPD2 Silent p.A375A 0.34 TCGA-OR-A5K5-01 10 61835910 61835910 T A ANK3 Missense_Mutation p.M1577L 0.21 benign(0) TCGA-OR-A5K5-01 11 31349747 31349747 T C DCDC1 Silent p.V27V 0.12 TCGA-OR-A5K5-01 11 32461206 32461206 C A WT1 5'Flank 0.40 TCGA-OR-A5K5-01 11 55371204 55371204 A G OR4C11 Missense_Mutation p.Y216H 0.36 deleterious(0.02) possibly_damaging(0.558) TCGA-OR-A5K5-01 11 57518674 57518674 T A BTBD18 5'UTR 0.10 TCGA-OR-A5K5-01 11 66084195 66084195 C T CD248 Missense_Mutation p.G102S 0.16 deleterious(0) probably_damaging(1) TCGA-OR-A5K5-01 11 73431888 73431888 C T RAB6A Intron 0.31 TCGA-OR-A5K5-01 11 73441848 73441848 T C RAB6A Missense_Mutation p.T31A 0.26 deleterious(0.02) possibly_damaging(0.834) TCGA-OR-A5K5-01 11 93471576 93471576 A C TAF1D Missense_Mutation p.V53G 0.51 deleterious(0) possibly_damaging(0.878) TCGA-OR-A5K5-01 11 94201026 94201026 G A MRE11A Missense_Mutation p.R351C 0.22 deleterious(0.04) benign(0.102) TCGA-OR-A5K5-01 12 18491453 18491453 C T PIK3C2G Silent p.L456L 0.23 TCGA-OR-A5K5-01 12 20864373 20864373 C T SLCO1C1 Missense_Mutation p.P153L 0.33 tolerated(0.36) benign(0.044) TCGA-OR-A5K5-01 12 33529696 33529696 C A SYT10 3'UTR 0.36 TCGA-OR-A5K5-01 12 48134303 48134303 C T RAPGEF3 Intron 0.26 TCGA-OR-A5K5-01 12 51207830 51207830 T C ATF1 Silent p.S122S 0.24 TCGA-OR-A5K5-01 12 55846356 55846356 G A OR6C2 Missense_Mutation p.R120H 0.18 deleterious_low_confidence(0.03) benign(0.39) TCGA-OR-A5K5-01 12 56622965 56622965 G A NABP2 Missense_Mutation p.G202S 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5K5-01 12 63544072 63544072 C A AVPR1A Missense_Mutation p.S182I 0.21 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K5-01 12 7053766 7053766 G T C12orf57 Missense_Mutation p.Q60H 0.26 deleterious(0) possibly_damaging(0.748) TCGA-OR-A5K5-01 13 114529971 114529971 T C GAS6 Missense_Mutation p.Y492C 0.46 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K5-01 14 24568382 24568382 C T PCK2 Silent p.C263C 0.12 TCGA-OR-A5K5-01 14 33684463 33684463 T C NPAS3 Silent p.Y72Y 0.32 TCGA-OR-A5K5-01 14 74763089 74763089 C A ABCD4 Missense_Mutation p.K163N 0.31 tolerated(0.11) benign(0.03) TCGA-OR-A5K5-01 15 60797800 60797800 C T RORA Silent p.S316S 0.30 TCGA-OR-A5K5-01 15 65703500 65703500 C A IGDCC4 Silent p.L93L 0.32 TCGA-OR-A5K5-01 15 85438269 85438269 C T SLC28A1 Missense_Mutation p.R126C 0.25 deleterious(0.03) benign(0.306) TCGA-OR-A5K5-01 16 30016788 30016788 A G INO80E 3'UTR 0.21 TCGA-OR-A5K5-01 17 18062646 18062646 A G MYO15A Missense_Mutation p.T3072A 0.40 unknown(0) TCGA-OR-A5K5-01 17 37070576 37070576 A C LASP1 Splice_Site p.X120_splice 0.23 TCGA-OR-A5K5-01 17 41477602 41477602 T C ARL4D Missense_Mutation p.C168R 0.35 deleterious(0.01) probably_damaging(0.959) TCGA-OR-A5K5-01 17 43247039 43247039 G A HEXIM2 Missense_Mutation p.G242S 0.05 tolerated(0.53) benign(0.018) TCGA-OR-A5K5-01 17 44249233 44249233 T C KANSL1 Missense_Mutation p.K93E 0.26 deleterious(0) benign(0.086) TCGA-OR-A5K5-01 17 74004100 74004100 G A EVPL Missense_Mutation p.S1729L 0.26 tolerated(0.42) benign(0.004) TCGA-OR-A5K5-01 17 74625598 74625598 C T ST6GALNAC1 Silent p.P109P 0.22 TCGA-OR-A5K5-01 17 74625786 74625786 G T ST6GALNAC1 Missense_Mutation p.R47S 0.15 benign(0.001) TCGA-OR-A5K5-01 17 9143050 9143050 G C NTN1 Missense_Mutation p.R527P 0.49 tolerated(0.29) benign(0.083) TCGA-OR-A5K5-01 18 48434497 48434498 - AGAG ME2 Frame_Shift_Ins p.T60Rfs*12 0.23 TCGA-OR-A5K5-01 19 11560235 11560235 G T PRKCSH 3'UTR 0.18 TCGA-OR-A5K5-01 19 13246265 13246265 C G NACC1 Missense_Mutation p.L82V 0.14 deleterious(0) probably_damaging(0.988) TCGA-OR-A5K5-01 19 17954268 17954268 T C JAK3 Missense_Mutation p.K114R 0.16 tolerated(0.76) benign(0.005) TCGA-OR-A5K5-01 19 41175846 41175846 G A NUMBL Silent p.A372A 0.20 TCGA-OR-A5K5-01 19 46997223 46997223 G A PNMAL2 Silent p.N500N 0.14 TCGA-OR-A5K5-01 19 48866617 48866617 G C TMEM143 Missense_Mutation p.D65E 0.23 deleterious(0.05) benign(0.417) TCGA-OR-A5K5-01 19 50865552 50865552 G C NAPSA Silent p.V34V 0.21 TCGA-OR-A5K5-01 19 50969580 50969580 C G FAM71E1 3'Flank 0.16 TCGA-OR-A5K5-01 19 52529039 52529039 A G ZNF614 5'UTR 0.18 TCGA-OR-A5K5-01 19 52620097 52620098 TT - ZNF616 Frame_Shift_Del p.N107* 0.16 TCGA-OR-A5K5-01 19 8555234 8555236 CAT - PRAM1 In_Frame_Del p.D654del 0.20 TCGA-OR-A5K5-01 1 107691233 107691233 C A NTNG1 Missense_Mutation p.F6L 0.47 tolerated_low_confidence(0.85) benign(0.004) TCGA-OR-A5K5-01 1 11574461 11574461 T C PTCHD2 Missense_Mutation p.L444P 0.43 deleterious(0) probably_damaging(0.992) TCGA-OR-A5K5-01 1 150532560 150532560 C T ADAMTSL4 Missense_Mutation p.P1038L 0.18 tolerated(0.05) probably_damaging(0.984) TCGA-OR-A5K5-01 1 158632609 158632609 C G SPTA1 Missense_Mutation p.A783P 0.21 tolerated(0.1) possibly_damaging(0.702) TCGA-OR-A5K5-01 1 161722196 161722196 C T DUSP12 Missense_Mutation p.P206S 0.43 deleterious(0.01) probably_damaging(1) TCGA-OR-A5K5-01 1 19455563 19455563 T A UBR4 Missense_Mutation p.H2971L 0.34 probably_damaging(0.98) TCGA-OR-A5K5-01 1 202122941 202122941 G T PTPN7 Missense_Mutation p.T315K 0.13 tolerated(0.47) benign(0.308) TCGA-OR-A5K5-01 1 210857405 210857405 T G KCNH1 Missense_Mutation p.I730L 0.21 tolerated(0.13) benign(0.007) TCGA-OR-A5K5-01 1 215821063 215821063 G T USH2A Silent p.L4864L 0.18 TCGA-OR-A5K5-01 1 226033476 226033476 A G TMEM63A 3'UTR 0.53 TCGA-OR-A5K5-01 1 228582932 228582932 T C TRIM11 Missense_Mutation p.D294G 0.19 tolerated(0.12) benign(0.06) TCGA-OR-A5K5-01 1 44087760 44087760 C T PTPRF 3'UTR 0.48 TCGA-OR-A5K5-01 1 45980288 45980290 ATC - PRDX1 In_Frame_Del p.D135del 0.31 TCGA-OR-A5K5-01 1 66384376 66384376 T A PDE4B Missense_Mutation p.S47T 0.44 deleterious_low_confidence(0.02) benign(0.079) TCGA-OR-A5K5-01 1 79095482 79095482 T A IFI44L Nonsense_Mutation p.L202* 0.11 TCGA-OR-A5K5-01 1 9118302 9118302 G A SLC2A5 Missense_Mutation p.T14M 0.40 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K5-01 20 3214626 3214626 G A SLC4A11 Silent p.I225I 0.36 TCGA-OR-A5K5-01 20 43057001 43057001 C A HNF4A Missense_Mutation p.H386N 0.40 tolerated(0.16) benign(0.352) TCGA-OR-A5K5-01 21 41539177 41539177 T C DSCAM Missense_Mutation p.I996V 0.26 tolerated(1) benign(0.004) TCGA-OR-A5K5-01 22 18070006 18070006 G C SLC25A18 Missense_Mutation p.E172Q 0.06 tolerated(0.47) benign(0.048) TCGA-OR-A5K5-01 22 18978210 18978210 C G DGCR5 RNA 0.40 TCGA-OR-A5K5-01 22 29445399 29445399 G A ZNRF3 Silent p.P410P 0.11 TCGA-OR-A5K5-01 22 46931799 46931799 G A CELSR1 Silent p.Y423Y 0.09 TCGA-OR-A5K5-01 2 114512866 114512869 ACAC - SLC35F5 Frame_Shift_Del p.C49Yfs*4 0.10 TCGA-OR-A5K5-01 2 118575133 118575133 G T DDX18 Nonsense_Mutation p.E67* 0.19 TCGA-OR-A5K5-01 2 125285031 125285031 C A CNTNAP5 Missense_Mutation p.D548E 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-OR-A5K5-01 2 144245049 144245049 A C ARHGAP15 Missense_Mutation p.K271Q 0.32 deleterious(0) possibly_damaging(0.8) TCGA-OR-A5K5-01 2 153476031 153476031 G A FMNL2 Missense_Mutation p.G546S 0.18 probably_damaging(0.994) TCGA-OR-A5K5-01 2 163241222 163241222 C G KCNH7 Missense_Mutation p.D980H 0.05 tolerated(0.36) benign(0.396) TCGA-OR-A5K5-01 2 182322328 182322328 G T ITGA4 5'UTR 0.21 TCGA-OR-A5K5-01 2 202137439 202137440 TG - CASP8 Frame_Shift_Del p.A224Pfs*14 0.08 TCGA-OR-A5K5-01 2 204143326 204143326 A G CYP20A1 Missense_Mutation p.N237S 0.18 tolerated(0.32) benign(0.002) TCGA-OR-A5K5-01 2 215279234 215279234 G T VWC2L Missense_Mutation p.C106F 0.29 deleterious(0) probably_damaging(0.989) TCGA-OR-A5K5-01 2 219508012 219508012 G A ZNF142 Missense_Mutation p.S1076F 0.21 deleterious(0.03) possibly_damaging(0.485) TCGA-OR-A5K5-01 2 230656613 230656613 C T TRIP12 Missense_Mutation p.A1387T 0.49 tolerated(0.17) possibly_damaging(0.714) TCGA-OR-A5K5-01 2 232393591 232393591 C A NMUR1 Silent p.L47L 0.11 TCGA-OR-A5K5-01 2 24522788 24522788 T C ITSN2 Missense_Mutation p.E445G 0.28 deleterious(0.01) unknown(0) TCGA-OR-A5K5-01 2 26684681 26684683 TCT - OTOF In_Frame_Del p.K1805del 0.22 TCGA-OR-A5K5-01 2 36739479 36739479 G T CRIM1 Missense_Mutation p.K574N 0.28 deleterious(0) probably_damaging(0.994) TCGA-OR-A5K5-01 2 74701812 74701812 C G CCDC142 Missense_Mutation p.S698T 0.16 tolerated(0.12) benign(0.121) TCGA-OR-A5K5-01 3 113697118 113697120 TCT - KIAA1407 In_Frame_Del p.K840del 0.18 TCGA-OR-A5K5-01 3 125257453 125257453 G A OSBPL11 Silent p.N622N 0.06 TCGA-OR-A5K5-01 3 129290586 129290586 T C PLXND1 Missense_Mutation p.N1060S 0.19 tolerated(0.43) benign(0.026) TCGA-OR-A5K5-01 3 129370603 129370603 C G TMCC1 Missense_Mutation p.K561N 0.20 deleterious(0) probably_damaging(0.968) TCGA-OR-A5K5-01 3 133896850 133896850 T C RYK Missense_Mutation p.M415V 0.53 tolerated(0.24) benign(0.076) TCGA-OR-A5K5-01 3 139077931 139077931 A T COPB2 Missense_Mutation p.F798Y 0.19 deleterious(0) possibly_damaging(0.899) TCGA-OR-A5K5-01 3 141162487 141162487 A T ZBTB38 Silent p.G419G 0.27 TCGA-OR-A5K5-01 3 182733294 182733294 G A MCCC1 Nonsense_Mutation p.Q704* 0.17 TCGA-OR-A5K5-01 3 183035998 183035999 - C MCF2L2 Frame_Shift_Ins p.E204Gfs*50 0.15 TCGA-OR-A5K5-01 3 37396592 37396592 A C GOLGA4 Missense_Mutation p.T2208P 0.16 probably_damaging(0.98) TCGA-OR-A5K5-01 3 41266104 41266104 G T CTNNB1 Missense_Mutation p.G34V 0.33 deleterious(0) probably_damaging(0.998) TCGA-OR-A5K5-01 3 52724834 52724834 T C GNL3 Intron 0.33 TCGA-OR-A5K5-01 4 125592202 125592202 A G ANKRD50 Missense_Mutation p.C744R 0.21 tolerated(0.68) benign(0.001) TCGA-OR-A5K5-01 4 156136911 156136911 C G NPY2R 3'UTR 0.29 TCGA-OR-A5K5-01 4 164246351 164246351 A G NPY1R 3'UTR 0.75 TCGA-OR-A5K5-01 4 36130245 36130245 C G ARAP2 Missense_Mutation p.D1184H 0.34 deleterious(0) probably_damaging(1) TCGA-OR-A5K5-01 4 57180955 57180955 G T KIAA1211 Missense_Mutation p.R429S 0.25 tolerated(0.07) unknown(0) TCGA-OR-A5K5-01 4 62936396 62936396 G A LPHN3 Missense_Mutation p.V1394I 0.44 tolerated(0.25) benign(0.158) TCGA-OR-A5K5-01 4 71510144 71510144 G T ENAM Missense_Mutation p.V1001F 0.24 tolerated(0.07) benign(0.185) TCGA-OR-A5K5-01 5 11082866 11082866 G C CTNND2 Missense_Mutation p.C910W 0.26 deleterious(0.01) probably_damaging(1) TCGA-OR-A5K5-01 5 140215777 140215777 C T PCDHA7 Silent p.Y603Y 0.25 TCGA-OR-A5K5-01 5 140389355 140389355 A G PCDHAC1 Missense_Mutation p.I909V 0.26 deleterious(0.03) benign(0.038) TCGA-OR-A5K5-01 5 159344848 159344848 C T ADRA1B Silent p.I312I 0.21 TCGA-OR-A5K5-01 5 169097591 169097591 G C DOCK2 Missense_Mutation p.E72Q 0.19 tolerated(0.14) benign(0.082) TCGA-OR-A5K5-01 5 31526222 31526222 C A DROSHA Missense_Mutation p.R273I 0.30 deleterious_low_confidence(0) benign(0.193) TCGA-OR-A5K5-01 5 43161463 43161463 G C ZNF131 Missense_Mutation p.E162Q 0.27 deleterious(0.03) benign(0.226) TCGA-OR-A5K5-01 5 50680462 50680462 A C ISL1 Missense_Mutation p.H39P 0.16 deleterious(0.02) benign(0.434) TCGA-OR-A5K5-01 5 9042934 9042934 C G SEMA5A 3'UTR 0.16 TCGA-OR-A5K5-01 6 125404012 125404012 T G RNF217 Missense_Mutation p.F266C 0.26 deleterious_low_confidence(0.01) benign(0.184) TCGA-OR-A5K5-01 6 136582461 136582461 T A BCLAF1 Missense_Mutation p.D900V 0.11 deleterious(0) unknown(0) TCGA-OR-A5K5-01 6 151281517 151281517 A T MTHFD1L Missense_Mutation p.D637V 0.28 deleterious(0) possibly_damaging(0.875) TCGA-OR-A5K5-01 6 155126521 155126522 TG - SCAF8 Frame_Shift_Del p.V295Efs*38 0.20 TCGA-OR-A5K5-01 6 26225400 26225400 G C HIST1H3E Missense_Mutation p.Q6H 0.30 deleterious_low_confidence(0.01) benign(0.01) TCGA-OR-A5K5-01 6 31854777 31854777 G A EHMT2 Silent p.L705L 0.24 TCGA-OR-A5K5-01 6 39867948 39867948 C A DAAM2 Silent p.S925S 0.29 TCGA-OR-A5K5-01 6 4037635 4037635 C T PRPF4B Nonsense_Mutation p.R415* 0.34 TCGA-OR-A5K5-01 6 51774212 51774212 C A PKHD1 Missense_Mutation p.G2184V 0.29 deleterious(0) probably_damaging(1) TCGA-OR-A5K5-01 6 56336987 56336987 G A DST Missense_Mutation p.S4720F 0.31 probably_damaging(0.991) TCGA-OR-A5K5-01 6 86324650 86324650 T C SYNCRIP Missense_Mutation p.K566E 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-OR-A5K5-01 6 89978901 89978901 G C GABRR2 Missense_Mutation p.A114G 0.26 deleterious(0) benign(0.16) TCGA-OR-A5K5-01 7 11485690 11485690 T C THSD7A Missense_Mutation p.H1021R 0.20 tolerated(0.08) benign(0.091) TCGA-OR-A5K5-01 7 121769438 121769438 A G AASS Silent p.L122L 0.26 TCGA-OR-A5K5-01 7 16734601 16734601 G A BZW2 Missense_Mutation p.R265H 0.22 tolerated(0.16) benign(0.201) TCGA-OR-A5K5-01 7 21469550 21469550 C T SP4 Missense_Mutation p.T256I 0.23 deleterious(0.02) benign(0.207) TCGA-OR-A5K5-01 7 23163401 23163401 G A KLHL7 Silent p.T42T 0.19 TCGA-OR-A5K5-01 7 27140320 27140320 G A HOXA2 3'UTR 0.21 TCGA-OR-A5K5-01 7 37960351 37960361 TCCCGGCTACC - EPDR1 5'UTR 0.15 TCGA-OR-A5K5-01 7 47897371 47897371 A G PKD1L1 Silent p.H1474H 0.23 TCGA-OR-A5K5-01 7 48327569 48327569 G A ABCA13 Nonsense_Mutation p.W2950* 0.27 TCGA-OR-A5K5-01 8 108334173 108334173 C T ANGPT1 Silent p.E253E 0.19 TCGA-OR-A5K5-01 8 113323220 113323220 G T CSMD3 Silent p.V2624V 0.24 TCGA-OR-A5K5-01 8 126019726 126019726 C G SQLE Missense_Mutation p.I273M 0.22 tolerated(0.17) benign(0.007) TCGA-OR-A5K5-01 8 144998369 144998369 T A PLEC Nonsense_Mutation p.K2047* 0.37 TCGA-OR-A5K5-01 8 145247210 145247210 A C MROH1 Splice_Site p.X286_splice 0.28 TCGA-OR-A5K5-01 8 2857496 2857496 T C CSMD1 Silent p.Q2729Q 0.16 TCGA-OR-A5K5-01 8 38021296 38021298 TTC - LSM1 In_Frame_Del p.E98del 0.27 TCGA-OR-A5K5-01 9 117169063 117169063 C G DFNB31 Missense_Mutation p.G603A 0.21 tolerated(0.18) benign(0.008) TCGA-OR-A5K5-01 9 117792645 117792645 G A TNC Missense_Mutation p.A1987V 0.26 tolerated(0.39) possibly_damaging(0.816) TCGA-OR-A5K5-01 9 131271255 131271255 C G GLE1 Missense_Mutation p.S67C 0.17 deleterious(0.03) benign(0.013) TCGA-OR-A5K5-01 9 131271329 131271329 A G GLE1 Missense_Mutation p.S92G 0.16 tolerated(0.18) benign(0.028) TCGA-OR-A5K5-01 9 34627865 34627865 C A ARID3C Silent p.G49G 0.54 TCGA-OR-A5K5-01 9 74347358 74347358 T C TMEM2 Missense_Mutation p.N491S 0.27 deleterious(0) possibly_damaging(0.88) TCGA-OR-A5K5-01 9 74674243 74674243 C T C9orf57 Missense_Mutation p.R24K 0.19 tolerated_low_confidence(0.18) benign(0.14) TCGA-OR-A5K5-01 9 86518378 86518378 T G KIF27 Missense_Mutation p.E352A 0.19 deleterious(0.01) benign(0.15) TCGA-OR-A5K5-01 9 96859984 96859984 C T PTPDC1 Missense_Mutation p.S377F 0.29 deleterious(0) probably_damaging(0.995) TCGA-OR-A5K5-01 X 107979446 107979446 G T IRS4 Silent p.L43L 0.22 TCGA-OR-A5K5-01 X 150891372 150891372 G A FATE1 3'UTR 0.21 TCGA-OR-A5K5-01 X 23803871 23803873 CTT - SAT1 In_Frame_Del p.F139del 0.26 TCGA-OR-A5K5-01 X 24593415 24593415 C G PCYT1B Missense_Mutation p.Q243H 0.24 deleterious(0.01) probably_damaging(0.96) TCGA-OR-A5K5-01 X 26212978 26212978 G C MAGEB6 Missense_Mutation p.D339H 0.26 deleterious(0.02) probably_damaging(0.933) TCGA-OR-A5K5-01 X 41587121 41587121 G T GPR82 Missense_Mutation p.C281F 0.18 deleterious(0) probably_damaging(0.993) TCGA-OR-A5K5-01 X 49107729 49107729 C T FOXP3 3'UTR 0.07 TCGA-OR-A5K5-01 X 50213274 50213274 G A DGKK RNA 0.27 TCGA-OR-A5K5-01 X 53410124 53410124 C T SMC1A Silent p.Q1008Q 0.29 TCGA-OR-A5K5-01 X 53591626 53591626 A C HUWE1 Missense_Mutation p.V2313G 0.15 benign(0.004) TCGA-OR-A5K5-01 X 84362926 84362926 C A SATL1 Missense_Mutation p.G350V 0.22 tolerated(0.9) probably_damaging(0.999) TCGA-OR-A5K5-01 X 85950071 85950071 G T DACH2 Missense_Mutation p.A274S 0.25 tolerated(0.52) benign(0.04) TCGA-OR-A5K6-01 10 112350315 112350315 T G SMC3 Missense_Mutation p.V552G 0.42 deleterious(0) probably_damaging(0.953) TCGA-OR-A5K6-01 10 46961891 46961891 A G SYT15 3'Flank 0.14 TCGA-OR-A5K6-01 11 64573212 64573216 GATCT - MEN1 Frame_Shift_Del p.E364Vfs*6 0.74 TCGA-OR-A5K6-01 11 65826803 65826803 C T SF3B2 Silent p.D438D 0.81 TCGA-OR-A5K6-01 12 125279751 125279751 C T SCARB1 Missense_Mutation p.A398T 0.44 tolerated(0.29) benign(0.065) TCGA-OR-A5K6-01 12 132426223 132426223 G A PUS1 Missense_Mutation p.E311K 0.45 tolerated(0.18) benign(0.14) TCGA-OR-A5K6-01 13 38148740 38148740 T G POSTN Missense_Mutation p.E686D 0.62 tolerated_low_confidence(0.14) benign(0.05) TCGA-OR-A5K6-01 14 21544607 21544607 C T ARHGEF40 Nonsense_Mutation p.Q610* 0.43 TCGA-OR-A5K6-01 14 64554134 64554134 A C SYNE2 Intron 0.56 TCGA-OR-A5K6-01 15 42173312 42173312 G C SPTBN5 Missense_Mutation p.P860A 0.46 benign(0.013) TCGA-OR-A5K6-01 16 78133685 78133685 C G WWOX Missense_Mutation p.L4V 0.04 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-OR-A5K6-01 17 56399729 56399729 C T BZRAP1 Silent p.E454E 0.19 TCGA-OR-A5K6-01 17 61787883 61787883 G A STRADA Silent p.L183L 0.25 TCGA-OR-A5K6-01 19 45028106 45028106 G A CEACAM20 RNA 0.43 TCGA-OR-A5K6-01 1 200008804 200008804 G C NR5A2 Missense_Mutation p.R28P 0.10 tolerated_low_confidence(0.37) possibly_damaging(0.453) TCGA-OR-A5K6-01 1 228879456 228879456 C A RHOU Missense_Mutation p.S249Y 0.42 deleterious(0.01) possibly_damaging(0.825) TCGA-OR-A5K6-01 22 22385615 22385615 G T IGLV4-69 Missense_Mutation p.G35V 0.24 deleterious(0) probably_damaging(0.992) TCGA-OR-A5K6-01 22 35734776 35734776 G T TOM1 Missense_Mutation p.G407C 0.09 deleterious(0) probably_damaging(0.964) TCGA-OR-A5K6-01 2 133425989 133425989 C T LYPD1 Silent p.V58V 0.09 TCGA-OR-A5K6-01 2 145187558 145187558 C A ZEB2 Nonsense_Mutation p.E37* 0.11 TCGA-OR-A5K6-01 2 15607887 15607887 T C NBAS Missense_Mutation p.Y640C 0.53 deleterious(0.01) probably_damaging(0.962) TCGA-OR-A5K6-01 2 213872463 213872463 C T IKZF2 Missense_Mutation p.S401N 0.04 tolerated(0.15) benign(0.367) TCGA-OR-A5K6-01 2 242077469 242077469 G T PASK Missense_Mutation p.H259N 0.35 deleterious(0) possibly_damaging(0.72) TCGA-OR-A5K6-01 3 182990684 182990684 T C MCF2L2 Intron 0.46 TCGA-OR-A5K6-01 3 41266117 41266139 TGCCACTACCACAGCTCCTTCTC - CTNNB1 Frame_Shift_Del p.A39Efs*3 0.36 TCGA-OR-A5K6-01 3 48726082 48726082 T C IP6K2 Missense_Mutation p.E302G 0.16 deleterious(0.02) probably_damaging(0.909) TCGA-OR-A5K6-01 4 106161338 106161338 T C TET2 Intron 0.56 TCGA-OR-A5K6-01 4 126371727 126371727 G A FAT4 Missense_Mutation p.D3186N 0.04 probably_damaging(0.999) TCGA-OR-A5K6-01 4 71068537 71068537 G C ODAM Missense_Mutation p.G238A 0.37 deleterious(0.03) benign(0.003) TCGA-OR-A5K6-01 6 26027331 26027331 C G HIST1H4B Missense_Mutation p.L50F 0.09 deleterious(0.02) benign(0.091) TCGA-OR-A5K6-01 6 35207577 35207577 G A SCUBE3 Missense_Mutation p.R293H 0.44 deleterious(0.03) probably_damaging(0.973) TCGA-OR-A5K6-01 7 158534581 158534581 G T ESYT2 Missense_Mutation p.H628N 0.10 tolerated(0.32) benign(0.005) TCGA-OR-A5K6-01 7 99305480 99305480 G C CYP3A7 Silent p.V457V 0.06 TCGA-OR-A5K6-01 7 99305519 99305519 G A CYP3A7 Silent p.G444G 0.06 TCGA-OR-A5K6-01 8 48889391 48889391 T C MCM4 3'UTR 0.05 TCGA-OR-A5K6-01 9 118162667 118162667 G T DEC1 Missense_Mutation p.V15L 0.19 tolerated_low_confidence(0.19) benign(0.001) TCGA-OR-A5K6-01 X 38665613 38665613 T C MID1IP1 3'UTR 0.42 TCGA-OR-A5K6-01 X 39931877 39931877 C G BCOR Missense_Mutation p.D908H 0.04 deleterious(0) probably_damaging(0.941) TCGA-OR-A5K8-01 11 118828977 118828977 A G UPK2 3'UTR 0.86 TCGA-OR-A5K8-01 12 14610191 14610191 A C ATF7IP Missense_Mutation p.E707A 0.53 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5K8-01 16 30976945 30976945 C T SETD1A Silent p.D581D 0.48 TCGA-OR-A5K8-01 16 75269596 75269596 C G BCAR1 Missense_Mutation p.D447H 0.46 deleterious(0.02) possibly_damaging(0.595) TCGA-OR-A5K8-01 17 41926341 41926341 G T CD300LG Intron 1.00 TCGA-OR-A5K8-01 17 43907881 43907881 G A CRHR1 Silent p.V247V 0.89 TCGA-OR-A5K8-01 17 4798460 4798460 G A MINK1 Missense_Mutation p.R1003Q 0.83 deleterious(0.02) benign(0.387) TCGA-OR-A5K8-01 17 76394346 76394346 A G PGS1 Missense_Mutation p.E142G 0.83 deleterious(0.01) benign(0.209) TCGA-OR-A5K8-01 19 10745635 10745674 CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT - SLC44A2 Splice_Site p.X319_splice 0.32 TCGA-OR-A5K8-01 19 15918537 15918537 G A OR10H1 Missense_Mutation p.S104F 0.35 tolerated(1) benign(0.111) TCGA-OR-A5K8-01 19 44777858 44777858 C T ZNF233 Missense_Mutation p.R349W 0.52 deleterious(0) benign(0.01) TCGA-OR-A5K8-01 19 50881858 50881864 TGTGGGG - NR1H2 Frame_Shift_Del p.V185Rfs*33 0.20 TCGA-OR-A5K8-01 19 50881866 50881866 C A NR1H2 Missense_Mutation p.P187Q 0.28 tolerated(0.1) benign(0.012) TCGA-OR-A5K8-01 19 9060456 9060456 G T MUC16 Missense_Mutation p.T8997K 0.38 unknown(0) TCGA-OR-A5K8-01 1 222721210 222721210 C A HHIPL2 Missense_Mutation p.E59D 0.80 tolerated(0.17) benign(0.059) TCGA-OR-A5K8-01 1 230415221 230415221 C G GALNT2 3'UTR 0.81 TCGA-OR-A5K8-01 2 47184029 47184029 G A TTC7A Missense_Mutation p.E134K 0.04 tolerated(0.08) benign(0.341) TCGA-OR-A5K8-01 3 195517745 195517745 A C MUC4 Missense_Mutation p.S236A 0.85 unknown(0) TCGA-OR-A5K8-01 3 3887575 3887575 A T LRRN1 Missense_Mutation p.D417V 0.82 deleterious(0.05) benign(0.123) TCGA-OR-A5K8-01 5 160049541 160049541 C A ATP10B Missense_Mutation p.A558S 0.32 tolerated(0.62) benign(0.129) TCGA-OR-A5K8-01 5 79029401 79029401 G C CMYA5 Missense_Mutation p.D1605H 0.31 benign(0.006) TCGA-OR-A5K8-01 6 110953362 110953362 C G CDK19 Missense_Mutation p.D173H 1.00 deleterious(0) probably_damaging(0.988) TCGA-OR-A5K8-01 6 112455803 112455803 G T LAMA4 Silent p.I1141I 0.78 TCGA-OR-A5K8-01 6 145093104 145093104 G T UTRN Missense_Mutation p.A2853S 0.11 deleterious(0.02) benign(0.409) TCGA-OR-A5K8-01 6 33288624 33288624 G A DAXX Nonsense_Mutation p.Q310* 0.82 TCGA-OR-A5K8-01 6 96658363 96658363 C T FUT9 3'UTR 0.79 TCGA-OR-A5K8-01 7 101821789 101821789 T C CUX1 Missense_Mutation p.V301A 0.15 tolerated(1) unknown(0) TCGA-OR-A5K8-01 7 112424402 112424402 A G TMEM168 Missense_Mutation p.L160P 0.04 deleterious(0) probably_damaging(0.931) TCGA-OR-A5K8-01 7 127251014 127251014 C G PAX4 3'UTR 0.44 TCGA-OR-A5K8-01 7 127251089 127251089 C G PAX4 3'UTR 0.50 TCGA-OR-A5K8-01 7 73008340 73008340 C G MLXIPL Intron 0.08 TCGA-OR-A5K8-01 7 74119504 74119504 G C GTF2I Missense_Mutation p.V199L 0.19 tolerated(0.34) benign(0.001) TCGA-OR-A5K8-01 8 55540356 55540356 T C RP1 Missense_Mutation p.L1305P 0.16 deleterious(0) possibly_damaging(0.794) TCGA-OR-A5K8-01 9 139616774 139616774 G T FAM69B Intron 0.60 TCGA-OR-A5K8-01 9 2077741 2077741 G T SMARCA2 Missense_Mutation p.A717S 0.41 benign(0.364) TCGA-OR-A5K8-01 X 139865766 139865766 T C CDR1 Missense_Mutation p.T256A 0.95 tolerated_low_confidence(0.25) benign(0.388) TCGA-OR-A5K9-01 10 102289594 102289594 C A NDUFB8 Missense_Mutation p.R5S 0.62 tolerated(0.44) benign(0.118) TCGA-OR-A5K9-01 10 11805518 11805518 C G ECHDC3 Missense_Mutation p.P296R 0.38 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K9-01 10 128193343 128193343 G A C10orf90 Silent p.I142I 0.38 TCGA-OR-A5K9-01 10 29581490 29581490 C G LYZL1 Missense_Mutation p.A107G 0.96 deleterious(0) probably_damaging(0.941) TCGA-OR-A5K9-01 10 50714007 50714007 C A ERCC6 Missense_Mutation p.E483D 0.31 tolerated(0.11) benign(0.008) TCGA-OR-A5K9-01 10 50723715 50723715 C A ERCC6-PGBD3 Missense_Mutation p.W950C 0.30 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5K9-01 10 6533734 6533734 A T PRKCQ Missense_Mutation p.F234Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-OR-A5K9-01 10 75008057 75008057 G A DNAJC9 5'UTR 0.76 TCGA-OR-A5K9-01 11 113103921 113103921 C G NCAM1 Silent p.A574A 0.43 TCGA-OR-A5K9-01 11 121986666 121986666 A T BLID 5'UTR 0.44 TCGA-OR-A5K9-01 11 12315183 12315183 G C MICALCL Missense_Mutation p.A69P 0.49 deleterious(0.04) possibly_damaging(0.776) TCGA-OR-A5K9-01 11 3078632 3078632 G C CARS 5'UTR 0.49 TCGA-OR-A5K9-01 11 3250000 3250000 G A MRGPRE Silent p.H9H 0.92 TCGA-OR-A5K9-01 11 4967624 4967624 A C OR51A4 Missense_Mutation p.L236R 0.46 deleterious(0.01) probably_damaging(0.964) TCGA-OR-A5K9-01 11 57148228 57148228 G A PRG3 5'UTR 0.04 TCGA-OR-A5K9-01 11 85435193 85435193 C G SYTL2 Missense_Mutation p.L769F 0.09 tolerated(0.11) probably_damaging(0.965) TCGA-OR-A5K9-01 12 112600907 112600907 A C HECTD4 Silent p.G4207G 0.28 TCGA-OR-A5K9-01 12 116972579 116972579 A G LINC00173 RNA 0.59 TCGA-OR-A5K9-01 12 2910398 2910398 A G FKBP4 Missense_Mutation p.Y383C 0.60 deleterious(0.03) probably_damaging(1) TCGA-OR-A5K9-01 12 53555170 53555170 C T CSAD Missense_Mutation p.A263T 0.27 tolerated(0.38) benign(0.13) TCGA-OR-A5K9-01 12 54686192 54686192 A G NFE2 Missense_Mutation p.V363A 0.32 deleterious(0.01) benign(0.022) TCGA-OR-A5K9-01 12 56522161 56522161 C G ESYT1 Missense_Mutation p.P20A 0.23 tolerated(0.13) benign(0.066) TCGA-OR-A5K9-01 12 57005765 57005765 G A BAZ2A Silent p.V469V 0.13 TCGA-OR-A5K9-01 12 60165060 60165060 G T SLC16A7 Missense_Mutation p.G93V 0.06 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 13 26138139 26138139 C A ATP8A2 Silent p.P481P 0.38 TCGA-OR-A5K9-01 13 36410236 36410236 T C DCLK1 Missense_Mutation p.E388G 0.37 tolerated(0.16) possibly_damaging(0.607) TCGA-OR-A5K9-01 14 101348688 101348688 A T RTL1 Missense_Mutation p.I813N 0.24 deleterious(0) benign(0.305) TCGA-OR-A5K9-01 14 101349080 101349080 G A RTL1 Silent p.T682T 0.30 TCGA-OR-A5K9-01 14 69704629 69704629 G C EXD2 Missense_Mutation p.A544P 0.27 deleterious(0) probably_damaging(0.998) TCGA-OR-A5K9-01 15 34064256 34064256 A T RYR3 Missense_Mutation p.K2984N 0.91 probably_damaging(0.917) TCGA-OR-A5K9-01 15 34517255 34517255 G T EMC4 5'UTR 0.83 TCGA-OR-A5K9-01 15 89790933 89790933 G A FANCI Missense_Mutation p.E19K 0.38 tolerated(0.81) benign(0.002) TCGA-OR-A5K9-01 15 90176983 90176983 A G KIF7 Silent p.L842L 0.39 TCGA-OR-A5K9-01 16 23847557 23847557 G T PRKCB Missense_Mutation p.A21S 0.38 tolerated(0.2) benign(0.208) TCGA-OR-A5K9-01 16 24268165 24268165 G A CACNG3 Silent p.T30T 0.26 TCGA-OR-A5K9-01 16 31288327 31288327 C T ITGAM Silent p.I390I 0.09 TCGA-OR-A5K9-01 16 4731691 4731691 C T MGRN1 Silent p.S424S 0.62 TCGA-OR-A5K9-01 16 48201459 48201459 C G ABCC11 Missense_Mutation p.R1335P 0.27 deleterious(0) possibly_damaging(0.718) TCGA-OR-A5K9-01 16 76555137 76555137 G C CNTNAP4 Missense_Mutation p.K749N 0.17 deleterious(0) possibly_damaging(0.651) TCGA-OR-A5K9-01 17 10600877 10600877 T C SCO1 5'UTR 0.45 TCGA-OR-A5K9-01 17 39912059 39912059 G T JUP Silent p.P725P 0.10 TCGA-OR-A5K9-01 17 40957779 40957779 C G CNTD1 Missense_Mutation p.L153V 0.63 tolerated(0.23) possibly_damaging(0.882) TCGA-OR-A5K9-01 17 41105767 41105767 T G AARSD1 Missense_Mutation p.I328L 0.10 deleterious(0.02) benign(0.003) TCGA-OR-A5K9-01 17 48614027 48614027 G T EPN3 Missense_Mutation p.S37I 0.86 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 18 346782 346782 G A COLEC12 Silent p.N280N 0.32 TCGA-OR-A5K9-01 19 1046951 1046951 C T ABCA7 Silent p.L591L 0.14 TCGA-OR-A5K9-01 19 11594864 11594864 G A ZNF653 Missense_Mutation p.P555S 0.42 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K9-01 19 15508345 15508345 T G AKAP8L Missense_Mutation p.Q464P 0.08 tolerated(0.76) probably_damaging(0.954) TCGA-OR-A5K9-01 19 15905273 15905273 C T OR10H5 Missense_Mutation p.R139W 0.11 deleterious(0.04) possibly_damaging(0.788) TCGA-OR-A5K9-01 19 18943028 18943028 G C UPF1 Missense_Mutation p.E4Q 0.61 deleterious_low_confidence(0.05) benign(0.192) TCGA-OR-A5K9-01 19 38189550 38189550 T C ZNF607 Missense_Mutation p.I494M 0.26 tolerated(0.18) benign(0.021) TCGA-OR-A5K9-01 19 39819599 39819599 C G GMFG Intron 0.07 TCGA-OR-A5K9-01 19 47673134 47673134 A G SAE1 Silent p.A229A 0.24 TCGA-OR-A5K9-01 19 49538837 49538837 A G CGB1 3'Flank 0.26 TCGA-OR-A5K9-01 19 51022585 51022585 C T LRRC4B Missense_Mutation p.A129T 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5K9-01 19 55739581 55739581 G C TMEM86B Missense_Mutation p.I92M 0.25 deleterious(0) possibly_damaging(0.819) TCGA-OR-A5K9-01 19 57065768 57065768 T C ZFP28 Silent p.C538C 0.13 TCGA-OR-A5K9-01 19 6047473 6047473 G A RFX2 Missense_Mutation p.A12V 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.61) TCGA-OR-A5K9-01 19 6333580 6333580 C T ACER1 5'UTR 0.58 TCGA-OR-A5K9-01 19 8386554 8386554 G C RPS28 Silent p.L18L 0.40 TCGA-OR-A5K9-01 19 9869036 9869036 T C ZNF846 Silent p.S239S 0.29 TCGA-OR-A5K9-01 1 120295286 120295286 C G HMGCS2 Missense_Mutation p.D436H 0.14 tolerated(0.13) possibly_damaging(0.88) TCGA-OR-A5K9-01 1 156303393 156303393 A T CCT3 Silent p.I83I 0.29 TCGA-OR-A5K9-01 1 161954657 161954657 C T OLFML2B Missense_Mutation p.V530I 0.23 deleterious(0.02) possibly_damaging(0.86) TCGA-OR-A5K9-01 1 169672445 169672445 G C SELL Silent p.T314T 0.23 TCGA-OR-A5K9-01 1 1720546 1720546 C A GNB1 Missense_Mutation p.G288W 0.50 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 1 1720547 1720547 A C GNB1 Silent p.A287A 0.50 TCGA-OR-A5K9-01 1 179983496 179983496 G C CEP350 Missense_Mutation p.Q636H 0.22 probably_damaging(0.999) TCGA-OR-A5K9-01 1 186646810 186646810 G A PTGS2 Missense_Mutation p.P204S 0.33 tolerated(0.1) possibly_damaging(0.622) TCGA-OR-A5K9-01 1 198711467 198711467 C A PTPRC Silent p.R890R 0.21 TCGA-OR-A5K9-01 1 209948701 209948701 C A TRAF3IP3 Missense_Mutation p.S261Y 0.26 deleterious(0) benign(0.391) TCGA-OR-A5K9-01 1 212245552 212245552 G A DTL Nonsense_Mutation p.W344* 0.27 TCGA-OR-A5K9-01 1 220219731 220219731 C A EPRS 5'UTR 0.24 TCGA-OR-A5K9-01 1 22973845 22973845 G C C1QC Missense_Mutation p.G103R 0.09 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 1 248437020 248437020 C T OR2T33 Missense_Mutation p.V33I 0.41 deleterious(0.01) benign(0.069) TCGA-OR-A5K9-01 1 34099087 34099087 A G CSMD2 Missense_Mutation p.V1672A 0.42 tolerated(0.36) benign(0.086) TCGA-OR-A5K9-01 1 45227628 45227628 C T KIF2C Missense_Mutation p.T575I 0.41 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 1 47611785 47611785 C A CYP4A22 Missense_Mutation p.Q442K 0.13 tolerated(0.15) benign(0.152) TCGA-OR-A5K9-01 20 33080396 33080396 C G ITCH Missense_Mutation p.L845V 0.34 deleterious(0) probably_damaging(0.998) TCGA-OR-A5K9-01 20 40713387 40713387 G A PTPRT Silent p.V1357V 0.28 TCGA-OR-A5K9-01 21 32253737 32253737 C A KRTAP11-1 Missense_Mutation p.C36F 0.23 tolerated(0.18) probably_damaging(0.973) TCGA-OR-A5K9-01 21 33371313 33371313 C G HUNK Missense_Mutation p.P654R 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5K9-01 21 38997475 38997475 C A KCNJ6 Nonsense_Mutation p.E420* 0.06 TCGA-OR-A5K9-01 21 46047395 46047395 G A KRTAP10-9 Missense_Mutation p.V103I 0.27 tolerated(0.11) unknown(0) TCGA-OR-A5K9-01 22 24236580 24236580 G C MIF 5'UTR 0.46 TCGA-OR-A5K9-01 22 28192787 28192787 C T MN1 Missense_Mutation p.E1249K 0.39 probably_damaging(0.996) TCGA-OR-A5K9-01 22 31137254 31137254 A T OSBP2 Missense_Mutation p.S251C 0.46 deleterious(0) benign(0.145) TCGA-OR-A5K9-01 22 45681905 45681905 C A UPK3A Missense_Mutation p.L46I 0.50 tolerated(0.13) possibly_damaging(0.742) TCGA-OR-A5K9-01 2 10263878 10263878 G A RRM2 Missense_Mutation p.D172N 0.32 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-OR-A5K9-01 2 109380404 109380404 C T RANBP2 Missense_Mutation p.P1137S 0.28 tolerated(0.29) benign(0.072) TCGA-OR-A5K9-01 2 130911319 130911319 C T SMPD4 Missense_Mutation p.E656K 0.24 tolerated(0.08) benign(0.004) TCGA-OR-A5K9-01 2 132241540 132241540 G A MZT2A 3'UTR 0.07 TCGA-OR-A5K9-01 2 132241688 132241688 G A MZT2A Silent p.T141T 0.07 TCGA-OR-A5K9-01 2 157182673 157182673 G C NR4A2 Missense_Mutation p.A510G 0.58 deleterious(0) benign(0.333) TCGA-OR-A5K9-01 2 169745769 169745769 G T SPC25 Silent p.R56R 0.33 TCGA-OR-A5K9-01 2 169939955 169939955 G A DHRS9 Missense_Mutation p.V144M 0.32 deleterious(0.02) probably_damaging(0.975) TCGA-OR-A5K9-01 2 1946895 1946895 C T MYT1L Missense_Mutation p.E122K 0.63 tolerated(0.3) unknown(0) TCGA-OR-A5K9-01 2 196740469 196740469 C G DNAH7 Missense_Mutation p.W2072C 0.34 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 2 212589871 212589871 G A ERBB4 Missense_Mutation p.P224L 0.25 deleterious(0.02) benign(0.352) TCGA-OR-A5K9-01 2 85872161 85872161 C T USP39 Silent p.D506D 0.28 TCGA-OR-A5K9-01 3 102171934 102171934 T C ZPLD1 Missense_Mutation p.I109T 0.47 tolerated(0.5) benign(0.037) TCGA-OR-A5K9-01 3 165548281 165548281 A G BCHE Missense_Mutation p.F181L 0.56 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5K9-01 3 179051848 179051848 A G ZNF639 Missense_Mutation p.T366A 0.46 tolerated(0.24) probably_damaging(0.978) TCGA-OR-A5K9-01 3 193174877 193174877 T C ATP13A4 Silent p.T609T 0.48 TCGA-OR-A5K9-01 3 195511379 195511379 C T MUC4 Missense_Mutation p.A2358T 0.34 unknown(0) TCGA-OR-A5K9-01 3 38043315 38043315 C A VILL Missense_Mutation p.F481L 0.38 tolerated(0.38) benign(0.433) TCGA-OR-A5K9-01 3 41266132 41266155 TCCTTCTCTGAGTGGTAAAGGCAA - CTNNB1 In_Frame_Del p.S45_P52del 0.31 TCGA-OR-A5K9-01 3 47139519 47139519 C G SETD2 Missense_Mutation p.G1690R 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 3 73437153 73437153 T C PDZRN3 Missense_Mutation p.N495S 0.33 tolerated(0.14) benign(0.013) TCGA-OR-A5K9-01 4 126240715 126240715 G T FAT4 Missense_Mutation p.G1050V 0.03 probably_damaging(1) TCGA-OR-A5K9-01 4 126241103 126241103 C T FAT4 Silent p.V1179V 0.25 TCGA-OR-A5K9-01 4 69817434 69817434 G C UGT2A3 Silent p.L15L 0.34 TCGA-OR-A5K9-01 4 69817435 69817435 A T UGT2A3 Missense_Mutation p.L15H 0.34 deleterious(0) probably_damaging(0.968) TCGA-OR-A5K9-01 5 138714364 138714364 G A SLC23A1 Silent p.F365F 0.10 TCGA-OR-A5K9-01 5 149360104 149360104 G C SLC26A2 Missense_Mutation p.L316F 0.42 deleterious(0.01) possibly_damaging(0.857) TCGA-OR-A5K9-01 5 38464097 38464097 G A EGFLAM 3'UTR 0.16 TCGA-OR-A5K9-01 5 40959605 40959605 G A C7 Missense_Mutation p.G515E 0.17 tolerated(0.07) possibly_damaging(0.85) TCGA-OR-A5K9-01 5 89986640 89986640 G T GPR98 Nonsense_Mutation p.E2245* 0.31 TCGA-OR-A5K9-01 6 111693904 111693904 G - REV3L Frame_Shift_Del p.P1885Qfs*45 0.32 TCGA-OR-A5K9-01 6 119252669 119252669 G C MCM9 Missense_Mutation p.R74G 0.62 deleterious(0.02) benign(0.091) TCGA-OR-A5K9-01 6 138531144 138531144 C T KIAA1244 Missense_Mutation p.S106L 0.33 deleterious(0.02) benign(0.002) TCGA-OR-A5K9-01 6 168442715 168442715 G A KIF25 Missense_Mutation p.R238H 0.31 tolerated(0.1) benign(0.038) TCGA-OR-A5K9-01 6 25966696 25966696 C G TRIM38 5'UTR 0.27 TCGA-OR-A5K9-01 6 27777856 27777856 C G HIST1H3H Missense_Mutation p.A2G 0.23 deleterious_low_confidence(0.01) benign(0) TCGA-OR-A5K9-01 6 30557635 30557635 C T ABCF1 Missense_Mutation p.T706M 0.30 deleterious(0) probably_damaging(0.987) TCGA-OR-A5K9-01 6 30652252 30652252 A G PPP1R18 Missense_Mutation p.L515P 0.06 deleterious(0) probably_damaging(0.999) TCGA-OR-A5K9-01 6 32023746 32023746 C A TNXB Missense_Mutation p.R2783S 0.30 benign(0.009) TCGA-OR-A5K9-01 6 32166298 32166298 C A NOTCH4 Missense_Mutation p.W1552C 0.22 deleterious(0.03) benign(0.091) TCGA-OR-A5K9-01 6 33255388 33255388 G A WDR46 Intron 0.33 TCGA-OR-A5K9-01 6 33385930 33385930 G A CUTA Silent p.G11G 0.09 TCGA-OR-A5K9-01 6 33385931 33385931 C G CUTA Missense_Mutation p.G11A 0.08 deleterious_low_confidence(0.04) unknown(0) TCGA-OR-A5K9-01 6 35388052 35388052 G T PPARD Silent p.G93G 0.45 TCGA-OR-A5K9-01 6 41002645 41002645 T G UNC5CL Missense_Mutation p.T57P 0.24 tolerated(0.08) benign(0.093) TCGA-OR-A5K9-01 6 51524734 51524734 T A PKHD1 Missense_Mutation p.Q3397L 0.35 deleterious(0.02) benign(0.013) TCGA-OR-A5K9-01 6 73935131 73935131 T C KHDC1L Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) possibly_damaging(0.455) TCGA-OR-A5K9-01 7 103243773 103243773 C G RELN Missense_Mutation p.G1104A 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5K9-01 7 138601908 138601908 C - KIAA1549 Frame_Shift_Del p.V822Cfs*17 0.16 TCGA-OR-A5K9-01 7 150698991 150698991 G T NOS3 Missense_Mutation p.G529C 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 7 150771214 150771214 G C SLC4A2 Missense_Mutation p.R875T 0.29 tolerated(0.63) benign(0.004) TCGA-OR-A5K9-01 7 20782576 20782576 G A ABCB5 Missense_Mutation p.R1034H 0.38 tolerated(0.05) benign(0.005) TCGA-OR-A5K9-01 7 34698162 34698162 C G NPSR1 Nonsense_Mutation p.Y46* 0.28 TCGA-OR-A5K9-01 7 44150789 44150789 C A AEBP1 Missense_Mutation p.A556D 0.07 deleterious(0.02) benign(0.093) TCGA-OR-A5K9-01 7 99032679 99032679 T A ATP5J2-PTCD1 Missense_Mutation p.T112S 0.30 tolerated(0.5) benign(0.006) TCGA-OR-A5K9-01 8 10465856 10465856 C T RP1L1 Missense_Mutation p.E1918K 0.19 unknown(0) TCGA-OR-A5K9-01 8 108970363 108970363 A G RSPO2 Silent p.C187C 0.21 TCGA-OR-A5K9-01 8 145736053 145736053 C A MFSD3 Silent p.V301V 0.06 TCGA-OR-A5K9-01 8 21845361 21845361 G A XPO7 Missense_Mutation p.G594R 0.21 tolerated(1) benign(0.002) TCGA-OR-A5K9-01 8 23305367 23305367 T C ENTPD4 Missense_Mutation p.T80A 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5K9-01 8 25287346 25287346 T C KCTD9 3'UTR 0.25 TCGA-OR-A5K9-01 8 29035052 29035052 G A KIF13B Missense_Mutation p.A255V 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 8 3072036 3072036 A C CSMD1 Missense_Mutation p.V1617G 0.04 benign(0.06) TCGA-OR-A5K9-01 8 53569634 53569634 C A RB1CC1 Nonsense_Mutation p.E919* 0.14 TCGA-OR-A5K9-01 9 101589096 101589096 G A GALNT12 Missense_Mutation p.A202T 0.29 tolerated(0.55) possibly_damaging(0.684) TCGA-OR-A5K9-01 9 104449164 104449164 C T GRIN3A Missense_Mutation p.E340K 0.22 tolerated(0.08) benign(0.022) TCGA-OR-A5K9-01 9 135753538 135753538 C G C9orf9 5'Flank 0.30 TCGA-OR-A5K9-01 9 136379902 136379902 C T TMEM8C Nonsense_Mutation p.W174* 0.31 TCGA-OR-A5K9-01 9 67793702 67793702 C A FAM27B Intron 0.07 TCGA-OR-A5K9-01 9 89771511 89771511 G T C9orf170 Silent p.L64L 0.18 TCGA-OR-A5K9-01 X 100229150 100229150 T C ARL13A Missense_Mutation p.S32P 0.07 deleterious(0) probably_damaging(0.966) TCGA-OR-A5K9-01 X 101139313 101139313 C T ZMAT1 Silent p.Q362Q 0.13 TCGA-OR-A5K9-01 X 102632868 102632868 A G NGFRAP1 3'UTR 0.50 TCGA-OR-A5K9-01 X 110439738 110439738 C T PAK3 Missense_Mutation p.P462L 0.39 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 X 117532433 117532433 C A WDR44 Missense_Mutation p.T425K 0.38 tolerated(0.08) benign(0.442) TCGA-OR-A5K9-01 X 12734821 12734821 C T FRMPD4 Missense_Mutation p.A748V 0.53 tolerated_low_confidence(0.14) benign(0.021) TCGA-OR-A5K9-01 X 153647890 153647890 G A TAZ Missense_Mutation p.V157I 0.40 deleterious(0) possibly_damaging(0.474) TCGA-OR-A5K9-01 X 31196848 31196848 C T DMD Silent p.A3387A 0.43 TCGA-OR-A5K9-01 X 48935337 48935337 C T WDR45 Missense_Mutation p.G67D 0.54 deleterious(0) probably_damaging(0.965) TCGA-OR-A5K9-01 X 49021301 49021301 A T MAGIX Missense_Mutation p.E127V 0.43 deleterious(0) probably_damaging(1) TCGA-OR-A5K9-01 X 5821337 5821337 G A NLGN4X Missense_Mutation p.A461V 0.48 deleterious(0) probably_damaging(0.99) TCGA-OR-A5K9-01 X 7023778 7023778 A C HDHD1 Missense_Mutation p.L78V 0.14 tolerated(0.46) benign(0.063) TCGA-OR-A5K9-01 X 8763192 8763192 C A FAM9A Missense_Mutation p.G253V 0.61 tolerated_low_confidence(0.08) unknown(0) TCGA-OR-A5KB-01 10 100143584 100143584 C G PYROXD2 Missense_Mutation p.V573L 0.39 tolerated(0.12) benign(0.006) TCGA-OR-A5KB-01 10 100159880 100159880 C A PYROXD2 Missense_Mutation p.Q150H 0.38 deleterious(0) benign(0.289) TCGA-OR-A5KB-01 10 101995432 101995432 C T CWF19L1 Silent p.Q488Q 0.26 TCGA-OR-A5KB-01 10 102509533 102509534 - A PAX2 Frame_Shift_Ins p.V26Gfs*28 0.22 TCGA-OR-A5KB-01 10 102568924 102568924 C T PAX2 Silent p.L307L 0.41 TCGA-OR-A5KB-01 10 102738036 102738036 G T MRPL43 3'Flank 0.26 TCGA-OR-A5KB-01 10 104597171 104597171 G T CYP17A1 5'UTR 0.17 TCGA-OR-A5KB-01 10 105236155 105236155 G T CALHM3 Missense_Mutation p.Q147K 0.33 deleterious(0.04) benign(0.037) TCGA-OR-A5KB-01 10 105953581 105953581 C T WDR96 Intron 0.37 TCGA-OR-A5KB-01 10 106401534 106401534 C T SORCS3 Missense_Mutation p.P150L 0.12 tolerated(0.39) benign(0.001) TCGA-OR-A5KB-01 10 106737189 106737189 C A SORCS3 Missense_Mutation p.Q298K 0.18 tolerated(0.18) benign(0.219) TCGA-OR-A5KB-01 10 106970974 106970974 T A SORCS3 Missense_Mutation p.C781S 0.27 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 10 108338952 108338952 C A SORCS1 Missense_Mutation p.M1143I 0.23 deleterious(0) benign(0.209) TCGA-OR-A5KB-01 10 108448031 108448031 G C SORCS1 Missense_Mutation p.I493M 0.14 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 108589374 108589374 G T SORCS1 Silent p.T228T 0.10 TCGA-OR-A5KB-01 10 108923768 108923768 G A SORCS1 Missense_Mutation p.H173Y 0.07 deleterious(0) possibly_damaging(0.907) TCGA-OR-A5KB-01 10 112572474 112572474 G T RBM20 Missense_Mutation p.K773N 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-OR-A5KB-01 10 112838012 112838012 C T ADRA2A Silent p.F86F 0.34 TCGA-OR-A5KB-01 10 112838129 112838129 G T ADRA2A Silent p.L125L 0.26 TCGA-OR-A5KB-01 10 115991246 115991247 AA G TDRD1 Frame_Shift_Del p.T1181Qfs*17 0.26 TCGA-OR-A5KB-01 10 116201527 116201527 G A ABLIM1 Missense_Mutation p.S651F 0.24 deleterious(0.01) benign(0.392) TCGA-OR-A5KB-01 10 116444073 116444073 G A ABLIM1 Missense_Mutation p.H14Y 0.22 tolerated_low_confidence(0.24) benign(0.058) TCGA-OR-A5KB-01 10 118030372 118030372 C A GFRA1 Missense_Mutation p.C99F 0.24 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 118306857 118306857 G T PNLIP Missense_Mutation p.W33L 0.13 deleterious(0) probably_damaging(0.965) TCGA-OR-A5KB-01 10 118315585 118315585 T G PNLIP Missense_Mutation p.D295E 0.24 tolerated(0.05) benign(0.007) TCGA-OR-A5KB-01 10 118350667 118350667 T - PNLIPRP1 Frame_Shift_Del p.F10Sfs*33 0.20 TCGA-OR-A5KB-01 10 118383552 118383552 C A PNLIPRP2 Missense_Mutation p.P49H 0.25 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 10 118424447 118424447 C G C10orf82 Missense_Mutation p.V96L 0.14 tolerated(0.42) benign(0.009) TCGA-OR-A5KB-01 10 118425218 118425218 C G C10orf82 Missense_Mutation p.A59P 0.14 tolerated(0.21) possibly_damaging(0.774) TCGA-OR-A5KB-01 10 118893665 118893665 G T VAX1 Missense_Mutation p.R287S 0.27 deleterious(0.02) benign(0.419) TCGA-OR-A5KB-01 10 118896161 118896161 C A VAX1 Missense_Mutation p.G84V 0.23 deleterious(0) unknown(0) TCGA-OR-A5KB-01 10 118897336 118897336 G T VAX1 Missense_Mutation p.L78M 0.39 deleterious(0) unknown(0) TCGA-OR-A5KB-01 10 118969655 118969655 C A KCNK18 Missense_Mutation p.P334T 0.34 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KB-01 10 119003663 119003663 C A SLC18A2 Silent p.T101T 0.18 TCGA-OR-A5KB-01 10 119305183 119305183 G T EMX2 Silent p.A149A 0.37 TCGA-OR-A5KB-01 10 120353662 120353662 G C PRLHR Silent p.T365T 0.16 TCGA-OR-A5KB-01 10 120354576 120354576 C A PRLHR Missense_Mutation p.G61W 0.26 deleterious(0.02) possibly_damaging(0.808) TCGA-OR-A5KB-01 10 12046670 12046670 C A UPF2 Nonsense_Mutation p.E455* 0.45 TCGA-OR-A5KB-01 10 120792137 120792137 G C NANOS1 3'UTR 0.19 TCGA-OR-A5KB-01 10 120921874 120921874 C T SFXN4 Missense_Mutation p.S77N 0.37 tolerated(0.54) benign(0.003) TCGA-OR-A5KB-01 10 121685604 121685604 G T SEC23IP Missense_Mutation p.E726D 0.41 tolerated(0.42) benign(0.003) TCGA-OR-A5KB-01 10 124008228 124008228 C T TACC2 Silent p.A2821A 0.17 TCGA-OR-A5KB-01 10 124402801 124402801 G C DMBT1 Missense_Mutation p.G2377R 0.25 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 124907940 124907940 G T HMX2 Missense_Mutation p.G16C 0.30 tolerated_low_confidence(0.09) benign(0.41) TCGA-OR-A5KB-01 10 124907941 124907941 G T HMX2 Missense_Mutation p.G16V 0.30 tolerated_low_confidence(0.15) benign(0.004) TCGA-OR-A5KB-01 10 124909282 124909282 C A HMX2 Silent p.V155V 0.15 TCGA-OR-A5KB-01 10 125530486 125530486 C A CPXM2 Missense_Mutation p.G350C 0.34 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KB-01 10 125530489 125530489 G T CPXM2 Missense_Mutation p.Q349K 0.33 tolerated(0.38) benign(0.076) TCGA-OR-A5KB-01 10 125639753 125639753 C A CPXM2 Missense_Mutation p.R126L 0.15 tolerated(0.31) benign(0) TCGA-OR-A5KB-01 10 125639754 125639754 G C CPXM2 Missense_Mutation p.R126G 0.15 tolerated(0.37) benign(0.011) TCGA-OR-A5KB-01 10 127806696 127806696 C A ADAM12 Missense_Mutation p.V175F 0.23 tolerated(0.24) benign(0.002) TCGA-OR-A5KB-01 10 128147643 128147643 G T C10orf90 Missense_Mutation p.S621R 0.32 tolerated(0.13) benign(0.004) TCGA-OR-A5KB-01 10 128153420 128153420 C G C10orf90 Missense_Mutation p.C460S 0.08 tolerated(0.4) benign(0.209) TCGA-OR-A5KB-01 10 131565118 131565118 G C MGMT Missense_Mutation p.G192R 0.12 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 131638572 131638572 C A EBF3 Missense_Mutation p.V521L 0.16 deleterious_low_confidence(0.02) benign(0.371) TCGA-OR-A5KB-01 10 13275734 13275734 C A UCMA Splice_Site p.X42_splice 0.34 TCGA-OR-A5KB-01 10 133931066 133931066 G T JAKMIP3 Missense_Mutation p.E207D 0.36 tolerated(1) benign(0.002) TCGA-OR-A5KB-01 10 134648207 134648207 C T TTC40 Missense_Mutation p.E2273K 0.27 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 10 134663902 134663902 C T TTC40 Missense_Mutation p.G1933E 0.26 tolerated(1) benign(0.001) TCGA-OR-A5KB-01 10 134664665 134664665 C A TTC40 Missense_Mutation p.A1907S 0.14 tolerated(0.39) benign(0.045) TCGA-OR-A5KB-01 10 135053855 135053855 C A VENTX 3'UTR 0.18 TCGA-OR-A5KB-01 10 135106162 135106162 C A TUBGCP2 Missense_Mutation p.G380V 0.30 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 10 135179540 135179540 C A ECHS1 Nonsense_Mutation p.E227* 0.23 TCGA-OR-A5KB-01 10 135209699 135209699 G T RP11-108K14.8 Missense_Mutation p.Q75H 0.16 tolerated(0.24) benign(0.006) TCGA-OR-A5KB-01 10 16949626 16949626 C T CUBN Missense_Mutation p.S2529N 0.37 tolerated(0.38) benign(0.013) TCGA-OR-A5KB-01 10 16970184 16970184 C G CUBN Missense_Mutation p.R2081S 0.51 tolerated(0.19) benign(0.314) TCGA-OR-A5KB-01 10 17275787 17275787 G C VIM Missense_Mutation p.A247P 0.38 deleterious(0.05) benign(0.22) TCGA-OR-A5KB-01 10 17636354 17636354 C T PTPLA Missense_Mutation p.V212I 0.29 tolerated(0.36) benign(0.041) TCGA-OR-A5KB-01 10 17756780 17756780 G T STAM 3'UTR 0.42 TCGA-OR-A5KB-01 10 18138668 18138668 C G MRC1 Missense_Mutation p.D408E 0.76 deleterious(0.03) benign(0.084) TCGA-OR-A5KB-01 10 18155632 18155632 C A MRC1 Missense_Mutation p.P642H 0.33 deleterious(0) probably_damaging(0.987) TCGA-OR-A5KB-01 10 18254445 18254445 G T SLC39A12 Nonsense_Mutation p.G193* 0.24 TCGA-OR-A5KB-01 10 23408289 23408289 G A MSRB2 Missense_Mutation p.G118D 0.35 deleterious(0.04) possibly_damaging(0.875) TCGA-OR-A5KB-01 10 25701255 25701255 G T GPR158 Missense_Mutation p.R396S 0.36 tolerated(0.09) benign(0.009) TCGA-OR-A5KB-01 10 25839904 25839904 G T GPR158 Splice_Site p.X469_splice 0.32 TCGA-OR-A5KB-01 10 25861668 25861668 G A GPR158 Silent p.L535L 0.30 TCGA-OR-A5KB-01 10 25861669 25861669 G T GPR158 Missense_Mutation p.V536L 0.30 tolerated(0.42) benign(0.029) TCGA-OR-A5KB-01 10 25885596 25885596 C G GPR158 Missense_Mutation p.R675G 0.33 deleterious(0) possibly_damaging(0.612) TCGA-OR-A5KB-01 10 25887095 25887095 C A GPR158 Missense_Mutation p.S847Y 0.31 deleterious(0) probably_damaging(0.927) TCGA-OR-A5KB-01 10 26241039 26241039 G T MYO3A 5'UTR 0.32 TCGA-OR-A5KB-01 10 26459432 26459432 A T MYO3A Missense_Mutation p.Q1121L 0.25 deleterious(0.04) benign(0.002) TCGA-OR-A5KB-01 10 26500920 26500920 G C MYO3A 3'UTR 0.43 TCGA-OR-A5KB-01 10 26589960 26589960 A G GAD2 3'UTR 0.40 TCGA-OR-A5KB-01 10 27443163 27443163 C A YME1L1 5'UTR 0.30 TCGA-OR-A5KB-01 10 30986395 30986395 G A SVILP1 RNA 0.45 TCGA-OR-A5KB-01 10 31750115 31750115 G T ZEB1 Missense_Mutation p.G70W 0.36 tolerated(0.08) benign(0.138) TCGA-OR-A5KB-01 10 37422904 37422904 G T ANKRD30A Missense_Mutation p.Q170H 0.43 deleterious(0.01) probably_damaging(0.934) TCGA-OR-A5KB-01 10 37508068 37508068 A G ANKRD30A Missense_Mutation p.N1087S 0.19 deleterious(0.04) possibly_damaging(0.636) TCGA-OR-A5KB-01 10 38305844 38305844 G T ZNF33A Missense_Mutation p.V19L 0.34 deleterious(0.02) possibly_damaging(0.907) TCGA-OR-A5KB-01 10 43609034 43609034 G T RET Missense_Mutation p.G597V 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-OR-A5KB-01 10 43692433 43692433 T A RASGEF1A Missense_Mutation p.S447C 0.42 deleterious(0) possibly_damaging(0.88) TCGA-OR-A5KB-01 10 46322196 46322196 T A AGAP4 Missense_Mutation p.N387Y 0.34 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 10 47087507 47087507 C A NPY4R Missense_Mutation p.Q242K 0.20 tolerated(0.42) benign(0.006) TCGA-OR-A5KB-01 10 49658873 49658873 C G ARHGAP22 Silent p.R449R 0.37 TCGA-OR-A5KB-01 10 49918000 49918000 C A WDFY4 Missense_Mutation p.L75I 0.33 deleterious(0.02) possibly_damaging(0.51) TCGA-OR-A5KB-01 10 49934093 49934093 C G WDFY4 Silent p.L253L 0.18 TCGA-OR-A5KB-01 10 49951243 49951243 G T WDFY4 Missense_Mutation p.R703S 0.38 deleterious(0.01) benign(0.066) TCGA-OR-A5KB-01 10 49968459 49968459 C T WDFY4 Missense_Mutation p.R843W 0.37 tolerated(0.14) benign(0.009) TCGA-OR-A5KB-01 10 5005584 5005584 T G AKR1C1 5'UTR 0.36 TCGA-OR-A5KB-01 10 50098737 50098737 G A WDFY4 Silent p.T2427T 0.34 TCGA-OR-A5KB-01 10 50341914 50341914 C G FAM170B Missense_Mutation p.G17A 0.30 deleterious(0.02) possibly_damaging(0.814) TCGA-OR-A5KB-01 10 50530784 50530784 G T C10orf71 Missense_Mutation p.G65V 0.35 deleterious(0) probably_damaging(0.959) TCGA-OR-A5KB-01 10 50819769 50819769 G T SLC18A3 Missense_Mutation p.G328V 0.30 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 50854688 50854688 G C CHAT Missense_Mutation p.G417R 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 10 51040918 51040918 C A PARG Nonsense_Mutation p.E375* 0.32 TCGA-OR-A5KB-01 10 52067049 52067049 C G SGMS1 Silent p.L365L 0.49 TCGA-OR-A5KB-01 10 52389788 52389788 G T RP11-50E11.3 RNA 0.26 TCGA-OR-A5KB-01 10 5254964 5254964 C A AKR1C4 Missense_Mutation p.P230T 0.37 tolerated(0.51) benign(0.117) TCGA-OR-A5KB-01 10 52573773 52573773 G T A1CF Silent p.G397G 0.34 TCGA-OR-A5KB-01 10 55780118 55780118 T C PCDH15 Missense_Mutation p.K862R 0.19 tolerated(0.51) benign(0.01) TCGA-OR-A5KB-01 10 56106181 56106181 C G PCDH15 Missense_Mutation p.D180H 0.19 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 60562966 60562966 C T BICC1 Silent p.A715A 0.23 TCGA-OR-A5KB-01 10 61029737 61029737 G T FAM13C Missense_Mutation p.S242Y 0.41 tolerated(1) probably_damaging(0.979) TCGA-OR-A5KB-01 10 61112192 61112192 C A FAM13C Silent p.L54L 0.28 TCGA-OR-A5KB-01 10 61815615 61815615 C G ANK3 Missense_Mutation p.G4289A 0.43 benign(0.005) TCGA-OR-A5KB-01 10 6521128 6521128 C A PRKCQ Splice_Site p.X394_splice 0.33 TCGA-OR-A5KB-01 10 68139070 68139070 G T CTNNA3 Silent p.A524A 0.25 TCGA-OR-A5KB-01 10 68139071 68139071 G T CTNNA3 Missense_Mutation p.A524D 0.25 deleterious(0) unknown(0) TCGA-OR-A5KB-01 10 70450767 70450767 A T TET1 Silent p.S1869S 0.25 TCGA-OR-A5KB-01 10 70644278 70644278 G T STOX1 Missense_Mutation p.Q242H 0.41 tolerated(0.18) benign(0.006) TCGA-OR-A5KB-01 10 71168846 71168846 G T TACR2 Intron 0.49 TCGA-OR-A5KB-01 10 71658494 71658494 G T COL13A1 Silent p.P252P 0.14 TCGA-OR-A5KB-01 10 73326680 73326680 C A CDH23 Missense_Mutation p.T204K 0.73 deleterious(0.01) benign(0.216) TCGA-OR-A5KB-01 10 73405591 73405591 C A CDH23 Missense_Mutation p.L382M 0.41 tolerated(0.09) possibly_damaging(0.735) TCGA-OR-A5KB-01 10 73447457 73447457 G T CDH23 Silent p.V272V 0.23 TCGA-OR-A5KB-01 10 73766985 73766985 G T CHST3 Missense_Mutation p.D66Y 0.37 tolerated_low_confidence(0.31) possibly_damaging(0.756) TCGA-OR-A5KB-01 10 75239173 75239173 C A PPP3CB Missense_Mutation p.G63V 0.25 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 10 7621911 7621911 G C ITIH5 Missense_Mutation p.P409A 0.36 tolerated(0.26) benign(0.149) TCGA-OR-A5KB-01 10 7659227 7659227 G - ITIH5 Frame_Shift_Del p.P224Hfs*14 0.34 TCGA-OR-A5KB-01 10 76861715 76861715 T A DUSP13 Intron 0.18 TCGA-OR-A5KB-01 10 7763735 7763735 C A ITIH2 Missense_Mutation p.L288M 0.34 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 10 7841035 7841035 G C ATP5C1 Silent p.L102L 0.28 TCGA-OR-A5KB-01 10 78734275 78734275 T A KCNMA1 Intron 0.10 TCGA-OR-A5KB-01 10 79814544 79814544 G T RPS24 Missense_Mutation p.V216F 0.41 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5KB-01 10 81273759 81273759 A G EIF5AL1 3'UTR 0.38 TCGA-OR-A5KB-01 10 85961590 85961590 C A CDHR1 Missense_Mutation p.R185S 0.50 tolerated(0.29) benign(0.342) TCGA-OR-A5KB-01 10 88649911 88649911 G C BMPR1A Missense_Mutation p.D54H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5KB-01 10 91177055 91177055 G A IFIT5 Silent p.E33E 0.33 TCGA-OR-A5KB-01 10 94239048 94239048 T C IDE Missense_Mutation p.I624V 0.32 tolerated(0.31) benign(0) TCGA-OR-A5KB-01 10 95720969 95720969 A T PIPSL RNA 0.15 TCGA-OR-A5KB-01 10 96829242 96829242 C A CYP2C8 5'UTR 0.22 TCGA-OR-A5KB-01 10 97386505 97386505 C A ALDH18A1 Missense_Mutation p.M369I 0.20 tolerated(0.46) benign(0.137) TCGA-OR-A5KB-01 10 97923325 97923325 A G ZNF518A RNA 0.28 TCGA-OR-A5KB-01 10 98355338 98355338 C G PIK3AP1 Missense_Mutation p.R805P 0.21 deleterious(0) unknown(0) TCGA-OR-A5KB-01 10 98766287 98766287 G T SLIT1 Missense_Mutation p.Q1178K 0.39 tolerated(0.09) benign(0.345) TCGA-OR-A5KB-01 10 99080156 99080156 G T FRAT1 3'UTR 0.34 TCGA-OR-A5KB-01 11 10328160 10328160 C A ADM Missense_Mutation p.P177Q 0.56 tolerated_low_confidence(0.34) unknown(0) TCGA-OR-A5KB-01 11 103818443 103818443 G A PDGFD Nonsense_Mutation p.Q174* 0.57 TCGA-OR-A5KB-01 11 103818444 103818444 G T PDGFD Missense_Mutation p.F173L 0.57 tolerated(0.33) benign(0.008) TCGA-OR-A5KB-01 11 108236144 108236144 G T ATM Missense_Mutation p.S3027I 0.60 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 11 110482045 110482045 C A ARHGAP20 Missense_Mutation p.M232I 0.50 tolerated(0.22) benign(0.026) TCGA-OR-A5KB-01 11 111956172 111956172 C A TIMM8B Missense_Mutation p.M48I 0.58 deleterious(0.01) benign(0.121) TCGA-OR-A5KB-01 11 112087010 112087010 A C BCO2 Missense_Mutation p.E528A 0.60 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 11 113660150 113660150 C A ATF4P4 RNA 0.65 TCGA-OR-A5KB-01 11 117691574 117691574 C T FXYD2 Missense_Mutation p.R59K 0.55 tolerated(0.13) probably_damaging(0.997) TCGA-OR-A5KB-01 11 118038851 118038851 G C SCN2B Missense_Mutation p.P133A 0.64 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 11 120998820 120998820 G C TECTA Missense_Mutation p.V712L 0.60 tolerated(0.68) benign(0.004) TCGA-OR-A5KB-01 11 122929389 122929389 C A HSPA8 Silent p.V491V 0.44 TCGA-OR-A5KB-01 11 122929391 122929391 C A HSPA8 Missense_Mutation p.V491L 0.44 tolerated_low_confidence(0.18) benign(0.093) TCGA-OR-A5KB-01 11 123396715 123396715 C T GRAMD1B 5'UTR 0.48 TCGA-OR-A5KB-01 11 123847992 123847992 C A OR10S1 Missense_Mutation p.R136L 0.57 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 11 124015980 124015980 G T VWA5A Missense_Mutation p.V731L 0.67 tolerated(0.7) benign(0.025) TCGA-OR-A5KB-01 11 124440239 124440239 C T OR8A1 Missense_Mutation p.S92F 0.55 deleterious(0) probably_damaging(0.966) TCGA-OR-A5KB-01 11 124933207 124933207 C G SLC37A2 5'Flank 0.31 TCGA-OR-A5KB-01 11 1269567 1269567 G T MUC5B Missense_Mutation p.M3819I 0.48 unknown(0) TCGA-OR-A5KB-01 11 132204993 132204993 G T NTM Missense_Mutation p.V341F 0.58 tolerated(0.4) benign(0.152) TCGA-OR-A5KB-01 11 14063180 14063180 G A SPON1 RNA 0.54 TCGA-OR-A5KB-01 11 1464775 1464775 G T BRSK2 Silent p.R276R 0.55 TCGA-OR-A5KB-01 11 15197588 15197588 G T INSC Nonsense_Mutation p.E167* 0.40 TCGA-OR-A5KB-01 11 16256218 16256218 C A SOX6 Splice_Site p.X149_splice 0.50 TCGA-OR-A5KB-01 11 17552712 17552712 C A USH1C Missense_Mutation p.V126F 0.58 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 11 17634220 17634220 G T OTOG Missense_Mutation p.V2128L 0.51 benign(0.018) TCGA-OR-A5KB-01 11 21596527 21596527 G T NELL1 Missense_Mutation p.V798F 0.46 deleterious(0) possibly_damaging(0.646) TCGA-OR-A5KB-01 11 22363120 22363120 G C SLC17A6 Missense_Mutation p.E45Q 0.58 tolerated(0.11) benign(0.175) TCGA-OR-A5KB-01 11 22399006 22399006 G T SLC17A6 Missense_Mutation p.G490V 0.59 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 11 30034154 30034154 C A KCNA4 Missense_Mutation p.Q24H 0.33 tolerated_low_confidence(0.09) unknown(0) TCGA-OR-A5KB-01 11 30915876 30915876 C A DCDC1 Silent p.V1604V 0.47 TCGA-OR-A5KB-01 11 32414240 32414240 C A WT1 Missense_Mutation p.Q437H 0.55 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-OR-A5KB-01 11 32635948 32635948 G T CCDC73 Missense_Mutation p.P639H 0.55 tolerated(0.72) possibly_damaging(0.839) TCGA-OR-A5KB-01 11 32956724 32956724 G T QSER1 Missense_Mutation p.R1178L 0.49 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5KB-01 11 33564462 33564462 A T KIAA1549L Silent p.S154S 0.51 TCGA-OR-A5KB-01 11 35453941 35453941 A C PAMR1 Missense_Mutation p.L726R 0.46 tolerated(0.6) possibly_damaging(0.776) TCGA-OR-A5KB-01 11 35457622 35457622 G T PAMR1 Missense_Mutation p.P405T 0.56 tolerated(0.07) possibly_damaging(0.575) TCGA-OR-A5KB-01 11 36596616 36596616 G T RAG1 Missense_Mutation p.D588Y 0.55 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OR-A5KB-01 11 40137767 40137767 G T LRRC4C Missense_Mutation p.L26M 0.51 tolerated(0.11) benign(0.405) TCGA-OR-A5KB-01 11 418479 418479 C T ANO9 Missense_Mutation p.M747I 0.47 tolerated(0.06) benign(0.003) TCGA-OR-A5KB-01 11 4592668 4592668 C G C11orf40 Missense_Mutation p.L213F 0.60 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-OR-A5KB-01 11 4676366 4676366 G T OR51E1 3'UTR 0.61 TCGA-OR-A5KB-01 11 46880716 46880716 C A LRP4 Missense_Mutation p.D1846Y 0.30 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-OR-A5KB-01 11 48328090 48328090 G C OR4S1 Missense_Mutation p.G106R 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 11 49195014 49195014 G A FOLH1 Silent p.L374L 0.48 TCGA-OR-A5KB-01 11 4968178 4968178 G T OR51A4 Silent p.I51I 0.60 TCGA-OR-A5KB-01 11 51515827 51515827 G T OR4C46 Missense_Mutation p.L182F 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.658) TCGA-OR-A5KB-01 11 5270816 5270816 G T HBG1 Missense_Mutation p.L33M 0.50 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KB-01 11 55371701 55371701 C T OR4C11 Missense_Mutation p.S50N 0.66 deleterious(0.05) benign(0.12) TCGA-OR-A5KB-01 11 55432829 55432829 T A OR4C6 Missense_Mutation p.F63I 0.60 deleterious_low_confidence(0.02) benign(0.081) TCGA-OR-A5KB-01 11 55433022 55433022 C A OR4C6 Missense_Mutation p.P127H 0.42 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-OR-A5KB-01 11 55433023 55433023 C A OR4C6 Silent p.P127P 0.41 TCGA-OR-A5KB-01 11 55606310 55606310 C T OR5D16 Missense_Mutation p.P28L 0.56 tolerated(0.1) benign(0.016) TCGA-OR-A5KB-01 11 55681212 55681212 G C OR5W2 Missense_Mutation p.P283A 0.30 deleterious(0) probably_damaging(0.971) TCGA-OR-A5KB-01 11 56058500 56058500 G T OR8H1 Silent p.I13I 0.56 TCGA-OR-A5KB-01 11 56143148 56143148 C A OR8U1 Missense_Mutation p.L17I 0.61 tolerated(0.55) benign(0.02) TCGA-OR-A5KB-01 11 56185247 56185247 C A OR5R1 Silent p.L154L 0.59 TCGA-OR-A5KB-01 11 57970677 57970677 C G OR1S2 Nonstop_Mutation p.*326Sext*? 0.64 TCGA-OR-A5KB-01 11 58170454 58170454 G A OR5B3 Silent p.A143A 0.58 TCGA-OR-A5KB-01 11 58190520 58190520 G T OR5B2 Missense_Mutation p.S72Y 0.62 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-OR-A5KB-01 11 58207133 58207133 G A OR5B12 Silent p.L164L 0.58 TCGA-OR-A5KB-01 11 5878658 5878658 C G OR52E8 Missense_Mutation p.W92S 0.55 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 11 59132631 59132631 G T OR5AN1 Missense_Mutation p.G234C 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 11 60274667 60274667 T C MS4A12 3'UTR 0.53 TCGA-OR-A5KB-01 11 60617436 60617436 G T CCDC86 Missense_Mutation p.E304D 0.48 deleterious(0.02) possibly_damaging(0.785) TCGA-OR-A5KB-01 11 607214 607214 A T PHRF1 Missense_Mutation p.Q585H 0.69 tolerated(0.65) possibly_damaging(0.846) TCGA-OR-A5KB-01 11 61404476 61404476 G T RPLP0P2 RNA 0.66 TCGA-OR-A5KB-01 11 61533677 61533677 G T MYRF Missense_Mutation p.A128S 0.62 deleterious(0.04) probably_damaging(0.984) TCGA-OR-A5KB-01 11 6245247 6245247 C A FAM160A2 Nonsense_Mutation p.E124* 0.49 TCGA-OR-A5KB-01 11 62886491 62886491 G T SLC22A24 Nonsense_Mutation p.Y241* 0.63 TCGA-OR-A5KB-01 11 63885551 63885551 G A FLRT1 Silent p.G604G 0.46 TCGA-OR-A5KB-01 11 64375221 64375221 G A NRXN2 Missense_Mutation p.P1529L 0.48 tolerated(0.1) benign(0) TCGA-OR-A5KB-01 11 64402917 64402917 G T NRXN2 Silent p.T1137T 0.33 TCGA-OR-A5KB-01 11 64855517 64855517 G T ZFPL1 Silent p.R288R 0.42 TCGA-OR-A5KB-01 11 65340987 65340987 G T FAM89B Missense_Mutation p.G149C 0.12 deleterious(0.04) probably_damaging(0.982) TCGA-OR-A5KB-01 11 66062127 66062127 C A TMEM151A Missense_Mutation p.A137E 0.22 tolerated(1) benign(0.004) TCGA-OR-A5KB-01 11 66326794 66326794 A G CTSF 3'Flank 0.36 TCGA-OR-A5KB-01 11 66366693 66366693 G T CCS Silent p.A73A 0.21 TCGA-OR-A5KB-01 11 66466921 66466921 G C SPTBN2 Missense_Mutation p.I1244M 0.40 tolerated(0.05) benign(0.224) TCGA-OR-A5KB-01 11 6661671 6661671 C A DCHS1 Missense_Mutation p.D392Y 0.50 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 11 66743905 66743905 C T C11orf86 3'UTR 0.33 TCGA-OR-A5KB-01 11 66838961 66838961 G A RHOD Missense_Mutation p.R174Q 0.21 deleterious(0.02) possibly_damaging(0.886) TCGA-OR-A5KB-01 11 67219676 67219676 C T GPR152 Missense_Mutation p.V174I 0.38 tolerated(0.27) benign(0.036) TCGA-OR-A5KB-01 11 67222856 67222856 C A CABP4 5'UTR 0.20 TCGA-OR-A5KB-01 11 67264702 67264702 C A PITPNM1 Missense_Mutation p.A716S 0.42 tolerated(0.84) benign(0.007) TCGA-OR-A5KB-01 11 6913108 6913108 G T OR2D2 Silent p.L208L 0.54 TCGA-OR-A5KB-01 11 6942958 6942958 C A OR2D3 Silent p.I242I 0.50 TCGA-OR-A5KB-01 11 69625429 69625429 G T FGF3 Missense_Mutation p.H122N 0.50 deleterious(0.01) possibly_damaging(0.854) TCGA-OR-A5KB-01 11 70331792 70331792 C A SHANK2 Missense_Mutation p.G1537W 0.47 deleterious(0) probably_damaging(0.965) TCGA-OR-A5KB-01 11 71259735 71259735 G T KRTAP5-9 Missense_Mutation p.G11V 0.57 unknown(0) TCGA-OR-A5KB-01 11 73687909 73687909 T A UCP2 Missense_Mutation p.K164M 0.51 deleterious(0.03) possibly_damaging(0.707) TCGA-OR-A5KB-01 11 74978733 74978733 T A ARRB1 Missense_Mutation p.T370S 0.67 tolerated(0.42) benign(0.001) TCGA-OR-A5KB-01 11 75563004 75563004 A T UVRAG Missense_Mutation p.Y65F 0.54 tolerated(0.14) benign(0.032) TCGA-OR-A5KB-01 11 7817640 7817640 G T OR5P2 Missense_Mutation p.L284M 0.58 deleterious(0.01) benign(0.303) TCGA-OR-A5KB-01 11 7981838 7981839 - T NLRP10 Frame_Shift_Ins p.P441Tfs*9 0.36 TCGA-OR-A5KB-01 11 87013485 87013485 G T TMEM135 Splice_Site p.X233_splice 0.41 TCGA-OR-A5KB-01 11 88045699 88045699 C G CTSC Silent p.V114V 0.53 TCGA-OR-A5KB-01 11 88242036 88242036 G A GRM5 Silent p.I1121I 0.45 TCGA-OR-A5KB-01 11 89223635 89223635 C G NOX4 Missense_Mutation p.Q48H 0.62 deleterious(0.04) benign(0.016) TCGA-OR-A5KB-01 11 92534391 92534391 G A FAT3 Missense_Mutation p.V2738I 0.56 benign(0.062) TCGA-OR-A5KB-01 11 92616454 92616455 - G FAT3 Frame_Shift_Ins p.V4280Rfs*33 0.34 TCGA-OR-A5KB-01 11 94039684 94039684 C T FOLR4 Silent p.I48I 0.49 TCGA-OR-A5KB-01 11 99942487 99942487 A T CNTN5 Missense_Mutation p.Q450H 0.62 deleterious(0) possibly_damaging(0.886) TCGA-OR-A5KB-01 12 101603553 101603553 G T SLC5A8 Nonsense_Mutation p.S25* 0.72 TCGA-OR-A5KB-01 12 102055036 102055036 C A MYBPC1 Silent p.I651I 0.58 TCGA-OR-A5KB-01 12 102055037 102055037 C A MYBPC1 Missense_Mutation p.L652I 0.58 tolerated(0.13) probably_damaging(0.997) TCGA-OR-A5KB-01 12 10374492 10374492 G T GABARAPL1 3'UTR 0.62 TCGA-OR-A5KB-01 12 105424132 105424132 G T ALDH1L2 Missense_Mutation p.P829H 0.64 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 12 105629829 105629829 C G APPL2 5'UTR 0.67 TCGA-OR-A5KB-01 12 10782211 10782211 C A STYK1 Missense_Mutation p.G172W 0.53 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 12 108003971 108003971 G T BTBD11 Missense_Mutation p.D550Y 0.77 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 12 110231758 110231758 C A TRPV4 Missense_Mutation p.G521W 0.75 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 12 112130583 112130583 A C ACAD10 Missense_Mutation p.T24P 0.63 tolerated_low_confidence(0.32) benign(0.015) TCGA-OR-A5KB-01 12 112701980 112701980 G C HECTD4 Missense_Mutation p.Q742E 0.20 possibly_damaging(0.827) TCGA-OR-A5KB-01 12 113304642 113304642 G A RPH3A Silent p.R147R 0.65 TCGA-OR-A5KB-01 12 114793514 114793514 G T TBX5 Silent p.S460S 0.66 TCGA-OR-A5KB-01 12 115112157 115112157 C G TBX3 Missense_Mutation p.G528A 0.46 tolerated(0.52) probably_damaging(0.999) TCGA-OR-A5KB-01 12 116444164 116444165 - C MED13L Frame_Shift_Ins p.P764Rfs*4 0.38 TCGA-OR-A5KB-01 12 117274029 117274029 G T RNFT2 Missense_Mutation p.G381V 0.73 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 12 117768276 117768276 C A NOS1 Missense_Mutation p.G200V 0.54 tolerated_low_confidence(0.08) benign(0.001) TCGA-OR-A5KB-01 12 118841234 118841234 G T SUDS3 Nonsense_Mutation p.E239* 0.67 TCGA-OR-A5KB-01 12 119594333 119594333 C A SRRM4 Silent p.P522P 0.57 TCGA-OR-A5KB-01 12 119926594 119926594 C A CCDC60 Silent p.L160L 0.72 TCGA-OR-A5KB-01 12 120534967 120534967 G A RAB35 3'UTR 0.31 TCGA-OR-A5KB-01 12 122413555 122413555 C T WDR66 Silent p.V990V 0.22 TCGA-OR-A5KB-01 12 124335466 124335466 G T DNAH10 Missense_Mutation p.R1927L 0.74 possibly_damaging(0.626) TCGA-OR-A5KB-01 12 126135311 126135311 C A TMEM132B Missense_Mutation p.R571S 0.71 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 12 14578095 14578095 G T ATF7IP Nonsense_Mutation p.E416* 0.63 TCGA-OR-A5KB-01 12 1994182 1994182 G T CACNA2D4 Missense_Mutation p.L377M 0.66 tolerated(0.18) possibly_damaging(0.841) TCGA-OR-A5KB-01 12 20523173 20523173 G T PDE3A Nonsense_Mutation p.E319* 0.67 TCGA-OR-A5KB-01 12 20886031 20886031 T A SLCO1C1 Missense_Mutation p.Y459N 0.60 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 12 23893815 23893815 G T SOX5 Missense_Mutation p.Q243K 0.67 deleterious(0) probably_damaging(0.966) TCGA-OR-A5KB-01 12 24737057 24737057 C A LINC00477 RNA 0.57 TCGA-OR-A5KB-01 12 27915672 27915672 T A MANSC4 Nonstop_Mutation p.*341Lext*? 0.51 TCGA-OR-A5KB-01 12 28605587 28605587 G C CCDC91 Missense_Mutation p.Q367H 0.40 deleterious(0) possibly_damaging(0.889) TCGA-OR-A5KB-01 12 28702231 28702231 G T CCDC91 3'UTR 0.79 TCGA-OR-A5KB-01 12 29598275 29598275 C A OVCH1 Missense_Mutation p.R939S 0.64 deleterious(0.03) benign(0.199) TCGA-OR-A5KB-01 12 29607850 29607850 C A OVCH1 Missense_Mutation p.Q818H 0.59 tolerated(0.05) benign(0.08) TCGA-OR-A5KB-01 12 29628092 29628092 G T OVCH1 Nonsense_Mutation p.S501* 0.70 TCGA-OR-A5KB-01 12 29908758 29908758 C A TMTC1 Missense_Mutation p.L205F 0.58 tolerated(0.13) probably_damaging(0.991) TCGA-OR-A5KB-01 12 32134534 32134534 A T KIAA1551 Silent p.P215P 0.70 TCGA-OR-A5KB-01 12 32136907 32136907 A T KIAA1551 Silent p.T1006T 0.66 TCGA-OR-A5KB-01 12 39695356 39695356 C A KIF21A Silent p.V1619V 0.73 TCGA-OR-A5KB-01 12 41463834 41463834 C A CNTN1 Missense_Mutation p.F1018L 0.67 tolerated_low_confidence(0.72) benign(0.153) TCGA-OR-A5KB-01 12 43821221 43821221 C A ADAMTS20 Missense_Mutation p.D1333Y 0.62 deleterious(0) probably_damaging(0.986) TCGA-OR-A5KB-01 12 44142372 44142372 C A PUS7L Silent p.A317A 0.68 TCGA-OR-A5KB-01 12 44190794 44190794 C A TWF1 Missense_Mutation p.M296I 0.71 tolerated(0.65) benign(0.002) TCGA-OR-A5KB-01 12 45444412 45444412 C G DBX2 Missense_Mutation p.G100A 0.44 tolerated(0.68) benign(0.004) TCGA-OR-A5KB-01 12 4554551 4554551 G C FGF6 Silent p.R62R 0.60 TCGA-OR-A5KB-01 12 45742042 45742042 G C ANO6 Missense_Mutation p.D214H 0.24 tolerated(0.56) possibly_damaging(0.701) TCGA-OR-A5KB-01 12 4829958 4829958 G T GALNT8 Missense_Mutation p.G39C 0.63 deleterious_low_confidence(0) possibly_damaging(0.498) TCGA-OR-A5KB-01 12 4920365 4920365 G A KCNA6 Silent p.G386G 0.68 TCGA-OR-A5KB-01 12 49485010 49485010 G T DHH Missense_Mutation p.R156S 0.72 deleterious(0) probably_damaging(0.917) TCGA-OR-A5KB-01 12 50195681 50195681 T A NCKAP5L Missense_Mutation p.S101C 0.70 tolerated(0.35) probably_damaging(0.999) TCGA-OR-A5KB-01 12 5027419 5027419 G T KCNA1 3'Flank 0.57 TCGA-OR-A5KB-01 12 50746537 50746537 C G FAM186A Missense_Mutation p.G1360R 0.82 deleterious(0.01) probably_damaging(0.987) TCGA-OR-A5KB-01 12 5153809 5153809 G T KCNA5 Missense_Mutation p.D166Y 0.70 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 12 52967215 52967215 G A KRT74 Missense_Mutation p.T116I 0.46 tolerated(0.06) benign(0.077) TCGA-OR-A5KB-01 12 53012266 53012266 C A KRT73 Missense_Mutation p.G15W 0.69 deleterious(0.03) possibly_damaging(0.807) TCGA-OR-A5KB-01 12 53494882 53494882 C T IGFBP6 Nonsense_Mutation p.R180* 0.67 TCGA-OR-A5KB-01 12 5604274 5604274 A T NTF3 3'UTR 0.57 TCGA-OR-A5KB-01 12 56487188 56487188 C T ERBB3 Missense_Mutation p.S445F 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 12 6030236 6030236 C A ANO2 Missense_Mutation p.E164D 0.73 tolerated(0.2) benign(0.014) TCGA-OR-A5KB-01 12 6078387 6078387 G T VWF Missense_Mutation p.S2573R 0.65 tolerated(0.18) benign(0) TCGA-OR-A5KB-01 12 6125362 6125362 G C VWF Nonsense_Mutation p.S1783* 0.26 TCGA-OR-A5KB-01 12 65122777 65122777 T A GNS Missense_Mutation p.N387Y 0.56 tolerated(0.13) benign(0.063) TCGA-OR-A5KB-01 12 66838367 66838367 C G GRIP1 Missense_Mutation p.A510P 0.56 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5KB-01 12 6760126 6760126 C A ING4 3'UTR 0.90 TCGA-OR-A5KB-01 12 6883823 6883823 A T LAG3 Missense_Mutation p.S192C 0.63 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 12 71972663 71972663 C G LGR5 Missense_Mutation p.H454D 0.63 tolerated(0.23) benign(0.002) TCGA-OR-A5KB-01 12 71978418 71978418 C G LGR5 Missense_Mutation p.I876M 0.58 tolerated(0.21) benign(0.025) TCGA-OR-A5KB-01 12 72680494 72680494 T G TRHDE Missense_Mutation p.H271Q 0.63 deleterious(0.04) probably_damaging(0.987) TCGA-OR-A5KB-01 12 7528358 7528358 G A CD163L1 Missense_Mutation p.P875L 0.70 deleterious(0) probably_damaging(0.988) TCGA-OR-A5KB-01 12 8212382 8212382 G C C3AR1 Missense_Mutation p.R134G 0.62 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 12 85255765 85255765 G C SLC6A15 Missense_Mutation p.S613R 0.43 tolerated(0.54) benign(0.004) TCGA-OR-A5KB-01 12 8813475 8813475 G T MFAP5 Silent p.V26V 0.58 TCGA-OR-A5KB-01 12 9334698 9334698 G T PZP Missense_Mutation p.A521D 0.64 tolerated(0.13) benign(0.038) TCGA-OR-A5KB-01 12 9353011 9353011 G T PZP Missense_Mutation p.P235Q 0.58 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5KB-01 12 98126411 98126411 G A RP11-1016B18.1 RNA 0.47 TCGA-OR-A5KB-01 12 98940166 98940166 A G TMPO Silent p.V231V 0.61 TCGA-OR-A5KB-01 13 101736110 101736110 T G NALCN Missense_Mutation p.K1179Q 0.20 deleterious(0) possibly_damaging(0.585) TCGA-OR-A5KB-01 13 101755576 101755576 G T NALCN Missense_Mutation p.Q1002K 0.28 tolerated(0.1) benign(0.173) TCGA-OR-A5KB-01 13 101757250 101757250 T A NALCN Missense_Mutation p.Q877H 0.32 tolerated(0.05) possibly_damaging(0.827) TCGA-OR-A5KB-01 13 102029346 102029346 C A NALCN Missense_Mutation p.R146L 0.21 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 13 103388356 103388356 G T CCDC168 Silent p.P268P 0.26 TCGA-OR-A5KB-01 13 103388670 103388670 G T CCDC168 Missense_Mutation p.H164N 0.27 tolerated(0.37) benign(0.216) TCGA-OR-A5KB-01 13 103701772 103701772 C T SLC10A2 Silent p.T262T 0.22 TCGA-OR-A5KB-01 13 110850953 110850953 A G COL4A1 Silent p.G382G 0.30 TCGA-OR-A5KB-01 13 113508734 113508734 G C ATP11A Silent p.L711L 0.22 TCGA-OR-A5KB-01 13 113839829 113839829 C A PCID2 Silent p.L225L 0.22 TCGA-OR-A5KB-01 13 114322346 114322346 G T GRK1 Silent p.L215L 0.28 TCGA-OR-A5KB-01 13 24515605 24515605 G T ANKRD20A19P RNA 0.38 TCGA-OR-A5KB-01 13 25363494 25363494 G T RNF17 Silent p.R264R 0.35 TCGA-OR-A5KB-01 13 26620557 26620557 C A SHISA2 3'UTR 0.78 TCGA-OR-A5KB-01 13 26923272 26923272 G T CDK8 Missense_Mutation p.D90Y 0.35 deleterious(0) probably_damaging(0.91) TCGA-OR-A5KB-01 13 29599201 29599201 G T MTUS2 Missense_Mutation p.Q132H 0.39 deleterious(0.04) benign(0.039) TCGA-OR-A5KB-01 13 29599429 29599429 A G MTUS2 Silent p.L208L 0.43 TCGA-OR-A5KB-01 13 29600623 29600623 G T MTUS2 Silent p.G606G 0.34 TCGA-OR-A5KB-01 13 30054476 30054476 G C MTUS2 Missense_Mutation p.S1135T 0.34 deleterious(0.02) benign(0.089) TCGA-OR-A5KB-01 13 36699966 36699966 C A DCLK1 Missense_Mutation p.Q103H 0.29 tolerated(0.2) unknown(0) TCGA-OR-A5KB-01 13 37270212 37270212 T A SERTM1 3'UTR 0.19 TCGA-OR-A5KB-01 13 37427574 37427574 G A SMAD9 Silent p.I414I 0.28 TCGA-OR-A5KB-01 13 37582275 37582275 G T EXOSC8 Missense_Mutation p.R190I 0.13 tolerated(0.2) benign(0.001) TCGA-OR-A5KB-01 13 39264618 39264618 G T FREM2 Missense_Mutation p.G1046V 0.38 deleterious(0) benign(0.016) TCGA-OR-A5KB-01 13 41932560 41932560 G T NAA16 Missense_Mutation p.S403I 0.24 tolerated(0.08) benign(0.307) TCGA-OR-A5KB-01 13 43896519 43896519 C A ENOX1 Splice_Site p.X421_splice 0.37 TCGA-OR-A5KB-01 13 45147767 45147767 G A TSC22D1 Missense_Mutation p.S815L 0.33 deleterious(0.02) benign(0.034) TCGA-OR-A5KB-01 13 46952065 46952065 G T KIAA0226L 5'UTR 0.26 TCGA-OR-A5KB-01 13 47297444 47297444 G T LRCH1 Missense_Mutation p.E616D 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5KB-01 13 47469863 47469863 C A HTR2A Missense_Mutation p.C60F 0.26 tolerated_low_confidence(0.71) benign(0.005) TCGA-OR-A5KB-01 13 48830474 48830474 G T ITM2B Missense_Mutation p.E136D 0.21 tolerated(0.18) benign(0.159) TCGA-OR-A5KB-01 13 49282054 49282054 C T CYSLTR2 3'UTR 0.29 TCGA-OR-A5KB-01 13 50205070 50205070 C G ARL11 Missense_Mutation p.P163A 0.38 tolerated(0.54) benign(0.016) TCGA-OR-A5KB-01 13 53420741 53420741 G T PCDH8 Missense_Mutation p.H611N 0.26 tolerated(0.13) benign(0.007) TCGA-OR-A5KB-01 13 53422274 53422274 G T PCDH8 Missense_Mutation p.P100T 0.27 tolerated(0.34) benign(0.028) TCGA-OR-A5KB-01 13 53624443 53624443 C A OLFM4 Missense_Mutation p.T357K 0.26 tolerated(0.17) benign(0.025) TCGA-OR-A5KB-01 13 58208469 58208469 G T PCDH17 Missense_Mutation p.V597L 0.31 tolerated(0.33) possibly_damaging(0.897) TCGA-OR-A5KB-01 13 58208760 58208760 C G PCDH17 Missense_Mutation p.R694G 0.25 tolerated(0.43) benign(0.061) TCGA-OR-A5KB-01 13 58240856 58240856 G T PCDH17 Missense_Mutation p.D896Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 13 67205483 67205483 C A PCDH9 Missense_Mutation p.G1067C 0.24 deleterious(0) probably_damaging(0.947) TCGA-OR-A5KB-01 13 70281793 70281793 C A KLHL1 Missense_Mutation p.M717I 0.23 tolerated(0.13) benign(0.012) TCGA-OR-A5KB-01 13 70281794 70281794 A G KLHL1 Missense_Mutation p.M717T 0.23 deleterious(0) benign(0.278) TCGA-OR-A5KB-01 13 70681349 70681349 T A KLHL1 Missense_Mutation p.E161D 0.28 tolerated_low_confidence(0.25) benign(0.001) TCGA-OR-A5KB-01 13 72014765 72014765 G T DACH1 3'UTR 0.17 TCGA-OR-A5KB-01 13 72063190 72063190 G A DACH1 Missense_Mutation p.P556L 0.23 benign(0.219) TCGA-OR-A5KB-01 13 72063191 72063191 G T DACH1 Missense_Mutation p.P556T 0.23 possibly_damaging(0.808) TCGA-OR-A5KB-01 13 75915278 75915278 T C TBC1D4 Missense_Mutation p.I532V 0.26 tolerated(0.26) benign(0.1) TCGA-OR-A5KB-01 13 77870754 77870754 T C MYCBP2 Missense_Mutation p.K82E 0.30 probably_damaging(0.952) TCGA-OR-A5KB-01 13 78492683 78492683 C G EDNRB Missense_Mutation p.G99A 0.31 tolerated_low_confidence(1) benign(0.02) TCGA-OR-A5KB-01 13 79176516 79176516 C A POU4F1 Silent p.L98L 0.37 TCGA-OR-A5KB-01 13 79177503 79177503 C A POU4F1 5'UTR 0.26 TCGA-OR-A5KB-01 13 79191112 79191112 C A RNF219 Nonsense_Mutation p.E262* 0.24 TCGA-OR-A5KB-01 13 84455469 84455469 G T SLITRK1 Silent p.S58S 0.24 TCGA-OR-A5KB-01 13 86368998 86368998 G T SLITRK6 Missense_Mutation p.P549H 0.17 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 13 92051320 92051320 C A GPC5 Missense_Mutation p.P7H 0.21 deleterious_low_confidence(0.02) benign(0.17) TCGA-OR-A5KB-01 13 92345810 92345810 G T GPC5 Missense_Mutation p.G232V 0.30 deleterious(0.03) probably_damaging(0.955) TCGA-OR-A5KB-01 13 95121092 95121092 C A DCT Missense_Mutation p.G168V 0.23 deleterious(0) probably_damaging(0.983) TCGA-OR-A5KB-01 13 96743551 96743551 C G HS6ST3 Silent p.R145R 0.32 TCGA-OR-A5KB-01 13 99948095 99948095 G C GPR183 Missense_Mutation p.A102G 0.28 tolerated(0.39) benign(0.048) TCGA-OR-A5KB-01 14 101351118 101351118 T C RTL1 Missense_Mutation p.E3G 0.65 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-OR-A5KB-01 14 102027759 102027759 C A DIO3 5'UTR 0.77 TCGA-OR-A5KB-01 14 102028262 102028262 C G DIO3 Silent p.P143P 0.36 TCGA-OR-A5KB-01 14 102028894 102028894 C A DIO3 3'UTR 0.34 TCGA-OR-A5KB-01 14 102028992 102028992 C A DIO3 3'UTR 0.64 TCGA-OR-A5KB-01 14 103931918 103931918 G A MARK3 Missense_Mutation p.D189N 0.22 tolerated(0.07) probably_damaging(0.997) TCGA-OR-A5KB-01 14 104470600 104470600 G T TDRD9 Silent p.G503G 0.79 TCGA-OR-A5KB-01 14 104561948 104561948 C T ASPG Silent p.F128F 0.19 TCGA-OR-A5KB-01 14 104641745 104641745 G A KIF26A Missense_Mutation p.G874R 0.21 tolerated(0.05) possibly_damaging(0.708) TCGA-OR-A5KB-01 14 104641876 104641876 C T KIF26A Silent p.A917A 0.17 TCGA-OR-A5KB-01 14 105418991 105418991 C A AHNAK2 Missense_Mutation p.G933C 0.64 probably_damaging(0.996) TCGA-OR-A5KB-01 14 106391722 106391722 G C KIAA0125 3'Flank 0.21 TCGA-OR-A5KB-01 14 106668001 106668001 A G IGHV3-20 Silent p.V11V 0.42 TCGA-OR-A5KB-01 14 106805612 106805612 C A IGHV4-31 Silent p.V11V 0.30 TCGA-OR-A5KB-01 14 106967331 106967331 C A IGHV1-46 Silent p.L23L 0.28 TCGA-OR-A5KB-01 14 107170218 107170218 G T IGHV1-69 Missense_Mutation p.Q22K 0.08 deleterious(0.01) possibly_damaging(0.894) TCGA-OR-A5KB-01 14 19378109 19378109 G C OR11H12 Silent p.L172L 0.31 TCGA-OR-A5KB-01 14 20296018 20296018 C A OR4N2 Missense_Mutation p.N137K 0.48 deleterious(0.04) benign(0.016) TCGA-OR-A5KB-01 14 20845643 20845643 C A TEP1 Missense_Mutation p.G1962W 0.55 tolerated(0.06) benign(0.016) TCGA-OR-A5KB-01 14 23876252 23876252 C G MYH6 Missense_Mutation p.A61P 0.67 deleterious(0) possibly_damaging(0.861) TCGA-OR-A5KB-01 14 24542145 24542145 C G CPNE6 5'UTR 0.57 TCGA-OR-A5KB-01 14 24617561 24617561 A C RNF31 Missense_Mutation p.Q145P 0.49 deleterious(0.04) benign(0.442) TCGA-OR-A5KB-01 14 31926518 31926518 C T DTD2 Missense_Mutation p.D28N 0.25 tolerated(0.47) benign(0.067) TCGA-OR-A5KB-01 14 34419571 34419571 C A EGLN3 Intron 0.64 TCGA-OR-A5KB-01 14 35005309 35005309 G A EAPP Silent p.L83L 0.68 TCGA-OR-A5KB-01 14 35548204 35548204 G C FAM177A1 Missense_Mutation p.D160H 0.26 deleterious(0) probably_damaging(0.961) TCGA-OR-A5KB-01 14 42356483 42356483 G C LRFN5 Missense_Mutation p.A219P 0.54 tolerated(0.06) probably_damaging(0.947) TCGA-OR-A5KB-01 14 42356830 42356830 T A LRFN5 Silent p.S334S 0.49 TCGA-OR-A5KB-01 14 44974595 44974595 C A FSCB Missense_Mutation p.E532D 0.65 tolerated(0.11) possibly_damaging(0.479) TCGA-OR-A5KB-01 14 45693590 45693590 C T MIS18BP1 Missense_Mutation p.E734K 0.58 tolerated(0.62) benign(0.002) TCGA-OR-A5KB-01 14 45711445 45711445 C G MIS18BP1 Missense_Mutation p.G312A 0.47 tolerated(0.07) benign(0.162) TCGA-OR-A5KB-01 14 47342647 47342647 C G MDGA2 Missense_Mutation p.G914A 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 14 51355545 51355545 G A ABHD12B Missense_Mutation p.C235Y 0.62 tolerated(0.32) benign(0.053) TCGA-OR-A5KB-01 14 52485862 52485862 C A NID2 Missense_Mutation p.W982L 0.65 deleterious(0.05) probably_damaging(0.938) TCGA-OR-A5KB-01 14 52486816 52486816 G T NID2 Missense_Mutation p.Q919K 0.54 tolerated(0.42) benign(0.057) TCGA-OR-A5KB-01 14 58831980 58831980 G C ARID4A Missense_Mutation p.C1058S 0.65 tolerated(0.42) probably_damaging(0.996) TCGA-OR-A5KB-01 14 60632064 60632064 G C DHRS7 5'UTR 0.26 TCGA-OR-A5KB-01 14 60933637 60933637 G T C14orf39 Missense_Mutation p.A298E 0.59 tolerated(1) benign(0.052) TCGA-OR-A5KB-01 14 63779679 63779679 G C GPHB5 RNA 0.43 TCGA-OR-A5KB-01 14 64691758 64691758 G T SYNE2 Missense_Mutation p.E6837D 0.29 benign(0.003) TCGA-OR-A5KB-01 14 64935226 64935226 G C AKAP5 Missense_Mutation p.K38N 0.14 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 14 65209938 65209938 C G PLEKHG3 Silent p.S1003S 0.21 TCGA-OR-A5KB-01 14 68120200 68120200 C A VTI1B Nonsense_Mutation p.E186* 0.14 TCGA-OR-A5KB-01 14 70515629 70515629 G C SLC8A3 Silent p.G754G 0.64 TCGA-OR-A5KB-01 14 70634023 70634023 C A SLC8A3 Missense_Mutation p.A373S 0.67 tolerated(0.11) benign(0.179) TCGA-OR-A5KB-01 14 70926120 70926120 T A ADAM21 Missense_Mutation p.L635H 0.45 tolerated(0.09) benign(0.008) TCGA-OR-A5KB-01 14 70990144 70990144 C A ADAM20 Missense_Mutation p.G494V 0.36 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 14 72128143 72128143 C A SIPA1L1 Silent p.I738I 0.65 TCGA-OR-A5KB-01 14 73711367 73711367 C A PAPLN Silent p.R24R 0.62 TCGA-OR-A5KB-01 14 73750814 73750814 C T NUMB Silent p.K308K 0.21 TCGA-OR-A5KB-01 14 75018960 75018960 G A LTBP2 Silent p.S443S 0.73 TCGA-OR-A5KB-01 14 76149969 76149969 C T TTLL5 Missense_Mutation p.S114F 0.22 tolerated(0.18) benign(0.122) TCGA-OR-A5KB-01 14 77293035 77293035 G T C14orf166B Intron 0.40 TCGA-OR-A5KB-01 14 79175583 79175583 C T NRXN3 Silent p.I42I 0.57 TCGA-OR-A5KB-01 14 88971713 88971713 C A PTPN21 Missense_Mutation p.D151Y 0.08 deleterious(0) probably_damaging(0.959) TCGA-OR-A5KB-01 14 95030148 95030148 C A SERPINA4 Missense_Mutation p.T110N 0.46 deleterious(0.04) probably_damaging(0.974) TCGA-OR-A5KB-01 14 95030149 95030149 C G SERPINA4 Silent p.T110T 0.45 TCGA-OR-A5KB-01 14 95054239 95054239 G A SERPINA5 Silent p.T180T 0.66 TCGA-OR-A5KB-01 14 95916424 95916424 C T SYNE3 Silent p.A431A 0.20 TCGA-OR-A5KB-01 14 96813577 96813577 C A ATG2B Missense_Mutation p.Q88H 0.65 deleterious(0.02) probably_damaging(0.991) TCGA-OR-A5KB-01 14 97029218 97029218 G C PAPOLA Silent p.L710L 0.52 TCGA-OR-A5KB-01 15 100996194 100996194 G T CERS3 Nonsense_Mutation p.Y301* 0.19 TCGA-OR-A5KB-01 15 101565124 101565124 G A LRRK1 Silent p.L728L 0.45 TCGA-OR-A5KB-01 15 101922386 101922386 C G PCSK6 Silent p.V480V 0.33 TCGA-OR-A5KB-01 15 21071398 21071398 G T POTEB2 Nonsense_Mutation p.C71* 0.11 TCGA-OR-A5KB-01 15 22368578 22368578 G T OR4M2 Translation_Start_Site p.M1? 0.14 deleterious(0) probably_damaging(0.937) TCGA-OR-A5KB-01 15 22368613 22368613 T C OR4M2 Missense_Mutation p.V13A 0.24 deleterious(0.01) benign(0.13) TCGA-OR-A5KB-01 15 22382866 22382866 T G OR4N4 Missense_Mutation p.C132G 0.28 deleterious(0) benign(0) TCGA-OR-A5KB-01 15 22473208 22473208 C A IGHV4OR15-8 Silent p.V21V 0.08 TCGA-OR-A5KB-01 15 22855078 22855078 G T TUBGCP5 Silent p.T513T 0.11 TCGA-OR-A5KB-01 15 23889842 23889842 G T MAGEL2 Silent p.P413P 0.16 TCGA-OR-A5KB-01 15 24924656 24924656 C A NPAP1 3'UTR 0.26 TCGA-OR-A5KB-01 15 24924917 24924917 C T NPAP1 3'UTR 0.41 TCGA-OR-A5KB-01 15 26866612 26866612 G C GABRB3 Missense_Mutation p.L104V 0.13 tolerated(0.18) probably_damaging(0.999) TCGA-OR-A5KB-01 15 27182468 27182468 C A GABRA5 Silent p.T239T 0.55 TCGA-OR-A5KB-01 15 27193393 27193393 C A GABRA5 3'UTR 0.41 TCGA-OR-A5KB-01 15 27572125 27572125 C A GABRG3 Missense_Mutation p.P147H 0.42 deleterious(0.04) probably_damaging(1) TCGA-OR-A5KB-01 15 29346205 29346205 G T APBA2 Missense_Mutation p.G40C 0.25 deleterious_low_confidence(0.01) benign(0.443) TCGA-OR-A5KB-01 15 29400511 29400511 C T APBA2 Silent p.V652V 0.14 TCGA-OR-A5KB-01 15 31295069 31295069 C A TRPM1 Silent p.T1295T 0.53 TCGA-OR-A5KB-01 15 31776739 31776739 C G OTUD7A Silent p.V513V 0.37 TCGA-OR-A5KB-01 15 33300216 33300216 T A FMN1 Missense_Mutation p.Q518L 0.42 deleterious(0) unknown(0) TCGA-OR-A5KB-01 15 33944994 33944994 C A RYR3 Missense_Mutation p.N1406K 0.21 possibly_damaging(0.745) TCGA-OR-A5KB-01 15 34111987 34111987 C A RYR3 Silent p.S3579S 0.26 TCGA-OR-A5KB-01 15 34355202 34355202 G T CHRM5 Missense_Mutation p.R95L 0.42 tolerated(0.13) benign(0.341) TCGA-OR-A5KB-01 15 40094026 40094026 C A GPR176 Silent p.L285L 0.27 TCGA-OR-A5KB-01 15 40866479 40866479 G T RPUSD2 3'UTR 0.11 TCGA-OR-A5KB-01 15 41272438 41272438 G A INO80 Missense_Mutation p.P1552S 0.23 tolerated_low_confidence(0.72) benign(0) TCGA-OR-A5KB-01 15 42116197 42116197 C T MAPKBP1 Missense_Mutation p.P1390L 0.19 tolerated(0.73) benign(0.003) TCGA-OR-A5KB-01 15 42158294 42158294 C A SPTBN5 Missense_Mutation p.R2255L 0.15 benign(0.256) TCGA-OR-A5KB-01 15 42246065 42246065 T A EHD4 Missense_Mutation p.M104L 0.36 deleterious(0.02) possibly_damaging(0.881) TCGA-OR-A5KB-01 15 42246066 42246066 C T EHD4 Silent p.V103V 0.38 TCGA-OR-A5KB-01 15 42364533 42364533 G A PLA2G4D Silent p.L459L 0.23 TCGA-OR-A5KB-01 15 42503948 42503948 C G TMEM87A Splice_Site p.X543_splice 0.20 TCGA-OR-A5KB-01 15 43120176 43120176 C A TTBK2 Missense_Mutation p.D163Y 0.41 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 15 45405235 45405235 C A DUOX2 Missense_Mutation p.R37L 0.37 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 15 45406782 45406782 C A DUOXA2 5'UTR 0.46 TCGA-OR-A5KB-01 15 45409733 45409733 G A DUOXA1 Missense_Mutation p.R478C 0.45 deleterious_low_confidence(0) benign(0.066) TCGA-OR-A5KB-01 15 48431348 48431348 C A SLC24A5 Missense_Mutation p.L352M 0.41 tolerated(0.55) benign(0.304) TCGA-OR-A5KB-01 15 48802361 48802361 C A FBN1 Missense_Mutation p.D532Y 0.17 probably_damaging(1) TCGA-OR-A5KB-01 15 49135625 49135625 C A SHC4 Silent p.G488G 0.21 TCGA-OR-A5KB-01 15 49926822 49926822 C - DTWD1 Frame_Shift_Del p.N168Mfs*22 0.20 TCGA-OR-A5KB-01 15 50212566 50212566 G A ATP8B4 Silent p.Y600Y 0.25 TCGA-OR-A5KB-01 15 50897135 50897135 C A TRPM7 Missense_Mutation p.W972C 0.36 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 15 50941083 50941083 C A TRPM7 Splice_Site p.X41_splice 0.24 TCGA-OR-A5KB-01 15 54305438 54305438 A C UNC13C Missense_Mutation p.N113T 0.38 deleterious_low_confidence(0) benign(0.125) TCGA-OR-A5KB-01 15 62359893 62359893 C A C2CD4A Silent p.R27R 0.47 TCGA-OR-A5KB-01 15 63031744 63031744 G T TLN2 Missense_Mutation p.Q1295H 0.47 deleterious(0.04) benign(0.028) TCGA-OR-A5KB-01 15 65488966 65488966 C A CILP 3'UTR 0.11 TCGA-OR-A5KB-01 15 65884016 65884016 T A VWA9 Missense_Mutation p.N290I 0.40 deleterious(0) possibly_damaging(0.804) TCGA-OR-A5KB-01 15 69347714 69347714 G T NOX5 Silent p.L680L 0.19 TCGA-OR-A5KB-01 15 71433811 71433811 C T THSD4 5'UTR 0.31 TCGA-OR-A5KB-01 15 72502105 72502105 C A PKM Missense_Mutation p.W158C 0.43 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KB-01 15 74630208 74630208 G T CYP11A1 3'UTR 0.17 TCGA-OR-A5KB-01 15 75132951 75132951 C A ULK3 Missense_Mutation p.W167C 0.18 tolerated(0.05) benign(0.006) TCGA-OR-A5KB-01 15 75132952 75132952 C A ULK3 Missense_Mutation p.W167L 0.18 tolerated(0.3) benign(0.049) TCGA-OR-A5KB-01 15 78290603 78290603 C T TBC1D2B Missense_Mutation p.E931K 0.19 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 15 79237292 79237292 C T CTSH Missense_Mutation p.G11E 0.24 deleterious_low_confidence(0.01) benign(0.102) TCGA-OR-A5KB-01 15 79290536 79290536 G A RASGRF1 Silent p.N972N 0.03 TCGA-OR-A5KB-01 15 79585642 79585642 A T ANKRD34C Missense_Mutation p.T6S 0.42 tolerated(0.49) possibly_damaging(0.447) TCGA-OR-A5KB-01 15 79588844 79588844 C G ANKRD34C 3'UTR 0.29 TCGA-OR-A5KB-01 15 79589747 79589747 C T ANKRD34C 3'UTR 0.35 TCGA-OR-A5KB-01 15 79749156 79749156 G C KIAA1024 Missense_Mutation p.E223Q 0.25 deleterious(0.04) benign(0.078) TCGA-OR-A5KB-01 15 79760825 79760825 A T KIAA1024 3'UTR 0.56 TCGA-OR-A5KB-01 15 80216464 80216464 G T C15ORF37 3'UTR 0.43 TCGA-OR-A5KB-01 15 80767372 80767372 G C ARNT2 Missense_Mutation p.E144Q 0.42 tolerated(0.09) benign(0.001) TCGA-OR-A5KB-01 15 80800576 80800576 G A ARNT2 Silent p.R234R 0.52 TCGA-OR-A5KB-01 15 80869292 80869292 C A ARNT2 Silent p.S533S 0.16 TCGA-OR-A5KB-01 15 81218065 81218065 C A KIAA1199 Missense_Mutation p.R797S 0.47 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 15 81224296 81224296 C A KIAA1199 Silent p.T903T 0.38 TCGA-OR-A5KB-01 15 82555322 82555322 A T FAM154B Intron 0.46 TCGA-OR-A5KB-01 15 82574573 82574573 C T FAM154B Missense_Mutation p.P123S 0.11 deleterious(0.02) possibly_damaging(0.864) TCGA-OR-A5KB-01 15 86124843 86124843 G A AKAP13 Missense_Mutation p.E1182K 0.16 tolerated_low_confidence(0.19) benign(0.006) TCGA-OR-A5KB-01 15 86312878 86312878 C A KLHL25 Missense_Mutation p.R55L 0.24 deleterious(0.01) possibly_damaging(0.453) TCGA-OR-A5KB-01 15 86697774 86697774 C A AGBL1 Missense_Mutation p.R80S 0.16 deleterious(0) possibly_damaging(0.825) TCGA-OR-A5KB-01 15 86790916 86790916 A T AGBL1 Nonsense_Mutation p.R135* 0.29 TCGA-OR-A5KB-01 15 86800211 86800211 G T AGBL1 Missense_Mutation p.G242V 0.24 tolerated(0.25) probably_damaging(0.985) TCGA-OR-A5KB-01 15 88423642 88423642 C A NTRK3 Missense_Mutation p.M731I 0.53 deleterious(0.01) probably_damaging(0.975) TCGA-OR-A5KB-01 15 88472305 88472305 G A NTRK3 Intron 0.26 TCGA-OR-A5KB-01 15 88678626 88678626 G T NTRK3 Missense_Mutation p.P304T 0.19 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KB-01 15 96876498 96876498 G T NR2F2 Intron 0.25 TCGA-OR-A5KB-01 16 10769881 10769881 C A TEKT5 Missense_Mutation p.A341S 0.16 tolerated(0.11) probably_damaging(0.923) TCGA-OR-A5KB-01 16 10769882 10769882 C A TEKT5 Silent p.L340L 0.17 TCGA-OR-A5KB-01 16 11000690 11000690 T G CIITA Missense_Mutation p.F447L 0.23 tolerated(0.1) possibly_damaging(0.533) TCGA-OR-A5KB-01 16 15188105 15188105 G A RRN3 5'UTR 0.16 TCGA-OR-A5KB-01 16 1551665 1551665 A G TELO2 Missense_Mutation p.T455A 0.43 tolerated(0.76) benign(0) TCGA-OR-A5KB-01 16 15732947 15732947 C G KIAA0430 Silent p.T48T 0.41 TCGA-OR-A5KB-01 16 16425584 16425584 C G NPIPA7 5'Flank 0.15 TCGA-OR-A5KB-01 16 1706050 1706050 G CT CRAMP1L Frame_Shift_Ins p.R431Pfs*39 0.32 TCGA-OR-A5KB-01 16 17228440 17228440 G C XYLT1 Missense_Mutation p.D639E 0.17 deleterious(0.02) benign(0.416) TCGA-OR-A5KB-01 16 19628040 19628040 G T C16orf62 Silent p.V467V 0.27 TCGA-OR-A5KB-01 16 20327304 20327304 A C GP2 Missense_Mutation p.L495R 0.48 deleterious(0) probably_damaging(0.953) TCGA-OR-A5KB-01 16 20331586 20331586 C A GP2 Nonsense_Mutation p.E289* 0.28 TCGA-OR-A5KB-01 16 20476935 20476935 C T ACSM2A Nonsense_Mutation p.Q92* 0.13 TCGA-OR-A5KB-01 16 20548513 20548513 G T ACSM2B 3'UTR 0.18 TCGA-OR-A5KB-01 16 20548556 20548556 C A ACSM2B 3'UTR 0.54 TCGA-OR-A5KB-01 16 2079600 2079600 G T SLC9A3R2 Missense_Mutation p.K77N 0.16 deleterious(0.01) possibly_damaging(0.744) TCGA-OR-A5KB-01 16 21812104 21812104 T C RRN3P1 RNA 0.48 TCGA-OR-A5KB-01 16 22825984 22825984 G A HS3ST2 Missense_Mutation p.R18H 0.58 deleterious(0.04) possibly_damaging(0.522) TCGA-OR-A5KB-01 16 2284352 2284352 A G E4F1 Missense_Mutation p.Y519C 0.44 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KB-01 16 22926624 22926624 C A HS3ST2 Missense_Mutation p.A282D 0.48 deleterious(0) probably_damaging(0.985) TCGA-OR-A5KB-01 16 23716290 23716290 G C ERN2 Silent p.L304L 0.45 TCGA-OR-A5KB-01 16 24373179 24373179 G - CACNG3 Frame_Shift_Del p.V315Sfs*40 0.21 TCGA-OR-A5KB-01 16 24582830 24582830 G T RBBP6 Missense_Mutation p.E1481D 0.25 tolerated_low_confidence(1) unknown(0) TCGA-OR-A5KB-01 16 24909414 24909414 C G SLC5A11 Missense_Mutation p.S330R 0.25 deleterious(0) possibly_damaging(0.708) TCGA-OR-A5KB-01 16 27078584 27078584 G T C16orf82 RNA 0.30 TCGA-OR-A5KB-01 16 27079696 27079696 C G C16orf82 RNA 0.38 TCGA-OR-A5KB-01 16 27080201 27080201 C A C16orf82 RNA 0.14 TCGA-OR-A5KB-01 16 27709688 27709688 G T KIAA0556 Missense_Mutation p.R327L 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 16 2816143 2816143 A T SRRM2 Missense_Mutation p.T1872S 0.47 unknown(0) TCGA-OR-A5KB-01 16 2817256 2817256 G A SRRM2 Missense_Mutation p.A2243T 0.21 probably_damaging(0.954) TCGA-OR-A5KB-01 16 28970367 28970367 G T NFATC2IP Missense_Mutation p.Q349H 0.37 tolerated(0.12) probably_damaging(0.937) TCGA-OR-A5KB-01 16 28996126 28996126 A G LAT 5'Flank 0.28 TCGA-OR-A5KB-01 16 29086399 29086399 G A RRN3P2 RNA 0.49 TCGA-OR-A5KB-01 16 30035165 30035165 C A C16orf92 Missense_Mutation p.A83D 0.51 deleterious(0) probably_damaging(0.958) TCGA-OR-A5KB-01 16 30958250 30958250 G T FBXL19 Silent p.L629L 0.25 TCGA-OR-A5KB-01 16 31448301 31448301 C A ZNF843 5'UTR 0.25 TCGA-OR-A5KB-01 16 31477303 31477303 G T ARMC5 Missense_Mutation p.R666L 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 16 31927822 31927822 G A ZNF267 3'UTR 0.15 TCGA-OR-A5KB-01 16 3296527 3296527 G A MEFV Silent p.H536H 0.29 TCGA-OR-A5KB-01 16 335179 335179 G C PDIA2 Silent p.L258L 0.18 TCGA-OR-A5KB-01 16 335541 335541 T A PDIA2 Missense_Mutation p.N319K 0.20 tolerated(0.05) benign(0.261) TCGA-OR-A5KB-01 16 33647388 33647388 C A RP11-812E19.9 Missense_Mutation p.S71I 0.40 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-OR-A5KB-01 16 4164589 4164589 C A ADCY9 Silent p.G285G 0.40 TCGA-OR-A5KB-01 16 46637518 46637518 A C SHCBP1 Silent p.V382V 0.44 TCGA-OR-A5KB-01 16 48134826 48134826 C A ABCC12 Missense_Mutation p.G999C 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-OR-A5KB-01 16 48173122 48173122 G T ABCC12 Silent p.P261P 0.18 TCGA-OR-A5KB-01 16 48234290 48234290 G A ABCC11 Missense_Mutation p.P660L 0.53 deleterious(0.01) probably_damaging(0.99) TCGA-OR-A5KB-01 16 48265888 48265888 A G ABCC11 5'UTR 0.18 TCGA-OR-A5KB-01 16 50744557 50744557 G T NOD2 Silent p.T245T 0.22 TCGA-OR-A5KB-01 16 51173113 51173113 C G SALL1 Missense_Mutation p.G1007A 0.20 tolerated(0.07) possibly_damaging(0.742) TCGA-OR-A5KB-01 16 55360430 55360430 G T IRX6 Silent p.A76A 0.46 TCGA-OR-A5KB-01 16 55362936 55362936 C A IRX6 Missense_Mutation p.P349Q 0.19 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 16 55880508 55880508 C A CES5A Missense_Mutation p.G557V 0.51 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 16 56670842 56670842 G A MT1M 3'Flank 0.15 TCGA-OR-A5KB-01 16 56782300 56782300 C G NUP93 Silent p.T47T 0.41 TCGA-OR-A5KB-01 16 56936360 56936360 G A SLC12A3 Silent p.E941E 0.19 TCGA-OR-A5KB-01 16 57732900 57732900 C A CCDC135 Silent p.P114P 0.20 TCGA-OR-A5KB-01 16 57735916 57735916 G C CCDC135 Silent p.T191T 0.12 TCGA-OR-A5KB-01 16 58713931 58713931 C A SLC38A7 Missense_Mutation p.A34S 0.38 tolerated(0.75) benign(0.002) TCGA-OR-A5KB-01 16 58768113 58768113 C A GOT2 Missense_Mutation p.G7V 0.34 tolerated(0.3) benign(0.016) TCGA-OR-A5KB-01 16 602138 602138 G T CAPN15 Silent p.A811A 0.23 TCGA-OR-A5KB-01 16 61851398 61851398 G C CDH8 Missense_Mutation p.T421S 0.40 tolerated(0.63) benign(0.009) TCGA-OR-A5KB-01 16 67579578 67579578 C T FAM65A Missense_Mutation p.R1088W 0.46 deleterious(0) possibly_damaging(0.689) TCGA-OR-A5KB-01 16 67579579 67579579 G T FAM65A Missense_Mutation p.R1088L 0.47 deleterious(0) benign(0.25) TCGA-OR-A5KB-01 16 68012505 68012505 G T DPEP3 Missense_Mutation p.Q172K 0.22 tolerated(0.2) benign(0.059) TCGA-OR-A5KB-01 16 68012506 68012506 G T DPEP3 Nonsense_Mutation p.C171* 0.22 TCGA-OR-A5KB-01 16 68057594 68057594 A T DDX28 5'UTR 0.30 TCGA-OR-A5KB-01 16 684529 684529 G C C16orf13 Silent p.P205P 0.25 TCGA-OR-A5KB-01 16 70182454 70182454 G A PDPR Missense_Mutation p.E684K 0.12 deleterious(0) probably_damaging(0.957) TCGA-OR-A5KB-01 16 70498996 70498996 G A FUK Intron 0.16 TCGA-OR-A5KB-01 16 70512517 70512517 C T FUK Missense_Mutation p.R965W 0.46 deleterious(0.03) benign(0.339) TCGA-OR-A5KB-01 16 71888516 71888516 C T ATXN1L 3'UTR 0.16 TCGA-OR-A5KB-01 16 71988174 71988174 T A PKD1L3 RNA 0.24 TCGA-OR-A5KB-01 16 72032247 72032247 G C PKD1L3 RNA 0.37 TCGA-OR-A5KB-01 16 72144969 72144969 A T DHX38 Missense_Mutation p.S1198C 0.15 deleterious(0) possibly_damaging(0.502) TCGA-OR-A5KB-01 16 72993272 72993272 T A ZFHX3 Missense_Mutation p.K258I 0.50 probably_damaging(0.979) TCGA-OR-A5KB-01 16 74366467 74366467 C T AC009120.6 Intron 0.16 TCGA-OR-A5KB-01 16 74406 74406 G A WASH4P 5'Flank 0.14 TCGA-OR-A5KB-01 16 75634034 75634034 C G ADAT1 3'UTR 0.22 TCGA-OR-A5KB-01 16 75637040 75637040 C A ADAT1 Missense_Mutation p.R440I 0.12 deleterious(0.01) possibly_damaging(0.773) TCGA-OR-A5KB-01 16 76486501 76486501 G T CNTNAP4 Nonsense_Mutation p.E317* 0.31 TCGA-OR-A5KB-01 16 76555117 76555117 G C CNTNAP4 Missense_Mutation p.D743H 0.43 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 16 77913114 77913114 C A VAT1L Missense_Mutation p.A292E 0.18 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 16 78134045 78134045 G T WWOX Intron 0.27 TCGA-OR-A5KB-01 16 85743810 85743810 G T C16orf74 Silent p.T44T 0.39 TCGA-OR-A5KB-01 16 87445728 87445728 T A ZCCHC14 Missense_Mutation p.S730C 0.17 deleterious(0) unknown(0) TCGA-OR-A5KB-01 16 88494585 88494585 C G ZNF469 Missense_Mutation p.P236R 0.31 probably_damaging(0.979) TCGA-OR-A5KB-01 16 88495049 88495049 C A ZNF469 Missense_Mutation p.L391M 0.34 benign(0.054) TCGA-OR-A5KB-01 16 88502418 88502418 A T ZNF469 Missense_Mutation p.K2819M 0.25 benign(0.174) TCGA-OR-A5KB-01 16 88718870 88718870 C A MVD 3'UTR 0.29 TCGA-OR-A5KB-01 16 89998855 89998855 G T TUBB3 Intron 0.50 TCGA-OR-A5KB-01 17 10227550 10227550 C A MYH13 Missense_Mutation p.R908L 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-OR-A5KB-01 17 10293878 10293878 G T MYH8 Missense_Mutation p.Q1903K 0.19 deleterious(0) probably_damaging(0.961) TCGA-OR-A5KB-01 17 10303798 10303798 C A MYH8 Missense_Mutation p.R1215L 0.45 deleterious(0.01) possibly_damaging(0.806) TCGA-OR-A5KB-01 17 10304060 10304060 C A MYH8 Nonsense_Mutation p.E1128* 0.61 TCGA-OR-A5KB-01 17 10353829 10353829 C A MYH4 Missense_Mutation p.Q1374H 0.15 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 17 10356511 10356511 G T MYH4 Silent p.T1023T 0.46 TCGA-OR-A5KB-01 17 10357111 10357111 T C MYH4 Missense_Mutation p.E928G 0.20 deleterious(0.01) benign(0.371) TCGA-OR-A5KB-01 17 10363404 10363404 C G MYH4 Silent p.V427V 0.43 TCGA-OR-A5KB-01 17 10402002 10402002 C T MYH1 Silent p.Q1374Q 0.34 TCGA-OR-A5KB-01 17 10408289 10408289 G T MYH1 Silent p.L843L 0.33 TCGA-OR-A5KB-01 17 10428845 10428845 A T MYH2 Missense_Mutation p.L1487Q 0.18 deleterious(0) probably_damaging(0.967) TCGA-OR-A5KB-01 17 10535908 10535908 C A MYH3 Missense_Mutation p.R1614L 0.43 deleterious(0.01) benign(0.138) TCGA-OR-A5KB-01 17 11461111 11461111 C T SHISA6 Silent p.H382H 0.26 TCGA-OR-A5KB-01 17 11461624 11461624 G - SHISA6 3'UTR 0.39 TCGA-OR-A5KB-01 17 11592948 11592948 C A DNAH9 Missense_Mutation p.S1270Y 0.38 benign(0.308) TCGA-OR-A5KB-01 17 11725237 11725237 G C DNAH9 Missense_Mutation p.G2903A 0.29 benign(0.169) TCGA-OR-A5KB-01 17 11738038 11738038 C A DNAH9 Silent p.V3110V 0.17 TCGA-OR-A5KB-01 17 11772530 11772530 C A DNAH9 Missense_Mutation p.A3338D 0.12 probably_damaging(0.996) TCGA-OR-A5KB-01 17 12656026 12656026 C A MYOCD Missense_Mutation p.T474N 0.22 deleterious(0.01) possibly_damaging(0.812) TCGA-OR-A5KB-01 17 13504387 13504387 G T HS3ST3A1 Missense_Mutation p.S20R 0.24 tolerated_low_confidence(0.67) benign(0.001) TCGA-OR-A5KB-01 17 13972850 13972850 G T COX10 5'UTR 0.25 TCGA-OR-A5KB-01 17 15638662 15638662 G A TBC1D26 Intron 0.24 TCGA-OR-A5KB-01 17 15643707 15643707 G C TBC1D26 Intron 0.27 TCGA-OR-A5KB-01 17 15643708 15643708 G T TBC1D26 Intron 0.27 TCGA-OR-A5KB-01 17 17415964 17415964 T C PEMT Missense_Mutation p.T109A 0.41 tolerated(0.09) benign(0.012) TCGA-OR-A5KB-01 17 17701546 17701546 G C RAI1 Missense_Mutation p.D1762H 0.20 deleterious(0) probably_damaging(0.94) TCGA-OR-A5KB-01 17 18148680 18148680 C G FLII Silent p.L1221L 0.45 TCGA-OR-A5KB-01 17 18429896 18429896 C A FAM106A Silent p.L74L 0.62 TCGA-OR-A5KB-01 17 20224817 20224817 A G AC004702.2 Intron 0.13 TCGA-OR-A5KB-01 17 20239156 20239156 A T RN7SL17P 5'Flank 0.14 TCGA-OR-A5KB-01 17 21201734 21201734 A G MAP2K3 Missense_Mutation p.K20R 0.14 tolerated(0.32) benign(0.165) TCGA-OR-A5KB-01 17 21319147 21319147 C G KCNJ12 Missense_Mutation p.Q165E 0.15 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 17 21319212 21319212 G C KCNJ12 Missense_Mutation p.R186S 0.08 deleterious(0) probably_damaging(0.96) TCGA-OR-A5KB-01 17 21319910 21319910 G T KCNJ12 Missense_Mutation p.G419V 0.08 tolerated_low_confidence(0.41) benign(0.013) TCGA-OR-A5KB-01 17 21321136 21321137 CC - KCNJ12 3'UTR 0.14 TCGA-OR-A5KB-01 17 21825404 21825404 G T FAM27L RNA 0.21 TCGA-OR-A5KB-01 17 21826156 21826156 G T FAM27L RNA 0.42 TCGA-OR-A5KB-01 17 25748788 25748788 A G TBC1D3P5 RNA 0.09 TCGA-OR-A5KB-01 17 25749210 25749210 G T TBC1D3P5 RNA 0.20 TCGA-OR-A5KB-01 17 27383223 27383223 G A PIPOX Missense_Mutation p.G358E 0.37 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 17 27383224 27383224 G A PIPOX Silent p.G358G 0.36 TCGA-OR-A5KB-01 17 27901828 27901830 GGC - GIT1 In_Frame_Del p.A735del 0.19 TCGA-OR-A5KB-01 17 28407846 28407846 C T EFCAB5 Silent p.N1091N 0.21 TCGA-OR-A5KB-01 17 28748840 28748840 A T CPD Silent p.V432V 0.26 TCGA-OR-A5KB-01 17 29120477 29120477 C G CRLF3 Missense_Mutation p.V273L 0.41 tolerated(0.28) probably_damaging(0.99) TCGA-OR-A5KB-01 17 3101229 3101229 G T OR1A2 Silent p.R139R 0.20 TCGA-OR-A5KB-01 17 31322454 31322454 C A SPACA3 Missense_Mutation p.P21H 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-OR-A5KB-01 17 31618866 31618866 C A ASIC2 Missense_Mutation p.V90L 0.30 tolerated(0.33) benign(0.004) TCGA-OR-A5KB-01 17 33498375 33498375 C A UNC45B Missense_Mutation p.T577N 0.47 deleterious(0.03) benign(0.013) TCGA-OR-A5KB-01 17 33504573 33504573 G T UNC45B Missense_Mutation p.Q735H 0.57 deleterious(0) possibly_damaging(0.832) TCGA-OR-A5KB-01 17 33520493 33520493 G A SLC35G3 Silent p.H278H 0.20 TCGA-OR-A5KB-01 17 33592239 33592239 C T SLFN5 Nonsense_Mutation p.Q670* 0.16 TCGA-OR-A5KB-01 17 33768243 33768243 G C SLFN13 Missense_Mutation p.Q689E 0.19 tolerated(0.06) benign(0.124) TCGA-OR-A5KB-01 17 34539740 34539740 G C CCL4L1 Intron 0.28 TCGA-OR-A5KB-01 17 34539823 34539823 T A CCL4L1 Intron 0.47 TCGA-OR-A5KB-01 17 3470249 3470249 C A SHPK Missense_Mutation p.V794F 0.40 deleterious(0) possibly_damaging(0.797) TCGA-OR-A5KB-01 17 3494464 3494464 C A TRPV1 Intron 0.20 TCGA-OR-A5KB-01 17 3628702 3628702 G T GSG2 Silent p.G491G 0.18 TCGA-OR-A5KB-01 17 3655152 3655152 A G ITGAE Missense_Mutation p.L562S 0.24 tolerated(0.16) benign(0.139) TCGA-OR-A5KB-01 17 37818535 37818535 C T STARD3 Missense_Mutation p.L391F 0.31 tolerated(0.09) benign(0.069) TCGA-OR-A5KB-01 17 38179422 38179422 T C MED24 Missense_Mutation p.M738V 0.48 tolerated(0.82) benign(0.42) TCGA-OR-A5KB-01 17 38430251 38430251 G T WIPF2 Missense_Mutation p.D394Y 0.20 deleterious(0) possibly_damaging(0.879) TCGA-OR-A5KB-01 17 39041305 39041305 G A KRT20 Missense_Mutation p.R45C 0.17 tolerated(0.07) benign(0.167) TCGA-OR-A5KB-01 17 39394402 39394402 C G KRTAP9-8 Missense_Mutation p.C33W 0.19 deleterious(0) unknown(0) TCGA-OR-A5KB-01 17 39412430 39412430 T A KRTAP9-9 3'UTR 0.21 TCGA-OR-A5KB-01 17 3955316 3955316 T A ZZEF1 Missense_Mutation p.D1850V 0.20 deleterious(0) benign(0.367) TCGA-OR-A5KB-01 17 3959640 3959640 C A ZZEF1 Splice_Site p.X1722_splice 0.18 TCGA-OR-A5KB-01 17 39645883 39645883 C A KRT36 Silent p.V78V 0.29 TCGA-OR-A5KB-01 17 3973982 3973982 T A ZZEF1 Missense_Mutation p.K1357N 0.47 tolerated(0.15) benign(0.015) TCGA-OR-A5KB-01 17 39742633 39742633 G C KRT14 Missense_Mutation p.Q152E 0.22 tolerated(0.61) benign(0.05) TCGA-OR-A5KB-01 17 39766464 39766464 G A KRT16 Silent p.G435G 0.20 TCGA-OR-A5KB-01 17 39964251 39964251 C T LEPREL4 Missense_Mutation p.D308N 0.18 tolerated(0.05) probably_damaging(0.994) TCGA-OR-A5KB-01 17 40054039 40054039 C A ACLY Silent p.V464V 0.48 TCGA-OR-A5KB-01 17 40344460 40344460 C T GHDC Missense_Mutation p.G230R 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 17 42156160 42156160 C A HDAC5 Intron 0.08 TCGA-OR-A5KB-01 17 42452028 42452028 T A ITGA2B Missense_Mutation p.Q981L 0.19 tolerated(0.42) benign(0.001) TCGA-OR-A5KB-01 17 42847371 42847371 C G ADAM11 Nonsense_Mutation p.Y112* 0.16 TCGA-OR-A5KB-01 17 42930702 42930703 - TC EFTUD2 Frame_Shift_Ins p.D841Efs*18 0.29 TCGA-OR-A5KB-01 17 4351540 4351540 G T SPNS3 Missense_Mutation p.G238W 0.45 deleterious(0.03) possibly_damaging(0.838) TCGA-OR-A5KB-01 17 44117207 44117207 C A KANSL1 Missense_Mutation p.Q688H 0.21 tolerated(0.52) benign(0.061) TCGA-OR-A5KB-01 17 4453405 4453406 CC A MYBBP1A Frame_Shift_Del p.L422Ffs*27 0.21 TCGA-OR-A5KB-01 17 44846126 44846126 C A WNT3 Missense_Mutation p.G210W 0.18 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 17 45894628 45894628 T A OSBPL7 Silent p.T232T 0.52 TCGA-OR-A5KB-01 17 47121377 47121377 G T IGF2BP1 Missense_Mutation p.V417L 0.50 deleterious(0.04) possibly_damaging(0.706) TCGA-OR-A5KB-01 17 48068892 48068892 C A DLX3 Missense_Mutation p.A285S 0.33 deleterious(0.02) possibly_damaging(0.739) TCGA-OR-A5KB-01 17 48154781 48154781 G T ITGA3 Missense_Mutation p.E703D 0.18 tolerated(0.23) benign(0.03) TCGA-OR-A5KB-01 17 48246526 48246526 G T SGCA Missense_Mutation p.A220S 0.46 tolerated(0.42) possibly_damaging(0.454) TCGA-OR-A5KB-01 17 48677192 48677192 G A CACNA1G Missense_Mutation p.G1221E 0.41 tolerated(0.74) benign(0.027) TCGA-OR-A5KB-01 17 4926821 4926821 C A KIF1C Nonsense_Mutation p.S896* 0.21 TCGA-OR-A5KB-01 17 505108 505108 G A VPS53 Missense_Mutation p.T382I 0.27 tolerated(0.1) possibly_damaging(0.743) TCGA-OR-A5KB-01 17 51900753 51900753 C G KIF2B Missense_Mutation p.P120R 0.56 deleterious(0.03) probably_damaging(0.913) TCGA-OR-A5KB-01 17 51900846 51900846 G - KIF2B Frame_Shift_Del p.E152Kfs*39 0.32 TCGA-OR-A5KB-01 17 53014522 53014522 G T TOM1L1 Missense_Mutation p.S323I 0.48 deleterious(0.05) benign(0.005) TCGA-OR-A5KB-01 17 5436275 5436275 C A NLRP1 Nonsense_Mutation p.E1055* 0.38 TCGA-OR-A5KB-01 17 54671840 54671840 G T NOG Missense_Mutation p.D86Y 0.24 deleterious(0.01) possibly_damaging(0.723) TCGA-OR-A5KB-01 17 56326518 56326518 T C LPO Silent p.I141I 0.24 TCGA-OR-A5KB-01 17 56570286 56570286 C A MTMR4 Missense_Mutation p.D1080Y 0.15 tolerated(0.32) probably_damaging(0.95) TCGA-OR-A5KB-01 17 56570288 56570288 C A MTMR4 Missense_Mutation p.S1079I 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5KB-01 17 56598641 56598641 C G SEPT4 Missense_Mutation p.R378P 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 17 56676889 56676889 T A TEX14 Missense_Mutation p.E612V 0.48 tolerated(0.19) probably_damaging(0.974) TCGA-OR-A5KB-01 17 58137396 58137396 G C HEATR6 Missense_Mutation p.S493C 0.14 deleterious(0.02) benign(0.037) TCGA-OR-A5KB-01 17 59561079 59561079 G A TBX4 3'UTR 0.28 TCGA-OR-A5KB-01 17 59668146 59668146 A T NACA2 Silent p.S132S 0.64 TCGA-OR-A5KB-01 17 60484029 60484029 T A EFCAB3 Missense_Mutation p.L278H 0.35 deleterious(0) probably_damaging(0.973) TCGA-OR-A5KB-01 17 61958131 61958131 C A GH2 Missense_Mutation p.V153L 0.19 tolerated(0.12) benign(0.287) TCGA-OR-A5KB-01 17 67094069 67094069 C A ABCA6 Missense_Mutation p.D1038Y 0.40 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KB-01 17 67285343 67285343 C A ABCA5 Missense_Mutation p.G626V 0.41 deleterious(0) probably_damaging(0.969) TCGA-OR-A5KB-01 17 67285344 67285344 C G ABCA5 Missense_Mutation p.G626R 0.41 deleterious(0) probably_damaging(0.991) TCGA-OR-A5KB-01 17 68130600 68130600 T A KCNJ16 3'UTR 0.44 TCGA-OR-A5KB-01 17 68171793 68171793 G T KCNJ2 Missense_Mutation p.D205Y 0.49 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 17 71334923 71334923 C A SDK2 Missense_Mutation p.G2108C 0.23 deleterious(0) probably_damaging(0.935) TCGA-OR-A5KB-01 17 72368353 72368353 G T GPR142 Missense_Mutation p.A335S 0.40 tolerated(0.37) possibly_damaging(0.886) TCGA-OR-A5KB-01 17 72522169 72522169 C A CD300LB Missense_Mutation p.G67W 0.51 deleterious(0) probably_damaging(0.974) TCGA-OR-A5KB-01 17 72613500 72613500 A G CD300E Missense_Mutation p.W49R 0.45 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 17 72725483 72725483 C T RAB37 Missense_Mutation p.A54V 0.20 deleterious(0.02) probably_damaging(0.944) TCGA-OR-A5KB-01 17 72875688 72875688 C A FADS6 Missense_Mutation p.R251L 0.25 tolerated(0.9) benign(0.005) TCGA-OR-A5KB-01 17 72926856 72926856 G C OTOP2 Missense_Mutation p.A376P 0.23 deleterious(0) probably_damaging(0.973) TCGA-OR-A5KB-01 17 73096274 73096274 C T SLC16A5 Silent p.F172F 0.44 TCGA-OR-A5KB-01 17 73871533 73871533 G C TRIM47 Silent p.L408L 0.35 TCGA-OR-A5KB-01 17 74392628 74392628 C A UBE2O Missense_Mutation p.G797V 0.32 deleterious(0.04) benign(0.014) TCGA-OR-A5KB-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.41 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 17 77079099 77079099 C T ENGASE Intron 0.24 TCGA-OR-A5KB-01 17 77111616 77111616 T A RBFOX3 Missense_Mutation p.E61V 0.25 tolerated_low_confidence(0.05) benign(0.004) TCGA-OR-A5KB-01 17 77111617 77111617 C A RBFOX3 Nonsense_Mutation p.E61* 0.25 TCGA-OR-A5KB-01 17 78091491 78091491 G T GAA Silent p.P808P 0.23 TCGA-OR-A5KB-01 17 79428055 79428055 C T RP11-1055B8.7 Silent p.L2122L 0.26 TCGA-OR-A5KB-01 17 80393626 80393626 C T HEXDC Missense_Mutation p.T170M 0.39 tolerated(0.06) benign(0.154) TCGA-OR-A5KB-01 17 8053364 8053364 C G PER1 Missense_Mutation p.E152Q 0.28 deleterious(0.02) possibly_damaging(0.808) TCGA-OR-A5KB-01 17 80710006 80710006 C T TBCD 5'UTR 0.18 TCGA-OR-A5KB-01 17 8110524 8110524 C T AURKB Missense_Mutation p.R123H 0.27 deleterious(0) probably_damaging(0.982) TCGA-OR-A5KB-01 17 8741937 8741937 G T PIK3R6 Silent p.R45R 0.39 TCGA-OR-A5KB-01 17 9631601 9631601 G T USP43 Missense_Mutation p.G889V 0.43 tolerated(0.13) benign(0.018) TCGA-OR-A5KB-01 17 9792935 9792935 C A GLP2R Silent p.P525P 0.43 TCGA-OR-A5KB-01 18 11852166 11852166 G T CHMP1B 3'UTR 0.36 TCGA-OR-A5KB-01 18 12277152 12277152 C A CIDEA Silent p.A181A 0.47 TCGA-OR-A5KB-01 18 12817252 12817252 C A PTPN2 Missense_Mutation p.G203V 0.46 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 18 13884593 13884593 C T MC2R 3'UTR 0.16 TCGA-OR-A5KB-01 18 14533178 14533178 C T POTEC Missense_Mutation p.V313I 0.41 tolerated(0.16) probably_damaging(0.935) TCGA-OR-A5KB-01 18 14748439 14748439 C A ANKRD30B Silent p.A7A 0.27 TCGA-OR-A5KB-01 18 14787090 14787090 G T ANKRD30B Missense_Mutation p.W575C 0.41 tolerated(0.06) probably_damaging(0.977) TCGA-OR-A5KB-01 18 14851981 14851981 G A ANKRD30B Silent p.E1227E 0.23 TCGA-OR-A5KB-01 18 18975392 18975392 G A GREB1L Missense_Mutation p.M134I 0.34 tolerated(0.06) benign(0.075) TCGA-OR-A5KB-01 18 21646036 21646036 A G TTC39C Missense_Mutation p.T93A 0.50 deleterious(0.02) possibly_damaging(0.838) TCGA-OR-A5KB-01 18 23615884 23615884 T C SS18 Missense_Mutation p.H295R 0.34 deleterious(0.02) benign(0.057) TCGA-OR-A5KB-01 18 25565561 25565561 G T CDH2 Missense_Mutation p.P636T 0.20 deleterious(0) benign(0.167) TCGA-OR-A5KB-01 18 25593747 25593747 G T CDH2 Missense_Mutation p.A100D 0.23 tolerated(0.45) benign(0.175) TCGA-OR-A5KB-01 18 28906904 28906904 G T DSG1 Missense_Mutation p.W51L 0.45 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 18 29049291 29049291 C T DSG3 Missense_Mutation p.L626F 0.41 deleterious(0.03) benign(0.263) TCGA-OR-A5KB-01 18 29648363 29648363 G T RNF125 3'UTR 0.40 TCGA-OR-A5KB-01 18 30092265 30092265 G T WBP11P1 RNA 0.17 TCGA-OR-A5KB-01 18 30093005 30093005 C A WBP11P1 RNA 0.41 TCGA-OR-A5KB-01 18 30093161 30093161 G A WBP11P1 RNA 0.38 TCGA-OR-A5KB-01 18 30350407 30350407 C T KLHL14 Missense_Mutation p.V50M 0.31 tolerated(0.43) probably_damaging(0.991) TCGA-OR-A5KB-01 18 3067394 3067394 C A MYOM1 Missense_Mutation p.G1642C 0.24 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 18 31323338 31323338 C A ASXL3 Silent p.R1176R 0.57 TCGA-OR-A5KB-01 18 31325189 31325189 G C ASXL3 Missense_Mutation p.E1793Q 0.15 benign(0.022) TCGA-OR-A5KB-01 18 321761 321761 G T COLEC12 Missense_Mutation p.P704T 0.51 tolerated(0.23) unknown(0) TCGA-OR-A5KB-01 18 32431876 32431876 C A DTNA Missense_Mutation p.L419I 0.46 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 18 32889587 32889587 G T ZNF271 RNA 0.44 TCGA-OR-A5KB-01 18 34297943 34297943 G T FHOD3 Missense_Mutation p.R719S 0.18 tolerated(0.29) benign(0.069) TCGA-OR-A5KB-01 18 34646889 34646889 G C KIAA1328 Missense_Mutation p.V205L 0.21 tolerated(1) benign(0.001) TCGA-OR-A5KB-01 18 34853088 34853088 C G CELF4 Silent p.A280A 0.47 TCGA-OR-A5KB-01 18 39567811 39567811 A G PIK3C3 Silent p.K189K 0.55 TCGA-OR-A5KB-01 18 43207111 43207111 A T SLC14A2 Missense_Mutation p.R174W 0.17 deleterious(0) possibly_damaging(0.768) TCGA-OR-A5KB-01 18 43219733 43219733 G T SLC14A2 Missense_Mutation p.G289V 0.23 deleterious(0) possibly_damaging(0.865) TCGA-OR-A5KB-01 18 43458387 43458387 T C EPG5 Missense_Mutation p.I1966V 0.21 tolerated(0.97) benign(0.001) TCGA-OR-A5KB-01 18 44104755 44104755 G T LOXHD1 Missense_Mutation p.N441K 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-OR-A5KB-01 18 44559277 44559277 G A TCEB3B 3'UTR 0.45 TCGA-OR-A5KB-01 18 44561326 44561326 G A TCEB3B Nonsense_Mutation p.Q104* 0.55 TCGA-OR-A5KB-01 18 48458690 48458690 C G ME2 Silent p.V459V 0.15 TCGA-OR-A5KB-01 18 50278479 50278479 C G DCC Silent p.A49A 0.16 TCGA-OR-A5KB-01 18 50985607 50985607 G C DCC Missense_Mutation p.R1133P 0.36 deleterious(0) probably_damaging(0.956) TCGA-OR-A5KB-01 18 5145576 5145576 C G C18orf42 Missense_Mutation p.K65N 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5KB-01 18 52265445 52265445 A G DYNAP 3'UTR 0.30 TCGA-OR-A5KB-01 18 59221763 59221763 G T CDH20 Silent p.T747T 0.44 TCGA-OR-A5KB-01 18 60036089 60036089 A G TNFRSF11A Silent p.V313V 0.26 TCGA-OR-A5KB-01 18 61460444 61460444 C A SERPINB7 Missense_Mutation p.S90Y 0.23 deleterious(0.03) probably_damaging(0.914) TCGA-OR-A5KB-01 18 61653590 61653590 T C SERPINB8 Intron 0.44 TCGA-OR-A5KB-01 18 61654266 61654266 C A SERPINB8 Missense_Mutation p.D293E 0.43 tolerated(0.64) benign(0.025) TCGA-OR-A5KB-01 18 627305 627305 A G CLUL1 Missense_Mutation p.Q211R 0.44 deleterious(0.03) possibly_damaging(0.77) TCGA-OR-A5KB-01 18 63476945 63476945 C G CDH7 Missense_Mutation p.H72Q 0.41 deleterious(0.05) probably_damaging(0.981) TCGA-OR-A5KB-01 18 63511216 63511216 A T CDH7 Missense_Mutation p.M384L 0.27 tolerated(0.48) benign(0.015) TCGA-OR-A5KB-01 18 63530266 63530266 G T CDH7 Intron 0.50 TCGA-OR-A5KB-01 18 64239377 64239377 G T CDH19 Missense_Mutation p.A22E 0.15 tolerated(0.63) benign(0.367) TCGA-OR-A5KB-01 18 65179129 65179129 C A DSEL Missense_Mutation p.W916L 0.43 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 18 66564598 66564598 G T CCDC102B Missense_Mutation p.R399I 0.14 deleterious(0) benign(0.38) TCGA-OR-A5KB-01 18 66721282 66721282 A T CCDC102B Missense_Mutation p.N484Y 0.21 deleterious(0) possibly_damaging(0.804) TCGA-OR-A5KB-01 18 6986199 6986199 C G LAMA1 Missense_Mutation p.E1772D 0.32 tolerated(0.45) benign(0.012) TCGA-OR-A5KB-01 18 70526196 70526196 G T NETO1 Missense_Mutation p.P112T 0.40 tolerated(0.16) probably_damaging(0.962) TCGA-OR-A5KB-01 18 72775251 72775251 G T ZNF407 Silent p.P1858P 0.24 TCGA-OR-A5KB-01 18 77475469 77475469 G T CTDP1 Missense_Mutation p.R670L 0.39 deleterious(0.02) benign(0.258) TCGA-OR-A5KB-01 18 9258888 9258888 C G ANKRD12 Missense_Mutation p.L1875V 0.27 deleterious(0.05) probably_damaging(0.975) TCGA-OR-A5KB-01 19 10097029 10097029 C A COL5A3 Missense_Mutation p.A772S 0.75 unknown(0) TCGA-OR-A5KB-01 19 10106750 10106750 C A COL5A3 Missense_Mutation p.G509W 0.57 unknown(0) TCGA-OR-A5KB-01 19 10476223 10476223 C T TYK2 Nonsense_Mutation p.W327* 0.44 TCGA-OR-A5KB-01 19 11150201 11150201 G A SMARCA4 Intron 0.58 TCGA-OR-A5KB-01 19 1220443 1220443 C G STK11 Missense_Mutation p.P179R 0.59 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 19 13565966 13565966 C A CACNA1A Missense_Mutation p.E118D 0.60 benign(0.388) TCGA-OR-A5KB-01 19 15083539 15083539 T A SLC1A6 Missense_Mutation p.T62S 0.45 tolerated(0.37) probably_damaging(0.983) TCGA-OR-A5KB-01 19 15586650 15586650 C G PGLYRP2 Silent p.L277L 0.22 TCGA-OR-A5KB-01 19 15752302 15752302 G A CYP4F3 Missense_Mutation p.G26E 0.57 deleterious(0.03) probably_damaging(0.938) TCGA-OR-A5KB-01 19 16973222 16973222 T A SIN3B Missense_Mutation p.F373Y 0.50 tolerated(1) benign(0.065) TCGA-OR-A5KB-01 19 17303667 17303667 A T MYO9B Missense_Mutation p.H975L 0.58 deleterious(0.02) benign(0.371) TCGA-OR-A5KB-01 19 17643172 17643172 G T FAM129C Missense_Mutation p.R127L 0.59 tolerated(0.16) benign(0.169) TCGA-OR-A5KB-01 19 20228898 20228898 G T ZNF90 Missense_Mutation p.G179C 0.40 deleterious(0.02) probably_damaging(1) TCGA-OR-A5KB-01 19 21950368 21950368 C A ZNF100 5'UTR 0.67 TCGA-OR-A5KB-01 19 2271846 2271846 G T OAZ1 Missense_Mutation p.Q119H 0.63 tolerated(0.43) possibly_damaging(0.833) TCGA-OR-A5KB-01 19 23844980 23844980 G A ZNF675 Silent p.T54T 0.45 TCGA-OR-A5KB-01 19 2757762 2757762 C A SGTA Silent p.S252S 0.64 TCGA-OR-A5KB-01 19 31767667 31767667 G C TSHZ3 Missense_Mutation p.T1011S 0.57 tolerated(0.48) benign(0) TCGA-OR-A5KB-01 19 31768123 31768123 G T TSHZ3 Missense_Mutation p.T859K 0.57 deleterious(0) benign(0.131) TCGA-OR-A5KB-01 19 31769009 31769009 G C TSHZ3 Missense_Mutation p.L564V 0.44 deleterious(0.04) benign(0.377) TCGA-OR-A5KB-01 19 31769010 31769010 G T TSHZ3 Silent p.S563S 0.44 TCGA-OR-A5KB-01 19 3449047 3449047 A T NFIC Nonsense_Mutation p.K332* 0.62 TCGA-OR-A5KB-01 19 35260460 35260460 C A ZNF599 Missense_Mutation p.A7S 0.62 tolerated(0.29) benign(0.061) TCGA-OR-A5KB-01 19 35786525 35786525 G T MAG Missense_Mutation p.G19V 0.56 deleterious(0.05) benign(0.438) TCGA-OR-A5KB-01 19 36395087 36395087 C T HCST 3'UTR 0.58 TCGA-OR-A5KB-01 19 36643388 36643388 C T COX7A1 5'UTR 0.53 TCGA-OR-A5KB-01 19 36884174 36884174 A G ZFP82 Silent p.H356H 0.62 TCGA-OR-A5KB-01 19 37100830 37100830 G T ZNF382 Missense_Mutation p.G5V 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 19 38572624 38572624 G A SIPA1L3 Missense_Mutation p.R140Q 0.26 tolerated(0.12) possibly_damaging(0.556) TCGA-OR-A5KB-01 19 38954426 38954426 G T RYR1 Missense_Mutation p.D908Y 0.61 probably_damaging(0.979) TCGA-OR-A5KB-01 19 39103252 39103252 T G MAP4K1 Silent p.R222R 0.59 TCGA-OR-A5KB-01 19 39589631 39589631 C A PAPL Missense_Mutation p.S118R 0.56 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 19 39959793 39959793 G T SUPT5H Missense_Mutation p.E406D 0.60 tolerated(0.14) benign(0.028) TCGA-OR-A5KB-01 19 40929113 40929113 G A SERTAD1 Missense_Mutation p.S114F 0.11 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 19 43244604 43244604 G A PSG3 5'UTR 0.50 TCGA-OR-A5KB-01 19 43766262 43766262 G T PSG9 Missense_Mutation p.S153R 0.40 deleterious(0.01) probably_damaging(0.972) TCGA-OR-A5KB-01 19 45801154 45801154 G T MARK4 Missense_Mutation p.G607W 0.64 deleterious(0) benign(0.275) TCGA-OR-A5KB-01 19 46094390 46094390 C T GPR4 Silent p.L245L 0.55 TCGA-OR-A5KB-01 19 47156013 47156013 A T DACT3 Missense_Mutation p.C135S 0.59 tolerated(0.38) probably_damaging(0.943) TCGA-OR-A5KB-01 19 47920493 47920493 G C MEIS3 Missense_Mutation p.P43A 0.58 tolerated(0.25) benign(0.007) TCGA-OR-A5KB-01 19 47951225 47951225 C T SLC8A2 Missense_Mutation p.S535N 0.56 tolerated(0.13) benign(0.009) TCGA-OR-A5KB-01 19 49994074 49994074 C G RPL13A Missense_Mutation p.L99V 0.62 deleterious(0) benign(0.347) TCGA-OR-A5KB-01 19 50209636 50209636 G A CPT1C Missense_Mutation p.A437T 0.57 deleterious(0) probably_damaging(0.921) TCGA-OR-A5KB-01 19 50404912 50404912 G T IL4I1 Silent p.P21P 0.67 TCGA-OR-A5KB-01 19 51480918 51480918 T A KLK7 Missense_Mutation p.R212S 0.57 tolerated(0.13) benign(0.088) TCGA-OR-A5KB-01 19 51958781 51958781 C A SIGLEC8 Missense_Mutation p.E314D 0.61 tolerated(0.07) probably_damaging(0.993) TCGA-OR-A5KB-01 19 51961365 51961365 G C SIGLEC8 Missense_Mutation p.Q93E 0.60 deleterious(0.03) benign(0.033) TCGA-OR-A5KB-01 19 52272299 52272299 C G FPR2 Missense_Mutation p.P130A 0.62 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 19 5239001 5239001 C A PTPRS Missense_Mutation p.R593L 0.57 tolerated(0.12) benign(0.014) TCGA-OR-A5KB-01 19 52954557 52954557 C A ZNF578 5'Flank 0.52 TCGA-OR-A5KB-01 19 54215536 54215536 C A MIR517A RNA 0.61 TCGA-OR-A5KB-01 19 54866769 54866769 G C LAIR1 3'UTR 0.63 TCGA-OR-A5KB-01 19 54930366 54930366 T C TTYH1 Missense_Mutation p.V64A 0.67 tolerated(0.3) benign(0.009) TCGA-OR-A5KB-01 19 55054908 55054908 G A KIR3DX1 3'UTR 0.59 TCGA-OR-A5KB-01 19 55179574 55179574 C A LILRB4 3'UTR 0.53 TCGA-OR-A5KB-01 19 55451819 55451819 C A NLRP7 Missense_Mutation p.W123L 0.64 tolerated(0.34) benign(0.001) TCGA-OR-A5KB-01 19 55481494 55481494 C A NLRP2 Missense_Mutation p.H37Q 0.56 tolerated(0.29) benign(0.048) TCGA-OR-A5KB-01 19 56369475 56369475 G C NLRP4 Missense_Mutation p.G239A 0.58 tolerated(0.07) benign(0.006) TCGA-OR-A5KB-01 19 56466259 56466259 G T NLRP8 Missense_Mutation p.D279Y 0.61 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5KB-01 19 56466706 56466706 G T NLRP8 Missense_Mutation p.V428F 0.54 deleterious(0.02) probably_damaging(0.932) TCGA-OR-A5KB-01 19 56539330 56539330 G C NLRP5 Missense_Mutation p.E577D 0.56 tolerated(0.08) benign(0.034) TCGA-OR-A5KB-01 19 56539331 56539331 G T NLRP5 Nonsense_Mutation p.E578* 0.55 TCGA-OR-A5KB-01 19 56569695 56569695 T A NLRP5 Missense_Mutation p.V1130E 0.58 deleterious(0.03) possibly_damaging(0.68) TCGA-OR-A5KB-01 19 57324972 57324972 G T PEG3 3'UTR 0.61 TCGA-OR-A5KB-01 19 57325099 57325099 G C PEG3 Missense_Mutation p.Q1571E 0.54 tolerated(0.07) probably_damaging(0.928) TCGA-OR-A5KB-01 19 57334984 57334984 G T PEG3 Missense_Mutation p.P153Q 0.55 deleterious(0.01) probably_damaging(0.927) TCGA-OR-A5KB-01 19 57672059 57672059 G T DUXA Silent p.T44T 0.52 TCGA-OR-A5KB-01 19 57746327 57746327 G - AURKC Frame_Shift_Del p.D221Ifs*34 0.33 TCGA-OR-A5KB-01 19 57932542 57932542 G T ZNF17 Missense_Mutation p.R561I 0.66 deleterious(0) possibly_damaging(0.637) TCGA-OR-A5KB-01 19 58117486 58117486 G C ZNF530 Missense_Mutation p.R198T 0.65 tolerated(0.42) benign(0.004) TCGA-OR-A5KB-01 19 58152335 58152335 G A ZNF211 Missense_Mutation p.A226T 0.59 tolerated(0.09) benign(0.164) TCGA-OR-A5KB-01 19 58199642 58199642 G A ZNF551 Missense_Mutation p.E667K 0.46 tolerated(0.12) benign(0.073) TCGA-OR-A5KB-01 19 58864353 58864353 C T A1BG Missense_Mutation p.R94H 0.28 deleterious(0.03) possibly_damaging(0.756) TCGA-OR-A5KB-01 19 6416662 6416662 C A KHSRP Splice_Site p.X443_splice 0.55 TCGA-OR-A5KB-01 19 6853959 6853959 G - VAV1 Frame_Shift_Del p.G779Efs*? 0.42 TCGA-OR-A5KB-01 19 9060203 9060203 G T MUC16 Silent p.T9081T 0.61 TCGA-OR-A5KB-01 19 9062539 9062539 C A MUC16 Missense_Mutation p.G8303C 0.59 unknown(0) TCGA-OR-A5KB-01 19 9070334 9070334 A T MUC16 Silent p.T5704T 0.54 TCGA-OR-A5KB-01 19 9297991 9297991 C A OR7D2 3'UTR 0.58 TCGA-OR-A5KB-01 1 100588833 100588833 G A SASS6 Missense_Mutation p.R47C 0.44 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 1 100606445 100606445 T G TRMT13 Missense_Mutation p.L180R 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 100964629 100964629 G T CDC14A Missense_Mutation p.Q522H 0.23 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-OR-A5KB-01 1 101706165 101706165 C G S1PR1 3'UTR 0.21 TCGA-OR-A5KB-01 1 103345394 103345394 G T COL11A1 Silent p.R1707R 0.55 TCGA-OR-A5KB-01 1 103363705 103363705 G T COL11A1 Silent p.G1426G 0.48 TCGA-OR-A5KB-01 1 108023431 108023431 T A NTNG1 Missense_Mutation p.L530Q 0.36 deleterious(0.01) unknown(0) TCGA-OR-A5KB-01 1 108138963 108138963 C A VAV3 Nonsense_Mutation p.E741* 0.17 TCGA-OR-A5KB-01 1 108417589 108417589 C A VAV3 Silent p.T85T 0.17 TCGA-OR-A5KB-01 1 108766242 108766242 C G NBPF4 3'UTR 0.45 TCGA-OR-A5KB-01 1 109242505 109242505 A G PRPF38B Missense_Mutation p.R502G 0.27 tolerated_low_confidence(0.17) unknown(0) TCGA-OR-A5KB-01 1 110050171 110050171 C - AMIGO1 Frame_Shift_Del p.G455Afs*124 0.20 TCGA-OR-A5KB-01 1 110085990 110085990 C T GPR61 Missense_Mutation p.R116C 0.50 deleterious(0) probably_damaging(0.973) TCGA-OR-A5KB-01 1 110148630 110148630 T A GNAT2 Missense_Mutation p.S228C 0.21 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 1 110766353 110766353 C A KCNC4 Silent p.A482A 0.18 TCGA-OR-A5KB-01 1 1117120 1117120 G A TTLL10 Splice_Site p.X252_splice 0.25 TCGA-OR-A5KB-01 1 113266683 113266683 C A FAM19A3 Silent p.R128R 0.47 TCGA-OR-A5KB-01 1 116206308 116206308 G T VANGL1 Silent p.T77T 0.28 TCGA-OR-A5KB-01 1 120165428 120165428 C A ZNF697 Missense_Mutation p.R513L 0.47 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 1 120436583 120436583 C A ADAM30 3'UTR 0.30 TCGA-OR-A5KB-01 1 120839673 120839673 C T FAM72B 5'UTR 0.12 TCGA-OR-A5KB-01 1 12339596 12339596 G A VPS13D Silent p.L1497L 0.27 TCGA-OR-A5KB-01 1 12476832 12476832 G T VPS13D Silent p.G4095G 0.25 TCGA-OR-A5KB-01 1 12854331 12854331 G C PRAMEF1 Silent p.L185L 0.53 TCGA-OR-A5KB-01 1 12887562 12887562 G T PRAMEF11 Missense_Mutation p.P99T 0.27 tolerated(0.09) probably_damaging(0.969) TCGA-OR-A5KB-01 1 12918933 12918933 G C PRAMEF2 Missense_Mutation p.L23F 0.60 deleterious(0.01) probably_damaging(0.983) TCGA-OR-A5KB-01 1 12954838 12954838 C A PRAMEF10 Missense_Mutation p.V149L 0.52 deleterious(0.03) benign(0.437) TCGA-OR-A5KB-01 1 1334033 1334033 G A CCNL2 Nonsense_Mutation p.Q103* 0.51 TCGA-OR-A5KB-01 1 144852481 144852481 G T PDE4DIP Intron 0.35 TCGA-OR-A5KB-01 1 144854656 144854656 C A PDE4DIP Nonsense_Mutation p.G2272* 0.14 TCGA-OR-A5KB-01 1 144865885 144865885 G C PDE4DIP Missense_Mutation p.Q1899E 0.07 deleterious(0) benign(0.412) TCGA-OR-A5KB-01 1 145290493 145290493 C G NBPF10 5'Flank 0.03 TCGA-OR-A5KB-01 1 145533058 145533058 G A ITGA10 Missense_Mutation p.G385R 0.33 deleterious(0.03) probably_damaging(1) TCGA-OR-A5KB-01 1 145533059 145533059 G T ITGA10 Missense_Mutation p.G385V 0.32 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 147380254 147380254 C T GJA8 Nonsense_Mutation p.Q58* 0.28 TCGA-OR-A5KB-01 1 151236481 151236481 T C PSMD4 Missense_Mutation p.C87R 0.27 tolerated(0.06) benign(0.356) TCGA-OR-A5KB-01 1 151377850 151377850 G C POGZ Missense_Mutation p.R1221G 0.17 tolerated(0.57) benign(0.134) TCGA-OR-A5KB-01 1 151402135 151402135 C G POGZ Missense_Mutation p.G171A 0.20 deleterious(0.03) possibly_damaging(0.9) TCGA-OR-A5KB-01 1 152129433 152129433 G A RPTN Missense_Mutation p.P48S 0.26 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 1 152188311 152188311 G A HRNR Nonsense_Mutation p.Q1932* 0.09 TCGA-OR-A5KB-01 1 152276700 152276700 C A FLG Missense_Mutation p.R3554S 0.11 unknown(0) TCGA-OR-A5KB-01 1 152280069 152280069 G T FLG Silent p.T2431T 0.52 TCGA-OR-A5KB-01 1 152283067 152283067 C A FLG Missense_Mutation p.G1432V 0.26 probably_damaging(0.953) TCGA-OR-A5KB-01 1 152323875 152323875 G T FLG2 Silent p.A2129A 0.42 TCGA-OR-A5KB-01 1 152326364 152326364 A T FLG2 Missense_Mutation p.Y1300N 0.25 benign(0.001) TCGA-OR-A5KB-01 1 152326656 152326656 G T FLG2 Silent p.S1202S 0.45 TCGA-OR-A5KB-01 1 152327048 152327048 G T FLG2 Missense_Mutation p.R1072S 0.39 unknown(0) TCGA-OR-A5KB-01 1 152328724 152328724 C T FLG2 Missense_Mutation p.G513E 0.10 unknown(0) TCGA-OR-A5KB-01 1 152328752 152328752 C A FLG2 Missense_Mutation p.G504C 0.08 unknown(0) TCGA-OR-A5KB-01 1 152329711 152329711 G A FLG2 Missense_Mutation p.S184F 0.22 unknown(0) TCGA-OR-A5KB-01 1 152382013 152382013 C A CRNN 3'UTR 0.43 TCGA-OR-A5KB-01 1 152692887 152692887 A C C1orf68 3'UTR 0.44 TCGA-OR-A5KB-01 1 153012806 153012806 T A SPRR2D Missense_Mutation p.Q6L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5KB-01 1 153303417 153303417 T C PGLYRP4 Missense_Mutation p.I316M 0.09 deleterious(0.02) benign(0.051) TCGA-OR-A5KB-01 1 153333441 153333441 G A S100A9 3'UTR 0.10 TCGA-OR-A5KB-01 1 153643439 153643439 C G ILF2 5'UTR 0.28 TCGA-OR-A5KB-01 1 155217919 155217919 C A FAM189B Silent p.R585R 0.50 TCGA-OR-A5KB-01 1 156046986 156046986 A T MEX3A Missense_Mutation p.D314E 0.11 tolerated(0.92) benign(0.001) TCGA-OR-A5KB-01 1 156255405 156255405 G T TMEM79 Missense_Mutation p.V130L 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-OR-A5KB-01 1 156316635 156316635 C T TSACC Silent p.A80A 0.28 TCGA-OR-A5KB-01 1 156779504 156779504 T C SH2D2A Silent p.K231K 0.27 TCGA-OR-A5KB-01 1 157559043 157559043 C T FCRL4 Silent p.Q86Q 0.51 TCGA-OR-A5KB-01 1 157804410 157804410 G T CD5L Missense_Mutation p.L169I 0.25 deleterious(0.04) probably_damaging(0.942) TCGA-OR-A5KB-01 1 157811492 157811492 G T CD5L 5'UTR 0.23 TCGA-OR-A5KB-01 1 158325660 158325660 T A CD1E Silent p.P223P 0.26 TCGA-OR-A5KB-01 1 158368349 158368349 C A OR10T2 Missense_Mutation p.R303I 0.10 deleterious(0) benign(0.406) TCGA-OR-A5KB-01 1 158369178 158369178 G T OR10T2 Missense_Mutation p.L27M 0.59 tolerated(0.11) probably_damaging(0.965) TCGA-OR-A5KB-01 1 158390612 158390612 G C OR10K2 Silent p.L15L 0.27 TCGA-OR-A5KB-01 1 158435408 158435408 C G OR10K1 Silent p.S19S 0.25 TCGA-OR-A5KB-01 1 158549352 158549353 - A OR10X1 Frame_Shift_Ins p.C113Lfs*2 0.09 TCGA-OR-A5KB-01 1 158582604 158582604 G T SPTA1 Intron 0.49 TCGA-OR-A5KB-01 1 158589090 158589090 C A SPTA1 Missense_Mutation p.R2151I 0.10 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 1 158590083 158590083 G T SPTA1 Missense_Mutation p.D2098E 0.14 tolerated(0.08) benign(0.094) TCGA-OR-A5KB-01 1 158592778 158592778 G C SPTA1 Missense_Mutation p.Q2039E 0.22 deleterious(0.05) benign(0.004) TCGA-OR-A5KB-01 1 158606464 158606464 C A SPTA1 Missense_Mutation p.E1759D 0.26 tolerated(0.13) benign(0.012) TCGA-OR-A5KB-01 1 158653268 158653268 G T SPTA1 Missense_Mutation p.Q95K 0.38 tolerated(0.12) benign(0.001) TCGA-OR-A5KB-01 1 158670301 158670301 C A OR6K2 Missense_Mutation p.V48L 0.31 tolerated(0.13) benign(0.015) TCGA-OR-A5KB-01 1 158735697 158735697 T C OR6N1 Missense_Mutation p.Y259C 0.46 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 158747067 158747067 T A OR6N2 Missense_Mutation p.Y120F 0.13 tolerated(0.47) probably_damaging(0.998) TCGA-OR-A5KB-01 1 159141616 159141616 C A CADM3 Missense_Mutation p.P21T 0.16 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-OR-A5KB-01 1 159175764 159175764 C T DARC Silent p.L181L 0.19 TCGA-OR-A5KB-01 1 159273889 159273889 C - FCER1A Frame_Shift_Del p.K84Nfs*39 0.33 TCGA-OR-A5KB-01 1 159558001 159558001 T C APCS Missense_Mutation p.Y59H 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-OR-A5KB-01 1 159558536 159558536 C T APCS 3'UTR 0.20 TCGA-OR-A5KB-01 1 159683244 159683244 C A CRP 3'UTR 0.09 TCGA-OR-A5KB-01 1 159752244 159752244 G A DUSP23 3'UTR 0.15 TCGA-OR-A5KB-01 1 159779392 159779392 C G FCRL6 Missense_Mutation p.Q269E 0.26 deleterious(0.03) possibly_damaging(0.676) TCGA-OR-A5KB-01 1 159922196 159922196 C - SLAMF9 Frame_Shift_Del p.D174Ifs*75 0.18 TCGA-OR-A5KB-01 1 160063008 160063008 C A IGSF8 Missense_Mutation p.A340S 0.12 tolerated(0.06) benign(0.176) TCGA-OR-A5KB-01 1 160124894 160124894 C T ATP1A4 Silent p.T89T 0.14 TCGA-OR-A5KB-01 1 160147208 160147208 C A ATP1A4 Intron 0.67 TCGA-OR-A5KB-01 1 160156622 160156622 G A ATP1A4 3'UTR 0.29 TCGA-OR-A5KB-01 1 160342186 160342186 G T NHLH1 3'UTR 0.46 TCGA-OR-A5KB-01 1 160970019 160970019 C A F11R Missense_Mutation p.G170W 0.38 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 1 160990972 160990972 C A F11R 5'UTR 0.33 TCGA-OR-A5KB-01 1 161496045 161496045 G T HSPA6 Missense_Mutation p.A533S 0.37 tolerated_low_confidence(0.19) benign(0.005) TCGA-OR-A5KB-01 1 161519625 161519625 C A FCGR3A Missense_Mutation p.G4W 0.56 tolerated_low_confidence(0.23) benign(0) TCGA-OR-A5KB-01 1 161967901 161967901 T A OLFML2B Missense_Mutation p.Q396H 0.16 tolerated(0.36) benign(0.001) TCGA-OR-A5KB-01 1 161987209 161987209 C A OLFML2B Missense_Mutation p.R176L 0.29 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 1 161989832 161989832 C A OLFML2B Silent p.V105V 0.58 TCGA-OR-A5KB-01 1 162313643 162313643 G T NOS1AP Missense_Mutation p.V158F 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 162345173 162345173 G C C1orf111 Missense_Mutation p.P42A 0.08 tolerated(0.19) possibly_damaging(0.535) TCGA-OR-A5KB-01 1 162762484 162762484 C T HSD17B7 Missense_Mutation p.A24V 0.11 tolerated(0.15) benign(0.015) TCGA-OR-A5KB-01 1 162766425 162766425 C T HSD17B7 Missense_Mutation p.P97L 0.12 deleterious(0.01) possibly_damaging(0.793) TCGA-OR-A5KB-01 1 165322434 165322434 G A LMX1A Silent p.L48L 0.40 TCGA-OR-A5KB-01 1 165513609 165513609 T G LRRC52 Missense_Mutation p.C26G 0.31 deleterious(0) probably_damaging(0.956) TCGA-OR-A5KB-01 1 166039894 166039894 G T FAM78B Missense_Mutation p.L124M 0.14 tolerated(0.05) benign(0.049) TCGA-OR-A5KB-01 1 166816741 166816741 C A POGK Missense_Mutation p.F90L 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-OR-A5KB-01 1 166891891 166891891 C A ILDR2 Missense_Mutation p.A384S 0.48 tolerated(0.71) benign(0.003) TCGA-OR-A5KB-01 1 167086597 167086597 G T DUSP27 Nonsense_Mutation p.E80* 0.56 TCGA-OR-A5KB-01 1 167096341 167096341 C A DUSP27 Missense_Mutation p.P658H 0.16 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 167096491 167096491 C A DUSP27 Missense_Mutation p.P708H 0.44 deleterious(0) probably_damaging(0.936) TCGA-OR-A5KB-01 1 167659302 167659302 C A RCSD1 Missense_Mutation p.A72E 0.12 deleterious(0) probably_damaging(0.94) TCGA-OR-A5KB-01 1 168550362 168550362 C A XCL1 Missense_Mutation p.S83R 0.36 tolerated(0.24) benign(0.062) TCGA-OR-A5KB-01 1 169454883 169454883 C A SLC19A2 Missense_Mutation p.G41V 0.57 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 170015874 170015874 G A KIFAP3 Missense_Mutation p.R100C 0.20 deleterious(0) possibly_damaging(0.873) TCGA-OR-A5KB-01 1 170633519 170633519 G C PRRX1 Missense_Mutation p.D54H 0.12 tolerated(0.08) benign(0.401) TCGA-OR-A5KB-01 1 173010422 173010422 C A TNFSF18 3'UTR 0.47 TCGA-OR-A5KB-01 1 17313430 17313430 T C ATP13A2 Silent p.T1035T 0.47 TCGA-OR-A5KB-01 1 174517198 174517198 G A RABGAP1L Intron 0.12 TCGA-OR-A5KB-01 1 1747196 1747196 T G GNB1 Silent p.R68R 0.51 TCGA-OR-A5KB-01 1 175046899 175046899 G T TNN Silent p.L115L 0.29 TCGA-OR-A5KB-01 1 175086185 175086185 T A TNN Missense_Mutation p.S744T 0.13 deleterious(0.01) probably_damaging(0.964) TCGA-OR-A5KB-01 1 175092664 175092664 A T TNN Missense_Mutation p.R927W 0.23 deleterious(0) possibly_damaging(0.895) TCGA-OR-A5KB-01 1 175116153 175116153 G T TNN Missense_Mutation p.E1282D 0.30 tolerated(0.12) benign(0.011) TCGA-OR-A5KB-01 1 175348815 175348815 G T TNR Silent p.L612L 0.50 TCGA-OR-A5KB-01 1 175362928 175362928 G T TNR Missense_Mutation p.S448R 0.31 tolerated(0.38) probably_damaging(1) TCGA-OR-A5KB-01 1 175372387 175372387 C A TNR Missense_Mutation p.G289C 0.38 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 1 17594329 17594329 C T PADI3 Intron 0.18 TCGA-OR-A5KB-01 1 176526124 176526124 G T PAPPA2 Missense_Mutation p.W222C 0.29 tolerated(0.1) possibly_damaging(0.533) TCGA-OR-A5KB-01 1 176564188 176564188 G T PAPPA2 Missense_Mutation p.G483V 0.40 tolerated(0.12) benign(0.035) TCGA-OR-A5KB-01 1 176769205 176769205 G T PAPPA2 Silent p.V1713V 0.09 TCGA-OR-A5KB-01 1 176845691 176845691 C A ASTN1 Missense_Mutation p.D1149Y 0.51 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 1 176863813 176863813 G T ASTN1 Missense_Mutation p.S942Y 0.29 tolerated(0.06) benign(0.006) TCGA-OR-A5KB-01 1 17690360 17690360 C A PADI4 3'UTR 0.50 TCGA-OR-A5KB-01 1 178490628 178490628 G T TEX35 Intron 0.30 TCGA-OR-A5KB-01 1 179620086 179620086 G A TDRD5 Missense_Mutation p.D629N 0.26 tolerated(0.44) benign(0.283) TCGA-OR-A5KB-01 1 180240552 180240552 C A LHX4 Silent p.T163T 0.24 TCGA-OR-A5KB-01 1 181702776 181702776 C A CACNA1E Missense_Mutation p.P1051H 0.26 deleterious(0.01) possibly_damaging(0.893) TCGA-OR-A5KB-01 1 181767816 181767816 C A CACNA1E Missense_Mutation p.S2263Y 0.09 deleterious(0) benign(0.133) TCGA-OR-A5KB-01 1 181767817 181767817 C A CACNA1E Silent p.S2263S 0.09 TCGA-OR-A5KB-01 1 182027141 182027141 G T ZNF648 Missense_Mutation p.A2E 0.35 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-OR-A5KB-01 1 182499425 182499425 C A RGSL1 Silent p.S724S 0.35 TCGA-OR-A5KB-01 1 182499426 182499426 A T RGSL1 Missense_Mutation p.M725L 0.34 tolerated(0.3) benign(0.026) TCGA-OR-A5KB-01 1 182500036 182500037 GG A RGSL1 Frame_Shift_Del p.E786Nfs*8 0.37 TCGA-OR-A5KB-01 1 183195953 183195953 G T LAMC2 Missense_Mutation p.C396F 0.08 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 183907852 183907852 C A COLGALT2 3'UTR 0.47 TCGA-OR-A5KB-01 1 185112534 185112534 C T TRMT1L Missense_Mutation p.E272K 0.14 tolerated(0.42) benign(0.02) TCGA-OR-A5KB-01 1 186880385 186880385 G T PLA2G4A Missense_Mutation p.C141F 0.34 tolerated(0.07) benign(0.001) TCGA-OR-A5KB-01 1 190067549 190067550 TG A BRINP3 Frame_Shift_Del p.K634Sfs*28 0.34 TCGA-OR-A5KB-01 1 19018406 19018406 G T PAX7 Nonsense_Mutation p.E249* 0.23 TCGA-OR-A5KB-01 1 19209099 19209099 T A ALDH4A1 Intron 0.54 TCGA-OR-A5KB-01 1 192127869 192127869 C A RGS18 Missense_Mutation p.S34R 0.38 tolerated(0.25) benign(0.007) TCGA-OR-A5KB-01 1 192127877 192127877 C A RGS18 Missense_Mutation p.A37D 0.23 tolerated(0.34) benign(0.004) TCGA-OR-A5KB-01 1 192153625 192153625 C A RGS18 Missense_Mutation p.R217S 0.37 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 1 192548286 192548286 C A RGS1 Missense_Mutation p.T155N 0.26 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 1 196749007 196749007 G C CFHR3 Missense_Mutation p.V112L 0.49 tolerated(0.28) benign(0.357) TCGA-OR-A5KB-01 1 196920020 196920020 G C CFHR2 Missense_Mutation p.E98Q 0.09 tolerated(0.52) possibly_damaging(0.741) TCGA-OR-A5KB-01 1 196964954 196964954 C G CFHR5 Missense_Mutation p.P239A 0.49 deleterious(0.01) possibly_damaging(0.487) TCGA-OR-A5KB-01 1 197059995 197059995 T A ASPM Silent p.G3207G 0.36 TCGA-OR-A5KB-01 1 197113117 197113117 T A ASPM Silent p.L137L 0.34 TCGA-OR-A5KB-01 1 200943940 200943940 C A KIF21B Missense_Mutation p.W1572C 0.25 deleterious(0) possibly_damaging(0.89) TCGA-OR-A5KB-01 1 200971454 200971454 C A KIF21B Missense_Mutation p.G413C 0.28 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 1 201009798 201009798 C A CACNA1S Silent p.L1726L 0.34 TCGA-OR-A5KB-01 1 201009799 201009799 A G CACNA1S Missense_Mutation p.L1726P 0.34 tolerated_low_confidence(0.18) benign(0.05) TCGA-OR-A5KB-01 1 201047167 201047167 C A CACNA1S Missense_Mutation p.G487C 0.54 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 201181975 201181975 G T IGFN1 Missense_Mutation p.G2652C 0.57 possibly_damaging(0.897) TCGA-OR-A5KB-01 1 202715062 202715062 C A KDM5B Missense_Mutation p.K749N 0.29 deleterious(0) possibly_damaging(0.889) TCGA-OR-A5KB-01 1 202915739 202915739 C A ADIPOR1 Splice_Site p.X87_splice 0.20 TCGA-OR-A5KB-01 1 203028334 203028334 G T PPFIA4 Missense_Mutation p.M306I 0.37 tolerated(0.44) benign(0) TCGA-OR-A5KB-01 1 203276418 203276418 C T BTG2 Missense_Mutation p.S110F 0.27 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 203452438 203452438 C A PRELP Silent p.P42P 0.44 TCGA-OR-A5KB-01 1 203452762 203452762 C T PRELP Silent p.P150P 0.34 TCGA-OR-A5KB-01 1 203652258 203652258 G T ATP2B4 5'UTR 0.29 TCGA-OR-A5KB-01 1 203743202 203743202 C A LAX1 Missense_Mutation p.P197H 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5KB-01 1 203807096 203807096 G T ZC3H11A Missense_Mutation p.G293C 0.48 deleterious(0.02) benign(0.078) TCGA-OR-A5KB-01 1 20416346 20416346 C T PLA2G5 Nonsense_Mutation p.Q84* 0.27 TCGA-OR-A5KB-01 1 204589128 204589128 C A LRRN2 5'UTR 0.25 TCGA-OR-A5KB-01 1 204937426 204937426 C A NFASC Silent p.T252T 0.43 TCGA-OR-A5KB-01 1 204966446 204966446 C A NFASC Silent p.V977V 0.36 TCGA-OR-A5KB-01 1 205039030 205039030 T A CNTN2 Missense_Mutation p.W758R 0.12 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 20669628 20669628 C A VWA5B1 Missense_Mutation p.P790T 0.26 tolerated(0.66) benign(0.003) TCGA-OR-A5KB-01 1 20680294 20680294 C A VWA5B1 Silent p.A1067A 0.44 TCGA-OR-A5KB-01 1 206905890 206905890 G T MAPKAPK2 Intron 0.14 TCGA-OR-A5KB-01 1 207087142 207087142 C A FAIM3 Missense_Mutation p.R112L 0.37 tolerated(0.11) benign(0.097) TCGA-OR-A5KB-01 1 207139094 207139094 C A FCAMR Silent p.S93S 0.35 TCGA-OR-A5KB-01 1 207649601 207649601 G A CR2 Silent p.P913P 0.15 TCGA-OR-A5KB-01 1 207753724 207753724 C A CR1 Silent p.P1692P 0.25 TCGA-OR-A5KB-01 1 208202235 208202235 G C PLXNA2 Missense_Mutation p.S1793C 0.12 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 1 209795997 209795997 T C LAMB3 Missense_Mutation p.Q862R 0.30 tolerated(0.26) benign(0.005) TCGA-OR-A5KB-01 1 209796407 209796407 C A LAMB3 Missense_Mutation p.G826C 0.49 deleterious(0.01) possibly_damaging(0.758) TCGA-OR-A5KB-01 1 209936416 209936416 C A TRAF3IP3 Nonsense_Mutation p.Y185* 0.39 TCGA-OR-A5KB-01 1 209936707 209936707 G A TRAF3IP3 Splice_Site p.X193_splice 0.30 TCGA-OR-A5KB-01 1 209964145 209964145 A G IRF6 Missense_Mutation p.F252S 0.28 tolerated(0.21) possibly_damaging(0.81) TCGA-OR-A5KB-01 1 210857441 210857441 C G KCNH1 Missense_Mutation p.E718Q 0.17 deleterious(0) possibly_damaging(0.764) TCGA-OR-A5KB-01 1 210971060 210971060 C A KCNH1 Missense_Mutation p.V569L 0.51 tolerated(0.26) benign(0.111) TCGA-OR-A5KB-01 1 211264025 211264025 A T KCNH1 Silent p.P106P 0.57 TCGA-OR-A5KB-01 1 212141280 212141280 T C INTS7 Missense_Mutation p.Y685C 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 212190255 212190255 G C INTS7 Missense_Mutation p.A161G 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-OR-A5KB-01 1 212965246 212965246 G T TATDN3 5'UTR 0.15 TCGA-OR-A5KB-01 1 215408289 215408289 T A KCNK2 Missense_Mutation p.I361N 0.41 deleterious(0) possibly_damaging(0.583) TCGA-OR-A5KB-01 1 215822060 215822060 A G USH2A Missense_Mutation p.F4798L 0.51 possibly_damaging(0.52) TCGA-OR-A5KB-01 1 215953376 215953376 G T USH2A Missense_Mutation p.A3583E 0.13 probably_damaging(0.973) TCGA-OR-A5KB-01 1 215963428 215963428 G T USH2A Missense_Mutation p.D3385E 0.22 probably_damaging(0.983) TCGA-OR-A5KB-01 1 216052284 216052284 C A USH2A Missense_Mutation p.V2794F 0.50 possibly_damaging(0.885) TCGA-OR-A5KB-01 1 216144042 216144042 G T USH2A Nonsense_Mutation p.Y2294* 0.15 TCGA-OR-A5KB-01 1 216390770 216390770 G T USH2A Missense_Mutation p.A1039E 0.30 probably_damaging(0.978) TCGA-OR-A5KB-01 1 216498841 216498841 G T USH2A Silent p.R317R 0.44 TCGA-OR-A5KB-01 1 218607682 218607682 A C TGFB2 Silent p.R244R 0.13 TCGA-OR-A5KB-01 1 220152840 220152840 T G EPRS Missense_Mutation p.T1277P 0.56 deleterious(0) probably_damaging(0.983) TCGA-OR-A5KB-01 1 220178699 220178699 C A EPRS Nonsense_Mutation p.E652* 0.39 TCGA-OR-A5KB-01 1 220247364 220247364 C T BPNT1 Missense_Mutation p.S57N 0.19 deleterious(0.02) benign(0.331) TCGA-OR-A5KB-01 1 22138814 22138814 G A LDLRAD2 5'UTR 0.65 TCGA-OR-A5KB-01 1 22179236 22179236 T A HSPG2 Silent p.L2227L 0.26 TCGA-OR-A5KB-01 1 222705308 222705308 C T HHIPL2 Missense_Mutation p.G575R 0.33 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 225267153 225267153 G T DNAH14 Missense_Mutation p.S824I 0.16 tolerated(0.42) benign(0.027) TCGA-OR-A5KB-01 1 226496928 226496928 C G LIN9 5'UTR 0.15 TCGA-OR-A5KB-01 1 227261686 227261686 C G CDC42BPA Missense_Mutation p.A872P 0.29 deleterious(0.02) possibly_damaging(0.792) TCGA-OR-A5KB-01 1 228004947 228004947 C A PRSS38 Missense_Mutation p.L117I 0.57 tolerated(0.39) benign(0.379) TCGA-OR-A5KB-01 1 228005027 228005027 G C PRSS38 Missense_Mutation p.M143I 0.24 tolerated(0.17) benign(0.033) TCGA-OR-A5KB-01 1 228465520 228465520 G A OBSCN Missense_Mutation p.A2703T 0.22 probably_damaging(0.949) TCGA-OR-A5KB-01 1 228469788 228469788 G T OBSCN Missense_Mutation p.Q3213H 0.60 benign(0.022) TCGA-OR-A5KB-01 1 228487844 228487844 G A OBSCN Missense_Mutation p.R4579K 0.18 benign(0.064) TCGA-OR-A5KB-01 1 228496916 228496916 G T OBSCN Nonsense_Mutation p.G5243* 0.27 TCGA-OR-A5KB-01 1 230468646 230468646 C T PGBD5 Nonsense_Mutation p.W337* 0.50 TCGA-OR-A5KB-01 1 231349591 231349591 C A TRIM67 Silent p.T718T 0.52 TCGA-OR-A5KB-01 1 231885794 231885794 G C DISC1 Missense_Mutation p.A414P 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-OR-A5KB-01 1 235357437 235357437 T G ARID4B Silent p.T672T 0.46 TCGA-OR-A5KB-01 1 235506579 235506579 G T GGPS1 3'UTR 0.25 TCGA-OR-A5KB-01 1 235904873 235904873 C G LYST Missense_Mutation p.C2736S 0.22 tolerated(0.21) probably_damaging(0.985) TCGA-OR-A5KB-01 1 235966313 235966313 C G LYST Missense_Mutation p.E1203Q 0.11 tolerated(0.06) benign(0.38) TCGA-OR-A5KB-01 1 235972428 235972428 C A LYST Missense_Mutation p.A564S 0.52 tolerated(0.19) benign(0.211) TCGA-OR-A5KB-01 1 235973763 235973763 G C LYST Missense_Mutation p.Q119E 0.31 tolerated_low_confidence(0.11) probably_damaging(0.953) TCGA-OR-A5KB-01 1 236157101 236157101 G C NID1 Missense_Mutation p.R867G 0.47 tolerated(0.42) benign(0.015) TCGA-OR-A5KB-01 1 236902766 236902766 G C ACTN2 Silent p.T347T 0.51 TCGA-OR-A5KB-01 1 236902815 236902815 G C ACTN2 Missense_Mutation p.E364Q 0.29 tolerated(0.11) possibly_damaging(0.476) TCGA-OR-A5KB-01 1 237664056 237664056 G T RYR2 Missense_Mutation p.R750I 0.25 possibly_damaging(0.908) TCGA-OR-A5KB-01 1 237666655 237666655 T A RYR2 Silent p.P821P 0.52 TCGA-OR-A5KB-01 1 237811775 237811775 G T RYR2 Silent p.A2458A 0.12 TCGA-OR-A5KB-01 1 237870480 237870480 A T RYR2 Missense_Mutation p.E3271V 0.26 benign(0.003) TCGA-OR-A5KB-01 1 237890397 237890397 C G RYR2 Missense_Mutation p.P3579R 0.43 probably_damaging(0.963) TCGA-OR-A5KB-01 1 237947789 237947789 C T RYR2 Silent p.L4259L 0.27 TCGA-OR-A5KB-01 1 237947964 237947964 C A RYR2 Missense_Mutation p.L4318I 0.50 probably_damaging(0.994) TCGA-OR-A5KB-01 1 237954769 237954769 C A RYR2 Missense_Mutation p.A4506D 0.27 probably_damaging(0.975) TCGA-OR-A5KB-01 1 237954770 237954770 C A RYR2 Silent p.A4506A 0.28 TCGA-OR-A5KB-01 1 238048794 238048794 G C ZP4 Missense_Mutation p.L353V 0.15 deleterious(0.02) possibly_damaging(0.708) TCGA-OR-A5KB-01 1 238049161 238049161 C A ZP4 Missense_Mutation p.V289L 0.15 tolerated(0.28) benign(0.029) TCGA-OR-A5KB-01 1 238090116 238090116 C A RP11-193H5.1 RNA 0.18 TCGA-OR-A5KB-01 1 238090899 238090899 C A RP11-193H5.1 RNA 0.67 TCGA-OR-A5KB-01 1 238090940 238090940 C A RP11-193H5.1 RNA 0.69 TCGA-OR-A5KB-01 1 240371788 240371788 C A FMN2 Missense_Mutation p.P1226T 0.34 benign(0.012) TCGA-OR-A5KB-01 1 241725612 241725612 A T KMO Missense_Mutation p.I199F 0.37 deleterious(0) probably_damaging(0.97) TCGA-OR-A5KB-01 1 241846794 241846794 T C WDR64 Silent p.N200N 0.21 TCGA-OR-A5KB-01 1 243349332 243349332 C A CEP170 Missense_Mutation p.G439W 0.40 deleterious(0) probably_damaging(0.95) TCGA-OR-A5KB-01 1 243354352 243354352 C A CEP170 Missense_Mutation p.S359I 0.22 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 1 2440355 2440355 C A PANK4 Silent p.A751A 0.47 TCGA-OR-A5KB-01 1 2445885 2445885 C G PANK4 Silent p.A465A 0.32 TCGA-OR-A5KB-01 1 245583020 245583020 C T KIF26B Missense_Mutation p.T380I 0.24 deleterious(0.04) unknown(0) TCGA-OR-A5KB-01 1 245766029 245766029 C G KIF26B Missense_Mutation p.Q501E 0.09 tolerated(0.5) unknown(0) TCGA-OR-A5KB-01 1 245849362 245849362 C A KIF26B Missense_Mutation p.P1026Q 0.42 tolerated(0.18) unknown(0) TCGA-OR-A5KB-01 1 245849536 245849536 C A KIF26B Missense_Mutation p.S1084Y 0.56 deleterious(0) unknown(0) TCGA-OR-A5KB-01 1 247611857 247611857 G A NLRP3 3'UTR 0.37 TCGA-OR-A5KB-01 1 247694914 247694914 G C OR2C3 Missense_Mutation p.S300R 0.30 tolerated(0.06) benign(0.001) TCGA-OR-A5KB-01 1 247769018 247769018 C A OR2G3 Missense_Mutation p.T44N 0.26 deleterious(0.01) benign(0.258) TCGA-OR-A5KB-01 1 247902627 247902627 C T OR14K1 Silent p.S237S 0.15 TCGA-OR-A5KB-01 1 248004443 248004443 G T OR11L1 Nonsense_Mutation p.Y252* 0.40 TCGA-OR-A5KB-01 1 248039228 248039228 G T TRIM58 Missense_Mutation p.A300S 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 248058877 248058877 G T OR2W3 5'UTR 0.49 TCGA-OR-A5KB-01 1 248112694 248112694 G T OR2L8 Missense_Mutation p.D179Y 0.21 deleterious(0) probably_damaging(0.962) TCGA-OR-A5KB-01 1 248113085 248113085 C A OR2L8 Missense_Mutation p.S309Y 0.57 tolerated(0.08) benign(0.379) TCGA-OR-A5KB-01 1 248201688 248201688 G T OR2L2 Missense_Mutation p.G40V 0.12 deleterious(0.01) possibly_damaging(0.762) TCGA-OR-A5KB-01 1 248224518 248224518 G T OR2L3 Missense_Mutation p.D179Y 0.06 deleterious(0) probably_damaging(0.928) TCGA-OR-A5KB-01 1 248263017 248263017 C A OR2L13 Missense_Mutation p.L114M 0.16 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 1 248263390 248263390 C - OR2L13 Frame_Shift_Del p.T239Pfs*6 0.33 TCGA-OR-A5KB-01 1 248308676 248308676 C A OR2M5 Missense_Mutation p.S76Y 0.12 deleterious(0) benign(0.139) TCGA-OR-A5KB-01 1 248343672 248343672 C G OR2M2 Missense_Mutation p.P129A 0.19 deleterious(0.01) possibly_damaging(0.589) TCGA-OR-A5KB-01 1 248366445 248366445 T A OR2M3 Missense_Mutation p.F26I 0.27 tolerated(0.1) possibly_damaging(0.899) TCGA-OR-A5KB-01 1 248366542 248366542 C G OR2M3 Missense_Mutation p.P58R 0.30 deleterious(0) probably_damaging(0.972) TCGA-OR-A5KB-01 1 248402254 248402254 C T OR2M4 Silent p.F8F 0.50 TCGA-OR-A5KB-01 1 248458292 248458292 T A OR2T12 Missense_Mutation p.M197L 0.12 tolerated(0.29) possibly_damaging(0.461) TCGA-OR-A5KB-01 1 248512583 248512583 C A OR14C36 Silent p.S169S 0.48 TCGA-OR-A5KB-01 1 248525752 248525752 C A OR2T4 Silent p.T290T 0.39 TCGA-OR-A5KB-01 1 248551108 248551108 T A OR2T6 Missense_Mutation p.S67T 0.54 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 1 248551631 248551631 G T OR2T6 Missense_Mutation p.C241F 0.25 deleterious(0) probably_damaging(0.958) TCGA-OR-A5KB-01 1 248756309 248756309 G A OR2T10 Missense_Mutation p.A254V 0.15 deleterious(0.02) benign(0.177) TCGA-OR-A5KB-01 1 248756494 248756494 G T OR2T10 Silent p.T192T 0.62 TCGA-OR-A5KB-01 1 248756527 248756527 G T OR2T10 Silent p.V181V 0.16 TCGA-OR-A5KB-01 1 248756878 248756878 G T OR2T10 Missense_Mutation p.N64K 0.54 deleterious(0) benign(0.065) TCGA-OR-A5KB-01 1 248790268 248790268 G T OR2T11 Silent p.T54T 0.49 TCGA-OR-A5KB-01 1 248790331 248790331 C A OR2T11 Missense_Mutation p.L33F 0.13 tolerated(0.25) benign(0.02) TCGA-OR-A5KB-01 1 26488747 26488747 C T FAM110D 3'UTR 0.51 TCGA-OR-A5KB-01 1 26509747 26509747 G T CNKSR1 Missense_Mutation p.Q228H 0.26 deleterious(0) probably_damaging(0.962) TCGA-OR-A5KB-01 1 27627876 27627876 G A WDTC1 Silent p.P463P 0.20 TCGA-OR-A5KB-01 1 29520573 29520573 C A MECR Missense_Mutation p.M361I 0.27 deleterious(0.05) benign(0.004) TCGA-OR-A5KB-01 1 29644272 29644272 G T PTPRU Missense_Mutation p.V1186F 0.31 deleterious(0) possibly_damaging(0.866) TCGA-OR-A5KB-01 1 31447604 31447604 C A PUM1 Missense_Mutation p.G467V 0.39 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 31538615 31538616 - G PUM1 5'Flank 0.40 TCGA-OR-A5KB-01 1 32374453 32374453 C T PTP4A2 Silent p.%3D 0.46 TCGA-OR-A5KB-01 1 32741016 32741016 G T LCK Nonsense_Mutation p.E125* 0.51 TCGA-OR-A5KB-01 1 3328612 3328612 G C PRDM16 Silent p.T617T 0.21 TCGA-OR-A5KB-01 1 34329806 34329806 T A HMGB4 Missense_Mutation p.I5N 0.22 tolerated(0.19) benign(0.107) TCGA-OR-A5KB-01 1 34662954 34662954 C A C1orf94 Missense_Mutation p.S150Y 0.20 deleterious(0.03) benign(0.215) TCGA-OR-A5KB-01 1 34663403 34663403 C A C1orf94 Missense_Mutation p.R300S 0.50 tolerated(0.63) benign(0.013) TCGA-OR-A5KB-01 1 3639930 3639930 C T TP73 Missense_Mutation p.P210L 0.21 deleterious(0) probably_damaging(0.938) TCGA-OR-A5KB-01 1 3669101 3669101 G - CCDC27 Frame_Shift_Del p.E20Kfs*190 0.32 TCGA-OR-A5KB-01 1 38078537 38078537 C T RSPO1 Missense_Mutation p.A228T 0.29 tolerated(0.52) benign(0.001) TCGA-OR-A5KB-01 1 39549943 39549943 G T MACF1 Missense_Mutation p.R18L 0.24 benign(0.013) TCGA-OR-A5KB-01 1 39818684 39818684 A T MACF1 Missense_Mutation p.K1673N 0.43 probably_damaging(0.979) TCGA-OR-A5KB-01 1 42045967 42045967 C A HIVEP3 Missense_Mutation p.S1501I 0.26 benign(0.221) TCGA-OR-A5KB-01 1 42047294 42047294 A G HIVEP3 Silent p.L1059L 0.18 TCGA-OR-A5KB-01 1 43818247 43818248 - C MPL Frame_Shift_Ins p.K573Qfs*40 0.18 TCGA-OR-A5KB-01 1 44063549 44063549 G A PTPRF Silent p.A648A 0.47 TCGA-OR-A5KB-01 1 44063550 44063550 G T PTPRF Missense_Mutation p.V649L 0.47 tolerated(1) benign(0.004) TCGA-OR-A5KB-01 1 45271742 45271742 G A TCTEX1D4 Missense_Mutation p.A200V 0.08 deleterious(0.02) benign(0.348) TCGA-OR-A5KB-01 1 50610817 50610817 C T ELAVL4 Silent p.F83F 0.41 TCGA-OR-A5KB-01 1 50659488 50659488 G T ELAVL4 Missense_Mutation p.V153F 0.24 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 1 52740214 52740214 G C ZFYVE9 Missense_Mutation p.D902H 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-OR-A5KB-01 1 6196856 6196856 G A CHD5 Silent p.L836L 0.23 TCGA-OR-A5KB-01 1 65830315 65830315 C T DNAJC6 Intron 0.33 TCGA-OR-A5KB-01 1 67306280 67306280 C T WDR78 Missense_Mutation p.E456K 0.26 tolerated(0.17) benign(0.147) TCGA-OR-A5KB-01 1 6761916 6761916 G T DNAJC11 5'UTR 0.62 TCGA-OR-A5KB-01 1 70385466 70385466 G A LRRC7 Intron 0.14 TCGA-OR-A5KB-01 1 70446116 70446116 G T LRRC7 Missense_Mutation p.A218S 0.37 tolerated(1) benign(0.002) TCGA-OR-A5KB-01 1 70504166 70504166 C A LRRC7 Missense_Mutation p.P849T 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OR-A5KB-01 1 70505345 70505345 G A LRRC7 Missense_Mutation p.D1242N 0.23 deleterious(0.04) possibly_damaging(0.772) TCGA-OR-A5KB-01 1 70701183 70701183 G A SRSF11 Splice_Site p.X181_splice 0.22 TCGA-OR-A5KB-01 1 71437384 71437384 G C PTGER3 Intron 0.46 TCGA-OR-A5KB-01 1 74507594 74507594 C A LRRIQ3 Missense_Mutation p.V341L 0.28 tolerated(0.22) benign(0.014) TCGA-OR-A5KB-01 1 75036793 75036793 C A C1orf173 3'UTR 0.13 TCGA-OR-A5KB-01 1 75622718 75622718 C A LHX8 Silent p.P317P 0.25 TCGA-OR-A5KB-01 1 76397853 76397853 A C ASB17 Missense_Mutation p.C42G 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.587) TCGA-OR-A5KB-01 1 76877898 76877898 C T ST6GALNAC3 Missense_Mutation p.P140L 0.44 possibly_damaging(0.755) TCGA-OR-A5KB-01 1 7723792 7723792 G T CAMTA1 Missense_Mutation p.Q395H 0.53 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-OR-A5KB-01 1 77759610 77759610 C A AK5 Missense_Mutation p.P127H 0.13 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 1 77987587 77987587 T A AK5 Missense_Mutation p.Y463N 0.49 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 1 7869982 7869982 C A PER3 Nonsense_Mutation p.Y423* 0.48 TCGA-OR-A5KB-01 1 79403806 79403806 G T ELTD1 Silent p.T185T 0.19 TCGA-OR-A5KB-01 1 82372734 82372734 G T LPHN2 Missense_Mutation p.V36L 0.51 tolerated(0.23) probably_damaging(0.997) TCGA-OR-A5KB-01 1 84649726 84649726 A T PRKACB Nonsense_Mutation p.K129* 0.44 TCGA-OR-A5KB-01 1 85279733 85279733 G T LPAR3 Silent p.S286S 0.22 TCGA-OR-A5KB-01 1 86841918 86841918 G C ODF2L Missense_Mutation p.Q270E 0.24 deleterious(0.01) possibly_damaging(0.508) TCGA-OR-A5KB-01 1 91406670 91406670 C A ZNF644 Missense_Mutation p.D81Y 0.41 deleterious(0) possibly_damaging(0.642) TCGA-OR-A5KB-01 1 91866610 91866610 A T HFM1 Silent p.S10S 0.53 TCGA-OR-A5KB-01 1 92182149 92182149 C A TGFBR3 Silent p.L561L 0.29 TCGA-OR-A5KB-01 1 92193214 92193214 A - TGFBR3 Splice_Site p.X295_splice 0.16 TCGA-OR-A5KB-01 1 92568096 92568096 G T BTBD8 Missense_Mutation p.M138I 0.46 tolerated(0.42) benign(0.012) TCGA-OR-A5KB-01 1 99164270 99164270 G A SNX7 Missense_Mutation p.D283N 0.23 tolerated(0.44) benign(0.027) TCGA-OR-A5KB-01 1 99764707 99764707 A T LPPR4 Missense_Mutation p.N219Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 1 99771539 99771539 C T LPPR4 Missense_Mutation p.T422I 0.28 deleterious(0) possibly_damaging(0.794) TCGA-OR-A5KB-01 1 99771739 99771739 G T LPPR4 Missense_Mutation p.G489W 0.23 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 1 99772033 99772033 G T LPPR4 Missense_Mutation p.G587C 0.27 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 1 99772258 99772258 G T LPPR4 Nonsense_Mutation p.E662* 0.49 TCGA-OR-A5KB-01 20 13752040 13752040 C T ESF1 Missense_Mutation p.S447N 0.19 tolerated(1) probably_damaging(0.986) TCGA-OR-A5KB-01 20 1457975 1457975 A T SIRPB2 Intron 0.38 TCGA-OR-A5KB-01 20 1600612 1600612 C A SIRPB1 5'UTR 0.33 TCGA-OR-A5KB-01 20 1610940 1610940 G C SIRPG Missense_Mutation p.S365C 0.29 deleterious(0.02) benign(0.002) TCGA-OR-A5KB-01 20 17617312 17617312 C A RRBP1 Silent p.V316V 0.26 TCGA-OR-A5KB-01 20 18434400 18434400 C A DZANK1 Missense_Mutation p.W150C 0.22 tolerated(0.09) benign(0.013) TCGA-OR-A5KB-01 20 18790706 18790706 T A C20orf78 Missense_Mutation p.E57V 0.29 tolerated_low_confidence(0.09) benign(0.002) TCGA-OR-A5KB-01 20 20501596 20501596 G A RALGAPA2 Missense_Mutation p.S1350L 0.26 deleterious(0) benign(0.007) TCGA-OR-A5KB-01 20 22563160 22563160 G A FOXA2 Silent p.T240T 0.54 TCGA-OR-A5KB-01 20 23065618 23065618 A G CD93 Silent p.D404D 0.44 TCGA-OR-A5KB-01 20 23472348 23472348 C T CST8 Missense_Mutation p.P15L 0.49 tolerated(0.7) benign(0) TCGA-OR-A5KB-01 20 23472361 23472361 G T CST8 Silent p.V19V 0.27 TCGA-OR-A5KB-01 20 23584212 23584212 A G CST9 Missense_Mutation p.C139R 0.21 tolerated_low_confidence(0.5) benign(0.265) TCGA-OR-A5KB-01 20 2398147 2398147 A G TGM6 Missense_Mutation p.I536V 0.26 tolerated(0.13) possibly_damaging(0.524) TCGA-OR-A5KB-01 20 2542507 2542507 A T TMC2 Silent p.S135S 0.21 TCGA-OR-A5KB-01 20 29976780 29976780 G T DEFB119 3'UTR 0.11 TCGA-OR-A5KB-01 20 30309465 30309465 C - BCL2L1 Frame_Shift_Del p.G186Afs*30 0.12 TCGA-OR-A5KB-01 20 31631832 31631832 G T BPIFB6 Missense_Mutation p.M447I 0.20 deleterious(0.02) benign(0.003) TCGA-OR-A5KB-01 20 31967333 31967333 G C CDK5RAP1 Silent p.V347V 0.15 TCGA-OR-A5KB-01 20 3218585 3218585 A T SLC4A11 Silent p.A42A 0.32 TCGA-OR-A5KB-01 20 33169461 33169461 G T PIGU Missense_Mutation p.F314L 0.06 tolerated(0.38) probably_damaging(0.987) TCGA-OR-A5KB-01 20 33508448 33508448 G T ACSS2 Missense_Mutation p.G373V 0.40 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 20 34090551 34090551 G T CEP250 Nonsense_Mutation p.E1452* 0.50 TCGA-OR-A5KB-01 20 34242103 34242103 T A RBM12 Missense_Mutation p.Q381L 0.19 deleterious(0.02) probably_damaging(0.971) TCGA-OR-A5KB-01 20 34535448 34535448 C T PHF20 Missense_Mutation p.P980S 0.45 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 20 34568458 34568458 C T CNBD2 Silent p.V107V 0.24 TCGA-OR-A5KB-01 20 3624815 3624815 C T ATRN Silent p.P1355P 0.30 TCGA-OR-A5KB-01 20 37531363 37531363 G A PPP1R16B Missense_Mutation p.M208I 0.42 deleterious(0) probably_damaging(0.989) TCGA-OR-A5KB-01 20 39316536 39316536 G C MAFB Missense_Mutation p.P319A 0.36 tolerated(0.18) benign(0.424) TCGA-OR-A5KB-01 20 40980823 40980823 C A PTPRT Missense_Mutation p.G555C 0.43 deleterious(0) probably_damaging(0.935) TCGA-OR-A5KB-01 20 42315672 42315672 G C MYBL2 Missense_Mutation p.G154R 0.46 deleterious(0) probably_damaging(0.966) TCGA-OR-A5KB-01 20 42683068 42683068 C T TOX2 Nonsense_Mutation p.Q261* 0.42 TCGA-OR-A5KB-01 20 43090572 43090572 C - C20orf62 Frame_Shift_Del p.D156Tfs*37 0.14 TCGA-OR-A5KB-01 20 43384921 43384921 C G RIMS4 Missense_Mutation p.E223Q 0.44 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-OR-A5KB-01 20 45130422 45130422 C A ZNF334 Missense_Mutation p.C519F 0.21 deleterious(0.03) benign(0.008) TCGA-OR-A5KB-01 20 45170432 45170432 G C OCSTAMP Silent p.A394A 0.37 TCGA-OR-A5KB-01 20 45174698 45174698 C A OCSTAMP Silent p.L105L 0.47 TCGA-OR-A5KB-01 20 45354555 45354555 G T SLC2A10 Missense_Mutation p.A294S 0.24 deleterious(0.03) possibly_damaging(0.849) TCGA-OR-A5KB-01 20 45700881 45700881 G T EYA2 Missense_Mutation p.S158I 0.18 tolerated(0.08) benign(0.203) TCGA-OR-A5KB-01 20 45771748 45771748 C A EYA2 Missense_Mutation p.F313L 0.48 deleterious(0.01) probably_damaging(0.976) TCGA-OR-A5KB-01 20 45976616 45976616 G C ZMYND8 Missense_Mutation p.I23M 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.564) TCGA-OR-A5KB-01 20 46311853 46311853 C A SULF2 Missense_Mutation p.D317Y 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 20 46385940 46385940 C A SULF2 Silent p.V56V 0.43 TCGA-OR-A5KB-01 20 47262418 47262418 G C PREX1 Missense_Mutation p.H1161Q 0.44 deleterious(0.01) benign(0.305) TCGA-OR-A5KB-01 20 47317415 47317415 G T PREX1 Missense_Mutation p.L265I 0.50 tolerated(0.47) probably_damaging(0.997) TCGA-OR-A5KB-01 20 48257052 48257052 T A B4GALT5 Missense_Mutation p.R253W 0.48 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 20 50408431 50408431 G T SALL4 Missense_Mutation p.S197R 0.17 deleterious(0.03) possibly_damaging(0.847) TCGA-OR-A5KB-01 20 5283022 5283022 C A PROKR2 Silent p.T273T 0.32 TCGA-OR-A5KB-01 20 55043662 55043662 G T RTFDC1 5'UTR 0.40 TCGA-OR-A5KB-01 20 56139391 56139391 G T PCK1 Silent p.P376P 0.20 TCGA-OR-A5KB-01 20 57428374 57428374 C - GNAS Frame_Shift_Del p.P20Lfs*670 0.32 TCGA-OR-A5KB-01 20 57430676 57430676 A T GNAS Intron 0.19 TCGA-OR-A5KB-01 20 57430678 57430678 G T GNAS Intron 0.19 TCGA-OR-A5KB-01 20 57610037 57610037 C G SLMO2 3'UTR 0.37 TCGA-OR-A5KB-01 20 57768917 57768917 C A ZNF831 Missense_Mutation p.A948E 0.49 tolerated(0.38) benign(0.002) TCGA-OR-A5KB-01 20 57769069 57769069 G T ZNF831 Missense_Mutation p.G999C 0.38 deleterious(0.01) possibly_damaging(0.862) TCGA-OR-A5KB-01 20 57769218 57769218 C A ZNF831 Silent p.P1048P 0.22 TCGA-OR-A5KB-01 20 57828115 57828115 C A ZNF831 Missense_Mutation p.D1370E 0.48 tolerated(0.56) benign(0.003) TCGA-OR-A5KB-01 20 57829495 57829495 T A ZNF831 Silent p.A1577A 0.41 TCGA-OR-A5KB-01 20 58349336 58349336 G T PHACTR3 Missense_Mutation p.R322L 0.21 tolerated(0.17) possibly_damaging(0.578) TCGA-OR-A5KB-01 20 58519072 58519072 A C FAM217B Missense_Mutation p.Q25P 0.19 deleterious(0.04) probably_damaging(0.926) TCGA-OR-A5KB-01 20 5903995 5903995 G T CHGB Missense_Mutation p.G402V 0.26 tolerated(0.06) possibly_damaging(0.499) TCGA-OR-A5KB-01 20 5904314 5904314 C A CHGB Silent p.S508S 0.15 TCGA-OR-A5KB-01 20 5904315 5904315 C A CHGB Missense_Mutation p.H509N 0.14 tolerated(0.16) possibly_damaging(0.499) TCGA-OR-A5KB-01 20 60448951 60448951 C A CDH4 Silent p.R349R 0.28 TCGA-OR-A5KB-01 20 60581714 60581714 G A TAF4 Missense_Mutation p.A692V 0.24 possibly_damaging(0.516) TCGA-OR-A5KB-01 20 60913072 60913072 C A LAMA5 Missense_Mutation p.A631S 0.50 probably_damaging(0.968) TCGA-OR-A5KB-01 20 61444261 61444261 G T OGFR Missense_Mutation p.G432C 0.26 deleterious(0) possibly_damaging(0.873) TCGA-OR-A5KB-01 20 61512594 61512594 C A DIDO1 Nonsense_Mutation p.E1572* 0.23 TCGA-OR-A5KB-01 20 61536878 61536878 G A DIDO1 Intron 0.18 TCGA-OR-A5KB-01 20 61834292 61834292 T C YTHDF1 Missense_Mutation p.R334G 0.29 deleterious(0.03) probably_damaging(0.971) TCGA-OR-A5KB-01 20 61869765 61869765 G T BIRC7 Missense_Mutation p.R156L 0.21 deleterious(0.03) benign(0.001) TCGA-OR-A5KB-01 20 61869820 61869820 G T BIRC7 Silent p.L174L 0.47 TCGA-OR-A5KB-01 20 61919061 61919061 G A ARFGAP1 Missense_Mutation p.D361N 0.24 tolerated(0.08) possibly_damaging(0.549) TCGA-OR-A5KB-01 20 7875859 7875859 C A HAO1 Missense_Mutation p.R245M 0.25 tolerated(0.09) benign(0.115) TCGA-OR-A5KB-01 20 8770166 8770166 G T PLCB1 Nonsense_Mutation p.E1094* 0.36 TCGA-OR-A5KB-01 20 9417684 9417684 A G PLCB4 Silent p.K871K 0.28 TCGA-OR-A5KB-01 20 9510300 9510300 C A LAMP5 Missense_Mutation p.P226T 0.12 tolerated(0.4) benign(0.039) TCGA-OR-A5KB-01 20 9510301 9510301 C A LAMP5 Missense_Mutation p.P226Q 0.10 tolerated(0.09) benign(0.031) TCGA-OR-A5KB-01 20 9510496 9510496 T A LAMP5 3'UTR 0.17 TCGA-OR-A5KB-01 20 9543657 9543657 C A PAK7 Silent p.R499R 0.31 TCGA-OR-A5KB-01 21 10906887 10906887 G T TPTE 3'UTR 0.29 TCGA-OR-A5KB-01 21 10920084 10920084 C A TPTE Missense_Mutation p.Q390H 0.29 deleterious(0) possibly_damaging(0.623) TCGA-OR-A5KB-01 21 10944670 10944670 G T TPTE Silent p.P188P 0.09 TCGA-OR-A5KB-01 21 11039090 11039090 T A BAGE2 RNA 0.07 TCGA-OR-A5KB-01 21 11039167 11039167 G A BAGE2 RNA 0.05 TCGA-OR-A5KB-01 21 11039265 11039265 G C BAGE2 RNA 0.05 TCGA-OR-A5KB-01 21 11047521 11047521 C A BAGE2 RNA 0.03 TCGA-OR-A5KB-01 21 11058188 11058188 C A BAGE2 RNA 0.11 TCGA-OR-A5KB-01 21 19666953 19666953 C A TMPRSS15 Missense_Mutation p.D760Y 0.59 deleterious(0) possibly_damaging(0.905) TCGA-OR-A5KB-01 21 19666954 19666954 C T TMPRSS15 Silent p.Q759Q 0.59 TCGA-OR-A5KB-01 21 31311813 31311813 C G GRIK1 Missense_Mutation p.E2D 0.69 tolerated_low_confidence(0.06) benign(0.003) TCGA-OR-A5KB-01 21 31538259 31538259 C T CLDN17 3'UTR 0.62 TCGA-OR-A5KB-01 21 31655215 31655215 A T KRTAP24-1 Silent p.P12P 0.66 TCGA-OR-A5KB-01 21 31797786 31797786 G C KRTAP13-3 Missense_Mutation p.P149A 0.76 deleterious(0) probably_damaging(0.949) TCGA-OR-A5KB-01 21 31812927 31812927 C A KRTAP15-1 Silent p.S94S 0.73 TCGA-OR-A5KB-01 21 31812928 31812928 C A KRTAP15-1 Missense_Mutation p.L95I 0.72 deleterious(0) possibly_damaging(0.714) TCGA-OR-A5KB-01 21 34896954 34896954 C A GART Intron 0.83 TCGA-OR-A5KB-01 21 38385914 38385914 G T RIPPLY3 Missense_Mutation p.V79L 0.74 deleterious(0.05) benign(0.014) TCGA-OR-A5KB-01 21 41719682 41719682 C A DSCAM Missense_Mutation p.M375I 0.75 tolerated(0.49) possibly_damaging(0.484) TCGA-OR-A5KB-01 21 44296862 44296862 G C WDR4 Silent p.L35L 0.68 TCGA-OR-A5KB-01 21 45773557 45773557 G T TRPM2 5'UTR 0.69 TCGA-OR-A5KB-01 21 45795727 45795727 C T TRPM2 Silent p.P261P 0.73 TCGA-OR-A5KB-01 21 45845667 45845667 C A TRPM2 Missense_Mutation p.P1251H 0.66 tolerated(0.45) benign(0.001) TCGA-OR-A5KB-01 21 45987802 45987802 C A TSPEAR Missense_Mutation p.R57L 0.79 deleterious(0.05) benign(0.001) TCGA-OR-A5KB-01 21 46047799 46047799 T G KRTAP10-9 Silent p.P237P 0.77 TCGA-OR-A5KB-01 21 46354995 46354995 C A C21orf67 Missense_Mutation p.R116M 0.75 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-OR-A5KB-01 21 46491920 46491920 C A ADARB1 5'Flank 0.75 TCGA-OR-A5KB-01 21 47423043 47423043 G T COL6A1 Missense_Mutation p.C815F 0.68 deleterious(0) probably_damaging(0.986) TCGA-OR-A5KB-01 22 19220842 19220842 C A CLTCL1 Splice_Site p.X457_splice 0.76 TCGA-OR-A5KB-01 22 22890510 22890510 G T PRAME Nonsense_Mutation p.C503* 0.64 TCGA-OR-A5KB-01 22 22890729 22890729 G T PRAME Silent p.L430L 0.58 TCGA-OR-A5KB-01 22 26164759 26164759 G T MYO18B Silent p.T292T 0.64 TCGA-OR-A5KB-01 22 26422797 26422797 C A MYO18B Missense_Mutation p.A2286D 0.69 deleterious(0) probably_damaging(0.929) TCGA-OR-A5KB-01 22 26761520 26761520 C G SEZ6L Missense_Mutation p.P928A 0.69 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 22 28559432 28559432 C T TTC28 Silent p.V363V 0.59 TCGA-OR-A5KB-01 22 29745300 29745300 C A AP1B1 Missense_Mutation p.M448I 0.63 tolerated(0.07) benign(0.135) TCGA-OR-A5KB-01 22 32547007 32547007 C G C22orf42 Splice_Site p.X156_splice 0.69 TCGA-OR-A5KB-01 22 32828365 32828365 C G BPIFC Missense_Mutation p.D382H 0.73 deleterious(0.01) probably_damaging(0.993) TCGA-OR-A5KB-01 22 33712075 33712075 C A LARGE Missense_Mutation p.D483Y 0.67 deleterious(0) probably_damaging(0.983) TCGA-OR-A5KB-01 22 37465237 37465237 C T TMPRSS6 Silent p.L672L 0.56 TCGA-OR-A5KB-01 22 38043305 38043305 A G SH3BP1 Silent p.P356P 0.40 TCGA-OR-A5KB-01 22 38284559 38284559 C T EIF3L 3'UTR 0.21 TCGA-OR-A5KB-01 22 39773724 39773724 C T SYNGR1 Intron 0.41 TCGA-OR-A5KB-01 22 39911079 39911079 G T MIEF1 3'UTR 0.26 TCGA-OR-A5KB-01 22 40417793 40417793 G A FAM83F Missense_Mutation p.A427T 0.22 tolerated_low_confidence(0.37) benign(0.064) TCGA-OR-A5KB-01 22 41278040 41278040 A T XPNPEP3 Missense_Mutation p.I150L 0.44 tolerated(0.42) benign(0.006) TCGA-OR-A5KB-01 22 41723297 41723297 G C ZC3H7B Missense_Mutation p.A125P 0.24 deleterious(0.01) possibly_damaging(0.842) TCGA-OR-A5KB-01 22 42089695 42089695 C T C22orf46 Missense_Mutation p.P149S 0.20 tolerated(0.23) probably_damaging(0.932) TCGA-OR-A5KB-01 22 42114182 42114182 G T MEI1 Nonsense_Mutation p.E213* 0.16 TCGA-OR-A5KB-01 22 42114184 42114184 G A MEI1 Silent p.E213E 0.17 TCGA-OR-A5KB-01 22 42781209 42781209 G T NFAM1 Missense_Mutation p.F257L 0.50 tolerated(0.11) benign(0.027) TCGA-OR-A5KB-01 22 43610215 43610215 T A SCUBE1 Missense_Mutation p.Q645L 0.43 tolerated(0.17) benign(0.02) TCGA-OR-A5KB-01 22 44151684 44151684 G A EFCAB6 Missense_Mutation p.R157C 0.48 deleterious(0.02) benign(0.024) TCGA-OR-A5KB-01 22 44161245 44161245 G A EFCAB6 Missense_Mutation p.P127L 0.39 deleterious(0.02) probably_damaging(0.976) TCGA-OR-A5KB-01 22 44161247 44161247 T A EFCAB6 Silent p.V126V 0.40 TCGA-OR-A5KB-01 22 44392271 44392271 C T SAMM50 3'UTR 0.27 TCGA-OR-A5KB-01 22 44395203 44395203 A G PARVB 5'UTR 0.16 TCGA-OR-A5KB-01 22 44602230 44602230 G T PARVG Missense_Mutation p.R307M 0.42 deleterious(0) probably_damaging(0.971) TCGA-OR-A5KB-01 22 45598876 45598876 C T KIAA0930 Missense_Mutation p.E288K 0.10 deleterious(0.04) benign(0.407) TCGA-OR-A5KB-01 22 45691536 45691536 C A UPK3A Missense_Mutation p.T267K 0.35 deleterious(0.02) benign(0.362) TCGA-OR-A5KB-01 22 45822021 45822021 G T RIBC2 Missense_Mutation p.R285L 0.45 deleterious(0.02) benign(0.168) TCGA-OR-A5KB-01 22 46509755 46509755 G T FLJ27365 3'UTR 0.62 TCGA-OR-A5KB-01 22 46835306 46835306 C T CELSR1 Missense_Mutation p.E1396K 0.23 deleterious(0.02) possibly_damaging(0.67) TCGA-OR-A5KB-01 22 50018299 50018299 G C C22orf34 Missense_Mutation p.H55Q 0.36 deleterious_low_confidence(0) benign(0.402) TCGA-OR-A5KB-01 22 50714236 50714236 A T AL022328.1 Missense_Mutation p.D45V 0.42 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5KB-01 22 51065667 51065667 C A ARSA Missense_Mutation p.G131V 0.47 deleterious(0) probably_damaging(0.987) TCGA-OR-A5KB-01 22 51183082 51183082 G A ACR Missense_Mutation p.G238E 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-OR-A5KB-01 2 102038877 102038877 T A RFX8 Missense_Mutation p.R44W 0.26 deleterious(0) possibly_damaging(0.896) TCGA-OR-A5KB-01 2 102855735 102855735 G C IL1RL2 3'UTR 0.14 TCGA-OR-A5KB-01 2 103090435 103090435 G T SLC9A4 Missense_Mutation p.V73F 0.39 tolerated(0.1) probably_damaging(0.993) TCGA-OR-A5KB-01 2 107041065 107041065 G A RGPD3 Silent p.L1120L 0.48 TCGA-OR-A5KB-01 2 107423334 107423334 C A ST6GAL2 Nonsense_Mutation p.E464* 0.42 TCGA-OR-A5KB-01 2 107459875 107459875 C A ST6GAL2 Nonsense_Mutation p.E187* 0.24 TCGA-OR-A5KB-01 2 109384075 109384075 A C RANBP2 Missense_Mutation p.L2360F 0.39 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 2 1094065 1094065 C G SNTG2 Silent p.V98V 0.36 TCGA-OR-A5KB-01 2 112945090 112945090 A C FBLN7 3'UTR 0.24 TCGA-OR-A5KB-01 2 113736244 113736244 G T IL36G Missense_Mutation p.G10V 0.46 deleterious_low_confidence(0.05) benign(0.145) TCGA-OR-A5KB-01 2 115200268 115200268 C A DPP10 5'UTR 0.42 TCGA-OR-A5KB-01 2 116535388 116535388 C - DPP10 Frame_Shift_Del p.R452Efs*14 0.31 TCGA-OR-A5KB-01 2 125192069 125192069 G A CNTNAP5 Missense_Mutation p.V180I 0.40 tolerated(0.09) benign(0.002) TCGA-OR-A5KB-01 2 125284869 125284869 C A CNTNAP5 Silent p.P494P 0.44 TCGA-OR-A5KB-01 2 125405388 125405388 C A CNTNAP5 Silent p.R643R 0.43 TCGA-OR-A5KB-01 2 128367426 128367426 C A MYO7B Silent p.A1009A 0.22 TCGA-OR-A5KB-01 2 128890799 128890799 G C UGGT1 Missense_Mutation p.V488L 0.28 deleterious(0.04) possibly_damaging(0.688) TCGA-OR-A5KB-01 2 129025569 129025569 C G HS6ST1 3'UTR 0.44 TCGA-OR-A5KB-01 2 130739163 130739163 C A RAB6C 3'UTR 0.25 TCGA-OR-A5KB-01 2 130832803 130832803 G A POTEF Missense_Mutation p.H748Y 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.748) TCGA-OR-A5KB-01 2 130898790 130898790 C A CCDC74B Missense_Mutation p.E208D 0.32 deleterious(0.05) benign(0.05) TCGA-OR-A5KB-01 2 130911967 130911967 C A SMPD4 Silent p.L553L 0.16 TCGA-OR-A5KB-01 2 131519737 131519737 G T AMER3 Missense_Mutation p.R31M 0.47 deleterious(0.02) benign(0.071) TCGA-OR-A5KB-01 2 131522476 131522476 G T AMER3 3'UTR 0.24 TCGA-OR-A5KB-01 2 131672768 131672768 G T ARHGEF4 5'Flank 0.17 TCGA-OR-A5KB-01 2 131803668 131803668 G A ARHGEF4 Missense_Mutation p.R660Q 0.47 deleterious(0.04) benign(0.156) TCGA-OR-A5KB-01 2 132021613 132021613 C A POTEE Missense_Mutation p.T862N 0.43 deleterious_low_confidence(0.04) probably_damaging(0.95) TCGA-OR-A5KB-01 2 132912309 132912309 C - ANKRD30BL Frame_Shift_Del p.R182Efs*10 0.18 TCGA-OR-A5KB-01 2 133174919 133174919 T A GPR39 Missense_Mutation p.S102T 0.46 tolerated(0.13) benign(0) TCGA-OR-A5KB-01 2 134275043 134275043 C G NCKAP5 Missense_Mutation p.D19H 0.17 deleterious(0) probably_damaging(0.939) TCGA-OR-A5KB-01 2 135738654 135738654 G C MAP3K19 Silent p.T1219T 0.21 TCGA-OR-A5KB-01 2 137814534 137814534 T A THSD7B Silent p.A228A 0.17 TCGA-OR-A5KB-01 2 141055390 141055390 G T LRP1B Missense_Mutation p.D4318E 0.54 benign(0.417) TCGA-OR-A5KB-01 2 141116494 141116494 G T LRP1B Missense_Mutation p.T3718K 0.39 possibly_damaging(0.557) TCGA-OR-A5KB-01 2 141128388 141128388 C T LRP1B Silent p.K3633K 0.40 TCGA-OR-A5KB-01 2 141245192 141245192 G A LRP1B Silent p.D3079D 0.26 TCGA-OR-A5KB-01 2 14774305 14774305 C A FAM84A Missense_Mutation p.P68T 0.40 deleterious(0.04) probably_damaging(0.992) TCGA-OR-A5KB-01 2 149837965 149837965 G C KIF5C Missense_Mutation p.V487L 0.36 tolerated(0.16) benign(0.335) TCGA-OR-A5KB-01 2 152320981 152320981 G T RIF1 Silent p.V1649V 0.29 TCGA-OR-A5KB-01 2 152321633 152321633 G A RIF1 Missense_Mutation p.G1867R 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.499) TCGA-OR-A5KB-01 2 152521284 152521284 T C NEB Missense_Mutation p.T1778A 0.44 benign(0.047) TCGA-OR-A5KB-01 2 152537258 152537258 C A NEB Missense_Mutation p.A1010S 0.35 possibly_damaging(0.801) TCGA-OR-A5KB-01 2 152563490 152563490 C A NEB Nonsense_Mutation p.E353* 0.28 TCGA-OR-A5KB-01 2 152727077 152727077 C A CACNB4 Missense_Mutation p.V223L 0.31 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 2 15372587 15372587 C A NBAS Silent p.L2065L 0.36 TCGA-OR-A5KB-01 2 154334873 154334873 C A RPRM Silent p.V69V 0.36 TCGA-OR-A5KB-01 2 154996920 154996920 G A GALNT13 Silent p.Q71Q 0.35 TCGA-OR-A5KB-01 2 160205740 160205740 C G BAZ2B Missense_Mutation p.G1639R 0.41 possibly_damaging(0.866) TCGA-OR-A5KB-01 2 162820704 162820704 C A SLC4A10 Nonsense_Mutation p.Y974* 0.30 TCGA-OR-A5KB-01 2 163059625 163059625 C T FAP Missense_Mutation p.D360N 0.31 tolerated(0.09) benign(0.294) TCGA-OR-A5KB-01 2 164466018 164466018 G C FIGN 3'UTR 0.25 TCGA-OR-A5KB-01 2 165353720 165353720 C A GRB14 Splice_Site p.X432_splice 0.30 TCGA-OR-A5KB-01 2 165353721 165353721 C A GRB14 Missense_Mutation p.A432S 0.30 tolerated(0.11) benign(0.011) TCGA-OR-A5KB-01 2 165947786 165947786 G T SCN3A Missense_Mutation p.A1626D 0.30 deleterious(0) probably_damaging(0.962) TCGA-OR-A5KB-01 2 166032795 166032795 G T SCN3A Missense_Mutation p.P37H 0.39 tolerated(0.05) probably_damaging(0.991) TCGA-OR-A5KB-01 2 166198817 166198817 G A SCN2A Silent p.G800G 0.16 TCGA-OR-A5KB-01 2 166198894 166198894 T C SCN2A Missense_Mutation p.F826S 0.32 deleterious(0) probably_damaging(0.913) TCGA-OR-A5KB-01 2 166351403 166351403 G C CSRNP3 5'UTR 0.21 TCGA-OR-A5KB-01 2 166535679 166535679 G T CSRNP3 Missense_Mutation p.G392C 0.38 tolerated(0.15) benign(0.298) TCGA-OR-A5KB-01 2 166535970 166535970 G A CSRNP3 Missense_Mutation p.G489S 0.31 tolerated_low_confidence(0.65) benign(0.006) TCGA-OR-A5KB-01 2 166626967 166626967 T - GALNT3 Frame_Shift_Del p.I82* 0.20 TCGA-OR-A5KB-01 2 166781171 166781171 T A TTC21B Missense_Mutation p.Q468H 0.40 deleterious(0) probably_damaging(0.928) TCGA-OR-A5KB-01 2 167060640 167060640 C A SCN9A Missense_Mutation p.M1522I 0.27 deleterious(0) possibly_damaging(0.876) TCGA-OR-A5KB-01 2 16743378 16743378 C - FAM49A Frame_Shift_Del p.T111Lfs*34 0.26 TCGA-OR-A5KB-01 2 168100697 168100697 C T XIRP2 Missense_Mutation p.T932I 0.32 benign(0.004) TCGA-OR-A5KB-01 2 168107417 168107417 C A XIRP2 Missense_Mutation p.P3172H 0.31 probably_damaging(0.986) TCGA-OR-A5KB-01 2 168107715 168107715 T G XIRP2 Nonsense_Mutation p.Y3271* 0.39 TCGA-OR-A5KB-01 2 169404169 169404169 G T CERS6 Silent p.P78P 0.41 TCGA-OR-A5KB-01 2 169759005 169759005 A T G6PC2 Missense_Mutation p.Y90F 0.31 deleterious(0.03) possibly_damaging(0.88) TCGA-OR-A5KB-01 2 169952367 169952367 C T DHRS9 3'UTR 0.41 TCGA-OR-A5KB-01 2 170088312 170088312 G T LRP2 Nonsense_Mutation p.C1713* 0.34 TCGA-OR-A5KB-01 2 176957863 176957863 G T HOXD13 Missense_Mutation p.R82L 0.31 tolerated(0.05) benign(0.254) TCGA-OR-A5KB-01 2 176996244 176996244 C A HOXD8 Missense_Mutation p.D259E 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-OR-A5KB-01 2 179209068 179209068 C A OSBPL6 Missense_Mutation p.A348E 0.32 tolerated(0.73) benign(0.149) TCGA-OR-A5KB-01 2 179341878 179341878 C A FKBP7 Missense_Mutation p.G95V 0.30 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 2 179406032 179406032 G T TTN Missense_Mutation p.P32591H 0.37 TCGA-OR-A5KB-01 2 179422421 179422421 G T TTN Silent p.I29220I 0.31 TCGA-OR-A5KB-01 2 179426459 179426459 G T TTN Missense_Mutation p.R28134S 0.32 TCGA-OR-A5KB-01 2 179426490 179426490 A T TTN Missense_Mutation p.S28123R 0.36 TCGA-OR-A5KB-01 2 179429435 179429435 C A TTN Nonsense_Mutation p.E27142* 0.18 TCGA-OR-A5KB-01 2 179430005 179430005 C T TTN Missense_Mutation p.V26952I 0.34 TCGA-OR-A5KB-01 2 179437248 179437248 T C TTN Silent p.T24537T 0.35 TCGA-OR-A5KB-01 2 179481738 179481738 C T TTN Missense_Mutation p.E15960K 0.30 TCGA-OR-A5KB-01 2 179481739 179481739 A T TTN Silent p.V15959V 0.28 TCGA-OR-A5KB-01 2 179482958 179482958 G T TTN Missense_Mutation p.P15743T 0.34 TCGA-OR-A5KB-01 2 179505334 179505334 G A TTN Missense_Mutation p.P13553S 0.32 TCGA-OR-A5KB-01 2 179517194 179517194 G A TTN Missense_Mutation p.P13040S 0.32 TCGA-OR-A5KB-01 2 179560965 179560965 A T TTN Silent p.A10278A 0.35 TCGA-OR-A5KB-01 2 179598048 179598048 C T TTN Silent p.E5324E 0.31 TCGA-OR-A5KB-01 2 179610937 179610937 G T TTN Intron 0.36 TCGA-OR-A5KB-01 2 179616717 179616717 G T TTN Intron 0.36 TCGA-OR-A5KB-01 2 179634824 179634824 G T TTN Silent p.V2868V 0.42 TCGA-OR-A5KB-01 2 183817593 183817593 T A NCKAP1 Missense_Mutation p.M817L 0.30 tolerated(1) benign(0.009) TCGA-OR-A5KB-01 2 185800948 185800948 T C ZNF804A Silent p.T275T 0.30 TCGA-OR-A5KB-01 2 186670638 186670638 T A FSIP2 Missense_Mutation p.N5624K 0.39 benign(0.297) TCGA-OR-A5KB-01 2 18736655 18736655 C T RDH14 Silent p.V271V 0.21 TCGA-OR-A5KB-01 2 187625878 187625878 T C FAM171B Missense_Mutation p.Y351H 0.41 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 2 188245197 188245197 C T CALCRL Silent p.V135V 0.06 TCGA-OR-A5KB-01 2 190719368 190719368 G C PMS1 Missense_Mutation p.C457S 0.29 tolerated(0.52) benign(0.002) TCGA-OR-A5KB-01 2 190927030 190927030 C A MSTN Missense_Mutation p.R98M 0.41 tolerated(0.1) benign(0.016) TCGA-OR-A5KB-01 2 190927320 190927320 C A MSTN Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0.02) benign(0.006) TCGA-OR-A5KB-01 2 1926733 1926733 G T MYT1L Missense_Mutation p.Q270K 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-OR-A5KB-01 2 1926734 1926734 G T MYT1L Silent p.A269A 0.39 TCGA-OR-A5KB-01 2 192863915 192863915 A T TMEFF2 Missense_Mutation p.C186S 0.33 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 2 193044393 193044393 C A TMEFF2 Splice_Site p.X147_splice 0.37 TCGA-OR-A5KB-01 2 196737099 196737099 T A DNAH7 Missense_Mutation p.T2170S 0.32 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 2 197511082 197511082 A G CCDC150 Silent p.T10T 0.34 TCGA-OR-A5KB-01 2 197964491 197964491 G A ANKRD44 3'UTR 0.26 TCGA-OR-A5KB-01 2 198950268 198950268 C A PLCL1 Missense_Mutation p.P676Q 0.24 tolerated(0.05) possibly_damaging(0.449) TCGA-OR-A5KB-01 2 203745444 203745455 TACGTTAGCTGT - WDR12 3'UTR 0.38 TCGA-OR-A5KB-01 2 204039945 204039945 G T NBEAL1 Silent p.G2104G 0.32 TCGA-OR-A5KB-01 2 207169902 207169902 G T ZDBF2 Missense_Mutation p.S217I 0.30 tolerated(0.08) benign(0.403) TCGA-OR-A5KB-01 2 207170268 207170268 G A ZDBF2 Missense_Mutation p.C339Y 0.27 tolerated(1) benign(0.384) TCGA-OR-A5KB-01 2 207174022 207174022 T G ZDBF2 Silent p.T1590T 0.39 TCGA-OR-A5KB-01 2 207174333 207174333 G T ZDBF2 Missense_Mutation p.R1694I 0.39 deleterious(0.05) benign(0.308) TCGA-OR-A5KB-01 2 207454220 207454220 G T ADAM23 Missense_Mutation p.W647L 0.37 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 2 207513528 207513528 G A DYTN 3'Flank 0.57 TCGA-OR-A5KB-01 2 207527859 207527859 G T DYTN Missense_Mutation p.S467R 0.33 deleterious(0.01) possibly_damaging(0.718) TCGA-OR-A5KB-01 2 207655353 207655353 A G FASTKD2 Silent p.R652R 0.20 TCGA-OR-A5KB-01 2 208992943 208992943 A G CRYGC Missense_Mutation p.V170A 0.41 tolerated(0.36) benign(0.02) TCGA-OR-A5KB-01 2 210745682 210745682 T A UNC80 Intron 0.29 TCGA-OR-A5KB-01 2 211457659 211457659 C G CPS1 Silent p.T387T 0.44 TCGA-OR-A5KB-01 2 211512667 211512667 G T CPS1 Missense_Mutation p.K1080N 0.31 tolerated(0.21) benign(0.003) TCGA-OR-A5KB-01 2 211527846 211527846 G T CPS1 Splice_Site p.X1316_splice 0.27 TCGA-OR-A5KB-01 2 21228418 21228418 C A APOB Silent p.L3774L 0.23 TCGA-OR-A5KB-01 2 212285242 212285242 T A ERBB4 Missense_Mutation p.E1020V 0.49 deleterious(0) possibly_damaging(0.638) TCGA-OR-A5KB-01 2 212578300 212578300 C A ERBB4 Silent p.G319G 0.38 TCGA-OR-A5KB-01 2 212589908 212589908 C A ERBB4 Missense_Mutation p.V212L 0.43 tolerated(0.17) benign(0.02) TCGA-OR-A5KB-01 2 212812187 212812187 C A ERBB4 Missense_Mutation p.G130V 0.37 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 2 219695074 219695074 G A PRKAG3 Missense_Mutation p.T87I 0.29 tolerated_low_confidence(0.08) benign(0.004) TCGA-OR-A5KB-01 2 219746981 219746981 A G WNT10A Missense_Mutation p.Q71R 0.35 deleterious(0) probably_damaging(0.988) TCGA-OR-A5KB-01 2 219854962 219854962 G T CRYBA2 3'UTR 0.39 TCGA-OR-A5KB-01 2 220098512 220098512 C G ANKZF1 Missense_Mutation p.P299A 0.21 deleterious(0) probably_damaging(0.913) TCGA-OR-A5KB-01 2 220159708 220159708 C T PTPRN Silent p.L888L 0.37 TCGA-OR-A5KB-01 2 220172174 220172174 A C PTPRN Missense_Mutation p.M91R 0.39 deleterious(0.01) possibly_damaging(0.544) TCGA-OR-A5KB-01 2 220239604 220239604 T A DNPEP Silent p.G460G 0.30 TCGA-OR-A5KB-01 2 220239605 220239605 C T DNPEP Missense_Mutation p.G460E 0.30 deleterious(0) possibly_damaging(0.862) TCGA-OR-A5KB-01 2 220379239 220379239 G T ASIC4 Silent p.R58R 0.36 TCGA-OR-A5KB-01 2 220405282 220405282 C A CHPF Missense_Mutation p.R384L 0.33 tolerated(0.19) benign(0.026) TCGA-OR-A5KB-01 2 220419228 220419228 G T OBSL1 Missense_Mutation p.S1615Y 0.33 tolerated(0.07) possibly_damaging(0.62) TCGA-OR-A5KB-01 2 220493241 220493241 G T SLC4A3 Missense_Mutation p.A56S 0.36 tolerated_low_confidence(1) benign(0.003) TCGA-OR-A5KB-01 2 224463929 224463929 C T SCG2 Silent p.G24G 0.36 TCGA-OR-A5KB-01 2 225338877 225338877 C A CUL3 3'UTR 0.39 TCGA-OR-A5KB-01 2 225661098 225661098 C T DOCK10 Missense_Mutation p.G1625S 0.42 tolerated(0.26) probably_damaging(0.999) TCGA-OR-A5KB-01 2 228882596 228882596 C A SPHKAP Missense_Mutation p.V992L 0.31 tolerated(0.13) benign(0.011) TCGA-OR-A5KB-01 2 228883407 228883407 G C SPHKAP Missense_Mutation p.F721L 0.32 tolerated(0.76) benign(0.013) TCGA-OR-A5KB-01 2 228883709 228883709 T A SPHKAP Nonsense_Mutation p.K621* 0.36 TCGA-OR-A5KB-01 2 228883760 228883760 C G SPHKAP Missense_Mutation p.G604R 0.37 deleterious(0.03) benign(0.172) TCGA-OR-A5KB-01 2 228884194 228884194 C T SPHKAP Missense_Mutation p.S459N 0.38 tolerated(0.15) benign(0.039) TCGA-OR-A5KB-01 2 228884765 228884765 C A SPHKAP Nonsense_Mutation p.E269* 0.31 TCGA-OR-A5KB-01 2 229890643 229890643 T A PID1 Missense_Mutation p.E151V 0.31 deleterious(0.02) possibly_damaging(0.656) TCGA-OR-A5KB-01 2 230723756 230723756 C G TRIP12 Silent p.S211S 0.29 TCGA-OR-A5KB-01 2 231906104 231906104 C - C2orf72 Frame_Shift_Del p.C244Afs*18 0.22 TCGA-OR-A5KB-01 2 233273466 233273466 G C ALPPL2 Silent p.L303L 0.62 TCGA-OR-A5KB-01 2 233322794 233322794 C A ALPI Missense_Mutation p.L315M 0.35 deleterious(0) possibly_damaging(0.662) TCGA-OR-A5KB-01 2 233415016 233415016 G A EIF4E2 5'UTR 0.16 TCGA-OR-A5KB-01 2 234229340 234229340 C A SAG Silent p.T82T 0.37 TCGA-OR-A5KB-01 2 234621950 234621950 C A UGT1A5 Missense_Mutation p.H105N 0.31 tolerated(0.22) benign(0.009) TCGA-OR-A5KB-01 2 235951205 235951205 G T SH3BP4 Nonsense_Mutation p.E598* 0.35 TCGA-OR-A5KB-01 2 238280884 238280884 A T COL6A3 Missense_Mutation p.V1259D 0.51 probably_damaging(0.997) TCGA-OR-A5KB-01 2 240951052 240951052 G C NDUFA10 Missense_Mutation p.T244S 0.32 tolerated(0.37) benign(0.088) TCGA-OR-A5KB-01 2 241078654 241078654 C T OTOS Missense_Mutation p.R68Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 2 24110821 24110821 C G ATAD2B Missense_Mutation p.K151N 0.19 deleterious(0.02) benign(0.212) TCGA-OR-A5KB-01 2 241658532 241658532 C A KIF1A Missense_Mutation p.R1702L 0.39 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 2 242066763 242066763 C A PASK Nonsense_Mutation p.E523* 0.38 TCGA-OR-A5KB-01 2 242192402 242192402 T A HDLBP Missense_Mutation p.R448W 0.30 deleterious(0) probably_damaging(0.985) TCGA-OR-A5KB-01 2 242606247 242606247 G T ATG4B Silent p.T242T 0.36 TCGA-OR-A5KB-01 2 24299196 24299196 C A SF3B14 5'UTR 0.47 TCGA-OR-A5KB-01 2 25326646 25326646 G C EFR3B Missense_Mutation p.G118A 0.24 tolerated(1) benign(0.128) TCGA-OR-A5KB-01 2 27479291 27479291 C T SLC30A3 Silent p.T327T 0.19 TCGA-OR-A5KB-01 2 29497978 29497978 G T ALK Silent p.I676I 0.35 TCGA-OR-A5KB-01 2 29754793 29754793 G - ALK Frame_Shift_Del p.P381Qfs*42 0.29 TCGA-OR-A5KB-01 2 31610680 31610680 C A XDH Missense_Mutation p.L216F 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 2 3197900 3197900 C T TSSC1 Missense_Mutation p.V231M 0.34 tolerated(0.06) probably_damaging(0.992) TCGA-OR-A5KB-01 2 32477523 32477523 C T NLRC4 Nonsense_Mutation p.W76* 0.45 TCGA-OR-A5KB-01 2 32673862 32673862 G T BIRC6 Splice_Site p.X1495_splice 0.35 TCGA-OR-A5KB-01 2 32865410 32865410 A C TTC27 Missense_Mutation p.K157T 0.26 tolerated(0.4) benign(0.004) TCGA-OR-A5KB-01 2 33752422 33752422 C T RASGRP3 Silent p.S342S 0.45 TCGA-OR-A5KB-01 2 33810384 33810384 C A FAM98A Missense_Mutation p.G339V 0.38 deleterious(0.01) unknown(0) TCGA-OR-A5KB-01 2 33952259 33952259 C T AC009499.1 Intron 0.19 TCGA-OR-A5KB-01 2 3447573 3447573 C G TRAPPC12 Missense_Mutation p.R481G 0.40 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KB-01 2 37599541 37599541 T C QPCT Missense_Mutation p.L289S 0.39 tolerated(0.44) benign(0.002) TCGA-OR-A5KB-01 2 40656207 40656207 G C SLC8A1 Missense_Mutation p.P405R 0.23 tolerated(0.43) possibly_damaging(0.752) TCGA-OR-A5KB-01 2 42578413 42578413 C A COX7A2L Silent p.G97G 0.19 TCGA-OR-A5KB-01 2 48872174 48872174 C A STON1-GTF2A1L Silent p.G806G 0.27 TCGA-OR-A5KB-01 2 50434742 50434742 G C NRXN1 Intron 0.17 TCGA-OR-A5KB-01 2 50574004 50574004 C T NRXN1 Intron 0.32 TCGA-OR-A5KB-01 2 53992682 53992682 T A ASB3 Missense_Mutation p.T45S 0.39 tolerated(0.48) benign(0.248) TCGA-OR-A5KB-01 2 54080954 54080954 C A GPR75 Missense_Mutation p.A314S 0.35 deleterious(0.03) possibly_damaging(0.676) TCGA-OR-A5KB-01 2 5834070 5834070 G T SOX11 Missense_Mutation p.S406I 0.23 deleterious(0) probably_damaging(0.979) TCGA-OR-A5KB-01 2 5840351 5840351 G T SOX11 3'UTR 0.32 TCGA-OR-A5KB-01 2 66667049 66667049 G T MEIS1 Missense_Mutation p.G105V 0.13 tolerated(0.06) possibly_damaging(0.887) TCGA-OR-A5KB-01 2 66667050 66667050 G T MEIS1 Silent p.G105G 0.12 TCGA-OR-A5KB-01 2 68805010 68805010 G T APLF Silent p.L464L 0.42 TCGA-OR-A5KB-01 2 69092925 69092925 A G BMP10 Silent p.I371I 0.50 TCGA-OR-A5KB-01 2 70188807 70188807 C A ASPRV1 Missense_Mutation p.G5V 0.21 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-OR-A5KB-01 2 71629179 71629179 G T ZNF638 Missense_Mutation p.G931C 0.19 tolerated(0.06) possibly_damaging(0.728) TCGA-OR-A5KB-01 2 71709010 71709010 G C DYSF Missense_Mutation p.G50A 0.29 tolerated(0.14) benign(0.406) TCGA-OR-A5KB-01 2 73115545 73115545 C T SPR Missense_Mutation p.S136F 0.24 deleterious(0) probably_damaging(0.968) TCGA-OR-A5KB-01 2 73519448 73519448 C G EGR4 Missense_Mutation p.A303P 0.12 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-OR-A5KB-01 2 73679621 73679621 A T ALMS1 Silent p.S1988S 0.42 TCGA-OR-A5KB-01 2 73717464 73717464 G - ALMS1 Frame_Shift_Del p.R2792Sfs*20 0.31 TCGA-OR-A5KB-01 2 74448582 74448582 C A SLC4A5 3'Flank 0.38 TCGA-OR-A5KB-01 2 74746335 74746335 G A DQX1 Missense_Mutation p.T610I 0.48 deleterious(0) possibly_damaging(0.511) TCGA-OR-A5KB-01 2 74761338 74761338 G T LOXL3 Silent p.A655A 0.15 TCGA-OR-A5KB-01 2 74761339 74761339 G T LOXL3 Missense_Mutation p.A655D 0.15 tolerated(0.07) probably_damaging(1) TCGA-OR-A5KB-01 2 75425974 75425974 G C TACR1 Silent p.A29A 0.28 TCGA-OR-A5KB-01 2 77745615 77745615 G T LRRTM4 Missense_Mutation p.H460Q 0.26 tolerated(0.5) benign(0.205) TCGA-OR-A5KB-01 2 79385466 79385466 G C REG3A Missense_Mutation p.H107D 0.20 deleterious(0) probably_damaging(0.925) TCGA-OR-A5KB-01 2 79878752 79878752 G T CTNNA2 Missense_Mutation p.V24L 0.37 deleterious(0) possibly_damaging(0.686) TCGA-OR-A5KB-01 2 80530470 80530470 C A LRRTM1 Missense_Mutation p.G159W 0.46 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 2 85577993 85577993 C T RETSAT Missense_Mutation p.M169I 0.43 tolerated(1) benign(0.004) TCGA-OR-A5KB-01 2 85625897 85625897 G T CAPG Silent p.G225G 0.18 TCGA-OR-A5KB-01 2 86769415 86769415 C A RNF103-CHMP3 Missense_Mutation p.K51N 0.30 tolerated(0.08) benign(0.141) TCGA-OR-A5KB-01 2 87069296 87069296 C A CD8B Intron 0.48 TCGA-OR-A5KB-01 2 88828736 88828736 G - TEX37 Frame_Shift_Del p.E97Rfs*67 0.22 TCGA-OR-A5KB-01 2 89185407 89185407 C T IGKV4-1 Missense_Mutation p.S34F 0.41 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 2 89417265 89417265 A T IGKV1-17 Missense_Mutation p.L15H 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 2 90229268 90229268 C A IGKV1D-42 Missense_Mutation p.P30T 0.26 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KB-01 2 95511143 95511143 G A RNU6-1320P 3'Flank 0.26 TCGA-OR-A5KB-01 2 96780750 96780750 C A ADRA2B Missense_Mutation p.C380F 0.42 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 2 96858161 96858161 C A STARD7 Missense_Mutation p.R263S 0.44 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 2 99181141 99181141 G T INPP4A Missense_Mutation p.R694S 0.21 tolerated(0.17) probably_damaging(0.995) TCGA-OR-A5KB-01 3 100948383 100948383 C G IMPG2 Missense_Mutation p.K1158N 0.58 deleterious(0.01) probably_damaging(0.963) TCGA-OR-A5KB-01 3 108812300 108812300 C A MORC1 Missense_Mutation p.M224I 0.16 tolerated(0.33) benign(0.004) TCGA-OR-A5KB-01 3 111898522 111898522 C T SLC9C1 Silent p.G925G 0.53 TCGA-OR-A5KB-01 3 112992151 112992151 C A BOC Missense_Mutation p.S399R 0.61 deleterious(0.04) probably_damaging(0.998) TCGA-OR-A5KB-01 3 113304098 113304098 G T SIDT1 Missense_Mutation p.G328W 0.51 deleterious(0) possibly_damaging(0.762) TCGA-OR-A5KB-01 3 118621406 118621406 G T IGSF11 Silent p.V419V 0.10 TCGA-OR-A5KB-01 3 120053716 120053716 C A LRRC58 Missense_Mutation p.K300N 0.12 tolerated(0.15) probably_damaging(0.942) TCGA-OR-A5KB-01 3 120347254 120347254 G T HGD Missense_Mutation p.N437K 0.16 tolerated(0.24) benign(0.001) TCGA-OR-A5KB-01 3 121340603 121340603 C T FBXO40 Silent p.T109T 0.53 TCGA-OR-A5KB-01 3 121972950 121972950 G T CASR 5'UTR 0.46 TCGA-OR-A5KB-01 3 122680055 122680055 G T SEMA5B Missense_Mutation p.P73H 0.54 deleterious_low_confidence(0.02) benign(0.064) TCGA-OR-A5KB-01 3 124017695 124017695 G C KALRN Missense_Mutation p.G341R 0.49 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 3 125869263 125869263 C A ALDH1L1 Missense_Mutation p.A334S 0.25 tolerated_low_confidence(0.11) benign(0.246) TCGA-OR-A5KB-01 3 126224620 126224620 G C UROC1 Missense_Mutation p.T246S 0.22 tolerated(0.45) probably_damaging(0.983) TCGA-OR-A5KB-01 3 127387303 127387303 G T PODXL2 Missense_Mutation p.R409L 0.54 deleterious(0) possibly_damaging(0.863) TCGA-OR-A5KB-01 3 129239080 129239080 G T IFT122 Missense_Mutation p.R1284L 0.62 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 129373858 129373858 C A TMCC1 Nonsense_Mutation p.E534* 0.20 TCGA-OR-A5KB-01 3 129695711 129695711 C A TRH Silent p.V127V 0.16 TCGA-OR-A5KB-01 3 129695712 129695712 G A TRH Missense_Mutation p.D128N 0.15 tolerated(0.07) possibly_damaging(0.883) TCGA-OR-A5KB-01 3 130159376 130159376 C A COL6A5 Missense_Mutation p.T2065N 0.56 deleterious(0.01) benign(0.374) TCGA-OR-A5KB-01 3 130159377 130159377 C A COL6A5 Silent p.T2065T 0.54 TCGA-OR-A5KB-01 3 138121233 138121233 G C MRAS 3'UTR 0.57 TCGA-OR-A5KB-01 3 138724701 138724701 A T PRR23A Missense_Mutation p.V137D 0.50 deleterious(0) probably_damaging(0.948) TCGA-OR-A5KB-01 3 138762923 138762923 G C PRR23C Silent p.P180P 0.58 TCGA-OR-A5KB-01 3 13896295 13896295 G T WNT7A Silent p.R102R 0.72 TCGA-OR-A5KB-01 3 140167391 140167391 G T CLSTN2 Missense_Mutation p.G273V 0.19 deleterious(0) probably_damaging(0.985) TCGA-OR-A5KB-01 3 140265408 140265408 C A CLSTN2 Missense_Mutation p.A520D 0.57 deleterious(0) probably_damaging(0.991) TCGA-OR-A5KB-01 3 140396928 140396928 T A TRIM42 5'UTR 0.17 TCGA-OR-A5KB-01 3 141904794 141904794 C A GK5 Missense_Mutation p.V265L 0.10 deleterious(0.04) possibly_damaging(0.588) TCGA-OR-A5KB-01 3 142232433 142232433 C G ATR Missense_Mutation p.M1517I 0.19 tolerated(1) benign(0.004) TCGA-OR-A5KB-01 3 142523389 142523389 A G TRPC1 Missense_Mutation p.I691V 0.17 tolerated(0.51) benign(0.002) TCGA-OR-A5KB-01 3 148586735 148586735 G T CPA3 Missense_Mutation p.V60L 0.17 deleterious(0.03) possibly_damaging(0.478) TCGA-OR-A5KB-01 3 148923984 148923984 G A CP Silent p.F393F 0.14 TCGA-OR-A5KB-01 3 149095253 149095253 G T TM4SF1 Missense_Mutation p.L28I 0.44 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 3 149095254 149095254 C T TM4SF1 Silent p.L27L 0.45 TCGA-OR-A5KB-01 3 151055969 151055969 C G P2RY12 Missense_Mutation p.R222T 0.15 deleterious(0.03) possibly_damaging(0.765) TCGA-OR-A5KB-01 3 151166386 151166386 T A IGSF10 Silent p.P461P 0.56 TCGA-OR-A5KB-01 3 151599344 151599344 G T SUCNR1 3'UTR 0.17 TCGA-OR-A5KB-01 3 152880651 152880651 G T RAP2B Missense_Mutation p.D57Y 0.52 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 154146424 154146424 C A GPR149 Missense_Mutation p.M327I 0.56 deleterious(0) possibly_damaging(0.815) TCGA-OR-A5KB-01 3 154884770 154884770 G T MME Missense_Mutation p.M580I 0.56 deleterious(0.02) possibly_damaging(0.485) TCGA-OR-A5KB-01 3 156413771 156413771 A T TIPARP Nonsense_Mutation p.R402* 0.29 TCGA-OR-A5KB-01 3 161214847 161214847 C T OTOL1 Silent p.L84L 0.10 TCGA-OR-A5KB-01 3 164786984 164786984 C A SI Splice_Site p.X86_splice 0.15 TCGA-OR-A5KB-01 3 164905594 164905594 G T SLITRK3 3'UTR 0.62 TCGA-OR-A5KB-01 3 165547305 165547305 C A BCHE Missense_Mutation p.G506V 0.15 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 167184843 167184843 C G SERPINI2 Missense_Mutation p.G160R 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5KB-01 3 167218046 167218046 G A WDR49 Missense_Mutation p.P624S 0.55 tolerated(0.14) possibly_damaging(0.504) TCGA-OR-A5KB-01 3 169644583 169644583 G T SAMD7 Missense_Mutation p.G178V 0.18 tolerated(0.08) possibly_damaging(0.881) TCGA-OR-A5KB-01 3 170928929 170928929 T A TNIK Silent p.P94P 0.45 TCGA-OR-A5KB-01 3 179076752 179076752 C T MFN1 Missense_Mutation p.L125F 0.54 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 3 179332777 179332777 G T NDUFB5 Missense_Mutation p.G48V 0.22 deleterious(0) possibly_damaging(0.879) TCGA-OR-A5KB-01 3 180366051 180366051 C T CCDC39 Missense_Mutation p.E422K 0.19 deleterious(0.04) benign(0.105) TCGA-OR-A5KB-01 3 180369189 180369189 C T CCDC39 Silent p.K389K 0.41 TCGA-OR-A5KB-01 3 181430384 181430384 G T SOX2 Missense_Mutation p.W79L 0.12 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 183013226 183013226 G T MCF2L2 Missense_Mutation p.Q513K 0.19 deleterious(0.01) benign(0.418) TCGA-OR-A5KB-01 3 183679297 183679297 A T ABCC5 Splice_Site p.X793_splice 0.52 TCGA-OR-A5KB-01 3 183952539 183952539 G T VWA5B2 Missense_Mutation p.R314L 0.59 deleterious(0) possibly_damaging(0.491) TCGA-OR-A5KB-01 3 184105719 184105719 G T CHRD Missense_Mutation p.G818W 0.12 deleterious(0) probably_damaging(0.988) TCGA-OR-A5KB-01 3 185337191 185337191 G T SENP2 Silent p.G449G 0.62 TCGA-OR-A5KB-01 3 186389494 186389494 C A HRG Silent p.A158A 0.50 TCGA-OR-A5KB-01 3 189612294 189612294 C A TP63 3'UTR 0.14 TCGA-OR-A5KB-01 3 191107354 191107354 C T CCDC50 Silent p.S464S 0.37 TCGA-OR-A5KB-01 3 193376763 193376763 C T OPA1 Silent p.L789L 0.18 TCGA-OR-A5KB-01 3 194080771 194080771 C A LRRC15 Silent p.P340P 0.16 TCGA-OR-A5KB-01 3 195022705 195022705 C A ACAP2 Nonsense_Mutation p.G439* 0.18 TCGA-OR-A5KB-01 3 196674222 196674222 G C PIGZ Missense_Mutation p.L516V 0.49 tolerated(0.26) benign(0.05) TCGA-OR-A5KB-01 3 197402298 197402298 C A KIAA0226 Missense_Mutation p.C912F 0.47 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 197420601 197420601 C T KIAA0226 Missense_Mutation p.E591K 0.24 deleterious(0.01) benign(0.297) TCGA-OR-A5KB-01 3 21462870 21462870 C A ZNF385D Missense_Mutation p.A342S 0.67 tolerated(0.18) probably_damaging(0.935) TCGA-OR-A5KB-01 3 28454817 28454817 G T ZCWPW2 Missense_Mutation p.Q86H 0.75 deleterious(0.04) benign(0.006) TCGA-OR-A5KB-01 3 30713626 30713626 G T TGFBR2 Missense_Mutation p.L342F 0.65 tolerated(0.09) benign(0.392) TCGA-OR-A5KB-01 3 35725549 35725549 G T ARPP21 Intron 0.62 TCGA-OR-A5KB-01 3 38936044 38936044 G T SCN11A Missense_Mutation p.Q939K 0.54 tolerated(0.71) benign(0.186) TCGA-OR-A5KB-01 3 38991675 38991675 C T SCN11A Missense_Mutation p.R60K 0.63 tolerated(1) probably_damaging(0.996) TCGA-OR-A5KB-01 3 39151570 39151570 G T TTC21A Missense_Mutation p.D70Y 0.55 deleterious(0) possibly_damaging(0.84) TCGA-OR-A5KB-01 3 39307473 39307473 A T CX3CR1 Silent p.L208L 0.52 TCGA-OR-A5KB-01 3 39307475 39307475 G T CX3CR1 Missense_Mutation p.L208I 0.53 tolerated(0.46) benign(0.041) TCGA-OR-A5KB-01 3 42787495 42787495 C T CCDC13 Missense_Mutation p.D249N 0.43 deleterious(0.02) possibly_damaging(0.864) TCGA-OR-A5KB-01 3 4345332 4345332 G A SETMAR Intron 0.45 TCGA-OR-A5KB-01 3 44609420 44609420 A T ZKSCAN7 Silent p.P203P 0.37 TCGA-OR-A5KB-01 3 4693830 4693830 G T ITPR1 Silent p.R293R 0.67 TCGA-OR-A5KB-01 3 47618883 47618883 G C CSPG5 Missense_Mutation p.D211E 0.52 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-OR-A5KB-01 3 48607044 48607044 C G COL7A1 Missense_Mutation p.R2532P 0.56 possibly_damaging(0.467) TCGA-OR-A5KB-01 3 52402787 52402787 G T DNAH1 Silent p.R1932R 0.53 TCGA-OR-A5KB-01 3 57458294 57458294 G T snoU13 5'Flank 0.56 TCGA-OR-A5KB-01 3 62535700 62535700 C A CADPS Missense_Mutation p.W615L 0.55 deleterious(0.01) possibly_damaging(0.668) TCGA-OR-A5KB-01 3 68593701 68593701 C A FAM19A1 3'UTR 0.54 TCGA-OR-A5KB-01 3 6903300 6903300 G T GRM7 Silent p.G75G 0.67 TCGA-OR-A5KB-01 3 77607213 77607213 C A ROBO2 Missense_Mutation p.S466R 0.53 tolerated(0.6) possibly_damaging(0.637) TCGA-OR-A5KB-01 3 78795964 78795964 C A ROBO1 Missense_Mutation p.G196C 0.58 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 86115964 86115964 C A CADM2 3'Flank 0.64 TCGA-OR-A5KB-01 3 87322579 87322579 C A POU1F1 Missense_Mutation p.L70F 0.60 tolerated_low_confidence(0.05) benign(0.004) TCGA-OR-A5KB-01 3 88199114 88199114 A T C3orf38 5'UTR 0.62 TCGA-OR-A5KB-01 3 89448673 89448674 - T EPHA3 Intron 0.32 TCGA-OR-A5KB-01 3 93617357 93617357 C A PROS1 Missense_Mutation p.G262C 0.21 deleterious(0) probably_damaging(0.928) TCGA-OR-A5KB-01 3 9483874 9483874 G T SETD5 Missense_Mutation p.R341L 0.62 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 3 97466266 97466266 G T EPHA6 Splice_Site p.X1043_splice 0.30 TCGA-OR-A5KB-01 3 97806110 97806110 G T OR5AC2 Missense_Mutation p.V32L 0.21 tolerated(0.24) benign(0.008) TCGA-OR-A5KB-01 3 98002120 98002120 C A OR5H2 Missense_Mutation p.A130D 0.37 deleterious(0) probably_damaging(0.972) TCGA-OR-A5KB-01 3 9839433 9839433 C A ARPC4 Silent p.R51R 0.64 TCGA-OR-A5KB-01 4 100235236 100235236 G A ADH1B Silent p.V190V 0.47 TCGA-OR-A5KB-01 4 100237112 100237112 G T ADH1B Silent p.V170V 0.27 TCGA-OR-A5KB-01 4 1019161 1019161 G C FGFRL1 3'UTR 0.23 TCGA-OR-A5KB-01 4 103537720 103537720 G T NFKB1 Missense_Mutation p.G960V 0.60 tolerated_low_confidence(0.09) possibly_damaging(0.628) TCGA-OR-A5KB-01 4 103557078 103557078 T C MANBA Missense_Mutation p.T701A 0.20 tolerated(0.83) benign(0.001) TCGA-OR-A5KB-01 4 104032111 104032111 C A CENPE Missense_Mutation p.G2533V 0.48 probably_damaging(1) TCGA-OR-A5KB-01 4 104066245 104066245 C A CENPE Missense_Mutation p.D1607Y 0.39 possibly_damaging(0.794) TCGA-OR-A5KB-01 4 104080288 104080288 A T CENPE Missense_Mutation p.M827K 0.49 benign(0) TCGA-OR-A5KB-01 4 104102532 104102532 T A CENPE Nonsense_Mutation p.R349* 0.31 TCGA-OR-A5KB-01 4 10446969 10446969 T A ZNF518B Silent p.P328P 0.21 TCGA-OR-A5KB-01 4 106640417 106640417 G T GSTCD Silent p.G209G 0.40 TCGA-OR-A5KB-01 4 107845222 107845222 A T DKK2 Missense_Mutation p.H223Q 0.23 deleterious(0) benign(0.382) TCGA-OR-A5KB-01 4 107956686 107956686 C A DKK2 Silent p.L21L 0.40 TCGA-OR-A5KB-01 4 111539439 111539439 G C PITX2 Missense_Mutation p.P273A 0.58 tolerated(0.16) possibly_damaging(0.592) TCGA-OR-A5KB-01 4 114199709 114199709 G T ANK2 Missense_Mutation p.A626S 0.60 probably_damaging(0.999) TCGA-OR-A5KB-01 4 114279073 114279073 C G ANK2 Missense_Mutation p.P3100R 0.66 probably_damaging(1) TCGA-OR-A5KB-01 4 114294594 114294594 G A ANK2 Missense_Mutation p.E3950K 0.59 benign(0.005) TCGA-OR-A5KB-01 4 115544819 115544819 A T UGT8 Silent p.V261V 0.56 TCGA-OR-A5KB-01 4 115773935 115773935 C A NDST4 Nonsense_Mutation p.E588* 0.62 TCGA-OR-A5KB-01 4 119978893 119978893 A T SYNPO2 Missense_Mutation p.Q1197L 0.14 deleterious_low_confidence(0.04) benign(0.168) TCGA-OR-A5KB-01 4 122593694 122593694 T A ANXA5 Nonsense_Mutation p.R207* 0.62 TCGA-OR-A5KB-01 4 122853706 122853706 G A TRPC3 Missense_Mutation p.P236L 0.64 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 4 123227129 123227129 C A KIAA1109 Nonsense_Mutation p.S3257* 0.61 TCGA-OR-A5KB-01 4 125591276 125591276 T A ANKRD50 Silent p.A1052A 0.64 TCGA-OR-A5KB-01 4 125592669 125592669 T G ANKRD50 Missense_Mutation p.Q588P 0.10 deleterious(0.02) probably_damaging(0.968) TCGA-OR-A5KB-01 4 126370695 126370695 A T FAT4 Nonsense_Mutation p.R2842* 0.14 TCGA-OR-A5KB-01 4 126372220 126372220 A T FAT4 Missense_Mutation p.K3350M 0.61 possibly_damaging(0.653) TCGA-OR-A5KB-01 4 128554189 128554189 G A INTU 5'UTR 0.12 TCGA-OR-A5KB-01 4 129964623 129964623 C A SCLT1 Splice_Site p.X54_splice 0.15 TCGA-OR-A5KB-01 4 134071578 134071578 C A PCDH10 Missense_Mutation p.L95M 0.23 tolerated(0.06) possibly_damaging(0.539) TCGA-OR-A5KB-01 4 134071922 134071922 G A PCDH10 Silent p.G209G 0.37 TCGA-OR-A5KB-01 4 134073851 134073851 C A PCDH10 Silent p.P852P 0.35 TCGA-OR-A5KB-01 4 13615256 13615256 C A BOD1L1 Nonsense_Mutation p.G402* 0.22 TCGA-OR-A5KB-01 4 1373968 1373968 C T UVSSA Missense_Mutation p.R568C 0.41 deleterious(0) probably_damaging(0.982) TCGA-OR-A5KB-01 4 138451929 138451929 C A PCDH18 Missense_Mutation p.E438D 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-OR-A5KB-01 4 1388416 1388416 A G CRIPAK Silent p.R39R 0.23 TCGA-OR-A5KB-01 4 142155000 142155000 G T ZNF330 Nonsense_Mutation p.E274* 0.24 TCGA-OR-A5KB-01 4 144359748 144359748 G C GAB1 Missense_Mutation p.R397P 0.24 deleterious(0.05) possibly_damaging(0.737) TCGA-OR-A5KB-01 4 146563573 146563573 G T MMAA Missense_Mutation p.M166I 0.17 tolerated(0.22) benign(0.425) TCGA-OR-A5KB-01 4 148968042 148968042 G T ARHGAP10 Splice_Site p.X623_splice 0.36 TCGA-OR-A5KB-01 4 154709637 154709637 G T SFRP2 Silent p.L117L 0.24 TCGA-OR-A5KB-01 4 15512967 15512967 G C CC2D2A Missense_Mutation p.R213T 0.25 tolerated(0.08) benign(0.085) TCGA-OR-A5KB-01 4 155156608 155156608 C T DCHS2 Missense_Mutation p.D2611N 0.31 tolerated(0.14) benign(0.004) TCGA-OR-A5KB-01 4 155241704 155241704 T A DCHS2 Missense_Mutation p.H1161L 0.33 deleterious(0) probably_damaging(0.913) TCGA-OR-A5KB-01 4 15717413 15717413 G T BST1 Missense_Mutation p.G232V 0.35 deleterious(0) possibly_damaging(0.801) TCGA-OR-A5KB-01 4 158224710 158224710 C A GRIA2 Missense_Mutation p.S79Y 0.16 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 4 158281286 158281286 C A GRIA2 Missense_Mutation p.S761Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-OR-A5KB-01 4 158281287 158281287 C G GRIA2 Silent p.S761S 0.20 TCGA-OR-A5KB-01 4 159092012 159092012 C G FAM198B Silent p.L172L 0.27 TCGA-OR-A5KB-01 4 159162724 159162724 T A TMEM144 Missense_Mutation p.L289Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 4 159573178 159573178 C A RXFP1 Missense_Mutation p.Q749K 0.19 tolerated_low_confidence(0.08) benign(0.003) TCGA-OR-A5KB-01 4 164247178 164247178 G T NPY1R Missense_Mutation p.Q177K 0.21 tolerated(0.28) benign(0.158) TCGA-OR-A5KB-01 4 164393463 164393463 C A TKTL2 Missense_Mutation p.R475L 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-OR-A5KB-01 4 166960572 166960572 T A TLL1 Missense_Mutation p.W414R 0.23 deleterious(0.02) probably_damaging(0.987) TCGA-OR-A5KB-01 4 167020586 167020586 G T TLL1 Silent p.V938V 0.32 TCGA-OR-A5KB-01 4 169383010 169383010 C A DDX60L Missense_Mutation p.G149V 0.25 deleterious(0) probably_damaging(0.987) TCGA-OR-A5KB-01 4 170506532 170506532 C A NEK1 Missense_Mutation p.A259S 0.21 tolerated(0.27) benign(0.23) TCGA-OR-A5KB-01 4 173734869 173734869 T C GALNTL6 Silent p.P306P 0.29 TCGA-OR-A5KB-01 4 17524572 17524572 G T CLRN2 Silent p.L113L 0.24 TCGA-OR-A5KB-01 4 177098263 177098263 T A WDR17 Silent p.S1207S 0.29 TCGA-OR-A5KB-01 4 17805608 17805608 C A DCAF16 Missense_Mutation p.A53S 0.10 tolerated_low_confidence(0.74) possibly_damaging(0.866) TCGA-OR-A5KB-01 4 178881997 178881997 C G LINC01098 5'UTR 0.25 TCGA-OR-A5KB-01 4 183245138 183245138 C A TENM3 5'UTR 0.41 TCGA-OR-A5KB-01 4 183659684 183659684 G T TENM3 Silent p.L1122L 0.21 TCGA-OR-A5KB-01 4 187455197 187455197 G T MTNR1A Missense_Mutation p.D233E 0.29 tolerated(0.3) benign(0.123) TCGA-OR-A5KB-01 4 187455239 187455239 C A MTNR1A Missense_Mutation p.Q219H 0.30 tolerated(0.28) benign(0.002) TCGA-OR-A5KB-01 4 187539244 187539244 C A FAT1 Missense_Mutation p.R2832S 0.19 benign(0.297) TCGA-OR-A5KB-01 4 187539245 187539245 C A FAT1 Missense_Mutation p.R2832M 0.19 possibly_damaging(0.886) TCGA-OR-A5KB-01 4 187541066 187541066 C A FAT1 Missense_Mutation p.S2225I 0.27 possibly_damaging(0.797) TCGA-OR-A5KB-01 4 189060627 189060627 G T TRIML1 5'UTR 0.12 TCGA-OR-A5KB-01 4 189068073 189068073 C A TRIML1 Silent p.P318P 0.32 TCGA-OR-A5KB-01 4 20529995 20529995 G T SLIT2 Intron 0.18 TCGA-OR-A5KB-01 4 20530599 20530599 G T SLIT2 Missense_Mutation p.S497I 0.11 deleterious(0.01) possibly_damaging(0.649) TCGA-OR-A5KB-01 4 20543086 20543086 G C SLIT2 Missense_Mutation p.A663P 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 4 20550717 20550717 C G SLIT2 Missense_Mutation p.R819G 0.39 tolerated(0.54) benign(0.014) TCGA-OR-A5KB-01 4 20711305 20711305 G C PACRGL Splice_Site p.X92_splice 0.50 TCGA-OR-A5KB-01 4 2073760 2073760 G T POLN 3'UTR 0.23 TCGA-OR-A5KB-01 4 23815899 23815899 C G PPARGC1A Missense_Mutation p.E403Q 0.42 tolerated(0.28) benign(0.041) TCGA-OR-A5KB-01 4 26997095 26997095 A T STIM2 Missense_Mutation p.K164N 0.34 tolerated(1) benign(0.028) TCGA-OR-A5KB-01 4 30724205 30724205 C A PCDH7 Silent p.A387A 0.44 TCGA-OR-A5KB-01 4 30725203 30725203 C A PCDH7 Missense_Mutation p.P720H 0.25 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 4 30726108 30726108 C A PCDH7 Missense_Mutation p.Q1022K 0.33 deleterious(0) probably_damaging(0.95) TCGA-OR-A5KB-01 4 36214095 36214095 C A ARAP2 Missense_Mutation p.K352N 0.29 tolerated(0.22) benign(0.138) TCGA-OR-A5KB-01 4 40337897 40337897 G C CHRNA9 Missense_Mutation p.E40Q 0.25 tolerated(0.4) benign(0.139) TCGA-OR-A5KB-01 4 41984385 41984385 C G DCAF4L1 Silent p.L192L 0.09 TCGA-OR-A5KB-01 4 42895306 42895306 C A GRXCR1 Missense_Mutation p.P8Q 0.18 deleterious_low_confidence(0.03) benign(0.008) TCGA-OR-A5KB-01 4 44177094 44177094 C A KCTD8 Missense_Mutation p.A379S 0.31 tolerated(1) benign(0.002) TCGA-OR-A5KB-01 4 46042990 46042990 C - GABRG1 3'UTR 0.45 TCGA-OR-A5KB-01 4 46060307 46060307 G T GABRG1 Nonsense_Mutation p.C281* 0.32 TCGA-OR-A5KB-01 4 52895076 52895076 C A SGCB Missense_Mutation p.Q147H 0.29 deleterious(0.02) benign(0.109) TCGA-OR-A5KB-01 4 52944930 52944930 C A SPATA18 Missense_Mutation p.F350L 0.26 deleterious(0.03) probably_damaging(0.916) TCGA-OR-A5KB-01 4 56763013 56763013 G T EXOC1 Missense_Mutation p.R695L 0.37 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 4 5749913 5749913 C G EVC Missense_Mutation p.H326Q 0.50 tolerated(0.92) benign(0.019) TCGA-OR-A5KB-01 4 57889607 57889609 ATG - POLR2B In_Frame_Del p.N876_E877delinsK 0.44 TCGA-OR-A5KB-01 4 65180421 65180421 G T TECRL Missense_Mutation p.P166T 0.40 tolerated(0.14) benign(0.001) TCGA-OR-A5KB-01 4 66201818 66201818 T C EPHA5 Missense_Mutation p.Y895C 0.40 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 4 66467370 66467370 C A EPHA5 Missense_Mutation p.G300V 0.43 tolerated(0.1) benign(0.206) TCGA-OR-A5KB-01 4 68492095 68492095 G A UBA6 Missense_Mutation p.S834F 0.20 deleterious(0.03) benign(0.212) TCGA-OR-A5KB-01 4 69343119 69343119 T A TMPRSS11E Missense_Mutation p.F247Y 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-OR-A5KB-01 4 69795545 69795545 C G UGT2A3 Missense_Mutation p.E524Q 0.44 tolerated(0.22) benign(0.296) TCGA-OR-A5KB-01 4 70707711 70707711 C G SULT1E1 3'UTR 0.63 TCGA-OR-A5KB-01 4 70920167 70920167 T C HTN1 Silent p.H34H 0.17 TCGA-OR-A5KB-01 4 71347603 71347603 T C MUC7 3'UTR 0.35 TCGA-OR-A5KB-01 4 72622606 72622606 C T GC Missense_Mutation p.C305Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 4 74703522 74703522 C A CXCL6 3'UTR 0.23 TCGA-OR-A5KB-01 4 78641630 78641630 T C CNOT6L Silent p.P541P 0.26 TCGA-OR-A5KB-01 4 81207738 81207738 C A FGF5 Missense_Mutation p.P240H 0.19 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-OR-A5KB-01 4 82090866 82090866 T A PRKG2 Missense_Mutation p.R267W 0.22 deleterious(0) probably_damaging(0.982) TCGA-OR-A5KB-01 4 82125944 82125944 C A PRKG2 Silent p.V86V 0.39 TCGA-OR-A5KB-01 4 83785613 83785613 G A SEC31A Nonsense_Mutation p.Q446* 0.48 TCGA-OR-A5KB-01 4 85626662 85626662 C A WDFY3 Missense_Mutation p.E2740D 0.39 deleterious(0.03) benign(0.099) TCGA-OR-A5KB-01 4 85722990 85722991 - A WDFY3 Frame_Shift_Ins p.A879Cfs*19 0.18 TCGA-OR-A5KB-01 4 87744863 87744863 C A SLC10A6 Missense_Mutation p.G371V 0.22 deleterious_low_confidence(0) benign(0.445) TCGA-OR-A5KB-01 4 87769948 87769948 C A SLC10A6 Silent p.P107P 0.49 TCGA-OR-A5KB-01 4 89183681 89183681 C G PPM1K 3'UTR 0.46 TCGA-OR-A5KB-01 4 89607931 89607931 A C HERC3 Missense_Mutation p.E851A 0.27 deleterious(0.01) benign(0.287) TCGA-OR-A5KB-01 4 90857026 90857026 T G MMRN1 Missense_Mutation p.M732R 0.27 deleterious(0) benign(0.372) TCGA-OR-A5KB-01 4 90857213 90857213 G T MMRN1 Missense_Mutation p.Q794H 0.37 tolerated(0.06) probably_damaging(0.94) TCGA-OR-A5KB-01 4 95497186 95497186 G T PDLIM5 Splice_Site p.X128_splice 0.33 TCGA-OR-A5KB-01 4 96075737 96075737 G T BMPR1B Missense_Mutation p.W504C 0.26 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 4 9827947 9827947 T A SLC2A9 3'UTR 0.28 TCGA-OR-A5KB-01 5 101794169 101794169 G C SLCO6A1 Missense_Mutation p.R350G 0.40 deleterious(0.04) possibly_damaging(0.726) TCGA-OR-A5KB-01 5 102508858 102508858 G T PPIP5K2 Splice_Site p.X763_splice 0.48 TCGA-OR-A5KB-01 5 110407145 110407145 G C TSLP 5'Flank 0.47 TCGA-OR-A5KB-01 5 112175595 112175595 G C APC Missense_Mutation p.R1435T 0.25 probably_damaging(0.997) TCGA-OR-A5KB-01 5 112899724 112899724 G T YTHDC2 Missense_Mutation p.V871L 0.38 tolerated(0.05) benign(0.085) TCGA-OR-A5KB-01 5 11364815 11364815 C G CTNND2 Silent p.T455T 0.48 TCGA-OR-A5KB-01 5 11397217 11397217 G A CTNND2 Silent p.L180L 0.33 TCGA-OR-A5KB-01 5 115318994 115318994 G A AQPEP Missense_Mutation p.A236T 0.50 tolerated(0.11) probably_damaging(0.954) TCGA-OR-A5KB-01 5 115813810 115813821 TGCCCATGATCC - SEMA6A In_Frame_Del p.R486_G489del 0.07 TCGA-OR-A5KB-01 5 118809620 118809620 G T HSD17B4 Missense_Mutation p.D69Y 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-OR-A5KB-01 5 122110760 122110760 C G SNX2 5'UTR 0.28 TCGA-OR-A5KB-01 5 126755743 126755743 C A MEGF10 Missense_Mutation p.H478Q 0.19 tolerated(1) possibly_damaging(0.775) TCGA-OR-A5KB-01 5 126769171 126769171 C G MEGF10 Missense_Mutation p.P604A 0.24 tolerated(0.11) probably_damaging(0.999) TCGA-OR-A5KB-01 5 127595479 127595479 C A FBN2 Missense_Mutation p.V2803F 0.16 deleterious(0.01) benign(0.118) TCGA-OR-A5KB-01 5 127640733 127640733 C A FBN2 Missense_Mutation p.G1906C 0.19 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 5 127782257 127782257 C A FBN2 Missense_Mutation p.G290V 0.14 deleterious(0) benign(0.02) TCGA-OR-A5KB-01 5 127800433 127800433 G T FBN2 Silent p.R270R 0.34 TCGA-OR-A5KB-01 5 128302151 128302151 G T SLC27A6 Silent p.T107T 0.44 TCGA-OR-A5KB-01 5 130522733 130522733 G T LYRM7 Missense_Mutation p.G59C 0.23 deleterious(0) probably_damaging(0.962) TCGA-OR-A5KB-01 5 131940656 131940656 T C RAD50 Missense_Mutation p.S895P 0.20 deleterious(0.04) benign(0.192) TCGA-OR-A5KB-01 5 132094183 132094183 T C SEPT8 Intron 0.16 TCGA-OR-A5KB-01 5 132160321 132160321 C A SHROOM1 Missense_Mutation p.Q409H 0.49 tolerated(0.12) benign(0.325) TCGA-OR-A5KB-01 5 134235224 134235224 T A TXNDC15 Missense_Mutation p.I311K 0.23 tolerated(0.82) benign(0.014) TCGA-OR-A5KB-01 5 134679300 134679300 A C C5orf66 3'UTR 0.42 TCGA-OR-A5KB-01 5 135207342 135207342 G C SLC25A48 Intron 0.23 TCGA-OR-A5KB-01 5 135692848 135692848 G C TRPC7 Nonsense_Mutation p.Y76* 0.15 TCGA-OR-A5KB-01 5 135692905 135692905 C A TRPC7 Silent p.P57P 0.21 TCGA-OR-A5KB-01 5 137089935 137089935 G T HNRNPA0 5'UTR 0.22 TCGA-OR-A5KB-01 5 13753344 13753344 G A DNAH5 Nonsense_Mutation p.Q3624* 0.27 TCGA-OR-A5KB-01 5 137802588 137802588 G T EGR1 Missense_Mutation p.W150C 0.15 deleterious(0.04) probably_damaging(0.926) TCGA-OR-A5KB-01 5 13841987 13841987 G C DNAH5 Silent p.S1766S 0.39 TCGA-OR-A5KB-01 5 140167127 140167127 C T PCDHA1 Silent p.L418L 0.24 TCGA-OR-A5KB-01 5 140176290 140176290 G C PCDHA2 Missense_Mutation p.V581L 0.23 tolerated_low_confidence(0.11) benign(0.214) TCGA-OR-A5KB-01 5 140181421 140181421 A T PCDHA3 Silent p.T213T 0.47 TCGA-OR-A5KB-01 5 140187138 140187138 G A PCDHA4 Silent p.E122E 0.24 TCGA-OR-A5KB-01 5 140208235 140208235 G A PCDHA6 Missense_Mutation p.D187N 0.22 deleterious_low_confidence(0.01) benign(0.017) TCGA-OR-A5KB-01 5 140223235 140223235 C A PCDHA8 Missense_Mutation p.P777T 0.20 deleterious_low_confidence(0.03) benign(0.15) TCGA-OR-A5KB-01 5 140233358 140233358 G T PCDHA9 Intron 0.39 TCGA-OR-A5KB-01 5 140237814 140237814 G T PCDHA10 Missense_Mutation p.E727D 0.53 tolerated_low_confidence(0.11) benign(0.02) TCGA-OR-A5KB-01 5 140240948 140240948 G A AC005609.1 3'UTR 0.42 TCGA-OR-A5KB-01 5 140249406 140249406 C A PCDHA11 Missense_Mutation p.P240T 0.42 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-OR-A5KB-01 5 140433080 140433080 G C PCDHB1 Missense_Mutation p.Q675H 0.48 tolerated(0.07) benign(0.001) TCGA-OR-A5KB-01 5 140502574 140502574 G A PCDHB4 Missense_Mutation p.V332I 0.39 tolerated_low_confidence(0.08) possibly_damaging(0.57) TCGA-OR-A5KB-01 5 140562215 140562215 C T PCDHB16 Silent p.G27G 0.36 TCGA-OR-A5KB-01 5 140562794 140562794 A T PCDHB16 Silent p.P220P 0.17 TCGA-OR-A5KB-01 5 140563800 140563800 G T PCDHB16 Missense_Mutation p.D556Y 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-OR-A5KB-01 5 140573502 140573502 C A PCDHB10 Missense_Mutation p.F459L 0.23 tolerated_low_confidence(0.27) benign(0.004) TCGA-OR-A5KB-01 5 140574448 140574448 G T PCDHB10 Missense_Mutation p.D775Y 0.38 deleterious_low_confidence(0) benign(0.107) TCGA-OR-A5KB-01 5 140591449 140591449 G A PCDHB12 3'UTR 0.22 TCGA-OR-A5KB-01 5 140595009 140595009 C G PCDHB13 Silent p.T438T 0.20 TCGA-OR-A5KB-01 5 140595284 140595284 G T PCDHB13 Missense_Mutation p.R530L 0.44 tolerated_low_confidence(0.12) benign(0.009) TCGA-OR-A5KB-01 5 140596959 140596959 A G PCDHB13 3'UTR 0.19 TCGA-OR-A5KB-01 5 140604121 140604121 C A PCDHB14 Silent p.T348T 0.14 TCGA-OR-A5KB-01 5 140625197 140625197 C A PCDHB15 Silent p.L17L 0.43 TCGA-OR-A5KB-01 5 140710828 140710828 G C PCDHGA1 Missense_Mutation p.E193Q 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-OR-A5KB-01 5 140720729 140720729 A T PCDHGA2 Missense_Mutation p.S731C 0.45 deleterious_low_confidence(0.01) benign(0.401) TCGA-OR-A5KB-01 5 140720802 140720802 A T PCDHGA2 Missense_Mutation p.H755L 0.43 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-OR-A5KB-01 5 140725478 140725478 G T PCDHGA3 Silent p.V626V 0.18 TCGA-OR-A5KB-01 5 140730366 140730366 A T PCDHGB1 Missense_Mutation p.K180M 0.28 deleterious(0.03) probably_damaging(0.964) TCGA-OR-A5KB-01 5 140731133 140731133 C A PCDHGB1 Missense_Mutation p.L436M 0.47 deleterious(0.01) probably_damaging(0.968) TCGA-OR-A5KB-01 5 140731260 140731260 G T PCDHGB1 Missense_Mutation p.G478V 0.57 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KB-01 5 140744142 140744142 G T PCDHGA5 Missense_Mutation p.G82V 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OR-A5KB-01 5 140745589 140745589 C T PCDHGA5 Silent p.Y564Y 0.41 TCGA-OR-A5KB-01 5 140753654 140753654 G T PCDHGA6 Missense_Mutation p.A2S 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-OR-A5KB-01 5 140762550 140762550 A G PCDHGA7 Silent p.A28A 0.23 TCGA-OR-A5KB-01 5 140773971 140773971 C A PCDHGA8 Missense_Mutation p.L531M 0.41 tolerated_low_confidence(0.21) benign(0.251) TCGA-OR-A5KB-01 5 140782720 140782720 C T PCDHGA9 Silent p.V67V 0.24 TCGA-OR-A5KB-01 5 140783342 140783342 G C PCDHGA9 Missense_Mutation p.G275R 0.20 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-OR-A5KB-01 5 140798387 140798387 G T PCDHGB7 Missense_Mutation p.A321S 0.16 deleterious(0) probably_damaging(0.947) TCGA-OR-A5KB-01 5 143541849 143541849 T A YIPF5 Missense_Mutation p.S182C 0.26 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 5 143853384 143853384 C G KCTD16 Missense_Mutation p.P332A 0.16 tolerated(0.2) probably_damaging(0.994) TCGA-OR-A5KB-01 5 145509683 145509683 C T LARS Silent p.G842G 0.48 TCGA-OR-A5KB-01 5 148406710 148406710 G T SH3TC2 Missense_Mutation p.A862D 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 5 148407036 148407036 C A SH3TC2 Silent p.R753R 0.20 TCGA-OR-A5KB-01 5 148745675 148745675 G T PCYOX1L Missense_Mutation p.R214L 0.48 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 5 149011699 149011699 G T ARHGEF37 Missense_Mutation p.G658V 0.28 deleterious(0.01) benign(0.199) TCGA-OR-A5KB-01 5 149505087 149505087 G C PDGFRB Silent p.G576G 0.27 TCGA-OR-A5KB-01 5 150565009 150565009 T A CCDC69 Missense_Mutation p.R197W 0.44 deleterious(0.02) possibly_damaging(0.753) TCGA-OR-A5KB-01 5 150696572 150696572 G C SLC36A2 Missense_Mutation p.L420V 0.28 deleterious(0) probably_damaging(0.983) TCGA-OR-A5KB-01 5 150696573 150696573 G T SLC36A2 Silent p.A419A 0.27 TCGA-OR-A5KB-01 5 150925322 150925322 G T FAT2 Missense_Mutation p.A1789D 0.50 probably_damaging(1) TCGA-OR-A5KB-01 5 151771635 151771635 G T NMUR2 3'UTR 0.23 TCGA-OR-A5KB-01 5 154393371 154393371 G T KIF4B 5'UTR 0.32 TCGA-OR-A5KB-01 5 154396953 154396953 G T KIF4B Silent p.V1178V 0.27 TCGA-OR-A5KB-01 5 156907950 156907950 G T ADAM19 3'UTR 0.26 TCGA-OR-A5KB-01 5 156997966 156997966 G A ADAM19 Silent p.P39P 0.43 TCGA-OR-A5KB-01 5 158139314 158139314 G T EBF1 Nonsense_Mutation p.S466* 0.43 TCGA-OR-A5KB-01 5 15928111 15928111 C A FBXL7 Silent p.I80I 0.37 TCGA-OR-A5KB-01 5 15928344 15928344 G T FBXL7 Missense_Mutation p.R158L 0.35 tolerated(0.12) possibly_damaging(0.474) TCGA-OR-A5KB-01 5 15928373 15928373 C T FBXL7 Missense_Mutation p.R168C 0.36 deleterious(0.01) probably_damaging(0.985) TCGA-OR-A5KB-01 5 161322775 161322775 C G GABRA1 Missense_Mutation p.C320W 0.48 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 5 161576148 161576148 C G GABRG2 Missense_Mutation p.S359R 0.22 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 5 161580382 161580382 T A GABRG2 3'UTR 0.33 TCGA-OR-A5KB-01 5 161580383 161580383 G T GABRG2 3'UTR 0.34 TCGA-OR-A5KB-01 5 162869514 162869514 G A CCNG1 Silent p.L277L 0.36 TCGA-OR-A5KB-01 5 162918222 162918222 G T HMMR 3'UTR 0.09 TCGA-OR-A5KB-01 5 167645293 167645293 G T TENM2 Missense_Mutation p.S1466I 0.33 deleterious(0.02) possibly_damaging(0.756) TCGA-OR-A5KB-01 5 169141144 169141144 G T DOCK2 Missense_Mutation p.G591V 0.56 tolerated(0.08) benign(0.423) TCGA-OR-A5KB-01 5 169310385 169310385 C G FAM196B Missense_Mutation p.R173T 0.39 tolerated(0.12) possibly_damaging(0.494) TCGA-OR-A5KB-01 5 16935962 16935962 C A MYO10 5'UTR 0.47 TCGA-OR-A5KB-01 5 169461501 169461501 G T DOCK2 Missense_Mutation p.R1189L 0.51 deleterious(0) probably_damaging(0.971) TCGA-OR-A5KB-01 5 169533089 169533089 G T FOXI1 Missense_Mutation p.S43I 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-OR-A5KB-01 5 169810783 169810783 T C KCNMB1 Missense_Mutation p.K69R 0.30 tolerated(0.57) benign(0.032) TCGA-OR-A5KB-01 5 170215606 170215606 A G GABRP 5'UTR 0.37 TCGA-OR-A5KB-01 5 170215607 170215607 G A GABRP 5'UTR 0.37 TCGA-OR-A5KB-01 5 170736778 170736778 G A TLX3 Missense_Mutation p.D137N 0.34 deleterious(0.03) benign(0.179) TCGA-OR-A5KB-01 5 172342680 172342680 G A ERGIC1 Intron 0.43 TCGA-OR-A5KB-01 5 176070253 176070253 C A EIF4E1B Missense_Mutation p.H62Q 0.44 deleterious(0) probably_damaging(0.945) TCGA-OR-A5KB-01 5 178770799 178770799 G T ADAMTS2 Missense_Mutation p.S168Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 5 179069972 179069972 G T C5orf60 Missense_Mutation p.S194Y 0.41 deleterious(0) probably_damaging(0.919) TCGA-OR-A5KB-01 5 179195985 179195985 G T MAML1 Missense_Mutation p.K622N 0.35 deleterious(0) probably_damaging(0.986) TCGA-OR-A5KB-01 5 179565170 179565170 C A RASGEF1C 5'UTR 0.62 TCGA-OR-A5KB-01 5 19473645 19473645 C A CDH18 Missense_Mutation p.R688L 0.35 deleterious(0.01) possibly_damaging(0.733) TCGA-OR-A5KB-01 5 21461930 21461930 G C GUSBP1 RNA 0.14 TCGA-OR-A5KB-01 5 21751818 21751818 C A CDH12 3'UTR 0.23 TCGA-OR-A5KB-01 5 21755941 21755941 C G CDH12 Silent p.A548A 0.30 TCGA-OR-A5KB-01 5 21783535 21783535 G T CDH12 Missense_Mutation p.A442D 0.33 tolerated(0.2) benign(0.355) TCGA-OR-A5KB-01 5 21854885 21854885 G A CDH12 Nonsense_Mutation p.Q181* 0.34 TCGA-OR-A5KB-01 5 23524575 23524575 C A PRDM9 Nonsense_Mutation p.Y361* 0.37 TCGA-OR-A5KB-01 5 23526532 23526532 C A PRDM9 Missense_Mutation p.H445Q 0.30 tolerated(0.39) benign(0.005) TCGA-OR-A5KB-01 5 23527437 23527437 C A PRDM9 Missense_Mutation p.P747H 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-OR-A5KB-01 5 31318113 31318113 C A CDH6 Intron 0.52 TCGA-OR-A5KB-01 5 33576158 33576158 C A ADAMTS12 Splice_Site p.X1324_splice 0.38 TCGA-OR-A5KB-01 5 33576501 33576501 C T ADAMTS12 Nonsense_Mutation p.W1210* 0.39 TCGA-OR-A5KB-01 5 33658359 33658359 G T ADAMTS12 Missense_Mutation p.R374S 0.36 deleterious(0) probably_damaging(0.963) TCGA-OR-A5KB-01 5 33751563 33751563 C A ADAMTS12 Missense_Mutation p.V194F 0.35 deleterious(0) possibly_damaging(0.677) TCGA-OR-A5KB-01 5 35968210 35968210 G C UGT3A1 Nonsense_Mutation p.Y74* 0.38 TCGA-OR-A5KB-01 5 36035641 36035641 G T UGT3A2 3'UTR 0.48 TCGA-OR-A5KB-01 5 37000491 37000491 T C NIPBL Silent p.H1107H 0.14 TCGA-OR-A5KB-01 5 37107729 37107729 G C C5orf42 Missense_Mutation p.S3190C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.906) TCGA-OR-A5KB-01 5 38418309 38418309 G C EGFLAM Missense_Mutation p.D546H 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5KB-01 5 38881777 38881777 A T OSMR Missense_Mutation p.H110L 0.42 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 5 39202214 39202215 - T FYB Frame_Shift_Ins p.E294Gfs*3 0.31 TCGA-OR-A5KB-01 5 39308382 39308382 C A C9 Missense_Mutation p.G397V 0.36 tolerated(0.21) benign(0.216) TCGA-OR-A5KB-01 5 39394497 39394497 C A DAB2 5'UTR 0.25 TCGA-OR-A5KB-01 5 40692043 40692043 A T PTGER4 Missense_Mutation p.I344F 0.36 deleterious(0.03) possibly_damaging(0.602) TCGA-OR-A5KB-01 5 40841514 40841514 C G CARD6 Missense_Mutation p.I10M 0.40 deleterious(0) probably_damaging(0.953) TCGA-OR-A5KB-01 5 45262200 45262200 C A HCN1 Missense_Mutation p.R832S 0.34 tolerated_low_confidence(0.12) benign(0.055) TCGA-OR-A5KB-01 5 45262201 45262201 C A HCN1 Missense_Mutation p.R832M 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.52) TCGA-OR-A5KB-01 5 45353216 45353216 C A HCN1 Missense_Mutation p.D455Y 0.36 deleterious(0) probably_damaging(0.939) TCGA-OR-A5KB-01 5 50679354 50679354 G T ISL1 5'UTR 0.28 TCGA-OR-A5KB-01 5 52368469 52368469 G T ITGA2 Missense_Mutation p.E791D 0.18 tolerated(0.66) benign(0.002) TCGA-OR-A5KB-01 5 54275030 54275030 C A ESM1 3'UTR 0.24 TCGA-OR-A5KB-01 5 54457048 54457048 G T GPX8 Missense_Mutation p.G144V 0.24 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 5 5460966 5460966 G T KIAA0947 Missense_Mutation p.G507C 0.36 deleterious(0.02) possibly_damaging(0.717) TCGA-OR-A5KB-01 5 5462358 5462358 A T KIAA0947 Missense_Mutation p.I971F 0.38 tolerated(0.1) benign(0.207) TCGA-OR-A5KB-01 5 5466585 5466585 C G KIAA0947 Missense_Mutation p.R2011G 0.14 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 5 56778494 56778494 C T ACTBL2 Missense_Mutation p.G14E 0.45 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-OR-A5KB-01 5 56778545 56778545 G T ACTBL2 5'UTR 0.24 TCGA-OR-A5KB-01 5 59893517 59893517 C A DEPDC1B 3'UTR 0.24 TCGA-OR-A5KB-01 5 61876613 61876613 G A LRRC70 Missense_Mutation p.E450K 0.43 tolerated(0.96) benign(0.012) TCGA-OR-A5KB-01 5 64747376 64747376 G C ADAMTS6 Silent p.L333L 0.11 TCGA-OR-A5KB-01 5 64755998 64755998 C A ADAMTS6 Silent p.S210S 0.25 TCGA-OR-A5KB-01 5 72199544 72199545 - T TNPO1 Frame_Shift_Ins p.C844Lfs*2 0.50 TCGA-OR-A5KB-01 5 76129178 76129178 G T F2RL1 Missense_Mutation p.G249V 0.23 tolerated(1) benign(0.155) TCGA-OR-A5KB-01 5 76173537 76173537 G T S100Z Missense_Mutation p.Q60H 0.17 deleterious(0.01) benign(0.001) TCGA-OR-A5KB-01 5 77806042 77806042 T A LHFPL2 5'UTR 0.44 TCGA-OR-A5KB-01 5 78944447 78944447 G T PAPD4 Nonsense_Mutation p.E277* 0.18 TCGA-OR-A5KB-01 5 79025201 79025201 A G CMYA5 Missense_Mutation p.T205A 0.15 possibly_damaging(0.636) TCGA-OR-A5KB-01 5 79031613 79031613 A T CMYA5 Missense_Mutation p.D2342V 0.25 benign(0.383) TCGA-OR-A5KB-01 5 79366521 79366521 T G THBS4 Missense_Mutation p.I503S 0.22 deleterious(0.03) benign(0.137) TCGA-OR-A5KB-01 5 81046981 81046981 C A SSBP2 5'UTR 0.28 TCGA-OR-A5KB-01 5 82785935 82785935 C A VCAN Missense_Mutation p.P30Q 0.24 deleterious(0) probably_damaging(0.934) TCGA-OR-A5KB-01 5 82808022 82808022 C A VCAN Silent p.L283L 0.48 TCGA-OR-A5KB-01 5 82832740 82832740 G T VCAN Intron 0.68 TCGA-OR-A5KB-01 5 83356153 83356153 G A EDIL3 Missense_Mutation p.T368I 0.14 deleterious(0.01) possibly_damaging(0.803) TCGA-OR-A5KB-01 5 88047710 88047710 C G MEF2C Missense_Mutation p.G203R 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 5 9154783 9154783 C A SEMA5A Missense_Mutation p.R433L 0.29 tolerated(1) benign(0.009) TCGA-OR-A5KB-01 5 9202086 9202086 C A SEMA5A Missense_Mutation p.G305C 0.32 deleterious(0) probably_damaging(0.954) TCGA-OR-A5KB-01 5 93077152 93077152 C A POU5F2 Missense_Mutation p.A40S 0.46 tolerated(0.11) benign(0.364) TCGA-OR-A5KB-01 5 93077153 93077153 C A POU5F2 Silent p.A39A 0.45 TCGA-OR-A5KB-01 5 93805738 93805738 G A KIAA0825 Silent p.V600V 0.16 TCGA-OR-A5KB-01 5 94027837 94027837 C A ANKRD32 Silent p.V857V 0.24 TCGA-OR-A5KB-01 5 94206155 94206155 C A MCTP1 Missense_Mutation p.K761N 0.44 deleterious(0.02) probably_damaging(0.99) TCGA-OR-A5KB-01 5 94727146 94727146 C T FAM81B Missense_Mutation p.S18L 0.20 tolerated_low_confidence(0.56) benign(0.008) TCGA-OR-A5KB-01 5 94772570 94772570 C T FAM81B Nonsense_Mutation p.Q285* 0.46 TCGA-OR-A5KB-01 5 94800240 94800240 G A TTC37 3'UTR 0.50 TCGA-OR-A5KB-01 5 94852291 94852291 C T TTC37 Splice_Site p.X839_splice 0.48 TCGA-OR-A5KB-01 5 94901701 94901701 G T ARSK Splice_Site p.X43_splice 0.19 TCGA-OR-A5KB-01 5 95018555 95018555 G C SPATA9 Missense_Mutation p.P2A 0.40 tolerated(0.09) benign(0.002) TCGA-OR-A5KB-01 5 95018658 95018658 C A SPATA9 5'UTR 0.16 TCGA-OR-A5KB-01 6 100062487 100062487 T A PRDM13 Missense_Mutation p.L659H 0.41 tolerated(0.5) benign(0.006) TCGA-OR-A5KB-01 6 100382334 100382334 C A MCHR2 Missense_Mutation p.C216F 0.37 tolerated(0.45) possibly_damaging(0.857) TCGA-OR-A5KB-01 6 102124584 102124584 G C GRIK2 Missense_Mutation p.D210H 0.39 deleterious(0) probably_damaging(0.956) TCGA-OR-A5KB-01 6 10415108 10415108 G A TFAP2A Intron 0.40 TCGA-OR-A5KB-01 6 108041954 108041954 G A SCML4 Missense_Mutation p.A309V 0.31 tolerated(0.13) benign(0.001) TCGA-OR-A5KB-01 6 108068044 108068044 C T SCML4 Silent p.R112R 0.32 TCGA-OR-A5KB-01 6 108508767 108508767 C A NR2E1 3'UTR 0.20 TCGA-OR-A5KB-01 6 108508771 108508771 G T NR2E1 3'UTR 0.33 TCGA-OR-A5KB-01 6 108677903 108677903 G C LACE1 Missense_Mutation p.R176P 0.13 deleterious(0.02) possibly_damaging(0.763) TCGA-OR-A5KB-01 6 109703621 109703621 C G CD164 5'UTR 0.37 TCGA-OR-A5KB-01 6 111580887 111580887 G T KIAA1919 5'UTR 0.63 TCGA-OR-A5KB-01 6 112375568 112375568 G T WISP3 Missense_Mutation p.G21V 0.35 tolerated(0.15) benign(0.097) TCGA-OR-A5KB-01 6 114378755 114378755 T A HS3ST5 Missense_Mutation p.K236I 0.38 tolerated(0.5) benign(0.063) TCGA-OR-A5KB-01 6 114379130 114379130 T G HS3ST5 Missense_Mutation p.N111T 0.09 tolerated(0.11) possibly_damaging(0.52) TCGA-OR-A5KB-01 6 117116966 117116966 A G GPRC6A Silent p.S527S 0.35 TCGA-OR-A5KB-01 6 117130541 117130541 C A GPRC6A Missense_Mutation p.G145V 0.45 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 6 117709087 117709087 G A ROS1 Missense_Mutation p.H624Y 0.31 tolerated(0.32) benign(0.001) TCGA-OR-A5KB-01 6 121563361 121563361 C A TBC1D32 Missense_Mutation p.A715S 0.25 tolerated(0.5) benign(0.026) TCGA-OR-A5KB-01 6 124979429 124979429 C T NKAIN2 Missense_Mutation p.P124L 0.40 tolerated(0.21) probably_damaging(0.999) TCGA-OR-A5KB-01 6 129641765 129641765 G T LAMA2 Missense_Mutation p.D1381Y 0.32 tolerated(0.22) probably_damaging(0.954) TCGA-OR-A5KB-01 6 129766860 129766860 G T LAMA2 Missense_Mutation p.R2108L 0.40 tolerated(1) possibly_damaging(0.878) TCGA-OR-A5KB-01 6 130761684 130761684 C G TMEM200A Silent p.P39P 0.44 TCGA-OR-A5KB-01 6 130762826 130762826 C A TMEM200A Missense_Mutation p.P420H 0.38 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 6 130762909 130762909 G T TMEM200A Missense_Mutation p.V448F 0.38 deleterious(0.03) benign(0.017) TCGA-OR-A5KB-01 6 132910041 132910041 A T TAAR5 Missense_Mutation p.L262H 0.40 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 6 132910108 132910108 G T TAAR5 Missense_Mutation p.L240M 0.40 tolerated(0.21) possibly_damaging(0.587) TCGA-OR-A5KB-01 6 133032885 133032885 G A VNN1 Missense_Mutation p.P102S 0.23 deleterious(0.04) possibly_damaging(0.624) TCGA-OR-A5KB-01 6 133836501 133836501 G T EYA4 Missense_Mutation p.R515M 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 6 135754223 135754223 C A AHI1 Missense_Mutation p.L736F 0.33 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 6 135754324 135754324 C A AHI1 Missense_Mutation p.A703S 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5KB-01 6 136599766 136599766 C A BCLAF1 Nonsense_Mutation p.G85* 0.10 TCGA-OR-A5KB-01 6 139563551 139563551 C G TXLNB 3'UTR 0.41 TCGA-OR-A5KB-01 6 139563758 139563758 G T TXLNB Missense_Mutation p.P654T 0.18 deleterious_low_confidence(0.03) benign(0.029) TCGA-OR-A5KB-01 6 142691775 142691775 G T GPR126 Missense_Mutation p.G305V 0.36 deleterious(0) probably_damaging(0.954) TCGA-OR-A5KB-01 6 143749780 143749780 T C ADAT2 Silent p.L167L 0.41 TCGA-OR-A5KB-01 6 146350590 146350590 G T GRM1 5'UTR 0.38 TCGA-OR-A5KB-01 6 151672276 151672276 C T AKAP12 Missense_Mutation p.S917L 0.20 deleterious(0.02) benign(0.039) TCGA-OR-A5KB-01 6 151917690 151917690 T A CCDC170 Missense_Mutation p.L563Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 6 152201872 152201872 C G ESR1 Silent p.L242L 0.39 TCGA-OR-A5KB-01 6 152647669 152647669 C - SYNE1 Frame_Shift_Del p.A5019Qfs*5 0.22 TCGA-OR-A5KB-01 6 152737529 152737529 G A SYNE1 Nonsense_Mutation p.Q2015* 0.34 TCGA-OR-A5KB-01 6 152793441 152793441 G C SYNE1 Silent p.A486A 0.30 TCGA-OR-A5KB-01 6 153042879 153042879 G T MYCT1 Missense_Mutation p.D67Y 0.47 deleterious(0.01) probably_damaging(0.931) TCGA-OR-A5KB-01 6 153078314 153078314 C A VIP 3'UTR 0.32 TCGA-OR-A5KB-01 6 154587053 154587053 C A IPCEF1 Missense_Mutation p.S10I 0.38 tolerated(0.12) benign(0.101) TCGA-OR-A5KB-01 6 155450837 155450837 A T TIAM2 Silent p.R160R 0.33 TCGA-OR-A5KB-01 6 155458506 155458506 C G TIAM2 Missense_Mutation p.R464G 0.29 deleterious(0) possibly_damaging(0.72) TCGA-OR-A5KB-01 6 155764494 155764494 C A NOX3 Missense_Mutation p.E133D 0.39 tolerated(0.6) benign(0.049) TCGA-OR-A5KB-01 6 157505500 157505500 G T ARID1B Nonsense_Mutation p.E1161* 0.40 TCGA-OR-A5KB-01 6 159401950 159401950 G A RSPH3 Nonsense_Mutation p.Q381* 0.32 TCGA-OR-A5KB-01 6 159646610 159646610 T A FNDC1 Missense_Mutation p.W310R 0.33 deleterious(0) unknown(0) TCGA-OR-A5KB-01 6 160468851 160468852 CG T IGF2R Frame_Shift_Del p.R753Cfs*16 0.31 TCGA-OR-A5KB-01 6 161134147 161134147 T A PLG Silent p.L179L 0.32 TCGA-OR-A5KB-01 6 161966303 161966303 C T PARK2 Intron 0.30 TCGA-OR-A5KB-01 6 161966363 161966363 T A PARK2 Intron 0.44 TCGA-OR-A5KB-01 6 16328522 16328522 C A ATXN1 Missense_Mutation p.R7L 0.19 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 6 165801852 165801852 C A PDE10A Missense_Mutation p.A583S 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-OR-A5KB-01 6 166580287 166580287 G T T Nonsense_Mutation p.Y88* 0.35 TCGA-OR-A5KB-01 6 167721323 167721323 G T UNC93A Missense_Mutation p.D345Y 0.35 deleterious(0.01) benign(0.287) TCGA-OR-A5KB-01 6 167755029 167755029 A T TTLL2 Missense_Mutation p.K547N 0.33 tolerated(0.13) benign(0.003) TCGA-OR-A5KB-01 6 168442775 168442775 C T KIF25 Missense_Mutation p.A258V 0.14 tolerated(0.58) benign(0.005) TCGA-OR-A5KB-01 6 169629675 169629675 C A THBS2 Missense_Mutation p.D751Y 0.31 deleterious(0.03) possibly_damaging(0.714) TCGA-OR-A5KB-01 6 21000542 21000542 G T CDKAL1 Nonsense_Mutation p.E332* 0.29 TCGA-OR-A5KB-01 6 24146192 24146192 T C NRSN1 3'UTR 0.33 TCGA-OR-A5KB-01 6 24473883 24473883 C A GPLD1 Missense_Mutation p.G152C 0.56 deleterious(0) probably_damaging(0.991) TCGA-OR-A5KB-01 6 25918769 25918769 C G SLC17A2 Missense_Mutation p.V199L 0.34 tolerated(0.32) benign(0.013) TCGA-OR-A5KB-01 6 26124666 26124666 A T HIST1H2AC Missense_Mutation p.N69I 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5KB-01 6 26252078 26252078 T A HIST1H2BH Missense_Mutation p.V67D 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-OR-A5KB-01 6 26451901 26451901 A T BTN3A3 Splice_Site p.X340_splice 0.30 TCGA-OR-A5KB-01 6 27783029 27783029 A T HIST1H2BM Missense_Mutation p.I70F 0.30 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-OR-A5KB-01 6 28829324 28829324 C A XXbac-BPG308K3.6 RNA 0.36 TCGA-OR-A5KB-01 6 29581230 29581230 C A GABBR1 Missense_Mutation p.K452N 0.34 tolerated(0.16) benign(0.243) TCGA-OR-A5KB-01 6 30104700 30104700 G T TRIM40 5'Flank 0.27 TCGA-OR-A5KB-01 6 30104702 30104702 C T TRIM40 5'Flank 0.46 TCGA-OR-A5KB-01 6 30126189 30126189 C A TRIM10 Missense_Mutation p.R248M 0.25 deleterious(0.05) possibly_damaging(0.599) TCGA-OR-A5KB-01 6 30882536 30882536 G T VARS2 Intron 0.41 TCGA-OR-A5KB-01 6 3140673 3140673 C A BPHL Missense_Mutation p.H240N 0.44 deleterious(0.02) possibly_damaging(0.905) TCGA-OR-A5KB-01 6 31474946 31474946 G C MICB Missense_Mutation p.G254A 0.17 tolerated(0.11) benign(0.257) TCGA-OR-A5KB-01 6 31627653 31627653 C A C6orf47 Silent p.P24P 0.35 TCGA-OR-A5KB-01 6 31681633 31681633 C A LY6G6E 5'Flank 0.31 TCGA-OR-A5KB-01 6 31759413 31759413 G A VARS Silent p.N358N 0.17 TCGA-OR-A5KB-01 6 31922485 31922485 C T NELFE Missense_Mutation p.D197N 0.35 tolerated_low_confidence(0.36) unknown(0) TCGA-OR-A5KB-01 6 31926215 31926215 C T NELFE Silent p.V3V 0.43 TCGA-OR-A5KB-01 6 32729575 32729575 G C HLA-DQB2 Missense_Mutation p.Q76E 0.37 tolerated(0.08) benign(0.065) TCGA-OR-A5KB-01 6 32729576 32729576 G T HLA-DQB2 Missense_Mutation p.F75L 0.37 deleterious(0.01) possibly_damaging(0.482) TCGA-OR-A5KB-01 6 33154287 33154287 G A COL11A2 Intron 0.48 TCGA-OR-A5KB-01 6 33164382 33164382 C A RXRB Silent p.A274A 0.22 TCGA-OR-A5KB-01 6 33283358 33283358 C A ZBTB22 Missense_Mutation p.G446W 0.36 deleterious(0) probably_damaging(0.973) TCGA-OR-A5KB-01 6 33381015 33381015 G C PHF1 Missense_Mutation p.G127A 0.45 tolerated(0.58) benign(0.18) TCGA-OR-A5KB-01 6 34101175 34101175 C A GRM4 Missense_Mutation p.K33N 0.36 tolerated(0.12) possibly_damaging(0.603) TCGA-OR-A5KB-01 6 37225576 37225576 G A TBC1D22B 5'UTR 0.25 TCGA-OR-A5KB-01 6 38890846 38890846 G T DNAH8 Missense_Mutation p.D3342Y 0.24 probably_damaging(0.996) TCGA-OR-A5KB-01 6 39162077 39162077 C A KCNK5 Missense_Mutation p.V168L 0.34 tolerated(1) benign(0.006) TCGA-OR-A5KB-01 6 39284652 39284652 C A KCNK16 Missense_Mutation p.M189I 0.35 tolerated(0.21) benign(0.016) TCGA-OR-A5KB-01 6 39851832 39851832 A T DAAM2 Missense_Mutation p.Y647F 0.45 deleterious(0.03) probably_damaging(0.997) TCGA-OR-A5KB-01 6 401669 401669 C T IRF4 Nonsense_Mutation p.Q331* 0.36 TCGA-OR-A5KB-01 6 40359771 40359771 C T LRFN2 Missense_Mutation p.G761S 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-OR-A5KB-01 6 41555166 41555166 C G FOXP4 Missense_Mutation p.A263G 0.13 tolerated(0.15) benign(0.049) TCGA-OR-A5KB-01 6 43038449 43038449 C G KLC4 Missense_Mutation p.P352R 0.38 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 6 43266402 43266402 G C SLC22A7 Silent p.G102G 0.42 TCGA-OR-A5KB-01 6 43472938 43472938 G T TJAP1 Missense_Mutation p.R340L 0.30 deleterious(0) possibly_damaging(0.532) TCGA-OR-A5KB-01 6 43488718 43488718 G T POLR1C Missense_Mutation p.R285I 0.36 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KB-01 6 46657182 46657182 G A TDRD6 Silent p.S439S 0.41 TCGA-OR-A5KB-01 6 46677128 46677128 C A PLA2G7 Missense_Mutation p.V269L 0.21 tolerated(0.08) benign(0.025) TCGA-OR-A5KB-01 6 46717703 46717703 G C ANKRD66 Missense_Mutation p.R47T 0.17 deleterious_low_confidence(0.02) benign(0.003) TCGA-OR-A5KB-01 6 47649787 47649793 GCAGATG TGTGGTGA GPR111 Frame_Shift_Ins p.A498Cfs*12 0.18 TCGA-OR-A5KB-01 6 4954182 4954182 G T CDYL Silent p.L509L 0.30 TCGA-OR-A5KB-01 6 49574560 49574560 C T RHAG Splice_Site p.X404_splice 0.39 TCGA-OR-A5KB-01 6 49701562 49701562 C A CRISP3 Splice_Site p.X116_splice 0.40 TCGA-OR-A5KB-01 6 49754711 49754711 G C PGK2 Missense_Mutation p.L64V 0.34 deleterious(0.01) possibly_damaging(0.58) TCGA-OR-A5KB-01 6 49936521 49936521 C A DEFB113 Missense_Mutation p.G40C 0.36 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OR-A5KB-01 6 51774097 51774097 C A PKHD1 Silent p.L2222L 0.30 TCGA-OR-A5KB-01 6 51907711 51907711 G T PKHD1 Missense_Mutation p.L1015I 0.29 deleterious(0.01) possibly_damaging(0.905) TCGA-OR-A5KB-01 6 51907765 51907765 T A PKHD1 Missense_Mutation p.M997L 0.41 tolerated(1) benign(0.016) TCGA-OR-A5KB-01 6 51908447 51908447 C A PKHD1 Missense_Mutation p.V933F 0.36 deleterious(0) probably_damaging(0.956) TCGA-OR-A5KB-01 6 52141266 52141266 G A MCM3 Missense_Mutation p.R437C 0.43 deleterious(0.02) benign(0.226) TCGA-OR-A5KB-01 6 53409375 53409375 C A GCLC Silent p.R23R 0.35 TCGA-OR-A5KB-01 6 54791229 54791229 G T FAM83B Missense_Mutation p.A169S 0.35 deleterious(0.02) possibly_damaging(0.687) TCGA-OR-A5KB-01 6 55039342 55039342 G C HCRTR2 5'UTR 0.28 TCGA-OR-A5KB-01 6 56426291 56426291 C A DST Missense_Mutation p.G2086C 0.39 probably_damaging(1) TCGA-OR-A5KB-01 6 56468904 56468904 C A DST Intron 0.32 TCGA-OR-A5KB-01 6 56480710 56480710 G A DST Intron 0.34 TCGA-OR-A5KB-01 6 56495106 56495106 C A DST Silent p.L869L 0.16 TCGA-OR-A5KB-01 6 56965611 56965611 G T ZNF451 Intron 0.31 TCGA-OR-A5KB-01 6 62407105 62407105 C A KHDRBS2 Missense_Mutation p.S316I 0.27 deleterious(0) possibly_damaging(0.462) TCGA-OR-A5KB-01 6 65300987 65300987 C A EYS Silent p.A1591A 0.29 TCGA-OR-A5KB-01 6 65655797 65655797 C G EYS Missense_Mutation p.C757S 0.29 deleterious(0.01) possibly_damaging(0.895) TCGA-OR-A5KB-01 6 66053984 66053984 C G EYS Missense_Mutation p.D516H 0.34 tolerated(0.12) benign(0.001) TCGA-OR-A5KB-01 6 69943298 69943298 C A BAI3 Missense_Mutation p.P866H 0.32 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 6 70639346 70639346 G T COL19A1 Missense_Mutation p.K140N 0.37 deleterious(0) unknown(0) TCGA-OR-A5KB-01 6 70926521 70926521 C A COL9A1 3'UTR 0.35 TCGA-OR-A5KB-01 6 70981789 70981789 G T COL9A1 Silent p.G356G 0.26 TCGA-OR-A5KB-01 6 71665781 71665781 C A B3GAT2 Missense_Mutation p.D118Y 0.35 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 6 74072990 74072990 G T KHDC3L Missense_Mutation p.Q114H 0.36 deleterious(0.02) possibly_damaging(0.537) TCGA-OR-A5KB-01 6 7579564 7579564 C A DSP Silent p.A1047A 0.32 TCGA-OR-A5KB-01 6 75814965 75814965 C A COL12A1 Missense_Mutation p.C2741F 0.35 probably_damaging(0.996) TCGA-OR-A5KB-01 6 80744821 80744821 A G TTK Silent p.L578L 0.42 TCGA-OR-A5KB-01 6 84290239 84290239 G T SNAP91 Silent p.P743P 0.40 TCGA-OR-A5KB-01 6 85446831 85446831 C A TBX18 Missense_Mutation p.V466L 0.35 tolerated(0.85) benign(0.037) TCGA-OR-A5KB-01 6 87725124 87725124 C G HTR1E Silent p.L24L 0.39 TCGA-OR-A5KB-01 6 88279286 88279286 G A RARS2 Missense_Mutation p.P20L 0.16 deleterious(0.01) benign(0.408) TCGA-OR-A5KB-01 6 89827555 89827555 C A SRSF12 Missense_Mutation p.A18S 0.40 tolerated(0.55) benign(0.007) TCGA-OR-A5KB-01 6 90660573 90660573 C G BACH2 Missense_Mutation p.A418P 0.30 tolerated(0.11) benign(0.004) TCGA-OR-A5KB-01 6 91233443 91233443 T A MAP3K7 Silent p.S472S 0.46 TCGA-OR-A5KB-01 6 96655400 96655400 G T FUT9 3'UTR 0.51 TCGA-OR-A5KB-01 6 96656346 96656346 A T FUT9 3'UTR 0.47 TCGA-OR-A5KB-01 6 96657990 96657990 C A FUT9 3'UTR 0.24 TCGA-OR-A5KB-01 6 96658723 96658723 G A FUT9 3'UTR 0.27 TCGA-OR-A5KB-01 6 96662326 96662326 C A FUT9 3'UTR 0.38 TCGA-OR-A5KB-01 6 96663326 96663326 G T FUT9 3'UTR 0.48 TCGA-OR-A5KB-01 6 96999750 96999750 G T UFL1 Missense_Mutation p.A646S 0.28 tolerated(0.35) benign(0.023) TCGA-OR-A5KB-01 6 97599708 97599708 C T MMS22L Missense_Mutation p.V1141I 0.25 tolerated(0.12) benign(0.117) TCGA-OR-A5KB-01 7 100320745 100320745 G A EPO Missense_Mutation p.G191R 0.35 tolerated(0.12) benign(0.042) TCGA-OR-A5KB-01 7 100320746 100320746 G T EPO Missense_Mutation p.G191V 0.36 tolerated(0.06) benign(0.071) TCGA-OR-A5KB-01 7 100855544 100855544 C A PLOD3 Missense_Mutation p.D373Y 0.36 deleterious(0) possibly_damaging(0.535) TCGA-OR-A5KB-01 7 100855545 100855545 C T PLOD3 Silent p.R372R 0.35 TCGA-OR-A5KB-01 7 101259519 101259519 C A MYL10 Missense_Mutation p.G172C 0.32 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 101844740 101844740 G T CUX1 Missense_Mutation p.Q732H 0.37 deleterious(0.03) unknown(0) TCGA-OR-A5KB-01 7 103163855 103163855 G C RELN Missense_Mutation p.C2491W 0.30 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 103193993 103193993 A G RELN Missense_Mutation p.M1996T 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-OR-A5KB-01 7 103848391 103848391 C A ORC5 5'UTR 0.35 TCGA-OR-A5KB-01 7 106509035 106509035 C A PIK3CG Silent p.G343G 0.36 TCGA-OR-A5KB-01 7 107408071 107408071 C G SLC26A3 Missense_Mutation p.D742H 0.11 tolerated(0.17) benign(0.014) TCGA-OR-A5KB-01 7 107431510 107431510 G C SLC26A3 Missense_Mutation p.L185V 0.34 deleterious(0.01) benign(0.107) TCGA-OR-A5KB-01 7 107643389 107643389 C A LAMB1 5'UTR 0.33 TCGA-OR-A5KB-01 7 107684339 107684339 G T LAMB4 Silent p.I1443I 0.31 TCGA-OR-A5KB-01 7 107816985 107816985 G T NRCAM Missense_Mutation p.T1014N 0.33 deleterious(0) possibly_damaging(0.609) TCGA-OR-A5KB-01 7 107880406 107880406 C A NRCAM Missense_Mutation p.D35Y 0.34 deleterious(0) probably_damaging(0.971) TCGA-OR-A5KB-01 7 108119816 108119816 C A PNPLA8 Missense_Mutation p.G629V 0.27 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 7 11419313 11419313 C T THSD7A Missense_Mutation p.D1512N 0.23 tolerated(0.32) benign(0.199) TCGA-OR-A5KB-01 7 11419314 11419314 A C THSD7A Silent p.P1511P 0.23 TCGA-OR-A5KB-01 7 11419315 11419315 G A THSD7A Missense_Mutation p.P1511L 0.23 deleterious(0.04) probably_damaging(0.993) TCGA-OR-A5KB-01 7 114294061 114294061 A T FOXP2 Missense_Mutation p.K446N 0.29 deleterious(0.04) unknown(0) TCGA-OR-A5KB-01 7 11581087 11581087 G C THSD7A Missense_Mutation p.P594R 0.22 tolerated(0.1) benign(0.258) TCGA-OR-A5KB-01 7 11676331 11676331 C - THSD7A Frame_Shift_Del p.E150Kfs*6 0.16 TCGA-OR-A5KB-01 7 117062373 117062373 G A ASZ1 Silent p.P82P 0.35 TCGA-OR-A5KB-01 7 117864956 117864956 G T ANKRD7 Missense_Mutation p.K24N 0.33 deleterious(0.02) benign(0.075) TCGA-OR-A5KB-01 7 119914836 119914836 C A KCND2 Silent p.T50T 0.35 TCGA-OR-A5KB-01 7 120770181 120770181 C A CPED1 Silent p.L470L 0.32 TCGA-OR-A5KB-01 7 121624143 121624143 C G PTPRZ1 Nonsense_Mutation p.Y300* 0.32 TCGA-OR-A5KB-01 7 122757584 122757584 C A SLC13A1 Missense_Mutation p.V531L 0.41 deleterious(0.02) possibly_damaging(0.58) TCGA-OR-A5KB-01 7 123270074 123270074 C A ASB15 Missense_Mutation p.R499S 0.30 deleterious(0.03) possibly_damaging(0.804) TCGA-OR-A5KB-01 7 12396973 12396973 C G VWDE Missense_Mutation p.W1148S 0.32 deleterious(0) probably_damaging(0.973) TCGA-OR-A5KB-01 7 12409933 12409933 C T VWDE Missense_Mutation p.V667I 0.16 tolerated(0.29) benign(0.015) TCGA-OR-A5KB-01 7 126079151 126079151 C T GRM8 3'UTR 0.31 TCGA-OR-A5KB-01 7 126544129 126544129 C A GRM8 Missense_Mutation p.W305C 0.47 deleterious(0) probably_damaging(0.986) TCGA-OR-A5KB-01 7 126882813 126882813 C A GRM8 Missense_Mutation p.G149V 0.43 deleterious(0) possibly_damaging(0.879) TCGA-OR-A5KB-01 7 127253093 127253093 C A PAX4 Missense_Mutation p.W225L 0.36 tolerated(0.53) possibly_damaging(0.713) TCGA-OR-A5KB-01 7 127253928 127253928 C A PAX4 Missense_Mutation p.L140F 0.25 tolerated(0.14) possibly_damaging(0.682) TCGA-OR-A5KB-01 7 127669562 127669562 G T LRRC4 Missense_Mutation p.P378T 0.39 tolerated(0.09) benign(0.034) TCGA-OR-A5KB-01 7 128315858 128315858 G T FAM71F2 Missense_Mutation p.G104C 0.46 deleterious(0) probably_damaging(0.959) TCGA-OR-A5KB-01 7 128845593 128845593 C T SMO Missense_Mutation p.A297V 0.39 tolerated(0.06) possibly_damaging(0.449) TCGA-OR-A5KB-01 7 128846172 128846172 C G SMO Missense_Mutation p.P368A 0.40 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 7 131865384 131865384 G T PLXNA4 Silent p.L1200L 0.38 TCGA-OR-A5KB-01 7 131912280 131912280 C G PLXNA4 Silent p.L604L 0.36 TCGA-OR-A5KB-01 7 135082955 135082955 G C CNOT4 Missense_Mutation p.S282C 0.36 tolerated(0.06) possibly_damaging(0.847) TCGA-OR-A5KB-01 7 136912824 136912824 T A PTN Splice_Site p.X151_splice 0.40 TCGA-OR-A5KB-01 7 138363243 138363243 G A SVOPL Missense_Mutation p.A37V 0.36 deleterious(0) probably_damaging(0.991) TCGA-OR-A5KB-01 7 139791751 139791751 A C KDM7A Missense_Mutation p.S862A 0.33 tolerated(0.36) benign(0.05) TCGA-OR-A5KB-01 7 139810956 139810956 G A KDM7A Missense_Mutation p.P456L 0.14 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 140244286 140244286 C T DENND2A Intron 0.24 TCGA-OR-A5KB-01 7 140246647 140246647 C A DENND2A Silent p.L710L 0.27 TCGA-OR-A5KB-01 7 140269463 140269463 C A DENND2A Nonsense_Mutation p.E508* 0.17 TCGA-OR-A5KB-01 7 140269464 140269464 C A DENND2A Missense_Mutation p.M507I 0.17 tolerated(0.27) benign(0.017) TCGA-OR-A5KB-01 7 141464522 141464522 G T TAS2R3 Missense_Mutation p.W188C 0.27 deleterious(0.01) possibly_damaging(0.907) TCGA-OR-A5KB-01 7 141672602 141672602 G T TAS2R38 Silent p.I296I 0.24 TCGA-OR-A5KB-01 7 141805635 141805635 G A MGAM Missense_Mutation p.D1840N 0.20 tolerated(0.63) benign(0) TCGA-OR-A5KB-01 7 14188637 14188637 T C DGKB 3'UTR 0.42 TCGA-OR-A5KB-01 7 141955029 141955029 T A PRSS58 Silent p.S94S 0.25 TCGA-OR-A5KB-01 7 142480000 142480000 C A PRSS3P2 RNA 0.11 TCGA-OR-A5KB-01 7 142606676 142606676 C A TRPV5 Silent p.L625L 0.30 TCGA-OR-A5KB-01 7 142638380 142638380 C A KEL Missense_Mutation p.G720C 0.32 deleterious(0) probably_damaging(0.974) TCGA-OR-A5KB-01 7 142640676 142640676 C A KEL Missense_Mutation p.V534L 0.29 deleterious(0.01) possibly_damaging(0.624) TCGA-OR-A5KB-01 7 142659375 142659375 C A KEL 5'UTR 0.32 TCGA-OR-A5KB-01 7 142723927 142723927 G T OR9A2 Nonsense_Mutation p.S98* 0.25 TCGA-OR-A5KB-01 7 142749491 142749491 T C OR6V1 Silent p.F18F 0.13 TCGA-OR-A5KB-01 7 142750347 142750347 C A OR6V1 Missense_Mutation p.Q304K 0.18 tolerated(1) benign(0.003) TCGA-OR-A5KB-01 7 142836633 142836633 C A PIP Silent p.V113V 0.23 TCGA-OR-A5KB-01 7 142960562 142960562 G T GSTK1 5'UTR 0.26 TCGA-OR-A5KB-01 7 143057341 143057341 G T FAM131B Intron 0.23 TCGA-OR-A5KB-01 7 143421822 143421822 G T FAM115C Nonstop_Mutation p.*846Lext*7 0.18 TCGA-OR-A5KB-01 7 143573262 143573262 C A FAM115A Missense_Mutation p.G147V 0.23 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 143573263 143573263 C A FAM115A Missense_Mutation p.G147C 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 143657461 143657461 C A OR2F1 Nonsense_Mutation p.S133* 0.53 TCGA-OR-A5KB-01 7 143657503 143657503 C A OR2F1 Missense_Mutation p.T147K 0.26 tolerated(0.24) benign(0.219) TCGA-OR-A5KB-01 7 143826651 143826651 T A OR2A14 Missense_Mutation p.V149E 0.27 deleterious(0.01) possibly_damaging(0.679) TCGA-OR-A5KB-01 7 144098647 144098647 C T NOBOX Silent p.E112E 0.24 TCGA-OR-A5KB-01 7 145813997 145813997 G C CNTNAP2 Missense_Mutation p.G10A 0.35 tolerated_low_confidence(0.46) benign(0.003) TCGA-OR-A5KB-01 7 14661070 14661070 T A DGKB Missense_Mutation p.N407I 0.27 tolerated(0.16) benign(0.042) TCGA-OR-A5KB-01 7 149466284 149466284 C A ZNF467 Nonsense_Mutation p.E53* 0.36 TCGA-OR-A5KB-01 7 149486861 149486861 C A SSPO RNA 0.32 TCGA-OR-A5KB-01 7 149518741 149518741 C A SSPO RNA 0.33 TCGA-OR-A5KB-01 7 150163771 150163771 C A GIMAP8 5'UTR 0.44 TCGA-OR-A5KB-01 7 150771826 150771826 C T SLC4A2 Missense_Mutation p.P982L 0.35 deleterious(0.02) benign(0.446) TCGA-OR-A5KB-01 7 150972338 150972338 C A SMARCD3 Splice_Site 0.33 TCGA-OR-A5KB-01 7 151478357 151478357 C G PRKAG2 Missense_Mutation p.R116P 0.34 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-OR-A5KB-01 7 151947965 151947965 C A KMT2C Nonsense_Mutation p.E570* 0.45 TCGA-OR-A5KB-01 7 153584820 153584820 G T DPP6 Splice_Site p.X17_splice 0.15 TCGA-OR-A5KB-01 7 153749961 153749961 C A DPP6 Missense_Mutation p.P19H 0.42 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-OR-A5KB-01 7 154561206 154561206 C T DPP6 Silent p.S321S 0.38 TCGA-OR-A5KB-01 7 154598776 154598776 C A DPP6 Missense_Mutation p.S540R 0.30 tolerated(0.18) possibly_damaging(0.888) TCGA-OR-A5KB-01 7 156743069 156743069 G T NOM1 Missense_Mutation p.R213L 0.43 tolerated(0.09) possibly_damaging(0.726) TCGA-OR-A5KB-01 7 19156325 19156325 G T TWIST1 3'UTR 0.41 TCGA-OR-A5KB-01 7 1976421 1976421 C A MAD1L1 Missense_Mutation p.R570L 0.33 deleterious(0.04) benign(0.249) TCGA-OR-A5KB-01 7 19765212 19765212 T A TMEM196 Silent p.L128L 0.31 TCGA-OR-A5KB-01 7 20444293 20444293 G C ITGB8 Missense_Mutation p.G577A 0.24 deleterious(0.01) probably_damaging(0.98) TCGA-OR-A5KB-01 7 20824578 20824578 G A SP8 Silent p.S286S 0.25 TCGA-OR-A5KB-01 7 21789958 21789958 G T DNAH11 Missense_Mutation p.M2979I 0.16 benign(0.001) TCGA-OR-A5KB-01 7 24663284 24663284 G T MPP6 Splice_Site 0.31 TCGA-OR-A5KB-01 7 24789190 24789190 C A DFNA5 Silent p.P68P 0.21 TCGA-OR-A5KB-01 7 27148164 27148164 C A HOXA3 Missense_Mutation p.Q234H 0.18 deleterious(0) probably_damaging(0.934) TCGA-OR-A5KB-01 7 27283071 27283071 G A EVX1 Missense_Mutation p.S141N 0.22 tolerated(0.61) benign(0.004) TCGA-OR-A5KB-01 7 28610012 28610012 G T CREB5 Silent p.G107G 0.35 TCGA-OR-A5KB-01 7 2976779 2976779 C A CARD11 Missense_Mutation p.E411D 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-OR-A5KB-01 7 2978414 2978414 C G CARD11 Missense_Mutation p.E306Q 0.17 deleterious(0) probably_damaging(0.985) TCGA-OR-A5KB-01 7 31146308 31146308 C A ADCYAP1R1 3'UTR 0.30 TCGA-OR-A5KB-01 7 31377995 31377995 G - NEUROD6 Frame_Shift_Del p.R297Gfs*35 0.19 TCGA-OR-A5KB-01 7 34006114 34006114 T C BMPER Missense_Mutation p.Y115H 0.18 tolerated(0.26) benign(0.138) TCGA-OR-A5KB-01 7 34125628 34125628 C A BMPER Missense_Mutation p.H557N 0.16 tolerated(0.11) possibly_damaging(0.647) TCGA-OR-A5KB-01 7 36726385 36726385 C A AOAH Missense_Mutation p.V48L 0.35 tolerated(0.12) benign(0.025) TCGA-OR-A5KB-01 7 37298802 37298802 C A ELMO1 Missense_Mutation p.V133L 0.35 tolerated(0.11) benign(0.107) TCGA-OR-A5KB-01 7 39379343 39379343 C A POU6F2 Missense_Mutation p.P205Q 0.28 tolerated_low_confidence(0.14) unknown(0) TCGA-OR-A5KB-01 7 41739811 41739811 C A INHBA Missense_Mutation p.M54I 0.31 deleterious(0.04) benign(0.398) TCGA-OR-A5KB-01 7 43548522 43548522 C A HECW1 Intron 0.24 TCGA-OR-A5KB-01 7 45222995 45222995 C G RAMP3 Missense_Mutation p.T144S 0.28 tolerated(1) benign(0.021) TCGA-OR-A5KB-01 7 45697346 45697346 A G ADCY1 Missense_Mutation p.E390G 0.27 tolerated(0.3) benign(0.425) TCGA-OR-A5KB-01 7 45697347 45697347 G A ADCY1 Silent p.E390E 0.27 TCGA-OR-A5KB-01 7 45753294 45753294 G T ADCY1 Silent p.V1020V 0.30 TCGA-OR-A5KB-01 7 45932578 45932578 G T IGFBP1 Missense_Mutation p.G223V 0.28 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 48134379 48134379 G T UPP1 5'UTR 0.38 TCGA-OR-A5KB-01 7 48314688 48314688 C G ABCA13 Missense_Mutation p.P1809A 0.39 possibly_damaging(0.871) TCGA-OR-A5KB-01 7 50468109 50468109 G C IKZF1 Silent p.A406A 0.26 TCGA-OR-A5KB-01 7 51092894 51092894 C A COBL Missense_Mutation p.S1227I 0.28 deleterious(0) possibly_damaging(0.851) TCGA-OR-A5KB-01 7 51111286 51111286 C A COBL Silent p.S400S 0.43 TCGA-OR-A5KB-01 7 53103439 53103439 C A POM121L12 Silent p.G25G 0.23 TCGA-OR-A5KB-01 7 53104364 53104364 C A POM121L12 3'UTR 0.19 TCGA-OR-A5KB-01 7 5401321 5401321 G A TNRC18 Missense_Mutation p.A1522V 0.26 benign(0.406) TCGA-OR-A5KB-01 7 54617625 54617625 C G VSTM2A Silent p.A132A 0.26 TCGA-OR-A5KB-01 7 54621654 54621654 C A VSTM2A Intron 0.29 TCGA-OR-A5KB-01 7 55479679 55479679 G T LANCL2 Missense_Mutation p.R302L 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-OR-A5KB-01 7 55752910 55752910 A - RNU6-389P 5'Flank 0.25 TCGA-OR-A5KB-01 7 56128072 56128072 G T CCT6A Missense_Mutation p.R392S 0.26 deleterious(0) possibly_damaging(0.856) TCGA-OR-A5KB-01 7 57188839 57188839 G C ZNF479 Missense_Mutation p.Q95E 0.26 tolerated(0.14) benign(0.255) TCGA-OR-A5KB-01 7 62751990 62751990 G C ZNF733P RNA 0.29 TCGA-OR-A5KB-01 7 62752304 62752304 G T ZNF733P RNA 0.36 TCGA-OR-A5KB-01 7 62752307 62752307 C A ZNF733P RNA 0.36 TCGA-OR-A5KB-01 7 63529396 63529396 G A ZNF727 Splice_Site p.X44_splice 0.30 TCGA-OR-A5KB-01 7 63538709 63538709 G T ZNF727 Nonsense_Mutation p.E428* 0.33 TCGA-OR-A5KB-01 7 6554007 6554007 T A GRID2IP Silent p.T474T 0.36 TCGA-OR-A5KB-01 7 65554141 65554141 G A ASL Silent p.K299K 0.42 TCGA-OR-A5KB-01 7 6561558 6561558 G T GRID2IP Nonsense_Mutation p.S317* 0.29 TCGA-OR-A5KB-01 7 65617218 65617218 G T CRCP Silent p.R107R 0.29 TCGA-OR-A5KB-01 7 71252674 71252674 C A CALN1 3'UTR 0.32 TCGA-OR-A5KB-01 7 71571250 71571250 G T CALN1 Silent p.R92R 0.43 TCGA-OR-A5KB-01 7 72742236 72742236 C A FKBP6 5'Flank 0.40 TCGA-OR-A5KB-01 7 74236973 74236973 C A GTF2IRD2 Nonsense_Mutation p.G185* 0.20 TCGA-OR-A5KB-01 7 75398986 75398986 G A CCL26 3'UTR 0.43 TCGA-OR-A5KB-01 7 75689773 75689773 C T MDH2 Missense_Mutation p.T171I 0.35 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 7 78131056 78131056 G T MAGI2 Missense_Mutation p.P268H 0.28 deleterious(0.01) possibly_damaging(0.45) TCGA-OR-A5KB-01 7 78131057 78131057 G T MAGI2 Missense_Mutation p.P268T 0.28 tolerated(0.14) benign(0.055) TCGA-OR-A5KB-01 7 81359060 81359060 C A HGF Nonsense_Mutation p.E301* 0.21 TCGA-OR-A5KB-01 7 81359061 81359061 C A HGF Missense_Mutation p.L300F 0.22 tolerated(0.08) benign(0.009) TCGA-OR-A5KB-01 7 8258073 8258073 C A ICA1 Silent p.R147R 0.33 TCGA-OR-A5KB-01 7 8258074 8258074 C A ICA1 Missense_Mutation p.R147L 0.33 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 7 84628911 84628911 G T SEMA3D Missense_Mutation p.L727I 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-OR-A5KB-01 7 84644451 84644451 C A SEMA3D Missense_Mutation p.D543Y 0.39 deleterious(0) probably_damaging(0.935) TCGA-OR-A5KB-01 7 84644491 84644491 G T SEMA3D Silent p.L529L 0.36 TCGA-OR-A5KB-01 7 86394645 86394645 G A GRM3 Missense_Mutation p.E62K 0.20 tolerated(1) benign(0.136) TCGA-OR-A5KB-01 7 87082308 87082308 C A ABCB4 Missense_Mutation p.G163V 0.28 deleterious(0) probably_damaging(0.939) TCGA-OR-A5KB-01 7 87138732 87138732 C A ABCB1 Silent p.V1116V 0.15 TCGA-OR-A5KB-01 7 87526653 87526653 C A DBF4 Missense_Mutation p.Q227K 0.27 tolerated(0.4) benign(0.137) TCGA-OR-A5KB-01 7 88963902 88963902 C T ZNF804B Missense_Mutation p.P536S 0.26 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 88966065 88966065 C A ZNF804B Missense_Mutation p.P1257T 0.37 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 92732074 92732074 C T SAMD9 Missense_Mutation p.E1113K 0.24 tolerated(0.36) benign(0.057) TCGA-OR-A5KB-01 7 92763958 92763958 C A SAMD9L Missense_Mutation p.V443L 0.27 deleterious(0) probably_damaging(0.936) TCGA-OR-A5KB-01 7 93073002 93073002 C A CALCR Missense_Mutation p.C273F 0.39 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 7 94295025 94295025 C A PEG10 3'UTR 0.22 TCGA-OR-A5KB-01 7 96324204 96324204 C A SHFM1 Splice_Site p.X26_splice 0.45 TCGA-OR-A5KB-01 7 97944819 97944819 C A BAIAP2L1 Missense_Mutation p.D198Y 0.30 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 7 99129205 99129205 C - ZKSCAN5 Frame_Shift_Del p.H619Tfs*58 0.23 TCGA-OR-A5KB-01 7 99169990 99169990 A G ZNF655 Missense_Mutation p.R122G 0.05 tolerated(0.28) benign(0.291) TCGA-OR-A5KB-01 7 99811669 99811669 C A STAG3 3'UTR 0.31 TCGA-OR-A5KB-01 8 100549080 100549080 G A VPS13B Intron 0.16 TCGA-OR-A5KB-01 8 101154328 101154328 C - FBXO43 Frame_Shift_Del p.D52Tfs*30 0.21 TCGA-OR-A5KB-01 8 101725319 101725319 T G PABPC1 Missense_Mutation p.Q245P 0.47 deleterious(0) possibly_damaging(0.587) TCGA-OR-A5KB-01 8 10389053 10389053 C G PRSS55 Missense_Mutation p.A199G 0.47 tolerated(0.12) possibly_damaging(0.472) TCGA-OR-A5KB-01 8 10467199 10467199 C - RP1L1 Frame_Shift_Del p.G1470Afs*16 0.29 TCGA-OR-A5KB-01 8 104948841 104948841 C T RIMS2 Missense_Mutation p.T813I 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5KB-01 8 105263996 105263996 C A RIMS2 Missense_Mutation p.A1333D 0.33 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-OR-A5KB-01 8 105361150 105361150 G T DCSTAMP Missense_Mutation p.G124C 0.45 deleterious(0) possibly_damaging(0.77) TCGA-OR-A5KB-01 8 105511738 105511738 A C LRP12 Missense_Mutation p.D94E 0.38 tolerated(0.07) benign(0.022) TCGA-OR-A5KB-01 8 106814687 106814687 G T ZFPM2 Nonsense_Mutation p.G793* 0.27 TCGA-OR-A5KB-01 8 110464351 110464351 A T PKHD1L1 Splice_Site p.X2117_splice 0.50 TCGA-OR-A5KB-01 8 110502235 110502235 G T PKHD1L1 Missense_Mutation p.R3312M 0.28 tolerated(0.09) possibly_damaging(0.854) TCGA-OR-A5KB-01 8 11177486 11177486 G T MTMR9 Intron 0.44 TCGA-OR-A5KB-01 8 113237100 113237100 G C CSMD3 Missense_Mutation p.A3675G 0.30 tolerated(0.08) possibly_damaging(0.828) TCGA-OR-A5KB-01 8 113516042 113516042 G T CSMD3 Missense_Mutation p.T1687N 0.45 tolerated(0.21) probably_damaging(0.977) TCGA-OR-A5KB-01 8 114111074 114111074 C A CSMD3 Silent p.G276G 0.32 TCGA-OR-A5KB-01 8 114326847 114326847 G T CSMD3 Nonsense_Mutation p.Y118* 0.40 TCGA-OR-A5KB-01 8 114449071 114449071 G T CSMD3 Missense_Mutation p.R5S 0.32 tolerated_low_confidence(0.57) benign(0) TCGA-OR-A5KB-01 8 11607705 11607705 C A GATA4 Missense_Mutation p.P290H 0.13 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 8 118183272 118183272 G C SLC30A8 Splice_Site p.X277_splice 0.40 TCGA-OR-A5KB-01 8 11970441 11970441 G T ZNF705D Missense_Mutation p.R226I 0.54 deleterious(0) possibly_damaging(0.879) TCGA-OR-A5KB-01 8 11996101 11996101 G T USP17L2 Missense_Mutation p.P57T 0.17 tolerated(0.1) benign(0.253) TCGA-OR-A5KB-01 8 120252405 120252405 G A MAL2 Missense_Mutation p.D102N 0.39 deleterious(0.01) possibly_damaging(0.871) TCGA-OR-A5KB-01 8 120252497 120252497 T C MAL2 Silent p.N132N 0.22 TCGA-OR-A5KB-01 8 121215990 121215990 C A COL14A1 Missense_Mutation p.S307Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 8 125339634 125339634 T A TMEM65 Silent p.I126I 0.27 TCGA-OR-A5KB-01 8 128427957 128427957 A T POU5F1B 5'UTR 0.30 TCGA-OR-A5KB-01 8 128428182 128428183 GG T POU5F1B Frame_Shift_Del p.G24Vfs*10 0.30 TCGA-OR-A5KB-01 8 12878570 12878570 G A KIAA1456 Missense_Mutation p.A128T 0.15 deleterious(0.01) benign(0.407) TCGA-OR-A5KB-01 8 12885013 12885013 G C KIAA1456 3'UTR 0.24 TCGA-OR-A5KB-01 8 131964240 131964240 C A ADCY8 Missense_Mutation p.R372L 0.28 deleterious(0) benign(0.274) TCGA-OR-A5KB-01 8 133090001 133090001 G T HHLA1 Silent p.G417G 0.44 TCGA-OR-A5KB-01 8 133187720 133187720 C A KCNQ3 Missense_Mutation p.D305Y 0.48 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 8 134050829 134050829 C A SLA Missense_Mutation p.M297I 0.30 tolerated_low_confidence(0.98) benign(0.002) TCGA-OR-A5KB-01 8 134072520 134072520 G C SLA Silent p.L2L 0.30 TCGA-OR-A5KB-01 8 134145773 134145773 C A TG Missense_Mutation p.P2686H 0.43 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 8 139158277 139158277 G T FAM135B Silent p.L1155L 0.37 TCGA-OR-A5KB-01 8 139165292 139165292 C A FAM135B Missense_Mutation p.V476F 0.18 tolerated(0.52) benign(0.169) TCGA-OR-A5KB-01 8 139190892 139190892 C A FAM135B Missense_Mutation p.K305N 0.24 tolerated(0.05) possibly_damaging(0.84) TCGA-OR-A5KB-01 8 139712358 139712358 C A COL22A1 Missense_Mutation p.M863I 0.31 benign(0.37) TCGA-OR-A5KB-01 8 143694448 143694448 G T ARC Silent p.P395P 0.31 TCGA-OR-A5KB-01 8 143694832 143694832 G C ARC Missense_Mutation p.F267L 0.52 deleterious(0.01) probably_damaging(0.979) TCGA-OR-A5KB-01 8 144681841 144681841 G T TIGD5 Nonsense_Mutation p.E590* 0.41 TCGA-OR-A5KB-01 8 144811162 144811162 C G FAM83H Missense_Mutation p.A238P 0.42 tolerated(0.13) probably_damaging(0.972) TCGA-OR-A5KB-01 8 144941957 144941957 C A EPPK1 Missense_Mutation p.G1822V 0.35 benign(0.001) TCGA-OR-A5KB-01 8 144991067 144991067 C G PLEC Missense_Mutation p.G4445R 0.48 probably_damaging(1) TCGA-OR-A5KB-01 8 144991254 144991254 G A PLEC Silent p.S4382S 0.35 TCGA-OR-A5KB-01 8 145140943 145140943 C A GPAA1 Missense_Mutation p.T594N 0.12 deleterious(0) benign(0.073) TCGA-OR-A5KB-01 8 145245734 145245734 G T MROH1 Missense_Mutation p.D204Y 0.31 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KB-01 8 145678757 145678757 G A CYHR1 Silent p.P111P 0.43 TCGA-OR-A5KB-01 8 1497807 1497807 C A DLGAP2 Missense_Mutation p.H316Q 0.61 tolerated(0.38) benign(0.13) TCGA-OR-A5KB-01 8 15967576 15967576 G A MSR1 3'UTR 0.30 TCGA-OR-A5KB-01 8 1626470 1626470 G T DLGAP2 Missense_Mutation p.E713D 0.17 tolerated(0.1) probably_damaging(0.992) TCGA-OR-A5KB-01 8 17796410 17796410 A T PCM1 Silent p.S168S 0.30 TCGA-OR-A5KB-01 8 18257900 18257900 C A NAT2 Silent p.S129S 0.22 TCGA-OR-A5KB-01 8 18258377 18258377 T A NAT2 Silent p.L288L 0.23 TCGA-OR-A5KB-01 8 1951272 1951272 G T KBTBD11 3'UTR 0.33 TCGA-OR-A5KB-01 8 1951273 1951273 G T KBTBD11 3'UTR 0.33 TCGA-OR-A5KB-01 8 2054093 2054093 C A MYOM2 Nonsense_Mutation p.C932* 0.23 TCGA-OR-A5KB-01 8 2090321 2090321 G T MYOM2 Missense_Mutation p.K1341N 0.26 deleterious(0) probably_damaging(0.947) TCGA-OR-A5KB-01 8 21769421 21769421 C T DOK2 Missense_Mutation p.A142T 0.22 tolerated(0.56) benign(0.001) TCGA-OR-A5KB-01 8 21842176 21842176 C G XPO7 Missense_Mutation p.L433V 0.34 deleterious(0.02) probably_damaging(0.974) TCGA-OR-A5KB-01 8 22147806 22147806 G T PIWIL2 Silent p.L376L 0.32 TCGA-OR-A5KB-01 8 23179795 23179795 C T LOXL2 Splice_Site p.X384_splice 0.29 TCGA-OR-A5KB-01 8 23538992 23538992 C A NKX3-1 Silent p.L149L 0.32 TCGA-OR-A5KB-01 8 23560030 23560030 G T NKX2-6 Missense_Mutation p.H280Q 0.27 tolerated(0.34) benign(0.003) TCGA-OR-A5KB-01 8 25101270 25101270 G T DOCK5 Nonsense_Mutation p.E42* 0.31 TCGA-OR-A5KB-01 8 27516983 27516983 C T SCARA3 Silent p.S432S 0.19 TCGA-OR-A5KB-01 8 27646479 27646479 A T ESCO2 Missense_Mutation p.E416V 0.31 deleterious(0) probably_damaging(0.979) TCGA-OR-A5KB-01 8 27779158 27779158 C A SCARA5 Silent p.A282A 0.28 TCGA-OR-A5KB-01 8 27898604 27898604 C A NUGGC Missense_Mutation p.R525S 0.31 deleterious(0) benign(0.424) TCGA-OR-A5KB-01 8 2800005 2800005 G T CSMD1 Silent p.L3508L 0.23 TCGA-OR-A5KB-01 8 2855623 2855623 T A CSMD1 Missense_Mutation p.T2763S 0.27 possibly_damaging(0.551) TCGA-OR-A5KB-01 8 2910065 2910065 G T CSMD1 Missense_Mutation p.L2527I 0.20 probably_damaging(0.917) TCGA-OR-A5KB-01 8 30889911 30889911 C A PURG Missense_Mutation p.G130C 0.40 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 8 3216806 3216806 C G CSMD1 Missense_Mutation p.G1058R 0.13 probably_damaging(1) TCGA-OR-A5KB-01 8 33449475 33449475 C T DUSP26 3'UTR 0.37 TCGA-OR-A5KB-01 8 38123741 38123741 C A PPAPDC1B Missense_Mutation p.R184S 0.18 deleterious(0) possibly_damaging(0.714) TCGA-OR-A5KB-01 8 38880770 38880770 G T ADAM9 Silent p.V280V 0.45 TCGA-OR-A5KB-01 8 41790513 41790513 C T KAT6A Missense_Mutation p.G1742D 0.38 unknown(0) TCGA-OR-A5KB-01 8 52233364 52233364 A C PXDNL Missense_Mutation p.C1414G 0.52 deleterious(0.04) benign(0.443) TCGA-OR-A5KB-01 8 52284587 52284587 C A PXDNL Missense_Mutation p.K1249N 0.50 deleterious(0) probably_damaging(0.949) TCGA-OR-A5KB-01 8 55537620 55537620 C A RP1 Missense_Mutation p.P393H 0.28 tolerated(0.53) possibly_damaging(0.525) TCGA-OR-A5KB-01 8 56435991 56435991 G T XKR4 Missense_Mutation p.R386S 0.43 deleterious(0) probably_damaging(0.991) TCGA-OR-A5KB-01 8 56436903 56436903 C G XKR4 3'UTR 0.32 TCGA-OR-A5KB-01 8 59720204 59720204 G T TOX 3'UTR 0.40 TCGA-OR-A5KB-01 8 59750748 59750748 A T TOX Missense_Mutation p.F272L 0.45 deleterious(0) probably_damaging(0.977) TCGA-OR-A5KB-01 8 61654436 61654436 G T CHD7 Missense_Mutation p.A149S 0.50 benign(0.364) TCGA-OR-A5KB-01 8 61765660 61765660 G C CHD7 Missense_Mutation p.D2126H 0.44 possibly_damaging(0.541) TCGA-OR-A5KB-01 8 64099049 64099049 T G YTHDF3 Missense_Mutation p.S159R 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5KB-01 8 6599206 6599206 G A AGPAT5 Missense_Mutation p.G174S 0.38 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 8 6669732 6669732 C A XKR5 RNA 0.33 TCGA-OR-A5KB-01 8 67576973 67576973 C A VCPIP1 Missense_Mutation p.G741W 0.20 deleterious(0) possibly_damaging(0.514) TCGA-OR-A5KB-01 8 67926709 67926709 C G PPP1R42 Missense_Mutation p.C83S 0.32 tolerated(0.84) benign(0.006) TCGA-OR-A5KB-01 8 69069640 69069640 G T PREX2 Nonsense_Mutation p.E1439* 0.31 TCGA-OR-A5KB-01 8 70981760 70981760 C A PRDM14 Silent p.P112P 0.27 TCGA-OR-A5KB-01 8 71036168 71036168 G A NCOA2 Missense_Mutation p.S1415L 0.13 deleterious(0.01) possibly_damaging(0.821) TCGA-OR-A5KB-01 8 73480116 73480116 G T KCNB2 Silent p.L49L 0.29 TCGA-OR-A5KB-01 8 73849028 73849028 G T KCNB2 Missense_Mutation p.D480Y 0.29 deleterious(0) possibly_damaging(0.823) TCGA-OR-A5KB-01 8 77617610 77617610 G T ZFHX4 Silent p.S429S 0.21 TCGA-OR-A5KB-01 8 77618388 77618388 G T ZFHX4 Missense_Mutation p.G689C 0.61 probably_damaging(0.984) TCGA-OR-A5KB-01 8 77620165 77620165 C - ZFHX4 Frame_Shift_Del p.I993Lfs*7 0.19 TCGA-OR-A5KB-01 8 77763363 77763363 T C ZFHX4 Silent p.C1402C 0.30 TCGA-OR-A5KB-01 8 77763737 77763737 C A ZFHX4 Missense_Mutation p.P1527H 0.31 probably_damaging(0.95) TCGA-OR-A5KB-01 8 77764446 77764446 G T ZFHX4 Silent p.G1763G 0.53 TCGA-OR-A5KB-01 8 77766416 77766416 C A ZFHX4 Missense_Mutation p.P2420H 0.49 benign(0.173) TCGA-OR-A5KB-01 8 77776722 77776722 C G ZFHX4 Missense_Mutation p.S3591C 0.14 probably_damaging(0.977) TCGA-OR-A5KB-01 8 81412557 81412557 G T ZBTB10 Missense_Mutation p.V601L 0.49 tolerated(0.09) benign(0.024) TCGA-OR-A5KB-01 8 82359617 82359617 C T PMP2 Missense_Mutation p.S2N 0.30 deleterious(0.01) benign(0) TCGA-OR-A5KB-01 8 86162997 86162997 T A CA13 Silent p.P22P 0.44 TCGA-OR-A5KB-01 8 87162446 87162446 C A ATP6V0D2 Missense_Mutation p.P249T 0.34 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 8 88885067 88885067 G T DCAF4L2 Missense_Mutation p.A378E 0.33 tolerated(0.3) benign(0.254) TCGA-OR-A5KB-01 8 89053604 89053604 C A MMP16 3'UTR 0.33 TCGA-OR-A5KB-01 8 89081679 89081679 G T MMP16 Intron 0.23 TCGA-OR-A5KB-01 8 91637852 91637852 C A TMEM64 3'UTR 0.36 TCGA-OR-A5KB-01 8 92008967 92008967 G C TMEM55A Nonsense_Mutation p.S182* 0.45 TCGA-OR-A5KB-01 8 92145519 92145519 G T LRRC69 Nonsense_Mutation p.G189* 0.43 TCGA-OR-A5KB-01 8 92972688 92972688 G T RUNX1T1 Silent p.R544R 0.29 TCGA-OR-A5KB-01 8 95403988 95403988 G T RAD54B Missense_Mutation p.A553E 0.22 tolerated(0.37) benign(0.021) TCGA-OR-A5KB-01 8 9620743 9620743 G T TNKS Missense_Mutation p.V1121L 0.51 deleterious(0.03) probably_damaging(0.957) TCGA-OR-A5KB-01 9 100122323 100122323 G T CCDC180 Missense_Mutation p.Q1185H 0.33 deleterious(0.03) benign(0.387) TCGA-OR-A5KB-01 9 100693484 100693484 G T HEMGN Missense_Mutation p.Q65K 0.21 tolerated(0.86) benign(0) TCGA-OR-A5KB-01 9 101749611 101749611 C A COL15A1 Silent p.P228P 0.39 TCGA-OR-A5KB-01 9 101765834 101765834 A G COL15A1 Missense_Mutation p.M389V 0.35 tolerated_low_confidence(1) benign(0) TCGA-OR-A5KB-01 9 104390541 104390541 A T GRIN3A Missense_Mutation p.L832Q 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 9 104432880 104432880 T A GRIN3A Missense_Mutation p.Y605F 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-OR-A5KB-01 9 104499917 104499917 C A GRIN3A Missense_Mutation p.E115D 0.33 tolerated_low_confidence(0.42) benign(0.05) TCGA-OR-A5KB-01 9 107331611 107331611 C A OR13C8 Missense_Mutation p.L55M 0.30 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 9 109746465 109746465 A T ZNF462 Splice_Site p.X2278_splice 0.33 TCGA-OR-A5KB-01 9 113169869 113169869 G T SVEP1 Missense_Mutation p.H2671N 0.30 benign(0.102) TCGA-OR-A5KB-01 9 113265477 113265477 G T SVEP1 Missense_Mutation p.R442S 0.33 benign(0.319) TCGA-OR-A5KB-01 9 113547978 113547978 T A MUSK Missense_Mutation p.F586L 0.47 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 9 115969505 115969505 G A FKBP15 Missense_Mutation p.H81Y 0.44 deleterious(0.03) benign(0.017) TCGA-OR-A5KB-01 9 116151361 116151361 T A ALAD Missense_Mutation p.Y276F 0.40 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 9 116176080 116176080 G A C9orf43 Missense_Mutation p.G65S 0.33 tolerated(0.13) benign(0) TCGA-OR-A5KB-01 9 117070019 117070019 T C COL27A1 Silent p.H1726H 0.33 TCGA-OR-A5KB-01 9 117143414 117143414 G A AKNA Missense_Mutation p.P67L 0.46 tolerated(0.53) benign(0.002) TCGA-OR-A5KB-01 9 118949703 118949703 G C PAPPA Missense_Mutation p.S229T 0.12 deleterious(0) possibly_damaging(0.786) TCGA-OR-A5KB-01 9 118997834 118997834 C G PAPPA Missense_Mutation p.L884V 0.31 tolerated(0.65) benign(0.364) TCGA-OR-A5KB-01 9 119097159 119097159 C A PAPPA Nonsense_Mutation p.C1139* 0.21 TCGA-OR-A5KB-01 9 119903694 119903694 C G ASTN2 Intron 0.33 TCGA-OR-A5KB-01 9 120053671 120053671 G C ASTN2 Silent p.A188A 0.37 TCGA-OR-A5KB-01 9 120475502 120475502 G C TLR4 Missense_Mutation p.A366P 0.28 tolerated(0.18) benign(0.001) TCGA-OR-A5KB-01 9 123888004 123888004 A G CNTRL Silent p.A605A 0.29 TCGA-OR-A5KB-01 9 124936842 124936842 C A MORN5 Missense_Mutation p.D125E 0.42 tolerated(0.08) possibly_damaging(0.727) TCGA-OR-A5KB-01 9 124971944 124971944 G T LHX6 Silent p.P369P 0.44 TCGA-OR-A5KB-01 9 125154577 125154577 G T PTGS1 Silent p.G518G 0.37 TCGA-OR-A5KB-01 9 125562551 125562551 C A OR1K1 Silent p.I50I 0.39 TCGA-OR-A5KB-01 9 125681181 125681181 G A ZBTB26 Missense_Mutation p.L345F 0.31 tolerated(0.05) possibly_damaging(0.566) TCGA-OR-A5KB-01 9 127549290 127549290 G T OLFML2A Nonsense_Mutation p.E43* 0.39 TCGA-OR-A5KB-01 9 127670717 127670717 C T GOLGA1 Missense_Mutation p.R335K 0.35 deleterious(0.03) possibly_damaging(0.805) TCGA-OR-A5KB-01 9 129646444 129646444 A T ZBTB34 3'UTR 0.37 TCGA-OR-A5KB-01 9 130501188 130501188 C A SH2D3C Missense_Mutation p.R807L 0.39 tolerated(0.08) benign(0.001) TCGA-OR-A5KB-01 9 131395498 131395498 G A SPTAN1 Missense_Mutation p.R2440Q 0.20 tolerated(0.07) benign(0.026) TCGA-OR-A5KB-01 9 131513410 131513410 C A ZER1 Silent p.R392R 0.34 TCGA-OR-A5KB-01 9 133305979 133305979 G T HMCN2 Nonsense_Mutation p.G589* 0.35 TCGA-OR-A5KB-01 9 133342123 133342123 C T ASS1 Silent p.P144P 0.34 TCGA-OR-A5KB-01 9 135140278 135140278 T A SETX Missense_Mutation p.K2461M 0.46 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 9 135210060 135210060 A C SETX Missense_Mutation p.L258W 0.16 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 9 135505693 135505693 G A DDX31 Missense_Mutation p.S635L 0.17 deleterious(0) probably_damaging(0.914) TCGA-OR-A5KB-01 9 135554353 135554353 G T GTF3C4 Missense_Mutation p.Q449H 0.35 tolerated(0.07) possibly_damaging(0.656) TCGA-OR-A5KB-01 9 135781060 135781060 T A TSC1 Silent p.T635T 0.34 TCGA-OR-A5KB-01 9 136029495 136029495 C A GBGT1 Missense_Mutation p.Q171H 0.32 tolerated(0.14) benign(0.101) TCGA-OR-A5KB-01 9 136080735 136080735 C T OBP2B 3'UTR 0.33 TCGA-OR-A5KB-01 9 136324173 136324173 G - ADAMTS13 Frame_Shift_Del p.A1386Lfs*10 0.28 TCGA-OR-A5KB-01 9 137658845 137658845 G T COL5A1 Splice_Site p.X712_splice 0.33 TCGA-OR-A5KB-01 9 138585537 138585537 C T SOHLH1 Missense_Mutation p.S357N 0.33 deleterious(0) possibly_damaging(0.682) TCGA-OR-A5KB-01 9 138660771 138660771 G T KCNT1 Missense_Mutation p.V500F 0.23 deleterious(0) possibly_damaging(0.851) TCGA-OR-A5KB-01 9 139341310 139341310 G A SEC16A Silent p.P2263P 0.42 TCGA-OR-A5KB-01 9 139391450 139391450 C G NOTCH1 Silent p.L2247L 0.26 TCGA-OR-A5KB-01 9 139639178 139639178 G C LCN6 Missense_Mutation p.A143G 0.38 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 9 140126591 140126591 G T SLC34A3 Missense_Mutation p.K51N 0.38 tolerated(0.07) probably_damaging(0.987) TCGA-OR-A5KB-01 9 140671292 140671292 G T EHMT1 Missense_Mutation p.G672C 0.36 deleterious(0.01) probably_damaging(0.928) TCGA-OR-A5KB-01 9 19063554 19063554 T C HAUS6 Silent p.S467S 0.55 TCGA-OR-A5KB-01 9 27949236 27949236 G T LINGO2 Missense_Mutation p.S478R 0.54 deleterious(0.01) benign(0.246) TCGA-OR-A5KB-01 9 34835166 34835166 G T FAM205B RNA 0.22 TCGA-OR-A5KB-01 9 36170829 36170829 G T CCIN Missense_Mutation p.V444L 0.56 tolerated(0.05) benign(0.327) TCGA-OR-A5KB-01 9 43626768 43626768 T A SPATA31A6 Missense_Mutation p.Q640L 0.62 deleterious(0.04) possibly_damaging(0.857) TCGA-OR-A5KB-01 9 43627064 43627064 C A SPATA31A6 Missense_Mutation p.W541C 0.60 tolerated(0.14) benign(0.202) TCGA-OR-A5KB-01 9 43737421 43737421 A T CNTNAP3B Missense_Mutation p.Q97H 0.49 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 9 43815873 43815873 T C CNTNAP3B Silent p.S209S 0.24 TCGA-OR-A5KB-01 9 712593 712593 T A KANK1 Silent p.S609S 0.58 TCGA-OR-A5KB-01 9 73027994 73027994 C G KLF9 Missense_Mutation p.D96H 0.17 tolerated(0.16) possibly_damaging(0.712) TCGA-OR-A5KB-01 9 74349872 74349872 C A TMEM2 Nonsense_Mutation p.G415* 0.26 TCGA-OR-A5KB-01 9 74810477 74810477 C A GDA Missense_Mutation p.P62Q 0.30 tolerated(0.39) benign(0.011) TCGA-OR-A5KB-01 9 77249546 77249546 G - RORB Splice_Site p.X32_splice 0.22 TCGA-OR-A5KB-01 9 77423024 77423024 C A TRPM6 Missense_Mutation p.G522C 0.30 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KB-01 9 77431651 77431651 C A TRPM6 Silent p.L414L 0.27 TCGA-OR-A5KB-01 9 79320603 79320603 T A PRUNE2 Missense_Mutation p.N2196I 0.36 tolerated(0.13) benign(0.231) TCGA-OR-A5KB-01 9 82321726 82321726 G T TLE4 Missense_Mutation p.R283L 0.33 tolerated(0.36) benign(0.015) TCGA-OR-A5KB-01 9 84530357 84530357 C A SPATA31D5P RNA 0.40 TCGA-OR-A5KB-01 9 84530929 84530929 G T SPATA31D5P RNA 0.21 TCGA-OR-A5KB-01 9 84533335 84533335 C A SPATA31D5P RNA 0.18 TCGA-OR-A5KB-01 9 84534013 84534013 A G SPATA31D5P RNA 0.30 TCGA-OR-A5KB-01 9 84547336 84547336 C T RP11-383M4.6 Intron 0.25 TCGA-OR-A5KB-01 9 84564809 84564809 C A RP11-383M4.6 Intron 0.25 TCGA-OR-A5KB-01 9 84607383 84607383 C A SPATA31D1 Silent p.V666V 0.34 TCGA-OR-A5KB-01 9 84607770 84607770 G T SPATA31D1 Missense_Mutation p.K795N 0.32 tolerated(0.12) benign(0.012) TCGA-OR-A5KB-01 9 84608003 84608003 A T SPATA31D1 Missense_Mutation p.H873L 0.27 tolerated(0.14) possibly_damaging(0.503) TCGA-OR-A5KB-01 9 84608098 84608098 G T SPATA31D1 Missense_Mutation p.A905S 0.40 tolerated(0.15) benign(0.343) TCGA-OR-A5KB-01 9 8518129 8518129 G T PTPRD Missense_Mutation p.P421Q 0.47 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 9 8636699 8636699 C A PTPRD Missense_Mutation p.E70D 0.62 deleterious(0.01) possibly_damaging(0.88) TCGA-OR-A5KB-01 9 87636357 87636357 C A NTRK2 3'UTR 0.38 TCGA-OR-A5KB-01 9 88162051 88162051 A T AGTPBP1 Silent p.S1178S 0.35 TCGA-OR-A5KB-01 9 90318057 90318057 G T DAPK1 Silent p.V995V 0.37 TCGA-OR-A5KB-01 9 93637019 93637019 G C SYK Missense_Mutation p.E357Q 0.48 deleterious(0) probably_damaging(0.984) TCGA-OR-A5KB-01 9 95076909 95076909 C G NOL8 Missense_Mutation p.K666N 0.27 tolerated(0.17) benign(0.006) TCGA-OR-A5KB-01 9 95077071 95077071 G A NOL8 Silent p.S612S 0.48 TCGA-OR-A5KB-01 9 95263198 95263198 G T ECM2 Missense_Mutation p.P581Q 0.26 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 9 95263199 95263199 G T ECM2 Missense_Mutation p.P581T 0.27 deleterious(0.01) possibly_damaging(0.841) TCGA-OR-A5KB-01 9 990798 990798 G T DMRT3 Missense_Mutation p.R404S 0.56 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-OR-A5KB-01 9 99694487 99694487 C - NUTM2G Frame_Shift_Del p.I169Sfs*83 0.24 TCGA-OR-A5KB-01 X 100093269 100093269 G T CSTF2 Missense_Mutation p.Q551H 0.17 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 X 100243238 100243238 C A ARL13A Nonsense_Mutation p.S237* 0.27 TCGA-OR-A5KB-01 X 100509496 100509496 C A DRP2 Missense_Mutation p.P687H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KB-01 X 100524101 100524101 G T TAF7L 3'UTR 0.20 TCGA-OR-A5KB-01 X 100615077 100615077 C A BTK Nonsense_Mutation p.E280* 0.18 TCGA-OR-A5KB-01 X 100880257 100880257 C A ARMCX3 Silent p.A96A 0.25 TCGA-OR-A5KB-01 X 100911671 100911671 C A ARMCX2 Missense_Mutation p.V302F 0.14 deleterious_low_confidence(0) benign(0.392) TCGA-OR-A5KB-01 X 101096062 101096062 C A NXF5 Missense_Mutation p.D136Y 0.40 deleterious(0) possibly_damaging(0.649) TCGA-OR-A5KB-01 X 101381800 101381800 G T TCEAL2 5'UTR 0.13 TCGA-OR-A5KB-01 X 101409039 101409039 C T BEX5 Missense_Mutation p.D67N 0.20 tolerated(0.3) probably_damaging(0.999) TCGA-OR-A5KB-01 X 101615385 101615385 C G NXF2B 3'UTR 0.29 TCGA-OR-A5KB-01 X 101821837 101821837 C A NXF4 Intron 0.42 TCGA-OR-A5KB-01 X 101821898 101821898 C G NXF4 RNA 0.11 TCGA-OR-A5KB-01 X 101822895 101822895 G T NXF4 RNA 0.53 TCGA-OR-A5KB-01 X 101909810 101909810 T A GPRASP1 Silent p.A323A 0.54 TCGA-OR-A5KB-01 X 101970728 101970728 G T GPRASP2 Nonsense_Mutation p.E311* 0.27 TCGA-OR-A5KB-01 X 102317893 102317893 T C BEX1 Missense_Mutation p.S104G 0.22 tolerated(0.09) benign(0.11) TCGA-OR-A5KB-01 X 102334159 102334159 C A NXF3 Silent p.V456V 0.45 TCGA-OR-A5KB-01 X 102471392 102471392 G T BEX4 Missense_Mutation p.R104L 0.35 tolerated(0.07) benign(0.33) TCGA-OR-A5KB-01 X 102471880 102471880 G A BEX4 3'UTR 0.21 TCGA-OR-A5KB-01 X 102755188 102755188 G T RAB40A Missense_Mutation p.S166Y 0.30 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 X 102840961 102840961 C A TCEAL4 5'UTR 0.21 TCGA-OR-A5KB-01 X 102884854 102884854 C A TCEAL1 Missense_Mutation p.P4T 0.24 tolerated_low_confidence(0.54) benign(0) TCGA-OR-A5KB-01 X 103349892 103349892 G T SLC25A53 Silent p.R17R 0.33 TCGA-OR-A5KB-01 X 104464179 104464179 C A TEX13A Missense_Mutation p.A233S 0.29 tolerated(0.55) benign(0.014) TCGA-OR-A5KB-01 X 104465051 104465051 C A TEX13A Missense_Mutation p.G11W 0.36 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 105011209 105011209 C A IL1RAPL2 Missense_Mutation p.S539Y 0.37 deleterious(0) benign(0.075) TCGA-OR-A5KB-01 X 105132287 105132287 G T NRK Missense_Mutation p.D85Y 0.36 deleterious(0) probably_damaging(0.987) TCGA-OR-A5KB-01 X 105153825 105153825 G T NRK Missense_Mutation p.W732L 0.26 tolerated(0.06) possibly_damaging(0.487) TCGA-OR-A5KB-01 X 105178368 105178368 C G NRK Missense_Mutation p.S1145C 0.29 deleterious(0.03) possibly_damaging(0.77) TCGA-OR-A5KB-01 X 105187993 105187993 C A NRK Missense_Mutation p.A1341E 0.32 deleterious(0) possibly_damaging(0.776) TCGA-OR-A5KB-01 X 105197070 105197070 A G NRK Missense_Mutation p.I1521V 0.44 tolerated(0.06) benign(0.187) TCGA-OR-A5KB-01 X 105199615 105199615 A G NRK 3'UTR 0.45 TCGA-OR-A5KB-01 X 105279361 105279361 G A SERPINA7 Missense_Mutation p.P213L 0.30 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KB-01 X 105451769 105451769 C A MUM1L1 3'UTR 0.24 TCGA-OR-A5KB-01 X 105451770 105451770 C A MUM1L1 3'UTR 0.24 TCGA-OR-A5KB-01 X 105452164 105452164 C G MUM1L1 3'UTR 0.32 TCGA-OR-A5KB-01 X 106083404 106083404 G T TBC1D8B Nonsense_Mutation p.G494* 0.33 TCGA-OR-A5KB-01 X 106172103 106172103 C A CLDN2 Silent p.P215P 0.31 TCGA-OR-A5KB-01 X 106185911 106185911 G T MORC4 Missense_Mutation p.S737Y 0.39 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-OR-A5KB-01 X 106242923 106242923 G T MORC4 Silent p.A53A 0.45 TCGA-OR-A5KB-01 X 106845186 106845186 G T FRMPD3 Missense_Mutation p.R1339L 0.36 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 X 107420097 107420097 C A COL4A6 Missense_Mutation p.G888V 0.35 probably_damaging(1) TCGA-OR-A5KB-01 X 107681448 107681448 G T COL4A6 Intron 0.35 TCGA-OR-A5KB-01 X 107911571 107911571 A T COL4A5 Missense_Mutation p.L1209F 0.27 unknown(0) TCGA-OR-A5KB-01 X 107976957 107976957 G A IRS4 Missense_Mutation p.P873L 0.30 tolerated(0.07) unknown(0) TCGA-OR-A5KB-01 X 108708517 108708517 G T GUCY2F Silent p.R296R 0.33 TCGA-OR-A5KB-01 X 109507776 109507776 G C AMMECR1 Missense_Mutation p.C175W 0.29 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 109696335 109696335 G C RGAG1 Missense_Mutation p.M830I 0.32 tolerated(0.07) benign(0.149) TCGA-OR-A5KB-01 X 109696663 109696663 C A RGAG1 Missense_Mutation p.Q940K 0.32 tolerated(0.19) benign(0.098) TCGA-OR-A5KB-01 X 110490730 110490730 C A CAPN6 Missense_Mutation p.V537L 0.34 deleterious(0.05) benign(0.029) TCGA-OR-A5KB-01 X 110653544 110653544 C T DCX Missense_Mutation p.S109N 0.31 deleterious(0.03) possibly_damaging(0.677) TCGA-OR-A5KB-01 X 110654343 110654343 G T DCX 5'UTR 0.50 TCGA-OR-A5KB-01 X 110964940 110964940 G T ALG13 Splice_Site p.X479_splice 0.19 TCGA-OR-A5KB-01 X 111025191 111025191 C T TRPC5 Missense_Mutation p.R691Q 0.30 tolerated(0.21) benign(0.137) TCGA-OR-A5KB-01 X 111697737 111697737 C A ZCCHC16 5'UTR 0.33 TCGA-OR-A5KB-01 X 111698228 111698228 C A ZCCHC16 Missense_Mutation p.A91E 0.23 tolerated(0.12) benign(0.005) TCGA-OR-A5KB-01 X 111698591 111698591 G C ZCCHC16 Missense_Mutation p.C212S 0.33 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 11316882 11316882 C T AMELX Missense_Mutation p.P134L 0.47 deleterious(0.02) unknown(0) TCGA-OR-A5KB-01 X 114058112 114058112 C T HTR2C Intron 0.48 TCGA-OR-A5KB-01 X 114424922 114424922 C A RBMXL3 Missense_Mutation p.S306R 0.33 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-OR-A5KB-01 X 114425745 114425745 C T RBMXL3 Nonsense_Mutation p.Q581* 0.17 TCGA-OR-A5KB-01 X 114425746 114425746 A G RBMXL3 Missense_Mutation p.Q581R 0.16 tolerated_low_confidence(0.76) benign(0) TCGA-OR-A5KB-01 X 114540824 114540824 G C LUZP4 Missense_Mutation p.E133Q 0.35 deleterious(0.01) benign(0.197) TCGA-OR-A5KB-01 X 115568956 115568956 A C SLC6A14 Splice_Site p.X17_splice 0.22 TCGA-OR-A5KB-01 X 115593996 115593996 C T CT83 Missense_Mutation p.A8T 0.38 tolerated(0.43) possibly_damaging(0.908) TCGA-OR-A5KB-01 X 11682852 11682852 G T ARHGAP6 Missense_Mutation p.R33S 0.29 deleterious_low_confidence(0) benign(0.026) TCGA-OR-A5KB-01 X 117043644 117043644 T A KLHL13 Missense_Mutation p.Q332L 0.37 deleterious(0) probably_damaging(0.915) TCGA-OR-A5KB-01 X 117043657 117043657 G T KLHL13 Missense_Mutation p.Q328K 0.39 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 117700598 117700598 G T DOCK11 Missense_Mutation p.M311I 0.37 tolerated(0.29) benign(0.033) TCGA-OR-A5KB-01 X 117959692 117959692 C A ZCCHC12 Missense_Mutation p.A162E 0.38 tolerated(0.13) possibly_damaging(0.905) TCGA-OR-A5KB-01 X 118215375 118215375 C G KIAA1210 Missense_Mutation p.V1683L 0.34 tolerated(0.25) benign(0.001) TCGA-OR-A5KB-01 X 118221793 118221793 G T KIAA1210 Missense_Mutation p.Q1134K 0.24 tolerated(0.31) benign(0.061) TCGA-OR-A5KB-01 X 118222705 118222705 C A KIAA1210 Nonsense_Mutation p.E830* 0.33 TCGA-OR-A5KB-01 X 118370647 118370647 C A PGRMC1 Nonsense_Mutation p.Y107* 0.32 TCGA-OR-A5KB-01 X 118374361 118374361 G C PGRMC1 Missense_Mutation p.D140H 0.29 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 118723944 118723944 C G NKRF Missense_Mutation p.V497L 0.34 tolerated(0.07) probably_damaging(0.998) TCGA-OR-A5KB-01 X 118723961 118723961 A T NKRF Missense_Mutation p.L491H 0.30 tolerated(0.57) benign(0.015) TCGA-OR-A5KB-01 X 118723962 118723962 G T NKRF Missense_Mutation p.L491I 0.29 tolerated(0.43) benign(0.23) TCGA-OR-A5KB-01 X 118763333 118763333 C T SEPT6 Missense_Mutation p.G410S 0.16 tolerated(0.82) benign(0.03) TCGA-OR-A5KB-01 X 118920485 118920485 C A RPL39 3'UTR 0.56 TCGA-OR-A5KB-01 X 118968823 118968823 T A UPF3B 3'UTR 0.36 TCGA-OR-A5KB-01 X 119010557 119010557 G T NDUFA1 3'UTR 0.36 TCGA-OR-A5KB-01 X 119048832 119048832 C A AKAP14 Silent p.T144T 0.28 TCGA-OR-A5KB-01 X 119391073 119391073 G T ZBTB33 3'UTR 0.42 TCGA-OR-A5KB-01 X 119391345 119391345 C A ZBTB33 3'UTR 0.20 TCGA-OR-A5KB-01 X 120009189 120009189 G C CT47B1 Silent p.T112T 0.36 TCGA-OR-A5KB-01 X 122532571 122532571 C A GRIA3 Silent p.R333R 0.29 TCGA-OR-A5KB-01 X 122747368 122747368 G A THOC2 Missense_Mutation p.S1520F 0.54 tolerated_low_confidence(0.1) possibly_damaging(0.851) TCGA-OR-A5KB-01 X 122755031 122755031 G C THOC2 Nonsense_Mutation p.S1398* 0.21 TCGA-OR-A5KB-01 X 123041047 123041047 G C XIAP 3'UTR 0.44 TCGA-OR-A5KB-01 X 123657285 123657285 C A TENM1 Missense_Mutation p.V988L 0.36 tolerated(0.07) benign(0.05) TCGA-OR-A5KB-01 X 123663787 123663787 G T TENM1 Missense_Mutation p.P900T 0.34 deleterious(0) benign(0.394) TCGA-OR-A5KB-01 X 123680874 123680874 C A TENM1 Missense_Mutation p.C834F 0.37 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 123870853 123870853 G A TENM1 Silent p.L244L 0.32 TCGA-OR-A5KB-01 X 125299535 125299535 C A DCAF12L2 Missense_Mutation p.V125L 0.34 tolerated(0.07) possibly_damaging(0.743) TCGA-OR-A5KB-01 X 125686226 125686226 C G DCAF12L1 Silent p.V122V 0.32 TCGA-OR-A5KB-01 X 125954967 125954967 G T CXorf64 Missense_Mutation p.A116S 0.37 deleterious(0.03) probably_damaging(0.931) TCGA-OR-A5KB-01 X 127185766 127185766 A T ACTRT1 Missense_Mutation p.H140Q 0.30 tolerated(1) possibly_damaging(0.85) TCGA-OR-A5KB-01 X 128649928 128649928 G T SMARCA1 Missense_Mutation p.L158M 0.41 tolerated(0.11) benign(0.285) TCGA-OR-A5KB-01 X 128781522 128781522 C - APLN 3'UTR 0.29 TCGA-OR-A5KB-01 X 128873141 128873141 C T XPNPEP2 5'UTR 0.26 TCGA-OR-A5KB-01 X 128873148 128873148 C A XPNPEP2 5'UTR 0.42 TCGA-OR-A5KB-01 X 128888456 128888456 C T XPNPEP2 Silent p.D372D 0.28 TCGA-OR-A5KB-01 X 128940383 128940383 G T ZDHHC9 Missense_Mutation p.P353Q 0.32 tolerated_low_confidence(0.27) unknown(0) TCGA-OR-A5KB-01 X 129053172 129053172 G A UTP14A Missense_Mutation p.E187K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-OR-A5KB-01 X 129147234 129147234 G T BCORL1 Missense_Mutation p.L162F 0.27 unknown(0) TCGA-OR-A5KB-01 X 129147235 129147235 G T BCORL1 Missense_Mutation p.D163Y 0.27 unknown(0) TCGA-OR-A5KB-01 X 129148844 129148844 C A BCORL1 Missense_Mutation p.P699Q 0.34 benign(0.192) TCGA-OR-A5KB-01 X 129154972 129154972 C A BCORL1 Missense_Mutation p.P1152T 0.36 benign(0.079) TCGA-OR-A5KB-01 X 129173157 129173157 G T BCORL1 Missense_Mutation p.W1506C 0.27 probably_damaging(1) TCGA-OR-A5KB-01 X 129215319 129215319 G T ELF4 5'UTR 0.43 TCGA-OR-A5KB-01 X 129289211 129289211 C A AIFM1 Intron 0.36 TCGA-OR-A5KB-01 X 129843245 129843245 C A ENOX2 Missense_Mutation p.W7C 0.32 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-OR-A5KB-01 X 130192232 130192232 G C ARHGAP36 5'UTR 0.32 TCGA-OR-A5KB-01 X 130222738 130222738 C G ARHGAP36 Silent p.G541G 0.34 TCGA-OR-A5KB-01 X 130419880 130419880 G T IGSF1 Silent p.I80I 0.33 TCGA-OR-A5KB-01 X 13056583 13056583 C T FAM9C Missense_Mutation p.G160R 0.47 tolerated_low_confidence(0.41) benign(0) TCGA-OR-A5KB-01 X 130678317 130678317 C A OR13H1 Silent p.P90P 0.28 TCGA-OR-A5KB-01 X 130678318 130678318 T A OR13H1 Missense_Mutation p.Y91N 0.28 tolerated(0.14) benign(0.045) TCGA-OR-A5KB-01 X 131214283 131214283 T C FRMD7 Missense_Mutation p.Q306R 0.29 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 X 131348263 131348263 C A RAP2C Missense_Mutation p.R162M 0.33 deleterious(0) probably_damaging(0.933) TCGA-OR-A5KB-01 X 134167254 134167254 G T FAM127A 3'UTR 0.38 TCGA-OR-A5KB-01 X 134167495 134167495 G C FAM127A 3'UTR 0.28 TCGA-OR-A5KB-01 X 134185625 134185625 C A FAM127B 3'UTR 0.41 TCGA-OR-A5KB-01 X 134420996 134420996 C A ZNF75D 3'UTR 0.25 TCGA-OR-A5KB-01 X 134482373 134482373 C T ZNF449 Intron 0.41 TCGA-OR-A5KB-01 X 134679347 134679347 G T DDX26B Splice_Site p.X64_splice 0.35 TCGA-OR-A5KB-01 X 134679497 134679497 G T DDX26B Missense_Mutation p.Q113H 0.23 deleterious(0) benign(0.159) TCGA-OR-A5KB-01 X 134679498 134679498 G T DDX26B Splice_Site p.X113_splice 0.23 TCGA-OR-A5KB-01 X 134707987 134707987 G C DDX26B Missense_Mutation p.D544H 0.35 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KB-01 X 134992242 134992242 G T SAGE1 Missense_Mutation p.A593S 0.33 deleterious(0.02) benign(0.189) TCGA-OR-A5KB-01 X 135098854 135098854 G T SLC9A6 Missense_Mutation p.M429I 0.42 tolerated(0.43) probably_damaging(0.981) TCGA-OR-A5KB-01 X 135112310 135112310 C A SLC9A6 Missense_Mutation p.Q546K 0.39 tolerated(0.26) benign(0.273) TCGA-OR-A5KB-01 X 135288629 135288629 C G FHL1 Missense_Mutation p.P13R 0.17 deleterious(0.01) benign(0.077) TCGA-OR-A5KB-01 X 135313958 135313958 C T MAP7D3 Silent p.P386P 0.44 TCGA-OR-A5KB-01 X 135428212 135428212 G C GPR112 Missense_Mutation p.V783L 0.36 tolerated(0.09) benign(0.018) TCGA-OR-A5KB-01 X 135430562 135430562 C A GPR112 Missense_Mutation p.P1566Q 0.30 deleterious(0) possibly_damaging(0.49) TCGA-OR-A5KB-01 X 135474475 135474475 C A GPR112 Missense_Mutation p.P2666T 0.27 deleterious(0) probably_damaging(0.967) TCGA-OR-A5KB-01 X 137749950 137749950 G T FGF13 Intron 0.44 TCGA-OR-A5KB-01 X 137790993 137790993 C A FGF13 Missense_Mutation p.E105D 0.27 tolerated(0.57) benign(0.017) TCGA-OR-A5KB-01 X 138699719 138699719 G T MCF2 Silent p.R378R 0.29 TCGA-OR-A5KB-01 X 140993233 140993233 C G MAGEC1 Missense_Mutation p.L15V 0.25 tolerated_low_confidence(0.15) benign(0.364) TCGA-OR-A5KB-01 X 141291129 141291129 G T MAGEC2 Silent p.T215T 0.40 TCGA-OR-A5KB-01 X 142605191 142605191 C A SPANXN3 Missense_Mutation p.G10V 0.27 deleterious(0) probably_damaging(0.992) TCGA-OR-A5KB-01 X 142717517 142717517 C T SLITRK4 Missense_Mutation p.D470N 0.39 tolerated(0.37) possibly_damaging(0.756) TCGA-OR-A5KB-01 X 142967266 142967266 G T UBE2NL Missense_Mutation p.G22C 0.38 deleterious(0) probably_damaging(0.988) TCGA-OR-A5KB-01 X 144904123 144904123 C A SLITRK2 Silent p.P60P 0.35 TCGA-OR-A5KB-01 X 144905093 144905093 G T SLITRK2 Missense_Mutation p.G384W 0.42 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KB-01 X 144905170 144905170 C A SLITRK2 Missense_Mutation p.N409K 0.26 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 145078780 145078780 G T MIR892B RNA 0.37 TCGA-OR-A5KB-01 X 146312360 146312360 G C MIR506 RNA 0.30 TCGA-OR-A5KB-01 X 146341225 146341225 C A MIR509-3 RNA 0.20 TCGA-OR-A5KB-01 X 147030346 147030346 C A FMR1 Silent p.L627L 0.28 TCGA-OR-A5KB-01 X 147985840 147985840 C G AFF2 Intron 0.29 TCGA-OR-A5KB-01 X 148049222 148049222 G T AFF2 Silent p.L1089L 0.34 TCGA-OR-A5KB-01 X 148582538 148582538 G T IDS Missense_Mutation p.P150Q 0.30 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 148631017 148631017 C A CXorf40A 3'Flank 0.29 TCGA-OR-A5KB-01 X 148797322 148797322 C A MAGEA11 Missense_Mutation p.T84N 0.35 tolerated(0.17) possibly_damaging(0.622) TCGA-OR-A5KB-01 X 149639349 149639349 C A MAMLD1 Missense_Mutation p.Q477K 0.35 tolerated(0.31) possibly_damaging(0.721) TCGA-OR-A5KB-01 X 149818249 149818249 G C MTM1 Missense_Mutation p.D310H 0.31 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 149905230 149905230 C A MTMR1 Missense_Mutation p.T407K 0.34 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 150348568 150348568 C G GPR50 Nonsense_Mutation p.Y171* 0.35 TCGA-OR-A5KB-01 X 150349375 150349375 G T GPR50 Missense_Mutation p.K440N 0.34 deleterious_low_confidence(0.03) benign(0.036) TCGA-OR-A5KB-01 X 150891194 150891194 C G FATE1 Missense_Mutation p.A172G 0.33 tolerated(0.12) benign(0.09) TCGA-OR-A5KB-01 X 150911588 150911588 G T CNGA2 Missense_Mutation p.V205F 0.32 deleterious(0) probably_damaging(0.988) TCGA-OR-A5KB-01 X 150911921 150911921 G T CNGA2 Nonsense_Mutation p.E316* 0.30 TCGA-OR-A5KB-01 X 150912769 150912769 G A CNGA2 Silent p.Q598Q 0.37 TCGA-OR-A5KB-01 X 150913116 150913116 C A CNGA2 3'UTR 0.50 TCGA-OR-A5KB-01 X 151092271 151092271 T A MAGEA4 Silent p.P45P 0.32 TCGA-OR-A5KB-01 X 152159412 152159412 G C PNMA5 Missense_Mutation p.S244C 0.44 deleterious(0.03) probably_damaging(0.927) TCGA-OR-A5KB-01 X 152226512 152226512 C T PNMA3 Missense_Mutation p.P367L 0.31 tolerated(0.67) benign(0) TCGA-OR-A5KB-01 X 152226745 152226745 G C PNMA3 Missense_Mutation p.E445Q 0.33 tolerated(0.06) benign(0.075) TCGA-OR-A5KB-01 X 152228255 152228255 C A PNMA3 3'UTR 0.37 TCGA-OR-A5KB-01 X 152482814 152482814 G T MAGEA1 Missense_Mutation p.T66N 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-OR-A5KB-01 X 152710779 152710779 C A TREX2 Missense_Mutation p.R37L 0.36 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KB-01 X 152720366 152720366 C A HAUS7 Intron 0.39 TCGA-OR-A5KB-01 X 152807877 152807877 C A ATP2B3 Nonsense_Mutation p.S254* 0.38 TCGA-OR-A5KB-01 X 152823605 152823605 C A ATP2B3 Silent p.S823S 0.35 TCGA-OR-A5KB-01 X 152936621 152936621 G T PNCK Nonsense_Mutation p.Y296* 0.32 TCGA-OR-A5KB-01 X 152958807 152958807 C A SLC6A8 Missense_Mutation p.N334K 0.33 tolerated(0.19) possibly_damaging(0.762) TCGA-OR-A5KB-01 X 153035684 153035684 A T PLXNB3 Silent p.P612P 0.33 TCGA-OR-A5KB-01 X 153036070 153036070 C A PLXNB3 Silent p.G684G 0.33 TCGA-OR-A5KB-01 X 153036423 153036423 C A PLXNB3 Missense_Mutation p.L737M 0.36 tolerated(0.11) possibly_damaging(0.605) TCGA-OR-A5KB-01 X 153042416 153042416 G T PLXNB3 Missense_Mutation p.Q1659H 0.39 tolerated(0.34) benign(0.018) TCGA-OR-A5KB-01 X 153055722 153055722 C G IDH3G Missense_Mutation p.R54P 0.29 deleterious(0) probably_damaging(0.968) TCGA-OR-A5KB-01 X 153133825 153133825 G T L1CAM Silent p.P545P 0.39 TCGA-OR-A5KB-01 X 153172266 153172266 G A AVPR2 3'UTR 0.40 TCGA-OR-A5KB-01 X 153210189 153210189 C A RENBP 5'Flank 0.28 TCGA-OR-A5KB-01 X 153220099 153220099 C A HCFC1 Nonsense_Mutation p.E1251* 0.40 TCGA-OR-A5KB-01 X 153357742 153357742 G C MECP2 Intron 0.43 TCGA-OR-A5KB-01 X 153716005 153716005 G T SLC10A3 Missense_Mutation p.N425K 0.39 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 X 153762677 153762677 C G G6PD Missense_Mutation p.G204R 0.42 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 X 153927602 153927602 G T GAB3 Missense_Mutation p.P438T 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 154001499 154001499 C A DKC1 Missense_Mutation p.P377H 0.41 deleterious(0) probably_damaging(0.988) TCGA-OR-A5KB-01 X 154003289 154003289 C G DKC1 Intron 0.38 TCGA-OR-A5KB-01 X 154157538 154157538 G C F8 Silent p.G1509G 0.34 TCGA-OR-A5KB-01 X 154158316 154158316 C A F8 Missense_Mutation p.S1250I 0.40 deleterious(0.03) benign(0.03) TCGA-OR-A5KB-01 X 154176151 154176151 C T F8 Silent p.Q645Q 0.42 TCGA-OR-A5KB-01 X 154294183 154294183 C A MTCP1 Nonsense_Mutation p.E35* 0.35 TCGA-OR-A5KB-01 X 154577681 154577681 C A RP13-228J13.1 Splice_Site 0.20 TCGA-OR-A5KB-01 X 155006916 155006916 G C SPRY3 3'UTR 0.33 TCGA-OR-A5KB-01 X 155010439 155010439 C A SPRY3 3'UTR 0.25 TCGA-OR-A5KB-01 X 155239857 155239857 G T IL9R Missense_Mutation p.G450V 0.25 tolerated(0.14) benign(0.319) TCGA-OR-A5KB-01 X 155239892 155239892 C A IL9R Missense_Mutation p.Q462K 0.21 tolerated(0.11) benign(0.441) TCGA-OR-A5KB-01 X 15841143 15841143 A G ZRSR2 Silent p.K409K 0.58 TCGA-OR-A5KB-01 X 16168476 16168476 G A GRPR Silent p.L154L 0.57 TCGA-OR-A5KB-01 X 18911675 18911675 C A PHKA2 Missense_Mutation p.M1212I 0.43 tolerated(0.09) benign(0.224) TCGA-OR-A5KB-01 X 18942242 18942242 G A PHKA2 Silent p.G575G 0.38 TCGA-OR-A5KB-01 X 19046318 19046318 C A GPR64 Nonsense_Mutation p.E133* 0.31 TCGA-OR-A5KB-01 X 26212653 26212653 G T MAGEB6 Missense_Mutation p.K230N 0.53 deleterious(0) possibly_damaging(0.587) TCGA-OR-A5KB-01 X 26212780 26212780 G T MAGEB6 Nonsense_Mutation p.E273* 0.51 TCGA-OR-A5KB-01 X 2637737 2637737 G T CD99 Nonsense_Mutation p.G62* 0.54 TCGA-OR-A5KB-01 X 27998833 27998833 G T DCAF8L1 Missense_Mutation p.R207S 0.51 tolerated(0.44) benign(0.032) TCGA-OR-A5KB-01 X 30253978 30253978 C A MAGEB3 Intron 0.57 TCGA-OR-A5KB-01 X 30255111 30255111 G T MAGEB3 3'UTR 0.56 TCGA-OR-A5KB-01 X 30268640 30268640 T A MAGEB1 Silent p.R10R 0.51 TCGA-OR-A5KB-01 X 30849617 30849617 C A TAB3 Missense_Mutation p.C689F 0.19 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 X 30864170 30864170 C A TAB3 Intron 0.15 TCGA-OR-A5KB-01 X 31090008 31090008 G C FTHL17 Missense_Mutation p.I21M 0.24 deleterious(0.01) probably_damaging(0.918) TCGA-OR-A5KB-01 X 31222119 31222119 C T DMD Missense_Mutation p.G3256S 0.23 probably_damaging(0.96) TCGA-OR-A5KB-01 X 322316 322316 G A PPP2R3B Missense_Mutation p.R112W 0.57 tolerated(0.08) benign(0.004) TCGA-OR-A5KB-01 X 3229122 3229122 G A MXRA5 Silent p.P2374P 0.48 TCGA-OR-A5KB-01 X 32360319 32360319 C A DMD Silent p.G1940G 0.26 TCGA-OR-A5KB-01 X 32360320 32360320 C A DMD Missense_Mutation p.G1940V 0.26 probably_damaging(0.979) TCGA-OR-A5KB-01 X 3241638 3241638 C G MXRA5 Silent p.V696V 0.63 TCGA-OR-A5KB-01 X 3248114 3248114 C A MXRA5 Silent p.P218P 0.51 TCGA-OR-A5KB-01 X 34961915 34961915 C A FAM47B Missense_Mutation p.P323T 0.50 tolerated(0.17) probably_damaging(0.999) TCGA-OR-A5KB-01 X 35971805 35971805 T G CXorf22 Missense_Mutation p.F381L 0.22 deleterious(0.05) possibly_damaging(0.676) TCGA-OR-A5KB-01 X 36319291 36319291 G T CXorf30 Missense_Mutation p.G102V 0.55 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 X 37028109 37028109 C A FAM47C Missense_Mutation p.S542R 0.44 tolerated_low_confidence(0.58) unknown(0) TCGA-OR-A5KB-01 X 37301197 37301197 A G PRRG1 Intron 0.50 TCGA-OR-A5KB-01 X 41025466 41025466 G C USP9X Missense_Mutation p.R776T 0.61 deleterious(0) benign(0.118) TCGA-OR-A5KB-01 X 43515504 43515504 C T MAOA 5'UTR 0.33 TCGA-OR-A5KB-01 X 45010882 45010882 C A CXorf36 3'UTR 0.45 TCGA-OR-A5KB-01 X 46433693 46433693 C A CHST7 Silent p.T109T 0.21 TCGA-OR-A5KB-01 X 46541866 46541866 C A SLC9A7 Missense_Mutation p.V144L 0.16 tolerated(0.41) benign(0.06) TCGA-OR-A5KB-01 X 47002022 47002022 G T NDUFB11 Missense_Mutation p.P110H 0.24 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KB-01 X 47002127 47002127 C A NDUFB11 Missense_Mutation p.G75V 0.19 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 47032530 47032530 C A RBM10 Missense_Mutation p.R146S 0.18 deleterious(0) possibly_damaging(0.828) TCGA-OR-A5KB-01 X 47705685 47705685 G T ZNF81 Missense_Mutation p.A7S 0.26 tolerated(0.6) benign(0.002) TCGA-OR-A5KB-01 X 47919260 47919260 A T ZNF630 Missense_Mutation p.L191I 0.26 tolerated(0.19) benign(0.107) TCGA-OR-A5KB-01 X 48319044 48319044 C A SLC38A5 Silent p.V353V 0.21 TCGA-OR-A5KB-01 X 48433568 48433568 C T RBM3 5'UTR 0.44 TCGA-OR-A5KB-01 X 48456318 48456318 G T WDR13 5'UTR 0.19 TCGA-OR-A5KB-01 X 48547809 48547809 C T WAS Missense_Mutation p.A480V 0.22 tolerated(0.39) unknown(0) TCGA-OR-A5KB-01 X 48631881 48631881 C A GLOD5 3'UTR 0.24 TCGA-OR-A5KB-01 X 48676461 48676461 G T HDAC6 Missense_Mutation p.D647Y 0.18 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 48678641 48678641 C A HDAC6 Silent p.G772G 0.19 TCGA-OR-A5KB-01 X 48755765 48755765 C T PQBP1 5'UTR 0.20 TCGA-OR-A5KB-01 X 48814313 48814313 C A OTUD5 Missense_Mutation p.G174C 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 48822694 48822694 C G KCND1 Missense_Mutation p.E496Q 0.19 tolerated_low_confidence(0.06) benign(0.119) TCGA-OR-A5KB-01 X 48832699 48832699 T A GRIPAP1 Missense_Mutation p.Q713L 0.20 possibly_damaging(0.624) TCGA-OR-A5KB-01 X 48853737 48853737 C G GRIPAP1 Missense_Mutation p.M77I 0.24 possibly_damaging(0.487) TCGA-OR-A5KB-01 X 48929617 48929617 C G PRAF2 Missense_Mutation p.E150Q 0.26 tolerated(0.11) probably_damaging(0.979) TCGA-OR-A5KB-01 X 48935536 48935536 G A WDR45 Silent p.R30R 0.22 TCGA-OR-A5KB-01 X 49074374 49074374 C T CACNA1F Missense_Mutation p.G1018R 0.28 deleterious(0) benign(0.143) TCGA-OR-A5KB-01 X 49106892 49106892 C G CCDC22 3'UTR 0.50 TCGA-OR-A5KB-01 X 49142338 49142338 G T PPP1R3F Missense_Mutation p.D396Y 0.15 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-OR-A5KB-01 X 49851057 49851057 C T CLCN5 Missense_Mutation p.R363C 0.24 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 49957836 49957836 G T AKAP4 Missense_Mutation p.Q510K 0.21 tolerated(0.36) benign(0.156) TCGA-OR-A5KB-01 X 50054083 50054083 G - CCNB3 Frame_Shift_Del p.G972Efs*14 0.20 TCGA-OR-A5KB-01 X 50121627 50121627 C A DGKK RNA 0.43 TCGA-OR-A5KB-01 X 50377365 50377365 G T SHROOM4 Silent p.R570R 0.25 TCGA-OR-A5KB-01 X 50377405 50377405 C G SHROOM4 Silent p.G556G 0.21 TCGA-OR-A5KB-01 X 51075872 51075872 C A NUDT10 Silent p.R19R 0.17 TCGA-OR-A5KB-01 X 51150538 51150538 C A CXorf67 Missense_Mutation p.L224I 0.26 tolerated(0.21) benign(0.001) TCGA-OR-A5KB-01 X 51150664 51150664 C A CXorf67 Missense_Mutation p.P266T 0.19 deleterious(0.01) benign(0.086) TCGA-OR-A5KB-01 X 51150704 51150704 G C CXorf67 Missense_Mutation p.R279P 0.54 tolerated(0.29) benign(0.236) TCGA-OR-A5KB-01 X 51151502 51151502 C A CXorf67 3'UTR 0.18 TCGA-OR-A5KB-01 X 51151504 51151504 G A CXorf67 3'UTR 0.18 TCGA-OR-A5KB-01 X 51487049 51487049 T A GSPT2 Silent p.P109P 0.15 TCGA-OR-A5KB-01 X 53105990 53105990 G T GPR173 Missense_Mutation p.D63Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-OR-A5KB-01 X 53254152 53254152 G A KDM5C 5'UTR 0.25 TCGA-OR-A5KB-01 X 53278002 53278002 C A IQSEC2 Missense_Mutation p.G787V 0.43 deleterious(0) possibly_damaging(0.729) TCGA-OR-A5KB-01 X 53279726 53279726 C A IQSEC2 Missense_Mutation p.G678C 0.25 deleterious(0.01) probably_damaging(0.923) TCGA-OR-A5KB-01 X 53279966 53279966 G C IQSEC2 Missense_Mutation p.P598A 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 53561133 53561133 C T HUWE1 Missense_Mutation p.R4286H 0.24 unknown(0) TCGA-OR-A5KB-01 X 53602737 53602737 C A HUWE1 Missense_Mutation p.D1966Y 0.17 possibly_damaging(0.51) TCGA-OR-A5KB-01 X 53634661 53634661 C A HUWE1 Splice_Site p.X774_splice 0.09 TCGA-OR-A5KB-01 X 54228531 54228531 C A WNK3 Missense_Mutation p.D1656Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-OR-A5KB-01 X 54263789 54263789 C G WNK3 Missense_Mutation p.E1404Q 0.10 tolerated(0.12) benign(0.057) TCGA-OR-A5KB-01 X 54263899 54263899 G T WNK3 Missense_Mutation p.S1367Y 0.29 deleterious(0.02) possibly_damaging(0.602) TCGA-OR-A5KB-01 X 54586952 54586952 G C GNL3L Splice_Site p.X556_splice 0.20 TCGA-OR-A5KB-01 X 54800536 54800536 A C ITIH6 Missense_Mutation p.M294R 0.18 deleterious(0) possibly_damaging(0.827) TCGA-OR-A5KB-01 X 54817377 54817377 A T ITIH6 Nonsense_Mutation p.L170* 0.20 TCGA-OR-A5KB-01 X 55057466 55057466 C A ALAS2 5'UTR 0.35 TCGA-OR-A5KB-01 X 55513148 55513148 T A USP51 3'UTR 0.27 TCGA-OR-A5KB-01 X 56259773 56259773 C A KLF8 Silent p.V2V 0.20 TCGA-OR-A5KB-01 X 57020873 57020873 G T SPIN3 Missense_Mutation p.P170T 0.18 deleterious(0.04) probably_damaging(0.98) TCGA-OR-A5KB-01 X 57146348 57146348 A T SPIN2B Missense_Mutation p.Y239N 0.20 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KB-01 X 57146372 57146372 G T SPIN2B Missense_Mutation p.Q231K 0.18 tolerated(0.07) benign(0.378) TCGA-OR-A5KB-01 X 57162366 57162366 G C SPIN2A Missense_Mutation p.S222C 0.22 deleterious(0.02) possibly_damaging(0.829) TCGA-OR-A5KB-01 X 57313211 57313211 G T FAAH2 5'UTR 0.26 TCGA-OR-A5KB-01 X 57621558 57621558 G T ZXDB 3'UTR 0.16 TCGA-OR-A5KB-01 X 57937034 57937034 G T ZXDA 5'UTR 0.19 TCGA-OR-A5KB-01 X 6069626 6069626 A T NLGN4X 5'UTR 0.44 TCGA-OR-A5KB-01 X 65412128 65412128 G T HEPH Missense_Mutation p.R461I 0.54 tolerated(0.26) benign(0.042) TCGA-OR-A5KB-01 X 65486583 65486583 C G HEPH 3'UTR 0.70 TCGA-OR-A5KB-01 X 68748874 68748874 C G FAM155B Missense_Mutation p.S300R 0.60 tolerated(0.07) probably_damaging(0.991) TCGA-OR-A5KB-01 X 69282886 69282886 G T OTUD6A Missense_Mutation p.R171L 0.58 deleterious(0) probably_damaging(1) TCGA-OR-A5KB-01 X 69646560 69646560 G A GDPD2 Silent p.V175V 0.64 TCGA-OR-A5KB-01 X 70776864 70776864 A T OGT Missense_Mutation p.D410V 0.44 deleterious(0.03) probably_damaging(0.927) TCGA-OR-A5KB-01 X 71354404 71354404 G A NHSL2 Missense_Mutation p.V204M 0.55 deleterious(0.01) probably_damaging(0.991) TCGA-OR-A5KB-01 X 77912640 77912640 G T ZCCHC5 Silent p.I426I 0.61 TCGA-OR-A5KB-01 X 79278676 79278676 G T TBX22 Missense_Mutation p.G98V 0.53 deleterious(0.03) probably_damaging(1) TCGA-OR-A5KB-01 X 79932025 79932025 C A BRWD3 3'UTR 0.64 TCGA-OR-A5KB-01 X 79971694 79971694 C A BRWD3 Missense_Mutation p.V763F 0.33 tolerated(0.77) benign(0.005) TCGA-OR-A5KB-01 X 84362970 84362970 G T SATL1 Missense_Mutation p.S335R 0.54 tolerated(0.49) possibly_damaging(0.467) TCGA-OR-A5KB-01 X 85404068 85404068 C T DACH2 Silent p.T148T 0.48 TCGA-OR-A5KB-01 X 86890618 86890618 T A KLHL4 Missense_Mutation p.F590I 0.25 deleterious(0) possibly_damaging(0.543) TCGA-OR-A5KB-01 X 90689672 90689672 G T PABPC5 5'Flank 0.47 TCGA-OR-A5KB-01 X 91132646 91132646 T A PCDH11X Silent p.S469S 0.61 TCGA-OR-A5KB-01 X 91133492 91133492 C G PCDH11X Silent p.V751V 0.59 TCGA-OR-A5KB-01 X 91133563 91133563 C A PCDH11X Nonsense_Mutation p.S775* 0.60 TCGA-OR-A5KB-01 X 91873458 91873458 G C PCDH11X Missense_Mutation p.R1188P 0.15 tolerated_low_confidence(1) benign(0) TCGA-OR-A5KB-01 X 91873488 91873488 G T PCDH11X Missense_Mutation p.S1198I 0.16 deleterious_low_confidence(0.01) benign(0.432) TCGA-OR-A5KB-01 X 96724708 96724708 G T DIAPH2 Intron 0.14 TCGA-OR-A5KB-01 X 99661493 99661493 G C PCDH19 Missense_Mutation p.I701M 0.38 deleterious(0.01) possibly_damaging(0.643) TCGA-OR-A5KB-01 X 99854700 99854700 C A TNMD Missense_Mutation p.L314M 0.18 tolerated(0.07) benign(0.317) TCGA-OR-A5KB-01 X 99890216 99890216 C A TSPAN6 Nonsense_Mutation p.E104* 0.22 TCGA-OR-A5KB-01 X 99930991 99930991 C A SYTL4 3'UTR 0.20 TCGA-OR-A5KO-01 11 122817236 122817236 G T C11orf63 Silent p.T555T 0.91 TCGA-OR-A5KO-01 11 6023924 6023924 C T OR56A4 Missense_Mutation p.C152Y 0.87 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KO-01 12 123214708 123214708 G C HCAR1 Missense_Mutation p.A60G 0.93 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KO-01 12 49445552 49445552 T G KMT2D Silent p.P638P 0.75 TCGA-OR-A5KO-01 12 97082757 97082757 T C C12orf55 Silent p.F2026F 0.89 TCGA-OR-A5KO-01 13 88330510 88330517 GCCAGTTC - SLITRK5 Frame_Shift_Del p.S956Ifs*13 0.93 TCGA-OR-A5KO-01 14 96987355 96987355 G T PAPOLA Missense_Mutation p.L65F 0.46 deleterious(0) possibly_damaging(0.873) TCGA-OR-A5KO-01 15 90904066 90904066 G C ZNF774 Missense_Mutation p.V335L 0.09 tolerated(0.14) benign(0.015) TCGA-OR-A5KO-01 16 20384188 20384188 C A PDILT Missense_Mutation p.S285I 0.46 deleterious(0.01) possibly_damaging(0.642) TCGA-OR-A5KO-01 16 77389876 77389876 C A ADAMTS18 Missense_Mutation p.W474L 0.50 deleterious(0) probably_damaging(1) TCGA-OR-A5KO-01 16 82660626 82660626 C G CDH13 5'UTR 0.44 TCGA-OR-A5KO-01 17 7574012 7574012 C A TP53 Nonsense_Mutation p.E339* 0.84 TCGA-OR-A5KO-01 18 24497051 24497051 C A CHST9 Missense_Mutation p.W168C 0.85 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KO-01 19 15226024 15226024 G C ILVBL 3'UTR 0.50 TCGA-OR-A5KO-01 19 2934196 2934196 G C ZNF77 Missense_Mutation p.S310C 0.42 deleterious(0.04) probably_damaging(0.983) TCGA-OR-A5KO-01 19 40520223 40520223 G T ZNF546 Missense_Mutation p.R349I 0.49 deleterious(0) possibly_damaging(0.671) TCGA-OR-A5KO-01 19 4216002 4216002 G A ANKRD24 Missense_Mutation p.V409I 0.44 tolerated(0.43) benign(0.433) TCGA-OR-A5KO-01 1 22180824 22180824 G C HSPG2 Missense_Mutation p.R2101G 0.85 probably_damaging(0.962) TCGA-OR-A5KO-01 1 63885045 63885045 G T ALG6 Missense_Mutation p.S331I 0.11 deleterious(0) benign(0.022) TCGA-OR-A5KO-01 2 217341854 217341854 G A SMARCAL1 Missense_Mutation p.R817H 0.89 deleterious(0) probably_damaging(1) TCGA-OR-A5KO-01 4 103644191 103644191 T C MANBA Missense_Mutation p.D129G 0.39 deleterious(0.01) probably_damaging(0.938) TCGA-OR-A5KO-01 5 21752043 21752043 C A CDH12 Missense_Mutation p.A730S 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-OR-A5KO-01 6 106968127 106968127 C T AIM1 Missense_Mutation p.S607F 0.33 deleterious_low_confidence(0.02) benign(0.035) TCGA-OR-A5KO-01 6 106968157 106968157 C T AIM1 Missense_Mutation p.S617F 0.34 deleterious_low_confidence(0) possibly_damaging(0.671) TCGA-OR-A5KO-01 6 106968291 106968291 C T AIM1 Missense_Mutation p.P662S 0.30 tolerated(0.55) benign(0.012) TCGA-OR-A5KO-01 6 106968355 106968355 C T AIM1 Missense_Mutation p.S683F 0.33 deleterious(0) probably_damaging(0.959) TCGA-OR-A5KO-01 6 106978066 106978066 C T AIM1 Missense_Mutation p.H1124Y 0.49 deleterious(0) benign(0.187) TCGA-OR-A5KO-01 6 111912951 111912951 G A TRAF3IP2 Silent p.V113V 0.49 TCGA-OR-A5KO-01 6 29797691 29797691 T C HLA-G Missense_Mutation p.W332R 0.46 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-OR-A5KO-01 6 30866949 30866949 C T DDR1 Missense_Mutation p.P879L 0.46 deleterious(0) probably_damaging(0.971) TCGA-OR-A5KO-01 6 31895404 31895404 C T C2 5'UTR 0.52 TCGA-OR-A5KO-01 6 32006983 32006983 C T CYP21A2 Silent p.S135S 0.46 TCGA-OR-A5KO-01 6 80626305 80626305 C G ELOVL4 3'UTR 0.55 TCGA-OR-A5KO-01 8 125109589 125109589 G A FER1L6 Silent p.R1591R 0.43 TCGA-OR-A5KO-01 9 15724809 15724809 G T CCDC171 Missense_Mutation p.E509D 0.37 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KO-01 X 102564587 102564587 A G BEX2 Silent p.H138H 0.46 TCGA-OR-A5KO-01 X 120009056 120009056 C T CT47B1 Missense_Mutation p.A157T 0.42 tolerated(1) probably_damaging(0.982) TCGA-OR-A5KO-01 X 142113747 142113747 G T SPANXN4 5'UTR 0.28 TCGA-OR-A5KO-01 X 53430781 53430781 G C SMC1A Silent p.R747R 0.42 TCGA-OR-A5KO-01 X 78217252 78217252 T C P2RY10 3'UTR 0.43 TCGA-OR-A5KP-01 10 112341738 112341738 C T SMC3 Missense_Mutation p.T202I 0.16 deleterious(0.01) benign(0.356) TCGA-OR-A5KP-01 10 5436106 5436106 C A TUBAL3 Missense_Mutation p.V239F 0.24 deleterious_low_confidence(0) benign(0.074) TCGA-OR-A5KP-01 10 5436107 5436107 C A TUBAL3 Silent p.V238V 0.25 TCGA-OR-A5KP-01 10 70406351 70406351 A C TET1 Missense_Mutation p.T1289P 0.21 deleterious(0.01) benign(0.372) TCGA-OR-A5KP-01 10 71017117 71017117 A G HKDC1 Missense_Mutation p.D656G 0.12 deleterious(0) probably_damaging(1) TCGA-OR-A5KP-01 10 89624156 89624158 AGA - PTEN 5'UTR 0.23 TCGA-OR-A5KP-01 11 108123627 108123627 G - ATM Frame_Shift_Del p.S629Tfs*20 0.22 TCGA-OR-A5KP-01 11 18195200 18195200 C T MRGPRX4 Missense_Mutation p.R133C 0.19 deleterious(0.02) benign(0.16) TCGA-OR-A5KP-01 11 67166486 67166487 AG - PPP1CA Frame_Shift_Del p.S235Ffs*53 0.23 TCGA-OR-A5KP-01 11 6898684 6898684 C G OR10A4 Missense_Mutation p.S269C 0.21 deleterious(0) benign(0.033) TCGA-OR-A5KP-01 11 86086270 86086270 C T CCDC81 Missense_Mutation p.S22L 0.25 tolerated(0.16) benign(0.021) TCGA-OR-A5KP-01 12 110968498 110968498 G A RAD9B Intron 0.11 TCGA-OR-A5KP-01 12 124232193 124232196 TCTT - ATP6V0A2 Frame_Shift_Del p.F550Kfs*2 0.11 TCGA-OR-A5KP-01 12 53233007 53233007 C T KRT78 Missense_Mutation p.D485N 0.17 tolerated(0.18) benign(0.053) TCGA-OR-A5KP-01 12 53822782 53822782 C T AMHR2 Missense_Mutation p.R319C 0.18 tolerated(0.06) possibly_damaging(0.898) TCGA-OR-A5KP-01 12 74932091 74932092 AA - ATXN7L3B Frame_Shift_Del p.K67Rfs*19 0.12 TCGA-OR-A5KP-01 12 78583826 78583826 C A NAV3 Missense_Mutation p.Q2018K 0.10 deleterious(0.01) benign(0.442) TCGA-OR-A5KP-01 12 97338562 97338562 C T NEDD1 Missense_Mutation p.S555F 0.05 deleterious(0.01) possibly_damaging(0.632) TCGA-OR-A5KP-01 13 103397238 103397238 C - LINC00283 RNA 0.10 TCGA-OR-A5KP-01 13 20641036 20641036 A G ZMYM2 Missense_Mutation p.S1060G 0.29 tolerated(0.13) benign(0.32) TCGA-OR-A5KP-01 13 24304549 24304549 C G MIPEP Missense_Mutation p.V694L 0.16 deleterious(0.02) possibly_damaging(0.515) TCGA-OR-A5KP-01 14 29237445 29237445 C T FOXG1 Silent p.R320R 0.05 TCGA-OR-A5KP-01 14 73711367 73711367 C A PAPLN Silent p.R24R 0.04 TCGA-OR-A5KP-01 15 25616489 25616489 G A UBE3A Missense_Mutation p.P281S 0.10 tolerated(0.35) benign(0.037) TCGA-OR-A5KP-01 15 35176926 35176926 G T AQR Missense_Mutation p.R943S 0.07 deleterious(0) probably_damaging(0.992) TCGA-OR-A5KP-01 16 46714715 46714715 G C VPS35 Missense_Mutation p.S125C 0.10 deleterious(0.03) benign(0.03) TCGA-OR-A5KP-01 16 69874080 69874080 T G WWP2 Missense_Mutation p.V131G 0.22 tolerated(0.19) benign(0) TCGA-OR-A5KP-01 17 42225398 42225398 A G C17orf53 Missense_Mutation p.D76G 0.10 tolerated(0.06) benign(0.02) TCGA-OR-A5KP-01 17 48741342 48741342 C T ABCC3 Missense_Mutation p.A403V 0.33 tolerated(0.1) benign(0.015) TCGA-OR-A5KP-01 17 58151224 58151224 C T HEATR6 Silent p.L117L 0.41 TCGA-OR-A5KP-01 19 14520224 14520224 C T DDX39A Missense_Mutation p.R337Q 0.24 tolerated(0.08) benign(0.003) TCGA-OR-A5KP-01 19 30199201 30199201 G A C19orf12 Silent p.F51F 0.18 TCGA-OR-A5KP-01 19 3525978 3525978 T G FZR1 Missense_Mutation p.F61C 0.18 deleterious(0) probably_damaging(0.954) TCGA-OR-A5KP-01 19 50363647 50363647 T G PTOV1 3'UTR 0.25 TCGA-OR-A5KP-01 19 52132321 52132321 G A SIGLEC5 Nonsense_Mutation p.Q237* 0.12 TCGA-OR-A5KP-01 1 100483292 100483292 A G SLC35A3 Missense_Mutation p.K270E 0.25 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KP-01 1 109235422 109235425 CTTA - PRPF38B Frame_Shift_Del p.Y71Sfs*67 0.40 TCGA-OR-A5KP-01 1 119923282 119923282 C G HAO2 Intron 0.16 TCGA-OR-A5KP-01 1 145076033 145076033 T C PDE4DIP 5'UTR 0.13 TCGA-OR-A5KP-01 1 150232559 150232559 G T CA14 Silent p.T23T 0.18 TCGA-OR-A5KP-01 1 155227427 155227429 AGG - SCAMP3 In_Frame_Del p.L180del 0.20 TCGA-OR-A5KP-01 1 16580181 16580181 G - FBXO42 Frame_Shift_Del p.K272Sfs*20 0.23 TCGA-OR-A5KP-01 1 201338962 201338962 A T TNNT2 Intron 0.15 TCGA-OR-A5KP-01 1 226032262 226032264 CTC - EPHX1 In_Frame_Del p.S370del 0.12 TCGA-OR-A5KP-01 1 237580422 237580422 G A RYR2 Missense_Mutation p.A283T 0.10 benign(0.197) TCGA-OR-A5KP-01 1 29064044 29064044 C T YTHDF2 Intron 0.15 TCGA-OR-A5KP-01 1 92446707 92446707 T A BRDT Nonsense_Mutation p.C574* 0.26 TCGA-OR-A5KP-01 20 34300947 34300947 C A RBM39 Missense_Mutation p.V390L 0.36 tolerated(0.76) benign(0.001) TCGA-OR-A5KP-01 20 35422018 35422020 GTT - SOGA1 In_Frame_Del p.N1489del 0.21 TCGA-OR-A5KP-01 20 3652895 3652895 A G ADAM33 Missense_Mutation p.C495R 0.24 deleterious(0) probably_damaging(1) TCGA-OR-A5KP-01 20 3652900 3652900 G C ADAM33 Missense_Mutation p.S493C 0.23 deleterious(0) possibly_damaging(0.704) TCGA-OR-A5KP-01 20 36760743 36760743 C T TGM2 Missense_Mutation p.R592Q 0.08 tolerated(0.1) benign(0.054) TCGA-OR-A5KP-01 20 56188152 56188152 C A ZBP1 Intron 0.21 TCGA-OR-A5KP-01 22 18018826 18018826 T C CECR2 Intron 0.17 TCGA-OR-A5KP-01 22 21800327 21800327 G A HIC2 Silent p.G381G 0.26 TCGA-OR-A5KP-01 22 24487724 24487724 A G CABIN1 Missense_Mutation p.H1238R 0.19 deleterious(0.02) benign(0.021) TCGA-OR-A5KP-01 22 26707835 26707835 G A SEZ6L Missense_Mutation p.D595N 0.28 tolerated(0.13) possibly_damaging(0.495) TCGA-OR-A5KP-01 2 144381828 144381828 A G ARHGAP15 Missense_Mutation p.E377G 0.10 deleterious(0.03) possibly_damaging(0.729) TCGA-OR-A5KP-01 2 31628802 31628802 G A XDH Missense_Mutation p.T24I 0.15 tolerated(0.42) benign(0.035) TCGA-OR-A5KP-01 2 36706642 36706642 C A CRIM1 Missense_Mutation p.P393T 0.15 tolerated(0.23) probably_damaging(0.991) TCGA-OR-A5KP-01 2 55566683 55566683 G C CCDC88A Missense_Mutation p.L479V 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KP-01 3 52554031 52554031 C T STAB1 Silent p.A1769A 0.18 TCGA-OR-A5KP-01 3 9754512 9754512 C T CPNE9 Missense_Mutation p.T182M 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-OR-A5KP-01 3 9991595 9991596 TG - PRRT3 Frame_Shift_Del p.D68Efs*6 0.12 TCGA-OR-A5KP-01 4 100131302 100131302 C T ADH6 Silent p.E168E 0.19 TCGA-OR-A5KP-01 4 103180638 103180638 G C SLC39A8 3'Flank 0.27 TCGA-OR-A5KP-01 4 30726021 30726021 G A PCDH7 Missense_Mutation p.A993T 0.09 deleterious(0) probably_damaging(0.98) TCGA-OR-A5KP-01 4 36345151 36345151 G A DTHD1 Nonsense_Mutation p.W684* 0.24 TCGA-OR-A5KP-01 4 57889711 57889711 C A POLR2B Missense_Mutation p.L911I 0.15 tolerated(0.11) benign(0.012) TCGA-OR-A5KP-01 5 128977578 128977578 C G ADAMTS19 Missense_Mutation p.C593W 0.24 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KP-01 5 13792259 13792259 T C DNAH5 Silent p.T2764T 0.07 TCGA-OR-A5KP-01 5 178360038 178360038 C A ZFP2 3'UTR 0.15 TCGA-OR-A5KP-01 5 34823555 34823555 G A RAI14 Silent p.K539K 0.14 TCGA-OR-A5KP-01 6 155503406 155503406 G T TIAM2 Silent p.R918R 0.23 TCGA-OR-A5KP-01 6 26017333 26017333 C T HIST1H1A Missense_Mutation p.A210T 0.15 tolerated(0.22) unknown(0) TCGA-OR-A5KP-01 6 28227192 28227192 G A NKAPL Missense_Mutation p.G15S 0.24 tolerated(0.2) unknown(0) TCGA-OR-A5KP-01 6 41034919 41034919 C G OARD1 3'UTR 0.33 TCGA-OR-A5KP-01 7 143087844 143087844 C T ZYX 3'UTR 0.28 TCGA-OR-A5KP-01 7 151843708 151843709 AG - KMT2C Frame_Shift_Del p.S4669Cfs*13 0.14 TCGA-OR-A5KP-01 7 23313809 23313809 T C GPNMB Missense_Mutation p.L562P 0.26 deleterious(0) probably_damaging(1) TCGA-OR-A5KP-01 7 87529633 87529633 A - DBF4 Frame_Shift_Del p.S260Vfs*10 0.10 TCGA-OR-A5KP-01 8 128428589 128428589 C T POU5F1B Silent p.L160L 0.09 TCGA-OR-A5KP-01 8 42317494 42317494 T C SLC20A2 Missense_Mutation p.N178S 0.25 tolerated(0.07) possibly_damaging(0.757) TCGA-OR-A5KP-01 9 116135916 116135916 G A HDHD3 Missense_Mutation p.A240V 0.26 tolerated(0.81) benign(0.031) TCGA-OR-A5KP-01 X 100400095 100400095 G A CENPI Silent p.L536L 0.25 TCGA-OR-A5KP-01 X 100542523 100542523 T G TAF7L Missense_Mutation p.E89D 0.18 deleterious(0.01) benign(0.013) TCGA-OR-A5KP-01 X 105142618 105142618 A G NRK Missense_Mutation p.R208G 0.21 deleterious(0) probably_damaging(0.936) TCGA-OR-A5KP-01 X 134994108 134994108 G A SAGE1 Silent p.G839G 0.08 TCGA-OR-A5KP-01 X 23803894 23803894 C T SAT1 Missense_Mutation p.S146F 0.20 tolerated(0.34) benign(0.22) TCGA-OR-A5KP-01 X 74649034 74649034 C G ZDHHC15 Splice_Site p.X161_splice 0.16 TCGA-OR-A5KQ-01 12 10584764 10584764 C T KLRC2 Silent p.V175V 0.14 TCGA-OR-A5KQ-01 12 8329841 8329841 C T ZNF705A Missense_Mutation p.R189W 0.39 deleterious(0.03) benign(0.001) TCGA-OR-A5KQ-01 15 32921898 32921898 A G ARHGAP11A Missense_Mutation p.K347R 0.17 tolerated(0.21) benign(0.049) TCGA-OR-A5KQ-01 17 29622398 29622398 G C OMG Missense_Mutation p.L318V 0.13 tolerated(0.18) benign(0.002) TCGA-OR-A5KQ-01 1 160105320 160105320 G A ATP1A2 Missense_Mutation p.V738I 0.14 deleterious(0.01) benign(0.095) TCGA-OR-A5KQ-01 1 232619550 232619550 G A SIPA1L2 Silent p.L657L 0.05 TCGA-OR-A5KQ-01 20 4893560 4893560 G A SLC23A2 Missense_Mutation p.A58V 0.05 tolerated(0.08) possibly_damaging(0.454) TCGA-OR-A5KQ-01 2 233347170 233347170 G A ECEL1 Missense_Mutation p.A585V 0.12 deleterious(0) probably_damaging(0.982) TCGA-OR-A5KQ-01 4 20525746 20525746 C T SLIT2 Missense_Mutation p.R462C 0.05 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KQ-01 6 151293139 151293139 T C MTHFD1L Silent p.S690S 0.10 TCGA-OR-A5KQ-01 7 107408290 107408290 A C SLC26A3 Missense_Mutation p.F709C 0.22 deleterious(0.04) probably_damaging(0.98) TCGA-OR-A5KQ-01 X 153295874 153295874 G A MECP2 Missense_Mutation p.P481S 0.23 tolerated(0.09) unknown(0) TCGA-OR-A5KQ-01 X 48921925 48921925 C T CCDC120 Missense_Mutation p.R117C 0.22 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KS-01 11 56310261 56310261 T C OR5M11 Missense_Mutation p.Q158R 0.30 deleterious(0) probably_damaging(0.955) TCGA-OR-A5KS-01 12 128900026 128900026 G A TMEM132C Missense_Mutation p.D279N 0.23 tolerated(0.25) benign(0.015) TCGA-OR-A5KS-01 12 15262053 15262053 G A RERG Silent p.I197I 0.16 TCGA-OR-A5KS-01 12 54686624 54686624 C T NFE2 Missense_Mutation p.R219Q 0.26 deleterious(0.02) probably_damaging(0.944) TCGA-OR-A5KS-01 16 71718478 71718478 G T PHLPP2 Nonsense_Mutation p.Y212* 0.11 TCGA-OR-A5KS-01 18 44260305 44260305 G A ST8SIA5 Silent p.F277F 0.40 TCGA-OR-A5KS-01 18 66721363 66721363 C T CCDC102B Nonsense_Mutation p.Q511* 0.36 TCGA-OR-A5KS-01 19 1395488 1395490 CGC - NDUFS7 3'UTR 0.43 TCGA-OR-A5KS-01 19 16338981 16338981 G A AP1M1 Missense_Mutation p.E296K 0.20 tolerated(0.1) possibly_damaging(0.901) TCGA-OR-A5KS-01 1 181727162 181727162 G A CACNA1E Missense_Mutation p.R1470H 0.83 deleterious(0) possibly_damaging(0.522) TCGA-OR-A5KS-01 1 28240630 28240630 T G RPA2 Missense_Mutation p.T21P 0.05 tolerated(0.05) benign(0.425) TCGA-OR-A5KS-01 1 44684101 44684101 T G DMAP1 Missense_Mutation p.F171C 0.90 deleterious(0) probably_damaging(0.987) TCGA-OR-A5KS-01 1 84991783 84991783 G - SPATA1 Intron 0.44 TCGA-OR-A5KS-01 1 89586906 89586912 TCCAGAT - GBP2 Frame_Shift_Del p.I78Cfs*14 0.18 TCGA-OR-A5KS-01 2 201726549 201726549 C T CLK1 Missense_Mutation p.D55N 0.36 tolerated_low_confidence(0.06) benign(0.011) TCGA-OR-A5KS-01 3 30713517 30713517 A G TGFBR2 Missense_Mutation p.Y306C 0.57 tolerated(0.21) benign(0.056) TCGA-OR-A5KS-01 3 3131860 3131860 C G IL5RA Intron 0.76 TCGA-OR-A5KS-01 4 185339341 185339341 C T IRF2 Missense_Mutation p.D131N 0.27 tolerated(0.49) benign(0.273) TCGA-OR-A5KS-01 4 88379078 88379078 C G NUDT9 Missense_Mutation p.L320V 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5KS-01 5 150227588 150227588 C G IRGM 5'UTR 0.47 TCGA-OR-A5KS-01 5 156899408 156899408 T C NIPAL4 Missense_Mutation p.Y281H 0.45 tolerated(0.26) probably_damaging(0.992) TCGA-OR-A5KS-01 5 194841 194841 G A LRRC14B Silent p.L306L 0.30 TCGA-OR-A5KS-01 6 138726347 138726347 G A HEBP2 Missense_Mutation p.M56I 0.37 tolerated(0.24) benign(0.023) TCGA-OR-A5KS-01 6 82461728 82461742 CCGCCGAAGTCGCCG - FAM46A In_Frame_Del p.D41_G45del 0.28 TCGA-OR-A5KS-01 7 102389629 102389633 CTGAG - FAM185A 5'Flank 0.32 TCGA-OR-A5KS-01 8 133144473 133144473 A T KCNQ3 Missense_Mutation p.I613N 0.43 tolerated(0.07) benign(0.073) TCGA-OR-A5KT-01 11 88386562 88386562 C G GRM5 Missense_Mutation p.W307C 0.36 deleterious(0) probably_damaging(1) TCGA-OR-A5KT-01 12 5023451 5023451 G A KCNA1 3'UTR 0.10 TCGA-OR-A5KT-01 12 83290354 83290354 C G TMTC2 Missense_Mutation p.A471G 0.05 deleterious(0) benign(0.125) TCGA-OR-A5KT-01 14 81209499 81209499 T C CEP128 Missense_Mutation p.K909R 0.28 tolerated(0.36) possibly_damaging(0.471) TCGA-OR-A5KT-01 16 50069427 50069427 G A CNEP1R1 3'UTR 0.23 TCGA-OR-A5KT-01 17 40666399 40666399 G A ATP6V0A1 Missense_Mutation p.A782T 0.27 tolerated(0.16) benign(0.007) TCGA-OR-A5KT-01 17 47117325 47117325 C A IGF2BP1 Missense_Mutation p.D230E 0.07 deleterious(0) probably_damaging(0.917) TCGA-OR-A5KT-01 19 14088836 14088836 C G RFX1 Missense_Mutation p.E299D 0.37 tolerated(0.1) benign(0.256) TCGA-OR-A5KT-01 19 17322817 17322818 - C MYO9B 3'UTR 0.19 TCGA-OR-A5KT-01 19 54172454 54172454 G T MIR512-2 RNA 0.19 TCGA-OR-A5KT-01 1 145475513 145475513 A G ANKRD34A 3'UTR 0.28 TCGA-OR-A5KT-01 1 152056731 152056731 A G TCHHL1 3'UTR 0.06 TCGA-OR-A5KT-01 1 3732858 3732858 G A CEP104 Missense_Mutation p.P883L 0.25 tolerated(0.74) benign(0.001) TCGA-OR-A5KT-01 1 39898819 39898820 - T MACF1 Frame_Shift_Ins p.L3792Ifs*13 0.22 TCGA-OR-A5KT-01 1 93575975 93575975 C G MTF2 Missense_Mutation p.T65S 0.03 tolerated(0.15) possibly_damaging(0.599) TCGA-OR-A5KT-01 22 19511427 19511427 C G CLDN5 Missense_Mutation p.A203P 0.36 tolerated(0.05) probably_damaging(0.961) TCGA-OR-A5KT-01 22 23248651 23248651 C - IGLC3 Frame_Shift_Del p.V49Sfs*24 0.33 TCGA-OR-A5KT-01 22 38042891 38042891 C T SH3BP1 Missense_Mutation p.P331S 0.10 tolerated(0.69) benign(0.241) TCGA-OR-A5KT-01 2 166898935 166898935 C A SCN1A Splice_Site p.X682_splice 0.05 TCGA-OR-A5KT-01 2 234858625 234858625 T C TRPM8 Silent p.P325P 0.09 TCGA-OR-A5KT-01 2 27560194 27560194 G C GTF3C2 Nonsense_Mutation p.Y348* 0.31 TCGA-OR-A5KT-01 2 30829013 30829013 G T LCLAT1 Intron 0.30 TCGA-OR-A5KT-01 3 11072862 11072862 G T SLC6A1 Splice_Site p.X442_splice 0.42 TCGA-OR-A5KT-01 3 156395550 156395550 G A TIPARP Missense_Mutation p.D22N 0.08 deleterious_low_confidence(0.04) benign(0.046) TCGA-OR-A5KT-01 3 49757056 49757056 C T AMIGO3 5'UTR 0.32 TCGA-OR-A5KT-01 3 64133073 64133073 G A PRICKLE2 Silent p.L365L 0.28 TCGA-OR-A5KT-01 4 113352982 113352982 G - ALPK1 Frame_Shift_Del p.R760Sfs*41 0.25 TCGA-OR-A5KT-01 4 2515578 2515581 GACA - RNF4 3'UTR 0.17 TCGA-OR-A5KT-01 4 70812054 70812054 C T CSN1S1 3'UTR 0.09 TCGA-OR-A5KT-01 5 169482342 169482342 A T DOCK2 Missense_Mutation p.D1416V 0.07 deleterious(0.02) benign(0.016) TCGA-OR-A5KT-01 6 31935101 31935101 G A SKIV2L Missense_Mutation p.V844M 0.05 deleterious(0) probably_damaging(0.985) TCGA-OR-A5KT-01 6 56482929 56482929 A T DST Intron 0.07 TCGA-OR-A5KT-01 6 74228257 74228257 G A EEF1A1 Silent p.V283V 0.03 TCGA-OR-A5KT-01 6 76633419 76633419 G C IMPG1 Missense_Mutation p.P750A 0.33 deleterious(0.03) benign(0.214) TCGA-OR-A5KT-01 7 138872237 138872237 G C TTC26 Missense_Mutation p.G502A 0.31 deleterious(0.02) probably_damaging(0.936) TCGA-OR-A5KT-01 7 91974336 91974336 G A ANKIB1 Silent p.V347V 0.30 TCGA-OR-A5KT-01 8 120428699 120428699 G C NOV 5'UTR 0.28 TCGA-OR-A5KT-01 8 131172197 131172197 C T ASAP1 Missense_Mutation p.R308Q 0.05 deleterious(0.04) benign(0.027) TCGA-OR-A5KT-01 8 15967636 15967636 G C MSR1 Silent p.A438A 0.31 TCGA-OR-A5KT-01 X 138886677 138886677 T C ATP11C Missense_Mutation p.T173A 0.03 tolerated(0.08) possibly_damaging(0.644) TCGA-OR-A5KT-01 X 155006570 155006570 G T SPRY3 3'UTR 0.10 TCGA-OR-A5KT-01 X 76939322 76939322 G A ATRX Nonsense_Mutation p.Q476* 0.28 TCGA-OR-A5KU-01 11 14490270 14490270 T C COPB1 Missense_Mutation p.Q701R 0.06 tolerated(0.46) benign(0.001) TCGA-OR-A5KU-01 11 63276354 63276354 A G LGALS12 Missense_Mutation p.N111S 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-OR-A5KU-01 11 93088643 93088643 C T CCDC67 Nonsense_Mutation p.R46* 0.70 TCGA-OR-A5KU-01 12 14927895 14927895 G A H2AFJ 3'UTR 0.16 TCGA-OR-A5KU-01 12 8759524 8759524 G A AICDA Silent p.Y31Y 0.50 TCGA-OR-A5KU-01 15 49611899 49611899 A G GALK2 Missense_Mutation p.M356V 0.48 tolerated(0.3) benign(0) TCGA-OR-A5KU-01 15 59102553 59102553 T C FAM63B Missense_Mutation p.I363T 0.23 deleterious(0) probably_damaging(0.992) TCGA-OR-A5KU-01 16 2903974 2903974 G A PRSS22 Silent p.I203I 0.17 TCGA-OR-A5KU-01 16 30492905 30492905 C T ITGAL Missense_Mutation p.A241V 0.16 tolerated(0.85) benign(0.003) TCGA-OR-A5KU-01 16 3454512 3454512 G A ZNF174 Silent p.P163P 0.17 TCGA-OR-A5KU-01 17 17250223 17250223 G T NT5M Missense_Mutation p.D217Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-OR-A5KU-01 18 56035075 56035075 G A NEDD4L Missense_Mutation p.V721I 0.12 tolerated(0.12) probably_damaging(0.996) TCGA-OR-A5KU-01 19 16222725 16222725 A G RAB8A Missense_Mutation p.Y5C 0.36 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KU-01 19 3778527 3778527 G A MATK Missense_Mutation p.R423W 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5KU-01 20 4707793 4707793 A G PRND 3'UTR 0.47 TCGA-OR-A5KU-01 21 46021002 46021002 T C KRTAP10-7 Missense_Mutation p.C161R 0.07 deleterious(0.02) unknown(0) TCGA-OR-A5KU-01 2 233527635 233527635 C T EFHD1 Silent p.F142F 0.79 TCGA-OR-A5KU-01 2 234354288 234354288 C T DGKD Missense_Mutation p.P405L 0.62 deleterious(0) probably_damaging(0.947) TCGA-OR-A5KU-01 3 111632246 111632246 C T PHLDB2 Silent p.T472T 0.32 TCGA-OR-A5KU-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.37 deleterious(0) possibly_damaging(0.844) TCGA-OR-A5KU-01 3 4715944 4715944 G C ITPR1 Missense_Mutation p.E824Q 0.40 tolerated(0.23) benign(0.207) TCGA-OR-A5KU-01 3 49898695 49898695 C T CAMKV Silent p.S160S 0.28 TCGA-OR-A5KU-01 4 8293291 8293291 C T HTRA3 Silent p.N301N 0.38 TCGA-OR-A5KU-01 5 146773444 146773444 C T DPYSL3 3'UTR 0.41 TCGA-OR-A5KU-01 5 38435283 38435283 C T EGFLAM Silent p.G737G 0.07 TCGA-OR-A5KU-01 6 56366479 56366479 C G DST Missense_Mutation p.E3904Q 0.64 probably_damaging(0.979) TCGA-OR-A5KU-01 7 123599735 123599735 G A SPAM1 Silent p.K414K 0.15 TCGA-OR-A5KU-01 X 102003966 102003967 - A BHLHB9 Frame_Shift_Ins p.A18Gfs*6 0.21 TCGA-OR-A5KU-01 X 128721082 128721082 A G OCRL Missense_Mutation p.Y748C 0.20 tolerated(0.06) benign(0.003) TCGA-OR-A5KU-01 X 150912699 150912699 G A CNGA2 Missense_Mutation p.R575Q 0.26 tolerated(0.09) benign(0.019) TCGA-OR-A5KU-01 X 49093667 49093667 T A CCDC22 Silent p.P55P 0.29 TCGA-OR-A5KV-01 10 27040664 27040664 G A ABI1 Missense_Mutation p.P405L 0.42 tolerated(0.3) benign(0.027) TCGA-OR-A5KV-01 11 121429444 121429444 G A SORL1 Silent p.T936T 0.44 TCGA-OR-A5KV-01 12 22635541 22635541 C T C2CD5 Missense_Mutation p.G563R 0.35 deleterious(0) probably_damaging(0.969) TCGA-OR-A5KV-01 12 47630202 47630202 C A PCED1B 3'UTR 0.04 TCGA-OR-A5KV-01 15 53998158 53998158 A T WDR72 Missense_Mutation p.D356E 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-OR-A5KV-01 15 72543246 72543246 G A PARP6 Missense_Mutation p.P453L 0.44 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KV-01 15 74740854 74740854 G A UBL7 Missense_Mutation p.H324Y 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-OR-A5KV-01 17 3979896 3979896 G A ZZEF1 Intron 0.43 TCGA-OR-A5KV-01 19 1488279 1488279 C A PCSK4 Missense_Mutation p.V99L 0.35 deleterious(0) benign(0.291) TCGA-OR-A5KV-01 19 36228534 36228534 C G KMT2B Intron 0.50 TCGA-OR-A5KV-01 1 214816610 214816610 C G CENPF Silent p.L1643L 0.50 TCGA-OR-A5KV-01 1 235324580 235324580 G A RBM34 5'UTR 0.57 TCGA-OR-A5KV-01 1 237811822 237811822 G - RYR2 Frame_Shift_Del p.V2475Sfs*28 0.30 TCGA-OR-A5KV-01 1 52878204 52878204 G A PRPF38A Missense_Mutation p.E173K 0.07 deleterious(0.03) probably_damaging(0.909) TCGA-OR-A5KV-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.47 deleterious(0.01) probably_damaging(1) TCGA-OR-A5KV-01 2 14776013 14776014 AT - FAM84A 3'UTR 0.27 TCGA-OR-A5KV-01 3 391155 391155 A T CHL1 Missense_Mutation p.K321I 0.44 tolerated(0.1) possibly_damaging(0.599) TCGA-OR-A5KV-01 4 76912005 76912005 G A SDAD1 5'UTR 0.47 TCGA-OR-A5KV-01 5 112458382 112458382 C T MCC Missense_Mutation p.M342I 0.45 tolerated(0.66) benign(0.001) TCGA-OR-A5KV-01 5 179247929 179247929 C T SQSTM1 5'UTR 0.51 TCGA-OR-A5KV-01 5 37196023 37196023 C T C5orf42 Missense_Mutation p.A1250T 0.05 tolerated(0.05) benign(0.014) TCGA-OR-A5KV-01 5 68670480 68670480 A T RAD17 Missense_Mutation p.K109I 0.33 deleterious(0) probably_damaging(1) TCGA-OR-A5KV-01 5 73165981 73165981 C A ARHGEF28 Nonsense_Mutation p.S838* 0.04 TCGA-OR-A5KV-01 6 132014711 132014711 C T ENPP3 Silent p.N453N 0.41 TCGA-OR-A5KV-01 8 49985442 49985442 G A C8orf22 Missense_Mutation p.R18Q 0.04 deleterious(0.05) benign(0.124) TCGA-OR-A5KV-01 9 113196694 113196694 C G SVEP1 Missense_Mutation p.G1661R 0.34 probably_damaging(1) TCGA-OR-A5KV-01 X 48214670 48214670 G T SSX3 Missense_Mutation p.D5E 0.14 tolerated(0.07) benign(0.009) TCGA-OR-A5KV-01 X 49067892 49067892 C T CACNA1F Missense_Mutation p.G1395R 0.13 tolerated(0.06) probably_damaging(0.935) TCGA-OR-A5KW-01 10 101594155 101594155 G A ABCC2 Missense_Mutation p.D1093N 0.04 tolerated(0.2) possibly_damaging(0.677) TCGA-OR-A5KW-01 10 81706389 81706389 C A SFTPD Silent p.L9L 0.04 TCGA-OR-A5KW-01 11 64573817 64573817 G C MEN1 Nonsense_Mutation p.Y317* 0.85 TCGA-OR-A5KW-01 13 50050649 50050649 A G SETDB2 Missense_Mutation p.K127E 0.38 tolerated(0.29) benign(0.011) TCGA-OR-A5KW-01 14 105622156 105622156 C A JAG2 Missense_Mutation p.D216Y 0.28 deleterious(0) probably_damaging(1) TCGA-OR-A5KW-01 14 106926601 106926601 T C IGHV3-43 Missense_Mutation p.K15R 0.82 tolerated_low_confidence(0.29) benign(0.005) TCGA-OR-A5KW-01 14 29237769 29237769 G A FOXG1 Silent p.S428S 0.13 TCGA-OR-A5KW-01 15 66850065 66850065 T C LCTL Missense_Mutation p.Y306C 0.06 tolerated(0.13) possibly_damaging(0.676) TCGA-OR-A5KW-01 15 69222864 69222864 G A SPESP1 5'UTR 0.06 TCGA-OR-A5KW-01 16 66600431 66600431 C T CMTM1 Silent p.H5H 0.49 TCGA-OR-A5KW-01 17 41063167 41063167 C T G6PC Silent p.G266G 0.05 TCGA-OR-A5KW-01 17 45916995 45916995 C T SCRN2 Missense_Mutation p.R124Q 0.90 deleterious(0) probably_damaging(1) TCGA-OR-A5KW-01 18 29102113 29102113 C G DSG2 Silent p.S197S 0.84 TCGA-OR-A5KW-01 19 15224797 15224797 C T SYDE1 3'UTR 0.44 TCGA-OR-A5KW-01 19 48525476 48525476 T C ELSPBP1 Silent p.Y188Y 0.07 TCGA-OR-A5KW-01 19 53058713 53058713 A G ZNF808 Silent p.K848K 0.37 TCGA-OR-A5KW-01 1 11008485 11008485 C A C1orf127 Silent p.G569G 0.84 TCGA-OR-A5KW-01 20 34618419 34618419 C T CNBD2 Missense_Mutation p.P523L 0.10 tolerated(0.14) benign(0.103) TCGA-OR-A5KW-01 20 57430628 57430628 C A GNAS Intron 0.70 TCGA-OR-A5KW-01 22 29837551 29837551 G C RFPL1 Missense_Mutation p.D132H 0.71 deleterious(0.04) possibly_damaging(0.536) TCGA-OR-A5KW-01 2 160994644 160994644 C T ITGB6 Missense_Mutation p.A392T 0.08 deleterious(0.04) benign(0.214) TCGA-OR-A5KW-01 2 225702542 225702542 C G DOCK10 Silent p.L929L 0.66 TCGA-OR-A5KW-01 3 180685937 180685937 C T FXR1 Nonsense_Mutation p.R433* 0.85 TCGA-OR-A5KW-01 3 49044142 49044142 C G P4HTM Missense_Mutation p.D498E 0.04 tolerated(1) benign(0.025) TCGA-OR-A5KW-01 3 50103899 50103899 T C RBM6 Silent p.V969V 0.08 TCGA-OR-A5KW-01 3 52819196 52819196 T C ITIH1 Missense_Mutation p.I515T 0.91 deleterious(0) benign(0.15) TCGA-OR-A5KW-01 5 73981246 73981246 C T HEXB Missense_Mutation p.P54L 0.44 tolerated(0.32) benign(0.008) TCGA-OR-A5KW-01 6 8041503 8041503 T A BLOC1S5 Splice_Site p.X66_splice 0.68 TCGA-OR-A5KW-01 7 128496863 128496863 C G FLNC Missense_Mutation p.N2483K 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5KW-01 7 142651025 142651025 C A KEL Missense_Mutation p.D315Y 0.44 deleterious(0) probably_damaging(0.995) TCGA-OR-A5KW-01 7 29726997 29726997 G T DPY19L2P3 RNA 0.29 TCGA-OR-A5KW-01 7 53103984 53103984 G A POM121L12 Missense_Mutation p.R207K 0.45 tolerated(0.15) possibly_damaging(0.567) TCGA-OR-A5KW-01 7 73011760 73011760 G T MLXIPL Missense_Mutation p.P452H 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5KW-01 8 81399960 81399962 CCT - ZBTB10 In_Frame_Del p.L308del 0.59 TCGA-OR-A5KW-01 X 151900366 151900366 G A MAGEA12 Silent p.D145D 0.08 TCGA-OR-A5KW-01 X 47230123 47230123 C A ZNF157 Missense_Mutation p.P19H 0.48 tolerated(0.13) benign(0.21) TCGA-OR-A5KX-01 10 112559623 112559623 G A RBM20 Missense_Mutation p.G583S 0.31 tolerated(0.07) possibly_damaging(0.504) TCGA-OR-A5KX-01 11 100862986 100862986 G A TMEM133 5'UTR 0.06 TCGA-OR-A5KX-01 11 47869867 47869867 C T NUP160 Missense_Mutation p.A36T 0.08 deleterious_low_confidence(0.01) benign(0.132) TCGA-OR-A5KX-01 11 64056752 64056777 CCCAGGATCCTGGGGGTCGTGGCTAC - GPR137 Frame_Shift_Del p.Q449Pfs*12 0.36 TCGA-OR-A5KX-01 11 70052536 70052536 C T FADD Missense_Mutation p.P195L 0.49 tolerated(0.49) benign(0.003) TCGA-OR-A5KX-01 12 52882329 52882329 C T KRT6A Missense_Mutation p.A403T 0.55 tolerated(0.11) benign(0.216) TCGA-OR-A5KX-01 12 6672532 6672532 G A NOP2 Silent p.S312S 0.52 TCGA-OR-A5KX-01 13 111287256 111287256 C G CARKD Intron 0.32 TCGA-OR-A5KX-01 13 33017802 33017802 G C N4BP2L2 Missense_Mutation p.S291C 0.04 deleterious(0.01) probably_damaging(0.948) TCGA-OR-A5KX-01 14 105407448 105407448 T C AHNAK2 Silent p.E4780E 0.33 TCGA-OR-A5KX-01 14 50824782 50824782 C T CDKL1 Intron 0.23 TCGA-OR-A5KX-01 14 52520649 52520649 G A NID2 Silent p.S359S 0.37 TCGA-OR-A5KX-01 14 76232414 76232414 A C TTLL5 Missense_Mutation p.Q573P 0.45 tolerated(0.07) benign(0.206) TCGA-OR-A5KX-01 14 81961479 81961479 A C SEL1L Silent p.V377V 0.20 TCGA-OR-A5KX-01 16 20810279 20810279 C T ERI2 Silent p.K281K 0.11 TCGA-OR-A5KX-01 17 10358566 10358566 C T MYH4 Missense_Mutation p.D741N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5KX-01 18 24127764 24127764 C T KCTD1 Intron 0.09 TCGA-OR-A5KX-01 18 7011370 7011370 C T LAMA1 Missense_Mutation p.A1206T 0.20 tolerated(0.41) benign(0.002) TCGA-OR-A5KX-01 18 70534687 70534687 C G NETO1 5'UTR 0.54 TCGA-OR-A5KX-01 19 14161650 14161650 G A IL27RA Missense_Mutation p.A495T 0.14 deleterious(0) probably_damaging(0.99) TCGA-OR-A5KX-01 19 15300189 15300189 C G NOTCH3 Missense_Mutation p.D363H 0.07 deleterious(0) probably_damaging(0.981) TCGA-OR-A5KX-01 19 35800808 35800808 C T MAG Silent p.C421C 0.74 TCGA-OR-A5KX-01 19 58384131 58384132 CT - ZNF814 3'UTR 0.20 TCGA-OR-A5KX-01 1 109772188 109772188 C T SARS Silent p.N147N 0.06 TCGA-OR-A5KX-01 1 155141958 155141958 G A RP11-201K10.3 Missense_Mutation p.S227L 0.68 unknown(0) TCGA-OR-A5KX-01 1 179816744 179816745 TG - TOR1AIP2 Frame_Shift_Del p.Q194Kfs*6 0.14 TCGA-OR-A5KX-01 1 228561682 228561682 C T OBSCN Silent p.F8408F 0.23 TCGA-OR-A5KX-01 1 245851927 245851927 C T KIF26B Missense_Mutation p.P1881L 0.86 deleterious(0) unknown(0) TCGA-OR-A5KX-01 1 32797321 32797321 G A HDAC1 Missense_Mutation p.G378E 0.61 deleterious(0.03) benign(0.049) TCGA-OR-A5KX-01 20 3181069 3181069 C T DDRGK1 Silent p.A109A 0.27 TCGA-OR-A5KX-01 20 50769031 50769031 G A ZFP64 Missense_Mutation p.P567L 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5KX-01 20 5939263 5939263 G A MCM8 Missense_Mutation p.R227H 0.61 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KX-01 2 223789243 223789243 C G ACSL3 Missense_Mutation p.L408V 0.21 deleterious(0.04) probably_damaging(0.966) TCGA-OR-A5KX-01 2 228195447 228195447 G A MFF Silent p.R48R 0.17 TCGA-OR-A5KX-01 3 110831005 110831005 A G PVRL3 Missense_Mutation p.K97E 0.03 deleterious(0.04) probably_damaging(0.925) TCGA-OR-A5KX-01 3 14154643 14154644 CC - CHCHD4 Frame_Shift_Del p.G71Nfs*11 0.31 TCGA-OR-A5KX-01 3 152554857 152554857 G T P2RY1 3'UTR 0.32 TCGA-OR-A5KX-01 3 160148531 160148531 G C SMC4 Missense_Mutation p.E980D 0.04 tolerated(0.06) benign(0.082) TCGA-OR-A5KX-01 4 135122388 135122388 C G PABPC4L 5'UTR 0.42 TCGA-OR-A5KX-01 4 183676036 183676036 A T TENM3 Missense_Mutation p.N1506Y 0.34 deleterious(0.02) benign(0.099) TCGA-OR-A5KX-01 5 127728908 127728908 G T FBN2 Missense_Mutation p.P462H 0.51 tolerated(0.1) possibly_damaging(0.712) TCGA-OR-A5KX-01 5 159491977 159491977 T G TTC1 Missense_Mutation p.F262V 0.60 deleterious(0) probably_damaging(0.925) TCGA-OR-A5KX-01 5 33944896 33944896 G A SLC45A2 Nonsense_Mutation p.Q484* 0.07 TCGA-OR-A5KX-01 5 81613911 81613911 C T ATP6AP1L Missense_Mutation p.S156F 0.43 deleterious(0) probably_damaging(0.971) TCGA-OR-A5KX-01 7 73636002 73636002 G A LAT2 Missense_Mutation p.R123Q 0.18 tolerated(0.38) benign(0.002) TCGA-OR-A5KX-01 7 81591223 81591224 CA - CACNA2D1 Frame_Shift_Del p.C984Wfs*23 0.21 TCGA-OR-A5KX-01 8 120581567 120581567 C T ENPP2 Missense_Mutation p.R706Q 0.08 deleterious(0.03) benign(0.397) TCGA-OR-A5KX-01 8 37702542 37702542 C T BRF2 Silent p.R242R 0.07 TCGA-OR-A5KX-01 8 39843065 39843065 G A IDO2 Intron 0.60 TCGA-OR-A5KX-01 9 101894969 101894969 T A TGFBR1 Silent p.G174G 0.38 TCGA-OR-A5KX-01 9 35375173 35375173 G A UNC13B Missense_Mutation p.R448H 0.43 deleterious(0) possibly_damaging(0.715) TCGA-OR-A5KX-01 9 8733899 8733899 G A PTPRD 5'UTR 0.20 TCGA-OR-A5KX-01 X 108635183 108635183 T A GUCY2F Missense_Mutation p.Y913F 0.05 deleterious(0) probably_damaging(0.948) TCGA-OR-A5KX-01 X 131216403 131216403 C G FRMD7 Missense_Mutation p.S298T 0.04 deleterious(0.01) probably_damaging(0.994) TCGA-OR-A5KX-01 X 134125311 134125311 G C SMIM10 Missense_Mutation p.K62N 0.03 deleterious(0.02) benign(0.005) TCGA-OR-A5KX-01 X 151128149 151128149 C G GABRE Intron 0.28 TCGA-OR-A5KX-01 X 151128169 151128169 G T GABRE Intron 0.25 TCGA-OR-A5KX-01 X 57146333 57146333 C G SPIN2B Missense_Mutation p.D244H 0.30 tolerated(0.07) probably_damaging(0.953) TCGA-OR-A5KX-01 X 57619015 57619015 G A ZXDB Silent p.L178L 0.41 TCGA-OR-A5KX-01 X 65423292 65423292 C T HEPH Nonsense_Mutation p.Q776* 0.05 TCGA-OR-A5KY-01 10 81904035 81904035 G C PLAC9 Silent p.L73L 0.41 TCGA-OR-A5KY-01 11 64572613 64572613 G A MEN1 Nonsense_Mutation p.R420* 0.71 TCGA-OR-A5KY-01 13 112722101 112722101 C A SOX1 Silent p.G43G 0.78 TCGA-OR-A5KY-01 13 46542982 46542982 T A ZC3H13 Nonsense_Mutation p.R1233* 0.32 TCGA-OR-A5KY-01 14 38679311 38679311 C A SSTR1 Silent p.I239I 0.30 TCGA-OR-A5KY-01 15 41501767 41501767 G T EXD1 Missense_Mutation p.Q98K 0.68 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KY-01 15 88678334 88678334 G T NTRK3 Missense_Mutation p.P401Q 0.39 tolerated(0.44) benign(0.096) TCGA-OR-A5KY-01 16 22545790 22545790 G A NPIPB5 Missense_Mutation p.A496T 0.11 tolerated_low_confidence(0.4) probably_damaging(0.95) TCGA-OR-A5KY-01 16 53860242 53860242 C T FTO Missense_Mutation p.A197V 0.32 tolerated(0.29) benign(0.328) TCGA-OR-A5KY-01 17 72368576 72368576 C G GPR142 Missense_Mutation p.A409G 0.26 tolerated(0.1) benign(0.187) TCGA-OR-A5KY-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.71 deleterious(0) probably_damaging(1) TCGA-OR-A5KY-01 18 70417313 70417313 C T NETO1 Missense_Mutation p.D509N 0.34 deleterious_low_confidence(0.04) benign(0.107) TCGA-OR-A5KY-01 19 2853644 2853644 G C ZNF555 Silent p.V527V 0.25 TCGA-OR-A5KY-01 19 38905653 38905653 G C RASGRP4 Silent p.L355L 0.06 TCGA-OR-A5KY-01 19 48965218 48965218 C G KCNJ14 Silent p.T79T 0.21 TCGA-OR-A5KY-01 19 9058325 9058325 G T MUC16 Missense_Mutation p.S9707R 0.22 unknown(0) TCGA-OR-A5KY-01 1 157494069 157494069 C A FCRL5 Missense_Mutation p.V747F 0.35 deleterious(0) possibly_damaging(0.762) TCGA-OR-A5KY-01 1 158224992 158224992 C A CD1A Missense_Mutation p.S59R 0.68 tolerated(0.08) benign(0.002) TCGA-OR-A5KY-01 1 196227367 196227367 C T KCNT2 Silent p.V1056V 0.37 TCGA-OR-A5KY-01 1 33235634 33235634 G C KIAA1522 Missense_Mutation p.G285A 0.40 tolerated(0.91) unknown(0) TCGA-OR-A5KY-01 21 15011924 15011924 C T POTED Nonsense_Mutation p.Q500* 0.51 TCGA-OR-A5KY-01 22 29439356 29439372 CTGATGAACATCGTCAA - ZNRF3 Frame_Shift_Del p.L191Qfs*19 0.60 TCGA-OR-A5KY-01 2 215917310 215917310 T A ABCA12 Splice_Site p.X137_splice 0.05 TCGA-OR-A5KY-01 2 89999310 89999310 C A IGKV2D-28 Missense_Mutation p.P38T 0.64 tolerated(0.49) benign(0.005) TCGA-OR-A5KY-01 3 121289622 121289622 C T ARGFX Missense_Mutation p.S21F 0.37 tolerated(0.71) benign(0.001) TCGA-OR-A5KY-01 3 69246086 69246086 G T FRMD4B Missense_Mutation p.Q353K 0.30 deleterious(0) probably_damaging(0.994) TCGA-OR-A5KY-01 5 100152271 100152271 A C ST8SIA4 Intron 0.44 TCGA-OR-A5KY-01 5 1253890 1253890 C A TERT Missense_Mutation p.A1118S 0.08 deleterious(0) possibly_damaging(0.727) TCGA-OR-A5KY-01 5 153372546 153372546 A G FAM114A2 Missense_Mutation p.L503S 0.46 tolerated_low_confidence(0.79) benign(0) TCGA-OR-A5KY-01 5 161113302 161113302 C A GABRA6 Silent p.I35I 0.20 TCGA-OR-A5KY-01 5 161113303 161113303 C A GABRA6 Missense_Mutation p.L36M 0.20 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KY-01 5 178359735 178359735 C G ZFP2 3'UTR 0.42 TCGA-OR-A5KY-01 5 68599726 68599726 C G CCDC125 Missense_Mutation p.E216D 0.27 tolerated(0.09) probably_damaging(0.971) TCGA-OR-A5KY-01 6 27101075 27101075 G C HIST1H2AG Missense_Mutation p.K75N 0.69 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-OR-A5KY-01 6 31842716 31842716 G C SLC44A4 Missense_Mutation p.P111R 0.36 deleterious(0) probably_damaging(0.946) TCGA-OR-A5KY-01 7 123516971 123516971 C A HYAL4 Missense_Mutation p.A403E 0.25 tolerated(0.99) benign(0.003) TCGA-OR-A5KY-01 7 21778372 21778372 G T DNAH11 Nonsense_Mutation p.G2574* 0.31 TCGA-OR-A5KY-01 7 98988567 98988567 G A ARPC1B Silent p.P184P 0.27 TCGA-OR-A5KY-01 9 105757659 105757659 G T CYLC2 5'UTR 0.05 TCGA-OR-A5KZ-01 10 43698838 43698838 A T RASGEF1A Missense_Mutation p.S77T 0.13 deleterious(0.04) benign(0.297) TCGA-OR-A5KZ-01 11 4159666 4159666 G T RRM1 3'UTR 0.07 TCGA-OR-A5KZ-01 14 59798591 59798591 G T DAAM1 Missense_Mutation p.D641Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-OR-A5KZ-01 14 94752476 94752476 G T SERPINA10 Nonsense_Mutation p.S371* 0.32 TCGA-OR-A5KZ-01 15 54914522 54914522 C A UNC13C Intron 0.44 TCGA-OR-A5KZ-01 16 1642210 1642210 C A IFT140 Nonsense_Mutation p.E201* 0.32 TCGA-OR-A5KZ-01 17 29554308 29554317 AGGTATGCCC - NF1 Splice_Site p.X775_splice 0.77 TCGA-OR-A5KZ-01 17 7578378 7578392 ATCTGAGCAGCGCTC - TP53 In_Frame_Del p.E180_D184del 0.84 TCGA-OR-A5KZ-01 18 43796373 43796373 G A C18orf25 Missense_Mutation p.S176N 0.92 probably_damaging(0.993) TCGA-OR-A5KZ-01 19 54185480 54185480 T C MIR520F RNA 0.62 TCGA-OR-A5KZ-01 19 56274284 56284288 19:56274284-56284288 - RFPL4AL1 large deletion 0.14 TCGA-OR-A5KZ-01 1 208202216 208202216 G C PLXNA2 Silent p.L1799L 0.90 TCGA-OR-A5KZ-01 1 50666855 50666855 C - ELAVL4 3'UTR 0.43 TCGA-OR-A5KZ-01 1 78098574 78098574 C A ZZZ3 Missense_Mutation p.D156Y 0.10 deleterious_low_confidence(0.01) benign(0.429) TCGA-OR-A5KZ-01 20 42157986 42157986 A G L3MBTL1 Missense_Mutation p.Y323C 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5KZ-01 20 48807902 48807902 C - CEBPB Frame_Shift_Del p.Q113Sfs*28 0.32 TCGA-OR-A5KZ-01 21 15750609 15750609 C T HSPA13 Missense_Mutation p.G164E 0.59 deleterious(0.03) probably_damaging(1) TCGA-OR-A5KZ-01 21 46012212 46012213 - G KRTAP10-6 Frame_Shift_Ins p.C52Lfs*22 0.22 TCGA-OR-A5KZ-01 22 24717579 24717579 G T SPECC1L Missense_Mutation p.A211S 0.25 tolerated(0.58) benign(0.007) TCGA-OR-A5KZ-01 2 120834600 120834601 TT - EPB41L5 Frame_Shift_Del p.F187Qfs*8 0.53 TCGA-OR-A5KZ-01 2 158115239 158115239 C G GALNT5 Missense_Mutation p.D215E 0.46 tolerated_low_confidence(0.26) benign(0.002) TCGA-OR-A5KZ-01 2 207513554 207513554 A G DYTN 3'Flank 0.53 TCGA-OR-A5KZ-01 3 10370439 10370439 C T ATP2B2 3'UTR 0.50 TCGA-OR-A5KZ-01 3 44308516 44308516 G A TOPAZ1 Missense_Mutation p.M1016I 0.07 tolerated(0.18) benign(0.019) TCGA-OR-A5KZ-01 3 53259751 53259751 G A TKT 3'UTR 0.89 TCGA-OR-A5KZ-01 3 57616477 57616477 G C DENND6A Silent p.T494T 0.58 TCGA-OR-A5KZ-01 3 74385793 74385793 C T CNTN3 Missense_Mutation p.D461N 0.89 tolerated(0.37) benign(0.442) TCGA-OR-A5KZ-01 3 87027942 87027942 G A VGLL3 Missense_Mutation p.A46V 0.85 tolerated(0.08) probably_damaging(0.998) TCGA-OR-A5KZ-01 5 121758644 121758644 G T SNCAIP Missense_Mutation p.S71I 0.45 deleterious(0) possibly_damaging(0.665) TCGA-OR-A5KZ-01 5 141382735 141382735 G C GNPDA1 Missense_Mutation p.F229L 0.49 tolerated(1) benign(0.007) TCGA-OR-A5KZ-01 5 14387852 14387852 C T TRIO Silent p.L1259L 0.39 TCGA-OR-A5KZ-01 7 55214349 55214349 G A EGFR Missense_Mutation p.V159M 0.07 tolerated(0.21) benign(0.026) TCGA-OR-A5KZ-01 8 144940435 144940435 G A EPPK1 Silent p.L2329L 0.06 TCGA-OR-A5KZ-01 8 53044607 53044607 C G ST18 Missense_Mutation p.W859C 0.51 deleterious(0) probably_damaging(0.999) TCGA-OR-A5KZ-01 8 74464276 74464276 C G STAU2 Missense_Mutation p.E501Q 0.18 tolerated(0.37) possibly_damaging(0.608) TCGA-OR-A5KZ-01 9 113173641 113173641 A T SVEP1 Missense_Mutation p.V2117E 0.33 probably_damaging(0.937) TCGA-OR-A5KZ-01 9 116154411 116154411 G A ALAD Missense_Mutation p.P51L 0.14 deleterious(0) probably_damaging(0.997) TCGA-OR-A5KZ-01 9 139918597 139918597 T C ABCA2 Missense_Mutation p.E53G 0.92 tolerated(0.23) benign(0.002) TCGA-OR-A5L1-01 10 115982440 115982440 C T TDRD1 Silent p.D995D 0.12 TCGA-OR-A5L1-01 10 69571291 69571291 T G DNAJC12 Silent p.S96S 0.35 TCGA-OR-A5L1-01 11 764979 764979 A G TALDO1 3'UTR 0.25 TCGA-OR-A5L1-01 12 4919736 4919736 G A KCNA6 Missense_Mutation p.A177T 0.21 deleterious(0) probably_damaging(0.995) TCGA-OR-A5L1-01 12 54857074 54857074 G T GTSF1 Missense_Mutation p.P42H 0.53 deleterious(0) probably_damaging(0.928) TCGA-OR-A5L1-01 14 19378496 19378496 T C OR11H12 Silent p.N301N 0.22 TCGA-OR-A5L1-01 18 8826196 8826196 C T SOGA2 Missense_Mutation p.S1563L 0.89 tolerated(0.09) possibly_damaging(0.519) TCGA-OR-A5L1-01 19 16861150 16861150 T A NWD1 Missense_Mutation p.L566H 0.44 deleterious(0) probably_damaging(0.979) TCGA-OR-A5L1-01 19 36611666 36611666 G A TBCB Missense_Mutation p.E105K 0.38 tolerated(0.11) benign(0.03) TCGA-OR-A5L1-01 1 149859428 149859428 A G HIST2H2AB Silent p.A13A 0.05 TCGA-OR-A5L1-01 1 153309754 153309754 G A PGLYRP4 Silent p.G282G 0.88 TCGA-OR-A5L1-01 20 3210295 3210318 GCTGGCGTTGAGGGCAGTGTGGAG - SLC4A11 In_Frame_Del p.L575_S582del 0.30 TCGA-OR-A5L1-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.33 deleterious(0) probably_damaging(0.939) TCGA-OR-A5L1-01 3 48420011 48420011 C T FBXW12 Silent p.L204L 0.34 TCGA-OR-A5L1-01 5 112227338 112227338 T C ZRSR1 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-OR-A5L1-01 5 140230462 140230462 T G PCDHA9 Missense_Mutation p.D794E 0.46 tolerated_low_confidence(0.65) benign(0.003) TCGA-OR-A5L1-01 6 11717585 11717585 C T ADTRP Intron 0.94 TCGA-OR-A5L1-01 6 132910157 132910157 A G TAAR5 Silent p.F223F 0.37 TCGA-OR-A5L1-01 6 147054299 147054299 T C ADGB Missense_Mutation p.I855T 0.35 tolerated(0.7) benign(0.001) TCGA-OR-A5L1-01 6 73905203 73905203 G A KCNQ5 3'UTR 0.73 TCGA-OR-A5L1-01 7 129856319 129856319 A G SSMEM1 3'UTR 0.26 TCGA-OR-A5L1-01 7 131084167 131084167 A G MKLN1 Silent p.E226E 0.30 TCGA-OR-A5L1-01 7 72952314 72952314 C A BCL7B Missense_Mutation p.D156Y 0.30 deleterious(0) probably_damaging(0.935) TCGA-OR-A5L1-01 8 87560662 87560662 C T CPNE3 Missense_Mutation p.A338V 0.23 deleterious(0) benign(0.291) TCGA-OR-A5L1-01 9 128724400 128724400 C T PBX3 Silent p.N343N 0.18 TCGA-OR-A5L1-01 9 136030549 136030549 C G GBGT1 Intron 0.53 TCGA-OR-A5L1-01 9 90500470 90500470 C A SPATA31E1 Missense_Mutation p.F356L 0.34 tolerated(0.99) probably_damaging(0.911) TCGA-OR-A5L1-01 X 6451991 6451991 T A VCX3A Missense_Mutation p.E119V 0.27 tolerated(0.33) unknown(0) TCGA-OR-A5L2-01 10 106159171 106159171 A T CCDC147 Missense_Mutation p.E576D 0.16 tolerated(0.32) benign(0.004) TCGA-OR-A5L2-01 10 114711350 114711350 C A TCF7L2 Nonsense_Mutation p.S122* 0.21 TCGA-OR-A5L2-01 10 90528645 90528645 T C LIPN Missense_Mutation p.I211T 0.48 deleterious(0.01) possibly_damaging(0.58) TCGA-OR-A5L2-01 10 91143636 91143636 A T IFIT1B Missense_Mutation p.D189V 0.13 deleterious(0) benign(0.362) TCGA-OR-A5L2-01 10 95931233 95931233 C G PLCE1 Missense_Mutation p.L597V 0.03 deleterious(0) probably_damaging(0.999) TCGA-OR-A5L2-01 11 10796822 10796822 G A CTR9 Missense_Mutation p.R985H 0.21 deleterious(0.01) possibly_damaging(0.522) TCGA-OR-A5L2-01 11 111591721 111591721 G C SIK2 Missense_Mutation p.E627Q 0.04 tolerated(0.3) benign(0.058) TCGA-OR-A5L2-01 11 113628545 113628545 G A ZW10 Missense_Mutation p.P255L 0.19 deleterious(0.01) possibly_damaging(0.554) TCGA-OR-A5L2-01 11 113679796 113679796 G C USP28 Missense_Mutation p.S718C 0.24 deleterious(0.01) possibly_damaging(0.765) TCGA-OR-A5L2-01 11 124618582 124618582 G A VSIG2 Nonsense_Mutation p.Q222* 0.30 TCGA-OR-A5L2-01 11 1642273 1642273 G T KRTAP5-4 3'UTR 0.17 TCGA-OR-A5L2-01 11 2189798 2189798 C T TH Missense_Mutation p.R168H 0.12 tolerated(0.34) benign(0) TCGA-OR-A5L2-01 11 43965005 43965005 C A C11orf96 3'Flank 0.33 TCGA-OR-A5L2-01 11 43965006 43965006 C A C11orf96 3'Flank 0.33 TCGA-OR-A5L2-01 11 49829207 49829207 G C RP11-707M1.1 Intron 0.44 TCGA-OR-A5L2-01 11 55339779 55339779 T A OR4C16 Missense_Mutation p.F59Y 0.05 tolerated(0.07) benign(0.033) TCGA-OR-A5L2-01 11 55432669 55432669 A C OR4C6 Missense_Mutation p.E9D 0.19 deleterious_low_confidence(0.01) benign(0.038) TCGA-OR-A5L2-01 11 55595126 55595126 G A OR5L2 Silent p.L144L 0.21 TCGA-OR-A5L2-01 11 57089372 57089372 A G TNKS1BP1 5'UTR 0.14 TCGA-OR-A5L2-01 11 57948806 57948806 G C OR9Q1 3'UTR 0.22 TCGA-OR-A5L2-01 11 5969056 5969056 T C OR56A3 Silent p.T160T 0.24 TCGA-OR-A5L2-01 11 70228237 70228237 G A PPFIA1 Silent p.R1198R 0.08 TCGA-OR-A5L2-01 11 70333395 70333395 G A SHANK2 Silent p.Y1002Y 0.24 TCGA-OR-A5L2-01 11 75898196 75898196 G A WNT11 Silent p.V326V 0.07 TCGA-OR-A5L2-01 12 102122734 102122734 G A SYCP3 Missense_Mutation p.R228W 0.19 deleterious(0) benign(0.104) TCGA-OR-A5L2-01 12 113906071 113906071 T C LHX5 Missense_Mutation p.K179R 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-OR-A5L2-01 12 117725978 117725978 G A NOS1 Missense_Mutation p.P343L 0.47 tolerated(0.05) benign(0.254) TCGA-OR-A5L2-01 12 119583269 119583269 C T SRRM4 Silent p.Y285Y 0.38 TCGA-OR-A5L2-01 12 120589045 120589045 C T GCN1L1 Missense_Mutation p.V1405M 0.15 probably_damaging(0.981) TCGA-OR-A5L2-01 12 122812908 122812908 C G CLIP1 Missense_Mutation p.S978T 0.19 tolerated(0.27) benign(0.002) TCGA-OR-A5L2-01 12 40927062 40927062 C T MUC19 Intron 0.10 TCGA-OR-A5L2-01 12 4488634 4488634 G C FGF23 Missense_Mutation p.L39V 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-OR-A5L2-01 12 46211485 46211485 G T ARID2 Missense_Mutation p.D151Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-OR-A5L2-01 12 48189737 48189737 T G HDAC7 Silent p.T286T 0.15 TCGA-OR-A5L2-01 12 50136045 50136045 A G TMBIM6 Silent p.G42G 0.08 TCGA-OR-A5L2-01 12 56505284 56505284 C T PA2G4 Nonsense_Mutation p.R364* 0.13 TCGA-OR-A5L2-01 12 57976934 57976934 C G KIF5A Missense_Mutation p.P1024R 0.23 tolerated_low_confidence(0.11) benign(0.026) TCGA-OR-A5L2-01 12 6457898 6457898 C T SCNN1A Missense_Mutation p.V601I 0.14 tolerated(0.56) benign(0.219) TCGA-OR-A5L2-01 12 7060782 7060782 C T PTPN6 Nonsense_Mutation p.R7* 0.08 TCGA-OR-A5L2-01 12 7522051 7522051 C T CD163L1 Missense_Mutation p.R1314Q 0.31 tolerated(0.84) benign(0) TCGA-OR-A5L2-01 13 28367932 28367932 C T GSX1 Silent p.G214G 0.44 TCGA-OR-A5L2-01 14 102484794 102484794 G A DYNC1H1 Silent p.L2728L 0.09 TCGA-OR-A5L2-01 14 78205323 78205323 C A SNW1 Nonsense_Mutation p.E138* 0.09 TCGA-OR-A5L2-01 15 24926710 24926710 A G NPAP1 3'UTR 0.09 TCGA-OR-A5L2-01 15 63970347 63970347 T G HERC1 Missense_Mutation p.K2256T 0.07 possibly_damaging(0.488) TCGA-OR-A5L2-01 15 79290464 79290464 C G RASGRF1 Missense_Mutation p.E996D 0.04 deleterious(0.03) benign(0.335) TCGA-OR-A5L2-01 15 83527785 83527785 G C HOMER2 Missense_Mutation p.Q175E 0.33 tolerated(0.75) benign(0.177) TCGA-OR-A5L2-01 16 14723991 14723991 G A PARN 5'UTR 0.08 TCGA-OR-A5L2-01 16 16302676 16302676 C A ABCC6 Missense_Mutation p.D235Y 0.28 deleterious(0) probably_damaging(0.962) TCGA-OR-A5L2-01 16 46705646 46705646 G A VPS35 Missense_Mutation p.R499C 0.19 tolerated(0.06) possibly_damaging(0.538) TCGA-OR-A5L2-01 16 47005448 47005448 T A DNAJA2 Missense_Mutation p.N59Y 0.33 deleterious(0) probably_damaging(0.964) TCGA-OR-A5L2-01 16 48261750 48261750 G C ABCC11 Nonsense_Mutation p.S121* 0.19 TCGA-OR-A5L2-01 16 5097933 5097933 G T C16orf89 Missense_Mutation p.Q301K 0.44 tolerated(0.59) benign(0.05) TCGA-OR-A5L2-01 16 66420935 66420935 A G CDH5 Missense_Mutation p.N145S 0.05 deleterious(0) possibly_damaging(0.79) TCGA-OR-A5L2-01 17 16704382 16704382 C T CCDC144A 3'UTR 0.17 TCGA-OR-A5L2-01 17 18416643 18416643 C T CTD-2303H24.2 RNA 0.43 TCGA-OR-A5L2-01 17 26110037 26110037 A T NOS2 Missense_Mutation p.F188Y 0.20 tolerated(0.65) benign(0.054) TCGA-OR-A5L2-01 17 31618452 31618452 G C ASIC2 Missense_Mutation p.L228V 0.14 tolerated(0.28) benign(0.113) TCGA-OR-A5L2-01 17 35310421 35310421 G C AATF Missense_Mutation p.E173D 0.37 tolerated(0.22) benign(0.01) TCGA-OR-A5L2-01 17 39619136 39619136 C T KRT32 Missense_Mutation p.R388Q 0.13 tolerated(0.06) benign(0.066) TCGA-OR-A5L2-01 17 39998282 39998282 A T KLHL10 Silent p.S134S 0.06 TCGA-OR-A5L2-01 17 45821703 45821703 C G TBX21 Missense_Mutation p.A304G 0.12 deleterious(0) probably_damaging(0.981) TCGA-OR-A5L2-01 17 48916914 48916914 G A WFIKKN2 Missense_Mutation p.V89M 0.37 deleterious(0) probably_damaging(1) TCGA-OR-A5L2-01 17 52993172 52993172 G C TOM1L1 Missense_Mutation p.L223F 0.21 deleterious(0) probably_damaging(1) TCGA-OR-A5L2-01 17 59560686 59560686 C T TBX4 Nonsense_Mutation p.R483* 0.34 TCGA-OR-A5L2-01 17 65683182 65683182 A G PITPNC1 Intron 0.19 TCGA-OR-A5L2-01 17 77093792 77093792 C T RBFOX3 Missense_Mutation p.G202R 0.19 deleterious(0.01) benign(0.028) TCGA-OR-A5L2-01 18 29340767 29340767 C A SLC25A52 5'UTR 0.17 TCGA-OR-A5L2-01 18 30926226 30926226 C G CCDC178 Missense_Mutation p.D203H 0.08 deleterious(0) probably_damaging(0.998) TCGA-OR-A5L2-01 18 44118286 44118286 T C LOXHD1 Missense_Mutation p.I199V 0.20 tolerated(0.15) probably_damaging(0.989) TCGA-OR-A5L2-01 19 19737970 19737970 C T LPAR2 Missense_Mutation p.V42I 0.07 tolerated(0.22) possibly_damaging(0.581) TCGA-OR-A5L2-01 19 19932549 19932549 C G ZNF506 5'UTR 0.14 TCGA-OR-A5L2-01 19 42814036 42814036 C T PRR19 Silent p.P100P 0.15 TCGA-OR-A5L2-01 19 49104471 49104471 T C FAM83E Silent p.P444P 0.08 TCGA-OR-A5L2-01 19 51527336 51527336 A G KLK11 Missense_Mutation p.L175P 0.12 deleterious(0) probably_damaging(0.98) TCGA-OR-A5L2-01 19 56369429 56369429 G T NLRP4 Nonsense_Mutation p.E224* 0.13 TCGA-OR-A5L2-01 19 57176051 57176051 G T ZNF835 Silent p.G172G 0.09 TCGA-OR-A5L2-01 19 57327088 57327088 C A PEG3 Missense_Mutation p.V908F 0.06 tolerated(0.27) benign(0.096) TCGA-OR-A5L2-01 19 7808071 7808071 C T CD209 Missense_Mutation p.A357T 0.30 deleterious(0.04) benign(0.08) TCGA-OR-A5L2-01 1 12815709 12815709 C A C1orf158 Missense_Mutation p.F57L 0.46 deleterious(0.04) benign(0.022) TCGA-OR-A5L2-01 1 1334591 1334591 C A CCNL2 Silent p.S32S 0.55 TCGA-OR-A5L2-01 1 150443166 150443166 G A RPRD2 Missense_Mutation p.S581N 0.47 tolerated_low_confidence(1) benign(0.001) TCGA-OR-A5L2-01 1 153721204 153721204 G C INTS3 Missense_Mutation p.S186T 0.29 tolerated(0.36) benign(0.004) TCGA-OR-A5L2-01 1 156593357 156593357 A G HAPLN2 Silent p.Q25Q 0.09 TCGA-OR-A5L2-01 1 167042639 167042639 G T GPA33 Missense_Mutation p.L61I 0.22 tolerated(0.31) probably_damaging(0.978) TCGA-OR-A5L2-01 1 175046673 175046673 T A TNN Missense_Mutation p.V40D 0.41 deleterious(0) probably_damaging(0.961) TCGA-OR-A5L2-01 1 200378016 200378016 G A ZNF281 Missense_Mutation p.S273F 0.19 deleterious(0) probably_damaging(0.994) TCGA-OR-A5L2-01 1 214816433 214816433 C T CENPF Silent p.L1584L 0.46 TCGA-OR-A5L2-01 1 216363571 216363571 C T USH2A Missense_Mutation p.A1464T 0.05 possibly_damaging(0.856) TCGA-OR-A5L2-01 1 228563506 228563506 T C OBSCN Silent p.I8546I 0.40 TCGA-OR-A5L2-01 1 233388165 233388165 C G PCNXL2 Missense_Mutation p.G688A 0.07 deleterious(0.03) benign(0.347) TCGA-OR-A5L2-01 1 236722384 236722384 C T HEATR1 Missense_Mutation p.V1608M 0.40 tolerated(1) benign(0.002) TCGA-OR-A5L2-01 1 24766704 24766704 G T NIPAL3 Missense_Mutation p.V46L 0.04 tolerated(0.79) benign(0.039) TCGA-OR-A5L2-01 1 39851188 39851188 G T MACF1 Missense_Mutation p.G2582V 0.40 probably_damaging(0.936) TCGA-OR-A5L2-01 20 31115669 31115669 G A C20orf112 Silent p.V29V 0.28 TCGA-OR-A5L2-01 20 44184408 44184408 C T WFDC8 Missense_Mutation p.R126K 0.10 tolerated(0.53) benign(0.016) TCGA-OR-A5L2-01 20 5170814 5170814 C T CDS2 Silent p.I424I 0.17 TCGA-OR-A5L2-01 20 62333492 62333492 C T ARFRP1 Silent p.A114A 0.36 TCGA-OR-A5L2-01 21 34924819 34924819 G A SON Silent p.S1094S 0.22 TCGA-OR-A5L2-01 21 46355733 46355733 G A C21orf67 Missense_Mutation p.H47Y 0.17 tolerated_low_confidence(0.77) benign(0.291) TCGA-OR-A5L2-01 22 19956287 19956287 C T COMT 3'UTR 0.62 TCGA-OR-A5L2-01 22 29121006 29121006 T A CHEK2 Missense_Mutation p.N227I 0.07 tolerated(0.13) benign(0.211) TCGA-OR-A5L2-01 22 29454817 29454817 C G C22orf31 Missense_Mutation p.Q262H 0.14 tolerated(0.09) benign(0.054) TCGA-OR-A5L2-01 22 37333549 37333549 C G CSF2RB Missense_Mutation p.P567A 0.12 tolerated(0.26) benign(0.02) TCGA-OR-A5L2-01 22 40066230 40066230 G A CACNA1I Missense_Mutation p.R1461H 0.23 deleterious(0.02) possibly_damaging(0.522) TCGA-OR-A5L2-01 22 40140106 40140106 G A ENTHD1 Silent p.L468L 0.16 TCGA-OR-A5L2-01 2 101192892 101192892 C T PDCL3 Silent p.D218D 0.17 TCGA-OR-A5L2-01 2 157185931 157185931 G T NR4A2 Silent p.S256S 0.59 TCGA-OR-A5L2-01 2 160676404 160676404 G T LY75-CD302 Missense_Mutation p.T1329N 0.38 deleterious(0) probably_damaging(0.978) TCGA-OR-A5L2-01 2 179445121 179445121 C A TTN Missense_Mutation p.A22329S 0.36 TCGA-OR-A5L2-01 2 197705832 197705832 C G PGAP1 3'UTR 0.14 TCGA-OR-A5L2-01 2 220149572 220149572 C G DNAJB2 Missense_Mutation p.Q280E 0.08 tolerated(0.13) benign(0.02) TCGA-OR-A5L2-01 2 220354432 220354432 A G SPEG Missense_Mutation p.T2898A 0.57 benign(0.012) TCGA-OR-A5L2-01 2 27850291 27850291 C T CCDC121 Missense_Mutation p.E288K 0.27 tolerated(0.11) possibly_damaging(0.671) TCGA-OR-A5L2-01 2 29274646 29274646 G A FAM179A Missense_Mutation p.R916Q 0.10 tolerated(0.24) benign(0.041) TCGA-OR-A5L2-01 2 29296788 29296788 T C C2orf71 Missense_Mutation p.I114V 0.04 tolerated(0.21) benign(0.023) TCGA-OR-A5L2-01 2 43984346 43984346 T A PLEKHH2 Missense_Mutation p.V1295D 0.05 deleterious(0) possibly_damaging(0.698) TCGA-OR-A5L2-01 2 45801796 45801796 T C SRBD1 Missense_Mutation p.D380G 0.22 deleterious(0) probably_damaging(0.981) TCGA-OR-A5L2-01 2 88327571 88327571 G C KRCC1 Nonsense_Mutation p.S171* 0.39 TCGA-OR-A5L2-01 2 9580674 9580674 C T CPSF3 Missense_Mutation p.S272L 0.32 deleterious(0) probably_damaging(1) TCGA-OR-A5L2-01 2 97475185 97475185 C T CNNM4 Silent p.D753D 0.43 TCGA-OR-A5L2-01 3 123650270 123650270 C T CCDC14 Silent p.V517V 0.18 TCGA-OR-A5L2-01 3 180372596 180372596 G A CCDC39 Missense_Mutation p.T295M 0.22 tolerated(0.14) benign(0.01) TCGA-OR-A5L2-01 3 182941972 182941972 C G MCF2L2 Missense_Mutation p.D708H 0.44 deleterious(0.02) probably_damaging(0.981) TCGA-OR-A5L2-01 3 183975278 183975278 C G ECE2 Missense_Mutation p.L72V 0.09 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-OR-A5L2-01 3 186917619 186917619 C T RTP1 Missense_Mutation p.R185W 0.12 deleterious(0.01) possibly_damaging(0.849) TCGA-OR-A5L2-01 3 194336340 194336340 T C TMEM44 Silent p.Q337Q 0.07 TCGA-OR-A5L2-01 3 35730810 35730810 G T ARPP21 Nonsense_Mutation p.E140* 0.29 TCGA-OR-A5L2-01 3 37055929 37055929 G C MLH1 Silent p.L228L 0.08 TCGA-OR-A5L2-01 3 46730955 46730955 C G ALS2CL Intron 0.20 TCGA-OR-A5L2-01 4 113505163 113505163 T C C4orf21 Silent p.P1423P 0.27 TCGA-OR-A5L2-01 4 122254171 122254171 C T QRFPR Missense_Mutation p.C201Y 0.04 deleterious(0.01) probably_damaging(1) TCGA-OR-A5L2-01 4 158074152 158074152 G T GLRB Missense_Mutation p.S396I 0.15 tolerated(0.06) benign(0.444) TCGA-OR-A5L2-01 4 169369890 169369890 A C DDX60L Missense_Mutation p.V346G 0.13 tolerated(0.39) benign(0.045) TCGA-OR-A5L2-01 4 185686036 185686036 C T ACSL1 Missense_Mutation p.C468Y 0.20 deleterious(0) benign(0.03) TCGA-OR-A5L2-01 4 2990469 2990469 G C GRK4 Missense_Mutation p.S55T 0.08 deleterious(0.04) benign(0.396) TCGA-OR-A5L2-01 4 47788784 47788784 T A CORIN Missense_Mutation p.T123S 0.15 tolerated(0.44) benign(0.002) TCGA-OR-A5L2-01 4 48172291 48172291 C A TEC Missense_Mutation p.C143F 0.22 deleterious(0) probably_damaging(0.999) TCGA-OR-A5L2-01 4 5961285 5961285 A T C4orf50 Silent p.G690G 0.38 TCGA-OR-A5L2-01 4 6718286 6718286 G A BLOC1S4 Missense_Mutation p.G117D 0.41 tolerated(0.2) possibly_damaging(0.528) TCGA-OR-A5L2-01 4 79440544 79440544 C G FRAS1 Missense_Mutation p.I3483M 0.39 possibly_damaging(0.86) TCGA-OR-A5L2-01 4 80327936 80327936 G A GK2 Silent p.S473S 0.10 TCGA-OR-A5L2-01 4 90872784 90872784 G A MMRN1 Silent p.P1049P 0.17 TCGA-OR-A5L2-01 5 10239180 10239180 A T FAM173B Missense_Mutation p.I102N 0.47 deleterious(0) probably_damaging(0.992) TCGA-OR-A5L2-01 5 135276973 135276973 C T FBXL21 RNA 0.40 TCGA-OR-A5L2-01 5 140075331 140075331 C T HARS2 Silent p.D178D 0.15 TCGA-OR-A5L2-01 5 140797965 140797965 T C PCDHGB7 Missense_Mutation p.L180S 0.10 deleterious(0) possibly_damaging(0.896) TCGA-OR-A5L2-01 5 179078708 179078708 G T AC136604.1 Missense_Mutation p.S64I 0.42 deleterious(0.05) benign(0.001) TCGA-OR-A5L2-01 5 180046752 180046752 C T FLT4 Missense_Mutation p.G854S 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5L2-01 5 180166250 180166250 C A OR2Y1 Missense_Mutation p.G270V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5L2-01 5 1879672 1879672 C A IRX4 Nonsense_Mutation p.E228* 0.42 TCGA-OR-A5L2-01 5 56155597 56155597 C T MAP3K1 Missense_Mutation p.A230V 0.13 tolerated_low_confidence(0.11) benign(0.01) TCGA-OR-A5L2-01 5 80409739 80409739 G T RASGRF2 Missense_Mutation p.A824S 0.32 tolerated_low_confidence(1) benign(0.014) TCGA-OR-A5L2-01 6 122772896 122772925 ATTCCTACAAAAAAAAAAAAAAAAAAATAT - SERINC1 Splice_Site p.X254_splice 0.15 TCGA-OR-A5L2-01 6 129465098 129465098 A C LAMA2 Missense_Mutation p.E231A 0.15 tolerated(0.38) benign(0.029) TCGA-OR-A5L2-01 6 131914268 131914268 C T MED23 Nonsense_Mutation p.W1092* 0.45 TCGA-OR-A5L2-01 6 165706896 165706896 A C C6orf118 Intron 0.36 TCGA-OR-A5L2-01 6 30297383 30297383 G A TRIM39 Missense_Mutation p.V97I 0.08 tolerated(0.19) benign(0.154) TCGA-OR-A5L2-01 6 31927812 31927812 C T SKIV2L Missense_Mutation p.A51V 0.15 tolerated(0.32) benign(0.031) TCGA-OR-A5L2-01 6 31927815 31927815 C A SKIV2L Missense_Mutation p.P52Q 0.14 tolerated(0.58) benign(0.034) TCGA-OR-A5L2-01 6 31928995 31928995 A G SKIV2L Silent p.G207G 0.10 TCGA-OR-A5L2-01 6 32782314 32782314 G A HLA-DOB Silent p.H142H 0.13 TCGA-OR-A5L2-01 6 41057410 41057410 C G NFYA Missense_Mutation p.I134M 0.14 deleterious(0.03) unknown(0) TCGA-OR-A5L2-01 6 43181477 43181477 C G CUL9 Missense_Mutation p.P1839A 0.53 tolerated(0.98) benign(0.012) TCGA-OR-A5L2-01 6 51890570 51890570 G A PKHD1 Silent p.N1346N 0.45 TCGA-OR-A5L2-01 6 7904880 7904880 C T TXNDC5 Missense_Mutation p.V114I 0.17 tolerated(0.18) benign(0.259) TCGA-OR-A5L2-01 7 100212602 100212602 T A MOSPD3 Silent p.P208P 0.20 TCGA-OR-A5L2-01 7 120768496 120768496 A T CPED1 Missense_Mutation p.M455L 0.08 tolerated(0.63) benign(0) TCGA-OR-A5L2-01 7 25208036 25208036 G A C7orf31 Silent p.G61G 0.06 TCGA-OR-A5L2-01 7 31123819 31123819 T A ADCYAP1R1 Missense_Mutation p.F131Y 0.03 tolerated(1) benign(0.007) TCGA-OR-A5L2-01 7 72361510 72361510 A G POM121 5'UTR 0.53 TCGA-OR-A5L2-01 7 73649931 73649931 G A RFC2 Silent p.I295I 0.33 TCGA-OR-A5L2-01 8 139793209 139793209 C A COL22A1 Silent p.L537L 0.53 TCGA-OR-A5L2-01 8 2040266 2040266 C A MYOM2 Missense_Mutation p.L641M 0.47 deleterious(0.02) probably_damaging(0.991) TCGA-OR-A5L2-01 8 99442768 99442768 T G KCNS2 3'UTR 0.08 TCGA-OR-A5L2-01 9 104124861 104124861 G T BAAT Missense_Mutation p.S369Y 0.40 tolerated(0.83) probably_damaging(0.935) TCGA-OR-A5L2-01 9 107298937 107298937 A G OR13C3 Missense_Mutation p.I53T 0.17 deleterious(0.04) benign(0) TCGA-OR-A5L2-01 9 117185706 117185706 G A DFNB31 Missense_Mutation p.A505V 0.25 deleterious(0.04) possibly_damaging(0.895) TCGA-OR-A5L2-01 9 119460913 119460913 C G TRIM32 Missense_Mutation p.P298A 0.11 tolerated(0.52) benign(0.388) TCGA-OR-A5L2-01 9 132637739 132637739 C T USP20 Silent p.T733T 0.12 TCGA-OR-A5L2-01 9 133760173 133760173 C T ABL1 Silent p.H851H 0.29 TCGA-OR-A5L2-01 9 35737636 35737636 A G GBA2 Intron 0.02 TCGA-OR-A5L2-01 9 43627272 43627272 A G SPATA31A6 Missense_Mutation p.L472P 0.21 tolerated(0.11) benign(0.117) TCGA-OR-A5L2-01 9 6460639 6460639 G C UHRF2 Missense_Mutation p.L237F 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-OR-A5L2-01 9 6460721 6460721 G C UHRF2 Missense_Mutation p.D265H 0.12 deleterious(0) probably_damaging(0.997) TCGA-OR-A5L2-01 9 73457979 73457979 G C TRPM3 Missense_Mutation p.C247W 0.05 tolerated(0.17) probably_damaging(0.999) TCGA-OR-A5L2-01 9 92220393 92220393 C T GADD45G Nonsense_Mutation p.Q34* 0.43 TCGA-OR-A5L2-01 X 142605206 142605206 G T SPANXN3 Missense_Mutation p.T5N 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-OR-A5L2-01 X 30261199 30261199 G A MAGEB4 Missense_Mutation p.G316E 0.32 tolerated(0.6) unknown(0) TCGA-OR-A5L2-01 X 49107683 49107683 C G FOXP3 3'UTR 0.21 TCGA-OR-A5L2-01 X 49955554 49955554 G C AKAP4 3'UTR 0.09 TCGA-OR-A5L2-01 X 71417263 71417263 C G PIN4 Missense_Mutation p.Q120E 0.20 tolerated(0.33) benign(0.297) TCGA-OR-A5L2-01 X 75648451 75648451 C G MAGEE1 Nonsense_Mutation p.S43* 0.05 TCGA-OR-A5L2-01 X 75650876 75650887 TGCCAGGGAGTC - MAGEE1 In_Frame_Del p.R853_A856del 0.11 TCGA-OR-A5L3-01 10 70243288 70243288 G C SLC25A16 Silent p.L300L 0.23 TCGA-OR-A5L3-01 11 62186541 62186541 C T SCGB1A1 5'UTR 0.39 TCGA-OR-A5L3-01 12 5604093 5604093 G A NTF3 Missense_Mutation p.R251Q 0.30 deleterious(0) probably_damaging(0.974) TCGA-OR-A5L3-01 12 6174404 6174404 T A VWF Missense_Mutation p.S398C 0.35 deleterious(0) probably_damaging(0.997) TCGA-OR-A5L3-01 14 20389141 20389141 A C OR4K5 Missense_Mutation p.I126L 0.16 deleterious(0) benign(0.191) TCGA-OR-A5L3-01 14 31647449 31647449 C T HECTD1 Missense_Mutation p.R51H 0.34 deleterious(0) probably_damaging(0.996) TCGA-OR-A5L3-01 14 76219245 76219245 C T TTLL5 Silent p.L499L 0.35 TCGA-OR-A5L3-01 15 93521561 93521561 A G CHD2 Missense_Mutation p.Q892R 0.25 deleterious(0) probably_damaging(0.999) TCGA-OR-A5L3-01 16 14988885 14988885 G T NOMO1 Nonsense_Mutation p.G1159* 0.18 TCGA-OR-A5L3-01 16 15809040 15809040 G T MYH11 Missense_Mutation p.A1872D 0.11 possibly_damaging(0.719) TCGA-OR-A5L3-01 17 17131266 17131266 G T FLCN Missense_Mutation p.S62R 0.35 tolerated(0.18) benign(0.015) TCGA-OR-A5L3-01 17 39847059 39847059 T C EIF1 Missense_Mutation p.L108P 0.38 deleterious(0) possibly_damaging(0.775) TCGA-OR-A5L3-01 17 68129830 68129830 A T KCNJ16 3'UTR 0.35 TCGA-OR-A5L3-01 18 61223496 61223496 T C SERPINB12 Missense_Mutation p.L35P 0.37 deleterious(0) probably_damaging(0.98) TCGA-OR-A5L3-01 19 41063159 41063159 C T SPTBN4 Silent p.F1840F 0.30 TCGA-OR-A5L3-01 1 152671869 152671869 C T LCE2A 3'UTR 0.38 TCGA-OR-A5L3-01 1 157740445 157740445 G - FCRL2 Frame_Shift_Del p.V23Wfs*14 0.25 TCGA-OR-A5L3-01 1 55337052 55337052 C G DHCR24 Missense_Mutation p.V283L 0.09 tolerated(0.3) benign(0.04) TCGA-OR-A5L3-01 1 93646352 93646352 C T CCDC18 Missense_Mutation p.R25W 0.39 deleterious_low_confidence(0.01) benign(0.057) TCGA-OR-A5L3-01 20 368653 368653 A G TRIB3 Splice_Site p.X1_splice 0.35 TCGA-OR-A5L3-01 22 24709364 24709364 C G SPECC1L Missense_Mutation p.C79W 0.36 deleterious(0.02) benign(0.145) TCGA-OR-A5L3-01 2 108627278 108627278 C T SLC5A7 Silent p.S568S 0.45 TCGA-OR-A5L3-01 2 128281317 128281317 C G IWS1 Missense_Mutation p.G29R 0.31 tolerated_low_confidence(0.16) possibly_damaging(0.637) TCGA-OR-A5L3-01 2 223169588 223169588 C A CCDC140 3'UTR 0.41 TCGA-OR-A5L3-01 2 29295883 29295883 T A C2orf71 Silent p.S415S 0.35 TCGA-OR-A5L3-01 3 33877676 33877676 C T PDCD6IP Silent p.D330D 0.35 TCGA-OR-A5L3-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.42 deleterious(0) probably_damaging(0.939) TCGA-OR-A5L3-01 3 58196641 58196641 C T DNASE1L3 5'UTR 0.36 TCGA-OR-A5L3-01 4 47408836 47408836 G A GABRB1 Missense_Mutation p.A325T 0.40 deleterious(0) probably_damaging(0.969) TCGA-OR-A5L3-01 5 131927722 131927722 T C RAD50 Silent p.L597L 0.38 TCGA-OR-A5L3-01 5 140515569 140515569 C T PCDHB5 Missense_Mutation p.R185C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.746) TCGA-OR-A5L3-01 5 170648797 170648797 A G RANBP17 Missense_Mutation p.N792S 0.42 tolerated(0.09) probably_damaging(0.97) TCGA-OR-A5L3-01 X 105277575 105277575 A T SERPINA7 Missense_Mutation p.D388E 0.42 deleterious(0.02) benign(0.009) TCGA-OR-A5L4-01 10 116225545 116225545 C T ABLIM1 Silent p.T451T 0.38 TCGA-OR-A5L4-01 11 18428729 18428729 C G LDHA Missense_Mutation p.I329M 0.06 deleterious(0) probably_damaging(0.937) TCGA-OR-A5L4-01 11 47772525 47772525 C A FNBP4 Silent p.T283T 0.64 TCGA-OR-A5L4-01 12 11138943 11138943 G T TAS2R50 Missense_Mutation p.H173N 0.10 tolerated(0.2) benign(0.021) TCGA-OR-A5L4-01 12 11183657 11183657 T C TAS2R31 Missense_Mutation p.H93R 0.28 deleterious(0) probably_damaging(0.923) TCGA-OR-A5L4-01 12 93251238 93251238 T C EEA1 Missense_Mutation p.Q90R 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5L4-01 14 29261244 29261244 G T C14orf23 Missense_Mutation p.G94V 0.42 tolerated_low_confidence(0.08) probably_damaging(0.979) TCGA-OR-A5L4-01 14 29261245 29261245 G T C14orf23 Silent p.G94G 0.43 TCGA-OR-A5L4-01 14 59835519 59835519 T C DAAM1 Missense_Mutation p.I1060T 0.42 tolerated(0.43) benign(0.053) TCGA-OR-A5L4-01 16 21652899 21652901 TGT - IGSF6 In_Frame_Del p.N227del 0.35 TCGA-OR-A5L4-01 16 426160 426160 G A TMEM8A Silent p.L400L 0.27 TCGA-OR-A5L4-01 18 7007263 7007263 C T LAMA1 Missense_Mutation p.G1379R 0.44 deleterious(0) probably_damaging(1) TCGA-OR-A5L4-01 19 13879744 13879744 C T MRI1 Silent p.Y277Y 0.21 TCGA-OR-A5L4-01 19 57723887 57723887 C T ZNF264 Silent p.F474F 0.48 TCGA-OR-A5L4-01 1 247599417 247599417 C G NLRP3 Missense_Mutation p.P882A 0.43 deleterious(0.02) benign(0.045) TCGA-OR-A5L4-01 1 29040851 29040851 G A GMEB1 Missense_Mutation p.G430S 0.76 tolerated(0.6) benign(0.098) TCGA-OR-A5L4-01 1 38397696 38397696 A T INPP5B Missense_Mutation p.F141I 0.47 deleterious(0.01) benign(0.356) TCGA-OR-A5L4-01 20 31996515 31996515 C T SNTA1 Missense_Mutation p.G473S 0.42 deleterious(0.02) probably_damaging(0.922) TCGA-OR-A5L4-01 2 110873264 110873264 C T MALL Splice_Site p.X35_splice 0.81 TCGA-OR-A5L4-01 2 179512177 179512177 C A TTN Nonsense_Mutation p.E13358* 0.33 TCGA-OR-A5L4-01 4 54439911 54439911 A T LNX1 Missense_Mutation p.C87S 0.38 deleterious(0) probably_damaging(0.997) TCGA-OR-A5L4-01 4 54440019 54440019 G A LNX1 Missense_Mutation p.P51S 0.45 deleterious(0.01) probably_damaging(1) TCGA-OR-A5L4-01 5 138661351 138661351 G C MATR3 Missense_Mutation p.G791R 0.03 deleterious(0) probably_damaging(0.998) TCGA-OR-A5L4-01 5 140182624 140182624 G T PCDHA3 Silent p.G614G 0.22 TCGA-OR-A5L4-01 5 160025960 160025960 G A ATP10B Silent p.L1127L 0.52 TCGA-OR-A5L4-01 5 175995994 175995994 A G CDHR2 Missense_Mutation p.S100G 0.35 tolerated(0.09) benign(0.14) TCGA-OR-A5L4-01 5 38876350 38876350 A G OSMR Missense_Mutation p.T41A 0.06 tolerated(0.28) benign(0.031) TCGA-OR-A5L4-01 5 56224609 56224609 A - MIER3 Frame_Shift_Del p.I303Yfs*6 0.21 TCGA-OR-A5L4-01 6 107391692 107391692 C T BEND3 Missense_Mutation p.E235K 0.07 deleterious_low_confidence(0.02) benign(0.37) TCGA-OR-A5L4-01 6 139189242 139189242 C A ECT2L Missense_Mutation p.Q493K 0.12 tolerated(0.07) benign(0.149) TCGA-OR-A5L4-01 7 101758537 101758537 G A CUX1 Missense_Mutation p.E231K 0.18 tolerated(0.07) unknown(0) TCGA-OR-A5L4-01 7 151261307 151261307 G T PRKAG2 Missense_Mutation p.L481I 0.50 deleterious(0) possibly_damaging(0.665) TCGA-OR-A5L5-01 11 77412599 77412599 T C RSF1 Missense_Mutation p.T559A 0.41 tolerated_low_confidence(0.44) benign(0.001) TCGA-OR-A5L5-01 12 98848626 98848626 C A SLC9A7P1 RNA 0.07 TCGA-OR-A5L5-01 1 43891735 43891735 G A SZT2 Missense_Mutation p.V986I 0.42 tolerated(1) benign(0.151) TCGA-OR-A5L5-01 1 62675591 62675591 C T L1TD1 Missense_Mutation p.S382F 0.07 deleterious(0.01) unknown(0) TCGA-OR-A5L5-01 20 2573005 2573005 G A TMC2 Missense_Mutation p.R295Q 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-OR-A5L5-01 3 183388949 183388949 G T KLHL24 Missense_Mutation p.S451I 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-OR-A5L5-01 4 68510476 68510476 G T UBA6 Silent p.G472G 0.13 TCGA-OR-A5L5-01 6 27806438 27806439 - CATGCCC HIST1H2BN 5'Flank 0.18 TCGA-OR-A5L5-01 7 100175783 100175783 T A LRCH4 Missense_Mutation p.E316V 0.10 deleterious(0) possibly_damaging(0.776) TCGA-OR-A5L5-01 7 45009379 45009387 GCCAGCAGA - MYO1G In_Frame_Del p.S474_G476del 0.47 TCGA-OR-A5L5-01 7 70227999 70227999 A G AUTS2 Missense_Mutation p.K296E 0.52 tolerated(0.26) possibly_damaging(0.496) TCGA-OR-A5L5-01 9 96846961 96846961 A T PTPDC1 Missense_Mutation p.K50M 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.652) TCGA-OR-A5L5-01 X 3240298 3240298 C G MXRA5 Missense_Mutation p.S1143T 0.46 tolerated(1) benign(0) TCGA-OR-A5L6-01 10 29599974 29599975 TG - LYZL1 Frame_Shift_Del p.C191* 0.19 TCGA-OR-A5L6-01 10 69651221 69651221 C T SIRT1 Missense_Mutation p.A284V 0.32 deleterious(0.01) possibly_damaging(0.876) TCGA-OR-A5L6-01 10 94821064 94821064 C T CYP26C1 Missense_Mutation p.A15V 0.31 tolerated(0.65) benign(0.008) TCGA-OR-A5L6-01 11 5080032 5080032 G A OR52E2 Missense_Mutation p.L276F 0.43 tolerated(0.1) possibly_damaging(0.47) TCGA-OR-A5L6-01 11 55541619 55541619 C G OR5D13 Missense_Mutation p.R236G 0.16 deleterious(0.03) possibly_damaging(0.749) TCGA-OR-A5L6-01 12 124798764 124798764 C T FAM101A Missense_Mutation p.S34L 0.17 deleterious(0) probably_damaging(0.999) TCGA-OR-A5L6-01 12 52828026 52828026 C T KRT75 Silent p.S21S 0.31 TCGA-OR-A5L6-01 13 30346294 30346294 G T UBL3 Missense_Mutation p.L60I 0.40 tolerated(0.23) probably_damaging(0.995) TCGA-OR-A5L6-01 13 36748932 36748932 G A SOHLH2 Missense_Mutation p.A316V 0.24 deleterious(0) probably_damaging(0.999) TCGA-OR-A5L6-01 13 45563771 45563771 C A GPALPP1 5'UTR 0.75 TCGA-OR-A5L6-01 14 77723002 77723002 C T TMEM63C Missense_Mutation p.A785V 0.25 tolerated(0.21) benign(0.004) TCGA-OR-A5L6-01 15 75185139 75185139 A G MPI Silent p.L161L 0.32 TCGA-OR-A5L6-01 16 2580311 2580311 G C AMDHD2 Missense_Mutation p.E446Q 0.22 tolerated_low_confidence(0.06) unknown(0) TCGA-OR-A5L6-01 16 3283814 3283814 A G ZNF200 5'UTR 0.15 TCGA-OR-A5L6-01 16 74752999 74752999 G A FA2H Missense_Mutation p.L225F 0.03 deleterious(0.05) benign(0.182) TCGA-OR-A5L6-01 16 75600314 75600314 G A GABARAPL2 5'UTR 0.49 TCGA-OR-A5L6-01 16 83378514 83378514 G T CDH13 Silent p.P275P 0.14 TCGA-OR-A5L6-01 17 10310241 10310241 C T MYH8 Missense_Mutation p.R674Q 0.23 deleterious(0) possibly_damaging(0.846) TCGA-OR-A5L6-01 19 7915003 7915004 - T EVI5L Frame_Shift_Ins p.Q251Afs*44 0.16 TCGA-OR-A5L6-01 19 9063150 9063150 G C MUC16 Missense_Mutation p.S8099C 0.36 unknown(0) TCGA-OR-A5L6-01 1 169510485 169510485 G T F5 Missense_Mutation p.S1281R 0.03 tolerated_low_confidence(0.47) benign(0.092) TCGA-OR-A5L6-01 1 186047340 186047340 G A HMCN1 Missense_Mutation p.V2863I 0.19 benign(0.009) TCGA-OR-A5L6-01 1 212560297 212560297 A T TMEM206 Silent p.R154R 0.08 TCGA-OR-A5L6-01 1 244583531 244583531 C G ADSS Missense_Mutation p.G244A 0.30 tolerated(0.54) possibly_damaging(0.782) TCGA-OR-A5L6-01 1 44057031 44057031 A G PTPRF Silent p.G446G 0.28 TCGA-OR-A5L6-01 1 65321267 65321267 G A JAK1 Missense_Mutation p.H525Y 0.14 tolerated(0.12) possibly_damaging(0.828) TCGA-OR-A5L6-01 20 2945574 2945574 C G PTPRA Silent p.A47A 0.17 TCGA-OR-A5L6-01 20 33225690 33225693 CTTT - PIGU Frame_Shift_Del p.K139Wfs*7 0.22 TCGA-OR-A5L6-01 20 47605959 47605959 C T ARFGEF2 Missense_Mutation p.R891W 0.49 deleterious(0) probably_damaging(0.995) TCGA-OR-A5L6-01 20 48252968 48252968 G A B4GALT5 Missense_Mutation p.R350W 0.41 deleterious(0) probably_damaging(1) TCGA-OR-A5L6-01 20 56090878 56090878 T C CTCFL Missense_Mutation p.K358E 0.12 deleterious(0) possibly_damaging(0.883) TCGA-OR-A5L6-01 2 122493289 122493289 T C NIFK Missense_Mutation p.Y48C 0.25 deleterious(0.03) possibly_damaging(0.635) TCGA-OR-A5L6-01 2 152382545 152382545 T A NEB Missense_Mutation p.Q7363L 0.20 possibly_damaging(0.636) TCGA-OR-A5L6-01 2 168099448 168099448 G T XIRP2 Missense_Mutation p.D516Y 0.09 benign(0.273) TCGA-OR-A5L6-01 2 228477731 228477731 G T C2orf83 Intron 0.09 TCGA-OR-A5L6-01 2 229890685 229890685 C T PID1 Missense_Mutation p.R137Q 0.35 tolerated(0.13) probably_damaging(0.996) TCGA-OR-A5L6-01 2 234621931 234621931 A T UGT1A5 Missense_Mutation p.Q98H 0.17 tolerated(0.6) benign(0.008) TCGA-OR-A5L6-01 3 164748583 164748583 C G SI Missense_Mutation p.E937Q 0.19 tolerated(0.07) benign(0.029) TCGA-OR-A5L6-01 3 3081625 3081625 G T CNTN4 Intron 0.08 TCGA-OR-A5L6-01 3 49842192 49842192 C T FAM212A Silent p.D212D 0.37 TCGA-OR-A5L6-01 4 114244940 114244940 G T ANK2 Intron 0.16 TCGA-OR-A5L6-01 5 13913969 13913969 G A DNAH5 Silent p.F473F 0.07 TCGA-OR-A5L6-01 5 140572420 140572420 A G PCDHB10 Missense_Mutation p.K99E 0.20 deleterious_low_confidence(0.01) benign(0.015) TCGA-OR-A5L6-01 5 178419079 178419079 G A GRM6 Silent p.P170P 0.60 TCGA-OR-A5L6-01 5 179149880 179149880 A G CANX Missense_Mutation p.S420G 0.19 tolerated(0.26) possibly_damaging(0.478) TCGA-OR-A5L6-01 6 129381036 129381036 C A LAMA2 Missense_Mutation p.Q131K 0.13 tolerated(0.56) benign(0.015) TCGA-OR-A5L6-01 6 33740332 33740332 T A LEMD2 3'UTR 0.47 TCGA-OR-A5L6-01 7 102553550 102553550 G A FBXL13 Missense_Mutation p.L331F 0.09 tolerated(0.05) probably_damaging(0.967) TCGA-OR-A5L6-01 7 150500884 150500884 G T TMEM176A Missense_Mutation p.R173S 0.25 deleterious(0) probably_damaging(1) TCGA-OR-A5L6-01 9 4685143 4685143 G A CDC37L1 Silent p.K133K 0.38 TCGA-OR-A5L6-01 9 8485824 8485824 G T PTPRD Missense_Mutation p.T998K 0.12 deleterious(0) probably_damaging(0.997) TCGA-OR-A5L6-01 9 94985663 94985663 T C IARS Missense_Mutation p.Y1173C 0.44 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-OR-A5L6-01 X 138713564 138713564 A G MCF2 Missense_Mutation p.I153T 0.06 tolerated(0.4) benign(0.007) TCGA-OR-A5L6-01 X 15332559 15332559 C G ASB11 Intron 0.37 TCGA-OR-A5L6-01 X 32407770 32407770 T G DMD Missense_Mutation p.M1456L 0.38 benign(0.025) TCGA-OR-A5L8-01 15 51830641 51830641 T G DMXL2 Missense_Mutation p.N372H 0.09 deleterious(0.04) possibly_damaging(0.473) TCGA-OR-A5L8-01 16 58742148 58742148 C T GOT2 Missense_Mutation p.R407H 0.30 deleterious(0.01) possibly_damaging(0.739) TCGA-OR-A5L8-01 16 72993517 72993517 G A ZFHX3 Silent p.G176G 0.35 TCGA-OR-A5L8-01 17 37922670 37922670 G T IKZF3 Silent p.T301T 0.06 TCGA-OR-A5L8-01 17 38240130 38240130 T C THRA Missense_Mutation p.Y89H 0.26 deleterious(0) probably_damaging(0.999) TCGA-OR-A5L8-01 17 43347828 43347828 C T MAP3K14-AS1 3'Flank 0.38 TCGA-OR-A5L8-01 19 17296757 17296757 C T MYO9B Silent p.L842L 0.19 TCGA-OR-A5L8-01 19 47280654 47280654 G A SLC1A5 Missense_Mutation p.T356M 0.20 deleterious(0) probably_damaging(0.99) TCGA-OR-A5L8-01 19 47935685 47935685 C T SLC8A2 Missense_Mutation p.E710K 0.17 tolerated(0.09) benign(0.294) TCGA-OR-A5L8-01 19 6937659 6937659 G A EMR1 Silent p.T885T 0.25 TCGA-OR-A5L8-01 3 132061444 132061444 C T ACPP Missense_Mutation p.L202F 0.24 tolerated(0.07) benign(0.445) TCGA-OR-A5L8-01 3 196387651 196387651 C T NRROS Silent p.T379T 0.32 TCGA-OR-A5L8-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.37 deleterious(0) probably_damaging(0.939) TCGA-OR-A5L8-01 3 56667845 56667845 C T FAM208A Missense_Mutation p.D992N 0.33 tolerated(0.34) benign(0.199) TCGA-OR-A5L8-01 5 140719726 140719726 G T PCDHGA2 Missense_Mutation p.K396N 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.543) TCGA-OR-A5L8-01 5 90671379 90671379 A C ARRDC3 Missense_Mutation p.S188A 0.26 tolerated(0.27) possibly_damaging(0.526) TCGA-OR-A5L8-01 7 134252962 134252962 A G AKR1B15 Missense_Mutation p.Y68C 0.28 deleterious(0.02) probably_damaging(1) TCGA-OR-A5L8-01 7 136938212 136938212 G A PTN Silent p.G96G 0.38 TCGA-OR-A5L8-01 8 55541829 55541829 C T RP1 Missense_Mutation p.T1796M 0.23 deleterious(0.03) possibly_damaging(0.742) TCGA-OR-A5L8-01 9 111812906 111812906 G T TMEM245 Missense_Mutation p.L641I 0.05 tolerated(0.21) benign(0.327) TCGA-OR-A5L8-01 9 132637028 132637028 G A USP20 Silent p.T638T 0.05 TCGA-OR-A5L8-01 X 119504588 119504588 A G ATP1B4 Missense_Mutation p.Y116C 0.33 deleterious(0) probably_damaging(1) TCGA-OR-A5L9-01 11 3661315 3661315 C T ART5 Missense_Mutation p.R115Q 0.06 tolerated(0.1) possibly_damaging(0.595) TCGA-OR-A5L9-01 12 119594429 119594430 - CGGAGC SRRM4 In_Frame_Ins p.S558_R559dup 0.20 TCGA-OR-A5L9-01 14 21488972 21488972 C G NDRG2 Missense_Mutation p.A147P 0.63 deleterious(0) probably_damaging(0.996) TCGA-OR-A5L9-01 14 54944755 54944755 C T GMFB 3'UTR 0.77 TCGA-OR-A5L9-01 3 13612958 13612958 T C FBLN2 Missense_Mutation p.V368A 0.08 tolerated(0.5) benign(0.003) TCGA-OR-A5L9-01 6 166778845 166778845 A G MPC1 3'UTR 0.78 TCGA-OR-A5L9-01 8 133023204 133023204 T G EFR3A 3'UTR 0.40 TCGA-OR-A5L9-01 8 144917825 144917825 C G NRBP2 3'UTR 0.35 TCGA-OR-A5L9-01 8 87437479 87437479 T G WWP1 Silent p.G363G 0.33 TCGA-OR-A5L9-01 X 153761190 153761190 C T G6PD Missense_Mutation p.V370I 0.36 tolerated(0.3) benign(0.035) TCGA-OR-A5L9-01 X 48676475 48676475 C A HDAC6 Missense_Mutation p.H651Q 0.42 deleterious(0.01) probably_damaging(1) TCGA-OR-A5L9-01 X 70467669 70467669 C T ZMYM3 Missense_Mutation p.R688H 0.41 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LA-01 10 88768599 88768599 C T RP11-96C23.10 3'Flank 0.04 TCGA-OR-A5LA-01 11 102586132 102586132 G A MMP8 Silent p.V313V 0.10 TCGA-OR-A5LA-01 11 1298236 1298236 G A TOLLIP 3'UTR 0.62 TCGA-OR-A5LA-01 11 77920714 77920714 C T USP35 Missense_Mutation p.R605C 0.06 tolerated(0.22) unknown(0) TCGA-OR-A5LA-01 13 24515480 24515480 T A ANKRD20A19P RNA 0.45 TCGA-OR-A5LA-01 17 6903656 6903656 A G ALOX12 Missense_Mutation p.N270S 0.05 tolerated(0.42) benign(0.009) TCGA-OR-A5LA-01 19 5456615 5456615 C T ZNRF4 Silent p.D371D 0.06 TCGA-OR-A5LA-01 20 30309831 30309831 G A BCL2L1 Missense_Mutation p.A64V 0.39 tolerated(0.61) benign(0) TCGA-OR-A5LA-01 2 61463189 61463189 A C USP34 Missense_Mutation p.L2313R 0.41 deleterious(0) possibly_damaging(0.729) TCGA-OR-A5LA-01 3 193380667 193380667 G T OPA1 Missense_Mutation p.E841D 0.50 tolerated(0.62) benign(0.001) TCGA-OR-A5LA-01 5 118970068 118970068 G A FAM170A Missense_Mutation p.V209I 0.39 tolerated(0.13) benign(0.1) TCGA-OR-A5LA-01 6 116783563 116783563 G A FAM26F Silent p.Q157Q 0.58 TCGA-OR-A5LA-01 7 930643 930643 A G GET4 Missense_Mutation p.Y182C 0.29 tolerated(0.05) benign(0.25) TCGA-OR-A5LA-01 X 152966211 152966211 C A BCAP31 3'UTR 0.07 TCGA-OR-A5LB-01 10 104136514 104136514 C T GBF1 Silent p.C1414C 0.15 TCGA-OR-A5LB-01 10 1088637 1088637 C A IDI1 Missense_Mutation p.A158S 0.16 deleterious(0.02) possibly_damaging(0.891) TCGA-OR-A5LB-01 10 115537447 115537447 G A PLEKHS1 3'UTR 0.46 TCGA-OR-A5LB-01 10 115904312 115904312 C T C10orf118 Missense_Mutation p.V389I 0.15 tolerated(0.39) benign(0.003) TCGA-OR-A5LB-01 10 118220558 118220558 G A PNLIPRP3 Missense_Mutation p.V216I 0.43 tolerated(0.12) possibly_damaging(0.621) TCGA-OR-A5LB-01 10 120879946 120879946 C T FAM45A Missense_Mutation p.A192V 0.19 tolerated(0.3) benign(0.005) TCGA-OR-A5LB-01 10 128830513 128830513 G A DOCK1 Missense_Mutation p.G593E 0.44 deleterious(0.05) probably_damaging(0.986) TCGA-OR-A5LB-01 10 134230588 134230588 T C PWWP2B 3'UTR 0.37 TCGA-OR-A5LB-01 10 24783527 24783527 C T KIAA1217 Missense_Mutation p.A593V 0.10 tolerated(0.17) benign(0.041) TCGA-OR-A5LB-01 10 27475567 27475567 T C MASTL 3'UTR 0.38 TCGA-OR-A5LB-01 10 27687470 27687470 T - PTCHD3 Frame_Shift_Del p.N686Mfs*4 0.30 TCGA-OR-A5LB-01 10 38241708 38241710 AGA - ZNF25 In_Frame_Del p.F239del 0.38 TCGA-OR-A5LB-01 10 43691676 43691676 G A RASGEF1A 3'UTR 0.27 TCGA-OR-A5LB-01 10 45484790 45484790 G A RASSF4 Silent p.L200L 0.49 TCGA-OR-A5LB-01 10 56423995 56423995 A C PCDH15 Missense_Mutation p.C10G 0.46 tolerated_low_confidence(0.36) benign(0.084) TCGA-OR-A5LB-01 10 5948345 5948345 A G FBXO18 Missense_Mutation p.D219G 0.21 tolerated(0.56) benign(0.001) TCGA-OR-A5LB-01 10 64573625 64573625 A G EGR2 Missense_Mutation p.V258A 0.45 tolerated(0.06) benign(0.089) TCGA-OR-A5LB-01 10 7269870 7269870 C G SFMBT2 Missense_Mutation p.D384H 0.54 deleterious(0.01) probably_damaging(0.99) TCGA-OR-A5LB-01 10 73046620 73046620 G A UNC5B Missense_Mutation p.V243I 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-OR-A5LB-01 10 8051255 8051255 G A TAF3 Missense_Mutation p.V844M 0.49 deleterious(0) benign(0.001) TCGA-OR-A5LB-01 10 81272930 81272930 C T EIF5AL1 3'UTR 0.48 TCGA-OR-A5LB-01 10 95191176 95191176 G T MYOF Missense_Mutation p.Q112K 0.04 tolerated(0.13) benign(0.003) TCGA-OR-A5LB-01 10 97918856 97918856 A - ZNF518A RNA 0.38 TCGA-OR-A5LB-01 11 10540661 10540663 CTC - RNF141 In_Frame_Del p.E154del 0.83 TCGA-OR-A5LB-01 11 108383875 108383876 - TG EXPH5 Frame_Shift_Ins p.D787Qfs*48 0.46 TCGA-OR-A5LB-01 11 115111112 115111112 G A CADM1 Silent p.D51D 0.38 TCGA-OR-A5LB-01 11 116734454 116734454 G A SIK3 Missense_Mutation p.A572V 0.90 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OR-A5LB-01 11 118344494 118344495 AG - KMT2A Frame_Shift_Del p.D877Pfs*8 0.83 TCGA-OR-A5LB-01 11 18303703 18303703 C T HPS5 Silent p.T1041T 0.91 TCGA-OR-A5LB-01 11 27681195 27681195 T C BDNF Intron 0.87 TCGA-OR-A5LB-01 11 4409704 4409705 - T TRIM21 Frame_Shift_Ins p.N187Kfs*5 0.69 TCGA-OR-A5LB-01 11 64658846 64658846 A T ATG2A 3'Flank 0.89 TCGA-OR-A5LB-01 11 6550209 6550209 G A DNHD1 Missense_Mutation p.M735I 0.87 benign(0.006) TCGA-OR-A5LB-01 11 66361154 66361154 C T CCS Silent p.D27D 0.92 TCGA-OR-A5LB-01 11 76900479 76900479 C T MYO7A Silent p.C1198C 0.06 TCGA-OR-A5LB-01 11 8941056 8941056 T - AKIP1 3'UTR 0.41 TCGA-OR-A5LB-01 12 102437938 102437938 T C CCDC53 Missense_Mutation p.N90S 0.44 tolerated(0.74) benign(0.006) TCGA-OR-A5LB-01 12 105446693 105446693 T A ALDH1L2 Missense_Mutation p.N435I 0.35 deleterious(0) possibly_damaging(0.807) TCGA-OR-A5LB-01 12 10766108 10766108 G A MAGOHB Silent p.Y8Y 0.42 TCGA-OR-A5LB-01 12 111760254 111760254 C T CUX2 Silent p.S932S 0.55 TCGA-OR-A5LB-01 12 115121107 115121107 G - TBX3 5'UTR 0.43 TCGA-OR-A5LB-01 12 123645709 123645710 - A MPHOSPH9 Frame_Shift_Ins p.D967* 0.32 TCGA-OR-A5LB-01 12 12974637 12974638 - A DDX47 Frame_Shift_Ins p.P143Tfs*13 0.33 TCGA-OR-A5LB-01 12 13526224 13526224 G T C12orf36 Missense_Mutation p.Q111K 0.41 benign(0.092) TCGA-OR-A5LB-01 12 3736625 3736625 G A EFCAB4B Missense_Mutation p.R637W 0.18 deleterious(0.02) possibly_damaging(0.532) TCGA-OR-A5LB-01 12 40422218 40422218 T A SLC2A13 Silent p.G270G 0.15 TCGA-OR-A5LB-01 12 49218962 49218962 C T CACNB3 Missense_Mutation p.P170L 0.18 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LB-01 12 51453177 51453177 T C LETMD1 Missense_Mutation p.V362A 0.45 deleterious(0) possibly_damaging(0.877) TCGA-OR-A5LB-01 12 539878 539878 A C CCDC77 Missense_Mutation p.S187R 0.46 tolerated(0.23) benign(0.029) TCGA-OR-A5LB-01 12 54448765 54448765 C A HOXC4 Missense_Mutation p.H191N 0.44 deleterious(0) possibly_damaging(0.758) TCGA-OR-A5LB-01 12 54645832 54645832 T - CBX5 Frame_Shift_Del p.K106Rfs*31 0.50 TCGA-OR-A5LB-01 12 57579562 57579562 G A LRP1 Missense_Mutation p.A2238T 0.44 possibly_damaging(0.856) TCGA-OR-A5LB-01 12 6219643 6219643 G A VWF Silent p.S143S 0.51 TCGA-OR-A5LB-01 12 64660953 64660956 TTGT - C12orf56 3'UTR 0.46 TCGA-OR-A5LB-01 12 64812755 64812755 T - XPOT Frame_Shift_Del p.F126Lfs*6 0.54 TCGA-OR-A5LB-01 12 6787405 6787405 G - ZNF384 Frame_Shift_Del p.R192Gfs*16 0.11 TCGA-OR-A5LB-01 12 7356126 7356126 T G PEX5 Silent p.L330L 0.57 TCGA-OR-A5LB-01 12 75893593 75893593 T - KRR1 Frame_Shift_Del p.K381Sfs*8 0.31 TCGA-OR-A5LB-01 13 103718400 103718400 C T SLC10A2 Missense_Mutation p.G67D 0.09 deleterious(0) probably_damaging(0.992) TCGA-OR-A5LB-01 13 45563471 45563471 C T NUFIP1 Missense_Mutation p.R34Q 0.87 tolerated_low_confidence(0.43) benign(0.005) TCGA-OR-A5LB-01 13 50590277 50590277 C A TRIM13 3'Flank 0.37 TCGA-OR-A5LB-01 13 84454943 84454943 C A SLITRK1 Missense_Mutation p.A234S 0.82 deleterious(0.03) probably_damaging(0.911) TCGA-OR-A5LB-01 13 99339879 99339879 C T SLC15A1 Missense_Mutation p.E595K 0.16 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LB-01 14 105201420 105201420 C T ADSSL1 Missense_Mutation p.P129S 0.20 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LB-01 14 105693009 105693010 - G BRF1 Frame_Shift_Ins p.S293Lfs*15 0.16 TCGA-OR-A5LB-01 14 106091458 106091458 C T IGHG4 Missense_Mutation p.V146M 0.32 tolerated(0.09) possibly_damaging(0.49) TCGA-OR-A5LB-01 14 106815749 106815749 C A IGHV3-33 Missense_Mutation p.E108D 0.41 deleterious_low_confidence(0.03) benign(0.032) TCGA-OR-A5LB-01 14 21992636 21992636 C T SALL2 Missense_Mutation p.R409H 0.02 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LB-01 14 23355347 23355347 C T REM2 Missense_Mutation p.R212W 0.04 deleterious(0.01) benign(0.032) TCGA-OR-A5LB-01 14 23859651 23859651 C T MYH6 Missense_Mutation p.R1116H 0.42 deleterious(0.04) probably_damaging(0.983) TCGA-OR-A5LB-01 14 24538366 24538366 C T LRRC16B Missense_Mutation p.R1335W 0.46 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5LB-01 14 24885257 24885258 CT - NYNRIN Frame_Shift_Del p.L1436Vfs*49 0.43 TCGA-OR-A5LB-01 14 55818555 55818555 T - FBXO34 Frame_Shift_Del p.L485Cfs*13 0.41 TCGA-OR-A5LB-01 14 64596621 64596621 T C SYNE2 Splice_Site p.X4713_splice 0.42 TCGA-OR-A5LB-01 14 91701094 91701094 G T GPR68 Missense_Mutation p.L101M 0.49 tolerated(0.38) probably_damaging(0.928) TCGA-OR-A5LB-01 14 95234657 95234657 G A GSC 3'UTR 0.44 TCGA-OR-A5LB-01 14 95235475 95235475 C T GSC Silent p.S145S 0.27 TCGA-OR-A5LB-01 14 96706741 96706741 G A BDKRB2 Missense_Mutation p.A26T 0.45 tolerated_low_confidence(0.28) benign(0.002) TCGA-OR-A5LB-01 15 29393975 29393975 C T APBA2 Silent p.F504F 0.42 TCGA-OR-A5LB-01 15 32820864 32820865 - A RP11-632K20.7 RNA 0.29 TCGA-OR-A5LB-01 15 34080629 34080629 C T RYR3 Missense_Mutation p.P3267L 0.45 probably_damaging(1) TCGA-OR-A5LB-01 15 34651423 34651423 G A LPCAT4 Nonsense_Mutation p.R494* 0.53 TCGA-OR-A5LB-01 15 38643332 38643332 A G SPRED1 Missense_Mutation p.K268E 0.16 tolerated(0.19) possibly_damaging(0.722) TCGA-OR-A5LB-01 15 38786797 38786797 C T RASGRP1 Missense_Mutation p.G682D 0.47 tolerated(0.25) benign(0.06) TCGA-OR-A5LB-01 15 53908071 53908071 T - WDR72 Frame_Shift_Del p.M778Cfs*9 0.14 TCGA-OR-A5LB-01 15 63076122 63076123 CA - TLN2 Intron 0.32 TCGA-OR-A5LB-01 15 72105933 72105935 CAC AT CTD-2524L6.3 5'Flank 0.29 TCGA-OR-A5LB-01 15 74315308 74315308 C T PML Nonsense_Mutation p.Q248* 0.42 TCGA-OR-A5LB-01 15 80215495 80215495 C - C15orf37 Frame_Shift_Del p.S129Pfs*206 0.43 TCGA-OR-A5LB-01 15 81218052 81218052 C T KIAA1199 Silent p.H792H 0.95 TCGA-OR-A5LB-01 15 90171910 90171910 C - KIF7 Frame_Shift_Del p.A1258Pfs*18 0.16 TCGA-OR-A5LB-01 15 90190208 90190209 - C KIF7 Frame_Shift_Ins p.R549Afs*40 0.32 TCGA-OR-A5LB-01 15 90192528 90192528 G A KIF7 Silent p.N200N 0.53 TCGA-OR-A5LB-01 16 10837696 10837696 C - NUBP1 5'Flank 0.36 TCGA-OR-A5LB-01 16 18864971 18864974 GAGT - SMG1 Frame_Shift_Del p.T1567* 0.39 TCGA-OR-A5LB-01 16 22128481 22128481 A T VWA3A Missense_Mutation p.Y325F 0.45 tolerated(0.08) possibly_damaging(0.893) TCGA-OR-A5LB-01 16 27512657 27512657 T G GTF3C1 Missense_Mutation p.K639T 0.03 deleterious(0) probably_damaging(0.991) TCGA-OR-A5LB-01 16 28509449 28509449 C T APOBR Silent p.R1001R 0.43 TCGA-OR-A5LB-01 16 28909569 28909569 G A ATP2A1 Missense_Mutation p.V521I 0.41 tolerated(0.6) benign(0.31) TCGA-OR-A5LB-01 16 29680802 29680802 G A SPN 3'UTR 0.12 TCGA-OR-A5LB-01 16 30410480 30410480 G T ZNF48 3'UTR 0.43 TCGA-OR-A5LB-01 16 30904237 30904238 TC - BCL7C Frame_Shift_Del p.R68Ifs*25 0.41 TCGA-OR-A5LB-01 16 31439701 31439723 GGGGTCACCTCCCCTCTCTGGGC - COX6A2 5'UTR 0.32 TCGA-OR-A5LB-01 16 4496977 4496977 G A DNAJA3 Missense_Mutation p.A363T 0.92 tolerated(0.24) possibly_damaging(0.734) TCGA-OR-A5LB-01 16 74937919 74937919 G A WDR59 Missense_Mutation p.R598C 0.84 deleterious(0.05) possibly_damaging(0.899) TCGA-OR-A5LB-01 16 81164209 81164209 G A PKD1L2 RNA 0.40 TCGA-OR-A5LB-01 16 835346 835346 C T RPUSD1 3'UTR 0.85 TCGA-OR-A5LB-01 17 11461177 11461177 G A SHISA6 Silent p.P404P 0.90 TCGA-OR-A5LB-01 17 12649333 12649333 A G MYOCD Missense_Mutation p.T357A 0.95 tolerated(0.14) possibly_damaging(0.843) TCGA-OR-A5LB-01 17 15935536 15935536 A C NCOR1 3'UTR 0.87 TCGA-OR-A5LB-01 17 33747391 33747391 C T SLFN12 Missense_Mutation p.S350N 0.82 tolerated(0.32) benign(0) TCGA-OR-A5LB-01 17 34191866 34191866 T A C17orf66 Missense_Mutation p.I117F 0.89 tolerated(0.2) benign(0.01) TCGA-OR-A5LB-01 17 40705710 40705710 C T HSD17B1 Intron 0.83 TCGA-OR-A5LB-01 17 41879215 41879215 C T MPP3 Missense_Mutation p.A538T 0.89 deleterious(0) probably_damaging(1) TCGA-OR-A5LB-01 17 43228479 43228482 CTTC - HEXIM1 3'UTR 0.33 TCGA-OR-A5LB-01 17 43347830 43347830 C T MAP3K14-AS1 3'Flank 0.49 TCGA-OR-A5LB-01 17 4497117 4497119 AGA - SMTNL2 In_Frame_Del p.K245del 0.26 TCGA-OR-A5LB-01 17 46805884 46805884 C - HOXB13 Frame_Shift_Del p.R25Gfs*9 0.47 TCGA-OR-A5LB-01 17 53851112 53851112 C G PCTP Missense_Mutation p.L123V 0.89 deleterious(0.04) benign(0.018) TCGA-OR-A5LB-01 17 54543810 54543810 G A ANKFN1 Missense_Mutation p.E554K 0.05 tolerated(1) benign(0.1) TCGA-OR-A5LB-01 17 71166690 71166690 G A SSTR2 3'UTR 0.93 TCGA-OR-A5LB-01 17 7251702 7251702 G A ACAP1 Missense_Mutation p.R529Q 0.86 tolerated(0.18) benign(0.042) TCGA-OR-A5LB-01 17 7318830 7318830 C T NLGN2 Silent p.R346R 0.05 TCGA-OR-A5LB-01 17 78933974 78933974 G A RPTOR Missense_Mutation p.V1192I 0.19 tolerated(0.06) benign(0.004) TCGA-OR-A5LB-01 17 80350199 80350199 C T OGFOD3 3'UTR 0.85 TCGA-OR-A5LB-01 18 11889445 11889445 G T MPPE1 Missense_Mutation p.H145Q 0.04 tolerated(0.24) probably_damaging(0.981) TCGA-OR-A5LB-01 18 19244151 19244151 T G ABHD3 Missense_Mutation p.E199A 0.85 deleterious(0.01) probably_damaging(1) TCGA-OR-A5LB-01 18 22806811 22806811 C T ZNF521 Silent p.T357T 0.08 TCGA-OR-A5LB-01 18 33706547 33706547 G A SLC39A6 Nonsense_Mutation p.R142* 0.88 TCGA-OR-A5LB-01 18 34289245 34289245 C T FHOD3 Silent p.N633N 0.87 TCGA-OR-A5LB-01 18 44470593 44470593 T - PIAS2 Frame_Shift_Del p.N150Ifs*17 0.86 TCGA-OR-A5LB-01 18 77893731 77893732 TA - ADNP2 Frame_Shift_Del p.K146Ifs*3 0.64 TCGA-OR-A5LB-01 19 10394443 10394443 C A ICAM1 Silent p.P206P 0.40 TCGA-OR-A5LB-01 19 14272167 14272167 C T LPHN1 Silent p.Q494Q 0.49 TCGA-OR-A5LB-01 19 14515325 14515325 G A CD97 Missense_Mutation p.C527Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LB-01 19 14854448 14854448 A G EMR2 Missense_Mutation p.Y778H 0.19 tolerated(0.59) benign(0.32) TCGA-OR-A5LB-01 19 15484604 15484604 G A AKAP8 Missense_Mutation p.R122W 0.44 deleterious(0) probably_damaging(0.975) TCGA-OR-A5LB-01 19 15905080 15905080 C T OR10H5 Silent p.T74T 0.43 TCGA-OR-A5LB-01 19 17994831 17994831 C T SLC5A5 Missense_Mutation p.A501V 0.45 tolerated(0.56) benign(0.001) TCGA-OR-A5LB-01 19 18119374 18119374 C T ARRDC2 Silent p.R85R 0.14 TCGA-OR-A5LB-01 19 19243492 19243492 C A TMEM161A Missense_Mutation p.C87F 0.18 deleterious(0.02) possibly_damaging(0.861) TCGA-OR-A5LB-01 19 20308051 20308052 - A ZNF486 Frame_Shift_Ins p.P181Tfs*8 0.44 TCGA-OR-A5LB-01 19 23991597 23991597 G A RPSAP58 5'UTR 0.43 TCGA-OR-A5LB-01 19 2438488 2438488 C T LMNB2 Missense_Mutation p.R148H 0.45 deleterious(0.02) probably_damaging(1) TCGA-OR-A5LB-01 19 33706703 33706703 C T SLC7A10 Missense_Mutation p.V110I 0.22 tolerated(1) benign(0.314) TCGA-OR-A5LB-01 19 36145482 36145482 G A COX6B1 Missense_Mutation p.R39H 0.21 tolerated(0.1) benign(0.066) TCGA-OR-A5LB-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.21 TCGA-OR-A5LB-01 19 37038306 37038306 T G ZNF529 Missense_Mutation p.Q385P 0.55 deleterious(0) benign(0.415) TCGA-OR-A5LB-01 19 38939333 38939333 C - RYR1 Frame_Shift_Del p.P336Lfs*54 0.33 TCGA-OR-A5LB-01 19 39018334 39018334 C T RYR1 Silent p.G3578G 0.52 TCGA-OR-A5LB-01 19 40900691 40900691 C T PRX Missense_Mutation p.V1190M 0.48 deleterious(0) possibly_damaging(0.781) TCGA-OR-A5LB-01 19 42914911 42914913 AGA - LIPE In_Frame_Del p.F322del 0.88 TCGA-OR-A5LB-01 19 4409751 4409751 C T CHAF1A Missense_Mutation p.R319C 0.42 tolerated(0.19) unknown(0) TCGA-OR-A5LB-01 19 44511172 44511172 C T ZNF230 5'UTR 0.32 TCGA-OR-A5LB-01 19 45655516 45655516 C T NKPD1 Missense_Mutation p.A727T 0.18 tolerated(0.29) benign(0.011) TCGA-OR-A5LB-01 19 45922382 45922382 G A ERCC1 Missense_Mutation p.R167W 0.33 deleterious(0) probably_damaging(1) TCGA-OR-A5LB-01 19 45996512 45996513 - G RTN2 Frame_Shift_Ins p.T314Yfs*31 0.44 TCGA-OR-A5LB-01 19 48048697 48048697 G - ZNF541 Frame_Shift_Del p.D364Tfs*187 0.45 TCGA-OR-A5LB-01 19 48918195 48918195 C T GRIN2D Missense_Mutation p.A496V 0.42 deleterious(0) probably_damaging(0.974) TCGA-OR-A5LB-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.15 TCGA-OR-A5LB-01 19 52568564 52568564 C T ZNF841 Silent p.A857A 0.03 TCGA-OR-A5LB-01 19 53577421 53577421 C T ZNF160 Silent p.T81T 0.47 TCGA-OR-A5LB-01 19 54378382 54378382 C T MYADM 3'UTR 0.57 TCGA-OR-A5LB-01 19 58153343 58153345 ATT - ZNF211 In_Frame_Del p.I562del 0.51 TCGA-OR-A5LB-01 19 5831871 5831871 C T FUT6 Silent p.T236T 0.45 TCGA-OR-A5LB-01 19 6467082 6467082 A G CRB3 3'UTR 0.45 TCGA-OR-A5LB-01 19 6822269 6822269 G A VAV1 Missense_Mutation p.V163M 0.13 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LB-01 19 7605851 7605851 C T PNPLA6 Missense_Mutation p.R289W 0.06 deleterious(0.01) possibly_damaging(0.764) TCGA-OR-A5LB-01 19 8206917 8206917 G A FBN3 Missense_Mutation p.R216C 0.32 deleterious(0.01) probably_damaging(0.952) TCGA-OR-A5LB-01 19 8587291 8587291 C T MYO1F Missense_Mutation p.V1064M 0.05 tolerated(0.05) benign(0.381) TCGA-OR-A5LB-01 1 110766300 110766300 G A KCNC4 Missense_Mutation p.A465T 0.25 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LB-01 1 117131615 117131615 G A IGSF3 Missense_Mutation p.A734V 0.93 deleterious(0.04) probably_damaging(0.912) TCGA-OR-A5LB-01 1 1385898 1385898 G A ATAD3C 5'UTR 0.89 TCGA-OR-A5LB-01 1 149871945 149871945 C T BOLA1 Silent p.P111P 0.92 TCGA-OR-A5LB-01 1 152286313 152286313 G A FLG Missense_Mutation p.A350V 0.03 probably_damaging(0.963) TCGA-OR-A5LB-01 1 153122484 153122484 G T SPRR2G Missense_Mutation p.P35T 0.93 unknown(0) TCGA-OR-A5LB-01 1 154917581 154917583 CTT - PBXIP1 In_Frame_Del p.K705del 0.78 TCGA-OR-A5LB-01 1 156498355 156498355 G A IQGAP3 Missense_Mutation p.A1540V 0.85 deleterious(0.05) benign(0.172) TCGA-OR-A5LB-01 1 161068381 161068382 CA - KLHDC9 Frame_Shift_Del p.P19Rfs*9 0.51 TCGA-OR-A5LB-01 1 163038618 163038618 C A RGS4 5'UTR 0.86 TCGA-OR-A5LB-01 1 175372700 175372700 C T TNR Silent p.E184E 0.85 TCGA-OR-A5LB-01 1 179621206 179621206 C T TDRD5 Silent p.Y678Y 0.90 TCGA-OR-A5LB-01 1 197031011 197031011 G A F13B Silent p.C118C 0.87 TCGA-OR-A5LB-01 1 205273536 205273536 C T NUAK2 Missense_Mutation p.R310Q 0.90 tolerated(0.17) benign(0.101) TCGA-OR-A5LB-01 1 222803533 222803534 - A MIA3 Frame_Shift_Ins p.M993Nfs*3 0.45 TCGA-OR-A5LB-01 1 22852723 22852723 C T ZBTB40 Missense_Mutation p.P1185L 0.92 deleterious(0.04) benign(0) TCGA-OR-A5LB-01 1 2316501 2316501 G A MORN1 Silent p.N151N 0.41 TCGA-OR-A5LB-01 1 233135059 233135059 G A PCNXL2 Missense_Mutation p.R1799C 0.37 deleterious(0.01) benign(0.276) TCGA-OR-A5LB-01 1 40148354 40148354 C T HPCAL4 Missense_Mutation p.G144R 0.93 deleterious(0.01) probably_damaging(0.912) TCGA-OR-A5LB-01 1 47610627 47610627 C G CYP4A22 Missense_Mutation p.R403G 0.89 deleterious(0) possibly_damaging(0.827) TCGA-OR-A5LB-01 1 6246838 6246840 TTC - RPL22 In_Frame_Del p.K93del 0.71 TCGA-OR-A5LB-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.46 TCGA-OR-A5LB-01 20 25052585 25052585 G T VSX1 3'Flank 0.53 TCGA-OR-A5LB-01 20 2637510 2637510 A T NOP56 Missense_Mutation p.N417I 0.45 deleterious(0) probably_damaging(0.984) TCGA-OR-A5LB-01 20 30914608 30914609 - A KIF3B Frame_Shift_Ins p.S597Kfs*2 0.27 TCGA-OR-A5LB-01 20 32266084 32266084 G A E2F1 Silent p.S216S 0.03 TCGA-OR-A5LB-01 20 39713140 39713141 - A TOP1 Frame_Shift_Ins p.V185Sfs*3 0.22 TCGA-OR-A5LB-01 20 4228660 4228660 G A ADRA1D Silent p.A315A 0.60 TCGA-OR-A5LB-01 20 42908175 42908175 G A GDAP1L1 3'UTR 0.43 TCGA-OR-A5LB-01 20 4706560 4706560 G A PRND 3'UTR 0.46 TCGA-OR-A5LB-01 20 57393302 57393302 G T MIR298 RNA 0.44 TCGA-OR-A5LB-01 20 57568155 57568155 G A NELFCD Silent p.A462A 0.24 TCGA-OR-A5LB-01 20 57769225 57769225 G A ZNF831 Missense_Mutation p.A1051T 0.47 tolerated(1) benign(0.001) TCGA-OR-A5LB-01 20 58342325 58342325 C A PHACTR3 Missense_Mutation p.A209D 0.06 tolerated(0.6) benign(0.426) TCGA-OR-A5LB-01 20 60966048 60966048 C A CABLES2 Missense_Mutation p.R472S 0.53 deleterious(0) probably_damaging(0.971) TCGA-OR-A5LB-01 20 61944185 61944185 C T COL20A1 Missense_Mutation p.P659S 0.45 tolerated(0.57) benign(0.07) TCGA-OR-A5LB-01 21 30701923 30701925 GAA - BACH1 In_Frame_Del p.R564del 0.46 TCGA-OR-A5LB-01 21 32638636 32638636 G A TIAM1 Missense_Mutation p.A218V 0.50 tolerated_low_confidence(0.5) benign(0.001) TCGA-OR-A5LB-01 21 46918227 46918227 C G COL18A1 Intron 0.75 TCGA-OR-A5LB-01 22 17072883 17072883 G A CCT8L2 Silent p.H186H 0.92 TCGA-OR-A5LB-01 22 19950020 19950020 C T COMT Intron 0.86 TCGA-OR-A5LB-01 22 24026011 24026011 G A KB-1572G7.2 RNA 0.84 TCGA-OR-A5LB-01 22 28501523 28501523 C T TTC28 Silent p.L1017L 0.93 TCGA-OR-A5LB-01 22 29130427 29130427 G A CHEK2 Nonsense_Mutation p.R95* 0.96 TCGA-OR-A5LB-01 22 29445345 29445345 C - ZNRF3 Frame_Shift_Del p.V394Sfs*4 0.51 TCGA-OR-A5LB-01 22 30868022 30868022 T C SEC14L3 5'UTR 0.91 TCGA-OR-A5LB-01 22 50319196 50319196 G A CRELD2 Missense_Mutation p.A383T 0.93 tolerated(0.23) benign(0.015) TCGA-OR-A5LB-01 22 50722344 50722344 G A PLXNB2 Missense_Mutation p.A780V 0.86 tolerated(1) benign(0) TCGA-OR-A5LB-01 22 50722601 50722601 G A PLXNB2 Silent p.Y741Y 0.93 TCGA-OR-A5LB-01 2 10105471 10105471 C T GRHL1 Silent p.N357N 0.92 TCGA-OR-A5LB-01 2 110962528 110962528 C T NPHP1 Silent p.Q6Q 0.35 TCGA-OR-A5LB-01 2 120015232 120015232 C T STEAP3 Intron 0.89 TCGA-OR-A5LB-01 2 135738728 135738728 T C MAP3K19 Missense_Mutation p.M1195V 0.91 deleterious(0) possibly_damaging(0.728) TCGA-OR-A5LB-01 2 190430180 190430180 G A SLC40A1 Silent p.Y220Y 0.81 TCGA-OR-A5LB-01 2 190640321 190640321 C T ORMDL1 Missense_Mutation p.R99Q 0.27 deleterious(0.03) benign(0.011) TCGA-OR-A5LB-01 2 68270087 68270088 - T C1D Frame_Shift_Ins p.N120Kfs*17 0.25 TCGA-OR-A5LB-01 2 74779681 74779681 C T LOXL3 Silent p.P27P 0.09 TCGA-OR-A5LB-01 2 75105940 75105940 G A HK2 Missense_Mutation p.C386Y 0.40 deleterious(0.05) probably_damaging(0.997) TCGA-OR-A5LB-01 2 85628351 85628351 G A CAPG Silent p.T151T 0.88 TCGA-OR-A5LB-01 2 85628769 85628769 G A CAPG Silent p.A78A 0.87 TCGA-OR-A5LB-01 3 10858122 10858122 G A SLC6A11 Missense_Mutation p.E58K 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-OR-A5LB-01 3 111732487 111732489 CTC - TAGLN3 3'UTR 0.28 TCGA-OR-A5LB-01 3 130159651 130159651 T - COL6A5 Frame_Shift_Del p.L2158Yfs*25 0.26 TCGA-OR-A5LB-01 3 180666228 180666228 A - FXR1 Frame_Shift_Del p.N124Ifs*14 0.77 TCGA-OR-A5LB-01 3 184040329 184040329 T A EIF4G1 Intron 0.92 TCGA-OR-A5LB-01 3 184299402 184299402 C A EPHB3 Missense_Mutation p.Q997K 0.85 tolerated(0.1) benign(0.009) TCGA-OR-A5LB-01 3 194407766 194407766 A G FAM43A Missense_Mutation p.T71A 0.88 deleterious(0.01) benign(0.266) TCGA-OR-A5LB-01 3 36570404 36570406 AGA - STAC In_Frame_Del p.K347del 0.96 TCGA-OR-A5LB-01 3 37042447 37042449 AAG - MLH1 In_Frame_Del p.E71del 0.84 TCGA-OR-A5LB-01 3 39230192 39230192 C T XIRP1 Missense_Mutation p.A249T 0.84 tolerated(0.39) benign(0.021) TCGA-OR-A5LB-01 3 73432786 73432788 CTC - PDZRN3 In_Frame_Del p.E977del 0.91 TCGA-OR-A5LB-01 3 9516182 9516182 A T SETD5 Nonsense_Mutation p.K1183* 0.83 TCGA-OR-A5LB-01 4 113189441 113189441 A G AP1AR Missense_Mutation p.N262S 0.44 tolerated(0.09) benign(0.061) TCGA-OR-A5LB-01 4 114276759 114276759 G A ANK2 Missense_Mutation p.G2329S 0.44 benign(0.008) TCGA-OR-A5LB-01 4 119810165 119810165 T A SYNPO2 5'UTR 0.29 TCGA-OR-A5LB-01 4 126369791 126369791 A - FAT4 Frame_Shift_Del p.D2542Mfs*13 0.30 TCGA-OR-A5LB-01 4 142143548 142143548 C T ZNF330 Missense_Mutation p.A8V 0.49 tolerated(0.12) possibly_damaging(0.812) TCGA-OR-A5LB-01 4 146479121 146479121 A G SMAD1 3'UTR 0.44 TCGA-OR-A5LB-01 4 146653742 146653742 C T C4orf51 3'UTR 0.06 TCGA-OR-A5LB-01 4 156841186 156841186 T - TDO2 3'UTR 0.35 TCGA-OR-A5LB-01 4 185684335 185684335 C T ACSL1 Missense_Mutation p.E503K 0.92 tolerated(0.55) benign(0.003) TCGA-OR-A5LB-01 4 1991593 1991593 C T NELFA Missense_Mutation p.G140D 0.45 tolerated(0.23) benign(0.062) TCGA-OR-A5LB-01 4 20728986 20728987 - T PACRGL 3'UTR 0.30 TCGA-OR-A5LB-01 4 27000929 27000929 G A STIM2 Silent p.Q195Q 0.43 TCGA-OR-A5LB-01 4 2932480 2932480 G - MFSD10 3'UTR 0.12 TCGA-OR-A5LB-01 4 77955764 77955764 T - SEPT11 3'UTR 0.39 TCGA-OR-A5LB-01 4 82126123 82126123 G A PRKG2 Missense_Mutation p.R27W 0.46 deleterious(0) possibly_damaging(0.556) TCGA-OR-A5LB-01 4 89311864 89311865 - C HERC6 Frame_Shift_Ins p.S168Lfs*41 0.32 TCGA-OR-A5LB-01 4 96140294 96140294 G - UNC5C Frame_Shift_Del p.Q491Kfs*15 0.34 TCGA-OR-A5LB-01 5 112720886 112720886 C T MCC Missense_Mutation p.R65H 0.41 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-OR-A5LB-01 5 115335468 115335468 T - AQPEP Frame_Shift_Del p.S464Lfs*15 0.34 TCGA-OR-A5LB-01 5 127728872 127728872 G A FBN2 Missense_Mutation p.A474V 0.48 tolerated(0.61) possibly_damaging(0.447) TCGA-OR-A5LB-01 5 131398530 131398530 C T IL3 3'UTR 0.55 TCGA-OR-A5LB-01 5 134086655 134086657 AGA - CAMLG 3'UTR 0.19 TCGA-OR-A5LB-01 5 13766210 13766210 C T DNAH5 Missense_Mutation p.V3326I 0.60 benign(0.312) TCGA-OR-A5LB-01 5 167674716 167674716 G A TENM2 Missense_Mutation p.G2258R 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5LB-01 5 172315747 172315747 G A ERGIC1 Silent p.T22T 0.38 TCGA-OR-A5LB-01 5 175824972 175824972 C T CLTB Missense_Mutation p.R104H 0.16 deleterious(0.05) probably_damaging(0.97) TCGA-OR-A5LB-01 5 176687121 176687121 C T NSD1 Nonsense_Mutation p.R1700* 0.14 TCGA-OR-A5LB-01 5 179564923 179564923 C A RASGEF1C Nonsense_Mutation p.E44* 0.17 TCGA-OR-A5LB-01 5 34998917 34998917 C T AGXT2 Silent p.A484A 0.40 TCGA-OR-A5LB-01 5 37348627 37348628 AG - NUP155 Frame_Shift_Del p.S325Cfs*4 0.33 TCGA-OR-A5LB-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.15 TCGA-OR-A5LB-01 5 43039623 43039623 C T ANXA2R Missense_Mutation p.A176T 0.55 tolerated(0.19) benign(0.116) TCGA-OR-A5LB-01 5 64100133 64100134 - A CWC27 Frame_Shift_Ins p.L289Ifs*10 0.35 TCGA-OR-A5LB-01 5 94994526 94994526 C A SPATA9 Missense_Mutation p.C189F 0.45 tolerated_low_confidence(0.43) benign(0) TCGA-OR-A5LB-01 6 144086413 144086414 - A PHACTR2 Frame_Shift_Ins p.T240Nfs*5 0.77 TCGA-OR-A5LB-01 6 152751308 152751308 G A SYNE1 Missense_Mutation p.A1576V 0.91 benign(0.282) TCGA-OR-A5LB-01 6 27860939 27860939 C A HIST1H2AM 5'UTR 0.89 TCGA-OR-A5LB-01 6 31857309 31857311 TCT - EHMT2 In_Frame_Del p.E323del 0.16 TCGA-OR-A5LB-01 6 32370751 32370751 C T BTNL2 Missense_Mutation p.V224I 0.87 tolerated(0.74) benign(0.021) TCGA-OR-A5LB-01 6 33245779 33245779 C T B3GALT4 Missense_Mutation p.R195C 0.89 tolerated_low_confidence(0.06) possibly_damaging(0.809) TCGA-OR-A5LB-01 6 33288228 33288232 TCTTT - DAXX Frame_Shift_Del p.R394Sfs*22 0.86 TCGA-OR-A5LB-01 6 53519456 53519456 C A KLHL31 Silent p.S205S 0.86 TCGA-OR-A5LB-01 6 99771340 99771340 C T FAXC Missense_Mutation p.R268Q 0.92 tolerated(0.12) benign(0.063) TCGA-OR-A5LB-01 7 108205526 108205526 T - THAP5 Frame_Shift_Del p.K99Nfs*25 0.33 TCGA-OR-A5LB-01 7 113519565 113519565 C A PPP1R3A Nonsense_Mutation p.E528* 0.17 TCGA-OR-A5LB-01 7 128517759 128517759 C T KCP RNA 0.02 TCGA-OR-A5LB-01 7 130021521 130021521 A G CPA1 Silent p.R66R 0.44 TCGA-OR-A5LB-01 7 132959896 132959896 C T EXOC4 Silent p.R82R 0.41 TCGA-OR-A5LB-01 7 139726084 139726084 C T PARP12 Missense_Mutation p.G565S 0.53 deleterious(0) probably_damaging(1) TCGA-OR-A5LB-01 7 142836798 142836798 C A PIP 3'UTR 0.65 TCGA-OR-A5LB-01 7 151878058 151878058 C T KMT2C Missense_Mutation p.R2296H 0.03 benign(0.003) TCGA-OR-A5LB-01 7 158738347 158738347 G A WDR60 Silent p.A1026A 0.43 TCGA-OR-A5LB-01 7 28996482 28996482 G - AC005013.5 5'Flank 0.20 TCGA-OR-A5LB-01 7 48311657 48311657 C T ABCA13 Silent p.N798N 0.41 TCGA-OR-A5LB-01 7 50129273 50129273 G A ZPBP Missense_Mutation p.R54C 0.45 deleterious(0.03) possibly_damaging(0.719) TCGA-OR-A5LB-01 7 6026767 6026767 G A PMS2 Silent p.D543D 0.47 TCGA-OR-A5LB-01 7 73944069 73944069 G A GTF2IRD1 Missense_Mutation p.A398T 0.21 deleterious(0) possibly_damaging(0.892) TCGA-OR-A5LB-01 7 98452922 98452923 - A TMEM130 Frame_Shift_Ins p.L248Ffs*33 0.12 TCGA-OR-A5LB-01 8 103297940 103297940 G T UBR5 Missense_Mutation p.A1762D 0.89 deleterious(0.03) probably_damaging(0.991) TCGA-OR-A5LB-01 8 11839860 11839860 G A DEFB135 Missense_Mutation p.V11M 0.93 tolerated(0.16) benign(0.199) TCGA-OR-A5LB-01 8 67511292 67511294 TCT - MYBL1 In_Frame_Del p.E94del 0.76 TCGA-OR-A5LB-01 9 117552692 117552692 G A TNFSF15 3'UTR 0.53 TCGA-OR-A5LB-01 9 123290085 123290085 T - CDK5RAP2 Frame_Shift_Del p.K333Rfs*76 0.32 TCGA-OR-A5LB-01 9 124584810 124584810 G A TTLL11 3'UTR 0.54 TCGA-OR-A5LB-01 9 12704553 12704553 A G TYRP1 Missense_Mutation p.D370G 0.98 deleterious(0.02) probably_damaging(0.973) TCGA-OR-A5LB-01 9 127253373 127253375 GAT - NR5A1 In_Frame_Del p.I375del 0.49 TCGA-OR-A5LB-01 9 127674275 127674275 C T GOLGA1 Missense_Mutation p.V292I 0.54 tolerated(0.06) benign(0.001) TCGA-OR-A5LB-01 9 128069806 128069806 T C GAPVD1 Missense_Mutation p.Y411H 0.06 tolerated(0.54) benign(0.004) TCGA-OR-A5LB-01 9 131022875 131022875 C - GOLGA2 Frame_Shift_Del p.E516Sfs*42 0.18 TCGA-OR-A5LB-01 9 136303424 136303424 G A ADAMTS13 Missense_Mutation p.C548Y 0.04 deleterious(0) probably_damaging(1) TCGA-OR-A5LB-01 9 136320474 136320474 C T ADAMTS13 Missense_Mutation p.A1106V 0.29 tolerated(0.54) benign(0.009) TCGA-OR-A5LB-01 9 136918407 136918407 C T BRD3 Missense_Mutation p.A65T 0.48 deleterious(0.01) probably_damaging(0.94) TCGA-OR-A5LB-01 9 137777089 137777089 G A FCN2 Silent p.P102P 0.55 TCGA-OR-A5LB-01 9 138377451 138377451 C T PPP1R26 Silent p.D365D 0.49 TCGA-OR-A5LB-01 9 138662903 138662903 C T KCNT1 Missense_Mutation p.P657L 0.55 tolerated(0.21) benign(0.002) TCGA-OR-A5LB-01 9 138669186 138669186 C T KCNT1 Silent p.G784G 0.09 TCGA-OR-A5LB-01 9 140055846 140055846 G A GRIN1 Missense_Mutation p.G503D 0.15 deleterious(0) probably_damaging(0.912) TCGA-OR-A5LB-01 9 140099815 140099815 C A TMEM203 Nonsense_Mutation p.E18* 0.30 TCGA-OR-A5LB-01 9 141015261 141015261 G A CACNA1B Silent p.P2139P 0.37 TCGA-OR-A5LB-01 9 36170452 36170452 C A CCIN Missense_Mutation p.A318E 0.05 deleterious(0.02) possibly_damaging(0.609) TCGA-OR-A5LB-01 9 77613553 77613553 T C C9orf41 Missense_Mutation p.M291V 0.45 tolerated(0.09) possibly_damaging(0.768) TCGA-OR-A5LB-01 9 91949587 91949587 C T SECISBP2 Missense_Mutation p.A344V 0.37 tolerated(1) benign(0) TCGA-OR-A5LB-01 9 99538465 99538465 G T ZNF510 5'UTR 0.55 TCGA-OR-A5LB-01 X 100667308 100667308 G A HNRNPH2 Missense_Mutation p.G111D 0.93 deleterious(0) benign(0.147) TCGA-OR-A5LB-01 X 110497633 110497633 T C CAPN6 Splice_Site p.X56_splice 0.54 TCGA-OR-A5LB-01 X 118215302 118215302 A T KIAA1210 Missense_Mutation p.I1707N 0.97 deleterious(0.01) benign(0.103) TCGA-OR-A5LB-01 X 132437297 132437297 G A GPC4 Silent p.S455S 0.91 TCGA-OR-A5LB-01 X 140994548 140994548 A G MAGEC1 Missense_Mutation p.Y453C 0.97 deleterious_low_confidence(0.03) benign(0.001) TCGA-OR-A5LB-01 X 153225825 153225825 C A HCFC1 Missense_Mutation p.E315D 0.91 tolerated(0.06) probably_damaging(0.991) TCGA-OR-A5LB-01 X 154004462 154004462 C T DKC1 Missense_Mutation p.R447W 0.37 deleterious(0) possibly_damaging(0.545) TCGA-OR-A5LB-01 X 53438821 53438823 CTT - SMC1A In_Frame_Del p.E381del 0.92 TCGA-OR-A5LB-01 X 57936947 57936947 A - ZXDA 5'UTR 0.41 TCGA-OR-A5LB-01 X 72667191 72667191 C T CDX4 Silent p.G34G 0.91 TCGA-OR-A5LB-01 X 96139817 96139817 A G RPA4 Missense_Mutation p.K170E 0.38 tolerated(0.05) possibly_damaging(0.48) TCGA-OR-A5LC-01 10 113924340 113924340 G A GPAM Missense_Mutation p.P417L 0.47 tolerated(0.36) benign(0.178) TCGA-OR-A5LC-01 10 118318731 118318731 T G PNLIP Silent p.P332P 0.46 TCGA-OR-A5LC-01 10 84745227 84745227 G A NRG3 Missense_Mutation p.A653T 0.44 tolerated_low_confidence(0.17) benign(0.084) TCGA-OR-A5LC-01 10 98386618 98386618 G C PIK3AP1 Missense_Mutation p.L506V 0.47 tolerated(0.6) benign(0.002) TCGA-OR-A5LC-01 11 1471882 1471882 G A BRSK2 Silent p.T497T 0.84 TCGA-OR-A5LC-01 11 64896099 64896099 G T SYVN1 Missense_Mutation p.S561R 0.08 tolerated(0.36) unknown(0) TCGA-OR-A5LC-01 12 123738436 123738436 G T C12orf65 Missense_Mutation p.G72V 0.39 deleterious(0) probably_damaging(1) TCGA-OR-A5LC-01 12 21196449 21196449 T C SLCO1B7 Silent p.D256D 0.39 TCGA-OR-A5LC-01 12 72091182 72091182 G T TMEM19 Missense_Mutation p.A169S 0.05 tolerated(0.49) probably_damaging(0.954) TCGA-OR-A5LC-01 12 89916603 89916603 C T GALNT4 Missense_Mutation p.S575N 0.23 tolerated(0.31) benign(0.021) TCGA-OR-A5LC-01 13 61986775 61986775 T C PCDH20 Missense_Mutation p.E486G 0.51 deleterious(0) possibly_damaging(0.827) TCGA-OR-A5LC-01 13 73636282 73636282 C T KLF5 Missense_Mutation p.P182L 0.49 tolerated(0.06) benign(0.32) TCGA-OR-A5LC-01 14 36004341 36004341 G C INSM2 Missense_Mutation p.E295Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LC-01 14 74191989 74191989 G - ELMSAN1 Frame_Shift_Del p.L854Wfs*5 0.48 TCGA-OR-A5LC-01 15 34394051 34394051 C T EMC7 5'UTR 0.26 TCGA-OR-A5LC-01 15 42452865 42452865 G A VPS39 3'UTR 0.50 TCGA-OR-A5LC-01 15 44858189 44858189 C A SPG11 Missense_Mutation p.A2288S 0.06 tolerated(0.21) possibly_damaging(0.866) TCGA-OR-A5LC-01 15 85656649 85656650 TC - PDE8A Frame_Shift_Del p.S386Hfs*4 0.20 TCGA-OR-A5LC-01 16 28844676 28844676 G T ATXN2L Splice_Site p.X652_splice 0.47 TCGA-OR-A5LC-01 16 86613821 86613821 G A FOXL1 3'UTR 0.47 TCGA-OR-A5LC-01 17 2966182 2966182 G T OR1D5 Silent p.T240T 0.39 TCGA-OR-A5LC-01 19 14951843 14951843 G T OR7A10 Missense_Mutation p.P283T 0.46 deleterious_low_confidence(0) possibly_damaging(0.674) TCGA-OR-A5LC-01 19 35843174 35843174 C A FFAR1 Nonsense_Mutation p.Y240* 0.27 TCGA-OR-A5LC-01 19 38845375 38845375 C T CATSPERG Silent p.S341S 0.45 TCGA-OR-A5LC-01 19 49699903 49699903 A G TRPM4 Missense_Mutation p.Q806R 0.49 tolerated(0.49) benign(0.003) TCGA-OR-A5LC-01 19 51172454 51172454 G T SHANK1 Silent p.P921P 0.47 TCGA-OR-A5LC-01 19 54140161 54140161 C G DPRX Silent p.P165P 0.44 TCGA-OR-A5LC-01 19 58500063 58500063 G A ZNF606 Silent p.A68A 0.47 TCGA-OR-A5LC-01 19 8595175 8595175 C A MYO1F Missense_Mutation p.G745W 0.20 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LC-01 1 152188140 152188140 C T HRNR Missense_Mutation p.G1989S 0.04 unknown(0) TCGA-OR-A5LC-01 1 152280081 152280081 G T FLG Silent p.A2427A 0.24 TCGA-OR-A5LC-01 1 228526051 228526051 G A OBSCN Missense_Mutation p.D6645N 0.17 possibly_damaging(0.818) TCGA-OR-A5LC-01 1 71512493 71512493 C T PTGER3 Silent p.L256L 0.04 TCGA-OR-A5LC-01 20 42233641 42233641 G T IFT52 Splice_Site p.X138_splice 0.45 TCGA-OR-A5LC-01 20 58450354 58450354 G T SYCP2 Silent p.G1107G 0.07 TCGA-OR-A5LC-01 20 62705725 62705725 C T RGS19 Silent p.T78T 0.49 TCGA-OR-A5LC-01 21 44524486 44524486 A G U2AF1 Missense_Mutation p.I24T 0.36 deleterious(0.03) benign(0.305) TCGA-OR-A5LC-01 22 28503713 28503713 A G TTC28 Missense_Mutation p.L707P 0.85 deleterious(0) probably_damaging(0.99) TCGA-OR-A5LC-01 22 30887672 30887672 C G SEC14L4 Missense_Mutation p.K323N 0.09 tolerated(0.07) possibly_damaging(0.905) TCGA-OR-A5LC-01 2 168108439 168108439 G A XIRP2 Missense_Mutation p.E3513K 0.12 possibly_damaging(0.713) TCGA-OR-A5LC-01 2 223917881 223917881 C T KCNE4 Silent p.P111P 0.32 TCGA-OR-A5LC-01 2 84771405 84771405 C T DNAH6 Silent p.S237S 0.39 TCGA-OR-A5LC-01 3 195508392 195508392 T A MUC4 Silent p.V3353V 0.17 TCGA-OR-A5LC-01 3 3030028 3030028 G A CNTN4 Splice_Site p.X453_splice 0.08 TCGA-OR-A5LC-01 3 47455269 47455269 C T SCAP 3'UTR 0.35 TCGA-OR-A5LC-01 3 58631299 58631299 G A FAM3D Missense_Mutation p.A67V 0.57 deleterious(0.01) probably_damaging(0.977) TCGA-OR-A5LC-01 3 64536626 64536626 C T ADAMTS9 Missense_Mutation p.R1604H 0.55 tolerated(0.54) benign(0.003) TCGA-OR-A5LC-01 4 122853648 122853648 C A TRPC3 Missense_Mutation p.K255N 0.35 deleterious(0) probably_damaging(0.949) TCGA-OR-A5LC-01 4 138452025 138452025 T C PCDH18 Silent p.K406K 0.25 TCGA-OR-A5LC-01 4 1905977 1905977 G A WHSC1 Missense_Mutation p.G211E 0.39 tolerated(1) benign(0.007) TCGA-OR-A5LC-01 4 6302448 6302448 G T WFS1 Missense_Mutation p.R309M 0.56 deleterious(0) possibly_damaging(0.627) TCGA-OR-A5LC-01 5 16671084 16671084 G T MYO10 Missense_Mutation p.H1812N 0.16 deleterious(0.03) probably_damaging(0.992) TCGA-OR-A5LC-01 5 1879909 1879909 C A IRX4 Missense_Mutation p.A149S 0.77 deleterious(0) probably_damaging(0.98) TCGA-OR-A5LC-01 5 39308392 39308392 T A C9 Missense_Mutation p.I394F 0.46 tolerated(0.42) benign(0.02) TCGA-OR-A5LC-01 5 41032905 41032905 G A MROH2B Missense_Mutation p.P794S 0.35 deleterious(0) possibly_damaging(0.493) TCGA-OR-A5LC-01 6 116892732 116892732 G T RWDD1 5'UTR 0.11 TCGA-OR-A5LC-01 7 150873649 150873649 C A ASB10 Splice_Site p.X406_splice 0.47 TCGA-OR-A5LC-01 7 157041208 157041208 C T UBE3C Silent p.Y876Y 0.06 TCGA-OR-A5LC-01 7 20418693 20418693 G A ITGB8 Missense_Mutation p.M136I 0.32 tolerated(0.63) benign(0.006) TCGA-OR-A5LC-01 7 45002430 45002430 G A MYO1G Missense_Mutation p.R989C 0.60 tolerated(0.2) probably_damaging(0.999) TCGA-OR-A5LC-01 8 114186110 114186110 G A CSMD3 Missense_Mutation p.P184S 0.42 deleterious(0.02) benign(0.266) TCGA-OR-A5LC-01 9 35716437 35716437 C T TLN1 Missense_Mutation p.A859T 0.86 tolerated(0.05) probably_damaging(0.989) TCGA-OR-A5LC-01 9 79954597 79954597 A T VPS13A Missense_Mutation p.S2182C 0.50 tolerated(0.9) benign(0.353) TCGA-OR-A5LC-01 9 98735135 98735135 C G ERCC6L2 3'Flank 0.78 TCGA-OR-A5LC-01 9 98775122 98775122 G T ERCC6L2 Silent p.L402L 0.07 TCGA-OR-A5LC-01 X 117925779 117925779 G T IL13RA1 Missense_Mutation p.V416L 0.35 tolerated(0.36) probably_damaging(0.914) TCGA-OR-A5LC-01 X 129155104 129155104 C T BCORL1 Nonsense_Mutation p.R1196* 0.49 TCGA-OR-A5LC-01 X 135313873 135313873 C T MAP7D3 Missense_Mutation p.E415K 0.49 deleterious(0.02) possibly_damaging(0.584) TCGA-OR-A5LD-01 10 123842918 123842918 A T TACC2 Silent p.T301T 0.07 TCGA-OR-A5LD-01 10 134736085 134736085 G A TTC40 Missense_Mutation p.R462W 0.31 deleterious(0) possibly_damaging(0.599) TCGA-OR-A5LD-01 10 135015372 135015372 G T KNDC1 Silent p.A1119A 0.07 TCGA-OR-A5LD-01 11 101375498 101375498 G A TRPC6 Missense_Mutation p.R68W 0.16 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-OR-A5LD-01 11 124631990 124631990 T C ESAM Missense_Mutation p.S21G 0.28 tolerated(0.06) benign(0.257) TCGA-OR-A5LD-01 11 134240910 134240910 G C GLB1L2 Missense_Mutation p.K408N 0.20 tolerated(0.11) benign(0.003) TCGA-OR-A5LD-01 11 34097794 34097795 AA - CAPRIN1 Frame_Shift_Del p.I127Kfs*15 0.20 TCGA-OR-A5LD-01 11 3845677 3845677 C T PGAP2 Intron 0.14 TCGA-OR-A5LD-01 11 4608887 4608887 A C OR52I2 Missense_Mutation p.Y282S 0.23 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LD-01 11 59807922 59807922 C T OOSP2 5'UTR 0.12 TCGA-OR-A5LD-01 11 65167232 65167232 G A FRMD8 Missense_Mutation p.D277N 0.12 deleterious(0) probably_damaging(0.987) TCGA-OR-A5LD-01 11 65167323 65167323 G C FRMD8 Missense_Mutation p.R307T 0.15 tolerated(0.42) benign(0.142) TCGA-OR-A5LD-01 11 7982583 7982583 G A NLRP10 Silent p.T192T 0.18 TCGA-OR-A5LD-01 12 125561105 125561105 A C AACS Silent p.A102A 0.23 TCGA-OR-A5LD-01 12 132633391 132633391 G C NOC4L Silent p.L284L 0.19 TCGA-OR-A5LD-01 12 40441854 40441854 T A SLC2A13 Missense_Mutation p.R239W 0.15 deleterious(0) probably_damaging(1) TCGA-OR-A5LD-01 12 49957272 49957272 G A MCRS1 Silent p.S218S 0.24 TCGA-OR-A5LD-01 12 85677521 85677521 G A ALX1 Missense_Mutation p.R133Q 0.19 deleterious(0) probably_damaging(0.988) TCGA-OR-A5LD-01 13 50204849 50204849 A G ARL11 Missense_Mutation p.D89G 0.11 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LD-01 13 50204863 50204863 G T ARL11 Missense_Mutation p.A94S 0.12 tolerated(0.33) possibly_damaging(0.527) TCGA-OR-A5LD-01 14 102842998 102842998 C T TECPR2 5'UTR 0.26 TCGA-OR-A5LD-01 14 105404743 105404743 C T AHNAK2 Missense_Mutation p.R5682Q 0.29 possibly_damaging(0.644) TCGA-OR-A5LD-01 14 92920319 92920319 T A SLC24A4 Missense_Mutation p.F319Y 0.26 tolerated(0.24) benign(0.002) TCGA-OR-A5LD-01 15 51981440 51981440 C G SCG3 Missense_Mutation p.L189V 0.10 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LD-01 16 15596190 15596190 C A C16orf45 Intron 0.10 TCGA-OR-A5LD-01 16 15690461 15690462 AC - KIAA0430 3'UTR 0.22 TCGA-OR-A5LD-01 16 27503663 27503663 T C GTF3C1 Silent p.P1049P 0.17 TCGA-OR-A5LD-01 16 29870513 29870515 CTT - CDIPT In_Frame_Del p.K213del 0.31 TCGA-OR-A5LD-01 16 48245093 48245093 C T ABCC11 Silent p.E458E 0.13 TCGA-OR-A5LD-01 16 48595678 48595678 T G N4BP1 Missense_Mutation p.E292D 0.21 tolerated(0.16) possibly_damaging(0.667) TCGA-OR-A5LD-01 16 67234630 67234630 G A ELMO3 Missense_Mutation p.S248N 0.11 tolerated(0.5) benign(0.007) TCGA-OR-A5LD-01 17 75878204 75878204 G A FLJ45079 Missense_Mutation p.T90I 0.31 possibly_damaging(0.702) TCGA-OR-A5LD-01 18 268019 268021 TCT - THOC1 Missense_Mutation 0.33 TCGA-OR-A5LD-01 18 44013156 44013156 C T RNF165 Missense_Mutation p.A22V 0.22 deleterious_low_confidence(0.01) benign(0.005) TCGA-OR-A5LD-01 19 10259655 10259655 G A DNMT1 Silent p.D875D 0.20 TCGA-OR-A5LD-01 19 37619839 37619839 G A ZNF420 Missense_Mutation p.G649E 0.26 deleterious(0.03) benign(0.017) TCGA-OR-A5LD-01 19 41220217 41220217 C G ADCK4 Missense_Mutation p.R63P 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5LD-01 19 42753866 42753866 G A ERF Missense_Mutation p.P133L 0.21 deleterious(0.02) benign(0.124) TCGA-OR-A5LD-01 19 44680835 44680837 TCA - ZNF226 In_Frame_Del p.S474del 0.17 TCGA-OR-A5LD-01 19 45404573 45404573 G A TOMM40 Intron 0.18 TCGA-OR-A5LD-01 19 54172505 54172505 C T MIR512-2 RNA 0.18 TCGA-OR-A5LD-01 19 54783810 54783810 T C LILRB2 Missense_Mutation p.K64R 0.03 tolerated(0.07) benign(0.011) TCGA-OR-A5LD-01 19 9045734 9045734 G C MUC16 Missense_Mutation p.T11966S 0.33 benign(0.001) TCGA-OR-A5LD-01 1 151397436 151397437 TG - POGZ Frame_Shift_Del p.M394Vfs*9 0.09 TCGA-OR-A5LD-01 1 167023549 167023549 G A GPA33 3'UTR 0.35 TCGA-OR-A5LD-01 1 175293508 175293508 T A TNR Missense_Mutation p.E1314V 0.26 deleterious(0) probably_damaging(1) TCGA-OR-A5LD-01 1 186092320 186092320 C T HMCN1 Missense_Mutation p.S4156L 0.31 probably_damaging(0.993) TCGA-OR-A5LD-01 1 204923329 204923329 C T NFASC Nonsense_Mutation p.R77* 0.09 TCGA-OR-A5LD-01 1 207643213 207643213 A T CR2 Nonsense_Mutation p.K331* 0.13 TCGA-OR-A5LD-01 1 22140948 22140948 C A LDLRAD2 Nonsense_Mutation p.S48* 0.31 TCGA-OR-A5LD-01 1 27436203 27436203 G A SLC9A1 Silent p.L293L 0.09 TCGA-OR-A5LD-01 1 62713267 62713267 T A KANK4 Silent p.A920A 0.32 TCGA-OR-A5LD-01 1 87033202 87033202 T C CLCA4 Silent p.D350D 0.34 TCGA-OR-A5LD-01 20 3869889 3869889 C G PANK2 Missense_Mutation p.L48V 0.40 deleterious_low_confidence(0) benign(0.003) TCGA-OR-A5LD-01 20 9546653 9546653 C A PAK7 Nonsense_Mutation p.E457* 0.03 TCGA-OR-A5LD-01 22 18111428 18111428 C T ATP6V1E1 5'UTR 0.22 TCGA-OR-A5LD-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.30 TCGA-OR-A5LD-01 2 102624987 102624987 G T IL1R2 5'UTR 0.04 TCGA-OR-A5LD-01 2 121747796 121747796 G A GLI2 Missense_Mutation p.A1436T 0.20 tolerated(1) benign(0) TCGA-OR-A5LD-01 2 139429091 139429091 G A NXPH2 Missense_Mutation p.P66S 0.07 tolerated(0.69) benign(0.007) TCGA-OR-A5LD-01 2 174062872 174062872 G C MLTK Intron 0.11 TCGA-OR-A5LD-01 2 210557459 210557459 G T MAP2 Missense_Mutation p.G189C 0.22 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-OR-A5LD-01 2 231102964 231102964 A T SP140 Missense_Mutation p.T92S 0.12 tolerated(0.17) benign(0.145) TCGA-OR-A5LD-01 2 29296512 29296512 G C C2orf71 Missense_Mutation p.H206D 0.05 deleterious(0.03) benign(0.138) TCGA-OR-A5LD-01 2 61275821 61275821 C T PEX13 Silent p.A376A 0.18 TCGA-OR-A5LD-01 3 12977227 12977227 G C IQSEC1 Missense_Mutation p.P444R 0.22 deleterious_low_confidence(0.02) benign(0.003) TCGA-OR-A5LD-01 3 14220380 14220380 A C LSM3 Missense_Mutation p.Q7P 0.32 tolerated(0.07) benign(0.002) TCGA-OR-A5LD-01 3 154884739 154884739 C A MME Missense_Mutation p.S570Y 0.29 deleterious(0.01) probably_damaging(0.931) TCGA-OR-A5LD-01 3 45879475 45879475 C G LZTFL1 Missense_Mutation p.K24N 0.25 tolerated(0.12) benign(0.108) TCGA-OR-A5LD-01 3 46943321 46943321 C A PTH1R Silent p.A394A 0.26 TCGA-OR-A5LD-01 4 26997088 26997088 A G STIM2 Missense_Mutation p.N162S 0.27 tolerated(0.45) benign(0.002) TCGA-OR-A5LD-01 5 101748695 101748695 T G SLCO6A1 Missense_Mutation p.K542T 0.45 deleterious(0) possibly_damaging(0.863) TCGA-OR-A5LD-01 5 64966067 64966067 G C SGTB 3'UTR 0.38 TCGA-OR-A5LD-01 5 95297445 95297445 C T ELL2 5'UTR 0.30 TCGA-OR-A5LD-01 6 127899852 127899852 G A C6orf58 Missense_Mutation p.R108Q 0.32 tolerated(1) benign(0.014) TCGA-OR-A5LD-01 6 167436000 167436000 C G FGFR1OP Missense_Mutation p.S228C 0.23 deleterious(0.02) possibly_damaging(0.764) TCGA-OR-A5LD-01 6 3118992 3118992 C T BPHL Silent p.G6G 0.19 TCGA-OR-A5LD-01 6 41177449 41177449 A C TREML3P RNA 0.22 TCGA-OR-A5LD-01 6 65655687 65655687 G A EYS Nonsense_Mutation p.R794* 0.28 TCGA-OR-A5LD-01 6 86227557 86227557 T C SNX14 Missense_Mutation p.I729V 0.06 tolerated(0.82) benign(0.004) TCGA-OR-A5LD-01 7 18705997 18705997 A G HDAC9 Silent p.G543G 0.19 TCGA-OR-A5LD-01 7 44070447 44070447 G C RASA4CP RNA 0.20 TCGA-OR-A5LD-01 7 6502553 6502553 A C KDELR2 3'UTR 0.11 TCGA-OR-A5LD-01 7 72298710 72298710 G A TYW1B 5'UTR 0.08 TCGA-OR-A5LD-01 8 125464596 125464596 T G TRMT12 3'UTR 0.26 TCGA-OR-A5LD-01 8 135615137 135615137 G T ZFAT Nonsense_Mutation p.Y275* 0.04 TCGA-OR-A5LD-01 9 130492920 130492920 A G TTC16 Missense_Mutation p.T620A 0.36 tolerated(0.14) benign(0.015) TCGA-OR-A5LD-01 9 130493619 130493619 G A TTC16 Missense_Mutation p.G853R 0.09 tolerated(0.14) benign(0.03) TCGA-OR-A5LD-01 9 136339193 136339193 T C SLC2A6 Silent p.A315A 0.06 TCGA-OR-A5LD-01 X 92967221 92967221 C T FAM133A 3'UTR 0.14 TCGA-OR-A5LE-01 10 105779553 105779553 C T SLK Missense_Mutation p.T1065I 0.18 deleterious(0.01) possibly_damaging(0.574) TCGA-OR-A5LE-01 10 47087602 47087602 C A NPY4R Silent p.A273A 0.21 TCGA-OR-A5LE-01 10 70748621 70748621 G C KIAA1279 Missense_Mutation p.E11D 0.18 tolerated(0.34) benign(0.045) TCGA-OR-A5LE-01 10 89474830 89474831 CT - PAPSS2 Frame_Shift_Del p.L244Pfs*7 0.30 TCGA-OR-A5LE-01 11 46321507 46321507 C T CREB3L1 Missense_Mutation p.H42Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LE-01 11 67232053 67232053 C T TMEM134 3'UTR 0.39 TCGA-OR-A5LE-01 12 96104338 96104338 C T NTN4 Missense_Mutation p.R354H 0.49 tolerated(0.16) benign(0.032) TCGA-OR-A5LE-01 13 26436472 26436472 A G ATP8A2 Missense_Mutation p.T1037A 0.29 tolerated(0.17) benign(0.026) TCGA-OR-A5LE-01 13 28494294 28494294 T C PDX1 Missense_Mutation p.Y7H 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-OR-A5LE-01 17 7579716 7579716 G - TP53 Frame_Shift_Del p.P27Lfs*17 0.47 TCGA-OR-A5LE-01 18 12830976 12830976 A T PTPN2 Missense_Mutation p.V109D 0.19 deleterious(0) probably_damaging(0.979) TCGA-OR-A5LE-01 19 2191208 2191208 C T DOT1L Silent p.T154T 0.49 TCGA-OR-A5LE-01 1 197404443 197404443 T G CRB1 Missense_Mutation p.H1150Q 0.10 deleterious(0.03) benign(0.305) TCGA-OR-A5LE-01 1 236700878 236700878 G A LGALS8 Missense_Mutation p.A43T 0.45 deleterious(0) benign(0.435) TCGA-OR-A5LE-01 22 41791922 41791922 G C TEF Missense_Mutation p.K290N 0.06 deleterious(0) possibly_damaging(0.737) TCGA-OR-A5LE-01 22 50945405 50945405 C T LMF2 Missense_Mutation p.G52R 0.35 deleterious(0.03) possibly_damaging(0.707) TCGA-OR-A5LE-01 2 155555818 155555818 C T KCNJ3 Silent p.I177I 0.06 TCGA-OR-A5LE-01 2 159672358 159672358 T A DAPL1 3'UTR 0.05 TCGA-OR-A5LE-01 2 71337120 71337120 C A MCEE Missense_Mutation p.V171L 0.15 deleterious(0.02) benign(0.023) TCGA-OR-A5LE-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.48 deleterious(0) probably_damaging(0.939) TCGA-OR-A5LE-01 5 112103039 112103039 A G APC Missense_Mutation p.N125S 0.43 benign(0.016) TCGA-OR-A5LE-01 5 170632528 170632528 C T RANBP17 Missense_Mutation p.R715C 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-OR-A5LE-01 5 475724 475724 C G SLC9A3 Missense_Mutation p.E735Q 0.05 tolerated(0.36) benign(0.198) TCGA-OR-A5LE-01 5 50685485 50685485 C - ISL1 Frame_Shift_Del p.I163Sfs*26 0.50 TCGA-OR-A5LE-01 6 83830485 83830485 C G DOPEY1 Missense_Mutation p.I358M 0.21 tolerated(0.09) probably_damaging(0.979) TCGA-OR-A5LE-01 7 139164980 139164980 G A KLRG2 Silent p.Y257Y 0.30 TCGA-OR-A5LE-01 7 143042815 143042815 T C CLCN1 Missense_Mutation p.V711A 0.36 tolerated(0.11) possibly_damaging(0.849) TCGA-OR-A5LE-01 7 64527327 64527327 T C SNORA22 3'Flank 0.25 TCGA-OR-A5LE-01 X 50345785 50345785 A T SHROOM4 Missense_Mutation p.S1264T 0.16 tolerated(0.25) benign(0) TCGA-OR-A5LF-01 10 27322227 27322227 G A ANKRD26 Missense_Mutation p.T1245M 0.75 tolerated(0.16) possibly_damaging(0.668) TCGA-OR-A5LF-01 12 101005850 101005850 G C GAS2L3 Missense_Mutation p.A126P 0.15 deleterious(0) probably_damaging(0.951) TCGA-OR-A5LF-01 12 14578126 14578126 A G ATF7IP Missense_Mutation p.N426S 0.43 tolerated_low_confidence(0.16) possibly_damaging(0.486) TCGA-OR-A5LF-01 12 21624011 21624011 A C RECQL Silent p.A563A 0.43 TCGA-OR-A5LF-01 12 58217464 58217464 A G CTDSP2 Missense_Mutation p.L246P 0.40 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LF-01 12 966392 966392 C A WNK1 Nonsense_Mutation p.C459* 0.20 TCGA-OR-A5LF-01 15 70349954 70349954 C T TLE3 Silent p.A368A 0.76 TCGA-OR-A5LF-01 16 27523174 27523190 CGTTTAAATTCCTTCAG - GTF3C1 Frame_Shift_Del p.L336Efs*2 0.14 TCGA-OR-A5LF-01 16 31213958 31213958 C T C16orf98 Missense_Mutation p.L62F 0.20 unknown(0) TCGA-OR-A5LF-01 16 3544745 3544745 C T C16orf90 Missense_Mutation p.R60H 0.42 deleterious_low_confidence(0.04) probably_damaging(0.923) TCGA-OR-A5LF-01 17 29661949 29661949 A - NF1 Frame_Shift_Del p.R1970Efs*9 0.41 TCGA-OR-A5LF-01 19 54393237 54393237 C - PRKCG Frame_Shift_Del p.R166Gfs*10 0.34 TCGA-OR-A5LF-01 1 152278216 152278216 C T FLG Missense_Mutation p.R3049H 0.23 unknown(0) TCGA-OR-A5LF-01 1 31819587 31819587 G T ZCCHC17 Missense_Mutation p.G140C 0.33 deleterious(0) probably_damaging(1) TCGA-OR-A5LF-01 22 23165624 23165624 C A IGLV2-8 Silent p.P65P 0.23 TCGA-OR-A5LF-01 2 31572920 31572920 G T XDH Missense_Mutation p.T934N 0.32 tolerated(0.08) possibly_damaging(0.776) TCGA-OR-A5LF-01 3 113528258 113528258 G A ATP6V1A Missense_Mutation p.R613H 0.03 deleterious(0.03) benign(0.052) TCGA-OR-A5LF-01 3 186793513 186793513 T C ST6GAL1 Silent p.H381H 0.33 TCGA-OR-A5LF-01 4 68928345 68928345 C T TMPRSS11F Intron 0.40 TCGA-OR-A5LF-01 5 137090001 137090001 C T HNRNPA0 5'UTR 0.23 TCGA-OR-A5LF-01 6 26204877 26204877 C T HIST1H4E Missense_Mutation p.S2F 0.38 deleterious_low_confidence(0) benign(0.184) TCGA-OR-A5LF-01 6 72945399 72945399 C G RIMS1 Missense_Mutation p.P609A 0.29 deleterious(0) possibly_damaging(0.553) TCGA-OR-A5LF-01 6 72945409 72945409 C G RIMS1 Nonsense_Mutation p.S612* 0.29 TCGA-OR-A5LF-01 7 44156093 44156093 T C POLD2 Missense_Mutation p.K266R 0.17 tolerated(0.2) benign(0.253) TCGA-OR-A5LF-01 8 37554967 37554967 C T ZNF703 Missense_Mutation p.S183F 0.30 deleterious(0.02) possibly_damaging(0.485) TCGA-OR-A5LF-01 9 5969127 5969127 G C KIAA2026 Silent p.T368T 0.31 TCGA-OR-A5LF-01 X 152031231 152031231 T C NSDHL Missense_Mutation p.I169T 0.36 tolerated(0.09) possibly_damaging(0.507) TCGA-OR-A5LF-01 X 53440047 53440047 A G SMC1A Silent p.A219A 0.15 TCGA-OR-A5LF-01 X 71417357 71417357 T C PIN4 Missense_Mutation p.M151T 0.40 deleterious(0) probably_damaging(0.964) TCGA-OR-A5LG-01 10 104590691 104590692 - AGCTTACTGACGGTGAG CYP17A1 Nonsense_Mutation p.Y432Sfs*5 0.09 TCGA-OR-A5LG-01 10 34601205 34601205 T G PARD3 Intron 0.46 TCGA-OR-A5LG-01 10 88935691 88935691 C T FAM35A Intron 0.40 TCGA-OR-A5LG-01 11 72308628 72308628 T C PDE2A Missense_Mutation p.N120S 0.35 tolerated_low_confidence(0.5) benign(0.001) TCGA-OR-A5LG-01 12 2058258 2058258 G C DCP1B Silent p.L589L 0.79 TCGA-OR-A5LG-01 12 49999115 49999115 C G FAM186B Intron 0.35 TCGA-OR-A5LG-01 12 63544384 63544384 C T AVPR1A Missense_Mutation p.R78Q 0.52 tolerated(0.25) benign(0.168) TCGA-OR-A5LG-01 14 39650733 39650733 C A PNN Missense_Mutation p.S607Y 0.48 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5LG-01 14 65241872 65241872 G T SPTB Missense_Mutation p.L1605I 0.09 deleterious(0) possibly_damaging(0.488) TCGA-OR-A5LG-01 14 73960081 73960081 A G HEATR4 Intron 0.50 TCGA-OR-A5LG-01 15 52689550 52689550 C A MYO5A Missense_Mutation p.K389N 0.38 deleterious(0) probably_damaging(1) TCGA-OR-A5LG-01 15 74865529 74865529 C T ARID3B Silent p.V227V 0.46 TCGA-OR-A5LG-01 16 71012910 71012910 G T HYDIN Silent p.A1515A 0.18 TCGA-OR-A5LG-01 19 3976662 3976662 C G EEF2 Missense_Mutation p.D823H 0.45 deleterious(0) probably_damaging(0.949) TCGA-OR-A5LG-01 19 9720875 9720875 G T ZNF561 3'UTR 0.15 TCGA-OR-A5LG-01 1 223949944 223949944 G C CAPN2 Missense_Mutation p.L541F 0.48 tolerated(0.09) possibly_damaging(0.858) TCGA-OR-A5LG-01 20 1515083 1515083 C A SIRPD Missense_Mutation p.L194F 0.37 unknown(0) TCGA-OR-A5LG-01 20 20123574 20123574 T C C20orf26 Silent p.D311D 0.39 TCGA-OR-A5LG-01 20 55012236 55012236 C T CASS4 Missense_Mutation p.A18V 0.44 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LG-01 22 23627302 23627302 C G BCR Missense_Mutation p.P774A 0.49 tolerated(0.09) probably_damaging(0.945) TCGA-OR-A5LG-01 2 128394466 128394466 G T MYO7B Missense_Mutation p.R2076L 0.05 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LG-01 2 167263141 167263141 A G SCN7A Missense_Mutation p.M1333T 0.03 tolerated(0.19) benign(0.124) TCGA-OR-A5LG-01 3 122003707 122003707 G A CASR Missense_Mutation p.G979D 0.42 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-OR-A5LG-01 5 140537262 140537262 G T PCDHB17 Silent p.S562S 0.36 TCGA-OR-A5LG-01 7 41729744 41729744 T A INHBA Missense_Mutation p.K262M 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-OR-A5LG-01 8 22526658 22526658 A G BIN3 5'Flank 0.75 TCGA-OR-A5LG-01 8 27472177 27472187 AGCGGCACCCT - CLU 5'UTR 0.11 TCGA-OR-A5LG-01 9 113192698 113192698 C T SVEP1 Missense_Mutation p.E1796K 0.40 possibly_damaging(0.845) TCGA-OR-A5LG-01 9 32630736 32630736 C T TAF1L Silent p.E1614E 0.43 TCGA-OR-A5LG-01 9 40705751 40705751 C T SPATA31A3 Silent p.V1136V 0.63 TCGA-OR-A5LG-01 X 101971586 101971586 G T GPRASP2 Nonsense_Mutation p.E597* 0.92 TCGA-OR-A5LG-01 X 48433568 48433568 C T RBM3 5'UTR 0.97 TCGA-OR-A5LH-01 10 125516731 125516731 G - CPXM2 Frame_Shift_Del p.Q639Rfs*10 0.42 TCGA-OR-A5LH-01 11 57175299 57175299 C T SLC43A3 Missense_Mutation p.R481H 0.04 tolerated(0.08) benign(0.16) TCGA-OR-A5LH-01 12 34175538 34175538 G A ALG10 Missense_Mutation p.A2T 0.37 deleterious(0.04) benign(0.276) TCGA-OR-A5LH-01 15 79339163 79339163 C T RASGRF1 Missense_Mutation p.R268H 0.59 deleterious(0.04) benign(0.348) TCGA-OR-A5LH-01 16 67400961 67400961 C T LRRC36 Missense_Mutation p.P266S 0.70 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LH-01 17 66526554 66526554 C - PRKAR1A Frame_Shift_Del p.Q371Sfs*70 0.39 TCGA-OR-A5LH-01 20 35838497 35838497 T G RPN2 Silent p.V305V 0.19 TCGA-OR-A5LH-01 3 101520307 101520307 T A NXPE3 Missense_Mutation p.F108I 0.81 deleterious(0) probably_damaging(0.991) TCGA-OR-A5LH-01 7 102995342 102995342 A C PSMC2 Missense_Mutation p.K46Q 0.34 tolerated(0.06) probably_damaging(0.997) TCGA-OR-A5LH-01 X 18938279 18938279 A G PHKA2 Missense_Mutation p.F612L 0.39 deleterious(0.01) benign(0.403) TCGA-OR-A5LI-01 10 101157345 101157345 C T GOT1 Missense_Mutation p.V401M 0.03 deleterious(0.04) probably_damaging(0.97) TCGA-OR-A5LI-01 10 102740027 102740027 G A SEMA4G Missense_Mutation p.R426H 0.20 tolerated(0.63) benign(0.015) TCGA-OR-A5LI-01 10 18122634 18122634 G A MRC1 Missense_Mutation p.G215D 0.33 tolerated(1) benign(0.12) TCGA-OR-A5LI-01 10 697297 697297 C T PRR26 3'UTR 0.40 TCGA-OR-A5LI-01 10 93711281 93711281 G C BTAF1 Missense_Mutation p.L174F 0.30 deleterious(0.01) possibly_damaging(0.738) TCGA-OR-A5LI-01 11 44069582 44069582 G A ACCSL 5'UTR 0.15 TCGA-OR-A5LI-01 11 55658957 55658957 C G TRIM51 Missense_Mutation p.P403R 0.13 deleterious(0.03) possibly_damaging(0.491) TCGA-OR-A5LI-01 11 57076797 57076797 C T TNKS1BP1 Missense_Mutation p.D1130N 0.25 deleterious(0.04) benign(0.288) TCGA-OR-A5LI-01 11 7686474 7686474 G C CYB5R2 3'UTR 0.29 TCGA-OR-A5LI-01 12 112893833 112893833 A G PTPN11 Missense_Mutation p.D241G 0.20 tolerated(0.44) benign(0.145) TCGA-OR-A5LI-01 12 57559628 57559628 C T LRP1 Silent p.G857G 0.21 TCGA-OR-A5LI-01 12 81769579 81769579 C T PPFIA2 Missense_Mutation p.R376Q 0.34 deleterious(0) possibly_damaging(0.743) TCGA-OR-A5LI-01 13 115027384 115027384 C G CDC16 Missense_Mutation p.P446R 0.21 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LI-01 14 53619554 53619554 T G DDHD1 Missense_Mutation p.N88T 0.21 tolerated_low_confidence(0.46) benign(0.009) TCGA-OR-A5LI-01 14 65009483 65009483 A G HSPA2 Missense_Mutation p.D639G 0.22 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-OR-A5LI-01 14 79434571 79434571 C T NRXN3 Silent p.L635L 0.20 TCGA-OR-A5LI-01 15 69721517 69721517 G A KIF23 Missense_Mutation p.R346Q 0.24 deleterious(0) probably_damaging(1) TCGA-OR-A5LI-01 16 1250295 1250295 G A CACNA1H Silent p.T281T 0.03 TCGA-OR-A5LI-01 16 1494462 1494462 C G CCDC154 5'UTR 0.16 TCGA-OR-A5LI-01 16 3713007 3713007 C A TRAP1 Intron 0.29 TCGA-OR-A5LI-01 17 37010038 37010038 C T RPL23 5'UTR 0.29 TCGA-OR-A5LI-01 17 38289309 38289309 T C MSL1 Silent p.S238S 0.19 TCGA-OR-A5LI-01 17 40322162 40322162 C T KCNH4 Silent p.A451A 0.29 TCGA-OR-A5LI-01 17 41008576 41008576 G A AOC3 3'UTR 0.27 TCGA-OR-A5LI-01 17 55123104 55123104 C T RNF126P1 RNA 0.19 TCGA-OR-A5LI-01 17 7495630 7495630 C T FXR2 Missense_Mutation p.R623H 0.08 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-OR-A5LI-01 18 28651720 28651720 G T DSC2 Missense_Mutation p.S659Y 0.23 tolerated(0.09) benign(0.078) TCGA-OR-A5LI-01 18 44555127 44555127 G A TCEB3C Missense_Mutation p.L363F 0.03 deleterious(0) probably_damaging(0.993) TCGA-OR-A5LI-01 18 6093437 6093437 T - L3MBTL4 Frame_Shift_Del p.E430Dfs*15 0.26 TCGA-OR-A5LI-01 18 7023307 7023307 C T LAMA1 Missense_Mutation p.G853S 0.21 deleterious(0.05) possibly_damaging(0.775) TCGA-OR-A5LI-01 19 1127619 1127619 G A SBNO2 Missense_Mutation p.P142L 0.34 deleterious_low_confidence(0.01) benign(0.097) TCGA-OR-A5LI-01 19 19764811 19764811 G A ATP13A1 Silent p.A652A 0.28 TCGA-OR-A5LI-01 19 36342537 36342537 C T NPHS1 Silent p.R32R 0.20 TCGA-OR-A5LI-01 19 36494356 36494364 GAGGAGGAA - SYNE4 In_Frame_Del p.F364_L366del 0.11 TCGA-OR-A5LI-01 19 54695770 54695770 G A TSEN34 Missense_Mutation p.D148N 0.08 tolerated(0.67) benign(0) TCGA-OR-A5LI-01 19 7594484 7594484 C T MCOLN1 Silent p.I415I 0.41 TCGA-OR-A5LI-01 1 114483599 114483599 G T HIPK1 Silent p.R198R 0.07 TCGA-OR-A5LI-01 1 158058203 158058203 C T KIRREL Missense_Mutation p.P335S 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5LI-01 1 16384888 16384888 G A FAM131C 3'UTR 0.46 TCGA-OR-A5LI-01 1 169697005 169697005 A G SELE Missense_Mutation p.I448T 0.25 tolerated(1) benign(0.001) TCGA-OR-A5LI-01 1 237060314 237060314 T A MTR Missense_Mutation p.L1203I 0.10 deleterious(0.05) probably_damaging(1) TCGA-OR-A5LI-01 1 57756703 57756703 C G DAB1 5'UTR 0.18 TCGA-OR-A5LI-01 1 75622742 75622742 G A LHX8 Silent p.A325A 0.26 TCGA-OR-A5LI-01 20 23065458 23065458 A C CD93 Missense_Mutation p.W458G 0.20 deleterious(0.01) benign(0.295) TCGA-OR-A5LI-01 20 62724242 62724242 C T OPRL1 Missense_Mutation p.L57F 0.18 deleterious(0.01) benign(0.319) TCGA-OR-A5LI-01 21 37635944 37635944 C T DOPEY2 Missense_Mutation p.L1806F 0.06 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LI-01 22 29951837 29951837 C A NIPSNAP1 3'UTR 0.45 TCGA-OR-A5LI-01 22 49042499 49042499 G A FAM19A5 Missense_Mutation p.C68Y 0.35 deleterious(0) probably_damaging(1) TCGA-OR-A5LI-01 2 113079374 113079374 T C ZC3H6 Missense_Mutation p.Y340H 0.27 deleterious(0) probably_damaging(0.914) TCGA-OR-A5LI-01 2 129025587 129025587 C T HS6ST1 3'UTR 0.48 TCGA-OR-A5LI-01 2 129025588 129025588 A G HS6ST1 3'UTR 0.48 TCGA-OR-A5LI-01 2 136499451 136499451 G C UBXN4 5'UTR 0.21 TCGA-OR-A5LI-01 2 169853195 169853195 T C ABCB11 Missense_Mutation p.S143G 0.23 tolerated(0.13) benign(0) TCGA-OR-A5LI-01 2 20647308 20647308 G C RHOB Missense_Mutation p.D28H 0.24 deleterious(0.04) possibly_damaging(0.781) TCGA-OR-A5LI-01 2 216299458 216299458 C T FN1 Missense_Mutation p.G80R 0.14 deleterious(0) probably_damaging(1) TCGA-OR-A5LI-01 2 228883336 228883336 C T SPHKAP Missense_Mutation p.R745K 0.21 tolerated(0.74) benign(0.003) TCGA-OR-A5LI-01 2 38216713 38216713 A T RMDN2 Missense_Mutation p.E452V 0.20 deleterious(0) probably_damaging(0.994) TCGA-OR-A5LI-01 2 74710066 74710066 C T CCDC142 5'UTR 0.48 TCGA-OR-A5LI-01 3 126739102 126739102 G A PLXNA1 Missense_Mutation p.G1318D 0.30 deleterious(0) probably_damaging(1) TCGA-OR-A5LI-01 3 169654233 169654233 C A SAMD7 Nonsense_Mutation p.S383* 0.26 TCGA-OR-A5LI-01 3 184072696 184072696 G A CLCN2 Silent p.V464V 0.26 TCGA-OR-A5LI-01 3 184072697 184072697 A C CLCN2 Missense_Mutation p.V464G 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-OR-A5LI-01 4 123201033 123201033 A G KIAA1109 Missense_Mutation p.I2899V 0.34 benign(0.012) TCGA-OR-A5LI-01 4 139966424 139966424 G A CCRN4L Nonsense_Mutation p.W364* 0.29 TCGA-OR-A5LI-01 4 144469148 144469148 A G SMARCA5 Missense_Mutation p.Y947C 0.18 deleterious(0) probably_damaging(0.996) TCGA-OR-A5LI-01 4 176733429 176733429 A G GPM6A Intron 0.38 TCGA-OR-A5LI-01 4 74313330 74313330 G A AFP Missense_Mutation p.R332K 0.27 tolerated(0.96) benign(0.022) TCGA-OR-A5LI-01 4 76926002 76926002 G C CXCL9 Nonsense_Mutation p.S79* 0.23 TCGA-OR-A5LI-01 5 14758635 14758635 C T ANKH Missense_Mutation p.R129K 0.20 tolerated(0.17) probably_damaging(0.992) TCGA-OR-A5LI-01 5 177171892 177171892 C T FAM153A Missense_Mutation p.M35I 0.09 tolerated_low_confidence(0.07) benign(0.043) TCGA-OR-A5LI-01 5 43486917 43486917 G - C5orf34 3'UTR 0.16 TCGA-OR-A5LI-01 5 70819810 70819810 T G BDP1 Missense_Mutation p.L1811R 0.24 deleterious(0.02) probably_damaging(0.984) TCGA-OR-A5LI-01 5 79855316 79855316 C G ANKRD34B Missense_Mutation p.D175H 0.34 deleterious(0.01) possibly_damaging(0.503) TCGA-OR-A5LI-01 6 133047878 133047878 G C VNN3 Intron 0.21 TCGA-OR-A5LI-01 6 134494667 134494669 GAC - SGK1 In_Frame_Del p.S184del 0.17 TCGA-OR-A5LI-01 6 30917535 30917535 G A DPCR1 Missense_Mutation p.E432K 0.26 tolerated(0.42) unknown(0) TCGA-OR-A5LI-01 6 76018397 76018397 G C FILIP1 3'UTR 0.25 TCGA-OR-A5LI-01 7 148951008 148951008 G A ZNF212 Silent p.Q330Q 0.25 TCGA-OR-A5LI-01 7 72657616 72657616 G T GTF2IRD2P1 RNA 0.04 TCGA-OR-A5LI-01 8 28309857 28309857 G A FBXO16 Missense_Mutation p.A215V 0.19 tolerated(0.07) benign(0.044) TCGA-OR-A5LI-01 8 93017255 93017255 C G RUNX1T1 Intron 0.33 TCGA-OR-A5LI-01 9 139360883 139360883 C T SEC16A Missense_Mutation p.D1321N 0.23 deleterious(0.03) probably_damaging(0.951) TCGA-OR-A5LI-01 9 140115666 140115666 C T RNF208 5'UTR 0.19 TCGA-OR-A5LI-01 X 102471120 102471120 C T BEX4 Silent p.N13N 0.45 TCGA-OR-A5LI-01 X 11204435 11204435 A C ARHGAP6 Missense_Mutation p.D398E 0.41 deleterious(0.04) benign(0.336) TCGA-OR-A5LI-01 X 133675462 133675462 G C MIR542 RNA 0.58 TCGA-OR-A5LI-01 X 135432457 135432457 A G GPR112 Missense_Mutation p.T2198A 0.46 tolerated(0.08) benign(0.081) TCGA-OR-A5LJ-01 10 101124242 101124242 C T CNNM1 Silent p.G699G 0.45 TCGA-OR-A5LJ-01 10 103371420 103371420 G A FBXW4 Missense_Mutation p.R362W 0.38 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 10 103716388 103716388 G A C10orf76 Silent p.R557R 0.16 TCGA-OR-A5LJ-01 10 105803593 105803593 G A COL17A1 Silent p.I808I 0.44 TCGA-OR-A5LJ-01 10 112838325 112838327 GGC - ADRA2A In_Frame_Del p.G195del 0.17 TCGA-OR-A5LJ-01 10 115806500 115806500 T - ADRB1 3'UTR 0.45 TCGA-OR-A5LJ-01 10 116049187 116049187 C T VWA2 Silent p.H687H 0.14 TCGA-OR-A5LJ-01 10 121691801 121691803 AAG - SEC23IP In_Frame_Del p.E914del 0.28 TCGA-OR-A5LJ-01 10 23729556 23729556 G C OTUD1 Silent p.V390V 0.45 TCGA-OR-A5LJ-01 10 24873649 24873649 G A ARHGAP21 Missense_Mutation p.R1857C 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-OR-A5LJ-01 10 30316849 30316852 TGTT - KIAA1462 Frame_Shift_Del p.K742Rfs*8 0.42 TCGA-OR-A5LJ-01 10 48371669 48371669 G A ZNF488 3'UTR 0.47 TCGA-OR-A5LJ-01 10 50691492 50691492 A C ERCC6 Missense_Mutation p.M631R 0.47 tolerated(0.21) benign(0.008) TCGA-OR-A5LJ-01 10 52103641 52103641 G A SGMS1 Silent p.N78N 0.22 TCGA-OR-A5LJ-01 10 5498113 5498113 C T NET1 Missense_Mutation p.R421W 0.45 deleterious(0) probably_damaging(0.994) TCGA-OR-A5LJ-01 10 55581863 55581863 G T PCDH15 Missense_Mutation p.P1877T 0.55 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5LJ-01 10 59956132 59956132 G A IPMK Missense_Mutation p.A319V 0.41 tolerated(0.09) benign(0.04) TCGA-OR-A5LJ-01 10 70105818 70105820 TTT - RUFY2 In_Frame_Del p.K576del 0.37 TCGA-OR-A5LJ-01 10 70426853 70426853 C T TET1 Missense_Mutation p.R1505C 0.44 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 10 73560424 73560424 G A CDH23 Missense_Mutation p.R225Q 0.39 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LJ-01 10 75414029 75414029 G A SYNPO2L Missense_Mutation p.R39W 0.37 deleterious(0) probably_damaging(0.95) TCGA-OR-A5LJ-01 10 79603319 79603319 C T DLG5 Missense_Mutation p.R337H 0.50 deleterious(0) probably_damaging(0.994) TCGA-OR-A5LJ-01 10 8007680 8007682 AGA - TAF3 In_Frame_Del p.K737del 0.41 TCGA-OR-A5LJ-01 10 87675969 87675969 C T GRID1 Missense_Mutation p.D252N 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5LJ-01 10 87898579 87898579 G A GRID1 Silent p.N241N 0.47 TCGA-OR-A5LJ-01 10 96353307 96353307 C T HELLS Nonsense_Mutation p.R675* 0.48 TCGA-OR-A5LJ-01 10 99376052 99376052 C T MORN4 Missense_Mutation p.A137T 0.48 tolerated(0.09) possibly_damaging(0.499) TCGA-OR-A5LJ-01 10 99426276 99426276 C G PI4K2A Missense_Mutation p.S359W 0.27 deleterious(0) probably_damaging(0.987) TCGA-OR-A5LJ-01 11 108138056 108138056 C T ATM Silent p.S875S 0.20 TCGA-OR-A5LJ-01 11 111865744 111865744 C T DIXDC1 Missense_Mutation p.A479V 0.06 tolerated(1) benign(0) TCGA-OR-A5LJ-01 11 111953573 111953576 AAAG - C11orf57 Frame_Shift_Del p.K254Efs*9 0.85 TCGA-OR-A5LJ-01 11 111956053 111956053 C T TIMM8B Missense_Mutation p.R88Q 0.83 deleterious(0.01) possibly_damaging(0.845) TCGA-OR-A5LJ-01 11 117303148 117303148 G A DSCAML1 Missense_Mutation p.T1760I 0.05 deleterious(0.03) possibly_damaging(0.66) TCGA-OR-A5LJ-01 11 118210583 118210583 C T CD3D Missense_Mutation p.A105T 0.83 tolerated(0.1) benign(0.141) TCGA-OR-A5LJ-01 11 12923632 12923632 A - TEAD1 Frame_Shift_Del p.N283Mfs*6 0.13 TCGA-OR-A5LJ-01 11 1651190 1651190 C T KRTAP5-5 Silent p.S40S 0.84 TCGA-OR-A5LJ-01 11 1756340 1756340 C T IFITM10 3'UTR 1.00 TCGA-OR-A5LJ-01 11 19955447 19955447 A G NAV2 Missense_Mutation p.K576E 0.82 deleterious(0) probably_damaging(0.993) TCGA-OR-A5LJ-01 11 57077118 57077119 CT - TNKS1BP1 Frame_Shift_Del p.G1023Ifs*8 0.68 TCGA-OR-A5LJ-01 11 5969261 5969261 G T OR56A3 Missense_Mutation p.V229L 0.78 deleterious(0) possibly_damaging(0.782) TCGA-OR-A5LJ-01 11 6232915 6232915 G A FAM160A2 Missense_Mutation p.R928C 0.16 tolerated(0.06) probably_damaging(0.939) TCGA-OR-A5LJ-01 11 62850786 62850786 C T SLC22A24 Missense_Mutation p.R405H 0.84 deleterious(0.03) possibly_damaging(0.696) TCGA-OR-A5LJ-01 11 63276041 63276041 C T LGALS12 Missense_Mutation p.T51M 0.78 tolerated(0.06) benign(0.143) TCGA-OR-A5LJ-01 11 64572092 64572093 - G MEN1 Frame_Shift_Ins p.R521Pfs*15 0.50 TCGA-OR-A5LJ-01 11 65319519 65319519 G A LTBP3 Silent p.D485D 0.83 TCGA-OR-A5LJ-01 11 66241408 66241408 G A PELI3 Intron 0.86 TCGA-OR-A5LJ-01 11 66838933 66838933 G A RHOD Missense_Mutation p.A165T 0.10 deleterious(0.01) probably_damaging(0.98) TCGA-OR-A5LJ-01 11 68707223 68707223 G A IGHMBP2 3'UTR 0.16 TCGA-OR-A5LJ-01 11 77885257 77885257 G T KCTD21 Missense_Mutation p.T115K 0.83 tolerated(0.4) benign(0.01) TCGA-OR-A5LJ-01 11 800997 800997 G A PIDD Missense_Mutation p.T585I 0.07 deleterious(0) probably_damaging(0.949) TCGA-OR-A5LJ-01 11 92616519 92616519 C T FAT3 Silent p.C4299C 0.80 TCGA-OR-A5LJ-01 12 102158675 102158675 G A GNPTAB Missense_Mutation p.R674C 0.44 deleterious(0) probably_damaging(0.983) TCGA-OR-A5LJ-01 12 110207130 110207130 C T FAM222A 3'UTR 0.55 TCGA-OR-A5LJ-01 12 110784062 110784064 CTC - ATP2A2 In_Frame_Del p.S973del 0.40 TCGA-OR-A5LJ-01 12 110788030 110788030 A G ATP2A2 3'Flank 0.09 TCGA-OR-A5LJ-01 12 121622497 121622497 C A P2RX7 Silent p.S560S 0.32 TCGA-OR-A5LJ-01 12 123089580 123089580 G A KNTC1 Missense_Mutation p.E1778K 0.52 deleterious(0.01) probably_damaging(0.993) TCGA-OR-A5LJ-01 12 123466588 123466588 G A ARL6IP4 Missense_Mutation p.R308H 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 12 130912861 130912861 C T RIMBP2 Missense_Mutation p.E742K 0.93 deleterious(0.01) possibly_damaging(0.696) TCGA-OR-A5LJ-01 12 13229066 13229066 C T KIAA1467 Missense_Mutation p.T544M 0.46 tolerated(0.12) benign(0.111) TCGA-OR-A5LJ-01 12 132504663 132504663 G A EP400 Silent p.P1449P 0.76 TCGA-OR-A5LJ-01 12 148454 148454 A G AC026369.1 3'Flank 0.32 TCGA-OR-A5LJ-01 12 31882105 31882105 A T AMN1 5'UTR 0.43 TCGA-OR-A5LJ-01 12 49086936 49086936 A G CCNT1 Silent p.Y687Y 0.36 TCGA-OR-A5LJ-01 12 49170332 49170332 G A ADCY6 Missense_Mutation p.R472C 0.37 deleterious(0) probably_damaging(0.996) TCGA-OR-A5LJ-01 12 49318027 49318028 CT - FKBP11 Frame_Shift_Del p.L100Sfs*37 0.31 TCGA-OR-A5LJ-01 12 51457707 51457707 A G CSRNP2 Missense_Mutation p.L485S 0.04 tolerated_low_confidence(0.15) benign(0.175) TCGA-OR-A5LJ-01 12 52946699 52946699 G A KRT71 Missense_Mutation p.R55W 0.10 deleterious(0.03) benign(0.052) TCGA-OR-A5LJ-01 12 53170942 53170942 C T KRT76 Missense_Mutation p.G45D 0.45 deleterious(0) unknown(0) TCGA-OR-A5LJ-01 12 53497419 53497419 C T SOAT2 Missense_Mutation p.R20W 0.08 deleterious(0.04) benign(0.28) TCGA-OR-A5LJ-01 12 53876621 53876621 G A MAP3K12 Missense_Mutation p.R656W 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.582) TCGA-OR-A5LJ-01 12 55421127 55421128 - C NEUROD4 Frame_Shift_Ins p.R304Pfs*3 0.09 TCGA-OR-A5LJ-01 12 57113563 57113564 AG - NACA Frame_Shift_Del p.L584Ffs*3 0.26 TCGA-OR-A5LJ-01 12 57409529 57409530 CT - TAC3 Frame_Shift_Del p.S18Lfs*6 0.32 TCGA-OR-A5LJ-01 12 57963112 57963112 C T KIF5A Missense_Mutation p.T298M 0.45 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 12 60173233 60173233 A G SLC16A7 Missense_Mutation p.K404E 0.10 tolerated(0.22) benign(0.013) TCGA-OR-A5LJ-01 12 6230433 6230433 C T VWF Missense_Mutation p.V43I 0.49 tolerated(1) benign(0.002) TCGA-OR-A5LJ-01 12 6424203 6424203 G A PLEKHG6 Silent p.R109R 0.44 TCGA-OR-A5LJ-01 12 77222254 77222255 - T ZDHHC17 Frame_Shift_Ins p.W377Lfs*5 0.26 TCGA-OR-A5LJ-01 12 78400316 78400316 G A NAV3 Missense_Mutation p.R333H 0.03 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 12 80328745 80328745 G - PPP1R12A 5'UTR 0.32 TCGA-OR-A5LJ-01 12 88508192 88508210 CTTACATTAACTAGTCTTT - CEP290 Splice_Site p.X680_splice 0.22 TCGA-OR-A5LJ-01 13 21752085 21752085 G A MRP63 3'UTR 0.95 TCGA-OR-A5LJ-01 13 25262636 25262636 C T ATP12A Silent p.S136S 0.85 TCGA-OR-A5LJ-01 13 25744555 25744555 G A AMER2 Silent p.P401P 0.81 TCGA-OR-A5LJ-01 13 39264775 39264775 G T FREM2 Silent p.L1098L 0.25 TCGA-OR-A5LJ-01 13 39952603 39952603 C T LHFP Missense_Mutation p.R149Q 0.75 tolerated(0.59) benign(0.009) TCGA-OR-A5LJ-01 13 45965310 45965310 G A SLC25A30 3'Flank 0.03 TCGA-OR-A5LJ-01 13 47316004 47316004 C T LRCH1 3'UTR 0.82 TCGA-OR-A5LJ-01 13 78211275 78211275 A T SCEL Missense_Mutation p.Y595F 0.17 deleterious(0.01) probably_damaging(0.936) TCGA-OR-A5LJ-01 13 95830011 95830011 G A ABCC4 Silent p.D559D 0.27 TCGA-OR-A5LJ-01 14 104481118 104481118 T C TDRD9 Silent p.V721V 0.83 TCGA-OR-A5LJ-01 14 105269523 105269523 G A ZBTB42 3'UTR 0.07 TCGA-OR-A5LJ-01 14 106091544 106091544 C - IGHG4 Frame_Shift_Del p.G117Dfs*16 0.43 TCGA-OR-A5LJ-01 14 107095164 107095164 C G IGHV4-61 Missense_Mutation p.V106L 0.18 tolerated(0.32) benign(0.047) TCGA-OR-A5LJ-01 14 20216029 20216029 C T OR4Q3 Missense_Mutation p.A148V 0.08 tolerated(0.18) benign(0.021) TCGA-OR-A5LJ-01 14 20345046 20345046 C T OR4K2 Missense_Mutation p.A207V 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-OR-A5LJ-01 14 45675328 45675328 T A MIS18BP1 Missense_Mutation p.K1066N 0.80 deleterious(0.02) benign(0.278) TCGA-OR-A5LJ-01 14 74193665 74193665 C T ELMSAN1 Missense_Mutation p.V725M 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-OR-A5LJ-01 14 74711911 74711911 T G VSX2 Missense_Mutation p.F167V 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 14 90450919 90450919 C T TDP1 Missense_Mutation p.S315L 0.79 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 15 102358851 102358851 C T OR4F15 Silent p.I154I 0.27 TCGA-OR-A5LJ-01 15 102496092 102496092 T C FAM138E RNA 0.06 TCGA-OR-A5LJ-01 15 33358991 33358991 C T FMN1 Silent p.S365S 0.14 TCGA-OR-A5LJ-01 15 41106184 41106185 - C ZFYVE19 Frame_Shift_Ins p.W420Lfs*7 0.11 TCGA-OR-A5LJ-01 15 42137956 42137956 G A PLA2G4B Missense_Mutation p.R724H 0.76 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5LJ-01 15 52011690 52011690 C T SCG3 Silent p.A458A 0.05 TCGA-OR-A5LJ-01 15 65995235 65995235 C T DENND4A Silent p.L733L 0.90 TCGA-OR-A5LJ-01 15 74487566 74487566 G A STRA6 Intron 0.88 TCGA-OR-A5LJ-01 15 76225297 76225297 G A FBXO22 Missense_Mutation p.G356S 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-OR-A5LJ-01 15 83679055 83679055 C T C15orf40 Missense_Mutation p.D58N 0.84 tolerated(0.06) possibly_damaging(0.749) TCGA-OR-A5LJ-01 15 85360157 85360157 C T ALPK3 Missense_Mutation p.P27L 0.10 deleterious_low_confidence(0) benign(0.021) TCGA-OR-A5LJ-01 15 91475059 91475060 AG - HDDC3 Frame_Shift_Del p.L95Afs*17 0.19 TCGA-OR-A5LJ-01 16 11772102 11772102 C T SNN 3'UTR 0.82 TCGA-OR-A5LJ-01 16 14041727 14041727 G A ERCC4 Silent p.L758L 0.09 TCGA-OR-A5LJ-01 16 16184382 16184382 G A ABCC1 Missense_Mutation p.A861T 0.86 deleterious(0.01) benign(0.064) TCGA-OR-A5LJ-01 16 23415033 23415033 C T COG7 Silent p.L595L 0.10 TCGA-OR-A5LJ-01 16 2854956 2854956 G C PRSS41 RNA 0.76 TCGA-OR-A5LJ-01 16 29997670 29997670 C T TAOK2 Missense_Mutation p.R693W 0.07 deleterious(0) probably_damaging(0.986) TCGA-OR-A5LJ-01 16 3024609 3024609 G A PKMYT1 Silent p.H307H 0.78 TCGA-OR-A5LJ-01 16 30664048 30664048 G A PRR14 Missense_Mutation p.V67M 0.27 deleterious_low_confidence(0.04) benign(0.101) TCGA-OR-A5LJ-01 16 30780607 30780607 A G RNF40 Missense_Mutation p.D783G 0.04 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 16 31091261 31091261 G A ZNF646 Missense_Mutation p.E1206K 0.17 deleterious(0.01) possibly_damaging(0.665) TCGA-OR-A5LJ-01 16 314146 314146 C T ITFG3 Silent p.H440H 0.80 TCGA-OR-A5LJ-01 16 31473937 31473937 C T ARMC5 Missense_Mutation p.R357C 0.89 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 16 3340332 3340332 G T ZNF263 Missense_Mutation p.G609V 0.22 deleterious(0) probably_damaging(0.975) TCGA-OR-A5LJ-01 16 3582918 3582918 C T CLUAP1 Intron 0.10 TCGA-OR-A5LJ-01 16 47697593 47697593 G A PHKB Missense_Mutation p.V762I 0.67 tolerated(0.34) benign(0.013) TCGA-OR-A5LJ-01 16 50667165 50667165 C T NKD1 Missense_Mutation p.R296C 0.80 deleterious(0.03) benign(0.087) TCGA-OR-A5LJ-01 16 57507532 57507532 G A DOK4 Silent p.S285S 0.23 TCGA-OR-A5LJ-01 16 61761065 61761065 T C CDH8 Missense_Mutation p.N490S 0.80 deleterious(0) benign(0.239) TCGA-OR-A5LJ-01 16 66921626 66921626 C T PDP2 3'UTR 0.21 TCGA-OR-A5LJ-01 16 67380244 67380244 C T LRRC36 Missense_Mutation p.P95L 0.83 tolerated(0.11) benign(0.368) TCGA-OR-A5LJ-01 16 67701268 67701268 C T C16orf86 Missense_Mutation p.R58C 0.88 tolerated(1) benign(0.09) TCGA-OR-A5LJ-01 16 69352767 69352767 G A VPS4A Missense_Mutation p.V129M 0.78 deleterious(0) probably_damaging(0.978) TCGA-OR-A5LJ-01 16 732820 732820 C T JMJD8 Missense_Mutation p.V278I 0.84 deleterious(0) probably_damaging(0.917) TCGA-OR-A5LJ-01 16 84092913 84092913 G A MBTPS1 Missense_Mutation p.A942V 0.14 tolerated(0.1) benign(0.082) TCGA-OR-A5LJ-01 16 88706470 88706470 G A IL17C Missense_Mutation p.R195H 0.12 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LJ-01 16 88873021 88873021 C T CDT1 Missense_Mutation p.T354M 0.27 tolerated(0.21) benign(0.018) TCGA-OR-A5LJ-01 16 89661966 89661966 G A CPNE7 Silent p.A573A 0.04 TCGA-OR-A5LJ-01 16 90021667 90021667 G A DEF8 Missense_Mutation p.R133H 0.10 tolerated(0.19) benign(0.233) TCGA-OR-A5LJ-01 17 18054476 18054476 C T MYO15A Missense_Mutation p.A2509V 0.80 unknown(0) TCGA-OR-A5LJ-01 17 26800779 26800779 G A SLC13A2 Missense_Mutation p.V17M 0.19 deleterious(0.01) possibly_damaging(0.891) TCGA-OR-A5LJ-01 17 26919548 26919548 G A SPAG5 Silent p.N238N 0.82 TCGA-OR-A5LJ-01 17 28405430 28405430 C T EFCAB5 Missense_Mutation p.R979W 0.86 tolerated(0.09) benign(0.07) TCGA-OR-A5LJ-01 17 29204542 29204542 C T ATAD5 Missense_Mutation p.A1298V 0.81 deleterious(0) probably_damaging(0.995) TCGA-OR-A5LJ-01 17 33338994 33338994 C T RFFL Missense_Mutation p.R362Q 0.20 deleterious(0.01) possibly_damaging(0.716) TCGA-OR-A5LJ-01 17 38130530 38130530 C T GSDMA Silent p.D252D 0.81 TCGA-OR-A5LJ-01 17 38633890 38633890 G T TNS4 Missense_Mutation p.Q700K 0.83 tolerated(1) benign(0.006) TCGA-OR-A5LJ-01 17 3954155 3954155 G A ZZEF1 Missense_Mutation p.T1928M 0.76 tolerated(0.22) benign(0.007) TCGA-OR-A5LJ-01 17 40274804 40274804 G A HSPB9 5'UTR 0.79 TCGA-OR-A5LJ-01 17 4071191 4071191 C T ANKFY1 Missense_Mutation p.R1173H 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 17 40720854 40720856 GAT - MLX Splice_Site p.X112_splice 0.81 TCGA-OR-A5LJ-01 17 4348462 4348462 G C SPNS3 Missense_Mutation p.R134P 0.89 tolerated(0.07) benign(0.026) TCGA-OR-A5LJ-01 17 44846089 44846089 C T WNT3 Nonsense_Mutation p.W222* 0.72 TCGA-OR-A5LJ-01 17 5436698 5436698 G A NLRP1 Missense_Mutation p.A1020V 0.92 tolerated(0.3) benign(0) TCGA-OR-A5LJ-01 17 57754463 57754463 G A CLTC Missense_Mutation p.V904I 0.81 tolerated(0.14) benign(0.103) TCGA-OR-A5LJ-01 17 61621675 61621675 C - KCNH6 Frame_Shift_Del p.P804Qfs*17 0.43 TCGA-OR-A5LJ-01 17 61666544 61666544 C T DCAF7 3'UTR 0.84 TCGA-OR-A5LJ-01 17 61895428 61895428 C T DDX42 Silent p.S829S 0.11 TCGA-OR-A5LJ-01 17 62271012 62271012 G A TEX2 Nonsense_Mutation p.R695* 0.83 TCGA-OR-A5LJ-01 17 66391298 66391298 C T ARSG Silent p.S392S 0.80 TCGA-OR-A5LJ-01 17 71257098 71257098 A G CPSF4L Missense_Mutation p.F43S 0.84 deleterious(0.02) benign(0.1) TCGA-OR-A5LJ-01 17 7224496 7224496 A G NEURL4 Missense_Mutation p.S1099P 0.16 tolerated(0.27) benign(0.248) TCGA-OR-A5LJ-01 17 72838754 72838754 G A GRIN2C Silent p.H1174H 0.25 TCGA-OR-A5LJ-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.86 TCGA-OR-A5LJ-01 17 76424720 76424720 G A DNAH17 Silent p.N4152N 0.30 TCGA-OR-A5LJ-01 17 7752034 7752034 G A KDM6B Missense_Mutation p.V810M 0.79 possibly_damaging(0.791) TCGA-OR-A5LJ-01 17 78188920 78188920 G A SGSH Silent p.Y89Y 0.91 TCGA-OR-A5LJ-01 17 79424588 79424590 AAG - RP11-1055B8.7 In_Frame_Del p.K1674del 0.14 TCGA-OR-A5LJ-01 18 25582999 25582999 C A CDH2 Missense_Mutation p.G328C 0.83 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 18 30672841 30672841 G A CCDC178 Missense_Mutation p.R758C 0.80 tolerated(0.09) benign(0.122) TCGA-OR-A5LJ-01 18 31250678 31250678 G A ASXL3 Missense_Mutation p.M173I 0.86 benign(0.22) TCGA-OR-A5LJ-01 18 31324011 31324011 C G ASXL3 Missense_Mutation p.S1400C 0.06 possibly_damaging(0.503) TCGA-OR-A5LJ-01 18 43319234 43319234 G A SLC14A1 Missense_Mutation p.C313Y 0.09 deleterious(0) possibly_damaging(0.46) TCGA-OR-A5LJ-01 18 44159642 44159642 C T LOXHD1 Missense_Mutation p.R587Q 0.04 tolerated(0.51) possibly_damaging(0.776) TCGA-OR-A5LJ-01 18 44181267 44181267 G A LOXHD1 Silent p.I349I 0.59 TCGA-OR-A5LJ-01 18 47809921 47809921 G A CXXC1 Missense_Mutation p.T517M 0.74 tolerated(0.12) probably_damaging(0.996) TCGA-OR-A5LJ-01 18 56063446 56063446 G A NEDD4L Missense_Mutation p.R958Q 0.70 tolerated(0.09) probably_damaging(0.991) TCGA-OR-A5LJ-01 18 60017106 60017106 G A TNFRSF11A Silent p.P73P 0.87 TCGA-OR-A5LJ-01 18 61564454 61564454 G A SERPINB2 Splice_Site p.X139_splice 0.70 TCGA-OR-A5LJ-01 18 6997824 6997824 C T LAMA1 Missense_Mutation p.V1575I 0.31 tolerated(1) benign(0.001) TCGA-OR-A5LJ-01 18 72347651 72347651 G A ZNF407 Missense_Mutation p.R1559H 0.85 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 19 10798173 10798173 C T ILF3 Silent p.H741H 0.60 TCGA-OR-A5LJ-01 19 11218155 11218155 G T LDLR Missense_Mutation p.C302F 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 19 12429665 12429665 G A ZNF563 Missense_Mutation p.P392S 0.06 deleterious(0.02) probably_damaging(1) TCGA-OR-A5LJ-01 19 12858083 12858083 G A ASNA1 Missense_Mutation p.V228I 0.26 tolerated(0.32) benign(0.036) TCGA-OR-A5LJ-01 19 12881872 12881872 C A HOOK2 Missense_Mutation p.R259M 0.10 deleterious(0) probably_damaging(0.98) TCGA-OR-A5LJ-01 19 12980051 12980051 G A MAST1 Missense_Mutation p.R982H 0.36 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 19 13035057 13035057 G A FARSA Silent p.V432V 0.34 TCGA-OR-A5LJ-01 19 14640387 14640387 G A TECR 5'UTR 0.37 TCGA-OR-A5LJ-01 19 15292567 15292567 A G NOTCH3 Missense_Mutation p.F871S 0.07 deleterious(0) probably_damaging(0.995) TCGA-OR-A5LJ-01 19 15355539 15355539 G A BRD4 Silent p.P731P 0.33 TCGA-OR-A5LJ-01 19 15740063 15740063 G A CYP4F8 RNA 0.03 TCGA-OR-A5LJ-01 19 17945987 17945987 C T JAK3 Missense_Mutation p.R651Q 0.09 deleterious(0) possibly_damaging(0.605) TCGA-OR-A5LJ-01 19 1796766 1796766 C T ATP8B3 Missense_Mutation p.R566H 0.92 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 19 19770410 19770410 T G ATP13A1 Missense_Mutation p.K226T 0.13 tolerated(0.74) benign(0.01) TCGA-OR-A5LJ-01 19 30165469 30165469 G A PLEKHF1 Silent p.A241A 0.29 TCGA-OR-A5LJ-01 19 31769263 31769263 G A TSHZ3 Missense_Mutation p.A479V 0.16 tolerated(0.33) benign(0.001) TCGA-OR-A5LJ-01 19 35512852 35512852 C T GRAMD1A Intron 0.08 TCGA-OR-A5LJ-01 19 3595765 3595765 C T TBXA2R Missense_Mutation p.R318H 0.37 deleterious(0) probably_damaging(0.923) TCGA-OR-A5LJ-01 19 35991471 35991471 C T DMKN Silent p.A417A 0.39 TCGA-OR-A5LJ-01 19 36017942 36017945 CTGA - SBSN Frame_Shift_Del p.S413Rfs*26 0.48 TCGA-OR-A5LJ-01 19 36218685 36218686 TG - KMT2B Frame_Shift_Del p.V1464Afs*213 0.13 TCGA-OR-A5LJ-01 19 36229230 36229230 C T KMT2B Silent p.D2640D 0.38 TCGA-OR-A5LJ-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.36 TCGA-OR-A5LJ-01 19 38028650 38028650 G C ZNF793 Missense_Mutation p.E364Q 0.08 deleterious(0) probably_damaging(0.993) TCGA-OR-A5LJ-01 19 38609984 38609985 - C SIPA1L3 Frame_Shift_Ins p.I780Hfs*23 0.43 TCGA-OR-A5LJ-01 19 38780794 38780794 C T SPINT2 Missense_Mutation p.R143C 0.57 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LJ-01 19 39018344 39018344 C T RYR1 Missense_Mutation p.R3582C 0.49 benign(0.34) TCGA-OR-A5LJ-01 19 39905656 39905656 C - PLEKHG2 Frame_Shift_Del p.R47Efs*9 0.33 TCGA-OR-A5LJ-01 19 40368454 40368454 C T FCGBP Silent p.V4298V 0.13 TCGA-OR-A5LJ-01 19 40396278 40396278 G A FCGBP Silent p.C2373C 0.25 TCGA-OR-A5LJ-01 19 40486359 40486359 A T PSMC4 Missense_Mutation p.D362V 0.43 deleterious(0.04) benign(0.15) TCGA-OR-A5LJ-01 19 41132999 41132999 C T LTBP4 Missense_Mutation p.P1435S 0.39 tolerated(0.05) probably_damaging(0.992) TCGA-OR-A5LJ-01 19 41631437 41631437 G A CYP2F1 Missense_Mutation p.D398N 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-OR-A5LJ-01 19 42525580 42525580 G A GRIK5 Missense_Mutation p.R582C 0.08 deleterious(0.02) probably_damaging(0.94) TCGA-OR-A5LJ-01 19 42914843 42914843 C T LIPE Silent p.A345A 0.22 TCGA-OR-A5LJ-01 19 43411758 43411758 G A PSG6 Missense_Mutation p.R319C 0.42 tolerated(0.23) benign(0.009) TCGA-OR-A5LJ-01 19 45157249 45157249 C T PVR Missense_Mutation p.R269C 0.57 deleterious(0) probably_damaging(0.974) TCGA-OR-A5LJ-01 19 46094248 46094248 C T GPR4 Missense_Mutation p.A293T 0.50 tolerated(0.72) benign(0.013) TCGA-OR-A5LJ-01 19 47236402 47236402 C T STRN4 Missense_Mutation p.G211R 0.07 deleterious(0.01) possibly_damaging(0.742) TCGA-OR-A5LJ-01 19 47423998 47423998 G A ARHGAP35 Missense_Mutation p.R689Q 0.42 deleterious(0.03) possibly_damaging(0.561) TCGA-OR-A5LJ-01 19 4839518 4839518 G A PLIN3 Missense_Mutation p.R331W 0.78 deleterious(0) benign(0.219) TCGA-OR-A5LJ-01 19 49107038 49107038 G - FAM83E Frame_Shift_Del p.Q297Rfs*6 0.35 TCGA-OR-A5LJ-01 19 49238683 49238683 G A RASIP1 Missense_Mutation p.R317C 0.48 deleterious(0) probably_damaging(0.985) TCGA-OR-A5LJ-01 19 50098807 50098808 - C PRR12 Frame_Shift_Ins p.P409Tfs*150 0.28 TCGA-OR-A5LJ-01 19 50311889 50311889 C G FUZ Silent p.L300L 0.53 TCGA-OR-A5LJ-01 19 5244045 5244045 G A PTPRS Silent p.N479N 0.78 TCGA-OR-A5LJ-01 19 55054509 55054509 G A KIR3DX1 Intron 0.49 TCGA-OR-A5LJ-01 19 55494012 55494012 G A NLRP2 Missense_Mutation p.V316I 0.41 tolerated(0.28) benign(0.228) TCGA-OR-A5LJ-01 19 55656925 55656925 G A TNNT1 Missense_Mutation p.R39C 0.07 deleterious(0) unknown(0) TCGA-OR-A5LJ-01 19 57088962 57088964 TAT - ZNF470 In_Frame_Del p.Y390del 0.35 TCGA-OR-A5LJ-01 19 57328441 57328441 A G PEG3 Missense_Mutation p.C457R 0.49 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 19 58002904 58002904 C T ZNF419 Silent p.D47D 0.32 TCGA-OR-A5LJ-01 19 59028363 59028363 G A ZBTB45 Silent p.G226G 0.11 TCGA-OR-A5LJ-01 19 7529570 7529576 GCAGGTG - ARHGEF18 Frame_Shift_Del 0.16 TCGA-OR-A5LJ-01 19 8203066 8203066 G A FBN3 Missense_Mutation p.A387V 0.57 tolerated(0.5) benign(0.001) TCGA-OR-A5LJ-01 19 8464942 8464942 C T RAB11B Missense_Mutation p.A79V 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-OR-A5LJ-01 19 9959811 9959811 C T PIN1 Missense_Mutation p.T143M 0.61 deleterious(0.03) benign(0.4) TCGA-OR-A5LJ-01 1 110254888 110254888 C - GSTM5 5'UTR 0.46 TCGA-OR-A5LJ-01 1 114524270 114524270 G A OLFML3 Missense_Mutation p.R367H 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-OR-A5LJ-01 1 115615562 115615562 A G TSPAN2 Missense_Mutation p.S46P 0.77 deleterious(0.04) possibly_damaging(0.828) TCGA-OR-A5LJ-01 1 13474795 13474798 CTTA - PRAMEF18 Frame_Shift_Del p.V444Gfs*? 0.78 TCGA-OR-A5LJ-01 1 145074950 145074950 G A PDE4DIP 3'UTR 0.38 TCGA-OR-A5LJ-01 1 152659333 152659333 A G LCE2B Missense_Mutation p.Q5R 0.86 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5LJ-01 1 153604094 153604094 C T S100A1 Intron 0.60 TCGA-OR-A5LJ-01 1 155257602 155257602 G A HCN3 Missense_Mutation p.R558H 0.16 tolerated(0.37) possibly_damaging(0.523) TCGA-OR-A5LJ-01 1 155823172 155823172 T - GON4L Frame_Shift_Del p.M134* 0.23 TCGA-OR-A5LJ-01 1 156437983 156437983 C T MEF2D Silent p.A452A 0.88 TCGA-OR-A5LJ-01 1 156640677 156640677 C T NES Silent p.P1101P 0.91 TCGA-OR-A5LJ-01 1 157805632 157805632 C T CD5L Silent p.S123S 0.75 TCGA-OR-A5LJ-01 1 165865482 165865482 C A UCK2 Missense_Mutation p.L138M 0.12 tolerated(0.11) probably_damaging(1) TCGA-OR-A5LJ-01 1 166891885 166891885 G A ILDR2 Missense_Mutation p.R386C 0.73 deleterious(0) probably_damaging(0.915) TCGA-OR-A5LJ-01 1 169559391 169559391 G A SELP Missense_Mutation p.P830S 0.80 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-OR-A5LJ-01 1 17302155 17302155 G A MFAP2 Silent p.N119N 0.77 TCGA-OR-A5LJ-01 1 174418476 174418476 T - GPR52 3'UTR 0.65 TCGA-OR-A5LJ-01 1 178412191 178412191 C T RASAL2 Missense_Mutation p.R437C 0.27 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 1 18691904 18691904 C T IGSF21 Missense_Mutation p.T243M 0.81 deleterious(0.02) probably_damaging(0.998) TCGA-OR-A5LJ-01 1 19545802 19545802 G A EMC1 Nonsense_Mutation p.R993* 0.58 TCGA-OR-A5LJ-01 1 203025515 203025515 C A PPFIA4 Silent p.R201R 0.80 TCGA-OR-A5LJ-01 1 207318100 207318100 C T C4BPA 3'UTR 0.87 TCGA-OR-A5LJ-01 1 215408439 215408439 C T KCNK2 Missense_Mutation p.T411M 0.78 deleterious_low_confidence(0.01) benign(0.271) TCGA-OR-A5LJ-01 1 226342403 226342403 G A ACBD3 Silent p.S345S 0.89 TCGA-OR-A5LJ-01 1 226555191 226555191 G A PARP1 Missense_Mutation p.T799I 0.23 deleterious(0) probably_damaging(0.992) TCGA-OR-A5LJ-01 1 229768022 229768022 C A URB2 Missense_Mutation p.L45I 0.05 deleterious(0.03) benign(0.382) TCGA-OR-A5LJ-01 1 23222940 23222940 G A EPHB2 Silent p.T579T 0.79 TCGA-OR-A5LJ-01 1 234367444 234367444 G A SLC35F3 Missense_Mutation p.V189I 0.80 tolerated(0.08) benign(0.071) TCGA-OR-A5LJ-01 1 26139207 26139207 C T SEPN1 Silent p.F437F 0.82 TCGA-OR-A5LJ-01 1 32670245 32670248 TATG - CCDC28B Intron 0.85 TCGA-OR-A5LJ-01 1 33134949 33134949 A G RBBP4 Silent p.S293S 0.87 TCGA-OR-A5LJ-01 1 35365799 35365799 C T DLGAP3 Missense_Mutation p.G395S 0.06 tolerated(0.17) probably_damaging(0.998) TCGA-OR-A5LJ-01 1 39991519 39991519 C G BMP8A 3'UTR 0.85 TCGA-OR-A5LJ-01 1 40230376 40230376 G A BMP8B Missense_Mutation p.R263W 0.16 deleterious(0) benign(0.331) TCGA-OR-A5LJ-01 1 42657281 42657281 G C FOXJ3 Missense_Mutation p.S348R 0.86 tolerated(0.07) benign(0.154) TCGA-OR-A5LJ-01 1 46751559 46751559 G A LRRC41 Missense_Mutation p.R324C 0.09 tolerated(0.05) possibly_damaging(0.835) TCGA-OR-A5LJ-01 1 52254866 52254866 T C OSBPL9 3'Flank 0.26 TCGA-OR-A5LJ-01 1 60456488 60456488 G A C1orf87 Nonsense_Mutation p.R500* 0.58 TCGA-OR-A5LJ-01 1 60463390 60463390 C G C1orf87 Missense_Mutation p.Q457H 0.86 deleterious(0) probably_damaging(0.967) TCGA-OR-A5LJ-01 1 63789205 63789207 AGA - FOXD3 In_Frame_Del p.K161del 0.10 TCGA-OR-A5LJ-01 1 6525618 6525618 C T TNFRSF25 Silent p.A14A 0.81 TCGA-OR-A5LJ-01 1 67155933 67155933 C T SGIP1 Missense_Mutation p.R502W 0.83 deleterious(0) probably_damaging(0.973) TCGA-OR-A5LJ-01 1 67195022 67195022 G A SGIP1 Silent p.P606P 0.75 TCGA-OR-A5LJ-01 1 87369102 87369102 C T SEP15 Silent p.S35S 0.86 TCGA-OR-A5LJ-01 1 87599339 87599339 G A RP5-1052I5.2 Missense_Mutation p.C270Y 0.85 tolerated_low_confidence(0.07) unknown(0) TCGA-OR-A5LJ-01 20 1146834 1146834 C A PSMF1 3'UTR 0.09 TCGA-OR-A5LJ-01 20 13695480 13695480 T C ESF1 3'UTR 0.34 TCGA-OR-A5LJ-01 20 17639980 17639980 T - RRBP1 Intron 0.08 TCGA-OR-A5LJ-01 20 31196470 31196470 C T RP11-410N8.4 Missense_Mutation p.A130V 0.38 possibly_damaging(0.682) TCGA-OR-A5LJ-01 20 31671498 31671498 G A BPIFB4 Silent p.A165A 0.45 TCGA-OR-A5LJ-01 20 3275220 3275220 G A C20orf194 Missense_Mutation p.R692W 0.35 tolerated(0.19) benign(0) TCGA-OR-A5LJ-01 20 35060497 35060497 G A DLGAP4 Missense_Mutation p.R126H 0.47 deleterious(0) probably_damaging(0.96) TCGA-OR-A5LJ-01 20 3640605 3640605 C T GFRA4 Missense_Mutation p.R284H 0.43 tolerated(0.23) benign(0.003) TCGA-OR-A5LJ-01 20 37546897 37546897 C T PPP1R16B Missense_Mutation p.P431L 0.09 deleterious(0.02) benign(0.158) TCGA-OR-A5LJ-01 20 39795024 39795024 G A PLCG1 Missense_Mutation p.E664K 0.46 deleterious(0.04) possibly_damaging(0.832) TCGA-OR-A5LJ-01 20 42815069 42815069 G A JPH2 Missense_Mutation p.R93C 0.04 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 20 43118014 43118014 C T TTPAL Silent p.N287N 0.05 TCGA-OR-A5LJ-01 20 43559220 43559220 C T PABPC1L Silent p.Y364Y 0.44 TCGA-OR-A5LJ-01 20 45023110 45023110 C T ELMO2 Silent p.P4P 0.42 TCGA-OR-A5LJ-01 20 45170427 45170427 C T OCSTAMP Missense_Mutation p.R396H 0.41 tolerated(0.35) benign(0.091) TCGA-OR-A5LJ-01 20 46293982 46293982 T G SULF2 Missense_Mutation p.K653T 0.47 deleterious(0.03) probably_damaging(0.943) TCGA-OR-A5LJ-01 20 4781696 4781696 C T RASSF2 5'UTR 0.15 TCGA-OR-A5LJ-01 20 55748216 55748216 C T BMP7 Intron 0.42 TCGA-OR-A5LJ-01 20 55777574 55777574 C T BMP7 Silent p.P239P 0.44 TCGA-OR-A5LJ-01 20 55931510 55931510 C T RAE1 Silent p.C68C 0.42 TCGA-OR-A5LJ-01 20 60499460 60499460 C T CDH4 Missense_Mutation p.A566V 0.41 tolerated(0.3) benign(0.004) TCGA-OR-A5LJ-01 20 60509119 60509119 C T CDH4 Silent p.Y795Y 0.47 TCGA-OR-A5LJ-01 20 61443813 61443813 C T OGFR Silent p.C282C 0.13 TCGA-OR-A5LJ-01 20 62172334 62172334 G A SRMS Missense_Mutation p.T435M 0.46 deleterious(0.01) probably_damaging(0.976) TCGA-OR-A5LJ-01 20 62328346 62328346 C T TNFRSF6B Missense_Mutation p.R76C 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-OR-A5LJ-01 20 853509 853509 C T ANGPT4 3'UTR 0.45 TCGA-OR-A5LJ-01 21 34537955 34537955 C T C21orf54 3'UTR 0.85 TCGA-OR-A5LJ-01 21 41384893 41384893 A - DSCAM 3'UTR 0.94 TCGA-OR-A5LJ-01 21 45548439 45548439 G A PWP2 Silent p.G839G 0.89 TCGA-OR-A5LJ-01 21 45970344 45970344 C T KRTAP10-2 3'UTR 0.05 TCGA-OR-A5LJ-01 21 46931077 46931077 C T COL18A1 Missense_Mutation p.P1429L 0.26 benign(0.007) TCGA-OR-A5LJ-01 21 46935562 46935562 C T SLC19A1 3'UTR 0.73 TCGA-OR-A5LJ-01 22 18070754 18070754 C T SLC25A18 Silent p.N213N 0.81 TCGA-OR-A5LJ-01 22 20230060 20230060 C T RTN4R Missense_Mutation p.R199H 0.82 deleterious(0) benign(0.168) TCGA-OR-A5LJ-01 22 21332292 21332292 A G AIFM3 Missense_Mutation p.Q492R 0.04 deleterious(0.01) benign(0.15) TCGA-OR-A5LJ-01 22 26422656 26422656 C T MYO18B Missense_Mutation p.S2239L 0.06 tolerated(0.37) benign(0.009) TCGA-OR-A5LJ-01 22 32614516 32614516 G A SLC5A4 Silent p.H655H 0.88 TCGA-OR-A5LJ-01 22 35734781 35734781 G A TOM1 Silent p.A408A 0.12 TCGA-OR-A5LJ-01 22 36900582 36900582 G T FOXRED2 Silent p.T253T 0.88 TCGA-OR-A5LJ-01 22 38273801 38273801 C T EIF3L Missense_Mutation p.R400C 0.83 deleterious(0) benign(0.056) TCGA-OR-A5LJ-01 22 40803553 40803553 G A SGSM3 Missense_Mutation p.R502H 0.97 tolerated(0.05) possibly_damaging(0.75) TCGA-OR-A5LJ-01 22 41572252 41572254 TCT - EP300 In_Frame_Del p.F1596del 0.74 TCGA-OR-A5LJ-01 22 41832698 41832698 G A TOB2 Missense_Mutation p.R218C 0.80 deleterious(0.03) possibly_damaging(0.828) TCGA-OR-A5LJ-01 22 44221749 44221749 G A SULT4A1 3'UTR 0.13 TCGA-OR-A5LJ-01 22 45566920 45566920 C T NUP50 Intron 0.80 TCGA-OR-A5LJ-01 22 46653903 46653903 G A PKDREJ Missense_Mutation p.H1773Y 0.20 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 22 50899065 50899065 C T SBF1 Missense_Mutation p.R1015Q 0.77 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 2 107459762 107459762 C T ST6GAL2 Silent p.A224A 0.08 TCGA-OR-A5LJ-01 2 109124031 109124031 C T GCC2 Missense_Mutation p.A1667V 0.84 tolerated(0.08) benign(0.024) TCGA-OR-A5LJ-01 2 111144803 111144803 G A LINC01106 5'Flank 0.33 TCGA-OR-A5LJ-01 2 111851230 111851230 T A ACOXL Intron 0.11 TCGA-OR-A5LJ-01 2 119600797 119600799 TTC - EN1 In_Frame_Del p.K298del 0.67 TCGA-OR-A5LJ-01 2 11960588 11960588 G A LPIN1 Missense_Mutation p.V906I 0.75 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5LJ-01 2 128945079 128945079 G A UGGT1 Silent p.P1511P 0.17 TCGA-OR-A5LJ-01 2 1520736 1520736 C T TPO Missense_Mutation p.S867L 0.81 deleterious(0.02) benign(0.014) TCGA-OR-A5LJ-01 2 162813676 162813676 C T SLC4A10 Missense_Mutation p.R907W 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-OR-A5LJ-01 2 163236465 163236465 G C KCNH7 Missense_Mutation p.S1010C 0.06 tolerated(0.09) benign(0.276) TCGA-OR-A5LJ-01 2 170518906 170518907 - T CCDC173 Frame_Shift_Ins p.Y235Ifs*2 0.14 TCGA-OR-A5LJ-01 2 171509587 171509587 T - MYO3B Frame_Shift_Del p.S1330Lfs*102 0.31 TCGA-OR-A5LJ-01 2 174228042 174228042 G A CDCA7 Missense_Mutation p.R158Q 0.15 deleterious(0.05) benign(0.045) TCGA-OR-A5LJ-01 2 203817288 203817288 G A CARF Missense_Mutation p.V105I 0.08 tolerated_low_confidence(0.09) benign(0.007) TCGA-OR-A5LJ-01 2 21230766 21230766 C T APOB Missense_Mutation p.V2992I 0.05 benign(0.005) TCGA-OR-A5LJ-01 2 215820071 215820071 G A ABCA12 Missense_Mutation p.S2083F 0.80 deleterious(0.03) probably_damaging(0.998) TCGA-OR-A5LJ-01 2 219140123 219140123 G A TMBIM1 3'UTR 0.46 TCGA-OR-A5LJ-01 2 219140124 219140124 A G TMBIM1 3'UTR 0.41 TCGA-OR-A5LJ-01 2 238617211 238617211 C T LRRFIP1 Missense_Mutation p.R31W 0.79 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 2 241401648 241401648 G A GPC1 Silent p.L122L 0.04 TCGA-OR-A5LJ-01 2 25366724 25366724 G T EFR3B Missense_Mutation p.Q681H 0.82 tolerated(0.06) probably_damaging(0.975) TCGA-OR-A5LJ-01 2 32396391 32396391 C T SLC30A6 Silent p.S13S 0.42 TCGA-OR-A5LJ-01 2 47707899 47707900 AG - MSH2 Frame_Shift_Del p.E842Vfs*3 0.46 TCGA-OR-A5LJ-01 2 5835011 5835011 T - SOX11 3'UTR 0.78 TCGA-OR-A5LJ-01 2 61729431 61729431 C T XPO1 Missense_Mutation p.V106I 0.06 tolerated(1) benign(0.003) TCGA-OR-A5LJ-01 2 69049670 69049670 A - ARHGAP25 Frame_Shift_Del p.N468Mfs*98 0.24 TCGA-OR-A5LJ-01 2 74058012 74058012 C T STAMBP Missense_Mutation p.P10L 0.84 tolerated(0.11) benign(0.003) TCGA-OR-A5LJ-01 2 74763595 74763595 G A LOXL3 Missense_Mutation p.R306C 0.81 tolerated(0.05) benign(0.001) TCGA-OR-A5LJ-01 2 85924745 85924745 C T GNLY Silent p.A124A 0.87 TCGA-OR-A5LJ-01 3 10219666 10219666 G A IRAK2 Missense_Mutation p.R80H 0.10 tolerated(0.51) benign(0.003) TCGA-OR-A5LJ-01 3 108219012 108219012 G - MYH15 Frame_Shift_Del p.P170Lfs*35 0.09 TCGA-OR-A5LJ-01 3 126726724 126726724 G A PLXNA1 Missense_Mutation p.A694T 0.42 tolerated(0.1) benign(0.22) TCGA-OR-A5LJ-01 3 126752807 126752807 C T PLXNA1 Missense_Mutation p.R1880W 0.20 deleterious(0) probably_damaging(0.924) TCGA-OR-A5LJ-01 3 12778317 12778317 C T TMEM40 Missense_Mutation p.V164I 0.11 tolerated(0.1) benign(0.037) TCGA-OR-A5LJ-01 3 131219274 131219274 C T MRPL3 Silent p.Q123Q 0.41 TCGA-OR-A5LJ-01 3 134911554 134911554 C T EPHB1 Silent p.G673G 0.42 TCGA-OR-A5LJ-01 3 140407267 140407267 C T TRIM42 Silent p.S581S 0.35 TCGA-OR-A5LJ-01 3 149485286 149485286 T G ANKUB1 Missense_Mutation p.K388T 0.07 tolerated(0.05) possibly_damaging(0.479) TCGA-OR-A5LJ-01 3 150644617 150644620 GAAG - CLRN1 3'Flank 0.47 TCGA-OR-A5LJ-01 3 151011993 151011993 C T GPR87 Silent p.S347S 0.47 TCGA-OR-A5LJ-01 3 153970947 153970947 C T ARHGEF26 Silent p.S781S 0.13 TCGA-OR-A5LJ-01 3 16646816 16646816 C T DAZL 5'Flank 0.52 TCGA-OR-A5LJ-01 3 169511575 169511575 C T LRRC34 Missense_Mutation p.V415M 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 3 169985778 169985778 G A PRKCI Missense_Mutation p.R147H 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-OR-A5LJ-01 3 172070715 172070715 T C FNDC3B Silent p.P879P 0.38 TCGA-OR-A5LJ-01 3 182990784 182990784 T - MCF2L2 Intron 0.37 TCGA-OR-A5LJ-01 3 183732094 183732094 C T ABCC5 Silent p.T29T 0.09 TCGA-OR-A5LJ-01 3 184042024 184042025 TG - EIF4G1 Frame_Shift_Del p.V844Efs*15 0.19 TCGA-OR-A5LJ-01 3 184290407 184290407 G A EPHB3 Missense_Mutation p.R100Q 0.51 tolerated(0.41) benign(0.081) TCGA-OR-A5LJ-01 3 184297350 184297350 C T EPHB3 Silent p.D629D 0.11 TCGA-OR-A5LJ-01 3 194080702 194080702 G A LRRC15 Silent p.D363D 0.45 TCGA-OR-A5LJ-01 3 195306326 195306326 T G APOD Missense_Mutation p.M3L 0.36 tolerated(1) unknown(0) TCGA-OR-A5LJ-01 3 195516022 195516022 G A MUC4 Missense_Mutation p.A810V 0.38 unknown(0) TCGA-OR-A5LJ-01 3 195516579 195516579 T C MUC4 Silent p.T624T 0.41 TCGA-OR-A5LJ-01 3 197598289 197598289 C T LRCH3 Nonsense_Mutation p.R696* 0.49 TCGA-OR-A5LJ-01 3 197702954 197702954 C T LMLN Nonsense_Mutation p.R135* 0.43 TCGA-OR-A5LJ-01 3 32774948 32774948 A - CNOT10 Frame_Shift_Del p.G479Efs*15 0.23 TCGA-OR-A5LJ-01 3 37107722 37107722 G A LRRFIP2 Missense_Mutation p.T520M 0.11 tolerated_low_confidence(0.1) benign(0.064) TCGA-OR-A5LJ-01 3 37514857 37514857 G A ITGA9 Missense_Mutation p.G109D 0.43 tolerated(0.13) benign(0.03) TCGA-OR-A5LJ-01 3 38618243 38618243 G A SCN5A Silent p.S1140S 0.39 TCGA-OR-A5LJ-01 3 41266104 41266104 G A CTNNB1 Missense_Mutation p.G34E 0.88 deleterious(0.03) probably_damaging(0.993) TCGA-OR-A5LJ-01 3 44488379 44488379 C T ZNF445 Silent p.P928P 0.83 TCGA-OR-A5LJ-01 3 447311 447311 A G CHL1 Missense_Mutation p.I1198V 0.83 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 3 46718502 46718502 C T ALS2CL Missense_Mutation p.V590M 0.75 tolerated(0.12) benign(0.148) TCGA-OR-A5LJ-01 3 48336637 48336637 G A NME6 Missense_Mutation p.R116C 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-OR-A5LJ-01 3 48693263 48693263 G A CELSR3 Silent p.S1549S 0.14 TCGA-OR-A5LJ-01 3 49760038 49760038 C A GMPPB Missense_Mutation p.Q184H 0.27 deleterious(0.03) benign(0.002) TCGA-OR-A5LJ-01 3 50097175 50097175 C T RBM6 Nonsense_Mutation p.R742* 0.04 TCGA-OR-A5LJ-01 3 50414955 50414955 G A CACNA2D2 Silent p.G523G 0.05 TCGA-OR-A5LJ-01 3 52550142 52550142 G A STAB1 Silent p.G1344G 0.10 TCGA-OR-A5LJ-01 3 52554026 52554026 G C STAB1 Missense_Mutation p.D1768H 0.43 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 3 52584594 52584594 T A PBRM1 Silent p.P1473P 0.57 TCGA-OR-A5LJ-01 3 52821065 52821065 G T ITIH1 Missense_Mutation p.G613V 0.15 deleterious(0.01) probably_damaging(0.964) TCGA-OR-A5LJ-01 3 52847474 52847474 G A ITIH4 Missense_Mutation p.P919L 0.47 tolerated(0.05) benign(0.344) TCGA-OR-A5LJ-01 3 53911367 53911367 G A ACTR8 Silent p.I186I 0.04 TCGA-OR-A5LJ-01 3 58196552 58196552 C T DNASE1L3 Missense_Mutation p.V28I 0.43 tolerated(0.47) benign(0.08) TCGA-OR-A5LJ-01 3 58484355 58484357 CCT - KCTD6 5'UTR 0.38 TCGA-OR-A5LJ-01 3 62355881 62355881 G A FEZF2 Silent p.C419C 0.05 TCGA-OR-A5LJ-01 3 71027087 71027087 G - FOXP1 Frame_Shift_Del p.L416* 0.15 TCGA-OR-A5LJ-01 3 77623681 77623681 A G ROBO2 Missense_Mutation p.Y684C 0.06 deleterious(0) probably_damaging(0.983) TCGA-OR-A5LJ-01 3 97744481 97744481 C T GABRR3 RNA 0.44 TCGA-OR-A5LJ-01 4 100349278 100349278 G A ADH7 Missense_Mutation p.R125C 0.79 tolerated(0.18) benign(0.013) TCGA-OR-A5LJ-01 4 153249473 153249473 A G FBXW7 Silent p.I435I 0.85 TCGA-OR-A5LJ-01 4 159092445 159092445 C G FAM198B Missense_Mutation p.S28T 0.85 tolerated(0.55) benign(0.294) TCGA-OR-A5LJ-01 4 17711136 17711136 G A FAM184B Silent p.C91C 0.78 TCGA-OR-A5LJ-01 4 186272686 186272686 G A SNX25 Missense_Mutation p.V633M 0.73 tolerated(0.07) benign(0.313) TCGA-OR-A5LJ-01 4 3432439 3432439 G A RGS12 Missense_Mutation p.G1291R 0.08 tolerated(0.2) possibly_damaging(0.636) TCGA-OR-A5LJ-01 4 3444827 3444827 C T HGFAC Missense_Mutation p.R117C 0.81 deleterious(0) probably_damaging(0.976) TCGA-OR-A5LJ-01 4 36069850 36069851 TT - ARAP2 Frame_Shift_Del p.K1598Rfs*6 0.72 TCGA-OR-A5LJ-01 4 56283354 56283354 T C TMEM165 Silent p.P183P 0.81 TCGA-OR-A5LJ-01 4 7436430 7436430 C T PSAPL1 Silent p.A59A 0.26 TCGA-OR-A5LJ-01 4 76924817 76924817 T - CXCL9 Frame_Shift_Del p.K104Nfs*8 0.25 TCGA-OR-A5LJ-01 4 78987147 78987147 G A FRAS1 Missense_Mutation p.V29I 0.79 benign(0.012) TCGA-OR-A5LJ-01 4 79366741 79366742 - A FRAS1 Frame_Shift_Ins p.N1912Kfs*11 0.11 TCGA-OR-A5LJ-01 4 81967506 81967507 AA T BMP3 Frame_Shift_Del p.K311Wfs*46 0.47 TCGA-OR-A5LJ-01 4 90170124 90170124 G - GPRIN3 Frame_Shift_Del p.Q380Rfs*61 0.13 TCGA-OR-A5LJ-01 5 10681252 10681252 C T DAP Silent p.A75A 0.39 TCGA-OR-A5LJ-01 5 115813772 115813772 C T SEMA6A Silent p.A502A 0.11 TCGA-OR-A5LJ-01 5 132097247 132097247 G A SEPT8 Missense_Mutation p.R289C 0.46 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 5 132569152 132569152 G A FSTL4 Silent p.S324S 0.46 TCGA-OR-A5LJ-01 5 139939977 139939977 C T APBB3 Missense_Mutation p.R389H 0.03 tolerated(0.24) benign(0) TCGA-OR-A5LJ-01 5 140174695 140174695 C T PCDHA2 Missense_Mutation p.A49V 0.49 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-OR-A5LJ-01 5 140725147 140725147 C T PCDHGA3 Missense_Mutation p.A516V 0.34 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-OR-A5LJ-01 5 140725295 140725295 C T PCDHGA3 Silent p.P565P 0.21 TCGA-OR-A5LJ-01 5 156746911 156746911 C T CYFIP2 Missense_Mutation p.R474W 0.41 deleterious(0) possibly_damaging(0.882) TCGA-OR-A5LJ-01 5 1589371 1589371 G A SDHAP3 RNA 0.42 TCGA-OR-A5LJ-01 5 169685169 169685169 C T LCP2 Silent p.V324V 0.12 TCGA-OR-A5LJ-01 5 172744904 172744904 G A STC2 Silent p.S285S 0.06 TCGA-OR-A5LJ-01 5 17276298 17276298 G T BASP1 3'UTR 0.44 TCGA-OR-A5LJ-01 5 175959061 175959061 G A RNF44 Nonsense_Mutation p.R81* 0.05 TCGA-OR-A5LJ-01 5 176084013 176084013 C - TSPAN17 Intron 0.36 TCGA-OR-A5LJ-01 5 177420005 177420005 C T PROP1 Missense_Mutation p.R129H 0.35 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LJ-01 5 178567010 178567010 C T ADAMTS2 Nonsense_Mutation p.W552* 0.53 TCGA-OR-A5LJ-01 5 180650960 180650960 C A TRIM41 5'UTR 0.47 TCGA-OR-A5LJ-01 5 192355 192355 C A LRRC14B Silent p.A234A 0.06 TCGA-OR-A5LJ-01 5 32789838 32789838 C T AC026703.1 Missense_Mutation p.H111Y 0.47 benign(0) TCGA-OR-A5LJ-01 5 35867541 35867541 A - IL7R Frame_Shift_Del p.I121* 0.23 TCGA-OR-A5LJ-01 5 442249 442249 C T C5orf55 3'UTR 0.61 TCGA-OR-A5LJ-01 5 55056049 55056049 G A DDX4 Missense_Mutation p.R50Q 0.44 tolerated_low_confidence(0.16) benign(0.003) TCGA-OR-A5LJ-01 5 55063742 55063742 G T DDX4 Missense_Mutation p.R123L 0.49 deleterious_low_confidence(0.03) benign(0.166) TCGA-OR-A5LJ-01 5 60224762 60224765 TTTA - ERCC8 Frame_Shift_Del p.N33Kfs*34 0.49 TCGA-OR-A5LJ-01 5 70858262 70858262 A - BDP1 Frame_Shift_Del p.N2555Ifs*35 0.09 TCGA-OR-A5LJ-01 5 74066537 74066539 AAG - NSA2 In_Frame_Del p.K144del 0.47 TCGA-OR-A5LJ-01 5 76709039 76709039 G A PDE8B Missense_Mutation p.A606T 0.11 tolerated(0.08) benign(0.014) TCGA-OR-A5LJ-01 5 92929487 92929487 G A NR2F1 Missense_Mutation p.R404H 0.50 deleterious(0.01) probably_damaging(0.975) TCGA-OR-A5LJ-01 5 93807171 93807171 T - KIAA0825 Frame_Shift_Del p.K574Nfs*81 0.35 TCGA-OR-A5LJ-01 5 96112082 96112082 C T ERAP1 Intron 0.47 TCGA-OR-A5LJ-01 6 109249377 109249377 G A ARMC2 Silent p.T479T 0.50 TCGA-OR-A5LJ-01 6 109308793 109308793 G A SESN1 Missense_Mutation p.A537V 0.64 deleterious(0.01) probably_damaging(0.915) TCGA-OR-A5LJ-01 6 110300812 110300812 G A GPR6 Missense_Mutation p.R166H 0.80 deleterious(0) probably_damaging(0.996) TCGA-OR-A5LJ-01 6 12162023 12162023 G A HIVEP1 Missense_Mutation p.R2280H 0.77 tolerated(0.51) benign(0.001) TCGA-OR-A5LJ-01 6 121655474 121655474 A C TBC1D32 Missense_Mutation p.C35G 0.06 tolerated(0.06) benign(0.045) TCGA-OR-A5LJ-01 6 131944491 131944491 C A MED23 Missense_Mutation p.K132N 0.28 deleterious(0) possibly_damaging(0.5) TCGA-OR-A5LJ-01 6 142396778 142396778 G T NMBR 3'UTR 0.83 TCGA-OR-A5LJ-01 6 144269185 144269185 C T PLAGL1 Missense_Mutation p.R30Q 0.86 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 6 150123630 150123630 C T PCMT1 Intron 0.92 TCGA-OR-A5LJ-01 6 150690088 150690088 C T IYD 5'UTR 0.22 TCGA-OR-A5LJ-01 6 158349722 158349722 C T SNX9 Missense_Mutation p.R426C 0.86 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 6 159660704 159660704 C T FNDC1 Missense_Mutation p.P1446S 0.66 deleterious_low_confidence(0.04) unknown(0) TCGA-OR-A5LJ-01 6 160864677 160864677 G A SLC22A3 Silent p.S471S 0.86 TCGA-OR-A5LJ-01 6 161139344 161139344 C A PLG Missense_Mutation p.S269Y 0.04 deleterious(0.03) possibly_damaging(0.465) TCGA-OR-A5LJ-01 6 16306908 16306908 G A ATXN1 Silent p.P700P 0.83 TCGA-OR-A5LJ-01 6 22294740 22294740 G T PRL Silent p.G34G 0.32 TCGA-OR-A5LJ-01 6 25779541 25779541 G A SLC17A4 3'UTR 0.58 TCGA-OR-A5LJ-01 6 26093089 26093089 C A HFE Missense_Mutation p.Q265K 0.25 deleterious(0.01) possibly_damaging(0.811) TCGA-OR-A5LJ-01 6 26468070 26468070 C T BTN2A1 Intron 0.56 TCGA-OR-A5LJ-01 6 31615616 31615617 GA - BAG6 Frame_Shift_Del p.L186Pfs*39 0.43 TCGA-OR-A5LJ-01 6 31747038 31747038 G A VARS Silent p.G1144G 0.93 TCGA-OR-A5LJ-01 6 32037421 32037421 C T TNXB Silent p.P1832P 0.07 TCGA-OR-A5LJ-01 6 33423520 33423522 GAG - ZBTB9 In_Frame_Del p.E219del 0.24 TCGA-OR-A5LJ-01 6 33638975 33638975 G A ITPR3 Missense_Mutation p.G874S 0.24 deleterious(0.01) probably_damaging(1) TCGA-OR-A5LJ-01 6 36179103 36179103 G T BRPF3 Nonsense_Mutation p.E750* 0.92 TCGA-OR-A5LJ-01 6 40400435 40400435 C T LRFN2 Missense_Mutation p.A140T 0.84 tolerated(0.08) benign(0.322) TCGA-OR-A5LJ-01 6 42627467 42627467 G A UBR2 Missense_Mutation p.V1106I 0.80 tolerated(0.07) benign(0.002) TCGA-OR-A5LJ-01 6 42992729 42992729 C T RRP36 Missense_Mutation p.S46F 0.37 deleterious(0.05) benign(0.033) TCGA-OR-A5LJ-01 6 43230559 43230559 G A TTBK1 Missense_Mutation p.R486H 0.23 possibly_damaging(0.833) TCGA-OR-A5LJ-01 6 43415084 43415084 G A ABCC10 Missense_Mutation p.V1215I 0.06 deleterious(0.02) possibly_damaging(0.708) TCGA-OR-A5LJ-01 6 44144037 44144037 C A CAPN11 Silent p.P321P 0.25 TCGA-OR-A5LJ-01 6 54185431 54185431 G T TINAG Missense_Mutation p.C137F 0.68 deleterious(0) possibly_damaging(0.707) TCGA-OR-A5LJ-01 6 64395054 64395054 C T PHF3 Silent p.S477S 0.84 TCGA-OR-A5LJ-01 6 70873275 70873275 C T COL19A1 Missense_Mutation p.A796V 0.79 tolerated(0.17) benign(0.079) TCGA-OR-A5LJ-01 6 7393387 7393387 C T RIOK1 Missense_Mutation p.L43F 0.83 tolerated(0.25) benign(0.004) TCGA-OR-A5LJ-01 7 100802405 100802405 G - AP1S1 Frame_Shift_Del p.D122Mfs*11 0.46 TCGA-OR-A5LJ-01 7 102038071 102038071 A G PRKRIP1 Missense_Mutation p.K44R 0.49 tolerated(0.08) possibly_damaging(0.731) TCGA-OR-A5LJ-01 7 102098305 102098305 G A ALKBH4 Missense_Mutation p.R149W 0.31 tolerated(0.09) benign(0.022) TCGA-OR-A5LJ-01 7 103006564 103006564 A - PSMC2 Frame_Shift_Del p.A269Pfs*34 0.31 TCGA-OR-A5LJ-01 7 104717504 104717504 A G KMT2E Missense_Mutation p.N288S 0.44 tolerated(0.7) benign(0.292) TCGA-OR-A5LJ-01 7 104767476 104767479 CAAA - SRPK2 Frame_Shift_Del p.F595Nfs*15 0.41 TCGA-OR-A5LJ-01 7 107253834 107253834 C T BCAP29 Missense_Mutation p.S216L 0.44 deleterious(0.01) possibly_damaging(0.752) TCGA-OR-A5LJ-01 7 107820770 107820770 C T NRCAM Silent p.P916P 0.54 TCGA-OR-A5LJ-01 7 120971850 120971850 C T WNT16 Silent p.N155N 0.04 TCGA-OR-A5LJ-01 7 128843243 128843243 G A SMO Missense_Mutation p.R117H 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-OR-A5LJ-01 7 129832631 129832631 C T TMEM209 Silent p.P202P 0.04 TCGA-OR-A5LJ-01 7 137761290 137761290 G A AKR1D1 Missense_Mutation p.R9H 0.53 tolerated(0.12) benign(0.003) TCGA-OR-A5LJ-01 7 139796487 139796487 T A KDM7A Missense_Mutation p.T748S 0.40 tolerated(1) benign(0.001) TCGA-OR-A5LJ-01 7 143087734 143087734 G A ZYX Missense_Mutation p.V560M 0.10 deleterious(0) probably_damaging(0.995) TCGA-OR-A5LJ-01 7 143826996 143826996 G A OR2A14 Missense_Mutation p.R264H 0.39 tolerated(0.18) benign(0.011) TCGA-OR-A5LJ-01 7 144096190 144096190 G - NOBOX Frame_Shift_Del p.P441Hfs*25 0.42 TCGA-OR-A5LJ-01 7 150706627 150706627 G A NOS3 Silent p.A822A 0.47 TCGA-OR-A5LJ-01 7 150920935 150920935 G A ABCF2 Missense_Mutation p.A184V 0.42 tolerated(0.28) benign(0.008) TCGA-OR-A5LJ-01 7 156469120 156469120 G A RNF32 Missense_Mutation p.R287H 0.53 tolerated(0.81) benign(0) TCGA-OR-A5LJ-01 7 27147667 27147667 C - HOXA3 Frame_Shift_Del p.G400Vfs*104 0.49 TCGA-OR-A5LJ-01 7 27186864 27186866 CTT - HOXA6 Intron 0.46 TCGA-OR-A5LJ-01 7 27194956 27194956 C - HOXA7 Intron 0.14 TCGA-OR-A5LJ-01 7 29606205 29606205 G A PRR15 Missense_Mutation p.R87H 0.14 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 7 30491510 30491510 C - NOD1 Frame_Shift_Del p.G508Vfs*106 0.27 TCGA-OR-A5LJ-01 7 44839390 44839390 G A PPIA Silent p.T93T 0.53 TCGA-OR-A5LJ-01 7 45014805 45014805 C T MYO1G Missense_Mutation p.V196M 0.43 tolerated(0.12) probably_damaging(0.953) TCGA-OR-A5LJ-01 7 56125797 56125797 G A CCT6A Splice_Site p.X242_splice 0.11 TCGA-OR-A5LJ-01 7 6193968 6193968 C T USP42 Missense_Mutation p.A928V 0.59 tolerated(0.46) benign(0.002) TCGA-OR-A5LJ-01 7 63537844 63537844 T C ZNF727 Silent p.A139A 0.47 TCGA-OR-A5LJ-01 7 6550278 6550278 C T GRID2IP Missense_Mutation p.D539N 0.48 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LJ-01 7 73008706 73008709 CAAA - MLXIPL Frame_Shift_Del p.F779Sfs*37 0.52 TCGA-OR-A5LJ-01 7 75024750 75024750 C T TRIM73 5'Flank 0.46 TCGA-OR-A5LJ-01 7 75894124 75894126 AGA - SRRM3 In_Frame_Del p.K241del 0.09 TCGA-OR-A5LJ-01 7 76111983 76111983 G A DTX2 Missense_Mutation p.V143M 0.03 deleterious(0.01) probably_damaging(1) TCGA-OR-A5LJ-01 7 76634963 76634963 C T UPK3B Intron 0.50 TCGA-OR-A5LJ-01 7 76888378 76888378 A - CCDC146 Frame_Shift_Del p.V253* 0.10 TCGA-OR-A5LJ-01 7 86556094 86556096 AAG - KIAA1324L In_Frame_Del p.S409del 0.08 TCGA-OR-A5LJ-01 7 88964603 88964603 A G ZNF804B Missense_Mutation p.I769M 0.08 tolerated(0.36) benign(0.005) TCGA-OR-A5LJ-01 7 99701292 99701292 G A AP4M1 Missense_Mutation p.V174I 0.45 tolerated(0.63) benign(0.26) TCGA-OR-A5LJ-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.46 TCGA-OR-A5LJ-01 8 103297999 103297999 C T UBR5 Silent p.A1742A 0.44 TCGA-OR-A5LJ-01 8 106813889 106813889 C T ZFPM2 Nonsense_Mutation p.R527* 0.49 TCGA-OR-A5LJ-01 8 116616259 116616259 T C TRPS1 Missense_Mutation p.Y646C 0.05 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-OR-A5LJ-01 8 120101975 120101975 C T COLEC10 Missense_Mutation p.R69C 0.07 deleterious(0.01) possibly_damaging(0.713) TCGA-OR-A5LJ-01 8 121458716 121458716 T C MTBP Silent p.I54I 0.12 TCGA-OR-A5LJ-01 8 125015418 125015418 A G FER1L6 Missense_Mutation p.N511D 0.48 deleterious(0.05) benign(0.048) TCGA-OR-A5LJ-01 8 12880483 12880484 CT - KIAA1456 3'UTR 0.75 TCGA-OR-A5LJ-01 8 133913766 133913766 C T TG Missense_Mutation p.T1201M 0.50 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 8 139164439 139164439 C T FAM135B Missense_Mutation p.R760Q 0.26 tolerated(0.17) benign(0.104) TCGA-OR-A5LJ-01 8 140898200 140898200 C T TRAPPC9 Missense_Mutation p.R1091H 0.04 tolerated(0.12) possibly_damaging(0.46) TCGA-OR-A5LJ-01 8 145066998 145066998 G A GRINA Missense_Mutation p.A369T 0.78 tolerated(0.22) benign(0.301) TCGA-OR-A5LJ-01 8 145947714 145947714 C T ZNF251 Missense_Mutation p.R444Q 0.91 tolerated(0.45) benign(0.408) TCGA-OR-A5LJ-01 8 22447189 22447189 G A PDLIM2 Missense_Mutation p.R483Q 0.84 tolerated(0.07) benign(0.119) TCGA-OR-A5LJ-01 8 24167472 24167473 - A ADAM28 Frame_Shift_Ins p.N75Kfs*15 0.69 TCGA-OR-A5LJ-01 8 35608159 35608159 G A UNC5D Silent p.A665A 0.78 TCGA-OR-A5LJ-01 8 37702689 37702689 G A BRF2 Silent p.Y193Y 0.05 TCGA-OR-A5LJ-01 8 38067995 38067995 A - BAG4 Frame_Shift_Del p.G456Dfs*6 0.53 TCGA-OR-A5LJ-01 8 38162210 38162210 C T WHSC1L1 Missense_Mutation p.G836R 0.80 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 8 42823193 42823193 G C HOOK3 Missense_Mutation p.V320L 0.19 tolerated(0.39) benign(0.109) TCGA-OR-A5LJ-01 8 6371316 6371316 G A ANGPT2 Missense_Mutation p.S361L 0.82 deleterious(0.02) possibly_damaging(0.631) TCGA-OR-A5LJ-01 8 67049359 67049359 C T TRIM55 Silent p.L179L 0.19 TCGA-OR-A5LJ-01 8 86354416 86354416 C T CA3 Missense_Mutation p.A116V 0.14 deleterious(0) possibly_damaging(0.484) TCGA-OR-A5LJ-01 8 99146235 99146235 C T POP1 Missense_Mutation p.A265V 0.47 tolerated(0.12) benign(0.288) TCGA-OR-A5LJ-01 8 99441654 99441654 G T KCNS2 3'UTR 0.44 TCGA-OR-A5LJ-01 9 113431161 113431161 G A MUSK 5'UTR 0.45 TCGA-OR-A5LJ-01 9 113562990 113562990 C T MUSK Missense_Mutation p.R778C 0.43 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 9 123586958 123586958 C T PSMD5 Missense_Mutation p.V274M 0.49 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LJ-01 9 127998973 127998973 C A HSPA5 Missense_Mutation p.K621N 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.772) TCGA-OR-A5LJ-01 9 130479967 130479967 C T TTC16 Silent p.A114A 0.44 TCGA-OR-A5LJ-01 9 13119542 13119542 C T MPDZ Missense_Mutation p.V1780I 0.47 tolerated(0.06) probably_damaging(0.994) TCGA-OR-A5LJ-01 9 134340407 134340407 C A PRRC2B Silent p.P554P 0.06 TCGA-OR-A5LJ-01 9 136905382 136905382 C T BRD3 Missense_Mutation p.V473M 0.53 tolerated(0.08) probably_damaging(0.971) TCGA-OR-A5LJ-01 9 137623934 137623934 C T COL5A1 Silent p.G450G 0.40 TCGA-OR-A5LJ-01 9 137716657 137716657 G A COL5A1 Missense_Mutation p.R1637H 0.50 unknown(0) TCGA-OR-A5LJ-01 9 138396139 138396139 G A MRPS2 3'UTR 0.27 TCGA-OR-A5LJ-01 9 140114874 140114874 C T RNF208 3'UTR 0.46 TCGA-OR-A5LJ-01 9 140115250 140115250 C T RNF208 Missense_Mutation p.E139K 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-OR-A5LJ-01 9 140115251 140115251 G A RNF208 Silent p.G138G 0.12 TCGA-OR-A5LJ-01 9 140243597 140243597 G T EXD3 Missense_Mutation p.L599M 0.48 tolerated(0.26) possibly_damaging(0.726) TCGA-OR-A5LJ-01 9 140262422 140262422 G A EXD3 Missense_Mutation p.T161M 0.04 deleterious(0) benign(0.266) TCGA-OR-A5LJ-01 9 140343830 140343830 C T NSMF 3'UTR 0.41 TCGA-OR-A5LJ-01 9 140508572 140508572 G A ARRDC1 Missense_Mutation p.R175H 0.07 deleterious(0.01) possibly_damaging(0.523) TCGA-OR-A5LJ-01 9 140676778 140676778 C T EHMT1 Nonsense_Mutation p.Q771* 0.45 TCGA-OR-A5LJ-01 9 19063677 19063677 G A HAUS6 Intron 0.08 TCGA-OR-A5LJ-01 9 20881923 20881923 C T FOCAD Missense_Mutation p.R791C 0.53 deleterious(0) probably_damaging(1) TCGA-OR-A5LJ-01 9 21854738 21854738 C T MTAP Missense_Mutation p.R187C 0.19 deleterious(0) benign(0.084) TCGA-OR-A5LJ-01 9 26842344 26842344 C T CAAP1 Silent p.A347A 0.45 TCGA-OR-A5LJ-01 9 3263055 3263055 A C RFX3 Silent p.T495T 0.03 TCGA-OR-A5LJ-01 9 33056173 33056173 C T SMU1 Missense_Mutation p.E354K 0.50 tolerated(0.4) benign(0.022) TCGA-OR-A5LJ-01 9 34306345 34306345 G A KIF24 Missense_Mutation p.R240C 0.07 deleterious(0) probably_damaging(0.957) TCGA-OR-A5LJ-01 9 35813620 35813620 T C HINT2 Intron 0.45 TCGA-OR-A5LJ-01 9 71397248 71397248 T C FAM122A 3'UTR 0.12 TCGA-OR-A5LJ-01 9 79121301 79121301 A - GCNT1 3'UTR 0.45 TCGA-OR-A5LJ-01 9 80854984 80854984 G A CEP78 Missense_Mutation p.R100K 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-OR-A5LJ-01 9 84533292 84533292 C - SPATA31D5P RNA 0.52 TCGA-OR-A5LJ-01 9 87486854 87486854 C T NTRK2 Intron 0.44 TCGA-OR-A5LJ-01 9 90321154 90321154 G A DAPK1 Silent p.A1056A 0.05 TCGA-OR-A5LJ-01 9 94794822 94794822 C T SPTLC1 Silent p.T449T 0.42 TCGA-OR-A5LJ-01 9 98231105 98231105 G - PTCH1 Frame_Shift_Del p.C727Vfs*19 0.30 TCGA-OR-A5LJ-01 9 99489250 99489250 C T RP11-535M15.2 RNA 0.62 TCGA-OR-A5LJ-01 X 109695052 109695052 G C RGAG1 Missense_Mutation p.V403L 0.06 tolerated(0.14) benign(0.013) TCGA-OR-A5LJ-01 X 120183606 120183608 AAG - GLUD2 3'UTR 0.80 TCGA-OR-A5LJ-01 X 142717897 142717897 G A SLITRK4 Missense_Mutation p.P343L 0.84 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LJ-01 X 147090160 147090160 G T FMR1NB Missense_Mutation p.M187I 0.83 tolerated(0.15) benign(0.043) TCGA-OR-A5LJ-01 X 147733548 147733548 A - AFF2 Frame_Shift_Del p.R28Gfs*30 0.37 TCGA-OR-A5LJ-01 X 148797592 148797592 C T MAGEA11 Missense_Mutation p.A149V 0.82 tolerated(0.13) benign(0.125) TCGA-OR-A5LJ-01 X 149999704 149999704 G A CD99L2 Nonsense_Mutation p.Q44* 0.14 TCGA-OR-A5LJ-01 X 152815531 152815531 G A ATP2B3 Missense_Mutation p.R537H 0.84 deleterious(0.01) possibly_damaging(0.767) TCGA-OR-A5LJ-01 X 153669455 153669455 C A GDI1 Silent p.I244I 0.16 TCGA-OR-A5LJ-01 X 1546767 1546767 C T ASMTL Missense_Mutation p.A253T 0.84 tolerated(0.64) benign(0.001) TCGA-OR-A5LJ-01 X 38535027 38535027 C - TSPAN7 Frame_Shift_Del p.S173Afs*4 0.45 TCGA-OR-A5LJ-01 X 40518765 40518765 G A MED14 Missense_Mutation p.T1260M 0.04 deleterious(0) probably_damaging(0.971) TCGA-OR-A5LJ-01 X 41075161 41075161 G A USP9X Missense_Mutation p.V1781I 0.07 tolerated(0.06) probably_damaging(0.966) TCGA-OR-A5LJ-01 X 48826543 48826543 C T KCND1 Missense_Mutation p.V46M 0.85 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LJ-01 X 49047846 49047846 C A SYP Intron 0.09 TCGA-OR-A5LJ-01 X 50111937 50111937 G T DGKK RNA 0.38 TCGA-OR-A5LJ-01 X 50350688 50350690 CCT - SHROOM4 In_Frame_Del p.E1151del 0.73 TCGA-OR-A5LJ-01 X 65486456 65486456 G A HEPH Missense_Mutation p.R1194Q 0.04 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-OR-A5LJ-01 X 69774510 69774510 T C TEX11 Missense_Mutation p.T776A 0.20 tolerated(0.05) benign(0.143) TCGA-OR-A5LJ-01 X 70356163 70356163 G A MED12 Silent p.S1686S 0.82 TCGA-OR-A5LJ-01 X 70836820 70836820 C T CXCR3 Missense_Mutation p.V215M 0.08 tolerated(0.09) possibly_damaging(0.705) TCGA-OR-A5LJ-01 X 74636938 74636938 G A ZDHHC15 Silent p.N317N 0.77 TCGA-OR-A5LJ-01 X 77302169 77302169 G T ATP7A 3'UTR 0.27 TCGA-OR-A5LJ-01 X 7890071 7890071 G A PNPLA4 Silent p.P83P 0.84 TCGA-OR-A5LJ-01 X 84510411 84510413 ATC - ZNF711 In_Frame_Del p.I77del 0.17 TCGA-OR-A5LJ-01 X 8538724 8538724 G A KAL1 Missense_Mutation p.P293L 0.04 deleterious(0) possibly_damaging(0.5) TCGA-OR-A5LJ-01 X 8553424 8553424 C T KAL1 Missense_Mutation p.R247Q 0.78 tolerated(0.1) benign(0.018) TCGA-OR-A5LJ-01 X 91132408 91132408 C T PCDH11X Missense_Mutation p.A390V 0.84 tolerated(0.12) possibly_damaging(0.853) TCGA-OR-A5LJ-01 X 99905848 99905848 C T SRPX2 Missense_Mutation p.A50V 0.88 tolerated(0.3) benign(0.014) TCGA-OR-A5LK-01 10 116853707 116853707 C A ATRNL1 Silent p.T66T 0.40 TCGA-OR-A5LK-01 11 102562470 102562470 G T MMP27 3'UTR 0.20 TCGA-OR-A5LK-01 11 121490527 121490527 C G SORL1 Missense_Mutation p.D1930E 0.27 tolerated(0.06) possibly_damaging(0.849) TCGA-OR-A5LK-01 11 123848074 123848074 C G OR10S1 Missense_Mutation p.E109Q 0.12 tolerated(0.81) benign(0.003) TCGA-OR-A5LK-01 11 72438186 72438186 C T ARAP1 5'UTR 0.20 TCGA-OR-A5LK-01 11 9101018 9101018 C A SCUBE2 Missense_Mutation p.V99F 0.08 deleterious(0.01) probably_damaging(0.945) TCGA-OR-A5LK-01 11 99942451 99942451 G T CNTN5 Missense_Mutation p.M438I 0.13 tolerated(1) benign(0.002) TCGA-OR-A5LK-01 12 112590550 112590550 C G TRAFD1 Silent p.S568S 0.05 TCGA-OR-A5LK-01 12 40012643 40012643 G T ABCD2 Missense_Mutation p.L259I 0.32 tolerated(0.69) benign(0.122) TCGA-OR-A5LK-01 12 5025461 5025461 C A KCNA1 3'UTR 0.17 TCGA-OR-A5LK-01 14 31926599 31926599 T C DTD2 Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-OR-A5LK-01 14 68086672 68086672 G T ARG2 5'UTR 0.08 TCGA-OR-A5LK-01 15 33149251 33149251 G T FMN1 Missense_Mutation p.P1075H 0.19 deleterious(0) probably_damaging(1) TCGA-OR-A5LK-01 15 44964347 44964347 C A PATL2 Missense_Mutation p.A175S 0.15 tolerated(0.21) possibly_damaging(0.612) TCGA-OR-A5LK-01 17 19582079 19582079 G A SLC47A2 Missense_Mutation p.R577C 0.07 deleterious(0) probably_damaging(1) TCGA-OR-A5LK-01 17 80361861 80361861 C T OGFOD3 Silent p.T217T 0.08 TCGA-OR-A5LK-01 18 7013829 7013829 C T LAMA1 Silent p.G1116G 0.07 TCGA-OR-A5LK-01 19 12996235 12996235 G A KLF1 Missense_Mutation p.S270L 0.14 deleterious(0.02) probably_damaging(0.953) TCGA-OR-A5LK-01 19 45815122 45815122 T C CKM Missense_Mutation p.T180A 0.15 deleterious(0) benign(0.052) TCGA-OR-A5LK-01 19 47492807 47492807 A G ARHGAP35 Missense_Mutation p.N1304S 0.14 tolerated(0.41) benign(0) TCGA-OR-A5LK-01 19 53959137 53959137 G A ZNF761 RNA 0.18 TCGA-OR-A5LK-01 19 55995158 55995158 G A ZNF628 Silent p.Q866Q 0.34 TCGA-OR-A5LK-01 19 7689283 7689283 C T XAB2 Missense_Mutation p.D291N 0.06 deleterious(0) probably_damaging(1) TCGA-OR-A5LK-01 1 175365862 175365862 G A TNR Missense_Mutation p.T353M 0.12 deleterious(0) probably_damaging(0.986) TCGA-OR-A5LK-01 1 182499457 182499457 C T RGSL1 Missense_Mutation p.T735M 0.50 tolerated(0.51) benign(0.006) TCGA-OR-A5LK-01 1 186092228 186092228 G C HMCN1 Missense_Mutation p.Q4125H 0.30 probably_damaging(0.997) TCGA-OR-A5LK-01 1 201489304 201489304 C A RPS10P7 RNA 0.18 TCGA-OR-A5LK-01 1 20828581 20828581 T C MUL1 Missense_Mutation p.N104D 0.19 deleterious(0.01) probably_damaging(1) TCGA-OR-A5LK-01 1 22182300 22182300 G A HSPG2 Missense_Mutation p.T1894M 0.66 benign(0.149) TCGA-OR-A5LK-01 20 2582894 2582894 C T TMC2 Nonsense_Mutation p.R454* 0.04 TCGA-OR-A5LK-01 20 30418931 30418931 A C MYLK2 Missense_Mutation p.I471L 0.04 deleterious(0.02) possibly_damaging(0.738) TCGA-OR-A5LK-01 22 31667154 31667154 G A LIMK2 Silent p.R429R 0.08 TCGA-OR-A5LK-01 2 162820668 162820668 C T SLC4A10 Silent p.F962F 0.19 TCGA-OR-A5LK-01 2 70918047 70918047 C A ADD2 Missense_Mutation p.K240N 0.04 deleterious(0) probably_damaging(0.96) TCGA-OR-A5LK-01 3 140401765 140401765 C T TRIM42 Missense_Mutation p.S268L 0.07 deleterious(0.02) benign(0.113) TCGA-OR-A5LK-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.20 tolerated(0.11) possibly_damaging(0.529) TCGA-OR-A5LK-01 3 186504550 186504550 G T EIF4A2 Intron 0.05 TCGA-OR-A5LK-01 3 44285176 44285176 A C TOPAZ1 Missense_Mutation p.D393A 0.28 tolerated(0.06) benign(0.027) TCGA-OR-A5LK-01 3 97869140 97869140 T C OR5H14 Missense_Mutation p.M304T 0.08 tolerated(0.12) benign(0.001) TCGA-OR-A5LK-01 4 160275135 160275135 A G RAPGEF2 Missense_Mutation p.T1369A 0.34 tolerated_low_confidence(0.78) benign(0) TCGA-OR-A5LK-01 4 71657160 71657160 C A RUFY3 Intron 0.17 TCGA-OR-A5LK-01 4 73012700 73012700 A G NPFFR2 Missense_Mutation p.Q247R 0.15 tolerated(1) benign(0.002) TCGA-OR-A5LK-01 4 94376818 94376818 C T GRID2 Silent p.A517A 0.14 TCGA-OR-A5LK-01 5 127863580 127863580 T A FBN2 Missense_Mutation p.T173S 0.11 tolerated(0.24) benign(0.292) TCGA-OR-A5LK-01 5 132197395 132197395 C T GDF9 Silent p.P417P 0.06 TCGA-OR-A5LK-01 5 134022586 134022586 T A SEC24A Missense_Mutation p.L533Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LK-01 5 13845019 13845019 G A DNAH5 Missense_Mutation p.S1733L 0.05 possibly_damaging(0.651) TCGA-OR-A5LK-01 5 148624490 148624490 C G ABLIM3 Missense_Mutation p.S466R 0.35 tolerated(0.33) benign(0.001) TCGA-OR-A5LK-01 6 117622297 117622297 C T ROS1 Nonsense_Mutation p.W2191* 0.05 TCGA-OR-A5LK-01 6 136913613 136913613 T C MAP3K5 Silent p.G1006G 0.04 TCGA-OR-A5LK-01 6 152832157 152832157 G T SYNE1 Missense_Mutation p.L131I 0.11 probably_damaging(0.999) TCGA-OR-A5LK-01 6 153315693 153315693 G C MTRF1L Silent p.V214V 0.04 TCGA-OR-A5LK-01 6 160450598 160450598 G A IGF2R Missense_Mutation p.V265M 0.04 tolerated(0.26) benign(0.139) TCGA-OR-A5LK-01 6 22569746 22569746 G A HDGFL1 5'Flank 0.13 TCGA-OR-A5LK-01 6 65622395 65622395 G A EYS Missense_Mutation p.H875Y 0.12 tolerated(1) benign(0.001) TCGA-OR-A5LK-01 6 96655832 96655832 A T FUT9 3'UTR 0.12 TCGA-OR-A5LK-01 7 157333452 157333452 C T PTPRN2 Missense_Mutation p.V1002M 0.07 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LK-01 7 28997847 28997847 C G AC005013.5 Intron 0.19 TCGA-OR-A5LK-01 7 29519803 29519803 G A CHN2 Intron 0.18 TCGA-OR-A5LK-01 7 92164285 92164285 G T RBM48 Splice_Site p.X339_splice 0.11 TCGA-OR-A5LK-01 7 98581870 98581870 G C TRRAP Silent p.R3063R 0.07 TCGA-OR-A5LK-01 8 25708132 25708132 G A EBF2 Silent p.S558S 0.12 TCGA-OR-A5LK-01 8 39634610 39634610 A T ADAM2 Missense_Mutation p.I321N 0.10 deleterious(0) probably_damaging(0.972) TCGA-OR-A5LK-01 8 42586825 42586825 C A CHRNB3 Missense_Mutation p.F125L 0.58 deleterious(0) probably_damaging(1) TCGA-OR-A5LK-01 8 52321748 52321748 G A PXDNL Silent p.H812H 0.18 TCGA-OR-A5LK-01 X 18822065 18822065 C T PPEF1 Missense_Mutation p.T374M 0.17 deleterious(0.01) probably_damaging(0.938) TCGA-OR-A5LK-01 X 49646763 49646763 G A USP27X 3'UTR 0.05 TCGA-OR-A5LK-01 X 9656179 9656180 - GCG TBL1X In_Frame_Ins p.A168dup 0.35 TCGA-OR-A5LL-01 10 98799839 98799839 G A SLIT1 Missense_Mutation p.P735S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-OR-A5LL-01 11 108236049 108236049 T C ATM Intron 0.23 TCGA-OR-A5LL-01 11 66636324 66636324 T C PC Missense_Mutation p.I339V 0.08 tolerated(0.35) benign(0.252) TCGA-OR-A5LL-01 12 108051566 108051566 A T BTBD11 3'UTR 0.26 TCGA-OR-A5LL-01 12 56215846 56215846 G A DNAJC14 Missense_Mutation p.A675V 0.46 deleterious(0.04) benign(0.054) TCGA-OR-A5LL-01 12 56231788 56231788 G A MMP19 Missense_Mutation p.P300L 0.25 tolerated(0.07) possibly_damaging(0.907) TCGA-OR-A5LL-01 12 57922471 57922471 A C MBD6 Missense_Mutation p.K948T 0.08 tolerated_low_confidence(0.12) possibly_damaging(0.888) TCGA-OR-A5LL-01 12 65448919 65448919 G T WIF1 Missense_Mutation p.H333N 0.07 tolerated(0.09) benign(0.013) TCGA-OR-A5LL-01 13 103498624 103498624 T A ERCC5 Missense_Mutation p.V3D 0.65 deleterious(0) probably_damaging(1) TCGA-OR-A5LL-01 14 23345363 23345363 C T LRP10 Silent p.G402G 0.13 TCGA-OR-A5LL-01 14 70926008 70926008 A C ADAM21 Silent p.R598R 0.46 TCGA-OR-A5LL-01 14 74411292 74411292 T A FAM161B Missense_Mutation p.H287L 0.42 deleterious(0.01) probably_damaging(0.965) TCGA-OR-A5LL-01 15 39545545 39545545 T G C15orf54 3'UTR 0.25 TCGA-OR-A5LL-01 15 74335395 74335395 C T PML Silent p.T592T 0.12 TCGA-OR-A5LL-01 16 2506732 2506732 G A CCNF Missense_Mutation p.R691Q 0.21 tolerated_low_confidence(0.28) benign(0.001) TCGA-OR-A5LL-01 17 17723076 17723076 T G SREBF1 Intron 0.42 TCGA-OR-A5LL-01 17 39845178 39845178 C T EIF1 5'UTR 0.62 TCGA-OR-A5LL-01 17 5424256 5424256 C T NLRP1 Missense_Mutation p.G1287D 0.86 deleterious(0) probably_damaging(1) TCGA-OR-A5LL-01 17 72470793 72470793 C A CD300A Missense_Mutation p.Q168K 0.18 tolerated(0.22) benign(0.107) TCGA-OR-A5LL-01 19 10823651 10823651 G A QTRT1 Missense_Mutation p.A332T 0.08 tolerated(0.46) benign(0.005) TCGA-OR-A5LL-01 19 18966869 18966869 C G UPF1 Silent p.A560A 0.19 TCGA-OR-A5LL-01 19 5707755 5707755 T G LONP1 Missense_Mutation p.T339P 0.15 deleterious(0.04) benign(0.248) TCGA-OR-A5LL-01 1 12939507 12939507 C G PRAMEF4 Missense_Mutation p.R432T 0.25 deleterious(0.04) probably_damaging(0.962) TCGA-OR-A5LL-01 1 158641186 158641186 G A SPTA1 Nonsense_Mutation p.Q516* 0.04 TCGA-OR-A5LL-01 1 158644356 158644356 G A SPTA1 Silent p.L408L 0.06 TCGA-OR-A5LL-01 1 159410014 159410014 G T OR10J1 Missense_Mutation p.V156F 0.10 deleterious(0.01) possibly_damaging(0.707) TCGA-OR-A5LL-01 1 171254505 171254505 G A FMO1 Missense_Mutation p.R474H 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-OR-A5LL-01 1 185956605 185956605 A G HMCN1 Missense_Mutation p.I993V 0.06 benign(0.01) TCGA-OR-A5LL-01 1 205797785 205797785 G C PM20D1 Missense_Mutation p.T491R 0.16 tolerated(0.49) benign(0.008) TCGA-OR-A5LL-01 1 247587746 247587746 G A NLRP3 Missense_Mutation p.S334N 0.36 deleterious(0) probably_damaging(0.988) TCGA-OR-A5LL-01 1 34276428 34276428 G A CSMD2 Silent p.G414G 0.36 TCGA-OR-A5LL-01 20 31671359 31671359 G A BPIFB4 Missense_Mutation p.R119Q 0.07 tolerated_low_confidence(0.08) benign(0.004) TCGA-OR-A5LL-01 20 55206414 55206414 G A TFAP2C Missense_Mutation p.A68T 0.05 tolerated(0.35) benign(0.001) TCGA-OR-A5LL-01 20 56090847 56090847 C T CTCFL Missense_Mutation p.R368H 0.10 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LL-01 21 34399459 34399459 G A OLIG2 Missense_Mutation p.D97N 0.20 tolerated(0.26) probably_damaging(0.972) TCGA-OR-A5LL-01 22 37602543 37602543 G A SSTR3 3'UTR 0.24 TCGA-OR-A5LL-01 22 51208398 51208399 - A RABL2B Frame_Shift_Ins p.W115Lfs*20 0.22 TCGA-OR-A5LL-01 2 135965341 135965341 G A ZRANB3 Missense_Mutation p.T891I 0.42 tolerated(0.28) benign(0.002) TCGA-OR-A5LL-01 2 201719353 201719353 C T CLK1 Missense_Mutation p.M444I 0.12 deleterious(0.01) possibly_damaging(0.887) TCGA-OR-A5LL-01 2 225266236 225266236 G A FAM124B Missense_Mutation p.R84C 0.18 deleterious(0) probably_damaging(0.911) TCGA-OR-A5LL-01 2 239059526 239059526 C T KLHL30 Silent p.G519G 0.12 TCGA-OR-A5LL-01 2 74588719 74588719 C T DCTN1 Silent p.V1248V 0.17 TCGA-OR-A5LL-01 2 84924798 84924798 G T DNAH6 Missense_Mutation p.A2542S 0.11 tolerated(0.37) benign(0.219) TCGA-OR-A5LL-01 3 108407467 108407467 A G DZIP3 Missense_Mutation p.N1100D 0.52 tolerated(0.69) benign(0.001) TCGA-OR-A5LL-01 3 148896230 148896230 C G CP Missense_Mutation p.E950D 0.20 tolerated(0.41) benign(0.001) TCGA-OR-A5LL-01 3 164908554 164908554 G A SLITRK3 Missense_Mutation p.T22I 0.21 deleterious(0.01) benign(0.386) TCGA-OR-A5LL-01 3 38601635 38601636 - A SCN5A Intron 0.22 TCGA-OR-A5LL-01 4 39310527 39310528 - A RFC1 Frame_Shift_Ins p.L538Ffs*24 0.10 TCGA-OR-A5LL-01 4 40337918 40337918 C T CHRNA9 Missense_Mutation p.R47C 0.06 deleterious(0) probably_damaging(0.994) TCGA-OR-A5LL-01 4 79328954 79328954 C T FRAS1 Missense_Mutation p.H1423Y 0.34 possibly_damaging(0.833) TCGA-OR-A5LL-01 5 121405754 121405754 A C LOX Missense_Mutation p.I414S 0.06 deleterious(0) possibly_damaging(0.824) TCGA-OR-A5LL-01 5 125939673 125939673 G C PHAX Missense_Mutation p.D170H 0.06 tolerated(0.07) benign(0.117) TCGA-OR-A5LL-01 5 125939735 125939735 G C PHAX Missense_Mutation p.E190D 0.07 tolerated(0.13) benign(0.038) TCGA-OR-A5LL-01 5 133745680 133745680 G C CDKN2AIPNL Missense_Mutation p.L85V 0.08 tolerated(0.75) possibly_damaging(0.795) TCGA-OR-A5LL-01 5 137056267 137056267 C T KLHL3 Silent p.K7K 0.13 TCGA-OR-A5LL-01 5 140731780 140731780 C T PCDHGB1 Silent p.S651S 0.22 TCGA-OR-A5LL-01 5 140741378 140741378 C T PCDHGB2 Missense_Mutation p.A559V 0.14 tolerated(0.09) possibly_damaging(0.848) TCGA-OR-A5LL-01 5 60240999 60240999 G T NDUFAF2 5'UTR 0.31 TCGA-OR-A5LL-01 6 102511871 102511871 C A GRIK2 Intron 0.23 TCGA-OR-A5LL-01 6 20488470 20488470 G A E2F3 Missense_Mutation p.A376T 0.17 tolerated(0.76) benign(0.002) TCGA-OR-A5LL-01 6 27925596 27925596 C T OR2B6 Missense_Mutation p.T193I 0.43 deleterious(0.03) benign(0.03) TCGA-OR-A5LL-01 7 64498804 64498804 C T CCT6P3 RNA 0.35 TCGA-OR-A5LL-01 8 101016248 101016248 G A RGS22 Missense_Mutation p.P845S 0.18 tolerated(0.06) probably_damaging(0.93) TCGA-OR-A5LL-01 8 133090151 133090151 G A HHLA1 Silent p.S367S 0.47 TCGA-OR-A5LL-01 9 137710730 137710730 G A COL5A1 Missense_Mutation p.G1459S 0.09 unknown(0) TCGA-OR-A5LL-01 9 5754924 5754924 A G KIAA1432 Silent p.Q562Q 0.18 TCGA-OR-A5LL-01 9 80919786 80919786 T G PSAT1 Silent p.A109A 0.07 TCGA-OR-A5LL-01 X 101818323 101818323 C G NXF4 RNA 0.17 TCGA-OR-A5LL-01 X 107457358 107457358 C A COL4A6 Missense_Mutation p.G143V 0.37 unknown(0) TCGA-OR-A5LL-01 X 150349287 150349287 C G GPR50 Missense_Mutation p.S411C 0.20 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-OR-A5LL-01 X 30261536 30261536 A G MAGEB4 3'UTR 0.27 TCGA-OR-A5LL-01 X 49957052 49957052 T C AKAP4 Missense_Mutation p.Q771R 0.13 deleterious(0.04) probably_damaging(0.996) TCGA-OR-A5LL-01 X 50377344 50377344 G A SHROOM4 Missense_Mutation p.R577C 0.22 deleterious(0) probably_damaging(1) TCGA-OR-A5LL-01 X 55284861 55284861 G A PAGE3 3'Flank 0.42 TCGA-OR-A5LL-01 X 78616969 78616969 C A ITM2A Missense_Mutation p.R187I 0.18 deleterious(0.02) benign(0.139) TCGA-OR-A5LM-01 10 70191667 70191667 G A DNA2 Silent p.L731L 0.47 TCGA-OR-A5LM-01 11 111782365 111782365 G T CRYAB Missense_Mutation p.F28L 0.20 tolerated(0.06) benign(0.419) TCGA-OR-A5LM-01 11 111782366 111782366 A T CRYAB Missense_Mutation p.F28Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-OR-A5LM-01 12 121176680 121176680 G A ACADS Missense_Mutation p.A331T 0.11 deleterious(0) probably_damaging(1) TCGA-OR-A5LM-01 12 121206275 121206275 T C SPPL3 Missense_Mutation p.Y209C 0.34 deleterious(0.02) probably_damaging(0.976) TCGA-OR-A5LM-01 12 133378462 133378462 G A GOLGA3 Missense_Mutation p.S564L 0.54 tolerated(0.08) probably_damaging(0.999) TCGA-OR-A5LM-01 12 26774092 26774092 C T ITPR2 Silent p.G1142G 0.25 TCGA-OR-A5LM-01 13 23824816 23824816 G A SGCG Silent p.A115A 0.25 TCGA-OR-A5LM-01 13 84456197 84456197 G A SLITRK1 5'UTR 0.19 TCGA-OR-A5LM-01 16 4794972 4794972 G A C16orf71 Missense_Mutation p.D335N 0.17 tolerated(0.15) benign(0.001) TCGA-OR-A5LM-01 16 70176291 70176291 G A PDPR Silent p.K490K 0.09 TCGA-OR-A5LM-01 16 88872235 88872235 A T CDT1 Missense_Mutation p.R264W 0.19 deleterious(0) possibly_damaging(0.737) TCGA-OR-A5LM-01 17 47699369 47699369 C G SPOP Missense_Mutation p.E47Q 0.15 tolerated(0.08) probably_damaging(0.97) TCGA-OR-A5LM-01 1 118168098 118168098 A G FAM46C 3'UTR 0.22 TCGA-OR-A5LM-01 1 244220138 244220138 G T ZBTB18 3'UTR 0.04 TCGA-OR-A5LM-01 1 52385663 52385663 C G RAB3B Missense_Mutation p.G199A 0.05 tolerated(0.31) benign(0.003) TCGA-OR-A5LM-01 3 132179925 132179925 C T DNAJC13 Missense_Mutation p.S530L 0.15 deleterious(0.01) benign(0.223) TCGA-OR-A5LM-01 3 173998498 173998498 C A NLGN1 Missense_Mutation p.T626K 0.23 tolerated(0.05) probably_damaging(0.99) TCGA-OR-A5LM-01 3 195511073 195511073 C T MUC4 Missense_Mutation p.G2460S 0.07 unknown(0) TCGA-OR-A5LM-01 3 51812856 51812856 A G IQCF6 Missense_Mutation p.L36P 0.23 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LM-01 3 62177191 62177191 C T PTPRG Missense_Mutation p.T361M 0.24 deleterious(0) probably_damaging(0.971) TCGA-OR-A5LM-01 4 114274428 114274428 G A ANK2 Missense_Mutation p.V1552I 0.13 possibly_damaging(0.742) TCGA-OR-A5LM-01 4 48139493 48139493 G A TEC Silent p.F612F 0.29 TCGA-OR-A5LM-01 5 156479482 156479482 G A HAVCR1 Missense_Mutation p.T188M 0.09 deleterious(0.03) unknown(0) TCGA-OR-A5LM-01 5 5303488 5303488 C A ADAMTS16 Missense_Mutation p.P966Q 0.19 tolerated(0.58) benign(0.006) TCGA-OR-A5LM-01 6 101173535 101173535 C G ASCC3 Missense_Mutation p.K594N 0.16 deleterious(0) probably_damaging(0.929) TCGA-OR-A5LM-01 7 103008174 103008174 A T PSMC2 Silent p.I354I 0.31 TCGA-OR-A5LM-01 8 124157074 124157074 G T TBC1D31 Missense_Mutation p.A985S 0.08 tolerated(0.16) benign(0.009) TCGA-OR-A5LM-01 8 37704589 37704589 G A BRF2 Nonsense_Mutation p.R107* 0.20 TCGA-OR-A5LM-01 X 135750134 135750134 C T ARHGEF6 3'UTR 0.39 TCGA-OR-A5LM-01 X 22129587 22129587 C T PHEX Missense_Mutation p.T361I 0.21 deleterious(0.01) benign(0.248) TCGA-OR-A5LM-01 X 35944286 35944286 G C CXorf22 Splice_Site p.X134_splice 0.21 TCGA-OR-A5LN-01 10 131969900 131969900 G T GLRX3 Missense_Mutation p.G275V 0.10 deleterious(0) possibly_damaging(0.807) TCGA-OR-A5LN-01 10 51974561 51974561 C T ASAH2 Missense_Mutation p.R361H 0.12 tolerated(1) benign(0.001) TCGA-OR-A5LN-01 11 4567166 4567166 G C OR52M1 Missense_Mutation p.C249S 0.26 deleterious(0.02) benign(0.126) TCGA-OR-A5LN-01 12 54778302 54778302 C T ZNF385A Silent p.P19P 0.14 TCGA-OR-A5LN-01 14 81737202 81737202 G T STON2 Missense_Mutation p.H809N 0.39 deleterious(0) probably_damaging(0.98) TCGA-OR-A5LN-01 14 88652129 88652129 C T KCNK10 Missense_Mutation p.R461K 0.33 deleterious_low_confidence(0.04) benign(0.022) TCGA-OR-A5LN-01 16 31045124 31045124 G - STX4 5'UTR 0.20 TCGA-OR-A5LN-01 17 41170156 41170156 G C VAT1 Silent p.A221A 0.05 TCGA-OR-A5LN-01 17 49338205 49338205 T C UTP18 Missense_Mutation p.V87A 0.05 tolerated(0.83) benign(0) TCGA-OR-A5LN-01 19 52132662 52132662 G A SIGLEC5 Missense_Mutation p.R217C 0.41 deleterious(0.03) possibly_damaging(0.641) TCGA-OR-A5LN-01 1 109289326 109289326 A G STXBP3 5'UTR 0.20 TCGA-OR-A5LN-01 3 63649755 63649755 T C SNTN Missense_Mutation p.V143A 0.06 tolerated(0.33) benign(0.009) TCGA-OR-A5LN-01 5 101816044 101816044 G A SLCO6A1 Silent p.Y151Y 0.25 TCGA-OR-A5LN-01 6 168479799 168479799 G A FRMD1 5'UTR 0.25 TCGA-OR-A5LN-01 7 32526800 32526800 A T LSM5 3'UTR 0.10 TCGA-OR-A5LN-01 8 140715144 140715144 G C KCNK9 Missense_Mutation p.S31W 0.18 deleterious(0) probably_damaging(0.994) TCGA-OR-A5LN-01 9 90499864 90499864 C A SPATA31E1 Missense_Mutation p.H154Q 0.19 deleterious(0.04) probably_damaging(0.966) TCGA-OR-A5LN-01 X 27999220 27999220 C G DCAF8L1 Missense_Mutation p.D78H 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.603) TCGA-OR-A5LO-01 10 105330702 105330702 G T NEURL1 Silent p.L53L 0.25 TCGA-OR-A5LO-01 10 118307963 118307963 G A PNLIP Missense_Mutation p.G98E 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-OR-A5LO-01 10 124089066 124089066 G A BTBD16 Missense_Mutation p.R328H 0.39 deleterious(0.01) benign(0.337) TCGA-OR-A5LO-01 10 131639127 131639127 G A EBF3 Silent p.S505S 0.23 TCGA-OR-A5LO-01 10 24909959 24909959 T C ARHGAP21 Missense_Mutation p.N289D 0.21 tolerated(0.31) benign(0.139) TCGA-OR-A5LO-01 10 31810238 31810238 A C ZEB1 Missense_Mutation p.N660H 0.31 tolerated(0.21) benign(0.212) TCGA-OR-A5LO-01 10 8006163 8006163 A G TAF3 Silent p.P230P 0.20 TCGA-OR-A5LO-01 11 40136210 40136210 C G LRRC4C Missense_Mutation p.V545L 0.07 tolerated(0.14) benign(0.026) TCGA-OR-A5LO-01 11 47810099 47810099 G C NUP160 Missense_Mutation p.I1192M 0.06 tolerated(0.09) benign(0.114) TCGA-OR-A5LO-01 11 73957234 73957234 A G PPME1 Silent p.K316K 0.95 TCGA-OR-A5LO-01 12 129100821 129100821 G A TMEM132C Missense_Mutation p.A416T 0.30 tolerated(0.15) benign(0.021) TCGA-OR-A5LO-01 12 15823815 15823815 G A EPS8 Missense_Mutation p.S60L 0.25 tolerated(0.06) benign(0.345) TCGA-OR-A5LO-01 12 21033786 21033786 C T SLCO1B3 Intron 0.17 TCGA-OR-A5LO-01 12 52980754 52980754 C T KRT72 Missense_Mutation p.E441K 0.20 deleterious(0) benign(0.443) TCGA-OR-A5LO-01 12 54677695 54677695 G C HNRNPA1 Missense_Mutation p.R336T 0.22 deleterious(0) unknown(0) TCGA-OR-A5LO-01 12 56151267 56151267 G A SARNP 3'UTR 0.25 TCGA-OR-A5LO-01 12 7531782 7531782 C A CD163L1 Missense_Mutation p.M721I 0.20 tolerated(0.09) benign(0.002) TCGA-OR-A5LO-01 14 102028383 102028383 G T DIO3 Missense_Mutation p.V184F 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-OR-A5LO-01 14 81209477 81209477 G C CEP128 Silent p.L916L 0.20 TCGA-OR-A5LO-01 15 75782617 75782617 G C PTPN9 Missense_Mutation p.R332G 0.48 deleterious(0) possibly_damaging(0.898) TCGA-OR-A5LO-01 16 14761544 14761544 C A BFAR Missense_Mutation p.L405I 0.45 tolerated(0.2) benign(0.071) TCGA-OR-A5LO-01 16 1825723 1825723 T C EME2 Intron 0.28 TCGA-OR-A5LO-01 16 52473370 52473370 G C TOX3 Missense_Mutation p.Q500E 0.19 deleterious_low_confidence(0) unknown(0) TCGA-OR-A5LO-01 16 67963838 67963838 C G CTRL Nonstop_Mutation p.*265Sext*35 0.24 TCGA-OR-A5LO-01 17 42989105 42989105 C A GFAP Nonsense_Mutation p.E281* 0.82 TCGA-OR-A5LO-01 17 66521052 66521052 G A PRKAR1A Splice_Site p.X168_splice 0.52 TCGA-OR-A5LO-01 17 68173458 68173458 T A KCNJ2 3'UTR 0.81 TCGA-OR-A5LO-01 17 80203876 80203876 C G CSNK1D Intron 0.94 TCGA-OR-A5LO-01 19 11234004 11234004 G C LDLR Silent p.V765V 0.19 TCGA-OR-A5LO-01 19 12918306 12918306 G T RNASEH2A Missense_Mutation p.V133L 0.45 deleterious(0.03) benign(0.208) TCGA-OR-A5LO-01 19 13063541 13063541 G A RAD23A Silent p.L284L 0.23 TCGA-OR-A5LO-01 19 3538705 3538705 C T MFSD12 3'UTR 0.43 TCGA-OR-A5LO-01 19 4361787 4361787 A C SH3GL1 Missense_Mutation p.L306R 0.14 tolerated(0.14) benign(0.004) TCGA-OR-A5LO-01 19 44832623 44832623 G C ZNF112 Missense_Mutation p.Q569E 0.12 deleterious(0.02) benign(0.217) TCGA-OR-A5LO-01 19 46176189 46176189 C T GIPR Missense_Mutation p.P121S 0.20 tolerated(0.63) probably_damaging(0.913) TCGA-OR-A5LO-01 19 47278856 47278856 G C SLC1A5 Missense_Mutation p.P513A 0.13 tolerated(0.39) benign(0.002) TCGA-OR-A5LO-01 19 54313435 54313435 G A NLRP12 Missense_Mutation p.A493V 0.15 deleterious(0.04) benign(0.424) TCGA-OR-A5LO-01 19 56226564 56226564 G C NLRP9 Silent p.V786V 0.18 TCGA-OR-A5LO-01 19 58579299 58579299 C A ZNF135 Missense_Mutation p.Q507K 0.21 tolerated(0.21) probably_damaging(0.986) TCGA-OR-A5LO-01 19 8316107 8316107 C T CERS4 Silent p.L49L 0.05 TCGA-OR-A5LO-01 19 9066010 9066010 C G MUC16 Missense_Mutation p.E7146Q 0.44 unknown(0) TCGA-OR-A5LO-01 1 117618146 117618146 C G TTF2 Missense_Mutation p.Q314E 0.47 tolerated(0.35) benign(0.053) TCGA-OR-A5LO-01 1 145441200 145441202 CAA - TXNIP In_Frame_Del p.N389del 0.24 TCGA-OR-A5LO-01 1 155006463 155006463 G A DCST1 5'UTR 0.89 TCGA-OR-A5LO-01 1 169292366 169292366 A G NME7 Silent p.S89S 0.40 TCGA-OR-A5LO-01 1 176679229 176679229 C G PAPPA2 Missense_Mutation p.Q1190E 0.42 deleterious(0) possibly_damaging(0.585) TCGA-OR-A5LO-01 1 205592890 205592890 C A ELK4 Missense_Mutation p.V41L 0.44 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LO-01 1 247319814 247319814 T C ZNF124 3'UTR 0.36 TCGA-OR-A5LO-01 1 249211953 249211953 G C PGBD2 Silent p.L390L 0.38 TCGA-OR-A5LO-01 1 40539638 40539638 G C PPT1 3'UTR 0.40 TCGA-OR-A5LO-01 20 62327249 62327249 G C RTEL1 3'UTR 0.74 TCGA-OR-A5LO-01 20 9538346 9538346 G T PAK7 Nonsense_Mutation p.S551* 0.39 TCGA-OR-A5LO-01 21 37505228 37505228 C G CBR3 5'Flank 0.43 TCGA-OR-A5LO-01 21 44185575 44185575 G C PDE9A Missense_Mutation p.D443H 0.27 deleterious(0) probably_damaging(0.953) TCGA-OR-A5LO-01 21 46707762 46707762 G A POFUT2 Silent p.L9L 0.37 TCGA-OR-A5LO-01 22 16449102 16449102 G C OR11H1 Missense_Mutation p.L235V 0.30 deleterious(0) probably_damaging(0.96) TCGA-OR-A5LO-01 22 31523888 31523888 G C INPP5J Intron 0.62 TCGA-OR-A5LO-01 2 120640081 120640081 G A PTPN4 Missense_Mutation p.E157K 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5LO-01 2 179581920 179581920 G A TTN Missense_Mutation p.T8514I 0.48 TCGA-OR-A5LO-01 2 204305290 204305290 G C RAPH1 Missense_Mutation p.P875A 0.68 possibly_damaging(0.811) TCGA-OR-A5LO-01 2 210705361 210705361 C A UNC80 Missense_Mutation p.Q1118K 0.07 probably_damaging(0.915) TCGA-OR-A5LO-01 2 227729481 227729481 C T RHBDD1 Silent p.I24I 0.40 TCGA-OR-A5LO-01 2 239079640 239079640 G T ILKAP Missense_Mutation p.L328I 0.46 deleterious(0) probably_damaging(1) TCGA-OR-A5LO-01 2 96553851 96553851 G C ANKRD36C Missense_Mutation p.P20A 0.26 tolerated_low_confidence(0.11) benign(0.087) TCGA-OR-A5LO-01 2 96557587 96557587 C - ANKRD36C Frame_Shift_Del p.G347Afs*2 0.23 TCGA-OR-A5LO-01 3 127800068 127800068 C G RUVBL1 3'UTR 0.45 TCGA-OR-A5LO-01 3 19479653 19479653 C A KCNH8 Intron 0.51 TCGA-OR-A5LO-01 3 57130282 57130282 C G IL17RD 3'UTR 0.50 TCGA-OR-A5LO-01 4 119626935 119626935 G A METTL14 Missense_Mutation p.R342K 0.23 tolerated(0.08) probably_damaging(0.982) TCGA-OR-A5LO-01 4 165962195 165962195 G A TRIM60 Missense_Mutation p.R324Q 0.22 tolerated(1) benign(0.001) TCGA-OR-A5LO-01 4 184562440 184562440 T G RWDD4 3'UTR 0.16 TCGA-OR-A5LO-01 4 70802862 70802862 G T CSN1S1 Missense_Mutation p.Q73H 0.18 deleterious(0.01) benign(0.03) TCGA-OR-A5LO-01 4 70810573 70810573 C A CSN1S1 Missense_Mutation p.F136L 0.27 tolerated(0.33) benign(0) TCGA-OR-A5LO-01 5 110819981 110819981 C A CAMK4 Silent p.A413A 0.30 TCGA-OR-A5LO-01 5 115336915 115336915 A G AQPEP Missense_Mutation p.N600S 0.25 deleterious(0.03) benign(0.196) TCGA-OR-A5LO-01 5 149360347 149360348 TG - SLC26A2 Frame_Shift_Del p.V398Ifs*4 0.09 TCGA-OR-A5LO-01 5 156899852 156899852 G A NIPAL4 Missense_Mutation p.A429T 0.48 tolerated(0.68) benign(0.001) TCGA-OR-A5LO-01 5 178608155 178608155 A G ADAMTS2 Missense_Mutation p.V298A 0.28 deleterious(0.01) possibly_damaging(0.822) TCGA-OR-A5LO-01 5 66462103 66462103 G A MAST4 Missense_Mutation p.D2366N 0.23 possibly_damaging(0.747) TCGA-OR-A5LO-01 5 68485476 68485476 C G CENPH Silent p.P5P 0.20 TCGA-OR-A5LO-01 5 82833991 82833991 G T VCAN Missense_Mutation p.K1723N 0.06 tolerated(0.07) benign(0.287) TCGA-OR-A5LO-01 6 14131769 14131769 G C CD83 Missense_Mutation p.E58Q 0.39 deleterious(0.04) benign(0.422) TCGA-OR-A5LO-01 6 158074629 158074629 G A ZDHHC14 Missense_Mutation p.M346I 0.89 tolerated(0.35) benign(0.001) TCGA-OR-A5LO-01 6 26156922 26156922 T A HIST1H1E Missense_Mutation p.S102T 0.51 deleterious(0.02) possibly_damaging(0.809) TCGA-OR-A5LO-01 7 102182084 102182084 C A RP11-514P8.7 Silent p.V259V 0.17 TCGA-OR-A5LO-01 7 141490447 141490447 G T TAS2R5 Missense_Mutation p.A96S 0.26 deleterious(0.02) probably_damaging(0.974) TCGA-OR-A5LO-01 7 150696313 150696313 A G NOS3 Missense_Mutation p.Y331C 0.55 deleterious(0) probably_damaging(0.992) TCGA-OR-A5LO-01 7 6175530 6175530 C G USP42 Silent p.L167L 0.18 TCGA-OR-A5LO-01 7 99697290 99697290 A T MCM7 Silent p.I66I 0.18 TCGA-OR-A5LO-01 8 24811264 24811264 C T CTD-2168K21.2 5'Flank 0.84 TCGA-OR-A5LO-01 8 69020559 69020559 G A PREX2 Silent p.S977S 0.34 TCGA-OR-A5LO-01 9 115421992 115421992 G A KIAA1958 Silent p.T598T 0.45 TCGA-OR-A5LO-01 9 36217454 36217454 C G GNE Missense_Mutation p.D724H 0.36 deleterious_low_confidence(0.04) benign(0.168) TCGA-OR-A5LO-01 X 132090979 132090979 G T HS6ST2 Missense_Mutation p.H268Q 0.21 tolerated(0.06) benign(0.431) TCGA-OR-A5LO-01 X 14549224 14549224 A G GLRA2 Intron 0.36 TCGA-OR-A5LO-01 X 153133282 153133282 C A L1CAM Missense_Mutation p.A638S 0.19 deleterious(0.05) probably_damaging(0.963) TCGA-OR-A5LO-01 X 30577888 30577888 C T CXorf21 Silent p.E195E 0.24 TCGA-OR-A5LO-01 X 30577890 30577890 C T CXorf21 Missense_Mutation p.E195K 0.23 deleterious(0.04) possibly_damaging(0.648) TCGA-OR-A5LO-01 X 38144731 38144731 C A RPGR 3'UTR 0.19 TCGA-OR-A5LO-01 X 70587376 70587376 G T TAF1 Missense_Mutation p.G70W 0.47 deleterious(0) probably_damaging(1) TCGA-OR-A5LP-01 10 129913821 129913821 G T MKI67 Missense_Mutation p.T284N 0.59 tolerated(0.11) probably_damaging(0.915) TCGA-OR-A5LP-01 11 22279254 22279254 C T ANO5 Missense_Mutation p.T454M 0.46 deleterious(0.02) possibly_damaging(0.56) TCGA-OR-A5LP-01 12 59268001 59268001 C T LRIG3 Missense_Mutation p.S984N 0.34 tolerated_low_confidence(0.34) benign(0) TCGA-OR-A5LP-01 12 6439136 6439136 G C TNFRSF1A Missense_Mutation p.P289A 0.37 tolerated(0.06) benign(0.012) TCGA-OR-A5LP-01 13 108861756 108861756 C A LIG4 Missense_Mutation p.D621Y 0.06 deleterious(0.01) benign(0.197) TCGA-OR-A5LP-01 18 63530297 63530297 G A CDH7 Intron 0.21 TCGA-OR-A5LP-01 19 44223431 44223431 C T IRGC Missense_Mutation p.R241C 0.05 deleterious(0.02) benign(0.141) TCGA-OR-A5LP-01 19 49645325 49645325 C G PPFIA3 Missense_Mutation p.L833V 0.08 tolerated(0.08) benign(0.002) TCGA-OR-A5LP-01 1 179956383 179956383 A G CEP350 Missense_Mutation p.T28A 0.12 benign(0.005) TCGA-OR-A5LP-01 1 183867009 183867009 G T RGL1 Missense_Mutation p.R438L 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-OR-A5LP-01 1 70904780 70904784 ATAGC - CTH Splice_Site p.X398_splice 0.42 TCGA-OR-A5LP-01 20 35944722 35944722 G A MANBAL Silent p.P54P 0.32 TCGA-OR-A5LP-01 2 109382319 109382319 T A RANBP2 Missense_Mutation p.F1775Y 0.03 deleterious(0) benign(0) TCGA-OR-A5LP-01 2 241835134 241835134 A G C2orf54 Missense_Mutation p.I94T 0.64 deleterious(0.04) benign(0.008) TCGA-OR-A5LP-01 4 144106512 144106512 G C USP38 5'UTR 0.56 TCGA-OR-A5LP-01 7 22348060 22348060 T C RAPGEF5 Missense_Mutation p.Y40C 0.06 tolerated(0.17) benign(0) TCGA-OR-A5LP-01 7 51111334 51111334 C A COBL Silent p.V384V 0.41 TCGA-OR-A5LP-01 7 53103693 53103693 G T POM121L12 Missense_Mutation p.R110L 0.08 tolerated(0.22) benign(0.009) TCGA-OR-A5LP-01 9 112899504 112899504 A T PALM2-AKAP2 Missense_Mutation p.Q560H 0.19 deleterious(0) probably_damaging(0.999) TCGA-OR-A5LP-01 9 137676893 137676893 G A COL5A1 Missense_Mutation p.R848H 0.13 unknown(0) TCGA-OR-A5LP-01 9 90346015 90346015 C G CTSL Missense_Mutation p.T332S 0.55 tolerated(0.14) benign(0.006) TCGA-OR-A5LP-01 X 16871808 16871808 A G RBBP7 Missense_Mutation p.M296T 0.33 deleterious(0.02) possibly_damaging(0.799) TCGA-OR-A5LP-01 X 40498514 40498514 A T CXorf38 Intron 0.38 TCGA-OR-A5LR-01 11 4661767 4661767 G T OR51D1 Missense_Mutation p.K249N 0.86 deleterious(0) probably_damaging(0.998) TCGA-OR-A5LR-01 11 562525 562525 G A RASSF7 Missense_Mutation p.A191T 0.10 tolerated(0.45) possibly_damaging(0.521) TCGA-OR-A5LR-01 12 9751229 9751229 A T KLRB1 Missense_Mutation p.C94S 0.06 deleterious(0) probably_damaging(0.997) TCGA-OR-A5LR-01 18 11752854 11752854 G A GNAL Missense_Mutation p.A127T 0.78 tolerated(0.2) probably_damaging(0.999) TCGA-OR-A5LR-01 19 9063253 9063253 T C MUC16 Missense_Mutation p.S8065G 0.68 unknown(0) TCGA-OR-A5LR-01 21 36259202 36259202 A G RUNX1 Missense_Mutation p.F97L 0.22 tolerated(0.13) probably_damaging(0.998) TCGA-OR-A5LR-01 3 148763873 148763873 A G HLTF Missense_Mutation p.I689T 0.70 deleterious(0) probably_damaging(0.969) TCGA-OR-A5LR-01 3 50005492 50005492 C T RBM6 Missense_Mutation p.R212C 0.22 tolerated(0.17) possibly_damaging(0.776) TCGA-OR-A5LR-01 6 26197478 26197478 T C HIST1H3D Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0.02) benign(0.267) TCGA-OR-A5LR-01 6 80406276 80406276 A G SH3BGRL2 Silent p.A102A 0.26 TCGA-OR-A5LR-01 8 145535011 145535011 T A HSF1 Missense_Mutation p.I190N 0.33 deleterious(0) possibly_damaging(0.886) TCGA-OR-A5LR-01 9 74359971 74359971 G A TMEM2 Missense_Mutation p.R333W 0.13 tolerated(0.07) possibly_damaging(0.586) TCGA-OR-A5LR-01 X 102842255 102842255 C A TCEAL4 3'UTR 0.41 TCGA-OR-A5LR-01 X 18622933 18622933 G A CDKL5 Missense_Mutation p.S630N 0.42 tolerated_low_confidence(0.24) benign(0.213) TCGA-OR-A5LS-01 10 11911399 11911399 T A PROSER2 Intron 0.11 TCGA-OR-A5LS-01 11 117078735 117078735 G T PCSK7 Nonsense_Mutation p.C579* 0.36 TCGA-OR-A5LS-01 11 128857997 128857997 T C ARHGAP32 Missense_Mutation p.T393A 0.23 tolerated(0.28) benign(0.281) TCGA-OR-A5LS-01 11 33163056 33163056 A C CSTF3 Intron 0.75 TCGA-OR-A5LS-01 14 36840759 36840759 C T DPPA3P2 RNA 0.18 TCGA-OR-A5LS-01 16 61851433 61851433 C G CDH8 Silent p.V409V 0.38 TCGA-OR-A5LS-01 19 44469119 44469119 G A ZNF221 Silent p.K33K 0.03 TCGA-OR-A5LS-01 19 52941934 52941934 G A ZNF534 Silent p.G420G 0.24 TCGA-OR-A5LS-01 19 59010241 59010241 G C SLC27A5 Missense_Mutation p.P603A 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-OR-A5LS-01 1 42047867 42047867 C A HIVEP3 Missense_Mutation p.D868Y 0.13 probably_damaging(0.94) TCGA-OR-A5LS-01 20 1293253 1293253 T C SDCBP2 Missense_Mutation p.I180V 0.30 deleterious(0.03) benign(0.254) TCGA-OR-A5LS-01 2 61493260 61493260 T A USP34 Missense_Mutation p.S1826C 0.05 deleterious(0) possibly_damaging(0.695) TCGA-OR-A5LS-01 3 164783069 164783069 G A SI Nonsense_Mutation p.R263* 0.44 TCGA-OR-A5LS-01 3 50325647 50325647 C T IFRD2 Missense_Mutation p.R499Q 0.06 deleterious(0) probably_damaging(0.981) TCGA-OR-A5LS-01 4 119653957 119653957 C G SEC24D Missense_Mutation p.Q869H 0.20 tolerated(0.54) benign(0.069) TCGA-OR-A5LS-01 5 101592982 101592982 G A SLCO4C1 Nonsense_Mutation p.Q436* 0.04 TCGA-OR-A5LS-01 5 133640095 133640095 C A CDKL3 Splice_Site p.X541_splice 0.34 TCGA-OR-A5LS-01 9 93657885 93657885 G A SYK 3'UTR 0.42 TCGA-OR-A5LS-01 X 106846459 106846459 A G FRMPD3 Silent p.Q1763Q 0.36 TCGA-OR-A5LT-01 10 112357947 112357947 A G SMC3 Missense_Mutation p.T723A 0.26 tolerated(0.08) benign(0.055) TCGA-OR-A5LT-01 11 108142086 108142098 CACAAGGGATGCT - ATM Frame_Shift_Del p.T1011Kfs*7 0.88 TCGA-OR-A5LT-01 11 113631587 113631587 C A ZW10 Missense_Mutation p.Q98H 0.92 deleterious(0) possibly_damaging(0.521) TCGA-OR-A5LT-01 11 3846588 3846589 - T PGAP2 Frame_Shift_Ins p.V284Cfs*28 0.48 TCGA-OR-A5LT-01 11 64577330 64577333 AGAC - MEN1 Frame_Shift_Del p.I85Sfs*33 0.93 TCGA-OR-A5LT-01 12 108985995 108985995 C T TMEM119 Silent p.P55P 0.26 TCGA-OR-A5LT-01 12 46328052 46328053 - A SCAF11 Frame_Shift_Ins p.W180Lfs*19 0.27 TCGA-OR-A5LT-01 12 85449577 85449577 C T LRRIQ1 Nonsense_Mutation p.R336* 0.50 TCGA-OR-A5LT-01 14 100141747 100141747 C T HHIPL1 Silent p.V711V 1.00 TCGA-OR-A5LT-01 17 40093013 40093013 A G TTC25 Splice_Site 0.46 TCGA-OR-A5LT-01 17 65822317 65822317 G A BPTF Silent p.E159E 0.49 TCGA-OR-A5LT-01 17 71282046 71282046 G A CDC42EP4 Silent p.Y198Y 0.45 TCGA-OR-A5LT-01 17 73282384 73282384 C T SLC25A19 Splice_Site p.X96_splice 0.17 TCGA-OR-A5LT-01 18 14808568 14808568 G A ANKRD30B Missense_Mutation p.G768D 0.22 tolerated(0.27) possibly_damaging(0.708) TCGA-OR-A5LT-01 19 56296996 56296996 G T NLRP11 Missense_Mutation p.L1033I 0.46 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-OR-A5LT-01 1 247694861 247694861 G A OR2C3 Missense_Mutation p.A318V 0.92 tolerated_low_confidence(0.19) benign(0.092) TCGA-OR-A5LT-01 2 116497402 116497402 C A DPP10 Missense_Mutation p.P266H 0.09 deleterious(0) possibly_damaging(0.672) TCGA-OR-A5LT-01 2 118582643 118582643 T C DDX18 Missense_Mutation p.L445P 0.40 deleterious(0.01) possibly_damaging(0.856) TCGA-OR-A5LT-01 3 196387312 196387312 G T NRROS Silent p.P266P 0.64 TCGA-OR-A5LT-01 3 49050657 49050657 C A WDR6 Missense_Mutation p.P594T 0.64 tolerated(0.15) benign(0.088) TCGA-OR-A5LT-01 3 78680354 78680354 G C ROBO1 Missense_Mutation p.P1195A 0.25 tolerated(1) benign(0.235) TCGA-OR-A5LT-01 4 1373985 1373985 C T UVSSA Silent p.D573D 0.04 TCGA-OR-A5LT-01 7 6844681 6844681 C T CCZ1B Missense_Mutation p.V332I 0.14 tolerated(0.64) benign(0.004) TCGA-OR-A5LT-01 8 125498340 125498340 C G RNF139 Missense_Mutation p.I150M 0.05 tolerated(0.08) benign(0.17) TCGA-OR-A5LT-01 8 143396409 143396409 T G TSNARE1 Missense_Mutation p.K343N 0.91 tolerated(0.08) benign(0.006) TCGA-OR-A5LT-01 9 124936830 124936830 C G MORN5 Nonsense_Mutation p.Y121* 0.19 TCGA-OR-A5LT-01 9 139959388 139959388 G A SAPCD2 Missense_Mutation p.T328M 0.47 tolerated(0.07) benign(0.054) TCGA-OR-A5LT-01 9 22009141 22009141 C T CDKN2B 5'UTR 0.49 TCGA-OR-A5LT-01 X 24844592 24844592 C T POLA1 Silent p.L1198L 0.90 TCGA-OR-A5LT-01 X 96603202 96603202 T C DIAPH2 Missense_Mutation p.Y978H 0.99 deleterious(0.01) probably_damaging(0.998) TCGA-OU-A5PI-01 10 55943228 55943228 C T PCDH15 Missense_Mutation p.M522I 0.40 tolerated(0.24) benign(0.348) TCGA-OU-A5PI-01 11 118986791 118986791 G T C2CD2L Missense_Mutation p.R650L 0.07 deleterious(0) probably_damaging(1) TCGA-OU-A5PI-01 11 70049689 70049689 G C FADD Missense_Mutation p.G42R 0.66 deleterious(0) probably_damaging(0.997) TCGA-OU-A5PI-01 12 69646897 69646898 AA C CPSF6 Frame_Shift_Del p.K113Hfs*28 0.43 TCGA-OU-A5PI-01 13 100925450 100925450 C A PCCA Missense_Mutation p.S305R 0.50 deleterious(0) probably_damaging(1) TCGA-OU-A5PI-01 14 107170191 107170191 T C IGHV1-69 Missense_Mutation p.K31E 0.54 tolerated(0.07) benign(0.061) TCGA-OU-A5PI-01 14 26917292 26917292 C T NOVA1 Missense_Mutation p.G466D 0.41 deleterious(0) probably_damaging(1) TCGA-OU-A5PI-01 14 95085645 95085645 T C SERPINA3 Missense_Mutation p.Y253H 0.08 tolerated(0.08) possibly_damaging(0.902) TCGA-OU-A5PI-01 15 102359139 102359139 C A OR4F15 Missense_Mutation p.F250L 0.07 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-OU-A5PI-01 15 75195092 75195092 C T FAM219B Silent p.Q155Q 0.05 TCGA-OU-A5PI-01 16 30567377 30567377 T C ZNF764 Missense_Mutation p.E122G 0.12 tolerated(0.19) benign(0.008) TCGA-OU-A5PI-01 16 31488760 31488760 G T TGFB1I1 Missense_Mutation p.V417L 0.03 deleterious(0) possibly_damaging(0.896) TCGA-OU-A5PI-01 17 39880915 39880915 G T HAP1 3'UTR 0.12 TCGA-OU-A5PI-01 19 10610253 10610253 G C KEAP1 Missense_Mutation p.L153V 0.22 tolerated(0.15) benign(0.068) TCGA-OU-A5PI-01 19 17311225 17311225 G C MYO9B Missense_Mutation p.K1454N 0.22 tolerated(0.07) benign(0.423) TCGA-OU-A5PI-01 19 21300738 21300738 T C ZNF714 Missense_Mutation p.L423P 0.36 tolerated(1) benign(0) TCGA-OU-A5PI-01 19 3543552 3543552 G C C19orf71 Splice_Site p.X108_splice 0.27 TCGA-OU-A5PI-01 19 40903238 40903238 C T PRX Missense_Mutation p.G341S 0.48 tolerated(0.08) probably_damaging(0.931) TCGA-OU-A5PI-01 19 56243992 56243992 C T NLRP9 Missense_Mutation p.G402E 0.33 deleterious(0) probably_damaging(0.985) TCGA-OU-A5PI-01 1 17274918 17274918 T G CROCC Silent p.R869R 0.49 TCGA-OU-A5PI-01 1 197071136 197071136 C G ASPM Missense_Mutation p.Q2415H 0.60 deleterious(0.02) probably_damaging(1) TCGA-OU-A5PI-01 1 22304887 22304887 T C CELA3B Silent p.S23S 0.61 TCGA-OU-A5PI-01 20 8782728 8782728 C T PLCB1 Intron 0.26 TCGA-OU-A5PI-01 2 106471685 106471685 G A NCK2 Missense_Mutation p.V56M 0.76 deleterious(0) probably_damaging(0.996) TCGA-OU-A5PI-01 2 179427229 179427229 C T TTN Missense_Mutation p.R27877H 0.66 TCGA-OU-A5PI-01 3 132387706 132387706 T C UBA5 Silent p.N114N 0.47 TCGA-OU-A5PI-01 4 143324112 143324112 G A INPP4B Silent p.V117V 0.29 TCGA-OU-A5PI-01 5 121488085 121488085 C A ZNF474 Missense_Mutation p.P134T 0.32 deleterious(0.01) possibly_damaging(0.642) TCGA-OU-A5PI-01 5 126113295 126113297 AGA - LMNB1 In_Frame_Del p.K33del 0.27 TCGA-OU-A5PI-01 5 170640671 170640671 T A RANBP17 Silent p.V756V 0.28 TCGA-OU-A5PI-01 7 146805372 146805372 A G CNTNAP2 Silent p.G228G 0.42 TCGA-OU-A5PI-01 7 149427272 149427272 G C KRBA1 Missense_Mutation p.E615Q 0.34 deleterious(0) probably_damaging(0.969) TCGA-OU-A5PI-01 7 27203337 27203337 C G HOXA9 Missense_Mutation p.R235P 0.38 deleterious(0) probably_damaging(0.997) TCGA-OU-A5PI-01 9 1056586 1056586 A G DMRT2 Silent p.R333R 0.37 TCGA-OU-A5PI-01 9 113168503 113168503 G A SVEP1 Missense_Mutation p.P3126L 0.48 probably_damaging(1) TCGA-OU-A5PI-01 9 96435947 96435954 GCCTGCAG - PHF2 Frame_Shift_Del p.C810Yfs*72 0.36 TCGA-OU-A5PI-01 X 130218194 130218194 A T ARHGAP36 Silent p.A187A 0.42 TCGA-OU-A5PI-01 X 13337648 13337648 G A ATXN3L Missense_Mutation p.L136F 0.27 deleterious(0.03) benign(0.402) TCGA-OU-A5PI-01 X 15821812 15821812 C G ZRSR2 Missense_Mutation p.Q69E 0.35 tolerated(0.17) unknown(0) TCGA-P6-A5OF-01 10 30740635 30740635 G A MAP3K8 Missense_Mutation p.E279K 0.09 tolerated(0.16) benign(0.18) TCGA-P6-A5OF-01 10 49951215 49951229 GGGACCCTGTCAATG - WDFY4 In_Frame_Del p.W694_G699delinsC 0.25 TCGA-P6-A5OF-01 11 125770031 125770031 G A HYLS1 Silent p.Q256Q 0.04 TCGA-P6-A5OF-01 11 64574681 64574681 C T MEN1 Nonsense_Mutation p.W270* 0.57 TCGA-P6-A5OF-01 12 123465730 123465730 G T ARL6IP4 Missense_Mutation p.R138L 0.08 deleterious_low_confidence(0) possibly_damaging(0.569) TCGA-P6-A5OF-01 12 52757872 52757872 G A KRT85 Silent p.L256L 0.16 TCGA-P6-A5OF-01 12 56119366 56119366 T G CD63 Missense_Mutation p.R232S 0.48 deleterious(0) possibly_damaging(0.517) TCGA-P6-A5OF-01 12 64895239 64895239 G A TBK1 3'UTR 0.70 TCGA-P6-A5OF-01 14 90450896 90450896 T C TDP1 Silent p.D307D 0.55 TCGA-P6-A5OF-01 15 42042367 42042367 G - MGA Frame_Shift_Del p.G2188Efs*14 0.42 TCGA-P6-A5OF-01 16 23119496 23119496 C T USP31 Silent p.V214V 0.45 TCGA-P6-A5OF-01 16 50063678 50063678 G T CNEP1R1 Missense_Mutation p.W64L 0.12 tolerated(0.05) benign(0.034) TCGA-P6-A5OF-01 17 32614690 32614690 C A CCL11 Missense_Mutation p.S92Y 0.19 deleterious(0.03) possibly_damaging(0.548) TCGA-P6-A5OF-01 18 31324560 31324560 C T ASXL3 Missense_Mutation p.A1583V 0.84 benign(0.046) TCGA-P6-A5OF-01 19 22171652 22171652 C T ZNF208 Silent p.L21L 0.11 TCGA-P6-A5OF-01 19 35863029 35863029 G A GPR42 Silent p.V256V 0.14 TCGA-P6-A5OF-01 19 46857169 46857169 A T PPP5C Missense_Mutation p.I96F 0.47 deleterious(0.01) benign(0.374) TCGA-P6-A5OF-01 19 6364521 6364521 G A CLPP Silent p.P142P 0.07 TCGA-P6-A5OF-01 19 7589911 7589911 T A MCOLN1 Silent p.P32P 0.38 TCGA-P6-A5OF-01 1 153949857 153949857 C G JTB 5'UTR 0.74 TCGA-P6-A5OF-01 20 62368925 62368925 C T LIME1 Missense_Mutation p.A8V 0.90 tolerated(0.11) possibly_damaging(0.682) TCGA-P6-A5OF-01 21 31661590 31661590 G T KRTAP25-1 Missense_Mutation p.F73L 0.45 tolerated(1) benign(0.418) TCGA-P6-A5OF-01 21 46932128 46932128 C T COL18A1 Missense_Mutation p.S1459L 0.08 probably_damaging(0.999) TCGA-P6-A5OF-01 22 29444479 29444479 G T ZNRF3 Nonsense_Mutation p.E339* 0.83 TCGA-P6-A5OF-01 22 29444480 29444480 G T ZNRF3 Splice_Site p.X339_splice 0.83 TCGA-P6-A5OF-01 22 40657974 40657974 G A TNRC6B Missense_Mutation p.R85H 0.04 deleterious(0.03) probably_damaging(0.997) TCGA-P6-A5OF-01 22 42084888 42084888 C T NHP2L1 5'Flank 0.79 TCGA-P6-A5OF-01 2 29063388 29063388 T C SPDYA Intron 0.89 TCGA-P6-A5OF-01 3 186460034 186460034 C T KNG1 Missense_Mutation p.R617C 0.09 deleterious(0.05) probably_damaging(0.959) TCGA-P6-A5OF-01 4 151504413 151504413 C T MAB21L2 Missense_Mutation p.L78F 0.04 deleterious(0.01) probably_damaging(0.968) TCGA-P6-A5OF-01 5 140307778 140307778 C T PCDHAC1 Missense_Mutation p.S434L 0.43 tolerated(0.08) benign(0.024) TCGA-P6-A5OF-01 6 147830225 147830225 G A SAMD5 Missense_Mutation p.R54H 0.19 deleterious(0) probably_damaging(0.976) TCGA-P6-A5OF-01 7 19748560 19748582 GGCAGGACGCCAGCCTGCCCTAC TGG TWISTNB Frame_Shift_Del p.V20Pfs*39 0.18 TCGA-P6-A5OF-01 7 37780431 37780431 A T GPR141 Missense_Mutation p.I146F 0.38 tolerated(0.38) benign(0.038) TCGA-P6-A5OF-01 8 13947906 13947906 G A SGCZ 3'UTR 0.10 TCGA-P6-A5OF-01 8 143427201 143427201 C A TSNARE1 Silent p.S47S 0.39 TCGA-P6-A5OF-01 8 61769317 61769317 C G CHD7 Missense_Mutation p.P2493R 0.57 possibly_damaging(0.521) TCGA-P6-A5OF-01 9 19786455 19786455 A G SLC24A2 Missense_Mutation p.L137P 0.16 deleterious(0) probably_damaging(0.993) TCGA-P6-A5OF-01 X 101395946 101395946 C T TCEAL6 Missense_Mutation p.D120N 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-P6-A5OF-01 X 102864350 102864350 G A TCEAL3 Missense_Mutation p.D120N 0.04 deleterious(0.01) probably_damaging(0.993) TCGA-P6-A5OF-01 X 107979158 107979158 G T IRS4 Silent p.P139P 0.34 TCGA-P6-A5OF-01 X 12939359 12939359 G T TLR8 Nonsense_Mutation p.E734* 0.08 TCGA-P6-A5OF-01 X 12939360 12939360 A T TLR8 Missense_Mutation p.E734V 0.08 tolerated(0.17) possibly_damaging(0.648) TCGA-P6-A5OG-01 10 101841357 101841357 A G CPN1 Missense_Mutation p.L9P 0.05 deleterious(0.03) possibly_damaging(0.75) TCGA-P6-A5OG-01 10 113920464 113920464 C T GPAM Missense_Mutation p.D553N 0.19 tolerated(0.44) benign(0.002) TCGA-P6-A5OG-01 10 115349332 115349332 C A HABP2 3'UTR 0.25 TCGA-P6-A5OG-01 10 117884991 117884991 T A GFRA1 Missense_Mutation p.R171W 0.15 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 10 121342040 121342040 C T TIAL1 Silent p.V70V 0.25 TCGA-P6-A5OG-01 10 16526726 16526726 G A PTER Missense_Mutation p.E115K 0.29 tolerated(0.48) benign(0.021) TCGA-P6-A5OG-01 10 16911641 16911641 T A CUBN Missense_Mutation p.T3150S 0.26 tolerated(0.06) benign(0.02) TCGA-P6-A5OG-01 10 17362956 17362956 G T ST8SIA6 Missense_Mutation p.P373H 0.13 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 10 18957485 18957485 C T ARL5B Missense_Mutation p.S45F 0.06 tolerated(0.28) benign(0.064) TCGA-P6-A5OG-01 10 27486294 27486294 C A ACBD5 3'UTR 0.12 TCGA-P6-A5OG-01 10 43882684 43882684 T C HNRNPF Missense_Mutation p.R217G 0.28 tolerated(0.37) benign(0.011) TCGA-P6-A5OG-01 10 45799844 45799844 C A OR13A1 Silent p.L9L 0.08 TCGA-P6-A5OG-01 10 50172056 50172056 C T WDFY4 Missense_Mutation p.T2798I 0.11 deleterious(0) probably_damaging(0.997) TCGA-P6-A5OG-01 10 55569300 55569300 G T PCDH15 Missense_Mutation p.P438T 0.11 tolerated(0.14) unknown(0) TCGA-P6-A5OG-01 10 70652486 70652486 C T STOX1 Silent p.N988N 0.10 TCGA-P6-A5OG-01 10 73823959 73823959 T A SPOCK2 Missense_Mutation p.Q323L 0.32 tolerated(0.38) possibly_damaging(0.728) TCGA-P6-A5OG-01 10 81272508 81272508 G C EIF5AL1 Missense_Mutation p.G35R 0.13 deleterious(0) possibly_damaging(0.761) TCGA-P6-A5OG-01 10 92631740 92631740 C T RPP30 5'UTR 0.08 TCGA-P6-A5OG-01 10 96447544 96447544 C T CYP2C18 Silent p.G62G 0.09 TCGA-P6-A5OG-01 11 124440077 124440077 C A OR8A1 Missense_Mutation p.A38E 0.36 deleterious(0) benign(0.001) TCGA-P6-A5OG-01 11 133790535 133790535 G A IGSF9B Nonsense_Mutation p.Q1029* 0.15 TCGA-P6-A5OG-01 11 15257156 15257156 C G INSC Silent p.T440T 0.36 TCGA-P6-A5OG-01 11 30435806 30435806 G T MPPED2 Silent p.P245P 0.27 TCGA-P6-A5OG-01 11 30435807 30435807 G T MPPED2 Missense_Mutation p.P245H 0.27 deleterious(0) probably_damaging(0.998) TCGA-P6-A5OG-01 11 32118693 32118693 G A RCN1 Silent p.K86K 0.17 TCGA-P6-A5OG-01 11 45671302 45671302 T C CHST1 Missense_Mutation p.E391G 0.30 tolerated(0.29) benign(0.079) TCGA-P6-A5OG-01 11 57004442 57004442 C - APLNR Frame_Shift_Del p.A13Qfs*64 0.27 TCGA-P6-A5OG-01 11 57957980 57957980 C A OR9Q2 Nonsense_Mutation p.Y6* 0.37 TCGA-P6-A5OG-01 11 58295011 58295011 C T LPXN Silent p.L364L 0.17 TCGA-P6-A5OG-01 11 60620261 60620261 A T PTGDR2 Missense_Mutation p.L312Q 0.40 tolerated(0.18) possibly_damaging(0.472) TCGA-P6-A5OG-01 11 61277683 61277683 G A LRRC10B 3'UTR 0.22 TCGA-P6-A5OG-01 11 69625149 69625149 T A FGF3 Missense_Mutation p.Q215L 0.40 deleterious_low_confidence(0.03) benign(0.033) TCGA-P6-A5OG-01 11 88027678 88027678 T C CTSC Splice_Site p.X297_splice 0.44 TCGA-P6-A5OG-01 11 89892474 89892474 G T NAALAD2 Nonsense_Mutation p.G320* 0.06 TCGA-P6-A5OG-01 11 92498090 92498090 C A FAT3 Missense_Mutation p.R1344S 0.35 probably_damaging(0.991) TCGA-P6-A5OG-01 11 92534190 92534190 A G FAT3 Missense_Mutation p.N2671D 0.46 possibly_damaging(0.88) TCGA-P6-A5OG-01 11 92592485 92592485 G A FAT3 Silent p.L3885L 0.18 TCGA-P6-A5OG-01 11 95657077 95657077 C T MTMR2 Silent p.P14P 0.19 TCGA-P6-A5OG-01 12 109278894 109278894 C T DAO Missense_Mutation p.R38C 0.14 tolerated(0.07) benign(0.102) TCGA-P6-A5OG-01 12 114404096 114404096 G C RBM19 5'UTR 0.10 TCGA-P6-A5OG-01 12 11546209 11546209 G T PRB2 Missense_Mutation p.P268Q 0.35 deleterious(0) unknown(0) TCGA-P6-A5OG-01 12 32447047 32447047 G T BICD1 Missense_Mutation p.L182F 0.18 deleterious(0) probably_damaging(0.948) TCGA-P6-A5OG-01 12 48090102 48090102 C T RPAP3 Missense_Mutation p.V168M 0.22 deleterious(0) probably_damaging(0.993) TCGA-P6-A5OG-01 12 52308267 52308267 G C ACVRL1 Missense_Mutation p.E224Q 0.18 deleterious(0) possibly_damaging(0.842) TCGA-P6-A5OG-01 12 52449941 52449941 A G NR4A1 Missense_Mutation p.E348G 0.25 deleterious(0) benign(0.051) TCGA-P6-A5OG-01 12 55615093 55615093 G T OR10A7 Silent p.V95V 0.29 TCGA-P6-A5OG-01 12 57538799 57538799 A C LRP1 Missense_Mutation p.T165P 0.26 possibly_damaging(0.702) TCGA-P6-A5OG-01 12 64878206 64878206 A C TBK1 Missense_Mutation p.K372N 0.09 tolerated(0.31) benign(0.138) TCGA-P6-A5OG-01 12 68810 68810 C A RP11-598F7.1 RNA 0.22 TCGA-P6-A5OG-01 12 8075621 8075621 C A SLC2A3 Splice_Site p.X357_splice 0.18 TCGA-P6-A5OG-01 12 8998816 8998816 C T A2ML1 Nonsense_Mutation p.Q561* 0.18 TCGA-P6-A5OG-01 13 20625654 20625654 G A ZMYM2 Missense_Mutation p.D792N 0.10 tolerated(0.76) benign(0.413) TCGA-P6-A5OG-01 13 23905553 23905553 T C SACS Silent p.P4154P 0.21 TCGA-P6-A5OG-01 13 28623524 28623524 C A FLT3 Missense_Mutation p.V345L 0.27 tolerated(1) benign(0) TCGA-P6-A5OG-01 13 39265709 39265709 T A FREM2 Missense_Mutation p.F1410I 0.11 tolerated(0.05) probably_damaging(0.925) TCGA-P6-A5OG-01 13 46559801 46559801 C T ZC3H13 Missense_Mutation p.E451K 0.14 unknown(0) TCGA-P6-A5OG-01 13 46841045 46841045 C T LRRC63 Silent p.V496V 0.20 TCGA-P6-A5OG-01 13 50205857 50205857 C A ARL11 3'UTR 0.36 TCGA-P6-A5OG-01 14 103599182 103599182 C T TNFAIP2 Silent p.F506F 0.08 TCGA-P6-A5OG-01 14 105478272 105478272 C A CDCA4 Intron 0.23 TCGA-P6-A5OG-01 14 106174282 106174282 G T IGHA1 Missense_Mutation p.S169R 0.23 tolerated(0.45) benign(0.005) TCGA-P6-A5OG-01 14 21552141 21552141 C T ARHGEF40 Nonsense_Mutation p.Q1241* 0.26 TCGA-P6-A5OG-01 14 23821201 23821201 C A SLC22A17 Missense_Mutation p.D75Y 0.17 deleterious(0.01) benign(0.174) TCGA-P6-A5OG-01 14 42360856 42360856 G C LRFN5 Missense_Mutation p.E597Q 0.27 tolerated(0.09) benign(0.031) TCGA-P6-A5OG-01 14 47343286 47343286 T C MDGA2 Missense_Mutation p.N852S 0.29 deleterious(0) probably_damaging(0.994) TCGA-P6-A5OG-01 14 59113460 59113460 G T DACT1 Missense_Mutation p.A707S 0.25 tolerated(0.45) benign(0.016) TCGA-P6-A5OG-01 14 69676281 69676281 C T EXD2 Nonsense_Mutation p.R32* 0.17 TCGA-P6-A5OG-01 15 100649210 100649210 A T ADAMTS17 Missense_Mutation p.V667E 0.29 deleterious(0) benign(0.342) TCGA-P6-A5OG-01 15 101042050 101042050 A T CERS3 Missense_Mutation p.F2Y 0.18 tolerated(0.11) benign(0.4) TCGA-P6-A5OG-01 15 101523853 101523853 G T LRRK1 Missense_Mutation p.A128S 0.16 tolerated(0.17) benign(0.395) TCGA-P6-A5OG-01 15 21071427 21071427 C A POTEB2 Missense_Mutation p.G62C 0.16 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-P6-A5OG-01 15 21071428 21071428 C A POTEB2 Missense_Mutation p.M61I 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.584) TCGA-P6-A5OG-01 15 29674025 29674025 G A FAM189A1 Missense_Mutation p.S77L 0.11 deleterious(0) benign(0.006) TCGA-P6-A5OG-01 15 60747337 60747337 C T NARG2 Missense_Mutation p.E270K 0.10 deleterious(0.01) benign(0.237) TCGA-P6-A5OG-01 15 63449646 63449646 C T RPS27L 5'UTR 0.25 TCGA-P6-A5OG-01 15 64499779 64499779 C T CSNK1G1 Missense_Mutation p.D232N 0.27 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 15 78395927 78395927 G T SH2D7 3'UTR 0.39 TCGA-P6-A5OG-01 15 87089286 87089286 C A AGBL1 Silent p.G867G 0.19 TCGA-P6-A5OG-01 16 46723099 46723099 G T VPS35 5'UTR 0.46 TCGA-P6-A5OG-01 16 55725871 55725871 C T SLC6A2 Silent p.F275F 0.18 TCGA-P6-A5OG-01 16 70916650 70916650 G T HYDIN Silent p.G3376G 0.16 TCGA-P6-A5OG-01 16 75563186 75563186 C T CHST5 Missense_Mutation p.R366H 0.11 deleterious(0.03) benign(0.024) TCGA-P6-A5OG-01 16 84473062 84473062 A T ATP2C2 Missense_Mutation p.T381S 0.19 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 16 89598886 89598886 G T SPG7 Missense_Mutation p.R389L 0.48 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 17 21826168 21826168 G T FAM27L RNA 0.16 TCGA-P6-A5OG-01 17 27869957 27869957 G T TAOK1 Missense_Mutation p.G975W 0.28 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-P6-A5OG-01 17 3101622 3101622 A T OR1A2 Silent p.A270A 0.22 TCGA-P6-A5OG-01 17 42155738 42155738 G A HDAC5 3'UTR 0.16 TCGA-P6-A5OG-01 17 43013674 43013674 C T KIF18B Silent p.R13R 0.38 TCGA-P6-A5OG-01 17 68175783 68175783 C A KCNJ2 3'UTR 0.30 TCGA-P6-A5OG-01 17 76121282 76121282 G A TMC6 Missense_Mutation p.L165F 0.30 deleterious(0) probably_damaging(0.918) TCGA-P6-A5OG-01 17 79479051 79479051 C G ACTG1 Missense_Mutation p.D81H 0.19 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-P6-A5OG-01 17 8702057 8702057 C A MFSD6L Missense_Mutation p.V128L 0.27 tolerated(0.32) benign(0.022) TCGA-P6-A5OG-01 18 14748541 14748541 G A ANKRD30B Silent p.K41K 0.15 TCGA-P6-A5OG-01 18 28935166 28935166 C G DSG1 Missense_Mutation p.L1003V 0.27 tolerated(0.93) benign(0.005) TCGA-P6-A5OG-01 18 28972184 28972184 G A DSG4 Missense_Mutation p.D296N 0.24 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 18 70532819 70532819 G T NETO1 Intron 0.22 TCGA-P6-A5OG-01 19 1112929 1112929 C A SBNO2 Missense_Mutation p.R756L 0.24 deleterious(0) possibly_damaging(0.827) TCGA-P6-A5OG-01 19 11664573 11664573 C T ELOF1 Silent p.A80A 0.05 TCGA-P6-A5OG-01 19 34263233 34263233 C A CHST8 Missense_Mutation p.H180Q 0.17 tolerated(0.22) benign(0.148) TCGA-P6-A5OG-01 19 3590128 3590128 C T GIPC3 Silent p.P293P 0.20 TCGA-P6-A5OG-01 19 36581423 36581423 G A WDR62 Splice_Site p.X678_splice 0.13 TCGA-P6-A5OG-01 19 36606495 36606495 G A TBCB Silent p.V11V 0.15 TCGA-P6-A5OG-01 19 37879891 37879891 G A ZNF527 Missense_Mutation p.D314N 0.08 tolerated(0.33) benign(0.001) TCGA-P6-A5OG-01 19 38028241 38028241 C T ZNF793 Silent p.H227H 0.25 TCGA-P6-A5OG-01 19 3834849 3834849 G T ZFR2 Silent p.P62P 0.15 TCGA-P6-A5OG-01 19 39882259 39882259 A C MED29 Missense_Mutation p.Q87P 0.18 tolerated(0.52) benign(0.009) TCGA-P6-A5OG-01 19 40433642 40433642 G A FCGBP Silent p.L209L 0.06 TCGA-P6-A5OG-01 19 43699273 43699273 G T PSG4 Silent p.R288R 0.20 TCGA-P6-A5OG-01 19 43922468 43922468 G T TEX101 Silent p.G241G 0.25 TCGA-P6-A5OG-01 19 53384618 53384618 A G ZNF320 Missense_Mutation p.F254S 0.10 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 19 901464 901464 T A R3HDM4 Silent p.P103P 0.21 TCGA-P6-A5OG-01 1 101706300 101706300 A G S1PR1 3'UTR 0.22 TCGA-P6-A5OG-01 1 110466286 110466286 C - CSF1 Frame_Shift_Del p.S348Ffs*15 0.10 TCGA-P6-A5OG-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.20 deleterious(0.01) benign(0.045) TCGA-P6-A5OG-01 1 12520276 12520276 A T VPS13D Missense_Mutation p.S4163C 0.15 probably_damaging(0.963) TCGA-P6-A5OG-01 1 143767524 143767524 C A PPIAL4G Missense_Mutation p.G109C 0.14 deleterious_low_confidence(0.03) benign(0.355) TCGA-P6-A5OG-01 1 151341951 151341951 C A SELENBP1 Silent p.V47V 0.28 TCGA-P6-A5OG-01 1 152128638 152128638 G C RPTN Missense_Mutation p.Q313E 0.21 deleterious(0.02) benign(0.348) TCGA-P6-A5OG-01 1 154306997 154306997 T C ATP8B2 Missense_Mutation p.M289T 0.19 deleterious(0) probably_damaging(0.961) TCGA-P6-A5OG-01 1 154317580 154317580 C G ATP8B2 Missense_Mutation p.A840G 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-P6-A5OG-01 1 154321000 154321000 G T ATP8B2 Missense_Mutation p.D1127Y 0.23 deleterious(0) possibly_damaging(0.667) TCGA-P6-A5OG-01 1 156645093 156645093 G T NES Missense_Mutation p.Q275K 0.25 deleterious(0.03) possibly_damaging(0.755) TCGA-P6-A5OG-01 1 158263043 158263043 G T CD1C Missense_Mutation p.V311L 0.17 tolerated(0.13) benign(0.013) TCGA-P6-A5OG-01 1 158585167 158585167 C A SPTA1 Missense_Mutation p.M2209I 0.20 tolerated(0.06) possibly_damaging(0.683) TCGA-P6-A5OG-01 1 158614085 158614085 C A SPTA1 Missense_Mutation p.L1432F 0.08 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 1 161143566 161143566 C - B4GALT3 Intron 0.21 TCGA-P6-A5OG-01 1 1656718 1656718 C T CDK11A 5'Flank 0.05 TCGA-P6-A5OG-01 1 16945401 16945401 G A RP5-1182A14.5 3'Flank 0.05 TCGA-P6-A5OG-01 1 170965695 170965695 A T MROH9 Missense_Mutation p.Q462L 0.12 deleterious(0) possibly_damaging(0.864) TCGA-P6-A5OG-01 1 171033431 171033431 A T MROH9 Missense_Mutation p.I846L 0.07 tolerated_low_confidence(0.3) benign(0.008) TCGA-P6-A5OG-01 1 173769549 173769549 G A CENPL 3'UTR 0.10 TCGA-P6-A5OG-01 1 173947732 173947732 C T RC3H1 Silent p.Q332Q 0.09 TCGA-P6-A5OG-01 1 17418973 17418973 G - PADI2 Frame_Shift_Del p.A196Pfs*5 0.12 TCGA-P6-A5OG-01 1 177199054 177199054 G T BRINP2 Silent p.P14P 0.13 TCGA-P6-A5OG-01 1 178753600 178753600 G C RALGPS2 Missense_Mutation p.K35N 0.10 tolerated(0.51) benign(0.008) TCGA-P6-A5OG-01 1 185175896 185175896 G T SWT1 Splice_Site p.X658_splice 0.19 TCGA-P6-A5OG-01 1 18703304 18703305 - C IGSF21 Frame_Shift_Ins p.E373Gfs*19 0.16 TCGA-P6-A5OG-01 1 18703418 18703418 C T IGSF21 Missense_Mutation p.S409F 0.07 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 1 19536671 19536671 G A UBR4 Silent p.D24D 0.24 TCGA-P6-A5OG-01 1 201027621 201027621 T A CACNA1S Splice_Site p.X1176_splice 0.12 TCGA-P6-A5OG-01 1 202878279 202878279 G A KLHL12 Intron 0.08 TCGA-P6-A5OG-01 1 203014631 203014631 C T PPFIA4 Missense_Mutation p.R268W 0.13 deleterious(0) probably_damaging(0.99) TCGA-P6-A5OG-01 1 204086850 204086850 G A SOX13 Intron 0.06 TCGA-P6-A5OG-01 1 20881072 20881072 C T FAM43B 3'UTR 0.26 TCGA-P6-A5OG-01 1 216061975 216061975 C A USH2A Silent p.L2672L 0.19 TCGA-P6-A5OG-01 1 220213537 220213537 G A EPRS Missense_Mutation p.H41Y 0.13 tolerated(0.77) benign(0.003) TCGA-P6-A5OG-01 1 22170649 22170649 G A HSPG2 Missense_Mutation p.R2870W 0.12 possibly_damaging(0.846) TCGA-P6-A5OG-01 1 231344730 231344730 G T TRIM67 Silent p.R619R 0.27 TCGA-P6-A5OG-01 1 231344731 231344731 G T TRIM67 Missense_Mutation p.D620Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-P6-A5OG-01 1 233362971 233362971 C A PCNXL2 Splice_Site p.X835_splice 0.15 TCGA-P6-A5OG-01 1 237893641 237893641 G A RYR2 Silent p.L3640L 0.08 TCGA-P6-A5OG-01 1 24435087 24435087 G T MYOM3 Silent p.R14R 0.18 TCGA-P6-A5OG-01 1 247769150 247769150 C A OR2G3 Missense_Mutation p.P88Q 0.18 deleterious(0.02) benign(0.064) TCGA-P6-A5OG-01 1 24787011 24787011 G T NIPAL3 Silent p.L301L 0.22 TCGA-P6-A5OG-01 1 248512629 248512629 C T OR14C36 Missense_Mutation p.L185F 0.25 deleterious(0) probably_damaging(0.996) TCGA-P6-A5OG-01 1 248616849 248616849 G T OR2T2 Missense_Mutation p.V251F 0.13 deleterious(0.02) benign(0.058) TCGA-P6-A5OG-01 1 27057916 27057916 C T ARID1A Nonsense_Mutation p.Q542* 0.16 TCGA-P6-A5OG-01 1 38260241 38260241 G T MANEAL Missense_Mutation p.M129I 0.16 tolerated(0.58) benign(0.194) TCGA-P6-A5OG-01 1 39913145 39913145 G T MACF1 Missense_Mutation p.Q4490H 0.19 probably_damaging(0.999) TCGA-P6-A5OG-01 1 55569622 55569622 T C USP24 Missense_Mutation p.N1651S 0.19 tolerated(0.05) possibly_damaging(0.621) TCGA-P6-A5OG-01 1 61872377 61872377 T A NFIA Silent p.G511G 0.15 TCGA-P6-A5OG-01 1 64515549 64515549 G T ROR1 Missense_Mutation p.R117L 0.23 deleterious(0) probably_damaging(0.964) TCGA-P6-A5OG-01 1 6636573 6636573 C A TAS1R1 Silent p.A453A 0.21 TCGA-P6-A5OG-01 1 91726883 91726883 C T HFM1 Missense_Mutation p.M1424I 0.10 tolerated_low_confidence(0.52) benign(0.001) TCGA-P6-A5OG-01 1 94640288 94640288 G A ARHGAP29 Silent p.L975L 0.25 TCGA-P6-A5OG-01 20 23728453 23728453 C G CST1 Nonstop_Mutation p.*142Yext*80 0.20 TCGA-P6-A5OG-01 20 2378567 2378567 G A TGM6 Missense_Mutation p.E183K 0.16 deleterious(0) possibly_damaging(0.698) TCGA-P6-A5OG-01 20 44314620 44314620 C T WFDC10B Intron 0.15 TCGA-P6-A5OG-01 20 61150673 61150673 C A C20orf166 Intron 0.38 TCGA-P6-A5OG-01 21 10862756 10862756 C A IGHV1OR21-1 Missense_Mutation p.Q18K 0.13 deleterious(0.01) benign(0.009) TCGA-P6-A5OG-01 21 32624160 32624160 C G TIAM1 Missense_Mutation p.A437P 0.28 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 21 37787631 37787631 C T CHAF1B Missense_Mutation p.P511L 0.10 tolerated_low_confidence(0.11) benign(0.001) TCGA-P6-A5OG-01 22 19870882 19870882 A G TXNRD2 Missense_Mutation p.V351A 0.24 tolerated(0.06) benign(0.108) TCGA-P6-A5OG-01 22 28394403 28394403 G A TTC28 Intron 0.40 TCGA-P6-A5OG-01 22 32550280 32550280 C T C22orf42 Nonsense_Mutation p.W86* 0.20 TCGA-P6-A5OG-01 22 38120692 38120692 C T TRIOBP Missense_Mutation p.S710F 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.485) TCGA-P6-A5OG-01 22 40759061 40759061 G T ADSL Missense_Mutation p.V363F 0.19 deleterious(0) possibly_damaging(0.893) TCGA-P6-A5OG-01 2 105654560 105654560 C G MRPS9 Missense_Mutation p.P4A 0.32 tolerated_low_confidence(0.07) benign(0.156) TCGA-P6-A5OG-01 2 128757634 128757634 T A SAP130 Silent p.T394T 0.29 TCGA-P6-A5OG-01 2 175427147 175427147 A C WIPF1 3'UTR 0.27 TCGA-P6-A5OG-01 2 178982881 178982881 G C RBM45 Missense_Mutation p.A175P 0.25 deleterious(0.01) benign(0.351) TCGA-P6-A5OG-01 2 179454036 179454036 C T TTN Missense_Mutation p.D20806N 0.17 TCGA-P6-A5OG-01 2 198948503 198948503 G T PLCL1 Missense_Mutation p.G88C 0.22 tolerated(0.06) possibly_damaging(0.682) TCGA-P6-A5OG-01 2 210650850 210650850 C G UNC80 Missense_Mutation p.H221D 0.25 possibly_damaging(0.722) TCGA-P6-A5OG-01 2 21230805 21230805 C A APOB Missense_Mutation p.G2979C 0.12 possibly_damaging(0.87) TCGA-P6-A5OG-01 2 21230838 21230838 G T APOB Missense_Mutation p.L2968I 0.31 benign(0.184) TCGA-P6-A5OG-01 2 220288498 220288498 G A DES Splice_Site p.X415_splice 0.13 TCGA-P6-A5OG-01 2 220309866 220309866 G T SPEG Silent p.R266R 0.32 TCGA-P6-A5OG-01 2 27360284 27360284 C T C2orf53 Missense_Mutation p.G305D 0.32 tolerated(0.07) probably_damaging(1) TCGA-P6-A5OG-01 2 48035363 48035363 C T FBXO11 Missense_Mutation p.G893E 0.20 deleterious(0) probably_damaging(0.997) TCGA-P6-A5OG-01 2 74307673 74307673 G T TET3 Silent p.T743T 0.36 TCGA-P6-A5OG-01 2 74588584 74588584 A C DCTN1 3'UTR 0.25 TCGA-P6-A5OG-01 2 79385822 79385822 G T REG3A Missense_Mutation p.H50Q 0.27 deleterious(0.02) possibly_damaging(0.487) TCGA-P6-A5OG-01 2 86732983 86732983 C T CHMP3 Missense_Mutation p.E234K 0.21 deleterious(0.04) benign(0.219) TCGA-P6-A5OG-01 2 89197211 89197211 G T IGKV5-2 Missense_Mutation p.G86W 0.31 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 2 95542518 95542518 G A TEKT4 3'UTR 0.30 TCGA-P6-A5OG-01 2 9731527 9731527 G C YWHAQ Missense_Mutation p.R138G 0.22 deleterious_low_confidence(0) benign(0.36) TCGA-P6-A5OG-01 3 107096669 107096669 G A CCDC54 Missense_Mutation p.E79K 0.07 tolerated(0.11) possibly_damaging(0.651) TCGA-P6-A5OG-01 3 111760858 111760858 C A TMPRSS7 Silent p.S18S 0.12 TCGA-P6-A5OG-01 3 121305055 121305055 C T ARGFX Missense_Mutation p.P186S 0.16 tolerated(0.15) benign(0.109) TCGA-P6-A5OG-01 3 134322623 134322623 A T KY Missense_Mutation p.V595D 0.09 deleterious(0) possibly_damaging(0.898) TCGA-P6-A5OG-01 3 135720486 135720486 A T PPP2R3A Missense_Mutation p.H49L 0.15 deleterious_low_confidence(0.01) benign(0.1) TCGA-P6-A5OG-01 3 136729006 136729006 G T IL20RB Missense_Mutation p.D293Y 0.16 deleterious(0) benign(0.068) TCGA-P6-A5OG-01 3 136729007 136729007 A C IL20RB Missense_Mutation p.D293A 0.15 tolerated(0.07) benign(0) TCGA-P6-A5OG-01 3 138170900 138170900 C T ESYT3 Missense_Mutation p.P113L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-P6-A5OG-01 3 14755626 14755626 A G C3orf20 Missense_Mutation p.T425A 0.18 tolerated(1) benign(0) TCGA-P6-A5OG-01 3 151598373 151598373 G T SUCNR1 Missense_Mutation p.W14C 0.15 tolerated_low_confidence(0.37) benign(0.039) TCGA-P6-A5OG-01 3 154056059 154056059 C T GPR149 Missense_Mutation p.R542H 0.22 deleterious(0) probably_damaging(0.912) TCGA-P6-A5OG-01 3 154890002 154890002 G T MME Splice_Site p.X692_splice 0.12 TCGA-P6-A5OG-01 3 180377267 180377267 C T CCDC39 Silent p.R237R 0.15 TCGA-P6-A5OG-01 3 183957335 183957335 C T VWA5B2 Missense_Mutation p.P786S 0.14 tolerated(0.73) benign(0.001) TCGA-P6-A5OG-01 3 186395283 186395283 C A HRG Missense_Mutation p.H397N 0.19 deleterious(0.05) benign(0.107) TCGA-P6-A5OG-01 3 37034349 37034349 G A EPM2AIP1 Missense_Mutation p.R74C 0.06 deleterious(0) probably_damaging(0.998) TCGA-P6-A5OG-01 3 37367829 37367829 G T GOLGA4 Missense_Mutation p.L1506F 0.16 probably_damaging(0.982) TCGA-P6-A5OG-01 3 48629232 48629232 C - COL7A1 Frame_Shift_Del p.V461Yfs*6 0.18 TCGA-P6-A5OG-01 3 49694135 49694135 G A BSN Silent p.L2382L 0.16 TCGA-P6-A5OG-01 3 52813596 52813596 G T ITIH1 Missense_Mutation p.V187L 0.13 deleterious(0) possibly_damaging(0.829) TCGA-P6-A5OG-01 4 114276890 114276890 C A ANK2 Silent p.S2372S 0.37 TCGA-P6-A5OG-01 4 134073368 134073368 C G PCDH10 Missense_Mutation p.S691R 0.15 tolerated(0.54) benign(0.023) TCGA-P6-A5OG-01 4 163032469 163032469 C G FSTL5 Missense_Mutation p.G27A 0.36 tolerated_low_confidence(0.21) benign(0.002) TCGA-P6-A5OG-01 4 186423472 186423472 C A PDLIM3 Silent p.T357T 0.29 TCGA-P6-A5OG-01 4 189012733 189012733 C A TRIML2 Missense_Mutation p.V320F 0.16 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 4 24821481 24821481 C A CCDC149 Missense_Mutation p.G387W 0.24 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-P6-A5OG-01 4 40245456 40245456 G A RHOH Silent p.E150E 0.29 TCGA-P6-A5OG-01 4 46973176 46973176 C T GABRA4 Silent p.P266P 0.10 TCGA-P6-A5OG-01 4 47428069 47428069 C A GABRB1 3'UTR 0.21 TCGA-P6-A5OG-01 4 71346591 71346591 G A MUC7 Missense_Mutation p.E44K 0.12 tolerated(1) benign(0.006) TCGA-P6-A5OG-01 4 77699996 77699996 G T SHROOM3 Missense_Mutation p.G1886V 0.34 deleterious(0) probably_damaging(0.982) TCGA-P6-A5OG-01 4 86669 86669 G T Z95704.2 RNA 0.37 TCGA-P6-A5OG-01 4 88415405 88415405 G T SPARCL1 Missense_Mutation p.Q183K 0.28 tolerated(0.11) benign(0.146) TCGA-P6-A5OG-01 4 96123902 96123902 C T UNC5C Missense_Mutation p.D706N 0.19 tolerated(0.14) probably_damaging(0.965) TCGA-P6-A5OG-01 5 102613257 102613257 A T C5orf30 3'UTR 0.10 TCGA-P6-A5OG-01 5 102613258 102613258 C T C5orf30 3'UTR 0.10 TCGA-P6-A5OG-01 5 109202628 109202628 G A MAN2A1 Missense_Mutation p.G1122S 0.16 tolerated(0.83) benign(0.01) TCGA-P6-A5OG-01 5 118480306 118480306 G T DMXL1 Missense_Mutation p.G848C 0.09 deleterious(0.02) benign(0.246) TCGA-P6-A5OG-01 5 120021936 120021937 - A PRR16 Frame_Shift_Ins p.N127Kfs*15 0.22 TCGA-P6-A5OG-01 5 128844852 128844852 G C ADAMTS19 Missense_Mutation p.R271P 0.23 tolerated(0.2) probably_damaging(0.922) TCGA-P6-A5OG-01 5 135397233 135397233 C A TGFBI Missense_Mutation p.L651I 0.06 tolerated_low_confidence(0.24) benign(0.123) TCGA-P6-A5OG-01 5 137522995 137522995 C A KIF20A Silent p.R856R 0.13 TCGA-P6-A5OG-01 5 13776728 13776728 G T DNAH5 Missense_Mutation p.P3065T 0.14 possibly_damaging(0.876) TCGA-P6-A5OG-01 5 140248776 140248776 C T PCDHA11 Nonsense_Mutation p.Q30* 0.35 TCGA-P6-A5OG-01 5 140710303 140710303 C T PCDHGA1 Missense_Mutation p.L18F 0.08 tolerated_low_confidence(0.32) benign(0.013) TCGA-P6-A5OG-01 5 145640390 145640390 C T RBM27 Missense_Mutation p.P608S 0.19 deleterious(0) probably_damaging(0.997) TCGA-P6-A5OG-01 5 156727750 156727750 G A CYFIP2 Missense_Mutation p.E113K 0.11 deleterious(0.03) possibly_damaging(0.716) TCGA-P6-A5OG-01 5 158743705 158743705 C A IL12B Silent p.V325V 0.28 TCGA-P6-A5OG-01 5 169108869 169108869 A G DOCK2 Missense_Mutation p.I198V 0.19 tolerated(0.07) possibly_damaging(0.542) TCGA-P6-A5OG-01 5 169309924 169309924 A G FAM196B Missense_Mutation p.S327P 0.04 tolerated(0.07) benign(0.007) TCGA-P6-A5OG-01 5 176056453 176056453 C A SNCB Intron 0.09 TCGA-P6-A5OG-01 5 176721447 176721447 A T NSD1 Missense_Mutation p.R2360W 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-P6-A5OG-01 5 176824891 176824891 G T SLC34A1 Silent p.T508T 0.24 TCGA-P6-A5OG-01 5 178310056 178310056 A G ZNF354B Silent p.L201L 0.21 TCGA-P6-A5OG-01 5 180166785 180166785 T C OR2Y1 Missense_Mutation p.I92V 0.10 deleterious(0.02) benign(0.125) TCGA-P6-A5OG-01 5 192414 192414 C A LRRC14B Missense_Mutation p.P254H 0.11 tolerated(0.33) benign(0.004) TCGA-P6-A5OG-01 5 26988446 26988446 G A CDH9 5'UTR 0.18 TCGA-P6-A5OG-01 5 32774925 32774925 C A NPR3 Missense_Mutation p.Q391K 0.07 tolerated(0.35) benign(0.099) TCGA-P6-A5OG-01 5 39376968 39376968 C T DAB2 Missense_Mutation p.D641N 0.14 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 5 45645525 45645525 G A HCN1 Missense_Mutation p.S204F 0.08 deleterious(0) probably_damaging(0.985) TCGA-P6-A5OG-01 5 5235150 5235150 G T ADAMTS16 Missense_Mutation p.C625F 0.20 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 5 66396385 66396385 G C MAST4 Missense_Mutation p.R345S 0.09 probably_damaging(0.987) TCGA-P6-A5OG-01 5 82876192 82876192 C T VCAN Missense_Mutation p.S3377L 0.11 tolerated(0.12) benign(0.094) TCGA-P6-A5OG-01 5 90672527 90672527 C A ARRDC3 Nonsense_Mutation p.E141* 0.18 TCGA-P6-A5OG-01 5 94031003 94031003 A G ANKRD32 Missense_Mutation p.M1055V 0.17 tolerated(0.19) benign(0) TCGA-P6-A5OG-01 5 94756097 94756097 G T FAM81B Missense_Mutation p.R216I 0.06 deleterious(0) probably_damaging(0.979) TCGA-P6-A5OG-01 6 105614548 105614548 C T POPDC3 Intron 0.18 TCGA-P6-A5OG-01 6 112454057 112454057 G T LAMA4 Missense_Mutation p.F1244L 0.11 deleterious(0.01) benign(0.201) TCGA-P6-A5OG-01 6 117045485 117045485 C T KPNA5 Missense_Mutation p.P316S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-P6-A5OG-01 6 132910201 132910201 A T TAAR5 Missense_Mutation p.F209I 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-P6-A5OG-01 6 159646689 159646689 G T FNDC1 Missense_Mutation p.R336L 0.10 deleterious(0) unknown(0) TCGA-P6-A5OG-01 6 168439395 168439395 G A KIF25 Silent p.A160A 0.10 TCGA-P6-A5OG-01 6 26124473 26124473 G A HIST1H2AC Missense_Mutation p.G5S 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-P6-A5OG-01 6 27277645 27277645 C A POM121L2 Nonsense_Mutation p.G769* 0.28 TCGA-P6-A5OG-01 6 31852525 31852525 C A EHMT2 Missense_Mutation p.A834S 0.32 tolerated(0.1) probably_damaging(0.991) TCGA-P6-A5OG-01 6 3225064 3225064 G A TUBB2B Missense_Mutation p.S420F 0.08 deleterious_low_confidence(0.01) benign(0.063) TCGA-P6-A5OG-01 6 56765401 56765401 G A DST Missense_Mutation p.R79W 0.17 deleterious_low_confidence(0) benign(0.42) TCGA-P6-A5OG-01 6 76558188 76558188 G A MYO6 Missense_Mutation p.V340I 0.10 tolerated(0.43) unknown(0) TCGA-P6-A5OG-01 7 100383624 100383624 C T ZAN Silent p.G2279G 0.08 TCGA-P6-A5OG-01 7 100680798 100680798 T C MUC17 Missense_Mutation p.I2034T 0.25 unknown(0) TCGA-P6-A5OG-01 7 112724534 112724534 G A GPR85 Silent p.V81V 0.04 TCGA-P6-A5OG-01 7 135287599 135287599 C G NUP205 Silent p.L853L 0.10 TCGA-P6-A5OG-01 7 148702357 148702357 C A PDIA4 Silent p.G466G 0.13 TCGA-P6-A5OG-01 7 157903544 157903544 G T PTPRN2 Silent p.P540P 0.12 TCGA-P6-A5OG-01 7 1733227 1733227 G A AC074389.6 Missense_Mutation p.P102L 0.12 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-P6-A5OG-01 7 38725390 38725390 G T FAM183B Missense_Mutation p.H72Q 0.18 deleterious(0.01) probably_damaging(0.912) TCGA-P6-A5OG-01 7 48349628 48349628 G T ABCA13 Nonsense_Mutation p.E3136* 0.06 TCGA-P6-A5OG-01 7 70255109 70255109 G C AUTS2 Silent p.P969P 0.12 TCGA-P6-A5OG-01 7 70255478 70255478 G A AUTS2 Silent p.R1092R 0.07 TCGA-P6-A5OG-01 7 86415946 86415946 G C GRM3 Missense_Mutation p.D280H 0.19 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OG-01 7 87011389 87011389 G T CROT Splice_Site p.X383_splice 0.10 TCGA-P6-A5OG-01 7 87174241 87174241 A T ABCB1 Silent p.S654S 0.06 TCGA-P6-A5OG-01 8 104933928 104933928 G T RIMS2 Missense_Mutation p.M704I 0.29 deleterious_low_confidence(0) benign(0.176) TCGA-P6-A5OG-01 8 11614477 11614477 G T GATA4 Missense_Mutation p.S344I 0.32 tolerated(0.06) benign(0.109) TCGA-P6-A5OG-01 8 145730650 145730650 G T GPT Missense_Mutation p.A173S 0.32 tolerated(1) benign(0.006) TCGA-P6-A5OG-01 8 2092872 2092872 C T MYOM2 Silent p.L1455L 0.15 TCGA-P6-A5OG-01 8 27516477 27516477 G A SCARA3 Missense_Mutation p.G264S 0.08 tolerated(1) benign(0.011) TCGA-P6-A5OG-01 8 38961141 38961141 A G ADAM9 Silent p.Q794Q 0.08 TCGA-P6-A5OG-01 8 39695741 39695741 G T ADAM2 5'UTR 0.37 TCGA-P6-A5OG-01 8 52321954 52321954 C T PXDNL Missense_Mutation p.A744T 0.24 deleterious(0) probably_damaging(0.995) TCGA-P6-A5OG-01 8 55542715 55542715 C T RP1 Silent p.I2091I 0.10 TCGA-P6-A5OG-01 8 618622 618622 G C ERICH1 Missense_Mutation p.P412A 0.29 tolerated(0.07) benign(0.19) TCGA-P6-A5OG-01 8 75929576 75929576 G A CRISPLD1 Missense_Mutation p.A340T 0.16 deleterious(0) possibly_damaging(0.876) TCGA-P6-A5OG-01 8 85441789 85441789 G T RALYL Missense_Mutation p.R91I 0.37 deleterious(0) possibly_damaging(0.882) TCGA-P6-A5OG-01 8 86042180 86042180 C T LRRCC1 Silent p.L551L 0.07 TCGA-P6-A5OG-01 8 87491208 87491208 G A RMDN1 Nonsense_Mutation p.Q225* 0.19 TCGA-P6-A5OG-01 9 104239304 104239304 G T TMEM246 Missense_Mutation p.A24D 0.12 deleterious(0.05) benign(0.367) TCGA-P6-A5OG-01 9 114145493 114145493 G C KIAA0368 Silent p.L1445L 0.21 TCGA-P6-A5OG-01 9 118950234 118950234 G T PAPPA Missense_Mutation p.R406L 0.20 deleterious(0) benign(0.25) TCGA-P6-A5OG-01 9 14842602 14842602 G T FREM1 Missense_Mutation p.H484N 0.20 deleterious(0) possibly_damaging(0.811) TCGA-P6-A5OG-01 9 77749309 77749309 C T OSTF1 Nonsense_Mutation p.Q136* 0.17 TCGA-P6-A5OG-01 9 90500251 90500251 C A SPATA31E1 Missense_Mutation p.N283K 0.17 tolerated(0.09) benign(0.287) TCGA-P6-A5OG-01 9 90500970 90500970 C A SPATA31E1 Missense_Mutation p.T523N 0.15 deleterious(0.02) possibly_damaging(0.804) TCGA-P6-A5OG-01 X 118151510 118151510 G T LONRF3 Missense_Mutation p.G713C 0.16 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 X 118151511 118151511 G T LONRF3 Missense_Mutation p.G713V 0.17 deleterious(0) probably_damaging(1) TCGA-P6-A5OG-01 X 132351890 132351890 A C TFDP3 Missense_Mutation p.V133G 0.22 deleterious(0) probably_damaging(0.975) TCGA-P6-A5OG-01 X 136652203 136652203 C A ZIC3 Missense_Mutation p.P460T 0.21 tolerated(0.29) possibly_damaging(0.612) TCGA-P6-A5OG-01 X 149638554 149638554 A T MAMLD1 Nonsense_Mutation p.K212* 0.23 TCGA-P6-A5OG-01 X 34149725 34149725 C A FAM47A Missense_Mutation p.R224L 0.18 tolerated(0.16) probably_damaging(0.979) TCGA-P6-A5OG-01 X 52826338 52826338 A G SPANXN5 Silent p.C17C 0.16 TCGA-P6-A5OG-01 X 7252107 7252107 G T STS Missense_Mutation p.C446F 0.14 deleterious(0.01) probably_damaging(1) TCGA-P6-A5OG-01 X 8138059 8138059 G T VCX2 3'UTR 0.18 TCGA-P6-A5OH-01 10 102766836 102766836 G A LZTS2 Missense_Mutation p.E641K 0.18 deleterious(0) probably_damaging(0.993) TCGA-P6-A5OH-01 10 55582342 55582342 C A PCDH15 Missense_Mutation p.R1717I 0.25 deleterious_low_confidence(0.02) benign(0.063) TCGA-P6-A5OH-01 10 74684374 74684374 G A OIT3 Missense_Mutation p.V447I 0.18 tolerated(0.69) benign(0.002) TCGA-P6-A5OH-01 10 77542776 77542776 A T C10orf11 Nonsense_Mutation p.K15* 0.15 TCGA-P6-A5OH-01 11 119057343 119057343 G T PDZD3 Nonsense_Mutation p.G92* 0.27 TCGA-P6-A5OH-01 11 22646416 22646416 A G FANCF Missense_Mutation p.L314P 0.09 deleterious(0) probably_damaging(1) TCGA-P6-A5OH-01 11 47256376 47256376 C - DDB2 Frame_Shift_Del p.L258Wfs*6 0.08 TCGA-P6-A5OH-01 11 5510738 5510738 G C OR52D1 Missense_Mutation p.G268R 0.21 deleterious(0) probably_damaging(1) TCGA-P6-A5OH-01 11 56380625 56380625 C T OR5M1 Missense_Mutation p.M118I 0.21 deleterious(0) benign(0.175) TCGA-P6-A5OH-01 11 57995729 57995729 C T OR10Q1 Missense_Mutation p.V207M 0.03 deleterious(0.05) possibly_damaging(0.529) TCGA-P6-A5OH-01 11 61291923 61291923 A G SYT7 Missense_Mutation p.I310T 0.04 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OH-01 11 624261 624263 CTC - CDHR5 In_Frame_Del p.E88del 0.15 TCGA-P6-A5OH-01 11 6470233 6470233 C T TRIM3 3'UTR 0.23 TCGA-P6-A5OH-01 11 65386303 65386303 G C PCNXL3 Silent p.R490R 0.32 TCGA-P6-A5OH-01 11 6579406 6579406 G A DNHD1 Missense_Mutation p.A2961T 0.18 possibly_damaging(0.906) TCGA-P6-A5OH-01 11 66461607 66461608 CA - SPTBN2 Splice_Site p.X1501_splice 0.38 TCGA-P6-A5OH-01 11 76370747 76370747 G T LRRC32 Silent p.I630I 0.16 TCGA-P6-A5OH-01 11 78369696 78369696 C A TENM4 Missense_Mutation p.A2573S 0.08 tolerated(0.27) possibly_damaging(0.562) TCGA-P6-A5OH-01 11 92624186 92624186 A T FAT3 Missense_Mutation p.E4559D 0.26 benign(0.022) TCGA-P6-A5OH-01 12 107712639 107712639 C G BTBD11 5'UTR 0.13 TCGA-P6-A5OH-01 12 118454660 118454660 G A RFC5 Missense_Mutation p.E10K 0.25 tolerated(0.2) benign(0.001) TCGA-P6-A5OH-01 12 2912330 2912330 C G FKBP4 Missense_Mutation p.A429G 0.27 tolerated(0.41) benign(0.001) TCGA-P6-A5OH-01 12 30783824 30783824 A T IPO8 Missense_Mutation p.F1028L 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-P6-A5OH-01 12 51451824 51451824 C G LETMD1 Missense_Mutation p.L322V 0.20 tolerated(0.25) benign(0.088) TCGA-P6-A5OH-01 12 56435927 56435928 CT - RPS26 5'UTR 0.22 TCGA-P6-A5OH-01 12 56694087 56694087 G C CS 5'UTR 0.16 TCGA-P6-A5OH-01 12 57594933 57594933 T A LRP1 Missense_Mutation p.C3448S 0.08 probably_damaging(0.994) TCGA-P6-A5OH-01 12 67691276 67691276 G C CAND1 Missense_Mutation p.R194T 0.20 deleterious(0) probably_damaging(0.974) TCGA-P6-A5OH-01 12 7177252 7177252 T A C1S Missense_Mutation p.F455Y 0.22 deleterious(0) probably_damaging(0.988) TCGA-P6-A5OH-01 12 91347423 91347423 G A CCER1 Missense_Mutation p.S366L 0.04 deleterious(0) unknown(0) TCGA-P6-A5OH-01 13 103389045 103389045 C T CCDC168 Missense_Mutation p.E39K 0.24 tolerated(1) possibly_damaging(0.486) TCGA-P6-A5OH-01 13 52606975 52606975 G C UTP14C 3'UTR 0.30 TCGA-P6-A5OH-01 14 100404174 100404174 C T EML1 Nonsense_Mutation p.Q725* 0.21 TCGA-P6-A5OH-01 14 104644984 104644984 G T KIF26A Silent p.P1736P 0.21 TCGA-P6-A5OH-01 14 28734083 28734083 C A BNIP3P1 RNA 0.16 TCGA-P6-A5OH-01 14 51561207 51561207 G T TRIM9 Missense_Mutation p.L151M 0.07 tolerated(0.36) possibly_damaging(0.893) TCGA-P6-A5OH-01 14 55611906 55611906 C T LGALS3 Missense_Mutation p.R224W 0.27 deleterious(0) probably_damaging(1) TCGA-P6-A5OH-01 14 81259439 81259439 G C CEP128 Missense_Mutation p.L409V 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-P6-A5OH-01 14 94510351 94510353 CTT - OTUB2 In_Frame_Del p.L86del 0.26 TCGA-P6-A5OH-01 15 24921967 24921967 C A NPAP1 Missense_Mutation p.P318H 0.32 deleterious(0.04) probably_damaging(0.984) TCGA-P6-A5OH-01 15 54542551 54542551 G T UNC13C Missense_Mutation p.W1119C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-P6-A5OH-01 15 74467204 74467204 A G ISLR Missense_Mutation p.Q2R 0.33 tolerated(0.55) possibly_damaging(0.775) TCGA-P6-A5OH-01 15 75809664 75809665 AT - PTPN9 Frame_Shift_Del p.M155Vfs*4 0.24 TCGA-P6-A5OH-01 16 1417283 1417283 C T UNKL Missense_Mutation p.R616Q 0.09 tolerated(0.1) benign(0.382) TCGA-P6-A5OH-01 16 3705910 3705910 G C DNASE1 Missense_Mutation p.V70L 0.24 tolerated(0.07) probably_damaging(0.998) TCGA-P6-A5OH-01 16 50326734 50326734 C T ADCY7 Nonsense_Mutation p.Q229* 0.28 TCGA-P6-A5OH-01 16 68867311 68867314 CAGA - CDH1 Frame_Shift_Del p.D854Kfs*8 0.19 TCGA-P6-A5OH-01 17 10428659 10428659 A T MYH2 Missense_Mutation p.I1515N 0.31 deleterious(0) probably_damaging(0.996) TCGA-P6-A5OH-01 17 13400090 13400090 C G HS3ST3A1 Missense_Mutation p.K215N 0.03 deleterious(0) probably_damaging(1) TCGA-P6-A5OH-01 17 16285604 16285604 A G UBB Missense_Mutation p.D128G 0.19 deleterious(0.04) benign(0.182) TCGA-P6-A5OH-01 17 21322277 21322277 C A KCNJ12 3'UTR 0.29 TCGA-P6-A5OH-01 17 27064883 27064883 G A NEK8 Silent p.S312S 0.14 TCGA-P6-A5OH-01 17 39974745 39974745 C G FKBP10 Missense_Mutation p.I231M 0.30 tolerated(0.1) possibly_damaging(0.633) TCGA-P6-A5OH-01 17 40963676 40963676 T C BECN1 Missense_Mutation p.Y394C 0.28 deleterious(0) probably_damaging(0.995) TCGA-P6-A5OH-01 17 60779069 60779069 C T MARCH10 Missense_Mutation p.V808I 0.13 tolerated_low_confidence(0.9) benign(0.001) TCGA-P6-A5OH-01 17 72740494 72740494 C T RAB37 Silent p.I143I 0.08 TCGA-P6-A5OH-01 17 72862635 72862635 C G FDXR Missense_Mutation p.G152A 0.25 deleterious(0) probably_damaging(0.99) TCGA-P6-A5OH-01 17 76424635 76424635 C - DNAH17 Frame_Shift_Del p.A4181Qfs*14 0.26 TCGA-P6-A5OH-01 17 7760499 7760499 G A LSMD1 Silent p.R81R 0.21 TCGA-P6-A5OH-01 17 79410879 79410881 GAG - RP11-1055B8.7 In_Frame_Del p.E756del 0.10 TCGA-P6-A5OH-01 17 80206823 80206823 G T CSNK1D Silent p.R375R 0.11 TCGA-P6-A5OH-01 17 81042794 81042795 AC - METRNL Intron 0.23 TCGA-P6-A5OH-01 18 14763720 14763720 C A ANKRD30B Missense_Mutation p.P286T 0.20 deleterious(0.04) possibly_damaging(0.546) TCGA-P6-A5OH-01 18 31323513 31323513 A T ASXL3 Missense_Mutation p.N1234I 0.36 possibly_damaging(0.839) TCGA-P6-A5OH-01 18 42531586 42531586 G A SETBP1 Missense_Mutation p.V761M 0.18 deleterious(0) probably_damaging(0.998) TCGA-P6-A5OH-01 18 61587036 61587036 C T SERPINB10 Silent p.D129D 0.14 TCGA-P6-A5OH-01 18 63547655 63547655 T C CDH7 Missense_Mutation p.V628A 0.06 tolerated(0.41) benign(0.002) TCGA-P6-A5OH-01 19 10600462 10600462 C T KEAP1 Missense_Mutation p.V465M 0.12 deleterious(0) probably_damaging(0.998) TCGA-P6-A5OH-01 19 11097013 11097013 C T SMARCA4 Silent p.G168G 0.11 TCGA-P6-A5OH-01 19 11352426 11352426 C T C19orf80 3'UTR 0.09 TCGA-P6-A5OH-01 19 15284881 15284881 G A NOTCH3 Silent p.I1578I 0.20 TCGA-P6-A5OH-01 19 31770605 31770605 G A TSHZ3 Missense_Mutation p.P32S 0.12 tolerated(0.57) benign(0.014) TCGA-P6-A5OH-01 19 33579080 33579080 T A GPATCH1 Silent p.T38T 0.22 TCGA-P6-A5OH-01 19 41509976 41509976 T C CYP2B6 Missense_Mutation p.V81A 0.13 deleterious(0.04) benign(0.025) TCGA-P6-A5OH-01 19 4168347 4168347 G A CREB3L3 Splice_Site p.X239_splice 0.34 TCGA-P6-A5OH-01 19 42270108 42270108 T C CEACAM6 Missense_Mutation p.S326P 0.10 tolerated(0.31) benign(0.015) TCGA-P6-A5OH-01 19 42354402 42354402 C G DMRTC2 Missense_Mutation p.P260A 0.15 deleterious(0.03) benign(0.17) TCGA-P6-A5OH-01 19 42795782 42795782 T A CIC Missense_Mutation p.V924E 0.20 probably_damaging(0.954) TCGA-P6-A5OH-01 19 44302693 44302694 - CC LYPD5 Frame_Shift_Ins p.D144Gfs*28 0.12 TCGA-P6-A5OH-01 19 4818486 4818486 C G TICAM1 5'UTR 0.13 TCGA-P6-A5OH-01 19 50157674 50157674 C G SCAF1 Missense_Mutation p.Q1129E 0.19 benign(0.092) TCGA-P6-A5OH-01 19 5041154 5041154 T C KDM4B Silent p.C108C 0.09 TCGA-P6-A5OH-01 19 54849247 54849247 C T LILRA4 Silent p.V205V 0.16 TCGA-P6-A5OH-01 19 57335765 57335765 C G PEG3 Missense_Mutation p.E87Q 0.27 tolerated(0.05) possibly_damaging(0.87) TCGA-P6-A5OH-01 19 6684638 6684638 C T C3 Silent p.K1351K 0.06 TCGA-P6-A5OH-01 1 153800736 153800736 T A GATAD2B Nonsense_Mutation p.K30* 0.30 TCGA-P6-A5OH-01 1 155023359 155023359 C G DCST1 3'UTR 0.24 TCGA-P6-A5OH-01 1 158059505 158059505 C A KIRREL Intron 0.18 TCGA-P6-A5OH-01 1 159170626 159170626 G A CADM3 Missense_Mutation p.D405N 0.30 deleterious(0) benign(0.085) TCGA-P6-A5OH-01 1 161166340 161166340 G A ADAMTS4 Intron 0.29 TCGA-P6-A5OH-01 1 167095939 167095939 G C DUSP27 Missense_Mutation p.G524A 0.05 tolerated(0.43) benign(0) TCGA-P6-A5OH-01 1 182525184 182525184 G C RGSL1 Missense_Mutation p.E1075Q 0.26 deleterious_low_confidence(0.02) benign(0.273) TCGA-P6-A5OH-01 1 205890762 205890762 G T SLC26A9 Missense_Mutation p.H663N 0.29 deleterious(0.01) probably_damaging(1) TCGA-P6-A5OH-01 1 218609421 218609421 C G TGFB2 Silent p.S316S 0.12 TCGA-P6-A5OH-01 1 225600179 225600179 T C LBR Missense_Mutation p.N354S 0.18 tolerated(0.78) benign(0.004) TCGA-P6-A5OH-01 1 226253533 226253533 T G H3F3A Intron 0.27 TCGA-P6-A5OH-01 1 27736665 27736665 G A WASF2 Missense_Mutation p.A287V 0.25 tolerated(0.16) unknown(0) TCGA-P6-A5OH-01 1 39920766 39920766 T A MACF1 Missense_Mutation p.H4965Q 0.07 probably_damaging(0.999) TCGA-P6-A5OH-01 1 44134891 44134891 G A KDM4A Silent p.T428T 0.22 TCGA-P6-A5OH-01 1 61554105 61554105 T A NFIA Silent p.V149V 0.14 TCGA-P6-A5OH-01 1 61554106 61554106 C T NFIA Missense_Mutation p.L150F 0.15 deleterious(0) probably_damaging(0.994) TCGA-P6-A5OH-01 20 39746844 39746844 A T TOP1 Missense_Mutation p.N620Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-P6-A5OH-01 20 39794128 39794128 G T PLCG1 Missense_Mutation p.K516N 0.19 deleterious(0.03) possibly_damaging(0.792) TCGA-P6-A5OH-01 20 43945172 43945172 C T RBPJL Missense_Mutation p.A411V 0.06 deleterious(0) benign(0.322) TCGA-P6-A5OH-01 20 44505469 44505472 TATT - ZSWIM3 Frame_Shift_Del p.F92Sfs*4 0.24 TCGA-P6-A5OH-01 20 60294200 60294200 C T RP11-429E11.3 Silent p.Q9Q 0.14 TCGA-P6-A5OH-01 21 15592023 15592023 C A RBM11 Missense_Mutation p.P79Q 0.03 deleterious(0.01) probably_damaging(1) TCGA-P6-A5OH-01 22 21150535 21150535 C G PI4KA Missense_Mutation p.V726L 0.27 tolerated(0.75) benign(0.001) TCGA-P6-A5OH-01 22 39410283 39410283 C T APOBEC3C 5'UTR 0.39 TCGA-P6-A5OH-01 22 43289603 43289603 C T PACSIN2 Missense_Mutation p.R26Q 0.18 deleterious(0.02) probably_damaging(0.927) TCGA-P6-A5OH-01 2 100167958 100167958 C T AFF3 Missense_Mutation p.R1245Q 0.28 deleterious(0) probably_damaging(0.935) TCGA-P6-A5OH-01 2 11780671 11780671 G C GREB1 3'UTR 0.25 TCGA-P6-A5OH-01 2 220250725 220250725 G C DNPEP Missense_Mutation p.I185M 0.21 tolerated(0.1) benign(0.101) TCGA-P6-A5OH-01 2 48010362 48010362 C T MSH6 5'UTR 0.07 TCGA-P6-A5OH-01 2 68873425 68873425 A G PROKR1 Missense_Mutation p.I158V 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-P6-A5OH-01 2 75115104 75115104 G T HK2 Missense_Mutation p.G765V 0.15 deleterious(0) probably_damaging(1) TCGA-P6-A5OH-01 2 85553698 85553700 AAG - TGOLN2 In_Frame_Del p.F386del 0.18 TCGA-P6-A5OH-01 3 123247281 123247281 C T PTPLB Silent p.V111V 0.15 TCGA-P6-A5OH-01 3 130737507 130737507 C A ASTE1 Missense_Mutation p.Q452H 0.10 tolerated(0.16) benign(0.002) TCGA-P6-A5OH-01 3 169558017 169558017 G A LRRC31 Missense_Mutation p.T471I 0.11 deleterious(0.01) benign(0.345) TCGA-P6-A5OH-01 3 183756600 183756600 G A HTR3D Missense_Mutation p.G401D 0.15 tolerated(0.24) benign(0.102) TCGA-P6-A5OH-01 3 42799655 42799655 G A CCDC13 Silent p.H61H 0.22 TCGA-P6-A5OH-01 3 45776839 45776839 C T SACM1L Missense_Mutation p.R405C 0.29 deleterious(0) probably_damaging(0.955) TCGA-P6-A5OH-01 3 47455478 47455481 CTGT - SCAP Frame_Shift_Del p.T1235Sfs*? 0.32 TCGA-P6-A5OH-01 3 53844133 53844133 G C CACNA1D Silent p.L2020L 0.21 TCGA-P6-A5OH-01 3 81627176 81627176 C A GBE1 Silent p.L506L 0.20 TCGA-P6-A5OH-01 3 9988097 9988097 G A PRRT3 Silent p.R920R 0.25 TCGA-P6-A5OH-01 4 106159246 106159246 T A TET2 Intron 0.28 TCGA-P6-A5OH-01 4 113352657 113352657 G A ALPK1 Missense_Mutation p.E652K 0.13 tolerated(0.89) benign(0.001) TCGA-P6-A5OH-01 4 128628123 128628123 A T INTU Missense_Mutation p.K757M 0.15 deleterious(0) probably_damaging(0.981) TCGA-P6-A5OH-01 4 134072249 134072249 T C PCDH10 Silent p.Y318Y 0.26 TCGA-P6-A5OH-01 4 147830303 147830303 T G TTC29 Missense_Mutation p.D92A 0.21 deleterious(0.02) benign(0.065) TCGA-P6-A5OH-01 4 25760664 25760664 G A SEL1L3 Silent p.I994I 0.44 TCGA-P6-A5OH-01 4 41987239 41987240 - G DCAF4L1 3'UTR 0.34 TCGA-P6-A5OH-01 4 6114570 6114570 T C JAKMIP1 Missense_Mutation p.K3R 0.33 tolerated(0.09) benign(0.081) TCGA-P6-A5OH-01 5 115361819 115361819 G C AQPEP 3'UTR 0.17 TCGA-P6-A5OH-01 5 121487769 121487769 C G ZNF474 Missense_Mutation p.N28K 0.21 deleterious(0.02) benign(0.016) TCGA-P6-A5OH-01 5 129241282 129241282 T C CHSY3 Missense_Mutation p.Y254H 0.14 deleterious(0) probably_damaging(0.987) TCGA-P6-A5OH-01 5 140221852 140221852 T - PCDHA8 Frame_Shift_Del p.Y316Tfs*22 0.22 TCGA-P6-A5OH-01 5 140255507 140255507 T A PCDHA12 Silent p.S150S 0.20 TCGA-P6-A5OH-01 5 140594583 140594583 T C PCDHB13 Silent p.N296N 0.24 TCGA-P6-A5OH-01 5 140774156 140774156 G A PCDHGA8 Silent p.V592V 0.18 TCGA-P6-A5OH-01 5 140799544 140799544 G A PCDHGB7 Silent p.A706A 0.16 TCGA-P6-A5OH-01 5 143853595 143853595 T C KCTD16 Missense_Mutation p.F402S 0.07 deleterious(0) probably_damaging(0.994) TCGA-P6-A5OH-01 5 147820759 147820759 C G FBXO38 Missense_Mutation p.P1041R 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-P6-A5OH-01 5 176305481 176305481 C G UNC5A Missense_Mutation p.I675M 0.13 deleterious(0) probably_damaging(0.935) TCGA-P6-A5OH-01 5 176885468 176885468 T G DBN1 Missense_Mutation p.D458A 0.19 tolerated_low_confidence(0.35) benign(0.001) TCGA-P6-A5OH-01 5 176894041 176894041 T G DBN1 Missense_Mutation p.E195A 0.10 deleterious(0.02) probably_damaging(0.968) TCGA-P6-A5OH-01 5 38418285 38418285 C T EGFLAM Missense_Mutation p.L538F 0.17 tolerated(0.08) probably_damaging(1) TCGA-P6-A5OH-01 5 74639696 74639698 ATT - HMGCR In_Frame_Del p.I64del 0.13 TCGA-P6-A5OH-01 5 90055402 90055402 G C GPR98 Missense_Mutation p.K4039N 0.08 probably_damaging(0.937) TCGA-P6-A5OH-01 6 31630170 31630170 C T GPANK1 Missense_Mutation p.R315Q 0.14 tolerated(0.43) benign(0.07) TCGA-P6-A5OH-01 6 31940267 31940267 G C STK19 Missense_Mutation p.D137H 0.24 tolerated(0.08) benign(0.016) TCGA-P6-A5OH-01 6 33651116 33651116 C G ITPR3 Missense_Mutation p.P1577R 0.28 tolerated(0.32) benign(0.04) TCGA-P6-A5OH-01 6 49456158 49456158 G T CENPQ Nonsense_Mutation p.E191* 0.16 TCGA-P6-A5OH-01 6 56391195 56391195 C A DST Silent p.V3408V 0.26 TCGA-P6-A5OH-01 7 100800053 100800053 G C AP1S1 Missense_Mutation p.R61T 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-P6-A5OH-01 7 112724050 112724050 A G GPR85 Missense_Mutation p.W243R 0.05 deleterious(0) possibly_damaging(0.874) TCGA-P6-A5OH-01 7 119915231 119915231 C T KCND2 Missense_Mutation p.T182M 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-P6-A5OH-01 7 36436004 36436006 CAG - ANLN In_Frame_Del p.Q51del 0.27 TCGA-P6-A5OH-01 7 42005406 42005406 C T GLI3 Missense_Mutation p.E1089K 0.03 deleterious(0.02) probably_damaging(0.913) TCGA-P6-A5OH-01 7 73101340 73101340 G C WBSCR22 Missense_Mutation p.D93H 0.04 deleterious(0) probably_damaging(0.984) TCGA-P6-A5OH-01 8 37686785 37686785 C T GPR124 Silent p.L139L 0.18 TCGA-P6-A5OH-01 9 113169657 113169657 A G SVEP1 Silent p.Y2741Y 0.16 TCGA-P6-A5OH-01 9 130572350 130572350 G A FPGS Missense_Mutation p.D418N 0.23 tolerated(0.07) benign(0.069) TCGA-P6-A5OH-01 9 137704528 137704528 A T COL5A1 Silent p.G1274G 0.25 TCGA-P6-A5OH-01 9 2192779 2192779 C G SMARCA2 3'UTR 0.24 TCGA-P6-A5OH-01 9 6328653 6328653 G C TPD52L3 Missense_Mutation p.E20Q 0.18 tolerated(0.25) benign(0.108) TCGA-P6-A5OH-01 9 79933239 79933241 CTA - VPS13A In_Frame_Del p.T1683del 0.17 TCGA-P6-A5OH-01 9 86616405 86616405 G C RMI1 Missense_Mutation p.L168F 0.12 tolerated(0.06) probably_damaging(0.961) TCGA-P6-A5OH-01 9 96318860 96318860 T C FAM120A Missense_Mutation p.L824P 0.12 deleterious(0) probably_damaging(0.996) TCGA-P6-A5OH-01 X 107320488 107320488 G C VSIG1 Missense_Mutation p.E383D 0.31 tolerated_low_confidence(0.14) unknown(0) TCGA-P6-A5OH-01 X 119249707 119249707 G T RHOXF1 Missense_Mutation p.S22R 0.08 tolerated(0.69) benign(0.027) TCGA-P6-A5OH-01 X 125685583 125685583 C T DCAF12L1 Missense_Mutation p.D337N 0.05 tolerated(0.34) benign(0.017) TCGA-P6-A5OH-01 X 125685622 125685622 C T DCAF12L1 Missense_Mutation p.G324S 0.06 deleterious(0) probably_damaging(0.983) TCGA-P6-A5OH-01 X 6452462 6452462 G T VCX3A Missense_Mutation p.P26Q 0.18 tolerated_low_confidence(0.14) unknown(0) TCGA-P6-A5OH-01 X 75003782 75003782 T G MAGEE2 Missense_Mutation p.I369L 0.22 tolerated(0.17) probably_damaging(0.956) TCGA-PA-A5YG-01 12 108589790 108589790 G T WSCD2 Missense_Mutation p.G61C 0.22 deleterious(0.01) possibly_damaging(0.823) TCGA-PA-A5YG-01 12 51072495 51072495 A G DIP2B Missense_Mutation p.E317G 0.10 deleterious(0) probably_damaging(0.997) TCGA-PA-A5YG-01 15 79587017 79587017 C T ANKRD34C Missense_Mutation p.P464L 0.06 deleterious(0) probably_damaging(1) TCGA-PA-A5YG-01 16 29884982 29884982 C T SEZ6L2 Missense_Mutation p.V725I 0.45 tolerated(0.19) benign(0.081) TCGA-PA-A5YG-01 17 39021191 39021191 C T KRT12 Missense_Mutation p.R225H 0.43 tolerated(0.36) benign(0.061) TCGA-PA-A5YG-01 22 31495743 31495743 C T SMTN Nonsense_Mutation p.Q822* 0.04 TCGA-PA-A5YG-01 22 37462261 37462261 C T TMPRSS6 Silent p.P765P 0.25 TCGA-PA-A5YG-01 2 107423245 107423245 C A ST6GAL2 Missense_Mutation p.Q493H 0.18 probably_damaging(0.997) TCGA-PA-A5YG-01 2 24951320 24951320 C T NCOA1 Missense_Mutation p.A954V 0.41 deleterious(0) possibly_damaging(0.881) TCGA-PA-A5YG-01 3 113563495 113563495 G A GRAMD1C Nonsense_Mutation p.W58* 0.10 TCGA-PA-A5YG-01 9 114195628 114195628 T C KIAA0368 Missense_Mutation p.I423V 0.05 tolerated(0.07) benign(0.166) TCGA-PK-A5H8-01 10 111879036 111879036 A G ADD3 Missense_Mutation p.Y262C 0.36 tolerated(0.08) benign(0.26) TCGA-PK-A5H8-01 10 85992141 85992141 G T LRIT1 Silent p.R472R 0.05 TCGA-PK-A5H8-01 11 34104425 34104425 G T CAPRIN1 Splice_Site p.X293_splice 0.43 TCGA-PK-A5H8-01 11 48347234 48347234 T C OR4C3 Missense_Mutation p.Y248H 0.06 tolerated(0.56) benign(0.002) TCGA-PK-A5H8-01 11 65487900 65487900 G T RNASEH2C Intron 0.86 TCGA-PK-A5H8-01 12 20766633 20766633 A T PDE3A Missense_Mutation p.K423M 0.49 deleterious(0) probably_damaging(0.968) TCGA-PK-A5H8-01 15 54307147 54307147 C G UNC13C Missense_Mutation p.L683V 0.10 tolerated_low_confidence(0.2) benign(0.021) TCGA-PK-A5H8-01 16 71509024 71509024 C - ZNF19 3'UTR 0.22 TCGA-PK-A5H8-01 17 73806016 73806016 G A UNK Missense_Mutation p.D94N 0.04 tolerated(0.05) benign(0.132) TCGA-PK-A5H8-01 19 40520583 40520583 A G ZNF546 Missense_Mutation p.Y469C 0.43 deleterious(0) probably_damaging(0.936) TCGA-PK-A5H8-01 19 56012011 56012011 G A SSC5D Silent p.R819R 0.06 TCGA-PK-A5H8-01 19 57051018 57051018 T C ZFP28 Missense_Mutation p.L78P 0.50 tolerated(0.07) benign(0.002) TCGA-PK-A5H8-01 19 5744509 5744509 G T CATSPERD Silent p.V215V 0.06 TCGA-PK-A5H8-01 1 33478719 33478719 T C AK2 3'UTR 0.62 TCGA-PK-A5H8-01 1 47746485 47746485 C T STIL Missense_Mutation p.E549K 0.30 tolerated(0.2) benign(0.012) TCGA-PK-A5H8-01 1 55307650 55307650 G T C1orf177 3'UTR 0.91 TCGA-PK-A5H8-01 20 2384245 2384245 C T TGM6 Missense_Mutation p.P371L 0.24 deleterious(0) probably_damaging(1) TCGA-PK-A5H8-01 2 187521095 187521095 G A ITGAV Silent p.L562L 0.38 TCGA-PK-A5H8-01 2 242396172 242396172 G C FARP2 Silent p.T474T 0.92 TCGA-PK-A5H8-01 3 50392898 50392900 TCA - TMEM115 In_Frame_Del p.D310del 0.28 TCGA-PK-A5H8-01 4 109861707 109861707 C A COL25A1 Missense_Mutation p.M220I 0.06 tolerated(0.28) unknown(0) TCGA-PK-A5H8-01 4 87643581 87643581 A C PTPN13 Missense_Mutation p.K534N 0.44 tolerated(0.06) probably_damaging(1) TCGA-PK-A5H8-01 6 155469331 155469337 GACACGC - TIAM2 Frame_Shift_Del p.D631Cfs*4 0.18 TCGA-PK-A5H8-01 6 36298263 36298263 G T C6orf222 Missense_Mutation p.H69N 0.26 tolerated(0.07) benign(0.003) TCGA-PK-A5H8-01 6 55990909 55990909 G T COL21A1 Silent p.G527G 0.23 TCGA-PK-A5H8-01 7 108205172 108205172 T C THAP5 Silent p.Q217Q 0.18 TCGA-PK-A5H8-01 7 92027761 92027761 T G ANKIB1 Missense_Mutation p.M923R 0.50 deleterious_low_confidence(0.02) benign(0) TCGA-PK-A5H8-01 8 90777603 90777603 G C RIPK2 Missense_Mutation p.R121T 0.53 deleterious(0) probably_damaging(0.992) TCGA-PK-A5H8-01 9 103008983 103008983 G T INVS Missense_Mutation p.G331V 0.10 deleterious(0.01) possibly_damaging(0.731) TCGA-PK-A5H8-01 9 131719265 131719266 - GT RP11-101E3.5 Frame_Shift_Ins p.Y117Vfs*? 0.31 TCGA-PK-A5H8-01 X 102983144 102983144 T C GLRA4 5'UTR 0.91 TCGA-PK-A5H8-01 X 70321291 70321294 CCTC - FOXO4 Frame_Shift_Del p.S405Vfs*14 0.48 TCGA-PK-A5H8-01 X 83128178 83128178 A G CYLC1 Silent p.R154R 0.97 TCGA-PK-A5H9-01 10 90665212 90665212 G T STAMBPL1 Missense_Mutation p.A15S 0.06 tolerated(0.06) probably_damaging(0.997) TCGA-PK-A5H9-01 11 74429769 74429769 G T CHRDL2 Nonsense_Mutation p.S64* 0.06 TCGA-PK-A5H9-01 14 31765136 31765136 A G RP11-596D21.1 Intron 0.27 TCGA-PK-A5H9-01 15 75977087 75977087 G T CSPG4 Missense_Mutation p.T1480K 0.14 deleterious(0.02) benign(0.056) TCGA-PK-A5H9-01 17 7752668 7752668 T G KDM6B Missense_Mutation p.L1021R 0.04 probably_damaging(0.996) TCGA-PK-A5H9-01 18 21703901 21703901 G A TTC39C Silent p.V430V 0.20 TCGA-PK-A5H9-01 19 4818321 4818321 G A TICAM1 Silent p.L23L 0.14 TCGA-PK-A5H9-01 19 7506565 7506565 C A ARHGEF18 Missense_Mutation p.A190D 0.15 tolerated(0.06) benign(0.347) TCGA-PK-A5H9-01 1 12884876 12884876 A T PRAMEF11 Nonsense_Mutation p.L412* 0.14 TCGA-PK-A5H9-01 1 152281825 152281825 G T FLG Missense_Mutation p.T1846N 0.34 benign(0.403) TCGA-PK-A5H9-01 1 156703253 156703253 C T RRNAD1 Nonsense_Mutation p.Q193* 0.12 TCGA-PK-A5H9-01 1 24186340 24186340 T G FUCA1 Missense_Mutation p.Y239S 0.16 deleterious(0) probably_damaging(0.99) TCGA-PK-A5H9-01 20 9453937 9453937 G A PLCB4 Silent p.K1128K 0.07 TCGA-PK-A5H9-01 3 9543923 9543923 C A LHFPL4 Missense_Mutation p.C239F 0.39 deleterious_low_confidence(0.03) benign(0.011) TCGA-PK-A5H9-01 5 140174742 140174742 C T PCDHA2 Missense_Mutation p.R65W 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-PK-A5H9-01 5 140596306 140596306 G T PCDHB13 3'UTR 0.07 TCGA-PK-A5H9-01 8 77764392 77764392 G T ZFHX4 Silent p.G1745G 0.07 TCGA-PK-A5H9-01 9 18928282 18928282 C T FAM154A Missense_Mutation p.G398E 0.18 tolerated(1) benign(0.003) TCGA-PK-A5H9-01 9 94842321 94842321 G T SPTLC1 Missense_Mutation p.P135H 0.14 deleterious(0) probably_damaging(1) TCGA-PK-A5H9-01 X 132351801 132351801 G A TFDP3 Missense_Mutation p.R163C 0.14 deleterious(0) possibly_damaging(0.671) TCGA-PK-A5H9-01 X 74742909 74742909 C A ZDHHC15 5'UTR 0.04 TCGA-PK-A5HA-01 10 106214282 106214282 G A CCDC147 Silent p.T871T 0.17 TCGA-PK-A5HA-01 10 111642322 111642322 T C XPNPEP1 Silent p.E303E 0.15 TCGA-PK-A5HA-01 10 15820961 15820961 T G FAM188A 3'UTR 0.07 TCGA-PK-A5HA-01 10 45878015 45878015 G T ALOX5 Missense_Mutation p.D79Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-PK-A5HA-01 11 1031972 1031972 G A MUC6 Missense_Mutation p.T66M 0.69 unknown(0) TCGA-PK-A5HA-01 11 107879975 107879990 CGGGCCCTGGGCCCTG - CUL5 5'UTR 0.65 TCGA-PK-A5HA-01 11 123893785 123893785 C T OR10G9 Silent p.D22D 0.05 TCGA-PK-A5HA-01 11 17485036 17485036 C G ABCC8 Silent p.V176V 0.22 TCGA-PK-A5HA-01 11 55944120 55944120 C T OR5J2 Silent p.V9V 0.30 TCGA-PK-A5HA-01 12 124413963 124413963 C T DNAH10 Nonsense_Mutation p.Q4032* 0.42 TCGA-PK-A5HA-01 12 130919325 130919325 C - RIMBP2 Frame_Shift_Del p.G719Afs*8 0.10 TCGA-PK-A5HA-01 12 13526067 13526067 A G C12orf36 3'UTR 0.33 TCGA-PK-A5HA-01 12 40715839 40715839 C T LRRK2 Nonsense_Mutation p.R1725* 0.11 TCGA-PK-A5HA-01 12 49421629 49421629 T C KMT2D Missense_Mutation p.Y4867C 0.23 unknown(0) TCGA-PK-A5HA-01 12 55422280 55422280 C A NEUROD4 3'UTR 0.44 TCGA-PK-A5HA-01 12 80749522 80749522 C G OTOGL Missense_Mutation p.T1858S 0.06 deleterious(0.01) benign(0.08) TCGA-PK-A5HA-01 12 96252815 96252815 G A SNRPF 5'UTR 0.16 TCGA-PK-A5HA-01 14 23450590 23450590 C T AJUBA Missense_Mutation p.G296R 0.44 tolerated(0.25) probably_damaging(0.98) TCGA-PK-A5HA-01 14 47120953 47120953 C T RPL10L 5'UTR 0.06 TCGA-PK-A5HA-01 15 48460977 48460977 C T MYEF2 Missense_Mutation p.S74N 0.70 tolerated(0.63) benign(0) TCGA-PK-A5HA-01 16 22826384 22826384 C G HS3ST2 Missense_Mutation p.D151E 0.32 deleterious(0) probably_damaging(0.992) TCGA-PK-A5HA-01 16 50707759 50707759 G A SNX20 Missense_Mutation p.A170V 0.19 deleterious(0.01) possibly_damaging(0.597) TCGA-PK-A5HA-01 16 68330375 68330375 T G SLC7A6 Missense_Mutation p.Y410D 0.33 deleterious(0) probably_damaging(0.961) TCGA-PK-A5HA-01 17 12893459 12893459 G T ARHGAP44 Nonsense_Mutation p.E810* 0.73 TCGA-PK-A5HA-01 17 12893460 12893460 A C ARHGAP44 Missense_Mutation p.E810A 0.73 deleterious_low_confidence(0) benign(0.057) TCGA-PK-A5HA-01 17 41008411 41008411 C T AOC3 Silent p.D712D 0.76 TCGA-PK-A5HA-01 18 28934939 28934939 T A DSG1 Missense_Mutation p.I927N 0.64 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HA-01 18 31319098 31319098 C A ASXL3 Missense_Mutation p.S577Y 0.31 benign(0.299) TCGA-PK-A5HA-01 18 5397119 5397119 G T EPB41L3 Missense_Mutation p.Q927K 0.72 tolerated(0.27) benign(0) TCGA-PK-A5HA-01 18 8069961 8069961 C T PTPRM Silent p.S470S 0.07 TCGA-PK-A5HA-01 19 37676152 37676152 C A ZNF585B Missense_Mutation p.V763F 0.36 tolerated(0.07) benign(0.045) TCGA-PK-A5HA-01 19 39899249 39899249 C T ZFP36 Silent p.P303P 0.44 TCGA-PK-A5HA-01 19 50666417 50666417 C A IZUMO2 Missense_Mutation p.G12V 0.08 deleterious(0) unknown(0) TCGA-PK-A5HA-01 19 9047465 9047465 G A MUC16 Missense_Mutation p.S11389L 0.08 benign(0.022) TCGA-PK-A5HA-01 1 10523070 10523070 G C DFFA Intron 0.68 TCGA-PK-A5HA-01 1 158058193 158058193 G T KIRREL Missense_Mutation p.W331C 0.21 deleterious(0) possibly_damaging(0.867) TCGA-PK-A5HA-01 1 160141212 160141212 C T ATP1A4 Silent p.L555L 0.04 TCGA-PK-A5HA-01 1 160460476 160460476 C A SLAMF6 Splice_Site p.X216_splice 0.04 TCGA-PK-A5HA-01 1 160850441 160850441 G A ITLN1 Missense_Mutation p.P208S 0.45 deleterious(0.03) benign(0.426) TCGA-PK-A5HA-01 1 176564267 176564267 G C PAPPA2 Missense_Mutation p.L509F 0.41 deleterious(0) possibly_damaging(0.894) TCGA-PK-A5HA-01 1 204093978 204093978 G A SOX13 Missense_Mutation p.V529M 0.42 tolerated(0.11) benign(0.004) TCGA-PK-A5HA-01 1 210971042 210971042 C G KCNH1 Missense_Mutation p.V575L 0.09 tolerated(0.26) benign(0.063) TCGA-PK-A5HA-01 1 248343508 248343508 T A OR2M2 Missense_Mutation p.I74N 0.18 deleterious(0) possibly_damaging(0.835) TCGA-PK-A5HA-01 1 44685739 44685739 C T DMAP1 Nonsense_Mutation p.R368* 0.33 TCGA-PK-A5HA-01 1 46165768 46165768 G C IPP Missense_Mutation p.S542C 0.07 tolerated(0.05) possibly_damaging(0.612) TCGA-PK-A5HA-01 1 78958569 78958569 C A PTGFR Silent p.A47A 0.71 TCGA-PK-A5HA-01 20 42965710 42965710 C T R3HDML 5'UTR 0.35 TCGA-PK-A5HA-01 22 32589228 32589228 G T RFPL2 Intron 0.57 TCGA-PK-A5HA-01 2 242742905 242742905 C T GAL3ST2 Missense_Mutation p.P174L 0.28 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HA-01 2 26540927 26540927 C G GPR113 Missense_Mutation p.Q81H 0.57 tolerated_low_confidence(0.42) benign(0.029) TCGA-PK-A5HA-01 2 77745739 77745739 T A LRRTM4 Missense_Mutation p.H419L 0.21 tolerated(0.4) benign(0.007) TCGA-PK-A5HA-01 3 13368936 13368936 C G NUP210 Missense_Mutation p.D1430H 0.30 deleterious(0) benign(0.146) TCGA-PK-A5HA-01 3 190321957 190321957 C T IL1RAP Silent p.I35I 0.18 TCGA-PK-A5HA-01 3 45132893 45132893 T A CDCP1 Missense_Mutation p.T589S 0.39 tolerated(0.42) probably_damaging(0.93) TCGA-PK-A5HA-01 3 9860413 9860413 G A TTLL3 Intron 0.14 TCGA-PK-A5HA-01 4 122681582 122681582 G C TMEM155 Missense_Mutation p.P87R 0.23 tolerated_low_confidence(0.18) probably_damaging(0.988) TCGA-PK-A5HA-01 4 186535995 186535995 G A SORBS2 Missense_Mutation p.S1058L 0.12 deleterious(0) probably_damaging(0.941) TCGA-PK-A5HA-01 4 2306391 2306391 C A ZFYVE28 Missense_Mutation p.C559F 0.12 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-PK-A5HA-01 5 132094508 132094508 G A SEPT8 Intron 0.47 TCGA-PK-A5HA-01 5 132545984 132545984 C A FSTL4 Missense_Mutation p.G539C 0.06 deleterious(0.03) possibly_damaging(0.88) TCGA-PK-A5HA-01 5 140590650 140590650 G A PCDHB12 Missense_Mutation p.R724H 0.17 tolerated_low_confidence(0.11) benign(0.359) TCGA-PK-A5HA-01 5 65054536 65054536 G C NLN Missense_Mutation p.E62Q 0.34 tolerated(0.26) benign(0.006) TCGA-PK-A5HA-01 6 10586905 10586905 G A GCNT2 Intron 0.15 TCGA-PK-A5HA-01 6 12125518 12125518 G C HIVEP1 Missense_Mutation p.L1830F 0.31 tolerated(0.25) possibly_damaging(0.904) TCGA-PK-A5HA-01 6 121655604 121655604 T C TBC1D32 5'UTR 0.52 TCGA-PK-A5HA-01 6 133049936 133049936 A G VNN3 Missense_Mutation p.Y161H 0.11 deleterious(0.04) possibly_damaging(0.8) TCGA-PK-A5HA-01 6 159652989 159652989 C A FNDC1 Missense_Mutation p.P482H 0.08 deleterious(0) unknown(0) TCGA-PK-A5HA-01 6 44217213 44217213 A G HSP90AB1 Missense_Mutation p.T83A 0.10 deleterious(0.03) possibly_damaging(0.867) TCGA-PK-A5HA-01 7 150034045 150034045 C T LRRC61 Missense_Mutation p.S32F 0.19 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HA-01 7 6029443 6029443 G T PMS2 Missense_Mutation p.L378M 0.22 tolerated(0.09) possibly_damaging(0.77) TCGA-PK-A5HA-01 8 25364323 25364323 G T CDCA2 Missense_Mutation p.C714F 0.29 tolerated(0.21) benign(0.077) TCGA-PK-A5HA-01 8 69552682 69552682 C T C8orf34 Missense_Mutation p.R393C 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-PK-A5HA-01 9 136338637 136338637 G A SLC2A6 Silent p.G374G 0.45 TCGA-PK-A5HA-01 9 88967902 88967902 A T ZCCHC6 Silent p.A71A 0.41 TCGA-PK-A5HA-01 X 152613908 152613912 ATTTA - ZNF275 3'UTR 0.92 TCGA-PK-A5HB-01 10 100202968 100202968 G A HPS1 Silent p.G10G 0.37 TCGA-PK-A5HB-01 10 101594287 101594287 G A ABCC2 Missense_Mutation p.V1137I 0.41 tolerated(0.27) benign(0.116) TCGA-PK-A5HB-01 10 103310572 103310573 - C BTRC Frame_Shift_Ins p.R594Pfs*27 0.24 TCGA-PK-A5HB-01 10 103867930 103867930 C T LDB1 Missense_Mutation p.A386T 0.40 tolerated(0.58) benign(0.001) TCGA-PK-A5HB-01 10 103900009 103900009 G A PPRC1 Missense_Mutation p.A582T 0.39 tolerated_low_confidence(0.09) benign(0.416) TCGA-PK-A5HB-01 10 105750547 105750547 C T SLK Missense_Mutation p.P89S 0.41 deleterious(0.03) probably_damaging(0.916) TCGA-PK-A5HB-01 10 106675687 106675687 G C SORCS3 Missense_Mutation p.R264S 0.05 deleterious(0) possibly_damaging(0.52) TCGA-PK-A5HB-01 10 111633180 111633180 C T XPNPEP1 Missense_Mutation p.G466D 0.43 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 10 112838493 112838493 A G ADRA2A Missense_Mutation p.S247G 0.38 tolerated(1) benign(0.006) TCGA-PK-A5HB-01 10 114711348 114711348 C G TCF7L2 Silent p.L121L 0.45 TCGA-PK-A5HB-01 10 115891096 115891096 C A C10orf118 Splice_Site p.X638_splice 0.45 TCGA-PK-A5HB-01 10 121259572 121259572 T A RGS10 3'UTR 0.60 TCGA-PK-A5HB-01 10 121259635 121259635 T A RGS10 Missense_Mutation p.Y179F 0.48 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-PK-A5HB-01 10 123324025 123324025 T C FGFR2 Missense_Mutation p.N149D 0.42 tolerated(0.57) benign(0.003) TCGA-PK-A5HB-01 10 124909596 124909596 C T HMX2 Missense_Mutation p.S260L 0.40 deleterious(0.01) possibly_damaging(0.534) TCGA-PK-A5HB-01 10 127555708 127555708 C T DHX32 Silent p.Q109Q 0.38 TCGA-PK-A5HB-01 10 1284298 1284298 C T ADARB2 Silent p.E419E 0.37 TCGA-PK-A5HB-01 10 131565344 131565344 A G MGMT 3'UTR 0.50 TCGA-PK-A5HB-01 10 134219477 134219477 G A PWWP2B Silent p.G491G 0.66 TCGA-PK-A5HB-01 10 134230707 134230707 G A PWWP2B 3'UTR 0.27 TCGA-PK-A5HB-01 10 134942688 134942688 C T GPR123 Silent p.R452R 0.48 TCGA-PK-A5HB-01 10 134980844 134980844 G - KNDC1 Intron 0.52 TCGA-PK-A5HB-01 10 135086884 135086884 G A ADAM8 Silent p.G149G 0.42 TCGA-PK-A5HB-01 10 135379043 135379043 G T SYCE1 5'UTR 0.16 TCGA-PK-A5HB-01 10 16635356 16635356 G A RSU1 3'UTR 0.35 TCGA-PK-A5HB-01 10 16930425 16930425 G T CUBN Missense_Mutation p.H2966N 0.43 tolerated(0.11) possibly_damaging(0.686) TCGA-PK-A5HB-01 10 17024637 17024637 A G CUBN Missense_Mutation p.F1514S 0.49 deleterious(0) probably_damaging(0.988) TCGA-PK-A5HB-01 10 17130173 17130173 T A CUBN Missense_Mutation p.D646V 0.46 deleterious(0.01) probably_damaging(0.919) TCGA-PK-A5HB-01 10 17146555 17146555 A G CUBN Missense_Mutation p.V427A 0.42 tolerated(0.67) benign(0.018) TCGA-PK-A5HB-01 10 24762792 24762792 C - KIAA1217 Frame_Shift_Del p.P496Lfs*26 0.31 TCGA-PK-A5HB-01 10 26589952 26589952 G A GAD2 3'UTR 0.37 TCGA-PK-A5HB-01 10 27324108 27324108 T C ANKRD26 Missense_Mutation p.T1091A 0.52 deleterious(0.02) probably_damaging(0.992) TCGA-PK-A5HB-01 10 27470451 27470451 C T MASTL Missense_Mutation p.A808V 0.42 deleterious(0) probably_damaging(0.936) TCGA-PK-A5HB-01 10 27964211 27964211 A C MKX Missense_Mutation p.S336A 0.38 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-PK-A5HB-01 10 28527593 28527593 C T MPP7 5'UTR 0.61 TCGA-PK-A5HB-01 10 31139259 31139259 C G ZNF438 Missense_Mutation p.R25S 0.49 deleterious(0.01) benign(0.004) TCGA-PK-A5HB-01 10 3205972 3205972 T A PITRM1 Missense_Mutation p.T246S 0.45 tolerated(0.12) possibly_damaging(0.573) TCGA-PK-A5HB-01 10 32557962 32557962 C T EPC1 3'UTR 0.40 TCGA-PK-A5HB-01 10 35929513 35929513 C T FZD8 Missense_Mutation p.G282D 0.51 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 10 37442574 37442574 A G ANKRD30A Missense_Mutation p.I538M 0.14 deleterious(0.02) possibly_damaging(0.703) TCGA-PK-A5HB-01 10 37478469 37478469 A G ANKRD30A Missense_Mutation p.I776M 0.34 deleterious(0.02) probably_damaging(0.924) TCGA-PK-A5HB-01 10 37508025 37508025 G A ANKRD30A Missense_Mutation p.E1073K 0.39 deleterious(0) possibly_damaging(0.636) TCGA-PK-A5HB-01 10 433695 433695 C T DIP2C Missense_Mutation p.G551D 0.43 deleterious(0) possibly_damaging(0.799) TCGA-PK-A5HB-01 10 45869760 45869760 C T ALOX5 Silent p.G11G 0.28 TCGA-PK-A5HB-01 10 45939230 45939230 T A ALOX5 Missense_Mutation p.V543E 0.57 deleterious(0) probably_damaging(0.982) TCGA-PK-A5HB-01 10 46028623 46028623 A G MARCH8 Missense_Mutation p.S13P 0.43 tolerated_low_confidence(0.11) benign(0) TCGA-PK-A5HB-01 10 47000008 47000008 G A GPRIN2 Silent p.P376P 0.23 TCGA-PK-A5HB-01 10 49951020 49951020 T C WDFY4 Missense_Mutation p.L629P 0.32 deleterious(0) probably_damaging(0.954) TCGA-PK-A5HB-01 10 49951058 49951058 A T WDFY4 Nonsense_Mutation p.R642* 0.45 TCGA-PK-A5HB-01 10 5415774 5415774 C - UCN3 Frame_Shift_Del p.I32Sfs*23 0.30 TCGA-PK-A5HB-01 10 55566476 55566476 C T PCDH15 Missense_Mutation p.V1637I 0.35 tolerated_low_confidence(0.19) benign(0.006) TCGA-PK-A5HB-01 10 61718432 61718433 - T C10orf40 5'UTR 0.48 TCGA-PK-A5HB-01 10 63441022 63441022 T C C10orf107 Missense_Mutation p.Y8H 0.59 tolerated(0.27) benign(0.003) TCGA-PK-A5HB-01 10 64159513 64159513 A - ZNF365 Intron 0.44 TCGA-PK-A5HB-01 10 64567229 64567229 G A ADO 3'UTR 0.42 TCGA-PK-A5HB-01 10 70496802 70496802 A G CCAR1 Silent p.Q81Q 0.36 TCGA-PK-A5HB-01 10 71391540 71391540 A T C10orf35 Missense_Mutation p.D14V 0.42 deleterious(0) possibly_damaging(0.696) TCGA-PK-A5HB-01 10 71969033 71969033 T A PPA1 Missense_Mutation p.D218V 0.37 deleterious(0.01) benign(0.062) TCGA-PK-A5HB-01 10 7213881 7213881 C T SFMBT2 Silent p.P797P 0.50 TCGA-PK-A5HB-01 10 72434451 72434451 C T ADAMTS14 Silent p.P74P 0.41 TCGA-PK-A5HB-01 10 73553114 73553114 G A CDH23 5'Flank 0.44 TCGA-PK-A5HB-01 10 75407283 75407283 C T SYNPO2L Missense_Mutation p.M709I 0.39 tolerated_low_confidence(0.37) benign(0.002) TCGA-PK-A5HB-01 10 75408109 75408109 A G SYNPO2L Missense_Mutation p.V434A 0.39 tolerated(0.38) benign(0.001) TCGA-PK-A5HB-01 10 75566103 75566103 A G NDST2 Missense_Mutation p.Y460H 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-PK-A5HB-01 10 75567679 75567679 C T NDST2 Silent p.L156L 0.40 TCGA-PK-A5HB-01 10 76854411 76854411 A G DUSP13 3'Flank 0.39 TCGA-PK-A5HB-01 10 7788557 7788557 C T ITIH2 Silent p.G861G 0.45 TCGA-PK-A5HB-01 10 79581401 79581401 C T DLG5 Nonsense_Mutation p.W947* 0.42 TCGA-PK-A5HB-01 10 79613277 79613277 G A DLG5 Silent p.L233L 0.33 TCGA-PK-A5HB-01 10 81838509 81838510 CA - TMEM254 Frame_Shift_Del p.T19Sfs*67 0.19 TCGA-PK-A5HB-01 10 81927056 81927056 C A ANXA11 Missense_Mutation p.G192V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-PK-A5HB-01 10 88469694 88469694 C T LDB3 Missense_Mutation p.A378V 0.45 tolerated(0.37) benign(0.001) TCGA-PK-A5HB-01 10 88683197 88683197 T A BMPR1A Missense_Mutation p.D469E 0.44 tolerated(0.48) probably_damaging(0.984) TCGA-PK-A5HB-01 10 96006241 96006241 C T PLCE1 Missense_Mutation p.H987Y 0.55 tolerated(0.42) possibly_damaging(0.862) TCGA-PK-A5HB-01 10 97393407 97393407 C G ALDH18A1 Splice_Site p.X187_splice 0.49 TCGA-PK-A5HB-01 10 97920570 97920570 T A ZNF518A RNA 0.45 TCGA-PK-A5HB-01 10 99338087 99338087 A T ANKRD2 Nonsense_Mutation p.K121* 0.41 TCGA-PK-A5HB-01 11 1093250 1093250 C A MUC2 Missense_Mutation p.P1690H 0.10 unknown(0) TCGA-PK-A5HB-01 11 111943748 111943748 G T PIH1D2 Missense_Mutation p.Q51K 0.76 tolerated(0.22) benign(0.004) TCGA-PK-A5HB-01 11 111953575 111953578 AGAG - C11orf57 Frame_Shift_Del p.E256Kfs*7 0.68 TCGA-PK-A5HB-01 11 111957633 111957633 T A SDHD Translation_Start_Site p.M1? 0.76 deleterious(0) probably_damaging(0.959) TCGA-PK-A5HB-01 11 117153198 117153198 C G RNF214 Missense_Mutation p.I597M 0.73 tolerated(0.28) benign(0.019) TCGA-PK-A5HB-01 11 120180235 120180235 G A POU2F3 Silent p.E338E 0.63 TCGA-PK-A5HB-01 11 120531058 120531058 C T GRIK4 Missense_Mutation p.L11F 0.79 tolerated(0.12) benign(0.03) TCGA-PK-A5HB-01 11 121016701 121016701 C T TECTA Silent p.C1327C 0.58 TCGA-PK-A5HB-01 11 129754659 129754659 G C NFRKB Silent p.T266T 0.72 TCGA-PK-A5HB-01 11 134048719 134048719 T C NCAPD3 Missense_Mutation p.H891R 0.06 tolerated(0.22) benign(0.042) TCGA-PK-A5HB-01 11 134147638 134147638 C T GLB1L3 Missense_Mutation p.S65F 0.81 tolerated(0.24) benign(0.008) TCGA-PK-A5HB-01 11 134240273 134240273 G A GLB1L2 Missense_Mutation p.A399T 0.80 tolerated(0.15) benign(0.019) TCGA-PK-A5HB-01 11 18428915 18428915 T G LDHA 3'UTR 0.67 TCGA-PK-A5HB-01 11 18728522 18728522 A T IGSF22 Missense_Mutation p.N1173K 0.79 deleterious(0) possibly_damaging(0.575) TCGA-PK-A5HB-01 11 18765655 18765655 C T PTPN5 Silent p.S63S 0.67 TCGA-PK-A5HB-01 11 33163363 33163363 A T CSTF3 Intron 0.68 TCGA-PK-A5HB-01 11 35641789 35641789 A G FJX1 3'UTR 0.69 TCGA-PK-A5HB-01 11 47701524 47701524 C T AGBL2 Splice_Site p.X672_splice 0.71 TCGA-PK-A5HB-01 11 49831487 49831487 G A RP11-707M1.1 RNA 0.07 TCGA-PK-A5HB-01 11 56310506 56310506 A G OR5M11 Silent p.N76N 0.76 TCGA-PK-A5HB-01 11 61099071 61099071 C T DDB1 Missense_Mutation p.V52I 0.19 tolerated(0.56) benign(0.004) TCGA-PK-A5HB-01 11 61723382 61723382 T A BEST1 Missense_Mutation p.V87D 0.66 deleterious(0) probably_damaging(0.996) TCGA-PK-A5HB-01 11 62931536 62931536 A C SLC22A25 Silent p.A468A 0.76 TCGA-PK-A5HB-01 11 64368345 64368345 C T SLC22A12 Silent p.A511A 0.88 TCGA-PK-A5HB-01 11 6566347 6566347 C T DNHD1 Missense_Mutation p.A1393V 0.79 possibly_damaging(0.876) TCGA-PK-A5HB-01 11 6640575 6640575 C T TPP1 Intron 0.70 TCGA-PK-A5HB-01 11 67817504 67817504 G - TCIRG1 Frame_Shift_Del p.G698Afs*43 0.42 TCGA-PK-A5HB-01 11 67938597 67938597 T A SUV420H1 Missense_Mutation p.T288S 0.72 deleterious(0.02) benign(0.444) TCGA-PK-A5HB-01 11 686974 686974 G A DEAF1 Nonsense_Mutation p.Q230* 0.67 TCGA-PK-A5HB-01 11 72945404 72945404 C T P2RY2 Missense_Mutation p.A67V 0.48 tolerated(0.07) benign(0.317) TCGA-PK-A5HB-01 11 72945486 72945486 C A P2RY2 Silent p.A94A 0.43 TCGA-PK-A5HB-01 11 72945487 72945487 C T P2RY2 Missense_Mutation p.R95C 0.43 tolerated(0.05) possibly_damaging(0.717) TCGA-PK-A5HB-01 11 72945489 72945489 C T P2RY2 Silent p.R95R 0.43 TCGA-PK-A5HB-01 11 73008732 73008732 C A P2RY6 3'UTR 0.47 TCGA-PK-A5HB-01 11 76169377 76169377 G A C11orf30 Silent p.V132V 0.71 TCGA-PK-A5HB-01 11 93488407 93488407 A G C11orf54 Missense_Mutation p.H121R 0.73 tolerated(0.56) benign(0.002) TCGA-PK-A5HB-01 11 94134121 94134121 T C GPR83 Missense_Mutation p.K98R 0.82 deleterious(0.02) possibly_damaging(0.766) TCGA-PK-A5HB-01 12 105150884 105150884 G A CHST11 Missense_Mutation p.C121Y 0.41 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 12 10532370 10532370 C T KLRK1 Missense_Mutation p.C57Y 0.82 tolerated(0.58) benign(0.002) TCGA-PK-A5HB-01 12 10856704 10856704 G A YBX3 Missense_Mutation p.A275V 0.68 tolerated(0.05) benign(0.164) TCGA-PK-A5HB-01 12 109959270 109959270 T C UBE3B Missense_Mutation p.Y760H 0.48 deleterious(0) probably_damaging(0.986) TCGA-PK-A5HB-01 12 109998890 109998890 G A MMAB Missense_Mutation p.S180L 0.51 deleterious(0) possibly_damaging(0.663) TCGA-PK-A5HB-01 12 110221440 110221440 C T TRPV4 Missense_Mutation p.D868N 0.07 tolerated_low_confidence(0.05) benign(0.002) TCGA-PK-A5HB-01 12 112171864 112171864 T C ACAD10 Missense_Mutation p.V542A 0.36 tolerated(0.23) benign(0.24) TCGA-PK-A5HB-01 12 119554810 119554810 G A SRRM4 Missense_Mutation p.R145H 0.48 tolerated_low_confidence(0.5) unknown(0) TCGA-PK-A5HB-01 12 12044052 12044052 G C ETV6 3'UTR 0.83 TCGA-PK-A5HB-01 12 121868110 121868110 A G KDM2B Missense_Mutation p.L1331P 0.46 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 12 122248666 122248666 G A SETD1B Silent p.G605G 0.47 TCGA-PK-A5HB-01 12 122268199 122268199 T A SETD1B 3'UTR 0.50 TCGA-PK-A5HB-01 12 122717402 122717402 G A VPS33A Silent p.L518L 0.51 TCGA-PK-A5HB-01 12 122958256 122958256 C T ZCCHC8 Missense_Mutation p.G638R 0.40 tolerated(0.08) probably_damaging(0.999) TCGA-PK-A5HB-01 12 123679054 123679054 T C MPHOSPH9 Missense_Mutation p.D555G 0.39 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 12 124409717 124409717 G A DNAH10 Missense_Mutation p.V3845M 0.43 possibly_damaging(0.611) TCGA-PK-A5HB-01 12 124498616 124498616 A C ZNF664 3'UTR 0.22 TCGA-PK-A5HB-01 12 12483292 12483292 A C MANSC1 Missense_Mutation p.F322C 0.76 deleterious(0.04) possibly_damaging(0.72) TCGA-PK-A5HB-01 12 12510415 12510415 G C LOH12CR1 Missense_Mutation p.E10D 0.65 tolerated_low_confidence(0.46) benign(0) TCGA-PK-A5HB-01 12 125550233 125550233 G C AACS Missense_Mutation p.A35P 0.32 tolerated(0.21) benign(0.212) TCGA-PK-A5HB-01 12 132401137 132401137 G T ULK1 Splice_Site p.X691_splice 0.53 TCGA-PK-A5HB-01 12 13367530 13367530 C T EMP1 Nonsense_Mutation p.Q127* 0.79 TCGA-PK-A5HB-01 12 14928113 14928113 G A H2AFJ 3'UTR 0.76 TCGA-PK-A5HB-01 12 21654773 21654773 T A GOLT1B 5'UTR 0.72 TCGA-PK-A5HB-01 12 22069967 22069967 G A ABCC9 Silent p.G159G 0.72 TCGA-PK-A5HB-01 12 23818387 23818387 C T SOX5 Missense_Mutation p.A308T 0.81 tolerated(0.06) benign(0.101) TCGA-PK-A5HB-01 12 29446360 29446360 A G FAR2 Missense_Mutation p.N106S 0.43 tolerated(0.63) possibly_damaging(0.454) TCGA-PK-A5HB-01 12 32996207 32996207 G A PKP2 Silent p.G473G 0.42 TCGA-PK-A5HB-01 12 40020033 40020033 C T C12orf40 5'UTR 0.51 TCGA-PK-A5HB-01 12 431710 431710 G A KDM5A Silent p.L767L 1.00 TCGA-PK-A5HB-01 12 4479600 4479600 T C FGF23 Missense_Mutation p.D222G 0.81 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-PK-A5HB-01 12 46591521 46591521 T A SLC38A1 Missense_Mutation p.K448N 0.53 tolerated(0.1) possibly_damaging(0.856) TCGA-PK-A5HB-01 12 46756130 46756130 A T SLC38A2 Silent p.L453L 0.35 TCGA-PK-A5HB-01 12 47629462 47629462 A - PCED1B Frame_Shift_Del p.K206Nfs*231 0.28 TCGA-PK-A5HB-01 12 48383041 48383041 A T COL2A1 Silent p.G364G 0.39 TCGA-PK-A5HB-01 12 49375164 49375164 C - WNT1 Frame_Shift_Del p.H287Tfs*? 0.34 TCGA-PK-A5HB-01 12 49416426 49416426 T C KMT2D Missense_Mutation p.T5429A 0.11 unknown(0) TCGA-PK-A5HB-01 12 49437705 49437705 C T KMT2D Silent p.Q1755Q 0.44 TCGA-PK-A5HB-01 12 49491821 49491821 C T LMBR1L Silent p.V436V 0.32 TCGA-PK-A5HB-01 12 50725578 50725578 A G FAM186A Silent p.L2241L 0.39 TCGA-PK-A5HB-01 12 50867901 50867901 C T LARP4 Missense_Mutation p.A596V 0.41 tolerated(0.14) benign(0.041) TCGA-PK-A5HB-01 12 52777465 52777465 G A KRT84 Missense_Mutation p.R222W 0.52 deleterious(0.01) probably_damaging(0.986) TCGA-PK-A5HB-01 12 53673526 53673526 C T ESPL1 Missense_Mutation p.A792V 0.41 deleterious(0) possibly_damaging(0.78) TCGA-PK-A5HB-01 12 54674505 54674505 C T HNRNPA1 5'Flank 0.35 TCGA-PK-A5HB-01 12 55523992 55523992 G A OR9K2 Missense_Mutation p.R147H 0.36 deleterious(0.01) possibly_damaging(0.543) TCGA-PK-A5HB-01 12 56347513 56347514 - C DGKA Frame_Shift_Ins p.R726Pfs*79 0.33 TCGA-PK-A5HB-01 12 56397807 56397807 C T SUOX Missense_Mutation p.P212S 0.39 tolerated(0.18) benign(0.001) TCGA-PK-A5HB-01 12 56638930 56638934 AAAAC CAAAAG ANKRD52 Frame_Shift_Ins p.S817Cfs*17 0.27 TCGA-PK-A5HB-01 12 56676360 56676360 C G CS Missense_Mutation p.R144S 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-PK-A5HB-01 12 56994876 56994876 C T BAZ2A Missense_Mutation p.C1436Y 0.46 tolerated(0.15) benign(0.019) TCGA-PK-A5HB-01 12 57113354 57113354 C T NACA Missense_Mutation p.D611N 0.53 tolerated_low_confidence(0.38) benign(0.001) TCGA-PK-A5HB-01 12 57167811 57167811 G A HSD17B6 Missense_Mutation p.A59T 0.47 deleterious(0.05) possibly_damaging(0.562) TCGA-PK-A5HB-01 12 57397418 57397418 G A ZBTB39 Silent p.I428I 0.50 TCGA-PK-A5HB-01 12 57493582 57493582 A G STAT6 Missense_Mutation p.I571T 0.48 deleterious(0) probably_damaging(0.986) TCGA-PK-A5HB-01 12 57560791 57560791 A G LRP1 Missense_Mutation p.D959G 0.44 probably_damaging(0.999) TCGA-PK-A5HB-01 12 57579466 57579466 C T LRP1 Missense_Mutation p.R2206C 0.52 probably_damaging(0.998) TCGA-PK-A5HB-01 12 57873549 57873549 T C ARHGAP9 5'UTR 0.35 TCGA-PK-A5HB-01 12 62783220 62783220 G A USP15 Missense_Mutation p.V495I 0.48 tolerated(0.34) benign(0.005) TCGA-PK-A5HB-01 12 63544037 63544037 C T AVPR1A Missense_Mutation p.V194M 0.43 deleterious(0.01) probably_damaging(0.916) TCGA-PK-A5HB-01 12 65471560 65471560 G A WIF1 Silent p.V121V 0.42 TCGA-PK-A5HB-01 12 6575152 6575152 T C VAMP1 Missense_Mutation p.I48M 0.82 tolerated(1) benign(0.002) TCGA-PK-A5HB-01 12 65857056 65857056 G A MSRB3 Missense_Mutation p.G178D 0.47 tolerated_low_confidence(0.11) benign(0.003) TCGA-PK-A5HB-01 12 6626132 6626132 G C NCAPD2 Missense_Mutation p.V376L 0.79 deleterious(0.01) benign(0.045) TCGA-PK-A5HB-01 12 66788074 66788074 C - GRIP1 Frame_Shift_Del p.G632Afs*14 0.26 TCGA-PK-A5HB-01 12 67696266 67696266 G A CAND1 Silent p.E388E 0.43 TCGA-PK-A5HB-01 12 68051174 68051174 T A DYRK2 Missense_Mutation p.Y163N 0.51 deleterious(0.02) possibly_damaging(0.862) TCGA-PK-A5HB-01 12 6954905 6954905 A T GNB3 Silent p.L285L 0.74 TCGA-PK-A5HB-01 12 69968573 69968573 G A FRS2 Silent p.T455T 0.40 TCGA-PK-A5HB-01 12 7055879 7055879 C A PTPN6 5'Flank 0.67 TCGA-PK-A5HB-01 12 77417760 77417760 C T E2F7 3'UTR 0.30 TCGA-PK-A5HB-01 12 78334110 78334110 C G NAV3 Missense_Mutation p.D85E 0.49 deleterious(0) probably_damaging(0.975) TCGA-PK-A5HB-01 12 7898983 7898983 G A CLEC4C Missense_Mutation p.S23F 0.78 tolerated(0.34) benign(0.001) TCGA-PK-A5HB-01 12 80201041 80201042 - T PPP1R12A Frame_Shift_Ins p.N540Kfs*2 0.46 TCGA-PK-A5HB-01 12 80658922 80658922 C T OTOGL Missense_Mutation p.A710V 0.41 deleterious(0) possibly_damaging(0.869) TCGA-PK-A5HB-01 12 80665446 80665446 G A OTOGL Missense_Mutation p.G837E 0.45 deleterious(0) probably_damaging(0.984) TCGA-PK-A5HB-01 12 82780603 82780603 T C METTL25 Missense_Mutation p.I94T 0.37 deleterious(0.01) benign(0.103) TCGA-PK-A5HB-01 12 8926136 8926136 T C RIMKLB Missense_Mutation p.L306P 0.78 deleterious(0) possibly_damaging(0.836) TCGA-PK-A5HB-01 12 93793069 93793069 A T NUDT4 Missense_Mutation p.N154Y 0.11 deleterious(0.01) benign(0.012) TCGA-PK-A5HB-01 12 94725525 94725525 T C CCDC41 Missense_Mutation p.Y553C 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-PK-A5HB-01 12 99061321 99061321 C T APAF1 Nonsense_Mutation p.Q465* 0.51 TCGA-PK-A5HB-01 13 103288650 103288650 A G TPP2 Missense_Mutation p.N529S 0.81 tolerated(0.47) benign(0.002) TCGA-PK-A5HB-01 13 115030673 115030673 C T CDC16 Missense_Mutation p.H521Y 0.80 tolerated(0.9) benign(0.001) TCGA-PK-A5HB-01 13 28883025 28883025 G A FLT1 Silent p.I1225I 0.73 TCGA-PK-A5HB-01 13 33338706 33338706 A C PDS5B Missense_Mutation p.K1200Q 0.78 tolerated_low_confidence(0.14) benign(0.387) TCGA-PK-A5HB-01 13 39262894 39262894 C T FREM2 Silent p.S471S 0.90 TCGA-PK-A5HB-01 13 46357696 46357696 C T SIAH3 Missense_Mutation p.R211H 0.80 deleterious(0) possibly_damaging(0.842) TCGA-PK-A5HB-01 13 49796459 49796459 A T MLNR Silent p.G395G 0.87 TCGA-PK-A5HB-01 13 50489152 50489152 A T SPRYD7 3'UTR 0.79 TCGA-PK-A5HB-01 13 77780870 77780870 A G MYCBP2 Silent p.C1131C 0.75 TCGA-PK-A5HB-01 13 79894684 79894684 T A RBM26 3'UTR 1.00 TCGA-PK-A5HB-01 13 99083455 99083455 G A FARP1 Silent p.R688R 0.72 TCGA-PK-A5HB-01 13 99100570 99100570 G C FARP1 Nonstop_Mutation p.*1046Sext*22 0.77 TCGA-PK-A5HB-01 14 100793571 100793571 C T SLC25A47 Missense_Mutation p.S64F 0.32 deleterious(0) probably_damaging(0.972) TCGA-PK-A5HB-01 14 102476260 102476260 C T DYNC1H1 Missense_Mutation p.P2020S 0.45 probably_damaging(0.998) TCGA-PK-A5HB-01 14 102516785 102516785 T A DYNC1H1 Missense_Mutation p.V4609D 0.47 probably_damaging(0.988) TCGA-PK-A5HB-01 14 102807679 102807680 TG - ZNF839 Frame_Shift_Del p.V650Dfs*7 0.27 TCGA-PK-A5HB-01 14 102816363 102816363 T A CINP Missense_Mutation p.E125V 0.49 tolerated(0.06) probably_damaging(0.989) TCGA-PK-A5HB-01 14 102931570 102931570 C T TECPR2 Missense_Mutation p.P1245S 0.46 deleterious(0) possibly_damaging(0.855) TCGA-PK-A5HB-01 14 103999082 103999082 C T TRMT61A Silent p.C165C 0.50 TCGA-PK-A5HB-01 14 104206356 104206356 G A PPP1R13B Silent p.P799P 0.32 TCGA-PK-A5HB-01 14 105172438 105172438 G - INF2 Frame_Shift_Del p.E257Rfs*12 0.33 TCGA-PK-A5HB-01 14 105350368 105350368 C T CEP170B Missense_Mutation p.R418C 0.39 deleterious(0) probably_damaging(0.988) TCGA-PK-A5HB-01 14 105352726 105352726 G A CEP170B Missense_Mutation p.S717N 0.40 tolerated(0.46) benign(0.133) TCGA-PK-A5HB-01 14 105404886 105404886 T G AHNAK2 Missense_Mutation p.K5634N 0.05 benign(0.373) TCGA-PK-A5HB-01 14 105416057 105416057 T C AHNAK2 Missense_Mutation p.M1911V 0.44 benign(0.015) TCGA-PK-A5HB-01 14 105995324 105995324 C T TMEM121 Silent p.C51C 0.42 TCGA-PK-A5HB-01 14 106066268 106066268 A T IGHE 3'Flank 0.42 TCGA-PK-A5HB-01 14 106539175 106539175 G A IGHV1-8 Silent p.G85G 0.84 TCGA-PK-A5HB-01 14 19573146 19573146 T C POTEG Splice_Site p.X414_splice 0.14 TCGA-PK-A5HB-01 14 20345046 20345046 C T OR4K2 Missense_Mutation p.A207V 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-PK-A5HB-01 14 20444355 20444355 T A OR4K15 Missense_Mutation p.D226E 0.47 deleterious(0.02) possibly_damaging(0.491) TCGA-PK-A5HB-01 14 20666484 20666484 T C OR11G2 Silent p.L330L 0.50 TCGA-PK-A5HB-01 14 20924074 20924074 G A APEX1 Silent p.E20E 0.43 TCGA-PK-A5HB-01 14 21109455 21109455 C T OR6S1 Silent p.L132L 0.43 TCGA-PK-A5HB-01 14 21623596 21623597 - A OR5AU1 Frame_Shift_Ins p.V197Cfs*20 0.29 TCGA-PK-A5HB-01 14 23415765 23415765 G A HAUS4 Missense_Mutation p.A354V 0.44 tolerated(0.22) benign(0.021) TCGA-PK-A5HB-01 14 23504062 23504062 G A PSMB5 Missense_Mutation p.P10L 0.54 tolerated(0.31) benign(0.001) TCGA-PK-A5HB-01 14 23777326 23777326 C T BCL2L2-PABPN1 Missense_Mutation p.P117L 0.40 tolerated_low_confidence(0.05) possibly_damaging(0.623) TCGA-PK-A5HB-01 14 23821014 23821014 G A SLC22A17 Silent p.L106L 0.40 TCGA-PK-A5HB-01 14 23844931 23844931 C T IL25 Missense_Mutation p.P126S 0.43 tolerated(0.28) benign(0.091) TCGA-PK-A5HB-01 14 23865566 23865566 T C MYH6 Missense_Mutation p.I786V 0.48 tolerated(0.31) benign(0.05) TCGA-PK-A5HB-01 14 23872558 23872558 C G MYH6 Silent p.L299L 0.43 TCGA-PK-A5HB-01 14 23894924 23894924 A T MYH7 Missense_Mutation p.Y756N 0.38 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 14 23947277 23947277 T A NGDN 3'UTR 0.35 TCGA-PK-A5HB-01 14 24718579 24718579 G A TGM1 Silent p.D798D 0.52 TCGA-PK-A5HB-01 14 24801000 24801000 C T ADCY4 Silent p.K221K 0.37 TCGA-PK-A5HB-01 14 35585883 35585883 G C PPP2R3C Missense_Mutation p.S40C 0.19 tolerated(0.11) benign(0.003) TCGA-PK-A5HB-01 14 37135761 37135761 C T PAX9 Silent p.N242N 0.41 TCGA-PK-A5HB-01 14 39639374 39639374 G A TRAPPC6B 5'UTR 0.37 TCGA-PK-A5HB-01 14 45644600 45644600 C T FANCM Silent p.D881D 0.32 TCGA-PK-A5HB-01 14 45654431 45654431 G A FANCM Silent p.R1509R 0.41 TCGA-PK-A5HB-01 14 52182163 52182163 T C FRMD6 Missense_Mutation p.Y324H 0.47 tolerated(0.53) probably_damaging(0.938) TCGA-PK-A5HB-01 14 56103915 56103915 G A KTN1 Splice_Site p.X517_splice 0.37 TCGA-PK-A5HB-01 14 60978044 60978044 G A SIX6 3'UTR 0.38 TCGA-PK-A5HB-01 14 64194307 64194307 T C SGPP1 Missense_Mutation p.Q119R 0.48 deleterious(0.03) benign(0.007) TCGA-PK-A5HB-01 14 64644145 64644145 G A SYNE2 Missense_Mutation p.E5834K 0.45 benign(0.002) TCGA-PK-A5HB-01 14 65009141 65009141 C T HSPA2 Missense_Mutation p.A525V 0.43 deleterious_low_confidence(0.01) benign(0.081) TCGA-PK-A5HB-01 14 65249147 65249147 G T SPTB Nonsense_Mutation p.S1376* 0.52 TCGA-PK-A5HB-01 14 65263322 65263322 C T SPTB Missense_Mutation p.A432T 0.45 tolerated(0.15) possibly_damaging(0.872) TCGA-PK-A5HB-01 14 67768822 67768822 G A MPP5 Missense_Mutation p.R263H 0.45 tolerated(0.07) possibly_damaging(0.892) TCGA-PK-A5HB-01 14 70926261 70926261 T - ADAM21 Frame_Shift_Del p.L684Cfs*3 0.24 TCGA-PK-A5HB-01 14 71492916 71492916 G A PCNX Missense_Mutation p.S1089N 0.36 deleterious(0.03) probably_damaging(0.978) TCGA-PK-A5HB-01 14 74061813 74061813 A C ACOT4 Missense_Mutation p.M241L 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-PK-A5HB-01 14 75643179 75643179 T C TMED10 Missense_Mutation p.H35R 0.33 tolerated(0.21) possibly_damaging(0.487) TCGA-PK-A5HB-01 14 78036740 78036740 G A SPTLC2 Missense_Mutation p.A248V 0.48 tolerated(0.05) benign(0.028) TCGA-PK-A5HB-01 14 80677760 80677760 A - DIO2 Frame_Shift_Del p.F19Sfs*23 0.15 TCGA-PK-A5HB-01 14 81557476 81557476 A T TSHR Silent p.I152I 0.52 TCGA-PK-A5HB-01 14 86089453 86089453 C T FLRT2 Missense_Mutation p.T532M 0.43 tolerated(0.1) possibly_damaging(0.608) TCGA-PK-A5HB-01 14 86090987 86090987 T A FLRT2 3'UTR 0.55 TCGA-PK-A5HB-01 14 89343833 89343833 A C TTC8 3'UTR 0.43 TCGA-PK-A5HB-01 14 90863501 90863502 - C CALM1 5'UTR 0.23 TCGA-PK-A5HB-01 14 91927933 91927933 T - SMEK1 Frame_Shift_Del p.K715Rfs*5 0.27 TCGA-PK-A5HB-01 14 92792243 92792243 C A SLC24A4 Silent p.V54V 0.43 TCGA-PK-A5HB-01 14 92909757 92909757 C T SLC24A4 Missense_Mutation p.T199M 0.43 deleterious(0) probably_damaging(0.979) TCGA-PK-A5HB-01 14 93277940 93277940 G A GOLGA5 Silent p.Q387Q 0.40 TCGA-PK-A5HB-01 14 93954014 93954014 T C UNC79 Missense_Mutation p.S32P 0.35 tolerated(0.2) possibly_damaging(0.576) TCGA-PK-A5HB-01 14 94772527 94772527 T C SERPINA6 Missense_Mutation p.T305A 0.54 deleterious(0.02) benign(0.001) TCGA-PK-A5HB-01 14 95088767 95088767 C T SERPINA3 Missense_Mutation p.A336V 0.42 tolerated(1) benign(0) TCGA-PK-A5HB-01 14 95932517 95932517 G A SYNE3 Silent p.Y126Y 0.47 TCGA-PK-A5HB-01 14 97027050 97027050 T C PAPOLA Splice_Site p.X689_splice 0.35 TCGA-PK-A5HB-01 14 99640941 99640941 C A BCL11B Silent p.S744S 0.38 TCGA-PK-A5HB-01 14 99641025 99641025 C T BCL11B Silent p.A716A 0.38 TCGA-PK-A5HB-01 14 99697775 99697775 G - BCL11B Frame_Shift_Del p.L183Cfs*98 0.28 TCGA-PK-A5HB-01 15 100514681 100514681 A T ADAMTS17 Missense_Mutation p.W1072R 0.46 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 15 100533255 100533255 T C ADAMTS17 Missense_Mutation p.T983A 0.49 deleterious(0.01) benign(0.033) TCGA-PK-A5HB-01 15 102192528 102192528 C T TM2D3 Missense_Mutation p.A13T 0.30 tolerated(0.57) benign(0.018) TCGA-PK-A5HB-01 15 102358817 102358817 A G OR4F15 Missense_Mutation p.Y143C 0.48 tolerated_low_confidence(0.06) benign(0.003) TCGA-PK-A5HB-01 15 102516484 102516484 C G WASH3P 3'Flank 0.09 TCGA-PK-A5HB-01 15 22369302 22369302 T C OR4M2 Missense_Mutation p.Y243H 0.14 deleterious(0.01) probably_damaging(0.949) TCGA-PK-A5HB-01 15 22956052 22956052 G A CYFIP1 Intron 0.43 TCGA-PK-A5HB-01 15 23326328 23326328 A G HERC2P2 RNA 0.39 TCGA-PK-A5HB-01 15 23931303 23931303 T C NDN 3'UTR 0.50 TCGA-PK-A5HB-01 15 24925691 24925691 T A NPAP1 3'UTR 0.38 TCGA-PK-A5HB-01 15 28377252 28377252 A G HERC2 Silent p.P4188P 0.44 TCGA-PK-A5HB-01 15 28408358 28408358 G A HERC2 Missense_Mutation p.A3543V 0.46 benign(0.003) TCGA-PK-A5HB-01 15 28443647 28443647 A G HERC2 Missense_Mutation p.Y2630H 0.44 benign(0.237) TCGA-PK-A5HB-01 15 28473416 28473416 A G HERC2 Silent p.L1804L 0.45 TCGA-PK-A5HB-01 15 28912415 28912415 G A HERC2P9 RNA 0.26 TCGA-PK-A5HB-01 15 29409295 29409295 T C APBA2 Missense_Mutation p.F737L 0.46 deleterious(0) benign(0.271) TCGA-PK-A5HB-01 15 30659681 30659681 C T CHRFAM7A Silent p.V220V 0.21 TCGA-PK-A5HB-01 15 31776311 31776311 T C OTUD7A Missense_Mutation p.Y656C 0.35 tolerated(0.08) possibly_damaging(0.832) TCGA-PK-A5HB-01 15 32446126 32446126 C T CHRNA7 Silent p.D152D 0.26 TCGA-PK-A5HB-01 15 40765086 40765086 C T CHST14 3'UTR 0.44 TCGA-PK-A5HB-01 15 40914476 40914476 A G CASC5 Missense_Mutation p.I698V 0.48 tolerated(0.38) benign(0.005) TCGA-PK-A5HB-01 15 41023392 41023393 CT - RAD51 3'UTR 0.31 TCGA-PK-A5HB-01 15 41059571 41059571 G - GCHFR 3'UTR 0.33 TCGA-PK-A5HB-01 15 41099436 41099436 T A ZFYVE19 5'UTR 0.47 TCGA-PK-A5HB-01 15 41195414 41195415 - AG VPS18 Frame_Shift_Ins p.A934Rfs*18 0.24 TCGA-PK-A5HB-01 15 42059314 42059314 C T MGA Missense_Mutation p.P3012S 0.44 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 15 42149686 42149686 G A SPTBN5 Missense_Mutation p.R2791C 0.51 benign(0.024) TCGA-PK-A5HB-01 15 42837435 42837435 G A LRRC57 Missense_Mutation p.S173F 0.49 deleterious(0) probably_damaging(0.926) TCGA-PK-A5HB-01 15 44093779 44093779 T C HYPK Intron 0.32 TCGA-PK-A5HB-01 15 44093895 44093896 - T HYPK Intron 0.30 TCGA-PK-A5HB-01 15 44918706 44918706 C T SPG11 Splice_Site p.X690_splice 0.48 TCGA-PK-A5HB-01 15 48054484 48054484 G A SEMA6D Missense_Mutation p.R209H 0.26 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 15 48413173 48413173 A G SLC24A5 5'UTR 0.32 TCGA-PK-A5HB-01 15 48764789 48764789 T C FBN1 Missense_Mutation p.D1432G 0.36 possibly_damaging(0.901) TCGA-PK-A5HB-01 15 48788314 48788314 T A FBN1 Missense_Mutation p.D801V 0.42 possibly_damaging(0.681) TCGA-PK-A5HB-01 15 49030435 49030435 C T CEP152 3'UTR 0.35 TCGA-PK-A5HB-01 15 49926737 49926737 C T DTWD1 Missense_Mutation p.A138V 0.37 tolerated(1) benign(0.006) TCGA-PK-A5HB-01 15 51014348 51014350 AAG - SPPL2A In_Frame_Del p.S433del 0.55 TCGA-PK-A5HB-01 15 51514616 51514616 G A CYP19A1 Silent p.D186D 0.52 TCGA-PK-A5HB-01 15 52879284 52879284 A T FAM214A Intron 0.43 TCGA-PK-A5HB-01 15 55790437 55790437 T C DYX1C1 Missense_Mutation p.T31A 0.44 tolerated(1) benign(0.001) TCGA-PK-A5HB-01 15 56032850 56032850 T A PRTG Nonsense_Mutation p.K43* 0.53 TCGA-PK-A5HB-01 15 56130803 56130803 C A NEDD4 Splice_Site p.X1025_splice 0.47 TCGA-PK-A5HB-01 15 60803784 60803785 TC - RORA Frame_Shift_Del p.D187Qfs*26 0.31 TCGA-PK-A5HB-01 15 63097938 63097938 C T TLN2 Missense_Mutation p.A2206V 0.49 deleterious(0) possibly_damaging(0.87) TCGA-PK-A5HB-01 15 63893575 63893575 C T FBXL22 Missense_Mutation p.S145L 0.53 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-PK-A5HB-01 15 63916523 63916523 T C HERC1 Missense_Mutation p.S4427G 0.37 benign(0.145) TCGA-PK-A5HB-01 15 65489585 65489585 C T CILP Missense_Mutation p.M1013I 0.43 deleterious(0.01) probably_damaging(0.943) TCGA-PK-A5HB-01 15 65489631 65489631 T G CILP Missense_Mutation p.Q998P 0.39 tolerated(0.25) possibly_damaging(0.791) TCGA-PK-A5HB-01 15 65917184 65917185 - C SLC24A1 Frame_Shift_Ins p.T258Nfs*6 0.25 TCGA-PK-A5HB-01 15 69331288 69331288 A G NOX5 Missense_Mutation p.E488G 0.50 deleterious(0.03) possibly_damaging(0.833) TCGA-PK-A5HB-01 15 73029922 73029922 G C BBS4 Missense_Mutation p.E518D 0.42 tolerated_low_confidence(0.08) benign(0.015) TCGA-PK-A5HB-01 15 74487774 74487774 C T STRA6 Missense_Mutation p.A195T 0.34 deleterious(0.02) possibly_damaging(0.853) TCGA-PK-A5HB-01 15 75498952 75498952 G A C15orf39 Missense_Mutation p.G188D 0.11 tolerated(0.07) benign(0.002) TCGA-PK-A5HB-01 15 75586567 75586567 C - GOLGA6D Frame_Shift_Del p.Q642Rfs*15 0.55 TCGA-PK-A5HB-01 15 75979767 75979767 G A CSPG4 Silent p.F1213F 0.46 TCGA-PK-A5HB-01 15 78838004 78838004 G A PSMA4 Silent p.L135L 0.45 TCGA-PK-A5HB-01 15 80215735 80215735 C T C15ORF37 Missense_Mutation p.L73F 0.47 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-PK-A5HB-01 15 81660598 81660598 G A TMC3 Missense_Mutation p.A103V 0.39 deleterious(0.04) benign(0.053) TCGA-PK-A5HB-01 15 82512116 82512116 G T EFTUD1 Silent p.L496L 0.38 TCGA-PK-A5HB-01 15 83395260 83395260 G A AC105339.2 3'Flank 0.67 TCGA-PK-A5HB-01 15 85401392 85401392 G A ALPK3 Silent p.E1343E 0.41 TCGA-PK-A5HB-01 15 86810268 86810268 T C AGBL1 Missense_Mutation p.F554S 0.39 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 15 89864046 89864046 C T POLG Missense_Mutation p.A978T 0.35 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 15 90378789 90378789 G A C15orf38-AP3S2 Silent p.G381G 0.43 TCGA-PK-A5HB-01 15 91504901 91504901 C T RCCD1 Missense_Mutation p.R345C 0.47 deleterious(0.04) benign(0.063) TCGA-PK-A5HB-01 15 95013607 95013607 G T MCTP2 Missense_Mutation p.L802F 0.40 deleterious(0.04) benign(0.049) TCGA-PK-A5HB-01 15 98511297 98511297 T C ARRDC4 Silent p.S192S 0.26 TCGA-PK-A5HB-01 15 99250942 99250942 C T IGF1R Silent p.T82T 0.42 TCGA-PK-A5HB-01 16 11272519 11272519 C T CLEC16A Missense_Mutation p.A1045V 0.44 tolerated_low_confidence(0.18) benign(0.001) TCGA-PK-A5HB-01 16 15131997 15131997 A T NTAN1 Nonsense_Mutation p.L275* 0.32 TCGA-PK-A5HB-01 16 15725252 15725252 A G KIAA0430 Missense_Mutation p.V446A 0.44 deleterious(0) possibly_damaging(0.882) TCGA-PK-A5HB-01 16 16425710 16425710 G T NPIPA7 5'Flank 0.34 TCGA-PK-A5HB-01 16 1682360 1682360 G C CRAMP1L Missense_Mutation p.D230H 0.41 deleterious(0.01) probably_damaging(0.946) TCGA-PK-A5HB-01 16 1793368 1793368 C A MAPK8IP3 Missense_Mutation p.P212H 0.28 tolerated(0.06) possibly_damaging(0.908) TCGA-PK-A5HB-01 16 1814309 1814309 G T MAPK8IP3 Missense_Mutation p.C709F 0.44 deleterious(0) probably_damaging(0.993) TCGA-PK-A5HB-01 16 19051758 19051758 A C TMC7 Missense_Mutation p.T443P 0.44 deleterious(0.01) probably_damaging(0.967) TCGA-PK-A5HB-01 16 19883815 19883815 T C GPRC5B Missense_Mutation p.D118G 0.47 tolerated(0.12) probably_damaging(1) TCGA-PK-A5HB-01 16 2013252 2013252 T C RPS2 Silent p.S91S 0.37 TCGA-PK-A5HB-01 16 20376740 20376740 A T PDILT Splice_Site p.X413_splice 0.43 TCGA-PK-A5HB-01 16 20396090 20396090 T A PDILT Missense_Mutation p.I96F 0.36 deleterious(0) possibly_damaging(0.642) TCGA-PK-A5HB-01 16 2052607 2052607 C T ZNF598 Missense_Mutation p.D198N 0.36 probably_damaging(1) TCGA-PK-A5HB-01 16 2053060 2053060 C T ZNF598 Missense_Mutation p.D133N 0.32 probably_damaging(0.942) TCGA-PK-A5HB-01 16 20634742 20634742 A G ACSM1 3'UTR 0.50 TCGA-PK-A5HB-01 16 22135022 22135022 A - VWA3A Frame_Shift_Del p.R511Gfs*56 0.22 TCGA-PK-A5HB-01 16 23424846 23424846 T C COG7 Silent p.R444R 0.42 TCGA-PK-A5HB-01 16 23481455 23481455 C T GGA2 Silent p.R494R 0.40 TCGA-PK-A5HB-01 16 23555852 23555852 C T EARS2 Silent p.R156R 0.41 TCGA-PK-A5HB-01 16 23555917 23555917 C T EARS2 Missense_Mutation p.G135R 0.53 deleterious(0.05) possibly_damaging(0.638) TCGA-PK-A5HB-01 16 23706207 23706207 G A ERN2 Missense_Mutation p.P696S 0.50 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 16 2374440 2374440 G T ABCA3 Missense_Mutation p.P138T 0.48 tolerated(0.7) benign(0) TCGA-PK-A5HB-01 16 2487128 2487128 A T CCNF Splice_Site p.X116_splice 0.39 TCGA-PK-A5HB-01 16 2487231 2487231 T C CCNF Missense_Mutation p.W150R 0.40 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 16 2564109 2564109 C G ATP6V0C Missense_Mutation p.S2C 0.52 deleterious(0) benign(0.28) TCGA-PK-A5HB-01 16 2580891 2580891 C T CEMP1 Missense_Mutation p.A62T 0.45 tolerated_low_confidence(0.07) benign(0.017) TCGA-PK-A5HB-01 16 27460153 27460153 C G IL21R Missense_Mutation p.T389S 0.43 tolerated(0.7) benign(0.009) TCGA-PK-A5HB-01 16 27549248 27549248 C A GTF3C1 Missense_Mutation p.K203N 0.54 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 16 27761402 27761402 A G KIAA0556 Missense_Mutation p.T1041A 0.45 deleterious(0) probably_damaging(0.992) TCGA-PK-A5HB-01 16 2816678 2816678 T A SRRM2 Missense_Mutation p.I2050N 0.43 unknown(0) TCGA-PK-A5HB-01 16 28841942 28841942 G A ATXN2L Silent p.G347G 0.54 TCGA-PK-A5HB-01 16 28847874 28847874 G A ATXN2L Intron 0.54 TCGA-PK-A5HB-01 16 28848085 28848085 C T ATXN2L 3'UTR 0.49 TCGA-PK-A5HB-01 16 28913320 28913320 C T ATP2A1 Missense_Mutation p.A746V 0.40 deleterious(0) possibly_damaging(0.468) TCGA-PK-A5HB-01 16 28943679 28943679 C T CD19 Missense_Mutation p.A34V 0.54 tolerated(0.15) probably_damaging(0.971) TCGA-PK-A5HB-01 16 28946768 28946768 T C CD19 Missense_Mutation p.L280P 0.48 deleterious(0.01) probably_damaging(0.955) TCGA-PK-A5HB-01 16 29827951 29827951 T A PAGR1 Missense_Mutation p.D35E 0.42 tolerated(0.15) probably_damaging(0.998) TCGA-PK-A5HB-01 16 29994580 29994580 C T TAOK2 Missense_Mutation p.A396V 0.45 deleterious_low_confidence(0.01) benign(0.027) TCGA-PK-A5HB-01 16 29994973 29994973 A G TAOK2 Silent p.R470R 0.51 TCGA-PK-A5HB-01 16 30002102 30002102 C T TAOK2 3'Flank 0.39 TCGA-PK-A5HB-01 16 30002105 30002105 C A TAOK2 3'Flank 0.43 TCGA-PK-A5HB-01 16 30002194 30002194 C T TAOK2 3'Flank 0.41 TCGA-PK-A5HB-01 16 30002536 30002536 C T TAOK2 3'Flank 0.38 TCGA-PK-A5HB-01 16 30002651 30002651 C T TAOK2 3'Flank 0.44 TCGA-PK-A5HB-01 16 30369775 30369775 G A TBC1D10B Silent p.S639S 0.45 TCGA-PK-A5HB-01 16 30593815 30593815 C T ZNF785 3'UTR 0.28 TCGA-PK-A5HB-01 16 30593825 30593825 C A ZNF785 3'UTR 0.33 TCGA-PK-A5HB-01 16 30594019 30594019 C T ZNF785 Nonsense_Mutation p.W360* 0.38 TCGA-PK-A5HB-01 16 3063682 3063682 T C CLDN9 Missense_Mutation p.C107R 0.33 deleterious(0) probably_damaging(0.987) TCGA-PK-A5HB-01 16 3063792 3063792 C T CLDN9 Silent p.I143I 0.38 TCGA-PK-A5HB-01 16 30745920 30745920 C T SRCAP Missense_Mutation p.T2238I 0.43 probably_damaging(0.944) TCGA-PK-A5HB-01 16 30964661 30964661 C T ORAI3 Silent p.N128N 0.36 TCGA-PK-A5HB-01 16 30990658 30990658 C T SETD1A Missense_Mutation p.A1184V 0.48 unknown(0) TCGA-PK-A5HB-01 16 31072498 31072498 G C ZNF668 Missense_Mutation p.A607G 0.40 deleterious(0.05) possibly_damaging(0.879) TCGA-PK-A5HB-01 16 31371245 31371245 C T ITGAX Missense_Mutation p.S189F 0.47 deleterious(0) probably_damaging(0.945) TCGA-PK-A5HB-01 16 31471222 31471222 G T ARMC5 Missense_Mutation p.R126L 0.46 deleterious(0) unknown(0) TCGA-PK-A5HB-01 16 3545393 3545393 T C C16orf90 Missense_Mutation p.E10G 0.35 deleterious_low_confidence(0.01) benign(0.005) TCGA-PK-A5HB-01 16 4431929 4431929 G A VASN Missense_Mutation p.A351T 0.42 tolerated(1) benign(0.009) TCGA-PK-A5HB-01 16 47581450 47581450 T G PHKB Missense_Mutation p.L234R 0.45 deleterious(0) possibly_damaging(0.838) TCGA-PK-A5HB-01 16 50368679 50368679 T C BRD7 Missense_Mutation p.E277G 0.43 tolerated(0.22) benign(0.007) TCGA-PK-A5HB-01 16 57060004 57060004 G A NLRC5 Silent p.Q383Q 0.86 TCGA-PK-A5HB-01 16 57060099 57060099 G A NLRC5 Missense_Mutation p.C415Y 0.69 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 16 57089359 57089359 G A NLRC5 Missense_Mutation p.C1225Y 0.84 deleterious(0) possibly_damaging(0.688) TCGA-PK-A5HB-01 16 618994 618994 G - PIGQ 5'Flank 0.55 TCGA-PK-A5HB-01 16 66950187 66950187 T A CDH16 Missense_Mutation p.Y92F 0.80 deleterious(0) probably_damaging(0.973) TCGA-PK-A5HB-01 16 67980895 67980895 G A SLC12A4 Missense_Mutation p.S731F 0.79 deleterious(0) possibly_damaging(0.908) TCGA-PK-A5HB-01 16 70503129 70503129 C T FUK Silent p.P286P 0.78 TCGA-PK-A5HB-01 16 72822586 72822586 G - ZFHX3 Frame_Shift_Del p.Q3197Sfs*44 0.41 TCGA-PK-A5HB-01 16 74922199 74922199 C A WDR59 Silent p.R738R 0.44 TCGA-PK-A5HB-01 16 75200759 75200759 T G ZFP1 Missense_Mutation p.V36G 0.34 deleterious(0) probably_damaging(0.951) TCGA-PK-A5HB-01 16 81181855 81181855 G A PKD1L2 RNA 0.49 TCGA-PK-A5HB-01 16 840346 840346 G A CHTF18 Splice_Site p.X234_splice 0.39 TCGA-PK-A5HB-01 16 84271116 84271116 C T KCNG4 5'UTR 0.43 TCGA-PK-A5HB-01 16 86614990 86614990 T C FOXL1 3'UTR 0.46 TCGA-PK-A5HB-01 16 87445168 87445179 GTGACCAGTGGC TTGATTAGTGGA ZCCHC14 Missense_Mutation p.ATGH913STNQ 0.32 TCGA-PK-A5HB-01 16 88909119 88909119 G A GALNS Missense_Mutation p.S80L 0.53 deleterious(0) probably_damaging(0.99) TCGA-PK-A5HB-01 16 89653121 89653121 G A CPNE7 Missense_Mutation p.R350H 0.41 deleterious(0) probably_damaging(0.985) TCGA-PK-A5HB-01 16 90002412 90002412 G A TUBB3 3'UTR 0.56 TCGA-PK-A5HB-01 16 9004639 9004639 C G USP7 Missense_Mutation p.G375A 0.47 deleterious(0) probably_damaging(0.986) TCGA-PK-A5HB-01 16 9004658 9004658 C T USP7 Missense_Mutation p.A369T 0.41 tolerated(0.33) benign(0.059) TCGA-PK-A5HB-01 17 10213064 10213064 G A MYH13 Silent p.V1580V 0.73 TCGA-PK-A5HB-01 17 16336945 16336945 C T TRPV2 Missense_Mutation p.R683W 0.78 deleterious(0) possibly_damaging(0.88) TCGA-PK-A5HB-01 17 16703371 16703371 G C CCDC144A 3'UTR 0.78 TCGA-PK-A5HB-01 17 18022386 18022386 G A MYO15A Missense_Mutation p.R91H 0.79 probably_damaging(0.989) TCGA-PK-A5HB-01 17 18025311 18025311 C T MYO15A Missense_Mutation p.A1066V 0.66 unknown(0) TCGA-PK-A5HB-01 17 260403 260405 GAA - C17orf97 In_Frame_Del p.K93del 0.72 TCGA-PK-A5HB-01 17 26687565 26687565 G A TMEM199 Missense_Mutation p.G130D 0.86 tolerated(0.3) benign(0.243) TCGA-PK-A5HB-01 17 27041696 27041696 T C RAB34 Missense_Mutation p.T306A 0.81 tolerated(0.17) benign(0.012) TCGA-PK-A5HB-01 17 27282853 27282853 G A SEZ6 3'UTR 0.86 TCGA-PK-A5HB-01 17 29528059 29528059 T A NF1 Missense_Mutation p.L356Q 0.75 deleterious(0.04) possibly_damaging(0.621) TCGA-PK-A5HB-01 17 29662047 29662047 C T NF1 Nonsense_Mutation p.Q2002* 0.64 TCGA-PK-A5HB-01 17 30535210 30535210 T C RHOT1 Missense_Mutation p.S541P 0.71 tolerated(0.11) benign(0.011) TCGA-PK-A5HB-01 17 33289639 33289639 G A ZNF830 Missense_Mutation p.D352N 0.71 tolerated(0.12) probably_damaging(0.976) TCGA-PK-A5HB-01 17 33513335 33513335 G A UNC45B Silent p.E851E 0.77 TCGA-PK-A5HB-01 17 3518689 3518689 G A SHPK Silent p.N322N 0.79 TCGA-PK-A5HB-01 17 36912138 36912138 C T PSMB3 Missense_Mutation p.A64V 0.75 tolerated(0.49) benign(0.155) TCGA-PK-A5HB-01 17 38574153 38574153 G A TOP2A 5'UTR 0.81 TCGA-PK-A5HB-01 17 39190723 39190723 A G KRTAP1-3 Silent p.G117G 0.07 TCGA-PK-A5HB-01 17 39324164 39324164 G T KRTAP4-3 Silent p.S87S 0.67 TCGA-PK-A5HB-01 17 39411754 39411754 G A KRTAP9-9 Silent p.V39V 0.77 TCGA-PK-A5HB-01 17 40767023 40767023 G A TUBG1 Silent p.R440R 0.83 TCGA-PK-A5HB-01 17 42274975 42274975 T G ATXN7L3 Missense_Mutation p.K59Q 0.74 deleterious(0.05) possibly_damaging(0.661) TCGA-PK-A5HB-01 17 42337788 42337788 G A SLC4A1 Silent p.L157L 0.77 TCGA-PK-A5HB-01 17 43189811 43189811 C T PLCD3 3'UTR 0.88 TCGA-PK-A5HB-01 17 43214817 43214817 C G ACBD4 Missense_Mutation p.S166R 0.84 tolerated_low_confidence(0.12) benign(0.05) TCGA-PK-A5HB-01 17 56344750 56344750 G A LPO Silent p.P578P 0.83 TCGA-PK-A5HB-01 17 56388274 56388274 G A BZRAP1 Missense_Mutation p.P1128S 0.83 tolerated(0.14) benign(0.006) TCGA-PK-A5HB-01 17 56435785 56435785 C T RNF43 Missense_Mutation p.C451Y 0.74 tolerated(0.85) benign(0.058) TCGA-PK-A5HB-01 17 56774113 56774113 C T RAD51C Missense_Mutation p.A155V 0.74 tolerated(0.22) possibly_damaging(0.531) TCGA-PK-A5HB-01 17 59482964 59482964 G A TBX2 Missense_Mutation p.A485T 0.78 tolerated(0.6) benign(0.398) TCGA-PK-A5HB-01 17 685540 685540 C T GLOD4 5'UTR 0.80 TCGA-PK-A5HB-01 17 7311947 7311947 G A NLGN2 Missense_Mutation p.D125N 0.80 tolerated(0.42) probably_damaging(0.981) TCGA-PK-A5HB-01 17 7339882 7339882 G A TMEM102 Missense_Mutation p.S195N 0.07 tolerated_low_confidence(0.16) benign(0.036) TCGA-PK-A5HB-01 17 73839590 73839590 G A UNC13D Missense_Mutation p.P43L 0.81 tolerated(0.05) benign(0.075) TCGA-PK-A5HB-01 17 74387281 74387281 G T UBE2O Missense_Mutation p.L1208M 0.84 tolerated_low_confidence(0.13) benign(0.135) TCGA-PK-A5HB-01 17 7577018 7577018 C A TP53 Splice_Site p.X307_splice 0.87 TCGA-PK-A5HB-01 17 76455088 76455088 T A DNAH17 Missense_Mutation p.I3272F 0.80 possibly_damaging(0.459) TCGA-PK-A5HB-01 17 77043989 77043989 T C C1QTNF1 Missense_Mutation p.F222S 0.80 deleterious(0) benign(0.266) TCGA-PK-A5HB-01 17 7919549 7919549 G C GUCY2D Missense_Mutation p.W1055C 0.67 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 17 79827660 79827660 T C ARHGDIA Silent p.R49R 0.95 TCGA-PK-A5HB-01 17 8013790 8013790 G T ALOXE3 Nonsense_Mutation p.C470* 0.78 TCGA-PK-A5HB-01 17 8017851 8017851 G A ALOXE3 Nonsense_Mutation p.R343* 0.76 TCGA-PK-A5HB-01 17 8017917 8017917 G A ALOXE3 Missense_Mutation p.R321W 0.74 deleterious(0.01) possibly_damaging(0.855) TCGA-PK-A5HB-01 17 8783988 8783988 G A PIK3R5 Missense_Mutation p.P871S 0.80 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 18 13059087 13059087 C T CEP192 Missense_Mutation p.L1422F 0.05 tolerated(0.15) benign(0.188) TCGA-PK-A5HB-01 18 21739840 21739840 A G CABYR Missense_Mutation p.N316D 0.73 tolerated(0.19) benign(0.058) TCGA-PK-A5HB-01 18 29264442 29264442 C A B4GALT6 5'UTR 0.64 TCGA-PK-A5HB-01 18 29522753 29522753 C G TRAPPC8 5'UTR 0.79 TCGA-PK-A5HB-01 18 47429038 47429038 C T MYO5B Missense_Mutation p.A913T 0.74 deleterious(0.03) probably_damaging(0.973) TCGA-PK-A5HB-01 18 54293682 54293682 C - TXNL1 Frame_Shift_Del p.P36Hfs*3 0.41 TCGA-PK-A5HB-01 19 10394800 10394800 C T ICAM1 Silent p.F243F 0.45 TCGA-PK-A5HB-01 19 10394801 10394801 C T ICAM1 Missense_Mutation p.P244S 0.44 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 19 10439472 10439472 C T RAVER1 Missense_Mutation p.R218H 0.39 tolerated(0.06) probably_damaging(1) TCGA-PK-A5HB-01 19 10578111 10578111 G A PDE4A Silent p.R825R 0.34 TCGA-PK-A5HB-01 19 10657607 10657607 C T ATG4D Missense_Mutation p.P196S 0.46 tolerated(0.18) benign(0.055) TCGA-PK-A5HB-01 19 11097117 11097117 C T SMARCA4 Missense_Mutation p.A203V 0.38 probably_damaging(0.984) TCGA-PK-A5HB-01 19 11326127 11326127 G T DOCK6 Missense_Mutation p.P1348T 0.44 tolerated(0.69) benign(0) TCGA-PK-A5HB-01 19 11797189 11797189 C T ZNF833P RNA 0.40 TCGA-PK-A5HB-01 19 11892031 11892031 A G ZNF441 Silent p.V464V 0.36 TCGA-PK-A5HB-01 19 11917409 11917409 C T ZNF491 Missense_Mutation p.P214L 0.26 deleterious(0.02) possibly_damaging(0.901) TCGA-PK-A5HB-01 19 12060900 12060900 T A ZNF700 Silent p.S687S 0.52 TCGA-PK-A5HB-01 19 12155177 12155177 C T ZNF878 Missense_Mutation p.A347T 0.62 tolerated(0.18) benign(0.285) TCGA-PK-A5HB-01 19 12386792 12386792 T C ZNF44 Missense_Mutation p.I85V 0.42 tolerated(0.05) probably_damaging(0.986) TCGA-PK-A5HB-01 19 12430322 12430322 C T ZNF563 Missense_Mutation p.E173K 0.34 tolerated(0.11) possibly_damaging(0.738) TCGA-PK-A5HB-01 19 12637692 12637692 T A ZNF564 Silent p.I410I 0.43 TCGA-PK-A5HB-01 19 12768936 12768936 G T MAN2B1 Missense_Mutation p.A417E 0.48 deleterious(0) possibly_damaging(0.891) TCGA-PK-A5HB-01 19 13216335 13216335 C T TRMT1 Missense_Mutation p.A557T 0.37 tolerated(0.08) benign(0.146) TCGA-PK-A5HB-01 19 14074020 14074020 G A RFX1 Silent p.L880L 0.30 TCGA-PK-A5HB-01 19 14261780 14261780 G A LPHN1 Missense_Mutation p.R1444W 0.46 deleterious(0.01) probably_damaging(0.967) TCGA-PK-A5HB-01 19 14865828 14865828 T C EMR2 Missense_Mutation p.T510A 0.42 deleterious(0.02) probably_damaging(0.991) TCGA-PK-A5HB-01 19 14991440 14991440 G A OR7A17 Missense_Mutation p.S243L 0.37 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-PK-A5HB-01 19 15535673 15535673 C T WIZ Missense_Mutation p.A594T 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-PK-A5HB-01 19 15733941 15733941 T C CYP4F8 RNA 0.42 TCGA-PK-A5HB-01 19 15794437 15794437 G C CYP4F12 Missense_Mutation p.R261P 0.44 deleterious(0.03) possibly_damaging(0.841) TCGA-PK-A5HB-01 19 17170457 17170457 T A HAUS8 Missense_Mutation p.K110N 0.45 deleterious(0) probably_damaging(0.954) TCGA-PK-A5HB-01 19 17317488 17317488 A T MYO9B Missense_Mutation p.E1796V 0.42 deleterious(0.02) probably_damaging(1) TCGA-PK-A5HB-01 19 17953936 17953936 G A JAK3 Missense_Mutation p.L156F 0.42 tolerated(0.7) benign(0.433) TCGA-PK-A5HB-01 19 18331093 18331093 A T PDE4C Missense_Mutation p.S249T 0.37 deleterious(0.02) possibly_damaging(0.785) TCGA-PK-A5HB-01 19 19115190 19115190 C A SUGP2 Missense_Mutation p.A906S 0.44 tolerated(0.33) benign(0.05) TCGA-PK-A5HB-01 19 19337773 19337773 G A NCAN Silent p.V517V 0.49 TCGA-PK-A5HB-01 19 19338131 19338131 C - NCAN Frame_Shift_Del p.P569Lfs*19 0.26 TCGA-PK-A5HB-01 19 19744710 19744710 C T GMIP Missense_Mutation p.D792N 0.51 tolerated(0.49) benign(0.021) TCGA-PK-A5HB-01 19 19748233 19748233 C G GMIP Missense_Mutation p.E355D 0.38 tolerated(0.19) benign(0.002) TCGA-PK-A5HB-01 19 20307780 20307780 T C ZNF486 Silent p.C87C 0.43 TCGA-PK-A5HB-01 19 2763724 2763724 C T SGTA Missense_Mutation p.A142T 0.42 tolerated(0.67) benign(0.002) TCGA-PK-A5HB-01 19 288051 288051 G T PPAP2C Missense_Mutation p.A79D 0.33 tolerated(0.08) probably_damaging(0.962) TCGA-PK-A5HB-01 19 33168744 33168744 A G RGS9BP 3'UTR 0.36 TCGA-PK-A5HB-01 19 33168762 33168762 C T RGS9BP 3'UTR 0.33 TCGA-PK-A5HB-01 19 34687595 34687595 C T LSM14A Silent p.F114F 0.37 TCGA-PK-A5HB-01 19 34941214 34941214 A G UBA2 Silent p.L272L 0.43 TCGA-PK-A5HB-01 19 35085231 35085231 G A SCGB2B2 Missense_Mutation p.A32V 0.46 tolerated_low_confidence(0.07) benign(0.004) TCGA-PK-A5HB-01 19 35625482 35625482 T A LGI4 Nonsense_Mutation p.K35* 0.45 TCGA-PK-A5HB-01 19 35941567 35941567 T C FFAR2 Silent p.G317G 0.46 TCGA-PK-A5HB-01 19 36210835 36210837 CTT - KMT2B In_Frame_Del p.L197del 0.38 TCGA-PK-A5HB-01 19 36223774 36223774 C A KMT2B Missense_Mutation p.D2108E 0.40 probably_damaging(0.935) TCGA-PK-A5HB-01 19 36574056 36574056 C G WDR62 Missense_Mutation p.P488R 0.51 tolerated(0.18) possibly_damaging(0.805) TCGA-PK-A5HB-01 19 36643303 36643303 C T COX7A1 Missense_Mutation p.A3T 0.44 deleterious(0.01) benign(0.154) TCGA-PK-A5HB-01 19 37210811 37210811 T C ZNF567 Silent p.C364C 0.58 TCGA-PK-A5HB-01 19 38023351 38023351 A G ZNF793 Missense_Mutation p.M37V 0.34 deleterious(0) probably_damaging(0.977) TCGA-PK-A5HB-01 19 38590772 38590772 G A SIPA1L3 Silent p.L612L 0.46 TCGA-PK-A5HB-01 19 38875168 38875168 G A GGN Silent p.L615L 0.49 TCGA-PK-A5HB-01 19 39070652 39070652 A C RYR1 Missense_Mutation p.M4799L 0.34 benign(0.126) TCGA-PK-A5HB-01 19 39262626 39262626 G A LGALS7 Missense_Mutation p.A47V 0.51 tolerated(0.48) benign(0.054) TCGA-PK-A5HB-01 19 39262667 39262667 G T LGALS7 Missense_Mutation p.F33L 0.66 deleterious(0.01) probably_damaging(0.978) TCGA-PK-A5HB-01 19 39591616 39591616 C T PAPL Missense_Mutation p.P279S 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-PK-A5HB-01 19 3979353 3979353 C T EEF2 Missense_Mutation p.E563K 0.47 tolerated(0.11) possibly_damaging(0.725) TCGA-PK-A5HB-01 19 39926576 39926576 G A RPS16 5'UTR 0.39 TCGA-PK-A5HB-01 19 41758838 41758838 T C AXL Missense_Mutation p.F631S 0.42 deleterious(0) possibly_damaging(0.891) TCGA-PK-A5HB-01 19 42224956 42224956 T C CEACAM5 Missense_Mutation p.I629T 0.48 deleterious(0) possibly_damaging(0.819) TCGA-PK-A5HB-01 19 42585632 42585632 C - ZNF574 3'UTR 0.35 TCGA-PK-A5HB-01 19 42806518 42806518 A T PAFAH1B3 Intron 0.54 TCGA-PK-A5HB-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.36 TCGA-PK-A5HB-01 19 42861562 42861562 C A MEGF8 Missense_Mutation p.Q1546K 0.43 tolerated(0.86) benign(0.004) TCGA-PK-A5HB-01 19 43411912 43411912 G T PSG6 Missense_Mutation p.N267K 0.32 tolerated(0.12) possibly_damaging(0.593) TCGA-PK-A5HB-01 19 43439806 43439806 C A PSG7 Missense_Mutation p.Q60H 0.48 deleterious(0.01) benign(0.006) TCGA-PK-A5HB-01 19 44096194 44096194 G - IRGQ Frame_Shift_Del p.P619Lfs*17 0.34 TCGA-PK-A5HB-01 19 44097165 44097165 C T L34079.2 Missense_Mutation p.R9H 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-PK-A5HB-01 19 44223111 44223111 A G IRGC Missense_Mutation p.Y134C 0.44 deleterious(0.02) benign(0.409) TCGA-PK-A5HB-01 19 4423813 4423813 C T CHAF1A Missense_Mutation p.A440V 0.29 deleterious(0) unknown(0) TCGA-PK-A5HB-01 19 44501240 44501240 A G ZNF155 Missense_Mutation p.T422A 0.46 tolerated(0.09) possibly_damaging(0.624) TCGA-PK-A5HB-01 19 44739706 44739706 A G ZNF227 Missense_Mutation p.T375A 0.08 deleterious(0.03) benign(0.233) TCGA-PK-A5HB-01 19 45851316 45851316 C T KLC3 Missense_Mutation p.A226V 0.49 deleterious(0) probably_damaging(0.983) TCGA-PK-A5HB-01 19 45924593 45924593 G A ERCC1 Missense_Mutation p.A55V 0.43 tolerated(0.22) benign(0.003) TCGA-PK-A5HB-01 19 46024603 46024603 G A VASP Missense_Mutation p.A123T 0.55 tolerated(0.65) unknown(0) TCGA-PK-A5HB-01 19 474730 474730 G A ODF3L2 Silent p.C6C 0.24 TCGA-PK-A5HB-01 19 47572589 47572589 G A ZC3H4 Missense_Mutation p.H720Y 0.36 unknown(0) TCGA-PK-A5HB-01 19 47876940 47876940 C T DHX34 Missense_Mutation p.L683F 0.31 deleterious(0) probably_damaging(0.946) TCGA-PK-A5HB-01 19 48734920 48734920 T A CARD8 Missense_Mutation p.Y180F 0.44 deleterious(0.01) benign(0.134) TCGA-PK-A5HB-01 19 48734921 48734921 A T CARD8 Missense_Mutation p.Y180N 0.44 deleterious(0) probably_damaging(0.961) TCGA-PK-A5HB-01 19 48894556 48894556 C T KDELR1 Silent p.L20L 0.49 TCGA-PK-A5HB-01 19 49261316 49261316 G A FGF21 Missense_Mutation p.A157T 0.38 tolerated(0.22) benign(0.027) TCGA-PK-A5HB-01 19 4930840 4930840 C T MIR4747 5'Flank 0.48 TCGA-PK-A5HB-01 19 49507564 49507564 G A RUVBL2 Missense_Mutation p.A52T 0.51 deleterious(0) possibly_damaging(0.885) TCGA-PK-A5HB-01 19 50017380 50017380 G - FCGRT Frame_Shift_Del p.G107Efs*29 0.30 TCGA-PK-A5HB-01 19 50100497 50100497 G A PRR12 Missense_Mutation p.E969K 0.40 possibly_damaging(0.679) TCGA-PK-A5HB-01 19 50245268 50245268 C T TSKS Silent p.S457S 0.45 TCGA-PK-A5HB-01 19 50393311 50393311 G A IL4I1 Silent p.V462V 0.45 TCGA-PK-A5HB-01 19 50498494 50498494 C T VRK3 Missense_Mutation p.A240T 0.42 deleterious(0.01) probably_damaging(0.976) TCGA-PK-A5HB-01 19 50813133 50813133 G A MYH14 3'UTR 0.46 TCGA-PK-A5HB-01 19 51015773 51015773 G A ASPDH Missense_Mutation p.A166V 0.38 tolerated(0.37) benign(0.002) TCGA-PK-A5HB-01 19 51630290 51630290 C T SIGLEC9 Missense_Mutation p.S251F 0.33 tolerated(0.7) possibly_damaging(0.836) TCGA-PK-A5HB-01 19 52003397 52003397 G A SIGLEC12 Silent p.A195A 0.38 TCGA-PK-A5HB-01 19 52327406 52327406 C T FPR3 Silent p.N135N 0.36 TCGA-PK-A5HB-01 19 53612773 53612773 A T ZNF415 Silent p.V175V 0.38 TCGA-PK-A5HB-01 19 54080878 54080878 A G ZNF331 Missense_Mutation p.Y355C 0.43 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 19 54445384 54445384 G A CACNG7 Missense_Mutation p.S222N 0.43 deleterious(0) probably_damaging(0.964) TCGA-PK-A5HB-01 19 54617860 54617860 A G TFPT Missense_Mutation p.Y82H 0.45 deleterious(0.05) benign(0.026) TCGA-PK-A5HB-01 19 54972715 54972715 G A LENG8 3'UTR 0.32 TCGA-PK-A5HB-01 19 55494293 55494293 G A NLRP2 Silent p.K409K 0.42 TCGA-PK-A5HB-01 19 55598758 55598758 G T EPS8L1 Silent p.G680G 0.47 TCGA-PK-A5HB-01 19 55667611 55667611 G A TNNI3 Silent p.C80C 0.55 TCGA-PK-A5HB-01 19 55742232 55742232 G A PPP6R1 Missense_Mutation p.T827I 0.44 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-PK-A5HB-01 19 56473553 56473553 G C NLRP8 Missense_Mutation p.K721N 0.52 tolerated(0.15) benign(0.028) TCGA-PK-A5HB-01 19 5690351 5690351 C T RPL36 Intron 0.59 TCGA-PK-A5HB-01 19 57999254 57999254 G A ZNF419 5'UTR 0.47 TCGA-PK-A5HB-01 19 58258339 58258339 C T ZNF776 5'UTR 0.41 TCGA-PK-A5HB-01 19 5831650 5831650 T C FUT6 Missense_Mutation p.K310R 0.29 tolerated(0.31) benign(0.044) TCGA-PK-A5HB-01 19 58967729 58967729 G A ZNF324B Missense_Mutation p.R473H 0.47 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 19 59073424 59073424 G A MZF1 3'UTR 0.47 TCGA-PK-A5HB-01 19 6213091 6213091 G A MLLT1 Missense_Mutation p.R548C 0.50 deleterious(0) possibly_damaging(0.689) TCGA-PK-A5HB-01 19 6361605 6361606 - A CLPP Frame_Shift_Ins p.G8Rfs*67 0.53 TCGA-PK-A5HB-01 19 6731283 6731283 T C GPR108 Missense_Mutation p.Y454C 0.40 deleterious(0) probably_damaging(0.99) TCGA-PK-A5HB-01 19 7622153 7622153 A G PNPLA6 Missense_Mutation p.Y1137C 0.38 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 19 7975940 7975940 C T MAP2K7 Silent p.L251L 0.34 TCGA-PK-A5HB-01 19 8138131 8138131 G A FBN3 Missense_Mutation p.R2585C 0.46 tolerated(0.1) possibly_damaging(0.67) TCGA-PK-A5HB-01 19 8436389 8436389 G A ANGPTL4 Missense_Mutation p.C341Y 0.44 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 19 8531219 8531219 G A HNRNPM Missense_Mutation p.R244H 0.37 deleterious(0.04) benign(0.216) TCGA-PK-A5HB-01 19 8563981 8563981 A G PRAM1 Silent p.P237P 0.35 TCGA-PK-A5HB-01 19 8645784 8645784 C T ADAMTS10 Missense_Mutation p.G1102D 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-PK-A5HB-01 19 9019621 9019621 T C MUC16 Missense_Mutation p.T12509A 0.43 benign(0.19) TCGA-PK-A5HB-01 19 9084962 9084962 T C MUC16 Missense_Mutation p.T2285A 0.38 unknown(0) TCGA-PK-A5HB-01 19 9204539 9204539 A T OR1M1 Missense_Mutation p.I207L 0.52 tolerated(0.63) benign(0.058) TCGA-PK-A5HB-01 19 9271917 9271917 C T ZNF317 Silent p.C532C 0.43 TCGA-PK-A5HB-01 19 9453476 9453476 C T ZNF559 Missense_Mutation p.S450L 0.42 deleterious(0) benign(0.008) TCGA-PK-A5HB-01 19 9639084 9639084 G A ZNF426 Missense_Mutation p.S546L 0.50 tolerated(0.66) benign(0.222) TCGA-PK-A5HB-01 19 985942 985942 G A WDR18 Silent p.L96L 0.45 TCGA-PK-A5HB-01 1 100527406 100527406 T C HIAT1 Silent p.V129V 0.37 TCGA-PK-A5HB-01 1 100586978 100586978 C T SASS6 Missense_Mutation p.V147M 0.46 tolerated(0.14) benign(0.016) TCGA-PK-A5HB-01 1 10190785 10190785 G A UBE4B Missense_Mutation p.E609K 0.38 deleterious(0.05) benign(0.42) TCGA-PK-A5HB-01 1 10364624 10364624 T C KIF1B Intron 0.47 TCGA-PK-A5HB-01 1 10699787 10699787 A T CASZ1 Missense_Mutation p.S1498T 0.39 tolerated(0.63) benign(0.108) TCGA-PK-A5HB-01 1 108298065 108298065 A C VAV3 Missense_Mutation p.L386R 0.26 tolerated(0.68) benign(0) TCGA-PK-A5HB-01 1 109197353 109197353 A G HENMT1 Missense_Mutation p.I128T 0.46 tolerated(0.05) possibly_damaging(0.619) TCGA-PK-A5HB-01 1 109740206 109740206 C - KIAA1324 Frame_Shift_Del p.P746Qfs*3 0.35 TCGA-PK-A5HB-01 1 109793092 109793092 C G CELSR2 Missense_Mutation p.L131V 0.45 deleterious_low_confidence(0.04) benign(0.024) TCGA-PK-A5HB-01 1 110085867 110085867 A G GPR61 Missense_Mutation p.K75E 0.07 deleterious(0) probably_damaging(0.98) TCGA-PK-A5HB-01 1 110148988 110148988 T C GNAT2 Missense_Mutation p.R178G 0.37 deleterious(0) probably_damaging(0.96) TCGA-PK-A5HB-01 1 110564309 110564309 A G AHCYL1 3'UTR 0.50 TCGA-PK-A5HB-01 1 110607490 110607490 G - ALX3 Frame_Shift_Del p.Q105Sfs*88 0.31 TCGA-PK-A5HB-01 1 111144784 111144784 T C KCNA2 3'UTR 0.48 TCGA-PK-A5HB-01 1 11115019 11115019 C A SRM Missense_Mutation p.K296N 0.75 tolerated(0.09) benign(0.095) TCGA-PK-A5HB-01 1 111890299 111890299 T A PIFO Missense_Mutation p.Y55N 0.42 tolerated(0.39) benign(0.013) TCGA-PK-A5HB-01 1 113666622 113666622 C T LRIG2 Missense_Mutation p.P1033S 0.36 tolerated_low_confidence(0.18) benign(0.021) TCGA-PK-A5HB-01 1 114189207 114189207 C G MAGI3 Missense_Mutation p.P700A 0.43 deleterious(0.04) probably_damaging(0.994) TCGA-PK-A5HB-01 1 114506014 114506014 C T HIPK1 Silent p.S703S 0.39 TCGA-PK-A5HB-01 1 1153176 1153176 G A SDF4 Intron 0.50 TCGA-PK-A5HB-01 1 119683258 119683258 G A WARS2 Missense_Mutation p.H4Y 0.41 tolerated_low_confidence(1) benign(0) TCGA-PK-A5HB-01 1 11982929 11982929 T C KIAA2013 Missense_Mutation p.I551V 0.37 tolerated(0.18) possibly_damaging(0.487) TCGA-PK-A5HB-01 1 1221031 1221031 G A SCNN1D Missense_Mutation p.C182Y 0.42 deleterious(0.03) benign(0.067) TCGA-PK-A5HB-01 1 1230156 1230156 G A ACAP3 Silent p.G618G 0.45 TCGA-PK-A5HB-01 1 1247523 1247523 G T CPSF3L Missense_Mutation p.L544M 0.43 deleterious(0.01) benign(0.26) TCGA-PK-A5HB-01 1 12632790 12632792 GGA - DHRS3 In_Frame_Del p.L263del 0.34 TCGA-PK-A5HB-01 1 1275439 1275439 C A DVL1 Missense_Mutation p.E296D 0.45 deleterious(0) possibly_damaging(0.801) TCGA-PK-A5HB-01 1 13475084 13475084 C T PRAMEF18 Missense_Mutation p.A349T 0.42 deleterious(0.02) possibly_damaging(0.906) TCGA-PK-A5HB-01 1 144854181 144854181 G A PDE4DIP Missense_Mutation p.A2328V 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-PK-A5HB-01 1 144871772 144871772 G T PDE4DIP Silent p.G1730G 0.26 TCGA-PK-A5HB-01 1 145579296 145579296 C T PIAS3 Silent p.L211L 0.53 TCGA-PK-A5HB-01 1 150039888 150039888 C T VPS45 5'UTR 0.39 TCGA-PK-A5HB-01 1 150195565 150195565 T A ANP32E Missense_Mutation p.D228V 0.38 deleterious(0.03) unknown(0) TCGA-PK-A5HB-01 1 150298336 150298336 A G PRPF3 Silent p.L91L 0.37 TCGA-PK-A5HB-01 1 150636172 150636172 G A GOLPH3L Missense_Mutation p.A84V 0.44 deleterious(0.01) benign(0.299) TCGA-PK-A5HB-01 1 151040476 151040476 T - MLLT11 3'UTR 0.47 TCGA-PK-A5HB-01 1 151065754 151065754 G T GABPB2 Missense_Mutation p.E121D 0.41 deleterious(0.02) benign(0.119) TCGA-PK-A5HB-01 1 151787534 151787534 G C RORC Missense_Mutation p.S222R 0.47 tolerated(0.35) benign(0.008) TCGA-PK-A5HB-01 1 151789189 151789189 G A RORC Silent p.C83C 0.52 TCGA-PK-A5HB-01 1 151811467 151811467 C T C2CD4D 5'UTR 0.44 TCGA-PK-A5HB-01 1 152883314 152883314 G A IVL Silent p.E347E 0.43 TCGA-PK-A5HB-01 1 153122330 153122330 T C SPRR2G 3'UTR 0.36 TCGA-PK-A5HB-01 1 154224048 154224048 T C UBAP2L Missense_Mutation p.V528A 0.34 tolerated(0.66) unknown(0) TCGA-PK-A5HB-01 1 154224069 154224069 C - UBAP2L Frame_Shift_Del p.T537Pfs*78 0.23 TCGA-PK-A5HB-01 1 154962713 154962713 T A FLAD1 Missense_Mutation p.F448L 0.40 deleterious(0) probably_damaging(0.991) TCGA-PK-A5HB-01 1 154987091 154987091 G A ZBTB7B Intron 0.44 TCGA-PK-A5HB-01 1 155452085 155452085 C T ASH1L Silent p.T192T 0.40 TCGA-PK-A5HB-01 1 155885735 155885735 G A KIAA0907 Missense_Mutation p.A525V 0.32 tolerated(0.06) benign(0.217) TCGA-PK-A5HB-01 1 156051627 156051627 C T MEX3A Missense_Mutation p.A55T 0.43 tolerated_low_confidence(0.29) unknown(0) TCGA-PK-A5HB-01 1 156779155 156779155 T C SH2D2A Missense_Mutation p.N291S 0.32 tolerated(0.09) benign(0.098) TCGA-PK-A5HB-01 1 156779558 156779558 T C SH2D2A Silent p.S213S 0.49 TCGA-PK-A5HB-01 1 156926236 156926236 T A ARHGEF11 Silent p.L549L 0.47 TCGA-PK-A5HB-01 1 156954154 156954154 A T ARHGEF11 Missense_Mutation p.V67D 0.40 deleterious(0) probably_damaging(0.96) TCGA-PK-A5HB-01 1 157803262 157803262 G A CD5L Silent p.C253C 0.53 TCGA-PK-A5HB-01 1 157804424 157804424 T C CD5L Missense_Mutation p.Q164R 0.38 tolerated(0.19) benign(0.113) TCGA-PK-A5HB-01 1 158064671 158064671 A G KIRREL Missense_Mutation p.T679A 0.40 tolerated(0.5) benign(0.001) TCGA-PK-A5HB-01 1 158389762 158389762 A T OR10K2 Missense_Mutation p.S299T 0.37 tolerated(0.6) benign(0.009) TCGA-PK-A5HB-01 1 159890312 159890312 C T TAGLN2 5'UTR 0.44 TCGA-PK-A5HB-01 1 159898610 159898610 C - IGSF9 Frame_Shift_Del p.T858Lfs*70 0.26 TCGA-PK-A5HB-01 1 160011970 160011970 G A KCNJ10 Missense_Mutation p.A118V 0.42 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 1 160969185 160969185 C T F11R Splice_Site p.X272_splice 0.37 TCGA-PK-A5HB-01 1 161007709 161007709 T A TSTD1 Missense_Mutation p.Y97F 0.40 tolerated(0.15) possibly_damaging(0.631) TCGA-PK-A5HB-01 1 161130942 161130942 G A USP21 Missense_Mutation p.S171N 0.47 deleterious_low_confidence(0.01) benign(0.043) TCGA-PK-A5HB-01 1 161173239 161173239 G T NDUFS2 Missense_Mutation p.Q36H 0.07 tolerated_low_confidence(0.28) benign(0.001) TCGA-PK-A5HB-01 1 161514695 161514695 G A FCGR3A Missense_Mutation p.H161Y 0.35 tolerated(0.28) possibly_damaging(0.808) TCGA-PK-A5HB-01 1 161514700 161514700 G A FCGR3A Missense_Mutation p.P159L 0.35 tolerated(0.08) benign(0.006) TCGA-PK-A5HB-01 1 16174528 16174528 A C SPEN 5'UTR 0.41 TCGA-PK-A5HB-01 1 16174571 16174571 G T SPEN Silent p.R3R 0.45 TCGA-PK-A5HB-01 1 16174581 16174581 C T SPEN Missense_Mutation p.H7Y 0.44 benign(0.001) TCGA-PK-A5HB-01 1 162467903 162467903 A T UHMK1 Missense_Mutation p.Y38F 0.35 tolerated(0.5) benign(0.002) TCGA-PK-A5HB-01 1 16461615 16461615 C T EPHA2 Missense_Mutation p.D500N 0.46 tolerated(0.08) benign(0.092) TCGA-PK-A5HB-01 1 166135378 166135378 C T FAM78B Silent p.E36E 0.41 TCGA-PK-A5HB-01 1 16802916 16802916 T C CROCCP3 RNA 0.37 TCGA-PK-A5HB-01 1 169578907 169578907 C G SELP Missense_Mutation p.E390Q 0.48 tolerated(0.31) benign(0.073) TCGA-PK-A5HB-01 1 171168622 171168622 G A FMO2 Missense_Mutation p.A208T 0.44 tolerated(0.23) benign(0.403) TCGA-PK-A5HB-01 1 173616087 173616087 G C ANKRD45 Missense_Mutation p.L132V 0.39 deleterious(0.05) possibly_damaging(0.559) TCGA-PK-A5HB-01 1 173886491 173886491 G T SERPINC1 5'UTR 0.49 TCGA-PK-A5HB-01 1 17395508 17395508 G A PADI2 3'UTR 0.45 TCGA-PK-A5HB-01 1 174517082 174517082 T A RABGAP1L Intron 0.40 TCGA-PK-A5HB-01 1 175292459 175292459 A T TNR 3'UTR 0.44 TCGA-PK-A5HB-01 1 180471390 180471390 T C ACBD6 Silent p.S4S 0.48 TCGA-PK-A5HB-01 1 180904988 180904988 G A KIAA1614 Missense_Mutation p.R648Q 0.44 tolerated(0.07) possibly_damaging(0.656) TCGA-PK-A5HB-01 1 181702837 181702837 C T CACNA1E Silent p.T1071T 0.05 TCGA-PK-A5HB-01 1 181762806 181762806 A C CACNA1E Silent p.P1968P 0.36 TCGA-PK-A5HB-01 1 182026897 182026897 G C ZNF648 Missense_Mutation p.D83E 0.51 tolerated(0.43) benign(0.001) TCGA-PK-A5HB-01 1 1848206 1848206 A T CALML6 Missense_Mutation p.N90I 0.42 deleterious(0) possibly_damaging(0.877) TCGA-PK-A5HB-01 1 186908147 186908147 T C PLA2G4A Missense_Mutation p.S235P 0.47 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 1 193149518 193149518 T C B3GALT2 Missense_Mutation p.K392R 0.47 tolerated(0.53) benign(0.061) TCGA-PK-A5HB-01 1 1959038 1959038 G A GABRD Missense_Mutation p.D165N 0.46 tolerated(0.96) possibly_damaging(0.853) TCGA-PK-A5HB-01 1 197073232 197073232 T - ASPM Frame_Shift_Del p.I1717* 0.26 TCGA-PK-A5HB-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.31 TCGA-PK-A5HB-01 1 200974545 200974545 G A KIF21B Missense_Mutation p.A208V 0.46 deleterious(0) benign(0.076) TCGA-PK-A5HB-01 1 201368515 201368515 G A LAD1 5'UTR 0.48 TCGA-PK-A5HB-01 1 203276590 203276590 G A BTG2 3'UTR 0.41 TCGA-PK-A5HB-01 1 203317354 203317354 G C FMOD Silent p.L15L 0.46 TCGA-PK-A5HB-01 1 203832839 203832839 G CA SNRPE Frame_Shift_Ins p.E44Qfs*8 0.28 TCGA-PK-A5HB-01 1 205417469 205417469 A G MIR135B RNA 0.41 TCGA-PK-A5HB-01 1 206634812 206634812 C T SRGAP2 3'UTR 0.41 TCGA-PK-A5HB-01 1 206769135 206769135 G A EIF2D Missense_Mutation p.P481S 0.47 tolerated(0.06) probably_damaging(0.999) TCGA-PK-A5HB-01 1 211462519 211462519 G A RCOR3 Splice_Site p.X241_splice 0.39 TCGA-PK-A5HB-01 1 213125126 213125126 T C VASH2 Missense_Mutation p.V81A 0.47 tolerated(0.2) benign(0.103) TCGA-PK-A5HB-01 1 213277826 213277826 G T RPS6KC1 Missense_Mutation p.R98I 0.46 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 1 216246596 216246596 G A USH2A Silent p.V1873V 0.41 TCGA-PK-A5HB-01 1 21940490 21940490 C T RAP1GAP Silent p.R192R 0.50 TCGA-PK-A5HB-01 1 222737423 222737423 G A TAF1A Silent p.F313F 0.35 TCGA-PK-A5HB-01 1 223395444 223395444 C T SUSD4 3'UTR 0.50 TCGA-PK-A5HB-01 1 223568189 223568189 C T C1orf65 Missense_Mutation p.R458W 0.41 tolerated(0.19) benign(0.019) TCGA-PK-A5HB-01 1 223947169 223947169 G C CAPN2 Missense_Mutation p.K505N 0.37 deleterious(0.03) probably_damaging(0.955) TCGA-PK-A5HB-01 1 225977139 225977139 G A SRP9 3'UTR 0.34 TCGA-PK-A5HB-01 1 225977148 225977148 G A SRP9 3'UTR 0.30 TCGA-PK-A5HB-01 1 226573266 226573266 G A PARP1 Missense_Mutation p.A317V 0.05 deleterious(0.04) benign(0.405) TCGA-PK-A5HB-01 1 228347154 228347154 G A GJC2 3'UTR 0.38 TCGA-PK-A5HB-01 1 228475560 228475560 C T OBSCN Missense_Mutation p.A3666V 0.07 benign(0.09) TCGA-PK-A5HB-01 1 228612579 228612579 A T HIST3H3 3'UTR 0.44 TCGA-PK-A5HB-01 1 230921739 230921739 A T CAPN9 Silent p.G498G 0.45 TCGA-PK-A5HB-01 1 231079568 231079568 A G TTC13 Missense_Mutation p.F219S 0.46 deleterious(0) benign(0.143) TCGA-PK-A5HB-01 1 231349649 231349649 C T TRIM67 Nonsense_Mutation p.Q738* 0.51 TCGA-PK-A5HB-01 1 231396359 231396359 C T GNPAT Missense_Mutation p.A123V 0.43 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 1 231471391 231471391 C T EXOC8 Missense_Mutation p.A701T 0.43 tolerated(0.07) possibly_damaging(0.468) TCGA-PK-A5HB-01 1 232945674 232945674 A C MAP10 3'UTR 0.49 TCGA-PK-A5HB-01 1 2341850 2341850 C T PEX10 Silent p.L51L 0.48 TCGA-PK-A5HB-01 1 23636987 23636987 T A HNRNPR Missense_Mutation p.Q624L 0.37 deleterious_low_confidence(0) unknown(0) TCGA-PK-A5HB-01 1 23763445 23763445 G A ASAP3 Nonsense_Mutation p.Q479* 0.44 TCGA-PK-A5HB-01 1 240255872 240255872 G - FMN2 Frame_Shift_Del p.G156Afs*296 0.35 TCGA-PK-A5HB-01 1 24664169 24664169 A G GRHL3 Missense_Mutation p.K244E 0.42 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 1 24706214 24706214 A G STPG1 Missense_Mutation p.S131P 0.31 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 1 248844883 248844883 G A OR14I1 Silent p.P241P 0.60 TCGA-PK-A5HB-01 1 249106288 249106288 A G SH3BP5L Silent p.D331D 0.42 TCGA-PK-A5HB-01 1 24975468 24975468 G A SRRM1 Missense_Mutation p.G118E 0.33 probably_damaging(1) TCGA-PK-A5HB-01 1 2522472 2522472 C T MMEL1 Missense_Mutation p.R766Q 0.44 tolerated(0.27) benign(0.015) TCGA-PK-A5HB-01 1 27720657 27720657 G A GPR3 Missense_Mutation p.A119T 0.46 tolerated(0.08) possibly_damaging(0.792) TCGA-PK-A5HB-01 1 32084894 32084894 A G HCRTR1 Missense_Mutation p.Y34C 0.49 tolerated(0.08) possibly_damaging(0.865) TCGA-PK-A5HB-01 1 32197006 32197006 C T BAI2 Missense_Mutation p.V1259I 0.46 tolerated(0.84) benign(0.123) TCGA-PK-A5HB-01 1 32198634 32198634 G A BAI2 Missense_Mutation p.A1188V 0.03 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 1 3380095 3380095 G A ARHGEF16 Silent p.L149L 0.44 TCGA-PK-A5HB-01 1 3388308 3388308 G T ARHGEF16 Intron 0.33 TCGA-PK-A5HB-01 1 36437666 36437666 T A AGO3 Missense_Mutation p.D118E 0.42 tolerated(0.93) benign(0.101) TCGA-PK-A5HB-01 1 36437741 36437741 G A AGO3 Silent p.R143R 0.29 TCGA-PK-A5HB-01 1 3672052 3672052 G T CCDC27 Missense_Mutation p.E158D 0.42 tolerated(0.48) possibly_damaging(0.801) TCGA-PK-A5HB-01 1 3807605 3807605 T G C1orf174 Missense_Mutation p.K49T 0.59 deleterious(0) probably_damaging(0.928) TCGA-PK-A5HB-01 1 38158163 38158163 A G CDCA8 5'UTR 0.50 TCGA-PK-A5HB-01 1 39989241 39989241 G A BMP8A Intron 0.39 TCGA-PK-A5HB-01 1 40235347 40235347 C T OXCT2 3'UTR 0.16 TCGA-PK-A5HB-01 1 43166582 43166582 C T YBX1 Missense_Mutation p.R291C 0.10 tolerated(0.19) benign(0.001) TCGA-PK-A5HB-01 1 43296425 43296426 - T ERMAP Intron 0.43 TCGA-PK-A5HB-01 1 43308843 43308843 C T ERMAP Silent p.I456I 0.39 TCGA-PK-A5HB-01 1 44083409 44083409 G A PTPRF Missense_Mutation p.V1400I 0.39 tolerated(1) benign(0.01) TCGA-PK-A5HB-01 1 44466854 44466854 G T SLC6A9 Silent p.G512G 0.43 TCGA-PK-A5HB-01 1 44466855 44466855 C G SLC6A9 Missense_Mutation p.G512A 0.43 deleterious(0.03) probably_damaging(1) TCGA-PK-A5HB-01 1 46509408 46509410 GTT - PIK3R3 In_Frame_Del p.N441del 0.47 TCGA-PK-A5HB-01 1 46509521 46509521 A G PIK3R3 Missense_Mutation p.C404R 0.47 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 1 47182080 47182080 G A EFCAB14 Missense_Mutation p.P74L 0.39 deleterious(0.02) possibly_damaging(0.79) TCGA-PK-A5HB-01 1 47904233 47904233 G A FOXD2 Silent p.Q142Q 0.43 TCGA-PK-A5HB-01 1 50885264 50885264 C T DMRTA2 Silent p.R234R 0.48 TCGA-PK-A5HB-01 1 52552390 52552390 T G BTF3L4 Missense_Mutation p.V146G 0.39 deleterious(0.01) benign(0.014) TCGA-PK-A5HB-01 1 53068170 53068170 C T GPX7 Missense_Mutation p.A30V 0.45 tolerated(1) benign(0.006) TCGA-PK-A5HB-01 1 53158531 53158531 G A COA7 Missense_Mutation p.R39W 0.44 deleterious(0.01) probably_damaging(0.959) TCGA-PK-A5HB-01 1 53287340 53287340 T C ZYG11B 3'UTR 0.49 TCGA-PK-A5HB-01 1 53580749 53580749 G A SLC1A7 Intron 0.33 TCGA-PK-A5HB-01 1 53580756 53580756 G A SLC1A7 Intron 0.38 TCGA-PK-A5HB-01 1 54423901 54423902 - T LRRC42 Frame_Shift_Ins p.G186Wfs*3 0.23 TCGA-PK-A5HB-01 1 59042424 59042424 G A TACSTD2 Silent p.R135R 0.50 TCGA-PK-A5HB-01 1 60312772 60312772 C T HOOK1 Silent p.L282L 0.42 TCGA-PK-A5HB-01 1 60338659 60338659 A G HOOK1 3'UTR 0.48 TCGA-PK-A5HB-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.47 TCGA-PK-A5HB-01 1 63282309 63282309 A T ATG4C Missense_Mutation p.N75I 0.41 deleterious(0) possibly_damaging(0.835) TCGA-PK-A5HB-01 1 63790218 63790218 A G FOXD3 3'UTR 0.20 TCGA-PK-A5HB-01 1 63999139 63999139 T C EFCAB7 Silent p.Y167Y 0.50 TCGA-PK-A5HB-01 1 68512838 68512838 A G DIRAS3 Missense_Mutation p.V48A 0.40 deleterious(0) probably_damaging(0.988) TCGA-PK-A5HB-01 1 7721841 7721841 G C CAMTA1 Silent p.V240V 0.45 TCGA-PK-A5HB-01 1 7837354 7837354 G A VAMP3 Silent p.R69R 0.37 TCGA-PK-A5HB-01 1 7887208 7887208 C T PER3 Missense_Mutation p.A732V 0.53 deleterious(0.02) possibly_damaging(0.739) TCGA-PK-A5HB-01 1 8074279 8074279 G C ERRFI1 Missense_Mutation p.T127S 0.55 tolerated(0.57) benign(0.015) TCGA-PK-A5HB-01 1 90486370 90486370 C T ZNF326 Silent p.H398H 0.39 TCGA-PK-A5HB-01 1 91790300 91790300 A G HFM1 Missense_Mutation p.Y787H 0.46 deleterious(0) probably_damaging(0.97) TCGA-PK-A5HB-01 1 92200429 92200429 C T TGFBR3 Missense_Mutation p.E158K 0.22 tolerated(0.13) benign(0.049) TCGA-PK-A5HB-01 1 92647016 92647016 C T KIAA1107 Missense_Mutation p.S821F 0.40 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 1 9657097 9657097 G A TMEM201 Missense_Mutation p.A139T 0.38 tolerated(0.73) benign(0.009) TCGA-PK-A5HB-01 1 979279 979279 C - AGRN Frame_Shift_Del p.P627Rfs*105 0.33 TCGA-PK-A5HB-01 20 13850197 13850197 C T SEL1L2 Missense_Mutation p.E403K 0.77 deleterious(0.01) probably_damaging(0.977) TCGA-PK-A5HB-01 20 23065518 23065518 G - CD93 Frame_Shift_Del p.L438Sfs*150 0.47 TCGA-PK-A5HB-01 20 25829509 25829509 A T FAM182B 5'UTR 0.04 TCGA-PK-A5HB-01 20 3147820 3147820 G - LZTS3 5'UTR 0.49 TCGA-PK-A5HB-01 20 33874418 33874418 G T FAM83C Missense_Mutation p.L722M 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-PK-A5HB-01 20 34022048 34022048 C A GDF5 Missense_Mutation p.G389C 0.47 deleterious(0) probably_damaging(0.943) TCGA-PK-A5HB-01 20 35128865 35128866 - CTA DLGAP4 In_Frame_Ins p.S785_S786insY 0.20 TCGA-PK-A5HB-01 20 35288763 35288763 G A NDRG3 Missense_Mutation p.P279S 0.23 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 20 3546042 3546042 G T ATRN Missense_Mutation p.V612F 0.64 deleterious(0) possibly_damaging(0.463) TCGA-PK-A5HB-01 20 35776252 35776252 C T MROH8 Missense_Mutation p.D406N 0.38 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 20 35833240 35833240 C T RPN2 Missense_Mutation p.A209V 0.43 tolerated(0.05) probably_damaging(0.983) TCGA-PK-A5HB-01 20 35833294 35833294 C T RPN2 Missense_Mutation p.S227F 0.41 deleterious(0.03) possibly_damaging(0.866) TCGA-PK-A5HB-01 20 36767875 36767875 G A TGM2 Silent p.S427S 0.06 TCGA-PK-A5HB-01 20 36997687 36997687 C T LBP Missense_Mutation p.P344S 0.40 tolerated(0.65) benign(0.007) TCGA-PK-A5HB-01 20 39830791 39830791 C A ZHX3 Missense_Mutation p.E922D 0.41 tolerated(0.1) possibly_damaging(0.692) TCGA-PK-A5HB-01 20 40713472 40713472 T G PTPRT Missense_Mutation p.Y1329S 0.46 deleterious(0.02) benign(0.008) TCGA-PK-A5HB-01 20 42788359 42788359 C T JPH2 Silent p.Q356Q 0.44 TCGA-PK-A5HB-01 20 43348580 43348580 C A WISP2 Missense_Mutation p.P35T 0.45 tolerated(0.71) benign(0.048) TCGA-PK-A5HB-01 20 43726370 43726370 C T KCNS1 Missense_Mutation p.R348H 0.52 deleterious(0) probably_damaging(0.965) TCGA-PK-A5HB-01 20 44586256 44586256 G A ZNF335 Missense_Mutation p.A804V 0.27 tolerated(0.07) benign(0.06) TCGA-PK-A5HB-01 20 45865241 45865241 G A ZMYND8 Silent p.I849I 0.46 TCGA-PK-A5HB-01 20 47991197 47991197 G T KCNB1 Silent p.R300R 0.40 TCGA-PK-A5HB-01 20 49508387 49508387 C G ADNP Missense_Mutation p.S955T 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.899) TCGA-PK-A5HB-01 20 49620487 49620487 G T KCNG1 3'UTR 0.43 TCGA-PK-A5HB-01 20 50769338 50769338 T A ZFP64 Missense_Mutation p.I465F 0.38 tolerated(0.4) benign(0.068) TCGA-PK-A5HB-01 20 51872146 51872146 T C TSHZ2 Missense_Mutation p.S717P 0.40 tolerated_low_confidence(0.19) benign(0.355) TCGA-PK-A5HB-01 20 56099286 56099286 A - CTCFL Intron 0.50 TCGA-PK-A5HB-01 20 57429537 57429537 C A GNAS Missense_Mutation p.A406E 0.40 tolerated_low_confidence(0.32) unknown(0) TCGA-PK-A5HB-01 20 60738545 60738545 G A SS18L1 Silent p.S196S 0.43 TCGA-PK-A5HB-01 20 60754421 60754421 C T SS18L1 3'UTR 0.32 TCGA-PK-A5HB-01 20 60887715 60887715 C - LAMA5 Frame_Shift_Del p.G3067Afs*40 0.27 TCGA-PK-A5HB-01 20 61444339 61444339 C T OGFR Missense_Mutation p.R458W 0.37 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 20 62178771 62178773 AGA - SRMS In_Frame_Del p.F15del 0.35 TCGA-PK-A5HB-01 20 896570 896570 G T ANGPT4 Missense_Mutation p.N96K 0.84 deleterious(0) probably_damaging(0.981) TCGA-PK-A5HB-01 21 15481359 15481359 C T LIPI Silent p.E467E 0.46 TCGA-PK-A5HB-01 21 16337877 16337877 A T NRIP1 Missense_Mutation p.D879E 0.52 tolerated(0.44) benign(0.016) TCGA-PK-A5HB-01 21 30547317 30547317 T C MAP3K7CL 3'UTR 0.25 TCGA-PK-A5HB-01 21 32585718 32585718 C T TIAM1 Missense_Mutation p.G738D 0.46 tolerated(0.14) benign(0.035) TCGA-PK-A5HB-01 21 33063193 33063193 T A SCAF4 Missense_Mutation p.Y601F 0.37 possibly_damaging(0.481) TCGA-PK-A5HB-01 21 33068463 33068463 C T SCAF4 Missense_Mutation p.R344Q 0.38 benign(0.097) TCGA-PK-A5HB-01 21 34922970 34922970 A G SON Missense_Mutation p.E478G 0.41 benign(0.403) TCGA-PK-A5HB-01 21 35166743 35166743 A G ITSN1 Silent p.E641E 0.50 TCGA-PK-A5HB-01 21 35190568 35190568 A - ITSN1 Intron 0.30 TCGA-PK-A5HB-01 21 42647626 42647626 T A BACE2 3'UTR 0.42 TCGA-PK-A5HB-01 21 43510406 43510406 A T UMODL1 Splice_Site p.X264_splice 0.50 TCGA-PK-A5HB-01 21 43531012 43531012 C T UMODL1 Silent p.G560G 0.53 TCGA-PK-A5HB-01 21 43864737 43864737 C T UBASH3A Missense_Mutation p.A611V 0.45 tolerated(0.89) benign(0.015) TCGA-PK-A5HB-01 21 45744513 45744513 A G PFKL Missense_Mutation p.D597G 0.42 deleterious(0.01) benign(0.107) TCGA-PK-A5HB-01 21 45994477 45994477 G A KRTAP10-4 Missense_Mutation p.C281Y 0.45 deleterious(0.01) unknown(0) TCGA-PK-A5HB-01 21 46020976 46020976 C T KRTAP10-7 Missense_Mutation p.T152I 0.43 deleterious(0.05) unknown(0) TCGA-PK-A5HB-01 21 46047555 46047555 C T KRTAP10-9 Missense_Mutation p.S156F 0.48 tolerated(0.07) unknown(0) TCGA-PK-A5HB-01 21 46689778 46689778 C A POFUT2 Missense_Mutation p.V330L 0.36 tolerated(0.32) possibly_damaging(0.781) TCGA-PK-A5HB-01 21 46917558 46917559 - C COL18A1 Frame_Shift_Ins p.G1072Rfs*9 0.33 TCGA-PK-A5HB-01 21 47321002 47321002 C T PCBP3 Missense_Mutation p.A105V 0.38 deleterious(0) benign(0.436) TCGA-PK-A5HB-01 21 47602741 47602741 T A SPATC1L 5'UTR 0.32 TCGA-PK-A5HB-01 21 47858133 47858133 T C PCNT Silent p.N3052N 0.37 TCGA-PK-A5HB-01 22 17073304 17073304 A G CCT8L2 Missense_Mutation p.V46A 0.36 deleterious(0.05) benign(0.415) TCGA-PK-A5HB-01 22 17443597 17443597 C - GAB4 3'UTR 0.34 TCGA-PK-A5HB-01 22 17472963 17472963 G T GAB4 Missense_Mutation p.T93N 0.43 deleterious(0) possibly_damaging(0.72) TCGA-PK-A5HB-01 22 18301894 18301894 C A MICAL3 Missense_Mutation p.G1178V 0.49 benign(0.07) TCGA-PK-A5HB-01 22 18609562 18609562 G A TUBA8 Missense_Mutation p.A273T 0.07 deleterious_low_confidence(0.01) benign(0.41) TCGA-PK-A5HB-01 22 19207427 19207427 C T CLTCL1 Silent p.E962E 0.40 TCGA-PK-A5HB-01 22 19373067 19373067 C - HIRA Frame_Shift_Del p.E436Rfs*11 0.30 TCGA-PK-A5HB-01 22 20812147 20812147 C T KLHL22 Missense_Mutation p.R418H 0.46 tolerated(0.08) probably_damaging(0.971) TCGA-PK-A5HB-01 22 21172828 21172828 C A PI4KA Nonsense_Mutation p.E267* 0.29 TCGA-PK-A5HB-01 22 21334397 21334397 C T AIFM3 Missense_Mutation p.R581W 0.41 deleterious(0.02) probably_damaging(0.918) TCGA-PK-A5HB-01 22 21363847 21363847 C T AC002472.1 5'Flank 0.45 TCGA-PK-A5HB-01 22 21988695 21988695 A T CCDC116 Missense_Mutation p.S153C 0.49 tolerated(1) benign(0.016) TCGA-PK-A5HB-01 22 21989306 21989306 C T CCDC116 Silent p.S318S 0.44 TCGA-PK-A5HB-01 22 22153374 22153374 T C MAPK1 Missense_Mutation p.D179G 0.46 tolerated(0.09) probably_damaging(0.934) TCGA-PK-A5HB-01 22 22277674 22277674 C T PPM1F Missense_Mutation p.G386R 0.41 deleterious(0) possibly_damaging(0.737) TCGA-PK-A5HB-01 22 22682012 22682012 C T IGLV1-50 Missense_Mutation p.P65L 0.41 deleterious_low_confidence(0) possibly_damaging(0.705) TCGA-PK-A5HB-01 22 23637231 23637231 G A BCR Silent p.E967E 0.37 TCGA-PK-A5HB-01 22 23950788 23950788 C T C22orf43 3'UTR 0.40 TCGA-PK-A5HB-01 22 24236679 24236679 A T MIF Silent p.V6V 0.40 TCGA-PK-A5HB-01 22 24236682 24236682 C A MIF Missense_Mutation p.N7K 0.40 deleterious(0.01) possibly_damaging(0.85) TCGA-PK-A5HB-01 22 25601272 25601272 G A CRYBB3 Missense_Mutation p.S138N 0.45 deleterious(0.03) benign(0.073) TCGA-PK-A5HB-01 22 29707029 29707029 G - GAS2L1 3'UTR 0.44 TCGA-PK-A5HB-01 22 30197089 30197089 G A ASCC2 Missense_Mutation p.P527S 0.42 deleterious(0.04) benign(0.022) TCGA-PK-A5HB-01 22 30639991 30639991 C T LIF Silent p.V86V 0.44 TCGA-PK-A5HB-01 22 31740473 31740473 C T PATZ1 Silent p.R372R 0.44 TCGA-PK-A5HB-01 22 31741473 31741473 C A PATZ1 Missense_Mutation p.R39L 0.52 deleterious_low_confidence(0) benign(0.023) TCGA-PK-A5HB-01 22 32753975 32753975 C T RFPL3 5'UTR 0.44 TCGA-PK-A5HB-01 22 35815946 35815946 C T MCM5 Silent p.S591S 0.43 TCGA-PK-A5HB-01 22 36055125 36055125 T A APOL6 Missense_Mutation p.Y172N 0.50 deleterious(0.04) possibly_damaging(0.616) TCGA-PK-A5HB-01 22 36902258 36902258 C T FOXRED2 Missense_Mutation p.R71H 0.44 tolerated(0.17) benign(0.013) TCGA-PK-A5HB-01 22 37398216 37398216 G T TEX33 Missense_Mutation p.P51T 0.40 deleterious(0.02) possibly_damaging(0.803) TCGA-PK-A5HB-01 22 37602677 37602677 G T SSTR3 Missense_Mutation p.P389H 0.51 tolerated_low_confidence(0.22) benign(0.003) TCGA-PK-A5HB-01 22 37891531 37891531 C T CARD10 Missense_Mutation p.R789H 0.43 deleterious(0) probably_damaging(0.935) TCGA-PK-A5HB-01 22 38205970 38205970 A G GCAT Missense_Mutation p.I71V 0.41 tolerated_low_confidence(0.54) benign(0) TCGA-PK-A5HB-01 22 38221167 38221167 G A GALR3 Missense_Mutation p.S266N 0.41 tolerated(1) benign(0.007) TCGA-PK-A5HB-01 22 38617465 38617465 G A TMEM184B 3'UTR 0.50 TCGA-PK-A5HB-01 22 38620883 38620883 G A TMEM184B Silent p.F297F 0.36 TCGA-PK-A5HB-01 22 38982128 38982128 C T FAM227A Missense_Mutation p.E592K 0.34 tolerated_low_confidence(0.19) benign(0.004) TCGA-PK-A5HB-01 22 41256962 41256962 A G DNAJB7 3'UTR 0.62 TCGA-PK-A5HB-01 22 41257875 41257877 CTT - DNAJB7 In_Frame_Del p.E41del 0.31 TCGA-PK-A5HB-01 22 41621937 41621937 C T L3MBTL2 Missense_Mutation p.P499L 0.42 tolerated(0.09) benign(0.089) TCGA-PK-A5HB-01 22 41631316 41631316 C A CHADL Missense_Mutation p.A699S 0.44 deleterious(0.02) possibly_damaging(0.572) TCGA-PK-A5HB-01 22 41832765 41832765 G A TOB2 Silent p.G195G 0.48 TCGA-PK-A5HB-01 22 42099452 42099453 - T MEI1 Frame_Shift_Ins p.G100Wfs*17 0.29 TCGA-PK-A5HB-01 22 42393017 42393017 A T SEPT3 3'UTR 0.51 TCGA-PK-A5HB-01 22 42473559 42473559 G A FAM109B Missense_Mutation p.A88T 0.42 deleterious(0.03) benign(0.181) TCGA-PK-A5HB-01 22 43089757 43089757 G - A4GALT Frame_Shift_Del p.T68Pfs*46 0.48 TCGA-PK-A5HB-01 22 46627995 46627995 A G PPARA Missense_Mutation p.T340A 0.41 deleterious(0.01) probably_damaging(0.988) TCGA-PK-A5HB-01 22 46654833 46654833 A G PKDREJ Missense_Mutation p.S1463P 0.30 tolerated(0.11) benign(0.345) TCGA-PK-A5HB-01 22 46657944 46657944 C T PKDREJ Missense_Mutation p.D426N 0.52 tolerated(1) benign(0.007) TCGA-PK-A5HB-01 22 46658470 46658470 C G PKDREJ Silent p.P250P 0.44 TCGA-PK-A5HB-01 22 46835094 46835094 G A CELSR1 Silent p.I1466I 0.39 TCGA-PK-A5HB-01 22 46931004 46931004 C T CELSR1 Silent p.T688T 0.43 TCGA-PK-A5HB-01 22 50636363 50636363 C T TRABD Silent p.V261V 0.48 TCGA-PK-A5HB-01 22 50705599 50705599 A G MAPK11 Missense_Mutation p.L151P 0.39 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 22 50714091 50714091 C T PLXNB2 3'UTR 0.44 TCGA-PK-A5HB-01 22 51160574 51160574 C T SHANK3 Missense_Mutation p.S1454L 0.43 probably_damaging(0.994) TCGA-PK-A5HB-01 2 101612416 101612416 G A NPAS2 3'UTR 0.75 TCGA-PK-A5HB-01 2 101652587 101652587 A G TBC1D8 Missense_Mutation p.V484A 0.07 tolerated(1) benign(0.001) TCGA-PK-A5HB-01 2 102483026 102483026 C T MAP4K4 Missense_Mutation p.R703C 0.76 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-PK-A5HB-01 2 103300745 103300745 T C SLC9A2 Silent p.L459L 0.88 TCGA-PK-A5HB-01 2 108609479 108609479 T A SLC5A7 Nonsense_Mutation p.L115* 0.73 TCGA-PK-A5HB-01 2 110375208 110375208 T C SOWAHC 3'UTR 0.79 TCGA-PK-A5HB-01 2 110902136 110902136 G A NPHP1 Missense_Mutation p.L511F 0.72 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 2 116101426 116101426 C A DPP10 Missense_Mutation p.S74Y 0.29 deleterious(0) benign(0.132) TCGA-PK-A5HB-01 2 121103941 121103941 C T INHBB Silent p.G59G 0.89 TCGA-PK-A5HB-01 2 121103965 121103965 C T INHBB Silent p.L67L 0.83 TCGA-PK-A5HB-01 2 121106703 121106703 A G INHBB Silent p.L159L 0.74 TCGA-PK-A5HB-01 2 130900050 130900050 G A CCDC74B Intron 0.14 TCGA-PK-A5HB-01 2 131521542 131521542 C A AMER3 Missense_Mutation p.P633T 0.45 tolerated(0.12) benign(0.066) TCGA-PK-A5HB-01 2 131521962 131521962 C T AMER3 Nonsense_Mutation p.Q773* 0.44 TCGA-PK-A5HB-01 2 131522852 131522852 G A AMER3 3'UTR 0.42 TCGA-PK-A5HB-01 2 131797625 131797625 G A ARHGEF4 Missense_Mutation p.A262T 0.81 tolerated(0.33) benign(0.004) TCGA-PK-A5HB-01 2 137814011 137814011 G A THSD7B Missense_Mutation p.G54E 0.50 deleterious(0) probably_damaging(0.969) TCGA-PK-A5HB-01 2 141259364 141259364 A G LRP1B Silent p.D2914D 0.38 TCGA-PK-A5HB-01 2 141707930 141707930 G A LRP1B Missense_Mutation p.H1004Y 0.46 possibly_damaging(0.845) TCGA-PK-A5HB-01 2 152107742 152107743 - TC RBM43 Frame_Shift_Ins p.K251Rfs*12 0.29 TCGA-PK-A5HB-01 2 15694258 15694258 C T NBAS Missense_Mutation p.A72T 0.47 deleterious(0.05) benign(0.008) TCGA-PK-A5HB-01 2 158115854 158115854 G A GALNT5 Silent p.T420T 0.46 TCGA-PK-A5HB-01 2 159954275 159954275 C T TANC1 Missense_Mutation p.S63F 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-PK-A5HB-01 2 160132121 160132121 T C WDSUB1 Silent p.R204R 0.50 TCGA-PK-A5HB-01 2 160885416 160885416 G A PLA2R1 Silent p.H300H 0.50 TCGA-PK-A5HB-01 2 162274227 162274227 G T TBR1 Missense_Mutation p.D245Y 0.37 deleterious(0) possibly_damaging(0.827) TCGA-PK-A5HB-01 2 162719408 162719408 G A SLC4A10 Missense_Mutation p.S201N 0.47 tolerated(0.54) benign(0.109) TCGA-PK-A5HB-01 2 164466944 164466944 C T FIGN Silent p.T466T 0.39 TCGA-PK-A5HB-01 2 166153538 166153538 A T SCN2A Silent p.V93V 0.43 TCGA-PK-A5HB-01 2 166226748 166226748 C T SCN2A Missense_Mutation p.A1263V 0.50 deleterious(0.01) probably_damaging(0.979) TCGA-PK-A5HB-01 2 166611442 166611442 G C GALNT3 Nonsense_Mutation p.Y508* 0.36 TCGA-PK-A5HB-01 2 166621434 166621434 C T GALNT3 Silent p.L216L 0.44 TCGA-PK-A5HB-01 2 167330837 167330837 A - SCN7A Frame_Shift_Del p.N84Kfs*42 0.22 TCGA-PK-A5HB-01 2 168099879 168099879 A C XIRP2 Missense_Mutation p.E659D 0.47 probably_damaging(0.999) TCGA-PK-A5HB-01 2 169948425 169948425 A G DHRS9 Missense_Mutation p.D233G 0.43 deleterious(0.01) benign(0.043) TCGA-PK-A5HB-01 2 175264719 175264720 - G SCRN3 Frame_Shift_Ins p.A79Gfs*7 0.29 TCGA-PK-A5HB-01 2 178083867 178083867 G A HNRNPA3 Missense_Mutation p.S355N 0.36 tolerated(0.42) benign(0.184) TCGA-PK-A5HB-01 2 178285080 178285080 G T AGPS Missense_Mutation p.G115V 0.40 deleterious(0) probably_damaging(0.997) TCGA-PK-A5HB-01 2 179401241 179401241 C A TTN Silent p.V33411V 0.47 TCGA-PK-A5HB-01 2 179410344 179410344 A T TTN Silent p.P31831P 0.46 TCGA-PK-A5HB-01 2 179445148 179445148 G A TTN Missense_Mutation p.R22320C 0.42 TCGA-PK-A5HB-01 2 187627230 187627230 G A FAM171B Missense_Mutation p.E721K 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-PK-A5HB-01 2 188348876 188348876 T G TFPI Missense_Mutation p.Q201H 0.47 tolerated(0.08) benign(0.019) TCGA-PK-A5HB-01 2 190436531 190436531 T A SLC40A1 Missense_Mutation p.I142F 0.34 deleterious(0.01) benign(0.2) TCGA-PK-A5HB-01 2 190436542 190436542 G C SLC40A1 Missense_Mutation p.T138S 0.32 tolerated(0.42) benign(0.008) TCGA-PK-A5HB-01 2 190647390 190647390 T C ORMDL1 5'UTR 0.36 TCGA-PK-A5HB-01 2 191066231 191066231 A - C2orf88 3'UTR 0.47 TCGA-PK-A5HB-01 2 196799351 196799351 A T DNAH7 Silent p.V1145V 0.36 TCGA-PK-A5HB-01 2 196837087 196837087 G T DNAH7 Missense_Mutation p.S646Y 0.43 deleterious(0) possibly_damaging(0.88) TCGA-PK-A5HB-01 2 197143276 197143276 C T HECW2 Silent p.R1037R 0.41 TCGA-PK-A5HB-01 2 197865169 197865169 G A ANKRD44 Silent p.I806I 0.53 TCGA-PK-A5HB-01 2 1983497 1983497 C T MYT1L Missense_Mutation p.R18Q 0.55 deleterious(0) unknown(0) TCGA-PK-A5HB-01 2 198571904 198571904 G A MARS2 Missense_Mutation p.R592Q 0.40 tolerated_low_confidence(0.13) benign(0.032) TCGA-PK-A5HB-01 2 200789972 200789972 C T C2orf69 Missense_Mutation p.A174V 0.47 deleterious(0.04) benign(0.349) TCGA-PK-A5HB-01 2 201342866 201342866 T A SPATS2L 3'UTR 0.45 TCGA-PK-A5HB-01 2 20174293 20174293 G T WDR35 Nonsense_Mutation p.C224* 0.41 TCGA-PK-A5HB-01 2 202520986 202520986 G A MPP4 Missense_Mutation p.P412L 0.44 deleterious(0.05) benign(0.049) TCGA-PK-A5HB-01 2 202619338 202619338 T A ALS2 Missense_Mutation p.T510S 0.37 tolerated(0.18) benign(0.132) TCGA-PK-A5HB-01 2 202900893 202900893 G A FZD7 Missense_Mutation p.C508Y 0.45 deleterious(0.02) probably_damaging(0.976) TCGA-PK-A5HB-01 2 202902686 202902686 T C FZD7 3'UTR 0.44 TCGA-PK-A5HB-01 2 204032074 204032075 - A NBEAL1 Frame_Shift_Ins p.E1970Rfs*3 0.24 TCGA-PK-A5HB-01 2 207635989 207635989 C T FASTKD2 Missense_Mutation p.P322L 0.38 deleterious(0) possibly_damaging(0.817) TCGA-PK-A5HB-01 2 208725974 208725974 T C PLEKHM3 Missense_Mutation p.K655E 0.40 tolerated(0.13) probably_damaging(0.955) TCGA-PK-A5HB-01 2 208986447 208986447 C - CRYGD Frame_Shift_Del p.A159Pfs*9 0.28 TCGA-PK-A5HB-01 2 21233246 21233246 A T APOB Missense_Mutation p.I2165N 0.39 possibly_damaging(0.832) TCGA-PK-A5HB-01 2 212589889 212589889 T C ERBB4 Missense_Mutation p.D218G 0.39 tolerated(0.15) benign(0.054) TCGA-PK-A5HB-01 2 216244003 216244003 G A FN1 Silent p.V1824V 0.48 TCGA-PK-A5HB-01 2 218686598 218686598 G C TNS1 Missense_Mutation p.S1042C 0.41 tolerated(0.09) benign(0.195) TCGA-PK-A5HB-01 2 219146728 219146728 C T TMBIM1 Missense_Mutation p.G46D 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-PK-A5HB-01 2 219251383 219251383 C A SLC11A1 Missense_Mutation p.T140N 0.53 deleterious(0.02) benign(0.022) TCGA-PK-A5HB-01 2 219826262 219826263 - T CDK5R2 3'UTR 0.30 TCGA-PK-A5HB-01 2 219895931 219895932 - T CCDC108 Frame_Shift_Ins p.V305Gfs*91 0.32 TCGA-PK-A5HB-01 2 220101239 220101239 C T ANKZF1 3'UTR 0.39 TCGA-PK-A5HB-01 2 223423173 223423173 T C SGPP2 Silent p.C252C 0.45 TCGA-PK-A5HB-01 2 225652093 225652093 A G DOCK10 Missense_Mutation p.Y1814H 0.34 deleterious(0) benign(0.243) TCGA-PK-A5HB-01 2 233651868 233651868 A C GIGYF2 Missense_Mutation p.N203H 0.49 probably_damaging(0.998) TCGA-PK-A5HB-01 2 234091058 234091058 A G INPP5D Missense_Mutation p.S680G 0.46 deleterious(0) benign(0.138) TCGA-PK-A5HB-01 2 234854560 234854560 G A TRPM8 Missense_Mutation p.D254N 0.45 deleterious(0.02) possibly_damaging(0.606) TCGA-PK-A5HB-01 2 238672429 238672431 TGG - LRRFIP1 In_Frame_Del p.G693del 0.38 TCGA-PK-A5HB-01 2 238990850 238990850 G T SCLY Missense_Mutation p.K267N 0.38 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 2 240085574 240085574 A T HDAC4 Missense_Mutation p.V179D 0.37 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 2 241463346 241463346 G A ANKMY1 Silent p.S507S 0.47 TCGA-PK-A5HB-01 2 241516387 241516387 C T RNPEPL1 Missense_Mutation p.R391W 0.39 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 2 241569558 241569558 G A GPR35 Silent p.A94A 0.49 TCGA-PK-A5HB-01 2 241570321 241570321 G A GPR35 3'UTR 0.50 TCGA-PK-A5HB-01 2 241737134 241737134 G A KIF1A Silent p.V12V 0.42 TCGA-PK-A5HB-01 2 242407552 242407552 C T FARP2 Intron 0.44 TCGA-PK-A5HB-01 2 242573029 242573029 G A THAP4 Silent p.T181T 0.42 TCGA-PK-A5HB-01 2 24929918 24929918 A G NCOA1 Missense_Mutation p.N527D 0.49 tolerated(0.24) benign(0.034) TCGA-PK-A5HB-01 2 25013384 25013384 G A PTRHD1 Silent p.L107L 0.54 TCGA-PK-A5HB-01 2 26707488 26707488 A T OTOF Missense_Mutation p.H353Q 0.42 tolerated(0.15) possibly_damaging(0.74) TCGA-PK-A5HB-01 2 27121385 27121385 C T DPYSL5 Silent p.A6A 0.46 TCGA-PK-A5HB-01 2 27423099 27423099 G A SLC5A6 3'UTR 0.67 TCGA-PK-A5HB-01 2 27428302 27428302 A T SLC5A6 Missense_Mutation p.V217D 0.38 deleterious(0) probably_damaging(0.991) TCGA-PK-A5HB-01 2 27455435 27455435 G - CAD Frame_Shift_Del p.G923Afs*14 0.29 TCGA-PK-A5HB-01 2 28719029 28719029 G - PLB1 Frame_Shift_Del p.Q18Kfs*24 0.36 TCGA-PK-A5HB-01 2 31409307 31409307 C G CAPN14 Missense_Mutation p.Q544H 0.45 tolerated(0.56) benign(0) TCGA-PK-A5HB-01 2 3193197 3193197 C T TSSC1 Missense_Mutation p.A358T 0.47 deleterious(0) probably_damaging(0.989) TCGA-PK-A5HB-01 2 32417996 32417996 C T SLC30A6 Silent p.R165R 0.39 TCGA-PK-A5HB-01 2 33952146 33952146 C T AC009499.1 Intron 0.41 TCGA-PK-A5HB-01 2 36740805 36740805 C T CRIM1 Silent p.C629C 0.42 TCGA-PK-A5HB-01 2 37096725 37096725 T A STRN Missense_Mutation p.N491Y 0.48 deleterious(0) probably_damaging(0.987) TCGA-PK-A5HB-01 2 44047175 44047175 G - ABCG5 Frame_Shift_Del p.H510Tfs*2 0.33 TCGA-PK-A5HB-01 2 46739273 46739273 G A ATP6V1E2 Missense_Mutation p.S193L 0.34 deleterious(0.04) benign(0.291) TCGA-PK-A5HB-01 2 54152700 54152700 G A PSME4 Silent p.T595T 0.49 TCGA-PK-A5HB-01 2 62067294 62067294 A G FAM161A Missense_Mutation p.F282S 0.50 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 2 64780103 64780103 G T AFTPH Missense_Mutation p.D499Y 0.40 deleterious(0) possibly_damaging(0.694) TCGA-PK-A5HB-01 2 68368892 68368892 C T WDR92 Missense_Mutation p.D151N 0.06 tolerated(0.42) benign(0) TCGA-PK-A5HB-01 2 69746290 69746290 A G AAK1 Silent p.T431T 0.44 TCGA-PK-A5HB-01 2 7180047 7180047 T A RNF144A 3'UTR 0.47 TCGA-PK-A5HB-01 2 72742236 72742236 T A EXOC6B Missense_Mutation p.E312V 0.53 deleterious(0.02) probably_damaging(0.994) TCGA-PK-A5HB-01 2 73518917 73518917 C T EGR4 Missense_Mutation p.A480T 0.48 tolerated(0.07) benign(0.024) TCGA-PK-A5HB-01 2 73717935 73717935 C A ALMS1 Missense_Mutation p.P2949H 0.50 probably_damaging(0.952) TCGA-PK-A5HB-01 2 74699163 74699163 G A MRPL53 3'UTR 0.52 TCGA-PK-A5HB-01 2 74709403 74709403 C T CCDC142 Missense_Mutation p.A188T 0.46 tolerated(0.08) benign(0.016) TCGA-PK-A5HB-01 2 74720124 74720124 G A TTC31 Missense_Mutation p.A447T 0.43 tolerated(0.05) benign(0.001) TCGA-PK-A5HB-01 2 75104357 75104357 G A HK2 Missense_Mutation p.A314T 0.47 tolerated(0.46) benign(0.173) TCGA-PK-A5HB-01 2 84771614 84771614 T G DNAH6 Missense_Mutation p.I307S 0.57 deleterious(0) benign(0.146) TCGA-PK-A5HB-01 2 86371958 86371958 C T IMMT Nonsense_Mutation p.W570* 0.47 TCGA-PK-A5HB-01 2 86711133 86711133 T A KDM3A Missense_Mutation p.H982Q 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-PK-A5HB-01 2 90153995 90153995 C A IGKV3D-15 Missense_Mutation p.P28T 0.39 deleterious(0.01) possibly_damaging(0.464) TCGA-PK-A5HB-01 2 96971198 96971198 C T SNRNP200 5'UTR 0.46 TCGA-PK-A5HB-01 2 97519168 97519168 C T ANKRD39 Silent p.V126V 0.44 TCGA-PK-A5HB-01 2 98340777 98340777 G A ZAP70 Missense_Mutation p.G93E 0.50 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 2 98928932 98928932 C T VWA3B 3'UTR 0.44 TCGA-PK-A5HB-01 3 100508327 100508327 C T ABI3BP Missense_Mutation p.R667K 0.94 tolerated(0.62) possibly_damaging(0.745) TCGA-PK-A5HB-01 3 115529261 115529261 C T LSAMP Missense_Mutation p.R307K 0.81 tolerated(0.94) benign(0.001) TCGA-PK-A5HB-01 3 123675485 123675485 T C CCDC14 Intron 0.82 TCGA-PK-A5HB-01 3 125298757 125298757 G A OSBPL11 Missense_Mutation p.H121Y 0.74 tolerated(0.15) probably_damaging(1) TCGA-PK-A5HB-01 3 128853775 128853775 T A ISY1 Silent p.T169T 0.70 TCGA-PK-A5HB-01 3 129546844 129546844 G T TMCC1 Silent p.G126G 0.70 TCGA-PK-A5HB-01 3 130720162 130720162 A C ATP2C1 Intron 0.74 TCGA-PK-A5HB-01 3 132179933 132179933 G A DNAJC13 Missense_Mutation p.D533N 0.79 tolerated(0.08) benign(0.443) TCGA-PK-A5HB-01 3 133467410 133467410 T A TF Missense_Mutation p.D66E 0.77 tolerated(1) benign(0.009) TCGA-PK-A5HB-01 3 13679488 13679488 C T FBLN2 3'UTR 0.74 TCGA-PK-A5HB-01 3 150127417 150127417 C A TSC22D2 Missense_Mutation p.L94M 0.81 deleterious(0.02) possibly_damaging(0.665) TCGA-PK-A5HB-01 3 15563225 15563225 T C COLQ 5'UTR 0.89 TCGA-PK-A5HB-01 3 16475383 16475383 C T RFTN1 Missense_Mutation p.A103T 0.80 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 3 164905717 164905717 C T SLITRK3 Missense_Mutation p.E968K 0.76 deleterious(0) possibly_damaging(0.566) TCGA-PK-A5HB-01 3 167414893 167414893 G C PDCD10 Missense_Mutation p.L58V 0.64 deleterious(0.04) possibly_damaging(0.767) TCGA-PK-A5HB-01 3 169514632 169514632 G A LRRC34 Missense_Mutation p.A270V 0.77 deleterious(0.02) benign(0.008) TCGA-PK-A5HB-01 3 172165571 172165571 C A GHSR Silent p.T211T 0.79 TCGA-PK-A5HB-01 3 175165096 175165096 G T NAALADL2 Silent p.L390L 0.81 TCGA-PK-A5HB-01 3 182538053 182538053 T C ATP11B Silent p.F11F 0.80 TCGA-PK-A5HB-01 3 183953046 183953046 G A VWA5B2 Missense_Mutation p.A351T 0.70 tolerated(0.08) benign(0.014) TCGA-PK-A5HB-01 3 183957477 183957477 G A VWA5B2 Missense_Mutation p.G798E 0.83 tolerated(0.07) benign(0.014) TCGA-PK-A5HB-01 3 183962454 183962454 G A ALG3 Missense_Mutation p.L221F 0.70 tolerated(0.14) probably_damaging(0.993) TCGA-PK-A5HB-01 3 184049834 184049834 C T EIF4G1 Silent p.Y1533Y 0.05 TCGA-PK-A5HB-01 3 184083008 184083008 C T POLR2H Missense_Mutation p.P82L 0.75 tolerated(0.1) benign(0.198) TCGA-PK-A5HB-01 3 184429738 184429738 C T MAGEF1 5'UTR 0.74 TCGA-PK-A5HB-01 3 192053209 192053209 G A FGF12 Nonsense_Mutation p.Q119* 0.82 TCGA-PK-A5HB-01 3 195511828 195511828 G - MUC4 Frame_Shift_Del p.P2208Lfs*796 0.13 TCGA-PK-A5HB-01 3 27244004 27244004 A G NEK10 Missense_Mutation p.V712A 0.80 deleterious(0) possibly_damaging(0.695) TCGA-PK-A5HB-01 3 29941226 29941226 C T RBMS3 Missense_Mutation p.P307S 0.62 tolerated(1) benign(0.009) TCGA-PK-A5HB-01 3 30903251 30903251 A T GADL1 Missense_Mutation p.I15N 0.72 tolerated_low_confidence(0.51) benign(0) TCGA-PK-A5HB-01 3 32032771 32032771 C T ZNF860 3'UTR 0.87 TCGA-PK-A5HB-01 3 32398985 32398985 A T CMTM8 Missense_Mutation p.I90F 0.72 tolerated(0.05) benign(0.182) TCGA-PK-A5HB-01 3 33419633 33419633 C T FBXL2 Silent p.C296C 0.75 TCGA-PK-A5HB-01 3 33883509 33883509 T G PDCD6IP Missense_Mutation p.D439E 0.75 tolerated(0.96) benign(0.003) TCGA-PK-A5HB-01 3 37083763 37083763 G T MLH1 Nonsense_Mutation p.E558* 0.74 TCGA-PK-A5HB-01 3 38035716 38035716 C T VILL Intron 0.60 TCGA-PK-A5HB-01 3 38921457 38921457 T A SCN11A Missense_Mutation p.D1126V 0.63 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 3 41759264 41759264 T C ULK4 Missense_Mutation p.D804G 0.80 deleterious(0.03) benign(0.001) TCGA-PK-A5HB-01 3 42738492 42738492 C T HHATL Splice_Site p.X337_splice 0.82 TCGA-PK-A5HB-01 3 44803069 44803069 T C KIAA1143 Missense_Mutation p.Y9C 0.85 tolerated(0.09) probably_damaging(0.972) TCGA-PK-A5HB-01 3 45942503 45942503 T C CCR9 Missense_Mutation p.Y75H 0.73 tolerated(0.47) benign(0.133) TCGA-PK-A5HB-01 3 47041809 47041809 C A NBEAL2 Missense_Mutation p.S1407Y 0.77 deleterious(0) probably_damaging(0.984) TCGA-PK-A5HB-01 3 47378243 47378243 A G KLHL18 Missense_Mutation p.R373G 0.76 deleterious(0) possibly_damaging(0.711) TCGA-PK-A5HB-01 3 47458817 47458817 C A SCAP Missense_Mutation p.G983W 0.78 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 3 48414208 48414208 G A FBXW12 5'UTR 0.80 TCGA-PK-A5HB-01 3 49846424 49846424 C G UBA7 Missense_Mutation p.A778P 0.80 tolerated(0.11) benign(0.071) TCGA-PK-A5HB-01 3 51432312 51432312 G A RBM15B 3'UTR 0.71 TCGA-PK-A5HB-01 3 51968549 51968549 A G RRP9 Missense_Mutation p.V400A 0.75 deleterious(0) benign(0.41) TCGA-PK-A5HB-01 3 52084824 52084824 C T DUSP7 3'UTR 0.78 TCGA-PK-A5HB-01 3 52085041 52085041 C T DUSP7 Missense_Mutation p.M350I 0.78 tolerated(0.07) benign(0.02) TCGA-PK-A5HB-01 3 52088244 52088244 C TT DUSP7 Frame_Shift_Ins p.D222Kfs*79 0.44 TCGA-PK-A5HB-01 3 52437564 52437565 - A BAP1 Frame_Shift_Ins p.G533Wfs*4 0.50 TCGA-PK-A5HB-01 3 52438537 52438537 G A BAP1 Silent p.Y394Y 0.80 TCGA-PK-A5HB-01 3 52457218 52457218 C G PHF7 Missense_Mutation p.T344S 0.80 tolerated_low_confidence(0.15) benign(0.004) TCGA-PK-A5HB-01 3 52543970 52543970 G A STAB1 Missense_Mutation p.S811N 0.81 deleterious(0.04) benign(0.097) TCGA-PK-A5HB-01 3 57616494 57616494 T A DENND6A Missense_Mutation p.T489S 0.72 tolerated(0.48) benign(0.033) TCGA-PK-A5HB-01 3 58255106 58255106 C T ABHD6 Missense_Mutation p.T112I 0.79 deleterious(0) possibly_damaging(0.89) TCGA-PK-A5HB-01 3 62248700 62248700 A G PTPRG Intron 0.70 TCGA-PK-A5HB-01 3 63985303 63985303 T A ATXN7 3'UTR 0.52 TCGA-PK-A5HB-01 3 74548830 74548830 G A CNTN3 Silent p.G54G 0.88 TCGA-PK-A5HB-01 3 77147394 77147394 C T ROBO2 Silent p.H113H 0.83 TCGA-PK-A5HB-01 3 81635291 81635291 A G GBE1 Silent p.G429G 0.82 TCGA-PK-A5HB-01 3 9488930 9488930 T A SETD5 Missense_Mutation p.V574D 0.93 tolerated(0.51) benign(0.013) TCGA-PK-A5HB-01 4 100349715 100349715 T A ADH7 Missense_Mutation p.I85F 0.39 deleterious(0) benign(0.017) TCGA-PK-A5HB-01 4 104066472 104066472 T C CENPE Missense_Mutation p.K1531R 0.42 possibly_damaging(0.591) TCGA-PK-A5HB-01 4 106196337 106196337 T A TET2 Missense_Mutation p.V1557D 0.42 deleterious(0.02) possibly_damaging(0.702) TCGA-PK-A5HB-01 4 110460806 110460806 A G SEC24B Missense_Mutation p.H1261R 0.51 deleterious(0.03) possibly_damaging(0.795) TCGA-PK-A5HB-01 4 111539802 111539802 G A PITX2 Missense_Mutation p.R152C 0.46 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 4 113484389 113484389 C G C4orf21 Missense_Mutation p.D1494H 0.43 deleterious(0) probably_damaging(0.994) TCGA-PK-A5HB-01 4 1164348 1164348 G A SPON2 Missense_Mutation p.P218L 0.40 deleterious(0) probably_damaging(0.997) TCGA-PK-A5HB-01 4 121616316 121616316 C T PRDM5 Missense_Mutation p.D615N 0.69 tolerated(0.17) probably_damaging(0.991) TCGA-PK-A5HB-01 4 126373258 126373258 A G FAT4 Missense_Mutation p.N3696S 0.81 benign(0.001) TCGA-PK-A5HB-01 4 134071935 134071935 G A PCDH10 Missense_Mutation p.E214K 0.80 tolerated_low_confidence(0.6) benign(0.013) TCGA-PK-A5HB-01 4 140811799 140811799 T A MAML3 Missense_Mutation p.D264V 0.62 possibly_damaging(0.588) TCGA-PK-A5HB-01 4 149041326 149041326 A G NR3C2 Missense_Mutation p.L875S 0.73 deleterious(0) probably_damaging(0.995) TCGA-PK-A5HB-01 4 154624389 154624392 TTAC - TLR2 Frame_Shift_Del p.S113Ifs*13 0.69 TCGA-PK-A5HB-01 4 156638325 156638325 C T GUCY1A3 Silent p.G529G 0.75 TCGA-PK-A5HB-01 4 15850342 15850342 T A CD38 3'UTR 0.40 TCGA-PK-A5HB-01 4 159092094 159092094 A G FAM198B Missense_Mutation p.L145S 0.78 tolerated(0.36) possibly_damaging(0.765) TCGA-PK-A5HB-01 4 164271440 164271440 C T NPY5R Silent p.L5L 0.69 TCGA-PK-A5HB-01 4 178358622 178358622 T C AGA Missense_Mutation p.I187V 0.79 tolerated(0.81) benign(0.004) TCGA-PK-A5HB-01 4 187532668 187532668 T C FAT1 Missense_Mutation p.D3242G 0.80 probably_damaging(0.984) TCGA-PK-A5HB-01 4 1989663 1989663 G A NELFA Missense_Mutation p.R217W 0.57 deleterious(0) probably_damaging(0.996) TCGA-PK-A5HB-01 4 20731736 20731736 C T KCNIP4 Missense_Mutation p.R241H 0.40 tolerated(0.08) benign(0.003) TCGA-PK-A5HB-01 4 25162013 25162013 G A SEPSECS 5'UTR 0.39 TCGA-PK-A5HB-01 4 2733699 2733699 G A FAM193A 3'UTR 0.39 TCGA-PK-A5HB-01 4 2948138 2948138 C A NOP14 Splice_Site p.X545_splice 0.56 TCGA-PK-A5HB-01 4 3137678 3137678 C T HTT Missense_Mutation p.A894V 0.28 benign(0.001) TCGA-PK-A5HB-01 4 3240681 3240681 C T HTT Missense_Mutation p.S3064F 0.45 possibly_damaging(0.895) TCGA-PK-A5HB-01 4 36214032 36214032 A G ARAP2 Silent p.F373F 0.36 TCGA-PK-A5HB-01 4 3768889 3768889 C T ADRA2C Missense_Mutation p.P186S 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-PK-A5HB-01 4 38119794 38119794 A T TBC1D1 Silent p.G981G 0.40 TCGA-PK-A5HB-01 4 39466916 39466916 G - LIAS Frame_Shift_Del p.G189Efs*12 0.29 TCGA-PK-A5HB-01 4 39868540 39868540 A G PDS5A Silent p.L861L 0.37 TCGA-PK-A5HB-01 4 40339332 40339332 A C CHRNA9 Silent p.R106R 0.41 TCGA-PK-A5HB-01 4 527709 527709 T C PIGG Missense_Mutation p.Y892H 0.35 deleterious(0) probably_damaging(0.966) TCGA-PK-A5HB-01 4 55153648 55153648 T G PDGFRA Missense_Mutation p.Y872D 0.47 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 4 57357651 57357651 G T SRP72 Missense_Mutation p.E519D 0.36 tolerated(1) benign(0.001) TCGA-PK-A5HB-01 4 57907052 57907052 C T IGFBP7 Missense_Mutation p.A175T 0.43 deleterious(0.03) probably_damaging(0.91) TCGA-PK-A5HB-01 4 68380317 68380317 C A CENPC Nonsense_Mutation p.E307* 0.37 TCGA-PK-A5HB-01 4 68530972 68530972 C T UBA6 Missense_Mutation p.E278K 0.38 tolerated(0.69) benign(0) TCGA-PK-A5HB-01 4 69343139 69343139 T C TMPRSS11E Missense_Mutation p.S254P 0.47 tolerated(1) benign(0.001) TCGA-PK-A5HB-01 4 69682216 69682216 C T UGT2B10 Missense_Mutation p.A160V 0.44 deleterious(0.02) possibly_damaging(0.562) TCGA-PK-A5HB-01 4 71068483 71068483 A G ODAM Missense_Mutation p.E220G 0.40 tolerated(1) benign(0.001) TCGA-PK-A5HB-01 4 71201374 71201374 G T CABS1 Missense_Mutation p.Q206H 0.46 tolerated(0.15) benign(0.001) TCGA-PK-A5HB-01 4 73148985 73148985 T C ADAMTS3 Silent p.S1162S 0.37 TCGA-PK-A5HB-01 4 73941783 73941783 A G ANKRD17 3'UTR 0.45 TCGA-PK-A5HB-01 4 74303978 74303978 G A AFP Silent p.E75E 0.34 TCGA-PK-A5HB-01 4 75041061 75041061 C G MTHFD2L Missense_Mutation p.T131S 0.45 deleterious(0.03) possibly_damaging(0.601) TCGA-PK-A5HB-01 4 76407664 76407664 A T RCHY1 3'UTR 0.45 TCGA-PK-A5HB-01 4 77177441 77177441 G A FAM47E Missense_Mutation p.C62Y 0.39 tolerated(0.11) benign(0.077) TCGA-PK-A5HB-01 4 77692038 77692038 G A SHROOM3 Missense_Mutation p.S1870N 0.42 tolerated(0.58) benign(0.267) TCGA-PK-A5HB-01 4 79258865 79258865 G C FRAS1 Missense_Mutation p.L772F 0.40 benign(0.304) TCGA-PK-A5HB-01 4 79832494 79832494 A T BMP2K Silent p.V931V 0.37 TCGA-PK-A5HB-01 4 87643506 87643506 C T PTPN13 Silent p.I509I 0.43 TCGA-PK-A5HB-01 4 87643549 87643549 A G PTPN13 Missense_Mutation p.I524V 0.39 tolerated(0.46) benign(0.09) TCGA-PK-A5HB-01 4 89679992 89679992 G A FAM13A Nonsense_Mutation p.Q547* 0.40 TCGA-PK-A5HB-01 4 94436526 94436526 G A GRID2 Silent p.E719E 0.35 TCGA-PK-A5HB-01 4 94547465 94547465 G A GRID2 Missense_Mutation p.E747K 0.41 deleterious(0) probably_damaging(0.996) TCGA-PK-A5HB-01 4 95496845 95496845 G A PDLIM5 Intron 0.41 TCGA-PK-A5HB-01 4 9785283 9785283 G A DRD5 3'UTR 0.44 TCGA-PK-A5HB-01 4 996231 996231 C T IDUA Missense_Mutation p.R383C 0.50 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 4 99850270 99850270 T A EIF4E 5'UTR 0.44 TCGA-PK-A5HB-01 5 101631819 101631819 G A SLCO4C1 Nonsense_Mutation p.Q50* 0.41 TCGA-PK-A5HB-01 5 1064007 1064007 C A SLC12A7 Missense_Mutation p.M897I 0.45 tolerated(0.11) benign(0.027) TCGA-PK-A5HB-01 5 112178919 112178919 G A APC Missense_Mutation p.R2543K 0.42 probably_damaging(0.997) TCGA-PK-A5HB-01 5 112203299 112203299 A T SRP19 3'UTR 0.33 TCGA-PK-A5HB-01 5 112228351 112228351 A C ZRSR1 Missense_Mutation p.N339H 0.43 deleterious(0) probably_damaging(0.995) TCGA-PK-A5HB-01 5 115320392 115320392 G A AQPEP Missense_Mutation p.E322K 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-PK-A5HB-01 5 115782363 115782363 T C SEMA6A Silent p.K1013K 0.49 TCGA-PK-A5HB-01 5 115815886 115815886 C T SEMA6A Silent p.T394T 0.43 TCGA-PK-A5HB-01 5 118970154 118970154 C T FAM170A Silent p.F237F 0.42 TCGA-PK-A5HB-01 5 123976977 123976977 G A ZNF608 Missense_Mutation p.P1473L 0.47 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 5 127493843 127493843 G A SLC12A2 Missense_Mutation p.G821D 0.50 deleterious(0) possibly_damaging(0.796) TCGA-PK-A5HB-01 5 130766961 130766961 A T RAPGEF6 Missense_Mutation p.H1360Q 0.48 tolerated_low_confidence(0.97) possibly_damaging(0.862) TCGA-PK-A5HB-01 5 132197219 132197219 C T GDF9 3'UTR 0.39 TCGA-PK-A5HB-01 5 134296370 134296370 G A PCBD2 Silent p.%3D 0.47 TCGA-PK-A5HB-01 5 134296467 134296467 T - PCBD2 Intron 0.35 TCGA-PK-A5HB-01 5 135396593 135396593 T C TGFBI Missense_Mutation p.V625A 0.40 deleterious(0) possibly_damaging(0.669) TCGA-PK-A5HB-01 5 135587359 135587359 C T TRPC7 Silent p.P519P 0.45 TCGA-PK-A5HB-01 5 13701414 13701414 T C DNAH5 Silent p.G4490G 0.45 TCGA-PK-A5HB-01 5 137722268 137722268 G A KDM3B Silent p.V446V 0.45 TCGA-PK-A5HB-01 5 137801409 137801409 C - EGR1 5'UTR 0.38 TCGA-PK-A5HB-01 5 13809182 13809182 G A DNAH5 Silent p.L2575L 0.43 TCGA-PK-A5HB-01 5 138728085 138728085 C T PROB1 Missense_Mutation p.A896T 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-PK-A5HB-01 5 13944571 13944571 G C DNAH5 5'UTR 0.38 TCGA-PK-A5HB-01 5 139938051 139938051 G T APBB3 3'UTR 0.31 TCGA-PK-A5HB-01 5 140215497 140215497 T C PCDHA7 Missense_Mutation p.V510A 0.44 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-PK-A5HB-01 5 140222523 140222523 C T PCDHA8 Silent p.D539D 0.45 TCGA-PK-A5HB-01 5 140475545 140475545 C T PCDHB2 Missense_Mutation p.L391F 0.47 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-PK-A5HB-01 5 140516394 140516394 C T PCDHB5 Nonsense_Mutation p.R460* 0.42 TCGA-PK-A5HB-01 5 140531452 140531452 G A PCDHB6 Silent p.A538A 0.44 TCGA-PK-A5HB-01 5 140554289 140554289 C T PCDHB7 Missense_Mutation p.R625C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-PK-A5HB-01 5 140554919 140554919 A T PCDHB7 3'UTR 0.23 TCGA-PK-A5HB-01 5 140555550 140555550 C T PCDHB7 3'UTR 0.18 TCGA-PK-A5HB-01 5 140615479 140615479 C T PCDHB18 RNA 0.43 TCGA-PK-A5HB-01 5 140724077 140724077 C T PCDHGA3 Silent p.D159D 0.41 TCGA-PK-A5HB-01 5 140789294 140789294 G A PCDHGB6 Missense_Mutation p.A509T 0.42 deleterious(0.04) possibly_damaging(0.523) TCGA-PK-A5HB-01 5 142662181 142662181 G A NR3C1 Silent p.N712N 0.31 TCGA-PK-A5HB-01 5 145246099 145246099 C T GRXCR2 Missense_Mutation p.A177T 0.19 tolerated(0.6) benign(0.001) TCGA-PK-A5HB-01 5 145634509 145634509 C A RBM27 Missense_Mutation p.T483K 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-PK-A5HB-01 5 145647328 145647328 A C RBM27 Missense_Mutation p.K816N 0.42 deleterious(0) probably_damaging(0.991) TCGA-PK-A5HB-01 5 145834680 145834680 C T TCERG1 Nonsense_Mutation p.R41* 0.46 TCGA-PK-A5HB-01 5 145849290 145849290 A G TCERG1 Missense_Mutation p.Q461R 0.29 tolerated(0.09) unknown(0) TCGA-PK-A5HB-01 5 147805102 147805102 C T FBXO38 Missense_Mutation p.R586C 0.48 tolerated_low_confidence(0.08) probably_damaging(0.995) TCGA-PK-A5HB-01 5 149510124 149510124 A G PDGFRB Missense_Mutation p.S449P 0.46 tolerated(0.11) benign(0.195) TCGA-PK-A5HB-01 5 153760166 153760166 A - GALNT10 Frame_Shift_Del p.A306Lfs*11 0.35 TCGA-PK-A5HB-01 5 154173383 154173383 C - LARP1 Frame_Shift_Del p.V222Wfs*27 0.08 TCGA-PK-A5HB-01 5 154254927 154254927 G A CNOT8 Silent p.K269K 0.40 TCGA-PK-A5HB-01 5 158140042 158140042 G A EBF1 Silent p.G435G 0.39 TCGA-PK-A5HB-01 5 166711961 166711961 A G TENM2 Missense_Mutation p.Y40C 0.41 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-PK-A5HB-01 5 16711035 16711035 C T MYO10 Nonsense_Mutation p.W717* 0.35 TCGA-PK-A5HB-01 5 167617506 167617506 A T TENM2 Nonsense_Mutation p.K912* 0.40 TCGA-PK-A5HB-01 5 168201335 168201335 C T SLIT3 Silent p.Q400Q 0.38 TCGA-PK-A5HB-01 5 170737206 170737206 C T TLX3 Silent p.Y158Y 0.42 TCGA-PK-A5HB-01 5 171661284 171661284 A G UBTD2 Missense_Mutation p.L50P 0.45 deleterious(0) probably_damaging(0.947) TCGA-PK-A5HB-01 5 174152037 174152037 G A MSX2 Silent p.P125P 0.47 TCGA-PK-A5HB-01 5 175824632 175824632 A G CLTB Missense_Mutation p.V147A 0.51 deleterious(0.03) benign(0.022) TCGA-PK-A5HB-01 5 177649506 177649506 G T PHYKPL Missense_Mutation p.F259L 0.45 deleterious(0) possibly_damaging(0.521) TCGA-PK-A5HB-01 5 178392351 178392351 A G ZNF454 Missense_Mutation p.T316A 0.39 tolerated(0.41) possibly_damaging(0.775) TCGA-PK-A5HB-01 5 178507040 178507040 G A ZNF354C Missense_Mutation p.S536N 0.44 tolerated(0.4) benign(0.004) TCGA-PK-A5HB-01 5 180582175 180582175 A C OR2V2 Missense_Mutation p.N78T 0.37 tolerated(1) benign(0.04) TCGA-PK-A5HB-01 5 236583 236583 G A SDHA Missense_Mutation p.G434D 0.43 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-PK-A5HB-01 5 32355934 32355934 C T ZFR Missense_Mutation p.D1053N 0.36 tolerated(0.09) unknown(0) TCGA-PK-A5HB-01 5 33881505 33881505 C T ADAMTS12 Missense_Mutation p.G70S 0.45 tolerated(0.5) benign(0.024) TCGA-PK-A5HB-01 5 33947122 33947122 C A SLC45A2 Intron 0.69 TCGA-PK-A5HB-01 5 34915889 34915889 G A BRIX1 Missense_Mutation p.A16T 0.38 tolerated_low_confidence(0.39) benign(0.002) TCGA-PK-A5HB-01 5 36677261 36677261 A G SLC1A3 Missense_Mutation p.M279V 0.47 deleterious(0) possibly_damaging(0.728) TCGA-PK-A5HB-01 5 36953863 36953863 G A NIPBL Splice_Site p.X22_splice 0.41 TCGA-PK-A5HB-01 5 41000914 41000914 T C MROH2B Missense_Mutation p.T1406A 0.39 tolerated(0.6) benign(0.012) TCGA-PK-A5HB-01 5 41739509 41739509 T C OXCT1 Missense_Mutation p.T502A 0.40 deleterious(0) possibly_damaging(0.886) TCGA-PK-A5HB-01 5 43539100 43539100 T C PAIP1 Missense_Mutation p.K258E 0.47 tolerated(0.05) possibly_damaging(0.829) TCGA-PK-A5HB-01 5 43556100 43556100 C T PAIP1 Silent p.E89E 0.34 TCGA-PK-A5HB-01 5 43619202 43619203 - A NNT Frame_Shift_Ins p.V225Sfs*5 0.29 TCGA-PK-A5HB-01 5 54468918 54468918 A G CDC20B 5'UTR 0.54 TCGA-PK-A5HB-01 5 56207218 56207218 A G SETD9 Silent p.Q107Q 0.41 TCGA-PK-A5HB-01 5 56234785 56234785 T A MIER3 Silent p.P80P 0.33 TCGA-PK-A5HB-01 5 65058794 65058794 G A NLN Silent p.R103R 0.43 TCGA-PK-A5HB-01 5 68412226 68412226 A G SLC30A5 Missense_Mutation p.N360D 0.43 tolerated(0.25) benign(0.005) TCGA-PK-A5HB-01 5 70247769 70247769 G A SMN1 Missense_Mutation p.G279D 0.39 deleterious(0) probably_damaging(0.989) TCGA-PK-A5HB-01 5 74326227 74326227 C T GCNT4 5'UTR 0.42 TCGA-PK-A5HB-01 5 74869656 74869656 C T POLK Missense_Mutation p.P168S 0.49 deleterious(0.03) possibly_damaging(0.532) TCGA-PK-A5HB-01 5 75896750 75896750 A C IQGAP2 Missense_Mutation p.R395S 0.47 tolerated(0.85) benign(0.007) TCGA-PK-A5HB-01 5 82816109 82816109 A G VCAN Missense_Mutation p.K662E 0.39 tolerated(0.1) benign(0.015) TCGA-PK-A5HB-01 5 89703515 89703515 C T CETN3 Splice_Site p.X51_splice 0.40 TCGA-PK-A5HB-01 5 89990218 89990218 A G GPR98 Missense_Mutation p.N2549D 0.46 possibly_damaging(0.899) TCGA-PK-A5HB-01 5 92923842 92923842 T C NR2F1 Missense_Mutation p.F228S 0.41 deleterious(0) probably_damaging(0.97) TCGA-PK-A5HB-01 5 93807267 93807267 G A KIAA0825 Missense_Mutation p.A542V 0.43 deleterious(0.04) benign(0.27) TCGA-PK-A5HB-01 5 96117463 96117463 G C ERAP1 Missense_Mutation p.S794C 0.33 deleterious(0.03) benign(0.04) TCGA-PK-A5HB-01 5 96315242 96315242 C T LNPEP Silent p.G140G 0.41 TCGA-PK-A5HB-01 5 96315342 96315342 C T LNPEP Missense_Mutation p.P174S 0.48 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 6 107811894 107811894 G A SOBP Missense_Mutation p.R25K 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-PK-A5HB-01 6 109773753 109773753 C T MICAL1 Missense_Mutation p.V213I 0.35 deleterious(0.02) benign(0.251) TCGA-PK-A5HB-01 6 109798048 109798048 G A ZBTB24 Silent p.G346G 0.36 TCGA-PK-A5HB-01 6 110797794 110797794 G C SLC22A16 5'UTR 0.36 TCGA-PK-A5HB-01 6 111498898 111498898 A T SLC16A10 Intron 0.67 TCGA-PK-A5HB-01 6 112441533 112441534 - T LAMA4 Frame_Shift_Ins p.L1540Tfs*4 0.29 TCGA-PK-A5HB-01 6 114378976 114378976 T C HS3ST5 Silent p.T162T 0.51 TCGA-PK-A5HB-01 6 116579881 116579881 G C TSPYL4 5'Flank 0.32 TCGA-PK-A5HB-01 6 117665330 117665330 T C ROS1 Missense_Mutation p.T1473A 0.42 tolerated(0.53) benign(0.015) TCGA-PK-A5HB-01 6 121427246 121427246 A G TBC1D32 Missense_Mutation p.Y1130H 0.38 tolerated(0.37) benign(0.162) TCGA-PK-A5HB-01 6 126080476 126080476 A G HEY2 Missense_Mutation p.H181R 0.46 tolerated(0.57) probably_damaging(0.977) TCGA-PK-A5HB-01 6 126667370 126667370 T G CENPW Missense_Mutation p.L49R 0.48 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 6 128031127 128031127 T C THEMIS 3'UTR 0.61 TCGA-PK-A5HB-01 6 129204502 129204502 G C LAMA2 Missense_Mutation p.G38R 0.43 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 6 12933981 12933981 G T PHACTR1 Missense_Mutation p.A123S 0.45 unknown(0) TCGA-PK-A5HB-01 6 129950582 129950582 T A ARHGAP18 Silent p.V234V 0.50 TCGA-PK-A5HB-01 6 132645213 132645213 T A MOXD1 Missense_Mutation p.R324W 0.32 deleterious(0) probably_damaging(0.994) TCGA-PK-A5HB-01 6 137329836 137329836 C T IL20RA Silent p.L208L 0.33 TCGA-PK-A5HB-01 6 139237076 139237076 G C REPS1 Missense_Mutation p.P546A 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-PK-A5HB-01 6 139488123 139488123 G A HECA Missense_Mutation p.S325N 0.40 tolerated(0.16) benign(0.15) TCGA-PK-A5HB-01 6 139498299 139498299 C T HECA 3'UTR 0.56 TCGA-PK-A5HB-01 6 143074762 143074762 G T HIVEP2 Missense_Mutation p.P2275T 0.49 deleterious(0.04) benign(0.271) TCGA-PK-A5HB-01 6 145160331 145160331 A G UTRN Missense_Mutation p.N3363S 0.32 tolerated(0.1) probably_damaging(0.995) TCGA-PK-A5HB-01 6 146214396 146214396 T C SHPRH Missense_Mutation p.H1610R 0.45 deleterious(0.01) possibly_damaging(0.634) TCGA-PK-A5HB-01 6 146248371 146248371 C T SHPRH Missense_Mutation p.R1052H 0.12 deleterious(0) possibly_damaging(0.573) TCGA-PK-A5HB-01 6 150326243 150326243 T C RAET1K RNA 0.31 TCGA-PK-A5HB-01 6 150343331 150343331 G T RAET1L Missense_Mutation p.P45H 0.27 tolerated(0.12) possibly_damaging(0.652) TCGA-PK-A5HB-01 6 151672050 151672050 G T AKAP12 Missense_Mutation p.D842Y 0.41 deleterious(0) probably_damaging(0.972) TCGA-PK-A5HB-01 6 151673402 151673402 A G AKAP12 Missense_Mutation p.I1292M 0.45 tolerated(0.26) benign(0.013) TCGA-PK-A5HB-01 6 154428974 154428974 G A OPRM1 Intron 0.46 TCGA-PK-A5HB-01 6 154732089 154732089 T A CNKSR3 Nonsense_Mutation p.R420* 0.37 TCGA-PK-A5HB-01 6 154732101 154732101 G A CNKSR3 Missense_Mutation p.P416S 0.39 tolerated(0.45) possibly_damaging(0.542) TCGA-PK-A5HB-01 6 159166688 159166688 T A SYTL3 Missense_Mutation p.N344K 0.36 deleterious(0.01) possibly_damaging(0.681) TCGA-PK-A5HB-01 6 160169514 160169514 A - WTAP Intron 0.43 TCGA-PK-A5HB-01 6 161006174 161006174 C T LPA Missense_Mutation p.G1398D 0.45 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 6 161510389 161510389 G A MAP3K4 Silent p.A953A 0.33 TCGA-PK-A5HB-01 6 163984721 163984721 G C QKI Missense_Mutation p.E302Q 0.46 tolerated(0.05) probably_damaging(0.993) TCGA-PK-A5HB-01 6 165703533 165703533 C T C6orf118 Missense_Mutation p.D382N 0.11 tolerated(0.1) benign(0.26) TCGA-PK-A5HB-01 6 167417212 167417212 T C FGFR1OP Silent p.G71G 0.42 TCGA-PK-A5HB-01 6 167549529 167549529 C G CCR6 5'UTR 0.47 TCGA-PK-A5HB-01 6 167549924 167549924 T A CCR6 Missense_Mutation p.I69N 0.39 deleterious(0) possibly_damaging(0.579) TCGA-PK-A5HB-01 6 167550007 167550007 C G CCR6 Missense_Mutation p.L97V 0.41 tolerated(0.16) benign(0.062) TCGA-PK-A5HB-01 6 169622343 169622343 C T THBS2 Silent p.T1074T 0.44 TCGA-PK-A5HB-01 6 169648601 169648601 C T THBS2 Missense_Mutation p.A174T 0.37 tolerated(0.56) benign(0) TCGA-PK-A5HB-01 6 170104448 170104448 A G C6orf120 3'UTR 0.33 TCGA-PK-A5HB-01 6 170846402 170846402 G A PSMB1 Missense_Mutation p.P154S 0.41 tolerated(0.06) probably_damaging(0.942) TCGA-PK-A5HB-01 6 170862286 170862286 C A PSMB1 Missense_Mutation p.L15F 0.41 tolerated(1) benign(0.044) TCGA-PK-A5HB-01 6 26509463 26509463 G T BTN1A1 3'UTR 0.61 TCGA-PK-A5HB-01 6 2836398 2836398 A G SERPINB1 Missense_Mutation p.W171R 0.38 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 6 31079664 31079664 C T C6orf15 Missense_Mutation p.D158N 0.43 tolerated(0.16) benign(0.074) TCGA-PK-A5HB-01 6 31112778 31112778 G A CCHCR1 Missense_Mutation p.S650F 0.37 deleterious(0.01) possibly_damaging(0.865) TCGA-PK-A5HB-01 6 31747403 31747403 G - VARS Frame_Shift_Del p.Y1091Tfs*22 0.38 TCGA-PK-A5HB-01 6 31994861 31994861 C T C4B Missense_Mutation p.R852W 0.69 deleterious(0) probably_damaging(0.932) TCGA-PK-A5HB-01 6 32008948 32008948 C T CYP21A2 3'UTR 0.16 TCGA-PK-A5HB-01 6 32012914 32012914 G A TNXB Missense_Mutation p.A28V 0.20 tolerated(0.16) probably_damaging(0.999) TCGA-PK-A5HB-01 6 32780942 32780942 G A HLA-DOB 3'UTR 0.43 TCGA-PK-A5HB-01 6 32782355 32782355 G A HLA-DOB Missense_Mutation p.P129S 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-PK-A5HB-01 6 32820954 32820954 A G TAP1 Missense_Mutation p.W214R 0.43 deleterious(0) possibly_damaging(0.907) TCGA-PK-A5HB-01 6 33283545 33283545 G T ZBTB22 Missense_Mutation p.D383E 0.49 tolerated(0.07) possibly_damaging(0.883) TCGA-PK-A5HB-01 6 33373046 33373046 G A KIFC1 Missense_Mutation p.A392T 0.44 deleterious(0.01) benign(0.392) TCGA-PK-A5HB-01 6 33385290 33385290 G A CUTA Silent p.C94C 0.49 TCGA-PK-A5HB-01 6 33385455 33385455 A G CUTA Silent p.S39S 0.38 TCGA-PK-A5HB-01 6 33545398 33545398 G A BAK1 5'UTR 0.35 TCGA-PK-A5HB-01 6 33657170 33657170 A T ITPR3 Missense_Mutation p.I2284F 0.41 tolerated(0.11) benign(0.063) TCGA-PK-A5HB-01 6 350756 350756 G C DUSP22 Intron 0.32 TCGA-PK-A5HB-01 6 38840860 38840860 G A DNAH8 Silent p.T2255T 0.39 TCGA-PK-A5HB-01 6 41060791 41060791 A G NFYA Silent p.L285L 0.39 TCGA-PK-A5HB-01 6 42236625 42236625 T C TRERF1 Missense_Mutation p.D235G 0.41 tolerated_low_confidence(0.08) possibly_damaging(0.766) TCGA-PK-A5HB-01 6 42610157 42610157 T A UBR2 Missense_Mutation p.Y679N 0.58 deleterious(0) possibly_damaging(0.495) TCGA-PK-A5HB-01 6 42797332 42797332 A G GLTSCR1L Missense_Mutation p.N421D 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-PK-A5HB-01 6 43592287 43592287 C T GTPBP2 Missense_Mutation p.D354N 0.51 deleterious(0.02) probably_damaging(1) TCGA-PK-A5HB-01 6 44223336 44223336 G A SLC35B2 Missense_Mutation p.R136C 0.39 deleterious(0.02) possibly_damaging(0.766) TCGA-PK-A5HB-01 6 46658119 46658119 A T TDRD6 Missense_Mutation p.M752L 0.33 tolerated(0.83) benign(0) TCGA-PK-A5HB-01 6 47680311 47680312 - T GPR115 Frame_Shift_Ins p.L174Ffs*3 0.20 TCGA-PK-A5HB-01 6 49518618 49518618 G A C6orf141 Missense_Mutation p.R38H 0.52 tolerated(0.17) probably_damaging(0.982) TCGA-PK-A5HB-01 6 51695744 51695744 A C PKHD1 Silent p.P2739P 0.37 TCGA-PK-A5HB-01 6 52615481 52615482 - T GSTA2 Frame_Shift_Ins p.I188Nfs*3 0.31 TCGA-PK-A5HB-01 6 53140004 53140004 G T ELOVL5 Missense_Mutation p.T154N 0.35 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 6 5369294 5369294 T C FARS2 Missense_Mutation p.L164P 0.42 deleterious(0) probably_damaging(0.995) TCGA-PK-A5HB-01 6 53883804 53883804 T C MLIP 5'UTR 0.47 TCGA-PK-A5HB-01 6 53883833 53883833 C T MLIP Missense_Mutation p.L3F 0.39 tolerated(0.36) benign(0.001) TCGA-PK-A5HB-01 6 55304258 55304258 T A HMGCLL1 Missense_Mutation p.M329L 0.45 tolerated(0.19) benign(0.106) TCGA-PK-A5HB-01 6 56371582 56371582 T C DST Missense_Mutation p.I3792M 0.44 possibly_damaging(0.459) TCGA-PK-A5HB-01 6 56481544 56481545 - T DST Intron 0.31 TCGA-PK-A5HB-01 6 71138076 71138076 T A FAM135A Missense_Mutation p.S11T 0.46 deleterious(0) probably_damaging(0.995) TCGA-PK-A5HB-01 6 72960679 72960679 A G RIMS1 Missense_Mutation p.N810D 0.46 deleterious(0) probably_damaging(0.997) TCGA-PK-A5HB-01 6 72968725 72968725 T A RIMS1 Silent p.R988R 0.49 TCGA-PK-A5HB-01 6 73000437 73000437 C T RIMS1 Nonsense_Mutation p.Q1204* 0.39 TCGA-PK-A5HB-01 6 7585739 7585739 A G DSP Silent p.E2748E 0.39 TCGA-PK-A5HB-01 6 76380283 76380283 T C SENP6 Silent p.I413I 0.41 TCGA-PK-A5HB-01 6 7880448 7880448 T C BMP6 Missense_Mutation p.Y472H 0.38 tolerated(0.53) possibly_damaging(0.897) TCGA-PK-A5HB-01 6 79913320 79913320 T A HMGN3 Nonsense_Mutation p.K42* 0.44 TCGA-PK-A5HB-01 6 8041439 8041439 T C BLOC1S5 Silent p.T86T 0.53 TCGA-PK-A5HB-01 6 83849997 83849997 A G DOPEY1 Missense_Mutation p.I1764V 0.38 tolerated(1) possibly_damaging(0.57) TCGA-PK-A5HB-01 6 87967774 87967774 C T ZNF292 Missense_Mutation p.T1476I 0.44 deleterious(0.01) benign(0.128) TCGA-PK-A5HB-01 6 90377855 90377855 T C MDN1 Missense_Mutation p.K4658E 0.42 benign(0.1) TCGA-PK-A5HB-01 6 96654643 96654644 - T FUT9 3'UTR 0.25 TCGA-PK-A5HB-01 6 96656513 96656513 T A FUT9 3'UTR 0.50 TCGA-PK-A5HB-01 7 100172657 100172657 T C LRCH4 3'UTR 0.46 TCGA-PK-A5HB-01 7 100417182 100417182 C A EPHB4 Nonsense_Mutation p.E432* 0.39 TCGA-PK-A5HB-01 7 100490017 100490017 C A ACHE Silent p.T497T 0.06 TCGA-PK-A5HB-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.55 TCGA-PK-A5HB-01 7 105255170 105255170 G A ATXN7L1 Silent p.N537N 0.40 TCGA-PK-A5HB-01 7 106508801 106508801 A G PIK3CG Silent p.Q265Q 0.41 TCGA-PK-A5HB-01 7 106844034 106844034 T C COG5 Missense_Mutation p.E837G 0.39 tolerated(0.65) benign(0.002) TCGA-PK-A5HB-01 7 107217974 107217974 T C DUS4L Missense_Mutation p.I308T 0.40 deleterious(0.02) benign(0.244) TCGA-PK-A5HB-01 7 107696427 107696427 G T LAMB4 Silent p.T1135T 0.49 TCGA-PK-A5HB-01 7 108112846 108112846 C T PNPLA8 Silent p.%3D 0.35 TCGA-PK-A5HB-01 7 1097616 1097616 G A GPR146 Silent p.A155A 0.47 TCGA-PK-A5HB-01 7 110764462 110764462 C T LRRN3 Missense_Mutation p.S545F 0.52 tolerated(0.7) probably_damaging(0.927) TCGA-PK-A5HB-01 7 111428773 111428773 T C DOCK4 Missense_Mutation p.S1116G 0.52 tolerated(0.35) benign(0.049) TCGA-PK-A5HB-01 7 114655908 114655908 T C MDFIC Silent p.C329C 0.42 TCGA-PK-A5HB-01 7 117062381 117062381 A G ASZ1 Missense_Mutation p.W80R 0.48 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HB-01 7 121608015 121608015 T A PTPRZ1 Missense_Mutation p.N45K 0.44 deleterious(0) possibly_damaging(0.9) TCGA-PK-A5HB-01 7 124404170 124404170 G A GPR37 Silent p.C287C 0.37 TCGA-PK-A5HB-01 7 126086177 126086177 T C GRM8 Intron 0.47 TCGA-PK-A5HB-01 7 127292422 127292422 C A SND1 5'UTR 0.41 TCGA-PK-A5HB-01 7 128038611 128038611 C T IMPDH1 Missense_Mutation p.D311N 0.45 deleterious(0.02) possibly_damaging(0.672) TCGA-PK-A5HB-01 7 128517620 128517620 G A KCP RNA 0.45 TCGA-PK-A5HB-01 7 128518652 128518652 A G KCP RNA 0.32 TCGA-PK-A5HB-01 7 128585921 128585921 A T IRF5 Missense_Mutation p.K73I 0.46 deleterious(0) possibly_damaging(0.747) TCGA-PK-A5HB-01 7 129008138 129008138 A C AHCYL2 Intron 0.56 TCGA-PK-A5HB-01 7 133842788 133842788 G A LRGUK Missense_Mutation p.G224D 0.32 tolerated(0.27) benign(0.002) TCGA-PK-A5HB-01 7 135262571 135262571 C T NUP205 Nonsense_Mutation p.Q226* 0.38 TCGA-PK-A5HB-01 7 139655387 139655387 A G TBXAS1 Silent p.R270R 0.39 TCGA-PK-A5HB-01 7 140246681 140246681 A T DENND2A Missense_Mutation p.M699K 0.40 deleterious(0) probably_damaging(0.992) TCGA-PK-A5HB-01 7 141333740 141333740 C T AGK Nonsense_Mutation p.R210* 0.41 TCGA-PK-A5HB-01 7 141736707 141736707 C T MGAM Missense_Mutation p.P721S 0.45 deleterious(0) probably_damaging(0.996) TCGA-PK-A5HB-01 7 141805626 141805626 G A MGAM Missense_Mutation p.D1837N 0.37 tolerated(0.33) benign(0.001) TCGA-PK-A5HB-01 7 142562373 142562373 G A EPHB6 Missense_Mutation p.G272E 0.27 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 7 142750331 142750331 G A OR6V1 Silent p.V298V 0.41 TCGA-PK-A5HB-01 7 143632752 143632752 A G OR2F2 Missense_Mutation p.R143G 0.40 tolerated(0.63) benign(0.219) TCGA-PK-A5HB-01 7 144071858 144071858 G A ARHGEF5 Missense_Mutation p.V1392M 0.15 deleterious(0) probably_damaging(0.995) TCGA-PK-A5HB-01 7 149493469 149493469 G A SSPO RNA 0.45 TCGA-PK-A5HB-01 7 149508059 149508059 C - SSPO RNA 0.30 TCGA-PK-A5HB-01 7 150034194 150034194 G A LRRC61 Missense_Mutation p.V82I 0.36 tolerated(0.31) benign(0.116) TCGA-PK-A5HB-01 7 150069842 150069842 G A REPIN1 Silent p.S561S 0.45 TCGA-PK-A5HB-01 7 150174335 150174335 G A GIMAP8 Missense_Mutation p.V489M 0.39 deleterious(0) probably_damaging(0.978) TCGA-PK-A5HB-01 7 150771569 150771569 T C SLC4A2 Silent p.Y958Y 0.44 TCGA-PK-A5HB-01 7 155596348 155596348 G A SHH Missense_Mutation p.T212I 0.46 tolerated(0.2) possibly_damaging(0.892) TCGA-PK-A5HB-01 7 158829448 158829448 C G VIPR2 Missense_Mutation p.G248A 0.38 deleterious(0) probably_damaging(0.974) TCGA-PK-A5HB-01 7 16649291 16649291 G A ANKMY2 Silent p.L282L 0.32 TCGA-PK-A5HB-01 7 16900121 16900121 T C AGR3 Intron 0.35 TCGA-PK-A5HB-01 7 1733563 1733563 C T AC074389.6 5'UTR 0.35 TCGA-PK-A5HB-01 7 1784587 1784587 C T ELFN1 Missense_Mutation p.R119W 0.41 deleterious(0) probably_damaging(0.949) TCGA-PK-A5HB-01 7 18625005 18625005 C T HDAC9 Missense_Mutation p.R42C 0.47 deleterious(0.02) probably_damaging(0.99) TCGA-PK-A5HB-01 7 20180768 20180768 G T MACC1 Missense_Mutation p.P787H 0.32 deleterious(0) probably_damaging(0.969) TCGA-PK-A5HB-01 7 21516828 21516828 C T SP4 Nonsense_Mutation p.Q604* 0.48 TCGA-PK-A5HB-01 7 21932249 21932249 C T DNAH11 Silent p.L4245L 0.07 TCGA-PK-A5HB-01 7 24738664 24738664 A C DFNA5 Nonsense_Mutation p.L491* 0.41 TCGA-PK-A5HB-01 7 28996482 28996482 G - AC005013.5 5'Flank 0.32 TCGA-PK-A5HB-01 7 31117638 31117638 T G ADCYAP1R1 Missense_Mutation p.W64G 0.37 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 7 36450230 36450230 C T ANLN Missense_Mutation p.P402S 0.36 deleterious(0.05) probably_damaging(0.996) TCGA-PK-A5HB-01 7 38289089 38289089 G A TRGC2 Missense_Mutation p.T29I 0.31 deleterious(0.02) probably_damaging(1) TCGA-PK-A5HB-01 7 39243895 39243895 G A POU6F2 Silent p.Q84Q 0.36 TCGA-PK-A5HB-01 7 4285348 4285348 G A SDK1 Missense_Mutation p.D2098N 0.36 deleterious(0) possibly_damaging(0.803) TCGA-PK-A5HB-01 7 44268836 44268836 C T CAMK2B Intron 0.50 TCGA-PK-A5HB-01 7 45124123 45124123 T C NACAD Silent p.E552E 0.39 TCGA-PK-A5HB-01 7 45124945 45124945 G T NACAD Silent p.S278S 0.41 TCGA-PK-A5HB-01 7 45124952 45124952 G C NACAD Missense_Mutation p.S276C 0.43 deleterious(0.04) possibly_damaging(0.867) TCGA-PK-A5HB-01 7 45125542 45125542 T A NACAD Silent p.A79A 0.33 TCGA-PK-A5HB-01 7 45139901 45139901 G A TBRG4 3'UTR 0.47 TCGA-PK-A5HB-01 7 45144212 45144212 C T TBRG4 Missense_Mutation p.A278T 0.46 deleterious(0) probably_damaging(0.983) TCGA-PK-A5HB-01 7 45222787 45222787 A - RAMP3 Frame_Shift_Del p.M75Wfs*48 0.31 TCGA-PK-A5HB-01 7 45954540 45954540 C T IGFBP3 Missense_Mutation p.R258H 0.37 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 7 47859203 47859203 G A C7orf69 3'UTR 0.36 TCGA-PK-A5HB-01 7 47983029 47983029 A G PKD1L1 Missense_Mutation p.C42R 0.40 deleterious_low_confidence(0.02) benign(0.193) TCGA-PK-A5HB-01 7 48311465 48311465 A G ABCA13 Silent p.L734L 0.49 TCGA-PK-A5HB-01 7 51096471 51096471 G A COBL Silent p.N774N 0.41 TCGA-PK-A5HB-01 7 5330852 5330852 C A SLC29A4 Missense_Mutation p.H133Q 0.44 tolerated(0.17) benign(0.018) TCGA-PK-A5HB-01 7 6006678 6006679 - AG RSPH10B Frame_Shift_Ins p.D24Lfs*4 0.19 TCGA-PK-A5HB-01 7 66474576 66474576 G A TYW1 Missense_Mutation p.A94T 0.42 deleterious(0) probably_damaging(0.974) TCGA-PK-A5HB-01 7 6854405 6854405 A G CCZ1B Missense_Mutation p.I257T 0.47 tolerated(0.26) benign(0.005) TCGA-PK-A5HB-01 7 70255628 70255628 G A AUTS2 Silent p.E1142E 0.43 TCGA-PK-A5HB-01 7 72159704 72159704 A C MIR4650-2 5'Flank 0.44 TCGA-PK-A5HB-01 7 72850023 72850023 A G FZD9 Silent p.G562G 0.35 TCGA-PK-A5HB-01 7 72984826 72984826 C T TBL2 3'UTR 0.40 TCGA-PK-A5HB-01 7 72985169 72985169 C T TBL2 Missense_Mutation p.A338T 0.43 deleterious(0.01) probably_damaging(0.984) TCGA-PK-A5HB-01 7 73279962 73279962 A T WBSCR28 Missense_Mutation p.Y186F 0.41 tolerated(0.1) benign(0.002) TCGA-PK-A5HB-01 7 8124630 8124630 G A GLCCI1 Silent p.K427K 0.38 TCGA-PK-A5HB-01 7 86537770 86537770 A G KIAA1324L Missense_Mutation p.F817L 0.35 tolerated(0.06) benign(0.099) TCGA-PK-A5HB-01 7 86998758 86998758 T C CROT Missense_Mutation p.V233A 0.43 tolerated(1) benign(0.004) TCGA-PK-A5HB-01 7 88963113 88963113 A G ZNF804B Missense_Mutation p.T273A 0.50 tolerated(0.46) benign(0.006) TCGA-PK-A5HB-01 7 92134188 92134188 G A PEX1 Silent p.T643T 0.34 TCGA-PK-A5HB-01 7 99091800 99091800 A - ZNF394 Frame_Shift_Del p.F346Lfs*56 0.30 TCGA-PK-A5HB-01 7 99144838 99144839 AT - FAM200A Frame_Shift_Del p.M398Vfs*14 0.27 TCGA-PK-A5HB-01 7 99507254 99507254 G A TRIM4 Silent p.L167L 0.40 TCGA-PK-A5HB-01 7 99688715 99688715 C T COPS6 Missense_Mutation p.R197C 0.10 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 7 99933860 99933860 G T PILRB 5'UTR 0.64 TCGA-PK-A5HB-01 8 101299882 101299882 A G RNF19A Missense_Mutation p.I174T 0.82 deleterious(0) probably_damaging(0.982) TCGA-PK-A5HB-01 8 10465815 10465815 G A RP1L1 Silent p.D1931D 0.77 TCGA-PK-A5HB-01 8 110457219 110457219 T A PKHD1L1 Nonsense_Mutation p.Y1707* 0.72 TCGA-PK-A5HB-01 8 11189624 11189624 G A SLC35G5 Missense_Mutation p.E337K 0.33 deleterious(0.02) benign(0.383) TCGA-PK-A5HB-01 8 113418864 113418864 C G CSMD3 Missense_Mutation p.V1900L 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-PK-A5HB-01 8 114110996 114110996 T A CSMD3 Silent p.P302P 0.82 TCGA-PK-A5HB-01 8 12580711 12580711 A G LONRF1 Missense_Mutation p.V739A 0.72 deleterious(0) probably_damaging(0.973) TCGA-PK-A5HB-01 8 126067843 126067843 C A KIAA0196 Missense_Mutation p.G696V 0.79 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 8 133900673 133900673 G A TG Missense_Mutation p.G874D 0.81 tolerated(0.15) benign(0.132) TCGA-PK-A5HB-01 8 134060153 134060153 C G SLA Missense_Mutation p.D132H 0.77 deleterious(0.02) probably_damaging(0.957) TCGA-PK-A5HB-01 8 134146920 134146920 A G TG Missense_Mutation p.D2730G 0.69 tolerated(0.51) benign(0.005) TCGA-PK-A5HB-01 8 135621018 135621018 A G ZFAT Missense_Mutation p.Y247H 0.83 tolerated(0.07) probably_damaging(0.994) TCGA-PK-A5HB-01 8 141749130 141749130 G A PTK2 Silent p.D604D 0.71 TCGA-PK-A5HB-01 8 142517208 142517208 C T MROH5 Silent p.P14P 0.76 TCGA-PK-A5HB-01 8 144731984 144731984 G A ZNF623 5'UTR 0.74 TCGA-PK-A5HB-01 8 145579168 145579168 A T FBXL6 3'UTR 0.75 TCGA-PK-A5HB-01 8 145697998 145697998 C T KIFC2 Silent p.A590A 0.67 TCGA-PK-A5HB-01 8 145699949 145699949 C T FOXH1 Missense_Mutation p.G257D 0.91 tolerated_low_confidence(0.11) benign(0.027) TCGA-PK-A5HB-01 8 146032798 146032798 A G ZNF517 Missense_Mutation p.D166G 0.71 tolerated(0.57) benign(0.002) TCGA-PK-A5HB-01 8 20110358 20110358 T C LZTS1 Missense_Mutation p.K362E 0.85 deleterious(0) benign(0.025) TCGA-PK-A5HB-01 8 24775356 24775356 A G NEFM Missense_Mutation p.E663G 0.75 deleterious(0.01) benign(0.403) TCGA-PK-A5HB-01 8 25191625 25191625 C T DOCK5 Missense_Mutation p.S702L 0.80 deleterious(0) benign(0.206) TCGA-PK-A5HB-01 8 25261192 25261192 C T DOCK5 Missense_Mutation p.T1682I 0.84 deleterious(0.04) benign(0.002) TCGA-PK-A5HB-01 8 25364499 25364499 G A CDCA2 Missense_Mutation p.A773T 0.90 tolerated(1) benign(0.004) TCGA-PK-A5HB-01 8 2795999 2795999 G A CSMD1 3'Flank 0.67 TCGA-PK-A5HB-01 8 28929234 28929234 G A KIF13B Silent p.V1707V 0.80 TCGA-PK-A5HB-01 8 32620757 32620757 A T NRG1 Intron 0.73 TCGA-PK-A5HB-01 8 37792696 37792696 G A GOT1L1 Silent p.L323L 0.78 TCGA-PK-A5HB-01 8 38003893 38003893 C A STAR Missense_Mutation p.D127Y 0.74 deleterious(0.01) possibly_damaging(0.6) TCGA-PK-A5HB-01 8 41566384 41566384 G A ANK1 Missense_Mutation p.T670M 0.75 deleterious(0.02) possibly_damaging(0.819) TCGA-PK-A5HB-01 8 48689404 48689404 C T PRKDC Splice_Site p.X4060_splice 0.67 TCGA-PK-A5HB-01 8 53044610 53044610 G A ST18 Silent p.S858S 0.74 TCGA-PK-A5HB-01 8 57905818 57905818 G A IMPAD1 Silent p.G109G 0.69 TCGA-PK-A5HB-01 8 67755735 67755735 G A SGK3 Missense_Mutation p.D343N 0.77 deleterious(0.03) benign(0.36) TCGA-PK-A5HB-01 8 68395953 68395953 A T CPA6 Intron 0.79 TCGA-PK-A5HB-01 8 70981595 70981595 G A PRDM14 Silent p.S167S 0.81 TCGA-PK-A5HB-01 8 71057034 71057034 C T NCOA2 Silent p.Q885Q 0.78 TCGA-PK-A5HB-01 8 72977700 72977700 C T TRPA1 Missense_Mutation p.A180T 0.85 deleterious(0.01) possibly_damaging(0.825) TCGA-PK-A5HB-01 8 73848647 73848647 G A KCNB2 Missense_Mutation p.V353I 0.73 tolerated(0.06) possibly_damaging(0.781) TCGA-PK-A5HB-01 8 87443898 87443898 A C WWP1 Missense_Mutation p.E509D 0.80 tolerated(0.55) possibly_damaging(0.852) TCGA-PK-A5HB-01 8 88885852 88885852 C T DCAF4L2 Silent p.P116P 0.07 TCGA-PK-A5HB-01 8 90937358 90937358 A G OSGIN2 Silent p.L416L 0.73 TCGA-PK-A5HB-01 8 93023263 93023263 G A RUNX1T1 Silent p.F186F 0.65 TCGA-PK-A5HB-01 8 93029539 93029539 C T RUNX1T1 Silent p.T58T 0.72 TCGA-PK-A5HB-01 9 101494815 101494815 G A ANKS6 3'UTR 0.36 TCGA-PK-A5HB-01 9 108126992 108126992 A G SLC44A1 Missense_Mutation p.Y415C 0.42 deleterious(0) probably_damaging(0.994) TCGA-PK-A5HB-01 9 111696815 111696815 G A FAM206A Missense_Mutation p.D17N 0.42 deleterious(0.03) benign(0.043) TCGA-PK-A5HB-01 9 113192665 113192665 C G SVEP1 Missense_Mutation p.V1807L 0.44 benign(0.047) TCGA-PK-A5HB-01 9 114148674 114148674 C T KIAA0368 Nonsense_Mutation p.W1348* 0.40 TCGA-PK-A5HB-01 9 114986217 114986217 C T PTBP3 Missense_Mutation p.A531T 0.39 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 9 116269609 116269609 C T RGS3 Silent p.V376V 0.42 TCGA-PK-A5HB-01 9 119488071 119488071 G A ASTN2 Silent p.L878L 0.45 TCGA-PK-A5HB-01 9 123367687 123367687 T A MEGF9 Silent p.G530G 0.37 TCGA-PK-A5HB-01 9 124064309 124064309 G A GSN Nonsense_Mutation p.W71* 0.45 TCGA-PK-A5HB-01 9 125391061 125391061 T A OR1B1 Missense_Mutation p.T252S 0.41 tolerated(1) probably_damaging(0.977) TCGA-PK-A5HB-01 9 125673275 125673275 G A ZBTB6 Silent p.C359C 0.48 TCGA-PK-A5HB-01 9 126132455 126132455 G A CRB2 Missense_Mutation p.D375N 0.36 deleterious(0.02) possibly_damaging(0.822) TCGA-PK-A5HB-01 9 12698448 12698448 T C TYRP1 Intron 0.44 TCGA-PK-A5HB-01 9 128322005 128322005 T A MAPKAP1 Missense_Mutation p.E252V 0.48 deleterious(0) possibly_damaging(0.821) TCGA-PK-A5HB-01 9 129642194 129642194 C T ZBTB34 Silent p.C168C 0.48 TCGA-PK-A5HB-01 9 130578397 130578397 C A ENG Intron 0.44 TCGA-PK-A5HB-01 9 131346591 131346591 C T SPTAN1 Missense_Mutation p.R742C 0.32 tolerated(0.05) possibly_damaging(0.781) TCGA-PK-A5HB-01 9 131469666 131469666 A T PKN3 Nonsense_Mutation p.K273* 0.43 TCGA-PK-A5HB-01 9 131480648 131480650 AGA - PKN3 In_Frame_Del p.K679del 0.27 TCGA-PK-A5HB-01 9 132403023 132403023 G T ASB6 Intron 0.45 TCGA-PK-A5HB-01 9 133556768 133556768 G A PRDM12 Silent p.V272V 0.19 TCGA-PK-A5HB-01 9 134366821 134366821 C T PRRC2B Missense_Mutation p.P2079S 0.43 deleterious(0.05) possibly_damaging(0.905) TCGA-PK-A5HB-01 9 136037733 136037733 G T GBGT1 Missense_Mutation p.L23M 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.906) TCGA-PK-A5HB-01 9 136501745 136501745 C T DBH Silent p.G84G 0.35 TCGA-PK-A5HB-01 9 136568258 136568258 C A SARDH Intron 0.37 TCGA-PK-A5HB-01 9 137734241 137734241 G T COL5A1 3'UTR 0.27 TCGA-PK-A5HB-01 9 139700573 139700573 A G CCDC183 Missense_Mutation p.N331S 0.46 tolerated(0.1) benign(0.297) TCGA-PK-A5HB-01 9 140058395 140058395 C T GRIN1 Intron 0.44 TCGA-PK-A5HB-01 9 140084326 140084326 C T SSNA1 Missense_Mutation p.T107I 0.45 tolerated(0.16) benign(0.01) TCGA-PK-A5HB-01 9 140145761 140145761 C T C9orf173 Missense_Mutation p.A8V 0.46 deleterious(0) probably_damaging(0.971) TCGA-PK-A5HB-01 9 140509512 140509512 C T ARRDC1 Intron 0.53 TCGA-PK-A5HB-01 9 140671199 140671199 A G EHMT1 Missense_Mutation p.T641A 0.44 deleterious(0.02) possibly_damaging(0.625) TCGA-PK-A5HB-01 9 140850238 140850238 G A CACNA1B Missense_Mutation p.G387R 0.42 deleterious(0.01) benign(0.267) TCGA-PK-A5HB-01 9 141070908 141070908 C T TUBBP5 RNA 0.41 TCGA-PK-A5HB-01 9 14776240 14776240 T C FREM1 Intron 0.43 TCGA-PK-A5HB-01 9 16436339 16436339 A T BNC2 Missense_Mutation p.M618K 0.50 tolerated(0.08) benign(0.015) TCGA-PK-A5HB-01 9 19520911 19520911 T A SLC24A2 Missense_Mutation p.I573F 0.45 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 9 27567127 27567127 T A C9orf72 5'UTR 0.41 TCGA-PK-A5HB-01 9 32784389 32784389 C A TMEM215 Missense_Mutation p.P70T 0.49 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 9 33264955 33264955 T A CHMP5 5'UTR 0.30 TCGA-PK-A5HB-01 9 34381072 34381072 C T C9orf24 Missense_Mutation p.R177Q 0.51 tolerated(1) benign(0.002) TCGA-PK-A5HB-01 9 34993362 34993362 G A DNAJB5 Silent p.K158K 0.33 TCGA-PK-A5HB-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.31 TCGA-PK-A5HB-01 9 35044520 35044520 C A C9orf131 Missense_Mutation p.Q632K 0.37 tolerated(0.09) benign(0.022) TCGA-PK-A5HB-01 9 35720206 35720206 G A TLN1 Silent p.L432L 0.22 TCGA-PK-A5HB-01 9 35735312 35735312 A G CREB3 Silent p.K184K 0.32 TCGA-PK-A5HB-01 9 36170340 36170340 G A CCIN Missense_Mutation p.V281M 0.44 deleterious(0) probably_damaging(0.912) TCGA-PK-A5HB-01 9 36170696 36170696 G C CCIN Silent p.R399R 0.43 TCGA-PK-A5HB-01 9 36581668 36581668 G A MELK 5'UTR 0.44 TCGA-PK-A5HB-01 9 37744759 37744759 G A FRMPD1 Silent p.E910E 0.49 TCGA-PK-A5HB-01 9 37745283 37745283 A G FRMPD1 Missense_Mutation p.D1085G 0.32 tolerated_low_confidence(1) benign(0.001) TCGA-PK-A5HB-01 9 39109179 39109179 C T CNTNAP3 Silent p.G781G 0.44 TCGA-PK-A5HB-01 9 7049096 7049096 G C KDM4C Missense_Mutation p.A774P 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-PK-A5HB-01 9 7049109 7049109 G T KDM4C Missense_Mutation p.C778F 0.36 deleterious(0) probably_damaging(0.983) TCGA-PK-A5HB-01 9 71628334 71628334 T C PRKACG Silent p.L225L 0.45 TCGA-PK-A5HB-01 9 71831374 71831374 G A TJP2 Silent p.L109L 0.45 TCGA-PK-A5HB-01 9 74481623 74481623 A G ABHD17B Intron 0.54 TCGA-PK-A5HB-01 9 74526589 74526589 T C C9orf85 5'UTR 0.42 TCGA-PK-A5HB-01 9 77502855 77502855 G A TRPM6 5'UTR 0.31 TCGA-PK-A5HB-01 9 79325100 79325100 C T PRUNE2 Missense_Mutation p.R697K 0.44 deleterious(0) probably_damaging(0.996) TCGA-PK-A5HB-01 9 82267520 82267520 G A TLE4 Missense_Mutation p.A135T 0.45 tolerated(0.12) possibly_damaging(0.744) TCGA-PK-A5HB-01 9 82267635 82267635 C T TLE4 Missense_Mutation p.S173F 0.43 tolerated(0.15) possibly_damaging(0.812) TCGA-PK-A5HB-01 9 85926825 85926825 A T FRMD3 Missense_Mutation p.N250K 0.45 deleterious(0) benign(0.038) TCGA-PK-A5HB-01 9 88248284 88248284 A G AGTPBP1 Silent p.Y396Y 0.67 TCGA-PK-A5HB-01 9 88576991 88576991 C G NAA35 Missense_Mutation p.P138A 0.51 deleterious(0.01) probably_damaging(0.977) TCGA-PK-A5HB-01 9 94171973 94171973 C T NFIL3 Silent p.T348T 0.36 TCGA-PK-A5HB-01 9 96051773 96051773 C T WNK2 Silent p.G1616G 0.44 TCGA-PK-A5HB-01 9 96097703 96097703 A G C9orf129 Silent p.S106S 0.42 TCGA-PK-A5HB-01 9 98244481 98244481 A G PTCH1 Missense_Mutation p.W197R 0.41 deleterious(0) probably_damaging(0.998) TCGA-PK-A5HB-01 X 105132368 105132368 G A NRK Missense_Mutation p.A112T 0.07 deleterious(0) probably_damaging(0.913) TCGA-PK-A5HB-01 X 105153236 105153236 G A NRK Missense_Mutation p.A536T 0.04 deleterious_low_confidence(0.02) benign(0.154) TCGA-PK-A5HB-01 X 107681217 107681217 C T COL4A6 Nonsense_Mutation p.W7* 0.87 TCGA-PK-A5HB-01 X 110406821 110406821 C A PAK3 Missense_Mutation p.A247D 0.89 tolerated(0.13) benign(0.078) TCGA-PK-A5HB-01 X 117033021 117033021 C T KLHL13 Silent p.V609V 0.88 TCGA-PK-A5HB-01 X 119387857 119387857 T - ZBTB33 Frame_Shift_Del p.C198Afs*43 0.49 TCGA-PK-A5HB-01 X 122757038 122757038 C T THOC2 Silent p.V1200V 0.80 TCGA-PK-A5HB-01 X 122820490 122820490 C T THOC2 Missense_Mutation p.D226N 0.88 tolerated(0.26) benign(0.011) TCGA-PK-A5HB-01 X 123215366 123215366 C T STAG2 Missense_Mutation p.A971V 0.93 tolerated(0.35) possibly_damaging(0.477) TCGA-PK-A5HB-01 X 125298569 125298569 C A DCAF12L2 Missense_Mutation p.G447W 0.86 deleterious(0) probably_damaging(1) TCGA-PK-A5HB-01 X 12728521 12728521 A G FRMPD4 Missense_Mutation p.I492V 0.88 tolerated(0.05) probably_damaging(0.995) TCGA-PK-A5HB-01 X 12840917 12840917 T A PRPS2 3'UTR 0.87 TCGA-PK-A5HB-01 X 135430724 135430725 - A GPR112 Frame_Shift_Ins p.N1622Kfs*62 0.48 TCGA-PK-A5HB-01 X 140926205 140926205 T C MAGEC3 Missense_Mutation p.V35A 0.87 deleterious_low_confidence(0) benign(0.153) TCGA-PK-A5HB-01 X 149931073 149931073 C A MTMR1 Silent p.A623A 0.88 TCGA-PK-A5HB-01 X 150869181 150869181 C T PRRG3 Silent p.R124R 0.84 TCGA-PK-A5HB-01 X 152225360 152225360 G A PNMA3 5'UTR 0.89 TCGA-PK-A5HB-01 X 152685761 152685761 G T ZFP92 Missense_Mutation p.R79I 0.38 tolerated(0.06) benign(0.216) TCGA-PK-A5HB-01 X 152994692 152994692 G A ABCD1 Silent p.E302E 0.05 TCGA-PK-A5HB-01 X 153577327 153577327 G A FLNA Missense_Mutation p.R2612W 0.90 deleterious(0.04) probably_damaging(0.916) TCGA-PK-A5HB-01 X 153599554 153599554 G A FLNA Silent p.G20G 0.91 TCGA-PK-A5HB-01 X 153689660 153689660 C T PLXNA3 Silent p.F272F 0.82 TCGA-PK-A5HB-01 X 153740192 153740192 G A FAM3A Missense_Mutation p.S47L 0.86 tolerated(0.34) benign(0.001) TCGA-PK-A5HB-01 X 155006991 155006991 G C SPRY3 3'UTR 0.79 TCGA-PK-A5HB-01 X 155254979 155254979 T C WASH6P RNA 0.46 TCGA-PK-A5HB-01 X 155255058 155255058 C - WASH6P RNA 0.09 TCGA-PK-A5HB-01 X 27765447 27765447 A G DCAF8L2 Silent p.E145E 0.88 TCGA-PK-A5HB-01 X 299353 299353 C T PPP2R3B Silent p.E521E 0.75 TCGA-PK-A5HB-01 X 31514923 31514924 - T DMD Frame_Shift_Ins p.Q2844Afs*6 0.09 TCGA-PK-A5HB-01 X 41437770 41437770 C T CASK Silent p.Q442Q 0.81 TCGA-PK-A5HB-01 X 48826683 48826683 C T KCND1 5'UTR 0.91 TCGA-PK-A5HB-01 X 49370771 49370771 T C GAGE1 3'UTR 0.67 TCGA-PK-A5HB-01 X 51150696 51150696 C T CXorf67 Silent p.G276G 0.85 TCGA-PK-A5HB-01 X 53432788 53432788 G A SMC1A Missense_Mutation p.S549L 0.04 deleterious(0) possibly_damaging(0.848) TCGA-PK-A5HB-01 X 78616967 78616967 A T ITM2A Missense_Mutation p.Y188N 0.85 deleterious(0) possibly_damaging(0.853) TCGA-PK-A5HB-01 X 84342731 84342731 C T APOOL 3'UTR 0.91 TCGA-PK-A5HB-01 X 84519342 84519342 T C ZNF711 Silent p.D228D 0.88 TCGA-PK-A5HB-01 X 88008936 88008936 A G CPXCR1 Missense_Mutation p.K174R 0.84 deleterious(0) possibly_damaging(0.801) TCGA-PK-A5HC-01 11 118374844 118374844 G C KMT2A Missense_Mutation p.R2746T 0.40 probably_damaging(0.918) TCGA-PK-A5HC-01 11 56431814 56431814 A G OR5AR1 Missense_Mutation p.Y218C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-PK-A5HC-01 11 608465 608465 G C PHRF1 Missense_Mutation p.K1002N 0.33 deleterious(0.02) possibly_damaging(0.895) TCGA-PK-A5HC-01 12 63131354 63131354 G C PPM1H Missense_Mutation p.I294M 0.20 deleterious(0.01) possibly_damaging(0.839) TCGA-PK-A5HC-01 14 105414374 105414374 C G AHNAK2 Missense_Mutation p.A2472P 0.36 benign(0.023) TCGA-PK-A5HC-01 14 91647656 91647656 C A C14orf159 Missense_Mutation p.P286H 0.26 deleterious(0) probably_damaging(1) TCGA-PK-A5HC-01 15 28510816 28510816 G A HERC2 Silent p.I606I 0.42 TCGA-PK-A5HC-01 15 41853473 41853473 C T TYRO3 Silent p.I91I 0.41 TCGA-PK-A5HC-01 16 19451450 19451450 G T TMC5 Missense_Mutation p.L30F 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.827) TCGA-PK-A5HC-01 16 19488768 19488768 C G TMC5 Missense_Mutation p.I699M 0.23 deleterious(0) possibly_damaging(0.903) TCGA-PK-A5HC-01 16 2136869 2136869 C G TSC2 Missense_Mutation p.I1662M 0.05 deleterious(0) probably_damaging(0.999) TCGA-PK-A5HC-01 17 34073260 34073260 G C GAS2L2 Missense_Mutation p.S419C 0.49 deleterious(0.04) possibly_damaging(0.903) TCGA-PK-A5HC-01 17 7385476 7385476 C T SLC35G6 Missense_Mutation p.S58F 0.20 deleterious(0.02) benign(0.038) TCGA-PK-A5HC-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.50 TCGA-PK-A5HC-01 18 19780774 19780774 G C GATA6 Silent p.L592L 0.14 TCGA-PK-A5HC-01 18 3079307 3079307 C T MYOM1 Silent p.K1506K 0.20 TCGA-PK-A5HC-01 18 44435530 44435530 C A PIAS2 Missense_Mutation p.L211F 0.10 deleterious(0.01) probably_damaging(0.961) TCGA-PK-A5HC-01 18 67795600 67795600 G A RTTN Missense_Mutation p.T1046M 0.05 tolerated(0.18) benign(0.391) TCGA-PK-A5HC-01 19 40174427 40174427 A T AC093063.3 5'Flank 0.23 TCGA-PK-A5HC-01 19 46733364 46733364 G C IGFL1 Splice_Site p.X9_splice 0.35 TCGA-PK-A5HC-01 19 49637077 49637077 G A PPFIA3 Missense_Mutation p.E396K 0.29 deleterious(0) probably_damaging(0.997) TCGA-PK-A5HC-01 19 52003536 52003536 G C SIGLEC12 Nonsense_Mutation p.S149* 0.25 TCGA-PK-A5HC-01 19 53343153 53343153 G A ZNF468 3'UTR 0.14 TCGA-PK-A5HC-01 19 9056461 9056461 G A MUC16 Missense_Mutation p.P10329S 0.03 benign(0.003) TCGA-PK-A5HC-01 19 9090327 9090327 G T MUC16 Missense_Mutation p.S496R 0.25 unknown(0) TCGA-PK-A5HC-01 1 107600947 107600947 C T PRMT6 3'UTR 0.22 TCGA-PK-A5HC-01 1 107600948 107600948 C T PRMT6 3'UTR 0.22 TCGA-PK-A5HC-01 1 158324185 158324185 C A CD1E Missense_Mutation p.S26Y 0.26 tolerated(0.67) benign(0.388) TCGA-PK-A5HC-01 1 158725430 158725430 C A OR6K6 Missense_Mutation p.F275L 0.23 tolerated(0.08) possibly_damaging(0.823) TCGA-PK-A5HC-01 1 159021731 159021731 A T IFI16 Missense_Mutation p.E587V 0.22 deleterious(0) probably_damaging(0.996) TCGA-PK-A5HC-01 1 18691917 18691917 C T IGSF21 Silent p.S247S 0.09 TCGA-PK-A5HC-01 1 201182038 201182038 G T IGFN1 Missense_Mutation p.G2673C 0.22 probably_damaging(0.998) TCGA-PK-A5HC-01 1 220369717 220369717 C G RAB3GAP2 Missense_Mutation p.D279H 0.25 deleterious(0) possibly_damaging(0.884) TCGA-PK-A5HC-01 1 22055060 22055060 G C USP48 Intron 0.27 TCGA-PK-A5HC-01 1 233372603 233372603 C A PCNXL2 Silent p.S782S 0.09 TCGA-PK-A5HC-01 1 236902810 236902810 C T ACTN2 Missense_Mutation p.P362L 0.27 deleterious(0.01) probably_damaging(0.915) TCGA-PK-A5HC-01 1 248685138 248685138 G T OR2G6 Missense_Mutation p.S64I 0.24 deleterious(0.01) benign(0.072) TCGA-PK-A5HC-01 1 38482069 38482069 G T UTP11L Missense_Mutation p.K34N 0.27 deleterious(0) probably_damaging(0.995) TCGA-PK-A5HC-01 1 97272469 97272469 G A PTBP2 Missense_Mutation p.D376N 0.20 tolerated(0.14) possibly_damaging(0.843) TCGA-PK-A5HC-01 2 120124542 120124542 A C DBI 5'Flank 0.46 TCGA-PK-A5HC-01 2 168104662 168104662 C T XIRP2 Silent p.L2254L 0.32 TCGA-PK-A5HC-01 2 201440158 201440158 C T SGOL2 Silent p.F1252F 0.29 TCGA-PK-A5HC-01 2 31428282 31428282 C A CAPN14 Missense_Mutation p.W11L 0.35 tolerated(0.48) benign(0.057) TCGA-PK-A5HC-01 2 38800509 38800509 G T HNRNPLL Missense_Mutation p.P307H 0.33 tolerated(0.15) probably_damaging(0.931) TCGA-PK-A5HC-01 2 5837544 5837544 G T SOX11 3'UTR 0.34 TCGA-PK-A5HC-01 2 96962720 96962720 T C SNRNP200 Missense_Mutation p.Y489C 0.32 tolerated(0.11) benign(0.005) TCGA-PK-A5HC-01 3 123385189 123385189 C T MYLK Missense_Mutation p.M1236I 0.29 tolerated(0.08) benign(0.018) TCGA-PK-A5HC-01 3 193039524 193039524 C A ATP13A5 Missense_Mutation p.V621F 0.40 deleterious(0.01) possibly_damaging(0.47) TCGA-PK-A5HC-01 3 196669275 196669275 C T NCBP2 Intron 0.30 TCGA-PK-A5HC-01 3 44283769 44283769 G C TOPAZ1 Missense_Mutation p.G75A 0.22 tolerated(0.13) benign(0.012) TCGA-PK-A5HC-01 3 62631437 62631437 C G CADPS Missense_Mutation p.E429Q 0.24 tolerated(0.05) benign(0.403) TCGA-PK-A5HC-01 4 115544026 115544026 T C UGT8 Intron 0.05 TCGA-PK-A5HC-01 4 128608947 128608947 G A INTU Silent p.Q458Q 0.19 TCGA-PK-A5HC-01 4 47850122 47850122 C G NFXL1 3'UTR 0.29 TCGA-PK-A5HC-01 4 71510524 71510524 G T ENAM Silent p.G1127G 0.16 TCGA-PK-A5HC-01 4 74012588 74012588 C A ANKRD17 Missense_Mutation p.A588S 0.17 probably_damaging(0.963) TCGA-PK-A5HC-01 4 91234151 91234151 T C CCSER1 Silent p.L488L 0.08 TCGA-PK-A5HC-01 4 99996090 99996090 G A ADH5 Silent p.R312R 0.07 TCGA-PK-A5HC-01 5 112257162 112257162 T C REEP5 Intron 0.38 TCGA-PK-A5HC-01 5 131007363 131007364 - T FNIP1 Frame_Shift_Ins p.I925Nfs*6 0.33 TCGA-PK-A5HC-01 5 140223018 140223018 C A PCDHA8 Silent p.I704I 0.11 TCGA-PK-A5HC-01 5 140515063 140515063 T G PCDHB5 Missense_Mutation p.F16C 0.42 tolerated_low_confidence(0.06) benign(0.017) TCGA-PK-A5HC-01 5 140564475 140564475 A T PCDHB16 3'UTR 0.29 TCGA-PK-A5HC-01 5 149758877 149758877 C G TCOF1 Missense_Mutation p.A855G 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-PK-A5HC-01 5 176318107 176318107 C A HK3 Silent p.G115G 0.12 TCGA-PK-A5HC-01 5 73169041 73169041 C G ARHGEF28 Missense_Mutation p.I928M 0.27 deleterious(0) probably_damaging(1) TCGA-PK-A5HC-01 6 101246658 101246658 C G ASCC3 Missense_Mutation p.R442S 0.18 tolerated(0.84) benign(0.001) TCGA-PK-A5HC-01 6 27419101 27419101 C T ZNF184 Missense_Mutation p.R746K 0.13 tolerated(0.19) benign(0.26) TCGA-PK-A5HC-01 6 32007391 32007391 C G CYP21A2 Silent p.S206S 0.25 TCGA-PK-A5HC-01 6 47200618 47200618 C A TNFRSF21 Missense_Mutation p.E617D 0.16 deleterious(0.01) possibly_damaging(0.767) TCGA-PK-A5HC-01 6 49416590 49416590 C G MUT Missense_Mutation p.E461D 0.14 tolerated_low_confidence(0.07) benign(0.002) TCGA-PK-A5HC-01 6 52051189 52051189 G A IL17A 5'UTR 0.32 TCGA-PK-A5HC-01 6 52871155 52871155 T C ICK Missense_Mutation p.M568V 0.23 tolerated(0.15) benign(0) TCGA-PK-A5HC-01 6 70890358 70890358 G T COL19A1 Missense_Mutation p.E906D 0.15 tolerated(0.09) benign(0.174) TCGA-PK-A5HC-01 6 99848374 99848374 C G PNISR 3'UTR 0.12 TCGA-PK-A5HC-01 7 128851520 128851520 C T SMO Silent p.S615S 0.29 TCGA-PK-A5HC-01 7 151478345 151478345 C T PRKAG2 Missense_Mutation p.R120H 0.62 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-PK-A5HC-01 7 6777373 6777373 C G PMS2CL RNA 0.33 TCGA-PK-A5HC-01 8 11282142 11282142 C T FAM167A Missense_Mutation p.E129K 0.43 deleterious(0.02) possibly_damaging(0.678) TCGA-PK-A5HC-01 8 37823625 37823625 C A ADRB3 Silent p.V121V 0.38 TCGA-PK-A5HC-01 8 87683246 87683246 C T CNGB3 Missense_Mutation p.R140H 0.29 tolerated(0.14) benign(0.041) TCGA-PK-A5HC-01 9 118974097 118974097 G T PAPPA Missense_Mutation p.D602Y 0.15 deleterious(0) probably_damaging(0.961) TCGA-PK-A5HC-01 9 70972137 70972137 G A PGM5 Missense_Mutation p.G32S 0.31 tolerated(0.39) benign(0.008) TCGA-PK-A5HC-01 9 77631307 77631307 T C C9orf41 Missense_Mutation p.D156G 0.07 deleterious(0) possibly_damaging(0.566) TCGA-PK-A5HC-01 9 79438595 79438595 C G PRUNE2 Missense_Mutation p.D237H 0.25 deleterious(0) probably_damaging(1) TCGA-PK-A5HC-01 X 7890140 7890140 C T PNPLA4 Splice_Site p.X61_splice 0.15 TCGA-PK-A5HC-01 X 99955985 99955985 T A SYTL4 Missense_Mutation p.R149S 0.65 tolerated(0.2) probably_damaging(0.996)