sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3C-AAAU-01 10 122668955 122668955 G A WDR11 3'UTR 0.39 TCGA-3C-AAAU-01 10 8115874 8115875 - A GATA3 Frame_Shift_Ins p.P409Afs*99 0.34 TCGA-3C-AAAU-01 11 65272906 65272908 AAA - MALAT1 RNA 0.27 TCGA-3C-AAAU-01 11 66082467 66082467 C T CD248 Missense_Mutation p.E678K 0.07 tolerated(0.12) benign(0.001) TCGA-3C-AAAU-01 11 66193652 66193652 G C NPAS4 3'UTR 0.20 TCGA-3C-AAAU-01 11 89896900 89896900 G A NAALAD2 Intron 0.51 TCGA-3C-AAAU-01 12 56709872 56709872 C G CNPY2 5'UTR 0.26 TCGA-3C-AAAU-01 14 37838785 37838785 A G MIPOL1 Missense_Mutation p.M298V 0.81 tolerated(0.41) benign(0.002) TCGA-3C-AAAU-01 15 72039337 72039337 C G THSD4 Missense_Mutation p.L733V 0.31 deleterious(0.04) benign(0.444) TCGA-3C-AAAU-01 15 75130677 75130677 G A ULK3 Silent p.A392A 0.21 TCGA-3C-AAAU-01 16 1260133 1260133 C T CACNA1H Silent p.N1281N 0.19 TCGA-3C-AAAU-01 16 31336049 31336049 C T ITGAM Silent p.F746F 0.30 TCGA-3C-AAAU-01 16 4382338 4382338 G A GLIS2 Silent p.A19A 0.30 TCGA-3C-AAAU-01 16 66756426 66756427 - A DYNC1LI2 3'UTR 0.40 TCGA-3C-AAAU-01 16 736855 736855 G A WDR24 Silent p.G407G 0.38 TCGA-3C-AAAU-01 16 85709591 85709591 A G GSE1 3'UTR 0.24 TCGA-3C-AAAU-01 19 41837051 41837051 G A TGFB1 Missense_Mutation p.A360V 0.36 tolerated(0.75) benign(0.002) TCGA-3C-AAAU-01 19 44129230 44129230 C A CADM4 Missense_Mutation p.D310Y 0.07 deleterious(0.02) probably_damaging(0.925) TCGA-3C-AAAU-01 19 49120655 49120655 G T RPL18 Missense_Mutation p.T39N 0.31 deleterious(0.02) benign(0.197) TCGA-3C-AAAU-01 1 109817251 109817251 C G CELSR2 3'UTR 0.23 TCGA-3C-AAAU-01 1 120165663 120165663 G A ZNF697 Missense_Mutation p.R435W 0.10 deleterious(0) probably_damaging(0.994) TCGA-3C-AAAU-01 1 17084099 17084099 G A MST1L RNA 0.10 TCGA-3C-AAAU-01 1 23409856 23409856 G A KDM1A Silent p.%3D 0.13 TCGA-3C-AAAU-01 1 43827890 43827890 C T CDC20 Missense_Mutation p.H410Y 0.37 deleterious(0.03) benign(0.396) TCGA-3C-AAAU-01 1 85790568 85790568 T A DDAH1 Splice_Site p.X200_splice 0.18 TCGA-3C-AAAU-01 22 39918692 39918692 C G ATF4 3'Flank 0.38 TCGA-3C-AAAU-01 22 41564592 41564593 - AT EP300 Frame_Shift_Ins p.M1339Ifs*2 0.25 TCGA-3C-AAAU-01 2 106015814 106015814 C T FHL2 5'Flank 0.17 TCGA-3C-AAAU-01 2 135095884 135095884 G A MGAT5 Missense_Mutation p.E234K 0.09 tolerated(0.2) benign(0.331) TCGA-3C-AAAU-01 2 145156085 145156085 C T ZEB2 Missense_Mutation p.S890N 0.43 deleterious(0.05) benign(0.015) TCGA-3C-AAAU-01 2 168067270 168067270 G A XIRP2 Silent p.E196E 0.38 TCGA-3C-AAAU-01 2 182541839 182541839 A T NEUROD1 3'UTR 0.30 TCGA-3C-AAAU-01 2 223065935 223065935 C T PAX3 Silent p.T492T 0.43 TCGA-3C-AAAU-01 2 45780807 45780807 T C SRBD1 Missense_Mutation p.D491G 0.29 deleterious(0) probably_damaging(0.945) TCGA-3C-AAAU-01 3 44540898 44540898 A G ZNF852 Silent p.H457H 0.06 TCGA-3C-AAAU-01 4 74846858 74846858 A T PF4 3'UTR 0.06 TCGA-3C-AAAU-01 5 156593092 156593092 G A FAM71B Nonsense_Mutation p.R30* 0.24 TCGA-3C-AAAU-01 5 85589134 85589134 G A NBPF22P RNA 0.13 TCGA-3C-AAAU-01 6 161139409 161139409 G T PLG Missense_Mutation p.V291L 0.72 tolerated(0.3) benign(0.002) TCGA-3C-AAAU-01 7 56130450 56130450 T C CCT6A Splice_Site p.X508_splice 0.20 TCGA-3C-AAAU-01 7 73790458 73790458 C T CLIP2 Missense_Mutation p.A576V 0.40 deleterious(0.03) benign(0.029) TCGA-3C-AAAU-01 8 3224768 3224768 T C CSMD1 Silent p.G967G 0.19 TCGA-3C-AAAU-01 9 131029534 131029534 G A GOLGA2 Missense_Mutation p.A167V 0.04 deleterious(0.01) probably_damaging(0.947) TCGA-3C-AAAU-01 9 140001742 140001742 G A MAN1B1 Missense_Mutation p.G536D 0.35 deleterious(0) probably_damaging(0.999) TCGA-3C-AAAU-01 9 34493290 34493290 G A DNAI1 Silent p.K260K 0.27 TCGA-3C-AAAU-01 9 4679763 4679763 C T CDC37L1 5'UTR 0.43 TCGA-3C-AAAU-01 9 69112892 69112892 T C RP11-87H9.3 5'Flank 0.32 TCGA-3C-AAAU-01 X 14938240 14938240 T C MOSPD2 3'UTR 0.33 TCGA-3C-AAAU-01 X 23412241 23412241 A G PTCHD1 Missense_Mutation p.E869G 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-3C-AAAU-01 X 2773080 2773080 C T GYG2 Missense_Mutation p.A155V 0.27 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 10 103292795 103292795 G A BTRC Silent p.V355V 0.28 TCGA-3C-AALI-01 10 103867505 103867505 G C LDB1 3'UTR 0.13 TCGA-3C-AALI-01 10 104157126 104157126 C T NFKB2 Nonsense_Mutation p.Q155* 0.28 TCGA-3C-AALI-01 10 1175988 1175988 C A WDR37 3'UTR 0.33 TCGA-3C-AALI-01 10 127542738 127542738 C A DHX32 Missense_Mutation p.G295V 0.23 tolerated(0.22) benign(0.016) TCGA-3C-AALI-01 10 129536865 129536865 G A FOXI2 Missense_Mutation p.R198K 0.29 tolerated(0.21) benign(0.364) TCGA-3C-AALI-01 10 15154945 15154945 C T NMT2 Silent p.L396L 0.27 TCGA-3C-AALI-01 10 27324171 27324171 C T ANKRD26 Missense_Mutation p.E1070K 0.28 deleterious(0.02) probably_damaging(0.915) TCGA-3C-AALI-01 10 29813595 29813595 C T SVIL Missense_Mutation p.E798K 0.30 deleterious(0) benign(0.292) TCGA-3C-AALI-01 10 32800605 32800605 C G CCDC7 Intron 0.32 TCGA-3C-AALI-01 10 44112428 44112428 C G ZNF485 Missense_Mutation p.L313V 0.45 deleterious(0.05) probably_damaging(0.914) TCGA-3C-AALI-01 10 45499399 45499399 C T ZNF22 Missense_Mutation p.R195C 0.18 deleterious(0.02) benign(0) TCGA-3C-AALI-01 10 55581652 55581652 T C PCDH15 Missense_Mutation p.E1947G 0.14 tolerated_low_confidence(0.32) unknown(0) TCGA-3C-AALI-01 10 70405670 70405670 G A TET1 Missense_Mutation p.D1062N 0.36 tolerated(0.2) benign(0.025) TCGA-3C-AALI-01 10 71005844 71005844 G C HKDC1 Missense_Mutation p.K295N 0.29 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 10 92672665 92672665 G A ANKRD1 Silent p.L306L 0.32 TCGA-3C-AALI-01 10 93272482 93272482 G A HECTD2 3'UTR 0.29 TCGA-3C-AALI-01 10 93809678 93809678 C - CPEB3 3'UTR 0.28 TCGA-3C-AALI-01 10 94405343 94405343 G A KIF11 Missense_Mutation p.E831K 0.27 tolerated(0.18) benign(0.004) TCGA-3C-AALI-01 11 10624784 10624784 G C MRVI1 Silent p.L586L 0.14 TCGA-3C-AALI-01 11 108013243 108013243 G T ACAT1 Missense_Mutation p.K302N 0.12 tolerated(0.12) benign(0.002) TCGA-3C-AALI-01 11 111167383 111167383 G A COLCA1 5'UTR 0.26 TCGA-3C-AALI-01 11 111945031 111945031 C G C11orf57 5'Flank 0.19 TCGA-3C-AALI-01 11 125770195 125770195 G C HYLS1 3'UTR 0.47 TCGA-3C-AALI-01 11 130784750 130784750 C T SNX19 Missense_Mutation p.R362Q 0.44 tolerated(0.41) benign(0.032) TCGA-3C-AALI-01 11 132285028 132285028 C G OPCML 3'UTR 0.16 TCGA-3C-AALI-01 11 21594920 21594920 A C NELL1 Missense_Mutation p.M783L 0.22 tolerated(0.12) benign(0.002) TCGA-3C-AALI-01 11 22747946 22747946 G C GAS2 Missense_Mutation p.D126H 0.18 tolerated(0.28) benign(0.219) TCGA-3C-AALI-01 11 2592576 2592576 C T KCNQ1 Missense_Mutation p.S209F 0.12 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 11 33014807 33014807 A T QSER1 3'UTR 0.28 TCGA-3C-AALI-01 11 33106537 33106537 C G CSTF3 3'UTR 0.21 TCGA-3C-AALI-01 11 36520101 36520101 G A TRAF6 Missense_Mutation p.S129F 0.42 deleterious(0) probably_damaging(0.997) TCGA-3C-AALI-01 11 45949734 45949734 C T GYLTL1B Silent p.H587H 0.43 TCGA-3C-AALI-01 11 45955655 45955655 G A PHF21A Missense_Mutation p.S636F 0.19 deleterious(0.01) possibly_damaging(0.62) TCGA-3C-AALI-01 11 47765546 47765546 G C FNBP4 Missense_Mutation p.S472C 0.15 deleterious(0) probably_damaging(0.959) TCGA-3C-AALI-01 11 489997 489997 C G PTDSS2 Missense_Mutation p.F410L 0.25 tolerated(0.45) benign(0.005) TCGA-3C-AALI-01 11 51516077 51516077 G C OR4C46 Missense_Mutation p.D266H 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-3C-AALI-01 11 55607088 55607088 G C OR5D16 Missense_Mutation p.L287F 0.19 deleterious(0) probably_damaging(0.972) TCGA-3C-AALI-01 11 5687265 5687265 G C TRIM5 Missense_Mutation p.Q272E 0.23 tolerated(1) benign(0.028) TCGA-3C-AALI-01 11 57116176 57116176 G A P2RX3 Silent p.E187E 0.42 TCGA-3C-AALI-01 11 57576910 57576910 G A CTNND1 Missense_Mutation p.E803K 0.34 deleterious(0.01) possibly_damaging(0.557) TCGA-3C-AALI-01 11 59224961 59224961 C A OR4D6 Silent p.A176A 0.15 TCGA-3C-AALI-01 11 61278112 61278112 G C LRRC10B 3'UTR 0.16 TCGA-3C-AALI-01 11 61571225 61571225 C T FADS1 Missense_Mutation p.M356I 0.12 tolerated(0.33) benign(0.03) TCGA-3C-AALI-01 11 6190743 6190743 G C OR52B2 Missense_Mutation p.Q272E 0.23 tolerated(0.42) benign(0.03) TCGA-3C-AALI-01 11 62298039 62298039 C T AHNAK Missense_Mutation p.D1284N 0.16 benign(0.373) TCGA-3C-AALI-01 11 62483046 62483046 C T HNRNPUL2 Missense_Mutation p.D697N 0.19 tolerated(0.33) possibly_damaging(0.539) TCGA-3C-AALI-01 11 62748845 62748845 C T SLC22A6 Missense_Mutation p.E270K 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-3C-AALI-01 11 63176208 63176208 C T SLC22A9 Silent p.L486L 0.21 TCGA-3C-AALI-01 11 63398662 63398662 G A ATL3 Silent p.F463F 0.26 TCGA-3C-AALI-01 11 63755840 63755840 C T OTUB1 Silent p.I30I 0.19 TCGA-3C-AALI-01 11 63765124 63765124 C T OTUB1 3'UTR 0.33 TCGA-3C-AALI-01 11 64662630 64662630 C T ATG2A Missense_Mutation p.E1878K 0.21 deleterious(0) probably_damaging(0.987) TCGA-3C-AALI-01 11 64664918 64664918 C T ATG2A Missense_Mutation p.E1706K 0.47 deleterious(0) probably_damaging(0.986) TCGA-3C-AALI-01 11 65767136 65767136 G A EIF1AD Silent p.L69L 0.29 TCGA-3C-AALI-01 11 66358129 66358129 G A CCDC87 Silent p.L786L 0.20 TCGA-3C-AALI-01 11 70282323 70282323 C T CTTN Intron 0.19 TCGA-3C-AALI-01 11 70315395 70315395 G C SHANK2 3'Flank 0.18 TCGA-3C-AALI-01 11 71944553 71944553 C T INPPL1 Silent p.I703I 0.24 TCGA-3C-AALI-01 11 72421432 72421432 C G ARAP1 Missense_Mutation p.E472Q 0.06 tolerated(0.87) benign(0.021) TCGA-3C-AALI-01 11 72466047 72466047 C T STARD10 Silent p.A257A 0.51 TCGA-3C-AALI-01 11 75152334 75152334 C G GDPD5 Silent p.L449L 0.10 TCGA-3C-AALI-01 11 76831818 76831818 C T CAPN5 Silent p.I450I 0.25 TCGA-3C-AALI-01 11 94802044 94802044 G T SRSF8 3'UTR 0.29 TCGA-3C-AALI-01 12 10149874 10149874 G T CLEC1B Silent p.V56V 0.20 TCGA-3C-AALI-01 12 104208793 104208793 G T NT5DC3 Nonsense_Mutation p.Y105* 0.19 TCGA-3C-AALI-01 12 10573000 10573000 C T KLRC3 Silent p.L50L 0.19 TCGA-3C-AALI-01 12 109277494 109277494 C T DAO Intron 0.32 TCGA-3C-AALI-01 12 10978708 10978708 C G TAS2R10 Missense_Mutation p.R54T 0.17 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 12 113710490 113710490 C T TPCN1 Missense_Mutation p.S331L 0.18 tolerated(0.17) benign(0.287) TCGA-3C-AALI-01 12 113722420 113722420 C T TPCN1 Silent p.L531L 0.16 TCGA-3C-AALI-01 12 118105350 118105350 G C KSR2 Missense_Mutation p.S367C 0.24 tolerated(0.12) possibly_damaging(0.846) TCGA-3C-AALI-01 12 120779296 120779296 C T MSI1 3'UTR 0.16 TCGA-3C-AALI-01 12 121151074 121151074 C G UNC119B Intron 0.17 TCGA-3C-AALI-01 12 121201918 121201918 C G SPPL3 3'UTR 0.21 TCGA-3C-AALI-01 12 123186587 123186587 A C HCAR2 3'UTR 0.16 TCGA-3C-AALI-01 12 130847368 130847368 A T PIWIL1 Missense_Mutation p.K676N 0.18 deleterious(0.01) benign(0.271) TCGA-3C-AALI-01 12 132404600 132404600 C T ULK1 Silent p.F960F 0.47 TCGA-3C-AALI-01 12 13764661 13764661 C G GRIN2B Missense_Mutation p.R593T 0.06 deleterious(0) benign(0.008) TCGA-3C-AALI-01 12 24987691 24987691 G T BCAT1 Intron 0.23 TCGA-3C-AALI-01 12 29604485 29604485 C A OVCH1 Nonsense_Mutation p.E850* 0.22 TCGA-3C-AALI-01 12 30881691 30881691 G C CAPRIN2 Missense_Mutation p.S558C 0.25 deleterious(0.04) possibly_damaging(0.698) TCGA-3C-AALI-01 12 31265961 31265961 G A RP11-551L14.1 RNA 0.24 TCGA-3C-AALI-01 12 432294 432294 G A KDM5A Silent p.V743V 0.18 TCGA-3C-AALI-01 12 48477419 48477419 C T SENP1 Silent p.L169L 0.30 TCGA-3C-AALI-01 12 49087297 49087297 G C CCNT1 Missense_Mutation p.S567C 0.17 deleterious(0.02) possibly_damaging(0.838) TCGA-3C-AALI-01 12 49099568 49099568 G A CCNT1 Missense_Mutation p.P119S 0.45 tolerated(0.84) benign(0.072) TCGA-3C-AALI-01 12 49250959 49250959 A C RND1 3'UTR 0.20 TCGA-3C-AALI-01 12 53228028 53228028 G A KRT79 Missense_Mutation p.S6F 0.24 deleterious(0) possibly_damaging(0.58) TCGA-3C-AALI-01 12 54332693 54332693 G C HOXC13 Translation_Start_Site p.M1? 0.48 deleterious(0) possibly_damaging(0.885) TCGA-3C-AALI-01 12 56215840 56215840 G C DNAJC14 Missense_Mutation p.S677C 0.27 deleterious(0.01) possibly_damaging(0.474) TCGA-3C-AALI-01 12 56397653 56397653 G C SUOX Silent p.L160L 0.21 TCGA-3C-AALI-01 12 56398523 56398523 G T SUOX Missense_Mutation p.W450C 0.23 deleterious(0) probably_damaging(0.998) TCGA-3C-AALI-01 12 56739938 56739938 G C STAT2 Silent p.V698V 0.23 TCGA-3C-AALI-01 12 56994172 56994172 C T BAZ2A Missense_Mutation p.E1571K 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-3C-AALI-01 12 58113919 58113919 C T OS9 Silent p.T546T 0.21 TCGA-3C-AALI-01 12 58174379 58174379 G A METTL21B Missense_Mutation p.E211K 0.14 tolerated(0.56) benign(0.002) TCGA-3C-AALI-01 12 6138510 6138510 G T VWF Missense_Mutation p.Q989K 0.14 tolerated(0.65) benign(0.053) TCGA-3C-AALI-01 12 6456957 6456957 G A SCNN1A 3'UTR 0.19 TCGA-3C-AALI-01 12 64821869 64821869 G C XPOT Missense_Mutation p.R569T 0.21 deleterious(0.01) possibly_damaging(0.556) TCGA-3C-AALI-01 12 6554559 6554559 C T CD27 Intron 0.17 TCGA-3C-AALI-01 12 77157979 77157979 C T ZDHHC17 5'UTR 0.16 TCGA-3C-AALI-01 12 78513604 78513604 G A NAV3 Missense_Mutation p.E1210K 0.24 deleterious(0.03) benign(0.366) TCGA-3C-AALI-01 12 7947059 7947059 A - NANOG Frame_Shift_Del p.T141Pfs*8 0.11 TCGA-3C-AALI-01 12 80168896 80168896 C T PPP1R12A 3'UTR 0.41 TCGA-3C-AALI-01 12 9244009 9244009 C T A2M Missense_Mutation p.E753K 0.18 deleterious(0.01) benign(0.403) TCGA-3C-AALI-01 12 9720468 9720468 C T RP11-726G1.1 RNA 0.43 TCGA-3C-AALI-01 13 103527919 103527919 C T ERCC5 Missense_Mutation p.S1076L 0.33 tolerated(0.13) benign(0.085) TCGA-3C-AALI-01 13 20656222 20656222 G C ZMYM2 Missense_Mutation p.E1174Q 0.29 deleterious(0) probably_damaging(0.99) TCGA-3C-AALI-01 13 25479739 25479739 G T CENPJ Missense_Mutation p.L813I 0.28 tolerated(0.09) benign(0.295) TCGA-3C-AALI-01 13 27845035 27845035 G A RASL11A 5'UTR 0.50 TCGA-3C-AALI-01 13 36048353 36048353 C T MAB21L1 3'UTR 0.33 TCGA-3C-AALI-01 13 45980030 45980030 C T SLC25A30 Missense_Mutation p.E99K 0.28 tolerated(0.34) benign(0.005) TCGA-3C-AALI-01 13 48612043 48612043 G A NUDT15 Intron 0.35 TCGA-3C-AALI-01 13 49781271 49781271 G A FNDC3A Missense_Mutation p.E1113K 0.23 deleterious(0.03) benign(0.065) TCGA-3C-AALI-01 13 50586412 50586412 G A TRIM13 Silent p.L115L 0.37 TCGA-3C-AALI-01 13 50588668 50588668 G C TRIM13 3'Flank 0.31 TCGA-3C-AALI-01 13 50588873 50588873 G C TRIM13 3'Flank 0.27 TCGA-3C-AALI-01 13 50589360 50589360 G C TRIM13 3'Flank 0.19 TCGA-3C-AALI-01 13 50591143 50591143 G A TRIM13 3'Flank 0.28 TCGA-3C-AALI-01 13 51952496 51952496 G A INTS6 Missense_Mutation p.S494L 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-3C-AALI-01 13 72049859 72049859 C T DACH1 Missense_Mutation p.D667N 0.15 possibly_damaging(0.772) TCGA-3C-AALI-01 13 99896867 99896867 G C UBAC2 Missense_Mutation p.L126F 0.32 tolerated(0.13) benign(0.186) TCGA-3C-AALI-01 14 102028809 102028809 G A DIO3 3'UTR 0.15 TCGA-3C-AALI-01 14 102471496 102471496 G A DYNC1H1 Missense_Mutation p.E1786K 0.46 benign(0.006) TCGA-3C-AALI-01 14 102514888 102514888 G C DYNC1H1 Missense_Mutation p.K4418N 0.58 benign(0.002) TCGA-3C-AALI-01 14 104571705 104571705 C T ASPG Missense_Mutation p.S364L 0.21 tolerated(0.24) benign(0.001) TCGA-3C-AALI-01 14 105071094 105071094 G A TMEM179 5'UTR 0.46 TCGA-3C-AALI-01 14 21559608 21559608 G A ZNF219 Missense_Mutation p.S509L 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-3C-AALI-01 14 21841535 21841535 C G SUPT16H Missense_Mutation p.D41H 0.13 deleterious(0) probably_damaging(0.99) TCGA-3C-AALI-01 14 22434072 22434072 C G TRAV12-3 Missense_Mutation p.S42C 0.24 deleterious(0.05) probably_damaging(0.927) TCGA-3C-AALI-01 14 22459067 22459067 G C TRAV16 Missense_Mutation p.E73D 0.13 tolerated(1) benign(0.003) TCGA-3C-AALI-01 14 36302296 36302296 C T BRMS1L Missense_Mutation p.R116C 0.24 deleterious(0) probably_damaging(0.996) TCGA-3C-AALI-01 14 39868575 39868575 C T FBXO33 3'UTR 0.24 TCGA-3C-AALI-01 14 50704300 50704300 C A L2HGDH 3'UTR 0.16 TCGA-3C-AALI-01 14 50704389 50704389 A G L2HGDH Silent p.S417S 0.08 TCGA-3C-AALI-01 14 53569751 53569751 G C DDHD1 Intron 0.20 TCGA-3C-AALI-01 14 53619024 53619024 C G DDHD1 Missense_Mutation p.E265Q 0.19 tolerated(0.07) benign(0.394) TCGA-3C-AALI-01 14 56757164 56757164 G A PELI2 Missense_Mutation p.R229Q 0.27 deleterious(0.05) possibly_damaging(0.722) TCGA-3C-AALI-01 14 57675067 57675067 G T EXOC5 3'UTR 0.23 TCGA-3C-AALI-01 14 60582075 60582075 G A PCNXL4 Missense_Mutation p.R184Q 0.35 tolerated(0.11) benign(0.087) TCGA-3C-AALI-01 14 61442807 61442807 G C TRMT5 Nonsense_Mutation p.S277* 0.09 TCGA-3C-AALI-01 14 65878661 65878661 C T FUT8 5'UTR 0.12 TCGA-3C-AALI-01 14 69890850 69890850 C T SLC39A9 Missense_Mutation p.L46F 0.46 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 14 74486117 74486117 G C CCDC176 5'UTR 0.28 TCGA-3C-AALI-01 14 74531872 74531872 C G CCDC176 3'UTR 0.27 TCGA-3C-AALI-01 14 75302870 75302870 A G YLPM1 3'UTR 0.38 TCGA-3C-AALI-01 14 76117936 76117936 C G C14orf1 Missense_Mutation p.E129Q 0.33 tolerated(0.09) benign(0.004) TCGA-3C-AALI-01 14 89210370 89210370 G C EML5 Missense_Mutation p.I174M 0.20 tolerated(0.09) benign(0.248) TCGA-3C-AALI-01 14 89623538 89623538 C A FOXN3 3'UTR 0.12 TCGA-3C-AALI-01 14 91360759 91360759 C T RPS6KA5 Missense_Mutation p.E548K 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-3C-AALI-01 14 92336512 92336512 C G FBLN5 3'UTR 0.24 TCGA-3C-AALI-01 14 93412799 93412799 C T ITPK1 Missense_Mutation p.E260K 0.54 tolerated(0.08) benign(0.283) TCGA-3C-AALI-01 14 93712340 93712340 C T BTBD7 Missense_Mutation p.R805K 0.10 tolerated_low_confidence(0.24) benign(0.039) TCGA-3C-AALI-01 15 40623912 40623912 C T C15orf52 3'Flank 0.59 TCGA-3C-AALI-01 15 44900657 44900657 G C SPG11 Missense_Mutation p.I1146M 0.18 deleterious(0) benign(0.001) TCGA-3C-AALI-01 15 45399615 45399615 G A DUOX2 Missense_Mutation p.R541W 0.19 tolerated(0.16) benign(0.025) TCGA-3C-AALI-01 15 48707877 48707877 C T FBN1 Missense_Mutation p.G2636D 0.23 probably_damaging(1) TCGA-3C-AALI-01 15 49620852 49620852 C T FAM227B Silent p.E480E 0.23 TCGA-3C-AALI-01 15 55931849 55931849 T C PRTG Missense_Mutation p.Y772C 0.31 deleterious(0) probably_damaging(0.997) TCGA-3C-AALI-01 15 55964828 55964828 G C PRTG Missense_Mutation p.P619R 0.20 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 15 56032722 56032722 G A PRTG Silent p.I85I 0.56 TCGA-3C-AALI-01 15 56726478 56726478 C T MNS1 Missense_Mutation p.R376K 0.19 tolerated(0.14) benign(0.133) TCGA-3C-AALI-01 15 57967233 57967233 G C GCOM1 Missense_Mutation p.R424T 0.12 tolerated(0.07) possibly_damaging(0.646) TCGA-3C-AALI-01 15 59450511 59450511 T C MYO1E Silent p.P951P 0.50 TCGA-3C-AALI-01 15 64388209 64388209 G A SNX1 5'UTR 0.16 TCGA-3C-AALI-01 15 69072257 69072257 C A ANP32A 3'UTR 0.68 TCGA-3C-AALI-01 15 72410106 72410106 G A MYO9A 5'UTR 0.24 TCGA-3C-AALI-01 15 72699090 72699090 C G TMEM202 Nonsense_Mutation p.S162* 0.24 TCGA-3C-AALI-01 15 72957329 72957329 C A GOLGA6B Silent p.R516R 0.13 TCGA-3C-AALI-01 15 73428370 73428370 T C NEO1 Splice_Site p.X339_splice 0.63 TCGA-3C-AALI-01 15 77777788 77777788 G C HMG20A 3'UTR 0.20 TCGA-3C-AALI-01 15 79089071 79089071 C T ADAMTS7 Missense_Mutation p.R227Q 0.33 tolerated(0.57) benign(0.004) TCGA-3C-AALI-01 15 83349453 83349453 C T AP3B2 Missense_Mutation p.E276K 0.24 tolerated(0.16) benign(0.168) TCGA-3C-AALI-01 15 85326988 85326988 C T ZNF592 Missense_Mutation p.S361L 0.27 deleterious(0) probably_damaging(0.993) TCGA-3C-AALI-01 15 85383097 85383097 T A ALPK3 Missense_Mutation p.I398N 0.27 deleterious(0.02) possibly_damaging(0.862) TCGA-3C-AALI-01 15 89868836 89868836 G A POLG Silent p.V598V 0.31 TCGA-3C-AALI-01 15 91293192 91293192 A T BLM Missense_Mutation p.S232C 0.25 deleterious(0) possibly_damaging(0.711) TCGA-3C-AALI-01 15 92694221 92694221 T C SLCO3A1 Missense_Mutation p.L577P 0.06 deleterious(0.05) probably_damaging(0.994) TCGA-3C-AALI-01 15 99434812 99434812 A G IGF1R Missense_Mutation p.D300G 0.23 tolerated(0.34) benign(0.001) TCGA-3C-AALI-01 16 10788471 10788471 G C TEKT5 Missense_Mutation p.S87C 0.28 tolerated(0.3) benign(0.005) TCGA-3C-AALI-01 16 15797747 15797747 C T MYH11 3'UTR 0.09 TCGA-3C-AALI-01 16 18872003 18872003 G C SMG1 Nonsense_Mutation p.S1264* 0.05 TCGA-3C-AALI-01 16 19127388 19127388 G A ITPRIPL2 Silent p.P535P 0.09 TCGA-3C-AALI-01 16 19191832 19191832 C G SYT17 Missense_Mutation p.S101C 0.06 deleterious(0.03) possibly_damaging(0.541) TCGA-3C-AALI-01 16 20781408 20781408 C T ACSM3 Missense_Mutation p.R18C 0.29 tolerated(0.19) benign(0.001) TCGA-3C-AALI-01 16 2259588 2259588 C T BRICD5 Missense_Mutation p.M186I 0.29 tolerated(0.11) benign(0.001) TCGA-3C-AALI-01 16 23224170 23224170 G A SCNN1G Nonsense_Mutation p.W462* 0.07 TCGA-3C-AALI-01 16 23646726 23646726 G C PALB2 Missense_Mutation p.L381V 0.34 tolerated(0.19) benign(0.073) TCGA-3C-AALI-01 16 23690592 23690592 C T PLK1 Silent p.V113V 0.59 TCGA-3C-AALI-01 16 28878669 28878669 C G SH2B1 Silent p.L319L 0.11 TCGA-3C-AALI-01 16 28922443 28922443 C T RABEP2 Missense_Mutation p.E318K 0.09 deleterious(0.01) benign(0.005) TCGA-3C-AALI-01 16 30435835 30435835 C T DCTPP1 Missense_Mutation p.E78K 0.15 tolerated(0.43) benign(0.006) TCGA-3C-AALI-01 16 30736362 30736362 C T SRCAP Nonsense_Mutation p.R1873* 0.12 TCGA-3C-AALI-01 16 30749331 30749331 C A SRCAP Nonsense_Mutation p.S2657* 0.54 TCGA-3C-AALI-01 16 31191502 31191502 C T FUS 5'UTR 0.16 TCGA-3C-AALI-01 16 48232076 48232076 C T ABCC11 Silent p.Q731Q 0.41 TCGA-3C-AALI-01 16 48292637 48292637 G C LONP2 Missense_Mutation p.D237H 0.17 tolerated(0.08) possibly_damaging(0.789) TCGA-3C-AALI-01 16 50349305 50349305 C T ADCY7 Silent p.L1044L 0.43 TCGA-3C-AALI-01 16 53860211 53860211 G A FTO Missense_Mutation p.G187R 0.27 tolerated(0.52) benign(0.015) TCGA-3C-AALI-01 16 58426556 58426556 G C GINS3 Missense_Mutation p.E17D 0.28 tolerated(0.22) benign(0.028) TCGA-3C-AALI-01 16 58554820 58554820 G A CNOT1 3'UTR 0.24 TCGA-3C-AALI-01 16 629101 629101 C G PIGQ Nonsense_Mutation p.S419* 0.09 TCGA-3C-AALI-01 16 67671650 67671650 G A CTCF Missense_Mutation p.E687K 0.13 tolerated_low_confidence(0.46) benign(0) TCGA-3C-AALI-01 16 68404765 68404765 G A SMPD3 Silent p.L440L 0.23 TCGA-3C-AALI-01 16 69355042 69355042 C G VPS4A Missense_Mutation p.L314V 0.23 deleterious(0) benign(0.384) TCGA-3C-AALI-01 16 69375481 69375481 G C NIP7 Missense_Mutation p.D157H 0.07 deleterious(0.01) probably_damaging(0.936) TCGA-3C-AALI-01 16 70866971 70866971 C A HYDIN Splice_Site p.X4560_splice 0.25 TCGA-3C-AALI-01 16 81944182 81944182 G A PLCG2 Silent p.L597L 0.20 TCGA-3C-AALI-01 16 83991284 83991284 C G OSGIN1 Missense_Mutation p.S3C 0.08 deleterious_low_confidence(0.04) benign(0.091) TCGA-3C-AALI-01 16 84157343 84157343 C T HSDL1 3'UTR 0.19 TCGA-3C-AALI-01 16 84158198 84158198 C T HSDL1 3'UTR 0.28 TCGA-3C-AALI-01 16 88497432 88497432 G A ZNF469 Missense_Mutation p.R1157K 0.24 benign(0.088) TCGA-3C-AALI-01 16 89704550 89704550 G A DPEP1 Missense_Mutation p.G386R 0.52 tolerated(0.22) benign(0.002) TCGA-3C-AALI-01 16 90162396 90162396 C G TUBB8P7 RNA 0.25 TCGA-3C-AALI-01 17 11511493 11511493 C A DNAH9 Silent p.P155P 0.36 TCGA-3C-AALI-01 17 12905659 12905659 G A ELAC2 Silent p.L412L 0.53 TCGA-3C-AALI-01 17 13399952 13399952 G A HS3ST3A1 Silent p.P261P 0.40 TCGA-3C-AALI-01 17 16455539 16455539 C G ZNF287 Missense_Mutation p.Q639H 0.27 deleterious(0.02) benign(0.004) TCGA-3C-AALI-01 17 17131431 17131431 G C FLCN Silent p.L7L 0.24 TCGA-3C-AALI-01 17 19091387 19091387 G A SNORD3A RNA 0.10 TCGA-3C-AALI-01 17 25938592 25938592 G C KSR1 Missense_Mutation p.Q695H 0.28 deleterious(0) probably_damaging(0.978) TCGA-3C-AALI-01 17 26667353 26667353 G A TNFAIP1 Missense_Mutation p.R75H 0.12 deleterious(0) probably_damaging(0.993) TCGA-3C-AALI-01 17 26726806 26726806 T G SARM1 3'UTR 0.09 TCGA-3C-AALI-01 17 26962007 26962007 G C KIAA0100 Silent p.L866L 0.08 TCGA-3C-AALI-01 17 27441107 27441107 G C MYO18A Missense_Mutation p.I840M 0.05 deleterious(0) probably_damaging(0.978) TCGA-3C-AALI-01 17 27613742 27613742 C G NUFIP2 Missense_Mutation p.D424H 0.06 deleterious(0.01) possibly_damaging(0.824) TCGA-3C-AALI-01 17 27899242 27899242 C G TP53I13 Missense_Mutation p.S199C 0.16 deleterious(0.01) possibly_damaging(0.694) TCGA-3C-AALI-01 17 27901527 27901527 C G GIT1 3'UTR 0.10 TCGA-3C-AALI-01 17 27935101 27935101 C A ANKRD13B Silent p.I116I 0.08 TCGA-3C-AALI-01 17 28512687 28512687 G C NSRP1 Missense_Mutation p.D558H 0.24 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 17 32612779 32612779 C A CCL11 5'UTR 0.10 TCGA-3C-AALI-01 17 32646496 32646496 G T CCL8 5'UTR 0.11 TCGA-3C-AALI-01 17 32961817 32961817 G T TMEM132E Splice_Site p.X473_splice 0.18 TCGA-3C-AALI-01 17 33849496 33849496 T C SLFN12L 5'UTR 0.11 TCGA-3C-AALI-01 17 34072175 34072175 G A GAS2L2 Missense_Mutation p.R781W 0.13 deleterious(0) probably_damaging(0.919) TCGA-3C-AALI-01 17 34797248 34797248 C G TBC1D3G 3'UTR 0.13 TCGA-3C-AALI-01 17 34958516 34958516 G A MRM1 Missense_Mutation p.E93K 0.10 tolerated(0.17) benign(0.183) TCGA-3C-AALI-01 17 35443874 35443874 C T ACACA 3'UTR 0.07 TCGA-3C-AALI-01 17 36484264 36484264 C T GPR179 Missense_Mutation p.D1730N 0.05 tolerated(0.14) benign(0.006) TCGA-3C-AALI-01 17 36484277 36484277 C T GPR179 Silent p.R1725R 0.04 TCGA-3C-AALI-01 17 36486833 36486833 C T GPR179 Silent p.K873K 0.06 TCGA-3C-AALI-01 17 36520735 36520735 C G SOCS7 Silent p.L318L 0.05 TCGA-3C-AALI-01 17 37009948 37009948 C G RPL23 Intron 0.09 TCGA-3C-AALI-01 17 37353680 37353680 G A CACNB1 Silent p.F23F 0.07 TCGA-3C-AALI-01 17 37374152 37374152 C G STAC2 Missense_Mutation p.S122T 0.15 tolerated(1) benign(0.006) TCGA-3C-AALI-01 17 37809858 37809858 C G STARD3 Nonsense_Mutation p.S25* 0.03 TCGA-3C-AALI-01 17 38173604 38173604 C T CSF3 3'UTR 0.83 TCGA-3C-AALI-01 17 38547887 38547887 C T TOP2A Missense_Mutation p.E1380K 0.47 tolerated(0.53) benign(0.005) TCGA-3C-AALI-01 17 4068320 4068320 C T ANKFY1 3'Flank 0.38 TCGA-3C-AALI-01 17 42635420 42635420 G A FZD2 Missense_Mutation p.E122K 0.13 deleterious(0.04) possibly_damaging(0.883) TCGA-3C-AALI-01 17 46019058 46019058 G C PNPO Missense_Mutation p.R6P 0.09 deleterious_low_confidence(0.03) benign(0.307) TCGA-3C-AALI-01 17 46190733 46190733 G C SNX11 Missense_Mutation p.R67T 0.03 deleterious(0) possibly_damaging(0.785) TCGA-3C-AALI-01 17 46620308 46620308 C A HOXB2 3'UTR 0.04 TCGA-3C-AALI-01 17 46673847 46673847 C T HOXB6 Nonsense_Mutation p.W201* 0.17 TCGA-3C-AALI-01 17 46993516 46993516 G C UBE2Z Missense_Mutation p.E219D 0.04 tolerated(0.1) possibly_damaging(0.465) TCGA-3C-AALI-01 17 47284731 47284731 C T GNGT2 Silent p.L18L 0.04 TCGA-3C-AALI-01 17 48154335 48154335 C T ITGA3 Intron 0.09 TCGA-3C-AALI-01 17 48271733 48271733 C T COL1A1 Missense_Mutation p.E531K 0.06 unknown(0) TCGA-3C-AALI-01 17 48545910 48545910 C T CHAD Missense_Mutation p.E89K 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-3C-AALI-01 17 48683330 48683330 C T CACNA1G Silent p.A1456A 0.07 TCGA-3C-AALI-01 17 48750438 48750438 C G ABCC3 Missense_Mutation p.S783C 0.03 deleterious(0) possibly_damaging(0.853) TCGA-3C-AALI-01 17 49238535 49238535 G A NME1 Silent p.L106L 0.04 TCGA-3C-AALI-01 17 49371325 49371325 C G UTP18 Missense_Mutation p.S522C 0.03 tolerated(0.14) possibly_damaging(0.887) TCGA-3C-AALI-01 17 50235393 50235393 C T CA10 5'UTR 0.06 TCGA-3C-AALI-01 17 5039205 5039205 G A USP6 Missense_Mutation p.E216K 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-3C-AALI-01 17 53398100 53398100 G C HLF Missense_Mutation p.E250Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 17 55123555 55123555 G A RNF126P1 RNA 0.04 TCGA-3C-AALI-01 17 55123837 55123837 G C RNF126P1 RNA 0.07 TCGA-3C-AALI-01 17 57288693 57288693 C T SMG8 Silent p.F427F 0.15 TCGA-3C-AALI-01 17 57650576 57650576 C A DHX40 Missense_Mutation p.H176N 0.07 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 17 57761305 57761305 G A CLTC Missense_Mutation p.E1465K 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-3C-AALI-01 17 57917421 57917421 A G VMP1 3'UTR 0.10 TCGA-3C-AALI-01 17 60679436 60679436 G C TLK2 Missense_Mutation p.G585A 0.03 deleterious(0) probably_damaging(0.996) TCGA-3C-AALI-01 17 61899393 61899393 C G FTSJ3 Missense_Mutation p.E476Q 0.03 deleterious(0.02) benign(0.267) TCGA-3C-AALI-01 17 61909314 61909314 G C PSMC5 Missense_Mutation p.K402N 0.05 tolerated(0.12) benign(0.24) TCGA-3C-AALI-01 17 61910089 61910089 G A SMARCD2 3'UTR 0.04 TCGA-3C-AALI-01 17 62502267 62502267 G A DDX5 5'UTR 0.05 TCGA-3C-AALI-01 17 62859145 62859145 G A LRRC37A3 Intron 0.12 TCGA-3C-AALI-01 17 62971165 62971165 C G AMZ2P1 RNA 0.15 TCGA-3C-AALI-01 17 62971221 62971221 C T AMZ2P1 RNA 0.13 TCGA-3C-AALI-01 17 62971395 62971395 C G AMZ2P1 RNA 0.04 TCGA-3C-AALI-01 17 62971451 62971451 C T AMZ2P1 RNA 0.10 TCGA-3C-AALI-01 17 6493901 6493901 G T KIAA0753 Silent p.I830I 0.22 TCGA-3C-AALI-01 17 65069485 65069485 G A HELZ 3'UTR 0.02 TCGA-3C-AALI-01 17 6547712 6547712 C T MED31 3'UTR 0.50 TCGA-3C-AALI-01 17 65979603 65979603 C T BPTF 3'Flank 0.04 TCGA-3C-AALI-01 17 66879961 66879961 C G ABCA8 Missense_Mutation p.K1186N 0.33 tolerated(0.06) benign(0.167) TCGA-3C-AALI-01 17 7156263 7156263 G A ELP5 Missense_Mutation p.C61Y 0.35 tolerated(0.38) possibly_damaging(0.879) TCGA-3C-AALI-01 17 72297242 72297242 A T DNAI2 Missense_Mutation p.I308F 0.27 tolerated(0.18) benign(0.04) TCGA-3C-AALI-01 17 7251673 7251673 C G ACAP1 Missense_Mutation p.F519L 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-3C-AALI-01 17 7297107 7297107 G C TMEM256-PLSCR3 Missense_Mutation p.P19R 0.50 deleterious(0.01) unknown(0) TCGA-3C-AALI-01 17 73888880 73888880 C T TRIM65 Missense_Mutation p.E156K 0.23 tolerated(0.34) benign(0.009) TCGA-3C-AALI-01 17 74290026 74290026 C G QRICH2 Missense_Mutation p.G95A 0.23 tolerated(0.17) benign(0.29) TCGA-3C-AALI-01 17 74533556 74533556 C G CYGB Missense_Mutation p.E23D 0.24 tolerated(0.41) probably_damaging(0.985) TCGA-3C-AALI-01 17 74730953 74730954 - AG SRSF2 3'UTR 0.14 TCGA-3C-AALI-01 17 7493085 7493085 G C SOX15 5'UTR 0.31 TCGA-3C-AALI-01 17 7578382 7578382 G T TP53 Nonsense_Mutation p.S183* 0.65 TCGA-3C-AALI-01 17 7794285 7794285 C T CHD3 Silent p.L197L 0.62 TCGA-3C-AALI-01 17 78120720 78120720 C T EIF4A3 Missense_Mutation p.R14Q 0.26 tolerated_low_confidence(0.08) probably_damaging(0.953) TCGA-3C-AALI-01 17 79419869 79419869 G A RP11-1055B8.7 Silent p.K1479K 0.21 TCGA-3C-AALI-01 17 79868881 79868881 C T PCYT2 Intron 0.22 TCGA-3C-AALI-01 17 79986503 79986503 G T LRRC45 Nonsense_Mutation p.E418* 0.10 TCGA-3C-AALI-01 17 80151956 80151956 C G CCDC57 Missense_Mutation p.E226D 0.15 deleterious(0.03) probably_damaging(0.983) TCGA-3C-AALI-01 18 13438325 13438325 C T LDLRAD4 Silent p.N41N 0.32 TCGA-3C-AALI-01 18 18534850 18534850 G C ROCK1 Silent p.L1249L 0.08 TCGA-3C-AALI-01 18 43446823 43446823 G A EPG5 Silent p.I2187I 0.54 TCGA-3C-AALI-01 18 56010305 56010305 C T NEDD4L Silent p.F515F 0.36 TCGA-3C-AALI-01 18 66506047 66506047 G A CCDC102B Silent p.T237T 0.54 TCGA-3C-AALI-01 18 9258741 9258741 C T ANKRD12 Nonsense_Mutation p.Q1826* 0.66 TCGA-3C-AALI-01 19 10368974 10368974 C G MRPL4 Silent p.L174L 0.17 TCGA-3C-AALI-01 19 10597197 10597197 G A KEAP1 3'UTR 0.24 TCGA-3C-AALI-01 19 10655511 10655511 C G ATG4D Silent p.L96L 0.19 TCGA-3C-AALI-01 19 10655785 10655785 C T ATG4D Silent p.L158L 0.26 TCGA-3C-AALI-01 19 11230824 11230824 C T LDLR Silent p.L634L 0.20 TCGA-3C-AALI-01 19 11558585 11558585 G C PRKCSH Missense_Mutation p.Q362H 0.30 deleterious(0.01) possibly_damaging(0.553) TCGA-3C-AALI-01 19 12089293 12089293 C A ZNF763 Nonsense_Mutation p.S188* 0.21 TCGA-3C-AALI-01 19 13338342 13338342 C T CACNA1A Splice_Site p.X1843_splice 0.25 TCGA-3C-AALI-01 19 13988329 13988329 C T NANOS3 Silent p.I89I 0.15 TCGA-3C-AALI-01 19 14521798 14521798 C T DDX39A Intron 0.22 TCGA-3C-AALI-01 19 15302643 15302643 C T NOTCH3 Missense_Mutation p.D239N 0.23 deleterious(0.02) probably_damaging(0.93) TCGA-3C-AALI-01 19 17369067 17369067 C G USHBP1 Missense_Mutation p.E392Q 0.52 tolerated(0.14) benign(0.218) TCGA-3C-AALI-01 19 17441660 17441660 C T ANO8 Missense_Mutation p.E324K 0.29 deleterious(0.05) benign(0.262) TCGA-3C-AALI-01 19 18280483 18280483 G A PIK3R2 3'UTR 0.22 TCGA-3C-AALI-01 19 18280484 18280484 A T PIK3R2 3'UTR 0.22 TCGA-3C-AALI-01 19 18362906 18362906 G C PDE4C 5'UTR 0.11 TCGA-3C-AALI-01 19 19145029 19145029 G A ARMC6 Missense_Mutation p.R4Q 0.20 tolerated_low_confidence(0.09) unknown(0) TCGA-3C-AALI-01 19 2191121 2191121 C G DOT1L Silent p.L125L 0.29 TCGA-3C-AALI-01 19 2248154 2248154 G C SF3A2 Missense_Mutation p.G335A 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-3C-AALI-01 19 22779082 22779082 C G CTC-457E21.3 RNA 0.06 TCGA-3C-AALI-01 19 30934934 30934934 G A ZNF536 Silent p.E155E 0.24 TCGA-3C-AALI-01 19 31770271 31770271 G A TSHZ3 Missense_Mutation p.S143L 0.33 deleterious(0.01) benign(0.037) TCGA-3C-AALI-01 19 33110275 33110275 T A ANKRD27 Missense_Mutation p.Q633L 0.17 tolerated(0.52) benign(0.069) TCGA-3C-AALI-01 19 35512411 35512411 C G GRAMD1A Missense_Mutation p.S494C 0.17 deleterious(0) possibly_damaging(0.709) TCGA-3C-AALI-01 19 36232139 36232139 G A IGFLR1 Intron 0.15 TCGA-3C-AALI-01 19 36243179 36243179 G A LIN37 Intron 0.19 TCGA-3C-AALI-01 19 36579962 36579962 C G WDR62 Missense_Mutation p.I597M 0.09 deleterious(0) probably_damaging(0.997) TCGA-3C-AALI-01 19 36964321 36964321 G C ZNF566 Missense_Mutation p.Q17E 0.23 deleterious(0.03) benign(0.017) TCGA-3C-AALI-01 19 37427717 37427717 C G ZNF568 Missense_Mutation p.Q69E 0.21 deleterious(0) benign(0.005) TCGA-3C-AALI-01 19 38964261 38964261 C T RYR1 Missense_Mutation p.S1337L 0.52 benign(0.132) TCGA-3C-AALI-01 19 39955454 39955454 C T SUPT5H Missense_Mutation p.S214L 0.67 deleterious(0) probably_damaging(0.996) TCGA-3C-AALI-01 19 40316081 40316081 G - DYRK1B 3'UTR 0.29 TCGA-3C-AALI-01 19 40715015 40715015 G C MAP3K10 Missense_Mutation p.E481Q 0.13 tolerated(1) benign(0.074) TCGA-3C-AALI-01 19 43023236 43023236 C G CEACAM1 Missense_Mutation p.E370D 0.55 tolerated(0.67) benign(0.038) TCGA-3C-AALI-01 19 45860537 45860537 G A ERCC2 Silent p.L490L 0.13 TCGA-3C-AALI-01 19 47542399 47542399 C T NPAS1 Missense_Mutation p.S265L 0.58 deleterious(0) probably_damaging(0.996) TCGA-3C-AALI-01 19 48967750 48967750 G A KCNJ14 Missense_Mutation p.E343K 0.22 tolerated(0.54) benign(0.068) TCGA-3C-AALI-01 19 49654264 49654264 A G PPFIA3 3'UTR 0.59 TCGA-3C-AALI-01 19 51219666 51219666 C G SHANK1 Missense_Mutation p.E109Q 0.12 probably_damaging(0.977) TCGA-3C-AALI-01 19 52033109 52033109 T A SIGLEC6 Missense_Mutation p.N294I 0.17 tolerated(0.23) possibly_damaging(0.675) TCGA-3C-AALI-01 19 52938382 52938382 G C ZNF534 Missense_Mutation p.R77T 0.15 tolerated(0.11) benign(0.03) TCGA-3C-AALI-01 19 54598537 54598537 G C OSCAR 3'UTR 0.16 TCGA-3C-AALI-01 19 54617950 54617950 G A TFPT Silent p.L52L 0.11 TCGA-3C-AALI-01 19 54784150 54784150 C G LILRB2 Silent p.L13L 0.18 TCGA-3C-AALI-01 19 55147833 55147833 G C AC009892.10 Intron 0.26 TCGA-3C-AALI-01 19 55597245 55597245 G A EPS8L1 Silent p.L474L 0.18 TCGA-3C-AALI-01 19 55888267 55888267 C A TMEM190 Missense_Mutation p.Q16K 0.17 tolerated_low_confidence(0.07) unknown(0) TCGA-3C-AALI-01 19 55995255 55995255 G T ZNF628 Nonsense_Mutation p.E899* 0.25 TCGA-3C-AALI-01 19 5616156 5616156 G T SAFB2 Missense_Mutation p.P177H 0.29 tolerated(0.43) possibly_damaging(0.566) TCGA-3C-AALI-01 19 58319841 58319841 C G ZNF552 Missense_Mutation p.R264T 0.58 deleterious(0.01) benign(0.002) TCGA-3C-AALI-01 19 5844362 5844362 G A FUT3 Silent p.S163S 0.28 TCGA-3C-AALI-01 19 58549289 58549289 G A ZSCAN1 Missense_Mutation p.A29T 0.55 deleterious(0.04) possibly_damaging(0.739) TCGA-3C-AALI-01 19 7607779 7607779 G T PNPLA6 Missense_Mutation p.A508S 0.23 deleterious(0.05) possibly_damaging(0.839) TCGA-3C-AALI-01 19 8563906 8563906 C T PRAM1 Silent p.P262P 0.24 TCGA-3C-AALI-01 19 9061676 9061676 C G MUC16 Silent p.V8590V 0.38 TCGA-3C-AALI-01 19 9085461 9085461 C G MUC16 Silent p.A2118A 0.50 TCGA-3C-AALI-01 1 104163259 104163259 C G AMY2A Silent p.L277L 0.23 TCGA-3C-AALI-01 1 11333599 11333599 C G UBIAD1 Missense_Mutation p.S4C 0.26 deleterious_low_confidence(0.03) benign(0.156) TCGA-3C-AALI-01 1 12853485 12853485 C G PRAMEF1 Missense_Mutation p.L37V 0.35 deleterious(0.01) benign(0.288) TCGA-3C-AALI-01 1 149877363 149877363 T A SV2A Intron 0.16 TCGA-3C-AALI-01 1 149877365 149877365 C T SV2A Intron 0.16 TCGA-3C-AALI-01 1 150414363 150414363 C G RPRD2 Missense_Mutation p.T148S 0.24 tolerated_low_confidence(0.18) benign(0.015) TCGA-3C-AALI-01 1 152488471 152488471 C G CRCT1 3'UTR 0.11 TCGA-3C-AALI-01 1 153700974 153700974 G A INTS3 5'UTR 0.24 TCGA-3C-AALI-01 1 155755160 155755160 C T GON4L Missense_Mutation p.E585K 0.35 deleterious(0) probably_damaging(0.953) TCGA-3C-AALI-01 1 15687121 15687121 G A FHAD1 Missense_Mutation p.E175K 0.30 deleterious(0) possibly_damaging(0.664) TCGA-3C-AALI-01 1 158653276 158653276 T C SPTA1 Missense_Mutation p.Q92R 0.52 tolerated(0.06) benign(0.012) TCGA-3C-AALI-01 1 161135394 161135394 C G USP21 3'UTR 0.15 TCGA-3C-AALI-01 1 161519663 161519663 G A FCGR3A 5'UTR 0.21 TCGA-3C-AALI-01 1 16257022 16257022 C A SPEN Missense_Mutation p.N1429K 0.08 benign(0.242) TCGA-3C-AALI-01 1 16907973 16907973 C T NBPF1 Missense_Mutation p.E441K 0.04 tolerated(0.07) probably_damaging(0.992) TCGA-3C-AALI-01 1 173855103 173855103 C A ZBTB37 Missense_Mutation p.N451K 0.17 tolerated(0.28) benign(0.05) TCGA-3C-AALI-01 1 179852063 179852063 G A TOR1AIP1 Silent p.P142P 0.22 TCGA-3C-AALI-01 1 179883144 179883144 C G TOR1AIP1 Missense_Mutation p.L307V 0.14 tolerated(0.07) benign(0.002) TCGA-3C-AALI-01 1 184006834 184006834 C G COLGALT2 5'UTR 0.24 TCGA-3C-AALI-01 1 185892603 185892603 C T HMCN1 Missense_Mutation p.S368L 0.15 possibly_damaging(0.879) TCGA-3C-AALI-01 1 186281495 186281495 C G PRG4 Missense_Mutation p.Q1328E 0.24 unknown(0) TCGA-3C-AALI-01 1 20072953 20072953 C T TMCO4 Silent p.L251L 0.10 TCGA-3C-AALI-01 1 201759685 201759685 G A NAV1 Missense_Mutation p.E1075K 0.23 deleterious(0) probably_damaging(0.94) TCGA-3C-AALI-01 1 202724567 202724567 C T KDM5B Missense_Mutation p.S457N 0.11 deleterious(0) benign(0.093) TCGA-3C-AALI-01 1 202743768 202743768 C G KDM5B Missense_Mutation p.K126N 0.24 deleterious(0.02) probably_damaging(1) TCGA-3C-AALI-01 1 203017816 203017816 G C PPFIA4 5'Flank 0.12 TCGA-3C-AALI-01 1 204375091 204375091 T A PPP1R15B 3'UTR 0.09 TCGA-3C-AALI-01 1 209954726 209954726 G T TRAF3IP3 Missense_Mutation p.D496Y 0.19 deleterious(0) probably_damaging(0.972) TCGA-3C-AALI-01 1 214815454 214815454 T C CENPF Missense_Mutation p.I1258T 0.58 benign(0.058) TCGA-3C-AALI-01 1 223168242 223168242 G C DISP1 Missense_Mutation p.R302T 0.20 deleterious(0) possibly_damaging(0.897) TCGA-3C-AALI-01 1 227261600 227261600 C G CDC42BPA Missense_Mutation p.L900F 0.55 deleterious(0) probably_damaging(0.998) TCGA-3C-AALI-01 1 22902826 22902826 C T EPHA8 Silent p.D92D 0.37 TCGA-3C-AALI-01 1 2336301 2336301 C G PEX10 3'UTR 0.50 TCGA-3C-AALI-01 1 235599753 235599753 G A TBCE Missense_Mutation p.D296N 0.17 deleterious(0.04) possibly_damaging(0.607) TCGA-3C-AALI-01 1 236208785 236208785 C T NID1 Missense_Mutation p.D242N 0.50 tolerated(0.18) benign(0.158) TCGA-3C-AALI-01 1 237655144 237655144 C A RYR2 Missense_Mutation p.P583T 0.15 probably_damaging(1) TCGA-3C-AALI-01 1 245851056 245851056 C G KIF26B Missense_Mutation p.R1591G 0.22 deleterious(0.02) unknown(0) TCGA-3C-AALI-01 1 246887697 246887697 C T SCCPDH 5'UTR 0.16 TCGA-3C-AALI-01 1 247004160 247004160 C G AHCTF1 Missense_Mutation p.R2259T 0.18 deleterious(0.01) possibly_damaging(0.809) TCGA-3C-AALI-01 1 248112668 248112668 C T OR2L8 Missense_Mutation p.S170F 0.17 deleterious(0.01) possibly_damaging(0.7) TCGA-3C-AALI-01 1 248487847 248487847 G C OR2M7 Missense_Mutation p.F8L 0.20 tolerated(0.57) benign(0.013) TCGA-3C-AALI-01 1 248814092 248814092 G A OR2T27 Missense_Mutation p.L32F 0.30 tolerated(1) benign(0.001) TCGA-3C-AALI-01 1 25655570 25655570 C G RHD 3'UTR 0.33 TCGA-3C-AALI-01 1 26802437 26802437 T G HMGN2 3'UTR 0.25 TCGA-3C-AALI-01 1 27681864 27681864 G A MAP3K6 3'UTR 0.29 TCGA-3C-AALI-01 1 31437690 31437690 C G PUM1 Missense_Mutation p.K718N 0.20 deleterious(0.02) probably_damaging(0.936) TCGA-3C-AALI-01 1 33236939 33236939 C T KIAA1522 Missense_Mutation p.S720F 0.36 tolerated_low_confidence(0.11) unknown(0) TCGA-3C-AALI-01 1 33789407 33789407 C T PHC2 3'UTR 0.34 TCGA-3C-AALI-01 1 38187334 38187334 C T EPHA10 Missense_Mutation p.R715Q 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-3C-AALI-01 1 38453288 38453288 C G SF3A3 Missense_Mutation p.R87T 0.29 deleterious(0) probably_damaging(0.977) TCGA-3C-AALI-01 1 44087769 44087769 G A PTPRF 3'UTR 0.29 TCGA-3C-AALI-01 1 46658080 46658080 G A POMGNT1 Missense_Mutation p.A438V 0.42 possibly_damaging(0.524) TCGA-3C-AALI-01 1 51910583 51910583 G A EPS15 Missense_Mutation p.S311L 0.31 deleterious(0) possibly_damaging(0.838) TCGA-3C-AALI-01 1 54431966 54431966 C T LRRC42 Intron 0.38 TCGA-3C-AALI-01 1 55307337 55307337 C T C1orf177 Intron 0.25 TCGA-3C-AALI-01 1 57480804 57480804 G C DAB1 Nonsense_Mutation p.S399* 0.30 TCGA-3C-AALI-01 1 67450299 67450299 G C MIER1 Missense_Mutation p.V472L 0.27 tolerated(0.21) benign(0.005) TCGA-3C-AALI-01 1 67558994 67558994 C G C1orf141 Missense_Mutation p.K299N 0.31 deleterious(0.01) benign(0.01) TCGA-3C-AALI-01 1 78401517 78401517 G C NEXN Missense_Mutation p.E421Q 0.32 tolerated(0.15) possibly_damaging(0.793) TCGA-3C-AALI-01 1 78401664 78401664 G A NEXN Missense_Mutation p.E470K 0.30 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 1 84399296 84399296 G A TTLL7 Silent p.L348L 0.24 TCGA-3C-AALI-01 1 898733 898733 G C KLHL17 Missense_Mutation p.D402H 0.13 tolerated(0.22) probably_damaging(1) TCGA-3C-AALI-01 20 14306370 14306370 G A FLRT3 Nonsense_Mutation p.Q595* 0.26 TCGA-3C-AALI-01 20 20033057 20033057 G A CRNKL1 Missense_Mutation p.S138L 0.16 tolerated_low_confidence(0.08) benign(0) TCGA-3C-AALI-01 20 20341252 20341252 C G C20orf26 3'UTR 0.17 TCGA-3C-AALI-01 20 20599982 20599982 C G RALGAPA2 Missense_Mutation p.R493T 0.15 tolerated(0.1) benign(0.137) TCGA-3C-AALI-01 20 2083902 2083902 C T STK35 Silent p.V261V 0.38 TCGA-3C-AALI-01 20 24944536 24944536 G C APMAP Missense_Mutation p.I388M 0.19 deleterious(0.01) benign(0.312) TCGA-3C-AALI-01 20 264676 264676 C G C20orf96 Missense_Mutation p.K78N 0.05 deleterious(0.01) possibly_damaging(0.754) TCGA-3C-AALI-01 20 30467640 30467640 G C TTLL9 Intron 0.18 TCGA-3C-AALI-01 20 31172448 31172448 G C RP11-410N8.4 5'Flank 0.20 TCGA-3C-AALI-01 20 33169467 33169467 G T PIGU Silent p.P312P 0.15 TCGA-3C-AALI-01 20 33338299 33338299 G A NCOA6 Nonsense_Mutation p.Q567* 0.35 TCGA-3C-AALI-01 20 33568913 33568913 G C MYH7B Intron 0.17 TCGA-3C-AALI-01 20 3362057 3362057 C T C20orf194 Silent p.E84E 0.16 TCGA-3C-AALI-01 20 33762635 33762635 C G PROCR Missense_Mutation p.I67M 0.11 deleterious(0) probably_damaging(0.93) TCGA-3C-AALI-01 20 34542521 34542521 C T SCAND1 5'UTR 0.14 TCGA-3C-AALI-01 20 42354911 42354911 T A GTSF1L Nonsense_Mutation p.K142* 0.15 TCGA-3C-AALI-01 20 42354912 42354912 C T GTSF1L Silent p.Q141Q 0.15 TCGA-3C-AALI-01 20 44511426 44511426 C G ZSWIM1 Missense_Mutation p.S65R 0.43 deleterious(0) possibly_damaging(0.647) TCGA-3C-AALI-01 20 4764974 4764974 C T RASSF2 Missense_Mutation p.R309Q 0.19 tolerated(0.05) benign(0.117) TCGA-3C-AALI-01 20 49509648 49509648 G A ADNP Missense_Mutation p.H535Y 0.11 deleterious(0) probably_damaging(0.986) TCGA-3C-AALI-01 20 55213332 55213332 G T TFAP2C 3'UTR 0.11 TCGA-3C-AALI-01 20 60893582 60893582 G A LAMA5 Silent p.N2389N 0.14 TCGA-3C-AALI-01 20 60991888 60991888 C G RBBP8NL Missense_Mutation p.E81Q 0.20 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 20 61512888 61512888 C G DIDO1 Missense_Mutation p.E1474Q 0.16 possibly_damaging(0.77) TCGA-3C-AALI-01 20 61594096 61594096 G C SLC17A9 Silent p.L206L 0.10 TCGA-3C-AALI-01 20 62187055 62187055 G A C20orf195 Missense_Mutation p.M13I 0.10 tolerated(0.12) benign(0.001) TCGA-3C-AALI-01 20 62327135 62327135 C T RTEL1 Silent p.L1243L 0.06 TCGA-3C-AALI-01 20 62364663 62364663 C A ZGPAT Missense_Mutation p.A226D 0.39 deleterious(0) probably_damaging(0.917) TCGA-3C-AALI-01 20 62585043 62585044 - A AL118506.1 Frame_Shift_Ins p.K17Efs*42 0.21 TCGA-3C-AALI-01 21 19770211 19770211 C G TMPRSS15 Missense_Mutation p.R110T 0.35 tolerated(0.06) benign(0.049) TCGA-3C-AALI-01 21 26960086 26960086 G C MRPL39 Missense_Mutation p.L329V 0.26 tolerated_low_confidence(1) benign(0) TCGA-3C-AALI-01 21 31311773 31311773 C A GRIK1 Missense_Mutation p.D16Y 0.35 tolerated_low_confidence(1) benign(0.002) TCGA-3C-AALI-01 21 32410504 32410504 G C KRTAP19-8 3'UTR 0.42 TCGA-3C-AALI-01 21 33948966 33948966 C G TCP10L 3'UTR 0.31 TCGA-3C-AALI-01 21 33956583 33956583 G T TCP10L Missense_Mutation p.P11H 0.23 tolerated_low_confidence(0.06) benign(0.022) TCGA-3C-AALI-01 21 34918661 34918661 G C SON Missense_Mutation p.D74H 0.29 possibly_damaging(0.861) TCGA-3C-AALI-01 21 36160700 36160700 C A RUNX1 3'UTR 0.26 TCGA-3C-AALI-01 21 37445162 37445162 G C CBR1 Missense_Mutation p.K272N 0.19 deleterious(0) possibly_damaging(0.893) TCGA-3C-AALI-01 21 37717293 37717293 C G MORC3 Silent p.L323L 0.30 TCGA-3C-AALI-01 21 43412219 43412219 C T ZBTB21 Silent p.L662L 0.29 TCGA-3C-AALI-01 21 43533848 43533848 C T UMODL1 Missense_Mutation p.S885L 0.30 deleterious(0.05) possibly_damaging(0.519) TCGA-3C-AALI-01 21 48071874 48071874 C T PRMT2 Intron 0.30 TCGA-3C-AALI-01 21 9908222 9908222 C T TEKT4P2 RNA 0.10 TCGA-3C-AALI-01 22 18975324 18975324 G A DGCR5 RNA 0.44 TCGA-3C-AALI-01 22 21311739 21311739 G C CRKL 3'Flank 0.23 TCGA-3C-AALI-01 22 29130505 29130505 G A CHEK2 Nonsense_Mutation p.Q69* 0.15 TCGA-3C-AALI-01 22 30230532 30230532 G A ASCC2 5'UTR 0.17 TCGA-3C-AALI-01 22 32586636 32586636 C G RFPL2 3'UTR 0.52 TCGA-3C-AALI-01 22 41605693 41605693 C T L3MBTL2 Intron 0.25 TCGA-3C-AALI-01 22 42980357 42980357 C G POLDIP3 3'UTR 0.29 TCGA-3C-AALI-01 22 46859616 46859616 C T CELSR1 Missense_Mutation p.E1391K 0.30 tolerated(0.08) benign(0.368) TCGA-3C-AALI-01 22 50278762 50278762 C G ZBED4 Missense_Mutation p.I484M 0.26 deleterious(0) probably_damaging(0.977) TCGA-3C-AALI-01 2 109150591 109150591 C T AC012487.2 RNA 0.21 TCGA-3C-AALI-01 2 109545717 109545717 C G EDAR Missense_Mutation p.R98P 0.16 deleterious(0) probably_damaging(0.997) TCGA-3C-AALI-01 2 110259218 110259218 C G SH3RF3 Silent p.L873L 0.27 TCGA-3C-AALI-01 2 112751854 112751854 G A MERTK Silent p.Q441Q 0.06 TCGA-3C-AALI-01 2 128476874 128476874 G A WDR33 Silent p.L909L 0.20 TCGA-3C-AALI-01 2 128621725 128621725 G C AMMECR1L 3'UTR 0.21 TCGA-3C-AALI-01 2 131523424 131523424 G A AMER3 3'UTR 0.27 TCGA-3C-AALI-01 2 136570322 136570322 C G LCT Missense_Mutation p.D638H 0.28 tolerated(0.09) possibly_damaging(0.9) TCGA-3C-AALI-01 2 14774939 14774939 G A FAM84A Missense_Mutation p.R279Q 0.36 tolerated(0.31) possibly_damaging(0.885) TCGA-3C-AALI-01 2 158272271 158272271 C G CYTIP Missense_Mutation p.R333T 0.25 deleterious(0) possibly_damaging(0.735) TCGA-3C-AALI-01 2 163070549 163070549 C T FAP Missense_Mutation p.D301N 0.26 tolerated(0.15) benign(0.079) TCGA-3C-AALI-01 2 165404194 165404194 C G GRB14 Missense_Mutation p.E153Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 2 166805946 166805946 G A TTC21B Silent p.L74L 0.45 TCGA-3C-AALI-01 2 169717408 169717408 C A NOSTRIN Missense_Mutation p.S485Y 0.28 tolerated(0.13) benign(0.014) TCGA-3C-AALI-01 2 170104026 170104026 C G LRP2 Splice_Site p.X924_splice 0.17 TCGA-3C-AALI-01 2 175711694 175711694 A T CHN1 Intron 0.19 TCGA-3C-AALI-01 2 175957317 175957317 C G ATF2 Intron 0.15 TCGA-3C-AALI-01 2 17699324 17699324 G T RAD51AP2 Nonsense_Mutation p.S120* 0.15 TCGA-3C-AALI-01 2 179536884 179536884 C T TTN Missense_Mutation p.E11681K 0.22 TCGA-3C-AALI-01 2 179611205 179611205 G T TTN Intron 0.15 TCGA-3C-AALI-01 2 182402742 182402742 G A CERKL 3'Flank 0.20 TCGA-3C-AALI-01 2 182402750 182402750 G A CERKL 3'Flank 0.18 TCGA-3C-AALI-01 2 183943846 183943846 C T DUSP19 Missense_Mutation p.S62L 0.27 tolerated(0.43) benign(0) TCGA-3C-AALI-01 2 187605140 187605140 G T FAM171B Missense_Mutation p.D142Y 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-3C-AALI-01 2 191379220 191379220 C G TMEM194B Missense_Mutation p.W304C 0.29 deleterious(0.01) possibly_damaging(0.643) TCGA-3C-AALI-01 2 197703823 197703823 G A PGAP1 3'UTR 0.33 TCGA-3C-AALI-01 2 201470313 201470313 G C AOX1 Missense_Mutation p.R290T 0.10 tolerated(0.32) benign(0.371) TCGA-3C-AALI-01 2 201784976 201784976 G A ORC2 Missense_Mutation p.H479Y 0.25 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 2 209221373 209221373 C G PIKFYVE 3'UTR 0.52 TCGA-3C-AALI-01 2 210659568 210659568 G A UNC80 Intron 0.06 TCGA-3C-AALI-01 2 21231348 21231348 C G APOB Missense_Mutation p.E2798Q 0.43 benign(0.07) TCGA-3C-AALI-01 2 21255279 21255279 C T APOB Silent p.A433A 0.38 TCGA-3C-AALI-01 2 217363991 217363991 A T RPL37A Splice_Site p.X2_splice 0.30 TCGA-3C-AALI-01 2 219503070 219503070 C G ZNF142 Missense_Mutation p.E1686Q 0.12 deleterious_low_confidence(0.04) benign(0.403) TCGA-3C-AALI-01 2 226378388 226378388 G C NYAP2 Missense_Mutation p.A175P 0.17 tolerated(0.09) benign(0.412) TCGA-3C-AALI-01 2 228137771 228137771 G T COL4A3 Missense_Mutation p.G622V 0.30 unknown(0) TCGA-3C-AALI-01 2 230900639 230900639 C A SLC16A14 3'UTR 0.16 TCGA-3C-AALI-01 2 27587598 27587598 G A EIF2B4 Silent p.V473V 0.44 TCGA-3C-AALI-01 2 27720140 27720140 C A GCKR Silent p.I30I 0.17 TCGA-3C-AALI-01 2 27801939 27801939 C A C2orf16 Missense_Mutation p.L834I 0.18 tolerated(0.21) benign(0.038) TCGA-3C-AALI-01 2 33622325 33622325 G C LTBP1 Missense_Mutation p.D1654H 0.40 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 2 38156459 38156459 C T RMDN2 Silent p.I13I 0.19 TCGA-3C-AALI-01 2 45879495 45879495 G A PRKCE Missense_Mutation p.D86N 0.23 tolerated(0.07) possibly_damaging(0.597) TCGA-3C-AALI-01 2 50149337 50149337 C T NRXN1 Silent p.V1463V 0.18 TCGA-3C-AALI-01 2 50149365 50149365 C G NRXN1 Missense_Mutation p.R1454T 0.15 tolerated_low_confidence(0.05) benign(0.009) TCGA-3C-AALI-01 2 54152783 54152783 C T PSME4 Missense_Mutation p.E568K 0.37 tolerated(0.53) benign(0.091) TCGA-3C-AALI-01 2 54176386 54176386 C G PSME4 Missense_Mutation p.E93Q 0.14 tolerated(0.08) possibly_damaging(0.624) TCGA-3C-AALI-01 2 55459801 55459801 C T RPS27A 5'UTR 0.33 TCGA-3C-AALI-01 2 5835860 5835860 G A SOX11 3'UTR 0.17 TCGA-3C-AALI-01 2 70441595 70441595 C A TIA1 Missense_Mutation p.G307V 0.19 deleterious(0.01) benign(0.341) TCGA-3C-AALI-01 2 73437937 73437937 G C NOTO Missense_Mutation p.Q212H 0.23 deleterious(0) probably_damaging(0.992) TCGA-3C-AALI-01 2 74328172 74328172 G C TET3 Missense_Mutation p.K1284N 0.38 tolerated(0.39) benign(0.029) TCGA-3C-AALI-01 2 74699769 74699769 G A MRPL53 Missense_Mutation p.R7W 0.21 deleterious(0.01) possibly_damaging(0.487) TCGA-3C-AALI-01 2 75061666 75061666 C T HK2 5'UTR 0.16 TCGA-3C-AALI-01 2 90044340 90044340 C T IGKV2D-24 Silent p.F87F 0.15 TCGA-3C-AALI-01 2 90139118 90139118 T A IGKV1D-16 Missense_Mutation p.V5D 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.784) TCGA-3C-AALI-01 2 96261973 96261973 G C TRIM43 Missense_Mutation p.Q177H 0.34 deleterious(0.01) benign(0.211) TCGA-3C-AALI-01 2 96858865 96858865 G A STARD7 Missense_Mutation p.R232W 0.39 deleterious(0.03) possibly_damaging(0.808) TCGA-3C-AALI-01 2 97361232 97361232 C G FER1L5 RNA 0.16 TCGA-3C-AALI-01 2 9770370 9770370 G A YWHAQ Missense_Mutation p.T71I 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.625) TCGA-3C-AALI-01 2 97845640 97845640 G A ANKRD36 Missense_Mutation p.E569K 0.20 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-3C-AALI-01 2 99189292 99189292 C T INPP4A Missense_Mutation p.R850C 0.20 deleterious(0.04) probably_damaging(0.979) TCGA-3C-AALI-01 3 100537408 100537408 C T ABI3BP Intron 0.20 TCGA-3C-AALI-01 3 101389944 101389944 C T ZBTB11 Intron 0.30 TCGA-3C-AALI-01 3 109056387 109056387 C A DPPA4 5'UTR 0.25 TCGA-3C-AALI-01 3 110911218 110911218 G C PVRL3 Missense_Mutation p.Q414H 0.15 deleterious_low_confidence(0.01) benign(0.365) TCGA-3C-AALI-01 3 111313619 111313619 G A ZBED2 5'UTR 0.45 TCGA-3C-AALI-01 3 111831808 111831808 C T C3orf52 Intron 0.16 TCGA-3C-AALI-01 3 11851021 11851021 C T TAMM41 Missense_Mutation p.D282N 0.13 tolerated(0.06) benign(0.159) TCGA-3C-AALI-01 3 119121225 119121225 G A ARHGAP31 Silent p.L542L 0.38 TCGA-3C-AALI-01 3 120123697 120123697 C T FSTL1 Intron 0.13 TCGA-3C-AALI-01 3 121217409 121217409 C T POLQ Missense_Mutation p.E690K 0.38 deleterious(0.03) probably_damaging(0.968) TCGA-3C-AALI-01 3 121634160 121634160 G A SLC15A2 Silent p.L205L 0.16 TCGA-3C-AALI-01 3 121720271 121720271 C T ILDR1 Missense_Mutation p.G177E 0.38 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 3 122459392 122459392 C G HSPBAP1 Missense_Mutation p.E423Q 0.43 tolerated(0.46) benign(0.197) TCGA-3C-AALI-01 3 126158539 126158539 G A ZXDC Missense_Mutation p.S809L 0.37 tolerated(1) benign(0) TCGA-3C-AALI-01 3 126255178 126255178 G A CHST13 Silent p.K54K 0.24 TCGA-3C-AALI-01 3 128205025 128205025 G C GATA2 Missense_Mutation p.S139C 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-3C-AALI-01 3 128292386 128292386 G C C3orf27 Missense_Mutation p.L63V 0.12 possibly_damaging(0.567) TCGA-3C-AALI-01 3 135745786 135745786 C T PPP2R3A Missense_Mutation p.A703V 0.25 tolerated(0.19) benign(0.001) TCGA-3C-AALI-01 3 136664831 136664831 C T NCK1 Silent p.F211F 0.18 TCGA-3C-AALI-01 3 138020329 138020329 G C NME9 Intron 0.26 TCGA-3C-AALI-01 3 138178807 138178807 C A ESYT3 Silent p.V223V 0.16 TCGA-3C-AALI-01 3 138256109 138256109 T A CEP70 Missense_Mutation p.L182F 0.19 tolerated(0.18) benign(0.05) TCGA-3C-AALI-01 3 14206327 14206327 C T XPC Missense_Mutation p.E296K 0.25 deleterious(0.02) benign(0.077) TCGA-3C-AALI-01 3 14526474 14526474 C T SLC6A6 Missense_Mutation p.L608F 0.19 tolerated_low_confidence(0.13) benign(0.011) TCGA-3C-AALI-01 3 15300254 15300254 G A SH3BP5 Intron 0.22 TCGA-3C-AALI-01 3 15452834 15452834 G A METTL6 Missense_Mutation p.L262F 0.13 deleterious(0.01) possibly_damaging(0.729) TCGA-3C-AALI-01 3 154862199 154862199 G T MME Missense_Mutation p.D457Y 0.15 deleterious(0) possibly_damaging(0.728) TCGA-3C-AALI-01 3 158384277 158384277 G C LXN 3'UTR 0.31 TCGA-3C-AALI-01 3 167023514 167023514 G C ZBBX Missense_Mutation p.Q548E 0.47 tolerated(0.21) benign(0.05) TCGA-3C-AALI-01 3 169700645 169700645 G C SEC62 Missense_Mutation p.K134N 0.15 tolerated(0.08) possibly_damaging(0.728) TCGA-3C-AALI-01 3 17053038 17053038 A T PLCL2 Missense_Mutation p.R608W 0.16 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 3 183822579 183822579 G T HTR3E Missense_Mutation p.D158Y 0.24 deleterious(0) possibly_damaging(0.823) TCGA-3C-AALI-01 3 185003386 185003386 G C MAP3K13 5'UTR 0.15 TCGA-3C-AALI-01 3 185046973 185046973 C G MAP3K13 5'UTR 0.19 TCGA-3C-AALI-01 3 185331166 185331166 G A SENP2 Silent p.T301T 0.20 TCGA-3C-AALI-01 3 186038427 186038427 G C DGKG 5'UTR 0.35 TCGA-3C-AALI-01 3 190374349 190374349 C T IL1RAP Missense_Mutation p.H673Y 0.32 tolerated_low_confidence(0.09) benign(0.315) TCGA-3C-AALI-01 3 195511007 195511007 G C MUC4 Missense_Mutation p.L2482V 0.09 unknown(0) TCGA-3C-AALI-01 3 197770449 197770449 C T LMLN 3'Flank 0.36 TCGA-3C-AALI-01 3 3139921 3139921 C T IL5RA Missense_Mutation p.D141N 0.43 tolerated(1) benign(0.004) TCGA-3C-AALI-01 3 33538899 33538899 G C CLASP2 3'UTR 0.14 TCGA-3C-AALI-01 3 38592648 38592648 G A SCN5A Missense_Mutation p.R1739W 0.16 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 3 39226453 39226453 C T XIRP1 Missense_Mutation p.R1495Q 0.14 tolerated(0.43) benign(0.005) TCGA-3C-AALI-01 3 4345496 4345496 C T SETMAR Intron 0.34 TCGA-3C-AALI-01 3 44285670 44285670 G C TOPAZ1 Missense_Mutation p.E558Q 0.09 tolerated(0.06) benign(0.413) TCGA-3C-AALI-01 3 47628696 47628696 G T SMARCC1 3'UTR 0.65 TCGA-3C-AALI-01 3 47628842 47628842 G C SMARCC1 3'UTR 0.69 TCGA-3C-AALI-01 3 48508355 48508355 G A TREX1 Missense_Mutation p.D156N 0.72 tolerated(0.29) benign(0.013) TCGA-3C-AALI-01 3 52402904 52402904 C A DNAH1 Silent p.L1971L 0.31 TCGA-3C-AALI-01 3 54958878 54958878 C T LRTM1 Silent p.L124L 0.24 TCGA-3C-AALI-01 3 57419512 57419512 G A DNAH12 Silent p.L1544L 0.28 TCGA-3C-AALI-01 3 9543863 9543863 C G LHFPL4 3'UTR 0.44 TCGA-3C-AALI-01 3 9731654 9731654 G A MTMR14 Silent p.K480K 0.18 TCGA-3C-AALI-01 3 9883517 9883517 C T RPUSD3 Intron 0.32 TCGA-3C-AALI-01 4 100131313 100131313 C T ADH6 Missense_Mutation p.A165T 0.29 deleterious(0) possibly_damaging(0.668) TCGA-3C-AALI-01 4 103748149 103748149 G - UBE2D3 Intron 0.33 TCGA-3C-AALI-01 4 103748165 103748165 T G UBE2D3 Intron 0.32 TCGA-3C-AALI-01 4 106157359 106157359 G T TET2 Nonsense_Mutation p.E754* 0.15 TCGA-3C-AALI-01 4 109670394 109670394 C T ETNPPL Silent p.T309T 0.20 TCGA-3C-AALI-01 4 115597718 115597718 G C UGT8 3'UTR 0.20 TCGA-3C-AALI-01 4 119253005 119253005 G C PRSS12 Missense_Mutation p.I279M 0.22 tolerated(0.12) benign(0.006) TCGA-3C-AALI-01 4 123302252 123302252 G C ADAD1 Missense_Mutation p.G93A 0.22 deleterious(0) probably_damaging(0.995) TCGA-3C-AALI-01 4 151223831 151223831 G C LRBA Missense_Mutation p.L2666V 0.27 tolerated(0.68) probably_damaging(0.997) TCGA-3C-AALI-01 4 153271249 153271249 C G FBXW7 Missense_Mutation p.E177Q 0.17 deleterious_low_confidence(0.01) benign(0.374) TCGA-3C-AALI-01 4 15690718 15690718 C T FAM200B 3'UTR 0.14 TCGA-3C-AALI-01 4 164394052 164394052 C A TKTL2 Nonsense_Mutation p.E279* 0.22 TCGA-3C-AALI-01 4 170016437 170016437 G C SH3RF1 3'UTR 0.19 TCGA-3C-AALI-01 4 183723368 183723368 G A TENM3 3'UTR 0.18 TCGA-3C-AALI-01 4 185941666 185941666 G C HELT Missense_Mutation p.A242P 0.31 tolerated(0.46) benign(0.006) TCGA-3C-AALI-01 4 1985339 1985339 G A NELFA Silent p.F473F 0.20 TCGA-3C-AALI-01 4 20490554 20490554 C T SLIT2 Silent p.L242L 0.22 TCGA-3C-AALI-01 4 3769554 3769554 C G ADRA2C Missense_Mutation p.I407M 0.27 deleterious(0) possibly_damaging(0.902) TCGA-3C-AALI-01 4 3769629 3769629 C G ADRA2C Silent p.L432L 0.29 TCGA-3C-AALI-01 4 41746505 41746505 G C PHOX2B 3'UTR 0.36 TCGA-3C-AALI-01 4 47559901 47559901 G A ATP10D Missense_Mutation p.S682N 0.20 tolerated(0.27) benign(0.005) TCGA-3C-AALI-01 4 6642874 6642874 G C MRFAP1 Missense_Mutation p.K95N 0.31 deleterious(0.04) benign(0.075) TCGA-3C-AALI-01 4 68358605 68358605 G A CENPC Missense_Mutation p.L801F 0.23 tolerated(0.14) possibly_damaging(0.675) TCGA-3C-AALI-01 4 71507970 71507970 G T ENAM Missense_Mutation p.G276V 0.17 tolerated(0.08) benign(0.169) TCGA-3C-AALI-01 4 76787427 76787427 G A PPEF2 Missense_Mutation p.P612L 0.34 deleterious(0.03) probably_damaging(0.935) TCGA-3C-AALI-01 4 77661805 77661805 G C SHROOM3 Missense_Mutation p.E827Q 0.27 deleterious(0.05) benign(0.342) TCGA-3C-AALI-01 4 89183748 89183748 C T PPM1K Silent p.%3D 0.33 TCGA-3C-AALI-01 4 89708998 89708998 C G FAM13A Missense_Mutation p.E393Q 0.33 tolerated(0.4) benign(0.285) TCGA-3C-AALI-01 5 114603566 114603566 G C CCDC112 3'UTR 0.39 TCGA-3C-AALI-01 5 122137613 122137613 C T SNX2 Missense_Mutation p.S147L 0.64 deleterious(0.02) possibly_damaging(0.83) TCGA-3C-AALI-01 5 122181359 122181359 G A SNX24 Missense_Mutation p.E11K 0.62 deleterious(0.05) benign(0.001) TCGA-3C-AALI-01 5 140431242 140431242 G C PCDHB1 Missense_Mutation p.G63R 0.31 tolerated(0.38) probably_damaging(0.992) TCGA-3C-AALI-01 5 140604377 140604377 G C PCDHB14 Missense_Mutation p.E434Q 0.30 tolerated_low_confidence(1) benign(0.058) TCGA-3C-AALI-01 5 145826908 145826908 C T TCERG1 5'UTR 0.37 TCGA-3C-AALI-01 5 147889201 147889201 G C HTR4 Silent p.L298L 0.36 TCGA-3C-AALI-01 5 160886629 160886629 C A GABRB2 Splice_Site p.X153_splice 0.24 TCGA-3C-AALI-01 5 162943877 162943877 C A MAT2B Intron 0.36 TCGA-3C-AALI-01 5 16671536 16671536 C G MYO10 Missense_Mutation p.E1809Q 0.06 tolerated(0.1) probably_damaging(0.996) TCGA-3C-AALI-01 5 176868912 176868912 G A GRK6 3'UTR 0.21 TCGA-3C-AALI-01 5 176942946 176942946 C G DDX41 Missense_Mutation p.D140H 0.23 deleterious(0.03) benign(0.443) TCGA-3C-AALI-01 5 176943186 176943186 C G DDX41 Missense_Mutation p.E103Q 0.15 tolerated(0.38) possibly_damaging(0.709) TCGA-3C-AALI-01 5 178552017 178552017 C A ADAMTS2 Missense_Mutation p.R972L 0.22 tolerated(0.09) probably_damaging(1) TCGA-3C-AALI-01 5 179201275 179201275 G C MAML1 Silent p.L816L 0.42 TCGA-3C-AALI-01 5 22078823 22078823 C T CDH12 5'UTR 0.46 TCGA-3C-AALI-01 5 32091151 32091151 G A PDZD2 Missense_Mutation p.E2533K 0.34 tolerated(0.87) benign(0.002) TCGA-3C-AALI-01 5 35793389 35793389 C G SPEF2 Missense_Mutation p.F1561L 0.12 deleterious(0) probably_damaging(0.978) TCGA-3C-AALI-01 5 38945050 38945050 G C RICTOR Nonsense_Mutation p.S1585* 0.05 TCGA-3C-AALI-01 5 40767666 40767666 G C PRKAA1 Missense_Mutation p.I256M 0.18 tolerated(0.15) possibly_damaging(0.859) TCGA-3C-AALI-01 5 53606389 53606389 G A ARL15 5'UTR 0.32 TCGA-3C-AALI-01 5 60821671 60821671 G C ZSWIM6 Missense_Mutation p.E520Q 0.27 tolerated(0.22) benign(0.365) TCGA-3C-AALI-01 5 648011 648011 G C CEP72 Missense_Mutation p.Q586H 0.28 tolerated(0.14) benign(0.03) TCGA-3C-AALI-01 5 65058789 65058789 G A NLN Missense_Mutation p.E102K 0.41 tolerated(0.27) benign(0.017) TCGA-3C-AALI-01 5 65374790 65374790 G A ERBB2IP 3'Flank 0.36 TCGA-3C-AALI-01 5 68670485 68670485 G A RAD17 Missense_Mutation p.E111K 0.43 deleterious(0) probably_damaging(0.977) TCGA-3C-AALI-01 5 72385119 72385119 G C FCHO2 3'UTR 0.26 TCGA-3C-AALI-01 5 72798326 72798326 G C BTF3 Missense_Mutation p.R72T 0.36 deleterious(0) possibly_damaging(0.887) TCGA-3C-AALI-01 5 74892282 74892282 G A POLK Silent p.V588V 0.26 TCGA-3C-AALI-01 5 78076163 78076163 G C ARSB 3'UTR 0.28 TCGA-3C-AALI-01 5 79027491 79027491 G C CMYA5 Missense_Mutation p.R968T 0.43 probably_damaging(0.95) TCGA-3C-AALI-01 5 92929327 92929327 G A NR2F1 Missense_Mutation p.A351T 0.71 tolerated(0.1) probably_damaging(0.941) TCGA-3C-AALI-01 6 108489264 108489264 G C NR2E1 Intron 0.29 TCGA-3C-AALI-01 6 109005360 109005360 C T FOXO3 3'UTR 0.12 TCGA-3C-AALI-01 6 112420550 112420550 G A FAM229B Missense_Mutation p.E22K 0.34 tolerated_low_confidence(0.12) benign(0.031) TCGA-3C-AALI-01 6 129901226 129901226 C G ARHGAP18 Missense_Mutation p.G630A 0.30 deleterious(0.01) probably_damaging(0.936) TCGA-3C-AALI-01 6 136667169 136667169 C G MAP7 Missense_Mutation p.Q710H 0.51 deleterious(0) unknown(0) TCGA-3C-AALI-01 6 137527362 137527362 G C IFNGR1 Nonsense_Mutation p.S95* 0.67 TCGA-3C-AALI-01 6 143754969 143754969 C G ADAT2 Missense_Mutation p.M117I 0.24 tolerated(0.34) benign(0.115) TCGA-3C-AALI-01 6 144164513 144164513 G A LTV1 5'UTR 0.29 TCGA-3C-AALI-01 6 145072949 145072949 G C UTRN Missense_Mutation p.R2739T 0.28 deleterious(0) possibly_damaging(0.633) TCGA-3C-AALI-01 6 151671339 151671339 G A AKAP12 Missense_Mutation p.E605K 0.17 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 6 160467555 160467555 C A IGF2R Silent p.L643L 0.30 TCGA-3C-AALI-01 6 161538416 161538416 C T MAP3K4 3'UTR 0.29 TCGA-3C-AALI-01 6 16327439 16327439 G A ATXN1 Missense_Mutation p.S368L 0.17 deleterious(0.01) benign(0.005) TCGA-3C-AALI-01 6 170870925 170870925 A G TBP Missense_Mutation p.Y34C 0.39 deleterious_low_confidence(0.03) unknown(0) TCGA-3C-AALI-01 6 24588936 24588936 G A KIAA0319 Silent p.L293L 0.46 TCGA-3C-AALI-01 6 26031973 26031973 C G HIST1H3B Missense_Mutation p.E106Q 0.24 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-3C-AALI-01 6 26104244 26104244 C G HIST1H4C Silent p.L23L 0.19 TCGA-3C-AALI-01 6 26123919 26123919 C G HIST1H2BC Missense_Mutation p.E72Q 0.20 deleterious_low_confidence(0.02) benign(0.213) TCGA-3C-AALI-01 6 26252083 26252083 G A HIST1H2BH Missense_Mutation p.D69N 0.21 deleterious_low_confidence(0.05) benign(0.209) TCGA-3C-AALI-01 6 30571810 30571810 G AA PPP1R10 Frame_Shift_Ins p.Q495Lfs*12 0.29 TCGA-3C-AALI-01 6 32032745 32032745 C G TNXB Missense_Mutation p.D2232H 0.19 probably_damaging(0.991) TCGA-3C-AALI-01 6 33359713 33359713 C G KIFC1 5'UTR 0.24 TCGA-3C-AALI-01 6 33690912 33690912 C T IP6K3 Missense_Mutation p.R273K 0.16 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 6 36993587 36993587 C T FGD2 Missense_Mutation p.S493F 0.26 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 6 37336563 37336563 G A RNF8 Missense_Mutation p.E182K 0.22 tolerated(0.16) benign(0.01) TCGA-3C-AALI-01 6 39835452 39835452 G A DAAM2 Missense_Mutation p.E199K 0.20 tolerated(0.09) possibly_damaging(0.833) TCGA-3C-AALI-01 6 43266301 43266301 C G SLC22A7 Missense_Mutation p.L69V 0.25 tolerated(0.28) benign(0.005) TCGA-3C-AALI-01 6 45880341 45880341 G A CLIC5 Intron 0.21 TCGA-3C-AALI-01 6 47594274 47594274 C A CD2AP 3'UTR 0.19 TCGA-3C-AALI-01 6 4954197 4954197 G T CDYL Missense_Mutation p.E514D 0.21 deleterious(0.03) benign(0.015) TCGA-3C-AALI-01 6 52285245 52285245 C T EFHC1 Missense_Mutation p.P13S 0.15 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 6 52866642 52866642 G A ICK 3'UTR 0.18 TCGA-3C-AALI-01 6 52876711 52876711 C G ICK Missense_Mutation p.E450Q 0.23 tolerated(0.15) benign(0.285) TCGA-3C-AALI-01 6 56426933 56426933 C A DST Intron 0.15 TCGA-3C-AALI-01 6 74331642 74331642 G C SLC17A5 Missense_Mutation p.S288C 0.20 deleterious(0.01) possibly_damaging(0.896) TCGA-3C-AALI-01 6 90718326 90718326 C G BACH2 Missense_Mutation p.E80Q 0.39 deleterious(0.05) benign(0.11) TCGA-3C-AALI-01 6 93952183 93952183 G T EPHA7 3'UTR 0.34 TCGA-3C-AALI-01 6 97063636 97063636 C A FHL5 Missense_Mutation p.D281E 0.39 tolerated_low_confidence(0.66) benign(0.002) TCGA-3C-AALI-01 7 100239106 100239106 C G TFR2 Missense_Mutation p.Q9H 0.17 tolerated_low_confidence(0.09) benign(0.003) TCGA-3C-AALI-01 7 100678911 100678911 C G MUC17 Missense_Mutation p.T1405S 0.18 unknown(0) TCGA-3C-AALI-01 7 104747950 104747950 G C KMT2E Missense_Mutation p.E1016Q 0.25 tolerated_low_confidence(0.09) benign(0.403) TCGA-3C-AALI-01 7 11418795 11418795 C G THSD7A Missense_Mutation p.R1568T 0.34 deleterious(0) benign(0.028) TCGA-3C-AALI-01 7 11450926 11450926 C T THSD7A Missense_Mutation p.E1236K 0.19 deleterious(0.03) benign(0.016) TCGA-3C-AALI-01 7 117282538 117282538 C G CFTR Nonsense_Mutation p.S1255* 0.12 TCGA-3C-AALI-01 7 1192583 1192583 C G ZFAND2A 3'UTR 0.37 TCGA-3C-AALI-01 7 121651993 121651993 G A PTPRZ1 Missense_Mutation p.G965S 0.13 tolerated_low_confidence(1) benign(0.002) TCGA-3C-AALI-01 7 124782944 124782944 T A POT1-AS1 RNA 0.18 TCGA-3C-AALI-01 7 128444727 128444727 C T CCDC136 Missense_Mutation p.R232C 0.40 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 7 128496663 128496663 C T FLNC Missense_Mutation p.S2448L 0.06 deleterious(0.03) benign(0.106) TCGA-3C-AALI-01 7 142124210 142124210 C T TRBV6-8 Missense_Mutation p.E90K 0.42 tolerated(0.12) benign(0.012) TCGA-3C-AALI-01 7 1488302 1488302 C G MICALL2 Missense_Mutation p.L96F 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-3C-AALI-01 7 149428776 149428776 C G KRBA1 Missense_Mutation p.P720A 0.12 deleterious(0.04) benign(0.306) TCGA-3C-AALI-01 7 149481021 149481021 G C SSPO RNA 0.14 TCGA-3C-AALI-01 7 150749754 150749754 T A ASIC3 Missense_Mutation p.V544D 0.14 tolerated_low_confidence(0.09) benign(0.148) TCGA-3C-AALI-01 7 151664500 151664500 A T GALNTL5 Missense_Mutation p.I57F 0.37 tolerated(0.36) benign(0.122) TCGA-3C-AALI-01 7 151900110 151900110 G C KMT2C Missense_Mutation p.S1334C 0.18 benign(0.06) TCGA-3C-AALI-01 7 21655918 21655918 C T DNAH11 Missense_Mutation p.S1368F 0.06 benign(0.001) TCGA-3C-AALI-01 7 29944193 29944193 C T WIPF3 Intron 0.19 TCGA-3C-AALI-01 7 30087570 30087570 G A PLEKHA8 Missense_Mutation p.E146K 0.14 tolerated(0.11) benign(0.033) TCGA-3C-AALI-01 7 34800762 34800762 G T NPSR1 Intron 0.13 TCGA-3C-AALI-01 7 38279682 38279682 G A TRGC2 Silent p.I171I 0.11 TCGA-3C-AALI-01 7 44099153 44099153 G A DBNL Missense_Mutation p.E324K 0.10 tolerated(0.57) benign(0.008) TCGA-3C-AALI-01 7 590112 590112 C G PRKAR1B Missense_Mutation p.K367N 0.32 deleterious(0) probably_damaging(0.993) TCGA-3C-AALI-01 7 6017377 6017377 C T PMS2 Missense_Mutation p.E763K 0.38 tolerated(0.34) benign(0.026) TCGA-3C-AALI-01 7 64169001 64169001 G A ZNF107 Silent p.E773E 0.12 TCGA-3C-AALI-01 7 65224165 65224165 G A SNORA22 3'Flank 0.31 TCGA-3C-AALI-01 7 72419340 72419340 G A POM121 3'UTR 0.08 TCGA-3C-AALI-01 7 73098175 73098175 G T WBSCR22 Intron 0.19 TCGA-3C-AALI-01 7 77408867 77408867 C G RSBN1L 3'UTR 0.16 TCGA-3C-AALI-01 7 86394831 86394831 G T GRM3 Nonsense_Mutation p.E124* 0.12 TCGA-3C-AALI-01 7 86493931 86493931 G C GRM3 3'UTR 0.17 TCGA-3C-AALI-01 7 89887447 89887447 G C C7orf63 Missense_Mutation p.K72N 0.20 tolerated(0.09) benign(0.302) TCGA-3C-AALI-01 7 94174868 94174868 T A CASD1 Silent p.R496R 0.38 TCGA-3C-AALI-01 7 95213168 95213168 G A PDK4 3'UTR 0.35 TCGA-3C-AALI-01 7 98478734 98478734 G C TRRAP 5'UTR 0.19 TCGA-3C-AALI-01 7 98608847 98608847 G A TRRAP Missense_Mutation p.R3690K 0.46 probably_damaging(0.973) TCGA-3C-AALI-01 7 99170778 99170778 G A ZNF655 Silent p.Q384Q 0.21 TCGA-3C-AALI-01 7 99704896 99704896 G T TAF6 Missense_Mutation p.N706K 0.16 tolerated_low_confidence(0.3) benign(0.002) TCGA-3C-AALI-01 7 99798813 99798813 C T GATS 3'UTR 0.17 TCGA-3C-AALI-01 8 113293468 113293468 G C CSMD3 Missense_Mutation p.S3148C 0.21 deleterious(0) probably_damaging(0.928) TCGA-3C-AALI-01 8 117954898 117954898 A G AARD Silent p.S142S 0.19 TCGA-3C-AALI-01 8 12043972 12043972 C T FAM86B1 Missense_Mutation p.D177N 0.14 tolerated(0.11) benign(0.071) TCGA-3C-AALI-01 8 120606076 120606076 C T ENPP2 Missense_Mutation p.D385N 0.34 deleterious(0) probably_damaging(1) TCGA-3C-AALI-01 8 125989923 125989923 C A ZNF572 Silent p.T471T 0.18 TCGA-3C-AALI-01 8 132002680 132002680 C G ADCY8 Missense_Mutation p.V357L 0.22 deleterious(0.01) benign(0.037) TCGA-3C-AALI-01 8 136569752 136569752 C G KHDRBS3 Nonsense_Mutation p.S178* 0.14 TCGA-3C-AALI-01 8 143853672 143853672 C T LYNX1 Intron 0.21 TCGA-3C-AALI-01 8 144682042 144682042 G C TIGD5 3'UTR 0.14 TCGA-3C-AALI-01 8 145024653 145024653 G A PLEC Silent p.L74L 0.24 TCGA-3C-AALI-01 8 145154608 145154608 G C SHARPIN Missense_Mutation p.I219M 0.17 deleterious(0) possibly_damaging(0.786) TCGA-3C-AALI-01 8 145947703 145947703 G C ZNF251 Missense_Mutation p.L448V 0.13 tolerated(0.07) possibly_damaging(0.626) TCGA-3C-AALI-01 8 146067853 146067853 C G ZNF7 Nonsense_Mutation p.S454* 0.10 TCGA-3C-AALI-01 8 1616843 1616843 A G DLGAP2 Missense_Mutation p.Q640R 0.06 deleterious(0.02) possibly_damaging(0.791) TCGA-3C-AALI-01 8 17942305 17942305 G A ASAH1 Silent p.N2N 0.12 TCGA-3C-AALI-01 8 26365218 26365218 G A PNMA2 Nonsense_Mutation p.R352* 0.21 TCGA-3C-AALI-01 8 26515521 26515521 C G DPYSL2 3'UTR 0.17 TCGA-3C-AALI-01 8 27456118 27456118 G A CLU Missense_Mutation p.S400F 0.15 deleterious(0) benign(0.315) TCGA-3C-AALI-01 8 41397291 41397291 G A GINS4 Missense_Mutation p.R131K 0.18 tolerated(1) benign(0) TCGA-3C-AALI-01 8 41788667 41788667 G A KAT6A 3'UTR 0.24 TCGA-3C-AALI-01 8 42841858 42841858 G A HOOK3 Silent p.S484S 0.18 TCGA-3C-AALI-01 8 48843269 48843269 C G PRKDC Missense_Mutation p.D619H 0.14 probably_damaging(1) TCGA-3C-AALI-01 8 55533607 55533607 G C RP1 Missense_Mutation p.L27F 0.26 tolerated(0.65) benign(0.008) TCGA-3C-AALI-01 8 68111261 68111261 G A ARFGEF1 Missense_Mutation p.R1820C 0.18 deleterious(0) probably_damaging(0.983) TCGA-3C-AALI-01 8 7308220 7308220 C T SPAG11B 3'UTR 0.19 TCGA-3C-AALI-01 8 77617900 77617900 C T ZFHX4 Missense_Mutation p.S526L 0.12 possibly_damaging(0.519) TCGA-3C-AALI-01 8 82196858 82196858 C T FABP5 3'UTR 0.21 TCGA-3C-AALI-01 8 88365996 88365996 G C CNBD1 Missense_Mutation p.E429Q 0.36 tolerated(0.08) possibly_damaging(0.904) TCGA-3C-AALI-01 8 92378834 92378834 C G SLC26A7 Missense_Mutation p.I505M 0.18 tolerated(0.07) possibly_damaging(0.655) TCGA-3C-AALI-01 8 96167920 96167920 G C PLEKHF2 3'UTR 0.17 TCGA-3C-AALI-01 9 114345755 114345755 G A PTGR1 Silent p.L164L 0.12 TCGA-3C-AALI-01 9 115095892 115095892 A G PTBP3 5'Flank 0.22 TCGA-3C-AALI-01 9 119124987 119124987 C G PAPPA Silent p.L1488L 0.42 TCGA-3C-AALI-01 9 123675603 123675603 C T TRAF1 Intron 0.09 TCGA-3C-AALI-01 9 125273635 125273635 C G OR1J2 Silent p.L185L 0.45 TCGA-3C-AALI-01 9 125616142 125616142 C A RC3H2 Intron 0.31 TCGA-3C-AALI-01 9 12821875 12821875 G A LURAP1L 3'UTR 0.38 TCGA-3C-AALI-01 9 129600290 129600290 C T ZBTB43 3'UTR 0.16 TCGA-3C-AALI-01 9 130569934 130569934 G C FPGS Missense_Mutation p.E237D 0.36 tolerated(0.22) possibly_damaging(0.498) TCGA-3C-AALI-01 9 130586594 130586594 C T ENG Missense_Mutation p.E375K 0.43 tolerated(0.25) benign(0.013) TCGA-3C-AALI-01 9 131670149 131670149 G A LRRC8A Missense_Mutation p.E236K 0.06 deleterious(0) probably_damaging(0.971) TCGA-3C-AALI-01 9 16412157 16412157 C T BNC2 3'UTR 0.71 TCGA-3C-AALI-01 9 32631326 32631326 G A TAF1L Missense_Mutation p.L1418F 0.06 deleterious(0.02) possibly_damaging(0.604) TCGA-3C-AALI-01 9 35263 35263 C G FAM138C Intron 0.11 TCGA-3C-AALI-01 9 77400927 77400927 G A TRPM6 Nonsense_Mutation p.R928* 0.17 TCGA-3C-AALI-01 9 8375991 8375991 G C PTPRD Missense_Mutation p.R1536G 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-3C-AALI-01 9 8375993 8375993 A T PTPRD Nonsense_Mutation p.L1535* 0.26 TCGA-3C-AALI-01 9 96278326 96278326 C G FAM120A Missense_Mutation p.S398C 0.32 deleterious(0.03) possibly_damaging(0.478) TCGA-3C-AALI-01 9 96440342 96440342 C G PHF2 3'UTR 0.25 TCGA-3C-AALI-01 9 96857621 96857621 G A PTPDC1 Nonsense_Mutation p.W211* 0.12 TCGA-3C-AALI-01 9 96860013 96860013 G C PTPDC1 Missense_Mutation p.E387Q 0.40 deleterious(0.03) possibly_damaging(0.662) TCGA-3C-AALI-01 9 97062161 97062161 C G ZNF169 Silent p.L107L 0.15 TCGA-3C-AALI-01 X 110039065 110039065 G A CHRDL1 5'Flank 0.17 TCGA-3C-AALI-01 X 11316905 11316905 C A AMELX Missense_Mutation p.Q142K 0.52 tolerated(0.08) unknown(0) TCGA-3C-AALI-01 X 117805046 117805046 G - DOCK11 Frame_Shift_Del p.E1713Kfs*2 0.30 TCGA-3C-AALI-01 X 118148277 118148277 C G LONRF3 Silent p.L694L 0.39 TCGA-3C-AALI-01 X 118752730 118752730 C T SEPT6 Missense_Mutation p.E434K 0.53 deleterious_low_confidence(0.02) benign(0.007) TCGA-3C-AALI-01 X 123697601 123697601 C T TENM1 Missense_Mutation p.R762Q 0.49 tolerated(0.2) benign(0.001) TCGA-3C-AALI-01 X 13641955 13641955 C G EGFL6 Missense_Mutation p.S400W 0.63 tolerated(0.06) probably_damaging(0.99) TCGA-3C-AALI-01 X 13794366 13794366 G T GPM6B Silent p.V276V 0.47 TCGA-3C-AALI-01 X 14862067 14862067 G A FANCB Silent p.L734L 0.19 TCGA-3C-AALI-01 X 153670430 153670430 G C GDI1 Intron 0.27 TCGA-3C-AALI-01 X 1546987 1546987 C G ASMTL Missense_Mutation p.Q179H 0.21 deleterious(0) probably_damaging(0.996) TCGA-3C-AALI-01 X 17095483 17095483 G C REPS2 Missense_Mutation p.R490T 0.23 deleterious(0) probably_damaging(0.999) TCGA-3C-AALI-01 X 36385096 36385096 G A CXorf30 Silent p.L459L 0.23 TCGA-3C-AALI-01 X 40496356 40496356 G C CXorf38 Missense_Mutation p.S175C 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-3C-AALI-01 X 44942708 44942708 G T KDM6A Missense_Mutation p.W1096C 0.28 deleterious(0) probably_damaging(0.966) TCGA-3C-AALI-01 X 47230132 47230132 C G ZNF157 Missense_Mutation p.S22C 0.69 deleterious(0.03) benign(0.237) TCGA-3C-AALI-01 X 47979487 47979487 G A SSX6 RNA 0.70 TCGA-3C-AALI-01 X 48755543 48755543 G T PQBP1 5'UTR 0.19 TCGA-3C-AALI-01 X 49075837 49075837 G A CACNA1F Silent p.L883L 0.21 TCGA-3C-AALI-01 X 49143662 49143662 C G PPP1R3F 3'UTR 0.29 TCGA-3C-AALI-01 X 51075857 51075857 G C NUDT10 Missense_Mutation p.E14Q 0.24 deleterious(0.01) possibly_damaging(0.618) TCGA-3C-AALI-01 X 51151192 51151192 A C CXorf67 Silent p.R442R 0.22 TCGA-3C-AALI-01 X 53577882 53577882 G A HUWE1 Missense_Mutation p.S3122F 0.35 possibly_damaging(0.485) TCGA-3C-AALI-01 X 54949555 54949555 T C TRO Missense_Mutation p.I197T 0.20 tolerated(0.06) unknown(0) TCGA-3C-AALI-01 X 54949565 54949565 C A TRO Silent p.I200I 0.19 TCGA-3C-AALI-01 X 72783110 72783110 G A CHIC1 5'UTR 0.55 TCGA-3C-AALI-01 X 73071460 73071460 G C XIST RNA 0.37 TCGA-3C-AALI-01 X 74742831 74742831 G C ZDHHC15 Missense_Mutation p.S10C 0.48 deleterious(0.01) benign(0.345) TCGA-3C-AALI-01 X 9693838 9693838 G A GPR143 Missense_Mutation p.S388F 0.64 tolerated_low_confidence(0.09) benign(0.025) TCGA-3C-AALJ-01 10 123324964 123324964 C T FGFR2 Missense_Mutation p.V122M 0.38 deleterious(0.01) possibly_damaging(0.658) TCGA-3C-AALJ-01 10 127426938 127426938 G A EDRF1 Silent p.P635P 0.56 TCGA-3C-AALJ-01 10 22016857 22016857 G T MLLT10 Missense_Mutation p.R688L 0.18 tolerated(0.07) possibly_damaging(0.83) TCGA-3C-AALJ-01 10 75490208 75490208 G A RP11-464F9.1 RNA 0.29 TCGA-3C-AALJ-01 10 8115919 8115920 - G GATA3 Frame_Shift_Ins p.H424Afs*84 0.12 TCGA-3C-AALJ-01 11 117159823 117159823 A T BACE1 3'UTR 0.18 TCGA-3C-AALJ-01 11 6500411 6500411 T G ARFIP2 Missense_Mutation p.K92Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-3C-AALJ-01 12 115117378 115117380 TAT A TBX3 Frame_Shift_Del p.Y265Lfs*12 0.30 TCGA-3C-AALJ-01 12 31944230 31944230 A T H3F3C 3'UTR 0.06 TCGA-3C-AALJ-01 12 49438227 49438227 G T KMT2D Missense_Mutation p.T1681N 0.19 possibly_damaging(0.791) TCGA-3C-AALJ-01 12 54107502 54107502 C A CALCOCO1 Missense_Mutation p.D592Y 0.30 deleterious(0) possibly_damaging(0.869) TCGA-3C-AALJ-01 12 56143343 56143343 G A GDF11 Missense_Mutation p.G301S 0.16 tolerated(0.05) benign(0.296) TCGA-3C-AALJ-01 14 35074801 35074801 C A SNX6 Splice_Site p.X143_splice 0.38 TCGA-3C-AALJ-01 14 45584513 45584513 A T PRPF39 3'UTR 0.12 TCGA-3C-AALJ-01 14 52471979 52471979 C A NID2 3'UTR 0.18 TCGA-3C-AALJ-01 15 45983256 45983256 A G SQRDL 3'UTR 0.16 TCGA-3C-AALJ-01 15 81221398 81221398 A T KIAA1199 Missense_Mutation p.E832V 0.66 deleterious(0.03) possibly_damaging(0.821) TCGA-3C-AALJ-01 16 10788469 10788469 G A TEKT5 Missense_Mutation p.R88C 0.34 deleterious(0.04) possibly_damaging(0.787) TCGA-3C-AALJ-01 16 21698939 21698939 G A OTOA Missense_Mutation p.R202Q 0.30 tolerated(0.73) benign(0.002) TCGA-3C-AALJ-01 16 71967827 71967827 A G RP11-498D10.6 3'Flank 0.21 TCGA-3C-AALJ-01 17 18397714 18397714 G A LGALS9C 3'UTR 0.17 TCGA-3C-AALJ-01 17 45885351 45885352 AG - OSBPL7 3'UTR 0.16 TCGA-3C-AALJ-01 17 46654020 46654020 C A HOXB4 3'UTR 0.06 TCGA-3C-AALJ-01 17 60021750 60021750 A T MED13 3'UTR 0.12 TCGA-3C-AALJ-01 17 76235899 76235899 C T TMEM235 3'UTR 0.11 TCGA-3C-AALJ-01 19 13482555 13482555 G A CACNA1A Missense_Mutation p.T193M 0.19 probably_damaging(0.968) TCGA-3C-AALJ-01 19 19616972 19616972 C T GATAD2A 3'UTR 0.16 TCGA-3C-AALJ-01 19 42814520 42814520 G C PRR19 Silent p.G233G 0.15 TCGA-3C-AALJ-01 19 48058958 48058958 C T ZNF541 Silent p.L52L 0.19 TCGA-3C-AALJ-01 19 8389596 8389596 A G KANK3 Missense_Mutation p.M734T 0.36 deleterious(0) benign(0.092) TCGA-3C-AALJ-01 1 12888567 12888567 G C PRAMEF11 5'UTR 0.25 TCGA-3C-AALJ-01 1 145293198 145293198 G A NBPF10 5'Flank 0.03 TCGA-3C-AALJ-01 1 150204119 150204119 C T ANP32E Missense_Mutation p.R67Q 0.22 tolerated(0.09) possibly_damaging(0.545) TCGA-3C-AALJ-01 1 151535096 151535098 CTC - TUFT1 In_Frame_Del p.H57_S58delinsQ 0.15 TCGA-3C-AALJ-01 1 205225465 205225465 C T TMCC2 Intron 0.08 TCGA-3C-AALJ-01 1 207225564 207225564 A G YOD1 5'Flank 0.19 TCGA-3C-AALJ-01 1 29016621 29016621 A G GMEB1 Missense_Mutation p.Y55C 0.19 tolerated(0.19) probably_damaging(0.996) TCGA-3C-AALJ-01 20 42698220 42698220 A C TOX2 3'Flank 0.13 TCGA-3C-AALJ-01 20 43533619 43533619 G T YWHAB Silent p.S145S 0.33 TCGA-3C-AALJ-01 2 113832828 113832828 G A IL1F10 Missense_Mutation p.A116T 0.41 deleterious(0.03) possibly_damaging(0.817) TCGA-3C-AALJ-01 2 179559380 179559380 C G TTN Missense_Mutation p.V10458L 0.38 TCGA-3C-AALJ-01 2 180409657 180409657 C T ZNF385B Missense_Mutation p.R98H 0.20 tolerated(0.15) benign(0.109) TCGA-3C-AALJ-01 3 107463552 107463552 G T BBX Missense_Mutation p.A249S 0.05 tolerated(0.06) possibly_damaging(0.848) TCGA-3C-AALJ-01 3 125651539 125651539 A C ALG1L Silent p.L38L 0.06 TCGA-3C-AALJ-01 3 132395454 132395454 G A UBA5 3'UTR 0.29 TCGA-3C-AALJ-01 3 148804136 148804136 G A HLTF 5'UTR 0.11 TCGA-3C-AALJ-01 3 195460262 195460262 C T MUC20 3'UTR 0.18 TCGA-3C-AALJ-01 3 197518316 197518316 C T LRCH3 Missense_Mutation p.A56V 0.32 deleterious(0) benign(0.312) TCGA-3C-AALJ-01 4 128651624 128651624 G A SLC25A31 5'UTR 0.48 TCGA-3C-AALJ-01 4 79768356 79768356 C T BMP2K Missense_Mutation p.S228L 0.18 deleterious(0) probably_damaging(0.992) TCGA-3C-AALJ-01 4 99064314 99064314 G A STPG2 5'UTR 0.25 TCGA-3C-AALJ-01 5 115781579 115781579 C T SEMA6A 3'UTR 0.35 TCGA-3C-AALJ-01 5 57752411 57752412 CT - PLK2 Frame_Shift_Del p.R387Sfs*3 0.33 TCGA-3C-AALJ-01 6 122753571 122753571 A G HSF2 3'UTR 0.57 TCGA-3C-AALJ-01 6 30638988 30638988 G A DHX16 Silent p.L91L 0.09 TCGA-3C-AALJ-01 6 54001777 54001777 C G MLIP Intron 0.17 TCGA-3C-AALJ-01 6 54001912 54001912 C A MLIP Intron 0.21 TCGA-3C-AALJ-01 6 54001965 54001965 C T MLIP Intron 0.27 TCGA-3C-AALJ-01 6 54002135 54002135 C G MLIP Intron 0.19 TCGA-3C-AALJ-01 6 54002267 54002267 C G MLIP Intron 0.15 TCGA-3C-AALJ-01 6 54002393 54002393 C G MLIP Intron 0.12 TCGA-3C-AALJ-01 6 54002825 54002825 C G MLIP Intron 0.13 TCGA-3C-AALJ-01 6 54002862 54002862 C A MLIP Intron 0.12 TCGA-3C-AALJ-01 6 54003080 54003080 C G MLIP Intron 0.19 TCGA-3C-AALJ-01 6 90638598 90638598 A T BACH2 3'UTR 0.07 TCGA-3C-AALJ-01 8 38285469 38285469 G C FGFR1 Missense_Mutation p.F228L 0.13 tolerated(0.1) benign(0.073) TCGA-3C-AALJ-01 8 71486853 71486853 A C TRAM1 3'UTR 0.05 TCGA-3C-AALJ-01 8 77761945 77761945 G T ZFHX4 Missense_Mutation p.M1281I 0.10 benign(0.043) TCGA-3C-AALJ-01 9 111795669 111795683 TGGAAGCAACCACAA - TMEM245 In_Frame_Del p.L833_N838delinsH 0.12 TCGA-3C-AALJ-01 9 112931379 112931379 C A PALM2-AKAP2 3'UTR 0.09 TCGA-3C-AALJ-01 9 93375893 93375893 G A DIRAS2 Missense_Mutation p.R73W 0.11 deleterious(0) probably_damaging(1) TCGA-3C-AALJ-01 X 48126410 48126410 C T SSX1 3'UTR 0.49 TCGA-3C-AALK-01 10 119003700 119003700 C A SLC18A2 Missense_Mutation p.P114T 0.27 tolerated(0.26) benign(0.01) TCGA-3C-AALK-01 10 50819890 50819890 C T SLC18A3 Silent p.G368G 0.30 TCGA-3C-AALK-01 10 86001137 86001137 C T LRIT1 Missense_Mutation p.R20Q 0.15 tolerated(0.36) benign(0.003) TCGA-3C-AALK-01 11 36599272 36599272 A T RAG1 3'UTR 0.21 TCGA-3C-AALK-01 12 10228130 10228130 C T CLEC1A Missense_Mutation p.M172I 0.08 deleterious(0.02) possibly_damaging(0.609) TCGA-3C-AALK-01 12 112694174 112694174 G A HECTD4 Silent p.L947L 0.26 TCGA-3C-AALK-01 12 1137067 1137067 A G ERC1 5'UTR 0.23 TCGA-3C-AALK-01 12 28603298 28603301 TGTT - CCDC91 Frame_Shift_Del p.C291Wfs*12 0.27 TCGA-3C-AALK-01 12 57490754 57490754 G C STAT6 Missense_Mutation p.L745V 0.11 tolerated_low_confidence(0.13) benign(0.003) TCGA-3C-AALK-01 12 64828353 64828353 T A XPOT Missense_Mutation p.I840N 0.10 deleterious(0.02) benign(0.192) TCGA-3C-AALK-01 12 8927604 8927604 T C RIMKLB 3'UTR 0.25 TCGA-3C-AALK-01 12 93166328 93166328 A T EEA1 3'UTR 0.15 TCGA-3C-AALK-01 14 57280124 57280124 G A OTX2 5'Flank 0.21 TCGA-3C-AALK-01 16 70191506 70191506 G T PDPR 3'UTR 0.23 TCGA-3C-AALK-01 17 12028638 12028638 C T MAP2K4 Nonsense_Mutation p.R281* 0.45 TCGA-3C-AALK-01 17 16097865 16097865 G A NCOR1 Missense_Mutation p.P7S 0.25 benign(0.406) TCGA-3C-AALK-01 17 56332200 56332200 G T LPO Silent p.L378L 0.15 TCGA-3C-AALK-01 17 58343435 58343435 C T USP32 Missense_Mutation p.D277N 0.19 deleterious(0) benign(0.282) TCGA-3C-AALK-01 17 59489650 59489650 C T C17orf82 Missense_Mutation p.S105F 0.21 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-3C-AALK-01 17 73774213 73774213 A T H3F3B 3'UTR 0.06 TCGA-3C-AALK-01 18 59170221 59170221 G A CDH20 Missense_Mutation p.E233K 0.11 deleterious(0) probably_damaging(0.998) TCGA-3C-AALK-01 19 46056805 46056805 G A OPA3 Intron 0.32 TCGA-3C-AALK-01 19 58386121 58386121 G A ZNF814 Missense_Mutation p.H213Y 0.15 tolerated(0.18) benign(0.002) TCGA-3C-AALK-01 19 6903930 6903930 G T EMR1 Missense_Mutation p.L257F 0.12 tolerated(0.16) possibly_damaging(0.835) TCGA-3C-AALK-01 19 9297303 9297303 C A OR7D2 Silent p.T282T 0.19 TCGA-3C-AALK-01 19 9434892 9434892 G A ZNF559 5'Flank 0.19 TCGA-3C-AALK-01 1 165634356 165634356 C T ALDH9A1 Missense_Mutation p.R454Q 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-3C-AALK-01 1 89449031 89449031 G C RBMXL1 Missense_Mutation p.P160R 0.33 deleterious(0) probably_damaging(0.953) TCGA-3C-AALK-01 20 34809805 34809805 C G EPB41L1 Missense_Mutation p.S820C 0.17 deleterious(0) probably_damaging(0.963) TCGA-3C-AALK-01 20 62076095 62076095 G T KCNQ2 Missense_Mutation p.L203M 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-3C-AALK-01 22 18111479 18111479 G A ATP6V1E1 5'UTR 0.43 TCGA-3C-AALK-01 22 25293995 25293995 G C SGSM1 Missense_Mutation p.E748D 0.20 tolerated(0.51) benign(0.005) TCGA-3C-AALK-01 22 42128300 42128300 T C MEI1 Missense_Mutation p.I383T 0.35 tolerated(0.46) benign(0) TCGA-3C-AALK-01 2 162273521 162273521 G A TBR1 Silent p.V200V 0.14 TCGA-3C-AALK-01 2 186671467 186671467 T C FSIP2 Missense_Mutation p.C5901R 0.17 benign(0.001) TCGA-3C-AALK-01 2 219000422 219000422 G A CXCR2 Missense_Mutation p.E300K 0.26 tolerated(0.14) benign(0.064) TCGA-3C-AALK-01 2 47378462 47378462 C G C2orf61 Missense_Mutation p.V112L 0.10 tolerated(0.41) benign(0.002) TCGA-3C-AALK-01 2 69685581 69685581 G C RP11-427H3.3 RNA 0.17 TCGA-3C-AALK-01 3 101312444 101312444 C T PCNP 3'UTR 0.28 TCGA-3C-AALK-01 3 151171490 151171490 G A IGSF10 Nonsense_Mutation p.R133* 0.05 TCGA-3C-AALK-01 3 167248986 167248986 C T WDR49 Missense_Mutation p.R360H 0.34 tolerated(0.56) benign(0.001) TCGA-3C-AALK-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-3C-AALK-01 3 178951957 178951957 G T PIK3CA Missense_Mutation p.M1004I 0.19 deleterious(0.01) benign(0.331) TCGA-3C-AALK-01 4 148594871 148594871 T C PRMT10 Missense_Mutation p.I165V 0.07 tolerated(1) benign(0) TCGA-3C-AALK-01 4 157688930 157688930 G A PDGFC Missense_Mutation p.H306Y 0.17 tolerated(0.05) probably_damaging(0.966) TCGA-3C-AALK-01 5 140581434 140581434 C T PCDHB11 Missense_Mutation p.S696L 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.734) TCGA-3C-AALK-01 5 24511480 24511480 C T CDH10 Missense_Mutation p.V320M 0.20 tolerated(0.21) benign(0.004) TCGA-3C-AALK-01 5 2748752 2748752 G A IRX2 Missense_Mutation p.A357V 0.31 tolerated(0.23) benign(0.255) TCGA-3C-AALK-01 5 54552317 54552318 CA - DHX29 Frame_Shift_Del p.*1370K 0.19 TCGA-3C-AALK-01 5 72742608 72742608 C G FOXD1 3'UTR 0.08 TCGA-3C-AALK-01 5 76988926 76988927 AC - TBCA Intron 0.17 TCGA-3C-AALK-01 5 79769572 79769572 G C ZFYVE16 Splice_Site p.X1396_splice 0.23 TCGA-3C-AALK-01 5 96084244 96084244 T C CAST Missense_Mutation p.I411T 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-3C-AALK-01 6 116566464 116566464 C T NT5DC1 3'UTR 0.26 TCGA-3C-AALK-01 6 169650833 169650833 G A THBS2 Missense_Mutation p.T16M 0.29 tolerated_low_confidence(0.26) benign(0.075) TCGA-3C-AALK-01 6 170140321 170140321 T C TCTE3 Missense_Mutation p.Y186C 0.16 deleterious(0) probably_damaging(1) TCGA-3C-AALK-01 6 27775675 27775675 G C HIST1H2BL Missense_Mutation p.L4V 0.12 tolerated_low_confidence(0.39) benign(0.031) TCGA-3C-AALK-01 6 27805865 27805866 - C HIST1H2AK Frame_Shift_Ins p.Q85Afs*16 0.13 TCGA-3C-AALK-01 7 36194238 36194238 G A EEPD1 Missense_Mutation p.S102N 0.29 tolerated(0.1) benign(0.03) TCGA-3C-AALK-01 7 99032747 99032747 C T ATP5J2-PTCD1 Missense_Mutation p.R89Q 0.07 tolerated_low_confidence(0.35) benign(0.002) TCGA-3C-AALK-01 9 132481526 132481526 G A PRRX2 Silent p.P92P 0.16 TCGA-3C-AALK-01 9 14842533 14842533 G A FREM1 Missense_Mutation p.R507C 0.25 deleterious(0) probably_damaging(0.927) TCGA-3C-AALK-01 9 34370840 34370840 G A KIAA1161 Missense_Mutation p.P667L 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-3C-AALK-01 9 97055323 97055323 G T ZNF169 Missense_Mutation p.E76D 0.14 tolerated(0.09) benign(0.11) TCGA-3C-AALK-01 X 127186090 127186090 G A ACTRT1 Silent p.R32R 0.07 TCGA-3C-AALK-01 X 45605653 45605653 C A MIR221 RNA 0.09 TCGA-3C-AALK-01 X 48935193 48935193 G A WDR45 Intron 0.23 TCGA-3C-AALK-01 X 53631627 53631627 C T HUWE1 Missense_Mutation p.A889T 0.31 benign(0.064) TCGA-4H-AAAK-01 10 22031111 22031111 A G MLLT10 3'UTR 0.24 TCGA-4H-AAAK-01 10 48390805 48390805 G A RBP3 Missense_Mutation p.P25S 0.12 tolerated(0.18) possibly_damaging(0.641) TCGA-4H-AAAK-01 10 93619301 93619301 T C TNKS2 Silent p.I1059I 0.05 TCGA-4H-AAAK-01 16 1292187 1292187 C G TPSAB1 Silent p.T258T 0.35 TCGA-4H-AAAK-01 16 68853329 68853329 G T CDH1 Splice_Site p.X571_splice 0.41 TCGA-4H-AAAK-01 17 1486514 1486514 G A SLC43A2 Missense_Mutation p.P445L 0.32 deleterious(0.03) benign(0.174) TCGA-4H-AAAK-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.36 deleterious(0.05) benign(0.006) TCGA-4H-AAAK-01 17 42928173 42928173 C T EFTUD2 3'UTR 0.10 TCGA-4H-AAAK-01 19 11623909 11623909 T C ECSIT Missense_Mutation p.M234V 0.32 tolerated(0.08) benign(0.023) TCGA-4H-AAAK-01 19 42754092 42754092 T C ERF Missense_Mutation p.Y87C 0.43 deleterious(0) probably_damaging(1) TCGA-4H-AAAK-01 19 58213199 58213199 C T ZNF154 Missense_Mutation p.R373Q 0.23 tolerated(0.3) benign(0.003) TCGA-4H-AAAK-01 19 8201386 8201386 T C FBN3 Missense_Mutation p.I411V 0.25 tolerated(0.59) benign(0.027) TCGA-4H-AAAK-01 1 182025752 182025752 C T ZNF648 Missense_Mutation p.R465H 0.31 tolerated(0.08) possibly_damaging(0.465) TCGA-4H-AAAK-01 1 202569587 202569587 C T SYT2 Missense_Mutation p.D273N 0.40 deleterious(0) benign(0.039) TCGA-4H-AAAK-01 1 5937277 5937277 C T NPHP4 Missense_Mutation p.G898D 0.47 tolerated(0.1) possibly_damaging(0.462) TCGA-4H-AAAK-01 21 11029707 11029707 C T BAGE2 RNA 0.05 TCGA-4H-AAAK-01 2 108925025 108925025 T A SULT1C2 3'UTR 0.25 TCGA-4H-AAAK-01 2 223169567 223169567 G T CCDC140 3'UTR 0.26 TCGA-4H-AAAK-01 3 196744024 196744024 G A MFI2 Missense_Mutation p.R284W 0.13 deleterious(0) probably_damaging(0.985) TCGA-4H-AAAK-01 4 152097811 152097811 T A SH3D19 5'UTR 0.28 TCGA-4H-AAAK-01 4 174225235 174225235 C T GALNT7 Missense_Mutation p.P452L 0.08 deleterious(0.04) benign(0.155) TCGA-4H-AAAK-01 4 89383414 89383414 G T HERC5 Nonsense_Mutation p.G199* 0.37 TCGA-4H-AAAK-01 5 140476090 140476090 G A PCDHB2 Silent p.A572A 0.40 TCGA-4H-AAAK-01 5 141334937 141334937 C T PCDH12 Missense_Mutation p.R827H 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-4H-AAAK-01 7 150647078 150647078 G A KCNH2 Intron 0.24 TCGA-4H-AAAK-01 7 4824628 4824628 C T AP5Z1 Missense_Mutation p.R294W 0.09 deleterious(0) probably_damaging(0.996) TCGA-4H-AAAK-01 8 127569434 127569434 C A FAM84B Silent p.P67P 0.37 TCGA-4H-AAAK-01 9 118068238 118068238 A G DEC1 5'UTR 0.05 TCGA-4H-AAAK-01 9 26994534 26994535 - A LRRC19 3'UTR 0.38 TCGA-4H-AAAK-01 9 35700042 35700042 G T TLN1 Silent p.R2233R 0.22 TCGA-4H-AAAK-01 9 4850331 4850331 G A RCL1 Intron 0.22 TCGA-4H-AAAK-01 X 12739901 12739901 C T FRMPD4 3'UTR 0.40 TCGA-4H-AAAK-01 X 135747994 135747994 C T ARHGEF6 3'UTR 0.16 TCGA-4H-AAAK-01 X 53576434 53576434 C T HUWE1 Missense_Mutation p.R3174H 0.29 possibly_damaging(0.522) TCGA-5L-AAT0-01 10 101554167 101554167 C T ABCC2 Intron 0.11 TCGA-5L-AAT0-01 10 105215310 105215310 G A CALHM1 Silent p.F250F 0.29 TCGA-5L-AAT0-01 10 105845535 105845535 C G COL17A1 5'UTR 0.10 TCGA-5L-AAT0-01 10 72637256 72637256 C T SGPL1 3'UTR 0.16 TCGA-5L-AAT0-01 10 75404795 75404795 G A SYNPO2L 3'UTR 0.22 TCGA-5L-AAT0-01 10 79781741 79781741 C T POLR3A Missense_Mutation p.D309N 0.32 tolerated(0.31) benign(0.009) TCGA-5L-AAT0-01 11 101918201 101918201 G A C11orf70 5'UTR 0.16 TCGA-5L-AAT0-01 11 114121312 114121312 C T ZBTB16 3'UTR 0.30 TCGA-5L-AAT0-01 11 118916320 118916320 C T HYOU1 Silent p.K995K 0.11 TCGA-5L-AAT0-01 11 122852169 122852169 G A BSX Missense_Mutation p.H71Y 0.16 tolerated(0.86) benign(0.185) TCGA-5L-AAT0-01 11 125359500 125359500 G T FEZ1 Silent p.S58S 0.22 TCGA-5L-AAT0-01 11 130108341 130108341 G A ZBTB44 Missense_Mutation p.S422L 0.10 deleterious(0) probably_damaging(0.995) TCGA-5L-AAT0-01 11 18750461 18750461 A G PTPN5 3'UTR 0.17 TCGA-5L-AAT0-01 11 30033073 30033073 C T KCNA4 Missense_Mutation p.E385K 0.11 deleterious(0) probably_damaging(0.987) TCGA-5L-AAT0-01 11 3249936 3249936 C T MRGPRE Missense_Mutation p.E31K 0.15 tolerated(0.38) probably_damaging(0.97) TCGA-5L-AAT0-01 11 47498410 47498410 C T CELF1 Missense_Mutation p.G357S 0.10 tolerated(0.33) probably_damaging(0.931) TCGA-5L-AAT0-01 11 47711675 47711675 C T AGBL2 Silent p.L528L 0.17 TCGA-5L-AAT0-01 11 55798629 55798629 C T OR5AS1 Silent p.L245L 0.08 TCGA-5L-AAT0-01 11 56237247 56237247 G A OR5M3 Silent p.L243L 0.09 TCGA-5L-AAT0-01 11 59564840 59564840 G C STX3 3'UTR 0.10 TCGA-5L-AAT0-01 11 6541352 6541352 G A DNHD1 Intron 0.15 TCGA-5L-AAT0-01 11 78285417 78285417 C T NARS2 Silent p.A39A 0.07 TCGA-5L-AAT0-01 11 82896654 82896654 A T PCF11 3'UTR 0.05 TCGA-5L-AAT0-01 11 85374084 85374084 G A CREBZF 3'UTR 0.20 TCGA-5L-AAT0-01 12 102590796 102590796 C A PMCH Nonsense_Mutation p.E135* 0.10 TCGA-5L-AAT0-01 12 109577420 109577420 A C ACACB Silent p.T70T 0.34 TCGA-5L-AAT0-01 12 112237855 112237855 C T ALDH2 Missense_Mutation p.A465V 0.20 tolerated(0.09) benign(0.371) TCGA-5L-AAT0-01 12 119594432 119594432 G C SRRM4 Silent p.R555R 0.24 TCGA-5L-AAT0-01 12 120966776 120966776 C G COQ5 Missense_Mutation p.E57Q 0.15 tolerated(0.8) benign(0.173) TCGA-5L-AAT0-01 12 12509638 12509638 C T LOH12CR2 3'UTR 0.21 TCGA-5L-AAT0-01 12 22213823 22213823 G C CMAS Missense_Mutation p.D251H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT0-01 12 27078711 27078711 C A ASUN Missense_Mutation p.D220Y 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-5L-AAT0-01 12 50535844 50535844 G A CERS5 Missense_Mutation p.L162F 0.05 deleterious(0) probably_damaging(0.93) TCGA-5L-AAT0-01 12 51754565 51754565 G A GALNT6 Silent p.I369I 0.15 TCGA-5L-AAT0-01 12 53494935 53494935 G A IGFBP6 Silent p.R197R 0.12 TCGA-5L-AAT0-01 12 54340107 54340107 C G HOXC13 3'UTR 0.18 TCGA-5L-AAT0-01 12 56078803 56078803 G A ITGA7 3'UTR 0.18 TCGA-5L-AAT0-01 12 56233359 56233359 G T MMP19 Silent p.L229L 0.13 TCGA-5L-AAT0-01 12 64724804 64724804 C T C12orf56 Missense_Mutation p.E142K 0.34 tolerated(0.66) benign(0.143) TCGA-5L-AAT0-01 12 80899828 80899828 C T PTPRQ Silent p.I762I 0.21 TCGA-5L-AAT0-01 12 89997568 89997568 G C ATP2B1 Silent p.L923L 0.17 TCGA-5L-AAT0-01 12 96076492 96076492 G A NTN4 Silent p.L501L 0.14 TCGA-5L-AAT0-01 12 96077463 96077463 G A NTN4 Missense_Mutation p.S402L 0.22 deleterious(0) probably_damaging(0.969) TCGA-5L-AAT0-01 12 96077464 96077464 A T NTN4 Missense_Mutation p.S402T 0.22 tolerated(0.19) benign(0.437) TCGA-5L-AAT0-01 12 97078431 97078431 C T C12orf55 Missense_Mutation p.L1908F 0.07 deleterious(0.03) probably_damaging(0.964) TCGA-5L-AAT0-01 13 38145552 38145552 G C POSTN Missense_Mutation p.F711L 0.14 tolerated_low_confidence(0.21) benign(0.003) TCGA-5L-AAT0-01 13 49822120 49822120 G C CDADC1 5'UTR 0.26 TCGA-5L-AAT0-01 13 50296673 50296673 G C KPNA3 Missense_Mutation p.L166V 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-5L-AAT0-01 13 50588926 50588926 G C TRIM13 3'Flank 0.25 TCGA-5L-AAT0-01 13 66877108 66877108 C T PCDH9 3'UTR 0.11 TCGA-5L-AAT0-01 13 80910355 80910355 C A SPRY2 3'UTR 0.24 TCGA-5L-AAT0-01 14 106962932 106962932 C G IGHV1-45 Missense_Mutation p.R117T 0.07 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT0-01 14 21511667 21511667 C G RNASE7 3'UTR 0.18 TCGA-5L-AAT0-01 14 23240532 23240532 G A OXA1L Silent p.R446R 0.14 TCGA-5L-AAT0-01 14 23548228 23548228 G C ACIN1 Missense_Mutation p.S661C 0.08 probably_damaging(0.974) TCGA-5L-AAT0-01 14 31818999 31818999 C G HEATR5A Missense_Mutation p.D609H 0.22 deleterious(0) probably_damaging(0.978) TCGA-5L-AAT0-01 14 64610553 64610553 C T SYNE2 Nonsense_Mutation p.Q5124* 0.06 TCGA-5L-AAT0-01 14 69558416 69558416 C T DCAF5 Missense_Mutation p.C285Y 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-5L-AAT0-01 14 93688679 93688679 G A UBR7 Missense_Mutation p.E382K 0.10 deleterious(0.03) possibly_damaging(0.761) TCGA-5L-AAT0-01 15 30112848 30112848 C T TJP1 Intron 0.07 TCGA-5L-AAT0-01 15 32819080 32819080 C G RP11-632K20.7 RNA 0.10 TCGA-5L-AAT0-01 15 40558409 40558409 C T PAK6 Missense_Mutation p.R191C 0.16 deleterious(0.02) possibly_damaging(0.794) TCGA-5L-AAT0-01 15 42479549 42479549 C T VPS39 Missense_Mutation p.V152M 0.19 deleterious(0.01) benign(0.381) TCGA-5L-AAT0-01 15 43038244 43038244 G A TTBK2 Missense_Mutation p.R1162C 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-5L-AAT0-01 15 43815277 43815277 G C MAP1A Missense_Mutation p.E536Q 0.15 probably_damaging(0.999) TCGA-5L-AAT0-01 15 48623778 48623778 G A DUT Silent p.A22A 0.26 TCGA-5L-AAT0-01 15 52842940 52842940 G C ARPP19 3'UTR 0.43 TCGA-5L-AAT0-01 15 77763314 77763314 G A HMG20A Silent p.Q171Q 0.12 TCGA-5L-AAT0-01 15 85406803 85406803 G C ALPK3 Missense_Mutation p.M1679I 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-5L-AAT0-01 15 90193108 90193108 G A KIF7 Silent p.I131I 0.05 TCGA-5L-AAT0-01 15 99459254 99459254 G C IGF1R Missense_Mutation p.K630N 0.07 deleterious(0) probably_damaging(0.918) TCGA-5L-AAT0-01 15 99459287 99459287 G C IGF1R Silent p.L641L 0.08 TCGA-5L-AAT0-01 16 24835763 24835763 G A TNRC6A 3'UTR 0.09 TCGA-5L-AAT0-01 16 30020533 30020533 C G DOC2A Missense_Mutation p.G136A 0.12 deleterious(0) possibly_damaging(0.601) TCGA-5L-AAT0-01 16 30021525 30021525 C T DOC2A Missense_Mutation p.D7N 0.15 tolerated(0.36) benign(0.002) TCGA-5L-AAT0-01 16 5108515 5108515 G C C16orf89 Silent p.L202L 0.14 TCGA-5L-AAT0-01 16 53269130 53269130 G C CHD9 Missense_Mutation p.D849H 0.10 possibly_damaging(0.847) TCGA-5L-AAT0-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.25 TCGA-5L-AAT0-01 16 88039843 88039843 C T BANP Silent p.N201N 0.10 TCGA-5L-AAT0-01 17 16703481 16703481 G A CCDC144A 3'UTR 0.16 TCGA-5L-AAT0-01 17 19318348 19318348 C T RNF112 Intron 0.32 TCGA-5L-AAT0-01 17 27589537 27589537 G C NUFIP2 3'UTR 0.05 TCGA-5L-AAT0-01 17 38855730 38855730 C T KRT24 Missense_Mutation p.E443K 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-5L-AAT0-01 17 42171057 42171057 G T HDAC5 Silent p.L81L 0.26 TCGA-5L-AAT0-01 17 4535566 4535566 G A ALOX15 Silent p.V517V 0.29 TCGA-5L-AAT0-01 17 62518970 62518970 C T CEP95 Missense_Mutation p.S289F 0.10 tolerated(0.09) benign(0.009) TCGA-5L-AAT0-01 17 7216753 7216753 G A GPS2 Nonsense_Mutation p.Q224* 0.17 TCGA-5L-AAT0-01 17 7606714 7606715 - G WRAP53 Frame_Shift_Ins p.A522Gfs*8 0.39 TCGA-5L-AAT0-01 17 77924297 77924297 C G TBC1D16 Missense_Mutation p.E390D 0.17 deleterious(0.01) possibly_damaging(0.701) TCGA-5L-AAT0-01 18 21483071 21483071 G A LAMA3 Silent p.L2100L 0.18 TCGA-5L-AAT0-01 18 43497780 43497780 C A EPG5 Nonsense_Mutation p.E1035* 0.24 TCGA-5L-AAT0-01 18 72103744 72103744 C T FAM69C Missense_Mutation p.E418K 0.31 tolerated_low_confidence(0.09) benign(0.015) TCGA-5L-AAT0-01 18 73130820 73130820 C T SMIM21 Missense_Mutation p.V61M 0.25 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-5L-AAT0-01 19 12807422 12807422 C G FBXW9 5'UTR 0.26 TCGA-5L-AAT0-01 19 19381853 19381853 G C TM6SF2 Silent p.V59V 0.17 TCGA-5L-AAT0-01 19 41381746 41381746 C T CYP2A7 Missense_Mutation p.R446K 0.12 tolerated(0.05) benign(0.183) TCGA-5L-AAT0-01 19 4268642 4268642 G C CCDC94 Silent p.L307L 0.19 TCGA-5L-AAT0-01 19 44652998 44652998 G T ZNF234 Missense_Mutation p.R30S 0.23 deleterious(0) benign(0.446) TCGA-5L-AAT0-01 19 47960710 47960710 C T SLC8A2 Missense_Mutation p.E273K 0.18 deleterious(0.03) benign(0.356) TCGA-5L-AAT0-01 19 54783309 54783309 C T LILRB2 Silent p.V183V 0.14 TCGA-5L-AAT0-01 19 55685915 55685915 G A SYT5 Silent p.F310F 0.08 TCGA-5L-AAT0-01 19 55739584 55739584 G T TMEM86B Silent p.L91L 0.19 TCGA-5L-AAT0-01 19 57966915 57966915 C T VN1R1 Missense_Mutation p.A314T 0.29 tolerated(0.45) benign(0.324) TCGA-5L-AAT0-01 19 59067484 59067484 G C UBE2M Missense_Mutation p.S175C 0.20 deleterious(0.01) benign(0.216) TCGA-5L-AAT0-01 19 7694440 7694440 G C XAB2 5'UTR 0.19 TCGA-5L-AAT0-01 19 7694712 7694712 G A PET100 5'UTR 0.24 TCGA-5L-AAT0-01 19 9009650 9009650 C T MUC16 Missense_Mutation p.E13026K 0.16 benign(0.344) TCGA-5L-AAT0-01 1 100818371 100818371 C A CDC14A 5'UTR 0.23 TCGA-5L-AAT0-01 1 11104993 11104993 G A MASP2 Intron 0.26 TCGA-5L-AAT0-01 1 11848672 11848672 G T MTHFR 3'UTR 0.13 TCGA-5L-AAT0-01 1 145542737 145542737 G A ITGA10 3'UTR 0.13 TCGA-5L-AAT0-01 1 146403750 146403750 G A NBPF12 Missense_Mutation p.E362K 0.10 probably_damaging(0.969) TCGA-5L-AAT0-01 1 152005230 152005230 C G S100A11 Missense_Mutation p.D76H 0.16 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT0-01 1 152005261 152005261 C T S100A11 Silent p.K65K 0.10 TCGA-5L-AAT0-01 1 152005294 152005294 C A S100A11 Missense_Mutation p.Q54H 0.09 deleterious(0.02) benign(0.063) TCGA-5L-AAT0-01 1 152382704 152382704 C T CRNN Missense_Mutation p.G285E 0.20 tolerated(0.16) benign(0.181) TCGA-5L-AAT0-01 1 166822667 166822667 A G POGK 3'UTR 0.26 TCGA-5L-AAT0-01 1 168278012 168278012 C T TBX19 Nonsense_Mutation p.Q317* 0.17 TCGA-5L-AAT0-01 1 169952459 169952459 C T KIFAP3 Missense_Mutation p.M486I 0.20 tolerated(0.08) benign(0.151) TCGA-5L-AAT0-01 1 186057810 186057810 C G HMCN1 Nonsense_Mutation p.S3217* 0.12 TCGA-5L-AAT0-01 1 193053747 193053747 G A TROVE2 Missense_Mutation p.M501I 0.12 deleterious(0.01) possibly_damaging(0.644) TCGA-5L-AAT0-01 1 204214116 204214116 G A PLEKHA6 Missense_Mutation p.S683L 0.11 tolerated(0.06) benign(0.158) TCGA-5L-AAT0-01 1 210273467 210273467 G C SYT14 Missense_Mutation p.Q320H 0.25 deleterious(0.03) possibly_damaging(0.637) TCGA-5L-AAT0-01 1 210502369 210502369 C T HHAT Silent p.L5L 0.14 TCGA-5L-AAT0-01 1 21183941 21183941 C G EIF4G3 Missense_Mutation p.K1048N 0.11 deleterious(0) probably_damaging(0.971) TCGA-5L-AAT0-01 1 216896587 216896587 C T ESRRG Intron 0.10 TCGA-5L-AAT0-01 1 230820907 230820907 C T COG2 Silent p.F435F 0.11 TCGA-5L-AAT0-01 1 244574683 244574683 C T ADSS Nonsense_Mutation p.W408* 0.10 TCGA-5L-AAT0-01 1 26755887 26755887 G A LIN28A 3'UTR 0.10 TCGA-5L-AAT0-01 1 27092809 27092809 C T ARID1A Nonsense_Mutation p.Q944* 0.07 TCGA-5L-AAT0-01 1 60301046 60301046 G A HOOK1 Missense_Mutation p.E146K 0.12 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT0-01 1 89655840 89655840 G A GBP4 Missense_Mutation p.P360S 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-5L-AAT0-01 1 990754 990754 C A AGRN 3'UTR 0.30 TCGA-5L-AAT0-01 1 990756 990756 G C AGRN 3'UTR 0.30 TCGA-5L-AAT0-01 20 1616097 1616097 G A SIRPG Silent p.T299T 0.20 TCGA-5L-AAT0-01 20 23402050 23402050 G A NAPB 5'UTR 0.20 TCGA-5L-AAT0-01 20 32677479 32677479 G A EIF2S2 3'UTR 0.09 TCGA-5L-AAT0-01 20 36151352 36151352 C T NNAT 3'UTR 0.18 TCGA-5L-AAT0-01 20 55966667 55966667 G A RBM38 Silent p.P10P 0.19 TCGA-5L-AAT0-01 21 45534070 45534070 G A PWP2 Silent p.A79A 0.21 TCGA-5L-AAT0-01 22 29446603 29446603 G A ZNRF3 Missense_Mutation p.E812K 0.08 deleterious_low_confidence(0.01) benign(0.222) TCGA-5L-AAT0-01 22 36701132 36701132 G A MYH9 Missense_Mutation p.P726S 0.22 benign(0.192) TCGA-5L-AAT0-01 2 103040853 103040853 T C IL18RAP Silent p.S186S 0.07 TCGA-5L-AAT0-01 2 125192218 125192218 C G CNTNAP5 Missense_Mutation p.I229M 0.22 deleterious(0.02) benign(0.417) TCGA-5L-AAT0-01 2 152314327 152314327 G A RIF1 Missense_Mutation p.G902E 0.25 deleterious(0.03) possibly_damaging(0.831) TCGA-5L-AAT0-01 2 152499104 152499104 C T NEB Missense_Mutation p.R2786K 0.16 probably_damaging(0.998) TCGA-5L-AAT0-01 2 158114898 158114898 G A GALNT5 Missense_Mutation p.E102K 0.19 tolerated(0.38) benign(0.004) TCGA-5L-AAT0-01 2 159312984 159312984 C G CCDC148 5'UTR 0.05 TCGA-5L-AAT0-01 2 166201333 166201333 T C SCN2A Missense_Mutation p.I944T 0.18 deleterious(0) benign(0.03) TCGA-5L-AAT0-01 2 175624089 175624089 C T CHRNA1 Silent p.Q68Q 0.10 TCGA-5L-AAT0-01 2 17922938 17922938 G A SMC6 Missense_Mutation p.S60L 0.25 deleterious(0.01) possibly_damaging(0.862) TCGA-5L-AAT0-01 2 179441920 179441920 C T TTN Missense_Mutation p.E23048K 0.28 TCGA-5L-AAT0-01 2 179613559 179613559 G A TTN Intron 0.20 TCGA-5L-AAT0-01 2 186670005 186670005 G A FSIP2 Silent p.K5413K 0.19 TCGA-5L-AAT0-01 2 215593595 215593595 C T BARD1 Silent p.V713V 0.08 TCGA-5L-AAT0-01 2 228228347 228228347 G C TM4SF20 3'UTR 0.26 TCGA-5L-AAT0-01 2 232329172 232329172 G A NCL 5'UTR 0.29 TCGA-5L-AAT0-01 2 232651170 232651170 C T COPS7B 5'UTR 0.22 TCGA-5L-AAT0-01 2 24181218 24181218 G A UBXN2A Missense_Mutation p.E12K 0.24 tolerated(0.22) benign(0.016) TCGA-5L-AAT0-01 2 47274473 47274473 G A TTC7A Intron 0.26 TCGA-5L-AAT0-01 2 53995075 53995075 C T CHAC2 Nonsense_Mutation p.Q18* 0.28 TCGA-5L-AAT0-01 2 66795825 66795825 G A MEIS1 Missense_Mutation p.D351N 0.19 deleterious(0) benign(0.061) TCGA-5L-AAT0-01 2 86444009 86444009 C G REEP1 3'UTR 0.17 TCGA-5L-AAT0-01 3 111923239 111923239 C G SLC9C1 Missense_Mutation p.M666I 0.24 deleterious(0.02) benign(0.056) TCGA-5L-AAT0-01 3 118906644 118906644 C T UPK1B Missense_Mutation p.A31V 0.09 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT0-01 3 126753693 126753693 T C PLXNA1 3'UTR 0.25 TCGA-5L-AAT0-01 3 131102075 131102075 G C NUDT16 3'UTR 0.12 TCGA-5L-AAT0-01 3 137906363 137906363 C A ARMC8 5'UTR 0.26 TCGA-5L-AAT0-01 3 138340359 138340359 G A FAIM Missense_Mutation p.R64Q 0.22 deleterious(0) probably_damaging(1) TCGA-5L-AAT0-01 3 141161534 141161534 G A ZBTB38 Missense_Mutation p.E102K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT0-01 3 142122720 142122720 G A XRN1 Silent p.I665I 0.04 TCGA-5L-AAT0-01 3 142188940 142188940 C T ATR Missense_Mutation p.E2103K 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-5L-AAT0-01 3 142217479 142217479 C G ATR Missense_Mutation p.E1840Q 0.07 deleterious(0) probably_damaging(1) TCGA-5L-AAT0-01 3 155200208 155200208 G A PLCH1 Missense_Mutation p.L1211F 0.19 tolerated_low_confidence(0.08) benign(0.021) TCGA-5L-AAT0-01 3 15610020 15610020 C T HACL1 Missense_Mutation p.R390K 0.25 tolerated(1) benign(0.001) TCGA-5L-AAT0-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.22 tolerated(0.44) benign(0.085) TCGA-5L-AAT0-01 3 178976769 178976769 C T LRRFIP1P1 3'Flank 0.09 TCGA-5L-AAT0-01 3 185270236 185270236 G A LIPH Silent p.I8I 0.15 TCGA-5L-AAT0-01 3 188478056 188478056 G A LPP Missense_Mutation p.E466K 0.07 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT0-01 3 195505778 195505778 G A MUC4 Missense_Mutation p.L4225F 0.15 probably_damaging(0.946) TCGA-5L-AAT0-01 3 39174539 39174539 C T TTC21A Intron 0.06 TCGA-5L-AAT0-01 3 52257996 52257996 C T TLR9 Missense_Mutation p.M266I 0.10 deleterious(0.02) benign(0.373) TCGA-5L-AAT0-01 3 52941159 52941159 C T SFMBT1 Missense_Mutation p.D753N 0.31 tolerated(0.19) benign(0.159) TCGA-5L-AAT0-01 4 152577418 152577418 G A FAM160A1 Silent p.E862E 0.21 TCGA-5L-AAT0-01 4 66213902 66213902 C G EPHA5 Missense_Mutation p.R843T 0.10 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT0-01 4 75254357 75254357 G A EREG 3'UTR 0.23 TCGA-5L-AAT0-01 4 77116943 77116943 G A SCARB2 Silent p.F64F 0.18 TCGA-5L-AAT0-01 4 77661939 77661939 G A SHROOM3 Silent p.A871A 0.25 TCGA-5L-AAT0-01 4 79841062 79841062 C T PAQR3 3'UTR 0.28 TCGA-5L-AAT0-01 5 102515827 102515827 G A PPIP5K2 Missense_Mutation p.E954K 0.23 deleterious_low_confidence(0) benign(0.037) TCGA-5L-AAT0-01 5 114547535 114547535 C T PGGT1B 3'UTR 0.09 TCGA-5L-AAT0-01 5 135469490 135469490 C G SMAD5 Intron 0.30 TCGA-5L-AAT0-01 5 137781023 137781023 G T REEP2 Missense_Mutation p.R173L 0.27 tolerated(0.13) benign(0.008) TCGA-5L-AAT0-01 5 150647100 150647100 C G GM2A 3'UTR 0.19 TCGA-5L-AAT0-01 5 156770011 156770011 G A FNDC9 Silent p.L178L 0.11 TCGA-5L-AAT0-01 5 159521038 159521038 G A PWWP2A Missense_Mutation p.P207S 0.15 deleterious(0) possibly_damaging(0.877) TCGA-5L-AAT0-01 5 167674323 167674323 G A TENM2 Missense_Mutation p.E2127K 0.16 tolerated(0.05) probably_damaging(0.915) TCGA-5L-AAT0-01 5 170338079 170338079 C T RANBP17 Missense_Mutation p.S234L 0.21 tolerated(0.15) benign(0.008) TCGA-5L-AAT0-01 5 172755414 172755414 G A STC2 5'UTR 0.15 TCGA-5L-AAT0-01 5 36049512 36049512 C T UGT3A2 Missense_Mutation p.E108K 0.16 tolerated(0.12) possibly_damaging(0.593) TCGA-5L-AAT0-01 5 38427198 38427198 C T EGFLAM Missense_Mutation p.S633F 0.10 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT0-01 5 38946615 38946615 G A RICTOR Missense_Mutation p.P1452S 0.21 tolerated(0.25) benign(0.151) TCGA-5L-AAT0-01 5 45259737 45259737 C G HCN1 3'UTR 0.11 TCGA-5L-AAT0-01 5 5186169 5186169 G T ADAMTS16 Missense_Mutation p.M256I 0.26 tolerated(0.13) benign(0.004) TCGA-5L-AAT0-01 5 54466524 54466524 G C CDC20B Intron 0.25 TCGA-5L-AAT0-01 5 54581549 54581549 G C DHX29 Missense_Mutation p.P403A 0.14 tolerated(0.41) benign(0.004) TCGA-5L-AAT0-01 5 56170924 56170924 C T MAP3K1 Silent p.L584L 0.33 TCGA-5L-AAT0-01 5 6656249 6656249 G A SRD5A1 Silent p.R173R 0.06 TCGA-5L-AAT0-01 5 89970003 89970003 G A GPR98 Missense_Mutation p.E1688K 0.38 possibly_damaging(0.899) TCGA-5L-AAT0-01 5 90136543 90136543 C T GPR98 Missense_Mutation p.S5587F 0.13 possibly_damaging(0.831) TCGA-5L-AAT0-01 5 95158214 95158214 G C GLRX Silent p.T51T 0.17 TCGA-5L-AAT0-01 5 98129393 98129393 G A RGMB Missense_Mutation p.R458H 0.13 tolerated(0.14) benign(0.001) TCGA-5L-AAT0-01 6 102516393 102516393 G A GRIK2 3'UTR 0.10 TCGA-5L-AAT0-01 6 111737655 111737655 G A REV3L Silent p.L54L 0.23 TCGA-5L-AAT0-01 6 151757536 151757536 C A RMND1 Intron 0.25 TCGA-5L-AAT0-01 6 158535942 158535942 G A SERAC1 Silent p.I521I 0.18 TCGA-5L-AAT0-01 6 160864680 160864680 C G SLC22A3 Silent p.L472L 0.11 TCGA-5L-AAT0-01 6 161469906 161469906 C T MAP3K4 Missense_Mutation p.S201F 0.22 deleterious(0) probably_damaging(0.934) TCGA-5L-AAT0-01 6 32780867 32780867 C G HLA-DOB 3'UTR 0.07 TCGA-5L-AAT0-01 6 36931132 36931132 C T PI16 Silent p.D338D 0.32 TCGA-5L-AAT0-01 6 44397628 44397628 C T CDC5L Missense_Mutation p.S691L 0.16 deleterious(0) possibly_damaging(0.544) TCGA-5L-AAT0-01 6 71234425 71234425 G A FAM135A Silent p.Q546Q 0.12 TCGA-5L-AAT0-01 6 7248771 7248771 G C RREB1 Missense_Mutation p.C1600S 0.10 deleterious(0) probably_damaging(0.995) TCGA-5L-AAT0-01 6 7904910 7904910 C T TXNDC5 Missense_Mutation p.D104N 0.09 tolerated(0.05) probably_damaging(0.969) TCGA-5L-AAT0-01 7 105172600 105172600 C T RINT1 5'UTR 0.30 TCGA-5L-AAT0-01 7 105172602 105172602 C G RINT1 5'UTR 0.30 TCGA-5L-AAT0-01 7 135611623 135611623 C T AC015987.2 5'UTR 0.10 TCGA-5L-AAT0-01 7 138566255 138566255 T A KIAA1549 Missense_Mutation p.I1370F 0.25 deleterious(0) probably_damaging(0.938) TCGA-5L-AAT0-01 7 138969196 138969196 G A UBN2 Missense_Mutation p.G1182E 0.14 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-5L-AAT0-01 7 149509070 149509070 C T SSPO RNA 0.18 TCGA-5L-AAT0-01 7 157060310 157060310 G A UBE3C Missense_Mutation p.G1038E 0.18 deleterious(0) possibly_damaging(0.688) TCGA-5L-AAT0-01 7 157931072 157931072 C T PTPRN2 Missense_Mutation p.R349Q 0.26 tolerated(0.91) benign(0.001) TCGA-5L-AAT0-01 7 36934481 36934481 C G ELMO1 Missense_Mutation p.D527H 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-5L-AAT0-01 7 44714063 44714063 A C OGDH Missense_Mutation p.E281A 0.20 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT0-01 7 55750514 55750514 G A RNU6-389P 5'Flank 0.18 TCGA-5L-AAT0-01 7 56132054 56132054 G A SUMF2 Missense_Mutation p.G36D 0.19 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-5L-AAT0-01 7 5920568 5920568 C T OCM Silent p.L16L 0.30 TCGA-5L-AAT0-01 7 64350134 64350134 G A RP11-797H7.5 RNA 0.31 TCGA-5L-AAT0-01 7 72865191 72865191 A C BAZ1B Missense_Mutation p.V1189G 0.17 deleterious(0) probably_damaging(0.969) TCGA-5L-AAT0-01 7 72892357 72892357 G C BAZ1B Silent p.L478L 0.21 TCGA-5L-AAT0-01 7 73183650 73183650 C G CLDN3 3'UTR 0.23 TCGA-5L-AAT0-01 7 819769 819769 G A HEATR2 Missense_Mutation p.D807N 0.24 tolerated(0.24) benign(0.028) TCGA-5L-AAT0-01 7 98625345 98625345 G C SMURF1 3'UTR 0.18 TCGA-5L-AAT0-01 8 110488829 110488829 G A PKHD1L1 Silent p.L2950L 0.24 TCGA-5L-AAT0-01 8 116426505 116426507 TCA - TRPS1 In_Frame_Del p.L1210_N1211delinsY 0.22 TCGA-5L-AAT0-01 8 12879577 12879577 C T KIAA1456 3'UTR 0.18 TCGA-5L-AAT0-01 8 133141571 133141571 G C KCNQ3 Missense_Mutation p.L853V 0.22 tolerated(0.13) possibly_damaging(0.559) TCGA-5L-AAT0-01 8 141745357 141745357 G A PTK2 Nonsense_Mutation p.Q675* 0.22 TCGA-5L-AAT0-01 8 143851204 143851204 G A LYNX1 Intron 0.10 TCGA-5L-AAT0-01 8 145163767 145163767 C T KIAA1875 Silent p.F266F 0.26 TCGA-5L-AAT0-01 8 1497661 1497661 G A DLGAP2 Missense_Mutation p.D268N 0.29 deleterious(0) probably_damaging(1) TCGA-5L-AAT0-01 8 21856308 21856308 C G XPO7 Missense_Mutation p.I796M 0.09 deleterious(0) possibly_damaging(0.897) TCGA-5L-AAT0-01 8 53535457 53535457 C T RB1CC1 3'UTR 0.09 TCGA-5L-AAT0-01 8 55539420 55539420 C G RP1 Missense_Mutation p.S993C 0.29 deleterious(0.02) probably_damaging(0.91) TCGA-5L-AAT0-01 8 99963089 99963089 G A OSR2 Intron 0.12 TCGA-5L-AAT0-01 9 114090069 114090069 G C OR2K2 Missense_Mutation p.I215M 0.33 deleterious(0) possibly_damaging(0.873) TCGA-5L-AAT0-01 9 125865426 125865426 G A RABGAP1 Silent p.T1048T 0.14 TCGA-5L-AAT0-01 9 126770096 126770096 C G LHX2 5'Flank 0.21 TCGA-5L-AAT0-01 9 132681480 132681480 C T FNBP1 Intron 0.14 TCGA-5L-AAT0-01 9 138590316 138590316 C T SOHLH1 Silent p.R68R 0.09 TCGA-5L-AAT0-01 9 140772545 140772545 C T CACNA1B Missense_Mutation p.R54W 0.21 deleterious(0) benign(0.428) TCGA-5L-AAT0-01 9 14618997 14618997 C T ZDHHC21 Silent p.L255L 0.21 TCGA-5L-AAT0-01 9 14842616 14842616 C T FREM1 Missense_Mutation p.G479E 0.09 deleterious(0.04) possibly_damaging(0.762) TCGA-5L-AAT0-01 9 35724609 35724609 C G TLN1 Missense_Mutation p.K157N 0.10 deleterious(0) possibly_damaging(0.881) TCGA-5L-AAT0-01 9 4663399 4663399 C G PPAPDC2 3'UTR 0.30 TCGA-5L-AAT0-01 9 72758683 72758683 G A MAMDC2 Missense_Mutation p.R451K 0.21 tolerated(0.35) benign(0.129) TCGA-5L-AAT0-01 9 75531947 75531947 C G ALDH1A1 Missense_Mutation p.R308S 0.12 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT0-01 X 118752726 118752726 T G SEPT6 Nonstop_Mutation p.*435Sext*22 0.09 TCGA-5L-AAT0-01 X 12940021 12940021 G T TLR8 Missense_Mutation p.W954C 0.20 tolerated(0.09) probably_damaging(0.986) TCGA-5L-AAT0-01 X 131214080 131214080 C A FRMD7 Missense_Mutation p.R335L 0.18 deleterious(0) benign(0.042) TCGA-5L-AAT0-01 X 148626973 148626973 G A CXorf40A 5'UTR 0.24 TCGA-5L-AAT0-01 X 152160231 152160231 T A PNMA5 5'UTR 0.29 TCGA-5L-AAT0-01 X 152615871 152615871 G C ZNF275 3'UTR 0.10 TCGA-5L-AAT0-01 X 153127583 153127583 C T L1CAM 3'UTR 0.15 TCGA-5L-AAT0-01 X 153206953 153206953 G A RENBP Missense_Mutation p.A308V 0.17 tolerated(0.97) benign(0.013) TCGA-5L-AAT0-01 X 153539358 153539358 G A TKTL1 Silent p.Q174Q 0.23 TCGA-5L-AAT0-01 X 153579318 153579318 G A FLNA Missense_Mutation p.S2372L 0.15 deleterious(0.01) benign(0.37) TCGA-5L-AAT0-01 X 3228273 3228273 G A MXRA5 Silent p.L2657L 0.29 TCGA-5L-AAT0-01 X 41022048 41022048 G A USP9X Missense_Mutation p.E635K 0.24 tolerated(0.3) benign(0.01) TCGA-5L-AAT0-01 X 69723760 69723760 G A DLG3 3'UTR 0.25 TCGA-5L-AAT0-01 X 99664288 99664288 G A PCDH19 5'UTR 0.19 TCGA-5L-AAT1-01 10 100481443 100481443 C T HPSE2 Silent p.P309P 0.21 TCGA-5L-AAT1-01 10 101648624 101648624 C T DNMBP Silent p.E1081E 0.14 TCGA-5L-AAT1-01 10 102120536 102120536 C G SCD Missense_Mutation p.S309C 0.11 deleterious(0) probably_damaging(0.979) TCGA-5L-AAT1-01 10 102724883 102724883 C T RP11-108L7.14 5'Flank 0.17 TCGA-5L-AAT1-01 10 102987528 102987528 G C LBX1 Missense_Mutation p.I115M 0.17 deleterious(0.05) possibly_damaging(0.491) TCGA-5L-AAT1-01 10 103542091 103542091 G C NPM3 Missense_Mutation p.F114L 0.23 deleterious(0.02) probably_damaging(0.935) TCGA-5L-AAT1-01 10 103906728 103906728 C T PPRC1 Nonsense_Mutation p.Q1327* 0.17 TCGA-5L-AAT1-01 10 103990249 103990249 G T PITX3 3'UTR 0.20 TCGA-5L-AAT1-01 10 103990428 103990428 G C PITX3 Missense_Mutation p.S251C 0.21 deleterious(0.05) benign(0.069) TCGA-5L-AAT1-01 10 103990629 103990629 G A PITX3 Missense_Mutation p.S184L 0.12 deleterious(0) possibly_damaging(0.602) TCGA-5L-AAT1-01 10 103990781 103990781 G C PITX3 Missense_Mutation p.F133L 0.09 tolerated(0.08) possibly_damaging(0.483) TCGA-5L-AAT1-01 10 104163721 104163721 C T PSD Missense_Mutation p.E908K 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-5L-AAT1-01 10 104390032 104390032 C T SUFU 3'UTR 0.11 TCGA-5L-AAT1-01 10 105362283 105362283 C T SH3PXD2A Missense_Mutation p.E870K 0.12 tolerated(0.57) benign(0.087) TCGA-5L-AAT1-01 10 105845496 105845496 G C COL17A1 5'UTR 0.16 TCGA-5L-AAT1-01 10 105882126 105882126 C G SFR1 Intron 0.20 TCGA-5L-AAT1-01 10 108439454 108439454 C T SORCS1 Silent p.E533E 0.15 TCGA-5L-AAT1-01 10 111967749 111967749 G C MXI1 Silent p.S61S 0.17 TCGA-5L-AAT1-01 10 112581188 112581188 G C RBM20 Missense_Mutation p.Q937H 0.15 deleterious(0.04) possibly_damaging(0.681) TCGA-5L-AAT1-01 10 112839233 112839233 C G ADRA2A 3'UTR 0.11 TCGA-5L-AAT1-01 10 115980336 115980336 C G TDRD1 Missense_Mutation p.S835C 0.19 deleterious(0) benign(0.115) TCGA-5L-AAT1-01 10 11912840 11912840 C T PROSER2 3'UTR 0.18 TCGA-5L-AAT1-01 10 119809077 119809077 G C RAB11FIP2 5'Flank 0.15 TCGA-5L-AAT1-01 10 120445618 120445618 G A CACUL1 3'UTR 0.21 TCGA-5L-AAT1-01 10 12070757 12070757 C T UPF2 Missense_Mutation p.E378K 0.15 deleterious(0.01) possibly_damaging(0.867) TCGA-5L-AAT1-01 10 12077285 12077285 C T UPF2 Silent p.K46K 0.26 TCGA-5L-AAT1-01 10 120792968 120792968 C T NANOS1 3'UTR 0.14 TCGA-5L-AAT1-01 10 120792971 120792971 C T NANOS1 3'UTR 0.13 TCGA-5L-AAT1-01 10 120793550 120793550 C G NANOS1 3'UTR 0.24 TCGA-5L-AAT1-01 10 120919252 120919252 G A SFXN4 Silent p.F116F 0.11 TCGA-5L-AAT1-01 10 12238095 12238095 C T NUDT5 5'UTR 0.06 TCGA-5L-AAT1-01 10 127555696 127555696 C T DHX32 Silent p.V113V 0.31 TCGA-5L-AAT1-01 10 129861401 129861401 C T PTPRE Missense_Mutation p.S227F 0.19 deleterious(0) probably_damaging(0.96) TCGA-5L-AAT1-01 10 13360879 13360879 G C SEPHS1 3'UTR 0.25 TCGA-5L-AAT1-01 10 133966474 133966474 G A JAKMIP3 Missense_Mutation p.E672K 0.27 deleterious(0) possibly_damaging(0.686) TCGA-5L-AAT1-01 10 134180357 134180357 G C LRRC27 Intron 0.13 TCGA-5L-AAT1-01 10 134663835 134663835 G A TTC40 Silent p.L1955L 0.19 TCGA-5L-AAT1-01 10 135012981 135012981 G A KNDC1 Silent p.L926L 0.07 TCGA-5L-AAT1-01 10 135281458 135281458 G A SPRN Intron 0.19 TCGA-5L-AAT1-01 10 13541822 13541822 G A BEND7 Missense_Mutation p.S83F 0.23 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-5L-AAT1-01 10 15253817 15253817 C T FAM171A1 3'UTR 0.26 TCGA-5L-AAT1-01 10 15254222 15254222 C T FAM171A1 3'UTR 0.13 TCGA-5L-AAT1-01 10 15573108 15573108 C G ITGA8 Missense_Mutation p.E975Q 0.21 tolerated(0.38) benign(0.005) TCGA-5L-AAT1-01 10 16554808 16554808 C T PTER 3'UTR 0.12 TCGA-5L-AAT1-01 10 17088071 17088071 G A CUBN Missense_Mutation p.P1118S 0.16 tolerated(0.09) probably_damaging(0.999) TCGA-5L-AAT1-01 10 21072503 21072503 C G NEBL 3'UTR 0.18 TCGA-5L-AAT1-01 10 25887617 25887617 C T GPR158 Missense_Mutation p.S1021L 0.25 tolerated(0.09) benign(0.049) TCGA-5L-AAT1-01 10 26357768 26357768 C T MYO3A Silent p.L375L 0.10 TCGA-5L-AAT1-01 10 27826984 27826984 C T RAB18 3'UTR 0.19 TCGA-5L-AAT1-01 10 29752503 29752503 C T SVIL Silent p.E2065E 0.26 TCGA-5L-AAT1-01 10 30316783 30316783 G A KIAA1462 Missense_Mutation p.S765L 0.23 deleterious(0.04) possibly_damaging(0.823) TCGA-5L-AAT1-01 10 322860 322860 C G DIP2C 3'UTR 0.21 TCGA-5L-AAT1-01 10 32582077 32582077 C A EPC1 Nonsense_Mutation p.E169* 0.16 TCGA-5L-AAT1-01 10 34671625 34671625 C G PARD3 Missense_Mutation p.Q414H 0.21 tolerated(0.13) benign(0.001) TCGA-5L-AAT1-01 10 34671658 34671658 C T PARD3 Silent p.Q403Q 0.18 TCGA-5L-AAT1-01 10 37520458 37520458 C A ANKRD30A 3'UTR 0.17 TCGA-5L-AAT1-01 10 43292292 43292292 G C BMS1 Missense_Mutation p.E534Q 0.08 tolerated(0.11) benign(0.362) TCGA-5L-AAT1-01 10 45478075 45478075 C T RASSF4 Missense_Mutation p.S82F 0.14 tolerated(0.18) benign(0.11) TCGA-5L-AAT1-01 10 48428712 48428712 C T GDF10 Missense_Mutation p.E392K 0.17 deleterious(0) possibly_damaging(0.569) TCGA-5L-AAT1-01 10 4889721 4889721 G C AKR1E2 Nonstop_Mutation p.*321Sext*50 0.18 TCGA-5L-AAT1-01 10 5043819 5043819 G A AKR1C2 Missense_Mutation p.H47Y 0.23 deleterious(0.02) benign(0.002) TCGA-5L-AAT1-01 10 5784363 5784363 C A FAM208B Missense_Mutation p.F877L 0.06 tolerated(0.26) benign(0.057) TCGA-5L-AAT1-01 10 63816911 63816911 G A ARID5B Silent p.P294P 0.17 TCGA-5L-AAT1-01 10 63957336 63957336 C T RTKN2 3'UTR 0.20 TCGA-5L-AAT1-01 10 68979403 68979403 G A CTNNA3 Nonsense_Mutation p.Q269* 0.23 TCGA-5L-AAT1-01 10 70412255 70412255 C G TET1 Intron 0.16 TCGA-5L-AAT1-01 10 70992805 70992805 C T HKDC1 Silent p.F137F 0.08 TCGA-5L-AAT1-01 10 71911354 71911354 C A SAR1A 3'UTR 0.18 TCGA-5L-AAT1-01 10 75531494 75531494 C A SEC24C 3'UTR 0.16 TCGA-5L-AAT1-01 10 75531849 75531849 C G SEC24C 3'UTR 0.19 TCGA-5L-AAT1-01 10 7601743 7601743 G A ITIH5 3'UTR 0.18 TCGA-5L-AAT1-01 10 76788275 76788275 G C KAT6B Missense_Mutation p.L1231F 0.14 possibly_damaging(0.866) TCGA-5L-AAT1-01 10 8106058 8106058 T A GATA3 Missense_Mutation p.M294K 0.26 deleterious(0) possibly_damaging(0.583) TCGA-5L-AAT1-01 10 82111670 82111670 A G DYDC1 Missense_Mutation p.L79P 0.16 deleterious(0) possibly_damaging(0.907) TCGA-5L-AAT1-01 10 82180397 82180397 G A FAM213A Silent p.E58E 0.11 TCGA-5L-AAT1-01 10 85958785 85958785 C T CDHR1 Intron 0.14 TCGA-5L-AAT1-01 10 88703713 88703713 G T MMRN2 Silent p.V276V 0.10 TCGA-5L-AAT1-01 10 90574871 90574871 G C LIPM Missense_Mutation p.E201Q 0.20 tolerated(0.21) benign(0.124) TCGA-5L-AAT1-01 10 91098795 91098795 C G IFIT3 Nonsense_Mutation p.S128* 0.15 TCGA-5L-AAT1-01 10 94234708 94234708 G A IDE Missense_Mutation p.S669F 0.18 deleterious(0.01) benign(0.066) TCGA-5L-AAT1-01 10 96005928 96005928 C G PLCE1 Silent p.L882L 0.19 TCGA-5L-AAT1-01 10 96058325 96058325 G A PLCE1 Missense_Mutation p.R1786K 0.16 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 10 96748790 96748790 G A CYP2C9 3'UTR 0.18 TCGA-5L-AAT1-01 10 98084085 98084085 C T DNTT Silent p.F271F 0.19 TCGA-5L-AAT1-01 10 98303726 98303726 G C TM9SF3 Intron 0.16 TCGA-5L-AAT1-01 10 99439560 99439560 C T AVPI1 Missense_Mutation p.E35K 0.20 tolerated(0.2) possibly_damaging(0.675) TCGA-5L-AAT1-01 10 99770935 99770935 C T CRTAC1 Missense_Mutation p.D62N 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-5L-AAT1-01 11 100061932 100061932 G A CNTN5 Missense_Mutation p.R552Q 0.20 tolerated(0.29) benign(0.012) TCGA-5L-AAT1-01 11 100920784 100920784 C T PGR Silent p.R788R 0.23 TCGA-5L-AAT1-01 11 102195650 102195650 C G BIRC3 Missense_Mutation p.S137C 0.23 deleterious(0.01) benign(0.013) TCGA-5L-AAT1-01 11 102233670 102233670 G A BIRC2 Missense_Mutation p.E347K 0.15 tolerated(0.08) benign(0.002) TCGA-5L-AAT1-01 11 1031245 1031245 C T MUC6 Silent p.R166R 0.20 TCGA-5L-AAT1-01 11 10327559 10327559 C T ADM Silent p.T54T 0.18 TCGA-5L-AAT1-01 11 103325962 103325962 G C DYNC2H1 Missense_Mutation p.D4176H 0.18 probably_damaging(0.988) TCGA-5L-AAT1-01 11 104868179 104868179 G A CASP5 Silent p.F392F 0.28 TCGA-5L-AAT1-01 11 111941378 111941378 G T PIH1D2 Missense_Mutation p.H199N 0.14 tolerated(0.58) benign(0.002) TCGA-5L-AAT1-01 11 113085116 113085116 G C NCAM1 Missense_Mutation p.E373D 0.23 tolerated(0.14) benign(0.099) TCGA-5L-AAT1-01 11 113147593 113147593 G T NCAM1 3'Flank 0.16 TCGA-5L-AAT1-01 11 113672310 113672310 G C USP28 Missense_Mutation p.P985A 0.17 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 11 117064595 117064595 C T SIDT2 Silent p.L746L 0.11 TCGA-5L-AAT1-01 11 117158071 117158071 G C BACE1 3'UTR 0.18 TCGA-5L-AAT1-01 11 117314668 117314668 C T DSCAML1 Missense_Mutation p.A1326T 0.18 tolerated(0.26) possibly_damaging(0.637) TCGA-5L-AAT1-01 11 118944029 118944029 G A VPS11 Missense_Mutation p.E335K 0.19 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 11 119535122 119535122 C G PVRL1 3'UTR 0.16 TCGA-5L-AAT1-01 11 120099984 120099984 C G OAF 3'UTR 0.19 TCGA-5L-AAT1-01 11 124135413 124135413 G A OR8G5 Missense_Mutation p.E231K 0.17 deleterious(0.02) benign(0.254) TCGA-5L-AAT1-01 11 124189922 124189922 G C OR8D2 Missense_Mutation p.P58A 0.19 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT1-01 11 124756364 124756364 G T ROBO4 Missense_Mutation p.F930L 0.16 tolerated(0.08) benign(0.153) TCGA-5L-AAT1-01 11 1269102 1269102 C T MUC5B Silent p.F3664F 0.24 TCGA-5L-AAT1-01 11 128774413 128774413 G C C11orf45 Missense_Mutation p.P17A 0.22 tolerated_low_confidence(0.38) benign(0) TCGA-5L-AAT1-01 11 128807324 128807324 G A TP53AIP1 Intron 0.23 TCGA-5L-AAT1-01 11 133791141 133791141 T A IGSF9B Missense_Mutation p.I827F 0.19 deleterious(0) possibly_damaging(0.837) TCGA-5L-AAT1-01 11 133805645 133805645 C G IGSF9B Silent p.L278L 0.09 TCGA-5L-AAT1-01 11 17545026 17545026 C G USH1C Splice_Site p.X254_splice 0.26 TCGA-5L-AAT1-01 11 19905886 19905886 C T NAV2 Silent p.L273L 0.13 TCGA-5L-AAT1-01 11 20530088 20530088 G A PRMT3 3'UTR 0.20 TCGA-5L-AAT1-01 11 20948956 20948956 G A NELL1 Missense_Mutation p.D288N 0.24 deleterious(0.02) possibly_damaging(0.898) TCGA-5L-AAT1-01 11 213386 213386 G A RIC8A Missense_Mutation p.M487I 0.14 tolerated(0.09) benign(0.089) TCGA-5L-AAT1-01 11 213397 213397 C A RIC8A Missense_Mutation p.T491N 0.15 tolerated(1) benign(0.001) TCGA-5L-AAT1-01 11 213405 213405 G C RIC8A Missense_Mutation p.D494H 0.16 deleterious(0) probably_damaging(0.97) TCGA-5L-AAT1-01 11 21596517 21596517 G A NELL1 Splice_Site p.X795_splice 0.25 TCGA-5L-AAT1-01 11 22232842 22232842 C T ANO5 Silent p.L40L 0.11 TCGA-5L-AAT1-01 11 2339105 2339105 G A TSPAN32 Missense_Mutation p.R305K 0.19 tolerated_low_confidence(0.36) benign(0.032) TCGA-5L-AAT1-01 11 2424132 2424132 C G TSSC4 Missense_Mutation p.S90C 0.21 deleterious(0) probably_damaging(0.961) TCGA-5L-AAT1-01 11 2424466 2424466 C G TSSC4 Missense_Mutation p.F201L 0.18 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT1-01 11 314144 314144 C T IFITM1 5'UTR 0.12 TCGA-5L-AAT1-01 11 32610617 32610617 G A EIF3M Missense_Mutation p.C125Y 0.22 tolerated(1) benign(0.008) TCGA-5L-AAT1-01 11 35547141 35547141 G A PAMR1 5'UTR 0.18 TCGA-5L-AAT1-01 11 36595304 36595304 C G RAG1 Silent p.S150S 0.24 TCGA-5L-AAT1-01 11 44266739 44266739 G T EXT2 3'UTR 0.12 TCGA-5L-AAT1-01 11 44266818 44266818 G T EXT2 3'UTR 0.11 TCGA-5L-AAT1-01 11 44297088 44297088 G A ALX4 Missense_Mutation p.S196L 0.25 tolerated(0.08) benign(0.002) TCGA-5L-AAT1-01 11 45274089 45274089 C T SYT13 Silent p.L243L 0.23 TCGA-5L-AAT1-01 11 4615969 4615969 C G OR52I1 Nonsense_Mutation p.S234* 0.23 TCGA-5L-AAT1-01 11 47199963 47199963 G C PACSIN3 Silent p.L371L 0.12 TCGA-5L-AAT1-01 11 47290208 47290208 C G NR1H3 Silent p.L435L 0.08 TCGA-5L-AAT1-01 11 47290229 47290229 C G NR1H3 Missense_Mutation p.I442M 0.08 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 11 47599450 47599450 G T KBTBD4 Silent p.I50I 0.15 TCGA-5L-AAT1-01 11 47664158 47664158 C A MTCH2 5'UTR 0.36 TCGA-5L-AAT1-01 11 48185929 48185929 C T PTPRJ Intron 0.18 TCGA-5L-AAT1-01 11 48238785 48238785 C A OR4B1 Missense_Mutation p.L142M 0.22 tolerated(0.18) possibly_damaging(0.802) TCGA-5L-AAT1-01 11 499165 499165 G A RNH1 Missense_Mutation p.S155L 0.16 deleterious(0) benign(0.368) TCGA-5L-AAT1-01 11 55065358 55065358 C T TRIM51HP RNA 0.22 TCGA-5L-AAT1-01 11 55872944 55872944 C T OR8H2 Silent p.L142L 0.16 TCGA-5L-AAT1-01 11 5618018 5618018 G A TRIM6-TRIM34 5'UTR 0.16 TCGA-5L-AAT1-01 11 56949233 56949233 G C LRRC55 5'UTR 0.07 TCGA-5L-AAT1-01 11 57585661 57585661 C T CTNND1 3'UTR 0.13 TCGA-5L-AAT1-01 11 59568451 59568451 G T STX3 3'UTR 0.27 TCGA-5L-AAT1-01 11 59814448 59814448 G A OOSP2 Missense_Mutation p.E127K 0.18 tolerated(0.19) benign(0.297) TCGA-5L-AAT1-01 11 60535086 60535086 C G MS4A15 Missense_Mutation p.I102M 0.14 tolerated(0.45) benign(0.009) TCGA-5L-AAT1-01 11 61547311 61547311 C T MYRF Intron 0.13 TCGA-5L-AAT1-01 11 61917677 61917677 G A INCENP Missense_Mutation p.R847Q 0.16 tolerated(0.15) possibly_damaging(0.452) TCGA-5L-AAT1-01 11 62289021 62289021 C G AHNAK Missense_Mutation p.E4290Q 0.16 possibly_damaging(0.771) TCGA-5L-AAT1-01 11 62289460 62289460 C T AHNAK Missense_Mutation p.M4143I 0.20 benign(0.006) TCGA-5L-AAT1-01 11 62438820 62438820 C T C11orf48 5'UTR 0.22 TCGA-5L-AAT1-01 11 62561744 62561744 G A NXF1 Silent p.L582L 0.23 TCGA-5L-AAT1-01 11 62620818 62620818 C G SLC3A2 5'Flank 0.16 TCGA-5L-AAT1-01 11 64023211 64023211 G C PLCB3 Missense_Mutation p.D206H 0.11 deleterious(0) possibly_damaging(0.772) TCGA-5L-AAT1-01 11 64671126 64671126 G A ATG2A Silent p.I1157I 0.04 TCGA-5L-AAT1-01 11 64675324 64675324 G C ATG2A Missense_Mutation p.F801L 0.25 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 11 65266545 65266545 C A MALAT1 RNA 0.19 TCGA-5L-AAT1-01 11 65667803 65667803 C G FOSL1 Missense_Mutation p.R3P 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-5L-AAT1-01 11 66101097 66101097 G C RIN1 Missense_Mutation p.L542V 0.21 tolerated(0.46) probably_damaging(0.999) TCGA-5L-AAT1-01 11 66206297 66206297 G A MRPL11 5'UTR 0.20 TCGA-5L-AAT1-01 11 66206312 66206312 G C MRPL11 5'UTR 0.22 TCGA-5L-AAT1-01 11 6653661 6653661 C T DCHS1 Missense_Mutation p.D1028N 0.18 tolerated(0.17) possibly_damaging(0.752) TCGA-5L-AAT1-01 11 6662517 6662517 C T DCHS1 Missense_Mutation p.E110K 0.15 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 11 67072421 67072421 G A SSH3 Silent p.Q94Q 0.09 TCGA-5L-AAT1-01 11 67401796 67401796 C T TBX10 Missense_Mutation p.G138D 0.13 deleterious(0) probably_damaging(0.986) TCGA-5L-AAT1-01 11 67770598 67770598 C T UNC93B1 Missense_Mutation p.E96K 0.11 deleterious(0) probably_damaging(0.96) TCGA-5L-AAT1-01 11 679729 679729 G A DEAF1 Missense_Mutation p.S362L 0.14 deleterious(0) probably_damaging(0.989) TCGA-5L-AAT1-01 11 6807181 6807181 C G OR2AG1 Missense_Mutation p.L305V 0.11 tolerated(0.08) benign(0.179) TCGA-5L-AAT1-01 11 68517996 68517996 C T MTL5 Missense_Mutation p.E45K 0.20 deleterious_low_confidence(0.01) benign(0.23) TCGA-5L-AAT1-01 11 7111454 7111454 C A RBMXL2 Nonsense_Mutation p.S368* 0.17 TCGA-5L-AAT1-01 11 72005418 72005418 G C CLPB Missense_Mutation p.S574W 0.18 deleterious(0) probably_damaging(0.996) TCGA-5L-AAT1-01 11 73814635 73814635 G A C2CD3 Silent p.F707F 0.21 TCGA-5L-AAT1-01 11 76063824 76063824 C T PRKRIR Missense_Mutation p.E124K 0.29 tolerated(0.3) possibly_damaging(0.489) TCGA-5L-AAT1-01 11 76372027 76372027 G C LRRC32 Missense_Mutation p.L204V 0.16 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 11 83169256 83169256 C G DLG2 3'UTR 0.22 TCGA-5L-AAT1-01 11 842411 842411 C T POLR2L Intron 0.20 TCGA-5L-AAT1-01 11 842418 842418 C T POLR2L Missense_Mutation p.E31K 0.21 tolerated(0.07) benign(0.03) TCGA-5L-AAT1-01 11 85963281 85963281 G C EED Missense_Mutation p.R120T 0.16 deleterious(0.01) possibly_damaging(0.898) TCGA-5L-AAT1-01 11 86661335 86661335 C T FZD4 3'UTR 0.17 TCGA-5L-AAT1-01 11 87020594 87020594 C T TMEM135 Silent p.L272L 0.20 TCGA-5L-AAT1-01 11 8941095 8941095 C G AKIP1 3'UTR 0.16 TCGA-5L-AAT1-01 11 89944398 89944398 C T CHORDC1 Missense_Mutation p.E140K 0.12 tolerated(0.2) benign(0.197) TCGA-5L-AAT1-01 11 92577567 92577567 C T FAT3 Silent p.L3678L 0.20 TCGA-5L-AAT1-01 11 96123810 96123810 C T JRKL 5'UTR 0.26 TCGA-5L-AAT1-01 11 970231 970231 C G AP2A2 Missense_Mutation p.L67V 0.13 deleterious(0.01) benign(0.151) TCGA-5L-AAT1-01 12 10133246 10133246 G A CLEC12A Missense_Mutation p.D159N 0.15 tolerated(0.43) benign(0.026) TCGA-5L-AAT1-01 12 102406875 102406875 C T CCDC53 3'UTR 0.23 TCGA-5L-AAT1-01 12 107236580 107236580 G A RIC8B Silent p.E350E 0.11 TCGA-5L-AAT1-01 12 108128084 108128084 G C PRDM4 Nonsense_Mutation p.S770* 0.25 TCGA-5L-AAT1-01 12 109629557 109629557 G A ACACB Missense_Mutation p.E762K 0.05 tolerated(0.41) benign(0.011) TCGA-5L-AAT1-01 12 109671784 109671784 C G ACACB Missense_Mutation p.I1427M 0.08 deleterious(0.02) possibly_damaging(0.649) TCGA-5L-AAT1-01 12 110341927 110341927 C T TCHP Missense_Mutation p.S125L 0.29 deleterious(0.05) benign(0.014) TCGA-5L-AAT1-01 12 110466397 110466397 G A ANKRD13A Silent p.L342L 0.19 TCGA-5L-AAT1-01 12 111948299 111948299 G A ATXN2 Missense_Mutation p.S709F 0.17 probably_damaging(0.986) TCGA-5L-AAT1-01 12 11199627 11199627 G C TAS2R63P 3'Flank 0.08 TCGA-5L-AAT1-01 12 112121066 112121066 G A BRAP Missense_Mutation p.S43L 0.16 tolerated(0.31) benign(0.001) TCGA-5L-AAT1-01 12 112306610 112306610 G T MAPKAPK5 Missense_Mutation p.R113I 0.12 deleterious(0) possibly_damaging(0.837) TCGA-5L-AAT1-01 12 112846433 112846433 C G RPL6 Missense_Mutation p.D10H 0.15 tolerated(0.05) benign(0.319) TCGA-5L-AAT1-01 12 113357474 113357474 C G OAS1 Missense_Mutation p.I407M 0.13 unknown(0) TCGA-5L-AAT1-01 12 113818613 113818613 C A PLBD2 Missense_Mutation p.S308Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 12 115118862 115118863 - C TBX3 Frame_Shift_Ins p.D160Gfs*5 0.12 TCGA-5L-AAT1-01 12 118590035 118590035 C G TAOK3 Missense_Mutation p.Q844H 0.12 deleterious(0.02) benign(0.019) TCGA-5L-AAT1-01 12 119592137 119592137 G A SRRM4 Missense_Mutation p.R494K 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.87) TCGA-5L-AAT1-01 12 122260554 122260554 G A SETD1B Missense_Mutation p.E1314K 0.17 unknown(0) TCGA-5L-AAT1-01 12 12232339 12232339 C A BCL2L14 Missense_Mutation p.H34N 0.15 deleterious(0.02) probably_damaging(0.924) TCGA-5L-AAT1-01 12 123479449 123479449 G A PITPNM2 Missense_Mutation p.A711V 0.19 deleterious(0.04) benign(0.031) TCGA-5L-AAT1-01 12 124130023 124130023 G C GTF2H3 Missense_Mutation p.D39H 0.20 deleterious(0) probably_damaging(0.951) TCGA-5L-AAT1-01 12 124416542 124416542 C G DNAH10 Missense_Mutation p.L4277V 0.17 probably_damaging(0.988) TCGA-5L-AAT1-01 12 124911175 124911175 G A NCOR2 Missense_Mutation p.R441W 0.12 unknown(0) TCGA-5L-AAT1-01 12 129278891 129278891 G A SLC15A4 Silent p.N528N 0.14 TCGA-5L-AAT1-01 12 130916688 130916688 G A RIMBP2 Intron 0.17 TCGA-5L-AAT1-01 12 131275990 131275990 G A STX2 3'UTR 0.28 TCGA-5L-AAT1-01 12 132863000 132863000 G A GALNT9 Silent p.I85I 0.14 TCGA-5L-AAT1-01 12 2040041 2040041 C T LINC00940 RNA 0.27 TCGA-5L-AAT1-01 12 2061737 2061737 G A DCP1B Nonsense_Mutation p.Q457* 0.21 TCGA-5L-AAT1-01 12 20766527 20766527 C T PDE3A Nonsense_Mutation p.Q388* 0.11 TCGA-5L-AAT1-01 12 21712044 21712044 C G GYS2 Missense_Mutation p.R430T 0.18 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 12 22676465 22676465 G C C2CD5 Missense_Mutation p.S232C 0.18 tolerated(0.05) benign(0.36) TCGA-5L-AAT1-01 12 25679713 25679713 G A IFLTD1 Missense_Mutation p.S223F 0.22 deleterious(0) possibly_damaging(0.884) TCGA-5L-AAT1-01 12 26868316 26868316 C G ITPR2 Missense_Mutation p.E257D 0.25 tolerated(0.08) benign(0.063) TCGA-5L-AAT1-01 12 3046806 3046806 G A TULP3 Missense_Mutation p.V312I 0.14 tolerated(0.07) benign(0.011) TCGA-5L-AAT1-01 12 30792516 30792516 G A IPO8 Missense_Mutation p.H808Y 0.12 tolerated(0.08) benign(0.017) TCGA-5L-AAT1-01 12 31478351 31478351 G A AC024940.1 3'UTR 0.26 TCGA-5L-AAT1-01 12 31652582 31652582 C G DENND5B Intron 0.16 TCGA-5L-AAT1-01 12 39705329 39705329 G C KIF21A Nonsense_Mutation p.S1329* 0.16 TCGA-5L-AAT1-01 12 39761689 39761689 G A KIF21A Missense_Mutation p.S199L 0.16 tolerated(0.08) benign(0.005) TCGA-5L-AAT1-01 12 40012886 40012886 G A ABCD2 Missense_Mutation p.R178C 0.08 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 12 41831699 41831699 C T PDZRN4 Intron 0.22 TCGA-5L-AAT1-01 12 48537551 48537551 C T PFKM Silent p.L683L 0.19 TCGA-5L-AAT1-01 12 49065642 49065642 G C KANSL2 Missense_Mutation p.L217V 0.14 tolerated(0.44) benign(0.223) TCGA-5L-AAT1-01 12 49220826 49220826 G A CACNB3 Missense_Mutation p.E354K 0.19 deleterious(0) probably_damaging(0.961) TCGA-5L-AAT1-01 12 49415640 49415640 G C KMT2D Missense_Mutation p.Q5513E 0.11 unknown(0) TCGA-5L-AAT1-01 12 49428392 49428392 C G KMT2D Missense_Mutation p.Q3471H 0.18 probably_damaging(0.976) TCGA-5L-AAT1-01 12 50488263 50488263 G A SMARCD1 Missense_Mutation p.D393N 0.18 deleterious(0) probably_damaging(0.924) TCGA-5L-AAT1-01 12 50745462 50745462 G A FAM186A Missense_Mutation p.S1718L 0.20 tolerated(0.31) benign(0.002) TCGA-5L-AAT1-01 12 50898916 50898916 G A DIP2B 5'UTR 0.22 TCGA-5L-AAT1-01 12 52285105 52285105 G C ANKRD33 3'UTR 0.22 TCGA-5L-AAT1-01 12 52844239 52844239 C G KRT6B Missense_Mutation p.D236H 0.09 deleterious(0) probably_damaging(0.991) TCGA-5L-AAT1-01 12 52865506 52865506 C T KRT6C Missense_Mutation p.E256K 0.11 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 12 54891559 54891559 C G NCKAP1L 5'UTR 0.16 TCGA-5L-AAT1-01 12 55945013 55945013 G A OR6C4 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-5L-AAT1-01 12 56429787 56429787 G T IKZF4 3'UTR 0.19 TCGA-5L-AAT1-01 12 56737238 56737238 C T STAT2 Missense_Mutation p.E831K 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-5L-AAT1-01 12 56975934 56975934 C T RBMS2 Nonsense_Mutation p.Q291* 0.23 TCGA-5L-AAT1-01 12 57464628 57464628 C G TMEM194A Missense_Mutation p.E101Q 0.17 deleterious(0.01) benign(0.307) TCGA-5L-AAT1-01 12 57484944 57484944 G A NAB2 Silent p.L40L 0.18 TCGA-5L-AAT1-01 12 57553669 57553669 C T LRP1 Silent p.D620D 0.19 TCGA-5L-AAT1-01 12 59272800 59272800 G A LRIG3 Missense_Mutation p.P630L 0.19 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 12 6457040 6457040 C T SCNN1A Silent p.%3D 0.14 TCGA-5L-AAT1-01 12 65258551 65258551 C G TBC1D30 Nonsense_Mutation p.S381* 0.15 TCGA-5L-AAT1-01 12 65702433 65702433 C G MSRB3 Intron 0.14 TCGA-5L-AAT1-01 12 66786542 66786542 C G GRIP1 Missense_Mutation p.L676F 0.22 deleterious(0) probably_damaging(0.979) TCGA-5L-AAT1-01 12 6703702 6703702 C T CHD4 Missense_Mutation p.D746N 0.17 tolerated(0.09) benign(0.066) TCGA-5L-AAT1-01 12 6703750 6703750 G C CHD4 Missense_Mutation p.Q730E 0.14 deleterious(0.01) possibly_damaging(0.523) TCGA-5L-AAT1-01 12 6709469 6709469 C T CHD4 Missense_Mutation p.D386N 0.17 deleterious(0) benign(0.073) TCGA-5L-AAT1-01 12 69080776 69080776 G A NUP107 5'UTR 0.13 TCGA-5L-AAT1-01 12 69230503 69230503 G A MDM2 Missense_Mutation p.E298K 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-5L-AAT1-01 12 70088177 70088177 C T BEST3 Missense_Mutation p.E74K 0.23 deleterious(0.02) benign(0.262) TCGA-5L-AAT1-01 12 7050570 7050570 C G ATN1 Missense_Mutation p.S1131C 0.11 probably_damaging(0.99) TCGA-5L-AAT1-01 12 70980807 70980807 G C PTPRB Missense_Mutation p.S764C 0.10 deleterious(0.01) possibly_damaging(0.831) TCGA-5L-AAT1-01 12 70980884 70980884 G A PTPRB Silent p.F738F 0.09 TCGA-5L-AAT1-01 12 71056386 71056386 C T PTPRR Splice_Site p.X500_splice 0.19 TCGA-5L-AAT1-01 12 72338106 72338106 C T TPH2 Silent p.S96S 0.17 TCGA-5L-AAT1-01 12 7309023 7309023 C G CLSTN3 Intron 0.14 TCGA-5L-AAT1-01 12 7354864 7354864 G A PEX5 Missense_Mutation p.E239K 0.23 deleterious(0.02) benign(0.298) TCGA-5L-AAT1-01 12 8330594 8330594 C G ZNF705A 3'UTR 0.19 TCGA-5L-AAT1-01 12 88886984 88886984 C G KITLG 3'Flank 0.18 TCGA-5L-AAT1-01 12 91348230 91348230 G A CCER1 Missense_Mutation p.P97L 0.17 tolerated(0.25) benign(0.235) TCGA-5L-AAT1-01 12 93793155 93793155 G C NUDT4 Nonstop_Mutation p.*182Yext*26 0.04 TCGA-5L-AAT1-01 12 93966600 93966600 C T SOCS2 5'UTR 0.16 TCGA-5L-AAT1-01 12 98987637 98987637 G C SLC25A3 Intron 0.17 TCGA-5L-AAT1-01 13 108863536 108863536 C T LIG4 Silent p.Q27Q 0.16 TCGA-5L-AAT1-01 13 111929934 111929934 G A ARHGEF7 Missense_Mutation p.E495K 0.17 deleterious(0.01) benign(0.377) TCGA-5L-AAT1-01 13 113681278 113681278 C G MCF2L Intron 0.17 TCGA-5L-AAT1-01 13 113917805 113917805 G A CUL4A Missense_Mutation p.G730E 0.14 tolerated(0.06) benign(0.017) TCGA-5L-AAT1-01 13 21549491 21549491 C G LATS2 Missense_Mutation p.E929Q 0.11 tolerated(0.43) probably_damaging(0.928) TCGA-5L-AAT1-01 13 23905278 23905278 G C SACS Nonsense_Mutation p.S4246* 0.16 TCGA-5L-AAT1-01 13 25265283 25265283 C G ATP12A Missense_Mutation p.F327L 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-5L-AAT1-01 13 25283897 25283897 C T ATP12A Silent p.L904L 0.22 TCGA-5L-AAT1-01 13 32698507 32698507 G A FRY Silent p.L183L 0.18 TCGA-5L-AAT1-01 13 36050059 36050059 C T MAB21L1 Missense_Mutation p.E73K 0.19 deleterious(0.01) possibly_damaging(0.655) TCGA-5L-AAT1-01 13 37006774 37006774 C T CCNA1 Missense_Mutation p.P6S 0.17 deleterious_low_confidence(0) benign(0) TCGA-5L-AAT1-01 13 38137354 38137354 G A POSTN 3'UTR 0.10 TCGA-5L-AAT1-01 13 41507403 41507403 G C ELF1 3'UTR 0.17 TCGA-5L-AAT1-01 13 45953431 45953431 G A TPT1-AS1 RNA 0.18 TCGA-5L-AAT1-01 13 46288533 46288533 G A SPERT 3'UTR 0.17 TCGA-5L-AAT1-01 13 47255939 47255939 G C LRCH1 Missense_Mutation p.E215Q 0.14 deleterious(0) benign(0.069) TCGA-5L-AAT1-01 13 48517003 48517003 G A SUCLA2 3'UTR 0.14 TCGA-5L-AAT1-01 13 48517040 48517040 G T SUCLA2 3'UTR 0.18 TCGA-5L-AAT1-01 13 48517069 48517069 G C SUCLA2 3'UTR 0.15 TCGA-5L-AAT1-01 13 48517210 48517210 G C SUCLA2 3'UTR 0.18 TCGA-5L-AAT1-01 13 49762667 49762667 G A FNDC3A Missense_Mutation p.M614I 0.20 tolerated(0.49) benign(0) TCGA-5L-AAT1-01 13 52035233 52035233 G A RPS4XP16 RNA 0.09 TCGA-5L-AAT1-01 13 52606986 52606986 C T UTP14C 3'UTR 0.12 TCGA-5L-AAT1-01 13 52684632 52684632 G T NEK5 Missense_Mutation p.Q132K 0.18 deleterious(0) probably_damaging(0.976) TCGA-5L-AAT1-01 13 52730426 52730426 C G NEK3 5'UTR 0.11 TCGA-5L-AAT1-01 13 77580934 77580934 G A FBXL3 3'UTR 0.11 TCGA-5L-AAT1-01 13 84452113 84452113 G C SLITRK1 3'UTR 0.11 TCGA-5L-AAT1-01 13 92101132 92101132 C T GPC5 Missense_Mutation p.S94F 0.16 tolerated(0.26) probably_damaging(0.953) TCGA-5L-AAT1-01 14 101515032 101515032 C G MIR544A RNA 0.22 TCGA-5L-AAT1-01 14 102029217 102029217 G C DIO3 3'UTR 0.21 TCGA-5L-AAT1-01 14 105878137 105878137 G A TEX22 Silent p.A140A 0.18 TCGA-5L-AAT1-01 14 105964978 105964978 G C C14orf80 Missense_Mutation p.E326Q 0.14 tolerated(0.07) benign(0.139) TCGA-5L-AAT1-01 14 105965160 105965160 G A C14orf80 Silent p.L386L 0.15 TCGA-5L-AAT1-01 14 106388103 106388103 C T KIAA0125 Missense_Mutation p.S71F 0.16 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-5L-AAT1-01 14 20710969 20710969 G C OR11H4 Missense_Mutation p.D7H 0.16 tolerated_low_confidence(0.09) benign(0.001) TCGA-5L-AAT1-01 14 20851409 20851409 G C TEP1 Missense_Mutation p.S1324C 0.10 tolerated(0.07) probably_damaging(0.937) TCGA-5L-AAT1-01 14 21058672 21058672 C T RNASE12 Missense_Mutation p.E71K 0.17 deleterious(0) probably_damaging(0.995) TCGA-5L-AAT1-01 14 21541361 21541361 C T ARHGEF40 Missense_Mutation p.P54L 0.14 deleterious(0) probably_damaging(0.991) TCGA-5L-AAT1-01 14 21829245 21829245 C T SUPT16H Missense_Mutation p.E641K 0.11 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 14 23072829 23072829 G C ABHD4 Splice_Site p.X162_splice 0.19 TCGA-5L-AAT1-01 14 23419586 23419586 C T HAUS4 Missense_Mutation p.E167K 0.12 tolerated(0.12) benign(0.005) TCGA-5L-AAT1-01 14 24551850 24551850 C T NRL Missense_Mutation p.E70K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-5L-AAT1-01 14 25075936 25075936 G T GZMH Missense_Mutation p.P205H 0.14 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 14 29238141 29238141 G C FOXG1 3'UTR 0.13 TCGA-5L-AAT1-01 14 34243572 34243572 G C NPAS3 Silent p.L294L 0.16 TCGA-5L-AAT1-01 14 38061352 38061352 G A FOXA1 Missense_Mutation p.R213C 0.23 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 14 38064156 38064156 C T FOXA1 Missense_Mutation p.E8K 0.16 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT1-01 14 45497395 45497395 C T FAM179B Missense_Mutation p.S1174F 0.14 deleterious(0) possibly_damaging(0.776) TCGA-5L-AAT1-01 14 45542810 45542810 G A FAM179B 3'UTR 0.26 TCGA-5L-AAT1-01 14 45603710 45603710 C T FKBP3 5'UTR 0.29 TCGA-5L-AAT1-01 14 50088830 50088830 G C MGAT2 Missense_Mutation p.E282Q 0.23 tolerated(0.46) benign(0.021) TCGA-5L-AAT1-01 14 50779529 50779529 G A ATP5S 5'UTR 0.19 TCGA-5L-AAT1-01 14 51054572 51054572 G A ATL1 Missense_Mutation p.E20K 0.20 tolerated(0.2) benign(0.034) TCGA-5L-AAT1-01 14 51706992 51706992 G A TMX1 5'UTR 0.22 TCGA-5L-AAT1-01 14 55255877 55255877 G A SAMD4A 3'UTR 0.20 TCGA-5L-AAT1-01 14 57876692 57876692 C G NAA30 3'UTR 0.16 TCGA-5L-AAT1-01 14 63447636 63447636 G C KCNH5 Missense_Mutation p.S299C 0.17 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 14 64587670 64587670 C T SYNE2 Missense_Mutation p.S4350L 0.17 benign(0.318) TCGA-5L-AAT1-01 14 64593421 64593421 G C SYNE2 Missense_Mutation p.E4605Q 0.19 benign(0.077) TCGA-5L-AAT1-01 14 64669646 64669646 G C SYNE2 Missense_Mutation p.D6056H 0.17 probably_damaging(0.979) TCGA-5L-AAT1-01 14 64989680 64989680 G C ZBTB1 Missense_Mutation p.E486D 0.20 tolerated(0.6) probably_damaging(0.97) TCGA-5L-AAT1-01 14 65239639 65239639 C T SPTB Missense_Mutation p.E1738K 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-5L-AAT1-01 14 70633939 70633939 C G SLC8A3 Missense_Mutation p.D401H 0.18 deleterious(0.03) possibly_damaging(0.905) TCGA-5L-AAT1-01 14 70634552 70634552 C G SLC8A3 Missense_Mutation p.K196N 0.19 deleterious(0) probably_damaging(0.944) TCGA-5L-AAT1-01 14 70989969 70989969 G A ADAM20 Silent p.F552F 0.18 TCGA-5L-AAT1-01 14 73436453 73436453 G A ZFYVE1 3'UTR 0.15 TCGA-5L-AAT1-01 14 73436652 73436652 G T ZFYVE1 3'UTR 0.13 TCGA-5L-AAT1-01 14 73436653 73436653 G A ZFYVE1 3'UTR 0.13 TCGA-5L-AAT1-01 14 73572694 73572694 G C RBM25 Missense_Mutation p.D428H 0.14 unknown(0) TCGA-5L-AAT1-01 14 74371671 74371671 G A ZNF410 Silent p.L283L 0.11 TCGA-5L-AAT1-01 14 76117393 76117393 G A C14orf1 3'UTR 0.16 TCGA-5L-AAT1-01 14 76425430 76425430 C T TGFB3 3'UTR 0.20 TCGA-5L-AAT1-01 14 77872347 77872347 C T NOXRED1 Missense_Mutation p.E272K 0.21 tolerated(0.8) benign(0.006) TCGA-5L-AAT1-01 14 81941648 81941648 C T SEL1L 3'UTR 0.23 TCGA-5L-AAT1-01 14 90874500 90874500 G A CALM1 3'UTR 0.18 TCGA-5L-AAT1-01 14 92477342 92477342 C A TRIP11 Silent p.L434L 0.23 TCGA-5L-AAT1-01 14 92960599 92960599 G C SLC24A4 3'UTR 0.19 TCGA-5L-AAT1-01 14 93650188 93650188 C A MOAP1 Nonsense_Mutation p.E134* 0.16 TCGA-5L-AAT1-01 14 93940614 93940614 C G UNC79 5'UTR 0.21 TCGA-5L-AAT1-01 14 94708150 94708150 G C PPP4R4 Missense_Mutation p.L334F 0.17 tolerated(0.1) possibly_damaging(0.493) TCGA-5L-AAT1-01 14 94741713 94741713 G A PPP4R4 Missense_Mutation p.D818N 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.841) TCGA-5L-AAT1-01 14 95553074 95553074 C T DICER1 3'UTR 0.14 TCGA-5L-AAT1-01 14 95553446 95553446 C T DICER1 3'UTR 0.22 TCGA-5L-AAT1-01 14 95553734 95553734 C T DICER1 3'UTR 0.19 TCGA-5L-AAT1-01 14 95562827 95562827 G C DICER1 Missense_Mutation p.S1477C 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.855) TCGA-5L-AAT1-01 14 95875830 95875830 G A LINC00341 RNA 0.21 TCGA-5L-AAT1-01 14 95934260 95934260 G A SYNE3 Silent p.L63L 0.16 TCGA-5L-AAT1-01 14 96937944 96937944 G T AK7 Splice_Site p.X496_splice 0.08 TCGA-5L-AAT1-01 14 98112710 98112710 C T RP11-76E12.1 Splice_Site 0.10 TCGA-5L-AAT1-01 15 100173199 100173199 C G MEF2A 5'UTR 0.18 TCGA-5L-AAT1-01 15 100636558 100636558 C T ADAMTS17 Intron 0.18 TCGA-5L-AAT1-01 15 101569381 101569381 G C LRRK1 Missense_Mutation p.E969D 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-5L-AAT1-01 15 22999495 22999495 G A CYFIP1 Missense_Mutation p.E1123K 0.21 tolerated(0.06) benign(0.137) TCGA-5L-AAT1-01 15 23043665 23043665 C G NIPA1 3'UTR 0.17 TCGA-5L-AAT1-01 15 25427391 25427391 C T SNORD115-6 3'Flank 0.17 TCGA-5L-AAT1-01 15 28446644 28446644 C G HERC2 Missense_Mutation p.L2558F 0.22 possibly_damaging(0.908) TCGA-5L-AAT1-01 15 28463690 28463690 C T HERC2 Silent p.K1991K 0.16 TCGA-5L-AAT1-01 15 28515976 28515976 C T HERC2 Silent p.L374L 0.20 TCGA-5L-AAT1-01 15 29561127 29561127 C T NDNL2 Missense_Mutation p.M261I 0.21 deleterious(0.01) possibly_damaging(0.908) TCGA-5L-AAT1-01 15 30029471 30029471 G A TJP1 Silent p.L468L 0.20 TCGA-5L-AAT1-01 15 31666659 31666659 G A KLF13 3'UTR 0.23 TCGA-5L-AAT1-01 15 32976801 32976801 C T SCG5 Silent p.F140F 0.25 TCGA-5L-AAT1-01 15 33261463 33261463 G A FMN1 Silent p.L590L 0.21 TCGA-5L-AAT1-01 15 34134164 34134164 G A RYR3 Silent p.Q4379Q 0.18 TCGA-5L-AAT1-01 15 34640283 34640283 G A NUTM1 Missense_Mutation p.E44K 0.19 deleterious(0.03) possibly_damaging(0.893) TCGA-5L-AAT1-01 15 34819643 34819643 C T GOLGA8B 3'UTR 0.08 TCGA-5L-AAT1-01 15 38632057 38632057 G C SPRED1 Silent p.L181L 0.13 TCGA-5L-AAT1-01 15 38766486 38766486 C G FAM98B Missense_Mutation p.S239C 0.18 deleterious(0.03) possibly_damaging(0.663) TCGA-5L-AAT1-01 15 40758423 40758423 G A BAHD1 3'UTR 0.15 TCGA-5L-AAT1-01 15 41799317 41799317 G A LTK Missense_Mutation p.S506F 0.24 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-5L-AAT1-01 15 41804994 41804994 G A LTK Silent p.Y90Y 0.13 TCGA-5L-AAT1-01 15 43045190 43045190 G A TTBK2 Nonsense_Mutation p.Q752* 0.08 TCGA-5L-AAT1-01 15 43398154 43398154 G A UBR1 Nonsense_Mutation p.Q23* 0.06 TCGA-5L-AAT1-01 15 43815251 43815251 C T MAP1A Missense_Mutation p.S527L 0.19 probably_damaging(0.998) TCGA-5L-AAT1-01 15 44029115 44029115 C T RNU6-354P 5'Flank 0.06 TCGA-5L-AAT1-01 15 44065337 44065337 C T ELL3 Missense_Mutation p.E391K 0.07 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 15 44065388 44065388 C G ELL3 Missense_Mutation p.E374Q 0.09 deleterious(0.01) probably_damaging(1) TCGA-5L-AAT1-01 15 44143324 44143324 C A WDR76 Missense_Mutation p.P358T 0.18 deleterious(0.03) possibly_damaging(0.612) TCGA-5L-AAT1-01 15 44194422 44194422 C G FRMD5 Missense_Mutation p.R197T 0.19 deleterious(0.04) possibly_damaging(0.532) TCGA-5L-AAT1-01 15 44707395 44707395 C T CASC4 3'UTR 0.05 TCGA-5L-AAT1-01 15 45454028 45454028 G A DUOX1 Missense_Mutation p.E1317K 0.23 deleterious(0) probably_damaging(0.996) TCGA-5L-AAT1-01 15 49338609 49338609 C G SECISBP2L 5'UTR 0.14 TCGA-5L-AAT1-01 15 50570149 50570149 C G GABPB1 3'UTR 0.14 TCGA-5L-AAT1-01 15 50570649 50570649 C G GABPB1 3'UTR 0.10 TCGA-5L-AAT1-01 15 50570939 50570939 C A GABPB1 Nonsense_Mutation p.E360* 0.15 TCGA-5L-AAT1-01 15 50884275 50884275 C G TRPM7 Missense_Mutation p.S1386T 0.18 tolerated_low_confidence(0.27) benign(0.014) TCGA-5L-AAT1-01 15 51040900 51040900 G C SPPL2A Silent p.V115V 0.16 TCGA-5L-AAT1-01 15 52058677 52058677 G A TMOD2 Silent p.K13K 0.18 TCGA-5L-AAT1-01 15 54306842 54306842 C T UNC13C Missense_Mutation p.S581F 0.18 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-5L-AAT1-01 15 54799378 54799378 G A UNC13C Missense_Mutation p.D1789N 0.13 tolerated_low_confidence(0.34) benign(0.001) TCGA-5L-AAT1-01 15 55652062 55652062 G A CCPG1 Nonsense_Mutation p.Q637* 0.18 TCGA-5L-AAT1-01 15 57731055 57731055 C T CGNL1 Silent p.P286P 0.14 TCGA-5L-AAT1-01 15 59191790 59191790 C T SLTM Silent p.V312V 0.21 TCGA-5L-AAT1-01 15 59323008 59323008 C T RNF111 5'UTR 0.24 TCGA-5L-AAT1-01 15 59956241 59956241 C T BNIP2 3'UTR 0.17 TCGA-5L-AAT1-01 15 63889678 63889678 G T FBXL22 Missense_Mutation p.R29S 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-5L-AAT1-01 15 63889721 63889721 G C FBXL22 Missense_Mutation p.E44Q 0.24 tolerated_low_confidence(0.16) possibly_damaging(0.899) TCGA-5L-AAT1-01 15 63889843 63889843 G A FBXL22 Silent p.Q84Q 0.17 TCGA-5L-AAT1-01 15 63889856 63889856 G A FBXL22 Missense_Mutation p.E89K 0.17 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-5L-AAT1-01 15 64067203 64067203 G C HERC1 Nonsense_Mutation p.S207* 0.10 TCGA-5L-AAT1-01 15 64747385 64747385 G C TRIP4 3'UTR 0.23 TCGA-5L-AAT1-01 15 65868985 65868985 C G PTPLAD1 3'UTR 0.17 TCGA-5L-AAT1-01 15 65903420 65903420 C T VWA9 Intron 0.18 TCGA-5L-AAT1-01 15 66844504 66844504 G A LCTL Nonsense_Mutation p.Q401* 0.20 TCGA-5L-AAT1-01 15 66994720 66994720 C T SMAD6 5'UTR 0.14 TCGA-5L-AAT1-01 15 68661529 68661529 G C ITGA11 Silent p.L86L 0.22 TCGA-5L-AAT1-01 15 73595607 73595607 G C NEO1 3'UTR 0.20 TCGA-5L-AAT1-01 15 73925658 73925658 G C NPTN 5'UTR 0.17 TCGA-5L-AAT1-01 15 74327310 74327310 C T PML Intron 0.19 TCGA-5L-AAT1-01 15 74741538 74741538 G A UBL7 Missense_Mutation p.P291S 0.17 tolerated(0.49) probably_damaging(0.994) TCGA-5L-AAT1-01 15 78568062 78568062 C T DNAJA4 Missense_Mutation p.S319F 0.20 tolerated(0.11) benign(0.412) TCGA-5L-AAT1-01 15 81217032 81217032 C G KIAA1199 Nonsense_Mutation p.S758* 0.18 TCGA-5L-AAT1-01 15 81616410 81616410 C A STARD5 Nonsense_Mutation p.E11* 0.16 TCGA-5L-AAT1-01 15 83224871 83224871 G C CPEB1 Nonsense_Mutation p.S203* 0.15 TCGA-5L-AAT1-01 15 85149911 85149911 C T ZSCAN2 Intron 0.30 TCGA-5L-AAT1-01 15 85681638 85681638 G A PDE8A 3'UTR 0.16 TCGA-5L-AAT1-01 15 91453848 91453848 C T MAN2A2 Silent p.L565L 0.13 TCGA-5L-AAT1-01 15 91509608 91509608 C G PRC1 3'UTR 0.15 TCGA-5L-AAT1-01 15 92937375 92937375 G C ST8SIA2 Missense_Mutation p.E27D 0.14 benign(0.034) TCGA-5L-AAT1-01 15 93543824 93543824 C T CHD2 Missense_Mutation p.S1364L 0.20 tolerated(0.06) benign(0.003) TCGA-5L-AAT1-01 15 94899319 94899319 C G MCTP2 Intron 0.15 TCGA-5L-AAT1-01 15 98504101 98504101 G C ARRDC4 Missense_Mutation p.E4Q 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-5L-AAT1-01 16 10625684 10625684 G A EMP2 3'UTR 0.20 TCGA-5L-AAT1-01 16 1255152 1255152 C T CACNA1H Silent p.I830I 0.13 TCGA-5L-AAT1-01 16 1273464 1273464 G T TPSG1 Silent p.L68L 0.21 TCGA-5L-AAT1-01 16 14014044 14014044 C T ERCC4 Nonsense_Mutation p.R8* 0.17 TCGA-5L-AAT1-01 16 14026115 14026115 G A ERCC4 Missense_Mutation p.E359K 0.14 tolerated(0.2) benign(0.039) TCGA-5L-AAT1-01 16 15528409 15528409 C T C16orf45 5'UTR 0.28 TCGA-5L-AAT1-01 16 1570045 1570045 C T IFT140 Missense_Mutation p.E1293K 0.05 deleterious(0) probably_damaging(0.982) TCGA-5L-AAT1-01 16 18550278 18550278 G A NOMO2 Silent p.F324F 0.11 TCGA-5L-AAT1-01 16 18879616 18879616 G A SMG1 Nonsense_Mutation p.R1031* 0.20 TCGA-5L-AAT1-01 16 20371898 20371898 C T PDILT Missense_Mutation p.E500K 0.14 tolerated(0.21) benign(0.055) TCGA-5L-AAT1-01 16 2052204 2052204 C T ZNF598 Intron 0.17 TCGA-5L-AAT1-01 16 20990838 20990838 C G DNAH3 Missense_Mutation p.E2630D 0.20 tolerated(0.06) possibly_damaging(0.593) TCGA-5L-AAT1-01 16 2222339 2222339 G A TRAF7 Missense_Mutation p.R208Q 0.24 tolerated(0.6) benign(0.001) TCGA-5L-AAT1-01 16 2326591 2326591 G A ABCA3 3'UTR 0.13 TCGA-5L-AAT1-01 16 2326723 2326723 G C ABCA3 Missense_Mutation p.F1689L 0.19 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 16 23489790 23489790 C T GGA2 Silent p.R397R 0.15 TCGA-5L-AAT1-01 16 23647615 23647615 G A PALB2 Silent p.I84I 0.14 TCGA-5L-AAT1-01 16 23677038 23677038 C G DCTN5 Nonsense_Mutation p.S147* 0.08 TCGA-5L-AAT1-01 16 2460298 2460298 C G ABCA17P RNA 0.10 TCGA-5L-AAT1-01 16 2472605 2472605 C T ABCA17P RNA 0.19 TCGA-5L-AAT1-01 16 27499694 27499694 G A GTF3C1 Missense_Mutation p.S1185F 0.15 tolerated(0.09) benign(0.006) TCGA-5L-AAT1-01 16 28493959 28493959 C A CLN3 Missense_Mutation p.W275C 0.15 tolerated(0.12) probably_damaging(0.918) TCGA-5L-AAT1-01 16 28508841 28508841 G A APOBR Missense_Mutation p.E827K 0.23 deleterious(0.03) possibly_damaging(0.486) TCGA-5L-AAT1-01 16 28509162 28509162 G A APOBR Missense_Mutation p.E934K 0.15 deleterious(0.02) benign(0.017) TCGA-5L-AAT1-01 16 28509655 28509655 G C APOBR Missense_Mutation p.R1070T 0.15 deleterious(0) unknown(0) TCGA-5L-AAT1-01 16 29678250 29678250 G A SPN 3'UTR 0.22 TCGA-5L-AAT1-01 16 29993184 29993184 G A TAOK2 Missense_Mutation p.E252K 0.22 tolerated(0.1) benign(0.037) TCGA-5L-AAT1-01 16 30721266 30721266 G A SRCAP Silent p.Q317Q 0.17 TCGA-5L-AAT1-01 16 3073482 3073482 C G HCFC1R1 Missense_Mutation p.E49Q 0.19 tolerated_low_confidence(0.06) benign(0.015) TCGA-5L-AAT1-01 16 31088345 31088345 G C ZNF646 Missense_Mutation p.E234Q 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-5L-AAT1-01 16 3614028 3614028 C T NLRC3 Missense_Mutation p.E351K 0.12 tolerated(0.09) benign(0.077) TCGA-5L-AAT1-01 16 3823847 3823847 G T CREBBP Missense_Mutation p.Q790K 0.15 probably_damaging(0.965) TCGA-5L-AAT1-01 16 4797521 4797521 G C C16orf71 Missense_Mutation p.Q486H 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-5L-AAT1-01 16 48117856 48117856 G C ABCC12 Silent p.L1319L 0.20 TCGA-5L-AAT1-01 16 48304149 48304149 G T LONP2 Missense_Mutation p.G402V 0.16 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 16 49524849 49524849 C G ZNF423 3'UTR 0.17 TCGA-5L-AAT1-01 16 55358955 55358955 G A IRX6 5'UTR 0.29 TCGA-5L-AAT1-01 16 57778368 57778368 C T KATNB1 Silent p.I78I 0.20 TCGA-5L-AAT1-01 16 57778395 57778395 C A KATNB1 Silent p.I87I 0.20 TCGA-5L-AAT1-01 16 58010361 58010361 C T TEPP 5'UTR 0.21 TCGA-5L-AAT1-01 16 602382 602382 C T CAPN15 Silent p.L863L 0.13 TCGA-5L-AAT1-01 16 603616 603616 C T CAPN15 3'UTR 0.20 TCGA-5L-AAT1-01 16 604479 604479 C G CAPN15 3'UTR 0.12 TCGA-5L-AAT1-01 16 66756069 66756069 C G DYNC1LI2 3'UTR 0.23 TCGA-5L-AAT1-01 16 67166394 67166394 G C C16orf70 Missense_Mutation p.Q107H 0.30 deleterious(0) possibly_damaging(0.876) TCGA-5L-AAT1-01 16 67405043 67405043 C A LRRC36 Silent p.T464T 0.14 TCGA-5L-AAT1-01 16 67977676 67977676 G A SLC12A4 3'UTR 0.21 TCGA-5L-AAT1-01 16 67983732 67983732 G A SLC12A4 Silent p.S575S 0.14 TCGA-5L-AAT1-01 16 67983733 67983733 G A SLC12A4 Missense_Mutation p.S575F 0.14 deleterious(0.04) probably_damaging(0.945) TCGA-5L-AAT1-01 16 68155994 68155994 C T NFATC3 Missense_Mutation p.H70Y 0.14 deleterious(0.03) benign(0.144) TCGA-5L-AAT1-01 16 68288910 68288910 G C PLA2G15 Missense_Mutation p.E125Q 0.19 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 16 68308803 68308803 G C SLC7A6 Missense_Mutation p.M58I 0.24 tolerated(1) benign(0.163) TCGA-5L-AAT1-01 16 684903 684903 C G C16orf13 Intron 0.19 TCGA-5L-AAT1-01 16 68772306 68772307 - G CDH1 Frame_Shift_Ins p.R54Qfs*5 0.18 TCGA-5L-AAT1-01 16 70055808 70055808 G A PDXDC2P RNA 0.05 TCGA-5L-AAT1-01 16 70287655 70287655 G T AARS Missense_Mutation p.L857I 0.23 tolerated(0.26) benign(0.392) TCGA-5L-AAT1-01 16 732629 732629 C G JMJD8 3'UTR 0.21 TCGA-5L-AAT1-01 16 74752963 74752963 G T FA2H Missense_Mutation p.L237M 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-5L-AAT1-01 16 7760842 7760842 A G RBFOX1 3'UTR 0.15 TCGA-5L-AAT1-01 16 816765 816765 C T MSLN Missense_Mutation p.S451F 0.14 tolerated(0.78) benign(0.006) TCGA-5L-AAT1-01 16 837410 837410 C T RPUSD1 Missense_Mutation p.G84S 0.22 tolerated(0.12) probably_damaging(0.916) TCGA-5L-AAT1-01 16 838718 838718 G A CHTF18 Missense_Mutation p.E12K 0.22 deleterious(0.03) benign(0.202) TCGA-5L-AAT1-01 16 8948794 8948794 C G CARHSP1 3'UTR 0.18 TCGA-5L-AAT1-01 16 8948984 8948984 C T CARHSP1 3'UTR 0.17 TCGA-5L-AAT1-01 16 8949149 8949149 C T CARHSP1 Missense_Mutation p.E106K 0.14 deleterious(0.03) possibly_damaging(0.749) TCGA-5L-AAT1-01 16 8990887 8990887 C G USP7 Missense_Mutation p.E930Q 0.08 tolerated(0.24) benign(0.007) TCGA-5L-AAT1-01 16 9014229 9014229 G C USP7 Missense_Mutation p.P200A 0.15 deleterious(0) probably_damaging(0.983) TCGA-5L-AAT1-01 16 9858710 9858710 G A GRIN2A Silent p.L897L 0.26 TCGA-5L-AAT1-01 17 10318616 10318616 G C MYH8 Missense_Mutation p.S245C 0.21 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 17 10411975 10411975 G C MYH1 Missense_Mutation p.F534L 0.14 tolerated(0.41) benign(0.044) TCGA-5L-AAT1-01 17 12046644 12046644 G C MAP2K4 3'UTR 0.15 TCGA-5L-AAT1-01 17 12569323 12569323 G A MYOCD 5'UTR 0.38 TCGA-5L-AAT1-01 17 1421303 1421303 G C PITPNA 3'UTR 0.09 TCGA-5L-AAT1-01 17 18040955 18040955 C T MYO15A Nonsense_Mutation p.Q1613* 0.08 TCGA-5L-AAT1-01 17 18659399 18659399 G A FBXW10 Silent p.T388T 0.14 TCGA-5L-AAT1-01 17 19619769 19619769 G C SLC47A2 Missense_Mutation p.L34V 0.06 deleterious(0) benign(0.139) TCGA-5L-AAT1-01 17 20000037 20000037 C T SPECC1 Silent p.L25L 0.12 TCGA-5L-AAT1-01 17 20217322 20217322 G A SPECC1 Missense_Mutation p.D1051N 0.26 deleterious(0.03) possibly_damaging(0.514) TCGA-5L-AAT1-01 17 21476915 21476915 C T AC138710.1 5'Flank 0.17 TCGA-5L-AAT1-01 17 2239812 2239812 G T TSR1 5'UTR 0.20 TCGA-5L-AAT1-01 17 2283524 2283524 C T SGSM2 3'UTR 0.19 TCGA-5L-AAT1-01 17 26948027 26948027 C G KIAA0100 Missense_Mutation p.D1741H 0.13 deleterious(0.03) benign(0.403) TCGA-5L-AAT1-01 17 27958086 27958086 C T SSH2 Missense_Mutation p.E1349K 0.15 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-5L-AAT1-01 17 28386617 28386617 C T EFCAB5 Nonsense_Mutation p.Q879* 0.13 TCGA-5L-AAT1-01 17 28853611 28853611 C T GOSR1 3'UTR 0.22 TCGA-5L-AAT1-01 17 29070381 29070381 C G SUZ12P RNA 0.16 TCGA-5L-AAT1-01 17 29546098 29546098 C T NF1 Nonsense_Mutation p.Q535* 0.33 TCGA-5L-AAT1-01 17 29562626 29562626 C T NF1 Intron 0.19 TCGA-5L-AAT1-01 17 29631562 29631562 C G EVI2B Missense_Mutation p.D356H 0.25 deleterious(0) benign(0.066) TCGA-5L-AAT1-01 17 34073038 34073038 G A GAS2L2 Missense_Mutation p.S493F 0.23 deleterious(0) possibly_damaging(0.873) TCGA-5L-AAT1-01 17 35443989 35443989 C T ACACA 3'UTR 0.19 TCGA-5L-AAT1-01 17 36490621 36490621 C G GPR179 Missense_Mutation p.E584Q 0.22 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 17 37949030 37949030 G C IKZF3 Nonsense_Mutation p.S107* 0.24 TCGA-5L-AAT1-01 17 38785228 38785228 C T SMARCE1 Missense_Mutation p.E349K 0.16 deleterious(0.01) benign(0.126) TCGA-5L-AAT1-01 17 38907540 38907540 C T KRT25 Silent p.V236V 0.14 TCGA-5L-AAT1-01 17 39197375 39197375 C G KRTAP1-1 Missense_Mutation p.G92A 0.26 tolerated(0.39) probably_damaging(0.939) TCGA-5L-AAT1-01 17 39503187 39503187 G A KRT33A Missense_Mutation p.S262L 0.25 deleterious(0.03) benign(0.081) TCGA-5L-AAT1-01 17 39680695 39680695 C A KRT19 Missense_Mutation p.R253L 0.17 deleterious(0) probably_damaging(0.993) TCGA-5L-AAT1-01 17 39680778 39680778 C T KRT19 Silent p.L225L 0.15 TCGA-5L-AAT1-01 17 40317573 40317573 C T KCNH4 Missense_Mutation p.R660Q 0.15 tolerated(0.4) benign(0.009) TCGA-5L-AAT1-01 17 40444055 40444055 G C STAT5A Missense_Mutation p.Q117H 0.13 deleterious(0.05) possibly_damaging(0.489) TCGA-5L-AAT1-01 17 4068170 4068170 G A ANKFY1 3'Flank 0.20 TCGA-5L-AAT1-01 17 40733826 40733826 C G FAM134C 3'UTR 0.25 TCGA-5L-AAT1-01 17 41165631 41165631 C T IFI35 Missense_Mutation p.R174W 0.10 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 17 41166214 41166214 C T IFI35 Silent p.I255I 0.20 TCGA-5L-AAT1-01 17 41166886 41166886 C G VAT1 3'UTR 0.19 TCGA-5L-AAT1-01 17 41363397 41363397 G T NBR1 3'UTR 0.12 TCGA-5L-AAT1-01 17 41584391 41584391 C T DHX8 Silent p.I583I 0.06 TCGA-5L-AAT1-01 17 42089255 42089255 C T TMEM101 3'UTR 0.28 TCGA-5L-AAT1-01 17 42253977 42253977 G A ASB16 Intron 0.26 TCGA-5L-AAT1-01 17 42255834 42255834 C G ASB16 3'UTR 0.10 TCGA-5L-AAT1-01 17 42739736 42739736 G A C17orf104 Missense_Mutation p.E86K 0.17 tolerated(0.21) probably_damaging(0.997) TCGA-5L-AAT1-01 17 43189973 43189973 G A PLCD3 3'UTR 0.23 TCGA-5L-AAT1-01 17 43333141 43333141 G A SPATA32 Silent p.F136F 0.10 TCGA-5L-AAT1-01 17 4389787 4389787 C T SPNS3 Silent p.C453C 0.18 TCGA-5L-AAT1-01 17 4536761 4536761 A T ALOX15 Missense_Mutation p.I399N 0.10 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 17 4580066 4580066 C G PELP1 Missense_Mutation p.L228F 0.12 probably_damaging(0.949) TCGA-5L-AAT1-01 17 46700414 46700414 C T HOXB9 Missense_Mutation p.E201K 0.18 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 17 4700853 4700853 C A PSMB6 Silent p.L97L 0.16 TCGA-5L-AAT1-01 17 47132244 47132244 G C IGF2BP1 3'UTR 0.21 TCGA-5L-AAT1-01 17 48545818 48545818 G A CHAD Silent p.F119F 0.13 TCGA-5L-AAT1-01 17 4925690 4925690 G C KIF1C Missense_Mutation p.E772Q 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.727) TCGA-5L-AAT1-01 17 57232376 57232376 G A SKA2 Intron 0.16 TCGA-5L-AAT1-01 17 57288595 57288595 G A SMG8 Missense_Mutation p.D395N 0.27 deleterious(0.04) benign(0.187) TCGA-5L-AAT1-01 17 58524205 58524205 C G APPBP2 3'UTR 0.43 TCGA-5L-AAT1-01 17 58740498 58740498 C G PPM1D Nonsense_Mutation p.S468* 0.15 TCGA-5L-AAT1-01 17 60447652 60447652 G A EFCAB3 Translation_Start_Site p.M1? 0.15 tolerated_low_confidence(0.11) benign(0.005) TCGA-5L-AAT1-01 17 61615529 61615529 C T KCNH6 Silent p.F535F 0.09 TCGA-5L-AAT1-01 17 62025268 62025268 G A SCN4A Silent p.L1100L 0.09 TCGA-5L-AAT1-01 17 62461579 62461579 G A MILR1 Missense_Mutation p.M4I 0.18 tolerated(0.06) benign(0.223) TCGA-5L-AAT1-01 17 62758126 62758126 G C hsa-mir-6080 RNA 0.14 TCGA-5L-AAT1-01 17 66872620 66872620 C T ABCA8 Missense_Mutation p.E1411K 0.19 tolerated(0.43) benign(0.187) TCGA-5L-AAT1-01 17 66918387 66918387 C G ABCA8 Missense_Mutation p.L499F 0.16 deleterious(0) probably_damaging(0.918) TCGA-5L-AAT1-01 17 67149526 67149526 C A ABCA10 Silent p.L1352L 0.18 TCGA-5L-AAT1-01 17 68129171 68129171 G C KCNJ16 Missense_Mutation p.E315Q 0.22 tolerated(0.33) benign(0.025) TCGA-5L-AAT1-01 17 7216889 7216889 C G GPS2 Missense_Mutation p.R211T 0.23 deleterious(0) possibly_damaging(0.765) TCGA-5L-AAT1-01 17 7218460 7218460 G C GPS2 Intron 0.31 TCGA-5L-AAT1-01 17 7218941 7218941 G T EIF5A 3'Flank 0.19 TCGA-5L-AAT1-01 17 7218992 7218992 G A NEURL4 3'UTR 0.23 TCGA-5L-AAT1-01 17 72322422 72322422 G C KIF19 5'UTR 0.23 TCGA-5L-AAT1-01 17 72954527 72954527 C T HID1 Silent p.L429L 0.29 TCGA-5L-AAT1-01 17 73264222 73264222 G C MIF4GD Missense_Mutation p.S86C 0.14 deleterious(0) probably_damaging(0.992) TCGA-5L-AAT1-01 17 7481483 7481483 G T EIF4A1 Missense_Mutation p.A333S 0.19 deleterious(0.04) benign(0.128) TCGA-5L-AAT1-01 17 76166981 76166981 C G SYNGR2 Missense_Mutation p.F61L 0.16 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 17 7630515 7630515 C T DNAH2 Silent p.L102L 0.15 TCGA-5L-AAT1-01 17 7727894 7727894 C T DNAH2 Missense_Mutation p.S3901F 0.17 probably_damaging(0.999) TCGA-5L-AAT1-01 17 78313867 78313867 G A RNF213 Silent p.L1900L 0.29 TCGA-5L-AAT1-01 17 78337011 78337011 G A RNF213 Missense_Mutation p.R3822K 0.10 benign(0.063) TCGA-5L-AAT1-01 17 78441377 78441377 C A NPTX1 3'UTR 0.14 TCGA-5L-AAT1-01 17 78518926 78518926 C G RPTOR 5'Flank 0.16 TCGA-5L-AAT1-01 17 79089834 79089834 G A BAIAP2 Intron 0.12 TCGA-5L-AAT1-01 17 79172674 79172674 G C AZI1 Intron 0.13 TCGA-5L-AAT1-01 17 79204461 79204461 G A ENTHD2 Silent p.I304I 0.18 TCGA-5L-AAT1-01 17 79495793 79495793 G C FSCN2 Missense_Mutation p.C79S 0.19 deleterious(0.01) probably_damaging(1) TCGA-5L-AAT1-01 17 80045252 80045252 C G FASN Missense_Mutation p.D1058H 0.17 deleterious(0.04) probably_damaging(0.95) TCGA-5L-AAT1-01 17 80156252 80156252 G C CCDC57 Missense_Mutation p.L152V 0.24 tolerated(0.07) possibly_damaging(0.779) TCGA-5L-AAT1-01 17 80529680 80529680 G A FOXK2 Silent p.L281L 0.17 TCGA-5L-AAT1-01 17 8136243 8136243 G A CTC1 Silent p.L642L 0.17 TCGA-5L-AAT1-01 17 9814197 9814197 C G GAS7 3'Flank 0.14 TCGA-5L-AAT1-01 17 9830027 9830027 C T GAS7 Missense_Mutation p.M315I 0.16 deleterious(0.04) benign(0.344) TCGA-5L-AAT1-01 18 10759538 10759538 G A PIEZO2 Silent p.I1208I 0.13 TCGA-5L-AAT1-01 18 19449675 19449675 G C MIB1 3'UTR 0.10 TCGA-5L-AAT1-01 18 19781338 19781338 C G GATA6 3'UTR 0.17 TCGA-5L-AAT1-01 18 28968376 28968376 C G DSG4 Missense_Mutation p.S88C 0.10 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 18 29867999 29867999 G C GAREM Missense_Mutation p.I187M 0.23 deleterious(0.04) possibly_damaging(0.579) TCGA-5L-AAT1-01 18 31325520 31325520 C T ASXL3 Missense_Mutation p.S1903L 0.17 benign(0.154) TCGA-5L-AAT1-01 18 32471285 32471285 G C DTNA 3'Flank 0.09 TCGA-5L-AAT1-01 18 34740198 34740198 G A KIAA1328 Missense_Mutation p.G423E 0.28 tolerated(0.07) benign(0.009) TCGA-5L-AAT1-01 18 34854511 34854511 C T CELF4 Intron 0.29 TCGA-5L-AAT1-01 18 3508657 3508657 G A DLGAP1 Silent p.L828L 0.09 TCGA-5L-AAT1-01 18 35145482 35145482 C T CELF4 Silent p.G41G 0.16 TCGA-5L-AAT1-01 18 39584443 39584443 C T PIK3C3 Missense_Mutation p.H370Y 0.06 deleterious(0.04) benign(0.317) TCGA-5L-AAT1-01 18 44139230 44139230 C G LOXHD1 5'UTR 0.27 TCGA-5L-AAT1-01 18 44559517 44559517 C T TCEB3B Missense_Mutation p.E707K 0.22 deleterious(0.01) possibly_damaging(0.636) TCGA-5L-AAT1-01 18 47812628 47812628 C T CXXC1 Splice_Site p.X75_splice 0.11 TCGA-5L-AAT1-01 18 50683803 50683803 C T DCC Missense_Mutation p.L447F 0.22 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT1-01 18 50683872 50683872 G T DCC Missense_Mutation p.G470C 0.17 deleterious(0) possibly_damaging(0.867) TCGA-5L-AAT1-01 18 52890927 52890940 TGAAATGTTTTCCC AAATGTTTTCCCTT TCF4 3'Flank 0.08 TCGA-5L-AAT1-01 18 55021723 55021723 G A ST8SIA3 Nonsense_Mutation p.W90* 0.06 TCGA-5L-AAT1-01 18 56202537 56202537 C G ALPK2 Missense_Mutation p.E1628Q 0.22 tolerated(0.11) benign(0.147) TCGA-5L-AAT1-01 18 5969550 5969550 C G L3MBTL4 Missense_Mutation p.E495Q 0.16 tolerated(0.52) benign(0.003) TCGA-5L-AAT1-01 18 61034377 61034377 G A KDSR 5'UTR 0.20 TCGA-5L-AAT1-01 18 67788882 67788882 G A RTTN Silent p.I1146I 0.21 TCGA-5L-AAT1-01 18 7034659 7034659 C T LAMA1 Missense_Mutation p.E624K 0.15 tolerated(0.21) benign(0.049) TCGA-5L-AAT1-01 18 73122237 73122237 C T SMIM21 3'UTR 0.25 TCGA-5L-AAT1-01 18 74980785 74980785 C G GALR1 Nonsense_Mutation p.S326* 0.15 TCGA-5L-AAT1-01 18 9221849 9221849 G C ANKRD12 Splice_Site p.X266_splice 0.11 TCGA-5L-AAT1-01 18 9862149 9862149 G A RAB31 3'UTR 0.15 TCGA-5L-AAT1-01 19 10572350 10572350 C G PDE4A Missense_Mutation p.I538M 0.18 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 19 10672490 10672490 C A KRI1 Nonsense_Mutation p.E145* 0.12 TCGA-5L-AAT1-01 19 10697918 10697918 G A AP1M2 5'UTR 0.11 TCGA-5L-AAT1-01 19 1081859 1081859 G T HMHA1 Nonsense_Mutation p.E822* 0.10 TCGA-5L-AAT1-01 19 11727597 11727597 G A ZNF627 Silent p.K93K 0.20 TCGA-5L-AAT1-01 19 12155753 12155753 G A ZNF878 Missense_Mutation p.P155S 0.20 tolerated(0.44) benign(0.004) TCGA-5L-AAT1-01 19 12187081 12187081 G T ZNF844 Missense_Mutation p.M382I 0.22 tolerated(0.4) benign(0.011) TCGA-5L-AAT1-01 19 12305926 12305926 G T CTD-2666L21.1 RNA 0.20 TCGA-5L-AAT1-01 19 12444460 12444460 G A ZNF563 5'UTR 0.12 TCGA-5L-AAT1-01 19 12638556 12638556 G C ZNF564 Missense_Mutation p.I122M 0.18 tolerated(0.32) benign(0.063) TCGA-5L-AAT1-01 19 12757462 12757462 G T MAN2B1 Nonsense_Mutation p.S1003* 0.21 TCGA-5L-AAT1-01 19 13255379 13255379 G A STX10 Intron 0.22 TCGA-5L-AAT1-01 19 13255384 13255384 G A STX10 Intron 0.24 TCGA-5L-AAT1-01 19 13875375 13875375 G A MRI1 5'UTR 0.16 TCGA-5L-AAT1-01 19 1390968 1390968 C T NDUFS7 Silent p.V109V 0.15 TCGA-5L-AAT1-01 19 14041545 14041545 C T CC2D1A 3'UTR 0.04 TCGA-5L-AAT1-01 19 14268241 14268241 G A LPHN1 Missense_Mutation p.S861L 0.25 tolerated(0.39) benign(0.104) TCGA-5L-AAT1-01 19 14273616 14273616 C T LPHN1 Missense_Mutation p.E338K 0.21 deleterious(0) probably_damaging(0.958) TCGA-5L-AAT1-01 19 14758011 14758011 C T EMR3 Silent p.L288L 0.20 TCGA-5L-AAT1-01 19 14863338 14863338 C T EMR2 Missense_Mutation p.E531K 0.16 tolerated(0.09) benign(0.21) TCGA-5L-AAT1-01 19 14939011 14939011 G T OR7A5 Missense_Mutation p.L15M 0.24 deleterious_low_confidence(0.04) probably_damaging(0.954) TCGA-5L-AAT1-01 19 15807739 15807739 C T CYP4F12 Silent p.F473F 0.13 TCGA-5L-AAT1-01 19 15905709 15905709 C T OR10H5 Missense_Mutation p.P284L 0.20 deleterious(0) possibly_damaging(0.884) TCGA-5L-AAT1-01 19 16038265 16038265 G C CYP4F11 Missense_Mutation p.F124L 0.16 tolerated(0.11) benign(0.02) TCGA-5L-AAT1-01 19 16222810 16222810 C G RAB8A Missense_Mutation p.F33L 0.15 deleterious(0.03) benign(0.137) TCGA-5L-AAT1-01 19 16872873 16872873 C G NWD1 Nonsense_Mutation p.S686* 0.21 TCGA-5L-AAT1-01 19 16872911 16872911 C T NWD1 Silent p.L699L 0.17 TCGA-5L-AAT1-01 19 17438128 17438128 G A ANO8 Silent p.L859L 0.24 TCGA-5L-AAT1-01 19 17571369 17571369 C G NXNL1 Missense_Mutation p.E104Q 0.17 tolerated(0.51) benign(0.034) TCGA-5L-AAT1-01 19 1905381 1905381 G A ADAT3 5'UTR 0.19 TCGA-5L-AAT1-01 19 19740958 19740958 C G GMIP Silent p.R909R 0.16 TCGA-5L-AAT1-01 19 19760373 19760373 C T ATP13A1 Intron 0.22 TCGA-5L-AAT1-01 19 20229534 20229534 C G ZNF90 Missense_Mutation p.H391D 0.14 deleterious(0) possibly_damaging(0.576) TCGA-5L-AAT1-01 19 2050866 2050866 C T MKNK2 5'UTR 0.23 TCGA-5L-AAT1-01 19 21300332 21300332 G A ZNF714 Missense_Mutation p.E288K 0.17 deleterious(0.04) benign(0.106) TCGA-5L-AAT1-01 19 22154031 22154031 T A ZNF208 Missense_Mutation p.S1269C 0.07 deleterious(0.04) possibly_damaging(0.771) TCGA-5L-AAT1-01 19 30303566 30303566 C T CCNE1 Intron 0.16 TCGA-5L-AAT1-01 19 30496265 30496265 C T URI1 Intron 0.18 TCGA-5L-AAT1-01 19 30500217 30500217 C T URI1 Missense_Mutation p.S331F 0.21 tolerated(0.06) benign(0.062) TCGA-5L-AAT1-01 19 33462792 33462792 G C CEP89 5'UTR 0.20 TCGA-5L-AAT1-01 19 33701388 33701388 G T SLC7A10 Silent p.L416L 0.22 TCGA-5L-AAT1-01 19 34919428 34919428 G C UBA2 Missense_Mutation p.E31Q 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-5L-AAT1-01 19 35085146 35085146 G A SCGB2B2 Silent p.F60F 0.15 TCGA-5L-AAT1-01 19 35174921 35174921 C G ZNF302 Intron 0.18 TCGA-5L-AAT1-01 19 3576924 3576924 G T HMG20B Missense_Mutation p.M209I 0.19 tolerated(0.15) benign(0.225) TCGA-5L-AAT1-01 19 36322609 36322609 G A NPHS1 Silent p.L1074L 0.17 TCGA-5L-AAT1-01 19 36506715 36506715 G C CLIP3 3'UTR 0.12 TCGA-5L-AAT1-01 19 37117949 37117949 C T ZNF382 Nonsense_Mutation p.Q384* 0.12 TCGA-5L-AAT1-01 19 37464498 37464498 C T ZNF568 5'UTR 0.21 TCGA-5L-AAT1-01 19 38138724 38138724 G A ZFP30 5'UTR 0.14 TCGA-5L-AAT1-01 19 38378232 38378232 C T WDR87 Missense_Mutation p.E1988K 0.19 benign(0.235) TCGA-5L-AAT1-01 19 3964647 3964647 G A DAPK3 Silent p.I135I 0.19 TCGA-5L-AAT1-01 19 3980876 3980876 G C EEF2 Silent p.L371L 0.14 TCGA-5L-AAT1-01 19 39965169 39965169 G A SUPT5H Silent p.P945P 0.24 TCGA-5L-AAT1-01 19 39998510 39998510 C A DLL3 Missense_Mutation p.Q572K 0.18 tolerated(0.29) benign(0) TCGA-5L-AAT1-01 19 40222038 40222038 G C CLC Silent p.V137V 0.16 TCGA-5L-AAT1-01 19 40909652 40909652 C T PRX Missense_Mutation p.E49K 0.20 tolerated(0.74) possibly_damaging(0.502) TCGA-5L-AAT1-01 19 41081966 41081966 G A SPTBN4 3'UTR 0.11 TCGA-5L-AAT1-01 19 41235141 41235141 G A ITPKC Silent p.L430L 0.22 TCGA-5L-AAT1-01 19 43244645 43244645 C T PSG3 5'UTR 0.16 TCGA-5L-AAT1-01 19 43411785 43411785 C T PSG6 Missense_Mutation p.E310K 0.17 tolerated(0.29) probably_damaging(0.936) TCGA-5L-AAT1-01 19 43762095 43762095 C A PSG9 Intron 0.07 TCGA-5L-AAT1-01 19 44131375 44131375 A C CADM4 Missense_Mutation p.F103V 0.15 tolerated(0.46) benign(0.025) TCGA-5L-AAT1-01 19 44536952 44536952 G C ZNF222 Silent p.G415G 0.15 TCGA-5L-AAT1-01 19 44635431 44635431 C T ZNF225 Missense_Mutation p.H222Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 19 45392038 45392038 G C PVRL2 3'UTR 0.07 TCGA-5L-AAT1-01 19 45452032 45452032 C G APOC2 Missense_Mutation p.L44V 0.21 tolerated(0.06) benign(0.377) TCGA-5L-AAT1-01 19 45567633 45567633 C T CLASRP Missense_Mutation p.S385F 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-5L-AAT1-01 19 45766382 45766382 G C MARK4 Missense_Mutation p.K88N 0.15 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 19 45766389 45766389 G A MARK4 Missense_Mutation p.D91N 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-5L-AAT1-01 19 45768141 45768141 G C MARK4 Missense_Mutation p.E155D 0.11 deleterious(0.01) benign(0.012) TCGA-5L-AAT1-01 19 46807177 46807177 G A HIF3A Missense_Mutation p.E17K 0.25 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 19 47492862 47492862 G C ARHGAP35 Missense_Mutation p.K1322N 0.05 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 19 49004609 49004609 G A LMTK3 Missense_Mutation p.A340V 0.23 probably_damaging(0.999) TCGA-5L-AAT1-01 19 49147695 49147695 C A CA11 Nonsense_Mutation p.G92* 0.15 TCGA-5L-AAT1-01 19 49183892 49183892 C T RN7SL345P 5'Flank 0.14 TCGA-5L-AAT1-01 19 50161876 50161876 C T SCAF1 3'UTR 0.14 TCGA-5L-AAT1-01 19 50168075 50168075 C T IRF3 Silent p.R7R 0.21 TCGA-5L-AAT1-01 19 50180537 50180537 G C PRMT1 5'UTR 0.21 TCGA-5L-AAT1-01 19 51639332 51639332 C T SIGLEC9 Silent p.F439F 0.13 TCGA-5L-AAT1-01 19 52130854 52130854 G C SIGLEC5 Missense_Mutation p.F381L 0.19 tolerated(0.42) benign(0.026) TCGA-5L-AAT1-01 19 53050810 53050810 G A ZNF808 Missense_Mutation p.E37K 0.17 deleterious(0) probably_damaging(0.973) TCGA-5L-AAT1-01 19 53518609 53518609 G C ERVV-1 Missense_Mutation p.K422N 0.11 deleterious(0.01) possibly_damaging(0.481) TCGA-5L-AAT1-01 19 53958393 53958393 G C ZNF761 RNA 0.16 TCGA-5L-AAT1-01 19 54188266 54188266 C T MIR515-2 RNA 0.17 TCGA-5L-AAT1-01 19 54234299 54234299 C G MIR518A1 RNA 0.19 TCGA-5L-AAT1-01 19 54297258 54297258 C G NLRP12 3'UTR 0.17 TCGA-5L-AAT1-01 19 54409619 54409619 G A PRKCG Missense_Mutation p.E605K 0.16 deleterious(0.04) benign(0.437) TCGA-5L-AAT1-01 19 55859254 55859254 C T SUV420H2 3'UTR 0.19 TCGA-5L-AAT1-01 19 5678652 5678652 C T C19orf70 Missense_Mutation p.M89I 0.06 tolerated(0.57) benign(0.001) TCGA-5L-AAT1-01 19 56954002 56954002 C A ZNF667 Missense_Mutation p.R121L 0.20 tolerated(0.27) benign(0.084) TCGA-5L-AAT1-01 19 57773112 57773112 C T CTC-444N24.8 RNA 0.19 TCGA-5L-AAT1-01 19 58063964 58063964 G T ZNF550 Intron 0.19 TCGA-5L-AAT1-01 19 58549483 58549483 G C ZSCAN1 Missense_Mutation p.K93N 0.24 deleterious(0.01) possibly_damaging(0.856) TCGA-5L-AAT1-01 19 58904809 58904809 G A RPS5 Silent p.V134V 0.20 TCGA-5L-AAT1-01 19 58967130 58967130 C T ZNF324B Silent p.L273L 0.19 TCGA-5L-AAT1-01 19 6426445 6426445 G AA SLC25A41 Frame_Shift_Ins p.S357* 0.23 TCGA-5L-AAT1-01 19 6736626 6736626 C A GPR108 Nonsense_Mutation p.E73* 0.13 TCGA-5L-AAT1-01 19 7584965 7584965 C G ZNF358 Silent p.L279L 0.14 TCGA-5L-AAT1-01 19 7585539 7585539 C G ZNF358 Missense_Mutation p.L471V 0.23 deleterious_low_confidence(0.05) benign(0.036) TCGA-5L-AAT1-01 19 7585606 7585606 C A ZNF358 Missense_Mutation p.S493Y 0.14 tolerated_low_confidence(0.06) benign(0.002) TCGA-5L-AAT1-01 19 7677188 7677188 C G CAMSAP3 Silent p.L630L 0.11 TCGA-5L-AAT1-01 19 7709516 7709516 C T STXBP2 Missense_Mutation p.S375F 0.25 deleterious(0.04) possibly_damaging(0.526) TCGA-5L-AAT1-01 19 7986587 7986587 C G SNAPC2 Intron 0.17 TCGA-5L-AAT1-01 19 812045 812045 G A PTBP1 3'UTR 0.24 TCGA-5L-AAT1-01 19 9063580 9063580 C T MUC16 Missense_Mutation p.D7956N 0.15 unknown(0) TCGA-5L-AAT1-01 19 9073597 9073597 C T MUC16 Missense_Mutation p.E4617K 0.10 unknown(0) TCGA-5L-AAT1-01 19 9225812 9225812 G A OR7G1 Missense_Mutation p.P210S 0.24 tolerated(0.09) benign(0.39) TCGA-5L-AAT1-01 19 9226035 9226035 G A OR7G1 Silent p.L135L 0.25 TCGA-5L-AAT1-01 19 9492098 9492098 G C ZNF177 Missense_Mutation p.G364A 0.16 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 1 101196808 101196808 C G VCAM1 Missense_Mutation p.S420C 0.12 deleterious(0) possibly_damaging(0.447) TCGA-5L-AAT1-01 1 11015223 11015223 C G C1orf127 Missense_Mutation p.E267Q 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-5L-AAT1-01 1 111060842 111060842 C T KCNA10 Missense_Mutation p.E190K 0.17 tolerated(0.08) benign(0.003) TCGA-5L-AAT1-01 1 1115131 1115131 G C TTLL10 Intron 0.07 TCGA-5L-AAT1-01 1 112247007 112247007 G A RAP1A Missense_Mutation p.E123K 0.13 deleterious(0.03) benign(0.141) TCGA-5L-AAT1-01 1 113252828 113252828 G C PPM1J Missense_Mutation p.S492C 0.13 deleterious(0) probably_damaging(0.979) TCGA-5L-AAT1-01 1 113933732 113933732 C T MAGI3 Missense_Mutation p.P26L 0.15 tolerated(0.34) benign(0.245) TCGA-5L-AAT1-01 1 114189165 114189165 C A MAGI3 Missense_Mutation p.Q686K 0.14 deleterious(0.04) possibly_damaging(0.64) TCGA-5L-AAT1-01 1 114308506 114308506 G C RSBN1 3'UTR 0.34 TCGA-5L-AAT1-01 1 114437915 114437915 C G AP4B1 Silent p.V664V 0.15 TCGA-5L-AAT1-01 1 114454691 114454691 C G DCLRE1B Missense_Mutation p.L493V 0.19 tolerated_low_confidence(0.07) benign(0.037) TCGA-5L-AAT1-01 1 114640500 114640500 C T SYT6 Splice_Site p.X370_splice 0.22 TCGA-5L-AAT1-01 1 117753454 117753454 G T VTCN1 Silent p.L8L 0.20 TCGA-5L-AAT1-01 1 118693883 118693883 C T SPAG17 Missense_Mutation p.S66N 0.17 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 1 120927040 120927040 C A FCGR1B 3'UTR 0.07 TCGA-5L-AAT1-01 1 1216802 1216802 C A SCNN1D Nonsense_Mutation p.S30* 0.15 TCGA-5L-AAT1-01 1 1217650 1217650 C T SCNN1D Silent p.L102L 0.14 TCGA-5L-AAT1-01 1 1249268 1249268 G A CPSF3L Silent p.F273F 0.15 TCGA-5L-AAT1-01 1 13802213 13802213 G A LRRC38 3'UTR 0.13 TCGA-5L-AAT1-01 1 144821918 144821918 C T NBPF9 Intron 0.11 TCGA-5L-AAT1-01 1 144886255 144886255 C T PDE4DIP Silent p.P993P 0.07 TCGA-5L-AAT1-01 1 145296459 145296459 C T NBPF10 Silent p.L127L 0.08 TCGA-5L-AAT1-01 1 145537562 145537562 C T ITGA10 Nonsense_Mutation p.Q858* 0.26 TCGA-5L-AAT1-01 1 145580208 145580208 G C PIAS3 Missense_Mutation p.K230N 0.10 deleterious(0.02) probably_damaging(1) TCGA-5L-AAT1-01 1 145594980 145594980 C G POLR3C Missense_Mutation p.L446F 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-5L-AAT1-01 1 146638439 146638439 G A PRKAB2 Missense_Mutation p.H135Y 0.08 tolerated(0.13) probably_damaging(0.986) TCGA-5L-AAT1-01 1 146684031 146684031 C G FMO5 Missense_Mutation p.R187T 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-5L-AAT1-01 1 146684965 146684965 C T FMO5 Missense_Mutation p.E133K 0.18 tolerated(0.09) benign(0.41) TCGA-5L-AAT1-01 1 147083594 147083594 G A BCL9 5'UTR 0.11 TCGA-5L-AAT1-01 1 147095662 147095662 G A BCL9 Silent p.Q1061Q 0.18 TCGA-5L-AAT1-01 1 14925583 14925583 C G KAZN Silent p.L30L 0.16 TCGA-5L-AAT1-01 1 149763170 149763170 G T FCGR1A 3'UTR 0.13 TCGA-5L-AAT1-01 1 149784945 149784945 C A HIST2H3D Nonsense_Mutation p.E98* 0.09 TCGA-5L-AAT1-01 1 149858647 149858647 G A HIST2H2AC Silent p.A41A 0.20 TCGA-5L-AAT1-01 1 149982483 149982483 G A OTUD7B 5'UTR 0.16 TCGA-5L-AAT1-01 1 152276027 152276027 C G FLG Missense_Mutation p.D3779H 0.13 unknown(0) TCGA-5L-AAT1-01 1 154247432 154247432 G A HAX1 Missense_Mutation p.D171N 0.10 deleterious(0.01) probably_damaging(0.936) TCGA-5L-AAT1-01 1 154530750 154530750 G A UBE2Q1 Missense_Mutation p.R94W 0.20 deleterious(0) possibly_damaging(0.54) TCGA-5L-AAT1-01 1 154561091 154561091 C G ADAR Missense_Mutation p.E941Q 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-5L-AAT1-01 1 154575086 154575086 C A ADAR Missense_Mutation p.G11V 0.14 tolerated_low_confidence(0.09) benign(0.035) TCGA-5L-AAT1-01 1 154961004 154961004 G C FLAD1 Missense_Mutation p.E266Q 0.21 tolerated(0.19) benign(0.063) TCGA-5L-AAT1-01 1 155100398 155100398 G T EFNA1 5'UTR 0.07 TCGA-5L-AAT1-01 1 155188643 155188643 C A GBAP1 RNA 0.18 TCGA-5L-AAT1-01 1 155292649 155292649 C G RUSC1 Missense_Mutation p.S362W 0.14 deleterious_low_confidence(0) possibly_damaging(0.532) TCGA-5L-AAT1-01 1 155450339 155450339 G A ASH1L Silent p.F774F 0.15 TCGA-5L-AAT1-01 1 155584645 155584645 C T MSTO1 3'UTR 0.12 TCGA-5L-AAT1-01 1 155753847 155753847 C G GON4L Missense_Mutation p.D608H 0.07 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 1 155851080 155851080 C T SYT11 Silent p.F359F 0.10 TCGA-5L-AAT1-01 1 156044745 156044745 G C MEX3A 3'UTR 0.15 TCGA-5L-AAT1-01 1 156294783 156294783 G A CCT3 Silent p.I134I 0.12 TCGA-5L-AAT1-01 1 156347905 156347905 G C RHBG Missense_Mutation p.E167Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT1-01 1 156434228 156434228 C A MEF2D 3'UTR 0.10 TCGA-5L-AAT1-01 1 156535847 156535847 G A IQGAP3 Missense_Mutation p.S111F 0.13 tolerated(0.11) possibly_damaging(0.56) TCGA-5L-AAT1-01 1 156915948 156915948 C T ARHGEF11 Missense_Mutation p.E901K 0.16 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 1 157095113 157095113 C T ETV3 Silent p.R353R 0.19 TCGA-5L-AAT1-01 1 157545358 157545358 C G FCRL4 Missense_Mutation p.D502H 0.14 tolerated(0.07) possibly_damaging(0.62) TCGA-5L-AAT1-01 1 158323818 158323818 C A CD1E Missense_Mutation p.P14T 0.07 tolerated(0.43) possibly_damaging(0.526) TCGA-5L-AAT1-01 1 158389854 158389854 G A OR10K2 Missense_Mutation p.S268L 0.13 tolerated(0.6) possibly_damaging(0.497) TCGA-5L-AAT1-01 1 158585167 158585167 C A SPTA1 Missense_Mutation p.M2209I 0.10 tolerated(0.06) possibly_damaging(0.683) TCGA-5L-AAT1-01 1 158596650 158596650 C G SPTA1 Missense_Mutation p.D1938H 0.18 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 1 158612735 158612735 C T SPTA1 Missense_Mutation p.E1492K 0.25 tolerated(1) probably_damaging(0.999) TCGA-5L-AAT1-01 1 158687415 158687415 G T OR6K3 Missense_Mutation p.S164Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-5L-AAT1-01 1 159171081 159171081 G T CADM3 3'UTR 0.12 TCGA-5L-AAT1-01 1 15944118 15944118 C G DDI2 5'UTR 0.28 TCGA-5L-AAT1-01 1 160057371 160057371 G A KCNJ9 Missense_Mutation p.E316K 0.14 tolerated(0.52) probably_damaging(0.916) TCGA-5L-AAT1-01 1 160162644 160162644 C G CASQ1 Missense_Mutation p.S111C 0.15 deleterious(0.01) benign(0.146) TCGA-5L-AAT1-01 1 160209459 160209459 C T DCAF8 Intron 0.09 TCGA-5L-AAT1-01 1 160209475 160209475 C T DCAF8 Intron 0.11 TCGA-5L-AAT1-01 1 160264372 160264372 C T COPA Missense_Mutation p.E869K 0.13 tolerated(0.41) benign(0.005) TCGA-5L-AAT1-01 1 160389326 160389326 C T VANGL2 Nonsense_Mutation p.Q243* 0.16 TCGA-5L-AAT1-01 1 160389332 160389332 C T VANGL2 Nonsense_Mutation p.Q245* 0.14 TCGA-5L-AAT1-01 1 160455699 160455699 C T SLAMF6 3'UTR 0.06 TCGA-5L-AAT1-01 1 160535479 160535479 C G CD84 Missense_Mutation p.E35Q 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-5L-AAT1-01 1 161954788 161954788 G C OLFML2B Intron 0.15 TCGA-5L-AAT1-01 1 16260569 16260569 C T SPEN Missense_Mutation p.P2612S 0.16 probably_damaging(0.998) TCGA-5L-AAT1-01 1 16261277 16261277 C T SPEN Nonsense_Mutation p.Q2848* 0.16 TCGA-5L-AAT1-01 1 163122466 163122466 G A RGS5 Silent p.F86F 0.11 TCGA-5L-AAT1-01 1 16358750 16358750 C G CLCNKA Silent p.L603L 0.11 TCGA-5L-AAT1-01 1 1636442 1636442 C T CDK11A Silent p.R453R 0.19 TCGA-5L-AAT1-01 1 165389166 165389166 G A RXRG Missense_Mutation p.S128F 0.12 tolerated(0.46) possibly_damaging(0.855) TCGA-5L-AAT1-01 1 166818612 166818612 G A POGK Missense_Mutation p.V266M 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-5L-AAT1-01 1 166927264 166927264 G A ILDR2 Missense_Mutation p.R41C 0.17 deleterious(0.01) possibly_damaging(0.77) TCGA-5L-AAT1-01 1 167096701 167096701 C G DUSP27 Missense_Mutation p.S778C 0.24 deleterious(0.01) benign(0.02) TCGA-5L-AAT1-01 1 167887435 167887435 G A MPC2 3'UTR 0.15 TCGA-5L-AAT1-01 1 169101845 169101845 C G NME7 3'UTR 0.12 TCGA-5L-AAT1-01 1 16916404 16916404 C T NBPF1 Missense_Mutation p.E90K 0.05 deleterious(0.04) possibly_damaging(0.486) TCGA-5L-AAT1-01 1 169267874 169267874 C T NME7 Missense_Mutation p.E190K 0.16 tolerated(0.67) benign(0.032) TCGA-5L-AAT1-01 1 170135870 170135870 C T METTL11B Silent p.V186V 0.17 TCGA-5L-AAT1-01 1 170501390 170501390 C T GORAB Missense_Mutation p.S34F 0.12 deleterious(0) probably_damaging(0.971) TCGA-5L-AAT1-01 1 171810789 171810789 C T DNM3 5'UTR 0.18 TCGA-5L-AAT1-01 1 172501811 172501811 G T SUCO 5'Flank 0.14 TCGA-5L-AAT1-01 1 173457027 173457027 G A PRDX6 3'UTR 0.14 TCGA-5L-AAT1-01 1 173475997 173475997 G A SLC9C2 Nonsense_Mutation p.Q1075* 0.13 TCGA-5L-AAT1-01 1 173499107 173499107 G C SLC9C2 Missense_Mutation p.I750M 0.18 deleterious(0) possibly_damaging(0.472) TCGA-5L-AAT1-01 1 173808534 173808534 G A DARS2 Silent p.Q290Q 0.16 TCGA-5L-AAT1-01 1 176012397 176012397 C G RFWD2 Missense_Mutation p.E513Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-5L-AAT1-01 1 176085775 176085775 G T RFWD2 Missense_Mutation p.F337L 0.18 tolerated(0.33) benign(0.015) TCGA-5L-AAT1-01 1 179887575 179887575 G C TOR1AIP1 3'UTR 0.12 TCGA-5L-AAT1-01 1 181764019 181764019 C A CACNA1E Missense_Mutation p.S2016Y 0.13 deleterious(0.01) possibly_damaging(0.888) TCGA-5L-AAT1-01 1 181770362 181770362 G C CACNA1E 3'Flank 0.11 TCGA-5L-AAT1-01 1 182569422 182569422 G A RGS16 3'UTR 0.10 TCGA-5L-AAT1-01 1 182908463 182908463 C G SHCBP1L Missense_Mutation p.E308D 0.14 deleterious(0.04) probably_damaging(0.991) TCGA-5L-AAT1-01 1 183200122 183200122 G C LAMC2 Missense_Mutation p.E581Q 0.08 tolerated(0.23) benign(0.053) TCGA-5L-AAT1-01 1 186031063 186031063 G A HMCN1 Missense_Mutation p.E2465K 0.15 probably_damaging(0.996) TCGA-5L-AAT1-01 1 186946797 186946797 G C PLA2G4A Missense_Mutation p.D613H 0.05 deleterious(0) probably_damaging(0.992) TCGA-5L-AAT1-01 1 196874267 196874267 G T CFHR4 Nonsense_Mutation p.E95* 0.12 TCGA-5L-AAT1-01 1 197112508 197112508 C T ASPM Missense_Mutation p.E292K 0.15 tolerated(0.27) benign(0.004) TCGA-5L-AAT1-01 1 197890594 197890594 C T LHX9 Silent p.L180L 0.13 TCGA-5L-AAT1-01 1 200144530 200144530 G C NR5A2 3'UTR 0.18 TCGA-5L-AAT1-01 1 200860699 200860707 CCTCCGGGG - C1orf106 5'Flank 0.13 TCGA-5L-AAT1-01 1 201465390 201465390 C T CSRP1 Silent p.Q14Q 0.25 TCGA-5L-AAT1-01 1 201751891 201751891 G A NAV1 Missense_Mutation p.D751N 0.18 tolerated(0.07) possibly_damaging(0.678) TCGA-5L-AAT1-01 1 201980117 201980117 G A ELF3 5'UTR 0.11 TCGA-5L-AAT1-01 1 202127518 202127518 C G PTPN7 Intron 0.25 TCGA-5L-AAT1-01 1 202156157 202156157 C T PTPRVP Intron 0.14 TCGA-5L-AAT1-01 1 202278210 202278210 C T LGR6 Missense_Mutation p.P438S 0.20 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 1 202777455 202777455 G A KDM5B 5'UTR 0.12 TCGA-5L-AAT1-01 1 203689852 203689852 G C ATP2B4 Missense_Mutation p.G861A 0.27 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 1 204006237 204006237 G A LINC00303 Intron 0.20 TCGA-5L-AAT1-01 1 204228427 204228427 C T PLEKHA6 Silent p.V322V 0.15 TCGA-5L-AAT1-01 1 204391770 204391770 C G PIK3C2B 3'UTR 0.13 TCGA-5L-AAT1-01 1 204391946 204391946 C T PIK3C2B 3'UTR 0.14 TCGA-5L-AAT1-01 1 205495258 205495258 G C CDK18 Missense_Mutation p.E204D 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-5L-AAT1-01 1 206907163 206907163 C T MAPKAPK2 3'UTR 0.22 TCGA-5L-AAT1-01 1 207651410 207651410 G C CR2 Missense_Mutation p.R1028T 0.15 deleterious(0.01) benign(0.02) TCGA-5L-AAT1-01 1 207930461 207930461 G C CD46 Missense_Mutation p.G67A 0.10 tolerated(0.1) probably_damaging(0.984) TCGA-5L-AAT1-01 1 208216408 208216408 C T PLXNA2 Missense_Mutation p.E1339K 0.18 tolerated(0.1) probably_damaging(0.982) TCGA-5L-AAT1-01 1 209796484 209796484 G A LAMB3 Missense_Mutation p.S800L 0.16 tolerated(0.29) benign(0.001) TCGA-5L-AAT1-01 1 210014214 210014214 G C DIEXF Missense_Mutation p.Q433H 0.04 deleterious(0.01) possibly_damaging(0.832) TCGA-5L-AAT1-01 1 210415988 210415988 C G SERTAD4 3'UTR 0.10 TCGA-5L-AAT1-01 1 2113713 2113713 G A PRKCZ Intron 0.15 TCGA-5L-AAT1-01 1 211952318 211952318 C T LPGAT1 Missense_Mutation p.D266N 0.19 tolerated(0.08) benign(0.347) TCGA-5L-AAT1-01 1 212115429 212115429 C G INTS7 Missense_Mutation p.E876Q 0.27 tolerated(0.1) benign(0.439) TCGA-5L-AAT1-01 1 213189099 213189099 G T ANGEL2 5'UTR 0.14 TCGA-5L-AAT1-01 1 214814155 214814155 C T CENPF Missense_Mutation p.S825F 0.17 probably_damaging(0.982) TCGA-5L-AAT1-01 1 214819007 214819007 C G CENPF Missense_Mutation p.H2032D 0.09 possibly_damaging(0.463) TCGA-5L-AAT1-01 1 220101618 220101618 C T SLC30A10 Silent p.L55L 0.16 TCGA-5L-AAT1-01 1 22050731 22050731 G A USP48 Intron 0.22 TCGA-5L-AAT1-01 1 221875715 221875715 C G DUSP10 3'UTR 0.06 TCGA-5L-AAT1-01 1 22202746 22202746 G A HSPG2 Silent p.L993L 0.15 TCGA-5L-AAT1-01 1 222892273 222892273 G C BROX Missense_Mutation p.L36F 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-5L-AAT1-01 1 224463110 224463110 C T NVL Silent p.K671K 0.13 TCGA-5L-AAT1-01 1 225230626 225230626 G C DNAH14 Missense_Mutation p.E545D 0.12 tolerated(0.09) benign(0.001) TCGA-5L-AAT1-01 1 225445727 225445727 G A DNAH14 Missense_Mutation p.E2305K 0.09 possibly_damaging(0.677) TCGA-5L-AAT1-01 1 227213795 227213795 C G CDC42BPA Silent p.V1462V 0.15 TCGA-5L-AAT1-01 1 227838689 227838689 G A ZNF678 5'UTR 0.17 TCGA-5L-AAT1-01 1 228194824 228194824 G T WNT3A 5'UTR 0.14 TCGA-5L-AAT1-01 1 22839599 22839599 C T ZBTB40 Missense_Mutation p.H882Y 0.21 deleterious(0) benign(0.415) TCGA-5L-AAT1-01 1 22923901 22923901 G T EPHA8 Missense_Mutation p.R621L 0.21 tolerated(0.07) benign(0.046) TCGA-5L-AAT1-01 1 22929333 22929333 G A EPHA8 3'UTR 0.11 TCGA-5L-AAT1-01 1 229771268 229771268 C T URB2 Missense_Mutation p.S303L 0.12 deleterious(0) probably_damaging(0.996) TCGA-5L-AAT1-01 1 231349702 231349702 C T TRIM67 Silent p.L755L 0.17 TCGA-5L-AAT1-01 1 231408110 231408110 C T GNPAT Silent p.F525F 0.08 TCGA-5L-AAT1-01 1 231469662 231469662 G T EXOC8 3'UTR 0.19 TCGA-5L-AAT1-01 1 231509826 231509826 G A EGLN1 Missense_Mutation p.P304L 0.17 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 1 232626695 232626695 C G SIPA1L2 Silent p.L577L 0.11 TCGA-5L-AAT1-01 1 232940704 232940704 G A MAP10 5'UTR 0.16 TCGA-5L-AAT1-01 1 233750094 233750094 G T KCNK1 Silent p.L59L 0.14 TCGA-5L-AAT1-01 1 233802390 233802390 C G KCNK1 Missense_Mutation p.I135M 0.17 deleterious(0) possibly_damaging(0.907) TCGA-5L-AAT1-01 1 235377283 235377283 C T ARID4B Missense_Mutation p.E548K 0.14 deleterious(0.03) benign(0.438) TCGA-5L-AAT1-01 1 235973293 235973293 C G LYST Missense_Mutation p.L275F 0.16 deleterious(0.02) probably_damaging(0.975) TCGA-5L-AAT1-01 1 237774266 237774266 C T RYR2 Missense_Mutation p.L1630F 0.13 probably_damaging(0.972) TCGA-5L-AAT1-01 1 238644553 238644553 A G LINC01139 RNA 0.15 TCGA-5L-AAT1-01 1 240492766 240492766 G C FMN2 Missense_Mutation p.E1479Q 0.07 possibly_damaging(0.505) TCGA-5L-AAT1-01 1 24172190 24172190 C T FUCA1 3'UTR 0.22 TCGA-5L-AAT1-01 1 24172593 24172593 C G FUCA1 Missense_Mutation p.E411Q 0.21 tolerated(0.21) benign(0.001) TCGA-5L-AAT1-01 1 242687522 242687522 C G PLD5 Missense_Mutation p.Q19H 0.15 tolerated_low_confidence(0.3) benign(0.265) TCGA-5L-AAT1-01 1 243801021 243801021 C G AKT3 Missense_Mutation p.L151F 0.12 deleterious(0) possibly_damaging(0.71) TCGA-5L-AAT1-01 1 2452736 2452736 C T PANK4 Missense_Mutation p.E76K 0.16 tolerated(0.54) possibly_damaging(0.542) TCGA-5L-AAT1-01 1 2458018 2458018 C G PANK4 Missense_Mutation p.E3D 0.19 tolerated_low_confidence(0.23) probably_damaging(0.978) TCGA-5L-AAT1-01 1 246704356 246704356 C G TFB2M Missense_Mutation p.D390H 0.19 deleterious(0) probably_damaging(0.985) TCGA-5L-AAT1-01 1 246704468 246704468 C T TFB2M Missense_Mutation p.M352I 0.13 deleterious(0.02) benign(0.229) TCGA-5L-AAT1-01 1 247492873 247492873 G A ZNF496 Missense_Mutation p.T3I 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-5L-AAT1-01 1 247752498 247752498 C G OR2G2 Silent p.L279L 0.13 TCGA-5L-AAT1-01 1 27056181 27056181 C T ARID1A Nonsense_Mutation p.Q393* 0.20 TCGA-5L-AAT1-01 1 27106223 27106223 C T ARID1A Missense_Mutation p.P1945L 0.17 possibly_damaging(0.48) TCGA-5L-AAT1-01 1 28315025 28315025 G A EYA3 Intron 0.16 TCGA-5L-AAT1-01 1 29064088 29064088 C T YTHDF2 Intron 0.15 TCGA-5L-AAT1-01 1 32538623 32538623 G A TMEM39B 5'UTR 0.24 TCGA-5L-AAT1-01 1 32688056 32688056 G C EIF3I Intron 0.19 TCGA-5L-AAT1-01 1 32689637 32689637 C T EIF3I Silent p.I33I 0.18 TCGA-5L-AAT1-01 1 32742299 32742299 G C LCK Missense_Mutation p.M292I 0.19 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 1 33145927 33145927 C G SYNC 3'Flank 0.21 TCGA-5L-AAT1-01 1 33328962 33328962 C T FNDC5 3'UTR 0.16 TCGA-5L-AAT1-01 1 3380122 3380122 G A ARHGEF16 Missense_Mutation p.M158I 0.10 tolerated(0.14) benign(0.008) TCGA-5L-AAT1-01 1 33945159 33945159 C T ZSCAN20 Silent p.I90I 0.17 TCGA-5L-AAT1-01 1 35653677 35653677 C T SFPQ Missense_Mutation p.R571Q 0.15 tolerated(0.07) possibly_damaging(0.602) TCGA-5L-AAT1-01 1 35886773 35886773 C G ZMYM4 3'UTR 0.16 TCGA-5L-AAT1-01 1 3599689 3599689 G T TP73 Missense_Mutation p.G44V 0.21 deleterious(0.03) benign(0.097) TCGA-5L-AAT1-01 1 36615088 36615088 G T TRAPPC3 5'Flank 0.07 TCGA-5L-AAT1-01 1 37499661 37499661 C T GRIK3 Missense_Mutation p.A17T 0.13 tolerated_low_confidence(0.95) benign(0.002) TCGA-5L-AAT1-01 1 39851241 39851241 C G MACF1 Missense_Mutation p.Q2600E 0.19 benign(0.004) TCGA-5L-AAT1-01 1 39913124 39913124 C T MACF1 Silent p.L4483L 0.12 TCGA-5L-AAT1-01 1 40538013 40538013 C T CAP1 3'UTR 0.26 TCGA-5L-AAT1-01 1 40701810 40701810 G A RLF Missense_Mutation p.C479Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 1 43316756 43316756 G A ZNF691 Missense_Mutation p.E74K 0.21 tolerated(0.61) benign(0.012) TCGA-5L-AAT1-01 1 43736265 43736265 C T TMEM125 5'UTR 0.18 TCGA-5L-AAT1-01 1 44064305 44064305 G A PTPRF Intron 0.24 TCGA-5L-AAT1-01 1 44086159 44086159 C G PTPRF Missense_Mutation p.S1758C 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-5L-AAT1-01 1 44686230 44686230 G C DMAP1 Splice_Site p.X449_splice 0.20 TCGA-5L-AAT1-01 1 50575515 50575515 C T ELAVL4 Intron 0.18 TCGA-5L-AAT1-01 1 50885239 50885239 C T DMRTA2 Missense_Mutation p.D243N 0.18 tolerated(0.11) possibly_damaging(0.821) TCGA-5L-AAT1-01 1 51831673 51831673 C T EPS15 Silent p.G716G 0.16 TCGA-5L-AAT1-01 1 52260496 52260496 C G NRD1 Missense_Mutation p.D947H 0.15 deleterious(0.02) benign(0.087) TCGA-5L-AAT1-01 1 52824747 52824747 C G CC2D1B Silent p.R403R 0.12 TCGA-5L-AAT1-01 1 53459234 53459234 C T SCP2 Intron 0.20 TCGA-5L-AAT1-01 1 53676627 53676627 C T CPT2 Silent p.I427I 0.21 TCGA-5L-AAT1-01 1 53723018 53723018 C A LRP8 Missense_Mutation p.E776D 0.16 tolerated(0.22) benign(0.183) TCGA-5L-AAT1-01 1 55077377 55077377 G A FAM151A Missense_Mutation p.S281L 0.22 tolerated(0.08) benign(0.052) TCGA-5L-AAT1-01 1 57480631 57480631 C T DAB1 Missense_Mutation p.D457N 0.09 tolerated(0.09) possibly_damaging(0.759) TCGA-5L-AAT1-01 1 62235056 62235056 C T INADL Silent p.I162I 0.18 TCGA-5L-AAT1-01 1 64014958 64014958 C G DLEU2L 5'UTR 0.19 TCGA-5L-AAT1-01 1 65157302 65157302 G C CACHD1 3'UTR 0.19 TCGA-5L-AAT1-01 1 65871805 65871805 C G DNAJC6 Nonsense_Mutation p.S827* 0.20 TCGA-5L-AAT1-01 1 6704689 6704689 C T DNAJC11 Silent p.K342K 0.31 TCGA-5L-AAT1-01 1 6705981 6705981 C T DNAJC11 Silent p.L254L 0.24 TCGA-5L-AAT1-01 1 70486752 70486752 G A LRRC7 Missense_Mutation p.M457I 0.05 deleterious(0.04) possibly_damaging(0.885) TCGA-5L-AAT1-01 1 70502135 70502135 G A LRRC7 Missense_Mutation p.D668N 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-5L-AAT1-01 1 71529553 71529553 C T ZRANB2 3'UTR 0.16 TCGA-5L-AAT1-01 1 74737282 74737282 G A FPGT-TNNI3K Missense_Mutation p.D226N 0.12 tolerated(0.32) possibly_damaging(0.841) TCGA-5L-AAT1-01 1 75681502 75681502 C G SLC44A5 Silent p.L555L 0.17 TCGA-5L-AAT1-01 1 78045293 78045293 G C ZZZ3 Silent p.L667L 0.11 TCGA-5L-AAT1-01 1 7806080 7806080 C G CAMTA1 Missense_Mutation p.L1516V 0.15 deleterious(0) probably_damaging(0.99) TCGA-5L-AAT1-01 1 78429791 78429791 G C FUBP1 Missense_Mutation p.Q333E 0.14 tolerated(0.54) benign(0.124) TCGA-5L-AAT1-01 1 86964325 86964325 C T CLCA1 Silent p.F728F 0.19 TCGA-5L-AAT1-01 1 89270553 89270553 G A PKN2 Missense_Mutation p.E484K 0.13 deleterious(0) probably_damaging(0.945) TCGA-5L-AAT1-01 1 89481070 89481070 G T GBP3 Missense_Mutation p.S73Y 0.19 deleterious(0) probably_damaging(0.976) TCGA-5L-AAT1-01 1 90178760 90178760 C T LRRC8C Nonsense_Mutation p.Q211* 0.16 TCGA-5L-AAT1-01 1 90475832 90475832 C A ZNF326 Silent p.L267L 0.13 TCGA-5L-AAT1-01 1 91178135 91178135 C T BARHL2 Missense_Mutation p.E300K 0.21 deleterious(0.01) unknown(0) TCGA-5L-AAT1-01 1 914742 914742 G A C1orf170 Silent p.L462L 0.24 TCGA-5L-AAT1-01 1 93299188 93299188 C T RPL5 Missense_Mutation p.R54C 0.17 tolerated(0.09) possibly_damaging(0.792) TCGA-5L-AAT1-01 1 9416392 9416392 C T SPSB1 Missense_Mutation p.R148W 0.23 deleterious(0) possibly_damaging(0.551) TCGA-5L-AAT1-01 1 976070 976070 C A AGRN Missense_Mutation p.F179L 0.13 deleterious(0) benign(0.153) TCGA-5L-AAT1-01 1 99774739 99774739 G C LPPR4 3'UTR 0.19 TCGA-5L-AAT1-01 20 10620080 10620080 G C JAG1 3'UTR 0.13 TCGA-5L-AAT1-01 20 11903826 11903826 C T BTBD3 Nonsense_Mutation p.Q361* 0.17 TCGA-5L-AAT1-01 20 18477821 18477821 G A RBBP9 5'UTR 0.21 TCGA-5L-AAT1-01 20 18477879 18477879 G T RBBP9 5'UTR 0.25 TCGA-5L-AAT1-01 20 18492915 18492915 C T SEC23B Nonsense_Mutation p.Q90* 0.21 TCGA-5L-AAT1-01 20 23351330 23351330 C A GZF1 3'UTR 0.24 TCGA-5L-AAT1-01 20 31189395 31189395 G A RP11-410N8.4 5'UTR 0.16 TCGA-5L-AAT1-01 20 31699250 31699250 G C BPIFB4 3'UTR 0.23 TCGA-5L-AAT1-01 20 35281628 35281628 C G NDRG3 3'UTR 0.17 TCGA-5L-AAT1-01 20 35422241 35422241 C T SOGA1 Missense_Mutation p.R1415H 0.10 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 20 36147475 36147475 G A BLCAP Silent p.L34L 0.17 TCGA-5L-AAT1-01 20 3678656 3678656 G C SIGLEC1 Silent p.L637L 0.17 TCGA-5L-AAT1-01 20 3804979 3804979 G C AP5S1 3'UTR 0.23 TCGA-5L-AAT1-01 20 39690037 39690037 C G TOP1 Missense_Mutation p.S21C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-5L-AAT1-01 20 40125954 40125954 G C CHD6 Intron 0.17 TCGA-5L-AAT1-01 20 43615911 43615911 G C STK4 Missense_Mutation p.D167H 0.16 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 20 43803602 43803602 C A PI3 Silent p.L13L 0.18 TCGA-5L-AAT1-01 20 44567740 44567740 C T PCIF1 Silent p.I34I 0.18 TCGA-5L-AAT1-01 20 44582456 44582456 C G ZNF335 Missense_Mutation p.E858D 0.19 deleterious(0.01) benign(0.207) TCGA-5L-AAT1-01 20 44672323 44672323 C A SLC12A5 Nonsense_Mutation p.S453* 0.09 TCGA-5L-AAT1-01 20 45085341 45085341 C T ZNF663P RNA 0.14 TCGA-5L-AAT1-01 20 45242297 45242297 G T SLC13A3 Nonsense_Mutation p.S60* 0.11 TCGA-5L-AAT1-01 20 47296273 47296273 G C PREX1 Missense_Mutation p.F485L 0.17 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 20 47862923 47862923 C T ZNFX1 3'UTR 0.16 TCGA-5L-AAT1-01 20 48122444 48122444 G C PTGIS 3'UTR 0.17 TCGA-5L-AAT1-01 20 48259002 48259002 C A B4GALT5 Intron 0.15 TCGA-5L-AAT1-01 20 49620589 49620589 C T KCNG1 Missense_Mutation p.R510K 0.24 tolerated_low_confidence(0.34) benign(0.003) TCGA-5L-AAT1-01 20 5100438 5100438 C G PCNA Missense_Mutation p.E3Q 0.16 deleterious(0.01) probably_damaging(0.974) TCGA-5L-AAT1-01 20 52184087 52184087 G A ZNF217 3'UTR 0.16 TCGA-5L-AAT1-01 20 55966800 55966800 G C RBM38 Missense_Mutation p.E55Q 0.19 tolerated(0.12) benign(0.344) TCGA-5L-AAT1-01 20 56179503 56179503 C T ZBP1 3'UTR 0.24 TCGA-5L-AAT1-01 20 57599624 57599624 T A TUBB1 Missense_Mutation p.V381D 0.18 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-5L-AAT1-01 20 57829334 57829334 C G ZNF831 Missense_Mutation p.L1524V 0.17 tolerated(0.09) benign(0.11) TCGA-5L-AAT1-01 20 58521554 58521554 G A FAM217B 3'UTR 0.14 TCGA-5L-AAT1-01 20 60508081 60508081 G A CDH4 Missense_Mutation p.E760K 0.27 tolerated(0.22) benign(0.026) TCGA-5L-AAT1-01 20 60869657 60869657 G C OSBPL2 3'UTR 0.21 TCGA-5L-AAT1-01 20 61143957 61143957 C G C20orf166 5'Flank 0.22 TCGA-5L-AAT1-01 20 61386048 61386048 C G NTSR1 Missense_Mutation p.F242L 0.17 tolerated(1) benign(0.058) TCGA-5L-AAT1-01 20 61477335 61477335 C G TCFL5 Intron 0.17 TCGA-5L-AAT1-01 20 61981486 61981486 G C CHRNA4 Missense_Mutation p.S426C 0.23 tolerated(0.07) probably_damaging(0.913) TCGA-5L-AAT1-01 20 62272750 62272750 C A STMN3 Nonsense_Mutation p.E162* 0.20 TCGA-5L-AAT1-01 21 28212055 28212055 C T ADAMTS1 Missense_Mutation p.E627K 0.25 deleterious(0.01) benign(0.018) TCGA-5L-AAT1-01 21 30359226 30359226 G T LTN1 Silent p.L70L 0.20 TCGA-5L-AAT1-01 21 31709680 31709680 C G KRTAP27-1 Missense_Mutation p.E103Q 0.09 tolerated(0.65) benign(0.03) TCGA-5L-AAT1-01 21 34632948 34632948 G C IFNAR2 Missense_Mutation p.L252F 0.18 tolerated(0.13) benign(0.002) TCGA-5L-AAT1-01 21 35254570 35254570 C T ITSN1 Silent p.T1455T 0.17 TCGA-5L-AAT1-01 21 35478528 35478528 C A SLC5A3 3'UTR 0.09 TCGA-5L-AAT1-01 21 42824739 42824739 C T MX1 Silent p.S567S 0.20 TCGA-5L-AAT1-01 21 43539249 43539249 G T UMODL1 Missense_Mutation p.C963F 0.21 tolerated(0.36) possibly_damaging(0.506) TCGA-5L-AAT1-01 21 44430240 44430240 C T PKNOX1 Missense_Mutation p.S86F 0.21 deleterious(0) probably_damaging(0.996) TCGA-5L-AAT1-01 21 44478297 44478297 C T CBS Silent p.P475P 0.30 TCGA-5L-AAT1-01 21 44839256 44839256 C G SIK1 Missense_Mutation p.E408Q 0.22 tolerated(0.2) benign(0.107) TCGA-5L-AAT1-01 21 45993777 45993777 G A KRTAP10-4 Missense_Mutation p.A48T 0.19 tolerated(0.27) benign(0.137) TCGA-5L-AAT1-01 21 47746474 47746474 G T PCNT Missense_Mutation p.D80Y 0.10 probably_damaging(0.953) TCGA-5L-AAT1-01 22 17590747 17590747 G C IL17RA 3'UTR 0.25 TCGA-5L-AAT1-01 22 18028860 18028860 G C CECR2 Missense_Mutation p.E1274Q 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-5L-AAT1-01 22 18368766 18368766 G C MICAL3 Missense_Mutation p.L707V 0.12 benign(0.175) TCGA-5L-AAT1-01 22 18560827 18560827 C A PEX26 Intron 0.17 TCGA-5L-AAT1-01 22 18560848 18560848 G A PEX26 Intron 0.19 TCGA-5L-AAT1-01 22 18839063 18839063 C T AC008132.13 Intron 0.13 TCGA-5L-AAT1-01 22 20938697 20938697 G A MED15 Silent p.K596K 0.13 TCGA-5L-AAT1-01 22 21354707 21354707 C T THAP7 Missense_Mutation p.R131Q 0.14 tolerated(0.69) benign(0) TCGA-5L-AAT1-01 22 21538606 21538606 C T FAM230B RNA 0.08 TCGA-5L-AAT1-01 22 21824007 21824007 C A TMEM191C RNA 0.31 TCGA-5L-AAT1-01 22 22985258 22985258 C T GGTLC2 5'Flank 0.17 TCGA-5L-AAT1-01 22 22985300 22985300 C T GGTLC2 5'Flank 0.18 TCGA-5L-AAT1-01 22 23406223 23406223 G A RTDR1 Silent p.F170F 0.17 TCGA-5L-AAT1-01 22 24129223 24129223 G A SMARCB1 5'UTR 0.21 TCGA-5L-AAT1-01 22 24494104 24494104 G C CABIN1 Missense_Mutation p.D1356H 0.21 deleterious(0) probably_damaging(0.947) TCGA-5L-AAT1-01 22 24743053 24743053 G A SPECC1L Splice_Site p.X885_splice 0.14 TCGA-5L-AAT1-01 22 26299793 26299793 G C MYO18B Missense_Mutation p.E1715Q 0.14 tolerated(0.07) probably_damaging(0.91) TCGA-5L-AAT1-01 22 26849270 26849270 G A HPS4 Nonsense_Mutation p.Q686* 0.14 TCGA-5L-AAT1-01 22 27445848 27445848 G A CTA-992D9.6 RNA 0.09 TCGA-5L-AAT1-01 22 28395045 28395045 C T TTC28 Missense_Mutation p.M1534I 0.17 tolerated(0.08) benign(0.099) TCGA-5L-AAT1-01 22 29182777 29182777 G T CCDC117 3'UTR 0.25 TCGA-5L-AAT1-01 22 30163499 30163499 C T UQCR10 Nonsense_Mutation p.Q38* 0.10 TCGA-5L-AAT1-01 22 31302951 31302951 G A OSBP2 3'UTR 0.22 TCGA-5L-AAT1-01 22 31303013 31303013 G T OSBP2 3'UTR 0.21 TCGA-5L-AAT1-01 22 31303024 31303024 G A OSBP2 3'UTR 0.18 TCGA-5L-AAT1-01 22 31303320 31303320 G T OSBP2 3'UTR 0.17 TCGA-5L-AAT1-01 22 31494752 31494752 G C SMTN Missense_Mutation p.Q753H 0.18 deleterious(0) probably_damaging(0.973) TCGA-5L-AAT1-01 22 31644675 31644675 G C LIMK2 5'UTR 0.17 TCGA-5L-AAT1-01 22 35779216 35779216 C G HMOX1 Missense_Mutation p.F47L 0.10 deleterious(0.04) probably_damaging(0.969) TCGA-5L-AAT1-01 22 36710351 36710351 C G MYH9 Missense_Mutation p.E465Q 0.21 benign(0.149) TCGA-5L-AAT1-01 22 37196773 37196773 C G PVALB 3'UTR 0.17 TCGA-5L-AAT1-01 22 37213044 37213044 C G PVALB Silent p.S2S 0.17 TCGA-5L-AAT1-01 22 37898681 37898681 G C CARD10 Missense_Mutation p.S572C 0.19 deleterious(0) probably_damaging(0.969) TCGA-5L-AAT1-01 22 39082471 39082471 G A JOSD1 3'UTR 0.23 TCGA-5L-AAT1-01 22 39883441 39883441 C G MGAT3 Missense_Mutation p.S30C 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.907) TCGA-5L-AAT1-01 22 40084967 40084967 C A CACNA1I 3'UTR 0.20 TCGA-5L-AAT1-01 22 41923287 41923287 G C ACO2 Intron 0.29 TCGA-5L-AAT1-01 22 41923698 41923698 G A POLR3H 3'UTR 0.25 TCGA-5L-AAT1-01 22 41923699 41923699 G A POLR3H 3'UTR 0.26 TCGA-5L-AAT1-01 22 41923752 41923752 G A POLR3H 3'UTR 0.54 TCGA-5L-AAT1-01 22 41924202 41924202 G C POLR3H 3'UTR 0.21 TCGA-5L-AAT1-01 22 42092776 42092776 C G C22orf46 3'UTR 0.08 TCGA-5L-AAT1-01 22 42385595 42385595 C T SEPT3 Silent p.F192F 0.21 TCGA-5L-AAT1-01 22 42461852 42461852 C T NAGA Missense_Mutation p.D217N 0.19 deleterious(0) probably_damaging(0.93) TCGA-5L-AAT1-01 22 47087652 47087652 G A CERK Silent p.V383V 0.28 TCGA-5L-AAT1-01 22 50277197 50277197 G C ZBED4 5'UTR 0.11 TCGA-5L-AAT1-01 22 50277226 50277226 G A ZBED4 5'UTR 0.13 TCGA-5L-AAT1-01 22 50277252 50277252 G C ZBED4 5'UTR 0.15 TCGA-5L-AAT1-01 22 50277554 50277554 G A ZBED4 Missense_Mutation p.D82N 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-5L-AAT1-01 22 50277655 50277655 G A ZBED4 Silent p.R115R 0.14 TCGA-5L-AAT1-01 22 50553631 50553631 C T MOV10L1 Silent p.V405V 0.22 TCGA-5L-AAT1-01 22 50720469 50720469 G A PLXNB2 Silent p.V1053V 0.17 TCGA-5L-AAT1-01 22 51016269 51016269 C T CPT1B Missense_Mutation p.E26K 0.13 deleterious(0.03) possibly_damaging(0.806) TCGA-5L-AAT1-01 2 101097626 101097626 C T NMS Silent p.F137F 0.20 TCGA-5L-AAT1-01 2 101564694 101564694 C T NPAS2 Intron 0.19 TCGA-5L-AAT1-01 2 101565931 101565931 C G NPAS2 Missense_Mutation p.S196C 0.13 tolerated(0.14) probably_damaging(0.999) TCGA-5L-AAT1-01 2 101869743 101869743 C T CNOT11 Missense_Mutation p.S106L 0.38 tolerated(0.71) benign(0.028) TCGA-5L-AAT1-01 2 105473121 105473121 G A POU3F3 Missense_Mutation p.E385K 0.14 deleterious(0) possibly_damaging(0.776) TCGA-5L-AAT1-01 2 10580523 10580523 G C ODC1 3'UTR 0.21 TCGA-5L-AAT1-01 2 10829932 10829932 G A NOL10 Missense_Mutation p.S19F 0.17 deleterious(0) probably_damaging(0.99) TCGA-5L-AAT1-01 2 10917742 10917742 C T ATP6V1C2 Missense_Mutation p.S286L 0.10 deleterious_low_confidence(0.03) benign(0.011) TCGA-5L-AAT1-01 2 110303799 110303799 C T SEPT10 Missense_Mutation p.E393K 0.32 tolerated(0.09) benign(0.124) TCGA-5L-AAT1-01 2 112541950 112541950 C A ANAPC1 Nonsense_Mutation p.E1649* 0.16 TCGA-5L-AAT1-01 2 120672801 120672801 C T PTPN4 Nonsense_Mutation p.Q271* 0.17 TCGA-5L-AAT1-01 2 122120745 122120745 C T CLASP1 Intron 0.20 TCGA-5L-AAT1-01 2 122363379 122363379 G A CLASP1 Silent p.F31F 0.14 TCGA-5L-AAT1-01 2 124783235 124783235 C T CNTNAP5 Missense_Mutation p.S3F 0.20 deleterious_low_confidence(0.04) benign(0.011) TCGA-5L-AAT1-01 2 128036813 128036813 C T ERCC3 Missense_Mutation p.D556N 0.06 deleterious(0) probably_damaging(0.95) TCGA-5L-AAT1-01 2 128262493 128262493 G C IWS1 Nonsense_Mutation p.S329* 0.18 TCGA-5L-AAT1-01 2 128459909 128459909 G A WDR33 3'UTR 0.09 TCGA-5L-AAT1-01 2 128460676 128460676 G A WDR33 3'UTR 0.12 TCGA-5L-AAT1-01 2 128461859 128461859 G A WDR33 3'UTR 0.12 TCGA-5L-AAT1-01 2 128462148 128462148 G T WDR33 3'UTR 0.11 TCGA-5L-AAT1-01 2 128604704 128604704 G TA POLR2D 3'UTR 0.15 TCGA-5L-AAT1-01 2 128621778 128621778 G A AMMECR1L 3'UTR 0.20 TCGA-5L-AAT1-01 2 128622032 128622032 G A AMMECR1L 3'UTR 0.17 TCGA-5L-AAT1-01 2 128622755 128622755 G C AMMECR1L Missense_Mutation p.I282M 0.19 tolerated(0.61) benign(0.038) TCGA-5L-AAT1-01 2 130738614 130738614 G A RAB6C 3'UTR 0.08 TCGA-5L-AAT1-01 2 131486790 131486790 C T GPR148 Silent p.I22I 0.17 TCGA-5L-AAT1-01 2 135713761 135713761 G A CCNT2 3'UTR 0.04 TCGA-5L-AAT1-01 2 135714310 135714310 G A CCNT2 3'UTR 0.26 TCGA-5L-AAT1-01 2 135714495 135714495 G C CCNT2 3'UTR 0.16 TCGA-5L-AAT1-01 2 135744604 135744604 G C MAP3K19 Nonsense_Mutation p.S613* 0.15 TCGA-5L-AAT1-01 2 135965294 135965294 C A ZRANB3 Nonsense_Mutation p.E907* 0.30 TCGA-5L-AAT1-01 2 136542170 136542170 G A UBXN4 3'UTR 0.18 TCGA-5L-AAT1-01 2 136564736 136564736 C G LCT Missense_Mutation p.E1379Q 0.26 tolerated(0.2) benign(0.035) TCGA-5L-AAT1-01 2 136609134 136609134 C T MCM6 Splice_Site p.X586_splice 0.15 TCGA-5L-AAT1-01 2 137852642 137852642 G C THSD7B Missense_Mutation p.E384Q 0.20 tolerated(0.06) possibly_damaging(0.472) TCGA-5L-AAT1-01 2 137852669 137852669 G C THSD7B Missense_Mutation p.E393Q 0.24 tolerated(0.05) possibly_damaging(0.888) TCGA-5L-AAT1-01 2 141083370 141083370 C T LRP1B Missense_Mutation p.D4101N 0.16 possibly_damaging(0.539) TCGA-5L-AAT1-01 2 141707834 141707834 C G LRP1B Missense_Mutation p.D1036H 0.22 probably_damaging(0.995) TCGA-5L-AAT1-01 2 145147457 145147457 G A ZEB2 Missense_Mutation p.S1069L 0.16 deleterious(0) possibly_damaging(0.603) TCGA-5L-AAT1-01 2 145156927 145156927 C G ZEB2 Missense_Mutation p.E609D 0.24 tolerated(0.23) probably_damaging(0.992) TCGA-5L-AAT1-01 2 149402722 149402722 G T EPC2 Nonsense_Mutation p.E46* 0.18 TCGA-5L-AAT1-01 2 149679757 149679757 G C KIF5C Missense_Mutation p.E60Q 0.26 tolerated(0.07) benign(0.131) TCGA-5L-AAT1-01 2 150443723 150443723 G A MMADHC 5'UTR 0.19 TCGA-5L-AAT1-01 2 152350708 152350708 C G NEB Missense_Mutation p.Q8182H 0.23 benign(0.251) TCGA-5L-AAT1-01 2 152955177 152955177 C T CACNB4 Intron 0.09 TCGA-5L-AAT1-01 2 153575265 153575265 G A ARL6IP6 Missense_Mutation p.D43N 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-5L-AAT1-01 2 15519914 15519914 G A NBAS Silent p.N1134N 0.07 TCGA-5L-AAT1-01 2 16086106 16086106 G A MYCN Missense_Mutation p.E428K 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-5L-AAT1-01 2 163163358 163163358 C G IFIH1 Missense_Mutation p.E210D 0.14 tolerated(0.18) benign(0.004) TCGA-5L-AAT1-01 2 165548754 165548754 C T COBLL1 Missense_Mutation p.E1131K 0.24 deleterious(0) possibly_damaging(0.698) TCGA-5L-AAT1-01 2 166166932 166166932 G C SCN2A Missense_Mutation p.G266A 0.17 deleterious(0.04) probably_damaging(1) TCGA-5L-AAT1-01 2 166167000 166167000 G A SCN2A Missense_Mutation p.E289K 0.15 tolerated(0.22) benign(0.138) TCGA-5L-AAT1-01 2 166247057 166247057 G C SCN2A 3'UTR 0.12 TCGA-5L-AAT1-01 2 168099573 168099573 G C XIRP2 Silent p.L557L 0.24 TCGA-5L-AAT1-01 2 168106414 168106414 G A XIRP2 Missense_Mutation p.E2838K 0.21 possibly_damaging(0.641) TCGA-5L-AAT1-01 2 170012850 170012850 C G LRP2 Missense_Mutation p.E4029Q 0.17 possibly_damaging(0.461) TCGA-5L-AAT1-01 2 170131721 170131721 G C LRP2 Silent p.L600L 0.13 TCGA-5L-AAT1-01 2 170488323 170488323 C G PPIG Missense_Mutation p.S270C 0.16 deleterious(0.01) unknown(0) TCGA-5L-AAT1-01 2 171238557 171238557 C T MYO3B Missense_Mutation p.H335Y 0.16 tolerated(1) benign(0.001) TCGA-5L-AAT1-01 2 171641239 171641239 G A ERICH2 Missense_Mutation p.E38K 0.17 tolerated(0.15) benign(0.094) TCGA-5L-AAT1-01 2 174830008 174830008 G C SP3 5'UTR 0.19 TCGA-5L-AAT1-01 2 174830039 174830039 G A SP3 5'UTR 0.21 TCGA-5L-AAT1-01 2 175939356 175939356 G A ATF2 Missense_Mutation p.S500L 0.13 deleterious(0.01) benign(0.011) TCGA-5L-AAT1-01 2 177017439 177017439 G A HOXD4 Silent p.L179L 0.12 TCGA-5L-AAT1-01 2 178257732 178257732 C T AGPS Missense_Mutation p.T72M 0.21 tolerated(0.13) benign(0.197) TCGA-5L-AAT1-01 2 178576594 178576594 G C PDE11A Missense_Mutation p.Q686E 0.15 tolerated(0.21) possibly_damaging(0.848) TCGA-5L-AAT1-01 2 179395466 179395466 C T TTN Silent p.L35292L 0.14 TCGA-5L-AAT1-01 2 179396011 179396011 C G TTN Missense_Mutation p.E35111Q 0.11 TCGA-5L-AAT1-01 2 179414852 179414852 C T TTN Missense_Mutation p.M30571I 0.15 TCGA-5L-AAT1-01 2 179749743 179749743 G A CCDC141 Missense_Mutation p.S535L 0.16 tolerated(0.51) benign(0.012) TCGA-5L-AAT1-01 2 185803655 185803655 C T ZNF804A Missense_Mutation p.H1178Y 0.14 deleterious(0) probably_damaging(0.932) TCGA-5L-AAT1-01 2 18736811 18736811 C T RDH14 Silent p.R219R 0.21 TCGA-5L-AAT1-01 2 189405973 189405973 G T GULP1 Missense_Mutation p.R109S 0.18 deleterious(0) probably_damaging(0.969) TCGA-5L-AAT1-01 2 189405979 189405979 C A GULP1 Missense_Mutation p.F111L 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-5L-AAT1-01 2 190316612 190316612 G A WDR75 Missense_Mutation p.E122K 0.17 tolerated(0.65) benign(0.001) TCGA-5L-AAT1-01 2 191067369 191067369 C T C2orf88 3'UTR 0.17 TCGA-5L-AAT1-01 2 197597267 197597267 C T CCDC150 Missense_Mutation p.S1096F 0.09 deleterious(0) possibly_damaging(0.736) TCGA-5L-AAT1-01 2 197662607 197662607 G C GTF3C3 Nonsense_Mutation p.S43* 0.20 TCGA-5L-AAT1-01 2 202149852 202149852 G C CASP8 Missense_Mutation p.E431D 0.15 tolerated(0.07) benign(0.013) TCGA-5L-AAT1-01 2 202356084 202356084 G A ALS2CR11 Silent p.L1660L 0.24 TCGA-5L-AAT1-01 2 202955506 202955506 G A AC079354.1 Missense_Mutation p.R128K 0.16 tolerated(0.19) probably_damaging(0.969) TCGA-5L-AAT1-01 2 203881021 203881021 G A NBEAL1 5'UTR 0.18 TCGA-5L-AAT1-01 2 20647190 20647190 C G RHOB 5'UTR 0.14 TCGA-5L-AAT1-01 2 206869448 206869448 C T INO80D Missense_Mutation p.D910N 0.08 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-5L-AAT1-01 2 207024554 207024554 C A EEF1B2 5'UTR 0.22 TCGA-5L-AAT1-01 2 207610378 207610378 C G MDH1B Missense_Mutation p.G459A 0.18 deleterious(0.01) possibly_damaging(0.78) TCGA-5L-AAT1-01 2 208632931 208632931 G A FZD5 Missense_Mutation p.S178L 0.21 tolerated(0.36) benign(0.001) TCGA-5L-AAT1-01 2 209106791 209106791 C T IDH1 Missense_Mutation p.M259I 0.18 tolerated_low_confidence(0.22) benign(0.042) TCGA-5L-AAT1-01 2 209106819 209106819 A C IDH1 Missense_Mutation p.L250R 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-5L-AAT1-01 2 211518797 211518797 G C CPS1 Missense_Mutation p.E1183Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 2 213921648 213921648 G A IKZF2 Silent p.I105I 0.27 TCGA-5L-AAT1-01 2 218668314 218668314 G A TNS1 3'UTR 0.13 TCGA-5L-AAT1-01 2 219509255 219509255 C A ZNF142 Nonsense_Mutation p.E662* 0.16 TCGA-5L-AAT1-01 2 220079130 220079130 G A ABCB6 Missense_Mutation p.S456F 0.14 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 2 220331893 220331893 C T SPEG Intron 0.17 TCGA-5L-AAT1-01 2 222283932 222283932 C A EPHA4 3'UTR 0.23 TCGA-5L-AAT1-01 2 222290775 222290775 C G EPHA4 Missense_Mutation p.Q978H 0.14 tolerated(0.45) probably_damaging(0.948) TCGA-5L-AAT1-01 2 222428866 222428866 G A EPHA4 Silent p.F136F 0.18 TCGA-5L-AAT1-01 2 223423089 223423089 C T SGPP2 Silent p.I224I 0.19 TCGA-5L-AAT1-01 2 225400349 225400349 C T CUL3 Missense_Mutation p.D92N 0.21 tolerated(0.13) probably_damaging(0.924) TCGA-5L-AAT1-01 2 227729526 227729526 C G RHBDD1 Missense_Mutation p.I39M 0.25 deleterious(0) benign(0.066) TCGA-5L-AAT1-01 2 227915806 227915806 G A COL4A4 Missense_Mutation p.H1013Y 0.17 unknown(0) TCGA-5L-AAT1-01 2 228159727 228159727 G A COL4A3 Missense_Mutation p.D1156N 0.14 unknown(0) TCGA-5L-AAT1-01 2 228860224 228860224 C G SPHKAP Splice_Site p.X1545_splice 0.20 TCGA-5L-AAT1-01 2 230223003 230223003 G A DNER 3'UTR 0.12 TCGA-5L-AAT1-01 2 231108501 231108501 G C SP140 Missense_Mutation p.L182F 0.22 tolerated(0.05) possibly_damaging(0.903) TCGA-5L-AAT1-01 2 232573369 232573369 C G PTMA 5'UTR 0.16 TCGA-5L-AAT1-01 2 237489522 237489522 G T ACKR3 Missense_Mutation p.M138I 0.21 tolerated(0.05) probably_damaging(0.93) TCGA-5L-AAT1-01 2 238296342 238296342 C G COL6A3 Missense_Mutation p.V399L 0.09 benign(0.123) TCGA-5L-AAT1-01 2 239186370 239186370 C T PER2 Missense_Mutation p.E70K 0.24 tolerated(0.31) benign(0.164) TCGA-5L-AAT1-01 2 23985201 23985201 G C ATAD2B Nonsense_Mutation p.S1091* 0.17 TCGA-5L-AAT1-01 2 240056309 240056309 C T HDAC4 Missense_Mutation p.E337K 0.15 deleterious(0.01) benign(0.41) TCGA-5L-AAT1-01 2 241556808 241556808 G C GPR35 Intron 0.36 TCGA-5L-AAT1-01 2 24194204 24194204 G T UBXN2A Nonsense_Mutation p.E34* 0.18 TCGA-5L-AAT1-01 2 241988480 241988480 G C SNED1 Missense_Mutation p.D516H 0.21 tolerated(0.07) probably_damaging(0.993) TCGA-5L-AAT1-01 2 242007309 242007309 C G SNED1 Silent p.A1047A 0.17 TCGA-5L-AAT1-01 2 242012861 242012861 C - SNED1 Intron 0.15 TCGA-5L-AAT1-01 2 24252804 24252804 G T C2orf44 3'UTR 0.12 TCGA-5L-AAT1-01 2 24299156 24299156 C G SF3B14 5'UTR 0.13 TCGA-5L-AAT1-01 2 25016261 25016261 G A CENPO 5'UTR 0.09 TCGA-5L-AAT1-01 2 26411139 26411139 G C GAREML 3'UTR 0.21 TCGA-5L-AAT1-01 2 26683723 26683723 G T OTOF Silent p.L1903L 0.13 TCGA-5L-AAT1-01 2 26696943 26696943 G A OTOF Silent p.I1108I 0.15 TCGA-5L-AAT1-01 2 27001334 27001334 G A SLC35F6 Silent p.E357E 0.15 TCGA-5L-AAT1-01 2 27248576 27248576 G A MAPRE3 Missense_Mutation p.D199N 0.15 tolerated(0.16) benign(0.006) TCGA-5L-AAT1-01 2 27372021 27372021 G C TCF23 Missense_Mutation p.R7T 0.19 tolerated_low_confidence(0.23) benign(0.003) TCGA-5L-AAT1-01 2 27802767 27802767 C G C2orf16 Missense_Mutation p.L1110V 0.09 deleterious(0.05) possibly_damaging(0.858) TCGA-5L-AAT1-01 2 27802839 27802839 C G C2orf16 Missense_Mutation p.H1134D 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-5L-AAT1-01 2 31181310 31181310 G A GALNT14 Missense_Mutation p.T145M 0.09 tolerated(0.29) benign(0.004) TCGA-5L-AAT1-01 2 32727912 32727912 G A BIRC6 Silent p.L3086L 0.15 TCGA-5L-AAT1-01 2 3392391 3392391 G A TRAPPC12 Missense_Mutation p.V333M 0.30 tolerated(0.06) benign(0.097) TCGA-5L-AAT1-01 2 36776881 36776881 C G CRIM1 3'UTR 0.17 TCGA-5L-AAT1-01 2 37297486 37297486 C G HEATR5B Missense_Mutation p.E272Q 0.18 tolerated(0.3) benign(0.087) TCGA-5L-AAT1-01 2 38178835 38178835 C T RMDN2 Silent p.I159I 0.21 TCGA-5L-AAT1-01 2 38523831 38523831 C T ATL2 Intron 0.28 TCGA-5L-AAT1-01 2 40366799 40366799 C T SLC8A1 Missense_Mutation p.D763N 0.06 tolerated(0.1) benign(0.167) TCGA-5L-AAT1-01 2 42871337 42871337 G C MTA3 Missense_Mutation p.R151T 0.19 deleterious(0) probably_damaging(0.984) TCGA-5L-AAT1-01 2 42935140 42935140 G C MTA3 Missense_Mutation p.L416F 0.17 deleterious(0.03) possibly_damaging(0.659) TCGA-5L-AAT1-01 2 43933464 43933464 C G PLEKHH2 Missense_Mutation p.S577C 0.16 tolerated(0.08) benign(0.003) TCGA-5L-AAT1-01 2 43980769 43980769 C T PLEKHH2 Missense_Mutation p.S1222L 0.20 deleterious(0.01) benign(0.066) TCGA-5L-AAT1-01 2 44503067 44503067 C G SLC3A1 Missense_Mutation p.F131L 0.09 deleterious(0) probably_damaging(0.94) TCGA-5L-AAT1-01 2 48010560 48010560 C T MSH6 Missense_Mutation p.S63F 0.20 tolerated(0.06) benign(0.379) TCGA-5L-AAT1-01 2 48046123 48046123 C G FBXO11 Missense_Mutation p.R631T 0.27 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 2 48808865 48808865 G A STON1-GTF2A1L Missense_Mutation p.E365K 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-5L-AAT1-01 2 48809196 48809196 C G STON1-GTF2A1L Nonsense_Mutation p.S475* 0.22 TCGA-5L-AAT1-01 2 54871513 54871513 G A SPTBN1 Silent p.E1353E 0.17 TCGA-5L-AAT1-01 2 55143947 55143947 G A EML6 Missense_Mutation p.E1184K 0.23 tolerated(0.12) possibly_damaging(0.77) TCGA-5L-AAT1-01 2 55436766 55436766 C T CLHC1 Missense_Mutation p.C234Y 0.15 tolerated(0.18) benign(0.058) TCGA-5L-AAT1-01 2 55473538 55473538 C T MTIF2 Silent p.L347L 0.17 TCGA-5L-AAT1-01 2 55549826 55549826 C A CCDC88A Silent p.V999V 0.21 TCGA-5L-AAT1-01 2 61233702 61233702 G A PUS10 Missense_Mutation p.S153F 0.23 tolerated(0.27) benign(0.272) TCGA-5L-AAT1-01 2 61473541 61473541 G C USP34 Missense_Mutation p.H2156D 0.16 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 2 62998504 62998504 G C EHBP1 Missense_Mutation p.E97Q 0.27 deleterious(0) probably_damaging(0.976) TCGA-5L-AAT1-01 2 64682529 64682529 G A LGALSL Missense_Mutation p.D30N 0.17 deleterious(0.03) benign(0.031) TCGA-5L-AAT1-01 2 65216602 65216602 C A SLC1A4 5'UTR 0.15 TCGA-5L-AAT1-01 2 66796072 66796072 C T MEIS1 Intron 0.16 TCGA-5L-AAT1-01 2 68407427 68407427 G A PPP3R1 3'UTR 0.18 TCGA-5L-AAT1-01 2 69204822 69204822 G A GKN1 Silent p.V54V 0.21 TCGA-5L-AAT1-01 2 71681134 71681134 G A DYSF Silent p.L2L 0.18 TCGA-5L-AAT1-01 2 74594226 74594226 C G DCTN1 Missense_Mutation p.Q754H 0.19 tolerated(0.13) probably_damaging(0.971) TCGA-5L-AAT1-01 2 74595961 74595961 C T DCTN1 Missense_Mutation p.R583Q 0.16 tolerated(0.27) possibly_damaging(0.889) TCGA-5L-AAT1-01 2 74596519 74596519 C T DCTN1 Missense_Mutation p.E498K 0.26 deleterious(0.01) possibly_damaging(0.885) TCGA-5L-AAT1-01 2 74909024 74909024 C T SEMA4F 3'UTR 0.18 TCGA-5L-AAT1-01 2 75185797 75185797 C G POLE4 5'UTR 0.20 TCGA-5L-AAT1-01 2 75185939 75185939 C T POLE4 Nonsense_Mutation p.R45* 0.22 TCGA-5L-AAT1-01 2 84668567 84668567 C A SUCLG1 Missense_Mutation p.G112V 0.19 deleterious(0) probably_damaging(0.977) TCGA-5L-AAT1-01 2 84912480 84912480 G A DNAH6 Missense_Mutation p.R2316K 0.19 tolerated(0.24) benign(0.101) TCGA-5L-AAT1-01 2 85097853 85097853 G C TRABD2A Missense_Mutation p.F55L 0.09 tolerated(0.69) benign(0.334) TCGA-5L-AAT1-01 2 85570403 85570403 G C RETSAT Missense_Mutation p.L599V 0.07 deleterious(0) possibly_damaging(0.829) TCGA-5L-AAT1-01 2 86378623 86378623 C A IMMT Missense_Mutation p.D400Y 0.20 deleterious(0) probably_damaging(0.989) TCGA-5L-AAT1-01 2 86437756 86437756 C T MRPL35 Nonsense_Mutation p.Q178* 0.22 TCGA-5L-AAT1-01 2 86441217 86441217 C T REEP1 3'UTR 0.17 TCGA-5L-AAT1-01 2 88333773 88333773 C A KRCC1 5'UTR 0.09 TCGA-5L-AAT1-01 2 96523081 96523081 C G ANKRD36C Missense_Mutation p.K379N 0.04 deleterious(0) benign(0.07) TCGA-5L-AAT1-01 2 96919431 96919431 G A TMEM127 3'UTR 0.19 TCGA-5L-AAT1-01 2 98206233 98206233 C T ANKRD36B RNA 0.07 TCGA-5L-AAT1-01 2 98206240 98206240 C T ANKRD36B RNA 0.16 TCGA-5L-AAT1-01 2 98206243 98206243 C G ANKRD36B RNA 0.23 TCGA-5L-AAT1-01 3 100451391 100451391 C T TFG Missense_Mutation p.S152F 0.21 tolerated(0.07) benign(0.005) TCGA-5L-AAT1-01 3 10089628 10089628 C G FANCD2 Missense_Mutation p.L436V 0.05 deleterious(0) probably_damaging(0.984) TCGA-5L-AAT1-01 3 10443911 10443911 C T ATP2B2 Nonsense_Mutation p.W173* 0.10 TCGA-5L-AAT1-01 3 107447736 107447736 C G BBX Missense_Mutation p.S177C 0.06 deleterious(0) possibly_damaging(0.759) TCGA-5L-AAT1-01 3 108076835 108076835 C T HHLA2 Missense_Mutation p.S277F 0.12 deleterious(0) possibly_damaging(0.535) TCGA-5L-AAT1-01 3 108178288 108178288 C T MYH15 Silent p.L667L 0.18 TCGA-5L-AAT1-01 3 108626722 108626722 C G GUCA1C 3'UTR 0.16 TCGA-5L-AAT1-01 3 110866254 110866254 G C PVRL3 Missense_Mutation p.D382H 0.11 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 3 11304296 11304296 C T HRH1 3'UTR 0.14 TCGA-5L-AAT1-01 3 11304306 11304306 C T HRH1 3'UTR 0.10 TCGA-5L-AAT1-01 3 113077629 113077629 C G WDR52 Missense_Mutation p.E1010Q 0.13 tolerated(0.09) benign(0.425) TCGA-5L-AAT1-01 3 1134660 1134660 C T CNTN6 5'UTR 0.21 TCGA-5L-AAT1-01 3 119120857 119120857 C A ARHGAP31 Missense_Mutation p.L420I 0.23 tolerated(0.4) benign(0.219) TCGA-5L-AAT1-01 3 119232510 119232510 G A TIMMDC1 Silent p.R180R 0.17 TCGA-5L-AAT1-01 3 119306666 119306666 G C ADPRH Missense_Mutation p.E339Q 0.18 tolerated(0.46) benign(0.001) TCGA-5L-AAT1-01 3 121366240 121366240 C A HCLS1 Nonsense_Mutation p.E72* 0.19 TCGA-5L-AAT1-01 3 121415004 121415004 C T GOLGB1 Missense_Mutation p.D1456N 0.23 benign(0.015) TCGA-5L-AAT1-01 3 122354929 122354929 C G PARP15 Silent p.L673L 0.16 TCGA-5L-AAT1-01 3 122865021 122865021 C T PDIA5 Missense_Mutation p.P353S 0.12 deleterious(0) probably_damaging(0.938) TCGA-5L-AAT1-01 3 123471188 123471188 C G MYLK Missense_Mutation p.L121F 0.18 deleterious(0) possibly_damaging(0.604) TCGA-5L-AAT1-01 3 123680132 123680132 C T CCDC14 Silent p.R11R 0.16 TCGA-5L-AAT1-01 3 124207135 124207135 G A KALRN Missense_Mutation p.D1455N 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-5L-AAT1-01 3 124746248 124746248 C T HEG1 Silent p.R238R 0.06 TCGA-5L-AAT1-01 3 125727630 125727630 G T SLC41A3 Nonsense_Mutation p.S400* 0.21 TCGA-5L-AAT1-01 3 12623857 12623857 G C MKRN2 3'UTR 0.17 TCGA-5L-AAT1-01 3 126753622 126753622 C G PLXNA1 3'UTR 0.18 TCGA-5L-AAT1-01 3 127783838 127783838 C G SEC61A1 Silent p.L245L 0.13 TCGA-5L-AAT1-01 3 128664087 128664087 G C RP11-723O4.6 Silent p.V241V 0.19 TCGA-5L-AAT1-01 3 13008894 13008894 C T IQSEC1 Missense_Mutation p.D20N 0.38 tolerated_low_confidence(0.24) benign(0) TCGA-5L-AAT1-01 3 130613393 130613393 C T ATP2C1 Intron 0.15 TCGA-5L-AAT1-01 3 132175662 132175662 C T DNAJC13 Silent p.F445F 0.21 TCGA-5L-AAT1-01 3 132394183 132394183 C T UBA5 Nonsense_Mutation p.Q302* 0.18 TCGA-5L-AAT1-01 3 133191362 133191362 G A BFSP2 Silent p.Q399Q 0.16 TCGA-5L-AAT1-01 3 13383531 13383531 C T NUP210 Silent p.L1019L 0.21 TCGA-5L-AAT1-01 3 138014894 138014894 G C ARMC8 3'UTR 0.24 TCGA-5L-AAT1-01 3 14187587 14187587 G C XPC Missense_Mutation p.Q893E 0.12 tolerated(0.38) benign(0.013) TCGA-5L-AAT1-01 3 14724679 14724679 G A C3orf20 Missense_Mutation p.M153I 0.17 deleterious(0.01) possibly_damaging(0.853) TCGA-5L-AAT1-01 3 148759409 148759409 C T HLTF Missense_Mutation p.M748I 0.20 tolerated(0.23) benign(0.047) TCGA-5L-AAT1-01 3 148759412 148759412 C T HLTF Silent p.K747K 0.19 TCGA-5L-AAT1-01 3 148872904 148872904 G C HPS3 Missense_Mutation p.D471H 0.14 tolerated(0.15) probably_damaging(0.996) TCGA-5L-AAT1-01 3 150264798 150264798 C T SERP1 5'UTR 0.16 TCGA-5L-AAT1-01 3 150459620 150459620 C G SIAH2 3'UTR 0.22 TCGA-5L-AAT1-01 3 151046555 151046555 G A P2RY13 Missense_Mutation p.P97S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT1-01 3 154834694 154834694 G A MME Silent p.L191L 0.21 TCGA-5L-AAT1-01 3 154864984 154864984 G C MME Missense_Mutation p.D490H 0.20 tolerated(0.06) benign(0.191) TCGA-5L-AAT1-01 3 155198941 155198941 G C PLCH1 Missense_Mutation p.S1633C 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-5L-AAT1-01 3 155200078 155200078 G A PLCH1 Missense_Mutation p.S1254L 0.19 deleterious_low_confidence(0.04) benign(0.033) TCGA-5L-AAT1-01 3 155200249 155200249 G C PLCH1 Nonsense_Mutation p.S1197* 0.12 TCGA-5L-AAT1-01 3 15686929 15686929 G T BTD Missense_Mutation p.R522S 0.14 tolerated(1) benign(0.003) TCGA-5L-AAT1-01 3 15719038 15719038 C G ANKRD28 Silent p.L883L 0.24 TCGA-5L-AAT1-01 3 158289136 158289136 C T MLF1 Intron 0.21 TCGA-5L-AAT1-01 3 158460170 158460170 C T RP11-379F4.4 RNA 0.16 TCGA-5L-AAT1-01 3 161063918 161063918 G C SPTSSB Nonsense_Mutation p.S65* 0.21 TCGA-5L-AAT1-01 3 168834237 168834237 G A MECOM Missense_Mutation p.H352Y 0.25 tolerated(0.08) probably_damaging(0.998) TCGA-5L-AAT1-01 3 169492177 169492177 G A MYNN Missense_Mutation p.E32K 0.06 tolerated(0.15) benign(0.38) TCGA-5L-AAT1-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-5L-AAT1-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.18 deleterious(0.04) probably_damaging(0.96) TCGA-5L-AAT1-01 3 179474891 179474891 C T USP13 Intron 0.22 TCGA-5L-AAT1-01 3 180334348 180334348 C T CCDC39 Missense_Mutation p.E848K 0.17 tolerated(0.59) benign(0.015) TCGA-5L-AAT1-01 3 181417566 181417566 G A SOX2-OT RNA 0.18 TCGA-5L-AAT1-01 3 182636585 182636585 C G ATP11B 3'UTR 0.12 TCGA-5L-AAT1-01 3 183853060 183853060 C T EIF2B5 5'UTR 0.10 TCGA-5L-AAT1-01 3 183958984 183958984 G A VWA5B2 Missense_Mutation p.R991K 0.15 tolerated(0.92) benign(0) TCGA-5L-AAT1-01 3 184009209 184009209 C T ECE2 Silent p.F819F 0.18 TCGA-5L-AAT1-01 3 185165614 185165614 G A MAP3K13 Missense_Mutation p.D297N 0.11 deleterious(0.01) possibly_damaging(0.895) TCGA-5L-AAT1-01 3 185307906 185307906 C G SENP2 Missense_Mutation p.L36V 0.18 tolerated_low_confidence(0.25) benign(0.015) TCGA-5L-AAT1-01 3 186459623 186459623 G C KNG1 Missense_Mutation p.D480H 0.26 tolerated(0.05) benign(0.007) TCGA-5L-AAT1-01 3 186459659 186459659 G A KNG1 Missense_Mutation p.D492N 0.24 tolerated(0.3) benign(0.002) TCGA-5L-AAT1-01 3 186460007 186460007 G A KNG1 Missense_Mutation p.D608N 0.13 deleterious(0) benign(0.071) TCGA-5L-AAT1-01 3 186502264 186502264 G C EIF4A2 Missense_Mutation p.E25Q 0.09 tolerated_low_confidence(0.1) benign(0.025) TCGA-5L-AAT1-01 3 194147980 194147980 C T ATP13A3 Missense_Mutation p.M983I 0.21 deleterious(0.03) benign(0.391) TCGA-5L-AAT1-01 3 194338362 194338362 C T TMEM44 Intron 0.16 TCGA-5L-AAT1-01 3 194386331 194386331 C T LSG1 Missense_Mutation p.R159Q 0.20 deleterious(0.01) possibly_damaging(0.781) TCGA-5L-AAT1-01 3 195461478 195461478 G A MUC20 3'Flank 0.16 TCGA-5L-AAT1-01 3 195591053 195591053 C G TNK2 Nonstop_Mutation p.*1087Sext*15 0.22 TCGA-5L-AAT1-01 3 196453560 196453560 C T PIGX Intron 0.16 TCGA-5L-AAT1-01 3 19926043 19926043 G A EFHB Silent p.L666L 0.12 TCGA-5L-AAT1-01 3 20189894 20189894 G C KAT2B Splice_Site p.X741_splice 0.21 TCGA-5L-AAT1-01 3 23631761 23631761 G A UBE2E2 3'UTR 0.18 TCGA-5L-AAT1-01 3 25832735 25832735 C T OXSM Missense_Mutation p.S75L 0.17 tolerated(0.1) benign(0.27) TCGA-5L-AAT1-01 3 32612233 32612233 G T DYNC1LI1 Missense_Mutation p.F10L 0.17 tolerated_low_confidence(0.13) benign(0.153) TCGA-5L-AAT1-01 3 33539386 33539386 C T CLASP2 3'UTR 0.22 TCGA-5L-AAT1-01 3 33600855 33600855 G A CLASP2 Nonsense_Mutation p.Q993* 0.21 TCGA-5L-AAT1-01 3 37988622 37988622 G A CTDSPL Missense_Mutation p.D52N 0.21 tolerated(0.55) benign(0) TCGA-5L-AAT1-01 3 38565423 38565423 C T EXOG Missense_Mutation p.S226L 0.14 deleterious(0) possibly_damaging(0.61) TCGA-5L-AAT1-01 3 38889021 38889021 G T SCN11A Missense_Mutation p.L1514M 0.31 deleterious(0) possibly_damaging(0.78) TCGA-5L-AAT1-01 3 40558036 40558036 C A ZNF620 Missense_Mutation p.F317L 0.20 deleterious(0) probably_damaging(0.981) TCGA-5L-AAT1-01 3 41759257 41759257 G A ULK4 Silent p.L806L 0.17 TCGA-5L-AAT1-01 3 42706800 42706800 G A ZBTB47 3'UTR 0.17 TCGA-5L-AAT1-01 3 44285354 44285354 C T TOPAZ1 Silent p.F452F 0.21 TCGA-5L-AAT1-01 3 44541591 44541591 G A ZNF852 Silent p.H226H 0.14 TCGA-5L-AAT1-01 3 44694159 44694159 G A ZNF35 Silent p.E101E 0.26 TCGA-5L-AAT1-01 3 44776638 44776638 G C ZNF501 Missense_Mutation p.G242A 0.20 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-5L-AAT1-01 3 44777493 44777493 G A ZNF501 3'UTR 0.20 TCGA-5L-AAT1-01 3 47164744 47164744 G C SETD2 Nonsense_Mutation p.S461* 0.17 TCGA-5L-AAT1-01 3 48310785 48310785 G A ZNF589 3'UTR 0.14 TCGA-5L-AAT1-01 3 48626853 48626853 C T COL7A1 Missense_Mutation p.D741N 0.17 unknown(0) TCGA-5L-AAT1-01 3 49052416 49052416 G A WDR6 Missense_Mutation p.E1051K 0.17 tolerated(0.35) benign(0.007) TCGA-5L-AAT1-01 3 49842308 49842308 C T FAM212A Missense_Mutation p.S251L 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-5L-AAT1-01 3 50294200 50294200 C T GNAI2 Silent p.I213I 0.15 TCGA-5L-AAT1-01 3 51419812 51419812 G A DOCK3 3'UTR 0.18 TCGA-5L-AAT1-01 3 51746711 51746711 G C GRM2 Missense_Mutation p.E225Q 0.14 tolerated(1) benign(0.19) TCGA-5L-AAT1-01 3 5261277 5261277 C T EDEM1 3'UTR 0.12 TCGA-5L-AAT1-01 3 52661295 52661295 C T PBRM1 Missense_Mutation p.R512K 0.13 tolerated(0.2) benign(0.107) TCGA-5L-AAT1-01 3 52802563 52802563 C T NEK4 Missense_Mutation p.E51K 0.18 deleterious(0) probably_damaging(0.928) TCGA-5L-AAT1-01 3 52860909 52860909 C G ITIH4 Missense_Mutation p.K139N 0.16 tolerated(0.08) possibly_damaging(0.597) TCGA-5L-AAT1-01 3 58083689 58083689 G A FLNB Missense_Mutation p.D378N 0.18 deleterious(0.03) possibly_damaging(0.898) TCGA-5L-AAT1-01 3 62452055 62452055 C T CADPS Missense_Mutation p.E1171K 0.19 deleterious(0.02) benign(0.292) TCGA-5L-AAT1-01 3 64085485 64085485 G C PRICKLE2 Missense_Mutation p.L593V 0.18 deleterious(0.02) benign(0.279) TCGA-5L-AAT1-01 3 69244414 69244414 C T FRMD4B Missense_Mutation p.E446K 0.17 tolerated(0.19) benign(0.429) TCGA-5L-AAT1-01 3 72799713 72799713 C T SHQ1 Missense_Mutation p.E486K 0.19 tolerated_low_confidence(0.63) benign(0.003) TCGA-5L-AAT1-01 3 86117746 86117746 C G CADM2 3'Flank 0.15 TCGA-5L-AAT1-01 3 93611848 93611848 G A PROS1 Nonsense_Mutation p.Q362* 0.22 TCGA-5L-AAT1-01 3 97591749 97591749 G A CRYBG3 Missense_Mutation p.D571N 0.18 TCGA-5L-AAT1-01 3 98237728 98237728 C G CLDND1 Splice_Site p.X158_splice 0.08 TCGA-5L-AAT1-01 3 9834756 9834756 G A ARPC4 5'Flank 0.23 TCGA-5L-AAT1-01 3 9971756 9971756 C T IL17RC Nonsense_Mutation p.R472* 0.18 TCGA-5L-AAT1-01 3 9989017 9989017 G T PRRT3 Missense_Mutation p.L614M 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-5L-AAT1-01 4 100340207 100340207 C T ADH7 Silent p.K319K 0.18 TCGA-5L-AAT1-01 4 104095952 104095952 C G CENPE Missense_Mutation p.E530Q 0.13 probably_damaging(0.998) TCGA-5L-AAT1-01 4 106816848 106816848 C T NPNT Silent p.L13L 0.11 TCGA-5L-AAT1-01 4 114251595 114251595 G A ANK2 Missense_Mutation p.E1032K 0.22 probably_damaging(0.999) TCGA-5L-AAT1-01 4 114304104 114304104 C T ANK2 3'UTR 0.13 TCGA-5L-AAT1-01 4 114436335 114436335 C T CAMK2D Missense_Mutation p.E237K 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-5L-AAT1-01 4 114899759 114899759 G A ARSJ Missense_Mutation p.L78F 0.16 deleterious(0.05) possibly_damaging(0.579) TCGA-5L-AAT1-01 4 120419875 120419875 C T PDE5A Missense_Mutation p.E837K 0.17 tolerated(0.1) benign(0.162) TCGA-5L-AAT1-01 4 123170714 123170714 G A KIAA1109 Missense_Mutation p.E1863K 0.20 benign(0.092) TCGA-5L-AAT1-01 4 123900405 123900405 G A SPATA5 Missense_Mutation p.R578K 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-5L-AAT1-01 4 128629723 128629723 C G INTU Intron 0.12 TCGA-5L-AAT1-01 4 13602551 13602551 G A BOD1L1 Silent p.L1991L 0.16 TCGA-5L-AAT1-01 4 138440905 138440905 G C PCDH18 3'UTR 0.21 TCGA-5L-AAT1-01 4 139093029 139093029 C G SLC7A11 3'UTR 0.21 TCGA-5L-AAT1-01 4 141590805 141590805 C G TBC1D9 Missense_Mutation p.E474Q 0.19 tolerated(0.19) probably_damaging(0.993) TCGA-5L-AAT1-01 4 144359658 144359658 C T GAB1 Missense_Mutation p.S367L 0.20 tolerated(0.16) benign(0.008) TCGA-5L-AAT1-01 4 144468037 144468037 C G SMARCA5 Missense_Mutation p.P877A 0.23 tolerated(0.36) benign(0.001) TCGA-5L-AAT1-01 4 146461059 146461059 C G SMAD1 Silent p.L168L 0.19 TCGA-5L-AAT1-01 4 149356922 149356922 G A NR3C2 Missense_Mutation p.T364M 0.23 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-5L-AAT1-01 4 152025044 152025044 C G RPS3A Intron 0.04 TCGA-5L-AAT1-01 4 152096691 152096691 C G SH3D19 5'UTR 0.17 TCGA-5L-AAT1-01 4 154237036 154237036 C T TRIM2 Missense_Mutation p.S556F 0.24 deleterious(0) possibly_damaging(0.62) TCGA-5L-AAT1-01 4 155250812 155250812 C G DCHS2 Missense_Mutation p.E806Q 0.12 tolerated(1) benign(0.002) TCGA-5L-AAT1-01 4 155665652 155665652 G A LRAT Silent p.L58L 0.23 TCGA-5L-AAT1-01 4 156632370 156632370 G A GUCY1A3 Silent p.R351R 0.16 TCGA-5L-AAT1-01 4 159627341 159627341 G T ETFDH Missense_Mutation p.G429V 0.16 deleterious(0.03) probably_damaging(0.987) TCGA-5L-AAT1-01 4 160262927 160262927 G A RAPGEF2 Missense_Mutation p.A755T 0.16 tolerated(0.6) benign(0.002) TCGA-5L-AAT1-01 4 164272945 164272945 G A NPY5R 3'UTR 0.15 TCGA-5L-AAT1-01 4 170927005 170927005 C G MFAP3L Silent p.L8L 0.13 TCGA-5L-AAT1-01 4 178281806 178281806 G A NEIL3 Missense_Mutation p.R537K 0.09 tolerated(0.13) benign(0.159) TCGA-5L-AAT1-01 4 183063959 183063959 C T AC108142.1 RNA 0.33 TCGA-5L-AAT1-01 4 186241973 186241973 G A SNX25 Silent p.L313L 0.16 TCGA-5L-AAT1-01 4 20541061 20541061 C T SLIT2 Intron 0.21 TCGA-5L-AAT1-01 4 2066817 2066817 C A NAT8L 3'UTR 0.18 TCGA-5L-AAT1-01 4 2337458 2337458 G A ZFYVE28 Silent p.F225F 0.12 TCGA-5L-AAT1-01 4 25028534 25028534 G A LGI2 Silent p.I99I 0.20 TCGA-5L-AAT1-01 4 25408837 25408837 C G ANAPC4 Missense_Mutation p.R465G 0.18 deleterious(0.04) benign(0.414) TCGA-5L-AAT1-01 4 3210537 3210537 C G HTT Missense_Mutation p.L2064V 0.12 benign(0.006) TCGA-5L-AAT1-01 4 37435594 37435594 G T KIAA1239 Nonsense_Mutation p.E220* 0.19 TCGA-5L-AAT1-01 4 38139059 38139059 C T TBC1D1 3'UTR 0.13 TCGA-5L-AAT1-01 4 3952886 3952886 G C FAM86EP Intron 0.18 TCGA-5L-AAT1-01 4 41600975 41600975 C G LIMCH1 Silent p.L92L 0.06 TCGA-5L-AAT1-01 4 41746751 41746751 C T PHOX2B 3'UTR 0.20 TCGA-5L-AAT1-01 4 420174 420174 G A ABCA11P RNA 0.11 TCGA-5L-AAT1-01 4 42400127 42400127 G A SHISA3 Silent p.P18P 0.19 TCGA-5L-AAT1-01 4 44680684 44680684 C T GUF1 Silent p.L15L 0.14 TCGA-5L-AAT1-01 4 4473411 4473411 C T STX18 Missense_Mutation p.R64K 0.20 tolerated(0.59) benign(0.003) TCGA-5L-AAT1-01 4 466369 466369 G A ZNF721 Missense_Mutation p.S10F 0.25 tolerated(0.62) benign(0.129) TCGA-5L-AAT1-01 4 467927 467927 G A ZNF721 Intron 0.11 TCGA-5L-AAT1-01 4 47605592 47605592 G A CORIN Silent p.I878I 0.18 TCGA-5L-AAT1-01 4 53610090 53610090 G A ERVMER34-1 Missense_Mutation p.S533L 0.17 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-5L-AAT1-01 4 57845122 57845122 G C POLR2B 5'UTR 0.18 TCGA-5L-AAT1-01 4 656924 656924 C T PDE6B Missense_Mutation p.S623L 0.19 deleterious(0) possibly_damaging(0.57) TCGA-5L-AAT1-01 4 70066419 70066419 C T UGT2B11 Missense_Mutation p.M443I 0.13 deleterious(0.03) benign(0.008) TCGA-5L-AAT1-01 4 70160509 70160509 G A UGT2B28 Silent p.K524K 0.21 TCGA-5L-AAT1-01 4 70462090 70462090 C A UGT2A1 Nonsense_Mutation p.E292* 0.21 TCGA-5L-AAT1-01 4 71849267 71849267 C G MOB1B 3'Flank 0.18 TCGA-5L-AAT1-01 4 71849627 71849627 C T MOB1B 3'Flank 0.19 TCGA-5L-AAT1-01 4 72433911 72433911 G C SLC4A4 3'UTR 0.09 TCGA-5L-AAT1-01 4 73185098 73185098 G A ADAMTS3 Missense_Mutation p.R435C 0.06 deleterious(0) probably_damaging(0.993) TCGA-5L-AAT1-01 4 75023780 75023780 G A AC093677.1 Silent p.S102S 0.15 TCGA-5L-AAT1-01 4 76568565 76568565 C G G3BP2 3'UTR 0.14 TCGA-5L-AAT1-01 4 76711914 76711914 G C USO1 Missense_Mutation p.E404Q 0.10 tolerated(0.88) benign(0.01) TCGA-5L-AAT1-01 4 77089576 77089576 G A SCARB2 Silent p.V389V 0.19 TCGA-5L-AAT1-01 4 78695757 78695757 G C CNOT6L Missense_Mutation p.L81V 0.19 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 4 81118867 81118867 C T PRDM8 5'UTR 0.20 TCGA-5L-AAT1-01 4 8214526 8214526 G A SH3TC1 Missense_Mutation p.D116N 0.20 deleterious(0.02) possibly_damaging(0.581) TCGA-5L-AAT1-01 4 83812255 83812255 C T SEC31A 5'UTR 0.19 TCGA-5L-AAT1-01 4 86921927 86921927 C G ARHGAP24 3'UTR 0.12 TCGA-5L-AAT1-01 4 88035917 88035917 G C AFF1 Missense_Mutation p.Q644H 0.19 deleterious(0.03) unknown(0) TCGA-5L-AAT1-01 4 89018710 89018710 C T ABCG2 Missense_Mutation p.M514I 0.22 tolerated(0.38) benign(0.004) TCGA-5L-AAT1-01 4 99064349 99064349 G A STPG2 5'UTR 0.07 TCGA-5L-AAT1-01 5 102260675 102260675 G T PAM Missense_Mutation p.G124V 0.19 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 5 10397416 10397416 C T MARCH6 Silent p.F291F 0.17 TCGA-5L-AAT1-01 5 109120546 109120546 G A MAN2A1 Missense_Mutation p.R560K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT1-01 5 109155936 109155936 G C MAN2A1 Missense_Mutation p.E782Q 0.12 tolerated(0.26) probably_damaging(0.938) TCGA-5L-AAT1-01 5 112175448 112175448 G A APC Missense_Mutation p.R1386K 0.26 probably_damaging(0.997) TCGA-5L-AAT1-01 5 112363149 112363149 C G MCC Missense_Mutation p.K970N 0.20 deleterious(0.05) probably_damaging(0.985) TCGA-5L-AAT1-01 5 11412168 11412168 G C CTNND2 Missense_Mutation p.Q101E 0.15 deleterious(0.02) benign(0.017) TCGA-5L-AAT1-01 5 114573688 114573688 G T PGGT1B Missense_Mutation p.P116T 0.19 tolerated(0.29) benign(0.085) TCGA-5L-AAT1-01 5 114951421 114951421 G C TMED7 3'UTR 0.05 TCGA-5L-AAT1-01 5 115780241 115780241 G A SEMA6A 3'UTR 0.20 TCGA-5L-AAT1-01 5 122708358 122708358 G C CEP120 Missense_Mutation p.L823V 0.15 deleterious(0) possibly_damaging(0.493) TCGA-5L-AAT1-01 5 125880577 125880577 G A ALDH7A1 3'UTR 0.15 TCGA-5L-AAT1-01 5 126776509 126776509 C T MEGF10 Missense_Mutation p.S771F 0.24 deleterious(0) possibly_damaging(0.756) TCGA-5L-AAT1-01 5 128449011 128449011 C T ISOC1 3'UTR 0.05 TCGA-5L-AAT1-01 5 140189079 140189079 C T PCDHA4 Silent p.L769L 0.05 TCGA-5L-AAT1-01 5 140236795 140236795 C T PCDHA10 Silent p.L388L 0.20 TCGA-5L-AAT1-01 5 140264037 140264037 C G PCDHA13 Silent p.T728T 0.19 TCGA-5L-AAT1-01 5 140431242 140431242 G A PCDHB1 Missense_Mutation p.G63R 0.12 tolerated(0.38) probably_damaging(0.992) TCGA-5L-AAT1-01 5 140475089 140475089 G A PCDHB2 Missense_Mutation p.D239N 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-5L-AAT1-01 5 140537127 140537127 C T PCDHB17 Silent p.L517L 0.04 TCGA-5L-AAT1-01 5 140627433 140627433 G C PCDHB15 Missense_Mutation p.D763H 0.20 deleterious_low_confidence(0) benign(0.431) TCGA-5L-AAT1-01 5 140730136 140730136 C T PCDHGB1 Silent p.F103F 0.24 TCGA-5L-AAT1-01 5 140769697 140769697 C A PCDHGB4 Missense_Mutation p.S749Y 0.22 deleterious(0.01) possibly_damaging(0.894) TCGA-5L-AAT1-01 5 140792863 140792863 G C PCDHGA10 Missense_Mutation p.E41Q 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-5L-AAT1-01 5 140810807 140810807 G A PCDHGA12 Missense_Mutation p.D161N 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-5L-AAT1-01 5 140856750 140856750 C T PCDHGC3 Missense_Mutation p.S356F 0.19 deleterious(0.04) benign(0.055) TCGA-5L-AAT1-01 5 141019265 141019265 G A FCHSD1 3'UTR 0.23 TCGA-5L-AAT1-01 5 141026764 141026764 G A FCHSD1 Nonsense_Mutation p.Q288* 0.17 TCGA-5L-AAT1-01 5 143200050 143200050 C T HMHB1 Silent p.L15L 0.15 TCGA-5L-AAT1-01 5 143853953 143853953 G C KCTD16 3'UTR 0.29 TCGA-5L-AAT1-01 5 146775273 146775273 C T DPYSL3 Silent p.L605L 0.19 TCGA-5L-AAT1-01 5 147820087 147820087 G A FBXO38 Missense_Mutation p.E1016K 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-5L-AAT1-01 5 147821771 147821771 G C FBXO38 3'UTR 0.17 TCGA-5L-AAT1-01 5 148208007 148208007 C A ADRB2 3'UTR 0.15 TCGA-5L-AAT1-01 5 149503847 149503847 G A PDGFRB Silent p.N663N 0.21 TCGA-5L-AAT1-01 5 149901320 149901320 C T NDST1 Silent p.G168G 0.08 TCGA-5L-AAT1-01 5 150409735 150409735 G A TNIP1 3'UTR 0.15 TCGA-5L-AAT1-01 5 150410303 150410303 G C TNIP1 Missense_Mutation p.P628A 0.21 tolerated_low_confidence(0.79) benign(0) TCGA-5L-AAT1-01 5 150870771 150870771 G A SLC36A1 3'UTR 0.17 TCGA-5L-AAT1-01 5 150887006 150887006 G A FAT2 Missense_Mutation p.H4076Y 0.12 possibly_damaging(0.719) TCGA-5L-AAT1-01 5 153435838 153435838 G C MFAP3 3'UTR 0.23 TCGA-5L-AAT1-01 5 153789119 153789119 G A GALNT10 Missense_Mutation p.E395K 0.16 deleterious(0.02) benign(0.085) TCGA-5L-AAT1-01 5 154179453 154179453 C T LARP1 Missense_Mutation p.R446C 0.13 deleterious(0.01) possibly_damaging(0.847) TCGA-5L-AAT1-01 5 154287302 154287302 G A GEMIN5 Silent p.T748T 0.21 TCGA-5L-AAT1-01 5 161119169 161119169 C T GABRA6 Missense_Mutation p.S350L 0.21 tolerated(0.28) benign(0.226) TCGA-5L-AAT1-01 5 16681505 16681505 C G MYO10 Missense_Mutation p.E1433Q 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-5L-AAT1-01 5 167642095 167642095 C T TENM2 Missense_Mutation p.S1299L 0.15 tolerated(0.19) benign(0.069) TCGA-5L-AAT1-01 5 169020376 169020376 G T SPDL1 Nonsense_Mutation p.E119* 0.29 TCGA-5L-AAT1-01 5 169020393 169020393 G C SPDL1 Missense_Mutation p.R124S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT1-01 5 169477346 169477346 G C DOCK2 Missense_Mutation p.E1386D 0.24 tolerated(0.05) benign(0.193) TCGA-5L-AAT1-01 5 172537566 172537566 G C CREBRF Missense_Mutation p.D487H 0.22 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 5 172755414 172755414 G A STC2 5'UTR 0.20 TCGA-5L-AAT1-01 5 176709493 176709493 G A NSD1 Missense_Mutation p.E1974K 0.17 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 5 177547344 177547344 C G N4BP3 Missense_Mutation p.Q166E 0.17 tolerated(1) benign(0.002) TCGA-5L-AAT1-01 5 177580816 177580816 C T NHP2 Translation_Start_Site p.M1? 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-5L-AAT1-01 5 178035445 178035445 G A CLK4 Nonsense_Mutation p.Q356* 0.21 TCGA-5L-AAT1-01 5 178039526 178039526 C T CLK4 Silent p.L314L 0.05 TCGA-5L-AAT1-01 5 178373405 178373405 G A ZNF454 Missense_Mutation p.E27K 0.22 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 5 179041385 179041385 G A HNRNPH1 3'UTR 0.04 TCGA-5L-AAT1-01 5 180670822 180670822 C T GNB2L1 5'UTR 0.16 TCGA-5L-AAT1-01 5 24488047 24488047 G A CDH10 Missense_Mutation p.P698S 0.21 tolerated(0.52) probably_damaging(0.992) TCGA-5L-AAT1-01 5 33751606 33751606 C A ADAMTS12 Silent p.V179V 0.16 TCGA-5L-AAT1-01 5 35641756 35641756 C G SPEF2 Missense_Mutation p.Q129E 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-5L-AAT1-01 5 35910575 35910575 C G CAPSL Missense_Mutation p.D70H 0.15 deleterious(0.04) benign(0.33) TCGA-5L-AAT1-01 5 36182270 36182270 G C SKP2 3'UTR 0.17 TCGA-5L-AAT1-01 5 36268320 36268320 G C RANBP3L Silent p.L106L 0.14 TCGA-5L-AAT1-01 5 37148358 37148358 C G C5orf42 Missense_Mutation p.D2742H 0.16 tolerated(0.08) probably_damaging(0.963) TCGA-5L-AAT1-01 5 37198902 37198902 G A C5orf42 Nonsense_Mutation p.Q1192* 0.17 TCGA-5L-AAT1-01 5 38966783 38966783 G A RICTOR Missense_Mutation p.S420L 0.18 deleterious(0.05) benign(0.389) TCGA-5L-AAT1-01 5 465310 465310 G C EXOC3 Missense_Mutation p.E621Q 0.07 deleterious(0.04) benign(0.165) TCGA-5L-AAT1-01 5 5057909 5057909 G A LINC01020 RNA 0.15 TCGA-5L-AAT1-01 5 5200340 5200340 C A ADAMTS16 Missense_Mutation p.S470Y 0.13 deleterious(0.02) benign(0.33) TCGA-5L-AAT1-01 5 54459936 54459936 G A GPX8 Missense_Mutation p.E174K 0.05 tolerated(0.15) benign(0.02) TCGA-5L-AAT1-01 5 54516542 54516542 G T MCIDAS Silent p.V270V 0.21 TCGA-5L-AAT1-01 5 5462775 5462775 G C KIAA0947 Missense_Mutation p.E1110Q 0.07 deleterious(0.01) probably_damaging(0.945) TCGA-5L-AAT1-01 5 56168738 56168738 C A MAP3K1 Nonsense_Mutation p.S531* 0.40 TCGA-5L-AAT1-01 5 56777802 56777802 C T ACTBL2 Missense_Mutation p.D245N 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.708) TCGA-5L-AAT1-01 5 58511716 58511716 G A PDE4D Silent p.L178L 0.38 TCGA-5L-AAT1-01 5 63905113 63905113 G C RGS7BP 3'UTR 0.23 TCGA-5L-AAT1-01 5 64892891 64892891 G A TRIM23 Silent p.P432P 0.10 TCGA-5L-AAT1-01 5 64892992 64892992 T G TRIM23 Missense_Mutation p.I399L 0.19 tolerated(0.06) benign(0.354) TCGA-5L-AAT1-01 5 65084087 65084087 G A NLN Silent p.Q367Q 0.23 TCGA-5L-AAT1-01 5 65473479 65473479 C T SREK1 Missense_Mutation p.S573L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-5L-AAT1-01 5 665329 665329 G A TPPP Missense_Mutation p.S183F 0.29 deleterious(0) probably_damaging(0.962) TCGA-5L-AAT1-01 5 6755280 6755280 C T PAPD7 3'UTR 0.09 TCGA-5L-AAT1-01 5 71495628 71495628 C A MAP1B Nonsense_Mutation p.S2149* 0.08 TCGA-5L-AAT1-01 5 72311514 72311514 C G FCHO2 Nonsense_Mutation p.S221* 0.18 TCGA-5L-AAT1-01 5 72419436 72419436 C T TMEM171 Missense_Mutation p.S79F 0.22 tolerated(0.09) probably_damaging(1) TCGA-5L-AAT1-01 5 74021883 74021883 C T GFM2 Missense_Mutation p.E599K 0.14 tolerated(0.4) benign(0.021) TCGA-5L-AAT1-01 5 76988911 76988911 G T TBCA Intron 0.23 TCGA-5L-AAT1-01 5 7743818 7743818 C G ADCY2 Missense_Mutation p.L637V 0.14 tolerated(0.37) benign(0.009) TCGA-5L-AAT1-01 5 79026876 79026876 C G CMYA5 Missense_Mutation p.S763C 0.32 possibly_damaging(0.536) TCGA-5L-AAT1-01 5 79034690 79034690 G A CMYA5 Missense_Mutation p.E3368K 0.25 benign(0.306) TCGA-5L-AAT1-01 5 80724413 80724413 C G SSBP2 Missense_Mutation p.Q349H 0.04 deleterious_low_confidence(0) benign(0.212) TCGA-5L-AAT1-01 5 80785084 80785084 C T SSBP2 Silent p.L139L 0.15 TCGA-5L-AAT1-01 5 85589125 85589125 C T NBPF22P RNA 0.15 TCGA-5L-AAT1-01 5 89981736 89981736 C T GPR98 Silent p.I2138I 0.23 TCGA-5L-AAT1-01 5 90124984 90124984 C T GPR98 Missense_Mutation p.S5531F 0.25 possibly_damaging(0.831) TCGA-5L-AAT1-01 5 9629388 9629388 G A TAS2R1 Missense_Mutation p.H253Y 0.23 tolerated(0.07) benign(0.036) TCGA-5L-AAT1-01 6 10415626 10415626 C G TFAP2A 5'Flank 0.18 TCGA-5L-AAT1-01 6 105176773 105176773 G A HACE1 3'UTR 0.21 TCGA-5L-AAT1-01 6 105563658 105563658 G A BVES Silent p.I287I 0.12 TCGA-5L-AAT1-01 6 105726237 105726237 C T PREP Missense_Mutation p.D639N 0.13 deleterious(0) probably_damaging(0.927) TCGA-5L-AAT1-01 6 105825385 105825385 C T PREP Missense_Mutation p.E44K 0.16 tolerated(0.21) benign(0.008) TCGA-5L-AAT1-01 6 107000084 107000084 G A AIM1 Missense_Mutation p.R1414Q 0.13 tolerated(0.21) benign(0.031) TCGA-5L-AAT1-01 6 107113978 107113978 G C QRSL1 3'UTR 0.17 TCGA-5L-AAT1-01 6 107419907 107419907 G C BEND3 Missense_Mutation p.L30V 0.22 tolerated_low_confidence(0.16) benign(0.166) TCGA-5L-AAT1-01 6 107980114 107980114 G A SOBP 3'UTR 0.18 TCGA-5L-AAT1-01 6 111215005 111215005 C G AMD1 3'UTR 0.11 TCGA-5L-AAT1-01 6 111710333 111710333 G A REV3L Nonsense_Mutation p.Q280* 0.10 TCGA-5L-AAT1-01 6 116264211 116264211 G A FRK Silent p.I426I 0.09 TCGA-5L-AAT1-01 6 116565080 116565080 C T NT5DC1 Silent p.L421L 0.20 TCGA-5L-AAT1-01 6 117884462 117884462 T G GOPC Silent p.S448S 0.12 TCGA-5L-AAT1-01 6 119215522 119215522 G A ASF1A 5'UTR 0.12 TCGA-5L-AAT1-01 6 12123624 12123624 C G HIVEP1 Nonsense_Mutation p.S1199* 0.21 TCGA-5L-AAT1-01 6 122720969 122720969 G A HSF2 Nonsense_Mutation p.W29* 0.14 TCGA-5L-AAT1-01 6 125233433 125233433 G A RP11-510H23.1 RNA 0.17 TCGA-5L-AAT1-01 6 125623193 125623193 C A HDDC2 5'Flank 0.26 TCGA-5L-AAT1-01 6 126081937 126081937 G - HEY2 3'UTR 0.22 TCGA-5L-AAT1-01 6 127768471 127768471 C T KIAA0408 Silent p.S331S 0.14 TCGA-5L-AAT1-01 6 127794419 127794419 G T SOGA3 3'UTR 0.15 TCGA-5L-AAT1-01 6 127834191 127834191 C T SOGA3 Missense_Mutation p.A444T 0.06 deleterious(0) probably_damaging(0.987) TCGA-5L-AAT1-01 6 127835982 127835982 C G SOGA3 Missense_Mutation p.E438Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 6 132618239 132618239 C G MOXD1 3'UTR 0.10 TCGA-5L-AAT1-01 6 133091454 133091454 G A SLC18B1 Silent p.L442L 0.08 TCGA-5L-AAT1-01 6 13365752 13365752 C T GFOD1 Silent p.K132K 0.14 TCGA-5L-AAT1-01 6 138192400 138192400 G C TNFAIP3 Missense_Mutation p.L12F 0.11 tolerated(0.29) benign(0.011) TCGA-5L-AAT1-01 6 142400007 142400007 C G NMBR Missense_Mutation p.Q152H 0.21 tolerated(0.11) probably_damaging(0.963) TCGA-5L-AAT1-01 6 144835051 144835051 C G UTRN Missense_Mutation p.Q1651E 0.05 deleterious(0.01) benign(0.129) TCGA-5L-AAT1-01 6 146755729 146755729 G A GRM1 Missense_Mutation p.E1128K 0.16 tolerated_low_confidence(0.49) benign(0.014) TCGA-5L-AAT1-01 6 147038186 147038186 G C ADGB Missense_Mutation p.D637H 0.16 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 6 147556455 147556455 C T STXBP5 Silent p.F106F 0.18 TCGA-5L-AAT1-01 6 149953902 149953902 C G KATNA1 Missense_Mutation p.E105Q 0.13 tolerated(0.09) possibly_damaging(0.652) TCGA-5L-AAT1-01 6 152129098 152129098 G C ESR1 Missense_Mutation p.Q17H 0.17 deleterious_low_confidence(0.01) benign(0.162) TCGA-5L-AAT1-01 6 155635473 155635473 C T TFB1M Silent p.A30A 0.16 TCGA-5L-AAT1-01 6 157502141 157502141 G A ARID1B Silent p.T1058T 0.22 TCGA-5L-AAT1-01 6 158068301 158068301 C A ZDHHC14 Missense_Mutation p.S289Y 0.20 deleterious(0) probably_damaging(0.949) TCGA-5L-AAT1-01 6 158931301 158931301 C G TULP4 3'UTR 0.19 TCGA-5L-AAT1-01 6 158932391 158932391 G C TULP4 3'UTR 0.21 TCGA-5L-AAT1-01 6 158932470 158932470 C T TULP4 3'UTR 0.12 TCGA-5L-AAT1-01 6 159456768 159456768 C G TAGAP 3'UTR 0.15 TCGA-5L-AAT1-01 6 159651033 159651033 C T FNDC1 Missense_Mutation p.T456I 0.13 deleterious(0) unknown(0) TCGA-5L-AAT1-01 6 160109186 160109186 G A SOD2 Silent p.L105L 0.19 TCGA-5L-AAT1-01 6 160160045 160160045 C T WTAP Silent p.F18F 0.14 TCGA-5L-AAT1-01 6 161159600 161159600 G C PLG Missense_Mutation p.L611F 0.20 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 6 161552094 161552094 C A AGPAT4 3'UTR 0.21 TCGA-5L-AAT1-01 6 170102699 170102699 G C C6orf120 Missense_Mutation p.Q48H 0.31 tolerated(0.43) benign(0.013) TCGA-5L-AAT1-01 6 170103464 170103464 G A C6orf120 3'UTR 0.16 TCGA-5L-AAT1-01 6 170190162 170190162 G A LINC00242 RNA 0.15 TCGA-5L-AAT1-01 6 170201306 170201306 C T LINC00574 RNA 0.13 TCGA-5L-AAT1-01 6 17625032 17625032 C G NUP153 Missense_Mutation p.A1312P 0.20 deleterious(0.02) possibly_damaging(0.739) TCGA-5L-AAT1-01 6 17775254 17775254 C G KIF13A Missense_Mutation p.D1404H 0.17 tolerated(0.06) possibly_damaging(0.66) TCGA-5L-AAT1-01 6 17804719 17804719 C T KIF13A Missense_Mutation p.R776Q 0.07 tolerated(0.06) benign(0.027) TCGA-5L-AAT1-01 6 24418742 24418742 C G MRS2 Missense_Mutation p.S348C 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-5L-AAT1-01 6 24588857 24588857 C T KIAA0319 Missense_Mutation p.E320K 0.13 tolerated(0.67) benign(0.211) TCGA-5L-AAT1-01 6 25973510 25973510 C T TRIM38 Nonsense_Mutation p.Q291* 0.11 TCGA-5L-AAT1-01 6 26032069 26032069 C T HIST1H3B Missense_Mutation p.E74K 0.14 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-5L-AAT1-01 6 26056106 26056106 T C HIST1H1C Missense_Mutation p.K184R 0.07 deleterious(0.01) unknown(0) TCGA-5L-AAT1-01 6 26199108 26199108 C G HIST1H2AD Missense_Mutation p.E122Q 0.18 tolerated_low_confidence(0.06) benign(0.002) TCGA-5L-AAT1-01 6 26409768 26409768 C T BTN3A1 Silent p.F241F 0.16 TCGA-5L-AAT1-01 6 26431545 26431545 G A BTN2A3P RNA 0.17 TCGA-5L-AAT1-01 6 27805890 27805890 C T HIST1H2AK Silent p.K76K 0.14 TCGA-5L-AAT1-01 6 27833565 27833565 C T HIST1H2AL 3'UTR 0.07 TCGA-5L-AAT1-01 6 27840937 27840937 G A HIST1H4L 3'UTR 0.14 TCGA-5L-AAT1-01 6 27841011 27841011 C T HIST1H4L Missense_Mutation p.R93H 0.18 deleterious(0.03) possibly_damaging(0.598) TCGA-5L-AAT1-01 6 28403246 28403246 G C ZSCAN23 Missense_Mutation p.Q183E 0.13 tolerated(0.89) benign(0.112) TCGA-5L-AAT1-01 6 29555833 29555833 G C OR2H2 Missense_Mutation p.V38L 0.14 tolerated(0.79) benign(0.004) TCGA-5L-AAT1-01 6 29976921 29976921 G A ZNRD1-AS1 RNA 0.16 TCGA-5L-AAT1-01 6 30521160 30521160 G A GNL1 Missense_Mutation p.R259W 0.22 deleterious(0.02) possibly_damaging(0.676) TCGA-5L-AAT1-01 6 30557933 30557933 G C ABCF1 Missense_Mutation p.Q747H 0.19 deleterious(0) probably_damaging(0.988) TCGA-5L-AAT1-01 6 30889044 30889044 C G VARS2 Missense_Mutation p.Q562E 0.17 deleterious(0) possibly_damaging(0.492) TCGA-5L-AAT1-01 6 31616981 31616981 G A BAG6 Missense_Mutation p.L140F 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-5L-AAT1-01 6 31765634 31765634 C T LSM2 Missense_Mutation p.R63Q 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-5L-AAT1-01 6 31917322 31917322 T A CFB Missense_Mutation p.Y968N 0.23 tolerated(0.24) benign(0.009) TCGA-5L-AAT1-01 6 32057092 32057092 C T TNXB Missense_Mutation p.R808K 0.20 benign(0.152) TCGA-5L-AAT1-01 6 32160609 32160609 C G GPSM3 5'UTR 0.22 TCGA-5L-AAT1-01 6 32172007 32172007 C T NOTCH4 Missense_Mutation p.E1009K 0.12 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT1-01 6 32181995 32181995 C T NOTCH4 Missense_Mutation p.E687K 0.23 tolerated(0.32) benign(0.195) TCGA-5L-AAT1-01 6 3225894 3225894 C T TUBB2B Silent p.T143T 0.17 TCGA-5L-AAT1-01 6 32948905 32948905 C T BRD2 3'UTR 0.20 TCGA-5L-AAT1-01 6 32974925 32974925 G A HLA-DOA Silent p.I227I 0.16 TCGA-5L-AAT1-01 6 33172160 33172160 G C SLC39A7 3'UTR 0.20 TCGA-5L-AAT1-01 6 33259492 33259492 G C RGL2 3'UTR 0.23 TCGA-5L-AAT1-01 6 33656181 33656181 G A ITPR3 Missense_Mutation p.E2181K 0.24 deleterious(0) probably_damaging(0.965) TCGA-5L-AAT1-01 6 34855728 34855728 C T TAF11 Missense_Mutation p.D3N 0.27 tolerated(0.94) benign(0) TCGA-5L-AAT1-01 6 36238314 36238314 C G PNPLA1 Missense_Mutation p.F26L 0.11 tolerated(0.15) benign(0.438) TCGA-5L-AAT1-01 6 37142804 37142804 C T PIM1 3'UTR 0.19 TCGA-5L-AAT1-01 6 39284136 39284136 C G KCNK16 Intron 0.21 TCGA-5L-AAT1-01 6 4069467 4069467 C T FAM217A Silent p.V330V 0.19 TCGA-5L-AAT1-01 6 44143883 44143883 C T CAPN11 Nonsense_Mutation p.Q304* 0.06 TCGA-5L-AAT1-01 6 44310961 44310961 G C SPATS1 Missense_Mutation p.E43D 0.24 tolerated_low_confidence(0.05) benign(0.027) TCGA-5L-AAT1-01 6 48036146 48036146 C G PTCHD4 Missense_Mutation p.K82N 0.17 deleterious(0) probably_damaging(0.977) TCGA-5L-AAT1-01 6 52357161 52357161 G C EFHC1 3'UTR 0.21 TCGA-5L-AAT1-01 6 53516928 53516928 C T KLHL31 Missense_Mutation p.C458Y 0.12 deleterious(0.03) probably_damaging(1) TCGA-5L-AAT1-01 6 64282494 64282494 C T PTP4A1 5'UTR 0.25 TCGA-5L-AAT1-01 6 70048809 70048809 C T BAI3 Nonsense_Mutation p.Q1064* 0.23 TCGA-5L-AAT1-01 6 70639461 70639461 C T COL19A1 Nonsense_Mutation p.Q179* 0.18 TCGA-5L-AAT1-01 6 7387302 7387302 G A CAGE1 Silent p.T35T 0.18 TCGA-5L-AAT1-01 6 73902355 73902355 G T KCNQ5 Nonsense_Mutation p.E612* 0.12 TCGA-5L-AAT1-01 6 74116145 74116145 G A DDX43 Missense_Mutation p.G289E 0.14 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 6 80196478 80196478 C G LCA5 3'UTR 0.18 TCGA-5L-AAT1-01 6 83846889 83846889 C T DOPEY1 Intron 0.14 TCGA-5L-AAT1-01 6 83905812 83905812 G A RWDD2A Missense_Mutation p.E234K 0.19 tolerated(0.12) benign(0.007) TCGA-5L-AAT1-01 6 84836151 84836151 C G KIAA1009 Missense_Mutation p.K1317N 0.13 tolerated(0.11) benign(0.33) TCGA-5L-AAT1-01 6 87970312 87970312 G A ZNF292 Missense_Mutation p.R2322K 0.17 tolerated(0.37) benign(0.007) TCGA-5L-AAT1-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.33 deleterious(0) possibly_damaging(0.79) TCGA-5L-AAT1-01 6 88299720 88299720 C A RARS2 5'UTR 0.15 TCGA-5L-AAT1-01 6 90371955 90371955 C G MDN1 Missense_Mutation p.D4806H 0.21 possibly_damaging(0.867) TCGA-5L-AAT1-01 6 90564619 90564619 G C CASP8AP2 RNA 0.12 TCGA-5L-AAT1-01 6 90660229 90660229 C G BACH2 Silent p.G532G 0.22 TCGA-5L-AAT1-01 6 96656034 96656034 C G FUT9 3'UTR 0.14 TCGA-5L-AAT1-01 6 9933535 9933535 G A OFCC1 Nonsense_Mutation p.Q7* 0.18 TCGA-5L-AAT1-01 6 99771465 99771465 G A FAXC Silent p.F226F 0.16 TCGA-5L-AAT1-01 7 100279211 100279211 G C GIGYF1 3'UTR 0.19 TCGA-5L-AAT1-01 7 100348274 100348274 G A ZAN Missense_Mutation p.D426N 0.11 benign(0.331) TCGA-5L-AAT1-01 7 102398298 102398298 C T FAM185A Intron 0.18 TCGA-5L-AAT1-01 7 102453839 102453839 C G FBXL13 Missense_Mutation p.E720Q 0.07 deleterious_low_confidence(0.03) benign(0.016) TCGA-5L-AAT1-01 7 102739210 102739210 C T ARMC10 3'UTR 0.18 TCGA-5L-AAT1-01 7 103179651 103179651 C T RELN Missense_Mutation p.D2352N 0.17 tolerated(0.38) probably_damaging(0.997) TCGA-5L-AAT1-01 7 104742411 104742411 C T KMT2E Missense_Mutation p.R656W 0.17 deleterious(0) possibly_damaging(0.689) TCGA-5L-AAT1-01 7 104786991 104786991 C T SRPK2 Missense_Mutation p.E246K 0.29 deleterious(0.02) benign(0.177) TCGA-5L-AAT1-01 7 106822935 106822935 C T HBP1 Missense_Mutation p.S96L 0.14 tolerated(0.2) probably_damaging(0.977) TCGA-5L-AAT1-01 7 108213970 108213970 G A DNAJB9 3'UTR 0.24 TCGA-5L-AAT1-01 7 113519106 113519106 C T PPP1R3A Missense_Mutation p.D681N 0.15 tolerated(0.11) benign(0.111) TCGA-5L-AAT1-01 7 11446670 11446670 C T THSD7A Missense_Mutation p.R1310Q 0.26 deleterious(0) probably_damaging(0.976) TCGA-5L-AAT1-01 7 117067506 117067506 C T ASZ1 Silent p.A3A 0.19 TCGA-5L-AAT1-01 7 120969238 120969238 G A WNT16 5'UTR 0.20 TCGA-5L-AAT1-01 7 121637934 121637934 G A PTPRZ1 Missense_Mutation p.G372S 0.19 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 7 122303375 122303375 C T CADPS2 Silent p.L234L 0.09 TCGA-5L-AAT1-01 7 122303495 122303495 C G CADPS2 Missense_Mutation p.L194F 0.16 deleterious(0) probably_damaging(0.992) TCGA-5L-AAT1-01 7 129948158 129948158 G T CPA4 Missense_Mutation p.W238C 0.21 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 7 130020353 130020353 G A CPA1 5'UTR 0.19 TCGA-5L-AAT1-01 7 130353643 130353643 G A TSGA13 3'UTR 0.14 TCGA-5L-AAT1-01 7 131814506 131814506 C T PLXNA4 3'UTR 0.06 TCGA-5L-AAT1-01 7 132192309 132192309 C G PLXNA4 Missense_Mutation p.D382H 0.08 deleterious(0.02) probably_damaging(0.937) TCGA-5L-AAT1-01 7 134217830 134217830 G A AKR1B10 Nonsense_Mutation p.W142* 0.07 TCGA-5L-AAT1-01 7 134728827 134728827 G T AGBL3 Nonsense_Mutation p.G518* 0.16 TCGA-5L-AAT1-01 7 135287651 135287651 C T NUP205 Nonsense_Mutation p.Q871* 0.05 TCGA-5L-AAT1-01 7 135300770 135300770 C G NUP205 Silent p.L1139L 0.15 TCGA-5L-AAT1-01 7 135377013 135377013 C T SLC13A4 Intron 0.16 TCGA-5L-AAT1-01 7 137271911 137271911 G A DGKI Nonsense_Mutation p.Q453* 0.07 TCGA-5L-AAT1-01 7 137560771 137560771 G A CREB3L2 3'UTR 0.19 TCGA-5L-AAT1-01 7 138824675 138824675 G A TTC26 Missense_Mutation p.E92K 0.16 tolerated(0.62) benign(0.014) TCGA-5L-AAT1-01 7 139045012 139045012 C T C7orf55-LUC7L2 Missense_Mutation p.S2L 0.33 deleterious(0) probably_damaging(0.963) TCGA-5L-AAT1-01 7 13946154 13946154 G T ETV1 Silent p.L337L 0.26 TCGA-5L-AAT1-01 7 139791623 139791623 G A KDM7A Silent p.I904I 0.14 TCGA-5L-AAT1-01 7 140373987 140373987 C G ADCK2 Nonsense_Mutation p.S286* 0.15 TCGA-5L-AAT1-01 7 140534578 140534578 G C BRAF Missense_Mutation p.S112C 0.16 deleterious(0.04) benign(0.004) TCGA-5L-AAT1-01 7 142131504 142131504 G C TRBV5-6 Nonsense_Mutation p.S84* 0.13 TCGA-5L-AAT1-01 7 142448737 142448737 G T TRBV29-1 Nonsense_Mutation p.E111* 0.32 TCGA-5L-AAT1-01 7 142630602 142630602 G C TRPV5 5'UTR 0.16 TCGA-5L-AAT1-01 7 143657530 143657530 C T OR2F1 Missense_Mutation p.S156F 0.15 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 7 143792421 143792421 C G OR2A12 Missense_Mutation p.S74W 0.17 deleterious(0) probably_damaging(0.989) TCGA-5L-AAT1-01 7 148951590 148951590 C G ZNF212 3'UTR 0.28 TCGA-5L-AAT1-01 7 149129486 149129486 G C ZNF777 Missense_Mutation p.S626C 0.15 tolerated_low_confidence(0.09) benign(0.004) TCGA-5L-AAT1-01 7 149474023 149474023 G C ZNF467 5'Flank 0.17 TCGA-5L-AAT1-01 7 150093768 150093768 G C ZNF775 Missense_Mutation p.E67Q 0.09 deleterious(0.01) possibly_damaging(0.761) TCGA-5L-AAT1-01 7 150390078 150390078 G C GIMAP2 Missense_Mutation p.R235T 0.14 tolerated(0.07) benign(0.021) TCGA-5L-AAT1-01 7 150417176 150417176 G T GIMAP1 Silent p.R28R 0.19 TCGA-5L-AAT1-01 7 150696402 150696402 G C NOS3 Missense_Mutation p.E361Q 0.12 deleterious(0) probably_damaging(0.995) TCGA-5L-AAT1-01 7 150746046 150746046 C T ASIC3 Missense_Mutation p.S25L 0.15 deleterious(0) benign(0.176) TCGA-5L-AAT1-01 7 150767098 150767098 G A SLC4A2 Silent p.Q404Q 0.13 TCGA-5L-AAT1-01 7 150931036 150931036 C T CHPF2 5'UTR 0.28 TCGA-5L-AAT1-01 7 151818674 151818674 G A GALNT11 Missense_Mutation p.R580K 0.24 tolerated(1) benign(0.001) TCGA-5L-AAT1-01 7 154876311 154876311 C T HTR5A 3'UTR 0.16 TCGA-5L-AAT1-01 7 155570307 155570307 C T RBM33 3'UTR 0.19 TCGA-5L-AAT1-01 7 158526802 158526802 G A ESYT2 3'UTR 0.08 TCGA-5L-AAT1-01 7 16823601 16823601 G A TSPAN13 3'UTR 0.20 TCGA-5L-AAT1-01 7 23751757 23751757 C T STK31 Silent p.Y30Y 0.14 TCGA-5L-AAT1-01 7 25175867 25175867 G C C7orf31 Missense_Mutation p.F499L 0.17 tolerated(0.67) benign(0.003) TCGA-5L-AAT1-01 7 26251953 26251953 G C CBX3 3'UTR 0.07 TCGA-5L-AAT1-01 7 27141739 27141739 G A HOXA2 Silent p.L127L 0.05 TCGA-5L-AAT1-01 7 33069231 33069231 G C NT5C3A Intron 0.13 TCGA-5L-AAT1-01 7 35872489 35872489 G C SEPT7 Missense_Mutation p.E51Q 0.19 tolerated(0.2) possibly_damaging(0.699) TCGA-5L-AAT1-01 7 37903043 37903043 G A NME8 Missense_Mutation p.E145K 0.23 tolerated(0.19) benign(0.049) TCGA-5L-AAT1-01 7 42959665 42959665 C T PSMA2 Intron 0.32 TCGA-5L-AAT1-01 7 43351365 43351365 C T HECW1 Silent p.L11L 0.13 TCGA-5L-AAT1-01 7 43622836 43622836 G A STK17A 5'UTR 0.15 TCGA-5L-AAT1-01 7 44147419 44147419 C T AEBP1 Missense_Mutation p.R251W 0.11 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-5L-AAT1-01 7 44664064 44664064 C G OGDH Missense_Mutation p.S41C 0.16 deleterious(0.04) benign(0.285) TCGA-5L-AAT1-01 7 45124937 45124937 G C NACAD Missense_Mutation p.S281C 0.19 deleterious(0) probably_damaging(0.993) TCGA-5L-AAT1-01 7 47814525 47814525 C G PKD1L1 3'UTR 0.22 TCGA-5L-AAT1-01 7 48316032 48316032 C T ABCA13 Silent p.L2257L 0.16 TCGA-5L-AAT1-01 7 48317713 48317713 C G ABCA13 Missense_Mutation p.L2308V 0.20 benign(0.346) TCGA-5L-AAT1-01 7 48317899 48317899 C G ABCA13 Missense_Mutation p.L2370V 0.09 benign(0.11) TCGA-5L-AAT1-01 7 48407500 48407500 G A ABCA13 Missense_Mutation p.E3600K 0.06 probably_damaging(1) TCGA-5L-AAT1-01 7 5352546 5352546 G T TNRC18 Missense_Mutation p.S2659Y 0.36 unknown(0) TCGA-5L-AAT1-01 7 5353115 5353115 G A TNRC18 Silent p.V2469V 0.24 TCGA-5L-AAT1-01 7 54820105 54820105 C T SEC61G Silent p.%3D 0.20 TCGA-5L-AAT1-01 7 64649394 64649394 C G INTS4L1 RNA 0.13 TCGA-5L-AAT1-01 7 6542701 6542701 C T GRID2IP Missense_Mutation p.E1001K 0.27 deleterious(0.02) benign(0.174) TCGA-5L-AAT1-01 7 66301757 66301757 C T GTF2IRD1P1 RNA 0.15 TCGA-5L-AAT1-01 7 6655785 6655785 G A ZNF853 5'UTR 0.35 TCGA-5L-AAT1-01 7 71252455 71252455 G C CALN1 3'UTR 0.17 TCGA-5L-AAT1-01 7 71252472 71252472 G C CALN1 3'UTR 0.18 TCGA-5L-AAT1-01 7 76751981 76751981 G A CCDC146 5'UTR 0.15 TCGA-5L-AAT1-01 7 80103605 80103605 G A GNAT3 Silent p.I184I 0.22 TCGA-5L-AAT1-01 7 80374241 80374241 C T SEMA3C Missense_Mutation p.R742K 0.15 deleterious(0.02) probably_damaging(0.952) TCGA-5L-AAT1-01 7 83277750 83277750 G A SEMA3E Missense_Mutation p.H37Y 0.24 tolerated(1) benign(0.432) TCGA-5L-AAT1-01 7 86415738 86415738 G C GRM3 Missense_Mutation p.W210C 0.22 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 7 87083899 87083899 G A ABCB4 Missense_Mutation p.S99F 0.16 deleterious(0.02) benign(0.013) TCGA-5L-AAT1-01 7 92764297 92764297 C G SAMD9L Missense_Mutation p.D330H 0.13 deleterious(0.04) benign(0.02) TCGA-5L-AAT1-01 7 92764484 92764484 C G SAMD9L Missense_Mutation p.M267I 0.30 tolerated(0.39) benign(0.033) TCGA-5L-AAT1-01 7 93065375 93065375 C G CALCR Missense_Mutation p.M380I 0.11 deleterious(0.01) benign(0.068) TCGA-5L-AAT1-01 7 94139447 94139447 C A CASD1 Missense_Mutation p.F17L 0.16 tolerated(0.29) possibly_damaging(0.899) TCGA-5L-AAT1-01 7 94293156 94293156 C T PEG10 Silent p.F96F 0.31 TCGA-5L-AAT1-01 7 95657491 95657491 C G DYNC1I1 Missense_Mutation p.S342C 0.23 deleterious(0.01) possibly_damaging(0.765) TCGA-5L-AAT1-01 7 98790693 98790693 G T KPNA7 Silent p.I195I 0.13 TCGA-5L-AAT1-01 7 98992240 98992240 C G ARPC1B 3'UTR 0.23 TCGA-5L-AAT1-01 7 99277478 99277478 G A CYP3A5 Silent p.L14L 0.16 TCGA-5L-AAT1-01 7 99767889 99767889 G C GPC2 Silent p.L568L 0.21 TCGA-5L-AAT1-01 8 100779037 100779037 G C VPS13B Missense_Mutation p.Q2387H 0.18 tolerated(0.06) possibly_damaging(0.781) TCGA-5L-AAT1-01 8 100999713 100999713 G A RGS22 Silent p.L1051L 0.15 TCGA-5L-AAT1-01 8 103297427 103297427 G A UBR5 Missense_Mutation p.S1875F 0.16 deleterious(0) probably_damaging(0.982) TCGA-5L-AAT1-01 8 103335643 103335643 G A UBR5 Silent p.V560V 0.11 TCGA-5L-AAT1-01 8 106811065 106811065 G A ZFPM2 Missense_Mutation p.E285K 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-5L-AAT1-01 8 107691491 107691491 C T OXR1 Nonsense_Mutation p.Q93* 0.16 TCGA-5L-AAT1-01 8 109228656 109228656 C G EIF3E Silent p.L312L 0.10 TCGA-5L-AAT1-01 8 110523131 110523131 C T PKHD1L1 Nonsense_Mutation p.R3841* 0.16 TCGA-5L-AAT1-01 8 11702675 11702675 C T CTSB Missense_Mutation p.A327T 0.14 tolerated(0.06) possibly_damaging(0.615) TCGA-5L-AAT1-01 8 117887203 117887203 C G RAD21 5'Flank 0.24 TCGA-5L-AAT1-01 8 120118377 120118377 G A COLEC10 Missense_Mutation p.E261K 0.09 tolerated(0.18) probably_damaging(0.944) TCGA-5L-AAT1-01 8 12040107 12040107 C G FAM86B1 3'UTR 0.04 TCGA-5L-AAT1-01 8 122626993 122626993 C T HAS2 Missense_Mutation p.E339K 0.14 deleterious(0.01) probably_damaging(1) TCGA-5L-AAT1-01 8 124027417 124027417 G A DERL1 3'UTR 0.15 TCGA-5L-AAT1-01 8 12870294 12870294 G A KIAA1456 Missense_Mutation p.E86K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-5L-AAT1-01 8 129162381 129162381 C T MIR1208 RNA 0.12 TCGA-5L-AAT1-01 8 12941191 12941191 T C DLC1 3'UTR 0.13 TCGA-5L-AAT1-01 8 12941638 12941638 C G DLC1 3'UTR 0.21 TCGA-5L-AAT1-01 8 131964169 131964169 C G ADCY8 Missense_Mutation p.E396Q 0.16 tolerated(0.16) benign(0.035) TCGA-5L-AAT1-01 8 133859353 133859353 G A PHF20L1 3'UTR 0.19 TCGA-5L-AAT1-01 8 143561136 143561136 G T BAI1 Silent p.R603R 0.22 TCGA-5L-AAT1-01 8 144650770 144650770 G A MROH6 Silent p.L532L 0.20 TCGA-5L-AAT1-01 8 144790027 144790027 G A CCDC166 Nonsense_Mutation p.Q85* 0.15 TCGA-5L-AAT1-01 8 144801009 144801009 C G MAPK15 Missense_Mutation p.I117M 0.11 deleterious(0) probably_damaging(0.991) TCGA-5L-AAT1-01 8 145639248 145639248 G T SLC39A4 Silent p.P435P 0.19 TCGA-5L-AAT1-01 8 145773692 145773692 C T ARHGAP39 Missense_Mutation p.E260K 0.16 tolerated(0.5) benign(0.138) TCGA-5L-AAT1-01 8 17079051 17079051 G C ZDHHC2 3'UTR 0.24 TCGA-5L-AAT1-01 8 182347 182347 G C ZNF596 5'Flank 0.13 TCGA-5L-AAT1-01 8 20070308 20070308 C A ATP6V1B2 Silent p.I273I 0.15 TCGA-5L-AAT1-01 8 22476459 22476459 C T CCAR2 Missense_Mutation p.R818C 0.22 tolerated(0.11) possibly_damaging(0.871) TCGA-5L-AAT1-01 8 22477558 22477558 G A CCAR2 3'UTR 0.23 TCGA-5L-AAT1-01 8 22582402 22582402 C G PEBP4 Missense_Mutation p.Q157H 0.15 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 8 23002572 23002572 C T TNFRSF10D Missense_Mutation p.R256K 0.13 tolerated(0.31) benign(0.122) TCGA-5L-AAT1-01 8 26721992 26721992 C G ADRA1A Missense_Mutation p.W165C 0.17 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 8 27887852 27887852 C G NUGGC Missense_Mutation p.Q664H 0.18 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 8 28206682 28206682 G A ZNF395 Silent p.L464L 0.13 TCGA-5L-AAT1-01 8 28908811 28908811 G A HMBOX1 3'UTR 0.14 TCGA-5L-AAT1-01 8 38146235 38146235 C T WHSC1L1 Missense_Mutation p.D1091N 0.29 deleterious(0) probably_damaging(0.995) TCGA-5L-AAT1-01 8 38854559 38854559 G A ADAM9 5'UTR 0.16 TCGA-5L-AAT1-01 8 39089590 39089590 C G ADAM32 Missense_Mutation p.Q524E 0.19 deleterious(0.03) probably_damaging(0.944) TCGA-5L-AAT1-01 8 41511782 41511782 G A ANK1 3'Flank 0.05 TCGA-5L-AAT1-01 8 42202523 42202523 G T POLB Nonsense_Mutation p.E58* 0.15 TCGA-5L-AAT1-01 8 48309125 48309125 C G SPIDR Missense_Mutation p.Q239E 0.20 tolerated(0.14) benign(0.023) TCGA-5L-AAT1-01 8 48805888 48805888 G C PRKDC Missense_Mutation p.L1220V 0.16 probably_damaging(0.977) TCGA-5L-AAT1-01 8 48846644 48846644 C T PRKDC Missense_Mutation p.E502K 0.22 benign(0.098) TCGA-5L-AAT1-01 8 52359712 52359712 G C PXDNL Silent p.L459L 0.17 TCGA-5L-AAT1-01 8 53062326 53062326 C T ST18 Missense_Mutation p.S673N 0.20 deleterious(0.04) probably_damaging(1) TCGA-5L-AAT1-01 8 57228708 57228708 G C SDR16C5 Missense_Mutation p.L67V 0.21 tolerated(0.19) benign(0.186) TCGA-5L-AAT1-01 8 61654172 61654172 C G CHD7 Missense_Mutation p.Q61E 0.20 benign(0.042) TCGA-5L-AAT1-01 8 6420438 6420438 G A ANGPT2 Silent p.F6F 0.16 TCGA-5L-AAT1-01 8 67786293 67786293 C T MCMDC2 5'UTR 0.20 TCGA-5L-AAT1-01 8 68084788 68084788 G A CSPP1 Missense_Mutation p.R984K 0.15 tolerated(0.35) benign(0.019) TCGA-5L-AAT1-01 8 68107753 68107753 G T CSPP1 Silent p.L1197L 0.18 TCGA-5L-AAT1-01 8 71510443 71510443 C A TRAM1 Missense_Mutation p.D79Y 0.24 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 8 75898301 75898301 C G CRISPLD1 Missense_Mutation p.P27A 0.10 deleterious(0.02) benign(0.08) TCGA-5L-AAT1-01 8 80949470 80949470 G C TPD52 3'UTR 0.26 TCGA-5L-AAT1-01 8 81411993 81411993 G A ZBTB10 Missense_Mutation p.A413T 0.24 tolerated(0.43) benign(0.227) TCGA-5L-AAT1-01 8 81599491 81599491 G C ZNF704 Silent p.L176L 0.11 TCGA-5L-AAT1-01 8 85833291 85833291 C G RALYL 3'UTR 0.23 TCGA-5L-AAT1-01 8 91971192 91971192 C T C8orf88 3'UTR 0.18 TCGA-5L-AAT1-01 8 94767096 94767096 G A TMEM67 5'UTR 0.12 TCGA-5L-AAT1-01 8 94815840 94815840 C G TMEM67 Missense_Mutation p.F750L 0.16 deleterious(0) possibly_damaging(0.779) TCGA-5L-AAT1-01 8 95262705 95262705 G A GEM Missense_Mutation p.R242W 0.21 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 8 95686562 95686562 C G ESRP1 Missense_Mutation p.I493M 0.21 deleterious(0) probably_damaging(0.997) TCGA-5L-AAT1-01 8 95718415 95718415 C G ESRP1 3'UTR 0.16 TCGA-5L-AAT1-01 8 95732149 95732149 G T DPY19L4 5'UTR 0.44 TCGA-5L-AAT1-01 8 98288742 98288742 G A TSPYL5 3'UTR 0.14 TCGA-5L-AAT1-01 9 100258139 100258139 C A TDRD7 Missense_Mutation p.L1091M 0.20 tolerated(0.16) possibly_damaging(0.867) TCGA-5L-AAT1-01 9 101147948 101147948 C A GABBR2 Nonsense_Mutation p.E546* 0.20 TCGA-5L-AAT1-01 9 102628976 102628976 C T NR4A3 3'UTR 0.27 TCGA-5L-AAT1-01 9 106876302 106876302 G C SMC2 Missense_Mutation p.R491T 0.22 tolerated(0.56) benign(0.01) TCGA-5L-AAT1-01 9 107528603 107528603 C G NIPSNAP3B Intron 0.16 TCGA-5L-AAT1-01 9 107528613 107528613 C T NIPSNAP3B Missense_Mutation p.S23L 0.17 deleterious(0.01) benign(0.137) TCGA-5L-AAT1-01 9 107666018 107666018 G A ABCA1 5'UTR 0.16 TCGA-5L-AAT1-01 9 109689959 109689959 G A ZNF462 Missense_Mutation p.E1256K 0.10 possibly_damaging(0.516) TCGA-5L-AAT1-01 9 120475753 120475753 C T TLR4 Silent p.L449L 0.15 TCGA-5L-AAT1-01 9 125003915 125003915 C G RBM18 3'UTR 0.27 TCGA-5L-AAT1-01 9 125667551 125667551 G A ZBTB6 3'Flank 0.17 TCGA-5L-AAT1-01 9 126777620 126777620 C T LHX2 Silent p.F181F 0.20 TCGA-5L-AAT1-01 9 12775751 12775751 G C LURAP1L Missense_Mutation p.E13Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 9 129157940 129157940 C A MVB12B Nonsense_Mutation p.S209* 0.21 TCGA-5L-AAT1-01 9 130487150 130487150 G C TTC16 Missense_Mutation p.K411N 0.18 deleterious(0.04) possibly_damaging(0.598) TCGA-5L-AAT1-01 9 130656839 130656839 G C ST6GALNAC6 Silent p.L83L 0.11 TCGA-5L-AAT1-01 9 130931396 130931396 C T CIZ1 Missense_Mutation p.E744K 0.20 deleterious(0.05) benign(0.009) TCGA-5L-AAT1-01 9 130948046 130948046 C T CIZ1 Missense_Mutation p.R123Q 0.12 deleterious(0) possibly_damaging(0.656) TCGA-5L-AAT1-01 9 131038573 131038573 G C SWI5 Missense_Mutation p.R50T 0.17 tolerated_low_confidence(0.28) benign(0.004) TCGA-5L-AAT1-01 9 13123259 13123259 C G MPDZ Missense_Mutation p.D1616H 0.22 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 9 13126544 13126544 C T MPDZ Missense_Mutation p.E1535K 0.24 deleterious(0) benign(0.067) TCGA-5L-AAT1-01 9 13126570 13126570 C T MPDZ Missense_Mutation p.G1526E 0.21 tolerated(0.07) benign(0.248) TCGA-5L-AAT1-01 9 131370194 131370194 C T SPTAN1 Nonsense_Mutation p.Q1404* 0.09 TCGA-5L-AAT1-01 9 131811718 131811718 G T FAM73B Missense_Mutation p.R160I 0.29 tolerated(0.05) benign(0.427) TCGA-5L-AAT1-01 9 131822903 131822903 G A FAM73B Missense_Mutation p.E290K 0.17 tolerated(0.25) benign(0.347) TCGA-5L-AAT1-01 9 133346292 133346292 G A ASS1 Splice_Site p.X189_splice 0.20 TCGA-5L-AAT1-01 9 134369789 134369789 C G PRRC2B Intron 0.08 TCGA-5L-AAT1-01 9 135753571 135753571 G C AK8 Missense_Mutation p.F24L 0.27 deleterious(0) benign(0.239) TCGA-5L-AAT1-01 9 136269129 136269129 G A C9orf96 Silent p.V563V 0.25 TCGA-5L-AAT1-01 9 136319553 136319553 C G ADAMTS13 Missense_Mutation p.L1021V 0.10 tolerated(0.23) possibly_damaging(0.507) TCGA-5L-AAT1-01 9 139265395 139265395 G C CARD9 Silent p.L175L 0.29 TCGA-5L-AAT1-01 9 139747621 139747621 C T MAMDC4 Silent p.F38F 0.19 TCGA-5L-AAT1-01 9 140138153 140138153 C T FAM166A Silent p.%3D 0.19 TCGA-5L-AAT1-01 9 140146965 140146965 C A C9orf173 Missense_Mutation p.D160E 0.18 tolerated(0.06) benign(0.118) TCGA-5L-AAT1-01 9 14313607 14313607 G A NFIB 5'UTR 0.16 TCGA-5L-AAT1-01 9 15591423 15591423 C A CCDC171 Missense_Mutation p.Q138K 0.24 tolerated(0.21) benign(0.014) TCGA-5L-AAT1-01 9 16412231 16412231 G A BNC2 3'UTR 0.21 TCGA-5L-AAT1-01 9 18928705 18928705 G C FAM154A Missense_Mutation p.P257R 0.20 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 9 19060186 19060186 G C HAUS6 Silent p.L555L 0.20 TCGA-5L-AAT1-01 9 19369915 19369915 C T DENND4C Nonsense_Mutation p.Q1820* 0.20 TCGA-5L-AAT1-01 9 21367456 21367456 C T IFNA13 Missense_Mutation p.R185K 0.06 tolerated(0.16) benign(0.001) TCGA-5L-AAT1-01 9 26904822 26904822 C G PLAA 3'UTR 0.14 TCGA-5L-AAT1-01 9 27329029 27329029 G A MOB3B 3'UTR 0.19 TCGA-5L-AAT1-01 9 32542896 32542896 C T TOPORS Missense_Mutation p.E543K 0.10 tolerated_low_confidence(0.16) possibly_damaging(0.53) TCGA-5L-AAT1-01 9 32787355 32787355 G C TMEM215 3'UTR 0.12 TCGA-5L-AAT1-01 9 33113041 33113041 C A B4GALT1 3'UTR 0.19 TCGA-5L-AAT1-01 9 33674636 33674636 C A PTENP1 RNA 0.09 TCGA-5L-AAT1-01 9 34372560 34372560 C T KIAA1161 Missense_Mutation p.D94N 0.29 tolerated(0.08) benign(0.002) TCGA-5L-AAT1-01 9 35042870 35042870 C G C9orf131 Missense_Mutation p.L82V 0.17 deleterious(0) probably_damaging(0.996) TCGA-5L-AAT1-01 9 35043267 35043267 C G C9orf131 Nonsense_Mutation p.S214* 0.23 TCGA-5L-AAT1-01 9 35043365 35043365 C G C9orf131 Missense_Mutation p.H247D 0.19 tolerated(0.2) benign(0.196) TCGA-5L-AAT1-01 9 35045603 35045603 C T C9orf131 Nonsense_Mutation p.Q993* 0.26 TCGA-5L-AAT1-01 9 35396933 35396933 G C UNC13B Missense_Mutation p.G1095A 0.17 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 9 35403904 35403904 G A UNC13B Silent p.R1550R 0.16 TCGA-5L-AAT1-01 9 35661841 35661841 G C ARHGEF39 3'UTR 0.15 TCGA-5L-AAT1-01 9 35957371 35957371 C G OR2S2 Missense_Mutation p.C242S 0.11 deleterious(0) probably_damaging(0.99) TCGA-5L-AAT1-01 9 36169685 36169685 G A CCIN Missense_Mutation p.M62I 0.27 tolerated(0.71) benign(0.001) TCGA-5L-AAT1-01 9 37762048 37762048 G C TRMT10B Missense_Mutation p.Q40H 0.19 tolerated(0.08) benign(0.127) TCGA-5L-AAT1-01 9 37762585 37762585 G C TRMT10B Missense_Mutation p.Q66H 0.20 deleterious(0.03) possibly_damaging(0.687) TCGA-5L-AAT1-01 9 40705905 40705905 G T SPATA31A3 Nonsense_Mutation p.E1188* 0.24 TCGA-5L-AAT1-01 9 43625423 43625423 G A SPATA31A6 Silent p.N1088N 0.17 TCGA-5L-AAT1-01 9 4665060 4665060 C T PPAPDC2 3'UTR 0.14 TCGA-5L-AAT1-01 9 4792982 4792982 G T RCL1 5'UTR 0.17 TCGA-5L-AAT1-01 9 5044450 5044450 G C JAK2 Missense_Mutation p.R133P 0.13 deleterious(0) probably_damaging(0.936) TCGA-5L-AAT1-01 9 6007299 6007299 C T KIAA2026 Silent p.L163L 0.21 TCGA-5L-AAT1-01 9 70999407 70999407 C G PGM5 Missense_Mutation p.S173C 0.21 deleterious(0.01) possibly_damaging(0.76) TCGA-5L-AAT1-01 9 7165312 7165312 C G KDM4C Silent p.L952L 0.25 TCGA-5L-AAT1-01 9 71851970 71851970 G A TJP2 Silent p.L730L 0.18 TCGA-5L-AAT1-01 9 71852871 71852871 G T TJP2 Missense_Mutation p.D784Y 0.17 deleterious(0) possibly_damaging(0.564) TCGA-5L-AAT1-01 9 72131655 72131655 C T APBA1 Missense_Mutation p.E158K 0.12 deleterious_low_confidence(0) benign(0.431) TCGA-5L-AAT1-01 9 734716 734716 G A KANK1 Intron 0.20 TCGA-5L-AAT1-01 9 75357357 75357357 C T TMC1 Intron 0.16 TCGA-5L-AAT1-01 9 78936516 78936516 G T PCSK5 Nonsense_Mutation p.E1328* 0.16 TCGA-5L-AAT1-01 9 84530738 84530738 C G SPATA31D5P RNA 0.16 TCGA-5L-AAT1-01 9 84532641 84532641 C G SPATA31D5P RNA 0.16 TCGA-5L-AAT1-01 9 84562493 84562493 G C RP11-383M4.6 Intron 0.13 TCGA-5L-AAT1-01 9 94519661 94519661 C T ROR2 Missense_Mutation p.R119Q 0.19 deleterious(0) probably_damaging(0.934) TCGA-5L-AAT1-01 9 96259750 96259750 C G FAM120A Intron 0.19 TCGA-5L-AAT1-01 9 97876984 97876984 G A FANCC Missense_Mutation p.R361W 0.09 deleterious(0.01) possibly_damaging(0.638) TCGA-5L-AAT1-01 9 98270464 98270464 G A PTCH1 Silent p.F60F 0.19 TCGA-5L-AAT1-01 9 99154693 99154693 C T ZNF367 Missense_Mutation p.E273K 0.17 deleterious(0.02) possibly_damaging(0.817) TCGA-5L-AAT1-01 X 102005660 102005660 G A BHLHB9 3'UTR 0.05 TCGA-5L-AAT1-01 X 102317915 102317915 C A BEX1 Silent p.L96L 0.23 TCGA-5L-AAT1-01 X 102941578 102941578 C A MORF4L2 5'Flank 0.21 TCGA-5L-AAT1-01 X 10427697 10427697 A T MID1 Nonsense_Mutation p.L479* 0.13 TCGA-5L-AAT1-01 X 105193686 105193686 G C NRK Missense_Mutation p.K1492N 0.19 deleterious(0) probably_damaging(0.928) TCGA-5L-AAT1-01 X 105855604 105855604 G A CXorf57 Silent p.T98T 0.22 TCGA-5L-AAT1-01 X 106844325 106844325 C G FRMPD3 Nonsense_Mutation p.S1052* 0.21 TCGA-5L-AAT1-01 X 110039013 110039013 C G CHRDL1 5'UTR 0.13 TCGA-5L-AAT1-01 X 111019065 111019065 G C TRPC5 3'UTR 0.19 TCGA-5L-AAT1-01 X 111698580 111698580 G A ZCCHC16 Silent p.L208L 0.20 TCGA-5L-AAT1-01 X 118724853 118724853 C T NKRF Missense_Mutation p.A194T 0.18 tolerated(0.48) benign(0.331) TCGA-5L-AAT1-01 X 118809539 118809539 G A SEPT6 Silent p.F41F 0.14 TCGA-5L-AAT1-01 X 118971752 118971752 C T UPF3B Missense_Mutation p.E424K 0.13 tolerated(0.33) benign(0.225) TCGA-5L-AAT1-01 X 122318207 122318207 G A GRIA3 5'UTR 0.21 TCGA-5L-AAT1-01 X 123190003 123190003 G A STAG2 Missense_Mutation p.E408K 0.16 tolerated(0.39) benign(0.076) TCGA-5L-AAT1-01 X 123205011 123205011 C T STAG2 Silent p.L791L 0.05 TCGA-5L-AAT1-01 X 128902630 128902630 G A XPNPEP2 3'UTR 0.17 TCGA-5L-AAT1-01 X 129629211 129629211 C T RP1-274L7.1 Intron 0.15 TCGA-5L-AAT1-01 X 131157431 131157431 G A MST4 5'UTR 0.20 TCGA-5L-AAT1-01 X 133903764 133903764 C T FAM122B 3'UTR 0.16 TCGA-5L-AAT1-01 X 134167232 134167232 G A FAM127A 3'UTR 0.17 TCGA-5L-AAT1-01 X 134427866 134427866 G A ZNF75D Silent p.I67I 0.14 TCGA-5L-AAT1-01 X 135825866 135825866 G A ARHGEF6 Missense_Mutation p.S180L 0.16 deleterious(0.03) possibly_damaging(0.612) TCGA-5L-AAT1-01 X 13635974 13635974 G A EGFL6 Missense_Mutation p.E302K 0.05 deleterious(0.03) benign(0.2) TCGA-5L-AAT1-01 X 147014076 147014076 C G FMR1 Missense_Mutation p.L255V 0.05 tolerated(0.08) possibly_damaging(0.845) TCGA-5L-AAT1-01 X 149999752 149999752 C T CD99L2 Missense_Mutation p.D28N 0.11 tolerated(0.24) benign(0.001) TCGA-5L-AAT1-01 X 1508519 1508519 C A SLC25A6 Missense_Mutation p.W71C 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-5L-AAT1-01 X 150911104 150911104 A G CNGA2 Silent p.R193R 0.14 TCGA-5L-AAT1-01 X 151304032 151304032 C G MAGEA10 Missense_Mutation p.E21Q 0.11 deleterious(0.01) benign(0.03) TCGA-5L-AAT1-01 X 151820008 151820008 C T GABRQ Silent p.I307I 0.06 TCGA-5L-AAT1-01 X 151899712 151899712 A G MAGEA12 3'UTR 0.20 TCGA-5L-AAT1-01 X 152227912 152227912 G - PNMA3 3'UTR 0.15 TCGA-5L-AAT1-01 X 153223338 153223338 C G HCFC1 Splice_Site p.X677_splice 0.17 TCGA-5L-AAT1-01 X 153289446 153289446 G A IRAK1 5'Flank 0.23 TCGA-5L-AAT1-01 X 153577023 153577023 C T FLNA 3'UTR 0.22 TCGA-5L-AAT1-01 X 153577049 153577049 C A FLNA 3'UTR 0.20 TCGA-5L-AAT1-01 X 154156934 154156934 G A F8 Nonsense_Mutation p.Q1711* 0.26 TCGA-5L-AAT1-01 X 155003609 155003609 G A SPRY3 Missense_Mutation p.D26N 0.21 tolerated(0.15) benign(0.101) TCGA-5L-AAT1-01 X 15554480 15554480 G A BMX Missense_Mutation p.M384I 0.18 tolerated(0.13) benign(0.002) TCGA-5L-AAT1-01 X 1714303 1714303 G A AKAP17A Silent p.L263L 0.18 TCGA-5L-AAT1-01 X 18674770 18674770 C T RS1 Intron 0.15 TCGA-5L-AAT1-01 X 19764468 19764468 G A SH3KBP1 Missense_Mutation p.S85F 0.06 tolerated(0.73) benign(0.003) TCGA-5L-AAT1-01 X 200977 200977 C T PLCXD1 Silent p.I41I 0.20 TCGA-5L-AAT1-01 X 24007075 24007075 G A KLHL15 Nonsense_Mutation p.Q260* 0.18 TCGA-5L-AAT1-01 X 24227026 24227026 C T ZFX Missense_Mutation p.S368F 0.08 tolerated(0.71) benign(0.399) TCGA-5L-AAT1-01 X 24231434 24231434 C T ZFX 3'UTR 0.14 TCGA-5L-AAT1-01 X 2867434 2867434 C T ARSE Silent p.L255L 0.20 TCGA-5L-AAT1-01 X 302653 302653 C G PPP2R3B Missense_Mutation p.K350N 0.20 deleterious(0) possibly_damaging(0.497) TCGA-5L-AAT1-01 X 30577679 30577679 G A CXorf21 Missense_Mutation p.S265L 0.20 deleterious(0.03) benign(0.104) TCGA-5L-AAT1-01 X 3235891 3235891 G A MXRA5 Missense_Mutation p.S1944L 0.33 tolerated(0.13) benign(0.105) TCGA-5L-AAT1-01 X 34149576 34149576 C T FAM47A Missense_Mutation p.E274K 0.17 tolerated(0.27) possibly_damaging(0.486) TCGA-5L-AAT1-01 X 34961920 34961920 C T FAM47B Silent p.P324P 0.19 TCGA-5L-AAT1-01 X 35971832 35971832 C T CXorf22 Silent p.I390I 0.17 TCGA-5L-AAT1-01 X 41076502 41076502 G A USP9X Missense_Mutation p.E2039K 0.16 tolerated(0.05) benign(0.003) TCGA-5L-AAT1-01 X 41193463 41193463 C G DDX3X 5'UTR 0.11 TCGA-5L-AAT1-01 X 43661474 43661474 C T MAOB Missense_Mutation p.E141K 0.19 tolerated(0.17) benign(0.041) TCGA-5L-AAT1-01 X 43817806 43817806 G C NDP Nonsense_Mutation p.S29* 0.15 TCGA-5L-AAT1-01 X 46918326 46918326 G C JADE3 Silent p.L773L 0.16 TCGA-5L-AAT1-01 X 46919455 46919455 C T JADE3 3'UTR 0.16 TCGA-5L-AAT1-01 X 47428120 47428120 G C ARAF Missense_Mutation p.K360N 0.23 deleterious(0) probably_damaging(0.994) TCGA-5L-AAT1-01 X 48163771 48163771 G A SSX9 RNA 0.20 TCGA-5L-AAT1-01 X 48209445 48209445 G A SSX3 Missense_Mutation p.S148F 0.17 tolerated(0.07) benign(0.072) TCGA-5L-AAT1-01 X 48762525 48762525 C T SLC35A2 Missense_Mutation p.E221K 0.14 deleterious(0) probably_damaging(1) TCGA-5L-AAT1-01 X 48814863 48814863 C G OTUD5 5'UTR 0.12 TCGA-5L-AAT1-01 X 49071579 49071579 G A CACNA1F Silent p.L1199L 0.12 TCGA-5L-AAT1-01 X 49137882 49137882 G A PPP1R3F Missense_Mutation p.E340K 0.22 deleterious(0.01) possibly_damaging(0.601) TCGA-5L-AAT1-01 X 50351174 50351174 G C SHROOM4 Missense_Mutation p.H990D 0.23 deleterious(0.02) probably_damaging(0.972) TCGA-5L-AAT1-01 X 50376830 50376830 G A SHROOM4 Missense_Mutation p.P748L 0.20 tolerated(0.16) benign(0.004) TCGA-5L-AAT1-01 X 51636769 51636769 G A MAGED1 5'UTR 0.18 TCGA-5L-AAT1-01 X 52896296 52896296 C T XAGE3 Intron 0.17 TCGA-5L-AAT1-01 X 62570329 62570329 C G SPIN4 Missense_Mutation p.E124Q 0.22 tolerated(0.1) possibly_damaging(0.768) TCGA-5L-AAT1-01 X 62974533 62974533 C T ARHGEF9 5'UTR 0.10 TCGA-5L-AAT1-01 X 63407394 63407394 C G AMER1 3'UTR 0.09 TCGA-5L-AAT1-01 X 63548760 63548760 G A MTMR8 Missense_Mutation p.S458F 0.16 deleterious(0) probably_damaging(0.998) TCGA-5L-AAT1-01 X 67718936 67718936 G A YIPF6 Missense_Mutation p.D10N 0.20 deleterious_low_confidence(0.04) benign(0) TCGA-5L-AAT1-01 X 69594039 69594039 G A KIF4A Silent p.L571L 0.19 TCGA-5L-AAT1-01 X 70321128 70321128 G A FOXO4 Missense_Mutation p.E350K 0.20 tolerated(0.26) benign(0.146) TCGA-5L-AAT1-01 X 70387523 70387523 G A NLGN3 Missense_Mutation p.E526K 0.20 deleterious(0) probably_damaging(0.999) TCGA-5L-AAT1-01 X 70503537 70503537 C T NONO 5'UTR 0.31 TCGA-5L-AAT1-01 X 70614038 70614038 C A TAF1 Missense_Mutation p.Q1137K 0.16 tolerated(0.06) probably_damaging(0.996) TCGA-5L-AAT1-01 X 70781718 70781718 G C OGT Missense_Mutation p.E649Q 0.13 deleterious(0) probably_damaging(0.972) TCGA-5L-AAT1-01 X 73524210 73524210 C T ZCCHC13 Nonsense_Mutation p.Q37* 0.07 TCGA-5L-AAT1-01 X 73524465 73524465 C T ZCCHC13 Nonsense_Mutation p.Q122* 0.08 TCGA-5L-AAT1-01 X 73962619 73962619 C A KIAA2022 Missense_Mutation p.K591N 0.14 deleterious(0) benign(0.283) TCGA-5L-AAT1-01 X 75393483 75393483 G A PBDC1 Missense_Mutation p.D32N 0.13 deleterious(0.05) benign(0.284) TCGA-5L-AAT1-01 X 76953113 76953113 G A ATRX Missense_Mutation p.S67F 0.04 benign(0.002) TCGA-5L-AAT1-01 X 77244802 77244802 G A ATP7A Silent p.Q228Q 0.17 TCGA-5L-AAT1-01 X 79698944 79698944 G A FAM46D Silent p.L302L 0.15 TCGA-5L-AAT1-01 X 83576923 83576923 C T HDX Missense_Mutation p.E683K 0.30 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-5L-AAT1-01 X 83616555 83616555 G A HDX Silent p.G457G 0.17 TCGA-5L-AAT1-01 X 92926717 92926717 C T NAP1L3 3'UTR 0.14 TCGA-5T-A9QA-01 10 75558999 75558999 G A ZSWIM8 Silent p.P1472P 0.70 TCGA-5T-A9QA-01 11 47594965 47594965 C T KBTBD4 Nonsense_Mutation p.W374* 0.19 TCGA-5T-A9QA-01 11 56468004 56468004 G T OR9G1 Missense_Mutation p.L47F 0.46 deleterious(0) probably_damaging(0.994) TCGA-5T-A9QA-01 11 75905734 75905734 C T WNT11 Silent p.A158A 0.16 TCGA-5T-A9QA-01 11 94906256 94906256 T A SESN3 3'UTR 0.61 TCGA-5T-A9QA-01 12 10151637 10151637 G A CLEC1B Silent p.S21S 0.51 TCGA-5T-A9QA-01 12 114377959 114377959 C T RBM19 Missense_Mutation p.A582T 0.22 deleterious(0.02) benign(0.027) TCGA-5T-A9QA-01 13 113873275 113873275 G C CUL4A Missense_Mutation p.C94S 0.69 deleterious(0) probably_damaging(0.989) TCGA-5T-A9QA-01 13 114780739 114780739 C T RASA3 Missense_Mutation p.V451I 0.14 tolerated(0.23) probably_damaging(0.997) TCGA-5T-A9QA-01 14 76447090 76447090 G T TGFB3 Missense_Mutation p.S49R 0.24 deleterious(0) probably_damaging(0.999) TCGA-5T-A9QA-01 15 20740237 20740237 T A GOLGA6L6 Missense_Mutation p.I505L 0.25 unknown(0) TCGA-5T-A9QA-01 15 27061558 27061558 G A GABRB3 Silent p.N68N 0.27 TCGA-5T-A9QA-01 15 80886027 80886027 G A ARNT2 Silent p.P714P 0.71 TCGA-5T-A9QA-01 16 84227714 84227714 G A ADAD2 Missense_Mutation p.R174H 0.66 deleterious_low_confidence(0.04) benign(0.026) TCGA-5T-A9QA-01 17 5487368 5487368 G A NLRP1 5'Flank 0.73 TCGA-5T-A9QA-01 17 73607692 73607692 G T MYO15B 3'Flank 0.45 TCGA-5T-A9QA-01 17 74008146 74008146 G A EVPL Nonsense_Mutation p.R800* 0.19 TCGA-5T-A9QA-01 19 15133840 15133840 C T CCDC105 Missense_Mutation p.P470L 0.42 deleterious(0) probably_damaging(0.94) TCGA-5T-A9QA-01 19 30934714 30934714 C T ZNF536 Missense_Mutation p.A82V 0.31 deleterious_low_confidence(0) benign(0.314) TCGA-5T-A9QA-01 19 39220029 39220029 A G ACTN4 Missense_Mutation p.Y898C 0.06 deleterious(0) probably_damaging(0.999) TCGA-5T-A9QA-01 19 6453992 6453992 C T SLC25A23 Silent p.E301E 0.24 TCGA-5T-A9QA-01 1 200708923 200708923 G T CAMSAP2 5'UTR 0.29 TCGA-5T-A9QA-01 1 202287193 202287193 G A LGR6 Missense_Mutation p.A588T 0.10 tolerated(0.26) benign(0.055) TCGA-5T-A9QA-01 1 205901935 205901935 C T SLC26A9 Missense_Mutation p.A91T 0.30 deleterious(0) possibly_damaging(0.842) TCGA-5T-A9QA-01 1 223568762 223568762 T C C1orf65 3'UTR 0.20 TCGA-5T-A9QA-01 22 18846379 18846379 C T BCRP7 5'Flank 0.35 TCGA-5T-A9QA-01 22 29704417 29704417 G A GAS2L1 Missense_Mutation p.G108S 0.27 tolerated(0.64) probably_damaging(0.997) TCGA-5T-A9QA-01 2 100170945 100170945 G A AFF3 Silent p.S1154S 0.19 TCGA-5T-A9QA-01 2 49190517 49190517 C T FSHR Silent p.V481V 0.27 TCGA-5T-A9QA-01 2 5835337 5835337 A T SOX11 3'UTR 0.24 TCGA-5T-A9QA-01 3 130360495 130360495 G A COL6A6 Splice_Site p.X1698_splice 0.27 TCGA-5T-A9QA-01 3 183904009 183904009 C T ABCF3 Missense_Mutation p.A5V 0.08 tolerated(0.4) benign(0.001) TCGA-5T-A9QA-01 3 184042709 184042709 G A EIF4G1 Missense_Mutation p.R895Q 0.67 tolerated(0.1) benign(0.283) TCGA-5T-A9QA-01 3 27418123 27418123 C T SLC4A7 3'UTR 0.17 TCGA-5T-A9QA-01 3 50294943 50294943 T C GNAI2 Missense_Mutation p.Y297H 0.38 deleterious(0.01) probably_damaging(0.937) TCGA-5T-A9QA-01 4 120169933 120169933 G A USP53 Missense_Mutation p.E90K 0.25 deleterious(0.01) probably_damaging(1) TCGA-5T-A9QA-01 4 126371228 126371228 G T FAT4 Silent p.V3019V 0.58 TCGA-5T-A9QA-01 4 147561300 147561300 C T POU4F2 Silent p.G190G 0.50 TCGA-5T-A9QA-01 4 159136417 159136417 C T TMEM144 Missense_Mutation p.P62S 0.31 tolerated(0.07) benign(0.391) TCGA-5T-A9QA-01 4 175412724 175412724 G A HPGD 3'UTR 0.58 TCGA-5T-A9QA-01 4 39448065 39448065 C T KLB Silent p.P573P 0.36 TCGA-5T-A9QA-01 4 91230659 91230659 A G CCSER1 Silent p.K408K 0.08 TCGA-5T-A9QA-01 6 31938891 31938891 C T DXO Silent p.T130T 0.42 TCGA-5T-A9QA-01 7 150498677 150498677 C T TMEM176A Silent p.A13A 0.42 TCGA-5T-A9QA-01 7 2952923 2952923 G A CARD11 Missense_Mutation p.S1006L 0.42 deleterious(0.01) benign(0.014) TCGA-5T-A9QA-01 7 30695332 30695332 C A CRHR2 Splice_Site p.X333_splice 0.33 TCGA-5T-A9QA-01 X 101768915 101768915 C T TMSB15A 3'UTR 0.40 TCGA-5T-A9QA-01 X 101970625 101970625 C G GPRASP2 Silent p.A276A 0.36 TCGA-5T-A9QA-01 X 102840536 102840536 G A TCEAL4 5'UTR 0.43 TCGA-5T-A9QA-01 X 114414281 114414281 G - LRCH2 Frame_Shift_Del p.Q219Nfs*12 0.10 TCGA-5T-A9QA-01 X 146340319 146340319 T A MIR509-2 RNA 0.37 TCGA-5T-A9QA-01 X 153695648 153695648 G A PLXNA3 Missense_Mutation p.R1092Q 0.39 tolerated(0.63) benign(0.001) TCGA-5T-A9QA-01 X 19387247 19387247 C A MAP3K15 Missense_Mutation p.G1164V 0.34 tolerated(0.33) benign(0.001) TCGA-5T-A9QA-01 X 52842172 52842172 T C XAGE5 Silent p.S27S 0.32 TCGA-A1-A0SB-01 10 116247760 116247760 T C ABLIM1 Missense_Mutation p.H333R 0.26 deleterious(0) probably_damaging(0.988) TCGA-A1-A0SB-01 12 43944926 43944926 T C ADAMTS20 Missense_Mutation p.Y80C 0.44 deleterious(0) probably_damaging(1) TCGA-A1-A0SB-01 12 49431403 49431404 - T KMT2D Frame_Shift_Ins p.P3246Tfs*5 0.20 TCGA-A1-A0SB-01 14 65266493 65266493 T C SPTB Missense_Mutation p.T346A 0.41 tolerated(0.28) benign(0.173) TCGA-A1-A0SB-01 16 88790292 88790292 T C PIEZO1 Missense_Mutation p.Q1441R 0.26 tolerated(0.25) possibly_damaging(0.78) TCGA-A1-A0SB-01 17 40272381 40272381 G A KAT2A Silent p.H157H 0.53 TCGA-A1-A0SB-01 19 42585066 42585066 G A ZNF574 Missense_Mutation p.D770N 0.32 deleterious(0.01) probably_damaging(0.945) TCGA-A1-A0SB-01 1 44476442 44476442 C T SLC6A9 Missense_Mutation p.G121D 0.28 deleterious(0) probably_damaging(1) TCGA-A1-A0SB-01 20 16730581 16730581 G A OTOR Missense_Mutation p.V97M 0.18 deleterious(0) benign(0.344) TCGA-A1-A0SB-01 22 23040479 23040479 C G IGLV2-23 Missense_Mutation p.T15R 0.52 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-A1-A0SB-01 2 25678299 25678299 C T DTNB Missense_Mutation p.V382M 0.47 deleterious(0.03) benign(0.379) TCGA-A1-A0SB-01 3 85932472 85932472 C T CADM2 Silent p.R83R 0.51 TCGA-A1-A0SB-01 6 135507043 135507044 - A MYB Frame_Shift_Ins p.Y10Ifs*2 0.17 TCGA-A1-A0SB-01 7 149129243 149129243 G A ZNF777 Missense_Mutation p.S707L 0.24 tolerated(0.13) probably_damaging(0.999) TCGA-A1-A0SB-01 7 150840441 150840441 C T AGAP3 Missense_Mutation p.R763C 0.39 deleterious(0.01) possibly_damaging(0.888) TCGA-A1-A0SB-01 7 75609837 75609837 C G POR Intron 0.45 TCGA-A1-A0SB-01 X 152684244 152684244 T G ZFP92 Missense_Mutation p.H49Q 0.06 deleterious(0.03) possibly_damaging(0.857) TCGA-A1-A0SB-01 X 78216689 78216689 C T P2RY10 Silent p.S224S 0.18 TCGA-A1-A0SD-01 10 61834851 61834851 G C ANK3 Missense_Mutation p.Q1930E 0.44 benign(0.01) TCGA-A1-A0SD-01 10 8115955 8115956 - CC GATA3 Frame_Shift_Ins p.S437Pfs*40 0.42 TCGA-A1-A0SD-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.06 TCGA-A1-A0SD-01 11 117063930 117063930 A G SIDT2 Missense_Mutation p.I723V 0.30 deleterious(0) possibly_damaging(0.861) TCGA-A1-A0SD-01 11 58381738 58381738 T A ZFP91 Missense_Mutation p.Y342N 0.37 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SD-01 12 112622620 112622620 C T HECTD4 Missense_Mutation p.D3238N 0.23 probably_damaging(0.996) TCGA-A1-A0SD-01 12 119554750 119554750 C A SRRM4 Missense_Mutation p.S125Y 0.06 deleterious_low_confidence(0) unknown(0) TCGA-A1-A0SD-01 12 39155920 39155920 T C CPNE8 Missense_Mutation p.Y225C 0.04 deleterious(0.02) possibly_damaging(0.882) TCGA-A1-A0SD-01 12 53581370 53581370 T C ZNF740 Missense_Mutation p.L193P 0.25 deleterious_low_confidence(0) benign(0.267) TCGA-A1-A0SD-01 12 9016572 9016572 C T A2ML1 Missense_Mutation p.H1229Y 0.09 deleterious(0) benign(0.028) TCGA-A1-A0SD-01 15 53907842 53907842 A T WDR72 Missense_Mutation p.I854K 0.25 tolerated(0.57) benign(0) TCGA-A1-A0SD-01 15 79749365 79749365 G A KIAA1024 Silent p.K292K 0.04 TCGA-A1-A0SD-01 17 33884688 33884688 G A SLFN14 Missense_Mutation p.R132W 0.28 tolerated(0.1) benign(0.28) TCGA-A1-A0SD-01 19 10226187 10226187 G A EIF3G Silent p.Y305Y 0.31 TCGA-A1-A0SD-01 19 51329938 51329938 C T KLK15 Missense_Mutation p.G186E 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-A1-A0SD-01 19 58773290 58773290 G C ZNF544 Missense_Mutation p.E440Q 0.23 tolerated(0.12) probably_damaging(0.99) TCGA-A1-A0SD-01 1 152777901 152777901 G A LCE1C Silent p.P18P 0.07 TCGA-A1-A0SD-01 1 152777903 152777903 G C LCE1C Missense_Mutation p.P18A 0.07 deleterious_low_confidence(0) unknown(0) TCGA-A1-A0SD-01 1 158054332 158054332 G A KIRREL Missense_Mutation p.R158Q 0.29 deleterious(0.03) benign(0.188) TCGA-A1-A0SD-01 1 160210108 160210108 C T DCAF8 Silent p.E34E 0.19 TCGA-A1-A0SD-01 1 223284687 223284688 - A TLR5 Frame_Shift_Ins p.P563Sfs*2 0.32 TCGA-A1-A0SD-01 1 95293148 95293148 G A SLC44A3 Missense_Mutation p.E122K 0.25 tolerated(0.28) benign(0.211) TCGA-A1-A0SD-01 20 17928176 17928178 CTG - SNX5 In_Frame_Del p.Q344del 0.24 TCGA-A1-A0SD-01 20 23420938 23420938 C T CSTL1 Silent p.L12L 0.11 TCGA-A1-A0SD-01 20 25755889 25755889 A T FAM182B Missense_Mutation p.C23S 0.44 tolerated_low_confidence(0.1) benign(0.3) TCGA-A1-A0SD-01 2 1546414 1546414 T C TPO 3'UTR 0.25 TCGA-A1-A0SD-01 2 170070247 170070247 T G LRP2 Missense_Mutation p.D1987A 0.11 possibly_damaging(0.839) TCGA-A1-A0SD-01 2 220479255 220479255 G A STK11IP Silent p.A963A 0.24 TCGA-A1-A0SD-01 4 15067943 15067943 A G CPEB2 Missense_Mutation p.H1015R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A1-A0SD-01 4 151821369 151821369 C A LRBA Missense_Mutation p.V586F 0.22 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SD-01 5 112364613 112364613 G A MCC Intron 0.24 TCGA-A1-A0SD-01 5 140209165 140209165 C T PCDHA6 Missense_Mutation p.R497W 0.27 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-A1-A0SD-01 6 152763259 152763259 G A SYNE1 Missense_Mutation p.T1320I 0.22 benign(0.439) TCGA-A1-A0SD-01 6 41712443 41712443 G A PGC Missense_Mutation p.R55C 0.28 tolerated(0.15) benign(0.339) TCGA-A1-A0SD-01 7 105636709 105636709 G A CDHR3 Missense_Mutation p.V208M 0.23 tolerated(0.1) possibly_damaging(0.463) TCGA-A1-A0SD-01 7 15240780 15240780 T A AGMO 3'UTR 0.21 TCGA-A1-A0SD-01 7 96339155 96339155 C A SHFM1 5'UTR 0.24 TCGA-A1-A0SD-01 8 121344960 121344960 G A COL14A1 Missense_Mutation p.A1591T 0.39 tolerated(0.05) benign(0.228) TCGA-A1-A0SD-01 8 55542731 55542748 TTTGAAATGCTTGGTCAA - RP1 In_Frame_Del p.F2097_Q2102del 0.26 TCGA-A1-A0SD-01 9 14737583 14737583 G A FREM1 Silent p.D2117D 0.31 TCGA-A1-A0SD-01 9 34564705 34564705 C T CNTFR Missense_Mutation p.G71S 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-A1-A0SD-01 X 153132281 153132281 C T L1CAM Missense_Mutation p.V752M 0.24 deleterious(0) probably_damaging(1) TCGA-A1-A0SD-01 X 23956735 23956735 G A CXorf58 Missense_Mutation p.R286H 0.20 deleterious(0.03) possibly_damaging(0.815) TCGA-A1-A0SD-01 X 41379771 41379771 T C CASK Missense_Mutation p.I890V 0.32 tolerated(1) benign(0.001) TCGA-A1-A0SE-01 10 30900888 30900888 G A LYZL2 Missense_Mutation p.S194F 0.07 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-A1-A0SE-01 10 96291053 96291053 A T TBC1D12 Missense_Mutation p.T699S 0.37 deleterious(0.01) probably_damaging(0.985) TCGA-A1-A0SE-01 11 66114207 66114207 C A B3GNT1 Missense_Mutation p.M270I 0.11 tolerated(0.18) benign(0.003) TCGA-A1-A0SE-01 11 92534379 92534379 C T FAT3 Missense_Mutation p.P2734S 0.06 benign(0.041) TCGA-A1-A0SE-01 13 79945989 79945990 - A RBM26 Frame_Shift_Ins p.Y135Lfs*5 0.08 TCGA-A1-A0SE-01 15 42054350 42054350 A G MGA Missense_Mutation p.K2512E 0.33 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SE-01 15 54306424 54306426 AAG - UNC13C In_Frame_Del p.K443del 0.19 TCGA-A1-A0SE-01 15 98513237 98513237 T C ARRDC4 Missense_Mutation p.M336T 0.12 tolerated(0.1) benign(0.11) TCGA-A1-A0SE-01 16 68844139 68844139 G A CDH1 Missense_Mutation p.E243K 0.30 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SE-01 19 20735296 20735296 C T ZNF737 Missense_Mutation p.V71I 0.10 tolerated(0.17) benign(0.009) TCGA-A1-A0SE-01 19 48044180 48044180 G A ZNF541 Missense_Mutation p.P811L 0.23 tolerated(0.1) benign(0.028) TCGA-A1-A0SE-01 19 9087224 9087224 C T MUC16 Missense_Mutation p.D1531N 0.21 unknown(0) TCGA-A1-A0SE-01 1 104093578 104093578 G A RNPC3 Silent p.L459L 0.09 TCGA-A1-A0SE-01 1 152085214 152085214 C T TCHH Missense_Mutation p.R160Q 0.08 unknown(0) TCGA-A1-A0SE-01 1 173725095 173725095 A G KLHL20 Silent p.L295L 0.20 TCGA-A1-A0SE-01 1 32678163 32678163 C T DCDC2B Silent p.V200V 0.19 TCGA-A1-A0SE-01 1 85656315 85656315 T C SYDE2 Missense_Mutation p.N289S 0.14 tolerated_low_confidence(0.11) possibly_damaging(0.471) TCGA-A1-A0SE-01 2 68765324 68765324 G A APLF Silent p.K375K 0.14 TCGA-A1-A0SE-01 3 169550926 169550926 G A LRRIQ4 Nonsense_Mutation p.W495* 0.11 TCGA-A1-A0SE-01 3 49066745 49066745 C T IMPDH2 Silent p.V13V 0.21 TCGA-A1-A0SE-01 3 66463429 66463429 A G LRIG1 Silent p.N219N 0.22 TCGA-A1-A0SE-01 3 88205481 88205481 A T C3orf38 Missense_Mutation p.H229L 0.15 deleterious(0) possibly_damaging(0.804) TCGA-A1-A0SE-01 6 131948806 131948806 C A MED23 Nonsense_Mutation p.E16* 0.31 TCGA-A1-A0SE-01 6 30587563 30587563 C T MRPS18B Missense_Mutation p.R89W 0.31 deleterious(0) possibly_damaging(0.77) TCGA-A1-A0SE-01 6 41754778 41754778 G A PRICKLE4 Missense_Mutation p.G356S 0.14 deleterious(0.02) probably_damaging(1) TCGA-A1-A0SE-01 7 134890705 134890705 T C WDR91 Missense_Mutation p.M234V 0.24 deleterious(0.04) benign(0.257) TCGA-A1-A0SE-01 7 151093204 151093204 C T WDR86 Silent p.Q128Q 0.20 TCGA-A1-A0SE-01 7 37936496 37936496 G T NME8 Silent p.L523L 0.16 TCGA-A1-A0SE-01 7 37936498 37936498 C T NME8 Missense_Mutation p.T524I 0.16 deleterious(0) probably_damaging(0.991) TCGA-A1-A0SE-01 8 57228816 57228816 G A SDR16C5 Missense_Mutation p.L31F 0.36 tolerated(0.31) benign(0.303) TCGA-A1-A0SE-01 8 63938756 63938756 C T GGH Missense_Mutation p.D154N 0.08 tolerated(1) benign(0.003) TCGA-A1-A0SE-01 8 77620129 77620129 G T ZFHX4 Missense_Mutation p.G980V 0.24 probably_damaging(0.979) TCGA-A1-A0SE-01 9 130712790 130712790 T A FAM102A Missense_Mutation p.E109V 0.19 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SE-01 9 130712791 130712791 C A FAM102A Nonsense_Mutation p.E109* 0.19 TCGA-A1-A0SE-01 9 98220334 98220334 G A PTCH1 Silent p.C1043C 0.14 TCGA-A1-A0SE-01 X 135290662 135290662 G A FHL1 Missense_Mutation p.D184N 0.17 deleterious(0) benign(0.2) TCGA-A1-A0SE-01 X 86087252 86087252 C A DACH2 3'UTR 0.22 TCGA-A1-A0SE-01 X 9659623 9659623 T C TBL1X Silent p.N207N 0.12 TCGA-A1-A0SF-01 10 104436533 104436533 C T ARL3 3'UTR 0.26 TCGA-A1-A0SF-01 10 121563758 121563758 T - INPP5F Frame_Shift_Del p.F398Sfs*20 0.16 TCGA-A1-A0SF-01 10 70100979 70100979 G A RUFY2 3'Flank 0.09 TCGA-A1-A0SF-01 11 119059385 119059385 G A PDZD3 Missense_Mutation p.E366K 0.19 tolerated(0.15) benign(0.438) TCGA-A1-A0SF-01 11 44129420 44129420 C T EXT2 Missense_Mutation p.S86L 0.12 tolerated(0.2) benign(0.109) TCGA-A1-A0SF-01 11 7672087 7672087 C T PPFIBP2 Missense_Mutation p.S713L 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-A1-A0SF-01 12 52700027 52700027 G A KRT86 Missense_Mutation p.A404T 0.33 deleterious(0.02) benign(0.16) TCGA-A1-A0SF-01 12 56492633 56492633 A G ERBB3 Missense_Mutation p.E928G 0.40 deleterious(0) probably_damaging(1) TCGA-A1-A0SF-01 12 6753643 6753643 C T ACRBP Missense_Mutation p.E202K 0.16 tolerated(0.34) benign(0.223) TCGA-A1-A0SF-01 12 70072563 70072563 C A BEST3 Nonsense_Mutation p.E198* 0.13 TCGA-A1-A0SF-01 12 88939633 88939633 G A KITLG Missense_Mutation p.L9F 0.18 deleterious(0.03) benign(0.005) TCGA-A1-A0SF-01 12 98995040 98995040 C T SLC25A3 Silent p.L303L 0.09 TCGA-A1-A0SF-01 13 25480363 25480363 G A CENPJ Nonsense_Mutation p.Q605* 0.19 TCGA-A1-A0SF-01 14 106733410 106733410 C T IGHV1-24 Missense_Mutation p.E29K 0.20 deleterious(0) probably_damaging(0.97) TCGA-A1-A0SF-01 14 23882971 23882971 C T MYH7 Silent p.T1929T 0.06 TCGA-A1-A0SF-01 14 32561422 32561422 G A ARHGAP5 Missense_Mutation p.S516N 0.33 deleterious(0.01) possibly_damaging(0.698) TCGA-A1-A0SF-01 14 36133961 36133961 C G RALGAPA1 Missense_Mutation p.E1233Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SF-01 15 68118729 68118729 C T SKOR1 Missense_Mutation p.A374V 0.24 deleterious_low_confidence(0.01) probably_damaging(0.924) TCGA-A1-A0SF-01 16 31051076 31051076 C T STX4 Silent p.I282I 0.07 TCGA-A1-A0SF-01 17 18682011 18682011 G T FBXW10 Missense_Mutation p.R853S 0.14 tolerated(0.06) benign(0.443) TCGA-A1-A0SF-01 17 43922887 43922887 C T SPPL2C Silent p.A205A 0.35 TCGA-A1-A0SF-01 18 40323522 40323522 C T RIT2 Missense_Mutation p.R197K 0.18 tolerated(0.39) benign(0.067) TCGA-A1-A0SF-01 19 13010461 13010461 G A GCDH 3'UTR 0.05 TCGA-A1-A0SF-01 19 23543097 23543097 G A ZNF91 Missense_Mutation p.S895L 0.36 deleterious(0) probably_damaging(0.972) TCGA-A1-A0SF-01 19 39805072 39805072 G A LRFN1 Missense_Mutation p.T302I 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-A1-A0SF-01 19 41594860 41594860 C T CYP2A13 Silent p.F69F 0.09 TCGA-A1-A0SF-01 19 9072222 9072222 C A MUC16 Missense_Mutation p.G5075V 0.20 unknown(0) TCGA-A1-A0SF-01 1 167097747 167097747 G A DUSP27 Missense_Mutation p.E1127K 0.19 tolerated(0.09) benign(0.424) TCGA-A1-A0SF-01 1 196670472 196670472 G A CFH Intron 0.18 TCGA-A1-A0SF-01 1 202743781 202743781 T C KDM5B Missense_Mutation p.H122R 0.13 tolerated(0.09) possibly_damaging(0.813) TCGA-A1-A0SF-01 1 207930908 207930908 G A CD46 Missense_Mutation p.D104N 0.08 tolerated(0.56) benign(0.015) TCGA-A1-A0SF-01 1 3599659 3599659 C T TP73 Missense_Mutation p.S34L 0.12 tolerated(0.26) benign(0.044) TCGA-A1-A0SF-01 1 6676836 6676836 A C PHF13 Missense_Mutation p.K20T 0.23 deleterious(0.01) possibly_damaging(0.722) TCGA-A1-A0SF-01 20 13695576 13695576 G C ESF1 Missense_Mutation p.S834C 0.04 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SF-01 20 52675209 52675209 C T BCAS1 Missense_Mutation p.E17K 0.07 tolerated(0.27) benign(0.311) TCGA-A1-A0SF-01 22 18018340 18018340 G A CECR2 Missense_Mutation p.V409I 0.11 tolerated(0.05) benign(0.221) TCGA-A1-A0SF-01 2 153591548 153591548 C T ARL6IP6 Silent p.F165F 0.13 TCGA-A1-A0SF-01 2 164468287 164468287 C A FIGN Missense_Mutation p.A19S 0.17 tolerated(0.22) benign(0.004) TCGA-A1-A0SF-01 2 172337576 172337576 G A DCAF17 Missense_Mutation p.M505I 0.13 tolerated(0.08) benign(0.058) TCGA-A1-A0SF-01 3 12858378 12858378 C T CAND2 Silent p.I649I 0.16 TCGA-A1-A0SF-01 3 129252558 129252558 C T RHO Silent p.A348A 0.17 TCGA-A1-A0SF-01 3 64619251 64619251 C T ADAMTS9 Missense_Mutation p.R691K 0.09 deleterious(0.05) benign(0.348) TCGA-A1-A0SF-01 4 100870052 100870052 G A H2AFZ Missense_Mutation p.R81C 0.14 deleterious(0.03) benign(0.081) TCGA-A1-A0SF-01 4 148579057 148579057 C T PRMT10 Missense_Mutation p.D406N 0.12 tolerated(0.07) possibly_damaging(0.582) TCGA-A1-A0SF-01 4 174254704 174254704 C T HMGB2 Missense_Mutation p.D33N 0.15 tolerated(0.2) benign(0.053) TCGA-A1-A0SF-01 4 183658227 183658227 T G TENM3 Silent p.V1078V 0.24 TCGA-A1-A0SF-01 4 84383743 84383743 G C FAM175A Missense_Mutation p.S370C 0.07 tolerated_low_confidence(0.18) benign(0.009) TCGA-A1-A0SF-01 5 177420032 177420032 C T PROP1 Missense_Mutation p.R120H 0.32 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SF-01 5 61643897 61643897 C T KIF2A Missense_Mutation p.S61L 0.17 tolerated(0.11) benign(0.061) TCGA-A1-A0SF-01 5 6491344 6491344 G A UBE2QL1 Missense_Mutation p.R123K 0.24 tolerated(0.94) benign(0.038) TCGA-A1-A0SF-01 6 117013507 117013507 G A KPNA5 Missense_Mutation p.D98N 0.18 tolerated(0.47) benign(0.007) TCGA-A1-A0SF-01 6 129722392 129722392 C T LAMA2 Silent p.S1823S 0.13 TCGA-A1-A0SF-01 6 37452937 37452937 G A CCDC167 Missense_Mutation p.R26W 0.14 deleterious(0.01) benign(0.021) TCGA-A1-A0SF-01 6 43018789 43018789 G A CUL7 Missense_Mutation p.R468W 0.11 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SF-01 6 74176211 74176211 G A MTO1 Splice_Site p.X140_splice 0.13 TCGA-A1-A0SF-01 7 116593630 116593630 C T ST7 Silent p.L12L 0.27 TCGA-A1-A0SF-01 7 131831430 131831430 C T PLXNA4 Missense_Mutation p.D1632N 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-A1-A0SF-01 7 151874026 151874026 C T KMT2C Missense_Mutation p.E2838K 0.08 benign(0.035) TCGA-A1-A0SF-01 7 151878577 151878577 G C KMT2C Nonsense_Mutation p.S2123* 0.08 TCGA-A1-A0SF-01 7 151879568 151879568 G A KMT2C Missense_Mutation p.L1793F 0.24 possibly_damaging(0.724) TCGA-A1-A0SF-01 7 76033760 76033760 G T SRCRB4D 5'UTR 0.18 TCGA-A1-A0SF-01 8 125081668 125081668 C G FER1L6 Silent p.L1262L 0.05 TCGA-A1-A0SF-01 9 35685479 35685479 C T TPM2 Silent p.L148L 0.09 TCGA-A1-A0SF-01 9 8471022 8471022 C T PTPRD Silent p.E1159E 0.13 TCGA-A1-A0SF-01 X 23018658 23018658 G A DDX53 Missense_Mutation p.E162K 0.18 tolerated(0.97) benign(0.006) TCGA-A1-A0SG-01 10 106121785 106121785 T C CCDC147 Missense_Mutation p.I99T 0.29 deleterious(0) possibly_damaging(0.691) TCGA-A1-A0SG-01 10 13852832 13852832 A G FRMD4A Missense_Mutation p.I63T 0.24 tolerated(0.05) possibly_damaging(0.652) TCGA-A1-A0SG-01 10 43292496 43292496 G T BMS1 Missense_Mutation p.A602S 0.10 tolerated(0.81) benign(0.001) TCGA-A1-A0SG-01 10 5488669 5488669 C T NET1 Intron 0.17 TCGA-A1-A0SG-01 10 71905831 71905831 G A TYSND1 Missense_Mutation p.S171L 0.33 tolerated(0.31) benign(0.002) TCGA-A1-A0SG-01 10 75406545 75406545 C T SYNPO2L Silent p.R955R 0.28 TCGA-A1-A0SG-01 12 16713405 16713405 G C LMO3 Missense_Mutation p.R114G 0.27 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SG-01 12 78569098 78569098 G A NAV3 Missense_Mutation p.R1665K 0.36 tolerated(0.26) probably_damaging(0.995) TCGA-A1-A0SG-01 12 88472999 88472999 C T CEP290 Missense_Mutation p.S1745N 0.40 probably_damaging(0.999) TCGA-A1-A0SG-01 15 89008087 89008087 G A MRPL46 Nonsense_Mutation p.R146* 0.27 TCGA-A1-A0SG-01 16 23768630 23768630 G A CHP2 Missense_Mutation p.V175M 0.24 tolerated(0.08) benign(0.002) TCGA-A1-A0SG-01 17 38991201 38991201 G A TMEM99 Missense_Mutation p.V145I 0.17 deleterious_low_confidence(0) benign(0.198) TCGA-A1-A0SG-01 17 4638456 4638456 T G CXCL16 Missense_Mutation p.I236L 0.50 tolerated(0.53) benign(0.002) TCGA-A1-A0SG-01 17 5392578 5392578 A T MIS12 Missense_Mutation p.L132F 0.39 deleterious(0.01) possibly_damaging(0.501) TCGA-A1-A0SG-01 17 62130251 62130251 G A ERN1 Silent p.L714L 0.44 TCGA-A1-A0SG-01 19 33639782 33639782 C T WDR88 Silent p.D215D 0.26 TCGA-A1-A0SG-01 1 17419026 17419026 G C PADI2 Missense_Mutation p.L178V 0.24 deleterious(0.03) probably_damaging(1) TCGA-A1-A0SG-01 1 34090712 34090712 G A CSMD2 Silent p.I1773I 0.24 TCGA-A1-A0SG-01 20 44645062 44645062 G C MMP9 3'UTR 0.35 TCGA-A1-A0SG-01 20 52192368 52192368 C A ZNF217 Missense_Mutation p.D979Y 0.31 deleterious(0) possibly_damaging(0.88) TCGA-A1-A0SG-01 21 41719645 41719645 G A DSCAM Missense_Mutation p.R388C 0.28 deleterious(0.04) probably_damaging(0.959) TCGA-A1-A0SG-01 22 18028506 18028506 C T CECR2 Missense_Mutation p.R1156C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-A1-A0SG-01 22 29694792 29694792 G C EWSR1 Missense_Mutation p.G501A 0.45 tolerated(0.14) unknown(0) TCGA-A1-A0SG-01 2 167263066 167263066 C T SCN7A Missense_Mutation p.R1358H 0.27 deleterious(0.02) benign(0.212) TCGA-A1-A0SG-01 2 54587645 54587645 T C C2orf73 Silent p.D270D 0.18 TCGA-A1-A0SG-01 2 89385160 89385160 G A IGKV3-15 Silent p.F9F 0.21 TCGA-A1-A0SG-01 3 7620374 7620374 C T GRM7 Missense_Mutation p.P594L 0.38 deleterious(0) possibly_damaging(0.691) TCGA-A1-A0SG-01 4 159640438 159640438 A C PPID Missense_Mutation p.I76S 0.28 deleterious(0) possibly_damaging(0.816) TCGA-A1-A0SG-01 5 118835164 118835164 C T HSD17B4 Silent p.P400P 0.29 TCGA-A1-A0SG-01 5 150922760 150922760 A T FAT2 Missense_Mutation p.V2643D 0.31 probably_damaging(0.979) TCGA-A1-A0SG-01 5 56178135 56178136 - A MAP3K1 Frame_Shift_Ins p.D1038Rfs*4 0.35 TCGA-A1-A0SG-01 8 128429049 128429049 C T POU5F1B Missense_Mutation p.P313L 0.10 tolerated(1) benign(0) TCGA-A1-A0SG-01 8 142176380 142176380 A G DENND3 Missense_Mutation p.M469V 0.08 deleterious(0.03) benign(0.175) TCGA-A1-A0SG-01 8 143695260 143695260 G A ARC Missense_Mutation p.R125C 0.29 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-A1-A0SG-01 9 18684728 18684728 G A ADAMTSL1 Missense_Mutation p.E502K 0.35 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SG-01 X 70361800 70361800 A G MED12 Missense_Mutation p.Q2159R 0.44 unknown(0) TCGA-A1-A0SH-01 10 15255676 15255676 G A FAM171A1 Silent p.P637P 0.21 TCGA-A1-A0SH-01 10 16979594 16979594 G A CUBN Missense_Mutation p.P1975S 0.23 tolerated(0.15) benign(0.15) TCGA-A1-A0SH-01 10 50599285 50599285 G C DRGX Missense_Mutation p.H24Q 0.29 deleterious_low_confidence(0.01) benign(0.013) TCGA-A1-A0SH-01 10 61965629 61965629 T C ANK3 Missense_Mutation p.H405R 0.16 probably_damaging(0.998) TCGA-A1-A0SH-01 10 74994996 74994996 G A FAM149B1 Missense_Mutation p.E508K 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-A1-A0SH-01 10 75541933 75541933 G T CHCHD1 Missense_Mutation p.G34W 0.17 deleterious(0) probably_damaging(0.949) TCGA-A1-A0SH-01 10 7605129 7605129 C T ITIH5 Missense_Mutation p.D916N 0.24 deleterious(0.02) probably_damaging(1) TCGA-A1-A0SH-01 10 96022290 96022323 TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG - PLCE1 Frame_Shift_Del p.I1285Sfs*13 0.16 TCGA-A1-A0SH-01 11 108383322 108383322 C T EXPH5 Missense_Mutation p.R971K 0.27 tolerated(1) benign(0.002) TCGA-A1-A0SH-01 11 17548582 17548582 C T USH1C Missense_Mutation p.G168S 0.17 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SH-01 11 28135038 28135038 C G METTL15 Missense_Mutation p.Q53E 0.20 tolerated_low_confidence(1) benign(0) TCGA-A1-A0SH-01 11 4673753 4673753 C T OR51E1 5'UTR 0.16 TCGA-A1-A0SH-01 11 47364637 47364637 G A MYBPC3 Missense_Mutation p.A429V 0.09 deleterious(0.04) benign(0.323) TCGA-A1-A0SH-01 11 57263602 57263602 G A SLC43A1 Silent p.I198I 0.16 TCGA-A1-A0SH-01 11 58920660 58920660 G A FAM111A Missense_Mutation p.E507K 0.22 tolerated(0.23) benign(0.123) TCGA-A1-A0SH-01 11 67763132 67763132 G A UNC93B1 Missense_Mutation p.A437V 0.33 tolerated(0.8) benign(0.001) TCGA-A1-A0SH-01 11 77774954 77774954 C G THRSP Silent p.P9P 0.21 TCGA-A1-A0SH-01 12 104460047 104460047 G A HCFC2 Missense_Mutation p.G89E 0.16 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SH-01 12 116408458 116408458 G A MED13L Missense_Mutation p.S2003L 0.16 deleterious(0) possibly_damaging(0.82) TCGA-A1-A0SH-01 12 56113352 56113352 G C BLOC1S1 Missense_Mutation p.E141Q 0.18 deleterious(0.04) possibly_damaging(0.562) TCGA-A1-A0SH-01 12 57548321 57548321 G A LRP1 Missense_Mutation p.G355E 0.06 probably_damaging(1) TCGA-A1-A0SH-01 12 9317862 9317862 G T PZP Missense_Mutation p.S787Y 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-A1-A0SH-01 14 106667991 106667991 T C IGHV3-20 Missense_Mutation p.K15E 0.24 tolerated_low_confidence(0.08) benign(0.005) TCGA-A1-A0SH-01 14 106791008 106791008 C A IGHV3-30 Silent p.A116A 0.08 TCGA-A1-A0SH-01 14 23540526 23540526 G A ACIN1 Intron 0.20 TCGA-A1-A0SH-01 14 24473924 24473924 G T DHRS4L2 Intron 0.25 TCGA-A1-A0SH-01 14 24652347 24652347 C G IPO4 Silent p.V752V 0.28 TCGA-A1-A0SH-01 14 45636520 45636520 C T FANCM Intron 0.23 TCGA-A1-A0SH-01 14 58605932 58605932 T C C14orf37 Missense_Mutation p.K49E 0.15 tolerated(0.14) possibly_damaging(0.486) TCGA-A1-A0SH-01 15 64204356 64204356 A T DAPK2 Missense_Mutation p.V300E 0.24 deleterious(0.05) benign(0.015) TCGA-A1-A0SH-01 15 77057342 77057342 C T SCAPER Missense_Mutation p.R562H 0.17 tolerated(0.11) probably_damaging(1) TCGA-A1-A0SH-01 15 85400295 85400295 G A ALPK3 Missense_Mutation p.E978K 0.31 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-A1-A0SH-01 15 86311940 86311940 A T KLHL25 Missense_Mutation p.W368R 0.25 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SH-01 15 90016021 90016021 G T RHCG Nonsense_Mutation p.S462* 0.19 TCGA-A1-A0SH-01 15 93616248 93616248 C T RGMA Silent p.V17V 0.15 TCGA-A1-A0SH-01 16 28506628 28506628 G T APOBR Missense_Mutation p.R89I 0.16 deleterious(0) probably_damaging(0.93) TCGA-A1-A0SH-01 16 70989287 70989287 C A HYDIN Nonsense_Mutation p.E2103* 0.11 TCGA-A1-A0SH-01 16 88927999 88927999 C T TRAPPC2L 3'UTR 0.33 TCGA-A1-A0SH-01 17 27225602 27225602 C G DHRS13 Missense_Mutation p.E331Q 0.15 tolerated_low_confidence(0.53) benign(0.016) TCGA-A1-A0SH-01 17 33476023 33476023 C T UNC45B Missense_Mutation p.S67F 0.06 deleterious(0) possibly_damaging(0.869) TCGA-A1-A0SH-01 17 36486443 36486443 C T GPR179 Silent p.K1003K 0.44 TCGA-A1-A0SH-01 17 38955885 38955885 C A KRT28 Missense_Mutation p.K87N 0.26 deleterious(0) probably_damaging(0.994) TCGA-A1-A0SH-01 17 41244748 41244748 G A BRCA1 Nonsense_Mutation p.Q934* 0.21 TCGA-A1-A0SH-01 17 47677806 47677806 G A SPOP Silent p.Y353Y 0.08 TCGA-A1-A0SH-01 17 5356907 5356907 T C DHX33 Silent p.P463P 0.26 TCGA-A1-A0SH-01 17 74005590 74005590 C T EVPL Silent p.E1232E 0.19 TCGA-A1-A0SH-01 17 76134257 76134257 C T TMC8 Silent p.F507F 0.14 TCGA-A1-A0SH-01 18 19154369 19154369 G A ESCO1 Nonsense_Mutation p.Q146* 0.26 TCGA-A1-A0SH-01 18 21757974 21757974 C T OSBPL1A Intron 0.25 TCGA-A1-A0SH-01 18 54424074 54424074 C G WDR7 Missense_Mutation p.I750M 0.22 tolerated(0.19) benign(0.111) TCGA-A1-A0SH-01 18 6837365 6837365 G C ARHGAP28 Missense_Mutation p.K6N 0.23 deleterious(0) probably_damaging(0.954) TCGA-A1-A0SH-01 19 14507159 14507159 G C CD97 Missense_Mutation p.D118H 0.21 deleterious(0.04) possibly_damaging(0.887) TCGA-A1-A0SH-01 19 14730096 14730096 G C EMR3 3'UTR 0.20 TCGA-A1-A0SH-01 19 38379723 38379723 G T WDR87 Missense_Mutation p.Q1491K 0.18 benign(0.164) TCGA-A1-A0SH-01 19 41816184 41816184 G A CCDC97 5'UTR 0.23 TCGA-A1-A0SH-01 19 46094651 46094651 G C GPR4 Silent p.L158L 0.17 TCGA-A1-A0SH-01 19 51274646 51274646 C A GPR32 Missense_Mutation p.S263R 0.16 deleterious(0.04) possibly_damaging(0.837) TCGA-A1-A0SH-01 19 58489941 58489941 T C ZNF606 Missense_Mutation p.T703A 0.51 deleterious(0) probably_damaging(0.922) TCGA-A1-A0SH-01 1 149902642 149902642 C T MTMR11 Intron 0.21 TCGA-A1-A0SH-01 1 155254545 155254545 G A HCN3 Silent p.E362E 0.29 TCGA-A1-A0SH-01 1 156905713 156905713 C T ARHGEF11 3'UTR 0.19 TCGA-A1-A0SH-01 1 196285071 196285071 C A KCNT2 Missense_Mutation p.D812Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SH-01 1 204228506 204228506 C T PLEKHA6 Missense_Mutation p.R296Q 0.10 tolerated(0.08) benign(0.011) TCGA-A1-A0SH-01 1 205272579 205272579 C T NUAK2 Silent p.%3D 0.12 TCGA-A1-A0SH-01 1 205494302 205494302 G C CDK18 Silent p.V175V 0.26 TCGA-A1-A0SH-01 1 216420207 216420207 G A USH2A Silent p.L843L 0.14 TCGA-A1-A0SH-01 1 237868586 237868586 C G RYR2 Missense_Mutation p.L3175V 0.37 benign(0.399) TCGA-A1-A0SH-01 1 247040513 247040513 C A AHCTF1 Nonsense_Mutation p.E927* 0.19 TCGA-A1-A0SH-01 1 28562879 28562915 ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG - ATPIF1 Frame_Shift_Del p.N32Mfs*27 0.37 TCGA-A1-A0SH-01 1 41976090 41976090 G A HIVEP3 3'UTR 0.22 TCGA-A1-A0SH-01 1 51754571 51754571 G C TTC39A Missense_Mutation p.A521G 0.18 tolerated(0.82) benign(0.008) TCGA-A1-A0SH-01 1 53580580 53580580 G A SLC1A7 Missense_Mutation p.A94V 0.09 tolerated(1) possibly_damaging(0.487) TCGA-A1-A0SH-01 20 47258785 47258785 G C PREX1 Missense_Mutation p.I1232M 0.15 deleterious(0.01) possibly_damaging(0.77) TCGA-A1-A0SH-01 21 30439299 30439299 C T CCT8 Missense_Mutation p.E159K 0.21 tolerated(0.08) benign(0.025) TCGA-A1-A0SH-01 22 35783012 35783012 C A HMOX1 Missense_Mutation p.S160Y 0.22 deleterious(0) probably_damaging(0.965) TCGA-A1-A0SH-01 22 38875700 38875700 C G KDELR3 Missense_Mutation p.L99V 0.22 tolerated(0.86) benign(0.005) TCGA-A1-A0SH-01 22 44968081 44968081 G C LINC00207 RNA 0.29 TCGA-A1-A0SH-01 22 46631235 46631237 GCT - PPARA In_Frame_Del p.L456del 0.20 TCGA-A1-A0SH-01 2 131904378 131904378 G A PLEKHB2 3'UTR 0.24 TCGA-A1-A0SH-01 2 160585678 160585678 G C MARCH7 Missense_Mutation p.E49Q 0.32 tolerated(0.38) possibly_damaging(0.533) TCGA-A1-A0SH-01 2 223065778 223065778 G A PAX3 3'UTR 0.20 TCGA-A1-A0SH-01 2 228563717 228563717 G C SLC19A3 Silent p.L238L 0.22 TCGA-A1-A0SH-01 2 286186 286186 G C FAM150B Missense_Mutation p.P109A 0.19 tolerated(0.11) possibly_damaging(0.79) TCGA-A1-A0SH-01 2 54874337 54874337 G A SPTBN1 Missense_Mutation p.E1646K 0.23 tolerated(0.26) benign(0.155) TCGA-A1-A0SH-01 3 119120669 119120669 G A ARHGAP31 Missense_Mutation p.G357E 0.15 deleterious(0.04) probably_damaging(1) TCGA-A1-A0SH-01 3 121356063 121356063 C G HCLS1 Missense_Mutation p.K165N 0.10 deleterious(0.01) unknown(0) TCGA-A1-A0SH-01 3 121415260 121415260 G T GOLGB1 Silent p.V1370V 0.18 TCGA-A1-A0SH-01 3 188327441 188327441 G C LPP Missense_Mutation p.G308R 0.11 tolerated(0.11) probably_damaging(1) TCGA-A1-A0SH-01 3 3078931 3078931 G C CNTN4 Missense_Mutation p.E671Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-A1-A0SH-01 3 38126916 38126916 G A DLEC1 Silent p.R471R 0.08 TCGA-A1-A0SH-01 3 42826747 42826747 G C HIGD1A 3'UTR 0.10 TCGA-A1-A0SH-01 3 48612826 48612826 G A COL7A1 Silent p.P2042P 0.15 TCGA-A1-A0SH-01 3 57131808 57131808 G A IL17RD Silent p.A641A 0.29 TCGA-A1-A0SH-01 4 129792615 129792615 C G JADE1 Missense_Mutation p.S576C 0.20 deleterious(0.01) probably_damaging(0.922) TCGA-A1-A0SH-01 4 169589516 169589516 G C PALLD Missense_Mutation p.E362Q 0.19 tolerated(0.14) probably_damaging(0.991) TCGA-A1-A0SH-01 4 1950275 1950275 G T WHSC1 Intron 0.20 TCGA-A1-A0SH-01 4 54243868 54243868 C T FIP1L1 5'UTR 0.16 TCGA-A1-A0SH-01 5 110097179 110097179 T A SLC25A46 Silent p.I318I 0.10 TCGA-A1-A0SH-01 5 132197631 132197631 G C GDF9 Missense_Mutation p.L339V 0.14 deleterious(0.01) possibly_damaging(0.802) TCGA-A1-A0SH-01 5 134785234 134785234 G T TIFAB Missense_Mutation p.S132R 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-A1-A0SH-01 5 41934239 41934239 G T FBXO4 Nonsense_Mutation p.E243* 0.22 TCGA-A1-A0SH-01 5 70858273 70858273 G C BDP1 Missense_Mutation p.E2557Q 0.14 deleterious(0) benign(0.214) TCGA-A1-A0SH-01 5 80422981 80422981 A G RASGRF2 Silent p.P895P 0.08 TCGA-A1-A0SH-01 6 109770913 109770913 C G MICAL1 Missense_Mutation p.D461H 0.23 deleterious(0) probably_damaging(0.919) TCGA-A1-A0SH-01 6 17551770 17551770 G C CAP2 Missense_Mutation p.D429H 0.17 deleterious(0.04) benign(0.133) TCGA-A1-A0SH-01 6 25776822 25776822 G C SLC17A4 Splice_Site p.X330_splice 0.19 TCGA-A1-A0SH-01 6 2833888 2833888 T C SERPINB1 Missense_Mutation p.N365S 0.05 tolerated(0.07) possibly_damaging(0.609) TCGA-A1-A0SH-01 6 30954351 30954351 C A MUC21 Missense_Mutation p.S133R 0.22 deleterious(0.04) unknown(0) TCGA-A1-A0SH-01 6 38830152 38830152 G T DNAH8 Missense_Mutation p.M1859I 0.17 probably_damaging(1) TCGA-A1-A0SH-01 6 4032011 4032011 C T PRPF4B Missense_Mutation p.S87F 0.18 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-A1-A0SH-01 6 54791317 54791317 C T FAM83B Missense_Mutation p.S198L 0.22 deleterious(0) benign(0.004) TCGA-A1-A0SH-01 7 107807363 107807363 C T NRCAM Intron 0.21 TCGA-A1-A0SH-01 7 117865025 117865025 C G ANKRD7 Missense_Mutation p.I47M 0.25 deleterious(0.01) benign(0.057) TCGA-A1-A0SH-01 7 150706129 150706129 G C NOS3 Missense_Mutation p.E742Q 0.19 tolerated(0.52) benign(0.008) TCGA-A1-A0SH-01 7 21940974 21940974 T A DNAH11 3'UTR 0.31 TCGA-A1-A0SH-01 7 65546799 65546799 C T ASL Missense_Mutation p.L8F 0.24 deleterious(0) possibly_damaging(0.899) TCGA-A1-A0SH-01 7 72957910 72957910 G A BCL7B Missense_Mutation p.S78L 0.21 tolerated(0.34) benign(0.05) TCGA-A1-A0SH-01 7 75442638 75442638 G A CCL24 Silent p.L59L 0.25 TCGA-A1-A0SH-01 8 121209170 121209170 G C COL14A1 Missense_Mutation p.E193Q 0.23 tolerated(0.1) possibly_damaging(0.707) TCGA-A1-A0SH-01 8 139164359 139164359 C T FAM135B Missense_Mutation p.D787N 0.09 deleterious(0.04) benign(0.146) TCGA-A1-A0SH-01 8 25364913 25364913 C T CDCA2 Missense_Mutation p.P911S 0.20 deleterious(0.01) probably_damaging(0.941) TCGA-A1-A0SH-01 8 2967831 2967831 G A CSMD1 Nonsense_Mutation p.Q2153* 0.23 TCGA-A1-A0SH-01 8 36663872 36663872 C T KCNU1 Missense_Mutation p.S185F 0.17 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SH-01 8 38175389 38175389 G A WHSC1L1 Intron 0.25 TCGA-A1-A0SH-01 8 59405044 59405044 G C CYP7A1 Silent p.L361L 0.19 TCGA-A1-A0SH-01 8 77616522 77616522 G A ZFHX4 Missense_Mutation p.E67K 0.17 possibly_damaging(0.486) TCGA-A1-A0SH-01 8 87242366 87242366 T G SLC7A13 Silent p.G47G 0.32 TCGA-A1-A0SH-01 9 131671269 131671269 C G LRRC8A Missense_Mutation p.S609C 0.21 deleterious(0) probably_damaging(0.969) TCGA-A1-A0SH-01 9 27169623 27169623 C T TEK Silent p.V208V 0.26 TCGA-A1-A0SH-01 X 103267770 103267770 C A H2BFWT Nonsense_Mutation p.E155* 0.16 TCGA-A1-A0SH-01 X 106310665 106310665 C T RBM41 3'UTR 0.21 TCGA-A1-A0SH-01 X 107978508 107978508 G C IRS4 Missense_Mutation p.S356C 0.25 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SH-01 X 108911440 108911440 C T ACSL4 Missense_Mutation p.G443E 0.24 deleterious(0) probably_damaging(1) TCGA-A1-A0SH-01 X 147009856 147009856 A C FMR1 Missense_Mutation p.N72T 0.05 tolerated(0.05) possibly_damaging(0.784) TCGA-A1-A0SH-01 X 149828220 149828220 G C MTM1 Missense_Mutation p.M448I 0.18 tolerated(0.37) benign(0.004) TCGA-A1-A0SH-01 X 151900419 151900419 C T MAGEA12 Missense_Mutation p.E128K 0.18 tolerated(0.06) possibly_damaging(0.868) TCGA-A1-A0SH-01 X 31792151 31792151 C T DMD Missense_Mutation p.D2490N 0.12 possibly_damaging(0.728) TCGA-A1-A0SH-01 X 69177163 69177163 G A EDA Intron 0.17 TCGA-A1-A0SH-01 X 71525260 71525260 C T CITED1 5'UTR 0.18 TCGA-A1-A0SH-01 X 74519698 74519698 C T UPRT Missense_Mutation p.R231W 0.10 tolerated(0.06) benign(0.057) TCGA-A1-A0SH-01 X 85403921 85403921 C G DACH2 Silent p.L99L 0.13 TCGA-A1-A0SI-01 10 103987420 103987420 C G ELOVL3 Missense_Mutation p.L47V 0.24 tolerated(0.14) benign(0.146) TCGA-A1-A0SI-01 10 1130340 1130340 C T WDR37 Intron 0.30 TCGA-A1-A0SI-01 10 115614796 115614796 C T NHLRC2 Silent p.P55P 0.12 TCGA-A1-A0SI-01 10 115910964 115910964 C G C10orf118 Missense_Mutation p.E259Q 0.16 tolerated(0.11) benign(0.201) TCGA-A1-A0SI-01 10 124671228 124671228 C G FAM24A Silent p.L26L 0.20 TCGA-A1-A0SI-01 10 124753897 124753897 G C IKZF5 Missense_Mutation p.P220R 0.26 tolerated(0.21) possibly_damaging(0.656) TCGA-A1-A0SI-01 10 15255759 15255759 C T FAM171A1 Missense_Mutation p.E610K 0.45 deleterious(0.03) benign(0.287) TCGA-A1-A0SI-01 10 5011086 5011086 G C AKR1C1 Missense_Mutation p.E174Q 0.19 deleterious(0) probably_damaging(0.977) TCGA-A1-A0SI-01 10 73563078 73563078 C G CDH23 Silent p.L351L 0.28 TCGA-A1-A0SI-01 10 76790587 76790587 T A KAT6B Missense_Mutation p.M2002K 0.30 probably_damaging(0.962) TCGA-A1-A0SI-01 10 94100533 94100533 G C MARCH5 Silent p.V114V 0.09 TCGA-A1-A0SI-01 10 97918159 97918159 G A ZNF518A RNA 0.40 TCGA-A1-A0SI-01 11 113076802 113076802 C T NCAM1 Silent p.I235I 0.16 TCGA-A1-A0SI-01 11 113846004 113846004 C T HTR3A 5'UTR 0.52 TCGA-A1-A0SI-01 11 117062717 117062717 C T SIDT2 Missense_Mutation p.S620F 0.24 deleterious(0.01) possibly_damaging(0.819) TCGA-A1-A0SI-01 11 119215369 119215369 C T MFRP Missense_Mutation p.E291K 0.32 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SI-01 11 122709265 122709265 G C CRTAM Missense_Mutation p.R4T 0.17 tolerated(0.08) benign(0.005) TCGA-A1-A0SI-01 11 32956104 32956104 G T QSER1 Missense_Mutation p.E971D 0.45 tolerated_low_confidence(0.22) benign(0.009) TCGA-A1-A0SI-01 11 33564822 33564822 G C KIAA1549L Missense_Mutation p.K274N 0.35 deleterious_low_confidence(0.05) benign(0.209) TCGA-A1-A0SI-01 11 55999596 55999596 G T OR5T2 Missense_Mutation p.H356N 0.23 tolerated_low_confidence(0.06) benign(0) TCGA-A1-A0SI-01 11 57982600 57982600 G A OR1S1 Silent p.L128L 0.20 TCGA-A1-A0SI-01 11 62285191 62285191 G A AHNAK Silent p.I5566I 0.15 TCGA-A1-A0SI-01 11 62564681 62564681 C G NXF1 Missense_Mutation p.K384N 0.42 deleterious(0) possibly_damaging(0.79) TCGA-A1-A0SI-01 11 64029421 64029421 C G PLCB3 Intron 0.42 TCGA-A1-A0SI-01 11 72295773 72295773 C T PDE2A Splice_Site p.X454_splice 0.11 TCGA-A1-A0SI-01 11 7324494 7324494 G T SYT9 Missense_Mutation p.D124Y 0.28 deleterious(0) possibly_damaging(0.629) TCGA-A1-A0SI-01 11 76257017 76257017 G C C11orf30 Missense_Mutation p.L1150F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.686) TCGA-A1-A0SI-01 11 82643268 82643268 G A C11orf82 Nonsense_Mutation p.W296* 0.33 TCGA-A1-A0SI-01 11 9834112 9834112 C T SBF2 Silent p.L1374L 0.23 TCGA-A1-A0SI-01 12 104337515 104337515 G C HSP90B1 Splice_Site p.X631_splice 0.23 TCGA-A1-A0SI-01 12 112616744 112616744 T C HECTD4 Missense_Mutation p.N3639S 0.19 possibly_damaging(0.777) TCGA-A1-A0SI-01 12 118511688 118511688 C T VSIG10 Silent p.L345L 0.24 TCGA-A1-A0SI-01 12 118852239 118852239 C G SUDS3 3'UTR 0.26 TCGA-A1-A0SI-01 12 39716479 39716479 A G KIF21A Missense_Mutation p.I1221T 0.14 tolerated(0.39) benign(0.002) TCGA-A1-A0SI-01 12 52775231 52775231 C G KRT84 Missense_Mutation p.D331H 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-A1-A0SI-01 12 5848485 5848485 C G ANO2 Missense_Mutation p.E474Q 0.29 deleterious(0) benign(0.132) TCGA-A1-A0SI-01 12 64825441 64825441 C G XPOT Silent p.L700L 0.27 TCGA-A1-A0SI-01 12 66800072 66800072 C G GRIP1 Missense_Mutation p.D607H 0.19 tolerated(0.05) benign(0.249) TCGA-A1-A0SI-01 12 6932864 6932864 C G GPR162 5'UTR 0.20 TCGA-A1-A0SI-01 12 85285902 85285902 G A SLC6A15 5'UTR 0.12 TCGA-A1-A0SI-01 13 103510687 103510687 C T BIVM-ERCC5 Silent p.P623P 0.38 TCGA-A1-A0SI-01 13 20978199 20978199 G C CRYL1 3'UTR 0.55 TCGA-A1-A0SI-01 13 26155956 26155956 G C ATP8A2 Splice_Site p.X670_splice 0.38 TCGA-A1-A0SI-01 13 48941691 48941691 G A RB1 Missense_Mutation p.R334K 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-A1-A0SI-01 13 49039501 49039501 C G RB1 Nonsense_Mutation p.S829* 0.21 TCGA-A1-A0SI-01 14 22965893 22965893 G C TRAJ42 Missense_Mutation p.G8A 0.24 unknown(0) TCGA-A1-A0SI-01 14 51707049 51707049 C G TMX1 Silent p.V13V 0.21 TCGA-A1-A0SI-01 14 61186663 61186663 C G SIX4 Missense_Mutation p.R455T 0.20 tolerated(0.36) probably_damaging(0.983) TCGA-A1-A0SI-01 14 64679723 64679723 G T SYNE2 Silent p.P6352P 0.17 TCGA-A1-A0SI-01 14 65392796 65392796 C T CHURC1-FNTB Nonsense_Mutation p.Q83* 0.19 TCGA-A1-A0SI-01 14 68029300 68029300 C A PLEKHH1 Missense_Mutation p.P318T 0.35 deleterious(0.01) possibly_damaging(0.842) TCGA-A1-A0SI-01 14 70633483 70633483 G A SLC8A3 Silent p.L553L 0.15 TCGA-A1-A0SI-01 14 75285000 75285000 G T YLPM1 Missense_Mutation p.D2005Y 0.13 probably_damaging(0.994) TCGA-A1-A0SI-01 14 75355833 75355833 G A DLST Missense_Mutation p.R61K 0.16 tolerated(0.28) benign(0) TCGA-A1-A0SI-01 14 75356620 75356620 G A DLST Missense_Mutation p.E99K 0.24 tolerated(0.14) possibly_damaging(0.85) TCGA-A1-A0SI-01 15 23052645 23052645 G A NIPA1 Missense_Mutation p.S143F 0.23 deleterious(0) possibly_damaging(0.601) TCGA-A1-A0SI-01 15 28408363 28408363 C T HERC2 Silent p.L3541L 0.26 TCGA-A1-A0SI-01 15 28474383 28474383 G A HERC2 Nonsense_Mutation p.R1744* 0.16 TCGA-A1-A0SI-01 15 31196869 31196869 G A FAN1 Translation_Start_Site p.M1? 0.43 tolerated_low_confidence(0.22) benign(0.003) TCGA-A1-A0SI-01 15 43486649 43486649 G A CCNDBP1 Missense_Mutation p.E320K 0.25 deleterious(0.02) possibly_damaging(0.897) TCGA-A1-A0SI-01 15 55669182 55669182 G C CCPG1 Missense_Mutation p.S140C 0.28 tolerated(0.17) probably_damaging(0.996) TCGA-A1-A0SI-01 15 89400566 89400566 G C ACAN Missense_Mutation p.E1584Q 0.23 tolerated(0.53) possibly_damaging(0.889) TCGA-A1-A0SI-01 16 10524477 10524477 G C ATF7IP2 5'UTR 0.10 TCGA-A1-A0SI-01 16 20548422 20548422 C G ACSM2B 3'UTR 0.38 TCGA-A1-A0SI-01 16 24801494 24801494 G C TNRC6A Missense_Mutation p.E511Q 0.09 tolerated(0.13) probably_damaging(0.917) TCGA-A1-A0SI-01 16 58714137 58714137 C G SLC38A7 5'UTR 0.33 TCGA-A1-A0SI-01 16 66947420 66947420 C G CDH16 Missense_Mutation p.E293Q 0.20 tolerated(0.09) benign(0.174) TCGA-A1-A0SI-01 16 67918001 67918001 C T EDC4 Missense_Mutation p.R1386W 0.44 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SI-01 16 68265592 68265592 C G ESRP2 Missense_Mutation p.L435F 0.18 deleterious(0) possibly_damaging(0.807) TCGA-A1-A0SI-01 16 72831445 72831445 C T ZFHX3 Silent p.R1712R 0.45 TCGA-A1-A0SI-01 16 8857982 8857982 G A ABAT Silent p.E141E 0.20 TCGA-A1-A0SI-01 17 29508478 29508478 C T NF1 Nonsense_Mutation p.Q209* 0.14 TCGA-A1-A0SI-01 17 33768152 33768152 G C SLFN13 Nonsense_Mutation p.S719* 0.30 TCGA-A1-A0SI-01 17 40817562 40817562 C T TUBG2 Silent p.F225F 0.41 TCGA-A1-A0SI-01 17 40826429 40826429 T C PLEKHH3 Splice_Site p.X55_splice 0.45 TCGA-A1-A0SI-01 17 41276089 41276089 C G BRCA1 Missense_Mutation p.E9Q 0.26 tolerated(0.1) probably_damaging(0.967) TCGA-A1-A0SI-01 17 42739711 42739711 G A C17orf104 Silent p.Q77Q 0.44 TCGA-A1-A0SI-01 17 46136365 46136365 C G NFE2L1 Missense_Mutation p.Q561E 0.56 tolerated(1) benign(0.005) TCGA-A1-A0SI-01 17 66902212 66902212 C G ABCA8 Missense_Mutation p.E751Q 0.62 deleterious(0.02) possibly_damaging(0.468) TCGA-A1-A0SI-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.30 tolerated(0.11) benign(0.308) TCGA-A1-A0SI-01 17 76991123 76991123 G A CANT1 Missense_Mutation p.A271V 0.48 tolerated(0.13) benign(0.013) TCGA-A1-A0SI-01 17 80049393 80049393 G A FASN Silent p.N399N 0.45 TCGA-A1-A0SI-01 18 21860842 21860842 C G OSBPL1A Missense_Mutation p.L415F 0.10 tolerated(0.07) benign(0.302) TCGA-A1-A0SI-01 19 10217225 10217225 G C PPAN Missense_Mutation p.E23Q 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-A1-A0SI-01 19 10690389 10690389 C T AP1M2 Intron 0.34 TCGA-A1-A0SI-01 19 12760743 12760743 C A MAN2B1 Nonsense_Mutation p.E751* 0.38 TCGA-A1-A0SI-01 19 17654376 17654376 G A FAM129C Missense_Mutation p.R528Q 0.20 tolerated(0.52) benign(0.056) TCGA-A1-A0SI-01 19 17722612 17722612 G A UNC13A Silent p.F1537F 0.27 TCGA-A1-A0SI-01 19 19790351 19790351 C G ZNF101 Missense_Mutation p.Q185E 0.19 deleterious(0.02) possibly_damaging(0.665) TCGA-A1-A0SI-01 19 20228673 20228673 G A ZNF90 Missense_Mutation p.E104K 0.23 tolerated(0.62) benign(0.026) TCGA-A1-A0SI-01 19 3179900 3179900 G A S1PR4 Silent p.R370R 0.29 TCGA-A1-A0SI-01 19 35837719 35837719 A G CD22 3'UTR 0.30 TCGA-A1-A0SI-01 19 36362821 36362821 G A APLP1 Missense_Mutation p.E245K 0.33 tolerated(0.36) possibly_damaging(0.458) TCGA-A1-A0SI-01 19 37310624 37310624 G A ZNF790 Missense_Mutation p.L208F 0.20 tolerated(0.71) benign(0.002) TCGA-A1-A0SI-01 19 37368402 37368402 C T ZNF345 Missense_Mutation p.H224Y 0.18 deleterious(0.01) probably_damaging(1) TCGA-A1-A0SI-01 19 38089317 38089317 G A ZNF540 5'UTR 0.20 TCGA-A1-A0SI-01 19 40742257 40742257 G C AKT2 Missense_Mutation p.I289M 0.16 deleterious(0) possibly_damaging(0.9) TCGA-A1-A0SI-01 19 44740536 44740536 G A ZNF227 Silent p.Q651Q 0.30 TCGA-A1-A0SI-01 19 51499359 51499359 G A KLK8 Missense_Mutation p.R292C 0.32 deleterious(0) probably_damaging(0.931) TCGA-A1-A0SI-01 19 52034562 52034562 G C SIGLEC6 Missense_Mutation p.F93L 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-A1-A0SI-01 19 52723457 52723457 G C PPP2R1A Missense_Mutation p.D440H 0.08 deleterious(0) benign(0.051) TCGA-A1-A0SI-01 19 53079190 53079190 G A ZNF701 Missense_Mutation p.E86K 0.15 deleterious(0.01) possibly_damaging(0.655) TCGA-A1-A0SI-01 19 58005018 58005018 C G ZNF419 Missense_Mutation p.H366D 0.33 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SI-01 19 58213789 58213789 G A ZNF154 Silent p.L176L 0.16 TCGA-A1-A0SI-01 1 109479811 109479811 C G CLCC1 Missense_Mutation p.R424T 0.26 tolerated(0.11) probably_damaging(0.99) TCGA-A1-A0SI-01 1 110171114 110171114 C A AMPD2 Silent p.I522I 0.17 TCGA-A1-A0SI-01 1 145440048 145440048 C T TXNIP Missense_Mutation p.S161F 0.17 deleterious(0.04) benign(0.202) TCGA-A1-A0SI-01 1 145440072 145440072 C A TXNIP Missense_Mutation p.S169Y 0.19 tolerated(0.06) possibly_damaging(0.635) TCGA-A1-A0SI-01 1 149857969 149857969 G A HIST2H2BE Silent p.I74I 0.22 TCGA-A1-A0SI-01 1 151107724 151107724 C T SEMA6C Missense_Mutation p.E499K 0.08 tolerated(0.21) possibly_damaging(0.486) TCGA-A1-A0SI-01 1 152081408 152081408 C T TCHH Missense_Mutation p.D1429N 0.12 unknown(0) TCGA-A1-A0SI-01 1 153533856 153533856 C G S100A2 3'UTR 0.14 TCGA-A1-A0SI-01 1 155224516 155224516 G C FAM189B Missense_Mutation p.F51L 0.21 tolerated(0.25) probably_damaging(0.989) TCGA-A1-A0SI-01 1 155686914 155686914 G A DAP3 Missense_Mutation p.D55N 0.11 tolerated(0.5) benign(0.063) TCGA-A1-A0SI-01 1 156708525 156708525 C A MRPL24 5'UTR 0.35 TCGA-A1-A0SI-01 1 158687142 158687142 G C OR6K3 Nonsense_Mutation p.S255* 0.37 TCGA-A1-A0SI-01 1 160011609 160011609 G A KCNJ10 Silent p.F238F 0.15 TCGA-A1-A0SI-01 1 167301713 167301713 G C POU2F1 Missense_Mutation p.R23T 0.42 deleterious_low_confidence(0) unknown(0) TCGA-A1-A0SI-01 1 171033379 171033379 C G MROH9 Missense_Mutation p.F828L 0.11 tolerated(0.23) benign(0.022) TCGA-A1-A0SI-01 1 17280808 17280808 G T CROCC Nonsense_Mutation p.E1093* 0.12 TCGA-A1-A0SI-01 1 176664966 176664966 C T PAPPA2 Missense_Mutation p.S906L 0.25 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SI-01 1 180003060 180003060 G C CEP350 Missense_Mutation p.Q1263H 0.23 benign(0.043) TCGA-A1-A0SI-01 1 182617366 182617366 C G RGS8 Missense_Mutation p.C107S 0.13 deleterious(0) probably_damaging(0.986) TCGA-A1-A0SI-01 1 186908148 186908148 C T PLA2G4A Missense_Mutation p.S235L 0.09 deleterious(0) probably_damaging(1) TCGA-A1-A0SI-01 1 198676020 198676020 T G PTPRC Silent p.V281V 0.29 TCGA-A1-A0SI-01 1 200974018 200974018 G C KIF21B Missense_Mutation p.S259W 0.17 deleterious(0.02) possibly_damaging(0.668) TCGA-A1-A0SI-01 1 201063115 201063115 G C CACNA1S Missense_Mutation p.S98W 0.18 deleterious(0) probably_damaging(0.973) TCGA-A1-A0SI-01 1 226924709 226924709 C G ITPKB Missense_Mutation p.E151Q 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A1-A0SI-01 1 227170601 227170601 C G ADCK3 Missense_Mutation p.L316V 0.23 deleterious(0.04) benign(0.323) TCGA-A1-A0SI-01 1 229462759 229462759 G A CCSAP Intron 0.15 TCGA-A1-A0SI-01 1 236557682 236557682 C T EDARADD 5'UTR 0.26 TCGA-A1-A0SI-01 1 23688993 23688993 G C ZNF436 Missense_Mutation p.I294M 0.27 deleterious(0.03) probably_damaging(0.981) TCGA-A1-A0SI-01 1 23689523 23689523 G A ZNF436 Missense_Mutation p.P118S 0.34 tolerated(1) benign(0.032) TCGA-A1-A0SI-01 1 28562645 28562645 G A ATPIF1 5'UTR 0.38 TCGA-A1-A0SI-01 1 31769474 31769474 C T SNRNP40 Missense_Mutation p.G42E 0.26 tolerated(0.18) benign(0.024) TCGA-A1-A0SI-01 1 33099308 33099308 G A ZBTB8OS Silent p.L101L 0.15 TCGA-A1-A0SI-01 1 34209071 34209071 G A CSMD2 Silent p.N621N 0.22 TCGA-A1-A0SI-01 1 47144290 47144290 C A EFCAB14 Missense_Mutation p.R444L 0.25 tolerated(0.45) benign(0.002) TCGA-A1-A0SI-01 1 47400819 47400819 G C CYP4A11 Missense_Mutation p.Q215E 0.18 tolerated(0.33) benign(0.026) TCGA-A1-A0SI-01 1 7886690 7886690 G A PER3 Missense_Mutation p.R695Q 0.19 deleterious(0.03) possibly_damaging(0.602) TCGA-A1-A0SI-01 1 87041055 87041055 C G CLCA4 Missense_Mutation p.P575R 0.33 tolerated(0.12) benign(0.296) TCGA-A1-A0SI-01 1 92846305 92846305 G C RPAP2 Missense_Mutation p.Q571H 0.12 tolerated(0.54) possibly_damaging(0.739) TCGA-A1-A0SI-01 1 92846360 92846360 G A RPAP2 Missense_Mutation p.E590K 0.12 deleterious(0.05) benign(0.065) TCGA-A1-A0SI-01 1 99167432 99167432 G A SNX7 Silent p.L366L 0.23 TCGA-A1-A0SI-01 20 39791131 39791131 C T PLCG1 Silent p.V184V 0.33 TCGA-A1-A0SI-01 20 40790028 40790028 C G PTPRT Missense_Mutation p.K882N 0.47 deleterious(0) probably_damaging(0.992) TCGA-A1-A0SI-01 20 45170399 45170399 C T OCSTAMP Silent p.A405A 0.64 TCGA-A1-A0SI-01 20 49552777 49552777 C G DPM1 Missense_Mutation p.E196Q 0.25 tolerated(0.65) benign(0.034) TCGA-A1-A0SI-01 20 56285550 56285550 C A PMEPA1 5'Flank 0.15 TCGA-A1-A0SI-01 21 10934080 10934080 G A TPTE Silent p.V299V 0.09 TCGA-A1-A0SI-01 21 16340055 16340055 G C NRIP1 Missense_Mutation p.I153M 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-A1-A0SI-01 21 46031993 46031993 C T TSPEAR Intron 0.18 TCGA-A1-A0SI-01 22 31679123 31679123 G A PIK3IP1 Missense_Mutation p.P247S 0.21 tolerated(0.76) benign(0.021) TCGA-A1-A0SI-01 22 38075655 38075655 G T LGALS1 Missense_Mutation p.D103Y 0.29 deleterious(0) probably_damaging(0.976) TCGA-A1-A0SI-01 22 50659412 50659412 G C TUBGCP6 Missense_Mutation p.P1126A 0.26 tolerated(0.28) unknown(0) TCGA-A1-A0SI-01 2 108455374 108455374 G C RGPD4 Missense_Mutation p.R120T 0.32 deleterious(0) benign(0.012) TCGA-A1-A0SI-01 2 116101489 116101489 G C DPP10 Splice_Site p.X95_splice 0.27 TCGA-A1-A0SI-01 2 130910973 130910973 C T SMPD4 Silent p.Q687Q 0.29 TCGA-A1-A0SI-01 2 165947193 165947193 G C SCN3A Missense_Mutation p.L1824V 0.17 deleterious(0) probably_damaging(0.995) TCGA-A1-A0SI-01 2 187626929 187626929 G C FAM171B Missense_Mutation p.W620C 0.12 deleterious(0) probably_damaging(1) TCGA-A1-A0SI-01 2 196737067 196737067 G T DNAH7 Silent p.L2180L 0.22 TCGA-A1-A0SI-01 2 203329576 203329576 C T BMPR2 Nonsense_Mutation p.Q41* 0.13 TCGA-A1-A0SI-01 2 220430106 220430106 C A OBSL1 Missense_Mutation p.K755N 0.19 tolerated(0.28) benign(0.315) TCGA-A1-A0SI-01 2 222301283 222301283 G A EPHA4 Missense_Mutation p.R728C 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-A1-A0SI-01 2 224462236 224462236 G C SCG2 Missense_Mutation p.L589V 0.16 deleterious(0.02) possibly_damaging(0.454) TCGA-A1-A0SI-01 2 239176751 239176751 C T PER2 Missense_Mutation p.E305K 0.14 deleterious(0.04) benign(0.121) TCGA-A1-A0SI-01 2 71043268 71043268 C A CLEC4F Missense_Mutation p.Q415H 0.18 deleterious(0.01) possibly_damaging(0.868) TCGA-A1-A0SI-01 2 71060130 71060130 G C CD207 Missense_Mutation p.F206L 0.33 tolerated(0.52) benign(0.03) TCGA-A1-A0SI-01 2 73899496 73899496 G A ALMS1P RNA 0.22 TCGA-A1-A0SI-01 2 75425872 75425872 C T TACR1 Missense_Mutation p.M63I 0.26 deleterious(0) probably_damaging(1) TCGA-A1-A0SI-01 2 85890568 85890568 G C SFTPB Silent p.L313L 0.26 TCGA-A1-A0SI-01 2 8933973 8933973 G T KIDINS220 Missense_Mutation p.Q415K 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-A1-A0SI-01 2 97757395 97757395 G A FAHD2B Nonsense_Mutation p.Q17* 0.27 TCGA-A1-A0SI-01 3 108076828 108076828 C G HHLA2 Missense_Mutation p.L275V 0.41 tolerated(0.16) benign(0.266) TCGA-A1-A0SI-01 3 109052730 109052730 G A DPPA4 Silent p.I55I 0.48 TCGA-A1-A0SI-01 3 113323818 113323818 C T SIDT1 Nonsense_Mutation p.Q467* 0.11 TCGA-A1-A0SI-01 3 119133900 119133900 G C ARHGAP31 Missense_Mutation p.E1042Q 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-A1-A0SI-01 3 124449396 124449396 C T UMPS Silent p.F26F 0.11 TCGA-A1-A0SI-01 3 124951819 124951819 G C ZNF148 Nonsense_Mutation p.S584* 0.24 TCGA-A1-A0SI-01 3 129810946 129810946 C G RP11-93K22.13 Intron 0.16 TCGA-A1-A0SI-01 3 130659525 130659525 G C ATP2C1 Missense_Mutation p.E172Q 0.09 tolerated(0.17) benign(0.009) TCGA-A1-A0SI-01 3 132036383 132036383 G T ACPP Missense_Mutation p.R28L 0.14 tolerated(0.13) benign(0.13) TCGA-A1-A0SI-01 3 141464080 141464080 C G RNF7 Silent p.L101L 0.18 TCGA-A1-A0SI-01 3 14197884 14197884 C T XPC Missense_Mutation p.E662K 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-A1-A0SI-01 3 14552701 14552701 C T GRIP2 RNA 0.23 TCGA-A1-A0SI-01 3 148896325 148896325 G A CP Silent p.L919L 0.54 TCGA-A1-A0SI-01 3 149238528 149238528 C T WWTR1 3'UTR 0.14 TCGA-A1-A0SI-01 3 151163473 151163473 C T IGSF10 Silent p.L1432L 0.12 TCGA-A1-A0SI-01 3 153973323 153973323 C T ARHGEF26 3'UTR 0.56 TCGA-A1-A0SI-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.41 tolerated(0.36) benign(0.4) TCGA-A1-A0SI-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.39 tolerated(0.11) possibly_damaging(0.529) TCGA-A1-A0SI-01 3 180379751 180379751 A G CCDC39 Silent p.H85H 0.47 TCGA-A1-A0SI-01 3 183777385 183777385 C G HTR3C Silent p.L294L 0.13 TCGA-A1-A0SI-01 3 191179038 191179038 G A PYDC2 Silent p.L29L 0.53 TCGA-A1-A0SI-01 3 44762415 44762415 G A ZNF502 Missense_Mutation p.D36N 0.17 tolerated(0.31) benign(0) TCGA-A1-A0SI-01 3 46449655 46449655 G A CCRL2 Missense_Mutation p.D41N 0.23 tolerated(0.33) benign(0.01) TCGA-A1-A0SI-01 3 47859511 47859511 G T DHX30 Splice_Site p.X10_splice 0.14 TCGA-A1-A0SI-01 3 50036917 50036917 G C RBM6 Missense_Mutation p.D510H 0.19 deleterious(0) probably_damaging(0.948) TCGA-A1-A0SI-01 3 50151418 50151418 G C RBM5 Missense_Mutation p.L551F 0.17 deleterious(0) possibly_damaging(0.543) TCGA-A1-A0SI-01 3 50151486 50151486 G C RBM5 Missense_Mutation p.R574T 0.17 deleterious(0.01) benign(0.035) TCGA-A1-A0SI-01 3 51746802 51746802 G A GRM2 Missense_Mutation p.R255Q 0.26 tolerated(0.18) benign(0.206) TCGA-A1-A0SI-01 3 52383095 52383095 C G DNAH1 Silent p.L766L 0.20 TCGA-A1-A0SI-01 3 52550384 52550384 C G STAB1 Missense_Mutation p.A1386G 0.24 tolerated(0.38) benign(0.013) TCGA-A1-A0SI-01 3 64640119 64640119 C T ADAMTS9 Missense_Mutation p.G409E 0.08 deleterious(0.01) probably_damaging(1) TCGA-A1-A0SI-01 4 144801602 144801602 G C GYPE Missense_Mutation p.S33C 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-A1-A0SI-01 4 25834704 25834704 G A SEL1L3 Silent p.V337V 0.17 TCGA-A1-A0SI-01 5 121786699 121786699 G A SNCAIP Silent p.L719L 0.16 TCGA-A1-A0SI-01 5 167675132 167675132 G A TENM2 Silent p.E2396E 0.25 TCGA-A1-A0SI-01 5 179743800 179743800 C T GFPT2 Silent p.V372V 0.29 TCGA-A1-A0SI-01 5 180651357 180651357 A G TRIM41 Missense_Mutation p.M120V 0.18 tolerated(0.58) unknown(0) TCGA-A1-A0SI-01 5 34821885 34821885 T A RAI14 Missense_Mutation p.L351H 0.15 deleterious(0) probably_damaging(0.947) TCGA-A1-A0SI-01 5 34821889 34821889 C T RAI14 Silent p.L352L 0.16 TCGA-A1-A0SI-01 5 34821891 34821891 C T RAI14 Missense_Mutation p.S353F 0.16 tolerated(0.52) benign(0.002) TCGA-A1-A0SI-01 5 34824468 34824468 C G RAI14 Missense_Mutation p.L844V 0.31 deleterious(0.01) benign(0.046) TCGA-A1-A0SI-01 5 57790418 57790418 C G GAPT Missense_Mutation p.L19V 0.18 deleterious(0.02) benign(0.121) TCGA-A1-A0SI-01 5 71756672 71756672 C T ZNF366 Missense_Mutation p.E218K 0.26 tolerated(0.12) benign(0.195) TCGA-A1-A0SI-01 6 135511005 135511007 AAG - MYB In_Frame_Del p.E99del 0.21 TCGA-A1-A0SI-01 6 152451876 152451876 G A SYNE1 Missense_Mutation p.S8711F 0.23 possibly_damaging(0.613) TCGA-A1-A0SI-01 6 33169176 33169176 G A SLC39A7 Missense_Mutation p.E52K 0.27 tolerated_low_confidence(0.19) unknown(0) TCGA-A1-A0SI-01 6 84884604 84884604 C G KIAA1009 Missense_Mutation p.E623Q 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-A1-A0SI-01 7 100146506 100146506 G A AGFG2 Missense_Mutation p.E95K 0.43 deleterious(0) probably_damaging(0.989) TCGA-A1-A0SI-01 7 102732968 102732968 G A ARMC10 Silent p.L191L 0.39 TCGA-A1-A0SI-01 7 105205803 105205803 C T RINT1 Nonsense_Mutation p.R656* 0.28 TCGA-A1-A0SI-01 7 135661995 135661995 G A MTPN 5'UTR 0.20 TCGA-A1-A0SI-01 7 142180532 142180532 G A TRBV6-5 Silent p.F109F 0.19 TCGA-A1-A0SI-01 7 151711785 151711785 C T GALNTL5 Silent p.I361I 0.10 TCGA-A1-A0SI-01 7 151960110 151960110 C G KMT2C Missense_Mutation p.W430C 0.09 probably_damaging(0.954) TCGA-A1-A0SI-01 7 152497655 152497655 C G ACTR3B Missense_Mutation p.A47G 0.23 tolerated(0.53) benign(0.031) TCGA-A1-A0SI-01 7 156450902 156450902 G A RNF32 Silent p.V177V 0.27 TCGA-A1-A0SI-01 7 27284774 27284774 G A EVX1 Missense_Mutation p.A179T 0.56 tolerated(0.16) benign(0.436) TCGA-A1-A0SI-01 7 43477649 43477649 G T HECW1 Silent p.V283V 0.08 TCGA-A1-A0SI-01 7 43916676 43916676 G C URGCP Missense_Mutation p.P796A 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-A1-A0SI-01 7 43916993 43916993 G C URGCP Nonsense_Mutation p.S690* 0.27 TCGA-A1-A0SI-01 7 63986752 63986752 G A ZNF680 Intron 0.19 TCGA-A1-A0SI-01 7 72877401 72877401 G C BAZ1B Missense_Mutation p.L1034V 0.16 tolerated(0.19) benign(0.098) TCGA-A1-A0SI-01 7 77240143 77240143 C G PTPN12 Missense_Mutation p.S275C 0.17 deleterious(0.02) benign(0.129) TCGA-A1-A0SI-01 7 91735065 91735065 G T AKAP9 Nonsense_Mutation p.G3802* 0.07 TCGA-A1-A0SI-01 7 99366074 99366074 C T CYP3A4 Silent p.V191V 0.21 TCGA-A1-A0SI-01 7 99701244 99701244 G C AP4M1 Missense_Mutation p.E158Q 0.08 tolerated(0.09) possibly_damaging(0.906) TCGA-A1-A0SI-01 8 139895445 139895445 C G COL22A1 5'UTR 0.30 TCGA-A1-A0SI-01 8 144940167 144940167 G C EPPK1 Missense_Mutation p.L2419V 0.22 benign(0.057) TCGA-A1-A0SI-01 8 145133638 145133638 G A EXOSC4 Missense_Mutation p.G3R 0.30 tolerated(0.13) benign(0.063) TCGA-A1-A0SI-01 8 145662356 145662356 C G TONSL Intron 0.24 TCGA-A1-A0SI-01 8 30694361 30694361 G A TEX15 Missense_Mutation p.L2764F 0.33 deleterious(0.02) benign(0.079) TCGA-A1-A0SI-01 8 93088269 93088269 G A RUNX1T1 Intron 0.19 TCGA-A1-A0SI-01 8 95738635 95738635 C G DPY19L4 Missense_Mutation p.I31M 0.09 tolerated(0.11) benign(0.131) TCGA-A1-A0SI-01 8 96259698 96259698 C T C8orf37 3'UTR 0.38 TCGA-A1-A0SI-01 9 117187341 117187341 G C DFNB31 Intron 0.17 TCGA-A1-A0SI-01 9 135917590 135917590 G A GTF3C5 Silent p.K90K 0.21 TCGA-A1-A0SI-01 9 32632175 32632175 G C TAF1L Missense_Mutation p.Q1135E 0.34 tolerated(0.14) benign(0.015) TCGA-A1-A0SI-01 9 33113367 33113367 G C B4GALT1 3'UTR 0.37 TCGA-A1-A0SI-01 9 34552694 34552694 G C CNTFR Silent p.L309L 0.13 TCGA-A1-A0SI-01 9 35811635 35811635 G A SPAG8 Silent p.G136G 0.32 TCGA-A1-A0SI-01 9 39078433 39078433 C G CNTNAP3 Missense_Mutation p.E1232Q 0.16 tolerated(0.1) benign(0.091) TCGA-A1-A0SI-01 9 4713072 4713072 G A AK3 Silent p.F196F 0.10 TCGA-A1-A0SI-01 9 5897575 5897575 C T MLANA Silent p.I32I 0.30 TCGA-A1-A0SI-01 9 94087618 94087618 C T AUH Missense_Mutation p.A163T 0.21 tolerated(0.27) benign(0.008) TCGA-A1-A0SI-01 9 95375398 95375398 G C CENPP Silent p.L278L 0.10 TCGA-A1-A0SI-01 9 99694157 99694157 C G NUTM2G Missense_Mutation p.S57C 0.19 deleterious(0.02) probably_damaging(0.968) TCGA-A1-A0SI-01 X 103216804 103216804 C A TMSB15B 5'Flank 0.15 TCGA-A1-A0SI-01 X 106332067 106332067 C A RBM41 Nonsense_Mutation p.E176* 0.27 TCGA-A1-A0SI-01 X 108684643 108684643 G C GUCY2F Silent p.L546L 0.14 TCGA-A1-A0SI-01 X 117739252 117739252 C T DOCK11 Missense_Mutation p.L872F 0.08 tolerated(0.14) probably_damaging(0.973) TCGA-A1-A0SI-01 X 122528948 122528948 G A GRIA3 Missense_Mutation p.E294K 0.33 tolerated(0.18) probably_damaging(0.997) TCGA-A1-A0SI-01 X 144906490 144906490 C T SLITRK2 3'UTR 0.16 TCGA-A1-A0SI-01 X 153698349 153698349 G C PLXNA3 Missense_Mutation p.D1609H 0.33 deleterious(0.01) benign(0.146) TCGA-A1-A0SI-01 X 23397742 23397742 G A PTCHD1 Missense_Mutation p.R129K 0.15 tolerated(0.32) benign(0.054) TCGA-A1-A0SI-01 X 23397743 23397743 G T PTCHD1 Missense_Mutation p.R129S 0.15 tolerated(0.42) benign(0.006) TCGA-A1-A0SI-01 X 2856221 2856221 C T ARSE Missense_Mutation p.G402S 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-A1-A0SI-01 X 32717249 32717249 G C DMD Missense_Mutation p.Q271E 0.10 benign(0.34) TCGA-A1-A0SI-01 X 44921975 44921975 C G KDM6A Silent p.V503V 0.12 TCGA-A1-A0SI-01 X 46322225 46322225 G C KRBOX4 Missense_Mutation p.E20Q 0.31 deleterious(0) probably_damaging(0.992) TCGA-A1-A0SI-01 X 52847254 52847254 G C XAGE5 3'UTR 0.14 TCGA-A1-A0SI-01 X 54160448 54160448 C G FAM120C Missense_Mutation p.E550Q 0.12 tolerated(0.57) benign(0.05) TCGA-A1-A0SI-01 X 54263720 54263720 C T WNK3 Missense_Mutation p.E1427K 0.27 tolerated(0.13) benign(0.033) TCGA-A1-A0SI-01 X 69772023 69772023 C A TEX11 Nonsense_Mutation p.E840* 0.28 TCGA-A1-A0SI-01 X 70674621 70674621 G A TAF1 Missense_Mutation p.D1638N 0.08 tolerated(1) probably_damaging(0.999) TCGA-A1-A0SI-01 X 71354187 71354187 G A NHSL2 Intron 0.11 TCGA-A1-A0SI-01 X 7252144 7252144 G A STS Silent p.Q458Q 0.17 TCGA-A1-A0SJ-01 11 7650734 7650734 G T PPFIBP2 Silent p.R311R 0.28 TCGA-A1-A0SJ-01 11 8959533 8959533 G C ASCL3 Missense_Mutation p.P59R 0.20 tolerated(0.1) benign(0.397) TCGA-A1-A0SJ-01 12 102161847 102161847 G A GNPTAB Missense_Mutation p.S459L 0.31 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SJ-01 12 57957405 57957405 G A KIF5A Missense_Mutation p.V74I 0.03 deleterious(0.03) probably_damaging(0.993) TCGA-A1-A0SJ-01 13 114438391 114438391 C T GRK1 3'UTR 0.67 TCGA-A1-A0SJ-01 13 20763283 20763283 G C GJB2 Missense_Mutation p.F146L 0.21 tolerated(0.16) probably_damaging(0.999) TCGA-A1-A0SJ-01 14 24845882 24845882 G A NFATC4 Silent p.P876P 0.16 TCGA-A1-A0SJ-01 15 65385553 65385553 C T UBAP1L Missense_Mutation p.R343H 0.28 tolerated(0.52) possibly_damaging(0.511) TCGA-A1-A0SJ-01 15 65489601 65489601 A T CILP Missense_Mutation p.F1008Y 0.24 deleterious(0.05) probably_damaging(0.977) TCGA-A1-A0SJ-01 16 11361846 11361846 G A TNP2 3'UTR 0.11 TCGA-A1-A0SJ-01 16 57059665 57059665 C T NLRC5 Silent p.F270F 0.33 TCGA-A1-A0SJ-01 16 814721 814721 C A MSLN Missense_Mutation p.F125L 0.13 deleterious(0) probably_damaging(0.982) TCGA-A1-A0SJ-01 17 30771560 30771560 G C PSMD11 Missense_Mutation p.V7L 0.39 tolerated(0.32) benign(0) TCGA-A1-A0SJ-01 17 62022840 62022840 G C SCN4A Missense_Mutation p.I1200M 0.28 tolerated(0.13) benign(0.026) TCGA-A1-A0SJ-01 17 66246548 66246548 T G AMZ2 Missense_Mutation p.F74V 0.49 deleterious(0.01) possibly_damaging(0.493) TCGA-A1-A0SJ-01 17 72846850 72846850 G A GRIN2C Silent p.Y390Y 0.27 TCGA-A1-A0SJ-01 17 79914949 79914949 C T NOTUM Missense_Mutation p.A233T 0.69 deleterious(0) probably_damaging(1) TCGA-A1-A0SJ-01 19 50412785 50412785 C A NUP62 Missense_Mutation p.A94S 0.38 tolerated(0.12) benign(0.005) TCGA-A1-A0SJ-01 19 57839971 57839971 G A ZNF543 Missense_Mutation p.D381N 0.13 tolerated(0.31) benign(0.252) TCGA-A1-A0SJ-01 1 112029214 112029214 C T ADORA3 Missense_Mutation p.R289H 0.55 tolerated_low_confidence(1) benign(0.001) TCGA-A1-A0SJ-01 1 16258909 16258915 CCCTGTT - SPEN Frame_Shift_Del p.P2059Kfs*3 0.27 TCGA-A1-A0SJ-01 1 241798828 241798828 G - CHML Frame_Shift_Del p.H81Mfs*87 0.26 TCGA-A1-A0SJ-01 1 86249225 86249225 G A COL24A1 Missense_Mutation p.A1413V 0.08 tolerated(0.89) benign(0.001) TCGA-A1-A0SJ-01 20 48604526 48604526 G A SNAI1 Missense_Mutation p.R243Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-A1-A0SJ-01 20 57565983 57565983 G C NELFCD Missense_Mutation p.Q287H 0.11 tolerated(0.33) benign(0.003) TCGA-A1-A0SJ-01 20 57566094 57566094 G C NELFCD Missense_Mutation p.K324N 0.15 tolerated(0.08) benign(0.14) TCGA-A1-A0SJ-01 20 60890259 60890259 C T LAMA5 Silent p.E2624E 0.07 TCGA-A1-A0SJ-01 20 61939981 61939981 C T COL20A1 Missense_Mutation p.T288M 0.16 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SJ-01 20 62038316 62038316 C T KCNQ2 Missense_Mutation p.R767Q 0.16 tolerated_low_confidence(0.17) possibly_damaging(0.631) TCGA-A1-A0SJ-01 21 44839242 44839242 C T SIK1 Silent p.S412S 0.11 TCGA-A1-A0SJ-01 3 101378855 101378855 A C ZBTB11 Missense_Mutation p.F606L 0.42 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SJ-01 4 83350497 83350497 C G HNRNPDL Missense_Mutation p.S116T 0.36 tolerated_low_confidence(0.41) benign(0) TCGA-A1-A0SJ-01 5 140807543 140807543 G T PCDHGB6 Intron 0.13 TCGA-A1-A0SJ-01 5 167645417 167645417 C T TENM2 Silent p.N1507N 0.36 TCGA-A1-A0SJ-01 5 175875463 175875463 C A FAF2 Missense_Mutation p.Q19K 0.33 deleterious(0.02) benign(0.045) TCGA-A1-A0SJ-01 6 88854518 88854518 A G CNR1 Missense_Mutation p.L159P 0.23 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SJ-01 7 142124196 142124196 G A TRBV6-8 Silent p.L94L 0.20 TCGA-A1-A0SJ-01 7 50468114 50468114 G A IKZF1 Missense_Mutation p.R408H 0.22 deleterious(0) probably_damaging(0.932) TCGA-A1-A0SJ-01 7 91792659 91792659 C A LRRD1 Nonsense_Mutation p.E620* 0.17 TCGA-A1-A0SJ-01 9 6012961 6012961 T C RANBP6 Missense_Mutation p.S883G 0.58 tolerated(0.15) benign(0.003) TCGA-A1-A0SJ-01 X 119738713 119738713 G A MCTS1 Missense_Mutation p.G2D 0.17 deleterious_low_confidence(0) benign(0.008) TCGA-A1-A0SJ-01 X 13776561 13776561 C T OFD1 Nonsense_Mutation p.Q550* 0.25 TCGA-A1-A0SK-01 10 124390771 124390771 G A DMBT1 Missense_Mutation p.R1978H 0.56 tolerated(1) benign(0.036) TCGA-A1-A0SK-01 10 27520705 27520705 A C ACBD5 Missense_Mutation p.M116R 0.62 deleterious(0) probably_damaging(0.991) TCGA-A1-A0SK-01 10 69881873 69881873 C T MYPN Silent p.H226H 0.55 TCGA-A1-A0SK-01 10 69935159 69935159 G A MYPN Missense_Mutation p.A882T 0.08 tolerated(0.1) benign(0.005) TCGA-A1-A0SK-01 11 100845328 100845328 C T ARHGAP42 Missense_Mutation p.P617S 0.24 tolerated(0.65) benign(0.002) TCGA-A1-A0SK-01 11 103024187 103024187 A T DYNC2H1 Missense_Mutation p.K1084N 0.09 possibly_damaging(0.761) TCGA-A1-A0SK-01 11 121008612 121008612 G C TECTA Missense_Mutation p.V1142L 0.48 tolerated(0.14) benign(0.004) TCGA-A1-A0SK-01 11 57156732 57156732 C G PRG2 Missense_Mutation p.E39D 0.06 tolerated(0.59) benign(0.157) TCGA-A1-A0SK-01 11 62297801 62297801 T C AHNAK Missense_Mutation p.K1363R 0.52 probably_damaging(0.971) TCGA-A1-A0SK-01 11 64673972 64673972 A C ATG2A Missense_Mutation p.L1006R 0.12 deleterious(0) probably_damaging(0.961) TCGA-A1-A0SK-01 11 75160132 75160132 C T GDPD5 Missense_Mutation p.V202M 0.25 deleterious(0) benign(0.014) TCGA-A1-A0SK-01 11 82938872 82938872 A T ANKRD42 Missense_Mutation p.I263F 0.24 tolerated(0.06) benign(0.019) TCGA-A1-A0SK-01 11 92533189 92533189 T A FAT3 Missense_Mutation p.F2337Y 0.55 probably_damaging(0.999) TCGA-A1-A0SK-01 12 113515277 113515277 C A DTX1 Missense_Mutation p.P103Q 0.21 deleterious(0) benign(0.195) TCGA-A1-A0SK-01 12 49717675 49717675 T C TROAP Silent p.D64D 0.43 TCGA-A1-A0SK-01 12 50497819 50497820 - AGAG GPD1 5'UTR 0.34 TCGA-A1-A0SK-01 12 54678053 54678053 G A HNRNPA1 Missense_Mutation p.G359S 0.38 tolerated(0.22) unknown(0) TCGA-A1-A0SK-01 12 56506727 56506727 C A PA2G4 3'UTR 0.38 TCGA-A1-A0SK-01 12 56619427 56619427 G - NABP2 Frame_Shift_Del p.G80Vfs*3 0.11 TCGA-A1-A0SK-01 12 6664672 6664672 G C IFFO1 Missense_Mutation p.S175W 0.07 deleterious(0.01) probably_damaging(0.917) TCGA-A1-A0SK-01 12 6711298 6711298 C A CHD4 Missense_Mutation p.G89V 0.08 tolerated_low_confidence(0.05) probably_damaging(0.953) TCGA-A1-A0SK-01 13 50204651 50204651 C T ARL11 Missense_Mutation p.A23V 1.00 deleterious(0.01) possibly_damaging(0.604) TCGA-A1-A0SK-01 14 21623196 21623196 G C OR5AU1 Missense_Mutation p.T330R 0.21 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SK-01 14 24846866 24846866 C A NFATC4 3'UTR 0.08 TCGA-A1-A0SK-01 15 78921983 78921983 C T CHRNB4 Missense_Mutation p.V222M 0.42 deleterious(0) probably_damaging(0.94) TCGA-A1-A0SK-01 16 27480677 27480686 ACCACAATGC - GTF3C1 Frame_Shift_Del p.S1667Tfs*6 0.56 TCGA-A1-A0SK-01 16 89644130 89644130 G A CPNE7 Splice_Site p.X119_splice 0.45 TCGA-A1-A0SK-01 17 34340326 34340326 G A CCL23 Missense_Mutation p.R109C 0.96 deleterious(0.02) probably_damaging(0.944) TCGA-A1-A0SK-01 17 3518763 3518763 G C SHPK Missense_Mutation p.P298A 0.92 tolerated(0.07) benign(0.03) TCGA-A1-A0SK-01 17 41245985 41245985 T C BRCA1 Silent p.A521A 0.99 TCGA-A1-A0SK-01 17 4883751 4883751 G A CAMTA2 Missense_Mutation p.S312F 0.94 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A1-A0SK-01 17 7578532 7578532 A T TP53 Missense_Mutation p.M133K 0.98 deleterious(0) benign(0.122) TCGA-A1-A0SK-01 18 21534511 21534511 G A LAMA3 Missense_Mutation p.G3301S 0.51 probably_damaging(1) TCGA-A1-A0SK-01 18 47108126 47108126 G A LIPG Intron 0.47 TCGA-A1-A0SK-01 19 19030117 19030117 C G COPE Missense_Mutation p.G14A 0.17 tolerated(0.09) unknown(0) TCGA-A1-A0SK-01 19 2339888 2339888 C T SPPL2B RNA 0.95 TCGA-A1-A0SK-01 19 33892709 33892709 G A PEPD Silent p.N295N 0.42 TCGA-A1-A0SK-01 19 35749935 35749935 A G LSR Missense_Mutation p.N229S 0.16 deleterious(0.01) possibly_damaging(0.501) TCGA-A1-A0SK-01 19 40947651 40947651 G C SERTAD3 Missense_Mutation p.Q113E 0.23 tolerated(0.59) benign(0.015) TCGA-A1-A0SK-01 19 41286287 41286287 C A RAB4B Intron 0.51 TCGA-A1-A0SK-01 19 44660912 44660912 C G ZNF234 Missense_Mutation p.T248S 0.13 tolerated(0.67) benign(0.007) TCGA-A1-A0SK-01 1 151109550 151109550 C A SEMA6C Missense_Mutation p.V253L 0.33 deleterious(0) benign(0.088) TCGA-A1-A0SK-01 1 155912487 155912487 G T RXFP4 Missense_Mutation p.L329F 0.33 tolerated(0.46) benign(0.001) TCGA-A1-A0SK-01 1 155922424 155922424 C T ARHGEF2 Missense_Mutation p.R660H 0.08 deleterious(0.03) probably_damaging(0.964) TCGA-A1-A0SK-01 1 176012391 176012391 T G RFWD2 Silent p.R515R 0.53 TCGA-A1-A0SK-01 1 215848217 215848217 G T USH2A Missense_Mutation p.P4346T 0.66 benign(0.005) TCGA-A1-A0SK-01 1 226426717 226426717 C T LIN9 Silent p.K416K 0.39 TCGA-A1-A0SK-01 1 26784300 26784300 G C DHDDS Silent p.L187L 0.15 TCGA-A1-A0SK-01 1 29016663 29016663 A T GMEB1 Missense_Mutation p.E69V 0.56 deleterious(0.01) possibly_damaging(0.601) TCGA-A1-A0SK-01 20 42232424 42232424 G C IFT52 Missense_Mutation p.D78H 0.09 deleterious(0.05) possibly_damaging(0.776) TCGA-A1-A0SK-01 20 60893617 60893617 C G LAMA5 Missense_Mutation p.E2378Q 0.10 benign(0.206) TCGA-A1-A0SK-01 22 18022211 18022211 C T CECR2 Silent p.H772H 0.65 TCGA-A1-A0SK-01 22 34157362 34157362 G T LARGE Missense_Mutation p.F34L 0.46 tolerated_low_confidence(1) benign(0) TCGA-A1-A0SK-01 2 101541639 101541639 C T NPAS2 Missense_Mutation p.R22W 0.49 deleterious(0) probably_damaging(1) TCGA-A1-A0SK-01 2 102014145 102014145 T A RFX8 Silent p.A429A 0.44 TCGA-A1-A0SK-01 2 111419365 111419365 C T BUB1 Silent p.A337A 0.46 TCGA-A1-A0SK-01 2 167159748 167159748 C T SCN9A Silent p.L251L 0.33 TCGA-A1-A0SK-01 2 239264716 239264716 G A TRAF3IP1 Missense_Mutation p.E562K 0.94 deleterious(0.05) possibly_damaging(0.9) TCGA-A1-A0SK-01 2 37010495 37010497 AAG - VIT In_Frame_Del p.E289del 0.57 TCGA-A1-A0SK-01 2 73898264 73898264 G C ALMS1P RNA 0.44 TCGA-A1-A0SK-01 4 156863572 156863572 C A CTSO Missense_Mutation p.R94I 0.08 deleterious(0.01) benign(0.011) TCGA-A1-A0SK-01 4 162307029 162307029 A G FSTL5 Missense_Mutation p.L805S 0.08 deleterious(0.04) probably_damaging(0.986) TCGA-A1-A0SK-01 4 44626655 44626655 C T YIPF7 Missense_Mutation p.V215I 0.12 tolerated(0.14) probably_damaging(0.991) TCGA-A1-A0SK-01 4 69533861 69533861 C T UGT2B15 Nonsense_Mutation p.W257* 0.38 TCGA-A1-A0SK-01 4 83719603 83719603 C A SCD5 Missense_Mutation p.G30C 0.28 tolerated(0.06) benign(0.257) TCGA-A1-A0SK-01 5 177580853 177580853 G C NHP2 5'UTR 1.00 TCGA-A1-A0SK-01 6 105526463 105526463 A T LIN28B Silent p.P186P 0.60 TCGA-A1-A0SK-01 6 55940289 55940289 G T COL21A1 Silent p.A633A 0.30 TCGA-A1-A0SK-01 7 100488043 100488043 G C ACHE 3'UTR 0.41 TCGA-A1-A0SK-01 7 149128876 149128876 C T ZNF777 Silent p.T829T 0.73 TCGA-A1-A0SK-01 7 150878405 150878405 T C ASB10 Missense_Mutation p.D242G 0.29 deleterious(0) benign(0.021) TCGA-A1-A0SK-01 7 28534521 28534521 C G CREB5 Intron 0.34 TCGA-A1-A0SK-01 7 30793498 30793498 G A INMT Silent p.P102P 0.74 TCGA-A1-A0SK-01 8 133912567 133912567 C T TG Missense_Mutation p.S1139L 0.87 tolerated(0.14) benign(0.007) TCGA-A1-A0SK-01 8 142459700 142459700 C T SNORD5 3'Flank 0.91 TCGA-A1-A0SK-01 8 142505012 142505012 A C MROH5 Missense_Mutation p.L110R 0.08 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SK-01 8 145007427 145007427 G A PLEC Silent p.L589L 0.15 TCGA-A1-A0SK-01 8 35584005 35584005 G T UNC5D Missense_Mutation p.V547F 0.35 deleterious(0.03) possibly_damaging(0.529) TCGA-A1-A0SK-01 X 100245742 100245742 T A ARL13A 3'UTR 0.35 TCGA-A1-A0SK-01 X 101911297 101911297 A G GPRASP1 Missense_Mutation p.E819G 0.07 deleterious(0.01) possibly_damaging(0.722) TCGA-A1-A0SK-01 X 119210984 119210984 G T RHOXF2B Missense_Mutation p.Q117K 0.09 tolerated(0.11) benign(0.132) TCGA-A1-A0SK-01 X 142716453 142716453 G C SLITRK4 Nonsense_Mutation p.Y824* 0.45 TCGA-A1-A0SK-01 X 142718044 142718044 G A SLITRK4 Missense_Mutation p.T294I 0.45 tolerated(0.24) possibly_damaging(0.598) TCGA-A1-A0SK-01 X 148586645 148586645 C T IDS Missense_Mutation p.R8Q 0.45 tolerated_low_confidence(0.43) benign(0.009) TCGA-A1-A0SK-01 X 153060173 153060173 G T SSR4 Missense_Mutation p.A11S 0.13 tolerated(0.2) unknown(0) TCGA-A1-A0SK-01 X 68383057 68383057 C A PJA1 Missense_Mutation p.V9L 0.20 deleterious(0.05) benign(0.002) TCGA-A1-A0SK-01 X 69749698 69749698 C T TEX11 Missense_Mutation p.S906N 0.18 tolerated(0.34) benign(0.002) TCGA-A1-A0SK-01 X 9914857 9914857 C T SHROOM2 Silent p.H1577H 0.56 TCGA-A1-A0SM-01 10 119134106 119134106 G T PDZD8 Silent p.V211V 0.31 TCGA-A1-A0SM-01 10 46135376 46135376 T A ZFAND4 Missense_Mutation p.D202V 0.28 deleterious(0) probably_damaging(0.991) TCGA-A1-A0SM-01 10 95720549 95720549 T C PIPSL RNA 0.27 TCGA-A1-A0SM-01 10 99130258 99130258 G A RRP12 Silent p.L881L 0.21 TCGA-A1-A0SM-01 11 118375650 118375650 G A KMT2A Missense_Mutation p.V3015I 0.08 probably_damaging(0.986) TCGA-A1-A0SM-01 11 78780799 78780799 A T TENM4 Missense_Mutation p.V64E 0.09 tolerated_low_confidence(0.1) benign(0.291) TCGA-A1-A0SM-01 12 10134654 10134654 T C CLEC12A Silent p.Y199Y 0.22 TCGA-A1-A0SM-01 12 133393258 133393258 C A GOLGA3 Missense_Mutation p.D92Y 0.29 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-A1-A0SM-01 12 43833750 43833750 C A ADAMTS20 Missense_Mutation p.V805F 0.02 deleterious(0) possibly_damaging(0.817) TCGA-A1-A0SM-01 12 52099215 52099215 C T SCN8A Silent p.A383A 0.30 TCGA-A1-A0SM-01 12 56428824 56428824 G C IKZF4 Silent p.R489R 0.18 TCGA-A1-A0SM-01 12 56532266 56532266 C T ESYT1 Missense_Mutation p.R816W 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-A1-A0SM-01 14 73989691 73989691 G A HEATR4 Missense_Mutation p.R56C 0.19 tolerated(0.29) benign(0) TCGA-A1-A0SM-01 17 1840792 1840792 G A RTN4RL1 Silent p.G108G 0.16 TCGA-A1-A0SM-01 17 38182543 38182543 C G MED24 Silent p.A617A 0.04 TCGA-A1-A0SM-01 18 14808730 14808730 A G ANKRD30B Intron 0.07 TCGA-A1-A0SM-01 19 44936532 44936532 T G ZNF229 Missense_Mutation p.S35R 0.28 deleterious(0) benign(0.123) TCGA-A1-A0SM-01 1 147120061 147120061 T C ACP6 Missense_Mutation p.Y377C 0.56 tolerated(0.17) benign(0.05) TCGA-A1-A0SM-01 1 155020578 155020578 A T DCST1 Nonsense_Mutation p.K601* 0.11 TCGA-A1-A0SM-01 1 160144388 160144388 C T ATP1A4 Missense_Mutation p.T721I 0.52 deleterious(0) probably_damaging(1) TCGA-A1-A0SM-01 1 168165865 168165865 G A TIPRL Silent p.T199T 0.04 TCGA-A1-A0SM-01 20 34288883 34288883 T C ROMO1 3'UTR 0.28 TCGA-A1-A0SM-01 2 101648789 101648789 C T TBC1D8 Nonsense_Mutation p.W611* 0.13 TCGA-A1-A0SM-01 2 8822549 8822549 T C ID2 Missense_Mutation p.I85T 0.41 tolerated(0.12) benign(0.054) TCGA-A1-A0SM-01 3 148896320 148896320 A G CP Silent p.F920F 0.28 TCGA-A1-A0SM-01 3 188584034 188584034 G A LPP Missense_Mutation p.R486Q 0.26 deleterious(0) probably_damaging(0.941) TCGA-A1-A0SM-01 6 44250253 44250253 C T TCTE1 Missense_Mutation p.R297H 0.22 deleterious(0) probably_damaging(0.991) TCGA-A1-A0SM-01 7 100349612 100349612 C T ZAN Silent p.I628I 0.31 TCGA-A1-A0SM-01 8 143436021 143436021 G A TSNARE1 Missense_Mutation p.S22L 0.30 deleterious_low_confidence(0.03) unknown(0) TCGA-A1-A0SM-01 8 3076793 3076793 G A CSMD1 Silent p.F1552F 0.29 TCGA-A1-A0SM-01 8 42179428 42179428 G T IKBKB Missense_Mutation p.R568M 0.32 tolerated(0.17) benign(0.062) TCGA-A1-A0SM-01 X 103216715 103216715 A G TMSB15B 5'Flank 0.66 TCGA-A1-A0SM-01 X 128614761 128614761 G - SMARCA1 Frame_Shift_Del p.Q787Rfs*25 0.37 TCGA-A1-A0SN-01 10 96066253 96066253 G C PLCE1 Missense_Mutation p.G1898R 0.14 deleterious(0) probably_damaging(1) TCGA-A1-A0SN-01 10 98064133 98064133 C T DNTT 5'Flank 0.36 TCGA-A1-A0SN-01 11 1264225 1264225 C T MUC5B Missense_Mutation p.P2039S 0.42 unknown(0) TCGA-A1-A0SN-01 11 129993589 129993589 C T APLP2 Silent p.C335C 0.23 TCGA-A1-A0SN-01 11 56020439 56020439 T C OR5T3 Missense_Mutation p.I255T 0.13 deleterious(0) probably_damaging(0.969) TCGA-A1-A0SN-01 12 123058840 123058840 T C KNTC1 Silent p.N765N 0.15 TCGA-A1-A0SN-01 12 4479722 4479722 G A FGF23 Silent p.A181A 0.18 TCGA-A1-A0SN-01 12 49334867 49334867 G C ARF3 Missense_Mutation p.I4M 0.08 tolerated_low_confidence(0.18) benign(0.002) TCGA-A1-A0SN-01 12 9885586 9885586 C T CLECL1 Missense_Mutation p.R92Q 0.16 deleterious(0.02) benign(0.137) TCGA-A1-A0SN-01 14 20482894 20482894 T C OR4K14 Silent p.G153G 0.42 TCGA-A1-A0SN-01 14 73978799 73978808 AGGTCTCCCA - HEATR4 Frame_Shift_Del p.L487Cfs*45 0.29 TCGA-A1-A0SN-01 14 77735657 77735657 C G NGB Silent p.L34L 0.30 TCGA-A1-A0SN-01 15 42028642 42028642 C T MGA Missense_Mutation p.R1394C 0.43 deleterious(0) probably_damaging(0.932) TCGA-A1-A0SN-01 15 48435087 48435087 T C MYEF2 3'UTR 0.16 TCGA-A1-A0SN-01 15 90143862 90143862 A G TICRR Missense_Mutation p.K700R 0.23 deleterious(0.03) possibly_damaging(0.614) TCGA-A1-A0SN-01 16 30760196 30760196 G A PHKG2 Missense_Mutation p.E19K 0.40 tolerated(0.07) possibly_damaging(0.56) TCGA-A1-A0SN-01 17 16029439 16029439 C G NCOR1 Missense_Mutation p.E531Q 0.22 benign(0.25) TCGA-A1-A0SN-01 17 27061083 27061083 G C NEK8 Missense_Mutation p.E44Q 0.19 tolerated(0.11) benign(0.279) TCGA-A1-A0SN-01 17 38457154 38457154 G C CDC6 Missense_Mutation p.D442H 0.10 tolerated(0.19) benign(0.19) TCGA-A1-A0SN-01 17 38458209 38458209 G C CDC6 Missense_Mutation p.D547H 0.13 deleterious(0) probably_damaging(0.98) TCGA-A1-A0SN-01 17 38857431 38857431 G A KRT24 Silent p.F272F 0.17 TCGA-A1-A0SN-01 17 38857485 38857485 G C KRT24 Silent p.V254V 0.13 TCGA-A1-A0SN-01 17 61767679 61767679 C T MAP3K3 Silent p.F404F 0.03 TCGA-A1-A0SN-01 17 63554208 63554208 C G AXIN2 Missense_Mutation p.E177D 0.09 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SN-01 17 65850252 65850252 T C BPTF Silent p.F270F 0.15 TCGA-A1-A0SN-01 18 21735836 21735836 C T CABYR Missense_Mutation p.S124L 0.19 deleterious(0.04) benign(0.02) TCGA-A1-A0SN-01 19 16528799 16528799 G C EPS15L1 Missense_Mutation p.P356R 0.15 deleterious(0) possibly_damaging(0.873) TCGA-A1-A0SN-01 19 20116956 20116956 C T ZNF682 Missense_Mutation p.R452H 0.15 deleterious(0.02) benign(0.003) TCGA-A1-A0SN-01 19 37100782 37100782 C G ZNF382 Intron 0.41 TCGA-A1-A0SN-01 19 43258420 43258420 C T PSG8 3'UTR 0.16 TCGA-A1-A0SN-01 19 536247 536247 G A CDC34 Missense_Mutation p.G90E 0.18 deleterious(0) probably_damaging(1) TCGA-A1-A0SN-01 19 53741328 53741328 C T ZNF677 Missense_Mutation p.E218K 0.23 tolerated(0.05) benign(0.004) TCGA-A1-A0SN-01 19 55677342 55677342 C G DNAAF3 Missense_Mutation p.A106P 0.15 deleterious(0.01) possibly_damaging(0.809) TCGA-A1-A0SN-01 1 109538271 109538271 C T WDR47 Missense_Mutation p.S549N 0.26 deleterious(0.01) possibly_damaging(0.678) TCGA-A1-A0SN-01 1 11900338 11900338 C T CLCN6 3'UTR 0.23 TCGA-A1-A0SN-01 1 142804543 142804543 G A RP11-423O2.5 RNA 0.29 TCGA-A1-A0SN-01 1 152082372 152082372 C G TCHH Missense_Mutation p.E1107D 0.05 unknown(0) TCGA-A1-A0SN-01 1 153659695 153659695 A T NPR1 Missense_Mutation p.N652I 0.11 deleterious(0) probably_damaging(0.983) TCGA-A1-A0SN-01 1 155292503 155292503 C G RUSC1 Missense_Mutation p.I313M 0.11 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-A1-A0SN-01 1 172011231 172011231 G A DNM3 Missense_Mutation p.G359S 0.60 deleterious(0.01) probably_damaging(0.978) TCGA-A1-A0SN-01 1 180945656 180945656 C T STX6 3'UTR 0.78 TCGA-A1-A0SN-01 1 207317171 207317171 C T C4BPA Missense_Mutation p.R485W 0.16 tolerated(0.19) possibly_damaging(0.606) TCGA-A1-A0SN-01 1 207760830 207760830 G A CR1 Missense_Mutation p.R1877H 0.06 tolerated(0.48) benign(0.001) TCGA-A1-A0SN-01 1 24463632 24463632 G A IL22RA1 Missense_Mutation p.S115F 0.17 deleterious(0.02) possibly_damaging(0.852) TCGA-A1-A0SN-01 1 245583003 245583003 C T KIF26B Silent p.S374S 0.14 TCGA-A1-A0SN-01 1 51887632 51887632 G T EPS15 Intron 0.33 TCGA-A1-A0SN-01 20 18365188 18365188 T G DZANK1 Missense_Mutation p.K705T 0.27 deleterious(0.02) possibly_damaging(0.607) TCGA-A1-A0SN-01 20 34312573 34312573 G A RBM39 Silent p.V202V 0.23 TCGA-A1-A0SN-01 20 3649953 3649953 G T ADAM33 Missense_Mutation p.D799E 0.33 tolerated(1) benign(0) TCGA-A1-A0SN-01 20 5165585 5165585 C A CDS2 Silent p.L251L 0.11 TCGA-A1-A0SN-01 22 37770941 37770941 G A ELFN2 Missense_Mutation p.R212C 0.53 deleterious(0) probably_damaging(1) TCGA-A1-A0SN-01 2 179577214 179577214 C T TTN Nonsense_Mutation p.W9145* 0.33 TCGA-A1-A0SN-01 2 204001448 204001448 C A NBEAL1 Missense_Mutation p.P1477T 0.15 deleterious(0.01) benign(0.089) TCGA-A1-A0SN-01 2 97368459 97368459 C T LMAN2L 3'Flank 0.14 TCGA-A1-A0SN-01 3 119133124 119133124 C G ARHGAP31 Missense_Mutation p.P783R 0.22 deleterious(0.01) possibly_damaging(0.898) TCGA-A1-A0SN-01 3 56700312 56700312 G A FAM208A Missense_Mutation p.T333I 0.09 tolerated(0.31) benign(0.025) TCGA-A1-A0SN-01 3 57419477 57419477 A G DNAH12 Silent p.N1555N 0.38 TCGA-A1-A0SN-01 4 101439099 101439099 C G EMCN 5'UTR 0.18 TCGA-A1-A0SN-01 4 177069471 177069471 G A WDR17 Missense_Mutation p.G652S 0.36 tolerated(0.09) probably_damaging(1) TCGA-A1-A0SN-01 4 177605122 177605122 A T VEGFC Nonsense_Mutation p.C406* 0.08 TCGA-A1-A0SN-01 4 6863027 6863027 A T KIAA0232 Missense_Mutation p.L306F 0.27 tolerated(0.71) benign(0.009) TCGA-A1-A0SN-01 5 13865914 13865914 C A DNAH5 Missense_Mutation p.K1406N 0.11 possibly_damaging(0.728) TCGA-A1-A0SN-01 5 140596158 140596158 C T PCDHB13 3'UTR 0.32 TCGA-A1-A0SN-01 5 176812766 176812766 G T SLC34A1 Silent p.L8L 0.14 TCGA-A1-A0SN-01 6 100404004 100404004 G C MCHR2 Missense_Mutation p.S7C 0.25 deleterious(0.01) possibly_damaging(0.503) TCGA-A1-A0SN-01 6 30298612 30298612 C T TRIM39 Missense_Mutation p.R170C 0.16 tolerated(0.16) benign(0.001) TCGA-A1-A0SN-01 6 30613843 30613843 G C ATAT1 Splice_Site p.X338_splice 0.32 TCGA-A1-A0SN-01 6 30917380 30917380 C T DPCR1 Missense_Mutation p.P380L 0.13 deleterious(0.01) unknown(0) TCGA-A1-A0SN-01 7 123594426 123594426 C T SPAM1 Nonsense_Mutation p.Q268* 0.19 TCGA-A1-A0SN-01 7 126544645 126544645 T G GRM8 Missense_Mutation p.N274H 0.66 tolerated(0.08) possibly_damaging(0.876) TCGA-A1-A0SN-01 7 1512808 1512808 G A INTS1 Silent p.F1990F 0.23 TCGA-A1-A0SN-01 7 91631496 91631497 AG - AKAP9 Frame_Shift_Del p.E756Kfs*9 0.27 TCGA-A1-A0SN-01 8 56436404 56436404 C T XKR4 Missense_Mutation p.P524L 0.31 tolerated(0.16) benign(0.004) TCGA-A1-A0SN-01 9 125796809 125796809 C T GPR21 5'UTR 0.12 TCGA-A1-A0SN-01 X 131762534 131762534 C T HS6ST2 Missense_Mutation p.R552Q 0.43 tolerated_low_confidence(0.14) benign(0.006) TCGA-A1-A0SN-01 X 142795593 142795593 C G SPANXN2 Missense_Mutation p.E29Q 0.21 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-A1-A0SN-01 X 53265517 53265517 G C IQSEC2 Missense_Mutation p.D1146E 0.29 deleterious(0.01) probably_damaging(1) TCGA-A1-A0SN-01 X 70832365 70832365 G C ACRC Missense_Mutation p.K637N 0.19 unknown(0) TCGA-A1-A0SO-01 10 111642335 111642335 C A XPNPEP1 Missense_Mutation p.G299V 0.04 deleterious(0.02) benign(0.015) TCGA-A1-A0SO-01 10 112640989 112640989 A C PDCD4 Splice_Site p.X15_splice 0.09 TCGA-A1-A0SO-01 10 14880518 14880518 G T CDNF 5'Flank 0.64 TCGA-A1-A0SO-01 10 22675859 22675859 A G SPAG6 Missense_Mutation p.M217V 0.21 tolerated(0.07) benign(0.314) TCGA-A1-A0SO-01 10 25755604 25755604 C A GPR158 Missense_Mutation p.L454M 0.33 deleterious(0) probably_damaging(0.995) TCGA-A1-A0SO-01 10 27301905 27301905 T A ANKRD26 Missense_Mutation p.D1620V 0.04 tolerated(1) benign(0.001) TCGA-A1-A0SO-01 10 28274029 28274029 C T ARMC4 Missense_Mutation p.S165N 0.07 tolerated(0.61) benign(0.001) TCGA-A1-A0SO-01 10 55826517 55826517 T A PCDH15 Missense_Mutation p.K740N 0.52 deleterious(0.03) benign(0.043) TCGA-A1-A0SO-01 10 69881526 69881526 T A MYPN Missense_Mutation p.L111I 0.27 tolerated(0.22) benign(0.008) TCGA-A1-A0SO-01 10 79589152 79589152 C G DLG5 Missense_Mutation p.V716L 0.19 tolerated(0.55) benign(0.08) TCGA-A1-A0SO-01 10 88425489 88425489 G T OPN4 Missense_Mutation p.S484I 0.57 tolerated_low_confidence(0.09) benign(0.1) TCGA-A1-A0SO-01 11 102100587 102100587 T G YAP1 Silent p.A477A 0.07 TCGA-A1-A0SO-01 11 102647388 102647388 A G MMP10 Missense_Mutation p.F248L 0.08 tolerated(0.15) benign(0.035) TCGA-A1-A0SO-01 11 10602098 10602116 TCTTGAAGTTCTTTGGTCT - MRVI1 Frame_Shift_Del p.K794Tfs*2 0.15 TCGA-A1-A0SO-01 11 107424599 107424602 CAAT - ALKBH8 Frame_Shift_Del p.D157Gfs*14 0.17 TCGA-A1-A0SO-01 11 111385523 111385523 C A C11orf88 Missense_Mutation p.P5H 0.10 deleterious(0.04) benign(0.346) TCGA-A1-A0SO-01 11 114568988 114568988 C A NXPE2 Missense_Mutation p.N118K 0.10 deleterious(0.03) benign(0.279) TCGA-A1-A0SO-01 11 1262629 1262629 T G MUC5B Missense_Mutation p.C1507G 0.11 unknown(0) TCGA-A1-A0SO-01 11 1651807 1651807 T A KRTAP5-5 3'UTR 0.19 TCGA-A1-A0SO-01 11 3111849 3111849 T A OSBPL5 Silent p.G779G 0.14 TCGA-A1-A0SO-01 11 33667568 33667568 A T KIAA1549L Missense_Mutation p.S1619C 0.19 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SO-01 11 4842915 4842915 G T OR51F2 Missense_Mutation p.W100C 0.18 tolerated(0.14) probably_damaging(0.999) TCGA-A1-A0SO-01 11 57080433 57080433 C A TNKS1BP1 Missense_Mutation p.G577C 0.63 deleterious(0.04) possibly_damaging(0.847) TCGA-A1-A0SO-01 11 57466569 57466569 C G ZDHHC5 Nonsense_Mutation p.S554* 0.11 TCGA-A1-A0SO-01 11 59131936 59131936 C T OR5AN1 Missense_Mutation p.T2I 0.64 tolerated(0.36) benign(0.003) TCGA-A1-A0SO-01 11 63438856 63438856 A C ATL3 5'UTR 0.12 TCGA-A1-A0SO-01 11 67119477 67119477 A G POLD4 Missense_Mutation p.Y105H 0.26 deleterious(0.02) benign(0.061) TCGA-A1-A0SO-01 11 68181253 68181253 G A LRP5 Missense_Mutation p.S867N 0.11 deleterious(0.05) probably_damaging(0.926) TCGA-A1-A0SO-01 11 70118391 70118391 A C PPFIA1 Missense_Mutation p.Q38P 0.43 deleterious(0) probably_damaging(0.955) TCGA-A1-A0SO-01 11 93819195 93819195 G T HEPHL1 Missense_Mutation p.R640S 0.14 deleterious(0.01) benign(0.007) TCGA-A1-A0SO-01 11 94731831 94731831 C G KDM4D Missense_Mutation p.T432S 0.07 tolerated(0.51) benign(0.01) TCGA-A1-A0SO-01 12 122825432 122825432 G C CLIP1 Silent p.L773L 0.11 TCGA-A1-A0SO-01 12 123794118 123794118 C G SBNO1 Missense_Mutation p.G1152A 0.92 tolerated(0.17) benign(0.041) TCGA-A1-A0SO-01 12 123956889 123956913 TATAAATAAACATTTCTTTAGAGTT - RILPL1 3'UTR 0.57 TCGA-A1-A0SO-01 12 124114778 124114778 T C EIF2B1 Missense_Mutation p.R103G 0.10 deleterious(0) benign(0.14) TCGA-A1-A0SO-01 12 124824901 124824901 C A NCOR2 Missense_Mutation p.E1809D 0.66 benign(0.132) TCGA-A1-A0SO-01 12 133779830 133779830 A G ZNF268 Missense_Mutation p.R520G 0.74 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SO-01 12 22089486 22089486 A T ABCC9 Silent p.T41T 0.05 TCGA-A1-A0SO-01 12 49854729 49854729 C T SPATS2 5'UTR 0.29 TCGA-A1-A0SO-01 12 50297598 50297598 G A FAIM2 5'UTR 0.12 TCGA-A1-A0SO-01 12 5154349 5154349 T A KCNA5 Missense_Mutation p.C346S 0.25 tolerated(0.18) benign(0.264) TCGA-A1-A0SO-01 12 56118211 56118238 GCTACAGCCCAGGTTGGGATGCCAAGCT - RDH5 Frame_Shift_Del p.Y281Sfs*64 0.50 TCGA-A1-A0SO-01 12 6925542 6925542 C A CD4 Missense_Mutation p.Q310K 0.17 tolerated(0.07) probably_damaging(0.975) TCGA-A1-A0SO-01 12 7087585 7087628 TCATGTTGGCACAGGCATCCCACTTTGCCTTGCCCTTTTCTTCA - LPCAT3 Frame_Shift_Del p.F305Lfs*6 0.29 TCGA-A1-A0SO-01 12 71526567 71526567 C A TSPAN8 Missense_Mutation p.W161L 0.12 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 12 77236736 77236736 T A ZDHHC17 Missense_Mutation p.L435H 0.20 tolerated(0.54) possibly_damaging(0.864) TCGA-A1-A0SO-01 12 78604291 78604291 C A NAV3 Silent p.T2362T 0.20 TCGA-A1-A0SO-01 12 8211627 8211627 G T C3AR1 Silent p.V385V 0.09 TCGA-A1-A0SO-01 12 8994108 8994108 G C A2ML1 Missense_Mutation p.W408C 0.19 deleterious(0) probably_damaging(0.91) TCGA-A1-A0SO-01 13 103387791 103387791 C A CCDC168 Missense_Mutation p.D457Y 0.06 deleterious(0.01) probably_damaging(0.934) TCGA-A1-A0SO-01 13 109672187 109672187 G C MYO16 Missense_Mutation p.M886I 0.06 tolerated(0.51) benign(0.004) TCGA-A1-A0SO-01 13 113030731 113030731 G T SPACA7 Missense_Mutation p.C11F 0.05 tolerated(0.2) probably_damaging(0.983) TCGA-A1-A0SO-01 13 26154071 26154071 G C ATP8A2 Missense_Mutation p.E665Q 0.05 deleterious(0.05) probably_damaging(0.912) TCGA-A1-A0SO-01 13 31231644 31231690 CATGTTCTGAAAGGCACAAGAAATTTGAAGTTCCTGCTTCAGAGATA - USPL1 Frame_Shift_Del p.C478Yfs*14 0.10 TCGA-A1-A0SO-01 13 32818202 32818218 TGTGCAGCAGCCCCTGC - FRY Frame_Shift_Del p.V2238Pfs*29 0.31 TCGA-A1-A0SO-01 13 77672956 77672956 T A MYCBP2 Missense_Mutation p.K2740M 0.15 probably_damaging(0.997) TCGA-A1-A0SO-01 13 98828564 98828564 C T RNF113B Silent p.A309A 0.10 TCGA-A1-A0SO-01 14 103601617 103601617 C T TNFAIP2 Missense_Mutation p.R629C 0.15 deleterious(0) benign(0.019) TCGA-A1-A0SO-01 14 106926367 106926367 C A IGHV3-43 Missense_Mutation p.A59S 0.04 deleterious_low_confidence(0.03) benign(0.361) TCGA-A1-A0SO-01 14 22740397 22740397 G A TRAV38-1 Missense_Mutation p.D101N 0.12 tolerated(0.34) possibly_damaging(0.742) TCGA-A1-A0SO-01 14 22971278 22971278 T A TRAJ36 5'Flank 0.07 TCGA-A1-A0SO-01 14 23523514 23523514 C G CDH24 Missense_Mutation p.E270Q 0.31 deleterious(0) possibly_damaging(0.878) TCGA-A1-A0SO-01 14 23898233 23898233 G A MYH7 Silent p.T446T 0.20 TCGA-A1-A0SO-01 14 24617315 24617315 C A RNF31 Missense_Mutation p.T108K 0.16 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 14 24897064 24897064 C T CBLN3 Silent p.L183L 0.06 TCGA-A1-A0SO-01 14 31642890 31642890 A G HECTD1 Silent p.A242A 0.08 TCGA-A1-A0SO-01 14 36960496 36960496 C A SFTA3 Missense_Mutation p.V15F 0.16 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-A1-A0SO-01 14 67854072 67854081 TCCACTCGGC - PLEK2 Frame_Shift_Del p.A343Lfs*7 0.16 TCGA-A1-A0SO-01 14 74371680 74371680 C T ZNF410 Silent p.H286H 0.34 TCGA-A1-A0SO-01 14 77808211 77808211 T C TMED8 Missense_Mutation p.D294G 0.73 tolerated(0.06) probably_damaging(0.987) TCGA-A1-A0SO-01 15 100516261 100516261 G A ADAMTS17 Missense_Mutation p.S1039F 0.22 deleterious(0) possibly_damaging(0.828) TCGA-A1-A0SO-01 15 34355438 34355438 G - CHRM5 Frame_Shift_Del p.K175Sfs*35 0.47 TCGA-A1-A0SO-01 15 45453997 45453997 G A DUOX1 Silent p.V1306V 0.73 TCGA-A1-A0SO-01 15 51984365 51984365 G T SCG3 Missense_Mutation p.A234S 0.79 tolerated_low_confidence(0.71) benign(0.297) TCGA-A1-A0SO-01 15 64428539 64428539 G C SNX1 Missense_Mutation p.R459P 0.47 deleterious(0) probably_damaging(0.962) TCGA-A1-A0SO-01 15 65627649 65627649 C T IGDCC3 Missense_Mutation p.G222E 0.07 tolerated(1) benign(0.04) TCGA-A1-A0SO-01 15 69328237 69328237 C T NOX5 Silent p.I383I 0.16 TCGA-A1-A0SO-01 15 72767007 72767007 C A ARIH1 Nonsense_Mutation p.Y9* 0.07 TCGA-A1-A0SO-01 15 73624616 73624616 G A HCN4 Silent p.Y409Y 0.39 TCGA-A1-A0SO-01 15 74476323 74476323 G A STRA6 Missense_Mutation p.L431F 0.40 deleterious(0) probably_damaging(0.992) TCGA-A1-A0SO-01 15 75632150 75632150 G A COMMD4 Missense_Mutation p.A164T 0.27 tolerated(0.3) benign(0.002) TCGA-A1-A0SO-01 15 83698916 83698916 C A BTBD1 Missense_Mutation p.G343C 0.05 deleterious(0.01) probably_damaging(1) TCGA-A1-A0SO-01 15 84706590 84706590 G T ADAMTSL3 3'UTR 0.08 TCGA-A1-A0SO-01 15 85438332 85438332 C T SLC28A1 Missense_Mutation p.R147C 0.23 tolerated(0.11) benign(0.002) TCGA-A1-A0SO-01 15 90446465 90446465 C T C15orf38-AP3S2 Missense_Mutation p.A219T 0.19 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-A1-A0SO-01 16 19651363 19651363 G T C16orf62 Missense_Mutation p.M664I 0.15 deleterious(0.01) possibly_damaging(0.492) TCGA-A1-A0SO-01 16 20635525 20635525 A T ACSM1 Missense_Mutation p.F514I 0.06 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SO-01 16 2122250 2122250 C A TSC2 Missense_Mutation p.D702E 0.09 deleterious(0.01) benign(0.05) TCGA-A1-A0SO-01 16 21896613 21896613 G A snoU13 3'Flank 0.22 TCGA-A1-A0SO-01 16 22324940 22324942 GGT - POLR3E Splice_Site p.X122_splice 0.09 TCGA-A1-A0SO-01 16 24366196 24366196 C T CACNG3 Missense_Mutation p.T113M 0.15 tolerated(0.05) benign(0.264) TCGA-A1-A0SO-01 16 2817240 2817240 G A SRRM2 Silent p.A2237A 0.37 TCGA-A1-A0SO-01 16 28854300 28854300 C T TUFM Missense_Mutation p.G455D 0.10 deleterious_low_confidence(0) benign(0.261) TCGA-A1-A0SO-01 16 28880371 28880376 GCATGT - SH2B1 In_Frame_Del p.H363_V364del 0.08 TCGA-A1-A0SO-01 16 28944399 28944399 C G CD19 Missense_Mutation p.P175A 0.30 deleterious_low_confidence(0.04) benign(0.024) TCGA-A1-A0SO-01 16 58554733 58554733 T C CNOT1 3'UTR 0.38 TCGA-A1-A0SO-01 16 81157361 81157361 A G PKD1L2 RNA 0.05 TCGA-A1-A0SO-01 16 82069075 82069075 C A HSD17B2 Missense_Mutation p.P16T 0.11 tolerated(1) benign(0.001) TCGA-A1-A0SO-01 17 10209878 10209878 C T MYH13 Silent p.K1788K 0.09 TCGA-A1-A0SO-01 17 10348650 10348652 CTT - MYH4 In_Frame_Del p.K1733del 0.15 TCGA-A1-A0SO-01 17 11515049 11515049 A T DNAH9 Missense_Mutation p.S286C 0.15 probably_damaging(0.999) TCGA-A1-A0SO-01 17 11786995 11786995 C A DNAH9 Missense_Mutation p.N3633K 0.37 benign(0.158) TCGA-A1-A0SO-01 17 13399637 13399637 C A HS3ST3A1 Missense_Mutation p.K366N 0.35 deleterious(0.01) benign(0.427) TCGA-A1-A0SO-01 17 27065227 27065227 G T NEK8 Missense_Mutation p.V396L 0.11 tolerated(0.08) benign(0.104) TCGA-A1-A0SO-01 17 33310177 33310177 G T LIG3 Silent p.L51L 0.38 TCGA-A1-A0SO-01 17 34182707 34182707 G C C17orf66 Missense_Mutation p.D442E 0.17 tolerated(0.32) probably_damaging(1) TCGA-A1-A0SO-01 17 39553726 39553726 C A KRT31 Silent p.V22V 0.19 TCGA-A1-A0SO-01 17 39645694 39645694 C A KRT36 Missense_Mutation p.Q141H 0.15 deleterious(0.03) probably_damaging(0.969) TCGA-A1-A0SO-01 17 39889028 39889028 C T HAP1 Silent p.P164P 0.24 TCGA-A1-A0SO-01 17 41276033 41276033 C T BRCA1 Splice_Site p.X27_splice 0.91 TCGA-A1-A0SO-01 17 46673734 46673734 C T HOXB6 3'UTR 0.15 TCGA-A1-A0SO-01 17 47297295 47297295 G A ABI3 Silent p.A208A 0.63 TCGA-A1-A0SO-01 17 48741141 48741141 C T ABCC3 Silent p.I366I 0.03 TCGA-A1-A0SO-01 17 57049573 57049573 G T PPM1E Missense_Mutation p.Q351H 0.06 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SO-01 17 57288043 57288043 C A SMG8 Missense_Mutation p.L211I 0.38 tolerated(0.35) benign(0.432) TCGA-A1-A0SO-01 17 59793371 59793371 T G BRIP1 Silent p.L811L 0.94 TCGA-A1-A0SO-01 17 61958115 61958115 C A GH2 Missense_Mutation p.G158V 0.12 deleterious(0.04) probably_damaging(1) TCGA-A1-A0SO-01 17 62856626 62856626 T C LRRC37A3 Missense_Mutation p.E1213G 0.83 deleterious(0.03) probably_damaging(0.986) TCGA-A1-A0SO-01 17 63200288 63200288 C T RGS9 Silent p.L358L 0.16 TCGA-A1-A0SO-01 17 65144684 65144684 C A HELZ Splice_Site p.X874_splice 0.29 TCGA-A1-A0SO-01 17 73826658 73826658 C T UNC13D Splice_Site p.X903_splice 0.07 TCGA-A1-A0SO-01 17 74006094 74006094 C G EVPL Missense_Mutation p.E1064D 0.97 deleterious(0.02) probably_damaging(0.996) TCGA-A1-A0SO-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.87 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 17 76967712 76967712 G T LGALS3BP Silent p.G568G 0.07 TCGA-A1-A0SO-01 17 77809031 77809031 C T CBX4 Missense_Mutation p.R137Q 0.19 tolerated(0.39) benign(0.013) TCGA-A1-A0SO-01 17 78059826 78059826 C A CCDC40 Missense_Mutation p.L754I 0.07 tolerated(0.64) benign(0.007) TCGA-A1-A0SO-01 17 7980479 7980479 G T ALOX12B Silent p.I368I 0.71 TCGA-A1-A0SO-01 17 80574405 80574405 A C WDR45B Missense_Mutation p.V308G 0.14 deleterious(0) probably_damaging(0.917) TCGA-A1-A0SO-01 18 2802571 2802571 C T SMCHD1 3'UTR 0.39 TCGA-A1-A0SO-01 18 31324097 31324097 C A ASXL3 Missense_Mutation p.P1429T 0.49 benign(0.11) TCGA-A1-A0SO-01 18 33267013 33267013 C T GALNT1 Silent p.I241I 0.24 TCGA-A1-A0SO-01 18 33726241 33726241 C G ELP2 Missense_Mutation p.T406S 0.14 tolerated(0.19) probably_damaging(0.928) TCGA-A1-A0SO-01 18 54444046 54444046 C G WDR7 Missense_Mutation p.A961G 0.24 tolerated(0.06) benign(0) TCGA-A1-A0SO-01 18 55274697 55274697 G T NARS Missense_Mutation p.F260L 0.47 tolerated(0.11) benign(0.13) TCGA-A1-A0SO-01 18 60795751 60795751 C T BCL2 3'UTR 0.33 TCGA-A1-A0SO-01 18 60985588 60985588 G A BCL2 Silent p.F104F 0.11 TCGA-A1-A0SO-01 19 10224439 10224439 G T PPAN-P2RY11 Silent p.L470L 0.36 TCGA-A1-A0SO-01 19 10665770 10665770 G T KRI1 Silent p.R598R 0.05 TCGA-A1-A0SO-01 19 12461308 12461308 A T ZNF442 Missense_Mutation p.L364Q 0.10 deleterious(0.01) probably_damaging(0.967) TCGA-A1-A0SO-01 19 12867020 12867020 G C BEST2 Missense_Mutation p.W338C 0.10 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SO-01 19 17015092 17015092 C A CPAMD8 Missense_Mutation p.V1446L 0.39 tolerated(0.05) benign(0.024) TCGA-A1-A0SO-01 19 19232393 19232393 C G TMEM161A Silent p.L247L 0.09 TCGA-A1-A0SO-01 19 20976736 20976736 G A ZNF66 Intron 0.22 TCGA-A1-A0SO-01 19 21281038 21281038 G A ZNF714 5'UTR 0.69 TCGA-A1-A0SO-01 19 22780092 22780102 GACTATCAGTG - RN7SL860P 5'Flank 0.30 TCGA-A1-A0SO-01 19 36352899 36352899 G T KIRREL2 Missense_Mutation p.G495C 0.24 tolerated(0.06) benign(0.353) TCGA-A1-A0SO-01 19 38104106 38104106 A G ZNF540 Missense_Mutation p.K642R 0.07 deleterious(0.03) probably_damaging(0.981) TCGA-A1-A0SO-01 19 38621312 38621312 G A SIPA1L3 Missense_Mutation p.V1015M 0.75 deleterious(0) probably_damaging(0.991) TCGA-A1-A0SO-01 19 40412161 40412161 A C FCGBP Missense_Mutation p.L1156R 0.11 probably_damaging(0.997) TCGA-A1-A0SO-01 19 40587737 40587737 C A ZNF780A Missense_Mutation p.R75I 0.12 tolerated(0.19) possibly_damaging(0.656) TCGA-A1-A0SO-01 19 40889772 40889772 T A HIPK4 Missense_Mutation p.H247L 0.17 tolerated(0.55) benign(0.009) TCGA-A1-A0SO-01 19 41072203 41072203 G C SPTBN4 Missense_Mutation p.A2092P 0.10 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SO-01 19 4493843 4493843 G T HDGFRP2 Silent p.P274P 0.21 TCGA-A1-A0SO-01 19 49344514 49344514 G C PLEKHA4 Silent p.R599R 0.14 TCGA-A1-A0SO-01 19 52519873 52519873 C A ZNF614 Silent p.V326V 0.07 TCGA-A1-A0SO-01 19 52919021 52919021 T G ZNF528 Missense_Mutation p.F306V 0.11 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SO-01 19 54314363 54314363 C T NLRP12 Missense_Mutation p.A184T 0.51 tolerated(0.25) benign(0.022) TCGA-A1-A0SO-01 19 54376827 54376827 C G MYADM Missense_Mutation p.T15R 0.07 deleterious(0.04) benign(0.007) TCGA-A1-A0SO-01 19 56024423 56024423 C A SSC5D Nonsense_Mutation p.S944* 0.30 TCGA-A1-A0SO-01 19 57646573 57646573 G A ZIM3 Missense_Mutation p.L378F 0.11 tolerated(0.06) probably_damaging(0.98) TCGA-A1-A0SO-01 19 8026861 8026896 TTTGTGATTCTCTCTGTAAACTAGTTATTTATAAAC - ELAVL1 3'UTR 0.33 TCGA-A1-A0SO-01 1 110301155 110301155 G T EPS8L3 Missense_Mutation p.L199I 0.12 tolerated(0.14) benign(0.066) TCGA-A1-A0SO-01 1 112323354 112323354 G C KCND3 Missense_Mutation p.H443Q 0.05 tolerated(1) possibly_damaging(0.537) TCGA-A1-A0SO-01 1 114447319 114447319 C T AP4B1 Silent p.E7E 0.14 TCGA-A1-A0SO-01 1 114514630 114514630 C T HIPK1 Intron 0.11 TCGA-A1-A0SO-01 1 115487026 115487026 C G SYCP1 Missense_Mutation p.Q665E 0.11 tolerated(0.07) possibly_damaging(0.688) TCGA-A1-A0SO-01 1 116245613 116245613 C T CASQ2 Missense_Mutation p.V315I 0.12 tolerated(0.67) benign(0.004) TCGA-A1-A0SO-01 1 12343711 12343711 T C VPS13D Missense_Mutation p.I1851T 0.18 benign(0) TCGA-A1-A0SO-01 1 12907909 12907909 C G HNRNPCL1 Missense_Mutation p.Q78H 0.30 deleterious(0.03) benign(0.088) TCGA-A1-A0SO-01 1 147090653 147090653 C T BCL9 Missense_Mutation p.P231L 0.10 tolerated(0.13) benign(0) TCGA-A1-A0SO-01 1 149899739 149899739 C G SF3B4 5'UTR 0.09 TCGA-A1-A0SO-01 1 150916412 150916412 G T SETDB1 Missense_Mutation p.D298Y 0.19 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 1 151820661 151820661 T C THEM5 Missense_Mutation p.K191R 0.05 tolerated(0.15) benign(0.086) TCGA-A1-A0SO-01 1 160580520 160580520 C A SLAMF1 3'UTR 0.10 TCGA-A1-A0SO-01 1 161069131 161069156 CACAGCTACAAGCAAGAAGGCTGCCA - KLHDC9 Splice_Site p.X177_splice 0.16 TCGA-A1-A0SO-01 1 16748558 16748558 G C SPATA21 Intron 0.90 TCGA-A1-A0SO-01 1 16902850 16902850 C G NBPF1 Missense_Mutation p.E677D 0.06 tolerated(0.91) probably_damaging(0.917) TCGA-A1-A0SO-01 1 173808592 173808592 G C DARS2 Missense_Mutation p.D310H 0.33 tolerated(0.17) benign(0.027) TCGA-A1-A0SO-01 1 197128698 197128698 G C ZBTB41 Missense_Mutation p.P841A 0.10 tolerated_low_confidence(0.4) benign(0) TCGA-A1-A0SO-01 1 197641200 197641200 G A DENND1B Missense_Mutation p.T88M 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-A1-A0SO-01 1 201184703 201184703 T A IGFN1 Missense_Mutation p.L3011Q 0.17 probably_damaging(0.999) TCGA-A1-A0SO-01 1 202705472 202705472 G C KDM5B Missense_Mutation p.R1045G 0.05 tolerated(0.07) benign(0.273) TCGA-A1-A0SO-01 1 205797837 205797837 C A PM20D1 Missense_Mutation p.A474S 0.51 tolerated(0.24) benign(0.014) TCGA-A1-A0SO-01 1 205814011 205814011 G A PM20D1 Silent p.A168A 0.93 TCGA-A1-A0SO-01 1 20656787 20656787 C G VWA5B1 Missense_Mutation p.P457A 0.05 deleterious(0.02) probably_damaging(0.995) TCGA-A1-A0SO-01 1 207095194 207095194 G A FAIM3 Silent p.D2D 0.05 TCGA-A1-A0SO-01 1 227751262 227751262 T A ZNF678 5'UTR 0.12 TCGA-A1-A0SO-01 1 228561695 228561695 C T OBSCN Silent p.L8413L 0.17 TCGA-A1-A0SO-01 1 243328748 243328748 G T CEP170 Missense_Mutation p.S838R 0.42 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SO-01 1 29475392 29475392 C T SRSF4 Missense_Mutation p.G339S 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-A1-A0SO-01 1 32086466 32086466 T A HCRTR1 Missense_Mutation p.V134E 0.10 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SO-01 1 33359202 33359202 C A HPCA Silent p.I152I 0.25 TCGA-A1-A0SO-01 1 35653669 35653670 TT - SFPQ Frame_Shift_Del p.E575Gfs*9 0.30 TCGA-A1-A0SO-01 1 36031100 36031100 C G NCDN Missense_Mutation p.P676A 0.29 tolerated(0.1) benign(0.036) TCGA-A1-A0SO-01 1 36307019 36307019 C T AGO4 Missense_Mutation p.R660C 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-A1-A0SO-01 1 54433480 54433480 C G LRRC42 Missense_Mutation p.S385R 0.50 tolerated(0.65) benign(0.1) TCGA-A1-A0SO-01 1 57333339 57333339 A G C8A Silent p.S45S 0.05 TCGA-A1-A0SO-01 1 63300523 63300523 G A ATG4C Silent p.E363E 0.34 TCGA-A1-A0SO-01 1 78546542 78546546 AAGGT - GIPC2 Splice_Site p.X142_splice 0.48 TCGA-A1-A0SO-01 1 84394901 84394901 G C TTLL7 Missense_Mutation p.P354A 0.08 deleterious(0) probably_damaging(0.996) TCGA-A1-A0SO-01 1 92634546 92634546 C T KIAA1107 Nonsense_Mutation p.Q85* 0.89 TCGA-A1-A0SO-01 20 19937296 19937296 G C RIN2 Missense_Mutation p.E115Q 0.09 tolerated_low_confidence(0.16) benign(0.075) TCGA-A1-A0SO-01 20 20278966 20278966 C A C20orf26 Missense_Mutation p.H1120N 0.04 deleterious(0.03) probably_damaging(0.971) TCGA-A1-A0SO-01 20 23545435 23545435 A T CST9L 3'UTR 0.13 TCGA-A1-A0SO-01 20 33573918 33573918 C T MYH7B Missense_Mutation p.S316L 0.05 probably_damaging(0.999) TCGA-A1-A0SO-01 20 33764173 33764173 G A PROCR Silent p.R175R 0.19 TCGA-A1-A0SO-01 20 40033370 40033370 G C CHD6 Missense_Mutation p.P2671A 0.35 tolerated_low_confidence(0.15) benign(0.196) TCGA-A1-A0SO-01 20 43927146 43927146 C A MATN4 Missense_Mutation p.V364L 0.13 probably_damaging(0.99) TCGA-A1-A0SO-01 20 45717926 45717926 A T EYA2 Missense_Mutation p.D237V 0.10 deleterious(0.01) possibly_damaging(0.72) TCGA-A1-A0SO-01 20 55093275 55093275 A T RTFDC1 Missense_Mutation p.K292M 0.17 deleterious(0) probably_damaging(0.967) TCGA-A1-A0SO-01 20 56227204 56227204 C A PMEPA1 Nonsense_Mutation p.E257* 0.81 TCGA-A1-A0SO-01 20 57566984 57566989 GCTGTC - NELFCD In_Frame_Del p.A398_V399del 0.10 TCGA-A1-A0SO-01 20 57899481 57899482 CC A EDN3 Nonsense_Mutation p.C228* 0.13 TCGA-A1-A0SO-01 21 10934064 10934064 C T TPTE Missense_Mutation p.D305N 0.04 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SO-01 21 15872964 15872964 A G SAMSN1 Silent p.Y286Y 0.24 TCGA-A1-A0SO-01 21 19638419 19638452 CAATAGCTTGGAATGGCTTGAAATCACAAAGGAT - CHODL 3'UTR 0.22 TCGA-A1-A0SO-01 21 28212817 28212817 C G ADAMTS1 Silent p.S481S 0.15 TCGA-A1-A0SO-01 21 39775576 39775576 T A ERG Missense_Mutation p.K155N 0.25 deleterious(0.04) possibly_damaging(0.764) TCGA-A1-A0SO-01 21 46021285 46021285 G T KRTAP10-7 Missense_Mutation p.C255F 0.14 deleterious(0) unknown(0) TCGA-A1-A0SO-01 22 21150531 21150531 T C PI4KA Missense_Mutation p.D727G 0.17 tolerated(0.44) benign(0.306) TCGA-A1-A0SO-01 22 21150532 21150532 C A PI4KA Missense_Mutation p.D727Y 0.15 tolerated(1) benign(0.043) TCGA-A1-A0SO-01 22 23115021 23115021 C A IGLV3-12 Missense_Mutation p.A98D 0.39 deleterious(0.01) benign(0.324) TCGA-A1-A0SO-01 22 24627424 24627424 C A GGT5 Missense_Mutation p.D277Y 0.13 deleterious(0) possibly_damaging(0.836) TCGA-A1-A0SO-01 22 25577676 25577676 A G KIAA1671 Silent p.S1695S 0.15 TCGA-A1-A0SO-01 22 26307000 26307000 G A MYO18B Missense_Mutation p.G1783R 0.11 deleterious(0.02) probably_damaging(0.914) TCGA-A1-A0SO-01 22 37322204 37322204 A T CSF2RB Missense_Mutation p.T126S 0.15 tolerated(0.42) benign(0.02) TCGA-A1-A0SO-01 22 40075213 40075213 C T CACNA1I Silent p.F1719F 0.24 TCGA-A1-A0SO-01 22 40139929 40139929 G T ENTHD1 Missense_Mutation p.L527M 0.65 tolerated(0.59) benign(0.018) TCGA-A1-A0SO-01 22 41635537 41635537 G A CHADL Silent p.R32R 0.21 TCGA-A1-A0SO-01 2 128400501 128400501 C G LIMS2 Missense_Mutation p.C193S 0.09 deleterious(0) benign(0.285) TCGA-A1-A0SO-01 2 131520314 131520314 G A AMER3 Silent p.L223L 0.45 TCGA-A1-A0SO-01 2 136575337 136575337 C T LCT Silent p.E427E 0.20 TCGA-A1-A0SO-01 2 160086123 160086123 G C TANC1 Missense_Mutation p.A1396P 0.14 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 2 167322362 167322362 C T SCN7A Missense_Mutation p.C267Y 0.38 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 2 175689201 175689201 A T CHN1 Missense_Mutation p.F225I 0.23 deleterious(0) probably_damaging(0.997) TCGA-A1-A0SO-01 2 179428167 179428167 C T TTN Silent p.A27564A 0.93 TCGA-A1-A0SO-01 2 179558410 179558410 T A TTN Missense_Mutation p.E10507V 0.11 TCGA-A1-A0SO-01 2 203560685 203560685 A T FAM117B Missense_Mutation p.Y228F 0.21 deleterious(0.01) probably_damaging(0.915) TCGA-A1-A0SO-01 2 213872586 213872586 T A IKZF2 Missense_Mutation p.H360L 0.11 tolerated(0.34) benign(0.316) TCGA-A1-A0SO-01 2 219029170 219029170 C A CXCR1 Missense_Mutation p.W255C 0.60 deleterious(0.02) probably_damaging(0.92) TCGA-A1-A0SO-01 2 219029171 219029171 C A CXCR1 Missense_Mutation p.W255L 0.60 deleterious(0) probably_damaging(0.989) TCGA-A1-A0SO-01 2 228147120 228147120 T A COL4A3 Missense_Mutation p.I843N 0.11 unknown(0) TCGA-A1-A0SO-01 2 32422433 32422433 C T SLC30A6 Nonsense_Mutation p.Q213* 0.06 TCGA-A1-A0SO-01 2 42284801 42284801 G A PKDCC Silent p.K485K 0.16 TCGA-A1-A0SO-01 2 55106696 55106696 G A EML6 Missense_Mutation p.C786Y 0.10 tolerated(1) benign(0.025) TCGA-A1-A0SO-01 2 55253457 55253457 G T RTN4 Missense_Mutation p.A593E 0.45 deleterious(0.01) benign(0.184) TCGA-A1-A0SO-01 2 55599637 55599637 G C CCDC88A Missense_Mutation p.T118R 0.05 deleterious(0) possibly_damaging(0.713) TCGA-A1-A0SO-01 2 55771103 55771103 A G CCDC104 Missense_Mutation p.I224V 0.25 tolerated(1) benign(0) TCGA-A1-A0SO-01 2 61415828 61415828 A T USP34 Silent p.T3350T 0.16 TCGA-A1-A0SO-01 2 69040480 69040480 C A ARHGAP25 Missense_Mutation p.P246T 0.15 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 2 71163143 71163143 G T ATP6V1B1 Missense_Mutation p.G20V 0.10 deleterious_low_confidence(0.02) benign(0) TCGA-A1-A0SO-01 2 71795113 71795113 G A DYSF Missense_Mutation p.M866I 0.46 tolerated(1) benign(0.002) TCGA-A1-A0SO-01 2 73898207 73898207 T A ALMS1P Intron 0.07 TCGA-A1-A0SO-01 2 74274554 74274554 T A TET3 Missense_Mutation p.S369T 0.08 deleterious(0.04) benign(0.005) TCGA-A1-A0SO-01 2 75425803 75425803 T A TACR1 Silent p.T86T 0.12 TCGA-A1-A0SO-01 2 85023529 85023529 A G DNAH6 Missense_Mutation p.D3780G 0.09 tolerated(0.52) benign(0.001) TCGA-A1-A0SO-01 2 86479180 86479180 C A REEP1 Missense_Mutation p.C113F 0.13 tolerated(0.11) benign(0) TCGA-A1-A0SO-01 2 95494812 95494812 T A ANKRD20A8P RNA 0.25 TCGA-A1-A0SO-01 3 107466845 107466845 A G BBX Missense_Mutation p.T262A 0.41 tolerated(0.78) benign(0.001) TCGA-A1-A0SO-01 3 108812333 108812333 C A MORC1 Missense_Mutation p.L213F 0.50 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 3 120315286 120315286 C T NDUFB4 Missense_Mutation p.P27L 0.85 tolerated(0.19) benign(0.021) TCGA-A1-A0SO-01 3 121415745 121415745 C A GOLGB1 Nonsense_Mutation p.E1209* 0.17 TCGA-A1-A0SO-01 3 123512607 123512607 G T MYLK Missense_Mutation p.P28T 0.42 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-A1-A0SO-01 3 148712063 148712063 A T GYG1 Nonsense_Mutation p.R48* 0.10 TCGA-A1-A0SO-01 3 151154628 151154628 C T IGSF10 Missense_Mutation p.S2574N 0.07 tolerated(0.68) benign(0.013) TCGA-A1-A0SO-01 3 156877716 156877716 G T CCNL1 Missense_Mutation p.H56Q 0.05 deleterious(0) benign(0.078) TCGA-A1-A0SO-01 3 172165999 172165999 A T GHSR Missense_Mutation p.S69T 0.08 tolerated(0.41) benign(0.034) TCGA-A1-A0SO-01 3 184298584 184298584 G C EPHB3 Missense_Mutation p.S819T 0.09 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 3 184299147 184299147 G T EPHB3 Missense_Mutation p.V947F 0.10 deleterious(0.04) benign(0.244) TCGA-A1-A0SO-01 3 189038590 189038590 G A TPRG1 Missense_Mutation p.R270H 0.07 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SO-01 3 195400839 195400839 C T SDHAP2 RNA 0.09 TCGA-A1-A0SO-01 3 196387493 196387493 C G NRROS Missense_Mutation p.L327V 0.12 deleterious(0.02) possibly_damaging(0.614) TCGA-A1-A0SO-01 3 196743115 196743115 C T MFI2 Silent p.A342A 0.36 TCGA-A1-A0SO-01 3 44598527 44598527 C A ZKSCAN7 5'UTR 0.21 TCGA-A1-A0SO-01 3 47041418 47041422 CTTCT - NBEAL2 Frame_Shift_Del p.L1277Gfs*45 0.21 TCGA-A1-A0SO-01 3 48638832 48638852 CTGCATATGTCCATGGGATGC - UQCRC1 In_Frame_Del p.G252_A258del 0.17 TCGA-A1-A0SO-01 3 65361513 65361513 C A MAGI1 Nonsense_Mutation p.G1035* 0.04 TCGA-A1-A0SO-01 4 103571841 103571841 G A MANBA Silent p.D574D 0.04 TCGA-A1-A0SO-01 4 122589481 122589481 T A ANXA5 3'UTR 0.19 TCGA-A1-A0SO-01 4 123329171 123329171 G C ADAD1 Missense_Mutation p.R278T 0.07 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 4 151145689 151145689 C G DCLK2 Missense_Mutation p.D443E 0.87 deleterious(0) possibly_damaging(0.557) TCGA-A1-A0SO-01 4 183522142 183522142 T A TENM3 Missense_Mutation p.S193T 0.90 tolerated_low_confidence(0.72) benign(0.011) TCGA-A1-A0SO-01 4 187159474 187159474 G A KLKB1 Missense_Mutation p.V185M 0.20 deleterious(0) possibly_damaging(0.868) TCGA-A1-A0SO-01 4 60012 60012 T A ZNF595 Missense_Mutation p.N64K 0.03 tolerated_low_confidence(0.14) benign(0.034) TCGA-A1-A0SO-01 4 80993727 80993727 G A ANTXR2 5'Flank 0.40 TCGA-A1-A0SO-01 4 89597532 89597532 C T HERC3 Silent p.A661A 0.33 TCGA-A1-A0SO-01 4 96199426 96199426 C G UNC5C Missense_Mutation p.G193A 0.10 tolerated(0.06) benign(0.437) TCGA-A1-A0SO-01 5 13868016 13868016 T A DNAH5 Missense_Mutation p.E1307V 0.49 benign(0.403) TCGA-A1-A0SO-01 5 141329074 141329074 G A PCDH12 Missense_Mutation p.P1018L 0.18 tolerated(0.09) benign(0.002) TCGA-A1-A0SO-01 5 148730799 148730817 GGCTTGCCCGAGTGGAAGT - GRPEL2 Frame_Shift_Del p.L212Qfs*30 0.55 TCGA-A1-A0SO-01 5 153085287 153085303 ATCACTTTGGTCCGGGA - GRIA1 Frame_Shift_Del p.I505Rfs*19 0.82 TCGA-A1-A0SO-01 5 156184694 156184694 A G SGCD Silent p.R226R 0.41 TCGA-A1-A0SO-01 5 156890274 156890274 C T NIPAL4 Silent p.I132I 0.87 TCGA-A1-A0SO-01 5 180475204 180475204 C A BTNL9 Silent p.G129G 0.20 TCGA-A1-A0SO-01 5 19503214 19503214 A C CDH18 Missense_Mutation p.I506S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-A1-A0SO-01 5 205576 205576 C A CCDC127 Missense_Mutation p.A207S 0.20 tolerated(0.72) benign(0.008) TCGA-A1-A0SO-01 5 34864618 34864618 G C TTC23L Missense_Mutation p.V205L 0.07 tolerated(0.11) benign(0.005) TCGA-A1-A0SO-01 5 36211996 36211996 C T NADK2 Silent p.L270L 0.10 TCGA-A1-A0SO-01 5 38464166 38464166 T C EGFLAM 3'UTR 0.12 TCGA-A1-A0SO-01 5 44388749 44388749 G T FGF10 Silent p.A12A 0.10 TCGA-A1-A0SO-01 5 54771192 54771192 A C PPAP2A Intron 0.22 TCGA-A1-A0SO-01 5 70754490 70754490 A C BDP1 Silent p.S99S 0.07 TCGA-A1-A0SO-01 5 78181641 78181641 C T ARSB Missense_Mutation p.G303E 0.11 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 5 89815236 89815236 G C LYSMD3 Missense_Mutation p.I107M 0.88 deleterious(0) possibly_damaging(0.819) TCGA-A1-A0SO-01 6 101847196 101847196 C T GRIK2 Missense_Mutation p.R15C 0.03 tolerated(0.22) benign(0) TCGA-A1-A0SO-01 6 116599945 116599945 G C TSPYL1 Missense_Mutation p.S350C 0.30 tolerated(0.06) possibly_damaging(0.534) TCGA-A1-A0SO-01 6 135375981 135375981 C G HBS1L 5'UTR 0.50 TCGA-A1-A0SO-01 6 13632730 13632730 G A RANBP9 Missense_Mutation p.R607C 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-A1-A0SO-01 6 148861581 148861581 A T SASH1 Missense_Mutation p.N700Y 0.10 deleterious(0) possibly_damaging(0.885) TCGA-A1-A0SO-01 6 159190927 159190927 C A EZR Missense_Mutation p.K380N 0.15 deleterious(0.04) benign(0.05) TCGA-A1-A0SO-01 6 166571853 166571853 G C T Missense_Mutation p.Q420E 0.83 tolerated(0.14) benign(0.071) TCGA-A1-A0SO-01 6 24547477 24547477 C A KIAA0319 Missense_Mutation p.K1045N 0.10 tolerated(0.05) benign(0.196) TCGA-A1-A0SO-01 6 24847834 24847834 C T FAM65B Missense_Mutation p.R388H 0.05 tolerated(0.1) benign(0.048) TCGA-A1-A0SO-01 6 26466201 26466201 C G BTN2A1 Missense_Mutation p.R319G 0.07 tolerated(0.09) benign(0.025) TCGA-A1-A0SO-01 6 2896403 2896403 C T SERPINB9 Missense_Mutation p.E64K 0.07 tolerated(0.42) benign(0.008) TCGA-A1-A0SO-01 6 29323322 29323322 G C OR5V1 Silent p.S217S 0.18 TCGA-A1-A0SO-01 6 30916555 30916555 C G DPCR1 Missense_Mutation p.T105S 0.36 tolerated_low_confidence(0.14) benign(0.303) TCGA-A1-A0SO-01 6 38142776 38142776 G T BTBD9 Missense_Mutation p.N608K 0.27 tolerated_low_confidence(1) benign(0.403) TCGA-A1-A0SO-01 6 41552561 41552561 C T FOXP4 Nonsense_Mutation p.Q119* 0.09 TCGA-A1-A0SO-01 6 42974675 42974675 C T PPP2R5D Silent p.L117L 0.11 TCGA-A1-A0SO-01 6 44223091 44223091 G C SLC35B2 Silent p.A217A 0.12 TCGA-A1-A0SO-01 6 47641223 47641223 A G GPR111 Intron 0.06 TCGA-A1-A0SO-01 6 55216353 55216353 C T GFRAL Missense_Mutation p.R225C 0.08 deleterious(0) possibly_damaging(0.67) TCGA-A1-A0SO-01 6 56032941 56032941 C G COL21A1 Missense_Mutation p.G394A 0.06 tolerated(0.17) benign(0.056) TCGA-A1-A0SO-01 6 76023340 76023340 G T FILIP1 Missense_Mutation p.N736K 0.20 tolerated(0.48) possibly_damaging(0.907) TCGA-A1-A0SO-01 6 83857006 83857006 C T DOPEY1 Nonsense_Mutation p.Q1910* 0.07 TCGA-A1-A0SO-01 6 8417178 8417178 A G SLC35B3 Silent p.Y308Y 0.15 TCGA-A1-A0SO-01 6 99729123 99729123 G T FAXC Missense_Mutation p.P383T 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.74) TCGA-A1-A0SO-01 7 100210890 100210890 C T MOSPD3 Silent p.D93D 0.14 TCGA-A1-A0SO-01 7 120764466 120764466 C T CPED1 Silent p.L334L 0.05 TCGA-A1-A0SO-01 7 135380202 135380202 G T SLC13A4 Silent p.G310G 0.13 TCGA-A1-A0SO-01 7 137339506 137339506 C A DGKI Missense_Mutation p.R237L 0.21 deleterious(0) probably_damaging(0.946) TCGA-A1-A0SO-01 7 139661880 139661880 G C TBXAS1 Missense_Mutation p.V375L 0.14 tolerated(0.2) benign(0.004) TCGA-A1-A0SO-01 7 143013381 143013381 C A CLCN1 Missense_Mutation p.P26T 0.29 tolerated_low_confidence(0.54) benign(0.075) TCGA-A1-A0SO-01 7 144101772 144101772 C T NOBOX Silent p.G29G 0.43 TCGA-A1-A0SO-01 7 149425677 149425677 C T KRBA1 Missense_Mutation p.P513L 0.44 tolerated(0.08) probably_damaging(0.991) TCGA-A1-A0SO-01 7 149477134 149477134 G T SSPO RNA 0.39 TCGA-A1-A0SO-01 7 154862919 154862919 G T HTR5A-AS1 Missense_Mutation p.P32Q 0.12 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-A1-A0SO-01 7 155499624 155499624 C A RBM33 Silent p.R270R 0.10 TCGA-A1-A0SO-01 7 156468401 156468401 C T RNF32 Silent p.I232I 0.09 TCGA-A1-A0SO-01 7 2740317 2740317 C T AMZ1 Nonsense_Mutation p.Q78* 0.65 TCGA-A1-A0SO-01 7 28997619 28997619 C T AC005013.5 Intron 0.38 TCGA-A1-A0SO-01 7 35242302 35242302 G T TBX20 Missense_Mutation p.P362T 0.18 deleterious_low_confidence(0.02) benign(0.168) TCGA-A1-A0SO-01 7 43918056 43918056 T A URGCP Missense_Mutation p.N336Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-A1-A0SO-01 7 44116187 44116187 G C POLM Missense_Mutation p.D252E 0.09 tolerated(0.72) possibly_damaging(0.527) TCGA-A1-A0SO-01 7 45662233 45662233 T G ADCY1 Missense_Mutation p.I304S 0.14 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 7 47852796 47852796 C T PKD1L1 Silent p.E2423E 0.09 TCGA-A1-A0SO-01 7 50135752 50135776 TTGAGAATATAGATTACCCACACTA - C7orf72 Frame_Shift_Del p.E25Vfs*4 0.18 TCGA-A1-A0SO-01 7 50450307 50450307 T A IKZF1 Missense_Mutation p.I164N 0.09 deleterious(0) probably_damaging(0.995) TCGA-A1-A0SO-01 7 81643739 81643739 C A CACNA2D1 Missense_Mutation p.Q400H 0.14 deleterious(0.01) possibly_damaging(0.86) TCGA-A1-A0SO-01 7 86468211 86468211 G C GRM3 Missense_Mutation p.D461H 0.33 deleterious(0) probably_damaging(1) TCGA-A1-A0SO-01 7 89789083 89789083 C T STEAP1 5'UTR 0.91 TCGA-A1-A0SO-01 7 99811670 99811670 C G STAG3 3'UTR 0.17 TCGA-A1-A0SO-01 8 119938847 119938847 C A TNFRSF11B Nonsense_Mutation p.E235* 0.23 TCGA-A1-A0SO-01 8 145623208 145623208 G T CPSF1 Silent p.R678R 0.67 TCGA-A1-A0SO-01 8 16850444 16850444 T C FGF20 3'UTR 0.46 TCGA-A1-A0SO-01 8 36671892 36671892 T C KCNU1 Silent p.S300S 0.88 TCGA-A1-A0SO-01 8 41580687 41580687 C G ANK1 Missense_Mutation p.E322Q 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-A1-A0SO-01 8 42177138 42177138 G A IKBKB Missense_Mutation p.E518K 0.25 deleterious(0.02) possibly_damaging(0.505) TCGA-A1-A0SO-01 8 56863331 56863331 G A LYN Missense_Mutation p.E159K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-A1-A0SO-01 8 67546988 67546988 C A VCPIP1 Missense_Mutation p.R1139S 0.06 deleterious_low_confidence(0.01) benign(0.004) TCGA-A1-A0SO-01 8 77618141 77618141 C A ZFHX4 Missense_Mutation p.D606E 0.10 possibly_damaging(0.753) TCGA-A1-A0SO-01 8 82392681 82392681 C A FABP4 Missense_Mutation p.A76S 0.08 deleterious(0.02) benign(0.05) TCGA-A1-A0SO-01 8 86351949 86351949 C A CA3 Missense_Mutation p.H15N 0.09 tolerated(0.07) benign(0.382) TCGA-A1-A0SO-01 9 127620210 127620210 G C RPL35 Missense_Mutation p.A120G 0.15 deleterious(0) benign(0.299) TCGA-A1-A0SO-01 9 133355834 133355834 G C ASS1 Missense_Mutation p.R279P 0.31 deleterious(0) probably_damaging(0.998) TCGA-A1-A0SO-01 9 96425216 96425216 A - PHF2 Frame_Shift_Del p.N576Tfs*39 0.28 TCGA-A1-A0SO-01 X 136652257 136652257 G T ZIC3 3'UTR 0.12 TCGA-A1-A0SO-01 X 148568462 148568462 C T IDS Missense_Mutation p.E181K 0.31 tolerated(0.79) benign(0.004) TCGA-A1-A0SO-01 X 152830499 152830499 G C ATP2B3 Missense_Mutation p.E1094Q 0.27 deleterious(0.05) possibly_damaging(0.888) TCGA-A1-A0SO-01 X 153135000 153135000 C A L1CAM Silent p.L414L 0.09 TCGA-A1-A0SO-01 X 155003798 155003798 T A SPRY3 Missense_Mutation p.S89T 0.04 tolerated(0.05) probably_damaging(0.999) TCGA-A1-A0SO-01 X 2861123 2861123 C G ARSE Missense_Mutation p.W370S 0.11 tolerated(0.34) benign(0.21) TCGA-A1-A0SO-01 X 49066136 49066136 C A CACNA1F Missense_Mutation p.G1603W 0.16 deleterious(0) probably_damaging(0.961) TCGA-A1-A0SO-01 X 49173663 49173663 G T GAGE10 Missense_Mutation p.S75I 0.12 tolerated(0.06) probably_damaging(0.987) TCGA-A1-A0SO-01 X 53631648 53631648 C T HUWE1 Missense_Mutation p.D882N 0.08 benign(0.147) TCGA-A1-A0SO-01 X 62857895 62857895 C T ARHGEF9 3'UTR 0.19 TCGA-A1-A0SO-01 X 64734836 64734836 T G LAS1L Missense_Mutation p.T649P 0.36 tolerated(0.24) benign(0.212) TCGA-A1-A0SO-01 X 66942814 66942814 C A AR Missense_Mutation p.D865E 0.11 deleterious(0) probably_damaging(0.941) TCGA-A1-A0SP-01 10 102035210 102035211 - TC BLOC1S2 3'UTR 0.28 TCGA-A1-A0SP-01 10 102747043 102747043 C A MRPL43 Intron 0.37 TCGA-A1-A0SP-01 10 95394645 95394645 A C PDE6C Missense_Mutation p.H417P 0.13 tolerated(0.18) benign(0.319) TCGA-A1-A0SP-01 10 97371060 97371060 A G ALDH18A1 Missense_Mutation p.I688T 0.43 deleterious(0) probably_damaging(1) TCGA-A1-A0SP-01 11 119028976 119028976 C T ABCG4 Silent p.A367A 0.51 TCGA-A1-A0SP-01 11 121031032 121031032 C T TECTA Silent p.N1626N 0.40 TCGA-A1-A0SP-01 11 62415535 62415535 G A INTS5 Missense_Mutation p.L673F 0.07 deleterious(0.02) probably_damaging(0.965) TCGA-A1-A0SP-01 11 64668490 64668490 C T ATG2A Silent p.R1398R 0.16 TCGA-A1-A0SP-01 11 64756807 64756807 G A BATF2 Nonsense_Mutation p.Q207* 0.19 TCGA-A1-A0SP-01 11 73020359 73020359 G T ARHGEF17 Missense_Mutation p.G226W 0.19 tolerated_low_confidence(0.13) benign(0.015) TCGA-A1-A0SP-01 12 3000069 3000069 G C TULP3 5'Flank 0.04 TCGA-A1-A0SP-01 12 30848616 30848616 G C IPO8 5'UTR 0.06 TCGA-A1-A0SP-01 12 83324216 83324216 G A TMTC2 Missense_Mutation p.G497D 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-A1-A0SP-01 13 61985500 61985500 A T PCDH20 Missense_Mutation p.I911N 0.10 deleterious(0) probably_damaging(0.931) TCGA-A1-A0SP-01 14 52978095 52978095 C A TXNDC16 Nonsense_Mutation p.E207* 0.47 TCGA-A1-A0SP-01 15 22947066 22947066 G A CYFIP1 Missense_Mutation p.E447K 0.29 deleterious(0) probably_damaging(0.966) TCGA-A1-A0SP-01 15 90784940 90784940 A G GDPGP1 Missense_Mutation p.E267G 0.10 tolerated(0.11) benign(0.031) TCGA-A1-A0SP-01 16 19049295 19049295 G A TMC7 Missense_Mutation p.V369I 0.04 tolerated(0.05) possibly_damaging(0.598) TCGA-A1-A0SP-01 16 84270972 84270972 G A KCNG4 Silent p.Y40Y 0.29 TCGA-A1-A0SP-01 16 87921784 87921784 C T CA5A Missense_Mutation p.R290Q 0.09 deleterious(0) probably_damaging(0.995) TCGA-A1-A0SP-01 17 25746626 25746626 A G TBC1D3P5 RNA 0.50 TCGA-A1-A0SP-01 17 42477336 42477336 C T GPATCH8 Silent p.E703E 0.48 TCGA-A1-A0SP-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.49 TCGA-A1-A0SP-01 17 76433854 76433854 C T DNAH17 Missense_Mutation p.A3962T 0.32 probably_damaging(0.922) TCGA-A1-A0SP-01 19 34263784 34263784 C T CHST8 Missense_Mutation p.A364V 0.07 tolerated(0.09) probably_damaging(0.99) TCGA-A1-A0SP-01 19 42599447 42599447 G T POU2F2 Missense_Mutation p.S374R 0.28 deleterious(0) possibly_damaging(0.899) TCGA-A1-A0SP-01 19 49216995 49216995 C T MAMSTR Silent p.L314L 0.04 TCGA-A1-A0SP-01 19 50208533 50208533 G A CPT1C Silent p.T314T 0.06 TCGA-A1-A0SP-01 19 51022151 51022151 G T LRRC4B Missense_Mutation p.F273L 0.31 deleterious(0.03) probably_damaging(0.926) TCGA-A1-A0SP-01 19 54183255 54183255 T A MIR519E RNA 0.03 TCGA-A1-A0SP-01 19 57956358 57956358 C T ZNF749 Silent p.C614C 0.21 TCGA-A1-A0SP-01 19 580426 580426 C T BSG Missense_Mutation p.P207L 0.24 tolerated(0.47) probably_damaging(0.962) TCGA-A1-A0SP-01 19 59073416 59073416 G A MZF1 3'UTR 0.05 TCGA-A1-A0SP-01 19 7964095 7964095 C T LRRC8E Nonsense_Mutation p.Q230* 0.07 TCGA-A1-A0SP-01 1 145440077 145440077 A G TXNIP Missense_Mutation p.M171V 0.26 tolerated(0.05) benign(0.02) TCGA-A1-A0SP-01 1 151259248 151259248 G A ZNF687 Missense_Mutation p.D161N 0.43 deleterious(0.02) benign(0.358) TCGA-A1-A0SP-01 1 181765841 181765841 G A CACNA1E Silent p.E2082E 0.04 TCGA-A1-A0SP-01 1 197056085 197056085 G - ASPM Frame_Shift_Del p.V3395Lfs*18 0.17 TCGA-A1-A0SP-01 1 203798941 203798941 C T ZC3H11A Missense_Mutation p.T179I 0.22 deleterious(0.04) benign(0.273) TCGA-A1-A0SP-01 1 215753269 215753269 C G KCTD3 Missense_Mutation p.R185G 0.37 tolerated(0.55) benign(0.212) TCGA-A1-A0SP-01 1 27106816 27106816 C T ARID1A Missense_Mutation p.R2143C 0.10 probably_damaging(0.996) TCGA-A1-A0SP-01 1 32937081 32937081 C T ZBTB8B Missense_Mutation p.R286C 0.38 deleterious(0.02) benign(0.009) TCGA-A1-A0SP-01 1 40776919 40776919 C A COL9A2 Missense_Mutation p.G187W 0.04 deleterious(0) probably_damaging(0.991) TCGA-A1-A0SP-01 1 54417750 54417750 G T LRRC42 Missense_Mutation p.M26I 0.05 tolerated(0.48) benign(0.019) TCGA-A1-A0SP-01 1 65300226 65300229 TAAA GG JAK1 3'UTR 0.40 TCGA-A1-A0SP-01 20 2944935 2944935 G T PTPRA Missense_Mutation p.W4C 0.07 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-A1-A0SP-01 20 62045493 62045493 A G KCNQ2 Missense_Mutation p.F527L 0.28 tolerated(0.35) probably_damaging(0.987) TCGA-A1-A0SP-01 21 45092232 45092232 A G RRP1B Missense_Mutation p.N86S 0.05 tolerated(0.09) benign(0.207) TCGA-A1-A0SP-01 22 21354432 21354432 C T THAP7 Missense_Mutation p.G223R 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-A1-A0SP-01 22 50960460 50960460 C T NCAPH2 Missense_Mutation p.S385F 0.03 deleterious(0) possibly_damaging(0.908) TCGA-A1-A0SP-01 22 51133438 51133438 T G SHANK3 Missense_Mutation p.S422R 0.11 benign(0.002) TCGA-A1-A0SP-01 2 162757469 162757469 G A SLC4A10 Missense_Mutation p.E464K 0.18 tolerated(0.07) benign(0.146) TCGA-A1-A0SP-01 2 232653392 232653392 C T COPS7B Missense_Mutation p.P38S 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-A1-A0SP-01 2 90248961 90248961 G A IGKV1D-43 Silent p.L14L 0.09 TCGA-A1-A0SP-01 4 110789053 110789053 C A LRIT3 Silent p.T282T 0.41 TCGA-A1-A0SP-01 4 153253808 153253808 G - FBXW7 Frame_Shift_Del p.R309Afs*33 0.25 TCGA-A1-A0SP-01 4 164507069 164507069 G A MARCH1 Silent p.C85C 0.26 TCGA-A1-A0SP-01 4 56428652 56428652 T - PDCL2 Frame_Shift_Del p.I164Ffs*9 0.10 TCGA-A1-A0SP-01 5 147024451 147024451 C T JAKMIP2 Missense_Mutation p.E349K 0.06 tolerated(0.08) benign(0.046) TCGA-A1-A0SP-01 5 43292640 43292640 G C HMGCS1 Missense_Mutation p.P470R 0.05 deleterious(0) probably_damaging(0.939) TCGA-A1-A0SP-01 5 6739844 6739844 G A PAPD7 Splice_Site p.X46_splice 0.08 TCGA-A1-A0SP-01 5 79375018 79375018 G A THBS4 Silent p.T816T 0.49 TCGA-A1-A0SP-01 6 27114460 27114460 C T HIST1H2BK Missense_Mutation p.V40I 0.12 tolerated_low_confidence(1) benign(0.106) TCGA-A1-A0SP-01 6 97634387 97634387 G A MMS22L Missense_Mutation p.A740V 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-A1-A0SP-01 7 113517724 113517724 C G PPP1R3A 3'UTR 0.30 TCGA-A1-A0SP-01 7 4185495 4185495 G A SDK1 Missense_Mutation p.R1457K 0.16 deleterious(0.04) benign(0.364) TCGA-A1-A0SP-01 8 127569710 127569710 C G FAM84B 5'UTR 0.23 TCGA-A1-A0SP-01 8 133935716 133935716 G T TG Missense_Mutation p.W1554C 0.04 deleterious(0.01) benign(0.232) TCGA-A1-A0SP-01 8 144947299 144947299 C T EPPK1 Silent p.R41R 0.19 TCGA-A1-A0SP-01 9 113170187 113170187 C G SVEP1 Missense_Mutation p.G2565R 0.30 probably_damaging(1) TCGA-A1-A0SP-01 X 110970225 110970225 G A ALG13 Missense_Mutation p.E640K 0.30 tolerated(0.11) possibly_damaging(0.505) TCGA-A1-A0SP-01 X 32503135 32503135 G A DMD Nonsense_Mutation p.Q902* 0.05 TCGA-A1-A0SP-01 X 41022114 41022114 C T USP9X Missense_Mutation p.R657W 0.06 deleterious(0) benign(0.043) TCGA-A1-A0SP-01 X 591742 591742 A C SHOX Missense_Mutation p.E37A 0.08 deleterious_low_confidence(0.02) benign(0.038) TCGA-A1-A0SP-01 X 70462188 70462188 G C ZMYM3 Missense_Mutation p.L1212V 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-A2-A04N-01 10 127527669 127527669 A G DHX32 Silent p.I594I 0.11 TCGA-A2-A04N-01 10 26409687 26409687 A G MYO3A Missense_Mutation p.Q620R 0.25 deleterious(0.04) possibly_damaging(0.532) TCGA-A2-A04N-01 11 126294697 126294697 C T KIRREL3 Silent p.E705E 0.11 TCGA-A2-A04N-01 11 64974107 64974107 C T CAPN1 Silent p.F509F 0.09 TCGA-A2-A04N-01 11 67161199 67161199 T A RAD9A Nonsense_Mutation p.C129* 0.28 TCGA-A2-A04N-01 12 117178862 117178862 C T RNFT2 Missense_Mutation p.R16C 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A2-A04N-01 12 47186864 47186864 C T SLC38A4 5'UTR 0.19 TCGA-A2-A04N-01 14 20528495 20528495 G A OR4L1 Missense_Mutation p.V98M 0.18 tolerated(1) benign(0) TCGA-A2-A04N-01 14 23609769 23609769 G A SLC7A8 Silent p.L233L 0.21 TCGA-A2-A04N-01 14 74824516 74824516 C T VRTN Missense_Mutation p.R344C 0.28 deleterious(0) probably_damaging(0.998) TCGA-A2-A04N-01 14 89172755 89172755 T A EML5 Missense_Mutation p.K558I 0.19 deleterious(0) probably_damaging(0.97) TCGA-A2-A04N-01 15 35207365 35207365 G A AQR Missense_Mutation p.P453L 0.09 deleterious(0) probably_damaging(0.985) TCGA-A2-A04N-01 15 57554331 57554331 A C TCF12 Missense_Mutation p.N503H 0.22 tolerated(0.15) possibly_damaging(0.851) TCGA-A2-A04N-01 15 79586096 79586096 C T ANKRD34C Missense_Mutation p.S157L 0.14 tolerated(0.06) probably_damaging(0.984) TCGA-A2-A04N-01 17 26369755 26369755 A G NLK 5'UTR 0.07 TCGA-A2-A04N-01 17 33496946 33496946 C T UNC45B Missense_Mutation p.R515C 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-A2-A04N-01 17 4496467 4496467 G T SMTNL2 Splice_Site p.X244_splice 0.35 TCGA-A2-A04N-01 17 57334498 57334498 G A GDPD1 Missense_Mutation p.G128E 0.20 deleterious(0.02) benign(0.096) TCGA-A2-A04N-01 18 39613908 39613908 C A PIK3C3 Missense_Mutation p.A609D 0.20 deleterious(0) probably_damaging(0.918) TCGA-A2-A04N-01 18 47402068 47402068 T G MYO5B Missense_Mutation p.K1176Q 0.16 tolerated(0.16) benign(0.005) TCGA-A2-A04N-01 18 7046346 7046346 G A LAMA1 Silent p.D263D 0.17 TCGA-A2-A04N-01 19 12734520 12734520 G T ZNF791 Missense_Mutation p.V4L 0.22 tolerated(0.11) benign(0.058) TCGA-A2-A04N-01 19 15918231 15918231 G A OR10H1 Missense_Mutation p.T206M 0.18 tolerated(0.25) benign(0.034) TCGA-A2-A04N-01 19 37129666 37129666 G A ZNF461 Silent p.C527C 0.16 TCGA-A2-A04N-01 19 50399425 50399425 G A IL4I1 Intron 0.24 TCGA-A2-A04N-01 19 9088087 9088087 G T MUC16 Missense_Mutation p.P1243H 0.11 unknown(0) TCGA-A2-A04N-01 1 155204639 155204639 G A GBA 3'UTR 0.17 TCGA-A2-A04N-01 1 207498015 207498015 A - CD55 Frame_Shift_Del p.Y133Sfs*11 0.15 TCGA-A2-A04N-01 1 211529725 211529725 G A TRAF5 Missense_Mutation p.C98Y 0.10 deleterious(0) probably_damaging(0.986) TCGA-A2-A04N-01 20 16474996 16474996 C A KIF16B Splice_Site p.X415_splice 0.14 TCGA-A2-A04N-01 20 31021535 31021535 C T ASXL1 Nonsense_Mutation p.Q512* 0.15 TCGA-A2-A04N-01 20 42697311 42697311 G A TOX2 Silent p.S502S 0.22 TCGA-A2-A04N-01 20 55967757 55967757 G A RBM38 Silent p.P95P 0.25 TCGA-A2-A04N-01 21 47821574 47821574 C T PCNT Missense_Mutation p.P1634L 0.16 possibly_damaging(0.908) TCGA-A2-A04N-01 2 166201098 166201098 A C SCN2A Missense_Mutation p.T866P 0.19 deleterious(0) possibly_damaging(0.907) TCGA-A2-A04N-01 2 179640414 179640414 G T TTN Silent p.I2059I 0.14 TCGA-A2-A04N-01 2 211018779 211018779 C T KANSL1L Silent p.E176E 0.13 TCGA-A2-A04N-01 2 219688550 219688550 A G PRKAG3 Missense_Mutation p.S469P 0.14 deleterious(0) probably_damaging(1) TCGA-A2-A04N-01 2 79314722 79314722 G A REG1B Missense_Mutation p.S6L 0.19 tolerated(0.45) benign(0) TCGA-A2-A04N-01 3 130292858 130292858 G T COL6A6 Missense_Mutation p.Q1012H 0.19 tolerated(0.42) benign(0) TCGA-A2-A04N-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.33 deleterious(0.04) probably_damaging(0.96) TCGA-A2-A04N-01 3 185906056 185906056 C T DGKG Missense_Mutation p.R677Q 0.05 tolerated(0.17) probably_damaging(0.999) TCGA-A2-A04N-01 3 47555027 47555027 C A ELP6 Missense_Mutation p.Q18H 0.27 deleterious(0.01) possibly_damaging(0.841) TCGA-A2-A04N-01 4 129886386 129886386 T A SCLT1 Missense_Mutation p.I289L 0.13 deleterious(0.02) benign(0.007) TCGA-A2-A04N-01 4 89649699 89649699 A G FAM13A Silent p.D1019D 0.23 TCGA-A2-A04N-01 5 56168534 56168534 C - MAP3K1 Frame_Shift_Del p.S497Ffs*60 0.21 TCGA-A2-A04N-01 5 56181812 56181814 GTT - MAP3K1 In_Frame_Del p.V1346del 0.15 TCGA-A2-A04N-01 5 56183211 56183211 A G MAP3K1 Missense_Mutation p.N1374S 0.15 deleterious(0) probably_damaging(0.999) TCGA-A2-A04N-01 5 56184105 56184105 G T MAP3K1 Missense_Mutation p.C1437F 0.16 deleterious(0) probably_damaging(0.999) TCGA-A2-A04N-01 6 28365880 28365880 C G ZSCAN12 Missense_Mutation p.E101D 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-A2-A04N-01 7 29535591 29535591 C A CHN2 Missense_Mutation p.H226Q 0.16 tolerated(0.11) probably_damaging(0.998) TCGA-A2-A04N-01 8 133894761 133894761 C T TG Silent p.L265L 0.09 TCGA-A2-A04N-01 8 143356158 143356158 C T TSNARE1 Missense_Mutation p.G477E 0.33 tolerated(0.22) possibly_damaging(0.902) TCGA-A2-A04N-01 9 125281810 125281810 C T OR1J4 Missense_Mutation p.R131C 0.14 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-A2-A04N-01 9 36087863 36087864 TG - RECK Frame_Shift_Del p.V271Sfs*18 0.09 TCGA-A2-A04N-01 X 129055393 129055393 C T UTP14A Missense_Mutation p.P393L 0.08 tolerated(0.13) benign(0.12) TCGA-A2-A04N-01 X 75004120 75004120 C G MAGEE2 Missense_Mutation p.R256T 0.16 deleterious(0) benign(0.355) TCGA-A2-A04R-01 10 124708257 124708257 G T C10orf88 Missense_Mutation p.L186I 0.45 deleterious(0) probably_damaging(0.996) TCGA-A2-A04R-01 10 135113545 135113545 T C TUBGCP2 Missense_Mutation p.T75A 0.37 tolerated(0.3) benign(0.002) TCGA-A2-A04R-01 10 14816305 14816305 C A FAM107B Missense_Mutation p.A120S 0.49 tolerated_low_confidence(0.11) benign(0.009) TCGA-A2-A04R-01 10 27454445 27454445 A T MASTL Missense_Mutation p.Y263F 0.49 tolerated(0.57) benign(0.271) TCGA-A2-A04R-01 10 75532267 75532267 C A AC022400.2 Missense_Mutation p.V38F 0.38 unknown(0) TCGA-A2-A04R-01 10 85993929 85993929 G A LRIT1 Silent p.S265S 0.36 TCGA-A2-A04R-01 11 108381259 108381259 A T EXPH5 Missense_Mutation p.L1659M 0.74 deleterious(0.04) probably_damaging(0.959) TCGA-A2-A04R-01 11 63585500 63585500 C G C11orf84 Silent p.T117T 0.06 TCGA-A2-A04R-01 11 66191919 66191919 C G NPAS4 Missense_Mutation p.P520A 0.41 tolerated_low_confidence(0.83) benign(0.048) TCGA-A2-A04R-01 12 25679085 25679085 T G IFLTD1 Missense_Mutation p.K249T 0.43 tolerated(0.19) benign(0.039) TCGA-A2-A04R-01 12 27127095 27127095 C A TM7SF3 Nonsense_Mutation p.E506* 0.44 TCGA-A2-A04R-01 12 49312242 49312242 T A CCDC65 Missense_Mutation p.I265K 0.41 deleterious(0) probably_damaging(0.953) TCGA-A2-A04R-01 12 52374976 52374976 C G ACVR1B Missense_Mutation p.D268E 0.44 deleterious(0) probably_damaging(0.999) TCGA-A2-A04R-01 12 53189537 53189537 A C KRT3 Missense_Mutation p.F97C 0.40 tolerated(0.14) unknown(0) TCGA-A2-A04R-01 12 66308671 66308671 T C HMGA2 Intron 0.29 TCGA-A2-A04R-01 13 101712242 101712242 C T NALCN Silent p.P1611P 0.45 TCGA-A2-A04R-01 13 108518417 108518417 C T FAM155A Silent p.A176A 0.45 TCGA-A2-A04R-01 14 103336784 103336784 G T TRAF3 Splice_Site p.X82_splice 0.41 TCGA-A2-A04R-01 14 20711110 20711110 G T OR11H4 Missense_Mutation p.A54S 0.52 tolerated(0.48) benign(0.091) TCGA-A2-A04R-01 14 22102870 22102870 C G OR10G2 Missense_Mutation p.Q43H 0.52 deleterious(0) probably_damaging(0.998) TCGA-A2-A04R-01 14 34269056 34269056 G A NPAS3 Missense_Mutation p.D515N 0.52 deleterious(0.01) benign(0.086) TCGA-A2-A04R-01 14 52186774 52186774 G T FRMD6 Missense_Mutation p.E342D 0.39 deleterious(0.05) benign(0.012) TCGA-A2-A04R-01 14 65398962 65398962 G A CHURC1 3'UTR 0.59 TCGA-A2-A04R-01 14 94510931 94510931 G C OTUB2 Splice_Site p.X102_splice 0.43 TCGA-A2-A04R-01 15 33359400 33359400 C T FMN1 Missense_Mutation p.R229H 0.48 tolerated_low_confidence(0.15) unknown(0) TCGA-A2-A04R-01 15 67479787 67479787 A C SMAD3 Missense_Mutation p.Q365P 0.09 deleterious(0.01) possibly_damaging(0.726) TCGA-A2-A04R-01 15 85325940 85325940 C A ZNF592 Missense_Mutation p.L12I 0.30 deleterious(0) probably_damaging(0.998) TCGA-A2-A04R-01 16 12798894 12798894 C T CPPED1 Missense_Mutation p.R101Q 0.24 deleterious(0.02) benign(0.089) TCGA-A2-A04R-01 17 36485058 36485058 C T GPR179 Nonsense_Mutation p.W1465* 0.42 TCGA-A2-A04R-01 17 56348081 56348081 C T MPO Missense_Mutation p.R725Q 0.43 tolerated(0.77) benign(0.002) TCGA-A2-A04R-01 17 7155785 7155785 C T ELP5 5'UTR 0.15 TCGA-A2-A04R-01 18 29211065 29211065 G A B4GALT6 Silent p.G211G 0.27 TCGA-A2-A04R-01 18 67721498 67721498 A G RTTN Missense_Mutation p.L1685P 0.38 deleterious(0) possibly_damaging(0.829) TCGA-A2-A04R-01 19 10097018 10097018 C A COL5A3 Missense_Mutation p.E775D 0.43 unknown(0) TCGA-A2-A04R-01 19 17330504 17330504 G A USE1 Missense_Mutation p.R221H 0.37 deleterious(0) probably_damaging(0.998) TCGA-A2-A04R-01 19 18897405 18897405 G A COMP Silent p.D397D 0.38 TCGA-A2-A04R-01 19 30054804 30054804 C A VSTM2B Missense_Mutation p.A274D 0.47 tolerated(0.06) benign(0.184) TCGA-A2-A04R-01 19 38055665 38055665 C A ZNF571 Missense_Mutation p.E555D 0.50 deleterious(0.02) benign(0.077) TCGA-A2-A04R-01 19 42861080 42861080 A T MEGF8 Missense_Mutation p.T1526S 0.50 tolerated(0.67) benign(0.009) TCGA-A2-A04R-01 19 44933974 44933974 G A ZNF229 Missense_Mutation p.R328W 0.41 tolerated(0.06) benign(0.001) TCGA-A2-A04R-01 19 52004714 52004714 G T SIGLEC12 Silent p.R92R 0.48 TCGA-A2-A04R-01 19 6586236 6586236 G T CD70 Missense_Mutation p.T126N 0.49 deleterious(0) benign(0.078) TCGA-A2-A04R-01 19 8171110 8171110 G C FBN3 Missense_Mutation p.D1565E 0.46 deleterious(0.02) possibly_damaging(0.612) TCGA-A2-A04R-01 19 9768710 9768710 C G ZNF562 Missense_Mutation p.E72D 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A04R-01 1 149763245 149763245 G T FCGR1A 3'UTR 0.21 TCGA-A2-A04R-01 1 150484230 150484230 C A ECM1 Missense_Mutation p.L363M 0.24 deleterious(0.01) possibly_damaging(0.532) TCGA-A2-A04R-01 1 152671581 152671582 CC G LCE2A Frame_Shift_Del p.C68Wfs*2 0.58 TCGA-A2-A04R-01 1 207087273 207087328 GATGAAGTTGGTGGTGGATACCACGGTACCACATGTTCCAGATCCAGCCATCTCCC - FAIM3 Frame_Shift_Del p.R50Qfs*30 0.57 TCGA-A2-A04R-01 1 244218516 244218516 C T ZBTB18 Silent p.C480C 0.63 TCGA-A2-A04R-01 1 34068091 34068091 G T CSMD2 Missense_Mutation p.F2198L 0.67 deleterious(0.01) possibly_damaging(0.5) TCGA-A2-A04R-01 20 32267630 32267630 T C E2F1 Missense_Mutation p.Y168C 0.32 deleterious(0) probably_damaging(1) TCGA-A2-A04R-01 20 60770921 60770921 A C MTG2 Missense_Mutation p.S90R 0.35 tolerated(0.35) possibly_damaging(0.845) TCGA-A2-A04R-01 20 60868880 60868880 C A OSBPL2 Silent p.P460P 0.23 TCGA-A2-A04R-01 21 32253424 32253424 G C KRTAP11-1 Silent p.V140V 0.38 TCGA-A2-A04R-01 21 46888640 46888652 GGAGCCTGGCGCC - COL18A1 Frame_Shift_Del p.E378Gfs*18 0.70 TCGA-A2-A04R-01 22 17443599 17443599 C T GAB4 3'UTR 0.31 TCGA-A2-A04R-01 22 18562697 18562697 G A PEX26 Missense_Mutation p.M96I 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A04R-01 2 109100752 109100752 C G GCC2 Missense_Mutation p.L1200V 0.37 deleterious(0.02) probably_damaging(0.991) TCGA-A2-A04R-01 2 170177381 170177381 C T LRP2 Silent p.A31A 0.44 TCGA-A2-A04R-01 2 178080348 178080348 C T HNRNPA3 Nonsense_Mutation p.R52* 0.38 TCGA-A2-A04R-01 2 179457975 179457975 C A TTN Missense_Mutation p.V19654F 0.44 TCGA-A2-A04R-01 2 197143359 197143359 T C HECW2 Missense_Mutation p.T1010A 0.46 tolerated(1) benign(0.05) TCGA-A2-A04R-01 2 231860870 231860870 G A SPATA3 5'UTR 0.41 TCGA-A2-A04R-01 2 234746013 234746013 G A HJURP 3'UTR 0.35 TCGA-A2-A04R-01 3 121507139 121507139 G C IQCB1 Missense_Mutation p.Q424E 0.44 deleterious(0) benign(0.083) TCGA-A2-A04R-01 3 38991797 38991797 G T SCN11A Missense_Mutation p.F19L 0.45 deleterious(0.02) probably_damaging(0.997) TCGA-A2-A04R-01 3 53769505 53769505 T A CACNA1D Missense_Mutation p.I929N 0.61 deleterious(0) probably_damaging(0.998) TCGA-A2-A04R-01 3 54676226 54676226 C T CACNA2D3 Silent p.T375T 0.54 TCGA-A2-A04R-01 3 57456362 57456362 T A snoU13 5'Flank 0.42 TCGA-A2-A04R-01 3 9831629 9831629 C A TADA3 Missense_Mutation p.D76Y 0.54 deleterious(0) probably_damaging(0.98) TCGA-A2-A04R-01 4 1235268 1235288 CGCGGCAATCACTGAAGCCTG - CTBP1 Intron 0.57 TCGA-A2-A04R-01 4 183594306 183594306 C A TENM3 Silent p.I420I 0.51 TCGA-A2-A04R-01 4 37962151 37962151 C T PTTG2 Silent p.I32I 0.82 TCGA-A2-A04R-01 4 53468079 53468079 A G USP46 Silent p.D288D 0.46 TCGA-A2-A04R-01 4 57888327 57888327 C T POLR2B Silent p.F810F 0.41 TCGA-A2-A04R-01 5 122522975 122522975 C T PRDM6 3'UTR 0.54 TCGA-A2-A04R-01 5 130785738 130785738 T G RAPGEF6 Missense_Mutation p.K1068Q 0.42 tolerated(0.21) probably_damaging(0.998) TCGA-A2-A04R-01 5 132200202 132200202 G A GDF9 Silent p.L8L 0.40 TCGA-A2-A04R-01 5 140391240 140391240 G T PCDHAC1 3'UTR 0.42 TCGA-A2-A04R-01 5 141694299 141694299 T A SPRY4 Silent p.S148S 0.57 TCGA-A2-A04R-01 5 153374519 153374519 G A FAM114A2 Missense_Mutation p.A448V 0.42 deleterious(0.01) possibly_damaging(0.517) TCGA-A2-A04R-01 5 176931757 176931757 A T DOK3 Missense_Mutation p.F267Y 0.38 tolerated(0.1) benign(0.209) TCGA-A2-A04R-01 6 27833360 27833360 G C HIST1H2AL Missense_Mutation p.K76N 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-A2-A04R-01 6 43578461 43578461 G T POLH Splice_Site p.X415_splice 0.29 TCGA-A2-A04R-01 7 119915612 119915612 G T KCND2 Missense_Mutation p.G309V 0.53 deleterious(0) probably_damaging(1) TCGA-A2-A04R-01 7 150325167 150325167 C G GIMAP6 Silent p.L173L 0.39 TCGA-A2-A04R-01 7 150325173 150325173 G T GIMAP6 Silent p.G171G 0.41 TCGA-A2-A04R-01 7 150698415 150698415 G A NOS3 Missense_Mutation p.D444N 0.55 deleterious(0) probably_damaging(0.999) TCGA-A2-A04R-01 7 86415883 86415883 G C GRM3 Missense_Mutation p.V259L 0.41 tolerated(0.1) benign(0.396) TCGA-A2-A04R-01 8 106813723 106813723 G T ZFPM2 Missense_Mutation p.K471N 0.62 deleterious(0) probably_damaging(0.997) TCGA-A2-A04R-01 8 11301703 11301703 T A FAM167A Missense_Mutation p.E73V 0.40 tolerated(0.18) benign(0.099) TCGA-A2-A04R-01 8 139255184 139255184 C A FAM135B Splice_Site p.X223_splice 0.19 TCGA-A2-A04R-01 8 145139730 145139730 C T GPAA1 Silent p.G372G 0.24 TCGA-A2-A04R-01 8 42033530 42033530 C G PLAT Missense_Mutation p.R557P 0.40 deleterious(0.04) benign(0.051) TCGA-A2-A04R-01 8 56686018 56686018 G T TGS1 5'UTR 0.33 TCGA-A2-A04R-01 9 127316626 127316626 C G NR6A1 Missense_Mutation p.Q122H 0.32 deleterious(0.02) probably_damaging(0.968) TCGA-A2-A04R-01 9 18817201 18817201 G C ADAMTSL1 Missense_Mutation p.Q1300H 0.36 tolerated(0.16) possibly_damaging(0.489) TCGA-A2-A04R-01 9 18817202 18817202 G T ADAMTSL1 Nonsense_Mutation p.G1301* 0.37 TCGA-A2-A04R-01 X 105184016 105184016 T A NRK Missense_Mutation p.F1318Y 0.54 tolerated(0.64) probably_damaging(0.979) TCGA-A2-A04R-01 X 105184017 105184017 C A NRK Missense_Mutation p.F1318L 0.53 deleterious(0) probably_damaging(0.979) TCGA-A2-A04R-01 X 152915602 152915602 T A DUSP9 Missense_Mutation p.F333I 0.46 deleterious(0) probably_damaging(0.999) TCGA-A2-A04R-01 X 23411288 23411288 C A PTCHD1 Missense_Mutation p.N551K 0.43 tolerated(0.08) benign(0.192) TCGA-A2-A04R-01 X 29935650 29935650 G T IL1RAPL1 Missense_Mutation p.W283L 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-A2-A04R-01 X 41413141 41413141 C G CASK Missense_Mutation p.D624H 0.36 deleterious(0) probably_damaging(0.981) TCGA-A2-A04R-01 X 49093725 49093786 TGCATGGTGAGTGGCCCTCCTCCTAATGCACACATCCTCTTTCTTCCTCTTTTACAAAGTAA CT CCDC22 Splice_Site p.X75_splice 0.35 TCGA-A2-A04R-01 X 68060252 68060252 C T EFNB1 Missense_Mutation p.R266C 0.42 deleterious(0) probably_damaging(0.997) TCGA-A2-A04R-01 X 69247730 69247730 C A EDA Missense_Mutation p.P184T 0.59 tolerated_low_confidence(0.14) unknown(0) TCGA-A2-A04U-01 10 27793265 27793265 C T RAB18 5'UTR 0.26 TCGA-A2-A04U-01 11 104905093 104905093 T C CASP1 Missense_Mutation p.E39G 0.34 deleterious(0.02) probably_damaging(0.981) TCGA-A2-A04U-01 11 118919513 118919513 C T HYOU1 Missense_Mutation p.R693Q 0.06 tolerated(0.7) benign(0) TCGA-A2-A04U-01 11 47753019 47753019 G C FNBP4 Missense_Mutation p.Q639E 0.19 tolerated(1) benign(0.021) TCGA-A2-A04U-01 11 48164559 48164559 C T PTPRJ Silent p.H844H 0.04 TCGA-A2-A04U-01 11 49831663 49831663 G A RP11-707M1.1 RNA 0.21 TCGA-A2-A04U-01 11 9074689 9074689 G A SCUBE2 Silent p.D468D 0.80 TCGA-A2-A04U-01 12 108145695 108145695 C G PRDM4 Missense_Mutation p.G208A 0.13 tolerated_low_confidence(0.61) benign(0.434) TCGA-A2-A04U-01 12 40422247 40422247 C G SLC2A13 Missense_Mutation p.E261Q 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A04U-01 14 62547769 62547769 C T SYT16 Missense_Mutation p.T404M 0.94 deleterious(0) probably_damaging(0.999) TCGA-A2-A04U-01 14 96730708 96730708 G A BDKRB1 Missense_Mutation p.R230Q 0.88 tolerated(0.15) benign(0.32) TCGA-A2-A04U-01 15 31229401 31229401 C - FAN1 Frame_Shift_Del p.A999Vfs*3 0.41 TCGA-A2-A04U-01 15 33261324 33261324 T C FMN1 Missense_Mutation p.M637V 0.66 tolerated(1) unknown(0) TCGA-A2-A04U-01 15 65490491 65490491 T A CILP Missense_Mutation p.E711D 0.85 deleterious(0.01) probably_damaging(0.986) TCGA-A2-A04U-01 15 93510696 93510696 A G CHD2 Silent p.E714E 0.69 TCGA-A2-A04U-01 16 48172233 48172233 T C ABCC12 Silent p.T295T 0.32 TCGA-A2-A04U-01 16 58564183 58564183 C T CNOT1 Silent p.V2082V 0.69 TCGA-A2-A04U-01 17 11461131 11461131 G A SHISA6 Missense_Mutation p.R389H 0.62 deleterious(0) probably_damaging(0.993) TCGA-A2-A04U-01 17 56403701 56403701 G A BZRAP1 Missense_Mutation p.R175C 0.85 deleterious(0) probably_damaging(1) TCGA-A2-A04U-01 17 7579365 7579367 CGT GC TP53 Frame_Shift_Del p.Y107Cfs*16 0.50 TCGA-A2-A04U-01 18 21530014 21530014 C T LAMA3 Missense_Mutation p.P3178L 0.16 benign(0.008) TCGA-A2-A04U-01 18 44560555 44560555 C T TCEB3B Missense_Mutation p.V361M 0.23 tolerated(0.16) benign(0.002) TCGA-A2-A04U-01 19 17688008 17688008 G C COLGALT1 Missense_Mutation p.K318N 0.07 tolerated(0.06) benign(0.003) TCGA-A2-A04U-01 19 50921181 50921181 C - POLD1 Frame_Shift_Del p.P1102Lfs*22 0.46 TCGA-A2-A04U-01 1 11217313 11217313 C T MTOR Silent p.E1455E 0.32 TCGA-A2-A04U-01 1 145075671 145075671 G C PDE4DIP Silent p.A64A 0.27 TCGA-A2-A04U-01 1 150601942 150601942 G T ENSA Missense_Mutation p.S2Y 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A2-A04U-01 1 200967640 200967640 A C KIF21B Missense_Mutation p.I650S 0.25 deleterious(0) probably_damaging(0.99) TCGA-A2-A04U-01 1 220970115 220970115 C G MARC1 Missense_Mutation p.Q194E 0.37 tolerated(1) benign(0.004) TCGA-A2-A04U-01 1 220970138 220970138 C A MARC1 Silent p.P201P 0.33 TCGA-A2-A04U-01 1 231406515 231406515 G A GNPAT Missense_Mutation p.A431T 0.21 tolerated(0.45) benign(0.025) TCGA-A2-A04U-01 1 245025803 245025803 T A HNRNPU Missense_Mutation p.E279D 0.19 tolerated(0.24) benign(0.217) TCGA-A2-A04U-01 1 47603123 47603123 G T CYP4A22 5'Flank 0.19 TCGA-A2-A04U-01 1 62914231 62914231 T A USP1 Missense_Mutation p.C506S 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A04U-01 1 75036904 75036904 A T C1orf173 Missense_Mutation p.L1497H 0.09 tolerated(0.11) benign(0.04) TCGA-A2-A04U-01 20 33148574 33148574 C T PIGU 3'UTR 0.18 TCGA-A2-A04U-01 21 28315764 28315764 T A ADAMTS5 Missense_Mutation p.D447V 0.21 deleterious(0) possibly_damaging(0.752) TCGA-A2-A04U-01 22 20127347 20127347 C T ZDHHC8 Silent p.V163V 0.23 TCGA-A2-A04U-01 22 40661106 40661106 A T TNRC6B Missense_Mutation p.D291V 0.33 deleterious(0.01) possibly_damaging(0.653) TCGA-A2-A04U-01 2 15372613 15372613 C A NBAS Missense_Mutation p.G2057W 0.23 deleterious(0.05) possibly_damaging(0.599) TCGA-A2-A04U-01 2 184022174 184022174 T G NUP35 Missense_Mutation p.F181C 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A04U-01 2 219894866 219894866 C A CCDC108 Missense_Mutation p.C409F 0.22 deleterious(0) probably_damaging(0.998) TCGA-A2-A04U-01 2 238727578 238727578 C G RBM44 Missense_Mutation p.T572R 0.11 tolerated(0.21) possibly_damaging(0.822) TCGA-A2-A04U-01 2 85361198 85361198 C G TCF7L1 Silent p.A103A 0.29 TCGA-A2-A04U-01 3 195513060 195513060 G A MUC4 Silent p.D1797D 0.19 TCGA-A2-A04U-01 4 110737351 110737351 T G GAR1 Missense_Mutation p.F11V 0.15 tolerated_low_confidence(0.27) unknown(0) TCGA-A2-A04U-01 4 113360909 113360909 A T ALPK1 Missense_Mutation p.K1140I 0.08 deleterious(0) probably_damaging(1) TCGA-A2-A04U-01 4 2321938 2321938 G A ZFYVE28 Silent p.S254S 0.73 TCGA-A2-A04U-01 5 140799111 140799111 T G PCDHGB7 Missense_Mutation p.V562G 1.00 deleterious(0) probably_damaging(0.983) TCGA-A2-A04U-01 6 90660232 90660232 G C BACH2 Missense_Mutation p.D531E 0.58 tolerated(0.1) probably_damaging(0.999) TCGA-A2-A04U-01 7 100841573 100841573 G C MOGAT3 Missense_Mutation p.I189M 0.24 deleterious(0) probably_damaging(0.995) TCGA-A2-A04U-01 7 154748957 154748957 G A PAXIP1 Silent p.V842V 0.12 TCGA-A2-A04U-01 7 55929654 55929654 T C SEPT14 Missense_Mutation p.I12M 0.85 tolerated(0.09) benign(0.115) TCGA-A2-A04U-01 7 87145943 87145943 C T ABCB1 Missense_Mutation p.G989E 0.30 deleterious(0) probably_damaging(0.999) TCGA-A2-A04U-01 7 90895264 90895264 T A FZD1 Missense_Mutation p.F357I 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-A2-A04U-01 7 99045885 99045885 A C CPSF4 Missense_Mutation p.Y99S 0.22 deleterious(0) possibly_damaging(0.542) TCGA-A2-A04U-01 8 56652672 56652672 T C TMEM68 3'UTR 0.09 TCGA-A2-A04U-01 9 125898790 125898790 C T STRBP Missense_Mutation p.R501K 0.20 tolerated(0.52) benign(0.015) TCGA-A2-A04U-01 9 129458599 129458599 G A LMX1B Missense_Mutation p.D364N 0.22 deleterious(0.04) possibly_damaging(0.671) TCGA-A2-A04U-01 9 140676797 140676797 T G EHMT1 Missense_Mutation p.L777R 0.46 deleterious(0) probably_damaging(1) TCGA-A2-A04U-01 9 2643403 2643403 G A VLDLR Missense_Mutation p.R231H 0.24 tolerated(0.14) benign(0.002) TCGA-A2-A04U-01 9 35732815 35732815 C A CREB3 Missense_Mutation p.L16M 0.57 deleterious(0) probably_damaging(0.999) TCGA-A2-A04U-01 9 37708487 37708487 C T FRMPD1 Silent p.V117V 0.31 TCGA-A2-A04U-01 X 114238570 114238570 A G IL13RA2 3'UTR 0.68 TCGA-A2-A04U-01 X 26213143 26213143 G C MAGEB6 Missense_Mutation p.A394P 0.39 deleterious(0) probably_damaging(0.995) TCGA-A2-A04U-01 X 3261749 3261749 C T MXRA5 Silent p.T42T 0.14 TCGA-A2-A04U-01 X 35984770 35984770 A T CXorf22 Missense_Mutation p.D500V 0.45 deleterious(0) possibly_damaging(0.754) TCGA-A2-A04U-01 X 46696420 46696420 C A RP2 5'UTR 0.35 TCGA-A2-A04U-01 X 48974106 48974106 G C GPKOW Missense_Mutation p.L209V 0.10 tolerated(0.51) benign(0.057) TCGA-A2-A04U-01 X 78426996 78426996 T A GPR174 Missense_Mutation p.N164K 0.43 tolerated(0.11) benign(0.243) TCGA-A2-A04W-01 10 104416924 104416924 C G TRIM8 Missense_Mutation p.S490C 0.14 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-A2-A04W-01 10 1046775 1046775 C G GTPBP4 Silent p.L271L 0.14 TCGA-A2-A04W-01 10 113941551 113941551 G C GPAM 5'UTR 0.25 TCGA-A2-A04W-01 10 15263046 15263046 C G FAM171A1 Missense_Mutation p.K256N 0.13 deleterious(0) possibly_damaging(0.627) TCGA-A2-A04W-01 10 28273951 28273951 G A ARMC4 Missense_Mutation p.S191L 0.14 deleterious(0) possibly_damaging(0.855) TCGA-A2-A04W-01 10 49634023 49634023 G A MAPK8 Missense_Mutation p.E261K 0.09 tolerated(0.28) possibly_damaging(0.454) TCGA-A2-A04W-01 10 50294067 50294067 G C VSTM4 Silent p.V153V 0.31 TCGA-A2-A04W-01 10 64573184 64573184 C T EGR2 Missense_Mutation p.R405Q 0.31 deleterious(0) possibly_damaging(0.857) TCGA-A2-A04W-01 10 99222427 99222427 G T MMS19 Nonsense_Mutation p.S642* 0.15 TCGA-A2-A04W-01 11 10527540 10527540 C G AMPD3 3'UTR 0.16 TCGA-A2-A04W-01 11 108047018 108047018 C T NPAT Missense_Mutation p.E363K 0.09 deleterious(0) possibly_damaging(0.765) TCGA-A2-A04W-01 11 123887198 123887198 C A OR10G4 Missense_Mutation p.A306E 0.13 tolerated(0.12) benign(0.028) TCGA-A2-A04W-01 11 5799262 5799262 G C OR52N5 Missense_Mutation p.I201M 0.23 deleterious(0) possibly_damaging(0.905) TCGA-A2-A04W-01 11 65374213 65374213 C T MAP3K11 Missense_Mutation p.E518K 0.07 tolerated(0.37) possibly_damaging(0.905) TCGA-A2-A04W-01 11 6806680 6806680 T G OR2AG1 Missense_Mutation p.S138A 0.10 tolerated(0.25) benign(0.012) TCGA-A2-A04W-01 11 76726161 76726161 G C ACER3 Missense_Mutation p.R200T 0.12 tolerated(0.08) probably_damaging(0.934) TCGA-A2-A04W-01 12 102040663 102040663 G C MYBPC1 Missense_Mutation p.R338T 0.20 deleterious(0) possibly_damaging(0.597) TCGA-A2-A04W-01 12 102158936 102158936 G A GNPTAB Nonsense_Mutation p.R587* 0.13 TCGA-A2-A04W-01 12 10962482 10962482 C T TAS2R9 Missense_Mutation p.D65N 0.13 tolerated(0.33) benign(0.053) TCGA-A2-A04W-01 12 111991992 111991992 C T ATXN2 Missense_Mutation p.M266I 0.16 benign(0.029) TCGA-A2-A04W-01 12 123795660 123795660 C G SBNO1 Silent p.L1079L 0.10 TCGA-A2-A04W-01 12 14805914 14805914 C T GUCY2C Missense_Mutation p.R502K 0.08 tolerated(0.3) benign(0.1) TCGA-A2-A04W-01 12 48723608 48723608 G A H1FNT Silent p.A178A 0.14 TCGA-A2-A04W-01 12 57115051 57115051 C G NACA Missense_Mutation p.G88A 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-A2-A04W-01 12 6688060 6688060 C A CHD4 Nonsense_Mutation p.E1645* 0.12 TCGA-A2-A04W-01 12 81013271 81013271 A G PTPRQ Missense_Mutation p.D1776G 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-A2-A04W-01 13 45540046 45540046 C G NUFIP1 Missense_Mutation p.E254Q 0.12 deleterious(0.04) probably_damaging(0.981) TCGA-A2-A04W-01 13 76430698 76430698 C T LMO7 Missense_Mutation p.S1340L 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.806) TCGA-A2-A04W-01 14 101531971 101531971 G A MIR369 RNA 0.18 TCGA-A2-A04W-01 14 106642024 106642024 C G IGHV1-18 5'UTR 0.10 TCGA-A2-A04W-01 14 56746496 56746496 G A PELI2 Splice_Site p.X103_splice 0.05 TCGA-A2-A04W-01 14 69520744 69520744 C T DCAF5 Missense_Mutation p.E887K 0.08 tolerated_low_confidence(0.06) benign(0.012) TCGA-A2-A04W-01 14 76241830 76241830 C T TTLL5 Silent p.L714L 0.12 TCGA-A2-A04W-01 14 76420764 76420764 C G TTLL5 Intron 0.12 TCGA-A2-A04W-01 14 92604662 92604662 G A CPSF2 Missense_Mutation p.R211K 0.06 tolerated(0.15) possibly_damaging(0.557) TCGA-A2-A04W-01 14 96129821 96129821 C G TCL6 RNA 0.19 TCGA-A2-A04W-01 15 34640323 34640323 C T NUTM1 Missense_Mutation p.P57L 0.15 deleterious(0.03) possibly_damaging(0.521) TCGA-A2-A04W-01 15 40914718 40914718 G A CASC5 Missense_Mutation p.M778I 0.32 tolerated(0.83) benign(0.002) TCGA-A2-A04W-01 15 73866131 73866131 G A NPTN Missense_Mutation p.P238S 0.10 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 16 19501758 19501759 CT - TMC5 Frame_Shift_Del p.F874Hfs*64 0.13 TCGA-A2-A04W-01 16 46991060 46991060 G A DNAJA2 Nonsense_Mutation p.Q374* 0.08 TCGA-A2-A04W-01 16 67241784 67241784 G C LRRC29 Silent p.L165L 0.25 TCGA-A2-A04W-01 16 67304649 67304649 G C SLC9A5 Missense_Mutation p.E743Q 0.10 tolerated(0.17) benign(0.143) TCGA-A2-A04W-01 16 67913012 67913012 C A EDC4 Silent p.A480A 0.18 TCGA-A2-A04W-01 16 89254650 89254650 G A CDH15 Missense_Mutation p.R312H 0.38 tolerated(0.09) benign(0.077) TCGA-A2-A04W-01 17 2583517 2583517 G C PAFAH1B1 Missense_Mutation p.L354F 0.08 tolerated(0.06) benign(0.077) TCGA-A2-A04W-01 17 27594549 27594549 C T NUFIP2 Splice_Site p.X668_splice 0.07 TCGA-A2-A04W-01 17 28296048 28296048 G C EFCAB5 Missense_Mutation p.E144Q 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-A2-A04W-01 17 3632789 3632789 G A ITGAE Silent p.F965F 0.09 TCGA-A2-A04W-01 17 37263689 37263689 C T PLXDC1 Missense_Mutation p.D228N 0.49 tolerated(0.2) possibly_damaging(0.489) TCGA-A2-A04W-01 17 4906086 4906086 C T KIF1C Silent p.I223I 0.16 TCGA-A2-A04W-01 17 5084581 5084581 G C ZNF594 3'UTR 0.10 TCGA-A2-A04W-01 17 7329825 7329825 G A C17orf74 Missense_Mutation p.R172Q 0.11 deleterious(0.03) benign(0.068) TCGA-A2-A04W-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.34 deleterious(0) probably_damaging(0.997) TCGA-A2-A04W-01 17 80767627 80767627 G A TBCD Missense_Mutation p.D398N 0.11 deleterious(0) possibly_damaging(0.786) TCGA-A2-A04W-01 18 21712496 21712496 C T TTC39C Silent p.I570I 0.12 TCGA-A2-A04W-01 18 24035810 24035810 C G KCTD1 Missense_Mutation p.G224A 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-A2-A04W-01 18 33077916 33077916 C T INO80C 5'Flank 0.32 TCGA-A2-A04W-01 18 44104553 44104553 C T LOXHD1 Silent p.G473G 0.16 TCGA-A2-A04W-01 18 74729082 74729082 G A MBP Silent p.L94L 0.10 TCGA-A2-A04W-01 18 756691 756691 G A YES1 Missense_Mutation p.S46L 0.15 tolerated(0.07) benign(0.03) TCGA-A2-A04W-01 19 19035754 19035754 C T DDX49 Silent p.I331I 0.31 TCGA-A2-A04W-01 19 45574867 45574867 C T ZNF296 Missense_Mutation p.E474K 0.25 tolerated_low_confidence(0.12) benign(0.001) TCGA-A2-A04W-01 19 51831946 51831946 C G IGLON5 Nonsense_Mutation p.S315* 0.13 TCGA-A2-A04W-01 19 53057385 53057385 A G ZNF808 Missense_Mutation p.K406E 0.18 deleterious(0.04) possibly_damaging(0.495) TCGA-A2-A04W-01 19 53086824 53086824 C G ZNF701 3'UTR 0.31 TCGA-A2-A04W-01 19 56423843 56423843 G C NLRP13 Nonsense_Mutation p.S447* 0.25 TCGA-A2-A04W-01 19 56424232 56424232 G C NLRP13 Missense_Mutation p.I317M 0.25 tolerated(0.12) benign(0.36) TCGA-A2-A04W-01 19 56918427 56918427 C G ZNF583 5'UTR 0.03 TCGA-A2-A04W-01 19 56953658 56953658 G A ZNF667 Nonsense_Mutation p.Q236* 0.12 TCGA-A2-A04W-01 19 57984669 57984669 C A ZNF772 Missense_Mutation p.W481C 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A04W-01 19 9070919 9070919 A C MUC16 Silent p.S5509S 0.09 TCGA-A2-A04W-01 1 155167681 155167681 G C THBS3 Silent p.G764G 0.14 TCGA-A2-A04W-01 1 179095520 179095520 C A ABL2 Missense_Mutation p.D227Y 0.14 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 1 182026114 182026114 G A ZNF648 Silent p.F344F 0.09 TCGA-A2-A04W-01 1 201182312 201182312 G A IGFN1 Missense_Mutation p.R2764Q 0.07 benign(0.045) TCGA-A2-A04W-01 1 207793269 207793269 G A CR1 Missense_Mutation p.E2371K 0.11 tolerated(0.45) benign(0.039) TCGA-A2-A04W-01 1 216246562 216246562 T C USH2A Missense_Mutation p.R1885G 0.14 possibly_damaging(0.77) TCGA-A2-A04W-01 1 216498908 216498908 G A USH2A Silent p.L294L 0.19 TCGA-A2-A04W-01 1 23519660 23519660 G C HTR1D Missense_Mutation p.I351M 0.10 deleterious(0) possibly_damaging(0.724) TCGA-A2-A04W-01 1 237897015 237897015 G A RYR2 Missense_Mutation p.E3684K 0.11 benign(0.138) TCGA-A2-A04W-01 1 244724033 244724033 C G C1orf101 Missense_Mutation p.L365V 0.07 tolerated(0.32) benign(0.108) TCGA-A2-A04W-01 1 29344900 29344900 C G EPB41 Missense_Mutation p.P357R 0.18 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 1 33238563 33238563 G A KIAA1522 3'UTR 0.16 TCGA-A2-A04W-01 1 33238565 33238565 G A KIAA1522 3'UTR 0.16 TCGA-A2-A04W-01 1 63113779 63113779 C A DOCK7 Nonsense_Mutation p.E244* 0.10 TCGA-A2-A04W-01 1 9305353 9305353 G A H6PD Silent p.L120L 0.10 TCGA-A2-A04W-01 1 99358642 99358642 C T LPPR5 Missense_Mutation p.A318T 0.21 tolerated(1) benign(0.075) TCGA-A2-A04W-01 20 168643 168643 C G DEFB128 Missense_Mutation p.D56H 0.13 tolerated(0.1) benign(0.077) TCGA-A2-A04W-01 20 62729457 62729457 C G OPRL1 Missense_Mutation p.S179C 0.14 deleterious(0.01) probably_damaging(1) TCGA-A2-A04W-01 21 11038968 11038968 C G BAGE2 RNA 0.04 TCGA-A2-A04W-01 21 19190578 19190578 C A C21orf91 Missense_Mutation p.V20F 0.11 deleterious(0) probably_damaging(0.938) TCGA-A2-A04W-01 21 33039646 33039646 C G SOD1 Missense_Mutation p.I105M 0.14 deleterious(0.02) probably_damaging(1) TCGA-A2-A04W-01 21 33765732 33765732 G C C21orf119 3'UTR 0.17 TCGA-A2-A04W-01 21 37759985 37759985 G A CHAF1B Silent p.V72V 0.03 TCGA-A2-A04W-01 22 30682032 30682032 G A GATSL3 Missense_Mutation p.R267C 0.08 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 22 35480375 35480375 G C ISX Splice_Site p.X128_splice 0.10 TCGA-A2-A04W-01 2 130738425 130738425 C T RAB6C Missense_Mutation p.S246L 0.09 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-A2-A04W-01 2 15374758 15374758 C T NBAS Silent p.Q2019Q 0.13 TCGA-A2-A04W-01 2 163059395 163059395 T C FAP Missense_Mutation p.T404A 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-A2-A04W-01 2 167133702 167133702 C A SCN9A Missense_Mutation p.G878C 0.08 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 2 190535312 190535312 C G ASNSD1 Missense_Mutation p.L598V 0.09 tolerated(0.89) benign(0.052) TCGA-A2-A04W-01 2 208993007 208993007 G A CRYGC Nonsense_Mutation p.Q149* 0.21 TCGA-A2-A04W-01 2 209302289 209302289 G A PTH2R Missense_Mutation p.G69E 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-A2-A04W-01 2 210594576 210594576 G A MAP2 Missense_Mutation p.G1720S 0.06 deleterious(0) probably_damaging(0.999) TCGA-A2-A04W-01 2 219269049 219269049 G C CTDSP1 Missense_Mutation p.M229I 0.08 tolerated(0.1) possibly_damaging(0.752) TCGA-A2-A04W-01 2 228172635 228172635 G T COL4A3 Nonsense_Mutation p.G1488* 0.11 TCGA-A2-A04W-01 2 27449820 27449820 G A CAD Missense_Mutation p.M759I 0.17 deleterious(0) benign(0.218) TCGA-A2-A04W-01 2 45778329 45778329 C T SRBD1 Missense_Mutation p.R537H 0.11 deleterious(0.02) probably_damaging(0.962) TCGA-A2-A04W-01 2 45789854 45789854 C T SRBD1 Silent p.T449T 0.29 TCGA-A2-A04W-01 2 48808551 48808551 C G STON1-GTF2A1L Missense_Mutation p.S260C 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-A2-A04W-01 2 71871094 71871094 G A DYSF Splice_Site p.X1510_splice 0.14 TCGA-A2-A04W-01 2 99013187 99013187 G A CNGA3 Silent p.E518E 0.17 TCGA-A2-A04W-01 3 140401809 140401809 G A TRIM42 Missense_Mutation p.E283K 0.14 tolerated(0.22) benign(0.02) TCGA-A2-A04W-01 3 142172007 142172007 G A ATR Missense_Mutation p.A2575V 0.15 tolerated(0.07) benign(0.073) TCGA-A2-A04W-01 3 157081410 157081410 G A VEPH1 Missense_Mutation p.P493L 0.10 deleterious(0.03) benign(0.021) TCGA-A2-A04W-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.43 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A04W-01 3 185347845 185347845 A G SENP2 3'UTR 0.38 TCGA-A2-A04W-01 3 195490502 195490502 G A MUC4 Silent p.F4685F 0.36 TCGA-A2-A04W-01 3 196792625 196792625 A G DLG1 Silent p.D751D 0.06 TCGA-A2-A04W-01 3 44959580 44959580 T A TGM4 3'Flank 0.09 TCGA-A2-A04W-01 4 114302763 114302763 C A ANK2 3'UTR 0.16 TCGA-A2-A04W-01 4 126412418 126412418 C G FAT4 Missense_Mutation p.S4814C 0.15 probably_damaging(0.995) TCGA-A2-A04W-01 4 187004407 187004407 G C TLR3 Missense_Mutation p.D523H 0.08 deleterious(0.04) possibly_damaging(0.649) TCGA-A2-A04W-01 4 2934188 2934188 C T MFSD10 Missense_Mutation p.G195R 0.10 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 4 3224137 3224137 G A HTT Missense_Mutation p.E2465K 0.12 probably_damaging(0.995) TCGA-A2-A04W-01 4 57677909 57677909 C G SPINK2 Missense_Mutation p.V51L 0.15 deleterious(0.01) probably_damaging(0.941) TCGA-A2-A04W-01 4 69334622 69334622 C A TMPRSS11E Missense_Mutation p.P95Q 0.15 tolerated(0.31) benign(0.064) TCGA-A2-A04W-01 4 70825773 70825773 C G CSN2 Missense_Mutation p.E26Q 0.05 tolerated(0.13) unknown(0) TCGA-A2-A04W-01 4 94031970 94031970 G A GRID2 Missense_Mutation p.E201K 0.17 deleterious(0.03) possibly_damaging(0.626) TCGA-A2-A04W-01 4 96123917 96123917 C T UNC5C Missense_Mutation p.V701I 0.28 tolerated(0.07) benign(0.005) TCGA-A2-A04W-01 5 13708337 13708337 G A DNAH5 Silent p.L4411L 0.13 TCGA-A2-A04W-01 5 140214152 140214152 C T PCDHA7 Missense_Mutation p.R62C 0.11 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-A2-A04W-01 5 140552525 140552525 G A PCDHB7 Missense_Mutation p.E37K 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-A2-A04W-01 5 140798033 140798033 G A PCDHGB7 Missense_Mutation p.E203K 0.18 deleterious(0) probably_damaging(1) TCGA-A2-A04W-01 5 160067594 160067594 C G ATP10B Missense_Mutation p.E292Q 0.13 deleterious(0) probably_damaging(0.952) TCGA-A2-A04W-01 5 167855767 167855767 G A WWC1 Missense_Mutation p.A659T 0.14 tolerated(1) benign(0) TCGA-A2-A04W-01 5 178408844 178408844 C T GRM6 Silent p.Q816Q 0.19 TCGA-A2-A04W-01 5 22078808 22078808 G A CDH12 5'UTR 0.10 TCGA-A2-A04W-01 5 74998511 74998511 T C POC5 Missense_Mutation p.I144M 0.05 tolerated(0.07) benign(0.277) TCGA-A2-A04W-01 6 116905906 116905906 C G RWDD1 Silent p.L52L 0.04 TCGA-A2-A04W-01 6 116905943 116905943 C T RWDD1 Missense_Mutation p.P65S 0.04 deleterious(0.04) probably_damaging(0.983) TCGA-A2-A04W-01 6 150387233 150387233 C G ULBP3 Missense_Mutation p.E52Q 0.16 tolerated(0.11) possibly_damaging(0.516) TCGA-A2-A04W-01 6 27805901 27805901 C T HIST1H2AK Missense_Mutation p.D73N 0.14 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-A2-A04W-01 6 51701226 51701226 C A PKHD1 Nonsense_Mutation p.E2717* 0.10 TCGA-A2-A04W-01 6 70070933 70070933 G C BAI3 Missense_Mutation p.L1256F 0.21 tolerated(0.57) benign(0.276) TCGA-A2-A04W-01 6 90371881 90371881 C G MDN1 Missense_Mutation p.K4830N 0.11 benign(0.008) TCGA-A2-A04W-01 7 100685492 100685492 C T MUC17 Missense_Mutation p.P3599S 0.26 benign(0) TCGA-A2-A04W-01 7 128850818 128850818 G A SMO Silent p.Q555Q 0.22 TCGA-A2-A04W-01 7 129909506 129909506 C T CPA2 Intron 0.09 TCGA-A2-A04W-01 7 138944054 138944054 G A UBN2 Silent p.R281R 0.13 TCGA-A2-A04W-01 7 158449288 158449288 C T NCAPG2 Missense_Mutation p.E724K 0.12 deleterious(0) probably_damaging(0.986) TCGA-A2-A04W-01 7 2515315 2515315 C G GRIFIN RNA 0.20 TCGA-A2-A04W-01 7 26223382 26223382 C T NFE2L3 Missense_Mutation p.S271L 0.08 deleterious(0) probably_damaging(0.948) TCGA-A2-A04W-01 7 39503850 39503850 G C POU6F2 Silent p.L547L 0.20 TCGA-A2-A04W-01 7 5399197 5399197 C T TNRC18 Silent p.L1555L 0.14 TCGA-A2-A04W-01 7 80418802 80418802 C A SEMA3C Nonsense_Mutation p.E392* 0.12 TCGA-A2-A04W-01 7 83119463 83119463 G A SEMA3E Silent p.L81L 0.12 TCGA-A2-A04W-01 7 83634727 83634727 G C SEMA3A Missense_Mutation p.Q430E 0.10 tolerated(0.33) possibly_damaging(0.698) TCGA-A2-A04W-01 7 92163938 92163938 C T RBM48 Missense_Mutation p.S224F 0.10 tolerated(0.73) benign(0.004) TCGA-A2-A04W-01 8 101092487 101092487 G C RGS22 Missense_Mutation p.L72V 0.14 deleterious(0.01) benign(0.055) TCGA-A2-A04W-01 8 124132400 124132400 C T TBC1D31 Silent p.I514I 0.10 TCGA-A2-A04W-01 8 133945871 133945871 G T TG Missense_Mutation p.D1628Y 0.18 deleterious(0) possibly_damaging(0.705) TCGA-A2-A04W-01 8 145001160 145001160 C G PLEC Missense_Mutation p.E1447D 0.13 unknown(0) TCGA-A2-A04W-01 8 41397268 41397268 G A GINS4 Silent p.S123S 0.27 TCGA-A2-A04W-01 9 114429136 114429136 G C DNAJC25-GNG10 Missense_Mutation p.Q126H 0.15 deleterious(0.02) possibly_damaging(0.452) TCGA-A2-A04W-01 9 123280807 123280807 C G CDK5RAP2 Missense_Mutation p.K403N 0.07 deleterious(0.01) benign(0.403) TCGA-A2-A04W-01 9 124751831 124751831 G C TTLL11 Silent p.L394L 0.10 TCGA-A2-A04W-01 9 130478476 130478476 G A PTRH1 5'UTR 0.18 TCGA-A2-A04W-01 9 138845595 138845595 G C UBAC1 Silent p.V88V 0.12 TCGA-A2-A04W-01 9 140126583 140126583 C T SLC34A3 Nonsense_Mutation p.Q49* 0.18 TCGA-A2-A04W-01 9 14868949 14868949 C T FREM1 Silent p.A9A 0.18 TCGA-A2-A04W-01 9 32634886 32634886 A G TAF1L Missense_Mutation p.L231S 0.21 deleterious(0) benign(0.184) TCGA-A2-A04W-01 9 35722140 35722140 G T TLN1 Nonsense_Mutation p.Y308* 0.14 TCGA-A2-A04W-01 9 35722141 35722141 T C TLN1 Missense_Mutation p.Y308C 0.14 deleterious(0) probably_damaging(0.932) TCGA-A2-A04W-01 X 114250364 114250364 C G IL13RA2 Missense_Mutation p.E39Q 0.10 tolerated(0.85) benign(0.003) TCGA-A2-A04W-01 X 151815558 151815558 C T GABRQ Silent p.F152F 0.12 TCGA-A2-A04W-01 X 153069027 153069027 G A PDZD4 Silent p.F697F 0.12 TCGA-A2-A04W-01 X 17819634 17819634 G A RAI2 Missense_Mutation p.P166L 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-A2-A04W-01 X 27765792 27765792 G A DCAF8L2 Silent p.Q260Q 0.11 TCGA-A2-A04W-01 X 28807488 28807488 C G IL1RAPL1 Missense_Mutation p.L10V 0.06 tolerated(0.21) benign(0) TCGA-A2-A04W-01 X 29301288 29301288 C T IL1RAPL1 Missense_Mutation p.R106W 0.13 tolerated(0.16) probably_damaging(0.993) TCGA-A2-A04W-01 X 34150228 34150228 G A FAM47A Silent p.D56D 0.21 TCGA-A2-A04W-01 X 41043788 41043788 G C USP9X Missense_Mutation p.D1140H 0.09 deleterious(0.04) probably_damaging(0.996) TCGA-A2-A04W-01 X 47272857 47272857 G A ZNF157 Missense_Mutation p.R462Q 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-A2-A04W-01 X 68060416 68060416 G C EFNB1 Silent p.V320V 0.10 TCGA-A2-A04W-01 X 70470400 70470400 G A ZMYM3 Nonsense_Mutation p.Q319* 0.07 TCGA-A2-A04W-01 X 73963037 73963037 G A KIAA2022 Missense_Mutation p.A452V 0.16 tolerated(0.53) benign(0.012) TCGA-A2-A0CK-01 10 134563107 134563107 C T INPP5A Silent p.N273N 0.26 TCGA-A2-A0CK-01 11 134179638 134179638 G A GLB1L3 Silent p.S360S 0.58 TCGA-A2-A0CK-01 12 57501977 57501977 G A STAT6 Missense_Mutation p.L29F 0.33 tolerated(0.35) possibly_damaging(0.565) TCGA-A2-A0CK-01 13 112722319 112722319 C T SOX1 Missense_Mutation p.P116L 0.26 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CK-01 13 114098848 114098848 C T ADPRHL1 Missense_Mutation p.V91I 0.29 tolerated(0.09) benign(0.013) TCGA-A2-A0CK-01 14 21557556 21557556 A T ARHGEF40 3'UTR 0.36 TCGA-A2-A0CK-01 16 67683046 67683046 G A RLTPR Silent p.A553A 0.53 TCGA-A2-A0CK-01 16 68844244 68844244 G T CDH1 Nonsense_Mutation p.G278* 0.42 TCGA-A2-A0CK-01 17 64880774 64880774 C T CACNG5 Missense_Mutation p.T189M 0.28 deleterious(0.02) benign(0.036) TCGA-A2-A0CK-01 19 47507987 47507987 C G ARHGAP35 3'UTR 0.36 TCGA-A2-A0CK-01 19 47823398 47823398 G A C5AR1 Missense_Mutation p.A122T 0.38 tolerated(0.07) benign(0.405) TCGA-A2-A0CK-01 19 49490524 49490524 C T GYS1 Missense_Mutation p.G140E 0.36 tolerated(0.15) possibly_damaging(0.721) TCGA-A2-A0CK-01 19 54466634 54466634 G A CACNG8 Missense_Mutation p.G80S 0.57 deleterious(0.03) probably_damaging(0.949) TCGA-A2-A0CK-01 1 104116891 104116891 C T AMY2B Silent p.L252L 0.15 TCGA-A2-A0CK-01 1 110738284 110738284 C T SLC6A17 Silent p.F523F 0.07 TCGA-A2-A0CK-01 1 28169800 28169801 - A PPP1R8 Frame_Shift_Ins p.R200Tfs*6 0.31 TCGA-A2-A0CK-01 2 55775901 55775901 G T SMEK2 3'UTR 0.16 TCGA-A2-A0CK-01 3 32933730 32933730 A T TRIM71 3'UTR 0.36 TCGA-A2-A0CK-01 3 36484914 36484914 C T STAC Missense_Mutation p.A57V 0.32 tolerated(0.79) possibly_damaging(0.46) TCGA-A2-A0CK-01 3 45785940 45785940 G T SACM1L 3'UTR 0.32 TCGA-A2-A0CK-01 3 49052255 49052255 C T WDR6 Intron 0.19 TCGA-A2-A0CK-01 4 70939847 70939847 A - CSN1S2AP RNA 0.39 TCGA-A2-A0CK-01 5 140764698 140764698 C T PCDHGA7 Silent p.D744D 0.35 TCGA-A2-A0CK-01 5 140866201 140866201 T C PCDHGC4 Silent p.N487N 0.15 TCGA-A2-A0CK-01 5 14287160 14287160 A G TRIO Silent p.K176K 0.31 TCGA-A2-A0CK-01 5 180001594 180001594 T C CNOT6 3'UTR 0.31 TCGA-A2-A0CK-01 7 100781501 100781501 C T SERPINE1 3'UTR 0.35 TCGA-A2-A0CK-01 9 109691404 109691404 C T ZNF462 Silent p.S1737S 0.39 TCGA-A2-A0CK-01 9 36246269 36246269 C T GNE Silent p.L156L 0.32 TCGA-A2-A0CK-01 X 44941830 44941831 - A KDM6A Frame_Shift_Ins p.R1054Kfs*5 0.22 TCGA-A2-A0CL-01 10 101912047 101912047 C G ERLIN1 Missense_Mutation p.K296N 0.03 deleterious(0) probably_damaging(0.988) TCGA-A2-A0CL-01 10 128817083 128817083 G A DOCK1 Silent p.P416P 0.04 TCGA-A2-A0CL-01 10 135085413 135085413 C G ADAM8 Missense_Mutation p.E335Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CL-01 10 51770038 51770038 C A AGAP6 3'UTR 0.05 TCGA-A2-A0CL-01 10 65354586 65354586 G A REEP3 Missense_Mutation p.E52K 0.02 deleterious(0) probably_damaging(1) TCGA-A2-A0CL-01 10 69933947 69933947 C T MYPN Missense_Mutation p.P700S 0.09 tolerated(1) benign(0) TCGA-A2-A0CL-01 10 70700875 70700875 G A DDX50 Nonsense_Mutation p.W605* 0.04 TCGA-A2-A0CL-01 10 75567237 75567237 G A NDST2 Missense_Mutation p.R304C 0.04 deleterious(0) probably_damaging(0.988) TCGA-A2-A0CL-01 10 75602237 75602237 G A CAMK2G Silent p.F294F 0.04 TCGA-A2-A0CL-01 10 81838622 81838622 G A TMEM254 Intron 0.06 TCGA-A2-A0CL-01 10 88477777 88477777 C T LDB3 Missense_Mutation p.A583V 0.04 deleterious(0) probably_damaging(0.989) TCGA-A2-A0CL-01 11 110035921 110035921 C T ZC3H12C Missense_Mutation p.P704L 0.12 deleterious(0.01) benign(0.167) TCGA-A2-A0CL-01 11 118635961 118635961 C G DDX6 Missense_Mutation p.G201A 0.05 deleterious(0) probably_damaging(0.959) TCGA-A2-A0CL-01 11 119982968 119982968 G A TRIM29 3'UTR 0.15 TCGA-A2-A0CL-01 11 124266396 124266396 G C OR8B3 Silent p.L284L 0.06 TCGA-A2-A0CL-01 11 3122897 3122897 G T OSBPL5 Missense_Mutation p.H486Q 0.06 deleterious(0.01) possibly_damaging(0.898) TCGA-A2-A0CL-01 11 33566371 33566371 G C KIAA1549L Silent p.L647L 0.07 TCGA-A2-A0CL-01 11 34533205 34533205 C T ELF5 5'UTR 0.04 TCGA-A2-A0CL-01 11 45948049 45948049 C G GYLTL1B Missense_Mutation p.F355L 0.03 tolerated(0.18) benign(0.003) TCGA-A2-A0CL-01 11 55563270 55563270 C T OR5D14 Missense_Mutation p.T80I 0.03 tolerated(0.06) benign(0.178) TCGA-A2-A0CL-01 11 58723327 58723327 C T GLYATL1 Nonsense_Mutation p.R277* 0.10 TCGA-A2-A0CL-01 11 70333710 70333710 C T SHANK2 Silent p.P897P 0.05 TCGA-A2-A0CL-01 11 74340322 74340322 G C POLD3 Missense_Mutation p.K320N 0.04 deleterious(0) probably_damaging(1) TCGA-A2-A0CL-01 11 89182612 89182612 G A NOX4 Silent p.F115F 0.09 TCGA-A2-A0CL-01 12 11183732 11183732 G C TAS2R31 Nonsense_Mutation p.S68* 0.04 TCGA-A2-A0CL-01 12 121784745 121784745 A C ANAPC5 Missense_Mutation p.D117E 0.04 tolerated(0.26) benign(0.03) TCGA-A2-A0CL-01 12 21526278 21526278 G C IAPP 5'UTR 0.04 TCGA-A2-A0CL-01 12 21991082 21991082 T A ABCC9 Missense_Mutation p.S1166C 0.06 tolerated(0.09) possibly_damaging(0.879) TCGA-A2-A0CL-01 12 23699266 23699266 C G SOX5 Silent p.L527L 0.07 TCGA-A2-A0CL-01 12 46602896 46602896 G T SLC38A1 Nonsense_Mutation p.S110* 0.09 TCGA-A2-A0CL-01 12 56482647 56482647 C T ERBB3 Silent p.L368L 0.09 TCGA-A2-A0CL-01 12 6700898 6700898 G C CHD4 Missense_Mutation p.L1062V 0.04 deleterious(0) possibly_damaging(0.636) TCGA-A2-A0CL-01 12 69233129 69233129 C T MDM2 Missense_Mutation p.R332C 0.10 deleterious(0) probably_damaging(0.995) TCGA-A2-A0CL-01 12 7045461 7045461 C T ATN1 Missense_Mutation p.P344L 0.15 probably_damaging(0.981) TCGA-A2-A0CL-01 12 7649631 7649631 C T CD163 Missense_Mutation p.D293N 0.07 tolerated(0.22) possibly_damaging(0.521) TCGA-A2-A0CL-01 12 85279785 85279785 C G SLC6A15 Missense_Mutation p.E118Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-A2-A0CL-01 13 42295543 42295543 G A VWA8 Missense_Mutation p.S976F 0.10 deleterious(0) probably_damaging(1) TCGA-A2-A0CL-01 13 52026139 52026139 A G INTS6 Missense_Mutation p.F55S 0.05 deleterious(0.05) benign(0.081) TCGA-A2-A0CL-01 14 21500171 21500171 A G TPPP2 Missense_Mutation p.T150A 0.10 tolerated(0.24) benign(0.019) TCGA-A2-A0CL-01 14 24458110 24458110 G C DHRS4L2 5'UTR 0.05 TCGA-A2-A0CL-01 14 39644578 39644578 G A PNN Missense_Mutation p.R32Q 0.06 deleterious(0.01) probably_damaging(0.96) TCGA-A2-A0CL-01 14 79746741 79746741 C T NRXN3 Intron 0.04 TCGA-A2-A0CL-01 15 34042471 34042471 G A RYR3 Missense_Mutation p.G2795S 0.04 probably_damaging(0.999) TCGA-A2-A0CL-01 15 51830470 51830470 C G DMXL2 Missense_Mutation p.E429Q 0.10 tolerated(0.32) probably_damaging(0.97) TCGA-A2-A0CL-01 15 54527233 54527233 G C UNC13C Missense_Mutation p.G1026A 0.08 tolerated_low_confidence(0.35) benign(0.006) TCGA-A2-A0CL-01 15 86228010 86228010 C T AKAP13 Missense_Mutation p.P1736L 0.06 deleterious(0.03) benign(0.074) TCGA-A2-A0CL-01 15 94882559 94882559 G C MCTP2 Missense_Mutation p.K226N 0.08 deleterious(0) probably_damaging(0.973) TCGA-A2-A0CL-01 16 14958467 14958467 G C NOMO1 Missense_Mutation p.R474T 0.05 deleterious(0.04) benign(0.093) TCGA-A2-A0CL-01 16 23436250 23436250 C T COG7 Missense_Mutation p.E277K 0.06 tolerated(0.39) benign(0.04) TCGA-A2-A0CL-01 16 23712415 23712415 C T ERN2 Silent p.E456E 0.07 TCGA-A2-A0CL-01 16 3074229 3074229 G A THOC6 5'UTR 0.08 TCGA-A2-A0CL-01 16 53495695 53495695 G T RBL2 Silent p.L463L 0.17 TCGA-A2-A0CL-01 16 66621884 66621884 C T CMTM2 Silent p.F203F 0.06 TCGA-A2-A0CL-01 16 67579760 67579760 G A FAM65A Silent p.E1148E 0.06 TCGA-A2-A0CL-01 16 73126775 73126775 G A HCCAT5 RNA 0.05 TCGA-A2-A0CL-01 16 73127004 73127004 G C HCCAT5 RNA 0.06 TCGA-A2-A0CL-01 16 73127108 73127108 G C HCCAT5 Intron 0.05 TCGA-A2-A0CL-01 17 10222395 10222395 G T MYH13 Silent p.I1150I 0.10 TCGA-A2-A0CL-01 17 10447318 10447318 T C MYH2 Silent p.A183A 0.03 TCGA-A2-A0CL-01 17 1584908 1584908 G A PRPF8 Nonsense_Mutation p.Q244* 0.06 TCGA-A2-A0CL-01 17 29162747 29162747 C G ATAD5 Missense_Mutation p.L550V 0.06 tolerated(0.18) benign(0.008) TCGA-A2-A0CL-01 17 33591377 33591377 C T SLFN5 Silent p.I438I 0.03 TCGA-A2-A0CL-01 17 35834698 35834698 C T TADA2A Silent p.L370L 0.04 TCGA-A2-A0CL-01 17 36626102 36626102 G A ARHGAP23 Missense_Mutation p.R644H 0.23 tolerated(0.16) probably_damaging(0.98) TCGA-A2-A0CL-01 17 41926239 41926239 G A CD300LG Silent p.L119L 0.07 TCGA-A2-A0CL-01 17 45905879 45905879 G A MRPL10 Silent p.S80S 0.06 TCGA-A2-A0CL-01 17 48245071 48245071 G A SGCA Missense_Mutation p.E96K 0.06 tolerated(0.18) benign(0.103) TCGA-A2-A0CL-01 17 5049319 5049319 G C USP6 Silent p.V723V 0.06 TCGA-A2-A0CL-01 17 5322878 5322878 C T NUP88 Silent p.L31L 0.05 TCGA-A2-A0CL-01 17 60765922 60765922 C A MRC2 Nonsense_Mutation p.S1041* 0.12 TCGA-A2-A0CL-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.18 deleterious(0) probably_damaging(0.993) TCGA-A2-A0CL-01 17 7678602 7678602 C T DNAH2 Missense_Mutation p.S1588L 0.09 probably_damaging(1) TCGA-A2-A0CL-01 18 12695273 12695273 G C CEP76 Missense_Mutation p.Q262E 0.05 tolerated(1) benign(0.002) TCGA-A2-A0CL-01 18 52942905 52942905 G C TCF4 Missense_Mutation p.S347C 0.06 tolerated(0.05) probably_damaging(0.992) TCGA-A2-A0CL-01 19 10692021 10692021 G A AP1M2 Silent p.I198I 0.04 TCGA-A2-A0CL-01 19 15740229 15740229 C G CYP4F8 RNA 0.05 TCGA-A2-A0CL-01 19 18423501 18423501 C T LSM4 Silent p.L19L 0.05 TCGA-A2-A0CL-01 19 20011798 20011798 C T ZNF93 5'Flank 0.06 TCGA-A2-A0CL-01 19 36509906 36509906 C T CLIP3 Silent p.K359K 0.07 TCGA-A2-A0CL-01 19 37005170 37005170 C T ZNF260 Missense_Mutation p.R324K 0.05 tolerated(0.08) probably_damaging(0.992) TCGA-A2-A0CL-01 19 40902534 40902534 C T PRX Silent p.P575P 0.07 TCGA-A2-A0CL-01 19 43864473 43864473 G A CD177 3'UTR 0.06 TCGA-A2-A0CL-01 19 51535184 51535184 G A KLK12 Silent p.T135T 0.17 TCGA-A2-A0CL-01 19 5591793 5591793 G A SAFB2 Missense_Mutation p.S787L 0.06 deleterious(0) possibly_damaging(0.602) TCGA-A2-A0CL-01 19 56300693 56300693 C T NLRP11 Silent p.L862L 0.04 TCGA-A2-A0CL-01 19 58639484 58639484 C A ZNF329 Missense_Mutation p.A463S 0.10 tolerated(0.42) benign(0.225) TCGA-A2-A0CL-01 19 58640219 58640219 G A ZNF329 Missense_Mutation p.L218F 0.05 tolerated(0.25) possibly_damaging(0.844) TCGA-A2-A0CL-01 19 8122693 8122693 C T CCL25 Missense_Mutation p.H112Y 0.07 tolerated(1) benign(0.081) TCGA-A2-A0CL-01 1 113238106 113238106 C G MOV10 Silent p.L563L 0.05 TCGA-A2-A0CL-01 1 117617696 117617696 G A TTF2 Missense_Mutation p.D164N 0.07 tolerated(0.08) benign(0.006) TCGA-A2-A0CL-01 1 155239343 155239343 C T CLK2 Missense_Mutation p.R112H 0.07 tolerated(0.12) possibly_damaging(0.674) TCGA-A2-A0CL-01 1 156182813 156182813 G T PMF1 Nonsense_Mutation p.E3* 0.06 TCGA-A2-A0CL-01 1 156933314 156933314 C G ARHGEF11 Missense_Mutation p.E346Q 0.04 tolerated(0.12) possibly_damaging(0.706) TCGA-A2-A0CL-01 1 173628511 173628511 G C ANKRD45 Nonsense_Mutation p.S16* 0.06 TCGA-A2-A0CL-01 1 186648459 186648459 G C PTGS2 Nonsense_Mutation p.S55* 0.06 TCGA-A2-A0CL-01 1 204438669 204438669 C T PIK3C2B Missense_Mutation p.D88N 0.05 tolerated_low_confidence(0.06) probably_damaging(0.989) TCGA-A2-A0CL-01 1 225190516 225190516 G A DNAH14 Missense_Mutation p.D288N 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-A2-A0CL-01 1 229567203 229567203 G C ACTA1 3'UTR 0.05 TCGA-A2-A0CL-01 1 237886498 237886498 C G RYR2 Nonsense_Mutation p.S3542* 0.06 TCGA-A2-A0CL-01 1 27121110 27121110 C G PIGV Silent p.L195L 0.04 TCGA-A2-A0CL-01 1 94506852 94506852 G C ABCA4 Silent p.L1145L 0.05 TCGA-A2-A0CL-01 20 10622147 10622147 C T JAG1 Silent p.A959A 0.06 TCGA-A2-A0CL-01 20 1145033 1145033 C T PSMF1 Missense_Mutation p.S226L 0.06 deleterious(0.03) benign(0.211) TCGA-A2-A0CL-01 20 17970619 17970619 G A MGME1 Missense_Mutation p.G301E 0.14 deleterious(0) probably_damaging(0.992) TCGA-A2-A0CL-01 20 25252034 25252034 C T PYGB Missense_Mutation p.S147L 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-A2-A0CL-01 20 3018747 3018747 G C PTPRA Missense_Mutation p.D793H 0.03 deleterious(0.04) possibly_damaging(0.861) TCGA-A2-A0CL-01 20 35414931 35414931 G C SOGA1 Missense_Mutation p.S1648C 0.04 tolerated(0.11) benign(0.014) TCGA-A2-A0CL-01 20 47683035 47683035 C T CSE1L Missense_Mutation p.S155L 0.05 deleterious(0) possibly_damaging(0.623) TCGA-A2-A0CL-01 21 34707894 34707894 G C IFNAR1 Silent p.L47L 0.03 TCGA-A2-A0CL-01 21 43413041 43413041 A G ZBTB21 Silent p.D388D 0.06 TCGA-A2-A0CL-01 21 45535280 45535280 C T PWP2 Silent p.D202D 0.10 TCGA-A2-A0CL-01 21 46705636 46705636 G A POFUT2 Silent p.L113L 0.10 TCGA-A2-A0CL-01 22 31484720 31484720 G T SMTN Silent p.L110L 0.06 TCGA-A2-A0CL-01 22 37912135 37912135 G A CARD10 Nonsense_Mutation p.Q182* 0.16 TCGA-A2-A0CL-01 2 100046338 100046338 G C REV1 Nonsense_Mutation p.S504* 0.10 TCGA-A2-A0CL-01 2 166179704 166179704 A T SCN2A Missense_Mutation p.R570S 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-A2-A0CL-01 2 166786176 166786176 G C TTC21B Missense_Mutation p.S390C 0.05 deleterious(0.01) probably_damaging(0.928) TCGA-A2-A0CL-01 2 191827719 191827719 C G GLS 3'UTR 0.15 TCGA-A2-A0CL-01 2 208030225 208030225 G C KLF7 Nonsense_Mutation p.S23* 0.07 TCGA-A2-A0CL-01 2 215876301 215876301 G C ABCA12 Missense_Mutation p.Q732E 0.09 tolerated(0.35) benign(0.003) TCGA-A2-A0CL-01 2 228134648 228134648 G C COL4A3 Missense_Mutation p.L509F 0.04 probably_damaging(0.934) TCGA-A2-A0CL-01 2 234460049 234460049 C T USP40 Silent p.R282R 0.05 TCGA-A2-A0CL-01 2 31189082 31189082 C A GALNT14 Missense_Mutation p.R134M 0.04 deleterious(0) probably_damaging(1) TCGA-A2-A0CL-01 2 31412168 31412168 G A CAPN14 Silent p.L488L 0.07 TCGA-A2-A0CL-01 2 64208977 64208977 G A VPS54 Nonsense_Mutation p.Q61* 0.05 TCGA-A2-A0CL-01 2 74274591 74274591 C T TET3 Missense_Mutation p.S381L 0.05 tolerated(0.06) benign(0.002) TCGA-A2-A0CL-01 2 74274693 74274693 C G TET3 Missense_Mutation p.A415G 0.06 tolerated(0.49) benign(0) TCGA-A2-A0CL-01 2 75929394 75929394 C T GCFC2 Missense_Mutation p.D184N 0.05 deleterious(0.03) benign(0.194) TCGA-A2-A0CL-01 3 113013566 113013566 C G WDR52 Missense_Mutation p.D1781H 0.03 deleterious(0) benign(0.242) TCGA-A2-A0CL-01 3 113013581 113013581 C T WDR52 Missense_Mutation p.E1776K 0.04 deleterious(0) possibly_damaging(0.886) TCGA-A2-A0CL-01 3 120500308 120500308 C G GTF2E1 Silent p.L437L 0.06 TCGA-A2-A0CL-01 3 123652573 123652573 C G CCDC14 Missense_Mutation p.R465T 0.04 deleterious(0.01) benign(0.005) TCGA-A2-A0CL-01 3 136676895 136676895 G C IL20RB 5'UTR 0.06 TCGA-A2-A0CL-01 3 138153804 138153804 T C ESYT3 Missense_Mutation p.L55P 0.03 deleterious(0) possibly_damaging(0.86) TCGA-A2-A0CL-01 3 170736326 170736326 A G SLC2A2 Silent p.P34P 0.17 TCGA-A2-A0CL-01 4 56883874 56883874 C T CEP135 Nonsense_Mutation p.R955* 0.09 TCGA-A2-A0CL-01 4 72316941 72316941 G A SLC4A4 Missense_Mutation p.M415I 0.04 tolerated(0.28) benign(0.008) TCGA-A2-A0CL-01 5 10433819 10433819 C A MARCH6 3'UTR 0.05 TCGA-A2-A0CL-01 5 167984496 167984496 G A PANK3 3'UTR 0.05 TCGA-A2-A0CL-01 5 167984561 167984561 G C PANK3 3'UTR 0.03 TCGA-A2-A0CL-01 5 169780917 169780917 G A KCNIP1 Missense_Mutation p.V13M 0.04 tolerated_low_confidence(0.27) benign(0.016) TCGA-A2-A0CL-01 5 37438023 37438023 G C WDR70 Splice_Site p.X165_splice 0.05 TCGA-A2-A0CL-01 5 40746967 40746967 G A TTC33 Missense_Mutation p.L52F 0.08 deleterious(0.02) benign(0.012) TCGA-A2-A0CL-01 6 109935455 109935455 C T AK9 Missense_Mutation p.D514N 0.05 tolerated(0.29) benign(0.048) TCGA-A2-A0CL-01 6 11185731 11185731 G C NEDD9 Silent p.L723L 0.05 TCGA-A2-A0CL-01 6 135644408 135644408 G T AHI1 Missense_Mutation p.R1074S 0.10 deleterious(0) probably_damaging(0.994) TCGA-A2-A0CL-01 6 160831831 160831831 C T SLC22A3 Missense_Mutation p.R310C 0.09 deleterious(0.01) benign(0.436) TCGA-A2-A0CL-01 6 26104478 26104478 C T HIST1H4C Silent p.F101F 0.08 TCGA-A2-A0CL-01 6 46803035 46803035 G A MEP1A Silent p.L611L 0.14 TCGA-A2-A0CL-01 6 62757796 62757796 C T KHDRBS2 Missense_Mutation p.R108K 0.04 tolerated(0.18) benign(0.306) TCGA-A2-A0CL-01 6 74114492 74114492 G C DDX43 Missense_Mutation p.W216C 0.08 deleterious(0) probably_damaging(0.996) TCGA-A2-A0CL-01 6 76558200 76558200 G A MYO6 Missense_Mutation p.V344I 0.04 tolerated(0.14) unknown(0) TCGA-A2-A0CL-01 6 90642603 90642603 C A BACH2 Nonsense_Mutation p.E684* 0.04 TCGA-A2-A0CL-01 7 103004698 103004698 G C PSMC2 Missense_Mutation p.D234H 0.05 deleterious(0.01) probably_damaging(1) TCGA-A2-A0CL-01 7 142641481 142641481 G A KEL Nonsense_Mutation p.Q474* 0.10 TCGA-A2-A0CL-01 7 14613891 14613891 C G DGKB Missense_Mutation p.E573D 0.04 tolerated(0.07) benign(0.175) TCGA-A2-A0CL-01 7 21603889 21603889 G A DNAH11 Silent p.Q356Q 0.04 TCGA-A2-A0CL-01 7 22259518 22259518 C T RAPGEF5 Silent p.Q168Q 0.03 TCGA-A2-A0CL-01 7 22767189 22767189 C G IL6 Missense_Mutation p.S49C 0.04 deleterious(0.01) possibly_damaging(0.876) TCGA-A2-A0CL-01 7 23313149 23313149 C T GPNMB Missense_Mutation p.S492L 0.07 deleterious(0.01) benign(0.371) TCGA-A2-A0CL-01 7 2748322 2748322 C T AMZ1 Silent p.F191F 0.05 TCGA-A2-A0CL-01 7 66410066 66410066 C T TMEM248 Missense_Mutation p.T88I 0.05 deleterious(0.03) benign(0.022) TCGA-A2-A0CL-01 7 75615743 75615743 G A POR Missense_Mutation p.D663N 0.08 tolerated(0.23) benign(0.004) TCGA-A2-A0CL-01 7 75617804 75617804 G C POR 3'Flank 0.04 TCGA-A2-A0CL-01 7 79828550 79828550 C T GNAI1 Missense_Mutation p.R105C 0.08 deleterious(0) possibly_damaging(0.621) TCGA-A2-A0CL-01 7 92734279 92734279 C G SAMD9 Missense_Mutation p.E378Q 0.06 deleterious(0) benign(0.393) TCGA-A2-A0CL-01 7 98515263 98515263 C G TRRAP Silent p.L861L 0.06 TCGA-A2-A0CL-01 8 10466760 10466760 G C RP1L1 Silent p.L1616L 0.10 TCGA-A2-A0CL-01 8 124988240 124988240 C T FER1L6 Silent p.I262I 0.04 TCGA-A2-A0CL-01 8 145268054 145268054 C G MROH1 Intron 0.10 TCGA-A2-A0CL-01 8 145268119 145268119 C T MROH1 Intron 0.11 TCGA-A2-A0CL-01 8 145770961 145770961 C A ARHGAP39 Missense_Mutation p.M731I 0.06 deleterious(0) benign(0.234) TCGA-A2-A0CL-01 8 21560406 21560406 G A GFRA2 Missense_Mutation p.R377W 0.07 tolerated(0.09) benign(0) TCGA-A2-A0CL-01 8 72973884 72973884 C G TRPA1 Missense_Mutation p.G307A 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A0CL-01 8 99963958 99963958 G A OSR2 3'UTR 0.14 TCGA-A2-A0CL-01 9 100372691 100372691 C G TSTD2 Missense_Mutation p.G258R 0.07 deleterious(0) probably_damaging(0.997) TCGA-A2-A0CL-01 9 102747332 102747332 G C ERP44 Missense_Mutation p.Q346E 0.04 tolerated(0.12) benign(0.17) TCGA-A2-A0CL-01 9 111753063 111753063 G A CTNNAL1 Silent p.F194F 0.04 TCGA-A2-A0CL-01 9 131371495 131371495 G C SPTAN1 Missense_Mutation p.E1564Q 0.05 deleterious(0.02) unknown(0) TCGA-A2-A0CL-01 9 131587304 131587304 C G C9orf114 Missense_Mutation p.E222Q 0.10 tolerated(0.9) benign(0.007) TCGA-A2-A0CL-01 9 20715367 20715367 C G FOCAD Missense_Mutation p.I5M 0.09 deleterious(0.04) possibly_damaging(0.51) TCGA-A2-A0CL-01 9 33266045 33266045 C G CHMP5 Missense_Mutation p.S36C 0.05 deleterious(0.02) possibly_damaging(0.676) TCGA-A2-A0CL-01 9 84231608 84231608 C T TLE1 Missense_Mutation p.D240N 0.06 deleterious(0.03) possibly_damaging(0.901) TCGA-A2-A0CL-01 9 84607787 84607787 C G SPATA31D1 Missense_Mutation p.S801C 0.07 deleterious(0.01) benign(0.338) TCGA-A2-A0CL-01 9 95400389 95400389 C A IPPK Silent p.L270L 0.07 TCGA-A2-A0CL-01 9 99521617 99521617 G A ZNF510 Nonsense_Mutation p.Q499* 0.08 TCGA-A2-A0CL-01 X 101821552 101821552 C T NXF4 Intron 0.18 TCGA-A2-A0CL-01 X 10535161 10535161 C T MID1 Missense_Mutation p.D143N 0.05 tolerated(0.22) benign(0.233) TCGA-A2-A0CL-01 X 105937219 105937219 C G RNF128 5'UTR 0.13 TCGA-A2-A0CL-01 X 106396466 106396466 C G NUP62CL Missense_Mutation p.E156Q 0.05 deleterious(0.01) benign(0.292) TCGA-A2-A0CL-01 X 109698493 109698493 C T RGAG1 Missense_Mutation p.H1371Y 0.05 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-A2-A0CL-01 X 129769019 129769019 A C ENOX2 Missense_Mutation p.L482R 0.17 deleterious(0) possibly_damaging(0.888) TCGA-A2-A0CL-01 X 135591271 135591271 G A HTATSF1 Missense_Mutation p.E286K 0.07 deleterious(0) possibly_damaging(0.648) TCGA-A2-A0CL-01 X 152684176 152684176 G A ZFP92 Missense_Mutation p.E27K 0.03 deleterious(0) possibly_damaging(0.809) TCGA-A2-A0CL-01 X 15473993 15473993 G C PIR Missense_Mutation p.S153C 0.03 deleterious(0) probably_damaging(0.938) TCGA-A2-A0CL-01 X 26211971 26211971 G A MAGEB6 Missense_Mutation p.R3Q 0.06 deleterious(0.01) probably_damaging(0.916) TCGA-A2-A0CL-01 X 49050741 49050741 G A SYP Missense_Mutation p.S102L 0.04 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CL-01 X 54783407 54783407 C T ITIH6 Missense_Mutation p.D1034N 0.05 tolerated(0.17) probably_damaging(0.922) TCGA-A2-A0CL-01 X 57313286 57313286 C T FAAH2 Nonsense_Mutation p.Q10* 0.09 TCGA-A2-A0CL-01 X 83723943 83723943 C T HDX Missense_Mutation p.R263H 0.14 deleterious(0.01) possibly_damaging(0.488) TCGA-A2-A0CR-01 10 103990108 103990108 C A PITX3 3'UTR 0.12 TCGA-A2-A0CR-01 10 120810767 120810767 C T EIF3A Missense_Mutation p.E755K 0.11 tolerated(0.27) unknown(0) TCGA-A2-A0CR-01 10 21071054 21071054 G C NEBL 3'UTR 0.14 TCGA-A2-A0CR-01 10 32561961 32561961 C A EPC1 Missense_Mutation p.G638V 0.11 tolerated(0.37) benign(0.038) TCGA-A2-A0CR-01 10 46238914 46238914 G A FAM21C Missense_Mutation p.G202E 0.11 deleterious(0) probably_damaging(1) TCGA-A2-A0CR-01 10 5494457 5494457 C T NET1 Missense_Mutation p.S167F 0.10 deleterious(0.03) possibly_damaging(0.836) TCGA-A2-A0CR-01 10 74326393 74326393 C T MICU1 Silent p.K53K 0.21 TCGA-A2-A0CR-01 10 92502005 92502005 G A HTR7 3'UTR 0.12 TCGA-A2-A0CR-01 10 97817808 97817808 C T CCNJ Missense_Mutation p.S321L 0.08 tolerated(0.22) benign(0.106) TCGA-A2-A0CR-01 11 33102667 33102667 G C CSTF3 3'Flank 0.15 TCGA-A2-A0CR-01 11 47494730 47494730 G A CELF1 Nonsense_Mutation p.Q441* 0.19 TCGA-A2-A0CR-01 11 5255431 5255431 G C HBD Silent p.V35V 0.10 TCGA-A2-A0CR-01 11 57971579 57971579 G A OR1S2 Silent p.F25F 0.12 TCGA-A2-A0CR-01 11 5906158 5906158 G C OR52E4 Silent p.V212V 0.10 TCGA-A2-A0CR-01 11 62406907 62406907 G A GANAB Missense_Mutation p.P59L 0.18 tolerated(0.25) possibly_damaging(0.784) TCGA-A2-A0CR-01 11 67262602 67262602 G C PITPNM1 Silent p.L859L 0.09 TCGA-A2-A0CR-01 11 67821388 67821388 G A CHKA 3'UTR 0.18 TCGA-A2-A0CR-01 11 93493023 93493023 C G C11orf54 Missense_Mutation p.P208R 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A0CR-01 12 101433799 101433799 G C ANO4 Missense_Mutation p.E287Q 0.12 tolerated(0.38) benign(0.187) TCGA-A2-A0CR-01 12 10277955 10277955 T G CLEC7A Missense_Mutation p.K145Q 0.17 tolerated(0.22) possibly_damaging(0.894) TCGA-A2-A0CR-01 12 122255275 122255275 G C SETD1B Splice_Site p.X993_splice 0.22 TCGA-A2-A0CR-01 12 12640030 12640030 C T DUSP16 Missense_Mutation p.R208H 0.11 deleterious(0) possibly_damaging(0.902) TCGA-A2-A0CR-01 12 26491395 26491395 C T ITPR2 3'UTR 0.11 TCGA-A2-A0CR-01 12 48177530 48177530 G A HDAC7 3'UTR 0.12 TCGA-A2-A0CR-01 12 52201229 52201229 C T SCN8A 3'UTR 0.17 TCGA-A2-A0CR-01 12 52710344 52710344 C T KRT83 Missense_Mutation p.G317R 0.11 tolerated(0.06) benign(0.44) TCGA-A2-A0CR-01 12 54576104 54576104 C T SMUG1 Missense_Mutation p.A197T 0.18 tolerated(0.08) benign(0.14) TCGA-A2-A0CR-01 12 56221820 56221820 C A DNAJC14 Missense_Mutation p.R208L 0.19 deleterious_low_confidence(0.01) benign(0.187) TCGA-A2-A0CR-01 12 6701124 6701124 C G CHD4 Missense_Mutation p.K1016N 0.35 deleterious(0) probably_damaging(0.937) TCGA-A2-A0CR-01 12 81762938 81762938 C G PPFIA2 Missense_Mutation p.M434I 0.10 tolerated(0.21) benign(0.061) TCGA-A2-A0CR-01 13 20425884 20425884 G A ZMYM5 Missense_Mutation p.T146I 0.11 tolerated_low_confidence(0.12) probably_damaging(0.934) TCGA-A2-A0CR-01 13 47286673 47286673 C G LRCH1 Missense_Mutation p.S532C 0.17 deleterious(0.01) possibly_damaging(0.834) TCGA-A2-A0CR-01 13 74269782 74269782 C T KLF12 Missense_Mutation p.E352K 0.10 deleterious(0.01) possibly_damaging(0.856) TCGA-A2-A0CR-01 13 99446096 99446096 C G DOCK9 3'UTR 0.13 TCGA-A2-A0CR-01 14 101348427 101348427 C T RTL1 Missense_Mutation p.R900K 0.14 tolerated(0.77) benign(0.001) TCGA-A2-A0CR-01 14 103405981 103405981 C G CDC42BPB Missense_Mutation p.G1598A 0.16 deleterious(0.01) benign(0.163) TCGA-A2-A0CR-01 14 103406238 103406238 C G CDC42BPB Missense_Mutation p.Q1546H 0.10 deleterious(0.03) possibly_damaging(0.615) TCGA-A2-A0CR-01 14 58471784 58471784 G A C14orf37 Silent p.F746F 0.09 TCGA-A2-A0CR-01 14 64490980 64490980 C G SYNE2 Missense_Mutation p.F1881L 0.09 possibly_damaging(0.689) TCGA-A2-A0CR-01 14 75265799 75265799 G A YLPM1 Missense_Mutation p.D1267N 0.21 probably_damaging(0.991) TCGA-A2-A0CR-01 14 75265853 75265853 G A YLPM1 Missense_Mutation p.D1285N 0.08 probably_damaging(0.991) TCGA-A2-A0CR-01 14 75265919 75265919 G C YLPM1 Missense_Mutation p.E1307Q 0.10 probably_damaging(0.986) TCGA-A2-A0CR-01 14 75266090 75266090 G C YLPM1 Missense_Mutation p.D1364H 0.21 probably_damaging(0.998) TCGA-A2-A0CR-01 14 75266123 75266123 G C YLPM1 Missense_Mutation p.E1375Q 0.14 probably_damaging(0.986) TCGA-A2-A0CR-01 15 28518063 28518071 CAGCTCCAG - HERC2 In_Frame_Del p.L294_L296del 0.11 TCGA-A2-A0CR-01 15 41853322 41853322 C T TYRO3 Intron 0.09 TCGA-A2-A0CR-01 15 48559802 48559802 G A SLC12A1 Silent p.A733A 0.11 TCGA-A2-A0CR-01 15 90233925 90233925 C G PEX11A 5'UTR 0.10 TCGA-A2-A0CR-01 15 90611126 90611126 G A ZNF710 Missense_Mutation p.E253K 0.12 tolerated(0.1) benign(0.187) TCGA-A2-A0CR-01 15 90611138 90611138 G A ZNF710 Missense_Mutation p.D257N 0.13 tolerated(0.26) benign(0.305) TCGA-A2-A0CR-01 15 91491411 91491411 C T UNC45A Silent p.R545R 0.17 TCGA-A2-A0CR-01 15 91524812 91524812 C T PRC1 Missense_Mutation p.E197K 0.09 deleterious(0) probably_damaging(0.992) TCGA-A2-A0CR-01 16 2260124 2260124 C T BRICD5 Intron 0.08 TCGA-A2-A0CR-01 16 2349496 2349496 C G ABCA3 Missense_Mutation p.R550T 0.13 deleterious(0) benign(0.01) TCGA-A2-A0CR-01 16 68835596 68835596 C T CDH1 Nonsense_Mutation p.R63* 0.11 TCGA-A2-A0CR-01 16 88800836 88800836 C T PIEZO1 Missense_Mutation p.R703K 0.14 tolerated(0.78) benign(0.002) TCGA-A2-A0CR-01 17 10450932 10450932 G A MYH2 Silent p.L70L 0.11 TCGA-A2-A0CR-01 17 28088351 28088351 G A SSH2 Intron 0.23 TCGA-A2-A0CR-01 17 29130962 29130962 G C CRLF3 Silent p.L98L 0.13 TCGA-A2-A0CR-01 17 29528088 29528088 A T NF1 Nonsense_Mutation p.R366* 0.10 TCGA-A2-A0CR-01 17 38189363 38189363 C T MED24 Silent p.L256L 0.21 TCGA-A2-A0CR-01 17 45760712 45760712 A G KPNB1 3'UTR 0.10 TCGA-A2-A0CR-01 17 46690092 46690092 G C HOXB8 3'UTR 0.20 TCGA-A2-A0CR-01 17 47696471 47696471 C T SPOP Splice_Site p.X118_splice 0.20 TCGA-A2-A0CR-01 17 61771096 61771096 G C MAP3K3 Missense_Mutation p.E645Q 0.17 tolerated(0.07) benign(0.141) TCGA-A2-A0CR-01 17 61951012 61951012 T G CSH2 5'UTR 0.21 TCGA-A2-A0CR-01 17 61951021 61951021 T C CSH2 5'UTR 0.22 TCGA-A2-A0CR-01 17 72700705 72700705 G C CD300LF Silent p.L98L 0.15 TCGA-A2-A0CR-01 17 73204681 73204681 G A NUP85 Silent p.E31E 0.12 TCGA-A2-A0CR-01 18 19088440 19088440 C G GREB1L Missense_Mutation p.I1541M 0.12 deleterious(0.01) possibly_damaging(0.575) TCGA-A2-A0CR-01 18 30092681 30092681 G C WBP11P1 RNA 0.09 TCGA-A2-A0CR-01 18 31324143 31324143 G A ASXL3 Missense_Mutation p.R1444Q 0.11 benign(0.011) TCGA-A2-A0CR-01 19 10394723 10394723 C T ICAM1 Missense_Mutation p.P218S 0.18 tolerated(0.78) benign(0.082) TCGA-A2-A0CR-01 19 11597838 11597838 G A ZNF653 Missense_Mutation p.S436L 0.11 tolerated(0.05) possibly_damaging(0.655) TCGA-A2-A0CR-01 19 13184233 13184233 C T NFIX Intron 0.10 TCGA-A2-A0CR-01 19 14875317 14875317 C T EMR2 Missense_Mutation p.E338K 0.13 deleterious(0) probably_damaging(0.987) TCGA-A2-A0CR-01 19 15338377 15338377 G A EPHX3 Silent p.I318I 0.11 TCGA-A2-A0CR-01 19 15563552 15563552 C T RASAL3 Silent p.L915L 0.20 TCGA-A2-A0CR-01 19 16620688 16620688 C T C19orf44 Missense_Mutation p.P510S 0.14 tolerated(0.16) benign(0.026) TCGA-A2-A0CR-01 19 2039480 2039480 C T MKNK2 3'UTR 0.27 TCGA-A2-A0CR-01 19 373480 373480 G A THEG Silent p.I185I 0.11 TCGA-A2-A0CR-01 19 37862089 37862089 C T ZNF527 5'UTR 0.13 TCGA-A2-A0CR-01 19 46347318 46347318 C T SYMPK Missense_Mutation p.E273K 0.15 tolerated(0.5) benign(0.041) TCGA-A2-A0CR-01 19 46417616 46417616 C T NANOS2 Silent p.K112K 0.08 TCGA-A2-A0CR-01 19 51297066 51297066 G C ACPT Silent p.L257L 0.16 TCGA-A2-A0CR-01 19 59057200 59057200 G A TRIM28 Missense_Mutation p.E175K 0.19 deleterious(0.04) possibly_damaging(0.849) TCGA-A2-A0CR-01 19 9059907 9059907 G A MUC16 Missense_Mutation p.S9180L 0.14 unknown(0) TCGA-A2-A0CR-01 1 10318573 10318573 C T KIF1B Missense_Mutation p.S69F 0.25 deleterious(0) probably_damaging(0.95) TCGA-A2-A0CR-01 1 10703221 10703221 G A CASZ1 Missense_Mutation p.S1339F 0.29 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-A2-A0CR-01 1 115537679 115537679 G A SYCP1 3'UTR 0.12 TCGA-A2-A0CR-01 1 145557076 145557076 C G ANKRD35 Missense_Mutation p.I96M 0.19 deleterious(0.02) benign(0.081) TCGA-A2-A0CR-01 1 152283647 152283647 C T FLG Missense_Mutation p.E1239K 0.16 possibly_damaging(0.621) TCGA-A2-A0CR-01 1 152287821 152287821 C G FLG Missense_Mutation p.E38Q 0.18 possibly_damaging(0.902) TCGA-A2-A0CR-01 1 156563558 156563558 G A APOA1BP Intron 0.15 TCGA-A2-A0CR-01 1 158592794 158592794 C G SPTA1 Missense_Mutation p.E2033D 0.13 deleterious(0.04) possibly_damaging(0.747) TCGA-A2-A0CR-01 1 1599845 1599845 G C SLC35E2B Missense_Mutation p.L301V 0.12 tolerated(0.15) benign(0.036) TCGA-A2-A0CR-01 1 186277142 186277142 A G PRG4 Missense_Mutation p.E764G 0.19 unknown(0) TCGA-A2-A0CR-01 1 186277144 186277144 C A PRG4 Missense_Mutation p.P765T 0.19 unknown(0) TCGA-A2-A0CR-01 1 19484363 19484363 G C UBR4 Silent p.L1902L 0.12 TCGA-A2-A0CR-01 1 196801041 196801041 G A CFHR1 Missense_Mutation p.R302Q 0.08 tolerated(0.3) benign(0.236) TCGA-A2-A0CR-01 1 205739862 205739862 T G RAB7L1 Silent p.R167R 0.15 TCGA-A2-A0CR-01 1 223568461 223568461 G A C1orf65 Silent p.L548L 0.19 TCGA-A2-A0CR-01 1 225586837 225586837 G A LBR 3'Flank 0.15 TCGA-A2-A0CR-01 1 234586185 234586185 G C TARBP1 Missense_Mutation p.S617C 0.15 deleterious(0) possibly_damaging(0.619) TCGA-A2-A0CR-01 1 235922444 235922444 G A LYST Nonsense_Mutation p.Q2237* 0.14 TCGA-A2-A0CR-01 1 246729197 246729197 C T TFB2M Missense_Mutation p.E82K 0.09 tolerated(0.45) benign(0.065) TCGA-A2-A0CR-01 1 27057727 27057727 C T ARID1A Nonsense_Mutation p.Q479* 0.13 TCGA-A2-A0CR-01 1 40960990 40960990 C T ZFP69 Silent p.F280F 0.11 TCGA-A2-A0CR-01 1 41540970 41540970 G A SCMH1 Missense_Mutation p.S290F 0.11 deleterious(0.05) benign(0.158) TCGA-A2-A0CR-01 1 65210970 65210970 G A RAVER2 Missense_Mutation p.E39K 0.21 tolerated(0.61) benign(0.011) TCGA-A2-A0CR-01 21 27284261 27284261 C G APP Missense_Mutation p.Q567H 0.14 tolerated(0.1) probably_damaging(0.945) TCGA-A2-A0CR-01 21 30365148 30365148 C G LTN1 Missense_Mutation p.Q39H 0.20 tolerated_low_confidence(0.07) benign(0) TCGA-A2-A0CR-01 21 46067169 46067169 C G KRTAP10-11 Missense_Mutation p.S265C 0.09 deleterious(0) benign(0.11) TCGA-A2-A0CR-01 21 47412129 47412129 G C COL6A1 Missense_Mutation p.E412Q 0.10 tolerated(0.05) unknown(0) TCGA-A2-A0CR-01 22 31608289 31608289 C T LIMK2 5'UTR 0.09 TCGA-A2-A0CR-01 22 44681447 44681447 G A KIAA1644 Missense_Mutation p.R154W 0.19 deleterious(0) benign(0.432) TCGA-A2-A0CR-01 2 101188257 101188257 G C PDCL3 Missense_Mutation p.D192H 0.11 deleterious(0) possibly_damaging(0.792) TCGA-A2-A0CR-01 2 122520632 122520632 C G TSN Nonsense_Mutation p.S142* 0.12 TCGA-A2-A0CR-01 2 136873764 136873764 C T CXCR4 5'UTR 0.23 TCGA-A2-A0CR-01 2 150017281 150017281 G A LYPD6B Silent p.L3L 0.09 TCGA-A2-A0CR-01 2 152348667 152348667 C T NEB Silent p.R8334R 0.08 TCGA-A2-A0CR-01 2 172953413 172953413 C T DLX1 3'UTR 0.10 TCGA-A2-A0CR-01 2 21224748 21224748 C T APOB Missense_Mutation p.E4516K 0.12 benign(0.081) TCGA-A2-A0CR-01 2 219221900 219221900 C G C2orf62 Silent p.L36L 0.10 TCGA-A2-A0CR-01 2 220356518 220356518 C G SPEG Missense_Mutation p.P3130A 0.11 possibly_damaging(0.559) TCGA-A2-A0CR-01 2 228012295 228012295 C G COL4A4 5'UTR 0.21 TCGA-A2-A0CR-01 2 234681046 234681046 C T UGT1A4 Silent p.L482L 0.14 TCGA-A2-A0CR-01 2 234775050 234775050 C T MSL3P1 RNA 0.15 TCGA-A2-A0CR-01 2 24205779 24205779 G A UBXN2A Missense_Mutation p.E101K 0.12 deleterious(0.01) probably_damaging(0.934) TCGA-A2-A0CR-01 2 25377247 25377247 G C EFR3B 3'UTR 0.14 TCGA-A2-A0CR-01 2 279771 279771 G A FAM150B 3'UTR 0.12 TCGA-A2-A0CR-01 2 56093897 56093897 G A EFEMP1 3'UTR 0.13 TCGA-A2-A0CR-01 2 70191420 70191420 G A ASPRV1 5'Flank 0.09 TCGA-A2-A0CR-01 2 73429814 73429814 G A NOTO Missense_Mutation p.R7Q 0.26 tolerated_low_confidence(0.36) unknown(0) TCGA-A2-A0CR-01 3 101384177 101384177 G A ZBTB11 Silent p.N418N 0.07 TCGA-A2-A0CR-01 3 12856719 12856719 G C CAND2 Missense_Mutation p.L362F 0.16 deleterious(0.01) possibly_damaging(0.691) TCGA-A2-A0CR-01 3 12856792 12856792 G C CAND2 Missense_Mutation p.E387Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CR-01 3 135869477 135869477 C T MSL2 3'UTR 0.19 TCGA-A2-A0CR-01 3 14106084 14106084 T C TPRXL Silent p.S136S 0.21 TCGA-A2-A0CR-01 3 14106195 14106195 T C TPRXL Silent p.S173S 0.25 TCGA-A2-A0CR-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-A2-A0CR-01 3 179448005 179448005 G C USP13 Missense_Mutation p.D373H 0.14 deleterious(0.01) benign(0.126) TCGA-A2-A0CR-01 3 27472924 27472924 G A SLC4A7 Nonsense_Mutation p.Q330* 0.12 TCGA-A2-A0CR-01 3 29529937 29529937 G T RBMS3 Missense_Mutation p.G85V 0.18 deleterious(0) probably_damaging(1) TCGA-A2-A0CR-01 3 31658466 31658466 G A STT3B Missense_Mutation p.R341K 0.09 tolerated(0.53) benign(0.004) TCGA-A2-A0CR-01 3 46939404 46939404 G C PTH1R Missense_Mutation p.E125Q 0.11 tolerated(0.86) benign(0.06) TCGA-A2-A0CR-01 3 57817203 57817203 C G SLMAP Missense_Mutation p.L98V 0.16 tolerated(0.1) benign(0.096) TCGA-A2-A0CR-01 3 9478547 9478547 G A SETD5 Intron 0.09 TCGA-A2-A0CR-01 4 120463616 120463616 C G PDE5A Missense_Mutation p.E524Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CR-01 4 123207735 123207735 G C KIAA1109 Missense_Mutation p.R3026T 0.09 benign(0.043) TCGA-A2-A0CR-01 4 41946820 41946820 C T TMEM33 Missense_Mutation p.S136L 0.17 tolerated(0.2) benign(0.001) TCGA-A2-A0CR-01 4 41946834 41946834 C A TMEM33 Missense_Mutation p.L141M 0.16 tolerated(0.27) possibly_damaging(0.453) TCGA-A2-A0CR-01 4 517361 517361 G C PIGG Missense_Mutation p.Q576H 0.09 deleterious(0) probably_damaging(0.95) TCGA-A2-A0CR-01 4 70152547 70152547 G A UGT2B28 Missense_Mutation p.M316I 0.11 tolerated(0.19) benign(0.004) TCGA-A2-A0CR-01 4 88415285 88415285 C G SPARCL1 Missense_Mutation p.E223Q 0.15 deleterious(0.04) possibly_damaging(0.886) TCGA-A2-A0CR-01 5 122950819 122950819 T G CSNK1G3 3'UTR 0.16 TCGA-A2-A0CR-01 5 126776493 126776493 G A MEGF10 Missense_Mutation p.D766N 0.10 tolerated(0.06) benign(0.246) TCGA-A2-A0CR-01 5 140871163 140871163 G A PCDHGC5 Missense_Mutation p.D786N 0.16 deleterious(0.02) benign(0.255) TCGA-A2-A0CR-01 5 150867671 150867671 G C SLC36A1 Missense_Mutation p.M429I 0.18 tolerated(0.23) benign(0.007) TCGA-A2-A0CR-01 5 170876186 170876186 C G FGF18 Missense_Mutation p.Q96E 0.09 tolerated(0.06) benign(0.004) TCGA-A2-A0CR-01 5 176931354 176931354 T C DOK3 Missense_Mutation p.N374S 0.17 tolerated(0.61) benign(0) TCGA-A2-A0CR-01 5 180056359 180056359 C T FLT4 Silent p.L295L 0.10 TCGA-A2-A0CR-01 5 32229873 32229873 C G MTMR12 3'UTR 0.08 TCGA-A2-A0CR-01 5 41921311 41921311 G A C5orf51 3'UTR 0.11 TCGA-A2-A0CR-01 5 6604332 6604332 C T NSUN2 Missense_Mutation p.D626N 0.07 deleterious(0) probably_damaging(1) TCGA-A2-A0CR-01 6 10764642 10764642 G A MAK 3'UTR 0.20 TCGA-A2-A0CR-01 6 117718277 117718277 G A ROS1 Missense_Mutation p.P194S 0.16 deleterious(0) probably_damaging(0.969) TCGA-A2-A0CR-01 6 24559335 24559335 G C KIAA0319 Silent p.L880L 0.15 TCGA-A2-A0CR-01 6 27368161 27368161 C T ZNF391 Silent p.L4L 0.12 TCGA-A2-A0CR-01 6 32053662 32053662 C T TNXB Missense_Mutation p.E1005K 0.08 probably_damaging(0.986) TCGA-A2-A0CR-01 6 43227338 43227338 G A TTBK1 Missense_Mutation p.D440N 0.12 possibly_damaging(0.653) TCGA-A2-A0CR-01 6 44371709 44371709 C G CDC5L Missense_Mutation p.L235V 0.20 tolerated(0.55) benign(0.039) TCGA-A2-A0CR-01 6 56496688 56496688 T A DST Missense_Mutation p.E782V 0.07 possibly_damaging(0.877) TCGA-A2-A0CR-01 6 56496689 56496689 C G DST Missense_Mutation p.E782Q 0.07 benign(0.17) TCGA-A2-A0CR-01 7 138793819 138793819 G C ZC3HAV1 Missense_Mutation p.L87V 0.07 deleterious(0.03) possibly_damaging(0.899) TCGA-A2-A0CR-01 7 149171281 149171281 G A ZNF746 3'UTR 0.12 TCGA-A2-A0CR-01 7 158828640 158828640 C T VIPR2 Intron 0.12 TCGA-A2-A0CR-01 7 19185139 19185139 C A FERD3L 5'Flank 0.23 TCGA-A2-A0CR-01 7 27824779 27824779 C T TAX1BP1 Intron 0.11 TCGA-A2-A0CR-01 7 43484002 43484002 G C HECW1 Missense_Mutation p.E411Q 0.19 tolerated_low_confidence(0.24) benign(0.013) TCGA-A2-A0CR-01 7 70886041 70886041 C G WBSCR17 Missense_Mutation p.I304M 0.08 tolerated(0.25) probably_damaging(0.996) TCGA-A2-A0CR-01 7 95661999 95661999 T A DYNC1I1 Missense_Mutation p.N396K 0.12 tolerated(0.23) probably_damaging(0.995) TCGA-A2-A0CR-01 7 99668418 99668418 G A ZNF3 3'UTR 0.15 TCGA-A2-A0CR-01 7 99751586 99751586 G A LAMTOR4 Silent p.%3D 0.07 TCGA-A2-A0CR-01 8 139712383 139712383 G A COL22A1 Missense_Mutation p.S855F 0.22 probably_damaging(0.994) TCGA-A2-A0CR-01 8 145154965 145154965 C G SHARPIN Missense_Mutation p.K128N 0.16 tolerated(0.58) benign(0) TCGA-A2-A0CR-01 8 146203008 146203008 A T ZNF252P RNA 0.14 TCGA-A2-A0CR-01 8 146277859 146277859 C G C8orf33 5'UTR 0.10 TCGA-A2-A0CR-01 8 24348333 24348333 G T ADAM7 Missense_Mutation p.D430Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-A2-A0CR-01 8 70571745 70571745 G C SULF1 3'UTR 0.08 TCGA-A2-A0CR-01 8 70588895 70588895 C T SLCO5A1 Missense_Mutation p.E680K 0.16 deleterious(0.02) benign(0.101) TCGA-A2-A0CR-01 8 9413850 9413850 C T TNKS Missense_Mutation p.S134F 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-A2-A0CR-01 9 108425189 108425189 C A TAL2 3'UTR 0.09 TCGA-A2-A0CR-01 9 108456870 108456870 C A TMEM38B 5'UTR 0.17 TCGA-A2-A0CR-01 9 114454565 114454565 G A C9orf84 Missense_Mutation p.S1167F 0.20 tolerated(0.2) possibly_damaging(0.502) TCGA-A2-A0CR-01 9 123912453 123912453 G A CNTRL Missense_Mutation p.D1219N 0.17 possibly_damaging(0.468) TCGA-A2-A0CR-01 9 138556012 138556012 C T LCN9 Missense_Mutation p.S34L 0.08 deleterious(0.03) probably_damaging(0.978) TCGA-A2-A0CR-01 9 39133065 39133065 G A CNTNAP3 Silent p.S648S 0.25 TCGA-A2-A0CR-01 9 78973680 78973680 G C PCSK5 Missense_Mutation p.E1809Q 0.20 tolerated(0.06) probably_damaging(0.981) TCGA-A2-A0CR-01 9 79117450 79117450 G A GCNT1 Silent p.E51E 0.13 TCGA-A2-A0CR-01 X 102962273 102962273 C T GLRA4 Silent p.%3D 0.10 TCGA-A2-A0CR-01 X 123234928 123234928 C G STAG2 3'UTR 0.12 TCGA-A2-A0CR-01 X 12736252 12736252 G A FRMPD4 Missense_Mutation p.E1103K 0.14 deleterious_low_confidence(0) benign(0.26) TCGA-A2-A0CR-01 X 128580908 128580908 G C SMARCA1 3'UTR 0.23 TCGA-A2-A0CR-01 X 13732502 13732502 C T TRAPPC2 3'UTR 0.10 TCGA-A2-A0CR-01 X 142716367 142716367 C T SLITRK4 3'UTR 0.11 TCGA-A2-A0CR-01 X 48887846 48887846 G A TFE3 Silent p.F517F 0.14 TCGA-A2-A0CR-01 X 57934648 57934648 G A ZXDA Missense_Mutation p.S736L 0.07 deleterious(0) possibly_damaging(0.544) TCGA-A2-A0CR-01 X 74290226 74290226 G A ABCB7 Silent p.L448L 0.09 TCGA-A2-A0CR-01 X 77245317 77245317 C T ATP7A Missense_Mutation p.S400L 0.21 deleterious(0.03) benign(0.032) TCGA-A2-A0CR-01 X 78216104 78216104 T A P2RY10 Missense_Mutation p.N29K 0.10 tolerated(0.14) benign(0.007) TCGA-A2-A0CS-01 10 101190347 101190347 T C GOT1 5'UTR 0.34 TCGA-A2-A0CS-01 10 17865111 17865111 C T MRC1L1 Missense_Mutation p.R34C 0.28 probably_damaging(0.96) TCGA-A2-A0CS-01 10 871788 871788 C A LARP4B Missense_Mutation p.G383V 0.55 deleterious(0.01) benign(0.356) TCGA-A2-A0CS-01 10 89693002 89693003 - A PTEN Frame_Shift_Ins p.V166Sfs*14 0.38 TCGA-A2-A0CS-01 11 55419253 55419253 G T OR4S2 Missense_Mutation p.V292L 0.37 deleterious(0) benign(0.063) TCGA-A2-A0CS-01 11 61404548 61404548 G A RPLP0P2 RNA 0.30 TCGA-A2-A0CS-01 11 6891161 6891161 G T OR10A2 Missense_Mutation p.G59V 0.16 deleterious(0.01) benign(0.126) TCGA-A2-A0CS-01 12 12871146 12871147 - C CDKN1B Frame_Shift_Ins p.E126* 0.41 TCGA-A2-A0CS-01 12 129467539 129467539 C T GLT1D1 Silent p.N235N 0.16 TCGA-A2-A0CS-01 12 3600687 3600687 T G PRMT8 5'UTR 0.32 TCGA-A2-A0CS-01 12 48141337 48141337 G A RAPGEF3 Nonsense_Mutation p.R516* 0.23 TCGA-A2-A0CS-01 12 88496844 88496844 C T CEP290 Intron 0.37 TCGA-A2-A0CS-01 14 101200651 101200651 C T DLK1 Silent p.G190G 0.33 TCGA-A2-A0CS-01 14 35873014 35873015 AG - NFKBIA Intron 0.24 TCGA-A2-A0CS-01 14 96797849 96797849 T C ATG2B Missense_Mutation p.N532D 0.16 tolerated(0.42) benign(0.016) TCGA-A2-A0CS-01 15 75651980 75651980 C T MAN2C1 Silent p.P643P 0.50 TCGA-A2-A0CS-01 16 2834663 2834663 C G PRSS33 Missense_Mutation p.Q275H 0.31 tolerated(0.44) benign(0.033) TCGA-A2-A0CS-01 17 10404694 10404694 G A MYH1 Silent p.A1157A 0.31 TCGA-A2-A0CS-01 17 18638608 18638608 C T TRIM16L Silent p.G294G 0.29 TCGA-A2-A0CS-01 17 39633898 39633898 G T KRT35 Silent p.A364A 0.34 TCGA-A2-A0CS-01 17 7346546 7346546 A C FGF11 3'UTR 0.22 TCGA-A2-A0CS-01 17 73564739 73564745 GCCGGCA - LLGL2 Frame_Shift_Del p.S409Rfs*18 0.18 TCGA-A2-A0CS-01 19 10625096 10625096 C T S1PR5 Missense_Mutation p.V198M 0.44 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CS-01 19 2254442 2254442 A T JSRP1 Splice_Site p.X49_splice 0.29 TCGA-A2-A0CS-01 1 12445347 12445347 G A VPS13D Missense_Mutation p.S3800N 0.26 benign(0) TCGA-A2-A0CS-01 1 154193011 154193011 C T C1orf43 5'UTR 0.60 TCGA-A2-A0CS-01 1 167024281 167024281 G T GPA33 Silent p.G253G 0.12 TCGA-A2-A0CS-01 1 171236862 171236862 C A FMO1 Missense_Mutation p.Q105K 0.14 tolerated(0.25) benign(0.04) TCGA-A2-A0CS-01 1 179079801 179079801 T G ABL2 Intron 0.25 TCGA-A2-A0CS-01 1 214557597 214557597 G A PTPN14 Missense_Mutation p.S534L 0.14 tolerated(0.69) probably_damaging(0.996) TCGA-A2-A0CS-01 20 16486798 16486798 C T KIF16B Missense_Mutation p.S246N 0.35 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CS-01 20 47989458 47989458 T G KCNB1 3'UTR 0.49 TCGA-A2-A0CS-01 22 18300099 18300099 C T MICAL3 Silent p.R1776R 0.22 TCGA-A2-A0CS-01 2 11752468 11752468 T G GREB1 Intron 0.31 TCGA-A2-A0CS-01 2 15307121 15307121 C T NBAS 3'UTR 0.41 TCGA-A2-A0CS-01 2 203242213 203242213 C T BMPR2 Nonsense_Mutation p.Q6* 0.25 TCGA-A2-A0CS-01 2 31751158 31751158 T G AL133247.2 5'Flank 0.17 TCGA-A2-A0CS-01 3 142681729 142681729 G A PAQR9 Silent p.R150R 0.10 TCGA-A2-A0CS-01 3 176752091 176752091 T C TBL1XR1 Missense_Mutation p.N382S 0.17 tolerated(0.66) benign(0.002) TCGA-A2-A0CS-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.14 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A0CS-01 4 100341731 100341731 C T ADH7 Missense_Mutation p.V282M 0.18 deleterious(0.03) benign(0.303) TCGA-A2-A0CS-01 5 178556987 178556987 G A ADAMTS2 Silent p.D801D 0.12 TCGA-A2-A0CS-01 5 90086905 90086905 T C GPR98 Silent p.S4753S 0.16 TCGA-A2-A0CS-01 6 133015262 133015262 T C VNN1 Missense_Mutation p.Y134C 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A0CS-01 6 37612289 37612290 TA - MDGA1 Frame_Shift_Del p.I795Kfs*5 0.23 TCGA-A2-A0CS-01 6 51637584 51637584 A T PKHD1 Missense_Mutation p.V2853D 0.42 deleterious(0) probably_damaging(0.995) TCGA-A2-A0CS-01 6 87865327 87865327 C T ZNF292 Silent p.A6A 0.23 TCGA-A2-A0CS-01 7 122635049 122635049 G A TAS2R16 Missense_Mutation p.H214Y 0.18 tolerated(1) benign(0.067) TCGA-A2-A0CS-01 7 151851131 151851132 - A KMT2C Frame_Shift_Ins p.S4081Ifs*12 0.25 TCGA-A2-A0CS-01 7 29546980 29546983 AAGT - CHN2 Splice_Site p.X377_splice 0.08 TCGA-A2-A0CS-01 8 132998454 132998454 G - EFR3A Frame_Shift_Del p.R628Qfs*24 0.21 TCGA-A2-A0CS-01 8 81412499 81412499 A - ZBTB10 Frame_Shift_Del p.R583Dfs*14 0.17 TCGA-A2-A0CS-01 9 27949369 27949369 G T LINGO2 Missense_Mutation p.A434E 0.15 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CS-01 9 93375893 93375893 G A DIRAS2 Missense_Mutation p.R73W 0.26 deleterious(0) probably_damaging(1) TCGA-A2-A0CS-01 X 152807217 152807217 G T ATP2B3 Missense_Mutation p.C166F 0.14 deleterious(0) probably_damaging(0.949) TCGA-A2-A0CS-01 X 49370671 49370671 T C GAGE1 3'UTR 0.29 TCGA-A2-A0CS-01 X 54161503 54161503 T A FAM120C Silent p.P459P 0.16 TCGA-A2-A0CV-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.36 TCGA-A2-A0CV-01 11 62295540 62295540 T C AHNAK Missense_Mutation p.I2117V 0.16 benign(0.03) TCGA-A2-A0CV-01 12 129569107 129569107 G A TMEM132D Silent p.I528I 0.17 TCGA-A2-A0CV-01 12 49666122 49666122 G T TUBA1C Missense_Mutation p.M154I 0.17 deleterious_low_confidence(0.03) benign(0.021) TCGA-A2-A0CV-01 14 45431733 45431733 C T FAM179B Nonsense_Mutation p.R37* 0.22 TCGA-A2-A0CV-01 15 90347575 90347575 C T ANPEP Missense_Mutation p.R363Q 0.28 tolerated(0.13) possibly_damaging(0.889) TCGA-A2-A0CV-01 16 22143005 22143005 G A VWA3A Silent p.S609S 0.18 TCGA-A2-A0CV-01 19 47588417 47588417 G A ZC3H4 Nonsense_Mutation p.R335* 0.15 TCGA-A2-A0CV-01 19 55690340 55690340 G A SYT5 Missense_Mutation p.H24Y 0.14 tolerated(0.11) benign(0.105) TCGA-A2-A0CV-01 1 229683401 229683401 G C ABCB10 Missense_Mutation p.L256V 0.14 tolerated(0.09) possibly_damaging(0.498) TCGA-A2-A0CV-01 1 87549897 87549897 A G HS2ST1 Missense_Mutation p.I128M 0.14 tolerated(0.11) possibly_damaging(0.472) TCGA-A2-A0CV-01 20 31996318 31996318 C A SNTA1 Missense_Mutation p.A505S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A0CV-01 22 51008742 51008742 C T CPT1B Missense_Mutation p.A708T 0.27 tolerated(0.09) benign(0.045) TCGA-A2-A0CV-01 2 197183859 197183859 G A HECW2 Silent p.S585S 0.26 TCGA-A2-A0CV-01 3 121415242 121415242 C A GOLGB1 Missense_Mutation p.Q1376H 0.18 possibly_damaging(0.694) TCGA-A2-A0CV-01 3 78719385 78719385 C G ROBO1 Missense_Mutation p.G470A 0.16 tolerated(0.3) probably_damaging(0.999) TCGA-A2-A0CV-01 4 151223818 151223818 T C LRBA Missense_Mutation p.Y2670C 0.16 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CV-01 5 140256806 140256806 G A PCDHA12 Silent p.R583R 0.19 TCGA-A2-A0CV-01 5 79032395 79032395 G A CMYA5 Missense_Mutation p.A2603T 0.13 benign(0) TCGA-A2-A0CV-01 6 72926802 72926802 T A RIMS1 Intron 0.19 TCGA-A2-A0CV-01 6 80746264 80746264 G A TTK Missense_Mutation p.G666E 0.16 deleterious(0) probably_damaging(1) TCGA-A2-A0CV-01 7 299785 299785 G C FAM20C Missense_Mutation p.D532H 0.26 deleterious(0) possibly_damaging(0.803) TCGA-A2-A0CV-01 8 141561427 141561427 G A AGO2 Missense_Mutation p.R460C 0.16 deleterious(0) possibly_damaging(0.448) TCGA-A2-A0CV-01 9 139266359 139266359 T C CARD9 Missense_Mutation p.K58E 0.12 tolerated(0.23) possibly_damaging(0.794) TCGA-A2-A0CV-01 9 36217480 36217480 C T GNE Missense_Mutation p.R715H 0.16 deleterious_low_confidence(0.02) benign(0.001) TCGA-A2-A0CW-01 10 51465579 51465579 A G AGAP7 Missense_Mutation p.Y293H 0.40 tolerated(1) benign(0.006) TCGA-A2-A0CW-01 10 75480346 75480346 C A RP11-574K11.28 RNA 0.34 TCGA-A2-A0CW-01 11 289917 289917 G A ATHL1 Missense_Mutation p.R34Q 0.29 tolerated(0.07) probably_damaging(0.942) TCGA-A2-A0CW-01 11 640571 640571 G A DRD4 Missense_Mutation p.V410I 0.45 tolerated(0.17) possibly_damaging(0.811) TCGA-A2-A0CW-01 11 68453068 68453068 G A GAL Missense_Mutation p.E30K 0.17 deleterious(0) benign(0.141) TCGA-A2-A0CW-01 11 6913663 6913663 G A OR2D2 Silent p.T23T 0.32 TCGA-A2-A0CW-01 12 352926 352926 A T SLC6A13 Missense_Mutation p.F86I 0.32 deleterious(0) possibly_damaging(0.898) TCGA-A2-A0CW-01 12 41946516 41946516 G A PDZRN4 Missense_Mutation p.R421Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CW-01 12 51457800 51457800 A G CSRNP2 Missense_Mutation p.L454P 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-A2-A0CW-01 12 7053746 7053746 G A C12orf57 Missense_Mutation p.V54M 0.34 deleterious(0.04) benign(0.428) TCGA-A2-A0CW-01 13 52034839 52034839 G T RPS4XP16 RNA 0.73 TCGA-A2-A0CW-01 14 22783350 22783350 G A TRAV40 Silent p.%3D 0.72 TCGA-A2-A0CW-01 14 55848753 55848753 A C ATG14 Missense_Mutation p.I268M 0.05 deleterious_low_confidence(0.04) probably_damaging(0.961) TCGA-A2-A0CW-01 15 42676682 42676682 A G CAPN3 Missense_Mutation p.E104G 0.05 deleterious(0) probably_damaging(1) TCGA-A2-A0CW-01 15 81229087 81229087 C G KIAA1199 Missense_Mutation p.L1028V 0.38 tolerated(0.11) possibly_damaging(0.694) TCGA-A2-A0CW-01 16 58589801 58589801 G A CNOT1 Nonsense_Mutation p.Q831* 0.36 TCGA-A2-A0CW-01 16 66803899 66803899 G T CCDC79 Missense_Mutation p.T529N 0.15 deleterious(0.02) benign(0.101) TCGA-A2-A0CW-01 16 69971470 69971470 A T WWP2 Missense_Mutation p.Q753L 0.37 deleterious(0) probably_damaging(0.985) TCGA-A2-A0CW-01 16 71893986 71893986 C G ZNF821 Missense_Mutation p.E392Q 0.28 tolerated_low_confidence(0.05) possibly_damaging(0.608) TCGA-A2-A0CW-01 17 31087405 31087405 A T MYO1D Missense_Mutation p.I400N 0.42 deleterious(0) probably_damaging(0.993) TCGA-A2-A0CW-01 17 37681111 37681111 G T CDK12 Missense_Mutation p.V1094L 0.49 benign(0.05) TCGA-A2-A0CW-01 17 40856673 40856673 C G EZH1 Missense_Mutation p.R655P 0.51 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CW-01 17 42397987 42397987 C T SLC25A39 Intron 0.23 TCGA-A2-A0CW-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.53 TCGA-A2-A0CW-01 17 78360175 78360175 C T RNF213 Missense_Mutation p.R4889C 0.40 possibly_damaging(0.54) TCGA-A2-A0CW-01 17 79880760 79880760 C T MAFG Silent p.V70V 0.28 TCGA-A2-A0CW-01 17 8702017 8702017 G C MFSD6L Missense_Mutation p.P141R 0.56 tolerated(0.09) benign(0.015) TCGA-A2-A0CW-01 19 40029877 40029877 C T EID2 3'UTR 0.17 TCGA-A2-A0CW-01 19 41007865 41007865 C A SPTBN4 Silent p.I274I 0.15 TCGA-A2-A0CW-01 19 41007883 41007883 C G SPTBN4 Missense_Mutation p.F280L 0.13 deleterious(0.01) benign(0.437) TCGA-A2-A0CW-01 19 41007911 41007911 C G SPTBN4 Missense_Mutation p.L290V 0.12 tolerated(0.09) benign(0.177) TCGA-A2-A0CW-01 19 49303011 49303011 C T BCAT2 Missense_Mutation p.V206M 0.52 tolerated(0.09) benign(0.002) TCGA-A2-A0CW-01 19 50482398 50482398 G T VRK3 Missense_Mutation p.L460M 0.39 tolerated(0.41) benign(0.072) TCGA-A2-A0CW-01 19 52824933 52824933 G C ZNF480 Missense_Mutation p.D144H 0.36 tolerated(0.17) possibly_damaging(0.72) TCGA-A2-A0CW-01 19 52826181 52826181 C G ZNF480 3'UTR 0.46 TCGA-A2-A0CW-01 19 53571578 53571578 C T ZNF160 Missense_Mutation p.E737K 0.71 tolerated(0.06) benign(0.082) TCGA-A2-A0CW-01 19 53573463 53573463 A C ZNF160 Missense_Mutation p.S108R 0.74 deleterious(0.02) benign(0.004) TCGA-A2-A0CW-01 19 54313010 54313010 C A NLRP12 Missense_Mutation p.V635L 0.07 tolerated(0.27) possibly_damaging(0.556) TCGA-A2-A0CW-01 19 55753591 55753591 G T PPP6R1 Missense_Mutation p.S263Y 0.14 deleterious(0) probably_damaging(0.963) TCGA-A2-A0CW-01 19 55753788 55753788 G C PPP6R1 Silent p.V229V 0.10 TCGA-A2-A0CW-01 1 110148929 110148929 C - GNAT2 Splice_Site p.X197_splice 0.13 TCGA-A2-A0CW-01 1 149895759 149895759 C A SF3B4 Missense_Mutation p.R354L 0.31 deleterious(0.01) unknown(0) TCGA-A2-A0CW-01 1 161008416 161008416 G T TSTD1 Silent p.R20R 0.23 TCGA-A2-A0CW-01 1 216348792 216348792 C T USH2A Missense_Mutation p.G1477R 0.30 benign(0.072) TCGA-A2-A0CW-01 1 22211365 22211365 C T HSPG2 Missense_Mutation p.D468N 0.46 probably_damaging(0.917) TCGA-A2-A0CW-01 1 237711763 237711763 C A RYR2 Missense_Mutation p.P980H 0.27 probably_damaging(0.992) TCGA-A2-A0CW-01 1 243727150 243727150 A G AKT3 Silent p.L274L 0.19 TCGA-A2-A0CW-01 1 40961283 40961283 C T ZFP69 Missense_Mutation p.S378F 0.24 deleterious(0) probably_damaging(1) TCGA-A2-A0CW-01 20 42788508 42788508 C T JPH2 Missense_Mutation p.E307K 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-A2-A0CW-01 20 44596988 44596988 C T ZNF335 Silent p.V152V 0.18 TCGA-A2-A0CW-01 20 57290478 57290478 G A NPEPL1 3'UTR 0.20 TCGA-A2-A0CW-01 21 36252994 36252995 - C RUNX1 Frame_Shift_Ins p.D123Gfs*15 0.25 TCGA-A2-A0CW-01 21 40570751 40570751 C T BRWD1 Missense_Mutation p.G1864E 0.41 tolerated_low_confidence(1) benign(0.005) TCGA-A2-A0CW-01 21 40570851 40570851 C G BRWD1 Missense_Mutation p.D1831H 0.37 tolerated_low_confidence(0.05) possibly_damaging(0.695) TCGA-A2-A0CW-01 21 40571558 40571558 C G BRWD1 Missense_Mutation p.R1595T 0.42 tolerated(0.05) benign(0.253) TCGA-A2-A0CW-01 2 132054449 132054449 G A CYP4F31P 3'Flank 0.43 TCGA-A2-A0CW-01 2 170042184 170042184 C T LRP2 Missense_Mutation p.G3225E 0.34 probably_damaging(0.993) TCGA-A2-A0CW-01 2 211459326 211459326 T C CPS1 Missense_Mutation p.V426A 0.04 tolerated(0.45) benign(0.001) TCGA-A2-A0CW-01 2 55214629 55214629 G A RTN4 Silent p.F1073F 0.35 TCGA-A2-A0CW-01 2 74601651 74601651 C T DCTN1 Intron 0.52 TCGA-A2-A0CW-01 2 89265934 89265934 A C IGKV1-6 Silent p.P66P 0.40 TCGA-A2-A0CW-01 3 119133553 119133553 C T ARHGAP31 Missense_Mutation p.A926V 0.28 tolerated(1) benign(0) TCGA-A2-A0CW-01 3 178952090 178952090 G C PIK3CA Missense_Mutation p.G1049R 0.21 tolerated(0.09) possibly_damaging(0.487) TCGA-A2-A0CW-01 3 9990556 9990556 G A PRRT3 Missense_Mutation p.R353W 0.63 deleterious(0) probably_damaging(1) TCGA-A2-A0CW-01 4 54231342 54231342 G C SCFD2 Missense_Mutation p.A256G 0.42 deleterious(0) possibly_damaging(0.725) TCGA-A2-A0CW-01 4 7043543 7043543 C T CCDC96 Missense_Mutation p.V375M 0.15 deleterious(0) probably_damaging(0.992) TCGA-A2-A0CW-01 4 94377069 94377069 C T GRID2 Missense_Mutation p.T601M 0.41 tolerated(0.05) benign(0.109) TCGA-A2-A0CW-01 5 133481516 133481516 T A TCF7 Intron 0.33 TCGA-A2-A0CW-01 5 179731877 179731877 C A GFPT2 Silent p.G579G 0.40 TCGA-A2-A0CW-01 5 179731892 179731892 C A GFPT2 Silent p.G574G 0.37 TCGA-A2-A0CW-01 6 107076797 107076806 TAATCCTTCT - RTN4IP1 Frame_Shift_Del p.R31Vfs*14 0.26 TCGA-A2-A0CW-01 6 83877655 83877655 C G DOPEY1 Silent p.T2389T 0.40 TCGA-A2-A0CW-01 7 116778486 116778486 C T ST7 Intron 0.26 TCGA-A2-A0CW-01 7 99054135 99054135 G T CPSF4 3'UTR 0.36 TCGA-A2-A0CW-01 8 11970495 11970495 G A ZNF705D Missense_Mutation p.R244Q 0.25 deleterious(0.01) benign(0.001) TCGA-A2-A0CW-01 8 141566309 141566309 G C AGO2 Missense_Mutation p.T368S 0.23 tolerated(0.1) benign(0.203) TCGA-A2-A0CW-01 8 55540804 55540804 C A RP1 Missense_Mutation p.S1454R 0.42 deleterious(0) probably_damaging(0.999) TCGA-A2-A0CW-01 8 87241895 87241895 G A SLC7A13 Silent p.I204I 0.09 TCGA-A2-A0CW-01 8 87241919 87241919 A T SLC7A13 Silent p.A196A 0.10 TCGA-A2-A0CW-01 8 87242120 87242120 G A SLC7A13 Silent p.V129V 0.04 TCGA-A2-A0CW-01 8 87242363 87242363 G C SLC7A13 Silent p.V48V 0.07 TCGA-A2-A0CW-01 9 104357226 104357226 C T PPP3R2 5'UTR 0.25 TCGA-A2-A0CW-01 9 112705827 112705827 G A PALM2 3'Flank 0.26 TCGA-A2-A0CW-01 9 113192280 113192280 A C SVEP1 Silent p.V1845V 0.33 TCGA-A2-A0CW-01 9 15778997 15778998 TT - CCDC171 Frame_Shift_Del p.L977Rfs*29 0.27 TCGA-A2-A0CW-01 X 101382274 101382274 C A TCEAL2 Missense_Mutation p.H158N 0.25 deleterious(0.01) benign(0.322) TCGA-A2-A0CW-01 X 107979179 107979179 G A IRS4 Silent p.A132A 0.43 TCGA-A2-A0CW-01 X 54784623 54784627 AGCAG - ITIH6 Frame_Shift_Del p.S627Wfs*122 0.19 TCGA-A2-A0CW-01 X 83411145 83411145 C T RPS6KA6 Missense_Mutation p.E66K 0.41 deleterious(0.02) benign(0.128) TCGA-A2-A0D3-01 10 8111543 8111544 - T GATA3 Frame_Shift_Ins p.Y345Lfs*8 0.25 TCGA-A2-A0D3-01 11 125301239 125301239 C T PKNOX2 Missense_Mutation p.T457M 0.40 deleterious_low_confidence(0.02) benign(0.166) TCGA-A2-A0D3-01 11 128772497 128772497 G T C11orf45 Silent p.G131G 0.23 TCGA-A2-A0D3-01 11 130318913 130318913 C T ADAMTS15 Silent p.T15T 0.27 TCGA-A2-A0D3-01 11 64702634 64702634 T A GPHA2 Silent p.T39T 0.49 TCGA-A2-A0D3-01 12 19427873 19427873 G A PLEKHA5 Nonsense_Mutation p.W423* 0.07 TCGA-A2-A0D3-01 12 96409430 96409430 G A LTA4H Silent p.C330C 0.29 TCGA-A2-A0D3-01 16 28943874 28943874 C T CD19 Missense_Mutation p.P99L 0.17 tolerated(0.49) benign(0.006) TCGA-A2-A0D3-01 18 51820754 51820754 T G POLI Missense_Mutation p.Y714D 0.42 deleterious(0.04) possibly_damaging(0.786) TCGA-A2-A0D3-01 19 18004753 18004753 G A SLC5A5 3'UTR 0.11 TCGA-A2-A0D3-01 19 50204862 50204862 C A CPT1C Silent p.R222R 0.56 TCGA-A2-A0D3-01 19 50810349 50810349 C T MYH14 Missense_Mutation p.R1908W 0.37 deleterious(0) probably_damaging(0.978) TCGA-A2-A0D3-01 1 120458202 120458202 G A NOTCH2 Silent p.G2381G 0.39 TCGA-A2-A0D3-01 1 156811515 156811515 G A INSRR Missense_Mutation p.R1157C 0.06 deleterious(0) probably_damaging(1) TCGA-A2-A0D3-01 1 170955837 170955837 G T MROH9 Nonsense_Mutation p.E289* 0.18 TCGA-A2-A0D3-01 1 180047624 180047624 G T CEP350 Missense_Mutation p.V1932L 0.40 benign(0.001) TCGA-A2-A0D3-01 1 23697615 23697618 TTTC - C1orf213 3'UTR 0.43 TCGA-A2-A0D3-01 1 247588840 247588840 C T NLRP3 Nonsense_Mutation p.R699* 0.15 TCGA-A2-A0D3-01 1 29651722 29651722 G A PTPRU Missense_Mutation p.G1388S 0.39 deleterious(0) probably_damaging(1) TCGA-A2-A0D3-01 1 93163492 93163492 A G EVI5 Silent p.Y274Y 0.34 TCGA-A2-A0D3-01 22 26895384 26895384 C T TFIP11 Missense_Mutation p.D339N 0.29 tolerated(0.08) possibly_damaging(0.548) TCGA-A2-A0D3-01 2 219029099 219029099 C T CXCR1 Missense_Mutation p.R279H 0.41 tolerated(0.29) benign(0.035) TCGA-A2-A0D3-01 3 130113771 130113771 G A COL6A5 Missense_Mutation p.D1011N 0.06 deleterious(0) probably_damaging(1) TCGA-A2-A0D3-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.45 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A0D3-01 4 158262491 158262491 C T GRIA2 Silent p.N640N 0.37 TCGA-A2-A0D3-01 5 148756510 148756510 G A IL17B Missense_Mutation p.R34W 0.32 deleterious(0) possibly_damaging(0.591) TCGA-A2-A0D3-01 6 26205200 26205200 G A HIST1H4E 3'UTR 0.39 TCGA-A2-A0D3-01 6 70070787 70070787 C T BAI3 Nonsense_Mutation p.R1208* 0.41 TCGA-A2-A0D3-01 7 102960101 102960102 GA - DNAJC2 Frame_Shift_Del p.L399Hfs*21 0.28 TCGA-A2-A0D3-01 7 122768936 122768936 G A SLC13A1 Missense_Mutation p.P366S 0.38 deleterious(0) probably_damaging(1) TCGA-A2-A0D3-01 7 152012381 152012381 G - KMT2C Frame_Shift_Del p.L145* 0.25 TCGA-A2-A0D3-01 7 94293642 94293643 - T PEG10 Frame_Shift_Ins p.L259Ffs*48 0.45 TCGA-A2-A0D3-01 8 110588052 110588052 A C SYBU Missense_Mutation p.F359V 0.60 deleterious(0) probably_damaging(0.999) TCGA-A2-A0D3-01 8 20005189 20005189 C A SLC18A1 Missense_Mutation p.D419Y 0.20 deleterious(0) probably_damaging(1) TCGA-A2-A0D3-01 8 32613947 32613947 G A NRG1 Missense_Mutation p.R282H 0.26 tolerated(1) possibly_damaging(0.494) TCGA-A2-A0D3-01 9 33676517 33676517 C T PTENP1 RNA 0.30 TCGA-A2-A0D3-01 X 140985038 140985038 C A MAGEC3 Missense_Mutation p.F498L 0.11 tolerated(0.48) benign(0.262) TCGA-A2-A0EN-01 11 76900501 76900501 G A MYO7A Missense_Mutation p.E1206K 0.19 deleterious(0.02) possibly_damaging(0.475) TCGA-A2-A0EN-01 12 125834884 125834884 T A TMEM132B Silent p.T313T 0.21 TCGA-A2-A0EN-01 13 29933490 29933490 G A MTUS2 Silent p.L1009L 0.37 TCGA-A2-A0EN-01 13 53603067 53603067 C T OLFM4 Silent p.P32P 0.19 TCGA-A2-A0EN-01 14 22217808 22217808 A G TRAV5 Silent p.L53L 0.18 TCGA-A2-A0EN-01 14 64954287 64954287 G A ZBTB25 Missense_Mutation p.P221L 0.25 deleterious(0.01) benign(0.003) TCGA-A2-A0EN-01 16 68863554 68863554 A G CDH1 Intron 0.28 TCGA-A2-A0EN-01 17 10318470 10318470 A G MYH8 Silent p.G256G 0.29 TCGA-A2-A0EN-01 17 59560293 59560293 C T TBX4 Nonsense_Mutation p.R352* 0.17 TCGA-A2-A0EN-01 17 73106586 73106586 C T ARMC7 Silent p.L40L 0.16 TCGA-A2-A0EN-01 19 19387471 19387471 G A SUGP1 Missense_Mutation p.R642W 0.17 deleterious(0.02) unknown(0) TCGA-A2-A0EN-01 1 150201406 150201406 C T ANP32E Silent p.E164E 0.11 TCGA-A2-A0EN-01 1 16248819 16248820 TT - SPEN Frame_Shift_Del p.F609Lfs*2 0.17 TCGA-A2-A0EN-01 1 177898788 177898788 T C SEC16B 3'UTR 0.20 TCGA-A2-A0EN-01 1 232607134 232607134 G C SIPA1L2 Silent p.T742T 0.29 TCGA-A2-A0EN-01 1 238050144 238050144 C T ZP4 Missense_Mutation p.E256K 0.13 tolerated(0.09) probably_damaging(0.951) TCGA-A2-A0EN-01 1 3750452 3750452 G A CEP104 Missense_Mutation p.R545C 0.28 deleterious(0) probably_damaging(1) TCGA-A2-A0EN-01 1 70505012 70505012 G T LRRC7 Missense_Mutation p.V1131F 0.25 deleterious(0.04) possibly_damaging(0.556) TCGA-A2-A0EN-01 20 34302208 34302208 G T RBM39 Missense_Mutation p.A332D 0.19 tolerated(0.15) benign(0.005) TCGA-A2-A0EN-01 21 36252995 36252995 C - RUNX1 Frame_Shift_Del p.D123Mfs*10 0.16 TCGA-A2-A0EN-01 2 136561583 136561583 C T LCT Missense_Mutation p.G1527E 0.14 deleterious(0) probably_damaging(1) TCGA-A2-A0EN-01 2 179456460 179456460 G T TTN Missense_Mutation p.T20029N 0.19 TCGA-A2-A0EN-01 2 220100548 220100548 G A ANKZF1 Missense_Mutation p.R641H 0.12 tolerated(0.06) benign(0.009) TCGA-A2-A0EN-01 2 231937097 231937098 - A PSMD1 Frame_Shift_Ins p.T284Nfs*12 0.16 TCGA-A2-A0EN-01 2 32475353 32475353 G A NLRC4 Missense_Mutation p.P527L 0.23 tolerated(0.55) benign(0.01) TCGA-A2-A0EN-01 3 111439672 111439672 G A PLCXD2 Intron 0.21 TCGA-A2-A0EN-01 3 141292064 141292064 G T RASA2 Splice_Site p.X453_splice 0.20 TCGA-A2-A0EN-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.18 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A0EN-01 3 178952139 178952139 A T PIK3CA Missense_Mutation p.H1065L 0.23 tolerated_low_confidence(0.13) benign(0.009) TCGA-A2-A0EN-01 3 195489057 195489057 C A MUC4 Missense_Mutation p.D4805Y 0.15 probably_damaging(0.993) TCGA-A2-A0EN-01 3 56700403 56700403 A T FAM208A Missense_Mutation p.Y303N 0.07 deleterious(0) probably_damaging(0.999) TCGA-A2-A0EN-01 5 137771453 137771453 C A KDM3B 3'UTR 0.18 TCGA-A2-A0EN-01 5 174156285 174156285 C T MSX2 Missense_Mutation p.S168F 0.21 deleterious(0) probably_damaging(0.999) TCGA-A2-A0EN-01 5 176728751 176728751 T C RAB24 Missense_Mutation p.H202R 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.777) TCGA-A2-A0EN-01 7 121756793 121756793 G A AASS Missense_Mutation p.T263M 0.17 deleterious(0) probably_damaging(0.999) TCGA-A2-A0EN-01 7 151859457 151859457 T - KMT2C Frame_Shift_Del p.K3735Nfs*10 0.14 TCGA-A2-A0EN-01 7 4827786 4827786 T A AP5Z1 Missense_Mutation p.S486T 0.14 tolerated(0.36) benign(0.033) TCGA-A2-A0EN-01 7 5327487 5327487 G A SLC29A4 Missense_Mutation p.V14M 0.13 tolerated_low_confidence(0.11) benign(0.007) TCGA-A2-A0EN-01 8 54142147 54142147 C T OPRK1 Missense_Mutation p.V285I 0.14 tolerated(0.68) benign(0.023) TCGA-A2-A0EN-01 X 22231059 22231059 G A PHEX Missense_Mutation p.G562R 0.19 deleterious(0.03) possibly_damaging(0.844) TCGA-A2-A0EN-01 X 34961961 34961961 C G FAM47B Missense_Mutation p.T338S 0.29 tolerated(0.18) probably_damaging(0.996) TCGA-A2-A0EN-01 X 70330750 70330750 T A IL2RG Missense_Mutation p.Y89F 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-A2-A0EN-01 X 9862709 9862709 C T SHROOM2 Missense_Mutation p.A254V 0.16 tolerated(0.54) possibly_damaging(0.739) TCGA-A2-A0EP-01 12 12875175 12875175 T C CDKN1B 3'UTR 0.08 TCGA-A2-A0EP-01 12 98849184 98849184 T C SLC9A7P1 RNA 0.04 TCGA-A2-A0EP-01 13 67799460 67799460 G A PCDH9 Intron 0.08 TCGA-A2-A0EP-01 14 106780535 106780535 G A IGHV4-28 Missense_Mutation p.T110M 0.06 deleterious(0.04) possibly_damaging(0.724) TCGA-A2-A0EP-01 15 34819667 34819667 C G GOLGA8B 3'UTR 0.06 TCGA-A2-A0EP-01 19 13322934 13322934 G T CACNA1A Missense_Mutation p.L2096I 0.12 possibly_damaging(0.567) TCGA-A2-A0EP-01 1 151510329 151510329 C T CGN 3'UTR 0.06 TCGA-A2-A0EP-01 1 156928866 156928866 C G ARHGEF11 Missense_Mutation p.E451Q 0.05 deleterious(0.01) benign(0.042) TCGA-A2-A0EP-01 1 168066241 168066241 G C GPR161 Missense_Mutation p.L222V 0.06 tolerated(0.7) benign(0.001) TCGA-A2-A0EP-01 20 37204097 37204097 C T RALGAPB 3'UTR 0.08 TCGA-A2-A0EP-01 2 137639789 137639789 G A THSD7B Nonsense_Mutation p.W14* 0.10 TCGA-A2-A0EP-01 2 208576780 208576780 G T CCNYL1 Missense_Mutation p.D54Y 0.50 deleterious(0.01) possibly_damaging(0.891) TCGA-A2-A0EP-01 2 98167808 98167808 T C ANKRD36B RNA 0.03 TCGA-A2-A0EP-01 6 166952228 166952228 C T RPS6KA2 Silent p.K56K 0.07 TCGA-A2-A0EP-01 8 10102700 10102700 A G MSRA Missense_Mutation p.T100A 0.08 deleterious(0) probably_damaging(0.999) TCGA-A2-A0EP-01 X 10203383 10203383 C T CLCN4 3'UTR 0.09 TCGA-A2-A0ES-01 10 127436551 127436551 C T EDRF1 Silent p.A1031A 0.07 TCGA-A2-A0ES-01 11 46894746 46894746 G A LRP4 Silent p.I1496I 0.05 TCGA-A2-A0ES-01 12 123687359 123687359 C T MPHOSPH9 Silent p.R379R 0.05 TCGA-A2-A0ES-01 12 27533205 27533205 C T ARNTL2 Missense_Mutation p.R118W 0.12 deleterious(0) probably_damaging(0.997) TCGA-A2-A0ES-01 14 24030522 24030522 C T AP1G2 Missense_Mutation p.C659Y 0.08 tolerated(0.13) benign(0.165) TCGA-A2-A0ES-01 17 30658837 30658837 T C C17orf75 Missense_Mutation p.N379S 0.07 tolerated(0.42) benign(0.003) TCGA-A2-A0ES-01 18 33718314 33718314 C T ELP2 Missense_Mutation p.P124S 0.04 tolerated(0.73) benign(0.027) TCGA-A2-A0ES-01 20 60318791 60318791 C T CDH4 Silent p.D114D 0.11 TCGA-A2-A0ES-01 22 32555038 32555038 A T C22orf42 Silent p.A55A 0.06 TCGA-A2-A0ES-01 2 48734427 48734427 G C PPP1R21 Missense_Mutation p.R663P 0.04 deleterious(0) probably_damaging(0.986) TCGA-A2-A0ES-01 3 130104186 130104186 C A COL6A5 Missense_Mutation p.R614S 0.06 tolerated(0.09) benign(0.051) TCGA-A2-A0ES-01 3 32995697 32995697 G A CCR4 Silent p.V261V 0.12 TCGA-A2-A0ES-01 4 16587611 16587611 G C LDB2 Silent p.V183V 0.04 TCGA-A2-A0ES-01 5 140800913 140800913 C A PCDHGA11 Missense_Mutation p.T40N 0.09 deleterious_low_confidence(0.02) benign(0.222) TCGA-A2-A0ES-01 6 38754658 38754658 A - DNAH8 Frame_Shift_Del p.D621Vfs*10 0.10 TCGA-A2-A0ES-01 6 63990201 63990201 C T LGSN Missense_Mutation p.V419M 0.05 tolerated(0.05) possibly_damaging(0.899) TCGA-A2-A0ES-01 6 74228775 74228776 - T EEF1A1 Nonsense_Mutation p.Y167* 0.08 TCGA-A2-A0ES-01 7 106829809 106829809 T C HBP1 Silent p.L280L 0.05 TCGA-A2-A0ES-01 7 150269705 150269705 G A GIMAP4 Missense_Mutation p.G183S 0.08 tolerated(0.54) benign(0.206) TCGA-A2-A0ES-01 8 87392964 87392964 C T WWP1 Missense_Mutation p.A27V 0.03 tolerated(0.11) possibly_damaging(0.865) TCGA-A2-A0ES-01 X 12904271 12904271 A G TLR7 Missense_Mutation p.N215S 0.10 tolerated(0.06) probably_damaging(0.988) TCGA-A2-A0EW-01 10 123845427 123845427 G A TACC2 Missense_Mutation p.A1138T 0.05 benign(0.093) TCGA-A2-A0EW-01 11 78204212 78204212 G C NARS2 Missense_Mutation p.P240R 0.13 deleterious(0) probably_damaging(0.995) TCGA-A2-A0EW-01 12 120156088 120156088 G A CIT Missense_Mutation p.P1377L 0.18 deleterious(0) benign(0.173) TCGA-A2-A0EW-01 15 22382595 22382595 A G OR4N4 Silent p.G41G 0.11 TCGA-A2-A0EW-01 15 77406488 77406488 C A PEAK1 3'UTR 0.22 TCGA-A2-A0EW-01 16 68844098 68844098 A G CDH1 Splice_Site p.X230_splice 0.26 TCGA-A2-A0EW-01 17 62463757 62463757 C T MILR1 3'UTR 0.20 TCGA-A2-A0EW-01 19 3653547 3653547 T C PIP5K1C Missense_Mutation p.Y221C 0.27 deleterious(0) probably_damaging(0.987) TCGA-A2-A0EW-01 19 44418767 44418767 T C ZNF45 Missense_Mutation p.K274R 0.20 deleterious(0.02) benign(0.021) TCGA-A2-A0EW-01 1 181726119 181726119 C T CACNA1E Missense_Mutation p.R1396C 0.18 deleterious(0) possibly_damaging(0.898) TCGA-A2-A0EW-01 2 179467306 179467306 G T TTN Missense_Mutation p.P18275T 0.23 TCGA-A2-A0EW-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-A2-A0EW-01 4 39117084 39117084 G A KLHL5 Intron 0.27 TCGA-A2-A0EW-01 5 39316041 39316041 T G C9 Missense_Mutation p.N236H 0.07 deleterious(0.03) benign(0.064) TCGA-A2-A0EW-01 6 129937374 129937374 G A ARHGAP18 Missense_Mutation p.P343S 0.19 deleterious(0.03) probably_damaging(0.982) TCGA-A2-A0EW-01 6 132270681 132270681 C T CTGF Missense_Mutation p.R258H 0.19 deleterious(0) probably_damaging(0.993) TCGA-A2-A0EW-01 7 139257730 139257730 G C HIPK2 Silent p.T1180T 0.23 TCGA-A2-A0EW-01 7 50605566 50605566 C T DDC Missense_Mutation p.V143M 0.19 deleterious(0) probably_damaging(1) TCGA-A2-A0EW-01 8 117862955 117862955 C G RAD21 Missense_Mutation p.E508Q 0.20 tolerated(0.18) benign(0.143) TCGA-A2-A0EW-01 X 153881613 153881613 G A CTAG2 Silent p.G59G 0.29 TCGA-A2-A0ST-01 10 24923969 24923969 C A ARHGAP21 Missense_Mutation p.G111V 0.11 deleterious(0) probably_damaging(1) TCGA-A2-A0ST-01 11 18320508 18320508 T C HPS5 Missense_Mutation p.D332G 0.05 deleterious(0) probably_damaging(1) TCGA-A2-A0ST-01 11 73803504 73803504 G A C2CD3 Silent p.T1158T 0.04 TCGA-A2-A0ST-01 11 77612480 77612480 G A INTS4 Nonsense_Mutation p.R739* 0.06 TCGA-A2-A0ST-01 12 45795739 45795739 C T ANO6 Silent p.S537S 0.09 TCGA-A2-A0ST-01 12 55820142 55820142 G C OR6C76 Silent p.L35L 0.06 TCGA-A2-A0ST-01 17 18653120 18653120 C T FBXW10 Silent p.Y252Y 0.07 TCGA-A2-A0ST-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.09 deleterious(0) probably_damaging(0.999) TCGA-A2-A0ST-01 18 2732340 2732340 C T SMCHD1 Silent p.F1042F 0.05 TCGA-A2-A0ST-01 19 12917877 12917877 G A RNASEH2A Silent p.E61E 0.14 TCGA-A2-A0ST-01 19 41633903 41633903 G A CYP2F1 Silent p.A464A 0.09 TCGA-A2-A0ST-01 19 55716816 55716816 C T PTPRH Missense_Mutation p.R166Q 0.08 unknown(0) TCGA-A2-A0ST-01 1 109888388 109888388 A G SORT1 Silent p.S316S 0.07 TCGA-A2-A0ST-01 1 145522575 145522575 A G PEX11B Missense_Mutation p.M146V 0.12 deleterious(0.03) benign(0.394) TCGA-A2-A0ST-01 1 6313924 6313924 C T GPR153 Missense_Mutation p.V214M 0.10 deleterious(0) probably_damaging(1) TCGA-A2-A0ST-01 2 179477159 179477159 C T TTN Nonsense_Mutation p.W16698* 0.06 TCGA-A2-A0ST-01 2 40656312 40656312 C T SLC8A1 Missense_Mutation p.R370H 0.04 deleterious(0) possibly_damaging(0.812) TCGA-A2-A0ST-01 2 74709369 74709369 G T CCDC142 Nonsense_Mutation p.S199* 0.14 TCGA-A2-A0ST-01 3 15469355 15469355 G A EAF1 Silent p.E23E 0.11 TCGA-A2-A0ST-01 5 156533792 156533792 G A HAVCR2 Silent p.S80S 0.10 TCGA-A2-A0ST-01 5 5463755 5463755 G T KIAA0947 Silent p.V1436V 0.08 TCGA-A2-A0ST-01 6 10587042 10587042 G T GCNT2 Intron 0.06 TCGA-A2-A0ST-01 6 35423973 35423973 G A FANCE Missense_Mutation p.R233K 0.16 tolerated(0.55) benign(0.007) TCGA-A2-A0ST-01 6 43752295 43752295 G T VEGFA Missense_Mutation p.R412L 0.04 deleterious(0) probably_damaging(1) TCGA-A2-A0ST-01 6 8041411 8041411 C G BLOC1S5 Missense_Mutation p.D96H 0.06 tolerated(0.06) benign(0.025) TCGA-A2-A0ST-01 7 127731928 127731928 G T SND1 Missense_Mutation p.A888S 0.08 tolerated(0.8) benign(0.021) TCGA-A2-A0ST-01 9 71628546 71628546 C T PRKACG Missense_Mutation p.V155I 0.07 tolerated(0.44) benign(0.001) TCGA-A2-A0ST-01 X 7811274 7811274 T A VCX Silent p.P10P 0.03 TCGA-A2-A0SU-01 10 8115874 8115875 - G GATA3 Frame_Shift_Ins p.P409Afs*99 0.21 TCGA-A2-A0SU-01 12 125397063 125397063 C A UBC Missense_Mutation p.D419Y 0.13 deleterious(0.02) possibly_damaging(0.673) TCGA-A2-A0SU-01 13 103703754 103703754 A T SLC10A2 Missense_Mutation p.I205N 0.04 deleterious(0) probably_damaging(0.996) TCGA-A2-A0SU-01 13 32972574 32972574 C G BRCA2 Nonsense_Mutation p.Y3308* 0.40 TCGA-A2-A0SU-01 13 45914426 45914427 - A TPT1 Intron 0.26 TCGA-A2-A0SU-01 16 1260048 1260048 G A CACNA1H Missense_Mutation p.R1253H 0.20 deleterious(0) probably_damaging(0.996) TCGA-A2-A0SU-01 16 77326976 77326976 G A ADAMTS18 Silent p.S1062S 0.40 TCGA-A2-A0SU-01 17 25910101 25910101 G A KSR1 Missense_Mutation p.G180E 0.17 deleterious(0) probably_damaging(0.933) TCGA-A2-A0SU-01 17 35468534 35468534 C T ACACA Missense_Mutation p.R2166H 0.18 deleterious(0) possibly_damaging(0.635) TCGA-A2-A0SU-01 17 37825994 37825994 C G PNMT Silent p.V105V 0.11 TCGA-A2-A0SU-01 17 40025782 40025782 G A ACLY Missense_Mutation p.P999L 0.29 deleterious(0) possibly_damaging(0.886) TCGA-A2-A0SU-01 17 79173241 79173241 G A AZI1 Nonsense_Mutation p.Q378* 0.46 TCGA-A2-A0SU-01 17 79258654 79258665 TCTCCACCAGCA - SLC38A10 In_Frame_Del p.M83_E86del 0.23 TCGA-A2-A0SU-01 17 8020092 8020092 A C ALOXE3 Splice_Site p.X250_splice 0.41 TCGA-A2-A0SU-01 18 33793393 33793393 C T MOCOS Missense_Mutation p.A428V 0.24 deleterious(0) probably_damaging(0.951) TCGA-A2-A0SU-01 19 13341008 13341008 C T CACNA1A Missense_Mutation p.V1806I 0.27 benign(0.198) TCGA-A2-A0SU-01 19 13888918 13888918 C G C19orf53 Missense_Mutation p.A69G 0.23 deleterious(0) unknown(0) TCGA-A2-A0SU-01 19 14779643 14779643 A T EMR3 Missense_Mutation p.L16H 0.04 deleterious(0.01) unknown(0) TCGA-A2-A0SU-01 19 17256205 17256205 A C MYO9B Splice_Site p.X281_splice 0.04 TCGA-A2-A0SU-01 19 17256206 17256206 G A MYO9B Splice_Site p.X281_splice 0.04 TCGA-A2-A0SU-01 19 19338574 19338574 G A NCAN Silent p.Q715Q 0.14 TCGA-A2-A0SU-01 19 36109580 36109580 G A HAUS5 Missense_Mutation p.R332H 0.28 tolerated(0.58) benign(0.001) TCGA-A2-A0SU-01 1 109268547 109268547 C T FNDC7 Silent p.G344G 0.26 TCGA-A2-A0SU-01 1 207925431 207925431 A G CD46 5'UTR 0.23 TCGA-A2-A0SU-01 2 234580899 234580899 T A UGT1A9 Missense_Mutation p.S107T 0.06 tolerated(0.6) benign(0.07) TCGA-A2-A0SU-01 2 79384752 79384752 T A REG3A Missense_Mutation p.N136Y 0.26 deleterious(0.03) probably_damaging(0.934) TCGA-A2-A0SU-01 3 129207141 129207141 G - IFT122 Frame_Shift_Del p.E683Kfs*23 0.15 TCGA-A2-A0SU-01 3 160122386 160122386 A T SMC4 Intron 0.27 TCGA-A2-A0SU-01 4 3318650 3318650 C A RGS12 Missense_Mutation p.S251R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A0SU-01 6 132643998 132643998 G A MOXD1 Silent p.A375A 0.29 TCGA-A2-A0SU-01 6 138599688 138599688 C T KIAA1244 Silent p.L743L 0.25 TCGA-A2-A0SU-01 7 127222606 127222606 G A GCC1 Missense_Mutation p.T597I 0.38 tolerated(0.07) benign(0.007) TCGA-A2-A0SU-01 7 138482852 138482864 GCAGCGCCTCCCC - TMEM213 Frame_Shift_Del p.Q2Lfs*7 0.28 TCGA-A2-A0SU-01 7 141365068 141365076 TGCCCCCGA - KIAA1147 In_Frame_Del p.I288_G290del 0.17 TCGA-A2-A0SU-01 7 141490297 141490297 C G TAS2R5 Missense_Mutation p.L46V 0.22 tolerated(0.48) possibly_damaging(0.842) TCGA-A2-A0SU-01 7 150217162 150217162 T - GIMAP7 Frame_Shift_Del p.F34Lfs*29 0.09 TCGA-A2-A0SU-01 7 21940980 21940980 G A DNAH11 3'UTR 0.24 TCGA-A2-A0SU-01 7 92762055 92762055 C A SAMD9L Missense_Mutation p.R1077L 0.05 deleterious(0) benign(0.293) TCGA-A2-A0SU-01 8 110412422 110412422 C A PKHD1L1 Missense_Mutation p.A377D 0.04 tolerated(0.13) possibly_damaging(0.688) TCGA-A2-A0SU-01 8 139164791 139164791 G C FAM135B Missense_Mutation p.P643A 0.06 tolerated(0.21) benign(0.007) TCGA-A2-A0SU-01 8 141294029 141294029 A C TRAPPC9 Missense_Mutation p.I789M 0.24 deleterious(0) benign(0.386) TCGA-A2-A0SU-01 8 67086918 67086918 A G TRIM55 3'UTR 0.26 TCGA-A2-A0SX-01 10 135099091 135099091 G A TUBGCP2 Silent p.R616R 0.07 TCGA-A2-A0SX-01 10 135370263 135370263 G A SYCE1 Silent p.H176H 0.27 TCGA-A2-A0SX-01 10 88260074 88260074 G A WAPAL Missense_Mutation p.S309L 0.05 deleterious_low_confidence(0.05) benign(0.002) TCGA-A2-A0SX-01 11 113146243 113146243 C G NCAM1 3'Flank 0.41 TCGA-A2-A0SX-01 11 27393924 27393924 A C LGR4 Silent p.A467A 0.18 TCGA-A2-A0SX-01 11 95555909 95555909 G A CEP57 Intron 0.08 TCGA-A2-A0SX-01 14 106237708 106237708 C T IGHG3 Silent p.A12A 0.51 TCGA-A2-A0SX-01 16 89349106 89349106 C T ANKRD11 Missense_Mutation p.E1282K 0.24 probably_damaging(0.991) TCGA-A2-A0SX-01 17 10248682 10248682 C T MYH13 Missense_Mutation p.S474N 0.52 deleterious(0.03) probably_damaging(0.988) TCGA-A2-A0SX-01 17 37347809 37347809 G T CACNB1 Missense_Mutation p.S70Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-A2-A0SX-01 17 7578253 7578253 C A TP53 Missense_Mutation p.G199V 0.48 deleterious(0) probably_damaging(1) TCGA-A2-A0SX-01 18 24497058 24497058 T G CHST9 Missense_Mutation p.N166T 0.48 tolerated(0.2) benign(0.034) TCGA-A2-A0SX-01 19 15281551 15281551 C T NOTCH3 Missense_Mutation p.A1608T 0.47 deleterious(0) probably_damaging(1) TCGA-A2-A0SX-01 19 17729263 17729263 G A UNC13A Silent p.C1459C 0.03 TCGA-A2-A0SX-01 19 43866329 43866329 T C CD177 3'UTR 0.07 TCGA-A2-A0SX-01 19 55284926 55284926 G A KIR2DL1 Missense_Mutation p.R71H 0.27 tolerated(1) benign(0.002) TCGA-A2-A0SX-01 1 155921009 155921009 C T ARHGEF2 Missense_Mutation p.E772K 0.23 tolerated(0.06) benign(0.092) TCGA-A2-A0SX-01 1 200882775 200882776 - A C1orf106 3'UTR 0.18 TCGA-A2-A0SX-01 1 214491454 214491454 A G SMYD2 Silent p.K127K 0.53 TCGA-A2-A0SX-01 1 236646390 236646390 G A EDARADD 3'Flank 0.14 TCGA-A2-A0SX-01 1 237015858 237015858 C T MTR Missense_Mutation p.S578F 0.14 deleterious(0) probably_damaging(1) TCGA-A2-A0SX-01 1 237023136 237023136 C A MTR Missense_Mutation p.Q653K 0.14 tolerated(0.58) benign(0) TCGA-A2-A0SX-01 1 27676794 27676794 G C SYTL1 Intron 0.33 TCGA-A2-A0SX-01 1 95363189 95363189 A G CNN3 3'UTR 0.19 TCGA-A2-A0SX-01 20 50273503 50273503 C T ATP9A Missense_Mutation p.V494I 0.25 tolerated(0.06) benign(0.005) TCGA-A2-A0SX-01 21 39087178 39087178 C A KCNJ6 Missense_Mutation p.L94F 0.11 tolerated(0.5) benign(0.008) TCGA-A2-A0SX-01 2 242312707 242312707 T A FARP2 Splice_Site p.X61_splice 0.29 TCGA-A2-A0SX-01 2 39281877 39281877 T C SOS1 Missense_Mutation p.T200A 0.23 tolerated(0.09) benign(0.002) TCGA-A2-A0SX-01 2 46803351 46803351 A G RHOQ Silent p.E109E 0.32 TCGA-A2-A0SX-01 2 80136851 80136851 C T CTNNA2 Silent p.R328R 0.19 TCGA-A2-A0SX-01 3 119306694 119306694 G A ADPRH Missense_Mutation p.G348E 0.27 deleterious(0.02) benign(0.059) TCGA-A2-A0SX-01 4 108641343 108641343 G C PAPSS1 5'UTR 0.24 TCGA-A2-A0SX-01 5 31526807 31526807 A C DROSHA Missense_Mutation p.F78C 0.25 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-A2-A0SX-01 6 149208153 149208153 A G UST Silent p.P93P 0.07 TCGA-A2-A0SX-01 6 26031937 26031937 C T HIST1H3B Missense_Mutation p.V118M 0.20 deleterious_low_confidence(0) benign(0.442) TCGA-A2-A0SX-01 8 30701333 30701333 G A TEX15 Missense_Mutation p.P1734L 0.04 deleterious(0) probably_damaging(1) TCGA-A2-A0SX-01 8 92097253 92097253 G C OTUD6B 3'UTR 0.29 TCGA-A2-A0SX-01 9 5921255 5921255 G T KIAA2026 Missense_Mutation p.Q1581K 0.31 deleterious(0) probably_damaging(0.932) TCGA-A2-A0SX-01 X 123195704 123195704 G T STAG2 Nonsense_Mutation p.G540* 0.28 TCGA-A2-A0SX-01 X 18800500 18800500 G T PPEF1 Nonsense_Mutation p.E248* 0.24 TCGA-A2-A0SX-01 X 50659301 50659301 T C BMP15 Silent p.C291C 0.27 TCGA-A2-A0SX-01 X 91132490 91132490 C T PCDH11X Silent p.L417L 0.06 TCGA-A2-A0SY-01 10 100191027 100191027 G A HPS1 Missense_Mutation p.P177S 0.49 deleterious(0.01) possibly_damaging(0.89) TCGA-A2-A0SY-01 10 105779531 105779531 G A SLK Missense_Mutation p.E1058K 0.13 deleterious(0) probably_damaging(0.934) TCGA-A2-A0SY-01 10 105779657 105779657 C G SLK Missense_Mutation p.Q1100E 0.23 tolerated(0.62) benign(0.429) TCGA-A2-A0SY-01 10 134165200 134165200 G A LRRC27 Missense_Mutation p.R339Q 0.29 deleterious(0.01) possibly_damaging(0.885) TCGA-A2-A0SY-01 10 15858876 15858876 C T FAM188A Nonsense_Mutation p.W280* 0.24 TCGA-A2-A0SY-01 10 33502481 33502481 C T NRP1 Missense_Mutation p.E483K 0.25 deleterious(0.02) possibly_damaging(0.771) TCGA-A2-A0SY-01 10 98742128 98742128 A C C10orf12 Silent p.S327S 0.33 TCGA-A2-A0SY-01 11 44069730 44069730 G A ACCSL Silent p.T48T 0.23 TCGA-A2-A0SY-01 11 60292781 60292781 C T MS4A13 Silent p.Y96Y 0.40 TCGA-A2-A0SY-01 11 63953698 63953698 G A STIP1 5'UTR 0.23 TCGA-A2-A0SY-01 11 6412017 6412017 T G SMPD1 Silent p.P63P 0.35 TCGA-A2-A0SY-01 11 71706538 71706538 G C RNF121 Missense_Mutation p.K268N 0.35 deleterious(0) probably_damaging(0.987) TCGA-A2-A0SY-01 11 73676008 73676008 C G DNAJB13 Silent p.V140V 0.32 TCGA-A2-A0SY-01 11 89135609 89135609 G C NOX4 Nonsense_Mutation p.S244* 0.31 TCGA-A2-A0SY-01 12 106734763 106734763 C G TCP11L2 Missense_Mutation p.I434M 0.28 deleterious(0) benign(0.279) TCGA-A2-A0SY-01 12 113731077 113731077 C T TPCN1 Missense_Mutation p.H825Y 0.13 tolerated(0.88) benign(0.005) TCGA-A2-A0SY-01 12 121435565 121435565 C A HNF1A Intron 0.30 TCGA-A2-A0SY-01 12 124218479 124218479 G C ATP6V0A2 Missense_Mutation p.V219L 0.24 tolerated(0.53) benign(0.006) TCGA-A2-A0SY-01 12 130648771 130648771 G A FZD10 Silent p.K428K 0.03 TCGA-A2-A0SY-01 12 133306572 133306572 G A ANKLE2 Silent p.L726L 0.08 TCGA-A2-A0SY-01 12 2622018 2622018 G C CACNA1C Missense_Mutation p.D420H 0.18 deleterious(0) probably_damaging(0.995) TCGA-A2-A0SY-01 12 31451107 31451107 C T FAM60A Missense_Mutation p.R11Q 0.35 tolerated(0.08) possibly_damaging(0.786) TCGA-A2-A0SY-01 12 57969055 57969055 G A KIF5A Silent p.Q635Q 0.32 TCGA-A2-A0SY-01 12 85449664 85449664 G A LRRIQ1 Missense_Mutation p.E365K 0.29 deleterious(0) possibly_damaging(0.848) TCGA-A2-A0SY-01 12 90028579 90028579 C T ATP2B1 Missense_Mutation p.D255N 0.30 tolerated(0.15) possibly_damaging(0.507) TCGA-A2-A0SY-01 13 47286664 47286664 G C LRCH1 Missense_Mutation p.R529T 0.33 tolerated(0.05) benign(0.138) TCGA-A2-A0SY-01 13 95232153 95232153 C T TGDS Missense_Mutation p.E204K 0.30 deleterious(0) probably_damaging(0.995) TCGA-A2-A0SY-01 14 106963186 106963186 C G IGHV1-45 Missense_Mutation p.K32N 0.35 deleterious(0.01) benign(0.376) TCGA-A2-A0SY-01 14 38060639 38060639 G C FOXA1 Missense_Mutation p.I450M 0.36 tolerated(0.35) probably_damaging(0.968) TCGA-A2-A0SY-01 14 38061250 38061250 G A FOXA1 Missense_Mutation p.H247Y 0.35 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 14 58875253 58875253 G C TOMM20L Missense_Mutation p.E138Q 0.27 tolerated(0.23) possibly_damaging(0.601) TCGA-A2-A0SY-01 15 102358587 102358587 C G OR4F15 Silent p.L66L 0.13 TCGA-A2-A0SY-01 15 63901266 63901266 G A HERC1 3'UTR 0.27 TCGA-A2-A0SY-01 15 83518532 83518532 C T HOMER2 Missense_Mutation p.D334N 0.27 deleterious(0) probably_damaging(0.998) TCGA-A2-A0SY-01 16 49669991 49669991 G C ZNF423 Silent p.V1024V 0.05 TCGA-A2-A0SY-01 16 68772203 68772204 - CA CDH1 Frame_Shift_Ins p.S19Pfs*38 0.45 TCGA-A2-A0SY-01 16 709322 709322 C T WDR90 Nonsense_Mutation p.Q1044* 0.18 TCGA-A2-A0SY-01 16 709329 709329 C G WDR90 Missense_Mutation p.S1046C 0.18 deleterious(0.01) possibly_damaging(0.635) TCGA-A2-A0SY-01 16 7637292 7637292 G A RBFOX1 Missense_Mutation p.R173Q 0.05 deleterious(0.01) possibly_damaging(0.596) TCGA-A2-A0SY-01 16 84914242 84914242 C T CRISPLD2 Intron 0.43 TCGA-A2-A0SY-01 17 18157406 18157406 C T FLII Silent p.L222L 0.50 TCGA-A2-A0SY-01 17 36288216 36288216 G A TBC1D3F Missense_Mutation p.G101E 0.08 deleterious(0) probably_damaging(0.976) TCGA-A2-A0SY-01 17 37265502 37265502 G A PLXDC1 Missense_Mutation p.S133L 0.14 tolerated(0.09) possibly_damaging(0.676) TCGA-A2-A0SY-01 17 39977965 39977965 G A FKBP10 Missense_Mutation p.D487N 0.12 tolerated(0.22) benign(0.04) TCGA-A2-A0SY-01 17 40021290 40021290 G A KLHL11 Missense_Mutation p.R112C 0.41 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 17 40370189 40370189 G C STAT5B Silent p.L383L 0.51 TCGA-A2-A0SY-01 17 45664628 45664628 C G NPEPPS Missense_Mutation p.S338C 0.43 deleterious(0) probably_damaging(0.997) TCGA-A2-A0SY-01 17 54990828 54990828 G A TRIM25 Silent p.C174C 0.58 TCGA-A2-A0SY-01 17 56084325 56084325 G A SRSF1 Silent p.F58F 0.30 TCGA-A2-A0SY-01 17 65026894 65026894 C T CACNG4 Missense_Mutation p.S253L 0.21 deleterious(0.01) benign(0.052) TCGA-A2-A0SY-01 17 7217617 7217617 C - GPS2 Frame_Shift_Del p.E104Nfs*5 0.36 TCGA-A2-A0SY-01 17 72739463 72739463 C G RAB37 Missense_Mutation p.S122C 0.34 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 17 74729730 74729730 G C METTL23 Missense_Mutation p.E179Q 0.31 tolerated(0.35) benign(0.024) TCGA-A2-A0SY-01 17 79792496 79792496 C T PPP1R27 Missense_Mutation p.G75E 0.28 tolerated(0.49) probably_damaging(0.998) TCGA-A2-A0SY-01 19 14884796 14884796 G T EMR2 Missense_Mutation p.F51L 0.31 deleterious(0.03) possibly_damaging(0.449) TCGA-A2-A0SY-01 19 19905265 19905265 A G ZNF506 3'UTR 0.10 TCGA-A2-A0SY-01 19 19905281 19905281 C G ZNF506 3'UTR 0.08 TCGA-A2-A0SY-01 19 36134362 36134362 C A ETV2 Nonsense_Mutation p.S141* 0.27 TCGA-A2-A0SY-01 19 37211247 37211247 T A ZNF567 Missense_Mutation p.S510T 0.19 tolerated(1) benign(0.004) TCGA-A2-A0SY-01 19 38089341 38089341 G A ZNF540 5'UTR 0.22 TCGA-A2-A0SY-01 19 49657744 49657744 C T HRC Missense_Mutation p.D251N 0.34 tolerated(0.12) possibly_damaging(0.537) TCGA-A2-A0SY-01 19 49657822 49657822 C A HRC Nonsense_Mutation p.E225* 0.23 TCGA-A2-A0SY-01 19 49671554 49671554 C T TRPM4 Silent p.I162I 0.32 TCGA-A2-A0SY-01 19 51217536 51217536 C G SHANK1 Missense_Mutation p.K181N 0.36 probably_damaging(0.958) TCGA-A2-A0SY-01 19 55147158 55147158 G A LILRB1 Intron 0.49 TCGA-A2-A0SY-01 19 5724831 5724831 G A CATSPERD Silent p.V28V 0.28 TCGA-A2-A0SY-01 19 6712586 6712586 G A C3 Missense_Mutation p.S351F 0.29 deleterious(0) probably_damaging(0.998) TCGA-A2-A0SY-01 1 145115767 145115767 C G SEC22B RNA 0.05 TCGA-A2-A0SY-01 1 145299900 145299900 C G NBPF10 Missense_Mutation p.Q317E 0.12 benign(0.01) TCGA-A2-A0SY-01 1 145538042 145538042 C A ITGA10 Silent p.V907V 0.23 TCGA-A2-A0SY-01 1 155580096 155580096 C T MSTO1 Silent p.F19F 0.07 TCGA-A2-A0SY-01 1 161140285 161140285 G A PPOX Silent p.G358G 0.05 TCGA-A2-A0SY-01 1 171535915 171535915 C G PRRC2C Nonsense_Mutation p.S2162* 0.22 TCGA-A2-A0SY-01 1 183542412 183542412 C T NCF2 Missense_Mutation p.E173K 0.23 tolerated(0.33) benign(0.366) TCGA-A2-A0SY-01 1 197071830 197071830 C T ASPM Missense_Mutation p.R2184Q 0.30 tolerated(1) benign(0.001) TCGA-A2-A0SY-01 1 209933475 209933475 G A TRAF3IP3 Missense_Mutation p.E31K 0.17 deleterious(0) possibly_damaging(0.797) TCGA-A2-A0SY-01 1 222892339 222892339 G A BROX Silent p.K58K 0.21 TCGA-A2-A0SY-01 1 236924389 236924389 C T ACTN2 Silent p.F814F 0.21 TCGA-A2-A0SY-01 1 236988693 236988693 C T MTR Silent p.H307H 0.23 TCGA-A2-A0SY-01 1 247614687 247614687 C T OR2B11 Missense_Mutation p.D200N 0.23 deleterious(0) probably_damaging(0.997) TCGA-A2-A0SY-01 1 247654482 247654482 C T OR2W5 RNA 0.02 TCGA-A2-A0SY-01 1 247752201 247752201 C A OR2G2 Missense_Mutation p.F180L 0.26 deleterious(0) benign(0.261) TCGA-A2-A0SY-01 1 248845388 248845388 G C OR14I1 Nonsense_Mutation p.S73* 0.21 TCGA-A2-A0SY-01 1 3519148 3519148 C G MEGF6 Missense_Mutation p.E50Q 0.20 tolerated(0.08) benign(0.178) TCGA-A2-A0SY-01 1 45271021 45271021 C T PLK3 Silent p.L573L 0.27 TCGA-A2-A0SY-01 1 45271308 45271308 C G PLK3 Silent p.L633L 0.31 TCGA-A2-A0SY-01 1 6511706 6511706 G A ESPN Silent p.S653S 0.09 TCGA-A2-A0SY-01 1 8482784 8482784 C T RERE Intron 0.31 TCGA-A2-A0SY-01 1 94510272 94510272 T A ABCA4 Missense_Mutation p.T983S 0.38 tolerated(0.14) probably_damaging(0.996) TCGA-A2-A0SY-01 20 50015197 50015197 C T NFATC2 Intron 0.03 TCGA-A2-A0SY-01 20 56094287 56094287 G A CTCFL Missense_Mutation p.R301W 0.21 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 20 62730133 62730133 C T OPRL1 Missense_Mutation p.T365M 0.32 tolerated(0.07) benign(0.002) TCGA-A2-A0SY-01 21 33043723 33043724 - CT SCAF4 Frame_Shift_Ins p.A1145Rfs*10 0.27 TCGA-A2-A0SY-01 22 20458084 20458084 G A RIMBP3 Missense_Mutation p.S1073F 0.09 deleterious(0) probably_damaging(0.998) TCGA-A2-A0SY-01 22 21354267 21354267 C G THAP7 Missense_Mutation p.E278Q 0.30 tolerated(0.07) possibly_damaging(0.829) TCGA-A2-A0SY-01 22 42289279 42289279 G A SREBF2 Silent p.Q789Q 0.37 TCGA-A2-A0SY-01 2 128476996 128476996 G C WDR33 Missense_Mutation p.S868C 0.30 deleterious_low_confidence(0.04) benign(0.005) TCGA-A2-A0SY-01 2 166848244 166848244 G C SCN1A Silent p.L1847L 0.23 TCGA-A2-A0SY-01 2 179560781 179560781 C G TTN Missense_Mutation p.E10340Q 0.31 TCGA-A2-A0SY-01 2 179584560 179584560 C G TTN Splice_Site p.X7887_splice 0.32 TCGA-A2-A0SY-01 2 21247970 21247970 A G APOB Silent p.S757S 0.23 TCGA-A2-A0SY-01 2 216229612 216229612 C T FN1 Missense_Mutation p.G2414E 0.09 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 2 223158461 223158461 G A PAX3 Intron 0.29 TCGA-A2-A0SY-01 2 241712662 241712662 C A KIF1A Missense_Mutation p.R350L 0.26 deleterious(0) probably_damaging(0.999) TCGA-A2-A0SY-01 2 84777043 84777043 G C DNAH6 Missense_Mutation p.E449D 0.29 tolerated(0.19) benign(0.028) TCGA-A2-A0SY-01 3 113172603 113172603 G C SPICE1 Missense_Mutation p.Q618E 0.35 tolerated(0.68) benign(0.023) TCGA-A2-A0SY-01 3 124456998 124456998 G C UMPS Missense_Mutation p.L298F 0.27 deleterious(0) probably_damaging(0.994) TCGA-A2-A0SY-01 3 138426040 138426040 C G PIK3CB Missense_Mutation p.E497D 0.25 tolerated(0.18) benign(0.033) TCGA-A2-A0SY-01 3 142840752 142840752 G A CHST2 Missense_Mutation p.R365H 0.38 tolerated(0.05) probably_damaging(0.997) TCGA-A2-A0SY-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.33 deleterious(0.02) probably_damaging(0.959) TCGA-A2-A0SY-01 3 183041052 183041052 G A MCF2L2 Missense_Mutation p.R192C 0.32 tolerated(1) benign(0.006) TCGA-A2-A0SY-01 3 25502710 25502710 G C RARB Missense_Mutation p.E62Q 0.31 deleterious(0.05) benign(0.188) TCGA-A2-A0SY-01 3 44945471 44945471 G A TGM4 Missense_Mutation p.R356Q 0.38 tolerated(0.62) benign(0.014) TCGA-A2-A0SY-01 3 51743248 51743248 C T GRM2 Silent p.R83R 0.35 TCGA-A2-A0SY-01 3 53757826 53757826 A G CACNA1D Missense_Mutation p.T654A 0.28 tolerated(0.85) benign(0.004) TCGA-A2-A0SY-01 4 110448569 110448569 C T SEC24B Silent p.I1019I 0.32 TCGA-A2-A0SY-01 4 113568490 113568490 C G LARP7 Missense_Mutation p.S268C 0.34 deleterious(0.04) benign(0.178) TCGA-A2-A0SY-01 4 148564057 148564057 G A PRMT10 Nonsense_Mutation p.Q694* 0.24 TCGA-A2-A0SY-01 4 158142091 158142091 C G GRIA2 5'UTR 0.28 TCGA-A2-A0SY-01 4 163032438 163032438 C T FSTL5 Missense_Mutation p.M37I 0.34 tolerated_low_confidence(0.36) benign(0) TCGA-A2-A0SY-01 4 187525585 187525585 C T FAT1 Silent p.L3498L 0.04 TCGA-A2-A0SY-01 4 2906605 2906605 G A ADD1 Missense_Mutation p.D426N 0.26 deleterious(0) possibly_damaging(0.627) TCGA-A2-A0SY-01 4 49030703 49030703 G A CWH43 Missense_Mutation p.E442K 0.29 tolerated(0.11) benign(0.089) TCGA-A2-A0SY-01 4 57355616 57355616 C T SRP72 Silent p.F429F 0.34 TCGA-A2-A0SY-01 4 6718679 6718679 G A BLOC1S4 3'UTR 0.26 TCGA-A2-A0SY-01 4 86916664 86916664 A T ARHGAP24 Silent p.R619R 0.29 TCGA-A2-A0SY-01 5 126793066 126793066 C T MEGF10 3'UTR 0.07 TCGA-A2-A0SY-01 5 132197896 132197896 C G GDF9 Missense_Mutation p.Q250H 0.25 tolerated(0.58) benign(0.027) TCGA-A2-A0SY-01 5 132270412 132270412 G A AFF4 Silent p.P115P 0.45 TCGA-A2-A0SY-01 5 13752344 13752344 G C DNAH5 Missense_Mutation p.L3643V 0.29 possibly_damaging(0.694) TCGA-A2-A0SY-01 5 138728026 138728026 C T PROB1 Silent p.E915E 0.42 TCGA-A2-A0SY-01 5 140802020 140802020 G A PCDHGA11 Missense_Mutation p.R409K 0.26 tolerated_low_confidence(0.43) benign(0.026) TCGA-A2-A0SY-01 5 171777419 171777419 C G SH3PXD2B Missense_Mutation p.Q320H 0.14 tolerated(0.06) possibly_damaging(0.615) TCGA-A2-A0SY-01 5 178552015 178552015 C T ADAMTS2 Missense_Mutation p.E973K 0.47 tolerated(0.51) benign(0.164) TCGA-A2-A0SY-01 5 21842274 21842274 G A CDH12 Silent p.P270P 0.05 TCGA-A2-A0SY-01 5 64886146 64886146 G A TRIM23 3'UTR 0.29 TCGA-A2-A0SY-01 5 66396326 66396326 C G MAST4 Missense_Mutation p.H326D 0.21 possibly_damaging(0.718) TCGA-A2-A0SY-01 5 79095305 79095305 G C CMYA5 Missense_Mutation p.E4026Q 0.31 benign(0.088) TCGA-A2-A0SY-01 5 93732078 93732078 C T KIAA0825 Silent p.L1008L 0.32 TCGA-A2-A0SY-01 6 106740932 106740932 G C ATG5 Missense_Mutation p.L96V 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-A2-A0SY-01 6 129781390 129781390 G C LAMA2 Missense_Mutation p.E2305Q 0.29 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 6 131903781 131903781 C G ARG1 Missense_Mutation p.F170L 0.30 deleterious(0.04) benign(0.191) TCGA-A2-A0SY-01 6 135515023 135515036 CAATGTCCCTCAGC - MYB Frame_Shift_Del p.N271Sfs*10 0.30 TCGA-A2-A0SY-01 6 3017179 3017179 G A NQO2 Missense_Mutation p.G160E 0.40 deleterious(0.02) benign(0.359) TCGA-A2-A0SY-01 6 33385804 33385804 G A CUTA Intron 0.15 TCGA-A2-A0SY-01 6 42997010 42997010 G C RRP36 3'UTR 0.17 TCGA-A2-A0SY-01 6 42997017 42997017 G A RRP36 3'UTR 0.19 TCGA-A2-A0SY-01 6 54191643 54191643 G C TINAG Missense_Mutation p.E185Q 0.26 deleterious(0.02) benign(0.063) TCGA-A2-A0SY-01 6 65301057 65301057 C T EYS Missense_Mutation p.R1568H 0.16 tolerated(1) benign(0) TCGA-A2-A0SY-01 7 113558451 113558451 C G PPP1R3A Missense_Mutation p.D201H 0.11 deleterious(0) possibly_damaging(0.858) TCGA-A2-A0SY-01 7 120387763 120387763 G C KCND2 Missense_Mutation p.E582Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-A2-A0SY-01 7 128409271 128409271 C T CALU 3'UTR 0.32 TCGA-A2-A0SY-01 7 132412276 132412276 C G AC009365.3 Missense_Mutation p.S43C 0.28 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-A2-A0SY-01 7 17913164 17913164 C T SNX13 Missense_Mutation p.R247Q 0.30 deleterious(0.02) benign(0.348) TCGA-A2-A0SY-01 7 77885377 77885377 C T MAGI2 Missense_Mutation p.D644N 0.31 deleterious(0) probably_damaging(1) TCGA-A2-A0SY-01 8 141570514 141570514 G A AGO2 Missense_Mutation p.S205F 0.25 deleterious(0) probably_damaging(0.995) TCGA-A2-A0SY-01 8 145255363 145255363 C T MROH1 Silent p.L354L 0.35 TCGA-A2-A0SY-01 8 145537880 145537880 G A HSF1 Missense_Mutation p.E493K 0.25 deleterious(0) probably_damaging(0.997) TCGA-A2-A0SY-01 8 1844604 1844604 G C ARHGEF10 Missense_Mutation p.E516Q 0.35 deleterious(0) possibly_damaging(0.877) TCGA-A2-A0SY-01 8 19818493 19818493 C G LPL Silent p.L407L 0.30 TCGA-A2-A0SY-01 8 21608226 21608226 G T GFRA2 Missense_Mutation p.S223Y 0.38 deleterious(0) probably_damaging(0.95) TCGA-A2-A0SY-01 8 41471927 41471927 A G AGPAT6 Missense_Mutation p.K312E 0.40 tolerated(0.45) possibly_damaging(0.587) TCGA-A2-A0SY-01 8 68395982 68395982 C T CPA6 Intron 0.32 TCGA-A2-A0SY-01 9 15171960 15171960 G T TTC39B 3'UTR 0.36 TCGA-A2-A0SY-01 9 2729631 2729631 G A KCNV2 Silent p.E514E 0.25 TCGA-A2-A0SY-01 9 32633918 32633918 G C TAF1L Missense_Mutation p.L554V 0.30 tolerated(1) benign(0.041) TCGA-A2-A0SY-01 9 72920174 72920174 A T SMC5 Missense_Mutation p.K492N 0.10 deleterious(0.01) possibly_damaging(0.777) TCGA-A2-A0SY-01 9 847104 847104 C T DMRT1 Nonsense_Mutation p.Q167* 0.42 TCGA-A2-A0SY-01 X 114391183 114391183 G A LRCH2 Missense_Mutation p.T504I 0.30 tolerated(0.11) benign(0.051) TCGA-A2-A0SY-01 X 122820419 122820419 C T THOC2 Silent p.G249G 0.26 TCGA-A2-A0SY-01 X 128631942 128631942 G C SMARCA1 Missense_Mutation p.H462D 0.30 deleterious(0) probably_damaging(0.939) TCGA-A2-A0SY-01 X 1497591 1497591 G A IL3RA Missense_Mutation p.R305Q 0.33 tolerated(0.43) benign(0.012) TCGA-A2-A0SY-01 X 17746433 17746433 G A NHS Missense_Mutation p.E1382K 0.28 deleterious(0.03) possibly_damaging(0.693) TCGA-A2-A0SY-01 X 3007602 3007602 C T ARSF Missense_Mutation p.T299M 0.03 deleterious(0.03) possibly_damaging(0.87) TCGA-A2-A0SY-01 X 30872359 30872359 C G TAB3 Missense_Mutation p.E475Q 0.36 tolerated(0.19) benign(0.03) TCGA-A2-A0SY-01 X 41202029 41202029 G A DDX3X Silent p.E161E 0.32 TCGA-A2-A0SY-01 X 48399825 48399825 G C TBC1D25 Missense_Mutation p.L76F 0.03 deleterious(0.03) probably_damaging(0.916) TCGA-A2-A0SY-01 X 48771429 48771429 C G PIM2 Missense_Mutation p.L305F 0.28 tolerated_low_confidence(0.08) benign(0.001) TCGA-A2-A0SY-01 X 63409936 63409936 A G AMER1 Silent p.P1077P 0.28 TCGA-A2-A0SY-01 X 69283015 69283015 C T OTUD6A Missense_Mutation p.T214M 0.25 deleterious(0) benign(0.425) TCGA-A2-A0SY-01 X 90690783 90690783 C T PABPC5 Silent p.P69P 0.06 TCGA-A2-A0T0-01 10 1089851 1089869 TGCACTTCCTTGAACAGAG - IDI1 Intron 0.57 TCGA-A2-A0T0-01 10 118236225 118236225 A T PNLIPRP3 Missense_Mutation p.N412Y 0.43 deleterious(0.03) possibly_damaging(0.86) TCGA-A2-A0T0-01 10 122646224 122646234 AATCTGAACTT - WDR11 Frame_Shift_Del p.L669Hfs*13 0.38 TCGA-A2-A0T0-01 10 31139084 31139084 G A ZNF438 Nonsense_Mutation p.Q84* 0.27 TCGA-A2-A0T0-01 10 45602557 45602564 ACAGGGTG - RSU1P2 RNA 0.32 TCGA-A2-A0T0-01 10 70332118 70332118 G A TET1 Missense_Mutation p.R8K 0.57 tolerated(0.49) benign(0.017) TCGA-A2-A0T0-01 10 7318923 7318923 T C SFMBT2 Silent p.E267E 0.59 TCGA-A2-A0T0-01 11 108040720 108040720 C T NPAT Missense_Mutation p.V946I 0.32 deleterious(0) probably_damaging(0.989) TCGA-A2-A0T0-01 11 117302417 117302434 GACTTCACATTCTTCCTG - DSCAML1 In_Frame_Del p.R1791_S1796del 0.18 TCGA-A2-A0T0-01 11 3752719 3752725 CCGGACT - NUP98 Frame_Shift_Del p.R542Sfs*26 0.25 TCGA-A2-A0T0-01 11 44948291 44948292 GG - TSPAN18 Frame_Shift_Del p.V229Tfs*25 0.21 TCGA-A2-A0T0-01 11 47296330 47296330 C A MADD Silent p.I93I 0.25 TCGA-A2-A0T0-01 11 60540906 60540906 G A MS4A15 Silent p.A149A 0.23 TCGA-A2-A0T0-01 11 6262921 6262921 T C CNGA4 Missense_Mutation p.L393P 0.30 deleterious(0) benign(0.367) TCGA-A2-A0T0-01 11 6262922 6262922 G T CNGA4 Silent p.L393L 0.30 TCGA-A2-A0T0-01 11 654016 654016 G A DEAF1 Silent p.S513S 0.28 TCGA-A2-A0T0-01 11 66329595 66329595 G A CTSF 3'Flank 0.31 TCGA-A2-A0T0-01 11 67818248 67818248 A C TCIRG1 Missense_Mutation p.K819Q 0.32 tolerated(0.06) possibly_damaging(0.562) TCGA-A2-A0T0-01 11 71639992 71639992 T A RNF121 5'UTR 0.28 TCGA-A2-A0T0-01 11 77929601 77929601 A G GAB2 3'UTR 0.30 TCGA-A2-A0T0-01 12 113812735 113812735 A G PLBD2 Missense_Mutation p.H261R 0.46 deleterious(0) probably_damaging(0.971) TCGA-A2-A0T0-01 12 11461466 11461466 G C PRB4 Missense_Mutation p.Q151E 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-A2-A0T0-01 12 12037502 12037502 G C ETV6 Missense_Mutation p.R378P 0.45 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T0-01 12 122812589 122812589 G A CLIP1 Silent p.L1052L 0.40 TCGA-A2-A0T0-01 12 124413060 124413060 C G DNAH10 Missense_Mutation p.P3960A 0.09 possibly_damaging(0.457) TCGA-A2-A0T0-01 12 49724764 49724764 G C TROAP Intron 0.24 TCGA-A2-A0T0-01 12 52760852 52760852 T A KRT85 Missense_Mutation p.D113V 0.30 deleterious(0) possibly_damaging(0.522) TCGA-A2-A0T0-01 12 53002195 53002195 C T KRT73 Missense_Mutation p.A470T 0.38 tolerated(0.45) benign(0.001) TCGA-A2-A0T0-01 12 56351004 56351004 A G PMEL Silent p.T361T 0.48 TCGA-A2-A0T0-01 13 32953476 32953476 T G BRCA2 Nonsense_Mutation p.L2926* 0.34 TCGA-A2-A0T0-01 13 77754280 77754280 C T MYCBP2 Silent p.A1667A 0.27 TCGA-A2-A0T0-01 13 86368270 86368270 C A SLITRK6 Nonsense_Mutation p.G792* 0.44 TCGA-A2-A0T0-01 14 102901119 102901119 C G TECPR2 Missense_Mutation p.S655R 0.27 tolerated_low_confidence(0.15) benign(0.005) TCGA-A2-A0T0-01 14 106757830 106757830 A G IGHV2-26 Silent p.R59R 0.21 TCGA-A2-A0T0-01 14 20249295 20249295 G A OR4M1 Missense_Mutation p.V272M 0.31 tolerated(0.25) benign(0.396) TCGA-A2-A0T0-01 14 20937620 20937620 C T PNP 5'UTR 0.12 TCGA-A2-A0T0-01 14 33293160 33293160 T A AKAP6 Missense_Mutation p.H2047Q 0.27 tolerated(0.22) benign(0.213) TCGA-A2-A0T0-01 14 45693126 45693135 AAGTTTCTGT - MIS18BP1 Frame_Shift_Del p.L885Ffs*19 0.12 TCGA-A2-A0T0-01 14 74416647 74416647 C A COQ6 5'Flank 0.37 TCGA-A2-A0T0-01 14 92628064 92628064 A G CPSF2 Silent p.L775L 0.35 TCGA-A2-A0T0-01 15 52356303 52356303 T C MAPK6 Silent p.C424C 0.55 TCGA-A2-A0T0-01 15 57545524 57545524 C A TCF12 Missense_Mutation p.A442D 0.32 deleterious(0) probably_damaging(1) TCGA-A2-A0T0-01 16 11367145 11367145 G T PRM3 Missense_Mutation p.S103Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-A2-A0T0-01 16 15833955 15833955 C G MYH11 Missense_Mutation p.E991Q 0.30 possibly_damaging(0.828) TCGA-A2-A0T0-01 16 15850316 15850316 G T MYH11 Missense_Mutation p.A551D 0.32 probably_damaging(1) TCGA-A2-A0T0-01 16 18869547 18869547 C A SMG1 Missense_Mutation p.W1393C 0.28 tolerated(0.13) possibly_damaging(0.72) TCGA-A2-A0T0-01 16 20442397 20442397 T C ACSM5 Splice_Site p.X402_splice 0.23 TCGA-A2-A0T0-01 16 21212763 21212763 C G ZP2 Missense_Mutation p.V541L 0.30 deleterious(0.01) possibly_damaging(0.522) TCGA-A2-A0T0-01 16 21269875 21269875 T C CRYM 3'UTR 0.31 TCGA-A2-A0T0-01 16 3433091 3433091 G C ZSCAN32 Missense_Mutation p.Q407E 0.23 deleterious(0.03) benign(0.18) TCGA-A2-A0T0-01 16 48167699 48167699 G T ABCC12 Missense_Mutation p.Q343K 0.23 deleterious(0.02) probably_damaging(0.969) TCGA-A2-A0T0-01 16 56481707 56481707 A C NUDT21 Missense_Mutation p.F104C 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-A2-A0T0-01 16 75138732 75138732 C G ZNRF1 Missense_Mutation p.L191V 0.29 deleterious(0.04) benign(0.261) TCGA-A2-A0T0-01 17 19235190 19235211 CCCAAAACAATGGAACTACCAG - EPN2 Frame_Shift_Del p.Q480Lfs*9 0.29 TCGA-A2-A0T0-01 17 40266620 40266620 G A KAT2A Silent p.I674I 0.24 TCGA-A2-A0T0-01 17 40468877 40468877 G A STAT3 Silent p.R729R 0.29 TCGA-A2-A0T0-01 17 42287471 42287504 TGGCCCCAGCCCCATTCCTACCTCATATCGCTTT - UBTF Splice_Site p.X538_splice 0.17 TCGA-A2-A0T0-01 17 48614030 48614030 C T EPN3 Missense_Mutation p.S38L 0.26 deleterious(0) probably_damaging(0.961) TCGA-A2-A0T0-01 17 61883961 61883961 A G DDX42 Missense_Mutation p.M265V 0.04 deleterious(0.01) benign(0.214) TCGA-A2-A0T0-01 17 61904522 61904533 TGAGTGTGGCCC - PSMC5 5'Flank 0.41 TCGA-A2-A0T0-01 17 67094096 67094096 G C ABCA6 Missense_Mutation p.P1029A 0.13 deleterious(0.01) probably_damaging(1) TCGA-A2-A0T0-01 17 71332094 71332094 G T SDK2 3'UTR 0.25 TCGA-A2-A0T0-01 17 73491664 73491664 C G KIAA0195 Missense_Mutation p.L962V 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-A2-A0T0-01 17 7405859 7405859 C G POLR2A Missense_Mutation p.I865M 0.39 possibly_damaging(0.734) TCGA-A2-A0T0-01 17 79671378 79671379 - C SLC25A10 Frame_Shift_Ins p.K63Qfs*118 0.50 TCGA-A2-A0T0-01 17 79803027 79803027 T A P4HB Missense_Mutation p.D480V 0.41 tolerated(0.3) benign(0.011) TCGA-A2-A0T0-01 18 14782552 14782552 T C ANKRD30B Silent p.T503T 0.20 TCGA-A2-A0T0-01 18 6850855 6850856 AA - ARHGAP28 Intron 0.33 TCGA-A2-A0T0-01 18 7042183 7042183 C T LAMA1 Missense_Mutation p.V408I 0.05 tolerated(0.2) benign(0.033) TCGA-A2-A0T0-01 19 11170528 11170528 G T SMARCA4 Nonsense_Mutation p.E1579* 0.44 TCGA-A2-A0T0-01 19 12186702 12186702 A C ZNF844 Missense_Mutation p.K256T 0.05 deleterious(0.02) probably_damaging(0.913) TCGA-A2-A0T0-01 19 15990642 15990642 G C CYP4F2 Missense_Mutation p.P394R 0.19 deleterious(0) probably_damaging(0.986) TCGA-A2-A0T0-01 19 16034822 16034822 G C CYP4F11 Missense_Mutation p.L240V 0.22 tolerated(0.41) benign(0.291) TCGA-A2-A0T0-01 19 19790274 19790274 G A ZNF101 Missense_Mutation p.R159H 0.16 tolerated(1) benign(0) TCGA-A2-A0T0-01 19 21477270 21477271 - T ZNF708 Frame_Shift_Ins p.N166Kfs*6 0.19 TCGA-A2-A0T0-01 19 2229852 2229852 C T DOT1L 3'UTR 0.29 TCGA-A2-A0T0-01 19 50840700 50840700 C T NAPSB RNA 0.06 TCGA-A2-A0T0-01 19 52918378 52918378 G C ZNF528 Missense_Mutation p.E91D 0.23 tolerated(0.57) benign(0.085) TCGA-A2-A0T0-01 19 6731281 6731281 C T GPR108 Missense_Mutation p.V455I 0.29 tolerated(1) benign(0.004) TCGA-A2-A0T0-01 19 9086543 9086543 G T MUC16 Missense_Mutation p.P1758T 0.35 unknown(0) TCGA-A2-A0T0-01 19 9297338 9297338 A G OR7D2 Missense_Mutation p.N294S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-A2-A0T0-01 19 9578743 9578743 C A ZNF560 Missense_Mutation p.G294C 0.18 tolerated(1) benign(0) TCGA-A2-A0T0-01 1 100330007 100330007 G C AGL Missense_Mutation p.A176P 0.41 tolerated(0.1) benign(0.395) TCGA-A2-A0T0-01 1 107963749 107963749 T C NTNG1 Intron 0.26 TCGA-A2-A0T0-01 1 109815559 109815559 G A CELSR2 Missense_Mutation p.E2750K 0.27 tolerated_low_confidence(0.17) benign(0.292) TCGA-A2-A0T0-01 1 120927202 120927202 G A FCGR1B Nonsense_Mutation p.Q260* 0.14 TCGA-A2-A0T0-01 1 146696543 146696574 AGCCTTCTTCTACGCAGCACTTGATGGAAGAG - FMO5 Frame_Shift_Del p.S17Gfs*6 0.16 TCGA-A2-A0T0-01 1 151747553 151747553 C G TDRKH Missense_Mutation p.M508I 0.20 tolerated(0.32) benign(0.001) TCGA-A2-A0T0-01 1 152083921 152083921 T C TCHH Missense_Mutation p.K591R 0.22 unknown(0) TCGA-A2-A0T0-01 1 153312921 153312921 G A PGLYRP4 Silent p.L254L 0.25 TCGA-A2-A0T0-01 1 154300293 154300293 T G ATP8B2 Silent p.A6A 0.17 TCGA-A2-A0T0-01 1 170129793 170129793 G T METTL11B Missense_Mutation p.D97Y 0.14 deleterious(0) probably_damaging(1) TCGA-A2-A0T0-01 1 181767487 181767487 A G CACNA1E Silent p.R2153R 0.05 TCGA-A2-A0T0-01 1 192998533 192998533 T C UCHL5 Missense_Mutation p.H140R 0.13 deleterious(0) probably_damaging(1) TCGA-A2-A0T0-01 1 19464664 19464664 T G UBR4 Missense_Mutation p.S2915R 0.45 probably_damaging(0.986) TCGA-A2-A0T0-01 1 201869266 201869266 T C LMOD1 Missense_Mutation p.E292G 0.20 benign(0.006) TCGA-A2-A0T0-01 1 207007722 207007722 C A IL19 Intron 0.31 TCGA-A2-A0T0-01 1 223567939 223567939 C G C1orf65 Missense_Mutation p.C374W 0.14 deleterious(0.05) possibly_damaging(0.723) TCGA-A2-A0T0-01 1 227843257 227843257 A G ZNF678 Missense_Mutation p.K436E 0.16 tolerated(1) benign(0.021) TCGA-A2-A0T0-01 1 228369332 228369332 G T IBA57 3'UTR 0.40 TCGA-A2-A0T0-01 1 233395012 233395012 G C PCNXL2 Missense_Mutation p.A199G 0.15 tolerated_low_confidence(0.15) benign(0.007) TCGA-A2-A0T0-01 1 236739603 236739603 C G HEATR1 Missense_Mutation p.L1000F 0.14 deleterious(0.03) benign(0.221) TCGA-A2-A0T0-01 1 240555839 240555839 T G FMN2 Missense_Mutation p.N1629K 0.21 benign(0.127) TCGA-A2-A0T0-01 1 247067282 247067282 T A AHCTF1 Missense_Mutation p.K321M 0.14 deleterious(0) probably_damaging(0.973) TCGA-A2-A0T0-01 1 247768964 247768964 T C OR2G3 Missense_Mutation p.V26A 0.19 tolerated(0.18) benign(0.003) TCGA-A2-A0T0-01 1 248737771 248737771 G T OR2T34 Silent p.T96T 0.16 TCGA-A2-A0T0-01 1 248756246 248756246 G T OR2T10 Missense_Mutation p.S275Y 0.17 deleterious(0.01) possibly_damaging(0.548) TCGA-A2-A0T0-01 1 248756597 248756600 ATGA CATCCACTGAGCTCAGTG OR2T10 Frame_Shift_Ins p.F157Sfs*13 0.16 TCGA-A2-A0T0-01 1 34191097 34191097 C T CSMD2 Missense_Mutation p.D810N 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-A2-A0T0-01 1 38030643 38030643 T C DNALI1 Missense_Mutation p.I275T 0.36 deleterious(0) probably_damaging(0.933) TCGA-A2-A0T0-01 1 38078565 38078565 G T RSPO1 Silent p.G218G 0.40 TCGA-A2-A0T0-01 1 38197218 38197218 C A EPHA10 Missense_Mutation p.G510W 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-A2-A0T0-01 1 55175761 55175761 C A MROH7 Missense_Mutation p.H1291Q 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A2-A0T0-01 1 55534692 55534692 A C USP24 3'UTR 0.25 TCGA-A2-A0T0-01 1 94543428 94543428 G T ABCA4 Missense_Mutation p.P458T 0.44 deleterious(0.01) possibly_damaging(0.493) TCGA-A2-A0T0-01 1 957718 957718 G A AGRN Silent p.R113R 0.29 TCGA-A2-A0T0-01 20 23017141 23017141 G T SSTR4 Nonsense_Mutation p.E341* 0.27 TCGA-A2-A0T0-01 20 31627293 31627293 C T BPIFB6 Silent p.S347S 0.24 TCGA-A2-A0T0-01 20 56929271 56929271 A C RAB22A Missense_Mutation p.E146A 0.21 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T0-01 20 56929272 56929272 G T RAB22A Missense_Mutation p.E146D 0.21 deleterious(0) probably_damaging(0.995) TCGA-A2-A0T0-01 21 17205712 17205712 C A USP25 Missense_Mutation p.T680K 0.27 tolerated(0.39) benign(0.134) TCGA-A2-A0T0-01 21 32015243 32015243 C A KRTAP20-3 Silent p.G12G 0.27 TCGA-A2-A0T0-01 21 38567987 38567987 G C TTC3 Missense_Mutation p.E1743D 0.29 tolerated(0.4) benign(0.045) TCGA-A2-A0T0-01 21 42824598 42824598 G A MX1 Silent p.L520L 0.20 TCGA-A2-A0T0-01 22 24717313 24717313 C T SPECC1L Missense_Mutation p.T122I 0.23 deleterious(0.03) benign(0.058) TCGA-A2-A0T0-01 22 40746017 40746017 C A ADSL Missense_Mutation p.S112Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T0-01 22 50632861 50632861 G T TRABD Missense_Mutation p.A69S 0.22 tolerated(0.13) benign(0.05) TCGA-A2-A0T0-01 2 101193071 101193071 T C PDCL3 3'UTR 0.24 TCGA-A2-A0T0-01 2 113321941 113321941 A G POLR1B Splice_Site p.X538_splice 0.27 TCGA-A2-A0T0-01 2 128084359 128084359 T A MAP3K2 Silent p.P167P 0.36 TCGA-A2-A0T0-01 2 128366364 128366364 G A MYO7B Missense_Mutation p.V909I 0.31 tolerated(0.74) benign(0.007) TCGA-A2-A0T0-01 2 139428382 139428382 T A NXPH2 3'UTR 0.21 TCGA-A2-A0T0-01 2 15378705 15378705 C T NBAS Missense_Mutation p.A1944T 0.33 tolerated(0.29) benign(0.002) TCGA-A2-A0T0-01 2 179398516 179398516 G A TTN Missense_Mutation p.R34276W 0.18 TCGA-A2-A0T0-01 2 179437368 179437368 A T TTN Nonsense_Mutation p.Y24497* 0.30 TCGA-A2-A0T0-01 2 179441108 179441113 CAGTGA - TTN In_Frame_Del p.V23249_T23250del 0.21 TCGA-A2-A0T0-01 2 191117010 191117010 C G HIBCH Missense_Mutation p.G181R 0.18 deleterious(0) probably_damaging(0.982) TCGA-A2-A0T0-01 2 209110110 209110110 T A IDH1 Missense_Mutation p.K151N 0.04 deleterious_low_confidence(0) benign(0.358) TCGA-A2-A0T0-01 2 222290743 222290743 C G EPHA4 3'UTR 0.28 TCGA-A2-A0T0-01 2 227886853 227886853 G C COL4A4 Missense_Mutation p.P1376R 0.31 unknown(0) TCGA-A2-A0T0-01 2 27465275 27465275 G C CAD Missense_Mutation p.G2068R 0.12 deleterious(0) probably_damaging(0.997) TCGA-A2-A0T0-01 2 27465276 27465276 G T CAD Missense_Mutation p.G2068V 0.12 deleterious(0) probably_damaging(0.997) TCGA-A2-A0T0-01 2 29432670 29432675 ATCCCG - ALK In_Frame_Del p.F1271_M1273delinsL 0.20 TCGA-A2-A0T0-01 2 48722912 48722912 T C PPP1R21 Splice_Site p.X564_splice 0.07 TCGA-A2-A0T0-01 2 61343192 61343192 A G KIAA1841 Missense_Mutation p.K608R 0.16 tolerated(0.08) benign(0.018) TCGA-A2-A0T0-01 2 71062912 71062912 G A CD207 5'UTR 0.23 TCGA-A2-A0T0-01 2 73215386 73215386 C T SFXN5 Splice_Site p.X209_splice 0.26 TCGA-A2-A0T0-01 2 74689166 74689166 C T MOGS Missense_Mutation p.D584N 0.07 deleterious(0) probably_damaging(1) TCGA-A2-A0T0-01 2 96546211 96546211 C T ANKRD36C Missense_Mutation p.A172T 0.19 deleterious(0.01) benign(0.321) TCGA-A2-A0T0-01 3 108788562 108788562 C T MORC1 Silent p.L244L 0.05 TCGA-A2-A0T0-01 3 114018446 114018446 G C TIGIT Missense_Mutation p.A132P 0.27 tolerated(0.13) benign(0.055) TCGA-A2-A0T0-01 3 119150930 119150930 G C TMEM39A Silent p.L455L 0.28 TCGA-A2-A0T0-01 3 119379073 119379073 C T POPDC2 Silent p.L66L 0.29 TCGA-A2-A0T0-01 3 121980913 121980913 A T CASR Missense_Mutation p.H344L 0.27 tolerated(0.25) benign(0.124) TCGA-A2-A0T0-01 3 130284028 130284028 C A COL6A6 Missense_Mutation p.S284R 0.32 tolerated(0.25) possibly_damaging(0.82) TCGA-A2-A0T0-01 3 137983034 137983034 G C ARMC8 Missense_Mutation p.V413L 0.37 tolerated(0.05) benign(0.439) TCGA-A2-A0T0-01 3 138216888 138216888 G C CEP70 Missense_Mutation p.L573V 0.42 deleterious(0) probably_damaging(0.998) TCGA-A2-A0T0-01 3 140123537 140123537 C A CLSTN2 Missense_Mutation p.S189Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-A2-A0T0-01 3 17053574 17053574 G A PLCL2 Nonsense_Mutation p.W786* 0.24 TCGA-A2-A0T0-01 3 17131237 17131249 CTTTTGAAATATG - PLCL2 Frame_Shift_Del p.L948Rfs*8 0.22 TCGA-A2-A0T0-01 3 194118427 194118427 C T GP5 Silent p.K195K 0.27 TCGA-A2-A0T0-01 3 23932006 23932006 C G UBE2E1 Missense_Mutation p.P164R 0.25 deleterious(0.01) possibly_damaging(0.597) TCGA-A2-A0T0-01 3 39229254 39229254 C T XIRP1 Missense_Mutation p.M561I 0.25 tolerated(0.17) benign(0.011) TCGA-A2-A0T0-01 3 46621557 46621557 G C TDGF1 Intron 0.39 TCGA-A2-A0T0-01 3 49053734 49053734 C A DALRD3 Missense_Mutation p.G396C 0.40 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T0-01 3 52820422 52820422 C G ITIH1 Missense_Mutation p.L569V 0.18 deleterious(0) probably_damaging(0.998) TCGA-A2-A0T0-01 3 77614134 77614134 T C ROBO2 Missense_Mutation p.V587A 0.14 deleterious(0.01) possibly_damaging(0.457) TCGA-A2-A0T0-01 4 113483568 113483589 AAAGTAGTCCTGAATGTTTTTC - C4orf21 Frame_Shift_Del p.K1546Ifs*7 0.12 TCGA-A2-A0T0-01 4 125631416 125631416 G C ANKRD50 Missense_Mutation p.T84R 0.21 deleterious(0) probably_damaging(0.99) TCGA-A2-A0T0-01 4 144796657 144796657 T A GYPE Intron 0.27 TCGA-A2-A0T0-01 4 146791465 146791465 C T ZNF827 Missense_Mutation p.G638E 0.29 tolerated(0.06) benign(0.001) TCGA-A2-A0T0-01 4 15539732 15539732 A T CC2D2A Missense_Mutation p.S659C 0.30 deleterious(0.01) possibly_damaging(0.669) TCGA-A2-A0T0-01 4 15539734 15539734 C T CC2D2A Silent p.S659S 0.30 TCGA-A2-A0T0-01 4 169292767 169292767 T A DDX60L Missense_Mutation p.N1642Y 0.18 deleterious(0) possibly_damaging(0.813) TCGA-A2-A0T0-01 4 1838173 1838173 C T LETM1 Missense_Mutation p.E241K 0.34 deleterious(0.01) possibly_damaging(0.85) TCGA-A2-A0T0-01 4 3243207 3243207 G A HTT 3'UTR 0.20 TCGA-A2-A0T0-01 4 37848640 37848640 C T PGM2 Missense_Mutation p.R366C 0.06 tolerated(0.08) benign(0.001) TCGA-A2-A0T0-01 4 55156541 55156541 G C PDGFRA Missense_Mutation p.R981P 0.31 deleterious(0.03) probably_damaging(0.949) TCGA-A2-A0T0-01 4 69519794 69519794 T C UGT2B15 Missense_Mutation p.D425G 0.28 deleterious(0) probably_damaging(0.993) TCGA-A2-A0T0-01 4 86863218 86863218 G T ARHGAP24 Splice_Site p.X131_splice 0.25 TCGA-A2-A0T0-01 4 89388332 89388332 C A HERC5 Nonsense_Mutation p.S345* 0.28 TCGA-A2-A0T0-01 5 101572605 101572605 A G SLCO4C1 Missense_Mutation p.V711A 0.33 tolerated(0.09) benign(0.156) TCGA-A2-A0T0-01 5 107006330 107006330 G T EFNA5 5'UTR 0.29 TCGA-A2-A0T0-01 5 118824925 118824925 C G HSD17B4 Missense_Mutation p.L246V 0.29 tolerated(0.36) possibly_damaging(0.539) TCGA-A2-A0T0-01 5 128863507 128863507 C G ADAMTS19 Missense_Mutation p.L379V 0.39 tolerated(0.21) probably_damaging(0.934) TCGA-A2-A0T0-01 5 132412489 132412489 G C HSPA4 Missense_Mutation p.E269D 0.39 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T0-01 5 13841155 13841155 G A DNAH5 Nonsense_Mutation p.Q1857* 0.22 TCGA-A2-A0T0-01 5 140562836 140562836 C T PCDHB16 Silent p.D234D 0.31 TCGA-A2-A0T0-01 5 140595171 140595171 G A PCDHB13 Silent p.P492P 0.30 TCGA-A2-A0T0-01 5 153144138 153144138 G C GRIA1 Missense_Mutation p.Q666H 0.22 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T0-01 5 169507239 169507239 G T DOCK2 Missense_Mutation p.V1747F 0.32 tolerated_low_confidence(0.05) benign(0.049) TCGA-A2-A0T0-01 5 178585812 178585812 G A ADAMTS2 Silent p.L348L 0.28 TCGA-A2-A0T0-01 5 33456148 33456148 T C TARS Silent p.N278N 0.13 TCGA-A2-A0T0-01 5 61875866 61875866 C T LRRC70 Nonsense_Mutation p.Q201* 0.47 TCGA-A2-A0T0-01 5 64748724 64748724 G T ADAMTS6 Missense_Mutation p.P218H 0.38 tolerated(0.15) benign(0.013) TCGA-A2-A0T0-01 5 79815720 79815720 G A FAM151B Missense_Mutation p.V176I 0.06 tolerated(0.42) benign(0.026) TCGA-A2-A0T0-01 5 90671327 90671327 C T ARRDC3 Splice_Site p.X205_splice 0.28 TCGA-A2-A0T0-01 5 93752964 93752964 G C KIAA0825 Missense_Mutation p.N868K 0.40 tolerated(0.95) benign(0.355) TCGA-A2-A0T0-01 6 116905910 116905913 TTTA - RWDD1 Frame_Shift_Del p.F54Hfs*21 0.10 TCGA-A2-A0T0-01 6 129759861 129759861 G C LAMA2 Missense_Mutation p.L2013F 0.06 tolerated(0.13) possibly_damaging(0.797) TCGA-A2-A0T0-01 6 134493906 134493906 A T SGK1 Missense_Mutation p.Y281N 0.06 deleterious(0) probably_damaging(0.955) TCGA-A2-A0T0-01 6 26123995 26123995 C G HIST1H2BC Silent p.L46L 0.25 TCGA-A2-A0T0-01 6 27799185 27799185 G C HIST1H4K Missense_Mutation p.R41G 0.08 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-A2-A0T0-01 6 31729393 31729393 G C MSH5 Splice_Site p.X728_splice 0.12 TCGA-A2-A0T0-01 6 43323219 43323219 C T ZNF318 Missense_Mutation p.R618Q 0.26 probably_damaging(0.998) TCGA-A2-A0T0-01 6 75899454 75899454 A T COL12A1 Missense_Mutation p.Y158N 0.12 probably_damaging(0.999) TCGA-A2-A0T0-01 7 103216144 103216144 C A RELN Missense_Mutation p.R1385I 0.25 tolerated(0.09) benign(0.103) TCGA-A2-A0T0-01 7 122635007 122635007 A C TAS2R16 Missense_Mutation p.S228A 0.45 deleterious(0.01) possibly_damaging(0.884) TCGA-A2-A0T0-01 7 124387321 124387321 T G GPR37 Missense_Mutation p.Q367P 0.48 tolerated(0.07) probably_damaging(0.972) TCGA-A2-A0T0-01 7 21550872 21550872 C T SP4 Silent p.N780N 0.22 TCGA-A2-A0T0-01 7 21659621 21659621 C T DNAH11 Silent p.Y1480Y 0.30 TCGA-A2-A0T0-01 7 44555421 44555421 G C NPC1L1 Silent p.P1286P 0.23 TCGA-A2-A0T0-01 7 5396731 5396731 G A TNRC18 Silent p.D1670D 0.04 TCGA-A2-A0T0-01 7 73151593 73151593 A T ABHD11 Silent p.R197R 0.33 TCGA-A2-A0T0-01 7 99097679 99097679 T C ZNF394 Missense_Mutation p.D13G 0.32 tolerated_low_confidence(0.18) benign(0.011) TCGA-A2-A0T0-01 8 103299695 103299695 G A UBR5 Silent p.S1641S 0.19 TCGA-A2-A0T0-01 8 141753376 141753376 C A PTK2 Missense_Mutation p.G563V 0.18 deleterious(0.01) probably_damaging(1) TCGA-A2-A0T0-01 8 144344022 144344022 G C ZFP41 3'UTR 0.33 TCGA-A2-A0T0-01 8 144669010 144669010 A T EEF1D Silent p.A368A 0.23 TCGA-A2-A0T0-01 8 144994265 144994265 G C PLEC Missense_Mutation p.P3379A 0.19 possibly_damaging(0.684) TCGA-A2-A0T0-01 8 25193755 25193755 G A DOCK5 Silent p.V731V 0.42 TCGA-A2-A0T0-01 8 35541224 35541224 T A UNC5D Missense_Mutation p.S244T 0.24 tolerated(1) benign(0.006) TCGA-A2-A0T0-01 8 62563641 62563641 G C ASPH Missense_Mutation p.S153C 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-A2-A0T0-01 8 68089921 68089921 T C CSPP1 Missense_Mutation p.L1034S 0.29 tolerated(0.32) probably_damaging(0.948) TCGA-A2-A0T0-01 8 69033276 69033276 T A PREX2 Missense_Mutation p.F1239Y 0.26 tolerated(1) benign(0) TCGA-A2-A0T0-01 9 130911793 130911793 G C LCN2 5'UTR 0.12 TCGA-A2-A0T0-01 9 140772590 140772590 T G CACNA1B Missense_Mutation p.F69V 0.28 deleterious(0.02) possibly_damaging(0.587) TCGA-A2-A0T0-01 9 93607735 93607735 C G SYK Missense_Mutation p.A146G 0.17 deleterious(0) probably_damaging(0.985) TCGA-A2-A0T0-01 X 100807921 100807921 G A ARMCX1 Missense_Mutation p.R3H 0.38 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-A2-A0T0-01 X 139866173 139866173 T G CDR1 Missense_Mutation p.D120A 0.32 deleterious(0.05) benign(0.017) TCGA-A2-A0T0-01 X 152686529 152686529 G A ZFP92 Missense_Mutation p.G232S 0.36 tolerated(0.1) benign(0.205) TCGA-A2-A0T0-01 X 23934370 23934370 T C CXorf58 Silent p.F116F 0.04 TCGA-A2-A0T0-01 X 2799349 2799363 GCTGTTGAACCTTGT - GYG2 3'UTR 0.27 TCGA-A2-A0T0-01 X 35985882 35985882 A G CXorf22 Missense_Mutation p.M583V 0.28 tolerated(0.13) benign(0) TCGA-A2-A0T0-01 X 47774342 47774342 G C ZNF81 Missense_Mutation p.K99N 0.18 tolerated(0.09) benign(0.001) TCGA-A2-A0T0-01 X 48682346 48682346 T C HDAC6 Silent p.A1106A 0.22 TCGA-A2-A0T0-01 X 48751221 48751221 A G TIMM17B Missense_Mutation p.I181T 0.07 deleterious(0) probably_damaging(0.936) TCGA-A2-A0T0-01 X 48925640 48925640 T C CCDC120 Intron 0.27 TCGA-A2-A0T1-01 12 101551049 101551049 G A SLC5A8 3'UTR 0.10 TCGA-A2-A0T1-01 12 120636935 120636935 A G RPLP0 Silent p.L102L 0.18 TCGA-A2-A0T1-01 12 122626250 122626250 C T MLXIP Missense_Mutation p.T884M 0.13 deleterious(0) probably_damaging(0.964) TCGA-A2-A0T1-01 12 2714892 2714892 C T CACNA1C Silent p.I1052I 0.10 TCGA-A2-A0T1-01 14 65264479 65264479 G - SPTB Frame_Shift_Del p.H384Tfs*5 0.19 TCGA-A2-A0T1-01 15 100871204 100871204 G A ADAMTS17 Missense_Mutation p.S169F 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A0T1-01 15 78882197 78882197 A G CHRNA5 Missense_Mutation p.N155S 0.08 tolerated(0.11) benign(0.217) TCGA-A2-A0T1-01 16 32266379 32266379 A G TP53TG3D 3'UTR 0.25 TCGA-A2-A0T1-01 17 42114842 42114842 G A LSM12 Missense_Mutation p.P145S 0.05 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T1-01 17 42226188 42226188 C T C17orf53 Silent p.P339P 0.17 TCGA-A2-A0T1-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.18 deleterious(0) probably_damaging(0.998) TCGA-A2-A0T1-01 19 57911002 57911002 C T ZNF548 Silent p.Y461Y 0.04 TCGA-A2-A0T1-01 1 235940593 235940593 C A LYST Missense_Mutation p.V1744F 0.08 deleterious(0.01) possibly_damaging(0.462) TCGA-A2-A0T1-01 1 242048769 242048769 A T EXO1 Missense_Mutation p.I789F 0.07 deleterious(0.02) possibly_damaging(0.536) TCGA-A2-A0T1-01 20 2097615 2097615 A G STK35 Missense_Mutation p.N399S 0.08 tolerated(0.38) benign(0.03) TCGA-A2-A0T1-01 20 54987537 54987537 A T CASS4 Missense_Mutation p.D8V 0.10 deleterious(0.04) benign(0.003) TCGA-A2-A0T1-01 21 19701610 19701610 A G TMPRSS15 Silent p.C552C 0.04 TCGA-A2-A0T1-01 21 45194018 45194018 C T CSTB 3'UTR 0.18 TCGA-A2-A0T1-01 2 118864382 118864382 A G INSIG2 Missense_Mutation p.T147A 0.17 tolerated(0.54) probably_damaging(0.996) TCGA-A2-A0T1-01 2 219509721 219509721 C T ZNF142 Silent p.R506R 0.33 TCGA-A2-A0T1-01 3 148750037 148750037 A C HLTF Missense_Mutation p.I1000M 0.28 tolerated(0.06) benign(0.285) TCGA-A2-A0T1-01 3 97124107 97124107 T C EPHA6 Missense_Mutation p.Y574H 0.08 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T1-01 5 147505305 147505305 G A SPINK5 Missense_Mutation p.R950Q 0.08 tolerated(0.25) benign(0.411) TCGA-A2-A0T1-01 6 170594100 170594100 C T DLL1 Missense_Mutation p.D386N 0.08 tolerated(0.78) benign(0.005) TCGA-A2-A0T1-01 6 27114334 27114334 C T HIST1H2BK Missense_Mutation p.A82T 0.20 deleterious_low_confidence(0.02) probably_damaging(0.924) TCGA-A2-A0T1-01 6 71212389 71212389 G A FAM135A Silent p.A308A 0.08 TCGA-A2-A0T1-01 7 111629136 111629136 T A DOCK4 Missense_Mutation p.H133L 0.21 deleterious(0.03) possibly_damaging(0.613) TCGA-A2-A0T1-01 7 76953030 76953031 - A GSAP Frame_Shift_Ins p.L619Ffs*13 0.12 TCGA-A2-A0T1-01 8 98828398 98828398 T A LAPTM4B Missense_Mutation p.I224K 0.06 deleterious(0) probably_damaging(0.94) TCGA-A2-A0T1-01 9 131380311 131380311 G A SPTAN1 Missense_Mutation p.G1842R 0.32 deleterious(0.01) possibly_damaging(0.837) TCGA-A2-A0T1-01 9 32542366 32542366 A C TOPORS Silent p.S719S 0.09 TCGA-A2-A0T1-01 9 99521223 99521223 C A ZNF510 Missense_Mutation p.C630F 0.08 deleterious(0) probably_damaging(1) TCGA-A2-A0T1-01 X 12905625 12905625 T C TLR7 Silent p.P666P 0.07 TCGA-A2-A0T1-01 X 48891049 48891049 C T TFE3 Missense_Mutation p.R356H 0.06 deleterious(0) benign(0.059) TCGA-A2-A0T3-01 10 15649741 15649741 C T ITGA8 Missense_Mutation p.V567I 0.37 tolerated(0.32) benign(0.001) TCGA-A2-A0T3-01 10 88988363 88988363 G T NUTM2A Silent p.V242V 0.32 TCGA-A2-A0T3-01 11 55873220 55873220 G T OR8H2 Missense_Mutation p.K234N 0.22 deleterious(0) probably_damaging(0.978) TCGA-A2-A0T3-01 11 607853 607853 G C PHRF1 Silent p.T798T 0.21 TCGA-A2-A0T3-01 11 64374729 64374729 G A NRXN2 Missense_Mutation p.P1693L 0.52 tolerated(0.08) benign(0.125) TCGA-A2-A0T3-01 12 102572481 102572481 G C PARPBP Missense_Mutation p.A373P 0.35 deleterious(0) probably_damaging(1) TCGA-A2-A0T3-01 12 6458148 6458148 C T SCNN1A Silent p.S566S 0.16 TCGA-A2-A0T3-01 17 57057757 57057757 C T PPM1E Missense_Mutation p.R545C 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A2-A0T3-01 17 7577051 7577079 TGAGGCTCCCCTTTCTTGCGGAGATTCTC - TP53 Frame_Shift_Del p.E287Pfs*9 0.71 TCGA-A2-A0T3-01 18 70417577 70417577 G T NETO1 Silent p.R421R 0.33 TCGA-A2-A0T3-01 19 10446501 10446501 G A ICAM3 Silent p.P165P 0.10 TCGA-A2-A0T3-01 19 9091513 9091513 G T MUC16 Missense_Mutation p.T101N 0.21 unknown(0) TCGA-A2-A0T3-01 1 109808508 109808509 - T CELSR2 Frame_Shift_Ins p.A1962Cfs*2 0.67 TCGA-A2-A0T3-01 1 148346712 148346712 C T NBPF20 Missense_Mutation p.M15I 0.06 benign(0.017) TCGA-A2-A0T3-01 1 16952326 16952326 G A CROCCP2 3'Flank 0.14 TCGA-A2-A0T3-01 1 171527109 171527109 C G PRRC2C Nonsense_Mutation p.S1951* 0.23 TCGA-A2-A0T3-01 1 196884227 196884227 C A CFHR4 Missense_Mutation p.T499K 0.21 deleterious(0.04) possibly_damaging(0.454) TCGA-A2-A0T3-01 1 52811772 52811772 C T ZFYVE9 Missense_Mutation p.S1386L 0.68 tolerated(0.06) benign(0.228) TCGA-A2-A0T3-01 1 79358816 79358816 A G ELTD1 Missense_Mutation p.L603S 0.20 deleterious(0) probably_damaging(0.925) TCGA-A2-A0T3-01 20 1559200 1559200 C A RP4-576H24.4 Missense_Mutation p.A72S 0.43 tolerated(0.09) benign(0.005) TCGA-A2-A0T3-01 21 34127560 34127560 C T PAXBP1 Silent p.S496S 0.29 TCGA-A2-A0T3-01 22 19348811 19348811 T C HIRA Silent p.A678A 0.20 TCGA-A2-A0T3-01 22 20843516 20843516 C T KLHL22 5'UTR 0.18 TCGA-A2-A0T3-01 2 197709278 197709278 G A PGAP1 Silent p.S769S 0.33 TCGA-A2-A0T3-01 2 238290029 238290029 C A COL6A3 Nonsense_Mutation p.E476* 0.28 TCGA-A2-A0T3-01 2 29366667 29366667 C A CLIP4 Silent p.I247I 0.36 TCGA-A2-A0T3-01 3 138669301 138669301 C T C3orf72 Missense_Mutation p.R139W 0.10 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-A2-A0T3-01 3 183442226 183442226 G C YEATS2 Missense_Mutation p.G186A 0.26 tolerated(0.35) benign(0.004) TCGA-A2-A0T3-01 3 9547779 9547779 G T LHFPL4 Nonsense_Mutation p.S172* 0.22 TCGA-A2-A0T3-01 4 154636599 154636599 G T RNF175 Intron 0.23 TCGA-A2-A0T3-01 4 165878325 165878325 G A FAM218A Missense_Mutation p.G51S 0.13 tolerated_low_confidence(0.52) probably_damaging(0.935) TCGA-A2-A0T3-01 5 121402333 121402333 C A LOX 3'UTR 0.34 TCGA-A2-A0T3-01 5 145718682 145718682 G C POU4F3 Missense_Mutation p.A3P 0.38 deleterious_low_confidence(0) benign(0.032) TCGA-A2-A0T3-01 6 100841453 100841453 C T SIM1 Missense_Mutation p.A494T 0.15 tolerated_low_confidence(0.05) benign(0.003) TCGA-A2-A0T3-01 6 160183182 160183182 G C ACAT2 Intron 0.23 TCGA-A2-A0T3-01 7 112112910 112112910 C T IFRD1 Silent p.F420F 0.47 TCGA-A2-A0T3-01 7 137092668 137092668 G A DGKI Missense_Mutation p.A966V 0.20 deleterious(0) probably_damaging(0.959) TCGA-A2-A0T3-01 7 26686000 26686001 - AA C7orf71 Frame_Shift_Ins p.A119Kfs*18 0.14 TCGA-A2-A0T3-01 9 104432629 104432629 C A GRIN3A Missense_Mutation p.A689S 0.47 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T3-01 9 34976648 34976648 G T KIAA1045 Missense_Mutation p.A254S 0.24 tolerated(0.17) benign(0.057) TCGA-A2-A0T3-01 9 5892543 5892543 G A MLANA Silent p.T23T 0.28 TCGA-A2-A0T3-01 X 100911424 100911424 C T ARMCX2 Missense_Mutation p.G384D 0.39 tolerated(0.12) probably_damaging(0.997) TCGA-A2-A0T3-01 X 123615786 123615786 C A TENM1 Missense_Mutation p.A1249S 0.34 deleterious(0.05) possibly_damaging(0.902) TCGA-A2-A0T3-01 X 129063681 129063681 T C UTP14A 3'UTR 0.45 TCGA-A2-A0T3-01 X 41075185 41075185 T C USP9X Silent p.L1789L 0.35 TCGA-A2-A0T3-01 X 8998340 8998340 G A FAM9B Silent p.N81N 0.29 TCGA-A2-A0T3-01 X 9000382 9000382 C A FAM9B Missense_Mutation p.G50V 0.31 deleterious(0) probably_damaging(0.998) TCGA-A2-A0T4-01 10 101150099 101150099 C G CNNM1 Missense_Mutation p.T904R 0.26 tolerated_low_confidence(0.24) benign(0.059) TCGA-A2-A0T4-01 11 10503734 10503734 C T AMPD3 Missense_Mutation p.P193L 0.36 tolerated(0.5) benign(0.001) TCGA-A2-A0T4-01 11 18194859 18194859 A T MRGPRX4 Missense_Mutation p.E19V 0.26 tolerated(0.07) benign(0.002) TCGA-A2-A0T4-01 11 64574649 64574649 A C MEN1 Splice_Site p.X280_splice 0.31 TCGA-A2-A0T4-01 11 65825830 65825830 C T SF3B2 Missense_Mutation p.S307L 0.26 tolerated(0.17) benign(0) TCGA-A2-A0T4-01 11 68548116 68548116 G C CPT1A Missense_Mutation p.L484V 0.34 tolerated(0.11) benign(0.036) TCGA-A2-A0T4-01 11 76171098 76171098 C G C11orf30 Silent p.V180V 0.21 TCGA-A2-A0T4-01 11 76171125 76171125 C T C11orf30 Silent p.V189V 0.21 TCGA-A2-A0T4-01 12 122962990 122962990 T G ZCCHC8 Intron 0.86 TCGA-A2-A0T4-01 12 4440473 4440473 A T C12orf5 Missense_Mutation p.K20N 0.03 deleterious(0.01) possibly_damaging(0.714) TCGA-A2-A0T4-01 14 69256739 69256741 GAT - ZFP36L1 In_Frame_Del p.I176del 0.36 TCGA-A2-A0T4-01 15 75341501 75341501 C T PPCDC Silent p.A180A 0.27 TCGA-A2-A0T4-01 16 3073329 3073331 CTC - HCFC1R1 In_Frame_Del p.E62del 0.13 TCGA-A2-A0T4-01 16 68862179 68862180 - T CDH1 Frame_Shift_Ins p.E757* 0.21 TCGA-A2-A0T4-01 17 74735072 74735072 C G MFSD11 Missense_Mutation p.T50S 0.27 tolerated(0.1) possibly_damaging(0.685) TCGA-A2-A0T4-01 1 151748589 151748589 C T TDRKH Silent p.K400K 0.15 TCGA-A2-A0T4-01 1 151774034 151774034 G T LINGO4 Missense_Mutation p.P383T 0.30 deleterious(0) probably_damaging(0.992) TCGA-A2-A0T4-01 1 78414918 78414918 A G FUBP1 Silent p.A616A 0.38 TCGA-A2-A0T4-01 2 102626044 102626044 T A IL1R2 Missense_Mutation p.F30I 0.24 tolerated(0.39) benign(0.038) TCGA-A2-A0T4-01 2 170060647 170060647 C A LRP2 Missense_Mutation p.R2617L 0.21 probably_damaging(1) TCGA-A2-A0T4-01 2 220337000 220337000 G T SPEG Missense_Mutation p.G1296V 0.20 probably_damaging(1) TCGA-A2-A0T4-01 2 32460481 32460481 A G NLRC4 Missense_Mutation p.I924T 0.18 deleterious(0.03) benign(0.079) TCGA-A2-A0T4-01 3 147114016 147114016 G A ZIC4 Missense_Mutation p.T154M 0.36 tolerated(0.18) probably_damaging(0.99) TCGA-A2-A0T4-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.16 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A0T4-01 3 46399979 46399979 C T CCR2 Intron 0.29 TCGA-A2-A0T4-01 4 2717831 2717831 G C FAM193A Missense_Mutation p.R1235T 0.22 deleterious(0) possibly_damaging(0.496) TCGA-A2-A0T4-01 5 135186164 135186164 C T SLC25A48 Silent p.R47R 0.27 TCGA-A2-A0T4-01 5 140812078 140812078 C A PCDHGA12 Silent p.P584P 0.38 TCGA-A2-A0T4-01 5 169135223 169135223 C T DOCK2 Silent p.S478S 0.14 TCGA-A2-A0T4-01 6 52129411 52129411 G C MCM3 Missense_Mutation p.S846C 0.25 deleterious(0) possibly_damaging(0.77) TCGA-A2-A0T4-01 6 52129448 52129448 G C MCM3 Missense_Mutation p.L834V 0.23 tolerated(0.08) benign(0.134) TCGA-A2-A0T4-01 6 55441924 55441924 G C HMGCLL1 Silent p.V50V 0.47 TCGA-A2-A0T4-01 6 55443840 55443840 G A HMGCLL1 Missense_Mutation p.P5L 0.56 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-A2-A0T4-01 6 55443841 55443841 G C HMGCLL1 Missense_Mutation p.P5A 0.57 deleterious_low_confidence(0.01) benign(0.076) TCGA-A2-A0T4-01 7 11581237 11581237 C T THSD7A Missense_Mutation p.R544H 0.24 tolerated(0.75) benign(0.006) TCGA-A2-A0T4-01 7 12373131 12373131 C T VWDE Missense_Mutation p.R1573H 0.34 deleterious(0.04) possibly_damaging(0.534) TCGA-A2-A0T4-01 7 124387024 124387024 G A GPR37 Missense_Mutation p.A466V 0.26 tolerated(0.09) probably_damaging(1) TCGA-A2-A0T4-01 7 12728422 12728422 A G ARL4A Silent p.K181K 0.24 TCGA-A2-A0T4-01 7 44802938 44802938 G A ZMIZ2 Missense_Mutation p.V596M 0.24 tolerated(0.08) possibly_damaging(0.883) TCGA-A2-A0T4-01 9 116794996 116794996 C T ZNF618 Nonsense_Mutation p.Q293* 0.16 TCGA-A2-A0T4-01 9 34655292 34655292 C T IL11RA Silent p.C26C 0.25 TCGA-A2-A0T4-01 X 16716365 16716365 A - CTPS2 Frame_Shift_Del p.I145Lfs*60 0.15 TCGA-A2-A0T4-01 X 44896936 44896936 T G KDM6A Splice_Site p.X218_splice 0.27 TCGA-A2-A0T4-01 X 75392998 75392998 G A PBDC1 Missense_Mutation p.E9K 0.15 tolerated_low_confidence(0.1) benign(0.012) TCGA-A2-A0T4-01 X 91138145 91138145 T G PCDH11X Intron 0.12 TCGA-A2-A0T5-01 10 8111546 8111547 - TACT GATA3 Frame_Shift_Ins p.K347Lfs*7 0.34 TCGA-A2-A0T5-01 11 6413025 6413025 G A SMPD1 Missense_Mutation p.G244R 0.32 deleterious(0) probably_damaging(1) TCGA-A2-A0T5-01 11 94532825 94532825 C T AMOTL1 Missense_Mutation p.R157C 0.40 deleterious(0) probably_damaging(0.997) TCGA-A2-A0T5-01 12 6981575 6981575 G C SPSB2 Missense_Mutation p.P164R 0.28 deleterious(0) possibly_damaging(0.702) TCGA-A2-A0T5-01 15 66206100 66206100 C T MEGF11 Missense_Mutation p.M895I 0.23 tolerated(0.55) benign(0.004) TCGA-A2-A0T5-01 15 72492076 72492076 T C PKM Missense_Mutation p.K504R 0.24 tolerated(0.21) benign(0.017) TCGA-A2-A0T5-01 15 81180038 81180038 C - KIAA1199 Frame_Shift_Del p.P268Lfs*5 0.31 TCGA-A2-A0T5-01 16 1257820 1257820 C T CACNA1H Silent p.F1038F 0.17 TCGA-A2-A0T5-01 16 67070629 67070638 TATGTCGACT - CBFB Frame_Shift_Del p.Y85* 0.46 TCGA-A2-A0T5-01 17 16029456 16029457 - T NCOR1 Frame_Shift_Ins p.T525Nfs*11 0.24 TCGA-A2-A0T5-01 17 72842998 72842998 G A GRIN2C Missense_Mutation p.T688M 0.39 deleterious(0) probably_damaging(1) TCGA-A2-A0T5-01 1 200842891 200842891 G A GPR25 Silent p.S242S 0.20 TCGA-A2-A0T5-01 22 26829825 26829825 C A ASPHD2 Missense_Mutation p.Q82K 0.17 tolerated_low_confidence(0.05) benign(0.301) TCGA-A2-A0T5-01 22 41573243 41573243 A C EP300 Missense_Mutation p.Q1843P 0.32 benign(0.003) TCGA-A2-A0T5-01 4 123333833 123333833 C T ADAD1 Missense_Mutation p.P373L 0.31 deleterious(0.04) benign(0.077) TCGA-A2-A0T5-01 5 167937620 167937620 C T RARS Missense_Mutation p.R461C 0.24 deleterious(0) probably_damaging(0.996) TCGA-A2-A0T5-01 6 25983610 25983610 A T TRIM38 Missense_Mutation p.M365L 0.29 tolerated(1) benign(0.001) TCGA-A2-A0T6-01 10 121196345 121196345 C T GRK5 Silent p.T307T 0.10 TCGA-A2-A0T6-01 10 14816537 14816537 C T FAM107B Silent p.Q42Q 0.30 TCGA-A2-A0T6-01 11 63438879 63438879 G C ATL3 5'UTR 0.28 TCGA-A2-A0T6-01 11 65339159 65339159 G A SSSCA1 Missense_Mutation p.R185H 0.20 deleterious(0.03) possibly_damaging(0.808) TCGA-A2-A0T6-01 12 55248355 55248355 C T MUCL1 5'UTR 0.28 TCGA-A2-A0T6-01 13 97485222 97485222 C T HS6ST3 Missense_Mutation p.R396C 0.23 deleterious(0.01) benign(0.234) TCGA-A2-A0T6-01 15 67479838 67479838 C T SMAD3 Missense_Mutation p.A382V 0.29 deleterious(0.04) possibly_damaging(0.523) TCGA-A2-A0T6-01 16 68867233 68867234 - TGAT CDH1 Frame_Shift_Ins p.S829* 0.37 TCGA-A2-A0T6-01 17 26913109 26913109 T A SPAG5 Missense_Mutation p.E535V 0.30 deleterious(0) probably_damaging(0.999) TCGA-A2-A0T6-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.23 tolerated(0.19) benign(0.022) TCGA-A2-A0T6-01 17 37880219 37880219 T A ERBB2 Missense_Mutation p.L755M 0.28 deleterious(0) probably_damaging(1) TCGA-A2-A0T6-01 17 37880220 37880220 T G ERBB2 Missense_Mutation p.L755W 0.28 deleterious(0) probably_damaging(1) TCGA-A2-A0T6-01 19 40172131 40172131 C A AC093063.3 5'Flank 0.38 TCGA-A2-A0T6-01 1 107691449 107691449 G A NTNG1 Silent p.T78T 0.27 TCGA-A2-A0T6-01 1 215345520 215345520 G A KCNK2 Missense_Mutation p.V273I 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-A2-A0T6-01 20 45985443 45985443 T C ZMYND8 5'Flank 0.26 TCGA-A2-A0T6-01 2 168104724 168104724 C T XIRP2 Silent p.I2274I 0.30 TCGA-A2-A0T6-01 2 9517076 9517076 G A ASAP2 Missense_Mutation p.V596M 0.14 deleterious(0) possibly_damaging(0.869) TCGA-A2-A0T6-01 3 172835417 172835417 C T SPATA16 Silent p.A35A 0.06 TCGA-A2-A0T6-01 3 196736580 196736580 G A MFI2 Silent p.A478A 0.30 TCGA-A2-A0T6-01 5 154317530 154317530 C T GEMIN5 Missense_Mutation p.R55Q 0.45 tolerated(0.12) possibly_damaging(0.662) TCGA-A2-A0T6-01 5 34823772 34823772 A T RAI14 Missense_Mutation p.M612L 0.39 tolerated(0.2) benign(0.001) TCGA-A2-A0T6-01 6 131912472 131912472 G A MED23 Nonsense_Mutation p.Q1223* 0.32 TCGA-A2-A0T6-01 6 28360727 28360727 C T ZSCAN12 Missense_Mutation p.A167T 0.26 tolerated(0.67) benign(0.063) TCGA-A2-A0T6-01 6 37418099 37418099 G A CMTR1 Missense_Mutation p.D173N 0.28 tolerated(0.38) benign(0.001) TCGA-A2-A0T6-01 6 42713328 42713328 C A TBCC Missense_Mutation p.V162F 0.29 deleterious(0.03) benign(0.11) TCGA-A2-A0T6-01 8 55534763 55534763 C T RP1 Silent p.I234I 0.25 TCGA-A2-A0T6-01 9 138676624 138676624 C T KCNT1 Silent p.G1015G 0.31 TCGA-A2-A0T6-01 X 131762942 131762942 T C HS6ST2 Missense_Mutation p.K416R 0.27 tolerated(0.09) benign(0.241) TCGA-A2-A0T7-01 10 99337563 99337563 C T ANKRD2 Nonsense_Mutation p.R59* 0.20 TCGA-A2-A0T7-01 11 108236203 108236203 C T ATM Nonsense_Mutation p.R3047* 0.40 TCGA-A2-A0T7-01 12 41585336 41585336 G A PDZRN4 Missense_Mutation p.R242Q 0.09 deleterious_low_confidence(0.03) benign(0.157) TCGA-A2-A0T7-01 14 80672615 80672619 TATAA - DIO2 Frame_Shift_Del p.Y96Kfs*? 0.28 TCGA-A2-A0T7-01 14 81223281 81223282 - C CEP128 Frame_Shift_Ins p.P857Sfs*2 0.16 TCGA-A2-A0T7-01 15 101565085 101565085 G A LRRK1 Silent p.T715T 0.22 TCGA-A2-A0T7-01 15 22743097 22743097 G C GOLGA6L1 Missense_Mutation p.E494D 0.23 unknown(0) TCGA-A2-A0T7-01 15 35814394 35814394 G A DPH6 Intron 0.24 TCGA-A2-A0T7-01 17 30696435 30696435 C G ZNF207 Missense_Mutation p.P429R 0.18 deleterious_low_confidence(0) unknown(0) TCGA-A2-A0T7-01 18 61071018 61071018 C T VPS4B Missense_Mutation p.V136I 0.15 tolerated(0.23) probably_damaging(0.981) TCGA-A2-A0T7-01 19 57910903 57910903 G A ZNF548 Silent p.T428T 0.24 TCGA-A2-A0T7-01 1 110883275 110883281 CGGCTTT - RBM15 Frame_Shift_Del p.G417Sfs*6 0.19 TCGA-A2-A0T7-01 1 220269535 220269535 C T IARS2 Silent p.N119N 0.16 TCGA-A2-A0T7-01 1 240492411 240492411 G C FMN2 Missense_Mutation p.K1417N 0.15 possibly_damaging(0.62) TCGA-A2-A0T7-01 1 74716374 74716374 G A FPGT-TNNI3K Missense_Mutation p.R199Q 0.07 tolerated(0.08) probably_damaging(0.994) TCGA-A2-A0T7-01 1 89844123 89844123 C A GBP6 Missense_Mutation p.H192Q 0.26 tolerated(1) benign(0.004) TCGA-A2-A0T7-01 20 47989708 47989708 A C KCNB1 Missense_Mutation p.F797V 0.07 tolerated_low_confidence(0.33) benign(0.002) TCGA-A2-A0T7-01 2 114004409 114004409 G T PAX8 Missense_Mutation p.A38D 0.09 deleterious(0) probably_damaging(0.982) TCGA-A2-A0T7-01 2 169764629 169764629 C T G6PC2 3'UTR 0.15 TCGA-A2-A0T7-01 2 3729305 3729305 T C ALLC Splice_Site p.X126_splice 0.16 TCGA-A2-A0T7-01 2 65541304 65541304 C A SPRED2 Splice_Site p.X197_splice 0.08 TCGA-A2-A0T7-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.16 deleterious(0.04) probably_damaging(0.96) TCGA-A2-A0T7-01 3 178952074 178952074 G A PIK3CA Missense_Mutation p.M1043I 0.21 tolerated(0.11) benign(0.054) TCGA-A2-A0T7-01 3 47451454 47451454 C T PTPN23 Silent p.A722A 0.24 TCGA-A2-A0T7-01 3 48629346 48629346 A G COL7A1 Missense_Mutation p.W448R 0.22 unknown(0) TCGA-A2-A0T7-01 4 7770596 7770596 C T AFAP1 Missense_Mutation p.R798Q 0.08 tolerated(0.4) possibly_damaging(0.884) TCGA-A2-A0T7-01 6 152768733 152768733 T C SYNE1 Missense_Mutation p.R1177G 0.11 benign(0.017) TCGA-A2-A0T7-01 6 76751647 76751647 C T IMPG1 Silent p.Q88Q 0.06 TCGA-A2-A0T7-01 7 98775688 98775688 G A KPNA7 Missense_Mutation p.A440V 0.36 tolerated(0.06) benign(0.004) TCGA-A2-A0T7-01 8 25237868 25237868 C T DOCK5 Silent p.Y1328Y 0.07 TCGA-A2-A0T7-01 8 6873414 6873414 A G DEFA3 3'UTR 0.28 TCGA-A2-A0T7-01 X 70324242 70324242 A G CXorf65 Missense_Mutation p.I111T 0.20 tolerated(1) benign(0.002) TCGA-A2-A0YC-01 11 10500150 10500150 C T AMPD3 Missense_Mutation p.P109L 0.10 tolerated(0.34) benign(0.002) TCGA-A2-A0YC-01 11 128354799 128354799 C G ETS1 Missense_Mutation p.D261H 0.06 deleterious(0.01) benign(0.347) TCGA-A2-A0YC-01 15 102346617 102346617 G T OR4F6 Missense_Mutation p.G232V 0.35 deleterious_low_confidence(0.02) benign(0.25) TCGA-A2-A0YC-01 15 33023223 33023223 G C GREM1 Missense_Mutation p.R111P 0.21 deleterious(0) possibly_damaging(0.841) TCGA-A2-A0YC-01 15 33357030 33357030 A G FMN1 Intron 0.07 TCGA-A2-A0YC-01 17 15984026 15984027 - AGGC NCOR1 Frame_Shift_Ins p.Y1065Afs*7 0.49 TCGA-A2-A0YC-01 17 41020729 41020729 C T AOC4P RNA 0.07 TCGA-A2-A0YC-01 19 17937605 17937605 G A JAK3 Missense_Mutation p.H1108Y 0.06 tolerated_low_confidence(0.97) benign(0.002) TCGA-A2-A0YC-01 19 20228851 20228855 ATAAG - ZNF90 Frame_Shift_Del p.I165Rfs*26 0.35 TCGA-A2-A0YC-01 19 33639783 33639783 G A WDR88 Missense_Mutation p.A216T 0.07 tolerated(0.05) possibly_damaging(0.73) TCGA-A2-A0YC-01 1 24409111 24409111 G A MYOM3 Silent p.T688T 0.23 TCGA-A2-A0YC-01 1 46872015 46872015 T C FAAH Missense_Mutation p.V309A 0.13 deleterious(0) benign(0.339) TCGA-A2-A0YC-01 20 56285577 56285577 G A PMEPA1 5'Flank 0.33 TCGA-A2-A0YC-01 22 26291174 26291174 T A MYO18B Missense_Mutation p.L1532H 0.47 deleterious(0) probably_damaging(1) TCGA-A2-A0YC-01 22 28195033 28195033 G A MN1 Missense_Mutation p.P500L 0.31 probably_damaging(0.987) TCGA-A2-A0YC-01 22 40661511 40661511 G T TNRC6B Missense_Mutation p.G426V 0.27 deleterious(0) possibly_damaging(0.675) TCGA-A2-A0YC-01 2 113514535 113514535 G T CKAP2L Missense_Mutation p.P138H 0.36 deleterious(0.01) possibly_damaging(0.774) TCGA-A2-A0YC-01 2 224462052 224462052 C G SCG2 3'UTR 0.10 TCGA-A2-A0YC-01 2 25046196 25046196 A G ADCY3 Missense_Mutation p.I922T 0.08 deleterious(0.03) possibly_damaging(0.494) TCGA-A2-A0YC-01 2 63665042 63665042 T A WDPCP Intron 0.35 TCGA-A2-A0YC-01 3 12447485 12447485 C G PPARG Missense_Mutation p.L242V 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-A2-A0YC-01 3 137750129 137750129 G T CLDN18 3'UTR 0.61 TCGA-A2-A0YC-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-A2-A0YC-01 4 128951784 128951784 G C C4orf29 Missense_Mutation p.G400R 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-A2-A0YC-01 5 114515834 114515834 C A TRIM36 5'UTR 0.38 TCGA-A2-A0YC-01 5 140739877 140739877 C T PCDHGB2 Missense_Mutation p.R59W 0.06 deleterious(0.05) benign(0.056) TCGA-A2-A0YC-01 5 140903779 140903787 CACCTGTCT - DIAPH1 In_Frame_Del p.E1195_G1197del 0.36 TCGA-A2-A0YC-01 5 171765985 171765985 G A SH3PXD2B Silent p.R708R 0.07 TCGA-A2-A0YC-01 5 94027917 94027917 C T ANKRD32 Missense_Mutation p.S884L 0.35 tolerated(0.09) probably_damaging(0.993) TCGA-A2-A0YC-01 7 48311819 48311819 C T ABCA13 Silent p.N852N 0.10 TCGA-A2-A0YC-01 8 108297075 108297075 C A ANGPT1 Missense_Mutation p.G347V 0.29 deleterious(0.01) possibly_damaging(0.776) TCGA-A2-A0YC-01 8 98900392 98900392 G A MATN2 Missense_Mutation p.E22K 0.28 tolerated(0.69) benign(0.023) TCGA-A2-A0YC-01 X 119077497 119077497 C T NKAP Silent p.S24S 0.35 TCGA-A2-A0YC-01 X 137793117 137793117 G T FGF13 Intron 0.35 TCGA-A2-A0YC-01 X 74520699 74520699 C A UPRT Intron 0.09 TCGA-A2-A0YD-01 10 103920079 103920079 G C NOLC1 Missense_Mutation p.E360Q 0.19 deleterious_low_confidence(0.03) benign(0.403) TCGA-A2-A0YD-01 10 5956232 5956232 G A FBXO18 Missense_Mutation p.G517S 0.16 deleterious(0) probably_damaging(1) TCGA-A2-A0YD-01 10 77160012 77160012 C T ZNF503 Missense_Mutation p.G146S 0.37 tolerated(1) benign(0.017) TCGA-A2-A0YD-01 11 105845126 105845126 G C GRIA4 Missense_Mutation p.L833F 0.04 tolerated(0.09) possibly_damaging(0.588) TCGA-A2-A0YD-01 11 1104049 1104049 C T MUC2 Missense_Mutation p.S2747L 0.29 unknown(0) TCGA-A2-A0YD-01 11 118967822 118967822 C T DPAGT1 Intron 0.06 TCGA-A2-A0YD-01 11 1254322 1254322 G A MUC5B Silent p.L715L 0.26 TCGA-A2-A0YD-01 11 125830747 125830747 G A CDON 3'UTR 0.30 TCGA-A2-A0YD-01 11 14096906 14096906 A C SPON1 RNA 0.12 TCGA-A2-A0YD-01 11 18636609 18636609 G A SPTY2D1 Silent p.S404S 0.17 TCGA-A2-A0YD-01 11 489482 489482 C T PTDSS2 Missense_Mutation p.R313C 0.19 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YD-01 11 55873066 55873066 C A OR8H2 Missense_Mutation p.P183Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-A2-A0YD-01 11 5799613 5799613 G A OR52N5 Silent p.T84T 0.40 TCGA-A2-A0YD-01 11 60885726 60885726 G A CD5 Missense_Mutation p.M58I 0.14 tolerated(0.1) benign(0.002) TCGA-A2-A0YD-01 11 92533694 92533694 G A FAT3 Silent p.V2505V 0.28 TCGA-A2-A0YD-01 12 130892283 130892283 G A RIMBP2 Silent p.N971N 0.15 TCGA-A2-A0YD-01 12 57638000 57638000 G A STAC3 Silent p.I289I 0.24 TCGA-A2-A0YD-01 13 103514694 103514694 G A BIVM-ERCC5 Missense_Mutation p.E825K 0.33 tolerated_low_confidence(0.07) probably_damaging(0.956) TCGA-A2-A0YD-01 13 21955625 21955625 G A ZDHHC20 Silent p.D335D 0.17 TCGA-A2-A0YD-01 14 25044494 25044494 C T CTSG Silent p.L60L 0.18 TCGA-A2-A0YD-01 14 51345460 51345460 C A ABHD12B Intron 0.24 TCGA-A2-A0YD-01 14 51706956 51706956 G A TMX1 5'UTR 0.14 TCGA-A2-A0YD-01 14 69387787 69387787 G A ACTN1 Silent p.N92N 0.48 TCGA-A2-A0YD-01 14 93673476 93673476 A T UBR7 5'UTR 0.56 TCGA-A2-A0YD-01 15 64982692 64982692 G A OAZ2 Silent p.I78I 0.07 TCGA-A2-A0YD-01 15 86198828 86198828 G A AKAP13 Missense_Mutation p.E1519K 0.26 deleterious(0.01) possibly_damaging(0.857) TCGA-A2-A0YD-01 16 2159446 2159446 G A PKD1 Nonsense_Mutation p.Q1908* 0.17 TCGA-A2-A0YD-01 16 30094768 30094768 G C PPP4C Missense_Mutation p.Q119H 0.39 deleterious(0) possibly_damaging(0.607) TCGA-A2-A0YD-01 16 48209200 48209200 G C ABCC11 Missense_Mutation p.Q1223E 0.30 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YD-01 16 68846043 68846043 C - CDH1 Frame_Shift_Del p.P339Lfs*17 0.39 TCGA-A2-A0YD-01 16 69349941 69349941 G A VPS4A Missense_Mutation p.E18K 0.28 tolerated(0.11) benign(0.023) TCGA-A2-A0YD-01 16 70891628 70891628 T C HYDIN Missense_Mutation p.N4092S 0.11 possibly_damaging(0.801) TCGA-A2-A0YD-01 16 88926159 88926159 G A TRAPPC2L Splice_Site p.X98_splice 0.22 TCGA-A2-A0YD-01 17 42170844 42170844 C G HDAC5 Missense_Mutation p.E123Q 0.14 tolerated(0.05) benign(0.013) TCGA-A2-A0YD-01 17 72786402 72786402 G A TMEM104 Missense_Mutation p.E105K 0.15 tolerated(0.35) benign(0.022) TCGA-A2-A0YD-01 18 21114508 21114508 C T NPC1 Missense_Mutation p.V1165M 0.28 deleterious(0) probably_damaging(1) TCGA-A2-A0YD-01 19 22272380 22272380 C G ZNF257 3'UTR 0.28 TCGA-A2-A0YD-01 1 11017751 11017751 C T C1orf127 Silent p.L205L 0.18 TCGA-A2-A0YD-01 1 145439000 145439000 T C TXNIP Silent p.T66T 0.39 TCGA-A2-A0YD-01 1 151021187 151021187 C T C1orf56 Silent p.P288P 0.14 TCGA-A2-A0YD-01 1 155922455 155922455 G A ARHGEF2 Missense_Mutation p.R650C 0.07 deleterious(0) probably_damaging(0.964) TCGA-A2-A0YD-01 1 158549364 158549364 G A OR10X1 Missense_Mutation p.S109L 0.08 deleterious(0) benign(0.025) TCGA-A2-A0YD-01 1 160970527 160970527 G C F11R Missense_Mutation p.I94M 0.16 deleterious(0) probably_damaging(0.974) TCGA-A2-A0YD-01 1 165667703 165667703 G A ALDH9A1 Silent p.V31V 0.16 TCGA-A2-A0YD-01 1 177898896 177898896 G C SEC16B 3'UTR 0.12 TCGA-A2-A0YD-01 1 200818423 200818423 G C CAMSAP2 Missense_Mutation p.E842D 0.17 tolerated(0.22) benign(0.012) TCGA-A2-A0YD-01 1 208255805 208255805 C T PLXNA2 Missense_Mutation p.V783M 0.18 deleterious(0.03) benign(0.426) TCGA-A2-A0YD-01 1 20945149 20945149 C - CDA 3'UTR 0.26 TCGA-A2-A0YD-01 1 226836376 226836376 C T ITPKB Missense_Mutation p.A677T 0.11 tolerated(0.07) probably_damaging(0.989) TCGA-A2-A0YD-01 1 22987403 22987403 G A C1QB Missense_Mutation p.G96S 0.20 deleterious(0) probably_damaging(1) TCGA-A2-A0YD-01 1 249119242 249119242 C T SH3BP5L 5'UTR 0.23 TCGA-A2-A0YD-01 1 78444657 78444657 G T FUBP1 Missense_Mutation p.S11Y 0.17 deleterious(0.01) benign(0.395) TCGA-A2-A0YD-01 20 30064186 30064186 G A REM1 5'UTR 0.16 TCGA-A2-A0YD-01 20 30585089 30585089 C T XKR7 Silent p.I523I 0.14 TCGA-A2-A0YD-01 20 3096074 3096074 C T UBOX5 Missense_Mutation p.E432K 0.21 deleterious(0.01) possibly_damaging(0.597) TCGA-A2-A0YD-01 20 36361374 36361374 C T CTNNBL1 Missense_Mutation p.R42W 0.16 deleterious(0.02) benign(0.252) TCGA-A2-A0YD-01 20 47882678 47882678 G A ZNFX1 Silent p.L666L 0.29 TCGA-A2-A0YD-01 21 47697588 47697588 C T MCM3AP Missense_Mutation p.E571K 0.14 deleterious(0.01) possibly_damaging(0.573) TCGA-A2-A0YD-01 22 20102144 20102144 C T TRMT2A Missense_Mutation p.D396N 0.29 tolerated(0.07) benign(0.035) TCGA-A2-A0YD-01 2 201305383 201305383 G A SPATS2L Missense_Mutation p.E222K 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-A2-A0YD-01 2 242163188 242163188 G A ANO7 Missense_Mutation p.E896K 0.18 deleterious(0.01) possibly_damaging(0.52) TCGA-A2-A0YD-01 2 242163194 242163194 G A ANO7 Missense_Mutation p.E898K 0.19 tolerated(0.32) benign(0.009) TCGA-A2-A0YD-01 2 27465222 27465222 G A CAD Missense_Mutation p.G2050E 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-A2-A0YD-01 2 39417556 39417556 G A CDKL4 Missense_Mutation p.S181L 0.32 deleterious(0.05) benign(0.008) TCGA-A2-A0YD-01 2 71211878 71211878 G A ANKRD53 Silent p.S347S 0.13 TCGA-A2-A0YD-01 3 160804459 160804459 C G B3GALNT1 Silent p.L28L 0.36 TCGA-A2-A0YD-01 3 197765756 197765775 TCAGCAACCCAACCACCTCG - LMLN 3'UTR 0.34 TCGA-A2-A0YD-01 3 39185751 39185751 G A CSRNP1 Silent p.I219I 0.18 TCGA-A2-A0YD-01 3 69998295 69998295 C T MITF Missense_Mutation p.P286S 0.12 tolerated(0.1) benign(0.037) TCGA-A2-A0YD-01 5 13792167 13792167 C T DNAH5 Missense_Mutation p.R2795Q 0.18 possibly_damaging(0.553) TCGA-A2-A0YD-01 5 14304601 14304601 C A TRIO Missense_Mutation p.A467D 0.09 possibly_damaging(0.468) TCGA-A2-A0YD-01 5 156817668 156817671 AAGA - CYFIP2 Frame_Shift_Del p.K1170Mfs*4 0.26 TCGA-A2-A0YD-01 5 56178672 56178673 - A MAP3K1 Frame_Shift_Ins p.I1216Nfs*23 0.35 TCGA-A2-A0YD-01 6 147556386 147556386 C T STXBP5 Silent p.L83L 0.07 TCGA-A2-A0YD-01 6 151673244 151673244 G A AKAP12 Missense_Mutation p.E1240K 0.24 tolerated(0.16) benign(0.102) TCGA-A2-A0YD-01 7 5024587 5024587 G A RBAK-RBAKDN 5'UTR 0.16 TCGA-A2-A0YD-01 7 71868340 71868340 C T CALN1 Silent p.E5E 0.25 TCGA-A2-A0YD-01 8 113988068 113988068 C G CSMD3 Missense_Mutation p.R447T 0.29 deleterious(0.03) benign(0.025) TCGA-A2-A0YD-01 9 121929944 121929944 G A BRINP1 Silent p.S568S 0.15 TCGA-A2-A0YD-01 9 135975880 135975880 C A RALGDS Intron 0.28 TCGA-A2-A0YD-01 9 139686770 139686770 C G TMEM141 Silent p.L91L 0.17 TCGA-A2-A0YD-01 9 139690812 139690812 G C RP11-216L13.17 Intron 0.25 TCGA-A2-A0YD-01 9 139690880 139690880 G T CCDC183 Nonsense_Mutation p.E11* 0.17 TCGA-A2-A0YD-01 9 139699835 139699835 G A CCDC183 Missense_Mutation p.E292K 0.19 deleterious(0.02) benign(0.164) TCGA-A2-A0YD-01 9 139700996 139700996 G C CCDC183 Missense_Mutation p.E384Q 0.28 tolerated(0.15) possibly_damaging(0.842) TCGA-A2-A0YD-01 9 34726876 34726876 C T FAM205A Missense_Mutation p.E121K 0.33 tolerated(0.18) benign(0.004) TCGA-A2-A0YD-01 9 77300402 77300402 C T RORB Silent p.I416I 0.14 TCGA-A2-A0YD-01 X 122551281 122551281 C G GRIA3 Missense_Mutation p.T510S 0.20 tolerated(0.12) benign(0.024) TCGA-A2-A0YD-01 X 140969318 140969318 C G MAGEC3 Missense_Mutation p.I215M 0.26 deleterious(0.04) possibly_damaging(0.639) TCGA-A2-A0YD-01 X 3242309 3242309 C T MXRA5 Missense_Mutation p.G473S 0.14 tolerated(1) benign(0.002) TCGA-A2-A0YD-01 X 38146191 38146191 C G RPGR Missense_Mutation p.E687D 0.18 unknown(0) TCGA-A2-A0YD-01 X 54143207 54143207 C G FAM120C Missense_Mutation p.E695Q 0.28 deleterious(0) probably_damaging(0.972) TCGA-A2-A0YE-01 10 102748742 102748742 G A C10orf2 Missense_Mutation p.E259K 0.53 tolerated(0.06) possibly_damaging(0.81) TCGA-A2-A0YE-01 11 125445240 125445240 C T EI24 Nonsense_Mutation p.R42* 0.74 TCGA-A2-A0YE-01 11 62574965 62574965 G T STX5 Silent p.I348I 0.16 TCGA-A2-A0YE-01 11 64786087 64786087 G T ARL2 Missense_Mutation p.R74L 0.16 deleterious(0) probably_damaging(0.986) TCGA-A2-A0YE-01 11 64875774 64875774 C T VPS51 Silent p.R277R 0.36 TCGA-A2-A0YE-01 12 56355434 56355434 T C PMEL Silent p.T53T 0.41 TCGA-A2-A0YE-01 12 7922700 7922700 G C NANOGNB Missense_Mutation p.R75P 0.19 tolerated(0.08) benign(0.036) TCGA-A2-A0YE-01 12 81102680 81102680 G T MYF6 Missense_Mutation p.D224Y 0.39 deleterious(0) probably_damaging(0.993) TCGA-A2-A0YE-01 13 48934162 48934162 T G RB1 Nonsense_Mutation p.L206* 0.68 TCGA-A2-A0YE-01 14 104639413 104639413 G A KIF26A Missense_Mutation p.R507K 0.36 tolerated(1) benign(0.001) TCGA-A2-A0YE-01 14 104639414 104639414 G A KIF26A Silent p.R507R 0.37 TCGA-A2-A0YE-01 14 105617992 105617992 G A JAG2 Missense_Mutation p.S375L 0.33 deleterious(0.03) benign(0.045) TCGA-A2-A0YE-01 14 24567593 24567601 CAGGGTAAC - PCK2 Splice_Site p.X154_splice 0.66 TCGA-A2-A0YE-01 14 74946861 74946861 C T NPC2 3'UTR 0.20 TCGA-A2-A0YE-01 15 40512993 40512993 C T BUB1B 3'UTR 0.49 TCGA-A2-A0YE-01 16 30780540 30780540 A G RNF40 Missense_Mutation p.T761A 0.29 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YE-01 16 3900838 3900839 - ATTCCTGGGC CREBBP Frame_Shift_Ins p.I86Mfs*29 0.08 TCGA-A2-A0YE-01 16 4933140 4933140 G A PPL 3'UTR 0.38 TCGA-A2-A0YE-01 16 89940218 89940218 C A TCF25 Missense_Mutation p.P48H 0.53 deleterious(0.04) benign(0.002) TCGA-A2-A0YE-01 17 34803388 34803388 C T TBC1D3G Missense_Mutation p.R144H 0.10 tolerated(0.1) benign(0.001) TCGA-A2-A0YE-01 17 37371458 37371458 G T STAC2 Silent p.V204V 0.29 TCGA-A2-A0YE-01 17 7578445 7578445 A - TP53 Frame_Shift_Del p.I162Tfs*8 0.55 TCGA-A2-A0YE-01 18 19995673 19995673 G A CTAGE1 Missense_Mutation p.P701L 0.71 tolerated(0.07) benign(0.003) TCGA-A2-A0YE-01 19 39018370 39018370 G A RYR1 Silent p.E3590E 0.10 TCGA-A2-A0YE-01 19 48785718 48785718 G A ZNF114 Missense_Mutation p.V34M 0.51 deleterious(0) possibly_damaging(0.867) TCGA-A2-A0YE-01 1 167825465 167825465 G C ADCY10 Missense_Mutation p.N703K 0.31 tolerated(0.91) benign(0.002) TCGA-A2-A0YE-01 1 39463917 39463917 C T AKIRIN1 Nonsense_Mutation p.Q99* 0.31 TCGA-A2-A0YE-01 20 50701502 50701502 C T ZFP64 Missense_Mutation p.R511H 0.42 tolerated(0.06) probably_damaging(0.999) TCGA-A2-A0YE-01 20 62327253 62327253 A C RTEL1 3'UTR 0.20 TCGA-A2-A0YE-01 3 167747569 167747569 G A GOLIM4 Missense_Mutation p.R478W 0.43 deleterious(0) probably_damaging(0.961) TCGA-A2-A0YE-01 3 190986180 190986180 T A UTS2B 3'UTR 0.82 TCGA-A2-A0YE-01 3 49055932 49055932 G T DALRD3 Silent p.G22G 0.15 TCGA-A2-A0YE-01 3 52442611 52442611 C T BAP1 Missense_Mutation p.G45E 0.64 deleterious(0) probably_damaging(1) TCGA-A2-A0YE-01 3 89156817 89156817 C T EPHA3 5'UTR 0.72 TCGA-A2-A0YE-01 4 103966075 103966075 A - SLC9B2 Frame_Shift_Del p.F323Sfs*27 0.52 TCGA-A2-A0YE-01 4 84026091 84026091 G A PLAC8 Silent p.S67S 0.65 TCGA-A2-A0YE-01 5 135692614 135692614 G A TRPC7 Silent p.Y154Y 0.09 TCGA-A2-A0YE-01 5 178548677 178548677 G A ADAMTS2 Missense_Mutation p.R1055W 0.12 deleterious(0.02) possibly_damaging(0.462) TCGA-A2-A0YE-01 6 31431422 31431422 G T HCP5 RNA 0.43 TCGA-A2-A0YE-01 6 32940655 32940655 C A BRD2 5'UTR 0.08 TCGA-A2-A0YE-01 6 94120423 94120423 C A EPHA7 Nonsense_Mutation p.E210* 0.14 TCGA-A2-A0YE-01 7 148506190 148506190 G A EZH2 Missense_Mutation p.T723I 0.49 deleterious(0.02) benign(0.064) TCGA-A2-A0YE-01 7 54636963 54636963 C T VSTM2A 3'UTR 0.16 TCGA-A2-A0YE-01 7 5978378 5978378 C G RSPH10B Missense_Mutation p.G614A 0.79 tolerated(0.07) possibly_damaging(0.744) TCGA-A2-A0YE-01 8 145649456 145649456 G A VPS28 Silent p.P172P 0.23 TCGA-A2-A0YE-01 8 38827055 38827055 C T PLEKHA2 Silent p.L344L 0.24 TCGA-A2-A0YE-01 9 34661484 34661484 C A IL11RA Missense_Mutation p.P420T 0.60 deleterious_low_confidence(0.02) benign(0.307) TCGA-A2-A0YF-01 10 108427518 108427518 C T SORCS1 Silent p.P744P 0.27 TCGA-A2-A0YF-01 11 124967604 124967604 G A TMEM218 Silent p.V82V 0.73 TCGA-A2-A0YF-01 11 67371673 67371673 G A C11orf72 3'UTR 0.21 TCGA-A2-A0YF-01 11 67371715 67371715 G A C11orf72 3'UTR 0.23 TCGA-A2-A0YF-01 12 344336 344336 G A SLC6A13 Nonsense_Mutation p.R251* 0.05 TCGA-A2-A0YF-01 15 100331916 100331916 C A AC090825.1 5'Flank 0.26 TCGA-A2-A0YF-01 16 10989579 10989579 A T CIITA Missense_Mutation p.M85L 0.07 tolerated(0.06) benign(0.008) TCGA-A2-A0YF-01 16 24567190 24567190 C T RBBP6 Silent p.F162F 0.23 TCGA-A2-A0YF-01 16 67645853 67645854 - TAC CTCF Intron p.G261delinsVR 0.69 TCGA-A2-A0YF-01 17 40947026 40947026 C G WNK4 Missense_Mutation p.L863V 0.04 tolerated(0.12) unknown(0) TCGA-A2-A0YF-01 17 43592232 43592232 G A LRRC37A4P RNA 0.30 TCGA-A2-A0YF-01 18 71816295 71816296 TG - TIMM21 Frame_Shift_Del p.V85Afs*54 0.28 TCGA-A2-A0YF-01 19 11727643 11727643 G T ZNF627 Missense_Mutation p.V109F 0.39 deleterious(0.01) probably_damaging(0.942) TCGA-A2-A0YF-01 19 20308876 20308877 AA - ZNF486 Frame_Shift_Del p.K453Efs*51 0.12 TCGA-A2-A0YF-01 19 3633459 3633460 - G PIP5K1C Frame_Shift_Ins p.A661Gfs*81 0.32 TCGA-A2-A0YF-01 1 158817523 158817523 C T MNDA Silent p.S331S 0.34 TCGA-A2-A0YF-01 1 186304588 186304588 C G TPR Missense_Mutation p.R1598P 0.32 possibly_damaging(0.453) TCGA-A2-A0YF-01 1 227172603 227172603 G A ADCK3 Silent p.T511T 0.11 TCGA-A2-A0YF-01 1 40235710 40235710 G C OXCT2 Missense_Mutation p.D406E 0.22 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YF-01 20 57485882 57485882 T G GNAS Nonstop_Mutation p.*1038Eext*7 0.04 TCGA-A2-A0YF-01 21 36171595 36171596 - A RUNX1 Intron 0.31 TCGA-A2-A0YF-01 22 32754237 32754237 G T RFPL3 Missense_Mutation p.C60F 0.10 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YF-01 22 37707034 37707034 C T CYTH4 Missense_Mutation p.R272C 0.16 deleterious(0) probably_damaging(0.985) TCGA-A2-A0YF-01 2 113785410 113785410 G T IL36B Intron 0.27 TCGA-A2-A0YF-01 2 192711703 192711703 G A SDPR 5'UTR 0.35 TCGA-A2-A0YF-01 2 203630190 203630190 C A FAM117B Silent p.I491I 0.24 TCGA-A2-A0YF-01 2 219647024 219647024 C T CYP27A1 Missense_Mutation p.A40V 0.42 tolerated(0.24) possibly_damaging(0.506) TCGA-A2-A0YF-01 2 79350284 79350284 A G REG1A Silent p.K148K 0.41 TCGA-A2-A0YF-01 2 89339762 89339762 C A IGKV1-12 Missense_Mutation p.D104Y 0.28 deleterious(0.01) possibly_damaging(0.886) TCGA-A2-A0YF-01 3 169802155 169802155 T A GPR160 Missense_Mutation p.F132Y 0.34 tolerated(1) benign(0.002) TCGA-A2-A0YF-01 3 57543003 57543003 T C PDE12 Silent p.S299S 0.51 TCGA-A2-A0YF-01 3 98073612 98073612 T C OR5K4 Silent p.Y305Y 0.62 TCGA-A2-A0YF-01 4 42403365 42403365 C A SHISA3 Missense_Mutation p.A205D 0.06 tolerated_low_confidence(0.14) benign(0.024) TCGA-A2-A0YF-01 5 179745809 179745809 C A GFPT2 Silent p.L314L 0.05 TCGA-A2-A0YF-01 5 56181812 56181814 GTT - MAP3K1 In_Frame_Del p.V1346del 0.41 TCGA-A2-A0YF-01 5 96506986 96506986 T C RIOK2 Missense_Mutation p.I235V 0.39 deleterious(0) benign(0.219) TCGA-A2-A0YF-01 6 149699405 149699405 T C TAB2 Silent p.N118N 0.39 TCGA-A2-A0YF-01 6 32006951 32006951 C T CYP21A2 Missense_Mutation p.R125C 0.59 deleterious(0) probably_damaging(0.988) TCGA-A2-A0YF-01 6 76640790 76640790 G A IMPG1 Missense_Mutation p.A708V 0.38 tolerated(0.05) benign(0.039) TCGA-A2-A0YF-01 7 102824522 102824522 C A DPY19L2P2 RNA 0.36 TCGA-A2-A0YF-01 7 134645312 134645312 C A CALD1 Missense_Mutation p.S743Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YF-01 9 123239714 123239714 T A CDK5RAP2 Silent p.S547S 0.34 TCGA-A2-A0YF-01 X 122805564 122805564 G A THOC2 Missense_Mutation p.L273F 0.05 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YF-01 X 134125278 134125278 C T SMIM10 Silent p.L51L 0.47 TCGA-A2-A0YF-01 X 71571588 71571588 A T HDAC8 Missense_Mutation p.I369N 0.36 deleterious(0) probably_damaging(0.971) TCGA-A2-A0YG-01 10 96535205 96535205 G A CYP2C19 Silent p.T130T 0.24 TCGA-A2-A0YG-01 11 33795959 33795959 C T FBXO3 Missense_Mutation p.D29N 0.31 tolerated(0.29) possibly_damaging(0.602) TCGA-A2-A0YG-01 12 120882648 120882648 C G TRIAP1 3'UTR 0.17 TCGA-A2-A0YG-01 12 121880585 121880585 G A KDM2B Missense_Mutation p.R887W 0.45 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-A2-A0YG-01 12 123355506 123355506 G C VPS37B Missense_Mutation p.R72G 0.39 tolerated(0.22) benign(0.089) TCGA-A2-A0YG-01 12 133780735 133780737 ACT - ZNF268 In_Frame_Del p.L823del 0.24 TCGA-A2-A0YG-01 12 21971108 21971108 G T ABCC9 Silent p.G1249G 0.08 TCGA-A2-A0YG-01 12 51318953 51318953 T G METTL7A Silent p.T44T 0.16 TCGA-A2-A0YG-01 12 57922185 57922185 C T MBD6 Nonsense_Mutation p.R888* 0.43 TCGA-A2-A0YG-01 12 88481688 88481688 G A CEP290 Missense_Mutation p.R1355C 0.17 probably_damaging(0.999) TCGA-A2-A0YG-01 13 101726980 101726980 C T NALCN Missense_Mutation p.V1330I 0.24 deleterious(0.02) possibly_damaging(0.883) TCGA-A2-A0YG-01 15 45661631 45661631 T A GATM Missense_Mutation p.E126V 0.21 deleterious(0) probably_damaging(0.994) TCGA-A2-A0YG-01 15 64717756 64717756 G A TRIP4 Missense_Mutation p.D501N 0.23 deleterious(0.01) possibly_damaging(0.769) TCGA-A2-A0YG-01 15 75684981 75684981 T C SIN3A Missense_Mutation p.H818R 0.46 tolerated(0.12) possibly_damaging(0.735) TCGA-A2-A0YG-01 15 84651708 84651708 G A ADAMTSL3 Missense_Mutation p.G1110R 0.13 deleterious(0.04) benign(0.109) TCGA-A2-A0YG-01 16 73126849 73126849 A G HCCAT5 RNA 0.42 TCGA-A2-A0YG-01 16 87452476 87452476 A G ZCCHC14 Silent p.G222G 0.27 TCGA-A2-A0YG-01 16 88505654 88505654 G A ZNF469 Missense_Mutation p.E3898K 0.29 probably_damaging(0.918) TCGA-A2-A0YG-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.60 TCGA-A2-A0YG-01 18 2946472 2946472 G A LPIN2 Intron 0.15 TCGA-A2-A0YG-01 19 23545146 23545146 C G ZNF91 Missense_Mutation p.C212S 0.30 deleterious(0.01) probably_damaging(0.916) TCGA-A2-A0YG-01 19 33095253 33095253 G A ANKRD27 Silent p.F857F 0.18 TCGA-A2-A0YG-01 19 37643072 37643072 G A ZNF585A Missense_Mutation p.P522S 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-A2-A0YG-01 19 53793146 53793146 G A BIRC8 Missense_Mutation p.T161I 0.39 tolerated(0.23) benign(0.018) TCGA-A2-A0YG-01 19 58574844 58574844 C A ZNF135 Missense_Mutation p.S76Y 0.06 tolerated(0.06) possibly_damaging(0.837) TCGA-A2-A0YG-01 1 11591050 11591050 C T PTCHD2 Silent p.S1063S 0.40 TCGA-A2-A0YG-01 1 150936524 150936524 T C SETDB1 Silent p.D1241D 0.07 TCGA-A2-A0YG-01 1 154310310 154310310 G C ATP8B2 Intron 0.56 TCGA-A2-A0YG-01 1 155327183 155327183 C T ASH1L Missense_Mutation p.E2327K 0.03 tolerated_low_confidence(0.07) benign(0.22) TCGA-A2-A0YG-01 1 156012631 156012631 C T UBQLN4 Silent p.V400V 0.60 TCGA-A2-A0YG-01 1 156012664 156012664 C T UBQLN4 Silent p.Q389Q 0.60 TCGA-A2-A0YG-01 1 156012703 156012703 C T UBQLN4 Silent p.G376G 0.60 TCGA-A2-A0YG-01 1 156047154 156047154 G A MEX3A Silent p.I258I 0.61 TCGA-A2-A0YG-01 1 156047180 156047180 G A MEX3A Nonsense_Mutation p.Q250* 0.61 TCGA-A2-A0YG-01 1 158622406 158622406 G A SPTA1 Missense_Mutation p.R1076C 0.09 tolerated(0.06) benign(0.064) TCGA-A2-A0YG-01 1 160085568 160085568 C T ATP1A2 5'UTR 0.05 TCGA-A2-A0YG-01 1 17274957 17274957 T C CROCC Silent p.A882A 0.31 TCGA-A2-A0YG-01 1 178490385 178490385 A G TEX35 Missense_Mutation p.N191S 0.33 tolerated_low_confidence(0.14) probably_damaging(0.953) TCGA-A2-A0YG-01 1 179033079 179033079 T A FAM20B Missense_Mutation p.Y198N 0.09 deleterious(0) probably_damaging(0.992) TCGA-A2-A0YG-01 1 179079445 179079445 T A ABL2 Silent p.T599T 0.15 TCGA-A2-A0YG-01 1 197396917 197396917 C T CRB1 Missense_Mutation p.T821M 0.04 tolerated(0.2) benign(0.329) TCGA-A2-A0YG-01 1 210016796 210016796 G A DIEXF Silent p.R594R 0.12 TCGA-A2-A0YG-01 1 214803919 214803919 G T CENPF Nonsense_Mutation p.E413* 0.08 TCGA-A2-A0YG-01 1 70504719 70504719 G T LRRC7 Missense_Mutation p.S1033I 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-A2-A0YG-01 20 61512792 61512792 C T DIDO1 Missense_Mutation p.A1506T 0.15 probably_damaging(0.998) TCGA-A2-A0YG-01 21 43836653 43836653 C T UBASH3A Missense_Mutation p.P257L 0.17 deleterious(0.02) benign(0.045) TCGA-A2-A0YG-01 2 113994287 113994287 C T PAX8 Silent p.P263P 0.23 TCGA-A2-A0YG-01 2 209307155 209307155 G T PTH2R Missense_Mutation p.A160S 0.22 tolerated(0.42) possibly_damaging(0.595) TCGA-A2-A0YG-01 2 231033848 231033848 G A SP110 Missense_Mutation p.L712F 0.17 tolerated_low_confidence(0.72) possibly_damaging(0.765) TCGA-A2-A0YG-01 2 231077653 231077653 G T SP110 Missense_Mutation p.P136T 0.18 tolerated(0.18) possibly_damaging(0.803) TCGA-A2-A0YG-01 2 242035209 242035209 C T MTERFD2 3'UTR 0.23 TCGA-A2-A0YG-01 2 43805695 43805695 A C THADA Missense_Mutation p.F258C 0.19 deleterious(0) possibly_damaging(0.827) TCGA-A2-A0YG-01 3 195516064 195516064 C T MUC4 Missense_Mutation p.R796Q 0.17 unknown(0) TCGA-A2-A0YG-01 4 123175501 123175501 G A KIAA1109 Missense_Mutation p.R2025K 0.04 probably_damaging(0.912) TCGA-A2-A0YG-01 4 96035920 96035920 C T BMPR1B Missense_Mutation p.P95S 0.43 tolerated(0.54) benign(0.008) TCGA-A2-A0YG-01 5 130515841 130515841 T C LYRM7 Silent p.N24N 0.07 TCGA-A2-A0YG-01 5 149310662 149310662 G A PDE6A Silent p.L263L 0.38 TCGA-A2-A0YG-01 5 64865548 64865548 G A PPWD1 Missense_Mutation p.R130H 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-A2-A0YG-01 5 79033448 79033448 T C CMYA5 Silent p.L2954L 0.38 TCGA-A2-A0YG-01 5 82815167 82815167 G C VCAN Splice_Site p.X348_splice 0.11 TCGA-A2-A0YG-01 5 82817148 82817148 A G VCAN Missense_Mutation p.D1008G 0.21 deleterious(0.04) benign(0.062) TCGA-A2-A0YG-01 6 116720421 116720421 C T DSE Missense_Mutation p.T3I 0.19 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-A2-A0YG-01 6 138198386 138198386 G T TNFAIP3 Missense_Mutation p.A327S 0.39 tolerated(0.07) probably_damaging(0.919) TCGA-A2-A0YG-01 6 17688750 17688750 C T NUP153 Missense_Mutation p.D71N 0.22 tolerated(0.09) benign(0.009) TCGA-A2-A0YG-01 7 103234235 103234235 A C RELN Missense_Mutation p.F1269C 0.15 deleterious(0.01) possibly_damaging(0.75) TCGA-A2-A0YG-01 7 134133750 134133750 T A AKR1B1 Missense_Mutation p.Q184L 0.03 deleterious(0) probably_damaging(1) TCGA-A2-A0YG-01 7 134925368 134925368 G A STRA8 Missense_Mutation p.R53Q 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-A2-A0YG-01 7 45120522 45120522 G T NACAD Silent p.R1502R 0.32 TCGA-A2-A0YG-01 7 72892482 72892482 G A BAZ1B Nonsense_Mutation p.Q437* 0.16 TCGA-A2-A0YG-01 8 144941883 144941883 C T EPPK1 Missense_Mutation p.V1847M 0.32 benign(0.086) TCGA-A2-A0YG-01 8 145625778 145625778 T G CPSF1 Missense_Mutation p.T266P 0.11 tolerated(0.2) possibly_damaging(0.516) TCGA-A2-A0YG-01 8 38385938 38385938 C T C8orf86 Missense_Mutation p.R73K 0.24 deleterious_low_confidence(0) benign(0.14) TCGA-A2-A0YG-01 8 77764150 77764150 T A ZFHX4 Missense_Mutation p.L1665I 0.26 possibly_damaging(0.567) TCGA-A2-A0YG-01 8 99146755 99146755 G A POP1 Silent p.V293V 0.49 TCGA-A2-A0YG-01 9 121930072 121930072 G T BRINP1 Missense_Mutation p.L526I 0.21 deleterious(0.04) possibly_damaging(0.899) TCGA-A2-A0YG-01 9 35057429 35057429 C T VCP Silent p.R753R 0.20 TCGA-A2-A0YG-01 9 82227582 82227582 C T TLE4 Silent p.V88V 0.23 TCGA-A2-A0YG-01 X 115590146 115590146 T C SLC6A14 3'UTR 0.55 TCGA-A2-A0YG-01 X 152827663 152827663 G A ATP2B3 Missense_Mutation p.C1041Y 0.26 deleterious(0) probably_damaging(0.971) TCGA-A2-A0YH-01 10 101567986 101567986 G C ABCC2 Missense_Mutation p.Q605H 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-A2-A0YH-01 10 124189401 124189401 G C PLEKHA1 Missense_Mutation p.D388H 0.31 tolerated(0.1) benign(0.131) TCGA-A2-A0YH-01 10 79595622 79595622 C T DLG5 Missense_Mutation p.R499Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-A2-A0YH-01 10 88451754 88451754 C T LDB3 Missense_Mutation p.A332V 0.35 tolerated(0.19) possibly_damaging(0.621) TCGA-A2-A0YH-01 10 93768685 93768685 C G BTAF1 Missense_Mutation p.L1305V 0.20 deleterious(0.04) possibly_damaging(0.823) TCGA-A2-A0YH-01 10 97987268 97987268 G A BLNK Missense_Mutation p.P87S 0.20 deleterious(0) possibly_damaging(0.847) TCGA-A2-A0YH-01 11 108236319 108236319 G C ATM 3'UTR 0.09 TCGA-A2-A0YH-01 11 121425982 121425982 C T SORL1 Silent p.L842L 0.20 TCGA-A2-A0YH-01 11 30033723 30033723 G A KCNA4 Missense_Mutation p.S168L 0.19 tolerated(0.3) benign(0.026) TCGA-A2-A0YH-01 11 56000599 56000599 A T OR5T2 Silent p.S21S 0.19 TCGA-A2-A0YH-01 11 57467442 57467442 C T ZDHHC5 Missense_Mutation p.T696M 0.27 deleterious(0.03) probably_damaging(0.985) TCGA-A2-A0YH-01 12 52451198 52451198 G A NR4A1 Missense_Mutation p.C488Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YH-01 12 68696642 68696642 C T MDM1 Missense_Mutation p.R577H 0.21 tolerated(0.2) benign(0.019) TCGA-A2-A0YH-01 12 6952186 6952186 C T GNB3 Missense_Mutation p.T50M 0.15 deleterious(0.02) possibly_damaging(0.774) TCGA-A2-A0YH-01 12 7170328 7170328 T C C1S Silent p.N116N 0.14 TCGA-A2-A0YH-01 13 38158216 38158216 C T POSTN Missense_Mutation p.G378E 0.21 tolerated(0.25) probably_damaging(0.95) TCGA-A2-A0YH-01 13 88329051 88329051 G C SLITRK5 Missense_Mutation p.E470Q 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-A2-A0YH-01 14 22090085 22090085 C A TRAV1-1 Missense_Mutation p.S10Y 0.13 tolerated(1) benign(0.374) TCGA-A2-A0YH-01 14 58724656 58724656 G C PSMA3 Missense_Mutation p.R115T 0.17 deleterious(0) benign(0.266) TCGA-A2-A0YH-01 14 93649662 93649662 C G MOAP1 Missense_Mutation p.R309T 0.10 tolerated(0.55) benign(0.233) TCGA-A2-A0YH-01 15 30001020 30001020 T C TJP1 Silent p.P1531P 0.20 TCGA-A2-A0YH-01 15 41679589 41679589 C A NDUFAF1 3'UTR 0.26 TCGA-A2-A0YH-01 16 1420055 1420055 C T UNKL Intron 0.21 TCGA-A2-A0YH-01 16 28844517 28844517 G A ATXN2L Silent p.K599K 0.15 TCGA-A2-A0YH-01 17 16335539 16335539 C G TRPV2 Silent p.L638L 0.33 TCGA-A2-A0YH-01 17 30315462 30315462 G A SUZ12 Missense_Mutation p.E383K 0.16 tolerated(0.18) benign(0.152) TCGA-A2-A0YH-01 17 40091580 40091580 G C TTC25 RNA 0.17 TCGA-A2-A0YH-01 17 40091601 40091601 G A TTC25 Intron 0.14 TCGA-A2-A0YH-01 17 7577105 7577105 G A TP53 Missense_Mutation p.P278L 0.44 deleterious(0) probably_damaging(1) TCGA-A2-A0YH-01 18 29046683 29046683 G A DSG3 Silent p.K534K 0.13 TCGA-A2-A0YH-01 19 2211749 2211749 G T DOT1L Splice_Site p.X489_splice 0.61 TCGA-A2-A0YH-01 19 43376163 43376163 G A PSG1 Silent p.N155N 0.36 TCGA-A2-A0YH-01 19 58965849 58965849 T G ZNF324B Intron 0.30 TCGA-A2-A0YH-01 1 12907682 12907682 C T HNRNPCL1 Missense_Mutation p.R154Q 0.26 tolerated(0.15) benign(0.004) TCGA-A2-A0YH-01 1 148004681 148004681 T G NBPF14 Missense_Mutation p.H884P 0.04 tolerated(0.31) benign(0.006) TCGA-A2-A0YH-01 1 164815893 164815893 C A PBX1 Missense_Mutation p.H425N 0.09 tolerated(0.27) benign(0.013) TCGA-A2-A0YH-01 1 170994557 170994557 G A MROH9 Silent p.L759L 0.10 TCGA-A2-A0YH-01 1 179090987 179090987 C G ABL2 Missense_Mutation p.E235Q 0.06 deleterious(0.02) possibly_damaging(0.794) TCGA-A2-A0YH-01 1 202711835 202711835 C G KDM5B Missense_Mutation p.E808Q 0.08 deleterious(0.02) possibly_damaging(0.882) TCGA-A2-A0YH-01 1 207760857 207760857 C G CR1 Missense_Mutation p.S1886C 0.12 deleterious(0) probably_damaging(0.99) TCGA-A2-A0YH-01 1 243251448 243251448 G C RP11-261C10.3 RNA 0.48 TCGA-A2-A0YH-01 1 25688942 25688942 A C RHCE 3'UTR 0.26 TCGA-A2-A0YH-01 1 40125053 40125053 G A NT5C1A Missense_Mutation p.R283C 0.38 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YH-01 20 18377116 18377116 C T DZANK1 Silent p.K537K 0.13 TCGA-A2-A0YH-01 20 35443698 35443698 C A SOGA1 Missense_Mutation p.R716L 0.10 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YH-01 20 3783790 3783790 C G CDC25B Missense_Mutation p.I431M 0.28 tolerated(0.05) benign(0.164) TCGA-A2-A0YH-01 20 39974484 39974484 C T LPIN3 Missense_Mutation p.T14M 0.20 deleterious(0) probably_damaging(0.971) TCGA-A2-A0YH-01 21 17177479 17177479 C G USP25 Missense_Mutation p.L228V 0.21 deleterious(0) possibly_damaging(0.694) TCGA-A2-A0YH-01 21 43444542 43444542 G A ZNF295-AS1 RNA 0.10 TCGA-A2-A0YH-01 22 19220950 19220950 C A CLTCL1 Missense_Mutation p.D455Y 0.16 deleterious(0) probably_damaging(0.964) TCGA-A2-A0YH-01 22 20230142 20230142 C T RTN4R Missense_Mutation p.D172N 0.19 deleterious(0.05) benign(0.096) TCGA-A2-A0YH-01 2 179445267 179445267 C T TTN Missense_Mutation p.R22280K 0.20 TCGA-A2-A0YH-01 2 219232206 219232206 G A C2orf62 Missense_Mutation p.D296N 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-A2-A0YH-01 2 30964783 30964784 - T CAPN13 Nonsense_Mutation p.Y509* 0.18 TCGA-A2-A0YH-01 2 42871362 42871362 C T MTA3 Silent p.D159D 0.20 TCGA-A2-A0YH-01 2 49295407 49295407 G A FSHR Nonsense_Mutation p.R59* 0.20 TCGA-A2-A0YH-01 2 54081234 54081234 G C GPR75 Silent p.V220V 0.21 TCGA-A2-A0YH-01 3 132198121 132198121 G A DNAJC13 Silent p.L920L 0.23 TCGA-A2-A0YH-01 3 151017872 151017872 G A GPR87 Missense_Mutation p.T6M 0.23 deleterious_low_confidence(0.02) benign(0.084) TCGA-A2-A0YH-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.18 deleterious(0.01) probably_damaging(1) TCGA-A2-A0YH-01 3 184082777 184082777 G A POLR2H Missense_Mutation p.E33K 0.16 deleterious(0) probably_damaging(0.969) TCGA-A2-A0YH-01 3 47018174 47018174 G A CCDC12 Missense_Mutation p.R30W 0.31 deleterious(0) possibly_damaging(0.887) TCGA-A2-A0YH-01 3 61975361 61975361 C G PTPRG Missense_Mutation p.P85A 0.17 deleterious(0) probably_damaging(0.926) TCGA-A2-A0YH-01 3 73453303 73453303 C T PDZRN3 Missense_Mutation p.E388K 0.23 tolerated(0.23) benign(0.067) TCGA-A2-A0YH-01 4 100006272 100006272 T G ADH5 Silent p.R36R 0.08 TCGA-A2-A0YH-01 4 103522129 103522129 C T NFKB1 Missense_Mutation p.S572F 0.17 tolerated(0.64) benign(0.008) TCGA-A2-A0YH-01 4 113468473 113468473 C A C4orf21 Nonsense_Mutation p.E1856* 0.20 TCGA-A2-A0YH-01 4 122743651 122743651 G A CCNA2 Missense_Mutation p.R122C 0.17 tolerated(0.18) benign(0.001) TCGA-A2-A0YH-01 4 159547979 159547979 G A RXFP1 Missense_Mutation p.E255K 0.18 deleterious(0) probably_damaging(0.967) TCGA-A2-A0YH-01 4 42088373 42088373 T A SLC30A9 3'UTR 0.26 TCGA-A2-A0YH-01 4 68459065 68459065 G A STAP1 Missense_Mutation p.E273K 0.24 tolerated(0.25) benign(0.075) TCGA-A2-A0YH-01 4 85617213 85617213 C T WDFY3 Silent p.E2937E 0.22 TCGA-A2-A0YH-01 5 140214112 140214112 C G PCDHA7 Missense_Mutation p.I48M 0.42 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-A2-A0YH-01 5 140855927 140855927 G A PCDHGC3 Missense_Mutation p.E82K 0.19 tolerated(0.27) benign(0.009) TCGA-A2-A0YH-01 5 147281179 147281179 T C C5orf46 Intron 0.21 TCGA-A2-A0YH-01 6 152563452 152563452 G T SYNE1 Missense_Mutation p.Q6606K 0.16 benign(0.001) TCGA-A2-A0YH-01 6 157713934 157713934 C G TMEM242 Nonstop_Mutation p.*142Sext*5 0.20 TCGA-A2-A0YH-01 6 75857512 75857512 C G COL12A1 Silent p.V1432V 0.22 TCGA-A2-A0YH-01 6 76385620 76385620 C G SENP6 Missense_Mutation p.L491V 0.15 deleterious(0) probably_damaging(0.99) TCGA-A2-A0YH-01 7 116381073 116381073 C G MET Missense_Mutation p.I565M 0.15 deleterious(0) possibly_damaging(0.724) TCGA-A2-A0YH-01 7 55910784 55910784 C G SEPT14 Missense_Mutation p.E137Q 0.17 deleterious(0.02) probably_damaging(0.938) TCGA-A2-A0YH-01 7 75176327 75176327 G T HIP1 Silent p.I823I 0.13 TCGA-A2-A0YH-01 7 966263 966263 C T ADAP1 Silent p.G77G 0.21 TCGA-A2-A0YH-01 8 103665722 103665722 G C KLF10 Intron 0.16 TCGA-A2-A0YH-01 8 104924371 104924371 C T RIMS2 Nonsense_Mutation p.R595* 0.09 TCGA-A2-A0YH-01 8 125575147 125575147 G C MTSS1 Missense_Mutation p.S304C 0.09 tolerated(0.11) probably_damaging(0.998) TCGA-A2-A0YH-01 8 133823495 133823495 G C PHF20L1 Intron 0.12 TCGA-A2-A0YH-01 8 37607987 37607987 G A ERLIN2 Missense_Mutation p.R211Q 0.04 deleterious(0) probably_damaging(0.992) TCGA-A2-A0YH-01 8 59493101 59493101 C G SDCBP Nonsense_Mutation p.S259* 0.10 TCGA-A2-A0YH-01 8 74526082 74526082 C T STAU2 Missense_Mutation p.R263H 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-A2-A0YH-01 8 77616868 77616868 C T ZFHX4 Missense_Mutation p.S182F 0.11 benign(0.027) TCGA-A2-A0YH-01 8 77776717 77776717 T A ZFHX4 Missense_Mutation p.D3589E 0.10 probably_damaging(0.987) TCGA-A2-A0YH-01 8 93088362 93088362 T A RUNX1T1 Intron 0.08 TCGA-A2-A0YH-01 9 127990317 127990317 G A RABEPK Missense_Mutation p.D219N 0.18 deleterious(0.03) benign(0.35) TCGA-A2-A0YH-01 9 39887042 39887042 C A SPATA31A2 Nonsense_Mutation p.S95* 0.12 TCGA-A2-A0YH-01 9 6887970 6887970 A T KDM4C Silent p.P230P 0.17 TCGA-A2-A0YH-01 9 80919828 80919828 C T PSAT1 Silent p.I123I 0.10 TCGA-A2-A0YH-01 X 106066621 106066621 C T TBC1D8B Missense_Mutation p.A251V 0.17 deleterious(0) possibly_damaging(0.792) TCGA-A2-A0YH-01 X 155130211 155130211 C T VAMP7 Silent p.A131A 0.13 TCGA-A2-A0YH-01 X 49142673 49142673 G A PPP1R3F Silent p.G507G 0.56 TCGA-A2-A0YH-01 X 6069453 6069453 C A NLGN4X Missense_Mutation p.V19F 0.15 tolerated_low_confidence(0.26) benign(0.241) TCGA-A2-A0YI-01 12 122826098 122826098 C G CLIP1 Missense_Mutation p.E551D 0.23 deleterious(0) probably_damaging(0.983) TCGA-A2-A0YI-01 14 22992616 22992616 A G TRAJ21 Missense_Mutation p.N15S 0.19 unknown(0) TCGA-A2-A0YI-01 14 39788473 39788473 T A CTAGE5 Silent p.V512V 0.24 TCGA-A2-A0YI-01 14 39788474 39788474 C A CTAGE5 Missense_Mutation p.P513T 0.25 deleterious(0.04) benign(0.073) TCGA-A2-A0YI-01 15 67873162 67873162 G C MAP2K5 Splice_Site p.X108_splice 0.22 TCGA-A2-A0YI-01 16 3306365 3306365 G T MEFV Silent p.R75R 0.24 TCGA-A2-A0YI-01 19 38655323 38655323 C T SIPA1L3 Missense_Mutation p.P1329S 0.12 tolerated(0.12) benign(0.001) TCGA-A2-A0YI-01 20 47881273 47881273 G T ZNFX1 Missense_Mutation p.L711I 0.19 tolerated(0.14) possibly_damaging(0.842) TCGA-A2-A0YI-01 2 167099093 167099093 C T SCN9A Silent p.R1171R 0.16 TCGA-A2-A0YI-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.21 deleterious(0.01) probably_damaging(1) TCGA-A2-A0YI-01 3 75787372 75787372 A T ZNF717 Missense_Mutation p.L468I 0.10 tolerated(0.38) benign(0) TCGA-A2-A0YI-01 4 42088255 42088255 T C SLC30A9 3'UTR 0.16 TCGA-A2-A0YI-01 5 179564989 179564989 C T RASGEF1C Missense_Mutation p.E22K 0.35 tolerated(0.36) benign(0.002) TCGA-A2-A0YI-01 6 121452852 121452852 T C TBC1D32 Silent p.K940K 0.05 TCGA-A2-A0YI-01 7 11509516 11509516 C T THSD7A Silent p.S786S 0.18 TCGA-A2-A0YI-01 X 111155993 111155993 G T TRPC5 Missense_Mutation p.D142E 0.23 tolerated(0.06) possibly_damaging(0.789) TCGA-A2-A0YI-01 X 153031713 153031713 G A PLXNB3 Silent p.P16P 0.18 TCGA-A2-A0YI-01 X 153031769 153031769 G A PLXNB3 Nonsense_Mutation p.W35* 0.17 TCGA-A2-A0YJ-01 10 115895951 115895951 C G C10orf118 Missense_Mutation p.G461R 0.03 deleterious(0.02) probably_damaging(0.975) TCGA-A2-A0YJ-01 10 27687828 27687828 A C PTCHD3 Missense_Mutation p.C567G 0.10 deleterious(0.03) possibly_damaging(0.627) TCGA-A2-A0YJ-01 10 32856693 32856693 T C CCDC7 Silent p.G431G 0.09 TCGA-A2-A0YJ-01 10 99133604 99133604 C T RRP12 Missense_Mutation p.D616N 0.10 tolerated(0.09) benign(0.052) TCGA-A2-A0YJ-01 11 102824991 102824991 T A MMP13 Silent p.P177P 0.12 TCGA-A2-A0YJ-01 11 117376409 117376409 A G DSCAML1 Missense_Mutation p.S668P 0.21 deleterious(0.01) probably_damaging(0.921) TCGA-A2-A0YJ-01 11 118375750 118375750 A C KMT2A Missense_Mutation p.K3048T 0.13 probably_damaging(0.996) TCGA-A2-A0YJ-01 11 126073535 126073535 G C RPUSD4 Silent p.T304T 0.17 TCGA-A2-A0YJ-01 11 5842404 5842404 C G OR52N2 Missense_Mutation p.A280G 0.20 deleterious(0.04) probably_damaging(1) TCGA-A2-A0YJ-01 11 63884894 63884894 C T FLRT1 Silent p.G385G 0.19 TCGA-A2-A0YJ-01 11 78154716 78154716 C T NARS2 Missense_Mutation p.R418H 0.12 deleterious(0) possibly_damaging(0.803) TCGA-A2-A0YJ-01 12 100451829 100451829 G C UHRF1BP1L Missense_Mutation p.L1076V 0.18 tolerated(0.35) benign(0.097) TCGA-A2-A0YJ-01 12 124191572 124191572 G A TCTN2 Missense_Mutation p.E646K 0.14 deleterious(0) possibly_damaging(0.461) TCGA-A2-A0YJ-01 13 108518036 108518036 G T FAM155A Missense_Mutation p.D303E 0.13 tolerated(0.52) benign(0.198) TCGA-A2-A0YJ-01 14 102514950 102514950 A G DYNC1H1 Missense_Mutation p.E4439G 0.14 benign(0.102) TCGA-A2-A0YJ-01 14 31763097 31763097 G A RP11-596D21.1 Intron 0.19 TCGA-A2-A0YJ-01 14 65007620 65007620 G A HSPA2 Missense_Mutation p.C18Y 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-A2-A0YJ-01 14 77244414 77244414 G T VASH1 Missense_Mutation p.R342L 0.29 tolerated(0.26) probably_damaging(0.994) TCGA-A2-A0YJ-01 15 40698066 40698066 C T IVD Missense_Mutation p.A16V 0.09 tolerated_low_confidence(0.07) benign(0.002) TCGA-A2-A0YJ-01 15 75949390 75949390 G A SNX33 Missense_Mutation p.C520Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-A2-A0YJ-01 17 26875691 26875691 T C UNC119 Missense_Mutation p.K85E 0.62 tolerated(0.4) benign(0.004) TCGA-A2-A0YJ-01 17 30267315 30267315 G C SUZ12 Missense_Mutation p.Q95H 0.11 deleterious(0) possibly_damaging(0.807) TCGA-A2-A0YJ-01 17 3524661 3524661 G A SHPK Silent p.A231A 0.85 TCGA-A2-A0YJ-01 17 37821713 37821713 C G TCAP Missense_Mutation p.P34R 0.03 deleterious(0) probably_damaging(1) TCGA-A2-A0YJ-01 17 45664603 45664603 G A NPEPPS Missense_Mutation p.A330T 0.07 tolerated(0.11) possibly_damaging(0.733) TCGA-A2-A0YJ-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.62 TCGA-A2-A0YJ-01 17 8219162 8219162 T A ARHGEF15 Missense_Mutation p.F504Y 0.11 deleterious(0) probably_damaging(1) TCGA-A2-A0YJ-01 18 10471922 10471922 G A APCDD1 Missense_Mutation p.R213Q 0.33 deleterious(0) probably_damaging(0.983) TCGA-A2-A0YJ-01 18 10530817 10530817 C G NAPG Missense_Mutation p.S36C 0.13 deleterious(0.03) benign(0.216) TCGA-A2-A0YJ-01 18 32920639 32920639 A C ZNF24 5'UTR 0.11 TCGA-A2-A0YJ-01 18 44140430 44140430 C T LOXHD1 5'Flank 0.11 TCGA-A2-A0YJ-01 18 44774949 44774949 G A SKOR2 Silent p.D202D 0.10 TCGA-A2-A0YJ-01 18 47488745 47488745 A G MYO5B Missense_Mutation p.M479T 0.05 deleterious(0.03) probably_damaging(0.925) TCGA-A2-A0YJ-01 18 5428347 5428347 G C EPB41L3 Missense_Mutation p.R344G 0.08 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YJ-01 18 61064289 61064289 T G VPS4B Missense_Mutation p.Q357P 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-A2-A0YJ-01 18 67741231 67741231 C T RTTN Splice_Site p.X1522_splice 0.09 TCGA-A2-A0YJ-01 18 72109212 72109212 G A FAM69C Missense_Mutation p.A339V 0.25 deleterious(0.01) probably_damaging(0.964) TCGA-A2-A0YJ-01 19 12061101 12061101 C T ZNF700 3'UTR 0.21 TCGA-A2-A0YJ-01 19 14705309 14705309 C T CLEC17A Intron 0.17 TCGA-A2-A0YJ-01 19 21240799 21240799 C A ZNF430 Nonsense_Mutation p.S562* 0.23 TCGA-A2-A0YJ-01 19 35769686 35769686 G T USF2 Missense_Mutation p.K271N 0.10 deleterious(0) probably_damaging(0.979) TCGA-A2-A0YJ-01 19 40408807 40408807 G A FCGBP Silent p.N1344N 0.64 TCGA-A2-A0YJ-01 19 56569642 56569642 G A NLRP5 Silent p.E1112E 0.22 TCGA-A2-A0YJ-01 19 8174244 8174244 C G FBN3 Missense_Mutation p.E1495D 0.15 tolerated(1) benign(0.002) TCGA-A2-A0YJ-01 1 109794101 109794101 C T CELSR2 Missense_Mutation p.T467I 0.14 tolerated(0.2) benign(0.006) TCGA-A2-A0YJ-01 1 152058008 152058008 T A TCHHL1 Missense_Mutation p.Q717L 0.14 deleterious(0.01) benign(0.444) TCGA-A2-A0YJ-01 1 161183954 161183954 G A NDUFS2 Missense_Mutation p.D455N 0.13 deleterious(0) probably_damaging(0.992) TCGA-A2-A0YJ-01 1 161683261 161683261 C T FCRLA 3'UTR 0.75 TCGA-A2-A0YJ-01 1 175335127 175335127 T G TNR Missense_Mutation p.K734T 0.10 tolerated(0.24) benign(0.201) TCGA-A2-A0YJ-01 1 17958870 17958870 G T ARHGEF10L Missense_Mutation p.V547L 0.22 deleterious(0.03) benign(0.416) TCGA-A2-A0YJ-01 1 225266935 225266935 G A DNAH14 Silent p.L751L 0.57 TCGA-A2-A0YJ-01 1 235582837 235582837 T C TBCE Missense_Mutation p.C141R 0.04 tolerated(0.35) benign(0.001) TCGA-A2-A0YJ-01 1 240493924 240493924 G C FMN2 Missense_Mutation p.V1487L 0.06 benign(0.351) TCGA-A2-A0YJ-01 20 35128703 35128703 C T DLGAP4 Missense_Mutation p.P731L 0.16 tolerated(0.14) benign(0.216) TCGA-A2-A0YJ-01 20 55949798 55949798 T A RAE1 Missense_Mutation p.C321S 0.12 tolerated(0.45) possibly_damaging(0.818) TCGA-A2-A0YJ-01 21 15588510 15588510 G A RBM11 Translation_Start_Site p.M1? 0.05 deleterious(0.04) probably_damaging(0.914) TCGA-A2-A0YJ-01 21 28302261 28302261 T C ADAMTS5 Silent p.V723V 0.13 TCGA-A2-A0YJ-01 21 45959988 45959988 A T KRTAP10-1 Missense_Mutation p.S16T 0.12 deleterious(0.01) benign(0.153) TCGA-A2-A0YJ-01 22 26164317 26164317 A G MYO18B Missense_Mutation p.K145R 0.10 tolerated_low_confidence(0.28) benign(0.034) TCGA-A2-A0YJ-01 22 31836773 31836773 G C EIF4ENIF1 Missense_Mutation p.P878R 0.52 deleterious(0.02) benign(0.245) TCGA-A2-A0YJ-01 22 31942922 31942922 G A SFI1 Silent p.E138E 0.23 TCGA-A2-A0YJ-01 2 128408742 128408742 C T GPR17 Missense_Mutation p.P173S 0.09 tolerated(0.31) benign(0.081) TCGA-A2-A0YJ-01 2 141641506 141641506 T G LRP1B Missense_Mutation p.Y1350S 0.04 benign(0.034) TCGA-A2-A0YJ-01 2 169939876 169939876 C T DHRS9 Silent p.G117G 0.21 TCGA-A2-A0YJ-01 2 179702153 179702153 C G CCDC141 Missense_Mutation p.V1265L 0.16 tolerated(0.66) benign(0.005) TCGA-A2-A0YJ-01 2 18736890 18736890 T C RDH14 Missense_Mutation p.K193R 0.11 tolerated(0.15) benign(0.049) TCGA-A2-A0YJ-01 2 24952406 24952406 C A NCOA1 Missense_Mutation p.P975T 0.05 tolerated(0.06) possibly_damaging(0.797) TCGA-A2-A0YJ-01 3 130327755 130327755 G C COL6A6 Missense_Mutation p.G1567R 0.13 deleterious(0.03) probably_damaging(1) TCGA-A2-A0YJ-01 3 168833597 168833597 G T MECOM Missense_Mutation p.A565D 0.16 deleterious(0.02) possibly_damaging(0.642) TCGA-A2-A0YJ-01 3 46399864 46399864 A T CCR2 Missense_Mutation p.Q282H 0.15 tolerated(0.24) benign(0.012) TCGA-A2-A0YJ-01 3 49691942 49691942 G A BSN Silent p.T1651T 0.12 TCGA-A2-A0YJ-01 3 50357070 50357070 G C HYAL2 Missense_Mutation p.A284G 0.18 tolerated(1) benign(0.014) TCGA-A2-A0YJ-01 3 56468977 56468977 C T ERC2 Missense_Mutation p.R20H 0.45 tolerated(0.05) probably_damaging(0.984) TCGA-A2-A0YJ-01 4 186180136 186180136 G A SNX25 Missense_Mutation p.V53M 0.22 deleterious(0.03) benign(0.18) TCGA-A2-A0YJ-01 4 7725534 7725534 C T SORCS2 Silent p.P845P 0.25 TCGA-A2-A0YJ-01 5 50091197 50091197 C A PARP8 Silent p.T458T 0.36 TCGA-A2-A0YJ-01 6 109190160 109190160 G A ARMC2 Missense_Mutation p.R142Q 0.10 deleterious(0.04) benign(0) TCGA-A2-A0YJ-01 6 119301436 119301436 G C FAM184A Missense_Mutation p.T723R 0.16 deleterious(0.02) possibly_damaging(0.664) TCGA-A2-A0YJ-01 6 138584267 138584267 C T KIAA1244 Silent p.S549S 0.05 TCGA-A2-A0YJ-01 6 26199312 26199312 C A HIST1H2AD Missense_Mutation p.A54S 0.13 deleterious_low_confidence(0.03) probably_damaging(0.924) TCGA-A2-A0YJ-01 6 36884252 36884252 C T C6orf89 Missense_Mutation p.R250C 0.08 deleterious(0) possibly_damaging(0.857) TCGA-A2-A0YJ-01 6 43517303 43517303 G A XPO5 Missense_Mutation p.R595W 0.05 deleterious(0) probably_damaging(0.947) TCGA-A2-A0YJ-01 6 84366485 84366485 T C SNAP91 Missense_Mutation p.I216V 0.13 deleterious(0) unknown(0) TCGA-A2-A0YJ-01 7 131815200 131815200 G A PLXNA4 3'UTR 0.30 TCGA-A2-A0YJ-01 7 142630550 142630550 C A TRPV5 Missense_Mutation p.G3C 0.05 tolerated_low_confidence(0.19) benign(0.289) TCGA-A2-A0YJ-01 7 150916218 150916219 - C ABCF2 Frame_Shift_Ins p.R317Afs*63 0.15 TCGA-A2-A0YJ-01 7 155537935 155537935 G T RBM33 Missense_Mutation p.R873I 0.16 deleterious(0) unknown(0) TCGA-A2-A0YJ-01 7 15584395 15584395 A G AGMO Splice_Site p.X137_splice 0.11 TCGA-A2-A0YJ-01 7 1997278 1997278 G A MAD1L1 Missense_Mutation p.R528W 0.12 deleterious(0) possibly_damaging(0.898) TCGA-A2-A0YJ-01 7 48619862 48619862 C A ABCA13 Silent p.L4799L 0.06 TCGA-A2-A0YJ-01 7 63537782 63537782 C A ZNF727 Missense_Mutation p.R119S 0.36 tolerated(1) benign(0.001) TCGA-A2-A0YJ-01 7 64452362 64452362 C G ERV3-1 Missense_Mutation p.R348P 0.30 tolerated(0.13) benign(0.19) TCGA-A2-A0YJ-01 7 77762343 77762343 C G MAGI2 Missense_Mutation p.E1022D 0.11 tolerated(0.11) benign(0.108) TCGA-A2-A0YJ-01 7 94750069 94750069 C T PPP1R9A Missense_Mutation p.A525V 0.12 deleterious(0) probably_damaging(0.974) TCGA-A2-A0YJ-01 7 99654891 99654891 C G ZSCAN21 Missense_Mutation p.L88V 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-A2-A0YJ-01 8 48790370 48790370 C A PRKDC Nonsense_Mutation p.E1759* 0.08 TCGA-A2-A0YJ-01 8 69445301 69445301 A G C8orf34 Missense_Mutation p.D341G 0.06 deleterious(0.01) probably_damaging(0.975) TCGA-A2-A0YJ-01 8 81553607 81553607 G A ZNF704 Silent p.L411L 0.08 TCGA-A2-A0YJ-01 9 32634818 32634818 G A TAF1L Nonsense_Mutation p.R254* 0.35 TCGA-A2-A0YK-01 10 103870677 103870677 C G LDB1 Missense_Mutation p.D101H 0.07 deleterious(0) probably_damaging(0.946) TCGA-A2-A0YK-01 10 105147434 105147434 G C TAF5 Missense_Mutation p.D722H 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-A2-A0YK-01 10 11505000 11505000 G C USP6NL Missense_Mutation p.P660A 0.09 deleterious_low_confidence(0.01) probably_damaging(0.925) TCGA-A2-A0YK-01 10 11789450 11789450 G C ECHDC3 Silent p.L91L 0.15 TCGA-A2-A0YK-01 10 128788809 128788809 C A DOCK1 Missense_Mutation p.Q139K 0.09 tolerated(1) benign(0.042) TCGA-A2-A0YK-01 10 134161832 134161832 G C LRRC27 Missense_Mutation p.E300Q 0.15 deleterious(0.03) probably_damaging(0.932) TCGA-A2-A0YK-01 10 14951176 14951176 C G DCLRE1C Missense_Mutation p.R437T 0.13 tolerated_low_confidence(0.06) benign(0.028) TCGA-A2-A0YK-01 10 22616543 22616543 G C BMI1 Missense_Mutation p.D77H 0.11 deleterious(0) probably_damaging(0.971) TCGA-A2-A0YK-01 10 22653913 22653913 C G SPAG6 Missense_Mutation p.L85V 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-A2-A0YK-01 10 27342293 27342293 C G ANKRD26 Missense_Mutation p.E531Q 0.11 tolerated(0.1) benign(0.022) TCGA-A2-A0YK-01 10 31134453 31134453 C T ZNF438 Missense_Mutation p.E642K 0.24 deleterious(0.05) benign(0.067) TCGA-A2-A0YK-01 10 50294048 50294048 C G VSTM4 Missense_Mutation p.E160Q 0.12 tolerated(0.06) possibly_damaging(0.529) TCGA-A2-A0YK-01 10 5038048 5038048 G C AKR1C2 Missense_Mutation p.H194D 0.12 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 10 71874694 71874694 G C AIFM2 Missense_Mutation p.L318V 0.12 deleterious(0.04) benign(0.053) TCGA-A2-A0YK-01 10 71969403 71969403 C T PPA1 Missense_Mutation p.E184K 0.12 tolerated(0.29) benign(0.35) TCGA-A2-A0YK-01 10 75676209 75676209 G C PLAU Silent p.V394V 0.07 TCGA-A2-A0YK-01 10 79589260 79589260 C T DLG5 Missense_Mutation p.D680N 0.13 tolerated(0.39) probably_damaging(0.999) TCGA-A2-A0YK-01 10 89474611 89474611 G A PAPSS2 Silent p.L210L 0.10 TCGA-A2-A0YK-01 10 91192783 91192783 C T SLC16A12 3'UTR 0.17 TCGA-A2-A0YK-01 10 93185103 93185103 G A HECTD2 Silent p.P68P 0.19 TCGA-A2-A0YK-01 11 108200998 108200998 G A ATM Silent p.L2455L 0.15 TCGA-A2-A0YK-01 11 108206578 108206578 G A ATM Missense_Mutation p.D2720N 0.14 deleterious(0.03) possibly_damaging(0.873) TCGA-A2-A0YK-01 11 110007595 110007595 G A ZC3H12C Missense_Mutation p.E77K 0.10 tolerated(0.26) benign(0.001) TCGA-A2-A0YK-01 11 111938690 111938690 G A PIH1D2 Missense_Mutation p.H285Y 0.10 tolerated(0.71) benign(0.008) TCGA-A2-A0YK-01 11 117052583 117052583 G A SIDT2 Silent p.K122K 0.10 TCGA-A2-A0YK-01 11 125351488 125351488 G A FEZ1 Missense_Mutation p.S118L 0.12 deleterious(0) benign(0.016) TCGA-A2-A0YK-01 11 16810673 16810673 G A PLEKHA7 Silent p.L1109L 0.13 TCGA-A2-A0YK-01 11 18536242 18536242 G C TSG101 Missense_Mutation p.L114V 0.07 deleterious(0) benign(0.442) TCGA-A2-A0YK-01 11 22397575 22397575 A G SLC17A6 Missense_Mutation p.T408A 0.11 deleterious(0.02) benign(0.038) TCGA-A2-A0YK-01 11 27722426 27722426 C T BDNF Intron 0.12 TCGA-A2-A0YK-01 11 3129034 3129034 G A OSBPL5 Missense_Mutation p.S278L 0.13 deleterious(0.05) benign(0.011) TCGA-A2-A0YK-01 11 46786748 46786748 G C CKAP5 Missense_Mutation p.S1157C 0.11 deleterious(0.03) possibly_damaging(0.894) TCGA-A2-A0YK-01 11 47300612 47300612 G T MADD Silent p.L424L 0.13 TCGA-A2-A0YK-01 11 48238979 48238979 C G OR4B1 Silent p.V206V 0.13 TCGA-A2-A0YK-01 11 56058164 56058164 G A OR8H1 Silent p.I125I 0.12 TCGA-A2-A0YK-01 11 5656047 5656047 G C TRIM34 Missense_Mutation p.D236H 0.09 deleterious(0.01) benign(0.182) TCGA-A2-A0YK-01 11 61187439 61187439 C T CPSF7 Missense_Mutation p.E212K 0.11 deleterious(0) probably_damaging(0.969) TCGA-A2-A0YK-01 11 61643428 61643428 C G FADS3 Missense_Mutation p.R394T 0.36 deleterious(0) possibly_damaging(0.805) TCGA-A2-A0YK-01 11 62297688 62297688 C T AHNAK Missense_Mutation p.E1401K 0.11 possibly_damaging(0.843) TCGA-A2-A0YK-01 11 62297871 62297871 C G AHNAK Missense_Mutation p.D1340H 0.15 probably_damaging(0.981) TCGA-A2-A0YK-01 11 62297991 62297991 C T AHNAK Missense_Mutation p.E1300K 0.13 possibly_damaging(0.688) TCGA-A2-A0YK-01 11 62299408 62299408 C T AHNAK Silent p.L827L 0.09 TCGA-A2-A0YK-01 11 63987220 63987220 C T FERMT3 Silent p.L346L 0.08 TCGA-A2-A0YK-01 11 64503422 64503422 C T RASGRP2 Missense_Mutation p.E376K 0.14 deleterious(0.01) possibly_damaging(0.656) TCGA-A2-A0YK-01 11 64534715 64534715 G A SF1 Silent p.L576L 0.12 TCGA-A2-A0YK-01 11 65360593 65360593 G C KCNK7 Missense_Mutation p.F269L 0.16 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YK-01 11 66282017 66282017 G C BBS1 Silent p.R100R 0.06 TCGA-A2-A0YK-01 11 66627266 66627266 C T LRFN4 Missense_Mutation p.S503L 0.12 tolerated(0.2) benign(0.001) TCGA-A2-A0YK-01 11 67265000 67265000 G C PITPNM1 Missense_Mutation p.Q645E 0.12 tolerated(0.77) benign(0.004) TCGA-A2-A0YK-01 11 67815229 67815229 C T TCIRG1 Missense_Mutation p.S474L 0.09 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 11 68660405 68660405 C G MRPL21 Missense_Mutation p.R169T 0.08 deleterious(0) benign(0.21) TCGA-A2-A0YK-01 11 68660457 68660457 C G MRPL21 Missense_Mutation p.D152H 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-A2-A0YK-01 11 70281296 70281296 C T CTTN Intron 0.43 TCGA-A2-A0YK-01 11 76255449 76255449 G C C11orf30 Missense_Mutation p.Q952H 0.15 tolerated_low_confidence(0.06) probably_damaging(0.948) TCGA-A2-A0YK-01 11 77583386 77583386 C T AAMDC 3'UTR 0.19 TCGA-A2-A0YK-01 11 8728716 8728716 G A ST5 Silent p.F829F 0.15 TCGA-A2-A0YK-01 11 93457518 93457518 C T KIAA1731 Missense_Mutation p.P2099S 0.12 deleterious(0.01) benign(0.107) TCGA-A2-A0YK-01 11 95521679 95521679 C T FAM76B Missense_Mutation p.E46K 0.10 deleterious(0) possibly_damaging(0.855) TCGA-A2-A0YK-01 12 100606071 100606071 C G ACTR6 Missense_Mutation p.Q204E 0.09 tolerated(0.15) possibly_damaging(0.742) TCGA-A2-A0YK-01 12 10603735 10603735 G T KLRC1 Silent p.I7I 0.11 TCGA-A2-A0YK-01 12 109898564 109898564 G A KCTD10 Silent p.L88L 0.10 TCGA-A2-A0YK-01 12 112616881 112616881 C T HECTD4 Silent p.L3593L 0.06 TCGA-A2-A0YK-01 12 121986850 121986850 C T KDM2B Silent p.Q205Q 0.11 TCGA-A2-A0YK-01 12 129569260 129569260 G A TMEM132D Intron 0.10 TCGA-A2-A0YK-01 12 1299201 1299201 G C ERC1 Missense_Mutation p.K778N 0.06 deleterious(0) probably_damaging(0.992) TCGA-A2-A0YK-01 12 133448883 133448883 C T CHFR Missense_Mutation p.E111K 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-A2-A0YK-01 12 27869368 27869368 G A MRPS35 Missense_Mutation p.E100K 0.07 tolerated(0.36) benign(0.209) TCGA-A2-A0YK-01 12 30888123 30888123 C G CAPRIN2 Missense_Mutation p.K196N 0.10 deleterious(0.02) benign(0.268) TCGA-A2-A0YK-01 12 49298848 49298848 C T CCDC65 Silent p.L84L 0.17 TCGA-A2-A0YK-01 12 50367087 50367087 C T AQP6 Missense_Mutation p.S44L 0.06 deleterious(0) probably_damaging(0.956) TCGA-A2-A0YK-01 12 53413733 53413733 G A EIF4B Missense_Mutation p.E134K 0.09 tolerated(0.12) unknown(0) TCGA-A2-A0YK-01 12 53666536 53666536 C A ESPL1 Missense_Mutation p.F467L 0.12 tolerated(0.08) benign(0.412) TCGA-A2-A0YK-01 12 55524054 55524054 C G OR9K2 Missense_Mutation p.Q168E 0.10 tolerated(0.06) benign(0.1) TCGA-A2-A0YK-01 12 57623561 57623561 G A SHMT2 5'UTR 0.11 TCGA-A2-A0YK-01 12 58013853 58013853 C T SLC26A10 5'UTR 0.24 TCGA-A2-A0YK-01 12 66639040 66639040 G A IRAK3 Missense_Mutation p.E438K 0.10 tolerated(0.09) possibly_damaging(0.705) TCGA-A2-A0YK-01 12 6702638 6702638 C T CHD4 Missense_Mutation p.E820K 0.17 deleterious(0) possibly_damaging(0.874) TCGA-A2-A0YK-01 12 7019087 7019087 G C LRRC23 Missense_Mutation p.E219Q 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-A2-A0YK-01 12 7031291 7031291 C A ENO2 Missense_Mutation p.F380L 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.685) TCGA-A2-A0YK-01 12 76749802 76749802 C T OSBPL8 Splice_Site p.X846_splice 0.06 TCGA-A2-A0YK-01 12 77243248 77243248 C G ZDHHC17 Missense_Mutation p.F586L 0.12 deleterious(0) possibly_damaging(0.827) TCGA-A2-A0YK-01 12 80190988 80190988 C T PPP1R12A Missense_Mutation p.R760K 0.10 tolerated(0.11) probably_damaging(0.983) TCGA-A2-A0YK-01 12 80749644 80749644 G C OTOGL Missense_Mutation p.E1899Q 0.15 tolerated(0.58) benign(0.032) TCGA-A2-A0YK-01 12 95228264 95228264 C G MIR492 RNA 0.07 TCGA-A2-A0YK-01 12 97093812 97093812 T C C12orf55 Missense_Mutation p.Y2139H 0.11 tolerated(0.54) benign(0.002) TCGA-A2-A0YK-01 13 103385158 103385158 C G CCDC168 Missense_Mutation p.Q1334H 0.14 deleterious(0.02) unknown(0) TCGA-A2-A0YK-01 13 103474097 103474097 C G BIVM-ERCC5 Missense_Mutation p.P208A 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-A2-A0YK-01 13 111930018 111930018 C T ARHGEF7 Nonsense_Mutation p.Q523* 0.12 TCGA-A2-A0YK-01 13 114290368 114290368 C G TFDP1 Nonsense_Mutation p.S255* 0.07 TCGA-A2-A0YK-01 13 20567539 20567548 GAAGGGAAGT - ZMYM2 Frame_Shift_Del p.K110* 0.08 TCGA-A2-A0YK-01 13 38159024 38159024 C T POSTN Missense_Mutation p.E313K 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-A2-A0YK-01 13 42877812 42877812 C G AKAP11 Missense_Mutation p.L1644V 0.14 tolerated(0.31) benign(0.272) TCGA-A2-A0YK-01 13 49925006 49925006 C A CAB39L Silent p.L146L 0.07 TCGA-A2-A0YK-01 13 53216556 53216556 C T HNRNPA1L2 5'UTR 0.20 TCGA-A2-A0YK-01 13 98660331 98660331 G C IPO5 Missense_Mutation p.D597H 0.10 deleterious(0.01) possibly_damaging(0.73) TCGA-A2-A0YK-01 14 102028141 102028141 C T DIO3 Missense_Mutation p.S103F 0.14 deleterious(0) probably_damaging(0.996) TCGA-A2-A0YK-01 14 105692992 105692992 C G BRF1 Missense_Mutation p.Q298H 0.10 tolerated(0.07) possibly_damaging(0.805) TCGA-A2-A0YK-01 14 106692197 106692197 C T IGHV3-21 5'UTR 0.09 TCGA-A2-A0YK-01 14 106805254 106805254 C G IGHV4-31 Silent p.L103L 0.05 TCGA-A2-A0YK-01 14 23855274 23855274 C T MYH6 Missense_Mutation p.V1676M 0.12 deleterious(0.05) possibly_damaging(0.61) TCGA-A2-A0YK-01 14 24534837 24534837 G A LRRC16B Missense_Mutation p.E1135K 0.15 tolerated(0.13) unknown(0) TCGA-A2-A0YK-01 14 24631447 24631447 G A IRF9 Missense_Mutation p.D32N 0.15 tolerated(0.41) probably_damaging(1) TCGA-A2-A0YK-01 14 24642177 24642177 C G REC8 Missense_Mutation p.F65L 0.11 deleterious(0) benign(0.115) TCGA-A2-A0YK-01 14 24679038 24679038 G C CHMP4A 3'UTR 0.11 TCGA-A2-A0YK-01 14 24687410 24687410 G C NEDD8-MDP1 Missense_Mutation p.I26M 0.12 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-A2-A0YK-01 14 31091617 31091617 T C SCFD1 Intron 0.08 TCGA-A2-A0YK-01 14 31576363 31576363 C T HECTD1 Missense_Mutation p.E2239K 0.11 tolerated(0.11) possibly_damaging(0.755) TCGA-A2-A0YK-01 14 35786599 35786599 G C PSMA6 3'UTR 0.13 TCGA-A2-A0YK-01 14 58604848 58604848 G A C14orf37 Missense_Mutation p.S410F 0.14 deleterious(0.02) possibly_damaging(0.683) TCGA-A2-A0YK-01 14 59790845 59790845 G C DAAM1 Splice_Site p.X259_splice 0.09 TCGA-A2-A0YK-01 14 66028390 66028390 G A FUT8 Missense_Mutation p.D37N 0.10 tolerated(0.08) benign(0.167) TCGA-A2-A0YK-01 14 67382774 67382774 G A GPHN Silent p.K148K 0.08 TCGA-A2-A0YK-01 14 70037822 70037822 G A CCDC177 5'UTR 0.09 TCGA-A2-A0YK-01 14 74409190 74409190 C G FAM161B Missense_Mutation p.R448T 0.13 deleterious(0) benign(0.097) TCGA-A2-A0YK-01 14 77751976 77751976 C G POMT2 Splice_Site p.X445_splice 0.13 TCGA-A2-A0YK-01 14 81606069 81606069 G A TSHR Missense_Mutation p.E247K 0.17 tolerated(0.07) benign(0.032) TCGA-A2-A0YK-01 15 33927951 33927951 G A RYR3 Silent p.A1104A 0.12 TCGA-A2-A0YK-01 15 43525482 43525482 C A TGM5 Missense_Mutation p.K690N 0.11 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 15 51773445 51773445 G C DMXL2 Nonsense_Mutation p.S1953* 0.08 TCGA-A2-A0YK-01 15 52901227 52901227 G A FAM214A Silent p.F628F 0.08 TCGA-A2-A0YK-01 15 54305910 54305910 C G UNC13C Silent p.L270L 0.18 TCGA-A2-A0YK-01 15 55651669 55651669 C A CCPG1 Intron 0.08 TCGA-A2-A0YK-01 15 62244128 62244128 C T VPS13C Missense_Mutation p.E1451K 0.08 tolerated(0.55) benign(0.001) TCGA-A2-A0YK-01 15 64388250 64388250 G C SNX1 Missense_Mutation p.R13T 0.14 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-A2-A0YK-01 15 74631005 74631005 G A CYP11A1 Silent p.I447I 0.14 TCGA-A2-A0YK-01 15 75692392 75692392 C A SIN3A Nonsense_Mutation p.E615* 0.07 TCGA-A2-A0YK-01 15 88420214 88420214 G A NTRK3 Silent p.L824L 0.08 TCGA-A2-A0YK-01 16 14970614 14970614 C T NOMO1 Silent p.F870F 0.04 TCGA-A2-A0YK-01 16 15737211 15737211 G T NDE1 5'UTR 0.11 TCGA-A2-A0YK-01 16 24560433 24560433 G C RBBP6 Intron 0.16 TCGA-A2-A0YK-01 16 31766837 31766837 G C ZNF720 Intron 0.14 TCGA-A2-A0YK-01 16 4415517 4415517 G T CORO7 Missense_Mutation p.S272Y 0.16 deleterious(0) probably_damaging(0.972) TCGA-A2-A0YK-01 16 52484455 52484455 G A TOX3 Nonsense_Mutation p.Q138* 0.08 TCGA-A2-A0YK-01 16 57601828 57601828 G A GPR114 Silent p.L294L 0.11 TCGA-A2-A0YK-01 16 57949186 57949186 C T CNGB1 Silent p.V757V 0.08 TCGA-A2-A0YK-01 16 67477038 67477038 C T ATP6V0D1 Silent p.E175E 0.07 TCGA-A2-A0YK-01 16 68835596 68835596 C T CDH1 Nonsense_Mutation p.R63* 0.13 TCGA-A2-A0YK-01 16 69726330 69726330 G C NFAT5 Missense_Mutation p.E868Q 0.16 possibly_damaging(0.587) TCGA-A2-A0YK-01 16 71218794 71218794 C G HYDIN Missense_Mutation p.D79H 0.06 probably_damaging(0.996) TCGA-A2-A0YK-01 16 89293913 89293913 C T ZNF778 Missense_Mutation p.S378L 0.11 deleterious(0.03) probably_damaging(0.95) TCGA-A2-A0YK-01 16 89351969 89351969 G A ANKRD11 Silent p.L327L 0.15 TCGA-A2-A0YK-01 17 18167940 18167940 C T MIEF2 Silent p.I420I 0.19 TCGA-A2-A0YK-01 17 20768626 20768626 G C CCDC144NL 3'UTR 0.05 TCGA-A2-A0YK-01 17 29546065 29546065 G C NF1 Missense_Mutation p.E524Q 0.12 tolerated(0.1) benign(0.133) TCGA-A2-A0YK-01 17 33592664 33592664 G A SLFN5 Missense_Mutation p.M811I 0.14 tolerated(0.14) benign(0.002) TCGA-A2-A0YK-01 17 33984663 33984663 C T AP2B1 Silent p.N614N 0.10 TCGA-A2-A0YK-01 17 35578655 35578655 G A ACACA Missense_Mutation p.H1225Y 0.10 tolerated(0.11) probably_damaging(0.993) TCGA-A2-A0YK-01 17 36375151 36375151 G C RP11-1407O15.2 Missense_Mutation p.Q123E 0.06 TCGA-A2-A0YK-01 17 37186278 37186278 C G CTD-2206N4.2 5'Flank 0.11 TCGA-A2-A0YK-01 17 41046649 41046649 T A LINC00671 Intron 0.11 TCGA-A2-A0YK-01 17 51902101 51902101 C T KIF2B Silent p.I569I 0.13 TCGA-A2-A0YK-01 17 65734395 65734395 G A NOL11 Missense_Mutation p.E563K 0.08 tolerated(0.57) benign(0.002) TCGA-A2-A0YK-01 17 72588661 72588661 G A C17orf77 Missense_Mutation p.G159E 0.14 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-A2-A0YK-01 17 7762037 7762037 G A CYB5D1 Silent p.G117G 0.12 TCGA-A2-A0YK-01 18 19029545 19029545 G A GREB1L Missense_Mutation p.E490K 0.14 deleterious(0) possibly_damaging(0.574) TCGA-A2-A0YK-01 18 21083666 21083666 C G C18orf8 Missense_Mutation p.F28L 0.19 deleterious(0.01) benign(0.01) TCGA-A2-A0YK-01 18 31226305 31226305 G A ASXL3 Missense_Mutation p.E115K 0.13 probably_damaging(0.995) TCGA-A2-A0YK-01 18 44561725 44561725 C T TCEB3B 5'UTR 0.16 TCGA-A2-A0YK-01 18 56985530 56985530 C G CPLX4 Missense_Mutation p.E55D 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-A2-A0YK-01 18 64221726 64221726 C T CDH19 Missense_Mutation p.D176N 0.13 deleterious(0.02) probably_damaging(0.956) TCGA-A2-A0YK-01 18 74962762 74962762 C G GALR1 Silent p.L86L 0.12 TCGA-A2-A0YK-01 18 77728123 77728123 G A HSBP1L1 Silent p.Q51Q 0.07 TCGA-A2-A0YK-01 19 10505773 10505773 T G CDC37 Missense_Mutation p.Q217P 0.10 deleterious(0) probably_damaging(0.975) TCGA-A2-A0YK-01 19 12969672 12969672 C G MAST1 Intron 0.16 TCGA-A2-A0YK-01 19 14024296 14024296 G A CC2D1A Missense_Mutation p.G198E 0.12 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 19 14758065 14758065 C T EMR3 Silent p.V270V 0.05 TCGA-A2-A0YK-01 19 14938550 14938550 G C OR7A5 Missense_Mutation p.F168L 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-A2-A0YK-01 19 15082654 15082654 G T SLC1A6 Missense_Mutation p.Q80K 0.12 tolerated(1) benign(0.067) TCGA-A2-A0YK-01 19 15562447 15562447 C G RASAL3 3'UTR 0.29 TCGA-A2-A0YK-01 19 15636204 15636204 C T CYP4F22 Silent p.F19F 0.08 TCGA-A2-A0YK-01 19 17337085 17337085 C T OCEL1 Missense_Mutation p.P10L 0.17 tolerated_low_confidence(0.44) benign(0) TCGA-A2-A0YK-01 19 17780393 17780393 G A UNC13A Silent p.I121I 0.12 TCGA-A2-A0YK-01 19 18333084 18333084 G T PDE4C Missense_Mutation p.Q98K 0.10 deleterious_low_confidence(0.01) benign(0.03) TCGA-A2-A0YK-01 19 30936524 30936524 C A ZNF536 Silent p.R685R 0.14 TCGA-A2-A0YK-01 19 33422303 33422303 G A CEP89 Intron 0.14 TCGA-A2-A0YK-01 19 33450942 33450942 G C CEP89 Missense_Mutation p.L57V 0.08 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YK-01 19 38876804 38876804 G A GGN Silent p.F366F 0.15 TCGA-A2-A0YK-01 19 39374336 39374336 C T SIRT2 Missense_Mutation p.G188S 0.10 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 19 39589138 39589138 C T PAPL Silent p.V54V 0.09 TCGA-A2-A0YK-01 19 45889142 45889142 G A PPP1R13L Missense_Mutation p.S674F 0.07 deleterious(0.02) benign(0.006) TCGA-A2-A0YK-01 19 47879199 47879199 C T DHX34 Missense_Mutation p.R776W 0.18 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 19 49692273 49692273 C G TRPM4 Silent p.L648L 0.09 TCGA-A2-A0YK-01 19 52660434 52660434 C T ZNF836 Missense_Mutation p.E168K 0.09 tolerated(0.11) benign(0.006) TCGA-A2-A0YK-01 19 52719844 52719844 C G PPP2R1A Silent p.L352L 0.11 TCGA-A2-A0YK-01 19 52919303 52919303 C T ZNF528 Nonsense_Mutation p.Q400* 0.07 TCGA-A2-A0YK-01 19 54313212 54313212 C T NLRP12 Silent p.L567L 0.15 TCGA-A2-A0YK-01 19 58067621 58067621 G C ZNF550 Silent p.T35T 0.08 TCGA-A2-A0YK-01 19 7964304 7964304 C T LRRC8E Silent p.F299F 0.10 TCGA-A2-A0YK-01 19 9017514 9017514 C G MUC16 Missense_Mutation p.E12604Q 0.04 benign(0.397) TCGA-A2-A0YK-01 19 9091122 9091122 C G MUC16 Silent p.G231G 0.11 TCGA-A2-A0YK-01 1 103412488 103412488 C T COL11A1 Missense_Mutation p.A1065T 0.18 unknown(0) TCGA-A2-A0YK-01 1 107961246 107961246 G C NTNG1 Intron 0.13 TCGA-A2-A0YK-01 1 109554133 109554133 C A WDR47 Missense_Mutation p.D186Y 0.13 deleterious(0) probably_damaging(0.974) TCGA-A2-A0YK-01 1 110148667 110148667 G A GNAT2 Silent p.F215F 0.10 TCGA-A2-A0YK-01 1 119683237 119683237 C A WARS2 Nonsense_Mutation p.E11* 0.13 TCGA-A2-A0YK-01 1 149858005 149858005 G A HIST2H2BE Silent p.I62I 0.09 TCGA-A2-A0YK-01 1 149900966 149900966 G A MTMR11 3'UTR 0.07 TCGA-A2-A0YK-01 1 150727600 150727600 C A CTSS Missense_Mutation p.M92I 0.05 deleterious(0.02) benign(0.039) TCGA-A2-A0YK-01 1 151641007 151641007 G T SNX27 Missense_Mutation p.A349S 0.11 tolerated(0.11) possibly_damaging(0.497) TCGA-A2-A0YK-01 1 154471712 154471712 G A SHE Silent p.V198V 0.13 TCGA-A2-A0YK-01 1 155231934 155231934 C T SCAMP3 Silent p.Q3Q 0.13 TCGA-A2-A0YK-01 1 155880559 155880559 C T RIT1 Silent p.K15K 0.14 TCGA-A2-A0YK-01 1 156377052 156377052 C G C1orf61 Intron 0.21 TCGA-A2-A0YK-01 1 156496316 156496316 G A IQGAP3 Missense_Mutation p.L1620F 0.07 deleterious(0) unknown(0) TCGA-A2-A0YK-01 1 156500030 156500030 G A IQGAP3 Missense_Mutation p.S1424L 0.13 deleterious(0.02) possibly_damaging(0.869) TCGA-A2-A0YK-01 1 16063212 16063212 C T SLC25A34 Silent p.L78L 0.10 TCGA-A2-A0YK-01 1 161203036 161203036 C T NR1I3 Missense_Mutation p.E111K 0.06 tolerated(0.95) benign(0) TCGA-A2-A0YK-01 1 163295819 163295819 C T NUF2 Intron 0.11 TCGA-A2-A0YK-01 1 167663386 167663386 G C RCSD1 Missense_Mutation p.K107N 0.14 deleterious(0) probably_damaging(0.981) TCGA-A2-A0YK-01 1 168066241 168066241 G A GPR161 Silent p.L222L 0.08 TCGA-A2-A0YK-01 1 169762677 169762677 C T METTL18 Missense_Mutation p.D54N 0.09 tolerated(0.24) benign(0.003) TCGA-A2-A0YK-01 1 180905035 180905035 G C KIAA1614 Missense_Mutation p.E664Q 0.11 deleterious(0.01) possibly_damaging(0.718) TCGA-A2-A0YK-01 1 182025757 182025757 G A ZNF648 Silent p.L463L 0.13 TCGA-A2-A0YK-01 1 184588673 184588673 G C C1orf21 Missense_Mutation p.E117Q 0.10 tolerated(0.06) possibly_damaging(0.859) TCGA-A2-A0YK-01 1 185704148 185704148 C T HMCN1 Silent p.F79F 0.10 TCGA-A2-A0YK-01 1 19407852 19407852 C G UBR4 Missense_Mutation p.G5075A 0.14 benign(0.019) TCGA-A2-A0YK-01 1 196876108 196876108 A G CFHR4 Missense_Mutation p.N185S 0.11 tolerated(0.95) benign(0.082) TCGA-A2-A0YK-01 1 201915316 201915316 C G LMOD1 Missense_Mutation p.Q51H 0.10 probably_damaging(0.999) TCGA-A2-A0YK-01 1 202121761 202121761 C T PTPN7 Missense_Mutation p.E367K 0.12 tolerated(0.07) benign(0.332) TCGA-A2-A0YK-01 1 202568369 202568369 C G SYT2 Missense_Mutation p.E344Q 0.12 deleterious(0) probably_damaging(0.985) TCGA-A2-A0YK-01 1 204130417 204130417 C T REN Intron 0.15 TCGA-A2-A0YK-01 1 214170386 214170386 G A PROX1 Missense_Mutation p.E170K 0.10 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YK-01 1 214170450 214170450 G C PROX1 Missense_Mutation p.R191T 0.12 tolerated(0.06) possibly_damaging(0.52) TCGA-A2-A0YK-01 1 214170738 214170738 G C PROX1 Missense_Mutation p.R287T 0.09 tolerated(0.13) benign(0.213) TCGA-A2-A0YK-01 1 216390820 216390820 G C USH2A Missense_Mutation p.F1022L 0.16 benign(0.081) TCGA-A2-A0YK-01 1 220208334 220208334 C A EPRS Silent p.V51V 0.08 TCGA-A2-A0YK-01 1 22156465 22156465 C A HSPG2 Intron 0.15 TCGA-A2-A0YK-01 1 223568222 223568222 G A C1orf65 Missense_Mutation p.E469K 0.11 deleterious(0.01) possibly_damaging(0.797) TCGA-A2-A0YK-01 1 226178987 226178987 G C SDE2 Missense_Mutation p.Q200E 0.07 tolerated(0.63) benign(0) TCGA-A2-A0YK-01 1 226573297 226573297 C T PARP1 Missense_Mutation p.D307N 0.07 tolerated(0.23) benign(0.052) TCGA-A2-A0YK-01 1 231483548 231483548 C G SPRTN Silent p.L109L 0.11 TCGA-A2-A0YK-01 1 232626730 232626730 G C SIPA1L2 Missense_Mutation p.L566V 0.07 tolerated(0.09) possibly_damaging(0.816) TCGA-A2-A0YK-01 1 23768756 23768756 G C ASAP3 Silent p.L198L 0.11 TCGA-A2-A0YK-01 1 2416049 2416049 G C PLCH2 Missense_Mutation p.E243Q 0.10 deleterious(0) probably_damaging(0.966) TCGA-A2-A0YK-01 1 2436035 2436035 C T PLCH2 3'UTR 0.09 TCGA-A2-A0YK-01 1 244724071 244724071 G A C1orf101 Silent p.L377L 0.06 TCGA-A2-A0YK-01 1 246078940 246078940 G A SMYD3 Silent p.L235L 0.15 TCGA-A2-A0YK-01 1 246670372 246670372 C T SMYD3 Missense_Mutation p.D50N 0.25 tolerated(0.11) benign(0.099) TCGA-A2-A0YK-01 1 28169711 28169711 C G PPP1R8 Missense_Mutation p.F169L 0.13 deleterious(0.01) benign(0.285) TCGA-A2-A0YK-01 1 28929996 28929996 C T TAF12 3'UTR 0.10 TCGA-A2-A0YK-01 1 31406059 31406059 C G PUM1 Nonstop_Mutation p.*1189Sext*71 0.14 TCGA-A2-A0YK-01 1 31811816 31811816 A T ZCCHC17 Nonsense_Mutation p.R80* 0.14 TCGA-A2-A0YK-01 1 32092459 32092459 C G HCRTR1 Missense_Mutation p.L386V 0.09 tolerated(0.3) benign(0.034) TCGA-A2-A0YK-01 1 46496719 46496719 G C MAST2 Missense_Mutation p.E917Q 0.12 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-A2-A0YK-01 1 54610372 54610372 C T CDCP2 Missense_Mutation p.G65E 0.08 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 1 55277548 55277548 C G C1orf177 Missense_Mutation p.H188D 0.11 tolerated(0.09) possibly_damaging(0.853) TCGA-A2-A0YK-01 1 57320542 57320542 C T C8A 5'UTR 0.06 TCGA-A2-A0YK-01 1 62910909 62910909 C T USP1 Missense_Mutation p.S353F 0.07 deleterious(0) probably_damaging(1) TCGA-A2-A0YK-01 1 63113970 63113970 G C DOCK7 Nonsense_Mutation p.S180* 0.11 TCGA-A2-A0YK-01 1 65255161 65255161 C T RAVER2 Silent p.L357L 0.13 TCGA-A2-A0YK-01 1 92789578 92789578 T G RPAP2 Silent p.L367L 0.18 TCGA-A2-A0YK-01 1 93989865 93989865 G C FNBP1L Missense_Mutation p.W130C 0.11 deleterious(0) possibly_damaging(0.81) TCGA-A2-A0YK-01 1 94650459 94650459 G C ARHGAP29 Nonsense_Mutation p.S693* 0.15 TCGA-A2-A0YK-01 20 18460784 18460784 G C POLR3F Missense_Mutation p.E178Q 0.08 deleterious(0.01) benign(0.219) TCGA-A2-A0YK-01 20 20493705 20493705 G C RALGAPA2 Silent p.L1436L 0.07 TCGA-A2-A0YK-01 20 21227155 21227155 G C PLK1S1 RNA 0.08 TCGA-A2-A0YK-01 20 23334674 23334674 C T NXT1 5'UTR 0.12 TCGA-A2-A0YK-01 20 34575437 34575437 C T CNBD2 Silent p.F279F 0.06 TCGA-A2-A0YK-01 20 3540081 3540081 C T ATRN Missense_Mutation p.S385F 0.11 deleterious(0.01) benign(0.418) TCGA-A2-A0YK-01 20 37202806 37202806 G C RALGAPB Missense_Mutation p.E1386Q 0.10 tolerated(0.12) probably_damaging(0.925) TCGA-A2-A0YK-01 20 42972038 42972038 C T R3HDML Silent p.L134L 0.11 TCGA-A2-A0YK-01 20 50133376 50133376 C T NFATC2 Missense_Mutation p.E427K 0.07 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YK-01 20 52570235 52570235 C G BCAS1 Splice_Site p.X473_splice 0.16 TCGA-A2-A0YK-01 20 60791847 60791847 C T HRH3 Missense_Mutation p.E185K 0.11 tolerated(0.33) benign(0.362) TCGA-A2-A0YK-01 20 61835143 61835143 G C YTHDF1 Nonsense_Mutation p.S50* 0.10 TCGA-A2-A0YK-01 20 62372734 62372734 G C SLC2A4RG Missense_Mutation p.G98A 0.08 tolerated(0.32) possibly_damaging(0.628) TCGA-A2-A0YK-01 20 9370583 9370583 C G PLCB4 Missense_Mutation p.L406V 0.12 deleterious(0) possibly_damaging(0.671) TCGA-A2-A0YK-01 21 30434457 30434457 G C CCT8 Missense_Mutation p.L402V 0.11 tolerated(0.08) possibly_damaging(0.642) TCGA-A2-A0YK-01 21 30925922 30925922 C T GRIK1 Missense_Mutation p.R904Q 0.15 tolerated_low_confidence(0.34) benign(0) TCGA-A2-A0YK-01 21 33371214 33371214 C G HUNK Missense_Mutation p.S621C 0.15 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-A2-A0YK-01 21 35288025 35288025 C T ATP5O Intron 0.13 TCGA-A2-A0YK-01 21 37418155 37418155 G A SETD4 Missense_Mutation p.L151F 0.10 tolerated(0.1) possibly_damaging(0.558) TCGA-A2-A0YK-01 21 40194639 40194639 G C ETS2 Missense_Mutation p.M412I 0.16 deleterious(0) probably_damaging(0.921) TCGA-A2-A0YK-01 21 45929254 45929254 C T TSPEAR Missense_Mutation p.D528N 0.17 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YK-01 22 18028848 18028848 G C CECR2 Missense_Mutation p.E1270Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YK-01 22 19344476 19344476 G C HIRA Missense_Mutation p.S778C 0.11 deleterious(0) possibly_damaging(0.882) TCGA-A2-A0YK-01 22 21178685 21178685 C T PI4KA Missense_Mutation p.E129K 0.08 deleterious(0) possibly_damaging(0.896) TCGA-A2-A0YK-01 22 22287824 22287824 C A PPM1F Missense_Mutation p.G229V 0.10 tolerated(0.15) benign(0.014) TCGA-A2-A0YK-01 22 24583679 24583679 G C SUSD2 Missense_Mutation p.E678Q 0.12 tolerated(0.36) benign(0.061) TCGA-A2-A0YK-01 22 38131375 38131375 C T TRIOBP Silent p.L1678L 0.17 TCGA-A2-A0YK-01 22 43464475 43464475 G C TTLL1 Missense_Mutation p.I148M 0.12 deleterious(0) probably_damaging(0.988) TCGA-A2-A0YK-01 22 50682333 50682333 G A TUBGCP6 Missense_Mutation p.P186S 0.10 deleterious(0) probably_damaging(0.996) TCGA-A2-A0YK-01 2 10742941 10742941 C T NOL10 Silent p.Q431Q 0.09 TCGA-A2-A0YK-01 2 112582590 112582590 G A ANAPC1 Missense_Mutation p.S922F 0.05 tolerated(0.07) benign(0.02) TCGA-A2-A0YK-01 2 128398468 128398468 C T LIMS2 Intron 0.08 TCGA-A2-A0YK-01 2 149226685 149226685 G C MBD5 Missense_Mutation p.M391I 0.13 tolerated(0.17) benign(0) TCGA-A2-A0YK-01 2 149818561 149818561 G C KIF5C Missense_Mutation p.E349Q 0.09 deleterious(0.05) possibly_damaging(0.857) TCGA-A2-A0YK-01 2 164467795 164467795 G C FIGN Missense_Mutation p.Q183E 0.09 deleterious(0.03) benign(0.217) TCGA-A2-A0YK-01 2 171807955 171807955 G A GORASP2 Missense_Mutation p.G185S 0.15 deleterious(0) probably_damaging(0.989) TCGA-A2-A0YK-01 2 174829897 174829897 C T SP3 Translation_Start_Site p.M1? 0.15 deleterious(0.03) benign(0.107) TCGA-A2-A0YK-01 2 179592543 179592543 C G TTN Missense_Mutation p.D6588H 0.11 TCGA-A2-A0YK-01 2 179606636 179606636 G A TTN Missense_Mutation p.S3775F 0.08 TCGA-A2-A0YK-01 2 189904175 189904175 C G COL5A2 Missense_Mutation p.E1250Q 0.09 unknown(0) TCGA-A2-A0YK-01 2 200298221 200298221 G C SATB2 Silent p.V62V 0.08 TCGA-A2-A0YK-01 2 203972759 203972759 C T NBEAL1 Silent p.F570F 0.09 TCGA-A2-A0YK-01 2 210896072 210896072 G A KANSL1L Intron 0.11 TCGA-A2-A0YK-01 2 225343033 225343033 C T CUL3 Missense_Mutation p.E687K 0.08 deleterious(0) probably_damaging(0.932) TCGA-A2-A0YK-01 2 228211994 228211994 G A MFF Missense_Mutation p.E216K 0.17 deleterious(0.01) possibly_damaging(0.601) TCGA-A2-A0YK-01 2 233347817 233347817 C G ECEL1 Missense_Mutation p.E527Q 0.18 tolerated(0.14) benign(0.014) TCGA-A2-A0YK-01 2 233408068 233408068 G C CHRNG Missense_Mutation p.E297Q 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A0YK-01 2 239181776 239181776 C G PER2 Missense_Mutation p.D169H 0.13 deleterious(0.05) benign(0.007) TCGA-A2-A0YK-01 2 241530314 241530314 G A CAPN10 Nonsense_Mutation p.W119* 0.10 TCGA-A2-A0YK-01 2 27157540 27157540 C T DPYSL5 Silent p.V295V 0.07 TCGA-A2-A0YK-01 2 32743447 32743447 C G BIRC6 Missense_Mutation p.L3826V 0.09 possibly_damaging(0.528) TCGA-A2-A0YK-01 2 37516501 37516501 C G PRKD3 Missense_Mutation p.E239Q 0.12 tolerated(0.28) benign(0.027) TCGA-A2-A0YK-01 2 44032338 44032338 C T DYNC2LI1 Nonsense_Mutation p.Q316* 0.21 TCGA-A2-A0YK-01 2 46808117 46808117 G C RHOQ Missense_Mutation p.L171F 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-A2-A0YK-01 2 48950777 48950777 C T LHCGR Missense_Mutation p.E148K 0.11 tolerated(0.29) possibly_damaging(0.733) TCGA-A2-A0YK-01 2 71789024 71789024 C A DYSF Missense_Mutation p.L787M 0.16 tolerated(0.11) benign(0.389) TCGA-A2-A0YK-01 2 73676777 73676777 G A ALMS1 Silent p.E1040E 0.06 TCGA-A2-A0YK-01 2 74437088 74437088 G C MTHFD2 Missense_Mutation p.K194N 0.06 deleterious(0) possibly_damaging(0.903) TCGA-A2-A0YK-01 2 98412842 98412842 G A TMEM131 Silent p.F1013F 0.10 TCGA-A2-A0YK-01 3 101572535 101572535 G C NFKBIZ Missense_Mutation p.E389Q 0.20 tolerated(0.29) benign(0.075) TCGA-A2-A0YK-01 3 111766642 111766642 G C TMPRSS7 Missense_Mutation p.E137Q 0.08 tolerated(0.18) possibly_damaging(0.772) TCGA-A2-A0YK-01 3 113169221 113169221 G A SPICE1 Missense_Mutation p.P762L 0.12 tolerated(0.05) benign(0.039) TCGA-A2-A0YK-01 3 119101244 119101244 C T ARHGAP31 Silent p.L179L 0.16 TCGA-A2-A0YK-01 3 119466075 119466075 G C MAATS1 Missense_Mutation p.E672D 0.09 tolerated(0.31) benign(0.012) TCGA-A2-A0YK-01 3 125249293 125249293 C T OSBPL11 3'UTR 0.06 TCGA-A2-A0YK-01 3 139236284 139236284 G C RBP1 3'UTR 0.25 TCGA-A2-A0YK-01 3 142066099 142066099 C G XRN1 Missense_Mutation p.R1285T 0.10 tolerated_low_confidence(0.2) benign(0.206) TCGA-A2-A0YK-01 3 14725873 14725873 C T C3orf20 Silent p.S203S 0.15 TCGA-A2-A0YK-01 3 148603939 148603939 C A CPA3 Silent p.I347I 0.11 TCGA-A2-A0YK-01 3 148786065 148786065 G C HLTF Missense_Mutation p.L318V 0.08 deleterious(0.01) probably_damaging(0.958) TCGA-A2-A0YK-01 3 14963443 14963443 C T FGD5 Silent p.D1196D 0.13 TCGA-A2-A0YK-01 3 15297832 15297832 C G SH3BP5 Intron 0.13 TCGA-A2-A0YK-01 3 164906803 164906803 C A SLITRK3 Nonsense_Mutation p.E606* 0.11 TCGA-A2-A0YK-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.10 tolerated(0.44) benign(0.085) TCGA-A2-A0YK-01 3 184086143 184086143 G C POLR2H 3'UTR 0.21 TCGA-A2-A0YK-01 3 195453068 195453068 G A MUC20 Missense_Mutation p.E532K 0.08 deleterious(0.01) unknown(0) TCGA-A2-A0YK-01 3 196547400 196547400 G A PAK2 Missense_Mutation p.E438K 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-A2-A0YK-01 3 37146954 37146954 C G LRRFIP2 Missense_Mutation p.E259Q 0.14 tolerated(0.1) benign(0.244) TCGA-A2-A0YK-01 3 42956022 42956022 G A ZNF662 Missense_Mutation p.D179N 0.11 tolerated(0.27) possibly_damaging(0.691) TCGA-A2-A0YK-01 3 43384891 43384891 G C SNRK Missense_Mutation p.E334Q 0.15 deleterious(0.01) probably_damaging(0.978) TCGA-A2-A0YK-01 3 44598897 44598897 G A ZKSCAN7 Missense_Mutation p.E120K 0.11 tolerated(0.43) possibly_damaging(0.781) TCGA-A2-A0YK-01 3 44795848 44795848 G T KIAA1143 Missense_Mutation p.Q41K 0.14 tolerated(0.3) benign(0.147) TCGA-A2-A0YK-01 3 49054908 49054908 C G DALRD3 Missense_Mutation p.E253Q 0.10 tolerated(0.31) benign(0.009) TCGA-A2-A0YK-01 3 49083950 49083950 C T QRICH1 Missense_Mutation p.G527R 0.12 deleterious(0) probably_damaging(0.995) TCGA-A2-A0YK-01 3 50413289 50413289 C A CACNA2D2 Missense_Mutation p.G599V 0.11 deleterious(0) probably_damaging(0.992) TCGA-A2-A0YK-01 3 58355203 58355203 C A PXK Missense_Mutation p.Q67K 0.08 tolerated(0.87) benign(0.012) TCGA-A2-A0YK-01 4 102019596 102019596 C T PPP3CA Silent p.L190L 0.09 TCGA-A2-A0YK-01 4 10447181 10447181 C G ZNF518B Missense_Mutation p.D258H 0.09 deleterious(0.01) possibly_damaging(0.765) TCGA-A2-A0YK-01 4 119754855 119754855 G C SEC24D 5'UTR 0.08 TCGA-A2-A0YK-01 4 119953152 119953152 C G SYNPO2 Missense_Mutation p.F1074L 0.10 deleterious(0) possibly_damaging(0.894) TCGA-A2-A0YK-01 4 128626754 128626754 G C INTU Missense_Mutation p.L525F 0.11 deleterious(0) probably_damaging(0.966) TCGA-A2-A0YK-01 4 141488985 141488985 G A UCP1 Silent p.L91L 0.06 TCGA-A2-A0YK-01 4 155411830 155411830 C T DCHS2 Silent p.R226R 0.12 TCGA-A2-A0YK-01 4 2233655 2233655 C G HAUS3 Nonstop_Mutation p.*604Sext*21 0.09 TCGA-A2-A0YK-01 4 22737717 22737717 C T GBA3 Silent p.L58L 0.08 TCGA-A2-A0YK-01 4 266107 266107 G C ZNF732 Nonsense_Mutation p.S180* 0.09 TCGA-A2-A0YK-01 4 3344728 3344728 C T RGS12 Missense_Mutation p.S649L 0.13 deleterious(0) probably_damaging(0.948) TCGA-A2-A0YK-01 4 40351268 40351268 C T CHRNA9 Silent p.L245L 0.10 TCGA-A2-A0YK-01 4 6864664 6864664 C T KIAA0232 Missense_Mutation p.S852L 0.09 deleterious(0.02) benign(0.165) TCGA-A2-A0YK-01 4 68928178 68928178 C G TMPRSS11F Intron 0.11 TCGA-A2-A0YK-01 4 76570799 76570799 C A G3BP2 Missense_Mutation p.D422Y 0.14 tolerated(0.1) probably_damaging(0.998) TCGA-A2-A0YK-01 4 79856355 79856355 C G PAQR3 Missense_Mutation p.D90H 0.12 deleterious(0) benign(0.385) TCGA-A2-A0YK-01 4 89941662 89941662 C T FAM13A Missense_Mutation p.D126N 0.06 deleterious(0.01) benign(0.312) TCGA-A2-A0YK-01 4 985117 985117 G C SLC26A1 Missense_Mutation p.I125M 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-A2-A0YK-01 5 114952043 114952043 C T TMED7-TICAM2 Missense_Mutation p.E180K 0.12 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-A2-A0YK-01 5 130766969 130766969 G A RAPGEF6 Nonsense_Mutation p.Q1358* 0.11 TCGA-A2-A0YK-01 5 138994175 138994175 C G UBE2D2 Missense_Mutation p.F31L 0.13 tolerated_low_confidence(0.06) probably_damaging(0.935) TCGA-A2-A0YK-01 5 140184804 140184804 C G PCDHA2 Intron 0.08 TCGA-A2-A0YK-01 5 140604293 140604293 G C PCDHB14 Missense_Mutation p.E406Q 0.10 tolerated_low_confidence(0.06) probably_damaging(0.925) TCGA-A2-A0YK-01 5 140793682 140793682 G A PCDHGA10 Missense_Mutation p.E314K 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A2-A0YK-01 5 143200050 143200050 C T HMHB1 Silent p.L15L 0.09 TCGA-A2-A0YK-01 5 149294525 149294525 C G PDE6A Missense_Mutation p.E327Q 0.04 deleterious(0.03) probably_damaging(0.995) TCGA-A2-A0YK-01 5 151179471 151179471 G A G3BP1 Missense_Mutation p.E289K 0.10 tolerated(0.06) benign(0.002) TCGA-A2-A0YK-01 5 154296630 154296630 C G GEMIN5 Missense_Mutation p.E595Q 0.10 tolerated(0.06) benign(0.235) TCGA-A2-A0YK-01 5 159822377 159822377 C T C5orf54 Missense_Mutation p.D41N 0.09 tolerated(0.06) possibly_damaging(0.465) TCGA-A2-A0YK-01 5 180326184 180326184 C T BTNL8 5'UTR 0.06 TCGA-A2-A0YK-01 5 24511615 24511615 G A CDH10 Missense_Mutation p.H275Y 0.16 tolerated(0.17) benign(0.342) TCGA-A2-A0YK-01 5 32126633 32126633 G A GOLPH3 Silent p.F194F 0.07 TCGA-A2-A0YK-01 5 36195094 36195094 G C NADK2 3'UTR 0.17 TCGA-A2-A0YK-01 5 40981496 40981496 G C C7 Missense_Mutation p.E785Q 0.09 tolerated(1) benign(0) TCGA-A2-A0YK-01 5 41004949 41004949 C T MROH2B Nonsense_Mutation p.W1313* 0.10 TCGA-A2-A0YK-01 5 458075 458075 G C EXOC3 Missense_Mutation p.E409Q 0.08 tolerated(0.09) benign(0.184) TCGA-A2-A0YK-01 5 56178257 56178257 C G MAP3K1 Nonsense_Mutation p.S1077* 0.13 TCGA-A2-A0YK-01 5 56178544 56178544 C G MAP3K1 Missense_Mutation p.H1173D 0.07 tolerated_low_confidence(0.12) benign(0.035) TCGA-A2-A0YK-01 5 65105883 65105883 G C NLN Missense_Mutation p.Q578H 0.07 deleterious(0) probably_damaging(0.996) TCGA-A2-A0YK-01 5 68581193 68581193 G A CCDC125 Nonsense_Mutation p.Q401* 0.10 TCGA-A2-A0YK-01 5 74647013 74647013 C G HMGCR Missense_Mutation p.I354M 0.12 tolerated(0.15) benign(0.062) TCGA-A2-A0YK-01 5 75490829 75490829 G C SV2C Silent p.L222L 0.03 TCGA-A2-A0YK-01 5 77590302 77590302 G A AP3B1 Silent p.F34F 0.14 TCGA-A2-A0YK-01 5 78351677 78351677 C T DMGDH Missense_Mutation p.D111N 0.07 tolerated(0.99) benign(0.014) TCGA-A2-A0YK-01 5 78919237 78919237 C T PAPD4 Silent p.V130V 0.11 TCGA-A2-A0YK-01 6 110301388 110301388 C G GPR6 Missense_Mutation p.S358C 0.10 deleterious(0) probably_damaging(0.987) TCGA-A2-A0YK-01 6 128410949 128410949 G A PTPRK Nonsense_Mutation p.Q451* 0.10 TCGA-A2-A0YK-01 6 131190820 131190820 G A EPB41L2 Silent p.H830H 0.04 TCGA-A2-A0YK-01 6 132271151 132271151 C G CTGF Missense_Mutation p.E231Q 0.12 tolerated(0.09) possibly_damaging(0.688) TCGA-A2-A0YK-01 6 144780043 144780043 G C UTRN Missense_Mutation p.D808H 0.12 tolerated(0.06) possibly_damaging(0.671) TCGA-A2-A0YK-01 6 145103087 145103087 G A UTRN Missense_Mutation p.E2888K 0.14 deleterious(0.02) possibly_damaging(0.755) TCGA-A2-A0YK-01 6 149395130 149395130 C T UST Missense_Mutation p.H367Y 0.10 tolerated_low_confidence(0.6) benign(0.006) TCGA-A2-A0YK-01 6 150001345 150001345 C G LATS1 Missense_Mutation p.E753D 0.08 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YK-01 6 157505500 157505500 G C ARID1B Missense_Mutation p.E1161Q 0.11 probably_damaging(0.98) TCGA-A2-A0YK-01 6 160222208 160222208 C A PNLDC1 Silent p.V55V 0.13 TCGA-A2-A0YK-01 6 16295315 16295315 G T GMPR Silent p.L312L 0.10 TCGA-A2-A0YK-01 6 17796927 17796927 T C KIF13A Missense_Mutation p.H972R 0.12 tolerated(0.07) benign(0.001) TCGA-A2-A0YK-01 6 24572905 24572905 G A KIAA0319 Missense_Mutation p.H586Y 0.09 tolerated(0.08) probably_damaging(0.952) TCGA-A2-A0YK-01 6 28056897 28056897 G C ZNF165 Missense_Mutation p.E369D 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-A2-A0YK-01 6 29054633 29054633 G A OR2B3 Silent p.H131H 0.08 TCGA-A2-A0YK-01 6 31917204 31917204 T C CFB Silent p.Y928Y 0.15 TCGA-A2-A0YK-01 6 33246095 33246095 G A B3GALT4 Missense_Mutation p.R300Q 0.11 tolerated(0.17) possibly_damaging(0.805) TCGA-A2-A0YK-01 6 35086222 35086222 G T TCP11 Missense_Mutation p.L459I 0.13 deleterious(0.02) probably_damaging(0.98) TCGA-A2-A0YK-01 6 41196619 41196619 G C TREML4 Missense_Mutation p.Q77H 0.10 deleterious(0) probably_damaging(0.984) TCGA-A2-A0YK-01 6 41766538 41766538 G C USP49 Silent p.L600L 0.10 TCGA-A2-A0YK-01 6 43403563 43403563 C G ABCC10 Silent p.L561L 0.16 TCGA-A2-A0YK-01 6 44271999 44271999 C T AARS2 Silent p.L642L 0.07 TCGA-A2-A0YK-01 6 46135445 46135445 G C ENPP5 Silent p.L185L 0.07 TCGA-A2-A0YK-01 6 5545457 5545457 G C FARS2 Missense_Mutation p.E317Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YK-01 6 97715767 97715767 G A MMS22L Missense_Mutation p.S270L 0.15 deleterious(0) probably_damaging(0.99) TCGA-A2-A0YK-01 7 102738803 102738803 C T ARMC10 Nonsense_Mutation p.R279* 0.10 TCGA-A2-A0YK-01 7 123256501 123256501 G A ASB15 Missense_Mutation p.E82K 0.08 tolerated(0.26) benign(0.01) TCGA-A2-A0YK-01 7 142564664 142564664 G C EPHB6 Missense_Mutation p.E530Q 0.11 tolerated(1) probably_damaging(0.967) TCGA-A2-A0YK-01 7 149509070 149509070 C T SSPO RNA 0.11 TCGA-A2-A0YK-01 7 150066791 150066791 G A REPIN1 5'UTR 0.08 TCGA-A2-A0YK-01 7 150732799 150732799 C T ABCB8 Silent p.L299L 0.12 TCGA-A2-A0YK-01 7 152139796 152139796 G A AC005631.1 3'Flank 0.14 TCGA-A2-A0YK-01 7 33102192 33102192 C T NT5C3A Silent p.K47K 0.11 TCGA-A2-A0YK-01 7 43548716 43548716 G C HECW1 Missense_Mutation p.E1339Q 0.08 deleterious(0.03) probably_damaging(0.925) TCGA-A2-A0YK-01 7 72419433 72419433 G A POM121 3'UTR 0.15 TCGA-A2-A0YK-01 7 87837693 87837693 C G SRI Intron 0.11 TCGA-A2-A0YK-01 7 91864151 91864151 C G KRIT1 Missense_Mutation p.Q272H 0.09 tolerated(0.38) benign(0.165) TCGA-A2-A0YK-01 7 92147080 92147080 C T PEX1 Missense_Mutation p.G250E 0.14 tolerated(0.06) benign(0.043) TCGA-A2-A0YK-01 7 95906630 95906630 G A SLC25A13 Silent p.N30N 0.15 TCGA-A2-A0YK-01 7 98951679 98951679 G C ARPC1A Silent p.G216G 0.12 TCGA-A2-A0YK-01 7 99457509 99457509 G C CYP3A43 Missense_Mutation p.D308H 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-A2-A0YK-01 7 99687264 99687264 G T COPS6 Nonsense_Mutation p.E77* 0.14 TCGA-A2-A0YK-01 8 100729481 100729481 G A VPS13B Silent p.L2204L 0.11 TCGA-A2-A0YK-01 8 133854821 133854821 C G PHF20L1 Missense_Mutation p.Q817E 0.05 tolerated(0.33) benign(0.001) TCGA-A2-A0YK-01 8 142166000 142166000 C G DENND3 Missense_Mutation p.S296C 0.14 tolerated(0.09) probably_damaging(0.976) TCGA-A2-A0YK-01 8 146068038 146068038 C T ZNF7 Nonsense_Mutation p.Q516* 0.09 TCGA-A2-A0YK-01 8 3045463 3045463 C T CSMD1 Missense_Mutation p.E1850K 0.13 probably_damaging(0.998) TCGA-A2-A0YK-01 8 37968319 37968319 G A ASH2L Missense_Mutation p.E185K 0.06 tolerated(0.65) benign(0.058) TCGA-A2-A0YK-01 8 38105255 38105255 C G DDHD2 Missense_Mutation p.Q384E 0.06 tolerated(0.89) benign(0.006) TCGA-A2-A0YK-01 8 38148193 38148193 C T WHSC1L1 Nonsense_Mutation p.W973* 0.09 TCGA-A2-A0YK-01 8 39785590 39785590 G A IDO1 Silent p.K366K 0.10 TCGA-A2-A0YK-01 8 39872887 39872887 G A IDO2 Silent p.L343L 0.10 TCGA-A2-A0YK-01 8 48847602 48847602 G A PRKDC Silent p.I488I 0.08 TCGA-A2-A0YK-01 8 52469421 52469421 C G PXDNL Missense_Mutation p.G120A 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A0YK-01 8 53038648 53038648 C T ST18 Missense_Mutation p.E907K 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A0YK-01 8 73480017 73480017 G A KCNB2 Silent p.S16S 0.15 TCGA-A2-A0YK-01 8 86047157 86047157 G C LRRCC1 Missense_Mutation p.E682Q 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A0YK-01 8 88885220 88885220 C T DCAF4L2 Missense_Mutation p.G327E 0.13 deleterious(0.04) benign(0.167) TCGA-A2-A0YK-01 8 95802235 95802235 G C DPY19L4 3'UTR 0.17 TCGA-A2-A0YK-01 9 120476002 120476002 C G TLR4 Missense_Mutation p.F532L 0.10 tolerated(1) benign(0.004) TCGA-A2-A0YK-01 9 129641712 129641712 C T ZBTB34 Nonsense_Mutation p.Q8* 0.07 TCGA-A2-A0YK-01 9 135204629 135204629 C G SETX Missense_Mutation p.E786Q 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.642) TCGA-A2-A0YK-01 9 136898628 136898628 G A BRD3 3'UTR 0.09 TCGA-A2-A0YK-01 9 35718823 35718823 C T TLN1 Missense_Mutation p.D661N 0.08 tolerated(0.34) possibly_damaging(0.64) TCGA-A2-A0YK-01 9 37707410 37707410 C T FRMPD1 Intron 0.14 TCGA-A2-A0YK-01 9 37735702 37735702 G A FRMPD1 Missense_Mutation p.V458I 0.12 tolerated(0.06) benign(0.003) TCGA-A2-A0YK-01 9 4117903 4117903 G A GLIS3 Silent p.H525H 0.12 TCGA-A2-A0YK-01 9 84199083 84199083 C T TLE1 3'UTR 0.07 TCGA-A2-A0YK-01 9 96439986 96439986 C T PHF2 3'UTR 0.10 TCGA-A2-A0YK-01 X 10201800 10201800 G A CLCN4 3'UTR 0.21 TCGA-A2-A0YK-01 X 102193008 102193008 C G RAB40AL Silent p.L254L 0.08 TCGA-A2-A0YK-01 X 102864050 102864050 G C TCEAL3 Missense_Mutation p.D20H 0.09 deleterious(0.01) possibly_damaging(0.757) TCGA-A2-A0YK-01 X 105855377 105855377 G A CXorf57 Missense_Mutation p.E23K 0.10 deleterious(0.02) benign(0.321) TCGA-A2-A0YK-01 X 107169922 107169922 C G MID2 Nonsense_Mutation p.Y609* 0.11 TCGA-A2-A0YK-01 X 11778559 11778559 G A MSL3 Missense_Mutation p.D75N 0.12 tolerated(0.23) probably_damaging(0.984) TCGA-A2-A0YK-01 X 117883731 117883731 C G IL13RA1 Missense_Mutation p.L160V 0.08 deleterious(0) probably_damaging(0.931) TCGA-A2-A0YK-01 X 118971836 118971836 C G UPF3B Missense_Mutation p.E396Q 0.10 tolerated(0.11) probably_damaging(0.954) TCGA-A2-A0YK-01 X 119678470 119678470 G A CUL4B Missense_Mutation p.H335Y 0.13 tolerated(0.23) benign(0.018) TCGA-A2-A0YK-01 X 149013535 149013535 G A MAGEA8 Silent p.V163V 0.10 TCGA-A2-A0YK-01 X 149101988 149101988 C T CXorf40B Silent p.R35R 0.12 TCGA-A2-A0YK-01 X 151092290 151092290 G A MAGEA4 Missense_Mutation p.E52K 0.10 tolerated(0.21) possibly_damaging(0.685) TCGA-A2-A0YK-01 X 154194294 154194294 G A F8 Missense_Mutation p.S465L 0.10 tolerated(0.14) benign(0.049) TCGA-A2-A0YK-01 X 17820060 17820060 C G RAI2 Missense_Mutation p.R24T 0.08 deleterious(0) probably_damaging(0.962) TCGA-A2-A0YK-01 X 23934361 23934361 C A CXorf58 Missense_Mutation p.F113L 0.11 deleterious(0.05) benign(0.406) TCGA-A2-A0YK-01 X 24665150 24665150 C G PCYT1B Missense_Mutation p.E25Q 0.09 tolerated_low_confidence(0.23) benign(0.023) TCGA-A2-A0YK-01 X 27766356 27766356 C G DCAF8L2 Silent p.L448L 0.10 TCGA-A2-A0YK-01 X 38146055 38146055 C T RPGR Missense_Mutation p.E733K 0.10 unknown(0) TCGA-A2-A0YK-01 X 41204737 41204737 G A DDX3X Silent p.Q417Q 0.12 TCGA-A2-A0YK-01 X 44894182 44894182 C A KDM6A Missense_Mutation p.Q191K 0.10 tolerated(0.17) benign(0.209) TCGA-A2-A0YK-01 X 47919589 47919589 C G ZNF630 Missense_Mutation p.R81T 0.08 tolerated(0.43) benign(0.19) TCGA-A2-A0YK-01 X 49083410 49083410 C T CACNA1F Missense_Mutation p.R433Q 0.11 tolerated(0.33) benign(0) TCGA-A2-A0YK-01 X 53225894 53225894 C T KDM5C Silent p.E985E 0.11 TCGA-A2-A0YK-01 X 55020450 55020450 C T PFKFB1 5'UTR 0.11 TCGA-A2-A0YK-01 X 71715093 71715093 G C HDAC8 Missense_Mutation p.L155V 0.16 tolerated(1) benign(0.012) TCGA-A2-A0YK-01 X 92926717 92926717 C T NAP1L3 3'UTR 0.08 TCGA-A2-A0YL-01 11 1272579 1272579 C G MUC5B Silent p.T4823T 0.08 TCGA-A2-A0YL-01 11 64878879 64878879 C T VPS51 Silent p.F723F 0.08 TCGA-A2-A0YL-01 11 6631001 6631001 G A ILK Missense_Mutation p.M301I 0.19 tolerated(1) benign(0) TCGA-A2-A0YL-01 11 71510986 71510986 C T FAM86C1 3'UTR 0.36 TCGA-A2-A0YL-01 12 100173682 100173682 G C ANKS1B Missense_Mutation p.Q272E 0.04 deleterious(0) possibly_damaging(0.48) TCGA-A2-A0YL-01 14 103802236 103802236 C G EIF5 Missense_Mutation p.F13L 0.04 deleterious(0.03) benign(0.038) TCGA-A2-A0YL-01 14 103803097 103803097 C T EIF5 Missense_Mutation p.H80Y 0.10 deleterious(0) possibly_damaging(0.53) TCGA-A2-A0YL-01 16 68846119 68846129 ACAGTCACTGA - CDH1 Frame_Shift_Del p.T364Hfs*4 0.21 TCGA-A2-A0YL-01 17 15978941 15978941 C A NCOR1 Nonsense_Mutation p.E1193* 0.07 TCGA-A2-A0YL-01 17 2276709 2276709 G A SGSM2 Missense_Mutation p.E668K 0.12 deleterious(0.05) benign(0.275) TCGA-A2-A0YL-01 17 29548886 29548886 C T NF1 Nonsense_Mutation p.Q554* 0.08 TCGA-A2-A0YL-01 17 29557890 29557890 G A NF1 Nonsense_Mutation p.W1048* 0.11 TCGA-A2-A0YL-01 17 29663859 29663860 - C NF1 Frame_Shift_Ins p.R2119Qfs*10 0.10 TCGA-A2-A0YL-01 17 37009228 37009228 T C RPL23 Intron 0.15 TCGA-A2-A0YL-01 17 71208852 71208852 C G FAM104A Missense_Mutation p.E117Q 0.07 tolerated_low_confidence(0.06) benign(0.037) TCGA-A2-A0YL-01 18 44229157 44229157 C T LOXHD1 Missense_Mutation p.G69E 0.11 deleterious(0) probably_damaging(0.988) TCGA-A2-A0YL-01 19 22235427 22235427 G A ZNF257 5'UTR 0.05 TCGA-A2-A0YL-01 19 53644217 53644217 C G ZNF347 Missense_Mutation p.E623Q 0.04 deleterious(0.03) benign(0.302) TCGA-A2-A0YL-01 1 167024247 167024247 C T GPA33 Missense_Mutation p.D265N 0.08 tolerated(0.15) benign(0.276) TCGA-A2-A0YL-01 1 204103702 204103702 G C ETNK2 Missense_Mutation p.F343L 0.10 tolerated(0.39) benign(0.003) TCGA-A2-A0YL-01 1 240976995 240976995 G A RGS7 Silent p.Y293Y 0.29 TCGA-A2-A0YL-01 1 75037848 75037848 C T C1orf173 Silent p.L1182L 0.07 TCGA-A2-A0YL-01 21 45833784 45833784 C T TRPM2 Silent p.F991F 0.15 TCGA-A2-A0YL-01 21 47742728 47742728 C T C21orf58 5'UTR 0.24 TCGA-A2-A0YL-01 22 24573575 24573575 C T CABIN1 Silent p.A2103A 0.16 TCGA-A2-A0YL-01 22 36591386 36591386 C T APOL4 Silent p.K63K 0.04 TCGA-A2-A0YL-01 22 42086639 42086639 T C C22orf46 Missense_Mutation p.L3S 0.07 deleterious(0) probably_damaging(0.934) TCGA-A2-A0YL-01 2 210574677 210574677 C G MAP2 Nonsense_Mutation p.S1591* 0.10 TCGA-A2-A0YL-01 2 220430079 220430079 C T OBSL1 Silent p.V764V 0.08 TCGA-A2-A0YL-01 3 127783832 127783832 G A SEC61A1 Missense_Mutation p.M243I 0.09 tolerated(0.2) benign(0.003) TCGA-A2-A0YL-01 3 14803109 14803109 G A C3orf20 Missense_Mutation p.D828N 0.06 tolerated(1) benign(0.002) TCGA-A2-A0YL-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.14 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A0YL-01 3 193183931 193183931 G C ATP13A4 Silent p.L385L 0.04 TCGA-A2-A0YL-01 4 69978529 69978529 A G UGT2B7 3'UTR 0.14 TCGA-A2-A0YL-01 5 174156269 174156269 C T MSX2 Nonsense_Mutation p.Q163* 0.17 TCGA-A2-A0YL-01 6 144144872 144144872 G A PHACTR2 3'UTR 0.09 TCGA-A2-A0YL-01 6 46657341 46657341 G A TDRD6 Silent p.Q492Q 0.05 TCGA-A2-A0YL-01 7 107615491 107615491 G A LAMB1 Silent p.S474S 0.09 TCGA-A2-A0YL-01 7 99054111 99054111 C T CPSF4 Silent p.L266L 0.09 TCGA-A2-A0YL-01 9 6013396 6013396 G C RANBP6 Missense_Mutation p.L738V 0.08 deleterious(0) probably_damaging(0.986) TCGA-A2-A0YL-01 X 151128423 151128423 G A GABRE Silent p.I224I 0.09 TCGA-A2-A0YL-01 X 153674859 153674859 C T FAM50A Silent p.G131G 0.16 TCGA-A2-A0YL-01 X 154301669 154301669 C T BRCC3 Missense_Mutation p.A53V 0.03 tolerated_low_confidence(0.47) benign(0.018) TCGA-A2-A0YL-01 X 48207729 48207729 T A SSX3 Intron 0.06 TCGA-A2-A0YL-01 X 53460760 53460760 C T HSD17B10 Missense_Mutation p.G34E 0.17 deleterious(0) possibly_damaging(0.545) TCGA-A2-A0YM-01 10 15151734 15151734 G T NMT2 Nonsense_Mutation p.Y481* 0.30 TCGA-A2-A0YM-01 10 28224074 28224074 C T ARMC4 Missense_Mutation p.R787H 0.14 tolerated(0.26) benign(0) TCGA-A2-A0YM-01 10 29813436 29813436 G A SVIL Nonsense_Mutation p.Q851* 0.41 TCGA-A2-A0YM-01 10 70190364 70190364 G A DNA2 Silent p.H765H 0.13 TCGA-A2-A0YM-01 11 111958687 111958687 G A SDHD Silent p.P53P 0.39 TCGA-A2-A0YM-01 11 123479407 123479407 G A GRAMD1B Silent p.Q375Q 0.65 TCGA-A2-A0YM-01 11 125315852 125315852 G A FEZ1 3'UTR 0.33 TCGA-A2-A0YM-01 11 18733928 18733928 C T IGSF22 Missense_Mutation p.R700H 0.18 tolerated(0.3) benign(0.003) TCGA-A2-A0YM-01 11 5012712 5012712 C A MMP26 Nonsense_Mutation p.S194* 0.07 TCGA-A2-A0YM-01 11 56019960 56019960 T C OR5T3 Silent p.V95V 0.23 TCGA-A2-A0YM-01 11 85623726 85623726 C T CCDC83 Missense_Mutation p.P277S 0.24 tolerated_low_confidence(0.16) benign(0.034) TCGA-A2-A0YM-01 11 88911667 88911667 T C TYR Silent p.Y182Y 0.23 TCGA-A2-A0YM-01 12 10150953 10150953 G A CLEC1B Missense_Mutation p.R31C 0.09 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YM-01 12 123461289 123461289 G C OGFOD2 Missense_Mutation p.R33P 0.24 deleterious(0.02) probably_damaging(0.946) TCGA-A2-A0YM-01 12 25054936 25054937 - A BCAT1 Intron 0.13 TCGA-A2-A0YM-01 12 38712083 38712083 A C ALG10B Silent p.T64T 0.12 TCGA-A2-A0YM-01 12 51584232 51584232 C T POU6F1 Missense_Mutation p.R235H 0.29 deleterious(0) probably_damaging(0.916) TCGA-A2-A0YM-01 12 987432 987432 T C WNK1 Missense_Mutation p.S760P 0.04 tolerated(1) unknown(0) TCGA-A2-A0YM-01 14 31675003 31675003 G C HECTD1 Missense_Mutation p.T47R 0.33 deleterious(0.01) possibly_damaging(0.677) TCGA-A2-A0YM-01 14 92582496 92582496 C T NDUFB1 3'UTR 0.08 TCGA-A2-A0YM-01 14 95030067 95030067 C T SERPINA4 Missense_Mutation p.S83L 0.12 deleterious(0) probably_damaging(1) TCGA-A2-A0YM-01 15 77310845 77310845 G A PSTPIP1 Missense_Mutation p.R62Q 0.20 deleterious(0) possibly_damaging(0.527) TCGA-A2-A0YM-01 16 1604885 1604885 C T TMEM204 Missense_Mutation p.T180M 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A2-A0YM-01 16 3063852 3063852 C G CLDN9 Silent p.S163S 0.44 TCGA-A2-A0YM-01 16 77240349 77240349 T A SYCE1L Missense_Mutation p.S25T 0.25 tolerated(0.09) benign(0.324) TCGA-A2-A0YM-01 17 18232668 18232668 C G SHMT1 Silent p.R402R 0.11 TCGA-A2-A0YM-01 17 27825439 27825439 T G TAOK1 Missense_Mutation p.V368G 0.40 deleterious(0.04) benign(0.037) TCGA-A2-A0YM-01 17 29196617 29196617 C G ATAD5 Nonsense_Mutation p.S1187* 0.25 TCGA-A2-A0YM-01 17 29549029 29549029 T G NF1 Intron 0.18 TCGA-A2-A0YM-01 17 62007688 62007688 A G CD79B Missense_Mutation p.F60S 0.16 tolerated(1) benign(0.002) TCGA-A2-A0YM-01 17 66878115 66878115 C T ABCA8 Missense_Mutation p.V1239I 0.04 deleterious(0.05) benign(0.071) TCGA-A2-A0YM-01 17 7162022 7162022 C G ELP5 Intron 0.49 TCGA-A2-A0YM-01 17 73132265 73132265 C A HN1 Silent p.R126R 0.19 TCGA-A2-A0YM-01 17 7574030 7574030 G - TP53 Frame_Shift_Del p.R333Vfs*12 0.40 TCGA-A2-A0YM-01 17 7708622 7708622 G A DNAH2 Missense_Mutation p.R3118Q 0.61 probably_damaging(0.981) TCGA-A2-A0YM-01 17 7800561 7800561 G A CHD3 Missense_Mutation p.R682H 0.11 possibly_damaging(0.522) TCGA-A2-A0YM-01 19 13211714 13211714 G C LYL1 Missense_Mutation p.S91C 0.18 deleterious(0) possibly_damaging(0.62) TCGA-A2-A0YM-01 19 17756618 17756618 G A UNC13A Missense_Mutation p.R741C 0.45 deleterious(0) probably_damaging(1) TCGA-A2-A0YM-01 19 33493244 33493244 G A RHPN2 Silent p.P338P 0.10 TCGA-A2-A0YM-01 19 50411501 50411501 C G NUP62 Missense_Mutation p.D522H 0.35 deleterious(0) possibly_damaging(0.903) TCGA-A2-A0YM-01 19 9639430 9639430 A G ZNF426 Missense_Mutation p.Y431H 0.17 tolerated(0.53) possibly_damaging(0.752) TCGA-A2-A0YM-01 1 10355754 10355754 A T KIF1B Silent p.I523I 0.20 TCGA-A2-A0YM-01 1 10502470 10502470 C G APITD1-CORT Intron 0.25 TCGA-A2-A0YM-01 1 111742287 111742287 T C DENND2D Silent p.S67S 0.28 TCGA-A2-A0YM-01 1 151261988 151261988 A G ZNF687 Missense_Mutation p.Q869R 0.10 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YM-01 1 152278649 152278649 C G FLG Missense_Mutation p.E2905Q 0.20 benign(0.001) TCGA-A2-A0YM-01 1 158583650 158583650 C T SPTA1 Missense_Mutation p.D2284N 0.14 deleterious(0) probably_damaging(0.998) TCGA-A2-A0YM-01 1 158669827 158669827 C A OR6K2 Missense_Mutation p.V206L 0.26 tolerated(0.46) benign(0.02) TCGA-A2-A0YM-01 1 165173057 165173057 C A LMX1A 3'UTR 0.07 TCGA-A2-A0YM-01 1 32712875 32712875 C A FAM167B 5'UTR 0.31 TCGA-A2-A0YM-01 1 42048715 42048715 C T HIVEP3 Missense_Mutation p.R585Q 0.22 probably_damaging(0.996) TCGA-A2-A0YM-01 1 43672428 43672428 T C WDR65 Missense_Mutation p.L527P 0.71 deleterious(0) probably_damaging(0.978) TCGA-A2-A0YM-01 1 44364896 44364896 C T ST3GAL3 Missense_Mutation p.S242F 0.09 deleterious(0) probably_damaging(0.987) TCGA-A2-A0YM-01 1 85624487 85624487 C G SYDE2 Missense_Mutation p.L1177F 0.04 deleterious(0) probably_damaging(0.996) TCGA-A2-A0YM-01 1 89618120 89618120 G C GBP7 Missense_Mutation p.I152M 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-A2-A0YM-01 20 13610600 13610601 - CCT TASP1 In_Frame_Ins p.G42dup 0.20 TCGA-A2-A0YM-01 20 3845118 3845118 A G MAVS Missense_Mutation p.I281V 0.16 tolerated(0.1) benign(0.001) TCGA-A2-A0YM-01 21 40834367 40834367 G A SH3BGR Missense_Mutation p.D101N 0.14 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YM-01 2 132237879 132237879 G A TUBA3D Missense_Mutation p.D205N 0.18 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-A2-A0YM-01 2 207557962 207557962 G A DYTN Missense_Mutation p.A306V 0.21 tolerated(0.31) benign(0.001) TCGA-A2-A0YM-01 2 238245104 238245104 G A COL6A3 Missense_Mutation p.T2880M 0.24 unknown(0) TCGA-A2-A0YM-01 2 32476335 32476335 C A NLRC4 Missense_Mutation p.V200F 0.13 deleterious(0) probably_damaging(0.996) TCGA-A2-A0YM-01 2 45774702 45774705 GAAG AAA SRBD1 Frame_Shift_Del p.R576Efs*6 0.19 TCGA-A2-A0YM-01 2 80801302 80801302 G A CTNNA2 Missense_Mutation p.A586T 0.28 tolerated(0.5) benign(0.004) TCGA-A2-A0YM-01 3 108220616 108220616 G C MYH15 Silent p.L114L 0.16 TCGA-A2-A0YM-01 3 133647451 133647451 G C C3orf36 Missense_Mutation p.S66C 0.14 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-A2-A0YM-01 3 17051565 17051565 G C PLCL2 Missense_Mutation p.V117L 0.14 deleterious(0.01) possibly_damaging(0.881) TCGA-A2-A0YM-01 3 183905743 183905743 G C ABCF3 Missense_Mutation p.E181Q 0.14 deleterious(0.02) possibly_damaging(0.701) TCGA-A2-A0YM-01 3 185644497 185644497 C T TRA2B Missense_Mutation p.G21E 0.14 deleterious_low_confidence(0.04) unknown(0) TCGA-A2-A0YM-01 3 38924780 38924780 G T SCN11A Missense_Mutation p.H1055N 0.22 deleterious(0.03) probably_damaging(1) TCGA-A2-A0YM-01 3 52726938 52726938 C T GNL3 Missense_Mutation p.P307L 0.25 deleterious(0) probably_damaging(1) TCGA-A2-A0YM-01 3 52729961 52729961 G A GLT8D1 Missense_Mutation p.R210C 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-A2-A0YM-01 3 57616685 57616685 C A DENND6A Missense_Mutation p.L458F 0.04 deleterious(0) probably_damaging(0.996) TCGA-A2-A0YM-01 4 106604428 106604428 G C INTS12 Missense_Mutation p.S284W 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-A2-A0YM-01 4 107956556 107956556 C T DKK2 Missense_Mutation p.G65S 0.12 tolerated(0.21) benign(0) TCGA-A2-A0YM-01 4 159048560 159048560 C T FAM198B Silent p.%3D 0.05 TCGA-A2-A0YM-01 4 40810797 40810797 C G NSUN7 Missense_Mutation p.I666M 0.23 tolerated(0.24) benign(0.011) TCGA-A2-A0YM-01 4 76407592 76407592 G A RCHY1 3'UTR 0.28 TCGA-A2-A0YM-01 4 76891502 76891502 C G SDAD1 Silent p.V281V 0.33 TCGA-A2-A0YM-01 4 82092953 82092953 G A PRKG2 Nonsense_Mutation p.R212* 0.30 TCGA-A2-A0YM-01 4 95223325 95223325 C A HPGDS Missense_Mutation p.G136V 0.39 deleterious(0) probably_damaging(0.986) TCGA-A2-A0YM-01 5 140256728 140256728 C T PCDHA12 Silent p.D557D 0.20 TCGA-A2-A0YM-01 5 156513993 156513993 C T HAVCR2 3'UTR 0.39 TCGA-A2-A0YM-01 5 77590365 77590365 T A AP3B1 Silent p.G13G 0.24 TCGA-A2-A0YM-01 6 167446108 167446108 G A FGFR1OP Missense_Mutation p.D336N 0.20 deleterious(0) possibly_damaging(0.77) TCGA-A2-A0YM-01 6 167446117 167446117 G T FGFR1OP Missense_Mutation p.D339Y 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-A2-A0YM-01 6 167447381 167447381 G A FGFR1OP Silent p.E349E 0.16 TCGA-A2-A0YM-01 6 167447390 167447390 G C FGFR1OP Missense_Mutation p.E352D 0.17 tolerated(0.35) benign(0.02) TCGA-A2-A0YM-01 6 167447418 167447418 G C FGFR1OP Missense_Mutation p.D362H 0.18 deleterious(0) probably_damaging(0.928) TCGA-A2-A0YM-01 6 27841182 27841182 C T HIST1H4L Missense_Mutation p.R36Q 0.16 deleterious(0.02) possibly_damaging(0.876) TCGA-A2-A0YM-01 6 33248585 33248585 G A WDR46 Missense_Mutation p.A432V 0.18 tolerated(0.33) benign(0.444) TCGA-A2-A0YM-01 6 33410890 33410890 G A SYNGAP1 Missense_Mutation p.R854H 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-A2-A0YM-01 6 42934186 42934186 C T PEX6 Splice_Site p.X699_splice 0.15 TCGA-A2-A0YM-01 6 43514346 43514346 C G XPO5 Missense_Mutation p.Q768H 0.12 tolerated(0.68) benign(0.002) TCGA-A2-A0YM-01 6 44268089 44268089 C T AARS2 3'UTR 0.50 TCGA-A2-A0YM-01 6 44268103 44268103 C T AARS2 3'UTR 0.46 TCGA-A2-A0YM-01 6 87797889 87797889 G C CGA Missense_Mutation p.I10M 0.06 deleterious(0.01) benign(0.07) TCGA-A2-A0YM-01 7 100802408 100802408 G T AP1S1 Silent p.G120G 0.38 TCGA-A2-A0YM-01 7 119915032 119915032 G A KCND2 Missense_Mutation p.D116N 0.19 deleterious(0.03) probably_damaging(0.988) TCGA-A2-A0YM-01 7 129125575 129125575 C T STRIP2 Silent p.L804L 0.09 TCGA-A2-A0YM-01 7 151970817 151970817 C T KMT2C Missense_Mutation p.E329K 0.03 possibly_damaging(0.852) TCGA-A2-A0YM-01 7 5396789 5396789 C G TNRC18 Missense_Mutation p.S1651T 0.21 benign(0.004) TCGA-A2-A0YM-01 7 91729014 91729014 C A AKAP9 Missense_Mutation p.S3576Y 0.31 benign(0.413) TCGA-A2-A0YM-01 8 104063345 104063345 G A ATP6V1C1 Silent p.L118L 0.04 TCGA-A2-A0YM-01 8 10555126 10555126 G T C8orf74 Missense_Mutation p.A87S 0.37 deleterious(0) probably_damaging(0.986) TCGA-A2-A0YM-01 8 94740583 94740583 G C FAM92A1 3'UTR 0.16 TCGA-A2-A0YM-01 9 114156470 114156470 G A KIAA0368 Silent p.V1142V 0.43 TCGA-A2-A0YM-01 9 121439 121439 A G CBWD1 3'UTR 0.38 TCGA-A2-A0YM-01 9 123249710 123249710 G T CDK5RAP2 Missense_Mutation p.F496L 0.21 tolerated(1) benign(0.018) TCGA-A2-A0YM-01 9 135513477 135513477 G A DDX31 Intron 0.27 TCGA-A2-A0YM-01 9 22451752 22451752 T C DMRTA1 Missense_Mutation p.S453P 0.17 deleterious(0.04) benign(0.007) TCGA-A2-A0YM-01 9 6606599 6606599 G A GLDC Nonsense_Mutation p.R236* 0.08 TCGA-A2-A0YM-01 X 49065105 49065105 C T CACNA1F Missense_Mutation p.G1676R 0.64 tolerated(0.71) benign(0) TCGA-A2-A0YT-01 10 101591523 101591523 C T ABCC2 Silent p.T1013T 0.39 TCGA-A2-A0YT-01 10 105942201 105942201 C T WDR96 Missense_Mutation p.A738T 0.22 tolerated(0.82) benign(0) TCGA-A2-A0YT-01 10 121275051 121275051 G C RGS10 Missense_Mutation p.H123Q 0.20 tolerated(0.14) probably_damaging(0.997) TCGA-A2-A0YT-01 10 50165257 50165257 C T WDFY4 Silent p.D2687D 0.13 TCGA-A2-A0YT-01 11 106810893 106810893 C A GUCY1A2 Nonsense_Mutation p.E167* 0.25 TCGA-A2-A0YT-01 11 117163790 117163790 G A BACE1 Silent p.L274L 0.37 TCGA-A2-A0YT-01 11 117163803 117163803 G A BACE1 Silent p.I269I 0.40 TCGA-A2-A0YT-01 11 117163821 117163821 G A BACE1 Silent p.I263I 0.41 TCGA-A2-A0YT-01 11 117164599 117164599 G A BACE1 Silent p.V231V 0.58 TCGA-A2-A0YT-01 11 117988053 117988053 G A TMPRSS4 Missense_Mutation p.D396N 0.28 tolerated(0.29) benign(0.013) TCGA-A2-A0YT-01 11 47833684 47833684 T G NUP160 Missense_Mutation p.S725R 0.41 tolerated(0.54) benign(0.004) TCGA-A2-A0YT-01 11 55541605 55541605 G A OR5D13 Missense_Mutation p.R231Q 0.36 tolerated(0.13) benign(0.002) TCGA-A2-A0YT-01 11 55541783 55541783 G A OR5D13 Silent p.L290L 0.38 TCGA-A2-A0YT-01 11 55541846 55541846 G A OR5D13 Silent p.L311L 0.34 TCGA-A2-A0YT-01 11 59343984 59343984 C T OSBP 3'UTR 0.43 TCGA-A2-A0YT-01 11 60637860 60637860 C T ZP1 Silent p.I246I 0.25 TCGA-A2-A0YT-01 11 60640695 60640695 C T ZP1 Silent p.F391F 0.44 TCGA-A2-A0YT-01 11 66189989 66189989 G A NPAS4 Missense_Mutation p.R132H 0.40 deleterious(0) benign(0.4) TCGA-A2-A0YT-01 11 70033901 70033901 G C ANO1 Missense_Mutation p.D918H 0.19 deleterious(0) probably_damaging(0.997) TCGA-A2-A0YT-01 11 70033915 70033915 G A ANO1 Silent p.Q922Q 0.17 TCGA-A2-A0YT-01 11 70033961 70033961 G A ANO1 Missense_Mutation p.E938K 0.13 deleterious(0) probably_damaging(0.995) TCGA-A2-A0YT-01 11 70033967 70033967 G A ANO1 Missense_Mutation p.D940N 0.14 tolerated(0.05) benign(0.038) TCGA-A2-A0YT-01 11 70033997 70033997 G C ANO1 Missense_Mutation p.E950Q 0.14 tolerated(0.48) possibly_damaging(0.645) TCGA-A2-A0YT-01 12 124414242 124414242 C T DNAH10 Missense_Mutation p.T4065M 0.21 benign(0.38) TCGA-A2-A0YT-01 12 6230460 6230460 G A VWF Nonsense_Mutation p.R34* 0.68 TCGA-A2-A0YT-01 12 72027055 72027055 G C ZFC3H1 Missense_Mutation p.L892V 0.10 deleterious(0.01) benign(0.256) TCGA-A2-A0YT-01 13 33700224 33700224 G A STARD13 Silent p.L692L 0.44 TCGA-A2-A0YT-01 13 52990193 52990193 A G VPS36 Silent p.F342F 0.20 TCGA-A2-A0YT-01 13 53298164 53298164 C T LECT1 Missense_Mutation p.A146T 0.31 tolerated(0.6) benign(0.001) TCGA-A2-A0YT-01 13 93879855 93879855 A T GPC6 Missense_Mutation p.Y49F 0.55 tolerated(0.7) benign(0.003) TCGA-A2-A0YT-01 13 95131476 95131476 A C DCT Missense_Mutation p.C12G 0.16 tolerated(0.06) benign(0.081) TCGA-A2-A0YT-01 14 65569045 65569045 C T MAX Missense_Mutation p.D5N 0.67 deleterious(0.01) possibly_damaging(0.79) TCGA-A2-A0YT-01 15 52500831 52500844 CTAAATGTTCCTTA - MYO5C Splice_Site p.X1433_splice 0.24 TCGA-A2-A0YT-01 16 30583249 30583249 C G ZNF688 5'UTR 0.64 TCGA-A2-A0YT-01 16 30583250 30583250 T G ZNF688 5'UTR 0.58 TCGA-A2-A0YT-01 17 10310046 10310046 C T MYH8 Missense_Mutation p.G711E 0.19 deleterious(0) probably_damaging(1) TCGA-A2-A0YT-01 17 4722079 4722079 C T PLD2 Missense_Mutation p.R712C 0.66 deleterious(0) probably_damaging(0.998) TCGA-A2-A0YT-01 17 62130664 62130664 G A ERN1 Missense_Mutation p.S674L 0.17 deleterious(0.02) benign(0.058) TCGA-A2-A0YT-01 17 7577517 7577517 A C TP53 Missense_Mutation p.I255S 0.74 deleterious(0) probably_damaging(0.999) TCGA-A2-A0YT-01 17 79426117 79426117 C T RP11-1055B8.7 Silent p.D1881D 0.36 TCGA-A2-A0YT-01 19 55449557 55449557 G A NLRP7 Missense_Mutation p.R662C 0.75 tolerated(0.26) benign(0.001) TCGA-A2-A0YT-01 19 56243942 56243942 C A NLRP9 Missense_Mutation p.G419W 0.17 deleterious(0) probably_damaging(0.998) TCGA-A2-A0YT-01 19 9213395 9213395 C T OR7G2 Silent p.P196P 0.17 TCGA-A2-A0YT-01 1 160718252 160718252 C A SLAMF7 Nonsense_Mutation p.Y108* 0.14 TCGA-A2-A0YT-01 1 187610932 187610932 G A ERVMER61-1 RNA 0.10 TCGA-A2-A0YT-01 1 19584466 19584466 G A MRTO4 Missense_Mutation p.A161T 0.64 tolerated(0.35) benign(0.011) TCGA-A2-A0YT-01 1 237756934 237756934 A T RYR2 Missense_Mutation p.E1478D 0.10 benign(0.115) TCGA-A2-A0YT-01 20 35788533 35788533 C T MROH8 Missense_Mutation p.R259H 0.25 tolerated(0.06) benign(0.033) TCGA-A2-A0YT-01 22 17623996 17623996 C T CECR5 Missense_Mutation p.R188H 0.66 tolerated(0.12) benign(0.01) TCGA-A2-A0YT-01 22 18185061 18185061 G A BCL2L13 Missense_Mutation p.R170H 0.51 deleterious(0.02) benign(0.196) TCGA-A2-A0YT-01 2 179452261 179452261 C G TTN Missense_Mutation p.V21259L 0.31 TCGA-A2-A0YT-01 2 54753679 54753679 C T SPTBN1 Missense_Mutation p.R42W 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-A2-A0YT-01 3 113507649 113507649 G C ATP6V1A Missense_Mutation p.S269T 0.14 tolerated(0.12) benign(0.12) TCGA-A2-A0YT-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.62 deleterious(0.02) probably_damaging(0.959) TCGA-A2-A0YT-01 3 63965739 63965739 A C ATXN7 Silent p.S216S 0.27 TCGA-A2-A0YT-01 3 7728066 7728066 G C GRM7 Intron 0.12 TCGA-A2-A0YT-01 4 126411918 126411918 A - FAT4 Frame_Shift_Del p.K4648Nfs*10 0.08 TCGA-A2-A0YT-01 4 143094874 143094874 T G INPP4B Missense_Mutation p.I424L 0.16 tolerated(0.09) benign(0.13) TCGA-A2-A0YT-01 4 144380559 144380559 T C GAB1 Missense_Mutation p.I566T 0.13 deleterious(0) probably_damaging(1) TCGA-A2-A0YT-01 4 62801665 62801665 C G LPHN3 Missense_Mutation p.T706R 0.10 deleterious(0) probably_damaging(1) TCGA-A2-A0YT-01 4 6882722 6882722 A T KIAA0232 3'UTR 0.22 TCGA-A2-A0YT-01 5 140564537 140564537 C A PCDHB16 3'UTR 0.22 TCGA-A2-A0YT-01 5 158139182 158139182 G C EBF1 Missense_Mutation p.A510G 0.08 tolerated_low_confidence(0.11) benign(0.007) TCGA-A2-A0YT-01 6 26234817 26234817 C A HIST1H1D Silent p.G115G 0.09 TCGA-A2-A0YT-01 6 29141621 29141621 T C OR2J2 Missense_Mutation p.L70P 0.18 deleterious(0) probably_damaging(0.998) TCGA-A2-A0YT-01 6 56483578 56483578 C A DST Intron 0.08 TCGA-A2-A0YT-01 6 64431547 64431547 C T EYS Missense_Mutation p.E2794K 0.07 tolerated(0.29) benign(0.142) TCGA-A2-A0YT-01 7 151945659 151945660 - T KMT2C Frame_Shift_Ins p.N621* 0.33 TCGA-A2-A0YT-01 7 86988567 86988567 T C CROT Missense_Mutation p.I82T 0.05 deleterious(0.02) benign(0.25) TCGA-A2-A0YT-01 7 930646 930646 C T GET4 Missense_Mutation p.S183F 0.22 tolerated(0.08) benign(0.062) TCGA-A2-A0YT-01 8 100182268 100182268 T C VPS13B Missense_Mutation p.I737T 0.05 deleterious(0) benign(0.145) TCGA-A2-A0YT-01 8 14412342 14412342 G A SGCZ Nonsense_Mutation p.R45* 0.58 TCGA-A2-A0YT-01 8 145107769 145107769 G C OPLAH Missense_Mutation p.P1018R 0.15 tolerated(0.08) benign(0.072) TCGA-A2-A0YT-01 8 38021097 38021098 TC - LSM1 3'UTR 0.48 TCGA-A2-A0YT-01 8 97258103 97258103 C T MTERFD1 Silent p.V294V 0.05 TCGA-A2-A0YT-01 9 102626186 102626186 A T NR4A3 3'UTR 0.31 TCGA-A2-A0YT-01 9 131246313 131246313 C T ODF2 Missense_Mutation p.R362C 0.23 deleterious(0) probably_damaging(0.992) TCGA-A2-A0YT-01 9 85640687 85640687 T C RASEF Intron 0.25 TCGA-A2-A0YT-01 X 119293026 119293026 C A RHOXF2 Nonsense_Mutation p.S62* 0.45 TCGA-A2-A0YT-01 X 122536950 122536950 G C GRIA3 Splice_Site p.X395_splice 0.18 TCGA-A2-A0YT-01 X 13778585 13778585 G A OFD1 Missense_Mutation p.S669N 0.45 tolerated(0.12) benign(0.079) TCGA-A2-A0YT-01 X 20070998 20070998 C G MAP7D2 Missense_Mutation p.R198P 0.12 tolerated(0.15) probably_damaging(0.971) TCGA-A2-A0YT-01 X 35820494 35820494 C A MAGEB16 Missense_Mutation p.P61T 0.47 tolerated(1) benign(0) TCGA-A2-A0YT-01 X 41419042 41419042 G A CASK Missense_Mutation p.S576L 0.37 tolerated(0.17) benign(0) TCGA-A2-A0YT-01 X 64957138 64957138 G A MSN Missense_Mutation p.E397K 0.33 tolerated(0.32) benign(0.405) TCGA-A2-A1FV-01 10 100013398 100013398 G T LOXL4 Missense_Mutation p.R583S 0.32 deleterious(0) probably_damaging(1) TCGA-A2-A1FV-01 10 112838897 112838897 G A ADRA2A Silent p.Q381Q 0.60 TCGA-A2-A1FV-01 10 135099012 135099012 C A TUBGCP2 Missense_Mutation p.A643S 0.22 tolerated(0.32) benign(0.163) TCGA-A2-A1FV-01 10 88419754 88419754 C T OPN4 Silent p.V312V 0.05 TCGA-A2-A1FV-01 12 130856213 130856213 T - PIWIL1 3'UTR 0.48 TCGA-A2-A1FV-01 12 54448950 54448950 G A HOXC4 Silent p.P252P 0.60 TCGA-A2-A1FV-01 12 72037937 72037937 G T ZFC3H1 Missense_Mutation p.Q481K 0.41 deleterious(0.03) benign(0.197) TCGA-A2-A1FV-01 14 61997145 61997145 C T RP11-47I22.4 Silent p.Y36Y 0.17 TCGA-A2-A1FV-01 15 23444016 23444016 G A AC100757.1 5'Flank 0.47 TCGA-A2-A1FV-01 15 33961576 33961576 C T RYR3 Nonsense_Mutation p.Q1881* 0.46 TCGA-A2-A1FV-01 16 16255417 16255417 G A ABCC6 Missense_Mutation p.L1171F 0.57 deleterious(0) probably_damaging(0.986) TCGA-A2-A1FV-01 16 68842417 68842418 - G CDH1 Frame_Shift_Ins p.P160Rfs*8 0.46 TCGA-A2-A1FV-01 17 32683553 32683554 - C CCL13 Frame_Shift_Ins p.S4Lfs*36 0.31 TCGA-A2-A1FV-01 17 40091966 40091966 C T TTC25 RNA 0.37 TCGA-A2-A1FV-01 17 42266336 42266336 A T TMUB2 Intron 0.53 TCGA-A2-A1FV-01 17 48248012 48248012 A G SGCA Missense_Mutation p.D323G 0.44 deleterious(0.02) possibly_damaging(0.595) TCGA-A2-A1FV-01 17 72739280 72739280 G A RAB37 Missense_Mutation p.A92T 0.26 deleterious(0) probably_damaging(0.987) TCGA-A2-A1FV-01 19 10398280 10398280 G A ICAM4 Intron 0.48 TCGA-A2-A1FV-01 19 19379464 19379464 G A TM6SF2 Missense_Mutation p.A195V 0.41 tolerated(0.39) benign(0.003) TCGA-A2-A1FV-01 1 110086977 110086977 G A GPR61 Missense_Mutation p.A445T 0.26 tolerated_low_confidence(0.59) benign(0) TCGA-A2-A1FV-01 1 248224884 248224884 A G OR2L3 Missense_Mutation p.T301A 0.45 tolerated(0.06) benign(0.007) TCGA-A2-A1FV-01 1 28975208 28975208 T C RNU11 RNA 0.39 TCGA-A2-A1FV-01 1 43212929 43212929 C G LEPRE1 Missense_Mutation p.R690P 0.40 deleterious_low_confidence(0.02) benign(0.001) TCGA-A2-A1FV-01 1 54479914 54479914 G A LDLRAD1 Missense_Mutation p.T66I 0.28 tolerated(0.07) benign(0.017) TCGA-A2-A1FV-01 1 85397158 85397158 T G MCOLN2 Missense_Mutation p.I477L 0.42 tolerated(0.54) benign(0.001) TCGA-A2-A1FV-01 20 1209137 1209137 T C RAD21L1 Silent p.L14L 0.52 TCGA-A2-A1FV-01 20 35060343 35060343 C T DLGAP4 Missense_Mutation p.H75Y 0.42 deleterious(0) possibly_damaging(0.671) TCGA-A2-A1FV-01 20 58381222 58381222 G C PHACTR3 Missense_Mutation p.R434P 0.14 deleterious(0) probably_damaging(1) TCGA-A2-A1FV-01 20 61943014 61943014 T C COL20A1 Missense_Mutation p.L526P 0.17 deleterious(0) probably_damaging(0.999) TCGA-A2-A1FV-01 2 182765477 182765477 T G SSFA2 Missense_Mutation p.N186K 0.56 deleterious(0) probably_damaging(0.999) TCGA-A2-A1FV-01 2 233655446 233655446 C T GIGYF2 Nonsense_Mutation p.R273* 0.55 TCGA-A2-A1FV-01 3 122419979 122419979 C G PARP14 Missense_Mutation p.L860V 0.48 tolerated(0.53) benign(0.088) TCGA-A2-A1FV-01 3 133524816 133524816 G A SRPRB Missense_Mutation p.V42M 0.36 deleterious(0.01) benign(0.373) TCGA-A2-A1FV-01 4 123227196 123227197 - A KIAA1109 Frame_Shift_Ins p.R3280Kfs*10 0.32 TCGA-A2-A1FV-01 5 153143997 153143997 C T GRIA1 Silent p.S619S 0.28 TCGA-A2-A1FV-01 5 153175111 153175111 C T GRIA1 Intron 0.25 TCGA-A2-A1FV-01 5 37310654 37310654 C G NUP155 Missense_Mutation p.K876N 0.30 deleterious(0.03) benign(0.434) TCGA-A2-A1FV-01 6 146240555 146240555 G A SHPRH Nonsense_Mutation p.R1361* 0.44 TCGA-A2-A1FV-01 6 149275038 149275038 G A UST Missense_Mutation p.E160K 0.17 tolerated(0.55) benign(0.031) TCGA-A2-A1FV-01 6 167787875 167787876 CT - TCP10 Frame_Shift_Del p.E251Vfs*31 0.39 TCGA-A2-A1FV-01 6 96986667 96986667 T C UFL1 Missense_Mutation p.M380T 0.25 deleterious(0) benign(0.342) TCGA-A2-A1FV-01 7 2834581 2834581 C T GNA12 Missense_Mutation p.R169Q 0.23 deleterious(0.05) possibly_damaging(0.621) TCGA-A2-A1FV-01 8 68130367 68130367 C T ARFGEF1 Missense_Mutation p.E1449K 0.21 deleterious(0) probably_damaging(0.947) TCGA-A2-A1FV-01 8 74717957 74717957 C T UBE2W Missense_Mutation p.R164Q 0.46 deleterious(0.03) possibly_damaging(0.784) TCGA-A2-A1FV-01 8 97172653 97172653 G T GDF6 Missense_Mutation p.P90T 0.16 tolerated(0.08) benign(0.129) TCGA-A2-A1FV-01 9 112151535 112151535 G A PTPN3 Missense_Mutation p.T744M 0.49 deleterious(0) probably_damaging(1) TCGA-A2-A1FV-01 9 113219551 113219551 G A SVEP1 Missense_Mutation p.P1220S 0.23 benign(0.057) TCGA-A2-A1FV-01 9 77354721 77354721 A G TRPM6 Missense_Mutation p.I1802T 0.56 deleterious(0) probably_damaging(0.994) TCGA-A2-A1FV-01 9 86617422 86617422 A T RMI1 Silent p.T507T 0.05 TCGA-A2-A1FV-01 9 86617623 86617623 C T RMI1 Silent p.F574F 0.20 TCGA-A2-A1FV-01 X 128657222 128657222 C T SMARCA1 Silent p.A42A 0.37 TCGA-A2-A1FV-01 X 27766015 27766015 C T DCAF8L2 Missense_Mutation p.L335F 0.55 tolerated(0.1) possibly_damaging(0.723) TCGA-A2-A1FV-01 X 40990740 40990741 AG - USP9X Frame_Shift_Del p.E93Ifs*10 0.41 TCGA-A2-A1FV-01 X 46618240 46618240 G A SLC9A7 Silent p.L75L 0.27 TCGA-A2-A1FV-01 X 48456261 48456261 G A WDR13 5'UTR 0.32 TCGA-A2-A1FV-01 X 51487897 51487897 G A GSPT2 Missense_Mutation p.G392E 0.10 deleterious(0) probably_damaging(0.982) TCGA-A2-A1FW-01 10 88476372 88476372 C T LDB3 Missense_Mutation p.T512I 0.21 deleterious(0) probably_damaging(0.979) TCGA-A2-A1FW-01 11 116740898 116740898 G A SIK3 Intron 0.25 TCGA-A2-A1FW-01 11 17545007 17545007 C A USH1C Nonsense_Mutation p.E260* 0.15 TCGA-A2-A1FW-01 11 57080520 57080520 G C TNKS1BP1 Missense_Mutation p.P548A 0.23 tolerated(0.1) benign(0.062) TCGA-A2-A1FW-01 11 65744012 65744012 C T SART1 Silent p.G573G 0.36 TCGA-A2-A1FW-01 12 106715293 106715293 C A TCP11L2 Silent p.G148G 0.16 TCGA-A2-A1FW-01 12 117494644 117494644 C T TESC Missense_Mutation p.R59Q 0.15 deleterious(0.03) probably_damaging(0.976) TCGA-A2-A1FW-01 12 52844400 52844400 C T KRT6B Missense_Mutation p.R182Q 0.29 deleterious(0.02) benign(0.446) TCGA-A2-A1FW-01 14 21467657 21467660 CTCA - SLC39A2 Frame_Shift_Del p.T19Wfs*24 0.28 TCGA-A2-A1FW-01 14 31605749 31605749 G C HECTD1 Nonsense_Mutation p.Y1034* 0.20 TCGA-A2-A1FW-01 14 60591901 60591901 T G PCNXL4 Silent p.P770P 0.23 TCGA-A2-A1FW-01 14 64608223 64608223 T G SYNE2 Missense_Mutation p.I5047M 0.26 probably_damaging(0.916) TCGA-A2-A1FW-01 14 67671595 67671595 T G FAM71D Missense_Mutation p.F234C 0.17 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-A2-A1FW-01 14 93397599 93397599 G A CHGA Silent p.A120A 0.26 TCGA-A2-A1FW-01 15 43513033 43513033 C A EPB42 5'UTR 0.25 TCGA-A2-A1FW-01 15 45448061 45448061 C A DUOX1 Missense_Mutation p.H1212Q 0.26 deleterious(0.01) benign(0.138) TCGA-A2-A1FW-01 15 49044602 49044602 G T CEP152 Missense_Mutation p.P1137H 0.46 tolerated(0.08) possibly_damaging(0.808) TCGA-A2-A1FW-01 15 52643662 52643662 G T MYO5A Nonsense_Mutation p.S1213* 0.22 TCGA-A2-A1FW-01 15 74177166 74177166 G T TBC1D21 Missense_Mutation p.V138F 0.29 tolerated(0.06) possibly_damaging(0.45) TCGA-A2-A1FW-01 15 89659692 89659692 A G ABHD2 Missense_Mutation p.Y45C 0.51 tolerated(0.07) possibly_damaging(0.566) TCGA-A2-A1FW-01 16 2580551 2580551 T A CEMP1 Missense_Mutation p.Q175L 0.24 deleterious_low_confidence(0.04) benign(0.145) TCGA-A2-A1FW-01 16 68011676 68011676 C T DPEP3 Silent p.S296S 0.18 TCGA-A2-A1FW-01 17 27417858 27417858 C T MYO18A Silent p.L1758L 0.06 TCGA-A2-A1FW-01 17 29276342 29276342 G A ADAP2 Missense_Mutation p.R232H 0.24 deleterious(0) probably_damaging(1) TCGA-A2-A1FW-01 17 3119269 3119269 G A OR1A1 Missense_Mutation p.A119T 0.31 deleterious(0) probably_damaging(1) TCGA-A2-A1FW-01 17 40837254 40837254 C T CNTNAP1 Silent p.F177F 0.41 TCGA-A2-A1FW-01 17 56350197 56350197 G C MPO Missense_Mutation p.I568M 0.29 deleterious(0.01) possibly_damaging(0.765) TCGA-A2-A1FW-01 17 56350223 56350223 G C MPO Missense_Mutation p.Q560E 0.29 deleterious(0) probably_damaging(1) TCGA-A2-A1FW-01 17 60351236 60351236 G A TBC1D3P2 RNA 0.22 TCGA-A2-A1FW-01 17 60768334 60768334 A G MRC2 Missense_Mutation p.N1346S 0.13 tolerated(0.33) possibly_damaging(0.626) TCGA-A2-A1FW-01 17 62049998 62049998 G A SCN4A Silent p.Y68Y 0.19 TCGA-A2-A1FW-01 17 63156439 63156439 C A RGS9 Silent p.G98G 0.03 TCGA-A2-A1FW-01 19 14076542 14076542 A C RFX1 Missense_Mutation p.L670R 0.26 deleterious(0) possibly_damaging(0.903) TCGA-A2-A1FW-01 19 17001214 17001214 G A F2RL3 Missense_Mutation p.A314T 0.25 tolerated(0.59) benign(0.131) TCGA-A2-A1FW-01 19 17937697 17937697 C A JAK3 Missense_Mutation p.C1077F 0.20 deleterious(0) probably_damaging(1) TCGA-A2-A1FW-01 19 21991460 21991460 C A ZNF43 Missense_Mutation p.G460V 0.22 deleterious(0) probably_damaging(1) TCGA-A2-A1FW-01 19 32845865 32845865 T C ZNF507 Splice_Site p.X709_splice 0.34 TCGA-A2-A1FW-01 19 42855839 42855839 C T MEGF8 Silent p.F942F 0.45 TCGA-A2-A1FW-01 19 463919 463919 C T ODF3L2 Silent p.S265S 0.52 TCGA-A2-A1FW-01 19 8028356 8028356 G - ELAVL1 3'UTR 0.14 TCGA-A2-A1FW-01 1 151345141 151345141 C T SELENBP1 5'UTR 0.43 TCGA-A2-A1FW-01 1 182025787 182025787 G A ZNF648 Silent p.C453C 0.18 TCGA-A2-A1FW-01 1 201009077 201009077 C T CACNA1S Missense_Mutation p.G1835E 0.11 tolerated_low_confidence(0.13) benign(0.002) TCGA-A2-A1FW-01 1 201013506 201013506 C T CACNA1S Missense_Mutation p.E1583K 0.13 deleterious(0.04) probably_damaging(0.968) TCGA-A2-A1FW-01 1 201013546 201013546 C A CACNA1S Missense_Mutation p.E1569D 0.11 deleterious(0) probably_damaging(0.926) TCGA-A2-A1FW-01 1 202746147 202746147 C G KDM5B Missense_Mutation p.E94Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-A2-A1FW-01 1 202746192 202746192 C G KDM5B Missense_Mutation p.D79H 0.13 deleterious(0) probably_damaging(0.956) TCGA-A2-A1FW-01 1 202746222 202746222 C T KDM5B Missense_Mutation p.D69N 0.11 tolerated(0.1) benign(0.316) TCGA-A2-A1FW-01 1 206611342 206611342 C T SRGAP2 Silent p.N468N 0.77 TCGA-A2-A1FW-01 1 231885724 231885724 G T DISC1 Silent p.L390L 0.18 TCGA-A2-A1FW-01 1 240071786 240071786 C A CHRM3 Silent p.S345S 0.24 TCGA-A2-A1FW-01 1 247752384 247752384 C T OR2G2 Silent p.F241F 0.11 TCGA-A2-A1FW-01 1 65157044 65157044 C T CACHD1 Missense_Mutation p.P1158S 0.31 tolerated(0.07) benign(0.132) TCGA-A2-A1FW-01 1 9079361 9079361 C T SLC2A7 Missense_Mutation p.A115T 0.36 tolerated(0.14) benign(0.052) TCGA-A2-A1FW-01 20 31975264 31975264 G A CDK5RAP1 Missense_Mutation p.A207V 0.20 deleterious(0) probably_damaging(0.984) TCGA-A2-A1FW-01 20 3687150 3687150 C T SIGLEC1 Missense_Mutation p.G85S 0.06 tolerated(0.08) possibly_damaging(0.864) TCGA-A2-A1FW-01 20 3687268 3687268 G A SIGLEC1 Silent p.F45F 0.20 TCGA-A2-A1FW-01 20 51872726 51872726 C T TSHZ2 Missense_Mutation p.T910M 0.23 deleterious(0) probably_damaging(0.999) TCGA-A2-A1FW-01 20 9561437 9561437 G A PAK7 Silent p.H115H 0.24 TCGA-A2-A1FW-01 21 31965011 31965011 G A KRTAP6-3 Missense_Mutation p.G76S 0.26 unknown(0) TCGA-A2-A1FW-01 22 23047214 23047214 C T IGLV3-22 Silent p.T84T 0.31 TCGA-A2-A1FW-01 22 32555133 32555133 C T C22orf42 Missense_Mutation p.V24M 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-A2-A1FW-01 22 38642090 38642090 C A TMEM184B Missense_Mutation p.R70L 0.16 tolerated(0.28) benign(0.038) TCGA-A2-A1FW-01 2 121729565 121729565 G A GLI2 Missense_Mutation p.A370T 0.30 tolerated(0.47) benign(0.001) TCGA-A2-A1FW-01 2 179632645 179632645 C G TTN Missense_Mutation p.K3104N 0.24 TCGA-A2-A1FW-01 2 183847589 183847589 C A NCKAP1 Missense_Mutation p.D396Y 0.22 deleterious(0.02) possibly_damaging(0.847) TCGA-A2-A1FW-01 2 20189833 20189833 C G WDR35 5'UTR 0.33 TCGA-A2-A1FW-01 2 242795103 242795104 - G PDCD1 Frame_Shift_Ins p.T36Hfs*70 0.15 TCGA-A2-A1FW-01 3 11064046 11064046 C T SLC6A1 Silent p.D202D 0.16 TCGA-A2-A1FW-01 3 112326098 112326098 G A CCDC80 Missense_Mutation p.R811C 0.28 deleterious(0) probably_damaging(0.999) TCGA-A2-A1FW-01 3 190026027 190026027 C T CLDN1 3'UTR 0.23 TCGA-A2-A1FW-01 3 195507485 195507485 A T MUC4 Missense_Mutation p.S3656T 0.10 benign(0.044) TCGA-A2-A1FW-01 3 24003871 24003871 C T NR1D2 Silent p.S307S 0.26 TCGA-A2-A1FW-01 3 38047679 38047679 C T VILL Missense_Mutation p.P714L 0.26 tolerated(0.05) benign(0) TCGA-A2-A1FW-01 3 64518862 64518862 A G ADAMTS9 Missense_Mutation p.S1900P 0.25 tolerated(0.13) possibly_damaging(0.718) TCGA-A2-A1FW-01 4 107249280 107249280 A G AIMP1 Missense_Mutation p.M115V 0.30 tolerated(0.36) benign(0) TCGA-A2-A1FW-01 4 123111228 123111228 G T KIAA1109 Nonsense_Mutation p.E299* 0.23 TCGA-A2-A1FW-01 4 48038079 48038079 G A NIPAL1 Missense_Mutation p.A375T 0.31 tolerated(0.58) benign(0.008) TCGA-A2-A1FW-01 4 48139295 48139295 T G TEC 3'UTR 0.50 TCGA-A2-A1FW-01 5 115329524 115329524 T A AQPEP Silent p.I449I 0.21 TCGA-A2-A1FW-01 5 138287476 138287476 C G SIL1 Splice_Site p.X288_splice 0.74 TCGA-A2-A1FW-01 5 176916576 176916576 C T PDLIM7 Silent p.A229A 0.15 TCGA-A2-A1FW-01 5 33963829 33963829 C T SLC45A2 Missense_Mutation p.M285I 0.21 tolerated(0.22) benign(0.004) TCGA-A2-A1FW-01 6 31378422 31378422 G A MICA Missense_Mutation p.R58H 0.24 tolerated(1) benign(0.008) TCGA-A2-A1FW-01 6 46660616 46660616 A T TDRD6 Missense_Mutation p.Y1584F 0.18 tolerated(1) benign(0.044) TCGA-A2-A1FW-01 7 100684336 100684336 A G MUC17 Silent p.P3213P 0.36 TCGA-A2-A1FW-01 7 148525884 148525884 G A EZH2 Silent p.D191D 0.07 TCGA-A2-A1FW-01 7 84670042 84670042 G A SEMA3D Silent p.L331L 0.15 TCGA-A2-A1FW-01 7 94034183 94034183 T A COL1A2 Silent p.P137P 0.40 TCGA-A2-A1FW-01 8 110287602 110287602 C G NUDCD1 Missense_Mutation p.M384I 0.32 tolerated(0.48) benign(0.005) TCGA-A2-A1FW-01 8 145947416 145947416 G A ZNF251 Silent p.H543H 0.13 TCGA-A2-A1FW-01 8 69011939 69011939 G A PREX2 Missense_Mutation p.S859N 0.16 tolerated(0.24) benign(0.001) TCGA-A2-A1FW-01 9 120474689 120474689 G T TLR4 Missense_Mutation p.D95Y 0.16 deleterious(0) possibly_damaging(0.735) TCGA-A2-A1FW-01 9 71628808 71628808 G T PRKACG Silent p.G67G 0.10 TCGA-A2-A1FW-01 X 102612872 102612872 T G WBP5 Missense_Mutation p.L87R 0.20 deleterious(0) probably_damaging(0.955) TCGA-A2-A1FW-01 X 106096864 106096864 T C TBC1D8B Missense_Mutation p.I746T 0.17 deleterious(0) probably_damaging(0.992) TCGA-A2-A1FW-01 X 15349901 15349901 C T PIGA Missense_Mutation p.S51N 0.40 tolerated(0.25) benign(0.011) TCGA-A2-A1FW-01 X 53652126 53652126 A G HUWE1 Missense_Mutation p.I528T 0.17 possibly_damaging(0.782) TCGA-A2-A1FX-01 11 66039373 66039373 G A RAB1B Intron 0.63 TCGA-A2-A1FX-01 14 92562444 92562444 G A ATXN3 Missense_Mutation p.S76F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A1FX-01 16 30793176 30793176 T C ZNF629 Missense_Mutation p.S825G 0.17 tolerated(0.48) benign(0) TCGA-A2-A1FX-01 17 73836636 73836636 C T UNC13D Silent p.K235K 0.32 TCGA-A2-A1FX-01 19 18100644 18100644 C T KCNN1 Silent p.A430A 0.15 TCGA-A2-A1FX-01 19 7712614 7712614 C G STXBP2 Missense_Mutation p.S567C 0.27 deleterious(0) benign(0.093) TCGA-A2-A1FX-01 1 204438798 204438798 C T PIK3C2B Missense_Mutation p.E45K 0.66 tolerated_low_confidence(0.06) probably_damaging(0.98) TCGA-A2-A1FX-01 1 242451687 242451687 G T PLD5 Missense_Mutation p.H158N 0.57 tolerated(0.92) benign(0.05) TCGA-A2-A1FX-01 1 249152783 249152783 C G ZNF692 5'UTR 0.74 TCGA-A2-A1FX-01 21 31859634 31859634 A T KRTAP19-2 Missense_Mutation p.F12I 0.39 deleterious_low_confidence(0) unknown(0) TCGA-A2-A1FX-01 21 46020889 46020889 T A KRTAP10-7 Missense_Mutation p.V123D 0.33 deleterious(0) unknown(0) TCGA-A2-A1FX-01 2 230456329 230456329 C A DNER Missense_Mutation p.Q184H 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-A2-A1FX-01 2 27430252 27430252 C T SLC5A6 Silent p.P89P 0.42 TCGA-A2-A1FX-01 2 27464244 27464244 C T CAD Missense_Mutation p.R1955W 0.14 deleterious(0.02) probably_damaging(0.978) TCGA-A2-A1FX-01 3 141164333 141164333 G A ZBTB38 Missense_Mutation p.E1035K 0.38 deleterious(0.04) probably_damaging(0.984) TCGA-A2-A1FX-01 3 155232586 155232586 C A PLCH1 Nonsense_Mutation p.E508* 0.24 TCGA-A2-A1FX-01 3 38519699 38519699 C T ACVR2B Silent p.I146I 0.28 TCGA-A2-A1FX-01 3 40351249 40351249 T A EIF1B 5'UTR 0.23 TCGA-A2-A1FX-01 5 148980752 148980752 C A ARHGEF37 Missense_Mutation p.Q90K 0.07 tolerated(0.36) benign(0.088) TCGA-A2-A1FX-01 6 16306707 16306707 C T ATXN1 Silent p.A767A 0.11 TCGA-A2-A1FX-01 6 33631568 33631568 C G ITPR3 Missense_Mutation p.C353W 0.20 tolerated(0.19) benign(0.01) TCGA-A2-A1FX-01 6 96651390 96651390 T C FUT9 Missense_Mutation p.L120S 0.10 deleterious(0) probably_damaging(0.993) TCGA-A2-A1FX-01 7 122342081 122342081 G A RNF148 Nonsense_Mutation p.R242* 0.12 TCGA-A2-A1FX-01 7 98527687 98527687 C T TRRAP Missense_Mutation p.S1084L 0.35 benign(0.004) TCGA-A2-A1FX-01 X 105132399 105132399 G A NRK Missense_Mutation p.R122Q 0.16 tolerated(0.14) benign(0.146) TCGA-A2-A1FX-01 X 128631871 128631871 A T SMARCA1 Missense_Mutation p.S485R 0.36 deleterious(0) possibly_damaging(0.482) TCGA-A2-A1FX-01 X 20074872 20074872 C T MAP7D2 Missense_Mutation p.R137H 0.09 deleterious(0) probably_damaging(1) TCGA-A2-A1FX-01 X 37850278 37850278 C A CXorf27 Missense_Mutation p.D62E 0.08 tolerated(0.14) benign(0.176) TCGA-A2-A1FZ-01 10 102683947 102683947 A G FAM178A Missense_Mutation p.S397G 0.14 tolerated(0.45) benign(0.03) TCGA-A2-A1FZ-01 10 112583260 112583260 G T RBM20 Missense_Mutation p.M1113I 0.33 tolerated(0.38) benign(0.004) TCGA-A2-A1FZ-01 10 62671216 62671216 G A RHOBTB1 Missense_Mutation p.R29C 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-A2-A1FZ-01 11 123624554 123624554 G A OR6X1 Nonsense_Mutation p.R225* 0.21 TCGA-A2-A1FZ-01 11 128628222 128628222 G A FLI1 Splice_Site p.X77_splice 0.23 TCGA-A2-A1FZ-01 11 71906691 71906691 C T FOLR1 Silent p.N131N 0.26 TCGA-A2-A1FZ-01 12 69135710 69135710 T C NUP107 Missense_Mutation p.C874R 0.26 deleterious(0) probably_damaging(0.924) TCGA-A2-A1FZ-01 14 38060747 38060748 - T FOXA1 Frame_Shift_Ins p.L415Afs*143 0.17 TCGA-A2-A1FZ-01 15 22956052 22956052 G A CYFIP1 Intron 0.15 TCGA-A2-A1FZ-01 15 75131031 75131031 T C ULK3 Missense_Mutation p.N352S 0.32 tolerated(0.29) benign(0.025) TCGA-A2-A1FZ-01 17 17106185 17106185 G A PLD6 Missense_Mutation p.P219S 0.18 deleterious(0.03) benign(0.005) TCGA-A2-A1FZ-01 17 66420616 66420616 C A WIPI1 Intron 0.30 TCGA-A2-A1FZ-01 18 71797870 71797870 G C FBXO15 Nonsense_Mutation p.S119* 0.24 TCGA-A2-A1FZ-01 19 2408555 2408555 G A TMPRSS9 Silent p.P314P 0.25 TCGA-A2-A1FZ-01 19 54941109 54941109 C G TTYH1 Missense_Mutation p.T286S 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A1FZ-01 1 151137721 151137721 G A LYSMD1 Missense_Mutation p.S5F 0.21 deleterious(0.02) unknown(0) TCGA-A2-A1FZ-01 1 52227617 52227617 A T OSBPL9 Missense_Mutation p.H261L 0.15 tolerated(0.41) benign(0) TCGA-A2-A1FZ-01 20 60937537 60937537 G A LAMA5 Silent p.G123G 0.27 TCGA-A2-A1FZ-01 22 45579367 45579367 G A NUP50 Silent p.K390K 0.23 TCGA-A2-A1FZ-01 2 167141168 167141171 ACAA - SCN9A Frame_Shift_Del p.F589Cfs*25 0.19 TCGA-A2-A1FZ-01 2 234967568 234967568 C A SPP2 Missense_Mutation p.P100H 0.19 deleterious(0) probably_damaging(0.997) TCGA-A2-A1FZ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.43 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A1FZ-01 4 186545129 186545129 T C SORBS2 Missense_Mutation p.E581G 0.14 deleterious(0) probably_damaging(0.997) TCGA-A2-A1FZ-01 5 133996823 133996823 G A SEC24A Missense_Mutation p.A38T 0.23 tolerated_low_confidence(1) benign(0.002) TCGA-A2-A1FZ-01 5 178459857 178459857 T A ZNF879 Missense_Mutation p.L303H 0.47 deleterious(0) probably_damaging(1) TCGA-A2-A1FZ-01 6 100911486 100911486 A T SIM1 5'UTR 0.19 TCGA-A2-A1FZ-01 6 135511266 135511266 T C MYB Missense_Mutation p.V103A 0.13 deleterious(0.02) benign(0.071) TCGA-A2-A1FZ-01 7 139083442 139083445 ATGT - LUC7L2 Splice_Site p.X151_splice 0.15 TCGA-A2-A1FZ-01 8 144995749 144995749 C T PLEC Missense_Mutation p.R2884Q 0.30 benign(0.093) TCGA-A2-A1FZ-01 8 99039661 99039661 A C MATN2 Missense_Mutation p.I654L 0.31 tolerated(0.65) benign(0.001) TCGA-A2-A1FZ-01 9 140710464 140710464 G A EHMT1 Silent p.A1108A 0.24 TCGA-A2-A1FZ-01 X 115574821 115574821 T C SLC6A14 Silent p.C173C 0.28 TCGA-A2-A1G0-01 10 5227099 5227099 C T AKR1CL1 5'Flank 0.24 TCGA-A2-A1G0-01 11 40137268 40137268 G C LRRC4C Missense_Mutation p.A192G 0.34 deleterious(0) probably_damaging(0.996) TCGA-A2-A1G0-01 12 108618544 108618544 C T WSCD2 Silent p.F237F 0.29 TCGA-A2-A1G0-01 12 13715969 13715969 G T GRIN2B Missense_Mutation p.S1401R 0.27 tolerated(0.22) possibly_damaging(0.494) TCGA-A2-A1G0-01 12 53876974 53876974 C T MAP3K12 Splice_Site p.X538_splice 0.29 TCGA-A2-A1G0-01 12 81013171 81013171 C T PTPRQ Nonsense_Mutation p.R1743* 0.06 TCGA-A2-A1G0-01 13 33247483 33247487 TTAAA - PDS5B Frame_Shift_Del p.L281Efs*3 0.21 TCGA-A2-A1G0-01 16 31474092 31474092 G A ARMC5 Silent p.Q408Q 0.22 TCGA-A2-A1G0-01 16 31474093 31474093 G T ARMC5 Missense_Mutation p.A409S 0.22 tolerated(0.27) benign(0.243) TCGA-A2-A1G0-01 16 3293864 3293864 A G MEFV Silent p.H596H 0.26 TCGA-A2-A1G0-01 16 68867353 68867353 A G CDH1 Missense_Mutation p.N867S 0.39 tolerated(0.43) benign(0.113) TCGA-A2-A1G0-01 17 12032516 12032517 AC - MAP2K4 Frame_Shift_Del p.Q319Sfs*11 0.29 TCGA-A2-A1G0-01 1 145368509 145368509 C T NBPF10 Missense_Mutation p.S3496L 0.07 possibly_damaging(0.876) TCGA-A2-A1G0-01 22 51121781 51121781 G A SHANK3 Missense_Mutation p.R300H 0.40 probably_damaging(1) TCGA-A2-A1G0-01 2 168104843 168104843 C T XIRP2 Missense_Mutation p.P2314L 0.24 probably_damaging(1) TCGA-A2-A1G0-01 2 27802528 27802528 C A C2orf16 Nonsense_Mutation p.S1030* 0.19 TCGA-A2-A1G0-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.27 deleterious(0.04) probably_damaging(0.96) TCGA-A2-A1G0-01 4 122737961 122737961 C T EXOSC9 Missense_Mutation p.P441S 0.23 tolerated_low_confidence(0.85) unknown(0) TCGA-A2-A1G0-01 4 13601548 13601548 C T BOD1L1 Missense_Mutation p.D2326N 0.44 probably_damaging(0.955) TCGA-A2-A1G0-01 4 25005065 25005065 C T LGI2 3'UTR 0.22 TCGA-A2-A1G0-01 5 175540973 175540973 C T FAM153B Missense_Mutation p.P285L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-A2-A1G0-01 6 10410352 10410352 G C TFAP2A Missense_Mutation p.Q88E 0.28 tolerated(0.21) probably_damaging(0.977) TCGA-A2-A1G0-01 7 12728294 12728294 A G ARL4A Missense_Mutation p.R139G 0.18 tolerated(0.05) benign(0.004) TCGA-A2-A1G0-01 8 86572560 86572560 A T REXO1L1P 3'UTR 0.11 TCGA-A2-A1G0-01 X 12937900 12937900 T - TLR8 Frame_Shift_Del p.L248* 0.24 TCGA-A2-A1G0-01 X 83730290 83730290 T G HDX Missense_Mutation p.Q39P 0.26 deleterious(0) probably_damaging(0.994) TCGA-A2-A1G1-01 10 13378339 13378339 C T SEPHS1 Silent p.A103A 0.30 TCGA-A2-A1G1-01 11 119185262 119185262 C T MCAM Missense_Mutation p.G166R 0.48 deleterious(0) probably_damaging(1) TCGA-A2-A1G1-01 11 65826508 65826508 G A SF3B2 Missense_Mutation p.A392T 0.18 tolerated(0.06) possibly_damaging(0.787) TCGA-A2-A1G1-01 16 3827658 3827658 T C CREBBP Missense_Mutation p.N705S 0.31 benign(0.325) TCGA-A2-A1G1-01 16 69201026 69201027 - ATGAATCAG CIRH1A In_Frame_Ins p.E629_D631dup 0.10 TCGA-A2-A1G1-01 17 39551243 39551243 G T KRT31 Silent p.I318I 0.46 TCGA-A2-A1G1-01 17 45664603 45664603 G A NPEPPS Missense_Mutation p.A330T 0.08 tolerated(0.11) possibly_damaging(0.733) TCGA-A2-A1G1-01 17 4689690 4689690 C T VMO1 5'UTR 0.67 TCGA-A2-A1G1-01 17 61898729 61898729 C A FTSJ3 Missense_Mutation p.S624I 0.11 tolerated(0.12) probably_damaging(0.95) TCGA-A2-A1G1-01 17 73259535 73259536 TG - MRPS7 Frame_Shift_Del p.C152* 0.32 TCGA-A2-A1G1-01 17 7577609 7577609 C T TP53 Splice_Site p.X225_splice 0.48 TCGA-A2-A1G1-01 18 33785062 33785062 G A MOCOS Silent p.Q347Q 0.24 TCGA-A2-A1G1-01 19 11475316 11475316 C T DKFZP761J1410 Missense_Mutation p.R412W 0.22 tolerated_low_confidence(0.29) benign(0) TCGA-A2-A1G1-01 19 44511217 44511217 A C ZNF230 5'UTR 0.26 TCGA-A2-A1G1-01 1 232942812 232942812 G A MAP10 Silent p.P681P 0.21 TCGA-A2-A1G1-01 1 247978326 247978326 A C OR14A16 Missense_Mutation p.Y236D 0.09 deleterious(0) possibly_damaging(0.532) TCGA-A2-A1G1-01 1 47119504 47119504 G A ATPAF1 Silent p.V198V 0.23 TCGA-A2-A1G1-01 20 2636124 2636124 T C NOP56 Silent p.A241A 0.08 TCGA-A2-A1G1-01 21 18971026 18971026 T G BTG3 Missense_Mutation p.H187P 0.44 tolerated(0.11) probably_damaging(1) TCGA-A2-A1G1-01 22 39448754 39448754 G A APOBEC3F 3'UTR 0.30 TCGA-A2-A1G1-01 2 12880637 12880637 G A TRIB2 Missense_Mutation p.G250E 0.33 deleterious(0) probably_damaging(1) TCGA-A2-A1G1-01 2 168102346 168102346 G T XIRP2 Missense_Mutation p.V1482L 0.19 benign(0.183) TCGA-A2-A1G1-01 2 179467132 179467132 C T TTN Missense_Mutation p.E18333K 0.10 TCGA-A2-A1G1-01 2 179469435 179469435 C G TTN Silent p.G18127G 0.26 TCGA-A2-A1G1-01 2 201467067 201467070 AAGT - AOX1 Splice_Site p.X166_splice 0.34 TCGA-A2-A1G1-01 2 8437260 8437260 G A LINC00299 RNA 0.46 TCGA-A2-A1G1-01 3 125727702 125727702 C T SLC41A3 Missense_Mutation p.R376Q 0.52 tolerated(0.19) probably_damaging(0.997) TCGA-A2-A1G1-01 3 141161656 141161656 A C ZBTB38 Silent p.G142G 0.14 TCGA-A2-A1G1-01 3 183707109 183707109 G A ABCC5 Silent p.S64S 0.09 TCGA-A2-A1G1-01 4 37446047 37446047 C A KIAA1239 Missense_Mutation p.Q813K 0.52 deleterious(0.01) benign(0.242) TCGA-A2-A1G1-01 5 170239126 170239130 GAGAA - GABRP Frame_Shift_Del p.R396Qfs*7 0.39 TCGA-A2-A1G1-01 5 172507761 172507761 C G CREBRF 5'UTR 0.18 TCGA-A2-A1G1-01 5 19473332 19473332 C A CDH18 3'UTR 0.16 TCGA-A2-A1G1-01 5 56177035 56177035 C T MAP3K1 Missense_Mutation p.P769S 0.15 tolerated(0.06) benign(0.017) TCGA-A2-A1G1-01 5 64814460 64814460 T A CENPK Missense_Mutation p.I218F 0.25 deleterious(0.03) possibly_damaging(0.736) TCGA-A2-A1G1-01 7 100187251 100187251 C G FBXO24 5'Flank 0.29 TCGA-A2-A1G1-01 7 120446741 120446741 C A TSPAN12 Missense_Mutation p.K158N 0.17 deleterious(0) probably_damaging(0.913) TCGA-A2-A1G1-01 7 121659196 121659196 A G PTPRZ1 Missense_Mutation p.H1621R 0.13 deleterious(0.02) possibly_damaging(0.883) TCGA-A2-A1G1-01 9 100888910 100888910 T G CORO2A Missense_Mutation p.H456P 0.15 tolerated(0.23) benign(0.05) TCGA-A2-A1G1-01 9 14307139 14307139 C G NFIB Silent p.L137L 0.16 TCGA-A2-A1G1-01 X 18911702 18911702 G T PHKA2 Missense_Mutation p.S1203R 0.18 deleterious(0) possibly_damaging(0.673) TCGA-A2-A1G1-01 X 3242907 3242907 C A MXRA5 Missense_Mutation p.M273I 0.21 tolerated(1) benign(0) TCGA-A2-A1G1-01 X 41057778 41057778 T A USP9X Intron 0.32 TCGA-A2-A1G6-01 10 108357185 108357185 C T SORCS1 Silent p.T1063T 0.06 TCGA-A2-A1G6-01 15 44890572 44890572 C A SPG11 Splice_Site p.X1298_splice 0.08 TCGA-A2-A1G6-01 18 31326495 31326495 C T ASXL3 Missense_Mutation p.A2228V 0.08 probably_damaging(0.999) TCGA-A2-A1G6-01 1 205819079 205819079 G C PM20D1 Missense_Mutation p.S41C 0.11 tolerated(0.08) benign(0.401) TCGA-A2-A1G6-01 20 42965985 42965985 T A R3HDML Missense_Mutation p.M63K 0.15 tolerated(0.33) benign(0.016) TCGA-A2-A1G6-01 22 31337929 31337929 A G MORC2 Missense_Mutation p.I154T 0.09 deleterious(0) benign(0.341) TCGA-A2-A1G6-01 22 50886795 50886795 C T SBF1 Missense_Mutation p.V1744M 0.12 tolerated(0.11) benign(0.023) TCGA-A2-A1G6-01 5 139838797 139838797 C G ANKHD1 Missense_Mutation p.T510S 0.06 unknown(0) TCGA-A2-A1G6-01 X 84301511 84301511 A C APOOL Silent p.A25A 0.05 TCGA-A2-A1G6-01 X 84301512 84301512 G C APOOL Missense_Mutation p.A26P 0.05 deleterious(0) probably_damaging(0.948) TCGA-A2-A259-01 12 31244760 31244760 C T DDX11 Silent p.I399I 0.11 TCGA-A2-A259-01 12 80928679 80928679 G C PTPRQ Missense_Mutation p.D946H 0.21 deleterious(0) probably_damaging(0.999) TCGA-A2-A259-01 13 52332339 52332339 C T WDFY2 Missense_Mutation p.T359I 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-A2-A259-01 15 54025259 54025259 G A WDR72 Nonsense_Mutation p.R30* 0.22 TCGA-A2-A259-01 15 75676715 75676732 TATTTTCTGCCAGGTAAA - SIN3A In_Frame_Del p.L1023_N1029delinsH 0.41 TCGA-A2-A259-01 17 5286507 5286507 C G RABEP1 Missense_Mutation p.P860A 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A2-A259-01 17 5289454 5289454 C T NUP88 3'UTR 0.09 TCGA-A2-A259-01 17 5289527 5289527 C G NUP88 Nonstop_Mutation p.*742Sext*9 0.10 TCGA-A2-A259-01 17 5290719 5290719 C T NUP88 Missense_Mutation p.D635N 0.08 tolerated(0.12) possibly_damaging(0.698) TCGA-A2-A259-01 17 5290786 5290786 C T NUP88 Silent p.R612R 0.10 TCGA-A2-A259-01 19 10781834 10781834 A G ILF3 Missense_Mutation p.D63G 0.22 tolerated(0.08) benign(0.013) TCGA-A2-A259-01 19 14706127 14706127 G A CLEC17A Missense_Mutation p.A149T 0.19 tolerated(0.42) benign(0) TCGA-A2-A259-01 19 58904526 58904526 G A RPS5 Missense_Mutation p.E98K 0.19 deleterious(0.02) probably_damaging(0.929) TCGA-A2-A259-01 1 237805 237805 A G AP006222.2 RNA 0.12 TCGA-A2-A259-01 20 4771185 4771185 C T RASSF2 Missense_Mutation p.R150H 0.14 tolerated(0.48) benign(0.017) TCGA-A2-A259-01 21 10998293 10998293 G A TPTE RNA 0.13 TCGA-A2-A259-01 2 162815009 162815009 C T SLC4A10 Missense_Mutation p.P936S 0.20 deleterious(0.01) probably_damaging(1) TCGA-A2-A259-01 2 27258498 27258498 G A TMEM214 Missense_Mutation p.G180E 0.08 deleterious(0.03) probably_damaging(0.931) TCGA-A2-A259-01 3 125297815 125297815 C G OSBPL11 Missense_Mutation p.A160P 0.20 tolerated(0.09) possibly_damaging(0.859) TCGA-A2-A259-01 3 138290122 138290122 C T CEP70 Missense_Mutation p.R49K 0.19 tolerated(0.83) benign(0.009) TCGA-A2-A259-01 5 56183245 56183270 AATTGCAGATTTTGGAGCTGCAGCCA - MAP3K1 Frame_Shift_Del p.I1386Vfs*25 0.26 TCGA-A2-A259-01 5 56184093 56184093 G C MAP3K1 Missense_Mutation p.W1433S 0.17 deleterious(0) probably_damaging(0.999) TCGA-A2-A259-01 6 46976736 46976736 A C GPR110 Missense_Mutation p.V812G 0.10 deleterious(0) possibly_damaging(0.661) TCGA-A2-A259-01 7 152027750 152027750 G A KMT2C Nonsense_Mutation p.Q109* 0.24 TCGA-A2-A259-01 8 123964746 123964746 G A ZHX2 Silent p.K332K 0.66 TCGA-A2-A259-01 8 133116377 133116377 T C HHLA1 Silent p.G39G 0.09 TCGA-A2-A259-01 8 86572625 86572625 A G REXO1L1P 3'UTR 0.07 TCGA-A2-A259-01 9 136699429 136699429 G A VAV2 Silent p.D138D 0.21 TCGA-A2-A259-01 X 148039966 148039966 C T AFF2 Missense_Mutation p.H890Y 0.21 deleterious(0.01) benign(0.285) TCGA-A2-A259-01 X 153696522 153696522 G T PLXNA3 Silent p.V1306V 0.20 TCGA-A2-A259-01 X 70511766 70511766 G A NONO Missense_Mutation p.G98R 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-A2-A25A-01 10 101601847 101601847 C G ABCC2 Silent p.L1246L 0.17 TCGA-A2-A25A-01 10 103771512 103771512 G T C10orf76 Missense_Mutation p.Q267K 0.22 tolerated(0.32) benign(0.01) TCGA-A2-A25A-01 10 128841364 128841364 C T DOCK1 Nonsense_Mutation p.Q692* 0.07 TCGA-A2-A25A-01 10 30602612 30602612 C G MTPAP Missense_Mutation p.E559Q 0.08 tolerated(0.09) possibly_damaging(0.623) TCGA-A2-A25A-01 10 75488216 75488216 C A RP11-464F9.1 RNA 0.09 TCGA-A2-A25A-01 10 94836960 94836960 T A CYP26A1 Missense_Mutation p.W465R 0.16 deleterious(0) probably_damaging(1) TCGA-A2-A25A-01 11 113934723 113934723 G T ZBTB16 Missense_Mutation p.R234L 0.19 tolerated(0.71) benign(0.015) TCGA-A2-A25A-01 11 124266647 124266647 T C OR8B3 Missense_Mutation p.I201V 0.17 tolerated_low_confidence(0.19) benign(0.014) TCGA-A2-A25A-01 11 3026616 3026616 C G CARS Missense_Mutation p.E733Q 0.09 tolerated(0.06) possibly_damaging(0.555) TCGA-A2-A25A-01 11 45992799 45992799 G A PHF21A Silent p.T160T 0.08 TCGA-A2-A25A-01 11 55595570 55595570 G A OR5L2 Silent p.L292L 0.18 TCGA-A2-A25A-01 11 56113597 56113597 G A OR8K1 Missense_Mutation p.G28E 0.11 tolerated_low_confidence(1) benign(0) TCGA-A2-A25A-01 11 62592892 62592892 C T STX5 Intron 0.09 TCGA-A2-A25A-01 11 6570103 6570103 C T DNHD1 Missense_Mutation p.H2443Y 0.12 benign(0.006) TCGA-A2-A25A-01 11 66358864 66358864 G C CCDC87 Missense_Mutation p.I541M 0.10 deleterious(0) possibly_damaging(0.871) TCGA-A2-A25A-01 12 115118941 115118941 G A TBX3 Missense_Mutation p.P134S 0.10 deleterious(0) probably_damaging(0.998) TCGA-A2-A25A-01 12 53164973 53164973 C - KRT76 Frame_Shift_Del p.A432Lfs*40 0.23 TCGA-A2-A25A-01 12 53461956 53461956 G T SPRYD3 Missense_Mutation p.L276M 0.32 deleterious(0.03) probably_damaging(0.979) TCGA-A2-A25A-01 12 57975311 57975311 C G KIF5A Missense_Mutation p.L957V 0.20 tolerated_low_confidence(0.79) benign(0) TCGA-A2-A25A-01 13 114324059 114324059 C T GRK1 Silent p.L253L 0.10 TCGA-A2-A25A-01 13 39425928 39425928 C T FREM2 Missense_Mutation p.S2283L 0.07 deleterious(0) possibly_damaging(0.816) TCGA-A2-A25A-01 13 39454659 39454659 G A FREM2 Missense_Mutation p.R3082H 0.09 tolerated(0.12) possibly_damaging(0.456) TCGA-A2-A25A-01 13 88327755 88327755 G A SLITRK5 Missense_Mutation p.A38T 0.08 tolerated(0.57) benign(0.008) TCGA-A2-A25A-01 14 24911634 24911634 G T SDR39U1 Missense_Mutation p.T14K 0.20 tolerated(0.39) benign(0.002) TCGA-A2-A25A-01 14 59939707 59939707 C G L3HYPDH Missense_Mutation p.L347F 0.14 deleterious(0.01) probably_damaging(1) TCGA-A2-A25A-01 15 38852115 38852115 G A RASGRP1 Missense_Mutation p.H43Y 0.06 deleterious(0.01) benign(0.023) TCGA-A2-A25A-01 15 41476332 41476332 C T EXD1 Missense_Mutation p.E448K 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-A2-A25A-01 15 56535379 56535379 G T RFX7 Silent p.P35P 0.19 TCGA-A2-A25A-01 15 68438944 68438944 G T PIAS1 Missense_Mutation p.R245L 0.24 deleterious(0) probably_damaging(0.997) TCGA-A2-A25A-01 16 68862107 68862107 G A CDH1 Missense_Mutation p.R732Q 0.20 deleterious(0.04) probably_damaging(0.972) TCGA-A2-A25A-01 17 27002030 27002030 G T SUPT6H Missense_Mutation p.D130Y 0.20 deleterious(0) unknown(0) TCGA-A2-A25A-01 17 27208299 27208299 C T FLOT2 Missense_Mutation p.E337K 0.17 deleterious(0) possibly_damaging(0.611) TCGA-A2-A25A-01 17 30815538 30815538 G T CDK5R1 Silent p.R300R 0.24 TCGA-A2-A25A-01 17 45750492 45750492 G T KPNB1 Missense_Mutation p.L552F 0.22 tolerated(0.08) benign(0.118) TCGA-A2-A25A-01 17 71375584 71375584 C T SDK2 Intron 0.21 TCGA-A2-A25A-01 18 20596862 20596862 G T RBBP8 Missense_Mutation p.G810V 0.22 deleterious(0) probably_damaging(0.965) TCGA-A2-A25A-01 18 21761133 21761133 G T OSBPL1A Silent p.L596L 0.19 TCGA-A2-A25A-01 18 70417376 70417376 C T NETO1 Missense_Mutation p.D488N 0.08 tolerated_low_confidence(0.11) possibly_damaging(0.734) TCGA-A2-A25A-01 19 14508007 14508007 C A CD97 Silent p.P199P 0.08 TCGA-A2-A25A-01 19 18309636 18309636 G A RAB3A Missense_Mutation p.S124L 0.13 deleterious(0) possibly_damaging(0.9) TCGA-A2-A25A-01 19 19603408 19603408 C T GATAD2A Nonsense_Mutation p.R141* 0.21 TCGA-A2-A25A-01 19 2415770 2415770 C T TMPRSS9 Missense_Mutation p.S525F 0.22 tolerated(0.13) benign(0.2) TCGA-A2-A25A-01 19 35793545 35793545 G A MAG Missense_Mutation p.E389K 0.11 deleterious(0.03) probably_damaging(0.978) TCGA-A2-A25A-01 19 45912003 45912003 A T CD3EAP Missense_Mutation p.K259N 0.12 tolerated(0.19) benign(0.002) TCGA-A2-A25A-01 19 46283223 46283223 C T DMPK Missense_Mutation p.R32K 0.22 deleterious_low_confidence(0.03) benign(0) TCGA-A2-A25A-01 1 12638772 12638772 G A DHRS3 Silent p.T224T 0.13 TCGA-A2-A25A-01 1 152082290 152082290 C T TCHH Missense_Mutation p.E1135K 0.06 unknown(0) TCGA-A2-A25A-01 1 155429604 155429604 C G ASH1L Missense_Mutation p.E1690D 0.12 tolerated_low_confidence(0.06) probably_damaging(0.991) TCGA-A2-A25A-01 1 171250038 171250038 C G FMO1 Silent p.L247L 0.05 TCGA-A2-A25A-01 1 197099176 197099176 C T ASPM Missense_Mutation p.G833E 0.10 deleterious(0) probably_damaging(0.992) TCGA-A2-A25A-01 1 209791254 209791254 C T LAMB3 Missense_Mutation p.E1017K 0.20 deleterious(0.05) benign(0.047) TCGA-A2-A25A-01 1 226573297 226573297 C T PARP1 Missense_Mutation p.D307N 0.12 tolerated(0.23) benign(0.052) TCGA-A2-A25A-01 1 248487524 248487524 G C OR2M7 Missense_Mutation p.A116G 0.09 tolerated(0.35) possibly_damaging(0.896) TCGA-A2-A25A-01 1 27992872 27992872 G A IFI6 3'UTR 0.12 TCGA-A2-A25A-01 1 35919218 35919218 A T KIAA0319L Missense_Mutation p.L618Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-A2-A25A-01 1 40150207 40150207 G T HPCAL4 Missense_Mutation p.S23R 0.22 deleterious(0.02) benign(0.243) TCGA-A2-A25A-01 1 46212018 46212018 G A IPP Silent p.L22L 0.09 TCGA-A2-A25A-01 1 53073967 53073967 G T GPX7 Missense_Mutation p.W145L 0.20 deleterious(0) probably_damaging(1) TCGA-A2-A25A-01 1 53099298 53099298 G T FAM159A Missense_Mutation p.D45Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-A2-A25A-01 1 56962293 56962293 G C PPAP2B Missense_Mutation p.P289R 0.09 deleterious(0.02) benign(0.002) TCGA-A2-A25A-01 20 1905495 1905495 C G SIRPA Silent p.L391L 0.08 TCGA-A2-A25A-01 20 30064218 30064218 G C REM1 5'UTR 0.10 TCGA-A2-A25A-01 20 47865238 47865238 G A ZNFX1 Silent p.C1441C 0.16 TCGA-A2-A25A-01 21 34860938 34860938 C T DNAJC28 Missense_Mutation p.E255K 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-A2-A25A-01 22 22318301 22318301 C A TOP3B Nonsense_Mutation p.E400* 0.10 TCGA-A2-A25A-01 22 29095912 29095912 C G CHEK2 Missense_Mutation p.E351Q 0.12 deleterious(0) probably_damaging(0.974) TCGA-A2-A25A-01 22 36633192 36633192 C G APOL2 Intron 0.12 TCGA-A2-A25A-01 22 40859320 40859320 G A MKL1 Intron 0.11 TCGA-A2-A25A-01 22 50500001 50500001 G A MLC1 3'UTR 0.32 TCGA-A2-A25A-01 2 101885785 101885785 C T CNOT11 Silent p.F481F 0.05 TCGA-A2-A25A-01 2 10269209 10269209 G A RRM2 Missense_Mutation p.M375I 0.11 deleterious_low_confidence(0.03) benign(0.043) TCGA-A2-A25A-01 2 11752468 11752468 T G GREB1 Intron 0.53 TCGA-A2-A25A-01 2 180835527 180835527 G A CWC22 Nonsense_Mutation p.Q333* 0.06 TCGA-A2-A25A-01 2 203834753 203834753 G C CARF Missense_Mutation p.K355N 0.10 deleterious(0) probably_damaging(0.999) TCGA-A2-A25A-01 2 23980399 23980399 C T ATAD2B Missense_Mutation p.E1323K 0.08 tolerated(0.41) benign(0.122) TCGA-A2-A25A-01 2 240016733 240016733 G T HDAC4 Missense_Mutation p.F746L 0.29 deleterious(0.01) benign(0.14) TCGA-A2-A25A-01 2 25978922 25978922 G A ASXL2 Missense_Mutation p.S334L 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A25A-01 2 85555050 85555050 G T TGOLN2 Silent p.V12V 0.29 TCGA-A2-A25A-01 3 121305394 121305394 G C ARGFX Missense_Mutation p.D299H 0.09 deleterious(0.05) benign(0.046) TCGA-A2-A25A-01 3 124732342 124732342 G A HEG1 Missense_Mutation p.S694L 0.07 tolerated(0.06) benign(0.018) TCGA-A2-A25A-01 3 176744225 176744225 C T TBL1XR1 Missense_Mutation p.G485E 0.08 deleterious(0.02) possibly_damaging(0.482) TCGA-A2-A25A-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.17 deleterious(0.04) probably_damaging(0.96) TCGA-A2-A25A-01 3 184049831 184049831 C T EIF4G1 Silent p.L1532L 0.13 TCGA-A2-A25A-01 3 185393593 185393593 C T IGF2BP2 Silent p.K307K 0.10 TCGA-A2-A25A-01 3 196547424 196547424 G A PAK2 Missense_Mutation p.E446K 0.10 deleterious(0) probably_damaging(0.993) TCGA-A2-A25A-01 3 48895107 48895107 C G SLC25A20 3'UTR 0.10 TCGA-A2-A25A-01 3 49052888 49052888 G C WDR6 3'UTR 0.12 TCGA-A2-A25A-01 4 104062196 104062196 C T CENPE Silent p.Q1843Q 0.09 TCGA-A2-A25A-01 4 151023640 151023640 C T DCLK2 Silent p.Y144Y 0.14 TCGA-A2-A25A-01 4 170912532 170912532 G A MFAP3L Silent p.V409V 0.09 TCGA-A2-A25A-01 5 139682632 139682632 C T PFDN1 Silent p.L9L 0.09 TCGA-A2-A25A-01 5 140580938 140580938 G A PCDHB11 Missense_Mutation p.V531M 0.16 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-A2-A25A-01 5 141244076 141244076 T C PCDH1 Missense_Mutation p.D607G 0.21 deleterious(0) probably_damaging(0.999) TCGA-A2-A25A-01 5 38933388 38933388 G T OSMR Missense_Mutation p.D928Y 0.19 deleterious(0.02) probably_damaging(0.952) TCGA-A2-A25A-01 6 135644428 135644428 G C AHI1 Nonsense_Mutation p.S1067* 0.08 TCGA-A2-A25A-01 6 135644432 135644432 G A AHI1 Nonsense_Mutation p.R1066* 0.09 TCGA-A2-A25A-01 6 160511135 160511135 G T IGF2R Missense_Mutation p.D2219Y 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A25A-01 6 161570318 161570318 G A AGPAT4 Missense_Mutation p.S223L 0.18 tolerated(0.13) benign(0.392) TCGA-A2-A25A-01 6 28268765 28268765 G C PGBD1 Missense_Mutation p.K378N 0.08 deleterious(0) probably_damaging(0.997) TCGA-A2-A25A-01 6 55147109 55147109 C T HCRTR2 Nonsense_Mutation p.R398* 0.26 TCGA-A2-A25A-01 7 134743984 134743984 C T AGBL3 Nonsense_Mutation p.Q636* 0.08 TCGA-A2-A25A-01 7 142124249 142124249 C A TRBV6-8 Nonsense_Mutation p.E77* 0.14 TCGA-A2-A25A-01 7 143701740 143701740 C G OR6B1 Silent p.S217S 0.12 TCGA-A2-A25A-01 7 30673355 30673355 C G GARS Missense_Mutation p.S700C 0.09 deleterious(0.02) possibly_damaging(0.836) TCGA-A2-A25A-01 7 44556490 44556490 C T NPC1L1 Missense_Mutation p.E1138K 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-A2-A25A-01 7 57194313 57194313 T A ZNF479 Missense_Mutation p.N51I 0.07 deleterious(0) probably_damaging(0.999) TCGA-A2-A25A-01 7 86416405 86416405 G A GRM3 Missense_Mutation p.D433N 0.10 tolerated(0.39) benign(0.03) TCGA-A2-A25A-01 7 97487644 97487644 G A ASNS Silent p.L283L 0.07 TCGA-A2-A25A-01 8 120859311 120859311 C G DSCC1 Missense_Mutation p.E166Q 0.10 tolerated(0.17) benign(0.141) TCGA-A2-A25A-01 8 22464825 22464825 C G CCAR2 Silent p.L158L 0.17 TCGA-A2-A25A-01 8 90796316 90796316 G A RIPK2 Silent p.K326K 0.10 TCGA-A2-A25A-01 9 104314755 104314755 G A RNF20 Missense_Mutation p.E541K 0.08 tolerated(0.44) benign(0.292) TCGA-A2-A25A-01 9 112705025 112705025 C G PALM2 Missense_Mutation p.L186V 0.07 tolerated(0.07) benign(0.186) TCGA-A2-A25A-01 9 123171595 123171595 C T CDK5RAP2 Splice_Site p.X1472_splice 0.11 TCGA-A2-A25A-01 9 125023778 125023778 C T RBM18 5'UTR 0.15 TCGA-A2-A25A-01 9 134463349 134463349 C T RAPGEF1 Missense_Mutation p.E872K 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-A2-A25A-01 9 140510463 140510463 C T C9orf37 Nonsense_Mutation p.W63* 0.13 TCGA-A2-A25A-01 9 27213528 27213528 A G TEK Missense_Mutation p.N975S 0.09 deleterious(0.03) possibly_damaging(0.843) TCGA-A2-A25A-01 9 35738360 35738360 C T GBA2 Missense_Mutation p.G689E 0.13 deleterious(0) probably_damaging(1) TCGA-A2-A25A-01 9 84303175 84303175 G T TLE1 5'UTR 0.23 TCGA-A2-A25A-01 9 95163416 95163416 C G OGN Missense_Mutation p.D76H 0.06 deleterious(0.01) probably_damaging(0.976) TCGA-A2-A25A-01 X 102968564 102968564 C T GLRA4 Missense_Mutation p.A323T 0.11 tolerated(0.06) probably_damaging(1) TCGA-A2-A25A-01 X 118215165 118215165 G T KIAA1210 3'UTR 0.23 TCGA-A2-A25A-01 X 129263972 129263972 G C AIFM1 Missense_Mutation p.I581M 0.10 deleterious(0) benign(0.06) TCGA-A2-A25A-01 X 2408332 2408332 G A ZBED1 Silent p.I143I 0.12 TCGA-A2-A25A-01 X 30268639 30268639 G A MAGEB1 Missense_Mutation p.R10H 0.16 tolerated(0.09) probably_damaging(0.945) TCGA-A2-A25A-01 X 5821409 5821409 C A NLGN4X Missense_Mutation p.R437L 0.09 deleterious(0) probably_damaging(0.999) TCGA-A2-A25A-01 X 70345962 70345962 C G MED12 Missense_Mutation p.F833L 0.24 benign(0.05) TCGA-A2-A25A-01 X 71416703 71416703 G A PIN4 Missense_Mutation p.M87I 0.07 tolerated(0.23) benign(0.011) TCGA-A2-A25A-01 X 80371790 80371790 G T HMGN5 Silent p.A60A 0.20 TCGA-A2-A25B-01 10 100021960 100021960 C G LOXL4 Missense_Mutation p.W96C 0.18 deleterious(0) probably_damaging(0.996) TCGA-A2-A25B-01 10 18280128 18280128 G A SLC39A12 Missense_Mutation p.E440K 0.07 deleterious(0) probably_damaging(0.938) TCGA-A2-A25B-01 10 61023859 61023859 C G FAM13C Missense_Mutation p.R337P 0.19 deleterious(0) probably_damaging(1) TCGA-A2-A25B-01 10 8115852 8115853 AT - GATA3 Frame_Shift_Del p.M401Vfs*106 0.35 TCGA-A2-A25B-01 11 104971500 104971500 A T CARD17 Missense_Mutation p.V5D 0.20 tolerated(0.08) benign(0.114) TCGA-A2-A25B-01 11 121458742 121458742 G A SORL1 Silent p.T1276T 0.13 TCGA-A2-A25B-01 11 35333807 35333807 C T SLC1A2 Missense_Mutation p.A167T 0.10 tolerated(0.13) probably_damaging(0.951) TCGA-A2-A25B-01 11 49170190 49170190 C G FOLH1 Splice_Site p.X688_splice 0.16 TCGA-A2-A25B-01 11 58949292 58949292 G A DTX4 Missense_Mutation p.D98N 0.20 deleterious(0.03) probably_damaging(0.969) TCGA-A2-A25B-01 11 62559409 62559409 G A TMEM223 Missense_Mutation p.L20F 0.23 tolerated(0.71) benign(0.001) TCGA-A2-A25B-01 11 78381001 78381001 A G TENM4 Missense_Mutation p.I2130T 0.33 deleterious(0) possibly_damaging(0.878) TCGA-A2-A25B-01 11 89450625 89450625 T A TRIM77 Missense_Mutation p.L313H 0.35 tolerated(0.64) benign(0.047) TCGA-A2-A25B-01 12 111926436 111926436 C A ATXN2 Missense_Mutation p.G855V 0.05 benign(0.339) TCGA-A2-A25B-01 12 1137553 1137553 T C ERC1 Silent p.L162L 0.24 TCGA-A2-A25B-01 12 124074976 124074976 G A TMED2 Missense_Mutation p.R154Q 0.19 deleterious(0.03) possibly_damaging(0.675) TCGA-A2-A25B-01 12 22627752 22627752 G C C2CD5 Nonsense_Mutation p.S659* 0.32 TCGA-A2-A25B-01 12 38714770 38714770 A T ALG10B Missense_Mutation p.I393F 0.13 tolerated(0.35) benign(0.009) TCGA-A2-A25B-01 12 42864101 42864101 C G PRICKLE1 Missense_Mutation p.E65Q 0.07 deleterious(0) probably_damaging(1) TCGA-A2-A25B-01 12 49444310 49444310 G A KMT2D Missense_Mutation p.P1021S 0.12 benign(0.164) TCGA-A2-A25B-01 12 6344725 6344725 C G CD9 Silent p.T177T 0.27 TCGA-A2-A25B-01 12 6646882 6646882 G C GAPDH Missense_Mutation p.V220L 0.36 deleterious_low_confidence(0.01) benign(0.112) TCGA-A2-A25B-01 12 75737669 75737669 A G GLIPR1L1 Missense_Mutation p.Y124C 0.07 deleterious(0) probably_damaging(0.999) TCGA-A2-A25B-01 13 27333408 27333408 G A GPR12 Missense_Mutation p.S186F 0.25 deleterious(0.01) possibly_damaging(0.482) TCGA-A2-A25B-01 13 32863812 32863812 C T FRY Silent p.L2838L 0.18 TCGA-A2-A25B-01 13 75936460 75936460 C T TBC1D4 Missense_Mutation p.G261E 0.18 tolerated(0.19) benign(0.017) TCGA-A2-A25B-01 14 20612251 20612251 C G OR4N5 Silent p.A119A 0.12 TCGA-A2-A25B-01 14 42373411 42373411 A G LRFN5 3'UTR 0.35 TCGA-A2-A25B-01 14 93118118 93118118 G T RIN3 Missense_Mutation p.D242Y 0.18 deleterious(0) unknown(0) TCGA-A2-A25B-01 15 101009598 101009598 A T CERS3 Missense_Mutation p.I277N 0.03 deleterious(0) probably_damaging(0.963) TCGA-A2-A25B-01 15 34042179 34042179 G A RYR3 Splice_Site p.X2734_splice 0.09 TCGA-A2-A25B-01 15 42379619 42379619 G T PLA2G4D Missense_Mutation p.P45H 0.20 deleterious(0.01) possibly_damaging(0.781) TCGA-A2-A25B-01 15 42531871 42531871 C T TMEM87A Missense_Mutation p.M227I 0.25 deleterious(0) benign(0.239) TCGA-A2-A25B-01 15 52181319 52181319 G A TMOD3 Missense_Mutation p.G158D 0.15 tolerated(0.64) benign(0.012) TCGA-A2-A25B-01 15 84652079 84652079 G C ADAMTSL3 Missense_Mutation p.L1233F 0.12 tolerated(0.05) possibly_damaging(0.756) TCGA-A2-A25B-01 16 16418942 16418942 G C PKD1P1 RNA 0.36 TCGA-A2-A25B-01 16 20430635 20430635 C G ACSM5 Missense_Mutation p.I167M 0.10 deleterious(0.03) probably_damaging(0.938) TCGA-A2-A25B-01 16 28899040 28899040 G A ATP2A1 Missense_Mutation p.E309K 0.24 deleterious(0) probably_damaging(0.999) TCGA-A2-A25B-01 16 70954761 70954761 C A HYDIN Missense_Mutation p.R2506S 0.16 possibly_damaging(0.765) TCGA-A2-A25B-01 17 1582137 1582137 C T PRPF8 Silent p.L546L 0.32 TCGA-A2-A25B-01 17 18422903 18422903 G C FAM106A 3'Flank 0.51 TCGA-A2-A25B-01 17 33802057 33802057 T C SLFN12L Missense_Mutation p.D551G 0.07 tolerated(0.4) benign(0.139) TCGA-A2-A25B-01 17 37224150 37224150 C T PLXDC1 Silent p.A482A 0.07 TCGA-A2-A25B-01 17 41245390 41245390 C A BRCA1 Nonsense_Mutation p.E720* 0.78 TCGA-A2-A25B-01 17 66979929 66979929 T C ABCA9 Missense_Mutation p.K1521E 0.14 deleterious(0) probably_damaging(0.983) TCGA-A2-A25B-01 18 24497140 24497140 C A CHST9 Missense_Mutation p.A139S 0.25 tolerated(0.54) benign(0.001) TCGA-A2-A25B-01 18 34646885 34646885 A C KIAA1328 Silent p.S203S 0.26 TCGA-A2-A25B-01 18 45368141 45368141 G A SMAD2 3'UTR 0.35 TCGA-A2-A25B-01 18 48575132 48575132 T G SMAD4 Missense_Mutation p.L109R 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-A2-A25B-01 18 56278931 56278931 G C ALPK2 Missense_Mutation p.C33W 0.12 deleterious(0) probably_damaging(0.996) TCGA-A2-A25B-01 19 10291057 10291057 G A DNMT1 Silent p.P138P 0.29 TCGA-A2-A25B-01 19 11313275 11313275 G A DOCK6 Silent p.I1782I 0.32 TCGA-A2-A25B-01 19 12384716 12384730 CAGGGATGAATGACC - ZNF44 In_Frame_Del p.G162_L166del 0.18 TCGA-A2-A25B-01 19 38991499 38991499 G A RYR1 Missense_Mutation p.V2495M 0.33 benign(0.136) TCGA-A2-A25B-01 19 43585335 43585335 G A PSG2 Missense_Mutation p.P43L 0.14 tolerated(0.64) benign(0.341) TCGA-A2-A25B-01 19 55952073 55952073 C T SHISA7 Missense_Mutation p.R244Q 0.17 deleterious(0.04) possibly_damaging(0.557) TCGA-A2-A25B-01 19 56113865 56113865 G A ZNF524 Silent p.L129L 0.27 TCGA-A2-A25B-01 19 58773419 58773419 A G ZNF544 Missense_Mutation p.K483E 0.17 tolerated(0.19) benign(0.252) TCGA-A2-A25B-01 19 8808562 8808562 C A ACTL9 Nonsense_Mutation p.E164* 0.33 TCGA-A2-A25B-01 1 118039456 118039456 C T MAN1A2 Silent p.H452H 0.31 TCGA-A2-A25B-01 1 150469022 150469022 C T TARS2 Missense_Mutation p.S280F 0.16 deleterious(0) possibly_damaging(0.841) TCGA-A2-A25B-01 1 173780441 173780441 C T CENPL 5'UTR 0.12 TCGA-A2-A25B-01 1 181708366 181708366 C T CACNA1E Silent p.G1232G 0.03 TCGA-A2-A25B-01 1 204939845 204939845 C A NFASC Missense_Mutation p.Q369K 0.08 tolerated(0.21) possibly_damaging(0.654) TCGA-A2-A25B-01 1 211749238 211749238 G A SLC30A1 Missense_Mutation p.S339F 0.06 deleterious(0) probably_damaging(0.996) TCGA-A2-A25B-01 1 214171508 214171508 C G PROX1 Missense_Mutation p.P544A 0.09 tolerated(0.94) benign(0.038) TCGA-A2-A25B-01 1 220146645 220146645 A T EPRS Silent p.A1393A 0.06 TCGA-A2-A25B-01 1 224804809 224804809 T G CNIH3 5'UTR 0.13 TCGA-A2-A25B-01 1 237580371 237580371 G A RYR2 Missense_Mutation p.A266T 0.36 possibly_damaging(0.557) TCGA-A2-A25B-01 1 28233517 28233517 C A RPA2 Missense_Mutation p.K85N 0.50 deleterious(0.01) probably_damaging(0.991) TCGA-A2-A25B-01 1 32089153 32089153 G A HCRTR1 Silent p.R256R 0.42 TCGA-A2-A25B-01 20 57768481 57768481 C A ZNF831 Missense_Mutation p.Q803K 0.12 tolerated(0.17) benign(0.169) TCGA-A2-A25B-01 22 29442795 29442795 G A ZNRF3 Missense_Mutation p.C279Y 0.16 tolerated(0.13) possibly_damaging(0.474) TCGA-A2-A25B-01 22 29833558 29833558 T C RFPL1 5'Flank 0.56 TCGA-A2-A25B-01 2 101594255 101594255 G C NPAS2 Missense_Mutation p.M492I 0.23 tolerated(0.14) benign(0.005) TCGA-A2-A25B-01 2 102476287 102476287 G A MAP4K4 Silent p.E555E 0.15 TCGA-A2-A25B-01 2 135206253 135206253 C T MGAT5 Silent p.A687A 0.28 TCGA-A2-A25B-01 2 161159925 161159925 T - RBMS1 Frame_Shift_Del p.N159Ifs*92 0.26 TCGA-A2-A25B-01 2 163083083 163083083 A T FAP Missense_Mutation p.I47N 0.37 deleterious(0.01) benign(0.386) TCGA-A2-A25B-01 2 179408789 179408789 C A TTN Missense_Mutation p.A32028S 0.16 TCGA-A2-A25B-01 2 182766619 182766619 C A SSFA2 Missense_Mutation p.T280K 0.37 tolerated(0.07) possibly_damaging(0.543) TCGA-A2-A25B-01 2 183943850 183943850 C A DUSP19 Missense_Mutation p.D63E 0.24 deleterious(0.02) possibly_damaging(0.609) TCGA-A2-A25B-01 2 21232258 21232258 A C APOB Missense_Mutation p.N2494K 0.18 benign(0) TCGA-A2-A25B-01 2 27275875 27275875 G C AGBL5 Missense_Mutation p.G17R 0.55 deleterious(0) probably_damaging(0.999) TCGA-A2-A25B-01 2 38407861 38407861 A T CYP1B1-AS1 RNA 0.24 TCGA-A2-A25B-01 2 46313346 46313346 G A PRKCE Splice_Site p.X480_splice 0.18 TCGA-A2-A25B-01 3 10268072 10268072 C A IRAK2 Silent p.L409L 0.09 TCGA-A2-A25B-01 3 111983118 111983118 A T SLC9C1 Missense_Mutation p.H317Q 0.17 tolerated(0.58) benign(0.11) TCGA-A2-A25B-01 3 119134300 119134300 G A ARHGAP31 Missense_Mutation p.R1175H 0.21 deleterious(0) probably_damaging(0.999) TCGA-A2-A25B-01 3 124174098 124174098 G A KALRN Silent p.T1207T 0.22 TCGA-A2-A25B-01 3 126268739 126268739 G A C3orf22 Missense_Mutation p.A133V 0.07 tolerated(0.71) possibly_damaging(0.873) TCGA-A2-A25B-01 3 130380981 130380981 C G COL6A6 Missense_Mutation p.Q2111E 0.28 tolerated(0.13) benign(0.393) TCGA-A2-A25B-01 3 134884889 134884889 C A EPHB1 Silent p.S555S 0.39 TCGA-A2-A25B-01 3 170736404 170736404 C - SLC2A2 Frame_Shift_Del p.T9Pfs*22 0.29 TCGA-A2-A25B-01 3 38347782 38347782 T A SLC22A14 Missense_Mutation p.F89I 0.14 deleterious(0) possibly_damaging(0.874) TCGA-A2-A25B-01 4 123185538 123185538 G T KIAA1109 Nonsense_Mutation p.E2425* 0.17 TCGA-A2-A25B-01 4 123185539 123185539 A C KIAA1109 Missense_Mutation p.E2425A 0.16 probably_damaging(0.991) TCGA-A2-A25B-01 4 177136711 177136711 A T ASB5 3'UTR 0.10 TCGA-A2-A25B-01 4 39505533 39505533 C T UGDH Missense_Mutation p.D446N 0.11 tolerated(0.21) benign(0.067) TCGA-A2-A25B-01 4 77038880 77038881 AA - NUP54 Frame_Shift_Del p.F444Wfs*6 0.29 TCGA-A2-A25B-01 5 13700790 13700790 A T DNAH5 Missense_Mutation p.F4561Y 0.10 benign(0.418) TCGA-A2-A25B-01 5 140712271 140712271 G A PCDHGA1 Missense_Mutation p.D674N 0.28 deleterious_low_confidence(0.02) benign(0.176) TCGA-A2-A25B-01 5 145651050 145651050 C T RBM27 Missense_Mutation p.A934V 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-A2-A25B-01 5 6312795 6312795 A T CTD-2324F15.2 RNA 0.08 TCGA-A2-A25B-01 6 132206110 132206110 A G ENPP1 Missense_Mutation p.Y784C 0.11 deleterious(0) probably_damaging(0.992) TCGA-A2-A25B-01 6 17629305 17629305 G A NUP153 Missense_Mutation p.S1042F 0.11 deleterious(0) benign(0.379) TCGA-A2-A25B-01 6 17629309 17629309 T A NUP153 Missense_Mutation p.T1041S 0.11 tolerated(0.08) benign(0.017) TCGA-A2-A25B-01 6 27100352 27100352 T G HIST1H2BJ Missense_Mutation p.M60L 0.19 deleterious_low_confidence(0.01) benign(0.3) TCGA-A2-A25B-01 7 148288110 148288110 G T C7orf33 Silent p.G31G 0.14 TCGA-A2-A25B-01 7 48314636 48314636 C T ABCA13 Silent p.F1791F 0.44 TCGA-A2-A25B-01 7 65579837 65579837 G T CRCP 5'UTR 0.20 TCGA-A2-A25B-01 7 87069035 87069035 G A ABCB4 Missense_Mutation p.T560M 0.05 deleterious(0) probably_damaging(0.999) TCGA-A2-A25B-01 7 97481770 97481770 G A ASNS Missense_Mutation p.A496V 0.14 tolerated(0.23) benign(0.005) TCGA-A2-A25B-01 8 10383206 10383206 A G PRSS55 Silent p.G37G 0.29 TCGA-A2-A25B-01 8 11412989 11412989 G T BLK Missense_Mutation p.W256C 0.65 deleterious(0) probably_damaging(0.995) TCGA-A2-A25B-01 8 118165274 118165274 G C SLC30A8 Silent p.L121L 0.14 TCGA-A2-A25B-01 8 133078137 133078137 C T HHLA1 3'Flank 0.10 TCGA-A2-A25B-01 8 133910025 133910025 G A TG Missense_Mutation p.G1045R 0.36 tolerated(0.13) benign(0.026) TCGA-A2-A25B-01 8 133953777 133953777 G C TG Missense_Mutation p.Q1741H 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-A2-A25B-01 8 134237778 134237778 C A WISP1 Silent p.R252R 0.13 TCGA-A2-A25B-01 8 18457916 18457916 G T PSD3 Silent p.T813T 0.28 TCGA-A2-A25B-01 8 82355662 82355662 C A PMP2 Missense_Mutation p.V124L 0.19 deleterious(0.02) benign(0.014) TCGA-A2-A25B-01 8 90777697 90777697 C T RIPK2 Silent p.I152I 0.31 TCGA-A2-A25B-01 9 131860611 131860611 G A CRAT Silent p.H415H 0.16 TCGA-A2-A25B-01 9 6330991 6330991 A C TPD52L3 3'Flank 0.09 TCGA-A2-A25B-01 9 6533047 6533048 - GG GLDC Frame_Shift_Ins p.F1012Hfs*20 0.13 TCGA-A2-A25B-01 X 105168991 105168991 C A NRK Missense_Mutation p.P1095T 0.33 deleterious(0.02) benign(0.053) TCGA-A2-A25B-01 X 128641922 128641922 G T SMARCA1 Missense_Mutation p.S321Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-A2-A25B-01 X 129318289 129318289 C A RAB33A Missense_Mutation p.R97S 0.19 deleterious(0) probably_damaging(0.997) TCGA-A2-A25B-01 X 135288738 135288738 G A FHL1 Silent p.A49A 0.20 TCGA-A2-A25B-01 X 152835130 152835130 C A ATP2B3 Intron 0.17 TCGA-A2-A25B-01 X 3239251 3239251 G C MXRA5 Missense_Mutation p.A1492G 0.10 tolerated(0.06) benign(0.141) TCGA-A2-A25B-01 X 46696485 46696485 A T RP2 5'UTR 0.24 TCGA-A2-A25B-01 X 80377031 80377031 T C HMGN5 Intron 0.18 TCGA-A2-A25B-01 X 84502636 84502636 A G ZNF711 Missense_Mutation p.T20A 0.07 tolerated_low_confidence(0.4) benign(0.091) TCGA-A2-A25C-01 10 135099012 135099012 C A TUBGCP2 Missense_Mutation p.A643S 0.46 tolerated(0.32) benign(0.163) TCGA-A2-A25C-01 10 32311906 32311906 C A KIF5B Missense_Mutation p.S595I 0.05 deleterious(0) possibly_damaging(0.853) TCGA-A2-A25C-01 10 871120 871120 C A LARP4B Missense_Mutation p.A457S 0.06 tolerated(0.81) benign(0.007) TCGA-A2-A25C-01 11 124440230 124440230 G A OR8A1 Missense_Mutation p.C89Y 0.20 deleterious(0) possibly_damaging(0.897) TCGA-A2-A25C-01 11 62567771 62567771 G T NXF1 Intron 0.55 TCGA-A2-A25C-01 11 67186395 67186395 G T CARNS1 Missense_Mutation p.G178V 0.36 tolerated(0.1) benign(0.156) TCGA-A2-A25C-01 12 52709845 52709845 G T KRT83 Missense_Mutation p.A365D 0.30 deleterious(0) possibly_damaging(0.903) TCGA-A2-A25C-01 12 64062015 64062015 C G DPY19L2 Missense_Mutation p.R53S 0.20 tolerated_low_confidence(0.71) benign(0.003) TCGA-A2-A25C-01 13 26788550 26788550 C T RNF6 Missense_Mutation p.G490E 0.45 deleterious(0) probably_damaging(1) TCGA-A2-A25C-01 14 71445273 71445273 C A PCNX Missense_Mutation p.A740D 0.13 tolerated(0.06) probably_damaging(0.991) TCGA-A2-A25C-01 14 90650606 90650606 G T KCNK13 Missense_Mutation p.Q162H 0.16 deleterious(0.01) benign(0.002) TCGA-A2-A25C-01 15 25959052 25959052 A G ATP10A Missense_Mutation p.Y705H 0.50 tolerated(0.69) benign(0.003) TCGA-A2-A25C-01 15 99758792 99758792 C A TTC23 Splice_Site p.X194_splice 0.07 TCGA-A2-A25C-01 19 18273040 18273040 G T PIK3R2 Missense_Mutation p.K310N 0.38 tolerated(0.11) possibly_damaging(0.477) TCGA-A2-A25C-01 19 50548576 50548576 T C ZNF473 Silent p.C292C 0.43 TCGA-A2-A25C-01 1 158151378 158151378 C A CD1D Silent p.V65V 0.14 TCGA-A2-A25C-01 1 185962313 185962313 G C HMCN1 Splice_Site p.X1126_splice 0.20 TCGA-A2-A25C-01 1 225707102 225707102 C T ENAH Silent p.R200R 0.29 TCGA-A2-A25C-01 20 42265888 42265888 A G IFT52 Missense_Mutation p.N372S 0.42 deleterious(0.03) probably_damaging(0.947) TCGA-A2-A25C-01 21 22881175 22881175 C T NCAM2 Missense_Mutation p.T694M 0.27 deleterious(0.03) possibly_damaging(0.724) TCGA-A2-A25C-01 21 44282454 44282454 C A WDR4 Missense_Mutation p.K168N 0.31 deleterious(0) probably_damaging(1) TCGA-A2-A25C-01 2 179446724 179446724 G A TTN Silent p.T22124T 0.35 TCGA-A2-A25C-01 2 179465819 179465819 C A TTN Missense_Mutation p.K18604N 0.14 TCGA-A2-A25C-01 2 203881084 203881085 - A NBEAL1 5'UTR 0.23 TCGA-A2-A25C-01 3 148930428 148930428 C A CP Missense_Mutation p.K68N 0.36 deleterious(0) benign(0.144) TCGA-A2-A25C-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.39 tolerated(0.11) possibly_damaging(0.529) TCGA-A2-A25C-01 4 166403460 166403460 C T CPE Missense_Mutation p.L247F 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-A2-A25C-01 5 140801420 140801420 A G PCDHGA11 Missense_Mutation p.H209R 0.27 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-A2-A25C-01 5 94289001 94289001 T C MCTP1 Missense_Mutation p.I301M 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-A2-A25C-01 6 131602771 131602771 G A AKAP7 Missense_Mutation p.E318K 0.47 deleterious(0.03) benign(0.106) TCGA-A2-A25C-01 6 131921249 131921249 G A MED23 Nonsense_Mutation p.Q717* 0.55 TCGA-A2-A25C-01 6 149700327 149700327 G T TAB2 Missense_Mutation p.V426L 0.17 tolerated(0.42) benign(0.008) TCGA-A2-A25C-01 6 74229730 74229730 T C EEF1A1 Missense_Mutation p.H7R 0.28 deleterious_low_confidence(0) benign(0.239) TCGA-A2-A25C-01 7 132169630 132169630 T A PLXNA4 Intron 0.24 TCGA-A2-A25C-01 7 141365078 141365078 G A KIAA1147 Silent p.G287G 0.35 TCGA-A2-A25C-01 8 140715207 140715207 G A KCNK9 Missense_Mutation p.S10F 0.33 deleterious(0.04) benign(0.021) TCGA-A2-A25C-01 8 22108415 22108415 C T POLR3D 3'UTR 0.52 TCGA-A2-A25C-01 8 52339319 52339319 C G PXDNL Splice_Site p.X509_splice 0.10 TCGA-A2-A25C-01 9 125240172 125240172 A G OR1J1 Missense_Mutation p.F12L 0.28 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-A2-A25C-01 9 79118492 79118492 G T GCNT1 Missense_Mutation p.A399S 0.30 deleterious(0) possibly_damaging(0.822) TCGA-A2-A25D-01 10 94594490 94594490 C T EXOC6 Nonsense_Mutation p.R20* 0.28 TCGA-A2-A25D-01 11 17434216 17434216 G A ABCC8 Silent p.F851F 0.26 TCGA-A2-A25D-01 11 6789589 6789589 G A OR2AG2 Silent p.Y200Y 0.29 TCGA-A2-A25D-01 12 266274 266274 G A IQSEC3 Missense_Mutation p.G746E 0.42 deleterious(0) probably_damaging(0.999) TCGA-A2-A25D-01 12 26755633 26755633 T C ITPR2 Missense_Mutation p.N1157D 0.33 tolerated(0.7) benign(0) TCGA-A2-A25D-01 12 46754960 46754960 C T SLC38A2 Silent p.V485V 0.31 TCGA-A2-A25D-01 12 50188786 50188786 C T NCKAP5L Missense_Mutation p.E953K 0.19 deleterious(0.03) possibly_damaging(0.893) TCGA-A2-A25D-01 12 50297629 50297636 CCGCAGCC - FAIM2 5'UTR 0.31 TCGA-A2-A25D-01 12 53670885 53670885 C A ESPL1 Silent p.I653I 0.46 TCGA-A2-A25D-01 12 56362611 56362611 G - CDK2 Frame_Shift_Del p.V123Sfs*21 0.28 TCGA-A2-A25D-01 12 58114758 58114758 A C OS9 3'UTR 0.20 TCGA-A2-A25D-01 13 103382387 103382387 G C CCDC168 Missense_Mutation p.A2258G 0.40 deleterious(0.01) unknown(0) TCGA-A2-A25D-01 14 20876607 20876607 C T TEP1 5'UTR 0.21 TCGA-A2-A25D-01 14 23858706 23858706 G A MYH6 Nonsense_Mutation p.Q1292* 0.22 TCGA-A2-A25D-01 14 75483774 75483774 T A MLH3 3'UTR 0.31 TCGA-A2-A25D-01 14 94524189 94524189 G T DDX24 Silent p.V656V 0.25 TCGA-A2-A25D-01 15 42743987 42743987 G A ZNF106 Silent p.G138G 0.13 TCGA-A2-A25D-01 16 30393472 30393472 G C SEPT1 Silent p.L46L 0.38 TCGA-A2-A25D-01 16 4835875 4835875 C T SEPT12 Missense_Mutation p.G103S 0.23 deleterious(0.01) possibly_damaging(0.841) TCGA-A2-A25D-01 17 34105965 34105965 C A MMP28 Missense_Mutation p.W102C 0.17 deleterious(0) probably_damaging(0.996) TCGA-A2-A25D-01 17 73924235 73924235 T C FBF1 Missense_Mutation p.K93E 0.22 deleterious(0) possibly_damaging(0.479) TCGA-A2-A25D-01 17 77705092 77705092 C A ENPP7 Missense_Mutation p.A64E 0.16 deleterious(0) probably_damaging(1) TCGA-A2-A25D-01 18 10487617 10487617 C A APCDD1 Missense_Mutation p.A376E 0.29 tolerated(1) benign(0.232) TCGA-A2-A25D-01 18 10761023 10761023 C T PIEZO2 Silent p.T1087T 0.30 TCGA-A2-A25D-01 18 29480941 29480941 T C TRAPPC8 Silent p.P479P 0.37 TCGA-A2-A25D-01 18 55362549 55362549 C A ATP8B1 Missense_Mutation p.C265F 0.06 deleterious(0) probably_damaging(0.996) TCGA-A2-A25D-01 18 7040150 7040150 C T LAMA1 Silent p.P449P 0.06 TCGA-A2-A25D-01 18 7042194 7042194 G A LAMA1 Missense_Mutation p.S404F 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-A2-A25D-01 19 11470279 11470279 C T DKFZP761J1410 Intron 0.29 TCGA-A2-A25D-01 19 22154320 22154320 T G ZNF208 Missense_Mutation p.E1172D 0.18 tolerated(0.45) benign(0.271) TCGA-A2-A25D-01 19 40581727 40581727 A C ZNF780A Missense_Mutation p.F209V 0.25 deleterious(0.05) benign(0.078) TCGA-A2-A25D-01 19 49519114 49519114 C G RUVBL2 3'UTR 0.12 TCGA-A2-A25D-01 19 9060763 9060763 T G MUC16 Missense_Mutation p.T8895P 0.42 unknown(0) TCGA-A2-A25D-01 1 117131545 117131545 G A IGSF3 Silent p.S757S 0.31 TCGA-A2-A25D-01 1 12979774 12979774 G A PRAMEF7 Silent p.K322K 0.08 TCGA-A2-A25D-01 1 159175653 159175653 G T DARC Missense_Mutation p.A144S 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-A2-A25D-01 1 19518987 19518987 C A UBR4 Silent p.R397R 0.55 TCGA-A2-A25D-01 1 225609856 225609856 A C LBR Missense_Mutation p.S97A 0.12 tolerated(0.17) benign(0.079) TCGA-A2-A25D-01 1 22965464 22965464 G A C1QA Missense_Mutation p.G101D 0.37 deleterious(0) probably_damaging(1) TCGA-A2-A25D-01 1 24972547 24972547 G A SRRM1 Missense_Mutation p.E32K 0.20 possibly_damaging(0.842) TCGA-A2-A25D-01 20 23345750 23345750 C A GZF1 Missense_Mutation p.L244I 0.29 tolerated(0.12) possibly_damaging(0.619) TCGA-A2-A25D-01 20 36841476 36841476 A G KIAA1755 Missense_Mutation p.S1191P 0.29 deleterious(0) probably_damaging(0.959) TCGA-A2-A25D-01 20 43851070 43851070 A T SEMG2 Missense_Mutation p.N266I 0.35 deleterious(0) probably_damaging(0.998) TCGA-A2-A25D-01 2 180858042 180858042 T G CWC22 Missense_Mutation p.K9N 0.27 tolerated_low_confidence(0.54) benign(0.004) TCGA-A2-A25D-01 2 209025629 209025629 G A CRYGA Missense_Mutation p.R142W 0.14 deleterious(0.04) benign(0.27) TCGA-A2-A25D-01 2 238277616 238277616 G A COL6A3 Missense_Mutation p.A1497V 0.30 benign(0.159) TCGA-A2-A25D-01 2 26534618 26534618 G A GPR113 Nonsense_Mutation p.R660* 0.24 TCGA-A2-A25D-01 2 27551716 27551716 C T GTF3C2 Missense_Mutation p.V708I 0.33 tolerated(0.08) benign(0.255) TCGA-A2-A25D-01 2 33585833 33585833 G T LTBP1 Silent p.P1390P 0.32 TCGA-A2-A25D-01 2 68882542 68882542 C T PROKR1 Missense_Mutation p.T339I 0.25 deleterious(0) probably_damaging(0.994) TCGA-A2-A25D-01 2 73635817 73635817 C G ALMS1 Missense_Mutation p.S131C 0.30 probably_damaging(0.965) TCGA-A2-A25D-01 3 142234359 142234359 T C ATR Splice_Site p.X1461_splice 0.21 TCGA-A2-A25D-01 3 171406629 171406629 T C PLD1 Missense_Mutation p.Y459C 0.21 deleterious(0) probably_damaging(1) TCGA-A2-A25D-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.42 TCGA-A2-A25D-01 3 97852403 97852403 A G OR5H1 Missense_Mutation p.I288V 0.30 tolerated(0.06) benign(0.005) TCGA-A2-A25D-01 4 156724917 156724917 G A GUCY1B3 Splice_Site p.X518_splice 0.21 TCGA-A2-A25D-01 4 47560135 47560135 G C ATP10D Missense_Mutation p.G760A 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-A2-A25D-01 5 13810208 13810208 C T DNAH5 Silent p.G2523G 0.29 TCGA-A2-A25D-01 5 139193009 139193009 G A PSD2 Missense_Mutation p.G163R 0.20 deleterious_low_confidence(0.01) benign(0.108) TCGA-A2-A25D-01 5 139574060 139574060 G C CYSTM1 Missense_Mutation p.E4Q 0.37 tolerated_low_confidence(0.22) unknown(0) TCGA-A2-A25D-01 5 140255068 140255068 T C PCDHA12 Missense_Mutation p.I4T 0.18 tolerated_low_confidence(0.4) benign(0.002) TCGA-A2-A25D-01 5 172750382 172750382 G T STC2 Missense_Mutation p.H116N 0.38 tolerated(0.08) possibly_damaging(0.61) TCGA-A2-A25D-01 5 35072754 35072754 G - PRLR Frame_Shift_Del p.L156* 0.25 TCGA-A2-A25D-01 6 33679361 33679361 C A UQCC2 Missense_Mutation p.V35L 0.15 deleterious(0.03) benign(0.43) TCGA-A2-A25D-01 6 47846156 47846156 C T PTCHD4 Silent p.T808T 0.23 TCGA-A2-A25D-01 6 53133926 53133926 C T ELOVL5 Silent p.%3D 0.26 TCGA-A2-A25D-01 8 110471843 110471844 - A PKHD1L1 Frame_Shift_Ins p.M2344Nfs*9 0.19 TCGA-A2-A25D-01 8 67509563 67509563 A T MYBL1 Splice_Site p.X171_splice 0.16 TCGA-A2-A25D-01 9 136324188 136324189 - A ADAMTS13 Frame_Shift_Ins p.S1391Kfs*54 0.52 TCGA-A2-A25D-01 9 15571654 15571654 T - CCDC171 Frame_Shift_Del p.I25Nfs*26 0.17 TCGA-A2-A25D-01 9 32459494 32459494 G A DDX58 Missense_Mutation p.H786Y 0.38 deleterious(0.01) benign(0.071) TCGA-A2-A25E-01 10 101458349 101458349 C T ENTPD7 Missense_Mutation p.P357S 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-A2-A25E-01 10 7773943 7773943 T C ITIH2 Missense_Mutation p.V544A 0.36 tolerated(0.6) benign(0.04) TCGA-A2-A25E-01 10 95372472 95372472 C G PDE6C 5'UTR 0.36 TCGA-A2-A25E-01 11 118344575 118344577 AGT TAAAACA KMT2A Nonsense_Mutation p.S901* 0.55 TCGA-A2-A25E-01 11 18723330 18723330 G C TMEM86A Missense_Mutation p.R166P 0.37 deleterious(0.01) possibly_damaging(0.613) TCGA-A2-A25E-01 11 43411360 43411360 C T TTC17 Silent p.S136S 0.41 TCGA-A2-A25E-01 11 62652118 62652118 C T SLC3A2 Silent p.F360F 0.31 TCGA-A2-A25E-01 12 102117039 102117039 A C CHPT1 Missense_Mutation p.K292Q 0.33 tolerated(0.23) benign(0.014) TCGA-A2-A25E-01 12 108920132 108920132 G A SART3 Missense_Mutation p.T705I 0.59 deleterious(0) possibly_damaging(0.811) TCGA-A2-A25E-01 12 119966483 119966483 G A CCDC60 Silent p.K431K 0.26 TCGA-A2-A25E-01 12 122292695 122292695 C T HPD Missense_Mutation p.A110T 0.48 tolerated(0.24) benign(0.387) TCGA-A2-A25E-01 12 1517405 1517405 C G ERC1 Missense_Mutation p.P1006A 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A2-A25E-01 13 28134091 28134091 G T LNX2 Missense_Mutation p.A419D 0.35 tolerated(0.24) benign(0.297) TCGA-A2-A25E-01 14 76246009 76246011 AAC - TTLL5 In_Frame_Del p.N830del 0.51 TCGA-A2-A25E-01 16 31384615 31384615 A G ITGAX Silent p.E804E 0.30 TCGA-A2-A25E-01 17 19699025 19699025 C T ULK2 Missense_Mutation p.G671R 0.26 deleterious(0.01) probably_damaging(1) TCGA-A2-A25E-01 17 67190107 67190107 G A ABCA10 Nonsense_Mutation p.Q457* 0.28 TCGA-A2-A25E-01 17 6917541 6917541 T C AC040977.1 Missense_Mutation p.E72G 0.39 tolerated_low_confidence(0.08) possibly_damaging(0.864) TCGA-A2-A25E-01 17 74470176 74470176 T C RHBDF2 Missense_Mutation p.M534V 0.33 tolerated(0.24) benign(0.002) TCGA-A2-A25E-01 18 18586456 18586456 G C ROCK1 Missense_Mutation p.L581V 0.35 tolerated(0.29) benign(0.003) TCGA-A2-A25E-01 18 56033334 56033334 C A NEDD4L Missense_Mutation p.A646D 0.09 deleterious(0) probably_damaging(1) TCGA-A2-A25E-01 19 40520249 40520249 G A ZNF546 Missense_Mutation p.E358K 0.33 tolerated(0.21) possibly_damaging(0.621) TCGA-A2-A25E-01 19 42744148 42744148 G C AC006486.9 Missense_Mutation p.L57V 0.30 tolerated(0.37) benign(0) TCGA-A2-A25E-01 1 113456731 113456731 C T SLC16A1 Missense_Mutation p.V429I 0.48 tolerated(1) benign(0.006) TCGA-A2-A25E-01 1 160134150 160134150 C G ATP1A4 Missense_Mutation p.A328G 0.22 deleterious(0.02) possibly_damaging(0.479) TCGA-A2-A25E-01 1 173157660 173157660 C T TNFSF4 Missense_Mutation p.E68K 0.23 tolerated(0.97) benign(0.001) TCGA-A2-A25E-01 1 226426761 226426761 G T LIN9 Silent p.R402R 0.46 TCGA-A2-A25E-01 1 235891402 235891402 T C LYST Missense_Mutation p.N3046D 0.27 tolerated(0.14) probably_damaging(0.986) TCGA-A2-A25E-01 1 26582252 26582252 T G CEP85 Missense_Mutation p.W267G 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A25E-01 1 27682955 27682955 G C MAP3K6 Nonsense_Mutation p.Y1187* 0.44 TCGA-A2-A25E-01 1 45470581 45470581 A T HECTD3 Intron 0.42 TCGA-A2-A25E-01 1 55473913 55473913 C T BSND Missense_Mutation p.A192V 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-A2-A25E-01 1 62905637 62905637 T G USP1 Silent p.T33T 0.39 TCGA-A2-A25E-01 1 76251921 76251921 A G RABGGTB 5'UTR 0.33 TCGA-A2-A25E-01 20 1435746 1435746 G C NSFL1C Missense_Mutation p.Q106E 0.21 tolerated(0.42) probably_damaging(0.99) TCGA-A2-A25E-01 20 57415742 57415742 T A RP4-806M20.3 5'Flank 0.27 TCGA-A2-A25E-01 22 37709683 37709683 G C CYTH4 3'UTR 0.53 TCGA-A2-A25E-01 2 121685040 121685040 C G GLI2 Missense_Mutation p.H84Q 0.42 deleterious(0.01) possibly_damaging(0.675) TCGA-A2-A25E-01 2 128526530 128526530 G A WDR33 Missense_Mutation p.P84S 0.39 deleterious(0.01) unknown(0) TCGA-A2-A25E-01 2 71012744 71012744 T C FIGLA Missense_Mutation p.S138G 0.20 tolerated(0.19) benign(0.006) TCGA-A2-A25E-01 3 185165736 185165736 G A MAP3K13 Splice_Site p.X337_splice 0.27 TCGA-A2-A25E-01 4 155719029 155719029 A T RBM46 Missense_Mutation p.Y73F 0.28 tolerated(0.82) benign(0.385) TCGA-A2-A25E-01 4 69973931 69973931 G C UGT2B7 Missense_Mutation p.D401H 0.36 deleterious(0.02) benign(0.014) TCGA-A2-A25E-01 4 843413 843413 C T GAK 3'UTR 0.47 TCGA-A2-A25E-01 5 75970488 75970488 C T IQGAP2 Missense_Mutation p.L1161F 0.48 deleterious(0) probably_damaging(0.911) TCGA-A2-A25E-01 6 129927045 129927045 C G ARHGAP18 Missense_Mutation p.D448H 0.44 deleterious(0) benign(0.072) TCGA-A2-A25E-01 6 16326909 16326909 G T ATXN1 Missense_Mutation p.P545T 0.32 tolerated(0.13) benign(0.159) TCGA-A2-A25E-01 6 24559272 24559272 C G KIAA0319 Missense_Mutation p.L901F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A25E-01 6 26184397 26184397 C TGGA HIST1H2BE In_Frame_Ins p.S125delinsLD 0.42 TCGA-A2-A25E-01 6 27776320 27776320 C A HIST1H2AI Missense_Mutation p.N111K 0.33 deleterious_low_confidence(0.04) benign(0.029) TCGA-A2-A25E-01 6 46851971 46851971 G A GPR116 Silent p.C122C 0.24 TCGA-A2-A25E-01 7 100842014 100842014 G C MOGAT3 Missense_Mutation p.T129S 0.42 deleterious(0.02) possibly_damaging(0.856) TCGA-A2-A25E-01 7 3990598 3990598 T C SDK1 Silent p.V297V 0.37 TCGA-A2-A25E-01 7 72658429 72658429 G A GTF2IRD2P1 RNA 0.32 TCGA-A2-A25E-01 7 72667580 72667580 G A GTF2IRD2P1 RNA 0.20 TCGA-A2-A25E-01 8 146157623 146157623 C T ZNF16 Missense_Mutation p.D184N 0.17 tolerated(1) benign(0.001) TCGA-A2-A25E-01 9 123789552 123789552 T A C5 Missense_Mutation p.R253S 0.34 tolerated(0.5) benign(0.088) TCGA-A2-A25E-01 9 127218946 127218946 G A GPR144 Missense_Mutation p.A499T 0.23 deleterious(0.01) probably_damaging(0.956) TCGA-A2-A25E-01 9 41962541 41962541 T C RP11-204M4.2 RNA 0.26 TCGA-A2-A25E-01 9 87563383 87563383 A T NTRK2 Nonsense_Mutation p.K591* 0.19 TCGA-A2-A25E-01 X 10102560 10102560 C G WWC3 Missense_Mutation p.S896W 0.57 deleterious(0) probably_damaging(0.988) TCGA-A2-A25E-01 X 18942252 18942252 G T PHKA2 Missense_Mutation p.T572K 0.22 tolerated(0.52) benign(0.063) TCGA-A2-A25E-01 X 69263413 69263413 C A AWAT2 Missense_Mutation p.K129N 0.40 deleterious(0.01) possibly_damaging(0.886) TCGA-A2-A25E-01 X 70281704 70281722 CTGCTCGAGGCCCTGCCTC - SNX12 Frame_Shift_Del p.R119Sfs*53 0.39 TCGA-A2-A25E-01 X 79999555 79999555 A G BRWD3 Silent p.H263H 0.38 TCGA-A2-A25F-01 14 21861871 21861871 T A CHD8 Missense_Mutation p.H2028L 0.07 tolerated_low_confidence(0.29) benign(0) TCGA-A2-A25F-01 19 51452257 51452257 G A KLK5 Silent p.H150H 0.11 TCGA-A2-A25F-01 1 156307997 156307997 G A CCT3 5'UTR 0.10 TCGA-A2-A25F-01 4 25806243 25806243 A T SEL1L3 Missense_Mutation p.C566S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A25F-01 6 39284217 39284217 G T KCNK16 Intron 0.10 TCGA-A2-A25F-01 8 39080751 39080751 G T ADAM32 Nonsense_Mutation p.G507* 0.11 TCGA-A2-A3KD-01 11 6424398 6424398 G A APBB1 Missense_Mutation p.R361W 0.09 tolerated(0.18) benign(0.409) TCGA-A2-A3KD-01 14 106053932 106053932 G A IGHA2 Missense_Mutation p.P196L 0.13 deleterious(0.04) benign(0.088) TCGA-A2-A3KD-01 14 69920016 69920016 C T SLC39A9 Silent p.V154V 0.41 TCGA-A2-A3KD-01 14 74988688 74988688 C T LTBP2 Missense_Mutation p.R905H 0.08 tolerated(0.15) benign(0.007) TCGA-A2-A3KD-01 18 14852311 14852311 G A ANKRD30B Silent p.E1337E 0.14 TCGA-A2-A3KD-01 1 158724608 158724608 G A OR6K6 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.04) benign(0) TCGA-A2-A3KD-01 20 34171140 34171140 T C FER1L4 RNA 0.13 TCGA-A2-A3KD-01 22 26868810 26868810 G A HPS4 Silent p.S124S 0.23 TCGA-A2-A3KD-01 22 38615483 38615483 A T TMEM184B 3'UTR 0.34 TCGA-A2-A3KD-01 2 26149998 26149998 T C KIF3C 3'UTR 0.25 TCGA-A2-A3KD-01 3 170201151 170201151 G A SLC7A14 Missense_Mutation p.P356L 0.24 deleterious(0) probably_damaging(1) TCGA-A2-A3KD-01 3 185879390 185879390 A G DGKG Splice_Site p.X759_splice 0.27 TCGA-A2-A3KD-01 3 8609232 8609232 T C LMCD1 Missense_Mutation p.V349A 0.24 deleterious(0.01) benign(0.111) TCGA-A2-A3KD-01 5 169535084 169535084 C T FOXI1 Silent p.N202N 0.40 TCGA-A2-A3KD-01 6 17293697 17293697 C T RBM24 3'UTR 0.21 TCGA-A2-A3KD-01 X 152613219 152613219 G A ZNF275 Silent p.P326P 0.25 TCGA-A2-A3KD-01 X 24231691 24231691 A G ZFX 3'UTR 0.28 TCGA-A2-A3KD-01 X 70837002 70837002 G A CXCR3 Missense_Mutation p.P154L 0.34 deleterious(0) probably_damaging(1) TCGA-A2-A3XT-01 10 102055882 102055882 G C PKD2L1 Missense_Mutation p.I451M 0.27 deleterious(0.01) probably_damaging(1) TCGA-A2-A3XT-01 10 104809536 104809536 G A CNNM2 Missense_Mutation p.G565E 0.17 deleterious(0) probably_damaging(0.955) TCGA-A2-A3XT-01 10 28872359 28872359 C G WAC Missense_Mutation p.H102Q 0.24 tolerated(0.13) probably_damaging(0.986) TCGA-A2-A3XT-01 10 73556871 73556871 G C CDH23 Translation_Start_Site p.M1? 0.42 tolerated_low_confidence(0.24) benign(0.002) TCGA-A2-A3XT-01 10 93809591 93809591 T C CPEB3 3'UTR 0.26 TCGA-A2-A3XT-01 11 124294625 124294625 A G OR8B4 Missense_Mutation p.L48S 0.21 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-A2-A3XT-01 11 46775039 46775039 C G CKAP5 Missense_Mutation p.Q1626H 0.16 tolerated(0.07) probably_damaging(0.91) TCGA-A2-A3XT-01 11 47237948 47237948 G A DDB2 Silent p.L63L 0.29 TCGA-A2-A3XT-01 11 6867817 6867817 C T OR10A5 Missense_Mutation p.L302F 0.42 tolerated(0.2) benign(0.063) TCGA-A2-A3XT-01 11 77728118 77728118 G C KCTD14 Missense_Mutation p.Q97E 0.27 tolerated(0.27) benign(0.261) TCGA-A2-A3XT-01 12 101748661 101748661 G C UTP20 Missense_Mutation p.R1720P 0.24 tolerated(0.33) benign(0) TCGA-A2-A3XT-01 14 22386766 22386766 G T TRAV13-2 Nonsense_Mutation p.E59* 0.26 TCGA-A2-A3XT-01 14 37739693 37739693 G C MIPOL1 Missense_Mutation p.E152D 0.16 tolerated(0.08) probably_damaging(0.961) TCGA-A2-A3XT-01 14 65878620 65878620 C A FUT8 5'UTR 0.17 TCGA-A2-A3XT-01 15 22369004 22369004 C A OR4M2 Silent p.I143I 0.11 TCGA-A2-A3XT-01 15 22473163 22473163 G A IGHV4OR15-8 Silent p.T36T 0.04 TCGA-A2-A3XT-01 15 40491905 40491905 C G BUB1B Missense_Mutation p.Q460E 0.24 tolerated(0.25) benign(0.1) TCGA-A2-A3XT-01 15 40498656 40498656 T C BUB1B Missense_Mutation p.L669P 0.31 deleterious(0) probably_damaging(0.98) TCGA-A2-A3XT-01 15 43622236 43622236 T C LCMT2 Missense_Mutation p.E151G 0.35 tolerated(0.09) benign(0.309) TCGA-A2-A3XT-01 15 64200774 64200774 T C DAPK2 Missense_Mutation p.E353G 0.21 deleterious(0) benign(0.15) TCGA-A2-A3XT-01 15 93161477 93161477 C T FAM174B 3'UTR 0.38 TCGA-A2-A3XT-01 16 1370586 1370586 C T UBE2I Intron 0.48 TCGA-A2-A3XT-01 17 34072743 34072743 G A GAS2L2 Silent p.P591P 0.40 TCGA-A2-A3XT-01 17 46057970 46057970 C A CDK5RAP3 Missense_Mutation p.F363L 0.29 deleterious(0.03) possibly_damaging(0.766) TCGA-A2-A3XT-01 17 60690811 60690811 G A TLK2 3'UTR 0.24 TCGA-A2-A3XT-01 17 7482194 7482194 C G EIF4A1 3'UTR 0.34 TCGA-A2-A3XT-01 17 7578527 7578527 A G TP53 Missense_Mutation p.C135R 0.37 deleterious(0) probably_damaging(1) TCGA-A2-A3XT-01 17 80321381 80321381 T C TEX19 3'UTR 0.39 TCGA-A2-A3XT-01 19 19313894 19313894 G A NR2C2AP 5'UTR 0.12 TCGA-A2-A3XT-01 19 38103256 38103256 G C ZNF540 Missense_Mutation p.E359Q 0.11 tolerated(0.06) probably_damaging(0.923) TCGA-A2-A3XT-01 19 55995757 55995757 C A ZNF628 3'UTR 0.37 TCGA-A2-A3XT-01 19 8027694 8027694 C A ELAVL1 3'UTR 0.27 TCGA-A2-A3XT-01 1 118584483 118584483 C G SPAG17 Missense_Mutation p.K999N 0.31 deleterious(0.01) possibly_damaging(0.518) TCGA-A2-A3XT-01 1 153617980 153617980 A G CHTOP 3'UTR 0.65 TCGA-A2-A3XT-01 1 154192932 154192932 G C C1orf43 5'UTR 0.23 TCGA-A2-A3XT-01 1 155025011 155025011 A G ADAM15 Intron 0.14 TCGA-A2-A3XT-01 1 156146717 156146717 C G SEMA4A Missense_Mutation p.P739A 0.38 tolerated(0.19) benign(0.03) TCGA-A2-A3XT-01 1 15844722 15844722 G C CASP9 Missense_Mutation p.P101A 0.24 tolerated(0.16) benign(0.005) TCGA-A2-A3XT-01 1 186322968 186322968 T A TPR Missense_Mutation p.Q729L 0.13 benign(0.069) TCGA-A2-A3XT-01 1 18691740 18691740 A G IGSF21 Silent p.E188E 0.26 TCGA-A2-A3XT-01 1 197126629 197126629 G A ZBTB41 3'UTR 0.19 TCGA-A2-A3XT-01 1 207110625 207110625 C T PIGR Missense_Mutation p.G287E 0.22 deleterious(0.02) possibly_damaging(0.899) TCGA-A2-A3XT-01 1 225393683 225393683 G A DNAH14 Nonsense_Mutation p.W1569* 0.07 TCGA-A2-A3XT-01 1 39950403 39950403 G A MACF1 Splice_Site p.X5346_splice 0.16 TCGA-A2-A3XT-01 1 43889967 43889967 G A SZT2 Missense_Mutation p.G779S 0.52 tolerated(0.62) possibly_damaging(0.472) TCGA-A2-A3XT-01 1 45809422 45809422 C G TOE1 3'UTR 0.25 TCGA-A2-A3XT-01 1 6695273 6695273 G A DNAJC11 3'UTR 0.16 TCGA-A2-A3XT-01 1 90179573 90179573 C T LRRC8C Missense_Mutation p.H482Y 0.21 deleterious(0) benign(0.25) TCGA-A2-A3XT-01 1 92945969 92945969 T G GFI1 Missense_Mutation p.E287A 0.24 tolerated(0.14) possibly_damaging(0.688) TCGA-A2-A3XT-01 20 10621851 10621851 C G JAG1 Missense_Mutation p.L986F 0.14 tolerated(0.06) possibly_damaging(0.743) TCGA-A2-A3XT-01 20 18548129 18548129 C G LINC00493 RNA 0.12 TCGA-A2-A3XT-01 20 32357924 32357936 CGTTCCCAAAGCT - ZNF341 Frame_Shift_Del p.F477Tfs*14 0.22 TCGA-A2-A3XT-01 20 39808879 39808879 C G ZHX3 3'UTR 0.06 TCGA-A2-A3XT-01 20 58322830 58322830 G C PHACTR3 Missense_Mutation p.A100P 0.42 deleterious(0.03) possibly_damaging(0.488) TCGA-A2-A3XT-01 20 61537199 61537199 C T DIDO1 Intron 0.30 TCGA-A2-A3XT-01 21 16337149 16337149 C G NRIP1 Missense_Mutation p.R1122T 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A3XT-01 22 24656983 24656983 C G POM121L9P RNA 0.10 TCGA-A2-A3XT-01 22 37425640 37425641 - AAGTT MPST 3'UTR 0.33 TCGA-A2-A3XT-01 22 42456267 42456267 C G NAGA 3'UTR 0.23 TCGA-A2-A3XT-01 22 42607383 42607383 G C TCF20 Missense_Mutation p.S1310C 0.13 possibly_damaging(0.541) TCGA-A2-A3XT-01 22 45736628 45736628 G C FAM118A 3'UTR 0.09 TCGA-A2-A3XT-01 2 1637680 1637680 A T PXDN 3'UTR 0.16 TCGA-A2-A3XT-01 2 16743410 16743410 C G FAM49A Splice_Site p.X100_splice 0.09 TCGA-A2-A3XT-01 2 179428450 179428450 G T TTN Missense_Mutation p.P27470Q 0.18 TCGA-A2-A3XT-01 2 179560939 179560939 G T TTN Missense_Mutation p.T10287N 0.21 TCGA-A2-A3XT-01 2 179659960 179659960 T C TTN Missense_Mutation p.R312G 0.18 TCGA-A2-A3XT-01 2 212288987 212288987 G C ERBB4 Missense_Mutation p.P920R 0.13 deleterious(0) probably_damaging(1) TCGA-A2-A3XT-01 2 234204052 234204052 C G ATG16L1 3'UTR 0.16 TCGA-A2-A3XT-01 2 25354666 25354666 C T EFR3B Missense_Mutation p.L345F 0.14 tolerated(0.36) possibly_damaging(0.718) TCGA-A2-A3XT-01 2 29295688 29295688 A G C2orf71 Silent p.S480S 0.15 TCGA-A2-A3XT-01 2 61024677 61024677 C G PAPOLG 3'UTR 0.17 TCGA-A2-A3XT-01 2 74332754 74332754 C T TET3 3'UTR 0.32 TCGA-A2-A3XT-01 2 86422584 86422584 G T IMMT 5'UTR 0.31 TCGA-A2-A3XT-01 2 86422585 86422585 T A IMMT 5'UTR 0.31 TCGA-A2-A3XT-01 3 195515356 195515356 G C MUC4 Nonsense_Mutation p.S1032* 0.07 TCGA-A2-A3XT-01 3 195711501 195711501 G C SDHAP1 RNA 0.12 TCGA-A2-A3XT-01 3 53787671 53787671 G A CACNA1D Missense_Mutation p.V1270I 0.09 tolerated(0.23) probably_damaging(0.994) TCGA-A2-A3XT-01 3 70015353 70015353 C G MITF 3'UTR 0.15 TCGA-A2-A3XT-01 3 9807906 9807906 G C OGG1 3'UTR 0.24 TCGA-A2-A3XT-01 3 9991723 9991723 A G PRRT3 Missense_Mutation p.L26P 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-A2-A3XT-01 4 153271249 153271249 C G FBXW7 Missense_Mutation p.E177Q 0.31 deleterious_low_confidence(0.01) benign(0.374) TCGA-A2-A3XT-01 4 39104910 39104910 C A KLHL5 Missense_Mutation p.A481E 0.29 deleterious(0.01) probably_damaging(0.955) TCGA-A2-A3XT-01 4 46125919 46125919 C G GABRG1 Missense_Mutation p.L4F 0.43 tolerated_low_confidence(0.21) benign(0.003) TCGA-A2-A3XT-01 5 115823874 115823874 G T SEMA6A Missense_Mutation p.A225D 0.42 deleterious(0) probably_damaging(1) TCGA-A2-A3XT-01 5 134782577 134782577 T C C5orf20 Silent p.K74K 0.45 TCGA-A2-A3XT-01 5 140615248 140615248 C T PCDHB18 RNA 0.46 TCGA-A2-A3XT-01 5 176491979 176491979 G A ZNF346 3'UTR 0.44 TCGA-A2-A3XT-01 6 108279120 108279120 A G SEC63 Missense_Mutation p.Y32H 0.33 deleterious(0) probably_damaging(0.928) TCGA-A2-A3XT-01 6 109931716 109931716 G T AK9 Missense_Mutation p.A565D 0.34 tolerated(0.63) benign(0.001) TCGA-A2-A3XT-01 6 143382177 143382177 T A AIG1 Missense_Mutation p.W39R 0.42 deleterious(0) probably_damaging(0.999) TCGA-A2-A3XT-01 6 143999231 143999231 G A PHACTR2 5'UTR 0.41 TCGA-A2-A3XT-01 6 150326280 150326288 GCGGCCGCT - RAET1K RNA 0.51 TCGA-A2-A3XT-01 6 26598278 26598278 C A ABT1 Missense_Mutation p.H126Q 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-A2-A3XT-01 6 30153878 30153878 G C TRIM26 Silent p.L465L 0.28 TCGA-A2-A3XT-01 6 32975108 32975108 G C HLA-DOA Missense_Mutation p.A198G 0.35 tolerated(0.1) benign(0.003) TCGA-A2-A3XT-01 6 35050934 35050934 T C ANKS1A Silent p.Y946Y 0.30 TCGA-A2-A3XT-01 6 37604942 37604942 C A MDGA1 3'UTR 0.09 TCGA-A2-A3XT-01 6 45870196 45870196 G A CLIC5 3'UTR 0.12 TCGA-A2-A3XT-01 6 56965700 56965700 G C ZNF451 Intron 0.33 TCGA-A2-A3XT-01 6 57054942 57054942 A G RAB23 3'UTR 0.71 TCGA-A2-A3XT-01 7 100161568 100161568 T G AGFG2 Missense_Mutation p.L428R 0.36 tolerated(0.06) benign(0.342) TCGA-A2-A3XT-01 7 1133354 1133354 C G GPER1 3'UTR 0.37 TCGA-A2-A3XT-01 7 23300074 23300074 G T GPNMB Splice_Site p.X234_splice 0.26 TCGA-A2-A3XT-01 7 36450289 36450289 C G ANLN Silent p.T421T 0.27 TCGA-A2-A3XT-01 7 99110156 99110156 G A ZKSCAN5 Silent p.L165L 0.27 TCGA-A2-A3XT-01 8 101534755 101534782 TTAATTGCCTCATCTTCCATGAGCTCCT - ANKRD46 Intron 0.14 TCGA-A2-A3XT-01 8 133107850 133107850 C G HHLA1 Splice_Site p.X158_splice 0.32 TCGA-A2-A3XT-01 8 25286040 25286040 T C KCTD9 3'UTR 0.22 TCGA-A2-A3XT-01 8 38644993 38644993 G C TACC1 5'UTR 0.09 TCGA-A2-A3XT-01 8 68397009 68397009 T C CPA6 Missense_Mutation p.K218E 0.11 tolerated(0.11) benign(0.142) TCGA-A2-A3XT-01 8 77618708 77618708 G A ZFHX4 Missense_Mutation p.M795I 0.10 benign(0.043) TCGA-A2-A3XT-01 9 138714985 138714985 T C CAMSAP1 Missense_Mutation p.I508V 0.31 tolerated(0.67) benign(0.007) TCGA-A2-A3XT-01 9 139405185 139405185 G A NOTCH1 Missense_Mutation p.T887I 0.42 deleterious(0.04) possibly_damaging(0.772) TCGA-A2-A3XT-01 9 14819423 14819423 C G FREM1 Silent p.L785L 0.20 TCGA-A2-A3XT-01 9 20789449 20789449 G C FOCAD Missense_Mutation p.D433H 0.07 tolerated(0.26) benign(0.011) TCGA-A2-A3XT-01 9 97062216 97062216 G A ZNF169 Missense_Mutation p.G126R 0.21 tolerated(0.46) benign(0.096) TCGA-A2-A3XT-01 X 104512185 104512185 G C IL1RAPL2 Missense_Mutation p.G220R 0.39 deleterious(0.02) benign(0.188) TCGA-A2-A3XT-01 X 114425148 114425148 C T RBMXL3 Missense_Mutation p.R382C 0.21 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-A2-A3XT-01 X 12735822 12735822 C T FRMPD4 Silent p.P959P 0.34 TCGA-A2-A3XT-01 X 135405034 135405034 A T GPR112 Silent p.T56T 0.27 TCGA-A2-A3XT-01 X 153581202 153581202 T G FLNA Missense_Mutation p.Y2106S 0.50 deleterious(0) probably_damaging(0.971) TCGA-A2-A3XT-01 X 154033610 154033610 G T MPP1 Missense_Mutation p.S13R 0.29 deleterious_low_confidence(0) benign(0.241) TCGA-A2-A3XT-01 X 154292302 154292302 C G CMC4 5'UTR 0.13 TCGA-A2-A3XT-01 X 41025221 41025227 TGAAGCC - USP9X Frame_Shift_Del p.E695Vfs*8 0.18 TCGA-A2-A3XT-01 X 53575991 53575991 C T HUWE1 Missense_Mutation p.V3322I 0.19 benign(0.103) TCGA-A2-A3XT-01 X 96200577 96200577 A G DIAPH2 Missense_Mutation p.E499G 0.18 deleterious(0) unknown(0) TCGA-A2-A3XT-01 X 9661204 9661204 T C TBL1X Silent p.L303L 0.34 TCGA-A2-A3XU-01 11 125454349 125454349 C G EI24 3'UTR 0.33 TCGA-A2-A3XU-01 11 1705462 1705462 G A AP006285.6 5'Flank 0.33 TCGA-A2-A3XU-01 11 17424297 17424297 G T ABCC8 Missense_Mutation p.D1187E 0.46 tolerated(0.63) benign(0.19) TCGA-A2-A3XU-01 11 93461948 93461952 AGAAG - KIAA1731 Frame_Shift_Del p.K2424Rfs*3 0.34 TCGA-A2-A3XU-01 12 110290498 110290498 C T GLTP Silent p.A164A 0.14 TCGA-A2-A3XU-01 12 113734983 113734983 A G TPCN1 3'UTR 0.17 TCGA-A2-A3XU-01 12 46582422 46582422 T A SLC38A1 3'UTR 0.24 TCGA-A2-A3XU-01 13 31034821 31034821 A G HMGB1 3'UTR 0.19 TCGA-A2-A3XU-01 14 50101796 50101796 G T DNAAF2 Silent p.T24T 0.24 TCGA-A2-A3XU-01 14 69256924 69256925 - GC ZFP36L1 Frame_Shift_Ins p.Y115Afs*34 0.56 TCGA-A2-A3XU-01 17 18220650 18220650 G C SMCR8 Missense_Mutation p.S516T 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-A2-A3XU-01 17 45789197 45789197 C T TBKBP1 3'UTR 0.46 TCGA-A2-A3XU-01 17 79534473 79534473 G T NPLOC4 Missense_Mutation p.F512L 0.37 deleterious(0.03) possibly_damaging(0.844) TCGA-A2-A3XU-01 17 8219172 8219172 T C ARHGEF15 Silent p.Y507Y 0.46 TCGA-A2-A3XU-01 19 6755277 6755277 C T SH2D3A Silent p.P182P 0.44 TCGA-A2-A3XU-01 1 161087854 161087855 - C PFDN2 5'UTR 0.26 TCGA-A2-A3XU-01 1 223568468 223568468 G T C1orf65 Nonsense_Mutation p.E551* 0.17 TCGA-A2-A3XU-01 1 226549141 226549141 G A PARP1 3'UTR 0.61 TCGA-A2-A3XU-01 1 248845530 248845530 C T OR14I1 Missense_Mutation p.A26T 0.22 tolerated(0.39) benign(0.063) TCGA-A2-A3XU-01 22 21800989 21800989 G C HIC2 Missense_Mutation p.R602P 0.12 deleterious(0) possibly_damaging(0.859) TCGA-A2-A3XU-01 2 109116175 109116175 C T GCC2 Missense_Mutation p.P1650L 0.13 deleterious(0) probably_damaging(0.999) TCGA-A2-A3XU-01 2 27280266 27280266 C T AGBL5 Missense_Mutation p.P544L 0.42 tolerated(0.09) benign(0.121) TCGA-A2-A3XU-01 3 45988437 45988437 T C CXCR6 Missense_Mutation p.I155T 0.34 tolerated(0.23) benign(0.017) TCGA-A2-A3XU-01 3 72423861 72423861 G A RYBP 3'UTR 0.27 TCGA-A2-A3XU-01 4 8358662 8358662 G A RP11-774O3.3 RNA 0.36 TCGA-A2-A3XU-01 6 133118190 133118191 - A SLC18B1 Frame_Shift_Ins p.S39Ifs*25 0.36 TCGA-A2-A3XU-01 6 84269827 84269827 G A SNAP91 Missense_Mutation p.T876M 0.53 deleterious(0.02) probably_damaging(0.993) TCGA-A2-A3XU-01 7 6080848 6080848 T A EIF2AK1 Missense_Mutation p.E265V 0.34 deleterious(0.01) benign(0.028) TCGA-A2-A3XU-01 8 30038001 30038001 C T DCTN6 Intron 0.70 TCGA-A2-A3XU-01 8 97155798 97155798 A G GDF6 3'UTR 0.24 TCGA-A2-A3XU-01 9 28295319 28295319 C T LINGO2 5'UTR 0.39 TCGA-A2-A3XU-01 X 114425058 114425058 G A RBMXL3 Missense_Mutation p.V352I 0.36 tolerated_low_confidence(0.24) benign(0.067) TCGA-A2-A3XU-01 X 118717178 118717178 G T UBE2A Missense_Mutation p.R140L 0.54 deleterious(0.04) benign(0.117) TCGA-A2-A3XU-01 X 31950256 31950256 T A DMD Missense_Mutation p.S2235C 0.46 benign(0.077) TCGA-A2-A3XU-01 X 41416285 41416285 C T CASK Silent p.S602S 0.47 TCGA-A2-A3XV-01 10 119307895 119307895 G A EMX2 3'UTR 0.23 TCGA-A2-A3XV-01 10 73769554 73769554 C T CHST3 3'UTR 0.64 TCGA-A2-A3XV-01 11 74880301 74880301 T A SLCO2B1 Missense_Mutation p.S178T 0.24 tolerated(0.43) benign(0.437) TCGA-A2-A3XV-01 12 20766424 20766424 C T PDE3A Silent p.A353A 0.23 TCGA-A2-A3XV-01 12 56481922 56481922 G A ERBB3 Missense_Mutation p.G284R 0.50 deleterious(0) probably_damaging(0.981) TCGA-A2-A3XV-01 12 6128145 6128145 G A VWF Missense_Mutation p.P1480L 0.41 deleterious(0.04) probably_damaging(0.913) TCGA-A2-A3XV-01 13 113750783 113750783 C T MCF2L Silent p.G1058G 0.36 TCGA-A2-A3XV-01 13 25672472 25672472 T A PABPC3 3'UTR 0.26 TCGA-A2-A3XV-01 13 32527133 32527133 T C EEF1DP3 RNA 0.39 TCGA-A2-A3XV-01 14 53098909 53098909 G A GPR137C Missense_Mutation p.G250D 0.26 deleterious(0) possibly_damaging(0.662) TCGA-A2-A3XV-01 14 69349628 69349628 T C ACTN1 Missense_Mutation p.T594A 0.25 tolerated(0.14) benign(0.001) TCGA-A2-A3XV-01 16 23583089 23583089 A G UBFD1 3'UTR 0.24 TCGA-A2-A3XV-01 16 30678913 30678913 G T FBRS Nonsense_Mutation p.G682* 0.25 TCGA-A2-A3XV-01 16 75146546 75146546 C A LDHD Missense_Mutation p.A438S 0.28 tolerated(0.06) benign(0.026) TCGA-A2-A3XV-01 16 79632803 79632803 C A MAF Nonsense_Mutation p.E333* 0.37 TCGA-A2-A3XV-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.67 deleterious(0) probably_damaging(0.994) TCGA-A2-A3XV-01 17 3844308 3844308 C T ATP2A3 Missense_Mutation p.R686H 0.44 deleterious(0) probably_damaging(0.944) TCGA-A2-A3XV-01 17 56247845 56247845 G T OR4D2 Missense_Mutation p.V277F 0.22 deleterious(0) probably_damaging(0.939) TCGA-A2-A3XV-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.53 deleterious(0) probably_damaging(1) TCGA-A2-A3XV-01 18 21739776 21739776 A C CABYR Missense_Mutation p.Q294H 0.30 tolerated(0.06) benign(0.003) TCGA-A2-A3XV-01 18 3458337 3458337 T C TGIF1 3'UTR 0.29 TCGA-A2-A3XV-01 19 16528437 16528437 G A EPS15L1 Silent p.G373G 0.33 TCGA-A2-A3XV-01 19 16678946 16678946 A C SLC35E1 Missense_Mutation p.V176G 0.38 deleterious(0.03) possibly_damaging(0.739) TCGA-A2-A3XV-01 19 2853678 2853678 A G ZNF555 Missense_Mutation p.K539E 0.31 tolerated(0.06) probably_damaging(0.995) TCGA-A2-A3XV-01 19 7929727 7929727 G A EVI5L 3'Flank 0.18 TCGA-A2-A3XV-01 1 108226109 108226109 C A VAV3 Splice_Site p.X593_splice 0.30 TCGA-A2-A3XV-01 1 113212989 113212989 T C CAPZA1 3'UTR 0.44 TCGA-A2-A3XV-01 1 145282107 145282107 A G NOTCH2NL 3'UTR 0.18 TCGA-A2-A3XV-01 1 16350315 16350315 C T CLCNKA Nonsense_Mutation p.Q41* 0.16 TCGA-A2-A3XV-01 1 172558484 172558485 AA - SUCO Frame_Shift_Del p.E748Gfs*3 0.18 TCGA-A2-A3XV-01 1 182026518 182026518 C T ZNF648 Missense_Mutation p.A210T 0.42 tolerated(0.08) benign(0.218) TCGA-A2-A3XV-01 1 186277898 186277898 C T PRG4 Missense_Mutation p.A1016V 0.31 unknown(0) TCGA-A2-A3XV-01 1 46751042 46751042 G A LRRC41 Missense_Mutation p.S496F 0.35 deleterious(0) possibly_damaging(0.683) TCGA-A2-A3XV-01 1 9801173 9801173 C T CLSTN1 Missense_Mutation p.V500M 0.42 tolerated(0.35) benign(0.21) TCGA-A2-A3XV-01 21 31812899 31812899 G T KRTAP15-1 Missense_Mutation p.S85I 0.26 deleterious(0.01) possibly_damaging(0.837) TCGA-A2-A3XV-01 2 242758079 242758079 G A NEU4 Missense_Mutation p.R400K 0.28 tolerated(0.68) benign(0.035) TCGA-A2-A3XV-01 2 44553850 44553850 C - PREPL Splice_Site p.X582_splice 0.27 TCGA-A2-A3XV-01 2 73476273 73476273 G C CCT7 Missense_Mutation p.R313P 0.36 deleterious(0.01) possibly_damaging(0.604) TCGA-A2-A3XV-01 2 73717262 73717262 A G ALMS1 Missense_Mutation p.I2725V 0.37 benign(0.136) TCGA-A2-A3XV-01 4 57355634 57355634 G T SRP72 Missense_Mutation p.W435C 0.23 deleterious(0) probably_damaging(0.981) TCGA-A2-A3XV-01 5 124080468 124080485 CCACTGGAGGCCGGACCT - ZNF608 In_Frame_Del p.G67_G72del 0.31 TCGA-A2-A3XV-01 6 107854723 107854723 G A SOBP Missense_Mutation p.R161H 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-A2-A3XV-01 6 168344142 168344143 CT - MLLT4 Frame_Shift_Del p.Q1071Gfs*50 0.33 TCGA-A2-A3XV-01 6 31916210 31916210 A T CFB Missense_Mutation p.K821N 0.21 tolerated(0.16) benign(0.016) TCGA-A2-A3XV-01 6 56473029 56473029 T A DST Intron 0.13 TCGA-A2-A3XV-01 7 32209536 32209536 G C PDE1C Missense_Mutation p.L57V 0.27 tolerated_low_confidence(0.51) benign(0.004) TCGA-A2-A3XV-01 7 36554094 36554095 CG - AOAH Intron 0.27 TCGA-A2-A3XV-01 7 64151698 64151698 C T ZNF107 5'UTR 0.23 TCGA-A2-A3XV-01 8 145616200 145616200 T C ADCK5 Missense_Mutation p.Y163H 0.31 deleterious(0) probably_damaging(0.992) TCGA-A2-A3XV-01 8 24772014 24772014 C T NEFM Silent p.S236S 0.28 TCGA-A2-A3XV-01 9 137710523 137710523 C T COL5A1 Missense_Mutation p.P1418S 0.15 unknown(0) TCGA-A2-A3XV-01 9 21206881 21206881 C - IFNA10 Frame_Shift_Del p.K73Rfs*11 0.33 TCGA-A2-A3XV-01 9 98218572 98218572 C T PTCH1 Missense_Mutation p.V1098I 0.17 tolerated(0.06) probably_damaging(0.937) TCGA-A2-A3XV-01 X 123200024 123200024 G A STAG2 Splice_Site p.X699_splice 0.24 TCGA-A2-A3XW-01 10 99640046 99640046 A G CRTAC1 Silent p.S593S 0.12 TCGA-A2-A3XW-01 15 58477712 58477712 C G AQP9 3'UTR 0.36 TCGA-A2-A3XW-01 16 47703133 47703133 T C PHKB Missense_Mutation p.L812P 0.12 deleterious(0) probably_damaging(0.99) TCGA-A2-A3XW-01 16 88688702 88688702 C T ZC3H18 Missense_Mutation p.P525S 0.08 deleterious_low_confidence(0) unknown(0) TCGA-A2-A3XW-01 17 42031220 42031220 C T PYY Intron 0.11 TCGA-A2-A3XW-01 17 60526594 60526594 A G METTL2A 3'UTR 0.19 TCGA-A2-A3XW-01 1 151316906 151316906 G A RFX5 Missense_Mutation p.R154W 0.07 deleterious(0) probably_damaging(1) TCGA-A2-A3XW-01 1 16890070 16890070 G C NBPF1 3'UTR 0.11 TCGA-A2-A3XW-01 20 9460030 9460030 A G PLCB4 3'UTR 0.08 TCGA-A2-A3XW-01 2 20817755 20817755 G A HS1BP3 3'UTR 0.08 TCGA-A2-A3XW-01 7 28864386 28864386 T A CREB5 3'UTR 0.12 TCGA-A2-A3XW-01 7 95657586 95657586 C T DYNC1I1 Nonsense_Mutation p.R374* 0.06 TCGA-A2-A3XW-01 8 145626844 145626844 G C CPSF1 Missense_Mutation p.L96V 0.06 tolerated(0.07) possibly_damaging(0.718) TCGA-A2-A3XW-01 8 77618657 77618657 C T ZFHX4 Silent p.V778V 0.13 TCGA-A2-A3XW-01 9 138390428 138390428 T A C9orf116 Intron 0.11 TCGA-A2-A3XW-01 X 151820163 151820163 G A GABRQ Missense_Mutation p.R359Q 0.06 tolerated(0.59) benign(0.221) TCGA-A2-A3XW-01 X 24230180 24230180 A C ZFX 3'UTR 0.15 TCGA-A2-A3XX-01 10 105173781 105173781 A G PDCD11 Missense_Mutation p.N415S 0.36 tolerated(0.93) benign(0.009) TCGA-A2-A3XX-01 10 124917337 124917337 G C BUB3 Missense_Mutation p.V120L 0.25 tolerated(0.56) benign(0.075) TCGA-A2-A3XX-01 10 46258833 46258833 C A FAM21C Intron 0.31 TCGA-A2-A3XX-01 12 129180412 129180412 C T TMEM132C Missense_Mutation p.R565W 0.25 deleterious(0) probably_damaging(0.953) TCGA-A2-A3XX-01 12 2997172 2997172 C T RHNO1 Silent p.T88T 0.14 TCGA-A2-A3XX-01 12 52204033 52204034 - T AC068987.1 Frame_Shift_Ins p.L27Ffs*37 0.22 TCGA-A2-A3XX-01 13 58299971 58299971 A G PCDH17 3'UTR 0.18 TCGA-A2-A3XX-01 13 73321197 73321197 T A BORA Missense_Mutation p.M477K 0.18 deleterious(0) possibly_damaging(0.791) TCGA-A2-A3XX-01 15 78632841 78632841 G C CRABP1 Splice_Site p.X24_splice 0.25 TCGA-A2-A3XX-01 15 79750273 79750273 G C KIAA1024 Missense_Mutation p.S595T 0.14 deleterious(0.01) probably_damaging(0.96) TCGA-A2-A3XX-01 16 21771829 21771829 C T OTOA Silent p.L1130L 0.27 TCGA-A2-A3XX-01 16 21771830 21771830 T G OTOA Missense_Mutation p.L1130R 0.27 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-A2-A3XX-01 16 70708374 70708397 GGCACCCCCAGGCCATGGGGCTCC - MTSS1L In_Frame_Del p.G289_A296del 0.40 TCGA-A2-A3XX-01 16 90036346 90036346 C T CENPBD1 3'UTR 0.12 TCGA-A2-A3XX-01 17 47677090 47677090 C T SPOP 3'UTR 0.50 TCGA-A2-A3XX-01 17 75496229 75496229 G C SEPT9 3'UTR 0.56 TCGA-A2-A3XX-01 17 7579355 7579355 A G TP53 Missense_Mutation p.L111P 0.65 deleterious(0) probably_damaging(0.999) TCGA-A2-A3XX-01 18 11884160 11884160 C T MPPE1 3'UTR 0.14 TCGA-A2-A3XX-01 19 30935398 30935398 C T ZNF536 Missense_Mutation p.S310L 0.40 tolerated(0.23) probably_damaging(0.997) TCGA-A2-A3XX-01 19 46002919 46002919 G T PPM1N Intron 0.18 TCGA-A2-A3XX-01 19 54627965 54627965 T A PRPF31 Missense_Mutation p.F262Y 0.40 deleterious(0.01) probably_damaging(0.96) TCGA-A2-A3XX-01 19 56370215 56370215 G T NLRP4 Missense_Mutation p.A486S 0.27 tolerated(0.21) benign(0.064) TCGA-A2-A3XX-01 19 9027223 9027223 G T MUC16 Missense_Mutation p.S12221R 0.22 benign(0.19) TCGA-A2-A3XX-01 1 12942245 12942245 A T PRAMEF4 Missense_Mutation p.L102H 0.09 deleterious(0) probably_damaging(0.982) TCGA-A2-A3XX-01 1 176845678 176845678 G A ASTN1 Missense_Mutation p.A1153V 0.07 deleterious(0) benign(0.393) TCGA-A2-A3XX-01 1 212900389 212900389 G C NSL1 3'UTR 0.05 TCGA-A2-A3XX-01 1 225707103 225707103 C G ENAH Missense_Mutation p.R200P 0.10 tolerated_low_confidence(0.25) unknown(0) TCGA-A2-A3XX-01 1 226455722 226455722 G A LIN9 Missense_Mutation p.T267I 0.09 deleterious(0) probably_damaging(0.938) TCGA-A2-A3XX-01 20 24524032 24524032 G A SYNDIG1 Missense_Mutation p.R100H 0.13 tolerated(0.08) benign(0.027) TCGA-A2-A3XX-01 20 3209991 3209991 C T SLC4A11 Splice_Site p.X660_splice 0.47 TCGA-A2-A3XX-01 20 41306714 41306714 G A PTPRT Silent p.I315I 0.14 TCGA-A2-A3XX-01 22 18301671 18301671 C T MICAL3 Silent p.T1252T 0.16 TCGA-A2-A3XX-01 22 28378267 28378267 G A TTC28 Missense_Mutation p.S2463F 0.38 deleterious_low_confidence(0) benign(0.11) TCGA-A2-A3XX-01 22 31942884 31942884 G A SFI1 Missense_Mutation p.E126K 0.38 tolerated(0.22) benign(0.015) TCGA-A2-A3XX-01 2 17941357 17941357 G A GEN1 Missense_Mutation p.M49I 0.15 tolerated(0.47) benign(0.049) TCGA-A2-A3XX-01 2 71891438 71891438 C G DYSF Missense_Mutation p.L1682V 0.32 deleterious(0) probably_damaging(1) TCGA-A2-A3XX-01 2 96624383 96624383 G A ANKRD36C Missense_Mutation p.S354L 0.33 tolerated_low_confidence(0.23) benign(0.001) TCGA-A2-A3XX-01 3 68788351 68788351 C A FAM19A4 Splice_Site p.X96_splice 0.18 TCGA-A2-A3XX-01 3 98072873 98072873 T A OR5K4 Missense_Mutation p.M59K 0.55 deleterious(0) probably_damaging(0.973) TCGA-A2-A3XX-01 4 186507378 186507378 G A SORBS2 3'Flank 0.18 TCGA-A2-A3XX-01 4 62937615 62937615 A G LPHN3 3'UTR 0.18 TCGA-A2-A3XX-01 5 140590534 140590534 G A PCDHB12 Silent p.S685S 0.35 TCGA-A2-A3XX-01 6 133427343 133427343 T G LINC00326 RNA 0.20 TCGA-A2-A3XX-01 6 2892127 2892127 G A SERPINB9 Silent p.Y221Y 0.17 TCGA-A2-A3XX-01 6 36930968 36930968 G A PI16 Missense_Mutation p.V284I 0.20 tolerated(0.09) benign(0.016) TCGA-A2-A3XX-01 6 43753209 43753209 G A VEGFA 3'Flank 0.10 TCGA-A2-A3XX-01 7 117868028 117868028 G A ANKRD7 Intron 0.19 TCGA-A2-A3XX-01 7 142605793 142605793 A T TRPV5 Missense_Mutation p.S693T 0.18 tolerated(0.16) benign(0.164) TCGA-A2-A3XX-01 7 83643629 83643629 C G SEMA3A Missense_Mutation p.D236H 0.09 tolerated(0.16) probably_damaging(0.992) TCGA-A2-A3XX-01 7 99951187 99951187 G A PILRB 5'UTR 0.25 TCGA-A2-A3XX-01 8 126073417 126073417 G A KIAA0196 Silent p.F476F 0.61 TCGA-A2-A3XX-01 9 19102767 19102767 C T HAUS6 5'UTR 0.10 TCGA-A2-A3XX-01 X 114141666 114141666 G T HTR2C Missense_Mutation p.W355C 0.24 deleterious(0) probably_damaging(1) TCGA-A2-A3XX-01 X 125955311 125955311 G T CXorf64 Silent p.P230P 0.17 TCGA-A2-A3XZ-01 10 73579646 73579646 G A PSAP Silent p.L339L 0.23 TCGA-A2-A3XZ-01 11 107299537 107299537 G C CWF19L2 Missense_Mutation p.S474C 0.06 deleterious(0.03) benign(0.014) TCGA-A2-A3XZ-01 11 107299661 107299661 G C CWF19L2 Missense_Mutation p.Q433E 0.08 tolerated(0.25) benign(0.001) TCGA-A2-A3XZ-01 11 107299820 107299820 G C CWF19L2 Missense_Mutation p.H380D 0.09 tolerated(0.16) benign(0.011) TCGA-A2-A3XZ-01 11 107299906 107299906 G C CWF19L2 Missense_Mutation p.S351C 0.15 tolerated(0.1) possibly_damaging(0.572) TCGA-A2-A3XZ-01 11 73689402 73689402 C T UCP2 Missense_Mutation p.D8N 0.15 tolerated(0.07) benign(0.001) TCGA-A2-A3XZ-01 12 13102974 13102974 C T GPRC5D Silent p.V115V 0.13 TCGA-A2-A3XZ-01 12 65116868 65116868 C T GNS Missense_Mutation p.R409Q 0.11 deleterious(0.01) possibly_damaging(0.782) TCGA-A2-A3XZ-01 12 76747487 76747500 CATACAACTAAAAG - OSBPL8 3'UTR 0.09 TCGA-A2-A3XZ-01 13 26138117 26138117 A T ATP8A2 Missense_Mutation p.D474V 0.16 tolerated(0.06) benign(0.255) TCGA-A2-A3XZ-01 14 55255695 55255695 G - SAMD4A 3'UTR 0.12 TCGA-A2-A3XZ-01 17 1486601 1486601 C T SLC43A2 Missense_Mutation p.R416Q 0.27 tolerated(0.06) possibly_damaging(0.573) TCGA-A2-A3XZ-01 17 42266372 42266372 C T TMUB2 Intron 0.18 TCGA-A2-A3XZ-01 17 42427675 42427675 C A GRN Silent p.V143V 0.12 TCGA-A2-A3XZ-01 17 58512569 58512569 C G C17orf64 3'Flank 0.05 TCGA-A2-A3XZ-01 17 61661011 61661011 C T DCAF7 Intron 0.12 TCGA-A2-A3XZ-01 19 51920149 51920149 C T SIGLEC10 Silent p.P159P 0.13 TCGA-A2-A3XZ-01 19 53117169 53117169 T A ZNF83 Missense_Mutation p.I217F 0.17 tolerated(0.68) probably_damaging(0.921) TCGA-A2-A3XZ-01 19 56089262 56089262 C T ZNF579 3'UTR 0.12 TCGA-A2-A3XZ-01 1 151774341 151774341 G T LINGO4 Silent p.V280V 0.38 TCGA-A2-A3XZ-01 1 246829605 246829605 C T CNST 3'UTR 0.07 TCGA-A2-A3XZ-01 20 43577409 43577409 G C TOMM34 Silent p.L220L 0.11 TCGA-A2-A3XZ-01 2 152507221 152507221 C G NEB Missense_Mutation p.G2365A 0.27 probably_damaging(0.957) TCGA-A2-A3XZ-01 2 160088774 160088774 G A TANC1 3'UTR 0.23 TCGA-A2-A3XZ-01 2 203693719 203693719 C G ICA1L Missense_Mutation p.G5A 0.22 tolerated(0.3) benign(0.059) TCGA-A2-A3XZ-01 2 218940228 218940228 A T RUFY4 Missense_Mutation p.E358V 0.21 deleterious(0.01) possibly_damaging(0.494) TCGA-A2-A3XZ-01 2 26534175 26534175 G A GPR113 Silent p.F807F 0.25 TCGA-A2-A3XZ-01 2 37334464 37334464 C G EIF2AK2 Missense_Mutation p.L536F 0.15 deleterious(0) probably_damaging(1) TCGA-A2-A3XZ-01 2 95480994 95480994 G C ANKRD20A8P RNA 0.09 TCGA-A2-A3XZ-01 3 197894708 197894708 G A FAM157A RNA 0.07 TCGA-A2-A3XZ-01 3 20168950 20168950 G A KAT2B Missense_Mutation p.R553H 0.16 deleterious(0.03) benign(0.126) TCGA-A2-A3XZ-01 3 50152930 50152930 G A RBM5 Missense_Mutation p.E637K 0.21 tolerated(0.36) benign(0.107) TCGA-A2-A3XZ-01 4 104065751 104065751 A G CENPE Missense_Mutation p.Y1628H 0.25 benign(0.001) TCGA-A2-A3XZ-01 4 25379135 25379135 C G ANAPC4 Missense_Mutation p.S29W 0.08 deleterious(0) probably_damaging(0.999) TCGA-A2-A3XZ-01 4 53468094 53468094 G A USP46 Silent p.F283F 0.15 TCGA-A2-A3XZ-01 4 88099658 88099658 C T KLHL8 Missense_Mutation p.R356K 0.26 deleterious(0) probably_damaging(0.985) TCGA-A2-A3XZ-01 5 140856230 140856230 C T PCDHGC3 Missense_Mutation p.R183C 0.18 deleterious(0.02) possibly_damaging(0.809) TCGA-A2-A3XZ-01 6 108497706 108497706 G A NR2E1 Splice_Site p.X87_splice 0.18 TCGA-A2-A3XZ-01 6 149867100 149867100 G A PPIL4 Silent p.I14I 0.13 TCGA-A2-A3XZ-01 6 170592883 170592883 G C DLL1 Missense_Mutation p.T495S 0.24 tolerated(0.06) possibly_damaging(0.74) TCGA-A2-A3XZ-01 6 31654914 31654914 G A ABHD16A 3'UTR 0.12 TCGA-A2-A3XZ-01 6 3270217 3270217 C T SLC22A23 3'UTR 0.10 TCGA-A2-A3XZ-01 7 150171141 150171141 A T GIMAP8 Missense_Mutation p.N242Y 0.09 tolerated(0.19) possibly_damaging(0.526) TCGA-A2-A3XZ-01 7 150938994 150938994 C T SMARCD3 Missense_Mutation p.R249H 0.19 tolerated(0.11) benign(0.018) TCGA-A2-A3XZ-01 7 35734033 35734033 G C HERPUD2 5'UTR 0.10 TCGA-A2-A3XZ-01 7 56155390 56155390 C T PHKG1 Missense_Mutation p.G55S 0.15 tolerated(0.37) benign(0.371) TCGA-A2-A3XZ-01 7 5643182 5643182 G T FSCN1 Missense_Mutation p.A349S 0.19 deleterious(0) possibly_damaging(0.713) TCGA-A2-A3XZ-01 8 41367260 41367260 C G GOLGA7 3'UTR 0.16 TCGA-A2-A3XZ-01 9 130500738 130500738 T C SH2D3C 3'UTR 0.19 TCGA-A2-A3XZ-01 9 134165696 134165696 G A PPAPDC3 Silent p.A104A 0.14 TCGA-A2-A3XZ-01 9 140471972 140471973 - G DPH7 Frame_Shift_Ins p.L80Sfs*46 0.08 TCGA-A2-A3XZ-01 9 69200475 69200475 G C FOXD4L6 Missense_Mutation p.L380V 0.15 tolerated_low_confidence(0.21) benign(0) TCGA-A2-A3XZ-01 X 24625919 24625919 C T PCYT1B Missense_Mutation p.A93T 0.17 deleterious(0) probably_damaging(0.997) TCGA-A2-A3XZ-01 X 35969264 35969264 C T CXorf22 Nonsense_Mutation p.Q225* 0.17 TCGA-A2-A3XZ-01 X 64959699 64959699 C T MSN Missense_Mutation p.R560C 0.16 deleterious(0) probably_damaging(0.999) TCGA-A2-A3Y0-01 10 104239003 104239003 C T ACTR1A 3'UTR 0.18 TCGA-A2-A3Y0-01 10 37508106 37508106 T C ANKRD30A Missense_Mutation p.S1100P 0.27 deleterious(0) benign(0.094) TCGA-A2-A3Y0-01 10 73567616 73567616 C T CDH23 Silent p.D618D 0.06 TCGA-A2-A3Y0-01 11 1031654 1031654 G C MUC6 Missense_Mutation p.L146V 0.52 unknown(0) TCGA-A2-A3Y0-01 11 117109606 117109606 C T RNF214 Missense_Mutation p.R133W 0.11 deleterious_low_confidence(0.03) benign(0.257) TCGA-A2-A3Y0-01 11 118373416 118373416 A - KMT2A Frame_Shift_Del p.R2271Gfs*6 0.31 TCGA-A2-A3Y0-01 11 126294819 126294819 C T KIRREL3 Missense_Mutation p.G665S 0.56 tolerated(0.3) benign(0.003) TCGA-A2-A3Y0-01 11 128963540 128963540 G C ARHGAP32 Silent p.V155V 0.08 TCGA-A2-A3Y0-01 11 129802065 129802065 G A PRDM10 Missense_Mutation p.R407C 0.25 deleterious(0) probably_damaging(0.997) TCGA-A2-A3Y0-01 11 1973402 1973402 C A MRPL23 Missense_Mutation p.N62K 0.11 tolerated(0.43) benign(0.319) TCGA-A2-A3Y0-01 11 24750806 24750806 C T LUZP2 Missense_Mutation p.L52F 0.11 deleterious(0) probably_damaging(0.996) TCGA-A2-A3Y0-01 11 26660720 26660720 C G ANO3 Silent p.L691L 0.44 TCGA-A2-A3Y0-01 11 45204670 45204670 G A PRDM11 Nonsense_Mutation p.W161* 0.19 TCGA-A2-A3Y0-01 11 47270443 47270443 G A ACP2 5'UTR 0.48 TCGA-A2-A3Y0-01 11 57080067 57080067 C G TNKS1BP1 Missense_Mutation p.A699P 0.27 deleterious(0.03) possibly_damaging(0.471) TCGA-A2-A3Y0-01 11 66189985 66189985 G A NPAS4 Missense_Mutation p.V131M 0.34 tolerated(0.9) benign(0.178) TCGA-A2-A3Y0-01 11 68772888 68772888 T G MRGPRF Missense_Mutation p.D297A 0.13 tolerated(0.21) probably_damaging(0.909) TCGA-A2-A3Y0-01 11 82997068 82997068 C G CCDC90B 5'UTR 0.55 TCGA-A2-A3Y0-01 11 92088166 92088166 C T FAT3 Missense_Mutation p.P963L 0.44 possibly_damaging(0.791) TCGA-A2-A3Y0-01 12 100957179 100957179 A G NR1H4 Missense_Mutation p.N458S 0.51 tolerated(0.33) benign(0.014) TCGA-A2-A3Y0-01 12 122975062 122975062 C G ZCCHC8 Missense_Mutation p.E124Q 0.43 deleterious(0.03) benign(0.073) TCGA-A2-A3Y0-01 12 124332600 124332600 G C DNAH10 Missense_Mutation p.L1851F 0.51 probably_damaging(0.998) TCGA-A2-A3Y0-01 12 1943943 1943943 C G LRTM2 3'UTR 0.29 TCGA-A2-A3Y0-01 12 21036396 21036396 C G SLCO1B3 Missense_Mutation p.N514K 0.31 deleterious(0.05) benign(0.057) TCGA-A2-A3Y0-01 12 46662748 46662748 A - SLC38A1 5'UTR 0.29 TCGA-A2-A3Y0-01 12 50476112 50476112 G C ASIC1 3'UTR 0.35 TCGA-A2-A3Y0-01 12 52164368 52164368 G C SCN8A Missense_Mutation p.K1182N 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-A2-A3Y0-01 12 52312795 52312795 T A ACVRL1 Missense_Mutation p.F425I 0.06 deleterious(0) probably_damaging(1) TCGA-A2-A3Y0-01 12 53189396 53189396 C T KRT3 Missense_Mutation p.G144D 0.29 tolerated(0.19) unknown(0) TCGA-A2-A3Y0-01 12 57556676 57556676 T C LRP1 Missense_Mutation p.C814R 0.10 probably_damaging(0.949) TCGA-A2-A3Y0-01 12 57591445 57591445 C T LRP1 Nonsense_Mutation p.Q3094* 0.31 TCGA-A2-A3Y0-01 12 89984131 89984131 C G ATP2B1 3'UTR 0.28 TCGA-A2-A3Y0-01 12 96389672 96389672 A G HAL Missense_Mutation p.V6A 0.16 tolerated_low_confidence(0.07) benign(0.088) TCGA-A2-A3Y0-01 13 20049728 20049728 G T TPTE2 Nonsense_Mutation p.S72* 0.29 TCGA-A2-A3Y0-01 13 40175303 40175303 A G LHFP Silent p.F17F 0.29 TCGA-A2-A3Y0-01 13 45149669 45149669 T G TSC22D1 Missense_Mutation p.Q181P 0.26 deleterious(0.04) probably_damaging(0.99) TCGA-A2-A3Y0-01 13 99090019 99090019 G C FARP1 Intron 0.09 TCGA-A2-A3Y0-01 14 104028388 104028388 G C BAG5 5'UTR 0.59 TCGA-A2-A3Y0-01 14 105201412 105201412 A G ADSSL1 Missense_Mutation p.H126R 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-A2-A3Y0-01 14 23995602 23995602 C T ZFHX2 Silent p.K1183K 0.34 TCGA-A2-A3Y0-01 14 24648629 24648629 G A REC8 Missense_Mutation p.E426K 0.50 deleterious(0.01) benign(0.263) TCGA-A2-A3Y0-01 14 61176557 61176557 C G SIX4 3'UTR 0.37 TCGA-A2-A3Y0-01 14 65414417 65414417 A G RAB15 3'UTR 0.38 TCGA-A2-A3Y0-01 14 75576564 75576564 C G NEK9 Missense_Mutation p.E336Q 0.48 tolerated(0.23) benign(0.192) TCGA-A2-A3Y0-01 15 24927172 24927172 T A NPAP1 3'UTR 0.14 TCGA-A2-A3Y0-01 15 24927173 24927173 C A NPAP1 3'UTR 0.14 TCGA-A2-A3Y0-01 15 49917567 49917567 A G DTWD1 Missense_Mutation p.Y68C 0.13 deleterious(0) probably_damaging(0.997) TCGA-A2-A3Y0-01 15 56126305 56126305 G C NEDD4 Missense_Mutation p.D1134E 0.20 deleterious(0) probably_damaging(0.997) TCGA-A2-A3Y0-01 15 65114490 65114490 C G PIF1 Silent p.G264G 0.21 TCGA-A2-A3Y0-01 15 75123449 75123449 G C CPLX3 3'UTR 0.33 TCGA-A2-A3Y0-01 15 79277510 79277510 C T RASGRF1 Missense_Mutation p.E1101K 0.06 tolerated(0.39) benign(0.004) TCGA-A2-A3Y0-01 15 89416111 89416111 G C ACAN Splice_Site p.X2397_splice 0.45 TCGA-A2-A3Y0-01 15 93524061 93524061 A G CHD2 Missense_Mutation p.K965E 0.22 deleterious(0) probably_damaging(0.962) TCGA-A2-A3Y0-01 16 10997664 10997664 G T CIITA Silent p.R283R 0.21 TCGA-A2-A3Y0-01 16 2161709 2161709 C A PKD1 Silent p.S1153S 0.27 TCGA-A2-A3Y0-01 16 2499874 2499874 A G CCNF Missense_Mutation p.Y482C 0.15 tolerated(0.31) benign(0.003) TCGA-A2-A3Y0-01 16 27503744 27503744 C G GTF3C1 Missense_Mutation p.E1022D 0.08 tolerated(0.19) benign(0.024) TCGA-A2-A3Y0-01 16 2946579 2946579 C G FLYWCH2 Silent p.V43V 0.08 TCGA-A2-A3Y0-01 16 49672766 49672766 T C ZNF423 Silent p.Q99Q 0.46 TCGA-A2-A3Y0-01 16 55536778 55536778 C G MMP2 Silent p.A619A 0.23 TCGA-A2-A3Y0-01 16 57850310 57850310 A G CTD-2600O9.1 Missense_Mutation p.T77A 0.22 benign(0.388) TCGA-A2-A3Y0-01 16 68156617 68156617 C T NFATC3 Silent p.S277S 0.21 TCGA-A2-A3Y0-01 16 72110338 72110338 T A HPR Missense_Mutation p.N135K 0.27 deleterious(0.01) benign(0.217) TCGA-A2-A3Y0-01 16 72821415 72821415 G A ZFHX3 Missense_Mutation p.S3587L 0.34 unknown(0) TCGA-A2-A3Y0-01 16 75263783 75263783 A G BCAR1 Missense_Mutation p.Y793H 0.32 deleterious(0) probably_damaging(1) TCGA-A2-A3Y0-01 16 81095551 81095551 C T C16orf46 Missense_Mutation p.A135T 0.22 tolerated(0.38) benign(0.086) TCGA-A2-A3Y0-01 16 89776248 89776248 C A VPS9D1 Missense_Mutation p.C442F 0.24 deleterious(0) probably_damaging(0.981) TCGA-A2-A3Y0-01 17 16827410 16827410 G A TBC1D27 RNA 0.08 TCGA-A2-A3Y0-01 17 19246610 19246610 G C B9D1 3'UTR 0.21 TCGA-A2-A3Y0-01 17 25630544 25630544 G C WSB1 Missense_Mutation p.E121Q 0.11 tolerated(0.18) probably_damaging(0.99) TCGA-A2-A3Y0-01 17 44851158 44851158 C A WNT3 Missense_Mutation p.M66I 0.55 deleterious(0.02) benign(0.199) TCGA-A2-A3Y0-01 17 5487006 5487011 CCTGCC - NLRP1 Splice_Site p.X89_splice 0.09 TCGA-A2-A3Y0-01 17 6704183 6704183 T G TEKT1 Missense_Mutation p.K311T 0.54 deleterious(0) possibly_damaging(0.876) TCGA-A2-A3Y0-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.38 TCGA-A2-A3Y0-01 17 76083110 76083110 C A TNRC6C Silent p.G1243G 0.27 TCGA-A2-A3Y0-01 17 76445507 76445507 C A DNAH17 Missense_Mutation p.V3720F 0.49 possibly_damaging(0.562) TCGA-A2-A3Y0-01 18 31326647 31326647 T C ASXL3 3'UTR 0.23 TCGA-A2-A3Y0-01 18 44126941 44126941 T A LOXHD1 Missense_Mutation p.E33V 0.27 deleterious(0) probably_damaging(0.995) TCGA-A2-A3Y0-01 18 60572515 60572515 A G PHLPP1 Silent p.S902S 0.12 TCGA-A2-A3Y0-01 18 74536333 74536333 T C ZNF236 Missense_Mutation p.L7P 0.13 tolerated_low_confidence(0.36) benign(0.008) TCGA-A2-A3Y0-01 18 8796256 8796256 G C SOGA2 Missense_Mutation p.L679F 0.17 deleterious(0) probably_damaging(0.986) TCGA-A2-A3Y0-01 19 12502700 12502700 C G ZNF799 Missense_Mutation p.C171S 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-A2-A3Y0-01 19 17186258 17186258 G C HAUS8 5'UTR 0.26 TCGA-A2-A3Y0-01 19 19367600 19367600 G C HAPLN4 3'UTR 0.38 TCGA-A2-A3Y0-01 19 2476296 2476302 TTTGCAA - GADD45B 5'UTR 0.20 TCGA-A2-A3Y0-01 19 31766410 31766410 G A TSHZ3 3'UTR 0.11 TCGA-A2-A3Y0-01 19 35646253 35646253 G A FXYD5 5'UTR 0.42 TCGA-A2-A3Y0-01 19 36673716 36673716 G C ZNF565 Silent p.V384V 0.21 TCGA-A2-A3Y0-01 19 38817294 38817294 C G KCNK6 Silent p.L128L 0.34 TCGA-A2-A3Y0-01 19 39390822 39390822 C G NFKBIB Silent p.V50V 0.11 TCGA-A2-A3Y0-01 19 48306017 48306017 G C TPRX1 Missense_Mutation p.A84G 0.33 deleterious(0.03) unknown(0) TCGA-A2-A3Y0-01 19 49657150 49657150 C G HRC Missense_Mutation p.E449Q 0.32 tolerated(0.3) benign(0.201) TCGA-A2-A3Y0-01 19 50474627 50474627 A C SIGLEC16 RNA 0.13 TCGA-A2-A3Y0-01 19 53885560 53885560 G C ZNF525 3'UTR 0.17 TCGA-A2-A3Y0-01 19 54666835 54666835 C A TMC4 Missense_Mutation p.Q451H 0.14 deleterious(0.02) possibly_damaging(0.778) TCGA-A2-A3Y0-01 19 56466905 56466905 G A NLRP8 Missense_Mutation p.R494Q 0.31 tolerated(1) benign(0.041) TCGA-A2-A3Y0-01 19 58370261 58370261 C T CTD-2583A14.10 Missense_Mutation p.R161C 0.16 tolerated(1) benign(0) TCGA-A2-A3Y0-01 19 8381404 8381404 A G NDUFA7 Missense_Mutation p.L76P 0.21 deleterious(0) probably_damaging(1) TCGA-A2-A3Y0-01 1 109512850 109512850 A G WDR47 3'UTR 0.23 TCGA-A2-A3Y0-01 1 120056825 120056825 G A HSD3B1 Missense_Mutation p.G227S 0.28 deleterious(0.05) possibly_damaging(0.764) TCGA-A2-A3Y0-01 1 148341944 148341944 G C NBPF20 Missense_Mutation p.T210S 0.09 possibly_damaging(0.646) TCGA-A2-A3Y0-01 1 150528007 150528007 G A ADAMTSL4 Missense_Mutation p.G446E 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-A2-A3Y0-01 1 151316744 151316744 T A RFX5 Missense_Mutation p.S162C 0.30 deleterious(0.03) benign(0.397) TCGA-A2-A3Y0-01 1 153177231 153177231 C T LELP1 Silent p.P16P 0.13 TCGA-A2-A3Y0-01 1 155028475 155028475 C T ADAM15 Missense_Mutation p.T248I 0.32 tolerated(0.11) possibly_damaging(0.772) TCGA-A2-A3Y0-01 1 159901663 159901663 C G IGSF9 Missense_Mutation p.R434P 0.34 deleterious(0) probably_damaging(0.997) TCGA-A2-A3Y0-01 1 172569280 172569280 C G SUCO Nonsense_Mutation p.S997* 0.08 TCGA-A2-A3Y0-01 1 177133845 177133845 C G ASTN1 5'Flank 0.33 TCGA-A2-A3Y0-01 1 1848258 1848258 C G CALML6 Missense_Mutation p.N107K 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-A2-A3Y0-01 1 186158885 186158885 C T HMCN1 Nonsense_Mutation p.R5595* 0.38 TCGA-A2-A3Y0-01 1 2103743 2103743 G C PRKCZ Missense_Mutation p.G401R 0.58 deleterious(0) probably_damaging(0.999) TCGA-A2-A3Y0-01 1 228434340 228434340 C T OBSCN Missense_Mutation p.T1382M 0.32 benign(0.062) TCGA-A2-A3Y0-01 1 233136225 233136225 G C PCNXL2 Missense_Mutation p.I1718M 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-A2-A3Y0-01 1 237620028 237620028 G T RYR2 Missense_Mutation p.E535D 0.23 benign(0.183) TCGA-A2-A3Y0-01 1 247875785 247875785 G T OR6F1 Silent p.T91T 0.18 TCGA-A2-A3Y0-01 1 28562699 28562699 C G ATPIF1 Missense_Mutation p.A2G 0.13 deleterious(0.01) possibly_damaging(0.903) TCGA-A2-A3Y0-01 1 3683150 3683150 G A CCDC27 Missense_Mutation p.E502K 0.61 deleterious(0) probably_damaging(0.957) TCGA-A2-A3Y0-01 1 43042704 43042704 T G CCDC30 Missense_Mutation p.L290R 0.14 deleterious(0) possibly_damaging(0.728) TCGA-A2-A3Y0-01 1 46087625 46087625 G A CCDC17 Missense_Mutation p.P337L 0.27 tolerated(0.64) benign(0.001) TCGA-A2-A3Y0-01 1 46867863 46867863 C G FAAH Missense_Mutation p.T99S 0.10 tolerated(0.77) benign(0.118) TCGA-A2-A3Y0-01 1 52863361 52863361 A G ORC1 Missense_Mutation p.V133A 0.08 tolerated(0.07) possibly_damaging(0.764) TCGA-A2-A3Y0-01 1 6100694 6100694 G C AL035406.1 Missense_Mutation p.S6C 0.67 unknown(0) TCGA-A2-A3Y0-01 1 93309463 93309463 C G FAM69A Missense_Mutation p.R255T 0.38 tolerated(0.16) possibly_damaging(0.61) TCGA-A2-A3Y0-01 20 13605842 13605842 G A TASP1 Missense_Mutation p.A68V 0.29 deleterious(0) probably_damaging(0.98) TCGA-A2-A3Y0-01 20 33764193 33764193 T G PROCR Missense_Mutation p.L182R 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A3Y0-01 20 48252797 48252797 T C B4GALT5 3'UTR 0.28 TCGA-A2-A3Y0-01 20 48523167 48523167 C G SPATA2 Missense_Mutation p.K184N 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-A2-A3Y0-01 21 34106299 34106299 C G PAXBP1 3'UTR 0.12 TCGA-A2-A3Y0-01 21 40590186 40590186 G C BRWD1 Missense_Mutation p.A1184G 0.11 tolerated(0.1) probably_damaging(0.996) TCGA-A2-A3Y0-01 21 47575476 47575476 T G FTCD 5'UTR 0.22 TCGA-A2-A3Y0-01 21 47669888 47669888 C T MCM3AP Intron 0.16 TCGA-A2-A3Y0-01 2 112704979 112704979 C T MERTK Missense_Mutation p.H198Y 0.09 tolerated(0.7) benign(0.012) TCGA-A2-A3Y0-01 2 172778933 172778957 GACTGTGCGGTCACTTCCGGCCCGG - HAT1 5'Flank 0.14 TCGA-A2-A3Y0-01 2 179410772 179410772 G A TTN Missense_Mutation p.L31731F 0.29 TCGA-A2-A3Y0-01 2 179718298 179718298 A G CCDC141 Silent p.Y1038Y 0.25 TCGA-A2-A3Y0-01 2 197065844 197065844 G A HECW2 3'UTR 0.29 TCGA-A2-A3Y0-01 2 202483806 202483806 G A ALS2CR11 Silent p.N16N 0.36 TCGA-A2-A3Y0-01 2 219209616 219209616 G C PNKD Missense_Mutation p.G357A 0.11 tolerated(0.61) benign(0.008) TCGA-A2-A3Y0-01 2 219301895 219301895 G A VIL1 Missense_Mutation p.A674T 0.32 deleterious(0.04) possibly_damaging(0.736) TCGA-A2-A3Y0-01 2 225244764 225244764 A C FAM124B Silent p.P298P 0.09 TCGA-A2-A3Y0-01 2 228777092 228777092 G T DAW1 Intron 0.29 TCGA-A2-A3Y0-01 2 232321709 232321709 T C NCL Intron 0.31 TCGA-A2-A3Y0-01 2 232826404 232826404 G C DIS3L2 5'UTR 0.18 TCGA-A2-A3Y0-01 2 242076635 242076635 G C PASK Silent p.T307T 0.37 TCGA-A2-A3Y0-01 2 283135 283135 G A FAM150B Silent p.V143V 0.10 TCGA-A2-A3Y0-01 2 44023934 44023934 G T DYNC2LI1 Missense_Mutation p.M218I 0.11 tolerated(0.93) benign(0.002) TCGA-A2-A3Y0-01 2 55467276 55467276 C T MTIF2 Missense_Mutation p.V581I 0.27 tolerated(0.19) benign(0.004) TCGA-A2-A3Y0-01 2 80529855 80529855 C T LRRTM1 Missense_Mutation p.E364K 0.33 tolerated(0.69) benign(0.2) TCGA-A2-A3Y0-01 2 95513888 95513888 A T RNU6-1320P 5'Flank 0.30 TCGA-A2-A3Y0-01 3 142840143 142840143 A T CHST2 Missense_Mutation p.D162V 0.31 tolerated(0.23) unknown(0) TCGA-A2-A3Y0-01 3 142840144 142840144 C A CHST2 Missense_Mutation p.D162E 0.32 tolerated(1) unknown(0) TCGA-A2-A3Y0-01 3 196088786 196088786 C G UBXN7 Missense_Mutation p.A413P 0.18 deleterious(0.02) probably_damaging(0.962) TCGA-A2-A3Y0-01 3 3189339 3189339 A G TRNT1 Silent p.A336A 0.16 TCGA-A2-A3Y0-01 3 38530908 38530908 G C ACVR2B 3'UTR 0.14 TCGA-A2-A3Y0-01 3 38533867 38533867 C T ACVR2B 3'UTR 0.33 TCGA-A2-A3Y0-01 3 402080 402080 C T CHL1 Missense_Mutation p.L427F 0.18 deleterious(0) probably_damaging(1) TCGA-A2-A3Y0-01 3 46488803 46488803 G C LTF Missense_Mutation p.N433K 0.35 tolerated(0.1) possibly_damaging(0.47) TCGA-A2-A3Y0-01 3 63645407 63645407 G A SNTN Missense_Mutation p.R51K 0.22 tolerated(1) benign(0.002) TCGA-A2-A3Y0-01 3 65350532 65350532 T C MAGI1 Missense_Mutation p.T1096A 0.18 tolerated(0.93) benign(0.003) TCGA-A2-A3Y0-01 3 73651605 73651605 T C PDZRN3 Missense_Mutation p.H273R 0.19 tolerated(0.24) benign(0) TCGA-A2-A3Y0-01 3 75471823 75471823 T C FAM86DP RNA 0.40 TCGA-A2-A3Y0-01 3 8672597 8672597 G A SSUH2 Missense_Mutation p.P140L 0.18 deleterious(0.01) probably_damaging(1) TCGA-A2-A3Y0-01 3 9880852 9880852 A T RPUSD3 Missense_Mutation p.F243Y 0.18 tolerated(0.06) possibly_damaging(0.517) TCGA-A2-A3Y0-01 4 106746941 106746941 G A GSTCD Missense_Mutation p.G505E 0.27 tolerated(0.07) probably_damaging(0.993) TCGA-A2-A3Y0-01 4 108535386 108535386 G T PAPSS1 3'UTR 0.16 TCGA-A2-A3Y0-01 4 115543939 115543939 G A UGT8 Intron 0.36 TCGA-A2-A3Y0-01 4 151656509 151656509 G C LRBA Missense_Mutation p.S1885R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A3Y0-01 4 154197120 154197120 C G TRIM2 Silent p.P97P 0.09 TCGA-A2-A3Y0-01 4 17634018 17634018 G A FAM184B 3'UTR 0.39 TCGA-A2-A3Y0-01 4 17812654 17812654 C A NCAPG 5'UTR 0.31 TCGA-A2-A3Y0-01 4 186318062 186318062 C A ANKRD37 5'UTR 0.10 TCGA-A2-A3Y0-01 4 46967110 46967110 A C GABRA4 Missense_Mutation p.F337L 0.21 deleterious(0) probably_damaging(0.999) TCGA-A2-A3Y0-01 4 70351053 70351053 A G UGT2B4 Silent p.L395L 0.18 TCGA-A2-A3Y0-01 4 71255410 71255410 C T SMR3B Missense_Mutation p.P29S 0.31 deleterious_low_confidence(0) unknown(0) TCGA-A2-A3Y0-01 4 71472137 71472137 T C AMBN Missense_Mutation p.L345P 0.18 tolerated(0.22) possibly_damaging(0.544) TCGA-A2-A3Y0-01 4 73962844 73962844 C A ANKRD17 Missense_Mutation p.V1723F 0.16 benign(0) TCGA-A2-A3Y0-01 5 112769590 112769590 C G TSSK1B Missense_Mutation p.G316A 0.12 tolerated_low_confidence(0.49) benign(0.028) TCGA-A2-A3Y0-01 5 134086731 134086731 C G CAMLG 3'UTR 0.21 TCGA-A2-A3Y0-01 5 137589525 137589525 G A GFRA3 Silent p.C318C 0.38 TCGA-A2-A3Y0-01 5 137654919 137654919 G C CDC25C Missense_Mutation p.Q202E 0.27 tolerated(0.25) benign(0.124) TCGA-A2-A3Y0-01 5 138210118 138210118 G C LRRTM2 Silent p.L44L 0.16 TCGA-A2-A3Y0-01 5 140209511 140209511 A C PCDHA6 Missense_Mutation p.Q612P 0.19 deleterious_low_confidence(0.01) benign(0.038) TCGA-A2-A3Y0-01 5 141387461 141387461 A G GNPDA1 Silent p.S43S 0.11 TCGA-A2-A3Y0-01 5 149669201 149669201 C A CAMK2A 5'Flank 0.29 TCGA-A2-A3Y0-01 5 158140136 158140136 G A EBF1 Missense_Mutation p.A404V 0.11 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-A2-A3Y0-01 5 158630600 158630600 G A RNF145 Missense_Mutation p.A39V 0.42 tolerated(0.13) benign(0.11) TCGA-A2-A3Y0-01 5 159640763 159640763 T G FABP6 Silent p.S24S 0.22 TCGA-A2-A3Y0-01 5 178459848 178459848 G A ZNF879 Missense_Mutation p.S300N 0.11 tolerated(0.15) benign(0.25) TCGA-A2-A3Y0-01 5 179260248 179260248 C G SQSTM1 Splice_Site p.X323_splice 0.38 TCGA-A2-A3Y0-01 5 41018468 41018468 G A MROH2B Missense_Mutation p.A913V 0.47 deleterious(0.04) benign(0.103) TCGA-A2-A3Y0-01 5 56160701 56160701 C A MAP3K1 Missense_Mutation p.N325K 0.12 deleterious(0) probably_damaging(0.985) TCGA-A2-A3Y0-01 5 70754468 70754468 C T BDP1 Missense_Mutation p.S92L 0.13 tolerated(0.2) probably_damaging(0.992) TCGA-A2-A3Y0-01 6 108985251 108985251 G A FOXO3 Silent p.G405G 0.33 TCGA-A2-A3Y0-01 6 135611584 135611584 C G AHI1 Missense_Mutation p.G1189R 0.39 tolerated_low_confidence(0.25) benign(0.365) TCGA-A2-A3Y0-01 6 139561747 139561747 T A TXLNB 3'UTR 0.09 TCGA-A2-A3Y0-01 6 159084348 159084348 G A SYTL3 Silent p.E16E 0.37 TCGA-A2-A3Y0-01 6 165693507 165693507 T A C6orf118 3'UTR 0.16 TCGA-A2-A3Y0-01 6 24843451 24843451 C A FAM65B Missense_Mutation p.R520L 0.30 tolerated(0.27) benign(0.165) TCGA-A2-A3Y0-01 6 33169360 33169360 G C SLC39A7 Missense_Mutation p.S113T 0.09 tolerated(0.21) unknown(0) TCGA-A2-A3Y0-01 6 33385782 33385808 CCTACGCTGGTACAGGAGAGTTGATCT - CUTA Intron 0.18 TCGA-A2-A3Y0-01 6 35216499 35216499 G C SCUBE3 3'UTR 0.16 TCGA-A2-A3Y0-01 6 35992347 35992347 C G SLC26A8 5'UTR 0.44 TCGA-A2-A3Y0-01 6 44220997 44220997 G A HSP90AB1 Silent p.K649K 0.13 TCGA-A2-A3Y0-01 6 44355528 44355528 C G CDC5L 5'UTR 0.05 TCGA-A2-A3Y0-01 6 75833729 75833729 C A COL12A1 Missense_Mutation p.G2269V 0.28 benign(0.261) TCGA-A2-A3Y0-01 7 100201566 100201566 C G PCOLCE Intron 0.24 TCGA-A2-A3Y0-01 7 100470343 100470343 C T TRIP6 Missense_Mutation p.H426Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-A2-A3Y0-01 7 100895254 100895254 G A FIS1 5'UTR 0.25 TCGA-A2-A3Y0-01 7 102114810 102114810 G A POLR2J Missense_Mutation p.R106W 0.08 deleterious(0) possibly_damaging(0.677) TCGA-A2-A3Y0-01 7 120989797 120989797 A G FAM3C 3'UTR 0.44 TCGA-A2-A3Y0-01 7 122342506 122342506 G T RNF148 Nonsense_Mutation p.S100* 0.12 TCGA-A2-A3Y0-01 7 138601731 138601731 T C KIAA1549 Missense_Mutation p.T881A 0.23 tolerated(0.29) benign(0.004) TCGA-A2-A3Y0-01 7 142139389 142139389 A G TRBV7-6 Missense_Mutation p.L79P 0.51 deleterious(0) possibly_damaging(0.789) TCGA-A2-A3Y0-01 7 143826250 143826250 A T OR2A14 Silent p.R15R 0.20 TCGA-A2-A3Y0-01 7 27236589 27236589 A T HOXA13 3'UTR 0.13 TCGA-A2-A3Y0-01 7 2748833 2748833 C A AMZ1 Silent p.G242G 0.33 TCGA-A2-A3Y0-01 7 48313044 48313044 G T ABCA13 Nonsense_Mutation p.E1261* 0.14 TCGA-A2-A3Y0-01 7 76909802 76909802 T C CCDC146 Missense_Mutation p.M584T 0.33 deleterious(0) benign(0.016) TCGA-A2-A3Y0-01 8 104419955 104419955 G T SLC25A32 Missense_Mutation p.T71N 0.30 tolerated(0.06) benign(0.021) TCGA-A2-A3Y0-01 8 119123320 119123320 C A EXT1 5'UTR 0.16 TCGA-A2-A3Y0-01 8 121379445 121379445 G T COL14A1 Missense_Mutation p.G1705C 0.38 deleterious(0) probably_damaging(1) TCGA-A2-A3Y0-01 8 13424528 13424528 A G C8orf48 Missense_Mutation p.T10A 0.33 tolerated_low_confidence(0.51) benign(0.002) TCGA-A2-A3Y0-01 8 144696807 144696807 C G TSTA3 Missense_Mutation p.D151H 0.10 deleterious(0) probably_damaging(0.997) TCGA-A2-A3Y0-01 8 144803948 144803948 G A MAPK15 Silent p.A452A 0.16 TCGA-A2-A3Y0-01 8 41511690 41511690 C T ANK1 3'Flank 0.11 TCGA-A2-A3Y0-01 8 57358343 57358343 G A PENK Intron 0.25 TCGA-A2-A3Y0-01 8 67547063 67547063 A C VCPIP1 Silent p.S1114S 0.40 TCGA-A2-A3Y0-01 8 70571438 70571438 G C SULF1 3'UTR 0.27 TCGA-A2-A3Y0-01 9 100235835 100235835 G T TDRD7 Missense_Mutation p.C669F 0.54 deleterious(0) probably_damaging(0.998) TCGA-A2-A3Y0-01 9 114985733 114985733 A G PTBP3 3'UTR 0.54 TCGA-A2-A3Y0-01 9 130883327 130883327 C T PTGES2 3'UTR 0.18 TCGA-A2-A3Y0-01 9 34125207 34125207 G A DCAF12 Silent p.Y49Y 0.41 TCGA-A2-A3Y0-01 9 34557603 34557603 G C CNTFR Missense_Mutation p.I175M 0.06 tolerated_low_confidence(0.25) benign(0.135) TCGA-A2-A3Y0-01 9 35044014 35044014 G C C9orf131 Missense_Mutation p.W463S 0.21 tolerated(0.58) benign(0.387) TCGA-A2-A3Y0-01 9 35700198 35700198 C T TLN1 Missense_Mutation p.R2217Q 0.24 tolerated(0.59) benign(0.017) TCGA-A2-A3Y0-01 9 77300499 77300499 C T RORB Missense_Mutation p.L449F 0.07 deleterious(0) probably_damaging(0.998) TCGA-A2-A3Y0-01 9 95072450 95072450 T A NOL8 Intron 0.36 TCGA-A2-A3Y0-01 X 107420161 107420161 C G COL4A6 Missense_Mutation p.G867R 0.13 probably_damaging(1) TCGA-A2-A3Y0-01 X 112020000 112020000 G C AMOT 3'UTR 0.27 TCGA-A2-A3Y0-01 X 114879343 114879343 G A PLS3 Missense_Mutation p.E396K 0.25 deleterious(0) probably_damaging(0.995) TCGA-A2-A3Y0-01 X 13795518 13795518 C T GPM6B Missense_Mutation p.G242R 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-A2-A3Y0-01 X 148798081 148798081 C G MAGEA11 Missense_Mutation p.S312C 0.23 deleterious(0) probably_damaging(0.962) TCGA-A2-A3Y0-01 X 149631069 149631069 A T MAMLD1 Intron 0.38 TCGA-A2-A3Y0-01 X 153693508 153693508 C T PLXNA3 Missense_Mutation p.R731W 0.20 deleterious(0.01) possibly_damaging(0.847) TCGA-A2-A3Y0-01 X 47432351 47432351 G T SYN1 Missense_Mutation p.P677Q 0.25 tolerated(0.47) benign(0.218) TCGA-A2-A3Y0-01 X 47485563 47485563 C A CFP Nonsense_Mutation p.G380* 0.20 TCGA-A2-A3Y0-01 X 48458724 48458724 G A WDR13 Missense_Mutation p.A181T 0.22 deleterious(0) probably_damaging(0.997) TCGA-A2-A3Y0-01 X 50053904 50053904 A C CCNB3 Missense_Mutation p.K912T 0.38 tolerated(0.07) benign(0.032) TCGA-A2-A3Y0-01 X 57458464 57458464 T C FAAH2 Silent p.D370D 0.23 TCGA-A2-A4S1-01 10 46999522 46999522 G A GPRIN2 Silent p.E214E 0.14 TCGA-A2-A4S1-01 10 73377107 73377107 G C CDH23 Missense_Mutation p.G364A 0.15 deleterious(0.02) probably_damaging(1) TCGA-A2-A4S1-01 10 96522609 96522609 T A CYP2C19 Missense_Mutation p.D49E 0.20 tolerated(0.08) benign(0.01) TCGA-A2-A4S1-01 11 100849780 100849780 G A ARHGAP42 Missense_Mutation p.R819H 0.12 deleterious(0) probably_damaging(0.994) TCGA-A2-A4S1-01 11 100863256 100863256 C A TMEM133 Missense_Mutation p.L73M 0.09 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-A2-A4S1-01 11 10327891 10327891 C G ADM Silent p.A87A 0.13 TCGA-A2-A4S1-01 11 134129550 134129550 C T ACAD8 Nonsense_Mutation p.R206* 0.17 TCGA-A2-A4S1-01 11 27390453 27390453 G A LGR4 Missense_Mutation p.A606V 0.15 deleterious(0) probably_damaging(0.931) TCGA-A2-A4S1-01 11 36511783 36511783 G A TRAF6 Missense_Mutation p.R392C 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A4S1-01 11 4406636 4406636 C G TRIM21 Missense_Mutation p.C436S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A4S1-01 11 48328495 48328502 CACGTAAT - OR4S1 Frame_Shift_Del p.V242Cfs*22 0.24 TCGA-A2-A4S1-01 11 56344916 56344916 G A OR5M10 Silent p.Y94Y 0.37 TCGA-A2-A4S1-01 11 94219175 94219175 C T MRE11A Missense_Mutation p.E77K 0.16 tolerated(0.37) benign(0.026) TCGA-A2-A4S1-01 12 113909155 113909155 A - LHX5 Frame_Shift_Del p.L50Pfs*71 0.16 TCGA-A2-A4S1-01 12 124816871 124816871 C A NCOR2 Nonsense_Mutation p.E2300* 0.17 TCGA-A2-A4S1-01 12 129569157 129569157 T C TMEM132D Missense_Mutation p.S512G 0.11 deleterious(0.04) benign(0.343) TCGA-A2-A4S1-01 12 133418098 133418098 C A CHFR 3'UTR 0.38 TCGA-A2-A4S1-01 12 52647411 52647411 C G KRT7 3'Flank 0.18 TCGA-A2-A4S1-01 12 72091146 72091146 G - TMEM19 Frame_Shift_Del p.E158Kfs*39 0.23 TCGA-A2-A4S1-01 13 107210040 107210040 A T ARGLU1 Intron 0.40 TCGA-A2-A4S1-01 14 106845422 106845422 C G IGHV3-35 Missense_Mutation p.K84N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.635) TCGA-A2-A4S1-01 14 77762553 77762553 G A POMT2 Missense_Mutation p.S357F 0.22 deleterious(0) probably_damaging(1) TCGA-A2-A4S1-01 14 92264128 92264128 C A TC2N Splice_Site p.X285_splice 0.12 TCGA-A2-A4S1-01 15 43772084 43772084 T A TP53BP1 Missense_Mutation p.R211W 0.23 deleterious(0.01) possibly_damaging(0.649) TCGA-A2-A4S1-01 15 75042173 75042173 A G CYP1A2 Missense_Mutation p.R32G 0.10 tolerated(0.21) benign(0.197) TCGA-A2-A4S1-01 16 1034797 1034797 C T SOX8 Missense_Mutation p.P251L 0.16 tolerated(0.42) benign(0) TCGA-A2-A4S1-01 16 19080009 19080009 T A COQ7 Intron 0.57 TCGA-A2-A4S1-01 16 21817530 21817530 T C RRN3P1 RNA 0.42 TCGA-A2-A4S1-01 16 28403144 28403144 C G EIF3CL Missense_Mutation p.E324D 0.08 tolerated(0.1) benign(0.394) TCGA-A2-A4S1-01 16 421915 421915 C A TMEM8A 3'UTR 0.17 TCGA-A2-A4S1-01 16 57003847 57003847 G A CETP Missense_Mutation p.R154Q 0.47 tolerated(0.37) benign(0.006) TCGA-A2-A4S1-01 16 7761600 7761600 T - RBFOX1 3'UTR 0.09 TCGA-A2-A4S1-01 16 8948829 8948829 G A CARHSP1 3'UTR 0.20 TCGA-A2-A4S1-01 17 28022491 28022491 C A SSH2 Missense_Mutation p.D88Y 0.34 deleterious(0) probably_damaging(0.98) TCGA-A2-A4S1-01 17 29685617 29685623 AATACCA - NF1 Frame_Shift_Del p.Y2698Hfs*39 0.43 TCGA-A2-A4S1-01 17 54428239 54428239 T G ANKFN1 Missense_Mutation p.S104A 0.35 deleterious(0) probably_damaging(0.956) TCGA-A2-A4S1-01 17 7577098 7577098 T G TP53 Missense_Mutation p.R280S 0.45 deleterious(0.03) possibly_damaging(0.646) TCGA-A2-A4S1-01 18 14850235 14850235 G T ANKRD30B Nonsense_Mutation p.E1021* 0.14 TCGA-A2-A4S1-01 18 14850242 14850242 G T ANKRD30B Missense_Mutation p.R1023I 0.14 deleterious(0) probably_damaging(0.975) TCGA-A2-A4S1-01 19 17448867 17448867 C A GTPBP3 Missense_Mutation p.T35N 0.30 deleterious(0) probably_damaging(0.995) TCGA-A2-A4S1-01 19 1978887 1978887 G A CSNK1G2 Silent p.K159K 0.19 TCGA-A2-A4S1-01 19 2097305 2097305 T G IZUMO4 Missense_Mutation p.L91R 0.27 deleterious(0) probably_damaging(0.991) TCGA-A2-A4S1-01 19 38911597 38911597 T G RASGRP4 Missense_Mutation p.T110P 0.12 tolerated(0.43) benign(0.16) TCGA-A2-A4S1-01 19 56565030 56565030 C T NLRP5 Missense_Mutation p.A1052V 0.55 tolerated(0.11) benign(0.078) TCGA-A2-A4S1-01 1 107963767 107963767 T C NTNG1 Intron 0.11 TCGA-A2-A4S1-01 1 108231091 108231091 A T VAV3 Intron 0.10 TCGA-A2-A4S1-01 1 159159644 159159644 G T CADM3 Missense_Mutation p.D58Y 0.18 deleterious(0) probably_damaging(0.934) TCGA-A2-A4S1-01 1 186160018 186160018 T C HMCN1 3'UTR 0.19 TCGA-A2-A4S1-01 1 225492634 225492634 A G DNAH14 Missense_Mutation p.T2204A 0.29 tolerated(0.23) benign(0.262) TCGA-A2-A4S1-01 1 237058733 237058733 G A MTR Missense_Mutation p.A1161T 0.10 tolerated(0.1) benign(0.001) TCGA-A2-A4S1-01 1 41107465 41107465 G A RIMS3 Missense_Mutation p.R45W 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-A2-A4S1-01 1 7826912 7826912 G T CAMTA1 3'UTR 0.18 TCGA-A2-A4S1-01 21 28210246 28210246 G C ADAMTS1 Missense_Mutation p.I852M 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A4S1-01 21 33765572 33765572 C T C21orf119 Missense_Mutation p.A14V 0.36 possibly_damaging(0.691) TCGA-A2-A4S1-01 22 28315170 28315170 T A PITPNB Missense_Mutation p.I4F 0.45 deleterious(0) benign(0.011) TCGA-A2-A4S1-01 22 41574816 41574816 G A EP300 Silent p.P2367P 0.52 TCGA-A2-A4S1-01 2 11725303 11725303 C A GREB1 Silent p.S306S 0.27 TCGA-A2-A4S1-01 2 130737638 130737638 C G RAB6C 5'UTR 0.14 TCGA-A2-A4S1-01 2 141773300 141773300 T A LRP1B Missense_Mutation p.I719F 0.26 benign(0.227) TCGA-A2-A4S1-01 2 160983046 160983046 C A ITGB6 Missense_Mutation p.C576F 0.21 deleterious(0) probably_damaging(0.985) TCGA-A2-A4S1-01 2 206981103 206981103 A G AC007383.4 RNA 0.50 TCGA-A2-A4S1-01 2 55118197 55118198 - A EML6 Frame_Shift_Ins p.D817Rfs*2 0.21 TCGA-A2-A4S1-01 2 69554198 69554198 C A GFPT1 Missense_Mutation p.V635L 0.24 tolerated(0.09) benign(0.013) TCGA-A2-A4S1-01 2 72692351 72692351 C T EXOC6B Missense_Mutation p.D640N 0.19 tolerated(0.2) probably_damaging(0.998) TCGA-A2-A4S1-01 3 108626879 108626879 T C GUCA1C Missense_Mutation p.K207R 0.36 deleterious_low_confidence(0.03) benign(0.011) TCGA-A2-A4S1-01 3 138219342 138219342 A T CEP70 Missense_Mutation p.V479E 0.38 deleterious(0) probably_damaging(0.992) TCGA-A2-A4S1-01 3 142131500 142131500 C T XRN1 Silent p.L533L 0.18 TCGA-A2-A4S1-01 3 29938890 29938890 G C RBMS3 Missense_Mutation p.S271T 0.27 tolerated(0.06) benign(0.311) TCGA-A2-A4S1-01 3 62355985 62355985 C G FEZF2 Missense_Mutation p.G385R 0.17 deleterious(0) possibly_damaging(0.65) TCGA-A2-A4S1-01 3 67060603 67060603 G T KBTBD8 3'UTR 0.26 TCGA-A2-A4S1-01 3 9482144 9482144 C G SETD5 Missense_Mutation p.S191C 0.38 deleterious(0) probably_damaging(0.998) TCGA-A2-A4S1-01 4 186066173 186066173 G A SLC25A4 Missense_Mutation p.A123T 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-A2-A4S1-01 4 20530616 20530616 G T SLIT2 Missense_Mutation p.D503Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-A2-A4S1-01 4 55976929 55976929 G T KDR Missense_Mutation p.P328H 0.30 deleterious(0) probably_damaging(0.992) TCGA-A2-A4S1-01 4 55981116 55981116 C A KDR Missense_Mutation p.A195S 0.18 tolerated(0.11) probably_damaging(0.933) TCGA-A2-A4S1-01 4 99399882 99399882 C A TSPAN5 Missense_Mutation p.R177L 0.33 deleterious(0.03) possibly_damaging(0.905) TCGA-A2-A4S1-01 5 118176659 118176659 G A DTWD2 Missense_Mutation p.R284C 0.09 deleterious(0) possibly_damaging(0.863) TCGA-A2-A4S1-01 5 42719866 42719866 A C GHR 3'UTR 0.32 TCGA-A2-A4S1-01 5 72848260 72848260 T G ANKRA2 3'UTR 0.18 TCGA-A2-A4S1-01 5 73190346 73190346 G A ARHGEF28 Missense_Mutation p.D1263N 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-A2-A4S1-01 6 117215213 117215213 A G RFX6 Silent p.G210G 0.06 TCGA-A2-A4S1-01 6 33130533 33130533 G A COL11A2 3'UTR 0.30 TCGA-A2-A4S1-01 6 71012743 71012743 C A COL9A1 5'UTR 0.34 TCGA-A2-A4S1-01 7 129592448 129592448 G A UBE2H 5'UTR 0.29 TCGA-A2-A4S1-01 7 22767176 22767176 C A IL6 Missense_Mutation p.Q45K 0.29 tolerated(1) benign(0.006) TCGA-A2-A4S1-01 7 50135957 50135957 T A C7orf72 Nonsense_Mutation p.Y92* 0.29 TCGA-A2-A4S1-01 7 64167462 64167462 T C ZNF107 Silent p.T260T 0.29 TCGA-A2-A4S1-01 7 72657755 72657755 G A GTF2IRD2P1 RNA 0.28 TCGA-A2-A4S1-01 7 88423580 88423580 G A C7orf62 Missense_Mutation p.P226L 0.27 deleterious(0) probably_damaging(0.916) TCGA-A2-A4S1-01 8 125072506 125072506 C T FER1L6 Missense_Mutation p.P987L 0.17 deleterious(0) probably_damaging(1) TCGA-A2-A4S1-01 8 42823321 42823321 C G HOOK3 Missense_Mutation p.N362K 0.43 deleterious(0.03) possibly_damaging(0.482) TCGA-A2-A4S1-01 8 42823322 42823322 G A HOOK3 Missense_Mutation p.A363T 0.43 tolerated(0.15) benign(0.05) TCGA-A2-A4S1-01 9 103791238 103791238 C G LPPR1 5'UTR 0.27 TCGA-A2-A4S1-01 9 133967273 133967273 G C LAMC3 3'UTR 0.50 TCGA-A2-A4S1-01 9 74562026 74562026 G C C9orf85 Missense_Mutation p.K69N 0.30 deleterious(0) probably_damaging(0.987) TCGA-A2-A4S1-01 9 84609127 84609127 G C SPATA31D1 Missense_Mutation p.D1248H 0.46 tolerated(0.11) benign(0.409) TCGA-A2-A4S1-01 X 130409477 130409477 G T IGSF1 Missense_Mutation p.S1058R 0.16 deleterious(0) probably_damaging(0.999) TCGA-A2-A4S1-01 X 41530686 41530686 G C CASK Missense_Mutation p.A176G 0.27 tolerated(0.25) benign(0.015) TCGA-A2-A4S1-01 X 44386524 44386524 C A FUNDC1 Missense_Mutation p.A117S 0.31 tolerated(0.56) benign(0.181) TCGA-A2-A4S1-01 X 47327120 47327120 T C ZNF41 5'UTR 0.38 TCGA-A2-A4S1-01 X 51644929 51644929 C T MAGED1 Missense_Mutation p.P803L 0.32 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-A2-A4S1-01 X 52673570 52673570 C T SSX7 3'UTR 0.26 TCGA-A2-A4S1-01 X 54471938 54471938 C A FGD1 3'UTR 0.38 TCGA-A2-A4S1-01 X 91456404 91456404 C A PCDH11X Missense_Mutation p.P1022T 0.12 deleterious(0.04) benign(0.254) TCGA-A2-A4S2-01 11 118779095 118779095 G A BCL9L Missense_Mutation p.A99V 0.16 possibly_damaging(0.739) TCGA-A2-A4S2-01 11 62294600 62294600 T G AHNAK Missense_Mutation p.E2430A 0.27 probably_damaging(0.937) TCGA-A2-A4S2-01 11 66466533 66466533 G T SPTBN2 Missense_Mutation p.A1266E 0.37 tolerated(0.45) benign(0.336) TCGA-A2-A4S2-01 12 115118792 115118793 - CT TBX3 Frame_Shift_Ins p.M184Gfs*25 0.25 TCGA-A2-A4S2-01 12 6710219 6710219 C A CHD4 Missense_Mutation p.G267V 0.34 deleterious(0.02) probably_damaging(0.972) TCGA-A2-A4S2-01 12 7559399 7559399 C T CD163L1 Missense_Mutation p.M272I 0.19 tolerated(0.22) benign(0) TCGA-A2-A4S2-01 14 24884073 24884073 C T NYNRIN Missense_Mutation p.R1040W 0.29 tolerated_low_confidence(0.07) benign(0.006) TCGA-A2-A4S2-01 14 39623467 39623467 C T TRAPPC6B Missense_Mutation p.R100H 0.19 tolerated(0.07) possibly_damaging(0.51) TCGA-A2-A4S2-01 15 44854016 44854016 A G EIF3J 3'UTR 0.27 TCGA-A2-A4S2-01 16 23647523 23647523 C T PALB2 Missense_Mutation p.G115E 0.15 tolerated(1) benign(0.005) TCGA-A2-A4S2-01 16 68867258 68867258 T A CDH1 Nonsense_Mutation p.Y835* 0.48 TCGA-A2-A4S2-01 17 38063216 38063216 A G GSDMB Missense_Mutation p.L242S 0.21 tolerated(0.16) benign(0.099) TCGA-A2-A4S2-01 19 16136382 16136382 C A LINC00661 RNA 0.18 TCGA-A2-A4S2-01 19 17062885 17062885 G T CPAMD8 Missense_Mutation p.T848N 0.23 deleterious(0.01) possibly_damaging(0.907) TCGA-A2-A4S2-01 19 46333417 46333417 G A SYMPK Silent p.D548D 0.22 TCGA-A2-A4S2-01 19 57640903 57640903 T C USP29 Missense_Mutation p.F287S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A4S2-01 1 152283148 152283148 G T FLG Nonsense_Mutation p.S1405* 0.15 TCGA-A2-A4S2-01 1 154956253 154956253 G C FLAD1 Missense_Mutation p.R28T 0.19 benign(0.227) TCGA-A2-A4S2-01 1 155233769 155233769 T C CLK2 Missense_Mutation p.Y429C 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-A2-A4S2-01 1 182353775 182353775 T C GLUL Missense_Mutation p.N296S 0.12 deleterious(0.01) possibly_damaging(0.733) TCGA-A2-A4S2-01 1 234742826 234742826 A G IRF2BP2 3'UTR 0.45 TCGA-A2-A4S2-01 1 234742869 234742869 T G IRF2BP2 3'UTR 0.44 TCGA-A2-A4S2-01 1 33160553 33160553 G A SYNC Silent p.A382A 0.16 TCGA-A2-A4S2-01 20 43029941 43029941 G A HNF4A 5'UTR 0.38 TCGA-A2-A4S2-01 20 43353470 43353470 C T WISP2 Silent p.C123C 0.26 TCGA-A2-A4S2-01 21 46077890 46077890 C T KRTAP12-3 5'UTR 0.22 TCGA-A2-A4S2-01 2 119735465 119735465 A G MARCO Silent p.K240K 0.29 TCGA-A2-A4S2-01 2 25366673 25366673 G A EFR3B Silent p.L664L 0.25 TCGA-A2-A4S2-01 3 124463000 124463000 T C UMPS 3'UTR 0.21 TCGA-A2-A4S2-01 3 15736712 15736712 C T ANKRD28 Missense_Mutation p.E527K 0.11 tolerated(0.61) benign(0.005) TCGA-A2-A4S2-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-A2-A4S2-01 3 195594765 195594765 G A TNK2 Nonsense_Mutation p.Q865* 0.16 TCGA-A2-A4S2-01 4 42965092 42965092 C T GRXCR1 Nonsense_Mutation p.R190* 0.30 TCGA-A2-A4S2-01 5 140474744 140474744 C T PCDHB2 Missense_Mutation p.R124W 0.11 tolerated_low_confidence(0.19) benign(0.002) TCGA-A2-A4S2-01 6 46108830 46108830 C T ENPP4 Missense_Mutation p.H290Y 0.27 deleterious(0) benign(0.072) TCGA-A2-A4S2-01 7 102574414 102574414 G A LRRC17 Silent p.L18L 0.21 TCGA-A2-A4S2-01 7 72850306 72850306 G T FZD9 3'UTR 0.25 TCGA-A2-A4S2-01 8 86157976 86157976 G A CA13 5'UTR 0.22 TCGA-A2-A4S2-01 8 9627729 9627729 A G TNKS Missense_Mutation p.N1285S 0.39 deleterious(0.02) possibly_damaging(0.804) TCGA-A2-A4S2-01 X 100646803 100646803 G A RPL36A-HNRNPH2 Missense_Mutation p.R68Q 0.16 tolerated_low_confidence(0.34) benign(0.022) TCGA-A2-A4S2-01 X 106956710 106956718 AAACAAAAC - TSC22D3 3'UTR 0.23 TCGA-A2-A4S2-01 X 114142230 114142233 CTCC - HTR2C 3'UTR 0.18 TCGA-A2-A4S2-01 X 151093230 151093230 A C MAGEA4 3'UTR 0.25 TCGA-A2-A4S2-01 X 34149179 34149179 G T FAM47A Missense_Mutation p.T406N 0.28 deleterious(0.03) benign(0.334) TCGA-A2-A4S2-01 X 3592644 3592644 G A PRKX Silent p.I110I 0.26 TCGA-A2-A4S2-01 X 9687466 9687466 A G TBL1X 3'UTR 0.29 TCGA-A2-A4S3-01 10 124672467 124672467 C A FAM24A Silent p.L105L 0.31 TCGA-A2-A4S3-01 10 27702439 27702454 GCTTCCCTTTTCCCGC - PTCHD3 Frame_Shift_Del p.E244Sfs*26 0.33 TCGA-A2-A4S3-01 10 81915536 81915536 C G ANXA11 3'UTR 0.23 TCGA-A2-A4S3-01 11 118404580 118404580 C A TMEM25 Silent p.R272R 0.45 TCGA-A2-A4S3-01 11 132306630 132306630 G T OPCML Silent p.V236V 0.14 TCGA-A2-A4S3-01 11 4675733 4675733 G T OR51E1 3'UTR 0.24 TCGA-A2-A4S3-01 11 47192975 47192985 ACCTTCGGGAT - ARFGAP2 Splice_Site p.X311_splice 0.19 TCGA-A2-A4S3-01 11 61537881 61537881 G A MYRF Silent p.K208K 0.31 TCGA-A2-A4S3-01 11 64621685 64621685 C T EHD1 3'UTR 0.34 TCGA-A2-A4S3-01 11 77702273 77702273 G A INTS4 Silent p.L43L 0.05 TCGA-A2-A4S3-01 12 107371522 107371522 T A MTERFD3 Missense_Mutation p.E324V 0.30 deleterious(0) probably_damaging(0.928) TCGA-A2-A4S3-01 12 68696589 68696589 G A MDM1 Silent p.L595L 0.36 TCGA-A2-A4S3-01 13 115091669 115091669 A C CHAMP1 Missense_Mutation p.L784F 0.31 deleterious(0) probably_damaging(0.999) TCGA-A2-A4S3-01 13 20283700 20283700 C A PSPC1 Nonsense_Mutation p.G400* 0.38 TCGA-A2-A4S3-01 14 51561358 51561358 G A TRIM9 Silent p.R100R 0.29 TCGA-A2-A4S3-01 14 73137369 73137370 - A DPF3 3'UTR 0.65 TCGA-A2-A4S3-01 14 93107614 93107614 C A RIN3 Missense_Mutation p.Q158K 0.44 deleterious(0.01) unknown(0) TCGA-A2-A4S3-01 15 102252196 102252201 CCAGTA - TARSL2 In_Frame_Del p.Y232_W233del 0.59 TCGA-A2-A4S3-01 15 35198909 35198909 A G AQR Silent p.L556L 0.43 TCGA-A2-A4S3-01 15 40380390 40380390 G A BMF 3'UTR 0.28 TCGA-A2-A4S3-01 15 52659300 52659300 C T MYO5A Missense_Mutation p.E1030K 0.40 tolerated(0.15) benign(0.002) TCGA-A2-A4S3-01 16 23457182 23457182 G T COG7 Silent p.V90V 0.25 TCGA-A2-A4S3-01 16 24196452 24196452 T C PRKCB Silent p.Y518Y 0.28 TCGA-A2-A4S3-01 16 28948386 28948386 C G CD19 Missense_Mutation p.P376R 0.39 tolerated(0.4) benign(0.013) TCGA-A2-A4S3-01 16 30005877 30005877 C T HIRIP3 Missense_Mutation p.E197K 0.28 deleterious(0.02) possibly_damaging(0.842) TCGA-A2-A4S3-01 16 69150360 69150360 C G HAS3 3'UTR 0.44 TCGA-A2-A4S3-01 17 38172764 38172764 C G CSF3 Missense_Mutation p.S113R 0.55 tolerated(0.42) benign(0.068) TCGA-A2-A4S3-01 17 39616421 39616421 C T KRT32 Missense_Mutation p.V430I 0.09 tolerated(0.76) benign(0.001) TCGA-A2-A4S3-01 17 60021629 60021629 G A MED13 3'UTR 0.31 TCGA-A2-A4S3-01 17 6503709 6503709 G C KIAA0753 Silent p.V693V 0.27 TCGA-A2-A4S3-01 17 7255999 7255999 A C KCTD11 5'UTR 0.28 TCGA-A2-A4S3-01 17 7578536 7578536 T C TP53 Missense_Mutation p.K132E 0.36 deleterious(0) probably_damaging(1) TCGA-A2-A4S3-01 17 79079916 79079916 A T BAIAP2 Missense_Mutation p.D436V 0.20 deleterious(0.05) benign(0.231) TCGA-A2-A4S3-01 18 57570528 57570528 G A PMAIP1 3'UTR 0.10 TCGA-A2-A4S3-01 18 7013948 7013948 A C LAMA1 Missense_Mutation p.C1077G 0.19 deleterious(0) probably_damaging(1) TCGA-A2-A4S3-01 19 11507967 11507967 G A RGL3 Missense_Mutation p.P662L 0.20 deleterious(0.03) unknown(0) TCGA-A2-A4S3-01 19 14991371 14991371 T C OR7A17 Missense_Mutation p.H266R 0.26 tolerated_low_confidence(0.07) benign(0.022) TCGA-A2-A4S3-01 19 35613803 35613803 A G FXYD3 Intron 0.29 TCGA-A2-A4S3-01 19 40541521 40541521 T A ZNF780B Missense_Mutation p.K415N 0.06 deleterious(0) possibly_damaging(0.544) TCGA-A2-A4S3-01 19 55870843 55870843 C T FAM71E2 Missense_Mutation p.V465I 0.27 tolerated(0.16) benign(0.018) TCGA-A2-A4S3-01 1 116382859 116382859 T C NHLH2 5'UTR 0.20 TCGA-A2-A4S3-01 1 116931552 116931552 C G ATP1A1 Nonsense_Mutation p.S222* 0.32 TCGA-A2-A4S3-01 1 117504034 117504034 C T PTGFRN Silent p.S461S 0.25 TCGA-A2-A4S3-01 1 154680665 154680665 C T KCNN3 Silent p.S661S 0.35 TCGA-A2-A4S3-01 1 160261648 160261648 C T COPA Silent p.L1082L 0.23 TCGA-A2-A4S3-01 1 173878701 173878701 G C SERPINC1 Missense_Mutation p.S381C 0.13 deleterious(0) benign(0.018) TCGA-A2-A4S3-01 1 202158370 202158370 C G LGR6 5'Flank 0.32 TCGA-A2-A4S3-01 1 232944315 232944315 G A MAP10 3'UTR 0.18 TCGA-A2-A4S3-01 1 245912838 245912838 G A SMYD3 3'Flank 0.19 TCGA-A2-A4S3-01 1 2939260 2939260 G A ACTRT2 Missense_Mutation p.R337Q 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-A2-A4S3-01 1 46977811 46977811 G A DMBX1 Missense_Mutation p.R260H 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A2-A4S3-01 1 46977813 46977813 C T DMBX1 Silent p.L261L 0.48 TCGA-A2-A4S3-01 1 8385447 8385447 A G SLC45A1 Missense_Mutation p.I163V 0.48 tolerated(0.37) benign(0.026) TCGA-A2-A4S3-01 1 92789425 92789425 A T RPAP2 Missense_Mutation p.E316D 0.36 tolerated(0.16) benign(0.01) TCGA-A2-A4S3-01 1 92789442 92789442 C T RPAP2 Missense_Mutation p.S322L 0.33 tolerated(0.09) possibly_damaging(0.848) TCGA-A2-A4S3-01 20 25274842 25274842 C T PYGB Silent p.A742A 0.31 TCGA-A2-A4S3-01 20 4202658 4202658 G A ADRA1D Missense_Mutation p.R411C 0.19 deleterious(0) probably_damaging(0.998) TCGA-A2-A4S3-01 20 43029929 43029929 G T HNF4A 5'UTR 0.39 TCGA-A2-A4S3-01 20 48524761 48524761 G A SPATA2 Silent p.F89F 0.22 TCGA-A2-A4S3-01 20 62195420 62195420 G A HELZ2 Silent p.H1585H 0.26 TCGA-A2-A4S3-01 21 30446001 30446001 G T CCT8 5'UTR 0.23 TCGA-A2-A4S3-01 22 29724187 29724187 G A AP1B1 3'UTR 0.15 TCGA-A2-A4S3-01 22 42540319 42540319 A C RP4-669P10.16 5'Flank 0.41 TCGA-A2-A4S3-01 22 45128248 45128248 G T PRR5 Missense_Mutation p.V201L 0.34 tolerated(0.07) benign(0.313) TCGA-A2-A4S3-01 2 103013176 103013176 C A IL18R1 Missense_Mutation p.P486T 0.33 deleterious(0) probably_damaging(0.998) TCGA-A2-A4S3-01 2 116601614 116601614 G A DPP10 3'Flank 0.28 TCGA-A2-A4S3-01 2 170470979 170470979 C G PPIG Missense_Mutation p.T128R 0.13 deleterious(0) probably_damaging(1) TCGA-A2-A4S3-01 2 17836578 17836578 C G VSNL1 Missense_Mutation p.Q165E 0.12 tolerated(0.23) benign(0.003) TCGA-A2-A4S3-01 2 185800789 185800789 G A ZNF804A Silent p.A222A 0.48 TCGA-A2-A4S3-01 2 207026111 207026111 C T EEF1B2 Missense_Mutation p.A82V 0.18 tolerated(0.1) benign(0.065) TCGA-A2-A4S3-01 2 72802668 72802668 G A EXOC6B Nonsense_Mutation p.Q267* 0.37 TCGA-A2-A4S3-01 3 194118419 194118419 C G GP5 Missense_Mutation p.R198T 0.31 tolerated(0.08) benign(0.006) TCGA-A2-A4S3-01 3 25638374 25638374 C G RARB 3'UTR 0.28 TCGA-A2-A4S3-01 3 33416911 33416911 G T FBXL2 Splice_Site p.X263_splice 0.44 TCGA-A2-A4S3-01 3 38531078 38531078 T A ACVR2B 3'UTR 0.48 TCGA-A2-A4S3-01 3 43074558 43074558 T G FAM198A Missense_Mutation p.M268R 0.54 tolerated(0.58) benign(0.002) TCGA-A2-A4S3-01 3 44612064 44612064 A G ZKSCAN7 Missense_Mutation p.T488A 0.33 tolerated(0.42) benign(0.001) TCGA-A2-A4S3-01 3 4836817 4836817 G A ITPR1 Missense_Mutation p.V2278I 0.22 tolerated(0.13) benign(0.223) TCGA-A2-A4S3-01 4 11401364 11401364 A T HS3ST1 Missense_Mutation p.F89Y 0.14 tolerated(0.08) possibly_damaging(0.45) TCGA-A2-A4S3-01 4 155219402 155219402 C T DCHS2 Missense_Mutation p.V1567I 0.29 deleterious(0.04) benign(0.284) TCGA-A2-A4S3-01 4 155665479 155665479 A G LRAT Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-A2-A4S3-01 4 25664351 25664351 C T SLC34A2 Missense_Mutation p.T46I 0.31 tolerated(0.06) benign(0.14) TCGA-A2-A4S3-01 4 43032455 43032455 G T GRXCR1 Missense_Mutation p.K257N 0.26 deleterious(0) probably_damaging(0.995) TCGA-A2-A4S3-01 5 180166248 180166248 T C OR2Y1 Missense_Mutation p.K271E 0.38 deleterious(0) probably_damaging(1) TCGA-A2-A4S3-01 5 79084846 79084846 G C CMYA5 Missense_Mutation p.D3870H 0.34 probably_damaging(0.959) TCGA-A2-A4S3-01 5 90666955 90666955 C G ARRDC3 3'UTR 0.41 TCGA-A2-A4S3-01 6 118588284 118588284 G A SLC35F1 Missense_Mutation p.A202T 0.27 deleterious(0.01) possibly_damaging(0.854) TCGA-A2-A4S3-01 6 149731006 149731006 A T TAB2 3'UTR 0.29 TCGA-A2-A4S3-01 6 26156885 26156885 C G HIST1H1E Missense_Mutation p.S89R 0.28 deleterious(0) possibly_damaging(0.857) TCGA-A2-A4S3-01 6 26376967 26376967 C A BTN3A2 3'UTR 0.17 TCGA-A2-A4S3-01 6 90566870 90566870 G T CASP8AP2 RNA 0.29 TCGA-A2-A4S3-01 7 27147487 27147487 A T HOXA3 3'UTR 0.27 TCGA-A2-A4S3-01 7 55223574 55223574 A G EGFR Missense_Mutation p.D314G 0.29 tolerated(0.26) possibly_damaging(0.671) TCGA-A2-A4S3-01 7 62809622 62809622 G A AC006455.1 5'UTR 0.17 TCGA-A2-A4S3-01 7 72416977 72416977 G A POM121 Intron 0.18 TCGA-A2-A4S3-01 7 99621076 99621076 G T ZKSCAN1 5'UTR 0.27 TCGA-A2-A4S3-01 8 107715274 107715274 G A OXR1 Missense_Mutation p.M273I 0.25 tolerated(0.12) benign(0.05) TCGA-A2-A4S3-01 8 28627466 28627466 G A INTS9 Silent p.V580V 0.51 TCGA-A2-A4S3-01 8 35651217 35651217 T C UNC5D 3'Flank 0.38 TCGA-A2-A4S3-01 8 38273484 38273484 G A FGFR1 Silent p.N617N 0.14 TCGA-A2-A4S3-01 9 100757043 100757043 A T ANP32B Missense_Mutation p.K62M 0.12 deleterious(0) possibly_damaging(0.903) TCGA-A2-A4S3-01 9 111849489 111849489 G A TMEM245 Silent p.V428V 0.58 TCGA-A2-A4S3-01 9 130578203 130578203 G T ENG Intron 0.19 TCGA-A2-A4S3-01 9 33112503 33112503 T C B4GALT1 3'UTR 0.22 TCGA-A2-A4S3-01 9 35870121 35870121 G A OR13J1 Missense_Mutation p.S93F 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-A2-A4S3-01 9 74674237 74674237 A G C9orf57 Missense_Mutation p.I26T 0.60 tolerated_low_confidence(0.32) benign(0.291) TCGA-A2-A4S3-01 9 90301529 90301529 T C DAPK1 Missense_Mutation p.M763T 0.32 tolerated(1) benign(0.346) TCGA-A2-A4S3-01 X 117527021 117527021 G A WDR44 Missense_Mutation p.A205T 0.61 tolerated_low_confidence(0.68) benign(0.001) TCGA-A2-A4S3-01 X 129190157 129190157 T C BCORL1 3'UTR 0.29 TCGA-A2-A4S3-01 X 129506981 129506981 C A SLC25A14 3'UTR 0.13 TCGA-A2-A4S3-01 X 13338110 13338110 A G ATXN3L 5'UTR 0.11 TCGA-A7-A0CE-01 10 102763582 102763582 C T LZTS2 Missense_Mutation p.P243S 0.68 tolerated(0.35) possibly_damaging(0.632) TCGA-A7-A0CE-01 10 99349536 99349536 G C C10orf62 5'UTR 0.46 TCGA-A7-A0CE-01 11 118533617 118533617 A T TREH Missense_Mutation p.H132Q 0.68 deleterious(0) possibly_damaging(0.812) TCGA-A7-A0CE-01 11 47186849 47186849 G T ARFGAP2 3'UTR 0.14 TCGA-A7-A0CE-01 11 56043581 56043581 T A OR5T1 Missense_Mutation p.L156H 0.33 deleterious(0) possibly_damaging(0.852) TCGA-A7-A0CE-01 11 57314020 57314020 C A SMTNL1 Missense_Mutation p.A430D 0.40 deleterious(0) probably_damaging(1) TCGA-A7-A0CE-01 11 68678969 68678969 G A IGHMBP2 Silent p.A203A 0.31 TCGA-A7-A0CE-01 12 102302031 102302031 C G DRAM1 Missense_Mutation p.T137R 0.27 deleterious(0.01) possibly_damaging(0.88) TCGA-A7-A0CE-01 12 109051186 109051186 G A CORO1C Missense_Mutation p.A215V 0.35 tolerated(0.11) benign(0.042) TCGA-A7-A0CE-01 12 18644449 18644449 T A PIK3C2G Missense_Mutation p.L876H 0.21 deleterious(0) probably_damaging(0.992) TCGA-A7-A0CE-01 12 2967894 2967894 G A FOXM1 Silent p.I772I 0.05 TCGA-A7-A0CE-01 12 6230395 6230395 T G VWF Silent p.G55G 0.15 TCGA-A7-A0CE-01 12 72366430 72366430 C G TPH2 Missense_Mutation p.T247S 0.02 tolerated(0.58) benign(0.001) TCGA-A7-A0CE-01 14 22783263 22783263 G C TRAV40 Missense_Mutation p.G77R 0.34 tolerated(0.6) benign(0.113) TCGA-A7-A0CE-01 15 43891108 43891108 T G CKMT1B Silent p.G365G 0.53 TCGA-A7-A0CE-01 15 90903831 90903831 C A ZNF774 Silent p.T256T 0.04 TCGA-A7-A0CE-01 16 31373464 31373464 T A ITGAX Missense_Mutation p.N385K 0.17 tolerated(0.57) benign(0.11) TCGA-A7-A0CE-01 16 89352043 89352043 C T ANKRD11 Missense_Mutation p.E303K 0.14 benign(0.074) TCGA-A7-A0CE-01 17 16335509 16335509 C A TRPV2 Silent p.A628A 0.18 TCGA-A7-A0CE-01 17 18673367 18673367 C T FBXW10 Missense_Mutation p.P659S 0.03 deleterious(0) possibly_damaging(0.798) TCGA-A7-A0CE-01 17 3954156 3954156 T C ZZEF1 Missense_Mutation p.T1928A 0.30 tolerated(0.65) benign(0) TCGA-A7-A0CE-01 17 56581186 56581186 C T MTMR4 Missense_Mutation p.C577Y 0.58 deleterious(0.01) possibly_damaging(0.781) TCGA-A7-A0CE-01 17 57941054 57941054 A C TUBD1 Silent p.V410V 0.04 TCGA-A7-A0CE-01 18 55143875 55143875 C T ONECUT2 Missense_Mutation p.R479C 0.26 deleterious(0) probably_damaging(1) TCGA-A7-A0CE-01 19 11918188 11918188 T G ZNF491 3'UTR 0.15 TCGA-A7-A0CE-01 19 14076329 14076329 C G RFX1 Missense_Mutation p.A715P 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-A7-A0CE-01 19 15730493 15730493 C T CYP4F8 RNA 0.27 TCGA-A7-A0CE-01 19 20748593 20748593 C A ZNF737 5'Flank 0.20 TCGA-A7-A0CE-01 19 31767507 31767507 G A TSHZ3 Silent p.H1064H 0.41 TCGA-A7-A0CE-01 19 39912877 39912877 C T PLEKHG2 Silent p.I542I 0.08 TCGA-A7-A0CE-01 19 40364356 40364356 G T FCGBP Silent p.P4762P 0.17 TCGA-A7-A0CE-01 19 41455037 41455037 C T AC092071.1 3'Flank 0.27 TCGA-A7-A0CE-01 19 42213656 42213656 C G CEA Missense_Mutation p.T41R 0.22 deleterious(0.04) benign(0.084) TCGA-A7-A0CE-01 19 4298081 4298081 C A TMIGD2 Missense_Mutation p.S103I 0.50 deleterious(0.01) possibly_damaging(0.518) TCGA-A7-A0CE-01 19 53453442 53453442 C T ZNF816 Missense_Mutation p.R529K 0.05 tolerated(0.22) benign(0.018) TCGA-A7-A0CE-01 19 55107753 55107753 A T LILRA1 Missense_Mutation p.H353L 0.33 deleterious(0) benign(0.271) TCGA-A7-A0CE-01 1 13719062 13719062 G T PRAMEF17 3'UTR 0.29 TCGA-A7-A0CE-01 1 152325015 152325015 A G FLG2 Silent p.H1749H 0.04 TCGA-A7-A0CE-01 1 20991082 20991082 G C KIF17 Missense_Mutation p.L1029V 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.471) TCGA-A7-A0CE-01 1 227198691 227198691 T C CDC42BPA Intron 0.29 TCGA-A7-A0CE-01 1 46206690 46206690 C A IPP Missense_Mutation p.A203S 0.15 tolerated(0.08) benign(0.303) TCGA-A7-A0CE-01 20 2413191 2413191 T C TGM6 Missense_Mutation p.S675P 0.19 tolerated(0.13) possibly_damaging(0.633) TCGA-A7-A0CE-01 21 34948162 34948162 A G SON Missense_Mutation p.D2395G 0.08 unknown(0) TCGA-A7-A0CE-01 22 19838908 19838908 C T C22orf29 Missense_Mutation p.E293K 0.28 tolerated(0.69) benign(0.058) TCGA-A7-A0CE-01 22 37699430 37699430 A G CYTH4 Missense_Mutation p.E228G 0.27 tolerated(0.12) benign(0.163) TCGA-A7-A0CE-01 2 203591010 203591010 A G FAM117B Missense_Mutation p.H295R 0.28 tolerated(0.15) benign(0.026) TCGA-A7-A0CE-01 2 71743347 71743347 T G DYSF Missense_Mutation p.L309R 0.23 deleterious(0) probably_damaging(0.997) TCGA-A7-A0CE-01 3 165491226 165491226 A T BCHE Missense_Mutation p.W585R 0.15 deleterious(0) probably_damaging(0.988) TCGA-A7-A0CE-01 3 172428805 172428805 G C NCEH1 Missense_Mutation p.C22W 0.23 tolerated_low_confidence(0.16) benign(0.025) TCGA-A7-A0CE-01 3 183823579 183823579 C A HTR3E Silent p.L275L 0.24 TCGA-A7-A0CE-01 3 49062341 49062341 T C IMPDH2 Missense_Mutation p.N428S 0.41 tolerated(0.9) benign(0.001) TCGA-A7-A0CE-01 3 52088078 52088078 A C DUSP7 Missense_Mutation p.V277G 0.20 deleterious(0) probably_damaging(0.97) TCGA-A7-A0CE-01 4 119948056 119948056 G A SYNPO2 Missense_Mutation p.V178M 0.26 tolerated(0.23) benign(0.017) TCGA-A7-A0CE-01 4 187541514 187541514 C T FAT1 Missense_Mutation p.D2076N 0.11 probably_damaging(1) TCGA-A7-A0CE-01 5 76264725 76264725 G C CRHBP 3'UTR 0.07 TCGA-A7-A0CE-01 6 153043116 153043116 C T MYCT1 Nonsense_Mutation p.R146* 0.21 TCGA-A7-A0CE-01 6 44360503 44360503 G A CDC5L Silent p.R83R 0.52 TCGA-A7-A0CE-01 7 100159886 100159886 C T AGFG2 Silent p.S294S 0.21 TCGA-A7-A0CE-01 7 151265913 151265913 T C PRKAG2 Silent p.V374V 0.15 TCGA-A7-A0CE-01 7 36438976 36438976 G C ANLN Missense_Mutation p.R154P 0.20 deleterious(0) probably_damaging(0.996) TCGA-A7-A0CE-01 9 33464968 33464968 G A NOL6 Silent p.P896P 0.26 TCGA-A7-A0CH-01 11 125476342 125476342 C T STT3A Silent p.I254I 0.04 TCGA-A7-A0CH-01 12 57348901 57348901 G A RDH16 Missense_Mutation p.P121S 0.12 deleterious(0.01) possibly_damaging(0.588) TCGA-A7-A0CH-01 13 97928309 97928309 T A MBNL2 5'UTR 0.29 TCGA-A7-A0CH-01 17 36523768 36523768 G A SOCS7 Missense_Mutation p.G399S 0.12 deleterious(0.04) possibly_damaging(0.871) TCGA-A7-A0CH-01 18 28669470 28669470 C A DSC2 Missense_Mutation p.V188L 0.33 deleterious(0.02) benign(0.058) TCGA-A7-A0CH-01 18 57000396 57000401 TGTGTT - LMAN1 In_Frame_Del p.T433_Q434del 0.42 TCGA-A7-A0CH-01 1 202842746 202842746 C T RP11-480I12.7 RNA 0.16 TCGA-A7-A0CH-01 1 230979500 230979500 A G C1orf198 Missense_Mutation p.L176P 0.23 tolerated(0.32) benign(0.081) TCGA-A7-A0CH-01 1 36367120 36367120 G A AGO1 Missense_Mutation p.D356N 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-A7-A0CH-01 3 153995455 153995455 C T DHX36 Missense_Mutation p.V874I 0.48 tolerated(0.1) probably_damaging(0.951) TCGA-A7-A0CH-01 3 183368623 183368623 A C KLHL24 Missense_Mutation p.E160A 0.35 tolerated(0.1) possibly_damaging(0.794) TCGA-A7-A0CH-01 5 159776696 159776696 C G C1QTNF2 Missense_Mutation p.V158L 0.15 tolerated(0.44) unknown(0) TCGA-A7-A0CH-01 5 52097628 52097628 C A PELO Missense_Mutation p.P371H 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-A7-A0CH-01 6 37622129 37622129 C T MDGA1 Silent p.R301R 0.41 TCGA-A7-A0CH-01 8 35425642 35425642 A T UNC5D Missense_Mutation p.N117Y 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-A7-A0CH-01 8 38033818 38033818 G A LSM1 Silent p.T7T 0.19 TCGA-A7-A0CH-01 9 107581011 107581011 T - ABCA1 Frame_Shift_Del p.K1132Rfs*21 0.24 TCGA-A7-A0CH-01 9 130263367 130263367 C T LRSAM1 Missense_Mutation p.P664L 0.26 deleterious(0) possibly_damaging(0.659) TCGA-A7-A0CH-01 X 53560162 53560162 A G HUWE1 3'UTR 0.20 TCGA-A7-A0D9-01 10 49609776 49609776 C T MAPK8 Nonsense_Mutation p.R25* 0.43 TCGA-A7-A0D9-01 10 91143442 91143442 T C IFIT1B Silent p.T124T 0.34 TCGA-A7-A0D9-01 12 1553842 1553842 C T ERC1 Missense_Mutation p.P1047S 0.12 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-A7-A0D9-01 17 20363706 20363706 C T LGALS9B Silent p.Q30Q 0.24 TCGA-A7-A0D9-01 17 20363713 20363713 C T LGALS9B Missense_Mutation p.G28E 0.26 deleterious(0) probably_damaging(0.999) TCGA-A7-A0D9-01 1 67724313 67724313 G A IL23R Silent p.P464P 0.34 TCGA-A7-A0D9-01 20 47569307 47569307 G A ARFGEF2 Silent p.V163V 0.60 TCGA-A7-A0D9-01 20 52583600 52583600 A G BCAS1 Missense_Mutation p.S399P 0.04 tolerated(0.11) benign(0.013) TCGA-A7-A0D9-01 20 57484803 57484803 C T GNAS Silent p.N904N 0.05 TCGA-A7-A0D9-01 3 178921552 178921552 A C PIK3CA Missense_Mutation p.N345T 0.38 deleterious(0.05) probably_damaging(1) TCGA-A7-A0D9-01 7 110762901 110762901 A T LRRN3 Nonsense_Mutation p.K25* 0.24 TCGA-A7-A0D9-01 8 30706365 30706365 C G TEX15 Missense_Mutation p.E57Q 0.06 deleterious(0.01) probably_damaging(0.967) TCGA-A7-A0DA-01 10 101643811 101643811 T G DNMBP Missense_Mutation p.K1318N 0.31 deleterious(0) probably_damaging(0.973) TCGA-A7-A0DA-01 10 104158163 104158163 C - NFKB2 Frame_Shift_Del p.Y294Ifs*4 0.32 TCGA-A7-A0DA-01 10 104160110 104160118 GCTCTGCTG - NFKB2 In_Frame_Del p.A554_L556del 0.29 TCGA-A7-A0DA-01 10 104160244 104160249 TGAGGG - NFKB2 Splice_Site p.X600_splice 0.20 TCGA-A7-A0DA-01 10 13522910 13522910 C G BEND7 Missense_Mutation p.G299A 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-A7-A0DA-01 10 15720743 15720743 C A ITGA8 Missense_Mutation p.G203V 0.08 deleterious(0) probably_damaging(1) TCGA-A7-A0DA-01 10 16893262 16893262 C G CUBN Missense_Mutation p.R3212T 0.15 tolerated(0.76) benign(0.08) TCGA-A7-A0DA-01 10 29710502 29710502 T A PTCHD3P1 RNA 0.15 TCGA-A7-A0DA-01 10 69299408 69299408 T A CTNNA3 Silent p.S104S 0.35 TCGA-A7-A0DA-01 10 73767504 73767506 AAG - CHST3 In_Frame_Del p.K240del 0.35 TCGA-A7-A0DA-01 10 75071672 75071672 G C TTC18 Missense_Mutation p.Q432E 0.20 tolerated(0.58) possibly_damaging(0.522) TCGA-A7-A0DA-01 11 117060946 117060946 A C SIDT2 Missense_Mutation p.I520L 0.18 deleterious(0.01) benign(0.068) TCGA-A7-A0DA-01 11 117280410 117280410 G A CEP164 Silent p.L1275L 0.38 TCGA-A7-A0DA-01 11 55703812 55703812 C T OR5I1 Missense_Mutation p.R22H 0.44 tolerated(0.94) benign(0.002) TCGA-A7-A0DA-01 11 57313409 57313409 G T SMTNL1 Nonsense_Mutation p.E343* 0.25 TCGA-A7-A0DA-01 11 57996010 57996010 C A OR10Q1 Missense_Mutation p.S113I 0.21 tolerated(0.11) possibly_damaging(0.482) TCGA-A7-A0DA-01 11 66103801 66103801 G C RIN1 Missense_Mutation p.L25V 0.21 tolerated_low_confidence(0.1) benign(0.142) TCGA-A7-A0DA-01 11 6637709 6637709 G A TPP1 Silent p.F304F 0.35 TCGA-A7-A0DA-01 11 75167801 75167801 C A GDPD5 Splice_Site p.X125_splice 0.25 TCGA-A7-A0DA-01 11 76996227 76996227 C G GDPD4 5'UTR 0.14 TCGA-A7-A0DA-01 11 89916133 89916133 G A NAALAD2 Missense_Mutation p.A664T 0.18 deleterious(0) probably_damaging(0.968) TCGA-A7-A0DA-01 12 101790184 101790184 T C ARL1 Missense_Mutation p.M170V 0.18 deleterious(0) benign(0.025) TCGA-A7-A0DA-01 12 20858927 20858927 C T SLCO1C1 Missense_Mutation p.L106F 0.27 tolerated(0.06) benign(0.38) TCGA-A7-A0DA-01 12 41327271 41327271 A C CNTN1 Missense_Mutation p.K238Q 0.28 deleterious(0.04) benign(0.318) TCGA-A7-A0DA-01 12 58140421 58140421 A G TSPAN31 Missense_Mutation p.D121G 0.28 tolerated(0.37) benign(0.011) TCGA-A7-A0DA-01 12 63964604 63964604 G - DPY19L2 Frame_Shift_Del p.A645Efs*12 0.14 TCGA-A7-A0DA-01 12 6804780 6804780 G T PIANP Missense_Mutation p.Q215K 0.21 deleterious_low_confidence(0.03) benign(0.003) TCGA-A7-A0DA-01 12 79689919 79689930 TGAAAGTGTTTC - SYT1 In_Frame_Del p.K183_L186del 0.10 TCGA-A7-A0DA-01 12 88513938 88513938 T C CEP290 Missense_Mutation p.K492R 0.64 possibly_damaging(0.623) TCGA-A7-A0DA-01 13 113200040 113200040 A G TUBGCP3 Silent p.D436D 0.08 TCGA-A7-A0DA-01 13 51599483 51599483 A G RNA5SP29 3'Flank 0.03 TCGA-A7-A0DA-01 13 52345531 52345531 C G DHRS12 Intron 0.36 TCGA-A7-A0DA-01 14 102606230 102606230 A C WDR20 5'Flank 0.16 TCGA-A7-A0DA-01 14 106067884 106067884 G A IGHE Missense_Mutation p.T61M 0.53 tolerated(0.11) benign(0.01) TCGA-A7-A0DA-01 14 23451265 23451265 C A AJUBA Missense_Mutation p.D71Y 0.14 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-A7-A0DA-01 14 31787465 31787465 C G HEATR5A Missense_Mutation p.E1335Q 0.13 deleterious(0) possibly_damaging(0.642) TCGA-A7-A0DA-01 14 42356845 42356845 C G LRFN5 Missense_Mutation p.N339K 0.39 deleterious(0) probably_damaging(0.983) TCGA-A7-A0DA-01 14 45644732 45644732 A G FANCM Silent p.T925T 0.62 TCGA-A7-A0DA-01 14 75469679 75469679 G T EIF2B2 5'UTR 0.23 TCGA-A7-A0DA-01 15 101152633 101152636 GTGA - ASB7 Splice_Site p.X71_splice 0.33 TCGA-A7-A0DA-01 15 32929935 32929935 C A ARHGAP11A Missense_Mutation p.N987K 0.24 tolerated(0.69) benign(0.006) TCGA-A7-A0DA-01 15 76578063 76578063 T A ETFA Silent p.P193P 0.15 TCGA-A7-A0DA-01 15 90904480 90904482 CAT - ZNF774 In_Frame_Del p.H473del 0.14 TCGA-A7-A0DA-01 15 91827281 91827281 G A SV2B Missense_Mutation p.R513Q 0.06 tolerated(0.09) benign(0.025) TCGA-A7-A0DA-01 16 2226284 2226285 AT - TRAF7 Frame_Shift_Del p.M633Dfs*30 0.19 TCGA-A7-A0DA-01 16 2240078 2240078 G T CASKIN1 Missense_Mutation p.N80K 0.16 possibly_damaging(0.771) TCGA-A7-A0DA-01 16 2816694 2816694 A C SRRM2 Missense_Mutation p.R2055S 0.17 unknown(0) TCGA-A7-A0DA-01 16 31121592 31121592 G C BCKDK Missense_Mutation p.D164H 0.05 tolerated(0.13) benign(0.259) TCGA-A7-A0DA-01 16 3458760 3458760 G A ZNF174 Silent p.T355T 0.23 TCGA-A7-A0DA-01 16 3632422 3632422 G C SLX4 Missense_Mutation p.T1809S 0.18 deleterious(0) probably_damaging(0.981) TCGA-A7-A0DA-01 16 58543214 58543214 C G NDRG4 Missense_Mutation p.L327V 0.21 tolerated(0.23) possibly_damaging(0.873) TCGA-A7-A0DA-01 17 26574521 26574521 G T CTD-2008P7.8 RNA 0.23 TCGA-A7-A0DA-01 17 27028471 27028471 C G SUPT6H Missense_Mutation p.A1670G 0.29 tolerated(0.37) benign(0.038) TCGA-A7-A0DA-01 17 3195848 3195848 G A OR3A1 Missense_Mutation p.T10I 0.15 deleterious(0.01) benign(0.078) TCGA-A7-A0DA-01 17 38290099 38290099 C T MSL1 Silent p.T304T 0.28 TCGA-A7-A0DA-01 17 56620848 56620848 C T C17orf47 Missense_Mutation p.A234T 0.14 tolerated(0.46) possibly_damaging(0.908) TCGA-A7-A0DA-01 17 60814611 60814611 C A MARCH10 Silent p.S206S 0.22 TCGA-A7-A0DA-01 17 6978705 6978705 A C CLEC10A Missense_Mutation p.D252E 0.22 deleterious(0) probably_damaging(0.985) TCGA-A7-A0DA-01 17 7158042 7158042 T C ELP5 Missense_Mutation p.L126P 0.27 deleterious(0) probably_damaging(0.984) TCGA-A7-A0DA-01 17 74928858 74928858 G T MGAT5B Splice_Site p.X485_splice 0.54 TCGA-A7-A0DA-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.54 deleterious(0) probably_damaging(1) TCGA-A7-A0DA-01 17 78327033 78327033 C T RNF213 Intron 0.89 TCGA-A7-A0DA-01 18 55361813 55361813 C T ATP8B1 Splice_Site p.X343_splice 0.13 TCGA-A7-A0DA-01 19 11216199 11216199 G T LDLR Missense_Mutation p.S206I 0.37 deleterious(0) probably_damaging(0.993) TCGA-A7-A0DA-01 19 12721569 12721569 A T ZNF490 5'UTR 0.06 TCGA-A7-A0DA-01 19 1611636 1611636 C T TCF3 3'UTR 0.26 TCGA-A7-A0DA-01 19 42474581 42474581 C A ATP1A3 Missense_Mutation p.G806C 0.20 deleterious(0) probably_damaging(0.975) TCGA-A7-A0DA-01 19 43358392 43358392 C A PSG10P RNA 0.16 TCGA-A7-A0DA-01 19 45900186 45900186 C T PPP1R13L Missense_Mutation p.S110N 0.14 deleterious(0) benign(0.057) TCGA-A7-A0DA-01 19 49302971 49302971 C T BCAT2 Missense_Mutation p.R219Q 0.42 deleterious(0) probably_damaging(1) TCGA-A7-A0DA-01 19 50370325 50370325 C A PNKP Missense_Mutation p.C46F 0.09 deleterious(0) probably_damaging(0.991) TCGA-A7-A0DA-01 19 54744774 54744774 G T LILRA6 Nonsense_Mutation p.C296* 0.15 TCGA-A7-A0DA-01 19 55341886 55341886 T A KIR3DL1 3'UTR 0.22 TCGA-A7-A0DA-01 1 100535194 100535194 G C HIAT1 Missense_Mutation p.V282L 0.32 tolerated(0.2) benign(0.109) TCGA-A7-A0DA-01 1 111060445 111060445 T A KCNA10 Missense_Mutation p.E322V 0.19 tolerated(0.24) probably_damaging(0.973) TCGA-A7-A0DA-01 1 118623811 118623811 T C SPAG17 Missense_Mutation p.N708D 0.24 tolerated(0.75) benign(0.004) TCGA-A7-A0DA-01 1 1273446 1273446 T A DVL1 Missense_Mutation p.Y517F 0.38 tolerated(0.09) unknown(0) TCGA-A7-A0DA-01 1 151262465 151262465 G T ZNF687 Missense_Mutation p.M982I 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-A7-A0DA-01 1 154302873 154302873 A C ATP8B2 Missense_Mutation p.E44D 0.14 deleterious(0.04) possibly_damaging(0.801) TCGA-A7-A0DA-01 1 156012608 156012608 C G UBQLN4 Missense_Mutation p.S408T 0.17 deleterious(0.05) benign(0.186) TCGA-A7-A0DA-01 1 160314596 160314596 C G NCSTN Missense_Mutation p.T57S 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-A7-A0DA-01 1 161254386 161254386 C T PCP4L1 3'UTR 0.06 TCGA-A7-A0DA-01 1 162749968 162749968 A G DDR2 Missense_Mutation p.R834G 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A0DA-01 1 162749994 162749994 C A DDR2 Missense_Mutation p.F842L 0.14 deleterious(0) probably_damaging(0.999) TCGA-A7-A0DA-01 1 1669773 1669773 C G SLC35E2 Silent p.L191L 0.03 TCGA-A7-A0DA-01 1 169670813 169670813 G T SELL Missense_Mutation p.F336L 0.14 tolerated(0.48) benign(0.009) TCGA-A7-A0DA-01 1 180047635 180047635 C G CEP350 Nonsense_Mutation p.Y1935* 0.20 TCGA-A7-A0DA-01 1 200017390 200017390 T A NR5A2 Missense_Mutation p.L185H 0.15 tolerated(0.05) benign(0.088) TCGA-A7-A0DA-01 1 20501650 20501650 G A PLA2G2C Intron 0.23 TCGA-A7-A0DA-01 1 211924401 211924401 G A LPGAT1 Missense_Mutation p.P288L 0.40 deleterious(0.02) possibly_damaging(0.821) TCGA-A7-A0DA-01 1 217842375 217842375 G T SPATA17 Missense_Mutation p.V81L 0.15 tolerated(0.8) benign(0.001) TCGA-A7-A0DA-01 1 220928454 220928454 C G MARC2 Missense_Mutation p.H146Q 0.32 tolerated(0.3) benign(0.013) TCGA-A7-A0DA-01 1 222717112 222717112 A T HHIPL2 Missense_Mutation p.D247E 0.20 deleterious(0.01) probably_damaging(0.931) TCGA-A7-A0DA-01 1 230822805 230822805 C T COG2 Missense_Mutation p.T502I 0.12 tolerated(0.11) benign(0.017) TCGA-A7-A0DA-01 1 231349711 231349711 C A TRIM67 Missense_Mutation p.N758K 0.10 deleterious(0) probably_damaging(0.997) TCGA-A7-A0DA-01 1 235922289 235922289 T A LYST Silent p.R2288R 0.10 TCGA-A7-A0DA-01 1 240601454 240601454 C T FMN2 Silent p.F1668F 0.26 TCGA-A7-A0DA-01 1 242024720 242024730 TTCCATAGCTC - EXO1 Frame_Shift_Del p.I321Nfs*6 0.09 TCGA-A7-A0DA-01 1 27097819 27097819 T G ARID1A Splice_Site p.X1136_splice 0.07 TCGA-A7-A0DA-01 1 36411332 36411332 G T AGO3 Missense_Mutation p.R20I 0.19 deleterious(0) probably_damaging(0.98) TCGA-A7-A0DA-01 1 37270745 37270745 C G GRIK3 Missense_Mutation p.S803T 0.15 tolerated(0.84) benign(0.099) TCGA-A7-A0DA-01 1 45553763 45553763 C A ZSWIM5 Missense_Mutation p.V248L 0.03 deleterious(0.01) unknown(0) TCGA-A7-A0DA-01 1 51912687 51912687 C A EPS15 Missense_Mutation p.V248F 0.23 deleterious(0) probably_damaging(0.921) TCGA-A7-A0DA-01 1 65860643 65860643 T A DNAJC6 Missense_Mutation p.F656I 0.19 deleterious(0.03) benign(0.133) TCGA-A7-A0DA-01 1 70385493 70385493 C T LRRC7 Intron 0.24 TCGA-A7-A0DA-01 1 9777151 9777151 C G PIK3CD Silent p.P305P 0.28 TCGA-A7-A0DA-01 20 1434913 1434913 G A NSFL1C Missense_Mutation p.P163L 0.13 tolerated(0.71) possibly_damaging(0.837) TCGA-A7-A0DA-01 20 30227892 30227892 A G COX4I2 Missense_Mutation p.K80R 0.21 deleterious(0) probably_damaging(0.986) TCGA-A7-A0DA-01 20 3782017 3782017 C T CDC25B Silent p.I274I 0.52 TCGA-A7-A0DA-01 20 47989961 47989961 C T KCNB1 Silent p.T712T 0.29 TCGA-A7-A0DA-01 20 60790995 60790995 G A HRH3 3'UTR 0.20 TCGA-A7-A0DA-01 22 21173951 21173951 C G PI4KA Missense_Mutation p.S256T 0.56 tolerated(0.37) benign(0.004) TCGA-A7-A0DA-01 22 39112972 39112972 G C GTPBP1 Missense_Mutation p.M267I 0.09 deleterious(0) benign(0.304) TCGA-A7-A0DA-01 22 45750849 45750862 CTCTTGAAACTTGT - SMC1B Frame_Shift_Del p.D1032Vfs*6 0.24 TCGA-A7-A0DA-01 22 50279086 50279086 G A ZBED4 Silent p.P592P 0.17 TCGA-A7-A0DA-01 2 119752167 119752167 T G MARCO 3'UTR 0.08 TCGA-A7-A0DA-01 2 152490309 152490309 G C NEB Missense_Mutation p.D3091E 0.23 possibly_damaging(0.452) TCGA-A7-A0DA-01 2 189904113 189904113 A T COL5A2 Silent p.A1270A 0.35 TCGA-A7-A0DA-01 2 191898277 191898277 T A STAT4 Missense_Mutation p.L597F 0.29 deleterious(0) probably_damaging(0.999) TCGA-A7-A0DA-01 2 1946873 1946873 C T MYT1L Missense_Mutation p.R129Q 0.18 tolerated(0.51) unknown(0) TCGA-A7-A0DA-01 2 196866584 196866584 T A DNAH7 Splice_Site p.X330_splice 0.06 TCGA-A7-A0DA-01 2 220329218 220329229 GCTGTGCCGGCT - SPEG In_Frame_Del p.L924_L927del 0.71 TCGA-A7-A0DA-01 2 25967180 25967180 C T ASXL2 Missense_Mutation p.A676T 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-A7-A0DA-01 2 29294720 29294720 G T C2orf71 Missense_Mutation p.P803H 0.22 deleterious(0.05) benign(0.384) TCGA-A7-A0DA-01 2 61520625 61520625 G C USP34 Missense_Mutation p.P1508A 0.12 tolerated(0.14) benign(0.04) TCGA-A7-A0DA-01 2 70454946 70454946 G A TIA1 Missense_Mutation p.H107Y 0.28 deleterious(0) probably_damaging(0.935) TCGA-A7-A0DA-01 2 87016512 87016512 C A CD8A Missense_Mutation p.A187S 0.21 deleterious(0.01) probably_damaging(0.929) TCGA-A7-A0DA-01 2 89277990 89277990 T A IGKV3-7 Missense_Mutation p.L115F 0.20 tolerated(0.7) benign(0.001) TCGA-A7-A0DA-01 2 8958915 8958915 C G KIDINS220 Missense_Mutation p.Q39H 0.03 deleterious(0.01) probably_damaging(1) TCGA-A7-A0DA-01 2 98834413 98834413 G C VWA3B Missense_Mutation p.E647D 0.22 tolerated(0.09) benign(0.072) TCGA-A7-A0DA-01 3 108355480 108355480 A T DZIP3 Missense_Mutation p.K312N 0.20 tolerated(0.34) benign(0.424) TCGA-A7-A0DA-01 3 129251435 129251446 CATGGTCATCAT - RHO In_Frame_Del p.I256_I259del 0.20 TCGA-A7-A0DA-01 3 133666169 133666169 A G SLCO2A1 Missense_Mutation p.M409T 0.03 tolerated(0.37) benign(0.002) TCGA-A7-A0DA-01 3 142681136 142681136 C T PAQR9 Missense_Mutation p.G348D 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-A7-A0DA-01 3 170020940 170020940 T C PRKCI 3'UTR 0.09 TCGA-A7-A0DA-01 3 170020961 170020961 C A PRKCI 3'UTR 0.09 TCGA-A7-A0DA-01 3 183390243 183390243 A G KLHL24 Missense_Mutation p.M525V 0.25 tolerated(0.29) benign(0.015) TCGA-A7-A0DA-01 3 183994723 183994723 C T ECE2 Missense_Mutation p.T175M 0.19 deleterious(0) possibly_damaging(0.868) TCGA-A7-A0DA-01 3 195390960 195390960 G C SDHAP2 RNA 0.23 TCGA-A7-A0DA-01 3 197024095 197024095 G A DLG1 5'UTR 0.56 TCGA-A7-A0DA-01 3 38039808 38039808 C A VILL Missense_Mutation p.R299S 0.53 deleterious(0.02) benign(0.101) TCGA-A7-A0DA-01 3 44332261 44332261 A T TOPAZ1 Splice_Site p.X1228_splice 0.35 TCGA-A7-A0DA-01 3 71821748 71821748 A T PROK2 3'UTR 0.28 TCGA-A7-A0DA-01 4 2272401 2272401 C G ZFYVE28 3'UTR 0.18 TCGA-A7-A0DA-01 4 44176682 44176682 C A KCTD8 3'UTR 0.31 TCGA-A7-A0DA-01 4 6642829 6642829 C - MRFAP1 Frame_Shift_Del p.H81Tfs*41 0.24 TCGA-A7-A0DA-01 5 134346160 134346160 G C CATSPER3 Missense_Mutation p.S345T 0.38 tolerated(0.19) benign(0.395) TCGA-A7-A0DA-01 5 160063260 160063260 C A ATP10B Missense_Mutation p.A353S 0.42 tolerated(0.65) benign(0.038) TCGA-A7-A0DA-01 5 167841422 167841422 G C WWC1 Missense_Mutation p.E337D 0.12 tolerated(0.47) possibly_damaging(0.683) TCGA-A7-A0DA-01 6 100897470 100897470 G T SIM1 Missense_Mutation p.Q152K 0.21 tolerated(0.23) benign(0.049) TCGA-A7-A0DA-01 6 106547404 106547404 G C PRDM1 Missense_Mutation p.G214A 0.18 tolerated(0.05) benign(0.044) TCGA-A7-A0DA-01 6 114274578 114274578 G A HDAC2 Missense_Mutation p.H168Y 0.19 deleterious(0.04) benign(0.385) TCGA-A7-A0DA-01 6 132022337 132022337 C T OR2A4 Missense_Mutation p.D69N 0.08 deleterious(0.01) possibly_damaging(0.786) TCGA-A7-A0DA-01 6 133047893 133047893 G C VNN3 Intron 0.17 TCGA-A7-A0DA-01 6 155776951 155776951 C T NOX3 5'UTR 0.30 TCGA-A7-A0DA-01 6 18463570 18463570 C G RNF144B Missense_Mutation p.L244V 0.07 deleterious(0) probably_damaging(0.986) TCGA-A7-A0DA-01 6 26020728 26020728 C T HIST1H3A Missense_Mutation p.T4I 0.18 deleterious_low_confidence(0.01) benign(0.011) TCGA-A7-A0DA-01 6 26043523 26043523 C G HIST1H2BB Missense_Mutation p.K121N 0.20 deleterious_low_confidence(0) benign(0.011) TCGA-A7-A0DA-01 6 26043604 26043604 C G HIST1H2BB Missense_Mutation p.E94D 0.22 deleterious_low_confidence(0.02) benign(0.03) TCGA-A7-A0DA-01 6 26108318 26108318 A G HIST1H1T Missense_Mutation p.S2P 0.49 deleterious(0) possibly_damaging(0.865) TCGA-A7-A0DA-01 6 27840056 27840056 C A HIST1H3I Missense_Mutation p.G13V 0.24 deleterious_low_confidence(0) benign(0.066) TCGA-A7-A0DA-01 6 33244926 33244926 G A B3GALT4 5'UTR 0.24 TCGA-A7-A0DA-01 6 33403338 33403347 CCGAAAGAGA - SYNGAP1 Frame_Shift_Del p.E238Nfs*10 0.21 TCGA-A7-A0DA-01 6 43304909 43304909 C G ZNF318 Missense_Mutation p.S2276T 0.19 benign(0.009) TCGA-A7-A0DA-01 6 49676884 49676884 A G CRISP2 Missense_Mutation p.L9P 0.04 deleterious(0.02) unknown(0) TCGA-A7-A0DA-01 6 64394944 64394944 T A PHF3 Missense_Mutation p.C441S 0.10 tolerated_low_confidence(0.26) benign(0.002) TCGA-A7-A0DA-01 6 73904256 73904256 G A KCNQ5 Missense_Mutation p.A659T 0.17 tolerated(1) benign(0.002) TCGA-A7-A0DA-01 7 100485995 100485995 C G SRRT Missense_Mutation p.P849R 0.19 tolerated(0.15) probably_damaging(0.999) TCGA-A7-A0DA-01 7 120428909 120428909 G A TSPAN12 Nonsense_Mutation p.Q219* 0.16 TCGA-A7-A0DA-01 7 123516844 123516844 G A HYAL4 Missense_Mutation p.D361N 0.16 tolerated(0.27) benign(0.312) TCGA-A7-A0DA-01 7 12609958 12609958 C T SCIN 5'Flank 0.40 TCGA-A7-A0DA-01 7 138440501 138440501 G C ATP6V0A4 Missense_Mutation p.P250R 0.05 deleterious(0) probably_damaging(0.993) TCGA-A7-A0DA-01 7 150171337 150171337 C T GIMAP8 Missense_Mutation p.S307L 0.17 tolerated(0.22) possibly_damaging(0.562) TCGA-A7-A0DA-01 7 21775324 21775337 GGAAAACCTCTAAT - DNAH11 Frame_Shift_Del p.G2510Afs*15 0.24 TCGA-A7-A0DA-01 7 32529929 32529929 T A LSM5 Intron 0.31 TCGA-A7-A0DA-01 7 73255408 73255408 C G WBSCR27 Missense_Mutation p.A82P 0.09 deleterious(0) probably_damaging(0.997) TCGA-A7-A0DA-01 7 99707866 99707866 G A TAF6 Missense_Mutation p.T409I 0.19 deleterious(0.02) benign(0.35) TCGA-A7-A0DA-01 7 99818572 99818572 G A PVRIG Missense_Mutation p.A227T 0.15 tolerated(0.69) benign(0.206) TCGA-A7-A0DA-01 8 109247286 109247286 G C EIF3E Missense_Mutation p.Q138E 0.03 tolerated(0.1) possibly_damaging(0.884) TCGA-A7-A0DA-01 8 113353841 113353841 C G CSMD3 Missense_Mutation p.E2173Q 0.12 tolerated(0.07) possibly_damaging(0.742) TCGA-A7-A0DA-01 8 124663967 124663967 G T KLHL38 Silent p.S400S 0.25 TCGA-A7-A0DA-01 8 139209858 139209858 G A FAM135B Nonsense_Mutation p.R242* 0.30 TCGA-A7-A0DA-01 8 145676111 145676111 C A CYHR1 Missense_Mutation p.R247L 0.03 tolerated(0.17) possibly_damaging(0.859) TCGA-A7-A0DA-01 8 17869182 17869182 C G PCM1 Missense_Mutation p.S1786C 0.22 deleterious(0) probably_damaging(0.999) TCGA-A7-A0DA-01 8 29924354 29924354 G A TMEM66 Missense_Mutation p.P261S 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-A7-A0DA-01 8 39634664 39634664 C A ADAM2 Missense_Mutation p.S303I 0.26 deleterious(0) possibly_damaging(0.845) TCGA-A7-A0DA-01 8 53084997 53085011 CAGATACATTTTTTT - ST18 In_Frame_Del p.E137_S141del 0.20 TCGA-A7-A0DA-01 8 82598029 82598029 C G IMPA1 Missense_Mutation p.S41T 0.32 tolerated_low_confidence(0.42) benign(0.294) TCGA-A7-A0DA-01 9 109773238 109773238 A G ZNF462 Missense_Mutation p.N2483S 0.52 benign(0.002) TCGA-A7-A0DA-01 9 116356374 116356374 T C RGS3 Intron 0.23 TCGA-A7-A0DA-01 9 139935565 139935565 C T NPDC1 Missense_Mutation p.G112R 0.17 tolerated(0.48) benign(0.186) TCGA-A7-A0DA-01 9 2729625 2729625 C T KCNV2 Silent p.R512R 0.43 TCGA-A7-A0DA-01 9 33935827 33935827 C T UBAP2 Intron 0.20 TCGA-A7-A0DA-01 9 71144582 71144582 A T PGM5 3'UTR 0.54 TCGA-A7-A0DA-01 9 95738615 95738615 G T FGD3 Missense_Mutation p.S26I 0.46 tolerated_low_confidence(0.09) benign(0.312) TCGA-A7-A0DA-01 X 131202597 131202597 A G MST4 Silent p.K199K 0.35 TCGA-A7-A0DA-01 X 153586901 153586901 C T FLNA Missense_Mutation p.D1504N 0.46 tolerated(0.08) benign(0.068) TCGA-A7-A0DA-01 X 2406615 2406615 T G ZBED1 3'UTR 0.52 TCGA-A7-A0DA-01 X 3241923 3241923 A G MXRA5 Silent p.A601A 0.16 TCGA-A7-A0DA-01 X 47061807 47061807 C T UBA1 Silent p.F320F 0.30 TCGA-A7-A0DA-01 X 54949939 54949939 T A TRO Missense_Mutation p.I325K 0.21 deleterious(0) unknown(0) TCGA-A7-A0DA-01 X 55117826 55117826 A G PAGE2 Silent p.G85G 0.24 TCGA-A7-A0DA-01 X 74742900 74742900 G C ZDHHC15 5'UTR 0.47 TCGA-A7-A0DA-01 X 8434392 8434392 G T VCX3B Nonsense_Mutation p.E237* 0.24 TCGA-A7-A0DB-01 11 6291530 6291530 G A CCKBR Missense_Mutation p.V206M 0.35 tolerated(0.06) benign(0.017) TCGA-A7-A0DB-01 12 1740546 1740546 C T WNT5B Missense_Mutation p.T9M 0.32 tolerated(0.13) possibly_damaging(0.791) TCGA-A7-A0DB-01 12 7527952 7527952 G T CD163L1 Missense_Mutation p.L976M 0.35 tolerated(0.29) possibly_damaging(0.531) TCGA-A7-A0DB-01 12 996462 996462 C G WNK1 Missense_Mutation p.L1786V 0.07 tolerated(0.07) benign(0.038) TCGA-A7-A0DB-01 14 64447873 64447873 G C SYNE2 Missense_Mutation p.K606N 0.12 probably_damaging(0.999) TCGA-A7-A0DB-01 14 64580096 64580096 C G SYNE2 Missense_Mutation p.S4216C 0.35 possibly_damaging(0.51) TCGA-A7-A0DB-01 14 75283664 75283664 G C YLPM1 Missense_Mutation p.E1906Q 0.14 probably_damaging(0.999) TCGA-A7-A0DB-01 15 44862720 44862720 T G SPG11 Intron 0.19 TCGA-A7-A0DB-01 15 96881143 96881143 A C NR2F2 3'UTR 0.24 TCGA-A7-A0DB-01 16 4012944 4012944 G T ADCY9 3'UTR 0.22 TCGA-A7-A0DB-01 17 42429127 42429127 C T GRN Silent p.L381L 0.20 TCGA-A7-A0DB-01 17 61315386 61315386 A G TANC2 Silent p.Q253Q 0.12 TCGA-A7-A0DB-01 17 62006508 62006508 T C CD79B 3'UTR 0.21 TCGA-A7-A0DB-01 17 74283370 74283370 A T QRICH2 Missense_Mutation p.I1139K 0.08 deleterious(0) probably_damaging(0.956) TCGA-A7-A0DB-01 18 77895086 77895086 C G ADNP2 Missense_Mutation p.S597C 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-A7-A0DB-01 18 8824722 8824722 G A SOGA2 Missense_Mutation p.E1072K 0.16 deleterious(0) probably_damaging(0.987) TCGA-A7-A0DB-01 19 17362429 17362429 C G USHBP1 Missense_Mutation p.Q628H 0.13 tolerated(0.07) benign(0.097) TCGA-A7-A0DB-01 19 19906463 19906463 T C ZNF506 Missense_Mutation p.Y78C 0.23 tolerated(1) benign(0) TCGA-A7-A0DB-01 19 49990803 49990803 C T RPL13A 5'Flank 0.11 TCGA-A7-A0DB-01 19 52537525 52537525 C G ZNF432 Missense_Mutation p.K469N 0.10 tolerated(0.1) probably_damaging(0.998) TCGA-A7-A0DB-01 19 57956493 57956493 G A ZNF749 Silent p.Q659Q 0.26 TCGA-A7-A0DB-01 19 8130997 8130997 C T FBN3 Missense_Mutation p.E2746K 0.62 tolerated(0.15) benign(0.005) TCGA-A7-A0DB-01 1 152552176 152552176 G A LCE3D Silent p.G79G 0.17 TCGA-A7-A0DB-01 1 158608014 158608014 C T SPTA1 Silent p.L1666L 0.09 TCGA-A7-A0DB-01 1 160968529 160968529 C T F11R 3'UTR 0.11 TCGA-A7-A0DB-01 1 201847568 201847568 C G IPO9 3'UTR 0.05 TCGA-A7-A0DB-01 1 236715300 236715300 T G HEATR1 Missense_Mutation p.E2115D 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-A7-A0DB-01 1 236850091 236850091 C T ACTN2 Nonsense_Mutation p.Q40* 0.11 TCGA-A7-A0DB-01 20 48700722 48700722 A C UBE2V1 Missense_Mutation p.F104V 0.50 tolerated(0.36) benign(0.004) TCGA-A7-A0DB-01 2 103300760 103300760 G T SLC9A2 Missense_Mutation p.A464S 0.17 tolerated(0.07) benign(0.159) TCGA-A7-A0DB-01 2 166245948 166245948 C A SCN2A Missense_Mutation p.Q1878K 0.18 deleterious(0.01) benign(0.293) TCGA-A7-A0DB-01 2 233839577 233839577 A G NGEF Silent p.D8D 0.23 TCGA-A7-A0DB-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-A7-A0DB-01 3 63264079 63264079 C T SYNPR 5'UTR 0.18 TCGA-A7-A0DB-01 4 123814028 123814028 A G NUDT6 Silent p.H302H 0.30 TCGA-A7-A0DB-01 5 102201820 102201820 G A PAM 5'UTR 0.40 TCGA-A7-A0DB-01 5 179227915 179227915 G A MGAT4B Silent p.I214I 0.09 TCGA-A7-A0DB-01 5 56167801 56167802 - T MAP3K1 Frame_Shift_Ins p.T457Yfs*4 0.36 TCGA-A7-A0DB-01 5 56174851 56174852 - GC MAP3K1 Frame_Shift_Ins p.E672Rfs*14 0.29 TCGA-A7-A0DB-01 5 70782424 70782424 A G BDP1 Missense_Mutation p.K395E 0.12 tolerated(0.05) possibly_damaging(0.902) TCGA-A7-A0DB-01 6 27115267 27115267 G A HIST1H2AH Silent p.K120K 0.25 TCGA-A7-A0DB-01 7 112124979 112124979 C G LSMEM1 Silent p.A36A 0.20 TCGA-A7-A0DB-01 7 150718359 150718359 C A ATG9B Silent p.L293L 0.09 TCGA-A7-A0DB-01 7 150945681 150945681 C T SMARCD3 5'UTR 0.20 TCGA-A7-A0DB-01 7 150945683 150945683 C T SMARCD3 5'UTR 0.19 TCGA-A7-A0DB-01 7 99621381 99621381 G A ZKSCAN1 Nonsense_Mutation p.W84* 0.52 TCGA-A7-A0DB-01 8 141231675 141231675 G A TRAPPC9 Silent p.I911I 0.27 TCGA-A7-A0DB-01 8 144126161 144126161 C T C8orf31 Silent p.H94H 0.18 TCGA-A7-A0DB-01 8 145107122 145107122 G T OPLAH Missense_Mutation p.H1137Q 0.27 tolerated(0.19) possibly_damaging(0.598) TCGA-A7-A0DB-01 8 145745252 145745252 G A LRRC14 Missense_Mutation p.R48H 0.28 tolerated(0.13) benign(0.017) TCGA-A7-A0DB-01 8 81552610 81552610 T C ZNF704 3'UTR 0.18 TCGA-A7-A0DB-01 8 97622934 97622934 G A SDC2 3'UTR 0.14 TCGA-A7-A0DB-01 9 70177573 70177573 G A FOXD4L5 Silent p.F137F 0.25 TCGA-A7-A0DB-01 X 19362212 19362212 G A PDHA1 Silent p.P19P 0.44 TCGA-A7-A0DB-01 X 51238952 51238952 C T NUDT11 Silent p.R115R 0.34 TCGA-A7-A13D-01 10 102242188 102242188 C G WNT8B Missense_Mutation p.A224G 0.50 tolerated(0.11) benign(0.033) TCGA-A7-A13D-01 10 26781288 26781288 G A APBB1IP Missense_Mutation p.M11I 0.52 deleterious(0) probably_damaging(0.921) TCGA-A7-A13D-01 10 46261214 46261214 T A FAM21C Missense_Mutation p.S609T 0.31 tolerated(0.23) benign(0.004) TCGA-A7-A13D-01 10 49939380 49939380 T C WDFY4 Missense_Mutation p.L452P 0.22 deleterious(0) probably_damaging(0.982) TCGA-A7-A13D-01 10 71978538 71978538 C A PPA1 Missense_Mutation p.W53C 0.15 deleterious(0) probably_damaging(0.998) TCGA-A7-A13D-01 10 72357869 72357869 G A PRF1 Silent p.D536D 0.07 TCGA-A7-A13D-01 10 95326768 95326768 C T FFAR4 Silent p.A97A 0.56 TCGA-A7-A13D-01 10 95719726 95719726 A C PIPSL RNA 0.42 TCGA-A7-A13D-01 11 102826194 102826194 G C MMP13 Missense_Mutation p.T50R 0.30 tolerated(0.54) benign(0.001) TCGA-A7-A13D-01 11 5510400 5510400 G C OR52D1 Missense_Mutation p.S155T 0.31 tolerated(0.05) probably_damaging(0.998) TCGA-A7-A13D-01 11 56020650 56020650 A G OR5T3 Silent p.K325K 0.39 TCGA-A7-A13D-01 11 561784 561784 G C RASSF7 Missense_Mutation p.A6P 0.48 deleterious_low_confidence(0.03) possibly_damaging(0.481) TCGA-A7-A13D-01 11 65546850 65546850 C T AP5B1 Missense_Mutation p.V372I 0.18 tolerated(0.35) benign(0) TCGA-A7-A13D-01 11 7723282 7723282 G C OVCH2 Silent p.G180G 0.23 TCGA-A7-A13D-01 12 109654723 109654723 A T ACACB Missense_Mutation p.I1188F 0.36 deleterious(0.01) probably_damaging(0.952) TCGA-A7-A13D-01 12 122213016 122213016 G T TMEM120B Nonsense_Mutation p.E296* 0.49 TCGA-A7-A13D-01 12 53609502 53609502 G C RARG Nonsense_Mutation p.Y87* 0.15 TCGA-A7-A13D-01 12 53853067 53853067 C G PCBP2 Missense_Mutation p.S85R 0.38 tolerated(0.11) benign(0.013) TCGA-A7-A13D-01 12 70974955 70974955 G C PTPRB Silent p.V813V 0.56 TCGA-A7-A13D-01 12 9905849 9905849 C G CD69 3'UTR 0.16 TCGA-A7-A13D-01 13 103384955 103384955 C A CCDC168 Missense_Mutation p.S1402I 0.22 tolerated(0.45) unknown(0) TCGA-A7-A13D-01 13 114773080 114773080 G C RASA3 Missense_Mutation p.F557L 0.55 deleterious(0.01) benign(0.323) TCGA-A7-A13D-01 13 31205414 31205414 C A USPL1 Missense_Mutation p.A224D 0.41 tolerated(0.21) benign(0.007) TCGA-A7-A13D-01 13 42263507 42263509 CAA - VWA8 In_Frame_Del p.V1371del 0.32 TCGA-A7-A13D-01 14 34419511 34419512 - T EGLN3 Intron 0.18 TCGA-A7-A13D-01 14 35180464 35180464 G C CFL2 3'UTR 0.78 TCGA-A7-A13D-01 15 30025016 30025016 A C TJP1 Silent p.A580A 0.62 TCGA-A7-A13D-01 15 65851018 65851020 GAA - PTPLAD1 In_Frame_Del p.E126del 0.19 TCGA-A7-A13D-01 15 74472355 74472355 G C STRA6 3'UTR 0.19 TCGA-A7-A13D-01 16 30772925 30772925 G A C16orf93 Nonsense_Mutation p.Q49* 0.62 TCGA-A7-A13D-01 16 30958610 30958610 C T FBXL19 3'UTR 0.56 TCGA-A7-A13D-01 16 46858381 46858381 C A C16orf87 Missense_Mutation p.C27F 0.33 deleterious(0) probably_damaging(0.951) TCGA-A7-A13D-01 16 48396330 48396330 G A SIAH1 Nonsense_Mutation p.Q35* 0.30 TCGA-A7-A13D-01 16 87742952 87742952 G A KLHDC4 Missense_Mutation p.R456C 0.49 deleterious(0.01) benign(0.081) TCGA-A7-A13D-01 17 10632347 10632347 C A TMEM220 Splice_Site p.X34_splice 0.26 TCGA-A7-A13D-01 17 26101297 26101297 A C NOS2 Missense_Mutation p.F488V 0.42 tolerated(0.17) probably_damaging(1) TCGA-A7-A13D-01 17 3715650 3715651 CA - C17orf85 3'UTR 0.43 TCGA-A7-A13D-01 17 39782585 39782585 G C KRT17 5'Flank 0.74 TCGA-A7-A13D-01 17 40629720 40629720 G A ATP6V0A1 Missense_Mutation p.E163K 0.12 tolerated(0.21) benign(0.347) TCGA-A7-A13D-01 17 41004004 41004004 C T AOC3 Missense_Mutation p.P215L 0.05 deleterious(0) probably_damaging(0.999) TCGA-A7-A13D-01 17 4391269 4391269 T C SPNS3 3'UTR 0.56 TCGA-A7-A13D-01 17 52978155 52978155 A G TOM1L1 5'UTR 0.15 TCGA-A7-A13D-01 17 7578188 7578188 C A TP53 Nonsense_Mutation p.E221* 0.58 TCGA-A7-A13D-01 17 78188424 78188424 G C SGSH Missense_Mutation p.Q166E 0.33 tolerated(0.43) benign(0.009) TCGA-A7-A13D-01 17 79988695 79988695 G T LRRC45 3'UTR 0.14 TCGA-A7-A13D-01 18 51904661 51904661 C A C18orf54 3'UTR 0.64 TCGA-A7-A13D-01 18 55153600 55153600 G A ONECUT2 3'UTR 0.30 TCGA-A7-A13D-01 19 1269930 1269930 C G CIRBP Intron 0.53 TCGA-A7-A13D-01 19 14876520 14876520 C T EMR2 Nonsense_Mutation p.W244* 0.30 TCGA-A7-A13D-01 19 44278610 44278610 C T KCNN4 Silent p.Q139Q 0.32 TCGA-A7-A13D-01 19 50922195 50922195 G C SPIB 5'UTR 0.11 TCGA-A7-A13D-01 19 56200357 56200357 C T EPN1 Silent p.D311D 0.36 TCGA-A7-A13D-01 19 5917815 5917815 G A RANBP3 Silent p.A550A 0.42 TCGA-A7-A13D-01 19 6476917 6476917 G A DENND1C Missense_Mutation p.A210V 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-A7-A13D-01 1 109241420 109241423 AGAC - PRPF38B Frame_Shift_Del p.R253Mfs*14 0.33 TCGA-A7-A13D-01 1 117620594 117620594 G A TTF2 Missense_Mutation p.G544S 0.17 tolerated(0.06) benign(0) TCGA-A7-A13D-01 1 152329634 152329634 T A FLG2 Nonsense_Mutation p.K210* 0.14 TCGA-A7-A13D-01 1 154155645 154155645 G C TPM3 Intron 0.12 TCGA-A7-A13D-01 1 16261459 16261459 C T SPEN Silent p.S2908S 0.42 TCGA-A7-A13D-01 1 169256497 169256497 T A NME7 Intron 0.38 TCGA-A7-A13D-01 1 212791561 212791561 G A ATF3 Silent p.T111T 0.29 TCGA-A7-A13D-01 1 217804748 217804748 A G SPATA17 Missense_Mutation p.R10G 0.08 deleterious(0.02) benign(0.372) TCGA-A7-A13D-01 1 23236889 23236889 T G EPHB2 Missense_Mutation p.I840M 0.24 deleterious(0.01) possibly_damaging(0.739) TCGA-A7-A13D-01 1 235345422 235345422 T G ARID4B Missense_Mutation p.K938Q 0.44 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A7-A13D-01 1 240966282 240966282 G C RGS7 Nonsense_Mutation p.Y427* 0.16 TCGA-A7-A13D-01 1 24448186 24448186 G C IL22RA1 Missense_Mutation p.I278M 0.29 deleterious(0.01) possibly_damaging(0.733) TCGA-A7-A13D-01 1 27861158 27861158 G A AHDC1 3'UTR 0.47 TCGA-A7-A13D-01 1 32203298 32203298 C G BAI2 Missense_Mutation p.C944S 0.32 tolerated(0.95) probably_damaging(0.999) TCGA-A7-A13D-01 1 33160479 33160479 A G SYNC Missense_Mutation p.V407A 0.36 tolerated(0.17) probably_damaging(0.946) TCGA-A7-A13D-01 1 35658651 35658651 G A SFPQ 5'UTR 0.29 TCGA-A7-A13D-01 1 37949403 37949403 T C ZC3H12A 3'UTR 0.50 TCGA-A7-A13D-01 1 39799297 39799297 C T MACF1 Intron 0.35 TCGA-A7-A13D-01 1 66838921 66838921 C T PDE4B 3'UTR 0.21 TCGA-A7-A13D-01 1 90152042 90152042 G A LRRC8C Missense_Mutation p.V4M 0.26 deleterious(0.01) benign(0.371) TCGA-A7-A13D-01 20 30904100 30904100 A T KIF3B Missense_Mutation p.K495I 0.32 deleterious(0) benign(0.088) TCGA-A7-A13D-01 20 49370232 49370244 GTTGTATATTATT - PARD6B 3'UTR 0.28 TCGA-A7-A13D-01 20 58547126 58547126 G A CDH26 Missense_Mutation p.G114E 0.17 deleterious(0) probably_damaging(0.981) TCGA-A7-A13D-01 20 61907987 61907987 C A ARFGAP1 Missense_Mutation p.A109D 0.36 deleterious(0) probably_damaging(0.919) TCGA-A7-A13D-01 21 43542941 43542941 G T UMODL1 Missense_Mutation p.G1071V 0.25 tolerated(0.06) probably_damaging(0.979) TCGA-A7-A13D-01 22 20100266 20100266 G C TRMT2A Silent p.V566V 0.30 TCGA-A7-A13D-01 22 22054172 22054172 C G YPEL1 3'UTR 0.69 TCGA-A7-A13D-01 22 24951849 24951849 G C GUCD1 5'Flank 0.66 TCGA-A7-A13D-01 22 39781427 39781439 CCCCCACTCTAGA - SYNGR1 3'UTR 0.70 TCGA-A7-A13D-01 22 41576064 41576064 A T EP300 3'UTR 0.53 TCGA-A7-A13D-01 2 174224156 174224156 T C CDCA7 Silent p.F107F 0.14 TCGA-A7-A13D-01 2 174224198 174224198 G A CDCA7 Silent p.E121E 0.12 TCGA-A7-A13D-01 2 179343153 179343153 C G FKBP7 Missense_Mutation p.R25T 0.15 tolerated(0.61) benign(0.001) TCGA-A7-A13D-01 2 196765097 196765097 C T DNAH7 Missense_Mutation p.R1486H 0.18 deleterious(0) probably_damaging(0.992) TCGA-A7-A13D-01 2 220032945 220032945 G C SLC23A3 Missense_Mutation p.T265S 0.22 tolerated(0.56) benign(0.014) TCGA-A7-A13D-01 2 220087494 220087503 GTGCTCTCAC - ATG9A Frame_Shift_Del p.R571Qfs*4 0.12 TCGA-A7-A13D-01 2 233785249 233785249 G A NGEF Silent p.I191I 0.29 TCGA-A7-A13D-01 2 55080895 55080895 C G EML6 Missense_Mutation p.D520E 0.18 deleterious(0.03) benign(0.12) TCGA-A7-A13D-01 2 74756062 74756062 G A AUP1 Missense_Mutation p.P114S 0.42 deleterious(0) probably_damaging(1) TCGA-A7-A13D-01 2 84930672 84930672 G A DNAH6 Missense_Mutation p.E2739K 0.17 tolerated(0.49) benign(0.058) TCGA-A7-A13D-01 2 90078144 90078144 C A IGKV3D-20 Missense_Mutation p.P61T 0.28 deleterious(0.02) possibly_damaging(0.464) TCGA-A7-A13D-01 3 10328735 10328735 C G GHRL Intron 0.19 TCGA-A7-A13D-01 3 123021902 123021902 C A ADCY5 Missense_Mutation p.E908D 0.17 tolerated(0.12) benign(0.045) TCGA-A7-A13D-01 3 129035092 129035092 G A H1FX 5'UTR 0.25 TCGA-A7-A13D-01 3 184911054 184911054 C G EHHADH Missense_Mutation p.V378L 0.38 deleterious(0) probably_damaging(0.959) TCGA-A7-A13D-01 3 197505308 197505308 G A FYTTD1 Silent p.Q277Q 0.30 TCGA-A7-A13D-01 3 197509999 197509999 C T FYTTD1 3'UTR 0.07 TCGA-A7-A13D-01 3 30045454 30045454 T - RBMS3 3'UTR 0.18 TCGA-A7-A13D-01 3 48694701 48694701 C T CELSR3 Missense_Mutation p.V1277M 0.12 deleterious(0) probably_damaging(0.999) TCGA-A7-A13D-01 3 98235543 98235543 C T CLDND1 Missense_Mutation p.R264Q 0.35 deleterious(0.04) benign(0.142) TCGA-A7-A13D-01 4 5844877 5844877 C T CRMP1 Silent p.R325R 0.14 TCGA-A7-A13D-01 5 110407535 110407535 A T TSLP 5'UTR 0.42 TCGA-A7-A13D-01 5 132228002 132228002 G C AFF4 Missense_Mutation p.R831G 0.45 deleterious(0.05) probably_damaging(0.997) TCGA-A7-A13D-01 5 137289955 137289955 G A FAM13B Missense_Mutation p.P518S 0.50 deleterious(0) probably_damaging(0.971) TCGA-A7-A13D-01 5 151784051 151784051 C A NMUR2 Missense_Mutation p.K208N 0.31 deleterious(0.01) possibly_damaging(0.632) TCGA-A7-A13D-01 5 154199668 154199668 C G FAXDC2 3'UTR 0.27 TCGA-A7-A13D-01 5 15938991 15938991 C G FBXL7 3'UTR 0.25 TCGA-A7-A13D-01 5 16680064 16680073 CTTGAATCAG - MYO10 Frame_Shift_Del p.L1509Ifs*7 0.15 TCGA-A7-A13D-01 5 314701 314701 A G PDCD6 3'UTR 0.54 TCGA-A7-A13D-01 5 76029028 76029028 C G F2R Missense_Mutation p.F326L 0.19 deleterious(0) probably_damaging(1) TCGA-A7-A13D-01 5 96079350 96079350 C T CAST Intron 0.08 TCGA-A7-A13D-01 6 116598628 116598628 G A TSPYL1 3'UTR 0.50 TCGA-A7-A13D-01 6 13978376 13978376 C T RNF182 3'UTR 0.21 TCGA-A7-A13D-01 6 153345454 153345454 A - RGS17 Frame_Shift_Del p.I129Mfs*7 0.47 TCGA-A7-A13D-01 6 166918092 166918092 G C RPS6KA2 Missense_Mutation p.F164L 0.68 deleterious(0) probably_damaging(0.985) TCGA-A7-A13D-01 6 30691194 30691194 G A TUBB Missense_Mutation p.V119M 0.50 deleterious_low_confidence(0.03) benign(0.413) TCGA-A7-A13D-01 6 53373506 53373506 C G GCLC Missense_Mutation p.A278P 0.56 deleterious(0) probably_damaging(1) TCGA-A7-A13D-01 7 112459368 112459368 C A C7orf60 3'UTR 0.17 TCGA-A7-A13D-01 7 128485245 128485245 C T FLNC Silent p.V1242V 0.20 TCGA-A7-A13D-01 7 130357607 130357607 T A TSGA13 Missense_Mutation p.D166V 0.20 deleterious(0.02) possibly_damaging(0.904) TCGA-A7-A13D-01 7 135287613 135287613 A - NUP205 Frame_Shift_Del p.K859Rfs*9 0.22 TCGA-A7-A13D-01 7 149482817 149482817 A C SSPO RNA 0.35 TCGA-A7-A13D-01 7 154760837 154760837 C T PAXIP1 Splice_Site p.X359_splice 0.13 TCGA-A7-A13D-01 7 155473489 155473489 G A RBM33 Missense_Mutation p.E152K 0.25 deleterious(0.01) possibly_damaging(0.734) TCGA-A7-A13D-01 7 157046809 157046809 C G UBE3C Silent p.L952L 0.29 TCGA-A7-A13D-01 7 23239963 23239963 G C NUPL2 Missense_Mutation p.G291R 0.34 deleterious(0.05) benign(0.176) TCGA-A7-A13D-01 7 38313225 38313225 G C TRGJP Missense_Mutation p.I8M 0.12 unknown(0) TCGA-A7-A13D-01 7 4273040 4273040 C T SDK1 Missense_Mutation p.T1994M 0.44 tolerated(0.11) benign(0.004) TCGA-A7-A13D-01 7 65160020 65160020 A G INTS4L2 RNA 0.13 TCGA-A7-A13D-01 7 87258230 87258230 G T RUNDC3B Missense_Mutation p.V31L 0.36 deleterious(0) possibly_damaging(0.881) TCGA-A7-A13D-01 8 122626391 122626391 C A HAS2 Missense_Mutation p.R539S 0.28 deleterious(0.01) benign(0.028) TCGA-A7-A13D-01 8 134251151 134251151 G C NDRG1 Silent p.A385A 0.33 TCGA-A7-A13D-01 8 144995865 144995865 C G PLEC Missense_Mutation p.E2845D 0.14 possibly_damaging(0.456) TCGA-A7-A13D-01 8 33354179 33354179 G C MAK16 Missense_Mutation p.D187H 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-A7-A13D-01 8 48730110 48730110 G C PRKDC Missense_Mutation p.S3152C 0.33 probably_damaging(0.94) TCGA-A7-A13D-01 8 57075495 57075495 C T PLAG1 3'UTR 0.54 TCGA-A7-A13D-01 8 89053600 89053600 C G MMP16 3'UTR 0.22 TCGA-A7-A13D-01 8 99467086 99467086 T C STK3 3'UTR 0.16 TCGA-A7-A13D-01 9 116171999 116172001 GTT - POLE3 In_Frame_Del p.N54del 0.47 TCGA-A7-A13D-01 9 130207444 130207444 G C ZNF79 Missense_Mutation p.V489L 0.47 tolerated(0.31) benign(0.001) TCGA-A7-A13D-01 9 136344249 136344249 C A SLC2A6 5'UTR 0.45 TCGA-A7-A13D-01 9 73399144 73399144 T C TRPM3 Missense_Mutation p.N342S 0.12 tolerated(0.11) benign(0.439) TCGA-A7-A13D-01 9 79890418 79890418 A G VPS13A Silent p.S839S 0.55 TCGA-A7-A13D-01 X 119658658 119658658 C T CUL4B 3'Flank 0.21 TCGA-A7-A13D-01 X 147014950 147014950 T C FMR1 Intron 0.44 TCGA-A7-A13D-01 X 51150772 51150772 C T CXorf67 Nonsense_Mutation p.R302* 0.57 TCGA-A7-A13D-01 X 57620064 57620064 G A ZXDB Missense_Mutation p.R528H 0.07 deleterious(0) probably_damaging(0.962) TCGA-A7-A13D-01 X 9864381 9864381 G C SHROOM2 Missense_Mutation p.R811S 0.23 tolerated(0.15) benign(0.023) TCGA-A7-A13D-01 X 99551448 99551448 G T PCDH19 Missense_Mutation p.R1092S 0.55 deleterious_low_confidence(0) benign(0.2) TCGA-A7-A13E-01 10 100503739 100503739 G A HPSE2 Missense_Mutation p.R229C 0.55 deleterious(0.01) possibly_damaging(0.877) TCGA-A7-A13E-01 10 6067839 6067839 T C IL2RA Missense_Mutation p.S72G 0.10 tolerated(0.17) benign(0.121) TCGA-A7-A13E-01 11 133791086 133791086 G A IGSF9B Missense_Mutation p.T845M 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-A7-A13E-01 11 67079427 67079427 C T SSH3 3'UTR 0.50 TCGA-A7-A13E-01 12 113321203 113321203 C A RPH3A Missense_Mutation p.L478I 0.92 deleterious(0) probably_damaging(0.999) TCGA-A7-A13E-01 12 46245837 46245837 A G ARID2 Missense_Mutation p.K1311E 0.44 tolerated_low_confidence(0.06) possibly_damaging(0.84) TCGA-A7-A13E-01 12 66597504 66597504 A C IRAK3 Silent p.S49S 0.35 TCGA-A7-A13E-01 13 114780772 114780772 C T RASA3 Missense_Mutation p.A440T 0.56 tolerated(0.29) benign(0.354) TCGA-A7-A13E-01 13 27664021 27664021 G A USP12 Missense_Mutation p.R245W 0.17 deleterious(0) possibly_damaging(0.7) TCGA-A7-A13E-01 13 39587682 39587682 C T PROSER1 Silent p.T569T 0.22 TCGA-A7-A13E-01 13 46543881 46543881 C T ZC3H13 Missense_Mutation p.R933H 0.48 unknown(0) TCGA-A7-A13E-01 13 46658472 46658472 G A CPB2 Missense_Mutation p.L53F 0.18 tolerated(0.95) probably_damaging(1) TCGA-A7-A13E-01 13 98674104 98674104 C G IPO5 3'UTR 0.65 TCGA-A7-A13E-01 14 23398540 23398540 C A PRMT5 Missense_Mutation p.G11W 0.42 deleterious(0.02) unknown(0) TCGA-A7-A13E-01 14 70243092 70243092 C G SLC10A1 Missense_Mutation p.M319I 0.32 tolerated(0.87) benign(0) TCGA-A7-A13E-01 16 27441412 27441412 C T IL21R Missense_Mutation p.A7V 0.52 tolerated(0.55) benign(0.002) TCGA-A7-A13E-01 16 67757344 67757352 AAAGGAACT - RANBP10 3'UTR 0.35 TCGA-A7-A13E-01 17 60344108 60344108 G A TBC1D3P2 RNA 0.12 TCGA-A7-A13E-01 17 73774801 73774803 CCT - H3F3B In_Frame_Del p.E95del 0.26 TCGA-A7-A13E-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.22 tolerated(0.11) benign(0.308) TCGA-A7-A13E-01 17 7579440 7579459 CCGGTGTAGGAGCTGCTGGT - TP53 Frame_Shift_Del p.P77Gfs*65 0.38 TCGA-A7-A13E-01 19 11687535 11687535 G A ACP5 Missense_Mutation p.R129C 0.50 deleterious(0) probably_damaging(1) TCGA-A7-A13E-01 19 16339652 16339652 C T AP1M1 Silent p.A332A 0.89 TCGA-A7-A13E-01 19 36014376 36014376 G C SBSN 3'UTR 0.22 TCGA-A7-A13E-01 19 36674067 36674067 A G ZNF565 Silent p.I267I 0.12 TCGA-A7-A13E-01 19 39889119 39889119 G T MED29 3'UTR 0.28 TCGA-A7-A13E-01 19 39915205 39915205 A T PLEKHG2 Silent p.T1144T 0.30 TCGA-A7-A13E-01 19 4653088 4653088 C T TNFAIP8L1 3'UTR 0.37 TCGA-A7-A13E-01 19 48578070 48578070 G A PLA2G4C Silent p.T330T 0.87 TCGA-A7-A13E-01 19 49913081 49913081 T G CCDC155 Missense_Mutation p.H406Q 0.81 tolerated_low_confidence(0.58) benign(0.002) TCGA-A7-A13E-01 1 114225905 114225905 A C MAGI3 Missense_Mutation p.I1239L 0.47 tolerated_low_confidence(0.65) benign(0.001) TCGA-A7-A13E-01 1 155294236 155294236 C T RUSC1 Intron 0.27 TCGA-A7-A13E-01 1 175067673 175067673 C A TNN Missense_Mutation p.H687Q 0.51 tolerated(0.22) benign(0.026) TCGA-A7-A13E-01 1 176709226 176709226 C T PAPPA2 Missense_Mutation p.R1349W 0.34 deleterious(0.02) benign(0.443) TCGA-A7-A13E-01 1 186121949 186121949 C A HMCN1 Silent p.I4988I 0.10 TCGA-A7-A13E-01 1 204987343 204987343 G A NFASC 3'UTR 0.15 TCGA-A7-A13E-01 1 208207852 208207852 G A PLXNA2 Missense_Mutation p.S1617F 0.16 deleterious(0) possibly_damaging(0.557) TCGA-A7-A13E-01 1 2118442 2118442 G C C1orf86 3'Flank 0.59 TCGA-A7-A13E-01 1 223986233 223986233 C T TP53BP2 Silent p.P544P 0.36 TCGA-A7-A13E-01 1 235418998 235419001 GTTA - ARID4B Frame_Shift_Del p.L83Qfs*8 0.19 TCGA-A7-A13E-01 1 29609420 29609420 G A PTPRU Missense_Mutation p.A701T 0.26 tolerated(0.08) benign(0.06) TCGA-A7-A13E-01 1 34181939 34181939 C T CSMD2 Missense_Mutation p.R1015H 0.61 deleterious(0.03) probably_damaging(1) TCGA-A7-A13E-01 1 53904142 53904142 G A SLC25A3P1 RNA 0.73 TCGA-A7-A13E-01 1 54417888 54417888 C A LRRC42 Missense_Mutation p.F72L 0.20 tolerated(0.07) probably_damaging(0.997) TCGA-A7-A13E-01 1 89448782 89448782 T G RBMXL1 Missense_Mutation p.Y243S 0.35 deleterious(0.04) probably_damaging(0.937) TCGA-A7-A13E-01 22 48023225 48023225 C A LINC00898 RNA 0.32 TCGA-A7-A13E-01 2 148685990 148685999 CTTTATCACT - ACVR2A 3'UTR 0.24 TCGA-A7-A13E-01 2 160035264 160035271 CCTCGGCT - TANC1 Frame_Shift_Del p.G702Pfs*18 0.42 TCGA-A7-A13E-01 2 163374255 163374255 G T KCNH7 Silent p.R293R 0.43 TCGA-A7-A13E-01 2 207041683 207041683 C T GPR1 Missense_Mutation p.V97M 0.38 tolerated(0.11) possibly_damaging(0.447) TCGA-A7-A13E-01 2 215839540 215839540 G A ABCA12 Silent p.F1810F 0.32 TCGA-A7-A13E-01 2 25967215 25967215 G A ASXL2 Missense_Mutation p.A664V 0.26 deleterious(0) probably_damaging(0.999) TCGA-A7-A13E-01 2 26687737 26687737 C T OTOF Missense_Mutation p.G1654S 0.15 tolerated(0.12) probably_damaging(0.995) TCGA-A7-A13E-01 2 38408943 38408943 T C CYP1B1-AS1 RNA 0.27 TCGA-A7-A13E-01 2 88071774 88071774 C T RGPD2 Missense_Mutation p.S1717N 0.55 deleterious_low_confidence(0) benign(0) TCGA-A7-A13E-01 2 98262609 98262609 C A COX5B Silent p.R20R 0.84 TCGA-A7-A13E-01 3 10119819 10119819 C T FANCD2 Missense_Mutation p.L972F 0.56 deleterious(0.04) possibly_damaging(0.53) TCGA-A7-A13E-01 3 168849290 168849290 C T MECOM Silent p.A56A 0.28 TCGA-A7-A13E-01 3 173322839 173322839 G A NLGN1 Missense_Mutation p.E151K 0.21 deleterious(0) probably_damaging(0.99) TCGA-A7-A13E-01 3 184035124 184035124 C T EIF4G1 Missense_Mutation p.R62W 0.30 deleterious(0) probably_damaging(0.991) TCGA-A7-A13E-01 3 49829169 49829169 G A CDHR4 Missense_Mutation p.A754V 0.21 tolerated(0.37) benign(0.005) TCGA-A7-A13E-01 4 100273815 100273815 T - ADH1C Frame_Shift_Del p.V7* 0.15 TCGA-A7-A13E-01 4 169589473 169589473 G A PALLD Silent p.T347T 0.31 TCGA-A7-A13E-01 4 169847840 169847841 AC - PALLD 3'Flank 0.21 TCGA-A7-A13E-01 4 57181827 57181827 C G KIAA1211 Missense_Mutation p.S720C 0.26 deleterious(0) possibly_damaging(0.843) TCGA-A7-A13E-01 4 57181864 57181864 C A KIAA1211 Silent p.G732G 0.36 TCGA-A7-A13E-01 5 134166633 134166633 G T DDX46 3'Flank 0.38 TCGA-A7-A13E-01 5 134367104 134367106 CTT - PITX1 In_Frame_Del p.K88del 0.34 TCGA-A7-A13E-01 5 159679911 159679911 G C CCNJL 3'UTR 0.69 TCGA-A7-A13E-01 5 171449 171449 C G PLEKHG4B Missense_Mutation p.L958V 0.24 deleterious(0.04) benign(0.068) TCGA-A7-A13E-01 5 180664008 180664008 C G GNB2L1 Missense_Mutation p.R308P 0.07 deleterious(0) probably_damaging(1) TCGA-A7-A13E-01 5 26881404 26881404 C T CDH9 Silent p.T737T 0.41 TCGA-A7-A13E-01 6 111136364 111136364 G C CDK19 5'UTR 0.25 TCGA-A7-A13E-01 6 139487770 139487770 C T HECA Silent p.S207S 0.31 TCGA-A7-A13E-01 6 13977596 13977596 C G RNF182 Silent p.P82P 0.22 TCGA-A7-A13E-01 6 31711701 31711701 C T MSH5 Missense_Mutation p.R146C 0.16 deleterious(0) probably_damaging(1) TCGA-A7-A13E-01 6 39836695 39836695 G A DAAM2 Missense_Mutation p.A287T 0.26 tolerated(0.29) probably_damaging(0.955) TCGA-A7-A13E-01 6 43516145 43516145 A G XPO5 Missense_Mutation p.L638P 0.51 tolerated(0.27) benign(0.391) TCGA-A7-A13E-01 7 101713690 101713690 C T CUX1 Silent p.D98D 0.47 TCGA-A7-A13E-01 7 37780129 37780129 T C GPR141 Missense_Mutation p.M45T 0.23 tolerated(0.69) benign(0.406) TCGA-A7-A13E-01 7 45120315 45120315 G A NACAD Missense_Mutation p.A1533V 0.29 deleterious(0) probably_damaging(0.998) TCGA-A7-A13E-01 8 101932013 101932013 A G YWHAZ 3'UTR 0.19 TCGA-A7-A13E-01 8 133935699 133935699 C T TG Missense_Mutation p.R1549W 0.11 deleterious(0.05) benign(0.003) TCGA-A7-A13E-01 8 23147408 23147408 C G R3HCC1 5'UTR 0.23 TCGA-A7-A13E-01 9 127693680 127693680 G A GOLGA1 Silent p.S47S 0.47 TCGA-A7-A13E-01 9 131346108 131346108 C T SPTAN1 Missense_Mutation p.R685C 0.47 deleterious(0) probably_damaging(0.998) TCGA-A7-A13E-01 9 136313811 136313812 - CGG ADAMTS13 In_Frame_Ins p.R943dup 0.14 TCGA-A7-A13E-01 9 35616245 35616245 G A CD72 Missense_Mutation p.T128M 0.25 tolerated(0.79) benign(0.003) TCGA-A7-A13E-01 9 94485838 94485838 G A ROR2 3'UTR 0.38 TCGA-A7-A13E-01 X 135592323 135592323 G C HTATSF1 Missense_Mutation p.W336S 0.55 deleterious(0.02) probably_damaging(0.972) TCGA-A7-A13F-01 10 103588945 103588945 C T KCNIP2 Missense_Mutation p.D94N 0.29 deleterious(0.05) benign(0.215) TCGA-A7-A13F-01 10 106970986 106970986 C A SORCS3 Missense_Mutation p.Q785K 0.04 tolerated(0.05) benign(0.023) TCGA-A7-A13F-01 11 1101090 1101090 G A MUC2 Missense_Mutation p.V2497I 0.17 unknown(0) TCGA-A7-A13F-01 11 49221856 49221856 T C FOLH1 Missense_Mutation p.N121S 0.54 tolerated(0.16) benign(0.002) TCGA-A7-A13F-01 11 56185039 56185039 C T OR5R1 Missense_Mutation p.A224T 0.48 tolerated(0.17) benign(0.063) TCGA-A7-A13F-01 12 56992725 56992725 C A BAZ2A Missense_Mutation p.V1827L 0.37 deleterious(0) probably_damaging(0.91) TCGA-A7-A13F-01 14 21796707 21796707 A T RPGRIP1 Missense_Mutation p.H1007L 0.72 tolerated(0.1) possibly_damaging(0.894) TCGA-A7-A13F-01 14 74975371 74975371 G A LTBP2 Silent p.H1196H 0.38 TCGA-A7-A13F-01 15 42140773 42140773 C T SPTBN5 3'UTR 0.14 TCGA-A7-A13F-01 17 18221324 18221324 G A SMCR8 Missense_Mutation p.A741T 0.31 tolerated(0.42) benign(0.009) TCGA-A7-A13F-01 17 3776749 3776749 T G CAMKK1 Missense_Mutation p.D373A 0.18 deleterious(0) probably_damaging(0.987) TCGA-A7-A13F-01 17 4837763 4837763 C T GP1BA Silent p.L622L 0.69 TCGA-A7-A13F-01 17 80369359 80369359 T A OGFOD3 Missense_Mutation p.T118S 0.22 tolerated(0.53) benign(0.01) TCGA-A7-A13F-01 19 22836154 22836154 G A ZNF492 5'UTR 0.14 TCGA-A7-A13F-01 19 32968544 32968544 G A DPY19L3 Missense_Mutation p.R605K 0.23 tolerated(0.59) probably_damaging(0.986) TCGA-A7-A13F-01 19 36014402 36014402 G A SBSN 3'UTR 0.39 TCGA-A7-A13F-01 19 49129267 49129267 C T SPHK2 Silent p.G53G 0.24 TCGA-A7-A13F-01 19 54650352 54650352 G C CNOT3 Missense_Mutation p.D285H 0.22 deleterious(0.02) probably_damaging(0.968) TCGA-A7-A13F-01 19 58102287 58102287 C T ZIK1 Nonsense_Mutation p.R370* 0.08 TCGA-A7-A13F-01 19 6833625 6833625 G A VAV1 Missense_Mutation p.R566Q 0.21 deleterious(0.04) possibly_damaging(0.783) TCGA-A7-A13F-01 1 12888632 12888632 C T PRAMEF11 5'UTR 0.51 TCGA-A7-A13F-01 1 154544434 154544434 C T CHRNB2 Missense_Mutation p.R379C 0.12 tolerated(0.12) possibly_damaging(0.72) TCGA-A7-A13F-01 1 161954711 161954711 G A OLFML2B Missense_Mutation p.R512W 0.11 deleterious(0) probably_damaging(0.967) TCGA-A7-A13F-01 1 162743378 162743378 G C DDR2 Missense_Mutation p.K616N 0.49 deleterious(0.02) benign(0.208) TCGA-A7-A13F-01 1 228506585 228506585 T C OBSCN Missense_Mutation p.V5668A 0.17 possibly_damaging(0.845) TCGA-A7-A13F-01 1 236157078 236157078 G A NID1 Silent p.F874F 0.64 TCGA-A7-A13F-01 20 48604456 48604456 C T SNAI1 Missense_Mutation p.R220C 0.28 deleterious(0) probably_damaging(0.997) TCGA-A7-A13F-01 21 44520691 44520691 T C U2AF1 Intron 0.17 TCGA-A7-A13F-01 22 38453858 38453861 GTGA - PICK1 Splice_Site p.X14_splice 0.12 TCGA-A7-A13F-01 2 135745195 135745195 G C MAP3K19 Missense_Mutation p.A416G 0.22 tolerated(0.21) benign(0.001) TCGA-A7-A13F-01 2 24092569 24092569 C A ATAD2B Missense_Mutation p.R347I 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-A7-A13F-01 2 32822992 32822992 G T BIRC6 Missense_Mutation p.S4596I 0.49 probably_damaging(1) TCGA-A7-A13F-01 2 46070194 46070194 C T PRKCE Missense_Mutation p.S135L 0.24 tolerated(0.28) benign(0.003) TCGA-A7-A13F-01 3 142503607 142503607 G A TRPC1 Missense_Mutation p.G341D 0.42 deleterious(0) benign(0.147) TCGA-A7-A13F-01 4 37445614 37445615 - A KIAA1239 Frame_Shift_Ins p.M670Nfs*5 0.22 TCGA-A7-A13F-01 4 88535329 88535329 T A DSPP Missense_Mutation p.S505R 0.22 probably_damaging(0.982) TCGA-A7-A13F-01 5 74077801 74077803 CAT - FAM169A In_Frame_Del p.M499del 0.23 TCGA-A7-A13F-01 6 10410138 10410138 A G TFAP2A Missense_Mutation p.V159A 0.19 tolerated(0.1) benign(0.003) TCGA-A7-A13F-01 6 116879271 116879271 T C FAM26D Missense_Mutation p.L138S 0.61 deleterious(0) possibly_damaging(0.872) TCGA-A7-A13F-01 6 168476527 168476527 C T FRMD1 Intron 0.73 TCGA-A7-A13F-01 6 82459981 82459982 TC - FAM46A Frame_Shift_Del p.E253Dfs*20 0.15 TCGA-A7-A13F-01 7 150741305 150741305 G T ABCB8 Missense_Mutation p.W671C 0.17 tolerated(0.24) benign(0) TCGA-A7-A13F-01 8 72963051 72963051 T C TRPA1 Missense_Mutation p.I623V 0.04 tolerated(0.81) benign(0.003) TCGA-A7-A13F-01 8 77895909 77895909 C T PEX2 Missense_Mutation p.R169H 0.15 deleterious(0) probably_damaging(0.995) TCGA-A7-A13F-01 9 104152702 104152702 G A MRPL50 3'UTR 0.07 TCGA-A7-A13F-01 9 33941724 33941724 C G UBAP2 Missense_Mutation p.D618H 0.05 deleterious(0) probably_damaging(0.984) TCGA-A7-A13F-01 X 117540916 117540916 C T WDR44 Missense_Mutation p.A487V 0.34 tolerated(0.06) benign(0.145) TCGA-A7-A13F-01 X 129150177 129150177 C T BCORL1 Silent p.S1143S 0.17 TCGA-A7-A13F-01 X 149013447 149013447 C T MAGEA8 Missense_Mutation p.T134I 0.09 deleterious(0) probably_damaging(0.993) TCGA-A7-A13G-01 10 12111089 12111089 C G DHTKD1 Silent p.L19L 0.38 TCGA-A7-A13G-01 10 52502735 52502735 C T ASAH2B Silent p.F17F 0.45 TCGA-A7-A13G-01 11 64064626 64064626 C T KCNK4 Missense_Mutation p.R117C 0.45 deleterious(0) probably_damaging(0.999) TCGA-A7-A13G-01 11 68707029 68707029 G A IGHMBP2 Missense_Mutation p.A938T 0.36 deleterious(0.04) benign(0.382) TCGA-A7-A13G-01 11 92531298 92531298 G T FAT3 Missense_Mutation p.D1707Y 0.49 possibly_damaging(0.601) TCGA-A7-A13G-01 12 7550864 7550864 G A CD163L1 Silent p.C575C 0.41 TCGA-A7-A13G-01 15 44705672 44705672 G A CASC4 3'UTR 0.09 TCGA-A7-A13G-01 15 87097616 87097616 C T AGBL1 Silent p.L902L 0.45 TCGA-A7-A13G-01 17 5266266 5266267 AC - RABEP1 Frame_Shift_Del p.Q542Vfs*10 0.37 TCGA-A7-A13G-01 19 44981511 44981511 A T ZNF180 Missense_Mutation p.L396H 0.47 deleterious(0) probably_damaging(0.929) TCGA-A7-A13G-01 1 204210567 204210567 T C PLEKHA6 Missense_Mutation p.E782G 0.23 deleterious(0.05) benign(0) TCGA-A7-A13G-01 1 22073561 22073561 T - USP48 Frame_Shift_Del p.G331Vfs*17 0.41 TCGA-A7-A13G-01 1 89732807 89732807 T C GBP5 Missense_Mutation p.K153R 0.47 tolerated(1) benign(0.009) TCGA-A7-A13G-01 2 215440482 215440482 G A VWC2L Missense_Mutation p.G203R 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-A7-A13G-01 2 242098694 242098694 G A PPP1R7 Missense_Mutation p.E124K 0.34 deleterious(0) probably_damaging(0.992) TCGA-A7-A13G-01 2 39199061 39199061 G A ARHGEF33 Intron 0.44 TCGA-A7-A13G-01 3 126272150 126272150 C T C3orf22 Silent p.P28P 0.44 TCGA-A7-A13G-01 3 178952083 178952083 A C PIK3CA Silent p.A1046A 0.42 TCGA-A7-A13G-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-A7-A13G-01 3 47451185 47451185 G C PTPN23 Missense_Mutation p.A664P 0.52 unknown(0) TCGA-A7-A13G-01 3 48414250 48414250 C T FBXW12 5'UTR 0.39 TCGA-A7-A13G-01 4 151223869 151223869 C G LRBA Missense_Mutation p.G2653A 0.43 tolerated(0.11) probably_damaging(1) TCGA-A7-A13G-01 4 70810640 70810640 G A CSN1S1 Missense_Mutation p.V159I 0.43 tolerated(1) benign(0.049) TCGA-A7-A13G-01 5 137666850 137666850 G A CDC25C Missense_Mutation p.S7L 0.39 deleterious_low_confidence(0.02) benign(0.362) TCGA-A7-A13G-01 5 147582460 147582460 C T SPINK6 5'UTR 0.50 TCGA-A7-A13G-01 5 88047758 88047758 G A MEF2C Silent p.L187L 0.38 TCGA-A7-A13G-01 6 118953648 118953648 C G CEP85L Missense_Mutation p.G70A 0.37 tolerated(0.1) probably_damaging(1) TCGA-A7-A13G-01 6 138754532 138754532 T A NHSL1 Missense_Mutation p.D321V 0.07 deleterious(0) benign(0.029) TCGA-A7-A13G-01 6 159635993 159635993 C T FNDC1 Silent p.N159N 0.40 TCGA-A7-A13G-01 7 142013409 142013409 C T TRBV4-1 Silent p.P88P 0.80 TCGA-A7-A13G-01 7 44579574 44579574 C T NPC1L1 Missense_Mutation p.R141H 0.24 deleterious(0.05) benign(0.017) TCGA-A7-A13G-01 8 145730243 145730243 G T GPT Silent p.A114A 0.42 TCGA-A7-A13G-01 8 61777594 61777594 T A CHD7 Missense_Mutation p.M2699K 0.62 possibly_damaging(0.769) TCGA-A7-A13G-01 X 154159395 154159395 C T F8 Silent p.L890L 0.34 TCGA-A7-A26E-01 10 103371430 103371430 G A FBXW4 Silent p.Y358Y 0.24 TCGA-A7-A26E-01 10 1034404 1034404 G A GTPBP4 5'UTR 0.21 TCGA-A7-A26E-01 10 93256090 93256090 C T HECTD2 Silent p.I547I 0.26 TCGA-A7-A26E-01 10 95279501 95279501 A G CEP55 Silent p.Q376Q 0.21 TCGA-A7-A26E-01 11 118305646 118305646 C T RP11-770J1.4 Missense_Mutation p.E59K 0.65 possibly_damaging(0.486) TCGA-A7-A26E-01 11 12902571 12902571 A - TEAD1 Frame_Shift_Del p.T163Qfs*111 0.37 TCGA-A7-A26E-01 11 19256462 19256462 C T E2F8 Missense_Mutation p.E199K 0.51 deleterious(0.03) benign(0.163) TCGA-A7-A26E-01 12 104167654 104167654 C G NT5DC3 3'UTR 0.26 TCGA-A7-A26E-01 12 112121094 112121094 C T BRAP Missense_Mutation p.E34K 0.33 tolerated(0.3) benign(0.004) TCGA-A7-A26E-01 12 121878877 121878877 C A KDM2B Silent p.L1148L 0.37 TCGA-A7-A26E-01 12 72338138 72338138 A G TPH2 Missense_Mutation p.E107G 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-A7-A26E-01 13 31897924 31897924 C T B3GALTL Silent p.L407L 0.32 TCGA-A7-A26E-01 14 32559810 32559810 T G ARHGAP5 5'UTR 0.23 TCGA-A7-A26E-01 14 45513889 45513889 G A FAM179B Missense_Mutation p.D1324N 0.33 deleterious(0.01) probably_damaging(0.914) TCGA-A7-A26E-01 15 40913336 40913336 C T CASC5 Nonsense_Mutation p.Q318* 0.53 TCGA-A7-A26E-01 15 75967903 75967903 C G CSPG4 Missense_Mutation p.Q2319H 0.46 deleterious(0) probably_damaging(0.999) TCGA-A7-A26E-01 15 83437774 83437774 G A FSD2 Missense_Mutation p.P471S 0.20 deleterious(0.04) possibly_damaging(0.901) TCGA-A7-A26E-01 17 18058670 18058670 G A MYO15A Missense_Mutation p.V2795M 0.24 unknown(0) TCGA-A7-A26E-01 17 58348824 58348824 A G USP32 Missense_Mutation p.I197T 0.41 tolerated(0.19) probably_damaging(0.921) TCGA-A7-A26E-01 17 66871785 66871785 C T ABCA8 Missense_Mutation p.R1447Q 0.28 deleterious(0.01) possibly_damaging(0.582) TCGA-A7-A26E-01 17 71375348 71375348 C A SDK2 Missense_Mutation p.D1650Y 0.35 deleterious(0) unknown(0) TCGA-A7-A26E-01 17 74383309 74383309 C T SPHK1 Missense_Mutation p.S352L 0.24 deleterious(0) possibly_damaging(0.497) TCGA-A7-A26E-01 18 34359414 34359414 G A FHOD3 Missense_Mutation p.R1414Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-A7-A26E-01 18 6890051 6890051 C A ARHGAP28 Silent p.R408R 0.08 TCGA-A7-A26E-01 19 17476399 17476399 G T PLVAP Missense_Mutation p.A292E 0.33 tolerated(0.12) benign(0.297) TCGA-A7-A26E-01 19 19468216 19468216 A G MAU2 3'UTR 0.38 TCGA-A7-A26E-01 1 150596955 150596955 C T ENSA Intron 0.24 TCGA-A7-A26E-01 1 152282658 152282658 G A FLG Silent p.A1568A 0.52 TCGA-A7-A26E-01 1 160341107 160341107 G A NHLH1 3'UTR 0.12 TCGA-A7-A26E-01 1 168283456 168283456 C G TBX19 3'UTR 0.34 TCGA-A7-A26E-01 1 184677381 184677381 C T EDEM3 Missense_Mutation p.R648Q 0.10 tolerated(0.27) benign(0.079) TCGA-A7-A26E-01 1 200843115 200843115 G A GPR25 Missense_Mutation p.R317Q 0.17 tolerated(0.45) benign(0.072) TCGA-A7-A26E-01 1 245530231 245530231 C T KIF26B Silent p.C187C 0.09 TCGA-A7-A26E-01 1 44461845 44461845 C T CCDC24 3'UTR 0.49 TCGA-A7-A26E-01 1 52883656 52883656 A G PRPF38A 3'UTR 0.50 TCGA-A7-A26E-01 1 53326444 53326444 G A ZYG11A Silent p.L350L 0.12 TCGA-A7-A26E-01 1 6272027 6272027 C T RNF207 Missense_Mutation p.R404W 0.64 deleterious(0) probably_damaging(0.962) TCGA-A7-A26E-01 20 10618948 10618952 AAATC - JAG1 3'UTR 0.22 TCGA-A7-A26E-01 20 31878798 31878798 C T BPIFB1 Missense_Mutation p.T134M 0.20 deleterious(0.05) benign(0.013) TCGA-A7-A26E-01 21 36252994 36252995 - C RUNX1 Frame_Shift_Ins p.D123Gfs*15 0.18 TCGA-A7-A26E-01 21 43496126 43496126 C T UMODL1 Missense_Mutation p.S30F 0.40 deleterious(0) possibly_damaging(0.683) TCGA-A7-A26E-01 21 9908294 9908294 C T TEKT4P2 RNA 0.19 TCGA-A7-A26E-01 22 32003986 32003986 G T SFI1 Missense_Mutation p.A741S 0.58 deleterious(0) probably_damaging(0.936) TCGA-A7-A26E-01 22 35713945 35713945 C T TOM1 Missense_Mutation p.T43M 0.64 deleterious(0) probably_damaging(1) TCGA-A7-A26E-01 2 141283540 141283540 G A LRP1B Silent p.F2633F 0.31 TCGA-A7-A26E-01 2 178098803 178098803 C T NFE2L2 Missense_Mutation p.G81D 0.38 deleterious(0) probably_damaging(1) TCGA-A7-A26E-01 2 202622362 202622362 C T ALS2 Missense_Mutation p.E412K 0.28 tolerated(0.18) benign(0.298) TCGA-A7-A26E-01 2 219692583 219692583 C T PRKAG3 Missense_Mutation p.E265K 0.30 deleterious(0) probably_damaging(0.999) TCGA-A7-A26E-01 2 220045923 220045923 G A FAM134A Silent p.K260K 0.30 TCGA-A7-A26E-01 2 74734188 74734188 G A PCGF1 Silent p.I60I 0.26 TCGA-A7-A26E-01 2 75117929 75117929 C T HK2 Missense_Mutation p.A872V 0.28 deleterious(0.01) possibly_damaging(0.489) TCGA-A7-A26E-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.32 deleterious(0.02) probably_damaging(0.959) TCGA-A7-A26E-01 4 106600933 106600933 C A ARHGEF38 3'UTR 0.64 TCGA-A7-A26E-01 4 420491 420491 C A ABCA11P RNA 0.33 TCGA-A7-A26E-01 4 48486056 48486056 G A SLC10A4 Missense_Mutation p.A160T 0.45 tolerated(0.06) benign(0.006) TCGA-A7-A26E-01 5 133916721 133916721 C T JADE2 3'UTR 0.45 TCGA-A7-A26E-01 5 64267547 64267547 G A CWC27 Missense_Mutation p.D354N 0.30 tolerated(1) benign(0) TCGA-A7-A26E-01 5 79855107 79855107 G A ANKRD34B Silent p.H244H 0.34 TCGA-A7-A26E-01 6 105530088 105530088 G C LIN28B 3'UTR 0.29 TCGA-A7-A26E-01 6 4611304 4611304 C A RP4-529N6.1 RNA 0.33 TCGA-A7-A26E-01 7 150773425 150773425 G A SLC4A2 Missense_Mutation p.E1233K 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-A7-A26E-01 9 106901658 106901658 G C SMC2 3'UTR 0.30 TCGA-A7-A26E-01 9 135116406 135116406 G A NTNG2 Silent p.T444T 0.37 TCGA-A7-A26E-01 9 139101011 139101011 C T QSOX2 Missense_Mutation p.V554M 0.23 deleterious(0) probably_damaging(1) TCGA-A7-A26E-01 X 102471783 102471783 G A BEX4 3'UTR 0.31 TCGA-A7-A26E-01 X 114424746 114424746 G A RBMXL3 Missense_Mutation p.D248N 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.658) TCGA-A7-A26E-01 X 150155775 150155775 G T HMGB3 Missense_Mutation p.K155N 0.23 deleterious(0.01) possibly_damaging(0.483) TCGA-A7-A26E-01 X 154490240 154490240 A C RAB39B Missense_Mutation p.F164V 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-A7-A26E-01 X 154490246 154490246 T C RAB39B Missense_Mutation p.K162E 0.40 tolerated(1) benign(0.006) TCGA-A7-A26E-01 X 53224486 53224486 A G KDM5C Missense_Mutation p.L1076P 0.28 deleterious(0.04) possibly_damaging(0.864) TCGA-A7-A26F-01 10 89690810 89690812 GAA T PTEN Frame_Shift_Del p.E73* 0.46 TCGA-A7-A26F-01 10 95720748 95720748 C T PIPSL RNA 0.20 TCGA-A7-A26F-01 11 118656921 118656922 - AC DDX6 Frame_Shift_Ins p.L14Vfs*9 0.13 TCGA-A7-A26F-01 11 66319055 66319055 G A ACTN3 3'UTR 0.23 TCGA-A7-A26F-01 12 131306288 131306288 C G STX2 Missense_Mutation p.E51Q 0.25 tolerated(0.07) possibly_damaging(0.47) TCGA-A7-A26F-01 12 68551735 68551735 G C IFNG Missense_Mutation p.N108K 0.27 deleterious(0.02) benign(0.405) TCGA-A7-A26F-01 13 37453577 37453577 G A SMAD9 Missense_Mutation p.R84C 0.22 deleterious(0) probably_damaging(0.992) TCGA-A7-A26F-01 13 95830023 95830023 G A ABCC4 Silent p.I555I 0.34 TCGA-A7-A26F-01 14 58924491 58924491 G A KIAA0586 Silent p.L512L 0.09 TCGA-A7-A26F-01 15 60794978 60794978 G C RORA Silent p.P421P 0.07 TCGA-A7-A26F-01 17 39579150 39579150 C A KRT37 Missense_Mutation p.E204D 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-A7-A26F-01 17 4540413 4540413 G C ALOX15 Missense_Mutation p.I316M 0.46 deleterious(0) probably_damaging(0.93) TCGA-A7-A26F-01 17 72436047 72436047 C T GPRC5C Silent p.D89D 0.41 TCGA-A7-A26F-01 17 72832376 72832376 C T TMEM104 Silent p.V347V 0.24 TCGA-A7-A26F-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.30 deleterious(0) probably_damaging(0.993) TCGA-A7-A26F-01 18 70209103 70209103 G A CBLN2 Missense_Mutation p.T98M 0.38 tolerated(0.09) benign(0.225) TCGA-A7-A26F-01 19 16926010 16926010 G A NWD1 3'UTR 0.16 TCGA-A7-A26F-01 19 42841015 42841015 C T MEGF8 Missense_Mutation p.T434M 0.45 deleterious(0) probably_damaging(0.998) TCGA-A7-A26F-01 19 48945083 48945083 C T GRIN2D Silent p.D770D 0.18 TCGA-A7-A26F-01 19 50939080 50939080 G A MYBPC2 Missense_Mutation p.V53I 0.39 tolerated(0.21) benign(0.002) TCGA-A7-A26F-01 1 12939659 12939659 C - PRAMEF4 Frame_Shift_Del p.E381Dfs*21 0.42 TCGA-A7-A26F-01 1 155448988 155448988 G A ASH1L Missense_Mutation p.H1225Y 0.30 tolerated_low_confidence(0.35) probably_damaging(0.925) TCGA-A7-A26F-01 1 174977786 174977786 G A CACYBP Silent p.V158V 0.37 TCGA-A7-A26F-01 1 198498240 198498240 C A ATP6V1G3 Missense_Mutation p.D52Y 0.32 deleterious(0) probably_damaging(0.975) TCGA-A7-A26F-01 1 33147439 33147439 G C SYNC 3'UTR 0.05 TCGA-A7-A26F-01 1 67207071 67207071 G C SGIP1 Missense_Mutation p.V806L 0.05 tolerated(0.05) benign(0.089) TCGA-A7-A26F-01 1 94522223 94522223 G A ABCA4 Silent p.L772L 0.21 TCGA-A7-A26F-01 2 120831738 120831738 C T EPB41L5 Missense_Mutation p.R131C 0.19 deleterious(0) probably_damaging(0.954) TCGA-A7-A26F-01 2 175742762 175742762 C T CHN1 Missense_Mutation p.D119N 0.23 deleterious(0) probably_damaging(0.995) TCGA-A7-A26F-01 2 241631392 241631392 C T AQP12A Missense_Mutation p.A21V 0.42 tolerated(0.7) benign(0.002) TCGA-A7-A26F-01 2 96687706 96687706 G A GPAT2 3'UTR 0.13 TCGA-A7-A26F-01 3 123457877 123457877 C T MYLK Missense_Mutation p.R152H 0.37 deleterious(0.02) benign(0.38) TCGA-A7-A26F-01 3 197566213 197566213 G A LRCH3 Missense_Mutation p.A425T 0.07 tolerated(0.39) benign(0.138) TCGA-A7-A26F-01 4 110384604 110384604 C A SEC24B Missense_Mutation p.F227L 0.05 tolerated_low_confidence(0.31) benign(0.008) TCGA-A7-A26F-01 4 37448062 37448062 T C KIAA1239 Silent p.F1484F 0.06 TCGA-A7-A26F-01 4 39347084 39347084 G A RFC1 Missense_Mutation p.R49C 0.21 tolerated_low_confidence(0.19) benign(0.001) TCGA-A7-A26F-01 4 46930237 46930237 C T GABRA4 3'UTR 0.30 TCGA-A7-A26F-01 5 122713082 122713082 G A CEP120 Missense_Mutation p.R782C 0.21 deleterious(0) probably_damaging(0.95) TCGA-A7-A26F-01 5 145531429 145531429 T A LARS Missense_Mutation p.E474V 0.28 deleterious(0) benign(0.174) TCGA-A7-A26F-01 5 67589611 67589612 - AAAAGT PIK3R1 In_Frame_Ins p.K459_S460dup 0.37 TCGA-A7-A26F-01 6 114378876 114378876 C T HS3ST5 Missense_Mutation p.V196M 0.21 deleterious(0.03) probably_damaging(0.983) TCGA-A7-A26F-01 6 119301436 119301436 G A FAM184A Missense_Mutation p.T723M 0.33 deleterious(0.01) possibly_damaging(0.886) TCGA-A7-A26F-01 6 143091359 143091359 T C HIVEP2 Missense_Mutation p.D1506G 0.06 tolerated(0.1) possibly_damaging(0.505) TCGA-A7-A26F-01 7 107115253 107115253 C A GPR22 Missense_Mutation p.Q250K 0.40 tolerated(0.45) benign(0.085) TCGA-A7-A26F-01 7 142829239 142829239 C T PIP Silent p.A10A 0.33 TCGA-A7-A26F-01 7 5103530 5103530 C T RBAK Missense_Mutation p.S148L 0.35 deleterious(0.02) benign(0.273) TCGA-A7-A26F-01 8 121237326 121237326 G A COL14A1 Splice_Site p.X580_splice 0.16 TCGA-A7-A26F-01 X 100910953 100910953 A T ARMCX2 Missense_Mutation p.M541K 0.09 deleterious(0) probably_damaging(0.999) TCGA-A7-A26F-01 X 105278233 105278233 A T SERPINA7 Missense_Mutation p.L346H 0.21 deleterious(0) probably_damaging(0.997) TCGA-A7-A26F-01 X 106310811 106310811 C G RBM41 Silent p.A396A 0.14 TCGA-A7-A26G-01 10 89692920 89692920 T A PTEN Missense_Mutation p.I135K 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-A7-A26G-01 11 128680835 128680835 C A FLI1 Silent p.P437P 0.15 TCGA-A7-A26G-01 11 55322874 55322874 G T OR4C15 Missense_Mutation p.E364D 0.18 tolerated_low_confidence(0.19) benign(0.001) TCGA-A7-A26G-01 11 56043960 56043960 T A OR5T1 Missense_Mutation p.N282K 0.26 tolerated(0.06) benign(0.007) TCGA-A7-A26G-01 11 62300539 62300539 C A AHNAK Silent p.G450G 0.24 TCGA-A7-A26G-01 12 41967119 41967119 C T PDZRN4 Silent p.H846H 0.33 TCGA-A7-A26G-01 12 65640147 65640147 A - LEMD3 3'UTR 0.35 TCGA-A7-A26G-01 14 24649088 24649088 G A REC8 Missense_Mutation p.A511T 0.20 tolerated(0.05) possibly_damaging(0.862) TCGA-A7-A26G-01 15 25223448 25223448 C T SNRPN Missense_Mutation p.P223L 0.18 tolerated_low_confidence(0.09) unknown(0) TCGA-A7-A26G-01 15 31776558 31776558 C T OTUD7A Missense_Mutation p.E574K 0.25 deleterious(0.01) benign(0.416) TCGA-A7-A26G-01 15 75142959 75142959 G A SCAMP2 Silent p.G176G 0.15 TCGA-A7-A26G-01 15 85401424 85401424 C T ALPK3 Missense_Mutation p.P1354L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-A7-A26G-01 16 10788509 10788509 C T TEKT5 Silent p.P74P 0.24 TCGA-A7-A26G-01 16 89220512 89220512 C G ACSF3 Missense_Mutation p.P543R 0.26 deleterious(0.05) benign(0.127) TCGA-A7-A26G-01 17 26912598 26912598 G A SPAG5 Missense_Mutation p.S605F 0.11 tolerated(0.08) benign(0.014) TCGA-A7-A26G-01 17 37666015 37666016 - T CDK12 Splice_Site p.X889_splice 0.22 TCGA-A7-A26G-01 17 7578191 7578191 A G TP53 Missense_Mutation p.Y220H 0.31 deleterious(0) probably_damaging(1) TCGA-A7-A26G-01 18 18534990 18534990 C T ROCK1 Missense_Mutation p.E1203K 0.15 deleterious(0) probably_damaging(0.981) TCGA-A7-A26G-01 19 18184347 18184347 G A IL12RB1 Missense_Mutation p.R255W 0.21 deleterious(0.05) possibly_damaging(0.634) TCGA-A7-A26G-01 19 18704382 18704382 G A CRLF1 Silent p.A421A 0.10 TCGA-A7-A26G-01 19 40095975 40095975 G A LGALS13 Missense_Mutation p.E84K 0.24 tolerated(0.59) benign(0.034) TCGA-A7-A26G-01 19 55598981 55598981 G A EPS8L1 Silent p.%3D 0.13 TCGA-A7-A26G-01 19 57089783 57089783 C A ZNF470 Silent p.A662A 0.14 TCGA-A7-A26G-01 1 144882662 144882662 G C PDE4DIP Silent p.L1119L 0.09 TCGA-A7-A26G-01 1 152327936 152327936 C A FLG2 Missense_Mutation p.G776C 0.12 unknown(0) TCGA-A7-A26G-01 1 16918760 16918760 G T NBPF1 5'UTR 0.16 TCGA-A7-A26G-01 1 190067488 190067488 G T BRINP3 Missense_Mutation p.P654H 0.18 deleterious(0.04) benign(0.01) TCGA-A7-A26G-01 1 231830117 231830117 G T DISC1 Missense_Mutation p.A205S 0.17 tolerated(0.69) benign(0.222) TCGA-A7-A26G-01 20 3944669 3944669 G A RNF24 Missense_Mutation p.S20L 0.32 tolerated_low_confidence(0.89) benign(0) TCGA-A7-A26G-01 21 47349884 47349884 C T PCBP3 Silent p.L257L 0.11 TCGA-A7-A26G-01 22 25255737 25255737 G C SGSM1 Missense_Mutation p.V286L 0.17 tolerated(0.7) benign(0.001) TCGA-A7-A26G-01 22 42070837 42070837 C G NHP2L1 3'UTR 0.11 TCGA-A7-A26G-01 2 125530458 125530458 C A CNTNAP5 Missense_Mutation p.D871E 0.18 deleterious(0) probably_damaging(0.999) TCGA-A7-A26G-01 2 166912953 166912953 C T SCN1A Missense_Mutation p.M147I 0.17 tolerated(0.1) benign(0.002) TCGA-A7-A26G-01 2 228113165 228113165 C G COL4A3 Missense_Mutation p.P159A 0.15 probably_damaging(0.996) TCGA-A7-A26G-01 2 238933990 238933990 A C UBE2F Missense_Mutation p.K97T 0.17 tolerated(0.38) possibly_damaging(0.823) TCGA-A7-A26G-01 2 89247057 89247057 C T IGKV1-5 Missense_Mutation p.G38E 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-A7-A26G-01 2 97531630 97531630 A G SEMA4C Missense_Mutation p.C99R 0.17 deleterious(0) probably_damaging(0.975) TCGA-A7-A26G-01 3 11300881 11300881 G A HRH1 Missense_Mutation p.R53Q 0.17 deleterious(0.02) benign(0.382) TCGA-A7-A26G-01 3 135974724 135974724 C T PCCB Silent p.I70I 0.11 TCGA-A7-A26G-01 3 156979018 156979018 C G VEPH1 Missense_Mutation p.D803H 0.12 deleterious(0) probably_damaging(0.983) TCGA-A7-A26G-01 3 184297701 184297701 C A EPHB3 Nonsense_Mutation p.C717* 0.11 TCGA-A7-A26G-01 3 184298863 184298863 T A EPHB3 Missense_Mutation p.L881H 0.23 tolerated(0.22) benign(0.033) TCGA-A7-A26G-01 3 188202440 188202440 C G LPP Missense_Mutation p.S85C 0.12 tolerated(0.05) possibly_damaging(0.471) TCGA-A7-A26G-01 3 31725409 31725409 G A OSBPL10 Silent p.P481P 0.26 TCGA-A7-A26G-01 3 69134375 69134376 - T ARL6IP5 Splice_Site p.X59_splice 0.53 TCGA-A7-A26G-01 4 109817822 109817822 C G COL25A1 Splice_Site p.X302_splice 0.15 TCGA-A7-A26G-01 4 68484523 68484523 T C UBA6 3'UTR 0.33 TCGA-A7-A26G-01 5 13901544 13901544 G A DNAH5 Silent p.I623I 0.20 TCGA-A7-A26G-01 5 176637364 176637364 G A NSD1 Missense_Mutation p.S655N 0.39 tolerated_low_confidence(0.14) benign(0.017) TCGA-A7-A26G-01 5 5240010 5240010 G C ADAMTS16 Missense_Mutation p.G832A 0.15 deleterious(0) probably_damaging(1) TCGA-A7-A26G-01 6 152718076 152718076 C G SYNE1 Missense_Mutation p.D2464H 0.08 benign(0.232) TCGA-A7-A26G-01 6 165846532 165846532 C A PDE10A Missense_Mutation p.G208V 0.11 deleterious(0) probably_damaging(0.998) TCGA-A7-A26G-01 6 35393844 35393844 G A PPARD Silent p.K438K 0.20 TCGA-A7-A26G-01 6 42236423 42236423 C A TRERF1 Silent p.P302P 0.18 TCGA-A7-A26G-01 6 55216082 55216082 G A GFRAL Silent p.V134V 0.15 TCGA-A7-A26G-01 7 48318080 48318080 T C ABCA13 Missense_Mutation p.I2430T 0.14 benign(0.156) TCGA-A7-A26G-01 7 82579110 82579110 A T PCLO Silent p.I3598I 0.15 TCGA-A7-A26G-01 7 95818665 95818665 G C SLC25A13 Missense_Mutation p.R292G 0.12 tolerated(0.06) benign(0.178) TCGA-A7-A26G-01 7 97498300 97498300 A G ASNS Missense_Mutation p.F57L 0.22 tolerated(0.49) benign(0.124) TCGA-A7-A26G-01 8 110566149 110566149 G C EBAG9 Missense_Mutation p.D47H 0.11 deleterious(0.03) probably_damaging(0.938) TCGA-A7-A26G-01 8 140744326 140744326 C T TRAPPC9 Missense_Mutation p.A1157T 0.25 tolerated(0.8) probably_damaging(0.982) TCGA-A7-A26G-01 9 100849373 100849373 G A TRIM14 3'UTR 0.13 TCGA-A7-A26G-01 9 139887830 139887830 C A C9orf142 Missense_Mutation p.P153T 0.53 tolerated(0.17) benign(0.015) TCGA-A7-A26G-01 X 129271259 129271259 A G AIFM1 Intron 0.29 TCGA-A7-A26G-01 X 149787533 149787533 C A MTM1 Missense_Mutation p.A122D 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A26G-01 X 149905213 149905213 C G MTMR1 Silent p.L401L 0.15 TCGA-A7-A26G-01 X 48838243 48838243 G C GRIPAP1 Silent p.L547L 0.18 TCGA-A7-A26G-01 X 78427390 78427390 A T GPR174 Missense_Mutation p.T296S 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-A7-A26G-01 X 79699057 79699057 C A FAM46D Missense_Mutation p.P340H 0.22 deleterious(0) probably_damaging(1) TCGA-A7-A26G-01 X 79699058 79699058 C A FAM46D Silent p.P340P 0.22 TCGA-A7-A26H-01 10 129913274 129913274 T G MKI67 Missense_Mutation p.K466N 0.16 deleterious(0) probably_damaging(0.941) TCGA-A7-A26H-01 10 17272670 17272670 G C VIM Missense_Mutation p.Q195H 0.12 tolerated(0.54) probably_damaging(0.968) TCGA-A7-A26H-01 10 99338121 99338121 C T ANKRD2 Missense_Mutation p.A132V 0.40 tolerated(0.31) benign(0.043) TCGA-A7-A26H-01 11 1093757 1093757 C T MUC2 Missense_Mutation p.P1859L 0.38 unknown(0) TCGA-A7-A26H-01 11 20636348 20636348 G T SLC6A5 Missense_Mutation p.G370V 0.22 tolerated(0.06) benign(0.155) TCGA-A7-A26H-01 11 2591933 2591933 G A KCNQ1 Missense_Mutation p.V185M 0.15 tolerated(0.13) benign(0.156) TCGA-A7-A26H-01 11 4661647 4661647 G A OR51D1 Silent p.V209V 0.21 TCGA-A7-A26H-01 11 55321885 55321885 T G OR4C15 Missense_Mutation p.C35G 0.23 deleterious_low_confidence(0.02) benign(0.005) TCGA-A7-A26H-01 11 55563055 55563055 G A OR5D14 Silent p.L8L 0.19 TCGA-A7-A26H-01 11 64702827 64702827 C A GPHA2 Intron 0.22 TCGA-A7-A26H-01 11 64722154 64722154 G A C11orf85 Intron 0.16 TCGA-A7-A26H-01 11 66331579 66331579 C T CTSF Missense_Mutation p.G454S 0.15 deleterious(0) probably_damaging(1) TCGA-A7-A26H-01 11 71907146 71907146 G C FOLR1 Missense_Mutation p.M233I 0.10 tolerated(0.15) unknown(0) TCGA-A7-A26H-01 12 111923644 111923644 G A ATXN2 Missense_Mutation p.S937L 0.23 benign(0.023) TCGA-A7-A26H-01 12 121426687 121426687 C A HNF1A Missense_Mutation p.H126Q 0.21 deleterious(0) probably_damaging(0.958) TCGA-A7-A26H-01 12 133306491 133306491 C G ANKLE2 Missense_Mutation p.D753H 0.24 deleterious(0.03) benign(0.264) TCGA-A7-A26H-01 12 44238546 44238546 C T TMEM117 Missense_Mutation p.A31V 0.19 tolerated(0.14) probably_damaging(0.987) TCGA-A7-A26H-01 12 49298100 49298100 G A CCDC65 5'UTR 0.40 TCGA-A7-A26H-01 12 50356101 50356101 G A AQP5 Missense_Mutation p.G101R 0.30 deleterious(0.03) probably_damaging(1) TCGA-A7-A26H-01 12 53854905 53854906 - T PCBP2 Frame_Shift_Ins p.Q161Hfs*61 0.37 TCGA-A7-A26H-01 12 57436929 57436929 C T MYO1A Missense_Mutation p.R342Q 0.26 deleterious(0) possibly_damaging(0.684) TCGA-A7-A26H-01 12 6708939 6708939 C T CHD4 Silent p.T494T 0.21 TCGA-A7-A26H-01 12 68716927 68716927 G C MDM1 Missense_Mutation p.P243A 0.16 tolerated(0.05) probably_damaging(1) TCGA-A7-A26H-01 12 75816780 75816780 G C GLIPR1L2 Intron 0.09 TCGA-A7-A26H-01 12 97087578 97087583 ATCCTC TTCCA C12orf55 Frame_Shift_Del p.I2115Ffs*4 0.15 TCGA-A7-A26H-01 13 102250555 102250555 G A ITGBL1 Silent p.G307G 0.17 TCGA-A7-A26H-01 13 27333383 27333383 G A GPR12 Silent p.L194L 0.23 TCGA-A7-A26H-01 13 33315238 33315238 T G PDS5B Silent p.T809T 0.12 TCGA-A7-A26H-01 13 60545069 60545069 G A DIAPH3 Missense_Mutation p.P626S 0.13 tolerated(0.12) possibly_damaging(0.581) TCGA-A7-A26H-01 13 84453665 84453665 C T SLITRK1 Missense_Mutation p.E660K 0.28 deleterious(0.03) possibly_damaging(0.561) TCGA-A7-A26H-01 14 102442054 102442054 G A DYNC1H1 Missense_Mutation p.V88I 0.09 benign(0.02) TCGA-A7-A26H-01 14 104263855 104263855 T A PPP1R13B Missense_Mutation p.M4L 0.27 tolerated(0.09) benign(0.065) TCGA-A7-A26H-01 14 45653093 45653093 G A FANCM Silent p.Q1501Q 0.14 TCGA-A7-A26H-01 14 61434964 61434964 G C MNAT1 Missense_Mutation p.R276T 0.21 deleterious(0) probably_damaging(0.996) TCGA-A7-A26H-01 14 92159551 92159551 C G CATSPERB Silent p.T250T 0.17 TCGA-A7-A26H-01 16 1254329 1254329 G A CACNA1H Nonsense_Mutation p.W774* 0.50 TCGA-A7-A26H-01 16 22337485 22337485 C T POLR3E Silent p.L584L 0.30 TCGA-A7-A26H-01 16 24579150 24579150 G A RBBP6 Missense_Mutation p.D664N 0.19 deleterious_low_confidence(0.05) possibly_damaging(0.9) TCGA-A7-A26H-01 16 24580231 24580231 G C RBBP6 Missense_Mutation p.K740N 0.08 deleterious_low_confidence(0) unknown(0) TCGA-A7-A26H-01 16 4015842 4015842 G T ADCY9 Missense_Mutation p.D1332E 0.22 deleterious_low_confidence(0.05) benign(0.002) TCGA-A7-A26H-01 16 56974002 56974030 TGGCCCTATTGTGGAAGAAGATGATGAAA CGGC HERPUD1 Frame_Shift_Del p.P252* 0.08 TCGA-A7-A26H-01 16 65319157 65319157 G A LINC00922 RNA 0.41 TCGA-A7-A26H-01 17 12044531 12044531 T C MAP2K4 Missense_Mutation p.L385P 0.52 deleterious(0) probably_damaging(0.968) TCGA-A7-A26H-01 17 27818872 27818872 G T TAOK1 Nonsense_Mutation p.E274* 0.20 TCGA-A7-A26H-01 17 29556189 29556189 C T NF1 Silent p.L852L 0.21 TCGA-A7-A26H-01 17 39274294 39274294 A G KRTAP4-11 Missense_Mutation p.S92P 0.09 tolerated(0.53) unknown(0) TCGA-A7-A26H-01 17 41245484 41245487 TGTC - BRCA1 Frame_Shift_Del p.T688Vfs*12 0.37 TCGA-A7-A26H-01 17 53848489 53848489 C T PCTP Silent p.N94N 0.09 TCGA-A7-A26H-01 17 57968392 57968392 C G TUBD1 5'UTR 0.14 TCGA-A7-A26H-01 17 67537883 67537883 C A MAP2K6 Missense_Mutation p.L332I 0.54 deleterious(0.03) possibly_damaging(0.751) TCGA-A7-A26H-01 17 73489641 73489641 G T KIAA0195 Missense_Mutation p.G719V 0.26 deleterious(0) probably_damaging(1) TCGA-A7-A26H-01 17 8272527 8272527 G A KRBA2 Silent p.D468D 0.24 TCGA-A7-A26H-01 18 54354174 54354174 C T WDR7 Missense_Mutation p.S229L 0.15 deleterious(0.04) benign(0.065) TCGA-A7-A26H-01 18 56585890 56585890 C A ZNF532 Nonsense_Mutation p.S124* 0.12 TCGA-A7-A26H-01 19 1064218 1064218 C T ABCA7 Missense_Mutation p.R2004C 0.50 tolerated(0.07) benign(0.017) TCGA-A7-A26H-01 19 1106407 1106407 C T GPX4 Silent p.I170I 0.38 TCGA-A7-A26H-01 19 12800969 12800969 G C FBXW9 Intron 0.27 TCGA-A7-A26H-01 19 13387897 13387897 C G CACNA1A Missense_Mutation p.E1290Q 0.23 benign(0.113) TCGA-A7-A26H-01 19 15366988 15366988 C G BRD4 Missense_Mutation p.K546N 0.16 benign(0.403) TCGA-A7-A26H-01 19 35450195 35450195 G C ZNF792 Missense_Mutation p.I188M 0.22 tolerated(0.07) benign(0.02) TCGA-A7-A26H-01 19 37129791 37129791 G A ZNF461 Nonsense_Mutation p.Q486* 0.12 TCGA-A7-A26H-01 19 37129879 37129879 G C ZNF461 Silent p.L456L 0.13 TCGA-A7-A26H-01 19 37130138 37130138 G C ZNF461 Nonsense_Mutation p.S370* 0.16 TCGA-A7-A26H-01 19 37130379 37130379 G C ZNF461 Missense_Mutation p.L290V 0.16 tolerated(0.62) probably_damaging(0.926) TCGA-A7-A26H-01 19 42738740 42738740 C T AC006486.9 Missense_Mutation p.D166N 0.15 tolerated(0.5) benign(0.017) TCGA-A7-A26H-01 19 51914305 51914305 C G SIGLEC10 3'UTR 0.32 TCGA-A7-A26H-01 19 53086613 53086613 G C ZNF701 Missense_Mutation p.G500A 0.29 deleterious(0.01) benign(0.018) TCGA-A7-A26H-01 19 54598516 54598516 C G OSCAR 3'UTR 0.16 TCGA-A7-A26H-01 19 54780306 54780306 C T LILRB2 Silent p.Q496Q 0.24 TCGA-A7-A26H-01 19 55451233 55451233 G A NLRP7 Silent p.Y318Y 0.15 TCGA-A7-A26H-01 19 55870450 55870450 C A FAM71E2 Nonsense_Mutation p.E596* 0.20 TCGA-A7-A26H-01 1 110944010 110944010 C G LAMTOR5 3'UTR 0.23 TCGA-A7-A26H-01 1 155733271 155733271 C G GON4L Missense_Mutation p.E1520Q 0.06 deleterious(0) possibly_damaging(0.859) TCGA-A7-A26H-01 1 15890821 15890821 C G DNAJC16 Nonsense_Mutation p.S522* 0.30 TCGA-A7-A26H-01 1 1688035 1688035 C T NADK Missense_Mutation p.V281M 0.21 deleterious(0) probably_damaging(0.996) TCGA-A7-A26H-01 1 16901095 16901095 G C NBPF1 Missense_Mutation p.S762C 0.16 tolerated(0.29) benign(0.234) TCGA-A7-A26H-01 1 171254774 171254774 C T FMO1 3'UTR 0.44 TCGA-A7-A26H-01 1 173556964 173556964 C A SLC9C2 Missense_Mutation p.L121F 0.11 tolerated(0.1) benign(0.056) TCGA-A7-A26H-01 1 176915214 176915214 G T ASTN1 Nonsense_Mutation p.C699* 0.16 TCGA-A7-A26H-01 1 180651527 180651527 A G XPR1 Missense_Mutation p.D34G 0.35 deleterious(0.02) benign(0.3) TCGA-A7-A26H-01 1 209849182 209849182 G A G0S2 Silent p.T51T 0.33 TCGA-A7-A26H-01 1 225239471 225239471 G C DNAH14 Missense_Mutation p.E800Q 0.25 benign(0.011) TCGA-A7-A26H-01 1 227261635 227261635 C T CDC42BPA Missense_Mutation p.E889K 0.20 deleterious(0) probably_damaging(0.991) TCGA-A7-A26H-01 1 44303968 44303968 C T ST3GAL3 Missense_Mutation p.T165M 0.23 deleterious(0.01) probably_damaging(0.961) TCGA-A7-A26H-01 1 59248385 59248385 C A JUN Nonsense_Mutation p.E120* 0.47 TCGA-A7-A26H-01 1 84880273 84880273 C T DNASE2B Nonsense_Mutation p.R270* 0.11 TCGA-A7-A26H-01 1 86173517 86173517 C G ZNHIT6 Missense_Mutation p.E151Q 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-A7-A26H-01 20 44574946 44574946 C T PCIF1 Silent p.F512F 0.20 TCGA-A7-A26H-01 20 44576059 44576059 C G PCIF1 Missense_Mutation p.S622C 0.27 tolerated(0.11) possibly_damaging(0.818) TCGA-A7-A26H-01 20 46271054 46271054 C T NCOA3 Missense_Mutation p.L1060F 0.14 tolerated(0.05) possibly_damaging(0.558) TCGA-A7-A26H-01 20 48260137 48260137 C G B4GALT5 Missense_Mutation p.E139Q 0.18 tolerated(1) benign(0.004) TCGA-A7-A26H-01 20 62493487 62493487 C T ABHD16B Silent p.S198S 0.21 TCGA-A7-A26H-01 21 34652067 34652067 A G IL10RB Silent p.G114G 0.06 TCGA-A7-A26H-01 21 47402592 47402592 G T COL6A1 Missense_Mutation p.V48L 0.58 deleterious(0) unknown(0) TCGA-A7-A26H-01 22 38073045 38073045 G A LGALS1 Missense_Mutation p.R21Q 0.24 tolerated(0.16) benign(0.008) TCGA-A7-A26H-01 22 40704525 40704525 C T TNRC6B Missense_Mutation p.S1377F 0.15 tolerated(0.48) probably_damaging(0.929) TCGA-A7-A26H-01 2 153496517 153496517 C T FMNL2 Missense_Mutation p.L998F 0.12 possibly_damaging(0.765) TCGA-A7-A26H-01 2 153533228 153533228 A C PRPF40A Missense_Mutation p.M241R 0.28 tolerated(0.65) benign(0.042) TCGA-A7-A26H-01 2 170044543 170044543 C T LRP2 Missense_Mutation p.E3089K 0.19 benign(0.426) TCGA-A7-A26H-01 2 209113243 209113243 C T IDH1 Silent p.L88L 0.19 TCGA-A7-A26H-01 2 210558527 210558527 G C MAP2 Missense_Mutation p.D545H 0.14 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-A7-A26H-01 2 210558835 210558835 T C MAP2 Silent p.D647D 0.35 TCGA-A7-A26H-01 2 219895964 219895964 C T CCDC108 Silent p.G293G 0.38 TCGA-A7-A26H-01 2 228176539 228176539 G C COL4A3 Missense_Mutation p.E1656Q 0.21 unknown(0) TCGA-A7-A26H-01 2 228176550 228176550 A C COL4A3 Silent p.I1659I 0.26 TCGA-A7-A26H-01 2 73799946 73799946 G T ALMS1 Nonsense_Mutation p.E3647* 0.26 TCGA-A7-A26H-01 3 172533494 172533494 C A ECT2 Nonsense_Mutation p.S834* 0.11 TCGA-A7-A26H-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.37 tolerated(0.11) possibly_damaging(0.529) TCGA-A7-A26H-01 3 41280699 41280699 G A CTNNB1 Missense_Mutation p.E738K 0.29 tolerated_low_confidence(0.24) benign(0.37) TCGA-A7-A26H-01 3 98110426 98110426 G A OR5K3 Missense_Mutation p.R306K 0.29 tolerated(0.9) benign(0) TCGA-A7-A26H-01 4 125591833 125591833 T A ANKRD50 Missense_Mutation p.I867F 0.15 deleterious(0.03) benign(0.148) TCGA-A7-A26H-01 4 125591849 125591849 C G ANKRD50 Missense_Mutation p.L861F 0.19 deleterious(0.05) possibly_damaging(0.722) TCGA-A7-A26H-01 4 13605856 13605856 C G BOD1L1 Missense_Mutation p.E890Q 0.21 probably_damaging(0.948) TCGA-A7-A26H-01 4 147628202 147628202 G A TTC29 3'UTR 0.16 TCGA-A7-A26H-01 4 148559813 148559813 G A PRMT10 Missense_Mutation p.S803L 0.06 tolerated(0.68) benign(0.003) TCGA-A7-A26H-01 4 159791486 159791486 G A FNIP2 Silent p.Q938Q 0.22 TCGA-A7-A26H-01 4 185578352 185578352 G C PRIMPOL Missense_Mutation p.E20Q 0.10 benign(0.035) TCGA-A7-A26H-01 4 5830394 5830394 G A CRMP1 Missense_Mutation p.A542V 0.40 tolerated(0.06) benign(0.013) TCGA-A7-A26H-01 5 140228399 140228399 G A PCDHA9 Missense_Mutation p.E107K 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A7-A26H-01 5 140237164 140237164 G A PCDHA10 Missense_Mutation p.A511T 0.11 deleterious_low_confidence(0.01) benign(0.179) TCGA-A7-A26H-01 5 140503864 140503864 G T PCDHB4 Nonsense_Mutation p.E762* 0.17 TCGA-A7-A26H-01 5 14693019 14693019 C G FAM105B Silent p.L307L 0.44 TCGA-A7-A26H-01 5 179757778 179757778 C G GFPT2 Silent p.L152L 0.15 TCGA-A7-A26H-01 5 70757714 70757714 G A BDP1 Missense_Mutation p.R187K 0.25 deleterious(0) probably_damaging(0.995) TCGA-A7-A26H-01 5 79473175 79473175 C G SERINC5 Missense_Mutation p.G140A 0.09 tolerated(0.94) possibly_damaging(0.764) TCGA-A7-A26H-01 6 110528706 110528706 C T CDC40 Intron 0.19 TCGA-A7-A26H-01 6 110768127 110768127 C T SLC22A16 Silent p.A200A 0.31 TCGA-A7-A26H-01 6 137330612 137330612 C A IL20RA Nonsense_Mutation p.E141* 0.15 TCGA-A7-A26H-01 6 160461698 160461698 C T IGF2R Silent p.L474L 0.25 TCGA-A7-A26H-01 6 26031997 26031997 C T HIST1H3B Missense_Mutation p.E98K 0.19 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-A7-A26H-01 6 28403768 28403768 C T ZSCAN23 Silent p.V92V 0.15 TCGA-A7-A26H-01 6 51732776 51732776 G A PKHD1 Missense_Mutation p.L2540F 0.16 deleterious(0) possibly_damaging(0.883) TCGA-A7-A26H-01 6 70948982 70948982 A T COL9A1 Missense_Mutation p.I696K 0.29 benign(0.372) TCGA-A7-A26H-01 6 89638949 89638949 G A RNGTT Missense_Mutation p.S71L 0.20 tolerated(0.05) benign(0.062) TCGA-A7-A26H-01 7 1166897 1166897 G C C7orf50 Missense_Mutation p.S42C 0.26 tolerated(0.06) benign(0.029) TCGA-A7-A26H-01 7 133863335 133863335 G A LRGUK Silent p.V396V 0.24 TCGA-A7-A26H-01 7 139299077 139299077 C G HIPK2 Missense_Mutation p.D649H 0.16 deleterious(0) possibly_damaging(0.77) TCGA-A7-A26H-01 7 150916170 150916170 C G ABCF2 Missense_Mutation p.D333H 0.19 deleterious(0) possibly_damaging(0.828) TCGA-A7-A26H-01 7 36397019 36397019 T G KIAA0895 Missense_Mutation p.Y120S 0.08 deleterious_low_confidence(0.02) benign(0.001) TCGA-A7-A26H-01 7 86415885 86415885 G A GRM3 Silent p.V259V 0.24 TCGA-A7-A26H-01 8 109462671 109462671 G A EMC2 Missense_Mutation p.E57K 0.11 deleterious(0) probably_damaging(1) TCGA-A7-A26H-01 8 25715990 25715990 G A EBF2 Missense_Mutation p.P458L 0.08 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-A7-A26H-01 8 61765855 61765855 G C CHD7 Missense_Mutation p.E2191Q 0.21 benign(0.015) TCGA-A7-A26H-01 9 101235526 101235526 G A GABBR2 Missense_Mutation p.R301C 0.19 deleterious(0.04) possibly_damaging(0.671) TCGA-A7-A26H-01 9 116247927 116247927 C T RGS3 Nonsense_Mutation p.Q215* 0.11 TCGA-A7-A26H-01 9 126345542 126345542 C G DENND1A Missense_Mutation p.R258T 0.17 deleterious(0) probably_damaging(0.978) TCGA-A7-A26H-01 X 110970673 110970673 G T ALG13 Missense_Mutation p.R697L 0.24 deleterious(0.02) possibly_damaging(0.571) TCGA-A7-A26H-01 X 128602783 128602783 C A SMARCA1 Missense_Mutation p.G889C 0.17 deleterious(0) probably_damaging(0.996) TCGA-A7-A26H-01 X 153129444 153129444 G A L1CAM Silent p.F1117F 0.32 TCGA-A7-A26H-01 X 153662003 153662003 G A ATP6AP1 Silent p.L207L 0.14 TCGA-A7-A26H-01 X 17768235 17768235 C T SCML1 Silent p.L175L 0.17 TCGA-A7-A26H-01 X 53114174 53114174 C T TSPYL2 Missense_Mutation p.R346W 0.25 deleterious(0.05) probably_damaging(1) TCGA-A7-A26H-01 X 77369391 77369391 G A PGK1 Silent p.L89L 0.11 TCGA-A7-A26H-01 X 8553307 8553307 C A KAL1 Splice_Site p.X286_splice 0.26 TCGA-A7-A26I-01 10 102753070 102753070 G C C10orf2 Missense_Mutation p.E620Q 0.29 deleterious(0.03) possibly_damaging(0.737) TCGA-A7-A26I-01 10 118117402 118117402 A C CCDC172 Missense_Mutation p.E202A 0.13 deleterious(0) probably_damaging(0.999) TCGA-A7-A26I-01 10 124351807 124351807 C A DMBT1 Silent p.T732T 0.17 TCGA-A7-A26I-01 10 1405909 1405909 C G ADARB2 Missense_Mutation p.V131L 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-A7-A26I-01 10 43015552 43015552 G A ZNF37BP RNA 0.62 TCGA-A7-A26I-01 10 50594777 50594777 G T DRGX Missense_Mutation p.P126H 0.13 deleterious(0) benign(0.395) TCGA-A7-A26I-01 10 93572900 93572900 A G TNKS2 Silent p.R120R 0.12 TCGA-A7-A26I-01 11 20699549 20699549 C T NELL1 Missense_Mutation p.L43F 0.43 tolerated(0.7) benign(0.001) TCGA-A7-A26I-01 11 72552500 72552500 G A FCHSD2 Silent p.N685N 0.38 TCGA-A7-A26I-01 12 109530530 109530530 T C ALKBH2 Missense_Mutation p.E21G 0.21 tolerated_low_confidence(0.12) benign(0.054) TCGA-A7-A26I-01 12 27117745 27117745 A G FGFR1OP2 3'UTR 0.63 TCGA-A7-A26I-01 12 57873203 57873203 G T ARHGAP9 5'UTR 0.88 TCGA-A7-A26I-01 13 100425236 100425236 G C CLYBL Missense_Mutation p.C74S 0.23 deleterious(0) probably_damaging(0.995) TCGA-A7-A26I-01 15 24922617 24922617 G A NPAP1 Missense_Mutation p.V535I 0.63 tolerated(0.96) benign(0.013) TCGA-A7-A26I-01 15 28483866 28483866 T C HERC2 Missense_Mutation p.I1210M 0.25 probably_damaging(0.942) TCGA-A7-A26I-01 15 71184461 71184461 A T THAP10 Missense_Mutation p.S51T 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-A7-A26I-01 16 4802807 4802807 G A ZNF500 Missense_Mutation p.S338F 0.17 deleterious(0) probably_damaging(0.979) TCGA-A7-A26I-01 17 27211282 27211282 C A FLOT2 Silent p.T61T 0.24 TCGA-A7-A26I-01 17 43321319 43321319 C T FMNL1 Missense_Mutation p.P792L 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-A7-A26I-01 17 54969350 54969350 C T TRIM25 Missense_Mutation p.R535Q 0.79 deleterious(0) probably_damaging(1) TCGA-A7-A26I-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.55 deleterious(0) probably_damaging(0.999) TCGA-A7-A26I-01 18 33785106 33785106 C A MOCOS Missense_Mutation p.S362Y 0.38 deleterious(0) possibly_damaging(0.776) TCGA-A7-A26I-01 19 23927048 23927048 G A ZNF681 Missense_Mutation p.S435L 0.61 deleterious(0.01) benign(0.005) TCGA-A7-A26I-01 19 40199876 40199876 C T LGALS14 Nonsense_Mutation p.R144* 0.25 TCGA-A7-A26I-01 19 44602024 44602024 A - ZNF224 5'UTR p.M1? 0.47 TCGA-A7-A26I-01 1 155451796 155451796 T C ASH1L Missense_Mutation p.K289E 0.11 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-A7-A26I-01 1 156263310 156263310 C T C1orf85 Missense_Mutation p.A286T 0.19 deleterious(0) benign(0.384) TCGA-A7-A26I-01 1 160264342 160264342 G A COPA Missense_Mutation p.L879F 0.29 tolerated(0.06) benign(0.078) TCGA-A7-A26I-01 1 206760010 206760010 C A RASSF5 Intron 0.31 TCGA-A7-A26I-01 21 16337258 16337258 C G NRIP1 Missense_Mutation p.D1086H 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.673) TCGA-A7-A26I-01 21 43829605 43829605 C T UBASH3A Missense_Mutation p.T81M 0.25 deleterious(0.03) benign(0.223) TCGA-A7-A26I-01 2 130833036 130833036 T C POTEF Missense_Mutation p.Q670R 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.885) TCGA-A7-A26I-01 2 143676216 143676216 T A KYNU Missense_Mutation p.Y70N 0.10 deleterious(0) probably_damaging(1) TCGA-A7-A26I-01 2 179615822 179615822 T A TTN Intron 0.12 TCGA-A7-A26I-01 2 62729608 62729608 C T TMEM17 Silent p.R94R 0.14 TCGA-A7-A26I-01 2 90139432 90139432 C A IGKV1D-16 Missense_Mutation p.S68Y 0.17 deleterious(0.01) benign(0.039) TCGA-A7-A26I-01 2 97350081 97350081 G C FER1L5 RNA 0.31 TCGA-A7-A26I-01 3 179605499 179605499 G A PEX5L Missense_Mutation p.S91L 0.20 deleterious_low_confidence(0.03) benign(0.102) TCGA-A7-A26I-01 4 56846363 56846363 C T CEP135 Missense_Mutation p.R510C 0.22 tolerated(0.33) benign(0.002) TCGA-A7-A26I-01 7 30544259 30544259 C A GGCT Missense_Mutation p.G23C 0.25 deleterious(0) probably_damaging(1) TCGA-A7-A26I-01 8 61773610 61773610 C T CHD7 Missense_Mutation p.P2586S 0.27 possibly_damaging(0.858) TCGA-A7-A26I-01 9 109689154 109689154 C T ZNF462 Silent p.N987N 0.06 TCGA-A7-A26I-01 9 85863339 85863339 C T FRMD3 Missense_Mutation p.E430K 0.51 tolerated(0.55) benign(0.113) TCGA-A7-A26I-01 X 128722977 128722977 G C OCRL Missense_Mutation p.R819P 0.43 tolerated(0.22) possibly_damaging(0.834) TCGA-A7-A26I-01 X 152128305 152128305 G A ZNF185 Missense_Mutation p.R522K 0.10 tolerated(0.49) benign(0.02) TCGA-A7-A26I-01 X 18843873 18843873 A C PPEF1 Missense_Mutation p.H557P 0.12 tolerated(0.06) benign(0.112) TCGA-A7-A26I-01 X 79937970 79937970 G T BRWD3 Missense_Mutation p.A1464E 0.18 tolerated(0.07) probably_damaging(0.922) TCGA-A7-A26J-01 10 129845722 129845722 C T PTPRE Missense_Mutation p.L60F 0.39 tolerated(0.8) benign(0.077) TCGA-A7-A26J-01 10 6528089 6528089 G T PRKCQ Missense_Mutation p.H270N 0.25 deleterious(0) probably_damaging(0.996) TCGA-A7-A26J-01 11 59861502 59861502 C T MS4A2 Silent p.I201I 0.34 TCGA-A7-A26J-01 12 129566436 129566436 C A TMEM132D Silent p.L597L 0.55 TCGA-A7-A26J-01 12 24970231 24970231 C A BCAT1 3'Flank 0.27 TCGA-A7-A26J-01 12 72179680 72179681 - T RAB21 3'UTR 0.45 TCGA-A7-A26J-01 13 36424764 36424764 A T DCLK1 Intron 0.36 TCGA-A7-A26J-01 14 75352289 75352289 G T DLST Missense_Mutation p.G33V 0.37 tolerated(0.06) benign(0.025) TCGA-A7-A26J-01 14 91931754 91931754 C T SMEK1 Missense_Mutation p.R544H 0.22 deleterious(0) probably_damaging(0.989) TCGA-A7-A26J-01 15 42132397 42132397 G A PLA2G4B Silent p.L248L 0.10 TCGA-A7-A26J-01 17 18429641 18429641 G C FAM106A Silent p.L159L 0.12 TCGA-A7-A26J-01 17 32483404 32483404 C T ASIC2 Missense_Mutation p.V50M 0.45 deleterious(0.03) benign(0.017) TCGA-A7-A26J-01 17 73586046 73586046 C G MYO15B 5'Flank 0.21 TCGA-A7-A26J-01 17 78307961 78307961 C G RNF213 Silent p.L1400L 0.15 TCGA-A7-A26J-01 19 11708362 11708362 C T ZNF627 5'UTR 0.37 TCGA-A7-A26J-01 19 37406972 37406972 T A ZNF829 5'Flank 0.29 TCGA-A7-A26J-01 19 58879909 58879909 T G ZNF837 Missense_Mutation p.D264A 0.13 tolerated(0.87) benign(0.001) TCGA-A7-A26J-01 19 8127191 8127191 T C CCL25 3'UTR 0.18 TCGA-A7-A26J-01 1 142803954 142803954 A G RP11-423O2.5 RNA 0.29 TCGA-A7-A26J-01 1 237756796 237756796 C A RYR2 Silent p.I1432I 0.05 TCGA-A7-A26J-01 1 58946709 58946709 C T OMA1 Missense_Mutation p.M501I 0.59 tolerated(0.19) benign(0.005) TCGA-A7-A26J-01 20 39793679 39793679 G A PLCG1 Missense_Mutation p.V442M 0.07 deleterious(0.02) probably_damaging(1) TCGA-A7-A26J-01 20 48124536 48124536 T G PTGIS Missense_Mutation p.E475A 0.48 tolerated(0.65) benign(0.005) TCGA-A7-A26J-01 22 32293469 32293469 T A DEPDC5 Missense_Mutation p.V1393D 0.59 deleterious(0) probably_damaging(0.998) TCGA-A7-A26J-01 22 51049381 51049382 - G MAPK8IP2 3'UTR 0.47 TCGA-A7-A26J-01 2 116101439 116101439 C T DPP10 Silent p.L78L 0.34 TCGA-A7-A26J-01 2 189918668 189918668 G C COL5A2 Missense_Mutation p.P818A 0.32 unknown(0) TCGA-A7-A26J-01 3 58084492 58084492 C A FLNB Missense_Mutation p.T401N 0.10 deleterious(0.02) benign(0.003) TCGA-A7-A26J-01 3 77611806 77611806 C T ROBO2 Missense_Mutation p.S497F 0.40 deleterious(0.04) possibly_damaging(0.788) TCGA-A7-A26J-01 3 9959658 9959658 T G IL17RC Missense_Mutation p.V131G 0.46 tolerated(0.06) benign(0.062) TCGA-A7-A26J-01 5 137519169 137519169 G A KIF20A Nonsense_Mutation p.W346* 0.04 TCGA-A7-A26J-01 6 143748286 143748286 A G ADAT2 3'UTR 0.17 TCGA-A7-A26J-01 6 26271575 26271575 C T HIST1H3G Missense_Mutation p.G13D 0.46 deleterious_low_confidence(0) benign(0.02) TCGA-A7-A26J-01 6 34512093 34512111 GGACTGGGACTCCAGTCCC - SPDEF Frame_Shift_Del p.R41Hfs*66 0.37 TCGA-A7-A26J-01 7 155568164 155568164 A T RBM33 3'UTR 0.47 TCGA-A7-A26J-01 7 44068698 44068698 G - RASA4CP RNA 0.30 TCGA-A7-A26J-01 7 62809679 62809679 C A AC006455.1 5'UTR 0.04 TCGA-A7-A26J-01 8 53853072 53853072 C T NPBWR1 Missense_Mutation p.A202V 0.04 tolerated(0.61) benign(0.041) TCGA-A7-A26J-01 8 97346628 97346628 T G PTDSS1 3'UTR 0.12 TCGA-A7-A26J-01 9 127285049 127285049 C A NR6A1 Nonsense_Mutation p.E460* 0.18 TCGA-A7-A26J-01 9 15232402 15232402 A T TTC39B Intron 0.14 TCGA-A7-A26J-01 9 21480967 21480968 - AT IFNE 3'UTR 0.32 TCGA-A7-A26J-01 9 79119239 79119239 C T GCNT1 3'UTR 0.23 TCGA-A7-A26J-01 X 153759925 153759925 C T G6PD 3'UTR 0.37 TCGA-A7-A26J-01 X 18659994 18659994 T G RS1 3'UTR 0.18 TCGA-A7-A26J-01 X 41082490 41082490 C G USP9X Missense_Mutation p.L2196V 0.23 deleterious(0) probably_damaging(0.952) TCGA-A7-A26J-01 X 47497313 47497313 G C ELK1 Missense_Mutation p.S308C 0.06 deleterious(0.02) benign(0.155) TCGA-A7-A2KD-01 10 50732557 50732557 G C ERCC6-PGBD3 Missense_Mutation p.P307A 0.43 tolerated_low_confidence(0.11) benign(0.064) TCGA-A7-A2KD-01 10 50732756 50732756 G A ERCC6-PGBD3 Silent p.I240I 0.41 TCGA-A7-A2KD-01 10 70056854 70056854 C G PBLD Intron 0.19 TCGA-A7-A2KD-01 10 93768598 93768598 T G BTAF1 Missense_Mutation p.W1276G 0.41 deleterious(0) probably_damaging(1) TCGA-A7-A2KD-01 11 1156604 1156604 C T MUC5AC Silent p.T207T 0.11 TCGA-A7-A2KD-01 11 134239727 134239727 C T GLB1L2 Silent p.G352G 0.15 TCGA-A7-A2KD-01 11 22777476 22777476 G A GAS2 Missense_Mutation p.G234R 0.24 deleterious(0) probably_damaging(1) TCGA-A7-A2KD-01 11 32955429 32955429 T C QSER1 Silent p.G746G 0.37 TCGA-A7-A2KD-01 11 55065032 55065032 T - TRIM51HP RNA 0.44 TCGA-A7-A2KD-01 11 55322053 55322054 - T OR4C15 Frame_Shift_Ins p.G92Wfs*57 0.13 TCGA-A7-A2KD-01 11 58384773 58384773 G C ZFP91 Missense_Mutation p.G436A 0.14 deleterious(0.02) possibly_damaging(0.615) TCGA-A7-A2KD-01 12 113596556 113596556 A T CCDC42B 3'UTR 0.11 TCGA-A7-A2KD-01 13 111077189 111077189 G A COL4A2 Missense_Mutation p.G97R 0.19 probably_damaging(1) TCGA-A7-A2KD-01 14 47310184 47310184 C T MDGA2 3'UTR 0.26 TCGA-A7-A2KD-01 14 54942107 54942107 C T GMFB 3'UTR 0.19 TCGA-A7-A2KD-01 15 25220065 25220065 C T SNRPN Intron 0.17 TCGA-A7-A2KD-01 15 34151848 34151848 G A RYR3 Missense_Mutation p.G4739S 0.19 probably_damaging(0.991) TCGA-A7-A2KD-01 15 39874437 39874437 C T THBS1 Silent p.T37T 0.13 TCGA-A7-A2KD-01 16 67760002 67760002 T C RANBP10 3'UTR 0.52 TCGA-A7-A2KD-01 17 26965606 26965606 G C KIAA0100 Silent p.V428V 0.19 TCGA-A7-A2KD-01 17 36478436 36478436 T A MRPL45 Nonsense_Mutation p.Y293* 0.19 TCGA-A7-A2KD-01 17 7579409 7579410 AG - TP53 Frame_Shift_Del p.L93Vfs*55 0.41 TCGA-A7-A2KD-01 18 67993118 67993118 C T SOCS6 Missense_Mutation p.S405F 0.12 deleterious(0) probably_damaging(0.986) TCGA-A7-A2KD-01 18 67993262 67993262 C T SOCS6 Missense_Mutation p.S453F 0.11 deleterious(0) probably_damaging(0.999) TCGA-A7-A2KD-01 18 67994461 67994461 C T SOCS6 3'UTR 0.19 TCGA-A7-A2KD-01 19 14072670 14072670 C T RFX1 3'UTR 0.96 TCGA-A7-A2KD-01 19 22155166 22155166 T G ZNF208 Missense_Mutation p.K890N 0.21 deleterious(0.04) unknown(0) TCGA-A7-A2KD-01 19 52217306 52217306 G A HAS1 Missense_Mutation p.R371W 0.26 deleterious(0) probably_damaging(0.999) TCGA-A7-A2KD-01 19 629640 629640 A T POLRMT Missense_Mutation p.L241H 0.28 tolerated(0.13) probably_damaging(0.969) TCGA-A7-A2KD-01 1 150444409 150444409 A G RPRD2 Silent p.K995K 0.15 TCGA-A7-A2KD-01 1 150937770 150937770 T A CERS2 3'UTR 0.14 TCGA-A7-A2KD-01 1 152573147 152573147 G T LCE3C 5'UTR 0.36 TCGA-A7-A2KD-01 1 154744819 154744819 G A KCNN3 Silent p.Y360Y 0.15 TCGA-A7-A2KD-01 1 180243844 180243844 C T LHX4 3'UTR 0.58 TCGA-A7-A2KD-01 1 186057750 186057750 C T HMCN1 Missense_Mutation p.S3197L 0.23 probably_damaging(0.993) TCGA-A7-A2KD-01 1 186092173 186092173 C T HMCN1 Missense_Mutation p.P4107L 0.26 benign(0.342) TCGA-A7-A2KD-01 1 225599097 225599097 C T LBR Missense_Mutation p.R377Q 0.29 deleterious(0.02) probably_damaging(1) TCGA-A7-A2KD-01 1 231487101 231487101 C T SPRTN Missense_Mutation p.R168C 0.15 deleterious(0) probably_damaging(0.993) TCGA-A7-A2KD-01 1 23418607 23418607 T C LUZP1 Silent p.E716E 0.25 TCGA-A7-A2KD-01 1 235507642 235507642 G A GGPS1 3'UTR 0.19 TCGA-A7-A2KD-01 1 75685020 75685020 C T SLC44A5 Silent p.A396A 0.12 TCGA-A7-A2KD-01 1 94668512 94668512 C A ARHGAP29 Nonsense_Mutation p.E306* 0.25 TCGA-A7-A2KD-01 22 18978260 18978260 G A DGCR5 RNA 0.15 TCGA-A7-A2KD-01 2 131519756 131519756 G T AMER3 Missense_Mutation p.W37C 0.22 tolerated(0.26) benign(0.023) TCGA-A7-A2KD-01 2 213867917 213867917 A T IKZF2 3'UTR 0.09 TCGA-A7-A2KD-01 3 129389467 129389467 C T TMCC1 Missense_Mutation p.G406E 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-A7-A2KD-01 4 4864485 4864485 G A MSX1 Missense_Mutation p.R176Q 0.15 deleterious(0) probably_damaging(0.994) TCGA-A7-A2KD-01 4 88258484 88258484 G A HSD17B11 Nonsense_Mutation p.Q283* 0.10 TCGA-A7-A2KD-01 6 34502442 34502442 C G PACSIN1 3'UTR 0.24 TCGA-A7-A2KD-01 7 27221331 27221331 A G HOXA11 3'UTR 0.19 TCGA-A7-A2KD-01 7 43482155 43482155 C T HECW1 Silent p.G324G 0.19 TCGA-A7-A2KD-01 8 37556061 37556061 T A ZNF703 Missense_Mutation p.Y548N 0.25 deleterious(0) probably_damaging(0.998) TCGA-A7-A2KD-01 8 92998437 92998437 G A RUNX1T1 Silent p.D409D 0.16 TCGA-A7-A2KD-01 9 139912699 139912699 C T ABCA2 Missense_Mutation p.A642T 0.17 tolerated(0.31) possibly_damaging(0.856) TCGA-A7-A2KD-01 X 125684953 125684953 C G DCAF12L1 3'UTR 0.23 TCGA-A7-A2KD-01 X 12722603 12722603 A T FRMPD4 Missense_Mutation p.K399M 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-A7-A2KD-01 X 134494608 134494608 C T ZNF449 Silent p.F388F 0.08 TCGA-A7-A2KD-01 X 48547822 48547822 C T WAS Silent p.S484S 0.32 TCGA-A7-A3RF-01 10 49985485 49985485 G T WDFY4 Silent p.L1040L 0.09 TCGA-A7-A3RF-01 11 122805129 122805129 A T C11orf63 Missense_Mutation p.N327I 0.39 deleterious(0.02) benign(0.048) TCGA-A7-A3RF-01 11 36615286 36615286 C A RAG2 Missense_Mutation p.V145L 0.39 deleterious(0) probably_damaging(0.956) TCGA-A7-A3RF-01 12 125397154 125397154 C T UBC Silent p.L388L 0.09 TCGA-A7-A3RF-01 12 51758037 51758037 A G GALNT6 Missense_Mutation p.F306S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-A7-A3RF-01 12 7303269 7303269 A G CLSTN3 Missense_Mutation p.N792S 0.42 deleterious(0) probably_damaging(0.971) TCGA-A7-A3RF-01 13 111143635 111143635 G C COL4A2 Silent p.G1134G 0.41 TCGA-A7-A3RF-01 13 49050911 49050911 A - RB1 Frame_Shift_Del p.S866Afs*7 0.10 TCGA-A7-A3RF-01 15 24921008 24921008 G T NPAP1 5'UTR 0.22 TCGA-A7-A3RF-01 15 41828343 41828343 C T RPAP1 Missense_Mutation p.R135H 0.16 deleterious(0.01) benign(0.064) TCGA-A7-A3RF-01 16 314108 314108 G A ITFG3 Missense_Mutation p.A428T 0.40 deleterious(0) probably_damaging(1) TCGA-A7-A3RF-01 16 53526305 53526305 G C AKTIP 3'UTR 0.50 TCGA-A7-A3RF-01 17 17907781 17907781 G A LRRC48 Silent p.L368L 0.29 TCGA-A7-A3RF-01 17 22023517 22023517 C A MTRNR2L1 3'UTR 0.16 TCGA-A7-A3RF-01 17 42928692 42928692 T C EFTUD2 Missense_Mutation p.M957V 0.20 deleterious(0.02) possibly_damaging(0.542) TCGA-A7-A3RF-01 19 47725123 47725123 T C BBC3 Silent p.Q207Q 0.39 TCGA-A7-A3RF-01 19 58384274 58384274 A - ZNF814 Frame_Shift_Del p.Y828* 0.25 TCGA-A7-A3RF-01 1 153122539 153122539 A G SPRR2G Silent p.P16P 0.23 TCGA-A7-A3RF-01 1 161042511 161042511 G A PVRL4 Silent p.T491T 0.41 TCGA-A7-A3RF-01 1 216390733 216390733 G A USH2A Silent p.S1051S 0.16 TCGA-A7-A3RF-01 1 232943640 232943640 T C MAP10 Silent p.N957N 0.39 TCGA-A7-A3RF-01 1 233512266 233512266 C T MLK4 Silent p.D639D 0.38 TCGA-A7-A3RF-01 1 33233706 33233706 C A KIAA1522 Silent p.T150T 0.35 TCGA-A7-A3RF-01 1 34011768 34011768 C T CSMD2 Missense_Mutation p.R2846H 0.33 deleterious(0.03) benign(0.135) TCGA-A7-A3RF-01 1 44877815 44877815 C T RNF220 Missense_Mutation p.L16F 0.17 deleterious(0) possibly_damaging(0.82) TCGA-A7-A3RF-01 1 75672276 75672276 A G SLC44A5 3'UTR 0.09 TCGA-A7-A3RF-01 21 36163190 36163190 C T RUNX1 3'UTR 0.33 TCGA-A7-A3RF-01 2 237150237 237150237 T G ASB18 Intron 0.17 TCGA-A7-A3RF-01 2 31751146 31751146 C T AL133247.2 5'Flank 0.31 TCGA-A7-A3RF-01 2 47672725 47672725 C A MSH2 Missense_Mutation p.P439T 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-A7-A3RF-01 2 61484057 61484057 T C USP34 Missense_Mutation p.E2026G 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A3RF-01 3 108298527 108298527 C A KIAA1524 Silent p.V186V 0.47 TCGA-A7-A3RF-01 4 9784659 9784659 G A DRD5 Missense_Mutation p.V336I 0.10 tolerated(0.25) probably_damaging(0.981) TCGA-A7-A3RF-01 6 127611151 127611151 A G ECHDC1 Silent p.L263L 0.07 TCGA-A7-A3RF-01 6 143075010 143075010 C T HIVEP2 Missense_Mutation p.G2192D 0.13 tolerated(0.37) probably_damaging(1) TCGA-A7-A3RF-01 6 619510 619510 T C EXOC2 Silent p.L152L 0.30 TCGA-A7-A3RF-01 6 64404655 64404655 G C PHF3 Splice_Site p.X894_splice 0.10 TCGA-A7-A3RF-01 7 151879136 151879136 G A KMT2C Nonsense_Mutation p.Q1937* 0.40 TCGA-A7-A3RF-01 8 130789734 130789734 G A GSDMC Missense_Mutation p.R34C 0.32 tolerated(0.14) benign(0.212) TCGA-A7-A3RF-01 9 37349448 37349448 A T ZCCHC7 Missense_Mutation p.H361L 0.09 deleterious(0.03) possibly_damaging(0.495) TCGA-A7-A3RF-01 X 107834821 107834822 - C COL4A5 Frame_Shift_Ins p.G460Rfs*5 0.23 TCGA-A7-A3RF-01 X 30255323 30255323 T C MAGEB3 3'UTR 0.26 TCGA-A7-A3RF-01 X 99849033 99849033 G A TNMD Splice_Site p.X107_splice 0.35 TCGA-A7-A425-01 10 129202640 129202640 C G DOCK1 Missense_Mutation p.P1336A 0.28 deleterious(0.02) possibly_damaging(0.761) TCGA-A7-A425-01 10 134624471 134624471 C T TTC40 Silent p.E2522E 0.20 TCGA-A7-A425-01 10 697170 697170 A G PRR26 Silent p.Q221Q 0.27 TCGA-A7-A425-01 10 95791183 95791183 A G PLCE1 Missense_Mutation p.N127S 0.36 tolerated_low_confidence(0.19) benign(0.008) TCGA-A7-A425-01 13 21417130 21417130 T G XPO4 Silent p.R211R 0.23 TCGA-A7-A425-01 15 43748472 43748472 T A TP53BP1 Missense_Mutation p.E778D 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.64) TCGA-A7-A425-01 16 68847263 68847272 ACTGAAAGTG - CDH1 Frame_Shift_Del p.K397Mfs*17 0.43 TCGA-A7-A425-01 17 39883371 39883371 G A HAP1 Missense_Mutation p.T434M 0.25 deleterious(0.02) benign(0.001) TCGA-A7-A425-01 17 61949664 61949664 C T CSH2 Missense_Mutation p.R159H 0.19 tolerated(0.11) benign(0.002) TCGA-A7-A425-01 17 79410071 79410071 C T RP11-1055B8.7 Missense_Mutation p.R566C 0.27 possibly_damaging(0.855) TCGA-A7-A425-01 18 30260233 30260233 T A KLHL14 Missense_Mutation p.D496V 0.12 deleterious(0) probably_damaging(0.997) TCGA-A7-A425-01 18 5145612 5145612 G T C18orf42 Missense_Mutation p.D53E 0.24 tolerated_low_confidence(0.37) benign(0.014) TCGA-A7-A425-01 19 36273541 36273541 G T ARHGAP33 Missense_Mutation p.V425L 0.34 deleterious_low_confidence(0.01) benign(0.198) TCGA-A7-A425-01 19 37310012 37310012 G A ZNF790 Missense_Mutation p.H412Y 0.18 deleterious(0) benign(0.097) TCGA-A7-A425-01 1 107600598 107600598 T A PRMT6 3'UTR 0.27 TCGA-A7-A425-01 1 116280880 116280880 T C CASQ2 Missense_Mutation p.K166R 0.24 tolerated(0.45) benign(0.058) TCGA-A7-A425-01 1 16560107 16560107 C T RSG1 Missense_Mutation p.G89S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-A7-A425-01 1 19639356 19639357 - AGT PQLC2 5'UTR 0.27 TCGA-A7-A425-01 1 26774101 26774101 T A DHDDS Missense_Mutation p.N164K 0.21 tolerated(0.14) benign(0.054) TCGA-A7-A425-01 1 67450388 67450388 A - MIER1 Frame_Shift_Del p.D502Ifs*12 0.25 TCGA-A7-A425-01 2 220100262 220100262 G A ANKZF1 Silent p.R586R 0.16 TCGA-A7-A425-01 2 39053707 39053707 T A DHX57 Missense_Mutation p.I922F 0.19 deleterious(0) probably_damaging(1) TCGA-A7-A425-01 3 111604096 111604096 A T PHLDB2 Missense_Mutation p.D391V 0.17 deleterious(0) benign(0.323) TCGA-A7-A425-01 3 186572124 186572124 C T ADIPOQ Silent p.Y122Y 0.17 TCGA-A7-A425-01 3 58092450 58092450 C T FLNB Silent p.N597N 0.22 TCGA-A7-A425-01 4 2307064 2307064 T C ZFYVE28 Missense_Mutation p.M335V 0.44 tolerated_low_confidence(0.12) benign(0.033) TCGA-A7-A425-01 5 140536705 140536705 G A PCDHB17 Missense_Mutation p.G377R 0.12 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A7-A425-01 5 1420735 1420735 G A SLC6A3 Silent p.D292D 0.22 TCGA-A7-A425-01 8 145742025 145742025 G A RECQL4 Missense_Mutation p.P160S 0.23 tolerated(0.22) benign(0.023) TCGA-A7-A425-01 8 1497160 1497160 G A DLGAP2 Missense_Mutation p.A101T 0.36 tolerated(0.45) benign(0.003) TCGA-A7-A425-01 8 67923049 67923049 C A PPP1R42 Missense_Mutation p.L151F 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-A7-A425-01 9 136249663 136249663 C T C9orf96 Silent p.Y66Y 0.33 TCGA-A7-A425-01 9 39074000 39074000 C A CNTNAP3 Missense_Mutation p.A1252S 0.09 tolerated(0.09) possibly_damaging(0.831) TCGA-A7-A425-01 X 29973945 29973945 G T IL1RAPL1 3'UTR 0.33 TCGA-A7-A425-01 X 64137066 64137066 G A ZC4H2 3'UTR 0.50 TCGA-A7-A425-01 X 69712379 69712379 A G DLG3 Missense_Mutation p.K569R 0.11 tolerated(1) benign(0.034) TCGA-A7-A4SC-01 10 71129355 71129355 G A HK1 Missense_Mutation p.G288R 0.21 tolerated(0.21) probably_damaging(0.999) TCGA-A7-A4SC-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-A7-A4SC-01 11 63719707 63719707 C A NAA40 Intron 0.22 TCGA-A7-A4SC-01 12 108011110 108011110 C T BTBD11 Missense_Mutation p.R710C 0.23 deleterious(0) probably_damaging(0.991) TCGA-A7-A4SC-01 12 130921495 130921495 C A RIMBP2 Silent p.S649S 0.23 TCGA-A7-A4SC-01 14 59836141 59836141 A G DAAM1 3'UTR 0.19 TCGA-A7-A4SC-01 16 68845617 68845618 AC - CDH1 Frame_Shift_Del p.D288Gfs*4 0.16 TCGA-A7-A4SC-01 18 55282949 55282949 A T NARS Nonsense_Mutation p.L89* 0.09 TCGA-A7-A4SC-01 19 14817558 14817558 C T ZNF333 Missense_Mutation p.R162C 0.18 tolerated_low_confidence(0.05) benign(0.025) TCGA-A7-A4SC-01 19 41596408 41596408 T G CYP2A13 Missense_Mutation p.F198C 0.22 deleterious(0) probably_damaging(0.966) TCGA-A7-A4SC-01 19 56903191 56903191 C T ZNF582 5'UTR 0.24 TCGA-A7-A4SC-01 19 58797478 58797478 C T ZNF8 Missense_Mutation p.P66S 0.15 tolerated(0.52) possibly_damaging(0.78) TCGA-A7-A4SC-01 19 8807880 8807880 C T ACTL9 Missense_Mutation p.R391H 0.23 tolerated(0.12) benign(0.005) TCGA-A7-A4SC-01 19 9869048 9869048 G A ZNF846 Silent p.F235F 0.24 TCGA-A7-A4SC-01 1 120465373 120465373 G C NOTCH2 Missense_Mutation p.R1630G 0.22 deleterious(0.03) probably_damaging(0.939) TCGA-A7-A4SC-01 1 151137721 151137721 G A LYSMD1 Missense_Mutation p.S5F 0.32 deleterious(0.02) unknown(0) TCGA-A7-A4SC-01 1 181765969 181765969 G T CACNA1E Missense_Mutation p.G2125V 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-A7-A4SC-01 1 197026274 197026274 G T F13B Missense_Mutation p.A347E 0.18 tolerated(0.09) benign(0.34) TCGA-A7-A4SC-01 1 238048465 238048465 C T ZP4 Silent p.P437P 0.15 TCGA-A7-A4SC-01 20 13830252 13830252 T A SEL1L2 Splice_Site p.X537_splice 0.21 TCGA-A7-A4SC-01 20 25273190 25273190 C G PYGB Silent p.A706A 0.27 TCGA-A7-A4SC-01 20 56099284 56099284 A C CTCFL Intron 0.15 TCGA-A7-A4SC-01 22 36682850 36682850 C T MYH9 Missense_Mutation p.A1659T 0.41 benign(0.008) TCGA-A7-A4SC-01 22 38710134 38710134 C A CSNK1E Missense_Mutation p.R10L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-A7-A4SC-01 22 39069235 39069235 A - CBY1 Frame_Shift_Del p.K126Nfs*15 0.27 TCGA-A7-A4SC-01 3 108541770 108541770 G T TRAT1 5'UTR 0.24 TCGA-A7-A4SC-01 3 111805270 111805270 C T C3orf52 Missense_Mutation p.P6S 0.23 tolerated_low_confidence(0.15) benign(0.099) TCGA-A7-A4SC-01 3 17052497 17052497 T - PLCL2 Frame_Shift_Del p.Y428Ifs*8 0.19 TCGA-A7-A4SC-01 3 73114906 73114906 A G PPP4R2 3'UTR 0.27 TCGA-A7-A4SC-01 3 95374426 95374426 G T MTHFD2P1 RNA 0.23 TCGA-A7-A4SC-01 4 114267087 114267087 G A ANK2 Missense_Mutation p.R1427Q 0.30 probably_damaging(1) TCGA-A7-A4SC-01 5 133644285 133644285 T G CDKL3 Missense_Mutation p.S339R 0.16 tolerated(0.33) benign(0.005) TCGA-A7-A4SC-01 6 36570636 36570636 G T SRSF3 3'UTR 0.24 TCGA-A7-A4SC-01 7 27148062 27148062 G A HOXA3 Silent p.P268P 0.25 TCGA-A7-A4SC-01 8 141549448 141549448 G A AGO2 Missense_Mutation p.R714W 0.32 deleterious(0) probably_damaging(1) TCGA-A7-A4SC-01 8 61655528 61655528 A T CHD7 Missense_Mutation p.T513S 0.16 benign(0) TCGA-A7-A4SC-01 8 99101489 99101489 C A C8orf47 Missense_Mutation p.Q82K 0.24 tolerated(0.22) possibly_damaging(0.486) TCGA-A7-A4SC-01 X 105179171 105179171 G T NRK Missense_Mutation p.G1171V 0.17 deleterious(0) probably_damaging(0.999) TCGA-A7-A4SC-01 X 129215396 129215396 G A ELF4 5'UTR 0.31 TCGA-A7-A4SC-01 X 21670691 21670691 T C CNKSR2 3'UTR 0.33 TCGA-A7-A4SC-01 X 24006791 24006791 C T KLHL15 Silent p.P354P 0.28 TCGA-A7-A4SD-01 10 105110525 105110527 TCC - PCGF6 In_Frame_Del p.E99del 0.53 TCGA-A7-A4SD-01 10 47087803 47087803 C - NPY4R Frame_Shift_Del p.Q341Sfs*26 0.19 TCGA-A7-A4SD-01 12 14923963 14923963 T A HIST4H4 Missense_Mutation p.H19L 0.16 deleterious(0) unknown(0) TCGA-A7-A4SD-01 12 2910473 2910473 A G FKBP4 Missense_Mutation p.K408R 0.09 tolerated(0.26) probably_damaging(0.995) TCGA-A7-A4SD-01 12 39047620 39047620 C A CPNE8 3'UTR 0.14 TCGA-A7-A4SD-01 13 36049883 36049883 C T MAB21L1 Silent p.R131R 0.36 TCGA-A7-A4SD-01 14 86092197 86092197 A C FLRT2 3'UTR 0.28 TCGA-A7-A4SD-01 15 86807904 86807904 C G AGBL1 Missense_Mutation p.T455R 0.24 tolerated(0.61) benign(0.002) TCGA-A7-A4SD-01 16 13297377 13297377 T C SHISA9 Missense_Mutation p.L273P 0.52 deleterious(0.05) probably_damaging(0.998) TCGA-A7-A4SD-01 16 3064148 3064148 A G CLDN9 3'UTR 0.27 TCGA-A7-A4SD-01 16 31496045 31496045 C G SLC5A2 Missense_Mutation p.R60G 0.10 tolerated(0.1) probably_damaging(0.962) TCGA-A7-A4SD-01 16 52473349 52473349 G A TOX3 Nonsense_Mutation p.Q507* 0.17 TCGA-A7-A4SD-01 16 7382865 7382865 G A RBFOX1 5'UTR 0.46 TCGA-A7-A4SD-01 16 75564779 75564779 C T CHST5 5'UTR 0.28 TCGA-A7-A4SD-01 16 80574938 80574938 C T DYNLRB2 5'UTR 0.32 TCGA-A7-A4SD-01 16 85706814 85706814 T C GSE1 3'UTR 0.45 TCGA-A7-A4SD-01 17 6927077 6927077 C T BCL6B Silent p.N29N 0.20 TCGA-A7-A4SD-01 17 73497206 73497206 G A CASKIN2 Silent p.T1188T 0.44 TCGA-A7-A4SD-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.47 deleterious(0) probably_damaging(0.997) TCGA-A7-A4SD-01 17 77081765 77081765 G A ENGASE Silent p.P588P 0.18 TCGA-A7-A4SD-01 18 47511089 47511089 G A MYO5B Silent p.L315L 0.39 TCGA-A7-A4SD-01 18 5290725 5290725 G C ZBTB14 3'UTR 0.20 TCGA-A7-A4SD-01 19 11325067 11325067 C A DOCK6 Missense_Mutation p.A1408S 0.09 tolerated(0.65) benign(0.002) TCGA-A7-A4SD-01 19 38384389 38384389 C A WDR87 Missense_Mutation p.V613F 0.18 benign(0.405) TCGA-A7-A4SD-01 19 48922957 48922957 G A GRIN2D Silent p.V659V 0.14 TCGA-A7-A4SD-01 19 55879916 55879916 C T IL11 Missense_Mutation p.G68R 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-A7-A4SD-01 1 1120351 1120351 C G TTLL10 Missense_Mutation p.F421L 0.07 deleterious(0) probably_damaging(0.95) TCGA-A7-A4SD-01 1 112042833 112042833 C T ADORA3 Intron 0.18 TCGA-A7-A4SD-01 1 152732300 152732300 A G KPRP Missense_Mutation p.K79R 0.16 tolerated(0.25) benign(0.014) TCGA-A7-A4SD-01 1 159923336 159923336 T A SLAMF9 Missense_Mutation p.N52Y 0.13 deleterious(0.01) possibly_damaging(0.697) TCGA-A7-A4SD-01 1 184760268 184760268 C A FAM129A 3'UTR 0.25 TCGA-A7-A4SD-01 1 214795494 214795494 A G CENPF Missense_Mutation p.N313S 0.23 benign(0.028) TCGA-A7-A4SD-01 1 228285847 228285863 TGTGGCAGACGCAGCCT - ARF1 3'UTR 0.18 TCGA-A7-A4SD-01 1 24861790 24861790 C T RCAN3 3'UTR 0.10 TCGA-A7-A4SD-01 1 47078684 47078684 G A MOB3C Missense_Mutation p.R156C 0.36 deleterious(0.05) benign(0.279) TCGA-A7-A4SD-01 1 90400208 90400208 T C LRRC8D Silent p.V527V 0.19 TCGA-A7-A4SD-01 20 1218796 1218796 G A RAD21L1 Missense_Mutation p.R195Q 0.12 deleterious(0.01) benign(0.11) TCGA-A7-A4SD-01 21 43988519 43988519 C T SLC37A1 Missense_Mutation p.T465M 0.31 deleterious(0) probably_damaging(0.999) TCGA-A7-A4SD-01 22 26291146 26291146 G A MYO18B Missense_Mutation p.D1523N 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-A7-A4SD-01 22 46684349 46684349 G A TTC38 Missense_Mutation p.V316I 0.18 tolerated(0.19) benign(0.015) TCGA-A7-A4SD-01 2 128178906 128178906 C T PROC Missense_Mutation p.R40C 0.17 deleterious(0) possibly_damaging(0.587) TCGA-A7-A4SD-01 2 136379141 136379141 G - R3HDM1 Frame_Shift_Del p.A128Pfs*24 0.08 TCGA-A7-A4SD-01 2 141200073 141200073 C T LRP1B Missense_Mutation p.D3472N 0.31 possibly_damaging(0.555) TCGA-A7-A4SD-01 2 186673617 186673617 A C FSIP2 Missense_Mutation p.K6617N 0.08 possibly_damaging(0.852) TCGA-A7-A4SD-01 2 45169910 45169910 G T SIX3 Nonsense_Mutation p.E223* 0.18 TCGA-A7-A4SD-01 2 61237855 61237855 G C PUS10 Intron 0.32 TCGA-A7-A4SD-01 2 85766317 85766317 C T MAT2A 5'UTR 0.21 TCGA-A7-A4SD-01 3 10491115 10491115 C T ATP2B2 Missense_Mutation p.R38Q 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-A7-A4SD-01 3 15216727 15216727 G A COL6A4P1 RNA 0.37 TCGA-A7-A4SD-01 5 135223721 135223721 G T SLC25A48 Missense_Mutation p.G141V 0.25 tolerated(0.07) benign(0.016) TCGA-A7-A4SD-01 5 140263298 140263298 C T PCDHA13 Missense_Mutation p.A482V 0.23 deleterious_low_confidence(0.03) benign(0.033) TCGA-A7-A4SD-01 5 140798221 140798221 G T PCDHGB7 Missense_Mutation p.K265N 0.20 tolerated(0.57) benign(0.158) TCGA-A7-A4SD-01 5 156907975 156907975 C T ADAM19 Missense_Mutation p.M913I 0.09 tolerated_low_confidence(0.24) benign(0.001) TCGA-A7-A4SD-01 5 17354528 17354528 G A CTD-2139B15.2 RNA 0.39 TCGA-A7-A4SD-01 6 110729556 110729556 C T DDO Missense_Mutation p.G116S 0.38 deleterious(0) probably_damaging(0.987) TCGA-A7-A4SD-01 7 151945694 151945694 G - KMT2C Frame_Shift_Del p.H609Ifs*3 0.35 TCGA-A7-A4SD-01 7 43846680 43846680 T C BLVRA Missense_Mutation p.V246A 0.16 tolerated(0.78) benign(0.007) TCGA-A7-A4SD-01 7 6063343 6063343 A G EIF2AK1 3'UTR 0.12 TCGA-A7-A4SD-01 7 98645333 98645333 C T SMURF1 Missense_Mutation p.E402K 0.31 tolerated(0.6) possibly_damaging(0.824) TCGA-A7-A4SD-01 8 144462047 144462047 G A RHPN1 Missense_Mutation p.V332I 0.18 tolerated(0.12) benign(0.04) TCGA-A7-A4SD-01 8 41122697 41122697 C T SFRP1 Missense_Mutation p.V312M 0.20 deleterious(0.02) benign(0.191) TCGA-A7-A4SD-01 8 81553683 81553683 C T ZNF704 Missense_Mutation p.R386Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-A7-A4SD-01 9 121929581 121929581 A C BRINP1 Silent p.S689S 0.22 TCGA-A7-A4SD-01 9 138395623 138395623 G A MRPS2 Missense_Mutation p.A179T 0.23 tolerated(0.1) benign(0.269) TCGA-A7-A4SD-01 X 101624688 101624688 C A NXF2B Intron 0.13 TCGA-A7-A4SD-01 X 153069686 153069686 G A PDZD4 Missense_Mutation p.R478C 0.12 deleterious(0) probably_damaging(0.991) TCGA-A7-A4SD-01 X 153594795 153594795 A T FLNA Missense_Mutation p.F370Y 0.27 tolerated(0.08) possibly_damaging(0.613) TCGA-A7-A4SE-01 10 20534365 20534365 C T PLXDC2 Silent p.A468A 0.46 TCGA-A7-A4SE-01 10 43619204 43619204 C G RET Missense_Mutation p.L963V 0.17 deleterious(0) probably_damaging(0.995) TCGA-A7-A4SE-01 10 74645883 74645883 C A MCU 3'UTR 0.28 TCGA-A7-A4SE-01 10 82034939 82034939 G T MAT1A Missense_Mutation p.T262N 0.21 deleterious(0) probably_damaging(0.997) TCGA-A7-A4SE-01 10 95326453 95326469 CGCTGCGGGCCGCCAGG - FFAR4 5'UTR 0.59 TCGA-A7-A4SE-01 11 111953199 111953199 C T C11orf57 Nonsense_Mutation p.Q129* 0.09 TCGA-A7-A4SE-01 11 116708076 116708076 C T APOA1 Missense_Mutation p.V10M 0.30 deleterious(0.02) unknown(0) TCGA-A7-A4SE-01 11 124748259 124748259 G A ROBO3 Missense_Mutation p.E1083K 0.65 deleterious(0) benign(0.427) TCGA-A7-A4SE-01 11 58477872 58477872 T C GLYAT Intron 0.48 TCGA-A7-A4SE-01 11 6221358 6221358 C A OR52W1 Missense_Mutation p.T302N 0.27 deleterious(0) probably_damaging(0.994) TCGA-A7-A4SE-01 11 63279229 63279229 G T LGALS12 Silent p.V211V 0.21 TCGA-A7-A4SE-01 11 63487409 63487409 G C RTN3 Missense_Mutation p.D479H 0.29 deleterious(0.03) possibly_damaging(0.711) TCGA-A7-A4SE-01 11 8148332 8148332 C T RIC3 Missense_Mutation p.D182N 0.59 deleterious(0.03) probably_damaging(0.928) TCGA-A7-A4SE-01 11 86126319 86126334 GGCGGGATTTGCAAAT - CCDC81 Frame_Shift_Del p.R552Sfs*20 0.42 TCGA-A7-A4SE-01 11 8737118 8737154 CGGCTCCAGTGGGCTGCCTCTGGGGAGGGTACCTTGG - ST5 Splice_Site p.X614_splice 0.54 TCGA-A7-A4SE-01 12 104174077 104174077 C G NT5DC3 Splice_Site p.X465_splice 0.54 TCGA-A7-A4SE-01 12 51664120 51664120 G A SMAGP 5'UTR 0.62 TCGA-A7-A4SE-01 12 51888749 51888749 C G SLC4A8 Silent p.L930L 0.18 TCGA-A7-A4SE-01 12 6438387 6438387 G C TNFRSF1A 3'UTR 0.15 TCGA-A7-A4SE-01 12 7842582 7842582 A G GDF3 Silent p.C329C 0.37 TCGA-A7-A4SE-01 13 113918947 113918947 A T CUL4A 3'Flank 0.62 TCGA-A7-A4SE-01 13 24411757 24411757 G C MIPEP Missense_Mutation p.L493V 0.35 deleterious(0.04) probably_damaging(0.951) TCGA-A7-A4SE-01 13 42748218 42748218 C T DGKH Missense_Mutation p.L464F 0.13 tolerated(0.71) benign(0.275) TCGA-A7-A4SE-01 13 42894303 42894303 A - AKAP11 3'UTR 0.33 TCGA-A7-A4SE-01 14 101347130 101347130 G A RTL1 Silent p.I1332I 0.06 TCGA-A7-A4SE-01 14 20665929 20665929 G C OR11G2 Missense_Mutation p.L145F 0.39 tolerated(0.12) benign(0.216) TCGA-A7-A4SE-01 14 32561632 32561632 T A ARHGAP5 Nonsense_Mutation p.L586* 0.47 TCGA-A7-A4SE-01 14 32562165 32562165 G C ARHGAP5 Missense_Mutation p.V764L 0.62 tolerated(0.91) benign(0.005) TCGA-A7-A4SE-01 15 101717336 101717336 T A CHSY1 3'UTR 0.13 TCGA-A7-A4SE-01 15 25585358 25585358 A T UBE3A Missense_Mutation p.V794D 0.17 deleterious(0) probably_damaging(0.983) TCGA-A7-A4SE-01 15 38645798 38645798 C G SPRED1 3'UTR 0.43 TCGA-A7-A4SE-01 15 49090185 49090185 G A CEP152 Missense_Mutation p.L51F 0.16 tolerated(0.19) probably_damaging(0.93) TCGA-A7-A4SE-01 15 85402487 85402487 C G ALPK3 Missense_Mutation p.I1479M 0.60 deleterious(0) probably_damaging(1) TCGA-A7-A4SE-01 15 86791010 86791010 G C AGBL1 Missense_Mutation p.R166P 0.16 deleterious(0) possibly_damaging(0.868) TCGA-A7-A4SE-01 15 91341532 91341532 G C BLM Missense_Mutation p.R1108T 0.06 deleterious(0) probably_damaging(0.994) TCGA-A7-A4SE-01 15 99670771 99670771 G - SYNM Frame_Shift_Del p.R736Gfs*17 0.45 TCGA-A7-A4SE-01 16 23592425 23592425 C G NDUFAB1 3'Flank 0.29 TCGA-A7-A4SE-01 16 2378577 2378577 C A ABCA3 5'UTR 0.33 TCGA-A7-A4SE-01 16 74425709 74425709 C A NPIPB15 Missense_Mutation p.P355T 0.20 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-A7-A4SE-01 17 18082428 18082428 C T MYO15A 3'UTR 0.55 TCGA-A7-A4SE-01 17 25621392 25621392 G A WSB1 5'UTR 0.53 TCGA-A7-A4SE-01 17 4192684 4192691 CACATCAC - UBE2G1 Frame_Shift_Del p.G87Vfs*7 0.56 TCGA-A7-A4SE-01 17 65908221 65908221 A G BPTF Missense_Mutation p.I1407M 0.29 benign(0.274) TCGA-A7-A4SE-01 17 74273320 74273320 T C QRICH2 Missense_Mutation p.Y1564C 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-A7-A4SE-01 17 7577156 7577156 C A TP53 Splice_Site p.X261_splice 0.65 TCGA-A7-A4SE-01 17 79226306 79226306 G A SLC38A10 Missense_Mutation p.S545L 0.56 tolerated(0.13) benign(0.033) TCGA-A7-A4SE-01 17 79768908 79768908 G C GCGR Missense_Mutation p.K98N 0.57 deleterious(0) probably_damaging(0.995) TCGA-A7-A4SE-01 18 28898251 28898251 G C DSG1 5'UTR 0.08 TCGA-A7-A4SE-01 18 51681195 51681195 G T MBD2 3'UTR 0.41 TCGA-A7-A4SE-01 19 11289299 11289299 G T KANK2 Silent p.T449T 0.34 TCGA-A7-A4SE-01 19 12885350 12885350 A - HOOK2 Intron 0.26 TCGA-A7-A4SE-01 19 14876501 14876501 G C EMR2 Missense_Mutation p.I250M 0.12 tolerated(0.22) benign(0.01) TCGA-A7-A4SE-01 19 18557189 18557189 C T ELL Missense_Mutation p.R545H 0.50 tolerated(0.21) benign(0.023) TCGA-A7-A4SE-01 19 22952765 22952765 T A ZNF99 Intron 0.38 TCGA-A7-A4SE-01 19 41749573 41749573 G A AXL Missense_Mutation p.V500M 0.31 deleterious(0) possibly_damaging(0.613) TCGA-A7-A4SE-01 19 48024498 48024498 C T ZNF541 Missense_Mutation p.G1361S 0.12 tolerated_low_confidence(0.23) benign(0.136) TCGA-A7-A4SE-01 19 48043463 48043463 C A ZNF541 Missense_Mutation p.W864C 0.30 deleterious(0) probably_damaging(0.999) TCGA-A7-A4SE-01 19 48205643 48205643 G A GLTSCR1 Missense_Mutation p.G1552S 0.15 probably_damaging(1) TCGA-A7-A4SE-01 19 56896446 56896446 C G ZNF582 Missense_Mutation p.E114Q 0.11 tolerated(0.1) benign(0.112) TCGA-A7-A4SE-01 19 57931914 57931914 C T ZNF17 Missense_Mutation p.H352Y 0.24 deleterious(0) probably_damaging(0.98) TCGA-A7-A4SE-01 1 110294670 110294680 ACTCGTACAAG - EPS8L3 Frame_Shift_Del p.L459* 0.27 TCGA-A7-A4SE-01 1 116519207 116519207 G C SLC22A15 5'UTR 0.26 TCGA-A7-A4SE-01 1 150997190 150997190 T G PRUNE Missense_Mutation p.S147A 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-A7-A4SE-01 1 151780109 151780109 G A RORC Silent p.L466L 0.05 TCGA-A7-A4SE-01 1 151993671 151993671 C T NBPF18P RNA 0.14 TCGA-A7-A4SE-01 1 152329692 152329692 C G FLG2 Missense_Mutation p.W190C 0.17 unknown(0) TCGA-A7-A4SE-01 1 152732876 152732876 C A KPRP Missense_Mutation p.P271Q 0.06 deleterious(0.02) probably_damaging(0.991) TCGA-A7-A4SE-01 1 152785546 152785546 C T LCE1B 3'UTR 0.07 TCGA-A7-A4SE-01 1 153043071 153043071 C G SPRR2B 3'UTR 0.51 TCGA-A7-A4SE-01 1 158592829 158592829 C T SPTA1 Missense_Mutation p.E2022K 0.57 tolerated(0.58) benign(0.038) TCGA-A7-A4SE-01 1 19166499 19166499 G C TAS1R2 Missense_Mutation p.T705S 0.33 tolerated(0.16) benign(0.34) TCGA-A7-A4SE-01 1 201858667 201858681 CTGCTACCATCGGTA - SHISA4 In_Frame_Del p.Y58_C62del 0.26 TCGA-A7-A4SE-01 1 202155706 202155706 A T PTPRVP RNA 0.11 TCGA-A7-A4SE-01 1 208202392 208202392 G C PLXNA2 Intron 0.07 TCGA-A7-A4SE-01 1 229676430 229676430 T C ABCB10 Missense_Mutation p.K376E 0.17 tolerated(0.09) benign(0.063) TCGA-A7-A4SE-01 1 32799611 32799611 C T MARCKSL1 3'UTR 0.17 TCGA-A7-A4SE-01 1 35658567 35658567 G T SFPQ Silent p.L28L 0.40 TCGA-A7-A4SE-01 1 46507409 46507409 G A PIK3R3 3'UTR 0.40 TCGA-A7-A4SE-01 1 6489937 6489937 G C ESPN Intron 0.32 TCGA-A7-A4SE-01 1 89426969 89426969 A T CCBL2 Missense_Mutation p.V223E 0.32 deleterious(0) probably_damaging(0.998) TCGA-A7-A4SE-01 1 94982671 94982671 G A ABCD3 Missense_Mutation p.E656K 0.08 deleterious(0.03) benign(0.24) TCGA-A7-A4SE-01 20 1905491 1905491 C T SIRPA Missense_Mutation p.A390V 0.30 tolerated(0.7) probably_damaging(0.935) TCGA-A7-A4SE-01 20 30422261 30422261 C A MYLK2 3'UTR 0.26 TCGA-A7-A4SE-01 20 32677589 32677589 C A EIF2S2 Missense_Mutation p.G317C 0.15 deleterious(0) possibly_damaging(0.884) TCGA-A7-A4SE-01 20 33095873 33095873 T G ITCH 3'Flank 0.17 TCGA-A7-A4SE-01 20 34740938 34740938 C G EPB41L1 5'Flank 0.45 TCGA-A7-A4SE-01 21 31993161 31993161 C T KRTAP20-4 3'UTR 0.34 TCGA-A7-A4SE-01 22 17600172 17600172 A C CECR6 3'UTR 0.08 TCGA-A7-A4SE-01 2 141457840 141457840 C T LRP1B Missense_Mutation p.D2260N 0.18 possibly_damaging(0.539) TCGA-A7-A4SE-01 2 158283926 158283926 C G CYTIP Missense_Mutation p.E161D 0.09 tolerated(0.13) possibly_damaging(0.527) TCGA-A7-A4SE-01 2 162087687 162087687 C G TANK Missense_Mutation p.D242E 0.24 tolerated(0.21) benign(0.115) TCGA-A7-A4SE-01 2 189849533 189849533 G C COL3A1 Missense_Mutation p.D43H 0.20 unknown(0) TCGA-A7-A4SE-01 2 189854152 189854152 C T COL3A1 Missense_Mutation p.P223S 0.24 unknown(0) TCGA-A7-A4SE-01 2 207564451 207564451 C A DYTN Missense_Mutation p.R240I 0.40 deleterious(0) probably_damaging(1) TCGA-A7-A4SE-01 2 210782505 210782505 C G UNC80 Silent p.A1612A 0.32 TCGA-A7-A4SE-01 2 211481258 211481258 C G CPS1 Missense_Mutation p.L900V 0.16 tolerated(0.22) benign(0.004) TCGA-A7-A4SE-01 2 74459643 74459643 C G SLC4A5 Missense_Mutation p.E909D 0.17 deleterious(0) probably_damaging(0.927) TCGA-A7-A4SE-01 2 98274896 98274896 G C ACTR1B Missense_Mutation p.I217M 0.18 tolerated(0.1) benign(0.296) TCGA-A7-A4SE-01 3 128199595 128199595 C G GATA2 3'UTR 0.12 TCGA-A7-A4SE-01 3 137717874 137717874 G T CLDN18 Missense_Mutation p.R55L 0.31 tolerated(0.38) benign(0.168) TCGA-A7-A4SE-01 3 137717875 137717875 A T CLDN18 Silent p.R55R 0.32 TCGA-A7-A4SE-01 3 142095339 142095339 C G XRN1 Missense_Mutation p.G938A 0.14 tolerated(0.16) benign(0.131) TCGA-A7-A4SE-01 3 1427412 1427412 G A CNTN6 Missense_Mutation p.V879I 0.33 deleterious(0.04) benign(0.171) TCGA-A7-A4SE-01 3 167507036 167507036 T A SERPINI1 Silent p.T40T 0.06 TCGA-A7-A4SE-01 3 194124803 194124803 C T ATP13A3 3'UTR 0.40 TCGA-A7-A4SE-01 3 52821106 52821106 C T ITIH1 Missense_Mutation p.P627S 0.11 tolerated(0.1) benign(0.057) TCGA-A7-A4SE-01 4 121957228 121957228 G T NDNF 3'UTR 0.36 TCGA-A7-A4SE-01 4 13605527 13605527 C T BOD1L1 Silent p.E999E 0.19 TCGA-A7-A4SE-01 4 52752750 52752757 AGGCCCTG - DCUN1D4 Frame_Shift_Del p.G121Rfs*7 0.37 TCGA-A7-A4SE-01 4 54327695 54327695 A G LNX1 Missense_Mutation p.I653T 0.18 deleterious(0) probably_damaging(0.999) TCGA-A7-A4SE-01 5 148421116 148421116 C T SH3TC2 Silent p.L198L 0.12 TCGA-A7-A4SE-01 5 159821012 159821012 C T C5orf54 Missense_Mutation p.A496T 0.55 tolerated(0.06) benign(0.002) TCGA-A7-A4SE-01 5 160717067 160717067 C A GABRB2 3'UTR 0.50 TCGA-A7-A4SE-01 5 179528345 179528345 C G RASGEF1C 3'UTR 0.19 TCGA-A7-A4SE-01 5 73931271 73931271 C A ENC1 Missense_Mutation p.G347V 0.80 deleterious(0.04) probably_damaging(1) TCGA-A7-A4SE-01 6 119136169 119136169 T G MCM9 Silent p.R1084R 0.32 TCGA-A7-A4SE-01 6 135271075 135271075 C T ALDH8A1 Silent p.V39V 0.23 TCGA-A7-A4SE-01 6 147123685 147123685 G A ADGB Intron 0.11 TCGA-A7-A4SE-01 6 147123705 147123705 A G ADGB Intron 0.13 TCGA-A7-A4SE-01 6 150244157 150244157 G C RAET1G 5'UTR 0.17 TCGA-A7-A4SE-01 6 33382315 33382315 A G PHF1 Missense_Mutation p.K313R 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-A7-A4SE-01 6 33747884 33747884 C T LEMD2 Missense_Mutation p.G335S 0.12 deleterious(0) probably_damaging(1) TCGA-A7-A4SE-01 6 51776625 51776625 A T PKHD1 Silent p.V2154V 0.44 TCGA-A7-A4SE-01 6 53784344 53784344 G A LRRC1 Silent p.L385L 0.32 TCGA-A7-A4SE-01 6 7583868 7583868 C T DSP Silent p.L2125L 0.12 TCGA-A7-A4SE-01 6 96660530 96660530 T C FUT9 3'UTR 0.37 TCGA-A7-A4SE-01 7 105148722 105148722 C G PUS7 Missense_Mutation p.D80H 0.04 deleterious(0.02) benign(0.081) TCGA-A7-A4SE-01 7 134849503 134849503 G C TMEM140 Missense_Mutation p.A104P 0.72 deleterious(0.02) probably_damaging(0.964) TCGA-A7-A4SE-01 7 13940403 13940403 C A ETV1 Missense_Mutation p.R391L 0.41 deleterious(0) probably_damaging(0.91) TCGA-A7-A4SE-01 7 141738387 141738387 G A MGAM Missense_Mutation p.G763D 0.61 deleterious(0.01) possibly_damaging(0.64) TCGA-A7-A4SE-01 7 150644765 150644765 C G KCNH2 Missense_Mutation p.G965A 0.12 tolerated(0.32) benign(0.066) TCGA-A7-A4SE-01 7 1784920 1784920 T A ELFN1 Missense_Mutation p.Y230N 0.46 tolerated(0.37) benign(0.001) TCGA-A7-A4SE-01 7 44919050 44919050 C G PURB 3'UTR 0.14 TCGA-A7-A4SE-01 8 106815176 106815176 G T ZFPM2 Nonsense_Mutation p.E956* 0.22 TCGA-A7-A4SE-01 8 145662447 145662447 C G TONSL Missense_Mutation p.W563C 0.11 deleterious(0) probably_damaging(1) TCGA-A7-A4SE-01 8 145738069 145738069 C G RECQL4 Silent p.L947L 0.31 TCGA-A7-A4SE-01 8 23005964 23005965 TG - TNFRSF10D Frame_Shift_Del p.T119Sfs*3 0.34 TCGA-A7-A4SE-01 8 38239470 38239470 T C WHSC1L1 5'UTR 0.07 TCGA-A7-A4SE-01 8 82359614 82359614 T C PMP2 Missense_Mutation p.N3S 0.16 deleterious(0.02) benign(0) TCGA-A7-A4SE-01 8 93897179 93897179 T A AC117834.1 Missense_Mutation p.L46H 0.31 unknown(0) TCGA-A7-A4SE-01 8 97155031 97155031 T A GDF6 3'UTR 0.17 TCGA-A7-A4SE-01 9 109686591 109686591 C T ZNF462 Missense_Mutation p.A133V 0.43 possibly_damaging(0.483) TCGA-A7-A4SE-01 9 112898773 112898773 C T PALM2-AKAP2 Silent p.L317L 0.33 TCGA-A7-A4SE-01 9 12708043 12708043 A G TYRP1 Silent p.R436R 0.21 TCGA-A7-A4SE-01 9 139616392 139616392 G A FAM69B Missense_Mutation p.G73E 0.61 deleterious(0) possibly_damaging(0.842) TCGA-A7-A4SE-01 9 34723918 34723918 C T FAM205A Missense_Mutation p.D1107N 0.08 tolerated(0.11) benign(0.002) TCGA-A7-A4SE-01 9 98238441 98238441 C A PTCH1 Missense_Mutation p.D535Y 0.57 deleterious(0) possibly_damaging(0.545) TCGA-A7-A4SE-01 X 101826461 101826461 A C NXF4 RNA 0.38 TCGA-A7-A4SE-01 X 118540557 118540557 A T SLC25A43 Missense_Mutation p.Q137L 0.34 deleterious(0) probably_damaging(0.996) TCGA-A7-A4SE-01 X 119007279 119007279 G A NDUFA1 Missense_Mutation p.A39T 0.14 deleterious(0.05) benign(0.246) TCGA-A7-A4SE-01 X 155010116 155010116 A G SPRY3 3'UTR 0.19 TCGA-A7-A4SE-01 X 24721368 24721368 G C POLA1 Missense_Mutation p.V51L 0.24 tolerated(0.08) benign(0.349) TCGA-A7-A4SE-01 X 37699814 37699814 A T DYNLT3 3'UTR 0.30 TCGA-A7-A4SE-01 X 48053639 48053639 G C SSX5 Missense_Mutation p.P110R 0.04 deleterious(0.01) possibly_damaging(0.696) TCGA-A7-A4SE-01 X 49143790 49143790 G A PPP1R3F 3'UTR 0.36 TCGA-A7-A4SE-01 X 51234431 51234431 C G NUDT11 3'UTR 0.30 TCGA-A7-A4SE-01 X 5809596 5809596 G A NLGN4X 3'UTR 0.26 TCGA-A7-A56D-01 10 126681266 126681266 G A CTBP2 Silent p.Y925Y 0.18 TCGA-A7-A56D-01 10 13222545 13222545 G A MCM10 Missense_Mutation p.E291K 0.11 deleterious(0.03) possibly_damaging(0.499) TCGA-A7-A56D-01 10 13323039 13323039 G A PHYH Silent p.I300I 0.08 TCGA-A7-A56D-01 10 21147259 21147259 T C NEBL Silent p.K271K 0.07 TCGA-A7-A56D-01 10 22675874 22675874 G A SPAG6 Missense_Mutation p.D222N 0.12 deleterious(0.05) benign(0.424) TCGA-A7-A56D-01 10 64958450 64958451 - AT JMJD1C Frame_Shift_Ins p.G1772Mfs*14 0.19 TCGA-A7-A56D-01 11 102667427 102667427 T A MMP1 Missense_Mutation p.D198V 0.07 deleterious(0) probably_damaging(0.998) TCGA-A7-A56D-01 11 119213390 119213390 C T MFRP Missense_Mutation p.G435S 0.48 tolerated(0.75) benign(0.003) TCGA-A7-A56D-01 11 1255768 1255768 C T MUC5B Missense_Mutation p.H830Y 0.27 unknown(0) TCGA-A7-A56D-01 11 17623848 17623848 G A OTOG Silent p.V1279V 0.25 TCGA-A7-A56D-01 11 22261146 22261146 A G ANO5 Missense_Mutation p.N265S 0.26 tolerated(0.52) benign(0.01) TCGA-A7-A56D-01 11 59603299 59603299 C T GIF Missense_Mutation p.R352H 0.08 tolerated(0.07) benign(0.002) TCGA-A7-A56D-01 11 68305343 68305343 G C PPP6R3 Missense_Mutation p.E71Q 0.29 deleterious(0) probably_damaging(0.983) TCGA-A7-A56D-01 11 68305348 68305348 G A PPP6R3 Silent p.K72K 0.30 TCGA-A7-A56D-01 11 73687705 73687705 C T UCP2 Silent p.L205L 0.16 TCGA-A7-A56D-01 12 102224414 102224414 G A GNPTAB Silent p.L14L 0.33 TCGA-A7-A56D-01 12 107168437 107168437 G A RIC8B 5'UTR 0.35 TCGA-A7-A56D-01 12 123497206 123497206 G A PITPNM2 Silent p.P123P 0.32 TCGA-A7-A56D-01 12 132626138 132626138 G A DDX51 Missense_Mutation p.R337C 0.39 tolerated(0.19) benign(0.021) TCGA-A7-A56D-01 12 133312092 133312092 C T ANKLE2 Missense_Mutation p.D534N 0.20 deleterious(0.03) possibly_damaging(0.649) TCGA-A7-A56D-01 12 49579289 49579289 G C TUBA1A Missense_Mutation p.S287C 0.04 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-A7-A56D-01 12 52714937 52714937 G A KRT83 Silent p.A61A 0.09 TCGA-A7-A56D-01 12 56478957 56478957 A T ERBB3 Missense_Mutation p.Q138L 0.31 deleterious(0.02) benign(0.118) TCGA-A7-A56D-01 12 6935845 6935845 G A GPR162 Missense_Mutation p.D415N 0.07 deleterious(0) possibly_damaging(0.879) TCGA-A7-A56D-01 12 6947182 6947182 C T LEPREL2 Silent p.N629N 0.38 TCGA-A7-A56D-01 12 81839411 81839411 G C PPFIA2 Nonsense_Mutation p.S165* 0.29 TCGA-A7-A56D-01 12 91371965 91371965 C G EPYC Missense_Mutation p.Q80H 0.18 tolerated(0.15) benign(0.079) TCGA-A7-A56D-01 14 104552103 104552103 C T ASPG 5'UTR 0.26 TCGA-A7-A56D-01 14 24026483 24026483 G C THTPA Missense_Mutation p.E173Q 0.22 deleterious(0.01) benign(0.396) TCGA-A7-A56D-01 14 36221341 36221341 C G RALGAPA1 Missense_Mutation p.E231Q 0.31 deleterious(0.04) possibly_damaging(0.87) TCGA-A7-A56D-01 14 51189176 51189176 C T NIN 3'Flank 0.25 TCGA-A7-A56D-01 14 76928925 76928925 C T ESRRB Silent p.C145C 0.42 TCGA-A7-A56D-01 14 88974301 88974301 T C PTPN21 Silent p.E138E 0.36 TCGA-A7-A56D-01 14 93534384 93534384 G A ITPK1 Intron 0.39 TCGA-A7-A56D-01 15 27725920 27725920 G A GABRG3 Silent p.V233V 0.24 TCGA-A7-A56D-01 15 90176415 90176415 C T KIF7 Missense_Mutation p.R892H 0.12 deleterious(0.02) probably_damaging(0.985) TCGA-A7-A56D-01 16 2134598 2134598 C T TSC2 Nonsense_Mutation p.R1459* 0.29 TCGA-A7-A56D-01 16 67281298 67281298 C A FHOD1 Missense_Mutation p.D6Y 0.14 deleterious_low_confidence(0) benign(0.44) TCGA-A7-A56D-01 16 69152913 69152913 G C CHTF8 Silent p.L473L 0.08 TCGA-A7-A56D-01 17 11827208 11827208 G A DNAH9 Missense_Mutation p.E3943K 0.05 possibly_damaging(0.899) TCGA-A7-A56D-01 17 26881182 26881182 C G PIGS 3'UTR 0.35 TCGA-A7-A56D-01 17 27076034 27076034 G A TRAF4 Silent p.L284L 0.15 TCGA-A7-A56D-01 17 39340673 39340673 G A KRTAP4-1 Missense_Mutation p.S145F 0.37 deleterious(0.03) unknown(0) TCGA-A7-A56D-01 17 40821596 40821596 C T PLEKHH3 Missense_Mutation p.G686E 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-A7-A56D-01 17 42398807 42398807 G C SLC25A39 Missense_Mutation p.A171G 0.44 deleterious(0.02) possibly_damaging(0.859) TCGA-A7-A56D-01 17 61772195 61772195 C T MAP3K3 3'UTR 0.12 TCGA-A7-A56D-01 17 61910318 61910318 G A SMARCD2 Silent p.L526L 0.18 TCGA-A7-A56D-01 17 61937343 61937343 C G TCAM1P RNA 0.09 TCGA-A7-A56D-01 17 62025337 62025337 G A SCN4A Silent p.I1077I 0.49 TCGA-A7-A56D-01 17 62026001 62026001 G A SCN4A Silent p.V1038V 0.46 TCGA-A7-A56D-01 17 62551044 62551044 T C SMURF2 Missense_Mutation p.I560V 0.63 tolerated(1) benign(0) TCGA-A7-A56D-01 17 70642717 70642717 C T SLC39A11 3'UTR 0.52 TCGA-A7-A56D-01 17 7250503 7250503 G A ACAP1 Missense_Mutation p.E429K 0.09 tolerated(0.05) possibly_damaging(0.848) TCGA-A7-A56D-01 17 72769777 72769777 G A NAT9 Missense_Mutation p.S43L 0.31 deleterious(0) probably_damaging(1) TCGA-A7-A56D-01 17 7577027 7577027 G - TP53 Frame_Shift_Del p.T304Ifs*41 0.34 TCGA-A7-A56D-01 18 2595498 2595498 G A NDC80 Missense_Mutation p.E367K 0.23 deleterious(0.04) benign(0.414) TCGA-A7-A56D-01 18 34367018 34367018 T A TPGS2 Nonsense_Mutation p.R228* 0.29 TCGA-A7-A56D-01 18 72223614 72223614 C T CNDP1 Silent p.R22R 0.32 TCGA-A7-A56D-01 19 16254510 16254510 T A HSH2D 5'UTR 0.08 TCGA-A7-A56D-01 19 16874670 16874670 C T NWD1 Missense_Mutation p.T722M 0.06 deleterious(0.04) benign(0.247) TCGA-A7-A56D-01 19 17894951 17894951 G C FCHO1 Missense_Mutation p.W711C 0.06 deleterious(0) probably_damaging(1) TCGA-A7-A56D-01 19 19035754 19035754 C T DDX49 Silent p.I331I 0.30 TCGA-A7-A56D-01 19 37879510 37879510 A G ZNF527 Missense_Mutation p.I187V 0.47 tolerated(0.65) benign(0) TCGA-A7-A56D-01 19 39062746 39062746 T A RYR1 Missense_Mutation p.W4612R 0.09 unknown(0) TCGA-A7-A56D-01 19 44351580 44351580 C T ZNF283 Missense_Mutation p.S276L 0.21 deleterious(0.01) benign(0.123) TCGA-A7-A56D-01 19 44470975 44470975 C T ZNF221 Nonsense_Mutation p.Q441* 0.21 TCGA-A7-A56D-01 19 44570471 44570471 G C ZNF223 Missense_Mutation p.D164H 0.27 deleterious(0.04) possibly_damaging(0.808) TCGA-A7-A56D-01 19 46973575 46973575 G C PNMAL1 Missense_Mutation p.R240G 0.30 tolerated(0.2) benign(0.433) TCGA-A7-A56D-01 19 54209562 54209562 C T MIR526A1 RNA 0.32 TCGA-A7-A56D-01 19 54676942 54676942 C T TMC4 5'UTR 0.17 TCGA-A7-A56D-01 19 57648324 57648324 G A ZIM3 Missense_Mutation p.T53I 0.08 tolerated(0.38) benign(0.278) TCGA-A7-A56D-01 19 57888790 57888790 T A ZNF547 Missense_Mutation p.V149D 0.19 tolerated(0.09) benign(0.397) TCGA-A7-A56D-01 19 6971251 6971251 G A EMR4P RNA 0.19 TCGA-A7-A56D-01 19 7117096 7117096 G A INSR Silent p.L1374L 0.09 TCGA-A7-A56D-01 1 102278550 102278550 G A OLFM3 Intron 0.08 TCGA-A7-A56D-01 1 114523992 114523992 C T OLFML3 Silent p.I274I 0.26 TCGA-A7-A56D-01 1 1431237 1431237 G C ATAD3B 3'UTR 0.26 TCGA-A7-A56D-01 1 151992710 151992710 C G NBPF18P Intron 0.11 TCGA-A7-A56D-01 1 152276932 152276932 C T FLG Missense_Mutation p.R3477H 0.07 unknown(0) TCGA-A7-A56D-01 1 153043174 153043174 G A SPRR2B Nonsense_Mutation p.Q48* 0.16 TCGA-A7-A56D-01 1 155829491 155829491 G T SYT11 5'UTR 0.16 TCGA-A7-A56D-01 1 159906283 159906283 G A IGSF9 Silent p.I193I 0.06 TCGA-A7-A56D-01 1 162551162 162551162 C G UAP1 Silent p.V249V 0.15 TCGA-A7-A56D-01 1 165378812 165378812 G A RXRG Silent p.V343V 0.17 TCGA-A7-A56D-01 1 16957594 16957594 G C CROCCP2 RNA 0.07 TCGA-A7-A56D-01 1 179851716 179851716 G A TOR1AIP1 Missense_Mutation p.E27K 0.18 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-A7-A56D-01 1 180063698 180063698 G A CEP350 Missense_Mutation p.E2820K 0.19 benign(0.371) TCGA-A7-A56D-01 1 183905622 183905623 - TCTTAAA COLGALT2 3'UTR 0.26 TCGA-A7-A56D-01 1 186010160 186010160 C T HMCN1 Nonsense_Mutation p.R2066* 0.44 TCGA-A7-A56D-01 1 201196213 201196213 G A IGFN1 Missense_Mutation p.D3664N 0.28 possibly_damaging(0.872) TCGA-A7-A56D-01 1 210857193 210857193 G T KCNH1 Missense_Mutation p.F800L 0.16 tolerated(0.66) benign(0) TCGA-A7-A56D-01 1 230916316 230916316 C T CAPN9 Missense_Mutation p.T448M 0.07 deleterious(0) possibly_damaging(0.864) TCGA-A7-A56D-01 1 234593419 234593419 C A TARBP1 Missense_Mutation p.W572C 0.12 deleterious(0) probably_damaging(0.99) TCGA-A7-A56D-01 1 248402479 248402479 C T OR2M4 Silent p.F83F 0.17 TCGA-A7-A56D-01 1 40033473 40033473 C T PABPC4 Missense_Mutation p.E308K 0.13 tolerated(0.06) probably_damaging(0.951) TCGA-A7-A56D-01 1 47607825 47607825 G A CYP4A22 Missense_Mutation p.R143Q 0.24 deleterious(0) possibly_damaging(0.477) TCGA-A7-A56D-01 1 67293563 67293563 C A WDR78 Nonsense_Mutation p.E682* 0.16 TCGA-A7-A56D-01 1 94019223 94019223 C A FNBP1L 3'UTR 0.07 TCGA-A7-A56D-01 1 94019727 94019727 C T FNBP1L 3'UTR 0.13 TCGA-A7-A56D-01 20 12989859 12989859 A G SPTLC3 5'UTR 0.22 TCGA-A7-A56D-01 20 18474699 18474699 G A RBBP9 Nonsense_Mutation p.R51* 0.18 TCGA-A7-A56D-01 20 2688646 2688646 C T EBF4 Silent p.L152L 0.17 TCGA-A7-A56D-01 20 31825887 31825887 G A BPIFA1 Missense_Mutation p.G63S 0.14 deleterious(0.04) probably_damaging(0.92) TCGA-A7-A56D-01 20 39316455 39316455 G T MAFB 3'UTR 0.20 TCGA-A7-A56D-01 20 9049813 9049813 C G AL121898.1 5'Flank 0.21 TCGA-A7-A56D-01 21 31744552 31744552 C T KRTAP13-2 5'UTR 0.06 TCGA-A7-A56D-01 21 37661476 37661476 C A DOPEY2 Missense_Mutation p.P2163T 0.39 deleterious(0) probably_damaging(1) TCGA-A7-A56D-01 21 45826557 45826557 C G TRPM2 Missense_Mutation p.I957M 0.21 deleterious(0) probably_damaging(0.991) TCGA-A7-A56D-01 22 21538410 21538410 C T FAM230B RNA 0.25 TCGA-A7-A56D-01 2 149539235 149539235 G A EPC2 Silent p.E581E 0.39 TCGA-A7-A56D-01 2 178085032 178085032 T C HNRNPA3 3'Flank 0.29 TCGA-A7-A56D-01 2 179605742 179605742 G A TTN Missense_Mutation p.T4073M 0.23 TCGA-A7-A56D-01 2 234622410 234622410 G A UGT1A5 Missense_Mutation p.R258Q 0.07 deleterious(0.01) possibly_damaging(0.844) TCGA-A7-A56D-01 2 241513717 241513717 G A RNPEPL1 Missense_Mutation p.E145K 0.10 deleterious(0) probably_damaging(0.999) TCGA-A7-A56D-01 2 241631539 241631539 G A AQP12A Missense_Mutation p.D58N 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-A7-A56D-01 2 242046130 242046130 C T PASK Missense_Mutation p.V1282I 0.40 tolerated(0.53) benign(0.023) TCGA-A7-A56D-01 2 24362275 24362275 G A FAM228B Silent p.E132E 0.27 TCGA-A7-A56D-01 2 48741861 48741861 C T PPP1R21 Missense_Mutation p.S774F 0.18 deleterious(0.01) unknown(0) TCGA-A7-A56D-01 2 69702889 69702889 G C AAK1 3'UTR 0.33 TCGA-A7-A56D-01 2 71896248 71896248 C T DYSF Silent p.F1851F 0.05 TCGA-A7-A56D-01 2 97302708 97302708 G A KANSL3 Silent p.R55R 0.41 TCGA-A7-A56D-01 2 97833325 97833325 C T ANKRD36 Nonsense_Mutation p.R515* 0.14 TCGA-A7-A56D-01 2 98177150 98177150 C G ANKRD36B RNA 0.19 TCGA-A7-A56D-01 3 111432870 111432870 G A PLCXD2 Missense_Mutation p.R254Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-A7-A56D-01 3 126261309 126261309 C T CHST13 Missense_Mutation p.A305V 0.17 deleterious(0.03) benign(0.207) TCGA-A7-A56D-01 3 129147325 129147325 C T EFCAB12 Missense_Mutation p.D3N 0.07 tolerated(0.32) possibly_damaging(0.479) TCGA-A7-A56D-01 3 142539868 142539868 G A PCOLCE2 Silent p.I323I 0.13 TCGA-A7-A56D-01 3 151155623 151155623 T C IGSF10 Silent p.T2242T 0.21 TCGA-A7-A56D-01 3 152883333 152883333 G A RAP2B 3'UTR 0.14 TCGA-A7-A56D-01 3 183960312 183960312 T C ALG3 Missense_Mutation p.K436R 0.06 tolerated(0.12) benign(0.105) TCGA-A7-A56D-01 3 194409110 194409110 G A FAM43A 3'UTR 0.24 TCGA-A7-A56D-01 3 195506018 195506018 G C MUC4 Missense_Mutation p.L4145V 0.09 unknown(0) TCGA-A7-A56D-01 3 197239047 197239047 C T BDH1 Missense_Mutation p.E251K 0.07 deleterious(0.03) possibly_damaging(0.493) TCGA-A7-A56D-01 3 25639209 25639209 A T RARB 3'UTR 0.54 TCGA-A7-A56D-01 3 50098618 50098618 G C RBM6 Missense_Mutation p.D773H 0.10 tolerated(0.13) possibly_damaging(0.472) TCGA-A7-A56D-01 3 88101406 88101406 T A CGGBP1 3'UTR 0.16 TCGA-A7-A56D-01 3 97541104 97541104 C A CRYBG3 Missense_Mutation p.F18L 0.39 TCGA-A7-A56D-01 4 119554701 119554701 C T RP11-384K6.6 RNA 0.15 TCGA-A7-A56D-01 4 178911714 178911714 C G LINC01098 3'UTR 0.25 TCGA-A7-A56D-01 4 48343849 48343849 G A SLAIN2 Silent p.L31L 0.26 TCGA-A7-A56D-01 4 69056887 69056887 C A TMPRSS11BNL 3'UTR 0.32 TCGA-A7-A56D-01 4 95198218 95198218 C T SMARCAD1 Silent p.L664L 0.07 TCGA-A7-A56D-01 5 127644944 127644944 C T FBN2 Missense_Mutation p.G1783E 0.34 deleterious(0.04) benign(0.405) TCGA-A7-A56D-01 5 127644963 127644963 C T FBN2 Missense_Mutation p.E1777K 0.36 deleterious(0.02) probably_damaging(0.925) TCGA-A7-A56D-01 5 127645021 127645021 C T FBN2 Silent p.V1757V 0.30 TCGA-A7-A56D-01 5 127645092 127645092 C G FBN2 Splice_Site p.X1734_splice 0.41 TCGA-A7-A56D-01 5 140038686 140038686 C G IK Missense_Mutation p.D371E 0.30 tolerated(0.38) benign(0) TCGA-A7-A56D-01 5 140553097 140553097 C T PCDHB7 Silent p.L227L 0.11 TCGA-A7-A56D-01 5 140960344 140960344 G A DIAPH1 Missense_Mutation p.S264F 0.32 unknown(0) TCGA-A7-A56D-01 5 149294525 149294525 C G PDE6A Missense_Mutation p.E327Q 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-A7-A56D-01 5 150310560 150310560 C T ZNF300P1 RNA 0.14 TCGA-A7-A56D-01 5 150310899 150310899 C A ZNF300P1 RNA 0.12 TCGA-A7-A56D-01 5 150311382 150311382 C T ZNF300P1 RNA 0.12 TCGA-A7-A56D-01 5 161576307 161576307 G C GABRG2 Missense_Mutation p.K412N 0.05 tolerated(0.18) possibly_damaging(0.759) TCGA-A7-A56D-01 5 175799539 175799539 G T ARL10 3'UTR 0.17 TCGA-A7-A56D-01 5 5464182 5464182 C T KIAA0947 Missense_Mutation p.H1579Y 0.19 tolerated(0.12) possibly_damaging(0.505) TCGA-A7-A56D-01 5 60060094 60060094 G A ELOVL7 Silent p.I153I 0.24 TCGA-A7-A56D-01 5 60241212 60241212 G C NDUFAF2 Intron 0.10 TCGA-A7-A56D-01 5 61875872 61875872 C T LRRC70 Missense_Mutation p.L203F 0.15 deleterious(0) probably_damaging(0.969) TCGA-A7-A56D-01 5 67589149 67589151 ATT - PIK3R1 In_Frame_Del p.L380del 0.53 TCGA-A7-A56D-01 5 70927969 70927969 G A MCCC2 Missense_Mutation p.E254K 0.07 tolerated_low_confidence(0.29) benign(0.297) TCGA-A7-A56D-01 5 79615950 79615950 C A SPZ1 5'UTR 0.23 TCGA-A7-A56D-01 5 80548572 80548572 G A CKMT2 Missense_Mutation p.A71T 0.43 tolerated(0.17) benign(0.015) TCGA-A7-A56D-01 6 105239459 105239459 G A HACE1 Nonsense_Mutation p.R332* 0.25 TCGA-A7-A56D-01 6 119611907 119611907 C T MAN1A1 Missense_Mutation p.E280K 0.30 deleterious(0) probably_damaging(1) TCGA-A7-A56D-01 6 129722406 129722406 T C LAMA2 Missense_Mutation p.I1828T 0.18 tolerated(1) benign(0.001) TCGA-A7-A56D-01 6 147062317 147062317 C G ADGB Missense_Mutation p.I1029M 0.10 tolerated(0.17) benign(0.104) TCGA-A7-A56D-01 6 149731576 149731576 T A TAB2 3'UTR 0.29 TCGA-A7-A56D-01 6 158932637 158932637 G C TULP4 3'UTR 0.18 TCGA-A7-A56D-01 6 17834206 17834206 C T KIF13A Missense_Mutation p.E418K 0.12 deleterious(0) probably_damaging(0.995) TCGA-A7-A56D-01 6 30003664 30003664 G C ZNRD1-AS1 Intron 0.33 TCGA-A7-A56D-01 6 43541244 43541244 C G XPO5 Missense_Mutation p.G67A 0.16 deleterious(0) probably_damaging(0.999) TCGA-A7-A56D-01 6 75969199 75969199 T G TMEM30A Missense_Mutation p.L183F 0.23 tolerated(0.75) possibly_damaging(0.734) TCGA-A7-A56D-01 7 100416233 100416233 C T EPHB4 Missense_Mutation p.R444Q 0.13 tolerated(0.41) benign(0.084) TCGA-A7-A56D-01 7 108204868 108204868 G C THAP5 Missense_Mutation p.Q319E 0.20 tolerated(0.13) probably_damaging(0.97) TCGA-A7-A56D-01 7 142605662 142605662 G C TRPV5 3'UTR 0.29 TCGA-A7-A56D-01 7 1580760 1580760 C T MAFK 3'UTR 0.18 TCGA-A7-A56D-01 7 24905791 24905791 C T OSBPL3 Silent p.Q149Q 0.14 TCGA-A7-A56D-01 7 2854558 2854558 G A GNA12 Intron 0.08 TCGA-A7-A56D-01 7 37780043 37780043 G A GPR141 Silent p.V16V 0.25 TCGA-A7-A56D-01 7 37780196 37780196 G A GPR141 Silent p.L67L 0.21 TCGA-A7-A56D-01 7 37780202 37780202 G A GPR141 Silent p.V69V 0.22 TCGA-A7-A56D-01 7 37780232 37780232 G C GPR141 Missense_Mutation p.K79N 0.19 tolerated(0.43) benign(0.001) TCGA-A7-A56D-01 7 37780359 37780359 G T GPR141 Missense_Mutation p.D122Y 0.20 deleterious(0) probably_damaging(0.973) TCGA-A7-A56D-01 7 37780730 37780730 G C GPR141 Missense_Mutation p.R245S 0.22 deleterious(0) probably_damaging(0.997) TCGA-A7-A56D-01 7 37780877 37780877 G C GPR141 Missense_Mutation p.K294N 0.15 tolerated_low_confidence(0.3) benign(0.063) TCGA-A7-A56D-01 7 39747602 39747602 G A RALA 3'UTR 0.31 TCGA-A7-A56D-01 7 43916211 43916211 C G URGCP 3'UTR 0.29 TCGA-A7-A56D-01 7 43916314 43916314 G C URGCP Missense_Mutation p.N916K 0.21 tolerated(0.4) benign(0.397) TCGA-A7-A56D-01 7 43916437 43916437 G C URGCP Missense_Mutation p.I875M 0.25 tolerated(0.16) possibly_damaging(0.554) TCGA-A7-A56D-01 7 43916484 43916484 G A URGCP Missense_Mutation p.R860W 0.25 deleterious(0) probably_damaging(0.96) TCGA-A7-A56D-01 7 43917613 43917613 G C URGCP Missense_Mutation p.I483M 0.11 deleterious(0.01) possibly_damaging(0.812) TCGA-A7-A56D-01 7 43917817 43917817 G T URGCP Silent p.V415V 0.13 TCGA-A7-A56D-01 7 43917897 43917897 G T URGCP Missense_Mutation p.P389T 0.13 tolerated(0.14) probably_damaging(0.999) TCGA-A7-A56D-01 7 43917967 43917967 G A URGCP Silent p.I365I 0.16 TCGA-A7-A56D-01 7 43918063 43918063 G C URGCP Silent p.A333A 0.12 TCGA-A7-A56D-01 7 43918380 43918380 G A URGCP Silent p.L228L 0.17 TCGA-A7-A56D-01 7 43918403 43918403 G T URGCP Nonsense_Mutation p.S220* 0.18 TCGA-A7-A56D-01 7 43918481 43918481 G C URGCP Nonsense_Mutation p.S194* 0.18 TCGA-A7-A56D-01 7 43918553 43918553 G T URGCP Missense_Mutation p.S170Y 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-A7-A56D-01 7 44323769 44323769 C T CAMK2B Missense_Mutation p.A41T 0.04 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-A7-A56D-01 7 48319379 48319379 C G ABCA13 Nonsense_Mutation p.S2863* 0.28 TCGA-A7-A56D-01 7 5271584 5271584 C A WIPI2 3'UTR 0.11 TCGA-A7-A56D-01 7 73255528 73255528 C T WBSCR27 Missense_Mutation p.D42N 0.27 deleterious(0) possibly_damaging(0.842) TCGA-A7-A56D-01 7 73588725 73588725 C T EIF4H Silent p.F4F 0.20 TCGA-A7-A56D-01 7 97833267 97833267 G C LMTK2 Missense_Mutation p.E1418Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-A7-A56D-01 8 109455893 109455893 G T EMC2 Silent p.A2A 0.15 TCGA-A7-A56D-01 8 145623698 145623698 C G CPSF1 Missense_Mutation p.E630Q 0.13 tolerated(0.49) benign(0.06) TCGA-A7-A56D-01 9 103092280 103092281 - A TEX10 Frame_Shift_Ins p.N475Kfs*2 0.26 TCGA-A7-A56D-01 9 104238070 104238070 G T TMEM246 3'UTR 0.43 TCGA-A7-A56D-01 9 125681850 125681850 C T ZBTB26 Missense_Mutation p.A122T 0.06 deleterious(0) possibly_damaging(0.764) TCGA-A7-A56D-01 9 130223502 130223502 G A LRSAM1 Silent p.G124G 0.22 TCGA-A7-A56D-01 9 131036126 131036126 C G GOLGA2 Intron 0.15 TCGA-A7-A56D-01 9 132597536 132597536 C G C9orf78 5'UTR 0.19 TCGA-A7-A56D-01 9 19379494 19379494 T C RPS6 Silent p.E43E 0.22 TCGA-A7-A56D-01 9 45727956 45727956 G C FAM27A Missense_Mutation p.R54T 0.17 deleterious_low_confidence(0.05) possibly_damaging(0.773) TCGA-A7-A56D-01 9 77257427 77257427 G A RORB Silent p.Q111Q 0.10 TCGA-A7-A56D-01 9 90387899 90387899 G A CTSL3P RNA 0.35 TCGA-A7-A56D-01 X 144905077 144905077 G C SLITRK2 Missense_Mutation p.K378N 0.08 deleterious(0) possibly_damaging(0.883) TCGA-A7-A56D-01 X 151869614 151869614 G C MAGEA6 Missense_Mutation p.E102Q 0.12 deleterious(0.05) probably_damaging(0.928) TCGA-A7-A56D-01 X 154299780 154299780 G A BRCC3 5'UTR 0.19 TCGA-A7-A56D-01 X 18338466 18338466 T A SCML2 Missense_Mutation p.T158S 0.05 tolerated(0.75) benign(0.001) TCGA-A7-A56D-01 X 23801333 23801333 C T SAT1 5'UTR 0.54 TCGA-A7-A56D-01 X 2933208 2933208 C T ARSH Silent p.L180L 0.15 TCGA-A7-A56D-01 X 3242930 3242930 C A MXRA5 Nonsense_Mutation p.E266* 0.16 TCGA-A7-A56D-01 X 46952339 46952339 C T RGN Missense_Mutation p.A298V 0.28 tolerated(0.11) benign(0.001) TCGA-A7-A56D-01 X 48688396 48688396 G A ERAS 3'UTR 0.15 TCGA-A7-A56D-01 X 53225218 53225218 G A KDM5C Silent p.A1000A 0.32 TCGA-A7-A56D-01 X 70390825 70390825 C T NLGN3 3'Flank 0.22 TCGA-A7-A56D-01 X 92928470 92928470 C T NAP1L3 5'UTR 0.10 TCGA-A7-A5ZV-01 10 104184498 104184498 C A CUEDC2 Silent p.L42L 0.64 TCGA-A7-A5ZV-01 10 104860650 104860650 G C NT5C2 Intron 0.67 TCGA-A7-A5ZV-01 10 25888838 25888838 G C GPR158 3'UTR 0.39 TCGA-A7-A5ZV-01 10 27529275 27529275 T A ACBD5 Nonsense_Mutation p.K52* 0.13 TCGA-A7-A5ZV-01 10 27529276 27529276 C T ACBD5 Silent p.V51V 0.14 TCGA-A7-A5ZV-01 10 32983901 32983901 T C C10ORF68 Silent p.P120P 0.38 TCGA-A7-A5ZV-01 10 61550011 61550011 A G CCDC6 3'UTR 0.20 TCGA-A7-A5ZV-01 10 82191797 82191797 C G FAM213A Missense_Mutation p.S211C 0.41 deleterious(0.01) possibly_damaging(0.687) TCGA-A7-A5ZV-01 10 90537925 90537925 G C LIPN Missense_Mutation p.D375H 0.40 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 11 104769142 104769142 G C CASP12 5'UTR 0.53 TCGA-A7-A5ZV-01 11 1262924 1262924 G T MUC5B Missense_Mutation p.G1605V 0.36 unknown(0) TCGA-A7-A5ZV-01 11 17332417 17332417 T G NUCB2 Missense_Mutation p.F177V 0.44 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 11 18309142 18309142 T C HPS5 Missense_Mutation p.H886R 0.53 tolerated(0.09) benign(0.062) TCGA-A7-A5ZV-01 11 18763852 18763852 C T PTPN5 Missense_Mutation p.D228N 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-A7-A5ZV-01 11 209307 209307 G T RIC8A Nonsense_Mutation p.E41* 0.37 TCGA-A7-A5ZV-01 11 209710 209710 G T RIC8A Nonsense_Mutation p.E146* 0.45 TCGA-A7-A5ZV-01 11 210570 210570 G C RIC8A Splice_Site p.X243_splice 0.37 TCGA-A7-A5ZV-01 11 32439157 32439157 A T WT1 Missense_Mutation p.W306R 0.50 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-A7-A5ZV-01 11 34470811 34470811 C G CAT Missense_Mutation p.R47G 0.22 deleterious(0.02) possibly_damaging(0.828) TCGA-A7-A5ZV-01 11 56114431 56114431 C A OR8K1 Missense_Mutation p.A306D 0.36 deleterious_low_confidence(0) possibly_damaging(0.666) TCGA-A7-A5ZV-01 11 57147150 57147150 G A PRG3 Silent p.V64V 0.29 TCGA-A7-A5ZV-01 11 6007653 6007653 C T OR52L1 Missense_Mutation p.G170R 0.84 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 11 65404520 65404520 C T PCNXL3 3'UTR 0.24 TCGA-A7-A5ZV-01 11 73669432 73669432 C G DNAJB13 Missense_Mutation p.Q47E 0.12 tolerated(1) benign(0.02) TCGA-A7-A5ZV-01 11 76507905 76507905 C G TSKU 3'UTR 0.12 TCGA-A7-A5ZV-01 11 94602426 94602447 CCTCAGCACTGTCCTCCATAGC - AMOTL1 Frame_Shift_Del p.S852Pfs*41 0.56 TCGA-A7-A5ZV-01 12 112466919 112466919 C G NAA25 3'UTR 0.50 TCGA-A7-A5ZV-01 12 12482992 12482992 T G MANSC1 Missense_Mutation p.Y422S 0.12 deleterious(0) probably_damaging(0.997) TCGA-A7-A5ZV-01 12 130882590 130882591 AA - RIMBP2 3'UTR 0.32 TCGA-A7-A5ZV-01 12 131623712 131623712 G A GPR133 Splice_Site p.X844_splice 0.31 TCGA-A7-A5ZV-01 12 14927767 14927767 G A H2AFJ Silent p.T121T 0.23 TCGA-A7-A5ZV-01 12 1702198 1702198 G C FBXL14 Missense_Mutation p.D345E 0.25 deleterious(0) probably_damaging(0.999) TCGA-A7-A5ZV-01 12 21654806 21654806 C T GOLT1B 5'UTR 0.34 TCGA-A7-A5ZV-01 12 26592110 26592110 T A ITPR2 Missense_Mutation p.Q2198L 0.61 tolerated(0.44) benign(0.007) TCGA-A7-A5ZV-01 12 26834906 26834906 G C ITPR2 Missense_Mutation p.S437C 0.16 deleterious(0.02) possibly_damaging(0.76) TCGA-A7-A5ZV-01 12 26834918 26834918 G C ITPR2 Missense_Mutation p.S433C 0.15 tolerated(0.07) benign(0.013) TCGA-A7-A5ZV-01 12 28605484 28605484 A G CCDC91 Missense_Mutation p.H333R 0.48 tolerated(0.18) probably_damaging(0.999) TCGA-A7-A5ZV-01 12 32977060 32977060 C G PKP2 Silent p.A575A 0.27 TCGA-A7-A5ZV-01 12 352957 352957 G A SLC6A13 Silent p.L75L 0.33 TCGA-A7-A5ZV-01 12 43837662 43837662 G A ADAMTS20 Missense_Mutation p.P741L 0.43 deleterious(0) probably_damaging(0.996) TCGA-A7-A5ZV-01 12 5155645 5155645 T G KCNA5 3'UTR 0.23 TCGA-A7-A5ZV-01 12 57424899 57424899 C - MYO1A Frame_Shift_Del p.T804Hfs*38 0.27 TCGA-A7-A5ZV-01 12 69107580 69107580 A C NUP107 Missense_Mutation p.T321P 0.41 deleterious(0.01) probably_damaging(0.984) TCGA-A7-A5ZV-01 12 9006836 9006836 T C A2ML1 Silent p.V901V 0.20 TCGA-A7-A5ZV-01 12 91449978 91449978 A G KERA Silent p.Y27Y 0.52 TCGA-A7-A5ZV-01 13 25802545 25802545 G T MTMR6 3'UTR 0.38 TCGA-A7-A5ZV-01 13 36744912 36744912 G A SOHLH2 Missense_Mutation p.S415F 0.38 deleterious(0) possibly_damaging(0.729) TCGA-A7-A5ZV-01 13 70281842 70281842 C G KLHL1 Missense_Mutation p.R701T 0.79 tolerated(0.07) benign(0.145) TCGA-A7-A5ZV-01 13 76381850 76381850 T A LMO7 Silent p.V244V 0.50 TCGA-A7-A5ZV-01 13 79175956 79175956 G A POU4F1 Missense_Mutation p.T285M 0.35 deleterious(0) unknown(0) TCGA-A7-A5ZV-01 14 101429453 101429453 G T SNORD114-7 RNA 0.23 TCGA-A7-A5ZV-01 14 22309671 22309671 G A TRAV12-1 Missense_Mutation p.V18I 0.12 deleterious(0.03) unknown(0) TCGA-A7-A5ZV-01 15 51756941 51756941 A T DMXL2 Missense_Mutation p.L2580H 0.58 tolerated(0.11) possibly_damaging(0.823) TCGA-A7-A5ZV-01 15 64415706 64415706 T C SNX1 Silent p.D157D 0.43 TCGA-A7-A5ZV-01 15 64495365 64495365 G A CSNK1G1 Silent p.H341H 0.36 TCGA-A7-A5ZV-01 15 68118381 68118390 TCAAACCCAA - SKOR1 Frame_Shift_Del p.L258Pfs*79 0.34 TCGA-A7-A5ZV-01 15 69018290 69018290 C T CORO2B Missense_Mutation p.R474C 0.47 deleterious(0) possibly_damaging(0.762) TCGA-A7-A5ZV-01 15 74363216 74363216 G A GOLGA6A 3'UTR 0.10 TCGA-A7-A5ZV-01 15 86810230 86810230 A G AGBL1 Silent p.Q541Q 0.37 TCGA-A7-A5ZV-01 15 99740201 99740201 C T TTC23 Missense_Mutation p.V228I 0.68 tolerated(0.51) benign(0.026) TCGA-A7-A5ZV-01 16 28913614 28913614 C T ATP2A1 Missense_Mutation p.P811S 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-A7-A5ZV-01 16 30904206 30904206 C T BCL7C Missense_Mutation p.A79T 0.43 tolerated(0.63) benign(0.002) TCGA-A7-A5ZV-01 16 50341022 50341022 T G ADCY7 Missense_Mutation p.V605G 0.26 tolerated(0.09) benign(0.002) TCGA-A7-A5ZV-01 16 57068128 57068128 C T NLRC5 Silent p.A864A 0.34 TCGA-A7-A5ZV-01 16 67840448 67840448 G T RANBP10 5'UTR 0.35 TCGA-A7-A5ZV-01 16 68011248 68011248 C T DPEP3 Missense_Mutation p.G340S 0.18 deleterious(0.01) possibly_damaging(0.63) TCGA-A7-A5ZV-01 16 70595556 70595566 ATGGTTGAGCT - SF3B3 Frame_Shift_Del p.W720Ffs*70 0.24 TCGA-A7-A5ZV-01 16 71318220 71318220 G C CMTR2 Missense_Mutation p.S535C 0.25 tolerated(0.12) benign(0.417) TCGA-A7-A5ZV-01 16 71482925 71482925 G C ZNF23 Missense_Mutation p.P335A 0.24 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 16 73127405 73127405 T C HCCAT5 RNA 0.23 TCGA-A7-A5ZV-01 16 75564472 75564472 A G CHST5 5'UTR 0.21 TCGA-A7-A5ZV-01 16 81939110 81939110 C T PLCG2 Nonsense_Mutation p.Q489* 0.15 TCGA-A7-A5ZV-01 16 85952175 85952175 T C IRF8 Missense_Mutation p.F252L 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-A7-A5ZV-01 16 89816214 89816214 G C FANCA Missense_Mutation p.R1055G 0.29 deleterious(0) benign(0.25) TCGA-A7-A5ZV-01 17 1367713 1367713 C G MYO1C 3'UTR 0.39 TCGA-A7-A5ZV-01 17 18138574 18138574 G A LLGL1 Missense_Mutation p.R411H 0.82 deleterious(0.03) probably_damaging(0.997) TCGA-A7-A5ZV-01 17 26206545 26206545 G C LYRM9 Intron 0.39 TCGA-A7-A5ZV-01 17 26724205 26724205 G C SARM1 3'UTR 0.50 TCGA-A7-A5ZV-01 17 28549027 28549027 G T SLC6A4 5'UTR 0.27 TCGA-A7-A5ZV-01 17 30696729 30696729 C G ZNF207 Missense_Mutation p.P479R 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-A7-A5ZV-01 17 32955729 32955729 G C TMEM132E Splice_Site p.X292_splice 0.38 TCGA-A7-A5ZV-01 17 58603461 58603461 G A APPBP2 5'UTR 0.24 TCGA-A7-A5ZV-01 17 62226173 62226173 T C TEX2 3'UTR 0.41 TCGA-A7-A5ZV-01 17 62530746 62530746 C G CEP95 Nonsense_Mutation p.S654* 0.23 TCGA-A7-A5ZV-01 17 63533717 63533717 G A AXIN2 Silent p.S479S 0.21 TCGA-A7-A5ZV-01 17 64731677 64731677 T A PRKCA Missense_Mutation p.I376N 0.45 deleterious(0) probably_damaging(0.989) TCGA-A7-A5ZV-01 17 73738798 73738798 C T ITGB4 Missense_Mutation p.T973I 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-A7-A5ZV-01 17 7578217 7578218 GT - TP53 Frame_Shift_Del p.T211Ffs*4 0.47 TCGA-A7-A5ZV-01 17 79414170 79414170 C T RP11-1055B8.7 Missense_Mutation p.P1091L 0.15 benign(0.005) TCGA-A7-A5ZV-01 18 21033336 21033336 C G RIOK3 5'UTR 0.20 TCGA-A7-A5ZV-01 18 31323268 31323268 G T ASXL3 Missense_Mutation p.M1152I 0.40 benign(0) TCGA-A7-A5ZV-01 18 7034688 7034688 C A LAMA1 Missense_Mutation p.G614V 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 19 10132500 10132500 C A RDH8 3'UTR 0.62 TCGA-A7-A5ZV-01 19 10230338 10230338 C G EIF3G Missense_Mutation p.G20A 0.27 tolerated(0.11) benign(0.002) TCGA-A7-A5ZV-01 19 17533265 17533265 A G MVB12A Missense_Mutation p.I137M 0.26 deleterious(0.01) benign(0.36) TCGA-A7-A5ZV-01 19 21608659 21608659 T A ZNF493 3'UTR 0.32 TCGA-A7-A5ZV-01 19 22156954 22156954 A G ZNF208 Silent p.F294F 0.30 TCGA-A7-A5ZV-01 19 30500217 30500217 C T URI1 Missense_Mutation p.S331F 0.38 tolerated(0.06) benign(0.062) TCGA-A7-A5ZV-01 19 44515324 44515324 G C ZNF230 Missense_Mutation p.G378A 0.25 tolerated(0.11) benign(0.393) TCGA-A7-A5ZV-01 19 45683173 45683173 T A BLOC1S3 3'UTR 0.42 TCGA-A7-A5ZV-01 19 48714996 48715000 CGAGG - CARD8 Frame_Shift_Del p.L528Vfs*4 0.41 TCGA-A7-A5ZV-01 19 55144502 55144502 C A LILRB1 Missense_Mutation p.P332T 0.41 deleterious(0) probably_damaging(0.946) TCGA-A7-A5ZV-01 19 55250970 55250970 G T KIR2DL3 Missense_Mutation p.G18W 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-A7-A5ZV-01 19 55889519 55889519 G C TMEM190 Missense_Mutation p.G161A 0.57 tolerated_low_confidence(0.78) unknown(0) TCGA-A7-A5ZV-01 19 58868858 58868858 C T ZNF497 Silent p.P48P 0.33 TCGA-A7-A5ZV-01 19 7676785 7676785 C T CAMSAP3 Missense_Mutation p.A496V 0.44 tolerated(0.11) probably_damaging(0.917) TCGA-A7-A5ZV-01 1 104160229 104160229 A C AMY2A Missense_Mutation p.Q56P 0.52 deleterious(0) benign(0.324) TCGA-A7-A5ZV-01 1 11174441 11174441 C G MTOR Missense_Mutation p.D2412H 0.38 deleterious(0) probably_damaging(0.995) TCGA-A7-A5ZV-01 1 146656161 146656161 T C FMO5 3'Flank 0.24 TCGA-A7-A5ZV-01 1 151670142 151670142 T C SNX27 3'UTR 0.89 TCGA-A7-A5ZV-01 1 153317677 153317677 G C PGLYRP4 Silent p.V107V 0.18 TCGA-A7-A5ZV-01 1 153746134 153746134 C G INTS3 3'UTR 0.10 TCGA-A7-A5ZV-01 1 154909139 154909139 G C PMVK Missense_Mutation p.P8R 0.07 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 1 156046901 156046901 C T MEX3A Missense_Mutation p.G343S 0.26 tolerated(0.05) probably_damaging(0.987) TCGA-A7-A5ZV-01 1 158449667 158449667 C T OR10R2 5'Flank 0.20 TCGA-A7-A5ZV-01 1 175958531 175958531 G T RFWD2 Missense_Mutation p.A605E 0.28 deleterious(0) possibly_damaging(0.893) TCGA-A7-A5ZV-01 1 180144454 180144454 A T QSOX1 Splice_Site p.X123_splice 0.32 TCGA-A7-A5ZV-01 1 182567860 182567860 T A RGS16 3'UTR 0.24 TCGA-A7-A5ZV-01 1 183534865 183534865 G T NCF2 Missense_Mutation p.A325D 0.17 deleterious(0.01) possibly_damaging(0.675) TCGA-A7-A5ZV-01 1 186114962 186114962 C T HMCN1 Missense_Mutation p.R4839W 0.32 probably_damaging(0.995) TCGA-A7-A5ZV-01 1 186648330 186648330 T G PTGS2 Missense_Mutation p.E58A 0.10 deleterious(0.05) benign(0.214) TCGA-A7-A5ZV-01 1 197390621 197390621 C A CRB1 Missense_Mutation p.L555I 0.24 tolerated(0.1) benign(0.122) TCGA-A7-A5ZV-01 1 206762065 206762065 C G RASSF5 3'Flank 0.25 TCGA-A7-A5ZV-01 1 215793688 215793688 T C KCTD3 Silent p.L726L 0.27 TCGA-A7-A5ZV-01 1 225341452 225341452 G C DNAH14 Missense_Mutation p.D813H 0.31 deleterious(0) probably_damaging(0.957) TCGA-A7-A5ZV-01 1 234744216 234744216 T C IRF2BP2 Missense_Mutation p.N342S 0.29 tolerated(0.98) benign(0.292) TCGA-A7-A5ZV-01 1 33116821 33116821 G A RBBP4 5'UTR 0.88 TCGA-A7-A5ZV-01 1 35334365 35334365 C G DLGAP3 Missense_Mutation p.E776Q 0.09 tolerated(0.09) possibly_damaging(0.5) TCGA-A7-A5ZV-01 1 3677858 3677858 C T CCDC27 Missense_Mutation p.S242F 0.39 deleterious(0) probably_damaging(0.919) TCGA-A7-A5ZV-01 1 38447466 38447466 T G SF3A3 Silent p.T162T 0.56 TCGA-A7-A5ZV-01 1 41979410 41979410 C T HIVEP3 Missense_Mutation p.D1828N 0.17 possibly_damaging(0.526) TCGA-A7-A5ZV-01 1 45253311 45253311 G A BEST4 Missense_Mutation p.R23C 0.14 tolerated(0.19) benign(0.411) TCGA-A7-A5ZV-01 1 47142175 47142175 A T EFCAB14 3'UTR 0.28 TCGA-A7-A5ZV-01 1 53712193 53712193 A G LRP8 3'UTR 0.21 TCGA-A7-A5ZV-01 1 60521024 60521024 G T C1orf87 Missense_Mutation p.T65N 0.15 tolerated(0.4) benign(0.003) TCGA-A7-A5ZV-01 1 66085646 66085646 C G LEPR Missense_Mutation p.L811V 0.08 deleterious(0.03) probably_damaging(0.947) TCGA-A7-A5ZV-01 1 75627124 75627124 G A LHX8 3'UTR 0.40 TCGA-A7-A5ZV-01 1 809581 809581 A G FAM41C 5'Flank 0.36 TCGA-A7-A5ZV-01 1 94884011 94884011 C T ABCD3 5'UTR 0.17 TCGA-A7-A5ZV-01 20 24954350 24954350 C T APMAP Missense_Mutation p.D118N 0.56 deleterious(0) possibly_damaging(0.881) TCGA-A7-A5ZV-01 20 2517931 2517931 A C TMC2 Missense_Mutation p.K17N 0.65 tolerated_low_confidence(0.08) benign(0) TCGA-A7-A5ZV-01 20 30816094 30816094 G C POFUT1 Missense_Mutation p.A191P 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-A7-A5ZV-01 20 54823894 54823894 A G MC3R 5'UTR 0.41 TCGA-A7-A5ZV-01 21 31812765 31812765 C T KRTAP15-1 Silent p.T40T 0.30 TCGA-A7-A5ZV-01 21 38639750 38639750 C T DSCR3 5'UTR 0.24 TCGA-A7-A5ZV-01 22 25289403 25289403 C T SGSM1 Silent p.D647D 0.40 TCGA-A7-A5ZV-01 22 31600503 31600503 C G RNF185 Missense_Mutation p.D170E 0.37 tolerated(1) benign(0.002) TCGA-A7-A5ZV-01 22 41318426 41318426 A G XPNPEP3 Missense_Mutation p.E382G 0.29 deleterious(0.01) benign(0.063) TCGA-A7-A5ZV-01 22 42393334 42393334 G C SEPT3 3'UTR 0.43 TCGA-A7-A5ZV-01 2 10743249 10743249 C A NOL10 Silent p.R396R 0.50 TCGA-A7-A5ZV-01 2 10743250 10743250 C A NOL10 Missense_Mutation p.R396L 0.50 deleterious(0) probably_damaging(0.995) TCGA-A7-A5ZV-01 2 141660640 141660640 G A LRP1B Silent p.L1205L 0.30 TCGA-A7-A5ZV-01 2 176959621 176959621 C G HOXD13 3'UTR 0.53 TCGA-A7-A5ZV-01 2 182323032 182323032 C A ITGA4 Missense_Mutation p.Q103K 0.45 tolerated(0.1) benign(0.184) TCGA-A7-A5ZV-01 2 210690764 210690764 T C UNC80 Missense_Mutation p.V822A 0.30 benign(0.028) TCGA-A7-A5ZV-01 2 220379706 220379706 G T ASIC4 Missense_Mutation p.G214V 0.45 tolerated(0.11) benign(0.055) TCGA-A7-A5ZV-01 2 223065031 223065031 T G PAX3 3'UTR 0.15 TCGA-A7-A5ZV-01 2 68872962 68872962 C A PROKR1 Silent p.T3T 0.58 TCGA-A7-A5ZV-01 2 73490823 73490823 C T FBXO41 Silent p.L686L 0.31 TCGA-A7-A5ZV-01 2 73679158 73679158 G C ALMS1 Missense_Mutation p.G1834A 0.34 benign(0.249) TCGA-A7-A5ZV-01 2 74745704 74745704 A C DQX1 Missense_Mutation p.F675V 0.18 deleterious(0) possibly_damaging(0.787) TCGA-A7-A5ZV-01 2 89110909 89110909 A C MIR4436A 5'Flank 0.19 TCGA-A7-A5ZV-01 2 90078037 90078037 C G IGKV3D-20 Missense_Mutation p.T25R 0.24 deleterious(0) probably_damaging(0.971) TCGA-A7-A5ZV-01 2 90249196 90249196 T A IGKV1D-43 Missense_Mutation p.I51N 0.18 deleterious(0) benign(0.414) TCGA-A7-A5ZV-01 3 101476918 101476918 A G CEP97 Missense_Mutation p.I490V 0.22 tolerated(0.43) benign(0.001) TCGA-A7-A5ZV-01 3 120977986 120977986 T C STXBP5L Silent p.T643T 0.18 TCGA-A7-A5ZV-01 3 129695551 129695551 T C TRH Missense_Mutation p.I74T 0.26 tolerated(0.63) benign(0.007) TCGA-A7-A5ZV-01 3 130851600 130851600 A C NEK11 Missense_Mutation p.H156P 0.15 deleterious(0) probably_damaging(0.999) TCGA-A7-A5ZV-01 3 1414639 1414639 G T CNTN6 Missense_Mutation p.G596C 0.56 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 3 151164718 151164718 G A IGSF10 Silent p.G1017G 0.52 TCGA-A7-A5ZV-01 3 164905374 164905374 C T SLITRK3 3'UTR 0.35 TCGA-A7-A5ZV-01 3 185361830 185361830 G A IGF2BP2 3'UTR 0.16 TCGA-A7-A5ZV-01 3 197574884 197574885 TT - LRCH3 Frame_Shift_Del p.F508Cfs*22 0.34 TCGA-A7-A5ZV-01 3 197640684 197640684 G C IQCG Intron 0.24 TCGA-A7-A5ZV-01 3 32209039 32209039 C T GPD1L 3'UTR 0.38 TCGA-A7-A5ZV-01 3 35731625 35731625 G T ARPP21 Missense_Mutation p.D180Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-A7-A5ZV-01 3 37388771 37388771 T G GOLGA4 Missense_Mutation p.M2202R 0.49 probably_damaging(0.945) TCGA-A7-A5ZV-01 3 53381533 53381533 C G DCP1A Silent p.L4L 0.50 TCGA-A7-A5ZV-01 3 57136608 57136608 G T IL17RD Missense_Mutation p.P293Q 0.43 deleterious(0.03) benign(0.063) TCGA-A7-A5ZV-01 3 97983248 97983248 A T OR5H6 Missense_Mutation p.K40N 0.31 deleterious(0.02) benign(0.077) TCGA-A7-A5ZV-01 4 122103898 122103898 G C TNIP3 Missense_Mutation p.A48G 0.31 tolerated(0.21) benign(0.255) TCGA-A7-A5ZV-01 4 129043104 129043104 A T LARP1B Missense_Mutation p.T429S 0.31 tolerated(0.22) benign(0.38) TCGA-A7-A5ZV-01 4 1805440 1805440 G A FGFR3 Intron 0.58 TCGA-A7-A5ZV-01 4 70620956 70620956 A G SULT1B1 5'UTR 0.33 TCGA-A7-A5ZV-01 5 137518631 137518631 G C KIF20A Missense_Mutation p.A262P 0.42 deleterious(0.03) probably_damaging(0.968) TCGA-A7-A5ZV-01 5 140475557 140475557 T C PCDHB2 Silent p.L395L 0.35 TCGA-A7-A5ZV-01 5 140806491 140806491 G C PCDHGB6 Intron 0.33 TCGA-A7-A5ZV-01 5 145859620 145859620 A C TCERG1 Missense_Mutation p.I617L 0.47 tolerated(0.34) unknown(0) TCGA-A7-A5ZV-01 5 153190763 153190763 C A GRIA1 Missense_Mutation p.P910H 0.56 deleterious_low_confidence(0.03) benign(0.396) TCGA-A7-A5ZV-01 5 162909722 162909722 A T HMMR Missense_Mutation p.K487M 0.59 tolerated(0.13) benign(0.019) TCGA-A7-A5ZV-01 5 1878506 1878506 G A IRX4 Silent p.A379A 0.32 TCGA-A7-A5ZV-01 5 26906194 26906194 T C CDH9 Missense_Mutation p.R229G 0.18 deleterious(0) benign(0.057) TCGA-A7-A5ZV-01 5 36996575 36996575 G T NIPBL Intron 0.20 TCGA-A7-A5ZV-01 5 40843354 40843354 T C CARD6 Silent p.P128P 0.27 TCGA-A7-A5ZV-01 5 41158826 41158826 C A C6 Missense_Mutation p.A640S 0.49 tolerated(0.63) benign(0.002) TCGA-A7-A5ZV-01 5 44815128 44815128 C A MRPS30 Missense_Mutation p.Q382K 0.15 tolerated(0.15) benign(0.044) TCGA-A7-A5ZV-01 5 71495434 71495434 C T MAP1B Silent p.L2084L 0.43 TCGA-A7-A5ZV-01 6 108042094 108042094 G T SCML4 Missense_Mutation p.H262Q 0.46 tolerated(0.58) benign(0.003) TCGA-A7-A5ZV-01 6 116875396 116875396 A C FAM26D Missense_Mutation p.N4T 0.44 deleterious(0.01) probably_damaging(0.92) TCGA-A7-A5ZV-01 6 150059887 150059887 G C NUP43 Missense_Mutation p.A177G 0.48 tolerated(0.13) benign(0.109) TCGA-A7-A5ZV-01 6 152423472 152423472 C A ESR1 3'UTR 0.64 TCGA-A7-A5ZV-01 6 152631867 152631867 G T SYNE1 Missense_Mutation p.Q5618K 0.23 benign(0.016) TCGA-A7-A5ZV-01 6 152680558 152680558 C G SYNE1 Missense_Mutation p.L3445F 0.30 probably_damaging(0.988) TCGA-A7-A5ZV-01 6 159049452 159049453 - A TMEM181 Frame_Shift_Ins p.Y512Ifs*54 0.23 TCGA-A7-A5ZV-01 6 162622175 162622175 G C PARK2 Silent p.L174L 0.38 TCGA-A7-A5ZV-01 6 35437091 35437091 G C RPL10A Intron 0.33 TCGA-A7-A5ZV-01 6 38813487 38813487 G A DNAH8 Silent p.S1444S 0.50 TCGA-A7-A5ZV-01 6 4041044 4041044 G A PRPF4B Missense_Mutation p.R484Q 0.63 tolerated(0.23) benign(0.238) TCGA-A7-A5ZV-01 6 42236954 42236954 G T TRERF1 Silent p.S125S 0.11 TCGA-A7-A5ZV-01 6 42893211 42893211 C T PTCRA Missense_Mutation p.P213S 0.58 tolerated_low_confidence(0.09) possibly_damaging(0.658) TCGA-A7-A5ZV-01 6 43269337 43269337 C A SLC22A7 Missense_Mutation p.A323D 0.19 tolerated(0.14) possibly_damaging(0.71) TCGA-A7-A5ZV-01 6 47791825 47791825 G A OPN5 3'UTR 0.21 TCGA-A7-A5ZV-01 6 65596590 65596590 C A EYS Missense_Mutation p.G998C 0.32 deleterious(0) probably_damaging(0.998) TCGA-A7-A5ZV-01 6 70881901 70881901 G A COL19A1 Missense_Mutation p.G872S 0.25 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 6 87969944 87969944 G C ZNF292 Missense_Mutation p.M2199I 0.22 deleterious(0.04) possibly_damaging(0.54) TCGA-A7-A5ZV-01 6 90039466 90039466 C T UBE2J1 Missense_Mutation p.A297T 0.25 deleterious(0) probably_damaging(0.996) TCGA-A7-A5ZV-01 7 100224404 100224404 G C TFR2 Nonsense_Mutation p.Y706* 0.23 TCGA-A7-A5ZV-01 7 100284299 100284299 C A GIGYF1 Missense_Mutation p.G223C 0.23 deleterious(0) unknown(0) TCGA-A7-A5ZV-01 7 102743739 102743739 A T NAPEPLD 3'UTR 0.27 TCGA-A7-A5ZV-01 7 11486928 11486928 G C THSD7A Missense_Mutation p.T910S 0.26 tolerated(0.19) possibly_damaging(0.464) TCGA-A7-A5ZV-01 7 123509113 123509113 C T HYAL4 Silent p.I262I 0.23 TCGA-A7-A5ZV-01 7 12727161 12727161 T G ARL4A 5'UTR 0.25 TCGA-A7-A5ZV-01 7 128488116 128488116 C A FLNC Missense_Mutation p.P1525Q 0.19 deleterious(0) probably_damaging(1) TCGA-A7-A5ZV-01 7 149171723 149171723 C T ZNF746 Missense_Mutation p.V564M 0.28 deleterious(0.04) probably_damaging(0.987) TCGA-A7-A5ZV-01 7 150174567 150174567 G A GIMAP8 Missense_Mutation p.R566Q 0.55 deleterious(0.01) probably_damaging(1) TCGA-A7-A5ZV-01 7 157000483 157000483 G C UBE3C Missense_Mutation p.G555R 0.17 deleterious(0.04) possibly_damaging(0.904) TCGA-A7-A5ZV-01 7 21726786 21726786 C T DNAH11 Silent p.T1904T 0.05 TCGA-A7-A5ZV-01 7 27202442 27202442 A C HOXA9 3'UTR 0.38 TCGA-A7-A5ZV-01 7 48318271 48318271 C A ABCA13 Missense_Mutation p.P2494T 0.17 possibly_damaging(0.642) TCGA-A7-A5ZV-01 7 50135833 50135833 A G C7orf72 Missense_Mutation p.H51R 0.30 tolerated(0.06) probably_damaging(0.991) TCGA-A7-A5ZV-01 7 5336823 5336823 C G SLC29A4 Silent p.V292V 0.27 TCGA-A7-A5ZV-01 7 5568044 5568044 C G ACTB Missense_Mutation p.E224Q 0.35 tolerated_low_confidence(0.06) benign(0.343) TCGA-A7-A5ZV-01 7 71177210 71177210 G A WBSCR17 3'UTR 0.17 TCGA-A7-A5ZV-01 7 77578993 77578993 A C PHTF2 Splice_Site p.X620_splice 0.26 TCGA-A7-A5ZV-01 7 82791775 82791775 A C PCLO Missense_Mutation p.L45W 0.23 unknown(0) TCGA-A7-A5ZV-01 7 8474161 8474161 C G NXPH1 5'UTR 0.07 TCGA-A7-A5ZV-01 7 91844033 91844033 T G KRIT1 Missense_Mutation p.K541T 0.13 tolerated(0.06) benign(0.446) TCGA-A7-A5ZV-01 7 93551371 93551371 T A GNG11 5'UTR 0.17 TCGA-A7-A5ZV-01 7 95223049 95223049 G T PDK4 Missense_Mutation p.F102L 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-A7-A5ZV-01 7 99023239 99023239 C G ATP5J2-PTCD1 Missense_Mutation p.V355L 0.31 deleterious(0.04) possibly_damaging(0.747) TCGA-A7-A5ZV-01 8 100523446 100523446 A C VPS13B Silent p.R1472R 0.15 TCGA-A7-A5ZV-01 8 101642561 101642561 C T SNX31 Silent p.A105A 0.44 TCGA-A7-A5ZV-01 8 125989335 125989335 T C ZNF572 Silent p.P275P 0.12 TCGA-A7-A5ZV-01 8 131862032 131862032 A C ADCY8 Missense_Mutation p.I743S 0.29 deleterious(0) benign(0.011) TCGA-A7-A5ZV-01 8 145738257 145738257 C T RECQL4 Missense_Mutation p.V910I 0.15 deleterious(0.04) possibly_damaging(0.524) TCGA-A7-A5ZV-01 8 42012400 42012400 T C AP3M2 Silent p.F65F 0.14 TCGA-A7-A5ZV-01 8 42025237 42025237 G - AP3M2 Frame_Shift_Del p.T357Pfs*2 0.19 TCGA-A7-A5ZV-01 8 48921029 48921029 A C UBE2V2 Silent p.T5T 0.19 TCGA-A7-A5ZV-01 8 67543036 67543036 C G VCPIP1 3'UTR 0.17 TCGA-A7-A5ZV-01 8 91971167 91971168 AC - C8orf88 3'UTR 0.26 TCGA-A7-A5ZV-01 8 94746523 94746523 C T RBM12B Missense_Mutation p.D706N 0.24 deleterious_low_confidence(0.04) benign(0.017) TCGA-A7-A5ZV-01 8 94746790 94746790 C A RBM12B Nonsense_Mutation p.E617* 0.15 TCGA-A7-A5ZV-01 9 100693415 100693415 G A HEMGN Missense_Mutation p.P88S 0.26 tolerated(0.09) probably_damaging(0.932) TCGA-A7-A5ZV-01 9 125772723 125772723 A G RABGAP1 Missense_Mutation p.T489A 0.28 tolerated(0.79) benign(0.004) TCGA-A7-A5ZV-01 9 131592034 131592034 G C C9orf114 Missense_Mutation p.P9R 0.30 deleterious_low_confidence(0.02) benign(0.001) TCGA-A7-A5ZV-01 9 137330373 137330373 C G RXRA 3'Flank 0.35 TCGA-A7-A5ZV-01 9 140007473 140007473 C T DPP7 Missense_Mutation p.V268M 0.74 tolerated(0.58) benign(0.122) TCGA-A7-A5ZV-01 9 33344082 33344082 C T NFX1 Missense_Mutation p.T747I 0.37 deleterious(0.03) benign(0.273) TCGA-A7-A5ZV-01 9 35806119 35806119 G A NPR2 Missense_Mutation p.R754Q 0.33 tolerated(0.58) benign(0.075) TCGA-A7-A5ZV-01 9 77354692 77354692 G C TRPM6 Missense_Mutation p.R1812G 0.39 tolerated(0.12) benign(0.049) TCGA-A7-A5ZV-01 9 86617537 86617537 G C RMI1 Missense_Mutation p.V546L 0.52 tolerated(0.08) benign(0.001) TCGA-A7-A5ZV-01 9 99581209 99581209 A G ZNF782 Missense_Mutation p.Y366H 0.31 deleterious(0.02) benign(0.156) TCGA-A7-A5ZV-01 X 125686804 125686804 G C DCAF12L1 5'UTR 0.61 TCGA-A7-A5ZV-01 X 134023050 134023050 A T MOSPD1 3'UTR 0.21 TCGA-A7-A5ZV-01 X 134186146 134186146 C T FAM127B 5'UTR 0.29 TCGA-A7-A5ZV-01 X 145078724 145078724 G T MIR892B RNA 0.56 TCGA-A7-A5ZV-01 X 1718374 1718374 C T AKAP17A Intron 0.22 TCGA-A7-A5ZV-01 X 24830922 24830922 C T POLA1 Missense_Mutation p.L1074F 0.34 tolerated(0.12) possibly_damaging(0.691) TCGA-A7-A5ZV-01 X 26212560 26212560 G A MAGEB6 Silent p.A199A 0.07 TCGA-A7-A5ZV-01 X 27839450 27839450 C G MAGEB10 Silent p.L9L 0.43 TCGA-A7-A5ZV-01 X 57623162 57623162 C G ZXDB 3'UTR 0.47 TCGA-A7-A5ZV-01 X 64717089 64717089 A G ZC3H12B Missense_Mutation p.D229G 0.31 deleterious(0) benign(0.201) TCGA-A7-A5ZV-01 X 69639953 69639953 G C KIF4A Missense_Mutation p.K1179N 0.35 tolerated_low_confidence(0.18) benign(0.001) TCGA-A7-A5ZV-01 X 69640153 69640153 G T KIF4A 3'UTR 0.36 TCGA-A7-A5ZV-01 X 7811224 7811224 C T VCX 5'UTR 0.26 TCGA-A7-A5ZV-01 X 78216940 78216940 T C P2RY10 Missense_Mutation p.M308T 0.36 tolerated(1) benign(0.001) TCGA-A7-A5ZV-01 X 82763378 82763378 T A POU3F4 Missense_Mutation p.S16T 0.28 tolerated_low_confidence(0.09) benign(0.119) TCGA-A7-A5ZV-01 X 90691744 90691744 T A PABPC5 3'UTR 0.45 TCGA-A7-A5ZV-01 X 9864049 9864049 G A SHROOM2 Missense_Mutation p.D701N 0.35 deleterious(0.02) probably_damaging(0.972) TCGA-A7-A5ZW-01 11 125659317 125659317 G A PATE3 Missense_Mutation p.R29H 0.22 tolerated(0.31) benign(0.028) TCGA-A7-A5ZW-01 11 13441137 13441137 C T BTBD10 Missense_Mutation p.V152I 0.05 tolerated_low_confidence(0.09) benign(0.017) TCGA-A7-A5ZW-01 11 25104050 25104050 A T LUZP2 3'Flank 0.33 TCGA-A7-A5ZW-01 12 101505430 101505430 C T ANO4 Missense_Mutation p.R763C 0.11 deleterious(0) probably_damaging(1) TCGA-A7-A5ZW-01 12 113534596 113534596 C A DTX1 Nonsense_Mutation p.S572* 0.31 TCGA-A7-A5ZW-01 12 53498996 53498996 C G SOAT2 Missense_Mutation p.L82V 0.25 tolerated(0.51) benign(0.002) TCGA-A7-A5ZW-01 12 58176985 58176985 C T RP11-571M6.15 Missense_Mutation p.H57Y 0.22 tolerated(1) benign(0.007) TCGA-A7-A5ZW-01 13 31338226 31338226 C G ALOX5AP Missense_Mutation p.L157V 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-A7-A5ZW-01 14 105417180 105417180 G C AHNAK2 Silent p.L1536L 0.24 TCGA-A7-A5ZW-01 14 107114033 107114033 T C IGHV3-64 Missense_Mutation p.E21G 0.05 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-A7-A5ZW-01 15 66273187 66273187 G A MEGF11 Missense_Mutation p.R231C 0.21 deleterious(0) probably_damaging(0.932) TCGA-A7-A5ZW-01 15 90274679 90274679 G A WDR93 Missense_Mutation p.E406K 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-A7-A5ZW-01 16 71026081 71026081 G A HYDIN Missense_Mutation p.A1226V 0.08 benign(0.04) TCGA-A7-A5ZW-01 16 89351908 89351908 C T ANKRD11 Missense_Mutation p.E348K 0.26 possibly_damaging(0.899) TCGA-A7-A5ZW-01 17 18327853 18327853 C A AL353997.3 RNA 0.15 TCGA-A7-A5ZW-01 18 5433996 5433996 C T EPB41L3 Missense_Mutation p.E244K 0.28 deleterious(0) possibly_damaging(0.651) TCGA-A7-A5ZW-01 19 49573895 49573895 C T KCNA7 Missense_Mutation p.G266R 0.34 tolerated(0.06) probably_damaging(1) TCGA-A7-A5ZW-01 1 169762443 169762443 C A METTL18 Missense_Mutation p.V132L 0.17 tolerated(0.07) benign(0.152) TCGA-A7-A5ZW-01 1 182836152 182836152 G T DHX9 Missense_Mutation p.D511Y 0.29 deleterious(0) probably_damaging(1) TCGA-A7-A5ZW-01 1 220964935 220964935 C A MARC1 Silent p.L126L 0.11 TCGA-A7-A5ZW-01 1 32790085 32790085 G A HDAC1 Missense_Mutation p.V96I 0.13 tolerated(0.06) benign(0.023) TCGA-A7-A5ZW-01 21 43444465 43444465 C T ZNF295-AS1 RNA 0.29 TCGA-A7-A5ZW-01 22 18371885 18371885 G A MICAL3 Silent p.A602A 0.13 TCGA-A7-A5ZW-01 2 242170255 242170255 G A HDLBP Silent p.D1131D 0.17 TCGA-A7-A5ZW-01 3 160021776 160021776 T C IFT80 Missense_Mutation p.T360A 0.12 tolerated(0.14) benign(0.014) TCGA-A7-A5ZW-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.30 tolerated(0.11) possibly_damaging(0.529) TCGA-A7-A5ZW-01 3 49051896 49051896 T C WDR6 Missense_Mutation p.V946A 0.07 deleterious(0.03) possibly_damaging(0.907) TCGA-A7-A5ZW-01 4 187535469 187535469 G A FAT1 Silent p.D3035D 0.16 TCGA-A7-A5ZW-01 4 55955041 55955042 - G KDR Frame_Shift_Ins p.Q1169Sfs*41 0.10 TCGA-A7-A5ZW-01 5 121786820 121786820 G C SNCAIP Missense_Mutation p.E760Q 0.11 tolerated(0.1) possibly_damaging(0.653) TCGA-A7-A5ZW-01 5 140229433 140229433 C T PCDHA9 Silent p.N451N 0.42 TCGA-A7-A5ZW-01 5 56179458 56179458 T - MAP3K1 Frame_Shift_Del p.Y1258Ifs*11 0.19 TCGA-A7-A5ZW-01 6 26204901 26204901 G C HIST1H4E Missense_Mutation p.G10A 0.07 deleterious_low_confidence(0.04) unknown(0) TCGA-A7-A5ZW-01 6 55378966 55378966 A G HMGCLL1 Missense_Mutation p.V171A 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-A7-A5ZW-01 7 152007146 152007146 G A KMT2C Missense_Mutation p.H252Y 0.26 probably_damaging(0.999) TCGA-A7-A5ZW-01 7 72023848 72023848 T C TYW1B RNA 0.07 TCGA-A7-A5ZW-01 7 91718705 91718705 G C AKAP9 Missense_Mutation p.E3074Q 0.15 benign(0.053) TCGA-A7-A5ZW-01 X 144910187 144910187 A G TMEM257 3'UTR 0.33 TCGA-A7-A5ZX-01 10 84745274 84745274 C T NRG3 Silent p.L668L 0.19 TCGA-A7-A5ZX-01 11 119181178 119181178 T A MCAM Splice_Site p.X598_splice 0.13 TCGA-A7-A5ZX-01 11 124012311 124012311 G A VWA5A Missense_Mutation p.R629Q 0.08 tolerated(0.6) benign(0.001) TCGA-A7-A5ZX-01 11 252640 252640 G A PSMD13 3'UTR 0.12 TCGA-A7-A5ZX-01 11 27016341 27016341 C A FIBIN Missense_Mutation p.Q90K 0.19 deleterious_low_confidence(0.03) probably_damaging(0.969) TCGA-A7-A5ZX-01 11 57584498 57584498 C G CTNND1 3'UTR 0.08 TCGA-A7-A5ZX-01 11 73849826 73849826 C T C2CD3 Silent p.K298K 0.21 TCGA-A7-A5ZX-01 12 115114233 115114236 TCTT - TBX3 Frame_Shift_Del p.E327Dfs*33 0.14 TCGA-A7-A5ZX-01 12 49742941 49742941 C T DNAJC22 Silent p.L96L 0.10 TCGA-A7-A5ZX-01 12 6702280 6702280 G A CHD4 Missense_Mutation p.R877W 0.14 deleterious(0) probably_damaging(0.965) TCGA-A7-A5ZX-01 12 81067076 81067076 A T PTPRQ Missense_Mutation p.Q2240L 0.20 deleterious(0) probably_damaging(0.999) TCGA-A7-A5ZX-01 13 100982917 100982917 G A PCCA Missense_Mutation p.G511D 0.18 deleterious(0) probably_damaging(0.958) TCGA-A7-A5ZX-01 13 86369296 86369296 T A SLITRK6 Missense_Mutation p.I450L 0.20 deleterious(0.02) benign(0.022) TCGA-A7-A5ZX-01 14 19377927 19377927 T C OR11H12 Missense_Mutation p.C112R 0.16 deleterious(0.01) probably_damaging(0.96) TCGA-A7-A5ZX-01 14 70712917 70712917 A G ADAM21P1 RNA 0.12 TCGA-A7-A5ZX-01 15 42058213 42058213 T G MGA Missense_Mutation p.L2645V 0.32 tolerated(0.16) probably_damaging(0.935) TCGA-A7-A5ZX-01 16 68862103 68862103 C - CDH1 Frame_Shift_Del p.L731Ffs*39 0.24 TCGA-A7-A5ZX-01 18 43846375 43846375 C T C18orf25 3'UTR 0.08 TCGA-A7-A5ZX-01 19 15905612 15905612 C A OR10H5 Missense_Mutation p.H252N 0.08 deleterious(0) probably_damaging(0.996) TCGA-A7-A5ZX-01 19 9088641 9088642 GG - MUC16 Frame_Shift_Del p.P1058Hfs*8 0.11 TCGA-A7-A5ZX-01 1 149871946 149871946 G A BOLA1 Missense_Mutation p.A112T 0.11 tolerated(0.45) benign(0.01) TCGA-A7-A5ZX-01 1 201757727 201757727 A G NAV1 Missense_Mutation p.M1043V 0.09 deleterious(0.01) possibly_damaging(0.671) TCGA-A7-A5ZX-01 1 47611572 47611572 C A CYP4A22 Missense_Mutation p.H419Q 0.16 deleterious(0.01) possibly_damaging(0.9) TCGA-A7-A5ZX-01 22 21804917 21804917 G T HIC2 3'UTR 0.17 TCGA-A7-A5ZX-01 22 32587157 32587157 C T RFPL2 Missense_Mutation p.V247M 0.17 tolerated(0.11) possibly_damaging(0.869) TCGA-A7-A5ZX-01 2 109371638 109371638 C G RANBP2 Missense_Mutation p.P797A 0.09 deleterious(0) benign(0.016) TCGA-A7-A5ZX-01 2 17697546 17697546 A G RAD51AP2 Missense_Mutation p.C713R 0.12 tolerated(0.06) probably_damaging(0.98) TCGA-A7-A5ZX-01 2 241078590 241078590 G C OTOS Missense_Mutation p.D89E 0.06 tolerated(0.61) benign(0.01) TCGA-A7-A5ZX-01 2 74685680 74685680 C T WBP1 5'UTR 0.12 TCGA-A7-A5ZX-01 3 136048838 136048838 T G PCCB Silent p.P550P 0.13 TCGA-A7-A5ZX-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.08 deleterious(0.02) probably_damaging(0.965) TCGA-A7-A5ZX-01 3 197670789 197670789 C T IQCG Missense_Mutation p.E48K 0.11 tolerated_low_confidence(0.08) possibly_damaging(0.539) TCGA-A7-A5ZX-01 3 27414607 27414607 A G SLC4A7 3'UTR 0.38 TCGA-A7-A5ZX-01 3 38125681 38125681 C T DLEC1 Silent p.T402T 0.05 TCGA-A7-A5ZX-01 3 47702933 47702933 C T SMARCC1 Missense_Mutation p.R724Q 0.17 tolerated(0.09) benign(0.266) TCGA-A7-A5ZX-01 4 77087420 77087420 C T SCARB2 Missense_Mutation p.V408M 0.14 deleterious(0) probably_damaging(0.995) TCGA-A7-A5ZX-01 5 140581408 140581408 C T PCDHB11 Silent p.T687T 0.08 TCGA-A7-A5ZX-01 6 166952246 166952246 G A RPS6KA2 Silent p.D50D 0.10 TCGA-A7-A5ZX-01 6 65655792 65655792 A G EYS Missense_Mutation p.C759R 0.12 tolerated(0.07) benign(0.001) TCGA-A7-A5ZX-01 7 27224434 27224434 G T HOXA11 Missense_Mutation p.S110R 0.20 tolerated(0.08) benign(0.025) TCGA-A7-A5ZX-01 8 37702522 37702522 C T BRF2 Missense_Mutation p.R249Q 0.15 tolerated(0.14) benign(0.004) TCGA-A7-A5ZX-01 8 41511698 41511698 G A ANK1 3'Flank 0.15 TCGA-A7-A5ZX-01 8 89053874 89053874 C T MMP16 Missense_Mutation p.D547N 0.10 tolerated(0.13) possibly_damaging(0.843) TCGA-A7-A5ZX-01 X 12708332 12708332 C T FRMPD4 Nonsense_Mutation p.Q234* 0.08 TCGA-A7-A5ZX-01 X 32361404 32361404 C G DMD Splice_Site p.X1863_splice 0.26 TCGA-A7-A6VV-01 10 33215038 33215038 C T ITGB1 Splice_Site p.X183_splice 0.15 TCGA-A7-A6VV-01 10 3821342 3821342 A - KLF6 3'UTR 0.09 TCGA-A7-A6VV-01 10 70405962 70405962 G A TET1 Missense_Mutation p.R1159Q 0.67 tolerated(0.15) benign(0.082) TCGA-A7-A6VV-01 10 71103607 71103607 C T HK1 Missense_Mutation p.R34W 0.10 deleterious(0.03) probably_damaging(0.986) TCGA-A7-A6VV-01 11 115046932 115046932 C G CADM1 3'UTR 0.25 TCGA-A7-A6VV-01 12 20890127 20890127 T A SLCO1C1 Missense_Mutation p.M490K 0.17 deleterious(0) benign(0.251) TCGA-A7-A6VV-01 14 77493007 77493007 C G IRF2BPL Missense_Mutation p.D377H 0.21 deleterious(0) unknown(0) TCGA-A7-A6VV-01 14 91211153 91211153 G A TTC7B Missense_Mutation p.L187F 0.56 deleterious(0) probably_damaging(0.997) TCGA-A7-A6VV-01 15 40231797 40231797 G A EIF2AK4 Missense_Mutation p.C79Y 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A6VV-01 15 65346468 65346468 G A RASL12 3'UTR 0.07 TCGA-A7-A6VV-01 15 72953603 72953603 A T GOLGA6B Splice_Site p.X189_splice 0.67 TCGA-A7-A6VV-01 15 75593048 75593048 A G DNM1P34 RNA 0.29 TCGA-A7-A6VV-01 15 78474374 78474374 G A ACSBG1 Silent p.Y336Y 0.37 TCGA-A7-A6VV-01 16 56868111 56868111 C T NUP93 Missense_Mutation p.R537W 0.37 deleterious(0) probably_damaging(1) TCGA-A7-A6VV-01 16 68344332 68344332 C T SLC7A6OS Missense_Mutation p.G126E 0.12 tolerated(0.86) benign(0.009) TCGA-A7-A6VV-01 17 1378240 1378240 C G MYO1C Missense_Mutation p.S554T 0.12 tolerated(0.3) benign(0.006) TCGA-A7-A6VV-01 17 36064930 36064930 C T HNF1B Missense_Mutation p.A445T 0.20 tolerated(0.09) benign(0.215) TCGA-A7-A6VV-01 17 7579533 7579533 G A TP53 Nonsense_Mutation p.Q52* 0.55 TCGA-A7-A6VV-01 17 79982976 79982976 C T LRRC45 Missense_Mutation p.R152C 0.18 deleterious(0) probably_damaging(1) TCGA-A7-A6VV-01 18 747961 747961 C T YES1 Silent p.P143P 0.17 TCGA-A7-A6VV-01 19 12127162 12127162 C G ZNF433 Missense_Mutation p.E174Q 0.29 tolerated(0.9) benign(0.065) TCGA-A7-A6VV-01 19 1278959 1278959 A G C19orf24 3'UTR 0.50 TCGA-A7-A6VV-01 19 13446706 13446706 C T CACNA1A Silent p.G332G 0.35 TCGA-A7-A6VV-01 19 39003080 39003080 C G RYR1 Silent p.L3143L 0.17 TCGA-A7-A6VV-01 19 49527250 49527250 G A CGB 5'UTR 0.27 TCGA-A7-A6VV-01 19 49564683 49564683 C A NTF4 Missense_Mutation p.R191L 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A6VV-01 19 50393149 50393149 G C IL4I1 Silent p.V516V 0.38 TCGA-A7-A6VV-01 19 8587371 8587371 G T MYO1F Missense_Mutation p.P1037H 0.44 deleterious(0.01) possibly_damaging(0.832) TCGA-A7-A6VV-01 1 11734717 11734717 C G MAD2L2 3'UTR 0.30 TCGA-A7-A6VV-01 1 152573404 152573404 G A LCE3C Missense_Mutation p.R66Q 0.56 tolerated_low_confidence(0.16) unknown(0) TCGA-A7-A6VV-01 1 156912544 156912544 G A ARHGEF11 Silent p.T1088T 0.08 TCGA-A7-A6VV-01 1 202888967 202888967 C - KLHL12 Frame_Shift_Del p.D89Tfs*10 0.24 TCGA-A7-A6VV-01 1 2524307 2524307 C G MMEL1 Missense_Mutation p.G656R 0.24 deleterious(0) probably_damaging(0.997) TCGA-A7-A6VV-01 20 19665779 19665779 C T SLC24A3 Silent p.N366N 0.16 TCGA-A7-A6VV-01 20 33879596 33879596 G A FAM83C Missense_Mutation p.T171M 0.67 deleterious(0.03) benign(0.315) TCGA-A7-A6VV-01 20 62187475 62187475 G A C20orf195 Silent p.L153L 0.19 TCGA-A7-A6VV-01 21 38877591 38877591 C A DYRK1A Nonsense_Mutation p.Y415* 0.31 TCGA-A7-A6VV-01 21 45095037 45095037 G A RRP1B Missense_Mutation p.G181E 0.74 deleterious(0) probably_damaging(1) TCGA-A7-A6VV-01 22 29735017 29735017 C T AP1B1 Missense_Mutation p.V709M 0.40 tolerated(0.19) benign(0.018) TCGA-A7-A6VV-01 2 114195296 114195296 C T CBWD2 5'UTR 0.69 TCGA-A7-A6VV-01 2 145187479 145187494 GCTGGACTCGTCTCCT - ZEB2 Frame_Shift_Del p.Q58Lfs*12 0.20 TCGA-A7-A6VV-01 2 15679451 15679451 G A NBAS Missense_Mutation p.R137W 0.07 deleterious(0) benign(0.033) TCGA-A7-A6VV-01 2 55515376 55515376 G A CCDC88A 3'UTR 0.05 TCGA-A7-A6VV-01 3 110830980 110830980 G C PVRL3 Missense_Mutation p.Q88H 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-A7-A6VV-01 3 128664765 128664765 G T RP11-723O4.6 Missense_Mutation p.H15Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VV-01 3 45943257 45943257 G A CCR9 Missense_Mutation p.R326Q 0.55 tolerated(0.74) benign(0.044) TCGA-A7-A6VV-01 5 1083916 1083916 T C SLC12A7 Missense_Mutation p.Q358R 0.20 tolerated(0.57) benign(0.001) TCGA-A7-A6VV-01 5 137143840 137143840 C A NPY6R RNA 0.66 TCGA-A7-A6VV-01 5 15500675 15500675 G A FBXL7 5'UTR 0.60 TCGA-A7-A6VV-01 5 37177795 37177795 G A C5orf42 Missense_Mutation p.T1943I 0.26 tolerated(0.09) benign(0.153) TCGA-A7-A6VV-01 6 152415566 152415566 G A ESR1 Silent p.K472K 0.25 TCGA-A7-A6VV-01 6 76599802 76599802 A G MYO6 Missense_Mutation p.Q896R 0.19 deleterious(0.04) unknown(0) TCGA-A7-A6VV-01 7 11446953 11446953 G A THSD7A Missense_Mutation p.S1299F 0.09 deleterious(0) probably_damaging(0.982) TCGA-A7-A6VV-01 7 151836787 151836787 G T KMT2C Missense_Mutation p.N4811K 0.48 probably_damaging(0.974) TCGA-A7-A6VV-01 7 20687243 20687243 C A ABCB5 Missense_Mutation p.A356D 0.15 deleterious(0) probably_damaging(0.982) TCGA-A7-A6VV-01 7 20687244 20687244 C A ABCB5 Silent p.A356A 0.15 TCGA-A7-A6VV-01 7 29519667 29519667 A C CHN2 Intron 0.30 TCGA-A7-A6VV-01 7 62809693 62809693 C T AC006455.1 5'UTR 0.18 TCGA-A7-A6VV-01 7 66264393 66264393 C T KCTD7 Missense_Mutation p.A271V 0.14 deleterious(0) possibly_damaging(0.897) TCGA-A7-A6VV-01 7 72727143 72727143 C T TRIM50 Missense_Mutation p.R413H 0.25 deleterious(0) probably_damaging(0.997) TCGA-A7-A6VV-01 7 94294131 94294131 G C PEG10 3'UTR 0.30 TCGA-A7-A6VV-01 8 145693739 145693739 C G KIFC2 Missense_Mutation p.Q280E 0.19 tolerated(0.73) benign(0.155) TCGA-A7-A6VV-01 8 48775965 48775965 C G PRKDC Missense_Mutation p.L1914F 0.22 probably_damaging(0.991) TCGA-A7-A6VV-01 8 69021785 69021785 A G PREX2 Missense_Mutation p.I1025V 0.15 tolerated(0.13) benign(0) TCGA-A7-A6VV-01 9 104071663 104071663 C A LPPR1 Missense_Mutation p.L186M 0.51 deleterious(0.02) benign(0.139) TCGA-A7-A6VV-01 X 115573898 115573898 C G SLC6A14 Missense_Mutation p.I130M 0.37 deleterious(0) probably_damaging(0.991) TCGA-A7-A6VV-01 X 48980004 48980004 G A GPKOW Silent p.F23F 0.19 TCGA-A7-A6VW-01 10 12139823 12139823 C T DHTKD1 Missense_Mutation p.P500L 0.47 deleterious(0) probably_damaging(0.979) TCGA-A7-A6VW-01 10 31816660 31816670 TTTTATTATGT - ZEB1 3'UTR 0.26 TCGA-A7-A6VW-01 10 49667834 49667834 C T ARHGAP22 Silent p.R200R 0.05 TCGA-A7-A6VW-01 10 93087 93087 C T TUBB8 Missense_Mutation p.M415I 0.17 tolerated_low_confidence(0.11) benign(0.032) TCGA-A7-A6VW-01 11 106681056 106681056 A G GUCY1A2 Missense_Mutation p.V452A 0.30 deleterious(0) probably_damaging(0.994) TCGA-A7-A6VW-01 11 5221287 5221287 A G OR51V1 Missense_Mutation p.I215T 0.71 tolerated(1) benign(0.001) TCGA-A7-A6VW-01 11 65055248 65055248 G A POLA2 Silent p.T356T 0.43 TCGA-A7-A6VW-01 11 6634271 6634271 C T TPP1 3'UTR 0.17 TCGA-A7-A6VW-01 12 112585899 112585899 G C TRAFD1 Missense_Mutation p.A317P 0.20 deleterious(0) probably_damaging(0.973) TCGA-A7-A6VW-01 12 122717413 122717413 G C VPS33A Missense_Mutation p.L515V 0.58 tolerated(0.08) possibly_damaging(0.651) TCGA-A7-A6VW-01 12 33538187 33538187 A C SYT10 Missense_Mutation p.Y373D 0.30 deleterious(0) probably_damaging(1) TCGA-A7-A6VW-01 13 111121652 111121652 A G COL4A2 Silent p.E728E 0.12 TCGA-A7-A6VW-01 13 20398714 20398714 A C ZMYM5 Nonsense_Mutation p.L638* 0.60 TCGA-A7-A6VW-01 13 74268142 74268142 C G KLF12 3'UTR 0.78 TCGA-A7-A6VW-01 14 23345162 23345162 A G LRP10 Silent p.A335A 0.57 TCGA-A7-A6VW-01 14 51561316 51561316 T A TRIM9 Silent p.S114S 0.44 TCGA-A7-A6VW-01 14 94780730 94780730 G A SERPINA6 Missense_Mutation p.R86W 0.63 deleterious(0) probably_damaging(0.988) TCGA-A7-A6VW-01 15 35275563 35275563 T A ZNF770 Missense_Mutation p.R25W 0.80 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VW-01 15 40587483 40587483 T C PLCB2 Missense_Mutation p.K567R 0.80 tolerated(0.91) possibly_damaging(0.724) TCGA-A7-A6VW-01 15 40590119 40590119 G T PLCB2 Silent p.S399S 0.58 TCGA-A7-A6VW-01 15 45491102 45491102 G A SHF Silent p.C57C 0.55 TCGA-A7-A6VW-01 15 75013178 75013178 G T CYP1A1 Intron 0.44 TCGA-A7-A6VW-01 15 75631340 75631340 A G COMMD4 Missense_Mutation p.K66E 0.35 deleterious(0.04) probably_damaging(0.919) TCGA-A7-A6VW-01 15 80473382 80473382 A G FAH Splice_Site p.X355_splice 0.25 TCGA-A7-A6VW-01 15 83689464 83689464 G C BTBD1 Missense_Mutation p.S369C 0.36 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VW-01 17 41244839 41244839 A - BRCA1 Frame_Shift_Del p.C903Wfs*97 0.38 TCGA-A7-A6VW-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.76 deleterious(0) probably_damaging(1) TCGA-A7-A6VW-01 18 43459100 43459100 A T EPG5 Nonsense_Mutation p.L1916* 0.55 TCGA-A7-A6VW-01 19 36395162 36395162 A C HCST 3'UTR 0.40 TCGA-A7-A6VW-01 19 50385554 50385554 A G TBC1D17 Missense_Mutation p.N232S 0.38 deleterious(0.02) possibly_damaging(0.463) TCGA-A7-A6VW-01 19 51581194 51581194 G A KLK14 3'UTR 0.32 TCGA-A7-A6VW-01 1 111506249 111506249 G A LRIF1 Missense_Mutation p.S21L 0.39 deleterious(0.01) possibly_damaging(0.519) TCGA-A7-A6VW-01 1 116379135 116379135 C A NHLH2 3'Flank 0.45 TCGA-A7-A6VW-01 1 158152933 158152933 C T CD1D Silent p.I291I 0.32 TCGA-A7-A6VW-01 1 160085654 160085654 G A ATP1A2 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.027) TCGA-A7-A6VW-01 1 176679166 176679166 C A PAPPA2 Missense_Mutation p.P1169T 0.33 deleterious(0.03) possibly_damaging(0.548) TCGA-A7-A6VW-01 1 192335310 192335310 C T RGS21 3'UTR 0.33 TCGA-A7-A6VW-01 1 201437649 201437649 A T PHLDA3 Missense_Mutation p.L89Q 0.43 tolerated(0.61) benign(0.003) TCGA-A7-A6VW-01 1 212180769 212180769 C T INTS7 Silent p.L193L 0.19 TCGA-A7-A6VW-01 1 226062046 226062046 T C TMEM63A Missense_Mutation p.I70V 0.41 tolerated(0.31) benign(0.009) TCGA-A7-A6VW-01 1 228402670 228402670 G C OBSCN Missense_Mutation p.E567Q 0.20 probably_damaging(0.972) TCGA-A7-A6VW-01 1 26607659 26607659 T C SH3BGRL3 3'UTR 0.09 TCGA-A7-A6VW-01 1 43110371 43110371 T C CCDC30 Missense_Mutation p.Y595H 0.07 deleterious(0.04) benign(0.002) TCGA-A7-A6VW-01 1 43637794 43637794 C G EBNA1BP2 Missense_Mutation p.G54A 0.29 tolerated_low_confidence(0.14) benign(0.003) TCGA-A7-A6VW-01 1 47682255 47682255 A C TAL1 3'UTR 0.46 TCGA-A7-A6VW-01 1 52841188 52841188 C A ORC1 Missense_Mutation p.K739N 0.44 tolerated(0.06) possibly_damaging(0.564) TCGA-A7-A6VW-01 1 55224231 55224231 G C PARS2 Missense_Mutation p.R202G 0.48 deleterious(0) probably_damaging(0.997) TCGA-A7-A6VW-01 21 45111382 45111382 C T RRP1B Silent p.A694A 0.33 TCGA-A7-A6VW-01 2 170082987 170082987 C T LRP2 Missense_Mutation p.G1780D 0.06 probably_damaging(0.979) TCGA-A7-A6VW-01 2 219826685 219826685 G A CDK5R2 3'UTR 0.71 TCGA-A7-A6VW-01 2 242166860 242166860 C T HDLBP 3'UTR 0.63 TCGA-A7-A6VW-01 2 36777121 36777121 G C CRIM1 3'UTR 0.57 TCGA-A7-A6VW-01 2 60684821 60684821 C T BCL11A 3'UTR 0.08 TCGA-A7-A6VW-01 2 60684823 60684823 T C BCL11A 3'UTR 0.08 TCGA-A7-A6VW-01 3 122631719 122631719 T C SEMA5B Missense_Mutation p.Y953C 0.31 deleterious(0.03) probably_damaging(1) TCGA-A7-A6VW-01 3 132320428 132320428 A - ACKR4 3'UTR 0.10 TCGA-A7-A6VW-01 3 13860792 13860792 G A WNT7A Silent p.N233N 0.56 TCGA-A7-A6VW-01 3 139173647 139173649 ACA - RBP2 In_Frame_Del p.V93del 0.31 TCGA-A7-A6VW-01 3 151078269 151078269 G T MED12L Missense_Mutation p.G910C 0.27 deleterious(0.03) benign(0.438) TCGA-A7-A6VW-01 3 183702549 183702549 C T ABCC5 Intron 0.08 TCGA-A7-A6VW-01 3 195619495 195619495 C T TNK2 Intron 0.46 TCGA-A7-A6VW-01 3 45804416 45804416 G A SLC6A20 Silent p.Y484Y 0.63 TCGA-A7-A6VW-01 3 9831211 9831211 A T TADA3 Missense_Mutation p.D182E 0.75 tolerated(0.43) benign(0.119) TCGA-A7-A6VW-01 4 106621041 106621041 C T INTS12 Missense_Mutation p.R41Q 0.55 tolerated(0.32) benign(0.031) TCGA-A7-A6VW-01 4 153247177 153247177 T A FBXW7 Missense_Mutation p.N542I 0.61 deleterious(0) probably_damaging(0.994) TCGA-A7-A6VW-01 4 164245495 164245495 G A NPY1R 3'UTR 0.50 TCGA-A7-A6VW-01 4 185552219 185552219 G T CASP3 Missense_Mutation p.D192E 0.16 deleterious(0) possibly_damaging(0.896) TCGA-A7-A6VW-01 4 57181824 57181824 T A KIAA1211 Missense_Mutation p.F719Y 0.72 deleterious(0) benign(0.294) TCGA-A7-A6VW-01 5 118506171 118506171 T C DMXL1 Silent p.S1895S 0.39 TCGA-A7-A6VW-01 5 148743617 148743617 A T PCYOX1L Missense_Mutation p.E105V 0.38 tolerated(0.26) possibly_damaging(0.649) TCGA-A7-A6VW-01 5 40760292 40760292 T G PRKAA1 3'Flank 0.34 TCGA-A7-A6VW-01 5 68525216 68525216 A G MRPS36 3'UTR 0.24 TCGA-A7-A6VW-01 5 78326724 78326724 T G DMGDH Missense_Mutation p.K539Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VW-01 5 840192 840192 C T ZDHHC11 Intron 0.19 TCGA-A7-A6VW-01 6 151670356 151670356 C A AKAP12 Missense_Mutation p.P277H 0.20 deleterious(0) possibly_damaging(0.844) TCGA-A7-A6VW-01 6 157527606 157527606 G C ARID1B Missense_Mutation p.K1777N 0.55 benign(0.311) TCGA-A7-A6VW-01 6 160200108 160200108 T C TCP1 Missense_Mutation p.D547G 0.27 tolerated_low_confidence(0.12) benign(0.14) TCGA-A7-A6VW-01 6 17293875 17293875 G C RBM24 3'UTR 0.48 TCGA-A7-A6VW-01 6 21595937 21595937 C T SOX4 Missense_Mutation p.S391F 0.60 deleterious(0) unknown(0) TCGA-A7-A6VW-01 6 90638598 90638598 A T BACH2 3'UTR 0.08 TCGA-A7-A6VW-01 7 100855579 100855579 C A PLOD3 Missense_Mutation p.G361V 0.36 deleterious(0.04) benign(0.441) TCGA-A7-A6VW-01 7 108212334 108212334 C T DNAJB9 Missense_Mutation p.P55L 0.34 deleterious(0) probably_damaging(1) TCGA-A7-A6VW-01 7 123264640 123264640 T C ASB15 Missense_Mutation p.Y157H 0.33 tolerated(0.11) benign(0.018) TCGA-A7-A6VW-01 7 151711771 151711771 C T GALNTL5 Nonsense_Mutation p.R357* 0.47 TCGA-A7-A6VW-01 7 18801869 18801869 C T HDAC9 Silent p.D711D 0.16 TCGA-A7-A6VW-01 7 23383465 23383465 C A IGF2BP3 Nonsense_Mutation p.E317* 0.22 TCGA-A7-A6VW-01 7 32908177 32908177 A C KBTBD2 3'UTR 0.30 TCGA-A7-A6VW-01 7 44579917 44579917 T C NPC1L1 Missense_Mutation p.I27V 0.36 tolerated(0.26) benign(0.001) TCGA-A7-A6VW-01 8 119936351 119936351 G C TNFRSF11B 3'UTR 0.38 TCGA-A7-A6VW-01 8 169361 169361 G A RPL23AP53 RNA 0.09 TCGA-A7-A6VW-01 8 87498718 87498718 G A RMDN1 Missense_Mutation p.H164Y 0.30 deleterious(0) possibly_damaging(0.828) TCGA-A7-A6VW-01 9 101533247 101533247 G A ANKS6 Missense_Mutation p.P635S 0.57 deleterious(0.02) probably_damaging(0.971) TCGA-A7-A6VW-01 9 117069962 117069962 G T COL27A1 Silent p.V1707V 0.70 TCGA-A7-A6VW-01 X 46740924 46740924 T A RP2 3'UTR 0.06 TCGA-A7-A6VW-01 X 48682704 48682704 G C HDAC6 Missense_Mutation p.Q1193H 0.74 deleterious(0) possibly_damaging(0.792) TCGA-A7-A6VW-01 X 85403889 85403889 A C DACH2 Missense_Mutation p.I89L 0.67 tolerated(0.26) benign(0.275) TCGA-A7-A6VX-01 10 102748425 102748425 A G C10orf2 Missense_Mutation p.E153G 0.11 deleterious(0.02) benign(0.067) TCGA-A7-A6VX-01 10 105110660 105110660 C T PCGF6 Missense_Mutation p.G55D 0.27 deleterious_low_confidence(0) benign(0.143) TCGA-A7-A6VX-01 10 105330856 105330856 C T NEURL1 Nonsense_Mutation p.Q105* 0.37 TCGA-A7-A6VX-01 10 12043791 12043791 G C UPF2 Nonsense_Mutation p.S513* 0.34 TCGA-A7-A6VX-01 10 129903599 129903599 C T MKI67 Missense_Mutation p.D2169N 0.16 tolerated(0.15) benign(0.426) TCGA-A7-A6VX-01 10 25465103 25465103 C G GPR158 Missense_Mutation p.R252G 0.77 deleterious(0.02) benign(0.035) TCGA-A7-A6VX-01 10 50373839 50373839 T G C10orf128 Missense_Mutation p.T81P 0.27 tolerated(0.09) benign(0.003) TCGA-A7-A6VX-01 10 55571336 55571336 C A PCDH15 Missense_Mutation p.D1473Y 0.18 tolerated_low_confidence(0.49) benign(0.032) TCGA-A7-A6VX-01 10 90438497 90438497 A C LIPF 3'UTR 0.15 TCGA-A7-A6VX-01 11 119228961 119228961 A G USP2 Silent p.D413D 0.33 TCGA-A7-A6VX-01 11 121016352 121016352 C A TECTA Missense_Mutation p.T1211N 0.41 deleterious(0) possibly_damaging(0.828) TCGA-A7-A6VX-01 11 133814238 133814238 C A IGSF9B Missense_Mutation p.A96S 0.37 tolerated(0.11) benign(0.101) TCGA-A7-A6VX-01 11 14865512 14865512 G T PDE3B Missense_Mutation p.M820I 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-A7-A6VX-01 11 17798992 17798992 T C KCNC1 Intron 0.15 TCGA-A7-A6VX-01 11 27362344 27362344 T C CCDC34 Missense_Mutation p.K269R 0.06 tolerated(0.16) possibly_damaging(0.838) TCGA-A7-A6VX-01 11 47463282 47463282 C T RAPSN Missense_Mutation p.A265T 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-A7-A6VX-01 11 56043792 56043792 C T OR5T1 Silent p.V226V 0.46 TCGA-A7-A6VX-01 11 63676486 63676486 G A MARK2 Missense_Mutation p.R715H 0.06 deleterious(0) possibly_damaging(0.721) TCGA-A7-A6VX-01 11 63886472 63886499 CCCCGGCGGAAGCCGTAGCTTTCCCTGC - FLRT1 3'UTR 0.28 TCGA-A7-A6VX-01 11 6624795 6624795 G A RRP8 5'UTR 0.83 TCGA-A7-A6VX-01 11 67270036 67270036 G C PITPNM1 Missense_Mutation p.P78A 0.29 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VX-01 11 70172393 70172393 A T PPFIA1 Missense_Mutation p.N211I 0.24 tolerated(0.06) benign(0.043) TCGA-A7-A6VX-01 11 75316827 75316827 T C MAP6 Intron 0.40 TCGA-A7-A6VX-01 11 76908606 76908606 G C MYO7A Missense_Mutation p.L1468F 0.14 deleterious(0) probably_damaging(1) TCGA-A7-A6VX-01 11 89880555 89880555 G C NAALAD2 Missense_Mutation p.K84N 0.32 tolerated(0.12) benign(0.379) TCGA-A7-A6VX-01 12 101488063 101488063 G C ANO4 Silent p.T542T 0.23 TCGA-A7-A6VX-01 12 11149763 11149763 G A TAS2R20 Missense_Mutation p.L238F 0.14 tolerated(1) benign(0.006) TCGA-A7-A6VX-01 12 112467091 112467091 C T NAA25 3'UTR 0.20 TCGA-A7-A6VX-01 12 120110200 120110201 - G PRKAB1 Frame_Shift_Ins p.G88Rfs*15 0.48 TCGA-A7-A6VX-01 12 120575738 120575738 C T GCN1L1 Silent p.L2120L 0.48 TCGA-A7-A6VX-01 12 120741569 120741569 T G SIRT4 Missense_Mutation p.S69A 0.44 deleterious(0) probably_damaging(1) TCGA-A7-A6VX-01 12 123332619 123332619 C T HIP1R Silent p.P45P 0.31 TCGA-A7-A6VX-01 12 20903643 20903643 G A SLCO1C1 Silent p.L611L 0.14 TCGA-A7-A6VX-01 12 40921566 40921566 C T MUC19 Intron 1.00 TCGA-A7-A6VX-01 12 4778947 4778947 A T NDUFA9 Missense_Mutation p.D255V 0.51 deleterious(0) probably_damaging(0.949) TCGA-A7-A6VX-01 12 4854665 4854665 C G GALNT8 Missense_Mutation p.R311G 0.16 tolerated(0.11) benign(0.206) TCGA-A7-A6VX-01 12 57593685 57593685 C T LRP1 Silent p.N3297N 0.46 TCGA-A7-A6VX-01 12 8248651 8248651 C T NECAP1 Nonsense_Mutation p.Q265* 0.18 TCGA-A7-A6VX-01 13 28868946 28868946 G T PAN3 3'Flank 0.92 TCGA-A7-A6VX-01 13 51523637 51523637 C T RNASEH2B Missense_Mutation p.S246L 0.67 tolerated(0.29) benign(0.02) TCGA-A7-A6VX-01 14 24524907 24524927 CAGGGCTCTGAAGTGCTAGAA - LRRC16B Splice_Site p.X228_splice 0.25 TCGA-A7-A6VX-01 14 50809643 50809643 G A CDKL1 Intron 0.21 TCGA-A7-A6VX-01 14 57877001 57877001 T G NAA30 3'UTR 0.84 TCGA-A7-A6VX-01 14 99637706 99637706 T A BCL11B 3'UTR 0.38 TCGA-A7-A6VX-01 15 101445731 101445731 G C ALDH1A3 Missense_Mutation p.D358H 0.08 deleterious(0) probably_damaging(0.991) TCGA-A7-A6VX-01 15 34032104 34032104 T A RYR3 Missense_Mutation p.D2576E 0.18 possibly_damaging(0.751) TCGA-A7-A6VX-01 15 58889273 58889273 C T ADAM10 3'UTR 0.83 TCGA-A7-A6VX-01 15 64385881 64385881 C A FAM96A Missense_Mutation p.Q29H 0.43 tolerated(0.06) benign(0.176) TCGA-A7-A6VX-01 15 91448638 91448638 C T MAN2A2 Missense_Mutation p.S97F 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-A7-A6VX-01 15 91448675 91448675 C T MAN2A2 Silent p.F109F 0.11 TCGA-A7-A6VX-01 15 91449217 91449217 C G MAN2A2 Missense_Mutation p.I226M 0.20 deleterious(0) probably_damaging(0.987) TCGA-A7-A6VX-01 15 91545296 91545296 C G VPS33B Silent p.V463V 0.11 TCGA-A7-A6VX-01 16 19127062 19127062 G A ITPRIPL2 Missense_Mutation p.E427K 0.14 tolerated(0.09) benign(0.09) TCGA-A7-A6VX-01 16 2104326 2104326 C T TSC2 Silent p.L122L 0.23 TCGA-A7-A6VX-01 16 21698740 21698740 A C OTOA Missense_Mutation p.K136Q 0.27 tolerated(0.46) benign(0.008) TCGA-A7-A6VX-01 16 2225344 2225344 G T TRAF7 Missense_Mutation p.A477S 0.21 deleterious(0.02) possibly_damaging(0.893) TCGA-A7-A6VX-01 16 2836554 2836554 C T PRSS33 5'UTR 0.17 TCGA-A7-A6VX-01 16 30991325 30991325 A C SETD1A Silent p.P1406P 0.27 TCGA-A7-A6VX-01 16 32896410 32896410 G A RP11-989E6.3 5'Flank 0.20 TCGA-A7-A6VX-01 16 56487287 56487288 TG - OGFOD1 Frame_Shift_Del p.H89Qfs*4 0.14 TCGA-A7-A6VX-01 16 89226827 89226827 C - ACSF3 3'Flank 0.27 TCGA-A7-A6VX-01 17 34803425 34803425 T C TBC1D3G Missense_Mutation p.K132E 0.34 deleterious(0) possibly_damaging(0.903) TCGA-A7-A6VX-01 17 38122663 38122663 C T GSDMA Missense_Mutation p.P122L 0.18 deleterious(0) benign(0.309) TCGA-A7-A6VX-01 17 38173186 38173186 G A CSF3 Missense_Mutation p.V200I 0.80 tolerated(0.1) benign(0.004) TCGA-A7-A6VX-01 17 40500507 40500507 G C STAT3 Missense_Mutation p.L10V 0.25 deleterious(0) probably_damaging(0.98) TCGA-A7-A6VX-01 17 4585802 4585802 G A PELP1 Missense_Mutation p.L213F 0.33 probably_damaging(0.975) TCGA-A7-A6VX-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.51 deleterious(0) probably_damaging(1) TCGA-A7-A6VX-01 17 79250865 79250865 G A SLC38A10 Missense_Mutation p.S232F 0.84 deleterious(0) possibly_damaging(0.908) TCGA-A7-A6VX-01 18 33691090 33691090 C T SLC39A6 Missense_Mutation p.E683K 0.27 deleterious(0.04) probably_damaging(0.947) TCGA-A7-A6VX-01 19 14887643 14887643 T C EMR2 5'UTR 0.05 TCGA-A7-A6VX-01 19 16254558 16254563 GGCCTC - HSH2D 5'UTR 0.23 TCGA-A7-A6VX-01 19 35660619 35660619 G C FXYD5 3'UTR 0.17 TCGA-A7-A6VX-01 19 3980859 3980859 G A EEF2 Missense_Mutation p.P377L 0.38 tolerated(0.56) benign(0.001) TCGA-A7-A6VX-01 19 40030748 40030748 C - EID2 5'UTR 0.33 TCGA-A7-A6VX-01 19 41712506 41712506 C T CYP2S1 3'UTR 0.32 TCGA-A7-A6VX-01 19 50100901 50100901 G T PRR12 Silent p.A1103A 0.20 TCGA-A7-A6VX-01 19 58868499 58868499 C A ZNF497 Missense_Mutation p.G168V 0.08 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VX-01 19 8953360 8953360 C A MBD3L1 Silent p.A2A 0.76 TCGA-A7-A6VX-01 1 100340266 100340266 G A AGL Missense_Mutation p.D328N 0.11 tolerated(0.18) benign(0.056) TCGA-A7-A6VX-01 1 101194891 101194891 C G VCAM1 Missense_Mutation p.T386S 0.15 tolerated(0.15) benign(0.214) TCGA-A7-A6VX-01 1 110775413 110775413 C T KCNC4 3'UTR 0.25 TCGA-A7-A6VX-01 1 111991811 111991811 A G WDR77 5'UTR 0.28 TCGA-A7-A6VX-01 1 115166247 115166247 T G DENND2C Missense_Mutation p.E275A 0.14 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VX-01 1 117556101 117556101 G A CD101 Silent p.L305L 0.19 TCGA-A7-A6VX-01 1 11894451 11894451 T C CLCN6 Missense_Mutation p.M562T 0.47 deleterious(0) possibly_damaging(0.872) TCGA-A7-A6VX-01 1 12336675 12336675 G C VPS13D Missense_Mutation p.Q1010H 0.22 probably_damaging(0.984) TCGA-A7-A6VX-01 1 1236020 1236020 C A ACAP3 Missense_Mutation p.D131Y 0.10 deleterious(0) possibly_damaging(0.88) TCGA-A7-A6VX-01 1 145585443 145585457 CTGGGCCCACTGGCC - PIAS3 In_Frame_Del p.L570_A574del 0.14 TCGA-A7-A6VX-01 1 151262935 151262935 C T ZNF687 Silent p.F1035F 0.23 TCGA-A7-A6VX-01 1 156626828 156626828 C G BCAN Missense_Mutation p.R717G 0.38 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VX-01 1 159409942 159409942 G C OR10J1 Missense_Mutation p.D132H 0.12 deleterious(0) possibly_damaging(0.658) TCGA-A7-A6VX-01 1 160788030 160788030 T A LY9 Silent p.L455L 0.17 TCGA-A7-A6VX-01 1 16754427 16754427 G A SPATA21 Intron 0.46 TCGA-A7-A6VX-01 1 17326902 17326902 G C ATP13A2 Missense_Mutation p.T278S 0.37 tolerated(0.08) probably_damaging(0.992) TCGA-A7-A6VX-01 1 201839929 201839929 G A IPO9 Silent p.Q784Q 0.15 TCGA-A7-A6VX-01 1 202888895 202888905 GCAGACAGGCT - KLHL12 Frame_Shift_Del p.A110Sfs*11 0.13 TCGA-A7-A6VX-01 1 226032893 226032893 C T EPHX1 Silent p.L405L 0.12 TCGA-A7-A6VX-01 1 226033024 226033024 C A EPHX1 Missense_Mutation p.F448L 0.13 deleterious(0.02) possibly_damaging(0.557) TCGA-A7-A6VX-01 1 226111826 226111826 C A RP4-559A3.7 5'UTR 0.11 TCGA-A7-A6VX-01 1 243319693 243319693 T G CEP170 Silent p.S1247S 0.08 TCGA-A7-A6VX-01 1 248813372 248813372 T C OR2T27 Missense_Mutation p.K272E 0.25 tolerated(0.1) possibly_damaging(0.889) TCGA-A7-A6VX-01 1 36752784 36752784 G A THRAP3 Missense_Mutation p.G318D 0.15 tolerated(0.22) probably_damaging(0.996) TCGA-A7-A6VX-01 20 47877044 47877044 C G ZNFX1 Missense_Mutation p.G791A 0.30 tolerated(0.59) benign(0.071) TCGA-A7-A6VX-01 20 49197905 49197905 G T PTPN1 Missense_Mutation p.D398Y 0.51 deleterious(0.02) benign(0.092) TCGA-A7-A6VX-01 22 18028493 18028493 C A CECR2 Silent p.G1151G 0.26 TCGA-A7-A6VX-01 22 21538402 21538402 A C FAM230B RNA 0.09 TCGA-A7-A6VX-01 22 28194910 28194912 TGT - MN1 In_Frame_Del p.Q550del 0.10 TCGA-A7-A6VX-01 22 42479255 42479255 G A SMDT1 3'UTR 0.32 TCGA-A7-A6VX-01 22 50895099 50895099 T G SBF1 Missense_Mutation p.K1303T 0.26 tolerated(0.09) benign(0.043) TCGA-A7-A6VX-01 2 116601745 116601745 G A DPP10 3'Flank 0.34 TCGA-A7-A6VX-01 2 120438429 120438429 C T TMEM177 5'UTR 0.14 TCGA-A7-A6VX-01 2 152484080 152484080 T C NEB Missense_Mutation p.N3367S 0.41 benign(0.215) TCGA-A7-A6VX-01 2 166615366 166615366 G T GALNT3 Missense_Mutation p.T361N 0.27 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VX-01 2 18112261 18112261 C T KCNS3 5'UTR 0.10 TCGA-A7-A6VX-01 2 202357330 202357330 G T ALS2CR11 Nonsense_Mutation p.S1245* 0.36 TCGA-A7-A6VX-01 2 32475828 32475828 G A NLRC4 Silent p.L369L 0.11 TCGA-A7-A6VX-01 2 85051150 85051150 T C TRABD2A Missense_Mutation p.K372E 0.31 deleterious(0.03) benign(0.342) TCGA-A7-A6VX-01 2 89442256 89442256 C A IGKV3-20 Missense_Mutation p.S50I 0.08 tolerated(0.05) benign(0.071) TCGA-A7-A6VX-01 3 107524652 107524652 T G BBX 3'UTR 0.22 TCGA-A7-A6VX-01 3 125248180 125248180 C T OSBPL11 3'UTR 0.27 TCGA-A7-A6VX-01 3 12875499 12875499 T C CAND2 3'UTR 0.38 TCGA-A7-A6VX-01 3 136646954 136646954 C T NCK1 Silent p.S37S 0.05 TCGA-A7-A6VX-01 3 14105881 14105881 C T TPRXL Missense_Mutation p.P69S 0.31 unknown(0) TCGA-A7-A6VX-01 3 152882262 152882262 C T RAP2B 3'UTR 0.17 TCGA-A7-A6VX-01 3 158364707 158364707 C T GFM1 Silent p.S181S 0.46 TCGA-A7-A6VX-01 3 169525416 169525416 C A LRRC34 Missense_Mutation p.W113C 0.14 tolerated(0.16) benign(0.046) TCGA-A7-A6VX-01 3 17056381 17056381 A C PLCL2 Missense_Mutation p.K873T 0.32 deleterious(0) probably_damaging(0.946) TCGA-A7-A6VX-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.79 tolerated(0.11) possibly_damaging(0.529) TCGA-A7-A6VX-01 3 179576914 179576914 C A PEX5L Missense_Mutation p.S253I 0.11 deleterious(0.02) benign(0.374) TCGA-A7-A6VX-01 3 182925422 182925422 G A MCF2L2 Missense_Mutation p.H896Y 0.08 deleterious(0.01) benign(0.296) TCGA-A7-A6VX-01 3 49059963 49059963 C G NDUFAF3 Missense_Mutation p.Q88E 0.46 deleterious(0.01) probably_damaging(0.95) TCGA-A7-A6VX-01 3 52392619 52392619 G C DNAH1 Missense_Mutation p.E1378Q 0.28 probably_damaging(0.998) TCGA-A7-A6VX-01 3 52853481 52853481 G T ITIH4 Missense_Mutation p.Q669K 0.32 tolerated(0.94) benign(0) TCGA-A7-A6VX-01 3 72425446 72425446 C T RYBP 3'UTR 0.19 TCGA-A7-A6VX-01 4 48990663 48990663 C A CWH43 Silent p.T71T 0.10 TCGA-A7-A6VX-01 4 55605838 55605838 G A KIT 3'UTR 0.08 TCGA-A7-A6VX-01 4 56301582 56301582 C T CLOCK Silent p.%3D 0.22 TCGA-A7-A6VX-01 4 77317579 77317579 G A CCDC158 Missense_Mutation p.S44L 0.40 deleterious(0) benign(0.164) TCGA-A7-A6VX-01 4 83772682 83772684 CTC - SEC31A In_Frame_Del p.G743del 0.35 TCGA-A7-A6VX-01 4 88903799 88903799 C G SPP1 Missense_Mutation p.D232E 0.22 tolerated(0.23) probably_damaging(0.935) TCGA-A7-A6VX-01 5 111497469 111497469 G A EPB41L4A 3'Flank 0.22 TCGA-A7-A6VX-01 5 140202930 140202930 C G PCDHA5 Missense_Mutation p.H524D 0.29 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-A7-A6VX-01 5 150276474 150276474 A G ZNF300 Silent p.H125H 0.19 TCGA-A7-A6VX-01 5 153190643 153190643 C A GRIA1 Missense_Mutation p.P870H 0.27 tolerated_low_confidence(0.49) possibly_damaging(0.751) TCGA-A7-A6VX-01 5 157002624 157002624 C G ADAM19 Missense_Mutation p.E27D 0.28 tolerated(0.46) benign(0.001) TCGA-A7-A6VX-01 5 175816329 175816329 C A HIGD2A Intron 0.22 TCGA-A7-A6VX-01 5 176734790 176734790 G C MXD3 Nonsense_Mutation p.S166* 0.19 TCGA-A7-A6VX-01 5 39122498 39122498 C G FYB Missense_Mutation p.G703A 0.19 deleterious(0.01) benign(0.065) TCGA-A7-A6VX-01 6 107980091 107980091 A - SOBP 3'UTR 0.40 TCGA-A7-A6VX-01 6 116943945 116943945 C T RSPH4A Missense_Mutation p.S234F 0.07 deleterious(0.01) possibly_damaging(0.854) TCGA-A7-A6VX-01 6 137813881 137813881 C T OLIG3 3'UTR 0.21 TCGA-A7-A6VX-01 6 1612308 1612308 C T FOXC1 Missense_Mutation p.S543F 0.05 deleterious(0) probably_damaging(0.962) TCGA-A7-A6VX-01 6 170156836 170156836 G C ERMARD Missense_Mutation p.E147Q 0.07 deleterious(0.02) probably_damaging(0.968) TCGA-A7-A6VX-01 6 26157324 26157324 G T HIST1H1E 3'UTR 0.28 TCGA-A7-A6VX-01 6 33179627 33179627 G A RING1 Missense_Mutation p.A323T 0.27 tolerated(0.73) unknown(0) TCGA-A7-A6VX-01 6 36199587 36199588 - A BRPF3 3'UTR 0.12 TCGA-A7-A6VX-01 6 36742843 36742843 C G CPNE5 Splice_Site p.X211_splice 0.33 TCGA-A7-A6VX-01 6 40360461 40360461 C G LRFN2 Missense_Mutation p.G531R 0.33 deleterious(0) probably_damaging(1) TCGA-A7-A6VX-01 6 42712870 42712870 G T TBCC Missense_Mutation p.N314K 0.28 deleterious(0.01) possibly_damaging(0.773) TCGA-A7-A6VX-01 6 43111345 43111345 G A PTK7 Missense_Mutation p.M754I 0.47 deleterious(0.04) benign(0.212) TCGA-A7-A6VX-01 6 43325391 43325391 C G ZNF318 Missense_Mutation p.D221H 0.21 probably_damaging(0.998) TCGA-A7-A6VX-01 7 104783648 104783675 CTTCTATTATTTTCCTTTCAGCTTCTCG - SRPK2 Frame_Shift_Del p.R306Kfs*20 0.34 TCGA-A7-A6VX-01 7 127668002 127668002 C T LRRC4 3'UTR 0.33 TCGA-A7-A6VX-01 7 144062341 144062341 G T ARHGEF5 Missense_Mutation p.G860V 0.12 tolerated(0.09) benign(0.158) TCGA-A7-A6VX-01 7 150174397 150174397 G T GIMAP8 Silent p.R509R 0.27 TCGA-A7-A6VX-01 7 150846205 150846220 TCTGAGCTGTACACCT - GBX1 Frame_Shift_Del p.K183Mfs*49 0.38 TCGA-A7-A6VX-01 7 151960214 151960214 G A KMT2C Nonsense_Mutation p.Q396* 0.46 TCGA-A7-A6VX-01 7 45757120 45757120 T C ADCY1 3'UTR 0.33 TCGA-A7-A6VX-01 7 55214313 55214313 G A EGFR Missense_Mutation p.A147T 0.35 deleterious(0.02) benign(0.026) TCGA-A7-A6VX-01 7 6201847 6201847 A C CYTH3 3'UTR 0.38 TCGA-A7-A6VX-01 7 99161754 99161754 A G ZNF655 Intron 0.45 TCGA-A7-A6VX-01 8 133090146 133090146 G A HHLA1 Missense_Mutation p.P369L 0.40 tolerated(0.05) benign(0.015) TCGA-A7-A6VX-01 8 3351224 3351224 A C CSMD1 Missense_Mutation p.F457V 0.18 probably_damaging(0.995) TCGA-A7-A6VX-01 8 38245472 38245472 C G LETM2 5'UTR 0.77 TCGA-A7-A6VX-01 8 48826536 48826536 T A PRKDC Missense_Mutation p.K902N 0.21 probably_damaging(1) TCGA-A7-A6VX-01 9 115142437 115142437 G C HSDL2 5'UTR 0.19 TCGA-A7-A6VX-01 9 130101985 130101985 G C GARNL3 Missense_Mutation p.V364L 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-A7-A6VX-01 9 131971204 131971204 T C RP11-247A12.2 RNA 0.35 TCGA-A7-A6VX-01 9 34976634 34976634 C A KIAA1045 Missense_Mutation p.A249D 0.10 tolerated(0.2) benign(0.433) TCGA-A7-A6VX-01 9 6534748 6534748 C T GLDC Nonsense_Mutation p.W960* 0.59 TCGA-A7-A6VX-01 9 86502104 86502104 C A KIF27 Missense_Mutation p.K697N 0.24 tolerated(0.1) benign(0.13) TCGA-A7-A6VX-01 9 97863936 97863936 G A FANCC 3'UTR 0.25 TCGA-A7-A6VX-01 X 106819591 106819591 G A FRMPD3 Missense_Mutation p.C481Y 0.12 deleterious(0.01) benign(0.311) TCGA-A7-A6VX-01 X 107415713 107415713 A G COL4A6 Missense_Mutation p.L1064P 0.39 possibly_damaging(0.495) TCGA-A7-A6VX-01 X 123499676 123499676 T G SH2D1A Splice_Site p.X67_splice 0.40 TCGA-A7-A6VX-01 X 123699336 123699336 C A TENM1 Nonsense_Mutation p.G718* 0.38 TCGA-A7-A6VX-01 X 135747871 135747901 AACCCATTTATAGAGTATTGTAAACAACACA - ARHGEF6 3'UTR 0.17 TCGA-A7-A6VX-01 X 22051162 22051162 G A PHEX Silent p.K13K 0.21 TCGA-A7-A6VX-01 X 46913989 46913989 C T JADE3 Nonsense_Mutation p.R468* 0.31 TCGA-A7-A6VX-01 X 46913990 46913990 G C JADE3 Missense_Mutation p.R468P 0.31 deleterious(0) probably_damaging(0.995) TCGA-A7-A6VX-01 X 47705571 47705571 G A ZNF81 5'UTR 0.19 TCGA-A7-A6VX-01 X 64722728 64722728 A G ZC3H12B Missense_Mutation p.Q717R 0.08 tolerated(0.07) possibly_damaging(0.787) TCGA-A7-A6VX-01 X 75650521 75650521 C G MAGEE1 Nonsense_Mutation p.S733* 0.27 TCGA-A7-A6VY-01 10 105885498 105885498 A T SFR1 3'UTR 0.67 TCGA-A7-A6VY-01 10 121591035 121591035 C T MCMBP Missense_Mutation p.R627K 0.23 deleterious(0) probably_damaging(0.942) TCGA-A7-A6VY-01 10 26409675 26409675 C A MYO3A Missense_Mutation p.A616E 0.31 tolerated(0.19) benign(0.012) TCGA-A7-A6VY-01 10 50824548 50824548 G T CHAT Missense_Mutation p.G96V 0.12 deleterious_low_confidence(0) benign(0) TCGA-A7-A6VY-01 10 64572309 64572309 A G EGR2 3'UTR 0.29 TCGA-A7-A6VY-01 10 75531586 75531586 A G SEC24C 3'UTR 0.33 TCGA-A7-A6VY-01 10 81056347 81056347 G A ZMIZ1 Missense_Mutation p.M450I 0.22 benign(0.004) TCGA-A7-A6VY-01 10 95159202 95159202 C G MYOF Missense_Mutation p.D390H 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-A7-A6VY-01 11 2181051 2181051 C T INS 3'UTR 0.38 TCGA-A7-A6VY-01 11 27742001 27742001 A G RP11-587D21.4 Intron 0.18 TCGA-A7-A6VY-01 11 57102013 57102013 C G SSRP1 Missense_Mutation p.R55P 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-A7-A6VY-01 11 57947289 57947289 G A OR9Q1 Missense_Mutation p.A125T 0.33 deleterious(0) possibly_damaging(0.858) TCGA-A7-A6VY-01 11 64010721 64010721 G C FKBP2 Missense_Mutation p.Q74H 0.09 deleterious(0.01) benign(0.076) TCGA-A7-A6VY-01 11 83170885 83170885 C T DLG2 Nonsense_Mutation p.W968* 0.31 TCGA-A7-A6VY-01 11 83180325 83180325 C T DLG2 Silent p.E846E 0.22 TCGA-A7-A6VY-01 11 93463071 93463071 G A KIAA1731 Missense_Mutation p.V2535I 0.57 tolerated(0.1) possibly_damaging(0.626) TCGA-A7-A6VY-01 12 104122672 104122672 T G STAB2 Missense_Mutation p.Y1661D 0.28 deleterious(0.02) probably_damaging(1) TCGA-A7-A6VY-01 12 132329692 132329692 G C MMP17 Missense_Mutation p.S333T 0.26 tolerated(0.47) benign(0.009) TCGA-A7-A6VY-01 12 31600523 31600523 G A DENND5B Missense_Mutation p.P604S 0.22 tolerated(0.32) possibly_damaging(0.781) TCGA-A7-A6VY-01 12 53045606 53045606 G T KRT2 Silent p.G107G 0.32 TCGA-A7-A6VY-01 12 56527941 56527941 T G ESYT1 Missense_Mutation p.I517M 0.29 deleterious(0.01) possibly_damaging(0.459) TCGA-A7-A6VY-01 12 57605086 57605086 C T LRP1 Silent p.L4348L 0.44 TCGA-A7-A6VY-01 14 21216166 21216166 G C EDDM3A Missense_Mutation p.E143Q 0.54 tolerated(0.15) benign(0.404) TCGA-A7-A6VY-01 14 21790140 21790140 G A RPGRIP1 Missense_Mutation p.R580K 0.34 deleterious_low_confidence(0.04) probably_damaging(0.917) TCGA-A7-A6VY-01 14 22971272 22971272 T A TRAJ38 Missense_Mutation p.N20K 0.24 unknown(0) TCGA-A7-A6VY-01 14 39818044 39818044 T G CTAGE5 Missense_Mutation p.F709C 0.37 deleterious(0.01) probably_damaging(0.94) TCGA-A7-A6VY-01 14 55903673 55903673 G A TBPL2 Silent p.L72L 0.37 TCGA-A7-A6VY-01 15 42175668 42175668 C G SPTBN5 Missense_Mutation p.V513L 0.20 benign(0.001) TCGA-A7-A6VY-01 15 44158400 44158400 T C WDR76 Missense_Mutation p.I564T 0.09 deleterious(0.04) benign(0.015) TCGA-A7-A6VY-01 15 65943269 65943269 G A SLC24A1 Missense_Mutation p.V928I 0.27 benign(0.286) TCGA-A7-A6VY-01 15 72030226 72030226 A G THSD4 Missense_Mutation p.R596G 0.31 tolerated(0.32) benign(0) TCGA-A7-A6VY-01 15 73996309 73996309 G C CD276 Missense_Mutation p.G348A 0.40 tolerated(0.2) possibly_damaging(0.688) TCGA-A7-A6VY-01 15 89055873 89055873 C T DET1 3'UTR 0.25 TCGA-A7-A6VY-01 15 90764638 90764638 G A SEMA4B Missense_Mutation p.G212E 0.25 deleterious(0) probably_damaging(1) TCGA-A7-A6VY-01 16 1129387 1129387 G A SSTR5 Silent p.P173P 0.46 TCGA-A7-A6VY-01 16 1621515 1621515 G C IFT140 Silent p.L515L 0.28 TCGA-A7-A6VY-01 16 50746124 50746124 A T NOD2 Nonsense_Mutation p.K768* 0.21 TCGA-A7-A6VY-01 16 67244564 67244564 G C AC040160.1 Missense_Mutation p.R146G 0.58 deleterious(0) possibly_damaging(0.66) TCGA-A7-A6VY-01 16 69736031 69736031 T C NFAT5 3'UTR 0.31 TCGA-A7-A6VY-01 16 89351844 89351844 T C ANKRD11 Missense_Mutation p.K369R 0.07 possibly_damaging(0.899) TCGA-A7-A6VY-01 16 9856489 9856489 A G GRIN2A 3'UTR 0.29 TCGA-A7-A6VY-01 17 29490289 29490289 G C NF1 Missense_Mutation p.R125P 0.49 tolerated(0.21) probably_damaging(0.986) TCGA-A7-A6VY-01 17 42285128 42285128 C G UBTF Missense_Mutation p.S655T 0.36 tolerated(0.14) benign(0.041) TCGA-A7-A6VY-01 17 45360784 45360784 C A ITGB3 Missense_Mutation p.P77Q 0.57 tolerated(0.59) benign(0.007) TCGA-A7-A6VY-01 17 60023355 60023355 G C MED13 3'UTR 0.29 TCGA-A7-A6VY-01 17 62225684 62225684 C A TEX2 3'UTR 0.26 TCGA-A7-A6VY-01 17 62553778 62553778 G C SMURF2 Nonsense_Mutation p.S460* 0.32 TCGA-A7-A6VY-01 17 6329901 6329901 C - AIPL1 Intron 0.39 TCGA-A7-A6VY-01 17 65733742 65733742 C G NOL11 Missense_Mutation p.A446G 0.17 deleterious(0.04) benign(0.285) TCGA-A7-A6VY-01 17 71192818 71192818 G A COG1 Missense_Mutation p.S163N 0.61 tolerated(0.3) benign(0.002) TCGA-A7-A6VY-01 17 7577044 7577045 - T TP53 Frame_Shift_Ins p.L299Afs*7 0.27 TCGA-A7-A6VY-01 18 14763831 14763831 G A ANKRD30B Missense_Mutation p.A323T 0.22 deleterious(0.01) possibly_damaging(0.805) TCGA-A7-A6VY-01 18 66564834 66564834 G A CCDC102B Intron 0.34 TCGA-A7-A6VY-01 19 12874240 12874240 C A HOOK2 Missense_Mutation p.M672I 0.23 deleterious(0.03) benign(0.257) TCGA-A7-A6VY-01 19 17327018 17327018 C A USE1 Missense_Mutation p.A91D 0.41 tolerated(0.07) possibly_damaging(0.451) TCGA-A7-A6VY-01 19 31766916 31766916 G C TSHZ3 3'UTR 0.08 TCGA-A7-A6VY-01 19 45883332 45883334 ACC - PPP1R13L 3'UTR 0.36 TCGA-A7-A6VY-01 19 48685883 48685883 C A C19orf68 Silent p.R149R 0.38 TCGA-A7-A6VY-01 19 6960385 6960385 G A EMR4P RNA 0.20 TCGA-A7-A6VY-01 19 7694384 7694384 G A XAB2 Silent p.P10P 0.20 TCGA-A7-A6VY-01 1 115600204 115600204 G A TSPAN2 Missense_Mutation p.S157F 0.29 tolerated(0.33) benign(0.134) TCGA-A7-A6VY-01 1 120468276 120468276 C G NOTCH2 Missense_Mutation p.S1388T 0.36 tolerated(1) benign(0.001) TCGA-A7-A6VY-01 1 151551232 151551232 G A TUFT1 Missense_Mutation p.R285Q 0.12 deleterious(0) possibly_damaging(0.889) TCGA-A7-A6VY-01 1 152185788 152185788 C T HRNR Missense_Mutation p.G2773S 0.24 unknown(0) TCGA-A7-A6VY-01 1 156043017 156043017 A G MEX3A 3'UTR 0.18 TCGA-A7-A6VY-01 1 156263941 156263941 C G C1orf85 Silent p.L222L 0.22 TCGA-A7-A6VY-01 1 161087843 161087843 G A PFDN2 5'UTR 0.16 TCGA-A7-A6VY-01 1 161643277 161643277 A G FCGR2B Intron 0.37 TCGA-A7-A6VY-01 1 186880387 186880387 C T PLA2G4A Missense_Mutation p.P142S 0.35 tolerated(0.56) benign(0.045) TCGA-A7-A6VY-01 1 197126621 197126621 G A ZBTB41 3'UTR 0.43 TCGA-A7-A6VY-01 1 205495925 205495925 T A CDK18 Missense_Mutation p.L260Q 0.31 deleterious(0) probably_damaging(1) TCGA-A7-A6VY-01 1 212977766 212977766 G C TATDN3 Missense_Mutation p.L142F 0.30 deleterious(0) probably_damaging(0.991) TCGA-A7-A6VY-01 1 231954943 231954943 A C DISC1 Intron 0.04 TCGA-A7-A6VY-01 1 248224305 248224305 G A OR2L3 Missense_Mutation p.G108S 0.06 deleterious(0.03) benign(0.079) TCGA-A7-A6VY-01 1 31907196 31907196 C G SERINC2 3'UTR 0.45 TCGA-A7-A6VY-01 1 37948141 37948141 G C ZC3H12A Missense_Mutation p.G309R 0.28 deleterious(0) probably_damaging(0.992) TCGA-A7-A6VY-01 1 6266621 6266621 T A RNF207 Missense_Mutation p.L9Q 0.43 deleterious(0) possibly_damaging(0.759) TCGA-A7-A6VY-01 20 1289746 1289746 G T SNPH 3'UTR 0.42 TCGA-A7-A6VY-01 20 2127343 2127343 G T STK35 3'UTR 0.23 TCGA-A7-A6VY-01 20 42249498 42249498 A T IFT52 Missense_Mutation p.D234V 0.21 deleterious(0) possibly_damaging(0.703) TCGA-A7-A6VY-01 20 58547113 58547113 G C CDH26 Missense_Mutation p.D110H 0.21 deleterious(0) probably_damaging(0.988) TCGA-A7-A6VY-01 21 41447034 41447034 G T DSCAM Silent p.V1606V 0.22 TCGA-A7-A6VY-01 21 44840275 44840275 G C SIK1 Missense_Mutation p.Q271E 0.11 deleterious(0) probably_damaging(0.931) TCGA-A7-A6VY-01 21 45825882 45825882 A G TRPM2 Missense_Mutation p.K918E 0.29 deleterious(0.01) possibly_damaging(0.528) TCGA-A7-A6VY-01 22 40806509 40806509 G C MKL1 3'UTR 0.57 TCGA-A7-A6VY-01 2 106498125 106498125 A G NCK2 Missense_Mutation p.N190D 0.26 tolerated(0.25) benign(0.19) TCGA-A7-A6VY-01 2 128381839 128381839 C G MYO7B Missense_Mutation p.L1305V 0.36 deleterious(0) possibly_damaging(0.625) TCGA-A7-A6VY-01 2 131331938 131331938 A C AC140481.2 Missense_Mutation p.K5Q 0.14 tolerated(0.34) possibly_damaging(0.555) TCGA-A7-A6VY-01 2 131798931 131798931 G A ARHGEF4 Missense_Mutation p.M411I 0.27 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VY-01 2 133540558 133540558 G C NCKAP5 Missense_Mutation p.H1276D 0.36 deleterious(0) benign(0.012) TCGA-A7-A6VY-01 2 166894581 166894581 C T SCN1A Missense_Mutation p.G884D 0.34 deleterious(0) probably_damaging(1) TCGA-A7-A6VY-01 2 202141631 202141631 C T CASP8 Missense_Mutation p.R307W 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-A7-A6VY-01 2 202510115 202510115 G C MPP4 Missense_Mutation p.Q578E 0.22 tolerated(0.19) benign(0.181) TCGA-A7-A6VY-01 2 202590095 202590095 C A ALS2 Missense_Mutation p.G1111C 0.39 deleterious(0) probably_damaging(1) TCGA-A7-A6VY-01 2 205986500 205986500 C G PARD3B Missense_Mutation p.A331G 0.21 tolerated(0.27) benign(0.002) TCGA-A7-A6VY-01 2 206662486 206662486 T C NRP2 3'UTR 0.30 TCGA-A7-A6VY-01 2 209138425 209138452 ATGAGGAACTCCAGCGGCGCTCTTCAGC - PIKFYVE Frame_Shift_Del p.E98* 0.23 TCGA-A7-A6VY-01 2 219603432 219603432 G T TTLL4 Missense_Mutation p.A345S 0.30 tolerated(0.25) benign(0.013) TCGA-A7-A6VY-01 2 73482198 73482198 C T FBXO41 3'UTR 0.08 TCGA-A7-A6VY-01 2 74702182 74702182 C T CCDC142 Silent p.E612E 0.29 TCGA-A7-A6VY-01 3 158387266 158387266 C G LXN Missense_Mutation p.R109T 0.28 deleterious(0.01) benign(0.204) TCGA-A7-A6VY-01 3 44763060 44763060 C G ZNF502 Missense_Mutation p.H251D 0.46 tolerated(0.24) benign(0.035) TCGA-A7-A6VY-01 3 47364133 47364133 G T KLHL18 Silent p.L112L 0.32 TCGA-A7-A6VY-01 3 63938062 63938071 AATATTTGGT - ATXN7 Frame_Shift_Del p.I135Sfs*85 0.17 TCGA-A7-A6VY-01 3 81754659 81754659 A T GBE1 Missense_Mutation p.D83E 0.48 tolerated(0.19) benign(0.108) TCGA-A7-A6VY-01 3 96706450 96706450 G A EPHA6 Missense_Mutation p.D243N 0.30 deleterious(0) probably_damaging(0.999) TCGA-A7-A6VY-01 4 109684095 109684095 G C ETNPPL 5'UTR 0.40 TCGA-A7-A6VY-01 4 120221693 120221693 C T C4orf3 Missense_Mutation p.E133K 0.24 tolerated_low_confidence(0.06) benign(0.001) TCGA-A7-A6VY-01 5 130797530 130797530 G A RAPGEF6 Missense_Mutation p.T911I 0.33 deleterious(0.01) probably_damaging(1) TCGA-A7-A6VY-01 5 171766698 171766698 G A SH3PXD2B Missense_Mutation p.P471S 0.12 deleterious(0.01) probably_damaging(1) TCGA-A7-A6VY-01 5 176662838 176662838 G A NSD1 Silent p.K1271K 0.23 TCGA-A7-A6VY-01 5 33989263 33989263 C T AMACR Missense_Mutation p.E362K 0.29 tolerated(0.48) benign(0.005) TCGA-A7-A6VY-01 5 44305235 44305235 G C FGF10 Silent p.T163T 0.36 TCGA-A7-A6VY-01 6 117252886 117252886 A C RFX6 3'UTR 0.30 TCGA-A7-A6VY-01 6 137322938 137322938 T A IL20RA Missense_Mutation p.E473D 0.36 tolerated(0.06) benign(0.085) TCGA-A7-A6VY-01 6 36334674 36334674 G C ETV7 Missense_Mutation p.P296A 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-A7-A6VY-01 6 37358563 37358580 CTGCCAGGTAGTGCGAGC - RNF8 3'UTR 0.59 TCGA-A7-A6VY-01 6 73935020 73935020 C A KHDC1L Nonsense_Mutation p.G38* 0.18 TCGA-A7-A6VY-01 7 112460376 112460376 T G C7orf60 3'UTR 0.28 TCGA-A7-A6VY-01 7 126746550 126746550 C A GRM8 Missense_Mutation p.G243C 0.22 deleterious(0.01) probably_damaging(1) TCGA-A7-A6VY-01 7 138589805 138589805 G T KIAA1549 Missense_Mutation p.N1161K 0.26 deleterious(0) probably_damaging(1) TCGA-A7-A6VY-01 7 1855484 1855484 C T MAD1L1 3'UTR 0.21 TCGA-A7-A6VY-01 7 6485645 6485645 G A DAGLB Silent p.L62L 0.26 TCGA-A7-A6VY-01 7 72430666 72430666 C G TRIM74 Silent p.L204L 0.21 TCGA-A7-A6VY-01 7 97937113 97937113 T C BAIAP2L1 Missense_Mutation p.T351A 0.26 tolerated(0.78) benign(0.168) TCGA-A7-A6VY-01 7 99245935 99245935 C G CYP3A5 Missense_Mutation p.G501A 0.22 tolerated(0.16) benign(0.216) TCGA-A7-A6VY-01 7 99473950 99473950 G A OR2AE1 Missense_Mutation p.A236V 0.12 deleterious(0.02) benign(0.094) TCGA-A7-A6VY-01 8 124204155 124204155 T C FAM83A Missense_Mutation p.V198A 0.23 tolerated(0.07) benign(0.032) TCGA-A7-A6VY-01 8 144891843 144891843 G C SCRIB Missense_Mutation p.P526A 0.17 benign(0.005) TCGA-A7-A6VY-01 8 145625017 145625017 C T CPSF1 Silent p.Q401Q 0.46 TCGA-A7-A6VY-01 8 61779253 61779253 C G CHD7 3'UTR 0.28 TCGA-A7-A6VY-01 8 67772252 67772252 A C SGK3 3'UTR 0.30 TCGA-A7-A6VY-01 8 75276354 75276354 G A GDAP1 Missense_Mutation p.E277K 0.24 deleterious(0.01) possibly_damaging(0.857) TCGA-A7-A6VY-01 8 77775898 77775898 G T ZFHX4 Missense_Mutation p.L3316F 0.40 probably_damaging(0.994) TCGA-A7-A6VY-01 8 88218353 88218353 G A CNBD1 Silent p.L188L 0.19 TCGA-A7-A6VY-01 9 113734441 113734441 G C LPAR1 5'UTR 0.28 TCGA-A7-A6VY-01 9 115060187 115060187 C G PTBP3 Missense_Mutation p.D24H 0.24 deleterious(0) probably_damaging(0.967) TCGA-A7-A6VY-01 9 34257871 34257871 C G KIF24 Missense_Mutation p.L578F 0.24 tolerated(0.27) probably_damaging(0.979) TCGA-A7-A6VY-01 9 35689820 35689820 C T TPM2 5'UTR 0.23 TCGA-A7-A6VY-01 X 135046041 135046041 G A MMGT1 3'UTR 0.23 TCGA-A7-A6VY-01 X 151303251 151303251 A C MAGEA10 Missense_Mutation p.L281R 0.20 deleterious(0) probably_damaging(1) TCGA-A7-A6VY-01 X 73964130 73964130 C G KIAA2022 Missense_Mutation p.E88Q 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.859) TCGA-A8-A075-01 10 111985958 111985958 C T MXI1 Intron 0.38 TCGA-A8-A075-01 10 3181215 3181215 T A PITRM1 Missense_Mutation p.Q934L 0.61 deleterious(0.03) benign(0.158) TCGA-A8-A075-01 10 33502337 33502337 C T NRP1 Missense_Mutation p.D531N 0.28 deleterious(0.03) possibly_damaging(0.671) TCGA-A8-A075-01 10 33545247 33545247 C A NRP1 Nonsense_Mutation p.E271* 0.31 TCGA-A8-A075-01 10 95422824 95422824 A T PDE6C Missense_Mutation p.S803C 0.17 deleterious(0) possibly_damaging(0.617) TCGA-A8-A075-01 11 10014057 10014057 T G SBF2 Missense_Mutation p.N401H 0.34 deleterious(0.04) probably_damaging(0.942) TCGA-A8-A075-01 11 117263223 117263223 C G CEP164 Missense_Mutation p.S791R 0.35 deleterious(0) possibly_damaging(0.809) TCGA-A8-A075-01 11 120352172 120352172 G T ARHGEF12 Nonsense_Mutation p.G1481* 0.34 TCGA-A8-A075-01 11 46419132 46419132 G - AMBRA1 Frame_Shift_Del p.I1166Ffs*17 0.26 TCGA-A8-A075-01 11 61404918 61404918 A T RPLP0P2 RNA 0.13 TCGA-A8-A075-01 12 15095600 15095600 C A ARHGDIB Missense_Mutation p.E154D 0.21 tolerated(0.06) benign(0.005) TCGA-A8-A075-01 12 25254214 25254214 G T LRMP Missense_Mutation p.V282F 0.19 deleterious(0) probably_damaging(0.98) TCGA-A8-A075-01 12 41831643 41831643 G A PDZRN4 Intron 0.38 TCGA-A8-A075-01 12 52700002 52700002 C G KRT86 Silent p.S395S 0.23 TCGA-A8-A075-01 12 54917613 54917613 G A NCKAP1L Missense_Mutation p.D677N 0.20 deleterious(0) probably_damaging(0.978) TCGA-A8-A075-01 12 57500358 57500358 G A STAT6 Silent p.L162L 0.33 TCGA-A8-A075-01 12 58159202 58159202 C T CYP27B1 Missense_Mutation p.G156E 0.22 tolerated(1) benign(0.024) TCGA-A8-A075-01 12 59271267 59271267 G C LRIG3 Missense_Mutation p.C817W 0.33 deleterious(0) probably_damaging(1) TCGA-A8-A075-01 12 96728499 96728499 T C CDK17 Missense_Mutation p.N39S 0.18 tolerated_low_confidence(0.53) benign(0.001) TCGA-A8-A075-01 13 46701847 46701847 G A LCP1 Missense_Mutation p.S588F 0.33 deleterious(0) probably_damaging(0.999) TCGA-A8-A075-01 14 106237474 106237474 G C IGHG3 Missense_Mutation p.S90R 0.12 deleterious(0) probably_damaging(0.985) TCGA-A8-A075-01 15 44630015 44630015 C G CASC4 Missense_Mutation p.Q211E 0.38 tolerated(0.79) benign(0.016) TCGA-A8-A075-01 15 90258281 90258281 C T WDR93 Silent p.P237P 0.13 TCGA-A8-A075-01 16 18433315 18433315 C T NPIPA8 5'Flank 0.08 TCGA-A8-A075-01 16 19547513 19547533 TGATAGTTCCAATATTAGTCA - CCP110 In_Frame_Del p.D175_H181del 0.14 TCGA-A8-A075-01 16 24582488 24582488 T G RBBP6 Missense_Mutation p.S1367R 0.32 deleterious_low_confidence(0) unknown(0) TCGA-A8-A075-01 16 3432953 3432953 G A ZSCAN32 Missense_Mutation p.H453Y 0.31 deleterious(0.01) benign(0.106) TCGA-A8-A075-01 17 48270012 48270012 G T COL1A1 Missense_Mutation p.P640T 0.40 unknown(0) TCGA-A8-A075-01 17 71410870 71410870 G A SDK2 Silent p.H799H 0.17 TCGA-A8-A075-01 17 73490986 73490987 - A KIAA0195 Frame_Shift_Ins p.M869Nfs*18 0.47 TCGA-A8-A075-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.56 TCGA-A8-A075-01 18 22018002 22018002 C G IMPACT Missense_Mutation p.P122R 0.07 deleterious(0.03) benign(0.091) TCGA-A8-A075-01 19 11213440 11213440 C T LDLR Silent p.N97N 0.15 TCGA-A8-A075-01 19 13340904 13340904 G - CACNA1A Frame_Shift_Del p.A1841Qfs*15 0.31 TCGA-A8-A075-01 19 17015133 17015133 A G CPAMD8 Missense_Mutation p.L1432P 0.17 deleterious(0) probably_damaging(0.997) TCGA-A8-A075-01 19 39409429 39409429 C T SARS2 Missense_Mutation p.D264N 0.61 tolerated(0.09) probably_damaging(0.997) TCGA-A8-A075-01 19 6731903 6731903 C T GPR108 Silent p.K433K 0.23 TCGA-A8-A075-01 19 9057075 9057075 G C MUC16 Missense_Mutation p.S10124W 0.35 benign(0.396) TCGA-A8-A075-01 19 9064046 9064046 G A MUC16 Silent p.T7800T 0.26 TCGA-A8-A075-01 1 12921147 12921147 T C PRAMEF2 Missense_Mutation p.L313P 0.21 deleterious(0) probably_damaging(0.913) TCGA-A8-A075-01 1 160327968 160327968 C T NCSTN Silent p.I679I 0.16 TCGA-A8-A075-01 1 163043400 163043400 G C RGS4 Missense_Mutation p.Q219H 0.21 deleterious(0) possibly_damaging(0.908) TCGA-A8-A075-01 1 190068153 190068153 C T BRINP3 Silent p.Q432Q 0.12 TCGA-A8-A075-01 1 203702418 203702418 G T ATP2B4 Intron 0.12 TCGA-A8-A075-01 1 224415307 224415307 C G NVL 3'UTR 0.08 TCGA-A8-A075-01 1 33956633 33956633 G T ZSCAN20 Missense_Mutation p.V259F 0.24 tolerated(0.12) benign(0.426) TCGA-A8-A075-01 1 39797635 39797654 ATAATCTGATTGACCAAGAT - MACF1 Intron 0.12 TCGA-A8-A075-01 1 40947462 40947462 T A ZFP69 Missense_Mutation p.V52E 0.45 tolerated(0.07) benign(0) TCGA-A8-A075-01 1 43828872 43828872 A - CDC20 3'UTR 0.10 TCGA-A8-A075-01 1 9322166 9322166 A C H6PD Missense_Mutation p.Q265P 0.67 deleterious(0) probably_damaging(1) TCGA-A8-A075-01 20 33711728 33711728 G T EDEM2 Missense_Mutation p.T360K 0.18 deleterious(0.03) benign(0.315) TCGA-A8-A075-01 20 47839853 47839853 G T DDX27 Nonsense_Mutation p.E148* 0.35 TCGA-A8-A075-01 22 32631034 32631034 C T SLC5A4 Silent p.V237V 0.51 TCGA-A8-A075-01 2 128386057 128386057 G T MYO7B Missense_Mutation p.G1498V 0.20 deleterious(0) probably_damaging(1) TCGA-A8-A075-01 2 162711484 162711484 T G SLC4A10 Missense_Mutation p.L141V 0.05 tolerated(0.42) benign(0.229) TCGA-A8-A075-01 2 189898939 189898939 G A COL5A2 Missense_Mutation p.R1453W 0.18 unknown(0) TCGA-A8-A075-01 2 198274677 198274677 C A SF3B1 Nonsense_Mutation p.G241* 0.11 TCGA-A8-A075-01 2 201434702 201434702 T G SGOL2 Intron 0.26 TCGA-A8-A075-01 2 207656516 207656516 G C FASTKD2 Missense_Mutation p.S708T 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-A8-A075-01 2 39171098 39171098 A C ARHGEF33 Missense_Mutation p.N283H 0.03 tolerated(0.35) benign(0.401) TCGA-A8-A075-01 2 44115732 44115732 G A LRPPRC 3'UTR 0.13 TCGA-A8-A075-01 2 69642366 69642366 A G NFU1 Silent p.F145F 0.15 TCGA-A8-A075-01 2 70165429 70165429 T G MXD1 3'UTR 0.16 TCGA-A8-A075-01 2 74902498 74902498 C G SEMA4F Silent p.L453L 0.28 TCGA-A8-A075-01 2 97866080 97866080 G A ANKRD36 Missense_Mutation p.R922Q 0.18 tolerated_low_confidence(1) benign(0.238) TCGA-A8-A075-01 3 140785393 140785393 C G SPSB4 Silent p.L149L 0.21 TCGA-A8-A075-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.34 tolerated(0.06) possibly_damaging(0.801) TCGA-A8-A075-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.34 deleterious(0.02) probably_damaging(0.959) TCGA-A8-A075-01 3 44776563 44776572 TTTATAAGTG - ZNF501 Frame_Shift_Del p.Y218Vfs*74 0.21 TCGA-A8-A075-01 4 122853549 122853549 G A TRPC3 Silent p.I288I 0.72 TCGA-A8-A075-01 4 6865167 6865167 G T KIAA0232 Missense_Mutation p.D1020Y 0.27 deleterious(0) possibly_damaging(0.902) TCGA-A8-A075-01 4 74124127 74124127 C T ANKRD17 Missense_Mutation p.E87K 0.45 benign(0.305) TCGA-A8-A075-01 5 35709282 35709294 AATTATAAATTAT - SPEF2 Intron 0.41 TCGA-A8-A075-01 6 10926595 10926595 C T SYCP2L Silent p.I414I 0.19 TCGA-A8-A075-01 6 114378677 114378677 G A HS3ST5 Missense_Mutation p.P262L 0.31 deleterious(0) probably_damaging(1) TCGA-A8-A075-01 6 151671439 151671439 T A AKAP12 Missense_Mutation p.V638D 0.07 deleterious(0) possibly_damaging(0.823) TCGA-A8-A075-01 6 168226763 168226763 C T MLLT4 5'Flank 0.46 TCGA-A8-A075-01 6 36564541 36564541 T A SRSF3 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-A8-A075-01 6 36564556 36564556 G T SRSF3 Missense_Mutation p.C6F 0.37 deleterious(0.05) benign(0.013) TCGA-A8-A075-01 6 45513000 45513000 C T RUNX2 Silent p.L356L 0.35 TCGA-A8-A075-01 6 56044900 56044900 A G COL21A1 Missense_Mutation p.V39A 0.09 deleterious(0.05) probably_damaging(0.998) TCGA-A8-A075-01 6 57244754 57244754 G A PRIM2 Missense_Mutation p.S172N 0.13 tolerated(0.53) benign(0.003) TCGA-A8-A075-01 6 6145840 6145843 CTTC - F13A1 3'UTR 0.15 TCGA-A8-A075-01 6 62390919 62390919 C T KHDRBS2 Silent p.P333P 0.34 TCGA-A8-A075-01 6 84574045 84574045 G C CYB5R4 Missense_Mutation p.R76T 0.31 deleterious(0.02) probably_damaging(0.977) TCGA-A8-A075-01 6 86201757 86201757 C G NT5E Missense_Mutation p.L475V 0.27 tolerated(0.14) benign(0.085) TCGA-A8-A075-01 7 36763911 36763911 A C AOAH 5'UTR 0.31 TCGA-A8-A075-01 7 44612006 44612006 G A DDX56 Silent p.L195L 0.34 TCGA-A8-A075-01 7 48315435 48315435 C G ABCA13 Missense_Mutation p.L2058V 0.21 benign(0.231) TCGA-A8-A075-01 7 82582602 82582602 G A PCLO Missense_Mutation p.S2556F 0.47 unknown(0) TCGA-A8-A075-01 8 103231041 103231041 C A RRM2B Splice_Site p.X228_splice 0.05 TCGA-A8-A075-01 8 109796543 109796543 C T TMEM74 Missense_Mutation p.R262Q 0.13 deleterious(0.04) benign(0.066) TCGA-A8-A075-01 8 145559756 145559756 G A SCRT1 Missense_Mutation p.R26C 0.09 deleterious(0.04) probably_damaging(0.982) TCGA-A8-A075-01 8 145678614 145678614 C T CYHR1 Missense_Mutation p.C159Y 0.43 deleterious(0) probably_damaging(0.976) TCGA-A8-A075-01 8 54866817 54866817 G C RGS20 Missense_Mutation p.E309Q 0.13 deleterious(0.02) probably_damaging(0.961) TCGA-A8-A075-01 8 64099880 64099880 C G YTHDF3 Missense_Mutation p.I436M 0.13 deleterious(0) possibly_damaging(0.506) TCGA-A8-A075-01 8 74893669 74893669 A G TMEM70 Missense_Mutation p.D199G 0.10 deleterious(0) probably_damaging(0.997) TCGA-A8-A075-01 9 106887243 106887243 G A SMC2 Missense_Mutation p.E770K 0.41 tolerated(0.36) benign(0.036) TCGA-A8-A075-01 9 18906875 18906875 A C ADAMTSL1 Missense_Mutation p.N1716T 0.15 tolerated(1) benign(0.113) TCGA-A8-A075-01 9 35101259 35101259 C T STOML2 Silent p.R199R 0.25 TCGA-A8-A075-01 9 35562545 35562545 G A FAM166B Missense_Mutation p.R191C 0.32 deleterious(0.03) benign(0.365) TCGA-A8-A075-01 9 36344831 36344831 A G RNF38 Silent p.T461T 0.24 TCGA-A8-A075-01 9 90252867 90252867 T A DAPK1 Silent p.G98G 0.25 TCGA-A8-A075-01 9 91660705 91660705 C T SHC3 Missense_Mutation p.G386E 0.29 tolerated(0.11) benign(0.037) TCGA-A8-A075-01 X 108926725 108926725 G T ACSL4 5'UTR 0.33 TCGA-A8-A075-01 X 135593951 135593951 G A HTATSF1 Missense_Mutation p.D683N 0.10 deleterious_low_confidence(0) unknown(0) TCGA-A8-A075-01 X 135594126 135594126 G A HTATSF1 Missense_Mutation p.G741D 0.11 tolerated_low_confidence(0.15) unknown(0) TCGA-A8-A075-01 X 135594158 135594158 G A HTATSF1 Missense_Mutation p.D752N 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-A8-A075-01 X 76949382 76949382 C - ATRX Frame_Shift_Del p.D139Mfs*14 0.17 TCGA-A8-A075-01 X 9863794 9863794 G A SHROOM2 Missense_Mutation p.V616M 0.26 tolerated(0.17) benign(0.239) TCGA-AC-A23C-01 10 101715245 101715245 G C DNMBP Silent p.L662L 0.12 TCGA-AC-A23C-01 10 112362317 112362317 G A SMC3 Missense_Mutation p.G1064D 0.17 tolerated(0.84) benign(0.03) TCGA-AC-A23C-01 10 113920522 113920522 T G GPAM Silent p.V533V 0.36 TCGA-AC-A23C-01 10 11505403 11505403 A C USP6NL Silent p.G525G 0.15 TCGA-AC-A23C-01 10 30915760 30915760 T C LYZL2 Missense_Mutation p.K75E 0.14 deleterious(0.01) possibly_damaging(0.57) TCGA-AC-A23C-01 10 35327865 35327865 C T CUL2 Missense_Mutation p.R306Q 0.06 tolerated(0.39) benign(0.002) TCGA-AC-A23C-01 10 89711928 89711929 AA - PTEN Frame_Shift_Del p.K183Efs*6 0.47 TCGA-AC-A23C-01 11 101777841 101777841 G A ANGPTL5 Silent p.F78F 0.25 TCGA-AC-A23C-01 11 1096456 1096456 G C MUC2 Missense_Mutation p.D2161H 0.23 unknown(0) TCGA-AC-A23C-01 11 11957978 11957978 C T USP47 Silent p.G598G 0.18 TCGA-AC-A23C-01 11 128426192 128426192 C A ETS1 Missense_Mutation p.V70F 0.33 tolerated(0.52) benign(0) TCGA-AC-A23C-01 11 17517116 17517116 C T USH1C Silent p.T885T 0.19 TCGA-AC-A23C-01 11 61026260 61026260 G A VWCE Missense_Mutation p.R919C 0.32 deleterious_low_confidence(0.01) benign(0.425) TCGA-AC-A23C-01 11 61674931 61674931 C G RAB3IL1 Missense_Mutation p.K124N 0.11 tolerated(0.2) probably_damaging(0.93) TCGA-AC-A23C-01 11 71942144 71942144 G C INPPL1 Missense_Mutation p.G470R 0.36 deleterious(0) probably_damaging(1) TCGA-AC-A23C-01 12 13208573 13208573 G A KIAA1467 Silent p.Q42Q 0.27 TCGA-AC-A23C-01 12 132475210 132475212 AGA - EP400 In_Frame_Del p.E862del 0.41 TCGA-AC-A23C-01 12 15636960 15636960 C T PTPRO Missense_Mutation p.S43L 0.21 deleterious_low_confidence(0) benign(0.293) TCGA-AC-A23C-01 12 55820676 55820676 C G OR6C76 Silent p.L213L 0.20 TCGA-AC-A23C-01 12 56222324 56222325 CT - DNAJC14 Frame_Shift_Del p.R40Gfs*8 0.15 TCGA-AC-A23C-01 12 95604719 95604719 G C FGD6 Missense_Mutation p.S114C 0.08 tolerated_low_confidence(0.13) possibly_damaging(0.873) TCGA-AC-A23C-01 13 111953138 111953138 A T ARHGEF7 Missense_Mutation p.E569D 0.09 tolerated(0.2) benign(0.32) TCGA-AC-A23C-01 13 20006632 20006632 G A TPTE2 Silent p.F401F 0.12 TCGA-AC-A23C-01 13 20398780 20398780 G A ZMYM5 Missense_Mutation p.S616L 0.19 deleterious(0) probably_damaging(0.994) TCGA-AC-A23C-01 13 25161445 25161445 C T RP11-556N21.1 RNA 0.04 TCGA-AC-A23C-01 13 45515264 45515264 G A NUFIP1 3'UTR 0.33 TCGA-AC-A23C-01 13 75900540 75900540 G A TBC1D4 Missense_Mutation p.S609F 0.18 deleterious(0.01) possibly_damaging(0.895) TCGA-AC-A23C-01 14 105416842 105416842 T A AHNAK2 Missense_Mutation p.K1649M 0.18 benign(0.316) TCGA-AC-A23C-01 14 61180171 61180171 G A SIX4 Missense_Mutation p.A767V 0.21 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AC-A23C-01 14 92909751 92909751 G A SLC24A4 Missense_Mutation p.R197H 0.30 tolerated(0.55) benign(0.003) TCGA-AC-A23C-01 15 31233955 31233955 G C MTMR10 Silent p.L684L 0.17 TCGA-AC-A23C-01 15 41100005 41100005 G C ZFYVE19 Missense_Mutation p.G73A 0.28 tolerated_low_confidence(0.45) benign(0.01) TCGA-AC-A23C-01 15 84657563 84657563 G A ADAMTSL3 Silent p.L1279L 0.16 TCGA-AC-A23C-01 15 85382269 85382269 T C ALPK3 Silent p.C323C 0.25 TCGA-AC-A23C-01 16 15961319 15961319 A C FOPNL Missense_Mutation p.V168G 0.33 deleterious_low_confidence(0) benign(0.05) TCGA-AC-A23C-01 16 27246549 27246549 C T NSMCE1 Missense_Mutation p.E70K 0.08 tolerated(0.1) benign(0.029) TCGA-AC-A23C-01 16 31392219 31392219 C T ITGAX Missense_Mutation p.T1093M 0.19 tolerated(0.51) benign(0.051) TCGA-AC-A23C-01 16 48595832 48595832 C T N4BP1 Missense_Mutation p.G241E 0.16 deleterious(0) possibly_damaging(0.78) TCGA-AC-A23C-01 16 74501683 74501684 AG - GLG1 Frame_Shift_Del p.F833Lfs*32 0.34 TCGA-AC-A23C-01 17 15965432 15965432 G A NCOR1 Nonsense_Mutation p.Q1792* 0.39 TCGA-AC-A23C-01 17 27778590 27778590 C T TAOK1 Silent p.G8G 0.18 TCGA-AC-A23C-01 17 29553598 29553598 A T NF1 Missense_Mutation p.E716V 0.24 deleterious(0) benign(0.15) TCGA-AC-A23C-01 17 33679925 33679925 G C SLFN11 Nonsense_Mutation p.S719* 0.24 TCGA-AC-A23C-01 17 38032947 38032947 C T ZPBP2 Missense_Mutation p.P301L 0.75 deleterious(0) probably_damaging(1) TCGA-AC-A23C-01 17 38033019 38033019 C G ZPBP2 Missense_Mutation p.S325C 0.72 deleterious(0.01) probably_damaging(0.935) TCGA-AC-A23C-01 17 58030257 58030257 G A RNFT1 3'UTR 0.31 TCGA-AC-A23C-01 17 58740529 58740529 C A PPM1D Nonsense_Mutation p.C478* 0.19 TCGA-AC-A23C-01 17 7578408 7578408 C - TP53 Frame_Shift_Del p.R174Sfs*73 0.33 TCGA-AC-A23C-01 18 23658072 23658072 A T SS18 Missense_Mutation p.S67T 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-AC-A23C-01 18 44660972 44660972 C G HDHD2 Missense_Mutation p.E69Q 0.12 tolerated(0.4) benign(0.005) TCGA-AC-A23C-01 18 47788443 47788443 G T CCDC11 Nonsense_Mutation p.C72* 0.08 TCGA-AC-A23C-01 19 19035447 19035447 G A DDX49 Missense_Mutation p.A290T 0.25 deleterious(0.03) possibly_damaging(0.473) TCGA-AC-A23C-01 19 22586308 22586308 A G ZNF98 Silent p.L13L 0.06 TCGA-AC-A23C-01 19 38610027 38610027 C A SIPA1L3 Silent p.V791V 0.16 TCGA-AC-A23C-01 19 46893337 46893337 T C PPP5C Missense_Mutation p.I462T 0.33 deleterious(0) probably_damaging(0.984) TCGA-AC-A23C-01 19 58724135 58724135 A G ZNF274 Missense_Mutation p.T529A 0.45 deleterious(0.01) possibly_damaging(0.705) TCGA-AC-A23C-01 19 58774007 58774007 C T ZNF544 Missense_Mutation p.H679Y 0.41 tolerated(0.07) benign(0) TCGA-AC-A23C-01 1 104076478 104076478 A T RNPC3 Missense_Mutation p.R120W 0.21 deleterious(0.02) possibly_damaging(0.639) TCGA-AC-A23C-01 1 144882779 144882779 G A PDE4DIP Silent p.G1080G 0.09 TCGA-AC-A23C-01 1 158325123 158325123 G C CD1E Missense_Mutation p.R130T 0.11 tolerated(0.14) benign(0.068) TCGA-AC-A23C-01 1 158325125 158325125 A T CD1E Missense_Mutation p.M131L 0.12 tolerated(1) benign(0) TCGA-AC-A23C-01 1 159043162 159043162 G A AIM2 Missense_Mutation p.A43V 0.14 tolerated(0.32) possibly_damaging(0.836) TCGA-AC-A23C-01 1 160124840 160124840 T C ATP1A4 Silent p.H71H 0.16 TCGA-AC-A23C-01 1 169336954 169336954 C G NME7 5'UTR 0.08 TCGA-AC-A23C-01 1 196394988 196394988 C T KCNT2 Missense_Mutation p.R372K 0.41 deleterious(0) possibly_damaging(0.84) TCGA-AC-A23C-01 1 200529955 200529955 G A KIF14 Silent p.I1375I 0.09 TCGA-AC-A23C-01 1 203316445 203316445 G C FMOD Silent p.L318L 0.08 TCGA-AC-A23C-01 1 214816025 214816025 C A CENPF Silent p.V1448V 0.12 TCGA-AC-A23C-01 1 22404937 22404937 G A CDC42 5'UTR 0.17 TCGA-AC-A23C-01 1 2327287 2327287 A G RER1 Missense_Mutation p.R20G 0.06 deleterious(0.04) benign(0.155) TCGA-AC-A23C-01 1 236766623 236766623 C G HEATR1 Missense_Mutation p.E66Q 0.13 tolerated(0.6) benign(0.061) TCGA-AC-A23C-01 1 240370175 240370175 C A FMN2 Missense_Mutation p.T688N 0.12 unknown(0) TCGA-AC-A23C-01 1 28086155 28086155 A C FAM76A Intron 0.14 TCGA-AC-A23C-01 1 40713810 40713810 C G TMCO2 Missense_Mutation p.P49A 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-AC-A23C-01 1 54428012 54428012 T C LRRC42 Missense_Mutation p.L286P 0.13 deleterious(0) probably_damaging(0.999) TCGA-AC-A23C-01 1 78205076 78205076 G T USP33 Missense_Mutation p.N106K 0.16 deleterious(0) probably_damaging(1) TCGA-AC-A23C-01 20 30585069 30585069 C T XKR7 Missense_Mutation p.R517W 0.33 deleterious(0) probably_damaging(0.997) TCGA-AC-A23C-01 20 40049605 40049605 T G CHD6 Silent p.V1890V 0.11 TCGA-AC-A23C-01 20 48479578 48479578 A T SLC9A8 Missense_Mutation p.T292S 0.11 deleterious(0.02) benign(0.016) TCGA-AC-A23C-01 22 37492106 37492106 G A TMPRSS6 Silent p.F152F 0.25 TCGA-AC-A23C-01 2 101607275 101607275 G A NPAS2 Missense_Mutation p.M684I 0.14 deleterious(0.02) benign(0.164) TCGA-AC-A23C-01 2 101638182 101638182 C G TBC1D8 Missense_Mutation p.E915Q 0.19 tolerated(0.07) possibly_damaging(0.53) TCGA-AC-A23C-01 2 166019304 166019304 C T SCN3A Silent p.S243S 0.06 TCGA-AC-A23C-01 2 18112363 18112363 C G KCNS3 Missense_Mutation p.Q30E 0.23 tolerated(0.31) benign(0.324) TCGA-AC-A23C-01 2 203684433 203684433 C G ICA1L Missense_Mutation p.K183N 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A23C-01 2 210561344 210561344 C T MAP2 Missense_Mutation p.S1420L 0.16 deleterious(0) benign(0.043) TCGA-AC-A23C-01 2 219211306 219211306 C G PNKD 3'UTR 0.13 TCGA-AC-A23C-01 2 219527298 219527298 C T BCS1L Missense_Mutation p.S262F 0.35 deleterious(0) probably_damaging(0.972) TCGA-AC-A23C-01 2 234622145 234622145 G A UGT1A5 Missense_Mutation p.V170M 0.10 deleterious(0.02) probably_damaging(1) TCGA-AC-A23C-01 2 23977081 23977081 G A ATAD2B Missense_Mutation p.R1435C 0.08 deleterious(0) probably_damaging(0.996) TCGA-AC-A23C-01 2 27359956 27359956 G T C2orf53 3'UTR 0.27 TCGA-AC-A23C-01 2 27447691 27447691 G T CAD Missense_Mutation p.G445W 0.16 deleterious(0) probably_damaging(0.999) TCGA-AC-A23C-01 2 97864218 97864218 C T ANKRD36 Missense_Mutation p.P891L 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-AC-A23C-01 3 121410623 121410623 C G GOLGB1 Missense_Mutation p.E2530Q 0.08 possibly_damaging(0.747) TCGA-AC-A23C-01 3 130318623 130318623 C A COL6A6 Missense_Mutation p.P1541H 0.18 tolerated(0.13) benign(0.415) TCGA-AC-A23C-01 3 169550895 169550895 A G LRRIQ4 Missense_Mutation p.E485G 0.27 deleterious(0.03) possibly_damaging(0.642) TCGA-AC-A23C-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-AC-A23C-01 3 182683349 182683349 C A DCUN1D1 Nonsense_Mutation p.E66* 0.17 TCGA-AC-A23C-01 3 38565890 38565890 A T EXOG 3'UTR 0.24 TCGA-AC-A23C-01 3 44409100 44409100 G A TCAIM Missense_Mutation p.D158N 0.20 tolerated(0.55) benign(0.046) TCGA-AC-A23C-01 3 85984959 85984959 A C CADM2 Missense_Mutation p.Q241P 0.25 deleterious(0.01) benign(0.305) TCGA-AC-A23C-01 4 152487362 152487362 A T FAM160A1 5'UTR 0.18 TCGA-AC-A23C-01 4 164247139 164247139 C T NPY1R Missense_Mutation p.D190N 0.24 tolerated(0.27) benign(0.039) TCGA-AC-A23C-01 4 1742588 1742588 G T TACC3 Nonsense_Mutation p.E700* 0.24 TCGA-AC-A23C-01 4 54343119 54343119 C T LNX1 Missense_Mutation p.E565K 0.20 deleterious(0) possibly_damaging(0.61) TCGA-AC-A23C-01 4 83350456 83350456 C A HNRNPDL Nonsense_Mutation p.E130* 0.20 TCGA-AC-A23C-01 4 961414 961414 C G DGKQ Missense_Mutation p.D304H 0.24 deleterious(0) probably_damaging(1) TCGA-AC-A23C-01 5 138729941 138729941 G A PROB1 Missense_Mutation p.S277L 0.19 tolerated_low_confidence(0.21) benign(0.003) TCGA-AC-A23C-01 5 14358362 14358362 G C TRIO Missense_Mutation p.D708H 0.35 probably_damaging(0.924) TCGA-AC-A23C-01 5 169141180 169141180 C T DOCK2 Missense_Mutation p.S603F 0.32 deleterious(0) benign(0.197) TCGA-AC-A23C-01 5 38942481 38942481 C T RICTOR Splice_Site p.X1685_splice 0.06 TCGA-AC-A23C-01 5 41057220 41057220 G A MROH2B Missense_Mutation p.L304F 0.09 deleterious(0.05) probably_damaging(0.915) TCGA-AC-A23C-01 5 427993 427993 C T AHRR Silent p.L282L 0.27 TCGA-AC-A23C-01 5 64905155 64905155 C A TRIM23 Missense_Mutation p.W320L 0.18 tolerated(0.68) benign(0.053) TCGA-AC-A23C-01 5 94852114 94852114 C A TTC37 Splice_Site p.X860_splice 0.26 TCGA-AC-A23C-01 6 114262224 114262224 A T HDAC2 Nonstop_Mutation p.*489Rext*2 0.07 TCGA-AC-A23C-01 6 165756912 165756912 C T PDE10A Missense_Mutation p.A689T 0.20 deleterious(0.05) benign(0.014) TCGA-AC-A23C-01 6 167796310 167796310 C T TCP10 Missense_Mutation p.G18R 0.13 tolerated(0.77) benign(0.006) TCGA-AC-A23C-01 6 26368226 26368226 C T BTN3A2 5'UTR 0.09 TCGA-AC-A23C-01 6 27806523 27806523 G A HIST1H2BN Silent p.K28K 0.14 TCGA-AC-A23C-01 6 34803151 34803151 C T UHRF1BP1 Silent p.L250L 0.13 TCGA-AC-A23C-01 6 39851798 39851798 G A DAAM2 Missense_Mutation p.D636N 0.09 tolerated(0.06) probably_damaging(0.998) TCGA-AC-A23C-01 6 84881431 84881431 C T KIAA1009 Missense_Mutation p.E725K 0.13 deleterious(0) probably_damaging(0.949) TCGA-AC-A23C-01 6 91266329 91266329 G A MAP3K7 Missense_Mutation p.A166V 0.08 tolerated(0.15) possibly_damaging(0.578) TCGA-AC-A23C-01 7 111398727 111398727 C T DOCK4 Missense_Mutation p.D1419N 0.18 deleterious(0) probably_damaging(0.919) TCGA-AC-A23C-01 7 148767947 148767947 G T ZNF786 Missense_Mutation p.H639Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-AC-A23C-01 7 150749825 150749825 A G ASIC3 3'UTR 0.12 TCGA-AC-A23C-01 7 23000941 23000941 A G FAM126A Silent p.F248F 0.16 TCGA-AC-A23C-01 7 34977615 34977615 C T DPY19L1 Missense_Mutation p.R621K 0.10 tolerated(0.32) benign(0.081) TCGA-AC-A23C-01 7 6029571 6029571 T C PMS2 Missense_Mutation p.N335S 0.14 deleterious(0) probably_damaging(0.942) TCGA-AC-A23C-01 7 90355956 90355956 G A CDK14 Missense_Mutation p.E49K 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.533) TCGA-AC-A23C-01 8 110588046 110588046 C T SYBU Missense_Mutation p.D361N 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A23C-01 8 125029949 125029949 G C FER1L6 Missense_Mutation p.W668C 0.28 tolerated(0.18) benign(0.353) TCGA-AC-A23C-01 8 42024777 42024813 CGATGGGGAAGACCATTGAGGGAGTGACTGTCACCAG - AP3M2 Frame_Shift_Del p.M301Rfs*7 0.23 TCGA-AC-A23C-01 9 103348369 103348369 C T MURC Missense_Mutation p.S244L 0.10 deleterious(0) possibly_damaging(0.88) TCGA-AC-A23C-01 9 109746549 109746552 TACC - ZNF462 Frame_Shift_Del p.T2306Sfs*13 0.35 TCGA-AC-A23C-01 9 112930764 112930764 A G PALM2-AKAP2 Missense_Mutation p.E1100G 0.26 deleterious(0.01) possibly_damaging(0.818) TCGA-AC-A23C-01 9 115760106 115760106 C G ZNF883 RNA 0.11 TCGA-AC-A23C-01 9 35713277 35713277 C T TLN1 Missense_Mutation p.D1090N 0.25 tolerated(0.05) probably_damaging(0.98) TCGA-AC-A23C-01 X 12735849 12735849 G A FRMPD4 Silent p.S968S 0.23 TCGA-AC-A23C-01 X 138642990 138642990 G T F9 Missense_Mutation p.G272C 0.06 deleterious(0) probably_damaging(0.966) TCGA-AC-A23C-01 X 147007128 147007128 A C FMR1 Missense_Mutation p.I59L 0.29 tolerated(0.17) benign(0.009) TCGA-AC-A23C-01 X 16863950 16863950 C A RBBP7 Splice_Site p.X447_splice 0.26 TCGA-AC-A23C-01 X 23019366 23019366 C T DDX53 Missense_Mutation p.R398C 0.25 deleterious(0.02) benign(0.298) TCGA-AC-A23C-01 X 30873374 30873374 G A TAB3 Silent p.N136N 0.25 TCGA-AC-A23C-01 X 34149096 34149096 A G FAM47A Missense_Mutation p.S434P 0.24 tolerated(1) benign(0.014) TCGA-AC-A23C-01 X 49062188 49062188 T C CACNA1F Missense_Mutation p.Y1864C 0.16 tolerated(0.15) benign(0.099) TCGA-AC-A23C-01 X 55513916 55513916 T C USP51 Missense_Mutation p.Q486R 0.24 tolerated(0.33) benign(0.091) TCGA-AC-A23C-01 X 65824309 65824309 T C EDA2R Silent p.Q102Q 0.27 TCGA-AC-A23C-01 X 70351944 70351944 A T MED12 Missense_Mutation p.N1381Y 0.12 possibly_damaging(0.594) TCGA-AC-A23C-01 X 79279656 79279656 C T TBX22 Missense_Mutation p.R151C 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A23C-01 X 84601036 84601036 G C POF1B Missense_Mutation p.Q185E 0.15 tolerated_low_confidence(0.09) benign(0.167) TCGA-AC-A23E-01 10 7409820 7409820 G C SFMBT2 Missense_Mutation p.P76R 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-AC-A23E-01 11 36297762 36297762 G A COMMD9 Silent p.D127D 0.20 TCGA-AC-A23E-01 11 63585595 63585595 C T C11orf84 Missense_Mutation p.P149L 0.20 tolerated(0.11) benign(0.006) TCGA-AC-A23E-01 11 73759252 73759252 C A C2CD3 Silent p.G1831G 0.27 TCGA-AC-A23E-01 12 55794527 55794527 C T OR6C65 Missense_Mutation p.T72M 0.19 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-AC-A23E-01 13 107822844 107822844 G A FAM155A 3'UTR 0.17 TCGA-AC-A23E-01 14 100793566 100793566 G A SLC25A47 Silent p.T62T 0.41 TCGA-AC-A23E-01 15 41099712 41099712 C G ZFYVE19 5'UTR 0.15 TCGA-AC-A23E-01 17 11984671 11984672 AG - MAP2K4 Splice_Site p.X75_splice 0.54 TCGA-AC-A23E-01 17 16012112 16012112 C A NCOR1 Nonsense_Mutation p.E724* 0.55 TCGA-AC-A23E-01 17 34182281 34182281 G A C17orf66 Missense_Mutation p.P500L 0.16 deleterious(0) possibly_damaging(0.813) TCGA-AC-A23E-01 17 48453257 48453257 G C EME1 Missense_Mutation p.E230Q 0.21 deleterious(0.02) benign(0.331) TCGA-AC-A23E-01 17 73897305 73897305 C T MRPL38 Nonsense_Mutation p.W214* 0.21 TCGA-AC-A23E-01 19 9577375 9577375 G A ZNF560 Missense_Mutation p.R750C 0.18 deleterious(0.04) benign(0) TCGA-AC-A23E-01 1 26581958 26581958 G C CEP85 Missense_Mutation p.G169R 0.19 tolerated(0.41) probably_damaging(0.937) TCGA-AC-A23E-01 20 49507818 49507818 G C ADNP 3'UTR 0.38 TCGA-AC-A23E-01 2 219611894 219611894 C T TTLL4 Missense_Mutation p.R715C 0.06 deleterious(0.04) benign(0.035) TCGA-AC-A23E-01 3 100058685 100058685 G A NIT2 Silent p.A51A 0.22 TCGA-AC-A23E-01 3 127398956 127398956 C T ABTB1 Silent p.R386R 0.45 TCGA-AC-A23E-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.40 tolerated(0.11) possibly_damaging(0.529) TCGA-AC-A23E-01 5 135489806 135489807 AG - SMAD5 Frame_Shift_Del p.E120Sfs*9 0.17 TCGA-AC-A23E-01 6 159653120 159653120 C T FNDC1 Missense_Mutation p.R526C 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-AC-A23E-01 9 116060076 116060076 G A RNF183 Missense_Mutation p.P130L 0.16 tolerated(0.3) benign(0.002) TCGA-AC-A23E-01 9 117848514 117848514 C T TNC Missense_Mutation p.R499H 0.14 deleterious(0.05) benign(0.002) TCGA-AC-A23E-01 X 128963024 128963024 G A ZDHHC9 Silent p.S87S 0.13 TCGA-AC-A23E-01 X 31089761 31089761 C A FTHL17 Missense_Mutation p.A104S 0.44 deleterious(0.03) probably_damaging(0.954) TCGA-AC-A23H-01 10 100154999 100154999 C T PYROXD2 Missense_Mutation p.D247N 0.29 deleterious(0.01) possibly_damaging(0.598) TCGA-AC-A23H-01 10 101090509 101090509 G A CNNM1 Silent p.E455E 0.35 TCGA-AC-A23H-01 10 101458334 101458334 C G ENTPD7 Missense_Mutation p.L352V 0.34 tolerated(0.1) benign(0.403) TCGA-AC-A23H-01 10 101659737 101659737 C T DNMBP Missense_Mutation p.E881K 0.55 deleterious(0.03) probably_damaging(0.98) TCGA-AC-A23H-01 10 102738999 102738999 C G MRPL43 3'Flank 0.23 TCGA-AC-A23H-01 10 102749553 102749553 G A C10orf2 Missense_Mutation p.D466N 0.34 tolerated(0.06) benign(0.045) TCGA-AC-A23H-01 10 103789437 103789437 G C C10orf76 Missense_Mutation p.I124M 0.26 deleterious(0.01) benign(0.089) TCGA-AC-A23H-01 10 103906590 103906590 G T PPRC1 Nonsense_Mutation p.E1281* 0.37 TCGA-AC-A23H-01 10 104211235 104211235 C T C10orf95 5'UTR 0.36 TCGA-AC-A23H-01 10 104211243 104211243 C A C10orf95 5'UTR 0.40 TCGA-AC-A23H-01 10 104404572 104404572 G A TRIM8 Silent p.E66E 0.38 TCGA-AC-A23H-01 10 104592375 104592375 G A CYP17A1 Silent p.I344I 0.35 TCGA-AC-A23H-01 10 104636765 104636765 G T AS3MT Nonsense_Mutation p.E195* 0.33 TCGA-AC-A23H-01 10 104687306 104687306 C G CNNM2 Intron 0.42 TCGA-AC-A23H-01 10 105765667 105765667 C T SLK Intron 0.19 TCGA-AC-A23H-01 10 105885303 105885303 G C SFR1 Missense_Mutation p.K193N 0.37 tolerated(0.31) possibly_damaging(0.724) TCGA-AC-A23H-01 10 105893473 105893473 C A WDR96 Nonsense_Mutation p.E1501* 0.32 TCGA-AC-A23H-01 10 105893500 105893500 C A WDR96 Missense_Mutation p.D1492Y 0.34 deleterious(0) probably_damaging(0.985) TCGA-AC-A23H-01 10 106074281 106074281 C T ITPRIP Missense_Mutation p.R510Q 0.44 deleterious(0.01) benign(0.06) TCGA-AC-A23H-01 10 106207522 106207522 G A CCDC147 Missense_Mutation p.E775K 0.27 deleterious(0.03) possibly_damaging(0.749) TCGA-AC-A23H-01 10 1065716 1065716 C T IDI2 Missense_Mutation p.R142K 0.24 deleterious(0.02) benign(0.006) TCGA-AC-A23H-01 10 108923816 108923816 C A SORCS1 Nonsense_Mutation p.E157* 0.19 TCGA-AC-A23H-01 10 111886191 111886191 G A ADD3 Missense_Mutation p.R513Q 0.37 tolerated(0.09) probably_damaging(0.999) TCGA-AC-A23H-01 10 111886201 111886201 G C ADD3 Missense_Mutation p.L516F 0.31 tolerated(0.14) possibly_damaging(0.564) TCGA-AC-A23H-01 10 112655727 112655727 G - PDCD4 Frame_Shift_Del p.E411Kfs*20 0.28 TCGA-AC-A23H-01 10 112769570 112769570 C T SHOC2 Missense_Mutation p.H508Y 0.35 tolerated(1) benign(0.233) TCGA-AC-A23H-01 10 11363273 11363273 C G CELF2 Nonsense_Mutation p.Y406* 0.10 TCGA-AC-A23H-01 10 114045948 114045948 G A TECTB Silent p.V129V 0.33 TCGA-AC-A23H-01 10 114169397 114169397 G C ACSL5 Missense_Mutation p.R278T 0.22 tolerated(0.05) benign(0.233) TCGA-AC-A23H-01 10 114724346 114724346 C T TCF7L2 Missense_Mutation p.S138F 0.17 deleterious(0) benign(0.144) TCGA-AC-A23H-01 10 11505281 11505281 G A USP6NL Missense_Mutation p.S566L 0.13 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 10 11527872 11527872 G C USP6NL Missense_Mutation p.Q252E 0.21 deleterious(0.03) possibly_damaging(0.655) TCGA-AC-A23H-01 10 115381757 115381757 G A NRAP Silent p.L880L 0.33 TCGA-AC-A23H-01 10 115610362 115610362 G A DCLRE1A Missense_Mutation p.H168Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 10 116060265 116060265 G C AFAP1L2 Nonsense_Mutation p.S576* 0.25 TCGA-AC-A23H-01 10 116614984 116614984 G A FAM160B1 Missense_Mutation p.R611K 0.26 tolerated(0.77) benign(0.002) TCGA-AC-A23H-01 10 118029028 118029028 G C GFRA1 Silent p.V135V 0.34 TCGA-AC-A23H-01 10 118891694 118891694 C T VAX1 3'Flank 0.30 TCGA-AC-A23H-01 10 119134163 119134163 G C PDZD8 Missense_Mutation p.F192L 0.56 tolerated(0.38) probably_damaging(0.993) TCGA-AC-A23H-01 10 12039691 12039691 G A UPF2 Silent p.L608L 0.23 TCGA-AC-A23H-01 10 12046574 12046574 C G UPF2 Missense_Mutation p.E487Q 0.28 tolerated(0.12) probably_damaging(0.922) TCGA-AC-A23H-01 10 120867647 120867647 G A FAM45A Missense_Mutation p.E75K 0.25 deleterious(0.01) benign(0.211) TCGA-AC-A23H-01 10 121551653 121551653 C G INPP5F Intron 0.35 TCGA-AC-A23H-01 10 121551665 121551665 C T INPP5F Intron 0.32 TCGA-AC-A23H-01 10 12191594 12191594 G A SEC61A2 Missense_Mutation p.G74E 0.20 deleterious(0.01) possibly_damaging(0.733) TCGA-AC-A23H-01 10 122624665 122624665 G C WDR11 Missense_Mutation p.E274Q 0.39 deleterious(0.04) possibly_damaging(0.84) TCGA-AC-A23H-01 10 124320260 124320260 C G DMBT1 5'UTR 0.25 TCGA-AC-A23H-01 10 124691813 124691813 G A C10orf88 3'UTR 0.22 TCGA-AC-A23H-01 10 124697629 124697629 G A C10orf88 Missense_Mutation p.S232F 0.31 deleterious(0.02) benign(0.26) TCGA-AC-A23H-01 10 124708295 124708295 G C C10orf88 Missense_Mutation p.S173C 0.27 tolerated(0.08) benign(0.016) TCGA-AC-A23H-01 10 124921812 124921812 G A BUB3 Missense_Mutation p.E213K 0.46 deleterious(0.02) benign(0.086) TCGA-AC-A23H-01 10 125521653 125521653 C G CPXM2 Missense_Mutation p.W504C 0.24 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 10 127697055 127697055 C G FANK1 Missense_Mutation p.S262C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A23H-01 10 127797215 127797215 C G ADAM12 Missense_Mutation p.D233H 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 10 127798346 127798346 C G ADAM12 Missense_Mutation p.E226Q 0.29 deleterious(0.05) possibly_damaging(0.836) TCGA-AC-A23H-01 10 127798348 127798348 C T ADAM12 Missense_Mutation p.R225Q 0.30 tolerated(0.16) probably_damaging(0.995) TCGA-AC-A23H-01 10 128795088 128795088 C T DOCK1 Missense_Mutation p.L184F 0.28 deleterious(0) possibly_damaging(0.587) TCGA-AC-A23H-01 10 12940514 12940514 C A CCDC3 Nonsense_Mutation p.E239* 0.21 TCGA-AC-A23H-01 10 129900948 129900948 C G MKI67 Missense_Mutation p.L3052F 0.38 deleterious(0.03) possibly_damaging(0.897) TCGA-AC-A23H-01 10 13234536 13234536 G A MCM10 Missense_Mutation p.M572I 0.18 tolerated(0.33) benign(0.013) TCGA-AC-A23H-01 10 13386934 13386934 G C SEPHS1 Missense_Mutation p.S6C 0.21 tolerated(0.05) benign(0.345) TCGA-AC-A23H-01 10 133976789 133976789 C T JAKMIP3 Missense_Mutation p.S764L 0.45 deleterious(0) benign(0.197) TCGA-AC-A23H-01 10 134755214 134755214 C G TTC40 Missense_Mutation p.E63Q 0.27 deleterious(0.04) benign(0.1) TCGA-AC-A23H-01 10 134885510 134885510 G C GPR123 Missense_Mutation p.R90T 0.55 deleterious_low_confidence(0) benign(0.402) TCGA-AC-A23H-01 10 134906517 134906517 C G GPR123 Intron 0.25 TCGA-AC-A23H-01 10 135015172 135015172 G C KNDC1 Missense_Mutation p.D1053H 0.33 tolerated(0.12) benign(0.02) TCGA-AC-A23H-01 10 135076526 135076526 G A ADAM8 3'UTR 0.19 TCGA-AC-A23H-01 10 135165915 135165915 G A PRAP1 Missense_Mutation p.D143N 0.27 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 10 13534613 13534613 C T BEND7 Missense_Mutation p.D227N 0.27 deleterious_low_confidence(0.03) probably_damaging(0.987) TCGA-AC-A23H-01 10 135369482 135369482 C G SYCE1 Intron 0.43 TCGA-AC-A23H-01 10 13628941 13628941 C G PRPF18 5'UTR 0.36 TCGA-AC-A23H-01 10 15089148 15089148 C T OLAH 5'UTR 0.22 TCGA-AC-A23H-01 10 15559177 15559177 C G ITGA8 Missense_Mutation p.D1058H 0.26 tolerated(0.06) benign(0.299) TCGA-AC-A23H-01 10 15647745 15647745 C A ITGA8 Missense_Mutation p.D650Y 0.21 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 10 15902437 15902437 G A FAM188A 5'UTR 0.75 TCGA-AC-A23H-01 10 16870915 16870915 G C CUBN Missense_Mutation p.I3551M 0.28 deleterious(0.01) possibly_damaging(0.739) TCGA-AC-A23H-01 10 16878250 16878250 G A CUBN Silent p.F3388F 0.09 TCGA-AC-A23H-01 10 16957859 16957859 C A CUBN Nonsense_Mutation p.E2391* 0.19 TCGA-AC-A23H-01 10 16960708 16960708 G A CUBN Nonsense_Mutation p.Q2305* 0.29 TCGA-AC-A23H-01 10 16967398 16967398 G A CUBN Missense_Mutation p.S2163F 0.26 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 10 17275622 17275622 G A VIM Missense_Mutation p.E221K 0.12 deleterious(0.01) possibly_damaging(0.76) TCGA-AC-A23H-01 10 22021986 22021986 C A MLLT10 Missense_Mutation p.H793N 0.21 tolerated(0.2) benign(0.11) TCGA-AC-A23H-01 10 22022739 22022739 C G MLLT10 Missense_Mutation p.L847V 0.13 tolerated(0.55) probably_damaging(0.996) TCGA-AC-A23H-01 10 22678134 22678134 G T SPAG6 Missense_Mutation p.D300Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 10 22828897 22828897 C T PIP4K2A Intron 0.31 TCGA-AC-A23H-01 10 24722000 24722000 C T KIAA1217 Silent p.I210I 0.19 TCGA-AC-A23H-01 10 24822141 24822141 G C KIAA1217 Missense_Mutation p.G1130A 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 10 24835126 24835126 C G KIAA1217 Missense_Mutation p.S1902C 0.18 deleterious(0) benign(0.041) TCGA-AC-A23H-01 10 25010831 25010831 C T ARHGAP21 5'UTR 0.27 TCGA-AC-A23H-01 10 27382679 27382679 G C ANKRD26 Missense_Mutation p.L98V 0.22 tolerated(0.06) benign(0.373) TCGA-AC-A23H-01 10 27524046 27524046 A G ACBD5 Missense_Mutation p.W93R 0.12 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 10 27538996 27538996 C G RP11-85G18.6 RNA 0.24 TCGA-AC-A23H-01 10 29747482 29747482 C G SVIL Missense_Mutation p.D2147H 0.15 deleterious(0) probably_damaging(0.97) TCGA-AC-A23H-01 10 30318731 30318731 G A KIAA1462 Missense_Mutation p.R116W 0.35 tolerated(0.09) probably_damaging(0.988) TCGA-AC-A23H-01 10 3190235 3190235 G A PITRM1 Silent p.L672L 0.26 TCGA-AC-A23H-01 10 3202519 3202519 G C PITRM1 Missense_Mutation p.F265L 0.26 deleterious(0) possibly_damaging(0.896) TCGA-AC-A23H-01 10 327255 327255 C G DIP2C Missense_Mutation p.D1435H 0.32 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 10 32800676 32800676 G A CCDC7 Intron 0.29 TCGA-AC-A23H-01 10 33496503 33496503 C T NRP1 Missense_Mutation p.E586K 0.25 tolerated(0.41) benign(0.059) TCGA-AC-A23H-01 10 34649032 34649032 G C PARD3 Silent p.V621V 0.24 TCGA-AC-A23H-01 10 34759098 34759098 G C PARD3 Nonsense_Mutation p.S166* 0.23 TCGA-AC-A23H-01 10 35894523 35894523 C G GJD4 Missense_Mutation p.L10V 0.30 deleterious(0) probably_damaging(0.983) TCGA-AC-A23H-01 10 43088030 43088030 G A ZNF33B 3'UTR 0.32 TCGA-AC-A23H-01 10 44112175 44112175 C G ZNF485 Missense_Mutation p.I228M 0.32 tolerated(0.23) benign(0.101) TCGA-AC-A23H-01 10 45478085 45478085 G A RASSF4 Nonsense_Mutation p.W85* 0.15 TCGA-AC-A23H-01 10 45644249 45644249 G A RP11-445N18.7 RNA 0.26 TCGA-AC-A23H-01 10 46918625 46918625 C T RP11-38L15.8 5'Flank 0.48 TCGA-AC-A23H-01 10 4879734 4879734 G A AKR1E2 Silent p.L181L 0.30 TCGA-AC-A23H-01 10 50167832 50167832 C T WDFY4 Missense_Mutation p.R2733W 0.30 deleterious(0) possibly_damaging(0.69) TCGA-AC-A23H-01 10 50835719 50835719 G C CHAT Missense_Mutation p.L333F 0.34 deleterious(0.02) possibly_damaging(0.761) TCGA-AC-A23H-01 10 51748347 51748347 G T AGAP6 5'Flank 0.20 TCGA-AC-A23H-01 10 51877672 51877672 G A FAM21A Missense_Mutation p.E717K 0.50 tolerated(0.09) benign(0.411) TCGA-AC-A23H-01 10 52390824 52390824 G A RP11-50E11.3 RNA 0.23 TCGA-AC-A23H-01 10 5496965 5496965 G A NET1 Missense_Mutation p.E361K 0.27 tolerated(0.19) probably_damaging(0.997) TCGA-AC-A23H-01 10 5781904 5781904 C G FAM208B Missense_Mutation p.Q591E 0.28 tolerated(0.07) possibly_damaging(0.543) TCGA-AC-A23H-01 10 5789809 5789809 C G FAM208B Silent p.V1475V 0.30 TCGA-AC-A23H-01 10 5922263 5922263 G C ANKRD16 Nonsense_Mutation p.S309* 0.26 TCGA-AC-A23H-01 10 60560010 60560010 G A BICC1 Silent p.L594L 0.21 TCGA-AC-A23H-01 10 60937291 60937291 G A PHYHIPL Intron 0.31 TCGA-AC-A23H-01 10 65225504 65225504 G A JMJD1C 5'UTR 0.33 TCGA-AC-A23H-01 10 65380658 65380658 G C REEP3 3'UTR 0.33 TCGA-AC-A23H-01 10 6540497 6540497 C G PRKCQ Missense_Mutation p.E135Q 0.25 tolerated(0.11) benign(0.002) TCGA-AC-A23H-01 10 69918267 69918267 G C MYPN Missense_Mutation p.E448Q 0.33 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 10 69955271 69955271 C T MYPN Missense_Mutation p.S1047F 0.27 tolerated(0.06) benign(0.038) TCGA-AC-A23H-01 10 69970412 69970412 G C MYPN 3'UTR 0.45 TCGA-AC-A23H-01 10 70138254 70138254 C G RUFY2 Intron 0.24 TCGA-AC-A23H-01 10 70138408 70138408 G C RUFY2 Intron 0.28 TCGA-AC-A23H-01 10 70176510 70176510 G C DNA2 Missense_Mutation p.P1110A 0.26 tolerated(0.37) benign(0.012) TCGA-AC-A23H-01 10 70179628 70179628 C G DNA2 Missense_Mutation p.E993Q 0.23 tolerated(0.08) possibly_damaging(0.674) TCGA-AC-A23H-01 10 71874793 71874793 C T AIFM2 Missense_Mutation p.D285N 0.43 deleterious(0) probably_damaging(0.972) TCGA-AC-A23H-01 10 7212905 7212905 C G SFMBT2 Missense_Mutation p.K843N 0.17 tolerated(0.17) probably_damaging(0.999) TCGA-AC-A23H-01 10 72357736 72357736 G A PRF1 3'UTR 0.24 TCGA-AC-A23H-01 10 72358459 72358459 C T PRF1 Missense_Mutation p.D340N 0.26 tolerated(0.15) possibly_damaging(0.518) TCGA-AC-A23H-01 10 72496438 72496438 C G ADAMTS14 Missense_Mutation p.F499L 0.27 tolerated(0.05) benign(0.033) TCGA-AC-A23H-01 10 72531140 72531140 C T TBATA Missense_Mutation p.E350K 0.33 deleterious_low_confidence(0.04) benign(0.059) TCGA-AC-A23H-01 10 72645666 72645666 C T PCBD1 Silent p.L8L 0.19 TCGA-AC-A23H-01 10 73115968 73115968 C T SLC29A3 Silent p.L247L 0.22 TCGA-AC-A23H-01 10 7326088 7326088 C T SFMBT2 Missense_Mutation p.D184N 0.25 deleterious(0) benign(0.428) TCGA-AC-A23H-01 10 73483820 73483820 G A C10orf105 5'Flank 0.25 TCGA-AC-A23H-01 10 73510909 73510909 G A C10orf54 3'UTR 0.38 TCGA-AC-A23H-01 10 73510916 73510916 G C C10orf54 3'UTR 0.48 TCGA-AC-A23H-01 10 73552953 73552953 C G CDH23 5'Flank 0.21 TCGA-AC-A23H-01 10 75006556 75006556 C T DNAJC9 Missense_Mutation p.D71N 0.37 tolerated(0.07) probably_damaging(0.979) TCGA-AC-A23H-01 10 75147489 75147489 C T ANXA7 Silent p.Q219Q 0.36 TCGA-AC-A23H-01 10 75199636 75199636 C T PPP3CB Missense_Mutation p.E465K 0.29 tolerated(0.73) benign(0.002) TCGA-AC-A23H-01 10 75199651 75199651 C T PPP3CB Missense_Mutation p.E460K 0.31 tolerated(0.05) benign(0.023) TCGA-AC-A23H-01 10 75487222 75487222 T C RP11-464F9.1 RNA 0.52 TCGA-AC-A23H-01 10 75551246 75551246 C T ZSWIM8 Silent p.L436L 0.33 TCGA-AC-A23H-01 10 75671527 75671527 G C C10orf55 Silent p.L124L 0.29 TCGA-AC-A23H-01 10 76803733 76803733 G A DUPD1 Silent p.F81F 0.29 TCGA-AC-A23H-01 10 7825107 7825107 G C KIN Missense_Mutation p.S49C 0.24 deleterious(0) probably_damaging(0.969) TCGA-AC-A23H-01 10 7860723 7860723 C A TAF3 Silent p.I17I 0.20 TCGA-AC-A23H-01 10 78651293 78651293 G A KCNMA1 Missense_Mutation p.A1094V 0.44 deleterious(0.04) probably_damaging(0.971) TCGA-AC-A23H-01 10 79581386 79581386 G C DLG5 Silent p.L952L 0.50 TCGA-AC-A23H-01 10 79628691 79628691 C T AL391421.1 3'UTR 0.24 TCGA-AC-A23H-01 10 79781631 79781631 C A POLR3A Silent p.L345L 0.25 TCGA-AC-A23H-01 10 82277672 82277672 C T TSPAN14 Silent p.I251I 0.42 TCGA-AC-A23H-01 10 84744988 84744988 C T NRG3 Missense_Mutation p.S573F 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 10 85901238 85901238 G C GHITM 5'UTR 0.35 TCGA-AC-A23H-01 10 85961562 85961562 G A CDHR1 Splice_Site p.X176_splice 0.25 TCGA-AC-A23H-01 10 86131658 86131658 G T CCSER2 Nonsense_Mutation p.E284* 0.16 TCGA-AC-A23H-01 10 86133447 86133447 C T CCSER2 Missense_Mutation p.S497F 0.27 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 10 87362126 87362126 C T GRID1 Silent p.Q978Q 0.38 TCGA-AC-A23H-01 10 88213498 88213498 C G WAPAL Missense_Mutation p.Q916H 0.33 tolerated(0.13) benign(0.016) TCGA-AC-A23H-01 10 88421070 88421070 C T OPN4 Missense_Mutation p.S344L 0.36 deleterious(0.03) possibly_damaging(0.852) TCGA-AC-A23H-01 10 88702195 88702195 C G MMRN2 Missense_Mutation p.K782N 0.36 deleterious(0.03) probably_damaging(0.964) TCGA-AC-A23H-01 10 89514317 89514317 C T ATAD1 3'UTR 0.59 TCGA-AC-A23H-01 10 89622060 89622060 C T KLLN Missense_Mutation p.R62Q 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-AC-A23H-01 10 90521992 90521992 C T LIPN Silent p.V52V 0.43 TCGA-AC-A23H-01 10 90537882 90537882 G C LIPN Missense_Mutation p.K360N 0.35 tolerated(0.13) benign(0.053) TCGA-AC-A23H-01 10 91163445 91163445 G C IFIT1 Missense_Mutation p.E471D 0.50 tolerated(0.07) benign(0.03) TCGA-AC-A23H-01 10 91528502 91528502 T A KIF20B Missense_Mutation p.I1660K 0.22 tolerated(0.06) benign(0.047) TCGA-AC-A23H-01 10 92672642 92672642 G C ANKRD1 Missense_Mutation p.S314C 0.32 deleterious(0.03) benign(0.417) TCGA-AC-A23H-01 10 93011102 93011102 G A PCGF5 Missense_Mutation p.E127K 0.31 tolerated(0.19) benign(0) TCGA-AC-A23H-01 10 93390236 93390236 C T PPP1R3C Silent p.L134L 0.37 TCGA-AC-A23H-01 10 94396956 94396956 G A KIF11 Missense_Mutation p.D631N 0.36 tolerated(0.12) benign(0.013) TCGA-AC-A23H-01 10 94774009 94774009 C G EXOC6 Missense_Mutation p.F718L 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-AC-A23H-01 10 95549886 95549886 C T LGI1 Silent p.L154L 0.30 TCGA-AC-A23H-01 10 96701682 96701682 G A CYP2C9 Missense_Mutation p.G79E 0.31 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 10 96988506 96988506 G C C10orf129 Missense_Mutation p.D470H 0.33 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 10 97101164 97101164 G C SORBS1 Missense_Mutation p.L850V 0.41 deleterious(0.03) possibly_damaging(0.708) TCGA-AC-A23H-01 10 97402801 97402801 C G ALDH18A1 Missense_Mutation p.R84P 0.32 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 10 97697820 97697820 G C C10orf131 Missense_Mutation p.E129Q 0.30 tolerated(0.05) benign(0.014) TCGA-AC-A23H-01 10 98105587 98105587 G T OPALIN 3'UTR 0.21 TCGA-AC-A23H-01 10 98118853 98118853 C T OPALIN 5'UTR 0.31 TCGA-AC-A23H-01 10 98742657 98742657 G C C10orf12 Missense_Mutation p.D504H 0.24 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 10 98743124 98743124 G C C10orf12 Missense_Mutation p.K659N 0.30 tolerated(0.29) benign(0.286) TCGA-AC-A23H-01 10 99161013 99161013 G A RRP12 5'UTR 0.28 TCGA-AC-A23H-01 10 99219137 99219137 G C MMS19 Silent p.L962L 0.30 TCGA-AC-A23H-01 10 99655032 99655032 C G CRTAC1 Missense_Mutation p.E486Q 0.19 tolerated(0.94) benign(0.134) TCGA-AC-A23H-01 11 10024132 10024132 C A SBF2 Nonsense_Mutation p.E242* 0.25 TCGA-AC-A23H-01 11 100792306 100792306 G C ARHGAP42 Missense_Mutation p.E190Q 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-AC-A23H-01 11 1016002 1016002 G A MUC6 Nonsense_Mutation p.Q2267* 0.16 TCGA-AC-A23H-01 11 1017379 1017379 G A MUC6 Missense_Mutation p.P1808S 0.05 possibly_damaging(0.641) TCGA-AC-A23H-01 11 1017672 1017672 G A MUC6 Missense_Mutation p.S1710F 0.04 unknown(0) TCGA-AC-A23H-01 11 1018569 1018569 G A MUC6 Missense_Mutation p.T1411M 0.15 unknown(0) TCGA-AC-A23H-01 11 102221586 102221586 G T BIRC2 Missense_Mutation p.D303Y 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 11 102576452 102576452 C G MMP27 5'UTR 0.62 TCGA-AC-A23H-01 11 103036729 103036729 G C DYNC2H1 Missense_Mutation p.E1572Q 0.19 benign(0.041) TCGA-AC-A23H-01 11 103229063 103229063 C G DYNC2H1 Silent p.L4051L 0.23 TCGA-AC-A23H-01 11 103780254 103780254 C T PDGFD 3'UTR 0.50 TCGA-AC-A23H-01 11 10516483 10516483 C G AMPD3 Missense_Mutation p.S400C 0.17 deleterious(0.03) probably_damaging(0.933) TCGA-AC-A23H-01 11 108100034 108100034 C T ATM Silent p.I105I 0.20 TCGA-AC-A23H-01 11 108384606 108384606 C A EXPH5 Missense_Mutation p.R543I 0.22 deleterious(0) probably_damaging(0.916) TCGA-AC-A23H-01 11 108590534 108590534 C G DDX10 Missense_Mutation p.S474C 0.20 deleterious(0.02) probably_damaging(1) TCGA-AC-A23H-01 11 10874686 10874686 G A ZBED5 Nonsense_Mutation p.Q603* 0.25 TCGA-AC-A23H-01 11 110034055 110034055 G A ZC3H12C Silent p.L402L 0.29 TCGA-AC-A23H-01 11 110036325 110036325 G A ZC3H12C Missense_Mutation p.E839K 0.24 tolerated(0.09) probably_damaging(0.991) TCGA-AC-A23H-01 11 110134900 110134900 G C RDX Missense_Mutation p.F84L 0.25 deleterious(0.01) benign(0.36) TCGA-AC-A23H-01 11 110450375 110450375 C T ARHGAP20 Missense_Mutation p.E1099K 0.45 tolerated_low_confidence(0.42) benign(0.004) TCGA-AC-A23H-01 11 110501442 110501442 T C ARHGAP20 Missense_Mutation p.I88V 0.53 tolerated(0.18) benign(0.006) TCGA-AC-A23H-01 11 111612134 111612134 G A PPP2R1B Intron 0.88 TCGA-AC-A23H-01 11 111657048 111657048 G C ALG9 3'UTR 0.19 TCGA-AC-A23H-01 11 111796374 111796374 C G C11orf52 Intron 0.42 TCGA-AC-A23H-01 11 113146014 113146014 G C NCAM1 Missense_Mutation p.E877Q 0.48 deleterious(0.04) benign(0.074) TCGA-AC-A23H-01 11 113281348 113281348 C T DRD2 3'UTR 0.24 TCGA-AC-A23H-01 11 113700047 113700047 C A USP28 Nonsense_Mutation p.E311* 0.24 TCGA-AC-A23H-01 11 113702712 113702712 C G USP28 Missense_Mutation p.D255H 0.33 deleterious(0) probably_damaging(0.98) TCGA-AC-A23H-01 11 113860484 113860484 G C HTR3A Nonstop_Mutation p.*517Sext*14 0.42 TCGA-AC-A23H-01 11 114311459 114311459 G C REXO2 Missense_Mutation p.E77Q 0.54 tolerated(0.18) benign(0.214) TCGA-AC-A23H-01 11 114315287 114315288 - A REXO2 Frame_Shift_Ins p.S113Efs*11 0.18 TCGA-AC-A23H-01 11 116827762 116827762 C G SIK3 Missense_Mutation p.D40H 0.49 deleterious(0) benign(0.032) TCGA-AC-A23H-01 11 117060985 117060985 C T SIDT2 Missense_Mutation p.R533C 0.44 tolerated(0.06) probably_damaging(0.959) TCGA-AC-A23H-01 11 117062706 117062706 C G SIDT2 Silent p.V616V 0.17 TCGA-AC-A23H-01 11 117077851 117077851 G A PCSK7 Silent p.I604I 0.28 TCGA-AC-A23H-01 11 117232564 117232564 C T CEP164 Missense_Mutation p.S136L 0.25 tolerated(0.51) benign(0.017) TCGA-AC-A23H-01 11 117869438 117869438 G A IL10RA Silent p.K273K 0.23 TCGA-AC-A23H-01 11 118037424 118037424 G C SCN2B 3'UTR 0.79 TCGA-AC-A23H-01 11 118376746 118376746 C T KMT2A Missense_Mutation p.S3380L 0.30 benign(0.432) TCGA-AC-A23H-01 11 118764307 118764307 C T CXCR5 Silent p.F18F 0.33 TCGA-AC-A23H-01 11 118895497 118895497 G C SLC37A4 3'UTR 0.84 TCGA-AC-A23H-01 11 118940045 118940045 C G VPS11 Missense_Mutation p.I108M 0.31 deleterious(0.04) benign(0.426) TCGA-AC-A23H-01 11 118942376 118942376 C G VPS11 Nonsense_Mutation p.S235* 0.29 TCGA-AC-A23H-01 11 119029033 119029033 C T ABCG4 Silent p.L386L 0.25 TCGA-AC-A23H-01 11 119045285 119045285 C T NLRX1 Missense_Mutation p.R325C 0.39 deleterious(0.01) probably_damaging(0.937) TCGA-AC-A23H-01 11 119061433 119061433 C T CCDC153 Missense_Mutation p.E156K 0.22 deleterious(0.04) possibly_damaging(0.453) TCGA-AC-A23H-01 11 11964440 11964440 C T USP47 Nonsense_Mutation p.Q890* 0.20 TCGA-AC-A23H-01 11 119988996 119988996 G A TRIM29 Missense_Mutation p.S521F 0.32 deleterious(0) benign(0.179) TCGA-AC-A23H-01 11 121008252 121008252 G T TECTA Missense_Mutation p.G1022C 0.48 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 11 121425982 121425982 C T SORL1 Silent p.L842L 0.59 TCGA-AC-A23H-01 11 12183807 12183807 C G MICAL2 Silent p.L35L 0.21 TCGA-AC-A23H-01 11 122672027 122672027 G A UBASH3B Missense_Mutation p.D528N 0.42 tolerated(0.08) probably_damaging(1) TCGA-AC-A23H-01 11 122738259 122738259 G C CRTAM Missense_Mutation p.K320N 0.49 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 11 122931962 122931962 C T HSPA8 Missense_Mutation p.G24E 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.752) TCGA-AC-A23H-01 11 123516351 123516351 C T SCN3B Missense_Mutation p.E55K 0.16 tolerated(0.9) benign(0.001) TCGA-AC-A23H-01 11 124253080 124253080 G C OR8B2 Missense_Mutation p.H54D 0.26 deleterious_low_confidence(0) benign(0.157) TCGA-AC-A23H-01 11 124501208 124501208 G A TBRG1 Missense_Mutation p.D329N 0.51 tolerated(0.15) benign(0.028) TCGA-AC-A23H-01 11 124637008 124637008 C T MSANTD2 3'UTR 0.77 TCGA-AC-A23H-01 11 124637467 124637467 C T MSANTD2 Missense_Mutation p.E377K 0.56 tolerated_low_confidence(0.05) benign(0.124) TCGA-AC-A23H-01 11 124739441 124739441 G C ROBO3 Missense_Mutation p.E195Q 0.62 deleterious(0) possibly_damaging(0.887) TCGA-AC-A23H-01 11 124875068 124875068 G C CCDC15 Missense_Mutation p.E791Q 0.28 tolerated(0.14) possibly_damaging(0.821) TCGA-AC-A23H-01 11 124955534 124955534 C G SLC37A2 Missense_Mutation p.F463L 0.27 deleterious(0) probably_damaging(0.966) TCGA-AC-A23H-01 11 125333431 125333431 C G FEZ1 Missense_Mutation p.K149N 0.23 deleterious(0.05) possibly_damaging(0.819) TCGA-AC-A23H-01 11 125496685 125496685 G A CHEK1 Missense_Mutation p.D8N 0.51 tolerated(0.07) possibly_damaging(0.801) TCGA-AC-A23H-01 11 125770246 125770246 G C HYLS1 3'UTR 0.33 TCGA-AC-A23H-01 11 125848245 125848245 C G CDON Missense_Mutation p.D1104H 0.25 deleterious(0) probably_damaging(0.933) TCGA-AC-A23H-01 11 126201380 126201380 G C DCPS Missense_Mutation p.E153Q 0.36 deleterious(0.03) possibly_damaging(0.708) TCGA-AC-A23H-01 11 1271766 1271766 C G MUC5B Silent p.P4552P 0.15 TCGA-AC-A23H-01 11 1276082 1276082 C G MUC5B Silent p.L5212L 0.18 TCGA-AC-A23H-01 11 128564033 128564033 C T FLI1 5'UTR 0.50 TCGA-AC-A23H-01 11 128710027 128710027 C G KCNJ1 Missense_Mutation p.E57Q 0.50 tolerated(0.11) benign(0.336) TCGA-AC-A23H-01 11 130281431 130281431 C G ADAMTS8 Missense_Mutation p.G544A 0.22 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 11 130776528 130776528 C G SNX19 Missense_Mutation p.G752R 0.21 tolerated(0.11) benign(0.043) TCGA-AC-A23H-01 11 133790416 133790416 C G IGSF9B Missense_Mutation p.E1068D 0.29 tolerated_low_confidence(0.36) benign(0.013) TCGA-AC-A23H-01 11 134182722 134182722 G A GLB1L3 Missense_Mutation p.E481K 0.21 tolerated(0.49) benign(0.005) TCGA-AC-A23H-01 11 134217273 134217273 C T GLB1L2 Silent p.T168T 0.44 TCGA-AC-A23H-01 11 14541741 14541741 C G PSMA1 Intron 0.18 TCGA-AC-A23H-01 11 15170775 15170775 C T INSC Missense_Mutation p.R66W 0.23 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-AC-A23H-01 11 17408551 17408551 G T KCNJ11 Nonsense_Mutation p.S363* 0.11 TCGA-AC-A23H-01 11 17416823 17416823 C T ABCC8 Splice_Site p.X1436_splice 0.24 TCGA-AC-A23H-01 11 17432137 17432137 C G ABCC8 Missense_Mutation p.E874Q 0.22 deleterious(0.05) benign(0.09) TCGA-AC-A23H-01 11 17793520 17793520 G A KCNC1 Silent p.V293V 0.20 TCGA-AC-A23H-01 11 18195312 18195312 C G MRGPRX4 Missense_Mutation p.S170C 0.17 tolerated(0.16) benign(0.033) TCGA-AC-A23H-01 11 18267001 18267001 G C SAA2 Missense_Mutation p.Q98E 0.14 deleterious(0.04) possibly_damaging(0.793) TCGA-AC-A23H-01 11 18428974 18428974 G C LDHA 3'UTR 0.20 TCGA-AC-A23H-01 11 18733777 18733777 C G IGSF22 Missense_Mutation p.K750N 0.19 deleterious(0.01) probably_damaging(0.951) TCGA-AC-A23H-01 11 19213881 19213881 C T CSRP3 Intron 0.23 TCGA-AC-A23H-01 11 19252338 19252338 C T E2F8 Silent p.V370V 0.30 TCGA-AC-A23H-01 11 20070621 20070621 C G NAV2 Missense_Mutation p.S1440C 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-AC-A23H-01 11 20404603 20404603 C T HTATIP2 Missense_Mutation p.S228F 0.13 tolerated(0.39) benign(0.001) TCGA-AC-A23H-01 11 20652252 20652252 C T SLC6A5 Silent p.V505V 0.23 TCGA-AC-A23H-01 11 21594894 21594894 C T NELL1 Missense_Mutation p.S774L 0.31 tolerated(0.12) benign(0) TCGA-AC-A23H-01 11 27360465 27360465 C G CCDC34 Missense_Mutation p.R342T 0.38 deleterious(0) possibly_damaging(0.735) TCGA-AC-A23H-01 11 27390284 27390284 G A LGR4 Silent p.F662F 0.17 TCGA-AC-A23H-01 11 28084022 28084022 C T KIF18A Silent p.Q544Q 0.22 TCGA-AC-A23H-01 11 294744 294744 G T ATHL1 Nonsense_Mutation p.E737* 0.12 TCGA-AC-A23H-01 11 2985975 2985975 C G NAP1L4 Missense_Mutation p.D181H 0.18 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 11 30358242 30358242 C G ARL14EP Missense_Mutation p.S228C 0.14 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 11 3037024 3037024 C T CARS Missense_Mutation p.G658E 0.11 tolerated(0.15) benign(0.002) TCGA-AC-A23H-01 11 30516994 30516994 C T MPPED2 Missense_Mutation p.D129N 0.19 tolerated(0.27) benign(0.017) TCGA-AC-A23H-01 11 31125235 31125235 C G DCDC1 Missense_Mutation p.K611N 0.27 deleterious(0.04) probably_damaging(0.959) TCGA-AC-A23H-01 11 3128582 3128582 C T OSBPL5 Missense_Mutation p.E324K 0.24 tolerated(0.07) possibly_damaging(0.67) TCGA-AC-A23H-01 11 31392334 31392334 C A DNAJC24 Nonsense_Mutation p.Y13* 0.17 TCGA-AC-A23H-01 11 3140805 3140805 C T OSBPL5 Silent p.L221L 0.13 TCGA-AC-A23H-01 11 315068 315068 C G IFITM1 Silent p.V111V 0.22 TCGA-AC-A23H-01 11 32954530 32954530 C G QSER1 Missense_Mutation p.Q447E 0.29 tolerated(0.07) benign(0.263) TCGA-AC-A23H-01 11 32954651 32954651 C G QSER1 Missense_Mutation p.S487C 0.19 deleterious(0) possibly_damaging(0.728) TCGA-AC-A23H-01 11 33123740 33123740 G A CSTF3 Missense_Mutation p.T270I 0.42 tolerated(0.2) benign(0.073) TCGA-AC-A23H-01 11 33370299 33370299 G A HIPK3 Silent p.V867V 0.22 TCGA-AC-A23H-01 11 33744195 33744195 C G CD59 Intron 0.56 TCGA-AC-A23H-01 11 3381001 3381001 C T ZNF195 Missense_Mutation p.E413K 0.19 tolerated(0.1) probably_damaging(0.973) TCGA-AC-A23H-01 11 34160972 34160972 C T NAT10 Silent p.F783F 0.20 TCGA-AC-A23H-01 11 34163894 34163894 G A NAT10 Missense_Mutation p.E962K 0.22 tolerated(0.77) benign(0.001) TCGA-AC-A23H-01 11 36297734 36297734 C T COMMD9 Missense_Mutation p.D137N 0.34 deleterious(0.01) probably_damaging(0.914) TCGA-AC-A23H-01 11 3700891 3700891 C T NUP98 Missense_Mutation p.D1656N 0.14 tolerated(0.3) possibly_damaging(0.828) TCGA-AC-A23H-01 11 3774602 3774602 C T NUP98 Missense_Mutation p.G404E 0.14 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 11 379938 379938 C T B4GALNT4 Missense_Mutation p.S854L 0.38 tolerated(0.21) unknown(0) TCGA-AC-A23H-01 11 3845301 3845301 C A PGAP2 Silent p.G179G 0.11 TCGA-AC-A23H-01 11 43471726 43471726 G T TTC17 Missense_Mutation p.D961Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 11 44076821 44076821 C G ACCSL Missense_Mutation p.H373Q 0.41 tolerated(0.07) possibly_damaging(0.851) TCGA-AC-A23H-01 11 44952332 44952332 G A TSPAN18 3'UTR 0.19 TCGA-AC-A23H-01 11 45939382 45939382 G A PEX16 5'Flank 0.38 TCGA-AC-A23H-01 11 45986874 45986874 C G PHF21A Missense_Mutation p.E329Q 0.20 tolerated(0.39) possibly_damaging(0.871) TCGA-AC-A23H-01 11 46397491 46397491 C T DGKZ Silent p.L855L 0.42 TCGA-AC-A23H-01 11 4661804 4661804 C G OR51D1 Missense_Mutation p.L262V 0.16 deleterious(0.02) benign(0.167) TCGA-AC-A23H-01 11 46799088 46799088 C T CKAP5 Silent p.L921L 0.15 TCGA-AC-A23H-01 11 46880828 46880828 C G LRP4 Missense_Mutation p.K1808N 0.20 deleterious_low_confidence(0.03) benign(0.107) TCGA-AC-A23H-01 11 46903306 46903306 C T LRP4 Missense_Mutation p.D921N 0.13 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 11 47296497 47296497 C G MADD Missense_Mutation p.S149C 0.18 deleterious(0) benign(0.443) TCGA-AC-A23H-01 11 47297700 47297700 C G MADD Missense_Mutation p.L304V 0.09 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 11 47371455 47371455 G A MYBPC3 Missense_Mutation p.S175L 0.21 tolerated(0.12) benign(0.445) TCGA-AC-A23H-01 11 47436029 47436029 G A SLC39A13 Intron 0.20 TCGA-AC-A23H-01 11 47436168 47436168 C T SLC39A13 Intron 0.30 TCGA-AC-A23H-01 11 47594440 47594440 G A KBTBD4 3'UTR 0.36 TCGA-AC-A23H-01 11 47594846 47594846 C T KBTBD4 Missense_Mutation p.R414Q 0.13 tolerated(0.14) benign(0.105) TCGA-AC-A23H-01 11 47608280 47608280 G A FAM180B Missense_Mutation p.R28K 0.32 tolerated_low_confidence(0.19) benign(0.001) TCGA-AC-A23H-01 11 47801924 47801924 C T NUP160 Missense_Mutation p.E1398K 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-AC-A23H-01 11 47837500 47837500 C T NUP160 Missense_Mutation p.E505K 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A23H-01 11 47840937 47840937 G C NUP160 Missense_Mutation p.Q451E 0.27 tolerated(0.23) possibly_damaging(0.76) TCGA-AC-A23H-01 11 4825279 4825279 G A OR52R1 Missense_Mutation p.S111F 0.21 tolerated(0.11) benign(0.444) TCGA-AC-A23H-01 11 4825378 4825378 G T OR52R1 Missense_Mutation p.S78Y 0.15 deleterious(0) possibly_damaging(0.775) TCGA-AC-A23H-01 11 48285505 48285505 C G OR4X1 Silent p.L31L 0.19 TCGA-AC-A23H-01 11 48327992 48327992 C G OR4S1 Missense_Mutation p.S73C 0.17 deleterious(0) possibly_damaging(0.541) TCGA-AC-A23H-01 11 50003840 50003840 C G OR4C12 Missense_Mutation p.L66F 0.12 tolerated_low_confidence(1) benign(0.005) TCGA-AC-A23H-01 11 50003881 50003881 G C OR4C12 Missense_Mutation p.L53V 0.33 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-AC-A23H-01 11 5068502 5068502 C T OR52J3 Silent p.I249I 0.15 TCGA-AC-A23H-01 11 5322877 5322877 G A OR51B4 Silent p.F100F 0.47 TCGA-AC-A23H-01 11 533450 533450 C T HRAS Intron 0.30 TCGA-AC-A23H-01 11 55032430 55032430 C G TRIM48 Missense_Mutation p.I33M 0.25 deleterious(0.02) possibly_damaging(0.68) TCGA-AC-A23H-01 11 55579138 55579138 T C OR5L1 Silent p.L66L 0.16 TCGA-AC-A23H-01 11 55595173 55595173 C T OR5L2 Missense_Mutation p.S160L 0.34 tolerated(0.9) benign(0) TCGA-AC-A23H-01 11 55607001 55607001 C G OR5D16 Silent p.L258L 0.15 TCGA-AC-A23H-01 11 5566226 5566226 G C OR52H1 Missense_Mutation p.F176L 0.16 deleterious(0) possibly_damaging(0.728) TCGA-AC-A23H-01 11 5566673 5566673 G T OR52H1 Silent p.G27G 0.15 TCGA-AC-A23H-01 11 55735242 55735242 G T OR10AG1 Nonsense_Mutation p.S233* 0.24 TCGA-AC-A23H-01 11 55735328 55735328 C G OR10AG1 Missense_Mutation p.L204F 0.42 deleterious(0.02) possibly_damaging(0.684) TCGA-AC-A23H-01 11 55904866 55904866 G A OR8J3 Missense_Mutation p.S110L 0.61 deleterious(0.02) benign(0.109) TCGA-AC-A23H-01 11 55927406 55927406 G C OR8K5 Missense_Mutation p.L130V 0.10 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 11 56086665 56086665 G T OR8K3 Missense_Mutation p.D295Y 0.10 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-AC-A23H-01 11 5618099 5618099 C G TRIM6 5'UTR 0.26 TCGA-AC-A23H-01 11 56258825 56258825 C T OR5M8 Missense_Mutation p.V8M 0.29 deleterious(0.01) benign(0.287) TCGA-AC-A23H-01 11 5632299 5632299 G C TRIM6 Missense_Mutation p.Q426H 0.11 deleterious(0.01) probably_damaging(0.963) TCGA-AC-A23H-01 11 56511019 56511019 G T OR9G4 Missense_Mutation p.S90Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 11 56756597 56756597 A G OR5AK2 Missense_Mutation p.D70G 0.20 deleterious(0) possibly_damaging(0.687) TCGA-AC-A23H-01 11 57089272 57089272 C T TNKS1BP1 Missense_Mutation p.E30K 0.38 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 11 57310508 57310508 G A SMTNL1 Silent p.T149T 0.65 TCGA-AC-A23H-01 11 57321943 57321943 C G UBE2L6 Missense_Mutation p.E93Q 0.56 tolerated(0.06) benign(0.048) TCGA-AC-A23H-01 11 57327816 57327816 G A UBE2L6 Silent p.L39L 0.12 TCGA-AC-A23H-01 11 57369596 57369596 C T SERPING1 Silent p.F213F 0.24 TCGA-AC-A23H-01 11 57427107 57427107 G A CLP1 Silent p.K53K 0.24 TCGA-AC-A23H-01 11 57428680 57428680 C G CLP1 Silent p.L350L 0.16 TCGA-AC-A23H-01 11 57472688 57472688 C G MED19 Silent p.L77L 0.25 TCGA-AC-A23H-01 11 57511699 57511699 C G BTBD18 Missense_Mutation p.W682C 0.15 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-AC-A23H-01 11 57583996 57583996 C T CTNND1 3'UTR 0.18 TCGA-AC-A23H-01 11 57947566 57947566 C T OR9Q1 Missense_Mutation p.S217F 0.18 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 11 58385028 58385028 G A ZFP91 Missense_Mutation p.S521N 0.38 tolerated_low_confidence(0.11) benign(0.079) TCGA-AC-A23H-01 11 58723666 58723666 G A GLYATL1 3'UTR 0.25 TCGA-AC-A23H-01 11 59271133 59271133 C G OR4D11 Missense_Mutation p.L29V 0.18 tolerated(1) benign(0.012) TCGA-AC-A23H-01 11 59282894 59282894 G C OR4D9 Missense_Mutation p.G170A 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 11 59405666 59405666 C T PATL1 3'UTR 0.33 TCGA-AC-A23H-01 11 59633941 59633941 C G TCN1 Translation_Start_Site p.M1? 0.34 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 11 5968729 5968729 G A OR56A3 Missense_Mutation p.M51I 0.41 tolerated(1) benign(0) TCGA-AC-A23H-01 11 60075807 60075807 G C MS4A4A 3'UTR 0.24 TCGA-AC-A23H-01 11 6007810 6007810 G C OR52L1 Missense_Mutation p.I117M 0.19 deleterious(0.03) possibly_damaging(0.472) TCGA-AC-A23H-01 11 60183888 60183888 T A MS4A14 Missense_Mutation p.S516T 0.17 tolerated(0.5) benign(0.064) TCGA-AC-A23H-01 11 60183892 60183892 G C MS4A14 Missense_Mutation p.R517T 0.16 deleterious(0.01) possibly_damaging(0.849) TCGA-AC-A23H-01 11 60565946 60565946 G C MS4A10 Missense_Mutation p.Q227H 0.19 deleterious(0) benign(0.135) TCGA-AC-A23H-01 11 60694793 60694793 C G TMEM132A Missense_Mutation p.S73C 0.22 deleterious(0) probably_damaging(0.952) TCGA-AC-A23H-01 11 61026670 61026670 G C VWCE Missense_Mutation p.S782C 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-AC-A23H-01 11 61081549 61081549 C T DDB1 Missense_Mutation p.E575K 0.21 tolerated(0.24) benign(0.005) TCGA-AC-A23H-01 11 61113373 61113373 G C DAK Missense_Mutation p.K510N 0.29 tolerated(0.22) benign(0.197) TCGA-AC-A23H-01 11 61511557 61511557 C T DAGLA Nonsense_Mutation p.Q909* 0.35 TCGA-AC-A23H-01 11 62290072 62290072 C T AHNAK Silent p.K3939K 0.18 TCGA-AC-A23H-01 11 62295399 62295399 C G AHNAK Missense_Mutation p.D2164H 0.24 probably_damaging(0.988) TCGA-AC-A23H-01 11 62296327 62296327 C T AHNAK Silent p.K1854K 0.21 TCGA-AC-A23H-01 11 62376011 62376011 C T EML3 Intron 0.16 TCGA-AC-A23H-01 11 62378355 62378355 C T EML3 Missense_Mutation p.E188K 0.43 tolerated(0.43) benign(0.146) TCGA-AC-A23H-01 11 62381027 62381027 C G ROM1 Missense_Mutation p.L92V 0.22 deleterious(0) benign(0.005) TCGA-AC-A23H-01 11 6238629 6238629 G A FAM160A2 Silent p.L743L 0.18 TCGA-AC-A23H-01 11 62394582 62394582 C G GANAB Missense_Mutation p.V776L 0.21 deleterious(0) benign(0.407) TCGA-AC-A23H-01 11 62458096 62458096 C T BSCL2 Missense_Mutation p.E408K 0.35 deleterious_low_confidence(0.05) probably_damaging(0.954) TCGA-AC-A23H-01 11 62458150 62458150 C T BSCL2 Missense_Mutation p.E390K 0.14 tolerated(0.17) benign(0.008) TCGA-AC-A23H-01 11 62569075 62569075 G C NXF1 Missense_Mutation p.S223C 0.14 deleterious(0.03) benign(0.03) TCGA-AC-A23H-01 11 62601954 62601954 C G WDR74 Missense_Mutation p.E222Q 0.65 tolerated(0.08) benign(0.196) TCGA-AC-A23H-01 11 6262772 6262772 G C CNGA4 Silent p.L343L 0.40 TCGA-AC-A23H-01 11 62677493 62677493 C G CHRM1 Missense_Mutation p.E360D 0.40 tolerated(0.06) possibly_damaging(0.874) TCGA-AC-A23H-01 11 62886349 62886349 C T SLC22A24 Intron 0.18 TCGA-AC-A23H-01 11 63676392 63676392 G C MARK2 Missense_Mutation p.E684Q 0.59 tolerated(0.08) benign(0.002) TCGA-AC-A23H-01 11 63681960 63681960 C G RCOR2 Missense_Mutation p.K178N 0.25 deleterious(0) possibly_damaging(0.742) TCGA-AC-A23H-01 11 63767714 63767714 G C MACROD1 Missense_Mutation p.R217G 0.24 tolerated(0.38) probably_damaging(0.998) TCGA-AC-A23H-01 11 63971708 63971708 C G STIP1 3'UTR 0.30 TCGA-AC-A23H-01 11 64026030 64026030 G A PLCB3 Nonsense_Mutation p.W366* 0.13 TCGA-AC-A23H-01 11 64039112 64039112 C T BAD Missense_Mutation p.M117I 0.18 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 11 640489 640489 C G DRD4 Silent p.V382V 0.25 TCGA-AC-A23H-01 11 64359229 64359229 G C SLC22A12 Missense_Mutation p.L67F 0.16 deleterious(0.05) benign(0.06) TCGA-AC-A23H-01 11 64418829 64418829 G C NRXN2 Missense_Mutation p.S939C 0.12 deleterious(0) probably_damaging(0.974) TCGA-AC-A23H-01 11 64496381 64496381 G A RASGRP2 Silent p.F575F 0.27 TCGA-AC-A23H-01 11 64514172 64514172 G T PYGM Missense_Mutation p.P830T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A23H-01 11 64571733 64571733 G C MEN1 3'UTR 0.23 TCGA-AC-A23H-01 11 64571837 64571837 G C MEN1 Missense_Mutation p.S606C 0.16 deleterious(0.01) possibly_damaging(0.744) TCGA-AC-A23H-01 11 64577258 64577258 T A MEN1 Silent p.R108R 0.46 TCGA-AC-A23H-01 11 64577259 64577259 C G MEN1 Missense_Mutation p.R108P 0.46 tolerated(0.07) possibly_damaging(0.891) TCGA-AC-A23H-01 11 64603989 64603989 G C CDC42BPG Missense_Mutation p.D466E 0.22 tolerated(0.92) benign(0.002) TCGA-AC-A23H-01 11 64674139 64674139 C T ATG2A Missense_Mutation p.R994Q 0.32 tolerated(0.8) benign(0.002) TCGA-AC-A23H-01 11 64681348 64681348 C A ATG2A Nonsense_Mutation p.E179* 0.12 TCGA-AC-A23H-01 11 64695827 64695827 C A PPP2R5B Missense_Mutation p.H218N 0.31 deleterious(0) benign(0.195) TCGA-AC-A23H-01 11 64888320 64888320 C T FAU Intron 0.32 TCGA-AC-A23H-01 11 64889615 64889615 G A FAU 5'UTR 0.18 TCGA-AC-A23H-01 11 64938826 64938826 G A SPDYC Missense_Mutation p.E19K 0.18 tolerated_low_confidence(0.14) probably_damaging(0.968) TCGA-AC-A23H-01 11 65004159 65004159 G A SLC22A20 RNA 0.23 TCGA-AC-A23H-01 11 65034164 65034164 C G POLA2 Missense_Mutation p.S64C 0.42 deleterious(0.05) possibly_damaging(0.778) TCGA-AC-A23H-01 11 65108953 65108953 G C DPF2 Missense_Mutation p.E129Q 0.07 tolerated(0.08) benign(0.095) TCGA-AC-A23H-01 11 65319033 65319033 C A LTBP3 Missense_Mutation p.V512L 0.15 tolerated(0.16) benign(0.001) TCGA-AC-A23H-01 11 65384451 65384451 G C PCNXL3 Missense_Mutation p.E104Q 0.15 tolerated(0.37) benign(0.01) TCGA-AC-A23H-01 11 65384757 65384757 C G PCNXL3 Silent p.V126V 0.17 TCGA-AC-A23H-01 11 65486741 65486741 C G KAT5 3'UTR 0.23 TCGA-AC-A23H-01 11 6566518 6566518 C G DNHD1 Missense_Mutation p.S1450C 0.22 benign(0.186) TCGA-AC-A23H-01 11 65731532 65731532 C G SART1 Intron 0.16 TCGA-AC-A23H-01 11 65745368 65745368 G T SART1 Nonsense_Mutation p.E724* 0.44 TCGA-AC-A23H-01 11 65835430 65835430 C T SF3B2 Nonsense_Mutation p.Q782* 0.16 TCGA-AC-A23H-01 11 6588481 6588481 G T DNHD1 Silent p.L3914L 0.30 TCGA-AC-A23H-01 11 66033149 66033149 G A KLC2 Missense_Mutation p.R453H 0.35 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 11 66034243 66034243 C G KLC2 Intron 0.38 TCGA-AC-A23H-01 11 66082629 66082629 G C CD248 Missense_Mutation p.Q624E 0.14 tolerated(0.15) benign(0.002) TCGA-AC-A23H-01 11 66136072 66136072 G C SLC29A2 Silent p.L162L 0.22 TCGA-AC-A23H-01 11 6631396 6631396 G A ILK Missense_Mutation p.E366K 0.19 tolerated(0.14) possibly_damaging(0.628) TCGA-AC-A23H-01 11 66324666 66324666 G A CTD-3074O7.2 3'Flank 0.19 TCGA-AC-A23H-01 11 66324679 66324679 G C CTD-3074O7.2 3'Flank 0.24 TCGA-AC-A23H-01 11 66335102 66335102 C T CTSF Missense_Mutation p.G115E 0.26 deleterious(0.01) probably_damaging(0.911) TCGA-AC-A23H-01 11 66359836 66359836 G A CCDC87 Silent p.F217F 0.11 TCGA-AC-A23H-01 11 66410985 66410985 G C RBM14-RBM4 Missense_Mutation p.Q134H 0.30 tolerated(0.23) benign(0.039) TCGA-AC-A23H-01 11 66455756 66455756 C G SPTBN2 Missense_Mutation p.K2086N 0.14 tolerated(0.39) benign(0.037) TCGA-AC-A23H-01 11 66455768 66455768 C T SPTBN2 Silent p.E2082E 0.14 TCGA-AC-A23H-01 11 66625782 66625782 C T LRFN4 Silent p.F189F 0.21 TCGA-AC-A23H-01 11 66627743 66627743 G C LRFN4 3'UTR 0.31 TCGA-AC-A23H-01 11 66999270 66999270 G A KDM2A Missense_Mutation p.D440N 0.27 tolerated(0.48) benign(0.001) TCGA-AC-A23H-01 11 67047367 67047367 G A ADRBK1 Missense_Mutation p.E167K 0.15 tolerated(0.07) benign(0.224) TCGA-AC-A23H-01 11 67066560 67066560 G C ANKRD13D Missense_Mutation p.E255Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 11 67076953 67076953 G A SSH3 Missense_Mutation p.E383K 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-AC-A23H-01 11 67200852 67200852 G C RPS6KB2 Missense_Mutation p.K280N 0.15 deleterious(0.04) possibly_damaging(0.733) TCGA-AC-A23H-01 11 67811318 67811318 G A TCIRG1 Missense_Mutation p.E251K 0.21 tolerated(0.33) benign(0.098) TCGA-AC-A23H-01 11 67811363 67811363 G C TCIRG1 Missense_Mutation p.E266Q 0.10 deleterious(0) possibly_damaging(0.799) TCGA-AC-A23H-01 11 68115362 68115362 G A LRP5 Missense_Mutation p.D47N 0.27 tolerated(0.58) benign(0.12) TCGA-AC-A23H-01 11 68115549 68115549 C T LRP5 Missense_Mutation p.S109F 0.13 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 11 6816496 6816496 C G OR6A2 Missense_Mutation p.Q148H 0.15 tolerated(0.43) benign(0.005) TCGA-AC-A23H-01 11 68171130 68171130 G C LRP5 Silent p.L588L 0.14 TCGA-AC-A23H-01 11 68315555 68315555 G A PPP6R3 Silent p.K145K 0.27 TCGA-AC-A23H-01 11 68505990 68505990 G A MTL5 Intron 0.38 TCGA-AC-A23H-01 11 68522396 68522396 C G CPT1A 3'UTR 0.15 TCGA-AC-A23H-01 11 68542877 68542877 G C CPT1A Silent p.L494L 0.14 TCGA-AC-A23H-01 11 68822796 68822796 C G TPCN2 Silent p.V135V 0.07 TCGA-AC-A23H-01 11 68845988 68845988 G C TPCN2 Missense_Mutation p.Q423H 0.07 deleterious(0.01) possibly_damaging(0.77) TCGA-AC-A23H-01 11 68855388 68855388 G C TPCN2 Silent p.L742L 0.08 TCGA-AC-A23H-01 11 6898524 6898524 C G OR10A4 Missense_Mutation p.L216V 0.18 tolerated(0.09) probably_damaging(0.976) TCGA-AC-A23H-01 11 69062770 69062770 C G MYEOV Intron 0.04 TCGA-AC-A23H-01 11 69063407 69063407 C T MYEOV Missense_Mutation p.H164Y 0.10 tolerated_low_confidence(0.35) benign(0.031) TCGA-AC-A23H-01 11 6977355 6977355 C G ZNF215 Missense_Mutation p.Q383E 0.23 tolerated(0.54) probably_damaging(0.982) TCGA-AC-A23H-01 11 69978136 69978136 C G ANO1 Silent p.L403L 0.11 TCGA-AC-A23H-01 11 70118414 70118414 G A PPFIA1 Missense_Mutation p.E46K 0.05 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 11 70130068 70130068 C G PPFIA1 Intron 0.06 TCGA-AC-A23H-01 11 70194314 70194314 G T PPFIA1 Nonsense_Mutation p.E651* 0.11 TCGA-AC-A23H-01 11 7020995 7020995 T C ZNF214 3'UTR 0.14 TCGA-AC-A23H-01 11 70221236 70221236 C T PPFIA1 Intron 0.08 TCGA-AC-A23H-01 11 70318978 70318978 C T SHANK2 Missense_Mutation p.R1850K 0.05 deleterious(0) benign(0.067) TCGA-AC-A23H-01 11 70319432 70319432 C A SHANK2 Nonsense_Mutation p.E1699* 0.06 TCGA-AC-A23H-01 11 70331984 70331984 G C SHANK2 Missense_Mutation p.L1473V 0.11 tolerated(0.24) benign(0.364) TCGA-AC-A23H-01 11 70506043 70506043 C T SHANK2 Missense_Mutation p.E652K 0.09 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 11 70507734 70507734 C T SHANK2 Missense_Mutation p.E636K 0.08 deleterious(0) probably_damaging(0.923) TCGA-AC-A23H-01 11 7064922 7064922 G A NLRP14 Silent p.K555K 0.13 TCGA-AC-A23H-01 11 70805586 70805586 C A SHANK2 Silent p.L247L 0.05 TCGA-AC-A23H-01 11 71189462 71189462 G C NADSYN1 Missense_Mutation p.D274H 0.06 deleterious(0.01) probably_damaging(0.966) TCGA-AC-A23H-01 11 71277360 71277360 C A KRTAP5-10 3'UTR 0.07 TCGA-AC-A23H-01 11 71293714 71293714 C T KRTAP5-11 Missense_Mutation p.C57Y 0.20 deleterious_low_confidence(0) unknown(0) TCGA-AC-A23H-01 11 71726765 71726765 G A NUMA1 Missense_Mutation p.S595F 0.43 benign(0.007) TCGA-AC-A23H-01 11 71727075 71727075 G A NUMA1 Missense_Mutation p.H492Y 0.39 benign(0.15) TCGA-AC-A23H-01 11 71850524 71850524 C G FOLR3 Nonsense_Mutation p.S206* 0.17 TCGA-AC-A23H-01 11 71949089 71949089 C A INPPL1 Missense_Mutation p.P1186T 0.15 tolerated(0.58) benign(0) TCGA-AC-A23H-01 11 72406638 72406638 C G ARAP1 Missense_Mutation p.E1152D 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-AC-A23H-01 11 73687948 73687948 C G UCP2 Missense_Mutation p.G151A 0.28 tolerated(0.57) benign(0.02) TCGA-AC-A23H-01 11 74546613 74546613 C G RNF169 Missense_Mutation p.S322C 0.59 deleterious(0.01) possibly_damaging(0.815) TCGA-AC-A23H-01 11 74705613 74705613 G A NEU3 Missense_Mutation p.D52N 0.15 tolerated(0.82) benign(0.048) TCGA-AC-A23H-01 11 7531061 7531061 C G OLFML1 Missense_Mutation p.S284C 0.41 deleterious(0) possibly_damaging(0.739) TCGA-AC-A23H-01 11 76227257 76227257 G A C11orf30 Missense_Mutation p.A529T 0.53 tolerated(0.37) benign(0.001) TCGA-AC-A23H-01 11 76372514 76372514 G C LRRC32 Silent p.L41L 0.21 TCGA-AC-A23H-01 11 76701616 76701616 C T ACER3 Nonsense_Mutation p.Q146* 0.51 TCGA-AC-A23H-01 11 76892550 76892550 C G MYO7A Nonsense_Mutation p.S940* 0.30 TCGA-AC-A23H-01 11 77051693 77051693 C T PAK1 Missense_Mutation p.E372K 0.49 deleterious(0) possibly_damaging(0.834) TCGA-AC-A23H-01 11 77930371 77930371 C G GAB2 Missense_Mutation p.E660Q 0.52 tolerated(0.12) probably_damaging(0.994) TCGA-AC-A23H-01 11 7817782 7817782 G A OR5P2 Silent p.T236T 0.19 TCGA-AC-A23H-01 11 7818342 7818342 G C OR5P2 Missense_Mutation p.Q50E 0.24 deleterious(0.01) benign(0.031) TCGA-AC-A23H-01 11 78383083 78383083 C G TENM4 Missense_Mutation p.E1930Q 0.52 deleterious(0.01) possibly_damaging(0.856) TCGA-AC-A23H-01 11 78383155 78383155 C T TENM4 Missense_Mutation p.E1906K 0.46 tolerated(0.07) benign(0.254) TCGA-AC-A23H-01 11 788566 788566 C G CEND1 Missense_Mutation p.R4T 0.34 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-AC-A23H-01 11 8122480 8122480 C G TUB Silent p.L496L 0.17 TCGA-AC-A23H-01 11 83497702 83497702 C G DLG2 Intron 0.33 TCGA-AC-A23H-01 11 83810051 83810051 C T DLG2 Missense_Mutation p.D222N 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-AC-A23H-01 11 85692938 85692938 G A PICALM Missense_Mutation p.S542L 0.75 deleterious(0.02) possibly_damaging(0.642) TCGA-AC-A23H-01 11 85989108 85989108 T C EED Intron 0.41 TCGA-AC-A23H-01 11 8639499 8639499 G C TRIM66 Missense_Mutation p.Q1244E 0.44 deleterious(0.01) probably_damaging(0.977) TCGA-AC-A23H-01 11 8639513 8639513 G C TRIM66 Missense_Mutation p.A1239G 0.42 deleterious(0.02) benign(0.341) TCGA-AC-A23H-01 11 8660338 8660338 G A TRIM66 Nonsense_Mutation p.Q578* 0.21 TCGA-AC-A23H-01 11 8704177 8704177 C T RPL27A 5'UTR 0.32 TCGA-AC-A23H-01 11 89450736 89450736 C T TRIM77 Missense_Mutation p.S350F 0.45 tolerated(1) probably_damaging(0.915) TCGA-AC-A23H-01 11 89451010 89451010 C G TRIM77 Silent p.L441L 0.18 TCGA-AC-A23H-01 11 89537373 89537373 C T TRIM49 Missense_Mutation p.E89K 0.10 deleterious(0.01) possibly_damaging(0.904) TCGA-AC-A23H-01 11 89956074 89956074 C G CHORDC1 Missense_Mutation p.E17Q 0.31 tolerated(0.14) benign(0.063) TCGA-AC-A23H-01 11 9005663 9005663 C G NRIP3 Missense_Mutation p.E191Q 0.18 tolerated(0.14) possibly_damaging(0.481) TCGA-AC-A23H-01 11 92526110 92526110 G A FAT3 Missense_Mutation p.E1597K 0.21 benign(0.085) TCGA-AC-A23H-01 11 92577427 92577427 G C FAT3 Missense_Mutation p.D3632H 0.36 probably_damaging(0.947) TCGA-AC-A23H-01 11 93460369 93460369 G A KIAA1731 Missense_Mutation p.D2243N 0.62 tolerated(0.08) possibly_damaging(0.65) TCGA-AC-A23H-01 11 93797515 93797515 C T HEPHL1 Missense_Mutation p.S216L 0.39 tolerated(0.1) benign(0.003) TCGA-AC-A23H-01 11 95578204 95578204 G T MTMR2 Silent p.L433L 0.28 TCGA-AC-A23H-01 11 95581039 95581039 C G MTMR2 Missense_Mutation p.E340Q 0.42 deleterious(0) benign(0.361) TCGA-AC-A23H-01 11 9598794 9598794 G C WEE1 Missense_Mutation p.Q375H 0.40 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 11 96125259 96125259 C G JRKL Silent p.L482L 0.46 TCGA-AC-A23H-01 11 9715690 9715690 C T SWAP70 Intron 0.30 TCGA-AC-A23H-01 11 9759853 9759853 G A SWAP70 Missense_Mutation p.E392K 0.44 tolerated(0.32) possibly_damaging(0.728) TCGA-AC-A23H-01 12 100452656 100452656 G A UHRF1BP1L Missense_Mutation p.S800L 0.63 tolerated(0.14) benign(0.102) TCGA-AC-A23H-01 12 100482793 100482793 C T UHRF1BP1L Silent p.V307V 0.28 TCGA-AC-A23H-01 12 100657285 100657285 C A DEPDC4 Nonsense_Mutation p.E182* 0.17 TCGA-AC-A23H-01 12 100706413 100706413 C A SCYL2 Missense_Mutation p.F278L 0.14 tolerated(0.08) benign(0.225) TCGA-AC-A23H-01 12 100774504 100774504 G C SLC17A8 Missense_Mutation p.E43Q 0.16 tolerated(0.53) benign(0.302) TCGA-AC-A23H-01 12 101493408 101493408 G C ANO4 Missense_Mutation p.E652Q 0.34 tolerated(0.16) benign(0.005) TCGA-AC-A23H-01 12 101720912 101720912 C G UTP20 Missense_Mutation p.S1032C 0.09 deleterious(0.03) probably_damaging(0.954) TCGA-AC-A23H-01 12 102113929 102113929 T G CHPT1 Missense_Mutation p.I226S 0.17 tolerated(0.13) benign(0.206) TCGA-AC-A23H-01 12 102591446 102591446 C T PMCH Missense_Mutation p.D35N 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 12 104031957 104031957 G C STAB2 Missense_Mutation p.K291N 0.28 tolerated(1) benign(0.002) TCGA-AC-A23H-01 12 104083696 104083696 G A STAB2 Missense_Mutation p.E1040K 0.16 tolerated(0.4) benign(0.026) TCGA-AC-A23H-01 12 104092880 104092880 G A STAB2 Missense_Mutation p.D1197N 0.20 tolerated(0.4) benign(0.094) TCGA-AC-A23H-01 12 104097018 104097018 G C STAB2 Missense_Mutation p.K1269N 0.18 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 104190689 104190689 G C NT5DC3 Missense_Mutation p.L246V 0.21 tolerated(0.14) probably_damaging(0.967) TCGA-AC-A23H-01 12 104326177 104326177 C T HSP90B1 Missense_Mutation p.S92L 0.17 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 12 104480763 104480763 C G HCFC2 Nonsense_Mutation p.S401* 0.38 TCGA-AC-A23H-01 12 104513459 104513459 C G NFYB 3'UTR 0.21 TCGA-AC-A23H-01 12 105150759 105150759 G C CHST11 Missense_Mutation p.Q79H 0.47 deleterious(0.02) probably_damaging(0.927) TCGA-AC-A23H-01 12 105515925 105515925 C T KIAA1033 Missense_Mutation p.S232L 0.21 tolerated(0.16) benign(0.156) TCGA-AC-A23H-01 12 105600976 105600976 C T APPL2 Missense_Mutation p.E168K 0.12 deleterious(0.01) benign(0.14) TCGA-AC-A23H-01 12 106464648 106464648 G C NUAK1 Missense_Mutation p.L246V 0.15 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 106633506 106633506 C G CKAP4 Missense_Mutation p.E369Q 0.19 tolerated(0.1) benign(0.14) TCGA-AC-A23H-01 12 106772132 106772132 G A POLR3B Missense_Mutation p.R195K 0.12 tolerated(1) benign(0.002) TCGA-AC-A23H-01 12 109041232 109041232 G C CORO1C Missense_Mutation p.Q458E 0.12 deleterious(0.03) benign(0.213) TCGA-AC-A23H-01 12 109055908 109055908 G A CORO1C Silent p.L115L 0.15 TCGA-AC-A23H-01 12 109181618 109181618 C T SSH1 3'UTR 0.16 TCGA-AC-A23H-01 12 109844660 109844660 G C MYO1H Missense_Mutation p.E328Q 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-AC-A23H-01 12 109882270 109882270 G C MYO1H Missense_Mutation p.E961Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 109937548 109937548 C T UBE3B Nonsense_Mutation p.Q351* 0.27 TCGA-AC-A23H-01 12 110181910 110181910 C T FAM222A 5'UTR 0.33 TCGA-AC-A23H-01 12 110340998 110340998 C T TCHP Missense_Mutation p.S56F 0.15 deleterious(0) possibly_damaging(0.838) TCGA-AC-A23H-01 12 110426824 110426824 C T GIT2 Missense_Mutation p.V117I 0.18 tolerated(0.15) probably_damaging(0.999) TCGA-AC-A23H-01 12 110570413 110570413 C G IFT81 Missense_Mutation p.S164C 0.24 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 12 110643466 110643466 G C IFT81 Missense_Mutation p.E595Q 0.11 tolerated(0.06) benign(0.429) TCGA-AC-A23H-01 12 110656194 110656194 G C IFT81 3'UTR 0.43 TCGA-AC-A23H-01 12 110787811 110787811 G A ATP2A2 3'Flank 0.33 TCGA-AC-A23H-01 12 110813984 110813984 C T ANAPC7 Silent p.L499L 0.19 TCGA-AC-A23H-01 12 110940109 110940109 G C RAD9B 5'UTR 0.24 TCGA-AC-A23H-01 12 111923576 111923576 G A ATXN2 Nonsense_Mutation p.Q960* 0.15 TCGA-AC-A23H-01 12 111990111 111990111 C G ATXN2 Missense_Mutation p.D342H 0.22 probably_damaging(1) TCGA-AC-A23H-01 12 112621040 112621040 G A HECTD4 Nonsense_Mutation p.R3458* 0.16 TCGA-AC-A23H-01 12 112666453 112666453 C G HECTD4 Missense_Mutation p.E2082Q 0.16 probably_damaging(0.909) TCGA-AC-A23H-01 12 112685976 112685976 C T HECTD4 Splice_Site p.X1236_splice 0.11 TCGA-AC-A23H-01 12 112720942 112720942 G C HECTD4 Missense_Mutation p.I356M 0.15 probably_damaging(0.962) TCGA-AC-A23H-01 12 113416472 113416472 T C OAS2 Missense_Mutation p.I20T 0.15 deleterious(0) possibly_damaging(0.844) TCGA-AC-A23H-01 12 113433195 113433195 C T OAS2 Silent p.F181F 0.59 TCGA-AC-A23H-01 12 113433244 113433244 G A OAS2 Missense_Mutation p.D198N 0.13 tolerated(0.56) benign(0.346) TCGA-AC-A23H-01 12 113544914 113544914 C G RASAL1 Missense_Mutation p.D550H 0.16 tolerated(0.05) benign(0.059) TCGA-AC-A23H-01 12 113645561 113645561 C G IQCD Missense_Mutation p.Q137H 0.21 tolerated(0.27) benign(0.015) TCGA-AC-A23H-01 12 113645638 113645638 C G IQCD Missense_Mutation p.E112Q 0.28 tolerated(0.19) benign(0.209) TCGA-AC-A23H-01 12 113867090 113867090 C T SDSL Nonsense_Mutation p.Q114* 0.59 TCGA-AC-A23H-01 12 11507489 11507489 C G PRB1 Splice_Site p.X22_splice 0.20 TCGA-AC-A23H-01 12 116421319 116421319 C A MED13L Missense_Mutation p.D1520Y 0.20 deleterious(0) unknown(0) TCGA-AC-A23H-01 12 117698390 117698390 C T NOS1 Silent p.L749L 0.18 TCGA-AC-A23H-01 12 117768172 117768172 C A NOS1 Missense_Mutation p.D235Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-AC-A23H-01 12 117768590 117768590 G A NOS1 Silent p.L95L 0.19 TCGA-AC-A23H-01 12 117962947 117962947 C G KSR2 Silent p.R643R 0.23 TCGA-AC-A23H-01 12 120151478 120151478 G A CIT Intron 0.22 TCGA-AC-A23H-01 12 120189920 120189920 G A CIT Missense_Mutation p.R947C 0.19 deleterious(0.02) possibly_damaging(0.517) TCGA-AC-A23H-01 12 120574396 120574396 G T GCN1L1 Silent p.I2306I 0.11 TCGA-AC-A23H-01 12 120600722 120600722 G A GCN1L1 Missense_Mutation p.P698S 0.38 benign(0.334) TCGA-AC-A23H-01 12 120634635 120634635 C T RPLP0 Missense_Mutation p.E299K 0.18 tolerated(0.45) possibly_damaging(0.621) TCGA-AC-A23H-01 12 120876255 120876255 G A AL021546.6 Silent p.L36L 0.17 TCGA-AC-A23H-01 12 120897761 120897761 G C GATC Nonstop_Mutation p.*137Sext*16 0.15 TCGA-AC-A23H-01 12 120935920 120935920 G A DYNLL1 Silent p.G59G 0.20 TCGA-AC-A23H-01 12 120972697 120972697 C T RNF10 Missense_Mutation p.S28L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-AC-A23H-01 12 120995234 120995234 C T RNF10 Silent p.I265I 0.18 TCGA-AC-A23H-01 12 121204081 121204081 C T SPPL3 Silent p.T356T 0.20 TCGA-AC-A23H-01 12 121471506 121471506 C G OASL Missense_Mutation p.R80T 0.12 tolerated(0.26) benign(0) TCGA-AC-A23H-01 12 121476654 121476654 C G OASL Missense_Mutation p.E41Q 0.38 tolerated(0.25) benign(0.098) TCGA-AC-A23H-01 12 121686436 121686436 G C CAMKK2 Silent p.V475V 0.34 TCGA-AC-A23H-01 12 121693406 121693406 G A CAMKK2 Missense_Mutation p.S285F 0.14 deleterious(0) possibly_damaging(0.863) TCGA-AC-A23H-01 12 121858422 121858422 G C RNF34 Missense_Mutation p.D258H 0.19 deleterious(0) probably_damaging(0.966) TCGA-AC-A23H-01 12 122268010 122268010 G A SETD1B Silent p.Q1879Q 0.14 TCGA-AC-A23H-01 12 122748164 122748164 C T VPS33A Missense_Mutation p.R84K 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-AC-A23H-01 12 122757568 122757568 C G CLIP1 Missense_Mutation p.E1391Q 0.21 deleterious(0) probably_damaging(0.985) TCGA-AC-A23H-01 12 122763577 122763577 C T CLIP1 Missense_Mutation p.E1255K 0.18 deleterious(0.02) probably_damaging(0.977) TCGA-AC-A23H-01 12 122837295 122837295 G C CLIP1 Nonsense_Mutation p.S449* 0.20 TCGA-AC-A23H-01 12 122862453 122862453 G C CLIP1 Nonsense_Mutation p.S47* 0.21 TCGA-AC-A23H-01 12 123001897 123001897 C G RSRC2 Missense_Mutation p.R160T 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-AC-A23H-01 12 123186991 123186991 G C HCAR2 Silent p.L280L 0.13 TCGA-AC-A23H-01 12 123187336 123187336 C T HCAR2 Silent p.K165K 0.14 TCGA-AC-A23H-01 12 123805113 123805113 G C SBNO1 Missense_Mutation p.Q845E 0.56 tolerated(0.62) benign(0.035) TCGA-AC-A23H-01 12 123806117 123806117 G T SBNO1 Missense_Mutation p.P763Q 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-AC-A23H-01 12 123888131 123888131 G T SETD8 Missense_Mutation p.R203S 0.21 deleterious(0.02) benign(0.052) TCGA-AC-A23H-01 12 124156155 124156155 G T TCTN2 Nonsense_Mutation p.E62* 0.15 TCGA-AC-A23H-01 12 124189164 124189164 C T TCTN2 Silent p.I566I 0.19 TCGA-AC-A23H-01 12 124270443 124270443 G C DNAH10 Missense_Mutation p.E400Q 0.18 benign(0.093) TCGA-AC-A23H-01 12 124398988 124398988 G A DNAH10 Missense_Mutation p.D3371N 0.13 benign(0.001) TCGA-AC-A23H-01 12 124415059 124415059 C T DNAH10 Silent p.F4123F 0.16 TCGA-AC-A23H-01 12 125397236 125397236 G C UBC Missense_Mutation p.S361C 0.19 deleterious(0) possibly_damaging(0.812) TCGA-AC-A23H-01 12 125453191 125453191 C T DHX37 Missense_Mutation p.E433K 0.24 deleterious(0.04) benign(0.065) TCGA-AC-A23H-01 12 12618566 12618566 G A LOH12CR1 Silent p.V149V 0.20 TCGA-AC-A23H-01 12 129299502 129299502 G A SLC15A4 Silent p.V220V 0.17 TCGA-AC-A23H-01 12 129558265 129558265 C T TMEM132D 3'UTR 0.22 TCGA-AC-A23H-01 12 130827159 130827159 G C PIWIL1 Missense_Mutation p.R8T 0.17 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 12 13102533 13102533 G C GPRC5D Silent p.L262L 0.09 TCGA-AC-A23H-01 12 131471728 131471728 G A GPR133 Silent p.P193P 0.39 TCGA-AC-A23H-01 12 132428264 132428264 C T PUS1 3'UTR 0.25 TCGA-AC-A23H-01 12 132625197 132625197 G C DDX51 Silent p.L508L 0.19 TCGA-AC-A23H-01 12 133360707 133360707 G A GOLGA3 Intron 0.64 TCGA-AC-A23H-01 12 133393366 133393366 C T GOLGA3 Missense_Mutation p.E56K 0.29 tolerated_low_confidence(0.42) benign(0.106) TCGA-AC-A23H-01 12 14765918 14765918 C A GUCY2C 3'UTR 0.24 TCGA-AC-A23H-01 12 15652375 15652375 G T PTPRO Splice_Site p.X170_splice 0.24 TCGA-AC-A23H-01 12 19501417 19501417 G C PLEKHA5 Missense_Mutation p.E995Q 0.38 deleterious(0.02) possibly_damaging(0.793) TCGA-AC-A23H-01 12 19512388 19512388 G C PLEKHA5 Missense_Mutation p.E1131Q 0.40 tolerated(0.26) possibly_damaging(0.675) TCGA-AC-A23H-01 12 20787910 20787910 G A PDE3A Missense_Mutation p.D641N 0.35 deleterious(0.04) benign(0.067) TCGA-AC-A23H-01 12 20807049 20807049 G T PDE3A Nonsense_Mutation p.E1032* 0.45 TCGA-AC-A23H-01 12 20874912 20874912 T C SLCO1C1 Missense_Mutation p.F317S 0.35 tolerated(0.16) possibly_damaging(0.475) TCGA-AC-A23H-01 12 21450344 21450344 G C SLCO1A2 Missense_Mutation p.L357V 0.22 tolerated(0.29) probably_damaging(0.927) TCGA-AC-A23H-01 12 21531360 21531360 G C IAPP Nonstop_Mutation p.*90Yext*4 0.28 TCGA-AC-A23H-01 12 248014 248014 G T IQSEC3 Missense_Mutation p.Q495H 0.33 tolerated(0.18) benign(0.176) TCGA-AC-A23H-01 12 25297459 25297459 G A CASC1 Missense_Mutation p.S281F 0.31 tolerated(0.06) possibly_damaging(0.493) TCGA-AC-A23H-01 12 26275892 26275892 G C BHLHE41 Missense_Mutation p.L186V 0.55 tolerated(0.43) benign(0.005) TCGA-AC-A23H-01 12 26752196 26752196 T C ITPR2 Missense_Mutation p.H1295R 0.43 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 12 27181417 27181417 G A MED21 3'UTR 0.38 TCGA-AC-A23H-01 12 27844717 27844717 G C PPFIBP1 Missense_Mutation p.L913F 0.38 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 12 28702157 28702157 C T CCDC91 3'UTR 0.11 TCGA-AC-A23H-01 12 29524582 29524582 C T ERGIC2 5'UTR 0.13 TCGA-AC-A23H-01 12 29604478 29604478 T G OVCH1 Missense_Mutation p.E852A 0.42 deleterious(0.04) benign(0.254) TCGA-AC-A23H-01 12 30873795 30873795 G A CAPRIN2 Nonsense_Mutation p.Q700* 0.15 TCGA-AC-A23H-01 12 31254835 31254835 C A DDX11 Missense_Mutation p.F707L 0.17 tolerated(0.11) possibly_damaging(0.717) TCGA-AC-A23H-01 12 31257050 31257050 G A DDX11 3'UTR 0.38 TCGA-AC-A23H-01 12 31613157 31613157 C T DENND5B Missense_Mutation p.D355N 0.17 tolerated(0.08) probably_damaging(0.944) TCGA-AC-A23H-01 12 32137007 32137007 G A KIAA1551 Missense_Mutation p.E1040K 0.25 tolerated(0.12) possibly_damaging(0.756) TCGA-AC-A23H-01 12 32458802 32458802 G C BICD1 Missense_Mutation p.E251Q 0.11 deleterious(0.01) probably_damaging(0.923) TCGA-AC-A23H-01 12 32955377 32955377 C T PKP2 Silent p.L753L 0.24 TCGA-AC-A23H-01 12 38714319 38714319 G T ALG10B Missense_Mutation p.M242I 0.27 tolerated(0.45) benign(0.004) TCGA-AC-A23H-01 12 39711890 39711890 G A KIF21A Missense_Mutation p.S1298L 0.28 tolerated(0.27) benign(0.027) TCGA-AC-A23H-01 12 40681225 40681225 C G LRRK2 Nonsense_Mutation p.S858* 0.17 TCGA-AC-A23H-01 12 40761505 40761505 G C LRRK2 Missense_Mutation p.E2508Q 0.26 tolerated(0.53) benign(0.147) TCGA-AC-A23H-01 12 41422923 41422923 C T CNTN1 Missense_Mutation p.S961F 0.22 tolerated(0.71) benign(0.006) TCGA-AC-A23H-01 12 43822244 43822244 C T ADAMTS20 Missense_Mutation p.E1249K 0.21 tolerated(0.09) benign(0.272) TCGA-AC-A23H-01 12 43846146 43846146 C T ADAMTS20 Silent p.K670K 0.22 TCGA-AC-A23H-01 12 44148574 44148574 G C PUS7L Missense_Mutation p.P159A 0.49 tolerated(0.21) benign(0.001) TCGA-AC-A23H-01 12 45173749 45173749 G C NELL2 Nonsense_Mutation p.S181* 0.25 TCGA-AC-A23H-01 12 45568270 45568270 C T PLEKHA8P1 RNA 0.24 TCGA-AC-A23H-01 12 45761484 45761484 C T ANO6 Missense_Mutation p.H359Y 0.32 tolerated(0.07) benign(0.407) TCGA-AC-A23H-01 12 46231193 46231193 G C ARID2 Missense_Mutation p.K371N 0.15 tolerated(0.08) probably_damaging(0.98) TCGA-AC-A23H-01 12 4626232 4626232 G C C12orf4 Nonsense_Mutation p.S386* 0.28 TCGA-AC-A23H-01 12 46633645 46633645 G C SLC38A1 5'UTR 0.11 TCGA-AC-A23H-01 12 46758433 46758433 C G SLC38A2 Silent p.L233L 0.30 TCGA-AC-A23H-01 12 47173590 47173590 G A SLC38A4 Missense_Mutation p.L211F 0.11 deleterious(0.03) possibly_damaging(0.844) TCGA-AC-A23H-01 12 47471774 47471774 C A AMIGO2 Nonsense_Mutation p.E338* 0.17 TCGA-AC-A23H-01 12 48142249 48142249 G A RAPGEF3 Missense_Mutation p.H411Y 0.19 tolerated(0.3) benign(0.012) TCGA-AC-A23H-01 12 48177913 48177921 TCCACTTCT - HDAC7 In_Frame_Del p.E958_E960del 0.31 TCGA-AC-A23H-01 12 48190855 48190855 G C HDAC7 Silent p.L216L 0.59 TCGA-AC-A23H-01 12 48370913 48370913 G T COL2A1 Nonsense_Mutation p.S1100* 0.22 TCGA-AC-A23H-01 12 48528606 48528606 C T PFKM Silent p.L318L 0.33 TCGA-AC-A23H-01 12 48737056 48737056 C G ZNF641 Missense_Mutation p.Q339H 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-AC-A23H-01 12 4874619 4874619 C T GALNT8 Silent p.C556C 0.37 TCGA-AC-A23H-01 12 49073592 49073592 G A KANSL2 Silent p.V92V 0.20 TCGA-AC-A23H-01 12 49458909 49458909 C T RHEBL1 Missense_Mutation p.E177K 0.18 tolerated(0.54) benign(0.002) TCGA-AC-A23H-01 12 49580464 49580464 G C TUBA1A Missense_Mutation p.F52L 0.19 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 12 49582796 49582796 G A TUBA1A 5'UTR 0.22 TCGA-AC-A23H-01 12 49666927 49666927 G A TUBA1C Missense_Mutation p.E423K 0.21 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-AC-A23H-01 12 49998302 49998302 G C FAM186B Nonsense_Mutation p.S39* 0.19 TCGA-AC-A23H-01 12 50025642 50025642 G C PRPF40B Splice_Site p.X77_splice 0.21 TCGA-AC-A23H-01 12 50029197 50029197 G A PRPF40B Missense_Mutation p.E406K 0.39 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 12 50037942 50037942 G C PRPF40B Silent p.R882R 0.58 TCGA-AC-A23H-01 12 50045782 50045782 C T FMNL3 Missense_Mutation p.E513K 0.38 tolerated(0.82) probably_damaging(0.979) TCGA-AC-A23H-01 12 50155484 50155484 C T TMBIM6 Intron 0.15 TCGA-AC-A23H-01 12 50232728 50232728 C G BCDIN3D Missense_Mutation p.R102T 0.20 tolerated(0.47) benign(0.003) TCGA-AC-A23H-01 12 50367305 50367305 C G AQP6 Missense_Mutation p.L117V 0.42 tolerated(0.43) benign(0.033) TCGA-AC-A23H-01 12 50452736 50452736 G C ASIC1 Missense_Mutation p.E63Q 0.13 tolerated(0.11) benign(0.078) TCGA-AC-A23H-01 12 50484356 50484356 C A SMARCD1 Silent p.I372I 0.18 TCGA-AC-A23H-01 12 50528341 50528341 C A CERS5 Missense_Mutation p.L339F 0.40 tolerated(0.15) benign(0.043) TCGA-AC-A23H-01 12 50570855 50570855 C T LIMA1 Missense_Mutation p.E759K 0.14 deleterious(0.02) benign(0.002) TCGA-AC-A23H-01 12 50822769 50822769 C G LARP4 Missense_Mutation p.S73C 0.20 deleterious(0.01) probably_damaging(0.926) TCGA-AC-A23H-01 12 51053974 51053974 C G DIP2B Intron 0.21 TCGA-AC-A23H-01 12 51100351 51100351 G T DIP2B Missense_Mutation p.D813Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 12 51138593 51138593 G C DIP2B Missense_Mutation p.D1568H 0.20 tolerated(0.07) probably_damaging(0.996) TCGA-AC-A23H-01 12 51636466 51636466 C T DAZAP2 3'UTR 0.22 TCGA-AC-A23H-01 12 51770982 51770982 C G GALNT6 Missense_Mutation p.E221Q 0.59 tolerated(0.23) benign(0.291) TCGA-AC-A23H-01 12 51890848 51890848 C G SLC4A8 Silent p.L1007L 0.16 TCGA-AC-A23H-01 12 52056722 52056722 G A SCN8A Missense_Mutation p.D41N 0.23 tolerated(0.26) benign(0.011) TCGA-AC-A23H-01 12 52370122 52370122 G T ACVR1B Nonsense_Mutation p.E115* 0.18 TCGA-AC-A23H-01 12 52754634 52754634 C G KRT85 3'UTR 0.31 TCGA-AC-A23H-01 12 52789544 52789544 G A KRT82 Silent p.I440I 0.11 TCGA-AC-A23H-01 12 52822460 52822460 G C KRT75 Missense_Mutation p.S368C 0.18 deleterious(0) probably_damaging(0.964) TCGA-AC-A23H-01 12 52827016 52827016 C T KRT75 Silent p.Q173Q 0.21 TCGA-AC-A23H-01 12 52862993 52862993 G A KRT6C Silent p.S516S 0.59 TCGA-AC-A23H-01 12 52910956 52910956 C T KRT5 Missense_Mutation p.E385K 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 12 52967144 52967144 C G KRT74 Missense_Mutation p.E140Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 12 53467114 53467114 C T SPRYD3 Missense_Mutation p.E217K 0.21 deleterious(0.01) benign(0.025) TCGA-AC-A23H-01 12 53499384 53499384 C T SOAT2 Silent p.I105I 0.14 TCGA-AC-A23H-01 12 53681819 53681819 G A ESPL1 Missense_Mutation p.E1414K 0.19 tolerated(0.47) benign(0.002) TCGA-AC-A23H-01 12 53854845 53854845 C G PCBP2 Nonsense_Mutation p.S141* 0.22 TCGA-AC-A23H-01 12 54383179 54383179 G A HOXC10 Missense_Mutation p.M326I 0.49 deleterious(0.01) benign(0.168) TCGA-AC-A23H-01 12 54394137 54394137 C T HOXC9 Silent p.F55F 0.34 TCGA-AC-A23H-01 12 54794685 54794685 C G ITGA5 Missense_Mutation p.R863T 0.23 tolerated(0.34) benign(0.111) TCGA-AC-A23H-01 12 55641280 55641280 C T OR6C74 Missense_Mutation p.S70L 0.20 tolerated_low_confidence(0.08) benign(0.001) TCGA-AC-A23H-01 12 55641588 55641588 G C OR6C74 Missense_Mutation p.D173H 0.23 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AC-A23H-01 12 55641628 55641628 C G OR6C74 Missense_Mutation p.S186C 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 56119990 56119990 G A CD63 Missense_Mutation p.S161L 0.21 tolerated(0.22) benign(0.002) TCGA-AC-A23H-01 12 56222181 56222181 C T DNAJC14 Missense_Mutation p.E88K 0.39 deleterious_low_confidence(0.02) benign(0.008) TCGA-AC-A23H-01 12 56493763 56493763 C A ERBB3 Missense_Mutation p.L1027M 0.16 tolerated(0.11) benign(0.161) TCGA-AC-A23H-01 12 56498399 56498399 C G PA2G4 5'UTR 0.21 TCGA-AC-A23H-01 12 56524862 56524862 G A ESYT1 Silent p.Q202Q 0.19 TCGA-AC-A23H-01 12 56551642 56551642 C G MYL6B 3'UTR 0.30 TCGA-AC-A23H-01 12 56558178 56558178 G A SMARCC2 Silent p.L1159L 0.18 TCGA-AC-A23H-01 12 56601468 56601468 C T RNF41 Silent p.Q188Q 0.13 TCGA-AC-A23H-01 12 56647896 56647896 G A ANKRD52 Silent p.L287L 0.15 TCGA-AC-A23H-01 12 56679748 56679748 G A CS Silent p.F51F 0.15 TCGA-AC-A23H-01 12 56708926 56708926 G C CNPY2 Missense_Mutation p.L26V 0.17 tolerated(0.19) benign(0.068) TCGA-AC-A23H-01 12 56732974 56732974 C T IL23A Missense_Mutation p.P49L 0.41 tolerated(0.31) benign(0.005) TCGA-AC-A23H-01 12 56749294 56749294 T C STAT2 Missense_Mutation p.E135G 0.62 tolerated(0.13) benign(0.044) TCGA-AC-A23H-01 12 56865230 56865230 C T GLS2 3'UTR 0.18 TCGA-AC-A23H-01 12 56993873 56993873 C T BAZ2A Missense_Mutation p.E1636K 0.23 deleterious(0.01) probably_damaging(0.915) TCGA-AC-A23H-01 12 57081820 57081820 G A PTGES3 5'UTR 0.29 TCGA-AC-A23H-01 12 57113180 57113180 G C NACA Intron 0.43 TCGA-AC-A23H-01 12 57178647 57178647 C T HSD17B6 Nonsense_Mutation p.Q195* 0.38 TCGA-AC-A23H-01 12 57689238 57689238 G C R3HDM2 Missense_Mutation p.Q252E 0.21 deleterious(0) benign(0.02) TCGA-AC-A23H-01 12 57828576 57828576 C T INHBC 5'UTR 0.18 TCGA-AC-A23H-01 12 57857801 57857801 C A GLI1 Missense_Mutation p.F40L 0.16 tolerated(0.38) probably_damaging(0.977) TCGA-AC-A23H-01 12 57866283 57866283 C T ARHGAP9 3'UTR 0.15 TCGA-AC-A23H-01 12 57869715 57869715 C T ARHGAP9 Splice_Site p.X405_splice 0.17 TCGA-AC-A23H-01 12 57870181 57870181 C T ARHGAP9 Missense_Mutation p.R361Q 0.17 deleterious(0) possibly_damaging(0.698) TCGA-AC-A23H-01 12 57881979 57881979 G C MARS Missense_Mutation p.E36Q 0.32 tolerated(0.11) possibly_damaging(0.638) TCGA-AC-A23H-01 12 57884027 57884027 G A MARS Silent p.L176L 0.18 TCGA-AC-A23H-01 12 57908614 57908614 C G MARS Missense_Mutation p.H693Q 0.15 tolerated(0.06) benign(0.103) TCGA-AC-A23H-01 12 57987805 57987805 C G PIP4K2C Intron 0.14 TCGA-AC-A23H-01 12 58007363 58007363 G A ARHGEF25 Intron 0.18 TCGA-AC-A23H-01 12 58126638 58126638 G C AGAP2 Silent p.V558V 0.21 TCGA-AC-A23H-01 12 58174455 58174455 C G METTL21B 3'UTR 0.14 TCGA-AC-A23H-01 12 6031933 6031933 G T ANO2 Missense_Mutation p.S16R 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.504) TCGA-AC-A23H-01 12 62104037 62104037 A G FAM19A2 3'UTR 0.19 TCGA-AC-A23H-01 12 62794993 62794993 G A USP15 Missense_Mutation p.D901N 0.34 tolerated(1) benign(0.085) TCGA-AC-A23H-01 12 63042067 63042067 C G PPM1H 3'UTR 0.25 TCGA-AC-A23H-01 12 64015112 64015112 G C DPY19L2 Nonsense_Mutation p.S320* 0.18 TCGA-AC-A23H-01 12 64238584 64238584 G A SRGAP1 5'UTR 0.19 TCGA-AC-A23H-01 12 64377747 64377747 G A SRGAP1 Missense_Mutation p.E30K 0.24 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 12 64377861 64377861 G C SRGAP1 Missense_Mutation p.E68Q 0.18 deleterious(0) probably_damaging(0.962) TCGA-AC-A23H-01 12 64502761 64502761 G C SRGAP1 Silent p.L621L 0.22 TCGA-AC-A23H-01 12 6457910 6457910 C G SCNN1A Missense_Mutation p.E597Q 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 12 6457964 6457964 C T SCNN1A Missense_Mutation p.G579R 0.39 deleterious(0.05) probably_damaging(0.991) TCGA-AC-A23H-01 12 6483783 6483783 C T SCNN1A Missense_Mutation p.R115Q 0.17 tolerated(0.18) benign(0.41) TCGA-AC-A23H-01 12 6497587 6497587 C G LTBR Missense_Mutation p.L231V 0.31 tolerated(0.08) benign(0.226) TCGA-AC-A23H-01 12 65471614 65471614 G C WIF1 Missense_Mutation p.F103L 0.10 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 12 666818 666818 G T B4GALNT3 Nonsense_Mutation p.E809* 0.34 TCGA-AC-A23H-01 12 6679760 6679760 C G CHD4 3'UTR 0.28 TCGA-AC-A23H-01 12 6692457 6692457 C G CHD4 Missense_Mutation p.E1323Q 0.25 deleterious(0.03) probably_damaging(0.913) TCGA-AC-A23H-01 12 67688931 67688931 G C CAND1 Missense_Mutation p.L162F 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-AC-A23H-01 12 68707261 68707261 G A MDM1 Nonsense_Mutation p.Q561* 0.15 TCGA-AC-A23H-01 12 68709007 68709007 G A MDM1 Missense_Mutation p.S407F 0.19 deleterious(0.03) benign(0.354) TCGA-AC-A23H-01 12 68719275 68719275 C A MDM1 Missense_Mutation p.R193S 0.15 tolerated(0.77) benign(0.086) TCGA-AC-A23H-01 12 68720395 68720395 G T MDM1 Intron 0.14 TCGA-AC-A23H-01 12 68720625 68720625 G A MDM1 Nonsense_Mutation p.Q104* 0.17 TCGA-AC-A23H-01 12 69051005 69051005 C T RAP1B Intron 0.19 TCGA-AC-A23H-01 12 6979278 6979278 G A TPI1 Silent p.Q240Q 0.32 TCGA-AC-A23H-01 12 69987312 69987312 G A CCT2 Missense_Mutation p.E301K 0.19 deleterious(0) possibly_damaging(0.891) TCGA-AC-A23H-01 12 70049404 70049404 G A BEST3 Silent p.S430S 0.18 TCGA-AC-A23H-01 12 70072550 70072550 C G BEST3 Missense_Mutation p.R202T 0.28 deleterious(0) benign(0.374) TCGA-AC-A23H-01 12 7048312 7048312 C G ATN1 Missense_Mutation p.H1062Q 0.27 possibly_damaging(0.898) TCGA-AC-A23H-01 12 70704703 70704703 G T CNOT2 Missense_Mutation p.R26I 0.15 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-AC-A23H-01 12 70946603 70946603 G C PTPRB Missense_Mutation p.Q1781E 0.14 tolerated(0.24) benign(0.008) TCGA-AC-A23H-01 12 70970342 70970342 C G PTPRB Missense_Mutation p.D888H 0.15 deleterious(0.01) probably_damaging(0.952) TCGA-AC-A23H-01 12 72175817 72175817 A G RAB21 Missense_Mutation p.K133R 0.64 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 72680657 72680657 C G TRHDE Missense_Mutation p.L326V 0.16 tolerated(0.19) benign(0.179) TCGA-AC-A23H-01 12 7301655 7301655 G A CLSTN3 Silent p.L645L 0.38 TCGA-AC-A23H-01 12 7525937 7525937 C T CD163L1 Missense_Mutation p.E1237K 0.31 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 12 75685560 75685560 C T CAPS2 Missense_Mutation p.E421K 0.20 tolerated(0.13) probably_damaging(0.954) TCGA-AC-A23H-01 12 75816874 75816874 G C GLIPR1L2 Intron 0.19 TCGA-AC-A23H-01 12 7586195 7586195 C A CD163L1 Missense_Mutation p.D74Y 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A23H-01 12 76442152 76442152 G A NAP1L1 3'UTR 0.20 TCGA-AC-A23H-01 12 76740142 76740142 G C BBS10 Silent p.L541L 0.23 TCGA-AC-A23H-01 12 76772307 76772307 C G OSBPL8 Missense_Mutation p.E552Q 0.39 deleterious(0.01) benign(0.403) TCGA-AC-A23H-01 12 77157979 77157979 C T ZDHHC17 5'UTR 0.67 TCGA-AC-A23H-01 12 77254189 77254189 G A CSRP2 Nonsense_Mutation p.Q96* 0.20 TCGA-AC-A23H-01 12 78400972 78400972 G T NAV3 Nonsense_Mutation p.E552* 0.17 TCGA-AC-A23H-01 12 7869636 7869636 G C DPPA3 Missense_Mutation p.R148T 0.25 tolerated(0.12) benign(0.05) TCGA-AC-A23H-01 12 79685893 79685893 G T SYT1 Missense_Mutation p.D153Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 12 80214596 80214596 C T PPP1R12A Missense_Mutation p.E358K 0.10 tolerated(0.09) probably_damaging(0.991) TCGA-AC-A23H-01 12 80699471 80699471 G C OTOGL Missense_Mutation p.G1101A 0.17 tolerated(1) probably_damaging(1) TCGA-AC-A23H-01 12 80730309 80730309 C G OTOGL Missense_Mutation p.H1564D 0.24 deleterious(0.03) probably_damaging(0.98) TCGA-AC-A23H-01 12 80771627 80771627 G A OTOGL Splice_Site p.X2279_splice 0.14 TCGA-AC-A23H-01 12 80889016 80889016 C T PTPRQ Missense_Mutation p.S579L 0.38 deleterious(0) possibly_damaging(0.46) TCGA-AC-A23H-01 12 81627231 81627231 C G ACSS3 Missense_Mutation p.S567C 0.16 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 12 81647431 81647431 C T ACSS3 Silent p.V659V 0.25 TCGA-AC-A23H-01 12 81777896 81777896 C G PPFIA2 Missense_Mutation p.R297P 0.21 deleterious(0.02) possibly_damaging(0.872) TCGA-AC-A23H-01 12 81839383 81839383 G C PPFIA2 Silent p.L174L 0.21 TCGA-AC-A23H-01 12 82792604 82792604 C G METTL25 Missense_Mutation p.L188V 0.26 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 8628773 8628773 C T CLEC6A Missense_Mutation p.S141L 0.39 deleterious(0.01) benign(0.298) TCGA-AC-A23H-01 12 88478577 88478577 G C CEP290 Nonsense_Mutation p.S1497* 0.22 TCGA-AC-A23H-01 12 88582679 88582679 G C TMTC3 Missense_Mutation p.E498Q 0.12 tolerated(0.09) benign(0.382) TCGA-AC-A23H-01 12 88899002 88899002 C G KITLG Missense_Mutation p.E265Q 0.38 tolerated(0.81) benign(0.192) TCGA-AC-A23H-01 12 89818982 89818982 C T POC1B Missense_Mutation p.D430N 0.25 tolerated(0.73) benign(0.001) TCGA-AC-A23H-01 12 89864264 89864264 G A POC1B Silent p.S228S 0.28 TCGA-AC-A23H-01 12 89919025 89919025 C G POC1B Intron 0.12 TCGA-AC-A23H-01 12 91365729 91365729 C T EPYC Missense_Mutation p.E184K 0.11 tolerated(0.08) benign(0.321) TCGA-AC-A23H-01 12 91449308 91449308 C G KERA Missense_Mutation p.D251H 0.60 deleterious(0) probably_damaging(0.938) TCGA-AC-A23H-01 12 91539832 91539832 G A DCN 3'UTR 0.19 TCGA-AC-A23H-01 12 91540003 91540003 G C DCN Missense_Mutation p.I304M 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 12 93164109 93164109 G T PLEKHG7 3'UTR 0.24 TCGA-AC-A23H-01 12 93171721 93171721 C G EEA1 Missense_Mutation p.E1297Q 0.13 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 12 93220059 93220059 C T EEA1 Silent p.L469L 0.19 TCGA-AC-A23H-01 12 93226290 93226290 G C EEA1 Missense_Mutation p.Q418E 0.10 deleterious(0.03) benign(0.053) TCGA-AC-A23H-01 12 936424 936424 G C WNK1 Silent p.V383V 0.28 TCGA-AC-A23H-01 12 93788440 93788440 G A NUDT4 Missense_Mutation p.G52E 0.18 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 12 939177 939177 G C WNK1 Missense_Mutation p.E388Q 0.37 deleterious(0) unknown(0) TCGA-AC-A23H-01 12 94772680 94772680 C G CCDC41 Missense_Mutation p.E230Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 12 94965322 94965322 C G TMCC3 Missense_Mutation p.K441N 0.20 deleterious(0) benign(0.34) TCGA-AC-A23H-01 12 95424311 95424311 G C NR2C1 Intron 0.23 TCGA-AC-A23H-01 12 95475250 95475250 G A FGD6 3'UTR 0.52 TCGA-AC-A23H-01 12 95531432 95531432 C T FGD6 Missense_Mutation p.D954N 0.12 deleterious(0.01) possibly_damaging(0.9) TCGA-AC-A23H-01 12 95604117 95604117 G C FGD6 Missense_Mutation p.P315A 0.29 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-AC-A23H-01 12 95645764 95645764 G A VEZT Missense_Mutation p.E29K 0.16 deleterious(0) probably_damaging(0.957) TCGA-AC-A23H-01 12 95689902 95689902 G A VEZT Missense_Mutation p.E567K 0.15 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 12 95694019 95694019 G T VEZT Missense_Mutation p.G637V 0.18 tolerated(0.09) benign(0.064) TCGA-AC-A23H-01 12 96284624 96284624 C T CCDC38 Missense_Mutation p.G286E 0.20 tolerated(0.9) benign(0.002) TCGA-AC-A23H-01 12 96356195 96356195 C T AMDHD1 Silent p.I292I 0.15 TCGA-AC-A23H-01 12 96370270 96370270 C G HAL Missense_Mutation p.W590C 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-AC-A23H-01 12 96384182 96384182 C T HAL Missense_Mutation p.D282N 0.35 tolerated(0.19) benign(0.101) TCGA-AC-A23H-01 12 96717855 96717855 G C CDK17 Missense_Mutation p.H52D 0.16 tolerated_low_confidence(0.63) benign(0.002) TCGA-AC-A23H-01 12 9747966 9747966 C T KLRB1 Silent p.Q194Q 0.34 TCGA-AC-A23H-01 12 9840572 9840572 C T CLEC2D Nonsense_Mutation p.Q83* 0.41 TCGA-AC-A23H-01 12 98995192 98995192 G A SLC25A3 Silent p.L325L 0.55 TCGA-AC-A23H-01 12 99007369 99007369 C G IKBIP Missense_Mutation p.M349I 0.15 tolerated(0.46) benign(0.003) TCGA-AC-A23H-01 12 99074100 99074100 C T APAF1 Missense_Mutation p.H656Y 0.32 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 13 103386801 103386801 G C CCDC168 Missense_Mutation p.Q787E 0.50 tolerated(0.63) benign(0.092) TCGA-AC-A23H-01 13 103388530 103388530 G A CCDC168 Silent p.F210F 0.67 TCGA-AC-A23H-01 13 103396623 103396623 A T LINC00283 RNA 0.12 TCGA-AC-A23H-01 13 103443633 103443633 C T KDELC1 Missense_Mutation p.D274N 0.25 tolerated(0.07) possibly_damaging(0.688) TCGA-AC-A23H-01 13 103449214 103449214 G C KDELC1 Missense_Mutation p.L110V 0.76 tolerated(0.11) benign(0.267) TCGA-AC-A23H-01 13 110827075 110827075 A T COL4A1 Missense_Mutation p.F1074I 0.42 possibly_damaging(0.906) TCGA-AC-A23H-01 13 111088619 111088619 G A COL4A2 Missense_Mutation p.D244N 0.52 benign(0.437) TCGA-AC-A23H-01 13 111290693 111290693 C A CARKD Missense_Mutation p.S333Y 0.23 deleterious_low_confidence(0) benign(0.403) TCGA-AC-A23H-01 13 111367939 111367939 G T ING1 Missense_Mutation p.G50V 0.51 tolerated_low_confidence(0.07) benign(0) TCGA-AC-A23H-01 13 113460601 113460601 C G ATP11A Missense_Mutation p.I109M 0.56 deleterious(0) possibly_damaging(0.9) TCGA-AC-A23H-01 13 113505389 113505389 G A ATP11A Silent p.L616L 0.44 TCGA-AC-A23H-01 13 113748923 113748923 G A MCF2L Missense_Mutation p.D1017N 0.30 deleterious(0.04) benign(0.085) TCGA-AC-A23H-01 13 113980315 113980315 C T GRTP1 Silent p.L218L 0.46 TCGA-AC-A23H-01 13 114285955 114285955 G C TFDP1 Missense_Mutation p.Q68H 0.27 deleterious(0.02) possibly_damaging(0.841) TCGA-AC-A23H-01 13 115090327 115090327 C T CHAMP1 Missense_Mutation p.A337V 0.48 tolerated(0.22) benign(0.217) TCGA-AC-A23H-01 13 20425978 20425978 C T ZMYM5 Missense_Mutation p.E115K 0.24 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-AC-A23H-01 13 21176024 21176024 G C IFT88 Missense_Mutation p.L340F 0.40 deleterious(0) possibly_damaging(0.614) TCGA-AC-A23H-01 13 21957099 21957099 C T ZDHHC20 Missense_Mutation p.E302K 0.18 deleterious(0.01) possibly_damaging(0.879) TCGA-AC-A23H-01 13 23777859 23777859 C G SGCG Missense_Mutation p.A9G 0.53 tolerated(0.13) benign(0.027) TCGA-AC-A23H-01 13 23853548 23853548 G A SGCG Missense_Mutation p.D146N 0.49 tolerated(0.22) benign(0.013) TCGA-AC-A23H-01 13 23904867 23904867 G A SACS Missense_Mutation p.S4383L 0.18 benign(0.046) TCGA-AC-A23H-01 13 23910337 23910337 C G SACS Missense_Mutation p.E2560Q 0.23 probably_damaging(0.992) TCGA-AC-A23H-01 13 24860454 24860454 C T SPATA13 Silent p.L802L 0.29 TCGA-AC-A23H-01 13 25000642 25000642 G A PARP4 Silent p.F1647F 0.44 TCGA-AC-A23H-01 13 25440294 25440294 G T RNF17 Missense_Mutation p.D1372Y 0.44 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 13 27216435 27216435 C - WASF3 Frame_Shift_Del p.R11Gfs*19 0.32 TCGA-AC-A23H-01 13 27241737 27241737 C G WASF3 Missense_Mutation p.P118A 0.42 deleterious(0) possibly_damaging(0.813) TCGA-AC-A23H-01 13 27250683 27250683 C T WASF3 Intron 0.43 TCGA-AC-A23H-01 13 27669743 27669743 C T USP12 Missense_Mutation p.E190K 0.49 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 13 28127463 28127463 C T LNX2 Missense_Mutation p.E554K 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A23H-01 13 28599022 28599022 G A FLT3 Missense_Mutation p.H756Y 0.20 tolerated(0.56) benign(0.212) TCGA-AC-A23H-01 13 28599069 28599069 G C FLT3 Nonsense_Mutation p.S740* 0.19 TCGA-AC-A23H-01 13 28971161 28971161 G C FLT1 Missense_Mutation p.I532M 0.21 tolerated(0.98) probably_damaging(0.932) TCGA-AC-A23H-01 13 29252209 29252209 G C POMP Missense_Mutation p.L132F 0.18 tolerated(0.05) possibly_damaging(0.467) TCGA-AC-A23H-01 13 29275561 29275561 C G SLC46A3 Intron 0.12 TCGA-AC-A23H-01 13 29599594 29599594 G A MTUS2 Silent p.Q263Q 0.48 TCGA-AC-A23H-01 13 29599939 29599939 C A MTUS2 Silent p.L378L 0.29 TCGA-AC-A23H-01 13 30857771 30857771 G C KATNAL1 Missense_Mutation p.I48M 0.56 tolerated(0.22) benign(0.019) TCGA-AC-A23H-01 13 31526900 31526900 G T TEX26 Nonsense_Mutation p.E84* 0.51 TCGA-AC-A23H-01 13 32884832 32884832 C G ZAR1L Missense_Mutation p.D231H 0.53 deleterious(0.02) probably_damaging(0.974) TCGA-AC-A23H-01 13 32910551 32910551 G C BRCA2 Missense_Mutation p.D687H 0.24 tolerated(0.06) possibly_damaging(0.891) TCGA-AC-A23H-01 13 32911589 32911589 G C BRCA2 Missense_Mutation p.D1033H 0.15 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 13 36229053 36229053 C G NBEA Missense_Mutation p.I2678M 0.27 tolerated(0.11) possibly_damaging(0.809) TCGA-AC-A23H-01 13 37569679 37569679 C T ALG5 Missense_Mutation p.E41K 0.27 tolerated(0.52) benign(0.013) TCGA-AC-A23H-01 13 37583935 37583935 G A SUPT20H Silent p.F738F 0.28 TCGA-AC-A23H-01 13 39425236 39425236 G A FREM2 Missense_Mutation p.D2245N 0.36 tolerated(0.19) benign(0.015) TCGA-AC-A23H-01 13 39452330 39452330 T C FREM2 Missense_Mutation p.Y2911H 0.10 tolerated(0.53) benign(0) TCGA-AC-A23H-01 13 41791309 41791309 G A MTRF1 Missense_Mutation p.S427L 0.47 tolerated(0.64) benign(0.092) TCGA-AC-A23H-01 13 41891017 41891017 C T NAA16 Silent p.L30L 0.22 TCGA-AC-A23H-01 13 41933013 41933013 G C NAA16 Missense_Mutation p.R442T 0.47 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 13 42461472 42461472 G C VWA8 Missense_Mutation p.S226C 0.38 deleterious(0.04) possibly_damaging(0.617) TCGA-AC-A23H-01 13 42873541 42873541 C T AKAP11 Missense_Mutation p.S220F 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-AC-A23H-01 13 42875259 42875259 C A AKAP11 Missense_Mutation p.H793N 0.23 deleterious(0.04) benign(0.005) TCGA-AC-A23H-01 13 42875586 42875586 G A AKAP11 Missense_Mutation p.E902K 0.17 tolerated(0.1) benign(0.044) TCGA-AC-A23H-01 13 46919692 46919692 C G KIAA0226L Missense_Mutation p.E559Q 0.39 deleterious(0.02) possibly_damaging(0.461) TCGA-AC-A23H-01 13 47260119 47260119 G C LRCH1 Missense_Mutation p.M255I 0.20 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 13 47408779 47408779 C G HTR2A 3'UTR 0.33 TCGA-AC-A23H-01 13 47409028 47409028 C A HTR2A Nonsense_Mutation p.E454* 0.71 TCGA-AC-A23H-01 13 49039421 49039421 G C RB1 Silent p.G802G 0.23 TCGA-AC-A23H-01 13 49796261 49796261 G T MLNR Missense_Mutation p.M329I 0.21 tolerated(0.35) benign(0.345) TCGA-AC-A23H-01 13 50034302 50034302 G C SETDB2 Missense_Mutation p.E26Q 0.21 deleterious(0.02) benign(0.191) TCGA-AC-A23H-01 13 50097325 50097325 G C PHF11 Missense_Mutation p.M195I 0.51 tolerated(0.28) benign(0.003) TCGA-AC-A23H-01 13 51956203 51956203 C G INTS6 Missense_Mutation p.E413Q 0.41 tolerated(0.27) probably_damaging(0.995) TCGA-AC-A23H-01 13 52508761 52508761 G T ATP7B 3'UTR 0.33 TCGA-AC-A23H-01 13 52523911 52523911 C T ATP7B Missense_Mutation p.D918N 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 13 52730399 52730399 G C NEK3 5'UTR 0.42 TCGA-AC-A23H-01 13 58208748 58208748 G A PCDH17 Missense_Mutation p.E690K 0.72 tolerated(0.05) benign(0.107) TCGA-AC-A23H-01 13 70456546 70456546 C T KLHL1 Missense_Mutation p.D366N 0.16 deleterious(0.01) possibly_damaging(0.6) TCGA-AC-A23H-01 13 73372093 73372093 C G PIBF1 Missense_Mutation p.L201V 0.51 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 13 77673021 77673021 C G MYCBP2 Missense_Mutation p.K2718N 0.33 benign(0.159) TCGA-AC-A23H-01 13 77695616 77695616 C G MYCBP2 Missense_Mutation p.D2640H 0.19 possibly_damaging(0.723) TCGA-AC-A23H-01 13 77764443 77764443 C G MYCBP2 Missense_Mutation p.K1328N 0.24 probably_damaging(0.993) TCGA-AC-A23H-01 13 78293699 78293699 C T SLAIN1 Missense_Mutation p.S56L 0.27 tolerated(0.19) unknown(0) TCGA-AC-A23H-01 13 79191224 79191224 G C RNF219 Silent p.S224S 0.24 TCGA-AC-A23H-01 13 79212993 79212993 C G RNF219 Missense_Mutation p.E172Q 0.20 deleterious(0.03) probably_damaging(0.939) TCGA-AC-A23H-01 13 79216331 79216331 C T RNF219 Missense_Mutation p.E76K 0.36 tolerated(0.1) probably_damaging(0.996) TCGA-AC-A23H-01 13 79943060 79943060 G C RBM26 Missense_Mutation p.P234A 0.43 tolerated(0.06) benign(0.09) TCGA-AC-A23H-01 13 86369320 86369320 G C SLITRK6 Missense_Mutation p.L442V 0.20 deleterious(0) benign(0.077) TCGA-AC-A23H-01 13 88329645 88329645 C G SLITRK5 Missense_Mutation p.L668V 0.21 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 13 95696656 95696656 T C ABCC4 Missense_Mutation p.K1165E 0.20 tolerated(0.07) possibly_damaging(0.824) TCGA-AC-A23H-01 13 96489359 96489359 C G UGGT2 Missense_Mutation p.R1461T 0.15 tolerated(0.23) possibly_damaging(0.543) TCGA-AC-A23H-01 13 96743542 96743542 C G HS6ST3 Missense_Mutation p.I142M 0.28 tolerated(0.38) benign(0.364) TCGA-AC-A23H-01 13 99337036 99337036 C A SLC15A1 Missense_Mutation p.R690I 0.12 tolerated(0.17) benign(0.01) TCGA-AC-A23H-01 13 99337049 99337049 C T SLC15A1 Missense_Mutation p.E686K 0.53 tolerated(0.11) benign(0.023) TCGA-AC-A23H-01 13 99337052 99337052 C G SLC15A1 Missense_Mutation p.D685H 0.11 deleterious(0.01) possibly_damaging(0.592) TCGA-AC-A23H-01 13 99361019 99361019 G C SLC15A1 Missense_Mutation p.S357C 0.25 deleterious(0) possibly_damaging(0.84) TCGA-AC-A23H-01 13 99462537 99462537 C G DOCK9 Silent p.L1713L 0.11 TCGA-AC-A23H-01 13 99540897 99540897 G A DOCK9 Missense_Mutation p.S593L 0.64 tolerated(0.33) benign(0.003) TCGA-AC-A23H-01 14 100118806 100118806 C T HHIPL1 Silent p.L167L 0.16 TCGA-AC-A23H-01 14 100792467 100792467 C G SLC25A47 Intron 0.14 TCGA-AC-A23H-01 14 102493882 102493883 - T DYNC1H1 Splice_Site p.X3016_splice 0.31 TCGA-AC-A23H-01 14 102552649 102552649 G C HSP90AA1 Missense_Mutation p.Q145E 0.40 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-AC-A23H-01 14 103599098 103599098 G A TNFAIP2 Silent p.K478K 0.24 TCGA-AC-A23H-01 14 103932331 103932331 G A MARK3 Missense_Mutation p.R267K 0.39 deleterious(0.01) probably_damaging(0.97) TCGA-AC-A23H-01 14 104027276 104027276 C G BAG5 Missense_Mutation p.E117Q 0.54 tolerated(0.48) probably_damaging(0.909) TCGA-AC-A23H-01 14 104206196 104206196 G C PPP1R13B Missense_Mutation p.L853V 0.21 tolerated(0.62) benign(0.001) TCGA-AC-A23H-01 14 105196465 105196465 G A ADSSL1 Missense_Mutation p.R79K 0.29 tolerated_low_confidence(0.21) benign(0) TCGA-AC-A23H-01 14 105410171 105410171 C T AHNAK2 Missense_Mutation p.E3873K 0.29 possibly_damaging(0.591) TCGA-AC-A23H-01 14 105410730 105410730 G A AHNAK2 Silent p.L3686L 0.22 TCGA-AC-A23H-01 14 105412781 105412781 C T AHNAK2 Missense_Mutation p.V3003M 0.41 benign(0.07) TCGA-AC-A23H-01 14 105415983 105415983 C G AHNAK2 Silent p.L1935L 0.32 TCGA-AC-A23H-01 14 105722752 105722752 G A BRF1 Intron 0.33 TCGA-AC-A23H-01 14 105858085 105858085 G A PACS2 Missense_Mutation p.G746E 0.42 tolerated(0.1) possibly_damaging(0.662) TCGA-AC-A23H-01 14 105860932 105860932 C T PACS2 Nonsense_Mutation p.Q880* 0.29 TCGA-AC-A23H-01 14 105957409 105957409 G C C14orf80 5'Flank 0.30 TCGA-AC-A23H-01 14 105958999 105958999 G A C14orf80 Silent p.L171L 0.41 TCGA-AC-A23H-01 14 106478109 106478109 C T IGHV4-4 3'Flank 0.47 TCGA-AC-A23H-01 14 106926397 106926397 C G IGHV3-43 Missense_Mutation p.D49H 0.19 deleterious_low_confidence(0) benign(0.013) TCGA-AC-A23H-01 14 107012977 107012977 G A IGHV3-49 Silent p.S106S 0.55 TCGA-AC-A23H-01 14 107048901 107048901 G C IGHV3-53 Missense_Mutation p.S40C 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-AC-A23H-01 14 107113791 107113791 G A IGHV3-64 Nonsense_Mutation p.Q102* 0.23 TCGA-AC-A23H-01 14 19378131 19378131 C T OR11H12 Nonsense_Mutation p.Q180* 0.16 TCGA-AC-A23H-01 14 19571371 19571371 G C POTEG Missense_Mutation p.E384Q 0.09 deleterious(0.01) benign(0.171) TCGA-AC-A23H-01 14 20482895 20482895 C T OR4K14 Missense_Mutation p.G153E 0.11 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 14 20781925 20781925 G A CCNB1IP1 Silent p.F111F 0.19 TCGA-AC-A23H-01 14 20781943 20781943 G C CCNB1IP1 Silent p.L105L 0.17 TCGA-AC-A23H-01 14 20925575 20925575 C T APEX1 Missense_Mutation p.H289Y 0.36 deleterious(0) benign(0.052) TCGA-AC-A23H-01 14 21109406 21109406 C A OR6S1 Missense_Mutation p.A149S 0.43 tolerated(0.18) possibly_damaging(0.738) TCGA-AC-A23H-01 14 21490555 21490555 G C NDRG2 Silent p.L73L 0.24 TCGA-AC-A23H-01 14 21500191 21500191 G A TPPP2 Silent p.V156V 0.55 TCGA-AC-A23H-01 14 21544939 21544939 G A ARHGEF40 Missense_Mutation p.E642K 0.18 tolerated(1) probably_damaging(0.967) TCGA-AC-A23H-01 14 21837945 21837945 G T SUPT16H Missense_Mutation p.F198L 0.24 tolerated(1) benign(0.006) TCGA-AC-A23H-01 14 21868196 21868196 C T CHD8 Silent p.L1587L 0.23 TCGA-AC-A23H-01 14 21873580 21873580 C G CHD8 Missense_Mutation p.R1032T 0.58 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 14 21964972 21964972 C A TOX4 3'UTR 0.36 TCGA-AC-A23H-01 14 22102971 22102971 C G OR10G2 Missense_Mutation p.D10H 0.26 tolerated(0.31) benign(0.003) TCGA-AC-A23H-01 14 22181000 22181000 C T TRAV2 Missense_Mutation p.S91F 0.24 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 14 22315199 22315199 C G TRAV8-2 Missense_Mutation p.S46C 0.27 tolerated(0.08) probably_damaging(0.956) TCGA-AC-A23H-01 14 22981835 22981835 G A TRAJ30 Missense_Mutation p.%3D 0.19 TCGA-AC-A23H-01 14 23303608 23303608 G C MRPL52 3'UTR 0.17 TCGA-AC-A23H-01 14 23311917 23311917 G A MMP14 Missense_Mutation p.D227N 0.13 tolerated(0.88) probably_damaging(0.932) TCGA-AC-A23H-01 14 23398425 23398425 G C PRMT5 Intron 0.16 TCGA-AC-A23H-01 14 23456601 23456601 C T C14orf93 Silent p.L480L 0.49 TCGA-AC-A23H-01 14 23467826 23467826 T C C14orf93 Missense_Mutation p.K136R 0.21 tolerated_low_confidence(0.29) benign(0.001) TCGA-AC-A23H-01 14 23523780 23523780 G C CDH24 Nonsense_Mutation p.S240* 0.34 TCGA-AC-A23H-01 14 23842573 23842573 C T IL25 Silent p.L82L 0.31 TCGA-AC-A23H-01 14 23884290 23884290 C G MYH7 Missense_Mutation p.E1825Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 14 23887429 23887429 C T MYH7 Missense_Mutation p.E1387K 0.28 deleterious(0.02) probably_damaging(1) TCGA-AC-A23H-01 14 23938904 23938904 G T NGDN 5'UTR 0.21 TCGA-AC-A23H-01 14 23946772 23946772 C T NGDN Intron 0.15 TCGA-AC-A23H-01 14 24038721 24038721 G C JPH4 3'UTR 0.17 TCGA-AC-A23H-01 14 24588993 24588993 G C DCAF11 Missense_Mutation p.G327A 0.19 tolerated(0.11) possibly_damaging(0.646) TCGA-AC-A23H-01 14 24610475 24610475 C G EMC9 Missense_Mutation p.K13N 0.47 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 14 24626762 24626762 C T RNF31 Missense_Mutation p.A881V 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-AC-A23H-01 14 24657817 24657817 G T IPO4 Silent p.R33R 0.27 TCGA-AC-A23H-01 14 24684867 24684867 C T MDP1 Missense_Mutation p.D34N 0.22 tolerated(0.37) benign(0.023) TCGA-AC-A23H-01 14 24707568 24707568 G C GMPR2 Missense_Mutation p.E290Q 0.25 tolerated(0.29) benign(0.07) TCGA-AC-A23H-01 14 24731556 24731556 C T TGM1 Translation_Start_Site p.M1? 0.18 tolerated_low_confidence(0.08) benign(0.001) TCGA-AC-A23H-01 14 24795528 24795528 G A ADCY4 Silent p.F515F 0.25 TCGA-AC-A23H-01 14 24885065 24885065 C A NYNRIN Silent p.L1370L 0.29 TCGA-AC-A23H-01 14 29237811 29237811 C T FOXG1 Silent p.S442S 0.17 TCGA-AC-A23H-01 14 31549780 31549780 G C AP4S1 Missense_Mutation p.S99T 0.25 deleterious(0.01) benign(0.204) TCGA-AC-A23H-01 14 31852862 31852862 G A HEATR5A Silent p.L194L 0.56 TCGA-AC-A23H-01 14 35649884 35649884 G C KIAA0391 Missense_Mutation p.K392N 0.30 tolerated(0.13) benign(0.001) TCGA-AC-A23H-01 14 35742827 35742827 G C KIAA0391 3'UTR 0.40 TCGA-AC-A23H-01 14 38061313 38061313 C T FOXA1 Missense_Mutation p.D226N 0.53 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 14 39645775 39645775 G C PNN Missense_Mutation p.R77T 0.26 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 14 39722147 39722147 C T MIA2 Missense_Mutation p.S588F 0.19 tolerated(0.21) probably_damaging(0.961) TCGA-AC-A23H-01 14 45512944 45512944 G A FAM179B Missense_Mutation p.E1290K 0.28 deleterious(0.02) benign(0.025) TCGA-AC-A23H-01 14 45665674 45665674 C T FANCM Silent p.F1880F 0.18 TCGA-AC-A23H-01 14 47351424 47351424 C T MDGA2 Missense_Mutation p.A747T 0.25 tolerated(0.62) benign(0.213) TCGA-AC-A23H-01 14 50053006 50053006 G A RPS29 Missense_Mutation p.S20F 0.21 tolerated(0.07) benign(0.012) TCGA-AC-A23H-01 14 50117145 50117145 G C POLE2 Missense_Mutation p.I445M 0.51 tolerated(0.05) benign(0.142) TCGA-AC-A23H-01 14 50597447 50597447 C A SOS2 Nonsense_Mutation p.G1037* 0.33 TCGA-AC-A23H-01 14 50655412 50655412 T C SOS2 Missense_Mutation p.M173V 0.16 deleterious(0.01) benign(0.002) TCGA-AC-A23H-01 14 50769675 50769675 G A L2HGDH Silent p.L67L 0.26 TCGA-AC-A23H-01 14 51371186 51371186 G A ABHD12B 3'UTR 0.50 TCGA-AC-A23H-01 14 51371200 51371200 C G ABHD12B 3'UTR 0.24 TCGA-AC-A23H-01 14 52477661 52477661 C T NID2 Missense_Mutation p.E1219K 0.30 tolerated(0.16) benign(0.168) TCGA-AC-A23H-01 14 52936807 52936807 G C TXNDC16 Missense_Mutation p.I522M 0.20 tolerated(0.24) benign(0.01) TCGA-AC-A23H-01 14 53513360 53513360 C G DDHD1 3'UTR 0.24 TCGA-AC-A23H-01 14 55429552 55429552 C G WDHD1 Missense_Mutation p.E851Q 0.29 deleterious(0.03) probably_damaging(0.973) TCGA-AC-A23H-01 14 55529411 55529411 C G MAPK1IP1L Missense_Mutation p.Q32E 0.20 tolerated_low_confidence(0.1) benign(0.388) TCGA-AC-A23H-01 14 55529446 55529446 G A MAPK1IP1L Silent p.P43P 0.47 TCGA-AC-A23H-01 14 55900357 55900357 C T TBPL2 Missense_Mutation p.G260E 0.24 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 14 56763422 56763422 G C PELI2 Missense_Mutation p.Q267H 0.32 tolerated(0.51) possibly_damaging(0.748) TCGA-AC-A23H-01 14 58471293 58471293 C G C14orf37 3'UTR 0.59 TCGA-AC-A23H-01 14 60213020 60213020 C T RTN1 Missense_Mutation p.E141K 0.17 deleterious(0.04) benign(0.156) TCGA-AC-A23H-01 14 62542004 62542004 C A SYT16 Silent p.L296L 0.50 TCGA-AC-A23H-01 14 62547729 62547729 C T SYT16 Missense_Mutation p.H391Y 0.39 deleterious(0.02) probably_damaging(0.982) TCGA-AC-A23H-01 14 63316565 63316565 G C KCNH5 Missense_Mutation p.L459V 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-AC-A23H-01 14 63920533 63920533 G C PPP2R5E Missense_Mutation p.F76L 0.31 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 14 64483218 64483218 G C SYNE2 Missense_Mutation p.E1586Q 0.33 probably_damaging(0.96) TCGA-AC-A23H-01 14 64606759 64606759 G C SYNE2 Missense_Mutation p.D4982H 0.29 possibly_damaging(0.646) TCGA-AC-A23H-01 14 64632077 64632077 G C SYNE2 Missense_Mutation p.E5518D 0.20 probably_damaging(0.998) TCGA-AC-A23H-01 14 64635624 64635624 G C SYNE2 Missense_Mutation p.Q5645H 0.18 probably_damaging(0.999) TCGA-AC-A23H-01 14 64867571 64867571 C T MTHFD1 Silent p.F34F 0.45 TCGA-AC-A23H-01 14 64988426 64988426 G A ZBTB1 Missense_Mutation p.M68I 0.21 tolerated(0.08) possibly_damaging(0.844) TCGA-AC-A23H-01 14 64989183 64989183 G A ZBTB1 Missense_Mutation p.E321K 0.35 tolerated(0.5) probably_damaging(0.98) TCGA-AC-A23H-01 14 65194521 65194521 C G PLEKHG3 Missense_Mutation p.L58V 0.40 tolerated(0.51) benign(0.005) TCGA-AC-A23H-01 14 65259777 65259777 C G SPTB Missense_Mutation p.E868D 0.35 tolerated(0.06) possibly_damaging(0.761) TCGA-AC-A23H-01 14 68159249 68159249 G A RDH11 Silent p.I85I 0.40 TCGA-AC-A23H-01 14 69522274 69522274 C T DCAF5 Missense_Mutation p.E377K 0.57 tolerated(0.06) benign(0.003) TCGA-AC-A23H-01 14 69522278 69522278 C G DCAF5 Silent p.R375R 0.57 TCGA-AC-A23H-01 14 70925044 70925044 G C ADAM21 Silent p.L276L 0.30 TCGA-AC-A23H-01 14 71444508 71444508 C T PCNX Missense_Mutation p.S485F 0.16 tolerated(0.73) possibly_damaging(0.477) TCGA-AC-A23H-01 14 71514574 71514574 C G PCNX Missense_Mutation p.S1404C 0.51 deleterious(0.03) benign(0.039) TCGA-AC-A23H-01 14 71576714 71576714 G C PCNX 3'UTR 0.33 TCGA-AC-A23H-01 14 72055318 72055318 C T SIPA1L1 Silent p.L243L 0.49 TCGA-AC-A23H-01 14 73464634 73464634 G A ZFYVE1 Silent p.F291F 0.55 TCGA-AC-A23H-01 14 73578242 73578242 C G RBM25 Missense_Mutation p.S675C 0.17 possibly_damaging(0.7) TCGA-AC-A23H-01 14 73743429 73743429 C T NUMB Missense_Mutation p.E605K 0.56 tolerated_low_confidence(0.46) benign(0.017) TCGA-AC-A23H-01 14 74009751 74009751 C T ACOT1 Intron 0.21 TCGA-AC-A23H-01 14 74062046 74062046 C G ACOT4 Missense_Mutation p.I318M 0.26 deleterious(0) possibly_damaging(0.882) TCGA-AC-A23H-01 14 74138262 74138262 T G DNAL1 Missense_Mutation p.S76A 0.23 deleterious(0.03) benign(0.159) TCGA-AC-A23H-01 14 74436730 74436730 C G ENTPD5 Missense_Mutation p.D395H 0.47 deleterious(0.04) probably_damaging(0.926) TCGA-AC-A23H-01 14 74557976 74557976 G C LIN52 Missense_Mutation p.D25H 0.20 deleterious(0) possibly_damaging(0.717) TCGA-AC-A23H-01 14 74762598 74762598 C T ABCD4 Silent p.V209V 0.49 TCGA-AC-A23H-01 14 74764731 74764731 C G ABCD4 Silent p.V109V 0.29 TCGA-AC-A23H-01 14 74824520 74824520 C A VRTN Nonsense_Mutation p.S345* 0.22 TCGA-AC-A23H-01 14 74959988 74959988 G A NPC2 5'UTR 0.24 TCGA-AC-A23H-01 14 74989546 74989546 C G LTBP2 Missense_Mutation p.R869T 0.56 tolerated(1) benign(0.009) TCGA-AC-A23H-01 14 75019024 75019024 G A LTBP2 Missense_Mutation p.S422F 0.45 deleterious(0) possibly_damaging(0.83) TCGA-AC-A23H-01 14 75245273 75245273 G T YLPM1 Nonsense_Mutation p.E333* 0.43 TCGA-AC-A23H-01 14 75264722 75264722 G A YLPM1 Missense_Mutation p.E908K 0.21 probably_damaging(0.979) TCGA-AC-A23H-01 14 75515642 75515642 G A MLH3 Silent p.I239I 0.25 TCGA-AC-A23H-01 14 75530175 75530175 G C ACYP1 Missense_Mutation p.Q28E 0.22 tolerated(1) probably_damaging(0.998) TCGA-AC-A23H-01 14 78174465 78174465 C A SLIRP Nonsense_Mutation p.S4* 0.62 TCGA-AC-A23H-01 14 78174487 78174487 G C SLIRP Silent p.A11A 0.18 TCGA-AC-A23H-01 14 80328293 80328293 G T NRXN3 Nonsense_Mutation p.E1058* 0.28 TCGA-AC-A23H-01 14 80677714 80677714 G A DIO2 Silent p.L34L 0.23 TCGA-AC-A23H-01 14 88651762 88651762 C T KCNK10 3'UTR 0.25 TCGA-AC-A23H-01 14 88862531 88862531 G T SPATA7 Silent p.V74V 0.10 TCGA-AC-A23H-01 14 91372565 91372565 C T RPS6KA5 Missense_Mutation p.M295I 0.22 tolerated(0.39) benign(0.001) TCGA-AC-A23H-01 14 92471449 92471449 G C TRIP11 Silent p.L957L 0.29 TCGA-AC-A23H-01 14 92499586 92499586 C G TRIP11 Missense_Mutation p.D51H 0.42 tolerated(0.09) benign(0.002) TCGA-AC-A23H-01 14 92792209 92792209 C T SLC24A4 Intron 0.23 TCGA-AC-A23H-01 14 92949139 92949139 C A SLC24A4 Missense_Mutation p.F457L 0.16 deleterious(0) possibly_damaging(0.898) TCGA-AC-A23H-01 14 93276687 93276687 C G GOLGA5 Missense_Mutation p.L361V 0.23 tolerated(0.09) possibly_damaging(0.573) TCGA-AC-A23H-01 14 93649516 93649516 C A MOAP1 3'UTR 0.59 TCGA-AC-A23H-01 14 93677001 93677001 C T RP11-371E8.4 Missense_Mutation p.R117C 0.37 tolerated(0.08) possibly_damaging(0.535) TCGA-AC-A23H-01 14 93714871 93714871 C T BTBD7 Missense_Mutation p.R691Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 14 93754870 93754870 C G BTBD7 Intron 0.25 TCGA-AC-A23H-01 14 94128949 94128949 G A UNC79 Splice_Site p.X2038_splice 0.55 TCGA-AC-A23H-01 14 94423200 94423200 C G ASB2 Missense_Mutation p.E75Q 0.56 tolerated(0.45) benign(0.002) TCGA-AC-A23H-01 14 94756904 94756904 G C SERPINA10 Silent p.L9L 0.57 TCGA-AC-A23H-01 14 94929466 94929466 G C SERPINA9 Silent p.L424L 0.22 TCGA-AC-A23H-01 14 96707349 96707349 G A BDKRB2 Silent p.L228L 0.48 TCGA-AC-A23H-01 14 96707646 96707646 C T BDKRB2 Silent p.L327L 0.22 TCGA-AC-A23H-01 14 96939029 96939029 G C AK7 Missense_Mutation p.D498H 0.21 deleterious(0.01) possibly_damaging(0.863) TCGA-AC-A23H-01 14 99865091 99865091 G C SETD3 Silent p.L570L 0.51 TCGA-AC-A23H-01 14 99959023 99959023 G A CCNK Silent p.E3E 0.31 TCGA-AC-A23H-01 15 100211585 100211585 G C MEF2A Intron 0.22 TCGA-AC-A23H-01 15 100250881 100250881 T C MEF2A Missense_Mutation p.F345S 0.54 deleterious(0.02) probably_damaging(0.959) TCGA-AC-A23H-01 15 100269517 100269517 G C LYSMD4 Silent p.V235V 0.25 TCGA-AC-A23H-01 15 100657086 100657086 C A ADAMTS17 Missense_Mutation p.K618N 0.41 tolerated(0.15) benign(0.103) TCGA-AC-A23H-01 15 101434160 101434160 G A ALDH1A3 Nonsense_Mutation p.W180* 0.33 TCGA-AC-A23H-01 15 101718105 101718105 C G CHSY1 Missense_Mutation p.D633H 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 15 102194799 102194799 C T TARSL2 Missense_Mutation p.E799K 0.23 deleterious(0) probably_damaging(0.96) TCGA-AC-A23H-01 15 102211921 102211921 C T TARSL2 Missense_Mutation p.E607K 0.48 tolerated(0.69) benign(0.001) TCGA-AC-A23H-01 15 102261472 102261472 C T TARSL2 Silent p.L141L 0.49 TCGA-AC-A23H-01 15 102358835 102358835 C G OR4F15 Missense_Mutation p.S149C 0.25 deleterious_low_confidence(0) benign(0.002) TCGA-AC-A23H-01 15 20645740 20645740 G C HERC2P3 RNA 0.13 TCGA-AC-A23H-01 15 22368953 22368953 C T OR4M2 Silent p.I126I 0.17 TCGA-AC-A23H-01 15 22382633 22382633 G T OR4N4 Missense_Mutation p.G54V 0.08 tolerated(0.31) benign(0.02) TCGA-AC-A23H-01 15 22382649 22382649 C A OR4N4 Silent p.L59L 0.07 TCGA-AC-A23H-01 15 22861855 22861855 G C TUBGCP5 Silent p.L625L 0.11 TCGA-AC-A23H-01 15 22956470 22956470 C T CYFIP1 Silent p.L569L 0.22 TCGA-AC-A23H-01 15 23006164 23006164 G C NIPA2 3'UTR 0.29 TCGA-AC-A23H-01 15 23049288 23049288 G A NIPA1 Silent p.F177F 0.27 TCGA-AC-A23H-01 15 23200251 23200251 C G WHAMMP3 RNA 0.36 TCGA-AC-A23H-01 15 23686764 23686764 C G GOLGA6L2 Missense_Mutation p.K286N 0.20 possibly_damaging(0.895) TCGA-AC-A23H-01 15 23890429 23890429 G A MAGEL2 Silent p.L218L 0.27 TCGA-AC-A23H-01 15 23932068 23932068 C T NDN Silent p.V99V 0.36 TCGA-AC-A23H-01 15 25940219 25940219 C G ATP10A Missense_Mutation p.K945N 0.28 tolerated(0.25) benign(0.016) TCGA-AC-A23H-01 15 27159947 27159947 C T GABRA5 Intron 0.28 TCGA-AC-A23H-01 15 28171386 28171386 G A OCA2 Silent p.L656L 0.18 TCGA-AC-A23H-01 15 28431765 28431765 G A HERC2 Missense_Mutation p.S2928L 0.15 benign(0.406) TCGA-AC-A23H-01 15 33922234 33922234 G A RYR3 Missense_Mutation p.E925K 0.48 probably_damaging(0.929) TCGA-AC-A23H-01 15 33954549 33954549 C G RYR3 Missense_Mutation p.F1606L 0.29 benign(0.265) TCGA-AC-A23H-01 15 34134146 34134146 G C RYR3 Missense_Mutation p.K4373N 0.18 benign(0.129) TCGA-AC-A23H-01 15 34528968 34528968 C T SLC12A6 Missense_Mutation p.E995K 0.15 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 15 34640460 34640460 C G NUTM1 Missense_Mutation p.Q103E 0.14 deleterious(0.01) possibly_damaging(0.752) TCGA-AC-A23H-01 15 35274401 35274401 C T ZNF770 Nonsense_Mutation p.W412* 0.20 TCGA-AC-A23H-01 15 35275357 35275357 C T ZNF770 Silent p.L93L 0.24 TCGA-AC-A23H-01 15 37376049 37376049 G C MEIS2 Nonsense_Mutation p.S226* 0.19 TCGA-AC-A23H-01 15 38811530 38811530 C T RASGRP1 Silent p.L123L 0.18 TCGA-AC-A23H-01 15 39544726 39544726 G A C15orf54 Silent p.K130K 0.39 TCGA-AC-A23H-01 15 40301923 40301923 G A EIF2AK4 Missense_Mutation p.D1229N 0.23 deleterious(0.03) possibly_damaging(0.838) TCGA-AC-A23H-01 15 40308739 40308739 G A EIF2AK4 Missense_Mutation p.D1266N 0.22 tolerated(0.96) benign(0.008) TCGA-AC-A23H-01 15 40564736 40564736 C T PAK6 Silent p.F390F 0.25 TCGA-AC-A23H-01 15 40655867 40655867 G C DISP2 Missense_Mutation p.R54T 0.23 deleterious_low_confidence(0.03) benign(0.221) TCGA-AC-A23H-01 15 40758220 40758220 C T BAHD1 Missense_Mutation p.S745F 0.23 tolerated(0.07) possibly_damaging(0.572) TCGA-AC-A23H-01 15 40914878 40914878 G C CASC5 Missense_Mutation p.E832Q 0.16 deleterious(0.03) probably_damaging(0.915) TCGA-AC-A23H-01 15 41192432 41192432 C T VPS18 Silent p.F472F 0.21 TCGA-AC-A23H-01 15 41483693 41483693 G C EXD1 Missense_Mutation p.Q213E 0.16 tolerated(0.1) benign(0.007) TCGA-AC-A23H-01 15 41688938 41688938 C G NDUFAF1 Missense_Mutation p.G107A 0.15 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 15 41749930 41749930 C T RTF1 Missense_Mutation p.S173L 0.21 tolerated(0.15) possibly_damaging(0.558) TCGA-AC-A23H-01 15 41796311 41796311 C G LTK Missense_Mutation p.E826D 0.28 tolerated_low_confidence(0.25) benign(0.014) TCGA-AC-A23H-01 15 42041379 42041379 C G MGA Silent p.S1858S 0.48 TCGA-AC-A23H-01 15 42041582 42041582 C A MGA Nonsense_Mutation p.S1926* 0.51 TCGA-AC-A23H-01 15 42052713 42052713 C G MGA Missense_Mutation p.L2462V 0.29 deleterious(0.04) probably_damaging(0.913) TCGA-AC-A23H-01 15 42107454 42107454 C T MAPKBP1 Intron 0.22 TCGA-AC-A23H-01 15 42115323 42115323 C G MAPKBP1 Silent p.L1173L 0.21 TCGA-AC-A23H-01 15 42115998 42115998 G A MAPKBP1 Missense_Mutation p.E1324K 0.29 tolerated(0.25) benign(0.148) TCGA-AC-A23H-01 15 42180140 42180140 G C SPTBN5 Silent p.L215L 0.48 TCGA-AC-A23H-01 15 42193119 42193119 G C EHD4 Silent p.V450V 0.23 TCGA-AC-A23H-01 15 42202044 42202044 G A EHD4 Silent p.I314I 0.26 TCGA-AC-A23H-01 15 42293365 42293365 C G PLA2G4E Missense_Mutation p.K221N 0.28 tolerated(0.05) benign(0.398) TCGA-AC-A23H-01 15 42373776 42373776 G T PLA2G4D Silent p.L286L 0.29 TCGA-AC-A23H-01 15 42434089 42434089 C G PLA2G4F 3'UTR 0.35 TCGA-AC-A23H-01 15 42476796 42476796 C T VPS39 Missense_Mutation p.D213N 0.25 tolerated(0.33) benign(0.016) TCGA-AC-A23H-01 15 42693954 42693954 G A CAPN3 Silent p.R490R 0.33 TCGA-AC-A23H-01 15 42730858 42730858 C G ZNF106 Missense_Mutation p.E1495Q 0.26 tolerated(0.05) probably_damaging(0.997) TCGA-AC-A23H-01 15 42744120 42744120 A G ZNF106 Missense_Mutation p.I94T 0.26 tolerated(0.7) benign(0.046) TCGA-AC-A23H-01 15 43022933 43022933 C T CDAN1 Silent p.L679L 0.38 TCGA-AC-A23H-01 15 43577046 43577046 C T TGM7 Missense_Mutation p.E324K 0.20 tolerated(0.32) possibly_damaging(0.815) TCGA-AC-A23H-01 15 43627151 43627151 G A ADAL 5'UTR 0.33 TCGA-AC-A23H-01 15 43668352 43668352 C G TUBGCP4 Silent p.L45L 0.24 TCGA-AC-A23H-01 15 43707872 43707872 G A TP53BP1 Missense_Mutation p.S1670L 0.24 deleterious(0) possibly_damaging(0.783) TCGA-AC-A23H-01 15 43708564 43708564 C G TP53BP1 Missense_Mutation p.E1578Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 15 43748606 43748606 G C TP53BP1 Missense_Mutation p.Q734E 0.31 tolerated_low_confidence(0.18) benign(0.008) TCGA-AC-A23H-01 15 43820962 43820962 G T MAP1A Nonsense_Mutation p.E2431* 0.23 TCGA-AC-A23H-01 15 43821934 43821934 G A MAP1A Missense_Mutation p.D2708N 0.23 probably_damaging(0.999) TCGA-AC-A23H-01 15 43892868 43892868 G C STRC Silent p.L1619L 0.17 TCGA-AC-A23H-01 15 44068711 44068711 C G ELL3 Missense_Mutation p.R55P 0.16 deleterious(0.05) probably_damaging(0.982) TCGA-AC-A23H-01 15 44092630 44092630 C G HYPK Intron 0.24 TCGA-AC-A23H-01 15 44092665 44092665 G T HYPK Intron 0.22 TCGA-AC-A23H-01 15 44107172 44107172 C T MFAP1 Missense_Mutation p.E134K 0.23 tolerated(0.12) benign(0.292) TCGA-AC-A23H-01 15 44158455 44158455 G C WDR76 Missense_Mutation p.K582N 0.20 deleterious(0) benign(0.011) TCGA-AC-A23H-01 15 44958149 44958149 G C PATL2 3'UTR 0.21 TCGA-AC-A23H-01 15 44964369 44964369 G A PATL2 Intron 0.22 TCGA-AC-A23H-01 15 45444575 45444575 C G DUOX1 Missense_Mutation p.F1095L 0.15 deleterious(0.02) possibly_damaging(0.571) TCGA-AC-A23H-01 15 45545461 45545461 G A SLC28A2 Silent p.E16E 0.25 TCGA-AC-A23H-01 15 45694529 45694529 C T SPATA5L1 5'UTR 0.20 TCGA-AC-A23H-01 15 45695561 45695561 C A SPATA5L1 Silent p.R312R 0.55 TCGA-AC-A23H-01 15 48434501 48434501 G A SLC24A5 Missense_Mutation p.E486K 0.24 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 15 48714260 48714260 C G FBN1 Missense_Mutation p.D2487H 0.18 probably_damaging(0.984) TCGA-AC-A23H-01 15 48720660 48720660 C T FBN1 Missense_Mutation p.E2294K 0.16 probably_damaging(0.998) TCGA-AC-A23H-01 15 48729539 48729539 C G FBN1 Missense_Mutation p.G2120A 0.25 benign(0.118) TCGA-AC-A23H-01 15 49048160 49048160 C A CEP152 Missense_Mutation p.Q1095H 0.22 tolerated(0.07) probably_damaging(0.975) TCGA-AC-A23H-01 15 49076222 49076222 C T CEP152 Silent p.L423L 0.25 TCGA-AC-A23H-01 15 49089677 49089677 G C CEP152 Missense_Mutation p.P121A 0.21 tolerated(0.49) possibly_damaging(0.533) TCGA-AC-A23H-01 15 49143415 49143415 C T SHC4 Missense_Mutation p.E425K 0.19 tolerated(0.16) benign(0.038) TCGA-AC-A23H-01 15 49254971 49254971 G C SHC4 Missense_Mutation p.T81S 0.36 tolerated(0.09) benign(0.11) TCGA-AC-A23H-01 15 49293175 49293175 C T SECISBP2L Missense_Mutation p.R716K 0.21 tolerated(0.06) probably_damaging(0.979) TCGA-AC-A23H-01 15 49426232 49426232 C T COPS2 Silent p.K270K 0.29 TCGA-AC-A23H-01 15 49776613 49776613 C T FGF7 Missense_Mutation p.A166V 0.22 deleterious(0) possibly_damaging(0.545) TCGA-AC-A23H-01 15 49903435 49903435 C G FAM227B Missense_Mutation p.E28Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 15 50593097 50593097 C T GABPB1 Missense_Mutation p.E208K 0.31 tolerated(0.52) benign(0.037) TCGA-AC-A23H-01 15 51350622 51350622 G C TNFAIP8L3 Nonsense_Mutation p.S112* 0.28 TCGA-AC-A23H-01 15 51693901 51693901 C G GLDN Missense_Mutation p.S380C 0.18 tolerated(0.07) benign(0.049) TCGA-AC-A23H-01 15 51772888 51772888 C G DMXL2 Missense_Mutation p.E2139Q 0.25 tolerated(0.67) benign(0.108) TCGA-AC-A23H-01 15 51773047 51773047 C T DMXL2 Missense_Mutation p.E2086K 0.18 tolerated(1) benign(0.017) TCGA-AC-A23H-01 15 51791547 51791547 C T DMXL2 Missense_Mutation p.E1292K 0.23 tolerated(0.56) benign(0.007) TCGA-AC-A23H-01 15 52540977 52540977 C G MYO5C Missense_Mutation p.E556Q 0.18 tolerated(0.06) benign(0.364) TCGA-AC-A23H-01 15 52645845 52645845 C G MYO5A Missense_Mutation p.R1193T 0.19 tolerated(0.38) benign(0.039) TCGA-AC-A23H-01 15 52901591 52901591 G C FAM214A Nonsense_Mutation p.S507* 0.22 TCGA-AC-A23H-01 15 54305292 54305292 G C UNC13C Missense_Mutation p.K64N 0.21 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-AC-A23H-01 15 54542443 54542443 G C UNC13C Missense_Mutation p.K1083N 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A23H-01 15 54630588 54630588 G A UNC13C Silent p.A1538A 0.30 TCGA-AC-A23H-01 15 54919071 54919071 C G UNC13C Silent p.L2135L 0.28 TCGA-AC-A23H-01 15 55670508 55670508 G C CCPG1 Nonsense_Mutation p.S81* 0.24 TCGA-AC-A23H-01 15 55839113 55839113 G A PYGO1 Missense_Mutation p.S123L 0.28 deleterious(0.03) benign(0.086) TCGA-AC-A23H-01 15 55930811 55930811 T C PRTG Silent p.R796R 0.23 TCGA-AC-A23H-01 15 56390356 56390356 G C RFX7 Missense_Mutation p.L344V 0.23 tolerated_low_confidence(0.1) benign(0.007) TCGA-AC-A23H-01 15 56657683 56657683 C T TEX9 Intron 0.29 TCGA-AC-A23H-01 15 56923713 56923713 C T ZNF280D Missense_Mutation p.E975K 0.21 tolerated_low_confidence(0.08) benign(0.23) TCGA-AC-A23H-01 15 57555420 57555420 G C TCF12 Missense_Mutation p.D565H 0.50 deleterious(0.03) probably_damaging(1) TCGA-AC-A23H-01 15 57730708 57730708 G C CGNL1 Missense_Mutation p.E171Q 0.34 tolerated(0.48) benign(0.014) TCGA-AC-A23H-01 15 59225670 59225670 G A SLTM Missense_Mutation p.S32F 0.28 deleterious(0) unknown(0) TCGA-AC-A23H-01 15 59225681 59225681 G A SLTM Silent p.I28I 0.29 TCGA-AC-A23H-01 15 62212521 62212521 C G VPS13C Missense_Mutation p.E2408Q 0.35 deleterious(0.01) benign(0.252) TCGA-AC-A23H-01 15 62276051 62276051 G A VPS13C Nonsense_Mutation p.Q628* 0.20 TCGA-AC-A23H-01 15 62299590 62299590 G A VPS13C Nonsense_Mutation p.Q403* 0.22 TCGA-AC-A23H-01 15 62538089 62538089 C T AC126323.1 5'Flank 0.25 TCGA-AC-A23H-01 15 63569876 63569876 C T APH1B Silent p.L18L 0.38 TCGA-AC-A23H-01 15 63673855 63673855 G A CA12 Missense_Mutation p.S22F 0.22 tolerated(0.07) possibly_damaging(0.868) TCGA-AC-A23H-01 15 63937810 63937810 C G HERC1 Silent p.V3650V 0.18 TCGA-AC-A23H-01 15 63955206 63955206 C G HERC1 Missense_Mutation p.E2960Q 0.26 probably_damaging(0.993) TCGA-AC-A23H-01 15 64019902 64019902 C T HERC1 Missense_Mutation p.R1097K 0.27 benign(0.003) TCGA-AC-A23H-01 15 64388288 64388288 G A SNX1 Missense_Mutation p.E26K 0.25 tolerated_low_confidence(0.25) benign(0.414) TCGA-AC-A23H-01 15 64445450 64445450 C A SNX22 Missense_Mutation p.L91M 0.17 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 15 65351707 65351707 C T RASL12 Silent p.L70L 0.14 TCGA-AC-A23H-01 15 65398628 65398628 G A UBAP1L 5'UTR 0.29 TCGA-AC-A23H-01 15 65412281 65412281 G A PDCD7 Missense_Mutation p.P341S 0.27 tolerated(0.18) probably_damaging(0.999) TCGA-AC-A23H-01 15 65477517 65477517 C T CLPX 5'UTR 0.44 TCGA-AC-A23H-01 15 65559001 65559001 C T PARP16 Missense_Mutation p.E140K 0.20 tolerated(0.21) benign(0.034) TCGA-AC-A23H-01 15 65804679 65804679 C T DPP8 Silent p.K87K 0.50 TCGA-AC-A23H-01 15 65885905 65885905 C T VWA9 Missense_Mutation p.D226N 0.26 tolerated(0.19) possibly_damaging(0.601) TCGA-AC-A23H-01 15 65918071 65918071 C T SLC24A1 Silent p.L551L 0.26 TCGA-AC-A23H-01 15 65943054 65943054 G C SLC24A1 Missense_Mutation p.G856A 0.23 probably_damaging(0.994) TCGA-AC-A23H-01 15 66613045 66613045 C T DIS3L Missense_Mutation p.S434L 0.23 tolerated(0.58) benign(0.005) TCGA-AC-A23H-01 15 66615123 66615123 C T DIS3L Silent p.F475F 0.22 TCGA-AC-A23H-01 15 66679655 66679655 C T MAP2K1 5'UTR 0.27 TCGA-AC-A23H-01 15 66783070 66783070 G C MAP2K1 3'UTR 0.32 TCGA-AC-A23H-01 15 68061993 68061993 C T MAP2K5 Silent p.I396I 0.32 TCGA-AC-A23H-01 15 68642965 68642965 G A ITGA11 Silent p.F350F 0.19 TCGA-AC-A23H-01 15 69331260 69331260 C G NOX5 Missense_Mutation p.L479V 0.20 tolerated(0.42) benign(0.252) TCGA-AC-A23H-01 15 69340167 69340167 C G NOX5 Intron 0.25 TCGA-AC-A23H-01 15 70345643 70345643 C T TLE3 Missense_Mutation p.G636R 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 15 72030190 72030190 G A THSD4 Missense_Mutation p.E584K 0.18 tolerated(0.42) benign(0.065) TCGA-AC-A23H-01 15 72637722 72637722 C G HEXA Intron 0.30 TCGA-AC-A23H-01 15 72638658 72638658 C G HEXA Missense_Mutation p.E447Q 0.20 tolerated(0.2) benign(0.029) TCGA-AC-A23H-01 15 73590864 73590864 G A NEO1 Silent p.L1359L 0.23 TCGA-AC-A23H-01 15 74467323 74467323 G T ISLR Nonsense_Mutation p.E42* 0.23 TCGA-AC-A23H-01 15 74467697 74467697 C T ISLR Silent p.F166F 0.15 TCGA-AC-A23H-01 15 74468369 74468369 C G ISLR Silent p.L390L 0.19 TCGA-AC-A23H-01 15 74487618 74487618 C T STRA6 Intron 0.31 TCGA-AC-A23H-01 15 74911609 74911609 G T CLK3 Missense_Mutation p.R172S 0.16 deleterious(0.05) probably_damaging(0.966) TCGA-AC-A23H-01 15 75014943 75014943 C T CYP1A1 Missense_Mutation p.E166K 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 15 75131059 75131059 C T ULK3 Missense_Mutation p.E343K 0.17 tolerated(0.13) benign(0.422) TCGA-AC-A23H-01 15 75651118 75651118 G A MAN2C1 Nonsense_Mutation p.Q742* 0.23 TCGA-AC-A23H-01 15 75702228 75702228 C T SIN3A Silent p.Q422Q 0.52 TCGA-AC-A23H-01 15 75801285 75801285 G C PTPN9 Silent p.L204L 0.26 TCGA-AC-A23H-01 15 76152225 76152225 C G UBE2Q2 Missense_Mutation p.Q97E 0.24 tolerated(0.11) possibly_damaging(0.556) TCGA-AC-A23H-01 15 77406874 77406874 C T PEAK1 Missense_Mutation p.R1622Q 0.25 tolerated(0.42) benign(0.051) TCGA-AC-A23H-01 15 77407121 77407121 C T PEAK1 Missense_Mutation p.E1540K 0.15 tolerated(0.13) benign(0.43) TCGA-AC-A23H-01 15 77907324 77907324 C G LINGO1 Missense_Mutation p.E309Q 0.25 tolerated(0.12) benign(0.001) TCGA-AC-A23H-01 15 77907918 77907918 C T LINGO1 Missense_Mutation p.E111K 0.37 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 15 78575650 78575650 C A WDR61 3'UTR 0.36 TCGA-AC-A23H-01 15 78789521 78789521 G C IREB2 Missense_Mutation p.L883F 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 15 78819958 78819958 C T HYKK Intron 0.35 TCGA-AC-A23H-01 15 78882189 78882189 C G CHRNA5 Missense_Mutation p.I152M 0.48 deleterious(0.02) possibly_damaging(0.653) TCGA-AC-A23H-01 15 78911198 78911198 C T CHRNA3 Missense_Mutation p.E48K 0.22 tolerated(1) benign(0.186) TCGA-AC-A23H-01 15 79183909 79183909 G A MORF4L1 Missense_Mutation p.E184K 0.25 deleterious(0.01) possibly_damaging(0.734) TCGA-AC-A23H-01 15 79282575 79282575 C T RASGRF1 Missense_Mutation p.E1074K 0.25 tolerated(0.13) benign(0.014) TCGA-AC-A23H-01 15 79296384 79296384 G A RASGRF1 Missense_Mutation p.R753C 0.26 deleterious(0) probably_damaging(0.969) TCGA-AC-A23H-01 15 79312447 79312447 C G RASGRF1 Splice_Site p.X515_splice 0.32 TCGA-AC-A23H-01 15 79320179 79320179 C T RASGRF1 Missense_Mutation p.E429K 0.43 deleterious(0) probably_damaging(0.918) TCGA-AC-A23H-01 15 79341906 79341906 C G RASGRF1 Missense_Mutation p.E186Q 0.16 deleterious(0.03) benign(0.394) TCGA-AC-A23H-01 15 79586995 79586995 C T ANKRD34C Missense_Mutation p.H457Y 0.17 deleterious(0) benign(0.036) TCGA-AC-A23H-01 15 81517852 81517852 G C IL16 Missense_Mutation p.D38H 0.27 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 15 83218294 83218294 C T CPEB1 Missense_Mutation p.E439K 0.13 deleterious(0.04) probably_damaging(0.987) TCGA-AC-A23H-01 15 83328413 83328413 C G AP3B2 Missense_Mutation p.D1050H 0.37 deleterious(0.01) possibly_damaging(0.861) TCGA-AC-A23H-01 15 83677321 83677321 C G C15orf40 Missense_Mutation p.K115N 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-AC-A23H-01 15 84373150 84373150 G T ADAMTSL3 Nonsense_Mutation p.E27* 0.25 TCGA-AC-A23H-01 15 84639380 84639380 G C ADAMTSL3 Missense_Mutation p.E879Q 0.09 tolerated(0.22) benign(0.18) TCGA-AC-A23H-01 15 85164113 85164113 G C ZSCAN2 Missense_Mutation p.K229N 0.26 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 15 85326738 85326738 C T ZNF592 Missense_Mutation p.H278Y 0.23 tolerated(0.13) probably_damaging(0.997) TCGA-AC-A23H-01 15 85400440 85400440 C T ALPK3 Missense_Mutation p.S1026L 0.28 tolerated_low_confidence(0.16) benign(0.006) TCGA-AC-A23H-01 15 85401522 85401522 G C ALPK3 Missense_Mutation p.E1387Q 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-AC-A23H-01 15 85410545 85410545 C T ALPK3 Intron 0.10 TCGA-AC-A23H-01 15 85626786 85626786 G A PDE8A Splice_Site p.X183_splice 0.18 TCGA-AC-A23H-01 15 89402288 89402288 G C ACAN Missense_Mutation p.E2158Q 0.33 deleterious(0.04) possibly_damaging(0.474) TCGA-AC-A23H-01 15 89817505 89817505 C T FANCI Missense_Mutation p.S361L 0.21 tolerated(0.11) benign(0.033) TCGA-AC-A23H-01 15 90166915 90166915 C G TICRR Missense_Mutation p.S1125C 0.16 deleterious(0.03) benign(0.006) TCGA-AC-A23H-01 15 90177087 90177087 C T KIF7 Missense_Mutation p.E808K 0.17 tolerated(0.78) probably_damaging(0.949) TCGA-AC-A23H-01 15 90226631 90226631 G C PEX11A Missense_Mutation p.Q241E 0.32 tolerated(0.23) benign(0.066) TCGA-AC-A23H-01 15 90248831 90248831 C G WDR93 Silent p.V181V 0.22 TCGA-AC-A23H-01 15 90281388 90281388 C G WDR93 Missense_Mutation p.P628A 0.22 deleterious(0.02) benign(0.243) TCGA-AC-A23H-01 15 90627406 90627406 G A IDH2 3'UTR 0.24 TCGA-AC-A23H-01 15 90760783 90760783 C G SEMA4B Silent p.L90L 0.22 TCGA-AC-A23H-01 15 91026794 91026794 G A IQGAP1 Missense_Mutation p.E1253K 0.24 tolerated(0.66) benign(0.002) TCGA-AC-A23H-01 15 91293048 91293048 C G BLM Missense_Mutation p.Q184E 0.25 tolerated(0.06) benign(0.254) TCGA-AC-A23H-01 15 92647641 92647641 C G SLCO3A1 Nonsense_Mutation p.S293* 0.18 TCGA-AC-A23H-01 15 92988122 92988122 G A ST8SIA2 Missense_Mutation p.A269T 0.29 probably_damaging(0.934) TCGA-AC-A23H-01 15 93552539 93552539 C T CHD2 Silent p.I1526I 0.24 TCGA-AC-A23H-01 15 93567777 93567777 C G CHD2 Missense_Mutation p.L1777V 0.28 tolerated_low_confidence(0.11) benign(0.097) TCGA-AC-A23H-01 15 93616198 93616198 G C RGMA Nonsense_Mutation p.S34* 0.14 TCGA-AC-A23H-01 15 99192865 99192865 C G IGF1R Missense_Mutation p.L19V 0.24 tolerated(0.29) benign(0.002) TCGA-AC-A23H-01 15 99465606 99465606 G C IGF1R Missense_Mutation p.E811Q 0.26 tolerated(0.7) benign(0.004) TCGA-AC-A23H-01 15 99892629 99892629 G A LRRC28 Silent p.L216L 0.30 TCGA-AC-A23H-01 15 99926511 99926511 C G LRRC28 3'UTR 0.40 TCGA-AC-A23H-01 16 10855381 10855381 G A NUBP1 Intron 0.22 TCGA-AC-A23H-01 16 11846602 11846602 C T ZC3H7A Silent p.E883E 0.22 TCGA-AC-A23H-01 16 1279433 1279433 G A TPSB2 Silent p.L86L 0.12 TCGA-AC-A23H-01 16 1279626 1279626 G A TPSB2 Silent p.F58F 0.11 TCGA-AC-A23H-01 16 133185 133185 C T MPG Silent p.F150F 0.29 TCGA-AC-A23H-01 16 1395996 1395996 G A BAIAP3 Missense_Mutation p.E775K 0.19 tolerated(0.12) benign(0.066) TCGA-AC-A23H-01 16 1470078 1470078 G C C16orf91 Missense_Mutation p.L313V 0.18 deleterious_low_confidence(0) benign(0.001) TCGA-AC-A23H-01 16 1484493 1484493 C T CCDC154 Silent p.L647L 0.12 TCGA-AC-A23H-01 16 1486459 1486459 C G CCDC154 Missense_Mutation p.E501Q 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 14935257 14935257 G A NOMO1 Nonsense_Mutation p.W98* 0.30 TCGA-AC-A23H-01 16 14951376 14951376 G C NOMO1 Missense_Mutation p.D362H 0.20 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 16 14978319 14978319 G C NOMO1 Missense_Mutation p.E1068Q 0.27 tolerated(0.07) possibly_damaging(0.496) TCGA-AC-A23H-01 16 1505783 1505783 G C CLCN7 Missense_Mutation p.F310L 0.14 deleterious(0) probably_damaging(0.914) TCGA-AC-A23H-01 16 15159159 15159159 C G RRN3 Missense_Mutation p.R541S 0.26 tolerated(0.27) probably_damaging(0.987) TCGA-AC-A23H-01 16 1547069 1547069 C T TELO2 Nonsense_Mutation p.Q216* 0.14 TCGA-AC-A23H-01 16 1557647 1557647 C T TELO2 Silent p.L779L 0.15 TCGA-AC-A23H-01 16 15705471 15705471 C G KIAA0430 Missense_Mutation p.E1199Q 0.16 deleterious(0.02) possibly_damaging(0.874) TCGA-AC-A23H-01 16 1584286 1584286 C T TMEM204 Nonsense_Mutation p.Q4* 0.42 TCGA-AC-A23H-01 16 15973705 15973705 G A FOPNL Silent p.L89L 0.30 TCGA-AC-A23H-01 16 15982447 15982447 C T FOPNL 5'UTR 0.17 TCGA-AC-A23H-01 16 1607933 1607933 C T IFT140 Intron 0.11 TCGA-AC-A23H-01 16 16284023 16284023 G A ABCC6 Silent p.L545L 0.35 TCGA-AC-A23H-01 16 16315481 16315481 C A ABCC6 Intron 0.21 TCGA-AC-A23H-01 16 1639617 1639617 C T IFT140 Missense_Mutation p.E267K 0.14 deleterious(0) possibly_damaging(0.792) TCGA-AC-A23H-01 16 1702563 1702563 G C CRAMP1L Missense_Mutation p.K298N 0.12 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 16 1703056 1703056 G C CRAMP1L Missense_Mutation p.Q312H 0.16 deleterious(0.01) benign(0.317) TCGA-AC-A23H-01 16 17202709 17202709 G A XYLT1 Missense_Mutation p.S908L 0.31 tolerated(0.05) benign(0.158) TCGA-AC-A23H-01 16 1723944 1723944 C T CRAMP1L Silent p.F1236F 0.35 TCGA-AC-A23H-01 16 1756392 1756392 G A MAPK8IP3 Missense_Mutation p.D18N 0.19 deleterious(0.04) benign(0.04) TCGA-AC-A23H-01 16 1756461 1756461 G C MAPK8IP3 Missense_Mutation p.E41Q 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 1822500 1822500 C T MRPS34 Missense_Mutation p.E127K 0.19 tolerated(0.5) benign(0.009) TCGA-AC-A23H-01 16 18553950 18553950 G A NOMO2 Missense_Mutation p.S280F 0.25 tolerated(0.05) benign(0.264) TCGA-AC-A23H-01 16 18823420 18823420 G C SMG1 Missense_Mutation p.Q3551E 0.25 tolerated(0.63) probably_damaging(0.93) TCGA-AC-A23H-01 16 18845567 18845567 C T SMG1 Missense_Mutation p.E2842K 0.55 tolerated(0.52) benign(0.079) TCGA-AC-A23H-01 16 18869592 18869592 G A SMG1 Silent p.F1378F 0.18 TCGA-AC-A23H-01 16 18887491 18887491 G T SMG1 Silent p.L615L 0.30 TCGA-AC-A23H-01 16 19056734 19056734 G A TMC7 Silent p.V509V 0.20 TCGA-AC-A23H-01 16 19067985 19067985 G C TMC7 Missense_Mutation p.E665Q 0.20 tolerated(0.29) possibly_damaging(0.556) TCGA-AC-A23H-01 16 19455423 19455423 C T TMC5 Missense_Mutation p.S270L 0.16 tolerated(0.08) benign(0.007) TCGA-AC-A23H-01 16 19883943 19883943 G A GPRC5B Silent p.L75L 0.20 TCGA-AC-A23H-01 16 19884141 19884141 C T GPRC5B Missense_Mutation p.M9I 0.33 deleterious(0.01) probably_damaging(0.958) TCGA-AC-A23H-01 16 2002910 2002910 G A RPL3L Silent p.L110L 0.17 TCGA-AC-A23H-01 16 2028217 2028217 G C TBL3 Missense_Mutation p.Q710H 0.27 tolerated(0.07) possibly_damaging(0.734) TCGA-AC-A23H-01 16 20328532 20328532 C G GP2 Intron 0.18 TCGA-AC-A23H-01 16 20335310 20335310 C A GP2 Silent p.L121L 0.23 TCGA-AC-A23H-01 16 20352646 20352646 G A UMOD Silent p.I448I 0.12 TCGA-AC-A23H-01 16 20476892 20476892 G T ACSM2A Missense_Mutation p.K77N 0.21 tolerated(0.34) benign(0.002) TCGA-AC-A23H-01 16 20809729 20809729 G C ERI2 Missense_Mutation p.P465A 0.22 tolerated(0.5) benign(0.005) TCGA-AC-A23H-01 16 20966328 20966328 C G DNAH3 Missense_Mutation p.Q3626H 0.29 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 16 21151873 21151873 G C DNAH3 Missense_Mutation p.S227C 0.55 deleterious(0) possibly_damaging(0.572) TCGA-AC-A23H-01 16 21210926 21210926 G T ZP2 Missense_Mutation p.S631Y 0.27 tolerated(0.1) possibly_damaging(0.696) TCGA-AC-A23H-01 16 2135232 2135232 C T TSC2 Missense_Mutation p.S1524L 0.15 tolerated(0.14) benign(0) TCGA-AC-A23H-01 16 2140193 2140193 G A PKD1 Silent p.F4149F 0.14 TCGA-AC-A23H-01 16 2152430 2152430 G A PKD1 Silent p.F3051F 0.22 TCGA-AC-A23H-01 16 21974112 21974112 C T UQCRC2 Silent p.V140V 0.20 TCGA-AC-A23H-01 16 22111530 22111530 G A VWA3A Missense_Mutation p.E81K 0.16 tolerated(0.69) benign(0.005) TCGA-AC-A23H-01 16 22111531 22111531 A T VWA3A Missense_Mutation p.E81V 0.16 deleterious(0.03) benign(0.197) TCGA-AC-A23H-01 16 22358745 22358745 A C CDR2 Missense_Mutation p.H302Q 0.21 tolerated(0.58) benign(0.001) TCGA-AC-A23H-01 16 22358753 22358753 C G CDR2 Missense_Mutation p.E300Q 0.22 tolerated(0.13) benign(0.221) TCGA-AC-A23H-01 16 2278450 2278450 C T E4F1 Nonsense_Mutation p.Q79* 0.10 TCGA-AC-A23H-01 16 2290147 2290147 C G ECI1 Splice_Site p.X248_splice 0.63 TCGA-AC-A23H-01 16 23080829 23080829 G A USP31 Missense_Mutation p.S866L 0.20 tolerated(0.06) benign(0.029) TCGA-AC-A23H-01 16 23085069 23085069 G A USP31 Missense_Mutation p.S770L 0.19 deleterious(0.03) probably_damaging(0.96) TCGA-AC-A23H-01 16 23098496 23098496 G A USP31 Silent p.F513F 0.26 TCGA-AC-A23H-01 16 23226800 23226800 G A SCNN1G 3'UTR 0.43 TCGA-AC-A23H-01 16 2331100 2331100 C T ABCA3 Silent p.L1429L 0.19 TCGA-AC-A23H-01 16 2335471 2335471 G C ABCA3 Missense_Mutation p.S1152C 0.26 tolerated(0.12) benign(0.053) TCGA-AC-A23H-01 16 2336768 2336768 G A ABCA3 Missense_Mutation p.H1069Y 0.15 deleterious(0.01) benign(0.001) TCGA-AC-A23H-01 16 23464361 23464361 C A COG7 5'UTR 0.19 TCGA-AC-A23H-01 16 2353993 2353993 G C ABCA3 Missense_Mutation p.Q482E 0.12 deleterious(0.01) benign(0.206) TCGA-AC-A23H-01 16 24135164 24135164 G C PRKCB Missense_Mutation p.K309N 0.21 tolerated(0.14) benign(0.012) TCGA-AC-A23H-01 16 24202522 24202522 G C PRKCB Missense_Mutation p.E612Q 0.24 tolerated(0.18) benign(0.082) TCGA-AC-A23H-01 16 24574557 24574557 G T RBBP6 Missense_Mutation p.A443S 0.20 tolerated_low_confidence(0.17) benign(0.344) TCGA-AC-A23H-01 16 24804841 24804841 G C TNRC6A Missense_Mutation p.D1075H 0.31 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 24953404 24953404 G C ARHGAP17 Nonsense_Mutation p.S465* 0.25 TCGA-AC-A23H-01 16 2569734 2569734 C G ATP6V0C Silent p.L152L 0.18 TCGA-AC-A23H-01 16 2580357 2580357 C A CEMP1 Missense_Mutation p.D240Y 0.21 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-AC-A23H-01 16 2636865 2636865 G A PDPK1 Silent p.L438L 0.15 TCGA-AC-A23H-01 16 27761260 27761260 C G KIAA0556 Silent p.L993L 0.22 TCGA-AC-A23H-01 16 27761457 27761457 C A KIAA0556 Missense_Mutation p.S1059Y 0.34 tolerated(1) benign(0.029) TCGA-AC-A23H-01 16 2812220 2812220 C G SRRM2 Missense_Mutation p.S564C 0.14 unknown(0) TCGA-AC-A23H-01 16 2814642 2814642 G C SRRM2 Missense_Mutation p.M1371I 0.19 unknown(0) TCGA-AC-A23H-01 16 2815463 2815463 G A SRRM2 Missense_Mutation p.R1645K 0.15 unknown(0) TCGA-AC-A23H-01 16 2819084 2819084 C G SRRM2 Missense_Mutation p.S2607C 0.13 probably_damaging(0.971) TCGA-AC-A23H-01 16 2819117 2819117 C T SRRM2 Missense_Mutation p.S2618F 0.13 probably_damaging(0.962) TCGA-AC-A23H-01 16 28508466 28508466 G C APOBR Missense_Mutation p.E702Q 0.16 tolerated(0.05) benign(0.008) TCGA-AC-A23H-01 16 28617453 28617453 C G SULT1A1 Missense_Mutation p.K233N 0.17 deleterious(0) possibly_damaging(0.837) TCGA-AC-A23H-01 16 2868967 2868967 G A PRSS21 Missense_Mutation p.E183K 0.20 tolerated(1) benign(0.017) TCGA-AC-A23H-01 16 28846921 28846921 C G ATXN2L Missense_Mutation p.L913V 0.17 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 16 28854406 28854406 C G TUFM Missense_Mutation p.E420Q 0.16 deleterious(0.01) probably_damaging(0.966) TCGA-AC-A23H-01 16 28857237 28857237 C T TUFM Silent p.T81T 0.21 TCGA-AC-A23H-01 16 28878735 28878735 G C SH2B1 Missense_Mutation p.E341D 0.20 tolerated(0.89) probably_damaging(0.996) TCGA-AC-A23H-01 16 28890878 28890878 C T ATP2A1 Missense_Mutation p.L65F 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 28935841 28935841 C G RABEP2 Missense_Mutation p.E53Q 0.26 deleterious(0) benign(0.403) TCGA-AC-A23H-01 16 28986584 28986584 G A SPNS1 Missense_Mutation p.E38K 0.28 tolerated(0.71) benign(0.014) TCGA-AC-A23H-01 16 29127471 29127471 G C RP11-426C22.5 RNA 0.27 TCGA-AC-A23H-01 16 29367118 29367118 C G SNX29P2 RNA 0.18 TCGA-AC-A23H-01 16 29820003 29820003 C G MAZ Missense_Mutation p.S407W 0.31 deleterious(0) possibly_damaging(0.581) TCGA-AC-A23H-01 16 29831133 29831133 C G PAGR1 3'UTR 0.33 TCGA-AC-A23H-01 16 2988357 2988357 C T FLYWCH1 Silent p.I649I 0.25 TCGA-AC-A23H-01 16 29990153 29990153 G T TAOK2 Missense_Mutation p.D114Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 16 30007620 30007620 C T HIRIP3 5'UTR 0.18 TCGA-AC-A23H-01 16 30594472 30594472 G A ZNF785 Silent p.F209F 0.37 TCGA-AC-A23H-01 16 3065666 3065666 G A CLDN6 Silent p.L119L 0.19 TCGA-AC-A23H-01 16 30666207 30666207 C T PRR14 Missense_Mutation p.R306W 0.55 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 3073236 3073236 G C HCFC1R1 Silent p.L93L 0.16 TCGA-AC-A23H-01 16 30735969 30735969 C G SRCAP Missense_Mutation p.P1742A 0.22 benign(0.078) TCGA-AC-A23H-01 16 3073917 3073917 C T HCFC1R1 Missense_Mutation p.R9Q 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-AC-A23H-01 16 30740359 30740359 C T SRCAP Missense_Mutation p.H1911Y 0.24 possibly_damaging(0.775) TCGA-AC-A23H-01 16 30775646 30775646 G C RNF40 Missense_Mutation p.E197Q 0.23 tolerated(0.98) benign(0.024) TCGA-AC-A23H-01 16 31004170 31004170 G A STX1B Missense_Mutation p.S280L 0.20 tolerated(0.17) benign(0.009) TCGA-AC-A23H-01 16 31045340 31045340 G A STX4 Missense_Mutation p.D13N 0.25 tolerated(0.24) benign(0.001) TCGA-AC-A23H-01 16 3108209 3108209 C T MMP25 Missense_Mutation p.S345F 0.18 deleterious(0.01) probably_damaging(0.911) TCGA-AC-A23H-01 16 31090365 31090365 C G ZNF646 Missense_Mutation p.S907C 0.20 deleterious(0.03) possibly_damaging(0.678) TCGA-AC-A23H-01 16 31153200 31153200 G C PRSS36 Missense_Mutation p.L535V 0.30 tolerated(0.62) probably_damaging(0.93) TCGA-AC-A23H-01 16 31371337 31371337 C A ITGAX Missense_Mutation p.H220N 0.18 tolerated(0.57) benign(0) TCGA-AC-A23H-01 16 31374687 31374687 C A ITGAX Missense_Mutation p.H568N 0.24 deleterious(0.01) benign(0.074) TCGA-AC-A23H-01 16 31473254 31473254 C T ARMC5 Nonsense_Mutation p.Q163* 0.29 TCGA-AC-A23H-01 16 31473948 31473948 C G ARMC5 Missense_Mutation p.I360M 0.55 tolerated(0.06) possibly_damaging(0.628) TCGA-AC-A23H-01 16 31487873 31487873 C G TGFB1I1 Missense_Mutation p.F320L 0.24 tolerated(0.06) possibly_damaging(0.557) TCGA-AC-A23H-01 16 3274081 3274081 C T ZNF200 Silent p.E333E 0.19 TCGA-AC-A23H-01 16 3274435 3274435 C A ZNF200 Missense_Mutation p.M215I 0.15 tolerated(0.25) benign(0.001) TCGA-AC-A23H-01 16 3274506 3274506 C A ZNF200 Missense_Mutation p.V192F 0.19 tolerated(0.11) benign(0.408) TCGA-AC-A23H-01 16 32890776 32890776 G A SLC6A10P RNA 0.18 TCGA-AC-A23H-01 16 3339442 3339442 G A ZNF263 Silent p.E312E 0.35 TCGA-AC-A23H-01 16 343607 343607 G A AXIN1 Silent p.F689F 0.20 TCGA-AC-A23H-01 16 3532577 3532577 G C NAA60 Missense_Mutation p.E106Q 0.21 tolerated(0.16) benign(0.065) TCGA-AC-A23H-01 16 3591874 3591874 A G NLRC3 Missense_Mutation p.I1096T 0.45 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 16 3602207 3602207 C T NLRC3 Silent p.L826L 0.29 TCGA-AC-A23H-01 16 3632493 3632493 C T SLX4 Silent p.L1785L 0.12 TCGA-AC-A23H-01 16 3721737 3721737 C G TRAP1 Missense_Mutation p.E407D 0.50 tolerated(1) benign(0.009) TCGA-AC-A23H-01 16 4015828 4015828 C T ADCY9 Missense_Mutation p.G1337E 0.20 tolerated_low_confidence(0.45) benign(0.006) TCGA-AC-A23H-01 16 4016694 4016694 C T ADCY9 Silent p.Q1048Q 0.18 TCGA-AC-A23H-01 16 4024709 4024709 G C ADCY9 Missense_Mutation p.S944C 0.21 tolerated(0.27) benign(0.325) TCGA-AC-A23H-01 16 4033264 4033264 G A ADCY9 Silent p.L830L 0.30 TCGA-AC-A23H-01 16 4385105 4385105 C G GLIS2 Silent p.V189V 0.30 TCGA-AC-A23H-01 16 4390256 4390256 G T CORO7-PAM16 3'UTR 0.23 TCGA-AC-A23H-01 16 4412094 4412094 G C CORO7 Silent p.L490L 0.24 TCGA-AC-A23H-01 16 4606738 4606738 A C C16orf96 Missense_Mutation p.H83P 0.28 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 16 46782142 46782142 G A MYLK3 5'UTR 0.17 TCGA-AC-A23H-01 16 46956200 46956200 G T GPT2 Nonsense_Mutation p.E362* 0.28 TCGA-AC-A23H-01 16 48221246 48221246 G C ABCC11 Silent p.L933L 0.34 TCGA-AC-A23H-01 16 48295398 48295398 G A LONP2 Missense_Mutation p.E263K 0.23 tolerated(0.25) benign(0.05) TCGA-AC-A23H-01 16 4873824 4873824 C T GLYR1 Missense_Mutation p.E208K 0.45 tolerated(0.51) benign(0.002) TCGA-AC-A23H-01 16 4925414 4925414 G C UBN1 Silent p.V1001V 0.21 TCGA-AC-A23H-01 16 50138963 50138963 G A HEATR3 Silent p.L678L 0.24 TCGA-AC-A23H-01 16 50344681 50344681 G A ADCY7 Silent p.L748L 0.31 TCGA-AC-A23H-01 16 50373907 50373907 C G BRD7 Missense_Mutation p.G228R 0.34 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 5077330 5077330 C T NAGPA Missense_Mutation p.E409K 0.21 benign(0.066) TCGA-AC-A23H-01 16 5105257 5105257 G A C16orf89 Silent p.F286F 0.24 TCGA-AC-A23H-01 16 5108498 5108498 C T C16orf89 Missense_Mutation p.R208K 0.21 tolerated(0.34) benign(0.138) TCGA-AC-A23H-01 16 53348426 53348426 C T CHD9 Missense_Mutation p.H2438Y 0.33 unknown(0) TCGA-AC-A23H-01 16 53922804 53922804 G A FTO Missense_Mutation p.D394N 0.29 tolerated(0.1) benign(0.052) TCGA-AC-A23H-01 16 55523672 55523672 G C MMP2 Missense_Mutation p.K372N 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-AC-A23H-01 16 56624890 56624890 G A MT3 3'UTR 0.23 TCGA-AC-A23H-01 16 56643339 56643339 G A MT2A 3'UTR 0.28 TCGA-AC-A23H-01 16 56670036 56670036 C T MT1M 3'Flank 0.42 TCGA-AC-A23H-01 16 56916369 56916369 C G SLC12A3 Missense_Mutation p.I543M 0.31 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 16 57003592 57003592 G C CETP Silent p.L146L 0.31 TCGA-AC-A23H-01 16 57111211 57111211 G C NLRC5 Missense_Mutation p.L1613F 0.24 tolerated(0.09) probably_damaging(1) TCGA-AC-A23H-01 16 57416325 57416325 C G CX3CL1 Missense_Mutation p.S192C 0.33 deleterious(0) probably_damaging(0.942) TCGA-AC-A23H-01 16 57713199 57713199 C T GPR97 Silent p.V201V 0.31 TCGA-AC-A23H-01 16 57935527 57935527 C T CNGB1 Missense_Mutation p.E933K 0.21 deleterious(0) possibly_damaging(0.685) TCGA-AC-A23H-01 16 57989179 57989179 C T CNGB1 Intron 0.33 TCGA-AC-A23H-01 16 58148822 58148822 G A C16orf80 Silent p.I156I 0.26 TCGA-AC-A23H-01 16 58314069 58314069 G A PRSS54 3'UTR 0.70 TCGA-AC-A23H-01 16 58712733 58712733 C G SLC38A7 Missense_Mutation p.E112D 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-AC-A23H-01 16 65345333 65345333 G A LINC00922 RNA 0.25 TCGA-AC-A23H-01 16 66762101 66762101 C T DYNC1LI2 Intron 0.22 TCGA-AC-A23H-01 16 66809130 66809130 G A CCDC79 Silent p.D334D 0.15 TCGA-AC-A23H-01 16 66819740 66819740 C G CCDC79 Missense_Mutation p.E217Q 0.23 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 16 66842961 66842961 G C NAE1 Missense_Mutation p.L390V 0.20 tolerated(0.05) possibly_damaging(0.515) TCGA-AC-A23H-01 16 66951570 66951570 C G CDH16 Missense_Mutation p.G35A 0.22 deleterious(0) possibly_damaging(0.899) TCGA-AC-A23H-01 16 66956219 66956219 G A RRAD Silent p.F229F 0.10 TCGA-AC-A23H-01 16 67196909 67196909 G A FBXL8 Missense_Mutation p.R104Q 0.38 tolerated(0.6) possibly_damaging(0.602) TCGA-AC-A23H-01 16 67233098 67233098 G C ELMO3 Missense_Mutation p.E10Q 0.28 deleterious_low_confidence(0) benign(0.009) TCGA-AC-A23H-01 16 67263608 67263608 C G FHOD1 Missense_Mutation p.L1142F 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 16 67265426 67265426 C T FHOD1 Silent p.L804L 0.14 TCGA-AC-A23H-01 16 67319389 67319389 G T PLEKHG4 Nonsense_Mutation p.E798* 0.11 TCGA-AC-A23H-01 16 67325586 67325586 G C KCTD19 Silent p.L791L 0.13 TCGA-AC-A23H-01 16 67412590 67412590 G A LRRC36 Silent p.V635V 0.24 TCGA-AC-A23H-01 16 67418913 67418913 C A LRRC36 Missense_Mutation p.S729Y 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A23H-01 16 67575861 67575861 C T FAM65A Missense_Mutation p.S411L 0.18 deleterious(0) possibly_damaging(0.453) TCGA-AC-A23H-01 16 67671862 67671862 G A CTCF 3'UTR 0.32 TCGA-AC-A23H-01 16 67679969 67679969 G A RLTPR Missense_Mutation p.E79K 0.11 tolerated(0.33) benign(0.186) TCGA-AC-A23H-01 16 67696312 67696312 C G PARD6A Missense_Mutation p.S268C 0.42 deleterious(0.01) possibly_damaging(0.713) TCGA-AC-A23H-01 16 67696565 67696565 C T PARD6A 3'UTR 0.44 TCGA-AC-A23H-01 16 67696961 67696961 C T ENKD1 3'UTR 0.42 TCGA-AC-A23H-01 16 67701778 67701778 C G C16orf86 Intron 0.21 TCGA-AC-A23H-01 16 67719501 67719501 C T GFOD2 Missense_Mutation p.E40K 0.25 tolerated(0.16) possibly_damaging(0.811) TCGA-AC-A23H-01 16 67986291 67986291 G A SLC12A4 Missense_Mutation p.S240L 0.19 tolerated(0.06) benign(0.003) TCGA-AC-A23H-01 16 68071937 68071937 A C DUS2 Missense_Mutation p.N4T 0.16 tolerated_low_confidence(0.06) benign(0.002) TCGA-AC-A23H-01 16 68264341 68264341 G C ESRP2 Missense_Mutation p.P672R 0.11 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 16 68598488 68598488 C T ZFP90 Nonsense_Mutation p.Q600* 0.18 TCGA-AC-A23H-01 16 69056788 69056788 G C TANGO6 Missense_Mutation p.R967T 0.44 deleterious(0) possibly_damaging(0.451) TCGA-AC-A23H-01 16 69959378 69959378 C G WWP2 Missense_Mutation p.P409A 0.15 tolerated(0.29) benign(0.11) TCGA-AC-A23H-01 16 69971129 69971129 G C WWP2 Missense_Mutation p.E742D 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-AC-A23H-01 16 70057293 70057293 C T PDXDC2P RNA 0.15 TCGA-AC-A23H-01 16 70295061 70295061 C G AARS Splice_Site p.X558_splice 0.20 TCGA-AC-A23H-01 16 70582279 70582279 G C SF3B3 Missense_Mutation p.E446Q 0.21 deleterious(0.04) possibly_damaging(0.859) TCGA-AC-A23H-01 16 70595653 70595653 G C SF3B3 Missense_Mutation p.E752Q 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-AC-A23H-01 16 70694004 70694004 C T IL34 Missense_Mutation p.P215S 0.28 tolerated_low_confidence(0.39) benign(0.349) TCGA-AC-A23H-01 16 70722131 70722131 C G VAC14 Intron 0.28 TCGA-AC-A23H-01 16 70863620 70863620 C T HYDIN Silent p.E4671E 0.18 TCGA-AC-A23H-01 16 709364 709364 G A WDR90 Missense_Mutation p.E1058K 0.46 tolerated(0.56) benign(0.003) TCGA-AC-A23H-01 16 70989399 70989399 C G HYDIN Silent p.L2065L 0.24 TCGA-AC-A23H-01 16 70998635 70998635 C T HYDIN Silent p.E1928E 0.14 TCGA-AC-A23H-01 16 70998650 70998650 C T HYDIN Silent p.E1923E 0.12 TCGA-AC-A23H-01 16 71127739 71127739 C A HYDIN Missense_Mutation p.G476V 0.11 probably_damaging(0.998) TCGA-AC-A23H-01 16 71171212 71171212 C T HYDIN Missense_Mutation p.M295I 0.49 benign(0.251) TCGA-AC-A23H-01 16 71319328 71319328 G A CMTR2 Missense_Mutation p.H166Y 0.16 deleterious(0.05) benign(0.067) TCGA-AC-A23H-01 16 71319827 71319827 C G CMTR2 5'UTR 0.19 TCGA-AC-A23H-01 16 715268 715268 C T WDR90 Intron 0.21 TCGA-AC-A23H-01 16 715318 715318 C T WDR90 Intron 0.33 TCGA-AC-A23H-01 16 715403 715403 C G WDR90 Intron 0.23 TCGA-AC-A23H-01 16 715685 715685 G A WDR90 Missense_Mutation p.E1440K 0.25 deleterious(0.02) probably_damaging(0.94) TCGA-AC-A23H-01 16 71682766 71682766 C T PHLPP2 3'UTR 0.23 TCGA-AC-A23H-01 16 71689143 71689143 C A PHLPP2 Missense_Mutation p.R862M 0.12 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 16 71712799 71712799 G A PHLPP2 Missense_Mutation p.S376F 0.21 deleterious(0) probably_damaging(0.949) TCGA-AC-A23H-01 16 71748425 71748425 C G PHLPP2 Missense_Mutation p.D92H 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-AC-A23H-01 16 71808376 71808376 G C AP1G1 Missense_Mutation p.I107M 0.13 tolerated(0.07) benign(0.024) TCGA-AC-A23H-01 16 72001871 72001871 G A PKD1L3 RNA 0.27 TCGA-AC-A23H-01 16 72013720 72013720 C G PKD1L3 RNA 0.14 TCGA-AC-A23H-01 16 72130173 72130173 C G DHX38 Missense_Mutation p.F39L 0.46 deleterious(0.03) possibly_damaging(0.483) TCGA-AC-A23H-01 16 72130180 72130180 C T DHX38 Missense_Mutation p.P42S 0.13 deleterious(0.02) possibly_damaging(0.857) TCGA-AC-A23H-01 16 72132860 72132860 C T DHX38 Silent p.L267L 0.20 TCGA-AC-A23H-01 16 722563 722563 G A RHOT2 Silent p.L467L 0.15 TCGA-AC-A23H-01 16 72821543 72821543 C G ZFHX3 Silent p.L3544L 0.16 TCGA-AC-A23H-01 16 72829037 72829037 G C ZFHX3 Nonsense_Mutation p.S2515* 0.43 TCGA-AC-A23H-01 16 72830632 72830632 G A ZFHX3 Silent p.L1983L 0.45 TCGA-AC-A23H-01 16 72831142 72831142 C T ZFHX3 Silent p.V1813V 0.39 TCGA-AC-A23H-01 16 73126707 73126707 C G HCCAT5 RNA 0.24 TCGA-AC-A23H-01 16 732065 732065 G A STUB1 Missense_Mutation p.E220K 0.12 deleterious(0.01) possibly_damaging(0.621) TCGA-AC-A23H-01 16 733406 733406 C T JMJD8 Missense_Mutation p.E164K 0.16 tolerated(0.15) probably_damaging(0.93) TCGA-AC-A23H-01 16 735944 735944 G A WDR24 Silent p.L500L 0.23 TCGA-AC-A23H-01 16 74516973 74516973 C T GLG1 Missense_Mutation p.D541N 0.22 tolerated(0.2) benign(0.029) TCGA-AC-A23H-01 16 74670336 74670336 G C RFWD3 Missense_Mutation p.S445C 0.47 deleterious(0) possibly_damaging(0.665) TCGA-AC-A23H-01 16 75256744 75256744 C T CTRB1 Missense_Mutation p.S44F 0.25 deleterious(0.01) possibly_damaging(0.855) TCGA-AC-A23H-01 16 75339017 75339017 C T CFDP1 Missense_Mutation p.M238I 0.41 tolerated(0.16) benign(0.091) TCGA-AC-A23H-01 16 75445788 75445788 C G CFDP1 Missense_Mutation p.E155D 0.16 tolerated(0.11) benign(0.019) TCGA-AC-A23H-01 16 75634191 75634191 C T ADAT1 Missense_Mutation p.E478K 0.42 tolerated(0.19) possibly_damaging(0.497) TCGA-AC-A23H-01 16 766959 766959 G C METRN Missense_Mutation p.E178Q 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-AC-A23H-01 16 77242104 77242104 C A SYCE1L Intron 0.19 TCGA-AC-A23H-01 16 775496 775496 C G CCDC78 Missense_Mutation p.D118H 0.23 tolerated(0.05) benign(0.018) TCGA-AC-A23H-01 16 777584 777584 G T HAGHL Silent p.A25A 0.25 TCGA-AC-A23H-01 16 78011536 78011536 G C VAT1L Missense_Mutation p.E402Q 0.12 deleterious_low_confidence(0.04) probably_damaging(0.954) TCGA-AC-A23H-01 16 78011560 78011560 G A VAT1L Missense_Mutation p.E410K 0.12 tolerated_low_confidence(0.14) benign(0.036) TCGA-AC-A23H-01 16 81214872 81214872 C T PKD1L2 5'UTR 0.42 TCGA-AC-A23H-01 16 81248664 81248664 G A PKD1L2 Missense_Mutation p.S200L 0.16 tolerated(0.68) benign(0.066) TCGA-AC-A23H-01 16 82124603 82124603 G T HSD17B2 Missense_Mutation p.G254V 0.17 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 16 83841681 83841681 G C HSBP1 5'UTR 0.33 TCGA-AC-A23H-01 16 83842947 83842947 G C HSBP1 Missense_Mutation p.K50N 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-AC-A23H-01 16 839544 839544 C T CHTF18 Intron 0.52 TCGA-AC-A23H-01 16 84228660 84228660 C G ADAD2 Intron 0.21 TCGA-AC-A23H-01 16 84472794 84472794 G C ATP2C2 Missense_Mutation p.E337Q 0.23 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 16 84492736 84492736 G C ATP2C2 Missense_Mutation p.E720Q 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 16 84651123 84651123 G C COTL1 Missense_Mutation p.F48L 0.16 tolerated(0.18) benign(0.44) TCGA-AC-A23H-01 16 84812817 84812817 G A USP10 3'UTR 0.25 TCGA-AC-A23H-01 16 87466736 87466736 C G ZCCHC14 Missense_Mutation p.E119Q 0.12 deleterious(0.03) benign(0.135) TCGA-AC-A23H-01 16 87885361 87885361 G A SLC7A5 Silent p.I211I 0.30 TCGA-AC-A23H-01 16 8839861 8839861 C G ABAT Missense_Mutation p.S25C 0.30 tolerated(0.18) benign(0) TCGA-AC-A23H-01 16 8841992 8841992 C T ABAT Nonsense_Mutation p.Q66* 0.33 TCGA-AC-A23H-01 16 8870290 8870290 G C ABAT Silent p.L404L 0.16 TCGA-AC-A23H-01 16 88783103 88783103 C G PIEZO1 Missense_Mutation p.D2264H 0.24 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 16 88786251 88786251 G A PIEZO1 Silent p.L2094L 0.13 TCGA-AC-A23H-01 16 88790298 88790298 G A PIEZO1 Missense_Mutation p.S1439L 0.18 tolerated(0.27) benign(0.004) TCGA-AC-A23H-01 16 88805286 88805286 C T PIEZO1 Intron 0.36 TCGA-AC-A23H-01 16 88808793 88808793 G A PIEZO1 Silent p.L66L 0.26 TCGA-AC-A23H-01 16 88893184 88893184 C G GALNS Silent p.L355L 0.39 TCGA-AC-A23H-01 16 89246631 89246631 G A CDH15 Silent p.L75L 0.17 TCGA-AC-A23H-01 16 89347801 89347801 C T ANKRD11 Missense_Mutation p.E1717K 0.21 probably_damaging(0.993) TCGA-AC-A23H-01 16 89348213 89348213 C T ANKRD11 Missense_Mutation p.M1579I 0.24 probably_damaging(0.958) TCGA-AC-A23H-01 16 89349094 89349094 C A ANKRD11 Nonsense_Mutation p.E1286* 0.17 TCGA-AC-A23H-01 16 89357173 89357173 G A ANKRD11 Missense_Mutation p.A154V 0.10 probably_damaging(0.983) TCGA-AC-A23H-01 16 89590431 89590431 G T SPG7 Nonsense_Mutation p.E132* 0.17 TCGA-AC-A23H-01 16 89651931 89651931 C G CPNE7 Silent p.L292L 0.11 TCGA-AC-A23H-01 16 89696741 89696741 C A DPEP1 5'UTR 0.35 TCGA-AC-A23H-01 16 89712296 89712296 C T CHMP1A 3'UTR 0.12 TCGA-AC-A23H-01 16 89793698 89793698 G A ZNF276 Missense_Mutation p.E340K 0.22 tolerated(0.28) benign(0.293) TCGA-AC-A23H-01 16 89804230 89804230 C T ZNF276 Silent p.I497I 0.34 TCGA-AC-A23H-01 16 89805249 89805249 C T FANCA Intron 0.18 TCGA-AC-A23H-01 16 89828418 89828418 C G FANCA Missense_Mutation p.D931H 0.18 deleterious(0) possibly_damaging(0.861) TCGA-AC-A23H-01 16 89882362 89882362 C T FANCA Missense_Mutation p.E38K 0.36 tolerated(0.15) benign(0.292) TCGA-AC-A23H-01 16 89967130 89967130 G C TCF25 Missense_Mutation p.E437Q 0.19 tolerated(0.25) benign(0.035) TCGA-AC-A23H-01 16 89998976 89998976 C T TUBB3 Intron 0.18 TCGA-AC-A23H-01 16 89998981 89998981 C T TUBB3 Silent p.F20F 0.21 TCGA-AC-A23H-01 16 9002246 9002246 C T USP7 Missense_Mutation p.R408K 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 16 90161019 90161019 G C TUBB8P7 Intron 0.22 TCGA-AC-A23H-01 16 9210739 9210739 A C C16orf72 Silent p.S266S 0.32 TCGA-AC-A23H-01 16 9858040 9858040 C G GRIN2A Missense_Mutation p.D1121H 0.53 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 17 10209931 10209931 C G MYH13 Missense_Mutation p.E1771Q 0.22 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 17 10315996 10315996 G C MYH8 Silent p.L399L 0.24 TCGA-AC-A23H-01 17 10399350 10399350 G C MYH1 Missense_Mutation p.L1696V 0.21 tolerated(0.22) probably_damaging(0.999) TCGA-AC-A23H-01 17 10409217 10409217 G A MYH1 Nonsense_Mutation p.Q696* 0.20 TCGA-AC-A23H-01 17 10535322 10535322 G A MYH3 Silent p.L1656L 0.25 TCGA-AC-A23H-01 17 11568216 11568216 G C DNAH9 Missense_Mutation p.D888H 0.27 benign(0.237) TCGA-AC-A23H-01 17 11584123 11584123 G A DNAH9 Silent p.V1220V 0.20 TCGA-AC-A23H-01 17 12649336 12649336 G T MYOCD Missense_Mutation p.G358C 0.23 tolerated(0.4) probably_damaging(0.951) TCGA-AC-A23H-01 17 12656371 12656371 G C MYOCD Missense_Mutation p.R589T 0.22 tolerated(0.58) benign(0.108) TCGA-AC-A23H-01 17 12659801 12659801 C G MYOCD Missense_Mutation p.S710C 0.22 tolerated(0.1) benign(0.007) TCGA-AC-A23H-01 17 12666389 12666389 G A MYOCD Splice_Site p.X797_splice 0.73 TCGA-AC-A23H-01 17 12666989 12666989 G C MYOCD 3'UTR 0.47 TCGA-AC-A23H-01 17 1371198 1371198 G A MYO1C Missense_Mutation p.S968F 0.15 deleterious(0.02) benign(0.272) TCGA-AC-A23H-01 17 1383839 1383839 G A MYO1C Silent p.F296F 0.34 TCGA-AC-A23H-01 17 14139904 14139904 C G CDRT15 Missense_Mutation p.E83Q 0.23 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AC-A23H-01 17 15234430 15234430 G T TEKT3 Missense_Mutation p.S158Y 0.30 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 17 15642040 15642040 G A TBC1D26 Missense_Mutation p.M131I 0.16 deleterious(0.01) benign(0.444) TCGA-AC-A23H-01 17 1630009 1630009 C T WDR81 Nonsense_Mutation p.Q586* 0.38 TCGA-AC-A23H-01 17 16842691 16842691 C G TNFRSF13B 3'UTR 0.20 TCGA-AC-A23H-01 17 1731172 1731172 G C SMYD4 Missense_Mutation p.H39Q 0.27 tolerated(0.27) benign(0.01) TCGA-AC-A23H-01 17 17398810 17398810 C T RASD1 Missense_Mutation p.E159K 0.46 deleterious(0) probably_damaging(0.916) TCGA-AC-A23H-01 17 18110154 18110154 G C ALKBH5 Missense_Mutation p.E293Q 0.22 deleterious(0.04) possibly_damaging(0.744) TCGA-AC-A23H-01 17 18148916 18148916 C G FLII Missense_Mutation p.D1188H 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 18149711 18149711 G A FLII Silent p.I1039I 0.20 TCGA-AC-A23H-01 17 18281252 18281252 C T EVPLL 5'UTR 0.62 TCGA-AC-A23H-01 17 18565275 18565275 C G ZNF286B Missense_Mutation p.R515T 0.11 deleterious(0) possibly_damaging(0.57) TCGA-AC-A23H-01 17 18565511 18565511 C G ZNF286B Missense_Mutation p.E436D 0.23 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 17 18682062 18682062 G C FBXW10 Missense_Mutation p.L870F 0.17 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 17 18832250 18832250 G C PRPSAP2 Missense_Mutation p.E311Q 0.24 tolerated(0.07) benign(0.128) TCGA-AC-A23H-01 17 18922811 18922811 C T SLC5A10 Silent p.L455L 0.17 TCGA-AC-A23H-01 17 19287718 19287718 C T MFAP4 3'UTR 0.41 TCGA-AC-A23H-01 17 19680999 19680999 G A ULK2 Nonsense_Mutation p.Q983* 0.27 TCGA-AC-A23H-01 17 1968852 1968852 C G SMG6 Missense_Mutation p.E1319D 0.16 tolerated(0.07) benign(0.414) TCGA-AC-A23H-01 17 20239220 20239220 G C RN7SL17P 5'Flank 0.30 TCGA-AC-A23H-01 17 21217590 21217590 C T MAP2K3 3'UTR 0.13 TCGA-AC-A23H-01 17 2227535 2227535 C T TSR1 Silent p.L790L 0.22 TCGA-AC-A23H-01 17 2236308 2236308 C G TSR1 Missense_Mutation p.E418Q 0.31 deleterious(0.03) possibly_damaging(0.598) TCGA-AC-A23H-01 17 2367524 2367524 G C METTL16 Missense_Mutation p.L236V 0.24 tolerated(0.1) possibly_damaging(0.517) TCGA-AC-A23H-01 17 2405551 2405551 G C METTL16 Silent p.S25S 0.20 TCGA-AC-A23H-01 17 2601777 2601777 G C CLUH Missense_Mutation p.I420M 0.19 deleterious(0.03) probably_damaging(0.955) TCGA-AC-A23H-01 17 26099366 26099366 C T NOS2 Missense_Mutation p.G558R 0.24 tolerated(0.69) benign(0.031) TCGA-AC-A23H-01 17 26100210 26100210 C G NOS2 Missense_Mutation p.E512D 0.19 tolerated(0.06) benign(0.184) TCGA-AC-A23H-01 17 26101430 26101430 G A NOS2 Silent p.F443F 0.21 TCGA-AC-A23H-01 17 26116657 26116657 G A NOS2 Silent p.S56S 0.27 TCGA-AC-A23H-01 17 26604384 26604384 G C AC061975.8 5'Flank 0.15 TCGA-AC-A23H-01 17 26695900 26695900 G C VTN Missense_Mutation p.F273L 0.16 deleterious(0.04) probably_damaging(1) TCGA-AC-A23H-01 17 26715448 26715448 G A SARM1 Missense_Mutation p.D571N 0.22 tolerated(0.89) probably_damaging(0.983) TCGA-AC-A23H-01 17 26726705 26726705 G A SLC46A1 Silent p.H449H 0.19 TCGA-AC-A23H-01 17 26726869 26726869 G A SARM1 3'UTR 0.40 TCGA-AC-A23H-01 17 26821425 26821425 G A SLC13A2 Silent p.L450L 0.19 TCGA-AC-A23H-01 17 26965612 26965612 G A KIAA0100 Silent p.S426S 0.19 TCGA-AC-A23H-01 17 27022412 27022412 G C SUPT6H Missense_Mutation p.E1273Q 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-AC-A23H-01 17 27237210 27237210 C G PHF12 Intron 0.23 TCGA-AC-A23H-01 17 27286349 27286349 C T SEZ6 Intron 0.18 TCGA-AC-A23H-01 17 27401886 27401886 C T MYO18A Missense_Mutation p.E2023K 0.17 tolerated(0.25) benign(0.021) TCGA-AC-A23H-01 17 27401901 27401901 C T MYO18A Missense_Mutation p.D2018N 0.16 tolerated_low_confidence(0.25) benign(0) TCGA-AC-A23H-01 17 27421769 27421769 G A MYO18A Silent p.L1537L 0.19 TCGA-AC-A23H-01 17 27438527 27438527 C G MYO18A Missense_Mutation p.E939Q 0.21 tolerated(0.09) benign(0.262) TCGA-AC-A23H-01 17 28296215 28296215 G C EFCAB5 Missense_Mutation p.L199F 0.19 tolerated(0.06) benign(0.178) TCGA-AC-A23H-01 17 28419858 28419858 T G EFCAB5 Missense_Mutation p.Y1409D 0.17 tolerated(0.09) possibly_damaging(0.767) TCGA-AC-A23H-01 17 28548939 28548939 G A SLC6A4 Missense_Mutation p.S13L 0.17 tolerated_low_confidence(0.2) benign(0.001) TCGA-AC-A23H-01 17 28748752 28748752 C T CPD Missense_Mutation p.S403L 0.17 tolerated(0.12) benign(0.196) TCGA-AC-A23H-01 17 28754486 28754486 C G CPD Missense_Mutation p.Q643E 0.17 tolerated(1) benign(0.004) TCGA-AC-A23H-01 17 28778811 28778811 C G CPD Nonsense_Mutation p.S1051* 0.23 TCGA-AC-A23H-01 17 28783324 28783324 C A CPD Missense_Mutation p.H1130N 0.25 tolerated(0.14) probably_damaging(0.999) TCGA-AC-A23H-01 17 29220545 29220545 G C ATAD5 Missense_Mutation p.L1558F 0.21 tolerated(0.7) benign(0.031) TCGA-AC-A23H-01 17 29226586 29226586 G C TEFM Missense_Mutation p.F228L 0.19 tolerated(0.42) benign(0.015) TCGA-AC-A23H-01 17 29645755 29645755 C A EVI2A Nonsense_Mutation p.E116* 0.31 TCGA-AC-A23H-01 17 29657391 29657391 C T NF1 Missense_Mutation p.S1896L 0.27 tolerated(0.05) probably_damaging(0.942) TCGA-AC-A23H-01 17 2966653 2966653 C T OR1D5 Silent p.V83V 0.18 TCGA-AC-A23H-01 17 29844699 29844699 G A RAB11FIP4 Missense_Mutation p.D123N 0.26 tolerated(0.23) benign(0.007) TCGA-AC-A23H-01 17 29852190 29852190 G A RAB11FIP4 Missense_Mutation p.E406K 0.28 deleterious(0) probably_damaging(0.931) TCGA-AC-A23H-01 17 3030046 3030046 G A OR1G1 Missense_Mutation p.S267L 0.55 deleterious(0.02) probably_damaging(0.992) TCGA-AC-A23H-01 17 30348459 30348459 G A LRRC37B Silent p.L98L 0.41 TCGA-AC-A23H-01 17 30348646 30348646 G C LRRC37B Missense_Mutation p.D161H 0.26 deleterious(0.02) probably_damaging(0.953) TCGA-AC-A23H-01 17 31263412 31263412 G A TMEM98 Silent p.K120K 0.32 TCGA-AC-A23H-01 17 3181519 3181519 G A OR3A2 Silent p.I237I 0.24 TCGA-AC-A23H-01 17 3181564 3181564 G A OR3A2 Silent p.L222L 0.21 TCGA-AC-A23H-01 17 3300920 3300920 G C OR1E1 Nonsense_Mutation p.S262* 0.16 TCGA-AC-A23H-01 17 33258059 33258059 C T CCT6B Silent p.Q453Q 0.37 TCGA-AC-A23H-01 17 33310110 33310110 G A LIG3 Nonsense_Mutation p.W29* 0.44 TCGA-AC-A23H-01 17 33319683 33319683 C T LIG3 Missense_Mutation p.S476L 0.37 deleterious(0.01) benign(0.068) TCGA-AC-A23H-01 17 33446176 33446176 G A RAD51D Missense_Mutation p.S33F 0.32 deleterious(0) possibly_damaging(0.873) TCGA-AC-A23H-01 17 3379679 3379679 G T ASPA Nonsense_Mutation p.E76* 0.26 TCGA-AC-A23H-01 17 33802158 33802158 G C SLFN12L Missense_Mutation p.F517L 0.29 tolerated(0.64) benign(0.009) TCGA-AC-A23H-01 17 33802452 33802452 G C SLFN12L Missense_Mutation p.F419L 0.26 tolerated(0.08) possibly_damaging(0.447) TCGA-AC-A23H-01 17 33953832 33953832 G C AP2B1 Silent p.L303L 0.22 TCGA-AC-A23H-01 17 33953856 33953856 G C AP2B1 Missense_Mutation p.Q311H 0.27 deleterious(0) possibly_damaging(0.511) TCGA-AC-A23H-01 17 34233910 34233910 G C AC015849.16 RNA 0.44 TCGA-AC-A23H-01 17 34854096 34854096 C G ZNHIT3 3'Flank 0.22 TCGA-AC-A23H-01 17 34894238 34894238 G A PIGW Missense_Mutation p.E430K 0.29 tolerated(0.74) benign(0.01) TCGA-AC-A23H-01 17 34935847 34935847 G TA GGNBP2 Nonsense_Mutation p.E340* 0.29 TCGA-AC-A23H-01 17 35454054 35454054 C A ACACA Silent p.L2256L 0.32 TCGA-AC-A23H-01 17 35771399 35771399 C T TADA2A 5'UTR 0.32 TCGA-AC-A23H-01 17 3585187 3585187 G A P2RX5 Intron 0.24 TCGA-AC-A23H-01 17 35889936 35889936 C T SYNRG Intron 0.34 TCGA-AC-A23H-01 17 36358874 36358874 C G RP11-1407O15.2 Missense_Mutation p.G273R 0.09 TCGA-AC-A23H-01 17 36454421 36454421 C G MRPL45 Missense_Mutation p.L25V 0.27 tolerated(0.17) possibly_damaging(0.515) TCGA-AC-A23H-01 17 36485641 36485641 C T GPR179 Missense_Mutation p.E1271K 0.36 tolerated(0.19) benign(0.038) TCGA-AC-A23H-01 17 3662793 3662793 G A ITGAE Missense_Mutation p.R257W 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-AC-A23H-01 17 36635701 36635701 C G ARHGAP23 Missense_Mutation p.L821V 0.30 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 17 36871922 36871922 G A MLLT6 Missense_Mutation p.E293K 0.27 tolerated(0.08) unknown(0) TCGA-AC-A23H-01 17 36977230 36977230 C A CWC25 Nonsense_Mutation p.E39* 0.12 TCGA-AC-A23H-01 17 36977240 36977240 C T CWC25 Silent p.K35K 0.14 TCGA-AC-A23H-01 17 37006660 37006660 C G RPL23 Missense_Mutation p.E99Q 0.29 deleterious(0.01) possibly_damaging(0.563) TCGA-AC-A23H-01 17 37107921 37107921 C T FBXO47 Missense_Mutation p.E177K 0.24 deleterious(0.01) benign(0.174) TCGA-AC-A23H-01 17 3721701 3721701 G C C17orf85 Missense_Mutation p.S389C 0.23 deleterious(0.04) benign(0.443) TCGA-AC-A23H-01 17 3732634 3732634 G C C17orf85 Missense_Mutation p.I128M 0.25 deleterious(0) possibly_damaging(0.632) TCGA-AC-A23H-01 17 37649055 37649055 G A CDK12 Silent p.G720G 0.05 TCGA-AC-A23H-01 17 37682245 37682245 A C CDK12 Missense_Mutation p.M1146L 0.04 benign(0.018) TCGA-AC-A23H-01 17 37687232 37687232 C G CDK12 Missense_Mutation p.S1379C 0.08 probably_damaging(0.987) TCGA-AC-A23H-01 17 37761926 37761926 G C NEUROD2 Missense_Mutation p.F309L 0.06 tolerated(0.06) benign(0.054) TCGA-AC-A23H-01 17 37790138 37790138 G A PPP1R1B Missense_Mutation p.V82M 0.06 tolerated(0.07) possibly_damaging(0.454) TCGA-AC-A23H-01 17 37790150 37790150 G A PPP1R1B Missense_Mutation p.A86T 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-AC-A23H-01 17 38027827 38027827 G C ZPBP2 Missense_Mutation p.E119Q 0.06 tolerated(0.14) possibly_damaging(0.458) TCGA-AC-A23H-01 17 38028531 38028531 G A ZPBP2 Missense_Mutation p.E139K 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 38062145 38062145 C G GSDMB Missense_Mutation p.E328Q 0.06 tolerated(0.13) benign(0.049) TCGA-AC-A23H-01 17 38078804 38078804 C T ORMDL3 Silent p.%3D 0.05 TCGA-AC-A23H-01 17 38290647 38290647 C T MSL1 3'UTR 0.40 TCGA-AC-A23H-01 17 38320318 38320318 C T CASC3 Missense_Mutation p.S457F 0.20 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-AC-A23H-01 17 38926132 38926132 C G KRT26 Splice_Site p.X282_splice 0.23 TCGA-AC-A23H-01 17 39086224 39086224 C G KRT23 Missense_Mutation p.E202Q 0.32 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 17 39086344 39086344 C T KRT23 Missense_Mutation p.E162K 0.38 deleterious(0) possibly_damaging(0.661) TCGA-AC-A23H-01 17 39262177 39262177 C T KRTAP4-9 Silent p.V179V 0.24 TCGA-AC-A23H-01 17 3954097 3954097 C G ZZEF1 Silent p.L1947L 0.20 TCGA-AC-A23H-01 17 39642531 39642531 C A KRT36 3'UTR 0.30 TCGA-AC-A23H-01 17 39659616 39659616 G A KRT13 Silent p.L220L 0.40 TCGA-AC-A23H-01 17 39680135 39680135 C T KRT19 Missense_Mutation p.D355N 0.39 deleterious(0) probably_damaging(0.981) TCGA-AC-A23H-01 17 39724873 39724873 C T KRT9 Missense_Mutation p.E353K 0.65 deleterious(0.03) probably_damaging(0.93) TCGA-AC-A23H-01 17 39766108 39766108 G A KRT16 3'UTR 0.24 TCGA-AC-A23H-01 17 39887781 39887781 C A HAP1 Nonsense_Mutation p.E345* 0.31 TCGA-AC-A23H-01 17 39973388 39973388 C T FKBP10 Silent p.G108G 0.35 TCGA-AC-A23H-01 17 40129410 40129410 G A CNP 3'UTR 0.41 TCGA-AC-A23H-01 17 40133873 40133873 C T DNAJC7 Missense_Mutation p.D462N 0.43 tolerated(0.09) benign(0.014) TCGA-AC-A23H-01 17 4017735 4017735 C G ZZEF1 Missense_Mutation p.E242Q 0.23 tolerated(0.12) probably_damaging(0.982) TCGA-AC-A23H-01 17 40936072 40936072 C T WNK4 Silent p.L303L 0.34 TCGA-AC-A23H-01 17 41570317 41570317 C G DHX8 Missense_Mutation p.P258A 0.25 tolerated(0.54) benign(0.01) TCGA-AC-A23H-01 17 41585183 41585183 C T DHX8 Nonsense_Mutation p.Q706* 0.35 TCGA-AC-A23H-01 17 42285229 42285229 C A UBTF Intron 0.23 TCGA-AC-A23H-01 17 42288479 42288479 C G UBTF Missense_Mutation p.E377D 0.29 tolerated(0.24) benign(0.028) TCGA-AC-A23H-01 17 42751493 42751493 G C C17orf104 Missense_Mutation p.E930Q 0.43 tolerated_low_confidence(0.12) possibly_damaging(0.479) TCGA-AC-A23H-01 17 42932315 42932315 C G EFTUD2 Missense_Mutation p.E701D 0.37 tolerated(0.07) probably_damaging(0.999) TCGA-AC-A23H-01 17 42985465 42985465 G A GFAP 3'Flank 0.38 TCGA-AC-A23H-01 17 4356369 4356369 G A SPNS3 Missense_Mutation p.E328K 0.55 tolerated(0.15) benign(0.1) TCGA-AC-A23H-01 17 44248961 44248961 G A KANSL1 Silent p.L183L 0.06 TCGA-AC-A23H-01 17 4448189 4448189 C T MYBBP1A Missense_Mutation p.E780K 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-AC-A23H-01 17 4451590 4451590 G A MYBBP1A Silent p.L524L 0.32 TCGA-AC-A23H-01 17 44627783 44627783 C T LRRC37A2 Silent p.L1569L 0.18 TCGA-AC-A23H-01 17 44630793 44630793 G C LRRC37A2 Missense_Mutation p.E1613Q 0.04 deleterious(0.02) probably_damaging(0.916) TCGA-AC-A23H-01 17 44832679 44832679 G C NSF Splice_Site p.X720_splice 0.14 TCGA-AC-A23H-01 17 45234711 45234711 G C CDC27 Missense_Mutation p.S172C 0.10 deleterious(0.01) possibly_damaging(0.849) TCGA-AC-A23H-01 17 45421527 45421527 G C EFCAB13 Splice_Site p.X102_splice 0.13 TCGA-AC-A23H-01 17 45438865 45438865 G A EFCAB13 Silent p.V261V 0.13 TCGA-AC-A23H-01 17 45507260 45507260 G C EFCAB13 Missense_Mutation p.L857F 0.12 tolerated(0.05) possibly_damaging(0.683) TCGA-AC-A23H-01 17 45623286 45623286 G C NPEPPS Silent p.A89A 0.06 TCGA-AC-A23H-01 17 45689949 45689949 C T NPEPPS Missense_Mutation p.S740F 0.09 deleterious(0) possibly_damaging(0.637) TCGA-AC-A23H-01 17 45811243 45811243 C T TBX21 Silent p.L141L 0.19 TCGA-AC-A23H-01 17 45822179 45822179 G A TBX21 Missense_Mutation p.G352E 0.08 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 17 45822336 45822336 G A TBX21 Missense_Mutation p.M404I 0.10 tolerated(0.08) benign(0.009) TCGA-AC-A23H-01 17 45885729 45885729 C T OSBPL7 Silent p.V819V 0.11 TCGA-AC-A23H-01 17 45897424 45897424 G C OSBPL7 Silent p.V38V 0.08 TCGA-AC-A23H-01 17 45909159 45909159 G C LRRC46 5'UTR 0.08 TCGA-AC-A23H-01 17 45916007 45916007 G C SCRN2 Missense_Mutation p.I276M 0.08 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 17 46020735 46020735 G A PNPO Missense_Mutation p.E68K 0.08 tolerated(0.09) possibly_damaging(0.758) TCGA-AC-A23H-01 17 46128437 46128442 AGATTT - NFE2L1 5'UTR 0.08 TCGA-AC-A23H-01 17 46262087 46262087 C T SKAP1 Missense_Mutation p.E189K 0.09 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 17 46262184 46262184 G C SKAP1 Silent p.L156L 0.06 TCGA-AC-A23H-01 17 4636512 4636512 G A MED11 3'UTR 0.23 TCGA-AC-A23H-01 17 4644970 4644970 G A ZMYND15 Missense_Mutation p.G229E 0.49 tolerated_low_confidence(0.15) benign(0.073) TCGA-AC-A23H-01 17 4647380 4647380 C T ZMYND15 Silent p.I491I 0.26 TCGA-AC-A23H-01 17 46621934 46621934 G A HOXB2 Missense_Mutation p.P114S 0.11 tolerated(0.51) benign(0.017) TCGA-AC-A23H-01 17 46627653 46627653 C T HOXB3 3'UTR 0.11 TCGA-AC-A23H-01 17 46654279 46654279 C G HOXB4 Silent p.L187L 0.05 TCGA-AC-A23H-01 17 46669667 46669667 G C HOXB5 Missense_Mutation p.I238M 0.05 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 17 46674007 46674007 C T HOXB6 Missense_Mutation p.R148Q 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 46685239 46685239 C G HOXB7 Missense_Mutation p.D207H 0.06 deleterious(0) possibly_damaging(0.717) TCGA-AC-A23H-01 17 46863684 46863684 C G TTLL6 Missense_Mutation p.E535Q 0.07 deleterious(0.05) probably_damaging(0.949) TCGA-AC-A23H-01 17 46865235 46865235 G C TTLL6 Missense_Mutation p.F509L 0.15 tolerated(0.05) possibly_damaging(0.801) TCGA-AC-A23H-01 17 4689248 4689248 C G VMO1 Missense_Mutation p.E99Q 0.29 tolerated(0.1) benign(0.047) TCGA-AC-A23H-01 17 47018359 47018359 C G SNF8 Missense_Mutation p.E57D 0.13 tolerated(0.87) benign(0.005) TCGA-AC-A23H-01 17 47036038 47036038 G C GIP 3'UTR 0.11 TCGA-AC-A23H-01 17 47041793 47041793 G C GIP Missense_Mutation p.Q46E 0.16 deleterious(0.03) benign(0.052) TCGA-AC-A23H-01 17 4711584 4711584 C T PLD2 Silent p.L86L 0.19 TCGA-AC-A23H-01 17 47210342 47210342 G C B4GALNT2 5'UTR 0.30 TCGA-AC-A23H-01 17 47236469 47236469 G A B4GALNT2 Missense_Mutation p.R250K 0.17 tolerated(0.08) benign(0.047) TCGA-AC-A23H-01 17 47236528 47236528 C T B4GALNT2 Nonsense_Mutation p.Q270* 0.19 TCGA-AC-A23H-01 17 47246924 47246924 C G B4GALNT2 Nonsense_Mutation p.S512* 0.17 TCGA-AC-A23H-01 17 47394868 47394868 C T ZNF652 Missense_Mutation p.E74K 0.20 tolerated(0.62) benign(0.156) TCGA-AC-A23H-01 17 4784433 4784433 G A MINK1 Missense_Mutation p.E63K 0.22 deleterious(0) benign(0.443) TCGA-AC-A23H-01 17 47869366 47869366 C T KAT7 Missense_Mutation p.S45F 0.17 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-AC-A23H-01 17 47904059 47904059 C G KAT7 Missense_Mutation p.I544M 0.20 tolerated(0.07) probably_damaging(0.984) TCGA-AC-A23H-01 17 4805749 4805749 C T CHRNE Missense_Mutation p.G77E 0.26 tolerated(1) possibly_damaging(0.886) TCGA-AC-A23H-01 17 48148880 48148880 T C ITGA3 Silent p.D319D 0.21 TCGA-AC-A23H-01 17 48156613 48156613 C G ITGA3 Silent p.L858L 0.16 TCGA-AC-A23H-01 17 48266749 48266749 C T COL1A1 Missense_Mutation p.D940N 0.23 unknown(0) TCGA-AC-A23H-01 17 48434547 48434547 G T XYLT2 Silent p.L625L 0.41 TCGA-AC-A23H-01 17 48456915 48456915 G A EME1 Missense_Mutation p.E458K 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 17 48469786 48469786 C G LRRC59 Missense_Mutation p.E134D 0.08 tolerated(0.16) benign(0.106) TCGA-AC-A23H-01 17 48472289 48472289 C G LRRC59 Splice_Site p.X55_splice 0.07 TCGA-AC-A23H-01 17 48541625 48541625 C T ACSF2 Silent p.I395I 0.07 TCGA-AC-A23H-01 17 48559524 48559524 G A RSAD1 Missense_Mutation p.E183K 0.11 tolerated(0.63) benign(0.026) TCGA-AC-A23H-01 17 48596409 48596409 G A MYCBPAP Missense_Mutation p.E286K 0.10 deleterious(0.02) possibly_damaging(0.713) TCGA-AC-A23H-01 17 48598577 48598577 C T MYCBPAP Silent p.F384F 0.09 TCGA-AC-A23H-01 17 48603379 48603379 G A MYCBPAP Silent p.V683V 0.16 TCGA-AC-A23H-01 17 48604669 48604669 G A MYCBPAP Missense_Mutation p.E774K 0.08 deleterious(0.02) probably_damaging(0.928) TCGA-AC-A23H-01 17 4862849 4862849 C T SPAG7 Missense_Mutation p.E222K 0.31 tolerated(0.33) benign(0.017) TCGA-AC-A23H-01 17 48683417 48683417 G A CACNA1G Intron 0.09 TCGA-AC-A23H-01 17 48692755 48692755 C T CACNA1G Missense_Mutation p.S1598F 0.09 deleterious(0) probably_damaging(0.947) TCGA-AC-A23H-01 17 48701738 48701738 C T CACNA1G Missense_Mutation p.H2083Y 0.10 tolerated(0.07) possibly_damaging(0.507) TCGA-AC-A23H-01 17 48703424 48703424 G A CACNA1G Missense_Mutation p.R2149Q 0.08 tolerated(0.36) benign(0.002) TCGA-AC-A23H-01 17 48704005 48704005 C T CACNA1G Missense_Mutation p.P2343S 0.12 tolerated_low_confidence(0.9) benign(0.001) TCGA-AC-A23H-01 17 48773396 48773396 G A ANKRD40 Missense_Mutation p.P357S 0.05 tolerated(0.36) benign(0.178) TCGA-AC-A23H-01 17 48785013 48785013 C T ANKRD40 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) benign(0.035) TCGA-AC-A23H-01 17 4881837 4881837 G A CAMTA2 Missense_Mutation p.S599L 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-AC-A23H-01 17 48822166 48822166 G C LUC7L3 Missense_Mutation p.E229Q 0.05 deleterious(0.03) unknown(0) TCGA-AC-A23H-01 17 48827901 48827901 C T LUC7L3 Missense_Mutation p.S393F 0.06 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-AC-A23H-01 17 48941132 48941132 G A TOB1 Missense_Mutation p.R83C 0.05 deleterious(0) benign(0.013) TCGA-AC-A23H-01 17 4903598 4903598 G A KIF1C Silent p.E19E 0.21 TCGA-AC-A23H-01 17 4905812 4905812 G C KIF1C Missense_Mutation p.K161N 0.41 deleterious(0.04) benign(0.068) TCGA-AC-A23H-01 17 49072808 49072808 C T SPAG9 Missense_Mutation p.M685I 0.07 deleterious(0) possibly_damaging(0.778) TCGA-AC-A23H-01 17 49075948 49075948 G C SPAG9 Missense_Mutation p.N565K 0.06 tolerated(0.26) benign(0.002) TCGA-AC-A23H-01 17 49247359 49247359 C T NME1-NME2 Missense_Mutation p.A212V 0.04 tolerated(0.14) benign(0.061) TCGA-AC-A23H-01 17 49248992 49248992 C T NME1-NME2 3'UTR 0.10 TCGA-AC-A23H-01 17 49257938 49257938 C T MBTD1 Silent p.%3D 0.07 TCGA-AC-A23H-01 17 49272650 49272650 A C MBTD1 Missense_Mutation p.Y433D 0.07 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 17 49357395 49357395 G A UTP18 Missense_Mutation p.E348K 0.05 tolerated(0.13) benign(0.038) TCGA-AC-A23H-01 17 4994827 4994827 C T ZFP3 Missense_Mutation p.P10S 0.32 tolerated(0.29) benign(0.013) TCGA-AC-A23H-01 17 4995790 4995790 C T ZFP3 Missense_Mutation p.H331Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 17 51901855 51901855 G C KIF2B Missense_Mutation p.Q487H 0.23 tolerated(0.16) benign(0.109) TCGA-AC-A23H-01 17 53038700 53038700 C G COX11 3'UTR 0.08 TCGA-AC-A23H-01 17 53040623 53040623 C G COX11 Intron 0.08 TCGA-AC-A23H-01 17 53851180 53851180 G C PCTP Missense_Mutation p.E145D 0.12 deleterious(0.01) possibly_damaging(0.698) TCGA-AC-A23H-01 17 5392473 5392473 C G MIS12 Missense_Mutation p.I97M 0.22 deleterious(0) possibly_damaging(0.558) TCGA-AC-A23H-01 17 5404994 5404994 G A NLRP1 3'UTR 0.16 TCGA-AC-A23H-01 17 54428145 54428145 G A ANKFN1 Missense_Mutation p.M72I 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-AC-A23H-01 17 54520242 54520242 G A ANKFN1 Missense_Mutation p.M352I 0.12 deleterious(0.05) benign(0.022) TCGA-AC-A23H-01 17 54872451 54872451 C G C17orf67 Missense_Mutation p.D83H 0.08 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-AC-A23H-01 17 54892310 54892310 C T C17orf67 Missense_Mutation p.E26K 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-AC-A23H-01 17 54912214 54912214 G T DGKE Missense_Mutation p.G20W 0.08 tolerated_low_confidence(0.07) benign(0.001) TCGA-AC-A23H-01 17 54923124 54923124 G C DGKE Missense_Mutation p.G233A 0.05 deleterious(0.05) probably_damaging(1) TCGA-AC-A23H-01 17 54933939 54933939 C G DGKE Missense_Mutation p.H389D 0.06 tolerated(0.09) probably_damaging(0.999) TCGA-AC-A23H-01 17 54978940 54978940 C G TRIM25 Splice_Site p.X310_splice 0.08 TCGA-AC-A23H-01 17 54981747 54981747 C G TRIM25 Missense_Mutation p.E266Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 17 55027828 55027828 C T COIL Missense_Mutation p.D259N 0.07 deleterious(0.05) probably_damaging(0.946) TCGA-AC-A23H-01 17 55038347 55038347 G A COIL Nonsense_Mutation p.Q12* 0.08 TCGA-AC-A23H-01 17 55193535 55193535 C A AKAP1 Missense_Mutation p.S782Y 0.09 tolerated(0.71) benign(0.021) TCGA-AC-A23H-01 17 55194264 55194264 C G AKAP1 Missense_Mutation p.L826V 0.06 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 17 55674249 55674249 G A MSI2 Missense_Mutation p.E159K 0.05 deleterious(0.04) benign(0.229) TCGA-AC-A23H-01 17 56082743 56082743 C G SRSF1 3'UTR 0.08 TCGA-AC-A23H-01 17 56247053 56247053 G A OR4D2 Missense_Mutation p.V13I 0.07 tolerated(0.63) benign(0.02) TCGA-AC-A23H-01 17 56272396 56272396 C G EPX Silent p.L222L 0.10 TCGA-AC-A23H-01 17 56274475 56274475 G A EPX Missense_Mutation p.R326H 0.14 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 17 56289771 56289771 G A MKS1 Missense_Mutation p.L295F 0.18 deleterious(0.05) possibly_damaging(0.77) TCGA-AC-A23H-01 17 56291688 56291688 C G MKS1 Missense_Mutation p.R192S 0.14 deleterious(0.01) benign(0.06) TCGA-AC-A23H-01 17 56295993 56295993 G A MKS1 Nonsense_Mutation p.Q60* 0.07 TCGA-AC-A23H-01 17 56332174 56332174 G C LPO Missense_Mutation p.D370H 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 56342251 56342251 G T LPO Missense_Mutation p.D479Y 0.07 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 56342281 56342281 C A LPO Missense_Mutation p.P489T 0.07 deleterious(0) possibly_damaging(0.595) TCGA-AC-A23H-01 17 56342284 56342284 G A LPO Missense_Mutation p.E490K 0.07 tolerated(0.6) benign(0.034) TCGA-AC-A23H-01 17 56355420 56355420 G T MPO Silent p.I324I 0.08 TCGA-AC-A23H-01 17 56388434 56388434 G C BZRAP1 Missense_Mutation p.I1074M 0.09 deleterious(0) benign(0.418) TCGA-AC-A23H-01 17 56435255 56435255 C T RNF43 Missense_Mutation p.D628N 0.08 tolerated_low_confidence(0.08) benign(0.046) TCGA-AC-A23H-01 17 56606484 56606484 C T SEPT4 Intron 0.06 TCGA-AC-A23H-01 17 56619137 56619137 G C C17orf47 3'UTR 0.10 TCGA-AC-A23H-01 17 56621220 56621220 G A C17orf47 Nonsense_Mutation p.Q110* 0.09 TCGA-AC-A23H-01 17 56676420 56676420 C T TEX14 Silent p.Q768Q 0.07 TCGA-AC-A23H-01 17 56676567 56676567 C G TEX14 Missense_Mutation p.K719N 0.09 tolerated(0.13) benign(0.174) TCGA-AC-A23H-01 17 56774070 56774070 G C RAD51C Missense_Mutation p.D141H 0.07 deleterious(0) probably_damaging(0.928) TCGA-AC-A23H-01 17 56833543 56833543 C T PPM1E Missense_Mutation p.S62L 0.17 tolerated_low_confidence(0.4) unknown(0) TCGA-AC-A23H-01 17 57057971 57057971 C G PPM1E Nonsense_Mutation p.S616* 0.12 TCGA-AC-A23H-01 17 57076664 57076664 G A TRIM37 3'UTR 0.10 TCGA-AC-A23H-01 17 57287592 57287592 G T SMG8 Silent p.L60L 0.08 TCGA-AC-A23H-01 17 57288711 57288711 G A SMG8 Silent p.R433R 0.11 TCGA-AC-A23H-01 17 57289815 57289815 G C SMG8 Missense_Mutation p.D625H 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-AC-A23H-01 17 57290368 57290368 G T SMG8 Silent p.V728V 0.09 TCGA-AC-A23H-01 17 57326144 57326144 G C GDPD1 Missense_Mutation p.R122T 0.07 tolerated(0.53) benign(0.026) TCGA-AC-A23H-01 17 57656910 57656910 C T DHX40 Missense_Mutation p.P384L 0.08 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 17 57682831 57682831 G C DHX40 Missense_Mutation p.E666Q 0.07 deleterious(0.04) possibly_damaging(0.702) TCGA-AC-A23H-01 17 57725688 57725688 C T CLTC Nonsense_Mutation p.Q203* 0.05 TCGA-AC-A23H-01 17 57744325 57744325 C G CLTC Missense_Mutation p.F705L 0.06 deleterious(0.01) possibly_damaging(0.702) TCGA-AC-A23H-01 17 57759121 57759121 G A CLTC Silent p.V1121V 0.08 TCGA-AC-A23H-01 17 57760055 57760055 C T CLTC Silent p.S1222S 0.04 TCGA-AC-A23H-01 17 57760820 57760820 G C CLTC Missense_Mutation p.D1372H 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 57763030 57763030 G C CLTC Missense_Mutation p.R1563T 0.07 deleterious(0.03) benign(0.253) TCGA-AC-A23H-01 17 57763127 57763127 C G CLTC Silent p.A1595A 0.08 TCGA-AC-A23H-01 17 57768009 57768009 G C CLTC Missense_Mutation p.D1614H 0.05 deleterious(0.01) benign(0.007) TCGA-AC-A23H-01 17 57768026 57768026 G A CLTC Silent p.L1619L 0.06 TCGA-AC-A23H-01 17 57918654 57918654 G T VMP1 3'Flank 0.07 TCGA-AC-A23H-01 17 57937769 57937769 A T TUBD1 Missense_Mutation p.Y426N 0.04 deleterious(0) probably_damaging(0.977) TCGA-AC-A23H-01 17 58009067 58009067 C A RPS6KB1 Silent p.I224I 0.06 TCGA-AC-A23H-01 17 58024257 58024257 C A RPS6KB1 3'UTR 0.15 TCGA-AC-A23H-01 17 58120840 58120840 C G HEATR6 3'UTR 0.08 TCGA-AC-A23H-01 17 58120869 58120869 C G HEATR6 3'UTR 0.07 TCGA-AC-A23H-01 17 58120922 58120922 C G HEATR6 3'UTR 0.05 TCGA-AC-A23H-01 17 58120990 58120990 C T HEATR6 Silent p.E1160E 0.04 TCGA-AC-A23H-01 17 58120992 58120992 C T HEATR6 Missense_Mutation p.E1160K 0.04 deleterious_low_confidence(0.02) benign(0.05) TCGA-AC-A23H-01 17 58121421 58121421 G A HEATR6 Missense_Mutation p.R1017C 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 58342794 58342794 C T USP32 Silent p.L323L 0.05 TCGA-AC-A23H-01 17 58469261 58469261 C T USP32 Missense_Mutation p.E14K 0.10 deleterious(0.01) benign(0.004) TCGA-AC-A23H-01 17 58506783 58506783 C G C17orf64 Missense_Mutation p.L164V 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A23H-01 17 58511340 58511340 G A C17orf64 3'Flank 0.11 TCGA-AC-A23H-01 17 58541445 58541445 C T APPBP2 Missense_Mutation p.M233I 0.04 tolerated(0.27) benign(0.001) TCGA-AC-A23H-01 17 59668454 59668454 C T NACA2 Missense_Mutation p.D30N 0.12 tolerated(0.07) possibly_damaging(0.624) TCGA-AC-A23H-01 17 60023861 60023861 G A MED13 Nonsense_Mutation p.Q2165* 0.17 TCGA-AC-A23H-01 17 60028299 60028299 G A MED13 Nonsense_Mutation p.Q2060* 0.13 TCGA-AC-A23H-01 17 60059607 60059607 C T MED13 Missense_Mutation p.E1253K 0.14 deleterious(0.01) probably_damaging(0.96) TCGA-AC-A23H-01 17 60062082 60062082 G C MED13 Missense_Mutation p.S874C 0.10 tolerated(0.07) benign(0.002) TCGA-AC-A23H-01 17 60072533 60072533 C G MED13 Missense_Mutation p.E721Q 0.13 deleterious(0.01) probably_damaging(0.94) TCGA-AC-A23H-01 17 60088352 60088352 G A MED13 Missense_Mutation p.S509L 0.08 tolerated(0.14) benign(0.05) TCGA-AC-A23H-01 17 60451218 60451218 G A EFCAB3 Silent p.K26K 0.17 TCGA-AC-A23H-01 17 60769807 60769807 G C MRC2 Missense_Mutation p.E1479Q 0.21 deleterious(0.02) possibly_damaging(0.529) TCGA-AC-A23H-01 17 61557151 61557151 C G ACE Missense_Mutation p.S178C 0.16 deleterious(0) possibly_damaging(0.868) TCGA-AC-A23H-01 17 61611486 61611486 C T KCNH6 Silent p.L305L 0.12 TCGA-AC-A23H-01 17 61623063 61623063 C G KCNH6 Missense_Mutation p.L929V 0.10 tolerated_low_confidence(0.12) benign(0.01) TCGA-AC-A23H-01 17 61623093 61623093 G C KCNH6 Missense_Mutation p.E939Q 0.14 tolerated_low_confidence(0.47) benign(0.006) TCGA-AC-A23H-01 17 61623110 61623110 C G KCNH6 Silent p.P944P 0.08 TCGA-AC-A23H-01 17 61824068 61824068 C G CCDC47 3'UTR 0.11 TCGA-AC-A23H-01 17 61897486 61897486 C T FTSJ3 Silent p.V768V 0.11 TCGA-AC-A23H-01 17 61901720 61901720 C G FTSJ3 Silent p.L323L 0.14 TCGA-AC-A23H-01 17 62137926 62137926 G A ERN1 Missense_Mutation p.S370F 0.20 tolerated(0.14) possibly_damaging(0.569) TCGA-AC-A23H-01 17 62289937 62289937 C T TEX2 Silent p.L547L 0.15 TCGA-AC-A23H-01 17 62291115 62291115 C T TEX2 Missense_Mutation p.E155K 0.18 tolerated(0.12) possibly_damaging(0.816) TCGA-AC-A23H-01 17 62488822 62488822 C T POLG2 Missense_Mutation p.D253N 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-AC-A23H-01 17 62498636 62498636 C A DDX5 Nonsense_Mutation p.E339* 0.16 TCGA-AC-A23H-01 17 62502320 62502320 G A DDX5 5'UTR 0.39 TCGA-AC-A23H-01 17 62512925 62512925 G T CEP95 Missense_Mutation p.W151L 0.10 tolerated(0.94) benign(0.302) TCGA-AC-A23H-01 17 62964378 62964378 C G AMZ2P1 RNA 0.23 TCGA-AC-A23H-01 17 63533054 63533054 C G AXIN2 Missense_Mutation p.D614H 0.11 deleterious(0) probably_damaging(0.961) TCGA-AC-A23H-01 17 63533676 63533676 G A AXIN2 Missense_Mutation p.S493L 0.22 tolerated(0.7) benign(0.002) TCGA-AC-A23H-01 17 63533813 63533813 G C AXIN2 Silent p.L447L 0.21 TCGA-AC-A23H-01 17 64216681 64216681 C G APOH Missense_Mutation p.E199Q 0.19 deleterious(0.02) possibly_damaging(0.665) TCGA-AC-A23H-01 17 644582 644582 C G FAM57A Missense_Mutation p.I182M 0.21 deleterious(0.04) possibly_damaging(0.682) TCGA-AC-A23H-01 17 649202 649202 G A GEMIN4 Missense_Mutation p.P694L 0.29 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 65052163 65052163 C T CACNG1 Missense_Mutation p.L149F 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 17 65147275 65147275 G C HELZ Nonsense_Mutation p.S748* 0.10 TCGA-AC-A23H-01 17 65688999 65688999 G C PITPNC1 Missense_Mutation p.E332Q 0.18 deleterious_low_confidence(0) benign(0.03) TCGA-AC-A23H-01 17 65714082 65714082 G C NOL11 Missense_Mutation p.E7Q 0.23 tolerated(0.25) possibly_damaging(0.569) TCGA-AC-A23H-01 17 65928070 65928070 G C BPTF Missense_Mutation p.R2065T 0.12 probably_damaging(0.918) TCGA-AC-A23H-01 17 66247258 66247258 G A AMZ2 Missense_Mutation p.M175I 0.15 deleterious(0.01) possibly_damaging(0.589) TCGA-AC-A23H-01 17 66416409 66416409 T C ARSG Silent p.D461D 0.12 TCGA-AC-A23H-01 17 66446899 66446899 G A WIPI1 Silent p.S101S 0.12 TCGA-AC-A23H-01 17 66518949 66518949 C T PRKAR1A Missense_Mutation p.S77L 0.19 tolerated(0.13) benign(0.001) TCGA-AC-A23H-01 17 66864282 66864282 C G ABCA8 Missense_Mutation p.E1564Q 0.09 deleterious(0.02) benign(0.288) TCGA-AC-A23H-01 17 66913593 66913593 C T ABCA8 Splice_Site p.X643_splice 0.14 TCGA-AC-A23H-01 17 66920856 66920856 C T ABCA8 Silent p.G476G 0.20 TCGA-AC-A23H-01 17 66928639 66928639 G A ABCA8 Missense_Mutation p.S196L 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 66928643 66928643 G A ABCA8 Missense_Mutation p.H195Y 0.12 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 17 67129840 67129840 C G ABCA6 Missense_Mutation p.E245Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 17 67186601 67186601 C A ABCA10 Missense_Mutation p.D677Y 0.16 deleterious(0) probably_damaging(0.937) TCGA-AC-A23H-01 17 67310505 67310505 G A ABCA5 Silent p.L18L 0.13 TCGA-AC-A23H-01 17 685409 685409 C T GLOD4 Missense_Mutation p.M29I 0.83 deleterious(0) possibly_damaging(0.844) TCGA-AC-A23H-01 17 685696 685696 G C RNMTL1 Silent p.A26A 0.17 TCGA-AC-A23H-01 17 6913149 6913149 G A ALOX12 Missense_Mutation p.A542T 0.26 deleterious(0.01) probably_damaging(0.909) TCGA-AC-A23H-01 17 6920285 6920285 G C C17orf49 Missense_Mutation p.E156Q 0.11 deleterious(0.03) probably_damaging(0.983) TCGA-AC-A23H-01 17 70117755 70117755 G A SOX9 Missense_Mutation p.E75K 0.25 deleterious(0) possibly_damaging(0.683) TCGA-AC-A23H-01 17 7096884 7096884 G A DLG4 Silent p.I580I 0.19 TCGA-AC-A23H-01 17 71202305 71202305 G C COG1 Silent p.V841V 0.21 TCGA-AC-A23H-01 17 71204437 71204437 C G FAM104A 3'UTR 0.11 TCGA-AC-A23H-01 17 71231832 71231832 G C C17orf80 Missense_Mutation p.E71Q 0.14 tolerated(0.19) probably_damaging(0.979) TCGA-AC-A23H-01 17 7124101 7124101 G C ACADVL Missense_Mutation p.Q121H 0.25 deleterious(0.02) probably_damaging(0.98) TCGA-AC-A23H-01 17 7124146 7124146 C T ACADVL Silent p.F136F 0.23 TCGA-AC-A23H-01 17 71390362 71390362 C T SDK2 Missense_Mutation p.V1232M 0.15 deleterious(0) possibly_damaging(0.885) TCGA-AC-A23H-01 17 71391372 71391372 G A SDK2 Missense_Mutation p.R1172C 0.16 deleterious(0) possibly_damaging(0.903) TCGA-AC-A23H-01 17 71415322 71415322 G C SDK2 Silent p.L723L 0.12 TCGA-AC-A23H-01 17 71415334 71415334 C G SDK2 Missense_Mutation p.Q719H 0.15 tolerated(0.77) probably_damaging(0.996) TCGA-AC-A23H-01 17 71429906 71429906 G A SDK2 Missense_Mutation p.S426L 0.37 deleterious(0.04) benign(0.393) TCGA-AC-A23H-01 17 72218677 72218677 C G TTYH2 Missense_Mutation p.I61M 0.27 deleterious(0) possibly_damaging(0.595) TCGA-AC-A23H-01 17 72248379 72248379 C T TTYH2 Silent p.L375L 0.17 TCGA-AC-A23H-01 17 72443133 72443133 C G GPRC5C Missense_Mutation p.S476C 0.14 tolerated_low_confidence(0.19) benign(0.032) TCGA-AC-A23H-01 17 72470749 72470749 C A CD300A Missense_Mutation p.S153Y 0.14 tolerated(1) benign(0.199) TCGA-AC-A23H-01 17 72584893 72584893 C G CD300LD Missense_Mutation p.E46Q 0.15 tolerated(0.05) possibly_damaging(0.871) TCGA-AC-A23H-01 17 72619723 72619723 G A CD300E Missense_Mutation p.S13L 0.10 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 17 72771829 72771829 C G NAT9 Missense_Mutation p.L3F 0.15 deleterious(0.01) benign(0.275) TCGA-AC-A23H-01 17 72916710 72916710 G A USH1G Missense_Mutation p.S74F 0.08 deleterious(0) possibly_damaging(0.837) TCGA-AC-A23H-01 17 729215 729215 C T NXN Missense_Mutation p.R155Q 0.18 tolerated(0.21) benign(0.121) TCGA-AC-A23H-01 17 73100120 73100120 C G SLC16A5 Missense_Mutation p.F403L 0.08 tolerated(0.3) possibly_damaging(0.643) TCGA-AC-A23H-01 17 73236163 73236163 G T GGA3 Missense_Mutation p.F430L 0.12 tolerated(0.21) benign(0.019) TCGA-AC-A23H-01 17 73265503 73265503 C T MIF4GD Missense_Mutation p.E44K 0.12 tolerated_low_confidence(0.4) benign(0.002) TCGA-AC-A23H-01 17 7344851 7344851 G A FGF11 Silent p.A85A 0.25 TCGA-AC-A23H-01 17 73467979 73467979 C T KIAA0195 5'UTR 0.19 TCGA-AC-A23H-01 17 73497125 73497125 G A CASKIN2 3'UTR 0.16 TCGA-AC-A23H-01 17 73515093 73515093 G A TSEN54 Silent p.K162K 0.10 TCGA-AC-A23H-01 17 73566277 73566277 C T LLGL2 Silent p.F605F 0.23 TCGA-AC-A23H-01 17 73623727 73623727 G C RECQL5 Missense_Mutation p.Q951E 0.15 tolerated(1) benign(0.009) TCGA-AC-A23H-01 17 73624334 73624334 G A RECQL5 Silent p.L923L 0.15 TCGA-AC-A23H-01 17 73646647 73646647 G C RECQL5 Intron 0.32 TCGA-AC-A23H-01 17 73844682 73844682 G A WBP2 Silent p.F122F 0.18 TCGA-AC-A23H-01 17 73919394 73919394 C T FBF1 Missense_Mutation p.E418K 0.18 tolerated(0.19) benign(0.002) TCGA-AC-A23H-01 17 73929158 73929158 C G FBF1 Missense_Mutation p.E15Q 0.21 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 17 73945642 73945642 C T ACOX1 Silent p.V506V 0.13 TCGA-AC-A23H-01 17 73998136 73998136 C G CDK3 Silent p.L76L 0.17 TCGA-AC-A23H-01 17 73998483 73998483 G A CDK3 Missense_Mutation p.R157H 0.14 deleterious(0.02) probably_damaging(0.981) TCGA-AC-A23H-01 17 74005361 74005361 C G EVPL Missense_Mutation p.E1309Q 0.14 deleterious(0.03) probably_damaging(0.949) TCGA-AC-A23H-01 17 74011098 74011098 C G EVPL Missense_Mutation p.Q707H 0.24 deleterious(0.02) benign(0.02) TCGA-AC-A23H-01 17 74011416 74011416 C T EVPL Silent p.Q640Q 0.30 TCGA-AC-A23H-01 17 74072729 74072729 C G GALR2 Missense_Mutation p.I127M 0.38 deleterious(0) probably_damaging(0.981) TCGA-AC-A23H-01 17 74080128 74080128 C G EXOC7 Missense_Mutation p.Q688H 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-AC-A23H-01 17 74081799 74081799 G T EXOC7 Missense_Mutation p.F576L 0.18 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 17 74274261 74274261 C T QRICH2 Silent p.L1476L 0.25 TCGA-AC-A23H-01 17 74287895 74287895 C G QRICH2 Missense_Mutation p.L805F 0.18 tolerated(0.07) benign(0.134) TCGA-AC-A23H-01 17 74290028 74290028 G A QRICH2 Silent p.S94S 0.21 TCGA-AC-A23H-01 17 74472980 74472980 C T RHBDF2 Silent p.L378L 0.30 TCGA-AC-A23H-01 17 7460135 7460135 C G TNFSF12 Missense_Mutation p.I138M 0.26 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AC-A23H-01 17 74729274 74729274 C G METTL23 Missense_Mutation p.S100C 0.25 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 17 74733078 74733078 G A SRSF2 Silent p.R55R 0.22 TCGA-AC-A23H-01 17 7483154 7483154 C T CD68 Missense_Mutation p.H26Y 0.43 deleterious(0) possibly_damaging(0.613) TCGA-AC-A23H-01 17 74900401 74900401 C G MGAT5B Missense_Mutation p.S207C 0.18 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 17 75212767 75212767 G C SEC14L1 3'UTR 0.29 TCGA-AC-A23H-01 17 7556729 7556729 C T ATP1B2 Silent p.F50F 0.24 TCGA-AC-A23H-01 17 75877885 75877885 G A FLJ45079 3'UTR 0.18 TCGA-AC-A23H-01 17 76122675 76122675 G A TMC6 Silent p.L37L 0.21 TCGA-AC-A23H-01 17 76166959 76166959 C G SYNGR2 Missense_Mutation p.S54C 0.23 deleterious(0) possibly_damaging(0.841) TCGA-AC-A23H-01 17 76210941 76210941 G C BIRC5 Intron 0.32 TCGA-AC-A23H-01 17 76235275 76235275 C T TMEM235 Missense_Mutation p.L194F 0.21 tolerated(0.09) probably_damaging(0.997) TCGA-AC-A23H-01 17 76422615 76422615 C A DNAH17 Missense_Mutation p.D4303Y 0.33 benign(0.402) TCGA-AC-A23H-01 17 76495140 76495140 C G DNAH17 Missense_Mutation p.D1885H 0.25 probably_damaging(0.999) TCGA-AC-A23H-01 17 76495264 76495264 C T DNAH17-AS1 5'UTR 0.23 TCGA-AC-A23H-01 17 76557921 76557921 C T DNAH17 Missense_Mutation p.E571K 0.31 benign(0.001) TCGA-AC-A23H-01 17 7696522 7696522 G A DNAH2 Missense_Mutation p.R2523Q 0.29 benign(0.006) TCGA-AC-A23H-01 17 7726791 7726791 C T DNAH2 Missense_Mutation p.P3725L 0.18 probably_damaging(0.998) TCGA-AC-A23H-01 17 7761371 7761371 G C CYB5D1 5'UTR 0.50 TCGA-AC-A23H-01 17 7761522 7761522 G A CYB5D1 Missense_Mutation p.E24K 0.16 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 17 77808489 77808489 C G CBX4 Missense_Mutation p.E318Q 0.30 tolerated(0.07) probably_damaging(0.954) TCGA-AC-A23H-01 17 77809493 77809493 C A CBX4 Silent p.L66L 0.24 TCGA-AC-A23H-01 17 78013794 78013794 G A CCDC40 Missense_Mutation p.E93K 0.31 tolerated_low_confidence(0.86) benign(0.074) TCGA-AC-A23H-01 17 7801884 7801884 G A CHD3 Missense_Mutation p.D767N 0.19 possibly_damaging(0.539) TCGA-AC-A23H-01 17 78195503 78195503 G A SLC26A11 Silent p.L48L 0.42 TCGA-AC-A23H-01 17 78317812 78317812 G A RNF213 Silent p.A2113A 0.27 TCGA-AC-A23H-01 17 78363039 78363039 G A RNF213 Missense_Mutation p.E5023K 0.30 benign(0.221) TCGA-AC-A23H-01 17 7851261 7851261 G A CNTROB Missense_Mutation p.E725K 0.17 tolerated_low_confidence(0.23) benign(0.392) TCGA-AC-A23H-01 17 78811744 78811744 G C RPTOR Missense_Mutation p.D387H 0.30 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 17 7916567 7916567 G A GUCY2D Missense_Mutation p.E754K 0.17 tolerated(0.19) benign(0.017) TCGA-AC-A23H-01 17 79660949 79660949 C T HGS Missense_Mutation p.S297L 0.39 tolerated(0.31) benign(0) TCGA-AC-A23H-01 17 79852414 79852414 G C ANAPC11 Missense_Mutation p.E21Q 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-AC-A23H-01 17 79890827 79890827 G C PYCR1 3'UTR 0.38 TCGA-AC-A23H-01 17 80039546 80039546 C T FASN Missense_Mutation p.E2113K 0.24 deleterious(0.02) benign(0.155) TCGA-AC-A23H-01 17 80040285 80040285 C G FASN Missense_Mutation p.L1975F 0.30 deleterious(0.03) probably_damaging(0.942) TCGA-AC-A23H-01 17 80041112 80041112 G T FASN Missense_Mutation p.A1844D 0.31 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 17 8018965 8018965 G A ALOXE3 Missense_Mutation p.H264Y 0.23 tolerated(0.06) benign(0.367) TCGA-AC-A23H-01 17 8046020 8046020 G C PER1 Missense_Mutation p.S1069C 0.23 tolerated(0.06) possibly_damaging(0.744) TCGA-AC-A23H-01 17 8051506 8051506 C G PER1 Missense_Mutation p.D374H 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 17 8092474 8092474 C T C17orf59 Missense_Mutation p.E329K 0.56 deleterious(0.02) probably_damaging(0.949) TCGA-AC-A23H-01 17 81042910 81042910 C G METRNL Silent p.L89L 0.17 TCGA-AC-A23H-01 17 8146451 8146451 C G CTC1 Missense_Mutation p.E17Q 0.43 tolerated(0.45) benign(0.221) TCGA-AC-A23H-01 17 8192698 8192698 C A RANGRF Missense_Mutation p.S106Y 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-AC-A23H-01 17 8216854 8216854 C G ARHGEF15 Missense_Mutation p.P324A 0.21 tolerated(0.06) benign(0.021) TCGA-AC-A23H-01 17 8222226 8222226 G C ARHGEF15 Missense_Mutation p.K677N 0.30 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 17 8222653 8222653 G C ARHGEF15 Missense_Mutation p.G737A 0.30 tolerated(0.37) benign(0.027) TCGA-AC-A23H-01 17 8395802 8395802 G C MYH10 Missense_Mutation p.S1495C 0.17 probably_damaging(0.999) TCGA-AC-A23H-01 17 8659711 8659711 C G SPDYE4 Silent p.L128L 0.14 TCGA-AC-A23H-01 17 8789614 8789614 G C PIK3R5 Missense_Mutation p.T687R 0.12 tolerated(1) benign(0.004) TCGA-AC-A23H-01 17 9487654 9487654 C T WDR16 Intron 0.16 TCGA-AC-A23H-01 17 959301 959301 G C ABR Missense_Mutation p.S512C 0.36 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 18 10794838 10794838 C G PIEZO2 Missense_Mutation p.E564Q 0.22 tolerated(0.19) benign(0.105) TCGA-AC-A23H-01 18 10803884 10803884 C T PIEZO2 Missense_Mutation p.D397N 0.34 deleterious(0.01) possibly_damaging(0.794) TCGA-AC-A23H-01 18 12971224 12971224 G C SEH1L Missense_Mutation p.Q198H 0.27 tolerated(0.55) benign(0.012) TCGA-AC-A23H-01 18 18981208 18981208 G C GREB1L Missense_Mutation p.K210N 0.27 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 18 19353670 19353670 G A MIB1 Missense_Mutation p.R206K 0.30 deleterious(0) possibly_damaging(0.906) TCGA-AC-A23H-01 18 19405701 19405701 G A MIB1 Intron 0.32 TCGA-AC-A23H-01 18 19424122 19424122 C G MIB1 Missense_Mutation p.L707V 0.33 deleterious(0.02) probably_damaging(0.956) TCGA-AC-A23H-01 18 20529580 20529580 G A RBBP8 Splice_Site p.X51_splice 0.28 TCGA-AC-A23H-01 18 21501525 21501525 G A LAMA3 Missense_Mutation p.G2718E 0.30 probably_damaging(1) TCGA-AC-A23H-01 18 216572 216572 G A THOC1 Missense_Mutation p.H506Y 0.33 deleterious(0) probably_damaging(0.98) TCGA-AC-A23H-01 18 22804334 22804334 C T ZNF521 Missense_Mutation p.R1183K 0.29 tolerated_low_confidence(0.53) benign(0) TCGA-AC-A23H-01 18 22805296 22805296 C T ZNF521 Silent p.L862L 0.28 TCGA-AC-A23H-01 18 23619393 23619393 G C SS18 Missense_Mutation p.S212C 0.30 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-AC-A23H-01 18 24081182 24081182 G A KCTD1 Silent p.I6I 0.34 TCGA-AC-A23H-01 18 24127738 24127738 C G KCTD1 Intron 0.30 TCGA-AC-A23H-01 18 25589823 25589823 C G CDH2 Missense_Mutation p.R187T 0.39 deleterious(0.01) possibly_damaging(0.873) TCGA-AC-A23H-01 18 29110947 29110947 C A DSG2 Intron 0.39 TCGA-AC-A23H-01 18 29450349 29450349 C T TRAPPC8 Missense_Mutation p.E792K 0.29 tolerated(0.42) benign(0.001) TCGA-AC-A23H-01 18 2960673 2960673 C A LPIN2 Nonsense_Mutation p.G56* 0.29 TCGA-AC-A23H-01 18 29704794 29704794 C G RNF138 Missense_Mutation p.Q183E 0.28 tolerated(0.33) benign(0.013) TCGA-AC-A23H-01 18 30873229 30873229 G A CCDC178 Missense_Mutation p.S357L 0.36 tolerated(0.17) benign(0.109) TCGA-AC-A23H-01 18 31523138 31523138 C T NOL4 Missense_Mutation p.R478Q 0.34 deleterious(0) probably_damaging(0.965) TCGA-AC-A23H-01 18 3188817 3188817 C G MYOM1 Missense_Mutation p.E234Q 0.35 tolerated(0.06) possibly_damaging(0.623) TCGA-AC-A23H-01 18 32345992 32345992 G C DTNA Missense_Mutation p.Q45H 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-AC-A23H-01 18 32825835 32825835 G C ZNF397 Missense_Mutation p.R389T 0.39 deleterious(0) probably_damaging(0.95) TCGA-AC-A23H-01 18 32886343 32886343 G C ZNF271 RNA 0.15 TCGA-AC-A23H-01 18 32954210 32954210 G A ZNF396 Missense_Mutation p.S16L 0.67 tolerated(0.51) benign(0.039) TCGA-AC-A23H-01 18 33558989 33558989 C G C18orf21 3'UTR 0.49 TCGA-AC-A23H-01 18 33689702 33689702 C T SLC39A6 Missense_Mutation p.E708K 0.31 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 18 33709951 33709951 C T ELP2 Missense_Mutation p.R19W 0.24 deleterious(0.02) possibly_damaging(0.677) TCGA-AC-A23H-01 18 3458000 3458000 G A TGIF1 3'UTR 0.70 TCGA-AC-A23H-01 18 34647462 34647462 C T KIAA1328 Missense_Mutation p.L396F 0.31 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 18 34802029 34802029 G A KIAA1328 Missense_Mutation p.A525T 0.60 tolerated(0.06) benign(0.186) TCGA-AC-A23H-01 18 35145335 35145335 G T CELF4 Missense_Mutation p.F90L 0.35 tolerated(0.25) probably_damaging(0.996) TCGA-AC-A23H-01 18 39567853 39567853 G T PIK3C3 Missense_Mutation p.M203I 0.22 tolerated(0.17) benign(0.062) TCGA-AC-A23H-01 18 39623707 39623707 G C PIK3C3 Missense_Mutation p.R705T 0.42 deleterious(0) possibly_damaging(0.897) TCGA-AC-A23H-01 18 42281455 42281455 C T SETBP1 Silent p.I48I 0.34 TCGA-AC-A23H-01 18 43523998 43523998 G A EPG5 Nonsense_Mutation p.Q589* 0.36 TCGA-AC-A23H-01 18 43532580 43532580 G A EPG5 Silent p.F346F 0.14 TCGA-AC-A23H-01 18 44398376 44398376 C T PIAS2 Intron 0.63 TCGA-AC-A23H-01 18 44549089 44549089 C G TCEB3CL Missense_Mutation p.E404Q 0.10 deleterious(0.04) probably_damaging(0.913) TCGA-AC-A23H-01 18 44561197 44561197 G T TCEB3B Missense_Mutation p.H147N 0.30 tolerated(0.31) benign(0.026) TCGA-AC-A23H-01 18 47017915 47017915 C T RPL17 Silent p.E9E 0.31 TCGA-AC-A23H-01 18 47438438 47438438 G A MYO5B Silent p.L732L 0.28 TCGA-AC-A23H-01 18 47908574 47908574 C T SKA1 Nonsense_Mutation p.Q97* 0.24 TCGA-AC-A23H-01 18 48465962 48465962 C T ME2 Silent p.L480L 0.26 TCGA-AC-A23H-01 18 48513353 48513353 T A ELAC1 Missense_Mutation p.D330E 0.35 tolerated(0.25) benign(0.021) TCGA-AC-A23H-01 18 48575200 48575200 C T SMAD4 Missense_Mutation p.H132Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 18 48703903 48703903 G C MEX3C Missense_Mutation p.I266M 0.29 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 18 50918123 50918123 G A DCC Missense_Mutation p.A852T 0.34 deleterious(0.01) possibly_damaging(0.801) TCGA-AC-A23H-01 18 51820803 51820803 G C POLI Missense_Mutation p.R730T 0.41 tolerated_low_confidence(0.1) benign(0.008) TCGA-AC-A23H-01 18 52265215 52265215 G C DYNAP Missense_Mutation p.V158L 0.35 tolerated(0.14) benign(0.08) TCGA-AC-A23H-01 18 5398129 5398129 G A EPB41L3 Missense_Mutation p.S788F 0.48 tolerated(0.06) possibly_damaging(0.602) TCGA-AC-A23H-01 18 55103430 55103430 C G ONECUT2 Missense_Mutation p.S161C 0.31 deleterious(0) probably_damaging(0.962) TCGA-AC-A23H-01 18 56202473 56202473 G A ALPK2 Missense_Mutation p.S1649L 0.34 tolerated(0.14) benign(0.001) TCGA-AC-A23H-01 18 56203456 56203456 G A ALPK2 Silent p.I1321I 0.36 TCGA-AC-A23H-01 18 56400770 56400770 G C MALT1 Missense_Mutation p.G455A 0.27 tolerated(0.12) probably_damaging(1) TCGA-AC-A23H-01 18 56892941 56892941 C G GRP Missense_Mutation p.F119L 0.14 tolerated(0.34) benign(0.022) TCGA-AC-A23H-01 18 5890387 5890387 C T TMEM200C Missense_Mutation p.R559Q 0.33 tolerated(1) benign(0) TCGA-AC-A23H-01 18 59195263 59195263 G C CDH20 Missense_Mutation p.E361Q 0.25 deleterious(0.02) benign(0.009) TCGA-AC-A23H-01 18 59878437 59878437 C G KIAA1468 Nonsense_Mutation p.S193* 0.25 TCGA-AC-A23H-01 18 60646418 60646418 G A PHLPP1 Silent p.V1636V 0.42 TCGA-AC-A23H-01 18 61234181 61234181 C G SERPINB12 Silent p.L385L 0.26 TCGA-AC-A23H-01 18 61306949 61306949 C G SERPINB4 Silent p.V177V 0.35 TCGA-AC-A23H-01 18 61379843 61379843 C T SERPINB11 Silent p.F91F 0.37 TCGA-AC-A23H-01 18 6908960 6908960 C T ARHGAP28 Missense_Mutation p.H519Y 0.43 tolerated(0.12) benign(0.005) TCGA-AC-A23H-01 18 7050797 7050797 G C LAMA1 Missense_Mutation p.R162G 0.26 deleterious(0) possibly_damaging(0.778) TCGA-AC-A23H-01 18 71959113 71959113 C T CYB5A 5'UTR 0.35 TCGA-AC-A23H-01 18 77896195 77896195 G T ADNP2 Nonsense_Mutation p.E967* 0.34 TCGA-AC-A23H-01 18 8638171 8638171 G A RAB12 Missense_Mutation p.E216K 0.34 tolerated(0.06) benign(0.037) TCGA-AC-A23H-01 19 10108093 10108093 G C COL5A3 Nonsense_Mutation p.S406* 0.25 TCGA-AC-A23H-01 19 10397803 10397803 C T ICAM4 Missense_Mutation p.L39F 0.50 tolerated_low_confidence(0.19) benign(0.272) TCGA-AC-A23H-01 19 10401896 10401896 G C ICAM5 Missense_Mutation p.Q77H 0.57 tolerated(0.07) benign(0.339) TCGA-AC-A23H-01 19 10463645 10463645 C T TYK2 Missense_Mutation p.E1053K 0.24 tolerated(0.28) benign(0.259) TCGA-AC-A23H-01 19 10468728 10468728 G A TYK2 Silent p.F754F 0.18 TCGA-AC-A23H-01 19 10505732 10505732 G A CDC37 Missense_Mutation p.R231W 0.20 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 19 1056085 1056085 G A ABCA7 Missense_Mutation p.G1420E 0.16 deleterious(0.02) benign(0.055) TCGA-AC-A23H-01 19 10692015 10692015 G C AP1M2 Silent p.L200L 0.52 TCGA-AC-A23H-01 19 1083181 1083181 G A HMHA1 Silent p.G944G 0.44 TCGA-AC-A23H-01 19 10922975 10922975 C T DNM2 Silent p.I531I 0.17 TCGA-AC-A23H-01 19 11361612 11361612 C T DOCK6 Missense_Mutation p.E220K 0.24 deleterious(0.05) benign(0.094) TCGA-AC-A23H-01 19 11364389 11364389 C G DOCK6 Missense_Mutation p.E20Q 0.50 deleterious(0.05) possibly_damaging(0.451) TCGA-AC-A23H-01 19 11457221 11457221 G C CCDC159 5'UTR 0.27 TCGA-AC-A23H-01 19 11658677 11658677 C T CNN1 Silent p.F152F 0.31 TCGA-AC-A23H-01 19 11660373 11660373 G A CNN1 Missense_Mutation p.M219I 0.38 deleterious(0.04) possibly_damaging(0.902) TCGA-AC-A23H-01 19 11833998 11833998 G C ZNF823 Missense_Mutation p.I117M 0.22 tolerated(0.31) probably_damaging(0.959) TCGA-AC-A23H-01 19 11944347 11944347 C G ZNF440 3'UTR 0.17 TCGA-AC-A23H-01 19 12246603 12246603 G C ZNF20 Missense_Mutation p.F40L 0.16 tolerated(0.26) benign(0.101) TCGA-AC-A23H-01 19 12256295 12256295 G A ZNF625 Silent p.F312F 0.29 TCGA-AC-A23H-01 19 12296618 12296618 G A ZNF136 Missense_Mutation p.D8N 0.29 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 19 12432120 12432120 C T ZNF563 Missense_Mutation p.E53K 0.20 tolerated(0.1) possibly_damaging(0.493) TCGA-AC-A23H-01 19 12491909 12491909 G C CTD-3105H18.14 3'UTR 0.19 TCGA-AC-A23H-01 19 12502802 12502802 C T ZNF799 Missense_Mutation p.G137E 0.25 tolerated(0.2) probably_damaging(0.963) TCGA-AC-A23H-01 19 12637133 12637133 G C ZNF564 3'UTR 0.50 TCGA-AC-A23H-01 19 12637884 12637884 G T ZNF564 Missense_Mutation p.F346L 0.51 tolerated(0.09) possibly_damaging(0.715) TCGA-AC-A23H-01 19 12639152 12639152 C A ZNF564 Nonsense_Mutation p.E53* 0.19 TCGA-AC-A23H-01 19 1272508 1272508 G A CIRBP 3'UTR 0.24 TCGA-AC-A23H-01 19 12739748 12739748 G C ZNF791 Missense_Mutation p.E469Q 0.25 tolerated(0.1) possibly_damaging(0.688) TCGA-AC-A23H-01 19 12739988 12739988 G A ZNF791 Missense_Mutation p.E549K 0.30 deleterious(0.03) benign(0.164) TCGA-AC-A23H-01 19 12791093 12791093 G A DHPS Missense_Mutation p.A85V 0.25 tolerated(0.53) benign(0.001) TCGA-AC-A23H-01 19 12814323 12814323 G A TNPO2 Silent p.L710L 0.31 TCGA-AC-A23H-01 19 12817064 12817064 G C TNPO2 Silent p.L538L 0.23 TCGA-AC-A23H-01 19 12923949 12923949 C A RNASEH2A Missense_Mutation p.F230L 0.18 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 19 12924231 12924231 C T RNASEH2A Missense_Mutation p.S284F 0.25 deleterious(0.04) benign(0.071) TCGA-AC-A23H-01 19 12975948 12975948 G T MAST1 Nonsense_Mutation p.E532* 0.19 TCGA-AC-A23H-01 19 12976805 12976805 G A MAST1 Missense_Mutation p.E640K 0.25 deleterious(0) probably_damaging(0.976) TCGA-AC-A23H-01 19 13041506 13041506 C T FARSA Missense_Mutation p.E69K 0.34 tolerated(0.57) benign(0.018) TCGA-AC-A23H-01 19 13883024 13883024 G A MRI1 Missense_Mutation p.E347K 0.33 tolerated(0.73) benign(0.001) TCGA-AC-A23H-01 19 13923809 13923809 A T ZSWIM4 Splice_Site p.X338_splice 0.31 TCGA-AC-A23H-01 19 14006307 14006307 G A C19orf57 Silent p.F28F 0.27 TCGA-AC-A23H-01 19 14049067 14049067 C G PODNL1 5'UTR 0.17 TCGA-AC-A23H-01 19 14165650 14165650 G C PALM3 Silent p.L263L 0.26 TCGA-AC-A23H-01 19 1421163 1421163 G A DAZAP1 Missense_Mutation p.S107N 0.23 tolerated(0.28) unknown(0) TCGA-AC-A23H-01 19 1453289 1453289 G C APC2 Missense_Mutation p.R62P 0.27 possibly_damaging(0.693) TCGA-AC-A23H-01 19 1453297 1453297 G C APC2 Missense_Mutation p.V65L 0.30 benign(0.013) TCGA-AC-A23H-01 19 14758073 14758073 G C EMR3 Missense_Mutation p.Q268E 0.48 tolerated(0.19) benign(0.004) TCGA-AC-A23H-01 19 1488079 1488079 G A PCSK4 Nonsense_Mutation p.Q134* 0.26 TCGA-AC-A23H-01 19 14952650 14952650 G C OR7A10 Missense_Mutation p.L14V 0.17 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-AC-A23H-01 19 15052452 15052452 C G OR7C2 Nonsense_Mutation p.S51* 0.30 TCGA-AC-A23H-01 19 1581238 1581238 A T MBD3 Missense_Mutation p.L177Q 0.39 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 19 16000453 16000453 G C CYP4F2 Nonsense_Mutation p.S233* 0.26 TCGA-AC-A23H-01 19 16974522 16974522 C T SIN3B Missense_Mutation p.S465F 0.33 deleterious(0) possibly_damaging(0.845) TCGA-AC-A23H-01 19 17186339 17186339 G T HAUS8 5'UTR 0.18 TCGA-AC-A23H-01 19 17571358 17571358 C G NXNL1 Silent p.L107L 0.29 TCGA-AC-A23H-01 19 17571492 17571492 C G NXNL1 Missense_Mutation p.D63H 0.15 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 19 17631762 17631762 G C PGLS Missense_Mutation p.E217Q 0.29 tolerated(0.08) benign(0.261) TCGA-AC-A23H-01 19 17657552 17657552 G A FAM129C Missense_Mutation p.E569K 0.17 tolerated(0.07) benign(0.094) TCGA-AC-A23H-01 19 17918868 17918868 C T B3GNT3 Silent p.L84L 0.27 TCGA-AC-A23H-01 19 17927528 17927528 G A INSL3 3'UTR 0.28 TCGA-AC-A23H-01 19 17937556 17937556 G A JAK3 Missense_Mutation p.S1124L 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-AC-A23H-01 19 17951135 17951135 G A JAK3 Silent p.I386I 0.21 TCGA-AC-A23H-01 19 18245683 18245683 G A MAST3 Silent p.G558G 0.21 TCGA-AC-A23H-01 19 18249895 18249895 G C MAST3 Missense_Mutation p.E693D 0.28 tolerated(0.05) benign(0.011) TCGA-AC-A23H-01 19 18257798 18257798 G C MAST3 Missense_Mutation p.K1061N 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-AC-A23H-01 19 18260466 18260466 C T MAST3 Missense_Mutation p.S1287L 0.40 tolerated_low_confidence(0.28) benign(0) TCGA-AC-A23H-01 19 18331210 18331210 C A PDE4C Intron 0.23 TCGA-AC-A23H-01 19 18497130 18497130 C G GDF15 Nonsense_Mutation p.S44* 0.30 TCGA-AC-A23H-01 19 18649051 18649051 G C FKBP8 Missense_Mutation p.I249M 0.25 deleterious(0.01) possibly_damaging(0.908) TCGA-AC-A23H-01 19 18960956 18960956 G A UPF1 Silent p.E178E 0.37 TCGA-AC-A23H-01 19 19230867 19230867 G C TMEM161A Missense_Mutation p.L438V 0.25 deleterious(0.04) benign(0.167) TCGA-AC-A23H-01 19 19338413 19338413 G A NCAN Missense_Mutation p.E662K 0.16 tolerated(0.08) benign(0.007) TCGA-AC-A23H-01 19 19748735 19748735 C T GMIP Silent p.L307L 0.42 TCGA-AC-A23H-01 19 19751358 19751358 G A GMIP Silent p.L87L 0.21 TCGA-AC-A23H-01 19 19822358 19822358 C T ZNF14 Missense_Mutation p.E578K 0.18 tolerated(0.24) benign(0.056) TCGA-AC-A23H-01 19 19823866 19823866 C G ZNF14 Missense_Mutation p.R75T 0.23 tolerated(0.13) benign(0.018) TCGA-AC-A23H-01 19 19823883 19823883 C G ZNF14 Missense_Mutation p.E69D 0.16 deleterious(0.05) benign(0.197) TCGA-AC-A23H-01 19 20045094 20045094 G T ZNF93 Nonsense_Mutation p.E444* 0.18 TCGA-AC-A23H-01 19 20229273 20229273 A - ZNF90 Frame_Shift_Del p.K304Rfs*2 0.08 TCGA-AC-A23H-01 19 20236359 20236359 G - CTC-260E6.2 3'Flank 0.38 TCGA-AC-A23H-01 19 2097473 2097473 A C IZUMO4 Missense_Mutation p.I117L 0.15 tolerated(0.43) benign(0.001) TCGA-AC-A23H-01 19 21300392 21300392 G A ZNF714 Missense_Mutation p.G308R 0.23 tolerated(0.07) possibly_damaging(0.906) TCGA-AC-A23H-01 19 21301552 21301552 C T ZNF714 3'UTR 0.25 TCGA-AC-A23H-01 19 21933944 21933944 G T ZNF100 Intron 0.19 TCGA-AC-A23H-01 19 21991413 21991413 G A ZNF43 Missense_Mutation p.H476Y 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-AC-A23H-01 19 22155684 22155684 C G ZNF208 Missense_Mutation p.E718Q 0.12 deleterious(0.02) benign(0.199) TCGA-AC-A23H-01 19 22156324 22156324 T C ZNF208 Silent p.K504K 0.28 TCGA-AC-A23H-01 19 22157244 22157244 C G ZNF208 Missense_Mutation p.E198Q 0.27 tolerated(0.08) benign(0.065) TCGA-AC-A23H-01 19 22782528 22782528 G C AC011467.1 5'Flank 0.29 TCGA-AC-A23H-01 19 22786091 22786091 C T AC011467.1 3'Flank 0.23 TCGA-AC-A23H-01 19 22942449 22942449 C G ZNF99 Missense_Mutation p.D88H 0.21 tolerated(0.09) possibly_damaging(0.732) TCGA-AC-A23H-01 19 23159602 23159602 G C ZNF728 Silent p.V179V 0.53 TCGA-AC-A23H-01 19 23544861 23544861 G A ZNF91 Missense_Mutation p.S307L 0.21 deleterious(0.01) benign(0.307) TCGA-AC-A23H-01 19 23926234 23926234 C T ZNF681 3'UTR 0.38 TCGA-AC-A23H-01 19 23926995 23926995 C T ZNF681 Missense_Mutation p.E453K 0.27 tolerated(0.14) possibly_damaging(0.874) TCGA-AC-A23H-01 19 23941676 23941676 C G ZNF681 5'UTR 0.28 TCGA-AC-A23H-01 19 2430864 2430864 C T LMNB2 3'UTR 0.22 TCGA-AC-A23H-01 19 2434313 2434313 G C LMNB2 Silent p.L394L 0.13 TCGA-AC-A23H-01 19 2799707 2799707 G C THOP1 Missense_Mutation p.K169N 0.27 tolerated(0.08) benign(0.25) TCGA-AC-A23H-01 19 2852869 2852869 C G ZNF555 Nonsense_Mutation p.S269* 0.29 TCGA-AC-A23H-01 19 2934275 2934275 G A ZNF77 Nonsense_Mutation p.R284* 0.25 TCGA-AC-A23H-01 19 29698424 29698424 G A UQCRFS1 3'UTR 0.17 TCGA-AC-A23H-01 19 2997923 2997923 C G TLE2 Missense_Mutation p.D719H 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 19 3005795 3005795 C T TLE2 Missense_Mutation p.D558N 0.31 deleterious(0.03) possibly_damaging(0.858) TCGA-AC-A23H-01 19 3118977 3118977 G C GNA11 Missense_Mutation p.E221Q 0.22 deleterious(0.02) benign(0.109) TCGA-AC-A23H-01 19 31770204 31770204 G A TSHZ3 Silent p.F165F 0.18 TCGA-AC-A23H-01 19 32844181 32844181 C T ZNF507 Nonsense_Mutation p.Q149* 0.46 TCGA-AC-A23H-01 19 33263720 33263720 G A TDRD12 Silent p.K309K 0.20 TCGA-AC-A23H-01 19 33334770 33334770 G A SLC7A9 Silent p.I355I 0.08 TCGA-AC-A23H-01 19 33353106 33353106 C T SLC7A9 Missense_Mutation p.D208N 0.36 tolerated(0.34) benign(0.002) TCGA-AC-A23H-01 19 33424388 33424388 G C CEP89 Silent p.L285L 0.29 TCGA-AC-A23H-01 19 33579138 33579138 T A GPATCH1 Missense_Mutation p.S58T 0.19 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 19 33579139 33579139 C T GPATCH1 Missense_Mutation p.S58F 0.19 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 19 34712455 34712455 G A LSM14A Missense_Mutation p.E394K 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 19 34916975 34916975 G A PDCD2L Missense_Mutation p.E343K 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-AC-A23H-01 19 35232203 35232203 C A ZNF181 Nonsense_Mutation p.S306* 0.17 TCGA-AC-A23H-01 19 35435446 35435446 T C ZNF30 Missense_Mutation p.Y527H 0.50 tolerated(0.76) benign(0.402) TCGA-AC-A23H-01 19 35533321 35533321 C T HPN 5'UTR 0.25 TCGA-AC-A23H-01 19 35632070 35632070 C T FXYD1 Silent p.I43I 0.19 TCGA-AC-A23H-01 19 3575618 3575618 G A HMG20B Silent p.K144K 0.16 TCGA-AC-A23H-01 19 35790530 35790530 C A MAG Missense_Mutation p.D163E 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 19 35941621 35941621 G T FFAR2 3'UTR 0.25 TCGA-AC-A23H-01 19 36041913 36041913 G A ATP4A Missense_Mutation p.R996W 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-AC-A23H-01 19 36054383 36054383 C T ATP4A Missense_Mutation p.G20E 0.30 tolerated(1) probably_damaging(0.993) TCGA-AC-A23H-01 19 36110323 36110323 C T HAUS5 Intron 0.17 TCGA-AC-A23H-01 19 36164157 36164157 C G UPK1A Silent p.V103V 0.14 TCGA-AC-A23H-01 19 36207599 36207599 C G ZBTB32 Missense_Mutation p.S470W 0.21 deleterious_low_confidence(0) unknown(0) TCGA-AC-A23H-01 19 36211033 36211033 C T KMT2B Nonsense_Mutation p.Q262* 0.24 TCGA-AC-A23H-01 19 36216490 36216490 C T KMT2B Silent p.F1251F 0.28 TCGA-AC-A23H-01 19 36257746 36257746 G C C19orf55 Missense_Mutation p.E283Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 19 36303418 36303418 G C PRODH2 Nonsense_Mutation p.S148* 0.19 TCGA-AC-A23H-01 19 36322203 36322203 A G NPHS1 Missense_Mutation p.S1128P 0.16 deleterious(0.04) possibly_damaging(0.68) TCGA-AC-A23H-01 19 36322207 36322207 C G NPHS1 Missense_Mutation p.Q1126H 0.15 tolerated(0.13) benign(0.332) TCGA-AC-A23H-01 19 36362197 36362197 G C APLP1 Missense_Mutation p.Q161H 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-AC-A23H-01 19 3638912 3638912 C T PIP5K1C Silent p.E630E 0.36 TCGA-AC-A23H-01 19 36558877 36558877 G C WDR62 Missense_Mutation p.E283Q 0.23 deleterious(0.04) possibly_damaging(0.729) TCGA-AC-A23H-01 19 36606818 36606818 G A TBCB Intron 0.46 TCGA-AC-A23H-01 19 36728111 36728111 C G ZNF146 Missense_Mutation p.L257V 0.31 tolerated(0.52) possibly_damaging(0.745) TCGA-AC-A23H-01 19 37210521 37210521 C T ZNF567 Missense_Mutation p.H268Y 0.08 deleterious(0) probably_damaging(0.983) TCGA-AC-A23H-01 19 37239801 37239801 G A ZNF850 Missense_Mutation p.S714L 0.36 deleterious(0.04) probably_damaging(0.942) TCGA-AC-A23H-01 19 37314687 37314687 C T ZNF790 Missense_Mutation p.M5I 0.20 deleterious(0.04) benign(0.016) TCGA-AC-A23H-01 19 37619746 37619746 G A ZNF420 Missense_Mutation p.R618K 0.25 tolerated(1) benign(0) TCGA-AC-A23H-01 19 37698137 37698137 C T ZNF585B 5'UTR 0.26 TCGA-AC-A23H-01 19 37733697 37733697 C T ZNF383 Nonsense_Mutation p.Q187* 0.30 TCGA-AC-A23H-01 19 3779175 3779175 C G MATK Missense_Mutation p.E339Q 0.32 tolerated(0.32) benign(0.296) TCGA-AC-A23H-01 19 37880509 37880509 C T ZNF527 Missense_Mutation p.H520Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 19 37975205 37975205 C T ZNF570 Silent p.F227F 0.23 TCGA-AC-A23H-01 19 38102639 38102639 G C ZNF540 Missense_Mutation p.R153T 0.20 tolerated(0.66) benign(0.018) TCGA-AC-A23H-01 19 38126340 38126340 G C ZFP30 Missense_Mutation p.H368D 0.25 tolerated(0.14) probably_damaging(0.998) TCGA-AC-A23H-01 19 3813855 3813855 G C ZFR2 Silent p.T735T 0.32 TCGA-AC-A23H-01 19 38160237 38160237 G C ZNF781 Silent p.L271L 0.22 TCGA-AC-A23H-01 19 38160561 38160561 G A ZNF781 Silent p.I163I 0.25 TCGA-AC-A23H-01 19 38160578 38160578 G A ZNF781 Nonsense_Mutation p.Q158* 0.17 TCGA-AC-A23H-01 19 38160630 38160630 C T ZNF781 Silent p.L140L 0.22 TCGA-AC-A23H-01 19 3852357 3852357 G A ZFR2 Intron 0.39 TCGA-AC-A23H-01 19 38795047 38795047 G A C19orf33 Missense_Mutation p.G19R 0.35 deleterious_low_confidence(0) benign(0.366) TCGA-AC-A23H-01 19 38896172 38896172 C G FAM98C Missense_Mutation p.S216C 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-AC-A23H-01 19 38979988 38979988 G T RYR1 Nonsense_Mutation p.E1907* 0.27 TCGA-AC-A23H-01 19 39075591 39075591 G C RYR1 Silent p.L4885L 0.22 TCGA-AC-A23H-01 19 39105070 39105070 G A MAP4K1 Missense_Mutation p.S110L 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-AC-A23H-01 19 39123118 39123118 G C EIF3K Missense_Mutation p.E135Q 0.25 tolerated(0.05) benign(0.359) TCGA-AC-A23H-01 19 39329203 39329203 G A HNRNPL Missense_Mutation p.S464L 0.43 tolerated(0.51) benign(0.065) TCGA-AC-A23H-01 19 39412197 39412197 C T SARS2 Silent p.L170L 0.16 TCGA-AC-A23H-01 19 39416865 39416865 C A SARS2 Nonsense_Mutation p.E115* 0.18 TCGA-AC-A23H-01 19 39668392 39668392 C G PAK4 Silent p.L521L 0.19 TCGA-AC-A23H-01 19 39668417 39668417 A - PAK4 Frame_Shift_Del p.N530Tfs*6 0.22 TCGA-AC-A23H-01 19 3977868 3977868 G C EEF2 Silent p.L672L 0.32 TCGA-AC-A23H-01 19 39899202 39899202 G A ZFP36 Missense_Mutation p.D288N 0.25 deleterious(0.04) possibly_damaging(0.864) TCGA-AC-A23H-01 19 39904788 39904788 G A PLEKHG2 Missense_Mutation p.R21Q 0.18 deleterious_low_confidence(0.03) benign(0.117) TCGA-AC-A23H-01 19 39909616 39909616 G C PLEKHG2 Missense_Mutation p.E412D 0.30 deleterious_low_confidence(0.01) benign(0.41) TCGA-AC-A23H-01 19 39915317 39915317 C T PLEKHG2 Missense_Mutation p.P1182S 0.21 deleterious_low_confidence(0.03) benign(0.009) TCGA-AC-A23H-01 19 39963950 39963950 C G SUPT5H Nonsense_Mutation p.S789* 0.28 TCGA-AC-A23H-01 19 39978708 39978708 C G TIMM50 Nonsense_Mutation p.S338* 0.22 TCGA-AC-A23H-01 19 39989620 39989620 C T DLL3 Silent p.V2V 0.36 TCGA-AC-A23H-01 19 40362869 40362869 C T FCGBP Silent p.L5067L 0.33 TCGA-AC-A23H-01 19 4037620 4037620 C T PIAS4 Missense_Mutation p.S427L 0.27 tolerated(0.08) benign(0.001) TCGA-AC-A23H-01 19 40408831 40408831 C T FCGBP Missense_Mutation p.M1336I 0.30 benign(0.173) TCGA-AC-A23H-01 19 40480442 40480442 G C PSMC4 Missense_Mutation p.D161H 0.16 deleterious(0.01) possibly_damaging(0.614) TCGA-AC-A23H-01 19 4048230 4048230 C T ZBTB7A Silent p.L425L 0.54 TCGA-AC-A23H-01 19 40521389 40521389 C G ZNF546 Missense_Mutation p.Q738E 0.17 tolerated(1) benign(0.149) TCGA-AC-A23H-01 19 40521692 40521692 G C ZNF546 3'UTR 0.38 TCGA-AC-A23H-01 19 4054874 4054874 C T ZBTB7A Silent p.V119V 0.43 TCGA-AC-A23H-01 19 40698484 40698484 G A MAP3K10 Silent p.L182L 0.60 TCGA-AC-A23H-01 19 40827854 40827854 C G C19orf47 Missense_Mutation p.G402R 0.24 deleterious(0.01) possibly_damaging(0.85) TCGA-AC-A23H-01 19 40928711 40928711 C T SERTAD1 3'UTR 0.20 TCGA-AC-A23H-01 19 4117570 4117570 C G MAP2K2 Missense_Mutation p.Q50H 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 19 41243662 41243662 C G ITPKC Missense_Mutation p.F612L 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A23H-01 19 41282962 41282962 G C MIA Missense_Mutation p.G117A 0.13 tolerated(0.85) benign(0.004) TCGA-AC-A23H-01 19 41292818 41292818 C T RAB4B Missense_Mutation p.R198W 0.39 deleterious(0) possibly_damaging(0.696) TCGA-AC-A23H-01 19 41774180 41774180 C T HNRNPUL1 Silent p.I116I 0.21 TCGA-AC-A23H-01 19 4182580 4182580 C T SIRT6 5'UTR 0.32 TCGA-AC-A23H-01 19 4200135 4200135 C T ANKRD24 Missense_Mutation p.H104Y 0.30 deleterious(0) benign(0.055) TCGA-AC-A23H-01 19 42314883 42314883 C A CEACAM3 Missense_Mutation p.S214Y 0.21 deleterious(0) possibly_damaging(0.831) TCGA-AC-A23H-01 19 42392344 42392344 G C ARHGEF1 Missense_Mutation p.E51Q 0.27 deleterious(0.04) benign(0.353) TCGA-AC-A23H-01 19 42595625 42595625 C G POU2F2 3'UTR 0.27 TCGA-AC-A23H-01 19 42730115 42730115 G T ZNF526 Silent p.L520L 0.32 TCGA-AC-A23H-01 19 42744160 42744160 C A AC006486.9 Nonsense_Mutation p.E53* 0.25 TCGA-AC-A23H-01 19 42797401 42797401 G C CIC Missense_Mutation p.E1255Q 0.36 benign(0.102) TCGA-AC-A23H-01 19 42909602 42909615 GAGGAGGCACCCAG - LIPE Frame_Shift_Del p.L822Mfs*30 0.35 TCGA-AC-A23H-01 19 4292794 4292794 C T TMIGD2 Silent p.R217R 0.23 TCGA-AC-A23H-01 19 42930419 42930419 C T LIPE Missense_Mutation p.A295T 0.20 deleterious_low_confidence(0.05) possibly_damaging(0.611) TCGA-AC-A23H-01 19 43023314 43023314 C T CEACAM1 Silent p.V344V 0.19 TCGA-AC-A23H-01 19 43371148 43371148 C G PSG1 3'Flank 0.34 TCGA-AC-A23H-01 19 43411950 43411950 C A PSG6 Missense_Mutation p.D255Y 0.23 deleterious(0.04) probably_damaging(0.956) TCGA-AC-A23H-01 19 43430867 43430867 C T PSG7 Silent p.P237P 0.29 TCGA-AC-A23H-01 19 43519417 43519417 G C PSG11 Missense_Mutation p.S272C 0.22 deleterious(0.02) possibly_damaging(0.872) TCGA-AC-A23H-01 19 43683134 43683134 G C PSG5 Intron 0.27 TCGA-AC-A23H-01 19 43772168 43772168 G C PSG9 Missense_Mutation p.F66L 0.25 tolerated(0.65) benign(0.009) TCGA-AC-A23H-01 19 44047576 44047576 G A XRCC1 Missense_Mutation p.H624Y 0.26 tolerated(0.69) benign(0.059) TCGA-AC-A23H-01 19 44302971 44302971 C T LYPD5 Silent p.L121L 0.56 TCGA-AC-A23H-01 19 44302988 44302988 C G LYPD5 Missense_Mutation p.D116H 0.77 deleterious(0.02) probably_damaging(0.946) TCGA-AC-A23H-01 19 4430576 4430576 G A CHAF1A Missense_Mutation p.D629N 0.23 deleterious(0.02) possibly_damaging(0.893) TCGA-AC-A23H-01 19 4430579 4430579 G A CHAF1A Missense_Mutation p.E630K 0.22 deleterious(0.01) probably_damaging(0.964) TCGA-AC-A23H-01 19 44351412 44351412 C G ZNF283 Nonsense_Mutation p.S220* 0.24 TCGA-AC-A23H-01 19 44680265 44680265 G C ZNF226 Missense_Mutation p.E284Q 0.19 tolerated(0.22) benign(0.006) TCGA-AC-A23H-01 19 44739132 44739132 G A ZNF227 Silent p.L183L 0.35 TCGA-AC-A23H-01 19 44832306 44832306 G A ZNF112 Silent p.F674F 0.24 TCGA-AC-A23H-01 19 44891869 44891869 G C ZNF285 Missense_Mutation p.Q180E 0.19 tolerated(0.2) benign(0.002) TCGA-AC-A23H-01 19 44934510 44934510 G A ZNF229 Missense_Mutation p.P149L 0.29 tolerated(0.09) benign(0) TCGA-AC-A23H-01 19 44980940 44980940 G A ZNF180 Silent p.F586F 0.31 TCGA-AC-A23H-01 19 44981513 44981513 G C ZNF180 Missense_Mutation p.H395Q 0.29 tolerated(0.33) probably_damaging(0.998) TCGA-AC-A23H-01 19 44981616 44981616 G A ZNF180 Missense_Mutation p.S361F 0.20 deleterious(0) probably_damaging(0.956) TCGA-AC-A23H-01 19 4525716 4525716 C T PLIN5 Missense_Mutation p.V217M 0.31 deleterious(0.01) benign(0.006) TCGA-AC-A23H-01 19 4538710 4538710 C T LRG1 Missense_Mutation p.E96K 0.20 deleterious(0) possibly_damaging(0.725) TCGA-AC-A23H-01 19 4538901 4538901 G C LRG1 Nonsense_Mutation p.S32* 0.20 TCGA-AC-A23H-01 19 45873606 45873606 C G ERCC2 Intron 0.44 TCGA-AC-A23H-01 19 45885896 45885896 G C PPP1R13L Missense_Mutation p.F779L 0.23 tolerated(0.05) possibly_damaging(0.593) TCGA-AC-A23H-01 19 45974376 45974376 G A FOSB Intron 0.29 TCGA-AC-A23H-01 19 45975845 45975845 G C FOSB Missense_Mutation p.E198Q 0.23 tolerated(1) possibly_damaging(0.728) TCGA-AC-A23H-01 19 46024577 46024577 C G VASP Intron 0.25 TCGA-AC-A23H-01 19 46029456 46029456 C T VASP 3'UTR 0.21 TCGA-AC-A23H-01 19 46087996 46087996 C G OPA3 Silent p.A9A 0.18 TCGA-AC-A23H-01 19 46124794 46124794 C T EML2 Missense_Mutation p.D516N 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 19 46334773 46334773 G C SYMPK Missense_Mutation p.I489M 0.22 tolerated(0.14) possibly_damaging(0.862) TCGA-AC-A23H-01 19 4652151 4652151 C T TNFAIP8L1 Silent p.F90F 0.29 TCGA-AC-A23H-01 19 46543498 46543498 G C IGFL4 Missense_Mutation p.Q83E 0.20 tolerated(0.11) probably_damaging(0.953) TCGA-AC-A23H-01 19 46886682 46886682 C T PPP5C Silent p.V216V 0.27 TCGA-AC-A23H-01 19 4689735 4689735 C T DPP9 Splice_Site p.X533_splice 0.14 TCGA-AC-A23H-01 19 4714287 4714287 C T DPP9 Missense_Mutation p.R40Q 0.30 tolerated(0.57) benign(0.002) TCGA-AC-A23H-01 19 47184973 47184973 C G PRKD2 Missense_Mutation p.K668N 0.09 deleterious(0.02) probably_damaging(0.977) TCGA-AC-A23H-01 19 47422622 47422622 G A ARHGAP35 Silent p.A230A 0.22 TCGA-AC-A23H-01 19 47634224 47634224 G C SAE1 Missense_Mutation p.E13Q 0.50 deleterious(0) unknown(0) TCGA-AC-A23H-01 19 47856605 47856605 C T DHX34 Silent p.I106I 0.21 TCGA-AC-A23H-01 19 47978782 47978782 G A KPTN Missense_Mutation p.S401L 0.28 deleterious(0.01) benign(0.108) TCGA-AC-A23H-01 19 47978789 47978789 G T KPTN Missense_Mutation p.Q399K 0.29 tolerated(0.51) benign(0.122) TCGA-AC-A23H-01 19 48018097 48018097 C G NAPA Intron 0.11 TCGA-AC-A23H-01 19 48631251 48631251 G A LIG1 Silent p.F616F 0.43 TCGA-AC-A23H-01 19 48734038 48734038 G C CARD8 Silent p.L256L 0.21 TCGA-AC-A23H-01 19 48785657 48785657 G A ZNF114 Silent p.V13V 0.28 TCGA-AC-A23H-01 19 48967728 48967728 C G KCNJ14 Silent p.L335L 0.24 TCGA-AC-A23H-01 19 48968001 48968001 C A KCNJ14 Silent p.L426L 0.16 TCGA-AC-A23H-01 19 49004371 49004371 C G LMTK3 Missense_Mutation p.E374Q 0.50 probably_damaging(0.999) TCGA-AC-A23H-01 19 49224031 49224031 C G RASIP1 3'UTR 0.32 TCGA-AC-A23H-01 19 49391496 49391496 C G TULP2 Missense_Mutation p.R220T 0.26 tolerated(0.08) benign(0.05) TCGA-AC-A23H-01 19 49422292 49422292 G C NUCB1 Missense_Mutation p.E274D 0.19 tolerated(0.21) probably_damaging(0.963) TCGA-AC-A23H-01 19 49425159 49425159 G C NUCB1 Missense_Mutation p.E417Q 0.33 tolerated(0.27) benign(0.007) TCGA-AC-A23H-01 19 49445702 49445702 G C DHDH Missense_Mutation p.D209H 0.15 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 19 49464088 49464088 G A BAX Missense_Mutation p.E131K 0.28 tolerated(0.15) benign(0.106) TCGA-AC-A23H-01 19 49464892 49464892 G A BAX 3'UTR 0.22 TCGA-AC-A23H-01 19 4947193 4947193 C G UHRF1 RNA 0.19 TCGA-AC-A23H-01 19 49497062 49497062 G A RUVBL2 5'UTR 0.27 TCGA-AC-A23H-01 19 49517738 49517744 CAGAATC - RUVBL2 Splice_Site p.X334_splice 0.25 TCGA-AC-A23H-01 19 49538904 49538904 G T CGB1 Missense_Mutation p.P144H 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-AC-A23H-01 19 4956731 4956731 C A UHRF1 RNA 0.35 TCGA-AC-A23H-01 19 49621638 49621638 G A LIN7B 3'UTR 0.16 TCGA-AC-A23H-01 19 49657064 49657064 C G HRC Missense_Mutation p.L477F 0.30 tolerated(0.12) benign(0.019) TCGA-AC-A23H-01 19 49703955 49703955 G A TRPM4 Missense_Mutation p.D956N 0.19 deleterious(0.02) benign(0.266) TCGA-AC-A23H-01 19 50102590 50102590 C T PRR12 Missense_Mutation p.S1247L 0.26 possibly_damaging(0.504) TCGA-AC-A23H-01 19 50155966 50155966 G T SCAF1 Missense_Mutation p.D774Y 0.16 unknown(0) TCGA-AC-A23H-01 19 50156060 50156060 C G SCAF1 Nonsense_Mutation p.S805* 0.31 TCGA-AC-A23H-01 19 50165237 50165237 C T IRF3 Missense_Mutation p.G317E 0.30 tolerated(0.18) probably_damaging(0.997) TCGA-AC-A23H-01 19 50176987 50176987 G C BCL2L12 Missense_Mutation p.L329F 0.49 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-AC-A23H-01 19 50177004 50177004 G A BCL2L12 Silent p.%3D 0.48 TCGA-AC-A23H-01 19 50195590 50195590 G A CPT1C Silent p.V27V 0.67 TCGA-AC-A23H-01 19 50210805 50210805 C G CPT1C Silent p.V458V 0.32 TCGA-AC-A23H-01 19 50310318 50310318 C T FUZ 3'UTR 0.31 TCGA-AC-A23H-01 19 50549316 50549316 G C ZNF473 Missense_Mutation p.R539T 0.27 tolerated(0.22) benign(0.227) TCGA-AC-A23H-01 19 50783297 50783297 G A MYH14 Missense_Mutation p.E1346K 0.33 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 19 50954172 50954172 C G MYBPC2 Missense_Mutation p.S520W 0.16 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 19 51190856 51190856 G C SHANK1 Nonsense_Mutation p.S791* 0.25 TCGA-AC-A23H-01 19 51219646 51219646 G A SHANK1 Silent p.L115L 0.11 TCGA-AC-A23H-01 19 51219679 51219679 G C SHANK1 Silent p.L104L 0.14 TCGA-AC-A23H-01 19 51274289 51274289 C G GPR32 Silent p.L144L 0.26 TCGA-AC-A23H-01 19 51323205 51323205 C G KLK1 Missense_Mutation p.D195H 0.13 deleterious(0) possibly_damaging(0.796) TCGA-AC-A23H-01 19 51455866 51455866 G C KLK5 Missense_Mutation p.I16M 0.40 tolerated(0.12) possibly_damaging(0.655) TCGA-AC-A23H-01 19 51503887 51503887 G C KLK8 Missense_Mutation p.S53W 0.22 tolerated(0.23) benign(0) TCGA-AC-A23H-01 19 51528000 51528000 G A KLK11 Missense_Mutation p.H63Y 0.18 deleterious(0.01) possibly_damaging(0.853) TCGA-AC-A23H-01 19 51528904 51528904 G A KLK11 Missense_Mutation p.S27F 0.33 deleterious(0.01) benign(0.057) TCGA-AC-A23H-01 19 51728396 51728396 C G CD33 Missense_Mutation p.P8A 0.21 tolerated(1) possibly_damaging(0.539) TCGA-AC-A23H-01 19 51767167 51767167 G A SIGLECL1 5'UTR 0.28 TCGA-AC-A23H-01 19 51844894 51844894 G A VSIG10L Silent p.F136F 0.20 TCGA-AC-A23H-01 19 51871790 51871790 G A CLDND2 Silent p.L14L 0.26 TCGA-AC-A23H-01 19 52034085 52034085 C A SIGLEC6 Missense_Mutation p.A186S 0.21 tolerated(0.58) possibly_damaging(0.775) TCGA-AC-A23H-01 19 5221138 5221138 G A PTPRS Nonsense_Mutation p.Q1110* 0.24 TCGA-AC-A23H-01 19 52403474 52403474 G C ZNF649 5'UTR 0.29 TCGA-AC-A23H-01 19 52448792 52448792 G A ZNF613 Silent p.E552E 0.33 TCGA-AC-A23H-01 19 52469055 52469055 C G ZNF350 Missense_Mutation p.K217N 0.18 deleterious(0) possibly_damaging(0.691) TCGA-AC-A23H-01 19 52472315 52472315 G A ZNF350 Nonsense_Mutation p.Q29* 0.27 TCGA-AC-A23H-01 19 52537581 52537581 G A ZNF432 Missense_Mutation p.H451Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 19 52543831 52543831 G C ZNF432 Missense_Mutation p.Q50E 0.24 tolerated(0.13) benign(0.001) TCGA-AC-A23H-01 19 52785131 52785131 G C ZNF766 Intron 0.28 TCGA-AC-A23H-01 19 52870042 52870042 G C ZNF610 3'UTR 0.12 TCGA-AC-A23H-01 19 52919993 52919993 G A ZNF528 3'UTR 0.23 TCGA-AC-A23H-01 19 52938380 52938380 G C ZNF534 Missense_Mutation p.K76N 0.24 tolerated(0.36) benign(0.032) TCGA-AC-A23H-01 19 53079145 53079145 C T ZNF701 Intron 0.25 TCGA-AC-A23H-01 19 53117179 53117179 G C ZNF83 Silent p.V213V 0.22 TCGA-AC-A23H-01 19 53303166 53303166 G A ZNF28 Silent p.F644F 0.25 TCGA-AC-A23H-01 19 53345029 53345029 G A ZNF468 Missense_Mutation p.S173L 0.20 tolerated(0.27) possibly_damaging(0.587) TCGA-AC-A23H-01 19 53384069 53384069 C A ZNF320 Missense_Mutation p.G437V 0.26 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 19 53643729 53643729 C G ZNF347 Missense_Mutation p.Q785H 0.21 tolerated(0.21) benign(0.018) TCGA-AC-A23H-01 19 53793698 53793698 C G BIRC8 5'UTR 0.15 TCGA-AC-A23H-01 19 53793825 53793825 C T BIRC8 5'UTR 0.18 TCGA-AC-A23H-01 19 53848773 53848773 C A ZNF845 Missense_Mutation p.F10L 0.25 tolerated(0.08) probably_damaging(0.966) TCGA-AC-A23H-01 19 53913734 53913734 G C ZNF765 3'UTR 0.38 TCGA-AC-A23H-01 19 53959979 53959979 C T ZNF761 RNA 0.46 TCGA-AC-A23H-01 19 53960085 53960085 G A ZNF761 RNA 0.21 TCGA-AC-A23H-01 19 53993818 53993818 C T ZNF813 Missense_Mutation p.A111V 0.13 tolerated(1) possibly_damaging(0.589) TCGA-AC-A23H-01 19 54238214 54238214 G C MIR518D RNA 0.15 TCGA-AC-A23H-01 19 54646686 54646686 G A CNOT3 5'UTR 0.18 TCGA-AC-A23H-01 19 54705145 54705145 G T RPS9 Silent p.L31L 0.16 TCGA-AC-A23H-01 19 54721331 54721331 C T LILRB3 Missense_Mutation p.E537K 0.17 tolerated(0.06) benign(0.201) TCGA-AC-A23H-01 19 54848842 54848842 C T LILRA4 Missense_Mutation p.D261N 0.25 tolerated(0.19) benign(0.009) TCGA-AC-A23H-01 19 549711 549711 G T GZMM Missense_Mutation p.D232Y 0.36 deleterious(0) probably_damaging(0.97) TCGA-AC-A23H-01 19 55284901 55284901 G C KIR2DL1 Missense_Mutation p.E63Q 0.59 tolerated(0.08) probably_damaging(0.998) TCGA-AC-A23H-01 19 55331322 55331322 G T KIR3DL1 Missense_Mutation p.Q170H 0.20 deleterious(0.03) benign(0.055) TCGA-AC-A23H-01 19 55351126 55351126 G C KIR2DS4 Missense_Mutation p.R205P 0.24 tolerated_low_confidence(0.12) benign(0.002) TCGA-AC-A23H-01 19 55449562 55449562 G C NLRP7 Missense_Mutation p.S660C 0.36 tolerated(0.21) possibly_damaging(0.775) TCGA-AC-A23H-01 19 55450564 55450564 C T NLRP7 Silent p.R541R 0.25 TCGA-AC-A23H-01 19 55450673 55450673 G C NLRP7 Missense_Mutation p.S505C 0.28 deleterious(0.03) probably_damaging(0.984) TCGA-AC-A23H-01 19 55543613 55543613 G C GP6 Silent p.L73L 0.52 TCGA-AC-A23H-01 19 55645252 55645252 C G TNNT1 Intron 0.26 TCGA-AC-A23H-01 19 55645293 55645293 G C TNNT1 Missense_Mutation p.I251M 0.25 deleterious(0.05) benign(0.086) TCGA-AC-A23H-01 19 55663175 55663175 C T TNNI3 3'UTR 0.28 TCGA-AC-A23H-01 19 55677313 55677313 T C DNAAF3 Silent p.L115L 0.16 TCGA-AC-A23H-01 19 55687229 55687229 G C SYT5 Missense_Mutation p.L130V 0.22 tolerated(0.31) benign(0.023) TCGA-AC-A23H-01 19 55703097 55703097 C G PTPRH Missense_Mutation p.G757A 0.29 possibly_damaging(0.713) TCGA-AC-A23H-01 19 56029199 56029199 C T SSC5D Missense_Mutation p.H1186Y 0.22 unknown(0) TCGA-AC-A23H-01 19 56029433 56029433 C T SSC5D Nonsense_Mutation p.Q1264* 0.17 TCGA-AC-A23H-01 19 56160933 56160933 C G CCDC106 Missense_Mutation p.S99C 0.19 deleterious(0.04) benign(0.03) TCGA-AC-A23H-01 19 56320646 56320646 C G NLRP11 Missense_Mutation p.D444H 0.23 tolerated(0.11) benign(0.417) TCGA-AC-A23H-01 19 56329598 56329598 G T NLRP11 5'UTR 0.19 TCGA-AC-A23H-01 19 56443480 56443480 C G NLRP13 Missense_Mutation p.L66F 0.20 tolerated(0.12) benign(0.002) TCGA-AC-A23H-01 19 5692072 5692072 G A LONP1 Nonsense_Mutation p.Q951* 0.33 TCGA-AC-A23H-01 19 57035792 57035792 C G ZNF471 Missense_Mutation p.S119C 0.20 tolerated(0.05) benign(0.339) TCGA-AC-A23H-01 19 57060376 57060376 C T ZFP28 Silent p.F191F 0.22 TCGA-AC-A23H-01 19 57286215 57286215 G C ZIM2 Missense_Mutation p.F475L 0.29 deleterious(0) benign(0.381) TCGA-AC-A23H-01 19 57290742 57290742 C G ZIM2 Intron 0.25 TCGA-AC-A23H-01 19 57326917 57326917 G C PEG3 Missense_Mutation p.R965G 0.23 tolerated(0.07) benign(0.089) TCGA-AC-A23H-01 19 57327706 57327706 C T PEG3 Missense_Mutation p.E702K 0.22 tolerated(0.07) possibly_damaging(0.754) TCGA-AC-A23H-01 19 57646297 57646297 G A ZIM3 Missense_Mutation p.H470Y 0.25 deleterious(0) probably_damaging(0.924) TCGA-AC-A23H-01 19 57646979 57646979 C G ZIM3 Missense_Mutation p.Q242H 0.19 deleterious(0.04) benign(0.182) TCGA-AC-A23H-01 19 57839857 57839857 G C ZNF543 Missense_Mutation p.E343Q 0.27 deleterious(0.04) probably_damaging(0.992) TCGA-AC-A23H-01 19 57910564 57910564 C T ZNF548 Silent p.H315H 0.17 TCGA-AC-A23H-01 19 57931722 57931722 C G ZNF17 Missense_Mutation p.H288D 0.24 tolerated(0.67) benign(0.001) TCGA-AC-A23H-01 19 57967285 57967285 C T VN1R1 Silent p.V190V 0.43 TCGA-AC-A23H-01 19 58084933 58084933 C A ZNF416 Silent p.L113L 0.23 TCGA-AC-A23H-01 19 58102389 58102389 G C ZIK1 Missense_Mutation p.E404Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 19 58117499 58117499 G T ZNF530 Missense_Mutation p.L202F 0.27 tolerated(0.71) benign(0.001) TCGA-AC-A23H-01 19 58117788 58117788 G A ZNF530 Missense_Mutation p.E299K 0.38 deleterious(0.03) benign(0.337) TCGA-AC-A23H-01 19 58199645 58199645 G C ZNF551 Missense_Mutation p.E668Q 0.18 deleterious(0.02) benign(0.124) TCGA-AC-A23H-01 19 58371049 58371049 C T ZNF587 Silent p.L423L 0.43 TCGA-AC-A23H-01 19 58490439 58490439 C G ZNF606 Missense_Mutation p.E537Q 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-AC-A23H-01 19 58578511 58578511 G T ZNF135 Missense_Mutation p.G244V 0.14 deleterious(0) benign(0.293) TCGA-AC-A23H-01 19 58579109 58579109 C T ZNF135 Silent p.F443F 0.21 TCGA-AC-A23H-01 19 58772873 58772873 G A ZNF544 Missense_Mutation p.D301N 0.28 tolerated(0.27) possibly_damaging(0.665) TCGA-AC-A23H-01 19 58806254 58806254 G C ZNF8 Missense_Mutation p.K360N 0.34 deleterious(0.02) probably_damaging(0.957) TCGA-AC-A23H-01 19 58850027 58850027 C T ZSCAN22 Missense_Mutation p.R271C 0.16 deleterious(0.02) benign(0.058) TCGA-AC-A23H-01 19 58944775 58944775 C G ZNF132 Missense_Mutation p.R679T 0.53 deleterious(0.03) benign(0.122) TCGA-AC-A23H-01 19 58946561 58946561 C G ZNF132 Missense_Mutation p.E84Q 0.33 deleterious(0.03) probably_damaging(0.991) TCGA-AC-A23H-01 19 59010588 59010588 C G SLC27A5 Splice_Site p.X556_splice 0.38 TCGA-AC-A23H-01 19 59028713 59028713 G A ZBTB45 Missense_Mutation p.R110C 0.36 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 19 5914691 5914691 G A CAPS Silent p.R67R 0.46 TCGA-AC-A23H-01 19 6004218 6004218 C G RFX2 Missense_Mutation p.Q498H 0.24 deleterious(0.04) benign(0.009) TCGA-AC-A23H-01 19 603700 603700 C T HCN2 Silent p.F263F 0.25 TCGA-AC-A23H-01 19 618747 618747 C A POLRMT Missense_Mutation p.G1094V 0.20 deleterious(0.01) possibly_damaging(0.824) TCGA-AC-A23H-01 19 6374827 6374827 C A ALKBH7 Nonsense_Mutation p.S170* 0.27 TCGA-AC-A23H-01 19 6586069 6586069 C T CD70 Missense_Mutation p.D182N 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-AC-A23H-01 19 6686142 6686142 G C C3 Missense_Mutation p.S1268C 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 19 6711101 6711101 G A C3 Missense_Mutation p.S459L 0.21 tolerated(0.09) benign(0.414) TCGA-AC-A23H-01 19 6754078 6754078 G C SH2D3A Missense_Mutation p.L457V 0.29 deleterious(0.01) probably_damaging(0.921) TCGA-AC-A23H-01 19 6974536 6974536 G C EMR4P RNA 0.41 TCGA-AC-A23H-01 19 7083143 7083143 G C ZNF557 Missense_Mutation p.K227N 0.25 deleterious(0.01) possibly_damaging(0.895) TCGA-AC-A23H-01 19 7120638 7120638 C G INSR Missense_Mutation p.D1218H 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 19 7120734 7120734 C G INSR Missense_Mutation p.E1186Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 19 7625554 7625554 G A PNPLA6 Silent p.G1250G 0.29 TCGA-AC-A23H-01 19 7806792 7806792 G C CD209 3'UTR 0.25 TCGA-AC-A23H-01 19 7913975 7913975 G A EVI5L Missense_Mutation p.E166K 0.30 deleterious(0.05) possibly_damaging(0.814) TCGA-AC-A23H-01 19 803568 803568 C T PTBP1 Missense_Mutation p.S16F 0.24 deleterious(0) benign(0.019) TCGA-AC-A23H-01 19 8046016 8046016 C G ELAVL1 Missense_Mutation p.R76T 0.30 deleterious(0) possibly_damaging(0.524) TCGA-AC-A23H-01 19 810754 810754 C A PTBP1 Silent p.L534L 0.36 TCGA-AC-A23H-01 19 814652 814652 G C LPPR3 Missense_Mutation p.L233V 0.16 tolerated_low_confidence(0.19) unknown(0) TCGA-AC-A23H-01 19 8550499 8550499 G A HNRNPM Missense_Mutation p.G396E 0.36 deleterious(0.02) benign(0.265) TCGA-AC-A23H-01 19 8578212 8578212 G C ZNF414 Nonsense_Mutation p.S6* 0.44 TCGA-AC-A23H-01 19 8601830 8601830 C T MYO1F Intron 0.19 TCGA-AC-A23H-01 19 8615498 8615498 C T MYO1F Silent p.G284G 0.15 TCGA-AC-A23H-01 19 8660696 8660696 C T ADAMTS10 Missense_Mutation p.E477K 0.17 deleterious(0) benign(0.252) TCGA-AC-A23H-01 19 9002175 9002175 C G MUC16 Missense_Mutation p.Q13443H 0.19 probably_damaging(0.984) TCGA-AC-A23H-01 19 9046459 9046459 C G MUC16 Missense_Mutation p.R11724S 0.30 benign(0.007) TCGA-AC-A23H-01 19 9049754 9049754 G C MUC16 Missense_Mutation p.S10626C 0.24 benign(0.063) TCGA-AC-A23H-01 19 9062050 9062050 G A MUC16 Nonsense_Mutation p.Q8466* 0.26 TCGA-AC-A23H-01 19 9066056 9066056 G A MUC16 Silent p.L7130L 0.23 TCGA-AC-A23H-01 19 9087697 9087697 G A MUC16 Missense_Mutation p.S1373L 0.28 unknown(0) TCGA-AC-A23H-01 19 9270894 9270894 G A ZNF317 Silent p.K191K 0.27 TCGA-AC-A23H-01 19 929830 929830 C T ARID3A Missense_Mutation p.S101L 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-AC-A23H-01 19 9488986 9488986 G A ZNF177 5'UTR 0.30 TCGA-AC-A23H-01 19 9523890 9523890 C T ZNF266 3'UTR 0.28 TCGA-AC-A23H-01 19 964348 964348 C G ARID3A Missense_Mutation p.I289M 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 19 9971362 9971362 G C OLFM2 Missense_Mutation p.R58G 0.28 tolerated(0.08) possibly_damaging(0.551) TCGA-AC-A23H-01 1 10163031 10163031 C G UBE4B Missense_Mutation p.S154C 0.60 deleterious(0) unknown(0) TCGA-AC-A23H-01 1 103380321 103380321 C G COL11A1 Missense_Mutation p.G1288A 0.37 unknown(0) TCGA-AC-A23H-01 1 103461552 103461552 C G COL11A1 Missense_Mutation p.G763A 0.30 unknown(0) TCGA-AC-A23H-01 1 104163236 104163236 G T AMY2A Nonsense_Mutation p.E270* 0.16 TCGA-AC-A23H-01 1 10425640 10425640 G C KIF1B Missense_Mutation p.E1516D 0.22 tolerated(0.32) benign(0.005) TCGA-AC-A23H-01 1 10468137 10468137 C G PGD Missense_Mutation p.I153M 0.15 deleterious(0.01) probably_damaging(0.941) TCGA-AC-A23H-01 1 10523142 10523142 C A DFFA Missense_Mutation p.E252D 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-AC-A23H-01 1 10527263 10527263 G A DFFA Missense_Mutation p.S142L 0.26 deleterious(0.03) possibly_damaging(0.651) TCGA-AC-A23H-01 1 10714483 10714483 G - CASZ1 Frame_Shift_Del p.H611Tfs*75 0.47 TCGA-AC-A23H-01 1 109294878 109294878 G A STXBP3 Splice_Site p.X17_splice 0.25 TCGA-AC-A23H-01 1 109359767 109359767 G C AKNAD1 Nonsense_Mutation p.S761* 0.19 TCGA-AC-A23H-01 1 109365776 109365776 C T AKNAD1 Intron 0.27 TCGA-AC-A23H-01 1 109380248 109380248 G C AKNAD1 Nonsense_Mutation p.S487* 0.23 TCGA-AC-A23H-01 1 109394986 109394986 C A AKNAD1 Nonsense_Mutation p.E101* 0.28 TCGA-AC-A23H-01 1 109446798 109446798 C G GPSM2 Missense_Mutation p.Q372E 0.27 tolerated(0.15) benign(0.002) TCGA-AC-A23H-01 1 109795708 109795708 C G CELSR2 Missense_Mutation p.L1003V 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-AC-A23H-01 1 109803737 109803737 C G CELSR2 Silent p.V1344V 0.29 TCGA-AC-A23H-01 1 109804503 109804503 G A CELSR2 Silent p.L1457L 0.45 TCGA-AC-A23H-01 1 109804950 109804950 G C CELSR2 Missense_Mutation p.E1476D 0.53 tolerated(0.69) benign(0.009) TCGA-AC-A23H-01 1 109849538 109849538 C T MYBPHL Missense_Mutation p.E26K 0.24 tolerated(0.62) benign(0.001) TCGA-AC-A23H-01 1 109957929 109957929 C T PSMA5 Silent p.E51E 0.47 TCGA-AC-A23H-01 1 11008388 11008388 C G C1orf127 Missense_Mutation p.E602Q 0.19 deleterious(0.03) benign(0.347) TCGA-AC-A23H-01 1 110255893 110255893 C G GSTM5 Intron 0.27 TCGA-AC-A23H-01 1 110765684 110765684 G T KCNC4 Missense_Mutation p.E259D 0.24 tolerated(0.11) benign(0.023) TCGA-AC-A23H-01 1 110884645 110884645 C G RBM15 Missense_Mutation p.S873C 0.27 deleterious(0.03) benign(0.063) TCGA-AC-A23H-01 1 111146715 111146715 G A KCNA2 Silent p.I230I 0.28 TCGA-AC-A23H-01 1 11114822 11114822 G A SRM 3'UTR 0.27 TCGA-AC-A23H-01 1 111215866 111215866 C T KCNA3 Silent p.S522S 0.18 TCGA-AC-A23H-01 1 111437020 111437020 G C CD53 Missense_Mutation p.Q108H 0.29 deleterious(0) benign(0.039) TCGA-AC-A23H-01 1 11177099 11177099 G A MTOR Silent p.V2326V 0.26 TCGA-AC-A23H-01 1 111990064 111990064 C G WDR77 Missense_Mutation p.D146H 0.48 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 1 111990098 111990098 C T WDR77 Silent p.L134L 0.49 TCGA-AC-A23H-01 1 112323333 112323333 G C KCND3 Silent p.L450L 0.29 TCGA-AC-A23H-01 1 11288917 11288917 G A MTOR Silent p.F946F 0.21 TCGA-AC-A23H-01 1 113010050 113010050 G C WNT2B 5'UTR 0.30 TCGA-AC-A23H-01 1 113236789 113236789 C G MOV10 Silent p.S430S 0.17 TCGA-AC-A23H-01 1 113460021 113460021 G A SLC16A1 Missense_Mutation p.S336F 0.24 deleterious(0) possibly_damaging(0.908) TCGA-AC-A23H-01 1 113460626 113460626 C A SLC16A1 Missense_Mutation p.M134I 0.40 tolerated(0.56) benign(0.013) TCGA-AC-A23H-01 1 113655244 113655244 G A LRIG2 Missense_Mutation p.E648K 0.28 deleterious(0.03) possibly_damaging(0.807) TCGA-AC-A23H-01 1 113657369 113657369 G C LRIG2 Missense_Mutation p.D801H 0.24 deleterious(0) probably_damaging(0.928) TCGA-AC-A23H-01 1 114224865 114224865 G A MAGI3 Intron 0.29 TCGA-AC-A23H-01 1 114362127 114362127 G T PTPN22 Intron 0.10 TCGA-AC-A23H-01 1 114402066 114402066 G T PTPN22 Missense_Mutation p.S35Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 1 114447279 114447279 G A AP4B1 Missense_Mutation p.H21Y 0.19 deleterious(0.03) benign(0.003) TCGA-AC-A23H-01 1 114515946 114515946 C G HIPK1 Missense_Mutation p.P1149A 0.22 tolerated(0.1) benign(0.348) TCGA-AC-A23H-01 1 114640428 114640428 C A SYT6 Missense_Mutation p.W394L 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 114640500 114640500 C G SYT6 Splice_Site p.X370_splice 0.27 TCGA-AC-A23H-01 1 115220585 115220585 G C AMPD1 Silent p.L423L 0.18 TCGA-AC-A23H-01 1 115419390 115419390 G A SYCP1 Missense_Mutation p.E254K 0.24 tolerated(0.22) possibly_damaging(0.771) TCGA-AC-A23H-01 1 115428913 115428913 G A SYCP1 Silent p.L391L 0.17 TCGA-AC-A23H-01 1 115576828 115576828 C T TSHB Silent p.L133L 0.22 TCGA-AC-A23H-01 1 11596414 11596414 G C PTCHD2 Missense_Mutation p.E1284Q 0.19 tolerated(0.19) possibly_damaging(0.558) TCGA-AC-A23H-01 1 116929934 116929934 G C ATP1A1 Missense_Mutation p.E70Q 0.19 tolerated(0.09) benign(0.027) TCGA-AC-A23H-01 1 117122183 117122183 G A IGSF3 Silent p.F1075F 0.14 TCGA-AC-A23H-01 1 117556285 117556285 C G CD101 Missense_Mutation p.L367V 0.33 tolerated(1) benign(0.006) TCGA-AC-A23H-01 1 117910925 117910925 C G MAN1A2 Silent p.L40L 0.24 TCGA-AC-A23H-01 1 118035768 118035768 G T MAN1A2 Splice_Site p.X390_splice 0.13 TCGA-AC-A23H-01 1 11860346 11860346 C T MTHFR Missense_Mutation p.G170E 0.17 tolerated(0.26) benign(0.008) TCGA-AC-A23H-01 1 120438401 120438401 C G ADAM30 Missense_Mutation p.E187Q 0.21 tolerated(0.16) benign(0.052) TCGA-AC-A23H-01 1 120458354 120458354 C A NOTCH2 Missense_Mutation p.A2331S 0.36 tolerated(0.78) benign(0.114) TCGA-AC-A23H-01 1 12082262 12082262 C - MIIP Frame_Shift_Del p.P76Hfs*47 0.33 TCGA-AC-A23H-01 1 12414078 12414078 C G VPS13D Nonsense_Mutation p.S3160* 0.24 TCGA-AC-A23H-01 1 12416568 12416568 G C VPS13D Missense_Mutation p.E3329Q 0.12 probably_damaging(0.969) TCGA-AC-A23H-01 1 1267309 1267309 C T TAS1R3 Silent p.L161L 0.43 TCGA-AC-A23H-01 1 12856020 12856020 C T PRAMEF1 Missense_Mutation p.R434W 0.11 deleterious(0.03) benign(0.005) TCGA-AC-A23H-01 1 12939863 12939863 C G PRAMEF4 Missense_Mutation p.L313F 0.20 deleterious(0) probably_damaging(0.961) TCGA-AC-A23H-01 1 1325714 1325714 C - CCNL2 Frame_Shift_Del p.R301Kfs*52 0.19 TCGA-AC-A23H-01 1 1337464 1337464 C G MRPL20 Nonstop_Mutation p.*150Sext*6 0.23 TCGA-AC-A23H-01 1 13448422 13448422 G C PRAMEF13 Silent p.L351L 0.11 TCGA-AC-A23H-01 1 14105857 14105857 G C PRDM2 Missense_Mutation p.E523Q 0.31 probably_damaging(0.98) TCGA-AC-A23H-01 1 14108961 14108961 C G PRDM2 Silent p.V1557V 0.23 TCGA-AC-A23H-01 1 143767710 143767710 G A PPIAL4G Missense_Mutation p.R47C 0.12 deleterious_low_confidence(0.02) benign(0) TCGA-AC-A23H-01 1 144873981 144873981 G T PDE4DIP Nonsense_Mutation p.S1659* 0.24 TCGA-AC-A23H-01 1 144874746 144874746 G C PDE4DIP Missense_Mutation p.S1621C 0.24 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 144877067 144877067 C G PDE4DIP Silent p.L1540L 0.13 TCGA-AC-A23H-01 1 144922617 144922617 C T PDE4DIP Missense_Mutation p.E264K 0.12 deleterious(0) possibly_damaging(0.836) TCGA-AC-A23H-01 1 144955253 144955253 C G PDE4DIP Missense_Mutation p.E61Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 1 145438808 145438808 G T TXNIP Silent p.V2V 0.22 TCGA-AC-A23H-01 1 145518073 145518073 C G PEX11B Missense_Mutation p.L59V 0.15 deleterious(0.01) benign(0.433) TCGA-AC-A23H-01 1 145523009 145523009 C G PEX11B 3'UTR 0.16 TCGA-AC-A23H-01 1 145537186 145537186 C G ITGA10 Nonsense_Mutation p.S786* 0.21 TCGA-AC-A23H-01 1 145580464 145580464 G C PIAS3 Intron 0.21 TCGA-AC-A23H-01 1 146696735 146696735 G C FMO5 Intron 0.28 TCGA-AC-A23H-01 1 146758048 146758048 G C CHD1L Missense_Mutation p.E698Q 0.19 tolerated(0.1) possibly_damaging(0.501) TCGA-AC-A23H-01 1 147084768 147084768 C G BCL9 Missense_Mutation p.S47C 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-AC-A23H-01 1 147380472 147380472 G A GJA8 Silent p.K130K 0.13 TCGA-AC-A23H-01 1 148343737 148343737 C G NBPF20 Missense_Mutation p.R117T 0.20 benign(0.234) TCGA-AC-A23H-01 1 149783249 149783249 C T HIST2H2BF Intron 0.26 TCGA-AC-A23H-01 1 149783669 149783669 G C HIST2H2BF Missense_Mutation p.I70M 0.20 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-AC-A23H-01 1 149857778 149857778 C T HIST2H2BE 3'UTR 0.28 TCGA-AC-A23H-01 1 149858143 149858143 C T HIST2H2BE Silent p.K16K 0.13 TCGA-AC-A23H-01 1 149858749 149858749 G C HIST2H2AC Missense_Mutation p.K75N 0.28 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-AC-A23H-01 1 149858765 149858765 C A HIST2H2AC Missense_Mutation p.P81T 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-AC-A23H-01 1 149858952 149858952 G A HIST2H2AC 3'UTR 0.21 TCGA-AC-A23H-01 1 149859051 149859051 G A HIST2H2AB 3'UTR 0.38 TCGA-AC-A23H-01 1 149899732 149899732 G A SF3B4 5'UTR 0.23 TCGA-AC-A23H-01 1 149939379 149939379 G C OTUD7B Silent p.V114V 0.35 TCGA-AC-A23H-01 1 150039996 150039996 G A VPS45 Missense_Mutation p.D28N 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 150064414 150064414 G C VPS45 Missense_Mutation p.E428Q 0.41 tolerated(0.26) benign(0.141) TCGA-AC-A23H-01 1 150316909 150316909 G C PRPF3 Splice_Site p.X509_splice 0.17 TCGA-AC-A23H-01 1 150528805 150528805 C T ADAMTSL4 Silent p.L513L 0.47 TCGA-AC-A23H-01 1 150935477 150935477 G C SETDB1 Missense_Mutation p.E1107Q 0.24 tolerated_low_confidence(0.22) possibly_damaging(0.583) TCGA-AC-A23H-01 1 150940651 150940651 C G CERS2 Missense_Mutation p.Q106H 0.11 deleterious(0.05) benign(0.377) TCGA-AC-A23H-01 1 150972941 150972941 C T FAM63A Missense_Mutation p.D291N 0.34 deleterious(0) probably_damaging(0.975) TCGA-AC-A23H-01 1 151006771 151006771 G A PRUNE 3'UTR 0.28 TCGA-AC-A23H-01 1 151107641 151107641 C G SEMA6C Missense_Mutation p.Q526H 0.21 tolerated(0.12) benign(0.387) TCGA-AC-A23H-01 1 151171555 151171555 C T PIP5K1A Missense_Mutation p.S28L 0.18 deleterious_low_confidence(0.01) benign(0.008) TCGA-AC-A23H-01 1 151274390 151274390 G C PI4KB Nonsense_Mutation p.S572* 0.15 TCGA-AC-A23H-01 1 151509326 151509326 G C CGN Missense_Mutation p.E1143Q 0.18 deleterious(0) possibly_damaging(0.781) TCGA-AC-A23H-01 1 151678416 151678416 G C CELF3 Missense_Mutation p.I384M 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 152058780 152058780 C T TCHHL1 Missense_Mutation p.E460K 0.35 tolerated(0.21) possibly_damaging(0.493) TCGA-AC-A23H-01 1 152083905 152083905 C G TCHH Missense_Mutation p.E596D 0.16 unknown(0) TCGA-AC-A23H-01 1 152085347 152085347 C G TCHH Missense_Mutation p.E116Q 0.11 unknown(0) TCGA-AC-A23H-01 1 152085401 152085401 C A TCHH Nonsense_Mutation p.E98* 0.18 TCGA-AC-A23H-01 1 152129019 152129019 C G RPTN Missense_Mutation p.E186Q 0.15 deleterious(0.04) probably_damaging(0.917) TCGA-AC-A23H-01 1 152277037 152277037 C T FLG Missense_Mutation p.R3442K 0.19 unknown(0) TCGA-AC-A23H-01 1 152283475 152283475 C T FLG Missense_Mutation p.G1296E 0.39 probably_damaging(0.931) TCGA-AC-A23H-01 1 152283641 152283641 C T FLG Missense_Mutation p.A1241T 0.38 possibly_damaging(0.787) TCGA-AC-A23H-01 1 152287134 152287134 C G FLG Silent p.L76L 0.22 TCGA-AC-A23H-01 1 152323345 152323345 C G FLG2 Missense_Mutation p.R2306T 0.21 benign(0.002) TCGA-AC-A23H-01 1 152586468 152586468 G A LCE3B Missense_Mutation p.C61Y 0.35 tolerated_low_confidence(1) unknown(0) TCGA-AC-A23H-01 1 152648635 152648635 T A LCE2C Nonsense_Mutation p.C48* 0.23 TCGA-AC-A23H-01 1 152784994 152784994 C T LCE1B Silent p.C24C 0.22 TCGA-AC-A23H-01 1 152857321 152857321 G A SMCP 3'UTR 0.48 TCGA-AC-A23H-01 1 153043014 153043014 G C SPRR2B 3'UTR 0.21 TCGA-AC-A23H-01 1 153318658 153318658 G T PGLYRP4 Missense_Mutation p.S20Y 0.44 deleterious_low_confidence(0.01) benign(0.222) TCGA-AC-A23H-01 1 153431490 153431490 C G S100A7 5'UTR 0.17 TCGA-AC-A23H-01 1 153610786 153610786 G A CHTOP Silent p.L27L 0.35 TCGA-AC-A23H-01 1 153906649 153906649 C T DENND4B Missense_Mutation p.R968Q 0.36 tolerated(0.08) benign(0) TCGA-AC-A23H-01 1 153955277 153955277 G A RAB13 Missense_Mutation p.S111L 0.16 deleterious(0.01) benign(0.038) TCGA-AC-A23H-01 1 154164459 154164459 C T TPM3 Silent p.L12L 0.17 TCGA-AC-A23H-01 1 154226531 154226531 C G UBAP2L Missense_Mutation p.S607C 0.22 deleterious(0) benign(0.184) TCGA-AC-A23H-01 1 154227755 154227755 G C UBAP2L Missense_Mutation p.L679F 0.16 deleterious(0.02) unknown(0) TCGA-AC-A23H-01 1 154295740 154295740 G A AQP10 Missense_Mutation p.G132R 0.16 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 154401671 154401671 G C IL6R Splice_Site p.X29_splice 0.19 TCGA-AC-A23H-01 1 154516584 154516584 G A TDRD10 Missense_Mutation p.E217K 0.23 tolerated(0.09) probably_damaging(0.946) TCGA-AC-A23H-01 1 154560727 154560727 G T ADAR Missense_Mutation p.P965T 0.14 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 1 154561914 154561914 G C ADAR Missense_Mutation p.S898C 0.17 deleterious(0) probably_damaging(0.932) TCGA-AC-A23H-01 1 154842117 154842117 G A KCNN3 Silent p.F108F 0.15 TCGA-AC-A23H-01 1 154909180 154909180 G A PMVK 5'UTR 0.31 TCGA-AC-A23H-01 1 154919136 154919136 G C PBXIP1 Silent p.L338L 0.12 TCGA-AC-A23H-01 1 154942698 154942698 G C SHC1 Nonsense_Mutation p.S102* 0.34 TCGA-AC-A23H-01 1 154987160 154987160 G C ZBTB7B Silent p.L42L 0.47 TCGA-AC-A23H-01 1 155018651 155018651 C T DCST1 Silent p.I441I 0.19 TCGA-AC-A23H-01 1 155041530 155041530 G C EFNA4 Missense_Mutation p.G169R 0.19 tolerated(0.17) benign(0.012) TCGA-AC-A23H-01 1 155058903 155058903 G C EFNA3 Missense_Mutation p.E201Q 0.21 tolerated(0.18) benign(0.327) TCGA-AC-A23H-01 1 155144864 155144864 C T RP11-201K10.3 Intron 0.22 TCGA-AC-A23H-01 1 155152321 155152321 C T TRIM46 Missense_Mutation p.S500F 0.25 deleterious(0) probably_damaging(0.949) TCGA-AC-A23H-01 1 155174872 155174872 C G THBS3 Missense_Mutation p.Q174H 0.14 tolerated(0.09) benign(0.013) TCGA-AC-A23H-01 1 155176168 155176168 G C THBS3 Missense_Mutation p.R37G 0.45 deleterious(0.01) possibly_damaging(0.483) TCGA-AC-A23H-01 1 155265252 155265252 C G PKLR Missense_Mutation p.E161D 0.55 deleterious(0.02) probably_damaging(0.964) TCGA-AC-A23H-01 1 155289471 155289471 C T FDPS Nonsense_Mutation p.Q306* 0.20 TCGA-AC-A23H-01 1 155289696 155289696 C G FDPS Missense_Mutation p.P346A 0.18 tolerated(0.09) benign(0.012) TCGA-AC-A23H-01 1 155290322 155290322 C G FDPS Silent p.L394L 0.15 TCGA-AC-A23H-01 1 155449081 155449081 C T ASH1L Missense_Mutation p.D1194N 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AC-A23H-01 1 155531932 155531932 C A ASH1L Intron 0.24 TCGA-AC-A23H-01 1 155582000 155582000 G A MSTO1 Missense_Mutation p.D236N 0.10 tolerated(0.52) benign(0.05) TCGA-AC-A23H-01 1 155747607 155747607 C G GON4L Missense_Mutation p.E633Q 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-AC-A23H-01 1 15578350 15578350 G A FHAD1 Missense_Mutation p.E24K 0.28 tolerated(0.14) benign(0.034) TCGA-AC-A23H-01 1 155850389 155850389 G A SYT11 Silent p.K320K 0.16 TCGA-AC-A23H-01 1 155874117 155874117 G C RIT1 Silent p.L155L 0.26 TCGA-AC-A23H-01 1 1560701 1560701 G A MIB2 Missense_Mutation p.D368N 0.29 tolerated(0.37) possibly_damaging(0.791) TCGA-AC-A23H-01 1 156213494 156213494 C G PAQR6 3'UTR 0.23 TCGA-AC-A23H-01 1 156247778 156247778 C G SMG5 Missense_Mutation p.E79Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 1 156255195 156255195 G C TMEM79 Missense_Mutation p.E60Q 0.17 tolerated(0.08) benign(0.023) TCGA-AC-A23H-01 1 156437897 156437897 C G MEF2D Missense_Mutation p.G481A 0.19 tolerated(0.14) benign(0.156) TCGA-AC-A23H-01 1 156565277 156565277 C G GPATCH4 Missense_Mutation p.E286Q 0.19 tolerated(0.07) benign(0.173) TCGA-AC-A23H-01 1 156617872 156617872 G C BCAN Missense_Mutation p.D247H 0.42 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 156693116 156693116 C T ISG20L2 3'UTR 0.28 TCGA-AC-A23H-01 1 156784028 156784028 C T SH2D2A Missense_Mutation p.E133K 0.33 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 1 156843686 156843686 C T NTRK1 Missense_Mutation p.S371F 0.30 deleterious(0.02) benign(0.352) TCGA-AC-A23H-01 1 156873731 156873731 C T PEAR1 Silent p.L5L 0.41 TCGA-AC-A23H-01 1 156900405 156900405 C G LRRC71 Missense_Mutation p.S442C 0.33 deleterious(0.02) possibly_damaging(0.717) TCGA-AC-A23H-01 1 156902425 156902425 C T LRRC71 Intron 0.47 TCGA-AC-A23H-01 1 156909698 156909698 C G ARHGEF11 Missense_Mutation p.E1246D 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.88) TCGA-AC-A23H-01 1 157494120 157494120 C A FCRL5 Missense_Mutation p.D730Y 0.20 deleterious(0) probably_damaging(0.981) TCGA-AC-A23H-01 1 157504629 157504629 C T FCRL5 Missense_Mutation p.E486K 0.16 tolerated(0.15) probably_damaging(0.992) TCGA-AC-A23H-01 1 157556084 157556084 G A FCRL4 Nonsense_Mutation p.Q337* 0.12 TCGA-AC-A23H-01 1 157557155 157557155 C T FCRL4 Missense_Mutation p.R253K 0.18 tolerated(0.66) benign(0.007) TCGA-AC-A23H-01 1 157666098 157666098 C T FCRL3 Silent p.V288V 0.30 TCGA-AC-A23H-01 1 157667240 157667240 C G FCRL3 Intron 0.19 TCGA-AC-A23H-01 1 157670317 157670317 C T FCRL3 5'UTR 0.24 TCGA-AC-A23H-01 1 157737211 157737211 C G FCRL2 Silent p.L324L 0.15 TCGA-AC-A23H-01 1 157737549 157737549 C T FCRL2 Intron 0.30 TCGA-AC-A23H-01 1 157801638 157801638 G A CD5L 3'UTR 0.36 TCGA-AC-A23H-01 1 157804221 157804221 C T CD5L Missense_Mutation p.E232K 0.17 deleterious(0.04) possibly_damaging(0.744) TCGA-AC-A23H-01 1 15783251 15783251 G C CELA2A Translation_Start_Site p.M1? 0.24 deleterious(0.01) benign(0.315) TCGA-AC-A23H-01 1 15817659 15817659 G C CASP9 3'Flank 0.18 TCGA-AC-A23H-01 1 15819687 15819687 C G CASP9 Intron 0.23 TCGA-AC-A23H-01 1 158225878 158225878 G A CD1A Missense_Mutation p.G137E 0.18 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 1 158435937 158435937 C T OR10K1 Nonsense_Mutation p.Q196* 0.19 TCGA-AC-A23H-01 1 158590212 158590212 C T SPTA1 Silent p.L2055L 0.11 TCGA-AC-A23H-01 1 158595954 158595954 G C SPTA1 Silent p.L1964L 0.15 TCGA-AC-A23H-01 1 158607965 158607965 G C SPTA1 Missense_Mutation p.Q1683E 0.14 tolerated(0.5) benign(0.009) TCGA-AC-A23H-01 1 158632585 158632585 C G SPTA1 Missense_Mutation p.D791H 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 158812191 158812191 G C MNDA Missense_Mutation p.R83P 0.13 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 1 158908888 158908888 G A PYHIN1 Missense_Mutation p.E144K 0.24 tolerated(1) benign(0.005) TCGA-AC-A23H-01 1 159505238 159505238 G A OR10J5 Missense_Mutation p.S187F 0.19 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 1 159683805 159683805 G C CRP Missense_Mutation p.S62C 0.25 deleterious(0.01) possibly_damaging(0.894) TCGA-AC-A23H-01 1 15987464 15987464 T C RSC1A1 Silent p.S367S 0.26 TCGA-AC-A23H-01 1 159900090 159900090 C A IGSF9 Missense_Mutation p.K651N 0.12 tolerated(0.61) benign(0.148) TCGA-AC-A23H-01 1 159913197 159913197 C T IGSF9 Silent p.Q16Q 0.11 TCGA-AC-A23H-01 1 160121706 160121706 C T ATP1A4 5'UTR 0.29 TCGA-AC-A23H-01 1 160134050 160134050 G A ATP1A4 Missense_Mutation p.E295K 0.18 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 160213762 160213762 C G DCAF8 Missense_Mutation p.D13H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.826) TCGA-AC-A23H-01 1 160325512 160325512 G C NCSTN Missense_Mutation p.E474Q 0.25 deleterious(0.03) possibly_damaging(0.507) TCGA-AC-A23H-01 1 160328001 160328001 C G NCSTN Missense_Mutation p.I690M 0.38 tolerated(0.06) possibly_damaging(0.534) TCGA-AC-A23H-01 1 160607157 160607157 G A SLAMF1 Missense_Mutation p.S80F 0.13 tolerated(0.07) probably_damaging(1) TCGA-AC-A23H-01 1 160811287 160811287 G C CD244 Missense_Mutation p.S128C 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 1 160849181 160849181 G C ITLN1 Missense_Mutation p.Q237E 0.28 deleterious(0.02) possibly_damaging(0.539) TCGA-AC-A23H-01 1 161013070 161013070 C G USF1 5'UTR 0.21 TCGA-AC-A23H-01 1 161069459 161069459 G A KLHDC9 Silent p.Q253Q 0.26 TCGA-AC-A23H-01 1 161166022 161166022 C T ADAMTS4 Silent p.R343R 0.12 TCGA-AC-A23H-01 1 161476187 161476187 C G FCGR2A Missense_Mutation p.S57C 0.18 tolerated(0.1) probably_damaging(0.991) TCGA-AC-A23H-01 1 161789439 161789439 G A ATF6 Missense_Mutation p.R309K 0.13 tolerated(0.09) possibly_damaging(0.498) TCGA-AC-A23H-01 1 162302840 162302840 G A NOS1AP Silent p.L126L 0.28 TCGA-AC-A23H-01 1 16247410 16247410 G A SPEN Missense_Mutation p.E561K 0.20 probably_damaging(0.998) TCGA-AC-A23H-01 1 162535985 162535985 G A UAP1 Missense_Mutation p.E43K 0.15 tolerated(0.28) benign(0.101) TCGA-AC-A23H-01 1 16254734 16254734 G C SPEN Missense_Mutation p.D667H 0.32 possibly_damaging(0.8) TCGA-AC-A23H-01 1 16269183 16269183 C G ZBTB17 Missense_Mutation p.D627H 0.24 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 1 16271073 16271073 C T ZBTB17 Missense_Mutation p.E365K 0.22 tolerated(0.11) benign(0.174) TCGA-AC-A23H-01 1 163131767 163131767 C G RGS5 Splice_Site p.X52_splice 0.12 TCGA-AC-A23H-01 1 163309205 163309205 C T NUF2 Nonsense_Mutation p.Q182* 0.27 TCGA-AC-A23H-01 1 16349139 16349139 G A CLCNKA Missense_Mutation p.E9K 0.13 deleterious_low_confidence(0.01) benign(0.215) TCGA-AC-A23H-01 1 16356470 16356470 C T CLCNKA Silent p.I436I 0.25 TCGA-AC-A23H-01 1 16385199 16385199 G T FAM131C Silent p.I192I 0.18 TCGA-AC-A23H-01 1 16456789 16456789 G A EPHA2 Silent p.I867I 0.29 TCGA-AC-A23H-01 1 165324738 165324738 G C LMX1A Missense_Mutation p.S20C 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.572) TCGA-AC-A23H-01 1 165386387 165386387 G A RXRG Silent p.L171L 0.30 TCGA-AC-A23H-01 1 165728769 165728769 C G TMCO1 Missense_Mutation p.K118N 0.14 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 1 167815400 167815400 C G ADCY10 Missense_Mutation p.E847Q 0.15 tolerated(0.29) possibly_damaging(0.723) TCGA-AC-A23H-01 1 167905004 167905004 C T MPC2 Missense_Mutation p.E26K 0.17 tolerated(0.73) benign(0.003) TCGA-AC-A23H-01 1 168262409 168262409 G T TBX19 Nonsense_Mutation p.E166* 0.15 TCGA-AC-A23H-01 1 16907442 16907442 C G NBPF1 Missense_Mutation p.Q463H 0.03 deleterious(0.02) probably_damaging(0.994) TCGA-AC-A23H-01 1 16907952 16907952 C T NBPF1 Missense_Mutation p.E448K 0.06 tolerated(0.06) probably_damaging(0.992) TCGA-AC-A23H-01 1 16914263 16914263 G C NBPF1 Missense_Mutation p.Q175E 0.07 tolerated(0.58) benign(0.092) TCGA-AC-A23H-01 1 16918549 16918549 G A NBPF1 Intron 0.06 TCGA-AC-A23H-01 1 16945724 16945724 G C RP5-1182A14.5 3'Flank 0.15 TCGA-AC-A23H-01 1 169582887 169582887 C G SELP Missense_Mutation p.E176Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 169588399 169588399 G A SELP Missense_Mutation p.S21F 0.13 deleterious(0) benign(0.109) TCGA-AC-A23H-01 1 169660881 169660881 C T SELL 3'UTR 0.28 TCGA-AC-A23H-01 1 17046485 17046485 C A ESPNP RNA 0.13 TCGA-AC-A23H-01 1 17084015 17084015 C G MST1L Intron 0.12 TCGA-AC-A23H-01 1 171033290 171033290 G A MROH9 Missense_Mutation p.E799K 0.13 tolerated(0.42) benign(0.027) TCGA-AC-A23H-01 1 171076846 171076846 G T FMO3 Missense_Mutation p.D118Y 0.20 deleterious(0) benign(0.078) TCGA-AC-A23H-01 1 171083156 171083156 G A FMO3 Silent p.R279R 0.14 TCGA-AC-A23H-01 1 171086604 171086604 C G FMO3 3'UTR 0.31 TCGA-AC-A23H-01 1 171165874 171165874 G C FMO2 Missense_Mutation p.Q136H 0.13 deleterious(0.02) possibly_damaging(0.83) TCGA-AC-A23H-01 1 171254610 171254610 C G FMO1 Missense_Mutation p.S509C 0.17 tolerated(0.08) possibly_damaging(0.868) TCGA-AC-A23H-01 1 171501579 171501579 G A PRRC2C Missense_Mutation p.R449Q 0.30 unknown(0) TCGA-AC-A23H-01 1 171501701 171501701 G A PRRC2C Missense_Mutation p.E490K 0.38 unknown(0) TCGA-AC-A23H-01 1 171509807 171509807 C G PRRC2C Missense_Mutation p.Q1066E 0.15 unknown(0) TCGA-AC-A23H-01 1 171707524 171707524 C T VAMP4 Missense_Mutation p.D11N 0.16 tolerated(0.15) benign(0.069) TCGA-AC-A23H-01 1 172038040 172038040 G A DNM3 Missense_Mutation p.D473N 0.21 tolerated(0.08) benign(0.081) TCGA-AC-A23H-01 1 172520719 172520719 G C SUCO Missense_Mutation p.D44H 0.19 tolerated_low_confidence(0.05) benign(0.013) TCGA-AC-A23H-01 1 172558909 172558909 G A SUCO Missense_Mutation p.E890K 0.25 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 17285117 17285117 G A CROCC Missense_Mutation p.E1302K 0.38 probably_damaging(0.918) TCGA-AC-A23H-01 1 173472445 173472445 C T SLC9C2 Missense_Mutation p.E1111K 0.17 tolerated_low_confidence(0.58) benign(0) TCGA-AC-A23H-01 1 173772346 173772346 G C CENPL Missense_Mutation p.L286V 0.30 tolerated(0.83) benign(0.042) TCGA-AC-A23H-01 1 173822972 173822972 G A DARS2 Missense_Mutation p.E535K 0.06 deleterious(0.03) probably_damaging(1) TCGA-AC-A23H-01 1 173907734 173907734 C G RC3H1 3'UTR 0.17 TCGA-AC-A23H-01 1 173930982 173930982 C T RC3H1 Missense_Mutation p.E695K 0.14 deleterious(0.01) benign(0.069) TCGA-AC-A23H-01 1 174245061 174245061 G C RABGAP1L Missense_Mutation p.E382Q 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-AC-A23H-01 1 174987702 174987702 G A MRPS14 Missense_Mutation p.S19L 0.20 tolerated(0.37) benign(0) TCGA-AC-A23H-01 1 175046563 175046563 C G TNN Silent p.L3L 0.33 TCGA-AC-A23H-01 1 176132107 176132107 C G RFWD2 Missense_Mutation p.Q220H 0.27 tolerated(0.07) benign(0.013) TCGA-AC-A23H-01 1 176759065 176759065 C A PAPPA2 Missense_Mutation p.F1612L 0.33 tolerated(0.23) possibly_damaging(0.823) TCGA-AC-A23H-01 1 176759108 176759108 G A PAPPA2 Missense_Mutation p.E1627K 0.12 tolerated(0.5) benign(0.001) TCGA-AC-A23H-01 1 176926963 176926963 C G ASTN1 Missense_Mutation p.E580Q 0.21 deleterious(0) probably_damaging(0.948) TCGA-AC-A23H-01 1 17735452 17735452 C G RCC2 3'UTR 0.27 TCGA-AC-A23H-01 1 177930798 177930798 G A SEC16B Silent p.L238L 0.36 TCGA-AC-A23H-01 1 179320505 179320505 C A SOAT1 Missense_Mutation p.L502M 0.35 tolerated(0.46) benign(0.023) TCGA-AC-A23H-01 1 179587753 179587753 C T TDRD5 Missense_Mutation p.S284L 0.14 tolerated(0.12) possibly_damaging(0.752) TCGA-AC-A23H-01 1 180853188 180853188 G A XPR1 Missense_Mutation p.E693K 0.10 deleterious_low_confidence(0.02) benign(0.427) TCGA-AC-A23H-01 1 180913537 180913537 C T KIAA1614 Missense_Mutation p.H1058Y 0.15 tolerated(0.53) possibly_damaging(0.804) TCGA-AC-A23H-01 1 181019152 181019152 C G MR1 Missense_Mutation p.H112D 0.14 deleterious(0) possibly_damaging(0.876) TCGA-AC-A23H-01 1 181057913 181057913 C T IER5 5'UTR 0.62 TCGA-AC-A23H-01 1 181058944 181058944 C A IER5 Silent p.A302A 0.21 TCGA-AC-A23H-01 1 181701704 181701704 C T CACNA1E Missense_Mutation p.R828W 0.32 deleterious(0.01) possibly_damaging(0.689) TCGA-AC-A23H-01 1 181707500 181707500 C G CACNA1E Intron 0.17 TCGA-AC-A23H-01 1 181741292 181741292 G T CACNA1E Missense_Mutation p.Q1688H 0.27 tolerated(0.29) possibly_damaging(0.522) TCGA-AC-A23H-01 1 181767956 181767956 G C CACNA1E Missense_Mutation p.D2310H 0.30 deleterious(0) probably_damaging(0.969) TCGA-AC-A23H-01 1 182458129 182458129 C T RGSL1 Silent p.F503F 0.28 TCGA-AC-A23H-01 1 182554545 182554545 G A RNASEL Missense_Mutation p.S466L 0.11 tolerated(0.72) benign(0.004) TCGA-AC-A23H-01 1 182853767 182853767 C T DHX9 Missense_Mutation p.H1094Y 0.18 tolerated(1) benign(0.029) TCGA-AC-A23H-01 1 182920488 182920488 C G SHCBP1L Missense_Mutation p.E174Q 0.21 tolerated(0.08) probably_damaging(0.951) TCGA-AC-A23H-01 1 183510225 183510225 G T SMG7 Missense_Mutation p.D468Y 0.18 deleterious(0.01) probably_damaging(0.914) TCGA-AC-A23H-01 1 183515224 183515224 G C SMG7 Missense_Mutation p.E786Q 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A23H-01 1 183536371 183536371 C G NCF2 Missense_Mutation p.D275H 0.38 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 1 183604716 183604716 C T ARPC5 Missense_Mutation p.E27K 0.39 deleterious(0.05) benign(0.011) TCGA-AC-A23H-01 1 184764170 184764170 C T FAM129A Missense_Mutation p.D910N 0.19 deleterious_low_confidence(0.05) benign(0.039) TCGA-AC-A23H-01 1 184764716 184764716 G C FAM129A Missense_Mutation p.P728A 0.08 tolerated_low_confidence(0.86) benign(0.075) TCGA-AC-A23H-01 1 185067212 185067212 G A RNF2 Missense_Mutation p.R158Q 0.35 deleterious(0.01) benign(0.107) TCGA-AC-A23H-01 1 185931690 185931690 C A HMCN1 Missense_Mutation p.F623L 0.37 probably_damaging(0.977) TCGA-AC-A23H-01 1 185985095 185985095 C G HMCN1 Missense_Mutation p.P1639A 0.15 possibly_damaging(0.596) TCGA-AC-A23H-01 1 186072774 186072774 G A HMCN1 Missense_Mutation p.E3582K 0.30 benign(0.307) TCGA-AC-A23H-01 1 186304493 186304493 C T TPR Missense_Mutation p.E1630K 0.16 benign(0.292) TCGA-AC-A23H-01 1 186646840 186646840 G A PTGS2 Nonsense_Mutation p.Q194* 0.15 TCGA-AC-A23H-01 1 186908287 186908287 G A PLA2G4A Silent p.K281K 0.18 TCGA-AC-A23H-01 1 186946853 186946853 G C PLA2G4A Missense_Mutation p.E631D 0.14 tolerated(0.3) benign(0.006) TCGA-AC-A23H-01 1 190423875 190423875 G A BRINP3 Missense_Mutation p.S49F 0.25 deleterious(0) benign(0.017) TCGA-AC-A23H-01 1 19180959 19180959 G T TAS1R2 Missense_Mutation p.F335L 0.18 tolerated(0.15) possibly_damaging(0.534) TCGA-AC-A23H-01 1 19181025 19181025 G A TAS1R2 Silent p.L313L 0.16 TCGA-AC-A23H-01 1 192780774 192780774 G A RGS2 3'UTR 0.44 TCGA-AC-A23H-01 1 19470545 19470545 C G UBR4 Missense_Mutation p.R2703P 0.28 probably_damaging(0.998) TCGA-AC-A23H-01 1 19481938 19481938 C G UBR4 Silent p.L2099L 0.25 TCGA-AC-A23H-01 1 19483309 19483309 G A UBR4 Silent p.L1957L 0.13 TCGA-AC-A23H-01 1 196197466 196197466 C G KCNT2 Splice_Site p.X1099_splice 0.17 TCGA-AC-A23H-01 1 19683156 19683156 C T CAPZB Missense_Mutation p.M187I 0.20 tolerated(0.15) benign(0.42) TCGA-AC-A23H-01 1 196971746 196971746 G C CFHR5 Missense_Mutation p.E428Q 0.17 deleterious(0) probably_damaging(0.913) TCGA-AC-A23H-01 1 197063237 197063237 G C ASPM Missense_Mutation p.H3021D 0.15 tolerated(0.24) benign(0.122) TCGA-AC-A23H-01 1 197069590 197069590 C G ASPM Missense_Mutation p.E2931Q 0.18 tolerated(0.18) benign(0.001) TCGA-AC-A23H-01 1 197094316 197094316 G T ASPM Missense_Mutation p.T981N 0.17 deleterious(0) possibly_damaging(0.775) TCGA-AC-A23H-01 1 197098320 197098320 G C ASPM Missense_Mutation p.F919L 0.18 deleterious(0) probably_damaging(0.945) TCGA-AC-A23H-01 1 197128626 197128626 G A ZBTB41 Nonsense_Mutation p.Q865* 0.15 TCGA-AC-A23H-01 1 197876365 197876365 C G C1orf53 3'UTR 0.29 TCGA-AC-A23H-01 1 197898305 197898305 C A LHX9 Silent p.I370I 0.18 TCGA-AC-A23H-01 1 200522551 200522551 C T KIF14 Missense_Mutation p.E1638K 0.27 tolerated(0.65) benign(0.118) TCGA-AC-A23H-01 1 200817987 200817987 T G CAMSAP2 Missense_Mutation p.L697R 0.10 deleterious(0.01) benign(0.331) TCGA-AC-A23H-01 1 200818403 200818403 G A CAMSAP2 Missense_Mutation p.D836N 0.15 tolerated(0.46) benign(0.047) TCGA-AC-A23H-01 1 200818586 200818586 G C CAMSAP2 Missense_Mutation p.E897Q 0.28 tolerated(0.07) probably_damaging(0.997) TCGA-AC-A23H-01 1 200877971 200877971 G A C1orf106 Missense_Mutation p.E230K 0.35 deleterious(0.03) possibly_damaging(0.662) TCGA-AC-A23H-01 1 201046054 201046054 G A CACNA1S Silent p.V607V 0.25 TCGA-AC-A23H-01 1 201046145 201046145 C G CACNA1S Missense_Mutation p.G577A 0.18 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 201777848 201777848 G A NAV1 Silent p.L1352L 0.21 TCGA-AC-A23H-01 1 201932806 201932806 G A TIMM17A Missense_Mutation p.G85R 0.30 tolerated(0.36) possibly_damaging(0.844) TCGA-AC-A23H-01 1 202092631 202092631 C G GPR37L1 Silent p.L180L 0.17 TCGA-AC-A23H-01 1 202172978 202172978 C G LGR6 Intron 0.35 TCGA-AC-A23H-01 1 202702755 202702755 G A KDM5B Missense_Mutation p.P1228L 0.37 tolerated(0.05) probably_damaging(0.992) TCGA-AC-A23H-01 1 202702809 202702809 G A KDM5B Missense_Mutation p.S1210L 0.38 tolerated(0.48) benign(0.001) TCGA-AC-A23H-01 1 20305328 20305328 C G PLA2G2A 5'UTR 0.29 TCGA-AC-A23H-01 1 203652212 203652212 C T ATP2B4 5'UTR 0.43 TCGA-AC-A23H-01 1 203668783 203668783 G C ATP2B4 Missense_Mutation p.G196A 0.29 deleterious(0.04) benign(0.113) TCGA-AC-A23H-01 1 203669375 203669375 G A ATP2B4 Missense_Mutation p.D231N 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-AC-A23H-01 1 203671192 203671192 G A ATP2B4 Missense_Mutation p.E308K 0.30 tolerated(0.37) benign(0.234) TCGA-AC-A23H-01 1 203798919 203798919 G C ZC3H11A Missense_Mutation p.E172Q 0.32 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 1 203818934 203818934 G A ZC3H11A Silent p.R573R 0.42 TCGA-AC-A23H-01 1 203839161 203839161 C T SNRPE 3'UTR 0.49 TCGA-AC-A23H-01 1 204197331 204197331 C T PLEKHA6 Missense_Mutation p.E971K 0.38 tolerated(0.07) possibly_damaging(0.788) TCGA-AC-A23H-01 1 204218354 204218354 C T PLEKHA6 Silent p.V544V 0.19 TCGA-AC-A23H-01 1 204228864 204228864 C A PLEKHA6 Nonsense_Mutation p.E177* 0.20 TCGA-AC-A23H-01 1 204378679 204378679 C T PPP1R15B Missense_Mutation p.D621N 0.33 tolerated(0.1) benign(0.056) TCGA-AC-A23H-01 1 204433254 204433254 G C PIK3C2B Missense_Mutation p.S399C 0.37 tolerated(0.09) possibly_damaging(0.536) TCGA-AC-A23H-01 1 204438647 204438647 G A PIK3C2B Missense_Mutation p.S95L 0.20 deleterious_low_confidence(0) benign(0.023) TCGA-AC-A23H-01 1 20499354 20499354 C T PLA2G2C Silent p.L72L 0.19 TCGA-AC-A23H-01 1 205042924 205042924 G A CNTN2 3'UTR 0.35 TCGA-AC-A23H-01 1 205052636 205052636 G A TMEM81 3'UTR 0.15 TCGA-AC-A23H-01 1 20517545 20517545 G C UBXN10 Missense_Mutation p.R164T 0.25 tolerated(0.14) possibly_damaging(0.536) TCGA-AC-A23H-01 1 205884353 205884353 G A SLC26A9 Intron 0.31 TCGA-AC-A23H-01 1 206224413 206224413 C T AVPR1B 5'UTR 0.15 TCGA-AC-A23H-01 1 206574870 206574870 G A SRGAP2 Missense_Mutation p.E222K 0.11 tolerated(0.09) benign(0.193) TCGA-AC-A23H-01 1 206648276 206648276 G C IKBKE Missense_Mutation p.E99D 0.12 tolerated(0.05) probably_damaging(0.927) TCGA-AC-A23H-01 1 206756622 206756622 G A RASSF5 Missense_Mutation p.E201K 0.31 tolerated(0.29) benign(0.173) TCGA-AC-A23H-01 1 206820844 206820844 C T DYRK3 Nonsense_Mutation p.Q101* 0.45 TCGA-AC-A23H-01 1 207074898 207074898 C G IL24 Missense_Mutation p.F122L 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-AC-A23H-01 1 207087266 207087266 C G FAIM3 Missense_Mutation p.E71Q 0.13 deleterious(0.03) probably_damaging(0.91) TCGA-AC-A23H-01 1 207195828 207195828 C T C1orf116 Missense_Mutation p.M427I 0.23 tolerated(0.07) benign(0.001) TCGA-AC-A23H-01 1 207684913 207684913 G C CR1 Splice_Site p.X134_splice 0.19 TCGA-AC-A23H-01 1 207741168 207741168 G C CR1 Splice_Site p.X1318_splice 0.16 TCGA-AC-A23H-01 1 207967120 207967120 G C CD46 3'UTR 0.36 TCGA-AC-A23H-01 1 208062090 208062090 G C CD34 Silent p.V303V 0.18 TCGA-AC-A23H-01 1 208215578 208215578 C T PLXNA2 Missense_Mutation p.G1384D 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-AC-A23H-01 1 209948732 209948732 G C TRAF3IP3 Missense_Mutation p.E271D 0.31 deleterious(0.03) benign(0.132) TCGA-AC-A23H-01 1 209949003 209949003 G C TRAF3IP3 Silent p.L325L 0.32 TCGA-AC-A23H-01 1 209952928 209952928 G T TRAF3IP3 Intron 0.29 TCGA-AC-A23H-01 1 210273701 210273701 G A SYT14 Missense_Mutation p.M398I 0.14 deleterious(0.03) benign(0.127) TCGA-AC-A23H-01 1 210329132 210329132 C G SYT14 Missense_Mutation p.L456V 0.24 tolerated(0.17) benign(0.075) TCGA-AC-A23H-01 1 211545615 211545615 G A TRAF5 Missense_Mutation p.M415I 0.18 tolerated(0.1) benign(0.063) TCGA-AC-A23H-01 1 211652587 211652587 C G RD3 Missense_Mutation p.E127Q 0.29 tolerated(0.19) probably_damaging(0.983) TCGA-AC-A23H-01 1 211847751 211847751 G A NEK2 Silent p.I67I 0.29 TCGA-AC-A23H-01 1 21268047 21268047 C A EIF4G3 Missense_Mutation p.D484Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.498) TCGA-AC-A23H-01 1 212911662 212911662 C A NSL1 3'UTR 0.24 TCGA-AC-A23H-01 1 213434972 213434972 C G RPS6KC1 Missense_Mutation p.L995V 0.17 deleterious(0.03) possibly_damaging(0.795) TCGA-AC-A23H-01 1 214814716 214814716 C T CENPF Missense_Mutation p.S1012L 0.12 benign(0.013) TCGA-AC-A23H-01 1 215408381 215408381 G A KCNK2 Missense_Mutation p.E392K 0.19 deleterious_low_confidence(0.01) benign(0.339) TCGA-AC-A23H-01 1 216496860 216496860 G C USH2A Silent p.L502L 0.18 TCGA-AC-A23H-01 1 216680245 216680245 C T ESRRG 3'UTR 0.08 TCGA-AC-A23H-01 1 216850516 216850516 T C ESRRG Missense_Mutation p.K130R 0.20 tolerated(0.17) probably_damaging(0.972) TCGA-AC-A23H-01 1 220088731 220088731 G A SLC30A10 3'UTR 0.25 TCGA-AC-A23H-01 1 220088925 220088925 T G SLC30A10 Missense_Mutation p.S442R 0.11 tolerated(0.09) benign(0.018) TCGA-AC-A23H-01 1 220156132 220156132 G A EPRS Missense_Mutation p.R1119C 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 220160575 220160575 C T EPRS Missense_Mutation p.D983N 0.30 tolerated(0.07) benign(0.002) TCGA-AC-A23H-01 1 22021660 22021660 G C USP48 Missense_Mutation p.Q928E 0.22 tolerated(0.37) benign(0.101) TCGA-AC-A23H-01 1 22021678 22021678 G A USP48 Nonsense_Mutation p.Q922* 0.22 TCGA-AC-A23H-01 1 220373954 220373954 C G RAB3GAP2 Intron 0.15 TCGA-AC-A23H-01 1 220826452 220826452 G A MARK1 Silent p.Q582Q 0.17 TCGA-AC-A23H-01 1 22160389 22160389 C G HSPG2 Missense_Mutation p.V3584L 0.19 benign(0.141) TCGA-AC-A23H-01 1 221875707 221875707 C G DUSP10 3'UTR 0.11 TCGA-AC-A23H-01 1 22216564 22216564 G A HSPG2 Nonsense_Mutation p.Q162* 0.19 TCGA-AC-A23H-01 1 222695980 222695980 G A HHIPL2 Missense_Mutation p.S713L 0.15 tolerated_low_confidence(0.35) benign(0) TCGA-AC-A23H-01 1 222757538 222757538 C G TAF1A Missense_Mutation p.E75Q 0.17 deleterious(0.05) possibly_damaging(0.843) TCGA-AC-A23H-01 1 222824031 222824031 C G MIA3 Missense_Mutation p.S1259C 0.18 deleterious(0.03) benign(0.257) TCGA-AC-A23H-01 1 222828095 222828095 C T MIA3 Silent p.L1523L 0.14 TCGA-AC-A23H-01 1 223178469 223178469 G T DISP1 Nonsense_Mutation p.E1244* 0.26 TCGA-AC-A23H-01 1 223178998 223178998 G C DISP1 Missense_Mutation p.R1420T 0.17 tolerated_low_confidence(0.09) benign(0.001) TCGA-AC-A23H-01 1 223284309 223284309 C G TLR5 Missense_Mutation p.D689H 0.10 deleterious(0.03) benign(0.065) TCGA-AC-A23H-01 1 223853138 223853138 G C CAPN8 Missense_Mutation p.Q71E 0.34 benign(0.014) TCGA-AC-A23H-01 1 223936738 223936738 C T CAPN2 Intron 0.29 TCGA-AC-A23H-01 1 223987695 223987695 G A TP53BP2 Missense_Mutation p.S464L 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 1 225700669 225700669 G T ENAH Missense_Mutation p.S423Y 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-AC-A23H-01 1 226349284 226349284 C T ACBD3 Missense_Mutation p.E226K 0.33 tolerated(0.09) benign(0.005) TCGA-AC-A23H-01 1 226552837 226552837 C T PARP1 Missense_Mutation p.E842K 0.10 tolerated(0.18) benign(0.042) TCGA-AC-A23H-01 1 227504722 227504722 G C CDC42BPA Silent p.L54L 0.24 TCGA-AC-A23H-01 1 228335209 228335209 C G GUK1 Missense_Mutation p.I139M 0.11 deleterious(0.04) possibly_damaging(0.577) TCGA-AC-A23H-01 1 228463619 228463619 G A OBSCN Missense_Mutation p.E2413K 0.17 probably_damaging(0.928) TCGA-AC-A23H-01 1 228494273 228494273 G A OBSCN Missense_Mutation p.E4911K 0.25 possibly_damaging(0.816) TCGA-AC-A23H-01 1 228527796 228527796 C T OBSCN Silent p.F6760F 0.25 TCGA-AC-A23H-01 1 228528891 228528891 C T OBSCN Silent p.I6888I 0.17 TCGA-AC-A23H-01 1 228645350 228645350 C G HIST3H2A Missense_Mutation p.E57Q 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-AC-A23H-01 1 22903006 22903006 G A EPHA8 Silent p.E152E 0.43 TCGA-AC-A23H-01 1 22915361 22915361 C G EPHA8 Intron 0.20 TCGA-AC-A23H-01 1 22927462 22927462 C A EPHA8 Silent p.L870L 0.21 TCGA-AC-A23H-01 1 229462844 229462844 G A CCSAP Intron 0.16 TCGA-AC-A23H-01 1 229683295 229683295 G C ABCB10 Nonsense_Mutation p.S291* 0.11 TCGA-AC-A23H-01 1 229683354 229683354 C G ABCB10 Missense_Mutation p.L271F 0.16 deleterious(0.04) probably_damaging(0.914) TCGA-AC-A23H-01 1 230459353 230459353 G A PGBD5 Missense_Mutation p.H396Y 0.59 tolerated(0.15) benign(0.068) TCGA-AC-A23H-01 1 230492712 230492712 G C PGBD5 Silent p.L160L 0.11 TCGA-AC-A23H-01 1 230503869 230503869 G A PGBD5 Intron 0.29 TCGA-AC-A23H-01 1 231057185 231057185 C T TTC13 Missense_Mutation p.R627K 0.29 tolerated(0.38) benign(0.223) TCGA-AC-A23H-01 1 231060620 231060620 C G TTC13 Missense_Mutation p.R563T 0.16 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 1 231672988 231672988 G C TSNAX Missense_Mutation p.D51H 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 231830382 231830382 C G DISC1 Missense_Mutation p.S293C 0.37 deleterious(0.04) probably_damaging(0.983) TCGA-AC-A23H-01 1 232940957 232940957 C A MAP10 Nonsense_Mutation p.S63* 0.13 TCGA-AC-A23H-01 1 232941079 232941079 C A MAP10 Missense_Mutation p.P104T 0.22 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-AC-A23H-01 1 233136090 233136090 G A PCNXL2 Silent p.I1763I 0.52 TCGA-AC-A23H-01 1 233353877 233353877 G C PCNXL2 Missense_Mutation p.S853C 0.22 deleterious(0) probably_damaging(0.971) TCGA-AC-A23H-01 1 233802604 233802604 G C KCNK1 Missense_Mutation p.E207Q 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 23395041 23395041 G C KDM1A Missense_Mutation p.E397Q 0.22 tolerated(0.07) possibly_damaging(0.777) TCGA-AC-A23H-01 1 23417965 23417965 C A LUZP1 Missense_Mutation p.L930F 0.18 tolerated(0.06) benign(0.191) TCGA-AC-A23H-01 1 23419095 23419095 G A LUZP1 Nonsense_Mutation p.Q554* 0.27 TCGA-AC-A23H-01 1 234458956 234458956 G C SLC35F3 Missense_Mutation p.K480N 0.29 deleterious(0.04) benign(0.135) TCGA-AC-A23H-01 1 234510040 234510040 G A COA6 Missense_Mutation p.D63N 0.18 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 1 235505938 235505938 G A GGPS1 Missense_Mutation p.E252K 0.35 tolerated(0.14) benign(0.001) TCGA-AC-A23H-01 1 235884046 235884046 C T LYST Missense_Mutation p.D3159N 0.15 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 1 235969126 235969126 G C LYST Missense_Mutation p.R1104G 0.17 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 1 236205271 236205271 C G NID1 Missense_Mutation p.E358D 0.18 tolerated(0.27) benign(0.07) TCGA-AC-A23H-01 1 236766324 236766324 C G HEATR1 Intron 0.28 TCGA-AC-A23H-01 1 236898986 236898986 C G ACTN2 Missense_Mutation p.S250C 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 236908062 236908062 C T ACTN2 Silent p.I464I 0.18 TCGA-AC-A23H-01 1 236959008 236959008 C A MTR Nonsense_Mutation p.S2* 0.30 TCGA-AC-A23H-01 1 23763713 23763713 C G ASAP3 Missense_Mutation p.D418H 0.19 deleterious(0) possibly_damaging(0.823) TCGA-AC-A23H-01 1 237865299 237865299 G C RYR2 Missense_Mutation p.C3130S 0.09 probably_damaging(0.997) TCGA-AC-A23H-01 1 237982376 237982376 G T RYR2 Missense_Mutation p.G4825V 0.17 probably_damaging(0.993) TCGA-AC-A23H-01 1 238045716 238045716 C G ZP4 3'UTR 0.12 TCGA-AC-A23H-01 1 238053779 238053779 G C ZP4 Missense_Mutation p.P53A 0.20 tolerated(0.55) benign(0.146) TCGA-AC-A23H-01 1 240656740 240656740 C G GREM2 Silent p.V12V 0.53 TCGA-AC-A23H-01 1 24112196 24112196 G A PITHD1 Missense_Mutation p.D118N 0.22 deleterious(0.03) possibly_damaging(0.893) TCGA-AC-A23H-01 1 24172288 24172288 G C FUCA1 Missense_Mutation p.L440V 0.36 tolerated(0.21) benign(0.077) TCGA-AC-A23H-01 1 241729866 241729866 G C KMO Missense_Mutation p.D255H 0.32 tolerated(0.06) possibly_damaging(0.806) TCGA-AC-A23H-01 1 241761207 241761207 G T OPN3 Missense_Mutation p.F262L 0.41 tolerated(0.43) benign(0.003) TCGA-AC-A23H-01 1 241761232 241761232 G T OPN3 Missense_Mutation p.A254D 0.16 deleterious(0.03) probably_damaging(0.958) TCGA-AC-A23H-01 1 241798676 241798676 G A CHML Silent p.F131F 0.29 TCGA-AC-A23H-01 1 241799140 241799140 C T CHML 5'UTR 0.43 TCGA-AC-A23H-01 1 241932740 241932740 G A WDR64 Missense_Mutation p.D696N 0.39 tolerated(0.13) benign(0.038) TCGA-AC-A23H-01 1 242042296 242042296 C G EXO1 Missense_Mutation p.S587C 0.34 tolerated(0.11) benign(0.004) TCGA-AC-A23H-01 1 242451670 242451670 T G PLD5 Silent p.A163A 0.15 TCGA-AC-A23H-01 1 243349647 243349647 G A CEP170 Missense_Mutation p.L396F 0.14 deleterious(0) possibly_damaging(0.776) TCGA-AC-A23H-01 1 243493899 243493899 G C SDCCAG8 Missense_Mutation p.E376Q 0.18 deleterious(0) possibly_damaging(0.786) TCGA-AC-A23H-01 1 24384096 24384096 C T MYOM3 Missense_Mutation p.V1358I 0.25 tolerated(0.58) benign(0.002) TCGA-AC-A23H-01 1 24406556 24406556 C G MYOM3 Missense_Mutation p.E846Q 0.18 deleterious(0.04) probably_damaging(0.982) TCGA-AC-A23H-01 1 244724219 244724219 G C C1orf101 Missense_Mutation p.D427H 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-AC-A23H-01 1 244803425 244803425 G C C1orf101 3'UTR 0.16 TCGA-AC-A23H-01 1 2450723 2450723 C T PANK4 Missense_Mutation p.M298I 0.25 tolerated(0.05) benign(0.439) TCGA-AC-A23H-01 1 245222706 245222706 C G EFCAB2 Missense_Mutation p.I43M 0.08 tolerated(0.06) possibly_damaging(0.897) TCGA-AC-A23H-01 1 245318626 245318626 G A KIF26B 5'UTR 0.22 TCGA-AC-A23H-01 1 246811202 246811202 G C CNST Missense_Mutation p.D567H 0.36 deleterious(0.03) probably_damaging(0.922) TCGA-AC-A23H-01 1 247004162 247004162 G A AHCTF1 Silent p.N2258N 0.26 TCGA-AC-A23H-01 1 247013112 247013112 C G AHCTF1 Missense_Mutation p.E2075Q 0.14 deleterious(0.03) probably_damaging(0.928) TCGA-AC-A23H-01 1 247014694 247014694 C G AHCTF1 Missense_Mutation p.R1547S 0.32 tolerated(0.28) benign(0.164) TCGA-AC-A23H-01 1 247014738 247014738 C T AHCTF1 Missense_Mutation p.E1533K 0.22 deleterious(0.02) possibly_damaging(0.843) TCGA-AC-A23H-01 1 247025377 247025377 G C AHCTF1 Missense_Mutation p.L1216V 0.16 tolerated(0.13) benign(0.297) TCGA-AC-A23H-01 1 247320335 247320335 C G ZNF124 Missense_Mutation p.E135Q 0.17 tolerated(0.07) benign(0.369) TCGA-AC-A23H-01 1 247492559 247492559 C G ZNF496 Missense_Mutation p.E108Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 1 247588671 247588671 C A NLRP3 Missense_Mutation p.F642L 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-AC-A23H-01 1 247768951 247768951 C A OR2G3 Missense_Mutation p.R22S 0.21 tolerated(0.13) benign(0.003) TCGA-AC-A23H-01 1 247835510 247835510 C T OR13G1 Silent p.V278V 0.15 TCGA-AC-A23H-01 1 247978165 247978165 C G OR14A16 Missense_Mutation p.L289F 0.25 deleterious(0.01) possibly_damaging(0.788) TCGA-AC-A23H-01 1 248004539 248004539 G T OR11L1 Missense_Mutation p.F220L 0.16 tolerated(0.69) benign(0.022) TCGA-AC-A23H-01 1 248309124 248309124 C G OR2M5 Silent p.V225V 0.17 TCGA-AC-A23H-01 1 248458516 248458516 G C OR2T12 Missense_Mutation p.A122G 0.25 deleterious(0) benign(0.091) TCGA-AC-A23H-01 1 248512625 248512625 G A OR14C36 Silent p.L183L 0.16 TCGA-AC-A23H-01 1 248756692 248756692 G C OR2T10 Missense_Mutation p.I126M 0.14 deleterious(0.01) probably_damaging(0.953) TCGA-AC-A23H-01 1 248757016 248757016 G A OR2T10 Silent p.F18F 0.31 TCGA-AC-A23H-01 1 248845001 248845001 G A OR14I1 Missense_Mutation p.S202L 0.17 tolerated(0.89) benign(0.018) TCGA-AC-A23H-01 1 249141440 249141440 G C ZNF672 5'UTR 0.12 TCGA-AC-A23H-01 1 2494735 2494735 G A TNFRSF14 3'UTR 0.30 TCGA-AC-A23H-01 1 24998795 24998795 G A SRRM1 3'UTR 0.37 TCGA-AC-A23H-01 1 2541172 2541172 C G MMEL1 Missense_Mutation p.E131Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 25810696 25810696 C T TMEM57 Missense_Mutation p.S415L 0.18 tolerated(0.82) benign(0.002) TCGA-AC-A23H-01 1 25812149 25812149 C T TMEM57 Silent p.I453I 0.20 TCGA-AC-A23H-01 1 26527894 26527894 G C CATSPER4 Missense_Mutation p.E417Q 0.43 deleterious(0.01) probably_damaging(0.959) TCGA-AC-A23H-01 1 26582246 26582246 C T CEP85 Nonsense_Mutation p.Q265* 0.44 TCGA-AC-A23H-01 1 26764700 26764700 G A DHDDS Silent p.G35G 0.21 TCGA-AC-A23H-01 1 26800301 26800301 G T HMGN2 Intron 0.16 TCGA-AC-A23H-01 1 27099940 27099940 G A ARID1A Missense_Mutation p.M1273I 0.24 unknown(0) TCGA-AC-A23H-01 1 27189721 27189721 G T SFN Silent p.L6L 0.17 TCGA-AC-A23H-01 1 27190072 27190072 G T SFN Missense_Mutation p.M123I 0.31 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-AC-A23H-01 1 27220757 27220757 C T GPATCH3 Missense_Mutation p.D341N 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 27220864 27220864 G A GPATCH3 Missense_Mutation p.A305V 0.22 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 1 27627856 27627856 G A WDTC1 Missense_Mutation p.D457N 0.24 tolerated(0.58) benign(0.012) TCGA-AC-A23H-01 1 27673972 27673972 C G SYTL1 Missense_Mutation p.F84L 0.29 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 28060639 28060639 C G FAM76A Missense_Mutation p.S134C 0.24 deleterious(0) possibly_damaging(0.882) TCGA-AC-A23H-01 1 28208594 28208594 G T THEMIS2 Silent p.L253L 0.29 TCGA-AC-A23H-01 1 28209287 28209287 A C THEMIS2 Silent p.P484P 0.29 TCGA-AC-A23H-01 1 28279862 28279862 C T SMPDL3B Silent p.F170F 0.26 TCGA-AC-A23H-01 1 28823073 28823073 G T PHACTR4 3'UTR 0.23 TCGA-AC-A23H-01 1 28864592 28864592 G A RCC1 3'UTR 0.19 TCGA-AC-A23H-01 1 29447470 29447470 G C TMEM200B Missense_Mutation p.L291V 0.36 deleterious(0) unknown(0) TCGA-AC-A23H-01 1 32100927 32100927 G C PEF1 Missense_Mutation p.S74C 0.28 tolerated(0.07) unknown(0) TCGA-AC-A23H-01 1 32205600 32205600 C G BAI2 Silent p.V698V 0.24 TCGA-AC-A23H-01 1 32222993 32222993 G T BAI2 5'UTR 0.31 TCGA-AC-A23H-01 1 32680469 32680469 C G DCDC2B Missense_Mutation p.F262L 0.20 tolerated(0.08) benign(0.03) TCGA-AC-A23H-01 1 32798683 32798683 C T HDAC1 3'UTR 0.23 TCGA-AC-A23H-01 1 33065914 33065914 G A ZBTB8A Missense_Mutation p.R407K 0.18 benign(0.002) TCGA-AC-A23H-01 1 33478769 33478769 C T AK2 3'UTR 0.27 TCGA-AC-A23H-01 1 34123697 34123697 C G CSMD2 Missense_Mutation p.Q1392H 0.22 deleterious(0.04) possibly_damaging(0.903) TCGA-AC-A23H-01 1 34174866 34174866 G C CSMD2 Intron 0.19 TCGA-AC-A23H-01 1 34209028 34209028 C G CSMD2 Missense_Mutation p.D636H 0.29 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 1 3431172 3431172 G A MEGF6 Silent p.L265L 0.30 TCGA-AC-A23H-01 1 35227254 35227254 G C GJB4 Silent p.L133L 0.23 TCGA-AC-A23H-01 1 35227537 35227537 G C GJB4 Missense_Mutation p.E228Q 0.32 tolerated(0.49) benign(0.001) TCGA-AC-A23H-01 1 35453172 35453172 C G ZMYM6 Missense_Mutation p.E1171Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-AC-A23H-01 1 35559682 35559682 C G ZMYM1 Missense_Mutation p.Q32E 0.33 tolerated_low_confidence(0.15) benign(0.18) TCGA-AC-A23H-01 1 35579217 35579217 G C ZMYM1 Missense_Mutation p.D596H 0.24 tolerated(0.06) probably_damaging(1) TCGA-AC-A23H-01 1 35881077 35881077 C T ZMYM4 Silent p.F1357F 0.32 TCGA-AC-A23H-01 1 36201913 36201913 G C CLSPN 3'Flank 0.18 TCGA-AC-A23H-01 1 36208788 36208788 C T CLSPN Missense_Mutation p.D1033N 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-AC-A23H-01 1 36212416 36212416 C T CLSPN Silent p.E935E 0.25 TCGA-AC-A23H-01 1 36372656 36372656 C G AGO1 Silent p.L506L 0.24 TCGA-AC-A23H-01 1 36379798 36379798 C G AGO1 Missense_Mutation p.Q586E 0.17 tolerated(0.16) probably_damaging(0.965) TCGA-AC-A23H-01 1 36474555 36474555 C T AGO3 Silent p.F313F 0.32 TCGA-AC-A23H-01 1 36603505 36603505 G C TRAPPC3 Silent p.L105L 0.28 TCGA-AC-A23H-01 1 36921380 36921380 G A MRPS15 3'UTR 0.20 TCGA-AC-A23H-01 1 37291371 37291371 G T GRIK3 Silent p.I529I 0.26 TCGA-AC-A23H-01 1 37319310 37319310 C T GRIK3 Missense_Mutation p.G373E 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 38032242 38032242 C - DNALI1 3'UTR 0.38 TCGA-AC-A23H-01 1 38061471 38061471 G C GNL2 5'UTR 0.28 TCGA-AC-A23H-01 1 38272574 38272574 G A YRDC Silent p.L193L 0.20 TCGA-AC-A23H-01 1 38511527 38511527 C G POU3F1 Missense_Mutation p.E297Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 1 40702532 40702532 C T RLF Nonsense_Mutation p.R720* 0.21 TCGA-AC-A23H-01 1 40705496 40705496 G C RLF Missense_Mutation p.E1708Q 0.25 tolerated(0.22) probably_damaging(0.997) TCGA-AC-A23H-01 1 40723841 40723841 C T ZMPSTE24 5'UTR 0.22 TCGA-AC-A23H-01 1 41095016 41095016 C G RIMS3 Silent p.R167R 0.20 TCGA-AC-A23H-01 1 41236499 41236499 G A NFYC Silent p.%3D 0.20 TCGA-AC-A23H-01 1 41457506 41457506 G A CTPS1 Missense_Mutation p.E237K 0.25 tolerated(0.31) benign(0.022) TCGA-AC-A23H-01 1 41979293 41979293 C G HIVEP3 Missense_Mutation p.E1867Q 0.14 possibly_damaging(0.583) TCGA-AC-A23H-01 1 42047347 42047347 C G HIVEP3 Missense_Mutation p.R1041T 0.25 probably_damaging(0.996) TCGA-AC-A23H-01 1 42047774 42047774 C G HIVEP3 Missense_Mutation p.E899Q 0.26 probably_damaging(0.997) TCGA-AC-A23H-01 1 42048590 42048590 C T HIVEP3 Missense_Mutation p.E627K 0.28 benign(0.254) TCGA-AC-A23H-01 1 43111899 43111899 G A CCDC30 Missense_Mutation p.E662K 0.30 tolerated(0.46) benign(0.001) TCGA-AC-A23H-01 1 43218318 43218318 C T LEPRE1 Missense_Mutation p.E455K 0.14 deleterious(0.03) benign(0.036) TCGA-AC-A23H-01 1 43855596 43855596 T A SZT2 5'Flank 0.32 TCGA-AC-A23H-01 1 43902853 43902853 G C SZT2 Missense_Mutation p.D1959H 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-AC-A23H-01 1 43908006 43908006 G A SZT2 Silent p.Q2590Q 0.32 TCGA-AC-A23H-01 1 43908579 43908579 G C SZT2 Silent p.L2690L 0.22 TCGA-AC-A23H-01 1 43908748 43908748 G A SZT2 Missense_Mutation p.E2747K 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 1 44086512 44086512 G A PTPRF Missense_Mutation p.G1790R 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 44365339 44365339 C T ST3GAL3 Silent p.L297L 0.20 TCGA-AC-A23H-01 1 44401274 44401274 G C ARTN 5'UTR 0.31 TCGA-AC-A23H-01 1 44413313 44413313 G A IPO13 Missense_Mutation p.G14E 0.25 tolerated_low_confidence(0.11) benign(0.007) TCGA-AC-A23H-01 1 44415664 44415664 G C IPO13 Missense_Mutation p.Q220H 0.33 tolerated(0.23) benign(0.043) TCGA-AC-A23H-01 1 44423181 44423181 C T IPO13 Silent p.I500I 0.27 TCGA-AC-A23H-01 1 45110945 45110945 G A RNF220 Missense_Mutation p.D455N 0.30 deleterious(0.04) possibly_damaging(0.643) TCGA-AC-A23H-01 1 45274488 45274488 C T BTBD19 5'UTR 0.24 TCGA-AC-A23H-01 1 45444133 45444133 C T EIF2B3 Splice_Site p.X50_splice 0.20 TCGA-AC-A23H-01 1 45484876 45484876 G A ZSWIM5 Silent p.L936L 0.26 TCGA-AC-A23H-01 1 45501903 45501903 C A ZSWIM5 Nonsense_Mutation p.E655* 0.25 TCGA-AC-A23H-01 1 45923281 45923281 G A TESK2 Silent p.F59F 0.25 TCGA-AC-A23H-01 1 45960656 45960656 G C CCDC163P 3'Flank 0.46 TCGA-AC-A23H-01 1 46034154 46034154 C T AKR1A1 Intron 0.21 TCGA-AC-A23H-01 1 46509513 46509513 G T PIK3R3 Silent p.I406I 0.21 TCGA-AC-A23H-01 1 46743953 46743953 G T RAD54L Nonstop_Mutation p.*748Lext*1 0.19 TCGA-AC-A23H-01 1 47611873 47611873 C G CYP4A22 Intron 0.27 TCGA-AC-A23H-01 1 47717300 47717300 C G STIL Missense_Mutation p.K1125N 0.31 deleterious(0) possibly_damaging(0.776) TCGA-AC-A23H-01 1 47882467 47882467 C T FOXE3 Silent p.F160F 0.64 TCGA-AC-A23H-01 1 4832432 4832432 C G AJAP1 Missense_Mutation p.S337W 0.24 deleterious(0) possibly_damaging(0.485) TCGA-AC-A23H-01 1 48705107 48705107 G C SLC5A9 Silent p.L550L 0.22 TCGA-AC-A23H-01 1 50907117 50907117 C G FAF1 Missense_Mutation p.E650Q 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AC-A23H-01 1 52231525 52231525 C T OSBPL9 Silent p.L280L 0.22 TCGA-AC-A23H-01 1 52249974 52249974 C T OSBPL9 Missense_Mutation p.L565F 0.45 deleterious(0.01) benign(0.222) TCGA-AC-A23H-01 1 52299702 52299702 C T NRD1 Missense_Mutation p.E353K 0.22 deleterious(0.04) benign(0.292) TCGA-AC-A23H-01 1 52729509 52729509 G C ZFYVE9 Missense_Mutation p.R748T 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 52805814 52805814 G C ZFYVE9 Missense_Mutation p.D1284H 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 1 52805823 52805823 T C ZFYVE9 Missense_Mutation p.S1287P 0.20 tolerated(0.12) probably_damaging(0.939) TCGA-AC-A23H-01 1 52805901 52805901 G C ZFYVE9 Missense_Mutation p.E1313Q 0.18 deleterious(0.03) probably_damaging(0.995) TCGA-AC-A23H-01 1 52870393 52870393 G C PRPF38A 5'UTR 0.29 TCGA-AC-A23H-01 1 52897083 52897083 G C ZCCHC11 Missense_Mutation p.S1438C 0.28 deleterious(0.01) possibly_damaging(0.866) TCGA-AC-A23H-01 1 52897102 52897102 G A ZCCHC11 Nonsense_Mutation p.Q1432* 0.27 TCGA-AC-A23H-01 1 53377470 53377470 G A ECHDC2 Intron 0.56 TCGA-AC-A23H-01 1 53556556 53556556 C T SLC1A7 Intron 0.28 TCGA-AC-A23H-01 1 53726154 53726154 C T LRP8 Missense_Mutation p.E680K 0.29 deleterious(0.05) possibly_damaging(0.799) TCGA-AC-A23H-01 1 53972413 53972413 G A GLIS1 Missense_Mutation p.A581V 0.29 tolerated_low_confidence(0.2) benign(0.002) TCGA-AC-A23H-01 1 54233649 54233649 T G NDC1 Missense_Mutation p.K673N 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 54272104 54272104 G C NDC1 Missense_Mutation p.I326M 0.21 deleterious(0) probably_damaging(0.964) TCGA-AC-A23H-01 1 54426066 54426066 G C LRRC42 Missense_Mutation p.D215H 0.29 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 1 54649921 54649921 C T CYB5RL Silent p.L151L 0.17 TCGA-AC-A23H-01 1 55277764 55277764 G T C1orf177 Nonsense_Mutation p.E222* 0.27 TCGA-AC-A23H-01 1 55331084 55331084 G C DHCR24 Missense_Mutation p.F304L 0.17 deleterious(0) probably_damaging(0.977) TCGA-AC-A23H-01 1 57192252 57192252 C T C1orf168 Missense_Mutation p.E600K 0.19 tolerated(0.12) possibly_damaging(0.527) TCGA-AC-A23H-01 1 57415299 57415299 C T C8B Missense_Mutation p.E265K 0.27 deleterious(0.03) possibly_damaging(0.885) TCGA-AC-A23H-01 1 5924479 5924479 G A NPHP4 Silent p.L1305L 0.22 TCGA-AC-A23H-01 1 6029191 6029191 G A NPHP4 Silent p.F136F 0.19 TCGA-AC-A23H-01 1 60294449 60294449 C T HOOK1 Intron 0.23 TCGA-AC-A23H-01 1 60456209 60456209 C G C1orf87 3'UTR 0.26 TCGA-AC-A23H-01 1 6046245 6046245 G C NPHP4 Silent p.L35L 0.28 TCGA-AC-A23H-01 1 60506693 60506693 C G C1orf87 Missense_Mutation p.Q151H 0.21 tolerated(0.21) benign(0.004) TCGA-AC-A23H-01 1 6211099 6211099 C A CHD5 Missense_Mutation p.K329N 0.31 deleterious(0.02) possibly_damaging(0.598) TCGA-AC-A23H-01 1 62253532 62253532 C A INADL Nonsense_Mutation p.S319* 0.14 TCGA-AC-A23H-01 1 6273227 6273227 G C RNF207 Missense_Mutation p.E546Q 0.21 deleterious(0.04) possibly_damaging(0.688) TCGA-AC-A23H-01 1 63064463 63064463 G C ANGPTL3 Missense_Mutation p.E198Q 0.19 tolerated(0.17) benign(0.374) TCGA-AC-A23H-01 1 63085640 63085640 C A DOCK7 Missense_Mutation p.D484Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 1 6324653 6324653 G C ACOT7 3'UTR 0.17 TCGA-AC-A23H-01 1 63836540 63836540 C G ALG6 5'UTR 0.19 TCGA-AC-A23H-01 1 64011715 64011715 G C EFCAB7 Silent p.L311L 0.43 TCGA-AC-A23H-01 1 6556591 6556591 G A PLEKHG5 Nonsense_Mutation p.Q38* 0.21 TCGA-AC-A23H-01 1 66036405 66036405 G C LEPR Missense_Mutation p.R97T 0.21 tolerated(0.59) benign(0) TCGA-AC-A23H-01 1 66798131 66798131 C G PDE4B Intron 0.18 TCGA-AC-A23H-01 1 66838181 66838181 G C PDE4B Missense_Mutation p.K677N 0.28 deleterious(0.02) probably_damaging(0.927) TCGA-AC-A23H-01 1 6697333 6697333 C T DNAJC11 Silent p.V483V 0.25 TCGA-AC-A23H-01 1 67450619 67450619 C G MIER1 3'UTR 0.28 TCGA-AC-A23H-01 1 67861458 67861458 G A IL12RB2 Missense_Mutation p.E759K 0.30 deleterious(0.02) possibly_damaging(0.698) TCGA-AC-A23H-01 1 68620944 68620944 C G WLS Splice_Site p.X167_splice 0.31 TCGA-AC-A23H-01 1 68948474 68948474 G C DEPDC1 Missense_Mutation p.F339L 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A23H-01 1 74834917 74834917 C T FPGT-TNNI3K Nonsense_Mutation p.R595* 0.28 TCGA-AC-A23H-01 1 74954930 74954930 G A TNNI3K Missense_Mutation p.E828K 0.17 deleterious_low_confidence(0.04) benign(0.352) TCGA-AC-A23H-01 1 75036953 75036953 C T C1orf173 Missense_Mutation p.E1481K 0.21 deleterious(0.04) benign(0.242) TCGA-AC-A23H-01 1 75055630 75055630 G A C1orf173 Nonsense_Mutation p.Q621* 0.18 TCGA-AC-A23H-01 1 75184934 75184934 G A CRYZ Silent p.I129I 0.26 TCGA-AC-A23H-01 1 76280772 76280772 C A MSH4 Missense_Mutation p.Q256K 0.19 deleterious(0.04) benign(0.217) TCGA-AC-A23H-01 1 78097563 78097563 C G ZZZ3 Missense_Mutation p.D493H 0.29 deleterious(0) probably_damaging(0.969) TCGA-AC-A23H-01 1 78414917 78414917 C G FUBP1 Missense_Mutation p.E617Q 0.15 deleterious(0) unknown(0) TCGA-AC-A23H-01 1 79129447 79129447 C G IFI44 Intron 0.26 TCGA-AC-A23H-01 1 79403801 79403801 G A ELTD1 Missense_Mutation p.S187F 0.50 tolerated(0.27) benign(0.005) TCGA-AC-A23H-01 1 79470885 79470885 C T ELTD1 Silent p.L14L 0.23 TCGA-AC-A23H-01 1 84988083 84988083 C G SPATA1 RNA 0.19 TCGA-AC-A23H-01 1 85331684 85331684 G A LPAR3 Silent p.F40F 0.16 TCGA-AC-A23H-01 1 85666146 85666146 G - SYDE2 Frame_Shift_Del p.S179Pfs*8 0.24 TCGA-AC-A23H-01 1 85718298 85718298 C G C1orf52 3'UTR 0.22 TCGA-AC-A23H-01 1 86848875 86848875 C G ODF2L Missense_Mutation p.G126A 0.12 tolerated(0.22) benign(0.018) TCGA-AC-A23H-01 1 86851146 86851146 C G ODF2L Missense_Mutation p.E81Q 0.25 tolerated(0.21) possibly_damaging(0.802) TCGA-AC-A23H-01 1 86896607 86896607 G A CLCA2 Missense_Mutation p.D180N 0.17 tolerated(0.07) possibly_damaging(0.626) TCGA-AC-A23H-01 1 86913346 86913346 G A CLCA2 Missense_Mutation p.M623I 0.24 tolerated(1) benign(0.003) TCGA-AC-A23H-01 1 86951097 86951097 C T CLCA1 Silent p.L269L 0.23 TCGA-AC-A23H-01 1 86965765 86965765 C T CLCA1 3'UTR 0.33 TCGA-AC-A23H-01 1 87208822 87208822 G C SH3GLB1 Silent p.V355V 0.25 TCGA-AC-A23H-01 1 89401821 89401821 C G CCBL2 3'UTR 0.24 TCGA-AC-A23H-01 1 89473157 89473157 G A GBP3 3'UTR 0.20 TCGA-AC-A23H-01 1 89848300 89848300 C G GBP6 Silent p.L410L 0.28 TCGA-AC-A23H-01 1 91403267 91403267 C T ZNF644 Missense_Mutation p.E1155K 0.27 tolerated(0.15) benign(0.2) TCGA-AC-A23H-01 1 92442614 92442614 G A BRDT Silent p.V211V 0.20 TCGA-AC-A23H-01 1 92508443 92508443 G C EPHX4 Missense_Mutation p.L127F 0.25 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 1 92633432 92633432 C G KIAA1107 Missense_Mutation p.L7V 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 1 92636976 92636976 G A KIAA1107 Missense_Mutation p.D94N 0.27 tolerated(0.07) possibly_damaging(0.449) TCGA-AC-A23H-01 1 92647709 92647709 G A KIAA1107 Missense_Mutation p.R1052Q 0.26 tolerated(0.82) benign(0.001) TCGA-AC-A23H-01 1 92752094 92752094 C T GLMN Missense_Mutation p.E230K 0.28 tolerated(0.25) benign(0.035) TCGA-AC-A23H-01 1 93301752 93301752 C G RPL5 Silent p.L110L 0.28 TCGA-AC-A23H-01 1 93722092 93722092 G A CCDC18 Silent p.E1234E 0.18 TCGA-AC-A23H-01 1 94033396 94033396 C T BCAR3 Missense_Mutation p.E663K 0.29 deleterious(0) possibly_damaging(0.668) TCGA-AC-A23H-01 1 94342230 94342230 C G DNTTIP2 Missense_Mutation p.E421Q 0.49 deleterious(0.02) possibly_damaging(0.907) TCGA-AC-A23H-01 1 94480237 94480237 G A ABCA4 Silent p.V1774V 0.21 TCGA-AC-A23H-01 1 94643593 94643593 G C ARHGAP29 Missense_Mutation p.Q871E 0.20 deleterious(0) benign(0.254) TCGA-AC-A23H-01 1 95392558 95392558 C G CNN3 5'UTR 0.30 TCGA-AC-A23H-01 1 95609499 95609499 C G TMEM56 Missense_Mutation p.I14M 0.21 deleterious(0.03) benign(0.212) TCGA-AC-A23H-01 1 9613784 9613784 C T SLC25A33 Nonsense_Mutation p.Q53* 0.26 TCGA-AC-A23H-01 1 97770898 97770898 G C DPYD Nonsense_Mutation p.S739* 0.30 TCGA-AC-A23H-01 1 99387467 99387467 G T LPPR5 Missense_Mutation p.L257M 0.29 deleterious(0.01) possibly_damaging(0.51) TCGA-AC-A23H-01 20 10019148 10019148 C T ANKEF1 Missense_Mutation p.L67F 0.20 deleterious(0.02) probably_damaging(1) TCGA-AC-A23H-01 20 10385870 10385870 C G MKKS 3'UTR 0.48 TCGA-AC-A23H-01 20 10389304 10389304 C A MKKS Missense_Mutation p.R378I 0.18 deleterious(0) possibly_damaging(0.9) TCGA-AC-A23H-01 20 10389392 10389392 C A MKKS Missense_Mutation p.D349Y 0.21 deleterious(0) probably_damaging(0.964) TCGA-AC-A23H-01 20 1108104 1108104 G A PSMF1 Silent p.L106L 0.17 TCGA-AC-A23H-01 20 1162066 1162066 G A TMEM74B Missense_Mutation p.S66L 0.13 tolerated(0.2) benign(0.004) TCGA-AC-A23H-01 20 1220030 1220030 G A RAD21L1 Missense_Mutation p.E241K 0.24 tolerated(0.12) possibly_damaging(0.791) TCGA-AC-A23H-01 20 1223478 1223478 G C RAD21L1 Missense_Mutation p.E358Q 0.20 tolerated(0.11) benign(0.046) TCGA-AC-A23H-01 20 1285648 1285648 C G SNPH Silent p.L145L 0.16 TCGA-AC-A23H-01 20 13029656 13029656 C T SPTLC3 Missense_Mutation p.H61Y 0.18 tolerated(1) benign(0) TCGA-AC-A23H-01 20 13398117 13398117 G C TASP1 Nonsense_Mutation p.S383* 0.14 TCGA-AC-A23H-01 20 13971253 13971253 C A SEL1L2 5'UTR 0.11 TCGA-AC-A23H-01 20 1444998 1444998 G A NSFL1C Missense_Mutation p.S60L 0.18 tolerated(0.28) benign(0.019) TCGA-AC-A23H-01 20 1585668 1585668 C T SIRPB1 Intron 0.19 TCGA-AC-A23H-01 20 16030489 16030489 G T MACROD2 Nonsense_Mutation p.E416* 0.22 TCGA-AC-A23H-01 20 1615941 1615941 C G SIRPG Missense_Mutation p.Q351H 0.14 deleterious(0.03) possibly_damaging(0.687) TCGA-AC-A23H-01 20 16351251 16351251 G C KIF16B Missense_Mutation p.Q1160E 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-AC-A23H-01 20 16721632 16721632 C T SNRPB2 Silent p.I220I 0.12 TCGA-AC-A23H-01 20 17495393 17495393 G A BFSP1 Silent p.I169I 0.16 TCGA-AC-A23H-01 20 17640694 17640694 G C RRBP1 Silent p.V153V 0.13 TCGA-AC-A23H-01 20 18143130 18143130 C T CSRP2BP Silent p.V404V 0.20 TCGA-AC-A23H-01 20 18143374 18143374 C T CSRP2BP Missense_Mutation p.P486S 0.22 tolerated(0.25) benign(0.04) TCGA-AC-A23H-01 20 18163927 18163927 G T CSRP2BP Nonsense_Mutation p.E657* 0.14 TCGA-AC-A23H-01 20 18165353 18165353 G A CSRP2BP Missense_Mutation p.E698K 0.18 deleterious(0) probably_damaging(0.972) TCGA-AC-A23H-01 20 18168007 18168007 C G CSRP2BP Missense_Mutation p.F751L 0.18 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 20 18296107 18296107 G T ZNF133 Missense_Mutation p.K203N 0.56 tolerated(0.1) benign(0.397) TCGA-AC-A23H-01 20 18297346 18297346 C G ZNF133 Silent p.L616L 0.17 TCGA-AC-A23H-01 20 18464271 18464271 G T POLR3F 3'UTR 0.10 TCGA-AC-A23H-01 20 19981467 19981467 G C RIN2 Missense_Mutation p.E908Q 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-AC-A23H-01 20 19981496 19981496 C G RIN2 Missense_Mutation p.I917M 0.10 tolerated(0.1) benign(0.309) TCGA-AC-A23H-01 20 210487 210487 C G DEFB129 3'UTR 0.15 TCGA-AC-A23H-01 20 21143508 21143508 G T RP4-777D9.2 RNA 0.13 TCGA-AC-A23H-01 20 21492953 21492953 C T NKX2-2 Missense_Mutation p.E144K 0.16 deleterious(0.03) probably_damaging(0.989) TCGA-AC-A23H-01 20 23350824 23350824 G C GZF1 Missense_Mutation p.E628Q 0.17 deleterious(0.02) possibly_damaging(0.475) TCGA-AC-A23H-01 20 23966734 23966734 G C GGTLC1 Missense_Mutation p.P95A 0.12 deleterious(0.02) benign(0.417) TCGA-AC-A23H-01 20 2413298 2413298 G C TGM6 3'UTR 0.29 TCGA-AC-A23H-01 20 24523920 24523920 G C SYNDIG1 Missense_Mutation p.D63H 0.12 tolerated(0.13) benign(0.245) TCGA-AC-A23H-01 20 25295604 25295604 C T ABHD12 Silent p.V192V 0.14 TCGA-AC-A23H-01 20 25597039 25597039 C G NANP Missense_Mutation p.R90T 0.24 tolerated(0.21) benign(0.387) TCGA-AC-A23H-01 20 25755901 25755901 C T FAM182B Missense_Mutation p.E19K 0.15 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-AC-A23H-01 20 2575596 2575596 G C TMC2 Silent p.L353L 0.13 TCGA-AC-A23H-01 20 2621879 2621879 C G TMC2 Missense_Mutation p.S868C 0.15 deleterious(0.02) possibly_damaging(0.524) TCGA-AC-A23H-01 20 2637850 2637850 C G NOP56 Missense_Mutation p.P469A 0.17 tolerated(0.52) benign(0.002) TCGA-AC-A23H-01 20 2639177 2639177 G A IDH3B 3'UTR 0.15 TCGA-AC-A23H-01 20 2639241 2639241 C T IDH3B 3'UTR 0.16 TCGA-AC-A23H-01 20 2796077 2796077 G A C20orf141 Missense_Mutation p.D83N 0.12 tolerated(0.06) possibly_damaging(0.728) TCGA-AC-A23H-01 20 2796450 2796450 C G C20orf141 3'UTR 0.13 TCGA-AC-A23H-01 20 2841666 2841666 C G VPS16 Silent p.V227V 0.13 TCGA-AC-A23H-01 20 2843950 2843950 G A VPS16 Missense_Mutation p.R461K 0.11 tolerated(0.21) benign(0.026) TCGA-AC-A23H-01 20 3016453 3016453 G T PTPRA Missense_Mutation p.Q688H 0.12 tolerated(0.09) possibly_damaging(0.673) TCGA-AC-A23H-01 20 30309730 30309730 C T BCL2L1 Missense_Mutation p.E98K 0.11 deleterious(0) possibly_damaging(0.534) TCGA-AC-A23H-01 20 30370073 30370073 C T TPX2 Missense_Mutation p.S359F 0.16 deleterious(0.05) benign(0.084) TCGA-AC-A23H-01 20 30414464 30414464 C T MYLK2 Silent p.I343I 0.19 TCGA-AC-A23H-01 20 30496503 30496503 G C TTLL9 Missense_Mutation p.E106Q 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-AC-A23H-01 20 30598284 30598284 G A CCM2L Silent p.K9K 0.12 TCGA-AC-A23H-01 20 30746280 30746280 T C TM9SF4 Missense_Mutation p.F511S 0.61 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 20 30795824 30795824 G A POFUT1 Missense_Mutation p.G27D 0.27 tolerated(0.62) benign(0.002) TCGA-AC-A23H-01 20 31421537 31421537 C T MAPRE1 Nonsense_Mutation p.Q46* 0.13 TCGA-AC-A23H-01 20 31573676 31573676 C T SUN5 Missense_Mutation p.E255K 0.15 tolerated(0.38) benign(0.186) TCGA-AC-A23H-01 20 31577481 31577481 C T SUN5 Missense_Mutation p.M186I 0.11 tolerated(0.08) benign(0.006) TCGA-AC-A23H-01 20 3214955 3214955 C T SLC4A11 Silent p.L142L 0.14 TCGA-AC-A23H-01 20 3215416 3215416 G C SLC4A11 Silent p.V114V 0.18 TCGA-AC-A23H-01 20 32358036 32358036 G A ZNF341 Silent p.V513V 0.19 TCGA-AC-A23H-01 20 32878192 32878192 G A AHCY Silent p.I306I 0.15 TCGA-AC-A23H-01 20 33026307 33026307 G A ITCH Missense_Mutation p.E225K 0.14 tolerated(0.51) benign(0.045) TCGA-AC-A23H-01 20 33095605 33095605 G C ITCH 3'UTR 0.18 TCGA-AC-A23H-01 20 33328637 33328637 C T NCOA6 Missense_Mutation p.R1808Q 0.19 probably_damaging(0.99) TCGA-AC-A23H-01 20 33345516 33345516 C T NCOA6 Silent p.K345K 0.16 TCGA-AC-A23H-01 20 33509628 33509628 G C ACSS2 Missense_Mutation p.E516Q 0.16 tolerated(0.07) probably_damaging(1) TCGA-AC-A23H-01 20 33529601 33529601 C G GSS Missense_Mutation p.E175Q 0.19 tolerated(0.09) possibly_damaging(0.819) TCGA-AC-A23H-01 20 33584527 33584527 C G MYH7B Missense_Mutation p.Q1120E 0.23 benign(0.047) TCGA-AC-A23H-01 20 33587190 33587190 G A MYH7B Missense_Mutation p.E1550K 0.29 probably_damaging(0.997) TCGA-AC-A23H-01 20 33590079 33590079 C T MYH7B 3'UTR 0.74 TCGA-AC-A23H-01 20 33759963 33759963 G T PROCR Missense_Mutation p.L2F 0.19 tolerated_low_confidence(0.2) unknown(0) TCGA-AC-A23H-01 20 33764768 33764768 G C PROCR 3'UTR 0.16 TCGA-AC-A23H-01 20 33842446 33842446 G C MMP24 Missense_Mutation p.D236H 0.11 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 20 33935018 33935018 G C UQCC1 Missense_Mutation p.I174M 0.23 tolerated(0.2) benign(0.409) TCGA-AC-A23H-01 20 34090500 34090500 G C CEP250 Missense_Mutation p.E1435Q 0.17 benign(0.009) TCGA-AC-A23H-01 20 34206844 34206844 G C SPAG4 Splice_Site p.X240_splice 0.20 TCGA-AC-A23H-01 20 34207631 34207631 G A SPAG4 Missense_Mutation p.G347E 0.28 deleterious(0.04) benign(0.35) TCGA-AC-A23H-01 20 34459740 34459740 C T PHF20 Missense_Mutation p.S424L 0.17 deleterious(0.01) possibly_damaging(0.536) TCGA-AC-A23H-01 20 34542091 34542091 G A SCAND1 Missense_Mutation p.S39L 0.27 deleterious_low_confidence(0.03) benign(0.003) TCGA-AC-A23H-01 20 35154287 35154287 G A DLGAP4 Missense_Mutation p.D877N 0.10 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 20 35219839 35219839 C T TGIF2 3'UTR 0.17 TCGA-AC-A23H-01 20 35284791 35284791 G A NDRG3 Silent p.F306F 0.14 TCGA-AC-A23H-01 20 35310952 35310952 C G NDRG3 Missense_Mutation p.G138A 0.16 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 20 35406085 35406085 C G SOGA1 3'UTR 0.23 TCGA-AC-A23H-01 20 35422288 35422288 G A SOGA1 Silent p.L1399L 0.18 TCGA-AC-A23H-01 20 35521503 35521503 G C TLDC2 3'UTR 0.17 TCGA-AC-A23H-01 20 35695166 35695166 G C RBL1 Missense_Mutation p.H269Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 20 35743692 35743692 C T MROH8 Missense_Mutation p.E834K 0.14 tolerated(0.12) possibly_damaging(0.671) TCGA-AC-A23H-01 20 35884893 35884893 C T GHRH Missense_Mutation p.R31Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 20 36024662 36024662 C T SRC Silent p.I217I 0.42 TCGA-AC-A23H-01 20 3619547 3619547 G C ATRN Missense_Mutation p.E1339Q 0.14 tolerated(0.19) benign(0.012) TCGA-AC-A23H-01 20 36676792 36676792 G C RPRD1B Silent p.L108L 0.16 TCGA-AC-A23H-01 20 36760783 36760783 C G TGM2 Missense_Mutation p.E579Q 0.19 tolerated(0.29) benign(0.052) TCGA-AC-A23H-01 20 36770540 36770540 C T TGM2 Silent p.Q307Q 0.19 TCGA-AC-A23H-01 20 36789841 36789841 G A TGM2 Silent p.L57L 0.13 TCGA-AC-A23H-01 20 36999943 36999943 G A LBP Missense_Mutation p.E413K 0.11 deleterious(0.03) possibly_damaging(0.622) TCGA-AC-A23H-01 20 37117154 37117154 G C RALGAPB Missense_Mutation p.E27Q 0.55 tolerated(0.48) benign(0.124) TCGA-AC-A23H-01 20 37154615 37154615 G C RALGAPB Missense_Mutation p.L660F 0.19 tolerated(0.19) benign(0.023) TCGA-AC-A23H-01 20 3731521 3731521 C T HSPA12B Nonsense_Mutation p.Q458* 0.37 TCGA-AC-A23H-01 20 3759097 3759097 C G SPEF1 Missense_Mutation p.E192Q 0.12 deleterious(0.03) probably_damaging(0.939) TCGA-AC-A23H-01 20 3761944 3761944 C G SPEF1 5'UTR 0.18 TCGA-AC-A23H-01 20 37630471 37630471 C G DHX35 Missense_Mutation p.I247M 0.13 deleterious(0.03) possibly_damaging(0.548) TCGA-AC-A23H-01 20 377058 377058 C G TRIB3 Silent p.V267V 0.22 TCGA-AC-A23H-01 20 3835218 3835218 C G MAVS 5'UTR 0.23 TCGA-AC-A23H-01 20 39704876 39704876 C G TOP1 Nonsense_Mutation p.S74* 0.16 TCGA-AC-A23H-01 20 39798809 39798809 C T PLCG1 Missense_Mutation p.S903L 0.18 tolerated(0.12) benign(0.048) TCGA-AC-A23H-01 20 39800883 39800883 C G PLCG1 Silent p.L953L 0.12 TCGA-AC-A23H-01 20 39832166 39832166 G C ZHX3 Nonsense_Mutation p.S464* 0.13 TCGA-AC-A23H-01 20 40122518 40122518 T C CHD6 Missense_Mutation p.K387E 0.12 tolerated(0.56) benign(0.103) TCGA-AC-A23H-01 20 40747129 40747129 C T PTPRT Missense_Mutation p.E966K 0.15 deleterious(0) possibly_damaging(0.596) TCGA-AC-A23H-01 20 409630 409630 C T RBCK1 Silent p.P448P 0.19 TCGA-AC-A23H-01 20 417492 417492 C T TBC1D20 3'UTR 0.16 TCGA-AC-A23H-01 20 42249563 42249563 G C IFT52 Missense_Mutation p.E256Q 0.10 deleterious(0.03) benign(0.126) TCGA-AC-A23H-01 20 42355074 42355074 C T GTSF1L Silent p.Q87Q 0.19 TCGA-AC-A23H-01 20 42695386 42695386 C G TOX2 Missense_Mutation p.S458C 0.15 deleterious(0.02) possibly_damaging(0.784) TCGA-AC-A23H-01 20 43034768 43034768 C G HNF4A Missense_Mutation p.I62M 0.16 deleterious(0) possibly_damaging(0.903) TCGA-AC-A23H-01 20 43138622 43138622 G A SERINC3 Nonsense_Mutation p.Q175* 0.24 TCGA-AC-A23H-01 20 43561819 43561819 G C PABPC1L Missense_Mutation p.Q479H 0.17 tolerated(0.1) possibly_damaging(0.823) TCGA-AC-A23H-01 20 43752809 43752809 C G WFDC12 Missense_Mutation p.R59S 0.10 deleterious(0.02) benign(0.365) TCGA-AC-A23H-01 20 44424004 44424004 G A DNTTIP1 Silent p.L98L 0.19 TCGA-AC-A23H-01 20 44430644 44430644 G A DNTTIP1 Missense_Mutation p.G169R 0.16 tolerated(0.05) benign(0.311) TCGA-AC-A23H-01 20 44430645 44430645 G A DNTTIP1 Missense_Mutation p.G169E 0.16 tolerated(0.06) benign(0.216) TCGA-AC-A23H-01 20 44433968 44433968 G C DNTTIP1 Missense_Mutation p.R229T 0.11 deleterious(0) possibly_damaging(0.888) TCGA-AC-A23H-01 20 44453025 44453025 C G TNNC2 Missense_Mutation p.E74Q 0.20 tolerated(0.15) possibly_damaging(0.576) TCGA-AC-A23H-01 20 44453441 44453441 G A TNNC2 Silent p.L12L 0.21 TCGA-AC-A23H-01 20 44519339 44519339 C A NEURL2 Nonsense_Mutation p.E98* 0.21 TCGA-AC-A23H-01 20 44520933 44520933 C T CTSA Silent p.L128L 0.69 TCGA-AC-A23H-01 20 44520956 44520956 G C CTSA Missense_Mutation p.W135C 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 20 44681593 44681593 C G SLC12A5 Intron 0.15 TCGA-AC-A23H-01 20 44979482 44979482 G A SLC35C2 Silent p.I295I 0.18 TCGA-AC-A23H-01 20 45004369 45004369 G C ELMO2 Missense_Mutation p.Q290E 0.19 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 20 45212237 45212237 G C SLC13A3 Missense_Mutation p.S398C 0.15 deleterious(0.03) probably_damaging(0.958) TCGA-AC-A23H-01 20 45212257 45212257 G A SLC13A3 Silent p.F391F 0.16 TCGA-AC-A23H-01 20 45865143 45865143 G A ZMYND8 Missense_Mutation p.S882L 0.13 tolerated(0.07) benign(0.054) TCGA-AC-A23H-01 20 45878112 45878112 G A ZMYND8 Missense_Mutation p.L565F 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AC-A23H-01 20 46255811 46255811 C T NCOA3 Silent p.V141V 0.13 TCGA-AC-A23H-01 20 46266471 46266471 C G NCOA3 Nonsense_Mutation p.S819* 0.16 TCGA-AC-A23H-01 20 46275974 46275974 C G NCOA3 Missense_Mutation p.S1137C 0.14 deleterious(0.01) possibly_damaging(0.88) TCGA-AC-A23H-01 20 46305869 46305869 C G SULF2 Missense_Mutation p.L401F 0.19 tolerated(0.21) benign(0.062) TCGA-AC-A23H-01 20 4680571 4680571 C T PRNP Silent p.F235F 0.30 TCGA-AC-A23H-01 20 47587774 47587774 C G ARFGEF2 Silent p.L436L 0.16 TCGA-AC-A23H-01 20 47633848 47633848 G T ARFGEF2 Nonsense_Mutation p.E1460* 0.13 TCGA-AC-A23H-01 20 4768401 4768401 C G RASSF2 Splice_Site p.X231_splice 0.11 TCGA-AC-A23H-01 20 47734461 47734461 C T STAU1 Missense_Mutation p.M454I 0.19 tolerated(0.15) benign(0.023) TCGA-AC-A23H-01 20 47842964 47842964 C G DDX27 Intron 0.19 TCGA-AC-A23H-01 20 47870299 47870299 G A ZNFX1 Silent p.V1003V 0.23 TCGA-AC-A23H-01 20 47887533 47887533 G A ZNFX1 Silent p.L272L 0.13 TCGA-AC-A23H-01 20 47990422 47990422 C T KCNB1 Missense_Mutation p.E559K 0.20 tolerated_low_confidence(0.15) possibly_damaging(0.755) TCGA-AC-A23H-01 20 48130909 48130909 G C PTGIS Missense_Mutation p.F293L 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 20 4839974 4839974 C A SLC23A2 Missense_Mutation p.G561W 0.11 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 20 4848459 4848459 G C SLC23A2 Missense_Mutation p.S438C 0.12 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 20 48523239 48523239 C G SPATA2 Missense_Mutation p.K160N 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-AC-A23H-01 20 4913169 4913169 C T SLC23A2 Missense_Mutation p.E14K 0.17 deleterious_low_confidence(0.02) benign(0.076) TCGA-AC-A23H-01 20 49509051 49509051 C T ADNP Missense_Mutation p.D734N 0.15 tolerated(0.36) benign(0.006) TCGA-AC-A23H-01 20 50221405 50221405 G C ATP9A Silent p.L986L 0.15 TCGA-AC-A23H-01 20 5100564 5100564 G C PCNA Intron 0.14 TCGA-AC-A23H-01 20 5157223 5157223 C G CDS2 Intron 0.16 TCGA-AC-A23H-01 20 52570099 52570099 C A BCAS1 Nonsense_Mutation p.E518* 0.16 TCGA-AC-A23H-01 20 52774034 52774034 C G CYP24A1 Missense_Mutation p.E443Q 0.13 tolerated(0.15) benign(0.071) TCGA-AC-A23H-01 20 53205257 53205257 C G DOK5 Silent p.L107L 0.19 TCGA-AC-A23H-01 20 53226984 53226984 C A DOK5 Silent p.I219I 0.16 TCGA-AC-A23H-01 20 54824026 54824026 G A MC3R Missense_Mutation p.E43K 0.19 deleterious(0.03) benign(0.23) TCGA-AC-A23H-01 20 54963243 54963243 G T AURKA Missense_Mutation p.S4Y 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.532) TCGA-AC-A23H-01 20 55026946 55026946 G C CASS4 Missense_Mutation p.Q238H 0.15 deleterious(0.01) possibly_damaging(0.897) TCGA-AC-A23H-01 20 55027880 55027880 G T CASS4 Missense_Mutation p.D550Y 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-AC-A23H-01 20 55072390 55072390 G A GCNT7 5'UTR 0.20 TCGA-AC-A23H-01 20 56073662 56073662 C G CTCFL Missense_Mutation p.E646Q 0.12 tolerated(0.06) benign(0.012) TCGA-AC-A23H-01 20 56099181 56099181 C T CTCFL Silent p.L27L 0.11 TCGA-AC-A23H-01 20 56138162 56138162 C G PCK1 Missense_Mutation p.S230C 0.12 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 20 56227057 56227057 G A PMEPA1 3'UTR 0.23 TCGA-AC-A23H-01 20 57016007 57016007 G C VAPB Missense_Mutation p.K147N 0.24 tolerated(0.08) probably_damaging(0.92) TCGA-AC-A23H-01 20 57429284 57429284 C G GNAS Missense_Mutation p.P322A 0.19 tolerated_low_confidence(0.08) unknown(0) TCGA-AC-A23H-01 20 57430168 57430168 C T GNAS Silent p.F616F 0.13 TCGA-AC-A23H-01 20 5753576 5753576 C G C20orf196 Nonsense_Mutation p.S22* 0.10 TCGA-AC-A23H-01 20 57569849 57569849 G A NELFCD 3'UTR 0.09 TCGA-AC-A23H-01 20 57570551 57570551 G T CTSZ 3'UTR 0.12 TCGA-AC-A23H-01 20 58348347 58348347 C G PHACTR3 Silent p.L255L 0.14 TCGA-AC-A23H-01 20 58441394 58441394 A C SYCP2 Missense_Mutation p.F1425C 0.12 deleterious(0) possibly_damaging(0.794) TCGA-AC-A23H-01 20 58574648 58574648 C G CDH26 Nonsense_Mutation p.S676* 0.14 TCGA-AC-A23H-01 20 58587861 58587861 C G CDH26 3'UTR 0.18 TCGA-AC-A23H-01 20 5903796 5903796 G A CHGB Missense_Mutation p.E336K 0.15 deleterious(0) probably_damaging(0.943) TCGA-AC-A23H-01 20 6031627 6031627 C G LRRN4 Missense_Mutation p.E220Q 0.23 tolerated(1) benign(0.015) TCGA-AC-A23H-01 20 60791707 60791707 G A HRH3 Silent p.L231L 0.25 TCGA-AC-A23H-01 20 60881304 60881304 C G ADRM1 Missense_Mutation p.L128V 0.20 deleterious(0) possibly_damaging(0.607) TCGA-AC-A23H-01 20 6093209 6093209 C G FERMT1 Missense_Mutation p.K149N 0.21 tolerated(0.22) probably_damaging(0.976) TCGA-AC-A23H-01 20 61386166 61386166 G A NTSR1 Missense_Mutation p.E282K 0.16 tolerated(0.28) benign(0.008) TCGA-AC-A23H-01 20 61524224 61524224 C T DIDO1 Silent p.Q1064Q 0.21 TCGA-AC-A23H-01 20 61525826 61525826 C G DIDO1 Missense_Mutation p.L837F 0.17 probably_damaging(0.999) TCGA-AC-A23H-01 20 61526228 61526228 C T DIDO1 Silent p.K790K 0.09 TCGA-AC-A23H-01 20 61526236 61526236 C T DIDO1 Missense_Mutation p.E788K 0.11 possibly_damaging(0.601) TCGA-AC-A23H-01 20 61526416 61526416 C T DIDO1 Silent p.E772E 0.17 TCGA-AC-A23H-01 20 61526418 61526418 C T DIDO1 Missense_Mutation p.E772K 0.17 probably_damaging(0.998) TCGA-AC-A23H-01 20 61526461 61526461 C T DIDO1 Silent p.L757L 0.17 TCGA-AC-A23H-01 20 61542181 61542181 C T DIDO1 Missense_Mutation p.E262K 0.12 benign(0.439) TCGA-AC-A23H-01 20 61845273 61845273 C G YTHDF1 Missense_Mutation p.Q25H 0.12 deleterious(0.03) probably_damaging(0.984) TCGA-AC-A23H-01 20 61909529 61909529 G T ARFGAP1 Silent p.L168L 0.12 TCGA-AC-A23H-01 20 62070008 62070008 C G KCNQ2 Missense_Mutation p.K331N 0.14 deleterious(0) probably_damaging(0.91) TCGA-AC-A23H-01 20 62129087 62129087 G C EEF1A2 Missense_Mutation p.I10M 0.13 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-AC-A23H-01 20 62193004 62193004 C G HELZ2 Missense_Mutation p.R2262S 0.30 tolerated(0.08) benign(0.093) TCGA-AC-A23H-01 20 62197421 62197421 G C HELZ2 Silent p.L918L 0.33 TCGA-AC-A23H-01 20 62374329 62374329 C G SLC2A4RG Missense_Mutation p.R384G 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 20 62407185 62407185 C T ZBTB46 Silent p.E356E 0.22 TCGA-AC-A23H-01 20 62853303 62853303 G A MYT1 Missense_Mutation p.E767K 0.35 probably_damaging(0.999) TCGA-AC-A23H-01 20 7990954 7990954 G A TMX4 Missense_Mutation p.P62L 0.16 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 20 8703027 8703027 G A PLCB1 Missense_Mutation p.D514N 0.20 tolerated(0.82) benign(0.028) TCGA-AC-A23H-01 20 8703030 8703030 G A PLCB1 Missense_Mutation p.D515N 0.23 tolerated(0.4) benign(0.047) TCGA-AC-A23H-01 20 8737717 8737717 G A PLCB1 Missense_Mutation p.E850K 0.20 tolerated(0.33) benign(0.017) TCGA-AC-A23H-01 20 9352991 9352991 C G PLCB4 Missense_Mutation p.F209L 0.20 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 20 9400470 9400470 G C PLCB4 Missense_Mutation p.D678H 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 21 10914413 10914413 C T TPTE Missense_Mutation p.E436K 0.24 deleterious(0.02) benign(0.017) TCGA-AC-A23H-01 21 15588559 15588559 G C RBM11 Missense_Mutation p.E18Q 0.20 deleterious(0.05) probably_damaging(0.911) TCGA-AC-A23H-01 21 27394168 27394168 C G APP Missense_Mutation p.E285Q 0.26 tolerated(0.17) unknown(0) TCGA-AC-A23H-01 21 30308922 30308922 G A LTN1 Missense_Mutation p.A1573V 0.44 tolerated(0.09) benign(0.003) TCGA-AC-A23H-01 21 30339091 30339091 G C LTN1 Silent p.L620L 0.48 TCGA-AC-A23H-01 21 30365115 30365115 C T LTN1 Silent p.K50K 0.28 TCGA-AC-A23H-01 21 30434565 30434565 C G CCT8 Splice_Site p.X366_splice 0.24 TCGA-AC-A23H-01 21 31015152 31015152 G A GRIK1 Silent p.I364I 0.24 TCGA-AC-A23H-01 21 31587872 31587872 G A CLDN8 Silent p.I124I 0.49 TCGA-AC-A23H-01 21 31588139 31588139 G A CLDN8 Silent p.F35F 0.14 TCGA-AC-A23H-01 21 31769041 31769041 C T KRTAP13-1 3'UTR 0.58 TCGA-AC-A23H-01 21 32185243 32185243 G A KRTAP8-1 3'UTR 0.16 TCGA-AC-A23H-01 21 33368178 33368178 C G HUNK Nonsense_Mutation p.S468* 0.22 TCGA-AC-A23H-01 21 33684187 33684187 C T MRAP Silent p.L133L 0.14 TCGA-AC-A23H-01 21 33765732 33765732 G A C21orf119 3'UTR 0.17 TCGA-AC-A23H-01 21 33949139 33949139 C G TCP10L Missense_Mutation p.R198T 0.17 tolerated(0.29) benign(0.085) TCGA-AC-A23H-01 21 34923720 34923720 C A SON Missense_Mutation p.S728Y 0.19 possibly_damaging(0.608) TCGA-AC-A23H-01 21 35154375 35154375 G A ITSN1 Missense_Mutation p.E588K 0.22 tolerated(0.45) benign(0.277) TCGA-AC-A23H-01 21 36081683 36081683 G A CLIC6 Silent p.L582L 0.27 TCGA-AC-A23H-01 21 37747696 37747696 G A MORC3 3'UTR 0.26 TCGA-AC-A23H-01 21 38095422 38095422 C T SIM2 Silent p.S178S 0.23 TCGA-AC-A23H-01 21 38467718 38467718 C G TTC3 Missense_Mutation p.I252M 0.18 tolerated(0.37) benign(0.403) TCGA-AC-A23H-01 21 38511012 38511012 G T TTC3 Nonsense_Mutation p.E553* 0.51 TCGA-AC-A23H-01 21 38522414 38522414 G A TTC3 Missense_Mutation p.E719K 0.22 tolerated(0.42) benign(0.005) TCGA-AC-A23H-01 21 38610902 38610902 C G DSCR3 Missense_Mutation p.Q70H 0.52 deleterious(0.01) probably_damaging(0.948) TCGA-AC-A23H-01 21 38878481 38878481 C A DYRK1A Missense_Mutation p.F542L 0.25 tolerated(0.05) benign(0.002) TCGA-AC-A23H-01 21 39672032 39672032 C G KCNJ15 Silent p.L283L 0.22 TCGA-AC-A23H-01 21 40590533 40590533 C G BRWD1 Missense_Mutation p.E1146Q 0.24 tolerated(0.21) probably_damaging(0.986) TCGA-AC-A23H-01 21 40823900 40823900 G A SH3BGR Missense_Mutation p.D23N 0.20 tolerated_low_confidence(0.1) benign(0.002) TCGA-AC-A23H-01 21 42780062 42780062 G A MX2 Missense_Mutation p.E684K 0.16 deleterious(0.01) benign(0.339) TCGA-AC-A23H-01 21 43691253 43691253 C T ABCG1 Silent p.S120S 0.26 TCGA-AC-A23H-01 21 44329158 44329158 C T NDUFV3 3'UTR 0.20 TCGA-AC-A23H-01 21 44485530 44485530 C T CBS Silent p.K211K 0.48 TCGA-AC-A23H-01 21 44840966 44840966 G A SIK1 Silent p.F224F 0.42 TCGA-AC-A23H-01 21 45033732 45033732 C G HSF2BP Missense_Mutation p.G224A 0.20 tolerated(0.07) benign(0.283) TCGA-AC-A23H-01 21 45743708 45743708 C T PFKL Silent p.I519I 0.25 TCGA-AC-A23H-01 21 46078225 46078225 C T KRTAP12-3 3'UTR 0.46 TCGA-AC-A23H-01 21 46271311 46271311 G T PTTG1IP 3'UTR 0.20 TCGA-AC-A23H-01 21 46686137 46686137 C T POFUT2 Intron 0.23 TCGA-AC-A23H-01 21 46888313 46888313 C G COL18A1 Missense_Mutation p.F268L 0.18 unknown(0) TCGA-AC-A23H-01 21 47545703 47545703 G A COL6A2 Silent p.T658T 0.50 TCGA-AC-A23H-01 21 47635660 47635660 C T LSS Silent p.R277R 0.33 TCGA-AC-A23H-01 21 47664968 47664968 C T MCM3AP Silent p.L1597L 0.17 TCGA-AC-A23H-01 21 47703716 47703716 C T MCM3AP Missense_Mutation p.R419K 0.44 tolerated(0.08) benign(0.015) TCGA-AC-A23H-01 21 47735446 47735446 G A C21orf58 Missense_Mutation p.P129L 0.23 tolerated(0.3) benign(0.007) TCGA-AC-A23H-01 21 47754670 47754670 G C PCNT Silent p.G209G 0.24 TCGA-AC-A23H-01 22 16267011 16267011 C T POTEH Missense_Mutation p.D480N 0.13 tolerated(0.05) possibly_damaging(0.905) TCGA-AC-A23H-01 22 16275249 16275249 C T POTEH Missense_Mutation p.E399K 0.47 tolerated(0.07) possibly_damaging(0.867) TCGA-AC-A23H-01 22 17443506 17443506 G C GAB4 3'UTR 0.23 TCGA-AC-A23H-01 22 17451047 17451047 G A GAB4 Silent p.F241F 0.12 TCGA-AC-A23H-01 22 18138517 18138517 G A BCL2L13 Missense_Mutation p.E14K 0.14 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 22 18209923 18209923 G C BCL2L13 Missense_Mutation p.D361H 0.11 tolerated_low_confidence(0.12) benign(0.01) TCGA-AC-A23H-01 22 18653579 18653579 C G USP18 Missense_Mutation p.I261M 0.17 tolerated(0.14) possibly_damaging(0.82) TCGA-AC-A23H-01 22 18844762 18844762 C T BCRP7 Intron 0.10 TCGA-AC-A23H-01 22 18844936 18844936 C T BCRP7 RNA 0.08 TCGA-AC-A23H-01 22 18908915 18908915 C T PRODH Nonsense_Mutation p.W317* 0.33 TCGA-AC-A23H-01 22 19028679 19028679 G C DGCR2 Missense_Mutation p.P430A 0.23 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 22 19163466 19163466 C T SLC25A1 3'UTR 0.55 TCGA-AC-A23H-01 22 19794230 19794230 C A GNB1L Silent p.P156P 0.24 TCGA-AC-A23H-01 22 19808817 19808817 G A GNB1L Missense_Mutation p.S21L 0.29 deleterious(0.02) possibly_damaging(0.833) TCGA-AC-A23H-01 22 19960535 19960535 C T ARVCF Silent p.A821A 0.32 TCGA-AC-A23H-01 22 19961757 19961757 C G ARVCF Missense_Mutation p.E656Q 0.18 tolerated(0.17) probably_damaging(0.993) TCGA-AC-A23H-01 22 20103649 20103649 C A TRMT2A Missense_Mutation p.V171L 0.22 deleterious(0.02) possibly_damaging(0.509) TCGA-AC-A23H-01 22 20131169 20131169 C T ZDHHC8 Silent p.G672G 0.38 TCGA-AC-A23H-01 22 20229579 20229579 C G RTN4R Silent p.L359L 0.21 TCGA-AC-A23H-01 22 20783592 20783592 C T SCARF2 Missense_Mutation p.R492Q 0.16 tolerated(0.33) probably_damaging(0.951) TCGA-AC-A23H-01 22 21081626 21081626 G C PI4KA Missense_Mutation p.C1611W 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-AC-A23H-01 22 21152967 21152967 G T PI4KA Silent p.I671I 0.11 TCGA-AC-A23H-01 22 21349235 21349235 C T LZTR1 Missense_Mutation p.S621F 0.29 deleterious(0.03) possibly_damaging(0.805) TCGA-AC-A23H-01 22 21363380 21363380 C A AC002472.1 5'Flank 0.31 TCGA-AC-A23H-01 22 21363710 21363710 G A AC002472.1 5'Flank 0.17 TCGA-AC-A23H-01 22 21989373 21989373 G C CCDC116 Missense_Mutation p.E341Q 0.36 tolerated(0.22) benign(0.085) TCGA-AC-A23H-01 22 22051074 22051074 C G PPIL2 Intron 0.31 TCGA-AC-A23H-01 22 22051296 22051296 C T PPIL2 3'UTR 0.16 TCGA-AC-A23H-01 22 22516845 22516845 C G IGLV4-60 Missense_Mutation p.L45V 0.19 deleterious(0.02) possibly_damaging(0.774) TCGA-AC-A23H-01 22 22707571 22707571 G C IGLV5-48 Missense_Mutation p.R53S 0.28 tolerated(0.63) benign(0.002) TCGA-AC-A23H-01 22 22869163 22869163 G T ZNF280A Silent p.T264T 0.27 TCGA-AC-A23H-01 22 22899384 22899384 G A PRAME 5'UTR 0.27 TCGA-AC-A23H-01 22 23063433 23063433 G A IGLV3-19 Missense_Mutation p.R47K 0.38 tolerated(0.15) benign(0.011) TCGA-AC-A23H-01 22 23235904 23235904 G C IGLL5 Missense_Mutation p.Q77H 0.26 tolerated_low_confidence(0.51) possibly_damaging(0.641) TCGA-AC-A23H-01 22 23406223 23406223 G A RTDR1 Silent p.F170F 0.09 TCGA-AC-A23H-01 22 23501136 23501136 C G RAB36 Missense_Mutation p.I232M 0.23 deleterious(0.02) benign(0.297) TCGA-AC-A23H-01 22 23503088 23503088 C A RAB36 Missense_Mutation p.F280L 0.33 deleterious(0.03) probably_damaging(0.94) TCGA-AC-A23H-01 22 24086937 24086937 G A ZNF70 Missense_Mutation p.H131Y 0.15 deleterious(0.02) benign(0.053) TCGA-AC-A23H-01 22 24458432 24458432 C T CABIN1 Missense_Mutation p.S547F 0.29 tolerated(0.07) possibly_damaging(0.851) TCGA-AC-A23H-01 22 24563177 24563177 C T CABIN1 Silent p.L1860L 0.54 TCGA-AC-A23H-01 22 24583394 24583394 G C SUSD2 Missense_Mutation p.E623Q 0.31 tolerated(0.68) benign(0.019) TCGA-AC-A23H-01 22 24629553 24629553 C G GGT5 Missense_Mutation p.E105Q 0.24 deleterious(0.03) probably_damaging(0.925) TCGA-AC-A23H-01 22 25243714 25243714 G T SGSM1 Nonsense_Mutation p.E85* 0.19 TCGA-AC-A23H-01 22 25250979 25250979 G A SGSM1 Missense_Mutation p.E158K 0.51 deleterious(0) possibly_damaging(0.639) TCGA-AC-A23H-01 22 25313624 25313624 G C SGSM1 Splice_Site p.X1032_splice 0.17 TCGA-AC-A23H-01 22 26168458 26168458 C T MYO18B Missense_Mutation p.S617L 0.16 tolerated(0.67) benign(0.005) TCGA-AC-A23H-01 22 26689006 26689006 G T SEZ6L Missense_Mutation p.M243I 0.31 tolerated(0.23) benign(0.017) TCGA-AC-A23H-01 22 26890795 26890795 G C TFIP11 Missense_Mutation p.L654V 0.27 deleterious(0) probably_damaging(0.959) TCGA-AC-A23H-01 22 26895343 26895343 G A TFIP11 Silent p.L352L 0.25 TCGA-AC-A23H-01 22 27012277 27012277 G A CRYBB1 Nonsense_Mutation p.Q3* 0.22 TCGA-AC-A23H-01 22 28379611 28379611 C T TTC28 Missense_Mutation p.G2015E 0.35 tolerated_low_confidence(0.92) benign(0.034) TCGA-AC-A23H-01 22 28385929 28385929 G C TTC28 Missense_Mutation p.Q1882E 0.12 tolerated(0.57) benign(0.066) TCGA-AC-A23H-01 22 28410294 28410294 G A TTC28 Missense_Mutation p.S1387L 0.14 tolerated(0.14) benign(0.005) TCGA-AC-A23H-01 22 28501412 28501412 C G TTC28 Missense_Mutation p.E1054D 0.28 tolerated(0.14) probably_damaging(0.999) TCGA-AC-A23H-01 22 29091771 29091771 G C CHEK2 Missense_Mutation p.L439V 0.33 deleterious(0.01) benign(0.211) TCGA-AC-A23H-01 22 29138168 29138168 G A HSCB Missense_Mutation p.D29N 0.26 tolerated(1) benign(0) TCGA-AC-A23H-01 22 29192099 29192099 G A XBP1 Nonsense_Mutation p.Q179* 0.12 TCGA-AC-A23H-01 22 29192117 29192117 G C XBP1 Missense_Mutation p.L173V 0.17 tolerated(0.14) probably_damaging(0.952) TCGA-AC-A23H-01 22 29193155 29193155 C G XBP1 Missense_Mutation p.E121D 0.20 tolerated(0.07) probably_damaging(0.992) TCGA-AC-A23H-01 22 29195100 29195100 C G XBP1 Missense_Mutation p.R90P 0.25 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 22 29695604 29695604 G C EWSR1 Missense_Mutation p.R570T 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-AC-A23H-01 22 29834683 29834683 C A RFPL1 5'UTR 0.15 TCGA-AC-A23H-01 22 29956727 29956727 G C NIPSNAP1 Silent p.L234L 0.68 TCGA-AC-A23H-01 22 30514992 30514992 C T HORMAD2 Silent p.F122F 0.10 TCGA-AC-A23H-01 22 30690782 30690782 C T TBC1D10A Intron 0.27 TCGA-AC-A23H-01 22 30866196 30866196 C T SEC14L3 Intron 0.14 TCGA-AC-A23H-01 22 30890862 30890862 G A SEC14L4 Silent p.V170V 0.17 TCGA-AC-A23H-01 22 30975275 30975275 G A PES1 Missense_Mutation p.S457L 0.30 tolerated(0.23) benign(0.003) TCGA-AC-A23H-01 22 31059454 31059454 C G DUSP18 Missense_Mutation p.E179D 0.23 tolerated(0.07) benign(0.077) TCGA-AC-A23H-01 22 31338156 31338156 G C MORC2 Missense_Mutation p.P115A 0.11 deleterious(0) probably_damaging(0.927) TCGA-AC-A23H-01 22 31485898 31485898 G A SMTN Missense_Mutation p.E229K 0.16 tolerated(0.18) benign(0.02) TCGA-AC-A23H-01 22 31662065 31662065 G A LIMK2 Missense_Mutation p.D309N 0.31 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 22 31838963 31838963 G C EIF4ENIF1 Missense_Mutation p.Q731E 0.26 tolerated(0.67) benign(0.014) TCGA-AC-A23H-01 22 31859053 31859053 C T EIF4ENIF1 Missense_Mutation p.E218K 0.30 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 22 32021826 32021826 G A PISD 5'UTR 0.10 TCGA-AC-A23H-01 22 32108527 32108527 G A PRR14L Silent p.F1766F 0.10 TCGA-AC-A23H-01 22 32229987 32229987 G A DEPDC5 Intron 0.08 TCGA-AC-A23H-01 22 32792130 32792130 C G RTCB Silent p.L307L 0.09 TCGA-AC-A23H-01 22 35463228 35463228 G C ISX Missense_Mutation p.E50Q 0.63 tolerated(0.34) benign(0.025) TCGA-AC-A23H-01 22 36623807 36623807 C G APOL2 Silent p.G219G 0.12 TCGA-AC-A23H-01 22 36624167 36624167 G A APOL2 Silent p.L99L 0.24 TCGA-AC-A23H-01 22 36691695 36691695 G C MYH9 Missense_Mutation p.S1114C 0.31 possibly_damaging(0.759) TCGA-AC-A23H-01 22 36902266 36902266 G C FOXRED2 Missense_Mutation p.F68L 0.16 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 22 37213029 37213029 C G PVALB Silent p.L7L 0.19 TCGA-AC-A23H-01 22 37272009 37272009 C A NCF4 Missense_Mutation p.F314L 0.25 deleterious_low_confidence(0) benign(0.153) TCGA-AC-A23H-01 22 37603510 37603510 G A SSTR3 Silent p.F111F 0.37 TCGA-AC-A23H-01 22 37690715 37690715 G A CYTH4 Silent p.E39E 0.13 TCGA-AC-A23H-01 22 38121705 38121705 G C TRIOBP Missense_Mutation p.E1048Q 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A23H-01 22 38131246 38131246 G T TRIOBP Nonsense_Mutation p.E1635* 0.14 TCGA-AC-A23H-01 22 38131260 38131260 C T TRIOBP Silent p.V1639V 0.31 TCGA-AC-A23H-01 22 38247340 38247340 C G EIF3L Missense_Mutation p.Q46E 0.14 tolerated(0.87) benign(0.028) TCGA-AC-A23H-01 22 38259032 38259032 C T EIF3L Silent p.F164F 0.28 TCGA-AC-A23H-01 22 38461060 38461060 G A PICK1 Missense_Mutation p.E69K 0.31 deleterious(0) possibly_damaging(0.895) TCGA-AC-A23H-01 22 38505152 38505152 G A BAIAP2L2 Missense_Mutation p.R39C 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 22 38541536 38541536 C T PLA2G6 Missense_Mutation p.D112N 0.28 deleterious(0) probably_damaging(0.974) TCGA-AC-A23H-01 22 38948683 38948683 G A DMC1 Missense_Mutation p.H137Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 22 39428252 39428252 C T APOBEC3D Silent p.F364F 0.23 TCGA-AC-A23H-01 22 39883502 39883502 C G MGAT3 Missense_Mutation p.F50L 0.26 tolerated_low_confidence(0.45) benign(0.004) TCGA-AC-A23H-01 22 39884611 39884611 C A MGAT3 Missense_Mutation p.S420Y 0.31 deleterious(0) probably_damaging(0.936) TCGA-AC-A23H-01 22 40139768 40139768 C T ENTHD1 Silent p.L580L 0.15 TCGA-AC-A23H-01 22 40351888 40351888 G C GRAP2 Missense_Mutation p.K48N 0.30 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 22 40677266 40677266 C G TNRC6B Silent p.L1185L 0.15 TCGA-AC-A23H-01 22 40801715 40801715 C T SGSM3 Silent p.I227I 0.17 TCGA-AC-A23H-01 22 40802612 40802612 C A SGSM3 Silent p.L377L 0.39 TCGA-AC-A23H-01 22 41609870 41609870 G A L3MBTL2 Intron 0.36 TCGA-AC-A23H-01 22 41621039 41621039 G A L3MBTL2 Silent p.L440L 0.31 TCGA-AC-A23H-01 22 41752409 41752409 G A ZC3H7B Missense_Mutation p.E816K 0.29 deleterious(0.03) benign(0.073) TCGA-AC-A23H-01 22 41833044 41833044 C T TOB2 Silent p.Q102Q 0.22 TCGA-AC-A23H-01 22 42128505 42128505 C A MEI1 Nonsense_Mutation p.S410* 0.15 TCGA-AC-A23H-01 22 42195424 42195424 G A MEI1 3'UTR 0.20 TCGA-AC-A23H-01 22 42342554 42342554 G A CENPM Intron 0.58 TCGA-AC-A23H-01 22 42392933 42392933 C T SEPT3 Missense_Mutation p.P347S 0.12 tolerated_low_confidence(0.48) possibly_damaging(0.857) TCGA-AC-A23H-01 22 42393087 42393087 C T SEPT3 3'UTR 0.27 TCGA-AC-A23H-01 22 42523970 42523970 C T CYP2D6 Missense_Mutation p.E287K 0.32 tolerated(0.13) benign(0.014) TCGA-AC-A23H-01 22 42906697 42906697 C T RRP7A 3'UTR 0.18 TCGA-AC-A23H-01 22 43619223 43619223 C G SCUBE1 Splice_Site p.X403_splice 0.33 TCGA-AC-A23H-01 22 45809746 45809746 C G RIBC2 5'UTR 0.23 TCGA-AC-A23H-01 22 46628068 46628068 A C PPARA Missense_Mutation p.K364T 0.12 deleterious(0) probably_damaging(0.955) TCGA-AC-A23H-01 22 46652367 46652367 G A PKDREJ 3'UTR 0.14 TCGA-AC-A23H-01 22 46654366 46654366 G A PKDREJ Silent p.F1618F 0.38 TCGA-AC-A23H-01 22 46655190 46655190 G A PKDREJ Missense_Mutation p.H1344Y 0.19 tolerated(1) benign(0.014) TCGA-AC-A23H-01 22 46685410 46685410 C T TTC38 Silent p.L398L 0.58 TCGA-AC-A23H-01 22 46930596 46930596 G A CELSR1 Silent p.I824I 0.11 TCGA-AC-A23H-01 22 47057285 47057285 G C GRAMD4 Missense_Mutation p.E138Q 0.12 tolerated(0.1) possibly_damaging(0.501) TCGA-AC-A23H-01 22 47085891 47085891 G A CERK Silent p.V513V 0.42 TCGA-AC-A23H-01 22 47103750 47103750 G A CERK Silent p.I235I 0.21 TCGA-AC-A23H-01 22 49145790 49145790 C T FAM19A5 3'UTR 0.59 TCGA-AC-A23H-01 22 50277793 50277793 G A ZBED4 Silent p.V161V 0.26 TCGA-AC-A23H-01 22 50277907 50277907 C T ZBED4 Silent p.L199L 0.38 TCGA-AC-A23H-01 22 50278050 50278050 G C ZBED4 Missense_Mutation p.R247T 0.36 deleterious(0.02) benign(0.159) TCGA-AC-A23H-01 22 50321069 50321069 C T CRELD2 3'UTR 0.19 TCGA-AC-A23H-01 22 50616035 50616035 G A PANX2 Silent p.L298L 0.25 TCGA-AC-A23H-01 22 50718989 50718989 G T PLXNB2 Silent p.I1368I 0.29 TCGA-AC-A23H-01 22 50720621 50720621 G A PLXNB2 Missense_Mutation p.P1037S 0.43 tolerated(0.39) benign(0.003) TCGA-AC-A23H-01 22 50750613 50750613 G A DENND6B Silent p.I571I 0.25 TCGA-AC-A23H-01 22 50885852 50885852 C A SBF1 Nonsense_Mutation p.E1828* 0.23 TCGA-AC-A23H-01 22 50904848 50904848 G T SBF1 Missense_Mutation p.S240Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 22 50960202 50960202 G A NCAPH2 Missense_Mutation p.E345K 0.34 tolerated(0.13) probably_damaging(0.918) TCGA-AC-A23H-01 22 50967028 50967028 G A TYMP Silent p.I143I 0.33 TCGA-AC-A23H-01 22 50986767 50986767 G A KLHDC7B Missense_Mutation p.E58K 0.22 tolerated_low_confidence(0.08) benign(0.012) TCGA-AC-A23H-01 22 51160355 51160355 C G SHANK3 Missense_Mutation p.S1381C 0.40 probably_damaging(0.997) TCGA-AC-A23H-01 2 100015796 100015796 C G EIF5B Silent p.L1194L 0.17 TCGA-AC-A23H-01 2 101188200 101188200 G C PDCL3 Missense_Mutation p.D173H 0.17 deleterious(0.03) benign(0.11) TCGA-AC-A23H-01 2 101655055 101655055 G C TBC1D8 Missense_Mutation p.I366M 0.18 deleterious(0.03) benign(0.081) TCGA-AC-A23H-01 2 101881387 101881387 G A CNOT11 Missense_Mutation p.E305K 0.22 tolerated(0.07) probably_damaging(0.971) TCGA-AC-A23H-01 2 101911596 101911596 C G RNF149 Missense_Mutation p.E170Q 0.18 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 2 102505374 102505374 T C MAP4K4 Missense_Mutation p.F1205L 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AC-A23H-01 2 10262877 10262877 C G RRM2 Silent p.V44V 0.33 TCGA-AC-A23H-01 2 102959932 102959932 G A IL1RL1 Intron 0.21 TCGA-AC-A23H-01 2 103431452 103431452 C G TMEM182 3'UTR 0.22 TCGA-AC-A23H-01 2 10350459 10350459 C A C2orf48 Missense_Mutation p.F72L 0.15 deleterious_low_confidence(0) benign(0.294) TCGA-AC-A23H-01 2 10563154 10563154 G A HPCAL1 Missense_Mutation p.E142K 0.24 deleterious(0.01) benign(0.08) TCGA-AC-A23H-01 2 105956116 105956116 C G C2orf49 Missense_Mutation p.P59R 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 105990173 105990173 G C FHL2 Missense_Mutation p.D58E 0.22 tolerated(0.19) benign(0.026) TCGA-AC-A23H-01 2 107041450 107041450 G T RGPD3 Silent p.L991L 0.15 TCGA-AC-A23H-01 2 108487503 108487503 G T RGPD4 Missense_Mutation p.A1015S 0.15 tolerated(0.26) benign(0.223) TCGA-AC-A23H-01 2 108488586 108488586 G C RGPD4 Missense_Mutation p.E1376Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 2 109087897 109087897 G C GCC2 Missense_Mutation p.L704F 0.18 deleterious(0.01) possibly_damaging(0.578) TCGA-AC-A23H-01 2 109368406 109368406 C T RANBP2 Nonsense_Mutation p.Q571* 0.15 TCGA-AC-A23H-01 2 109380363 109380363 C G RANBP2 Missense_Mutation p.S1123C 0.33 tolerated(0.18) benign(0.425) TCGA-AC-A23H-01 2 109384012 109384012 C G RANBP2 Silent p.L2339L 0.15 TCGA-AC-A23H-01 2 110303650 110303650 C T SEPT10 Silent p.L442L 0.18 TCGA-AC-A23H-01 2 111886327 111886327 G T BCL2L11 Intron 0.19 TCGA-AC-A23H-01 2 111921718 111921718 G A BCL2L11 Silent p.L169L 0.14 TCGA-AC-A23H-01 2 112625630 112625630 C T ANAPC1 Missense_Mutation p.E219K 0.17 deleterious(0.01) probably_damaging(0.929) TCGA-AC-A23H-01 2 112631202 112631202 C G ANAPC1 Missense_Mutation p.E139Q 0.22 tolerated(0.29) benign(0.031) TCGA-AC-A23H-01 2 112779916 112779916 G C MERTK Missense_Mutation p.D811H 0.20 deleterious(0) probably_damaging(0.968) TCGA-AC-A23H-01 2 113067621 113067621 G C ZC3H6 Missense_Mutation p.D166H 0.13 deleterious(0.04) benign(0.398) TCGA-AC-A23H-01 2 113317069 113317069 G A POLR1B Silent p.L510L 0.18 TCGA-AC-A23H-01 2 11332423 11332423 C T ROCK2 Silent p.Q1338Q 0.22 TCGA-AC-A23H-01 2 113817024 113817024 G C IL36RN Silent p.L3L 0.37 TCGA-AC-A23H-01 2 113940867 113940867 G A PSD4 Silent p.R278R 0.24 TCGA-AC-A23H-01 2 114257232 114257232 C T FOXD4L1 Silent p.I133I 0.36 TCGA-AC-A23H-01 2 114691862 114691862 C G ACTR3 Missense_Mutation p.L147V 0.11 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 2 114699760 114699760 C T ACTR3 Intron 0.10 TCGA-AC-A23H-01 2 116503733 116503733 C T DPP10 Silent p.L312L 0.20 TCGA-AC-A23H-01 2 11718469 11718469 C G GREB1 Silent p.L228L 0.46 TCGA-AC-A23H-01 2 118677811 118677811 C T CCDC93 3'UTR 0.19 TCGA-AC-A23H-01 2 120677737 120677737 C G PTPN4 Missense_Mutation p.F307L 0.24 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 2 121748027 121748027 G A GLI2 Missense_Mutation p.D1513N 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-AC-A23H-01 2 122004538 122004538 G A TFCP2L1 Silent p.C171C 0.44 TCGA-AC-A23H-01 2 122260751 122260751 G C CLASP1 Missense_Mutation p.S235C 0.19 deleterious(0) benign(0.443) TCGA-AC-A23H-01 2 125320851 125320851 C G CNTNAP5 Missense_Mutation p.F568L 0.14 deleterious(0.01) probably_damaging(0.935) TCGA-AC-A23H-01 2 125405445 125405445 G A CNTNAP5 Missense_Mutation p.E662K 0.39 deleterious(0.02) benign(0.371) TCGA-AC-A23H-01 2 125555851 125555851 C T CNTNAP5 Silent p.I1056I 0.14 TCGA-AC-A23H-01 2 127816681 127816681 G C BIN1 Missense_Mutation p.S303C 0.18 deleterious(0.04) possibly_damaging(0.572) TCGA-AC-A23H-01 2 128066245 128066245 C A MAP3K2 Missense_Mutation p.G517V 0.23 deleterious(0) possibly_damaging(0.876) TCGA-AC-A23H-01 2 128075243 128075243 C - MAP3K2 Frame_Shift_Del p.E430Kfs*20 0.11 TCGA-AC-A23H-01 2 128317309 128317309 C T MYO7B Silent p.F4F 0.18 TCGA-AC-A23H-01 2 128347711 128347711 C T MYO7B Silent p.F633F 0.19 TCGA-AC-A23H-01 2 128471323 128471323 C T WDR33 Missense_Mutation p.G1048R 0.16 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-AC-A23H-01 2 128477068 128477068 G C WDR33 Nonsense_Mutation p.S844* 0.13 TCGA-AC-A23H-01 2 128944323 128944323 G C UGGT1 Missense_Mutation p.E1476Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A23H-01 2 128947305 128947305 G A UGGT1 Missense_Mutation p.E1553K 0.22 tolerated(0.07) benign(0.009) TCGA-AC-A23H-01 2 130897593 130897593 C T CCDC74B Intron 0.20 TCGA-AC-A23H-01 2 130910712 130910712 C G SMPD4 Missense_Mutation p.E725D 0.21 tolerated(0.4) benign(0.099) TCGA-AC-A23H-01 2 131104083 131104083 G C IMP4 3'UTR 0.13 TCGA-AC-A23H-01 2 131519657 131519657 G C AMER3 Missense_Mutation p.K4N 0.20 deleterious(0) possibly_damaging(0.859) TCGA-AC-A23H-01 2 131522018 131522018 G A AMER3 Silent p.L791L 0.19 TCGA-AC-A23H-01 2 131797858 131797858 C T ARHGEF4 Missense_Mutation p.R317C 0.19 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 2 131883450 131883450 C G PLEKHB2 Missense_Mutation p.I54M 0.13 deleterious(0.03) possibly_damaging(0.904) TCGA-AC-A23H-01 2 132054540 132054540 C T CYP4F31P 3'Flank 0.22 TCGA-AC-A23H-01 2 135102603 135102603 G C MGAT5 Missense_Mutation p.K360N 0.19 tolerated(0.06) possibly_damaging(0.547) TCGA-AC-A23H-01 2 135705412 135705412 G A CCNT2 Missense_Mutation p.D216N 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-AC-A23H-01 2 135712165 135712165 G C CCNT2 Missense_Mutation p.D714H 0.29 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 2 135870805 135870805 G A RAB3GAP1 Silent p.L149L 0.19 TCGA-AC-A23H-01 2 135911344 135911344 G A RAB3GAP1 Missense_Mutation p.M729I 0.17 deleterious(0.02) possibly_damaging(0.892) TCGA-AC-A23H-01 2 136547151 136547151 G A LCT Silent p.L1851L 0.18 TCGA-AC-A23H-01 2 136873300 136873300 C T CXCR4 Silent p.Q70Q 0.22 TCGA-AC-A23H-01 2 137814778 137814778 G T THSD7B Missense_Mutation p.D310Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 138722051 138722051 G A HNMT 5'UTR 0.15 TCGA-AC-A23H-01 2 139308479 139308479 G T SPOPL Silent p.L69L 0.14 TCGA-AC-A23H-01 2 141072604 141072604 C G LRP1B Missense_Mutation p.L4235F 0.18 possibly_damaging(0.587) TCGA-AC-A23H-01 2 149243349 149243349 C T MBD5 Nonsense_Mutation p.Q962* 0.13 TCGA-AC-A23H-01 2 1497795 1497795 C G TPO Missense_Mutation p.L664V 0.16 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 2 149851025 149851025 G A KIF5C Missense_Mutation p.E666K 0.26 deleterious(0.04) possibly_damaging(0.887) TCGA-AC-A23H-01 2 149857021 149857021 G A KIF5C Missense_Mutation p.M765I 0.22 tolerated(0.21) benign(0) TCGA-AC-A23H-01 2 151331453 151331453 G A RND3 Missense_Mutation p.S95L 0.21 deleterious(0.04) possibly_damaging(0.533) TCGA-AC-A23H-01 2 152139444 152139444 C T NMI Missense_Mutation p.D7N 0.39 tolerated(1) benign(0) TCGA-AC-A23H-01 2 152214105 152214105 C T TNFAIP6 5'Flank 0.23 TCGA-AC-A23H-01 2 152230076 152230076 G A TNFAIP6 Missense_Mutation p.E213K 0.20 tolerated(0.22) benign(0.004) TCGA-AC-A23H-01 2 152319552 152319553 - A RIF1 Frame_Shift_Ins p.A1176Sfs*11 0.20 TCGA-AC-A23H-01 2 152346948 152346948 G A NEB Missense_Mutation p.S8412L 0.09 benign(0.003) TCGA-AC-A23H-01 2 152352817 152352817 G C NEB Silent p.V8153V 0.16 TCGA-AC-A23H-01 2 152402958 152402958 C T NEB Splice_Site p.X6790_splice 0.14 TCGA-AC-A23H-01 2 152467319 152467319 G T NEB Missense_Mutation p.P3956Q 0.29 probably_damaging(0.994) TCGA-AC-A23H-01 2 152531842 152531842 G C NEB Missense_Mutation p.Q1280E 0.16 benign(0.015) TCGA-AC-A23H-01 2 152711875 152711875 C T CACNB4 Missense_Mutation p.E295K 0.18 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 152727057 152727057 C G CACNB4 Silent p.L229L 0.18 TCGA-AC-A23H-01 2 153576999 153576999 C T ARL6IP6 Intron 0.19 TCGA-AC-A23H-01 2 154334842 154334842 G C RPRM Missense_Mutation p.L80V 0.36 deleterious(0.01) possibly_damaging(0.801) TCGA-AC-A23H-01 2 1546391 1546391 C T TPO 3'UTR 0.12 TCGA-AC-A23H-01 2 155102453 155102453 G C GALNT13 Missense_Mutation p.R272T 0.17 deleterious(0.02) possibly_damaging(0.735) TCGA-AC-A23H-01 2 157182191 157182191 G A NR4A2 3'UTR 0.16 TCGA-AC-A23H-01 2 158390334 158390334 G C ACVR1C 3'UTR 0.17 TCGA-AC-A23H-01 2 160035382 160035382 C T TANC1 Nonsense_Mutation p.Q740* 0.23 TCGA-AC-A23H-01 2 160182372 160182372 C T BAZ2B Missense_Mutation p.E2001K 0.11 benign(0.297) TCGA-AC-A23H-01 2 160189167 160189167 C T BAZ2B Missense_Mutation p.E1943K 0.24 probably_damaging(0.999) TCGA-AC-A23H-01 2 160287376 160287376 G C BAZ2B Missense_Mutation p.S731C 0.21 benign(0.005) TCGA-AC-A23H-01 2 160289507 160289507 G C BAZ2B Missense_Mutation p.S554C 0.16 possibly_damaging(0.7) TCGA-AC-A23H-01 2 160604370 160604370 C G MARCH7 Nonsense_Mutation p.S190* 0.22 TCGA-AC-A23H-01 2 160806272 160806272 C G PLA2R1 Missense_Mutation p.D1186H 0.10 deleterious(0.03) possibly_damaging(0.765) TCGA-AC-A23H-01 2 160983019 160983019 G A ITGB6 Missense_Mutation p.S585F 0.23 deleterious(0) possibly_damaging(0.859) TCGA-AC-A23H-01 2 161056622 161056622 C T ITGB6 5'UTR 0.15 TCGA-AC-A23H-01 2 161138771 161138771 G C RBMS1 Intron 0.13 TCGA-AC-A23H-01 2 162224044 162224044 C T PSMD14 Missense_Mutation p.S35F 0.13 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 162738876 162738876 C T SLC4A10 Silent p.F372F 0.33 TCGA-AC-A23H-01 2 163070549 163070549 C T FAP Missense_Mutation p.D301N 0.21 tolerated(0.15) benign(0.079) TCGA-AC-A23H-01 2 163228505 163228505 G C KCNH7 Nonsense_Mutation p.S1142* 0.19 TCGA-AC-A23H-01 2 164466816 164466816 G C FIGN Nonsense_Mutation p.S509* 0.17 TCGA-AC-A23H-01 2 166170140 166170140 G C SCN2A Missense_Mutation p.E349Q 0.34 deleterious(0.01) possibly_damaging(0.69) TCGA-AC-A23H-01 2 166514302 166514302 G A CSRNP3 Silent p.L60L 0.37 TCGA-AC-A23H-01 2 166806235 166806235 C G TTC21B Splice_Site p.X8_splice 0.24 TCGA-AC-A23H-01 2 166847916 166847916 C G SCN1A Missense_Mutation p.E1957Q 0.16 deleterious(0.03) benign(0.007) TCGA-AC-A23H-01 2 167085206 167085206 G C SCN9A Missense_Mutation p.Q1390E 0.22 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 2 167099064 167099064 C G SCN9A Missense_Mutation p.S1181T 0.20 deleterious(0.03) benign(0.035) TCGA-AC-A23H-01 2 167108278 167108278 C T SCN9A Missense_Mutation p.D1146N 0.15 deleterious(0) possibly_damaging(0.52) TCGA-AC-A23H-01 2 167133666 167133666 C T SCN9A Missense_Mutation p.D890N 0.16 tolerated(0.42) benign(0.006) TCGA-AC-A23H-01 2 167273228 167273228 G C SCN7A Missense_Mutation p.L1135V 0.15 deleterious(0) possibly_damaging(0.673) TCGA-AC-A23H-01 2 167300026 167300026 C G SCN7A Missense_Mutation p.R596P 0.22 deleterious(0.01) possibly_damaging(0.709) TCGA-AC-A23H-01 2 16742328 16742328 G A FAM49A Silent p.L214L 0.27 TCGA-AC-A23H-01 2 168100820 168100820 G C XIRP2 Missense_Mutation p.R973T 0.11 benign(0.203) TCGA-AC-A23H-01 2 168101809 168101809 G A XIRP2 Missense_Mutation p.E1303K 0.12 probably_damaging(0.999) TCGA-AC-A23H-01 2 168106293 168106293 C G XIRP2 Silent p.L2797L 0.21 TCGA-AC-A23H-01 2 168106546 168106546 G C XIRP2 Missense_Mutation p.E2882Q 0.25 benign(0.187) TCGA-AC-A23H-01 2 168107180 168107180 G A XIRP2 Missense_Mutation p.R3093H 0.11 benign(0.001) TCGA-AC-A23H-01 2 169718518 169718518 C G NOSTRIN Missense_Mutation p.S505C 0.22 deleterious(0.03) probably_damaging(0.95) TCGA-AC-A23H-01 2 169757939 169757939 G T G6PC2 Missense_Mutation p.G33V 0.21 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 2 169814582 169814582 C T ABCB11 Silent p.L745L 0.24 TCGA-AC-A23H-01 2 169825950 169825950 C T ABCB11 Missense_Mutation p.E641K 0.19 tolerated(0.29) benign(0.008) TCGA-AC-A23H-01 2 169830266 169830266 G C ABCB11 Missense_Mutation p.L465V 0.16 tolerated(1) benign(0.019) TCGA-AC-A23H-01 2 169830272 169830272 T C ABCB11 Missense_Mutation p.T463A 0.18 deleterious(0) probably_damaging(0.94) TCGA-AC-A23H-01 2 170063427 170063427 G C LRP2 Missense_Mutation p.S2268C 0.28 possibly_damaging(0.682) TCGA-AC-A23H-01 2 170097850 170097850 G C LRP2 Missense_Mutation p.H1231Q 0.32 probably_damaging(0.997) TCGA-AC-A23H-01 2 170136934 170136934 G A LRP2 Missense_Mutation p.R423C 0.16 possibly_damaging(0.901) TCGA-AC-A23H-01 2 170492643 170492643 C T PPIG Silent p.F353F 0.15 TCGA-AC-A23H-01 2 170510698 170510698 G C CCDC173 Missense_Mutation p.I282M 0.15 deleterious(0.02) possibly_damaging(0.905) TCGA-AC-A23H-01 2 170665381 170665381 C A SSB Missense_Mutation p.A213E 0.12 tolerated(1) benign(0) TCGA-AC-A23H-01 2 170732338 170732338 C T UBR3 Silent p.V241V 0.22 TCGA-AC-A23H-01 2 171259500 171259500 G C MYO3B Missense_Mutation p.E758Q 0.09 deleterious(0.01) possibly_damaging(0.831) TCGA-AC-A23H-01 2 171974326 171974326 C T TLK1 Missense_Mutation p.E61K 0.16 deleterious_low_confidence(0) benign(0.333) TCGA-AC-A23H-01 2 172411263 172411263 G C CYBRD1 Missense_Mutation p.E263Q 0.17 deleterious(0.03) possibly_damaging(0.489) TCGA-AC-A23H-01 2 172690513 172690513 C G SLC25A12 Missense_Mutation p.D269H 0.08 deleterious(0) possibly_damaging(0.759) TCGA-AC-A23H-01 2 172822934 172822936 GAG AA HAT1 Frame_Shift_Del p.E206Kfs*14 0.23 TCGA-AC-A23H-01 2 173338824 173338824 G A ITGA6 Missense_Mutation p.E273K 0.20 tolerated(0.1) benign(0.012) TCGA-AC-A23H-01 2 173338826 173338826 G C ITGA6 Missense_Mutation p.E273D 0.20 tolerated(0.09) benign(0.007) TCGA-AC-A23H-01 2 173352101 173352101 G A ITGA6 Missense_Mutation p.D694N 0.24 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 2 174228557 174228557 C G CDCA7 Silent p.L211L 0.21 TCGA-AC-A23H-01 2 174777920 174777920 G C SP3 Nonsense_Mutation p.S636* 0.18 TCGA-AC-A23H-01 2 175087833 175087833 G C OLA1 Missense_Mutation p.H101D 0.17 tolerated(0.05) benign(0.044) TCGA-AC-A23H-01 2 175292711 175292711 A G SCRN3 3'UTR 0.16 TCGA-AC-A23H-01 2 175309868 175309868 C G GPR155 Missense_Mutation p.E684Q 0.13 tolerated(0.42) benign(0.015) TCGA-AC-A23H-01 2 175324620 175324620 G C GPR155 Missense_Mutation p.S586C 0.22 deleterious(0.04) benign(0.008) TCGA-AC-A23H-01 2 175326362 175326362 C G GPR155 Missense_Mutation p.E475Q 0.19 tolerated(0.14) benign(0.099) TCGA-AC-A23H-01 2 175711875 175711875 G C CHN1 Intron 0.25 TCGA-AC-A23H-01 2 175939549 175939549 C T ATF2 Missense_Mutation p.D436N 0.17 tolerated(0.11) benign(0.036) TCGA-AC-A23H-01 2 176794741 176794741 G C KIAA1715 Missense_Mutation p.S414C 0.17 deleterious_low_confidence(0.03) benign(0.013) TCGA-AC-A23H-01 2 176812261 176812261 G C KIAA1715 Nonsense_Mutation p.S218* 0.21 TCGA-AC-A23H-01 2 178096372 178096372 G C NFE2L2 Missense_Mutation p.S320C 0.31 tolerated(0.19) benign(0.021) TCGA-AC-A23H-01 2 179209060 179209060 G C OSBPL6 Missense_Mutation p.Q345H 0.26 tolerated(0.1) possibly_damaging(0.465) TCGA-AC-A23H-01 2 179251822 179251822 G A OSBPL6 Silent p.S729S 0.16 TCGA-AC-A23H-01 2 179308111 179308111 C G PRKRA Missense_Mutation p.E133Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 179397415 179397415 C T TTN Missense_Mutation p.D34643N 0.24 TCGA-AC-A23H-01 2 179422694 179422694 G A TTN Silent p.F29129F 0.24 TCGA-AC-A23H-01 2 179431833 179431833 C A TTN Silent p.V26342V 0.20 TCGA-AC-A23H-01 2 179438716 179438716 C G TTN Missense_Mutation p.R24048T 0.18 TCGA-AC-A23H-01 2 179444178 179444178 C G TTN Intron 0.18 TCGA-AC-A23H-01 2 179444447 179444447 C T TTN Missense_Mutation p.E22493K 0.17 TCGA-AC-A23H-01 2 179455824 179455824 C G TTN Missense_Mutation p.E20210Q 0.31 TCGA-AC-A23H-01 2 179468902 179468902 C G TTN Missense_Mutation p.G18171A 0.17 TCGA-AC-A23H-01 2 179482160 179482160 C T TTN Silent p.L15884L 0.12 TCGA-AC-A23H-01 2 179486000 179486000 G T TTN Missense_Mutation p.P15149T 0.21 TCGA-AC-A23H-01 2 179501357 179501357 G A TTN Silent p.F13699F 0.15 TCGA-AC-A23H-01 2 179575848 179575848 G A TTN Missense_Mutation p.S9372F 0.24 TCGA-AC-A23H-01 2 179577492 179577492 C G TTN Missense_Mutation p.G9087A 0.16 TCGA-AC-A23H-01 2 179586854 179586854 C T TTN Silent p.K7512K 0.23 TCGA-AC-A23H-01 2 179588746 179588746 C T TTN Silent p.E7080E 0.14 TCGA-AC-A23H-01 2 179596282 179596282 C G TTN Missense_Mutation p.E5737D 0.14 TCGA-AC-A23H-01 2 179596445 179596445 G A TTN Silent p.I5719I 0.23 TCGA-AC-A23H-01 2 179606109 179606109 G C TTN Missense_Mutation p.Q3951E 0.35 TCGA-AC-A23H-01 2 179612625 179612625 G C TTN Intron 0.23 TCGA-AC-A23H-01 2 17961304 17961304 G C GEN1 Missense_Mutation p.E442Q 0.18 deleterious(0.03) benign(0.424) TCGA-AC-A23H-01 2 179614138 179614138 C G TTN Intron 0.21 TCGA-AC-A23H-01 2 179640263 179640263 C G TTN Missense_Mutation p.E2110Q 0.23 TCGA-AC-A23H-01 2 179641400 179641400 C T TTN Missense_Mutation p.D1731N 0.18 TCGA-AC-A23H-01 2 17998319 17998319 C T MSGN1 Silent p.L178L 0.61 TCGA-AC-A23H-01 2 17998342 17998342 G C MSGN1 Missense_Mutation p.R186T 0.26 tolerated_low_confidence(0.2) benign(0.002) TCGA-AC-A23H-01 2 180815395 180815395 C G CWC22 Missense_Mutation p.E662Q 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-AC-A23H-01 2 180837917 180837917 T G CWC22 Intron 0.19 TCGA-AC-A23H-01 2 182360134 182360134 T A ITGA4 Missense_Mutation p.V459D 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 182363438 182363438 G C ITGA4 Silent p.V543V 0.22 TCGA-AC-A23H-01 2 182780892 182780892 C G SSFA2 Missense_Mutation p.S842C 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 183622506 183622506 G C DNAJC10 Missense_Mutation p.E633Q 0.18 tolerated(0.08) probably_damaging(0.936) TCGA-AC-A23H-01 2 185803052 185803052 G A ZNF804A Missense_Mutation p.E977K 0.13 deleterious(0.01) probably_damaging(0.956) TCGA-AC-A23H-01 2 18744907 18744907 C G NT5C1B 3'UTR 0.21 TCGA-AC-A23H-01 2 188343439 188343439 G C TFPI Intron 0.16 TCGA-AC-A23H-01 2 189875004 189875004 G C COL3A1 Missense_Mutation p.L1308F 0.18 unknown(0) TCGA-AC-A23H-01 2 189876652 189876652 G A COL3A1 3'UTR 0.20 TCGA-AC-A23H-01 2 190044366 190044366 G A COL5A2 5'UTR 0.18 TCGA-AC-A23H-01 2 190340084 190340084 G A WDR75 Missense_Mutation p.E812K 0.17 tolerated(0.16) benign(0.407) TCGA-AC-A23H-01 2 190927171 190927171 G C MSTN Nonsense_Mutation p.S51* 0.14 TCGA-AC-A23H-01 2 191843709 191843709 G A STAT1 Silent p.I582I 0.14 TCGA-AC-A23H-01 2 191862979 191862979 G C STAT1 Silent p.L199L 0.18 TCGA-AC-A23H-01 2 191894334 191894334 C G STAT4 3'UTR 0.25 TCGA-AC-A23H-01 2 191896200 191896200 G A STAT4 Missense_Mutation p.S696F 0.11 deleterious(0.05) possibly_damaging(0.62) TCGA-AC-A23H-01 2 191927564 191927564 C G STAT4 Missense_Mutation p.E289Q 0.14 deleterious(0.04) benign(0.035) TCGA-AC-A23H-01 2 19553095 19553095 G C OSR1 Missense_Mutation p.P158A 0.20 deleterious(0.03) benign(0.027) TCGA-AC-A23H-01 2 196729727 196729727 C G DNAH7 Missense_Mutation p.D2218H 0.31 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 197172656 197172656 C T HECW2 Intron 0.34 TCGA-AC-A23H-01 2 197184224 197184224 C T HECW2 Missense_Mutation p.D464N 0.19 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-AC-A23H-01 2 197199240 197199240 C T HECW2 Missense_Mutation p.E135K 0.19 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 2 197298072 197298072 C T HECW2 Missense_Mutation p.E26K 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-AC-A23H-01 2 197511131 197511131 G A CCDC150 Missense_Mutation p.E27K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A23H-01 2 197523537 197523537 G A CCDC150 Missense_Mutation p.E200K 0.41 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 197538982 197538982 G C CCDC150 Missense_Mutation p.L349F 0.17 deleterious(0) possibly_damaging(0.885) TCGA-AC-A23H-01 2 197763089 197763089 G A PGAP1 Missense_Mutation p.S271L 0.15 deleterious(0) benign(0.276) TCGA-AC-A23H-01 2 197781290 197781290 C G PGAP1 Missense_Mutation p.R110T 0.19 deleterious(0) possibly_damaging(0.794) TCGA-AC-A23H-01 2 197990733 197990733 G A ANKRD44 Missense_Mutation p.S97L 0.12 deleterious(0.02) probably_damaging(0.921) TCGA-AC-A23H-01 2 198270046 198270046 G A SF3B1 Missense_Mutation p.L464F 0.33 deleterious(0) possibly_damaging(0.771) TCGA-AC-A23H-01 2 198273151 198273151 C G SF3B1 Silent p.L353L 0.17 TCGA-AC-A23H-01 2 198358088 198358088 C T HSPD1 Missense_Mutation p.D277N 0.15 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 2 198365088 198365088 C A HSPE1 5'UTR 0.23 TCGA-AC-A23H-01 2 198415446 198415446 C A HSPE1-MOB4 3'UTR 0.15 TCGA-AC-A23H-01 2 198436896 198436896 C G RFTN2 Missense_Mutation p.E448Q 0.39 tolerated(0.25) benign(0.011) TCGA-AC-A23H-01 2 198950526 198950526 C G PLCL1 Missense_Mutation p.S762W 0.17 deleterious(0) possibly_damaging(0.907) TCGA-AC-A23H-01 2 200173558 200173558 G C SATB2 Missense_Mutation p.I555M 0.21 deleterious(0.02) possibly_damaging(0.89) TCGA-AC-A23H-01 2 200188564 200188564 G C SATB2 Missense_Mutation p.Q502E 0.20 deleterious(0) possibly_damaging(0.781) TCGA-AC-A23H-01 2 200193423 200193423 G A SATB2 Nonsense_Mutation p.Q462* 0.43 TCGA-AC-A23H-01 2 20101480 20101480 C A TTC32 Nonsense_Mutation p.E46* 0.27 TCGA-AC-A23H-01 2 20130254 20130254 G C WDR35 Missense_Mutation p.F1019L 0.25 tolerated(0.94) benign(0.002) TCGA-AC-A23H-01 2 201354674 201354674 C T KCTD18 3'UTR 0.17 TCGA-AC-A23H-01 2 20141591 20141591 G A WDR35 Nonsense_Mutation p.Q630* 0.16 TCGA-AC-A23H-01 2 201756781 201756781 G A NIF3L1 Missense_Mutation p.D39N 0.25 tolerated(0.25) benign(0.033) TCGA-AC-A23H-01 2 201814306 201814306 C G ORC2 Missense_Mutation p.R100T 0.10 tolerated(0.68) benign(0.004) TCGA-AC-A23H-01 2 201846308 201846308 C T FAM126B Silent p.K426K 0.24 TCGA-AC-A23H-01 2 202050503 202050503 G A CASP10 Translation_Start_Site p.M1? 0.17 deleterious(0.01) probably_damaging(0.917) TCGA-AC-A23H-01 2 202068450 202068450 C T CASP10 Intron 0.19 TCGA-AC-A23H-01 2 202254093 202254093 C G TRAK2 Missense_Mutation p.E443Q 0.14 tolerated(0.59) benign(0.014) TCGA-AC-A23H-01 2 202260101 202260101 C T TRAK2 Missense_Mutation p.R279Q 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-AC-A23H-01 2 202285360 202285360 C T TRAK2 5'UTR 0.14 TCGA-AC-A23H-01 2 202358579 202358579 C T ALS2CR11 Missense_Mutation p.E829K 0.23 tolerated(0.09) benign(0.038) TCGA-AC-A23H-01 2 202569272 202569272 C T ALS2 Silent p.E1581E 0.21 TCGA-AC-A23H-01 2 202900866 202900866 G A FZD7 Nonsense_Mutation p.W499* 0.20 TCGA-AC-A23H-01 2 203825996 203825996 G C CARF Missense_Mutation p.E227Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 2 203980744 203980744 C G NBEAL1 Missense_Mutation p.S819C 0.22 deleterious(0.04) benign(0.013) TCGA-AC-A23H-01 2 204009439 204009439 C G NBEAL1 Missense_Mutation p.I1626M 0.19 deleterious(0.04) benign(0.038) TCGA-AC-A23H-01 2 204016301 204016301 G C NBEAL1 Missense_Mutation p.R1830T 0.14 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 2 204103758 204103758 G C CYP20A1 5'UTR 0.25 TCGA-AC-A23H-01 2 204255823 204255823 C G ABI2 Missense_Mutation p.Q173E 0.29 deleterious(0.01) probably_damaging(0.951) TCGA-AC-A23H-01 2 204313535 204313535 G A RAPH1 Nonsense_Mutation p.Q480* 0.13 TCGA-AC-A23H-01 2 204326613 204326613 G A RAPH1 Silent p.I256I 0.17 TCGA-AC-A23H-01 2 204354534 204354534 C T RAPH1 Missense_Mutation p.E169K 0.16 probably_damaging(0.993) TCGA-AC-A23H-01 2 206869491 206869491 G A INO80D Silent p.V895V 0.09 TCGA-AC-A23H-01 2 206869976 206869976 T A INO80D Missense_Mutation p.N734Y 0.07 deleterious(0) benign(0.445) TCGA-AC-A23H-01 2 206921045 206921045 C A INO80D Missense_Mutation p.D281Y 0.18 deleterious_low_confidence(0.01) benign(0.439) TCGA-AC-A23H-01 2 207516463 207516463 G C DYTN 3'UTR 0.17 TCGA-AC-A23H-01 2 207619974 207619974 G T MDH1B Missense_Mutation p.F223L 0.18 tolerated(0.65) benign(0) TCGA-AC-A23H-01 2 207632006 207632006 G A FASTKD2 Missense_Mutation p.D197N 0.49 tolerated(0.06) benign(0.006) TCGA-AC-A23H-01 2 20845199 20845199 C G HS1BP3 Missense_Mutation p.K33N 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-AC-A23H-01 2 208589556 208589556 C T CCNYL1 Missense_Mutation p.P85S 0.41 tolerated(0.07) probably_damaging(0.969) TCGA-AC-A23H-01 2 208589589 208589589 C G CCNYL1 Missense_Mutation p.Q96E 0.14 deleterious(0.02) benign(0.198) TCGA-AC-A23H-01 2 20871056 20871056 C T GDF7 Silent p.D408D 0.31 TCGA-AC-A23H-01 2 208866250 208866250 C A PLEKHM3 Silent p.G38G 0.17 TCGA-AC-A23H-01 2 209010698 209010698 C T CRYGB Missense_Mutation p.E18K 0.36 deleterious(0) possibly_damaging(0.728) TCGA-AC-A23H-01 2 20901356 20901356 C T C2orf43 Missense_Mutation p.E254K 0.22 tolerated(0.6) benign(0.329) TCGA-AC-A23H-01 2 209103936 209103936 C G IDH1 Missense_Mutation p.R338T 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.882) TCGA-AC-A23H-01 2 209113264 209113264 C G IDH1 Missense_Mutation p.K81N 0.15 tolerated_low_confidence(0.13) benign(0.004) TCGA-AC-A23H-01 2 209163367 209163367 C T PIKFYVE Missense_Mutation p.S305L 0.18 deleterious(0.01) probably_damaging(0.959) TCGA-AC-A23H-01 2 210558743 210558743 G A MAP2 Missense_Mutation p.D617N 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.559) TCGA-AC-A23H-01 2 210841634 210841634 C T UNC80 Intron 0.24 TCGA-AC-A23H-01 2 210896088 210896088 C T KANSL1L Intron 0.21 TCGA-AC-A23H-01 2 211452781 211452781 G A CPS1 Splice_Site p.X214_splice 0.21 TCGA-AC-A23H-01 2 211512593 211512593 G A CPS1 Missense_Mutation p.G1056S 0.21 tolerated(0.99) benign(0.001) TCGA-AC-A23H-01 2 212248171 212248171 C G ERBB4 3'UTR 0.31 TCGA-AC-A23H-01 2 212251629 212251629 C G ERBB4 Missense_Mutation p.E1144Q 0.14 tolerated(0.32) benign(0.028) TCGA-AC-A23H-01 2 21230001 21230001 G C APOB Missense_Mutation p.Q3247E 0.29 benign(0.082) TCGA-AC-A23H-01 2 21236248 21236248 C G APOB Missense_Mutation p.E1334Q 0.31 possibly_damaging(0.767) TCGA-AC-A23H-01 2 212652755 212652755 G A ERBB4 Missense_Mutation p.S184L 0.14 tolerated(0.31) benign(0.002) TCGA-AC-A23H-01 2 215278917 215278917 G A VWC2L 5'UTR 0.19 TCGA-AC-A23H-01 2 215610501 215610501 G A BARD1 Silent p.L585L 0.19 TCGA-AC-A23H-01 2 215868942 215868942 C A ABCA12 Missense_Mutation p.D892Y 0.22 deleterious(0) possibly_damaging(0.675) TCGA-AC-A23H-01 2 216249614 216249614 C T FN1 Silent p.V1566V 0.22 TCGA-AC-A23H-01 2 216960800 216960800 G T TMEM169 Silent p.G38G 0.16 TCGA-AC-A23H-01 2 217148425 217148425 C G MARCH4 Missense_Mutation p.D182H 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-AC-A23H-01 2 217347508 217347508 G C SMARCAL1 Missense_Mutation p.E891D 0.15 tolerated(0.18) benign(0.1) TCGA-AC-A23H-01 2 218925652 218925652 G A CXCR2P1 RNA 0.23 TCGA-AC-A23H-01 2 219114175 219114175 C G ARPC2 Missense_Mutation p.I255M 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 219137293 219137293 G T PNKD Intron 0.24 TCGA-AC-A23H-01 2 219227513 219227513 C G C2orf62 Nonsense_Mutation p.S173* 0.14 TCGA-AC-A23H-01 2 219297647 219297647 C G VIL1 Missense_Mutation p.I491M 0.16 tolerated(0.14) benign(0.282) TCGA-AC-A23H-01 2 219374828 219374828 C G USP37 Missense_Mutation p.R300T 0.08 tolerated(0.09) possibly_damaging(0.677) TCGA-AC-A23H-01 2 219411690 219411690 G C USP37 Missense_Mutation p.S185C 0.21 tolerated(0.06) possibly_damaging(0.778) TCGA-AC-A23H-01 2 219449345 219449345 C T RQCD1 Missense_Mutation p.L111F 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-AC-A23H-01 2 219503021 219503021 C G ZNF142 3'UTR 0.19 TCGA-AC-A23H-01 2 219503034 219503034 C T ZNF142 3'UTR 0.17 TCGA-AC-A23H-01 2 219527991 219527991 C G BCS1L Missense_Mutation p.A381G 0.17 tolerated(0.17) benign(0.029) TCGA-AC-A23H-01 2 219602565 219602565 G T TTLL4 Nonsense_Mutation p.E56* 0.22 TCGA-AC-A23H-01 2 219846886 219846886 C G FEV Missense_Mutation p.E74Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 219922187 219922187 G C IHH Nonsense_Mutation p.S182* 0.19 TCGA-AC-A23H-01 2 220077977 220077977 G A ABCB6 Silent p.F597F 0.21 TCGA-AC-A23H-01 2 220078588 220078588 G C ABCB6 Missense_Mutation p.S513C 0.17 tolerated(0.11) possibly_damaging(0.464) TCGA-AC-A23H-01 2 220098854 220098854 G A ANKZF1 Splice_Site p.X350_splice 0.16 TCGA-AC-A23H-01 2 220150684 220150684 C T DNAJB2 3'UTR 0.19 TCGA-AC-A23H-01 2 220161522 220161522 C T PTPRN Silent p.L753L 0.19 TCGA-AC-A23H-01 2 220167411 220167411 G C PTPRN Missense_Mutation p.L176V 0.19 tolerated(0.21) possibly_damaging(0.877) TCGA-AC-A23H-01 2 220397602 220397602 C T ASIC4 Intron 0.22 TCGA-AC-A23H-01 2 220429964 220429964 C T OBSL1 Missense_Mutation p.D803N 0.28 deleterious(0) benign(0.347) TCGA-AC-A23H-01 2 220501566 220501566 C T SLC4A3 Silent p.F862F 0.21 TCGA-AC-A23H-01 2 222428888 222428888 G C EPHA4 Nonsense_Mutation p.S129* 0.19 TCGA-AC-A23H-01 2 223161802 223161802 G A PAX3 Silent p.I72I 0.17 TCGA-AC-A23H-01 2 223507655 223507655 G T FARSB Missense_Mutation p.L62I 0.19 tolerated(1) benign(0.003) TCGA-AC-A23H-01 2 224623365 224623365 G A AP1S3 3'UTR 0.23 TCGA-AC-A23H-01 2 227662668 227662668 C T IRS1 Missense_Mutation p.E263K 0.19 deleterious(0) probably_damaging(0.964) TCGA-AC-A23H-01 2 227663170 227663170 G C IRS1 Missense_Mutation p.I95M 0.10 deleterious(0) probably_damaging(0.91) TCGA-AC-A23H-01 2 228174031 228174031 C T COL4A3 Silent p.I1584I 0.13 TCGA-AC-A23H-01 2 228855869 228855869 G C SPHKAP Silent p.A1602A 0.17 TCGA-AC-A23H-01 2 228860376 228860376 C G SPHKAP Missense_Mutation p.E1495Q 0.19 deleterious(0.04) benign(0.178) TCGA-AC-A23H-01 2 228884192 228884192 C T SPHKAP Missense_Mutation p.D460N 0.23 tolerated(0.09) benign(0.111) TCGA-AC-A23H-01 2 230652275 230652275 G A TRIP12 Silent p.I1572I 0.41 TCGA-AC-A23H-01 2 230679862 230679862 G A TRIP12 Nonsense_Mutation p.R514* 0.17 TCGA-AC-A23H-01 2 230723707 230723707 G T TRIP12 Missense_Mutation p.Q228K 0.13 deleterious_low_confidence(0.04) benign(0.031) TCGA-AC-A23H-01 2 230911083 230911083 G A SLC16A14 Silent p.L253L 0.52 TCGA-AC-A23H-01 2 231067385 231067385 G C SP110 Missense_Mutation p.Q320E 0.18 tolerated(0.36) unknown(0) TCGA-AC-A23H-01 2 231090467 231090467 G A SP140 5'UTR 0.23 TCGA-AC-A23H-01 2 231266056 231266056 C T SP140L Intron 0.16 TCGA-AC-A23H-01 2 231267669 231267669 C T SP140L 3'UTR 0.13 TCGA-AC-A23H-01 2 231867407 231867407 C G SPATA3 Nonsense_Mutation p.S161* 0.17 TCGA-AC-A23H-01 2 232035373 232035373 G A PSMD1 Missense_Mutation p.E937K 0.13 tolerated(0.74) probably_damaging(0.931) TCGA-AC-A23H-01 2 232319692 232319692 C G NCL 3'UTR 0.21 TCGA-AC-A23H-01 2 232319972 232319972 C T NCL Missense_Mutation p.G688E 0.16 probably_damaging(0.998) TCGA-AC-A23H-01 2 232320147 232320147 C A NCL Missense_Mutation p.G674V 0.14 possibly_damaging(0.841) TCGA-AC-A23H-01 2 232389788 232389788 C T NMUR1 Missense_Mutation p.G416D 0.43 tolerated_low_confidence(0.29) benign(0.024) TCGA-AC-A23H-01 2 232393432 232393432 G T NMUR1 Missense_Mutation p.F100L 0.18 tolerated(0.36) benign(0.014) TCGA-AC-A23H-01 2 232393706 232393706 G C NMUR1 Missense_Mutation p.S9C 0.16 deleterious(0) possibly_damaging(0.861) TCGA-AC-A23H-01 2 233404443 233404443 G C CHRNG 5'UTR 0.23 TCGA-AC-A23H-01 2 233635830 233635830 C A KCNJ13 Missense_Mutation p.M81I 0.18 tolerated(0.59) benign(0.033) TCGA-AC-A23H-01 2 234255570 234255570 C T SAG 3'UTR 0.20 TCGA-AC-A23H-01 2 234354333 234354333 C T DGKD Missense_Mutation p.S420L 0.12 deleterious(0.01) benign(0.145) TCGA-AC-A23H-01 2 234402000 234402000 C G USP40 Intron 0.17 TCGA-AC-A23H-01 2 234433206 234433206 C T USP40 Missense_Mutation p.D616N 0.25 deleterious(0.05) benign(0.162) TCGA-AC-A23H-01 2 234527048 234527048 C G UGT1A8 Missense_Mutation p.S232C 0.20 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 234601797 234601797 C A UGT1A6 Silent p.L49L 0.11 TCGA-AC-A23H-01 2 234652393 234652393 G A UGT1A10 Intron 0.26 TCGA-AC-A23H-01 2 234858712 234858712 C G TRPM8 Silent p.V354V 0.15 TCGA-AC-A23H-01 2 234878345 234878345 C G TRPM8 Missense_Mutation p.L678V 0.24 deleterious(0) benign(0.346) TCGA-AC-A23H-01 2 235949651 235949651 G A SH3BP4 Missense_Mutation p.D80N 0.18 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-AC-A23H-01 2 236839416 236839416 C A AGAP1 Silent p.V444V 0.18 TCGA-AC-A23H-01 2 237253241 237253241 C T IQCA1 Missense_Mutation p.E639K 0.15 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 2 237489207 237489207 G T ACKR3 Missense_Mutation p.M33I 0.13 tolerated(0.44) benign(0.006) TCGA-AC-A23H-01 2 237994592 237994592 G A COPS8 5'UTR 0.19 TCGA-AC-A23H-01 2 238303764 238303764 G C COL6A3 Missense_Mutation p.R59G 0.16 probably_damaging(0.983) TCGA-AC-A23H-01 2 23862102 23862102 G T KLHL29 Missense_Mutation p.D127Y 0.31 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-AC-A23H-01 2 238671320 238671320 G A LRRFIP1 Missense_Mutation p.E322K 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-AC-A23H-01 2 239103487 239103487 A C ILKAP Missense_Mutation p.L27R 0.36 tolerated_low_confidence(0.09) benign(0.002) TCGA-AC-A23H-01 2 239170903 239170903 G A PER2 Silent p.T412T 0.43 TCGA-AC-A23H-01 2 240056113 240056113 C T HDAC4 Silent p.E374E 0.11 TCGA-AC-A23H-01 2 241070506 241070506 C G MYEOV2 Splice_Site p.X77_splice 0.23 TCGA-AC-A23H-01 2 241512584 241512584 G A RNPEPL1 Missense_Mutation p.E12K 0.25 tolerated(0.19) benign(0.018) TCGA-AC-A23H-01 2 241516344 241516344 G C RNPEPL1 Missense_Mutation p.Q376H 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-AC-A23H-01 2 241555837 241555837 G C GPR35 5'UTR 0.25 TCGA-AC-A23H-01 2 241722477 241722477 G A KIF1A Missense_Mutation p.S283F 0.14 deleterious(0) possibly_damaging(0.895) TCGA-AC-A23H-01 2 241991479 241991479 C G SNED1 Missense_Mutation p.S625C 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 241991819 241991819 G A SNED1 Missense_Mutation p.E673K 0.22 tolerated(0.42) benign(0.158) TCGA-AC-A23H-01 2 242065992 242065992 C G PASK Missense_Mutation p.D780H 0.16 deleterious(0.03) probably_damaging(0.973) TCGA-AC-A23H-01 2 242178076 242178076 C T HDLBP Missense_Mutation p.E913K 0.17 tolerated(0.15) possibly_damaging(0.672) TCGA-AC-A23H-01 2 242178078 242178078 C T HDLBP Missense_Mutation p.R912K 0.18 tolerated(0.14) benign(0.062) TCGA-AC-A23H-01 2 242501813 242501813 C T BOK Nonsense_Mutation p.Q91* 0.35 TCGA-AC-A23H-01 2 24302332 24302332 C G TP53I3 Silent p.L266L 0.22 TCGA-AC-A23H-01 2 24427247 24427247 C G ITSN2 Missense_Mutation p.Q1601H 0.18 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 2 24896236 24896236 G C NCOA1 Missense_Mutation p.E86D 0.32 tolerated(0.43) possibly_damaging(0.706) TCGA-AC-A23H-01 2 25037353 25037353 C G CENPO Missense_Mutation p.H109D 0.30 tolerated(0.14) benign(0.058) TCGA-AC-A23H-01 2 25174349 25174349 G A DNAJC27 Silent p.F201F 0.23 TCGA-AC-A23H-01 2 25469176 25469176 C G DNMT3A Missense_Mutation p.E428Q 0.17 tolerated(0.21) possibly_damaging(0.608) TCGA-AC-A23H-01 2 25470018 25470018 C T DNMT3A Missense_Mutation p.E342K 0.20 deleterious(0.05) probably_damaging(0.956) TCGA-AC-A23H-01 2 25966074 25966074 C T ASXL2 Silent p.L1044L 0.28 TCGA-AC-A23H-01 2 25978935 25978935 C T ASXL2 Missense_Mutation p.E330K 0.38 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 26257393 26257393 G C RAB10 5'UTR 0.35 TCGA-AC-A23H-01 2 26257507 26257507 C G RAB10 Missense_Mutation p.F10L 0.29 tolerated(0.09) benign(0.048) TCGA-AC-A23H-01 2 26541774 26541774 C T GPR113 Silent p.L48L 0.27 TCGA-AC-A23H-01 2 27322907 27322907 C G KHK 3'UTR 0.40 TCGA-AC-A23H-01 2 27325082 27325082 G C CGREF1 Silent p.L75L 0.19 TCGA-AC-A23H-01 2 27356068 27356068 G C PREB Missense_Mutation p.P155A 0.26 tolerated(0.46) benign(0.005) TCGA-AC-A23H-01 2 27455994 27455994 G A CAD Missense_Mutation p.E993K 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-AC-A23H-01 2 27456324 27456324 G A CAD Missense_Mutation p.E1046K 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 27464811 27464811 G C CAD Silent p.V1972V 0.31 TCGA-AC-A23H-01 2 27479271 27479271 G A SLC30A3 Missense_Mutation p.S334F 0.22 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 2 27500865 27500865 G A DNAJC5G Silent p.L119L 0.16 TCGA-AC-A23H-01 2 27527902 27527902 G T TRIM54 Nonsense_Mutation p.E239* 0.23 TCGA-AC-A23H-01 2 27532799 27532799 C T MPV17 Nonsense_Mutation p.W171* 0.09 TCGA-AC-A23H-01 2 27551026 27551026 G A GTF3C2 Nonsense_Mutation p.Q763* 0.18 TCGA-AC-A23H-01 2 27560423 27560423 C T GTF3C2 Missense_Mutation p.R318Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 27590485 27590485 C T EIF2B4 Intron 0.23 TCGA-AC-A23H-01 2 27597954 27597954 G T SNX17 Missense_Mutation p.W236C 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 27672601 27672601 C G IFT172 Missense_Mutation p.E1373Q 0.22 tolerated(0.19) benign(0.126) TCGA-AC-A23H-01 2 27706176 27706176 C A IFT172 Nonsense_Mutation p.E184* 0.23 TCGA-AC-A23H-01 2 27800157 27800157 C A C2orf16 Missense_Mutation p.Q240K 0.17 tolerated(0.24) possibly_damaging(0.491) TCGA-AC-A23H-01 2 27804464 27804464 G C C2orf16 Missense_Mutation p.Q1675H 0.25 deleterious(0.02) benign(0.006) TCGA-AC-A23H-01 2 27805229 27805229 G C C2orf16 Missense_Mutation p.E1930D 0.28 tolerated_low_confidence(0.07) unknown(0) TCGA-AC-A23H-01 2 28764677 28764677 C T PLB1 Missense_Mutation p.S293L 0.14 tolerated(0.5) benign(0.001) TCGA-AC-A23H-01 2 28836897 28836897 G C PLB1 Splice_Site p.X1044_splice 0.20 TCGA-AC-A23H-01 2 29083989 29083989 C G TRMT61B Missense_Mutation p.D330H 0.22 tolerated(0.14) probably_damaging(0.937) TCGA-AC-A23H-01 2 29296731 29296731 C T C2orf71 Missense_Mutation p.E133K 0.23 tolerated(0.08) possibly_damaging(0.888) TCGA-AC-A23H-01 2 29443591 29443591 C G ALK Missense_Mutation p.R1209P 0.18 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 2 31152341 31152341 C T GALNT14 Silent p.R362R 0.17 TCGA-AC-A23H-01 2 31417301 31417301 C T CAPN14 Silent p.L308L 0.15 TCGA-AC-A23H-01 2 32460539 32460539 C T NLRC4 Missense_Mutation p.E905K 0.23 tolerated(0.92) benign(0) TCGA-AC-A23H-01 2 32466148 32466148 G C NLRC4 Silent p.L768L 0.25 TCGA-AC-A23H-01 2 32770731 32770731 C T BIRC6 Missense_Mutation p.S4205L 0.27 benign(0.178) TCGA-AC-A23H-01 2 32800342 32800342 G A BIRC6 Missense_Mutation p.E4422K 0.16 possibly_damaging(0.76) TCGA-AC-A23H-01 2 33359906 33359906 C T LTBP1 Silent p.I360I 0.22 TCGA-AC-A23H-01 2 33413719 33413719 C G LTBP1 Nonsense_Mutation p.S501* 0.29 TCGA-AC-A23H-01 2 36780185 36780185 G A FEZ2 3'UTR 0.19 TCGA-AC-A23H-01 2 37208600 37208600 G C HEATR5B 3'UTR 0.27 TCGA-AC-A23H-01 2 37374076 37374076 C T EIF2AK2 Missense_Mutation p.E54K 0.24 tolerated(0.23) benign(0.1) TCGA-AC-A23H-01 2 37374920 37374920 G C EIF2AK2 Missense_Mutation p.F10L 0.25 deleterious(0.02) benign(0.435) TCGA-AC-A23H-01 2 37516622 37516622 G C PRKD3 Missense_Mutation p.F198L 0.25 tolerated(0.08) benign(0.306) TCGA-AC-A23H-01 2 38244435 38244435 G A RMDN2 Intron 0.25 TCGA-AC-A23H-01 2 38298141 38298141 G A CYP1B1 Silent p.I452I 0.17 TCGA-AC-A23H-01 2 38523229 38523229 C G ATL2 Missense_Mutation p.L553F 0.23 tolerated(0.33) benign(0.024) TCGA-AC-A23H-01 2 38570580 38570580 G C ATL2 Missense_Mutation p.L65V 0.14 tolerated(0.36) benign(0.001) TCGA-AC-A23H-01 2 40402401 40402401 C G SLC8A1 Missense_Mutation p.G646R 0.27 tolerated(0.34) benign(0.005) TCGA-AC-A23H-01 2 42544566 42544566 G C EML4 Splice_Site p.X686_splice 0.23 TCGA-AC-A23H-01 2 43787492 43787492 C T THADA Missense_Mutation p.D782N 0.19 tolerated(0.36) benign(0.171) TCGA-AC-A23H-01 2 43819177 43819177 C T THADA Missense_Mutation p.D29N 0.14 tolerated(0.18) probably_damaging(0.928) TCGA-AC-A23H-01 2 44073413 44073413 G A ABCG8 Silent p.V95V 0.16 TCGA-AC-A23H-01 2 44105165 44105165 C T ABCG8 3'UTR 0.30 TCGA-AC-A23H-01 2 44115551 44115551 G A LRPPRC 3'UTR 0.23 TCGA-AC-A23H-01 2 44152221 44152221 G C LRPPRC Missense_Mutation p.L961V 0.19 deleterious(0.03) possibly_damaging(0.562) TCGA-AC-A23H-01 2 44170830 44170830 C A LRPPRC Nonsense_Mutation p.E834* 0.20 TCGA-AC-A23H-01 2 44428725 44428725 G C PPM1B Missense_Mutation p.R129S 0.19 deleterious(0.02) possibly_damaging(0.658) TCGA-AC-A23H-01 2 44599931 44599931 C T CAMKMT Missense_Mutation p.S72L 0.18 deleterious(0.01) benign(0.055) TCGA-AC-A23H-01 2 44933423 44933423 C A CAMKMT Intron 0.24 TCGA-AC-A23H-01 2 45620165 45620165 C T SRBD1 Missense_Mutation p.E873K 0.20 tolerated(0.64) benign(0.002) TCGA-AC-A23H-01 2 45789820 45789820 C G SRBD1 Missense_Mutation p.E461Q 0.21 tolerated(0.13) benign(0.066) TCGA-AC-A23H-01 2 45800405 45800405 C T SRBD1 Missense_Mutation p.D416N 0.18 tolerated(0.15) benign(0.003) TCGA-AC-A23H-01 2 45826704 45826704 G C SRBD1 Missense_Mutation p.Q178E 0.22 tolerated_low_confidence(1) benign(0.001) TCGA-AC-A23H-01 2 47403607 47403607 G A CALM2 5'UTR 0.12 TCGA-AC-A23H-01 2 47707949 47707949 G C MSH2 Missense_Mutation p.G858A 0.20 tolerated(0.19) benign(0.013) TCGA-AC-A23H-01 2 48026509 48026509 G T MSH6 Nonsense_Mutation p.E463* 0.20 TCGA-AC-A23H-01 2 48026911 48026911 G C MSH6 Missense_Mutation p.E597Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 2 48033789 48033789 C T MSH6 Missense_Mutation p.R1334W 0.21 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 48602073 48602073 C T FOXN2 Missense_Mutation p.P263S 0.21 tolerated(0.06) benign(0.004) TCGA-AC-A23H-01 2 48808576 48808576 C T STON1-GTF2A1L Silent p.F268F 0.33 TCGA-AC-A23H-01 2 48915911 48915911 C G LHCGR Missense_Mutation p.R342P 0.18 tolerated(0.23) benign(0.264) TCGA-AC-A23H-01 2 48915958 48915958 C G LHCGR Silent p.L326L 0.20 TCGA-AC-A23H-01 2 50149365 50149365 C G NRXN1 Missense_Mutation p.R1454T 0.23 tolerated_low_confidence(0.05) benign(0.009) TCGA-AC-A23H-01 2 54864868 54864868 G A SPTBN1 Silent p.E1262E 0.14 TCGA-AC-A23H-01 2 55056533 55056533 G C EML6 Missense_Mutation p.D256H 0.20 deleterious(0) probably_damaging(0.992) TCGA-AC-A23H-01 2 55090994 55090994 G A EML6 Missense_Mutation p.E634K 0.21 tolerated(0.06) probably_damaging(0.928) TCGA-AC-A23H-01 2 55523081 55523081 C G CCDC88A Missense_Mutation p.V1734L 0.15 tolerated(0.35) benign(0.002) TCGA-AC-A23H-01 2 55536132 55536132 C T CCDC88A Missense_Mutation p.M1399I 0.27 tolerated(0.07) benign(0.087) TCGA-AC-A23H-01 2 55591145 55591145 C T CCDC88A Missense_Mutation p.E143K 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-AC-A23H-01 2 55615932 55615932 C G CCDC88A Missense_Mutation p.Q85H 0.16 tolerated(0.72) benign(0.139) TCGA-AC-A23H-01 2 55764623 55764623 C T CCDC104 Missense_Mutation p.S181L 0.12 tolerated(0.38) benign(0.002) TCGA-AC-A23H-01 2 55791461 55791461 C T SMEK2 Missense_Mutation p.E750K 0.39 tolerated(0.2) benign(0.003) TCGA-AC-A23H-01 2 55842596 55842596 C T SMEK2 Silent p.Q63Q 0.21 TCGA-AC-A23H-01 2 55906821 55906821 C G PNPT1 Missense_Mutation p.Q225H 0.21 tolerated(0.14) benign(0.009) TCGA-AC-A23H-01 2 58313488 58313488 G A VRK2 Missense_Mutation p.E91K 0.11 tolerated(1) benign(0.003) TCGA-AC-A23H-01 2 58457010 58457010 C G FANCL Splice_Site p.X52_splice 0.13 TCGA-AC-A23H-01 2 61275807 61275807 G A PEX13 Missense_Mutation p.E372K 0.14 tolerated(0.09) benign(0.046) TCGA-AC-A23H-01 2 61310401 61310401 C T KIAA1841 Missense_Mutation p.S281L 0.12 deleterious(0.01) benign(0.032) TCGA-AC-A23H-01 2 61319629 61319629 G C KIAA1841 Missense_Mutation p.L373F 0.33 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 2 61319638 61319638 T C KIAA1841 Silent p.L376L 0.35 TCGA-AC-A23H-01 2 61515928 61515928 C T USP34 Missense_Mutation p.D1545N 0.18 tolerated(0.05) possibly_damaging(0.852) TCGA-AC-A23H-01 2 61515958 61515958 C G USP34 Missense_Mutation p.D1535H 0.41 tolerated(0.05) possibly_damaging(0.687) TCGA-AC-A23H-01 2 61719760 61719760 G C XPO1 Missense_Mutation p.S503C 0.25 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 2 61720141 61720141 C G XPO1 Missense_Mutation p.L431F 0.46 deleterious(0) probably_damaging(0.924) TCGA-AC-A23H-01 2 61760993 61760993 G A XPO1 Missense_Mutation p.R14C 0.22 deleterious(0.03) benign(0.147) TCGA-AC-A23H-01 2 62066854 62066854 G A FAM161A Missense_Mutation p.P429S 0.19 deleterious(0.05) benign(0.127) TCGA-AC-A23H-01 2 62228064 62228064 C G COMMD1 Missense_Mutation p.Q137E 0.19 deleterious(0.02) possibly_damaging(0.834) TCGA-AC-A23H-01 2 63280046 63280046 G C OTX1 5'UTR 0.25 TCGA-AC-A23H-01 2 63609038 63609038 G A WDPCP Intron 0.23 TCGA-AC-A23H-01 2 64113526 64113526 C G UGP2 Missense_Mutation p.Q309E 0.24 deleterious(0) possibly_damaging(0.83) TCGA-AC-A23H-01 2 65300103 65300103 C T CEP68 Nonsense_Mutation p.Q625* 0.17 TCGA-AC-A23H-01 2 66662944 66662944 G A MEIS1 5'UTR 0.13 TCGA-AC-A23H-01 2 67637269 67637269 G A ETAA1 3'UTR 0.21 TCGA-AC-A23H-01 2 68384637 68384637 G T WDR92 5'UTR 0.18 TCGA-AC-A23H-01 2 68401923 68401923 G T PNO1 Missense_Mutation p.D250Y 0.20 deleterious(0) possibly_damaging(0.781) TCGA-AC-A23H-01 2 68408092 68408092 G C PPP3R1 3'UTR 0.19 TCGA-AC-A23H-01 2 68544272 68544272 C T CNRIP1 Intron 0.15 TCGA-AC-A23H-01 2 68772404 68772404 G T APLF Missense_Mutation p.D416Y 0.13 deleterious(0) probably_damaging(0.935) TCGA-AC-A23H-01 2 69300189 69300189 G A ANTXR1 Missense_Mutation p.D150N 0.43 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 69300195 69300195 G A ANTXR1 Missense_Mutation p.E152K 0.41 tolerated(0.71) possibly_damaging(0.699) TCGA-AC-A23H-01 2 69623385 69623385 G C NFU1 Nonsense_Mutation p.S253* 0.19 TCGA-AC-A23H-01 2 69706155 69706155 G C AAK1 Missense_Mutation p.L870V 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-AC-A23H-01 2 70015184 70015184 A T ANXA4 Splice_Site p.X4_splice 0.21 TCGA-AC-A23H-01 2 70123632 70123632 G A SNRNP27 Missense_Mutation p.E74K 0.16 tolerated(0.1) unknown(0) TCGA-AC-A23H-01 2 70124532 70124532 G A SNRNP27 Missense_Mutation p.E98K 0.09 tolerated(0.19) possibly_damaging(0.744) TCGA-AC-A23H-01 2 70377434 70377434 C T C2orf42 3'UTR 0.29 TCGA-AC-A23H-01 2 70377515 70377515 G A C2orf42 Silent p.A566A 0.17 TCGA-AC-A23H-01 2 70406733 70406733 C G C2orf42 Missense_Mutation p.E289Q 0.20 tolerated(0.18) possibly_damaging(0.463) TCGA-AC-A23H-01 2 70520779 70520779 C T SNRPG Translation_Start_Site p.M1? 0.35 tolerated(0.07) benign(0.078) TCGA-AC-A23H-01 2 70919586 70919586 C T ADD2 Silent p.A218A 0.24 TCGA-AC-A23H-01 2 71298866 71298866 C T NAGK Silent p.I134I 0.18 TCGA-AC-A23H-01 2 71305509 71305509 C T NAGK Silent p.F348F 0.19 TCGA-AC-A23H-01 2 71651097 71651097 G C ZNF638 Missense_Mutation p.D1485H 0.23 tolerated(0.09) benign(0.443) TCGA-AC-A23H-01 2 71654346 71654346 G A ZNF638 Missense_Mutation p.E1783K 0.12 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 71681040 71681040 G A DYSF 5'UTR 0.27 TCGA-AC-A23H-01 2 71747332 71747332 G C DYSF Missense_Mutation p.E343Q 0.15 tolerated(0.05) possibly_damaging(0.835) TCGA-AC-A23H-01 2 71909714 71909714 C T DYSF Silent p.F2076F 0.35 TCGA-AC-A23H-01 2 73679608 73679608 C T ALMS1 Missense_Mutation p.S1984F 0.15 benign(0.036) TCGA-AC-A23H-01 2 73747067 73747067 G A ALMS1 Silent p.Q3234Q 0.22 TCGA-AC-A23H-01 2 74141838 74141838 G C ACTG2 Missense_Mutation p.E215D 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AC-A23H-01 2 74154003 74154003 C T DGUOK 5'UTR 0.30 TCGA-AC-A23H-01 2 74273708 74273708 G C TET3 Missense_Mutation p.E87Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 2 74386337 74386337 G A MOB1A Silent p.L152L 0.22 TCGA-AC-A23H-01 2 74588664 74588664 C G DCTN1 Missense_Mutation p.E1267Q 0.14 tolerated(0.51) benign(0.008) TCGA-AC-A23H-01 2 74641993 74641993 G T C2orf81 Silent p.L410L 0.22 TCGA-AC-A23H-01 2 74655445 74655445 C T RTKN Missense_Mutation p.E346K 0.21 deleterious(0) possibly_damaging(0.566) TCGA-AC-A23H-01 2 74685657 74685657 C T WBP1 5'UTR 0.13 TCGA-AC-A23H-01 2 74708188 74708188 G C CCDC142 Silent p.L421L 0.22 TCGA-AC-A23H-01 2 74733153 74733153 G A PCGF1 Silent p.F152F 0.17 TCGA-AC-A23H-01 2 74742778 74742778 C T TLX2 Missense_Mutation p.S140F 0.17 tolerated(0.07) possibly_damaging(0.565) TCGA-AC-A23H-01 2 74781924 74781924 C T DOK1 Nonsense_Mutation p.Q15* 0.18 TCGA-AC-A23H-01 2 75347754 75347754 C G TACR1 Missense_Mutation p.R177T 0.34 tolerated(0.12) probably_damaging(0.975) TCGA-AC-A23H-01 2 75929427 75929427 C G GCFC2 Missense_Mutation p.E173Q 0.20 tolerated(0.28) benign(0.065) TCGA-AC-A23H-01 2 8437127 8437127 G C LINC00299 RNA 0.42 TCGA-AC-A23H-01 2 84821114 84821114 G A DNAH6 Missense_Mutation p.E877K 0.20 deleterious(0.05) possibly_damaging(0.673) TCGA-AC-A23H-01 2 84864427 84864427 G T DNAH6 Nonsense_Mutation p.E1583* 0.19 TCGA-AC-A23H-01 2 84881885 84881885 G C DNAH6 Missense_Mutation p.W1912C 0.18 deleterious(0) probably_damaging(0.934) TCGA-AC-A23H-01 2 84886262 84886262 G C DNAH6 Missense_Mutation p.R2018T 0.19 deleterious(0.04) possibly_damaging(0.704) TCGA-AC-A23H-01 2 84928230 84928230 G A DNAH6 Missense_Mutation p.E2610K 0.29 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 2 84972212 84972212 G C DNAH6 Missense_Mutation p.E3451Q 0.13 tolerated(0.15) benign(0.141) TCGA-AC-A23H-01 2 85768229 85768229 G C MAT2A Missense_Mutation p.D39H 0.41 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 85857906 85857906 C G USP39 Missense_Mutation p.I262M 0.21 tolerated(0.11) possibly_damaging(0.714) TCGA-AC-A23H-01 2 85892442 85892442 C G SFTPB Silent p.L226L 0.22 TCGA-AC-A23H-01 2 87017578 87017578 C G CD8A Missense_Mutation p.K92N 0.24 tolerated(0.22) benign(0.034) TCGA-AC-A23H-01 2 88056381 88056381 G A PLGLB2 3'UTR 0.06 TCGA-AC-A23H-01 2 88367479 88367479 C T SMYD1 Silent p.I32I 0.24 TCGA-AC-A23H-01 2 88422655 88422655 C T FABP1 Intron 0.16 TCGA-AC-A23H-01 2 88472577 88472577 G C THNSL2 5'UTR 0.26 TCGA-AC-A23H-01 2 89087843 89087843 G C ANKRD36BP2 RNA 0.12 TCGA-AC-A23H-01 2 89156874 89156874 C G IGKC Nonstop_Mutation p.*108Yext*59 0.18 TCGA-AC-A23H-01 2 89161591 89161591 G A IGKC 5'Flank 0.49 TCGA-AC-A23H-01 2 89399789 89399789 C T IGKV1-16 Silent p.L13L 0.18 TCGA-AC-A23H-01 2 90139143 90139143 G A IGKV1D-16 Silent p.L13L 0.06 TCGA-AC-A23H-01 2 95539262 95539262 C T TEKT4 Intron 0.15 TCGA-AC-A23H-01 2 95691625 95691625 G C MAL Missense_Mutation p.E30Q 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-AC-A23H-01 2 95942342 95942342 G A PROM2 Missense_Mutation p.E207K 0.28 tolerated(0.46) possibly_damaging(0.463) TCGA-AC-A23H-01 2 96260029 96260029 G C TRIM43 Silent p.L86L 0.09 TCGA-AC-A23H-01 2 96686892 96686892 C T GPAT2 3'Flank 0.23 TCGA-AC-A23H-01 2 96934216 96934216 G C CIAO1 Missense_Mutation p.D171H 0.42 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 2 96961280 96961280 G A SNRNP200 Silent p.I596I 0.19 TCGA-AC-A23H-01 2 96992960 96992960 C A ITPRIPL1 Silent p.L205L 0.23 TCGA-AC-A23H-01 2 97370030 97370030 C G LMAN2L 3'Flank 0.15 TCGA-AC-A23H-01 2 97378855 97378855 G C LMAN2L Missense_Mutation p.P177A 0.22 tolerated_low_confidence(0.86) benign(0.121) TCGA-AC-A23H-01 2 98196932 98196932 G A ANKRD36B RNA 0.18 TCGA-AC-A23H-01 2 98421887 98421887 G C TMEM131 Missense_Mutation p.L746V 0.17 tolerated(0.15) probably_damaging(0.98) TCGA-AC-A23H-01 2 99226339 99226339 C T UNC50 Silent p.F39F 0.26 TCGA-AC-A23H-01 2 99242246 99242246 G A MGAT4A Silent p.P507P 0.18 TCGA-AC-A23H-01 2 99634755 99634755 C G TSGA10 Missense_Mutation p.M660I 0.16 tolerated(0.09) benign(0.005) TCGA-AC-A23H-01 2 99721839 99721839 C G TSGA10 Missense_Mutation p.E148Q 0.24 tolerated(0.32) benign(0.017) TCGA-AC-A23H-01 3 100002473 100002473 G A TBC1D23 Silent p.E98E 0.18 TCGA-AC-A23H-01 3 10012309 10012309 A G EMC3 Silent p.F177F 0.11 TCGA-AC-A23H-01 3 100413810 100413810 C T GPR128 Missense_Mutation p.L787F 0.11 tolerated(0.16) benign(0.006) TCGA-AC-A23H-01 3 100570746 100570746 C G ABI3BP Missense_Mutation p.E400Q 0.17 deleterious(0.04) benign(0.013) TCGA-AC-A23H-01 3 100581182 100581182 C T ABI3BP Missense_Mutation p.D378N 0.23 tolerated(0.07) possibly_damaging(0.539) TCGA-AC-A23H-01 3 100617686 100617686 C T ABI3BP Silent p.P134P 0.13 TCGA-AC-A23H-01 3 100712274 100712274 C T ABI3BP 5'UTR 0.17 TCGA-AC-A23H-01 3 101283909 101283909 G C TRMT10C Missense_Mutation p.R95T 0.13 deleterious(0) probably_damaging(0.938) TCGA-AC-A23H-01 3 101447748 101447748 G C CEP97 Missense_Mutation p.Q138H 0.15 tolerated(0.2) benign(0.152) TCGA-AC-A23H-01 3 101535801 101535801 C G NXPE3 Nonsense_Mutation p.S362* 0.18 TCGA-AC-A23H-01 3 10261456 10261456 C A IRAK2 Silent p.I332I 0.08 TCGA-AC-A23H-01 3 10343034 10343034 C T SEC13 Missense_Mutation p.D294N 0.20 tolerated(0.1) benign(0.001) TCGA-AC-A23H-01 3 107798886 107798886 C G CD47 Missense_Mutation p.E118Q 0.17 deleterious(0.03) possibly_damaging(0.86) TCGA-AC-A23H-01 3 108074187 108074187 C T HHLA2 Missense_Mutation p.S215L 0.24 tolerated(0.08) benign(0.101) TCGA-AC-A23H-01 3 108133089 108133089 C G MYH15 Missense_Mutation p.E1399Q 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 108178212 108178212 G A MYH15 Missense_Mutation p.P693S 0.19 tolerated(0.09) benign(0.09) TCGA-AC-A23H-01 3 108211976 108211976 C T MYH15 Missense_Mutation p.V274M 0.18 deleterious(0) possibly_damaging(0.824) TCGA-AC-A23H-01 3 108276102 108276102 C T KIAA1524 Missense_Mutation p.E725K 0.16 tolerated(0.08) possibly_damaging(0.828) TCGA-AC-A23H-01 3 108344740 108344740 C T DZIP3 Nonsense_Mutation p.Q169* 0.16 TCGA-AC-A23H-01 3 108403129 108403129 C G DZIP3 Missense_Mutation p.Q984E 0.19 tolerated(0.16) benign(0.05) TCGA-AC-A23H-01 3 108626926 108626926 C T GUCA1C Silent p.E191E 0.17 TCGA-AC-A23H-01 3 108724023 108724023 G A MORC1 Missense_Mutation p.S636L 0.17 tolerated(0.06) benign(0.01) TCGA-AC-A23H-01 3 109056387 109056387 C T DPPA4 5'UTR 0.44 TCGA-AC-A23H-01 3 111693477 111693477 C G PHLDB2 3'UTR 0.16 TCGA-AC-A23H-01 3 111845837 111845837 C T GCSAM Missense_Mutation p.E65K 0.09 tolerated(0.34) benign(0.215) TCGA-AC-A23H-01 3 111886182 111886182 C T SLC9C1 Missense_Mutation p.E1084K 0.16 tolerated(0.08) possibly_damaging(0.905) TCGA-AC-A23H-01 3 111950267 111950267 C T SLC9C1 Missense_Mutation p.E505K 0.18 deleterious(0.01) possibly_damaging(0.713) TCGA-AC-A23H-01 3 112066509 112066509 C A CD200 Silent p.R201R 0.21 TCGA-AC-A23H-01 3 112255319 112255319 G A ATG3 Intron 0.19 TCGA-AC-A23H-01 3 112256647 112256647 C T ATG3 Missense_Mutation p.D201N 0.26 deleterious(0.04) benign(0.32) TCGA-AC-A23H-01 3 112648136 112648136 G C CD200R1 Missense_Mutation p.Q141E 0.14 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 3 112724377 112724377 G A C3orf17 3'UTR 0.23 TCGA-AC-A23H-01 3 112969482 112969482 G T BOC Nonsense_Mutation p.E60* 0.13 TCGA-AC-A23H-01 3 112969740 112969740 G A BOC Intron 0.30 TCGA-AC-A23H-01 3 112987229 112987229 G C BOC Missense_Mutation p.E154Q 0.16 tolerated(0.09) possibly_damaging(0.838) TCGA-AC-A23H-01 3 113010371 113010371 G C WDR52 3'UTR 0.54 TCGA-AC-A23H-01 3 113027091 113027091 G C WDR52 Nonsense_Mutation p.S1514* 0.16 TCGA-AC-A23H-01 3 113063537 113063537 C A WDR52 Missense_Mutation p.D1030Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 3 113169342 113169342 G C SPICE1 Missense_Mutation p.L722V 0.16 tolerated(0.2) benign(0.009) TCGA-AC-A23H-01 3 113503119 113503119 C T ATP6V1A Missense_Mutation p.S87F 0.32 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 3 11356878 11356878 C T ATG7 Missense_Mutation p.P197S 0.19 tolerated(0.12) benign(0.067) TCGA-AC-A23H-01 3 113659095 113659095 C G GRAMD1C Missense_Mutation p.S604C 0.24 tolerated(0.06) possibly_damaging(0.687) TCGA-AC-A23H-01 3 113672592 113672592 C G ZDHHC23 Missense_Mutation p.I69M 0.32 deleterious(0.02) possibly_damaging(0.615) TCGA-AC-A23H-01 3 113672814 113672814 C A ZDHHC23 Missense_Mutation p.S143R 0.45 deleterious(0) possibly_damaging(0.866) TCGA-AC-A23H-01 3 113684194 113684194 C G KIAA1407 Missense_Mutation p.W873C 0.28 tolerated(0.13) possibly_damaging(0.789) TCGA-AC-A23H-01 3 118621678 118621678 G A IGSF11 Missense_Mutation p.H329Y 0.15 tolerated(0.11) benign(0.081) TCGA-AC-A23H-01 3 119150818 119150818 G C TMEM39A 3'UTR 0.17 TCGA-AC-A23H-01 3 119156719 119156719 G C TMEM39A Silent p.L269L 0.11 TCGA-AC-A23H-01 3 119219549 119219549 C A TIMMDC1 Missense_Mutation p.Q68K 0.11 tolerated(0.08) benign(0.08) TCGA-AC-A23H-01 3 119219553 119219553 G C TIMMDC1 Missense_Mutation p.R69T 0.12 tolerated(0.11) benign(0.021) TCGA-AC-A23H-01 3 119325795 119325795 G C PLA1A Missense_Mutation p.G83A 0.21 tolerated(0.24) possibly_damaging(0.497) TCGA-AC-A23H-01 3 119331884 119331884 G A PLA1A Missense_Mutation p.E195K 0.17 tolerated(0.89) benign(0.085) TCGA-AC-A23H-01 3 119367224 119367224 G A POPDC2 Nonsense_Mutation p.Q298* 0.45 TCGA-AC-A23H-01 3 119462951 119462951 G A MAATS1 Missense_Mutation p.E604K 0.51 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 3 119886618 119886618 G C GPR156 Missense_Mutation p.S569C 0.45 deleterious(0.05) possibly_damaging(0.625) TCGA-AC-A23H-01 3 120957891 120957891 G C STXBP5L Missense_Mutation p.D420H 0.16 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 3 121228422 121228422 G - POLQ Frame_Shift_Del p.H649Ifs*32 0.10 TCGA-AC-A23H-01 3 121341694 121341694 C G FBXO40 Missense_Mutation p.S473C 0.22 tolerated(0.09) possibly_damaging(0.86) TCGA-AC-A23H-01 3 121410644 121410644 G A GOLGB1 Missense_Mutation p.H2523Y 0.14 possibly_damaging(0.596) TCGA-AC-A23H-01 3 121415658 121415658 G C GOLGB1 Missense_Mutation p.L1238V 0.15 probably_damaging(0.925) TCGA-AC-A23H-01 3 121417653 121417653 C G GOLGB1 Missense_Mutation p.E573Q 0.19 probably_damaging(0.997) TCGA-AC-A23H-01 3 121649779 121649779 G C SLC15A2 Missense_Mutation p.R549T 0.22 tolerated(0.77) benign(0.001) TCGA-AC-A23H-01 3 121981006 121981006 G C CASR Missense_Mutation p.R375T 0.19 tolerated(0.18) benign(0.068) TCGA-AC-A23H-01 3 122288191 122288191 C T DTX3L Silent p.L419L 0.24 TCGA-AC-A23H-01 3 122419874 122419874 G A PARP14 Missense_Mutation p.E825K 0.16 deleterious(0.02) possibly_damaging(0.813) TCGA-AC-A23H-01 3 122459193 122459193 C T HSPBAP1 Silent p.%3D 0.31 TCGA-AC-A23H-01 3 122459231 122459231 C G HSPBAP1 Missense_Mutation p.R476S 0.33 tolerated(0.58) benign(0.007) TCGA-AC-A23H-01 3 122496594 122496594 C G HSPBAP1 Missense_Mutation p.R75T 0.19 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 122634667 122634667 C G SEMA5B Missense_Mutation p.D641H 0.16 tolerated(0.07) probably_damaging(0.93) TCGA-AC-A23H-01 3 122808040 122808040 C T PDIA5 Missense_Mutation p.S23F 0.30 deleterious(0.01) possibly_damaging(0.474) TCGA-AC-A23H-01 3 123337576 123337576 T C MYLK Missense_Mutation p.K1804E 0.16 deleterious(0) probably_damaging(0.975) TCGA-AC-A23H-01 3 123674921 123674921 C G CCDC14 Silent p.L115L 0.18 TCGA-AC-A23H-01 3 123680049 123680049 G C CCDC14 Missense_Mutation p.S39W 0.18 tolerated_low_confidence(0.2) probably_damaging(0.909) TCGA-AC-A23H-01 3 123813599 123813599 C T KALRN 5'UTR 0.13 TCGA-AC-A23H-01 3 124160830 124160830 C G KALRN Silent p.L1077L 0.24 TCGA-AC-A23H-01 3 124281710 124281710 G A KALRN Silent p.L23L 0.16 TCGA-AC-A23H-01 3 124377283 124377283 G C KALRN Silent p.R105R 0.15 TCGA-AC-A23H-01 3 124431863 124431863 G C KALRN Missense_Mutation p.M1022I 0.10 deleterious(0.01) benign(0.074) TCGA-AC-A23H-01 3 124449270 124449270 G A UMPS 5'UTR 0.20 TCGA-AC-A23H-01 3 124449331 124449331 C G UMPS Missense_Mutation p.R5G 0.30 tolerated(0.39) benign(0) TCGA-AC-A23H-01 3 124692596 124692596 C T HEG1 Silent p.Q1325Q 0.15 TCGA-AC-A23H-01 3 124748267 124748267 G C HEG1 Missense_Mutation p.Q128E 0.38 deleterious_low_confidence(0) benign(0.058) TCGA-AC-A23H-01 3 124952625 124952625 C - ZNF148 Frame_Shift_Del p.R317Gfs*22 0.19 TCGA-AC-A23H-01 3 125032181 125032181 G C ZNF148 Missense_Mutation p.Q102E 0.19 tolerated(0.38) benign(0.237) TCGA-AC-A23H-01 3 125172694 125172694 C T SNX4 Missense_Mutation p.E384K 0.20 deleterious(0.01) possibly_damaging(0.806) TCGA-AC-A23H-01 3 125726002 125726002 C G SLC41A3 Missense_Mutation p.D441H 0.10 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 125734398 125734398 C G SLC41A3 Missense_Mutation p.L303F 0.15 deleterious(0.03) possibly_damaging(0.62) TCGA-AC-A23H-01 3 125874322 125874322 C A ALDH1L1 Nonsense_Mutation p.E195* 0.11 TCGA-AC-A23H-01 3 126062715 126062715 G A KLF15 Missense_Mutation p.S369L 0.25 deleterious(0.02) possibly_damaging(0.456) TCGA-AC-A23H-01 3 126071245 126071245 G A KLF15 Missense_Mutation p.S174L 0.15 tolerated(0.14) benign(0.002) TCGA-AC-A23H-01 3 126739145 126739145 C G PLXNA1 Silent p.L1332L 0.15 TCGA-AC-A23H-01 3 127358154 127358154 C T PODXL2 Missense_Mutation p.S46F 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 127379391 127379391 G T PODXL2 Nonsense_Mutation p.E174* 0.13 TCGA-AC-A23H-01 3 127642770 127642770 C G KBTBD12 Nonsense_Mutation p.S289* 0.12 TCGA-AC-A23H-01 3 127783794 127783794 C T SEC61A1 Missense_Mutation p.R231W 0.17 deleterious(0.03) probably_damaging(0.942) TCGA-AC-A23H-01 3 128200759 128200759 C G GATA2 Missense_Mutation p.C349S 0.13 deleterious(0) probably_damaging(0.966) TCGA-AC-A23H-01 3 128712060 128712060 C G KIAA1257 Missense_Mutation p.E30Q 0.17 tolerated(0.07) benign(0.3) TCGA-AC-A23H-01 3 12872969 12872969 G A CAND2 Silent p.L1127L 0.11 TCGA-AC-A23H-01 3 128749632 128749632 G C EFCC1 Missense_Mutation p.R356T 0.08 tolerated(0.06) benign(0.268) TCGA-AC-A23H-01 3 129195155 129195155 C G IFT122 Intron 0.10 TCGA-AC-A23H-01 3 12940836 12940836 G A IQSEC1 3'UTR 0.18 TCGA-AC-A23H-01 3 129816068 129816068 C G AC083906.2 3'Flank 0.18 TCGA-AC-A23H-01 3 130095532 130095532 G A COL6A5 Missense_Mutation p.E174K 0.27 tolerated(0.08) possibly_damaging(0.714) TCGA-AC-A23H-01 3 130110299 130110299 G A COL6A5 Silent p.K898K 0.38 TCGA-AC-A23H-01 3 130124489 130124489 G A COL6A5 Missense_Mutation p.A1447T 0.16 tolerated(0.54) benign(0.001) TCGA-AC-A23H-01 3 130300446 130300446 C G COL6A6 Missense_Mutation p.Q1197E 0.09 deleterious(0.03) benign(0.075) TCGA-AC-A23H-01 3 130718377 130718377 G C ATP2C1 Missense_Mutation p.E869Q 0.07 tolerated(0.15) benign(0.039) TCGA-AC-A23H-01 3 130718479 130718479 C T ATP2C1 Nonsense_Mutation p.Q903* 0.24 TCGA-AC-A23H-01 3 132209881 132209881 G C DNAJC13 Missense_Mutation p.W1203C 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 132319718 132319718 C T ACKR4 Silent p.F159F 0.09 TCGA-AC-A23H-01 3 132387769 132387769 G A UBA5 Silent p.L135L 0.31 TCGA-AC-A23H-01 3 132389877 132389877 G A UBA5 Missense_Mutation p.R188Q 0.27 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 3 132432100 132432100 C T NPHP3 Missense_Mutation p.E330K 0.10 deleterious(0.03) possibly_damaging(0.84) TCGA-AC-A23H-01 3 132435634 132435634 C G NPHP3 Missense_Mutation p.D264H 0.13 deleterious(0) probably_damaging(0.935) TCGA-AC-A23H-01 3 132435736 132435736 C G NPHP3 Missense_Mutation p.E230Q 0.13 tolerated(0.05) benign(0.354) TCGA-AC-A23H-01 3 133329973 133329973 C G TOPBP1 Missense_Mutation p.E1350Q 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 133362081 133362081 C G TOPBP1 Missense_Mutation p.E662Q 0.14 deleterious(0) benign(0.375) TCGA-AC-A23H-01 3 133472539 133472539 C G TF Nonsense_Mutation p.S106* 0.18 TCGA-AC-A23H-01 3 133497580 133497580 C G TF 3'UTR 0.16 TCGA-AC-A23H-01 3 13359139 13359139 G A NUP210 3'UTR 0.23 TCGA-AC-A23H-01 3 1337282 1337282 C T CNTN6 Intron 0.27 TCGA-AC-A23H-01 3 13407449 13407449 G A NUP210 Silent p.L643L 0.28 TCGA-AC-A23H-01 3 134278053 134278053 C A CEP63 Missense_Mutation p.H579N 0.11 tolerated(0.32) benign(0.032) TCGA-AC-A23H-01 3 13429821 13429821 G A NUP210 Silent p.I222I 0.10 TCGA-AC-A23H-01 3 134323027 134323027 C G KY Missense_Mutation p.Q460H 0.16 tolerated(0.07) possibly_damaging(0.854) TCGA-AC-A23H-01 3 135870120 135870120 C T MSL2 Missense_Mutation p.A535T 0.25 deleterious(0.01) benign(0.218) TCGA-AC-A23H-01 3 136062693 136062693 C T STAG1 Missense_Mutation p.E1143K 0.17 tolerated_low_confidence(0.13) benign(0.09) TCGA-AC-A23H-01 3 136062801 136062801 G C STAG1 Missense_Mutation p.Q1107E 0.16 tolerated(0.2) benign(0.063) TCGA-AC-A23H-01 3 136082220 136082220 G C STAG1 Silent p.L925L 0.12 TCGA-AC-A23H-01 3 13649653 13649653 C A FBLN2 Silent p.G466G 0.16 TCGA-AC-A23H-01 3 13668000 13668000 G A FBLN2 Silent p.V784V 0.24 TCGA-AC-A23H-01 3 138117362 138117362 G C MRAS Missense_Mutation p.L133F 0.11 tolerated(0.12) benign(0.015) TCGA-AC-A23H-01 3 138474622 138474622 G C PIK3CB Nonsense_Mutation p.S124* 0.23 TCGA-AC-A23H-01 3 139092190 139092190 G C COPB2 Nonsense_Mutation p.S320* 0.12 TCGA-AC-A23H-01 3 13916589 13916589 G A WNT7A Silent p.I51I 0.34 TCGA-AC-A23H-01 3 13921257 13921257 G C WNT7A Silent p.V19V 0.22 TCGA-AC-A23H-01 3 141464118 141464118 G A RNF7 Silent p.%3D 0.43 TCGA-AC-A23H-01 3 141497486 141497486 G A GRK7 Silent p.G120G 0.19 TCGA-AC-A23H-01 3 1418739 1418739 G C CNTN6 Missense_Mutation p.E716Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 14190090 14190090 C G XPC Missense_Mutation p.D798H 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 141917688 141917688 G A GK5 Nonsense_Mutation p.Q167* 0.18 TCGA-AC-A23H-01 3 14200089 14200089 C G XPC Missense_Mutation p.E432Q 0.18 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 3 142089344 142089344 C G XRN1 Missense_Mutation p.E1063Q 0.10 tolerated(0.09) benign(0.411) TCGA-AC-A23H-01 3 142274814 142274814 G C ATR Missense_Mutation p.S749C 0.16 tolerated(0.11) benign(0.002) TCGA-AC-A23H-01 3 142443451 142443451 C A TRPC1 Missense_Mutation p.S17Y 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.608) TCGA-AC-A23H-01 3 142522868 142522868 C A TRPC1 Missense_Mutation p.H603N 0.41 tolerated(0.16) benign(0.403) TCGA-AC-A23H-01 3 142537228 142537228 G C PCOLCE2 Missense_Mutation p.F399L 0.37 deleterious(0.01) benign(0.072) TCGA-AC-A23H-01 3 142720416 142720416 C G U2SURP 5'UTR 0.29 TCGA-AC-A23H-01 3 14724385 14724385 C T C3orf20 Silent p.I55I 0.20 TCGA-AC-A23H-01 3 148458784 148458784 G A AGTR1 5'UTR 0.24 TCGA-AC-A23H-01 3 148459572 148459572 C G AGTR1 Missense_Mutation p.F250L 0.18 tolerated(0.5) possibly_damaging(0.615) TCGA-AC-A23H-01 3 148558554 148558554 G C CPB1 Missense_Mutation p.K118N 0.11 tolerated(0.07) benign(0.372) TCGA-AC-A23H-01 3 148558691 148558691 G A CPB1 Missense_Mutation p.E135K 0.08 tolerated(1) benign(0.216) TCGA-AC-A23H-01 3 148577733 148577733 G A CPB1 Missense_Mutation p.E400K 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 14861604 14861604 C T FGD5 Silent p.L342L 0.25 TCGA-AC-A23H-01 3 14861645 14861645 C G FGD5 Missense_Mutation p.S356C 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A23H-01 3 148782631 148782631 G C HLTF Missense_Mutation p.S338C 0.15 tolerated(0.1) possibly_damaging(0.676) TCGA-AC-A23H-01 3 149563845 149563845 C T RNF13 Missense_Mutation p.S11L 0.31 deleterious_low_confidence(0.03) benign(0.164) TCGA-AC-A23H-01 3 150176455 150176455 G A TSC22D2 3'UTR 0.25 TCGA-AC-A23H-01 3 15055226 15055226 C T NR2C2 Missense_Mutation p.S87F 0.11 deleterious_low_confidence(0.01) benign(0.309) TCGA-AC-A23H-01 3 150690291 150690291 C G CLRN1 Missense_Mutation p.E69Q 0.22 tolerated(0.69) benign(0.026) TCGA-AC-A23H-01 3 151073779 151073779 C A MED12L Silent p.L836L 0.15 TCGA-AC-A23H-01 3 151134121 151134121 C T MED12L Nonsense_Mutation p.Q2072* 0.11 TCGA-AC-A23H-01 3 15115954 15115954 C G ZFYVE20 Missense_Mutation p.E564Q 0.15 tolerated_low_confidence(0.12) benign(0.019) TCGA-AC-A23H-01 3 15116191 15116191 G A ZFYVE20 Silent p.L485L 0.20 TCGA-AC-A23H-01 3 151163432 151163432 G C IGSF10 Nonsense_Mutation p.S1446* 0.29 TCGA-AC-A23H-01 3 15122259 15122259 G A ZFYVE20 Silent p.I297I 0.17 TCGA-AC-A23H-01 3 153839854 153839854 C T ARHGEF26 Nonsense_Mutation p.Q25* 0.15 TCGA-AC-A23H-01 3 153994016 153994016 C T DHX36 Missense_Mutation p.E991K 0.19 deleterious(0.02) possibly_damaging(0.714) TCGA-AC-A23H-01 3 154033877 154033877 C T DHX36 Missense_Mutation p.D107N 0.20 tolerated(0.31) benign(0.001) TCGA-AC-A23H-01 3 154862220 154862220 G C MME Missense_Mutation p.E464Q 0.13 tolerated(0.2) benign(0.071) TCGA-AC-A23H-01 3 155493550 155493550 C G C3orf33 Missense_Mutation p.E45Q 0.13 tolerated(0.06) probably_damaging(0.913) TCGA-AC-A23H-01 3 155571376 155571376 G A SLC33A1 Silent p.F137F 0.19 TCGA-AC-A23H-01 3 155621747 155621747 C G GMPS Missense_Mutation p.F140L 0.14 deleterious(0) possibly_damaging(0.9) TCGA-AC-A23H-01 3 156192555 156192555 G C KCNAB1 Missense_Mutation p.E202Q 0.10 tolerated(0.14) benign(0.104) TCGA-AC-A23H-01 3 15711649 15711649 C T ANKRD28 3'UTR 0.20 TCGA-AC-A23H-01 3 157213079 157213079 G T VEPH1 Silent p.L20L 0.20 TCGA-AC-A23H-01 3 15756089 15756089 C G ANKRD28 Missense_Mutation p.Q327H 0.30 tolerated(0.05) benign(0.101) TCGA-AC-A23H-01 3 15765891 15765891 C G ANKRD28 Missense_Mutation p.D231H 0.20 deleterious(0.04) benign(0.038) TCGA-AC-A23H-01 3 158320635 158320635 T C MLF1 Missense_Mutation p.V234A 0.12 tolerated(0.29) possibly_damaging(0.903) TCGA-AC-A23H-01 3 15836777 15836777 C T ANKRD28 Missense_Mutation p.D22N 0.13 deleterious(0.01) possibly_damaging(0.501) TCGA-AC-A23H-01 3 158399941 158399941 G C GFM1 Missense_Mutation p.E587Q 0.16 deleterious(0.04) possibly_damaging(0.824) TCGA-AC-A23H-01 3 158991665 158991665 C G IQCJ-SCHIP1 Intron 0.22 TCGA-AC-A23H-01 3 160132288 160132288 C T SMC4 Nonsense_Mutation p.Q419* 0.24 TCGA-AC-A23H-01 3 160156857 160156857 G A TRIM59 Nonsense_Mutation p.Q39* 0.18 TCGA-AC-A23H-01 3 16306353 16306353 C T DPH3 Missense_Mutation p.E11K 0.21 deleterious(0.04) possibly_damaging(0.573) TCGA-AC-A23H-01 3 16419302 16419302 G A RFTN1 Missense_Mutation p.S250L 0.13 tolerated(0.26) benign(0.006) TCGA-AC-A23H-01 3 164750357 164750357 G C SI Missense_Mutation p.Q897E 0.18 tolerated(0.75) benign(0.024) TCGA-AC-A23H-01 3 164907887 164907887 C G SLITRK3 Missense_Mutation p.K244N 0.21 deleterious(0) possibly_damaging(0.587) TCGA-AC-A23H-01 3 165548023 165548023 C T BCHE Missense_Mutation p.A267T 0.14 tolerated(0.1) benign(0.249) TCGA-AC-A23H-01 3 166960399 166960399 C T ZBBX Missense_Mutation p.E763K 0.13 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 3 167437922 167437922 C T PDCD10 Missense_Mutation p.M8I 0.16 tolerated(0.08) benign(0.133) TCGA-AC-A23H-01 3 169485525 169485525 C T ACTRT3 Missense_Mutation p.D272N 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-AC-A23H-01 3 169485916 169485916 G A ACTRT3 Silent p.L141L 0.19 TCGA-AC-A23H-01 3 169487268 169487268 G T ACTRT3 Nonsense_Mutation p.S14* 0.33 TCGA-AC-A23H-01 3 169492075 169492075 G T MYNN 5'UTR 0.11 TCGA-AC-A23H-01 3 169501318 169501318 G C MYNN Missense_Mutation p.E485Q 0.19 tolerated(0.14) possibly_damaging(0.59) TCGA-AC-A23H-01 3 169664174 169664174 G A RP11-379K17.4 RNA 0.21 TCGA-AC-A23H-01 3 170150448 170150448 C G CLDN11 Silent p.L176L 0.17 TCGA-AC-A23H-01 3 17051210 17051210 C T PLCL2 5'UTR 0.15 TCGA-AC-A23H-01 3 17202620 17202620 G A TBC1D5 Silent p.L763L 0.41 TCGA-AC-A23H-01 3 172046820 172046820 A T FNDC3B Missense_Mutation p.M445L 0.18 tolerated(0.46) benign(0.004) TCGA-AC-A23H-01 3 172163232 172163232 G T GHSR Missense_Mutation p.L274I 0.23 tolerated(0.69) possibly_damaging(0.669) TCGA-AC-A23H-01 3 172482234 172482234 C T ECT2 Missense_Mutation p.S412F 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A23H-01 3 172835384 172835384 C G SPATA16 Missense_Mutation p.E46D 0.09 tolerated_low_confidence(0.09) benign(0.388) TCGA-AC-A23H-01 3 173997124 173997124 G A NLGN1 Missense_Mutation p.D445N 0.13 tolerated(0.1) probably_damaging(0.941) TCGA-AC-A23H-01 3 173998872 173998872 G C NLGN1 Missense_Mutation p.E751Q 0.15 tolerated_low_confidence(0.12) benign(0.367) TCGA-AC-A23H-01 3 178928090 178928090 G A PIK3CA Silent p.L456L 0.15 TCGA-AC-A23H-01 3 178937419 178937419 G C PIK3CA Missense_Mutation p.D603H 0.14 deleterious(0) probably_damaging(0.926) TCGA-AC-A23H-01 3 178951910 178951910 C G PIK3CA Missense_Mutation p.L989V 0.14 deleterious(0.03) possibly_damaging(0.822) TCGA-AC-A23H-01 3 178984713 178984713 G C KCNMB3 5'UTR 0.20 TCGA-AC-A23H-01 3 179341945 179341945 C A NDUFB5 3'UTR 0.20 TCGA-AC-A23H-01 3 179537670 179537670 A C PEX5L Missense_Mutation p.V306G 0.17 tolerated(0.18) benign(0.065) TCGA-AC-A23H-01 3 179754489 179754489 C T PEX5L 5'UTR 0.23 TCGA-AC-A23H-01 3 180334334 180334334 G T CCDC39 Silent p.I852I 0.17 TCGA-AC-A23H-01 3 180334472 180334472 G A CCDC39 Silent p.L806L 0.19 TCGA-AC-A23H-01 3 180693125 180693125 G A FXR1 Missense_Mutation p.R543K 0.29 deleterious_low_confidence(0) benign(0.008) TCGA-AC-A23H-01 3 182665365 182665365 G C DCUN1D1 Missense_Mutation p.F192L 0.14 tolerated(0.36) benign(0.018) TCGA-AC-A23H-01 3 182871508 182871508 C G LAMP3 Missense_Mutation p.E241Q 0.15 tolerated(0.08) probably_damaging(0.979) TCGA-AC-A23H-01 3 182987776 182987776 C G B3GNT5 Missense_Mutation p.L64V 0.15 tolerated(0.54) benign(0.001) TCGA-AC-A23H-01 3 183217570 183217570 C T KLHL6 Missense_Mutation p.E319K 0.22 deleterious(0) possibly_damaging(0.837) TCGA-AC-A23H-01 3 183381421 183381421 C G KLHL24 Missense_Mutation p.L366V 0.19 tolerated(0.1) benign(0.141) TCGA-AC-A23H-01 3 183772651 183772651 C T HTR3C Silent p.F70F 0.16 TCGA-AC-A23H-01 3 183818345 183818345 C T HTR3E Missense_Mutation p.S62L 0.20 deleterious(0.03) benign(0.104) TCGA-AC-A23H-01 3 183854397 183854397 C T EIF2B5 Intron 0.16 TCGA-AC-A23H-01 3 183967551 183967551 C G ECE2 Silent p.V23V 0.21 TCGA-AC-A23H-01 3 183975437 183975437 G C ECE2 Missense_Mutation p.D125H 0.12 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-AC-A23H-01 3 184059508 184059508 C G FAM131A Intron 0.20 TCGA-AC-A23H-01 3 184069895 184069895 C T CLCN2 Nonsense_Mutation p.W774* 0.20 TCGA-AC-A23H-01 3 184106461 184106461 G C CHRD Missense_Mutation p.E881Q 0.09 tolerated(0.05) possibly_damaging(0.697) TCGA-AC-A23H-01 3 184295792 184295792 C T EPHB3 Silent p.L582L 0.16 TCGA-AC-A23H-01 3 184429378 184429378 G C MAGEF1 Missense_Mutation p.R78G 0.22 tolerated(0.1) probably_damaging(0.931) TCGA-AC-A23H-01 3 184637936 184637936 G C VPS8 Missense_Mutation p.D802H 0.13 deleterious(0.02) probably_damaging(0.914) TCGA-AC-A23H-01 3 184769942 184769942 C A VPS8 3'UTR 0.32 TCGA-AC-A23H-01 3 184909991 184909991 G T EHHADH 3'UTR 0.23 TCGA-AC-A23H-01 3 184910076 184910076 G C EHHADH Missense_Mutation p.Q704E 0.24 tolerated(1) benign(0.056) TCGA-AC-A23H-01 3 185155363 185155363 G A MAP3K13 Missense_Mutation p.E202K 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 3 185304285 185304285 G A SENP2 Silent p.K28K 0.13 TCGA-AC-A23H-01 3 185363397 185363397 C T IGF2BP2 Silent p.K574K 0.24 TCGA-AC-A23H-01 3 185655764 185655764 C T TRA2B 5'UTR 0.41 TCGA-AC-A23H-01 3 185906092 185906092 C A DGKG Missense_Mutation p.G665V 0.39 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 186330920 186330920 C G AHSG 5'UTR 0.19 TCGA-AC-A23H-01 3 186389574 186389574 G C HRG Missense_Mutation p.R185T 0.16 deleterious(0.05) benign(0.227) TCGA-AC-A23H-01 3 186394974 186394974 G A HRG Missense_Mutation p.E294K 0.16 tolerated(0.97) benign(0) TCGA-AC-A23H-01 3 186506941 186506941 G T EIF4A2 Missense_Mutation p.R369S 0.20 deleterious(0.01) benign(0.059) TCGA-AC-A23H-01 3 186507946 186507946 G A RFC4 Silent p.I327I 0.16 TCGA-AC-A23H-01 3 186793493 186793493 G A ST6GAL1 Missense_Mutation p.E375K 0.20 probably_damaging(1) TCGA-AC-A23H-01 3 186838938 186838938 G C RPL39L Missense_Mutation p.L51V 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-AC-A23H-01 3 186954135 186954135 C A MASP1 Silent p.V508V 0.21 TCGA-AC-A23H-01 3 188592393 188592393 G A LPP 3'UTR 0.29 TCGA-AC-A23H-01 3 189598091 189598091 C G TP63 Intron 0.19 TCGA-AC-A23H-01 3 189706747 189706747 C G LEPREL1 Missense_Mutation p.E302Q 0.22 deleterious(0.02) probably_damaging(0.98) TCGA-AC-A23H-01 3 190573453 190573453 G A GMNC Silent p.L212L 0.18 TCGA-AC-A23H-01 3 191861773 191861773 G C FGF12 3'UTR 0.13 TCGA-AC-A23H-01 3 192635513 192635513 G A MB21D2 Silent p.L39L 0.16 TCGA-AC-A23H-01 3 194063112 194063112 C A CPN2 Missense_Mutation p.S107I 0.18 deleterious(0) possibly_damaging(0.877) TCGA-AC-A23H-01 3 194063182 194063182 G A CPN2 Nonsense_Mutation p.Q84* 0.26 TCGA-AC-A23H-01 3 194117360 194117360 C T GP5 Missense_Mutation p.R551Q 0.14 tolerated(0.09) benign(0.035) TCGA-AC-A23H-01 3 194309141 194309141 C T TMEM44 3'UTR 0.13 TCGA-AC-A23H-01 3 194373529 194373529 C G LSG1 Missense_Mutation p.E368Q 0.21 tolerated(0.1) possibly_damaging(0.742) TCGA-AC-A23H-01 3 195391008 195391008 C A SDHAP2 RNA 0.15 TCGA-AC-A23H-01 3 195452870 195452870 G A MUC20 Missense_Mutation p.E466K 0.26 tolerated(0.08) unknown(0) TCGA-AC-A23H-01 3 195953910 195953910 G C SLC51A Missense_Mutation p.E70Q 0.16 deleterious(0.02) benign(0.382) TCGA-AC-A23H-01 3 196089178 196089178 C T UBXN7 Silent p.G405G 0.19 TCGA-AC-A23H-01 3 196434662 196434662 C G CEP19 Missense_Mutation p.Q88H 0.18 tolerated(0.55) possibly_damaging(0.896) TCGA-AC-A23H-01 3 196663913 196663913 C G NCBP2 Missense_Mutation p.G147A 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-AC-A23H-01 3 196730704 196730704 C T MFI2 Intron 0.14 TCGA-AC-A23H-01 3 197409354 197409354 G A KIAA0226 Missense_Mutation p.H705Y 0.42 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 3 197562688 197562688 C T LRCH3 Missense_Mutation p.H416Y 0.20 tolerated(0.73) benign(0.005) TCGA-AC-A23H-01 3 197616357 197616357 G C IQCG 3'UTR 0.43 TCGA-AC-A23H-01 3 197804087 197804087 C T ANKRD18DP RNA 0.14 TCGA-AC-A23H-01 3 20156413 20156413 C G KAT2B Missense_Mutation p.N361K 0.14 deleterious(0.01) benign(0.197) TCGA-AC-A23H-01 3 20168996 20168996 C T KAT2B Silent p.F568F 0.16 TCGA-AC-A23H-01 3 23631346 23631346 G A UBE2E2 3'UTR 0.21 TCGA-AC-A23H-01 3 23929154 23929154 C T UBE2E1 Silent p.I100I 0.11 TCGA-AC-A23H-01 3 25665837 25665837 G A TOP2B Missense_Mutation p.H811Y 0.16 tolerated(0.16) possibly_damaging(0.574) TCGA-AC-A23H-01 3 25670621 25670621 G A TOP2B Missense_Mutation p.H564Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 3 25671813 25671813 G - TOP2B Frame_Shift_Del p.S513Ffs*11 0.16 TCGA-AC-A23H-01 3 25674016 25674016 G A TOP2B Missense_Mutation p.S391F 0.15 deleterious(0) probably_damaging(0.975) TCGA-AC-A23H-01 3 25831416 25831416 C G OXSM 5'Flank 0.17 TCGA-AC-A23H-01 3 26751871 26751871 C T LRRC3B Silent p.L236L 0.17 TCGA-AC-A23H-01 3 27233674 27233674 G C NEK10 Nonsense_Mutation p.S784* 0.18 TCGA-AC-A23H-01 3 27450961 27450961 G A SLC4A7 Silent p.F600F 0.21 TCGA-AC-A23H-01 3 27473043 27473043 C G SLC4A7 Missense_Mutation p.R290T 0.12 tolerated(0.27) possibly_damaging(0.622) TCGA-AC-A23H-01 3 27478002 27478002 C T SLC4A7 Missense_Mutation p.D147N 0.20 tolerated(0.22) benign(0.145) TCGA-AC-A23H-01 3 27758876 27758876 C G EOMES Missense_Mutation p.Q582H 0.23 tolerated(0.22) probably_damaging(0.962) TCGA-AC-A23H-01 3 28454653 28454653 C T ZCWPW2 Nonsense_Mutation p.Q32* 0.23 TCGA-AC-A23H-01 3 30903144 30903144 C G GADL1 Missense_Mutation p.E51Q 0.11 tolerated(0.26) benign(0.012) TCGA-AC-A23H-01 3 3111869 3111869 G A IL5RA 3'UTR 0.52 TCGA-AC-A23H-01 3 3139570 3139570 A G IL5RA Silent p.F231F 0.09 TCGA-AC-A23H-01 3 3139598 3139598 G C IL5RA Missense_Mutation p.S222C 0.47 deleterious(0) possibly_damaging(0.617) TCGA-AC-A23H-01 3 31725465 31725465 G A OSBPL10 Missense_Mutation p.L463F 0.20 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 3 32570035 32570035 C G DYNC1LI1 Missense_Mutation p.K455N 0.44 deleterious(0.02) benign(0.12) TCGA-AC-A23H-01 3 32576114 32576114 G A DYNC1LI1 Missense_Mutation p.S286L 0.19 deleterious(0) probably_damaging(0.939) TCGA-AC-A23H-01 3 32578551 32578551 C T DYNC1LI1 Missense_Mutation p.E262K 0.18 deleterious(0) possibly_damaging(0.897) TCGA-AC-A23H-01 3 32769303 32769303 C G CNOT10 Missense_Mutation p.H446D 0.14 deleterious(0.03) probably_damaging(0.96) TCGA-AC-A23H-01 3 33195183 33195183 G C SUSD5 Missense_Mutation p.T314S 0.36 tolerated(0.17) benign(0.043) TCGA-AC-A23H-01 3 35748557 35748557 G T ARPP21 Missense_Mutation p.D260Y 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 3 36899234 36899234 G C TRANK1 Missense_Mutation p.S616C 0.28 tolerated(0.07) benign(0.289) TCGA-AC-A23H-01 3 37034113 37034113 C G EPM2AIP1 Missense_Mutation p.Q152H 0.19 tolerated(0.07) benign(0.018) TCGA-AC-A23H-01 3 37034166 37034166 C G EPM2AIP1 Missense_Mutation p.E135Q 0.14 deleterious(0.03) possibly_damaging(0.739) TCGA-AC-A23H-01 3 37053508 37053508 G A MLH1 Missense_Mutation p.E199K 0.16 deleterious(0.01) possibly_damaging(0.616) TCGA-AC-A23H-01 3 38049301 38049301 G C PLCD1 Nonsense_Mutation p.S766* 0.17 TCGA-AC-A23H-01 3 38050068 38050068 C T PLCD1 Missense_Mutation p.D616N 0.09 tolerated(0.11) possibly_damaging(0.529) TCGA-AC-A23H-01 3 38354926 38354926 C T SLC22A14 Silent p.F371F 0.19 TCGA-AC-A23H-01 3 38651376 38651376 G A SCN5A Silent p.L261L 0.20 TCGA-AC-A23H-01 3 38740041 38740041 G C SCN10A Missense_Mutation p.S1557C 0.18 deleterious(0) probably_damaging(0.972) TCGA-AC-A23H-01 3 38805036 38805036 G C SCN10A Missense_Mutation p.F217L 0.47 tolerated(0.07) probably_damaging(0.998) TCGA-AC-A23H-01 3 3886257 3886257 C T LRRN1 5'UTR 0.22 TCGA-AC-A23H-01 3 39150702 39150702 G C TTC21A Missense_Mutation p.E52Q 0.15 tolerated(0.17) probably_damaging(0.973) TCGA-AC-A23H-01 3 39166649 39166649 G C TTC21A Missense_Mutation p.E405Q 0.18 tolerated(0.27) benign(0.005) TCGA-AC-A23H-01 3 40433378 40433378 G A ENTPD3 Intron 0.22 TCGA-AC-A23H-01 3 40528997 40528997 C T ZNF619 Silent p.I372I 0.52 TCGA-AC-A23H-01 3 41949345 41949345 G C ULK4 Missense_Mutation p.L392V 0.22 tolerated(0.3) benign(0.005) TCGA-AC-A23H-01 3 42233068 42233068 G C TRAK1 Missense_Mutation p.E237Q 0.12 deleterious(0) possibly_damaging(0.77) TCGA-AC-A23H-01 3 42233127 42233127 G C TRAK1 Silent p.L256L 0.13 TCGA-AC-A23H-01 3 42251618 42251618 G A TRAK1 Intron 0.20 TCGA-AC-A23H-01 3 42299583 42299583 G - CCK 3'UTR 0.11 TCGA-AC-A23H-01 3 42448401 42448401 G C LYZL4 Missense_Mutation p.Q77E 0.36 deleterious(0) possibly_damaging(0.833) TCGA-AC-A23H-01 3 42610512 42610512 C G SEC22C Silent p.V9V 0.21 TCGA-AC-A23H-01 3 42793468 42793468 C G CCDC13 Missense_Mutation p.G188A 0.30 tolerated(0.1) possibly_damaging(0.542) TCGA-AC-A23H-01 3 42915919 42915919 C G CYP8B1 Missense_Mutation p.E464Q 0.33 deleterious(0.02) possibly_damaging(0.873) TCGA-AC-A23H-01 3 42950311 42950311 C G ZNF662 Missense_Mutation p.L81V 0.59 tolerated(0.44) probably_damaging(0.996) TCGA-AC-A23H-01 3 43097860 43097860 C T FAM198A Silent p.F570F 0.10 TCGA-AC-A23H-01 3 439920 439920 C T CHL1 Silent p.I1035I 0.18 TCGA-AC-A23H-01 3 44285841 44285841 G A TOPAZ1 Missense_Mutation p.D615N 0.23 tolerated(0.12) benign(0.212) TCGA-AC-A23H-01 3 4452578 4452578 G A SUMF1 Missense_Mutation p.H309Y 0.15 tolerated(0.43) benign(0.002) TCGA-AC-A23H-01 3 44598653 44598653 G C ZKSCAN7 Missense_Mutation p.Q38H 0.07 tolerated(0.08) benign(0.001) TCGA-AC-A23H-01 3 44673650 44673650 C G ZNF197 Missense_Mutation p.Q202E 0.28 tolerated(0.44) probably_damaging(0.93) TCGA-AC-A23H-01 3 44700638 44700638 G C ZNF35 Missense_Mutation p.Q261H 0.29 tolerated(0.09) probably_damaging(0.988) TCGA-AC-A23H-01 3 44854636 44854636 G T KIF15 Nonsense_Mutation p.E783* 0.21 TCGA-AC-A23H-01 3 44943376 44943376 G T TGM4 Silent p.V308V 0.10 TCGA-AC-A23H-01 3 44952809 44952809 C T TGM4 Silent p.I608I 0.14 TCGA-AC-A23H-01 3 44955191 44955191 C G TGM4 Missense_Mutation p.Q677E 0.11 tolerated(1) benign(0.012) TCGA-AC-A23H-01 3 45127284 45127284 G A CDCP1 Missense_Mutation p.A786V 0.08 tolerated(0.26) benign(0.005) TCGA-AC-A23H-01 3 45801403 45801403 C G SLC6A20 Silent p.L525L 0.25 TCGA-AC-A23H-01 3 45988056 45988056 A G CXCR6 Missense_Mutation p.Q28R 0.08 tolerated(0.51) benign(0) TCGA-AC-A23H-01 3 46450096 46450096 G A CCRL2 Missense_Mutation p.D188N 0.13 tolerated(0.57) benign(0.025) TCGA-AC-A23H-01 3 46875149 46875149 G C PRSS42 Missense_Mutation p.L78V 0.21 tolerated(1) benign(0.05) TCGA-AC-A23H-01 3 47163754 47163754 G T SETD2 Nonsense_Mutation p.S791* 0.08 TCGA-AC-A23H-01 3 47451182 47451182 G A PTPN23 Missense_Mutation p.E663K 0.20 unknown(0) TCGA-AC-A23H-01 3 47462167 47462167 C G SCAP Silent p.V480V 0.22 TCGA-AC-A23H-01 3 47604016 47604016 C T CSPG5 3'UTR 0.13 TCGA-AC-A23H-01 3 48493235 48493235 G A ATRIP Missense_Mutation p.R161K 0.23 tolerated(0.24) benign(0.009) TCGA-AC-A23H-01 3 48501607 48501607 G C ATRIP Missense_Mutation p.G385A 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-AC-A23H-01 3 48623527 48623527 G A COL7A1 Nonsense_Mutation p.Q1235* 0.33 TCGA-AC-A23H-01 3 48719798 48719798 C G NCKIPSD Missense_Mutation p.D157H 0.12 deleterious(0.01) possibly_damaging(0.633) TCGA-AC-A23H-01 3 48936159 48936159 G T SLC25A20 Nonsense_Mutation p.C23* 0.22 TCGA-AC-A23H-01 3 49028331 49028331 C G P4HTM Silent p.L140L 0.21 TCGA-AC-A23H-01 3 49049714 49049714 G A WDR6 Silent p.Q279Q 0.16 TCGA-AC-A23H-01 3 49051823 49051823 C G WDR6 Missense_Mutation p.L922V 0.14 tolerated(0.6) benign(0.005) TCGA-AC-A23H-01 3 49081898 49081898 C A QRICH1 Missense_Mutation p.D571Y 0.54 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 49133479 49133479 C G QARS Missense_Mutation p.D771H 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 49135466 49135466 G C QARS Missense_Mutation p.L746V 0.23 tolerated(0.56) benign(0.029) TCGA-AC-A23H-01 3 49136834 49136834 G T QARS Silent p.L519L 0.19 TCGA-AC-A23H-01 3 49138812 49138812 G C QARS Missense_Mutation p.I284M 0.56 tolerated(0.31) probably_damaging(1) TCGA-AC-A23H-01 3 49155246 49155246 G C USP19 Missense_Mutation p.H106D 0.10 tolerated_low_confidence(0.44) benign(0) TCGA-AC-A23H-01 3 49349010 49349010 G A USP4 Missense_Mutation p.S258F 0.15 deleterious(0.01) benign(0.013) TCGA-AC-A23H-01 3 49693646 49693646 G T BSN Missense_Mutation p.M2219I 0.10 unknown(0) TCGA-AC-A23H-01 3 49694559 49694559 G A BSN Missense_Mutation p.E2524K 0.14 unknown(0) TCGA-AC-A23H-01 3 49698846 49698846 G C BSN Missense_Mutation p.E3190Q 0.13 unknown(0) TCGA-AC-A23H-01 3 49699135 49699135 G A BSN Missense_Mutation p.R3286K 0.13 unknown(0) TCGA-AC-A23H-01 3 49739544 49739544 G A RNF123 Silent p.L508L 0.16 TCGA-AC-A23H-01 3 50220387 50220387 G A SEMA3F Silent p.L318L 0.18 TCGA-AC-A23H-01 3 50324238 50324238 C T LSMEM2 Silent p.L102L 0.19 TCGA-AC-A23H-01 3 50324283 50324283 C G LSMEM2 Silent p.V117V 0.16 TCGA-AC-A23H-01 3 50336726 50336726 C T NAT6 5'UTR 0.17 TCGA-AC-A23H-01 3 50357750 50357750 C G HYAL2 Silent p.L57L 0.25 TCGA-AC-A23H-01 3 50363862 50363862 C A TUSC2 Nonsense_Mutation p.E65* 0.14 TCGA-AC-A23H-01 3 50388170 50388170 C T NPRL2 5'UTR 0.22 TCGA-AC-A23H-01 3 50608743 50608743 C T HEMK1 Missense_Mutation p.H70Y 0.22 tolerated(0.13) benign(0.272) TCGA-AC-A23H-01 3 51347742 51347742 G C DOCK3 Missense_Mutation p.R1001T 0.22 deleterious(0) benign(0.357) TCGA-AC-A23H-01 3 51450817 51450817 C T VPRBP Missense_Mutation p.D890N 0.14 tolerated(0.11) benign(0.376) TCGA-AC-A23H-01 3 51624396 51624396 G C RAD54L2 5'UTR 0.23 TCGA-AC-A23H-01 3 51895685 51895685 G A IQCF2 Translation_Start_Site p.M1? 0.22 deleterious(0.04) probably_damaging(0.98) TCGA-AC-A23H-01 3 51969380 51969380 G A RRP9 Nonsense_Mutation p.Q317* 0.56 TCGA-AC-A23H-01 3 51979013 51979013 G A PARP3 Splice_Site p.X219_splice 0.28 TCGA-AC-A23H-01 3 52236561 52236561 G A ALAS1 Missense_Mutation p.D80N 0.28 tolerated_low_confidence(0.62) benign(0.068) TCGA-AC-A23H-01 3 52290602 52290602 C G WDR82 3'UTR 0.14 TCGA-AC-A23H-01 3 52366410 52366410 C T DNAH1 Missense_Mutation p.S429L 0.12 benign(0) TCGA-AC-A23H-01 3 52400802 52400802 C T DNAH1 Silent p.I1888I 0.24 TCGA-AC-A23H-01 3 52406972 52406972 G A DNAH1 Silent p.L2296L 0.32 TCGA-AC-A23H-01 3 52456828 52456828 G C PHF7 Missense_Mutation p.D284H 0.20 tolerated(0.12) benign(0.352) TCGA-AC-A23H-01 3 52505964 52505964 G A NISCH Missense_Mutation p.D182N 0.34 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 3 52621381 52621381 G A PBRM1 Silent p.V1012V 0.11 TCGA-AC-A23H-01 3 52621452 52621452 C G PBRM1 Splice_Site p.X989_splice 0.16 TCGA-AC-A23H-01 3 52728250 52728250 G A GNL3 Missense_Mutation p.E537K 0.11 tolerated(0.31) benign(0.006) TCGA-AC-A23H-01 3 52964402 52964402 T A SFMBT1 Missense_Mutation p.K280N 0.30 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 53138048 53138048 C T RFT1 Silent p.L341L 0.30 TCGA-AC-A23H-01 3 53809980 53809980 G A CACNA1D Missense_Mutation p.E1444K 0.27 tolerated(0.15) benign(0.423) TCGA-AC-A23H-01 3 53894240 53894240 C G IL17RB Missense_Mutation p.L311V 0.16 tolerated(0.07) benign(0.037) TCGA-AC-A23H-01 3 53925802 53925802 G C SELK Missense_Mutation p.S5W 0.22 deleterious(0) possibly_damaging(0.879) TCGA-AC-A23H-01 3 54354556 54354556 A T CACNA2D3 Missense_Mutation p.M98L 0.16 deleterious(0.01) benign(0.022) TCGA-AC-A23H-01 3 54420747 54420747 G A CACNA2D3 Silent p.L109L 0.09 TCGA-AC-A23H-01 3 54962019 54962019 G C LRTM1 5'UTR 0.13 TCGA-AC-A23H-01 3 56657553 56657553 G C FAM208A 3'UTR 0.20 TCGA-AC-A23H-01 3 56667448 56667448 G A FAM208A Missense_Mutation p.S1124F 0.14 deleterious(0.02) possibly_damaging(0.622) TCGA-AC-A23H-01 3 56771351 56771351 G C ARHGEF3 Missense_Mutation p.I333M 0.20 deleterious(0.02) benign(0.29) TCGA-AC-A23H-01 3 56789060 56789060 G A ARHGEF3 Silent p.F140F 0.20 TCGA-AC-A23H-01 3 57135267 57135267 C G IL17RD Missense_Mutation p.Q368H 0.20 tolerated(0.14) probably_damaging(0.923) TCGA-AC-A23H-01 3 57144296 57144296 C A IL17RD Silent p.L118L 0.17 TCGA-AC-A23H-01 3 57303883 57303883 G C APPL1 3'UTR 0.21 TCGA-AC-A23H-01 3 57321935 57321935 G A ASB14 Missense_Mutation p.L155F 0.19 tolerated(0.1) benign(0.021) TCGA-AC-A23H-01 3 57443481 57443481 C G DNAH12 Silent p.R1078R 0.19 TCGA-AC-A23H-01 3 57898407 57898407 G C SLMAP Missense_Mutation p.E633Q 0.15 deleterious_low_confidence(0.04) benign(0.211) TCGA-AC-A23H-01 3 57994454 57994454 G C FLNB Missense_Mutation p.E55Q 0.10 deleterious(0) probably_damaging(0.924) TCGA-AC-A23H-01 3 58520106 58520106 C T ACOX2 Missense_Mutation p.E102K 0.25 deleterious(0.02) possibly_damaging(0.792) TCGA-AC-A23H-01 3 58728291 58728291 C G C3orf67 Missense_Mutation p.D530H 0.11 deleterious(0.03) probably_damaging(0.914) TCGA-AC-A23H-01 3 58849331 58849331 C G C3orf67 Missense_Mutation p.D391H 0.12 deleterious(0.03) probably_damaging(0.967) TCGA-AC-A23H-01 3 62216898 62216898 G C PTPRG Splice_Site p.X763_splice 0.17 TCGA-AC-A23H-01 3 62254775 62254775 G A PTPRG Silent p.L980L 0.19 TCGA-AC-A23H-01 3 62355759 62355759 C T FEZF2 Silent p.%3D 0.36 TCGA-AC-A23H-01 3 62355847 62355847 C G FEZF2 Missense_Mutation p.D431H 0.31 deleterious(0.04) probably_damaging(0.988) TCGA-AC-A23H-01 3 62357788 62357788 C G FEZF2 Silent p.L252L 0.38 TCGA-AC-A23H-01 3 62463956 62463956 C G CADPS Missense_Mutation p.M1103I 0.16 deleterious(0) benign(0.001) TCGA-AC-A23H-01 3 64592688 64592688 G A ADAMTS9 Missense_Mutation p.S1141L 0.18 tolerated(0.1) possibly_damaging(0.597) TCGA-AC-A23H-01 3 64640042 64640042 C A ADAMTS9 Nonsense_Mutation p.E435* 0.38 TCGA-AC-A23H-01 3 65342189 65342189 C G MAGI1 Missense_Mutation p.R1418T 0.12 tolerated_low_confidence(0.1) unknown(0) TCGA-AC-A23H-01 3 65342317 65342317 C G MAGI1 Missense_Mutation p.E1375D 0.34 tolerated_low_confidence(0.42) unknown(0) TCGA-AC-A23H-01 3 67054247 67054247 G A KBTBD8 Missense_Mutation p.E286K 0.16 deleterious(0.01) probably_damaging(0.925) TCGA-AC-A23H-01 3 68593647 68593647 G A FAM19A1 Missense_Mutation p.R132K 0.08 tolerated_low_confidence(0.36) benign(0.01) TCGA-AC-A23H-01 3 69047243 69047243 G C EOGT Missense_Mutation p.F250L 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-AC-A23H-01 3 69097500 69097500 G A TMF1 Missense_Mutation p.P119L 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AC-A23H-01 3 69168802 69168802 G A LMOD3 Missense_Mutation p.S235L 0.26 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 69236982 69236982 C G FRMD4B Missense_Mutation p.E620Q 0.16 tolerated(0.12) possibly_damaging(0.744) TCGA-AC-A23H-01 3 69928332 69928332 C T MITF Missense_Mutation p.S51F 0.20 deleterious(0.02) probably_damaging(0.931) TCGA-AC-A23H-01 3 71733799 71733799 C T EIF4E3 3'UTR 0.27 TCGA-AC-A23H-01 3 72427764 72427764 C G RYBP Missense_Mutation p.R242S 0.20 deleterious(0) possibly_damaging(0.765) TCGA-AC-A23H-01 3 72427768 72427768 T C RYBP Missense_Mutation p.D241G 0.12 deleterious(0) possibly_damaging(0.908) TCGA-AC-A23H-01 3 72799653 72799653 C T SHQ1 Missense_Mutation p.D506N 0.12 tolerated_low_confidence(0.94) benign(0.002) TCGA-AC-A23H-01 3 72891482 72891482 G C SHQ1 Missense_Mutation p.L94V 0.11 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 3 73112849 73112849 C G PPP4R2 Missense_Mutation p.R149G 0.09 deleterious(0.02) possibly_damaging(0.642) TCGA-AC-A23H-01 3 73114211 73114211 C T PPP4R2 Nonsense_Mutation p.Q283* 0.44 TCGA-AC-A23H-01 3 73114826 73114826 G A PPP4R2 Missense_Mutation p.D403N 0.10 tolerated(0.77) benign(0.006) TCGA-AC-A23H-01 3 74350693 74350693 C T CNTN3 Missense_Mutation p.E651K 0.11 deleterious(0) possibly_damaging(0.648) TCGA-AC-A23H-01 3 96706413 96706413 C T EPHA6 Silent p.H230H 0.13 TCGA-AC-A23H-01 3 9695347 9695347 G C MTMR14 Missense_Mutation p.D68H 0.11 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 3 97662279 97662279 G A CRYBG3 3'UTR 0.15 TCGA-AC-A23H-01 3 9775840 9775840 G C BRPF1 Missense_Mutation p.D6H 0.07 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 3 9791929 9791929 C G OGG1 5'UTR 0.23 TCGA-AC-A23H-01 3 97983947 97983947 C T OR5H6 Silent p.F273F 0.14 TCGA-AC-A23H-01 3 98250987 98250987 C G GPR15 Missense_Mutation p.P37R 0.20 deleterious(0) possibly_damaging(0.889) TCGA-AC-A23H-01 3 9934815 9934815 C G JAGN1 Silent p.L102L 0.44 TCGA-AC-A23H-01 4 100257925 100257925 G A ADH1C Missense_Mutation p.T371I 0.22 probably_damaging(0.943) TCGA-AC-A23H-01 4 100738004 100738004 C T DAPP1 5'UTR 0.16 TCGA-AC-A23H-01 4 100738135 100738135 G C DAPP1 Missense_Mutation p.R22T 0.41 tolerated_low_confidence(0.64) benign(0.001) TCGA-AC-A23H-01 4 100756830 100756830 C G DAPP1 Nonsense_Mutation p.S51* 0.24 TCGA-AC-A23H-01 4 103522112 103522112 C G NFKB1 Silent p.V566V 0.18 TCGA-AC-A23H-01 4 103947351 103947351 G C SLC9B2 3'UTR 0.29 TCGA-AC-A23H-01 4 104065686 104065686 C G CENPE Missense_Mutation p.L1649F 0.22 benign(0.033) TCGA-AC-A23H-01 4 104070123 104070123 G A CENPE Missense_Mutation p.H1241Y 0.19 benign(0.021) TCGA-AC-A23H-01 4 106473871 106473871 C T ARHGEF38 5'UTR 0.39 TCGA-AC-A23H-01 4 106879666 106879666 G C NPNT Missense_Mutation p.E430Q 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-AC-A23H-01 4 109674095 109674095 C T ETNPPL Missense_Mutation p.E192K 0.46 deleterious(0.03) possibly_damaging(0.58) TCGA-AC-A23H-01 4 110384067 110384067 G A SEC24B Silent p.Q48Q 0.14 TCGA-AC-A23H-01 4 110415770 110415770 G T SEC24B Splice_Site p.X416_splice 0.18 TCGA-AC-A23H-01 4 110834469 110834469 G C EGF 5'UTR 0.23 TCGA-AC-A23H-01 4 110866276 110866276 C G EGF Nonsense_Mutation p.S262* 0.24 TCGA-AC-A23H-01 4 110972499 110972499 C T ELOVL6 Missense_Mutation p.E265K 0.26 tolerated(0.2) benign(0) TCGA-AC-A23H-01 4 111398053 111398053 C G ENPEP Missense_Mutation p.F161L 0.41 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 4 113199140 113199140 G A TIFA Missense_Mutation p.P145S 0.31 tolerated(0.51) benign(0.011) TCGA-AC-A23H-01 4 113460742 113460742 C G C4orf21 Missense_Mutation p.K2092N 0.20 deleterious(0.02) unknown(0) TCGA-AC-A23H-01 4 113502847 113502847 C T C4orf21 Silent p.R1470R 0.18 TCGA-AC-A23H-01 4 113541344 113541344 C T C4orf21 Silent p.V55V 0.57 TCGA-AC-A23H-01 4 113565847 113565847 C T LARP7 Nonsense_Mutation p.Q15* 0.18 TCGA-AC-A23H-01 4 114095592 114095592 C T ANK2 Silent p.F35F 0.33 TCGA-AC-A23H-01 4 114264272 114264272 G A ANK2 Missense_Mutation p.E1408K 0.24 probably_damaging(0.999) TCGA-AC-A23H-01 4 114277642 114277642 C A ANK2 Missense_Mutation p.S2623Y 0.14 possibly_damaging(0.785) TCGA-AC-A23H-01 4 115544064 115544064 C G UGT8 Missense_Mutation p.L10V 0.20 tolerated(0.2) benign(0.192) TCGA-AC-A23H-01 4 115544204 115544204 C G UGT8 Silent p.L56L 0.25 TCGA-AC-A23H-01 4 1161404 1161404 C G SPON2 Silent p.S284S 0.45 TCGA-AC-A23H-01 4 118976014 118976014 G C NDST3 Missense_Mutation p.E317Q 0.23 tolerated(0.11) possibly_damaging(0.689) TCGA-AC-A23H-01 4 119203088 119203088 G C PRSS12 3'UTR 0.28 TCGA-AC-A23H-01 4 119618419 119618419 G A METTL14 Missense_Mutation p.E196K 0.27 tolerated(0.14) benign(0.08) TCGA-AC-A23H-01 4 120528133 120528133 C A PDE5A Missense_Mutation p.D158Y 0.28 deleterious(0) possibly_damaging(0.906) TCGA-AC-A23H-01 4 120986839 120986839 C T MAD2L1 Missense_Mutation p.E70K 0.24 tolerated(0.58) benign(0.001) TCGA-AC-A23H-01 4 121957701 121957701 C T NDNF Silent p.R475R 0.27 TCGA-AC-A23H-01 4 122063919 122063919 G A TNIP3 Nonsense_Mutation p.Q327* 0.15 TCGA-AC-A23H-01 4 1222122 1222122 C T CTBP1 Missense_Mutation p.E69K 0.26 deleterious(0.01) probably_damaging(0.925) TCGA-AC-A23H-01 4 122722634 122722634 G A EXOSC9 Missense_Mutation p.E19K 0.21 tolerated(0.67) benign(0.008) TCGA-AC-A23H-01 4 122780242 122780242 C G BBS7 Missense_Mutation p.D145H 0.19 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 4 123097031 123097031 G A KIAA1109 Missense_Mutation p.R107Q 0.14 probably_damaging(0.929) TCGA-AC-A23H-01 4 123175386 123175386 C G KIAA1109 Missense_Mutation p.L1987V 0.22 benign(0.001) TCGA-AC-A23H-01 4 123185514 123185514 C A KIAA1109 Missense_Mutation p.Q2417K 0.23 benign(0.155) TCGA-AC-A23H-01 4 124235258 124235258 G A SPATA5 3'UTR 0.23 TCGA-AC-A23H-01 4 124235260 124235260 G A SPATA5 3'UTR 0.17 TCGA-AC-A23H-01 4 124323256 124323256 G C SPRY1 Missense_Mutation p.L170F 0.23 tolerated(0.13) benign(0.168) TCGA-AC-A23H-01 4 126240032 126240032 C G FAT4 Silent p.L822L 0.30 TCGA-AC-A23H-01 4 126369917 126369917 C G FAT4 Silent p.V2582V 0.23 TCGA-AC-A23H-01 4 126411444 126411444 T C FAT4 Silent p.C4489C 0.26 TCGA-AC-A23H-01 4 128807454 128807454 G C PLK4 Missense_Mutation p.R310T 0.28 tolerated(0.61) possibly_damaging(0.597) TCGA-AC-A23H-01 4 128819712 128819712 G C PLK4 3'UTR 0.11 TCGA-AC-A23H-01 4 129019458 129019458 C G LARP1B Silent p.L262L 0.14 TCGA-AC-A23H-01 4 129028330 129028330 G A LARP1B Missense_Mutation p.E284K 0.18 tolerated(0.14) benign(0.15) TCGA-AC-A23H-01 4 129028351 129028351 G A LARP1B Missense_Mutation p.E291K 0.16 deleterious(0.01) benign(0.434) TCGA-AC-A23H-01 4 129891610 129891610 C G SCLT1 Missense_Mutation p.E234Q 0.15 tolerated(0.1) benign(0.176) TCGA-AC-A23H-01 4 13578477 13578477 C G BOD1L1 Missense_Mutation p.R3008T 0.23 probably_damaging(0.999) TCGA-AC-A23H-01 4 138442192 138442192 G C PCDH18 Silent p.R1133R 0.14 TCGA-AC-A23H-01 4 138452321 138452321 G C PCDH18 Missense_Mutation p.L308V 0.17 tolerated(0.59) probably_damaging(0.923) TCGA-AC-A23H-01 4 139966307 139966307 C G CCRN4L Missense_Mutation p.F325L 0.24 deleterious(0.03) possibly_damaging(0.889) TCGA-AC-A23H-01 4 139980485 139980485 C G ELF2 Silent p.L466L 0.20 TCGA-AC-A23H-01 4 140477276 140477276 C T SETD7 Missense_Mutation p.E6K 0.29 tolerated(0.11) benign(0.001) TCGA-AC-A23H-01 4 140640941 140640941 C T MAML3 Missense_Mutation p.G985S 0.24 benign(0.081) TCGA-AC-A23H-01 4 141302167 141302167 C T SCOC Missense_Mutation p.S130L 0.20 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 4 142653952 142653952 T A IL15 Missense_Mutation p.F147Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 4 144465014 144465014 G A SMARCA5 Silent p.E687E 0.21 TCGA-AC-A23H-01 4 146048720 146048720 G T ABCE1 Missense_Mutation p.D599Y 0.20 deleterious(0) probably_damaging(0.926) TCGA-AC-A23H-01 4 146823477 146823477 C A ZNF827 Nonsense_Mutation p.E312* 0.27 TCGA-AC-A23H-01 4 147431098 147431098 G C SLC10A7 Nonsense_Mutation p.S96* 0.26 TCGA-AC-A23H-01 4 147442986 147442986 G C SLC10A7 5'UTR 0.25 TCGA-AC-A23H-01 4 147724638 147724638 C T TTC29 Missense_Mutation p.R434K 0.21 deleterious(0.02) probably_damaging(0.968) TCGA-AC-A23H-01 4 148581999 148581999 G A PRMT10 Nonsense_Mutation p.Q382* 0.24 TCGA-AC-A23H-01 4 151000411 151000411 C T DCLK2 Missense_Mutation p.R78W 0.22 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 4 151169478 151169478 C T DCLK2 Nonsense_Mutation p.Q650* 0.22 TCGA-AC-A23H-01 4 151749368 151749368 G T LRBA Missense_Mutation p.S1712Y 0.23 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-AC-A23H-01 4 151773039 151773039 C G LRBA Missense_Mutation p.E1275Q 0.28 tolerated_low_confidence(0.14) probably_damaging(0.993) TCGA-AC-A23H-01 4 152571248 152571248 C G FAM160A1 Silent p.L685L 0.22 TCGA-AC-A23H-01 4 153896568 153896568 G A FHDC1 Missense_Mutation p.V709M 0.29 tolerated(0.16) benign(0.021) TCGA-AC-A23H-01 4 153896824 153896824 G C FHDC1 Missense_Mutation p.R794T 0.25 tolerated(0.55) benign(0.001) TCGA-AC-A23H-01 4 154542961 154542961 C G KIAA0922 Silent p.A1273A 0.19 TCGA-AC-A23H-01 4 154702487 154702487 C T SFRP2 3'UTR 0.31 TCGA-AC-A23H-01 4 155241942 155241942 C G DCHS2 Missense_Mutation p.D1082H 0.29 deleterious(0.03) benign(0.052) TCGA-AC-A23H-01 4 15559041 15559041 C T CC2D2A Missense_Mutation p.L914F 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-AC-A23H-01 4 155782 155782 C T ZNF718 RNA 0.51 TCGA-AC-A23H-01 4 156787406 156787406 C T ASIC5 5'UTR 0.25 TCGA-AC-A23H-01 4 15688548 15688548 G A FAM200B 5'UTR 0.31 TCGA-AC-A23H-01 4 15690533 15690533 G A FAM200B Missense_Mutation p.D645N 0.18 tolerated(0.17) probably_damaging(0.995) TCGA-AC-A23H-01 4 15733439 15733439 C T BST1 Silent p.L310L 0.32 TCGA-AC-A23H-01 4 158224870 158224870 C G GRIA2 Silent p.L132L 0.26 TCGA-AC-A23H-01 4 159603495 159603495 G A ETFDH Silent p.Q108Q 0.20 TCGA-AC-A23H-01 4 159631981 159631981 G C PPID Nonsense_Mutation p.S305* 0.52 TCGA-AC-A23H-01 4 159756598 159756598 G - FNIP2 Frame_Shift_Del p.E233Kfs*13 0.20 TCGA-AC-A23H-01 4 160252648 160252648 G A RAPGEF2 Missense_Mutation p.M350I 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-AC-A23H-01 4 16177804 16177804 C G TAPT1 Missense_Mutation p.E349Q 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 4 16188198 16188198 C T TAPT1 Silent p.K292K 0.18 TCGA-AC-A23H-01 4 164247622 164247622 C T NPY1R Missense_Mutation p.E29K 0.22 tolerated(0.35) benign(0.004) TCGA-AC-A23H-01 4 164394671 164394671 G A TKTL2 Silent p.F72F 0.19 TCGA-AC-A23H-01 4 167020662 167020662 C G TLL1 Missense_Mutation p.R964G 0.30 deleterious(0.03) probably_damaging(0.991) TCGA-AC-A23H-01 4 167022133 167022133 G C TLL1 3'UTR 0.21 TCGA-AC-A23H-01 4 169279176 169279176 G A DDX60L 3'UTR 0.28 TCGA-AC-A23H-01 4 169433221 169433221 G C PALLD Missense_Mutation p.R189T 0.13 deleterious(0.01) benign(0.112) TCGA-AC-A23H-01 4 169847519 169847519 G C PALLD 3'Flank 0.33 TCGA-AC-A23H-01 4 170663216 170663216 C G C4orf27 Missense_Mutation p.K180N 0.22 deleterious(0.03) benign(0.248) TCGA-AC-A23H-01 4 172735577 172735577 C G GALNTL6 5'UTR 0.38 TCGA-AC-A23H-01 4 174449933 174449933 C T HAND2 Missense_Mutation p.E170K 0.24 deleterious(0) benign(0.063) TCGA-AC-A23H-01 4 17493920 17493920 G C QDPR Silent p.L160L 0.67 TCGA-AC-A23H-01 4 175896721 175896721 C A ADAM29 Silent p.S15S 0.27 TCGA-AC-A23H-01 4 177113979 177113979 C A SPATA4 Missense_Mutation p.D163Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 4 178352830 178352830 C G AGA 3'UTR 0.19 TCGA-AC-A23H-01 4 183651370 183651370 G C TENM3 Missense_Mutation p.R868T 0.30 deleterious(0.01) possibly_damaging(0.587) TCGA-AC-A23H-01 4 183658121 183658121 G A TENM3 Missense_Mutation p.R1043K 0.24 tolerated(0.3) benign(0.364) TCGA-AC-A23H-01 4 184182396 184182396 G A WWC2 Silent p.P540P 0.28 TCGA-AC-A23H-01 4 184577115 184577115 C G RWDD4 Splice_Site p.X9_splice 0.20 TCGA-AC-A23H-01 4 184605206 184605206 C T TRAPPC11 Missense_Mutation p.S429F 0.22 deleterious(0) probably_damaging(0.951) TCGA-AC-A23H-01 4 185593377 185593377 G A PRIMPOL Missense_Mutation p.E203K 0.17 benign(0.046) TCGA-AC-A23H-01 4 186065972 186065972 G C SLC25A4 Missense_Mutation p.D56H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 4 186096982 186096982 G A KIAA1430 Silent p.L426L 0.26 TCGA-AC-A23H-01 4 186291807 186291807 T A LRP2BP Missense_Mutation p.H322L 0.23 tolerated(0.2) benign(0.004) TCGA-AC-A23H-01 4 186559277 186559277 C T SORBS2 Intron 0.14 TCGA-AC-A23H-01 4 186559289 186559289 C G SORBS2 Intron 0.14 TCGA-AC-A23H-01 4 187003492 187003492 C T TLR3 Missense_Mutation p.H218Y 0.25 deleterious(0.02) possibly_damaging(0.697) TCGA-AC-A23H-01 4 187004563 187004563 G C TLR3 Missense_Mutation p.D575H 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 4 187086585 187086585 G C FAM149A Missense_Mutation p.Q377H 0.29 deleterious(0.05) benign(0.104) TCGA-AC-A23H-01 4 187159467 187159467 G T KLKB1 Silent p.L182L 0.18 TCGA-AC-A23H-01 4 187541561 187541561 G A FAT1 Missense_Mutation p.S2060F 0.27 benign(0.014) TCGA-AC-A23H-01 4 187629725 187629725 G C FAT1 Silent p.L419L 0.19 TCGA-AC-A23H-01 4 190862054 190862054 G A FRG1 5'UTR 0.16 TCGA-AC-A23H-01 4 190862211 190862211 G A FRG1 Missense_Mutation p.G16E 0.18 deleterious(0) probably_damaging(0.931) TCGA-AC-A23H-01 4 190862212 190862212 A C FRG1 Silent p.G16G 0.20 TCGA-AC-A23H-01 4 1946642 1946642 G C WHSC1 Intron 0.17 TCGA-AC-A23H-01 4 1950315 1950315 C G WHSC1 Intron 0.25 TCGA-AC-A23H-01 4 1986609 1986609 G C NELFA Missense_Mutation p.S332C 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-AC-A23H-01 4 20620617 20620617 G A SLIT2 Silent p.T1525T 0.19 TCGA-AC-A23H-01 4 20620704 20620704 C T SLIT2 3'UTR 0.22 TCGA-AC-A23H-01 4 22414830 22414830 G C GPR125 Missense_Mutation p.S736C 0.17 tolerated(0.06) probably_damaging(0.946) TCGA-AC-A23H-01 4 22820644 22820644 C A GBA3 3'UTR 0.25 TCGA-AC-A23H-01 4 23797539 23797539 G C PPARGC1A Nonsense_Mutation p.S768* 0.25 TCGA-AC-A23H-01 4 24578092 24578092 G C DHX15 Nonsense_Mutation p.S94* 0.23 TCGA-AC-A23H-01 4 25334905 25334905 C G ZCCHC4 Missense_Mutation p.Q144E 0.28 tolerated(0.37) benign(0.217) TCGA-AC-A23H-01 4 25674706 25674706 C T SLC34A2 Intron 0.22 TCGA-AC-A23H-01 4 25780709 25780709 C G SEL1L3 Missense_Mutation p.E858D 0.34 deleterious(0.03) possibly_damaging(0.651) TCGA-AC-A23H-01 4 25806331 25806331 C T SEL1L3 Silent p.K536K 0.23 TCGA-AC-A23H-01 4 26364093 26364093 C G RBPJ Intron 0.28 TCGA-AC-A23H-01 4 2744011 2744011 G A TNIP2 Silent p.L421L 0.27 TCGA-AC-A23H-01 4 3133049 3133049 G A HTT Missense_Mutation p.D675N 0.23 probably_damaging(0.98) TCGA-AC-A23H-01 4 3235057 3235057 C T HTT Silent p.L2811L 0.50 TCGA-AC-A23H-01 4 3441334 3441334 G C RGS12 Missense_Mutation p.D1423H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-AC-A23H-01 4 37445648 37445648 G A KIAA1239 Missense_Mutation p.V680M 0.27 deleterious(0.01) benign(0.12) TCGA-AC-A23H-01 4 37446766 37446766 C G KIAA1239 Silent p.T1052T 0.20 TCGA-AC-A23H-01 4 37448243 37448243 G C KIAA1239 Missense_Mutation p.D1545H 0.19 tolerated(0.16) benign(0.164) TCGA-AC-A23H-01 4 38776671 38776671 C T TLR10 Missense_Mutation p.E181K 0.16 tolerated(0.1) probably_damaging(0.972) TCGA-AC-A23H-01 4 39254873 39254873 G C WDR19 Missense_Mutation p.R946T 0.24 tolerated(0.05) probably_damaging(0.94) TCGA-AC-A23H-01 4 39436042 39436042 G A KLB Silent p.K346K 0.26 TCGA-AC-A23H-01 4 39462576 39462576 G A LIAS Missense_Mutation p.G71E 0.22 tolerated(0.06) benign(0.275) TCGA-AC-A23H-01 4 39553539 39553539 C G SMIM14 3'UTR 0.30 TCGA-AC-A23H-01 4 40440152 40440152 G A RBM47 Silent p.L253L 0.31 TCGA-AC-A23H-01 4 40811003 40811003 C G NSUN7 3'UTR 0.25 TCGA-AC-A23H-01 4 41262732 41262732 C T UCHL1 Silent p.F81F 0.43 TCGA-AC-A23H-01 4 41266170 41266170 C T UCHL1 Silent p.L193L 0.17 TCGA-AC-A23H-01 4 41983923 41983923 C T DCAF4L1 Silent p.N38N 0.16 TCGA-AC-A23H-01 4 420199 420199 G C ABCA11P RNA 0.49 TCGA-AC-A23H-01 4 420611 420611 G C ABCA11P RNA 0.20 TCGA-AC-A23H-01 4 420614 420614 T G ABCA11P RNA 0.20 TCGA-AC-A23H-01 4 420851 420851 C G ABCA11P Intron 0.22 TCGA-AC-A23H-01 4 42119528 42119528 C G BEND4 3'UTR 0.21 TCGA-AC-A23H-01 4 42590347 42590347 C G ATP8A1 Splice_Site p.X175_splice 0.21 TCGA-AC-A23H-01 4 4276354 4276354 C G LYAR Missense_Mutation p.R191T 0.22 deleterious(0.01) possibly_damaging(0.698) TCGA-AC-A23H-01 4 4317653 4317653 G T ZBTB49 Missense_Mutation p.R526I 0.30 deleterious(0.02) probably_damaging(0.985) TCGA-AC-A23H-01 4 44693782 44693782 G A GUF1 Missense_Mutation p.D527N 0.24 tolerated(0.06) probably_damaging(1) TCGA-AC-A23H-01 4 46067473 46067473 G C GABRG1 Missense_Mutation p.F150L 0.20 deleterious(0) benign(0.109) TCGA-AC-A23H-01 4 46973157 46973157 G C GABRA4 Missense_Mutation p.L273V 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A23H-01 4 47527619 47527619 G A ATP10D Missense_Mutation p.E246K 0.15 deleterious(0.01) probably_damaging(0.951) TCGA-AC-A23H-01 4 48152923 48152923 G A TEC Nonsense_Mutation p.Q277* 0.16 TCGA-AC-A23H-01 4 48490953 48490953 C G SLC10A4 Silent p.L437L 0.33 TCGA-AC-A23H-01 4 48517136 48517136 C T FRYL Missense_Mutation p.E2616K 0.21 tolerated_low_confidence(0.19) benign(0.015) TCGA-AC-A23H-01 4 48523130 48523130 G C FRYL Missense_Mutation p.Q2542E 0.19 tolerated_low_confidence(0.37) benign(0.005) TCGA-AC-A23H-01 4 48607770 48607770 G C FRYL Missense_Mutation p.I274M 0.26 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 4 49030643 49030643 C T CWH43 Intron 0.12 TCGA-AC-A23H-01 4 502673 502673 C T PIGG Missense_Mutation p.S272F 0.28 deleterious(0) probably_damaging(0.988) TCGA-AC-A23H-01 4 52752778 52752778 G A DCUN1D4 Missense_Mutation p.E130K 0.20 tolerated(0.17) benign(0.109) TCGA-AC-A23H-01 4 52777334 52777334 C G DCUN1D4 Missense_Mutation p.F238L 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-AC-A23H-01 4 52862027 52862027 G T LRRC66 Missense_Mutation p.F387L 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 4 54231338 54231338 C G SCFD2 Missense_Mutation p.K257N 0.22 deleterious(0) probably_damaging(0.962) TCGA-AC-A23H-01 4 55156552 55156552 G A PDGFRA Missense_Mutation p.D985N 0.20 tolerated(0.27) possibly_damaging(0.579) TCGA-AC-A23H-01 4 55958879 55958879 G C KDR Missense_Mutation p.P992A 0.23 tolerated(0.75) benign(0.001) TCGA-AC-A23H-01 4 56225577 56225577 C T SRD5A3 Nonsense_Mutation p.Q96* 0.18 TCGA-AC-A23H-01 4 56291609 56291609 C G TMEM165 Missense_Mutation p.S322C 0.23 deleterious(0.01) possibly_damaging(0.524) TCGA-AC-A23H-01 4 56762985 56762985 G C EXOC1 Missense_Mutation p.E686Q 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-AC-A23H-01 4 56840943 56840943 G A CEP135 Missense_Mutation p.M427I 0.13 tolerated(0.06) possibly_damaging(0.491) TCGA-AC-A23H-01 4 57221357 57221357 G C AASDH Missense_Mutation p.S365C 0.20 tolerated(0.08) benign(0.179) TCGA-AC-A23H-01 4 57307916 57307916 C T PAICS Missense_Mutation p.S35F 0.40 probably_damaging(0.977) TCGA-AC-A23H-01 4 57889525 57889525 G A POLR2B Missense_Mutation p.D849N 0.29 deleterious(0) possibly_damaging(0.9) TCGA-AC-A23H-01 4 5862760 5862760 C T CRMP1 Silent p.T216T 0.26 TCGA-AC-A23H-01 4 6087285 6087285 C T JAKMIP1 Silent p.Q232Q 0.22 TCGA-AC-A23H-01 4 6304171 6304171 C T WFS1 Silent p.F883F 0.15 TCGA-AC-A23H-01 4 6711285 6711285 G A MRFAP1L1 Silent p.F24F 0.49 TCGA-AC-A23H-01 4 68383916 68383916 G A CENPC Missense_Mutation p.S263L 0.18 deleterious(0) probably_damaging(0.95) TCGA-AC-A23H-01 4 68385221 68385221 C G CENPC Splice_Site p.X111_splice 0.25 TCGA-AC-A23H-01 4 6858918 6858918 G A KIAA0232 Missense_Mutation p.E133K 0.26 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 4 6860154 6860154 G C KIAA0232 Missense_Mutation p.E147Q 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-AC-A23H-01 4 6863238 6863238 G C KIAA0232 Missense_Mutation p.D377H 0.22 deleterious(0) possibly_damaging(0.845) TCGA-AC-A23H-01 4 68693103 68693103 C A TMPRSS11D Silent p.V276V 0.14 TCGA-AC-A23H-01 4 69101788 69101788 C T TMPRSS11B Splice_Site p.X81_splice 0.47 TCGA-AC-A23H-01 4 69683767 69683767 G C UGT2B10 Missense_Mutation p.E247Q 0.19 deleterious(0.03) possibly_damaging(0.483) TCGA-AC-A23H-01 4 69696606 69696606 G C UGT2B10 3'UTR 0.23 TCGA-AC-A23H-01 4 69962845 69962845 G A UGT2B7 Missense_Mutation p.D203N 0.21 deleterious(0.02) probably_damaging(0.929) TCGA-AC-A23H-01 4 69968644 69968644 G T UGT2B7 Missense_Mutation p.Q330H 0.44 deleterious(0) possibly_damaging(0.864) TCGA-AC-A23H-01 4 70865397 70865397 C G STATH Missense_Mutation p.S22C 0.26 deleterious_low_confidence(0.04) probably_damaging(0.989) TCGA-AC-A23H-01 4 71255434 71255434 C T SMR3B Missense_Mutation p.P37S 0.19 deleterious_low_confidence(0) unknown(0) TCGA-AC-A23H-01 4 71510192 71510192 G A ENAM Missense_Mutation p.E1017K 0.18 deleterious(0.03) possibly_damaging(0.767) TCGA-AC-A23H-01 4 71555085 71555085 G C UTP3 Missense_Mutation p.E231Q 0.23 tolerated(0.51) benign(0.026) TCGA-AC-A23H-01 4 71888182 71888182 C G DCK Silent p.L102L 0.25 TCGA-AC-A23H-01 4 73414401 73414401 G C ADAMTS3 Missense_Mutation p.Q100E 0.22 deleterious(0) benign(0.012) TCGA-AC-A23H-01 4 73941863 73941863 G C ANKRD17 3'UTR 0.19 TCGA-AC-A23H-01 4 76726388 76726388 G C USO1 Missense_Mutation p.E750Q 0.16 tolerated(0.13) possibly_damaging(0.462) TCGA-AC-A23H-01 4 77082637 77082637 G C SCARB2 3'UTR 0.17 TCGA-AC-A23H-01 4 77230616 77230616 G C FAM47E-STBD1 Missense_Mutation p.K180N 0.22 tolerated(0.46) benign(0.001) TCGA-AC-A23H-01 4 77660065 77660065 G A SHROOM3 Missense_Mutation p.D247N 0.19 deleterious(0) possibly_damaging(0.859) TCGA-AC-A23H-01 4 77660746 77660746 G C SHROOM3 Missense_Mutation p.E474Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 4 78740522 78740522 C T CNOT6L 5'UTR 0.35 TCGA-AC-A23H-01 4 79229317 79229317 G C FRAS1 Missense_Mutation p.E544D 0.45 benign(0.001) TCGA-AC-A23H-01 4 79367922 79367922 C T FRAS1 Silent p.L1966L 0.25 TCGA-AC-A23H-01 4 81123172 81123172 G A PRDM8 Missense_Mutation p.D186N 0.19 tolerated_low_confidence(0.17) probably_damaging(0.956) TCGA-AC-A23H-01 4 81967736 81967736 G C BMP3 Missense_Mutation p.W387C 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 4 82027078 82027078 G A PRKG2 Missense_Mutation p.S651F 0.22 deleterious(0) possibly_damaging(0.839) TCGA-AC-A23H-01 4 82368682 82368682 C G RASGEF1B Missense_Mutation p.Q235H 0.23 tolerated(0.57) benign(0.005) TCGA-AC-A23H-01 4 83406675 83406675 C T TMEM150C Missense_Mutation p.D247N 0.34 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-AC-A23H-01 4 83828937 83828937 G A THAP9 Splice_Site p.X194_splice 0.43 TCGA-AC-A23H-01 4 83839313 83839313 G C THAP9 Missense_Mutation p.E650Q 0.14 tolerated(0.49) benign(0.036) TCGA-AC-A23H-01 4 84376869 84376869 C T HELQ 5'UTR 0.27 TCGA-AC-A23H-01 4 84525967 84525967 G A AGPAT9 3'UTR 0.34 TCGA-AC-A23H-01 4 85638146 85638146 C G WDFY3 Missense_Mutation p.R2593T 0.19 tolerated(0.4) benign(0.003) TCGA-AC-A23H-01 4 85710959 85710959 C A WDFY3 Missense_Mutation p.V1197F 0.25 deleterious(0.01) benign(0.354) TCGA-AC-A23H-01 4 86956 86956 C G Z95704.2 RNA 0.22 TCGA-AC-A23H-01 4 87023066 87023066 G C MAPK10 Missense_Mutation p.S182C 0.31 deleterious(0) possibly_damaging(0.825) TCGA-AC-A23H-01 4 87051 87051 G A Z95704.2 RNA 0.19 TCGA-AC-A23H-01 4 87653744 87653744 G C PTPN13 Splice_Site p.X562_splice 0.47 TCGA-AC-A23H-01 4 87671906 87671906 C G PTPN13 Silent p.L978L 0.22 TCGA-AC-A23H-01 4 87707075 87707075 G C PTPN13 Missense_Mutation p.E2116Q 0.15 deleterious(0.01) benign(0.169) TCGA-AC-A23H-01 4 87724873 87724873 C T PTPN13 Silent p.L2178L 0.21 TCGA-AC-A23H-01 4 89410467 89410467 G C HERC5 Missense_Mutation p.D705H 0.21 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 4 90856008 90856008 G A MMRN1 Missense_Mutation p.E393K 0.21 deleterious(0.03) benign(0.035) TCGA-AC-A23H-01 4 95206186 95206186 G A SMARCAD1 Silent p.L997L 0.10 TCGA-AC-A23H-01 4 96046217 96046217 G A BMPR1B Missense_Mutation p.R207K 0.63 tolerated(1) benign(0.001) TCGA-AC-A23H-01 4 9784334 9784334 C G DRD5 Missense_Mutation p.I227M 0.14 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 4 9785115 9785115 C T DRD5 3'UTR 0.40 TCGA-AC-A23H-01 4 99182684 99182684 C T RAP1GDS1 5'UTR 0.33 TCGA-AC-A23H-01 4 99273631 99273631 T C RAP1GDS1 Silent p.F81F 0.24 TCGA-AC-A23H-01 4 99355171 99355171 G C RAP1GDS1 Missense_Mutation p.E510Q 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 4 9987380 9987380 A T SLC2A9 Missense_Mutation p.S150T 0.23 tolerated(0.25) benign(0.01) TCGA-AC-A23H-01 4 99956581 99956581 C G METAP1 Missense_Mutation p.Q104E 0.23 tolerated(0.48) benign(0.004) TCGA-AC-A23H-01 4 99962254 99962254 G T METAP1 Nonsense_Mutation p.E165* 0.22 TCGA-AC-A23H-01 4 99964478 99964478 G T METAP1 Nonsense_Mutation p.E199* 0.56 TCGA-AC-A23H-01 4 99997596 99997596 G A ADH5 Silent p.I224I 0.31 TCGA-AC-A23H-01 5 101583077 101583077 C G SLCO4C1 Missense_Mutation p.E564Q 0.28 tolerated(0.19) benign(0.129) TCGA-AC-A23H-01 5 102363906 102363906 G A PAM Missense_Mutation p.E904K 0.23 tolerated(0.06) probably_damaging(0.98) TCGA-AC-A23H-01 5 102530701 102530701 G C PPIP5K2 Missense_Mutation p.K1177N 0.26 tolerated_low_confidence(0.39) benign(0.167) TCGA-AC-A23H-01 5 1034419 1034419 G C NKD2 Missense_Mutation p.D134H 0.12 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 5 112176467 112176467 G C APC Missense_Mutation p.E1726Q 0.28 possibly_damaging(0.861) TCGA-AC-A23H-01 5 112179740 112179740 G C APC Missense_Mutation p.D2817H 0.22 probably_damaging(1) TCGA-AC-A23H-01 5 112630240 112630240 C T MCC Intron 0.27 TCGA-AC-A23H-01 5 112720796 112720796 C G MCC Missense_Mutation p.R95T 0.28 deleterious_low_confidence(0.01) benign(0.077) TCGA-AC-A23H-01 5 112770087 112770087 G C TSSK1B Missense_Mutation p.I150M 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-AC-A23H-01 5 113699681 113699681 C G KCNN2 Missense_Mutation p.H189D 0.26 deleterious(0) probably_damaging(0.954) TCGA-AC-A23H-01 5 114515800 114515800 C G TRIM36 5'UTR 0.24 TCGA-AC-A23H-01 5 114557705 114557705 C G PGGT1B Missense_Mutation p.G220A 0.23 tolerated(0.05) probably_damaging(0.974) TCGA-AC-A23H-01 5 115177243 115177243 C G ATG12 Missense_Mutation p.E3Q 0.27 deleterious_low_confidence(0.02) benign(0.156) TCGA-AC-A23H-01 5 115426815 115426815 C G COMMD10 Missense_Mutation p.Q58E 0.26 tolerated(0.14) possibly_damaging(0.597) TCGA-AC-A23H-01 5 118485468 118485468 C T DMXL1 Missense_Mutation p.H1316Y 0.26 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 5 118506932 118506932 C A DMXL1 Missense_Mutation p.S2149Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 5 121297677 121297677 G A SRFBP1 5'UTR 0.25 TCGA-AC-A23H-01 5 121356193 121356193 G C SRFBP1 Missense_Mutation p.E255Q 0.28 tolerated(0.13) benign(0.064) TCGA-AC-A23H-01 5 122724186 122724186 G C CEP120 Nonsense_Mutation p.S457* 0.52 TCGA-AC-A23H-01 5 122881259 122881259 C T CSNK1G3 5'UTR 0.28 TCGA-AC-A23H-01 5 123974839 123974839 G C ZNF608 Missense_Mutation p.P1507A 0.24 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 5 126746149 126746149 G C MEGF10 Missense_Mutation p.G329A 0.19 tolerated(0.06) benign(0.201) TCGA-AC-A23H-01 5 127611847 127611847 C G FBN2 Missense_Mutation p.D2493H 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 127680194 127680194 C T FBN2 Missense_Mutation p.E1076K 0.19 deleterious(0) probably_damaging(0.949) TCGA-AC-A23H-01 5 129001211 129001211 G A ADAMTS19 Silent p.V809V 0.15 TCGA-AC-A23H-01 5 131323825 131323825 G A ACSL6 Silent p.I249I 0.21 TCGA-AC-A23H-01 5 131607112 131607112 C G PDLIM4 Nonsense_Mutation p.S208* 0.46 TCGA-AC-A23H-01 5 131663033 131663033 C G SLC22A4 Missense_Mutation p.I296M 0.26 deleterious(0) probably_damaging(0.909) TCGA-AC-A23H-01 5 131940517 131940517 G A RAD50 Silent p.L848L 0.29 TCGA-AC-A23H-01 5 132197570 132197570 C G GDF9 Missense_Mutation p.R359T 0.27 deleterious(0) probably_damaging(0.961) TCGA-AC-A23H-01 5 132202615 132202615 G A UQCRQ Silent p.V14V 0.25 TCGA-AC-A23H-01 5 132403211 132403211 G T HSPA4 Missense_Mutation p.D90Y 0.25 tolerated(0.07) benign(0.082) TCGA-AC-A23H-01 5 132424819 132424819 C T HSPA4 Silent p.L404L 0.27 TCGA-AC-A23H-01 5 133316492 133316492 G C VDAC1 Missense_Mutation p.A160G 0.20 tolerated(0.11) benign(0) TCGA-AC-A23H-01 5 133316493 133316493 C A VDAC1 Missense_Mutation p.A160S 0.20 tolerated(0.46) benign(0.002) TCGA-AC-A23H-01 5 133451662 133451662 C A TCF7 Missense_Mutation p.L127M 0.32 tolerated(0.27) probably_damaging(0.986) TCGA-AC-A23H-01 5 134018068 134018068 G A SEC24A Missense_Mutation p.E463K 0.31 deleterious(0.02) benign(0.011) TCGA-AC-A23H-01 5 134039561 134039561 G A SEC24A Silent p.E793E 0.14 TCGA-AC-A23H-01 5 134041088 134041088 G C SEC24A Missense_Mutation p.A838P 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 5 134229287 134229287 C T TXNDC15 Silent p.L233L 0.18 TCGA-AC-A23H-01 5 134296426 134296426 G C PCBD2 Intron 0.18 TCGA-AC-A23H-01 5 134344659 134344659 C T CATSPER3 Silent p.I268I 0.12 TCGA-AC-A23H-01 5 135207453 135207453 C T SLC25A48 Intron 0.17 TCGA-AC-A23H-01 5 137488314 137488314 C T BRD8 Missense_Mutation p.E905K 0.19 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-AC-A23H-01 5 137518127 137518127 C G KIF20A Nonsense_Mutation p.S164* 0.20 TCGA-AC-A23H-01 5 137521250 137521250 G C KIF20A Missense_Mutation p.R659T 0.10 tolerated(0.08) benign(0.002) TCGA-AC-A23H-01 5 137721943 137721943 G C KDM3B Missense_Mutation p.R338T 0.29 tolerated(0.14) benign(0.118) TCGA-AC-A23H-01 5 137854525 137854525 G A ETF1 Missense_Mutation p.P40S 0.24 tolerated(0.06) possibly_damaging(0.794) TCGA-AC-A23H-01 5 137893676 137893676 C G HSPA9 Splice_Site p.X506_splice 0.21 TCGA-AC-A23H-01 5 137902325 137902325 G A HSPA9 Missense_Mutation p.S321L 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A23H-01 5 138210021 138210021 C G LRRTM2 Missense_Mutation p.E77Q 0.26 tolerated(0.31) benign(0.004) TCGA-AC-A23H-01 5 138210060 138210060 G C LRRTM2 Missense_Mutation p.L64V 0.28 tolerated(0.18) possibly_damaging(0.54) TCGA-AC-A23H-01 5 138737435 138737435 C T SPATA24 Intron 0.23 TCGA-AC-A23H-01 5 139193008 139193008 C T PSD2 Silent p.D162D 0.14 TCGA-AC-A23H-01 5 139267080 139267080 C T NRG2 Silent p.L239L 0.21 TCGA-AC-A23H-01 5 139722246 139722246 C T HBEGF Silent p.V124V 0.22 TCGA-AC-A23H-01 5 139752331 139752331 C G SLC4A9 Nonsense_Mutation p.S967* 0.23 TCGA-AC-A23H-01 5 140210053 140210053 G A PCDHA6 Missense_Mutation p.E793K 0.23 tolerated_low_confidence(0.7) benign(0.007) TCGA-AC-A23H-01 5 140214100 140214100 C T PCDHA7 Silent p.F44F 0.24 TCGA-AC-A23H-01 5 140221355 140221355 C T PCDHA8 Missense_Mutation p.S150F 0.30 deleterious_low_confidence(0.01) benign(0.077) TCGA-AC-A23H-01 5 140236531 140236531 G C PCDHA10 Missense_Mutation p.E300Q 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.612) TCGA-AC-A23H-01 5 140256147 140256147 C G PCDHA12 Missense_Mutation p.Q364E 0.27 deleterious_low_confidence(0.05) benign(0.106) TCGA-AC-A23H-01 5 140256956 140256956 G C PCDHA12 Silent p.T633T 0.22 TCGA-AC-A23H-01 5 140306568 140306568 G A PCDHAC1 Missense_Mutation p.E31K 0.28 tolerated(0.11) benign(0.162) TCGA-AC-A23H-01 5 140432681 140432681 G A PCDHB1 Silent p.L542L 0.17 TCGA-AC-A23H-01 5 140480040 140480040 C T PCDHB3 5'Flank 0.42 TCGA-AC-A23H-01 5 140481735 140481735 C T PCDHB3 Missense_Mutation p.S501F 0.24 tolerated_low_confidence(0.17) benign(0.01) TCGA-AC-A23H-01 5 140481751 140481751 C G PCDHB3 Missense_Mutation p.I506M 0.27 deleterious_low_confidence(0) possibly_damaging(0.458) TCGA-AC-A23H-01 5 140502768 140502768 G A PCDHB4 Silent p.L396L 0.20 TCGA-AC-A23H-01 5 140516178 140516178 C G PCDHB5 Missense_Mutation p.L388V 0.24 tolerated_low_confidence(0.09) benign(0.068) TCGA-AC-A23H-01 5 140537166 140537166 C T PCDHB17 Silent p.F530F 0.30 TCGA-AC-A23H-01 5 140553534 140553534 G C PCDHB7 Missense_Mutation p.R373T 0.29 tolerated_low_confidence(0.15) benign(0.045) TCGA-AC-A23H-01 5 140553589 140553589 C A PCDHB7 Missense_Mutation p.F391L 0.26 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-AC-A23H-01 5 140557670 140557670 C G PCDHB8 Missense_Mutation p.L19V 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-AC-A23H-01 5 140559780 140559780 C T PCDHB8 Missense_Mutation p.S722L 0.21 tolerated_low_confidence(0.05) benign(0.018) TCGA-AC-A23H-01 5 140562661 140562661 C T PCDHB16 Missense_Mutation p.S176F 0.22 tolerated_low_confidence(0.15) benign(0.078) TCGA-AC-A23H-01 5 140562819 140562819 C T PCDHB16 Missense_Mutation p.R229C 0.51 deleterious_low_confidence(0.04) benign(0.008) TCGA-AC-A23H-01 5 140593758 140593758 G A PCDHB13 Silent p.L21L 0.37 TCGA-AC-A23H-01 5 140711611 140711611 C T PCDHGA1 Nonsense_Mutation p.Q454* 0.27 TCGA-AC-A23H-01 5 140711667 140711667 C G PCDHGA1 Missense_Mutation p.F472L 0.22 tolerated_low_confidence(0.09) benign(0.06) TCGA-AC-A23H-01 5 140712155 140712155 G C PCDHGA1 Missense_Mutation p.R635T 0.36 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-AC-A23H-01 5 140712450 140712450 G A PCDHGA1 Silent p.A733A 0.18 TCGA-AC-A23H-01 5 140730773 140730773 G A PCDHGB1 Missense_Mutation p.E316K 0.18 deleterious(0.02) probably_damaging(1) TCGA-AC-A23H-01 5 140732107 140732107 G C PCDHGB1 Missense_Mutation p.E760D 0.49 tolerated(0.17) benign(0.219) TCGA-AC-A23H-01 5 140735109 140735109 G T PCDHGA4 Silent p.V114V 0.25 TCGA-AC-A23H-01 5 140735326 140735326 G A PCDHGA4 Missense_Mutation p.D187N 0.22 tolerated_low_confidence(0.14) possibly_damaging(0.664) TCGA-AC-A23H-01 5 140741269 140741269 G C PCDHGB2 Missense_Mutation p.E523Q 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 140750963 140750963 G A PCDHGB3 Silent p.Q334Q 0.10 TCGA-AC-A23H-01 5 140762875 140762875 G A PCDHGA7 Missense_Mutation p.E137K 0.44 tolerated_low_confidence(0.05) benign(0.057) TCGA-AC-A23H-01 5 140763855 140763855 G C PCDHGA7 Missense_Mutation p.E463D 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A23H-01 5 140768028 140768028 G T PCDHGB4 Nonsense_Mutation p.E193* 0.35 TCGA-AC-A23H-01 5 140768279 140768279 G A PCDHGB4 Silent p.E276E 0.23 TCGA-AC-A23H-01 5 140769359 140769359 C G PCDHGB4 Silent p.V636V 0.35 TCGA-AC-A23H-01 5 140769441 140769441 G A PCDHGB4 Missense_Mutation p.D664N 0.23 tolerated(0.07) probably_damaging(0.989) TCGA-AC-A23H-01 5 140784179 140784179 G C PCDHGA9 Missense_Mutation p.D554H 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-AC-A23H-01 5 140789976 140789976 G A PCDHGB6 Missense_Mutation p.G736E 0.20 tolerated(0.12) benign(0.009) TCGA-AC-A23H-01 5 140812361 140812361 G A PCDHGA12 Missense_Mutation p.E679K 0.42 tolerated_low_confidence(0.34) benign(0.005) TCGA-AC-A23H-01 5 140869185 140869185 C T PCDHGC5 Silent p.L126L 0.29 TCGA-AC-A23H-01 5 140890725 140890725 G A PCDHGB6 Silent p.K926K 0.22 TCGA-AC-A23H-01 5 141025748 141025748 C T FCHSD1 Missense_Mutation p.R352Q 0.48 tolerated(0.13) probably_damaging(0.946) TCGA-AC-A23H-01 5 141248316 141248316 C T PCDH1 Missense_Mutation p.E241K 0.25 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 5 141303411 141303411 C T KIAA0141 5'UTR 0.38 TCGA-AC-A23H-01 5 141354446 141354446 G C RNF14 Missense_Mutation p.E78Q 0.25 tolerated(0.13) benign(0.173) TCGA-AC-A23H-01 5 1416257 1416257 C A SLC6A3 Silent p.L329L 0.15 TCGA-AC-A23H-01 5 143200248 143200248 C G HMHB1 3'UTR 0.26 TCGA-AC-A23H-01 5 145524057 145524057 G T LARS Missense_Mutation p.Q545K 0.28 tolerated(1) benign(0.001) TCGA-AC-A23H-01 5 145543935 145543935 C G LARS Missense_Mutation p.E178Q 0.35 tolerated(0.46) benign(0.038) TCGA-AC-A23H-01 5 146763733 146763733 C T STK32A 3'UTR 0.33 TCGA-AC-A23H-01 5 146780345 146780345 C T DPYSL3 Silent p.Q454Q 0.26 TCGA-AC-A23H-01 5 146798120 146798120 C T DPYSL3 Missense_Mutation p.G182E 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 1479769 1479769 C T LPCAT1 Silent p.T261T 0.25 TCGA-AC-A23H-01 5 148712258 148712258 G A AFAP1L1 Missense_Mutation p.G659E 0.22 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 5 148876249 148876249 C T CSNK1A1 3'Flank 0.24 TCGA-AC-A23H-01 5 148929690 148929690 C T CSNK1A1 Missense_Mutation p.E60K 0.20 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-AC-A23H-01 5 148930571 148930571 C G CSNK1A1 5'Flank 0.29 TCGA-AC-A23H-01 5 149206235 149206235 G C PPARGC1B Splice_Site p.X85_splice 0.34 TCGA-AC-A23H-01 5 149247712 149247712 C T PDE6A Missense_Mutation p.M715I 0.22 deleterious(0) benign(0.226) TCGA-AC-A23H-01 5 149323885 149323885 C G PDE6A Missense_Mutation p.D118H 0.25 deleterious(0.02) possibly_damaging(0.89) TCGA-AC-A23H-01 5 149449523 149449523 C G CSF1R Missense_Mutation p.E475Q 0.23 tolerated(0.61) benign(0.014) TCGA-AC-A23H-01 5 149633106 149633106 C T CAMK2A Missense_Mutation p.E139K 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A23H-01 5 149771697 149771697 G C TCOF1 Missense_Mutation p.D1159H 0.48 deleterious(0) possibly_damaging(0.894) TCGA-AC-A23H-01 5 149932856 149932856 C T NDST1 Missense_Mutation p.P871S 0.32 deleterious(0) probably_damaging(0.981) TCGA-AC-A23H-01 5 150051169 150051169 G C MYOZ3 Missense_Mutation p.G76A 0.33 tolerated(0.06) benign(0.026) TCGA-AC-A23H-01 5 150276209 150276209 T A ZNF300 Missense_Mutation p.I214F 0.24 tolerated(0.09) benign(0.002) TCGA-AC-A23H-01 5 150843174 150843174 C T SLC36A1 Silent p.L68L 0.30 TCGA-AC-A23H-01 5 150906915 150906915 G C FAT2 Silent p.L3396L 0.29 TCGA-AC-A23H-01 5 150923332 150923332 C G FAT2 Missense_Mutation p.L2452F 0.16 probably_damaging(1) TCGA-AC-A23H-01 5 150924801 150924801 C G FAT2 Missense_Mutation p.D1963H 0.23 benign(0.322) TCGA-AC-A23H-01 5 150946695 150946695 C G FAT2 Missense_Mutation p.E600Q 0.19 benign(0.312) TCGA-AC-A23H-01 5 150946913 150946913 C G FAT2 Missense_Mutation p.R527T 0.24 probably_damaging(1) TCGA-AC-A23H-01 5 151045926 151045926 C T SPARC Missense_Mutation p.D244N 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 5 151771983 151771983 C T NMUR2 Silent p.Q339Q 0.18 TCGA-AC-A23H-01 5 153085554 153085554 G T GRIA1 Nonsense_Mutation p.E594* 0.17 TCGA-AC-A23H-01 5 153190618 153190618 G A GRIA1 Missense_Mutation p.E862K 0.21 tolerated(0.19) benign(0.26) TCGA-AC-A23H-01 5 153765877 153765877 C T GALNT10 Missense_Mutation p.P315S 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 153855390 153855390 G C HAND1 Silent p.V208V 0.26 TCGA-AC-A23H-01 5 154172346 154172346 G C LARP1 Missense_Mutation p.Q166H 0.38 tolerated(0.06) benign(0.004) TCGA-AC-A23H-01 5 155935695 155935695 G C SGCD Missense_Mutation p.E93Q 0.18 tolerated(0.06) probably_damaging(0.981) TCGA-AC-A23H-01 5 156635957 156635957 G T ITK Missense_Mutation p.V66L 0.15 deleterious(0.03) possibly_damaging(0.901) TCGA-AC-A23H-01 5 157078252 157078252 G A SOX30 Missense_Mutation p.P279S 0.32 tolerated(0.25) benign(0.177) TCGA-AC-A23H-01 5 158601064 158601064 G A RNF145 Nonsense_Mutation p.Q272* 0.49 TCGA-AC-A23H-01 5 158743780 158743780 G A IL12B Silent p.C300C 0.23 TCGA-AC-A23H-01 5 159820684 159820684 G A C5orf54 3'UTR 0.19 TCGA-AC-A23H-01 5 160758051 160758051 C A GABRB2 Missense_Mutation p.D306Y 0.57 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 161117209 161117209 G A GABRA6 Missense_Mutation p.E226K 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-AC-A23H-01 5 161119195 161119195 G A GABRA6 Missense_Mutation p.E359K 0.21 tolerated(0.67) benign(0.009) TCGA-AC-A23H-01 5 162910044 162910044 G C HMMR Missense_Mutation p.Q517H 0.18 deleterious(0) possibly_damaging(0.898) TCGA-AC-A23H-01 5 16481131 16481131 G C FAM134B Silent p.L219L 0.14 TCGA-AC-A23H-01 5 167871546 167871546 G C WWC1 Missense_Mutation p.K827N 0.22 tolerated(0.3) possibly_damaging(0.462) TCGA-AC-A23H-01 5 168093418 168093418 C G SLIT3 3'UTR 0.30 TCGA-AC-A23H-01 5 169143298 169143298 G T DOCK2 Missense_Mutation p.D675Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 5 169508884 169508884 G A DOCK2 Missense_Mutation p.E1776K 0.30 deleterious_low_confidence(0.03) benign(0.115) TCGA-AC-A23H-01 5 170883686 170883686 G A FGF18 Silent p.E167E 0.31 TCGA-AC-A23H-01 5 171774304 171774304 G A SH3PXD2B Missense_Mutation p.R349C 0.16 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 5 173086 173086 G C PLEKHG4B Silent p.L1019L 0.20 TCGA-AC-A23H-01 5 173380155 173380155 C T CPEB4 Silent p.T614T 0.21 TCGA-AC-A23H-01 5 175717603 175717603 C T SIMC1 Intron 0.12 TCGA-AC-A23H-01 5 175811137 175811137 C G NOP16 Missense_Mutation p.E181Q 0.25 deleterious_low_confidence(0) benign(0.403) TCGA-AC-A23H-01 5 175816403 175816403 C T HIGD2A Nonsense_Mutation p.Q76* 0.19 TCGA-AC-A23H-01 5 176562130 176562130 G A NSD1 Missense_Mutation p.R9K 0.66 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-AC-A23H-01 5 176678835 176678835 C G NSD1 Missense_Mutation p.I1582M 0.25 deleterious(0.02) benign(0.019) TCGA-AC-A23H-01 5 176733425 176733425 G A PRELID1 Missense_Mutation p.E172K 0.21 tolerated(0.25) benign(0.049) TCGA-AC-A23H-01 5 176882158 176882158 C T PRR7 Silent p.F30F 0.33 TCGA-AC-A23H-01 5 176910978 176910978 C G PDLIM7 Missense_Mutation p.E393Q 0.29 tolerated(0.24) probably_damaging(0.994) TCGA-AC-A23H-01 5 178044393 178044393 C A CLK4 Nonsense_Mutation p.E143* 0.22 TCGA-AC-A23H-01 5 178392175 178392175 C A ZNF454 Missense_Mutation p.S257Y 0.25 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 5 178392438 178392438 C T ZNF454 Nonsense_Mutation p.Q345* 0.41 TCGA-AC-A23H-01 5 179043940 179043940 G A HNRNPH1 Silent p.L379L 0.24 TCGA-AC-A23H-01 5 179069389 179069389 G C C5orf60 Missense_Mutation p.S262C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-AC-A23H-01 5 179221196 179221196 C G LTC4S Intron 0.35 TCGA-AC-A23H-01 5 179226238 179226238 G A MGAT4B Missense_Mutation p.H387Y 0.23 tolerated(0.14) benign(0.14) TCGA-AC-A23H-01 5 179264713 179264713 C G C5orf45 Missense_Mutation p.R237T 0.21 tolerated(0.23) benign(0.287) TCGA-AC-A23H-01 5 179529117 179529117 C T RASGEF1C Missense_Mutation p.E444K 0.28 deleterious(0) probably_damaging(0.94) TCGA-AC-A23H-01 5 179757747 179757747 C T GFPT2 Missense_Mutation p.E163K 0.28 tolerated(0.59) benign(0.004) TCGA-AC-A23H-01 5 179996148 179996148 C G CNOT6 Missense_Mutation p.L356V 0.22 tolerated(0.48) benign(0.02) TCGA-AC-A23H-01 5 179996254 179996254 C T CNOT6 Missense_Mutation p.S391F 0.24 deleterious(0.01) benign(0.032) TCGA-AC-A23H-01 5 180277231 180277231 C T ZFP62 Missense_Mutation p.E422K 0.30 tolerated(0.87) probably_damaging(0.997) TCGA-AC-A23H-01 5 180277605 180277605 C G ZFP62 Missense_Mutation p.R297T 0.22 tolerated(0.93) probably_damaging(0.999) TCGA-AC-A23H-01 5 180338377 180338377 G C BTNL8 Missense_Mutation p.V146L 0.15 tolerated(0.31) benign(0.197) TCGA-AC-A23H-01 5 180374509 180374509 C T BTNL8 Intron 0.19 TCGA-AC-A23H-01 5 180626890 180626890 G A TRIM7 Silent p.I270I 0.21 TCGA-AC-A23H-01 5 180661694 180661694 C T TRIM41 Silent p.F604F 0.27 TCGA-AC-A23H-01 5 180668564 180668564 C A GNB2L1 Missense_Mutation p.Q119H 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-AC-A23H-01 5 21817060 21817060 C G CDH12 Missense_Mutation p.L332F 0.19 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 5 23527069 23527069 C T PRDM9 Silent p.L624L 0.21 TCGA-AC-A23H-01 5 23527741 23527741 C T PRDM9 Silent p.L848L 0.48 TCGA-AC-A23H-01 5 23527874 23527874 G C PRDM9 Missense_Mutation p.D893H 0.29 tolerated_low_confidence(0.22) benign(0.007) TCGA-AC-A23H-01 5 26885945 26885945 C - CDH9 Frame_Shift_Del p.D554Mfs*8 0.20 TCGA-AC-A23H-01 5 26902826 26902826 C G CDH9 Missense_Mutation p.E338Q 0.17 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 5 31532464 31532464 C T C5orf22 5'UTR 0.35 TCGA-AC-A23H-01 5 32091091 32091091 G A PDZD2 Missense_Mutation p.E2513K 0.26 deleterious(0) benign(0.437) TCGA-AC-A23H-01 5 32364308 32364308 C G ZFR Missense_Mutation p.R970T 0.23 deleterious(0) unknown(0) TCGA-AC-A23H-01 5 33467012 33467012 G A TARS Missense_Mutation p.D682N 0.18 deleterious(0.01) benign(0.443) TCGA-AC-A23H-01 5 33658341 33658341 C T ADAMTS12 Missense_Mutation p.E380K 0.26 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 33662113 33662113 C G ADAMTS12 Missense_Mutation p.K316N 0.24 tolerated(0.83) probably_damaging(0.992) TCGA-AC-A23H-01 5 34043072 34043072 C T C1QTNF3 Silent p.R53R 0.40 TCGA-AC-A23H-01 5 34043144 34043144 C T C1QTNF3 Silent p.V29V 0.32 TCGA-AC-A23H-01 5 34864560 34864560 C G TTC23L Missense_Mutation p.F185L 0.15 tolerated(0.7) benign(0.002) TCGA-AC-A23H-01 5 34945066 34945066 C G DNAJC21 Missense_Mutation p.Q360E 0.25 tolerated(1) benign(0.012) TCGA-AC-A23H-01 5 35048077 35048077 G C AGXT2 5'UTR 0.38 TCGA-AC-A23H-01 5 36117855 36117855 A G LMBRD2 Silent p.Y428Y 0.19 TCGA-AC-A23H-01 5 36972067 36972067 G A NIPBL Missense_Mutation p.M264I 0.21 tolerated_low_confidence(0.62) benign(0) TCGA-AC-A23H-01 5 36976114 36976114 G A NIPBL Missense_Mutation p.D369N 0.24 deleterious_low_confidence(0.01) benign(0.425) TCGA-AC-A23H-01 5 37020979 37020979 G A NIPBL Silent p.Q1776Q 0.29 TCGA-AC-A23H-01 5 37108570 37108570 G C C5orf42 Missense_Mutation p.S3081C 0.24 tolerated(0.11) benign(0.052) TCGA-AC-A23H-01 5 37226482 37226482 G C C5orf42 Missense_Mutation p.Q739E 0.14 tolerated(0.06) benign(0.009) TCGA-AC-A23H-01 5 37303458 37303458 C G NUP155 Missense_Mutation p.R1074T 0.24 tolerated(0.24) benign(0.004) TCGA-AC-A23H-01 5 37341311 37341311 C G NUP155 Missense_Mutation p.R376T 0.32 tolerated(0.32) benign(0.007) TCGA-AC-A23H-01 5 37370990 37370990 G A NUP155 Silent p.I30I 0.13 TCGA-AC-A23H-01 5 38947460 38947460 G A RICTOR Missense_Mutation p.S1407F 0.28 deleterious(0.01) possibly_damaging(0.684) TCGA-AC-A23H-01 5 41067250 41067250 C T MROH2B Missense_Mutation p.R54Q 0.11 tolerated(0.37) benign(0.003) TCGA-AC-A23H-01 5 41195978 41195978 G T C6 Nonsense_Mutation p.S168* 0.23 TCGA-AC-A23H-01 5 42711468 42711468 G A GHR Missense_Mutation p.E260K 0.47 tolerated(0.4) possibly_damaging(0.785) TCGA-AC-A23H-01 5 43294891 43294891 G C HMGCS1 Silent p.L326L 0.17 TCGA-AC-A23H-01 5 43644811 43644811 C G NNT Missense_Mutation p.I399M 0.18 tolerated(1) benign(0.406) TCGA-AC-A23H-01 5 45353208 45353208 C G HCN1 Silent p.L457L 0.24 TCGA-AC-A23H-01 5 475774 475774 G A SLC9A3 Missense_Mutation p.S718L 0.41 tolerated(0.06) benign(0.004) TCGA-AC-A23H-01 5 54403985 54403985 G A GZMA Silent p.V130V 0.12 TCGA-AC-A23H-01 5 5461007 5461007 G C KIAA0947 Missense_Mutation p.E520D 0.29 tolerated(0.4) benign(0.013) TCGA-AC-A23H-01 5 5463630 5463630 C T KIAA0947 Nonsense_Mutation p.Q1395* 0.19 TCGA-AC-A23H-01 5 5466495 5466495 C T KIAA0947 Nonsense_Mutation p.Q1981* 0.22 TCGA-AC-A23H-01 5 5473835 5473835 G A KIAA0947 Nonsense_Mutation p.W2129* 0.23 TCGA-AC-A23H-01 5 55209369 55209369 G A IL31RA Silent p.L569L 0.19 TCGA-AC-A23H-01 5 56160574 56160574 G C MAP3K1 Missense_Mutation p.R283T 0.24 deleterious(0) possibly_damaging(0.803) TCGA-AC-A23H-01 5 56542228 56542228 C G GPBP1 Missense_Mutation p.L201V 0.31 tolerated(0.51) benign(0.005) TCGA-AC-A23H-01 5 57751523 57751523 C G PLK2 Missense_Mutation p.D490H 0.14 deleterious(0.03) possibly_damaging(0.621) TCGA-AC-A23H-01 5 60456016 60456016 G A SMIM15 5'UTR 0.28 TCGA-AC-A23H-01 5 61684768 61684768 C T DIMT1 3'UTR 0.33 TCGA-AC-A23H-01 5 61875318 61875318 C T LRRC70 Missense_Mutation p.T18I 0.29 tolerated(0.09) benign(0.055) TCGA-AC-A23H-01 5 61876529 61876529 C T LRRC70 Missense_Mutation p.H422Y 0.16 tolerated(0.94) benign(0.123) TCGA-AC-A23H-01 5 64314107 64314107 G A CWC27 Missense_Mutation p.E460K 0.23 tolerated(0.16) possibly_damaging(0.521) TCGA-AC-A23H-01 5 64892258 64892258 G C TRIM23 Silent p.L470L 0.53 TCGA-AC-A23H-01 5 65349721 65349721 C T ERBB2IP Nonsense_Mutation p.Q859* 0.23 TCGA-AC-A23H-01 5 65440117 65440117 C G SREK1 5'UTR 0.18 TCGA-AC-A23H-01 5 6620317 6620317 G A NSUN2 Silent p.V239V 0.23 TCGA-AC-A23H-01 5 6620355 6620355 G C NSUN2 Missense_Mutation p.Q227E 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 5 66400326 66400326 G C MAST4 Missense_Mutation p.D427H 0.31 probably_damaging(0.979) TCGA-AC-A23H-01 5 6652121 6652121 G C SRD5A1 Missense_Mutation p.G154R 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 68414339 68414339 G C SLC30A5 Missense_Mutation p.E485Q 0.28 deleterious(0) probably_damaging(0.966) TCGA-AC-A23H-01 5 68463734 68463734 G A CCNB1 Splice_Site p.X8_splice 0.25 TCGA-AC-A23H-01 5 68660630 68660630 C T TAF9 3'UTR 0.33 TCGA-AC-A23H-01 5 68669831 68669831 G C RAD17 Missense_Mutation p.E73Q 0.29 tolerated(0.23) benign(0.014) TCGA-AC-A23H-01 5 72189267 72189267 G C TNPO1 Missense_Mutation p.D654H 0.27 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 5 72311486 72311486 C G FCHO2 Missense_Mutation p.H212D 0.26 deleterious(0) benign(0.054) TCGA-AC-A23H-01 5 73205405 73205405 C T ARHGEF28 Nonsense_Mutation p.Q1444* 0.44 TCGA-AC-A23H-01 5 74325484 74325484 C T GCNT4 Missense_Mutation p.E127K 0.32 deleterious(0.01) benign(0.211) TCGA-AC-A23H-01 5 74655021 74655021 G C HMGCR Missense_Mutation p.M728I 0.21 deleterious(0.01) benign(0.002) TCGA-AC-A23H-01 5 75587084 75587084 G A SV2C Silent p.L392L 0.31 TCGA-AC-A23H-01 5 78411632 78411632 G A BHMT Missense_Mutation p.D26N 0.29 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 5 79025925 79025925 C G CMYA5 Missense_Mutation p.S446C 0.24 possibly_damaging(0.869) TCGA-AC-A23H-01 5 79028541 79028541 C G CMYA5 Nonsense_Mutation p.S1318* 0.15 TCGA-AC-A23H-01 5 79030113 79030113 C G CMYA5 Missense_Mutation p.S1842C 0.17 probably_damaging(0.984) TCGA-AC-A23H-01 5 79032478 79032478 G C CMYA5 Missense_Mutation p.E2630D 0.19 probably_damaging(0.937) TCGA-AC-A23H-01 5 79335996 79335996 C G THBS4 Missense_Mutation p.S62C 0.29 deleterious(0.01) benign(0.001) TCGA-AC-A23H-01 5 79378201 79378201 G T THBS4 Intron 0.25 TCGA-AC-A23H-01 5 79498722 79498722 G T SERINC5 Missense_Mutation p.H60N 0.23 tolerated(0.32) benign(0) TCGA-AC-A23H-01 5 79952348 79952348 C G MSH3 Missense_Mutation p.S119C 0.22 tolerated_low_confidence(0.08) benign(0.235) TCGA-AC-A23H-01 5 80088623 80088623 G A MSH3 Missense_Mutation p.G872E 0.20 deleterious(0.04) possibly_damaging(0.461) TCGA-AC-A23H-01 5 801230 801230 C T ZDHHC11 Missense_Mutation p.E411K 0.44 deleterious_low_confidence(0.05) benign(0.292) TCGA-AC-A23H-01 5 801245 801245 C T ZDHHC11 Missense_Mutation p.D406N 0.42 tolerated_low_confidence(0.59) possibly_damaging(0.539) TCGA-AC-A23H-01 5 80369113 80369113 G C RASGRF2 Missense_Mutation p.K243N 0.22 deleterious(0) benign(0.355) TCGA-AC-A23H-01 5 80369195 80369195 C T RASGRF2 Missense_Mutation p.R271W 0.38 deleterious(0) probably_damaging(0.977) TCGA-AC-A23H-01 5 80382772 80382772 G C RASGRF2 Missense_Mutation p.G464R 0.52 deleterious(0.04) probably_damaging(0.988) TCGA-AC-A23H-01 5 82554396 82554396 G A XRCC4 Missense_Mutation p.D265N 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-AC-A23H-01 5 82837299 82837299 C T VCAN Missense_Mutation p.S2826L 0.22 deleterious(0.01) benign(0.434) TCGA-AC-A23H-01 5 82937395 82937395 C T HAPLN1 Missense_Mutation p.E329K 0.20 deleterious(0.02) possibly_damaging(0.613) TCGA-AC-A23H-01 5 83525691 83525691 C T EDIL3 Missense_Mutation p.E70K 0.25 tolerated_low_confidence(0.68) benign(0.001) TCGA-AC-A23H-01 5 86628382 86628382 G C RASA1 Missense_Mutation p.D251H 0.21 tolerated(0.07) probably_damaging(0.946) TCGA-AC-A23H-01 5 86628395 86628395 A T RASA1 Missense_Mutation p.Y255F 0.22 tolerated(0.12) probably_damaging(0.987) TCGA-AC-A23H-01 5 87564632 87564632 C G TMEM161B 5'UTR 0.26 TCGA-AC-A23H-01 5 891869 891869 G A BRD9 Silent p.Y51Y 0.21 TCGA-AC-A23H-01 5 89757000 89757000 G A MBLAC2 Missense_Mutation p.S275F 0.18 tolerated(0.15) possibly_damaging(0.459) TCGA-AC-A23H-01 5 89969930 89969930 G A GPR98 Silent p.V1663V 0.31 TCGA-AC-A23H-01 5 90046507 90046507 C T GPR98 Missense_Mutation p.S3705L 0.17 possibly_damaging(0.879) TCGA-AC-A23H-01 5 93076278 93076278 C T POU5F2 3'UTR 0.33 TCGA-AC-A23H-01 5 93076442 93076442 C G POU5F2 Missense_Mutation p.E276D 0.21 tolerated(0.06) benign(0.217) TCGA-AC-A23H-01 5 94206646 94206646 C T MCTP1 Silent p.L724L 0.22 TCGA-AC-A23H-01 5 94727171 94727171 C G FAM81B Missense_Mutation p.I26M 0.22 deleterious_low_confidence(0.04) benign(0.158) TCGA-AC-A23H-01 5 94727210 94727210 G A FAM81B Missense_Mutation p.M39I 0.21 deleterious_low_confidence(0.02) benign(0.011) TCGA-AC-A23H-01 5 95194739 95194739 G A C5orf27 3'Flank 0.18 TCGA-AC-A23H-01 5 96097536 96097536 G T ERAP1 3'UTR 0.21 TCGA-AC-A23H-01 5 96119636 96119636 G C ERAP1 Missense_Mutation p.Q698E 0.19 tolerated(0.13) benign(0.023) TCGA-AC-A23H-01 5 96237363 96237363 G C ERAP2 Missense_Mutation p.E576Q 0.15 tolerated(0.22) benign(0.003) TCGA-AC-A23H-01 5 96333778 96333778 C T LNPEP Missense_Mutation p.H528Y 0.22 deleterious(0) possibly_damaging(0.86) TCGA-AC-A23H-01 5 98106316 98106316 G A RGMB 5'UTR 0.15 TCGA-AC-A23H-01 5 98238624 98238624 G C CHD1 Silent p.V139V 0.12 TCGA-AC-A23H-01 6 100382336 100382336 C T MCHR2 Silent p.V215V 0.19 TCGA-AC-A23H-01 6 10410368 10410368 C T TFAP2A Silent p.L82L 0.24 TCGA-AC-A23H-01 6 105243507 105243507 C G HACE1 Missense_Mutation p.K290N 0.22 tolerated(0.05) benign(0.102) TCGA-AC-A23H-01 6 10529249 10529249 G A GCNT2 Silent p.L35L 0.46 TCGA-AC-A23H-01 6 105563577 105563577 G A BVES Silent p.S314S 0.24 TCGA-AC-A23H-01 6 106552744 106552744 G A PRDM1 Missense_Mutation p.E237K 0.27 tolerated(0.52) benign(0.19) TCGA-AC-A23H-01 6 107019711 107019711 C T RTN4IP1 3'Flank 0.38 TCGA-AC-A23H-01 6 10775684 10775684 G C MAK Missense_Mutation p.P492A 0.22 tolerated(0.46) benign(0.067) TCGA-AC-A23H-01 6 108093437 108093437 G A SCML4 Missense_Mutation p.S32L 0.27 deleterious(0.04) benign(0.104) TCGA-AC-A23H-01 6 108197773 108197773 C T SEC63 Missense_Mutation p.E677K 0.22 deleterious(0.01) possibly_damaging(0.463) TCGA-AC-A23H-01 6 109835625 109835625 T G AK9 Missense_Mutation p.T1361P 0.22 deleterious(0.04) probably_damaging(0.945) TCGA-AC-A23H-01 6 109835626 109835626 C T AK9 Silent p.E1360E 0.23 TCGA-AC-A23H-01 6 109871307 109871307 C T AK9 Missense_Mutation p.E984K 0.17 tolerated(0.84) benign(0.001) TCGA-AC-A23H-01 6 109940391 109940391 C T AK9 Missense_Mutation p.E435K 0.24 tolerated(0.29) benign(0.027) TCGA-AC-A23H-01 6 111281801 111281801 G A GTF3C6 Missense_Mutation p.E77K 0.21 deleterious(0.02) probably_damaging(1) TCGA-AC-A23H-01 6 111587262 111587262 C G KIAA1919 Missense_Mutation p.S166C 0.23 tolerated(0.07) possibly_damaging(0.895) TCGA-AC-A23H-01 6 111621076 111621076 C T REV3L 3'UTR 0.22 TCGA-AC-A23H-01 6 111695066 111695066 C T REV3L Missense_Mutation p.E1498K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-AC-A23H-01 6 111696334 111696334 G A REV3L Missense_Mutation p.S1075F 0.21 deleterious(0.04) benign(0.374) TCGA-AC-A23H-01 6 11190431 11190431 G A NEDD9 Silent p.F557F 0.23 TCGA-AC-A23H-01 6 112389545 112389545 G C WISP3 Missense_Mutation p.E261Q 0.34 tolerated(0.27) probably_damaging(0.999) TCGA-AC-A23H-01 6 112435312 112435312 G T LAMA4 Missense_Mutation p.H1765N 0.20 tolerated(0.44) benign(0.201) TCGA-AC-A23H-01 6 112441616 112441616 G C LAMA4 Nonsense_Mutation p.S1512* 0.20 TCGA-AC-A23H-01 6 112450267 112450267 C G LAMA4 Missense_Mutation p.D1382H 0.29 deleterious(0) probably_damaging(0.928) TCGA-AC-A23H-01 6 112528278 112528278 G C LAMA4 Missense_Mutation p.I122M 0.21 tolerated(0.08) possibly_damaging(0.905) TCGA-AC-A23H-01 6 116574844 116574844 C T TSPYL4 Missense_Mutation p.D110N 0.29 tolerated(0.12) benign(0.01) TCGA-AC-A23H-01 6 116720662 116720662 G C DSE Missense_Mutation p.L83F 0.21 deleterious(0.05) possibly_damaging(0.563) TCGA-AC-A23H-01 6 116752196 116752196 G A DSE Silent p.V250V 0.30 TCGA-AC-A23H-01 6 117037438 117037438 C G KPNA5 Nonsense_Mutation p.S238* 0.18 TCGA-AC-A23H-01 6 117127879 117127879 C T GPRC6A Missense_Mutation p.R330K 0.29 tolerated(0.59) benign(0.008) TCGA-AC-A23H-01 6 117609588 117609588 G C ROS1 3'UTR 0.18 TCGA-AC-A23H-01 6 117724314 117724314 G A ROS1 Missense_Mutation p.H189Y 0.22 tolerated(0.36) possibly_damaging(0.765) TCGA-AC-A23H-01 6 118880375 118880375 G C PLN 3'UTR 0.20 TCGA-AC-A23H-01 6 118953630 118953630 G C CEP85L Missense_Mutation p.S76C 0.19 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 6 119281239 119281239 C G FAM184A 3'UTR 0.56 TCGA-AC-A23H-01 6 12161807 12161807 C A HIVEP1 Nonsense_Mutation p.S2208* 0.15 TCGA-AC-A23H-01 6 123130490 123130490 G A SMPDL3A Missense_Mutation p.M433I 0.18 tolerated(0.07) benign(0.043) TCGA-AC-A23H-01 6 125366417 125366417 G A RNF217 Missense_Mutation p.E23K 0.24 deleterious(0.03) possibly_damaging(0.824) TCGA-AC-A23H-01 6 126661370 126661370 G C CENPW 5'UTR 0.16 TCGA-AC-A23H-01 6 127648182 127648182 C G ECHDC1 Missense_Mutation p.D116H 0.12 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 6 127768223 127768223 G A KIAA0408 Missense_Mutation p.S414L 0.15 tolerated(0.27) benign(0.012) TCGA-AC-A23H-01 6 129465144 129465144 G A LAMA2 Silent p.Q246Q 0.19 TCGA-AC-A23H-01 6 129486784 129486784 G A LAMA2 Missense_Mutation p.E424K 0.25 tolerated(0.28) benign(0.008) TCGA-AC-A23H-01 6 129955247 129955247 G C ARHGAP18 Missense_Mutation p.P186A 0.22 tolerated(0.16) benign(0.04) TCGA-AC-A23H-01 6 131908748 131908748 C T MED23 3'UTR 0.24 TCGA-AC-A23H-01 6 132195445 132195445 C A ENPP1 Missense_Mutation p.H535N 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 6 132645114 132645114 C T MOXD1 Missense_Mutation p.E357K 0.30 tolerated(0.12) benign(0.41) TCGA-AC-A23H-01 6 132966222 132966222 G T TAAR1 Missense_Mutation p.F307L 0.21 deleterious(0.02) benign(0.282) TCGA-AC-A23H-01 6 134350155 134350155 G A SLC2A12 Missense_Mutation p.R270C 0.30 deleterious(0.04) benign(0.052) TCGA-AC-A23H-01 6 135271198 135271198 G A ALDH8A1 5'UTR 0.21 TCGA-AC-A23H-01 6 135308808 135308808 G A HBS1L Missense_Mutation p.A402V 0.53 tolerated(0.08) possibly_damaging(0.764) TCGA-AC-A23H-01 6 135768202 135768202 C T AHI1 Missense_Mutation p.E575K 0.19 tolerated(0.18) possibly_damaging(0.546) TCGA-AC-A23H-01 6 136589442 136589442 G T BCLAF1 Nonsense_Mutation p.S752* 0.11 TCGA-AC-A23H-01 6 136599754 136599754 G A BCLAF1 Missense_Mutation p.H89Y 0.08 tolerated_low_confidence(0.28) unknown(0) TCGA-AC-A23H-01 6 136667051 136667051 C T MAP7 Missense_Mutation p.E750K 0.20 tolerated(0.47) unknown(0) TCGA-AC-A23H-01 6 136710561 136710561 C T MAP7 Silent p.Q135Q 0.30 TCGA-AC-A23H-01 6 136901529 136901529 G A MAP3K5 Missense_Mutation p.R1143W 0.25 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 6 137540431 137540431 G A IFNGR1 Nonsense_Mutation p.Q12* 0.38 TCGA-AC-A23H-01 6 137540456 137540456 G C IFNGR1 Silent p.L3L 0.40 TCGA-AC-A23H-01 6 137814838 137814838 G C OLIG3 Missense_Mutation p.S157W 0.33 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 6 138196965 138196965 C G TNFAIP3 Silent p.V209V 0.23 TCGA-AC-A23H-01 6 138610956 138610956 G A KIAA1244 Silent p.V966V 0.18 TCGA-AC-A23H-01 6 139186270 139186270 C G ECT2L Missense_Mutation p.P477A 0.27 tolerated(0.14) possibly_damaging(0.772) TCGA-AC-A23H-01 6 142715042 142715042 G C GPR126 Silent p.L457L 0.20 TCGA-AC-A23H-01 6 143093293 143093293 C T HIVEP2 Silent p.G861G 0.08 TCGA-AC-A23H-01 6 144086657 144086657 G T PHACTR2 Missense_Mutation p.Q318H 0.21 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-AC-A23H-01 6 145148791 145148791 G C UTRN Missense_Mutation p.R3193T 0.31 deleterious(0) probably_damaging(0.978) TCGA-AC-A23H-01 6 146126299 146126299 C T FBXO30 Missense_Mutation p.E415K 0.28 tolerated(0.07) possibly_damaging(0.887) TCGA-AC-A23H-01 6 146256545 146256545 C T SHPRH Missense_Mutation p.E868K 0.28 deleterious(0.02) possibly_damaging(0.593) TCGA-AC-A23H-01 6 146275931 146275931 C T SHPRH Silent p.L176L 0.27 TCGA-AC-A23H-01 6 146276419 146276419 C T SHPRH Missense_Mutation p.D14N 0.25 tolerated_low_confidence(0.09) benign(0.109) TCGA-AC-A23H-01 6 146720347 146720347 G A GRM1 Silent p.L724L 0.21 TCGA-AC-A23H-01 6 146720702 146720702 G A GRM1 Missense_Mutation p.E843K 0.27 deleterious(0.03) possibly_damaging(0.893) TCGA-AC-A23H-01 6 146956641 146956641 G C ADGB Missense_Mutation p.E69Q 0.24 deleterious(0.01) probably_damaging(0.914) TCGA-AC-A23H-01 6 146977959 146977959 G C ADGB Missense_Mutation p.G152A 0.52 tolerated(0.51) benign(0.177) TCGA-AC-A23H-01 6 150001092 150001092 G C LATS1 Missense_Mutation p.R838G 0.23 tolerated(0.28) probably_damaging(0.993) TCGA-AC-A23H-01 6 150005196 150005196 C T LATS1 Silent p.G343G 0.18 TCGA-AC-A23H-01 6 150067514 150067514 C A NUP43 Nonsense_Mutation p.E40* 0.21 TCGA-AC-A23H-01 6 151153181 151153181 G C PLEKHG1 Missense_Mutation p.M978I 0.29 deleterious(0.02) benign(0.049) TCGA-AC-A23H-01 6 151766927 151766927 C T RMND1 Missense_Mutation p.R7K 0.19 tolerated_low_confidence(0.21) benign(0.08) TCGA-AC-A23H-01 6 151773702 151773702 C G C6orf211 Missense_Mutation p.L8V 0.21 deleterious(0.03) possibly_damaging(0.458) TCGA-AC-A23H-01 6 152382234 152382234 C G ESR1 Silent p.L448L 0.19 TCGA-AC-A23H-01 6 152583175 152583175 C G SYNE1 Missense_Mutation p.E6322Q 0.26 possibly_damaging(0.572) TCGA-AC-A23H-01 6 152720940 152720940 G C SYNE1 Missense_Mutation p.Q2350E 0.24 benign(0.001) TCGA-AC-A23H-01 6 152777119 152777119 G C SYNE1 Missense_Mutation p.Q877E 0.17 benign(0.007) TCGA-AC-A23H-01 6 152832713 152832713 C A SYNE1 Intron 0.26 TCGA-AC-A23H-01 6 15507634 15507634 C T JARID2 Silent p.L906L 0.29 TCGA-AC-A23H-01 6 155131280 155131280 G A SCAF8 Missense_Mutation p.R453K 0.23 tolerated(0.05) unknown(0) TCGA-AC-A23H-01 6 155154383 155154383 C T SCAF8 Nonsense_Mutation p.Q1224* 0.14 TCGA-AC-A23H-01 6 155561807 155561807 C T TIAM2 Silent p.I1104I 0.30 TCGA-AC-A23H-01 6 155577920 155577920 C A TIAM2 Missense_Mutation p.Q1591K 0.23 deleterious(0.01) benign(0.137) TCGA-AC-A23H-01 6 157739819 157739819 G A TMEM242 Missense_Mutation p.H108Y 0.24 deleterious(0) probably_damaging(0.959) TCGA-AC-A23H-01 6 158359728 158359728 G C SNX9 Missense_Mutation p.D533H 0.23 deleterious(0.04) probably_damaging(0.981) TCGA-AC-A23H-01 6 158495628 158495628 C T SYNJ2 Missense_Mutation p.S717F 0.22 deleterious(0.01) possibly_damaging(0.862) TCGA-AC-A23H-01 6 158517180 158517180 G C SYNJ2 Missense_Mutation p.L1425F 0.31 tolerated_low_confidence(0.06) benign(0.007) TCGA-AC-A23H-01 6 158569906 158569906 G C SERAC1 Missense_Mutation p.P116A 0.25 deleterious(0.04) benign(0.234) TCGA-AC-A23H-01 6 158571560 158571560 G C SERAC1 Missense_Mutation p.Q64E 0.19 tolerated(0.19) benign(0.004) TCGA-AC-A23H-01 6 159184342 159184342 C T SYTL3 Silent p.L508L 0.22 TCGA-AC-A23H-01 6 159456960 159456960 C T TAGAP Missense_Mutation p.E699K 0.28 deleterious(0.01) probably_damaging(0.927) TCGA-AC-A23H-01 6 159457800 159457800 C T TAGAP Missense_Mutation p.E419K 0.22 tolerated(0.32) benign(0.051) TCGA-AC-A23H-01 6 159462383 159462383 C T TAGAP Intron 0.40 TCGA-AC-A23H-01 6 160240034 160240034 C T PNLDC1 Silent p.V427V 0.26 TCGA-AC-A23H-01 6 160240301 160240301 G T PNLDC1 Silent p.L472L 0.39 TCGA-AC-A23H-01 6 160543036 160543036 C T SLC22A1 Silent p.L23L 0.31 TCGA-AC-A23H-01 6 160670411 160670411 C T SLC22A2 Missense_Mutation p.E227K 0.28 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 6 160874684 160874684 C G SLC22A3 3'Flank 0.24 TCGA-AC-A23H-01 6 161135825 161135825 G C PLG Splice_Site p.X183_splice 0.19 TCGA-AC-A23H-01 6 161523001 161523001 C A MAP3K4 Nonsense_Mutation p.S1251* 0.30 TCGA-AC-A23H-01 6 163149411 163149411 G A PACRG Missense_Mutation p.M48I 0.21 tolerated(0.06) benign(0.065) TCGA-AC-A23H-01 6 16327547 16327547 C T ATXN1 Missense_Mutation p.R332Q 0.29 tolerated(0.19) probably_damaging(0.973) TCGA-AC-A23H-01 6 165957003 165957003 C T PDE10A Missense_Mutation p.D41N 0.18 deleterious(0) probably_damaging(0.962) TCGA-AC-A23H-01 6 166075457 166075457 C T PDE10A Silent p.L15L 0.30 TCGA-AC-A23H-01 6 167366026 167366026 C T RNASET2 Missense_Mutation p.E33K 0.14 tolerated(0.19) benign(0.077) TCGA-AC-A23H-01 6 167550622 167550622 G A CCR6 Missense_Mutation p.E302K 0.19 tolerated(0.1) benign(0.17) TCGA-AC-A23H-01 6 167550684 167550684 G A CCR6 Silent p.K322K 0.18 TCGA-AC-A23H-01 6 167754302 167754302 C T TTLL2 Missense_Mutation p.S305F 0.32 tolerated(0.7) possibly_damaging(0.757) TCGA-AC-A23H-01 6 168307922 168307922 G C MLLT4 Silent p.P574P 0.18 TCGA-AC-A23H-01 6 168323592 168323592 G C MLLT4 Missense_Mutation p.E982Q 0.19 tolerated(0.17) probably_damaging(0.993) TCGA-AC-A23H-01 6 168348607 168348607 G A MLLT4 Missense_Mutation p.G1203R 0.18 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AC-A23H-01 6 169626313 169626313 G T THBS2 Missense_Mutation p.H834N 0.35 tolerated(0.43) benign(0.255) TCGA-AC-A23H-01 6 169648908 169648908 G A THBS2 Silent p.L71L 0.24 TCGA-AC-A23H-01 6 170591850 170591850 C G DLL1 3'UTR 0.22 TCGA-AC-A23H-01 6 17837133 17837133 C T KIF13A Silent p.L377L 0.51 TCGA-AC-A23H-01 6 20483009 20483009 G C E2F3 Missense_Mutation p.E248Q 0.20 deleterious(0.03) benign(0.046) TCGA-AC-A23H-01 6 20483090 20483090 G A E2F3 Missense_Mutation p.E275K 0.28 tolerated(0.17) benign(0.007) TCGA-AC-A23H-01 6 24205386 24205386 G A DCDC2 Intron 0.26 TCGA-AC-A23H-01 6 24460566 24460566 C G GPLD1 Missense_Mutation p.D317H 0.19 deleterious(0.04) benign(0.117) TCGA-AC-A23H-01 6 24596614 24596614 G A KIAA0319 Silent p.I96I 0.45 TCGA-AC-A23H-01 6 25600861 25600861 G T LRRC16A Missense_Mutation p.D1147Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-AC-A23H-01 6 25726344 25726344 C G HIST1H2AA 3'UTR 0.21 TCGA-AC-A23H-01 6 25776933 25776933 C T SLC17A4 Silent p.I366I 0.25 TCGA-AC-A23H-01 6 25921449 25921449 C T SLC17A2 Silent p.V144V 0.23 TCGA-AC-A23H-01 6 26022267 26022267 C T HIST1H4A 3'UTR 0.22 TCGA-AC-A23H-01 6 26027258 26027258 C A HIST1H4B Nonsense_Mutation p.E75* 0.26 TCGA-AC-A23H-01 6 26045645 26045645 C G HIST1H3C Missense_Mutation p.R3G 0.36 deleterious_low_confidence(0.04) benign(0.029) TCGA-AC-A23H-01 6 26056108 26056108 C T HIST1H1C Silent p.K183K 0.27 TCGA-AC-A23H-01 6 26056153 26056153 C G HIST1H1C Missense_Mutation p.K168N 0.18 deleterious(0.02) unknown(0) TCGA-AC-A23H-01 6 26056210 26056210 C G HIST1H1C Missense_Mutation p.K149N 0.18 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 6 26158660 26158660 C A HIST1H2BD Nonsense_Mutation p.S88* 0.35 TCGA-AC-A23H-01 6 26197144 26197144 G T HIST1H3D Missense_Mutation p.A112D 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AC-A23H-01 6 26205070 26205070 G T HIST1H4E Silent p.V66V 0.21 TCGA-AC-A23H-01 6 26234497 26234497 C T HIST1H1D Silent p.%3D 0.21 TCGA-AC-A23H-01 6 26250515 26250515 C T HIST1H3F Missense_Mutation p.D107N 0.30 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-AC-A23H-01 6 26252107 26252107 G A HIST1H2BH Missense_Mutation p.E77K 0.55 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-AC-A23H-01 6 26368278 26368278 G A BTN3A2 Intron 0.25 TCGA-AC-A23H-01 6 26385338 26385338 G A BTN2A2 Missense_Mutation p.E64K 0.25 deleterious(0.03) probably_damaging(0.951) TCGA-AC-A23H-01 6 26385444 26385444 G T BTN2A2 Missense_Mutation p.R99I 0.19 deleterious(0) probably_damaging(0.995) TCGA-AC-A23H-01 6 27114200 27114200 C G HIST1H2BK Missense_Mutation p.K126N 0.16 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-AC-A23H-01 6 27115004 27115004 C T HIST1H2AH Missense_Mutation p.R33C 0.25 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-AC-A23H-01 6 27778004 27778004 G A HIST1H3H Silent p.E51E 0.32 TCGA-AC-A23H-01 6 27782121 27782121 C A HIST1H2AJ 3'UTR 0.23 TCGA-AC-A23H-01 6 27792246 27792246 C T HIST1H4J 3'UTR 0.24 TCGA-AC-A23H-01 6 27798995 27798995 C T HIST1H4K Silent p.%3D 0.20 TCGA-AC-A23H-01 6 27861394 27861394 G A HIST1H2BO Missense_Mutation p.D52N 0.18 deleterious_low_confidence(0.02) benign(0.144) TCGA-AC-A23H-01 6 28060518 28060518 G T ZNF165 3'Flank 0.30 TCGA-AC-A23H-01 6 28116382 28116382 G A ZKSCAN8 Missense_Mutation p.R66Q 0.28 tolerated(0.65) benign(0.023) TCGA-AC-A23H-01 6 28120851 28120851 G A ZKSCAN8 Missense_Mutation p.E265K 0.12 tolerated(0.16) probably_damaging(0.989) TCGA-AC-A23H-01 6 28254875 28254875 C A PGBD1 Nonsense_Mutation p.S191* 0.27 TCGA-AC-A23H-01 6 29141771 29141771 C T OR2J2 Missense_Mutation p.S120L 0.30 deleterious(0) possibly_damaging(0.786) TCGA-AC-A23H-01 6 29454997 29454997 G C MAS1L Missense_Mutation p.S228C 0.25 deleterious(0.04) probably_damaging(0.979) TCGA-AC-A23H-01 6 30882930 30882930 C T VARS2 Intron 0.28 TCGA-AC-A23H-01 6 30918809 30918809 C G DPCR1 Missense_Mutation p.F856L 0.23 tolerated(0.49) benign(0) TCGA-AC-A23H-01 6 3104462 3104462 G C RIPK1 Missense_Mutation p.E307Q 0.23 tolerated(0.52) benign(0.022) TCGA-AC-A23H-01 6 31379030 31379030 G C MICA Missense_Mutation p.L169F 0.22 tolerated(0.06) possibly_damaging(0.751) TCGA-AC-A23H-01 6 31474150 31474150 G C MICB Missense_Mutation p.D186H 0.26 deleterious(0.01) possibly_damaging(0.807) TCGA-AC-A23H-01 6 31593278 31593278 G A PRRC2A Missense_Mutation p.E217K 0.29 unknown(0) TCGA-AC-A23H-01 6 31896598 31896598 G A CFB Intron 0.28 TCGA-AC-A23H-01 6 31939383 31939383 G T DXO Missense_Mutation p.R24S 0.30 tolerated(1) benign(0.001) TCGA-AC-A23H-01 6 31976189 31976189 G A AL645922.1 5'Flank 0.86 TCGA-AC-A23H-01 6 31995117 31995117 C T C4B Silent p.F899F 0.45 TCGA-AC-A23H-01 6 31996782 31996782 C T C4B Missense_Mutation p.H1150Y 0.21 tolerated(0.13) benign(0.026) TCGA-AC-A23H-01 6 33254619 33254619 G C WDR46 Silent p.L356L 0.30 TCGA-AC-A23H-01 6 33263957 33263957 C T RGL2 Missense_Mutation p.D206N 0.23 tolerated(0.42) benign(0.149) TCGA-AC-A23H-01 6 33589434 33589434 G C ITPR3 Missense_Mutation p.E19Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 6 33690682 33690682 G A IP6K3 Nonsense_Mutation p.Q350* 0.49 TCGA-AC-A23H-01 6 33740464 33740464 C G LEMD2 Missense_Mutation p.E485Q 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 6 34950895 34950895 G C ANKS1A Missense_Mutation p.D272H 0.17 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 6 35200679 35200679 G A SCUBE3 Silent p.E174E 0.62 TCGA-AC-A23H-01 6 35543683 35543683 C G FKBP5 Missense_Mutation p.E435Q 0.25 tolerated(0.11) benign(0.025) TCGA-AC-A23H-01 6 35856643 35856643 C T SRPK1 Missense_Mutation p.R84Q 0.16 deleterious(0.01) possibly_damaging(0.535) TCGA-AC-A23H-01 6 36336730 36336730 G A ETV7 Silent p.L261L 0.29 TCGA-AC-A23H-01 6 36790840 36790840 C T CPNE5 Missense_Mutation p.D44N 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-AC-A23H-01 6 36867365 36867365 C T C6orf89 Nonsense_Mutation p.Q56* 0.20 TCGA-AC-A23H-01 6 36929224 36929224 C G PI16 Intron 0.22 TCGA-AC-A23H-01 6 36930768 36930768 C A PI16 Missense_Mutation p.P217Q 0.10 tolerated(0.22) probably_damaging(0.914) TCGA-AC-A23H-01 6 36995793 36995793 C T FGD2 Missense_Mutation p.R608W 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A23H-01 6 38704918 38704918 C G DNAH8 Missense_Mutation p.L63V 0.18 benign(0.001) TCGA-AC-A23H-01 6 38835902 38835902 G C DNAH8 Missense_Mutation p.R2036T 0.26 probably_damaging(0.99) TCGA-AC-A23H-01 6 38913262 38913262 G C DNAH8 Silent p.L3792L 0.26 TCGA-AC-A23H-01 6 38980274 38980274 C G DNAH8 Silent p.L4308L 0.19 TCGA-AC-A23H-01 6 39040635 39040635 C G GLP1R Intron 0.19 TCGA-AC-A23H-01 6 39847003 39847003 C A DAAM2 Missense_Mutation p.S532Y 0.12 deleterious(0.03) benign(0.012) TCGA-AC-A23H-01 6 39851544 39851544 C G DAAM2 Intron 0.41 TCGA-AC-A23H-01 6 4047419 4047419 G C PRPF4B Missense_Mutation p.Q624H 0.24 tolerated(0.06) unknown(0) TCGA-AC-A23H-01 6 4115987 4115987 C G ECI2 3'UTR 0.17 TCGA-AC-A23H-01 6 41177396 41177396 G A TREML3P RNA 0.20 TCGA-AC-A23H-01 6 41755473 41755473 C G TOMM6 Missense_Mutation p.S13W 0.24 tolerated_low_confidence(0.2) benign(0.002) TCGA-AC-A23H-01 6 42175813 42175813 G A MRPS10 3'UTR 0.22 TCGA-AC-A23H-01 6 42181870 42181870 C G MRPS10 Missense_Mutation p.L58F 0.24 tolerated(0.06) benign(0.092) TCGA-AC-A23H-01 6 42612058 42612058 C T UBR2 Missense_Mutation p.S735F 0.27 tolerated(0.29) benign(0.066) TCGA-AC-A23H-01 6 42832738 42832738 C T GLTSCR1L Nonsense_Mutation p.Q932* 0.34 TCGA-AC-A23H-01 6 43013069 43013069 C T CUL7 Silent p.R1062R 0.27 TCGA-AC-A23H-01 6 43017793 43017793 C G CUL7 Missense_Mutation p.E577Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 6 43034900 43034900 C T KLC4 Intron 0.32 TCGA-AC-A23H-01 6 43097566 43097566 C T PTK7 Missense_Mutation p.R165W 0.23 deleterious(0) benign(0.178) TCGA-AC-A23H-01 6 43144324 43144324 C G SRF Missense_Mutation p.Q361E 0.15 deleterious(0) benign(0.042) TCGA-AC-A23H-01 6 43250702 43250702 G A TTBK1 Missense_Mutation p.E742K 0.21 benign(0.023) TCGA-AC-A23H-01 6 43498479 43498479 G A XPO5 Missense_Mutation p.S875L 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 6 43534915 43534915 G A XPO5 Silent p.V275V 0.45 TCGA-AC-A23H-01 6 44081802 44081802 C G MRPL14 Missense_Mutation p.Q72H 0.28 deleterious(0) possibly_damaging(0.489) TCGA-AC-A23H-01 6 44108782 44108782 C T TMEM63B Silent p.F243F 0.37 TCGA-AC-A23H-01 6 44200651 44200651 C G SLC29A1 Silent p.V389V 0.19 TCGA-AC-A23H-01 6 44221044 44221044 C G HSP90AB1 Missense_Mutation p.S665C 0.26 deleterious(0.03) benign(0.059) TCGA-AC-A23H-01 6 44250263 44250263 C T TCTE1 Missense_Mutation p.D294N 0.28 tolerated(0.09) benign(0.02) TCGA-AC-A23H-01 6 44371709 44371709 C G CDC5L Missense_Mutation p.L235V 0.17 tolerated(0.55) benign(0.039) TCGA-AC-A23H-01 6 45399733 45399733 G T RUNX2 Missense_Mutation p.R186I 0.28 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 6 46135933 46135933 G A ENPP5 Missense_Mutation p.L23F 0.27 tolerated(0.21) benign(0.002) TCGA-AC-A23H-01 6 46609906 46609906 G A CYP39A1 Missense_Mutation p.R103C 0.21 deleterious(0.02) possibly_damaging(0.832) TCGA-AC-A23H-01 6 46658722 46658722 G C TDRD6 Missense_Mutation p.E953Q 0.13 deleterious(0.04) benign(0.103) TCGA-AC-A23H-01 6 46659695 46659695 C T TDRD6 Missense_Mutation p.S1277L 0.36 tolerated(0.24) benign(0.003) TCGA-AC-A23H-01 6 46836645 46836645 G A GPR116 Silent p.V532V 0.23 TCGA-AC-A23H-01 6 46847561 46847561 C T GPR116 Missense_Mutation p.D344N 0.29 deleterious(0.04) probably_damaging(0.988) TCGA-AC-A23H-01 6 47254278 47254278 G A TNFRSF21 Silent p.L50L 0.23 TCGA-AC-A23H-01 6 47649126 47649126 C G GPR111 Missense_Mutation p.F277L 0.25 tolerated(0.71) benign(0.002) TCGA-AC-A23H-01 6 51927319 51927319 G A PKHD1 Silent p.F372F 0.17 TCGA-AC-A23H-01 6 52369498 52369498 G A TRAM2 Silent p.F310F 0.23 TCGA-AC-A23H-01 6 52374348 52374348 C T TRAM2 Missense_Mutation p.D150N 0.22 tolerated(0.58) benign(0.005) TCGA-AC-A23H-01 6 52767200 52767200 G A GSTA3 Silent p.L72L 0.44 TCGA-AC-A23H-01 6 52870088 52870088 C T ICK Silent p.L586L 0.44 TCGA-AC-A23H-01 6 52883178 52883178 C T ICK Missense_Mutation p.E205K 0.32 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 6 53519618 53519618 C G KLHL31 Missense_Mutation p.Q151H 0.25 deleterious(0) probably_damaging(0.975) TCGA-AC-A23H-01 6 54173489 54173489 C T TINAG Silent p.F47F 0.25 TCGA-AC-A23H-01 6 54804515 54804515 C T FAM83B Missense_Mutation p.S249L 0.22 deleterious(0) probably_damaging(0.969) TCGA-AC-A23H-01 6 54804577 54804577 G C FAM83B Missense_Mutation p.D270H 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 6 564085 564085 G C EXOC2 Missense_Mutation p.I579M 0.17 deleterious(0.02) benign(0.063) TCGA-AC-A23H-01 6 56433282 56433282 C T DST Missense_Mutation p.A2041T 0.23 benign(0.007) TCGA-AC-A23H-01 6 56443702 56443702 C G DST Missense_Mutation p.A1690P 0.15 possibly_damaging(0.743) TCGA-AC-A23H-01 6 56468733 56468733 C G DST Intron 0.20 TCGA-AC-A23H-01 6 56471129 56471129 C G DST Intron 0.16 TCGA-AC-A23H-01 6 56472845 56472845 G C DST Intron 0.23 TCGA-AC-A23H-01 6 56489957 56489957 C G DST Missense_Mutation p.E1073Q 0.28 probably_damaging(0.999) TCGA-AC-A23H-01 6 56490042 56490042 C T DST Missense_Mutation p.M1044I 0.24 probably_damaging(0.986) TCGA-AC-A23H-01 6 56490056 56490056 C T DST Missense_Mutation p.E1040K 0.22 probably_damaging(0.998) TCGA-AC-A23H-01 6 56708069 56708069 G A RP11-472M19.2 5'Flank 0.42 TCGA-AC-A23H-01 6 57048783 57048783 C G BAG2 Missense_Mutation p.S144C 0.31 deleterious(0.04) probably_damaging(0.985) TCGA-AC-A23H-01 6 5771737 5771737 G A FARS2 3'Flank 0.28 TCGA-AC-A23H-01 6 599106 599106 G C EXOC2 Missense_Mutation p.L288V 0.29 tolerated(0.16) possibly_damaging(0.899) TCGA-AC-A23H-01 6 64394966 64394966 C G PHF3 Nonsense_Mutation p.S448* 0.26 TCGA-AC-A23H-01 6 64574130 64574130 C G EYS Missense_Mutation p.D2393H 0.37 deleterious(0.01) probably_damaging(0.976) TCGA-AC-A23H-01 6 656123 656123 G C HUS1B Missense_Mutation p.F274L 0.23 deleterious(0.03) benign(0.01) TCGA-AC-A23H-01 6 71003884 71003884 G A COL9A1 Nonsense_Mutation p.Q228* 0.39 TCGA-AC-A23H-01 6 71562240 71562240 C T SMAP1 Intron 0.17 TCGA-AC-A23H-01 6 72967902 72967902 C A RIMS1 Missense_Mutation p.H949N 0.46 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 6 7310233 7310233 C G SSR1 Missense_Mutation p.E37Q 0.22 tolerated(0.14) possibly_damaging(0.673) TCGA-AC-A23H-01 6 73713683 73713683 G A KCNQ5 Missense_Mutation p.E151K 0.21 deleterious(0.01) benign(0.032) TCGA-AC-A23H-01 6 73904320 73904320 T C KCNQ5 Missense_Mutation p.V680A 0.47 tolerated(0.47) benign(0.02) TCGA-AC-A23H-01 6 74201994 74201994 G T MTO1 Missense_Mutation p.D599Y 0.14 deleterious(0) possibly_damaging(0.596) TCGA-AC-A23H-01 6 74472525 74472525 C T CD109 Missense_Mutation p.S306L 0.48 tolerated(0.16) benign(0.021) TCGA-AC-A23H-01 6 74512982 74512982 C G CD109 Missense_Mutation p.S973C 0.31 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 6 74524785 74524785 G C CD109 Missense_Mutation p.D1284H 0.19 deleterious(0.02) possibly_damaging(0.701) TCGA-AC-A23H-01 6 75828832 75828832 C A COL12A1 Missense_Mutation p.K2427N 0.26 probably_damaging(0.948) TCGA-AC-A23H-01 6 75861682 75861682 G T COL12A1 Silent p.R1301R 0.28 TCGA-AC-A23H-01 6 75866204 75866204 C T COL12A1 Missense_Mutation p.E1007K 0.26 probably_damaging(0.969) TCGA-AC-A23H-01 6 76072469 76072469 C T FILIP1 Silent p.P147P 0.24 TCGA-AC-A23H-01 6 76595747 76595747 G T MYO6 Nonsense_Mutation p.E815* 0.24 TCGA-AC-A23H-01 6 76640746 76640746 C G IMPG1 Missense_Mutation p.D723H 0.29 tolerated(0.57) benign(0.031) TCGA-AC-A23H-01 6 79577322 79577322 G C IRAK1BP1 Missense_Mutation p.R10P 0.29 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 6 80656978 80656978 C G ELOVL4 Missense_Mutation p.E7Q 0.28 tolerated_low_confidence(0.28) benign(0.002) TCGA-AC-A23H-01 6 83863761 83863761 C A DOPEY1 Missense_Mutation p.H2130N 0.23 tolerated(0.06) benign(0.253) TCGA-AC-A23H-01 6 84368766 84368766 C G SNAP91 Missense_Mutation p.K166N 0.18 deleterious(0) unknown(0) TCGA-AC-A23H-01 6 84634186 84634186 C A CYB5R4 Intron 0.22 TCGA-AC-A23H-01 6 86243395 86243395 G T SNX14 Missense_Mutation p.P578T 0.21 tolerated(0.65) benign(0.003) TCGA-AC-A23H-01 6 86253353 86253353 C G SNX14 Missense_Mutation p.D412H 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A23H-01 6 86324419 86324419 G C SYNCRIP 3'UTR 0.30 TCGA-AC-A23H-01 6 86325022 86325022 G A SYNCRIP Missense_Mutation p.P442S 0.28 tolerated(0.17) unknown(0) TCGA-AC-A23H-01 6 87725863 87725863 G A HTR1E Missense_Mutation p.D271N 0.48 tolerated(0.49) possibly_damaging(0.464) TCGA-AC-A23H-01 6 87967251 87967251 G C ZNF292 Missense_Mutation p.E1302Q 0.30 tolerated(0.25) possibly_damaging(0.623) TCGA-AC-A23H-01 6 87968832 87968832 G A ZNF292 Missense_Mutation p.E1829K 0.33 tolerated(0.06) benign(0.019) TCGA-AC-A23H-01 6 87970159 87970159 C A ZNF292 Nonsense_Mutation p.S2271* 0.21 TCGA-AC-A23H-01 6 89859062 89859062 C G PM20D2 Missense_Mutation p.L182V 0.26 tolerated(0.55) benign(0.041) TCGA-AC-A23H-01 6 89859097 89859097 G C PM20D2 Missense_Mutation p.E193D 0.18 tolerated(0.39) benign(0.012) TCGA-AC-A23H-01 6 90392967 90392967 C G MDN1 Missense_Mutation p.E3996Q 0.19 possibly_damaging(0.68) TCGA-AC-A23H-01 6 90400419 90400419 G T MDN1 Missense_Mutation p.F3574L 0.19 benign(0.033) TCGA-AC-A23H-01 6 90405449 90405449 C G MDN1 Missense_Mutation p.E3216Q 0.38 benign(0.059) TCGA-AC-A23H-01 6 90409323 90409323 C T MDN1 Silent p.Q2998Q 0.22 TCGA-AC-A23H-01 6 90442382 90442382 C T MDN1 Missense_Mutation p.M1612I 0.27 benign(0.034) TCGA-AC-A23H-01 6 90461177 90461177 C G MDN1 Missense_Mutation p.R1067T 0.26 possibly_damaging(0.821) TCGA-AC-A23H-01 6 90573820 90573820 A C CASP8AP2 RNA 0.27 TCGA-AC-A23H-01 6 90575899 90575899 C T CASP8AP2 RNA 0.19 TCGA-AC-A23H-01 6 93973611 93973611 C T EPHA7 Missense_Mutation p.D589N 0.17 tolerated(0.36) benign(0.025) TCGA-AC-A23H-01 6 99283822 99283822 G A POU3F2 Missense_Mutation p.R358Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 6 99283859 99283859 G T POU3F2 Missense_Mutation p.E370D 0.33 deleterious(0) probably_damaging(0.96) TCGA-AC-A23H-01 6 99328466 99328466 G A FBXL4 Missense_Mutation p.S451L 0.29 tolerated(0.08) benign(0.012) TCGA-AC-A23H-01 7 100028177 100028177 C G MEPCE Missense_Mutation p.S179C 0.31 tolerated(0.11) possibly_damaging(0.695) TCGA-AC-A23H-01 7 100033135 100033135 C G PPP1R35 Missense_Mutation p.D204H 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 7 100054573 100054573 C T C7orf61 Silent p.V141V 0.30 TCGA-AC-A23H-01 7 100170192 100170192 C T SAP25 Missense_Mutation p.M106I 0.38 tolerated(0.07) benign(0) TCGA-AC-A23H-01 7 100175466 100175466 C T LRCH4 Missense_Mutation p.E340K 0.35 deleterious(0.01) benign(0.156) TCGA-AC-A23H-01 7 100205426 100205426 G A PCOLCE Silent p.K393K 0.31 TCGA-AC-A23H-01 7 100352904 100352904 G A ZAN Silent p.K1060K 0.41 TCGA-AC-A23H-01 7 100454733 100454733 C A SLC12A9 Missense_Mutation p.S231Y 0.17 deleterious(0.03) benign(0.105) TCGA-AC-A23H-01 7 100484670 100484670 C G SRRT Silent p.V608V 0.25 TCGA-AC-A23H-01 7 100490265 100490265 C T ACHE Missense_Mutation p.D415N 0.39 tolerated(0.06) probably_damaging(1) TCGA-AC-A23H-01 7 100797729 100797729 T G AP1S1 5'UTR 0.50 TCGA-AC-A23H-01 7 100867000 100867000 G A ZNHIT1 Missense_Mutation p.G107E 0.37 tolerated(0.18) benign(0) TCGA-AC-A23H-01 7 101845014 101845014 G C CUX1 Missense_Mutation p.E824Q 0.13 deleterious(0) unknown(0) TCGA-AC-A23H-01 7 102108582 102108582 C T LRWD1 Missense_Mutation p.S251F 0.22 deleterious(0.03) benign(0.013) TCGA-AC-A23H-01 7 102957367 102957367 C A DNAJC2 Missense_Mutation p.G446V 0.17 tolerated(0.22) benign(0.02) TCGA-AC-A23H-01 7 103018192 103018192 C G SLC26A5 Missense_Mutation p.V614L 0.22 tolerated(0.93) benign(0.016) TCGA-AC-A23H-01 7 103207129 103207129 C T RELN Missense_Mutation p.E1556K 0.31 tolerated(0.06) probably_damaging(0.991) TCGA-AC-A23H-01 7 103473983 103473983 C T RELN Splice_Site p.X158_splice 0.24 TCGA-AC-A23H-01 7 103844671 103844671 G A ORC5 Silent p.F28F 0.33 TCGA-AC-A23H-01 7 104807828 104807828 C G SRPK2 Silent p.G170G 0.17 TCGA-AC-A23H-01 7 105098242 105098242 G A PUS7 Missense_Mutation p.R661C 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A23H-01 7 105279964 105279964 C G ATXN7L1 Missense_Mutation p.K305N 0.19 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 7 105635275 105635275 G C CDHR3 Missense_Mutation p.E198Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 7 106509742 106509742 G C PIK3CG Missense_Mutation p.R579T 0.15 deleterious(0.04) probably_damaging(0.994) TCGA-AC-A23H-01 7 106545845 106545845 G C PIK3CG 3'UTR 0.45 TCGA-AC-A23H-01 7 106793646 106793646 G C PRKAR2B Missense_Mutation p.D290H 0.09 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 7 106850996 106850996 C G COG5 Missense_Mutation p.E815Q 0.40 deleterious(0) probably_damaging(0.991) TCGA-AC-A23H-01 7 107167692 107167692 G A COG5 Silent p.L207L 0.22 TCGA-AC-A23H-01 7 107262380 107262380 C G BCAP29 3'UTR 0.26 TCGA-AC-A23H-01 7 107312589 107312589 C T SLC26A4 Missense_Mutation p.A104V 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 7 107329622 107329622 G A SLC26A4 Missense_Mutation p.D376N 0.14 tolerated(0.13) benign(0.026) TCGA-AC-A23H-01 7 107692599 107692599 C T LAMB4 Missense_Mutation p.E1287K 0.16 tolerated(0.1) benign(0.015) TCGA-AC-A23H-01 7 107696107 107696107 A T LAMB4 Nonsense_Mutation p.L1242* 0.41 TCGA-AC-A23H-01 7 107866111 107866111 C G NRCAM Missense_Mutation p.L252F 0.31 tolerated(0.4) probably_damaging(0.999) TCGA-AC-A23H-01 7 107880462 107880462 C G NRCAM Missense_Mutation p.R16T 0.18 tolerated(0.24) benign(0.083) TCGA-AC-A23H-01 7 110764740 110764740 G C LRRN3 Missense_Mutation p.G638R 0.22 deleterious(0.01) possibly_damaging(0.878) TCGA-AC-A23H-01 7 11091322 11091322 G A PHF14 Missense_Mutation p.R799Q 0.16 deleterious(0) probably_damaging(0.96) TCGA-AC-A23H-01 7 11101419 11101419 G C PHF14 Missense_Mutation p.R828T 0.15 deleterious(0.04) benign(0.15) TCGA-AC-A23H-01 7 111517158 111517158 G C DOCK4 Missense_Mutation p.Q558E 0.26 tolerated(1) benign(0.026) TCGA-AC-A23H-01 7 111935989 111935989 G A ZNF277 Missense_Mutation p.R120K 0.20 tolerated(0.43) benign(0.027) TCGA-AC-A23H-01 7 1132068 1132068 C T GPER1 Missense_Mutation p.S235F 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-AC-A23H-01 7 113519643 113519643 C T PPP1R3A Missense_Mutation p.E502K 0.22 tolerated(0.17) benign(0.025) TCGA-AC-A23H-01 7 113558909 113558909 G C PPP1R3A Missense_Mutation p.S48C 0.21 deleterious(0) possibly_damaging(0.507) TCGA-AC-A23H-01 7 11450849 11450849 C T THSD7A Silent p.L1261L 0.20 TCGA-AC-A23H-01 7 115580585 115580585 G C TFEC 3'UTR 0.15 TCGA-AC-A23H-01 7 11581254 11581254 G A THSD7A Silent p.F538F 0.26 TCGA-AC-A23H-01 7 116166580 116166580 G C CAV1 Missense_Mutation p.G11A 0.38 tolerated_low_confidence(0.07) benign(0.079) TCGA-AC-A23H-01 7 116395450 116395450 G A MET Silent p.L581L 0.37 TCGA-AC-A23H-01 7 116411936 116411936 G C MET Missense_Mutation p.R992T 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-AC-A23H-01 7 117170990 117170990 G C CFTR Missense_Mutation p.R104T 0.09 deleterious(0.03) benign(0.159) TCGA-AC-A23H-01 7 117267675 117267675 G C CFTR Missense_Mutation p.V1190L 0.25 tolerated(0.27) benign(0.21) TCGA-AC-A23H-01 7 117450836 117450836 C T CTTNBP2 Missense_Mutation p.E133K 0.24 deleterious(0.03) probably_damaging(1) TCGA-AC-A23H-01 7 120595875 120595875 G A ING3 Intron 0.22 TCGA-AC-A23H-01 7 121755167 121755167 G A AASS Missense_Mutation p.S335L 0.19 tolerated(0.74) benign(0.021) TCGA-AC-A23H-01 7 121769564 121769564 G A AASS Nonsense_Mutation p.Q80* 0.40 TCGA-AC-A23H-01 7 122081579 122081579 G A CADPS2 Missense_Mutation p.S780L 0.33 deleterious(0.03) possibly_damaging(0.881) TCGA-AC-A23H-01 7 122526107 122526107 G T CADPS2 Silent p.I95I 0.29 TCGA-AC-A23H-01 7 122774486 122774486 G T SLC13A1 Missense_Mutation p.Q304K 0.36 deleterious(0.01) possibly_damaging(0.734) TCGA-AC-A23H-01 7 122811951 122811951 G C SLC13A1 Missense_Mutation p.S79C 0.21 tolerated(0.18) probably_damaging(0.992) TCGA-AC-A23H-01 7 123104907 123104907 C T IQUB Missense_Mutation p.E580K 0.31 deleterious(0.03) benign(0.178) TCGA-AC-A23H-01 7 123303222 123303222 G A LMOD2 Missense_Mutation p.A528T 0.23 deleterious(0.01) possibly_damaging(0.628) TCGA-AC-A23H-01 7 12728288 12728288 G C ARL4A Missense_Mutation p.D137H 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 7 12728307 12728307 C T ARL4A Missense_Mutation p.S143L 0.19 tolerated(0.11) benign(0.197) TCGA-AC-A23H-01 7 128486124 128486124 C G FLNC Missense_Mutation p.R1291G 0.30 tolerated(0.16) benign(0.015) TCGA-AC-A23H-01 7 128519576 128519576 C T KCP Intron 0.44 TCGA-AC-A23H-01 7 128630066 128630066 C A TNPO3 Nonsense_Mutation p.E483* 0.19 TCGA-AC-A23H-01 7 128658037 128658037 C G TNPO3 Missense_Mutation p.D99H 0.35 deleterious(0.01) benign(0.029) TCGA-AC-A23H-01 7 129916570 129916570 C T CPA2 Nonsense_Mutation p.Q230* 0.32 TCGA-AC-A23H-01 7 130295837 130295837 C G COPG2 Missense_Mutation p.E242Q 0.25 deleterious(0.03) benign(0.417) TCGA-AC-A23H-01 7 130418145 130418145 G C KLF14 Missense_Mutation p.S239C 0.22 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 7 131815142 131815142 G A PLXNA4 3'UTR 0.30 TCGA-AC-A23H-01 7 132169688 132169688 G A PLXNA4 Intron 0.23 TCGA-AC-A23H-01 7 132174105 132174105 G C PLXNA4 Silent p.V439V 0.15 TCGA-AC-A23H-01 7 132937919 132937919 C T EXOC4 Missense_Mutation p.S21L 0.17 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 7 134617752 134617752 G A CALD1 Missense_Mutation p.E78K 0.20 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 7 134672694 134672694 G C AGBL3 Missense_Mutation p.D4H 0.41 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-AC-A23H-01 7 134849412 134849412 G C TMEM140 Silent p.L73L 0.37 TCGA-AC-A23H-01 7 135323340 135323340 C T NUP205 Silent p.L1767L 0.22 TCGA-AC-A23H-01 7 135333376 135333376 C A NUP205 3'UTR 0.18 TCGA-AC-A23H-01 7 135358950 135358950 C G C7orf73 3'UTR 0.18 TCGA-AC-A23H-01 7 138430011 138430011 G A ATP6V0A4 Silent p.F445F 0.23 TCGA-AC-A23H-01 7 138529164 138529164 G A KIAA1549 Nonsense_Mutation p.Q1784* 0.17 TCGA-AC-A23H-01 7 138601600 138601600 C T KIAA1549 Silent p.V924V 0.37 TCGA-AC-A23H-01 7 138603449 138603449 G C KIAA1549 Nonsense_Mutation p.S308* 0.24 TCGA-AC-A23H-01 7 138872262 138872262 G A TTC26 Missense_Mutation p.M510I 0.28 tolerated(0.14) benign(0.017) TCGA-AC-A23H-01 7 138946316 138946316 C T UBN2 Silent p.F408F 0.18 TCGA-AC-A23H-01 7 139102445 139102445 G A LUC7L2 Missense_Mutation p.R390K 0.15 tolerated(0.21) unknown(0) TCGA-AC-A23H-01 7 139102459 139102459 G C LUC7L2 Missense_Mutation p.E395Q 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-AC-A23H-01 7 139799810 139799810 G C KDM7A Missense_Mutation p.S551C 0.34 deleterious(0.03) possibly_damaging(0.88) TCGA-AC-A23H-01 7 140373731 140373731 G C ADCK2 Missense_Mutation p.E201Q 0.26 tolerated(0.12) benign(0.058) TCGA-AC-A23H-01 7 140386848 140386848 G A ADCK2 Missense_Mutation p.G455D 0.23 tolerated(0.06) possibly_damaging(0.898) TCGA-AC-A23H-01 7 140481463 140481463 C T BRAF Missense_Mutation p.D449N 0.17 tolerated(0.67) possibly_damaging(0.602) TCGA-AC-A23H-01 7 141293140 141293140 G A AGK Intron 0.26 TCGA-AC-A23H-01 7 141490369 141490369 C T TAS2R5 Missense_Mutation p.P70S 0.32 tolerated(0.51) benign(0.028) TCGA-AC-A23H-01 7 142119872 142119872 G T TRBV7-7 Missense_Mutation p.Q99K 0.23 tolerated(0.09) benign(0.107) TCGA-AC-A23H-01 7 142176556 142176556 G C TRBV7-4 Silent p.L40L 0.20 TCGA-AC-A23H-01 7 142247585 142247585 G A TRBV7-3 5'UTR 0.29 TCGA-AC-A23H-01 7 142836808 142836808 C T PIP 3'UTR 0.27 TCGA-AC-A23H-01 7 143090942 143090942 C A EPHA1 Nonsense_Mutation p.E840* 0.19 TCGA-AC-A23H-01 7 144068317 144068317 C T ARHGEF5 Missense_Mutation p.H1199Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 7 144097244 144097244 C T NOBOX Missense_Mutation p.E336K 0.12 tolerated(0.27) benign(0.041) TCGA-AC-A23H-01 7 144097267 144097267 C A NOBOX Missense_Mutation p.W328L 0.26 tolerated(0.68) benign(0.041) TCGA-AC-A23H-01 7 146805303 146805303 G A CNTNAP2 Missense_Mutation p.M205I 0.18 tolerated(0.16) benign(0.009) TCGA-AC-A23H-01 7 1482088 1482088 G C MICALL2 Missense_Mutation p.S484C 0.26 tolerated(0.05) benign(0.043) TCGA-AC-A23H-01 7 148768317 148768317 C G ZNF786 Missense_Mutation p.R516T 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-AC-A23H-01 7 148769161 148769161 G A ZNF786 Missense_Mutation p.R235W 0.47 tolerated(0.23) benign(0.002) TCGA-AC-A23H-01 7 148863295 148863295 G C ZNF398 Missense_Mutation p.E156Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 7 148909462 148909462 C T ZNF282 Missense_Mutation p.S322F 0.24 deleterious(0) possibly_damaging(0.786) TCGA-AC-A23H-01 7 148950660 148950660 C T ZNF212 Silent p.V214V 0.26 TCGA-AC-A23H-01 7 148975600 148975600 C T ZNF783 Missense_Mutation p.P262S 0.31 tolerated(0.26) benign(0.061) TCGA-AC-A23H-01 7 149476192 149476192 C A SSPO RNA 0.25 TCGA-AC-A23H-01 7 149484608 149484608 C G SSPO RNA 0.41 TCGA-AC-A23H-01 7 149576677 149576677 C G ATP6V0E2 Missense_Mutation p.L185V 0.40 deleterious_low_confidence(0) benign(0.364) TCGA-AC-A23H-01 7 150171337 150171337 C A GIMAP8 Nonsense_Mutation p.S307* 0.16 TCGA-AC-A23H-01 7 150269546 150269546 G C GIMAP4 Missense_Mutation p.E130Q 0.37 deleterious(0.02) possibly_damaging(0.817) TCGA-AC-A23H-01 7 150439311 150439311 G C GIMAP5 Missense_Mutation p.L28F 0.11 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 7 150558196 150558196 C A AOC1 Silent p.R719R 0.40 TCGA-AC-A23H-01 7 150649938 150649938 G A KCNH2 Silent p.L378L 0.15 TCGA-AC-A23H-01 7 150746182 150746182 C G ASIC3 Missense_Mutation p.F70L 0.27 deleterious(0.03) benign(0.298) TCGA-AC-A23H-01 7 150747313 150747313 G A ASIC3 Missense_Mutation p.E219K 0.16 deleterious(0) benign(0.318) TCGA-AC-A23H-01 7 150768795 150768795 G A SLC4A2 Silent p.L737L 0.45 TCGA-AC-A23H-01 7 150771920 150771920 G C SLC4A2 Missense_Mutation p.Q1013H 0.18 deleterious(0.05) probably_damaging(0.985) TCGA-AC-A23H-01 7 151711821 151711821 C T GALNTL5 Silent p.I373I 0.36 TCGA-AC-A23H-01 7 151818672 151818672 G A GALNT11 Silent p.L579L 0.36 TCGA-AC-A23H-01 7 151845871 151845871 C T KMT2C Missense_Mutation p.E4381K 0.18 possibly_damaging(0.614) TCGA-AC-A23H-01 7 151845880 151845880 C T KMT2C Missense_Mutation p.E4378K 0.14 probably_damaging(0.995) TCGA-AC-A23H-01 7 151845982 151845982 C G KMT2C Missense_Mutation p.D4344H 0.27 probably_damaging(0.954) TCGA-AC-A23H-01 7 151859492 151859492 C T KMT2C Missense_Mutation p.E3724K 0.20 benign(0.41) TCGA-AC-A23H-01 7 151859845 151859845 C G KMT2C Missense_Mutation p.R3606T 0.19 probably_damaging(0.998) TCGA-AC-A23H-01 7 151859856 151859856 C T KMT2C Silent p.G3602G 0.23 TCGA-AC-A23H-01 7 151860015 151860015 C T KMT2C Silent p.V3549V 0.21 TCGA-AC-A23H-01 7 151860872 151860872 C T KMT2C Missense_Mutation p.D3264N 0.20 possibly_damaging(0.881) TCGA-AC-A23H-01 7 151877802 151877802 C T KMT2C Silent p.L2381L 0.19 TCGA-AC-A23H-01 7 151917668 151917668 G A KMT2C Nonsense_Mutation p.Q1218* 0.37 TCGA-AC-A23H-01 7 152511644 152511644 C G ACTR3B Missense_Mutation p.P116A 0.23 deleterious(0.04) possibly_damaging(0.679) TCGA-AC-A23H-01 7 1533499 1533499 C T INTS1 Silent p.L653L 0.44 TCGA-AC-A23H-01 7 1536831 1536831 G T INTS1 Missense_Mutation p.F515L 0.27 tolerated(0.19) benign(0.02) TCGA-AC-A23H-01 7 1539986 1539986 C T INTS1 Silent p.L122L 0.44 TCGA-AC-A23H-01 7 154172044 154172044 C G DPP6 Missense_Mutation p.Q127E 0.17 tolerated(0.27) benign(0.277) TCGA-AC-A23H-01 7 154659713 154659713 G C DPP6 Missense_Mutation p.D575H 0.20 tolerated(0.13) possibly_damaging(0.57) TCGA-AC-A23H-01 7 155471326 155471326 G C RBM33 Missense_Mutation p.E66Q 0.17 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 7 15584539 15584539 G A AGMO Silent p.F89F 0.29 TCGA-AC-A23H-01 7 158447914 158447914 C T NCAPG2 Missense_Mutation p.E848K 0.18 tolerated(0.28) benign(0.006) TCGA-AC-A23H-01 7 158486140 158486140 G C NCAPG2 Nonsense_Mutation p.S43* 0.18 TCGA-AC-A23H-01 7 158935171 158935171 C T VIPR2 Missense_Mutation p.E40K 0.26 tolerated(0.22) benign(0.01) TCGA-AC-A23H-01 7 158935192 158935192 C T VIPR2 Missense_Mutation p.E33K 0.16 tolerated(0.96) benign(0.006) TCGA-AC-A23H-01 7 16650204 16650204 C T ANKMY2 Missense_Mutation p.G239E 0.23 tolerated(0.3) benign(0.007) TCGA-AC-A23H-01 7 18705919 18705919 G C HDAC9 Silent p.A517A 0.21 TCGA-AC-A23H-01 7 19738341 19738341 G C TWISTNB Missense_Mutation p.F205L 0.26 tolerated(0.84) benign(0.001) TCGA-AC-A23H-01 7 20199081 20199081 G A MACC1 Silent p.F301F 0.30 TCGA-AC-A23H-01 7 20444323 20444323 C T ITGB8 Missense_Mutation p.S587L 0.28 tolerated(0.51) benign(0.002) TCGA-AC-A23H-01 7 21469372 21469372 C T SP4 Nonsense_Mutation p.Q197* 0.17 TCGA-AC-A23H-01 7 21657332 21657332 C A DNAH11 Silent p.I1402I 0.22 TCGA-AC-A23H-01 7 21840887 21840887 G C DNAH11 Missense_Mutation p.E3394Q 0.18 benign(0.098) TCGA-AC-A23H-01 7 23737855 23737855 G T FAM221A Missense_Mutation p.D228Y 0.22 deleterious(0) possibly_damaging(0.878) TCGA-AC-A23H-01 7 2618127 2618127 G C IQCE Silent p.R199R 0.25 TCGA-AC-A23H-01 7 26223397 26223397 C T NFE2L3 Missense_Mutation p.S276L 0.30 tolerated(0.23) benign(0.006) TCGA-AC-A23H-01 7 26232920 26232920 C G HNRNPA2B1 Missense_Mutation p.K317N 0.32 deleterious(0.03) benign(0.002) TCGA-AC-A23H-01 7 26237026 26237026 G A HNRNPA2B1 Missense_Mutation p.S70L 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A23H-01 7 26240296 26240296 G T HNRNPA2B1 5'UTR 0.26 TCGA-AC-A23H-01 7 26765161 26765161 C T SKAP2 Missense_Mutation p.E228K 0.15 deleterious(0.04) probably_damaging(0.964) TCGA-AC-A23H-01 7 2696029 2696029 C T TTYH3 Intron 0.34 TCGA-AC-A23H-01 7 27196220 27196220 G A HOXA7 5'UTR 0.43 TCGA-AC-A23H-01 7 27224793 27224793 G A HOXA11 5'UTR 0.38 TCGA-AC-A23H-01 7 2770816 2770816 C T GNA12 Silent p.%3D 0.22 TCGA-AC-A23H-01 7 2771103 2771103 G A GNA12 Silent p.F286F 0.23 TCGA-AC-A23H-01 7 30087519 30087519 C T PLEKHA8 Nonsense_Mutation p.Q129* 0.41 TCGA-AC-A23H-01 7 30795236 30795236 C G INMT Silent p.L187L 0.19 TCGA-AC-A23H-01 7 32598867 32598867 C T AVL9 Missense_Mutation p.P336S 0.18 tolerated(0.12) benign(0.364) TCGA-AC-A23H-01 7 32909850 32909850 G T KBTBD2 Missense_Mutation p.L327M 0.22 tolerated(0.24) benign(0.268) TCGA-AC-A23H-01 7 32909875 32909875 G T KBTBD2 Silent p.I318I 0.19 TCGA-AC-A23H-01 7 33055431 33055431 C A NT5C3A Missense_Mutation p.D254Y 0.14 deleterious(0.01) benign(0.095) TCGA-AC-A23H-01 7 33136887 33136887 C G RP9 Missense_Mutation p.R134T 0.26 deleterious(0.02) benign(0.002) TCGA-AC-A23H-01 7 35930340 35930340 G A SEPT7 Missense_Mutation p.R313K 0.20 tolerated(0.26) benign(0.012) TCGA-AC-A23H-01 7 36338800 36338800 C G EEPD1 Missense_Mutation p.I565M 0.18 tolerated(0.22) benign(0.044) TCGA-AC-A23H-01 7 36901266 36901266 C G ELMO1 Missense_Mutation p.E661Q 0.19 tolerated(0.16) probably_damaging(0.942) TCGA-AC-A23H-01 7 37136305 37136305 C G ELMO1 Missense_Mutation p.D407H 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 7 38279377 38279377 G C TRGC2 3'UTR 0.46 TCGA-AC-A23H-01 7 38389494 38389494 C T TRGV5 5'UTR 0.21 TCGA-AC-A23H-01 7 38431463 38431463 C A AMPH Missense_Mutation p.Q588H 0.27 deleterious(0.04) benign(0.372) TCGA-AC-A23H-01 7 3861174 3861174 G A SDK1 Missense_Mutation p.G269E 0.24 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 7 40027724 40027724 C G CDK13 Missense_Mutation p.L580V 0.11 tolerated(0.95) benign(0.004) TCGA-AC-A23H-01 7 40085603 40085603 C T CDK13 Missense_Mutation p.S841F 0.29 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 7 4167016 4167016 C T SDK1 Missense_Mutation p.P1276L 0.24 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 7 43635678 43635678 G C STK17A Missense_Mutation p.E129Q 0.52 deleterious(0.03) probably_damaging(0.997) TCGA-AC-A23H-01 7 43664136 43664136 G C STK17A Missense_Mutation p.E314Q 0.36 tolerated(0.39) benign(0.256) TCGA-AC-A23H-01 7 43917189 43917189 C T URGCP Missense_Mutation p.E625K 0.14 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 7 44099153 44099153 G A DBNL Missense_Mutation p.E324K 0.15 tolerated(0.57) benign(0.008) TCGA-AC-A23H-01 7 44112992 44112992 G A POLM Intron 0.28 TCGA-AC-A23H-01 7 44119319 44119319 C T POLM Missense_Mutation p.E165K 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A23H-01 7 44150827 44150827 G A AEBP1 Missense_Mutation p.D569N 0.18 deleterious(0) probably_damaging(0.968) TCGA-AC-A23H-01 7 44151894 44151894 G A AEBP1 Missense_Mutation p.E731K 0.16 deleterious(0.03) possibly_damaging(0.88) TCGA-AC-A23H-01 7 44180338 44180338 C T MYL7 Missense_Mutation p.D56N 0.53 deleterious(0.04) probably_damaging(1) TCGA-AC-A23H-01 7 44240737 44240737 G A YKT6 Translation_Start_Site p.M1? 0.29 deleterious(0) benign(0.373) TCGA-AC-A23H-01 7 44240771 44240771 G A YKT6 Missense_Mutation p.E13K 0.30 tolerated(0.41) benign(0) TCGA-AC-A23H-01 7 44240791 44240791 C G YKT6 Silent p.L19L 0.25 TCGA-AC-A23H-01 7 44286722 44286722 G C CAMK2B Silent p.L137L 0.18 TCGA-AC-A23H-01 7 44736517 44736517 G C OGDH Silent p.L635L 0.17 TCGA-AC-A23H-01 7 44841070 44841070 C G PPIA 3'UTR 0.21 TCGA-AC-A23H-01 7 45121728 45121728 C A NACAD Missense_Mutation p.D1351Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 7 45122392 45122392 C G NACAD Silent p.L1129L 0.39 TCGA-AC-A23H-01 7 45701769 45701769 G A ADCY1 Missense_Mutation p.E521K 0.22 tolerated(0.08) benign(0.019) TCGA-AC-A23H-01 7 47344432 47344432 C T TNS3 Silent p.E940E 0.13 TCGA-AC-A23H-01 7 47870889 47870889 C A PKD1L1 Missense_Mutation p.W2133C 0.31 tolerated(0.15) benign(0.001) TCGA-AC-A23H-01 7 4826023 4826023 C T AP5Z1 Silent p.L425L 0.18 TCGA-AC-A23H-01 7 48269511 48269511 C T ABCA13 Missense_Mutation p.S241L 0.25 possibly_damaging(0.862) TCGA-AC-A23H-01 7 48312929 48312929 C A ABCA13 Missense_Mutation p.F1222L 0.33 benign(0.012) TCGA-AC-A23H-01 7 48319347 48319347 C T ABCA13 Silent p.F2852F 0.16 TCGA-AC-A23H-01 7 48321036 48321036 C T ABCA13 Silent p.L2941L 0.29 TCGA-AC-A23H-01 7 50143987 50143987 G C C7orf72 Missense_Mutation p.D211H 0.29 tolerated(0.63) possibly_damaging(0.642) TCGA-AC-A23H-01 7 50513475 50513475 G A FIGNL1 Missense_Mutation p.S504F 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 7 5104375 5104375 C A RBAK Missense_Mutation p.Q430K 0.23 tolerated(0.24) possibly_damaging(0.654) TCGA-AC-A23H-01 7 5338737 5338737 G A SLC29A4 Missense_Mutation p.R334H 0.56 tolerated(0.09) possibly_damaging(0.729) TCGA-AC-A23H-01 7 5391556 5391556 C G TNRC18 Silent p.L1788L 0.29 TCGA-AC-A23H-01 7 5399126 5399126 G A TNRC18 Missense_Mutation p.S1579F 0.24 benign(0.308) TCGA-AC-A23H-01 7 55238412 55238412 C T EGFR Intron 0.21 TCGA-AC-A23H-01 7 55269464 55269464 G A EGFR Missense_Mutation p.D1051N 0.24 tolerated(0.6) benign(0.002) TCGA-AC-A23H-01 7 5568351 5568351 C A ACTB Splice_Site p.X122_splice 0.21 TCGA-AC-A23H-01 7 56006852 56006852 G C ZNF713 Missense_Mutation p.R149T 0.16 tolerated(0.31) benign(0.003) TCGA-AC-A23H-01 7 56147382 56147382 C G SUMF2 Missense_Mutation p.P299A 0.10 tolerated_low_confidence(0.13) benign(0) TCGA-AC-A23H-01 7 56171948 56171948 C T CHCHD2 Missense_Mutation p.E91K 0.47 deleterious(0.01) possibly_damaging(0.885) TCGA-AC-A23H-01 7 5965437 5965437 G A RSPH10B 3'Flank 0.19 TCGA-AC-A23H-01 7 6017294 6017294 C T PMS2 Silent p.L790L 0.19 TCGA-AC-A23H-01 7 63986678 63986678 G A ZNF680 Intron 0.23 TCGA-AC-A23H-01 7 64168261 64168261 G A ZNF107 Missense_Mutation p.E527K 0.11 tolerated(0.42) benign(0.053) TCGA-AC-A23H-01 7 64293075 64293075 G C ZNF138 3'Flank 0.21 TCGA-AC-A23H-01 7 6474605 6474605 C T DAGLB Missense_Mutation p.D156N 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-AC-A23H-01 7 64864193 64864193 G C ZNF92 Missense_Mutation p.R389T 0.19 tolerated(0.15) benign(0.101) TCGA-AC-A23H-01 7 6502626 6502626 C T KDELR2 3'UTR 0.28 TCGA-AC-A23H-01 7 65223224 65223224 G A SNORA22 3'Flank 0.22 TCGA-AC-A23H-01 7 65444483 65444483 G C GUSB Missense_Mutation p.F209L 0.51 deleterious(0.02) probably_damaging(0.962) TCGA-AC-A23H-01 7 65445244 65445244 C T GUSB Silent p.L121L 0.56 TCGA-AC-A23H-01 7 66274155 66274155 G A KCTD7 Missense_Mutation p.E454K 0.11 tolerated(0.11) benign(0.109) TCGA-AC-A23H-01 7 6639513 6639513 G A C7orf26 Missense_Mutation p.E212K 0.19 tolerated(0.2) possibly_damaging(0.486) TCGA-AC-A23H-01 7 6639567 6639567 C T C7orf26 Silent p.L230L 0.19 TCGA-AC-A23H-01 7 66460354 66460354 C G SBDS Silent p.V17V 0.25 TCGA-AC-A23H-01 7 6660905 6660905 G C ZNF853 Missense_Mutation p.E95Q 0.17 deleterious_low_confidence(0) unknown(0) TCGA-AC-A23H-01 7 66774032 66774032 C G STAG3L4 RNA 0.22 TCGA-AC-A23H-01 7 70229952 70229952 C G AUTS2 Missense_Mutation p.L477V 0.17 deleterious(0) possibly_damaging(0.848) TCGA-AC-A23H-01 7 72159806 72159806 G A MIR4650-2 5'Flank 0.42 TCGA-AC-A23H-01 7 72657790 72657790 G C GTF2IRD2P1 RNA 0.21 TCGA-AC-A23H-01 7 72665467 72665467 G A GTF2IRD2P1 RNA 0.12 TCGA-AC-A23H-01 7 72718967 72718967 G A NSUN5 Silent p.L210L 0.21 TCGA-AC-A23H-01 7 73101226 73101226 G C WBSCR22 Missense_Mutation p.M87I 0.21 deleterious(0) benign(0.345) TCGA-AC-A23H-01 7 73123384 73123384 G C STX1A Missense_Mutation p.F33L 0.14 deleterious(0.01) benign(0.291) TCGA-AC-A23H-01 7 74564025 74564025 C G GTF2IRD2B Missense_Mutation p.S591C 0.33 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 7 75167540 75167540 C G HIP1 Missense_Mutation p.E1023Q 0.19 tolerated(0.09) benign(0.258) TCGA-AC-A23H-01 7 75203145 75203145 G A HIP1 Silent p.L222L 0.16 TCGA-AC-A23H-01 7 75643111 75643111 G A STYXL1 Silent p.F134F 0.33 TCGA-AC-A23H-01 7 76054333 76054333 G A ZP3 Missense_Mutation p.E18K 0.35 tolerated(0.14) benign(0.025) TCGA-AC-A23H-01 7 7680095 7680095 G A RPA3 5'UTR 0.21 TCGA-AC-A23H-01 7 76825881 76825881 G A FGL2 Silent p.F345F 0.32 TCGA-AC-A23H-01 7 77558579 77558579 G C PHTF2 Missense_Mutation p.D391H 0.29 deleterious(0.02) possibly_damaging(0.885) TCGA-AC-A23H-01 7 77708290 77708290 C G MAGI2 Missense_Mutation p.R1227T 0.22 tolerated(0.1) probably_damaging(0.989) TCGA-AC-A23H-01 7 80300480 80300480 G A CD36 Missense_Mutation p.G336R 0.45 deleterious(0.04) benign(0.424) TCGA-AC-A23H-01 7 80439931 80439931 C T SEMA3C Missense_Mutation p.M178I 0.48 deleterious(0.01) possibly_damaging(0.773) TCGA-AC-A23H-01 7 81331828 81331828 C G HGF 3'UTR 0.10 TCGA-AC-A23H-01 7 82390020 82390020 C G PCLO Missense_Mutation p.D5075H 0.21 unknown(0) TCGA-AC-A23H-01 7 82580240 82580240 C G PCLO Missense_Mutation p.E3222Q 0.19 unknown(0) TCGA-AC-A23H-01 7 82586002 82586002 G C PCLO Missense_Mutation p.Q1423E 0.21 unknown(0) TCGA-AC-A23H-01 7 82784483 82784483 G C PCLO Missense_Mutation p.Q492E 0.16 benign(0.092) TCGA-AC-A23H-01 7 86848934 86848934 G C TMEM243 5'UTR 0.25 TCGA-AC-A23H-01 7 87179302 87179302 C T ABCB1 Silent p.V473V 0.16 TCGA-AC-A23H-01 7 88964626 88964626 C A ZNF804B Missense_Mutation p.S777Y 0.29 deleterious(0.02) benign(0.405) TCGA-AC-A23H-01 7 89793985 89793985 G C STEAP1 Missense_Mutation p.K319N 0.19 deleterious(0) benign(0.311) TCGA-AC-A23H-01 7 89856709 89856709 G A STEAP2 Missense_Mutation p.G306E 0.34 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 7 89897668 89897668 C G C7orf63 Missense_Mutation p.H168D 0.16 tolerated(0.44) benign(0.359) TCGA-AC-A23H-01 7 91691662 91691662 C T AKAP9 Missense_Mutation p.R1947C 0.25 probably_damaging(0.927) TCGA-AC-A23H-01 7 91737878 91737878 G A AKAP9 Missense_Mutation p.D3873N 0.25 probably_damaging(0.992) TCGA-AC-A23H-01 7 91793470 91793470 G C LRRD1 Silent p.L349L 0.29 TCGA-AC-A23H-01 7 91991574 91991574 G A ANKIB1 Missense_Mutation p.M491I 0.17 tolerated(0.28) benign(0.124) TCGA-AC-A23H-01 7 92735193 92735193 T A SAMD9 Missense_Mutation p.E73V 0.22 deleterious(0.01) possibly_damaging(0.763) TCGA-AC-A23H-01 7 92762413 92762413 C G SAMD9L Missense_Mutation p.E958Q 0.22 deleterious(0.01) benign(0.138) TCGA-AC-A23H-01 7 92763337 92763337 C G SAMD9L Missense_Mutation p.E650Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 7 92763635 92763635 G C SAMD9L Silent p.L550L 0.45 TCGA-AC-A23H-01 7 933450 933450 G T GET4 Nonsense_Mutation p.E274* 0.22 TCGA-AC-A23H-01 7 94047825 94047825 C G COL1A2 Silent p.L662L 0.23 TCGA-AC-A23H-01 7 94257670 94257670 G A SGCE Silent p.G78G 0.15 TCGA-AC-A23H-01 7 94917887 94917887 C T PPP1R9A Nonsense_Mutation p.Q1257* 0.33 TCGA-AC-A23H-01 7 94917889 94917889 G A PPP1R9A Silent p.Q1257Q 0.46 TCGA-AC-A23H-01 7 97482374 97482374 G T ASNS Missense_Mutation p.Q492K 0.15 tolerated(0.93) benign(0.022) TCGA-AC-A23H-01 7 97821193 97821193 G C LMTK2 Silent p.L472L 0.21 TCGA-AC-A23H-01 7 97822247 97822247 G A LMTK2 Missense_Mutation p.E824K 0.44 tolerated(0.68) benign(0.15) TCGA-AC-A23H-01 7 98565302 98565302 G T TRRAP Missense_Mutation p.W2491L 0.27 probably_damaging(0.994) TCGA-AC-A23H-01 7 98785950 98785950 G T KPNA7 Silent p.L291L 0.22 TCGA-AC-A23H-01 7 99013881 99013881 G C BUD31 Missense_Mutation p.R72T 0.16 deleterious(0.03) benign(0.367) TCGA-AC-A23H-01 7 99103676 99103676 G A ZKSCAN5 Missense_Mutation p.M3I 0.11 deleterious(0.05) probably_damaging(0.958) TCGA-AC-A23H-01 7 99129216 99129216 C G ZKSCAN5 Missense_Mutation p.Q622E 0.23 tolerated(0.13) probably_damaging(0.994) TCGA-AC-A23H-01 7 99170182 99170182 C G ZNF655 Missense_Mutation p.L186V 0.21 tolerated(0.47) possibly_damaging(0.567) TCGA-AC-A23H-01 7 99220183 99220183 C G ZSCAN25 Missense_Mutation p.L201V 0.26 tolerated(0.17) probably_damaging(0.978) TCGA-AC-A23H-01 7 99655492 99655492 C G ZSCAN21 Missense_Mutation p.Q191E 0.17 tolerated(0.78) benign(0.024) TCGA-AC-A23H-01 7 99690500 99690500 C G MCM7 3'UTR 0.14 TCGA-AC-A23H-01 7 99694950 99694950 G A MCM7 Missense_Mutation p.S392L 0.26 deleterious(0) possibly_damaging(0.783) TCGA-AC-A23H-01 7 99754158 99754158 C T C7orf43 Missense_Mutation p.R364H 0.33 tolerated(0.23) benign(0) TCGA-AC-A23H-01 8 100568847 100568847 C G VPS13B Missense_Mutation p.Q1664E 0.22 tolerated(0.11) possibly_damaging(0.585) TCGA-AC-A23H-01 8 100790966 100790966 G C VPS13B Missense_Mutation p.E2521Q 0.19 deleterious(0) benign(0.403) TCGA-AC-A23H-01 8 101084415 101084415 C G RGS22 Missense_Mutation p.R128T 0.13 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 8 101146033 101146033 G C FBXO43 Silent p.L708L 0.55 TCGA-AC-A23H-01 8 101196269 101196269 G C SPAG1 Missense_Mutation p.E192Q 0.56 tolerated(0.07) possibly_damaging(0.897) TCGA-AC-A23H-01 8 101542040 101542040 C T ANKRD46 Missense_Mutation p.D8N 0.57 tolerated_low_confidence(0.36) possibly_damaging(0.539) TCGA-AC-A23H-01 8 101932962 101932962 G C YWHAZ Missense_Mutation p.Q233E 0.15 tolerated_low_confidence(0.18) benign(0.07) TCGA-AC-A23H-01 8 103664029 103664029 G T KLF10 Silent p.I177I 0.22 TCGA-AC-A23H-01 8 104053071 104053071 G A ATP6V1C1 Missense_Mutation p.E3K 0.57 deleterious(0) probably_damaging(0.985) TCGA-AC-A23H-01 8 10755441 10755441 C T XKR6 3'UTR 0.50 TCGA-AC-A23H-01 8 107773410 107773410 C G ABRA Missense_Mutation p.G334A 0.20 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 8 108913393 108913393 C G RSPO2 Missense_Mutation p.E214D 0.17 tolerated(0.55) benign(0.001) TCGA-AC-A23H-01 8 109482299 109482299 G C EMC2 Missense_Mutation p.G153A 0.20 tolerated(0.46) benign(0.001) TCGA-AC-A23H-01 8 110255436 110255436 G T NUDCD1 Missense_Mutation p.F518L 0.16 deleterious(0.01) possibly_damaging(0.622) TCGA-AC-A23H-01 8 110293355 110293355 G A NUDCD1 Silent p.T290T 0.16 TCGA-AC-A23H-01 8 110413741 110413741 C G PKHD1L1 Missense_Mutation p.H433D 0.15 tolerated(0.16) benign(0.406) TCGA-AC-A23H-01 8 118811949 118811949 C A EXT1 3'UTR 0.07 TCGA-AC-A23H-01 8 120629455 120629455 C A ENPP2 Missense_Mutation p.M202I 0.17 deleterious(0.01) benign(0.12) TCGA-AC-A23H-01 8 120756621 120756621 G C TAF2 Missense_Mutation p.Q1041E 0.22 tolerated_low_confidence(0.28) benign(0.074) TCGA-AC-A23H-01 8 121209170 121209170 G C COL14A1 Missense_Mutation p.E193Q 0.23 tolerated(0.1) possibly_damaging(0.707) TCGA-AC-A23H-01 8 121219307 121219307 C G COL14A1 Missense_Mutation p.P389A 0.11 tolerated(0.16) probably_damaging(0.999) TCGA-AC-A23H-01 8 121344922 121344922 G C COL14A1 Missense_Mutation p.G1578A 0.13 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 8 123963898 123963898 G A ZHX2 Missense_Mutation p.E50K 0.18 tolerated(0.3) benign(0.046) TCGA-AC-A23H-01 8 123963911 123963911 C G ZHX2 Missense_Mutation p.S54C 0.32 tolerated(0.06) benign(0.376) TCGA-AC-A23H-01 8 123964308 123964308 C T ZHX2 Silent p.I186I 0.21 TCGA-AC-A23H-01 8 124054479 124054479 G C DERL1 5'UTR 0.78 TCGA-AC-A23H-01 8 124351572 124351572 G C ATAD2 Missense_Mutation p.P945A 0.13 deleterious(0.01) benign(0.334) TCGA-AC-A23H-01 8 124373837 124373837 C A ATAD2 Nonsense_Mutation p.E367* 0.15 TCGA-AC-A23H-01 8 124384047 124384047 C G ATAD2 Missense_Mutation p.L133F 0.58 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-AC-A23H-01 8 124799973 124799973 C G FAM91A1 Missense_Mutation p.L421V 0.14 tolerated(0.08) possibly_damaging(0.73) TCGA-AC-A23H-01 8 125498103 125498103 G C RNF139 Missense_Mutation p.L71F 0.62 deleterious(0.01) probably_damaging(0.956) TCGA-AC-A23H-01 8 125498340 125498340 C G RNF139 Missense_Mutation p.I150M 0.14 tolerated(0.08) benign(0.17) TCGA-AC-A23H-01 8 125570080 125570080 C T MTSS1 Missense_Mutation p.E358K 0.09 tolerated(0.46) benign(0.024) TCGA-AC-A23H-01 8 126052129 126052129 C T KIAA0196 Missense_Mutation p.M954I 0.14 tolerated(0.52) benign(0.078) TCGA-AC-A23H-01 8 126194393 126194393 G C NSMCE2 Missense_Mutation p.E105Q 0.16 tolerated(0.49) benign(0.007) TCGA-AC-A23H-01 8 126448609 126448609 G A TRIB1 Missense_Mutation p.E339K 0.13 tolerated(0.45) benign(0.001) TCGA-AC-A23H-01 8 126448742 126448742 C G TRIB1 3'UTR 0.82 TCGA-AC-A23H-01 8 130765006 130765006 G C GSDMC Nonsense_Mutation p.S261* 0.18 TCGA-AC-A23H-01 8 131124376 131124376 C T ASAP1 Missense_Mutation p.E789K 0.14 tolerated(0.42) benign(0.016) TCGA-AC-A23H-01 8 131199523 131199523 C G ASAP1 Missense_Mutation p.K163N 0.16 deleterious(0) probably_damaging(0.95) TCGA-AC-A23H-01 8 134030207 134030207 G A TG Silent p.L2249L 0.24 TCGA-AC-A23H-01 8 134042144 134042144 G T TG Missense_Mutation p.G2372V 0.31 tolerated(0.53) benign(0) TCGA-AC-A23H-01 8 134063064 134063064 G C SLA Missense_Mutation p.S93C 0.09 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 8 134232821 134232821 C T WISP1 Intron 0.18 TCGA-AC-A23H-01 8 135669821 135669821 G A ZFAT Missense_Mutation p.S60L 0.09 tolerated(0.3) benign(0.016) TCGA-AC-A23H-01 8 140631134 140631134 G C KCNK9 Missense_Mutation p.F164L 0.60 tolerated(0.57) benign(0.004) TCGA-AC-A23H-01 8 140898132 140898132 G A TRAPPC9 Silent p.L1114L 0.34 TCGA-AC-A23H-01 8 141285767 141285767 G A TRAPPC9 Silent p.L854L 0.10 TCGA-AC-A23H-01 8 141684440 141684440 G A PTK2 Missense_Mutation p.A899V 0.11 tolerated(0.07) benign(0.272) TCGA-AC-A23H-01 8 142204198 142204198 G A DENND3 Missense_Mutation p.E1155K 0.09 deleterious(0.02) possibly_damaging(0.625) TCGA-AC-A23H-01 8 142238315 142238315 C T SLC45A4 Silent p.V17V 0.15 TCGA-AC-A23H-01 8 142505477 142505477 C A MROH5 Silent p.V88V 0.19 TCGA-AC-A23H-01 8 143603395 143603395 G A BAI1 Missense_Mutation p.E1032K 0.69 deleterious(0) benign(0) TCGA-AC-A23H-01 8 143956647 143956647 C T CYP11B1 Intron 0.14 TCGA-AC-A23H-01 8 144351663 144351663 C G GLI4 Missense_Mutation p.Q33E 0.71 tolerated(0.23) benign(0.011) TCGA-AC-A23H-01 8 144733536 144733536 A C ZNF623 Silent p.S498S 0.12 TCGA-AC-A23H-01 8 144890907 144890907 C G SCRIB Missense_Mutation p.E663Q 0.38 benign(0.12) TCGA-AC-A23H-01 8 144892910 144892910 G A SCRIB Silent p.F450F 0.18 TCGA-AC-A23H-01 8 144895654 144895654 G C SCRIB Silent p.L163L 0.17 TCGA-AC-A23H-01 8 144920861 144920861 G C NRBP2 Silent p.P277P 0.09 TCGA-AC-A23H-01 8 145005745 145005745 G C PLEC Missense_Mutation p.S891C 0.69 unknown(0) TCGA-AC-A23H-01 8 145151520 145151520 C T CYC1 Silent p.L215L 0.19 TCGA-AC-A23H-01 8 145245805 145245805 C G MROH1 Silent p.L227L 0.14 TCGA-AC-A23H-01 8 145540192 145540192 G C DGAT1 3'UTR 0.11 TCGA-AC-A23H-01 8 145540701 145540701 G A DGAT1 Missense_Mutation p.S411L 0.18 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 8 145621872 145621872 C T CPSF1 Missense_Mutation p.G923R 0.59 tolerated(0.38) benign(0.004) TCGA-AC-A23H-01 8 145735845 145735845 C T MFSD3 Missense_Mutation p.S262F 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 8 145763108 145763108 C T ARHGAP39 Missense_Mutation p.D871N 0.56 tolerated(0.09) benign(0.075) TCGA-AC-A23H-01 8 145763136 145763136 C G ARHGAP39 Missense_Mutation p.K861N 0.12 deleterious(0.03) benign(0.026) TCGA-AC-A23H-01 8 146054860 146054860 C G ZNF7 Intron 0.60 TCGA-AC-A23H-01 8 146067152 146067152 G C ZNF7 Missense_Mutation p.Q220H 0.70 deleterious(0) benign(0.006) TCGA-AC-A23H-01 8 146107011 146107011 C G ZNF250 Missense_Mutation p.Q524H 0.67 tolerated(0.16) probably_damaging(0.995) TCGA-AC-A23H-01 8 18413859 18413859 C G PSD3 Missense_Mutation p.E930Q 0.46 deleterious(0.01) probably_damaging(0.968) TCGA-AC-A23H-01 8 18729344 18729344 G C PSD3 Missense_Mutation p.L344V 0.15 tolerated_low_confidence(0.38) benign(0.02) TCGA-AC-A23H-01 8 21965469 21965469 G T NUDT18 Intron 0.38 TCGA-AC-A23H-01 8 22141726 22141726 G A PIWIL2 Silent p.L228L 0.70 TCGA-AC-A23H-01 8 26435623 26435623 C G DPYSL2 5'UTR 0.50 TCGA-AC-A23H-01 8 27289864 27289864 G C PTK2B Missense_Mutation p.E325Q 0.23 tolerated(0.24) possibly_damaging(0.675) TCGA-AC-A23H-01 8 27399056 27399056 G A EPHX2 Silent p.R482R 0.47 TCGA-AC-A23H-01 8 27514305 27514305 G A SCARA3 Missense_Mutation p.R78K 0.16 tolerated(0.45) benign(0.016) TCGA-AC-A23H-01 8 27593697 27593697 C A CCDC25 3'UTR 0.21 TCGA-AC-A23H-01 8 27887888 27887888 C G NUGGC Missense_Mutation p.K652N 0.55 deleterious(0) possibly_damaging(0.807) TCGA-AC-A23H-01 8 28821327 28821327 G C HMBOX1 Splice_Site 0.46 TCGA-AC-A23H-01 8 29025023 29025023 G C KIF13B Nonsense_Mutation p.S342* 0.49 TCGA-AC-A23H-01 8 30002006 30002006 G C MBOAT4 Missense_Mutation p.R38G 0.64 tolerated(0.57) benign(0.039) TCGA-AC-A23H-01 8 30701561 30701561 G A TEX15 Missense_Mutation p.S1658L 0.57 deleterious(0) possibly_damaging(0.808) TCGA-AC-A23H-01 8 30889438 30889438 C T PURG Silent p.L287L 0.42 TCGA-AC-A23H-01 8 30889906 30889906 C T PURG Silent p.L131L 0.50 TCGA-AC-A23H-01 8 30933780 30933780 C T WRN Silent p.F272F 0.46 TCGA-AC-A23H-01 8 38173007 38173007 G A WHSC1L1 Missense_Mutation p.S681F 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A23H-01 8 38187315 38187315 C G WHSC1L1 Missense_Mutation p.E388Q 0.50 tolerated(0.19) probably_damaging(0.917) TCGA-AC-A23H-01 8 38187372 38187372 C G WHSC1L1 Missense_Mutation p.D369H 0.42 deleterious(0) probably_damaging(0.928) TCGA-AC-A23H-01 8 38840029 38840029 C T HTRA4 Missense_Mutation p.S376L 0.45 tolerated(0.42) benign(0.006) TCGA-AC-A23H-01 8 41122839 41122839 G A SFRP1 Silent p.L264L 0.43 TCGA-AC-A23H-01 8 41834588 41834588 G C KAT6A Missense_Mutation p.S434C 0.41 probably_damaging(0.981) TCGA-AC-A23H-01 8 42038190 42038190 C G PLAT Silent p.L301L 0.33 TCGA-AC-A23H-01 8 42183569 42183569 C G IKBKB Missense_Mutation p.Q690E 0.41 tolerated(0.46) benign(0.428) TCGA-AC-A23H-01 8 42227455 42227455 G A POLB Missense_Mutation p.E288K 0.33 tolerated(0.12) benign(0.005) TCGA-AC-A23H-01 8 42231715 42231715 C T DKK4 Missense_Mutation p.R193H 0.44 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 8 43033374 43033374 C A HGSNAT Missense_Mutation p.P337T 0.34 deleterious(0.01) benign(0.324) TCGA-AC-A23H-01 8 48648122 48648122 G C SPIDR 3'UTR 0.58 TCGA-AC-A23H-01 8 48771175 48771175 G A PRKDC Missense_Mutation p.P2122S 0.12 probably_damaging(0.995) TCGA-AC-A23H-01 8 48792181 48792181 G A PRKDC Silent p.L1701L 0.15 TCGA-AC-A23H-01 8 48811100 48811100 C T PRKDC Missense_Mutation p.D1132N 0.34 benign(0.059) TCGA-AC-A23H-01 8 49647713 49647713 C G EFCAB1 5'UTR 0.23 TCGA-AC-A23H-01 8 51415335 51415335 C G SNTG1 Intron 0.13 TCGA-AC-A23H-01 8 52284470 52284470 C A PXDNL Silent p.P1288P 0.63 TCGA-AC-A23H-01 8 52721988 52721988 G A PXDNL 5'UTR 0.77 TCGA-AC-A23H-01 8 52773746 52773746 G C PCMTD1 5'UTR 0.15 TCGA-AC-A23H-01 8 53030921 53030921 C G ST18 Missense_Mutation p.D946H 0.58 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 8 53030994 53030994 C G ST18 Missense_Mutation p.E921D 0.14 tolerated(0.21) benign(0.077) TCGA-AC-A23H-01 8 53085093 53085093 C G ST18 Missense_Mutation p.E110Q 0.12 tolerated(0.07) benign(0.273) TCGA-AC-A23H-01 8 54906232 54906232 C G TCEA1 Missense_Mutation p.E106Q 0.18 tolerated(0.24) benign(0.011) TCGA-AC-A23H-01 8 55013491 55013491 G A LYPLA1 Silent p.F26F 0.60 TCGA-AC-A23H-01 8 55538337 55538337 C T RP1 Missense_Mutation p.S632L 0.21 tolerated(0.2) benign(0.037) TCGA-AC-A23H-01 8 56686088 56686088 G T TGS1 5'UTR 0.30 TCGA-AC-A23H-01 8 56698332 56698332 C T TGS1 Missense_Mutation p.S74L 0.20 tolerated(0.31) benign(0.017) TCGA-AC-A23H-01 8 56699571 56699571 G A TGS1 Missense_Mutation p.E372K 0.22 tolerated(1) benign(0) TCGA-AC-A23H-01 8 56854475 56854475 G C LYN Missense_Mutation p.L19F 0.18 tolerated(0.72) benign(0.089) TCGA-AC-A23H-01 8 57228644 57228644 C T SDR16C5 Missense_Mutation p.G88E 0.63 deleterious(0.01) probably_damaging(1) TCGA-AC-A23H-01 8 59343144 59343144 G A UBXN2B Silent p.V85V 0.23 TCGA-AC-A23H-01 8 59358548 59358548 G A UBXN2B Missense_Mutation p.D252N 0.12 deleterious(0.02) benign(0.094) TCGA-AC-A23H-01 8 61765813 61765813 G A CHD7 Missense_Mutation p.E2177K 0.11 benign(0.002) TCGA-AC-A23H-01 8 62538648 62538648 T A ASPH Intron 0.22 TCGA-AC-A23H-01 8 63973898 63973898 G C TTPA Missense_Mutation p.F250L 0.24 tolerated(0.65) benign(0.002) TCGA-AC-A23H-01 8 64099494 64099494 C T YTHDF3 Nonsense_Mutation p.Q308* 0.14 TCGA-AC-A23H-01 8 64122442 64122442 C T YTHDF3 3'UTR 0.30 TCGA-AC-A23H-01 8 65494151 65494151 G A BHLHE22 Silent p.V268V 0.45 TCGA-AC-A23H-01 8 67039518 67039518 G A TRIM55 Silent p.L5L 0.17 TCGA-AC-A23H-01 8 67405739 67405739 G C C8orf46 5'UTR 0.15 TCGA-AC-A23H-01 8 67926767 67926767 G C PPP1R42 Missense_Mutation p.Q64E 0.11 tolerated(0.23) benign(0.001) TCGA-AC-A23H-01 8 68007537 68007537 C A CSPP1 Missense_Mutation p.Q174K 0.58 tolerated(0.21) benign(0.209) TCGA-AC-A23H-01 8 68026075 68026075 G C CSPP1 Missense_Mutation p.G417A 0.21 deleterious(0.01) possibly_damaging(0.839) TCGA-AC-A23H-01 8 68049834 68049834 G C CSPP1 Silent p.L652L 0.20 TCGA-AC-A23H-01 8 68062015 68062015 C T CSPP1 Intron 0.23 TCGA-AC-A23H-01 8 68150640 68150640 C G ARFGEF1 Missense_Mutation p.R1076T 0.23 tolerated(0.22) benign(0.066) TCGA-AC-A23H-01 8 68255431 68255431 G C ARFGEF1 Missense_Mutation p.S31C 0.11 deleterious(0.02) possibly_damaging(0.827) TCGA-AC-A23H-01 8 69104691 69104691 C T PREX2 Missense_Mutation p.S1512L 0.35 tolerated(0.3) benign(0.058) TCGA-AC-A23H-01 8 70533349 70533349 G A SULF1 Missense_Mutation p.R486Q 0.56 tolerated(0.14) benign(0.015) TCGA-AC-A23H-01 8 71039235 71039235 C T NCOA2 Silent p.L1243L 0.55 TCGA-AC-A23H-01 8 71053514 71053514 C T NCOA2 Missense_Mutation p.G978E 0.18 tolerated(0.11) benign(0.33) TCGA-AC-A23H-01 8 71060584 71060584 G T NCOA2 Silent p.L843L 0.15 TCGA-AC-A23H-01 8 71495481 71495481 C T TRAM1 Nonsense_Mutation p.W323* 0.56 TCGA-AC-A23H-01 8 71510247 71510247 C T TRAM1 Splice_Site p.X104_splice 0.19 TCGA-AC-A23H-01 8 72958768 72958768 C T TRPA1 Missense_Mutation p.E681K 0.20 tolerated(0.26) possibly_damaging(0.697) TCGA-AC-A23H-01 8 72965034 72965034 G T RP11-383H13.1 3'UTR 0.20 TCGA-AC-A23H-01 8 73979689 73979689 G C SBSPON Missense_Mutation p.Q228E 0.23 tolerated(0.06) benign(0.017) TCGA-AC-A23H-01 8 77765158 77765158 G A ZFHX4 Missense_Mutation p.E2001K 0.18 possibly_damaging(0.486) TCGA-AC-A23H-01 8 77767177 77767177 C G ZFHX4 Missense_Mutation p.H2674D 0.19 probably_damaging(0.964) TCGA-AC-A23H-01 8 79510626 79510626 G A PKIA Missense_Mutation p.D3N 0.19 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 8 80677501 80677501 C T HEY1 Silent p.L283L 0.17 TCGA-AC-A23H-01 8 80678721 80678721 C T HEY1 Intron 0.52 TCGA-AC-A23H-01 8 80950258 80950258 C T TPD52 3'UTR 0.28 TCGA-AC-A23H-01 8 80950264 80950264 G A TPD52 3'UTR 0.26 TCGA-AC-A23H-01 8 8175823 8175823 C T SGK223 Silent p.K1354K 0.30 TCGA-AC-A23H-01 8 82598035 82598035 C G IMPA1 Missense_Mutation p.G39A 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.899) TCGA-AC-A23H-01 8 82627114 82627114 C G ZFAND1 Missense_Mutation p.D95H 0.21 deleterious(0) probably_damaging(0.993) TCGA-AC-A23H-01 8 86027664 86027664 G T LRRCC1 Nonsense_Mutation p.E259* 0.27 TCGA-AC-A23H-01 8 86050409 86050409 G T LRRCC1 Missense_Mutation p.R878I 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 8 86193651 86193651 C G CA13 3'UTR 0.24 TCGA-AC-A23H-01 8 87443920 87443920 C T WWP1 Missense_Mutation p.H517Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 8 87679184 87679184 C G CNGB3 Missense_Mutation p.R274T 0.15 deleterious(0) probably_damaging(0.996) TCGA-AC-A23H-01 8 8877911 8877911 C G ERI1 Silent p.L248L 0.47 TCGA-AC-A23H-01 8 90937001 90937001 C G OSGIN2 Silent p.L297L 0.25 TCGA-AC-A23H-01 8 91029411 91029411 C G DECR1 Missense_Mutation p.F43L 0.56 deleterious(0.04) benign(0.026) TCGA-AC-A23H-01 8 93017505 93017505 C G RUNX1T1 Missense_Mutation p.Q204H 0.58 deleterious(0.02) probably_damaging(0.991) TCGA-AC-A23H-01 8 94740633 94740633 G C FAM92A1 3'UTR 0.25 TCGA-AC-A23H-01 8 94792877 94792877 G A TMEM67 Missense_Mutation p.M257I 0.18 deleterious(0.03) possibly_damaging(0.783) TCGA-AC-A23H-01 8 94822068 94822068 T A TMEM67 Missense_Mutation p.L906H 0.19 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 8 95411834 95411834 C A RAD54B Nonsense_Mutation p.E396* 0.13 TCGA-AC-A23H-01 8 95419762 95419762 G C RAD54B Missense_Mutation p.S229C 0.58 tolerated(0.21) benign(0.002) TCGA-AC-A23H-01 8 95500828 95500828 C G KIAA1429 3'UTR 0.22 TCGA-AC-A23H-01 8 95504988 95504988 G C KIAA1429 Nonsense_Mutation p.S1567* 0.57 TCGA-AC-A23H-01 8 95518894 95518894 C G KIAA1429 Missense_Mutation p.E1311Q 0.14 deleterious(0.01) benign(0.411) TCGA-AC-A23H-01 8 95522665 95522665 C A KIAA1429 Missense_Mutation p.L1202F 0.18 tolerated(0.06) probably_damaging(0.975) TCGA-AC-A23H-01 8 95676955 95676955 C T ESRP1 Silent p.T225T 0.20 TCGA-AC-A23H-01 9 100132233 100132233 G A CCDC180 Missense_Mutation p.E1451K 0.46 tolerated(0.06) possibly_damaging(0.486) TCGA-AC-A23H-01 9 100388039 100388039 C G TSTD2 Missense_Mutation p.E136Q 0.22 tolerated(0.26) benign(0.148) TCGA-AC-A23H-01 9 100424412 100424412 C T NCBP1 Silent p.F563F 0.19 TCGA-AC-A23H-01 9 100849597 100849597 C G TRIM14 3'UTR 0.19 TCGA-AC-A23H-01 9 101832093 101832093 G A COL15A1 Silent p.Q1364Q 0.14 TCGA-AC-A23H-01 9 101908834 101908834 G T TGFBR1 Missense_Mutation p.D400Y 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 9 102590586 102590586 G T NR4A3 Nonsense_Mutation p.E99* 0.22 TCGA-AC-A23H-01 9 102861228 102861228 G T ERP44 5'UTR 0.09 TCGA-AC-A23H-01 9 103059203 103059203 C T INVS Nonsense_Mutation p.Q931* 0.18 TCGA-AC-A23H-01 9 103091439 103091439 C A TEX10 Silent p.L536L 0.23 TCGA-AC-A23H-01 9 104130414 104130414 C G BAAT Silent p.L219L 0.50 TCGA-AC-A23H-01 9 104130452 104130452 C T BAAT Missense_Mutation p.D207N 0.18 tolerated(0.11) possibly_damaging(0.831) TCGA-AC-A23H-01 9 104170579 104170579 C T ZNF189 Nonsense_Mutation p.Q177* 0.18 TCGA-AC-A23H-01 9 1057000 1057000 C A DMRT2 Missense_Mutation p.F471L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-AC-A23H-01 9 106887204 106887204 G C SMC2 Missense_Mutation p.E757Q 0.14 tolerated(0.29) benign(0.06) TCGA-AC-A23H-01 9 107367193 107367193 G C OR13C2 Missense_Mutation p.S239C 0.35 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 9 107367664 107367664 A C OR13C2 Missense_Mutation p.L82R 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 9 107367696 107367696 G C OR13C2 Missense_Mutation p.I71M 0.21 deleterious(0) probably_damaging(0.997) TCGA-AC-A23H-01 9 107380461 107380461 G T OR13C9 Missense_Mutation p.L9M 0.23 tolerated(0.08) benign(0.062) TCGA-AC-A23H-01 9 107456838 107456838 C T OR13D1 Silent p.L46L 0.22 TCGA-AC-A23H-01 9 107457492 107457492 G A OR13D1 Missense_Mutation p.E264K 0.19 deleterious(0.02) benign(0.17) TCGA-AC-A23H-01 9 108127854 108127854 C T SLC44A1 Silent p.F448F 0.19 TCGA-AC-A23H-01 9 108127911 108127911 C G SLC44A1 Silent p.L467L 0.20 TCGA-AC-A23H-01 9 108246676 108246676 C T FSD1L Missense_Mutation p.S160L 0.17 deleterious(0) benign(0.231) TCGA-AC-A23H-01 9 108270913 108270913 C G FSD1L Nonsense_Mutation p.S271* 0.16 TCGA-AC-A23H-01 9 109688481 109688481 G C ZNF462 Missense_Mutation p.R763T 0.41 benign(0.197) TCGA-AC-A23H-01 9 109690550 109690550 G T ZNF462 Nonsense_Mutation p.E1453* 0.34 TCGA-AC-A23H-01 9 109736552 109736552 G A ZNF462 Missense_Mutation p.R2277Q 0.16 probably_damaging(0.99) TCGA-AC-A23H-01 9 110086203 110086203 C G RAD23B Missense_Mutation p.Q284E 0.21 deleterious(0) possibly_damaging(0.874) TCGA-AC-A23H-01 9 110086287 110086287 C G RAD23B Missense_Mutation p.Q312E 0.19 tolerated(0.4) benign(0.241) TCGA-AC-A23H-01 9 110091887 110091887 G A RAD23B Missense_Mutation p.E394K 0.26 deleterious(0.02) probably_damaging(0.951) TCGA-AC-A23H-01 9 111618099 111618099 G C ACTL7B Missense_Mutation p.Q38E 0.16 tolerated(1) benign(0.001) TCGA-AC-A23H-01 9 111640963 111640963 C G IKBKAP Missense_Mutation p.E1214Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 9 111979286 111979286 G A EPB41L4B Missense_Mutation p.H517Y 0.22 tolerated(0.39) benign(0.332) TCGA-AC-A23H-01 9 112899055 112899055 G C PALM2-AKAP2 Missense_Mutation p.E411Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 9 112924410 112924410 G A PALM2-AKAP2 Missense_Mutation p.E1071K 0.34 tolerated(0.08) probably_damaging(0.994) TCGA-AC-A23H-01 9 113220813 113220813 C T SVEP1 Missense_Mutation p.E1172K 0.09 probably_damaging(0.968) TCGA-AC-A23H-01 9 114089923 114089923 G C OR2K2 Nonsense_Mutation p.S264* 0.18 TCGA-AC-A23H-01 9 114296571 114296571 C T ZNF483 Missense_Mutation p.S220F 0.25 tolerated(0.08) possibly_damaging(0.485) TCGA-AC-A23H-01 9 114304256 114304256 G A ZNF483 Silent p.L347L 0.25 TCGA-AC-A23H-01 9 114454056 114454056 G C C9orf84 Missense_Mutation p.L1337V 0.42 tolerated(0.2) benign(0.116) TCGA-AC-A23H-01 9 114470194 114470194 C A C9orf84 Silent p.L769L 0.39 TCGA-AC-A23H-01 9 114691927 114691927 G C UGCG Missense_Mutation p.D236H 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 9 115407974 115407974 G A KIAA1958 Missense_Mutation p.D406N 0.20 tolerated(0.52) benign(0.05) TCGA-AC-A23H-01 9 115407975 115407975 A T KIAA1958 Missense_Mutation p.D406V 0.20 deleterious(0.03) benign(0.142) TCGA-AC-A23H-01 9 116135771 116135771 G C HDHD3 3'UTR 0.25 TCGA-AC-A23H-01 9 116191543 116191543 G A C9orf43 Silent p.K421K 0.20 TCGA-AC-A23H-01 9 116840487 116840487 C G AMBP Translation_Start_Site p.M1? 0.15 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 9 116972001 116972001 G C COL27A1 Missense_Mutation p.G772A 0.16 unknown(0) TCGA-AC-A23H-01 9 117113142 117113142 C T AKNA Missense_Mutation p.R1073Q 0.22 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 9 119033603 119033603 G T PAPPA Splice_Site p.X954_splice 0.23 TCGA-AC-A23H-01 9 119462072 119462072 C G TRIM32 3'UTR 0.23 TCGA-AC-A23H-01 9 119976778 119976778 C T ASTN2 Missense_Mutation p.D292N 0.21 tolerated_low_confidence(0.17) unknown(0) TCGA-AC-A23H-01 9 123232427 123232427 G A CDK5RAP2 Nonsense_Mutation p.Q644* 0.20 TCGA-AC-A23H-01 9 123527011 123527011 C G FBXW2 Silent p.L397L 0.18 TCGA-AC-A23H-01 9 123858707 123858707 G A CNTRL Missense_Mutation p.E163K 0.14 probably_damaging(1) TCGA-AC-A23H-01 9 123877413 123877413 G A CNTRL Missense_Mutation p.E464K 0.17 probably_damaging(0.999) TCGA-AC-A23H-01 9 123886239 123886239 G C CNTRL Missense_Mutation p.E561Q 0.42 probably_damaging(0.999) TCGA-AC-A23H-01 9 124584998 124584998 C T TTLL11 Silent p.P757P 0.25 TCGA-AC-A23H-01 9 125154622 125154622 C G PTGS1 Silent p.L533L 0.35 TCGA-AC-A23H-01 9 125154632 125154632 C G PTGS1 Missense_Mutation p.P537A 0.34 deleterious(0.05) benign(0.189) TCGA-AC-A23H-01 9 125239396 125239396 C G OR1J1 Missense_Mutation p.K270N 0.23 tolerated_low_confidence(0.07) benign(0.003) TCGA-AC-A23H-01 9 125674315 125674315 C G ZBTB6 Missense_Mutation p.E13Q 0.44 tolerated(0.42) possibly_damaging(0.782) TCGA-AC-A23H-01 9 125748604 125748604 G A RABGAP1 Missense_Mutation p.E166K 0.34 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 9 125898322 125898322 G A STRBP Nonsense_Mutation p.Q591* 0.36 TCGA-AC-A23H-01 9 126214573 126214573 C T DENND1A Missense_Mutation p.M427I 0.38 deleterious(0.02) possibly_damaging(0.867) TCGA-AC-A23H-01 9 126220168 126220168 C T DENND1A Silent p.P334P 0.24 TCGA-AC-A23H-01 9 127083810 127083810 G C NEK6 Missense_Mutation p.E157Q 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A23H-01 9 127220401 127220401 G C GPR144 Missense_Mutation p.G524A 0.20 tolerated(0.5) benign(0.368) TCGA-AC-A23H-01 9 127570089 127570089 C A OLFML2A Silent p.R400R 0.34 TCGA-AC-A23H-01 9 127572155 127572155 G A OLFML2A Missense_Mutation p.A475T 0.11 deleterious(0) possibly_damaging(0.798) TCGA-AC-A23H-01 9 127572254 127572254 G A OLFML2A Missense_Mutation p.E508K 0.46 deleterious(0.01) possibly_damaging(0.621) TCGA-AC-A23H-01 9 127572765 127572765 C G OLFML2A 3'UTR 0.42 TCGA-AC-A23H-01 9 127781102 127781102 G C SCAI Silent p.L302L 0.18 TCGA-AC-A23H-01 9 129595032 129595032 G C ZBTB43 Missense_Mutation p.E82Q 0.39 deleterious(0.01) possibly_damaging(0.808) TCGA-AC-A23H-01 9 129974506 129974506 G A RALGPS1 Silent p.R448R 0.30 TCGA-AC-A23H-01 9 130206315 130206315 G A ZNF79 Silent p.K112K 0.15 TCGA-AC-A23H-01 9 130206421 130206421 G C ZNF79 Missense_Mutation p.E148Q 0.32 tolerated(0.52) benign(0.013) TCGA-AC-A23H-01 9 130477846 130477846 G A PTRH1 Missense_Mutation p.R25C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.634) TCGA-AC-A23H-01 9 130478496 130478496 G T PTRH1 5'UTR 0.36 TCGA-AC-A23H-01 9 130482576 130482576 C G TTC16 Missense_Mutation p.Q187E 0.13 tolerated(0.3) benign(0.002) TCGA-AC-A23H-01 9 130501096 130501096 C A SH2D3C Nonsense_Mutation p.E838* 0.13 TCGA-AC-A23H-01 9 130648825 130648825 G A ST6GALNAC6 3'UTR 0.18 TCGA-AC-A23H-01 9 130742461 130742461 G A FAM102A 5'UTR 0.15 TCGA-AC-A23H-01 9 131038595 131038595 G C SWI5 Silent p.L57L 0.46 TCGA-AC-A23H-01 9 131185059 131185059 C G CERCAM Intron 0.24 TCGA-AC-A23H-01 9 131198082 131198082 C A CERCAM Silent p.L562L 0.46 TCGA-AC-A23H-01 9 131346738 131346738 C T SPTAN1 Missense_Mutation p.R791W 0.19 deleterious(0) possibly_damaging(0.761) TCGA-AC-A23H-01 9 131371503 131371503 G C SPTAN1 Missense_Mutation p.W1566C 0.13 deleterious(0) unknown(0) TCGA-AC-A23H-01 9 131469042 131469042 G A PKN3 Silent p.L154L 0.25 TCGA-AC-A23H-01 9 131484719 131484719 G A ZDHHC12 Nonsense_Mutation p.Q79* 0.19 TCGA-AC-A23H-01 9 131486279 131486279 C G ZDHHC12 Missense_Mutation p.D32H 0.29 deleterious(0.01) benign(0.443) TCGA-AC-A23H-01 9 131588880 131588880 C G C9orf114 Missense_Mutation p.G133R 0.19 tolerated(0.07) benign(0.316) TCGA-AC-A23H-01 9 131597799 131597799 G C CCBL1 Missense_Mutation p.Q335E 0.21 tolerated(1) benign(0.007) TCGA-AC-A23H-01 9 131743579 131743579 G A NUP188 Missense_Mutation p.E476K 0.12 deleterious(0.01) possibly_damaging(0.755) TCGA-AC-A23H-01 9 131857735 131857735 C T CRAT Missense_Mutation p.E608K 0.14 tolerated(0.26) benign(0.086) TCGA-AC-A23H-01 9 132084556 132084556 C T C9orf106 RNA 0.22 TCGA-AC-A23H-01 9 13222433 13222433 C G MPDZ Missense_Mutation p.L182F 0.49 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 9 132375826 132375826 C G C9orf50 Missense_Mutation p.E311Q 0.19 deleterious(0.02) possibly_damaging(0.775) TCGA-AC-A23H-01 9 132584995 132584995 C T TOR1A Nonsense_Mutation p.W103* 0.17 TCGA-AC-A23H-01 9 132891015 132891015 G C GPR107 Missense_Mutation p.E561Q 0.14 deleterious(0) possibly_damaging(0.544) TCGA-AC-A23H-01 9 133748407 133748408 - A ABL1 Frame_Shift_Ins p.N377Kfs*24 0.11 TCGA-AC-A23H-01 9 133759439 133759439 G C ABL1 Missense_Mutation p.E607Q 0.23 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-AC-A23H-01 9 133945171 133945171 C G LAMC3 Missense_Mutation p.F1001L 0.12 deleterious(0.01) possibly_damaging(0.706) TCGA-AC-A23H-01 9 134001029 134001029 G A NUP214 5'UTR 0.32 TCGA-AC-A23H-01 9 134053765 134053765 G C NUP214 Missense_Mutation p.K1129N 0.39 possibly_damaging(0.503) TCGA-AC-A23H-01 9 134072842 134072842 C A NUP214 Missense_Mutation p.L1321M 0.21 probably_damaging(0.979) TCGA-AC-A23H-01 9 134349858 134349858 C T PRRC2B Missense_Mutation p.S781F 0.19 deleterious(0.01) possibly_damaging(0.602) TCGA-AC-A23H-01 9 134358247 134358247 G A PRRC2B Missense_Mutation p.D1776N 0.33 deleterious(0.02) possibly_damaging(0.834) TCGA-AC-A23H-01 9 135139998 135139998 G A SETX Silent p.F2554F 0.22 TCGA-AC-A23H-01 9 135276951 135276951 C G TTF1 Missense_Mutation p.D420H 0.09 deleterious(0.04) benign(0.199) TCGA-AC-A23H-01 9 135487494 135487494 C G DDX31 Missense_Mutation p.K763N 0.40 deleterious(0.03) benign(0.412) TCGA-AC-A23H-01 9 135564350 135564350 G C GTF3C4 3'UTR 0.24 TCGA-AC-A23H-01 9 135787836 135787836 C G TSC1 Missense_Mutation p.R249T 0.42 tolerated(0.07) benign(0.012) TCGA-AC-A23H-01 9 136081768 136081768 C T OBP2B Missense_Mutation p.E142K 0.14 deleterious(0) probably_damaging(0.912) TCGA-AC-A23H-01 9 136218792 136218792 G C SURF1 Missense_Mutation p.F293L 0.10 deleterious(0.01) benign(0.378) TCGA-AC-A23H-01 9 136226967 136226967 G T SURF2 Missense_Mutation p.G160V 0.20 benign(0.257) TCGA-AC-A23H-01 9 136555504 136555504 G T SARDH Silent p.A689A 0.24 TCGA-AC-A23H-01 9 136654418 136654418 C T VAV2 Silent p.L412L 0.39 TCGA-AC-A23H-01 9 136905274 136905274 C G BRD3 Missense_Mutation p.E509Q 0.44 tolerated(0.16) benign(0.102) TCGA-AC-A23H-01 9 137688259 137688259 G A COL5A1 Missense_Mutation p.E947K 0.23 unknown(0) TCGA-AC-A23H-01 9 137809612 137809612 C T FCN1 Intron 0.17 TCGA-AC-A23H-01 9 138395685 138395685 C G MRPS2 Silent p.L199L 0.16 TCGA-AC-A23H-01 9 138438623 138438623 G A OBP2A Splice_Site p.X25_splice 0.38 TCGA-AC-A23H-01 9 138645813 138645813 C T KCNT1 Silent p.F155F 0.23 TCGA-AC-A23H-01 9 138683935 138683935 G C KCNT1 Missense_Mutation p.Q1212H 0.33 tolerated(0.23) benign(0.002) TCGA-AC-A23H-01 9 138712932 138712932 G A CAMSAP1 Missense_Mutation p.S1192L 0.10 tolerated(0.06) benign(0.004) TCGA-AC-A23H-01 9 138714090 138714090 G T CAMSAP1 Missense_Mutation p.S806Y 0.13 deleterious(0) possibly_damaging(0.781) TCGA-AC-A23H-01 9 138714305 138714305 G A CAMSAP1 Silent p.L734L 0.15 TCGA-AC-A23H-01 9 138714819 138714819 G A CAMSAP1 Missense_Mutation p.S563L 0.21 tolerated(0.06) benign(0.064) TCGA-AC-A23H-01 9 138754417 138754417 G A CAMSAP1 Missense_Mutation p.S235L 0.31 tolerated(1) benign(0.002) TCGA-AC-A23H-01 9 138774803 138774803 G A CAMSAP1 Silent p.L94L 0.20 TCGA-AC-A23H-01 9 139301688 139301688 G A SDCCAG3 Missense_Mutation p.S243F 0.28 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 9 139401292 139401292 G A NOTCH1 Silent p.F1259F 0.23 TCGA-AC-A23H-01 9 139616691 139616691 G C FAM69B Missense_Mutation p.D141H 0.09 deleterious(0.03) benign(0.031) TCGA-AC-A23H-01 9 139836627 139836627 G C FBXW5 Missense_Mutation p.L323V 0.33 tolerated(0.18) benign(0.175) TCGA-AC-A23H-01 9 139836678 139836678 G A FBXW5 Silent p.L306L 0.28 TCGA-AC-A23H-01 9 139929444 139929444 G C C9orf139 Missense_Mutation p.E171Q 0.25 deleterious_low_confidence(0) unknown(0) TCGA-AC-A23H-01 9 139929454 139929454 G C C9orf139 Missense_Mutation p.R174T 0.27 tolerated_low_confidence(0.16) unknown(0) TCGA-AC-A23H-01 9 139945809 139945809 C G ENTPD2 Missense_Mutation p.E134Q 0.47 tolerated(0.47) benign(0.018) TCGA-AC-A23H-01 9 140002862 140002862 C T MAN1B1 Missense_Mutation p.S640F 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 9 140396172 140396172 G A PNPLA7 Missense_Mutation p.S494F 0.21 deleterious(0) possibly_damaging(0.813) TCGA-AC-A23H-01 9 140510507 140510507 C T C9orf37 Missense_Mutation p.D49N 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-AC-A23H-01 9 140637876 140637876 A G EHMT1 Missense_Mutation p.M293V 0.20 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-AC-A23H-01 9 14722627 14722627 C G CER1 Missense_Mutation p.G15A 0.28 tolerated(0.1) probably_damaging(0.998) TCGA-AC-A23H-01 9 14824945 14824945 C G FREM1 Missense_Mutation p.E643Q 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-AC-A23H-01 9 15472749 15472749 C G PSIP1 Splice_Site p.X287_splice 0.32 TCGA-AC-A23H-01 9 18928465 18928465 G C FAM154A Missense_Mutation p.S337C 0.16 tolerated(0.12) possibly_damaging(0.701) TCGA-AC-A23H-01 9 19080562 19080562 G C HAUS6 Missense_Mutation p.Q327E 0.19 tolerated(0.15) benign(0.007) TCGA-AC-A23H-01 9 19096674 19096674 G C HAUS6 Missense_Mutation p.F74L 0.35 deleterious(0) probably_damaging(0.984) TCGA-AC-A23H-01 9 19336401 19336401 C G DENND4C Missense_Mutation p.S908C 0.54 tolerated(0.12) possibly_damaging(0.669) TCGA-AC-A23H-01 9 20414255 20414255 G T MLLT3 Missense_Mutation p.H197N 0.17 deleterious(0) benign(0.111) TCGA-AC-A23H-01 9 20622269 20622269 G A MLLT3 5'UTR 0.09 TCGA-AC-A23H-01 9 20944691 20944691 C G FOCAD Missense_Mutation p.S1158C 0.39 deleterious(0) probably_damaging(0.962) TCGA-AC-A23H-01 9 21077165 21077165 C G IFNB1 3'UTR 0.50 TCGA-AC-A23H-01 9 21217191 21217191 C T IFNA16 Silent p.L38L 0.46 TCGA-AC-A23H-01 9 21227955 21227955 T C IFNA17 Missense_Mutation p.K73R 0.39 deleterious(0.03) benign(0.04) TCGA-AC-A23H-01 9 21228097 21228097 G C IFNA17 Missense_Mutation p.L26V 0.40 deleterious(0) possibly_damaging(0.843) TCGA-AC-A23H-01 9 2123746 2123746 G C SMARCA2 Missense_Mutation p.D1264H 0.09 possibly_damaging(0.861) TCGA-AC-A23H-01 9 26905603 26905603 G C PLAA Missense_Mutation p.S765C 0.17 deleterious(0) probably_damaging(0.936) TCGA-AC-A23H-01 9 26910388 26910388 G A PLAA Silent p.F535F 0.13 TCGA-AC-A23H-01 9 2717677 2717677 G A KCNV2 5'UTR 0.30 TCGA-AC-A23H-01 9 27228264 27228264 G A TEK Silent p.Q1087Q 0.39 TCGA-AC-A23H-01 9 2729706 2729706 C T KCNV2 Silent p.L539L 0.08 TCGA-AC-A23H-01 9 27550679 27550679 C G C9orf72 Missense_Mutation p.R373T 0.16 tolerated(0.66) benign(0.005) TCGA-AC-A23H-01 9 2811570 2811570 C T KIAA0020 Missense_Mutation p.E476K 0.26 tolerated(0.54) benign(0.016) TCGA-AC-A23H-01 9 2823817 2823817 C G KIAA0020 Silent p.V384V 0.10 TCGA-AC-A23H-01 9 32570984 32570984 G A NDUFB6 Missense_Mutation p.H83Y 0.18 tolerated(0.07) probably_damaging(0.994) TCGA-AC-A23H-01 9 3275613 3275613 C T RFX3 Splice_Site p.X325_splice 0.08 TCGA-AC-A23H-01 9 328024 328024 C G DOCK8 Missense_Mutation p.I299M 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 9 33037105 33037105 G A DNAJA1 Missense_Mutation p.E323K 0.34 tolerated(0.93) benign(0.008) TCGA-AC-A23H-01 9 33057640 33057640 C T SMU1 Missense_Mutation p.D275N 0.49 deleterious(0.04) probably_damaging(0.979) TCGA-AC-A23H-01 9 33941794 33941794 G A UBAP2 Silent p.V594V 0.23 TCGA-AC-A23H-01 9 33973198 33973198 G C UBAP2 Missense_Mutation p.F186L 0.15 deleterious(0.04) benign(0.048) TCGA-AC-A23H-01 9 33989072 33989072 G C UBAP2 Nonsense_Mutation p.S114* 0.35 TCGA-AC-A23H-01 9 34234326 34234326 C T UBAP1 Silent p.V113V 0.15 TCGA-AC-A23H-01 9 34250668 34250668 C T UBAP1 Missense_Mutation p.L491F 0.50 deleterious(0) probably_damaging(0.982) TCGA-AC-A23H-01 9 34257466 34257466 C G KIF24 Missense_Mutation p.Q713H 0.15 deleterious(0) probably_damaging(0.97) TCGA-AC-A23H-01 9 34724770 34724770 C G FAM205A Missense_Mutation p.E823Q 0.13 deleterious(0.04) possibly_damaging(0.582) TCGA-AC-A23H-01 9 34996648 34996648 G A DNAJB5 Missense_Mutation p.D314N 0.35 tolerated(0.1) probably_damaging(0.926) TCGA-AC-A23H-01 9 35044904 35044904 G C C9orf131 Missense_Mutation p.E760Q 0.17 tolerated(0.12) probably_damaging(0.997) TCGA-AC-A23H-01 9 35074432 35074432 C T FANCG Missense_Mutation p.E566K 0.12 deleterious(0) probably_damaging(0.977) TCGA-AC-A23H-01 9 35236515 35236515 G C UNC13B Missense_Mutation p.G68R 0.09 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-AC-A23H-01 9 35376133 35376133 G A UNC13B Missense_Mutation p.E493K 0.12 deleterious(0) probably_damaging(0.955) TCGA-AC-A23H-01 9 35398255 35398255 G A UNC13B Silent p.E1185E 0.11 TCGA-AC-A23H-01 9 35546494 35546494 G C RUSC2 5'UTR 0.16 TCGA-AC-A23H-01 9 35610685 35610685 G C CD72 Nonsense_Mutation p.S339* 0.13 TCGA-AC-A23H-01 9 35662537 35662537 G C ARHGEF39 Nonsense_Mutation p.S292* 0.10 TCGA-AC-A23H-01 9 35714766 35714766 C G TLN1 Missense_Mutation p.Q954H 0.50 tolerated(0.24) possibly_damaging(0.459) TCGA-AC-A23H-01 9 35723954 35723954 G A TLN1 Silent p.F259F 0.11 TCGA-AC-A23H-01 9 35752770 35752770 G C RGP1 Missense_Mutation p.D359H 0.12 deleterious(0) probably_damaging(0.94) TCGA-AC-A23H-01 9 36169863 36169863 G A CCIN Missense_Mutation p.D122N 0.10 deleterious(0.04) benign(0.025) TCGA-AC-A23H-01 9 37015043 37015043 C G PAX5 Missense_Mutation p.E121Q 0.14 deleterious(0) probably_damaging(0.98) TCGA-AC-A23H-01 9 37441304 37441304 C G ZBTB5 Missense_Mutation p.K415N 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A23H-01 9 37486228 37486228 G C POLR1E Intron 0.18 TCGA-AC-A23H-01 9 37777824 37777824 G A TRMT10B 3'UTR 0.12 TCGA-AC-A23H-01 9 37783976 37783976 C T EXOSC3 Missense_Mutation p.E137K 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-AC-A23H-01 9 40774052 40774052 C G ZNF658 Missense_Mutation p.G408A 0.34 tolerated(0.1) possibly_damaging(0.511) TCGA-AC-A23H-01 9 43625185 43625185 G A SPATA31A6 Nonsense_Mutation p.Q1168* 0.46 TCGA-AC-A23H-01 9 5465496 5465496 C G CD274 Intron 0.10 TCGA-AC-A23H-01 9 5765447 5765447 G A KIAA1432 Missense_Mutation p.A959T 0.21 deleterious(0) probably_damaging(0.98) TCGA-AC-A23H-01 9 5919831 5919831 C A KIAA2026 Missense_Mutation p.L2055F 0.30 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 9 5922142 5922142 C T KIAA2026 Missense_Mutation p.R1285Q 0.30 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 9 5929044 5929044 C T KIAA2026 Missense_Mutation p.R833K 0.17 deleterious(0) probably_damaging(0.98) TCGA-AC-A23H-01 9 6015410 6015410 C T RANBP6 Silent p.V66V 0.14 TCGA-AC-A23H-01 9 6330070 6330070 C G TPD52L3 3'UTR 0.11 TCGA-AC-A23H-01 9 6792969 6792969 C G KDM4C Intron 0.12 TCGA-AC-A23H-01 9 6880058 6880058 C G KDM4C Missense_Mutation p.Q226E 0.18 tolerated(0.24) benign(0.029) TCGA-AC-A23H-01 9 69117825 69117825 G C PGM5P2 RNA 0.16 TCGA-AC-A23H-01 9 69410099 69410099 G T ANKRD20A4 Missense_Mutation p.S338I 0.07 deleterious(0.02) benign(0.003) TCGA-AC-A23H-01 9 71152332 71152332 G C TMEM252 Missense_Mutation p.S119C 0.46 tolerated(0.18) benign(0.025) TCGA-AC-A23H-01 9 713021 713021 C T KANK1 Missense_Mutation p.S752L 0.16 deleterious(0.01) benign(0.272) TCGA-AC-A23H-01 9 71628914 71628914 C T PRKACG Missense_Mutation p.G32E 0.21 tolerated(1) benign(0) TCGA-AC-A23H-01 9 72333514 72333514 C A PTAR1 Intron 0.23 TCGA-AC-A23H-01 9 72833249 72833249 C G MAMDC2 Intron 0.28 TCGA-AC-A23H-01 9 73151037 73151037 C G TRPM3 Missense_Mutation p.K1652N 0.20 tolerated_low_confidence(0.15) possibly_damaging(0.798) TCGA-AC-A23H-01 9 732392 732392 C G KANK1 Nonsense_Mutation p.S1007* 0.28 TCGA-AC-A23H-01 9 73477859 73477859 C G TRPM3 Missense_Mutation p.E143Q 0.35 deleterious(0.01) possibly_damaging(0.648) TCGA-AC-A23H-01 9 73736117 73736117 G A TRPM3 Missense_Mutation p.L52F 0.32 tolerated_low_confidence(0.05) probably_damaging(0.991) TCGA-AC-A23H-01 9 74365110 74365110 G A TMEM2 Silent p.F60F 0.33 TCGA-AC-A23H-01 9 74526653 74526653 G T C9orf85 Translation_Start_Site p.M1? 0.21 deleterious(0) possibly_damaging(0.641) TCGA-AC-A23H-01 9 74667141 74667141 C G C9orf57 3'UTR 0.24 TCGA-AC-A23H-01 9 74838095 74838095 G C GDA Missense_Mutation p.L222F 0.19 deleterious(0) probably_damaging(0.936) TCGA-AC-A23H-01 9 77400787 77400787 C A TRPM6 Intron 0.33 TCGA-AC-A23H-01 9 78601083 78601083 G A PCSK5 Silent p.R111R 0.28 TCGA-AC-A23H-01 9 79319895 79319895 G A PRUNE2 Missense_Mutation p.S2432F 0.21 deleterious(0) probably_damaging(0.959) TCGA-AC-A23H-01 9 79321077 79321077 G C PRUNE2 Missense_Mutation p.S2038C 0.22 tolerated(0.19) benign(0.002) TCGA-AC-A23H-01 9 79321864 79321864 C A PRUNE2 Nonsense_Mutation p.E1776* 0.17 TCGA-AC-A23H-01 9 79321897 79321897 C G PRUNE2 Missense_Mutation p.D1765H 0.17 deleterious(0.03) possibly_damaging(0.875) TCGA-AC-A23H-01 9 79325415 79325415 C T PRUNE2 Missense_Mutation p.G592E 0.22 tolerated(1) benign(0.02) TCGA-AC-A23H-01 9 79520955 79520955 G C PRUNE2 5'UTR 0.21 TCGA-AC-A23H-01 9 79841411 79841411 A C VPS13A Missense_Mutation p.K418N 0.24 deleterious(0.01) benign(0.091) TCGA-AC-A23H-01 9 79843067 79843067 G C VPS13A Missense_Mutation p.L494F 0.31 deleterious(0) probably_damaging(0.979) TCGA-AC-A23H-01 9 79852968 79852968 C T VPS13A Missense_Mutation p.S549L 0.18 tolerated(0.36) benign(0.001) TCGA-AC-A23H-01 9 80030938 80030938 G A VPS13A 3'UTR 0.18 TCGA-AC-A23H-01 9 80879216 80879216 C T CEP78 Missense_Mutation p.L538F 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A23H-01 9 82188660 82188660 G C TLE4 Silent p.R34R 0.28 TCGA-AC-A23H-01 9 82188670 82188670 G C TLE4 Missense_Mutation p.E38Q 0.27 deleterious(0) probably_damaging(0.925) TCGA-AC-A23H-01 9 84198962 84198962 C T TLE1 3'UTR 0.29 TCGA-AC-A23H-01 9 84606897 84606897 C T SPATA31D1 Silent p.F504F 0.21 TCGA-AC-A23H-01 9 8497247 8497247 C T PTPRD Missense_Mutation p.E782K 0.28 tolerated(0.24) probably_damaging(0.973) TCGA-AC-A23H-01 9 85862997 85862997 G T FRMD3 Missense_Mutation p.P544T 0.25 tolerated(0.07) probably_damaging(0.997) TCGA-AC-A23H-01 9 85863082 85863082 C T FRMD3 Silent p.L515L 0.28 TCGA-AC-A23H-01 9 86571086 86571086 G A C9orf64 Silent p.L110L 0.16 TCGA-AC-A23H-01 9 86617579 86617579 G C RMI1 Missense_Mutation p.E560Q 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A23H-01 9 87325699 87325699 C T NTRK2 Silent p.P192P 0.18 TCGA-AC-A23H-01 9 87636238 87636238 G C NTRK2 Silent p.L801L 0.49 TCGA-AC-A23H-01 9 88248161 88248161 C T AGTPBP1 Missense_Mutation p.M437I 0.13 tolerated(0.39) benign(0) TCGA-AC-A23H-01 9 88916365 88916365 G A ZCCHC6 Nonsense_Mutation p.Q1416* 0.42 TCGA-AC-A23H-01 9 90311999 90311999 G A DAPK1 Missense_Mutation p.D831N 0.19 tolerated(0.15) probably_damaging(0.98) TCGA-AC-A23H-01 9 90501339 90501339 G T SPATA31E1 Missense_Mutation p.R646I 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-AC-A23H-01 9 91616298 91616298 G C S1PR3 Missense_Mutation p.L61F 0.25 deleterious(0.01) possibly_damaging(0.558) TCGA-AC-A23H-01 9 95030453 95030453 C T IARS Intron 0.45 TCGA-AC-A23H-01 9 95062252 95062252 C T NOL8 Silent p.Q1074Q 0.16 TCGA-AC-A23H-01 9 95077077 95077077 G A NOL8 Silent p.I610I 0.20 TCGA-AC-A23H-01 9 95155461 95155461 C G OGN Missense_Mutation p.D112H 0.15 deleterious(0.01) possibly_damaging(0.519) TCGA-AC-A23H-01 9 95227238 95227238 G A ASPN Silent p.I225I 0.19 TCGA-AC-A23H-01 9 95599991 95599991 G T ANKRD19P RNA 0.13 TCGA-AC-A23H-01 9 96000599 96000599 G A WNK2 Missense_Mutation p.E440K 0.12 unknown(0) TCGA-AC-A23H-01 9 96847012 96847012 G A PTPDC1 Missense_Mutation p.S67N 0.18 tolerated_low_confidence(0.15) benign(0.005) TCGA-AC-A23H-01 9 96870241 96870241 G A PTPDC1 3'UTR 0.11 TCGA-AC-A23H-01 9 97081091 97081091 C T NUTM2F Missense_Mutation p.V643M 0.29 deleterious(0.02) benign(0.075) TCGA-AC-A23H-01 9 97369126 97369126 C T FBP1 Missense_Mutation p.E226K 0.35 tolerated(0.34) benign(0.14) TCGA-AC-A23H-01 9 97563058 97563058 C G C9orf3 Missense_Mutation p.H380D 0.30 deleterious(0) probably_damaging(0.973) TCGA-AC-A23H-01 9 98224263 98224263 C G PTCH1 Missense_Mutation p.D860H 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 9 99580245 99580245 G C ZNF782 Nonsense_Mutation p.S687* 0.15 TCGA-AC-A23H-01 9 99691276 99691276 G C NUTM2G 5'Flank 0.18 TCGA-AC-A23H-01 X 100240741 100240741 G C ARL13A Silent p.L72L 0.28 TCGA-AC-A23H-01 X 100349772 100349772 C G TMEM35 Missense_Mutation p.P111A 0.30 tolerated(0.11) probably_damaging(0.998) TCGA-AC-A23H-01 X 100656567 100656567 C T RPL36A-HNRNPH2 Intron 0.12 TCGA-AC-A23H-01 X 100667407 100667407 C T HNRNPH2 Missense_Mutation p.P144L 0.21 tolerated(0.11) benign(0.033) TCGA-AC-A23H-01 X 100808037 100808037 G A ARMCX1 Missense_Mutation p.E42K 0.29 tolerated_low_confidence(0.29) benign(0.002) TCGA-AC-A23H-01 X 101096072 101096072 C G NXF5 Missense_Mutation p.L132F 0.20 tolerated(0.05) benign(0.314) TCGA-AC-A23H-01 X 101581486 101581486 C T NXF2 3'UTR 0.19 TCGA-AC-A23H-01 X 101818177 101818177 G C NXF4 RNA 0.17 TCGA-AC-A23H-01 X 10182022 10182022 C T CLCN4 Silent p.I626I 0.22 TCGA-AC-A23H-01 X 101908749 101908749 C T GPRASP1 5'UTR 0.27 TCGA-AC-A23H-01 X 101909941 101909941 C G GPRASP1 Nonsense_Mutation p.S367* 0.23 TCGA-AC-A23H-01 X 102337051 102337051 G A NXF3 Intron 0.29 TCGA-AC-A23H-01 X 102864443 102864443 G C TCEAL3 Missense_Mutation p.E151Q 0.21 deleterious(0.03) benign(0.33) TCGA-AC-A23H-01 X 103411548 103411548 C G FAM199X Missense_Mutation p.R28G 0.36 tolerated_low_confidence(0.66) benign(0.063) TCGA-AC-A23H-01 X 105905389 105905389 G A CXorf57 Missense_Mutation p.R708Q 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-AC-A23H-01 X 106186349 106186349 G C MORC4 Missense_Mutation p.S591C 0.26 deleterious(0) probably_damaging(0.96) TCGA-AC-A23H-01 X 107288276 107288276 C T VSIG1 5'UTR 0.19 TCGA-AC-A23H-01 X 107920853 107920853 C T COL4A5 Missense_Mutation p.P1311L 0.30 unknown(0) TCGA-AC-A23H-01 X 107938522 107938522 C T COL4A5 Missense_Mutation p.S1616L 0.26 probably_damaging(0.981) TCGA-AC-A23H-01 X 108625350 108625350 G C GUCY2F Silent p.L1049L 0.22 TCGA-AC-A23H-01 X 108926403 108926403 C G ACSL4 Missense_Mutation p.E105Q 0.21 deleterious(0) possibly_damaging(0.833) TCGA-AC-A23H-01 X 109694739 109694739 C G RGAG1 Silent p.L298L 0.22 TCGA-AC-A23H-01 X 109697268 109697268 C T RGAG1 Silent p.F1141F 0.27 TCGA-AC-A23H-01 X 110406824 110406824 C T PAK3 Missense_Mutation p.S248L 0.29 tolerated(0.38) benign(0.001) TCGA-AC-A23H-01 X 111022282 111022282 G C TRPC5 Silent p.V721V 0.26 TCGA-AC-A23H-01 X 111195346 111195346 G C TRPC5 Silent p.L101L 0.13 TCGA-AC-A23H-01 X 114537906 114537906 G A LUZP4 Missense_Mutation p.D89N 0.51 tolerated(0.15) probably_damaging(0.95) TCGA-AC-A23H-01 X 11786799 11786799 G A MSL3 Missense_Mutation p.E427K 0.17 tolerated(0.08) possibly_damaging(0.476) TCGA-AC-A23H-01 X 11790741 11790741 G A MSL3 Silent p.V461V 0.19 TCGA-AC-A23H-01 X 118222089 118222089 G C KIAA1210 Nonsense_Mutation p.S1035* 0.36 TCGA-AC-A23H-01 X 118243104 118243104 C T KIAA1210 Missense_Mutation p.E238K 0.23 tolerated(0.1) benign(0.003) TCGA-AC-A23H-01 X 118771006 118771006 C G SEPT6 Missense_Mutation p.D314H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 X 118972343 118972343 C T UPF3B Missense_Mutation p.E332K 0.22 tolerated(0.11) possibly_damaging(0.725) TCGA-AC-A23H-01 X 119004531 119004531 G C RNF113A 3'UTR 0.35 TCGA-AC-A23H-01 X 119005243 119005243 C G RNF113A Missense_Mutation p.E112Q 0.25 tolerated(0.29) benign(0.007) TCGA-AC-A23H-01 X 119691862 119691862 C T CUL4B Missense_Mutation p.E215K 0.21 tolerated(0.31) benign(0.007) TCGA-AC-A23H-01 X 119760297 119760297 C T C1GALT1C1 Missense_Mutation p.G242E 0.52 deleterious(0.01) possibly_damaging(0.883) TCGA-AC-A23H-01 X 120008888 120008888 C T CT47B1 Missense_Mutation p.E213K 0.23 deleterious(0.01) unknown(0) TCGA-AC-A23H-01 X 123179050 123179050 C T STAG2 Nonsense_Mutation p.Q167* 0.23 TCGA-AC-A23H-01 X 123615721 123615721 C G TENM1 Missense_Mutation p.L1270F 0.28 deleterious(0.03) benign(0.08) TCGA-AC-A23H-01 X 12736042 12736042 G A FRMPD4 Missense_Mutation p.D1033N 0.22 deleterious_low_confidence(0.05) benign(0.002) TCGA-AC-A23H-01 X 12837750 12837750 G A PRPS2 Missense_Mutation p.V222M 0.24 deleterious(0.03) probably_damaging(0.989) TCGA-AC-A23H-01 X 128695189 128695189 C G OCRL Missense_Mutation p.F286L 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-AC-A23H-01 X 128696364 128696364 C G OCRL Missense_Mutation p.Q315E 0.22 tolerated(0.06) benign(0.202) TCGA-AC-A23H-01 X 128963021 128963021 G A ZDHHC9 Silent p.F88F 0.24 TCGA-AC-A23H-01 X 12904084 12904084 C T TLR7 Missense_Mutation p.L153F 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A23H-01 X 129060220 129060220 C G UTP14A Missense_Mutation p.L650V 0.21 deleterious(0.01) benign(0.206) TCGA-AC-A23H-01 X 129200908 129200908 G A ELF4 Silent p.L594L 0.23 TCGA-AC-A23H-01 X 129201241 129201241 G C ELF4 Missense_Mutation p.L483V 0.34 tolerated(0.3) probably_damaging(0.994) TCGA-AC-A23H-01 X 129479236 129479236 C T SLC25A14 Silent p.I52I 0.22 TCGA-AC-A23H-01 X 129505535 129505535 C T SLC25A14 Intron 0.29 TCGA-AC-A23H-01 X 13061257 13061257 C T FAM9C Missense_Mutation p.E58K 0.16 tolerated(0.07) benign(0) TCGA-AC-A23H-01 X 132351894 132351894 C A TFDP3 Nonsense_Mutation p.E132* 0.22 TCGA-AC-A23H-01 X 134186115 134186115 C T FAM127B Missense_Mutation p.M8I 0.23 tolerated(1) benign(0.001) TCGA-AC-A23H-01 X 134480999 134480999 G A ZNF449 5'UTR 0.26 TCGA-AC-A23H-01 X 134481446 134481446 G A ZNF449 Intron 0.35 TCGA-AC-A23H-01 X 135429316 135429316 G A GPR112 Missense_Mutation p.D1151N 0.22 tolerated(0.38) benign(0.012) TCGA-AC-A23H-01 X 13642005 13642005 G A EGFL6 Missense_Mutation p.E417K 0.21 tolerated(0.2) benign(0.088) TCGA-AC-A23H-01 X 13642008 13642008 G C EGFL6 Missense_Mutation p.D418H 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A23H-01 X 13681278 13681278 C G TCEANC Missense_Mutation p.I247M 0.26 tolerated(0.16) benign(0.298) TCGA-AC-A23H-01 X 13787439 13787439 C G OFD1 3'UTR 0.35 TCGA-AC-A23H-01 X 140271168 140271168 C G LDOC1 Silent p.L13L 0.33 TCGA-AC-A23H-01 X 140994641 140994641 C T MAGEC1 Missense_Mutation p.S484F 0.23 deleterious_low_confidence(0.01) benign(0.004) TCGA-AC-A23H-01 X 140994850 140994850 C T MAGEC1 Nonsense_Mutation p.Q554* 0.16 TCGA-AC-A23H-01 X 141290720 141290720 C T MAGEC2 Missense_Mutation p.D352N 0.18 tolerated(0.13) benign(0.232) TCGA-AC-A23H-01 X 141291015 141291015 C T MAGEC2 Silent p.L253L 0.22 TCGA-AC-A23H-01 X 142967229 142967229 C G UBE2NL Missense_Mutation p.I9M 0.33 tolerated(0.12) benign(0.025) TCGA-AC-A23H-01 X 144906173 144906173 G C SLITRK2 Missense_Mutation p.E744Q 0.17 tolerated(0.26) benign(0.022) TCGA-AC-A23H-01 X 147744161 147744161 C G AFF2 Missense_Mutation p.L305V 0.17 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 X 148037455 148037455 G T AFF2 Missense_Mutation p.G627V 0.21 deleterious(0.05) probably_damaging(1) TCGA-AC-A23H-01 X 149828937 149828937 G T MTM1 Nonsense_Mutation p.E483* 0.24 TCGA-AC-A23H-01 X 151092146 151092146 G A MAGEA4 Missense_Mutation p.E4K 0.27 tolerated(0.75) possibly_damaging(0.842) TCGA-AC-A23H-01 X 151870429 151870429 G C MAGEA6 3'UTR 0.20 TCGA-AC-A23H-01 X 151900219 151900219 C G MAGEA12 Missense_Mutation p.Q194H 0.24 tolerated(0.09) benign(0.014) TCGA-AC-A23H-01 X 152101512 152101512 G T ZNF185 Missense_Mutation p.G372V 0.31 deleterious(0.01) possibly_damaging(0.733) TCGA-AC-A23H-01 X 152612650 152612650 G A ZNF275 Silent p.E169E 0.27 TCGA-AC-A23H-01 X 152713151 152713151 C G HAUS7 3'UTR 0.31 TCGA-AC-A23H-01 X 152713279 152713279 G A TREX2 5'UTR 0.25 TCGA-AC-A23H-01 X 152825294 152825294 G A ATP2B3 Silent p.R911R 0.30 TCGA-AC-A23H-01 X 152845908 152845908 G A ATP2B3 3'UTR 0.40 TCGA-AC-A23H-01 X 152915644 152915644 G T DUSP9 Nonsense_Mutation p.E347* 0.22 TCGA-AC-A23H-01 X 152960586 152960586 C T SLC6A8 Nonsense_Mutation p.Q609* 0.38 TCGA-AC-A23H-01 X 153049525 153049525 C T SRPK3 Missense_Mutation p.S335F 0.24 deleterious(0.02) possibly_damaging(0.485) TCGA-AC-A23H-01 X 153070071 153070071 G A PDZD4 Silent p.L349L 0.42 TCGA-AC-A23H-01 X 153208406 153208406 C T RENBP Silent p.L196L 0.11 TCGA-AC-A23H-01 X 153247681 153247681 C G TMEM187 Missense_Mutation p.F56L 0.31 tolerated(0.24) possibly_damaging(0.453) TCGA-AC-A23H-01 X 153295740 153295740 G A MECP2 3'UTR 0.19 TCGA-AC-A23H-01 X 153540979 153540979 G A TKTL1 Missense_Mutation p.R240K 0.21 tolerated(0.68) benign(0.006) TCGA-AC-A23H-01 X 153555942 153555942 C T TKTL1 Silent p.L469L 0.27 TCGA-AC-A23H-01 X 153582801 153582801 C G FLNA Silent p.L1788L 0.24 TCGA-AC-A23H-01 X 153585974 153585974 C T FLNA Silent p.P1591P 0.25 TCGA-AC-A23H-01 X 153586611 153586611 C G FLNA Missense_Mutation p.D1571H 0.23 deleterious(0) probably_damaging(0.987) TCGA-AC-A23H-01 X 153596430 153596430 C T FLNA Silent p.L134L 0.19 TCGA-AC-A23H-01 X 153626951 153626951 G A RPL10 Intron 0.30 TCGA-AC-A23H-01 X 15381243 15381243 C T FIGF Missense_Mutation p.E97K 0.10 deleterious(0.03) benign(0.041) TCGA-AC-A23H-01 X 153927707 153927707 C T GAB3 Missense_Mutation p.A403T 0.26 tolerated(0.45) benign(0.003) TCGA-AC-A23H-01 X 154113468 154113468 G A H2AFB1 Silent p.L48L 0.12 TCGA-AC-A23H-01 X 154157864 154157864 G C F8 Missense_Mutation p.Q1401E 0.22 tolerated(0.2) benign(0.019) TCGA-AC-A23H-01 X 154294234 154294234 C T MTCP1 Missense_Mutation p.E18K 0.25 tolerated(1) benign(0.109) TCGA-AC-A23H-01 X 155004068 155004068 G A SPRY3 Missense_Mutation p.E179K 0.19 deleterious(0.01) possibly_damaging(0.507) TCGA-AC-A23H-01 X 155237196 155237196 G C IL9R Missense_Mutation p.R299T 0.18 tolerated(0.15) benign(0.097) TCGA-AC-A23H-01 X 15544190 15544190 G T BMX Nonsense_Mutation p.E286* 0.21 TCGA-AC-A23H-01 X 16846261 16846261 G A TXLNG Silent p.Q181Q 0.11 TCGA-AC-A23H-01 X 1718126 1718126 G C AKAP17A Missense_Mutation p.R318T 0.44 deleterious(0) unknown(0) TCGA-AC-A23H-01 X 18198702 18198702 G A BEND2 Missense_Mutation p.R453C 0.20 tolerated(0.18) benign(0.001) TCGA-AC-A23H-01 X 18671596 18671596 C T CDKL5 Missense_Mutation p.H1009Y 0.18 deleterious_low_confidence(0) benign(0.152) TCGA-AC-A23H-01 X 18822166 18822166 G A PPEF1 Missense_Mutation p.E408K 0.13 deleterious(0.02) possibly_damaging(0.852) TCGA-AC-A23H-01 X 19022967 19022967 G A GPR64 Nonsense_Mutation p.Q624* 0.16 TCGA-AC-A23H-01 X 19026100 19026100 G C GPR64 Missense_Mutation p.Q522E 0.20 deleterious(0.02) probably_damaging(0.955) TCGA-AC-A23H-01 X 19042054 19042054 G A GPR64 Silent p.L161L 0.35 TCGA-AC-A23H-01 X 19433296 19433296 C G MAP3K15 Missense_Mutation p.E507Q 0.19 tolerated(0.12) probably_damaging(1) TCGA-AC-A23H-01 X 20183077 20183077 C T RPS6KA3 Silent p.L568L 0.22 TCGA-AC-A23H-01 X 21450881 21450881 C T CNKSR2 Missense_Mutation p.S127L 0.27 deleterious(0) possibly_damaging(0.475) TCGA-AC-A23H-01 X 21627213 21627213 G T CNKSR2 Nonsense_Mutation p.E724* 0.23 TCGA-AC-A23H-01 X 21659705 21659705 C T CNKSR2 Intron 0.12 TCGA-AC-A23H-01 X 21667121 21667121 G A CNKSR2 Silent p.L955L 0.15 TCGA-AC-A23H-01 X 21670583 21670583 G C CNKSR2 Missense_Mutation p.D1017H 0.22 tolerated(0.05) benign(0.289) TCGA-AC-A23H-01 X 2184966 2184966 C T DHRSX Silent p.Q137Q 0.23 TCGA-AC-A23H-01 X 21871566 21871566 C T MBTPS2 Silent p.F205F 0.20 TCGA-AC-A23H-01 X 22010730 22010730 C T SMS Silent p.L321L 0.18 TCGA-AC-A23H-01 X 23953447 23953447 C G CXorf58 Missense_Mutation p.I230M 0.55 tolerated(0.24) benign(0.112) TCGA-AC-A23H-01 X 23953535 23953535 G A CXorf58 Missense_Mutation p.E260K 0.14 tolerated(0.41) benign(0.004) TCGA-AC-A23H-01 X 23957414 23957414 C G CXorf58 Missense_Mutation p.I331M 0.18 deleterious_low_confidence(0.03) benign(0.11) TCGA-AC-A23H-01 X 2406970 2406970 G A ZBED1 Silent p.L597L 0.13 TCGA-AC-A23H-01 X 24197701 24197701 G A ZFX Missense_Mutation p.E154K 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-AC-A23H-01 X 24839691 24839691 C T POLA1 Silent p.V1178V 0.20 TCGA-AC-A23H-01 X 24844657 24844657 C T POLA1 Silent p.V1219V 0.24 TCGA-AC-A23H-01 X 2779626 2779626 G A GYG2 Missense_Mutation p.E332K 0.16 tolerated(0.88) benign(0.013) TCGA-AC-A23H-01 X 2779692 2779692 C T GYG2 Nonsense_Mutation p.Q354* 0.20 TCGA-AC-A23H-01 X 27840228 27840228 C T MAGEB10 Missense_Mutation p.P269S 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-AC-A23H-01 X 2853180 2853180 C G ARSE Missense_Mutation p.G488A 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-AC-A23H-01 X 29301120 29301120 C T IL1RAPL1 Nonsense_Mutation p.R50* 0.44 TCGA-AC-A23H-01 X 29938209 29938209 G T IL1RAPL1 Missense_Mutation p.R352L 0.17 deleterious(0.04) benign(0.256) TCGA-AC-A23H-01 X 299558 299558 C G PPP2R3B Missense_Mutation p.E475D 0.28 tolerated(0.24) benign(0.007) TCGA-AC-A23H-01 X 299630 299630 C T PPP2R3B Silent p.G451G 0.18 TCGA-AC-A23H-01 X 29972752 29972752 G A IL1RAPL1 Missense_Mutation p.E439K 0.24 deleterious(0) probably_damaging(0.994) TCGA-AC-A23H-01 X 29973317 29973317 G A IL1RAPL1 Missense_Mutation p.E491K 0.40 tolerated(0.3) probably_damaging(0.997) TCGA-AC-A23H-01 X 31697677 31697677 C T DMD Missense_Mutation p.E2563K 0.25 possibly_damaging(0.486) TCGA-AC-A23H-01 X 3229461 3229461 C T MXRA5 Silent p.L2261L 0.20 TCGA-AC-A23H-01 X 32382737 32382737 C T DMD Missense_Mutation p.E1706K 0.18 possibly_damaging(0.486) TCGA-AC-A23H-01 X 3238649 3238649 C T MXRA5 Missense_Mutation p.D1693N 0.36 tolerated(1) benign(0.001) TCGA-AC-A23H-01 X 3240107 3240107 C T MXRA5 Missense_Mutation p.D1207N 0.20 tolerated(0.18) benign(0.003) TCGA-AC-A23H-01 X 32472826 32472826 C G DMD Missense_Mutation p.E1186Q 0.38 probably_damaging(0.979) TCGA-AC-A23H-01 X 32536031 32536031 T A DMD Intron 0.25 TCGA-AC-A23H-01 X 3539329 3539329 C T PRKX Missense_Mutation p.D282N 0.19 deleterious(0) possibly_damaging(0.748) TCGA-AC-A23H-01 X 35969363 35969363 G C CXorf22 Missense_Mutation p.G258R 0.41 deleterious(0) probably_damaging(0.998) TCGA-AC-A23H-01 X 35989991 35989991 C G CXorf22 Silent p.L721L 0.25 TCGA-AC-A23H-01 X 36366381 36366381 G A CXorf30 Missense_Mutation p.E307K 0.14 tolerated(0.05) probably_damaging(0.997) TCGA-AC-A23H-01 X 37028867 37028867 G C FAM47C Missense_Mutation p.R795P 0.27 deleterious(0.01) possibly_damaging(0.567) TCGA-AC-A23H-01 X 37664367 37664367 C T CYBB Silent p.L420L 0.29 TCGA-AC-A23H-01 X 38145107 38145107 C G RPGR Missense_Mutation p.E1049Q 0.20 unknown(0) TCGA-AC-A23H-01 X 38145215 38145215 C A RPGR Missense_Mutation p.G1013W 0.23 unknown(0) TCGA-AC-A23H-01 X 38176595 38176595 C A RPGR Missense_Mutation p.G198V 0.14 probably_damaging(1) TCGA-AC-A23H-01 X 38262976 38262976 C T OTC Nonsense_Mutation p.Q216* 0.24 TCGA-AC-A23H-01 X 40542223 40542223 C T MED14 Missense_Mutation p.E695K 0.21 tolerated(0.51) possibly_damaging(0.864) TCGA-AC-A23H-01 X 40990750 40990750 G C USP9X Missense_Mutation p.E95Q 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-AC-A23H-01 X 41048645 41048645 G C USP9X Missense_Mutation p.L1298F 0.20 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 X 41206171 41206171 C A DDX3X Missense_Mutation p.L559I 0.20 tolerated(0.31) benign(0.279) TCGA-AC-A23H-01 X 43652716 43652716 G A MAOB Missense_Mutation p.S293L 0.18 deleterious(0) probably_damaging(0.919) TCGA-AC-A23H-01 X 44101449 44101449 C G EFHC2 Missense_Mutation p.E400Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-AC-A23H-01 X 44820632 44820632 C G KDM6A Missense_Mutation p.P110R 0.15 deleterious(0.04) benign(0.183) TCGA-AC-A23H-01 X 46332439 46332439 G C KRBOX4 Missense_Mutation p.E170Q 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-AC-A23H-01 X 46359157 46359157 G C ZNF674 3'UTR 0.22 TCGA-AC-A23H-01 X 46917722 46917722 C G JADE3 Missense_Mutation p.S572C 0.19 deleterious_low_confidence(0.04) benign(0.264) TCGA-AC-A23H-01 X 47001649 47001649 G C NDUFB11 3'UTR 0.29 TCGA-AC-A23H-01 X 47035949 47035949 C G RBM10 Silent p.P209P 0.19 TCGA-AC-A23H-01 X 47060715 47060715 G A UBA1 Missense_Mutation p.D210N 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A23H-01 X 47100714 47100714 C G USP11 Silent p.L338L 0.18 TCGA-AC-A23H-01 X 47835487 47835487 C G ZNF182 3'UTR 0.32 TCGA-AC-A23H-01 X 47836625 47836625 C G ZNF182 Missense_Mutation p.E287D 0.50 deleterious(0) probably_damaging(0.986) TCGA-AC-A23H-01 X 47920250 47920250 C T ZNF630 Silent p.K30K 0.25 TCGA-AC-A23H-01 X 48125765 48125765 G C SSX1 Missense_Mutation p.E170D 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A23H-01 X 48370728 48370728 G A PORCN Missense_Mutation p.V130M 0.12 deleterious(0) probably_damaging(0.989) TCGA-AC-A23H-01 X 48418485 48418485 G C TBC1D25 Missense_Mutation p.E397Q 0.14 tolerated(0.3) possibly_damaging(0.492) TCGA-AC-A23H-01 X 48418497 48418497 G C TBC1D25 Missense_Mutation p.D401H 0.26 tolerated(0.08) probably_damaging(1) TCGA-AC-A23H-01 X 48681410 48681410 G A HDAC6 Missense_Mutation p.M867I 0.18 tolerated(0.2) benign(0.001) TCGA-AC-A23H-01 X 48926201 48926201 C T CCDC120 3'UTR 0.23 TCGA-AC-A23H-01 X 48935539 48935539 C G WDR45 Silent p.V29V 0.20 TCGA-AC-A23H-01 X 49081268 49081268 G T CACNA1F Nonsense_Mutation p.S622* 0.18 TCGA-AC-A23H-01 X 49106736 49106736 G T CCDC22 3'UTR 0.24 TCGA-AC-A23H-01 X 49138468 49138468 C T PPP1R3F Missense_Mutation p.S362L 0.32 deleterious_low_confidence(0) benign(0.062) TCGA-AC-A23H-01 X 49861489 49861489 C T CLCN5 3'UTR 0.30 TCGA-AC-A23H-01 X 49861522 49861522 C T CLCN5 3'UTR 0.30 TCGA-AC-A23H-01 X 50122992 50122992 C G DGKK RNA 0.16 TCGA-AC-A23H-01 X 50135375 50135375 G C DGKK RNA 0.22 TCGA-AC-A23H-01 X 50146136 50146136 G A DGKK RNA 0.26 TCGA-AC-A23H-01 X 50146561 50146561 C G DGKK RNA 0.19 TCGA-AC-A23H-01 X 50351126 50351126 C G SHROOM4 Missense_Mutation p.E1006Q 0.20 deleterious(0.01) possibly_damaging(0.703) TCGA-AC-A23H-01 X 50376561 50376561 G A SHROOM4 Missense_Mutation p.H838Y 0.15 deleterious(0.02) benign(0.243) TCGA-AC-A23H-01 X 50659264 50659264 C T BMP15 Missense_Mutation p.S279F 0.13 tolerated(0.69) benign(0.002) TCGA-AC-A23H-01 X 51644659 51644659 G C MAGED1 Missense_Mutation p.R713T 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.674) TCGA-AC-A23H-01 X 52826372 52826372 G C SPANXN5 Nonsense_Mutation p.S6* 0.20 TCGA-AC-A23H-01 X 52844169 52844169 G A XAGE5 Missense_Mutation p.E78K 0.19 tolerated(0.12) possibly_damaging(0.545) TCGA-AC-A23H-01 X 53112400 53112400 C G TSPYL2 Silent p.L240L 0.17 TCGA-AC-A23H-01 X 53116972 53116972 G A TSPYL2 Missense_Mutation p.E645K 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-AC-A23H-01 X 53264093 53264093 C G IQSEC2 Missense_Mutation p.D1259H 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.808) TCGA-AC-A23H-01 X 53283759 53283759 C G IQSEC2 Missense_Mutation p.E452Q 0.20 deleterious(0.04) benign(0.373) TCGA-AC-A23H-01 X 53458353 53458353 C G HSD17B10 Nonstop_Mutation p.*262Sext*28 0.38 TCGA-AC-A23H-01 X 53578136 53578136 C G HUWE1 Missense_Mutation p.Q3037H 0.22 possibly_damaging(0.522) TCGA-AC-A23H-01 X 53610641 53610641 C G HUWE1 Missense_Mutation p.K1799N 0.25 benign(0.027) TCGA-AC-A23H-01 X 53642741 53642741 G A HUWE1 Silent p.P671P 0.17 TCGA-AC-A23H-01 X 54043158 54043158 C G PHF8 Missense_Mutation p.E192Q 0.23 tolerated(0.51) benign(0.013) TCGA-AC-A23H-01 X 54114265 54114265 C G FAM120C Missense_Mutation p.D854H 0.19 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 X 54117849 54117849 G A FAM120C Nonsense_Mutation p.Q775* 0.20 TCGA-AC-A23H-01 X 54159179 54159179 C A FAM120C Nonsense_Mutation p.E670* 0.23 TCGA-AC-A23H-01 X 54780365 54780365 G C ITIH6 Nonsense_Mutation p.S1079* 0.15 TCGA-AC-A23H-01 X 54837515 54837515 G C MAGED2 Missense_Mutation p.E267Q 0.22 tolerated(0.06) possibly_damaging(0.597) TCGA-AC-A23H-01 X 54986325 54986325 G A PFKFB1 Nonsense_Mutation p.Q107* 0.27 TCGA-AC-A23H-01 X 55028814 55028814 C G APEX2 Silent p.L124L 0.19 TCGA-AC-A23H-01 X 55033189 55033189 C G APEX2 Missense_Mutation p.S293C 0.40 tolerated(0.31) benign(0.013) TCGA-AC-A23H-01 X 55046763 55046763 C A ALAS2 Missense_Mutation p.K271N 0.12 deleterious(0) possibly_damaging(0.853) TCGA-AC-A23H-01 X 55052255 55052255 C T ALAS2 Missense_Mutation p.G60E 0.13 tolerated(0.45) benign(0.003) TCGA-AC-A23H-01 X 55289705 55289705 C T PAGE3 Missense_Mutation p.E58K 0.21 tolerated(0.09) benign(0.058) TCGA-AC-A23H-01 X 55514073 55514073 G C USP51 Missense_Mutation p.L434V 0.26 deleterious(0.03) probably_damaging(0.973) TCGA-AC-A23H-01 X 57620690 57620690 C G ZXDB Missense_Mutation p.L737V 0.17 tolerated(0.08) benign(0.17) TCGA-AC-A23H-01 X 6069033 6069033 C T NLGN4X Intron 0.10 TCGA-AC-A23H-01 X 62944579 62944579 C T ARHGEF9 Missense_Mutation p.D8N 0.24 deleterious(0.01) benign(0.112) TCGA-AC-A23H-01 X 64708808 64708808 G C ZC3H12B Missense_Mutation p.E43Q 0.21 deleterious_low_confidence(0.02) benign(0.282) TCGA-AC-A23H-01 X 64722249 64722249 C A ZC3H12B Silent p.I557I 0.26 TCGA-AC-A23H-01 X 64951772 64951772 C G MSN Missense_Mutation p.I208M 0.25 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 X 64958994 64958994 C T MSN Missense_Mutation p.R503C 0.50 deleterious(0.01) probably_damaging(0.953) TCGA-AC-A23H-01 X 69424872 69424872 C T DGAT2L6 Silent p.L310L 0.19 TCGA-AC-A23H-01 X 69573523 69573523 C T KIF4A Nonsense_Mutation p.Q514* 0.22 TCGA-AC-A23H-01 X 70325953 70325953 C T CXorf65 Missense_Mutation p.M49I 0.23 tolerated(0.07) possibly_damaging(0.491) TCGA-AC-A23H-01 X 70443811 70443811 C G GJB1 Missense_Mutation p.S85C 0.17 deleterious(0) probably_damaging(0.966) TCGA-AC-A23H-01 X 70683846 70683846 G A TAF1 Missense_Mutation p.E1878K 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AC-A23H-01 X 70764455 70764455 C G OGT Silent p.L167L 0.18 TCGA-AC-A23H-01 X 71351168 71351168 C A RGAG4 Nonsense_Mutation p.E75* 0.30 TCGA-AC-A23H-01 X 71684452 71684452 C T HDAC8 Silent p.K289K 0.28 TCGA-AC-A23H-01 X 71873282 71873282 C A PHKA1 Intron 0.28 TCGA-AC-A23H-01 X 73812248 73812248 G C RLIM Nonsense_Mutation p.S301* 0.48 TCGA-AC-A23H-01 X 75003459 75003459 G C MAGEE2 Missense_Mutation p.I476M 0.18 deleterious(0) benign(0.006) TCGA-AC-A23H-01 X 75394728 75394728 G C PBDC1 Missense_Mutation p.D34H 0.19 deleterious(0) probably_damaging(0.914) TCGA-AC-A23H-01 X 76931791 76931791 C G ATRX Missense_Mutation p.D1247H 0.29 possibly_damaging(0.627) TCGA-AC-A23H-01 X 76937411 76937411 C G ATRX Missense_Mutation p.E1113Q 0.19 probably_damaging(0.993) TCGA-AC-A23H-01 X 76937417 76937417 C G ATRX Missense_Mutation p.D1111H 0.20 probably_damaging(0.999) TCGA-AC-A23H-01 X 76937478 76937478 C G ATRX Missense_Mutation p.E1090D 0.28 benign(0.002) TCGA-AC-A23H-01 X 76937795 76937795 T A ATRX Missense_Mutation p.S985C 0.33 benign(0.371) TCGA-AC-A23H-01 X 76937796 76937796 C G ATRX Missense_Mutation p.Q984H 0.33 benign(0.002) TCGA-AC-A23H-01 X 76937838 76937838 C G ATRX Missense_Mutation p.K970N 0.31 benign(0.075) TCGA-AC-A23H-01 X 76938482 76938482 C T ATRX Missense_Mutation p.E756K 0.25 benign(0.16) TCGA-AC-A23H-01 X 76938534 76938534 G C ATRX Silent p.L738L 0.23 TCGA-AC-A23H-01 X 77378812 77378812 G C PGK1 Missense_Mutation p.D293H 0.23 deleterious(0.01) possibly_damaging(0.825) TCGA-AC-A23H-01 X 78622670 78622670 C T ITM2A Missense_Mutation p.E15K 0.32 tolerated(0.58) benign(0.031) TCGA-AC-A23H-01 X 79985496 79985496 C G BRWD3 Missense_Mutation p.R384P 0.25 deleterious(0) probably_damaging(0.964) TCGA-AC-A23H-01 X 83723725 83723725 C G HDX Missense_Mutation p.E336Q 0.19 tolerated(0.1) probably_damaging(0.937) TCGA-AC-A23H-01 X 8434325 8434325 G T VCX3B Silent p.L214L 0.22 TCGA-AC-A23H-01 X 85213944 85213944 G C CHM Missense_Mutation p.I247M 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A23H-01 X 85404026 85404026 G A DACH2 Silent p.L134L 0.17 TCGA-AC-A23H-01 X 85950093 85950093 G T DACH2 Missense_Mutation p.G281V 0.31 tolerated(0.05) possibly_damaging(0.77) TCGA-AC-A23H-01 X 88008976 88008976 C T CPXCR1 Silent p.F187F 0.23 TCGA-AC-A23H-01 X 91091032 91091032 G A PCDH11X Missense_Mutation p.E177K 0.31 tolerated(0.11) benign(0.023) TCGA-AC-A23H-01 X 92927781 92927781 C A NAP1L3 Nonsense_Mutation p.E175* 0.29 TCGA-AC-A23H-01 X 96139471 96139471 T G RPA4 Silent p.L54L 0.23 TCGA-AC-A23H-01 X 9864400 9864400 C G SHROOM2 Missense_Mutation p.L818V 0.28 tolerated(0.52) benign(0) TCGA-AC-A23H-01 X 9900476 9900476 G A SHROOM2 Silent p.V1051V 0.12 TCGA-AC-A23H-01 X 9900720 9900720 G C SHROOM2 Missense_Mutation p.E1133Q 0.27 tolerated(0.24) benign(0.188) TCGA-AC-A23H-01 X 9900768 9900768 G A SHROOM2 Missense_Mutation p.E1149K 0.29 tolerated(0.12) benign(0.227) TCGA-AC-A23H-01 X 9914783 9914783 G A SHROOM2 Missense_Mutation p.D1553N 0.23 deleterious(0) probably_damaging(0.994) TCGA-AC-A2B8-01 10 105037719 105037719 G C INA Missense_Mutation p.E251Q 0.27 tolerated(0.32) benign(0.283) TCGA-AC-A2B8-01 10 105372651 105372651 G C SH3PXD2A Missense_Mutation p.S378C 0.32 deleterious(0) probably_damaging(0.959) TCGA-AC-A2B8-01 10 12126636 12126636 A G DHTKD1 Silent p.Q136Q 0.16 TCGA-AC-A2B8-01 10 26359066 26359066 G A MYO3A Silent p.K399K 0.23 TCGA-AC-A2B8-01 10 50121646 50121646 C T LRRC18 Silent p.S185S 0.25 TCGA-AC-A2B8-01 10 55568927 55568927 G A PCDH15 Missense_Mutation p.S562L 0.39 deleterious_low_confidence(0) unknown(0) TCGA-AC-A2B8-01 11 18387585 18387585 G A GTF2H1 3'UTR 0.21 TCGA-AC-A2B8-01 11 18428760 18428760 G A LDHA Missense_Mutation p.E340K 0.25 tolerated(0.09) benign(0.019) TCGA-AC-A2B8-01 11 33054213 33054213 G C DEPDC7 Splice_Site p.X380_splice 0.22 TCGA-AC-A2B8-01 11 46772131 46772131 C T CKAP5 Missense_Mutation p.D1831N 0.33 tolerated(0.06) possibly_damaging(0.451) TCGA-AC-A2B8-01 11 5529104 5529104 C T UBQLN3 Missense_Mutation p.R562K 0.14 tolerated(0.69) benign(0.01) TCGA-AC-A2B8-01 11 59271954 59271954 G A OR4D11 Silent p.K302K 0.36 TCGA-AC-A2B8-01 11 6412070 6412070 G C SMPD1 Missense_Mutation p.R81P 0.17 tolerated(0.11) benign(0.346) TCGA-AC-A2B8-01 11 82876651 82876651 C G PCF11 Missense_Mutation p.L238V 0.41 tolerated(0.2) probably_damaging(0.909) TCGA-AC-A2B8-01 11 9750971 9750973 AAG - SWAP70 In_Frame_Del p.K294del 0.23 TCGA-AC-A2B8-01 12 123014620 123014620 G T KNTC1 Missense_Mutation p.D4Y 0.29 deleterious(0) possibly_damaging(0.671) TCGA-AC-A2B8-01 12 49251830 49251830 G A RND1 Silent p.L216L 0.38 TCGA-AC-A2B8-01 12 53200976 53200976 G A KRT4 Silent p.S480S 0.17 TCGA-AC-A2B8-01 12 57884133 57884133 G A MARS Missense_Mutation p.E212K 0.19 tolerated(0.78) benign(0.002) TCGA-AC-A2B8-01 12 57994735 57994735 C G PIP4K2C Missense_Mutation p.P319A 0.16 tolerated(0.3) benign(0.003) TCGA-AC-A2B8-01 12 6344725 6344725 C G CD9 Silent p.T177T 0.36 TCGA-AC-A2B8-01 12 63543856 63543856 C T AVPR1A Missense_Mutation p.R254H 0.19 tolerated(0.11) benign(0.022) TCGA-AC-A2B8-01 12 96641458 96641458 C T ELK3 Silent p.L316L 0.38 TCGA-AC-A2B8-01 13 20600816 20600817 AG - ZMYM2 Frame_Shift_Del p.Q550Lfs*5 0.25 TCGA-AC-A2B8-01 13 37618235 37618235 C T SUPT20H Missense_Mutation p.D126N 0.26 tolerated(0.09) possibly_damaging(0.893) TCGA-AC-A2B8-01 13 45554075 45554075 C G NUFIP1 Missense_Mutation p.D203H 0.17 deleterious(0.04) probably_damaging(0.991) TCGA-AC-A2B8-01 14 106791212 106791212 G A IGHV3-30 Silent p.F48F 0.08 TCGA-AC-A2B8-01 14 24684762 24684762 A G MDP1 Missense_Mutation p.S69P 0.28 deleterious(0) probably_damaging(1) TCGA-AC-A2B8-01 14 64520304 64520304 G A SYNE2 Missense_Mutation p.D3225N 0.22 possibly_damaging(0.479) TCGA-AC-A2B8-01 15 101971661 101971661 C T PCSK6 Missense_Mutation p.G173D 0.44 tolerated(0.11) benign(0.012) TCGA-AC-A2B8-01 15 35045503 35045503 C A GJD2 Missense_Mutation p.D48Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-AC-A2B8-01 15 43701882 43701882 C G TP53BP1 Missense_Mutation p.G1788A 0.25 deleterious(0) probably_damaging(0.996) TCGA-AC-A2B8-01 15 51857358 51857358 G C DMXL2 Silent p.L97L 0.19 TCGA-AC-A2B8-01 15 59808952 59808952 G C FAM81A Missense_Mutation p.E299Q 0.33 tolerated(0.44) benign(0.081) TCGA-AC-A2B8-01 15 85326050 85326050 G A ZNF592 Missense_Mutation p.M48I 0.54 tolerated(0.86) benign(0.001) TCGA-AC-A2B8-01 15 85383507 85383507 G A ALPK3 Missense_Mutation p.E535K 0.11 deleterious(0.02) possibly_damaging(0.836) TCGA-AC-A2B8-01 16 14234535 14234535 G C MKL2 Missense_Mutation p.Q24H 0.17 tolerated(0.11) benign(0.036) TCGA-AC-A2B8-01 16 2126577 2126577 G A TSC2 Missense_Mutation p.R943K 0.36 tolerated(0.09) benign(0.241) TCGA-AC-A2B8-01 16 68855998 68856000 CTG - CDH1 In_Frame_Del p.C603del 0.64 TCGA-AC-A2B8-01 17 33353466 33353466 G A RFFL Missense_Mutation p.S36F 0.32 deleterious(0) probably_damaging(0.999) TCGA-AC-A2B8-01 17 41955106 41955106 G A MPP2 3'UTR 0.31 TCGA-AC-A2B8-01 17 73888451 73888451 C T TRIM65 Missense_Mutation p.R214Q 0.33 tolerated(0.71) benign(0.003) TCGA-AC-A2B8-01 17 74734279 74734279 C G MFSD11 5'UTR 0.40 TCGA-AC-A2B8-01 18 42281646 42281646 G A SETBP1 Missense_Mutation p.R112Q 0.26 deleterious(0) probably_damaging(0.99) TCGA-AC-A2B8-01 18 72234494 72234494 C G CNDP1 Missense_Mutation p.I194M 0.18 deleterious(0.02) possibly_damaging(0.831) TCGA-AC-A2B8-01 19 15918842 15918842 C T OR10H1 Silent p.Q2Q 0.34 TCGA-AC-A2B8-01 19 35786323 35786323 C T MAG Silent p.L4L 0.20 TCGA-AC-A2B8-01 19 3743985 3743985 C G TJP3 Missense_Mutation p.A640G 0.22 deleterious(0) probably_damaging(0.92) TCGA-AC-A2B8-01 19 43268108 43268108 C G PSG8 Missense_Mutation p.E130D 0.18 tolerated(0.61) benign(0.116) TCGA-AC-A2B8-01 19 44500381 44500381 C G ZNF155 Missense_Mutation p.F135L 0.13 tolerated(0.37) benign(0.044) TCGA-AC-A2B8-01 19 46376355 46376355 C T FOXA3 3'UTR 0.19 TCGA-AC-A2B8-01 19 4702043 4702043 C G DPP9 Missense_Mutation p.R336S 0.40 deleterious(0.03) benign(0.026) TCGA-AC-A2B8-01 19 58578800 58578800 C T ZNF135 Silent p.H340H 0.26 TCGA-AC-A2B8-01 19 8923821 8923821 G A ZNF558 Silent p.L109L 0.22 TCGA-AC-A2B8-01 1 109338874 109338874 G C STXBP3 Missense_Mutation p.D377H 0.26 deleterious(0) probably_damaging(0.997) TCGA-AC-A2B8-01 1 144918872 144918872 G A PDE4DIP Silent p.H438H 0.11 TCGA-AC-A2B8-01 1 151147306 151147306 C A TMOD4 Nonsense_Mutation p.E16* 0.49 TCGA-AC-A2B8-01 1 152327368 152327368 C G FLG2 Missense_Mutation p.G965A 0.42 unknown(0) TCGA-AC-A2B8-01 1 152327430 152327430 C G FLG2 Missense_Mutation p.Q944H 0.38 unknown(0) TCGA-AC-A2B8-01 1 153346269 153346269 G C S100A12 3'UTR 0.13 TCGA-AC-A2B8-01 1 159410259 159410259 G C OR10J1 Missense_Mutation p.K237N 0.18 deleterious(0.01) benign(0.11) TCGA-AC-A2B8-01 1 205500482 205500482 G A CDK18 Silent p.K497K 0.11 TCGA-AC-A2B8-01 1 22835712 22835712 G A ZBTB40 Missense_Mutation p.E607K 0.23 tolerated(0.15) unknown(0) TCGA-AC-A2B8-01 1 229568794 229568794 G A ACTA1 Silent p.F23F 0.59 TCGA-AC-A2B8-01 1 23743835 23743835 G T TCEA3 Missense_Mutation p.A96E 0.21 tolerated(0.47) benign(0.003) TCGA-AC-A2B8-01 1 23743844 23743844 C G TCEA3 Missense_Mutation p.R93T 0.18 tolerated(0.21) benign(0.011) TCGA-AC-A2B8-01 1 238051766 238051766 G A ZP4 Missense_Mutation p.R149W 0.14 tolerated(0.16) benign(0) TCGA-AC-A2B8-01 1 38061433 38061433 G A GNL2 5'UTR 0.28 TCGA-AC-A2B8-01 1 54476002 54476002 C A LDLRAD1 Missense_Mutation p.C141F 0.20 deleterious(0) probably_damaging(0.997) TCGA-AC-A2B8-01 1 78546505 78546505 C T GIPC2 Silent p.L129L 0.27 TCGA-AC-A2B8-01 1 94652094 94652094 C T ARHGAP29 Missense_Mutation p.D581N 0.19 deleterious(0) probably_damaging(0.998) TCGA-AC-A2B8-01 20 271268 271268 G C C20orf96 5'UTR 0.42 TCGA-AC-A2B8-01 20 3090667 3090667 C T UBOX5 3'UTR 0.19 TCGA-AC-A2B8-01 20 35684594 35684594 G C RBL1 Missense_Mutation p.Q440E 0.37 tolerated(0.41) benign(0.023) TCGA-AC-A2B8-01 20 60903928 60903928 G A LAMA5 Silent p.T1473T 0.36 TCGA-AC-A2B8-01 21 10863019 10863019 G C IGHV1OR21-1 Silent p.L105L 0.08 TCGA-AC-A2B8-01 21 11039036 11039036 G C BAGE2 RNA 0.04 TCGA-AC-A2B8-01 22 16287336 16287336 C T POTEH Missense_Mutation p.A184T 0.09 deleterious(0.01) probably_damaging(1) TCGA-AC-A2B8-01 22 43564158 43564158 C T TTLL12 Silent p.R597R 0.21 TCGA-AC-A2B8-01 2 107049424 107049424 C A RGPD3 Silent p.L812L 0.23 TCGA-AC-A2B8-01 2 152466412 152466412 C A NEB Missense_Mutation p.D4081Y 0.20 probably_damaging(0.995) TCGA-AC-A2B8-01 2 179435608 179435608 C G TTN Missense_Mutation p.R25084P 0.33 TCGA-AC-A2B8-01 2 198267493 198267493 C G SF3B1 Missense_Mutation p.E622Q 0.34 deleterious(0) possibly_damaging(0.891) TCGA-AC-A2B8-01 2 230910840 230910840 G A SLC16A14 Silent p.F334F 0.22 TCGA-AC-A2B8-01 2 242402844 242402844 G A FARP2 Missense_Mutation p.R591K 0.15 tolerated(0.43) possibly_damaging(0.868) TCGA-AC-A2B8-01 2 74756697 74756697 G A HTRA2 5'UTR 0.40 TCGA-AC-A2B8-01 2 88425751 88425751 C T FABP1 Missense_Mutation p.E62K 0.22 tolerated(0.58) benign(0.043) TCGA-AC-A2B8-01 2 88425757 88425757 G A FABP1 Nonsense_Mutation p.Q60* 0.23 TCGA-AC-A2B8-01 2 97877403 97877403 C T ANKRD36 Intron 0.31 TCGA-AC-A2B8-01 3 113623050 113623050 C T GRAMD1C Silent p.I240I 0.28 TCGA-AC-A2B8-01 3 128755858 128755858 G C EFCC1 Silent p.L496L 0.28 TCGA-AC-A2B8-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.52 deleterious(0.02) probably_damaging(0.959) TCGA-AC-A2B8-01 3 196381410 196381410 G A NRROS 5'UTR 0.41 TCGA-AC-A2B8-01 3 52643679 52643679 A G PBRM1 Silent p.N739N 0.19 TCGA-AC-A2B8-01 4 141321646 141321646 C T CLGN Missense_Mutation p.E187K 0.30 tolerated(0.07) benign(0.34) TCGA-AC-A2B8-01 4 3216854 3216854 G A HTT Missense_Mutation p.E2324K 0.31 benign(0.028) TCGA-AC-A2B8-01 4 5803792 5803792 G C EVC Missense_Mutation p.R807T 0.22 deleterious(0.03) benign(0.248) TCGA-AC-A2B8-01 5 101631645 101631645 G A SLCO4C1 Silent p.L108L 0.17 TCGA-AC-A2B8-01 5 108714508 108714508 C T PJA2 Missense_Mutation p.R227K 0.13 tolerated(0.18) benign(0.008) TCGA-AC-A2B8-01 5 131598453 131598453 G C PDLIM4 Missense_Mutation p.R82T 0.14 deleterious(0) possibly_damaging(0.829) TCGA-AC-A2B8-01 5 140710703 140710703 G C PCDHGA1 Missense_Mutation p.R151T 0.29 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-AC-A2B8-01 5 156817670 156817670 G C CYFIP2 Missense_Mutation p.K1170N 0.26 tolerated(0.29) benign(0.03) TCGA-AC-A2B8-01 5 176666775 176666775 G A NSD1 Missense_Mutation p.R1404H 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A2B8-01 5 74489201 74489201 C A ANKRD31 Missense_Mutation p.K411N 0.21 tolerated(0.07) possibly_damaging(0.483) TCGA-AC-A2B8-01 6 136990511 136990511 C T MAP3K5 Missense_Mutation p.E426K 0.20 deleterious(0) probably_damaging(0.997) TCGA-AC-A2B8-01 6 147705918 147705918 C T STXBP5 3'Flank 0.19 TCGA-AC-A2B8-01 6 70897818 70897818 G A COL19A1 Missense_Mutation p.E966K 0.17 deleterious(0) probably_damaging(0.976) TCGA-AC-A2B8-01 7 142573303 142573303 C T TRPV6 Missense_Mutation p.C347Y 0.33 deleterious(0) probably_damaging(0.993) TCGA-AC-A2B8-01 7 1586000 1586000 C T TMEM184A 3'UTR 0.31 TCGA-AC-A2B8-01 7 2284345 2284345 G A NUDT1 Missense_Mutation p.E69K 0.27 tolerated(0.2) benign(0.029) TCGA-AC-A2B8-01 7 31003680 31003680 C T GHRHR 5'UTR 0.20 TCGA-AC-A2B8-01 7 37264564 37264564 C T ELMO1 Silent p.S207S 0.38 TCGA-AC-A2B8-01 7 66463173 66463173 C G TYW1 Missense_Mutation p.I42M 0.27 tolerated_low_confidence(0.2) benign(0.007) TCGA-AC-A2B8-01 7 74486513 74486513 C T WBSCR16 Nonsense_Mutation p.W132* 0.28 TCGA-AC-A2B8-01 7 89790576 89790576 C G STEAP1 Missense_Mutation p.S181C 0.23 tolerated(1) benign(0.132) TCGA-AC-A2B8-01 8 113662562 113662562 C T CSMD3 Silent p.T1007T 0.33 TCGA-AC-A2B8-01 8 30969302 30969302 C G WRN Missense_Mutation p.L754V 0.43 deleterious(0) probably_damaging(0.999) TCGA-AC-A2B8-01 8 48309073 48309073 G A SPIDR Silent p.E221E 0.19 TCGA-AC-A2B8-01 8 59404035 59404035 C T CYP7A1 Silent p.%3D 0.40 TCGA-AC-A2B8-01 8 92021021 92021021 C T TMEM55A Nonsense_Mutation p.W163* 0.15 TCGA-AC-A2B8-01 9 128003098 128003098 C T HSPA5 Missense_Mutation p.E71K 0.19 deleterious_low_confidence(0.03) benign(0.005) TCGA-AC-A2B8-01 9 95600000 95600000 G C ANKRD19P RNA 0.21 TCGA-AC-A2B8-01 X 101087162 101087162 G A NXF5 3'UTR 0.24 TCGA-AC-A2B8-01 X 12157064 12157064 C T FRMPD4 5'UTR 0.24 TCGA-AC-A2B8-01 X 123518123 123518123 C A TENM1 Missense_Mutation p.D2220Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-AC-A2B8-01 X 135475730 135475730 G C GPR112 Missense_Mutation p.E2691Q 0.23 tolerated(0.35) benign(0.18) TCGA-AC-A2B8-01 X 153628244 153628244 C G RPL10 Missense_Mutation p.I97M 0.19 deleterious(0.02) possibly_damaging(0.638) TCGA-AC-A2B8-01 X 1712627 1712627 C G AKAP17A Missense_Mutation p.S91C 0.45 tolerated(0.06) probably_damaging(0.921) TCGA-AC-A2B8-01 X 70350052 70350052 G A MED12 Silent p.K1345K 0.32 TCGA-AC-A2B8-01 X 79278589 79278589 C T TBX22 Missense_Mutation p.S69F 0.41 deleterious(0.04) benign(0.252) TCGA-AC-A2B8-01 X 84537175 84537175 C T POF1B Intron 0.25 TCGA-AC-A2BK-01 10 102045902 102045902 G A BLOC1S2 Missense_Mutation p.R42W 0.43 tolerated(0.07) benign(0.011) TCGA-AC-A2BK-01 10 129899951 129899951 G A MKI67 Silent p.R3092R 0.34 TCGA-AC-A2BK-01 10 61789162 61789162 C A ANK3 3'UTR 0.23 TCGA-AC-A2BK-01 10 860733 860733 G A LARP4B Silent p.S626S 0.50 TCGA-AC-A2BK-01 11 2337500 2337500 G A TSPAN32 Silent p.Q195Q 0.31 TCGA-AC-A2BK-01 11 47361303 47361303 G T MYBPC3 Missense_Mutation p.P656T 0.19 tolerated(0.14) benign(0.182) TCGA-AC-A2BK-01 11 5068440 5068440 C G OR52J3 Missense_Mutation p.L229V 0.83 deleterious(0) probably_damaging(0.999) TCGA-AC-A2BK-01 11 66192195 66192195 C - NPAS4 Frame_Shift_Del p.P612Lfs*21 0.54 TCGA-AC-A2BK-01 11 69063371 69063371 T A MYEOV Missense_Mutation p.S152T 0.79 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-AC-A2BK-01 12 11244640 11286654 12:11244640-11286654 - TAS2R43 large deletion 0.24 TCGA-AC-A2BK-01 12 2932053 2932053 G T ITFG2 Nonsense_Mutation p.E348* 0.26 TCGA-AC-A2BK-01 12 49425787 49425788 CT - KMT2D Frame_Shift_Del p.Q4235Gfs*98 0.53 TCGA-AC-A2BK-01 12 53809464 53809464 G C SP1 3'Flank 0.92 TCGA-AC-A2BK-01 12 7640645 7640645 A G CD163 Missense_Mutation p.C487R 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A2BK-01 13 39343763 39343763 G C FREM2 Missense_Mutation p.G1820A 0.79 deleterious(0.02) possibly_damaging(0.817) TCGA-AC-A2BK-01 13 52857417 52857417 G A RP11-248G5.8 RNA 0.29 TCGA-AC-A2BK-01 14 102502958 102502958 C A DYNC1H1 Missense_Mutation p.F3629L 0.25 probably_damaging(1) TCGA-AC-A2BK-01 14 24839410 24839410 G A NFATC4 Missense_Mutation p.R332Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-AC-A2BK-01 14 64675643 64675643 G A SYNE2 Missense_Mutation p.M6123I 0.53 probably_damaging(0.995) TCGA-AC-A2BK-01 14 75746765 75746765 T G FOS Silent p.A109A 0.60 TCGA-AC-A2BK-01 14 90429903 90429903 G T TDP1 Missense_Mutation p.G149W 0.50 deleterious(0.02) possibly_damaging(0.765) TCGA-AC-A2BK-01 14 94467524 94467524 T A LINC00521 RNA 0.89 TCGA-AC-A2BK-01 14 99640472 99640472 G A BCL11B 3'UTR 0.29 TCGA-AC-A2BK-01 15 42371728 42371745 GCCCTACCTGGCCGTGCA - PLA2G4D Splice_Site p.X436_splice 0.50 TCGA-AC-A2BK-01 15 59347900 59347900 C T RNF111 Missense_Mutation p.H343Y 0.74 deleterious(0.01) probably_damaging(0.95) TCGA-AC-A2BK-01 17 16827696 16827696 C G TBC1D27 Splice_Site 0.17 TCGA-AC-A2BK-01 17 39596721 39596721 G C KRT38 Nonsense_Mutation p.Y151* 0.30 TCGA-AC-A2BK-01 17 73089910 73089910 C - SLC16A5 Frame_Shift_Del p.T60Rfs*22 0.25 TCGA-AC-A2BK-01 17 7464224 7464224 A G TNFSF12-TNFSF13 3'UTR 0.20 TCGA-AC-A2BK-01 17 7578205 7578205 C A TP53 Missense_Mutation p.S215I 0.83 deleterious(0) probably_damaging(1) TCGA-AC-A2BK-01 17 76989832 76989832 C T CANT1 Missense_Mutation p.G336R 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A2BK-01 17 79479298 79479298 C A ACTG1 Missense_Mutation p.R28L 0.25 deleterious_low_confidence(0.01) benign(0.017) TCGA-AC-A2BK-01 18 19995512 19995512 A G CTAGE1 3'UTR 0.91 TCGA-AC-A2BK-01 18 72775958 72775958 C T ZNF407 Missense_Mutation p.A2094V 0.20 deleterious(0) benign(0.255) TCGA-AC-A2BK-01 18 77896057 77896057 G T ADNP2 Missense_Mutation p.V921F 0.36 deleterious(0.03) probably_damaging(1) TCGA-AC-A2BK-01 19 11658612 11658612 G T CNN1 Missense_Mutation p.A131S 0.21 deleterious(0.04) probably_damaging(0.99) TCGA-AC-A2BK-01 19 15471697 15471697 G A AKAP8 Missense_Mutation p.R497W 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A2BK-01 19 35613692 35613692 G C FXYD3 Missense_Mutation p.G98R 0.28 deleterious(0) probably_damaging(1) TCGA-AC-A2BK-01 19 36051279 36051279 G A ATP4A Missense_Mutation p.T258I 0.26 deleterious(0) probably_damaging(0.998) TCGA-AC-A2BK-01 19 38125951 38125951 C G ZFP30 Missense_Mutation p.K497N 0.25 tolerated(0.21) possibly_damaging(0.572) TCGA-AC-A2BK-01 19 42730398 42730398 C G ZNF526 Missense_Mutation p.P615A 0.25 tolerated_low_confidence(0.12) benign(0.079) TCGA-AC-A2BK-01 19 46521626 46521626 G A CCDC61 Missense_Mutation p.R507Q 0.48 tolerated(0.26) possibly_damaging(0.776) TCGA-AC-A2BK-01 19 50840271 50840271 C G NAPSB Intron 0.11 TCGA-AC-A2BK-01 19 6665222 6665222 C G TNFSF14 Missense_Mutation p.K146N 0.20 deleterious(0) probably_damaging(0.994) TCGA-AC-A2BK-01 19 8555068 8555068 C G PRAM1 3'UTR 0.09 TCGA-AC-A2BK-01 1 145827000 145827000 C - GPR89A 5'UTR 0.14 TCGA-AC-A2BK-01 1 152279593 152279593 T A FLG Missense_Mutation p.N2590I 0.08 possibly_damaging(0.802) TCGA-AC-A2BK-01 1 152281501 152281501 G A FLG Missense_Mutation p.S1954F 0.04 possibly_damaging(0.485) TCGA-AC-A2BK-01 1 154456753 154456753 G T SHE Missense_Mutation p.L454M 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A2BK-01 1 155917712 155917712 G A ARHGEF2 3'UTR 0.17 TCGA-AC-A2BK-01 1 160209785 160209785 G C DCAF8 Nonsense_Mutation p.S142* 0.07 TCGA-AC-A2BK-01 1 176668662 176668662 A G PAPPA2 Missense_Mutation p.D1058G 0.14 deleterious(0.02) benign(0.145) TCGA-AC-A2BK-01 1 186275883 186275906 CACCACTCCCAAGGAGCCCACGCC - PRG4 In_Frame_Del p.T351_P358del 0.13 TCGA-AC-A2BK-01 1 193060808 193060808 C A GLRX2 3'Flank 0.09 TCGA-AC-A2BK-01 1 19593722 19593722 C G AKR7L 3'UTR 0.56 TCGA-AC-A2BK-01 1 203696643 203696643 G T ATP2B4 Nonsense_Mutation p.E1085* 0.30 TCGA-AC-A2BK-01 1 208211768 208211768 G A PLXNA2 Missense_Mutation p.T1571I 0.99 deleterious(0) probably_damaging(0.998) TCGA-AC-A2BK-01 1 216677912 216677912 T G ESRRG 3'UTR 0.16 TCGA-AC-A2BK-01 1 223943238 223943238 G A CAPN2 Missense_Mutation p.E398K 0.29 tolerated(0.21) benign(0.012) TCGA-AC-A2BK-01 1 237947087 237947087 T C RYR2 Silent p.D4025D 0.13 TCGA-AC-A2BK-01 1 245530213 245530213 C G KIF26B Missense_Mutation p.D181E 0.15 tolerated(1) unknown(0) TCGA-AC-A2BK-01 1 248814106 248814106 A G OR2T27 Missense_Mutation p.L27P 0.11 deleterious(0) possibly_damaging(0.886) TCGA-AC-A2BK-01 1 47279654 47279654 T C CYP4B1 Missense_Mutation p.Y232H 0.60 tolerated(0.4) probably_damaging(0.999) TCGA-AC-A2BK-01 1 84348763 84348763 A C TTLL7 Missense_Mutation p.L809R 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-AC-A2BK-01 1 93159433 93159433 A T EVI5 Missense_Mutation p.H385Q 0.43 tolerated(0.19) benign(0.005) TCGA-AC-A2BK-01 20 14305761 14305761 T - FLRT3 3'UTR 0.48 TCGA-AC-A2BK-01 20 31019168 31019174 CCTGGGT - ASXL1 Frame_Shift_Del p.G256Ffs*10 0.22 TCGA-AC-A2BK-01 20 36361305 36361305 C T CTNNBL1 Missense_Mutation p.R19W 0.17 tolerated(0.07) possibly_damaging(0.642) TCGA-AC-A2BK-01 20 42163513 42163513 G A L3MBTL1 Missense_Mutation p.A564T 0.11 tolerated(0.19) benign(0.207) TCGA-AC-A2BK-01 20 4834023 4834023 C A SLC23A2 3'UTR 0.35 TCGA-AC-A2BK-01 20 60965195 60965195 C T CABLES2 3'UTR 0.32 TCGA-AC-A2BK-01 21 45970945 45970945 A T KRTAP10-2 Missense_Mutation p.S133T 0.45 tolerated(0.09) unknown(0) TCGA-AC-A2BK-01 22 50518441 50518441 T C MLC1 Missense_Mutation p.N110S 0.30 tolerated_low_confidence(0.26) benign(0.302) TCGA-AC-A2BK-01 2 113147065 113147065 G C RGPD8 Missense_Mutation p.P1153A 0.08 tolerated(0.13) benign(0.006) TCGA-AC-A2BK-01 2 120395842 120395842 A G PCDP1 Missense_Mutation p.N661S 0.19 tolerated(1) benign(0.004) TCGA-AC-A2BK-01 2 131520327 131520327 T - AMER3 Frame_Shift_Del p.F228Lfs*38 0.14 TCGA-AC-A2BK-01 2 149227568 149227568 G C MBD5 Missense_Mutation p.D686H 0.50 deleterious(0) probably_damaging(0.934) TCGA-AC-A2BK-01 2 154333893 154333894 - A RPRM 3'UTR 0.48 TCGA-AC-A2BK-01 2 179444796 179444796 A C TTN Silent p.T22406T 0.36 TCGA-AC-A2BK-01 2 220439596 220439596 C G INHA Missense_Mutation p.P150R 0.47 deleterious(0) possibly_damaging(0.873) TCGA-AC-A2BK-01 2 61024890 61024890 G T PAPOLG 3'UTR 0.23 TCGA-AC-A2BK-01 2 68388819 68388819 G C PNO1 Missense_Mutation p.C121S 0.54 tolerated(1) benign(0.024) TCGA-AC-A2BK-01 3 10276205 10276205 C T IRAK2 Silent p.G445G 0.88 TCGA-AC-A2BK-01 3 113380216 113380216 G A KIAA2018 Nonsense_Mutation p.R105* 0.20 TCGA-AC-A2BK-01 3 142985244 142985244 C T SLC9A9 3'UTR 0.44 TCGA-AC-A2BK-01 3 15469275 15469275 A T EAF1 5'UTR 0.42 TCGA-AC-A2BK-01 3 155200812 155200812 C A PLCH1 Silent p.G1009G 0.50 TCGA-AC-A2BK-01 3 182897392 182897395 TCTC CAT MCF2L2 Frame_Shift_Del p.G1064Dfs*122 0.54 TCGA-AC-A2BK-01 3 195460383 195460383 G T MUC20 3'UTR 0.13 TCGA-AC-A2BK-01 3 52550707 52550707 G A STAB1 Splice_Site p.X1429_splice 0.58 TCGA-AC-A2BK-01 3 93617363 93617363 G T PROS1 Missense_Mutation p.P260T 0.20 deleterious(0.02) possibly_damaging(0.641) TCGA-AC-A2BK-01 4 189020037 189020037 C A TRIML2 Intron 1.00 TCGA-AC-A2BK-01 4 75971513 75971513 C G PARM1 3'UTR 0.95 TCGA-AC-A2BK-01 5 148754154 148754154 G A IL17B Silent p.H107H 0.85 TCGA-AC-A2BK-01 6 30038965 30038965 G - RNF39 Frame_Shift_Del p.L396Wfs*74 0.27 TCGA-AC-A2BK-01 6 32118531 32118531 G A PRRT1 Missense_Mutation p.R58C 0.10 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-AC-A2BK-01 6 3324033 3324033 G A SLC22A23 Intron 0.19 TCGA-AC-A2BK-01 6 40313783 40313783 T C LINC00951 RNA 0.17 TCGA-AC-A2BK-01 6 41162310 41162310 G A TREML2 Missense_Mutation p.A213V 0.18 tolerated(1) benign(0.003) TCGA-AC-A2BK-01 6 52369477 52369477 G C TRAM2 Missense_Mutation p.H317Q 0.25 tolerated(0.07) benign(0.055) TCGA-AC-A2BK-01 6 64395494 64395494 A G PHF3 Missense_Mutation p.Q624R 0.50 deleterious(0) possibly_damaging(0.548) TCGA-AC-A2BK-01 6 90460198 90460198 A G MDN1 Missense_Mutation p.I1094T 0.07 probably_damaging(0.999) TCGA-AC-A2BK-01 7 106830713 106830713 C A HBP1 Missense_Mutation p.P340T 0.20 deleterious(0.03) probably_damaging(0.952) TCGA-AC-A2BK-01 7 122081617 122081617 G A CADPS2 Silent p.P767P 0.11 TCGA-AC-A2BK-01 7 137075931 137075931 C T DGKI 3'UTR 0.21 TCGA-AC-A2BK-01 7 138437430 138437430 G C ATP6V0A4 Silent p.A323A 0.16 TCGA-AC-A2BK-01 7 157985163 157985163 G A PTPRN2 Silent p.S135S 0.63 TCGA-AC-A2BK-01 7 1589818 1589818 C T TMEM184A Missense_Mutation p.G165S 0.37 tolerated(0.5) benign(0.322) TCGA-AC-A2BK-01 7 35280490 35280490 C A TBX20 Splice_Site p.X271_splice 0.45 TCGA-AC-A2BK-01 7 5567149 5567149 A - ACTB 3'UTR 0.44 TCGA-AC-A2BK-01 7 71036294 71036294 G A WBSCR17 Silent p.S329S 0.47 TCGA-AC-A2BK-01 7 87399954 87399954 C T RUNDC3B Silent p.S246S 0.21 TCGA-AC-A2BK-01 8 144873470 144873470 C T SCRIB Missense_Mutation p.E1611K 0.24 possibly_damaging(0.775) TCGA-AC-A2BK-01 8 23560355 23560355 G T NKX2-6 Missense_Mutation p.T172K 0.43 deleterious(0) probably_damaging(1) TCGA-AC-A2BK-01 8 74332341 74332341 G C STAU2 3'Flank 0.13 TCGA-AC-A2BK-01 8 81552518 81552518 T C ZNF704 3'UTR 0.24 TCGA-AC-A2BK-01 8 95718295 95718295 G T ESRP1 3'UTR 0.30 TCGA-AC-A2BK-01 9 115641997 115641997 G A SLC46A2 3'UTR 0.37 TCGA-AC-A2BK-01 9 138714560 138714560 A T CAMSAP1 Silent p.T649T 0.46 TCGA-AC-A2BK-01 9 37592556 37592556 C T TOMM5 5'UTR 0.45 TCGA-AC-A2BK-01 9 377122 377122 G A DOCK8 Missense_Mutation p.R784H 0.27 deleterious(0.02) possibly_damaging(0.72) TCGA-AC-A2BK-01 9 5335409 5335409 G A RLN1 Missense_Mutation p.R134C 0.08 tolerated(0.18) possibly_damaging(0.568) TCGA-AC-A2BK-01 9 990339 990339 G A DMRT3 Silent p.P251P 0.20 TCGA-AC-A2BK-01 X 38268240 38268240 C A OTC Silent p.R277R 0.89 TCGA-AC-A2BM-01 10 95406 95406 T C TUBB8 5'Flank 0.27 TCGA-AC-A2BM-01 15 22368626 22368626 A T OR4M2 Silent p.L17L 0.15 TCGA-AC-A2BM-01 16 2819194 2819194 T A SRRM2 Missense_Mutation p.S2644T 0.50 possibly_damaging(0.827) TCGA-AC-A2BM-01 16 29985591 29985591 C G TAOK2 5'UTR 0.34 TCGA-AC-A2BM-01 16 55886867 55886867 C T CES5A Missense_Mutation p.R429Q 0.28 tolerated(0.37) benign(0.438) TCGA-AC-A2BM-01 17 66270159 66270159 C T SLC16A6 Missense_Mutation p.M95I 0.15 tolerated(0.18) benign(0.014) TCGA-AC-A2BM-01 1 103364531 103364531 C T COL11A1 Missense_Mutation p.G1369D 0.09 unknown(0) TCGA-AC-A2BM-01 1 110032625 110032625 C A ATXN7L2 Missense_Mutation p.P371T 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A2BM-01 1 1115915 1115915 C T TTLL10 Missense_Mutation p.R187W 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A2BM-01 1 161143422 161143422 C T B4GALT3 Missense_Mutation p.G259D 0.32 deleterious(0.03) possibly_damaging(0.658) TCGA-AC-A2BM-01 1 176863705 176863705 G T ASTN1 Missense_Mutation p.T978N 0.21 deleterious(0) possibly_damaging(0.886) TCGA-AC-A2BM-01 1 223936765 223936765 G A CAPN2 Missense_Mutation p.A252T 0.33 tolerated(0.14) benign(0.041) TCGA-AC-A2BM-01 21 46306137 46306137 C T ITGB2 3'UTR 0.20 TCGA-AC-A2BM-01 21 9907576 9907576 C T TEKT4P2 RNA 0.18 TCGA-AC-A2BM-01 3 123033083 123033083 T G ADCY5 Missense_Mutation p.K814T 0.34 tolerated(0.13) benign(0.005) TCGA-AC-A2BM-01 3 40528939 40528939 A T ZNF619 Missense_Mutation p.E353V 0.33 deleterious(0) probably_damaging(0.961) TCGA-AC-A2BM-01 5 140682837 140682837 G A SLC25A2 Missense_Mutation p.A199V 0.13 deleterious(0.03) possibly_damaging(0.698) TCGA-AC-A2BM-01 6 17637763 17637763 A T NUP153 Silent p.T695T 0.24 TCGA-AC-A2BM-01 6 393127 393127 G A IRF4 5'UTR 0.23 TCGA-AC-A2BM-01 6 54191620 54191620 G A TINAG Missense_Mutation p.S177N 0.17 deleterious(0) possibly_damaging(0.511) TCGA-AC-A2BM-01 7 141884908 141884908 A T RP11-1220K2.2 Missense_Mutation p.D1319V 0.08 probably_damaging(0.983) TCGA-AC-A2BM-01 8 41368162 41368169 TACGTTCC - GOLGA7 3'UTR 0.34 TCGA-AC-A2BM-01 8 48849054 48849054 T G PRKDC Missense_Mutation p.K379N 0.65 benign(0.029) TCGA-AC-A2BM-01 9 87342736 87342736 G T NTRK2 Nonsense_Mutation p.E341* 0.30 TCGA-AC-A2BM-01 X 135961173 135961173 C A RBMX Intron 0.15 TCGA-AC-A2BM-01 X 136653041 136653041 C G ZIC3 3'UTR 0.09 TCGA-AC-A2BM-01 X 153633996 153633996 G A DNASE1L1 Intron 0.24 TCGA-AC-A2FB-01 10 52596055 52596055 C T A1CF Missense_Mutation p.G136E 0.12 deleterious(0) probably_damaging(1) TCGA-AC-A2FB-01 10 72026104 72026104 C T NPFFR1 Silent p.Q17Q 0.08 TCGA-AC-A2FB-01 10 92675332 92675332 T A ANKRD1 Missense_Mutation p.M273L 0.12 tolerated(1) benign(0.001) TCGA-AC-A2FB-01 16 68835718 68835718 G A CDH1 Nonsense_Mutation p.W103* 0.08 TCGA-AC-A2FB-01 17 37673738 37673738 C T CDK12 Silent p.I964I 0.06 TCGA-AC-A2FB-01 17 64173016 64173016 C T CEP112 Missense_Mutation p.G77S 0.09 tolerated(0.09) probably_damaging(0.921) TCGA-AC-A2FB-01 19 52869117 52869117 A G ZNF610 Silent p.S162S 0.08 TCGA-AC-A2FB-01 1 158613125 158613125 G A SPTA1 Missense_Mutation p.R1477C 0.07 deleterious(0) probably_damaging(0.912) TCGA-AC-A2FB-01 1 167404660 167404660 C T CD247 Silent p.K104K 0.14 TCGA-AC-A2FB-01 1 31188965 31188965 T C MATN1 Missense_Mutation p.H333R 0.08 tolerated(0.41) benign(0.002) TCGA-AC-A2FB-01 21 36259142 36259142 T A RUNX1 Nonsense_Mutation p.K117* 0.33 TCGA-AC-A2FB-01 2 60687466 60687466 G T BCL11A 3'UTR 0.29 TCGA-AC-A2FB-01 3 31871579 31871579 G A OSBPL10 Nonsense_Mutation p.R228* 0.18 TCGA-AC-A2FB-01 4 148441015 148441015 C T EDNRA Missense_Mutation p.R145C 0.09 deleterious(0.01) possibly_damaging(0.713) TCGA-AC-A2FB-01 4 947114 947114 C G TMEM175 Missense_Mutation p.A200G 0.15 tolerated(0.4) benign(0.049) TCGA-AC-A2FB-01 5 180326355 180326355 A G BTNL8 Silent p.G15G 0.08 TCGA-AC-A2FB-01 X 147088232 147088232 G A FMR1NB Silent p.L136L 0.06 TCGA-AC-A2FF-01 10 89711975 89711975 T A PTEN Missense_Mutation p.M198K 0.16 deleterious(0) benign(0.233) TCGA-AC-A2FF-01 11 134119748 134119748 C G THYN1 Missense_Mutation p.E120Q 0.08 tolerated(0.28) benign(0.009) TCGA-AC-A2FF-01 13 96665687 96665690 TTTG - UGGT2 Frame_Shift_Del p.N177Kfs*7 0.27 TCGA-AC-A2FF-01 16 68835665 68835666 AA - CDH1 Frame_Shift_Del p.R87Afs*6 0.14 TCGA-AC-A2FF-01 19 44570584 44570584 G C ZNF223 Missense_Mutation p.E201D 0.13 deleterious(0.01) benign(0.025) TCGA-AC-A2FF-01 1 174927083 174927083 G A RABGAP1L 3'UTR 0.06 TCGA-AC-A2FF-01 1 237666765 237666765 C T RYR2 Missense_Mutation p.T858M 0.12 benign(0.391) TCGA-AC-A2FF-01 1 243716076 243716076 G C AKT3 Missense_Mutation p.A373G 0.12 tolerated(0.09) possibly_damaging(0.903) TCGA-AC-A2FF-01 3 178921566 178921566 G A PIK3CA Missense_Mutation p.D350N 0.10 tolerated(0.05) possibly_damaging(0.688) TCGA-AC-A2FF-01 3 49095071 49095071 C T QRICH1 Missense_Mutation p.E188K 0.12 tolerated_low_confidence(0.11) benign(0.095) TCGA-AC-A2FF-01 3 49095083 49095083 C T QRICH1 Missense_Mutation p.E184K 0.11 deleterious_low_confidence(0.02) benign(0.092) TCGA-AC-A2FF-01 5 56176593 56176594 - GA MAP3K1 Frame_Shift_Ins p.L717Sfs*9 0.26 TCGA-AC-A2FF-01 6 146720188 146720188 C A GRM1 Nonsense_Mutation p.C671* 0.11 TCGA-AC-A2FF-01 X 104512139 104512139 T C IL1RAPL2 Silent p.V204V 0.07 TCGA-AC-A2FG-01 10 124273799 124273799 G T HTRA1 Missense_Mutation p.S456I 0.23 deleterious(0.03) benign(0.392) TCGA-AC-A2FG-01 10 45956741 45956741 G A MARCH8 Missense_Mutation p.R121C 0.20 deleterious(0) probably_damaging(0.985) TCGA-AC-A2FG-01 10 88469670 88469670 C T LDB3 Missense_Mutation p.A370V 0.33 tolerated(0.39) benign(0.094) TCGA-AC-A2FG-01 10 93870935 93870935 C A CPEB3 Silent p.L490L 0.22 TCGA-AC-A2FG-01 12 102589977 102589977 A G PARPBP Missense_Mutation p.K550E 0.36 deleterious(0.03) benign(0.014) TCGA-AC-A2FG-01 12 2794920 2794920 C T CACNA1C Silent p.D1912D 0.20 TCGA-AC-A2FG-01 12 406343 406343 A G KDM5A Silent p.S1366S 0.17 TCGA-AC-A2FG-01 12 49233677 49233677 G C DDX23 Missense_Mutation p.L144V 0.38 tolerated(0.28) benign(0.225) TCGA-AC-A2FG-01 12 85695306 85695306 T C ALX1 3'UTR 0.35 TCGA-AC-A2FG-01 14 24030620 24030620 C T AP1G2 Silent p.L626L 0.19 TCGA-AC-A2FG-01 15 44673139 44673139 A G CASC4 Missense_Mutation p.K346R 0.23 tolerated(0.17) benign(0.019) TCGA-AC-A2FG-01 16 4944581 4944581 C T PPL Silent p.K427K 0.30 TCGA-AC-A2FG-01 16 68842661 68842662 - C CDH1 Frame_Shift_Ins p.V202Cfs*7 0.29 TCGA-AC-A2FG-01 17 39623127 39623127 C T KRT32 Missense_Mutation p.E151K 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-AC-A2FG-01 19 1073548 1073548 C T HMHA1 Silent p.F219F 0.32 TCGA-AC-A2FG-01 19 17571713 17571713 G A NXNL1 5'UTR 0.42 TCGA-AC-A2FG-01 19 43372959 43372959 G A PSG1 Missense_Mutation p.R313W 0.19 tolerated(0.23) benign(0.022) TCGA-AC-A2FG-01 19 53644868 53644868 C G ZNF347 Missense_Mutation p.E406Q 0.20 deleterious(0.01) benign(0.255) TCGA-AC-A2FG-01 1 160183048 160183048 G A PEA15 Silent p.K107K 0.29 TCGA-AC-A2FG-01 1 16889316 16889316 G A NBPF1 3'UTR 0.33 TCGA-AC-A2FG-01 1 220364510 220364510 G C RAB3GAP2 Missense_Mutation p.Q463E 0.16 deleterious(0.02) possibly_damaging(0.885) TCGA-AC-A2FG-01 1 43908673 43908673 G A SZT2 Missense_Mutation p.V2722I 0.35 tolerated(0.47) benign(0) TCGA-AC-A2FG-01 1 82409249 82409249 G A LPHN2 Missense_Mutation p.E332K 0.26 deleterious(0.01) possibly_damaging(0.804) TCGA-AC-A2FG-01 2 102445999 102445999 C T MAP4K4 Missense_Mutation p.H151Y 0.21 deleterious_low_confidence(0) unknown(0) TCGA-AC-A2FG-01 2 143798193 143798193 A T KYNU Missense_Mutation p.D413V 0.24 tolerated(0.32) benign(0) TCGA-AC-A2FG-01 2 175979570 175979570 C G ATF2 Missense_Mutation p.Q158H 0.24 tolerated(0.16) benign(0.078) TCGA-AC-A2FG-01 2 179499546 179499546 G A TTN Missense_Mutation p.R14019C 0.27 TCGA-AC-A2FG-01 2 1907062 1907062 T A MYT1L Missense_Mutation p.M606L 0.19 tolerated(0.07) benign(0.373) TCGA-AC-A2FG-01 2 228882171 228882171 C T SPHKAP Missense_Mutation p.M1133I 0.47 deleterious(0) probably_damaging(0.998) TCGA-AC-A2FG-01 2 231081574 231081574 G A SP110 Silent p.I23I 0.30 TCGA-AC-A2FG-01 5 140201501 140201501 C T PCDHA5 Silent p.I47I 0.25 TCGA-AC-A2FG-01 5 167857146 167857146 G A WWC1 Missense_Mutation p.D669N 0.42 tolerated(0.06) probably_damaging(0.972) TCGA-AC-A2FG-01 6 111686492 111686492 T A REV3L Missense_Mutation p.R2243S 0.20 deleterious(0) benign(0.347) TCGA-AC-A2FG-01 6 34100808 34100808 C T GRM4 Missense_Mutation p.A156T 0.35 deleterious(0) probably_damaging(0.999) TCGA-AC-A2FG-01 7 100349667 100349667 C A ZAN Missense_Mutation p.P647T 0.23 benign(0.013) TCGA-AC-A2FG-01 7 38431520 38431520 G A AMPH Silent p.T569T 0.26 TCGA-AC-A2FG-01 7 99690458 99690458 G A MCM7 3'UTR 0.29 TCGA-AC-A2FG-01 9 86482724 86482724 T A KIF27 Missense_Mutation p.N937Y 0.25 deleterious(0.02) benign(0.006) TCGA-AC-A2FG-01 X 129149946 129149946 C T BCORL1 Silent p.F1066F 0.25 TCGA-AC-A2FG-01 X 130416574 130416574 G - IGSF1 Frame_Shift_Del p.Q364Nfs*19 0.37 TCGA-AC-A2FG-01 X 41025394 41025401 GAAAACTA - USP9X Frame_Shift_Del p.K753Sfs*10 0.32 TCGA-AC-A2FG-01 X 75648642 75648642 A G MAGEE1 Missense_Mutation p.T107A 0.20 tolerated_low_confidence(0.14) benign(0.054) TCGA-AC-A2FK-01 19 38858779 38858779 T A CATSPERG Splice_Site p.X1007_splice 0.04 TCGA-AC-A2FK-01 19 55378141 55378141 C T KIR3DL2 Silent p.V441V 0.03 TCGA-AC-A2FK-01 8 86572825 86572825 T C REXO1L1P 3'UTR 0.18 TCGA-AC-A2FO-01 10 97772336 97772336 G C CC2D2B Missense_Mutation p.K56N 0.12 tolerated(0.28) benign(0.009) TCGA-AC-A2FO-01 11 10011089 10011089 C G SBF2 Missense_Mutation p.K450N 0.13 tolerated(0.08) benign(0.052) TCGA-AC-A2FO-01 11 14535994 14535994 C T PSMA1 Missense_Mutation p.D106N 0.22 tolerated(0.6) benign(0.002) TCGA-AC-A2FO-01 11 65632261 65632261 C T MUS81 Missense_Mutation p.T416M 0.22 deleterious(0) probably_damaging(0.993) TCGA-AC-A2FO-01 11 82917205 82917205 C T ANKRD42 Nonsense_Mutation p.Q82* 0.07 TCGA-AC-A2FO-01 12 104458502 104458502 G A HCFC2 Splice_Site p.X55_splice 0.31 TCGA-AC-A2FO-01 14 35242895 35242895 C G BAZ1A Missense_Mutation p.S1012T 0.13 tolerated(0.11) benign(0.007) TCGA-AC-A2FO-01 15 30491484 30491484 A T AC026150.5 RNA 0.12 TCGA-AC-A2FO-01 15 38793432 38793432 A G RASGRP1 Missense_Mutation p.I532T 0.07 deleterious(0.01) probably_damaging(0.96) TCGA-AC-A2FO-01 16 2314298 2314298 C A RNPS1 Missense_Mutation p.D36Y 0.12 deleterious_low_confidence(0) unknown(0) TCGA-AC-A2FO-01 16 31191520 31191523 GCGC - FUS 5'UTR 0.29 TCGA-AC-A2FO-01 16 68867222 68867223 - G CDH1 Frame_Shift_Ins p.A824Gfs*5 0.30 TCGA-AC-A2FO-01 17 11726261 11726261 G C DNAH9 Missense_Mutation p.Q3052H 0.20 possibly_damaging(0.895) TCGA-AC-A2FO-01 1 27268243 27268243 G A NUDC Splice_Site p.X122_splice 0.17 TCGA-AC-A2FO-01 21 43223022 43223023 - T PRDM15 Frame_Shift_Ins p.R1298Afs*57 0.25 TCGA-AC-A2FO-01 22 38333086 38333086 G A MICALL1 Splice_Site p.X770_splice 0.17 TCGA-AC-A2FO-01 2 130900651 130900651 G A CCDC74B Intron 0.33 TCGA-AC-A2FO-01 2 187608252 187608252 C G FAM171B Missense_Mutation p.A172G 0.17 tolerated(0.49) probably_damaging(0.999) TCGA-AC-A2FO-01 2 210881290 210881290 G A RPE Silent p.Q134Q 0.18 TCGA-AC-A2FO-01 2 29295823 29295823 G A C2orf71 Silent p.L435L 0.21 TCGA-AC-A2FO-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-AC-A2FO-01 4 74702578 74702578 T G CXCL6 Splice_Site p.X37_splice 0.14 TCGA-AC-A2FO-01 5 140180891 140180891 G A PCDHA3 Missense_Mutation p.E37K 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A2FO-01 5 151771792 151771792 G T NMUR2 Nonsense_Mutation p.S403* 0.18 TCGA-AC-A2FO-01 5 26902657 26902657 T A CDH9 Missense_Mutation p.E394V 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A2FO-01 6 137019707 137019707 G A MAP3K5 Silent p.F242F 0.23 TCGA-AC-A2FO-01 6 31922433 31922433 C T NELFE Missense_Mutation p.R214K 0.11 tolerated(0.28) unknown(0) TCGA-AC-A2FO-01 7 129064781 129064781 C T AHCYL2 Nonsense_Mutation p.Q543* 0.18 TCGA-AC-A2FO-01 8 22138927 22138927 G A PIWIL2 Silent p.L108L 0.07 TCGA-AC-A2FO-01 X 11139831 11139831 G A HCCS Silent p.K236K 0.04 TCGA-AC-A2QH-01 10 104679434 104679434 C T CNNM2 Silent p.C399C 0.39 TCGA-AC-A2QH-01 10 64957271 64957271 T G JMJD1C Silent p.A1848A 0.19 TCGA-AC-A2QH-01 10 70679674 70679676 TAT - DDX50 In_Frame_Del p.I394del 0.20 TCGA-AC-A2QH-01 12 104332121 104332121 G T HSP90B1 Nonsense_Mutation p.E287* 0.18 TCGA-AC-A2QH-01 12 16050834 16050834 C A STRAP Silent p.S219S 0.47 TCGA-AC-A2QH-01 12 27841969 27841969 G A PPFIBP1 Missense_Mutation p.V846I 0.38 deleterious(0.04) probably_damaging(0.919) TCGA-AC-A2QH-01 12 49434789 49434789 A T KMT2D Nonsense_Mutation p.L2255* 0.49 TCGA-AC-A2QH-01 14 21052053 21052053 A G RNASE11 Missense_Mutation p.V194A 0.39 deleterious(0) probably_damaging(0.998) TCGA-AC-A2QH-01 16 21636435 21636435 C T METTL9 Silent p.N250N 0.52 TCGA-AC-A2QH-01 17 61988159 61988159 C T CSHL1 Missense_Mutation p.A46T 0.16 deleterious(0.01) benign(0.006) TCGA-AC-A2QH-01 17 7577097 7577097 C A TP53 Missense_Mutation p.D281Y 0.94 deleterious(0) probably_damaging(0.999) TCGA-AC-A2QH-01 18 21119843 21119843 G A NPC1 Silent p.C909C 0.30 TCGA-AC-A2QH-01 19 48715046 48715046 A T CARD8 Missense_Mutation p.L512Q 0.24 tolerated(0.64) benign(0.003) TCGA-AC-A2QH-01 19 9730110 9730110 C T ZNF561 Missense_Mutation p.R8H 0.23 tolerated(1) benign(0) TCGA-AC-A2QH-01 1 185259897 185259898 AG - SWT1 Frame_Shift_Del p.R889Gfs*4 0.37 TCGA-AC-A2QH-01 20 37195849 37195852 ACAG - RALGAPB Frame_Shift_Del p.D1311Ifs*14 0.51 TCGA-AC-A2QH-01 22 24621545 24621545 G A GGT5 Silent p.C435C 0.37 TCGA-AC-A2QH-01 22 31655161 31655161 G A LIMK2 Missense_Mutation p.V82M 0.30 tolerated(0.16) possibly_damaging(0.472) TCGA-AC-A2QH-01 2 166532860 166532860 C T CSRNP3 Silent p.S149S 0.46 TCGA-AC-A2QH-01 2 171376010 171376010 C G MYO3B Missense_Mutation p.Q1179E 0.27 tolerated_low_confidence(0.81) benign(0) TCGA-AC-A2QH-01 3 24006472 24006472 G A NR1D2 Missense_Mutation p.C384Y 0.10 deleterious(0) possibly_damaging(0.885) TCGA-AC-A2QH-01 3 9781112 9781113 AG - BRPF1 Frame_Shift_Del p.D344* 0.50 TCGA-AC-A2QH-01 4 1235308 1235308 C A CTBP1 Intron 0.62 TCGA-AC-A2QH-01 5 131911476 131911478 AAG - RAD50 In_Frame_Del p.E75del 0.60 TCGA-AC-A2QH-01 5 140203034 140203034 C T PCDHA5 Silent p.N558N 0.50 TCGA-AC-A2QH-01 5 53839291 53839291 C T SNX18 3'UTR 0.62 TCGA-AC-A2QH-01 6 42906404 42906404 G A CNPY3 Missense_Mutation p.G238S 0.28 tolerated(0.36) benign(0) TCGA-AC-A2QH-01 7 100773701 100773701 G C SERPINE1 Splice_Site p.X91_splice 0.82 TCGA-AC-A2QH-01 7 43436434 43436434 G A HECW1 Missense_Mutation p.D193N 0.14 tolerated(0.12) benign(0.06) TCGA-AC-A2QH-01 7 97833398 97833398 C G LMTK2 Missense_Mutation p.S1461R 0.24 deleterious(0.01) possibly_damaging(0.835) TCGA-AC-A2QH-01 9 39085796 39085796 C T CNTNAP3 Missense_Mutation p.V1127I 0.33 tolerated(0.06) benign(0.119) TCGA-AC-A2QH-01 X 134680717 134680717 C T DDX26B Missense_Mutation p.R174C 0.59 deleterious(0) probably_damaging(0.995) TCGA-AC-A2QH-01 X 153993226 153993228 AGA - DKC1 In_Frame_Del p.E25del 0.31 TCGA-AC-A3HN-01 10 101835810 101835810 C T CPN1 Missense_Mutation p.R93H 0.30 deleterious(0) probably_damaging(1) TCGA-AC-A3HN-01 10 55973752 55973752 T C PCDH15 Missense_Mutation p.S348G 0.11 tolerated(0.15) benign(0.098) TCGA-AC-A3HN-01 11 111368756 111368756 G C BTG4 Missense_Mutation p.T93S 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-AC-A3HN-01 11 299396 299396 G A IFITM5 Missense_Mutation p.P32L 0.17 tolerated(0.41) benign(0.01) TCGA-AC-A3HN-01 12 130648819 130648819 C T FZD10 Silent p.I444I 0.22 TCGA-AC-A3HN-01 12 133252323 133252323 G A POLE Silent p.D368D 0.29 TCGA-AC-A3HN-01 12 70352300 70352300 C T MYRFL Missense_Mutation p.R248C 0.23 deleterious(0) possibly_damaging(0.736) TCGA-AC-A3HN-01 15 75673022 75673022 T C SIN3A Missense_Mutation p.T1111A 0.19 tolerated(1) benign(0.001) TCGA-AC-A3HN-01 17 40761332 40761332 G A FAM134C Missense_Mutation p.A4V 0.21 tolerated_low_confidence(0.47) benign(0.002) TCGA-AC-A3HN-01 17 74392306 74392306 G A UBE2O Silent p.S904S 0.23 TCGA-AC-A3HN-01 17 74731986 74731986 A T SRSF2 3'UTR 0.20 TCGA-AC-A3HN-01 18 51681477 51681477 T C MBD2 3'UTR 0.23 TCGA-AC-A3HN-01 19 9868562 9868562 T A ZNF846 Missense_Mutation p.K397N 0.18 tolerated(0.1) possibly_damaging(0.575) TCGA-AC-A3HN-01 1 161137204 161137204 G A PPOX Missense_Mutation p.G89E 0.11 tolerated(0.27) possibly_damaging(0.893) TCGA-AC-A3HN-01 1 2407932 2407932 G T PLCH2 Intron 0.21 TCGA-AC-A3HN-01 1 53393007 53393007 C G SCP2 5'UTR 0.21 TCGA-AC-A3HN-01 5 140793054 140793054 G A PCDHGA10 Silent p.A104A 0.34 TCGA-AC-A3HN-01 5 67591104 67591105 - TAAACCAGACCTTATCCA PIK3R1 In_Frame_Ins p.I571_Q572insHKPDLI 0.17 TCGA-AC-A3HN-01 6 112394011 112394011 G A TUBE1 Silent p.L348L 0.28 TCGA-AC-A3HN-01 7 76256103 76256103 G T POMZP3 5'UTR 0.14 TCGA-AC-A3HN-01 9 27548294 27548294 A G C9orf72 Silent p.F462F 0.26 TCGA-AC-A3HN-01 X 118215342 118215342 C A KIAA1210 Missense_Mutation p.A1694S 0.15 deleterious(0) probably_damaging(0.992) TCGA-AC-A3HN-01 X 71428269 71428269 T G ERCC6L Missense_Mutation p.K116N 0.11 deleterious(0.01) possibly_damaging(0.827) TCGA-AC-A3OD-01 10 101950666 101950667 AT - CHUK Frame_Shift_Del p.I723Yfs*3 0.17 TCGA-AC-A3OD-01 10 33103363 33103363 C T C10ORF68 Nonsense_Mutation p.R326* 0.12 TCGA-AC-A3OD-01 10 88423491 88423491 G A OPN4 Missense_Mutation p.G455S 0.20 tolerated(0.6) benign(0.034) TCGA-AC-A3OD-01 11 10624667 10624667 C A MRVI1 Missense_Mutation p.Q625H 0.15 deleterious(0.02) probably_damaging(1) TCGA-AC-A3OD-01 11 126134965 126134965 A G SRPR Silent p.L472L 0.24 TCGA-AC-A3OD-01 11 64534547 64534547 C T SF1 Missense_Mutation p.M594I 0.12 tolerated_low_confidence(0.12) unknown(0) TCGA-AC-A3OD-01 11 67399312 67399312 G A TBX10 Nonsense_Mutation p.Q308* 0.26 TCGA-AC-A3OD-01 11 68312338 68312338 C T PPP6R3 Missense_Mutation p.S87F 0.20 deleterious(0) benign(0.047) TCGA-AC-A3OD-01 12 67829 67829 A T RP11-598F7.1 RNA 0.10 TCGA-AC-A3OD-01 16 29680465 29680466 - A SPN 3'UTR 0.15 TCGA-AC-A3OD-01 16 30774485 30774485 C G RNF40 Missense_Mutation p.A60G 0.15 tolerated(0.2) benign(0.033) TCGA-AC-A3OD-01 16 68856113 68856113 C T CDH1 Nonsense_Mutation p.Q641* 0.30 TCGA-AC-A3OD-01 16 70871687 70871687 C T HYDIN Missense_Mutation p.R4383Q 0.23 possibly_damaging(0.776) TCGA-AC-A3OD-01 17 21825380 21825380 G A FAM27L RNA 0.20 TCGA-AC-A3OD-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.24 TCGA-AC-A3OD-01 19 13049453 13049453 C T CALR 5'UTR 0.17 TCGA-AC-A3OD-01 19 39214326 39214326 C T ACTN4 Silent p.L505L 0.21 TCGA-AC-A3OD-01 19 39591969 39591969 C T PAPL Nonsense_Mutation p.R339* 0.11 TCGA-AC-A3OD-01 19 47969528 47969528 C T SLC8A2 Missense_Mutation p.G45R 0.31 tolerated(0.05) possibly_damaging(0.741) TCGA-AC-A3OD-01 1 113246297 113246297 T C RHOC Missense_Mutation p.Y42C 0.23 deleterious(0.02) possibly_damaging(0.748) TCGA-AC-A3OD-01 2 11053040 11053040 G A KCNF1 Missense_Mutation p.R163H 0.25 deleterious(0.05) possibly_damaging(0.755) TCGA-AC-A3OD-01 2 122098446 122098446 C T CLASP1 Silent p.T1536T 0.23 TCGA-AC-A3OD-01 2 187703893 187703893 G T ZSWIM2 Missense_Mutation p.A96D 0.20 deleterious(0) probably_damaging(0.995) TCGA-AC-A3OD-01 2 27440287 27440287 C T CAD 5'UTR 0.16 TCGA-AC-A3OD-01 3 157161369 157161369 A G PTX3 3'UTR 0.09 TCGA-AC-A3OD-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-AC-A3OD-01 3 52581911 52581911 T C PBRM1 3'UTR 0.22 TCGA-AC-A3OD-01 3 63821996 63821996 C T THOC7 Missense_Mutation p.D131N 0.25 deleterious(0) probably_damaging(0.997) TCGA-AC-A3OD-01 4 85704187 85704187 A G WDFY3 Missense_Mutation p.L1368S 0.06 deleterious(0) possibly_damaging(0.646) TCGA-AC-A3OD-01 5 140027173 140027173 G A NDUFA2 5'UTR 0.20 TCGA-AC-A3OD-01 5 140555950 140555950 G A PCDHB7 3'UTR 0.13 TCGA-AC-A3OD-01 5 14509257 14509257 C T TRIO 3'UTR 0.14 TCGA-AC-A3OD-01 6 155450781 155450781 G A TIAM2 Missense_Mutation p.G142R 0.21 deleterious_low_confidence(0.05) benign(0.035) TCGA-AC-A3OD-01 6 32846973 32846973 G T PPP1R2P1 3'Flank 0.25 TCGA-AC-A3OD-01 6 401620 401620 C T IRF4 Silent p.G314G 0.19 TCGA-AC-A3OD-01 8 22106709 22106709 C G POLR3D Missense_Mutation p.Q270E 0.17 deleterious(0) probably_damaging(0.999) TCGA-AC-A3OD-01 9 114154040 114154040 C A KIAA0368 Missense_Mutation p.D1231Y 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-AC-A3OD-01 X 150890386 150890386 C T FATE1 Missense_Mutation p.T118I 0.17 tolerated(0.35) benign(0.006) TCGA-AC-A3OD-01 X 35821240 35821240 T G MAGEB16 Nonsense_Mutation p.Y309* 0.13 TCGA-AC-A3OD-01 X 47442869 47442869 G A TIMP1 Missense_Mutation p.A19T 0.20 tolerated(0.61) benign(0.002) TCGA-AC-A3OD-01 X 91133748 91133748 C T PCDH11X Missense_Mutation p.R837C 0.20 tolerated(0.11) benign(0.022) TCGA-AC-A3QP-01 10 112650361 112650361 G C PDCD4 Missense_Mutation p.G308A 0.15 tolerated(0.07) benign(0.012) TCGA-AC-A3QP-01 10 134942831 134942831 C T GPR123 Missense_Mutation p.P500L 0.29 tolerated(0.26) benign(0.007) TCGA-AC-A3QP-01 10 30736871 30736871 G T MAP3K8 Missense_Mutation p.C166F 0.19 deleterious(0) probably_damaging(0.995) TCGA-AC-A3QP-01 10 64913409 64913409 C G NRBF2 Missense_Mutation p.Q99E 0.20 tolerated(0.07) benign(0.283) TCGA-AC-A3QP-01 11 48267471 48267471 G A OR4X2 Silent p.A272A 0.34 TCGA-AC-A3QP-01 11 56237368 56237368 G T OR5M3 Silent p.G202G 0.22 TCGA-AC-A3QP-01 11 65978677 65978677 C T PACS1 Missense_Mutation p.R203W 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A3QP-01 12 11338712 11338712 A G TAS2R42 Missense_Mutation p.S278P 0.29 deleterious(0) probably_damaging(0.997) TCGA-AC-A3QP-01 12 18435178 18435178 G T PIK3C2G Nonsense_Mutation p.E55* 0.32 TCGA-AC-A3QP-01 12 22678546 22678546 C A C2CD5 Missense_Mutation p.C148F 0.32 tolerated(0.62) benign(0.067) TCGA-AC-A3QP-01 12 40643748 40643748 G A LRRK2 Splice_Site p.X320_splice 0.26 TCGA-AC-A3QP-01 12 91539736 91539736 C A DCN 3'UTR 0.17 TCGA-AC-A3QP-01 15 31197852 31197852 A T FAN1 Missense_Mutation p.D329V 0.21 tolerated(0.08) benign(0.188) TCGA-AC-A3QP-01 15 85113784 85113784 T G UBE2Q2P1 RNA 0.13 TCGA-AC-A3QP-01 16 67424196 67424196 G A TPPP3 Missense_Mutation p.R138C 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-AC-A3QP-01 17 12894850 12894850 A G ARHGAP44 3'UTR 0.20 TCGA-AC-A3QP-01 17 79478936 79478936 A G ACTG1 Missense_Mutation p.M119T 0.23 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-AC-A3QP-01 19 1080476 1080476 C A HMHA1 Missense_Mutation p.H630Q 0.15 tolerated(0.21) benign(0.312) TCGA-AC-A3QP-01 19 16620384 16620384 G A C19orf44 Silent p.P408P 0.22 TCGA-AC-A3QP-01 19 22001917 22001917 T C ZNF43 Missense_Mutation p.Y37C 0.19 deleterious(0) benign(0.32) TCGA-AC-A3QP-01 19 42594464 42594464 G A POU2F2 3'Flank 0.12 TCGA-AC-A3QP-01 1 180165578 180165578 T C QSOX1 Silent p.A550A 0.15 TCGA-AC-A3QP-01 1 203140616 203140616 T C MYBPH Missense_Mutation p.I230V 0.15 tolerated(0.14) benign(0.044) TCGA-AC-A3QP-01 1 35921805 35921806 - A KIAA0319L Frame_Shift_Ins p.T489Yfs*41 0.17 TCGA-AC-A3QP-01 22 39128366 39128366 A T GTPBP1 3'UTR 0.19 TCGA-AC-A3QP-01 2 111562844 111562844 G C ACOXL Missense_Mutation p.G209R 0.18 deleterious(0) probably_damaging(0.99) TCGA-AC-A3QP-01 2 175436391 175436391 C T WIPF1 Intron 0.11 TCGA-AC-A3QP-01 3 15483744 15483744 A G EAF1 3'UTR 0.15 TCGA-AC-A3QP-01 3 15520859 15520859 G A COLQ Missense_Mutation p.P118S 0.34 deleterious(0.01) unknown(0) TCGA-AC-A3QP-01 3 169846622 169846622 G T PHC3 Silent p.G546G 0.25 TCGA-AC-A3QP-01 7 117375424 117375426 ATG - CTTNBP2 In_Frame_Del p.I1196del 0.18 TCGA-AC-A3QP-01 8 38369605 38369605 C A C8orf86 3'UTR 0.44 TCGA-AC-A3QP-01 8 61533234 61533234 C T RAB2A Missense_Mutation p.A182V 0.26 tolerated(0.24) benign(0.002) TCGA-AC-A3QP-01 9 108210373 108210373 G T FSD1L 5'Flank 0.46 TCGA-AC-A3QP-01 9 113189940 113189940 A T SVEP1 Missense_Mutation p.I1969N 0.26 probably_damaging(0.971) TCGA-AC-A3QP-01 9 33470121 33470121 C T NOL6 Silent p.K149K 0.29 TCGA-AC-A3QP-01 X 127185892 127185892 T A ACTRT1 Silent p.G98G 0.30 TCGA-AC-A3QQ-01 10 116698281 116698281 A C TRUB1 Missense_Mutation p.K90T 0.11 deleterious(0) probably_damaging(0.917) TCGA-AC-A3QQ-01 11 126073412 126073412 A C RPUSD4 Silent p.L345L 0.57 TCGA-AC-A3QQ-01 11 66326744 66326744 G A CTSF 3'Flank 0.12 TCGA-AC-A3QQ-01 13 113739462 113739462 G T MCF2L Missense_Mutation p.Q739H 0.32 deleterious(0) probably_damaging(0.993) TCGA-AC-A3QQ-01 15 41864692 41864692 T A TYRO3 Missense_Mutation p.I602N 0.20 deleterious(0) possibly_damaging(0.902) TCGA-AC-A3QQ-01 15 45399130 45399130 G T DUOX2 Missense_Mutation p.D577E 0.29 tolerated(1) benign(0) TCGA-AC-A3QQ-01 16 55362755 55362755 G A IRX6 Missense_Mutation p.A289T 0.60 tolerated(0.56) benign(0.003) TCGA-AC-A3QQ-01 16 67070564 67070564 A T CBFB Missense_Mutation p.N63I 0.49 deleterious(0) probably_damaging(0.996) TCGA-AC-A3QQ-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.44 TCGA-AC-A3QQ-01 19 30935083 30935083 G A ZNF536 Missense_Mutation p.R205H 0.30 deleterious(0) probably_damaging(0.996) TCGA-AC-A3QQ-01 19 55677714 55677714 A T DNAAF3 Missense_Mutation p.L70Q 0.35 deleterious(0.03) probably_damaging(0.982) TCGA-AC-A3QQ-01 19 9060801 9060801 C T MUC16 Missense_Mutation p.R8882Q 0.23 unknown(0) TCGA-AC-A3QQ-01 1 1374601 1374601 C T VWA1 Missense_Mutation p.R258C 0.62 deleterious(0.02) probably_damaging(0.985) TCGA-AC-A3QQ-01 1 147400568 147400568 C G GPR89B 5'UTR 0.27 TCGA-AC-A3QQ-01 1 158449709 158449709 C T OR10R2 Silent p.Y14Y 0.05 TCGA-AC-A3QQ-01 1 179851857 179851857 G A TOR1AIP1 Missense_Mutation p.V74M 0.07 tolerated_low_confidence(0.07) benign(0.326) TCGA-AC-A3QQ-01 1 206785802 206785802 G A EIF2D 5'UTR 0.10 TCGA-AC-A3QQ-01 21 33984502 33984502 C T C21orf59 Missense_Mutation p.A18T 0.33 tolerated(1) benign(0.001) TCGA-AC-A3QQ-01 22 37767549 37767549 C T ELFN2 3'UTR 0.36 TCGA-AC-A3QQ-01 22 46655703 46655703 G A PKDREJ Missense_Mutation p.R1173W 0.10 deleterious(0.01) benign(0.056) TCGA-AC-A3QQ-01 2 179604417 179604417 T A TTN Nonsense_Mutation p.K4515* 0.24 TCGA-AC-A3QQ-01 2 219922327 219922327 C T IHH Silent p.E135E 0.18 TCGA-AC-A3QQ-01 2 238249539 238249539 A C COL6A3 Missense_Mutation p.S2674A 0.22 unknown(0) TCGA-AC-A3QQ-01 2 55187356 55187356 G A EML6 Silent p.P1618P 0.17 TCGA-AC-A3QQ-01 2 69759204 69759204 C T AAK1 Missense_Mutation p.G209R 0.18 deleterious(0) unknown(0) TCGA-AC-A3QQ-01 2 7164529 7164529 C T RNF144A Missense_Mutation p.A180V 0.23 tolerated(0.22) benign(0.032) TCGA-AC-A3QQ-01 3 58487375 58487375 C T KCTD6 3'UTR 0.21 TCGA-AC-A3QQ-01 3 75679920 75679920 G A MIR1324 RNA 0.08 TCGA-AC-A3QQ-01 4 49030717 49030717 T A CWH43 Missense_Mutation p.S446R 0.21 deleterious(0) possibly_damaging(0.844) TCGA-AC-A3QQ-01 5 156533700 156533700 C T HAVCR2 Missense_Mutation p.R111Q 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A3QQ-01 5 54527266 54527266 G - CCNO Frame_Shift_Del p.L331* 0.51 TCGA-AC-A3QQ-01 6 31902030 31902030 A G C2 Missense_Mutation p.N268S 0.29 tolerated(0.77) benign(0.003) TCGA-AC-A3QQ-01 6 75794431 75794431 G C COL12A1 3'UTR 0.23 TCGA-AC-A3QQ-01 9 137630635 137630635 T C COL5A1 Missense_Mutation p.V492A 0.07 benign(0.191) TCGA-AC-A3QQ-01 9 97372310 97372310 G A FBP1 Silent p.L154L 0.26 TCGA-AC-A3QQ-01 X 153587485 153587485 A T FLNA Missense_Mutation p.D1447E 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-AC-A3QQ-01 X 31089898 31089898 C T FTHL17 Missense_Mutation p.R58H 0.37 tolerated(1) benign(0.117) TCGA-AC-A3W5-01 10 104378878 104378878 G A SUFU Intron 0.16 TCGA-AC-A3W5-01 10 69672314 69672314 G A SIRT1 Missense_Mutation p.D481N 0.18 tolerated(0.13) possibly_damaging(0.817) TCGA-AC-A3W5-01 10 70231672 70231672 G C DNA2 Missense_Mutation p.P70A 0.09 tolerated_low_confidence(0.07) benign(0.005) TCGA-AC-A3W5-01 10 70453026 70453026 C T TET1 3'UTR 0.19 TCGA-AC-A3W5-01 10 72538331 72538331 A C TBATA Missense_Mutation p.D163E 0.06 tolerated(0.36) benign(0.022) TCGA-AC-A3W5-01 10 76857643 76857643 C T DUSP13 Silent p.A50A 0.22 TCGA-AC-A3W5-01 11 114168854 114168854 C A NNMT Silent p.T112T 0.16 TCGA-AC-A3W5-01 11 1162114 1162114 G A MUC5AC Missense_Mutation p.G569S 0.16 deleterious(0) probably_damaging(0.998) TCGA-AC-A3W5-01 11 132286928 132286928 A C OPCML 3'UTR 0.16 TCGA-AC-A3W5-01 11 57947558 57947558 C G OR9Q1 Missense_Mutation p.I214M 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A3W5-01 11 58949804 58949804 G T DTX4 Silent p.G268G 0.14 TCGA-AC-A3W5-01 11 58980425 58980425 G A MPEG1 5'Flank 0.23 TCGA-AC-A3W5-01 11 62763237 62763237 C T SLC22A8 Missense_Mutation p.A314T 0.20 tolerated(0.36) benign(0.011) TCGA-AC-A3W5-01 11 66130807 66130807 C T RP11-867G23.8 Missense_Mutation p.P19L 0.72 unknown(0) TCGA-AC-A3W5-01 11 681044 681053 CCTTCTTGCG - DEAF1 Frame_Shift_Del p.K304Mfs*8 0.23 TCGA-AC-A3W5-01 11 71504509 71504509 C A FAM86C1 Silent p.G81G 0.07 TCGA-AC-A3W5-01 12 125298822 125298822 G A SCARB1 Missense_Mutation p.P186S 0.09 tolerated(0.08) possibly_damaging(0.596) TCGA-AC-A3W5-01 12 125470788 125470788 C G DHX37 Missense_Mutation p.D44H 0.17 deleterious(0) benign(0.004) TCGA-AC-A3W5-01 12 133198228 133198228 C G P2RX2 Missense_Mutation p.I388M 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A3W5-01 12 2801676 2801676 G T CACNA1C 3'Flank 0.34 TCGA-AC-A3W5-01 12 28123106 28123106 C G PTHLH 5'UTR 0.16 TCGA-AC-A3W5-01 12 32760927 32760927 C T FGD4 Missense_Mutation p.H344Y 0.07 deleterious(0) probably_damaging(0.954) TCGA-AC-A3W5-01 12 49952703 49952703 G A MCRS1 Nonsense_Mutation p.R422* 0.15 TCGA-AC-A3W5-01 12 53587587 53587587 C G ITGB7 Missense_Mutation p.E469D 0.23 tolerated(0.15) benign(0.333) TCGA-AC-A3W5-01 12 7080048 7080048 A T EMG1 5'UTR 0.13 TCGA-AC-A3W5-01 12 85674145 85674145 G C ALX1 Missense_Mutation p.D36H 0.12 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-AC-A3W5-01 12 89918400 89918400 C T GALNT4 5'UTR 0.28 TCGA-AC-A3W5-01 12 92821925 92821925 G C CLLU1 Intron 0.11 TCGA-AC-A3W5-01 13 114156090 114156090 G A TMCO3 Silent p.L280L 0.16 TCGA-AC-A3W5-01 13 33249987 33249987 G T PDS5B Missense_Mutation p.D285Y 0.26 deleterious(0) probably_damaging(0.982) TCGA-AC-A3W5-01 13 45913711 45913711 C G TPT1 Missense_Mutation p.R107T 0.16 deleterious(0.03) possibly_damaging(0.51) TCGA-AC-A3W5-01 13 61985529 61985529 G A PCDH20 Silent p.I901I 0.16 TCGA-AC-A3W5-01 13 86369675 86369675 T G SLITRK6 Missense_Mutation p.Q323H 0.09 tolerated(0.21) benign(0) TCGA-AC-A3W5-01 13 95727760 95727760 A G ABCC4 Missense_Mutation p.L911P 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A3W5-01 13 99114109 99114109 G C STK24 Missense_Mutation p.D336E 0.58 tolerated(0.65) benign(0) TCGA-AC-A3W5-01 13 99534235 99534235 C T DOCK9 Silent p.V862V 0.11 TCGA-AC-A3W5-01 14 100612882 100612882 G A DEGS2 3'UTR 0.50 TCGA-AC-A3W5-01 14 23995766 23995766 G C ZFHX2 Missense_Mutation p.P1129A 0.45 probably_damaging(0.997) TCGA-AC-A3W5-01 14 24003350 24003350 G C ZFHX2 Silent p.T395T 0.39 TCGA-AC-A3W5-01 14 24847040 24847040 T A NFATC4 3'UTR 0.20 TCGA-AC-A3W5-01 14 24975399 24975399 C A CMA1 Silent p.R145R 0.11 TCGA-AC-A3W5-01 14 57280105 57280105 A T OTX2 5'Flank 0.33 TCGA-AC-A3W5-01 14 64693064 64693064 T G SYNE2 3'UTR 0.79 TCGA-AC-A3W5-01 14 69708534 69708534 C G EXD2 3'UTR 0.11 TCGA-AC-A3W5-01 14 75245153 75245153 C G YLPM1 Missense_Mutation p.Q293E 0.37 unknown(0) TCGA-AC-A3W5-01 14 75386605 75386605 C G RPS6KL1 Missense_Mutation p.E111D 0.47 deleterious(0) probably_damaging(0.999) TCGA-AC-A3W5-01 14 77605777 77605777 C G ZDHHC22 Missense_Mutation p.R102T 0.18 tolerated(0.08) possibly_damaging(0.874) TCGA-AC-A3W5-01 15 25959223 25959223 C T ATP10A Missense_Mutation p.D648N 0.30 tolerated(0.18) benign(0.009) TCGA-AC-A3W5-01 15 58903290 58903290 A C ADAM10 Missense_Mutation p.I571S 0.12 deleterious(0) probably_damaging(0.935) TCGA-AC-A3W5-01 15 65394948 65394948 G A UBAP1L Silent p.C65C 0.13 TCGA-AC-A3W5-01 15 84908689 84908689 A G GOLGA6L4 Missense_Mutation p.R195G 0.14 deleterious(0.04) unknown(0) TCGA-AC-A3W5-01 16 30215651 30215651 G C RP11-347C12.3 3'UTR 0.18 TCGA-AC-A3W5-01 16 31373987 31373987 C T ITGAX Silent p.A424A 0.10 TCGA-AC-A3W5-01 16 4506632 4506632 G C DNAJA3 3'UTR 0.08 TCGA-AC-A3W5-01 16 57755632 57755632 G C CCDC135 Missense_Mutation p.Q420H 0.15 tolerated(0.07) possibly_damaging(0.834) TCGA-AC-A3W5-01 16 824291 824291 G A MSLNL Missense_Mutation p.S622L 0.35 benign(0.027) TCGA-AC-A3W5-01 16 86371274 86371274 C G LINC00917 RNA 0.22 TCGA-AC-A3W5-01 17 10440751 10440751 A G MYH2 Missense_Mutation p.F566L 0.16 tolerated(0.08) benign(0.218) TCGA-AC-A3W5-01 17 26898358 26898358 C G PIGS Intron 0.18 TCGA-AC-A3W5-01 17 38498997 38498997 C T RARA Intron 0.14 TCGA-AC-A3W5-01 17 38818225 38818227 CTT - KRT222 In_Frame_Del p.K56del 0.15 TCGA-AC-A3W5-01 17 41955086 41955086 G T MPP2 3'UTR 0.36 TCGA-AC-A3W5-01 17 41955096 41955096 G C MPP2 3'UTR 0.38 TCGA-AC-A3W5-01 17 47893207 47893207 G C KAT7 Missense_Mutation p.E299Q 0.18 tolerated(0.16) benign(0.041) TCGA-AC-A3W5-01 17 61912805 61912805 C G SMARCD2 Missense_Mutation p.W230C 0.12 deleterious(0) probably_damaging(0.996) TCGA-AC-A3W5-01 17 65979807 65979807 G C BPTF 3'Flank 0.18 TCGA-AC-A3W5-01 17 71203396 71203396 G A COG1 Splice_Site p.X935_splice 0.25 TCGA-AC-A3W5-01 17 76421448 76421448 C T DNAH17 Missense_Mutation p.V4397M 0.13 probably_damaging(0.973) TCGA-AC-A3W5-01 18 19995559 19995559 A - CTAGE1 Frame_Shift_Del p.F739Sfs*17 0.11 TCGA-AC-A3W5-01 18 23865876 23865878 CCT - TAF4B In_Frame_Del p.P335del 0.17 TCGA-AC-A3W5-01 18 29787384 29787384 G C MEP1B Missense_Mutation p.M239I 0.14 tolerated(0.1) benign(0.052) TCGA-AC-A3W5-01 18 29797730 29797730 G A MEP1B Silent p.Q631Q 0.43 TCGA-AC-A3W5-01 18 55146685 55146685 C T ONECUT2 3'UTR 0.28 TCGA-AC-A3W5-01 19 10204546 10204546 C G ANGPTL6 Missense_Mutation p.Q258H 0.07 deleterious(0.03) possibly_damaging(0.764) TCGA-AC-A3W5-01 19 10477118 10477118 G A TYK2 Silent p.L202L 0.19 TCGA-AC-A3W5-01 19 11417278 11417278 A T TSPAN16 Splice_Site p.X151_splice 0.40 TCGA-AC-A3W5-01 19 1397334 1397334 G C GAMT 3'Flank 0.18 TCGA-AC-A3W5-01 19 19932520 19932520 G A ZNF506 5'UTR 0.16 TCGA-AC-A3W5-01 19 36821306 36821306 C G LINC00665 RNA 0.10 TCGA-AC-A3W5-01 19 38689102 38689102 G A SIPA1L3 Silent p.L1638L 0.31 TCGA-AC-A3W5-01 19 39328289 39328289 G C AC104534.3 Missense_Mutation p.I137M 0.16 tolerated(0.13) unknown(0) TCGA-AC-A3W5-01 19 40722044 40722044 G A TTC9B 3'UTR 0.10 TCGA-AC-A3W5-01 19 40978681 40978681 G A SPTBN4 Silent p.R51R 0.11 TCGA-AC-A3W5-01 19 43258545 43258545 A G PSG8 Missense_Mutation p.S395P 0.21 tolerated(0.23) probably_damaging(0.981) TCGA-AC-A3W5-01 19 45976235 45976235 G A FOSB Missense_Mutation p.D328N 0.18 deleterious(0.02) possibly_damaging(0.864) TCGA-AC-A3W5-01 19 50412334 50412334 G A NUP62 Missense_Mutation p.T244I 0.15 deleterious(0) probably_damaging(0.987) TCGA-AC-A3W5-01 19 51470541 51470541 G A KLK6 Silent p.P27P 0.31 TCGA-AC-A3W5-01 19 53344462 53344462 T C ZNF468 Missense_Mutation p.K362R 0.10 deleterious(0.04) possibly_damaging(0.64) TCGA-AC-A3W5-01 19 54972430 54972430 C T LENG8 3'UTR 0.21 TCGA-AC-A3W5-01 19 55396826 55396826 G A FCAR Missense_Mutation p.E84K 0.39 tolerated(0.24) probably_damaging(0.938) TCGA-AC-A3W5-01 19 5951449 5951449 G C RANBP3 Silent p.P79P 0.09 TCGA-AC-A3W5-01 19 8436129 8436129 G C ANGPTL4 Missense_Mutation p.E254D 0.18 tolerated(0.16) probably_damaging(0.999) TCGA-AC-A3W5-01 1 1111032 1111032 G A TTLL10 Intron 0.18 TCGA-AC-A3W5-01 1 113642885 113642885 C G LRIG2 Missense_Mutation p.L409V 0.27 deleterious(0) probably_damaging(0.993) TCGA-AC-A3W5-01 1 145510572 145510572 C A RBM8A 3'UTR 0.12 TCGA-AC-A3W5-01 1 151826027 151826027 G A THEM5 Silent p.C5C 0.52 TCGA-AC-A3W5-01 1 153617980 153617980 A G CHTOP 3'UTR 0.81 TCGA-AC-A3W5-01 1 155584255 155584255 G C MSTO1 3'UTR 0.32 TCGA-AC-A3W5-01 1 158150733 158150733 A T CD1D 5'UTR 0.17 TCGA-AC-A3W5-01 1 160275320 160275320 T C COPA Missense_Mutation p.I533V 0.41 tolerated(0.44) benign(0.011) TCGA-AC-A3W5-01 1 1670778 1670778 C T SLC35E2 Silent p.S73S 0.14 TCGA-AC-A3W5-01 1 1689962 1689962 C T NADK Intron 0.17 TCGA-AC-A3W5-01 1 169483582 169483582 C G F5 Missense_Mutation p.R2215P 0.13 deleterious(0) probably_damaging(1) TCGA-AC-A3W5-01 1 19401192 19401192 C T UBR4 3'UTR 0.19 TCGA-AC-A3W5-01 1 205113425 205113425 G C DSTYK 3'UTR 0.25 TCGA-AC-A3W5-01 1 206139134 206139134 T C FAM72A 5'UTR 0.37 TCGA-AC-A3W5-01 1 216424381 216424381 C G USH2A Missense_Mutation p.Q677H 0.15 benign(0.071) TCGA-AC-A3W5-01 1 220970115 220970115 C G MARC1 Missense_Mutation p.Q194E 0.22 tolerated(1) benign(0.004) TCGA-AC-A3W5-01 1 221875987 221875987 T A DUSP10 Missense_Mutation p.I406F 0.27 deleterious(0) probably_damaging(0.99) TCGA-AC-A3W5-01 1 224581617 224581617 T C WDR26 Missense_Mutation p.I625V 0.25 tolerated(0.5) benign(0.021) TCGA-AC-A3W5-01 1 227069694 227069694 G A PSEN2 Missense_Mutation p.R29H 0.16 tolerated(0.16) possibly_damaging(0.512) TCGA-AC-A3W5-01 1 231052013 231052013 C T TTC13 Silent p.V673V 0.07 TCGA-AC-A3W5-01 1 235884201 235884201 C T LYST Missense_Mutation p.R3107H 0.21 deleterious(0) possibly_damaging(0.684) TCGA-AC-A3W5-01 1 241912945 241912945 T G WDR64 Missense_Mutation p.L554R 0.25 deleterious(0) probably_damaging(0.977) TCGA-AC-A3W5-01 1 246490592 246490592 C G SMYD3 Missense_Mutation p.V148L 0.14 tolerated(0.12) benign(0.003) TCGA-AC-A3W5-01 1 247076662 247076662 T A AHCTF1 Missense_Mutation p.Q152L 0.09 deleterious(0.01) probably_damaging(0.939) TCGA-AC-A3W5-01 1 25167506 25167506 G T CLIC4 3'UTR 0.21 TCGA-AC-A3W5-01 1 28087946 28087946 G A FAM76A 3'Flank 0.09 TCGA-AC-A3W5-01 1 31212662 31212662 G A LAPTM5 Silent p.S127S 0.12 TCGA-AC-A3W5-01 1 31347230 31347230 C T SDC3 Missense_Mutation p.G359D 0.32 tolerated(0.3) unknown(0) TCGA-AC-A3W5-01 1 31532258 31532273 TGCAGCTGGTTGTGGC - PUM1 Frame_Shift_Del p.P48Ifs*17 0.28 TCGA-AC-A3W5-01 1 31905815 31905815 C T SERINC2 Silent p.L348L 0.27 TCGA-AC-A3W5-01 1 76540537 76540537 G C ST6GALNAC3 5'UTR 0.16 TCGA-AC-A3W5-01 1 92940395 92940395 A T GFI1 3'UTR 0.38 TCGA-AC-A3W5-01 20 17446041 17446041 G A PCSK2 Missense_Mutation p.E425K 0.28 tolerated(0.49) possibly_damaging(0.809) TCGA-AC-A3W5-01 20 44470669 44470669 C T SNX21 3'Flank 0.30 TCGA-AC-A3W5-01 20 44486340 44486340 G A ZSWIM3 5'UTR 0.18 TCGA-AC-A3W5-01 20 44693855 44693855 C G NCOA5 Missense_Mutation p.E214D 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-AC-A3W5-01 20 52184524 52184524 G C ZNF217 3'UTR 0.33 TCGA-AC-A3W5-01 20 62121944 62121944 T A EEF1A2 Missense_Mutation p.D306V 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-AC-A3W5-01 20 62226998 62226998 G C GMEB2 Missense_Mutation p.A195G 0.33 tolerated(0.26) benign(0) TCGA-AC-A3W5-01 21 28338436 28338436 T A ADAMTS5 Missense_Mutation p.Y92F 0.23 tolerated(0.24) probably_damaging(0.998) TCGA-AC-A3W5-01 21 43557583 43557583 C T UMODL1 Silent p.A1398A 0.15 TCGA-AC-A3W5-01 21 46191243 46191243 G C UBE2G2 3'UTR 0.17 TCGA-AC-A3W5-01 21 47423943 47423943 G A COL6A1 3'UTR 0.12 TCGA-AC-A3W5-01 22 19429202 19429202 C T C22orf39 3'Flank 0.30 TCGA-AC-A3W5-01 22 21801181 21801181 C G HIC2 3'UTR 0.07 TCGA-AC-A3W5-01 22 33670434 33670434 G A LARGE Silent p.L750L 0.15 TCGA-AC-A3W5-01 22 39260435 39260435 G A CBX6 3'UTR 0.12 TCGA-AC-A3W5-01 22 43634956 43634956 C T SCUBE1 Silent p.T244T 0.30 TCGA-AC-A3W5-01 22 46505224 46505224 G A FLJ27365 Nonsense_Mutation p.W76* 0.10 TCGA-AC-A3W5-01 2 135741343 135741343 G C MAP3K19 Nonsense_Mutation p.S1042* 0.16 TCGA-AC-A3W5-01 2 152506758 152506758 T A NEB Nonsense_Mutation p.K2455* 0.20 TCGA-AC-A3W5-01 2 153573970 153573970 C G PRPF40A 5'UTR 0.12 TCGA-AC-A3W5-01 2 160798454 160798454 G A PLA2R1 Silent p.V1409V 0.20 TCGA-AC-A3W5-01 2 179399058 179399058 T G TTN Missense_Mutation p.H34095P 0.20 TCGA-AC-A3W5-01 2 209180075 209180075 G T PIKFYVE Missense_Mutation p.R662L 0.35 deleterious(0) probably_damaging(1) TCGA-AC-A3W5-01 2 36777038 36777038 G A CRIM1 3'UTR 0.28 TCGA-AC-A3W5-01 2 43994182 43994182 C A PLEKHH2 3'UTR 0.24 TCGA-AC-A3W5-01 2 62450520 62450520 C T B3GNT2 Nonsense_Mutation p.Q389* 0.17 TCGA-AC-A3W5-01 2 89117805 89117805 C G AC096579.13 RNA 0.07 TCGA-AC-A3W5-01 3 124839684 124839684 T A SLC12A8 Intron 0.14 TCGA-AC-A3W5-01 3 12626146 12626146 G A RAF1 Missense_Mutation p.S605F 0.16 deleterious(0) probably_damaging(0.921) TCGA-AC-A3W5-01 3 153993542 153993542 A G DHX36 3'UTR 0.12 TCGA-AC-A3W5-01 3 15492617 15492617 C G COLQ 3'UTR 0.14 TCGA-AC-A3W5-01 3 158323091 158323091 C T MLF1 3'UTR 0.09 TCGA-AC-A3W5-01 3 192514998 192514998 T - MB21D2 3'UTR 0.12 TCGA-AC-A3W5-01 3 196388546 196388546 C G NRROS Missense_Mutation p.L678V 0.22 deleterious(0) possibly_damaging(0.849) TCGA-AC-A3W5-01 3 24160082 24160082 T G THRB 3'UTR 0.19 TCGA-AC-A3W5-01 3 38802827 38802827 C A SCN10A Missense_Mutation p.A247S 0.11 tolerated(0.92) possibly_damaging(0.555) TCGA-AC-A3W5-01 3 44283490 44283490 C T TOPAZ1 5'UTR 0.13 TCGA-AC-A3W5-01 3 46399722 46399722 A T CCR2 Missense_Mutation p.E235V 0.17 deleterious(0) possibly_damaging(0.889) TCGA-AC-A3W5-01 3 48454480 48454480 G A PLXNB1 Missense_Mutation p.T1545I 0.13 deleterious(0) probably_damaging(0.972) TCGA-AC-A3W5-01 4 110454767 110454767 G T SEC24B Missense_Mutation p.G1172W 0.16 deleterious(0) probably_damaging(1) TCGA-AC-A3W5-01 4 110932572 110932572 G C EGF Missense_Mutation p.R1195S 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AC-A3W5-01 4 144106563 144106563 C G USP38 5'UTR 0.11 TCGA-AC-A3W5-01 4 156136013 156136013 A C NPY2R Missense_Mutation p.T308P 0.36 tolerated(0.06) probably_damaging(0.997) TCGA-AC-A3W5-01 4 189068232 189068232 A C TRIML1 Silent p.P371P 0.12 TCGA-AC-A3W5-01 4 56283243 56283243 G A TMEM165 Silent p.L146L 0.10 TCGA-AC-A3W5-01 4 5841382 5841382 T C CRMP1 Missense_Mutation p.I393V 0.17 deleterious(0.03) benign(0.276) TCGA-AC-A3W5-01 4 70512828 70512828 C T UGT2A1 Missense_Mutation p.V179M 0.29 tolerated(0.38) probably_damaging(0.936) TCGA-AC-A3W5-01 4 77003077 77003077 A C ART3 Missense_Mutation p.K57T 0.10 tolerated(0.06) benign(0.035) TCGA-AC-A3W5-01 4 7725558 7725558 G A SORCS2 Silent p.R853R 0.21 TCGA-AC-A3W5-01 4 80327654 80327654 G A GK2 3'UTR 0.11 TCGA-AC-A3W5-01 4 85696135 85696135 C G WDFY3 Splice_Site p.X1531_splice 0.39 TCGA-AC-A3W5-01 5 134678857 134678857 G T C5orf66 Missense_Mutation p.G47C 0.50 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AC-A3W5-01 5 139422059 139422059 T G NRG2 Missense_Mutation p.E199A 0.26 tolerated(0.07) benign(0.184) TCGA-AC-A3W5-01 5 150564003 150564003 C G CCDC69 Splice_Site p.X206_splice 0.23 TCGA-AC-A3W5-01 5 2755228 2755228 G A C5orf38 3'UTR 0.18 TCGA-AC-A3W5-01 5 39202503 39202503 A C FYB Missense_Mutation p.L197R 0.25 tolerated(0.1) benign(0.035) TCGA-AC-A3W5-01 6 133078956 133078957 GA T VNN2 Frame_Shift_Del p.Q23Rfs*5 0.11 TCGA-AC-A3W5-01 6 24836037 24836037 C T FAM65B Missense_Mutation p.G722E 0.12 deleterious(0) probably_damaging(0.913) TCGA-AC-A3W5-01 6 29588977 29588977 G A GABBR1 Silent p.I408I 0.18 TCGA-AC-A3W5-01 6 29589964 29589964 C A GABBR1 Nonsense_Mutation p.E328* 0.28 TCGA-AC-A3W5-01 6 33172845 33172845 G A HSD17B8 Silent p.Q73Q 0.20 TCGA-AC-A3W5-01 6 38899636 38899636 A G DNAH8 Missense_Mutation p.Y3558C 0.38 probably_damaging(0.996) TCGA-AC-A3W5-01 6 41557815 41557815 C G FOXP4 Missense_Mutation p.L422V 0.14 tolerated(0.31) possibly_damaging(0.77) TCGA-AC-A3W5-01 6 43603604 43603604 G A MAD2L1BP Intron 0.07 TCGA-AC-A3W5-01 6 44241109 44241109 A C TMEM151B Missense_Mutation p.S148R 0.31 deleterious(0.01) possibly_damaging(0.876) TCGA-AC-A3W5-01 6 53409497 53409497 C T GCLC 5'UTR 0.29 TCGA-AC-A3W5-01 6 88074687 88074687 T A C6orf163 Missense_Mutation p.V188E 0.17 tolerated(0.15) benign(0.004) TCGA-AC-A3W5-01 6 89808454 89808454 G T SRSF12 Nonsense_Mutation p.S210* 0.16 TCGA-AC-A3W5-01 7 107717415 107717415 C T LAMB4 Missense_Mutation p.A700T 0.11 tolerated(0.33) benign(0.003) TCGA-AC-A3W5-01 7 122078500 122078500 C A CADPS2 Missense_Mutation p.A791S 0.15 tolerated(0.35) benign(0.146) TCGA-AC-A3W5-01 7 122342418 122342418 G C RNF148 Missense_Mutation p.I129M 0.26 deleterious(0) possibly_damaging(0.655) TCGA-AC-A3W5-01 7 139715520 139715520 C G TBXAS1 Intron 0.13 TCGA-AC-A3W5-01 7 157041230 157041230 G C UBE3C Missense_Mutation p.G884R 0.08 deleterious(0) probably_damaging(0.996) TCGA-AC-A3W5-01 7 39832501 39832501 G A LINC00265 RNA 0.10 TCGA-AC-A3W5-01 7 54636793 54636793 T - VSTM2A 3'UTR 0.28 TCGA-AC-A3W5-01 7 72987683 72987683 C A TBL2 Missense_Mutation p.A189S 0.10 tolerated(0.23) possibly_damaging(0.579) TCGA-AC-A3W5-01 7 82579668 82579668 C T PCLO Silent p.K3412K 0.06 TCGA-AC-A3W5-01 7 88423598 88423598 G C C7orf62 Missense_Mutation p.S220C 0.10 tolerated(0.39) benign(0.009) TCGA-AC-A3W5-01 7 94989421 94989421 A C PON3 Missense_Mutation p.L310W 0.18 deleterious(0.01) possibly_damaging(0.86) TCGA-AC-A3W5-01 8 10782233 10782233 C T XKR6 Missense_Mutation p.R291H 0.12 tolerated(0.28) probably_damaging(0.998) TCGA-AC-A3W5-01 8 145049453 145049453 G A PARP10 3'Flank 0.12 TCGA-AC-A3W5-01 8 37686409 37686409 C G GPR124 Missense_Mutation p.D114E 0.23 deleterious(0.02) possibly_damaging(0.67) TCGA-AC-A3W5-01 9 101594189 101594189 A T GALNT12 Silent p.T289T 0.30 TCGA-AC-A3W5-01 9 123364806 123364806 G A MEGF9 3'UTR 0.62 TCGA-AC-A3W5-01 9 128122822 128122822 G C GAPVD1 Missense_Mutation p.A1381P 0.24 deleterious(0.03) probably_damaging(0.981) TCGA-AC-A3W5-01 9 13192200 13192200 C T MPDZ Missense_Mutation p.R633Q 0.08 tolerated(0.4) benign(0.031) TCGA-AC-A3W5-01 9 139343242 139343242 A G SEC16A Intron 0.18 TCGA-AC-A3W5-01 9 26993534 26993534 A T LRRC19 3'UTR 0.10 TCGA-AC-A3W5-01 9 34369976 34369976 T C KIAA1161 3'UTR 0.19 TCGA-AC-A3W5-01 9 34625785 34625785 C G ARID3C Missense_Mutation p.K115N 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-AC-A3W5-01 9 84605787 84605787 G C SPATA31D1 Missense_Mutation p.K134N 0.05 tolerated(1) benign(0.001) TCGA-AC-A3W5-01 X 1428420 1428420 C T CSF2RA 3'UTR 0.06 TCGA-AC-A3W5-01 X 153133854 153133854 T G L1CAM Missense_Mutation p.T536P 0.14 deleterious(0.03) possibly_damaging(0.857) TCGA-AC-A3W5-01 X 153626928 153626928 G A RPL10 Intron 0.09 TCGA-AC-A3W5-01 X 96139695 96139695 G T RPA4 Missense_Mutation p.G129V 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A3YI-01 10 104536005 104536005 G T WBP1L Intron 0.15 TCGA-AC-A3YI-01 10 120801851 120801851 G A EIF3A Missense_Mutation p.R1061C 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-AC-A3YI-01 11 119210295 119210295 A G C1QTNF5 Missense_Mutation p.Y160H 0.16 deleterious(0) probably_damaging(0.978) TCGA-AC-A3YI-01 13 38211169 38211169 C A TRPC4 Silent p.V940V 0.07 TCGA-AC-A3YI-01 15 63824724 63824724 G A USP3 Intron 0.11 TCGA-AC-A3YI-01 16 68862200 68862201 - G CDH1 Frame_Shift_Ins p.D764Gfs*5 0.13 TCGA-AC-A3YI-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.11 deleterious(0) probably_damaging(1) TCGA-AC-A3YI-01 19 54759985 54759985 C A LILRB5 Missense_Mutation p.R192S 0.10 tolerated(0.18) benign(0.012) TCGA-AC-A3YI-01 19 9058918 9058918 C T MUC16 Missense_Mutation p.E9510K 0.17 unknown(0) TCGA-AC-A3YI-01 1 159810535 159810535 T C C1orf204 Silent p.L188L 0.08 TCGA-AC-A3YI-01 20 20020344 20020344 A C CRNKL1 Missense_Mutation p.F646C 0.09 deleterious(0) probably_damaging(0.947) TCGA-AC-A3YI-01 2 157367335 157367335 A G GPD2 Missense_Mutation p.D101G 0.10 deleterious(0.02) benign(0.018) TCGA-AC-A3YI-01 2 43927380 43927380 C A PLEKHH2 Missense_Mutation p.T428K 0.13 tolerated(0.89) benign(0.017) TCGA-AC-A3YI-01 4 129143606 129143606 C T LARP1B 3'Flank 0.11 TCGA-AC-A3YI-01 4 88029432 88029432 G A AFF1 Missense_Mutation p.E500K 0.16 deleterious(0.04) unknown(0) TCGA-AC-A3YI-01 5 140263869 140263869 C T PCDHA13 Silent p.S672S 0.13 TCGA-AC-A3YI-01 7 128850855 128850855 A G SMO Missense_Mutation p.M568V 0.10 tolerated(0.42) benign(0.023) TCGA-AC-A3YI-01 7 132937919 132937919 C T EXOC4 Missense_Mutation p.S21L 0.21 deleterious(0) probably_damaging(0.982) TCGA-AC-A3YI-01 7 77585733 77585733 C T PHTF2 3'UTR 0.40 TCGA-AC-A3YJ-01 10 73545397 73545397 G A CDH23 Missense_Mutation p.V1913I 0.26 tolerated(0.67) benign(0.009) TCGA-AC-A3YJ-01 10 89692862 89692868 GACAATC T PTEN In_Frame_Del p.D116_H118delinsY 0.22 TCGA-AC-A3YJ-01 10 95557106 95557106 G A LGI1 Missense_Mutation p.R407H 0.43 deleterious(0.05) benign(0.117) TCGA-AC-A3YJ-01 11 59612967 59612967 A T GIF 5'UTR 0.14 TCGA-AC-A3YJ-01 11 63533672 63533672 C A C11orf95 RNA 0.29 TCGA-AC-A3YJ-01 11 64533497 64533497 G A SF1 Intron 0.45 TCGA-AC-A3YJ-01 14 45396625 45396625 T C KLHL28 3'UTR 0.54 TCGA-AC-A3YJ-01 14 47120980 47120980 C T RPL10L 5'UTR 0.17 TCGA-AC-A3YJ-01 17 48701409 48701409 G A CACNA1G Missense_Mutation p.G2068S 0.39 tolerated(0.73) benign(0) TCGA-AC-A3YJ-01 17 5266230 5266232 TGG - RABEP1 In_Frame_Del p.G530del 0.32 TCGA-AC-A3YJ-01 17 58289418 58289418 T C USP32 Missense_Mutation p.I716V 0.36 deleterious(0.03) possibly_damaging(0.651) TCGA-AC-A3YJ-01 17 79781072 79781072 C T FAM195B Intron 0.37 TCGA-AC-A3YJ-01 18 117294 117294 T C ROCK1P1 RNA 0.24 TCGA-AC-A3YJ-01 19 44933891 44933891 T C ZNF229 Silent p.G355G 0.35 TCGA-AC-A3YJ-01 1 117695947 117695947 C T VTCN1 Missense_Mutation p.E164K 0.33 tolerated(0.24) possibly_damaging(0.777) TCGA-AC-A3YJ-01 1 160280027 160280027 G A COPA Silent p.F366F 0.26 TCGA-AC-A3YJ-01 1 160280035 160280035 G A COPA Missense_Mutation p.P364S 0.24 tolerated(0.1) benign(0.02) TCGA-AC-A3YJ-01 1 161009617 161009617 G A USF1 3'UTR 0.22 TCGA-AC-A3YJ-01 1 161009775 161009775 G C USF1 Missense_Mutation p.L290V 0.17 tolerated(0.64) benign(0.01) TCGA-AC-A3YJ-01 1 169555739 169555739 T C F5 5'UTR 0.23 TCGA-AC-A3YJ-01 1 196748946 196748946 T - CFHR3 Frame_Shift_Del p.L92Wfs*60 0.11 TCGA-AC-A3YJ-01 1 201751394 201751394 G A NAV1 Missense_Mutation p.R585H 0.10 tolerated(0.32) benign(0.032) TCGA-AC-A3YJ-01 1 229462566 229462566 A T CCSAP Silent p.A185A 0.08 TCGA-AC-A3YJ-01 20 3736174 3736174 G A C20orf27 Silent p.R106R 0.23 TCGA-AC-A3YJ-01 20 37400366 37400366 C T ACTR5 Silent p.I577I 0.36 TCGA-AC-A3YJ-01 20 47730765 47730765 C A STAU1 3'UTR 0.21 TCGA-AC-A3YJ-01 20 48250927 48250927 G A B4GALT5 3'UTR 0.24 TCGA-AC-A3YJ-01 2 136570331 136570331 C T LCT Missense_Mutation p.V635I 0.41 tolerated(1) benign(0.001) TCGA-AC-A3YJ-01 2 220043703 220043703 A G FAM134A Missense_Mutation p.Y114C 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A3YJ-01 2 220353572 220353572 C T SPEG Missense_Mutation p.P2700L 0.46 probably_damaging(0.999) TCGA-AC-A3YJ-01 2 61472411 61472411 A T USP34 Missense_Mutation p.N2187K 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A3YJ-01 3 155311894 155311894 G A PLCH1 Silent p.D90D 0.43 TCGA-AC-A3YJ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.47 tolerated(0.11) possibly_damaging(0.529) TCGA-AC-A3YJ-01 6 31938577 31938577 G A DXO Silent p.P206P 0.19 TCGA-AC-A3YJ-01 6 42897356 42897356 C T CNPY3 Silent p.P16P 0.26 TCGA-AC-A3YJ-01 6 52530092 52530092 G A RP1-152L7.5 RNA 0.10 TCGA-AC-A3YJ-01 8 21894224 21894224 G T NPM2 3'UTR 0.32 TCGA-AC-A3YJ-01 X 111700352 111700352 G A ZCCHC16 3'UTR 0.16 TCGA-AC-A3YJ-01 X 13337899 13337899 C T ATXN3L Missense_Mutation p.G52E 0.48 deleterious(0.01) possibly_damaging(0.803) TCGA-AC-A3YJ-01 X 54069225 54069225 C T PHF8 Silent p.P15P 0.23 TCGA-AC-A3YJ-01 X 72297689 72297689 G A PABPC1L2A 3'UTR 0.16 TCGA-AC-A4ZE-01 10 104140070 104140070 T A GBF1 Missense_Mutation p.I1647N 0.33 deleterious(0) probably_damaging(0.99) TCGA-AC-A4ZE-01 10 105819929 105819929 C A COL17A1 Missense_Mutation p.M363I 0.24 unknown(0) TCGA-AC-A4ZE-01 10 16553651 16553653 CTA - PTER 3'UTR 0.60 TCGA-AC-A4ZE-01 10 26581469 26581469 C A GAD2 Silent p.R488R 0.05 TCGA-AC-A4ZE-01 10 45956852 45956852 G A MARCH8 Missense_Mutation p.H84Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-AC-A4ZE-01 10 48389065 48389065 C A RBP3 Missense_Mutation p.A605S 0.14 tolerated(0.67) benign(0.001) TCGA-AC-A4ZE-01 10 81052057 81052057 G A ZMIZ1 Missense_Mutation p.A301T 0.23 probably_damaging(0.993) TCGA-AC-A4ZE-01 11 10628317 10628317 G A MRVI1 Missense_Mutation p.A525V 0.41 tolerated(0.08) benign(0.341) TCGA-AC-A4ZE-01 11 132285965 132285965 G A OPCML 3'UTR 0.38 TCGA-AC-A4ZE-01 11 16010631 16010631 A T SOX6 Missense_Mutation p.N606K 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A4ZE-01 11 5068212 5068212 C T OR52J3 Missense_Mutation p.R153C 0.27 deleterious(0) benign(0.015) TCGA-AC-A4ZE-01 11 65363179 65363179 C T KCNK7 Missense_Mutation p.G22E 0.27 deleterious(0.02) probably_damaging(0.965) TCGA-AC-A4ZE-01 13 53422292 53422292 G A PCDH8 Missense_Mutation p.R94W 0.24 deleterious(0) possibly_damaging(0.761) TCGA-AC-A4ZE-01 14 105408535 105408535 G A AHNAK2 Missense_Mutation p.T4418M 0.36 benign(0.254) TCGA-AC-A4ZE-01 14 21502266 21502266 C A RNASE13 Missense_Mutation p.G61V 0.06 deleterious(0) probably_damaging(0.994) TCGA-AC-A4ZE-01 14 21560548 21560548 G A ZNF219 Missense_Mutation p.A303V 0.11 tolerated(0.11) probably_damaging(0.993) TCGA-AC-A4ZE-01 14 38061312 38061312 T C FOXA1 Missense_Mutation p.D226G 0.25 deleterious(0) probably_damaging(0.998) TCGA-AC-A4ZE-01 14 65035166 65035166 G A PPP1R36 Splice_Site p.X178_splice 0.37 TCGA-AC-A4ZE-01 15 101845370 101845370 C T PCSK6 3'UTR 0.16 TCGA-AC-A4ZE-01 16 68772198 68772198 A G CDH1 Splice_Site p.X17_splice 0.70 TCGA-AC-A4ZE-01 17 21730996 21730996 G A UBBP4 Missense_Mutation p.E100K 0.34 tolerated(0.09) benign(0.016) TCGA-AC-A4ZE-01 17 27591407 27591407 A G NUFIP2 3'UTR 0.05 TCGA-AC-A4ZE-01 17 36214803 36214803 G C YWHAEP7 RNA 0.39 TCGA-AC-A4ZE-01 19 1089926 1089926 G A POLR2E Missense_Mutation p.A175V 0.18 tolerated(1) benign(0.001) TCGA-AC-A4ZE-01 19 52327266 52327267 - A FPR3 Frame_Shift_Ins p.W91Mfs*9 0.20 TCGA-AC-A4ZE-01 19 7595185 7595185 C T MCOLN1 Missense_Mutation p.S458F 0.37 deleterious(0) probably_damaging(1) TCGA-AC-A4ZE-01 1 110737553 110737553 C G SLC6A17 Intron 0.21 TCGA-AC-A4ZE-01 1 149288120 149288120 C T RP11-403I13.8 RNA 0.12 TCGA-AC-A4ZE-01 1 183897307 183897307 A T RGL1 3'UTR 0.17 TCGA-AC-A4ZE-01 1 186283623 186283623 C A PRG4 3'UTR 0.23 TCGA-AC-A4ZE-01 1 202878272 202878272 A G KLHL12 Intron 0.28 TCGA-AC-A4ZE-01 1 236156953 236156953 G A NID1 Missense_Mutation p.T916M 0.19 tolerated(0.12) benign(0.007) TCGA-AC-A4ZE-01 1 3800172 3800172 C A DFFB Missense_Mutation p.T295N 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A4ZE-01 1 45792946 45792965 GCGGCAGCTAGCCCTGCGCA - HPDL Frame_Shift_Del p.Q44Rfs*145 0.32 TCGA-AC-A4ZE-01 1 89735075 89735075 A G GBP5 Missense_Mutation p.M55T 0.42 deleterious(0) probably_damaging(0.957) TCGA-AC-A4ZE-01 20 16360674 16360674 A C KIF16B Missense_Mutation p.L658R 0.07 deleterious(0.02) probably_damaging(1) TCGA-AC-A4ZE-01 20 32377326 32377326 C T ZNF341 Missense_Mutation p.T649M 0.56 tolerated(0.08) benign(0.012) TCGA-AC-A4ZE-01 20 34242590 34242590 G C RBM12 Missense_Mutation p.P219A 0.52 deleterious_low_confidence(0.01) unknown(0) TCGA-AC-A4ZE-01 2 141598620 141598620 G A LRP1B Missense_Mutation p.R1661C 0.11 possibly_damaging(0.689) TCGA-AC-A4ZE-01 2 179616245 179616245 C T TTN Intron 0.34 TCGA-AC-A4ZE-01 2 197002395 197002395 C T STK17B Missense_Mutation p.E299K 0.23 tolerated(0.86) benign(0.001) TCGA-AC-A4ZE-01 2 214016206 214016209 TCTT - IKZF2 5'Flank 0.41 TCGA-AC-A4ZE-01 2 234402041 234402041 C A USP40 Intron 0.17 TCGA-AC-A4ZE-01 3 119528987 119528987 C G NR1I2 Missense_Mutation p.Q132E 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-AC-A4ZE-01 3 134978830 134978830 G T EPHB1 3'UTR 0.42 TCGA-AC-A4ZE-01 3 167277857 167277857 C G WDR49 Missense_Mutation p.V216L 0.47 deleterious(0.01) benign(0.194) TCGA-AC-A4ZE-01 3 195491003 195491003 G A MUC4 Missense_Mutation p.R4653C 0.39 probably_damaging(0.965) TCGA-AC-A4ZE-01 3 38616870 38616870 C T SCN5A Missense_Mutation p.R1195H 0.39 deleterious(0) probably_damaging(0.948) TCGA-AC-A4ZE-01 3 38802799 38802799 C A SCN10A Missense_Mutation p.C256F 0.42 tolerated(0.1) benign(0.248) TCGA-AC-A4ZE-01 4 114303097 114303097 A G ANK2 3'UTR 0.07 TCGA-AC-A4ZE-01 4 186570653 186570653 C G SORBS2 Silent p.P279P 0.39 TCGA-AC-A4ZE-01 4 419815 419815 G A ABCA11P RNA 0.32 TCGA-AC-A4ZE-01 4 81118707 81118710 CTCC - PRDM8 Intron 0.14 TCGA-AC-A4ZE-01 5 140475415 140475415 G A PCDHB2 Silent p.P347P 0.33 TCGA-AC-A4ZE-01 5 24487413 24487413 T A CDH10 3'UTR 0.24 TCGA-AC-A4ZE-01 5 43291002 43291002 A G HMGCS1 3'UTR 0.42 TCGA-AC-A4ZE-01 5 59189382 59189382 C T PDE4D Missense_Mutation p.G23E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-AC-A4ZE-01 6 161528991 161528991 C G MAP3K4 Missense_Mutation p.A1370G 0.47 deleterious(0) probably_damaging(0.999) TCGA-AC-A4ZE-01 6 35543230 35543230 A T FKBP5 3'UTR 0.05 TCGA-AC-A4ZE-01 6 37299024 37299024 G T TBC1D22B 3'UTR 0.24 TCGA-AC-A4ZE-01 6 41010417 41010417 C G TSPO2 5'UTR 0.42 TCGA-AC-A4ZE-01 6 75801223 75801223 C A COL12A1 Nonsense_Mutation p.G2890* 0.25 TCGA-AC-A4ZE-01 7 100386936 100386936 C T ZAN Silent p.L2441L 0.48 TCGA-AC-A4ZE-01 7 149530948 149530948 C G ZNF862 5'Flank 0.42 TCGA-AC-A4ZE-01 7 27183197 27183197 G A HOXA5 Silent p.C10C 0.07 TCGA-AC-A4ZE-01 7 889628 889628 C A SUN1 Intron 0.20 TCGA-AC-A4ZE-01 7 91771895 91771895 C T LRRD1 3'Flank 0.26 TCGA-AC-A4ZE-01 8 105511592 105511592 G A LRP12 Missense_Mutation p.S143L 0.20 deleterious(0) probably_damaging(0.955) TCGA-AC-A4ZE-01 8 142202748 142202748 C T DENND3 Missense_Mutation p.R1128W 0.41 deleterious(0) possibly_damaging(0.556) TCGA-AC-A4ZE-01 8 145738042 145738042 G A RECQL4 Silent p.L956L 0.10 TCGA-AC-A4ZE-01 8 17087219 17087219 G A CNOT7 3'UTR 0.07 TCGA-AC-A4ZE-01 8 19824742 19824742 A C LPL 3'UTR 0.20 TCGA-AC-A4ZE-01 8 30705084 30705084 C T TEX15 Missense_Mutation p.A484T 0.42 tolerated(0.19) benign(0.022) TCGA-AC-A4ZE-01 8 48852177 48852177 G A PRKDC Silent p.I349I 0.40 TCGA-AC-A4ZE-01 9 23690826 23690826 T C ELAVL2 3'UTR 0.18 TCGA-AC-A4ZE-01 9 37746357 37746357 G T FRMPD1 Missense_Mutation p.G1443V 0.41 deleterious(0.02) possibly_damaging(0.873) TCGA-AC-A4ZE-01 9 85862874 85862874 C A FRMD3 Missense_Mutation p.G585W 0.13 deleterious(0) benign(0.41) TCGA-AC-A4ZE-01 X 30326863 30326863 G T NR0B1 Missense_Mutation p.H206Q 0.92 tolerated(0.22) benign(0.019) TCGA-AC-A4ZE-01 X 74494154 74494154 C T UPRT Missense_Mutation p.S22L 0.37 deleterious_low_confidence(0) benign(0.216) TCGA-AC-A5EH-01 10 118315516 118315516 T A PNLIP Silent p.T272T 0.08 TCGA-AC-A5EH-01 10 119805656 119805656 C G RAB11FIP2 Missense_Mutation p.A7P 0.15 tolerated(0.07) possibly_damaging(0.69) TCGA-AC-A5EH-01 10 134884437 134884437 G A GPR123 Missense_Mutation p.R2Q 0.11 deleterious_low_confidence(0) benign(0.417) TCGA-AC-A5EH-01 10 49951035 49951035 C T WDFY4 Missense_Mutation p.T634I 0.08 tolerated(0.05) possibly_damaging(0.544) TCGA-AC-A5EH-01 10 75525331 75525331 C T SEC24C Silent p.C450C 0.15 TCGA-AC-A5EH-01 10 7816805 7816805 A C KIN Silent p.S219S 0.28 TCGA-AC-A5EH-01 10 8111517 8111518 - A GATA3 Frame_Shift_Ins p.D336Efs*17 0.08 TCGA-AC-A5EH-01 11 111955610 111955610 C G TIMM8B 3'UTR 0.25 TCGA-AC-A5EH-01 11 27077057 27077057 C A BBOX1 Missense_Mutation p.S27Y 0.18 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 11 299462 299462 G A IFITM5 Missense_Mutation p.T10I 0.18 tolerated(0.4) benign(0.009) TCGA-AC-A5EH-01 11 36597221 36597221 G A RAG1 Silent p.E789E 0.33 TCGA-AC-A5EH-01 11 59225079 59225079 G C OR4D6 Missense_Mutation p.G216R 0.08 tolerated(0.08) probably_damaging(0.981) TCGA-AC-A5EH-01 11 62572859 62572859 C T NXF1 5'UTR 0.12 TCGA-AC-A5EH-01 11 63992040 63992040 C T TRPT1 Silent p.L161L 0.09 TCGA-AC-A5EH-01 11 65168222 65168222 G C FRMD8 Missense_Mutation p.E319Q 0.25 deleterious(0) probably_damaging(0.987) TCGA-AC-A5EH-01 11 75154265 75154265 C T GDPD5 Silent p.E288E 0.32 TCGA-AC-A5EH-01 11 76979571 76979571 T C GDPD4 Missense_Mutation p.N213S 0.25 deleterious(0) probably_damaging(0.996) TCGA-AC-A5EH-01 11 85375464 85375464 C G CREBZF Silent p.A152A 0.11 TCGA-AC-A5EH-01 11 85737410 85737410 C T PICALM Splice_Site p.X92_splice 0.18 TCGA-AC-A5EH-01 11 88241592 88241592 T C GRM5 3'UTR 0.16 TCGA-AC-A5EH-01 12 105381963 105381965 TCA - C12orf45 In_Frame_Del p.I46del 0.26 TCGA-AC-A5EH-01 12 12672818 12672818 G A DUSP16 Silent p.F115F 0.42 TCGA-AC-A5EH-01 12 133438213 133438213 C G CHFR Silent p.G209G 0.33 TCGA-AC-A5EH-01 12 20876178 20876178 C A SLCO1C1 Missense_Mutation p.N392K 0.43 tolerated(0.05) probably_damaging(0.997) TCGA-AC-A5EH-01 12 22001151 22001151 C G ABCC9 Missense_Mutation p.E933D 0.22 deleterious(0.02) benign(0.16) TCGA-AC-A5EH-01 12 48367202 48367202 G T COL2A1 Silent p.V1484V 0.12 TCGA-AC-A5EH-01 12 53605180 53605180 G A RARG 3'UTR 0.14 TCGA-AC-A5EH-01 12 6630254 6630254 T A NCAPD2 Missense_Mutation p.N564K 0.22 tolerated(0.2) benign(0.004) TCGA-AC-A5EH-01 12 80707310 80707310 C G OTOGL Missense_Mutation p.L1160V 0.35 tolerated(0.06) probably_damaging(0.982) TCGA-AC-A5EH-01 12 80935422 80935422 C T PTPRQ Silent p.N1077N 0.23 TCGA-AC-A5EH-01 12 81732974 81732974 G A PPFIA2 Nonsense_Mutation p.R845* 0.30 TCGA-AC-A5EH-01 13 109445911 109445911 A G MYO16 Missense_Mutation p.S200G 0.24 deleterious(0.02) benign(0.314) TCGA-AC-A5EH-01 13 41767027 41767027 C A KBTBD7 Missense_Mutation p.C456F 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-AC-A5EH-01 13 51936957 51936957 C G SERPINE3 3'Flank 0.25 TCGA-AC-A5EH-01 13 53049032 53049032 T G CKAP2 Missense_Mutation p.V603G 0.33 deleterious(0) benign(0.087) TCGA-AC-A5EH-01 13 93879553 93879553 G A GPC6 5'UTR 0.40 TCGA-AC-A5EH-01 14 103932071 103932071 G C MARK3 Missense_Mutation p.G240R 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 14 107218848 107218848 G A IGHV3-74 Missense_Mutation p.P60L 0.26 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-AC-A5EH-01 14 20020012 20020012 G C POTEM Missense_Mutation p.P70R 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AC-A5EH-01 14 20794633 20794633 T A CCNB1IP1 Intron 0.13 TCGA-AC-A5EH-01 14 21216054 21216054 T G EDDM3A Missense_Mutation p.C105W 0.08 deleterious(0) probably_damaging(0.998) TCGA-AC-A5EH-01 14 21623712 21623712 A C OR5AU1 Missense_Mutation p.F158C 0.22 tolerated(0.09) probably_damaging(0.956) TCGA-AC-A5EH-01 14 22789079 22789079 G T TRAV41 Missense_Mutation p.A98S 0.26 tolerated(0.92) probably_damaging(0.931) TCGA-AC-A5EH-01 14 36986234 36986234 A G NKX2-1 3'UTR 0.09 TCGA-AC-A5EH-01 14 51243816 51243816 G T NIN Missense_Mutation p.Q173K 0.10 tolerated(0.14) benign(0.041) TCGA-AC-A5EH-01 14 51404521 51404521 C T PYGL Missense_Mutation p.G93D 0.11 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 14 67671361 67671361 C G FAM71D Missense_Mutation p.S156C 0.31 deleterious(0) possibly_damaging(0.905) TCGA-AC-A5EH-01 14 72055931 72055931 G C SIPA1L1 Missense_Mutation p.E448Q 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-AC-A5EH-01 14 74825096 74825096 C A VRTN Nonsense_Mutation p.S537* 0.19 TCGA-AC-A5EH-01 14 74966031 74966031 C A LTBP2 3'UTR 0.32 TCGA-AC-A5EH-01 15 23444037 23444037 G T AC100757.1 5'Flank 0.08 TCGA-AC-A5EH-01 15 30024834 30024834 C T TJP1 Splice_Site p.X641_splice 0.20 TCGA-AC-A5EH-01 15 37183628 37183628 A T MEIS2 3'UTR 0.21 TCGA-AC-A5EH-01 15 43044687 43044687 A G TTBK2 Silent p.C919C 0.42 TCGA-AC-A5EH-01 15 43579533 43579533 G A TGM7 Silent p.G270G 0.17 TCGA-AC-A5EH-01 15 43892280 43892280 G A STRC Missense_Mutation p.S1706F 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-AC-A5EH-01 15 45421674 45421674 G A DUOXA1 5'UTR 0.30 TCGA-AC-A5EH-01 15 77472354 77472354 C G PEAK1 Missense_Mutation p.A639P 0.25 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EH-01 15 81041912 81041912 A G ABHD17C Missense_Mutation p.T217A 0.30 deleterious(0.02) possibly_damaging(0.627) TCGA-AC-A5EH-01 15 88678430 88678430 G T NTRK3 Missense_Mutation p.T369N 0.28 deleterious(0) possibly_damaging(0.893) TCGA-AC-A5EH-01 15 99504797 99504797 G A IGF1R 3'UTR 0.15 TCGA-AC-A5EH-01 16 11001627 11001627 G T CIITA Missense_Mutation p.G760W 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 16 16150133 16150133 G A ABCC1 Nonsense_Mutation p.W553* 0.28 TCGA-AC-A5EH-01 16 2079703 2079703 C A SLC9A3R2 Missense_Mutation p.L112I 0.10 tolerated(0.53) benign(0.045) TCGA-AC-A5EH-01 16 2166035 2166035 C A PKD1 Missense_Mutation p.A603S 0.29 benign(0.033) TCGA-AC-A5EH-01 16 29896968 29896968 G C SEZ6L2 Silent p.L437L 0.37 TCGA-AC-A5EH-01 16 30718605 30718606 - T SRCAP Frame_Shift_Ins p.W137Lfs*14 0.22 TCGA-AC-A5EH-01 16 3900661 3900661 G T CREBBP Silent p.P145P 0.41 TCGA-AC-A5EH-01 16 737252 737252 T A WDR24 Missense_Mutation p.D275V 0.21 deleterious(0) probably_damaging(0.991) TCGA-AC-A5EH-01 16 81187874 81187874 C G PKD1L2 RNA 0.44 TCGA-AC-A5EH-01 17 29562791 29562791 G T NF1 Splice_Site p.X1290_splice 0.22 TCGA-AC-A5EH-01 17 36887616 36887616 T C CISD3 Missense_Mutation p.L43P 0.14 tolerated(0.29) possibly_damaging(0.832) TCGA-AC-A5EH-01 17 41228540 41228540 A G BRCA1 Silent p.S1504S 0.49 TCGA-AC-A5EH-01 17 48271770 48271770 G A COL1A1 Silent p.G518G 0.57 TCGA-AC-A5EH-01 17 48559512 48559512 C T RSAD1 Missense_Mutation p.R179W 0.25 deleterious(0.04) possibly_damaging(0.846) TCGA-AC-A5EH-01 17 48917995 48917995 A T WFIKKN2 Missense_Mutation p.K449M 0.14 deleterious(0) probably_damaging(0.982) TCGA-AC-A5EH-01 17 56536233 56536233 A T HSF5 Missense_Mutation p.I539N 0.30 deleterious(0.01) possibly_damaging(0.858) TCGA-AC-A5EH-01 17 65740038 65740038 C T NOL11 3'UTR 0.29 TCGA-AC-A5EH-01 17 65905758 65905759 - A BPTF Frame_Shift_Ins p.I961Nfs*6 0.38 TCGA-AC-A5EH-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.46 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 17 76135316 76135316 G C TMC8 Missense_Mutation p.V633L 0.28 tolerated(0.1) benign(0.006) TCGA-AC-A5EH-01 17 78320862 78320862 G T RNF213 Missense_Mutation p.E2909D 0.17 possibly_damaging(0.494) TCGA-AC-A5EH-01 17 8383634 8383634 C T MYH10 Silent p.V1797V 0.24 TCGA-AC-A5EH-01 18 23713980 23713980 C A PSMA8 Missense_Mutation p.H17Q 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A5EH-01 18 3879801 3879801 G A DLGAP1 Missense_Mutation p.R90C 0.24 deleterious(0.04) benign(0.163) TCGA-AC-A5EH-01 18 47527678 47527678 C T MYO5B Missense_Mutation p.A187T 0.17 tolerated(0.08) benign(0.064) TCGA-AC-A5EH-01 19 14743742 14743742 T C EMR3 Missense_Mutation p.Q545R 0.33 tolerated(0.15) benign(0.09) TCGA-AC-A5EH-01 19 16593292 16593299 TTCTCAAA - CALR3 Frame_Shift_Del p.F294Hfs*18 0.44 TCGA-AC-A5EH-01 19 17774364 17774364 T G UNC13A Missense_Mutation p.Y179S 0.35 deleterious_low_confidence(0.01) benign(0.03) TCGA-AC-A5EH-01 19 1986480 1986480 G C BTBD2 3'UTR 0.22 TCGA-AC-A5EH-01 19 22156813 22156813 G T ZNF208 Nonsense_Mutation p.Y341* 0.56 TCGA-AC-A5EH-01 19 36109547 36109547 G C HAUS5 Missense_Mutation p.R321P 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-AC-A5EH-01 19 3620798 3620798 G T CACTIN Silent p.A215A 0.23 TCGA-AC-A5EH-01 19 41800328 41800328 A C HNRNPUL1 Missense_Mutation p.N451T 0.27 deleterious(0.04) unknown(0) TCGA-AC-A5EH-01 19 46834472 46834472 C G HIF3A Missense_Mutation p.P591R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A5EH-01 19 48949235 48949235 C T GRWD1 5'UTR 0.30 TCGA-AC-A5EH-01 19 53913025 53913025 G T ZNF765 3'UTR 0.13 TCGA-AC-A5EH-01 19 53913026 53913026 A C ZNF765 3'UTR 0.13 TCGA-AC-A5EH-01 19 5456653 5456653 G C ZNRF4 Missense_Mutation p.W384S 0.18 deleterious(0.01) probably_damaging(0.961) TCGA-AC-A5EH-01 19 56243877 56243877 A T NLRP9 Nonsense_Mutation p.C440* 0.27 TCGA-AC-A5EH-01 19 875298 875298 C A MED16 Missense_Mutation p.D573Y 0.15 deleterious(0) probably_damaging(0.961) TCGA-AC-A5EH-01 19 9296887 9296887 C G OR7D2 Missense_Mutation p.L144V 0.16 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-AC-A5EH-01 1 12202521 12202521 A T TNFRSF8 Missense_Mutation p.D574V 0.16 deleterious(0) probably_damaging(0.951) TCGA-AC-A5EH-01 1 160832438 160832438 G T CD244 Silent p.L10L 0.18 TCGA-AC-A5EH-01 1 160969767 160969767 A T F11R Missense_Mutation p.V198D 0.39 deleterious(0.01) possibly_damaging(0.714) TCGA-AC-A5EH-01 1 161026308 161026308 G A ARHGAP30 Missense_Mutation p.S72L 0.11 deleterious(0.04) benign(0.071) TCGA-AC-A5EH-01 1 171086627 171086627 G A FMO3 3'UTR 0.39 TCGA-AC-A5EH-01 1 171755217 171755217 A T METTL13 Missense_Mutation p.Q371L 0.10 deleterious(0) possibly_damaging(0.54) TCGA-AC-A5EH-01 1 179044596 179044596 G T FAM20B 3'UTR 0.44 TCGA-AC-A5EH-01 1 206635834 206635834 A G SRGAP2 3'UTR 0.13 TCGA-AC-A5EH-01 1 241731937 241731937 G A KMO Missense_Mutation p.G316E 0.32 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 1 241964626 241964626 T A WDR64 3'UTR 0.41 TCGA-AC-A5EH-01 1 248570403 248570403 T G OR2T1 Nonstop_Mutation p.*370Gext*? 0.30 TCGA-AC-A5EH-01 1 25775352 25775352 G C TMEM57 Silent p.L92L 0.33 TCGA-AC-A5EH-01 1 32700054 32700054 G A EIF3I 3'Flank 0.30 TCGA-AC-A5EH-01 1 44441519 44441519 T C ATP6V0B Missense_Mutation p.W39R 0.12 tolerated(0.26) benign(0.012) TCGA-AC-A5EH-01 1 6166465 6166465 G C CHD5 Silent p.P1949P 0.33 TCGA-AC-A5EH-01 1 65298882 65298882 G C RAVER2 3'UTR 0.20 TCGA-AC-A5EH-01 1 67243195 67243195 G T TCTEX1D1 3'UTR 0.26 TCGA-AC-A5EH-01 20 43547652 43547652 C T PABPC1L Silent p.D203D 0.06 TCGA-AC-A5EH-01 20 44681681 44681681 C T SLC12A5 Silent p.F844F 0.21 TCGA-AC-A5EH-01 20 62199860 62199860 C T HELZ2 Silent p.A527A 0.06 TCGA-AC-A5EH-01 20 896547 896547 A G ANGPT4 Splice_Site p.X103_splice 0.27 TCGA-AC-A5EH-01 21 11026788 11026788 A G BAGE2 RNA 0.08 TCGA-AC-A5EH-01 21 36259171 36259171 C A RUNX1 Missense_Mutation p.R107L 0.06 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EH-01 21 45953581 45953581 G A TSPEAR Missense_Mutation p.L177F 0.13 tolerated(0.12) benign(0.004) TCGA-AC-A5EH-01 22 17976444 17976444 A G CECR2 Silent p.T36T 0.30 TCGA-AC-A5EH-01 22 22730849 22730849 G A IGLV5-45 Missense_Mutation p.C115Y 0.11 deleterious(0.01) possibly_damaging(0.795) TCGA-AC-A5EH-01 22 24829415 24829415 G T ADORA2A Missense_Mutation p.A15S 0.20 tolerated(0.05) benign(0.01) TCGA-AC-A5EH-01 22 31583127 31583127 G A RNF185 Missense_Mutation p.S16N 0.12 tolerated(0.17) unknown(0) TCGA-AC-A5EH-01 22 36894315 36894315 C A FOXRED2 Intron 0.43 TCGA-AC-A5EH-01 22 38150910 38150910 C G TRIOBP Silent p.T1802T 0.19 TCGA-AC-A5EH-01 22 39473235 39473235 C G APOBEC3G 5'UTR 0.40 TCGA-AC-A5EH-01 22 40140261 40140261 G T ENTHD1 Missense_Mutation p.S416Y 0.23 deleterious(0) probably_damaging(0.914) TCGA-AC-A5EH-01 2 10937859 10937859 T G PDIA6 Silent p.T62T 0.09 TCGA-AC-A5EH-01 2 121995228 121995228 T C TFCP2L1 Missense_Mutation p.Q325R 0.21 tolerated(0.06) benign(0.018) TCGA-AC-A5EH-01 2 135260481 135260481 G A TMEM163 Silent p.L182L 0.25 TCGA-AC-A5EH-01 2 168114950 168114950 A T XIRP2 3'UTR 0.18 TCGA-AC-A5EH-01 2 170031784 170031784 C T LRP2 Missense_Mutation p.G3563S 0.25 probably_damaging(0.998) TCGA-AC-A5EH-01 2 177135019 177135019 C T MTX2 Intron 0.31 TCGA-AC-A5EH-01 2 183817883 183817883 T C NCKAP1 Missense_Mutation p.D783G 0.10 deleterious(0) probably_damaging(0.977) TCGA-AC-A5EH-01 2 203421091 203421091 T C BMPR2 Silent p.N901N 0.18 TCGA-AC-A5EH-01 2 241390176 241390176 G A AC110619.2 Silent p.V77V 0.28 TCGA-AC-A5EH-01 2 36986166 36986166 C A VIT Nonsense_Mutation p.S155* 0.29 TCGA-AC-A5EH-01 3 108705760 108705760 G A MORC1 Nonsense_Mutation p.Q742* 0.21 TCGA-AC-A5EH-01 3 113003409 113003409 C T BOC Nonsense_Mutation p.Q961* 0.15 TCGA-AC-A5EH-01 3 122274209 122274209 G T PARP9 Missense_Mutation p.T305N 0.23 deleterious(0.04) benign(0.171) TCGA-AC-A5EH-01 3 125828949 125828949 C T ALDH1L1 Missense_Mutation p.E739K 0.27 tolerated(0.15) benign(0.125) TCGA-AC-A5EH-01 3 128580685 128580685 G C RP11-723O4.9 5'Flank 0.30 TCGA-AC-A5EH-01 3 129234420 129234420 C T IFT122 Silent p.F1132F 0.33 TCGA-AC-A5EH-01 3 130188288 130188288 C A COL6A5 Silent p.I2480I 0.12 TCGA-AC-A5EH-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-AC-A5EH-01 3 186944266 186944266 G A MASP1 Missense_Mutation p.S495L 0.11 tolerated(0.12) benign(0.003) TCGA-AC-A5EH-01 3 44826382 44826382 T A KIF15 Missense_Mutation p.I136N 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EH-01 3 48538679 48538679 C T SHISA5 Missense_Mutation p.E42K 0.12 tolerated(0.99) benign(0.027) TCGA-AC-A5EH-01 3 48788651 48788651 T G PRKAR2A 3'UTR 0.30 TCGA-AC-A5EH-01 3 49680077 49680077 G C BSN Missense_Mutation p.G337A 0.13 unknown(0) TCGA-AC-A5EH-01 3 49924860 49924860 C A MST1R Missense_Mutation p.M1361I 0.29 deleterious(0.05) benign(0.001) TCGA-AC-A5EH-01 3 52257959 52257959 G C TLR9 Missense_Mutation p.L279V 0.27 deleterious(0) possibly_damaging(0.839) TCGA-AC-A5EH-01 3 68788321 68788321 G A FAM19A4 Missense_Mutation p.H106Y 0.45 deleterious(0) possibly_damaging(0.904) TCGA-AC-A5EH-01 3 78676606 78676606 G A ROBO1 Missense_Mutation p.A1247V 0.31 tolerated(0.08) possibly_damaging(0.874) TCGA-AC-A5EH-01 4 1087508 1087508 G C RNF212 Intron 0.13 TCGA-AC-A5EH-01 4 123192211 123192211 C T KIAA1109 Missense_Mutation p.P2511L 0.28 probably_damaging(0.94) TCGA-AC-A5EH-01 4 144474514 144474514 C T SMARCA5 3'UTR 0.20 TCGA-AC-A5EH-01 4 146056770 146056772 AAG - OTUD4 3'UTR 0.43 TCGA-AC-A5EH-01 4 170037434 170037434 C G SH3RF1 Missense_Mutation p.D709H 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-AC-A5EH-01 4 183959775 183959775 G A FAM92A1P2 RNA 0.50 TCGA-AC-A5EH-01 4 680419 680419 C T MFSD7 Missense_Mutation p.E66K 0.11 tolerated(0.31) benign(0.005) TCGA-AC-A5EH-01 4 77038820 77038820 C A NUP54 Missense_Mutation p.K464N 0.30 deleterious(0) possibly_damaging(0.873) TCGA-AC-A5EH-01 5 118865665 118865665 C G HSD17B4 Missense_Mutation p.T640R 0.24 tolerated(0.34) benign(0.142) TCGA-AC-A5EH-01 5 139507144 139507144 G A IGIP 5'UTR 0.34 TCGA-AC-A5EH-01 5 140203199 140203199 G A PCDHA5 Silent p.A613A 0.28 TCGA-AC-A5EH-01 5 140475626 140475626 G A PCDHB2 Missense_Mutation p.E418K 0.10 deleterious_low_confidence(0.03) benign(0.262) TCGA-AC-A5EH-01 5 172561721 172561721 A G CREBRF 3'UTR 0.13 TCGA-AC-A5EH-01 5 174948932 174948932 G T SFXN1 Missense_Mutation p.W262L 0.33 tolerated(0.2) benign(0.008) TCGA-AC-A5EH-01 5 31294346 31294346 C T CDH6 Missense_Mutation p.P169L 0.12 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EH-01 5 7707849 7707849 G A ADCY2 Silent p.E433E 0.10 TCGA-AC-A5EH-01 6 129794470 129794470 G T LAMA2 Missense_Mutation p.G2471V 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A5EH-01 6 152708494 152708494 G C SYNE1 Missense_Mutation p.Q2734E 0.18 benign(0.04) TCGA-AC-A5EH-01 6 161152179 161152180 - A PLG Frame_Shift_Ins p.C454Mfs*59 0.12 TCGA-AC-A5EH-01 6 30782254 30782254 G T LINC00243 RNA 0.12 TCGA-AC-A5EH-01 6 31713097 31713097 G T MSH5 Splice_Site p.X256_splice 0.26 TCGA-AC-A5EH-01 6 348111 348111 G C DUSP22 Missense_Mutation p.G91A 0.17 deleterious(0) probably_damaging(0.989) TCGA-AC-A5EH-01 6 80745032 80745032 G C TTK Missense_Mutation p.D608H 0.29 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EH-01 7 117365286 117365286 C T CTTNBP2 Missense_Mutation p.V1361I 0.26 tolerated(0.19) benign(0.021) TCGA-AC-A5EH-01 7 129658438 129658438 C G ZC3HC1 3'UTR 0.25 TCGA-AC-A5EH-01 7 142223866 142223866 C T TRBV11-1 Missense_Mutation p.A101T 0.16 tolerated(1) benign(0.035) TCGA-AC-A5EH-01 7 150390169 150390169 C A GIMAP2 Silent p.A265A 0.24 TCGA-AC-A5EH-01 7 150733195 150733195 G A ABCB8 Missense_Mutation p.R350Q 0.23 tolerated(0.16) benign(0.001) TCGA-AC-A5EH-01 7 151845841 151845841 T A KMT2C Nonsense_Mutation p.K4391* 0.41 TCGA-AC-A5EH-01 7 152132815 152132815 G C KMT2C Silent p.P19P 0.33 TCGA-AC-A5EH-01 7 2740234 2740234 C T AMZ1 Missense_Mutation p.P50L 0.28 deleterious(0.01) benign(0.059) TCGA-AC-A5EH-01 7 76797009 76797009 A G CCDC146 Silent p.T8T 0.18 TCGA-AC-A5EH-01 7 99092017 99092017 C A ZNF394 Missense_Mutation p.G274V 0.17 tolerated(0.55) possibly_damaging(0.708) TCGA-AC-A5EH-01 8 36793260 36793260 C A KCNU1 Missense_Mutation p.S1091Y 0.49 tolerated_low_confidence(1) benign(0.002) TCGA-AC-A5EH-01 8 42698237 42698237 T C THAP1 Translation_Start_Site p.M1? 0.07 deleterious(0) probably_damaging(0.97) TCGA-AC-A5EH-01 8 99162829 99162829 G A POP1 Silent p.A673A 0.43 TCGA-AC-A5EH-01 9 108072014 108072014 T C SLC44A1 Missense_Mutation p.C46R 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A5EH-01 9 117798471 117798471 C G TNC Silent p.L1854L 0.42 TCGA-AC-A5EH-01 9 121971147 121971147 C A BRINP1 Missense_Mutation p.W332L 0.41 deleterious(0) possibly_damaging(0.901) TCGA-AC-A5EH-01 9 131680240 131680240 C T LRRC8A 3'UTR 0.50 TCGA-AC-A5EH-01 9 36170435 36170435 C A CCIN Missense_Mutation p.D312E 0.54 tolerated(1) benign(0.002) TCGA-AC-A5EH-01 9 37737221 37737221 C T FRMPD1 Silent p.H510H 0.14 TCGA-AC-A5EH-01 9 40705594 40705594 T G SPATA31A3 Missense_Mutation p.V1084G 0.59 tolerated(0.36) benign(0) TCGA-AC-A5EH-01 9 94984955 94984955 C T IARS Splice_Site p.X1185_splice 0.22 TCGA-AC-A5EH-01 X 10176285 10176285 C G CLCN4 Silent p.L348L 0.14 TCGA-AC-A5EH-01 X 118221386 118221386 T G KIAA1210 Missense_Mutation p.E1269D 0.44 deleterious(0.04) possibly_damaging(0.703) TCGA-AC-A5EH-01 X 152720419 152720419 A T HAUS7 Intron 0.25 TCGA-AC-A5EH-01 X 153628161 153628161 A C RPL10 Missense_Mutation p.I70L 0.43 deleterious(0) possibly_damaging(0.45) TCGA-AC-A5EH-01 X 154090058 154090058 C T F8 Missense_Mutation p.A2220T 0.38 tolerated(0.08) benign(0.091) TCGA-AC-A5EH-01 X 1734119 1734119 T C ASMT Silent p.Y9Y 0.08 TCGA-AC-A5EH-01 X 224127 224127 C T GTPBP6 Missense_Mutation p.G214R 0.20 deleterious(0.01) possibly_damaging(0.572) TCGA-AC-A5EI-01 10 102750656 102750656 C T C10orf2 Silent p.V541V 0.32 TCGA-AC-A5EI-01 10 116853435 116853435 G T ATRNL1 5'UTR 0.49 TCGA-AC-A5EI-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.13 TCGA-AC-A5EI-01 11 3114834 3114834 C G OSBPL5 Silent p.P623P 0.43 TCGA-AC-A5EI-01 11 60670977 60670977 G A PRPF19 Missense_Mutation p.S67L 0.14 deleterious(0.02) possibly_damaging(0.783) TCGA-AC-A5EI-01 11 83166309 83166309 C T DLG2 3'Flank 0.12 TCGA-AC-A5EI-01 11 94801915 94801915 C G SRSF8 3'UTR 0.48 TCGA-AC-A5EI-01 14 24886207 24886207 C T NYNRIN Missense_Mutation p.S1751F 0.51 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-AC-A5EI-01 14 42373607 42373608 - T LRFN5 3'UTR 0.28 TCGA-AC-A5EI-01 14 57670739 57670739 G A EXOC5 3'UTR 0.23 TCGA-AC-A5EI-01 15 31822945 31822945 C T OTUD7A Missense_Mutation p.G206E 0.11 deleterious(0) probably_damaging(1) TCGA-AC-A5EI-01 15 34640201 34640201 G T NUTM1 Missense_Mutation p.M16I 0.33 deleterious(0.04) benign(0.389) TCGA-AC-A5EI-01 16 67070577 67070578 - T CBFB Frame_Shift_Ins p.P70Sfs*13 0.10 TCGA-AC-A5EI-01 17 26116700 26116700 T C NOS2 Missense_Mutation p.D42G 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.589) TCGA-AC-A5EI-01 17 6337388 6337388 C T AIPL1 Missense_Mutation p.D43N 0.11 tolerated(0.21) benign(0.162) TCGA-AC-A5EI-01 17 7826204 7826204 A T KCNAB3 3'UTR 0.65 TCGA-AC-A5EI-01 18 30903505 30903509 TTCTT - CCDC178 Frame_Shift_Del p.K323Rfs*3 0.45 TCGA-AC-A5EI-01 19 18507240 18507240 T C LRRC25 Silent p.G178G 0.28 TCGA-AC-A5EI-01 19 38377603 38377603 C G WDR87 Missense_Mutation p.W2197C 0.31 benign(0.128) TCGA-AC-A5EI-01 19 51462363 51462363 C T KLK6 3'UTR 0.22 TCGA-AC-A5EI-01 19 54417817 54417817 C T CACNG7 Missense_Mutation p.T87M 0.29 deleterious(0.03) possibly_damaging(0.893) TCGA-AC-A5EI-01 19 7542193 7542203 GCCGGCCCACA - PEX11G Frame_Shift_Del p.L204Pfs*82 0.33 TCGA-AC-A5EI-01 19 758149 758149 G A MISP Silent p.P401P 0.33 TCGA-AC-A5EI-01 1 156712368 156712368 T A HDGF 3'Flank 0.13 TCGA-AC-A5EI-01 1 22929124 22929124 C T EPHA8 3'UTR 0.14 TCGA-AC-A5EI-01 1 237777439 237777439 C T RYR2 Missense_Mutation p.R1671W 0.51 probably_damaging(0.999) TCGA-AC-A5EI-01 22 50659708 50659708 C T TUBGCP6 Missense_Mutation p.G1027E 0.29 tolerated(0.24) benign(0.011) TCGA-AC-A5EI-01 2 166929997 166929997 G A SCN1A Silent p.D45D 0.45 TCGA-AC-A5EI-01 2 239139990 239139990 C T AC016757.3 5'UTR 0.41 TCGA-AC-A5EI-01 3 114070183 114070183 A T ZBTB20 Missense_Mutation p.Y248N 0.49 deleterious_low_confidence(0.04) probably_damaging(0.969) TCGA-AC-A5EI-01 4 146058951 146058953 TGT - OTUD4 In_Frame_Del p.T927del 0.53 TCGA-AC-A5EI-01 4 184239714 184239714 A G CLDN22 3'UTR 0.31 TCGA-AC-A5EI-01 4 47597910 47597910 C T CORIN Missense_Mutation p.G986D 0.13 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EI-01 4 99955394 99955394 G T METAP1 Silent p.A60A 0.52 TCGA-AC-A5EI-01 5 124036959 124036959 C T ZNF608 Missense_Mutation p.D304N 0.15 deleterious(0.01) probably_damaging(0.984) TCGA-AC-A5EI-01 5 1416253 1416253 C T SLC6A3 Missense_Mutation p.A331T 0.07 tolerated(0.05) benign(0.409) TCGA-AC-A5EI-01 5 67591144 67591153 ATACTTGATG - PIK3R1 Splice_Site p.X579_splice 0.56 TCGA-AC-A5EI-01 5 7869250 7869250 G A MTRR Missense_Mutation p.G2S 0.08 tolerated_low_confidence(0.14) benign(0.016) TCGA-AC-A5EI-01 6 11185729 11185729 T C NEDD9 Missense_Mutation p.N724S 0.58 tolerated(0.16) possibly_damaging(0.493) TCGA-AC-A5EI-01 6 118029810 118029811 TT A NUS1 3'UTR 0.08 TCGA-AC-A5EI-01 6 161552000 161552000 T A AGPAT4 3'UTR 0.45 TCGA-AC-A5EI-01 7 107823310 107823310 G A NRCAM Missense_Mutation p.R787C 0.39 deleterious(0) probably_damaging(1) TCGA-AC-A5EI-01 7 138344632 138344632 A G SVOPL Silent p.C149C 0.10 TCGA-AC-A5EI-01 7 47879188 47879188 C G PKD1L1 Missense_Mutation p.W1875C 0.47 deleterious(0) probably_damaging(1) TCGA-AC-A5EI-01 7 72416136 72416136 C G POM121 Missense_Mutation p.P916A 0.34 tolerated(0.19) probably_damaging(0.994) TCGA-AC-A5EI-01 8 39111964 39111964 C T ADAM32 Missense_Mutation p.S645L 0.21 tolerated(0.67) benign(0.09) TCGA-AC-A5EI-01 9 14806824 14806824 C T FREM1 Missense_Mutation p.E1037K 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A5EI-01 9 8317484 8317484 G A PTPRD 3'UTR 0.14 TCGA-AC-A5EI-01 9 91262306 91262306 A T RP13-60M5.2 RNA 0.17 TCGA-AC-A5EI-01 X 18925196 18925196 G A PHKA2 Missense_Mutation p.S846L 0.11 tolerated(0.1) possibly_damaging(0.547) TCGA-AC-A5EI-01 X 88008507 88008507 T A CPXCR1 Missense_Mutation p.I31K 0.16 tolerated(0.22) benign(0.034) TCGA-AC-A5XS-01 10 102778591 102778591 G C PDZD7 Missense_Mutation p.L438V 0.19 tolerated(0.44) benign(0.175) TCGA-AC-A5XS-01 10 105147961 105147961 G C TAF5 Missense_Mutation p.G795A 0.14 deleterious(0.03) probably_damaging(0.922) TCGA-AC-A5XS-01 10 105148193 105148193 G A TAF5 3'UTR 0.35 TCGA-AC-A5XS-01 10 106159178 106159178 G A CCDC147 Missense_Mutation p.E579K 0.28 tolerated(0.33) benign(0.005) TCGA-AC-A5XS-01 10 128935725 128935725 C T FAM196A 3'UTR 0.33 TCGA-AC-A5XS-01 10 18250621 18250621 C T SLC39A12 Nonsense_Mutation p.Q125* 0.24 TCGA-AC-A5XS-01 10 27459990 27459990 G C MASTL Missense_Mutation p.R701T 0.18 tolerated(0.53) benign(0.071) TCGA-AC-A5XS-01 10 35333605 35333605 C T CUL2 Splice_Site p.X221_splice 0.22 TCGA-AC-A5XS-01 10 43882982 43882982 T A HNRNPF Silent p.G117G 0.25 TCGA-AC-A5XS-01 10 44052785 44052785 G A ZNF239 Missense_Mutation p.S248L 0.30 deleterious(0.01) possibly_damaging(0.572) TCGA-AC-A5XS-01 10 47668693 47668693 G T ANTXRL Missense_Mutation p.D213Y 0.23 deleterious(0) possibly_damaging(0.895) TCGA-AC-A5XS-01 10 71860020 71860020 C T H2AFY2 Missense_Mutation p.R249C 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-AC-A5XS-01 10 72576606 72576606 G A SGPL1 5'UTR 0.18 TCGA-AC-A5XS-01 10 74100860 74100860 C T DNAJB12 Missense_Mutation p.D210N 0.34 tolerated(0.12) benign(0.007) TCGA-AC-A5XS-01 10 75504170 75504170 G A SEC24C 5'UTR 0.29 TCGA-AC-A5XS-01 10 75572532 75572532 G A CAMK2G 3'UTR 0.21 TCGA-AC-A5XS-01 10 93220311 93220311 G A HECTD2 Silent p.V132V 0.40 TCGA-AC-A5XS-01 10 99379352 99379352 C T MORN4 Nonsense_Mutation p.W20* 0.12 TCGA-AC-A5XS-01 11 120200956 120200956 G A TMEM136 Missense_Mutation p.G179E 0.30 deleterious(0.02) possibly_damaging(0.57) TCGA-AC-A5XS-01 11 120350701 120350701 C G ARHGEF12 Missense_Mutation p.L1267V 0.20 deleterious_low_confidence(0) benign(0.405) TCGA-AC-A5XS-01 11 120352198 120352198 G C ARHGEF12 Missense_Mutation p.E1489D 0.11 tolerated_low_confidence(0.28) benign(0.003) TCGA-AC-A5XS-01 11 124189782 124189782 G C OR8D2 Missense_Mutation p.F104L 0.24 deleterious(0) probably_damaging(0.97) TCGA-AC-A5XS-01 11 124748572 124748572 G T ROBO3 Missense_Mutation p.R1138L 0.25 deleterious(0.01) benign(0.131) TCGA-AC-A5XS-01 11 126139304 126139304 G A FOXRED1 Intron 0.37 TCGA-AC-A5XS-01 11 1268573 1268573 C G MUC5B Missense_Mutation p.S3488C 0.21 unknown(0) TCGA-AC-A5XS-01 11 134131548 134131548 C T ACAD8 Intron 0.29 TCGA-AC-A5XS-01 11 1576391 1576391 G C DUSP8 3'UTR 0.31 TCGA-AC-A5XS-01 11 17615264 17615264 G A OTOG Silent p.Q1095Q 0.18 TCGA-AC-A5XS-01 11 2170416 2170416 G A INS-IGF2 Missense_Mutation p.S116F 0.30 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-AC-A5XS-01 11 36472831 36472831 C G PRR5L Missense_Mutation p.P220A 0.22 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 11 36598557 36598557 C G RAG1 3'UTR 0.13 TCGA-AC-A5XS-01 11 400018 400018 G A PKP3 Missense_Mutation p.R442K 0.18 tolerated(0.2) benign(0.289) TCGA-AC-A5XS-01 11 47267155 47267155 G A ACP2 Intron 0.24 TCGA-AC-A5XS-01 11 47267161 47267161 G A ACP2 Intron 0.25 TCGA-AC-A5XS-01 11 47296127 47296127 G C MADD Missense_Mutation p.D26H 0.16 deleterious(0.03) possibly_damaging(0.558) TCGA-AC-A5XS-01 11 5246791 5246791 G A HBB 3'UTR 0.28 TCGA-AC-A5XS-01 11 5322639 5322639 C T OR51B4 Missense_Mutation p.D180N 0.24 deleterious(0.02) probably_damaging(0.978) TCGA-AC-A5XS-01 11 57314114 57314114 C T SMTNL1 Silent p.F461F 0.30 TCGA-AC-A5XS-01 11 57510443 57510443 G C C11orf31 3'Flank 0.16 TCGA-AC-A5XS-01 11 58384237 58384237 C T ZFP91 Missense_Mutation p.S384F 0.26 deleterious(0) probably_damaging(0.949) TCGA-AC-A5XS-01 11 607938 607938 G A PHRF1 Missense_Mutation p.E827K 0.26 deleterious(0) probably_damaging(0.98) TCGA-AC-A5XS-01 11 63585739 63585739 G A C11orf84 Missense_Mutation p.R170K 0.20 tolerated(0.5) benign(0.002) TCGA-AC-A5XS-01 11 63670150 63670150 G C MARK2 Missense_Mutation p.E438Q 0.17 tolerated(0.23) benign(0.006) TCGA-AC-A5XS-01 11 6497560 6497560 G T ARFIP2 3'UTR 0.19 TCGA-AC-A5XS-01 11 65380777 65380777 C T MAP3K11 Missense_Mutation p.D151N 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-AC-A5XS-01 11 65380870 65380870 C A MAP3K11 Nonsense_Mutation p.E120* 0.18 TCGA-AC-A5XS-01 11 66238754 66238754 G A PELI3 Missense_Mutation p.R89Q 0.36 tolerated(0.12) benign(0.411) TCGA-AC-A5XS-01 11 66322631 66322631 C T CTD-3074O7.2 3'Flank 0.26 TCGA-AC-A5XS-01 11 67176587 67176587 G A TBC1D10C Missense_Mutation p.E326K 0.32 tolerated(0.09) benign(0.146) TCGA-AC-A5XS-01 11 71146693 71146693 C T DHCR7 Missense_Mutation p.D386N 0.17 tolerated(0.06) possibly_damaging(0.863) TCGA-AC-A5XS-01 11 73583850 73583850 C G COA4 3'UTR 0.23 TCGA-AC-A5XS-01 11 76867791 76867791 G C MYO7A Missense_Mutation p.E186Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A5XS-01 11 8013646 8013646 G T EIF3F Nonsense_Mutation p.E151* 0.15 TCGA-AC-A5XS-01 11 89385751 89385751 C G FOLH1B RNA 0.21 TCGA-AC-A5XS-01 11 89935713 89935713 C T CHORDC1 Missense_Mutation p.D287N 0.18 tolerated(0.21) possibly_damaging(0.768) TCGA-AC-A5XS-01 11 94197299 94197299 C T MRE11A Missense_Mutation p.R402K 0.17 tolerated(0.27) benign(0.019) TCGA-AC-A5XS-01 11 95561159 95561159 G A CEP57 Silent p.Q365Q 0.16 TCGA-AC-A5XS-01 11 9597779 9597779 C - WEE1 Frame_Shift_Del p.C263Vfs*29 0.22 TCGA-AC-A5XS-01 12 104056750 104056750 G A STAB2 Missense_Mutation p.D666N 0.31 tolerated(0.23) probably_damaging(0.998) TCGA-AC-A5XS-01 12 11036778 11036778 G A PRH1 Silent p.F13F 0.23 TCGA-AC-A5XS-01 12 110959979 110959979 C G RAD9B Intron 0.41 TCGA-AC-A5XS-01 12 111322027 111322027 G T CCDC63 Missense_Mutation p.M349I 0.34 tolerated(0.18) benign(0.168) TCGA-AC-A5XS-01 12 113334599 113334600 - C RPH3A 3'UTR 0.24 TCGA-AC-A5XS-01 12 119617447 119617447 G C HSPB8 Missense_Mutation p.L110F 0.07 deleterious(0.04) benign(0.347) TCGA-AC-A5XS-01 12 122277533 122277533 G C HPD 3'UTR 0.24 TCGA-AC-A5XS-01 12 122685172 122685172 G T LRRC43 Missense_Mutation p.D529Y 0.15 deleterious(0) benign(0.26) TCGA-AC-A5XS-01 12 122990169 122990169 C G RSRC2 Missense_Mutation p.D404H 0.09 deleterious(0.04) unknown(0) TCGA-AC-A5XS-01 12 122995680 122995686 GTTTTTC TTTTTT RSRC2 Frame_Shift_Del p.E259Kfs*8 0.14 TCGA-AC-A5XS-01 12 125397185 125397185 C G UBC Missense_Mutation p.R378T 0.17 deleterious(0.03) probably_damaging(0.972) TCGA-AC-A5XS-01 12 130884256 130884256 G C RIMBP2 Missense_Mutation p.Q1034E 0.23 deleterious_low_confidence(0.01) benign(0.066) TCGA-AC-A5XS-01 12 132396527 132396527 C T ULK1 Missense_Mutation p.S330F 0.28 deleterious(0) probably_damaging(0.996) TCGA-AC-A5XS-01 12 132589564 132589564 G C EP400NL Missense_Mutation p.M201I 0.22 deleterious_low_confidence(0.03) benign(0.004) TCGA-AC-A5XS-01 12 16703429 16703429 C G LMO3 3'Flank 0.21 TCGA-AC-A5XS-01 12 19671216 19671216 C T AEBP2 Intron 0.28 TCGA-AC-A5XS-01 12 40153646 40153646 C T SLC2A13 3'UTR 0.23 TCGA-AC-A5XS-01 12 41967239 41967239 G A PDZRN4 Silent p.K886K 0.31 TCGA-AC-A5XS-01 12 4835986 4835986 G A GALNT8 Missense_Mutation p.R167Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A5XS-01 12 49047331 49047331 G A KANSL2 3'UTR 0.25 TCGA-AC-A5XS-01 12 49397660 49397660 C T PRKAG1 Missense_Mutation p.E204K 0.44 deleterious(0.02) possibly_damaging(0.678) TCGA-AC-A5XS-01 12 50189617 50189617 C T NCKAP5L Missense_Mutation p.E676K 0.19 deleterious(0.04) benign(0.294) TCGA-AC-A5XS-01 12 52163658 52163658 G T SCN8A Missense_Mutation p.D1127Y 0.26 deleterious(0.02) possibly_damaging(0.806) TCGA-AC-A5XS-01 12 52698793 52698793 G C KRT86 Silent p.L239L 0.21 TCGA-AC-A5XS-01 12 52699843 52699843 G C KRT86 Splice_Site p.X343_splice 0.21 TCGA-AC-A5XS-01 12 53345518 53345518 G C KRT18 Missense_Mutation p.E276Q 0.31 tolerated(0.08) benign(0.367) TCGA-AC-A5XS-01 12 53664159 53664159 C G ESPL1 Intron 0.14 TCGA-AC-A5XS-01 12 54645966 54645966 C G CBX5 Missense_Mutation p.E61D 0.15 tolerated(0.9) probably_damaging(0.983) TCGA-AC-A5XS-01 12 54964046 54964046 G C PDE1B Missense_Mutation p.D167H 0.24 deleterious(0) probably_damaging(0.993) TCGA-AC-A5XS-01 12 56386425 56386425 G A RAB5B 3'UTR 0.12 TCGA-AC-A5XS-01 12 56666906 56666906 C G CS Missense_Mutation p.E455Q 0.26 tolerated(0.18) benign(0.04) TCGA-AC-A5XS-01 12 58215240 58215240 G A CTDSP2 3'UTR 0.31 TCGA-AC-A5XS-01 12 5853339 5853339 G C ANO2 Missense_Mutation p.I441M 0.39 deleterious(0) possibly_damaging(0.89) TCGA-AC-A5XS-01 12 64485059 64485059 T A SRGAP1 Silent p.P480P 0.21 TCGA-AC-A5XS-01 12 6631181 6631181 G C NCAPD2 Missense_Mutation p.M644I 0.14 deleterious(0.01) benign(0.387) TCGA-AC-A5XS-01 12 66641490 66641490 G A IRAK3 Missense_Mutation p.E444K 0.31 deleterious(0.01) possibly_damaging(0.718) TCGA-AC-A5XS-01 12 75784631 75784633 TTC - GLIPR1L2 5'Flank 0.23 TCGA-AC-A5XS-01 12 77439881 77439881 C T E2F7 Missense_Mutation p.D256N 0.19 tolerated(0.26) benign(0.008) TCGA-AC-A5XS-01 12 85277802 85277802 C T SLC6A15 Missense_Mutation p.E198K 0.24 tolerated(0.33) possibly_damaging(0.513) TCGA-AC-A5XS-01 12 8689859 8689859 G T CLEC4E Nonsense_Mutation p.S75* 0.31 TCGA-AC-A5XS-01 12 91371955 91371955 C G EPYC Missense_Mutation p.E84Q 0.24 tolerated(0.23) benign(0.145) TCGA-AC-A5XS-01 12 91449420 91449420 G A KERA Silent p.A213A 0.29 TCGA-AC-A5XS-01 13 113715001 113715001 G C MCF2L Missense_Mutation p.R155T 0.23 deleterious(0) benign(0.062) TCGA-AC-A5XS-01 13 20346630 20346630 G C PSPC1 Silent p.L142L 0.20 TCGA-AC-A5XS-01 13 23904763 23904763 C T SACS Missense_Mutation p.E4418K 0.07 benign(0.003) TCGA-AC-A5XS-01 13 23911546 23911546 C A SACS Missense_Mutation p.D2157Y 0.22 probably_damaging(0.999) TCGA-AC-A5XS-01 13 23985448 23985448 C T SACS 5'UTR 0.16 TCGA-AC-A5XS-01 13 24797426 24797426 C T SPATA13 Missense_Mutation p.S120L 0.25 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AC-A5XS-01 13 25052268 25052268 C G PARP4 Missense_Mutation p.G532A 0.24 deleterious(0) probably_damaging(0.992) TCGA-AC-A5XS-01 13 29275113 29275113 C T SLC46A3 Intron 0.22 TCGA-AC-A5XS-01 13 41486035 41486035 G C SUGT1P3 RNA 0.24 TCGA-AC-A5XS-01 13 42872906 42872906 G A AKAP11 Missense_Mutation p.E197K 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-AC-A5XS-01 13 49282711 49282711 G C CYSLTR2 3'UTR 0.19 TCGA-AC-A5XS-01 13 67205389 67205389 G A PCDH9 Missense_Mutation p.S1098F 0.15 deleterious(0) possibly_damaging(0.887) TCGA-AC-A5XS-01 13 73650062 73650062 C T KLF5 3'UTR 0.29 TCGA-AC-A5XS-01 13 75936434 75936434 C A TBC1D4 Nonsense_Mutation p.E270* 0.30 TCGA-AC-A5XS-01 14 102470886 102470886 G C DYNC1H1 Missense_Mutation p.E1639Q 0.20 probably_damaging(0.993) TCGA-AC-A5XS-01 14 102825882 102825882 G C CINP Missense_Mutation p.S32C 0.21 deleterious(0.02) benign(0.126) TCGA-AC-A5XS-01 14 105397278 105397278 C G PLD4 Nonsense_Mutation p.S306* 0.22 TCGA-AC-A5XS-01 14 23020625 23020625 G A AE000662.92 5'Flank 0.22 TCGA-AC-A5XS-01 14 23456510 23456510 C T C14orf93 Missense_Mutation p.G511S 0.19 tolerated_low_confidence(0.55) benign(0.028) TCGA-AC-A5XS-01 14 23892753 23892753 C T MYH7 Intron 0.16 TCGA-AC-A5XS-01 14 23892757 23892757 T C MYH7 Missense_Mutation p.D1033G 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A5XS-01 14 45431568 45431568 C T FAM179B 5'UTR 0.29 TCGA-AC-A5XS-01 14 45693596 45693596 C G MIS18BP1 Missense_Mutation p.E732Q 0.25 deleterious(0.03) benign(0.026) TCGA-AC-A5XS-01 14 50809774 50809774 G A CDKL1 Intron 0.17 TCGA-AC-A5XS-01 14 60938273 60938273 G A C14orf39 Nonsense_Mutation p.R170* 0.24 TCGA-AC-A5XS-01 14 62547604 62547604 C G SYT16 Nonsense_Mutation p.S349* 0.26 TCGA-AC-A5XS-01 14 75137503 75137503 G C AREL1 Missense_Mutation p.Q524E 0.16 tolerated(1) possibly_damaging(0.699) TCGA-AC-A5XS-01 14 75329873 75329873 G A PROX2 Missense_Mutation p.S222L 0.14 tolerated(1) benign(0.002) TCGA-AC-A5XS-01 14 86093711 86093711 C T FLRT2 3'UTR 0.22 TCGA-AC-A5XS-01 14 95572024 95572024 C T DICER1 Silent p.Q1028Q 0.20 TCGA-AC-A5XS-01 14 95921859 95921859 C T SYNE3 Missense_Mutation p.G331E 0.26 tolerated(0.09) benign(0.027) TCGA-AC-A5XS-01 14 96129889 96129889 C G TCL6 RNA 0.26 TCGA-AC-A5XS-01 15 25966966 25966966 C T ATP10A Missense_Mutation p.E401K 0.22 tolerated(0.06) possibly_damaging(0.754) TCGA-AC-A5XS-01 15 27765254 27765254 A C GABRG3 Silent p.P283P 0.15 TCGA-AC-A5XS-01 15 31212838 31212838 G C FAN1 Missense_Mutation p.Q678H 0.24 deleterious(0) possibly_damaging(0.778) TCGA-AC-A5XS-01 15 38782420 38782420 T G RASGRP1 3'UTR 0.25 TCGA-AC-A5XS-01 15 41364197 41364197 G A INO80 Silent p.N485N 0.25 TCGA-AC-A5XS-01 15 41797488 41797488 G A LTK Silent p.L615L 0.10 TCGA-AC-A5XS-01 15 41988871 41988871 G A MGA Missense_Mutation p.D555N 0.24 tolerated_low_confidence(0.62) benign(0.131) TCGA-AC-A5XS-01 15 42052659 42052659 G A MGA Missense_Mutation p.E2444K 0.34 deleterious(0.04) probably_damaging(0.995) TCGA-AC-A5XS-01 15 42362917 42362917 C G PLA2G4D Missense_Mutation p.E681Q 0.26 tolerated(0.97) benign(0.012) TCGA-AC-A5XS-01 15 42455562 42455562 C A VPS39 Missense_Mutation p.D721Y 0.23 deleterious(0.01) possibly_damaging(0.785) TCGA-AC-A5XS-01 15 42503225 42503225 C G TMEM87A 3'UTR 0.43 TCGA-AC-A5XS-01 15 42704418 42704418 C G CAPN3 3'UTR 0.14 TCGA-AC-A5XS-01 15 43701232 43701232 G A TP53BP1 Silent p.F1821F 0.27 TCGA-AC-A5XS-01 15 43785307 43785307 G A TP53BP1 5'UTR 0.16 TCGA-AC-A5XS-01 15 44865858 44865858 C T SPG11 Missense_Mutation p.R2031Q 0.27 deleterious(0) possibly_damaging(0.776) TCGA-AC-A5XS-01 15 49030630 49030630 C T CEP152 Missense_Mutation p.G1650E 0.23 tolerated(0.17) benign(0.025) TCGA-AC-A5XS-01 15 50852978 50852978 C G TRPM7 3'UTR 0.14 TCGA-AC-A5XS-01 15 51828435 51828435 T G DMXL2 Missense_Mutation p.I748L 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-AC-A5XS-01 15 62228931 62228931 C G VPS13C Missense_Mutation p.D1874H 0.15 deleterious(0) probably_damaging(0.98) TCGA-AC-A5XS-01 15 65449253 65449253 C T CLPX Missense_Mutation p.E359K 0.16 deleterious(0) probably_damaging(0.996) TCGA-AC-A5XS-01 15 65621781 65621781 C G IGDCC3 Missense_Mutation p.E718Q 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AC-A5XS-01 15 71174841 71174841 C G THAP10 Missense_Mutation p.Q242H 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AC-A5XS-01 15 71952935 71952935 G A THSD4 Missense_Mutation p.D407N 0.14 tolerated(0.06) possibly_damaging(0.566) TCGA-AC-A5XS-01 15 74178433 74178433 C T TBC1D21 Silent p.V198V 0.22 TCGA-AC-A5XS-01 15 74487715 74487715 G A STRA6 Silent p.L214L 0.29 TCGA-AC-A5XS-01 15 75760007 75760007 C G PTPN9 3'UTR 0.29 TCGA-AC-A5XS-01 15 76136509 76136509 C T UBE2Q2 Intron 0.36 TCGA-AC-A5XS-01 15 77046211 77046211 C T SCAPER Missense_Mutation p.E602K 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-AC-A5XS-01 15 77759492 77759492 G C HMG20A Missense_Mutation p.R98P 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-AC-A5XS-01 15 86807827 86807827 C - AGBL1 Frame_Shift_Del p.P430Qfs*3 0.30 TCGA-AC-A5XS-01 15 89835994 89835994 G A FANCI Missense_Mutation p.E690K 0.20 tolerated(0.07) benign(0.018) TCGA-AC-A5XS-01 15 90026415 90026415 G A RHCG Silent p.V135V 0.22 TCGA-AC-A5XS-01 15 94945131 94945131 C G MCTP2 Missense_Mutation p.I656M 0.29 tolerated(0.08) benign(0.066) TCGA-AC-A5XS-01 16 10032316 10032316 G C GRIN2A Silent p.V169V 0.11 TCGA-AC-A5XS-01 16 10989267 10989267 G A CIITA Missense_Mutation p.E61K 0.18 deleterious(0) possibly_damaging(0.598) TCGA-AC-A5XS-01 16 1308496 1308496 G C TPSD1 3'Flank 0.22 TCGA-AC-A5XS-01 16 15141722 15141722 C T NTAN1 Silent p.L80L 0.07 TCGA-AC-A5XS-01 16 17201735 17201735 G C XYLT1 3'UTR 0.15 TCGA-AC-A5XS-01 16 17202122 17202122 G A XYLT1 3'UTR 0.14 TCGA-AC-A5XS-01 16 20362044 20362044 G A UMOD Silent p.L6L 0.12 TCGA-AC-A5XS-01 16 20808118 20808118 A T ERI2 3'UTR 0.35 TCGA-AC-A5XS-01 16 20856373 20856373 C G AC004381.6 Intron 0.15 TCGA-AC-A5XS-01 16 21078624 21078624 C T DNAH3 Silent p.K1166K 0.11 TCGA-AC-A5XS-01 16 2140187 2140187 G C PKD1 Missense_Mutation p.H4151Q 0.33 probably_damaging(0.998) TCGA-AC-A5XS-01 16 2144109 2144109 C G PKD1 Silent p.A3534A 0.29 TCGA-AC-A5XS-01 16 2144165 2144165 G C PKD1 Missense_Mutation p.L3516V 0.27 benign(0.006) TCGA-AC-A5XS-01 16 2564163 2564163 C T ATP6V0C Missense_Mutation p.S20L 0.17 deleterious(0.01) benign(0.094) TCGA-AC-A5XS-01 16 28187249 28187249 G C XPO6 Missense_Mutation p.F125L 0.24 deleterious(0.03) possibly_damaging(0.851) TCGA-AC-A5XS-01 16 28884771 28884771 C T SH2B1 Missense_Mutation p.P634L 0.17 tolerated(0.15) benign(0) TCGA-AC-A5XS-01 16 28995790 28995790 G A SPNS1 3'UTR 0.20 TCGA-AC-A5XS-01 16 30537302 30537302 C T ZNF768 Silent p.E53E 0.23 TCGA-AC-A5XS-01 16 30543991 30543991 G A ZNF747 3'UTR 0.14 TCGA-AC-A5XS-01 16 31073559 31073559 C T ZNF668 Silent p.G253G 0.11 TCGA-AC-A5XS-01 16 3602198 3602198 G C NLRC3 Silent p.L829L 0.07 TCGA-AC-A5XS-01 16 4322754 4322754 C T TFAP4 5'UTR 0.11 TCGA-AC-A5XS-01 16 57805265 57805265 C G KIFC3 Missense_Mutation p.E204Q 0.35 tolerated(0.21) benign(0.408) TCGA-AC-A5XS-01 16 58043924 58043924 C T USB1 Silent p.F119F 0.18 TCGA-AC-A5XS-01 16 66754838 66754838 G C DYNC1LI2 3'UTR 0.27 TCGA-AC-A5XS-01 16 68336329 68336329 C G SLC7A6OS Missense_Mutation p.E252Q 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-AC-A5XS-01 16 68862100 68862103 TTTC - CDH1 Frame_Shift_Del p.L731Gfs*38 0.26 TCGA-AC-A5XS-01 16 69703977 69703977 G A NFAT5 Silent p.L489L 0.39 TCGA-AC-A5XS-01 16 740352 740352 C T WDR24 5'UTR 0.15 TCGA-AC-A5XS-01 17 10399732 10399732 G T MYH1 Silent p.I1597I 0.28 TCGA-AC-A5XS-01 17 1516496 1516496 G A SLC43A2 Missense_Mutation p.S165L 0.19 deleterious(0) possibly_damaging(0.452) TCGA-AC-A5XS-01 17 18022927 18022927 G C MYO15A Missense_Mutation p.W271C 0.33 probably_damaging(0.992) TCGA-AC-A5XS-01 17 18205711 18205711 C G TOP3A Missense_Mutation p.Q227H 0.32 deleterious(0) probably_damaging(0.972) TCGA-AC-A5XS-01 17 18205912 18205912 C G TOP3A Missense_Mutation p.E209Q 0.27 deleterious(0.04) probably_damaging(0.951) TCGA-AC-A5XS-01 17 2291162 2291162 G C MNT Missense_Mutation p.S330C 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-AC-A5XS-01 17 2601678 2601678 C T CLUH Silent p.L453L 0.13 TCGA-AC-A5XS-01 17 26691951 26691951 G A VTN 3'Flank 0.23 TCGA-AC-A5XS-01 17 30274681 30274681 G C SUZ12 Missense_Mutation p.M144I 0.22 deleterious(0.02) benign(0.022) TCGA-AC-A5XS-01 17 37186936 37186936 C G CTD-2206N4.2 5'Flank 0.31 TCGA-AC-A5XS-01 17 37237384 37237384 G A PLXDC1 Intron 0.15 TCGA-AC-A5XS-01 17 40844691 40844691 C T CNTNAP1 Missense_Mutation p.P902L 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 17 41004938 41004938 C T AOC3 Silent p.F526F 0.09 TCGA-AC-A5XS-01 17 42427110 42427110 C G GRN Missense_Mutation p.Q114E 0.19 tolerated(0.45) benign(0.411) TCGA-AC-A5XS-01 17 47590629 47590629 C G NGFR 3'UTR 0.24 TCGA-AC-A5XS-01 17 47676501 47676501 C T SPOP 3'UTR 0.36 TCGA-AC-A5XS-01 17 47677000 47677000 C A SPOP 3'UTR 0.23 TCGA-AC-A5XS-01 17 47677547 47677547 C A SPOP 3'UTR 0.21 TCGA-AC-A5XS-01 17 47699344 47699344 G C SPOP Missense_Mutation p.S55C 0.23 deleterious(0.02) probably_damaging(1) TCGA-AC-A5XS-01 17 47700145 47700145 G T SPOP Missense_Mutation p.P10T 0.14 deleterious(0.02) benign(0.009) TCGA-AC-A5XS-01 17 54451972 54451972 G A ANKFN1 Silent p.E272E 0.22 TCGA-AC-A5XS-01 17 56386480 56386480 C G BZRAP1 Missense_Mutation p.E1385Q 0.14 tolerated(0.26) benign(0.082) TCGA-AC-A5XS-01 17 56597698 56597698 G A SEPT4 3'UTR 0.13 TCGA-AC-A5XS-01 17 56598275 56598275 G C SEPT4 Intron 0.39 TCGA-AC-A5XS-01 17 61619699 61619699 G C KCNH6 Missense_Mutation p.K684N 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-AC-A5XS-01 17 63221418 63221418 G A RGS9 Missense_Mutation p.R569Q 0.13 tolerated_low_confidence(0.74) benign(0) TCGA-AC-A5XS-01 17 65068053 65068053 G A HELZ 3'UTR 0.06 TCGA-AC-A5XS-01 17 65346417 65346417 A G PSMD12 Silent p.Y111Y 0.12 TCGA-AC-A5XS-01 17 68171873 68171873 C T KCNJ2 Silent p.L231L 0.32 TCGA-AC-A5XS-01 17 7010407 7010407 G C ASGR2 Missense_Mutation p.S192C 0.28 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 17 72939777 72939777 G C OTOP3 Missense_Mutation p.E255Q 0.28 tolerated(0.08) benign(0.04) TCGA-AC-A5XS-01 17 74019586 74019586 C G EVPL Missense_Mutation p.E116D 0.23 deleterious(0.04) possibly_damaging(0.817) TCGA-AC-A5XS-01 17 74730725 74730725 C T SRSF2 3'UTR 0.42 TCGA-AC-A5XS-01 17 74731884 74731884 C T SRSF2 3'UTR 0.21 TCGA-AC-A5XS-01 17 74733087 74733087 C G SRSF2 Missense_Mutation p.K52N 0.28 tolerated(0.06) benign(0.294) TCGA-AC-A5XS-01 17 74737112 74737112 C T MFSD11 Nonsense_Mutation p.Q76* 0.29 TCGA-AC-A5XS-01 17 74738061 74738074 GCCGTTTTCATCCA - MFSD11 Frame_Shift_Del p.V92Ffs*33 0.21 TCGA-AC-A5XS-01 17 7494804 7494804 G T FXR2 3'UTR 0.26 TCGA-AC-A5XS-01 17 76060963 76060963 G A TNRC6C Silent p.P849P 0.33 TCGA-AC-A5XS-01 17 76705782 76705782 C A CYTH1 Nonsense_Mutation p.E19* 0.28 TCGA-AC-A5XS-01 17 7752800 7752800 C T KDM6B Missense_Mutation p.P1065L 0.18 benign(0.007) TCGA-AC-A5XS-01 17 80051518 80051518 C T FASN Missense_Mutation p.R137Q 0.29 deleterious(0.03) possibly_damaging(0.864) TCGA-AC-A5XS-01 17 8135130 8135130 G A CTC1 Missense_Mutation p.H797Y 0.14 tolerated(0.08) benign(0.018) TCGA-AC-A5XS-01 17 8379090 8379090 C T MYH10 3'UTR 0.16 TCGA-AC-A5XS-01 17 913994 913994 G C ABR Silent p.L737L 0.24 TCGA-AC-A5XS-01 18 12126074 12126074 G C ANKRD62 Missense_Mutation p.E752Q 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-AC-A5XS-01 18 213498 213498 G C USP14 3'UTR 0.17 TCGA-AC-A5XS-01 18 22804518 22804518 C G ZNF521 Missense_Mutation p.E1122Q 0.19 tolerated(0.55) benign(0.001) TCGA-AC-A5XS-01 18 2891396 2891396 G A EMILIN2 Missense_Mutation p.R424K 0.21 tolerated(0.14) probably_damaging(0.99) TCGA-AC-A5XS-01 18 39537606 39537606 C T PIK3C3 Missense_Mutation p.S47L 0.17 tolerated(0.07) possibly_damaging(0.87) TCGA-AC-A5XS-01 18 45368072 45368072 G A SMAD2 3'UTR 0.18 TCGA-AC-A5XS-01 18 48241446 48241446 C T MAPK4 Intron 0.35 TCGA-AC-A5XS-01 18 56601829 56601829 G A ZNF532 Silent p.T837T 0.28 TCGA-AC-A5XS-01 18 59217294 59217294 G A CDH20 Missense_Mutation p.D578N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A5XS-01 18 6093494 6093494 C T L3MBTL4 Silent p.L411L 0.12 TCGA-AC-A5XS-01 18 77917708 77917708 G A PARD6G Silent p.S359S 0.25 TCGA-AC-A5XS-01 18 9254494 9254494 C T ANKRD12 Missense_Mutation p.S410L 0.25 deleterious(0.02) benign(0.008) TCGA-AC-A5XS-01 19 10166387 10166387 G A C3P1 RNA 0.36 TCGA-AC-A5XS-01 19 10419944 10419944 G C ZGLP1 5'UTR 0.29 TCGA-AC-A5XS-01 19 10677725 10677725 G A CDKN2D 3'UTR 0.19 TCGA-AC-A5XS-01 19 11457191 11457191 C G TMEM205 5'Flank 0.31 TCGA-AC-A5XS-01 19 11832704 11832704 G C ZNF823 Missense_Mutation p.H549D 0.06 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 19 12146466 12146466 C G ZNF433 5'UTR 0.36 TCGA-AC-A5XS-01 19 12691625 12691625 C G ZNF490 Missense_Mutation p.E422Q 0.17 tolerated(0.92) benign(0.05) TCGA-AC-A5XS-01 19 12903464 12903464 C T JUNB Silent p.I293I 0.32 TCGA-AC-A5XS-01 19 13134805 13134805 C G NFIX Intron 0.11 TCGA-AC-A5XS-01 19 13218430 13218430 G A TRMT1 Missense_Mutation p.S514L 0.22 tolerated(0.15) benign(0.046) TCGA-AC-A5XS-01 19 13869970 13869970 G A CCDC130 Missense_Mutation p.E153K 0.17 tolerated(0.82) benign(0.244) TCGA-AC-A5XS-01 19 14247274 14247274 C A ASF1B 5'UTR 0.22 TCGA-AC-A5XS-01 19 14272308 14272308 G C LPHN1 Missense_Mutation p.I447M 0.38 tolerated(0.15) possibly_damaging(0.66) TCGA-AC-A5XS-01 19 17487789 17487789 C A PLVAP Silent p.L103L 0.12 TCGA-AC-A5XS-01 19 18367942 18367942 G A KIAA1683 3'UTR 0.12 TCGA-AC-A5XS-01 19 19381207 19381207 C T TM6SF2 Missense_Mutation p.A82T 0.25 deleterious(0) benign(0.322) TCGA-AC-A5XS-01 19 20011812 20011812 C G ZNF93 5'Flank 0.24 TCGA-AC-A5XS-01 19 36303267 36303267 C G PRODH2 Missense_Mutation p.K198N 0.21 deleterious(0.03) benign(0.28) TCGA-AC-A5XS-01 19 36831100 36831100 C T ZFP14 3'UTR 0.22 TCGA-AC-A5XS-01 19 37488169 37488169 C T ZNF568 Nonsense_Mutation p.Q462* 0.28 TCGA-AC-A5XS-01 19 38993249 38993249 G C RYR1 Missense_Mutation p.E2573Q 0.21 benign(0.048) TCGA-AC-A5XS-01 19 39866466 39866466 G A SAMD4B Missense_Mutation p.E282K 0.19 tolerated(0.11) probably_damaging(0.936) TCGA-AC-A5XS-01 19 40421295 40421295 C G FCGBP Missense_Mutation p.D876H 0.20 probably_damaging(1) TCGA-AC-A5XS-01 19 40723221 40723221 G C TTC9B Silent p.L161L 0.26 TCGA-AC-A5XS-01 19 40895447 40895447 G C HIPK4 Silent p.L121L 0.27 TCGA-AC-A5XS-01 19 40900850 40900850 C T PRX Missense_Mutation p.E1137K 0.18 tolerated(0.14) possibly_damaging(0.486) TCGA-AC-A5XS-01 19 42599709 42599709 C T POU2F2 Silent p.K314K 0.18 TCGA-AC-A5XS-01 19 42599751 42599751 C G POU2F2 Missense_Mutation p.K300N 0.20 deleterious(0) probably_damaging(0.981) TCGA-AC-A5XS-01 19 45375215 45375215 C T PVRL2 Missense_Mutation p.S195F 0.12 deleterious(0.02) benign(0.111) TCGA-AC-A5XS-01 19 46215014 46215014 G C FBXO46 Silent p.L580L 0.33 TCGA-AC-A5XS-01 19 46215965 46215965 G A FBXO46 Silent p.F263F 0.19 TCGA-AC-A5XS-01 19 47113240 47113240 G C CALM3 3'UTR 0.24 TCGA-AC-A5XS-01 19 49259403 49259403 C T FGF21 5'UTR 0.32 TCGA-AC-A5XS-01 19 49300250 49300250 C T BCAT2 Missense_Mutation p.G290S 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-AC-A5XS-01 19 50511043 50511043 C G VRK3 Missense_Mutation p.Q110H 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-AC-A5XS-01 19 50831835 50831835 C G KCNC3 Missense_Mutation p.E169Q 0.12 deleterious(0.01) benign(0.36) TCGA-AC-A5XS-01 19 53208824 53208824 G A ZNF611 Missense_Mutation p.S495L 0.25 deleterious(0.04) probably_damaging(0.989) TCGA-AC-A5XS-01 19 53572089 53572089 C T ZNF160 Silent p.K566K 0.20 TCGA-AC-A5XS-01 19 53793412 53793412 C T BIRC8 Silent p.E72E 0.24 TCGA-AC-A5XS-01 19 56190004 56190004 C T EPN1 Missense_Mutation p.S115L 0.28 deleterious(0) unknown(0) TCGA-AC-A5XS-01 19 580451 580451 C T BSG Silent p.I215I 0.26 TCGA-AC-A5XS-01 19 58290814 58290814 G C ZNF586 Missense_Mutation p.E287Q 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-AC-A5XS-01 19 58920443 58920443 G C ZNF584 5'UTR 0.20 TCGA-AC-A5XS-01 19 59061970 59061970 C G TRIM28 3'UTR 0.43 TCGA-AC-A5XS-01 19 59063456 59063456 C T CHMP2A Missense_Mutation p.D149N 0.16 tolerated(0.09) possibly_damaging(0.612) TCGA-AC-A5XS-01 19 630136 630136 C T POLRMT Missense_Mutation p.E76K 0.11 tolerated(0.09) possibly_damaging(0.606) TCGA-AC-A5XS-01 19 6440441 6440441 C G SLC25A23 3'UTR 0.38 TCGA-AC-A5XS-01 19 6754647 6754647 C G SH2D3A Missense_Mutation p.L359F 0.37 deleterious(0.04) possibly_damaging(0.585) TCGA-AC-A5XS-01 19 7694710 7694710 G C PET100 5'UTR 0.28 TCGA-AC-A5XS-01 19 806554 806554 G A PTBP1 Missense_Mutation p.E373K 0.21 deleterious(0.03) benign(0.046) TCGA-AC-A5XS-01 19 8182119 8182119 C T FBN3 Missense_Mutation p.E1174K 0.22 tolerated(0.19) benign(0.013) TCGA-AC-A5XS-01 19 8586112 8586112 G A MYO1F 3'UTR 0.33 TCGA-AC-A5XS-01 19 8993465 8993465 C T MUC16 Missense_Mutation p.R13875K 0.25 probably_damaging(0.997) TCGA-AC-A5XS-01 19 9204424 9204424 C T OR1M1 Silent p.F168F 0.25 TCGA-AC-A5XS-01 19 9204570 9204570 C G OR1M1 Missense_Mutation p.S217C 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 1 100613473 100613473 G A TRMT13 Missense_Mutation p.E281K 0.25 deleterious(0.01) possibly_damaging(0.904) TCGA-AC-A5XS-01 1 110032907 110032907 G T ATXN7L2 Silent p.G417G 0.31 TCGA-AC-A5XS-01 1 110155435 110155435 C A GNAT2 Nonsense_Mutation p.E20* 0.18 TCGA-AC-A5XS-01 1 113242848 113242848 G C MOV10 Missense_Mutation p.E936Q 0.17 tolerated(0.36) benign(0.006) TCGA-AC-A5XS-01 1 114454467 114454467 C T DCLRE1B Missense_Mutation p.S418F 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.891) TCGA-AC-A5XS-01 1 115124173 115124173 C T BCAS2 Missense_Mutation p.D14N 0.13 deleterious(0) possibly_damaging(0.737) TCGA-AC-A5XS-01 1 144859897 144859897 G C PDE4DIP Missense_Mutation p.Q2063E 0.09 tolerated(0.09) benign(0.024) TCGA-AC-A5XS-01 1 149857928 149857928 G C HIST2H2BE Missense_Mutation p.S88C 0.18 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AC-A5XS-01 1 150671188 150671188 G C HORMAD1 Missense_Mutation p.S376C 0.11 deleterious(0.03) benign(0.043) TCGA-AC-A5XS-01 1 151131930 151131930 C G TNFAIP8L2 3'UTR 0.21 TCGA-AC-A5XS-01 1 151993671 151993671 C G NBPF18P RNA 0.12 TCGA-AC-A5XS-01 1 152278088 152278088 C T FLG Missense_Mutation p.E3092K 0.16 unknown(0) TCGA-AC-A5XS-01 1 153276357 153276357 G C PGLYRP3 Missense_Mutation p.Q169E 0.17 tolerated(0.23) benign(0.309) TCGA-AC-A5XS-01 1 155103876 155103876 C G EFNA1 Missense_Mutation p.P52A 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 1 155112728 155112728 G C DPM3 Missense_Mutation p.L27V 0.16 deleterious_low_confidence(0) unknown(0) TCGA-AC-A5XS-01 1 155774755 155774755 C T GON4L Missense_Mutation p.D544N 0.19 deleterious(0.04) possibly_damaging(0.728) TCGA-AC-A5XS-01 1 158063196 158063196 C T KIRREL Silent p.F513F 0.11 TCGA-AC-A5XS-01 1 158301159 158301159 C T CD1B Missense_Mutation p.E19K 0.27 tolerated(0.3) benign(0.005) TCGA-AC-A5XS-01 1 158533157 158533157 G C OR6P1 Missense_Mutation p.R80G 0.16 deleterious(0) benign(0.089) TCGA-AC-A5XS-01 1 158533238 158533238 G C OR6P1 Missense_Mutation p.P53A 0.17 tolerated(0.83) benign(0.001) TCGA-AC-A5XS-01 1 158612321 158612321 C T SPTA1 Silent p.L1539L 0.22 TCGA-AC-A5XS-01 1 159166750 159166750 G A CADM3 Silent p.L318L 0.22 TCGA-AC-A5XS-01 1 160267442 160267442 C T COPA Missense_Mutation p.E700K 0.18 deleterious(0) possibly_damaging(0.749) TCGA-AC-A5XS-01 1 161017609 161017609 G A ARHGAP30 Silent p.L1068L 0.27 TCGA-AC-A5XS-01 1 169096637 169096637 C T ATP1B1 Silent p.F186F 0.20 TCGA-AC-A5XS-01 1 171673540 171673540 G A VAMP4 3'UTR 0.16 TCGA-AC-A5XS-01 1 173472458 173472458 G C SLC9C2 Silent p.V1106V 0.21 TCGA-AC-A5XS-01 1 175086295 175086295 G C TNN Missense_Mutation p.Q780H 0.10 tolerated(0.26) possibly_damaging(0.528) TCGA-AC-A5XS-01 1 176738742 176738742 G C PAPPA2 Splice_Site p.X1442_splice 0.21 TCGA-AC-A5XS-01 1 176926845 176926845 G A ASTN1 Missense_Mutation p.S619L 0.16 deleterious(0) benign(0.144) TCGA-AC-A5XS-01 1 178427263 178427263 G A RASAL2 Missense_Mutation p.E946K 0.35 deleterious(0.01) probably_damaging(0.94) TCGA-AC-A5XS-01 1 178490494 178490494 C G TEX35 Intron 0.23 TCGA-AC-A5XS-01 1 180082007 180082007 G A CEP350 3'UTR 0.15 TCGA-AC-A5XS-01 1 182025764 182025764 G T ZNF648 Nonsense_Mutation p.S461* 0.16 TCGA-AC-A5XS-01 1 183106909 183106909 G C LAMC1 Missense_Mutation p.E1474Q 0.11 tolerated(0.13) benign(0.091) TCGA-AC-A5XS-01 1 185969325 185969325 C T HMCN1 Silent p.V1341V 0.20 TCGA-AC-A5XS-01 1 186158822 186158822 G A HMCN1 Missense_Mutation p.E5574K 0.15 probably_damaging(0.931) TCGA-AC-A5XS-01 1 186312499 186312499 C T TPR Missense_Mutation p.E1237K 0.10 benign(0.292) TCGA-AC-A5XS-01 1 19563660 19563660 G A EMC1 Silent p.L429L 0.43 TCGA-AC-A5XS-01 1 201458006 201458006 C A CSRP1 Nonsense_Mutation p.E130* 0.18 TCGA-AC-A5XS-01 1 202302593 202302593 G A UBE2T Silent p.L90L 0.28 TCGA-AC-A5XS-01 1 202715442 202715442 C T KDM5B Missense_Mutation p.D676N 0.18 tolerated(0.19) benign(0.008) TCGA-AC-A5XS-01 1 203691759 203691759 C T ATP2B4 Missense_Mutation p.S989L 0.18 deleterious(0.03) benign(0.062) TCGA-AC-A5XS-01 1 204086989 204086989 G A SOX13 Intron 0.17 TCGA-AC-A5XS-01 1 204411714 204411714 G C PIK3C2B Silent p.L1032L 0.12 TCGA-AC-A5XS-01 1 207250991 207250991 C G PFKFB2 3'UTR 0.21 TCGA-AC-A5XS-01 1 212588196 212588196 G A TMEM206 5'UTR 0.19 TCGA-AC-A5XS-01 1 215931963 215931963 G C USH2A Missense_Mutation p.S3788C 0.11 probably_damaging(0.998) TCGA-AC-A5XS-01 1 216677022 216677022 C G ESRRG 3'UTR 0.22 TCGA-AC-A5XS-01 1 222803038 222803038 G C MIA3 Missense_Mutation p.E826Q 0.14 tolerated(0.13) benign(0.062) TCGA-AC-A5XS-01 1 222825379 222825379 G A MIA3 Missense_Mutation p.E1324K 0.19 deleterious(0) probably_damaging(0.982) TCGA-AC-A5XS-01 1 227968278 227968278 G C SNAP47 Missense_Mutation p.E433D 0.14 tolerated(0.11) possibly_damaging(0.86) TCGA-AC-A5XS-01 1 229738235 229738235 C G TAF5L Missense_Mutation p.D227H 0.16 tolerated(0.1) benign(0.005) TCGA-AC-A5XS-01 1 231935862 231935862 G C DISC1 Missense_Mutation p.M566I 0.17 tolerated(0.24) benign(0.169) TCGA-AC-A5XS-01 1 234529421 234529421 G A TARBP1 Missense_Mutation p.S1469L 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 1 236711309 236711309 C G LGALS8 Intron 0.12 TCGA-AC-A5XS-01 1 236734734 236734734 C G HEATR1 Missense_Mutation p.V1289L 0.19 deleterious(0) probably_damaging(0.927) TCGA-AC-A5XS-01 1 237946990 237946990 G C RYR2 Missense_Mutation p.G3993A 0.10 probably_damaging(0.999) TCGA-AC-A5XS-01 1 237948218 237948218 C T RYR2 Silent p.L4402L 0.20 TCGA-AC-A5XS-01 1 240286597 240286597 C T FMN2 Silent p.F578F 0.18 TCGA-AC-A5XS-01 1 24120390 24120390 G A LYPLA2 Missense_Mutation p.E89K 0.29 deleterious(0.02) benign(0.129) TCGA-AC-A5XS-01 1 24121280 24121280 G A LYPLA2 3'UTR 0.55 TCGA-AC-A5XS-01 1 241792302 241792302 C T CHML 3'UTR 0.12 TCGA-AC-A5XS-01 1 243327808 243327808 G C CEP170 Missense_Mutation p.Q1152E 0.13 deleterious(0) probably_damaging(0.989) TCGA-AC-A5XS-01 1 247473716 247473716 C T ZNF496 Missense_Mutation p.E232K 0.11 deleterious(0.01) possibly_damaging(0.825) TCGA-AC-A5XS-01 1 248112682 248112682 C G OR2L8 Missense_Mutation p.H175D 0.12 deleterious(0) probably_damaging(0.996) TCGA-AC-A5XS-01 1 248551533 248551533 G C OR2T6 Silent p.L208L 0.12 TCGA-AC-A5XS-01 1 249142293 249142293 C T ZNF672 Missense_Mutation p.R274W 0.31 deleterious(0) probably_damaging(0.91) TCGA-AC-A5XS-01 1 27333097 27333097 C G FAM46B Missense_Mutation p.D206H 0.29 tolerated(0.06) possibly_damaging(0.798) TCGA-AC-A5XS-01 1 32196704 32196704 C T BAI2 Silent p.L1359L 0.17 TCGA-AC-A5XS-01 1 33149762 33149762 C G RBBP4 3'UTR 0.25 TCGA-AC-A5XS-01 1 33149793 33149793 C T RBBP4 3'UTR 0.27 TCGA-AC-A5XS-01 1 3407145 3407145 G C MEGF6 Missense_Mutation p.L1525V 0.27 tolerated(0.5) benign(0.016) TCGA-AC-A5XS-01 1 34667763 34667763 C T C1orf94 Missense_Mutation p.A450V 0.16 deleterious(0.01) benign(0.379) TCGA-AC-A5XS-01 1 35871052 35871052 C G ZMYM4 Nonsense_Mutation p.S1260* 0.27 TCGA-AC-A5XS-01 1 36756972 36756972 C T THRAP3 Intron 0.15 TCGA-AC-A5XS-01 1 39835843 39835843 G A MACF1 Silent p.Q2298Q 0.10 TCGA-AC-A5XS-01 1 40704442 40704442 C T RLF Silent p.V1356V 0.25 TCGA-AC-A5XS-01 1 44466611 44466611 G A SLC6A9 Intron 0.45 TCGA-AC-A5XS-01 1 52930846 52930846 C T ZCCHC11 Splice_Site p.X989_splice 0.19 TCGA-AC-A5XS-01 1 58946629 58946629 A C OMA1 3'UTR 0.25 TCGA-AC-A5XS-01 1 62146817 62146817 C G TM2D1 3'UTR 0.19 TCGA-AC-A5XS-01 1 65775591 65775591 C G DNAJC6 Missense_Mutation p.P55A 0.40 tolerated(0.66) benign(0) TCGA-AC-A5XS-01 1 6682563 6682563 C T PHF13 3'UTR 0.33 TCGA-AC-A5XS-01 1 67147978 67147978 C T SGIP1 Missense_Mutation p.P414L 0.32 tolerated(0.3) probably_damaging(0.987) TCGA-AC-A5XS-01 1 70486741 70486741 C G LRRC7 Missense_Mutation p.Q454E 0.28 deleterious(0.04) probably_damaging(0.93) TCGA-AC-A5XS-01 1 70820799 70820799 G A HHLA3 Intron 0.15 TCGA-AC-A5XS-01 1 78097974 78097974 G A ZZZ3 Missense_Mutation p.P356S 0.18 tolerated(0.69) benign(0) TCGA-AC-A5XS-01 1 79120818 79120818 C A IFI44 Nonsense_Mutation p.S205* 0.24 TCGA-AC-A5XS-01 1 84386979 84386979 G A TTLL7 Missense_Mutation p.S414L 0.22 tolerated(0.08) possibly_damaging(0.806) TCGA-AC-A5XS-01 1 85491960 85491960 C G MCOLN3 Missense_Mutation p.K280N 0.34 tolerated(0.1) benign(0.174) TCGA-AC-A5XS-01 1 93029229 93029229 C T EVI5 Silent p.L696L 0.22 TCGA-AC-A5XS-01 1 97243418 97243418 G A PTBP2 Silent p.L208L 0.15 TCGA-AC-A5XS-01 20 10393660 10393660 C T MKKS Missense_Mutation p.R168K 0.12 tolerated(0.89) benign(0.004) TCGA-AC-A5XS-01 20 13140723 13140723 G A SPTLC3 Missense_Mutation p.E497K 0.21 tolerated(0.06) possibly_damaging(0.825) TCGA-AC-A5XS-01 20 13756521 13756521 C T ESF1 Missense_Mutation p.E345K 0.16 tolerated(0.06) probably_damaging(0.985) TCGA-AC-A5XS-01 20 23334771 23334771 G A NXT1 Silent p.R31R 0.16 TCGA-AC-A5XS-01 20 2739566 2739566 G C EBF4 Missense_Mutation p.E580Q 0.22 tolerated_low_confidence(0.06) benign(0.046) TCGA-AC-A5XS-01 20 2841103 2841103 C G VPS16 Silent p.L126L 0.20 TCGA-AC-A5XS-01 20 33502156 33502156 C T ACSS2 Silent p.V250V 0.25 TCGA-AC-A5XS-01 20 35858460 35858460 C T RPN2 Nonsense_Mutation p.Q527* 0.28 TCGA-AC-A5XS-01 20 36147634 36147634 C G BLCAP 5'UTR 0.24 TCGA-AC-A5XS-01 20 39317463 39317463 C T MAFB Missense_Mutation p.E10K 0.17 deleterious(0.03) benign(0.027) TCGA-AC-A5XS-01 20 39750723 39750723 G A TOP1 Missense_Mutation p.R708Q 0.11 deleterious(0) possibly_damaging(0.508) TCGA-AC-A5XS-01 20 43934160 43934160 G C MATN4 Silent p.L21L 0.16 TCGA-AC-A5XS-01 20 44506608 44506608 G A ZSWIM3 Missense_Mutation p.E471K 0.14 tolerated(0.58) benign(0.003) TCGA-AC-A5XS-01 20 45192122 45192122 G A SLC13A3 Silent p.F521F 0.12 TCGA-AC-A5XS-01 20 46301014 46301014 C T SULF2 Missense_Mutation p.E502K 0.14 tolerated(1) benign(0.001) TCGA-AC-A5XS-01 20 4833301 4833301 C G SLC23A2 3'UTR 0.20 TCGA-AC-A5XS-01 20 54961366 54961366 G C AURKA Missense_Mutation p.S89C 0.23 deleterious(0.02) benign(0.012) TCGA-AC-A5XS-01 20 60714153 60714153 G C PSMA7 Missense_Mutation p.S150W 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 20 60771001 60771001 G A MTG2 Silent p.L116L 0.24 TCGA-AC-A5XS-01 20 62338084 62338084 G T ARFRP1 Missense_Mutation p.L34M 0.14 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 20 62338085 62338085 G A ARFRP1 Silent p.F33F 0.15 TCGA-AC-A5XS-01 21 31709472 31709472 G A KRTAP27-1 Missense_Mutation p.S172F 0.20 deleterious(0) probably_damaging(0.99) TCGA-AC-A5XS-01 21 33709459 33709459 C A URB1 Missense_Mutation p.K1543N 0.30 deleterious(0) probably_damaging(0.991) TCGA-AC-A5XS-01 21 37741552 37741552 C T MORC3 Missense_Mutation p.S629L 0.18 tolerated(0.21) benign(0.001) TCGA-AC-A5XS-01 21 37742172 37742172 G A MORC3 Missense_Mutation p.E836K 0.22 tolerated(0.36) possibly_damaging(0.624) TCGA-AC-A5XS-01 21 40777834 40777834 C T LCA5L Missense_Mutation p.E663K 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-AC-A5XS-01 21 46308808 46308808 G A ITGB2 Missense_Mutation p.S627F 0.23 tolerated(0.13) benign(0.064) TCGA-AC-A5XS-01 21 47738149 47738149 G C C21orf58 Intron 0.25 TCGA-AC-A5XS-01 22 18166042 18166042 G A BCL2L13 Missense_Mutation p.E62K 0.24 deleterious(0) benign(0.242) TCGA-AC-A5XS-01 22 18314698 18314698 C G MICAL3 Missense_Mutation p.E993Q 0.28 possibly_damaging(0.475) TCGA-AC-A5XS-01 22 21348256 21348256 G A LZTR1 Missense_Mutation p.R466Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-AC-A5XS-01 22 24765209 24765209 C G SPECC1L Nonsense_Mutation p.S1003* 0.32 TCGA-AC-A5XS-01 22 31524534 31524534 C G INPP5J Nonsense_Mutation p.S328* 0.11 TCGA-AC-A5XS-01 22 37962796 37962796 C G CDC42EP1 Missense_Mutation p.S147C 0.23 tolerated(0.18) probably_damaging(0.939) TCGA-AC-A5XS-01 22 38087246 38087246 G A NOL12 Missense_Mutation p.R182Q 0.48 tolerated(0.39) benign(0.018) TCGA-AC-A5XS-01 22 38642041 38642041 G T TMEM184B Missense_Mutation p.F86L 0.32 tolerated(0.25) benign(0.191) TCGA-AC-A5XS-01 2 10199055 10199055 C T CYS1 Silent p.E134E 0.32 TCGA-AC-A5XS-01 2 108881454 108881454 G A SULT1C3 Missense_Mutation p.M265I 0.15 deleterious(0.01) benign(0.074) TCGA-AC-A5XS-01 2 128384592 128384592 G C MYO7B Missense_Mutation p.E1394Q 0.40 deleterious(0.05) benign(0.043) TCGA-AC-A5XS-01 2 128621583 128621583 C A AMMECR1L 3'UTR 0.20 TCGA-AC-A5XS-01 2 12881494 12881494 C T TRIB2 3'UTR 0.26 TCGA-AC-A5XS-01 2 141474303 141474303 G C LRP1B Missense_Mutation p.I1947M 0.25 benign(0.308) TCGA-AC-A5XS-01 2 145277793 145277793 G A ZEB2 5'UTR 0.39 TCGA-AC-A5XS-01 2 152220570 152220570 C T TNFAIP6 Nonsense_Mutation p.Q70* 0.24 TCGA-AC-A5XS-01 2 159481554 159481554 G A PKP4 Silent p.L256L 0.30 TCGA-AC-A5XS-01 2 160239072 160239072 C T BAZ2B Missense_Mutation p.E1335K 0.26 possibly_damaging(0.776) TCGA-AC-A5XS-01 2 162276718 162276718 G A TBR1 Silent p.L380L 0.24 TCGA-AC-A5XS-01 2 166731339 166731339 G A TTC21B Missense_Mutation p.L1293F 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 2 170502493 170502493 C G CCDC173 Missense_Mutation p.G506A 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-AC-A5XS-01 2 174774887 174774887 G A SP3 Missense_Mutation p.H710Y 0.25 tolerated(0.82) possibly_damaging(0.838) TCGA-AC-A5XS-01 2 175779833 175779833 G A CHN1 Silent p.L71L 0.23 TCGA-AC-A5XS-01 2 176960247 176960247 G C HOXD13 3'UTR 0.27 TCGA-AC-A5XS-01 2 176982240 176982240 G A HOXD10 Missense_Mutation p.E227K 0.16 tolerated(0.11) benign(0.116) TCGA-AC-A5XS-01 2 179471903 179471903 T A TTN Missense_Mutation p.H17809L 0.10 TCGA-AC-A5XS-01 2 179505325 179505325 C T TTN Missense_Mutation p.E13556K 0.25 TCGA-AC-A5XS-01 2 179516000 179516000 G A TTN Missense_Mutation p.P13199S 0.22 TCGA-AC-A5XS-01 2 202006212 202006212 C G CFLAR Intron 0.24 TCGA-AC-A5XS-01 2 202149751 202149751 C T CASP8 Nonsense_Mutation p.Q398* 0.23 TCGA-AC-A5XS-01 2 203162217 203162217 G C NOP58 Missense_Mutation p.R396T 0.32 deleterious(0) probably_damaging(0.955) TCGA-AC-A5XS-01 2 208765965 208765965 C T PLEKHM3 Intron 0.29 TCGA-AC-A5XS-01 2 210543376 210543376 C G MAP2 Missense_Mutation p.Q115E 0.17 deleterious_low_confidence(0.03) benign(0.012) TCGA-AC-A5XS-01 2 214149243 214149243 G C SPAG16 Silent p.V12V 0.23 TCGA-AC-A5XS-01 2 215914452 215914452 G C ABCA12 Missense_Mutation p.F197L 0.40 tolerated(1) benign(0.001) TCGA-AC-A5XS-01 2 216299422 216299422 C T FN1 Missense_Mutation p.E92K 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-AC-A5XS-01 2 217724240 217724240 C G TNP1 3'UTR 0.22 TCGA-AC-A5XS-01 2 218947953 218947953 G A RUFY4 Missense_Mutation p.M512I 0.12 deleterious(0.03) benign(0.005) TCGA-AC-A5XS-01 2 220193888 220193888 G C RESP18 Silent p.V184V 0.24 TCGA-AC-A5XS-01 2 227729702 227729702 G C RHBDD1 Missense_Mutation p.R98T 0.30 deleterious(0) probably_damaging(0.944) TCGA-AC-A5XS-01 2 231307769 231307769 C G SP100 Silent p.L75L 0.12 TCGA-AC-A5XS-01 2 232646519 232646519 C A PDE6D 5'Flank 0.25 TCGA-AC-A5XS-01 2 232952308 232952308 G A DIS3L2 Missense_Mutation p.D160N 0.17 tolerated(0.4) benign(0.025) TCGA-AC-A5XS-01 2 232995392 232995392 G C DIS3L2 Missense_Mutation p.R222T 0.33 tolerated(0.49) benign(0.004) TCGA-AC-A5XS-01 2 233785116 233785116 G A NGEF Silent p.L236L 0.18 TCGA-AC-A5XS-01 2 234669682 234669682 C G UGT1A8 Intron 0.22 TCGA-AC-A5XS-01 2 238672157 238672157 G T LRRFIP1 Missense_Mutation p.D601Y 0.20 deleterious(0) probably_damaging(0.95) TCGA-AC-A5XS-01 2 238672238 238672238 G C LRRFIP1 Missense_Mutation p.E628Q 0.17 tolerated(0.07) benign(0.04) TCGA-AC-A5XS-01 2 240056103 240056103 G C HDAC4 Missense_Mutation p.L378V 0.28 tolerated(0.3) benign(0.003) TCGA-AC-A5XS-01 2 241835147 241835147 C T C2orf54 Missense_Mutation p.E90K 0.44 deleterious(0.01) benign(0.379) TCGA-AC-A5XS-01 2 241976303 241976303 C G SNED1 Missense_Mutation p.S301W 0.33 deleterious(0) probably_damaging(0.96) TCGA-AC-A5XS-01 2 27657374 27657374 C G NRBP1 Missense_Mutation p.L158V 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-AC-A5XS-01 2 29296409 29296409 C T C2orf71 Missense_Mutation p.G240E 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 2 48573479 48573479 G A FOXN2 Silent p.P42P 0.29 TCGA-AC-A5XS-01 2 54856887 54856887 C T SPTBN1 Silent p.L872L 0.17 TCGA-AC-A5XS-01 2 64321816 64321816 T A PELI1 3'UTR 0.17 TCGA-AC-A5XS-01 2 69642328 69642328 G A NFU1 Missense_Mutation p.S158L 0.14 tolerated(0.11) benign(0.017) TCGA-AC-A5XS-01 2 69687614 69687614 G A RP11-427H3.3 RNA 0.22 TCGA-AC-A5XS-01 2 71036172 71036172 C G CLEC4F 3'UTR 0.22 TCGA-AC-A5XS-01 2 71062733 71062733 G A CD207 Missense_Mutation p.P27S 0.22 tolerated(0.07) benign(0.181) TCGA-AC-A5XS-01 2 85768262 85768262 C T MAT2A Missense_Mutation p.P50S 0.19 deleterious(0.01) possibly_damaging(0.728) TCGA-AC-A5XS-01 2 90078267 90078267 G A IGKV3D-20 Missense_Mutation p.E102K 0.23 deleterious(0.01) possibly_damaging(0.455) TCGA-AC-A5XS-01 2 96072859 96072859 C T FAHD2A Missense_Mutation p.S139F 0.21 deleterious(0.01) possibly_damaging(0.857) TCGA-AC-A5XS-01 2 96959226 96959226 C T SNRNP200 Missense_Mutation p.D622N 0.13 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 2 97911164 97911164 G C ANKRD36 Missense_Mutation p.E1614Q 0.15 deleterious(0.02) possibly_damaging(0.693) TCGA-AC-A5XS-01 2 98750312 98750312 G C VWA3B Missense_Mutation p.E300Q 0.31 tolerated(0.14) benign(0.052) TCGA-AC-A5XS-01 2 99858818 99858818 G C LYG2 3'UTR 0.21 TCGA-AC-A5XS-01 3 10057190 10057190 G C AC022007.5 5'Flank 0.21 TCGA-AC-A5XS-01 3 10138113 10138113 G C FANCD2 Missense_Mutation p.R1381T 0.27 deleterious(0.04) benign(0.211) TCGA-AC-A5XS-01 3 107765161 107765161 C T CD47 3'Flank 0.26 TCGA-AC-A5XS-01 3 110791140 110791140 G A PVRL3 Intron 0.14 TCGA-AC-A5XS-01 3 112642601 112642601 G C CD200R1 Missense_Mutation p.L324V 0.23 deleterious(0) probably_damaging(0.953) TCGA-AC-A5XS-01 3 112710180 112710180 G A GTPBP8 Missense_Mutation p.E112K 0.19 deleterious(0.02) possibly_damaging(0.85) TCGA-AC-A5XS-01 3 122134861 122134861 G C WDR5B 5'UTR 0.26 TCGA-AC-A5XS-01 3 122641112 122641112 G A SEMA5B Silent p.L539L 0.36 TCGA-AC-A5XS-01 3 123666066 123666066 C G CCDC14 Missense_Mutation p.G269A 0.24 tolerated(0.24) benign(0.031) TCGA-AC-A5XS-01 3 124807179 124807179 T A SLC12A8 Missense_Mutation p.R653W 0.24 deleterious(0.01) possibly_damaging(0.812) TCGA-AC-A5XS-01 3 125172706 125172706 C G SNX4 Missense_Mutation p.E380Q 0.25 tolerated(0.6) benign(0.009) TCGA-AC-A5XS-01 3 1269647 1269647 C T CNTN6 Silent p.L110L 0.19 TCGA-AC-A5XS-01 3 128628238 128628238 G C ACAD9 Missense_Mutation p.E513Q 0.25 deleterious(0.01) benign(0.178) TCGA-AC-A5XS-01 3 130095627 130095627 C T COL6A5 Silent p.I205I 0.32 TCGA-AC-A5XS-01 3 130116894 130116894 C T COL6A5 Silent p.D1310D 0.20 TCGA-AC-A5XS-01 3 141497504 141497504 C T GRK7 Silent p.L126L 0.24 TCGA-AC-A5XS-01 3 151107800 151107800 C T MED12L Missense_Mutation p.P1794S 0.28 tolerated(0.07) benign(0.171) TCGA-AC-A5XS-01 3 169504706 169504706 G C MYNN 3'UTR 0.19 TCGA-AC-A5XS-01 3 178922364 178922364 G T PIK3CA Missense_Mutation p.C378F 0.26 tolerated(0.68) benign(0.016) TCGA-AC-A5XS-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.53 deleterious(0.02) probably_damaging(0.959) TCGA-AC-A5XS-01 3 178936092 178936092 A G PIK3CA Missense_Mutation p.E545G 0.52 deleterious(0.01) probably_damaging(0.989) TCGA-AC-A5XS-01 3 183530227 183530227 G C YEATS2 3'UTR 0.16 TCGA-AC-A5XS-01 3 183977444 183977444 G T CAMK2N2 3'UTR 0.30 TCGA-AC-A5XS-01 3 196842906 196842906 G C DLG1 Missense_Mutation p.F478L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A5XS-01 3 32208886 32208886 C G GPD1L 3'UTR 0.18 TCGA-AC-A5XS-01 3 33134226 33134226 G A TMPPE 3'UTR 0.27 TCGA-AC-A5XS-01 3 38454474 38454474 C G XYLB Missense_Mutation p.I527M 0.60 tolerated(0.07) benign(0.299) TCGA-AC-A5XS-01 3 45869969 45869969 G A LZTFL1 Silent p.L247L 0.22 TCGA-AC-A5XS-01 3 46449777 46449777 C G CCRL2 Silent p.L81L 0.21 TCGA-AC-A5XS-01 3 46450227 46450227 C G CCRL2 Silent p.L231L 0.21 TCGA-AC-A5XS-01 3 47098919 47098919 C T SETD2 Missense_Mutation p.E2119K 0.22 deleterious(0) probably_damaging(0.937) TCGA-AC-A5XS-01 3 48459322 48459322 G A PLXNB1 Silent p.S1124S 0.31 TCGA-AC-A5XS-01 3 50357515 50357515 C A HYAL2 Missense_Mutation p.D136Y 0.25 deleterious(0) possibly_damaging(0.707) TCGA-AC-A5XS-01 3 52402819 52402819 A G DNAH1 Missense_Mutation p.K1943R 0.29 benign(0.06) TCGA-AC-A5XS-01 3 58183646 58183646 C G DNASE1L3 Missense_Mutation p.W202C 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 3 97365037 97365037 C T EPHA6 Intron 0.40 TCGA-AC-A5XS-01 3 97888446 97888446 C T OR5H15 Silent p.F301F 0.30 TCGA-AC-A5XS-01 4 113460649 113460649 C A C4orf21 3'UTR 0.25 TCGA-AC-A5XS-01 4 129867259 129867259 C G SCLT1 Missense_Mutation p.E448Q 0.30 tolerated(0.53) benign(0.377) TCGA-AC-A5XS-01 4 149002580 149002580 G A NR3C2 Missense_Mutation p.P957L 0.31 deleterious(0) probably_damaging(0.966) TCGA-AC-A5XS-01 4 155665727 155665727 C T LRAT Silent p.D83D 0.27 TCGA-AC-A5XS-01 4 187130353 187130353 C T CYP4V2 Silent p.F444F 0.39 TCGA-AC-A5XS-01 4 20731719 20731719 C T KCNIP4 Missense_Mutation p.E247K 0.16 deleterious(0.03) benign(0.111) TCGA-AC-A5XS-01 4 2275900 2275900 C T ZFYVE28 Missense_Mutation p.E699K 0.34 deleterious(0.03) benign(0.211) TCGA-AC-A5XS-01 4 25785868 25785868 C T SEL1L3 Missense_Mutation p.M754I 0.11 deleterious(0.01) probably_damaging(0.91) TCGA-AC-A5XS-01 4 3769694 3769694 G C ADRA2C Missense_Mutation p.R454P 0.19 deleterious(0) unknown(0) TCGA-AC-A5XS-01 4 73161390 73161390 G A ADAMTS3 Nonsense_Mutation p.Q902* 0.15 TCGA-AC-A5XS-01 4 83552510 83552510 C G SCD5 Silent p.R321R 0.42 TCGA-AC-A5XS-01 5 10250669 10250669 G A CCT5 Intron 0.21 TCGA-AC-A5XS-01 5 110809044 110809044 G C CAMK4 Missense_Mutation p.E221Q 0.32 deleterious(0.02) probably_damaging(0.985) TCGA-AC-A5XS-01 5 118529541 118529541 C G DMXL1 Missense_Mutation p.Q2445E 0.30 tolerated(0.74) benign(0.003) TCGA-AC-A5XS-01 5 1239625 1239625 C G SLC6A18 Missense_Mutation p.L265V 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-AC-A5XS-01 5 131978961 131978961 G A RAD50 3'UTR 0.20 TCGA-AC-A5XS-01 5 132362241 132362241 C G ZCCHC10 5'UTR 0.26 TCGA-AC-A5XS-01 5 1324880 1324880 G C CLPTM1L Missense_Mutation p.Q399E 0.19 tolerated(0.56) benign(0.041) TCGA-AC-A5XS-01 5 137622292 137622292 C G CDC25C Missense_Mutation p.E352Q 0.19 tolerated(0.08) possibly_damaging(0.773) TCGA-AC-A5XS-01 5 139930428 139930428 C T SRA1 Missense_Mutation p.E190K 0.32 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 5 139940226 139940226 G C APBB3 Missense_Mutation p.Q351E 0.24 tolerated(0.17) probably_damaging(0.925) TCGA-AC-A5XS-01 5 139940249 139940249 G C APBB3 Missense_Mutation p.S343C 0.32 deleterious(0) probably_damaging(0.989) TCGA-AC-A5XS-01 5 140346930 140346930 C G PCDHAC2 Missense_Mutation p.F193L 0.47 tolerated(0.08) possibly_damaging(0.649) TCGA-AC-A5XS-01 5 141244620 141244620 C G PCDH1 Missense_Mutation p.E426Q 0.28 tolerated(0.15) probably_damaging(0.974) TCGA-AC-A5XS-01 5 141319285 141319285 C T KIAA0141 3'UTR 0.26 TCGA-AC-A5XS-01 5 145650535 145650535 G C RBM27 Missense_Mutation p.D904H 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A5XS-01 5 145651214 145651214 G C RBM27 Missense_Mutation p.E989Q 0.19 deleterious(0.04) benign(0.085) TCGA-AC-A5XS-01 5 160061445 160061445 C T ATP10B Missense_Mutation p.D433N 0.29 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 5 175722213 175722213 G A SIMC1 Missense_Mutation p.E104K 0.16 tolerated(0.09) possibly_damaging(0.689) TCGA-AC-A5XS-01 5 179147436 179147436 C A CANX Missense_Mutation p.P353T 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 5 179663360 179663360 G A MAPK9 3'UTR 0.28 TCGA-AC-A5XS-01 5 21751325 21751325 G A CDH12 3'UTR 0.28 TCGA-AC-A5XS-01 5 38493888 38493888 C G LIFR Splice_Site p.X629_splice 0.29 TCGA-AC-A5XS-01 5 40692106 40692106 G T PTGER4 Missense_Mutation p.D365Y 0.19 deleterious(0) possibly_damaging(0.653) TCGA-AC-A5XS-01 5 5461881 5461881 G A KIAA0947 Missense_Mutation p.E812K 0.15 deleterious(0.04) possibly_damaging(0.713) TCGA-AC-A5XS-01 5 5462876 5462876 G A KIAA0947 Silent p.V1143V 0.28 TCGA-AC-A5XS-01 5 63803631 63803631 G A RGS7BP Missense_Mutation p.E87K 0.17 deleterious(0.03) possibly_damaging(0.486) TCGA-AC-A5XS-01 5 83238880 83238880 C T EDIL3 3'UTR 0.23 TCGA-AC-A5XS-01 5 90073826 90073826 G A GPR98 Missense_Mutation p.R4211Q 0.26 benign(0.039) TCGA-AC-A5XS-01 5 93856326 93856326 G C KIAA0825 Silent p.L199L 0.36 TCGA-AC-A5XS-01 5 95726460 95726460 G A PCSK1 3'UTR 0.32 TCGA-AC-A5XS-01 5 96082070 96082070 G A CAST Missense_Mutation p.E368K 0.27 tolerated(1) benign(0.005) TCGA-AC-A5XS-01 5 98229240 98229240 G C CHD1 Missense_Mutation p.S624C 0.28 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 6 109786851 109786851 C G ZBTB24 3'UTR 0.43 TCGA-AC-A5XS-01 6 112440398 112440398 C T LAMA4 Silent p.L1594L 0.34 TCGA-AC-A5XS-01 6 116977990 116977990 C G ZUFSP Missense_Mutation p.G273A 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-AC-A5XS-01 6 131919505 131919505 G A MED23 Silent p.L843L 0.24 TCGA-AC-A5XS-01 6 133055625 133055625 C A VNN3 Silent p.A69A 0.23 TCGA-AC-A5XS-01 6 143747032 143747032 G A ADAT2 3'Flank 0.38 TCGA-AC-A5XS-01 6 145069573 145069573 G T UTRN Nonsense_Mutation p.E2711* 0.53 TCGA-AC-A5XS-01 6 151773611 151773611 C G C6orf211 5'UTR 0.48 TCGA-AC-A5XS-01 6 161574409 161574409 G A AGPAT4 Silent p.F211F 0.44 TCGA-AC-A5XS-01 6 167754552 167754552 C T TTLL2 Silent p.N388N 0.40 TCGA-AC-A5XS-01 6 24134688 24134688 G A NRSN1 Missense_Mutation p.E45K 0.18 tolerated(0.14) benign(0.397) TCGA-AC-A5XS-01 6 24698255 24698255 G A ACOT13 Missense_Mutation p.E76K 0.08 tolerated(0.27) benign(0.081) TCGA-AC-A5XS-01 6 26189128 26189128 C T HIST1H4D Silent p.L59L 0.33 TCGA-AC-A5XS-01 6 26189135 26189135 C A HIST1H4D Missense_Mutation p.G57V 0.20 deleterious(0.01) benign(0.222) TCGA-AC-A5XS-01 6 26216716 26216716 A T HIST1H2BG Missense_Mutation p.D52E 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.693) TCGA-AC-A5XS-01 6 28056849 28056849 C T ZNF165 Silent p.F353F 0.19 TCGA-AC-A5XS-01 6 28093431 28093431 G C ZSCAN16 Silent p.L70L 0.14 TCGA-AC-A5XS-01 6 28227134 28227134 C T NKAPL 5'UTR 0.11 TCGA-AC-A5XS-01 6 29633972 29633972 G A MOG Silent p.A160A 0.22 TCGA-AC-A5XS-01 6 30546270 30546270 G C ABCF1 Silent p.L135L 0.18 TCGA-AC-A5XS-01 6 31110858 31110858 C G CCHCR1 Missense_Mutation p.L791F 0.15 tolerated(0.12) benign(0.088) TCGA-AC-A5XS-01 6 31465959 31465959 G A MICB 5'UTR 0.21 TCGA-AC-A5XS-01 6 31598541 31598541 C G PRRC2A Missense_Mutation p.L810V 0.24 benign(0.364) TCGA-AC-A5XS-01 6 31599061 31599061 G A PRRC2A Missense_Mutation p.D871N 0.14 possibly_damaging(0.539) TCGA-AC-A5XS-01 6 31627618 31627618 G C C6orf47 Missense_Mutation p.S36W 0.13 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-AC-A5XS-01 6 31779414 31779414 C G HSPA1L Missense_Mutation p.E112D 0.18 deleterious_low_confidence(0.03) benign(0.005) TCGA-AC-A5XS-01 6 33168224 33168224 G A RXRB Silent p.L10L 0.15 TCGA-AC-A5XS-01 6 33169119 33169119 G A SLC39A7 Missense_Mutation p.D33N 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-AC-A5XS-01 6 33589434 33589434 G A ITPR3 Missense_Mutation p.E19K 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-AC-A5XS-01 6 33740295 33740295 G A LEMD2 3'UTR 0.27 TCGA-AC-A5XS-01 6 35479428 35479428 C T TULP1 Missense_Mutation p.D116N 0.17 deleterious_low_confidence(0.02) benign(0.157) TCGA-AC-A5XS-01 6 35802834 35802834 C A SRPK1 3'UTR 0.18 TCGA-AC-A5XS-01 6 36493391 36493391 C T STK38 Missense_Mutation p.E54K 0.15 tolerated(0.16) benign(0.005) TCGA-AC-A5XS-01 6 38863806 38863806 C T DNAH8 Intron 0.14 TCGA-AC-A5XS-01 6 39158629 39158629 G C KCNK5 3'UTR 0.15 TCGA-AC-A5XS-01 6 42978724 42978724 G C PPP2R5D Missense_Mutation p.E554Q 0.21 tolerated(0.11) benign(0.04) TCGA-AC-A5XS-01 6 51893112 51893112 C T PKHD1 Missense_Mutation p.M1134I 0.35 deleterious(0.04) benign(0) TCGA-AC-A5XS-01 6 56484598 56484598 C T DST Intron 0.32 TCGA-AC-A5XS-01 6 72892561 72892561 G C RIMS1 Missense_Mutation p.E463Q 0.22 deleterious(0.01) benign(0.111) TCGA-AC-A5XS-01 6 74227879 74227879 C G EEF1A1 Missense_Mutation p.D380H 0.19 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-AC-A5XS-01 6 76631396 76631396 C T IMPG1 3'UTR 0.21 TCGA-AC-A5XS-01 6 81053545 81053545 G C BCKDHB 3'UTR 0.21 TCGA-AC-A5XS-01 6 96657056 96657056 C T FUT9 3'UTR 0.29 TCGA-AC-A5XS-01 7 100004914 100004914 C T ZCWPW1 Missense_Mutation p.M334I 0.16 tolerated(0.15) possibly_damaging(0.759) TCGA-AC-A5XS-01 7 106924090 106924090 G C COG5 Missense_Mutation p.N498K 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-AC-A5XS-01 7 111580176 111580176 C T DOCK4 Silent p.L322L 0.27 TCGA-AC-A5XS-01 7 120496758 120496758 G A TSPAN12 Silent p.L20L 0.12 TCGA-AC-A5XS-01 7 120969831 120969831 G A WNT16 Silent p.P102P 0.11 TCGA-AC-A5XS-01 7 121960230 121960230 C T CADPS2 Missense_Mutation p.E1294K 0.21 tolerated_low_confidence(0.06) benign(0.027) TCGA-AC-A5XS-01 7 128852289 128852289 C T SMO Silent p.F787F 0.42 TCGA-AC-A5XS-01 7 132481277 132481277 C G CHCHD3 Missense_Mutation p.E196Q 0.19 tolerated(0.52) benign(0.005) TCGA-AC-A5XS-01 7 140706093 140706093 C T MRPS33 3'UTR 0.29 TCGA-AC-A5XS-01 7 142161990 142161990 G A TRBV6-6 Silent p.L95L 0.21 TCGA-AC-A5XS-01 7 142985529 142985529 G A CASP2 5'UTR 0.22 TCGA-AC-A5XS-01 7 148117965 148117965 G C CNTNAP2 3'UTR 0.17 TCGA-AC-A5XS-01 7 149521701 149521701 C T SSPO RNA 0.22 TCGA-AC-A5XS-01 7 150704043 150704043 G A NOS3 Silent p.K629K 0.35 TCGA-AC-A5XS-01 7 150839697 150839697 C T AGAP3 Missense_Mutation p.S750F 0.27 tolerated(0.05) benign(0.005) TCGA-AC-A5XS-01 7 154659788 154659788 G A DPP6 Missense_Mutation p.E600K 0.31 tolerated(0.9) benign(0.001) TCGA-AC-A5XS-01 7 155301659 155301659 C G CNPY1 Missense_Mutation p.G25A 0.21 tolerated(0.08) benign(0.257) TCGA-AC-A5XS-01 7 157024008 157024008 G C UBE3C Missense_Mutation p.R823T 0.12 deleterious(0.01) benign(0.236) TCGA-AC-A5XS-01 7 1887247 1887247 C G AC110781.3 Silent p.L164L 0.23 TCGA-AC-A5XS-01 7 195707 195707 C T FAM20C Silent p.L253L 0.28 TCGA-AC-A5XS-01 7 22771136 22771136 C T IL6 Silent p.L195L 0.41 TCGA-AC-A5XS-01 7 2703421 2703421 C T TTYH3 3'UTR 0.25 TCGA-AC-A5XS-01 7 27222523 27222523 G C HOXA11 Silent p.L278L 0.26 TCGA-AC-A5XS-01 7 37298952 37298952 G A ELMO1 Nonsense_Mutation p.Q83* 0.23 TCGA-AC-A5XS-01 7 44185164 44185164 C G GCK Missense_Mutation p.E396D 0.25 tolerated(0.12) benign(0.001) TCGA-AC-A5XS-01 7 6565861 6565861 G A GRID2IP Silent p.L305L 0.27 TCGA-AC-A5XS-01 7 73008622 73008622 G C MLXIPL Missense_Mutation p.L808V 0.29 deleterious(0) probably_damaging(0.997) TCGA-AC-A5XS-01 7 74299907 74299907 C T STAG3L2 RNA 0.18 TCGA-AC-A5XS-01 7 74524806 74524806 C T GTF2IRD2B Missense_Mutation p.S17L 0.17 deleterious_low_confidence(0) benign(0.09) TCGA-AC-A5XS-01 7 86509705 86509705 G C KIAA1324L 3'UTR 0.22 TCGA-AC-A5XS-01 7 86974588 86974588 C T CROT 5'Flank 0.28 TCGA-AC-A5XS-01 7 91706193 91706193 G C AKAP9 Missense_Mutation p.E2213Q 0.14 probably_damaging(0.999) TCGA-AC-A5XS-01 7 92244466 92244466 C T CDK6 Silent p.L323L 0.23 TCGA-AC-A5XS-01 7 92763198 92763198 C T SAMD9L Nonsense_Mutation p.W696* 0.11 TCGA-AC-A5XS-01 7 95115434 95115434 G C ASB4 Missense_Mutation p.E51Q 0.24 tolerated(0.15) possibly_damaging(0.806) TCGA-AC-A5XS-01 7 99022941 99022941 C G ATP5J2-PTCD1 Missense_Mutation p.R454T 0.18 tolerated(0.26) benign(0.033) TCGA-AC-A5XS-01 8 105509203 105509203 C T LRP12 Missense_Mutation p.R526K 0.19 tolerated(0.73) probably_damaging(0.951) TCGA-AC-A5XS-01 8 11667181 11667181 C T FDFT1 Missense_Mutation p.A68V 0.22 tolerated(0.06) possibly_damaging(0.785) TCGA-AC-A5XS-01 8 131066688 131066688 C T ASAP1 3'UTR 0.31 TCGA-AC-A5XS-01 8 144944811 144944811 C G EPPK1 Missense_Mutation p.E871Q 0.31 possibly_damaging(0.756) TCGA-AC-A5XS-01 8 145541971 145541971 G C DGAT1 Missense_Mutation p.S210C 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 8 145541991 145541991 G A DGAT1 Silent p.I203I 0.31 TCGA-AC-A5XS-01 8 146063470 146063470 C T ZNF7 Intron 0.32 TCGA-AC-A5XS-01 8 22102670 22102670 G T POLR3D 5'Flank 0.43 TCGA-AC-A5XS-01 8 24813739 24813739 G C CTD-2168K21.2 5'Flank 0.19 TCGA-AC-A5XS-01 8 48843275 48843275 G T PRKDC Missense_Mutation p.P617T 0.22 possibly_damaging(0.596) TCGA-AC-A5XS-01 8 56438296 56438296 T A XKR4 3'UTR 0.60 TCGA-AC-A5XS-01 8 61653879 61653879 G C CHD7 5'UTR 0.27 TCGA-AC-A5XS-01 8 68087705 68087705 C T CSPP1 Intron 0.19 TCGA-AC-A5XS-01 8 69104584 69104584 C A PREX2 Silent p.L1476L 0.18 TCGA-AC-A5XS-01 8 72111005 72111005 C G EYA1 3'UTR 0.33 TCGA-AC-A5XS-01 8 73958227 73958227 G A TERF1 Missense_Mutation p.R392K 0.09 tolerated(1) benign(0.014) TCGA-AC-A5XS-01 8 8561143 8561143 C A CLDN23 3'UTR 0.30 TCGA-AC-A5XS-01 8 85785560 85785560 C T RALYL Nonsense_Mutation p.Q218* 0.20 TCGA-AC-A5XS-01 8 88394871 88394871 C T CNBD1 3'UTR 0.42 TCGA-AC-A5XS-01 8 89339424 89339424 G A MMP16 Silent p.L4L 0.28 TCGA-AC-A5XS-01 9 111625373 111625373 G T ACTL7A Silent p.L257L 0.28 TCGA-AC-A5XS-01 9 116823786 116823786 C T AMBP Silent p.E257E 0.22 TCGA-AC-A5XS-01 9 125315550 125315550 C T OR1N2 Silent p.L34L 0.22 TCGA-AC-A5XS-01 9 130826063 130826063 C G NAIF1 Missense_Mutation p.D210H 0.21 deleterious_low_confidence(0.01) benign(0.28) TCGA-AC-A5XS-01 9 130887650 130887650 C T PTGES2 Missense_Mutation p.R117Q 0.25 deleterious(0) probably_damaging(1) TCGA-AC-A5XS-01 9 130981478 130981478 C T DNM1 Missense_Mutation p.S179F 0.33 deleterious(0) possibly_damaging(0.718) TCGA-AC-A5XS-01 9 132572382 132572383 - T TOR1B 3'UTR 0.17 TCGA-AC-A5XS-01 9 137777128 137777128 G C FCN2 Silent p.L115L 0.22 TCGA-AC-A5XS-01 9 138702977 138702977 G A CAMSAP1 3'UTR 0.20 TCGA-AC-A5XS-01 9 139244164 139244164 C T GPSM1 Silent p.G468G 0.27 TCGA-AC-A5XS-01 9 140243649 140243649 C G EXD3 Silent p.G581G 0.20 TCGA-AC-A5XS-01 9 140622927 140622927 C A EHMT1 Missense_Mutation p.H257N 0.28 deleterious_low_confidence(0.04) benign(0.4) TCGA-AC-A5XS-01 9 16417220 16417220 G C BNC2 3'UTR 0.24 TCGA-AC-A5XS-01 9 2837402 2837402 C G KIAA0020 Splice_Site p.X28_splice 0.21 TCGA-AC-A5XS-01 9 33462162 33462162 C T NOL6 3'UTR 0.22 TCGA-AC-A5XS-01 9 372225 372225 C G DOCK8 Missense_Mutation p.S683C 0.13 deleterious(0) possibly_damaging(0.838) TCGA-AC-A5XS-01 9 72520983 72520983 G A C9orf135 Silent p.G207G 0.26 TCGA-AC-A5XS-01 9 74061697 74061697 C T TRPM3 Missense_Mutation p.E19K 0.21 tolerated_low_confidence(0.09) benign(0.016) TCGA-AC-A5XS-01 9 94484948 94484948 G A ROR2 3'UTR 0.15 TCGA-AC-A5XS-01 9 94486604 94486604 G A ROR2 Silent p.L724L 0.17 TCGA-AC-A5XS-01 9 95397502 95397502 G C IPPK Missense_Mutation p.I335M 0.11 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XS-01 9 96213286 96213286 C G FAM120AOS Intron 0.42 TCGA-AC-A5XS-01 X 100351294 100351294 G T TMEM35 3'UTR 0.23 TCGA-AC-A5XS-01 X 101138400 101138400 C T ZMAT1 3'UTR 0.19 TCGA-AC-A5XS-01 X 12627931 12627931 G C FRMPD4 Missense_Mutation p.D84H 0.33 tolerated(0.11) probably_damaging(0.996) TCGA-AC-A5XS-01 X 127185426 127185426 C G ACTRT1 Missense_Mutation p.E254Q 0.24 tolerated(0.85) benign(0.002) TCGA-AC-A5XS-01 X 128927985 128927985 G A SASH3 3'UTR 0.35 TCGA-AC-A5XS-01 X 129215412 129215412 C G ELF4 5'UTR 0.38 TCGA-AC-A5XS-01 X 13618113 13618113 G T EGFL6 Missense_Mutation p.M100I 0.15 tolerated(0.1) benign(0) TCGA-AC-A5XS-01 X 140993796 140993796 G A MAGEC1 Silent p.V202V 0.08 TCGA-AC-A5XS-01 X 150891425 150891425 G A FATE1 3'UTR 0.29 TCGA-AC-A5XS-01 X 152686833 152686833 C T ZFP92 Missense_Mutation p.S333L 0.19 deleterious(0) probably_damaging(0.974) TCGA-AC-A5XS-01 X 17165855 17165855 C T REPS2 3'UTR 0.32 TCGA-AC-A5XS-01 X 19039286 19039286 C T GPR64 Silent p.L193L 0.17 TCGA-AC-A5XS-01 X 30849311 30849311 C T TAB3 3'UTR 0.28 TCGA-AC-A5XS-01 X 3241061 3241061 C T MXRA5 Missense_Mutation p.D889N 0.12 deleterious(0.03) possibly_damaging(0.601) TCGA-AC-A5XS-01 X 44703469 44703469 C G DUSP21 Missense_Mutation p.L31V 0.17 tolerated(0.05) benign(0.206) TCGA-AC-A5XS-01 X 48819382 48819382 C G KCND1 3'UTR 0.28 TCGA-AC-A5XS-01 X 49958337 49958337 C G AKAP4 Missense_Mutation p.D343H 0.08 deleterious(0) probably_damaging(0.954) TCGA-AC-A5XS-01 X 53561010 53561010 C T HUWE1 Missense_Mutation p.R4327Q 0.28 unknown(0) TCGA-AC-A5XS-01 X 54319422 54319422 G C WNK3 Missense_Mutation p.Q646E 0.29 deleterious(0.04) benign(0.009) TCGA-AC-A5XS-01 X 54321119 54321119 C T WNK3 Silent p.Q520Q 0.28 TCGA-AC-A5XS-01 X 54777663 54777663 C G ITIH6 Missense_Mutation p.G1168A 0.04 tolerated(0.24) probably_damaging(0.931) TCGA-AC-A5XS-01 X 64743518 64743518 G A LAS1L Missense_Mutation p.S457F 0.27 deleterious(0.02) benign(0.287) TCGA-AC-A5XS-01 X 67939204 67939204 A C STARD8 Missense_Mutation p.E618A 0.15 deleterious(0) probably_damaging(0.99) TCGA-AC-A5XS-01 X 70586249 70586249 G A TAF1 Missense_Mutation p.D29N 0.22 tolerated_low_confidence(0.1) benign(0.35) TCGA-AC-A5XS-01 X 70643863 70643863 C T TAF1 Missense_Mutation p.P1559S 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-AC-A5XS-01 X 80064047 80064047 G A BRWD3 Silent p.F57F 0.22 TCGA-AC-A5XS-01 X 80377094 80377094 G A HMGN5 5'UTR 0.17 TCGA-AC-A5XS-01 X 89177796 89177796 G A TGIF2LX Missense_Mutation p.E238K 0.25 deleterious(0.03) benign(0.063) TCGA-AC-A5XU-01 10 72291097 72291097 G A PALD1 Missense_Mutation p.D174N 0.20 tolerated(0.08) benign(0.138) TCGA-AC-A5XU-01 10 72291103 72291103 G T PALD1 Missense_Mutation p.D176Y 0.18 deleterious(0) probably_damaging(0.966) TCGA-AC-A5XU-01 10 89503258 89503258 G A PAPSS2 Missense_Mutation p.G451S 0.43 deleterious(0) probably_damaging(1) TCGA-AC-A5XU-01 10 91066002 91066003 - G IFIT2 Frame_Shift_Ins p.N99Kfs*27 0.24 TCGA-AC-A5XU-01 11 10818770 10818770 C T EIF4G2 3'UTR 0.18 TCGA-AC-A5XU-01 11 124310646 124310646 G T OR8B8 Silent p.S112S 0.15 TCGA-AC-A5XU-01 11 132177693 132177693 C T NTM Missense_Mutation p.R213W 0.37 deleterious(0) probably_damaging(0.969) TCGA-AC-A5XU-01 11 3061080 3061080 C A CARS Silent p.T179T 0.21 TCGA-AC-A5XU-01 11 65417234 65417234 C A SIPA1 Missense_Mutation p.P882T 0.29 tolerated(0.07) benign(0.004) TCGA-AC-A5XU-01 11 6640648 6640648 T A TPP1 5'UTR 0.15 TCGA-AC-A5XU-01 11 7324590 7324590 C T SYT9 Missense_Mutation p.R156C 0.14 deleterious(0) probably_damaging(0.98) TCGA-AC-A5XU-01 11 92620185 92620185 G T FAT3 Silent p.P4319P 0.23 TCGA-AC-A5XU-01 12 29630469 29630469 C T OVCH1 Missense_Mutation p.R371H 0.38 deleterious(0.02) benign(0.08) TCGA-AC-A5XU-01 12 49220166 49220166 G A CACNB3 Silent p.E253E 0.15 TCGA-AC-A5XU-01 12 62783289 62783289 G A USP15 Missense_Mutation p.D518N 0.08 tolerated(0.09) benign(0.101) TCGA-AC-A5XU-01 12 80762006 80762006 C T OTOGL Missense_Mutation p.P2169S 0.12 tolerated(0.57) benign(0.002) TCGA-AC-A5XU-01 13 102568820 102568820 C T FGF14 Intron 0.08 TCGA-AC-A5XU-01 13 25029332 25029332 G C PARP4 Missense_Mutation p.Q861E 0.39 tolerated(0.06) benign(0.196) TCGA-AC-A5XU-01 13 41767262 41767262 G C KBTBD7 Missense_Mutation p.H378D 0.08 tolerated(0.52) benign(0.003) TCGA-AC-A5XU-01 14 23313595 23313595 C T MMP14 Missense_Mutation p.R343W 0.18 deleterious(0) probably_damaging(1) TCGA-AC-A5XU-01 14 24610303 24610314 CCAACGGAGGCA - EMC9 Splice_Site p.X66_splice 0.47 TCGA-AC-A5XU-01 14 24909729 24909729 T G SDR39U1 Intron 0.33 TCGA-AC-A5XU-01 14 70245157 70245157 A G SLC10A1 Missense_Mutation p.I279T 0.61 deleterious(0.01) benign(0.12) TCGA-AC-A5XU-01 15 78305170 78305170 T A TBC1D2B Silent p.L755L 0.21 TCGA-AC-A5XU-01 16 18437831 18437831 C G RP11-1212A22.1 RNA 0.32 TCGA-AC-A5XU-01 16 4834057 4834057 G A SEPT12 Silent p.I129I 0.10 TCGA-AC-A5XU-01 16 89226810 89226810 G A ACSF3 3'Flank 0.43 TCGA-AC-A5XU-01 17 17880908 17880908 G A LRRC48 5'UTR 0.25 TCGA-AC-A5XU-01 17 28384802 28384802 C T EFCAB5 Missense_Mutation p.T825I 0.28 deleterious(0) probably_damaging(1) TCGA-AC-A5XU-01 17 30303623 30303623 G C SUZ12 Missense_Mutation p.D303H 0.26 deleterious(0) probably_damaging(0.91) TCGA-AC-A5XU-01 17 32965926 32965926 G T TMEM132E 3'UTR 0.20 TCGA-AC-A5XU-01 17 51902516 51902516 A G KIF2B 3'UTR 0.17 TCGA-AC-A5XU-01 17 66267591 66267591 G A SLC16A6 Missense_Mutation p.S237F 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A5XU-01 17 7574002 7574002 C G TP53 Missense_Mutation p.R342P 0.44 deleterious(0.01) possibly_damaging(0.889) TCGA-AC-A5XU-01 17 76454727 76454727 C T DNAH17 Silent p.A3285A 0.06 TCGA-AC-A5XU-01 18 52608233 52608233 C A CCDC68 Missense_Mutation p.A67S 0.12 tolerated(0.46) benign(0.01) TCGA-AC-A5XU-01 18 61637367 61637367 G A SERPINB8 5'UTR 0.06 TCGA-AC-A5XU-01 19 10657512 10657512 C T ATG4D Intron 0.20 TCGA-AC-A5XU-01 19 11891609 11891609 C T ZNF441 Nonsense_Mutation p.R324* 0.49 TCGA-AC-A5XU-01 19 1474870 1474872 GAC - C19orf25 3'UTR 0.35 TCGA-AC-A5XU-01 19 18680156 18680156 C T KXD1 3'UTR 0.17 TCGA-AC-A5XU-01 19 36674362 36674362 C T ZNF565 Missense_Mutation p.C169Y 0.50 tolerated(0.06) probably_damaging(0.998) TCGA-AC-A5XU-01 19 38571945 38571945 C G SIPA1L3 5'UTR 0.12 TCGA-AC-A5XU-01 19 40478093 40478093 G A PSMC4 Missense_Mutation p.G26D 0.06 tolerated_low_confidence(0.4) benign(0.028) TCGA-AC-A5XU-01 19 42875524 42875524 G A MEGF8 Missense_Mutation p.D2320N 0.18 tolerated(0.18) possibly_damaging(0.835) TCGA-AC-A5XU-01 19 49133694 49133694 G A SPHK2 3'Flank 0.15 TCGA-AC-A5XU-01 19 55146552 55146552 C T LILRB1 Intron 0.33 TCGA-AC-A5XU-01 19 57335019 57335019 G A PEG3 Silent p.D141D 0.06 TCGA-AC-A5XU-01 19 58423485 58423485 G A ZNF417 Nonsense_Mutation p.Q36* 0.08 TCGA-AC-A5XU-01 19 7992107 7992107 C T TIMM44 Missense_Mutation p.D442N 0.21 deleterious(0) probably_damaging(0.993) TCGA-AC-A5XU-01 1 11105481 11105481 G T MASP2 Missense_Mutation p.N176K 0.20 deleterious(0) possibly_damaging(0.597) TCGA-AC-A5XU-01 1 118170433 118170433 A C FAM46C 3'UTR 0.39 TCGA-AC-A5XU-01 1 169822809 169822809 A T C1orf112 3'UTR 0.15 TCGA-AC-A5XU-01 1 181767517 181767517 G A CACNA1E Silent p.P2163P 0.21 TCGA-AC-A5XU-01 1 182026756 182026756 G A ZNF648 Silent p.L130L 0.32 TCGA-AC-A5XU-01 1 200939292 200939292 G A KIF21B 3'Flank 0.12 TCGA-AC-A5XU-01 20 42333911 42333911 T A MYBL2 Missense_Mutation p.L473Q 0.21 deleterious(0) probably_damaging(1) TCGA-AC-A5XU-01 20 57598974 57598974 G A TUBB1 Missense_Mutation p.M164I 0.10 tolerated_low_confidence(0.22) benign(0.031) TCGA-AC-A5XU-01 20 61978071 61978071 G A CHRNA4 3'UTR 0.23 TCGA-AC-A5XU-01 21 44270219 44270219 C T WDR4 Silent p.P393P 0.19 TCGA-AC-A5XU-01 22 37325587 37325587 C T CSF2RB Nonsense_Mutation p.Q179* 0.27 TCGA-AC-A5XU-01 2 130898839 130898839 T C CCDC74B Missense_Mutation p.N192S 0.09 deleterious(0) benign(0.066) TCGA-AC-A5XU-01 2 136482769 136482769 T C R3HDM1 3'UTR 0.14 TCGA-AC-A5XU-01 2 152694826 152694826 C A CACNB4 3'UTR 0.14 TCGA-AC-A5XU-01 2 54081561 54081561 A G GPR75 Silent p.S111S 0.37 TCGA-AC-A5XU-01 3 145912230 145912230 A C PLSCR4 Missense_Mutation p.F320V 0.89 deleterious(0) probably_damaging(0.92) TCGA-AC-A5XU-01 3 64536720 64536720 C T ADAMTS9 Missense_Mutation p.E1573K 0.22 tolerated(0.94) benign(0.009) TCGA-AC-A5XU-01 3 67059955 67059955 T - KBTBD8 3'UTR 0.24 TCGA-AC-A5XU-01 3 9406884 9406884 A G THUMPD3 Silent p.V44V 0.30 TCGA-AC-A5XU-01 4 13617097 13617097 C T BOD1L1 Missense_Mutation p.R133Q 0.06 probably_damaging(1) TCGA-AC-A5XU-01 4 20731675 20731675 G A KCNIP4 3'UTR 0.12 TCGA-AC-A5XU-01 4 57250392 57250392 C G AASDH Missense_Mutation p.C25S 0.25 tolerated(0.23) benign(0.434) TCGA-AC-A5XU-01 4 6304103 6304103 G A WFS1 Missense_Mutation p.V861M 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-AC-A5XU-01 5 112257927 112257927 C A REEP5 5'UTR 0.18 TCGA-AC-A5XU-01 5 121790167 121790167 G A SNCAIP Intron 0.13 TCGA-AC-A5XU-01 5 132029411 132029411 C A KIF3A 3'UTR 0.38 TCGA-AC-A5XU-01 5 140203028 140203028 C T PCDHA5 Silent p.D556D 0.30 TCGA-AC-A5XU-01 5 150859096 150859096 C A SLC36A1 Intron 0.18 TCGA-AC-A5XU-01 5 156482365 156482365 G A HAVCR1 Missense_Mutation p.R76C 0.31 deleterious(0.02) benign(0.123) TCGA-AC-A5XU-01 5 52097792 52097792 C T PELO 3'UTR 0.30 TCGA-AC-A5XU-01 5 52248266 52248266 G T ITGA1 Missense_Mutation p.K1175N 0.14 deleterious(0.01) benign(0.149) TCGA-AC-A5XU-01 5 54637558 54637558 C T SKIV2L2 Missense_Mutation p.A247V 0.08 deleterious(0.01) possibly_damaging(0.906) TCGA-AC-A5XU-01 6 131199300 131199300 G A EPB41L2 Missense_Mutation p.R663C 0.12 deleterious(0) probably_damaging(0.995) TCGA-AC-A5XU-01 6 150057610 150057610 C T NUP43 Missense_Mutation p.E263K 0.08 deleterious(0.03) probably_damaging(0.925) TCGA-AC-A5XU-01 6 159457355 159457355 C T TAGAP Missense_Mutation p.R567H 0.16 tolerated(0.14) benign(0.005) TCGA-AC-A5XU-01 6 26156903 26156903 G A HIST1H1E Silent p.Q95Q 0.11 TCGA-AC-A5XU-01 6 29589896 29589896 G A GABBR1 Silent p.P350P 0.22 TCGA-AC-A5XU-01 6 38697703 38697703 C T DNAH8 Intron 0.11 TCGA-AC-A5XU-01 6 62390087 62390087 T C KHDRBS2 3'UTR 0.42 TCGA-AC-A5XU-01 7 115850679 115850679 G T TES 5'UTR 0.22 TCGA-AC-A5XU-01 7 120629843 120629843 C A CPED1 Silent p.T56T 0.13 TCGA-AC-A5XU-01 7 128441410 128441410 G T CCDC136 Nonsense_Mutation p.E173* 0.62 TCGA-AC-A5XU-01 7 128484994 128484994 C T FLNC Missense_Mutation p.R1159W 0.05 deleterious(0.03) possibly_damaging(0.849) TCGA-AC-A5XU-01 7 128486804 128486804 C T FLNC Missense_Mutation p.A1378V 0.07 deleterious(0) probably_damaging(0.999) TCGA-AC-A5XU-01 7 154002495 154002495 C A DPP6 Intron 0.18 TCGA-AC-A5XU-01 7 154672641 154672641 G A DPP6 Missense_Mutation p.V708M 0.17 deleterious(0) probably_damaging(0.997) TCGA-AC-A5XU-01 7 25176206 25176206 G A C7orf31 Silent p.A386A 0.08 TCGA-AC-A5XU-01 7 36194381 36194381 G T EEPD1 Missense_Mutation p.V150L 0.57 tolerated(0.19) benign(0.084) TCGA-AC-A5XU-01 7 37780058 37780058 C A GPR141 Silent p.I21I 0.08 TCGA-AC-A5XU-01 7 99696938 99696938 G C MCM7 Missense_Mutation p.P122R 0.16 tolerated(0.06) benign(0.021) TCGA-AC-A5XU-01 8 133076128 133076128 G T OC90 5'Flank 0.23 TCGA-AC-A5XU-01 8 134471968 134471968 G A ST3GAL1 3'UTR 0.09 TCGA-AC-A5XU-01 8 144732992 144732992 G A ZNF623 Missense_Mutation p.R317K 0.29 tolerated(1) probably_damaging(0.92) TCGA-AC-A5XU-01 8 144734015 144734015 G A ZNF623 3'UTR 0.28 TCGA-AC-A5XU-01 8 144735566 144735566 G C ZNF623 3'UTR 0.34 TCGA-AC-A5XU-01 8 1616523 1616523 G A DLGAP2 Silent p.T533T 0.15 TCGA-AC-A5XU-01 9 112629836 112629836 G A PALM2-AKAP2 Silent p.L37L 0.09 TCGA-AC-A5XU-01 9 127572494 127572494 G A OLFML2A Missense_Mutation p.V588M 0.24 deleterious(0) possibly_damaging(0.867) TCGA-AC-A5XU-01 9 79634965 79634965 C T FOXB2 Missense_Mutation p.P132L 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-AC-A5XU-01 9 84530389 84530389 G A SPATA31D5P RNA 0.31 TCGA-AC-A5XU-01 9 91609996 91609996 A G C9orf47 3'UTR 0.33 TCGA-AC-A5XU-01 9 95177547 95177547 C G OMD Missense_Mutation p.D385H 0.43 deleterious_low_confidence(0.05) benign(0.443) TCGA-AC-A5XU-01 X 12632959 12632959 G A FRMPD4 Silent p.P127P 0.28 TCGA-AC-A5XU-01 X 152710883 152710883 G A TREX2 Silent p.S2S 0.11 TCGA-AC-A5XU-01 X 153296805 153296805 C T MECP2 Silent p.T170T 0.23 TCGA-AC-A5XU-01 X 21444627 21444627 G A CNKSR2 Missense_Mutation p.C26Y 0.05 deleterious(0) possibly_damaging(0.841) TCGA-AC-A5XU-01 X 37431031 37431031 C T LANCL3 5'UTR 0.21 TCGA-AC-A5XU-01 X 70350046 70350047 - ATA MED12 In_Frame_Ins p.I1344dup 0.35 TCGA-AC-A62V-01 10 116038537 116038537 G A VWA2 Missense_Mutation p.A254T 0.06 tolerated(0.23) benign(0.008) TCGA-AC-A62V-01 10 27702773 27702773 G A PTCHD3 Missense_Mutation p.A136V 0.18 deleterious(0.01) benign(0.313) TCGA-AC-A62V-01 10 8111500 8111504 GGAGG - GATA3 Frame_Shift_Del p.R330Kfs*21 0.40 TCGA-AC-A62V-01 11 101762085 101762085 G T ANGPTL5 Silent p.T364T 0.20 TCGA-AC-A62V-01 11 35453849 35453850 AC - PAMR1 3'UTR 0.13 TCGA-AC-A62V-01 11 55371458 55371458 G T OR4C11 Missense_Mutation p.P131Q 0.29 deleterious(0.05) benign(0.128) TCGA-AC-A62V-01 11 60643026 60643026 C T ZP1 Missense_Mutation p.A605V 0.17 tolerated(1) benign(0) TCGA-AC-A62V-01 11 61725657 61725657 C T BEST1 Silent p.L192L 0.31 TCGA-AC-A62V-01 11 71511510 71511510 G A FAM86C1 3'UTR 0.27 TCGA-AC-A62V-01 11 76731423 76731423 A G ACER3 3'UTR 0.23 TCGA-AC-A62V-01 12 104336406 104336406 C A HSP90B1 Silent p.I492I 0.16 TCGA-AC-A62V-01 12 124498797 124498797 C T ZNF664 3'UTR 0.26 TCGA-AC-A62V-01 12 130015750 130015750 C T TMEM132D Silent p.R323R 0.28 TCGA-AC-A62V-01 12 14778763 14778763 A G GUCY2C Missense_Mutation p.V779A 0.29 deleterious(0) probably_damaging(0.999) TCGA-AC-A62V-01 12 57850417 57850417 G A INHBE Missense_Mutation p.C280Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-AC-A62V-01 13 114839279 114839279 G A RASA3 Missense_Mutation p.P30L 0.23 deleterious(0.01) benign(0.412) TCGA-AC-A62V-01 13 37006183 37006183 G A CCNA1 5'Flank 0.18 TCGA-AC-A62V-01 13 42439928 42439928 C T VWA8 Missense_Mutation p.A457T 0.18 tolerated(0.19) benign(0.033) TCGA-AC-A62V-01 13 53313881 53313881 C G LECT1 5'UTR 0.36 TCGA-AC-A62V-01 14 102906931 102906931 C T TECPR2 Silent p.L913L 0.32 TCGA-AC-A62V-01 14 106174141 106174141 G A IGHA1 Silent p.T216T 0.14 TCGA-AC-A62V-01 14 19563677 19563677 G A POTEG Intron 0.31 TCGA-AC-A62V-01 14 21678831 21678831 A G HNRNPC 3'UTR 0.18 TCGA-AC-A62V-01 14 56142603 56142603 T C KTN1 Silent p.N1274N 0.29 TCGA-AC-A62V-01 14 71485865 71485865 T A PCNX Missense_Mutation p.Y1046N 0.15 deleterious(0) probably_damaging(0.979) TCGA-AC-A62V-01 14 99640678 99640678 G A BCL11B Missense_Mutation p.A832V 0.15 deleterious(0) benign(0.181) TCGA-AC-A62V-01 15 25620729 25620729 G A UBE3A Missense_Mutation p.P85S 0.27 tolerated(0.5) benign(0.007) TCGA-AC-A62V-01 15 75552816 75552816 G T GOLGA6C Missense_Mutation p.G63C 0.40 tolerated(1) benign(0) TCGA-AC-A62V-01 15 94910993 94910993 C T MCTP2 Silent p.S487S 0.58 TCGA-AC-A62V-01 16 2030685 2030685 T A NOXO1 Missense_Mutation p.R65S 0.13 tolerated(0.23) benign(0.11) TCGA-AC-A62V-01 16 20976702 20976702 C T DNAH3 Missense_Mutation p.G2835E 0.18 deleterious(0) probably_damaging(0.987) TCGA-AC-A62V-01 16 23767488 23767488 T C CHP2 Missense_Mutation p.L109P 0.11 deleterious(0.04) benign(0.005) TCGA-AC-A62V-01 16 2454138 2454138 T G ABCA17P RNA 0.13 TCGA-AC-A62V-01 16 4739253 4739253 T C MGRN1 3'UTR 0.43 TCGA-AC-A62V-01 16 48180220 48180220 G A ABCC12 Missense_Mutation p.A39V 0.26 deleterious(0.04) benign(0.12) TCGA-AC-A62V-01 16 50332821 50332821 G A ADCY7 Missense_Mutation p.E319K 0.27 deleterious(0.05) probably_damaging(1) TCGA-AC-A62V-01 16 67270587 67270587 C T FHOD1 Missense_Mutation p.A398T 0.39 tolerated(0.42) benign(0.002) TCGA-AC-A62V-01 16 69166031 69166031 C T CHTF8 Intron 0.57 TCGA-AC-A62V-01 17 37101231 37101231 G T FBXO47 Missense_Mutation p.P259T 0.28 deleterious(0) probably_damaging(0.998) TCGA-AC-A62V-01 17 57776261 57776261 G A PTRH2 5'UTR 0.03 TCGA-AC-A62V-01 17 57886214 57886214 T A VMP1 Missense_Mutation p.F258I 0.02 tolerated(0.07) benign(0.078) TCGA-AC-A62V-01 17 61667432 61667432 C G DCAF7 3'Flank 0.48 TCGA-AC-A62V-01 17 61667599 61667599 C G DCAF7 3'Flank 0.45 TCGA-AC-A62V-01 17 61667823 61667823 C G DCAF7 3'Flank 0.47 TCGA-AC-A62V-01 17 64128846 64128846 G C CEP112 Nonsense_Mutation p.S169* 0.07 TCGA-AC-A62V-01 17 65163724 65163724 G C HELZ Missense_Mutation p.P540R 0.09 tolerated(0.09) benign(0.013) TCGA-AC-A62V-01 17 72758301 72758301 C G SLC9A3R1 Missense_Mutation p.R198G 0.24 deleterious(0) probably_damaging(0.999) TCGA-AC-A62V-01 17 76089174 76089174 C G TNRC6C Missense_Mutation p.I1374M 0.17 tolerated(0.21) possibly_damaging(0.459) TCGA-AC-A62V-01 17 76089706 76089706 C G TNRC6C Missense_Mutation p.H1387D 0.13 deleterious(0.03) benign(0.287) TCGA-AC-A62V-01 17 77709137 77709137 G A ENPP7 Missense_Mutation p.R232H 0.31 tolerated(0.13) benign(0.009) TCGA-AC-A62V-01 17 78444747 78444747 C T NPTX1 Missense_Mutation p.G389R 0.21 tolerated(0.2) possibly_damaging(0.781) TCGA-AC-A62V-01 19 41597763 41597763 C T CYP2A13 Missense_Mutation p.P261S 0.34 deleterious(0.04) possibly_damaging(0.453) TCGA-AC-A62V-01 19 49793743 49793743 G T SLC6A16 Intron 0.44 TCGA-AC-A62V-01 19 49793827 49793827 T A SLC6A16 Intron 0.29 TCGA-AC-A62V-01 19 57133202 57133202 G A ZNF71 Missense_Mutation p.E183K 0.32 deleterious(0) probably_damaging(0.99) TCGA-AC-A62V-01 1 160340735 160340735 G A NHLH1 Missense_Mutation p.A72T 0.34 tolerated(0.06) possibly_damaging(0.499) TCGA-AC-A62V-01 1 183387421 183387421 G A NMNAT2 5'UTR 0.29 TCGA-AC-A62V-01 1 237947030 237947030 T C RYR2 Silent p.S4006S 0.15 TCGA-AC-A62V-01 1 240497506 240497506 G T FMN2 Missense_Mutation p.R1581I 0.36 possibly_damaging(0.722) TCGA-AC-A62V-01 1 53072464 53072464 G A GPX7 Missense_Mutation p.A83T 0.17 deleterious(0) probably_damaging(0.984) TCGA-AC-A62V-01 1 53543446 53543446 C T PODN Silent p.D324D 0.29 TCGA-AC-A62V-01 20 33581028 33581028 G C MYH7B Missense_Mutation p.K811N 0.04 probably_damaging(0.971) TCGA-AC-A62V-01 20 33582066 33582066 G A MYH7B Silent p.E896E 0.05 TCGA-AC-A62V-01 20 33582161 33582161 G C MYH7B Missense_Mutation p.S928T 0.04 benign(0.023) TCGA-AC-A62V-01 20 33719517 33719517 C T EDEM2 Missense_Mutation p.D258N 0.04 deleterious(0) probably_damaging(1) TCGA-AC-A62V-01 20 34092676 34092676 G C CEP250 Missense_Mutation p.R2160T 0.07 possibly_damaging(0.839) TCGA-AC-A62V-01 20 3778343 3778343 G A CDC25B Missense_Mutation p.R92Q 0.49 deleterious(0.04) benign(0.012) TCGA-AC-A62V-01 20 44505469 44505472 TATT - ZSWIM3 Frame_Shift_Del p.F92Sfs*4 0.22 TCGA-AC-A62V-01 20 47582416 47582416 G A ARFGEF2 Silent p.A305A 0.06 TCGA-AC-A62V-01 21 46078114 46078114 C T KRTAP12-3 Missense_Mutation p.S73L 0.23 deleterious(0) probably_damaging(0.968) TCGA-AC-A62V-01 22 50717366 50717366 G A PLXNB2 Silent p.S1488S 0.20 TCGA-AC-A62V-01 2 119599817 119599817 G A EN1 3'UTR 0.30 TCGA-AC-A62V-01 2 127805987 127805987 T G BIN1 3'UTR 0.43 TCGA-AC-A62V-01 2 135095926 135095926 G A MGAT5 Missense_Mutation p.A248T 0.36 tolerated(0.4) benign(0.002) TCGA-AC-A62V-01 2 202340461 202340461 C T STRADB Missense_Mutation p.H182Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-AC-A62V-01 2 226447267 226447267 G A NYAP2 Silent p.A378A 0.45 TCGA-AC-A62V-01 2 241631680 241631680 G C AQP12A Missense_Mutation p.A105P 0.30 deleterious(0) probably_damaging(0.994) TCGA-AC-A62V-01 2 29295225 29295225 C A C2orf71 Missense_Mutation p.G635W 0.10 tolerated(0.08) benign(0.017) TCGA-AC-A62V-01 2 97530074 97530074 C A SEMA4C Missense_Mutation p.E336D 0.22 tolerated(1) benign(0.003) TCGA-AC-A62V-01 3 111898530 111898530 C G SLC9C1 Missense_Mutation p.G923R 0.11 tolerated(0.19) possibly_damaging(0.642) TCGA-AC-A62V-01 3 129225301 129225301 G T IFT122 Missense_Mutation p.Q951H 0.19 tolerated(0.06) probably_damaging(0.951) TCGA-AC-A62V-01 3 16646816 16646816 C T DAZL 5'Flank 0.41 TCGA-AC-A62V-01 3 169693432 169693432 G A SEC62 Missense_Mutation p.A25T 0.23 deleterious(0) probably_damaging(0.991) TCGA-AC-A62V-01 3 169802867 169802869 AAC - GPR160 3'UTR 0.15 TCGA-AC-A62V-01 3 37555290 37555290 G A ITGA9 Missense_Mutation p.D312N 0.20 deleterious(0) probably_damaging(1) TCGA-AC-A62V-01 3 46539601 46539601 C T RTP3 Missense_Mutation p.R17W 0.40 deleterious(0.01) possibly_damaging(0.586) TCGA-AC-A62V-01 4 10442498 10442499 - C ZNF518B 3'UTR 0.65 TCGA-AC-A62V-01 4 106163174 106163174 C T TET2 Intron 0.39 TCGA-AC-A62V-01 4 3189601 3189601 A C HTT Missense_Mutation p.E1738A 0.22 benign(0.375) TCGA-AC-A62V-01 5 65476268 65476271 GTTA - SREK1 3'UTR 0.15 TCGA-AC-A62V-01 6 132892237 132892237 C A TAAR6 Silent p.T259T 0.27 TCGA-AC-A62V-01 6 26509263 26509263 G C BTN1A1 Missense_Mutation p.R481T 0.46 tolerated(0.11) benign(0.04) TCGA-AC-A62V-01 6 84566976 84566976 A T RIPPLY2 Missense_Mutation p.K85N 0.28 deleterious(0) probably_damaging(0.988) TCGA-AC-A62V-01 7 102956277 102956293 TATCAAATGCCTTTTTA - DNAJC2 Frame_Shift_Del p.N518Kfs*22 0.18 TCGA-AC-A62V-01 7 103767186 103767186 C G ORC5 3'UTR 0.48 TCGA-AC-A62V-01 7 151269777 151269777 C T PRKAG2 Missense_Mutation p.E342K 0.43 deleterious(0.01) possibly_damaging(0.77) TCGA-AC-A62V-01 7 2259013 2259013 C T MAD1L1 Missense_Mutation p.E184K 0.17 deleterious(0.03) possibly_damaging(0.515) TCGA-AC-A62V-01 7 23724223 23724223 C T FAM221A Silent p.S57S 0.24 TCGA-AC-A62V-01 7 25175728 25175728 T G C7orf31 Missense_Mutation p.N546H 0.22 tolerated(0.57) probably_damaging(0.991) TCGA-AC-A62V-01 7 27194746 27194746 G A HOXA7 Missense_Mutation p.R159C 0.10 deleterious(0) probably_damaging(0.999) TCGA-AC-A62V-01 7 42972034 42972034 C T MRPL32 Missense_Mutation p.R17W 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.614) TCGA-AC-A62V-01 7 47440049 47440049 C T TNS3 Missense_Mutation p.R287H 0.29 deleterious(0) probably_damaging(0.997) TCGA-AC-A62V-01 7 47874791 47874791 C T PKD1L1 Silent p.L1998L 0.16 TCGA-AC-A62V-01 8 107749773 107749773 G A OXR1 Missense_Mutation p.R662H 0.21 deleterious(0.01) benign(0.176) TCGA-AC-A62V-01 8 16043724 16043724 G A MSR1 Intron 0.12 TCGA-AC-A62V-01 8 92971968 92971968 C A RUNX1T1 3'Flank 0.20 TCGA-AC-A62V-01 9 104356696 104356696 C T PPP3R2 Missense_Mutation p.V173I 0.37 tolerated_low_confidence(0.19) benign(0.043) TCGA-AC-A62V-01 9 134464319 134464319 G A RAPGEF1 Silent p.R806R 0.73 TCGA-AC-A62V-01 9 135073925 135073925 C T NTNG2 Silent p.G262G 0.29 TCGA-AC-A62V-01 9 742314 742314 C T KANK1 Missense_Mutation p.T1269M 0.52 deleterious(0) probably_damaging(0.995) TCGA-AC-A62V-01 9 86585723 86585723 C A HNRNPK Missense_Mutation p.A374S 0.36 tolerated(0.77) benign(0.029) TCGA-AC-A62V-01 9 88960586 88960586 T C ZCCHC6 Missense_Mutation p.K273E 0.32 tolerated(0.15) possibly_damaging(0.839) TCGA-AC-A62V-01 X 14027133 14027133 C T GEMIN8 Missense_Mutation p.A210T 0.35 tolerated(0.17) benign(0.093) TCGA-AC-A62X-01 10 1246063 1246063 G A ADARB2 Silent p.G569G 0.30 TCGA-AC-A62X-01 10 49998825 49998825 G A WDFY4 Missense_Mutation p.G1374R 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A62X-01 10 73437397 73437397 G A CDH23 Missense_Mutation p.V159M 0.18 tolerated(0.15) benign(0.071) TCGA-AC-A62X-01 10 74451957 74451958 - GGC MCU In_Frame_Ins p.G22dup 0.50 TCGA-AC-A62X-01 11 119043620 119043620 C T NLRX1 Missense_Mutation p.R51C 0.24 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-AC-A62X-01 11 12247894 12247894 G T MICAL2 Missense_Mutation p.R622L 0.18 deleterious(0) possibly_damaging(0.695) TCGA-AC-A62X-01 11 24759771 24759771 G T LUZP2 Nonsense_Mutation p.E86* 0.31 TCGA-AC-A62X-01 11 48267470 48267470 C T OR4X2 Missense_Mutation p.A272V 0.36 deleterious(0) benign(0.005) TCGA-AC-A62X-01 11 5153189 5153189 G T OR52A5 Silent p.V228V 0.18 TCGA-AC-A62X-01 12 113425098 113425098 G A OAS2 Missense_Mutation p.A145T 0.17 tolerated(0.06) possibly_damaging(0.738) TCGA-AC-A62X-01 12 129180413 129180413 G A TMEM132C Missense_Mutation p.R565Q 0.40 tolerated(0.07) benign(0.052) TCGA-AC-A62X-01 14 100118715 100118715 C T HHIPL1 Missense_Mutation p.A137V 0.47 tolerated(0.13) possibly_damaging(0.612) TCGA-AC-A62X-01 14 23012121 23012121 G A TRAJ3 5'Flank 0.27 TCGA-AC-A62X-01 15 41797455 41797455 C T LTK Missense_Mutation p.D626N 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AC-A62X-01 16 11782284 11782284 A C TXNDC11 Missense_Mutation p.F640V 0.15 deleterious(0) benign(0.233) TCGA-AC-A62X-01 16 1511617 1511617 G C CLCN7 Missense_Mutation p.S91C 0.27 deleterious(0) probably_damaging(0.99) TCGA-AC-A62X-01 16 18433239 18433239 G A NPIPA8 5'Flank 0.09 TCGA-AC-A62X-01 16 24227083 24227083 C T PRKCB 3'UTR 0.26 TCGA-AC-A62X-01 16 30939090 30939090 C T FBXL19 Missense_Mutation p.R165C 0.19 deleterious(0.04) probably_damaging(0.919) TCGA-AC-A62X-01 16 51173053 51173053 C T SALL1 Missense_Mutation p.R1027K 0.48 tolerated(0.4) probably_damaging(0.988) TCGA-AC-A62X-01 16 55794533 55794533 C T CES1P1 RNA 0.35 TCGA-AC-A62X-01 16 71488041 71488041 A G ZNF23 5'UTR 0.36 TCGA-AC-A62X-01 17 27296881 27296881 G T SEZ6 Missense_Mutation p.F316L 0.79 tolerated(1) benign(0.007) TCGA-AC-A62X-01 17 53798216 53798216 G A TMEM100 Silent p.T72T 0.88 TCGA-AC-A62X-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.73 deleterious(0) probably_damaging(1) TCGA-AC-A62X-01 18 24510658 24510658 T A CHST9 Intron 0.12 TCGA-AC-A62X-01 18 34647216 34647216 C T KIAA1328 Missense_Mutation p.R314C 0.23 tolerated(0.14) benign(0.001) TCGA-AC-A62X-01 19 30165101 30165101 C T PLEKHF1 Missense_Mutation p.R119C 0.24 deleterious(0) probably_damaging(0.992) TCGA-AC-A62X-01 19 38876632 38876632 C A GGN Missense_Mutation p.G424C 0.72 deleterious_low_confidence(0) unknown(0) TCGA-AC-A62X-01 19 48058876 48058876 C T ZNF541 Missense_Mutation p.G80R 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A62X-01 19 49538955 49538955 G T CGB1 Missense_Mutation p.T127N 0.21 tolerated(0.28) benign(0.226) TCGA-AC-A62X-01 19 5133978 5133978 C T KDM4B Missense_Mutation p.A664V 0.08 possibly_damaging(0.75) TCGA-AC-A62X-01 19 54823368 54823368 G A LILRA5 Missense_Mutation p.R59W 0.26 tolerated(1) benign(0.01) TCGA-AC-A62X-01 1 150783953 150783953 C T ARNT 3'UTR 0.15 TCGA-AC-A62X-01 1 154031059 154031059 C G NUP210L Missense_Mutation p.E987D 0.11 tolerated(0.96) probably_damaging(0.976) TCGA-AC-A62X-01 1 166959030 166959030 C T MAEL Silent p.A63A 0.15 TCGA-AC-A62X-01 1 16901044 16901044 T G NBPF1 Missense_Mutation p.D779A 0.12 tolerated(0.07) probably_damaging(0.96) TCGA-AC-A62X-01 1 181689359 181689359 G A CACNA1E Missense_Mutation p.R590Q 0.28 deleterious(0.01) possibly_damaging(0.553) TCGA-AC-A62X-01 1 204199663 204199663 C A PLEKHA6 Missense_Mutation p.V821L 0.47 tolerated(0.07) possibly_damaging(0.586) TCGA-AC-A62X-01 1 205498708 205498708 C T CDK18 Intron 0.17 TCGA-AC-A62X-01 1 46093406 46093406 A C GPBP1L1 3'UTR 0.26 TCGA-AC-A62X-01 1 66833414 66833424 GTGTTGGAAAA - PDE4B Frame_Shift_Del p.V474Sfs*16 0.14 TCGA-AC-A62X-01 20 2413157 2413157 G A TGM6 Silent p.Q663Q 0.45 TCGA-AC-A62X-01 20 3846631 3846631 C T MAVS Missense_Mutation p.A487V 0.27 tolerated(0.18) benign(0.002) TCGA-AC-A62X-01 20 42697624 42697624 C G TOX2 3'UTR 0.31 TCGA-AC-A62X-01 21 36161903 36161903 A G RUNX1 3'UTR 0.27 TCGA-AC-A62X-01 21 47983837 47983837 C T DIP2A Silent p.L1386L 0.39 TCGA-AC-A62X-01 22 26897940 26897940 C T TFIP11 Missense_Mutation p.V243M 0.27 deleterious(0.03) benign(0.033) TCGA-AC-A62X-01 22 45958895 45958895 G A FBLN1 Intron 0.35 TCGA-AC-A62X-01 2 111559229 111559229 G A ACOXL Missense_Mutation p.G183D 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A62X-01 2 128622763 128622763 C T AMMECR1L Missense_Mutation p.V280M 0.18 tolerated(0.62) benign(0.098) TCGA-AC-A62X-01 3 138665358 138665358 C A FOXL2 Missense_Mutation p.E69D 0.11 tolerated(0.18) benign(0.033) TCGA-AC-A62X-01 3 153943664 153943664 C T ARHGEF26 Missense_Mutation p.S652F 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-AC-A62X-01 3 182947467 182947467 C T MCF2L2 Missense_Mutation p.E678K 0.12 deleterious(0.02) possibly_damaging(0.59) TCGA-AC-A62X-01 3 188596552 188596552 A T LPP 3'UTR 0.26 TCGA-AC-A62X-01 3 3099402 3099402 A G CNTN4 3'UTR 0.08 TCGA-AC-A62X-01 3 52440864 52440865 - A BAP1 Frame_Shift_Ins p.I214Yfs*29 0.50 TCGA-AC-A62X-01 3 57143634 57143634 C T IL17RD Missense_Mutation p.V161I 0.78 tolerated(0.07) possibly_damaging(0.797) TCGA-AC-A62X-01 4 16504699 16504699 C T LDB2 Intron 0.80 TCGA-AC-A62X-01 4 169611772 169611772 G A PALLD Missense_Mutation p.V452M 0.33 deleterious(0) possibly_damaging(0.767) TCGA-AC-A62X-01 4 183720880 183720880 C A TENM3 Silent p.V2492V 0.29 TCGA-AC-A62X-01 4 25750062 25750062 C T SEL1L3 Silent p.P1128P 0.54 TCGA-AC-A62X-01 4 44176200 44176200 C G KCTD8 3'UTR 0.24 TCGA-AC-A62X-01 4 8034384 8034384 C T ABLIM2 Intron 0.61 TCGA-AC-A62X-01 5 160720905 160720905 A C GABRB2 3'UTR 0.56 TCGA-AC-A62X-01 5 174156477 174156477 C T MSX2 Missense_Mutation p.A232V 0.47 deleterious(0.04) benign(0.386) TCGA-AC-A62X-01 5 180166345 180166345 C T OR2Y1 Silent p.G238G 0.31 TCGA-AC-A62X-01 5 52227951 52227951 G C ITGA1 Missense_Mutation p.G949A 0.34 tolerated(0.08) possibly_damaging(0.861) TCGA-AC-A62X-01 6 168363149 168363149 G C MLLT4 Missense_Mutation p.E1615Q 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-AC-A62X-01 6 26032052 26032052 G T HIST1H3B Missense_Mutation p.F79L 0.26 deleterious_low_confidence(0.02) benign(0.02) TCGA-AC-A62X-01 6 30121293 30121293 G T TRIM10 3'UTR 0.20 TCGA-AC-A62X-01 6 32020477 32020477 C T TNXB Missense_Mutation p.V3027M 0.20 probably_damaging(0.938) TCGA-AC-A62X-01 6 35442832 35442832 C T TEAD3 Missense_Mutation p.V433I 0.14 tolerated(0.2) benign(0.034) TCGA-AC-A62X-01 6 43305038 43305038 A C ZNF318 Missense_Mutation p.L2233R 0.09 possibly_damaging(0.905) TCGA-AC-A62X-01 6 72011241 72011241 A G OGFRL1 Missense_Mutation p.Y282C 0.13 deleterious(0) probably_damaging(1) TCGA-AC-A62X-01 6 99848141 99848141 C T PNISR 3'UTR 0.10 TCGA-AC-A62X-01 7 100284299 100284299 C T GIGYF1 Missense_Mutation p.G223S 0.22 tolerated(0.29) unknown(0) TCGA-AC-A62X-01 7 139281495 139281495 G A HIPK2 Silent p.D895D 0.07 TCGA-AC-A62X-01 7 156432494 156432494 G A C7orf13 3'UTR 0.19 TCGA-AC-A62X-01 8 143396434 143396434 T C TSNARE1 Missense_Mutation p.E335G 0.27 deleterious(0.02) benign(0.298) TCGA-AC-A62X-01 8 145626185 145626185 T C CPSF1 Missense_Mutation p.Y189C 0.46 deleterious(0) probably_damaging(1) TCGA-AC-A62X-01 9 15472686 15472686 A G PSIP1 Silent p.H307H 0.10 TCGA-AC-A62X-01 9 21335213 21335213 G A KLHL9 5'UTR 0.19 TCGA-AC-A62X-01 9 6329975 6329975 C A TPD52L3 3'UTR 0.06 TCGA-AC-A62X-01 X 114141231 114141231 C T HTR2C Silent p.N210N 0.39 TCGA-AC-A62X-01 X 127185519 127185519 C T ACTRT1 Missense_Mutation p.A223T 0.20 deleterious(0.04) probably_damaging(0.948) TCGA-AC-A62X-01 X 134033520 134033520 G T MOSPD1 5'UTR 0.15 TCGA-AC-A62X-01 X 14748861 14748861 C A GLRA2 3'UTR 0.15 TCGA-AC-A62X-01 X 31279129 31279129 C T DMD Missense_Mutation p.E3077K 0.41 benign(0.182) TCGA-AC-A62X-01 X 49641832 49641833 - A USP27X 5'Flank 0.33 TCGA-AC-A62X-01 X 77386205 77386205 A T TAF9B 3'UTR 0.08 TCGA-AC-A62Y-01 10 102762114 102762114 G C LZTS2 5'UTR 0.25 TCGA-AC-A62Y-01 10 28412995 28412995 C A MPP7 Nonsense_Mutation p.E194* 0.38 TCGA-AC-A62Y-01 10 89692864 89692865 - A PTEN Frame_Shift_Ins p.N117Kfs*9 0.36 TCGA-AC-A62Y-01 11 109296075 109296075 G A C11orf87 3'UTR 0.07 TCGA-AC-A62Y-01 11 113270051 113270051 G C ANKK1 Missense_Mutation p.V454L 0.10 tolerated(0.08) possibly_damaging(0.595) TCGA-AC-A62Y-01 11 1756511 1756513 TAG - IFITM10 In_Frame_Del p.Y228del 0.21 TCGA-AC-A62Y-01 11 3829539 3829539 C T PGAP2 5'Flank 0.55 TCGA-AC-A62Y-01 11 6245042 6245042 G A FAM160A2 Missense_Mutation p.S192L 0.33 deleterious(0) benign(0.124) TCGA-AC-A62Y-01 11 9161189 9161189 C T DENND5A 3'UTR 0.16 TCGA-AC-A62Y-01 12 108154313 108154313 G A PRDM4 5'UTR 0.21 TCGA-AC-A62Y-01 12 393895 393895 G A KDM5A 3'UTR 0.30 TCGA-AC-A62Y-01 13 110801369 110801369 G A COL4A1 3'UTR 0.25 TCGA-AC-A62Y-01 13 95055972 95055972 G A GPC6 3'UTR 0.29 TCGA-AC-A62Y-01 14 106054692 106054692 T C IGHA2 Missense_Mutation p.D14G 0.31 tolerated(0.46) benign(0) TCGA-AC-A62Y-01 14 20248532 20248532 A G OR4M1 Silent p.L17L 0.11 TCGA-AC-A62Y-01 14 23993874 23993874 C G ZFHX2 Missense_Mutation p.E1759D 0.48 benign(0.2) TCGA-AC-A62Y-01 14 36005540 36005540 C T INSM2 3'UTR 0.22 TCGA-AC-A62Y-01 14 75585575 75585575 G T NEK9 Silent p.G196G 0.20 TCGA-AC-A62Y-01 14 75745576 75745576 G A FOS 5'UTR 0.15 TCGA-AC-A62Y-01 16 15702369 15702369 C G KIAA0430 Missense_Mutation p.E1321Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A62Y-01 16 15818436 15818436 C G NDE1 3'UTR 0.13 TCGA-AC-A62Y-01 16 23083474 23083474 G A USP31 Missense_Mutation p.P794S 0.15 tolerated(0.22) probably_damaging(0.968) TCGA-AC-A62Y-01 16 30012782 30012782 G A INO80E Silent p.L148L 0.16 TCGA-AC-A62Y-01 16 89657546 89657546 G A CPNE7 Missense_Mutation p.V469M 0.44 deleterious(0.02) possibly_damaging(0.908) TCGA-AC-A62Y-01 17 16593988 16593988 G A CCDC144A Missense_Mutation p.D92N 0.19 tolerated_low_confidence(0.1) benign(0.029) TCGA-AC-A62Y-01 17 33325668 33325668 G A LIG3 Missense_Mutation p.D679N 0.23 deleterious(0) probably_damaging(0.998) TCGA-AC-A62Y-01 17 35562687 35562687 G T ACACA Missense_Mutation p.Q1350K 0.15 tolerated(0.29) benign(0.234) TCGA-AC-A62Y-01 17 37819130 37819130 A G STARD3 Missense_Mutation p.Q436R 0.26 deleterious(0.03) benign(0.019) TCGA-AC-A62Y-01 17 39925390 39925390 T A JUP Missense_Mutation p.M180L 0.31 tolerated(0.05) benign(0.012) TCGA-AC-A62Y-01 17 43923001 43923001 T C SPPL2C Silent p.D243D 0.16 TCGA-AC-A62Y-01 17 56281653 56281653 C G EPX Missense_Mutation p.R673G 0.30 deleterious(0) probably_damaging(0.988) TCGA-AC-A62Y-01 17 62232305 62232305 G C TEX2 Missense_Mutation p.L950V 0.41 deleterious(0) probably_damaging(0.914) TCGA-AC-A62Y-01 17 65722667 65722667 G A NOL11 Silent p.K252K 0.24 TCGA-AC-A62Y-01 18 29437586 29437586 C G TRAPPC8 Missense_Mutation p.W1035C 0.14 deleterious(0) probably_damaging(1) TCGA-AC-A62Y-01 19 12036032 12036032 T G ZNF763 Missense_Mutation p.C3G 0.11 deleterious_low_confidence(0) benign(0.402) TCGA-AC-A62Y-01 19 1784825 1784825 C T ATP8B3 Missense_Mutation p.R1218H 0.14 tolerated(0.57) benign(0.002) TCGA-AC-A62Y-01 19 19313938 19313938 C G NR2C2AP 5'UTR 0.23 TCGA-AC-A62Y-01 19 21719636 21719636 G C ZNF429 Missense_Mutation p.E261Q 0.30 deleterious(0.02) probably_damaging(0.952) TCGA-AC-A62Y-01 19 3544616 3544616 G A MFSD12 Intron 0.19 TCGA-AC-A62Y-01 19 38895664 38895664 G C FAM98C Missense_Mutation p.E156Q 0.30 deleterious(0) probably_damaging(1) TCGA-AC-A62Y-01 19 48025241 48025241 T A ZNF541 Missense_Mutation p.K1213M 0.20 deleterious(0) probably_damaging(0.999) TCGA-AC-A62Y-01 19 51920051 51920051 G A SIGLEC10 Missense_Mutation p.P192L 0.19 tolerated(0.16) benign(0.034) TCGA-AC-A62Y-01 19 55294960 55294960 G T KIR2DL1 Missense_Mutation p.E280D 0.24 deleterious(0.05) benign(0.178) TCGA-AC-A62Y-01 1 110086413 110086413 G A GPR61 Missense_Mutation p.E257K 0.16 deleterious(0.02) possibly_damaging(0.788) TCGA-AC-A62Y-01 1 153916630 153916630 C - DENND4B Frame_Shift_Del p.G74Afs*225 0.17 TCGA-AC-A62Y-01 1 153916698 153916698 T C DENND4B Silent p.A51A 0.12 TCGA-AC-A62Y-01 1 170115286 170115286 G A METTL11B Missense_Mutation p.R13H 0.23 tolerated_low_confidence(0.12) possibly_damaging(0.863) TCGA-AC-A62Y-01 1 62550250 62550250 T A INADL Missense_Mutation p.M1436K 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-AC-A62Y-01 1 78163138 78163138 G C USP33 Missense_Mutation p.S898C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AC-A62Y-01 1 899384 899384 G A KLHL17 Silent p.T480T 0.19 TCGA-AC-A62Y-01 20 30451741 30451741 G A DUSP15 Missense_Mutation p.R78C 0.19 deleterious(0) probably_damaging(1) TCGA-AC-A62Y-01 21 19698785 19698785 C T TMPRSS15 Missense_Mutation p.A629T 0.16 deleterious(0.04) probably_damaging(0.979) TCGA-AC-A62Y-01 21 38437924 38437924 T C PIGP Silent p.Q145Q 0.19 TCGA-AC-A62Y-01 22 41985728 41985728 G C PMM1 Missense_Mutation p.R28G 0.37 deleterious(0) probably_damaging(0.954) TCGA-AC-A62Y-01 2 100209831 100209831 C A AFF3 Missense_Mutation p.R789S 0.13 deleterious(0.01) benign(0.138) TCGA-AC-A62Y-01 2 15523383 15523383 G A NBAS Nonsense_Mutation p.Q1106* 0.08 TCGA-AC-A62Y-01 2 165578980 165578980 T C COBLL1 Silent p.K238K 0.22 TCGA-AC-A62Y-01 2 242179047 242179047 C T HDLBP Silent p.K860K 0.43 TCGA-AC-A62Y-01 3 11712738 11712738 T C VGLL4 Missense_Mutation p.H26R 0.16 deleterious_low_confidence(0.03) benign(0.001) TCGA-AC-A62Y-01 3 14487331 14487331 C T SLC6A6 Silent p.C112C 0.19 TCGA-AC-A62Y-01 3 172116653 172116653 G A FNDC3B 3'UTR 0.16 TCGA-AC-A62Y-01 3 48716506 48716506 G C NCKIPSD Missense_Mutation p.L561V 0.27 deleterious(0.02) benign(0.008) TCGA-AC-A62Y-01 3 53765165 53765165 G A CACNA1D Missense_Mutation p.D820N 0.28 tolerated(0.18) benign(0.003) TCGA-AC-A62Y-01 4 154547320 154547320 A G KIAA0922 Missense_Mutation p.D1356G 0.21 tolerated(0.23) benign(0.031) TCGA-AC-A62Y-01 4 170017808 170017808 C T SH3RF1 Silent p.Q843Q 0.29 TCGA-AC-A62Y-01 4 54967839 54967839 C G GSX2 Missense_Mutation p.S222C 0.41 deleterious(0) probably_damaging(0.998) TCGA-AC-A62Y-01 4 5827283 5827283 G A CRMP1 Missense_Mutation p.S636L 0.17 deleterious(0.05) probably_damaging(0.997) TCGA-AC-A62Y-01 5 126705643 126705643 C G MEGF10 Missense_Mutation p.P121A 0.35 deleterious(0) probably_damaging(0.998) TCGA-AC-A62Y-01 5 133915428 133915428 G A JADE2 3'UTR 0.50 TCGA-AC-A62Y-01 5 9066748 9066748 G C SEMA5A Missense_Mutation p.S695C 0.25 deleterious(0.03) possibly_damaging(0.519) TCGA-AC-A62Y-01 6 121769808 121769808 A G GJA1 3'UTR 0.15 TCGA-AC-A62Y-01 6 131216142 131216142 G A EPB41L2 Missense_Mutation p.R452C 0.14 deleterious(0) probably_damaging(0.996) TCGA-AC-A62Y-01 6 168434703 168434703 G T KIF25 Missense_Mutation p.E103D 0.20 deleterious(0) probably_damaging(0.997) TCGA-AC-A62Y-01 6 33644867 33644867 G A ITPR3 Splice_Site p.X1174_splice 0.09 TCGA-AC-A62Y-01 6 99849187 99849187 A C PNISR Silent p.S549S 0.13 TCGA-AC-A62Y-01 7 100701312 100701312 C T MUC17 Missense_Mutation p.T4490M 0.31 unknown(0) TCGA-AC-A62Y-01 7 104742496 104742496 T C KMT2E Missense_Mutation p.I684T 0.22 tolerated_low_confidence(0.07) benign(0.032) TCGA-AC-A62Y-01 7 129474754 129474754 C T UBE2H 3'UTR 0.09 TCGA-AC-A62Y-01 7 27132876 27132876 G - HOXA1 3'UTR 0.21 TCGA-AC-A62Y-01 7 38424192 38424192 A G AMPH 3'UTR 0.27 TCGA-AC-A62Y-01 8 17612530 17612530 G A MTUS1 Nonsense_Mutation p.Q263* 0.17 TCGA-AC-A62Y-01 8 48811108 48811108 T A PRKDC Missense_Mutation p.D1129V 0.17 benign(0.192) TCGA-AC-A62Y-01 8 56436523 56436523 G A XKR4 Missense_Mutation p.A564T 0.16 tolerated(0.22) benign(0.005) TCGA-AC-A62Y-01 8 70584903 70584903 G A SLCO5A1 3'UTR 0.20 TCGA-AC-A62Y-01 8 70594539 70594539 G T SLCO5A1 Missense_Mutation p.S554R 0.15 deleterious(0.02) possibly_damaging(0.808) TCGA-AC-A62Y-01 8 70744582 70744582 G A SLCO5A1 Silent p.S109S 0.47 TCGA-AC-A62Y-01 9 107380401 107380402 - A OR13C9 Frame_Shift_Ins p.V29Cfs*93 0.25 TCGA-AC-A62Y-01 9 96439907 96439907 G C PHF2 Missense_Mutation p.Q1080H 0.49 deleterious(0) benign(0.216) TCGA-AC-A62Y-01 X 147744010 147744010 G A AFF2 Silent p.V254V 0.16 TCGA-AC-A62Y-01 X 21874663 21874663 G C YY2 Missense_Mutation p.E21Q 0.24 tolerated(0.07) possibly_damaging(0.723) TCGA-AC-A62Y-01 X 3261811 3261811 G A MXRA5 Nonsense_Mutation p.R22* 0.16 TCGA-AC-A62Y-01 X 73072487 73072487 G A XIST RNA 0.31 TCGA-AC-A62Y-01 X 76812972 76812972 C T ATRX Missense_Mutation p.D2217N 0.13 benign(0.336) TCGA-AC-A62Y-01 X 78616565 78616565 G T ITM2A 3'UTR 0.31 TCGA-AC-A6IV-01 10 8115984 8115985 TA - GATA3 Frame_Shift_Del p.*445E 0.11 TCGA-AC-A6IV-01 11 123847864 123847864 G A OR10S1 Missense_Mutation p.R179C 0.18 deleterious(0.05) benign(0.015) TCGA-AC-A6IV-01 11 61404707 61404707 G A RPLP0P2 RNA 0.19 TCGA-AC-A6IV-01 11 65812932 65812932 A T GAL3ST3 5'UTR 0.17 TCGA-AC-A6IV-01 11 72300987 72300987 C T PDE2A Silent p.L265L 0.15 TCGA-AC-A6IV-01 11 74421996 74421996 G T CHRDL2 Silent p.S110S 0.24 TCGA-AC-A6IV-01 11 85375510 85375510 G A CREBZF Missense_Mutation p.S137L 0.29 deleterious_low_confidence(0.02) probably_damaging(0.945) TCGA-AC-A6IV-01 11 86662142 86662142 T C FZD4 3'UTR 0.15 TCGA-AC-A6IV-01 12 57556208 57556208 G A LRP1 Missense_Mutation p.G771S 0.12 benign(0.18) TCGA-AC-A6IV-01 12 936396 936396 T A WNK1 Missense_Mutation p.L374Q 0.19 deleterious(0) unknown(0) TCGA-AC-A6IV-01 12 95911801 95911801 T A USP44 3'UTR 0.08 TCGA-AC-A6IV-01 14 106691842 106691842 C T IGHV3-21 Missense_Mutation p.G61E 0.12 tolerated_low_confidence(0.07) possibly_damaging(0.648) TCGA-AC-A6IV-01 16 68835629 68835629 C T CDH1 Nonsense_Mutation p.R74* 0.24 TCGA-AC-A6IV-01 19 54662133 54662133 C T LENG1 Missense_Mutation p.E67K 0.12 tolerated(0.28) benign(0.009) TCGA-AC-A6IV-01 1 22419253 22419253 A G CDC42 3'UTR 0.25 TCGA-AC-A6IV-01 1 238051772 238051772 G T ZP4 Missense_Mutation p.P147T 0.22 tolerated(0.3) benign(0.196) TCGA-AC-A6IV-01 2 116520153 116520153 T C DPP10 Silent p.Y364Y 0.17 TCGA-AC-A6IV-01 2 209108284 209108284 T C IDH1 Missense_Mutation p.I189V 0.14 deleterious_low_confidence(0.02) benign(0.227) TCGA-AC-A6IV-01 2 220419306 220419306 G A OBSL1 Missense_Mutation p.S1589L 0.08 tolerated(0.05) benign(0.018) TCGA-AC-A6IV-01 2 61715722 61715722 C T XPO1 Splice_Site p.X736_splice 0.23 TCGA-AC-A6IV-01 3 51864501 51864501 G A IQCF3 Missense_Mutation p.R50H 0.17 deleterious(0) possibly_damaging(0.89) TCGA-AC-A6IV-01 4 122722579 122722579 C T EXOSC9 5'UTR 0.13 TCGA-AC-A6IV-01 5 140209499 140209499 C T PCDHA6 Missense_Mutation p.S608L 0.24 tolerated_low_confidence(0.05) benign(0.411) TCGA-AC-A6IV-01 6 130762099 130762099 C A TMEM200A Missense_Mutation p.Q178K 0.16 tolerated(0.31) benign(0.078) TCGA-AC-A6IV-01 7 141883128 141883128 C T RP11-1220K2.2 Silent p.N1293N 0.07 TCGA-AC-A6IV-01 9 116959 116959 C T FOXD4 Silent p.G387G 0.12 TCGA-AC-A6IV-01 9 8484233 8484233 G A PTPRD Missense_Mutation p.T1100M 0.19 deleterious(0.02) possibly_damaging(0.776) TCGA-AC-A6IV-01 X 152853645 152853645 G A FAM58A 3'UTR 0.11 TCGA-AC-A6IW-01 10 123842552 123842552 G A TACC2 Silent p.P179P 0.41 TCGA-AC-A6IW-01 10 134906659 134906659 C A GPR123 Intron 0.12 TCGA-AC-A6IW-01 10 21147230 21147230 G A NEBL Missense_Mutation p.S281L 0.12 deleterious(0.01) benign(0.387) TCGA-AC-A6IW-01 10 23295818 23295818 T A ARMC3 Missense_Mutation p.N579K 0.48 tolerated(1) benign(0.008) TCGA-AC-A6IW-01 10 48429430 48429430 C T GDF10 Silent p.P152P 0.43 TCGA-AC-A6IW-01 10 88768343 88768343 G A RP11-96C23.10 3'Flank 0.11 TCGA-AC-A6IW-01 11 121174094 121174094 G C SC5D Missense_Mutation p.V4L 0.23 deleterious(0.04) benign(0.049) TCGA-AC-A6IW-01 11 27679158 27679158 T G BDNF 3'UTR 0.12 TCGA-AC-A6IW-01 11 2924600 2924600 G T SLC22A18 Missense_Mutation p.D9Y 0.11 deleterious(0.03) benign(0.428) TCGA-AC-A6IW-01 11 33001555 33001555 G A QSER1 3'UTR 0.25 TCGA-AC-A6IW-01 11 34167684 34167684 T C NAT10 Missense_Mutation p.L1008S 0.09 tolerated(0.73) benign(0.001) TCGA-AC-A6IW-01 11 34500511 34500511 C A ELF5 3'UTR 0.14 TCGA-AC-A6IW-01 11 4566923 4566923 G T OR52M1 Missense_Mutation p.R168L 0.22 deleterious(0) possibly_damaging(0.722) TCGA-AC-A6IW-01 11 61170644 61170644 G C CPSF7 3'UTR 0.13 TCGA-AC-A6IW-01 11 62295946 62295946 C G AHNAK Missense_Mutation p.E1981D 0.10 benign(0.388) TCGA-AC-A6IW-01 11 62296604 62296604 C T AHNAK Missense_Mutation p.G1762E 0.16 probably_damaging(0.969) TCGA-AC-A6IW-01 11 62298991 62298991 C G AHNAK Missense_Mutation p.M966I 0.11 benign(0.01) TCGA-AC-A6IW-01 11 63067070 63067070 C T SLC22A10 Missense_Mutation p.R347C 0.15 tolerated(0.14) benign(0.177) TCGA-AC-A6IW-01 11 63997761 63997761 G C DNAJC4 5'UTR 0.65 TCGA-AC-A6IW-01 11 67191716 67191716 G C CARNS1 Missense_Mutation p.D833H 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A6IW-01 11 82643386 82643386 G T C11orf82 Missense_Mutation p.D336Y 0.17 deleterious(0.01) possibly_damaging(0.59) TCGA-AC-A6IW-01 11 85445679 85445679 G C SYTL2 Missense_Mutation p.I230M 0.16 tolerated(0.05) benign(0.418) TCGA-AC-A6IW-01 12 105151459 105151459 G A CHST11 Missense_Mutation p.E313K 0.16 tolerated(0.26) benign(0.026) TCGA-AC-A6IW-01 12 110939857 110939857 C G VPS29 5'UTR 0.43 TCGA-AC-A6IW-01 12 114395725 114395725 C G RBM19 Silent p.V234V 0.11 TCGA-AC-A6IW-01 12 119592094 119592094 C A SRRM4 Missense_Mutation p.R480S 0.12 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-AC-A6IW-01 12 120933903 120933903 C G DYNLL1 Intron 0.50 TCGA-AC-A6IW-01 12 5019183 5019183 C A KCNA1 5'UTR 0.14 TCGA-AC-A6IW-01 12 52448522 52448522 C G NR4A1 Missense_Mutation p.S150W 0.17 deleterious(0) probably_damaging(0.994) TCGA-AC-A6IW-01 12 55714765 55714765 C T OR6C1 Silent p.L128L 0.07 TCGA-AC-A6IW-01 12 5604143 5604143 G A NTF3 Missense_Mutation p.G268R 0.11 tolerated(0.7) probably_damaging(0.998) TCGA-AC-A6IW-01 12 70049365 70049365 G A BEST3 Silent p.P443P 0.12 TCGA-AC-A6IW-01 12 7016674 7016674 C T LRRC23 Intron 0.11 TCGA-AC-A6IW-01 12 74933043 74933043 A C ATXN7L3B 3'UTR 0.10 TCGA-AC-A6IW-01 12 88900898 88900898 G A KITLG Silent p.P207P 0.09 TCGA-AC-A6IW-01 13 100915005 100915005 C G PCCA Missense_Mutation p.Q247E 0.35 tolerated(0.31) benign(0.009) TCGA-AC-A6IW-01 13 46553978 46553978 C G ZC3H13 Missense_Mutation p.E628Q 0.09 probably_damaging(0.993) TCGA-AC-A6IW-01 13 58300291 58300291 G C PCDH17 3'UTR 0.16 TCGA-AC-A6IW-01 14 101348385 101348385 T G RTL1 Missense_Mutation p.E914A 0.17 deleterious(0) probably_damaging(0.996) TCGA-AC-A6IW-01 14 45473314 45473314 C A FAM179B Missense_Mutation p.Q797K 0.19 tolerated(0.11) benign(0.087) TCGA-AC-A6IW-01 14 51411156 51411156 G C PYGL 5'UTR 0.36 TCGA-AC-A6IW-01 14 60976617 60976617 G C SIX6 Silent p.L167L 0.35 TCGA-AC-A6IW-01 14 72054620 72054620 A C SIPA1L1 Silent p.R11R 0.15 TCGA-AC-A6IW-01 15 22743433 22743433 G A GOLGA6L1 Silent p.E606E 0.10 TCGA-AC-A6IW-01 15 49033830 49033830 G C CEP152 Missense_Mutation p.S1354C 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-AC-A6IW-01 15 72063487 72063487 C T THSD4 Missense_Mutation p.P952S 0.08 tolerated(0.33) benign(0.102) TCGA-AC-A6IW-01 15 82335173 82335173 C A MEX3B 3'UTR 0.09 TCGA-AC-A6IW-01 16 10624473 10624473 C T EMP2 3'UTR 0.17 TCGA-AC-A6IW-01 16 15680931 15680931 C T C16orf45 3'UTR 0.28 TCGA-AC-A6IW-01 16 18856864 18856864 G A SMG1 Missense_Mutation p.H2036Y 0.25 deleterious(0) probably_damaging(0.968) TCGA-AC-A6IW-01 16 20043248 20043248 G A GPR139 Missense_Mutation p.R291W 0.08 deleterious(0.03) probably_damaging(0.993) TCGA-AC-A6IW-01 16 24043539 24043539 G C PRKCB Missense_Mutation p.G124A 0.21 deleterious(0) probably_damaging(0.987) TCGA-AC-A6IW-01 16 30958102 30958102 C G FBXL19 Missense_Mutation p.A580G 0.07 deleterious(0.02) possibly_damaging(0.815) TCGA-AC-A6IW-01 16 50070591 50070591 G C CNEP1R1 3'UTR 0.08 TCGA-AC-A6IW-01 16 87745012 87745012 G C KLHDC4 Silent p.V291V 0.33 TCGA-AC-A6IW-01 16 89579436 89579436 G A SPG7 Missense_Mutation p.E123K 0.20 tolerated(0.33) benign(0.097) TCGA-AC-A6IW-01 17 10356128 10356128 T C MYH4 Missense_Mutation p.Q1078R 0.12 tolerated(0.1) benign(0.012) TCGA-AC-A6IW-01 17 10366258 10366258 T C MYH4 Missense_Mutation p.Y311C 0.08 deleterious(0.02) probably_damaging(0.956) TCGA-AC-A6IW-01 17 17696337 17696337 A T RAI1 Silent p.S25S 0.17 TCGA-AC-A6IW-01 17 2593983 2593983 G A CLUH Missense_Mutation p.P1279S 0.17 tolerated_low_confidence(0.39) possibly_damaging(0.857) TCGA-AC-A6IW-01 17 27084983 27084983 G C FAM222B 3'UTR 0.16 TCGA-AC-A6IW-01 17 37054773 37054773 G C LASP1 Splice_Site p.X119_splice 0.12 TCGA-AC-A6IW-01 17 37791938 37791938 A G PPP1R1B Missense_Mutation p.D175G 0.14 tolerated_low_confidence(0.26) possibly_damaging(0.784) TCGA-AC-A6IW-01 17 38242995 38242995 G T THRA Missense_Mutation p.M204I 0.18 tolerated(0.23) benign(0.047) TCGA-AC-A6IW-01 17 40556897 40556897 C G PTRF Missense_Mutation p.K327N 0.39 deleterious(0) probably_damaging(0.978) TCGA-AC-A6IW-01 17 41585862 41585862 G C DHX8 Missense_Mutation p.D826H 0.34 deleterious(0) probably_damaging(0.934) TCGA-AC-A6IW-01 17 42929089 42929089 G C EFTUD2 Missense_Mutation p.R938G 0.22 deleterious(0) probably_damaging(1) TCGA-AC-A6IW-01 17 48459438 48459459 AGGGAGTTAATGCTCTAAAATT GGGAGTTAATGCTCTAAAATTG LRRC59 3'UTR 0.42 TCGA-AC-A6IW-01 17 7131351 7131351 C G DVL2 Silent p.L349L 0.20 TCGA-AC-A6IW-01 17 73809238 73809239 - C UNK Frame_Shift_Ins p.Y236Lfs*30 0.08 TCGA-AC-A6IW-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.52 tolerated(0.11) benign(0.308) TCGA-AC-A6IW-01 17 78350278 78350278 C T RNF213 Silent p.L4455L 0.15 TCGA-AC-A6IW-01 17 8384701 8384701 G T MYH10 Silent p.R1735R 0.17 TCGA-AC-A6IW-01 17 9820617 9820617 C T GAS7 Silent p.P453P 0.27 TCGA-AC-A6IW-01 18 13040953 13040953 C T CEP192 Missense_Mutation p.S645L 0.32 deleterious(0.01) possibly_damaging(0.57) TCGA-AC-A6IW-01 18 13087058 13087058 G C CEP192 Missense_Mutation p.E1887Q 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-AC-A6IW-01 18 21330920 21330920 A G LAMA3 Silent p.K241K 0.06 TCGA-AC-A6IW-01 18 29672796 29672796 C T RNF138 Silent p.P19P 0.30 TCGA-AC-A6IW-01 18 55314994 55314994 G C ATP8B1 3'UTR 0.12 TCGA-AC-A6IW-01 18 60244953 60244953 G T ZCCHC2 3'UTR 0.33 TCGA-AC-A6IW-01 19 16198889 16198889 G C TPM4 Missense_Mutation p.R182P 0.08 deleterious(0) probably_damaging(0.995) TCGA-AC-A6IW-01 19 16620357 16620357 C G C19orf44 Silent p.A399A 0.15 TCGA-AC-A6IW-01 19 1924219 1924219 C T SCAMP4 Missense_Mutation p.S209L 0.39 deleterious(0.01) possibly_damaging(0.589) TCGA-AC-A6IW-01 19 1924318 1924318 C T SCAMP4 3'UTR 0.32 TCGA-AC-A6IW-01 19 2273083 2273083 G C OAZ1 Missense_Mutation p.E221D 0.04 tolerated(1) unknown(0) TCGA-AC-A6IW-01 19 35514345 35514345 C T GRAMD1A Missense_Mutation p.T659M 0.22 deleterious(0) probably_damaging(0.912) TCGA-AC-A6IW-01 19 36159415 36159415 A G UPK1A Silent p.V48V 0.16 TCGA-AC-A6IW-01 19 36269471 36269471 C T ARHGAP33 Missense_Mutation p.P126S 0.07 tolerated_low_confidence(0.06) possibly_damaging(0.803) TCGA-AC-A6IW-01 19 36499552 36499552 A T SYNE4 Missense_Mutation p.L11H 0.13 tolerated_low_confidence(0.05) probably_damaging(0.984) TCGA-AC-A6IW-01 19 41397874 41397874 T C CYP2G1P RNA 0.24 TCGA-AC-A6IW-01 19 43697450 43697450 G A PSG4 3'UTR 0.41 TCGA-AC-A6IW-01 19 44377562 44377562 C G ZNF404 Silent p.V268V 0.49 TCGA-AC-A6IW-01 19 45324238 45324238 C T BCAM 3'UTR 0.25 TCGA-AC-A6IW-01 19 45324271 45324271 C T BCAM 3'UTR 0.19 TCGA-AC-A6IW-01 19 45324287 45324287 C G BCAM 3'UTR 0.16 TCGA-AC-A6IW-01 19 47969074 47969074 C G SLC8A2 Missense_Mutation p.R196T 0.30 deleterious(0) probably_damaging(0.99) TCGA-AC-A6IW-01 19 48048994 48048994 G A ZNF541 Silent p.S264S 0.12 TCGA-AC-A6IW-01 19 52780760 52780760 G A ZNF766 Intron 0.07 TCGA-AC-A6IW-01 19 55494387 55494387 G A NLRP2 Missense_Mutation p.A441T 0.26 tolerated(0.31) benign(0.16) TCGA-AC-A6IW-01 19 56888424 56888424 G C AC006116.24 RNA 0.10 TCGA-AC-A6IW-01 19 620447 620447 G C POLRMT Missense_Mutation p.T894R 0.18 deleterious(0) probably_damaging(0.964) TCGA-AC-A6IW-01 19 746627 746627 C T PALM Missense_Mutation p.A326V 0.13 deleterious(0) probably_damaging(1) TCGA-AC-A6IW-01 19 7535693 7535693 C T ARHGEF18 3'UTR 0.06 TCGA-AC-A6IW-01 19 7686046 7686046 G A XAB2 Silent p.D585D 0.06 TCGA-AC-A6IW-01 19 7811368 7811368 G C CD209 Silent p.L52L 0.16 TCGA-AC-A6IW-01 19 897375 897375 C T R3HDM4 3'UTR 0.26 TCGA-AC-A6IW-01 19 9724723 9724723 T C ZNF561 Missense_Mutation p.N100D 0.11 tolerated(0.48) probably_damaging(0.952) TCGA-AC-A6IW-01 19 9921831 9921831 G C FBXL12 Missense_Mutation p.S241C 0.15 deleterious(0) probably_damaging(0.921) TCGA-AC-A6IW-01 1 117626664 117626664 G A TTF2 Missense_Mutation p.G643E 0.23 deleterious(0) possibly_damaging(0.905) TCGA-AC-A6IW-01 1 13669035 13669035 A T PRAMEF14 Missense_Mutation p.L432Q 0.42 tolerated(1) benign(0.001) TCGA-AC-A6IW-01 1 143424160 143424160 T G MIR3118-3 RNA 0.07 TCGA-AC-A6IW-01 1 151787155 151787155 G A RORC Silent p.S276S 0.49 TCGA-AC-A6IW-01 1 154323669 154323669 G C ATP8B2 3'UTR 0.61 TCGA-AC-A6IW-01 1 158654983 158654983 C T SPTA1 Missense_Mutation p.R60Q 0.13 deleterious(0.01) benign(0.205) TCGA-AC-A6IW-01 1 159284308 159284308 T C OR10J3 Missense_Mutation p.T48A 0.10 tolerated(0.07) benign(0.081) TCGA-AC-A6IW-01 1 161139485 161139485 C T PPOX Silent p.H281H 0.07 TCGA-AC-A6IW-01 1 169510326 169510326 G A F5 Silent p.F1334F 0.11 TCGA-AC-A6IW-01 1 17607217 17607217 G A PADI3 Missense_Mutation p.E563K 0.17 deleterious(0) possibly_damaging(0.895) TCGA-AC-A6IW-01 1 176668454 176668454 G C PAPPA2 Missense_Mutation p.E989Q 0.10 tolerated(0.21) benign(0.353) TCGA-AC-A6IW-01 1 180904978 180904978 C T KIAA1614 Missense_Mutation p.P645S 0.25 tolerated(0.08) benign(0.256) TCGA-AC-A6IW-01 1 201434981 201434981 C G PHLDA3 3'UTR 0.38 TCGA-AC-A6IW-01 1 205057452 205057452 G T RBBP5 3'UTR 0.13 TCGA-AC-A6IW-01 1 225339726 225339726 G A DNAH14 Missense_Mutation p.E734K 0.35 deleterious(0.05) benign(0.109) TCGA-AC-A6IW-01 1 244871704 244871704 G A DESI2 3'UTR 0.17 TCGA-AC-A6IW-01 1 246755119 246755119 G C CNST Missense_Mutation p.E85D 0.18 tolerated(0.2) benign(0.034) TCGA-AC-A6IW-01 1 248084363 248084363 T C OR2T8 Missense_Mutation p.L15P 0.11 deleterious(0.01) probably_damaging(0.977) TCGA-AC-A6IW-01 1 248308745 248308745 C T OR2M5 Missense_Mutation p.T99I 0.08 tolerated(0.98) benign(0.019) TCGA-AC-A6IW-01 1 2939161 2939161 G T ACTRT2 Missense_Mutation p.G304V 0.17 deleterious(0) probably_damaging(1) TCGA-AC-A6IW-01 1 35885523 35885523 C T ZMYM4 3'UTR 0.08 TCGA-AC-A6IW-01 1 41088542 41088542 G C RIMS3 3'UTR 0.26 TCGA-AC-A6IW-01 1 42050289 42050289 C T HIVEP3 Silent p.P60P 0.12 TCGA-AC-A6IW-01 1 46511688 46511688 G A PIK3R3 Silent p.I363I 0.08 TCGA-AC-A6IW-01 1 47155317 47155317 G A EFCAB14 Missense_Mutation p.P246L 0.19 tolerated(0.23) benign(0.015) TCGA-AC-A6IW-01 1 57221592 57221592 C T C1orf168 Silent p.K369K 0.15 TCGA-AC-A6IW-01 1 64059390 64059390 C G PGM1 Missense_Mutation p.I77M 0.29 tolerated(1) benign(0.037) TCGA-AC-A6IW-01 1 71318421 71318421 G A PTGER3 3'UTR 0.19 TCGA-AC-A6IW-01 1 94995682 94995682 T A F3 3'UTR 0.05 TCGA-AC-A6IW-01 1 95616906 95616906 G C TMEM56 Missense_Mutation p.W110C 0.17 deleterious(0) probably_damaging(0.984) TCGA-AC-A6IW-01 20 32263631 32263631 G C E2F1 3'UTR 0.12 TCGA-AC-A6IW-01 20 33345853 33345853 G T NCOA6 Nonsense_Mutation p.S233* 0.46 TCGA-AC-A6IW-01 20 3914549 3914549 G C RNF24 3'UTR 0.15 TCGA-AC-A6IW-01 20 56821095 56821095 G A PPP4R1L Silent p.P246P 0.08 TCGA-AC-A6IW-01 20 56993296 56993296 C G VAPB Missense_Mutation p.L30V 0.27 deleterious(0) probably_damaging(0.998) TCGA-AC-A6IW-01 20 57766279 57766279 G A ZNF831 Missense_Mutation p.G69R 0.11 deleterious(0) probably_damaging(0.999) TCGA-AC-A6IW-01 21 27347435 27347435 C T APP Missense_Mutation p.R469H 0.11 deleterious(0.01) probably_damaging(1) TCGA-AC-A6IW-01 22 34000534 34000534 G A LARGE Silent p.L168L 0.17 TCGA-AC-A6IW-01 22 36597788 36597788 G C APOL4 Intron 0.08 TCGA-AC-A6IW-01 22 45278842 45278842 C A PHF21B 3'UTR 0.14 TCGA-AC-A6IW-01 2 108910132 108910132 G A SULT1C2 Silent p.L3L 0.30 TCGA-AC-A6IW-01 2 148653888 148653888 C T ACVR2A Missense_Mutation p.S25L 0.39 tolerated(0.3) benign(0.004) TCGA-AC-A6IW-01 2 170557634 170557634 C G PHOSPHO2 Silent p.V51V 0.14 TCGA-AC-A6IW-01 2 187500936 187500936 T A ITGAV Splice_Site p.X253_splice 0.11 TCGA-AC-A6IW-01 2 202149947 202149947 C T CASP8 Missense_Mutation p.A463V 0.38 deleterious(0) probably_damaging(0.989) TCGA-AC-A6IW-01 2 212247317 212247317 G A ERBB4 3'UTR 0.25 TCGA-AC-A6IW-01 2 220493217 220493217 G A SLC4A3 Missense_Mutation p.G48R 0.45 tolerated_low_confidence(0.09) probably_damaging(0.967) TCGA-AC-A6IW-01 2 23980339 23980339 A C ATAD2B Missense_Mutation p.L1343V 0.17 tolerated(0.57) benign(0.006) TCGA-AC-A6IW-01 2 27281280 27281280 A G AGBL5 Missense_Mutation p.M562V 0.09 tolerated(0.65) benign(0) TCGA-AC-A6IW-01 2 37302663 37302663 C G HEATR5B Missense_Mutation p.D188H 0.21 deleterious(0) probably_damaging(0.996) TCGA-AC-A6IW-01 2 46234756 46234756 G A PRKCE Missense_Mutation p.E407K 0.31 deleterious(0) benign(0.002) TCGA-AC-A6IW-01 2 46770179 46770179 C T RHOQ 5'UTR 0.26 TCGA-AC-A6IW-01 2 47709915 47709915 C T MSH2 Intron 0.09 TCGA-AC-A6IW-01 3 124689418 124689418 G A HEG1 3'UTR 0.19 TCGA-AC-A6IW-01 3 135721385 135721385 C G PPP2R3A Missense_Mutation p.Q349E 0.52 tolerated_low_confidence(0.43) benign(0.058) TCGA-AC-A6IW-01 3 151171503 151171503 G A IGSF10 Silent p.L128L 0.58 TCGA-AC-A6IW-01 3 159710850 159710850 G A IL12A Missense_Mutation p.E106K 0.55 deleterious(0) probably_damaging(0.973) TCGA-AC-A6IW-01 3 167031861 167031861 T A ZBBX Missense_Mutation p.N440Y 0.20 deleterious(0) possibly_damaging(0.61) TCGA-AC-A6IW-01 3 171571452 171571452 G A TMEM212 Missense_Mutation p.G119S 0.25 tolerated(0.11) probably_damaging(0.95) TCGA-AC-A6IW-01 3 186507567 186507567 G A EIF4A2 3'UTR 0.12 TCGA-AC-A6IW-01 3 49571454 49571454 G A DAG1 3'UTR 0.11 TCGA-AC-A6IW-01 3 49695024 49695024 G C BSN Missense_Mutation p.D2679H 0.48 unknown(0) TCGA-AC-A6IW-01 3 53852178 53852178 C G CHDH Missense_Mutation p.E471Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-AC-A6IW-01 3 57280250 57280250 G C APPL1 Missense_Mutation p.Q207H 0.14 tolerated(0.06) possibly_damaging(0.633) TCGA-AC-A6IW-01 3 86989594 86989594 A G VGLL3 3'UTR 0.11 TCGA-AC-A6IW-01 3 98510745 98510745 G A ST3GAL6 Missense_Mutation p.E273K 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-AC-A6IW-01 4 153268090 153268090 T - FBXW7 Frame_Shift_Del p.M240Cfs*14 0.31 TCGA-AC-A6IW-01 4 169432677 169432677 G C PALLD Missense_Mutation p.E8Q 0.42 tolerated(0.09) benign(0.001) TCGA-AC-A6IW-01 4 435952 435952 C G ZNF721 Silent p.L768L 0.11 TCGA-AC-A6IW-01 4 4864425 4864425 C T MSX1 Intron 0.24 TCGA-AC-A6IW-01 5 137534359 137534359 T A CDC23 Missense_Mutation p.D256V 0.13 tolerated(0.09) benign(0.09) TCGA-AC-A6IW-01 5 34923333 34923333 C G BRIX1 Missense_Mutation p.N219K 0.05 deleterious(0) probably_damaging(0.998) TCGA-AC-A6IW-01 5 54468137 54468138 - T CDC20B Intron 0.12 TCGA-AC-A6IW-01 5 68804965 68804965 C T OCLN Intron 0.55 TCGA-AC-A6IW-01 5 92923872 92923872 C A NR2F1 Missense_Mutation p.P238H 0.11 deleterious(0.01) probably_damaging(1) TCGA-AC-A6IW-01 6 106553770 106553770 G A PRDM1 Missense_Mutation p.V579I 0.18 tolerated(0.33) benign(0.172) TCGA-AC-A6IW-01 6 155154083 155154083 C T SCAF8 Missense_Mutation p.R1124W 0.28 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-AC-A6IW-01 6 17130936 17130936 C T STMND1 Missense_Mutation p.L219F 0.30 tolerated(0.7) benign(0.05) TCGA-AC-A6IW-01 6 20491843 20491843 G A E2F3 3'UTR 0.11 TCGA-AC-A6IW-01 6 24505161 24505161 T A ALDH5A1 Missense_Mutation p.V225D 0.14 deleterious(0) probably_damaging(0.958) TCGA-AC-A6IW-01 6 26217262 26217262 C T HIST1H2AE Silent p.S20S 0.12 TCGA-AC-A6IW-01 6 26252107 26252107 G C HIST1H2BH Missense_Mutation p.E77Q 0.11 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-AC-A6IW-01 6 27115184 27115184 G A HIST1H2AH Missense_Mutation p.E93K 0.07 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-AC-A6IW-01 6 27783084 27783084 C T HIST1H2BM Missense_Mutation p.S88L 0.12 deleterious_low_confidence(0.02) benign(0.153) TCGA-AC-A6IW-01 6 30166820 30166820 C G TRIM26 Missense_Mutation p.D21H 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-AC-A6IW-01 6 31474117 31474117 A G MICB Missense_Mutation p.K175E 0.08 tolerated(0.18) probably_damaging(0.998) TCGA-AC-A6IW-01 6 33130933 33130933 G A COL11A2 3'UTR 0.11 TCGA-AC-A6IW-01 6 33169197 33169197 A G SLC39A7 Missense_Mutation p.S59G 0.09 tolerated(0.13) unknown(0) TCGA-AC-A6IW-01 6 37143155 37143156 - T PIM1 3'UTR 0.15 TCGA-AC-A6IW-01 6 43275453 43275453 G A CRIP3 Silent p.Y75Y 0.57 TCGA-AC-A6IW-01 6 69348608 69348608 C A BAI3 Missense_Mutation p.T14N 0.16 tolerated(0.16) probably_damaging(0.95) TCGA-AC-A6IW-01 6 70897949 70897949 G A COL19A1 Silent p.P1009P 0.18 TCGA-AC-A6IW-01 6 83075125 83075125 C G TPBG Silent p.L149L 0.20 TCGA-AC-A6IW-01 7 120446664 120446664 C T TSPAN12 Missense_Mutation p.R184K 0.31 tolerated(0.48) benign(0.001) TCGA-AC-A6IW-01 7 122261600 122261600 C G CADPS2 Missense_Mutation p.D347H 0.05 deleterious(0) probably_damaging(0.923) TCGA-AC-A6IW-01 7 140255469 140255469 C G DENND2A Silent p.V668V 0.45 TCGA-AC-A6IW-01 7 142457357 142457358 AC - PRSS1 Frame_Shift_Del p.T8Lfs*11 0.39 TCGA-AC-A6IW-01 7 142560919 142560919 A G EPHB6 5'UTR 0.12 TCGA-AC-A6IW-01 7 30661938 30661938 A G GARS Silent p.T491T 0.06 TCGA-AC-A6IW-01 7 35872459 35872459 G C SEPT7 Missense_Mutation p.V41L 0.08 tolerated(0.08) benign(0.278) TCGA-AC-A6IW-01 7 64438953 64438953 G A ZNF117 Silent p.P332P 0.10 TCGA-AC-A6IW-01 7 76826136 76826136 C G FGL2 Silent p.G260G 0.11 TCGA-AC-A6IW-01 7 87160748 87160748 T C ABCB1 Missense_Mutation p.I849M 0.23 deleterious(0.04) probably_damaging(0.99) TCGA-AC-A6IW-01 7 99669207 99669207 G A ZNF3 Silent p.T300T 0.10 TCGA-AC-A6IW-01 8 118188644 118188644 T G SLC30A8 3'Flank 0.17 TCGA-AC-A6IW-01 8 122641530 122641530 G C HAS2 Silent p.L17L 0.16 TCGA-AC-A6IW-01 8 12287881 12287881 T A FAM86B2 Missense_Mutation p.Q107L 0.04 tolerated(0.34) benign(0.001) TCGA-AC-A6IW-01 8 145059114 145059114 C T PARP10 Missense_Mutation p.M352I 0.10 tolerated(0.4) benign(0) TCGA-AC-A6IW-01 8 146229030 146229030 G A ZNF252P-AS1 RNA 0.12 TCGA-AC-A6IW-01 8 24358353 24358353 G C ADAM7 Missense_Mutation p.V685L 0.05 tolerated(0.22) benign(0.006) TCGA-AC-A6IW-01 8 26220199 26220199 G C PPP2R2A Splice_Site p.X223_splice 0.14 TCGA-AC-A6IW-01 8 2819985 2819985 T G CSMD1 Intron 0.09 TCGA-AC-A6IW-01 8 30643755 30643755 A C PPP2CB Missense_Mutation p.L309R 0.07 deleterious(0) possibly_damaging(0.883) TCGA-AC-A6IW-01 8 38107300 38107300 C T DDHD2 Silent p.F441F 0.47 TCGA-AC-A6IW-01 8 40389693 40389693 G A ZMAT4 3'UTR 0.09 TCGA-AC-A6IW-01 8 48805886 48805886 G T PRKDC Silent p.L1220L 0.38 TCGA-AC-A6IW-01 8 57026124 57026124 C T MOS Missense_Mutation p.E140K 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A6IW-01 8 59718106 59718106 C G TOX 3'UTR 0.09 TCGA-AC-A6IW-01 8 95404048 95404048 T C RAD54B Missense_Mutation p.E533G 0.04 deleterious(0) probably_damaging(0.995) TCGA-AC-A6IW-01 9 135977525 135977525 G A RALGDS Missense_Mutation p.R671C 0.09 tolerated(0.14) unknown(0) TCGA-AC-A6IW-01 9 32986024 32986024 G A APTX Missense_Mutation p.S163F 0.09 tolerated(0.66) benign(0.088) TCGA-AC-A6IW-01 9 33676217 33676217 A T PTENP1 RNA 0.09 TCGA-AC-A6IW-01 9 33923894 33923894 G A UBAP2 Nonsense_Mutation p.Q899* 0.15 TCGA-AC-A6IW-01 9 73225556 73225556 T C TRPM3 Missense_Mutation p.N867S 0.10 tolerated(0.14) possibly_damaging(0.672) TCGA-AC-A6IW-01 X 14915219 14915219 G T MOSPD2 Silent p.V112V 0.17 TCGA-AC-A6IW-01 X 152614694 152614694 G C ZNF275 3'UTR 0.21 TCGA-AC-A6IW-01 X 153050573 153050573 C T SRPK3 Silent p.I488I 0.07 TCGA-AC-A6IW-01 X 3238324 3238324 G C MXRA5 Missense_Mutation p.T1801S 0.14 tolerated(0.09) benign(0.293) TCGA-AC-A6IW-01 X 73040412 73040412 G C TSIX RNA 0.25 TCGA-AC-A6IX-01 10 102799424 102799424 C T SFXN3 3'UTR 0.19 TCGA-AC-A6IX-01 10 120443832 120443832 G T CACUL1 3'UTR 0.36 TCGA-AC-A6IX-01 11 1016356 1016356 G A MUC6 Missense_Mutation p.H2149Y 0.23 benign(0) TCGA-AC-A6IX-01 11 14880681 14880681 T C PDE3B Silent p.L871L 0.06 TCGA-AC-A6IX-01 11 35017174 35017174 A G PDHX 3'UTR 0.15 TCGA-AC-A6IX-01 11 4944836 4944836 G A OR51G1 Missense_Mutation p.S245F 0.38 deleterious(0) probably_damaging(0.995) TCGA-AC-A6IX-01 11 64573223 64573223 C G MEN1 Missense_Mutation p.D362H 0.27 deleterious(0) probably_damaging(1) TCGA-AC-A6IX-01 11 65270018 65270018 T C MALAT1 RNA 0.21 TCGA-AC-A6IX-01 12 122763489 122763489 C T CLIP1 Missense_Mutation p.V1256I 0.21 tolerated(0.62) probably_damaging(0.946) TCGA-AC-A6IX-01 12 49958562 49958562 C T MCRS1 Nonsense_Mutation p.W148* 0.24 TCGA-AC-A6IX-01 12 56232491 56232491 T A MMP19 Missense_Mutation p.E265V 0.24 tolerated(0.19) benign(0.003) TCGA-AC-A6IX-01 12 56716413 56716413 G A PAN2 Missense_Mutation p.H879Y 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-AC-A6IX-01 13 48985919 48985919 G A LPAR6 Missense_Mutation p.P214L 0.24 deleterious(0) probably_damaging(0.998) TCGA-AC-A6IX-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.15 deleterious(0) probably_damaging(0.999) TCGA-AC-A6IX-01 14 22356669 22356669 C T TRAV12-2 Silent p.L109L 0.22 TCGA-AC-A6IX-01 14 24664204 24664204 G C TM9SF1 Missense_Mutation p.R8G 0.21 tolerated_low_confidence(0.12) benign(0.001) TCGA-AC-A6IX-01 14 30107966 30107966 G A PRKD1 Missense_Mutation p.P281S 0.27 deleterious(0) probably_damaging(0.998) TCGA-AC-A6IX-01 14 68271995 68271995 C T ZFYVE26 Missense_Mutation p.D404N 0.22 tolerated(0.09) probably_damaging(0.964) TCGA-AC-A6IX-01 15 101188631 101188631 G A ASB7 Missense_Mutation p.M307I 0.34 tolerated_low_confidence(0.14) benign(0.018) TCGA-AC-A6IX-01 15 62246720 62246720 G A VPS13C Missense_Mutation p.S1400L 0.27 tolerated(0.26) benign(0.001) TCGA-AC-A6IX-01 15 83485546 83485546 C G WHAMM Missense_Mutation p.Q296E 0.05 deleterious(0) probably_damaging(0.997) TCGA-AC-A6IX-01 16 5133741 5133741 C T ALG1 Silent p.L416L 0.19 TCGA-AC-A6IX-01 16 67709097 67709097 G C GFOD2 Missense_Mutation p.N373K 0.29 tolerated(0.09) benign(0.299) TCGA-AC-A6IX-01 16 68853325 68853325 A - CDH1 Frame_Shift_Del p.N570Mfs*14 0.26 TCGA-AC-A6IX-01 19 1506063 1506064 GG - ADAMTSL5 Frame_Shift_Del p.P456Cfs*32 0.23 TCGA-AC-A6IX-01 19 17611194 17611194 C T SLC27A1 Silent p.L438L 0.29 TCGA-AC-A6IX-01 19 50204862 50204862 C T CPT1C Missense_Mutation p.R222W 0.29 tolerated(0.19) benign(0.001) TCGA-AC-A6IX-01 1 110086373 110086373 G A GPR61 Silent p.G243G 0.19 TCGA-AC-A6IX-01 1 144828572 144828572 C G NBPF9 Missense_Mutation p.P614A 0.47 deleterious(0.03) benign(0.346) TCGA-AC-A6IX-01 1 150771683 150771683 C T CTSK Missense_Mutation p.G284E 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A6IX-01 1 150771738 150771738 C T CTSK Missense_Mutation p.D266N 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A6IX-01 1 150772056 150772056 C T CTSK Missense_Mutation p.D250N 0.07 deleterious(0.02) probably_damaging(1) TCGA-AC-A6IX-01 1 150772099 150772099 C T CTSK Silent p.L235L 0.08 TCGA-AC-A6IX-01 1 150772139 150772139 C T CTSK Missense_Mutation p.R222K 0.09 tolerated(0.22) benign(0.001) TCGA-AC-A6IX-01 1 154956001 154956001 G C FLAD1 5'UTR 0.16 TCGA-AC-A6IX-01 1 228595720 228595720 A G TRIM17 3'UTR 0.28 TCGA-AC-A6IX-01 1 2434238 2434238 C T PLCH2 Missense_Mutation p.R1090C 0.36 tolerated_low_confidence(0.08) benign(0) TCGA-AC-A6IX-01 1 245848835 245848835 C T KIF26B Silent p.S850S 0.42 TCGA-AC-A6IX-01 1 248616462 248616462 G A OR2T2 Missense_Mutation p.D122N 0.06 deleterious(0) probably_damaging(0.997) TCGA-AC-A6IX-01 1 40703598 40703598 C T RLF Missense_Mutation p.S1075L 0.25 deleterious(0.02) benign(0.138) TCGA-AC-A6IX-01 1 76190269 76190269 T C ACADM 5'Flank 0.21 TCGA-AC-A6IX-01 1 94140385 94140385 G C BCAR3 Silent p.L34L 0.22 TCGA-AC-A6IX-01 20 48503419 48503419 G A SLC9A8 Missense_Mutation p.R557Q 0.21 deleterious(0) probably_damaging(0.989) TCGA-AC-A6IX-01 20 56137866 56137866 C G PCK1 Missense_Mutation p.T174R 0.32 deleterious(0) probably_damaging(1) TCGA-AC-A6IX-01 21 33948134 33948134 G A AP000275.65 3'Flank 0.33 TCGA-AC-A6IX-01 21 33948137 33948137 G A AP000275.65 3'Flank 0.33 TCGA-AC-A6IX-01 21 46309309 46309309 G A ITGB2 Missense_Mutation p.R587C 0.32 deleterious(0.01) benign(0.428) TCGA-AC-A6IX-01 22 20920781 20920781 C G MED15 Missense_Mutation p.R240G 0.27 tolerated_low_confidence(0.31) unknown(0) TCGA-AC-A6IX-01 2 131519854 131519854 C T AMER3 Missense_Mutation p.A70V 0.23 tolerated(0.24) benign(0.022) TCGA-AC-A6IX-01 2 190569937 190569937 G A ANKAR Missense_Mutation p.E633K 0.11 tolerated(0.12) possibly_damaging(0.721) TCGA-AC-A6IX-01 2 73800138 73800138 G C ALMS1 Missense_Mutation p.E3711Q 0.17 probably_damaging(0.999) TCGA-AC-A6IX-01 3 119306323 119306323 A T ADPRH Missense_Mutation p.Q224H 0.20 deleterious(0.02) benign(0.105) TCGA-AC-A6IX-01 3 130282379 130282379 G A COL6A6 Missense_Mutation p.A178T 0.31 deleterious(0) probably_damaging(0.995) TCGA-AC-A6IX-01 3 93646151 93646151 G A PROS1 Silent p.I59I 0.30 TCGA-AC-A6IX-01 4 176554412 176554412 C T GPM6A 3'UTR 0.29 TCGA-AC-A6IX-01 5 140174693 140174693 C T PCDHA2 Silent p.I48I 0.27 TCGA-AC-A6IX-01 5 145583190 145583190 G A RBM27 5'UTR 0.33 TCGA-AC-A6IX-01 5 89755903 89755903 C T MBLAC2 3'UTR 0.24 TCGA-AC-A6IX-01 6 126210527 126210527 G A NCOA7 Missense_Mutation p.D443N 0.22 tolerated_low_confidence(0.07) benign(0.03) TCGA-AC-A6IX-01 6 42713524 42713524 T C TBCC Silent p.K96K 0.20 TCGA-AC-A6IX-01 6 42980214 42980214 C A MEA1 Missense_Mutation p.W184C 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A6IX-01 6 74228182 74228183 CA - EEF1A1 Frame_Shift_Del p.V308Gfs*20 0.14 TCGA-AC-A6IX-01 6 7883472 7883472 A G TXNDC5 Missense_Mutation p.F402L 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-AC-A6IX-01 7 108204635 108204635 C G THAP5 Nonstop_Mutation p.*396Yext*3 0.08 TCGA-AC-A6IX-01 7 99796515 99796515 C T STAG3 Missense_Mutation p.R468C 0.24 deleterious(0) benign(0.091) TCGA-AC-A6IX-01 8 101165689 101165689 G A POLR2K 3'UTR 0.62 TCGA-AC-A6IX-01 8 110131640 110131640 G C TRHR Missense_Mutation p.D385H 0.46 tolerated_low_confidence(0.08) benign(0.086) TCGA-AC-A6IX-01 8 2048834 2048834 G A MYOM2 Missense_Mutation p.R870H 0.28 tolerated(0.1) benign(0.103) TCGA-AC-A6IX-01 8 23432310 23432310 C T FP15737 3'UTR 0.09 TCGA-AC-A6IX-01 8 418728 418728 C G FBXO25 Missense_Mutation p.P343R 0.35 deleterious(0) probably_damaging(1) TCGA-AC-A6IX-01 8 73849171 73849171 G A KCNB2 Silent p.T527T 0.17 TCGA-AC-A6IX-01 X 100276975 100276975 G A TRMT2B Missense_Mutation p.S278L 0.27 deleterious(0) probably_damaging(0.998) TCGA-AC-A6IX-01 X 129265721 129265721 C T AIFM1 Missense_Mutation p.S501N 0.20 deleterious(0.03) benign(0.013) TCGA-AC-A6IX-01 X 37028270 37028270 C T FAM47C Missense_Mutation p.P596L 0.28 tolerated(0.07) benign(0.026) TCGA-AC-A6NO-01 10 114910780 114910780 C T TCF7L2 Missense_Mutation p.P300L 0.30 tolerated(0.19) probably_damaging(1) TCGA-AC-A6NO-01 10 72015571 72015571 G T NPFFR1 Silent p.I145I 0.45 TCGA-AC-A6NO-01 10 8111452 8111452 C - GATA3 Frame_Shift_Del p.A314Efs*42 0.29 TCGA-AC-A6NO-01 11 119058384 119058384 T A PDZD3 Missense_Mutation p.F211Y 0.14 tolerated(0.72) benign(0.025) TCGA-AC-A6NO-01 11 60785461 60785461 G A CD6 Missense_Mutation p.A605T 0.12 deleterious(0.01) probably_damaging(0.927) TCGA-AC-A6NO-01 11 62554031 62554031 G A TAF6L Missense_Mutation p.E378K 0.21 tolerated(0.1) benign(0.075) TCGA-AC-A6NO-01 11 6411696 6411696 C T SMPD1 5'UTR 0.28 TCGA-AC-A6NO-01 12 11000995 11000995 C T PRR4 Missense_Mutation p.E26K 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.486) TCGA-AC-A6NO-01 12 675051 675051 G A NINJ2 Intron 0.21 TCGA-AC-A6NO-01 14 19988020 19988020 G T POTEM 3'UTR 0.21 TCGA-AC-A6NO-01 15 79291086 79291086 C G RASGRF1 Missense_Mutation p.R959P 0.35 deleterious(0) probably_damaging(0.956) TCGA-AC-A6NO-01 15 94910944 94910945 - G MCTP2 Frame_Shift_Ins p.V473Gfs*5 0.40 TCGA-AC-A6NO-01 16 31120870 31120870 T C BCKDK Silent p.A78A 0.56 TCGA-AC-A6NO-01 17 36099446 36099446 G A HNF1B Nonsense_Mutation p.R177* 0.38 TCGA-AC-A6NO-01 18 59854900 59854900 G T KIAA1468 Silent p.S54S 0.16 TCGA-AC-A6NO-01 18 59854901 59854901 C T KIAA1468 Silent p.L55L 0.15 TCGA-AC-A6NO-01 19 58513625 58513625 G A CTD-2368P22.1 Silent p.R49R 0.12 TCGA-AC-A6NO-01 1 110884587 110884587 C T RBM15 Missense_Mutation p.P854S 0.32 tolerated(0.29) benign(0.055) TCGA-AC-A6NO-01 1 147380976 147380976 T C GJA8 Silent p.N298N 0.06 TCGA-AC-A6NO-01 1 172011177 172011177 G C DNM3 Missense_Mutation p.E341Q 0.13 tolerated(0.15) possibly_damaging(0.492) TCGA-AC-A6NO-01 1 202572237 202572237 C T SYT2 Missense_Mutation p.D119N 0.45 tolerated(0.13) benign(0.008) TCGA-AC-A6NO-01 1 22202425 22202425 G A HSPG2 Silent p.I1038I 0.31 TCGA-AC-A6NO-01 1 242048800 242048800 G T EXO1 Missense_Mutation p.G799V 0.15 tolerated(0.07) benign(0.043) TCGA-AC-A6NO-01 1 8414729 8414729 T C RERE 3'UTR 0.10 TCGA-AC-A6NO-01 20 1286008 1286008 G A SNPH Silent p.S265S 0.28 TCGA-AC-A6NO-01 20 4202542 4202542 G A ADRA1D Silent p.C449C 0.20 TCGA-AC-A6NO-01 21 36259184 36259184 G A RUNX1 Missense_Mutation p.P103S 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-AC-A6NO-01 2 170606585 170606585 C T KLHL23 3'UTR 0.15 TCGA-AC-A6NO-01 2 225670000 225670000 C T DOCK10 Missense_Mutation p.R1325Q 0.28 tolerated(0.12) probably_damaging(0.997) TCGA-AC-A6NO-01 3 118931157 118931157 A G B4GALT4 3'UTR 0.32 TCGA-AC-A6NO-01 3 137717705 137717705 G A CLDN18 5'UTR 0.42 TCGA-AC-A6NO-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.21 deleterious(0.02) probably_damaging(0.965) TCGA-AC-A6NO-01 3 22424272 22424272 T C HMGB1P5 RNA 0.08 TCGA-AC-A6NO-01 3 52581562 52581563 - A PBRM1 3'Flank 0.15 TCGA-AC-A6NO-01 6 100057166 100057166 C T PRDM13 Missense_Mutation p.P127L 0.11 deleterious(0) benign(0.351) TCGA-AC-A6NO-01 6 43266186 43266186 G T SLC22A7 Silent p.L30L 0.12 TCGA-AC-A6NO-01 6 85446849 85446849 C T TBX18 Missense_Mutation p.V460M 0.38 tolerated(0.3) benign(0.014) TCGA-AC-A6NO-01 7 116411563 116411563 A T MET Silent p.A932A 0.06 TCGA-AC-A6NO-01 7 139026005 139026005 C T C7orf55 5'UTR 0.12 TCGA-AC-A6NO-01 7 77004403 77004403 C T GSAP Missense_Mutation p.D253N 0.61 deleterious(0.01) possibly_damaging(0.784) TCGA-AC-A6NO-01 8 110255207 110255207 C T NUDCD1 3'UTR 0.11 TCGA-AC-A6NO-01 X 102632497 102632497 A G NGFRAP1 Silent p.G26G 0.04 TCGA-AC-A6NO-01 X 134166686 134166686 C A FAM127A Silent p.L91L 0.57 TCGA-AC-A6NO-01 X 135426728 135426728 A G GPR112 Missense_Mutation p.N288S 0.50 deleterious(0.04) benign(0.007) TCGA-AC-A6NO-01 X 55479453 55479453 T C MAGEH1 Missense_Mutation p.Y216H 0.53 tolerated_low_confidence(0.26) benign(0) TCGA-AC-A6NO-01 X 69553539 69553539 C T KIF4A Missense_Mutation p.T378I 0.07 tolerated(0.25) benign(0.001) TCGA-AC-A7VB-01 11 18955973 18955973 C T MRGPRX1 Missense_Mutation p.R120H 0.25 tolerated(0.06) possibly_damaging(0.458) TCGA-AC-A7VB-01 11 5153267 5153267 G A OR52A5 Silent p.G202G 0.33 TCGA-AC-A7VB-01 11 66627618 66627618 C A LRFN4 Nonsense_Mutation p.C620* 0.44 TCGA-AC-A7VB-01 11 6977662 6977662 C T ZNF215 Missense_Mutation p.T485M 0.41 deleterious(0) probably_damaging(0.999) TCGA-AC-A7VB-01 12 7053923 7053923 C T C12orf57 Intron 0.11 TCGA-AC-A7VB-01 14 107034993 107034993 C T IGHV5-51 Silent p.E29E 0.41 TCGA-AC-A7VB-01 14 23540646 23540646 G A ACIN1 Intron 0.40 TCGA-AC-A7VB-01 15 48494490 48494490 T C CTXN2 3'UTR 0.10 TCGA-AC-A7VB-01 17 35298014 35298014 A T LHX1 Missense_Mutation p.N169Y 0.37 deleterious(0.01) probably_damaging(0.91) TCGA-AC-A7VB-01 17 46673820 46673820 C T HOXB6 Silent p.A210A 0.37 TCGA-AC-A7VB-01 19 45912817 45912819 AGA - ERCC1 3'Flank 0.46 TCGA-AC-A7VB-01 1 176564627 176564627 C T PAPPA2 Silent p.H629H 0.58 TCGA-AC-A7VB-01 1 196250017 196250017 A G KCNT2 Silent p.T961T 0.32 TCGA-AC-A7VB-01 1 201938860 201938862 ATA - TIMM17A 3'UTR 0.18 TCGA-AC-A7VB-01 1 203770960 203770960 A T ZC3H11A 5'UTR 0.04 TCGA-AC-A7VB-01 1 204210812 204210812 C T PLEKHA6 Splice_Site p.X768_splice 0.41 TCGA-AC-A7VB-01 1 27332464 27332464 C T FAM46B Missense_Mutation p.A417T 0.17 tolerated(0.57) benign(0.002) TCGA-AC-A7VB-01 1 39494602 39494602 G A NDUFS5 Missense_Mutation p.R69Q 0.36 tolerated(0.06) possibly_damaging(0.619) TCGA-AC-A7VB-01 20 2592921 2592921 C T TMC2 Missense_Mutation p.P560S 0.38 tolerated(0.17) benign(0.096) TCGA-AC-A7VB-01 22 18835412 18835412 G A AC008132.13 Missense_Mutation p.G323D 0.25 deleterious(0.04) possibly_damaging(0.818) TCGA-AC-A7VB-01 2 113033564 113033564 G T ZC3H6 5'UTR 0.48 TCGA-AC-A7VB-01 2 238280924 238280924 G A COL6A3 Missense_Mutation p.P1246S 0.45 benign(0.223) TCGA-AC-A7VB-01 2 46987613 46987613 T C SOCS5 3'UTR 0.24 TCGA-AC-A7VB-01 2 96952761 96952762 AG T SNRNP200 Frame_Shift_Del p.D1207Efs*26 0.32 TCGA-AC-A7VB-01 3 126236546 126236546 G A UROC1 Missense_Mutation p.A6V 0.50 tolerated(0.2) benign(0.001) TCGA-AC-A7VB-01 3 128292938 128292938 G C C3orf27 5'UTR 0.48 TCGA-AC-A7VB-01 4 17600168 17600168 C T LAP3 Silent p.A389A 0.50 TCGA-AC-A7VB-01 5 140249080 140249080 C T PCDHA11 Missense_Mutation p.P131L 0.48 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AC-A7VB-01 5 140348914 140348914 G T PCDHAC2 Nonsense_Mutation p.E855* 0.36 TCGA-AC-A7VB-01 6 121768819 121768819 G A GJA1 Missense_Mutation p.A276T 0.38 tolerated(0.17) benign(0.074) TCGA-AC-A7VB-01 6 39282490 39282490 C T KCNK16 3'Flank 0.50 TCGA-AC-A7VB-01 7 1197869 1197869 C T ZFAND2A 5'UTR 0.40 TCGA-AC-A7VB-01 8 66637069 66637076 ATGGGACC - PDE7A Frame_Shift_Del p.R334Ifs*3 0.25 TCGA-AC-A7VB-01 9 130211586 130211586 G C RPL12 Missense_Mutation p.P89R 0.57 deleterious(0) benign(0.326) TCGA-AC-A7VB-01 9 130211619 130211619 G A RPL12 Missense_Mutation p.S78F 0.54 deleterious(0.03) probably_damaging(0.99) TCGA-AC-A7VB-01 9 379812 379812 G A DOCK8 Missense_Mutation p.A828T 0.39 deleterious(0.03) benign(0.094) TCGA-AC-A7VB-01 9 95147260 95147260 G A OGN 3'UTR 0.58 TCGA-AC-A7VB-01 X 12906091 12906091 G A TLR7 Missense_Mutation p.G822S 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-AC-A7VB-01 X 132351257 132351257 G T TFDP3 Missense_Mutation p.A344E 0.42 tolerated(0.09) benign(0.013) TCGA-AC-A7VC-01 10 77157840 77157840 C T ZNF503 3'UTR 0.26 TCGA-AC-A7VC-01 12 11420584 11420584 C T PRB3 Missense_Mutation p.R200H 0.11 tolerated(0.1) unknown(0) TCGA-AC-A7VC-01 12 133151012 133151012 C T FBRSL1 Silent p.S564S 0.25 TCGA-AC-A7VC-01 12 14929167 14929167 C G H2AFJ 3'UTR 0.06 TCGA-AC-A7VC-01 12 49440153 49440153 C T KMT2D Nonsense_Mutation p.W1491* 0.45 TCGA-AC-A7VC-01 12 94673376 94673376 A C PLXNC1 Missense_Mutation p.L1242F 0.36 tolerated(0.18) benign(0.156) TCGA-AC-A7VC-01 13 48947560 48947560 C T RB1 Nonsense_Mutation p.Q383* 0.37 TCGA-AC-A7VC-01 13 95673420 95673426 ACTTCAC - ABCC4 3'UTR 0.24 TCGA-AC-A7VC-01 14 93537458 93537458 G A ITPK1 Intron 0.44 TCGA-AC-A7VC-01 16 22337237 22337237 G T POLR3E Missense_Mutation p.V502L 0.46 tolerated(0.49) benign(0.003) TCGA-AC-A7VC-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.81 deleterious(0.03) probably_damaging(1) TCGA-AC-A7VC-01 18 6928459 6928459 G A LINC00668 RNA 0.51 TCGA-AC-A7VC-01 19 51670767 51670767 C T CTD-3187F8.14 Intron 0.76 TCGA-AC-A7VC-01 19 5641913 5641913 G A SAFB Missense_Mutation p.E168K 0.30 tolerated(0.39) benign(0.241) TCGA-AC-A7VC-01 1 180794051 180794051 G A XPR1 Missense_Mutation p.S309N 0.39 tolerated(1) benign(0.001) TCGA-AC-A7VC-01 1 203020889 203020889 C T PPFIA4 5'UTR 0.21 TCGA-AC-A7VC-01 1 24122453 24122453 C T GALE Missense_Mutation p.G345S 0.05 tolerated(0.53) benign(0) TCGA-AC-A7VC-01 20 48503390 48503390 C T SLC9A8 Silent p.D547D 0.38 TCGA-AC-A7VC-01 2 242202241 242202241 C A HDLBP Missense_Mutation p.G112V 0.25 deleterious(0) probably_damaging(0.943) TCGA-AC-A7VC-01 3 132075547 132075547 T C ACPP Missense_Mutation p.M329T 0.33 deleterious(0) probably_damaging(1) TCGA-AC-A7VC-01 4 154197059 154197059 A G TRIM2 Missense_Mutation p.Y77C 0.43 deleterious(0) probably_damaging(0.997) TCGA-AC-A7VC-01 5 140475031 140475031 C T PCDHB2 Silent p.G219G 0.44 TCGA-AC-A7VC-01 6 84569567 84569567 G C CYB5R4 Silent p.G22G 0.40 TCGA-AC-A7VC-01 7 100608276 100608276 G A MUC3A Intron 0.36 TCGA-AC-A7VC-01 7 138768593 138768593 G A ZC3HAV1 Silent p.D210D 0.40 TCGA-AC-A7VC-01 8 114290925 114290925 C A CSMD3 Missense_Mutation p.G137V 0.48 deleterious(0) benign(0.314) TCGA-AC-A7VC-01 9 14086392 14086392 A T NFIB 3'Flank 0.11 TCGA-AC-A7VC-01 X 70339234 70339251 GGCCTTGAATGTAAAACA CAT MED12 In_Frame_Del p.A38_Q43delinsI 0.56 TCGA-AC-A8OP-01 10 108378002 108378002 G A SORCS1 Missense_Mutation p.S942F 0.15 deleterious(0.05) possibly_damaging(0.776) TCGA-AC-A8OP-01 10 112053942 112053942 G A SMNDC1 Missense_Mutation p.S228F 0.16 deleterious(0.03) possibly_damaging(0.598) TCGA-AC-A8OP-01 10 127344689 127344689 T G TEX36 Missense_Mutation p.Y114S 0.15 tolerated(0.43) benign(0.08) TCGA-AC-A8OP-01 10 128191325 128191325 A T C10orf90 Intron 0.15 TCGA-AC-A8OP-01 10 131639112 131639112 G A EBF3 Silent p.Y510Y 0.15 TCGA-AC-A8OP-01 10 27317853 27317853 C A ANKRD26 Missense_Mutation p.K1300N 0.21 tolerated(0.15) benign(0.014) TCGA-AC-A8OP-01 10 29811533 29811533 C A SVIL Missense_Mutation p.Q1065H 0.19 tolerated_low_confidence(0.19) benign(0.401) TCGA-AC-A8OP-01 10 37452085 37474951 10:37452085-37474951 - ANKRD30A large deletion p.X752_splice 0.12 TCGA-AC-A8OP-01 10 48389663 48389663 G A RBP3 Silent p.A405A 0.26 TCGA-AC-A8OP-01 10 49983767 49983767 G T WDFY4 Missense_Mutation p.G927C 0.16 tolerated(0.18) benign(0.01) TCGA-AC-A8OP-01 10 50040663 50040663 A G WDFY4 Missense_Mutation p.H2191R 0.16 tolerated(0.24) benign(0.006) TCGA-AC-A8OP-01 10 52005163 52005163 C G ASAH2 Missense_Mutation p.G60A 0.11 tolerated_low_confidence(0.82) benign(0.001) TCGA-AC-A8OP-01 10 62547875 62547875 C A CDK1 Missense_Mutation p.H126N 0.27 deleterious(0) probably_damaging(0.983) TCGA-AC-A8OP-01 10 75574776 75574776 C G CAMK2G Missense_Mutation p.Q556H 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AC-A8OP-01 10 8111502 8111503 - G GATA3 Frame_Shift_Ins p.N332Efs*21 0.26 TCGA-AC-A8OP-01 10 85967940 85967940 T C CDHR1 Missense_Mutation p.M325T 0.12 deleterious(0) benign(0.001) TCGA-AC-A8OP-01 10 98945288 98945288 G T SLIT1 Missense_Mutation p.H48Q 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-AC-A8OP-01 11 102585378 102585378 T G MMP8 Missense_Mutation p.N367H 0.19 tolerated(0.06) benign(0.178) TCGA-AC-A8OP-01 11 1266591 1266591 G A MUC5B Silent p.T2827T 0.31 TCGA-AC-A8OP-01 11 20448345 20448345 T A PRMT3 Silent p.I309I 0.14 TCGA-AC-A8OP-01 11 20448396 20448396 C T PRMT3 Silent p.I326I 0.12 TCGA-AC-A8OP-01 11 2151726 2151726 G A IGF2 3'Flank 0.21 TCGA-AC-A8OP-01 11 55321935 55321935 C A OR4C15 Silent p.S51S 0.14 TCGA-AC-A8OP-01 11 55659240 55659240 A - TRIM51 3'UTR 0.08 TCGA-AC-A8OP-01 11 56043230 56043230 T C OR5T1 Missense_Mutation p.L39P 0.17 deleterious(0) probably_damaging(0.933) TCGA-AC-A8OP-01 11 61160751 61160751 G A TMEM216 Missense_Mutation p.G28E 0.12 deleterious(0) probably_damaging(0.938) TCGA-AC-A8OP-01 11 65267658 65267658 T A MALAT1 RNA 0.23 TCGA-AC-A8OP-01 11 6661587 6661587 C T DCHS1 Missense_Mutation p.V420I 0.10 tolerated(1) benign(0.004) TCGA-AC-A8OP-01 11 9989952 9989952 G C SBF2 Missense_Mutation p.N512K 0.12 tolerated(0.29) benign(0.007) TCGA-AC-A8OP-01 12 10010143 10010143 C A CLEC2B Missense_Mutation p.W56L 0.37 deleterious(0) probably_damaging(0.998) TCGA-AC-A8OP-01 12 111099035 111099035 G A HVCN1 Silent p.P80P 0.24 TCGA-AC-A8OP-01 12 113303278 113303278 G A RPH3A Missense_Mutation p.R97H 0.23 tolerated(0.09) possibly_damaging(0.722) TCGA-AC-A8OP-01 12 116396746 116396746 T G MED13L 3'UTR 0.15 TCGA-AC-A8OP-01 12 130926837 130926837 C A RIMBP2 Missense_Mutation p.D337Y 0.25 deleterious(0) probably_damaging(0.95) TCGA-AC-A8OP-01 12 133780392 133780392 G T ZNF268 Missense_Mutation p.S707I 0.16 tolerated(0.19) benign(0.186) TCGA-AC-A8OP-01 12 27167216 27167216 G C TM7SF3 5'UTR 0.17 TCGA-AC-A8OP-01 12 49221904 49221904 G C CACNB3 3'UTR 0.23 TCGA-AC-A8OP-01 12 6436602 6436602 G A PLEKHG6 Missense_Mutation p.R618H 0.12 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-AC-A8OP-01 12 68717004 68717004 C G MDM1 Missense_Mutation p.S217T 0.11 deleterious(0) benign(0.381) TCGA-AC-A8OP-01 13 109779714 109779714 C T MYO16 Silent p.L1267L 0.18 TCGA-AC-A8OP-01 13 112725350 112725350 C T SOX1 3'UTR 0.16 TCGA-AC-A8OP-01 13 23906207 23906207 C A SACS Silent p.G3936G 0.23 TCGA-AC-A8OP-01 13 70549829 70549829 C G KLHL1 Missense_Mutation p.K201N 0.13 tolerated(0.08) possibly_damaging(0.811) TCGA-AC-A8OP-01 14 106054600 106054600 C T IGHA2 Missense_Mutation p.G45R 0.20 tolerated(0.09) possibly_damaging(0.754) TCGA-AC-A8OP-01 14 37892138 37892138 C T MIPOL1 Missense_Mutation p.L339F 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A8OP-01 14 50052742 50052742 G A RPS29 Silent p.L30L 0.14 TCGA-AC-A8OP-01 14 67525575 67525575 G A GPHN Intron 0.31 TCGA-AC-A8OP-01 15 31341645 31341645 A G TRPM1 Missense_Mutation p.L519P 0.35 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OP-01 15 42824776 42824776 G T SNAP23 3'UTR 0.13 TCGA-AC-A8OP-01 15 43653984 43653984 G A ZSCAN29 Nonsense_Mutation p.Q616* 0.18 TCGA-AC-A8OP-01 15 67074325 67074325 T C SMAD6 3'UTR 0.11 TCGA-AC-A8OP-01 15 91477754 91477754 G A UNC45A 5'Flank 0.23 TCGA-AC-A8OP-01 16 17211817 17211817 G A XYLT1 Missense_Mutation p.A748V 0.15 tolerated(0.2) probably_damaging(0.964) TCGA-AC-A8OP-01 16 2043253 2043253 C A SYNGR3 3'UTR 0.09 TCGA-AC-A8OP-01 16 20554233 20554233 C G ACSM2B Intron 0.17 TCGA-AC-A8OP-01 16 28846418 28846418 C T ATXN2L Silent p.L825L 0.15 TCGA-AC-A8OP-01 16 68023995 68023995 C T DPEP2 Missense_Mutation p.G317R 0.16 tolerated(0.15) benign(0.316) TCGA-AC-A8OP-01 16 68392493 68392493 A C SMPD3 3'UTR 0.19 TCGA-AC-A8OP-01 16 70695531 70695531 G A MTSS1L 3'UTR 0.25 TCGA-AC-A8OP-01 16 77756455 77756455 C A NUDT7 5'UTR 0.31 TCGA-AC-A8OP-01 16 85701835 85701835 G A GSE1 Missense_Mutation p.A1074T 0.20 tolerated(0.58) benign(0.029) TCGA-AC-A8OP-01 17 16012121 16012121 C T NCOR1 Missense_Mutation p.E721K 0.36 possibly_damaging(0.784) TCGA-AC-A8OP-01 17 16725793 16725793 C T AC022596.6 RNA 0.18 TCGA-AC-A8OP-01 17 17699069 17699069 C G RAI1 Nonsense_Mutation p.S936* 0.69 TCGA-AC-A8OP-01 17 17699660 17699660 C G RAI1 Nonsense_Mutation p.S1133* 0.55 TCGA-AC-A8OP-01 17 17700443 17700443 C A RAI1 Missense_Mutation p.S1394Y 0.63 tolerated(0.06) benign(0.081) TCGA-AC-A8OP-01 17 18325495 18325495 G T AL353997.3 Intron 0.13 TCGA-AC-A8OP-01 17 18326004 18326004 G C AL353997.3 RNA 0.17 TCGA-AC-A8OP-01 17 18326028 18326028 G C AL353997.3 RNA 0.18 TCGA-AC-A8OP-01 17 20805604 20805604 C G RP11-344E13.3 RNA 0.06 TCGA-AC-A8OP-01 17 26864482 26864482 G A FOXN1 3'UTR 0.22 TCGA-AC-A8OP-01 17 27425455 27425455 G C MYO18A Missense_Mutation p.I1263M 0.15 deleterious(0.04) possibly_damaging(0.612) TCGA-AC-A8OP-01 17 37187588 37187588 C G CTD-2206N4.2 5'Flank 0.06 TCGA-AC-A8OP-01 17 39883365 39883365 G T HAP1 Missense_Mutation p.A436D 0.15 tolerated(0.06) probably_damaging(0.958) TCGA-AC-A8OP-01 17 40028081 40028081 T C ACLY Missense_Mutation p.D933G 0.12 deleterious(0.04) probably_damaging(0.988) TCGA-AC-A8OP-01 17 46626539 46626539 T C HOXB3 3'UTR 0.14 TCGA-AC-A8OP-01 17 47903488 47903488 G C KAT7 Missense_Mutation p.G536A 0.10 tolerated(0.07) benign(0.033) TCGA-AC-A8OP-01 17 56385982 56385982 G A BZRAP1 Missense_Mutation p.R1551C 0.08 tolerated(0.11) benign(0.002) TCGA-AC-A8OP-01 17 56573382 56573382 G A MTMR4 Silent p.T707T 0.08 TCGA-AC-A8OP-01 17 63198190 63198190 G C RGS9 Missense_Mutation p.E352D 0.06 tolerated(0.1) benign(0.004) TCGA-AC-A8OP-01 17 66933127 66933127 C T ABCA8 Missense_Mutation p.G144E 0.10 tolerated(0.24) benign(0.016) TCGA-AC-A8OP-01 17 72863050 72863050 C T FDXR Silent p.A85A 0.08 TCGA-AC-A8OP-01 17 73821558 73821558 C A UNK 3'UTR 0.07 TCGA-AC-A8OP-01 17 74023298 74023298 T C EVPL 5'UTR 0.06 TCGA-AC-A8OP-01 17 80020779 80020779 C G DUS1L Missense_Mutation p.K156N 0.11 deleterious(0) possibly_damaging(0.846) TCGA-AC-A8OP-01 17 80706775 80706775 C A FN3K Missense_Mutation p.H171Q 0.11 tolerated(1) benign(0.004) TCGA-AC-A8OP-01 17 8377996 8377997 - T MYH10 3'UTR 0.16 TCGA-AC-A8OP-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.06 TCGA-AC-A8OP-01 18 55983213 55983213 G T NEDD4L Splice_Site p.X100_splice 0.22 TCGA-AC-A8OP-01 18 72999371 72999371 C T TSHZ1 Missense_Mutation p.A625V 0.32 tolerated(0.36) benign(0) TCGA-AC-A8OP-01 19 15302344 15302344 C T NOTCH3 Silent p.E309E 0.10 TCGA-AC-A8OP-01 19 15918353 15918353 G A OR10H1 Silent p.H165H 0.10 TCGA-AC-A8OP-01 19 18344105 18344105 G A PDE4C 5'UTR 0.10 TCGA-AC-A8OP-01 19 20118035 20118035 T C ZNF682 Silent p.Q92Q 0.29 TCGA-AC-A8OP-01 19 20591776 20591776 C G ZNF826P Intron 0.12 TCGA-AC-A8OP-01 19 3496672 3496672 G A DOHH Silent p.F47F 0.13 TCGA-AC-A8OP-01 19 37619601 37619601 C T ZNF420 Missense_Mutation p.R570C 0.12 tolerated(0.24) probably_damaging(0.911) TCGA-AC-A8OP-01 19 37904551 37904551 G A ZNF569 Nonsense_Mutation p.R337* 0.18 TCGA-AC-A8OP-01 19 38896020 38896020 C G FAM98C Missense_Mutation p.L198V 0.10 tolerated(1) possibly_damaging(0.578) TCGA-AC-A8OP-01 19 39232515 39232515 C T CAPN12 Silent p.V154V 0.13 TCGA-AC-A8OP-01 19 41072084 41072084 A C SPTBN4 Missense_Mutation p.Q2052P 0.16 deleterious(0) probably_damaging(0.996) TCGA-AC-A8OP-01 19 45537719 45537719 C T RELB Silent p.G429G 0.11 TCGA-AC-A8OP-01 19 47991642 47991642 T A NAPA Missense_Mutation p.K264M 0.16 deleterious(0) probably_damaging(0.917) TCGA-AC-A8OP-01 19 49558170 49558170 A G CGB7 Silent p.A37A 0.17 TCGA-AC-A8OP-01 19 50412945 50412945 T G NUP62 Silent p.G40G 0.07 TCGA-AC-A8OP-01 19 51525771 51525771 G T KLK11 3'UTR 0.16 TCGA-AC-A8OP-01 19 5215364 5215364 C A PTPRS Silent p.P1418P 0.15 TCGA-AC-A8OP-01 19 54313881 54313881 G A NLRP12 Silent p.P344P 0.45 TCGA-AC-A8OP-01 19 55435154 55435154 T A NLRP7 Missense_Mutation p.N1023I 0.16 deleterious(0.01) benign(0.035) TCGA-AC-A8OP-01 19 6413662 6413662 C T KHSRP 3'UTR 0.30 TCGA-AC-A8OP-01 19 8130982 8130982 G A FBN3 Missense_Mutation p.R2751C 0.28 tolerated(0.07) benign(0.117) TCGA-AC-A8OP-01 1 1017512 1017512 A T C1orf159 3'UTR 0.36 TCGA-AC-A8OP-01 1 109716459 109716459 G C KIAA1324 Missense_Mutation p.E318Q 0.17 tolerated(0.26) benign(0.034) TCGA-AC-A8OP-01 1 115428160 115428161 AC - SYCP1 Frame_Shift_Del p.Q306Efs*2 0.12 TCGA-AC-A8OP-01 1 120612211 120612211 G C NOTCH2 5'UTR 0.04 TCGA-AC-A8OP-01 1 150596959 150596959 G A ENSA Intron 0.12 TCGA-AC-A8OP-01 1 150969795 150969795 G T FAM63A Missense_Mutation p.P508T 0.12 tolerated(0.07) benign(0.015) TCGA-AC-A8OP-01 1 151506478 151506478 G C CGN Missense_Mutation p.A924P 0.14 tolerated(0.17) benign(0.305) TCGA-AC-A8OP-01 1 152732863 152732863 C G KPRP Missense_Mutation p.R267G 0.09 deleterious(0) probably_damaging(0.932) TCGA-AC-A8OP-01 1 161495402 161495402 G A HSPA6 Silent p.P318P 0.10 TCGA-AC-A8OP-01 1 17266569 17266569 G A CROCC Missense_Mutation p.A597T 0.27 benign(0.03) TCGA-AC-A8OP-01 1 175097239 175097239 C G TNN Silent p.V1039V 0.08 TCGA-AC-A8OP-01 1 181769951 181769951 G A CACNA1E 3'Flank 0.30 TCGA-AC-A8OP-01 1 186908285 186908285 A G PLA2G4A Missense_Mutation p.K281E 0.11 tolerated(0.72) benign(0.016) TCGA-AC-A8OP-01 1 203740554 203740554 C T LAX1 Nonsense_Mutation p.Q87* 0.09 TCGA-AC-A8OP-01 1 223395458 223395458 C T SUSD4 3'UTR 0.51 TCGA-AC-A8OP-01 1 228504497 228504497 C T OBSCN Missense_Mutation p.A5415V 0.11 benign(0.053) TCGA-AC-A8OP-01 1 2411199 2411199 A C PLCH2 Missense_Mutation p.S73R 0.46 tolerated(0.29) benign(0.086) TCGA-AC-A8OP-01 1 27087894 27087903 GCCACCCAGT - ARID1A Frame_Shift_Del p.P728Afs*11 0.17 TCGA-AC-A8OP-01 1 63789535 63789535 G A FOXD3 Missense_Mutation p.G269E 0.31 deleterious(0.03) unknown(0) TCGA-AC-A8OP-01 1 95448770 95448770 G T ALG14 Nonsense_Mutation p.Y171* 0.17 TCGA-AC-A8OP-01 20 13509155 13509155 C T TASP1 Missense_Mutation p.A267T 0.25 deleterious(0.01) probably_damaging(0.955) TCGA-AC-A8OP-01 20 1457900 1457900 C A SIRPB2 Intron 0.16 TCGA-AC-A8OP-01 20 17922967 17922967 C T SNX5 3'UTR 0.26 TCGA-AC-A8OP-01 20 33298145 33298145 A C TP53INP2 3'UTR 0.15 TCGA-AC-A8OP-01 20 34618624 34618624 G A CNBD2 3'Flank 0.13 TCGA-AC-A8OP-01 20 61510680 61510680 C G DIDO1 Missense_Mutation p.D2210H 0.27 benign(0.002) TCGA-AC-A8OP-01 20 61944283 61944283 C T COL20A1 Silent p.H691H 0.33 TCGA-AC-A8OP-01 21 43803181 43803181 G A TMPRSS3 Missense_Mutation p.T248M 0.18 deleterious(0) probably_damaging(0.998) TCGA-AC-A8OP-01 22 17598144 17598144 G T CECR6 3'UTR 0.12 TCGA-AC-A8OP-01 22 23101691 23101691 C A IGLV2-14 Missense_Mutation p.S115R 0.24 tolerated_low_confidence(0.06) benign(0.254) TCGA-AC-A8OP-01 22 25293939 25293939 G T SGSM1 Missense_Mutation p.V730L 0.28 deleterious(0.02) benign(0.258) TCGA-AC-A8OP-01 22 29106013 29106013 A T CHEK2 Missense_Mutation p.I319N 0.13 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OP-01 22 36537571 36537571 G A APOL3 Missense_Mutation p.R296C 0.08 tolerated(0.08) probably_damaging(0.98) TCGA-AC-A8OP-01 22 37211254 37211255 - T PVALB Frame_Shift_Ins p.F30Vfs*14 0.26 TCGA-AC-A8OP-01 22 43996072 43996072 G T EFCAB6 Missense_Mutation p.P918H 0.17 deleterious(0) probably_damaging(0.928) TCGA-AC-A8OP-01 2 128479470 128479470 T C WDR33 Silent p.T537T 0.17 TCGA-AC-A8OP-01 2 170403181 170403181 C T FASTKD1 Silent p.V416V 0.09 TCGA-AC-A8OP-01 2 179453355 179453355 C A TTN Nonsense_Mutation p.E21033* 0.15 TCGA-AC-A8OP-01 2 215813318 215813318 A G ABCA12 Splice_Site p.X2368_splice 0.12 TCGA-AC-A8OP-01 2 228883750 228883750 C G SPHKAP Missense_Mutation p.S607T 0.13 tolerated(0.12) possibly_damaging(0.489) TCGA-AC-A8OP-01 2 234580863 234580863 C G UGT1A9 Missense_Mutation p.H95D 0.26 tolerated(1) benign(0.001) TCGA-AC-A8OP-01 2 240056067 240056067 C T HDAC4 Missense_Mutation p.G390S 0.11 tolerated(0.32) benign(0.033) TCGA-AC-A8OP-01 2 26750754 26750754 C T OTOF Missense_Mutation p.R58K 0.24 tolerated(0.9) benign(0.004) TCGA-AC-A8OP-01 2 27716803 27716803 T C FNDC4 Missense_Mutation p.S150G 0.20 tolerated(0.19) benign(0) TCGA-AC-A8OP-01 2 29295703 29295703 C T C2orf71 Silent p.P475P 0.33 TCGA-AC-A8OP-01 2 70438885 70438885 A G TIA1 3'UTR 0.20 TCGA-AC-A8OP-01 2 97372959 97372959 G A LMAN2L 3'UTR 0.18 TCGA-AC-A8OP-01 3 10861169 10861169 C T SLC6A11 Silent p.Y92Y 0.36 TCGA-AC-A8OP-01 3 110612203 110612203 G T RP11-553A10.1 Missense_Mutation p.P3T 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.685) TCGA-AC-A8OP-01 3 11598738 11598738 T C ATG7 3'UTR 0.17 TCGA-AC-A8OP-01 3 123038612 123038612 C T ADCY5 Missense_Mutation p.R722H 0.19 deleterious(0.03) possibly_damaging(0.846) TCGA-AC-A8OP-01 3 123452844 123452844 C T MYLK Silent p.P333P 0.17 TCGA-AC-A8OP-01 3 129268039 129268039 G A H1FOO Missense_Mutation p.A192T 0.18 tolerated(0.38) benign(0.033) TCGA-AC-A8OP-01 3 169664562 169664562 G T RP11-379K17.4 RNA 0.30 TCGA-AC-A8OP-01 3 182545949 182545949 G A ATP11B Silent p.Q62Q 0.12 TCGA-AC-A8OP-01 3 182841466 182841466 A C LAMP3 3'UTR 0.22 TCGA-AC-A8OP-01 3 194063306 194063306 G A CPN2 Silent p.T42T 0.56 TCGA-AC-A8OP-01 3 30046293 30046293 C A RBMS3 3'Flank 0.11 TCGA-AC-A8OP-01 3 40523387 40523387 G A ZNF619 Missense_Mutation p.V20I 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-AC-A8OP-01 3 45127560 45127560 C A CDCP1 Splice_Site p.X694_splice 0.10 TCGA-AC-A8OP-01 3 45153676 45153676 C T CDCP1 Missense_Mutation p.R185Q 0.08 deleterious(0.05) possibly_damaging(0.795) TCGA-AC-A8OP-01 3 47629245 47629245 T C SMARCC1 3'UTR 0.17 TCGA-AC-A8OP-01 3 47958025 47958025 G C MAP4 Missense_Mutation p.S431C 0.09 deleterious(0.01) possibly_damaging(0.827) TCGA-AC-A8OP-01 3 48788942 48788942 C T PRKAR2A 3'UTR 0.15 TCGA-AC-A8OP-01 3 64536600 64536600 C T ADAMTS9 Missense_Mutation p.E1613K 0.25 tolerated(0.87) benign(0.158) TCGA-AC-A8OP-01 3 98002015 98002015 G T OR5H2 Missense_Mutation p.R95M 0.15 deleterious(0.02) benign(0.004) TCGA-AC-A8OP-01 4 100341864 100341864 A C ADH7 Silent p.S237S 0.28 TCGA-AC-A8OP-01 4 13543913 13543913 G T NKX3-2 Missense_Mutation p.R236S 0.39 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OP-01 4 144359340 144359340 T G GAB1 Missense_Mutation p.L261R 0.10 deleterious(0) probably_damaging(0.998) TCGA-AC-A8OP-01 4 170057553 170057553 G C SH3RF1 Silent p.P328P 0.20 TCGA-AC-A8OP-01 5 134126186 134126186 A T DDX46 Missense_Mutation p.T524S 0.12 deleterious(0.03) possibly_damaging(0.773) TCGA-AC-A8OP-01 5 137206665 137206665 A C MYOT Missense_Mutation p.S109R 0.24 tolerated(0.23) benign(0.1) TCGA-AC-A8OP-01 5 137683762 137683762 C G FAM53C 3'UTR 0.15 TCGA-AC-A8OP-01 5 140070907 140070907 G T HARS 5'UTR 0.17 TCGA-AC-A8OP-01 5 140263146 140263146 C A PCDHA13 Silent p.G431G 0.21 TCGA-AC-A8OP-01 5 140762932 140762932 G A PCDHGA7 Missense_Mutation p.E156K 0.28 tolerated_low_confidence(0.19) benign(0.124) TCGA-AC-A8OP-01 5 141531629 141531629 C G NDFIP1 3'UTR 0.14 TCGA-AC-A8OP-01 5 150311133 150311133 C G ZNF300P1 RNA 0.16 TCGA-AC-A8OP-01 5 156946939 156946939 G A ADAM19 Missense_Mutation p.P170S 0.07 tolerated(0.28) possibly_damaging(0.495) TCGA-AC-A8OP-01 5 156946942 156946942 G A ADAM19 Missense_Mutation p.P169S 0.08 tolerated(0.16) benign(0.001) TCGA-AC-A8OP-01 5 157216435 157216435 T G CLINT1 Missense_Mutation p.L507F 0.19 deleterious(0.01) possibly_damaging(0.827) TCGA-AC-A8OP-01 5 177580489 177580490 - A NHP2 Intron 0.20 TCGA-AC-A8OP-01 5 38923328 38923329 - A OSMR Frame_Shift_Ins p.T617Nfs*35 0.11 TCGA-AC-A8OP-01 5 433019 433019 C T AHRR Missense_Mutation p.R379W 0.20 deleterious(0.02) probably_damaging(0.963) TCGA-AC-A8OP-01 5 60048470 60048470 T C ELOVL7 3'UTR 0.27 TCGA-AC-A8OP-01 5 61681422 61681422 C A KIF2A 3'UTR 0.12 TCGA-AC-A8OP-01 6 160328645 160328645 G T MAS1 Missense_Mutation p.A220S 0.17 tolerated(0.72) benign(0.016) TCGA-AC-A8OP-01 6 21596132 21596132 A T SOX4 Missense_Mutation p.E456V 0.20 deleterious(0) unknown(0) TCGA-AC-A8OP-01 6 27782248 27782248 C A HIST1H2AJ Missense_Mutation p.D91Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.865) TCGA-AC-A8OP-01 6 29797214 29797214 G A HLA-G Silent p.V213V 0.36 TCGA-AC-A8OP-01 6 350800 350800 C A DUSP22 Intron 0.06 TCGA-AC-A8OP-01 6 41652314 41652314 C T TFEB 3'UTR 0.21 TCGA-AC-A8OP-01 6 42579968 42579968 C T UBR2 Silent p.V308V 0.14 TCGA-AC-A8OP-01 6 87865319 87865319 G T ZNF292 Nonsense_Mutation p.E4* 0.22 TCGA-AC-A8OP-01 6 88767371 88767371 G T SPACA1 Missense_Mutation p.G103C 0.15 deleterious(0) probably_damaging(0.981) TCGA-AC-A8OP-01 6 90572629 90572629 C T CASP8AP2 RNA 0.18 TCGA-AC-A8OP-01 6 90604895 90604895 A - GJA10 Frame_Shift_Del p.I238Lfs*2 0.17 TCGA-AC-A8OP-01 7 121651176 121651176 C A PTPRZ1 Silent p.S692S 0.31 TCGA-AC-A8OP-01 7 141803214 141803214 C G MGAM Missense_Mutation p.S1824C 0.18 deleterious(0.02) benign(0.007) TCGA-AC-A8OP-01 7 142571287 142571287 G C TRPV6 Missense_Mutation p.L568V 0.07 deleterious(0.05) probably_damaging(1) TCGA-AC-A8OP-01 7 151882696 151882696 G A KMT2C Nonsense_Mutation p.Q1677* 0.09 TCGA-AC-A8OP-01 7 158494588 158494588 C T NCAPG2 Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.985) TCGA-AC-A8OP-01 7 26225459 26225459 A G NFE2L3 3'UTR 0.15 TCGA-AC-A8OP-01 7 44734136 44734136 G T OGDH Silent p.L543L 0.13 TCGA-AC-A8OP-01 7 44796659 44796659 G A ZMIZ2 Silent p.A93A 0.27 TCGA-AC-A8OP-01 7 48411995 48411995 G A ABCA13 Silent p.A3678A 0.16 TCGA-AC-A8OP-01 7 5998672 5998672 T G RSPH10B Missense_Mutation p.Y204S 0.09 deleterious(0) probably_damaging(1) TCGA-AC-A8OP-01 7 70255424 70255424 C G AUTS2 Silent p.P1074P 0.22 TCGA-AC-A8OP-01 7 80456788 80456788 A T SEMA3C Missense_Mutation p.S94T 0.15 tolerated(0.58) probably_damaging(0.962) TCGA-AC-A8OP-01 7 99145272 99145272 A C FAM200A Missense_Mutation p.I253M 0.43 tolerated(0.51) benign(0.005) TCGA-AC-A8OP-01 7 99172628 99172628 T C ZNF655 3'UTR 0.14 TCGA-AC-A8OP-01 8 23429816 23429816 C A SLC25A37 3'UTR 0.36 TCGA-AC-A8OP-01 8 30695500 30695500 G A TEX15 Missense_Mutation p.T2384M 0.55 deleterious(0.01) possibly_damaging(0.556) TCGA-AC-A8OP-01 8 32616844 32616844 C T NRG1 Silent p.V322V 0.24 TCGA-AC-A8OP-01 8 39463873 39463873 C T ADAM18 Silent p.L60L 0.16 TCGA-AC-A8OP-01 8 58197171 58197171 G A LINC00588 RNA 0.16 TCGA-AC-A8OP-01 8 71581405 71581405 C G LACTB2 5'Flank 0.10 TCGA-AC-A8OP-01 8 73480146 73480146 G A KCNB2 Silent p.T59T 0.30 TCGA-AC-A8OP-01 8 81882559 81882559 C T PAG1 3'UTR 0.33 TCGA-AC-A8OP-01 8 92972522 92972522 G A RUNX1T1 Missense_Mutation p.P599L 0.44 tolerated_low_confidence(0.07) unknown(0) TCGA-AC-A8OP-01 9 103339326 103339326 T C TMEFF1 3'UTR 0.28 TCGA-AC-A8OP-01 9 127214938 127214938 C T GPR144 Missense_Mutation p.R92W 0.12 deleterious(0) benign(0.002) TCGA-AC-A8OP-01 9 136030651 136030651 G A GBGT1 Silent p.S91S 0.11 TCGA-AC-A8OP-01 9 14085079 14085079 C T NFIB 3'Flank 0.36 TCGA-AC-A8OP-01 9 67968363 67968363 C A ANKRD20A1 Missense_Mutation p.S641Y 0.24 tolerated(1) possibly_damaging(0.831) TCGA-AC-A8OP-01 X 107845202 107845202 G A COL4A5 Missense_Mutation p.G710E 0.28 unknown(0) TCGA-AC-A8OP-01 X 118752595 118752595 G A SEPT6 3'UTR 0.23 TCGA-AC-A8OP-01 X 132092736 132092736 T G HS6ST2 5'UTR 0.17 TCGA-AC-A8OP-01 X 148076360 148076360 A T AFF2 3'UTR 0.12 TCGA-AC-A8OP-01 X 152226892 152226892 C G PNMA3 3'UTR 0.16 TCGA-AC-A8OP-01 X 152807150 152807150 G A ATP2B3 Missense_Mutation p.A144T 0.17 tolerated(0.2) benign(0.006) TCGA-AC-A8OP-01 X 153063864 153063864 T G SSR4 Missense_Mutation p.S166R 0.14 deleterious(0) benign(0.16) TCGA-AC-A8OP-01 X 155233510 155233510 C G IL9R Silent p.P141P 0.09 TCGA-AC-A8OP-01 X 17819824 17819824 C A RAI2 Nonsense_Mutation p.E103* 0.37 TCGA-AC-A8OP-01 X 19947972 19947972 A T CXorf23 Silent p.R650R 0.33 TCGA-AC-A8OP-01 X 23754068 23754068 G C ACOT9 Missense_Mutation p.P29R 0.17 tolerated_low_confidence(0.21) benign(0.043) TCGA-AC-A8OP-01 X 30326546 30326546 G A NR0B1 Missense_Mutation p.S312L 0.14 tolerated(0.21) benign(0.052) TCGA-AC-A8OP-01 X 5821245 5821245 C T NLGN4X Missense_Mutation p.E492K 0.09 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OP-01 X 64722162 64722162 T C ZC3H12B Silent p.I528I 0.11 TCGA-AC-A8OP-01 X 66766070 66766070 G A AR Missense_Mutation p.S361N 0.12 tolerated_low_confidence(0.27) benign(0.005) TCGA-AC-A8OP-01 X 71424858 71424858 A G ERCC6L 3'UTR 0.09 TCGA-AC-A8OP-01 X 77301022 77301022 G T ATP7A Missense_Mutation p.M1393I 0.17 deleterious(0) possibly_damaging(0.499) TCGA-AC-A8OP-01 X 77301023 77301023 G C ATP7A Missense_Mutation p.A1394P 0.16 deleterious(0) probably_damaging(0.955) TCGA-AC-A8OQ-01 10 103603283 103603283 C T KCNIP2 Missense_Mutation p.D15N 0.16 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-AC-A8OQ-01 10 23731152 23731152 G C OTUD1 3'UTR 0.03 TCGA-AC-A8OQ-01 10 33545302 33545302 C T NRP1 Silent p.A252A 0.10 TCGA-AC-A8OQ-01 10 7830123 7830123 T C ATP5C1 5'UTR 0.08 TCGA-AC-A8OQ-01 11 115111067 115111067 G T CADM1 Silent p.V66V 0.07 TCGA-AC-A8OQ-01 11 129742970 129742970 C T NFRKB Missense_Mutation p.V883I 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.867) TCGA-AC-A8OQ-01 11 30914503 30914503 A G DCDC1 Silent p.N1645N 0.28 TCGA-AC-A8OQ-01 11 34501265 34501265 G A ELF5 3'UTR 0.09 TCGA-AC-A8OQ-01 11 63987959 63987959 C T FERMT3 Missense_Mutation p.R459C 0.17 deleterious(0) probably_damaging(0.96) TCGA-AC-A8OQ-01 11 67077433 67077433 C T SSH3 Missense_Mutation p.T468M 0.20 deleterious(0.03) probably_damaging(0.943) TCGA-AC-A8OQ-01 12 22078957 22078957 C T ABCC9 Missense_Mutation p.V109M 0.15 tolerated(0.16) benign(0.01) TCGA-AC-A8OQ-01 12 54117525 54117525 C T CALCOCO1 Missense_Mutation p.R101Q 0.11 tolerated(0.06) probably_damaging(0.981) TCGA-AC-A8OQ-01 13 109661331 109661331 G T MYO16 Missense_Mutation p.E821D 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-AC-A8OQ-01 13 80911165 80911165 A G SPRY2 Missense_Mutation p.F226L 0.07 deleterious(0) probably_damaging(0.982) TCGA-AC-A8OQ-01 14 106235584 106235584 G A IGHG3 Missense_Mutation p.P375L 0.14 tolerated(0.05) benign(0.051) TCGA-AC-A8OQ-01 14 38724831 38724831 C A CLEC14A Nonsense_Mutation p.E133* 0.08 TCGA-AC-A8OQ-01 14 64692907 64692907 A T SYNE2 3'UTR 0.13 TCGA-AC-A8OQ-01 14 65453688 65453688 C T FNTB Missense_Mutation p.S6F 0.09 deleterious_low_confidence(0) benign(0.052) TCGA-AC-A8OQ-01 15 27222184 27222184 C T GABRG3 Missense_Mutation p.S30L 0.12 tolerated(0.69) benign(0) TCGA-AC-A8OQ-01 15 42436702 42436702 C T PLA2G4F Missense_Mutation p.G641S 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-AC-A8OQ-01 15 60792136 60792136 T C RORA Silent p.Q487Q 0.06 TCGA-AC-A8OQ-01 15 64048787 64048787 G A HERC1 Missense_Mutation p.S461L 0.08 possibly_damaging(0.734) TCGA-AC-A8OQ-01 15 91474407 91474407 G A HDDC3 3'UTR 0.16 TCGA-AC-A8OQ-01 16 21157362 21157362 C T DNAH3 Silent p.Q55Q 0.10 TCGA-AC-A8OQ-01 16 23713587 23713587 G C ERN2 Missense_Mutation p.H411Q 0.15 deleterious(0) probably_damaging(1) TCGA-AC-A8OQ-01 16 65038624 65038624 C T CDH11 Missense_Mutation p.R50H 0.10 deleterious(0) possibly_damaging(0.765) TCGA-AC-A8OQ-01 16 76556039 76556039 G A CNTNAP4 Silent p.R807R 0.09 TCGA-AC-A8OQ-01 16 81922834 81922834 G T PLCG2 Missense_Mutation p.D275Y 0.13 deleterious(0.02) benign(0.29) TCGA-AC-A8OQ-01 16 89334350 89334350 C G ANKRD11 3'UTR 0.08 TCGA-AC-A8OQ-01 17 16640904 16640904 C T CCDC144A Intron 0.12 TCGA-AC-A8OQ-01 17 17719293 17719293 G T SREBF1 Nonsense_Mutation p.S785* 0.10 TCGA-AC-A8OQ-01 17 33801971 33801971 A C SLFN12L Missense_Mutation p.C580G 0.06 deleterious_low_confidence(0) unknown(0) TCGA-AC-A8OQ-01 17 34431254 34431254 G - CCL4 5'UTR 0.09 TCGA-AC-A8OQ-01 17 36997562 36997562 G A C17orf98 Silent p.R27R 0.06 TCGA-AC-A8OQ-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.40 TCGA-AC-A8OQ-01 18 52892537 52892537 C G TCF4 3'Flank 0.06 TCGA-AC-A8OQ-01 19 19371724 19371724 G C HAPLN4 Missense_Mutation p.L128V 0.09 tolerated(0.08) benign(0.416) TCGA-AC-A8OQ-01 19 2040109 2040109 C T MKNK2 Intron 0.10 TCGA-AC-A8OQ-01 19 33263682 33263682 G A TDRD12 Missense_Mutation p.D297N 0.04 tolerated(0.1) benign(0.287) TCGA-AC-A8OQ-01 19 3595376 3595376 A - TBXA2R Intron 0.25 TCGA-AC-A8OQ-01 19 39221123 39221123 C G CAPN12 3'Flank 0.04 TCGA-AC-A8OQ-01 19 39406119 39406119 C T SARS2 3'Flank 0.11 TCGA-AC-A8OQ-01 19 49183847 49183847 G A RN7SL345P 5'Flank 0.17 TCGA-AC-A8OQ-01 1 100964501 100964501 C T CDC14A Missense_Mutation p.R480W 0.13 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-AC-A8OQ-01 1 11106774 11106774 T G MASP2 Missense_Mutation p.K84T 0.13 tolerated(0.22) benign(0.039) TCGA-AC-A8OQ-01 1 1385946 1385946 G A ATAD3C 5'UTR 0.12 TCGA-AC-A8OQ-01 1 1572836 1572836 C T CDK11B Missense_Mutation p.V505M 0.10 unknown(0) TCGA-AC-A8OQ-01 1 169562881 169562881 G A SELP Missense_Mutation p.T790M 0.19 tolerated(0.11) benign(0.206) TCGA-AC-A8OQ-01 1 201858733 201858733 C T SHISA4 Silent p.C78C 0.10 TCGA-AC-A8OQ-01 1 204923477 204923477 C T NFASC Missense_Mutation p.T126M 0.12 deleterious(0) probably_damaging(1) TCGA-AC-A8OQ-01 1 205036243 205036243 G A CNTN2 Missense_Mutation p.E664K 0.09 deleterious(0.01) probably_damaging(1) TCGA-AC-A8OQ-01 1 216251506 216251506 C A USH2A Missense_Mutation p.V1833L 0.09 benign(0.107) TCGA-AC-A8OQ-01 1 247263806 247263806 T C ZNF669 Missense_Mutation p.K422R 0.10 tolerated(0.26) benign(0.001) TCGA-AC-A8OQ-01 1 28975131 28975131 A T RNU11 RNA 0.14 TCGA-AC-A8OQ-01 1 36933249 36933249 C T CSF3R Missense_Mutation p.G623E 0.12 tolerated(1) benign(0.003) TCGA-AC-A8OQ-01 1 70300507 70300507 A T LRRC7 Missense_Mutation p.Y144F 0.04 tolerated(0.39) probably_damaging(0.978) TCGA-AC-A8OQ-01 1 8075279 8075279 T C ERRFI1 Intron 0.22 TCGA-AC-A8OQ-01 20 22563240 22563240 G A FOXA2 Missense_Mutation p.R214C 0.05 deleterious(0) probably_damaging(1) TCGA-AC-A8OQ-01 20 33328536 33328536 C T NCOA6 Missense_Mutation p.G1842R 0.09 probably_damaging(0.972) TCGA-AC-A8OQ-01 20 43938243 43938243 C T RBPJL Silent p.G56G 0.09 TCGA-AC-A8OQ-01 20 47704639 47704639 G T CSE1L Missense_Mutation p.S606I 0.08 deleterious(0.04) possibly_damaging(0.836) TCGA-AC-A8OQ-01 20 58495511 58495511 G A SYCP2 Missense_Mutation p.S67L 0.09 deleterious(0) possibly_damaging(0.892) TCGA-AC-A8OQ-01 20 60913523 60913523 C T LAMA5 Splice_Site p.X540_splice 0.06 TCGA-AC-A8OQ-01 21 26802304 26802304 G T LINC00158 RNA 0.18 TCGA-AC-A8OQ-01 21 34106417 34106417 C T PAXBP1 3'UTR 0.07 TCGA-AC-A8OQ-01 21 47552257 47552257 G A COL6A2 Missense_Mutation p.V951I 0.20 tolerated(1) benign(0.227) TCGA-AC-A8OQ-01 22 18766356 18766356 C T GGT3P RNA 0.12 TCGA-AC-A8OQ-01 22 38245490 38245490 G T EIF3L Splice_Site p.X11_splice 0.10 TCGA-AC-A8OQ-01 22 38611315 38611315 T C MAFF 3'UTR 0.05 TCGA-AC-A8OQ-01 22 38612472 38612472 G C MAFF 3'UTR 0.08 TCGA-AC-A8OQ-01 22 44495948 44495948 G A PARVB Missense_Mutation p.R106H 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-AC-A8OQ-01 22 46658536 46658536 G A PKDREJ Silent p.G228G 0.15 TCGA-AC-A8OQ-01 22 46762314 46762314 C T CELSR1 Missense_Mutation p.E2757K 0.08 tolerated(0.09) probably_damaging(0.956) TCGA-AC-A8OQ-01 2 106510117 106510117 G A NCK2 3'UTR 0.07 TCGA-AC-A8OQ-01 2 107007773 107007773 A T PLGLA RNA 0.09 TCGA-AC-A8OQ-01 2 125521282 125521282 C A CNTNAP5 Missense_Mutation p.D755E 0.06 tolerated(1) benign(0.047) TCGA-AC-A8OQ-01 2 141283525 141283525 C G LRP1B Silent p.V2638V 0.06 TCGA-AC-A8OQ-01 2 28117484 28117484 G A BRE Missense_Mutation p.V21M 0.08 deleterious(0.04) possibly_damaging(0.61) TCGA-AC-A8OQ-01 2 32466131 32466131 T A NLRC4 Missense_Mutation p.K774M 0.13 deleterious(0.02) possibly_damaging(0.739) TCGA-AC-A8OQ-01 2 44126646 44126646 C T LRPPRC Missense_Mutation p.R1223K 0.09 tolerated(0.05) benign(0.144) TCGA-AC-A8OQ-01 2 74041031 74041031 C T C2orf78 Silent p.V175V 0.23 TCGA-AC-A8OQ-01 2 9545025 9545025 A T ITGB1BP1 3'UTR 0.04 TCGA-AC-A8OQ-01 2 95843242 95843242 C T ZNF2 Silent p.F16F 0.13 TCGA-AC-A8OQ-01 2 95945746 95945746 G A PROM2 Splice_Site p.X476_splice 0.08 TCGA-AC-A8OQ-01 2 98319129 98319129 T C LINC01125 Intron 0.08 TCGA-AC-A8OQ-01 2 99861845 99861845 G A LYG2 Silent p.V87V 0.11 TCGA-AC-A8OQ-01 3 108812292 108812292 G T MORC1 Missense_Mutation p.A227D 0.36 tolerated(0.06) benign(0.139) TCGA-AC-A8OQ-01 3 109056418 109056418 T G DPPA4 5'UTR 0.08 TCGA-AC-A8OQ-01 3 142151593 142151593 C T XRN1 Missense_Mutation p.R73H 0.06 deleterious(0) benign(0.189) TCGA-AC-A8OQ-01 3 167086265 167086265 C G ZBBX Missense_Mutation p.E56Q 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-AC-A8OQ-01 3 44700834 44700834 G A ZNF35 Missense_Mutation p.V327I 0.20 tolerated(0.91) possibly_damaging(0.517) TCGA-AC-A8OQ-01 4 120181076 120181076 G T USP53 Missense_Mutation p.C224F 0.12 deleterious(0) probably_damaging(0.988) TCGA-AC-A8OQ-01 4 126412466 126412466 C T FAT4 Missense_Mutation p.A4830V 0.12 probably_damaging(0.994) TCGA-AC-A8OQ-01 4 128703688 128703695 CGACCATC GTACCAG HSPA4L 5'UTR 0.22 TCGA-AC-A8OQ-01 4 174243383 174243383 G A GALNT7 3'UTR 0.09 TCGA-AC-A8OQ-01 4 178911753 178911753 C G LINC01098 3'UTR 0.10 TCGA-AC-A8OQ-01 4 20600016 20600016 C G SLIT2 Nonsense_Mutation p.Y1230* 0.23 TCGA-AC-A8OQ-01 4 52861065 52861065 C T LRRC66 Missense_Mutation p.G708E 0.43 deleterious(0) probably_damaging(1) TCGA-AC-A8OQ-01 4 54256020 54256020 G A FIP1L1 Missense_Mutation p.G126E 0.15 deleterious(0) benign(0.184) TCGA-AC-A8OQ-01 4 55139849 55139851 AAG - PDGFRA In_Frame_Del p.K504del 0.23 TCGA-AC-A8OQ-01 4 72434486 72434486 T C SLC4A4 3'UTR 0.07 TCGA-AC-A8OQ-01 5 142603024 142603024 T C ARHGAP26 3'UTR 0.27 TCGA-AC-A8OQ-01 5 176917553 176917553 C G PDLIM7 Intron 0.28 TCGA-AC-A8OQ-01 5 66459887 66459887 C T MAST4 Missense_Mutation p.A1627V 0.21 benign(0.005) TCGA-AC-A8OQ-01 6 101073115 101073115 C T ASCC3 Missense_Mutation p.A1580T 0.10 deleterious(0.01) possibly_damaging(0.889) TCGA-AC-A8OQ-01 6 125146122 125146122 G A NKAIN2 3'UTR 0.09 TCGA-AC-A8OQ-01 6 128150798 128150798 C A THEMIS Missense_Mutation p.D178Y 0.38 deleterious(0) probably_damaging(1) TCGA-AC-A8OQ-01 6 138601154 138601154 G T KIAA1244 Missense_Mutation p.V772L 0.39 deleterious(0.02) benign(0.003) TCGA-AC-A8OQ-01 6 144509256 144509256 G T STX11 3'UTR 0.32 TCGA-AC-A8OQ-01 6 154360483 154360483 C T OPRM1 Intron 0.17 TCGA-AC-A8OQ-01 6 160679687 160679687 G A SLC22A2 Missense_Mutation p.P35S 0.12 tolerated(0.52) possibly_damaging(0.45) TCGA-AC-A8OQ-01 6 21596343 21596343 C A SOX4 3'UTR 0.21 TCGA-AC-A8OQ-01 6 87971593 87971593 G A ZNF292 3'UTR 0.15 TCGA-AC-A8OQ-01 7 103629803 103629804 - GCCGCC RELN 5'UTR 0.47 TCGA-AC-A8OQ-01 7 123508597 123508597 T C HYAL4 Silent p.F90F 0.07 TCGA-AC-A8OQ-01 7 126173840 126173840 G T GRM8 Silent p.V532V 0.10 TCGA-AC-A8OQ-01 7 148801229 148801229 G T ZNF425 Missense_Mutation p.D578E 0.11 tolerated(0.78) benign(0.002) TCGA-AC-A8OQ-01 7 5416518 5416518 G A TNRC18 Silent p.G856G 0.13 TCGA-AC-A8OQ-01 7 73084384 73084384 G A VPS37D Silent p.A115A 0.08 TCGA-AC-A8OQ-01 7 73818851 73818852 AC - CLIP2 3'UTR 0.08 TCGA-AC-A8OQ-01 7 90837458 90837458 A - CDK14 3'UTR 0.11 TCGA-AC-A8OQ-01 8 105405210 105405210 T A DPYS Silent p.S415S 0.08 TCGA-AC-A8OQ-01 8 114448960 114448960 T G CSMD3 Missense_Mutation p.S42R 0.10 tolerated_low_confidence(0.19) benign(0.003) TCGA-AC-A8OQ-01 8 39009045 39009045 A G ADAM32 Missense_Mutation p.D168G 0.28 tolerated(0.7) benign(0.037) TCGA-AC-A8OQ-01 9 128729137 128729137 C T PBX3 3'UTR 0.21 TCGA-AC-A8OQ-01 9 132584973 132584973 C T TOR1A Missense_Mutation p.V111I 0.17 tolerated(0.09) possibly_damaging(0.47) TCGA-AC-A8OQ-01 9 136344142 136344142 C A SLC2A6 Missense_Mutation p.D14Y 0.20 deleterious(0.01) benign(0.021) TCGA-AC-A8OQ-01 9 138586165 138586165 C A SOHLH1 Intron 0.22 TCGA-AC-A8OQ-01 9 139911463 139911463 G A ABCA2 Silent p.D889D 0.09 TCGA-AC-A8OQ-01 9 140138058 140138058 A C FAM166A 3'UTR 0.14 TCGA-AC-A8OQ-01 9 21385028 21385028 C T IFNA2 Missense_Mutation p.E101K 0.09 tolerated(0.51) benign(0.041) TCGA-AC-A8OQ-01 9 27950281 27950281 T C LINGO2 Missense_Mutation p.N130S 0.10 tolerated(0.12) possibly_damaging(0.458) TCGA-AC-A8OQ-01 9 5233728 5233728 C G INSL4 Missense_Mutation p.P91A 0.26 tolerated(0.2) benign(0.029) TCGA-AC-A8OQ-01 9 96418259 96418259 C T PHF2 Silent p.F332F 0.24 TCGA-AC-A8OQ-01 X 119738069 119738069 C T MCTS1 5'Flank 0.09 TCGA-AC-A8OQ-01 X 144911066 144911066 C T TMEM257 3'UTR 0.07 TCGA-AC-A8OQ-01 X 53117032 53117032 G T TSPYL2 Missense_Mutation p.G665W 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-AC-A8OQ-01 X 54159242 54159242 G C FAM120C Missense_Mutation p.P649A 0.15 tolerated(0.09) probably_damaging(0.942) TCGA-AC-A8OQ-01 X 54263387 54263387 G A WNK3 Nonsense_Mutation p.Q1538* 0.05 TCGA-AC-A8OQ-01 X 63409400 63409400 A G AMER1 3'UTR 0.21 TCGA-AC-A8OQ-01 X 64726114 64726114 A C ZC3H12B 3'UTR 0.24 TCGA-AC-A8OQ-01 X 69672554 69672554 C T DLG3 Intron 0.08 TCGA-AC-A8OQ-01 X 73043463 73043463 C T XIST RNA 0.12 TCGA-AC-A8OQ-01 X 84606353 84606353 T C POF1B Intron 0.09 TCGA-AC-A8OR-01 11 88241259 88241262 AAAG - GRM5 3'UTR 0.41 TCGA-AC-A8OR-01 12 48370884 48370884 C T COL2A1 Splice_Site p.X1109_splice 0.15 TCGA-AC-A8OR-01 13 33859740 33859740 G T STARD13 Silent p.G12G 0.25 TCGA-AC-A8OR-01 15 51828651 51828651 T A DMXL2 Missense_Mutation p.T676S 0.24 tolerated(0.24) probably_damaging(0.998) TCGA-AC-A8OR-01 16 57286083 57286083 A G ARL2BP Silent p.K132K 0.06 TCGA-AC-A8OR-01 17 4936146 4936146 C T SLC52A1 3'UTR 0.11 TCGA-AC-A8OR-01 17 73322068 73322068 T A GRB2 Silent p.A70A 0.10 TCGA-AC-A8OR-01 19 13211728 13211728 C T LYL1 Silent p.P86P 0.38 TCGA-AC-A8OR-01 19 15224744 15224744 G T SYDE1 Missense_Mutation p.E726D 0.23 deleterious(0) probably_damaging(0.997) TCGA-AC-A8OR-01 19 18576348 18576348 G T ELL Missense_Mutation p.Q115K 0.40 deleterious(0) probably_damaging(0.965) TCGA-AC-A8OR-01 19 4247126 4247126 G A CCDC94 5'UTR 0.32 TCGA-AC-A8OR-01 19 49633670 49633670 C T PPFIA3 Silent p.S231S 0.27 TCGA-AC-A8OR-01 1 120166483 120166483 G T ZNF697 Silent p.R161R 0.33 TCGA-AC-A8OR-01 1 162536044 162536044 A G UAP1 Silent p.Q62Q 0.37 TCGA-AC-A8OR-01 1 18153065 18153065 G C ACTL8 3'UTR 0.17 TCGA-AC-A8OR-01 1 29602098 29602098 G A PTPRU Missense_Mutation p.G428D 0.15 tolerated(0.12) benign(0.331) TCGA-AC-A8OR-01 1 62910813 62910813 A G USP1 Missense_Mutation p.Y321C 0.17 tolerated(0.19) benign(0) TCGA-AC-A8OR-01 1 89846056 89846056 T C GBP6 Missense_Mutation p.L246P 0.23 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OR-01 22 18778700 18778700 G A GGT3P RNA 0.10 TCGA-AC-A8OR-01 2 210837995 210837995 G T UNC80 Splice_Site p.X2797_splice 0.40 TCGA-AC-A8OR-01 2 39187702 39187702 C T ARHGEF33 Silent p.A752A 0.62 TCGA-AC-A8OR-01 3 129695883 129695883 C T TRH Missense_Mutation p.R185C 0.37 deleterious(0) probably_damaging(0.997) TCGA-AC-A8OR-01 3 52397012 52397012 C T DNAH1 Missense_Mutation p.A1699V 0.41 probably_damaging(0.927) TCGA-AC-A8OR-01 3 9483357 9483361 TATAA - SETD5 Frame_Shift_Del p.I298Rfs*13 0.45 TCGA-AC-A8OR-01 4 1016137 1016137 C T FGFRL1 Missense_Mutation p.R76C 0.35 deleterious(0) probably_damaging(1) TCGA-AC-A8OR-01 4 38690509 38690509 C A KLF3 Missense_Mutation p.L121M 0.08 tolerated(0.29) benign(0.023) TCGA-AC-A8OR-01 4 38829065 38829065 T A TLR6 Missense_Mutation p.N677I 0.48 deleterious(0) probably_damaging(0.922) TCGA-AC-A8OR-01 4 55598098 55598098 C T KIT Silent p.D765D 0.10 TCGA-AC-A8OR-01 5 74962690 74962690 C G ANKDD1B Missense_Mutation p.T422S 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-AC-A8OR-01 5 76003339 76003340 - A IQGAP2 3'UTR 0.10 TCGA-AC-A8OR-01 6 169642042 169642042 C T THBS2 Missense_Mutation p.A236T 0.24 tolerated_low_confidence(0.67) benign(0.003) TCGA-AC-A8OR-01 7 28993497 28993497 C T AC005013.5 5'Flank 0.44 TCGA-AC-A8OR-01 8 133900482 133900482 A G TG Silent p.R810R 0.57 TCGA-AC-A8OR-01 8 145170864 145170864 G A KIAA1875 Silent p.R1538R 0.27 TCGA-AC-A8OR-01 X 15838360 15838360 G A ZRSR2 Silent p.L286L 0.41 TCGA-AC-A8OS-01 10 119307950 119307950 C A EMX2 3'UTR 0.15 TCGA-AC-A8OS-01 10 27692266 27692267 - A PTCHD3 Frame_Shift_Ins p.K411Ifs*48 0.25 TCGA-AC-A8OS-01 11 47593969 47593969 C T KBTBD4 3'UTR 0.16 TCGA-AC-A8OS-01 11 48346881 48346881 A G OR4C3 Missense_Mutation p.H130R 0.08 deleterious(0) probably_damaging(0.917) TCGA-AC-A8OS-01 11 59992462 59992462 C T MS4A4E Intron 0.18 TCGA-AC-A8OS-01 11 6953646 6953646 G A ZNF215 Missense_Mutation p.R48H 0.15 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OS-01 11 76877119 76877119 C G MYO7A Missense_Mutation p.R570G 0.16 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OS-01 12 131357629 131357629 G A RAN Missense_Mutation p.G68D 0.21 deleterious(0) probably_damaging(0.993) TCGA-AC-A8OS-01 12 14975933 14975933 C T C12orf60 Missense_Mutation p.H22Y 0.42 tolerated(0.23) benign(0.013) TCGA-AC-A8OS-01 12 27235248 27235248 C T C12orf71 Missense_Mutation p.V57I 0.09 tolerated(1) benign(0.001) TCGA-AC-A8OS-01 12 27235255 27235255 C G C12orf71 Silent p.L54L 0.09 TCGA-AC-A8OS-01 12 27235288 27235288 A G C12orf71 Silent p.D43D 0.09 TCGA-AC-A8OS-01 12 54473208 54473208 C T RP11-834C11.3 Intron 0.06 TCGA-AC-A8OS-01 13 21357105 21357105 A T XPO4 3'UTR 0.10 TCGA-AC-A8OS-01 13 52952320 52952320 G A THSD1 Silent p.P595P 0.20 TCGA-AC-A8OS-01 14 101138048 101138048 G A LINC00523 RNA 0.30 TCGA-AC-A8OS-01 14 20925263 20925263 C T APEX1 Missense_Mutation p.R185W 0.24 deleterious(0) probably_damaging(0.96) TCGA-AC-A8OS-01 14 21829090 21829090 C G SUPT16H Silent p.R657R 0.19 TCGA-AC-A8OS-01 14 64066336 64066336 G C WDR89 Missense_Mutation p.L109V 0.14 tolerated(1) benign(0.002) TCGA-AC-A8OS-01 14 71199683 71199683 G T MAP3K9 Silent p.S815S 0.15 TCGA-AC-A8OS-01 15 69730734 69730738 TAGAA - KIF23 Frame_Shift_Del p.E569* 0.21 TCGA-AC-A8OS-01 16 5037575 5037575 C T SEC14L5 Silent p.F27F 0.19 TCGA-AC-A8OS-01 16 68857304 68857304 C T CDH1 Nonsense_Mutation p.Q647* 0.33 TCGA-AC-A8OS-01 17 12016567 12016567 A T MAP2K4 Missense_Mutation p.I235F 0.21 deleterious(0) probably_damaging(0.999) TCGA-AC-A8OS-01 17 12016571 12016571 T C MAP2K4 Missense_Mutation p.L236P 0.23 deleterious(0) probably_damaging(1) TCGA-AC-A8OS-01 17 12016573 12016573 C T MAP2K4 Silent p.L237L 0.23 TCGA-AC-A8OS-01 17 40475334 40475334 C A STAT3 Missense_Mutation p.W564C 0.20 deleterious(0.02) possibly_damaging(0.598) TCGA-AC-A8OS-01 17 5436691 5436691 G A NLRP1 Silent p.S1022S 0.31 TCGA-AC-A8OS-01 19 1360779 1360779 G A MUM1 Missense_Mutation p.E288K 0.26 tolerated(0.3) possibly_damaging(0.801) TCGA-AC-A8OS-01 19 38314893 38314893 C T AC016582.2 RNA 0.24 TCGA-AC-A8OS-01 19 45971885 45971885 G A FOSB Missense_Mutation p.R14Q 0.17 deleterious(0.01) benign(0.238) TCGA-AC-A8OS-01 19 48342773 48342773 C T CRX Missense_Mutation p.S150L 0.18 tolerated(0.5) benign(0.008) TCGA-AC-A8OS-01 19 53762448 53762448 C T VN1R2 Silent p.L274L 0.14 TCGA-AC-A8OS-01 19 55658316 55658316 C T TNNT1 Intron 0.11 TCGA-AC-A8OS-01 19 814466 814466 A C LPPR3 Missense_Mutation p.F295V 0.19 deleterious(0) probably_damaging(0.962) TCGA-AC-A8OS-01 1 110022230 110022230 C T SYPL2 3'UTR 0.19 TCGA-AC-A8OS-01 1 16162112 16162112 G C RP11-169K16.9 RNA 0.32 TCGA-AC-A8OS-01 1 179561983 179561983 G T TDRD5 Splice_Site p.X78_splice 0.20 TCGA-AC-A8OS-01 1 213031341 213031341 T C FLVCR1 5'Flank 0.09 TCGA-AC-A8OS-01 1 21900165 21900165 C T ALPL Silent p.F290F 0.22 TCGA-AC-A8OS-01 1 231472069 231472069 C G EXOC8 Missense_Mutation p.E475Q 0.10 tolerated(0.49) benign(0.001) TCGA-AC-A8OS-01 20 17474753 17474753 G A BFSP1 Missense_Mutation p.S655L 0.22 deleterious(0.02) unknown(0) TCGA-AC-A8OS-01 20 34214536 34214536 C T CPNE1 Missense_Mutation p.A481T 0.08 deleterious(0) benign(0.26) TCGA-AC-A8OS-01 20 6068532 6068532 T C FERMT1 Splice_Site p.X422_splice 0.20 TCGA-AC-A8OS-01 20 61826956 61826956 G A YTHDF1 3'UTR 0.12 TCGA-AC-A8OS-01 21 34922540 34922540 G A SON Missense_Mutation p.E335K 0.16 benign(0.292) TCGA-AC-A8OS-01 22 22890599 22890599 A G PRAME Silent p.L474L 0.31 TCGA-AC-A8OS-01 22 50277935 50277939 GTCCA - ZBED4 Frame_Shift_Del p.V209Efs*5 0.25 TCGA-AC-A8OS-01 2 11053663 11053663 G A KCNF1 Missense_Mutation p.V371I 0.21 deleterious(0) probably_damaging(0.998) TCGA-AC-A8OS-01 3 142217528 142217528 C T ATR Silent p.L1823L 0.25 TCGA-AC-A8OS-01 3 142431512 142431512 T G PLS1 3'UTR 0.19 TCGA-AC-A8OS-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.29 tolerated(0.44) benign(0.085) TCGA-AC-A8OS-01 3 18390038 18390038 T A SATB1 3'UTR 0.11 TCGA-AC-A8OS-01 3 19492691 19492691 G T KCNH8 Missense_Mutation p.M540I 0.16 deleterious(0.01) possibly_damaging(0.496) TCGA-AC-A8OS-01 3 3081918 3081918 T C CNTN4 Silent p.P787P 0.14 TCGA-AC-A8OS-01 3 63968012 63968012 T C ATXN7 Silent p.P301P 0.23 TCGA-AC-A8OS-01 3 88191494 88191494 A G ZNF654 3'UTR 0.23 TCGA-AC-A8OS-01 3 97686281 97686282 TC - MINA Frame_Shift_Del p.E52Dfs*18 0.16 TCGA-AC-A8OS-01 5 114916396 114916396 G C TMED7-TICAM2 Silent p.P355P 0.24 TCGA-AC-A8OS-01 5 36152997 36152997 G T SKP2 Nonsense_Mutation p.E45* 0.25 TCGA-AC-A8OS-01 5 88016932 88016932 G A MEF2C 3'UTR 0.15 TCGA-AC-A8OS-01 6 12123931 12123931 T A HIVEP1 Silent p.T1301T 0.16 TCGA-AC-A8OS-01 6 159128302 159128302 T C SYTL3 Silent p.Y145Y 0.27 TCGA-AC-A8OS-01 6 31610668 31610668 T C BAG6 Missense_Mutation p.T631A 0.23 deleterious(0.01) benign(0.055) TCGA-AC-A8OS-01 6 36269703 36269703 A G PNPLA1 Missense_Mutation p.I281V 0.21 deleterious(0.01) benign(0.338) TCGA-AC-A8OS-01 6 43588990 43588990 G A GTPBP2 3'UTR 0.16 TCGA-AC-A8OS-01 6 85447008 85447008 T A TBX18 Missense_Mutation p.S407C 0.17 tolerated(0.12) benign(0.241) TCGA-AC-A8OS-01 7 100678332 100678332 C G MUC17 Nonsense_Mutation p.S1212* 0.14 TCGA-AC-A8OS-01 7 129122733 129122733 C T STRIP2 Silent p.V700V 0.17 TCGA-AC-A8OS-01 7 132192493 132192493 G A PLXNA4 Silent p.A320A 0.16 TCGA-AC-A8OS-01 7 51092945 51092945 G A COBL Missense_Mutation p.P1210L 0.16 tolerated(0.06) benign(0.025) TCGA-AC-A8OS-01 7 99161798 99161798 C G ZNF655 Intron 0.27 TCGA-AC-A8OS-01 8 117768046 117768046 C T EIF3H 5'UTR 0.10 TCGA-AC-A8OS-01 8 25280836 25280836 A T GNRH1 Missense_Mutation p.I4N 0.22 tolerated(0.28) benign(0.001) TCGA-AC-A8OS-01 8 38001875 38001875 C G STAR Missense_Mutation p.Q258H 0.21 tolerated(0.06) benign(0.009) TCGA-AC-A8OS-01 8 92007754 92007754 A G TMEM55A 3'UTR 0.06 TCGA-AC-A8OS-01 9 117822097 117822097 G T TNC Silent p.G1406G 0.23 TCGA-AC-A8OS-01 9 14868888 14868888 G A FREM1 Missense_Mutation p.R30C 0.21 deleterious(0.04) possibly_damaging(0.586) TCGA-AC-A8OS-01 9 16552599 16552599 C G BNC2 Missense_Mutation p.E200Q 0.11 deleterious(0.01) probably_damaging(0.963) TCGA-AC-A8OS-01 X 10104745 10104745 C T WWC3 Nonsense_Mutation p.R946* 0.27 TCGA-AC-A8OS-01 X 131515417 131515417 A G MBNL3 Intron 0.22 TCGA-AC-A8OS-01 X 152615589 152615589 G A ZNF275 3'UTR 0.19 TCGA-AC-A8OS-01 X 47775171 47775171 C T ZNF81 Missense_Mutation p.H376Y 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-AN-A0XL-01 10 114849224 114849224 T C TCF7L2 Intron 0.30 TCGA-AN-A0XL-01 10 129905447 129905447 C A MKI67 Missense_Mutation p.A1553S 0.26 tolerated(0.34) possibly_damaging(0.878) TCGA-AN-A0XL-01 11 27148982 27148982 G A BBOX1 Silent p.R382R 0.61 TCGA-AN-A0XL-01 11 36119903 36119903 G A LDLRAD3 Missense_Mutation p.A116T 0.05 tolerated(0.34) benign(0.016) TCGA-AN-A0XL-01 11 59245427 59245427 C A OR4D10 Missense_Mutation p.D175E 0.04 deleterious(0) possibly_damaging(0.651) TCGA-AN-A0XL-01 11 73076908 73076908 G A ARHGEF17 Missense_Mutation p.G1971S 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-AN-A0XL-01 15 86124520 86124520 C T AKAP13 Missense_Mutation p.S1074F 0.25 tolerated_low_confidence(0.15) benign(0.003) TCGA-AN-A0XL-01 15 90347735 90347736 - G ANPEP Frame_Shift_Ins p.L338Tfs*52 0.14 TCGA-AN-A0XL-01 17 62855860 62855860 G A LRRC37A3 Silent p.S1468S 0.07 TCGA-AN-A0XL-01 17 74154520 74154520 G A RNF157 Missense_Mutation p.S456L 0.25 deleterious_low_confidence(0.05) benign(0.409) TCGA-AN-A0XL-01 18 29497565 29497565 C A TRAPPC8 Nonsense_Mutation p.E140* 0.15 TCGA-AN-A0XL-01 19 14710534 14710534 G A CLEC17A Missense_Mutation p.G218S 0.18 deleterious(0.05) possibly_damaging(0.874) TCGA-AN-A0XL-01 19 18895094 18895094 C T COMP Missense_Mutation p.R665Q 0.31 deleterious(0.02) benign(0.015) TCGA-AN-A0XL-01 19 44103176 44103176 C T ZNF576 Silent p.H93H 0.09 TCGA-AN-A0XL-01 1 148560942 148560942 C A NBPF15 5'UTR 0.17 TCGA-AN-A0XL-01 1 149783828 149783828 C A HIST2H2BF Missense_Mutation p.K17N 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-AN-A0XL-01 1 158261934 158261934 G A CD1C Missense_Mutation p.G130D 0.15 tolerated(0.08) benign(0.443) TCGA-AN-A0XL-01 1 180159688 180159689 - A QSOX1 Frame_Shift_Ins p.N422Kfs*33 0.23 TCGA-AN-A0XL-01 1 217688214 217688214 T G GPATCH2 Silent p.P372P 0.23 TCGA-AN-A0XL-01 1 8421506 8421506 A C RERE Missense_Mutation p.S687R 0.33 probably_damaging(0.996) TCGA-AN-A0XL-01 20 30064160 30064160 A G REM1 5'UTR 0.22 TCGA-AN-A0XL-01 21 27141488 27141488 C G GABPA Missense_Mutation p.P437R 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.606) TCGA-AN-A0XL-01 21 34060656 34060656 T G SYNJ1 Missense_Mutation p.M310L 0.08 tolerated(1) benign(0.028) TCGA-AN-A0XL-01 22 18463645 18463645 C A MICAL3 Intron 0.23 TCGA-AN-A0XL-01 22 23055588 23055588 A G IGLV3-21 Missense_Mutation p.N84S 0.16 tolerated(0.28) benign(0.055) TCGA-AN-A0XL-01 22 38824148 38824148 C T KCNJ4 5'UTR 0.31 TCGA-AN-A0XL-01 3 10370621 10370621 C T ATP2B2 Silent p.P1203P 0.29 TCGA-AN-A0XL-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.47 tolerated(0.11) possibly_damaging(0.529) TCGA-AN-A0XL-01 3 436516 436516 A T CHL1 Nonsense_Mutation p.K1019* 0.15 TCGA-AN-A0XL-01 4 100232778 100232778 G T ADH1B Silent p.G288G 0.31 TCGA-AN-A0XL-01 4 126411812 126411812 C A FAT4 Missense_Mutation p.S4612Y 0.06 possibly_damaging(0.564) TCGA-AN-A0XL-01 4 44653634 44653634 A T YIPF7 Nonsense_Mutation p.L3* 0.05 TCGA-AN-A0XL-01 6 27775649 27775649 C T HIST1H2BL Silent p.K12K 0.13 TCGA-AN-A0XL-01 6 55300445 55300445 A T HMGCLL1 3'UTR 0.29 TCGA-AN-A0XL-01 6 87966725 87966747 ATATGCTGCATTTAAAATGCAGC - ZNF292 Frame_Shift_Del p.Y1127Qfs*3 0.31 TCGA-AN-A0XL-01 7 142104224 142104224 C T TRBV6-9 Missense_Mutation p.D81N 0.26 tolerated(0.25) benign(0.004) TCGA-AN-A0XL-01 7 41729515 41729515 C T INHBA Nonsense_Mutation p.W338* 0.29 TCGA-AN-A0XL-01 7 87005203 87005203 G A CROT Silent p.Q298Q 0.19 TCGA-AN-A0XL-01 8 385697 385697 A C FBXO25 Missense_Mutation p.Y124S 0.06 deleterious(0) probably_damaging(0.995) TCGA-AN-A0XL-01 8 97263275 97263277 AGG - MTERFD1 In_Frame_Del p.L180del 0.17 TCGA-AN-A0XL-01 9 21481249 21481249 G A IFNE Nonsense_Mutation p.R149* 0.27 TCGA-AN-A0XL-01 X 100083082 100083082 C T CSTF2 Missense_Mutation p.R294W 0.25 tolerated(0.05) benign(0) TCGA-AN-A0XL-01 X 152226932 152226932 G T PNMA3 3'UTR 0.17 TCGA-AN-A0XL-01 X 85282501 85282501 A G CHM Missense_Mutation p.V37A 0.29 deleterious(0) possibly_damaging(0.695) TCGA-AN-A0XN-01 10 101611335 101611335 T C ABCC2 Missense_Mutation p.Y1529H 0.23 deleterious(0.05) benign(0.031) TCGA-AN-A0XN-01 10 103988973 103988973 C G ELOVL3 Missense_Mutation p.I259M 0.31 deleterious(0.04) possibly_damaging(0.664) TCGA-AN-A0XN-01 10 105798207 105798207 G T COL17A1 Missense_Mutation p.S1009R 0.36 probably_damaging(0.974) TCGA-AN-A0XN-01 10 105905312 105905312 C T WDR96 Missense_Mutation p.R1289H 0.09 tolerated(0.07) possibly_damaging(0.721) TCGA-AN-A0XN-01 10 21784495 21784495 G T CASC10 3'UTR 0.21 TCGA-AN-A0XN-01 10 32977992 32977992 G T C10ORF68 Nonsense_Mutation p.E56* 0.16 TCGA-AN-A0XN-01 10 33199265 33199265 G C ITGB1 Missense_Mutation p.Q684E 0.32 tolerated(0.27) benign(0.005) TCGA-AN-A0XN-01 10 50311826 50311831 GGTGAA - VSTM4 Intron 0.19 TCGA-AN-A0XN-01 10 5471136 5471136 A G NET1 Missense_Mutation p.R67G 0.07 deleterious(0) probably_damaging(0.997) TCGA-AN-A0XN-01 10 70645645 70645645 G T STOX1 Missense_Mutation p.G698V 0.22 tolerated(0.19) benign(0) TCGA-AN-A0XN-01 10 73572580 73572580 G T CDH23 Missense_Mutation p.R949L 0.11 deleterious_low_confidence(0) benign(0.298) TCGA-AN-A0XN-01 10 75435825 75435825 G T AGAP5 Missense_Mutation p.T198N 0.14 tolerated_low_confidence(0.1) possibly_damaging(0.702) TCGA-AN-A0XN-01 10 75556956 75556956 G C ZSWIM8 Missense_Mutation p.L1120F 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.812) TCGA-AN-A0XN-01 10 90672857 90672857 G T STAMBPL1 Splice_Site p.X141_splice 0.23 TCGA-AN-A0XN-01 10 96967145 96967145 G T C10orf129 Missense_Mutation p.G195V 0.31 deleterious(0) probably_damaging(0.953) TCGA-AN-A0XN-01 11 32635102 32635102 G A CCDC73 Missense_Mutation p.A921V 0.23 tolerated(1) benign(0.003) TCGA-AN-A0XN-01 11 33106715 33106715 G A CSTF3 Missense_Mutation p.S691L 0.13 tolerated(0.16) benign(0.34) TCGA-AN-A0XN-01 11 4843430 4843430 T A OR51F2 Nonsense_Mutation p.L272* 0.07 TCGA-AN-A0XN-01 11 50003128 50003129 - T OR4C12 Frame_Shift_Ins p.V304Sfs*5 0.12 TCGA-AN-A0XN-01 11 51412037 51412037 C G OR4A5 Missense_Mutation p.R120P 0.10 deleterious_low_confidence(0) benign(0.095) TCGA-AN-A0XN-01 11 56310244 56310244 G A OR5M11 Missense_Mutation p.R164C 0.07 tolerated(0.07) benign(0.077) TCGA-AN-A0XN-01 11 93844127 93844127 T C HEPHL1 Missense_Mutation p.I1035T 0.04 deleterious(0.02) benign(0.042) TCGA-AN-A0XN-01 12 102591115 102591115 A G PARPBP 3'Flank 0.17 TCGA-AN-A0XN-01 12 129154029 129154029 C A TMEM132C Missense_Mutation p.S458Y 0.22 deleterious(0) possibly_damaging(0.882) TCGA-AN-A0XN-01 12 18435045 18435045 T C PIK3C2G Silent p.N10N 0.21 TCGA-AN-A0XN-01 12 50571618 50571618 G T LIMA1 Silent p.V504V 0.21 TCGA-AN-A0XN-01 12 68647221 68647221 G T IL22 Missense_Mutation p.A3D 0.15 tolerated(0.05) benign(0.373) TCGA-AN-A0XN-01 12 88380088 88380088 C G C12orf50 Splice_Site p.X308_splice 0.17 TCGA-AN-A0XN-01 13 27645275 27645275 C T USP12 Missense_Mutation p.R315Q 0.52 tolerated(0.07) possibly_damaging(0.666) TCGA-AN-A0XN-01 13 78470754 78470754 G T EDNRB 3'UTR 0.40 TCGA-AN-A0XN-01 14 52735064 52735064 T G PTGDR Missense_Mutation p.C178G 0.33 deleterious(0) probably_damaging(0.993) TCGA-AN-A0XN-01 14 55819095 55819095 G C FBXO34 Missense_Mutation p.G663R 0.42 deleterious(0) probably_damaging(1) TCGA-AN-A0XN-01 14 77319604 77319604 G A C14orf166B Missense_Mutation p.G287R 0.18 deleterious(0) possibly_damaging(0.839) TCGA-AN-A0XN-01 14 77723060 77723060 G C TMEM63C Missense_Mutation p.Q804H 0.09 tolerated(0.18) benign(0.004) TCGA-AN-A0XN-01 14 90769385 90769385 C A NRDE2 Nonsense_Mutation p.E364* 0.40 TCGA-AN-A0XN-01 14 90769387 90769387 A G NRDE2 Missense_Mutation p.L363P 0.40 deleterious(0) probably_damaging(0.992) TCGA-AN-A0XN-01 15 34395268 34395268 C A PGBD4 Missense_Mutation p.T179K 0.25 tolerated(1) benign(0.376) TCGA-AN-A0XN-01 15 48056264 48056264 G A SEMA6D Missense_Mutation p.S322N 0.04 deleterious(0) benign(0.387) TCGA-AN-A0XN-01 15 50226338 50226338 A T ATP8B4 Missense_Mutation p.D443E 0.26 tolerated(0.31) benign(0.02) TCGA-AN-A0XN-01 15 71211475 71211475 T C LRRC49 Silent p.L223L 0.27 TCGA-AN-A0XN-01 15 91030305 91030305 C T IQGAP1 Nonsense_Mutation p.R1382* 0.08 TCGA-AN-A0XN-01 16 19883490 19883490 G C GPRC5B Missense_Mutation p.F226L 0.17 tolerated(0.2) probably_damaging(0.996) TCGA-AN-A0XN-01 16 20576155 20576155 G A ACSM2B Nonsense_Mutation p.R5* 0.23 TCGA-AN-A0XN-01 16 24580268 24580268 T A RBBP6 Missense_Mutation p.Y753N 0.12 deleterious_low_confidence(0) unknown(0) TCGA-AN-A0XN-01 16 28493806 28493806 G C CLN3 Missense_Mutation p.Q300E 0.34 deleterious(0) benign(0.282) TCGA-AN-A0XN-01 16 4861275 4861275 T G GLYR1 Missense_Mutation p.K495Q 0.05 tolerated(0.44) benign(0.001) TCGA-AN-A0XN-01 16 58709846 58709846 G T SLC38A7 Missense_Mutation p.T294K 0.24 deleterious(0) probably_damaging(1) TCGA-AN-A0XN-01 16 67241593 67241593 A C LRRC29 Missense_Mutation p.V196G 0.32 deleterious(0) possibly_damaging(0.701) TCGA-AN-A0XN-01 16 68156087 68156087 G C NFATC3 Missense_Mutation p.G101R 0.20 deleterious(0) benign(0.398) TCGA-AN-A0XN-01 17 15492463 15492468 AGCTGT - CDRT1 In_Frame_Del p.T694_A695del 0.15 TCGA-AN-A0XN-01 17 262995 262995 A T C17orf97 Missense_Mutation p.I121F 0.21 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-AN-A0XN-01 17 37009972 37009972 C A RPL23 5'UTR 0.12 TCGA-AN-A0XN-01 17 53040528 53040528 T C COX11 Intron 0.15 TCGA-AN-A0XN-01 17 65103686 65103686 T G HELZ Missense_Mutation p.S1614R 0.17 tolerated_low_confidence(0.14) unknown(0) TCGA-AN-A0XN-01 17 73736514 73736514 C A ITGB4 Missense_Mutation p.A841D 0.09 tolerated(0.66) benign(0) TCGA-AN-A0XN-01 17 7578556 7578556 T C TP53 Splice_Site p.X126_splice 0.38 TCGA-AN-A0XN-01 17 76503682 76503682 G A DNAH17 Missense_Mutation p.T1477M 0.15 benign(0.09) TCGA-AN-A0XN-01 17 7661953 7661953 G A DNAH2 Missense_Mutation p.R731H 0.50 probably_damaging(0.932) TCGA-AN-A0XN-01 17 7662906 7662906 A G DNAH2 Missense_Mutation p.D872G 0.29 benign(0.002) TCGA-AN-A0XN-01 17 8396156 8396156 C T MYH10 Missense_Mutation p.D1466N 0.67 possibly_damaging(0.492) TCGA-AN-A0XN-01 18 31324924 31324930 AACACAG - ASXL3 Frame_Shift_Del p.Q1706* 0.29 TCGA-AN-A0XN-01 18 3277358 3277358 G T MYL12B Missense_Mutation p.D98Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XN-01 18 73122535 73122535 T G SMIM21 3'UTR 0.19 TCGA-AN-A0XN-01 18 77733821 77733918 TTGCCAGTCCCCAAGTCAATCATGATGTGCTTGTTCCTGCAACGAGAAACAAGGGCATCCATTCTCATAGAAGTCTCTTTAAAAAAGAATTCCTTGAA CCAGTCCCCAAGTCAATCATGATGTGCTTGTTCCTGC TXNL4A Splice_Site p.X86_splice 0.12 TCGA-AN-A0XN-01 19 13080546 13080546 T C DAND5 Silent p.P24P 0.10 TCGA-AN-A0XN-01 19 18896603 18896603 C G COMP Missense_Mutation p.K516N 0.44 tolerated(0.4) benign(0.351) TCGA-AN-A0XN-01 19 18896620 18896620 C T COMP Missense_Mutation p.D511N 0.33 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XN-01 19 18900027 18900027 C T COMP Missense_Mutation p.G157E 0.36 deleterious(0) possibly_damaging(0.866) TCGA-AN-A0XN-01 19 33090934 33090934 T C ANKRD27 Silent p.L930L 0.25 TCGA-AN-A0XN-01 19 36104782 36104782 G C HAUS5 Missense_Mutation p.K58N 0.15 deleterious(0.01) possibly_damaging(0.853) TCGA-AN-A0XN-01 19 36883688 36883688 A G ZFP82 Silent p.H518H 0.20 TCGA-AN-A0XN-01 19 39899350 39899350 G A ZFP36 3'UTR 0.17 TCGA-AN-A0XN-01 19 39914124 39914124 A T PLEKHG2 Silent p.S810S 0.12 TCGA-AN-A0XN-01 19 47422145 47422145 C T ARHGAP35 Silent p.D71D 0.29 TCGA-AN-A0XN-01 19 54660546 54660546 C T LENG1 Missense_Mutation p.R177H 0.23 tolerated(0.22) benign(0) TCGA-AN-A0XN-01 19 57642432 57642432 A C USP29 Missense_Mutation p.I797L 0.28 tolerated(0.24) possibly_damaging(0.457) TCGA-AN-A0XN-01 19 9324928 9324928 T A OR7D4 Missense_Mutation p.N196Y 0.30 tolerated(0.08) benign(0.114) TCGA-AN-A0XN-01 1 10678420 10678420 C T PEX14 Silent p.G110G 0.32 TCGA-AN-A0XN-01 1 152883341 152883341 G T IVL Silent p.L356L 0.12 TCGA-AN-A0XN-01 1 156021546 156021546 C T UBQLN4 Missense_Mutation p.G71R 0.14 deleterious(0) unknown(0) TCGA-AN-A0XN-01 1 157804422 157804422 T C CD5L Missense_Mutation p.T165A 0.16 tolerated(0.88) benign(0.003) TCGA-AN-A0XN-01 1 157811573 157811573 A C CD5L 5'UTR 0.15 TCGA-AN-A0XN-01 1 16069647 16069647 G C TMEM82 Missense_Mutation p.E98D 0.15 deleterious(0) probably_damaging(0.983) TCGA-AN-A0XN-01 1 160850397 160850397 A G ITLN1 Silent p.Y222Y 0.13 TCGA-AN-A0XN-01 1 161697280 161697280 A T FCRLB Missense_Mutation p.D370V 0.18 deleterious_low_confidence(0) benign(0.138) TCGA-AN-A0XN-01 1 16255132 16255132 G C SPEN Silent p.P799P 0.18 TCGA-AN-A0XN-01 1 176857332 176857332 C A ASTN1 Missense_Mutation p.Q983H 0.11 deleterious(0) probably_damaging(0.996) TCGA-AN-A0XN-01 1 183515472 183515472 G A SMG7 Silent p.E868E 0.10 TCGA-AN-A0XN-01 1 19545923 19545923 C T EMC1 Silent p.Q952Q 0.17 TCGA-AN-A0XN-01 1 203154456 203154456 T A CHI3L1 Missense_Mutation p.D38V 0.11 tolerated(0.4) benign(0.01) TCGA-AN-A0XN-01 1 226421094 226421100 TTTTCAT - LIN9 Frame_Shift_Del p.N473Ifs*2 0.13 TCGA-AN-A0XN-01 1 231052041 231052041 T G TTC13 Missense_Mutation p.N664T 0.10 deleterious(0.02) possibly_damaging(0.876) TCGA-AN-A0XN-01 1 248343859 248343859 A G OR2M2 Missense_Mutation p.D191G 0.12 deleterious(0) possibly_damaging(0.731) TCGA-AN-A0XN-01 1 35835672 35835672 C G ZMYM4 Missense_Mutation p.L295V 0.11 deleterious(0.01) possibly_damaging(0.624) TCGA-AN-A0XN-01 1 39907664 39907664 G A MACF1 Missense_Mutation p.C4179Y 0.18 probably_damaging(1) TCGA-AN-A0XN-01 1 43200803 43200803 G T CLDN19 Missense_Mutation p.P210Q 0.15 tolerated(0.48) benign(0.005) TCGA-AN-A0XN-01 1 43296678 43296678 G A ERMAP Missense_Mutation p.V109I 0.14 tolerated(0.15) benign(0.058) TCGA-AN-A0XN-01 1 52344078 52344078 C G NRD1 Missense_Mutation p.Q70H 0.11 tolerated_low_confidence(0.06) benign(0.002) TCGA-AN-A0XN-01 20 1538282 1538282 G T RP4-576H24.4 Intron 0.18 TCGA-AN-A0XN-01 20 39798875 39798875 A G PLCG1 Missense_Mutation p.K925R 0.13 tolerated(0.25) benign(0.144) TCGA-AN-A0XN-01 20 43851144 43851144 T C SEMG2 Missense_Mutation p.S291P 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-AN-A0XN-01 20 44639873 44639873 C T MMP9 Silent p.D247D 0.21 TCGA-AN-A0XN-01 20 45130495 45130495 C A ZNF334 Missense_Mutation p.G495C 0.13 deleterious(0) possibly_damaging(0.58) TCGA-AN-A0XN-01 20 45702872 45702872 G A EYA2 Missense_Mutation p.V187I 0.11 tolerated(0.11) benign(0.3) TCGA-AN-A0XN-01 20 5904477 5904477 T C CHGB Missense_Mutation p.F563L 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-AN-A0XN-01 21 31986039 31986039 C A KRTAP6-1 Missense_Mutation p.G62V 0.27 unknown(0) TCGA-AN-A0XN-01 21 33750825 33750825 T G URB1 Missense_Mutation p.Y198S 0.17 deleterious(0) probably_damaging(0.997) TCGA-AN-A0XN-01 22 26100079 26100079 G A ADRBK2 Missense_Mutation p.V411M 0.14 deleterious(0.02) possibly_damaging(0.711) TCGA-AN-A0XN-01 22 36689868 36689868 G A MYH9 Silent p.D1293D 0.21 TCGA-AN-A0XN-01 22 41652046 41652046 G A RANGAP1 Missense_Mutation p.A351V 0.38 tolerated(0.12) benign(0.013) TCGA-AN-A0XN-01 22 43465764 43465764 T C TTLL1 Missense_Mutation p.N67S 0.18 deleterious(0) probably_damaging(0.984) TCGA-AN-A0XN-01 2 109088320 109088320 A G GCC2 Silent p.K845K 0.10 TCGA-AN-A0XN-01 2 170044626 170044626 G A LRP2 Missense_Mutation p.S3061F 0.04 probably_damaging(0.987) TCGA-AN-A0XN-01 2 199011790 199011790 A C PLCL1 3'UTR 0.38 TCGA-AN-A0XN-01 2 216298131 216298131 T C FN1 Missense_Mutation p.T111A 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-AN-A0XN-01 2 56144946 56144946 G - EFEMP1 Frame_Shift_Del p.A124Efs*51 0.27 TCGA-AN-A0XN-01 2 56144947 56144947 C A EFEMP1 Missense_Mutation p.A124S 0.27 tolerated(0.41) benign(0.103) TCGA-AN-A0XN-01 2 62081050 62081050 C T FAM161A Missense_Mutation p.E43K 0.14 tolerated(0.31) benign(0.03) TCGA-AN-A0XN-01 2 71913822 71913822 T C DYSF 3'Flank 0.40 TCGA-AN-A0XN-01 2 96919421 96919421 A G TMEM127 3'UTR 0.07 TCGA-AN-A0XN-01 2 96934236 96934236 C A CIAO1 Nonsense_Mutation p.Y177* 0.05 TCGA-AN-A0XN-01 2 98914472 98914472 C G VWA3B Missense_Mutation p.A1087G 0.20 deleterious(0.01) possibly_damaging(0.606) TCGA-AN-A0XN-01 3 1414136 1414136 C T CNTN6 Missense_Mutation p.A549V 0.04 tolerated(0.06) benign(0.099) TCGA-AN-A0XN-01 3 145841966 145841966 G A PLOD2 Nonsense_Mutation p.R54* 0.16 TCGA-AN-A0XN-01 3 151154674 151154674 C G IGSF10 Missense_Mutation p.E2559Q 0.39 deleterious(0.04) benign(0.367) TCGA-AN-A0XN-01 3 179311547 179311584 ACATACCAGATGATTCTTCCAAAGATGTCTCTTCTCCA - MRPL47 Splice_Site p.X168_splice 0.24 TCGA-AN-A0XN-01 3 195295724 195295724 G A APOD 3'UTR 0.06 TCGA-AN-A0XN-01 3 196509620 196509620 C G PAK2 Missense_Mutation p.H35D 0.15 tolerated(0.19) benign(0.04) TCGA-AN-A0XN-01 3 197556459 197556466 ATATTTAA - LRCH3 Frame_Shift_Del p.F269Pfs*7 0.27 TCGA-AN-A0XN-01 3 27394317 27394317 T G NEK10 Missense_Mutation p.Q19H 0.32 tolerated_low_confidence(0.13) benign(0.001) TCGA-AN-A0XN-01 3 33194513 33194513 C A SUSD5 Silent p.L537L 0.15 TCGA-AN-A0XN-01 3 39162585 39162585 G C TTC21A Missense_Mutation p.G341A 0.10 tolerated(0.12) possibly_damaging(0.467) TCGA-AN-A0XN-01 3 50396249 50396249 C T TMEM115 Silent p.V82V 0.19 TCGA-AN-A0XN-01 3 51378786 51378786 G T DOCK3 Silent p.R1295R 0.22 TCGA-AN-A0XN-01 3 5220352 5220352 T G ARL8B Missense_Mutation p.I172S 0.13 tolerated(0.21) benign(0.181) TCGA-AN-A0XN-01 3 58124079 58124079 G C FLNB Silent p.G1675G 0.26 TCGA-AN-A0XN-01 4 159573147 159573147 C G RXFP1 Missense_Mutation p.F738L 0.13 tolerated_low_confidence(0.18) benign(0.003) TCGA-AN-A0XN-01 4 185329410 185329410 G C IRF2 Missense_Mutation p.S144C 0.23 deleterious(0.05) benign(0.293) TCGA-AN-A0XN-01 4 185550461 185550492 AAACAATACATGGAATCTGTTTCTTTGCATGA - CASP3 Frame_Shift_Del p.K259Hfs*19 0.12 TCGA-AN-A0XN-01 4 55979642 55979642 G A KDR Missense_Mutation p.H269Y 0.19 deleterious(0.02) benign(0.407) TCGA-AN-A0XN-01 4 88029327 88029327 C T AFF1 Missense_Mutation p.P465S 0.16 tolerated(0.07) unknown(0) TCGA-AN-A0XN-01 5 1219062 1219062 C T SLC6A19 Silent p.A406A 0.12 TCGA-AN-A0XN-01 5 13866371 13866371 G A DNAH5 Silent p.G1358G 0.34 TCGA-AN-A0XN-01 5 138729040 138729040 C G PROB1 Silent p.G577G 0.36 TCGA-AN-A0XN-01 5 13902205 13902205 G C DNAH5 Missense_Mutation p.Q563E 0.47 benign(0.149) TCGA-AN-A0XN-01 5 16481196 16481196 G C FAM134B Missense_Mutation p.L198V 0.08 deleterious(0) possibly_damaging(0.859) TCGA-AN-A0XN-01 5 38431296 38431296 C A EGFLAM Missense_Mutation p.T691N 0.36 tolerated(0.09) benign(0.052) TCGA-AN-A0XN-01 5 43174618 43174618 C A ZNF131 Missense_Mutation p.P385T 0.19 deleterious(0) probably_damaging(0.975) TCGA-AN-A0XN-01 5 55112515 55112515 C T DDX4 3'UTR 0.13 TCGA-AN-A0XN-01 5 73153573 73153573 A G ARHGEF28 Missense_Mutation p.N628S 0.20 tolerated(0.39) possibly_damaging(0.668) TCGA-AN-A0XN-01 6 119285934 119285934 C A FAM184A Missense_Mutation p.E1012D 0.08 tolerated(1) benign(0.021) TCGA-AN-A0XN-01 6 132891851 132891851 T C TAAR6 Missense_Mutation p.Y131H 0.07 tolerated(0.17) possibly_damaging(0.633) TCGA-AN-A0XN-01 6 135776985 135776985 T C AHI1 Missense_Mutation p.K411E 0.14 deleterious(0) possibly_damaging(0.447) TCGA-AN-A0XN-01 6 151055039 151055039 G A PLEKHG1 Silent p.T74T 0.26 TCGA-AN-A0XN-01 6 151125863 151125863 G C PLEKHG1 Missense_Mutation p.A300P 0.09 deleterious(0) probably_damaging(0.956) TCGA-AN-A0XN-01 6 152737562 152737562 C T SYNE1 Missense_Mutation p.E2004K 0.11 probably_damaging(0.995) TCGA-AN-A0XN-01 6 168347423 168347437 AGAGTGAAGGCTTTG - MLLT4 In_Frame_Del p.S1126_E1130del 0.20 TCGA-AN-A0XN-01 6 28403825 28403825 G T ZSCAN23 Nonsense_Mutation p.C73* 0.16 TCGA-AN-A0XN-01 6 35704942 35704942 C T ARMC12 Silent p.V19V 0.17 TCGA-AN-A0XN-01 6 4073690 4073690 C T FAM217A Missense_Mutation p.V71M 0.16 deleterious(0.01) benign(0.253) TCGA-AN-A0XN-01 6 44195040 44195040 A G SLC29A1 5'UTR 0.18 TCGA-AN-A0XN-01 6 52303141 52303141 A G EFHC1 Missense_Mutation p.M109V 0.18 tolerated(0.5) benign(0) TCGA-AN-A0XN-01 6 57244711 57244711 G C PRIM2 Missense_Mutation p.E158Q 0.07 deleterious(0.05) possibly_damaging(0.844) TCGA-AN-A0XN-01 7 103212629 103212629 A C RELN Splice_Site p.X1530_splice 0.13 TCGA-AN-A0XN-01 7 107420132 107420132 C A SLC26A3 Missense_Mutation p.R463L 0.07 deleterious(0.03) benign(0.146) TCGA-AN-A0XN-01 7 126086227 126086227 G A GRM8 Missense_Mutation p.P877L 0.05 deleterious(0) probably_damaging(0.997) TCGA-AN-A0XN-01 7 129297253 129297253 C T NRF1 Missense_Mutation p.A21V 0.19 tolerated_low_confidence(0.11) benign(0.166) TCGA-AN-A0XN-01 7 29966151 29966151 G C SCRN1 Missense_Mutation p.P355A 0.06 deleterious(0) possibly_damaging(0.791) TCGA-AN-A0XN-01 7 47897212 47897212 A G PKD1L1 Silent p.A1527A 0.16 TCGA-AN-A0XN-01 7 51095684 51095684 C G COBL Missense_Mutation p.V1037L 0.07 tolerated(0.32) benign(0.034) TCGA-AN-A0XN-01 7 74299920 74299920 C T STAG3L2 RNA 0.23 TCGA-AN-A0XN-01 7 99474106 99474106 A C OR2AE1 Missense_Mutation p.V184G 0.12 deleterious(0) possibly_damaging(0.896) TCGA-AN-A0XN-01 7 99965045 99965045 C T PILRB 3'UTR 0.16 TCGA-AN-A0XN-01 8 110441588 110441588 T C PKHD1L1 Missense_Mutation p.I1007T 0.17 tolerated(0.74) benign(0) TCGA-AN-A0XN-01 8 56699101 56699101 A T TGS1 Missense_Mutation p.Q215L 0.13 tolerated(1) possibly_damaging(0.529) TCGA-AN-A0XN-01 8 92982889 92982889 G A RUNX1T1 Silent p.S523S 0.15 TCGA-AN-A0XN-01 8 95189827 95189827 A G CDH17 Silent p.T91T 0.10 TCGA-AN-A0XN-01 9 101759318 101759318 G C COL15A1 Missense_Mutation p.E303Q 0.17 deleterious(0.04) possibly_damaging(0.462) TCGA-AN-A0XN-01 9 107289314 107289314 C T OR13C4 Missense_Mutation p.M59I 0.24 deleterious(0.01) benign(0.119) TCGA-AN-A0XN-01 9 115221807 115221807 C T HSDL2 Missense_Mutation p.A365V 0.13 tolerated(0.09) benign(0.248) TCGA-AN-A0XN-01 9 131247725 131247725 C A ODF2 Missense_Mutation p.L458I 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-AN-A0XN-01 9 4684908 4684908 A G CDC37L1 Missense_Mutation p.Q55R 0.21 deleterious(0.04) benign(0.008) TCGA-AN-A0XN-01 9 77502952 77502952 A G TRPM6 5'UTR 0.17 TCGA-AN-A0XN-01 X 107924995 107924995 C T COL4A5 Missense_Mutation p.P1365S 0.24 possibly_damaging(0.905) TCGA-AN-A0XN-01 X 41048632 41048633 - A USP9X Frame_Shift_Ins p.C1295Mfs*13 0.41 TCGA-AN-A0XN-01 X 68725887 68725887 C A FAM155B Missense_Mutation p.D254E 0.35 deleterious(0) probably_damaging(0.971) TCGA-AN-A0XN-01 X 70607214 70607214 T G TAF1 Nonsense_Mutation p.L797* 0.24 TCGA-AN-A0XO-01 10 121429471 121429471 C T BAG3 Missense_Mutation p.P97S 0.30 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XO-01 10 72541754 72541754 C T TBATA Missense_Mutation p.R27H 0.10 tolerated_low_confidence(0.87) benign(0.001) TCGA-AN-A0XO-01 11 89447501 89447501 A T TRIM77 Missense_Mutation p.T217S 0.38 tolerated(0.41) benign(0.164) TCGA-AN-A0XO-01 12 40714892 40714892 T C LRRK2 Missense_Mutation p.I1691T 0.39 deleterious(0.04) benign(0.105) TCGA-AN-A0XO-01 12 51771043 51771043 G A GALNT6 Silent p.V200V 0.29 TCGA-AN-A0XO-01 12 53344651 53344651 C T KRT18 Silent p.L206L 0.38 TCGA-AN-A0XO-01 12 7076766 7076766 C T PHB2 Intron 0.36 TCGA-AN-A0XO-01 12 78444719 78444719 C T NAV3 Nonsense_Mutation p.R770* 0.38 TCGA-AN-A0XO-01 13 20641448 20641448 A G ZMYM2 Missense_Mutation p.H1124R 0.36 tolerated(0.53) benign(0.001) TCGA-AN-A0XO-01 13 51855020 51855020 G C FAM124A Silent p.S459S 0.43 TCGA-AN-A0XO-01 14 105856299 105856299 C G PACS2 Missense_Mutation p.P679A 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-AN-A0XO-01 14 89124603 89124603 C G EML5 Missense_Mutation p.E1269Q 0.05 tolerated(0.12) benign(0.438) TCGA-AN-A0XO-01 16 2817256 2817261 GCCAGC - SRRM2 In_Frame_Del p.S2244_A2245del 0.28 TCGA-AN-A0XO-01 16 29790955 29790955 T C ZG16 Missense_Mutation p.V62A 0.23 tolerated(0.18) benign(0.432) TCGA-AN-A0XO-01 17 33767664 33767664 G C SLFN13 Missense_Mutation p.L882V 0.04 deleterious(0.02) benign(0.279) TCGA-AN-A0XO-01 17 33768604 33768604 G A SLFN13 Nonsense_Mutation p.Q634* 0.06 TCGA-AN-A0XO-01 19 36595494 36595494 T C WDR62 Missense_Mutation p.S1410P 0.11 tolerated_low_confidence(0.06) benign(0.004) TCGA-AN-A0XO-01 1 151162528 151162528 C T VPS72 Missense_Mutation p.E24K 0.26 deleterious(0.04) benign(0.358) TCGA-AN-A0XO-01 1 154918213 154918213 T A PBXIP1 Missense_Mutation p.D646V 0.49 deleterious(0) probably_damaging(0.995) TCGA-AN-A0XO-01 1 155736387 155736387 G C GON4L Missense_Mutation p.D959E 0.03 tolerated(0.5) benign(0.069) TCGA-AN-A0XO-01 1 156209505 156209505 C T PMF1 Intron 0.36 TCGA-AN-A0XO-01 1 55118602 55118602 G A MROH7 Translation_Start_Site p.M1? 0.56 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AN-A0XO-01 20 34843768 34843768 A G AAR2 3'UTR 0.38 TCGA-AN-A0XO-01 20 52612713 52612713 C T BCAS1 Intron 0.30 TCGA-AN-A0XO-01 21 28307044 28307044 C T ADAMTS5 Missense_Mutation p.R477Q 0.28 tolerated(0.89) benign(0.335) TCGA-AN-A0XO-01 2 102625087 102625095 AGCCTGCGG TGCGA IL1R2 Frame_Shift_Del p.Q17Lfs*29 0.31 TCGA-AN-A0XO-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.39 deleterious(0) probably_damaging(0.96) TCGA-AN-A0XO-01 2 207530641 207530641 G C DYTN Missense_Mutation p.Q365E 0.03 deleterious(0.02) benign(0.437) TCGA-AN-A0XO-01 2 241468736 241468736 G A ANKMY1 Missense_Mutation p.S135L 0.27 tolerated(0.11) benign(0.027) TCGA-AN-A0XO-01 2 24905948 24905948 C A NCOA1 Missense_Mutation p.H161Q 0.38 deleterious(0) probably_damaging(0.983) TCGA-AN-A0XO-01 2 32889484 32889484 A G TTC27 Missense_Mutation p.D252G 0.23 deleterious(0.01) benign(0.004) TCGA-AN-A0XO-01 2 96964156 96964156 A G SNRNP200 Silent p.L329L 0.32 TCGA-AN-A0XO-01 3 113379390 113379390 C G KIAA2018 Missense_Mutation p.G380A 0.10 benign(0.002) TCGA-AN-A0XO-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.56 tolerated(0.06) possibly_damaging(0.801) TCGA-AN-A0XO-01 4 134071406 134071406 C T PCDH10 Silent p.I37I 0.16 TCGA-AN-A0XO-01 4 57189551 57189551 A G KIAA1211 Missense_Mutation p.M1066V 0.29 tolerated(1) benign(0.043) TCGA-AN-A0XO-01 6 132938832 132938832 A G TAAR2 Silent p.P171P 0.31 TCGA-AN-A0XO-01 6 32818088 32818102 GGTGCTCACACTAGT - TAP1 Splice_Site p.X475_splice 0.24 TCGA-AN-A0XO-01 7 91763705 91763705 G A CYP51A1 5'UTR 0.29 TCGA-AN-A0XO-01 8 25325771 25325771 T C CDCA2 Missense_Mutation p.F193L 0.30 tolerated(0.21) benign(0.117) TCGA-AN-A0XO-01 8 68939478 68939478 C T PREX2 Missense_Mutation p.R155W 0.31 deleterious(0) probably_damaging(0.998) TCGA-AN-A0XO-01 9 123629214 123629214 C G PHF19 Missense_Mutation p.R215P 0.50 deleterious(0) possibly_damaging(0.704) TCGA-AN-A0XO-01 9 124079465 124079465 C T GSN Silent p.H336H 0.36 TCGA-AN-A0XO-01 9 125377610 125377610 G A OR1Q1 Missense_Mutation p.M198I 0.11 tolerated(0.08) benign(0.087) TCGA-AN-A0XO-01 9 134001019 134001019 C T NUP214 5'UTR 0.34 TCGA-AN-A0XO-01 X 48837669 48837669 C T GRIPAP1 Missense_Mutation p.E630K 0.30 benign(0.226) TCGA-AN-A0XP-01 11 64953422 64953422 T C CAPN1 Missense_Mutation p.V164A 0.30 deleterious(0) possibly_damaging(0.581) TCGA-AN-A0XP-01 12 105570747 105570747 C G APPL2 Missense_Mutation p.K579N 0.45 tolerated(0.28) benign(0.036) TCGA-AN-A0XP-01 12 2613646 2613646 C T CACNA1C Intron 0.05 TCGA-AN-A0XP-01 12 52115519 52115519 G A SCN8A Missense_Mutation p.E609K 0.38 tolerated(0.11) benign(0.415) TCGA-AN-A0XP-01 12 62784642 62784642 A C USP15 Splice_Site p.X615_splice 0.29 TCGA-AN-A0XP-01 13 37678520 37678520 A G CSNK1A1L Missense_Mutation p.Y292H 0.29 tolerated_low_confidence(0.07) benign(0.147) TCGA-AN-A0XP-01 14 20482985 20482985 C G OR4K14 Missense_Mutation p.R123T 0.29 deleterious(0) probably_damaging(0.964) TCGA-AN-A0XP-01 17 1839853 1839853 C T RTN4RL1 Silent p.S421S 0.65 TCGA-AN-A0XP-01 1 143663770 143663770 G T RP6-206I17.1 RNA 0.28 TCGA-AN-A0XP-01 1 146724328 146724328 C T CHD1L Missense_Mutation p.R60C 0.22 tolerated(1) benign(0.002) TCGA-AN-A0XP-01 1 149858866 149858866 C G HIST2H2AC Silent p.A114A 0.19 TCGA-AN-A0XP-01 1 225592382 225592382 C T LBR Missense_Mutation p.A504T 0.20 deleterious(0) probably_damaging(0.914) TCGA-AN-A0XP-01 1 82456542 82456542 T C LPHN2 Missense_Mutation p.S1309P 0.36 tolerated_low_confidence(0.07) probably_damaging(0.92) TCGA-AN-A0XP-01 20 52789446 52789446 A T CYP24A1 Splice_Site p.X150_splice 0.23 TCGA-AN-A0XP-01 20 53208270 53208270 A T DOK5 Missense_Mutation p.K175N 0.07 deleterious(0.01) possibly_damaging(0.833) TCGA-AN-A0XP-01 21 31802736 31802736 A G KRTAP13-4 Missense_Mutation p.Y48C 0.29 tolerated(0.06) benign(0.208) TCGA-AN-A0XP-01 22 38037425 38037425 C G SH3BP1 Missense_Mutation p.I49M 0.35 deleterious(0.02) possibly_damaging(0.77) TCGA-AN-A0XP-01 22 38881879 38881879 G T DDX17 3'UTR 0.36 TCGA-AN-A0XP-01 2 65243809 65243809 T C SLC1A4 Splice_Site p.X345_splice 0.41 TCGA-AN-A0XP-01 2 96956114 96956114 G A SNRNP200 Missense_Mutation p.P898S 0.29 tolerated(0.06) benign(0.019) TCGA-AN-A0XP-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-AN-A0XP-01 3 195538819 195538819 G A MUC4 5'UTR 0.31 TCGA-AN-A0XP-01 4 147561239 147561239 C T POU4F2 Missense_Mutation p.T170M 0.11 tolerated_low_confidence(0.11) benign(0.001) TCGA-AN-A0XP-01 4 187524066 187524066 G A FAT1 Nonsense_Mutation p.Q3825* 0.53 TCGA-AN-A0XP-01 4 71657122 71657123 - A RUFY3 Intron 0.30 TCGA-AN-A0XP-01 5 118860980 118860980 G - HSD17B4 Frame_Shift_Del 0.23 TCGA-AN-A0XP-01 5 150647121 150647121 T C GM2A 3'UTR 0.34 TCGA-AN-A0XP-01 5 5457514 5457514 G A KIAA0947 Missense_Mutation p.G254D 0.34 tolerated(0.1) benign(0.059) TCGA-AN-A0XP-01 5 95234058 95234064 CCTTATG - ELL2 Frame_Shift_Del p.H469Kfs*5 0.21 TCGA-AN-A0XP-01 6 28829641 28829641 G T XXbac-BPG308K3.6 RNA 0.27 TCGA-AN-A0XP-01 6 41304105 41304105 C A NCR2 Silent p.I111I 0.36 TCGA-AN-A0XP-01 7 151845282 151845283 GG - KMT2C Frame_Shift_Del p.P4577Cfs*4 0.27 TCGA-AN-A0XP-01 7 74234113 74234113 T C GTF2IRD2 Missense_Mutation p.N214S 0.43 tolerated_low_confidence(1) benign(0) TCGA-AN-A0XP-01 8 145154196 145154196 A C SHARPIN Silent p.A302A 0.26 TCGA-AN-A0XP-01 8 38684873 38684873 C T TACC1 Missense_Mutation p.A547V 0.35 tolerated(0.22) benign(0.222) TCGA-AN-A0XP-01 9 138714311 138714311 A T CAMSAP1 Silent p.T732T 0.32 TCGA-AN-A0XP-01 X 48924824 48924824 C T CCDC120 Missense_Mutation p.R357C 0.36 deleterious(0) benign(0.032) TCGA-AN-A0XP-01 X 56259713 56259713 G T KLF8 5'UTR 0.38 TCGA-AN-A0XR-01 10 8115874 8115875 - G GATA3 Frame_Shift_Ins p.P409Afs*99 0.33 TCGA-AN-A0XR-01 11 122805197 122805197 G A C11orf63 Missense_Mutation p.D350N 0.45 tolerated(0.14) benign(0.002) TCGA-AN-A0XR-01 11 62572921 62572921 G T NXF1 5'UTR 0.16 TCGA-AN-A0XR-01 12 115118687 115118688 - C TBX3 Frame_Shift_Ins p.F219Ifs*8 0.30 TCGA-AN-A0XR-01 12 247616 247616 A T IQSEC3 Missense_Mutation p.S363C 0.57 deleterious(0.01) probably_damaging(0.971) TCGA-AN-A0XR-01 12 346454 346454 C T SLC6A13 Missense_Mutation p.R189Q 0.38 deleterious(0.01) probably_damaging(0.909) TCGA-AN-A0XR-01 12 50757068 50757068 G T FAM186A Missense_Mutation p.S91Y 0.38 tolerated(1) possibly_damaging(0.743) TCGA-AN-A0XR-01 12 68642552 68642552 G T IL22 3'UTR 0.39 TCGA-AN-A0XR-01 12 93192857 93192857 A T EEA1 Silent p.S926S 0.47 TCGA-AN-A0XR-01 14 105246445 105246445 A C AKT1 Missense_Mutation p.L52R 0.89 deleterious(0) probably_damaging(1) TCGA-AN-A0XR-01 15 65345362 65345362 G A SLC51B Missense_Mutation p.A83T 0.41 tolerated(0.38) possibly_damaging(0.73) TCGA-AN-A0XR-01 16 30718965 30718965 G A SRCAP Missense_Mutation p.A189T 0.30 unknown(0) TCGA-AN-A0XR-01 16 66613573 66613573 G A CMTM2 Silent p.G21G 0.76 TCGA-AN-A0XR-01 16 67645513 67645520 AAAGGTAA - CTCF Splice_Site p.X260_splice 0.72 TCGA-AN-A0XR-01 16 68389705 68389705 C G PRMT7 Missense_Mutation p.P577R 0.92 deleterious(0) possibly_damaging(0.818) TCGA-AN-A0XR-01 17 11998971 11998972 - C MAP2K4 Frame_Shift_Ins p.Y160Ifs*14 0.47 TCGA-AN-A0XR-01 17 61628016 61628016 C T DCAF7 5'UTR 0.77 TCGA-AN-A0XR-01 17 62528954 62528954 C T CEP95 Intron 0.57 TCGA-AN-A0XR-01 19 16860188 16860188 G A NWD1 Silent p.P245P 0.50 TCGA-AN-A0XR-01 19 7712301 7712301 C T STXBP2 Missense_Mutation p.L534F 0.65 deleterious(0.01) possibly_damaging(0.895) TCGA-AN-A0XR-01 19 808664 808664 C G PTBP1 Missense_Mutation p.D455E 0.41 deleterious(0) probably_damaging(0.96) TCGA-AN-A0XR-01 19 8841539 8841539 G A OR2Z1 Missense_Mutation p.R50H 0.44 tolerated(0.91) benign(0) TCGA-AN-A0XR-01 1 110151266 110151266 C T GNAT2 Missense_Mutation p.D150N 0.41 deleterious(0) probably_damaging(0.987) TCGA-AN-A0XR-01 1 21014005 21014005 G A KIF17 Missense_Mutation p.P605L 0.26 deleterious_low_confidence(0.03) benign(0.049) TCGA-AN-A0XR-01 1 242253346 242253346 G T PLD5 Missense_Mutation p.A474E 0.31 tolerated(0.33) benign(0.004) TCGA-AN-A0XR-01 1 6206325 6206325 G A CHD5 Silent p.Y583Y 0.41 TCGA-AN-A0XR-01 1 76397891 76397891 C T ASB17 Missense_Mutation p.R29K 0.38 tolerated_low_confidence(0.09) benign(0.364) TCGA-AN-A0XR-01 20 43053126 43053126 G T HNF4A Intron 0.50 TCGA-AN-A0XR-01 20 49236588 49236588 C T FAM65C Silent p.S64S 0.43 TCGA-AN-A0XR-01 21 40587280 40587280 G C BRWD1 Missense_Mutation p.S1223C 0.43 deleterious(0) probably_damaging(0.997) TCGA-AN-A0XR-01 3 113374374 113374374 G A KIAA2018 Missense_Mutation p.S2052L 0.43 benign(0.031) TCGA-AN-A0XR-01 3 130134498 130134498 G A COL6A5 Missense_Mutation p.G1591R 0.44 deleterious(0) probably_damaging(0.989) TCGA-AN-A0XR-01 3 153943602 153943602 A T ARHGEF26 Intron 0.42 TCGA-AN-A0XR-01 5 112179286 112179286 C G APC Silent p.P2665P 0.37 TCGA-AN-A0XR-01 5 140307132 140307132 G C PCDHAC1 Missense_Mutation p.V219L 0.47 tolerated(0.09) benign(0.083) TCGA-AN-A0XR-01 5 162943532 162943532 G T MAT2B Missense_Mutation p.V179F 0.35 deleterious(0) possibly_damaging(0.888) TCGA-AN-A0XR-01 5 26881437 26881437 G T CDH9 Missense_Mutation p.D726E 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-AN-A0XR-01 6 125614019 125614019 C T HDDC2 Missense_Mutation p.D116N 0.43 tolerated(0.16) benign(0.008) TCGA-AN-A0XR-01 6 24456781 24456781 C T GPLD1 Missense_Mutation p.V365I 0.41 tolerated(0.85) benign(0.011) TCGA-AN-A0XR-01 7 75398942 75398942 G A CCL26 3'UTR 0.39 TCGA-AN-A0XR-01 8 95892348 95892348 C G INTS8 Missense_Mutation p.I958M 0.36 deleterious(0.04) benign(0.07) TCGA-AN-A0XR-01 X 54574726 54574726 G T GNL3L Missense_Mutation p.G232V 0.41 deleterious(0) probably_damaging(1) TCGA-AN-A0XS-01 10 8006100 8006103 ATTG - TAF3 Frame_Shift_Del p.L210Kfs*9 0.47 TCGA-AN-A0XS-01 11 118486807 118486807 G A PHLDB1 Missense_Mutation p.G79D 0.20 deleterious(0) probably_damaging(0.998) TCGA-AN-A0XS-01 11 118900133 118900133 C G SLC37A4 5'UTR 0.19 TCGA-AN-A0XS-01 11 61205311 61205311 T C SDHAF2 Missense_Mutation p.I84T 0.07 deleterious(0) probably_damaging(0.982) TCGA-AN-A0XS-01 12 104208866 104208866 T A NT5DC3 Missense_Mutation p.N81I 0.30 deleterious(0) probably_damaging(0.954) TCGA-AN-A0XS-01 15 41275191 41275191 G A INO80 Missense_Mutation p.A1441V 0.30 tolerated(0.24) benign(0.015) TCGA-AN-A0XS-01 18 51889197 51889197 G A C18orf54 Missense_Mutation p.E216K 0.25 tolerated(0.09) benign(0) TCGA-AN-A0XS-01 18 8088802 8088802 C T PTPRM Silent p.T603T 0.23 TCGA-AN-A0XS-01 19 10742416 10742416 A G SLC44A2 Missense_Mutation p.E206G 0.35 tolerated(0.06) benign(0.042) TCGA-AN-A0XS-01 1 12157238 12157238 G T TNFRSF8 Missense_Mutation p.A78S 0.33 tolerated(0.73) benign(0.046) TCGA-AN-A0XS-01 1 167667018 167667018 G T RCSD1 Missense_Mutation p.G386V 0.18 deleterious_low_confidence(0.01) benign(0.022) TCGA-AN-A0XS-01 1 2938095 2938095 C A ACTRT2 5'UTR 0.36 TCGA-AN-A0XS-01 1 36385097 36385097 C T AGO1 Intron 0.13 TCGA-AN-A0XS-01 1 51787886 51787886 C T TTC39A Intron 0.33 TCGA-AN-A0XS-01 1 64643303 64643303 A C ROR1 Missense_Mutation p.M527L 0.35 tolerated(1) benign(0.002) TCGA-AN-A0XS-01 20 3214874 3214874 G A SLC4A11 Silent p.N169N 0.36 TCGA-AN-A0XS-01 20 50287755 50287755 C T ATP9A Nonsense_Mutation p.W360* 0.30 TCGA-AN-A0XS-01 22 45789669 45789669 C T SMC1B Missense_Mutation p.E464K 0.38 tolerated(0.16) benign(0.025) TCGA-AN-A0XS-01 2 102507734 102507734 C T MAP4K4 3'UTR 0.18 TCGA-AN-A0XS-01 2 118866100 118866100 T G INSIG2 3'UTR 0.63 TCGA-AN-A0XS-01 2 148680662 148680662 C T ACVR2A Missense_Mutation p.R400C 0.36 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XS-01 2 201523988 201523988 T A AOX1 Missense_Mutation p.V1091E 0.31 deleterious(0) possibly_damaging(0.776) TCGA-AN-A0XS-01 2 216177253 216177253 G A ATIC Missense_Mutation p.V18M 0.35 deleterious(0.01) possibly_damaging(0.559) TCGA-AN-A0XS-01 2 88482517 88482517 C T THNSL2 Silent p.S334S 0.08 TCGA-AN-A0XS-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-AN-A0XS-01 3 73433946 73433946 C T PDZRN3 Missense_Mutation p.D591N 0.32 deleterious(0.02) benign(0.242) TCGA-AN-A0XS-01 4 85600076 85600076 T A WDFY3 Missense_Mutation p.K3381N 0.18 deleterious(0.01) benign(0.081) TCGA-AN-A0XS-01 5 140682837 140682837 G A SLC25A2 Missense_Mutation p.A199V 0.31 deleterious(0.03) possibly_damaging(0.698) TCGA-AN-A0XS-01 5 171766645 171766645 C A SH3PXD2B Missense_Mutation p.W488C 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-AN-A0XS-01 5 56155725 56155726 AG - MAP3K1 Frame_Shift_Del p.R273Sfs*27 0.25 TCGA-AN-A0XS-01 5 56177098 56177117 AGGTAATTTTTCTTCTGAAA - MAP3K1 Splice_Site p.X790_splice 0.47 TCGA-AN-A0XS-01 6 26598210 26598210 G T ABT1 Missense_Mutation p.D104Y 0.35 deleterious(0.04) probably_damaging(0.922) TCGA-AN-A0XS-01 7 30704716 30704716 G A CRHR2 Silent p.L198L 0.32 TCGA-AN-A0XS-01 8 67066484 67066484 G A TRIM55 Missense_Mutation p.R480Q 0.08 tolerated_low_confidence(0.93) benign(0) TCGA-AN-A0XS-01 8 82606515 82606515 A C SLC10A5 Missense_Mutation p.D231E 0.07 deleterious(0) probably_damaging(0.952) TCGA-AN-A0XT-01 12 3040249 3040249 A G TULP3 Missense_Mutation p.N180S 0.46 tolerated(0.5) benign(0.01) TCGA-AN-A0XT-01 13 48986180 48986180 A G LPAR6 Missense_Mutation p.L127P 0.57 deleterious(0) probably_damaging(0.925) TCGA-AN-A0XT-01 15 100649205 100649205 C T ADAMTS17 Missense_Mutation p.G669S 0.37 deleterious(0) possibly_damaging(0.719) TCGA-AN-A0XT-01 15 66795050 66795050 G A RPL4 Silent p.T107T 0.38 TCGA-AN-A0XT-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.78 TCGA-AN-A0XT-01 19 40368525 40368525 C T FCGBP Missense_Mutation p.E4275K 0.07 possibly_damaging(0.635) TCGA-AN-A0XT-01 19 49438313 49438313 C T DHDH Silent p.H49H 0.46 TCGA-AN-A0XT-01 1 36509128 36509128 C T AGO3 Silent p.L751L 0.43 TCGA-AN-A0XT-01 21 39671176 39671176 G T KCNJ15 5'UTR 0.30 TCGA-AN-A0XT-01 21 47549113 47549113 C T COL6A2 Intron 0.38 TCGA-AN-A0XT-01 22 38349806 38349806 C A POLR2F Missense_Mutation p.N4K 0.54 tolerated(0.3) unknown(0) TCGA-AN-A0XT-01 2 25457242 25457242 C T DNMT3A Missense_Mutation p.R882H 0.61 deleterious(0) probably_damaging(0.993) TCGA-AN-A0XT-01 2 29259479 29259479 G A FAM179A Missense_Mutation p.A831T 0.30 tolerated(0.15) benign(0.023) TCGA-AN-A0XT-01 2 65455000 65455000 G A ACTR2 5'UTR 0.27 TCGA-AN-A0XT-01 2 68794511 68794511 C T APLF Missense_Mutation p.T442M 0.10 tolerated(0.06) benign(0.269) TCGA-AN-A0XT-01 3 122990400 122990400 G A SEC22A Missense_Mutation p.R252Q 0.39 deleterious(0) probably_damaging(0.94) TCGA-AN-A0XT-01 3 58517469 58517469 G A ACOX2 Silent p.H218H 0.06 TCGA-AN-A0XT-01 3 71591235 71591235 C G MIR1284 RNA 0.35 TCGA-AN-A0XT-01 6 41243863 41243863 C T TREM1 Silent p.%3D 0.33 TCGA-AN-A0XT-01 7 154862859 154862859 G A HTR5A-AS1 Missense_Mutation p.T52M 0.55 tolerated_low_confidence(0.79) benign(0) TCGA-AN-A0XT-01 7 156619309 156619309 G A LMBR1 Silent p.S103S 0.34 TCGA-AN-A0XT-01 7 44621754 44621754 G A TMED4 Silent p.L18L 0.29 TCGA-AN-A0XU-01 10 102824287 102824287 G T KAZALD1 Silent p.V234V 0.10 TCGA-AN-A0XU-01 10 26436364 26436364 C T MYO3A Silent p.L837L 0.17 TCGA-AN-A0XU-01 10 75005836 75005836 G C DNAJC9 Missense_Mutation p.D140E 0.22 deleterious(0) probably_damaging(0.927) TCGA-AN-A0XU-01 10 81058277 81058277 G A ZMIZ1 Missense_Mutation p.V536I 0.55 benign(0.032) TCGA-AN-A0XU-01 11 101375047 101375065 TGGGAGAACCGTGTCCCAT - TRPC6 Frame_Shift_Del p.D212Vfs*3 0.59 TCGA-AN-A0XU-01 11 111857608 111857608 G T DIXDC1 Missense_Mutation p.S340I 0.17 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XU-01 11 117973953 117973953 G C TMPRSS4 Missense_Mutation p.G99R 0.21 tolerated(0.11) benign(0.013) TCGA-AN-A0XU-01 11 134238554 134238554 G T GLB1L2 Silent p.V302V 0.11 TCGA-AN-A0XU-01 11 27406951 27406951 G A LGR4 Missense_Mutation p.R156W 0.12 deleterious(0) probably_damaging(1) TCGA-AN-A0XU-01 11 46750993 46750993 A T F2 Silent p.T512T 0.28 TCGA-AN-A0XU-01 11 56510658 56510658 G A OR9G4 Silent p.Y210Y 0.25 TCGA-AN-A0XU-01 11 58317521 58317521 G A LPXN Silent p.G200G 0.19 TCGA-AN-A0XU-01 11 58893517 58893517 C G FAM111B Silent p.S649S 0.20 TCGA-AN-A0XU-01 11 88911483 88911483 G T TYR Missense_Mutation p.R121I 0.10 deleterious(0) possibly_damaging(0.739) TCGA-AN-A0XU-01 11 95825480 95825480 G A MAML2 Missense_Mutation p.P572L 0.17 probably_damaging(0.963) TCGA-AN-A0XU-01 12 100431225 100431225 C G UHRF1BP1L 3'UTR 0.69 TCGA-AN-A0XU-01 12 40715978 40715978 G C LRRK2 Missense_Mutation p.R1771T 0.05 tolerated(0.11) possibly_damaging(0.894) TCGA-AN-A0XU-01 12 6078528 6078528 G T VWF Missense_Mutation p.N2526K 0.54 tolerated(0.13) possibly_damaging(0.727) TCGA-AN-A0XU-01 12 66703901 66703901 G T HELB Missense_Mutation p.S398I 0.11 tolerated(0.07) benign(0.022) TCGA-AN-A0XU-01 13 100196173 100196201 TCCAAGAAAAGGGATGCTGCTATCAGTCT - TM9SF2 Frame_Shift_Del p.P359Sfs*55 0.13 TCGA-AN-A0XU-01 13 30854326 30854326 A T KATNAL1 Missense_Mutation p.V66D 0.52 deleterious(0) probably_damaging(0.962) TCGA-AN-A0XU-01 13 33635059 33635059 A G KL Missense_Mutation p.I615V 0.69 tolerated(0.89) benign(0.001) TCGA-AN-A0XU-01 13 45148403 45148403 G A TSC22D1 Missense_Mutation p.P603L 0.21 deleterious(0.01) benign(0.282) TCGA-AN-A0XU-01 14 19562091 19562091 G T POTEG Missense_Mutation p.R303I 0.42 tolerated(0.09) benign(0.005) TCGA-AN-A0XU-01 14 20444111 20444111 A T OR4K15 Missense_Mutation p.D145V 0.47 deleterious(0) probably_damaging(1) TCGA-AN-A0XU-01 14 20873681 20873681 C T TEP1 Missense_Mutation p.D267N 0.18 tolerated(0.17) benign(0.032) TCGA-AN-A0XU-01 14 65271779 65271779 A T SPTB Missense_Mutation p.F60I 0.24 deleterious(0) probably_damaging(1) TCGA-AN-A0XU-01 14 70634061 70634061 C A SLC8A3 Missense_Mutation p.R360L 0.07 deleterious(0) probably_damaging(0.984) TCGA-AN-A0XU-01 14 74449750 74449750 C G ENTPD5 Missense_Mutation p.E138Q 0.04 tolerated(0.21) possibly_damaging(0.742) TCGA-AN-A0XU-01 14 88792814 88792814 G T KCNK10 5'Flank 0.27 TCGA-AN-A0XU-01 15 75113559 75113559 G T LMAN1L Nonsense_Mutation p.G351* 0.17 TCGA-AN-A0XU-01 15 79291119 79291119 C A RASGRF1 Missense_Mutation p.R948I 0.57 deleterious(0) probably_damaging(0.992) TCGA-AN-A0XU-01 15 89849398 89849398 C T FANCI Silent p.Y1170Y 0.13 TCGA-AN-A0XU-01 16 16138367 16138367 G C ABCC1 Missense_Mutation p.K290N 0.06 tolerated(0.25) benign(0.001) TCGA-AN-A0XU-01 16 20486982 20486982 C T ACSM2A Missense_Mutation p.P329S 0.10 tolerated(0.11) probably_damaging(0.953) TCGA-AN-A0XU-01 16 20944829 20944829 C A DNAH3 Missense_Mutation p.V4000L 0.11 deleterious(0.03) benign(0.346) TCGA-AN-A0XU-01 16 27078668 27078668 C G C16orf82 RNA 0.27 TCGA-AN-A0XU-01 16 2818050 2818050 G A SRRM2 Silent p.G2507G 0.70 TCGA-AN-A0XU-01 16 30528336 30528336 C A ITGAL Missense_Mutation p.L969M 0.24 deleterious(0.04) benign(0.411) TCGA-AN-A0XU-01 16 46732124 46732124 G T ORC6 3'UTR 0.29 TCGA-AN-A0XU-01 16 58021301 58021301 C T TEPP Missense_Mutation p.R290C 0.41 deleterious(0) probably_damaging(0.992) TCGA-AN-A0XU-01 16 81232651 81232651 C G PKD1L2 Missense_Mutation p.V387L 0.22 tolerated(0.13) possibly_damaging(0.527) TCGA-AN-A0XU-01 16 84449123 84449123 C G ATP2C2 Missense_Mutation p.R184G 0.30 tolerated(0.05) benign(0.035) TCGA-AN-A0XU-01 17 2966511 2966511 G A OR1D5 Missense_Mutation p.H131Y 0.78 deleterious(0.04) benign(0.068) TCGA-AN-A0XU-01 17 30357733 30357733 T - LRRC37B Frame_Shift_Del p.L629Cfs*4 0.08 TCGA-AN-A0XU-01 17 3119462 3119462 C T OR1A1 Missense_Mutation p.P183L 0.85 deleterious(0.03) benign(0.141) TCGA-AN-A0XU-01 17 41201181 41201181 C A BRCA1 Missense_Mutation p.G1809V 0.25 deleterious(0) probably_damaging(0.966) TCGA-AN-A0XU-01 17 42254963 42254973 CTTTTGACCCC - ASB16 Intron 0.39 TCGA-AN-A0XU-01 17 46622059 46622059 G A HOXB2 Missense_Mutation p.A72V 0.27 tolerated(0.07) benign(0.118) TCGA-AN-A0XU-01 17 46629421 46629421 G A HOXB3 Missense_Mutation p.T139M 0.32 deleterious(0) possibly_damaging(0.677) TCGA-AN-A0XU-01 17 57288018 57288018 C A SMG8 Nonsense_Mutation p.Y202* 0.17 TCGA-AN-A0XU-01 17 61619620 61619620 G T KCNH6 Missense_Mutation p.G658V 0.81 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XU-01 17 67045450 67045450 T G ABCA9 Missense_Mutation p.K93T 0.08 deleterious(0.03) possibly_damaging(0.483) TCGA-AN-A0XU-01 17 7577107 7577116 ACAGGCACAA - TP53 Frame_Shift_Del p.C275Lfs*67 0.57 TCGA-AN-A0XU-01 17 80282641 80282641 C A SECTM1 Nonsense_Mutation p.E74* 0.27 TCGA-AN-A0XU-01 18 39542488 39542488 C T PIK3C3 Missense_Mutation p.P98S 0.23 tolerated(1) benign(0.001) TCGA-AN-A0XU-01 18 44104856 44104856 C T LOXHD1 Missense_Mutation p.A408T 0.28 deleterious(0.01) probably_damaging(0.965) TCGA-AN-A0XU-01 18 5397152 5397152 G C EPB41L3 Missense_Mutation p.Q916E 0.61 tolerated(0.26) benign(0.04) TCGA-AN-A0XU-01 19 13084353 13084353 G C DAND5 Missense_Mutation p.V159L 0.13 tolerated(0.14) benign(0.039) TCGA-AN-A0XU-01 19 20829141 20829147 TGTGCAG - ZNF626 Frame_Shift_Del p.T23Sfs*8 0.33 TCGA-AN-A0XU-01 19 30505914 30505914 T A URI1 Missense_Mutation p.S516T 0.29 tolerated(0.15) benign(0.41) TCGA-AN-A0XU-01 19 35625006 35625006 G A LGI4 Missense_Mutation p.S58L 0.11 deleterious(0.02) probably_damaging(0.916) TCGA-AN-A0XU-01 19 36593726 36593737 TCCTCTCAAGCC - WDR62 In_Frame_Del p.L1104_L1107del 0.19 TCGA-AN-A0XU-01 19 46663943 46663943 A T IGFL2 Missense_Mutation p.E60V 0.22 deleterious(0) probably_damaging(0.991) TCGA-AN-A0XU-01 19 46973059 46973059 C T PNMAL1 Missense_Mutation p.E412K 0.89 deleterious(0.02) possibly_damaging(0.502) TCGA-AN-A0XU-01 19 53014344 53014344 G A ZNF578 Missense_Mutation p.G237D 0.07 tolerated(0.14) benign(0.059) TCGA-AN-A0XU-01 19 5679407 5679407 G C C19orf70 Missense_Mutation p.L70V 0.26 tolerated(0.13) possibly_damaging(0.599) TCGA-AN-A0XU-01 19 57839308 57839308 G C ZNF543 Missense_Mutation p.D160H 0.49 tolerated(0.58) benign(0.005) TCGA-AN-A0XU-01 1 1153907 1153924 GTCTTTCACCCAGTTGTC - SDF4 In_Frame_Del p.D276_D281del 0.28 TCGA-AN-A0XU-01 1 119964794 119964794 T C HSD3B2 Missense_Mutation p.Y224H 0.30 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XU-01 1 120298179 120298179 T A HMGCS2 Missense_Mutation p.D353V 0.05 deleterious(0) benign(0.431) TCGA-AN-A0XU-01 1 145527965 145527965 G T ITGA10 Missense_Mutation p.D68Y 0.45 tolerated(0.21) possibly_damaging(0.732) TCGA-AN-A0XU-01 1 152278572 152278572 G A FLG Silent p.P2930P 0.27 TCGA-AN-A0XU-01 1 153955065 153955065 C T RAB13 Silent p.E142E 0.15 TCGA-AN-A0XU-01 1 160924178 160924178 T G ITLN2 Silent p.A26A 0.13 TCGA-AN-A0XU-01 1 16199441 16199442 AG - SPEN Frame_Shift_Del p.D73Pfs*6 0.35 TCGA-AN-A0XU-01 1 163318796 163318796 C G NUF2 Missense_Mutation p.Q396E 0.12 tolerated(0.19) benign(0.002) TCGA-AN-A0XU-01 1 178514978 178514978 C G C1ORF220 Missense_Mutation p.L122V 0.48 possibly_damaging(0.567) TCGA-AN-A0XU-01 1 182368761 182368761 A G TEDDM1 3'UTR 0.36 TCGA-AN-A0XU-01 1 248458366 248458366 A T OR2T12 Missense_Mutation p.I172N 0.24 deleterious(0) probably_damaging(0.926) TCGA-AN-A0XU-01 1 26800500 26800500 T C HMGN2 Intron 0.22 TCGA-AN-A0XU-01 1 38489327 38489327 T C UTP11L 3'UTR 0.23 TCGA-AN-A0XU-01 1 46072992 46072992 G C NASP Splice_Site p.X137_splice 0.15 TCGA-AN-A0XU-01 1 89613451 89613451 C A GBP7 Missense_Mutation p.E388D 0.21 tolerated(0.24) benign(0.007) TCGA-AN-A0XU-01 1 94354389 94354389 G C GCLM 3'UTR 0.29 TCGA-AN-A0XU-01 20 58467482 58467482 C A SYCP2 Splice_Site p.X643_splice 0.17 TCGA-AN-A0XU-01 21 37612131 37612131 G A DOPEY2 Nonsense_Mutation p.W982* 0.40 TCGA-AN-A0XU-01 22 16279204 16279204 C A POTEH Missense_Mutation p.R340I 0.06 tolerated(0.07) benign(0.02) TCGA-AN-A0XU-01 22 25621000 25621000 G T CRYBB2 Missense_Mutation p.G57V 0.11 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XU-01 22 26895573 26895573 G A TFIP11 Nonsense_Mutation p.Q276* 0.14 TCGA-AN-A0XU-01 22 38694802 38694802 T A CSNK1E Missense_Mutation p.M292L 0.24 tolerated_low_confidence(0.25) benign(0) TCGA-AN-A0XU-01 22 40662003 40662003 G A TNRC6B Missense_Mutation p.R590H 0.36 deleterious(0.05) probably_damaging(0.997) TCGA-AN-A0XU-01 2 119727689 119727689 G A MARCO Splice_Site p.X67_splice 0.41 TCGA-AN-A0XU-01 2 149864578 149864578 G C KIF5C Missense_Mutation p.K849N 0.35 deleterious(0) probably_damaging(0.938) TCGA-AN-A0XU-01 2 166032862 166032862 G A SCN3A Missense_Mutation p.R15C 0.51 deleterious(0.02) possibly_damaging(0.7) TCGA-AN-A0XU-01 2 168107363 168107363 C A XIRP2 Missense_Mutation p.P3154Q 0.30 possibly_damaging(0.812) TCGA-AN-A0XU-01 2 179485829 179485829 C G TTN Missense_Mutation p.E15206Q 0.10 TCGA-AN-A0XU-01 2 179615628 179615628 G A TTN Intron 0.08 TCGA-AN-A0XU-01 2 191927626 191927626 C A STAT4 Missense_Mutation p.S268I 0.03 deleterious(0.03) probably_damaging(0.994) TCGA-AN-A0XU-01 2 192820999 192820999 A G TMEFF2 Missense_Mutation p.M284T 0.10 tolerated(0.47) benign(0.001) TCGA-AN-A0XU-01 2 206631527 206631527 G T NRP2 Missense_Mutation p.G809C 0.28 tolerated(0.08) possibly_damaging(0.75) TCGA-AN-A0XU-01 2 223065857 223065857 T C PAX3 3'UTR 0.21 TCGA-AN-A0XU-01 2 230678609 230678609 G A TRIP12 Silent p.L607L 0.40 TCGA-AN-A0XU-01 2 234172686 234172686 A T ATG16L1 Missense_Mutation p.R122W 0.19 deleterious(0) probably_damaging(0.942) TCGA-AN-A0XU-01 2 32466081 32466109 ATATGAGAACAGAAATCTGACCTAGTTTT - NLRC4 Splice_Site p.X781_splice 0.26 TCGA-AN-A0XU-01 2 39934291 39934291 C A TMEM178A Missense_Mutation p.T206N 0.22 deleterious(0.01) possibly_damaging(0.903) TCGA-AN-A0XU-01 2 74889932 74889932 G A SEMA4F Missense_Mutation p.R177Q 0.50 tolerated(0.12) benign(0.301) TCGA-AN-A0XU-01 2 85051112 85051126 CCGGAGTCGCGGCCT - TRABD2A In_Frame_Del p.R380_R384del 0.43 TCGA-AN-A0XU-01 2 85777243 85777243 C G GGCX Silent p.L697L 0.29 TCGA-AN-A0XU-01 3 136078104 136078104 T A STAG1 Missense_Mutation p.N941I 0.09 tolerated(0.12) benign(0.359) TCGA-AN-A0XU-01 3 138183231 138183231 G C ESYT3 Missense_Mutation p.Q320H 0.20 deleterious(0.02) possibly_damaging(0.663) TCGA-AN-A0XU-01 3 149684305 149684305 C G PFN2 Missense_Mutation p.A132P 0.04 deleterious(0.02) probably_damaging(0.992) TCGA-AN-A0XU-01 3 149684306 149684306 C A PFN2 Missense_Mutation p.M131I 0.04 deleterious(0.04) benign(0.068) TCGA-AN-A0XU-01 3 170819300 170819300 C T TNIK Silent p.E843E 0.37 TCGA-AN-A0XU-01 3 186953991 186953991 C T MASP1 Silent p.L556L 0.16 TCGA-AN-A0XU-01 3 42733450 42733450 G T KLHL40 Missense_Mutation p.V611L 0.75 deleterious(0.03) benign(0.175) TCGA-AN-A0XU-01 3 81635276 81635276 T G GBE1 Silent p.R434R 0.22 TCGA-AN-A0XU-01 4 144449812 144449812 A G SMARCA5 Missense_Mutation p.H345R 0.09 deleterious(0.04) possibly_damaging(0.836) TCGA-AN-A0XU-01 4 177100720 177100720 A G WDR17 Missense_Mutation p.N1320S 0.18 tolerated(0.12) probably_damaging(0.989) TCGA-AN-A0XU-01 4 248578 248578 G C ZNF876P RNA 0.33 TCGA-AN-A0XU-01 4 59361 59361 C A ZNF595 Silent p.S14S 0.08 TCGA-AN-A0XU-01 4 74005302 74005302 T C ANKRD17 Missense_Mutation p.M1011V 0.08 possibly_damaging(0.693) TCGA-AN-A0XU-01 5 114603600 114603600 C G CCDC112 Missense_Mutation p.W521C 0.38 deleterious(0) probably_damaging(1) TCGA-AN-A0XU-01 5 140557576 140557576 A T PCDHB8 5'UTR 0.09 TCGA-AN-A0XU-01 5 33989557 33989557 A G AMACR Missense_Mutation p.W264R 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-AN-A0XU-01 5 54329835 54329835 G A GZMK 3'UTR 0.64 TCGA-AN-A0XU-01 6 121577341 121577341 C G TBC1D32 Silent p.V608V 0.62 TCGA-AN-A0XU-01 6 121768943 121768943 A G GJA1 Missense_Mutation p.Q317R 0.14 tolerated(0.25) probably_damaging(0.961) TCGA-AN-A0XU-01 6 135787470 135787470 A T AHI1 Silent p.T77T 0.46 TCGA-AN-A0XU-01 6 154762480 154762480 G A CNKSR3 Silent p.V151V 0.19 TCGA-AN-A0XU-01 6 5000125 5000125 C A RPP40 Missense_Mutation p.L117F 0.73 tolerated(0.08) probably_damaging(0.987) TCGA-AN-A0XU-01 6 69349109 69349109 C T BAI3 Missense_Mutation p.S181L 0.14 tolerated(0.28) benign(0) TCGA-AN-A0XU-01 6 74320122 74320122 C T SLC17A5 Splice_Site p.X420_splice 0.21 TCGA-AN-A0XU-01 6 87953320 87953320 A G ZNF292 Missense_Mutation p.Y290C 0.14 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XU-01 6 88216123 88216123 G T SLC35A1 Silent p.G177G 0.16 TCGA-AN-A0XU-01 7 105283455 105283455 G A ATXN7L1 Missense_Mutation p.S231L 0.23 tolerated(0.17) benign(0.02) TCGA-AN-A0XU-01 7 128496688 128496688 C G FLNC Silent p.V2456V 0.68 TCGA-AN-A0XU-01 7 142658026 142658026 C T KEL Missense_Mutation p.R130Q 0.18 tolerated(0.16) benign(0.086) TCGA-AN-A0XU-01 7 157046642 157046657 TCCCAGGTAGTTGAAC - UBE3C Splice_Site p.X899_splice 0.47 TCGA-AN-A0XU-01 7 30791789 30791789 G A INMT Missense_Mutation p.G8D 0.35 tolerated(0.1) possibly_damaging(0.73) TCGA-AN-A0XU-01 7 44873965 44873965 C G H2AFV 3'UTR 0.19 TCGA-AN-A0XU-01 7 88423587 88423588 TG ACATTTATAAACATTTATA C7orf62 Frame_Shift_Ins p.M224Ifs*13 0.32 TCGA-AN-A0XU-01 7 93540097 93540097 T G GNGT1 Intron 0.24 TCGA-AN-A0XU-01 7 99016921 99016921 G C PTCD1 3'Flank 0.64 TCGA-AN-A0XU-01 8 124265811 124265819 GTGCTTCAG - ZHX1 In_Frame_Del p.L790_H792del 0.24 TCGA-AN-A0XU-01 8 145625789 145625789 G T CPSF1 Missense_Mutation p.P262H 0.32 deleterious(0) probably_damaging(1) TCGA-AN-A0XU-01 8 43216206 43216206 G A POTEA RNA 0.39 TCGA-AN-A0XU-01 9 100136864 100136864 G A CCDC180 Missense_Mutation p.R1591Q 0.21 deleterious(0) benign(0.417) TCGA-AN-A0XU-01 X 151935749 151935749 C T MAGEA3 Missense_Mutation p.V140I 0.64 tolerated(1) benign(0.002) TCGA-AN-A0XU-01 X 21627269 21627269 T G CNKSR2 Missense_Mutation p.H742Q 0.52 tolerated(0.34) benign(0.028) TCGA-AN-A0XU-01 X 99551519 99551519 G T PCDH19 Missense_Mutation p.P1068H 0.74 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-AN-A0XV-01 10 5930026 5930026 G A ANKRD16 Missense_Mutation p.P107S 0.35 deleterious(0.04) probably_damaging(0.913) TCGA-AN-A0XV-01 11 103908787 103908787 C T DDI1 3'UTR 0.25 TCGA-AN-A0XV-01 11 129306679 129306679 C T BARX2 Missense_Mutation p.S74L 0.36 deleterious(0) probably_damaging(0.976) TCGA-AN-A0XV-01 12 121132627 121132627 G T MLEC Missense_Mutation p.V139L 0.31 deleterious(0) possibly_damaging(0.899) TCGA-AN-A0XV-01 12 123751751 123751751 G A CDK2AP1 Missense_Mutation p.P45L 0.11 deleterious(0) probably_damaging(0.915) TCGA-AN-A0XV-01 12 7842389 7842389 C T GDF3 3'UTR 0.31 TCGA-AN-A0XV-01 13 52661583 52661583 C A NEK5 Missense_Mutation p.R428L 0.46 deleterious(0) probably_damaging(0.961) TCGA-AN-A0XV-01 15 63419657 63419657 A T LACTB Missense_Mutation p.M241L 0.04 tolerated(0.98) benign(0.006) TCGA-AN-A0XV-01 16 22545853 22545853 C G NPIPB5 Missense_Mutation p.R517G 0.09 tolerated_low_confidence(0.35) possibly_damaging(0.871) TCGA-AN-A0XV-01 16 47252799 47252799 C A ITFG1 Missense_Mutation p.G478V 0.33 deleterious(0) possibly_damaging(0.629) TCGA-AN-A0XV-01 16 56388797 56388797 C T RP11-441F2.5 5'Flank 0.33 TCGA-AN-A0XV-01 17 5336138 5336138 A G RPAIN 3'Flank 0.50 TCGA-AN-A0XV-01 19 4956762 4956762 A G UHRF1 RNA 0.31 TCGA-AN-A0XV-01 1 155448206 155448206 G A ASH1L Silent p.H1485H 0.06 TCGA-AN-A0XV-01 1 220340879 220340879 A G RAB3GAP2 Missense_Mutation p.V982A 0.30 tolerated(0.74) benign(0.001) TCGA-AN-A0XV-01 1 46743834 46743834 C A RAD54L Missense_Mutation p.H708Q 0.42 deleterious(0) probably_damaging(1) TCGA-AN-A0XV-01 1 62274159 62274160 AC - INADL Frame_Shift_Del p.Q549Dfs*4 0.27 TCGA-AN-A0XV-01 20 3127664 3127664 A C FASTKD5 Missense_Mutation p.C685G 0.44 tolerated(0.39) benign(0.001) TCGA-AN-A0XV-01 21 22782691 22782691 A - NCAM2 Frame_Shift_Del p.I432Ffs*8 0.18 TCGA-AN-A0XV-01 2 108604635 108604635 G C SLC5A7 Silent p.L8L 0.24 TCGA-AN-A0XV-01 2 231927025 231927025 G - PSMD1 Frame_Shift_Del p.V42* 0.11 TCGA-AN-A0XV-01 2 72361955 72361955 C T CYP26B1 Missense_Mutation p.A266T 0.33 deleterious(0) benign(0.258) TCGA-AN-A0XV-01 3 14861440 14861440 G A FGD5 Missense_Mutation p.G288R 0.33 tolerated_low_confidence(0.06) benign(0.125) TCGA-AN-A0XV-01 3 57139978 57139978 G A IL17RD Silent p.F218F 0.26 TCGA-AN-A0XV-01 4 109740436 109740436 A G COL25A1 Missense_Mutation p.L632P 0.23 tolerated(0.14) benign(0.126) TCGA-AN-A0XV-01 4 110673630 110673630 C T CFI Missense_Mutation p.D312N 0.04 tolerated(0.18) benign(0.071) TCGA-AN-A0XV-01 4 129043387 129043387 G C LARP1B Intron 0.23 TCGA-AN-A0XV-01 4 24542562 24542562 A T DHX15 Missense_Mutation p.Y499N 0.11 deleterious(0) possibly_damaging(0.684) TCGA-AN-A0XV-01 5 122685675 122685675 G A CEP120 Nonsense_Mutation p.R897* 0.28 TCGA-AN-A0XV-01 5 16701598 16701598 C G MYO10 Missense_Mutation p.S969T 0.21 tolerated_low_confidence(0.54) benign(0) TCGA-AN-A0XV-01 5 167545418 167545418 C T TENM2 Silent p.C645C 0.22 TCGA-AN-A0XV-01 5 41052602 41052602 C T MROH2B Missense_Mutation p.V399I 0.29 tolerated(1) benign(0.005) TCGA-AN-A0XV-01 5 7867647 7867647 C T FASTKD3 Missense_Mutation p.A184T 0.13 tolerated(0.05) possibly_damaging(0.601) TCGA-AN-A0XV-01 6 105219210 105219210 T A HACE1 Missense_Mutation p.N690I 0.22 deleterious(0) probably_damaging(0.998) TCGA-AN-A0XV-01 6 154412132 154412132 G T OPRM1 Missense_Mutation p.W323L 0.30 deleterious(0) probably_damaging(0.996) TCGA-AN-A0XV-01 6 2124961 2124961 C G GMDS Missense_Mutation p.G36A 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-AN-A0XV-01 6 29055016 29055016 C A OR2B3 Nonsense_Mutation p.E4* 0.26 TCGA-AN-A0XV-01 7 151945474 151945474 G C KMT2C Nonsense_Mutation p.S682* 0.30 TCGA-AN-A0XV-01 7 26224284 26224284 T C NFE2L3 Silent p.C322C 0.15 TCGA-AN-A0XV-01 8 100568750 100568750 G A VPS13B Silent p.L1631L 0.04 TCGA-AN-A0XV-01 8 101585949 101585949 G C SNX31 3'UTR 0.04 TCGA-AN-A0XV-01 8 101586052 101586052 G C SNX31 3'UTR 0.05 TCGA-AN-A0XV-01 8 124117532 124117532 C G TBC1D31 Missense_Mutation p.P346R 0.09 deleterious(0) possibly_damaging(0.466) TCGA-AN-A0XV-01 8 125132057 125132057 G A FER1L6 3'UTR 0.17 TCGA-AN-A0XV-01 8 87559937 87559937 A C CPNE3 Splice_Site p.X274_splice 0.11 TCGA-AN-A0XV-01 9 34552251 34552251 G A CNTFR Silent p.S342S 0.23 TCGA-AN-A0XV-01 X 117805009 117805009 A G DOCK11 Silent p.E1700E 0.04 TCGA-AN-A0XW-01 10 103221807 103221807 C G BTRC Missense_Mutation p.L76V 0.05 tolerated_low_confidence(0.19) benign(0.002) TCGA-AN-A0XW-01 10 124380755 124380755 C T DMBT1 Missense_Mutation p.R1694W 0.26 tolerated(0.2) benign(0.127) TCGA-AN-A0XW-01 10 15115242 15115242 C T OLAH 3'UTR 0.26 TCGA-AN-A0XW-01 10 32322814 32322814 C A KIF5B Nonsense_Mutation p.E422* 0.22 TCGA-AN-A0XW-01 10 45499194 45499194 C T ZNF22 Silent p.L126L 0.13 TCGA-AN-A0XW-01 10 75525882 75525882 G C SEC24C Missense_Mutation p.M507I 0.06 tolerated(0.08) benign(0.297) TCGA-AN-A0XW-01 10 89692900 89692900 G C PTEN Missense_Mutation p.K128N 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-AN-A0XW-01 11 1092240 1092240 G A MUC2 Silent p.Q1353Q 0.25 TCGA-AN-A0XW-01 11 114453611 114453611 C G NXPE4 Missense_Mutation p.E77Q 0.10 tolerated(0.06) benign(0.019) TCGA-AN-A0XW-01 11 116732606 116732606 G A SIK3 Nonsense_Mutation p.Q650* 0.30 TCGA-AN-A0XW-01 11 123901064 123901064 C T OR10G8 Silent p.I245I 0.39 TCGA-AN-A0XW-01 11 33790504 33790504 G C FBXO3 Missense_Mutation p.S84C 0.27 tolerated(0.08) possibly_damaging(0.63) TCGA-AN-A0XW-01 11 36512023 36512023 G C TRAF6 Missense_Mutation p.Q312E 0.16 tolerated(0.08) probably_damaging(0.966) TCGA-AN-A0XW-01 11 36514179 36514179 C G TRAF6 Splice_Site p.X227_splice 0.05 TCGA-AN-A0XW-01 11 47828648 47828648 G C NUP160 Missense_Mutation p.S807C 0.17 deleterious(0) possibly_damaging(0.832) TCGA-AN-A0XW-01 11 56143234 56143234 G C OR8U1 Missense_Mutation p.L45F 0.04 deleterious(0.02) probably_damaging(0.993) TCGA-AN-A0XW-01 11 57137374 57137374 G A P2RX3 Silent p.L366L 0.11 TCGA-AN-A0XW-01 11 59245488 59245488 G C OR4D10 Missense_Mutation p.E196Q 0.24 deleterious(0.04) possibly_damaging(0.661) TCGA-AN-A0XW-01 11 59596936 59596936 G C GIF 3'UTR 0.16 TCGA-AN-A0XW-01 11 67077004 67077004 G C SSH3 Missense_Mutation p.E400Q 0.16 tolerated(0.27) probably_damaging(0.949) TCGA-AN-A0XW-01 11 71807817 71807817 G A LRTOMT Intron 0.19 TCGA-AN-A0XW-01 11 76701601 76701601 G C ACER3 Missense_Mutation p.E141Q 0.03 tolerated(0.36) benign(0.014) TCGA-AN-A0XW-01 11 76928275 76928275 C G GDPD4 3'UTR 0.04 TCGA-AN-A0XW-01 11 77412200 77412200 C G RSF1 Missense_Mutation p.E692Q 0.03 deleterious(0.03) benign(0.179) TCGA-AN-A0XW-01 11 77639390 77639390 C G INTS4 Missense_Mutation p.E457Q 0.04 tolerated(0.11) benign(0.154) TCGA-AN-A0XW-01 11 9192510 9192510 C G DENND5A Intron 0.18 TCGA-AN-A0XW-01 12 100451418 100451418 C T UHRF1BP1L Missense_Mutation p.D1119N 0.23 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 12 102153831 102153831 C T GNPTAB Missense_Mutation p.E1076K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-AN-A0XW-01 12 102872423 102872423 G T IGF1 Intron 0.23 TCGA-AN-A0XW-01 12 10460676 10460676 C T KLRD1 5'UTR 0.18 TCGA-AN-A0XW-01 12 108961164 108961164 G C ISCU Intron 0.18 TCGA-AN-A0XW-01 12 109311821 109311821 C T SVOP Missense_Mutation p.E385K 0.07 deleterious(0) benign(0.212) TCGA-AN-A0XW-01 12 117603392 117603392 C T FBXO21 Silent p.L408L 0.27 TCGA-AN-A0XW-01 12 121157824 121157824 G A UNC119B Missense_Mutation p.G249R 0.10 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 12 124144425 124144425 C T GTF2H3 Silent p.F256F 0.27 TCGA-AN-A0XW-01 12 12794948 12794948 G A CREBL2 3'UTR 0.05 TCGA-AN-A0XW-01 12 129563234 129563234 T A TMEM132D Nonsense_Mutation p.K654* 0.19 TCGA-AN-A0XW-01 12 132249183 132249183 G C SFSWAP Missense_Mutation p.E635Q 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-AN-A0XW-01 12 15097754 15097754 G A ARHGDIB Missense_Mutation p.S121L 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-AN-A0XW-01 12 18499655 18499655 G C PIK3C2G Missense_Mutation p.D504H 0.24 deleterious(0) probably_damaging(0.98) TCGA-AN-A0XW-01 12 19467760 19467760 G A PLEKHA5 Missense_Mutation p.E684K 0.06 deleterious(0.01) possibly_damaging(0.621) TCGA-AN-A0XW-01 12 21712090 21712090 C T GYS2 Missense_Mutation p.D415N 0.07 tolerated(0.18) probably_damaging(0.993) TCGA-AN-A0XW-01 12 27877070 27877070 C T MRPS35 Missense_Mutation p.S158L 0.21 tolerated(0.34) benign(0.18) TCGA-AN-A0XW-01 12 32735243 32735243 G C FGD4 Missense_Mutation p.D148H 0.08 deleterious_low_confidence(0.03) benign(0.005) TCGA-AN-A0XW-01 12 52778990 52778990 C G KRT84 Missense_Mutation p.G127A 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-AN-A0XW-01 12 52883849 52883849 C T KRT6A Missense_Mutation p.E361K 0.31 deleterious(0.01) benign(0.343) TCGA-AN-A0XW-01 12 52943869 52943869 C T KRT71 Silent p.V200V 0.24 TCGA-AN-A0XW-01 12 56522358 56522358 C T ESYT1 Silent p.L85L 0.15 TCGA-AN-A0XW-01 12 80626730 80626730 C G OTOGL Missense_Mutation p.L215V 0.23 tolerated(0.05) probably_damaging(0.998) TCGA-AN-A0XW-01 12 83289848 83289848 C T TMTC2 Silent p.L302L 0.24 TCGA-AN-A0XW-01 12 93172888 93172888 G C EEA1 Intron 0.25 TCGA-AN-A0XW-01 12 95479548 95479548 G A FGD6 Intron 0.26 TCGA-AN-A0XW-01 12 95918527 95918527 G C USP44 Silent p.L554L 0.06 TCGA-AN-A0XW-01 13 108518200 108518200 C T FAM155A Missense_Mutation p.D249N 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-AN-A0XW-01 13 109777624 109777624 G A MYO16 Missense_Mutation p.D1212N 0.24 deleterious(0.04) possibly_damaging(0.656) TCGA-AN-A0XW-01 13 114781703 114781703 C G RASA3 Missense_Mutation p.L417F 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-AN-A0XW-01 13 25827981 25827981 G A MTMR6 Missense_Mutation p.L423F 0.30 deleterious(0.04) benign(0.088) TCGA-AN-A0XW-01 13 32721440 32721440 C T FRY Nonsense_Mutation p.R401* 0.36 TCGA-AN-A0XW-01 13 32907194 32907194 C A BRCA2 Missense_Mutation p.P527T 0.08 tolerated(0.19) benign(0.037) TCGA-AN-A0XW-01 13 36888497 36888497 C G SPG20 Missense_Mutation p.Q450H 0.10 tolerated(1) benign(0.01) TCGA-AN-A0XW-01 13 46124418 46124418 G A FAM194B Missense_Mutation p.P481S 0.04 tolerated(0.16) possibly_damaging(0.669) TCGA-AN-A0XW-01 13 47409694 47409694 C A HTR2A Missense_Mutation p.D232Y 0.22 deleterious(0.01) possibly_damaging(0.837) TCGA-AN-A0XW-01 13 73491243 73491244 - T PIBF1 Frame_Shift_Ins p.S559Ffs*7 0.27 TCGA-AN-A0XW-01 13 99042313 99042313 G A FARP1 Missense_Mutation p.E320K 0.07 deleterious(0.02) possibly_damaging(0.574) TCGA-AN-A0XW-01 14 101347967 101347967 C A RTL1 Missense_Mutation p.M1053I 0.20 tolerated_low_confidence(0.27) benign(0.001) TCGA-AN-A0XW-01 14 22932789 22932789 G A TRDC Missense_Mutation p.E102K 0.35 tolerated(0.62) benign(0.004) TCGA-AN-A0XW-01 14 23816808 23816808 C T SLC22A17 Silent p.V359V 0.19 TCGA-AN-A0XW-01 14 24003176 24003176 G C ZFHX2 Silent p.L453L 0.25 TCGA-AN-A0XW-01 14 51289902 51289902 C T NIN Intron 0.22 TCGA-AN-A0XW-01 14 54947649 54947649 G A GMFB Nonsense_Mutation p.Q76* 0.14 TCGA-AN-A0XW-01 14 56116507 56116507 C T KTN1 Missense_Mutation p.S794F 0.14 deleterious(0.01) possibly_damaging(0.828) TCGA-AN-A0XW-01 14 58766529 58766529 G C ARID4A 5'UTR 0.36 TCGA-AN-A0XW-01 14 63473099 63473099 G A KCNH5 Silent p.L97L 0.23 TCGA-AN-A0XW-01 14 68156953 68156953 G A RDH11 Nonsense_Mutation p.Q214* 0.10 TCGA-AN-A0XW-01 14 75537978 75537978 G C ZC2HC1C Silent p.L234L 0.15 TCGA-AN-A0XW-01 14 90778838 90778838 C G NRDE2 Missense_Mutation p.E153Q 0.19 deleterious(0.01) possibly_damaging(0.905) TCGA-AN-A0XW-01 14 94038296 94038296 C G UNC79 Silent p.L427L 0.07 TCGA-AN-A0XW-01 14 94912879 94912879 C A SERPINA11 Nonsense_Mutation p.E236* 0.13 TCGA-AN-A0XW-01 15 22836070 22836070 G A TUBGCP5 Missense_Mutation p.E70K 0.15 deleterious(0.01) benign(0.215) TCGA-AN-A0XW-01 15 26866582 26866582 C T GABRB3 Missense_Mutation p.D114N 0.26 deleterious(0.04) probably_damaging(1) TCGA-AN-A0XW-01 15 29561244 29561244 G A NDNL2 Silent p.L222L 0.14 TCGA-AN-A0XW-01 15 33928729 33928729 C T RYR3 Silent p.F1178F 0.26 TCGA-AN-A0XW-01 15 42057208 42057208 C G MGA Silent p.L2623L 0.20 TCGA-AN-A0XW-01 15 44105315 44105315 C G MFAP1 Missense_Mutation p.E253Q 0.10 tolerated(0.18) benign(0.173) TCGA-AN-A0XW-01 15 48059233 48059233 G C SEMA6D Splice_Site p.X570_splice 0.21 TCGA-AN-A0XW-01 15 51772282 51772282 G C DMXL2 Missense_Mutation p.L2207V 0.06 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 15 52901363 52901363 C G FAM214A Missense_Mutation p.R583T 0.15 deleterious(0.01) possibly_damaging(0.461) TCGA-AN-A0XW-01 15 64499783 64499783 C T CSNK1G1 Silent p.R230R 0.08 TCGA-AN-A0XW-01 15 70959869 70959869 C G UACA Missense_Mutation p.E1052Q 0.30 deleterious(0.01) possibly_damaging(0.653) TCGA-AN-A0XW-01 15 71125155 71125155 C G LARP6 Missense_Mutation p.E238Q 0.09 deleterious(0.01) possibly_damaging(0.696) TCGA-AN-A0XW-01 15 72545819 72545819 C G PARP6 Missense_Mutation p.Q406H 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-AN-A0XW-01 15 74324915 74324915 C T PML Silent p.P419P 0.29 TCGA-AN-A0XW-01 15 78922023 78922023 C T CHRNB4 Silent p.G208G 0.06 TCGA-AN-A0XW-01 15 99478099 99478099 G A IGF1R Missense_Mutation p.M1001I 0.10 tolerated(0.44) benign(0.023) TCGA-AN-A0XW-01 16 14397846 14397846 G C MIR193B RNA 0.10 TCGA-AN-A0XW-01 16 20362083 20362083 C G UMOD 5'UTR 0.15 TCGA-AN-A0XW-01 16 21078621 21078621 C T DNAH3 Silent p.K1167K 0.12 TCGA-AN-A0XW-01 16 25251806 25251806 C T ZKSCAN2 Silent p.K745K 0.21 TCGA-AN-A0XW-01 16 2651308 2651308 G C PDPK1 3'UTR 0.22 TCGA-AN-A0XW-01 16 3558457 3558457 C G CLUAP1 Missense_Mutation p.L130V 0.19 tolerated(0.18) benign(0.145) TCGA-AN-A0XW-01 16 47189590 47189590 C G ITFG1 3'UTR 0.27 TCGA-AN-A0XW-01 16 53190945 53190945 G C CHD9 Missense_Mutation p.R315T 0.06 benign(0.004) TCGA-AN-A0XW-01 16 53191163 53191163 G C CHD9 Missense_Mutation p.E388Q 0.06 possibly_damaging(0.825) TCGA-AN-A0XW-01 16 69942763 69942763 C T WWP2 Intron 0.21 TCGA-AN-A0XW-01 16 70969882 70969882 C T HYDIN Missense_Mutation p.M2377I 0.19 benign(0.001) TCGA-AN-A0XW-01 16 73126993 73126993 C T HCCAT5 RNA 0.14 TCGA-AN-A0XW-01 16 73127016 73127016 C G HCCAT5 RNA 0.14 TCGA-AN-A0XW-01 16 8868872 8868872 G A ABAT Missense_Mutation p.M360I 0.13 tolerated(0.32) benign(0.004) TCGA-AN-A0XW-01 17 10366411 10366411 G C MYH4 Silent p.L300L 0.25 TCGA-AN-A0XW-01 17 11522991 11522991 C G DNAH9 Missense_Mutation p.L415V 0.32 benign(0.05) TCGA-AN-A0XW-01 17 18205698 18205698 C A TOP3A Nonsense_Mutation p.E232* 0.35 TCGA-AN-A0XW-01 17 27958422 27958422 C G SSH2 Missense_Mutation p.E1237Q 0.07 deleterious(0.01) benign(0.126) TCGA-AN-A0XW-01 17 29667654 29667654 C G NF1 Missense_Mutation p.F2351L 0.30 tolerated(0.08) probably_damaging(0.914) TCGA-AN-A0XW-01 17 40717993 40717993 C G COASY 3'UTR 0.30 TCGA-AN-A0XW-01 17 41362092 41362092 G A NBR1 Silent p.%3D 0.32 TCGA-AN-A0XW-01 17 43214125 43214125 G A ACBD4 Missense_Mutation p.M92I 0.56 tolerated(0.08) benign(0.054) TCGA-AN-A0XW-01 17 45993632 45993632 G A SP2 Silent p.R65R 0.06 TCGA-AN-A0XW-01 17 46928958 46928958 G C CALCOCO2 Missense_Mutation p.E248Q 0.09 tolerated(0.08) possibly_damaging(0.776) TCGA-AN-A0XW-01 17 47376246 47376246 G A ZNF652 Silent p.F450F 0.07 TCGA-AN-A0XW-01 17 48246746 48246746 C G SGCA Intron 0.12 TCGA-AN-A0XW-01 17 48557311 48557311 G C RSAD1 Missense_Mutation p.E114Q 0.11 deleterious(0.02) benign(0.417) TCGA-AN-A0XW-01 17 48650139 48650139 C G CACNA1G Nonsense_Mutation p.S324* 0.12 TCGA-AN-A0XW-01 17 48650450 48650450 C A CACNA1G Missense_Mutation p.F372L 0.03 tolerated(0.11) probably_damaging(0.993) TCGA-AN-A0XW-01 17 48941282 48941282 C T TOB1 Missense_Mutation p.E33K 0.09 deleterious(0) possibly_damaging(0.652) TCGA-AN-A0XW-01 17 49708738 49708738 C A CA10 3'UTR 0.10 TCGA-AN-A0XW-01 17 5084581 5084581 G A ZNF594 3'UTR 0.27 TCGA-AN-A0XW-01 17 53844774 53844774 G C PCTP Missense_Mutation p.D74H 0.04 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 17 54933939 54933939 C T DGKE Missense_Mutation p.H389Y 0.04 tolerated(0.06) probably_damaging(0.999) TCGA-AN-A0XW-01 17 56321423 56321423 T G LPO Missense_Mutation p.F49V 0.17 deleterious(0) probably_damaging(0.997) TCGA-AN-A0XW-01 17 56432137 56432137 C T RNF43 3'UTR 0.20 TCGA-AN-A0XW-01 17 57105841 57105841 C T TRIM37 Missense_Mutation p.R731K 0.06 tolerated_low_confidence(0.81) benign(0.002) TCGA-AN-A0XW-01 17 57758393 57758393 G C CLTC Missense_Mutation p.D1014H 0.03 tolerated(0.3) benign(0.063) TCGA-AN-A0XW-01 17 58144816 58144816 C G HEATR6 Missense_Mutation p.G406A 0.03 deleterious(0.01) possibly_damaging(0.693) TCGA-AN-A0XW-01 17 58144970 58144970 C T HEATR6 Missense_Mutation p.E355K 0.03 tolerated(0.8) benign(0.002) TCGA-AN-A0XW-01 17 58144980 58144980 C G HEATR6 Silent p.V351V 0.03 TCGA-AN-A0XW-01 17 60023841 60023841 C G MED13 Missense_Mutation p.M2171I 0.08 deleterious(0.05) possibly_damaging(0.48) TCGA-AN-A0XW-01 17 60040145 60040145 G A MED13 Missense_Mutation p.P1678S 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-AN-A0XW-01 17 66878053 66878053 C G ABCA8 Missense_Mutation p.K1259N 0.04 deleterious(0) probably_damaging(0.938) TCGA-AN-A0XW-01 17 72249933 72249933 G C TTYH2 Missense_Mutation p.E495D 0.14 deleterious(0) possibly_damaging(0.725) TCGA-AN-A0XW-01 17 72767888 72767888 C T NAT9 Missense_Mutation p.R200K 0.52 tolerated(0.09) benign(0.004) TCGA-AN-A0XW-01 17 73942738 73942738 C G ACOX1 3'UTR 0.11 TCGA-AN-A0XW-01 17 74004251 74004251 C G EVPL Missense_Mutation p.E1679Q 0.29 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 17 77711776 77711776 G A ENPP7 Silent p.P436P 0.50 TCGA-AN-A0XW-01 17 7834854 7834854 G C TRAPPC1 Missense_Mutation p.S47W 0.17 deleterious(0) probably_damaging(0.995) TCGA-AN-A0XW-01 17 79609453 79609453 G A TSPAN10 Silent p.E5E 0.45 TCGA-AN-A0XW-01 17 9804309 9804309 C G RCVRN Missense_Mutation p.D164H 0.05 deleterious(0.01) possibly_damaging(0.747) TCGA-AN-A0XW-01 18 12836858 12836858 C G PTPN2 Missense_Mutation p.E65Q 0.23 tolerated(0.11) possibly_damaging(0.769) TCGA-AN-A0XW-01 18 18963557 18963557 C T GREB1L Silent p.L26L 0.13 TCGA-AN-A0XW-01 18 21127971 21127971 C G NPC1 Missense_Mutation p.E586Q 0.30 tolerated(0.15) benign(0.103) TCGA-AN-A0XW-01 18 31314312 31314312 G A ASXL3 Missense_Mutation p.E339K 0.06 probably_damaging(0.999) TCGA-AN-A0XW-01 19 10260162 10260162 G A DNMT1 Silent p.I851I 0.14 TCGA-AN-A0XW-01 19 11457289 11457289 G C CCDC159 Missense_Mutation p.E3Q 0.18 deleterious_low_confidence(0.03) benign(0.003) TCGA-AN-A0XW-01 19 12059255 12059255 C G ZNF700 Nonsense_Mutation p.S139* 0.12 TCGA-AN-A0XW-01 19 12460322 12460322 G A ZNF442 3'UTR 0.17 TCGA-AN-A0XW-01 19 14910073 14910073 C G OR7C1 Silent p.L292L 0.15 TCGA-AN-A0XW-01 19 16060444 16060444 G A OR10H4 Silent p.L209L 0.18 TCGA-AN-A0XW-01 19 20229833 20229833 C G ZNF90 Missense_Mutation p.F490L 0.09 deleterious(0.02) possibly_damaging(0.899) TCGA-AN-A0XW-01 19 24309129 24309129 G A ZNF254 Silent p.L109L 0.16 TCGA-AN-A0XW-01 19 32902391 32902391 G C DPY19L3 Intron 0.13 TCGA-AN-A0XW-01 19 35175542 35175542 C G ZNF302 Missense_Mutation p.I200M 0.06 tolerated(0.09) possibly_damaging(0.642) TCGA-AN-A0XW-01 19 37310567 37310567 C A ZNF790 Nonsense_Mutation p.E227* 0.06 TCGA-AN-A0XW-01 19 37310661 37310661 C G ZNF790 Missense_Mutation p.E195D 0.06 deleterious(0.03) benign(0.008) TCGA-AN-A0XW-01 19 37310884 37310884 C T ZNF790 Nonsense_Mutation p.W121* 0.07 TCGA-AN-A0XW-01 19 40225039 40225039 C G CLC Missense_Mutation p.V63L 0.20 deleterious(0.01) possibly_damaging(0.744) TCGA-AN-A0XW-01 19 41223786 41223786 C G ITPKC Missense_Mutation p.S249C 0.24 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-AN-A0XW-01 19 41601698 41601698 G A CYP2A13 Missense_Mutation p.R446K 0.16 tolerated(0.05) benign(0.032) TCGA-AN-A0XW-01 19 42791541 42791541 C G CIC Silent p.L174L 0.16 TCGA-AN-A0XW-01 19 43099053 43099053 C G CEACAM8 5'UTR 0.23 TCGA-AN-A0XW-01 19 43268100 43268100 C G PSG8 Missense_Mutation p.G133A 0.06 tolerated(0.18) benign(0.217) TCGA-AN-A0XW-01 19 44117755 44117755 G C SRRM5 Missense_Mutation p.E494D 0.04 tolerated(0.25) possibly_damaging(0.801) TCGA-AN-A0XW-01 19 44611829 44611829 C G ZNF224 Missense_Mutation p.H506D 0.12 deleterious(0) probably_damaging(0.976) TCGA-AN-A0XW-01 19 46324658 46324658 C T SYMPK Missense_Mutation p.M959I 0.13 deleterious(0.02) benign(0.069) TCGA-AN-A0XW-01 19 48304998 48304998 C G TPRX1 3'UTR 0.17 TCGA-AN-A0XW-01 19 49348692 49348692 G A PLEKHA4 Missense_Mutation p.P560S 0.21 deleterious(0.01) possibly_damaging(0.804) TCGA-AN-A0XW-01 19 49384381 49384381 C G TULP2 Missense_Mutation p.E484Q 0.07 deleterious(0) possibly_damaging(0.58) TCGA-AN-A0XW-01 19 49867240 49867240 G A DKKL1 5'UTR 0.17 TCGA-AN-A0XW-01 19 50364584 50364584 G C PNKP Missense_Mutation p.S496C 0.11 deleterious(0) benign(0.443) TCGA-AN-A0XW-01 19 50463829 50463829 G A SIGLEC11 Missense_Mutation p.A147V 0.07 tolerated(0.3) benign(0.003) TCGA-AN-A0XW-01 19 52477751 52477751 C T ZNF350 5'UTR 0.12 TCGA-AN-A0XW-01 19 53740966 53740966 C G ZNF677 Missense_Mutation p.Q338H 0.17 tolerated(0.1) probably_damaging(0.992) TCGA-AN-A0XW-01 19 54238214 54238214 G A MIR518D RNA 0.06 TCGA-AN-A0XW-01 19 54254548 54254548 G C MIR522 RNA 0.15 TCGA-AN-A0XW-01 19 54610364 54610364 G C TFPT Missense_Mutation p.S252C 0.16 deleterious_low_confidence(0.03) benign(0.163) TCGA-AN-A0XW-01 19 54871673 54871673 G C LAIR1 Missense_Mutation p.S124C 0.14 deleterious(0.03) benign(0.157) TCGA-AN-A0XW-01 19 57868151 57868151 G C ZNF304 Missense_Mutation p.R305T 0.23 deleterious(0.01) possibly_damaging(0.521) TCGA-AN-A0XW-01 19 58059141 58059141 A G ZNF550 Silent p.L116L 0.05 TCGA-AN-A0XW-01 19 7163183 7163183 G A INSR Missense_Mutation p.S630L 0.22 deleterious(0.01) probably_damaging(1) TCGA-AN-A0XW-01 1 100620693 100620693 G A LRRC39 Silent p.S242S 0.03 TCGA-AN-A0XW-01 1 104076405 104076405 A T RNPC3 Missense_Mutation p.L95F 0.05 deleterious(0.04) probably_damaging(1) TCGA-AN-A0XW-01 1 107866939 107866939 G A NTNG1 Silent p.A94A 0.07 TCGA-AN-A0XW-01 1 112999921 112999921 C T CTTNBP2NL Missense_Mutation p.H603Y 0.33 tolerated(0.27) benign(0.211) TCGA-AN-A0XW-01 1 115420781 115420781 G C SYCP1 Missense_Mutation p.E290Q 0.35 tolerated(1) benign(0.097) TCGA-AN-A0XW-01 1 118485115 118485115 C G WDR3 Missense_Mutation p.L349V 0.38 deleterious(0.04) possibly_damaging(0.493) TCGA-AN-A0XW-01 1 145015865 145015865 C G RP11-326G21.1 5'Flank 0.08 TCGA-AN-A0XW-01 1 145580631 145580631 C G PIAS3 Intron 0.14 TCGA-AN-A0XW-01 1 150784586 150784586 C G ARNT Missense_Mutation p.E761Q 0.05 deleterious_low_confidence(0) benign(0.432) TCGA-AN-A0XW-01 1 150933151 150933151 G C SETDB1 Missense_Mutation p.E871D 0.10 deleterious(0) probably_damaging(0.997) TCGA-AN-A0XW-01 1 151820278 151820278 C G THEM5 Missense_Mutation p.Q212H 0.25 deleterious(0.02) benign(0.119) TCGA-AN-A0XW-01 1 153598799 153598799 G C S100A13 Silent p.L50L 0.21 TCGA-AN-A0XW-01 1 154072563 154072563 G C NUP210L Missense_Mutation p.L626V 0.21 tolerated(0.28) benign(0.019) TCGA-AN-A0XW-01 1 154941864 154941864 G C SHC1 Missense_Mutation p.Q186E 0.10 deleterious(0) benign(0.376) TCGA-AN-A0XW-01 1 156262865 156262865 C A C1orf85 Missense_Mutation p.K397N 0.13 deleterious(0.04) possibly_damaging(0.501) TCGA-AN-A0XW-01 1 15654624 15654624 C T FHAD1 Intron 0.29 TCGA-AN-A0XW-01 1 157106111 157106111 C T ETV3 Missense_Mutation p.E12K 0.15 tolerated_low_confidence(0.16) benign(0.053) TCGA-AN-A0XW-01 1 158654937 158654937 G A SPTA1 Silent p.I75I 0.21 TCGA-AN-A0XW-01 1 173157704 173157704 G C TNFSF4 Nonsense_Mutation p.S53* 0.13 TCGA-AN-A0XW-01 1 179312005 179312005 C G SOAT1 Missense_Mutation p.P290A 0.04 tolerated(0.43) benign(0.344) TCGA-AN-A0XW-01 1 182869343 182869343 C T SHCBP1L Missense_Mutation p.M579I 0.10 deleterious(0) probably_damaging(0.96) TCGA-AN-A0XW-01 1 183094653 183094653 C G LAMC1 Missense_Mutation p.F923L 0.17 deleterious(0.01) benign(0.202) TCGA-AN-A0XW-01 1 186113455 186113455 G A HMCN1 Missense_Mutation p.C4692Y 0.40 probably_damaging(0.945) TCGA-AN-A0XW-01 1 196963292 196963292 G A CFHR5 Silent p.L171L 0.15 TCGA-AN-A0XW-01 1 200571145 200571145 C G KIF14 Silent p.T677T 0.03 TCGA-AN-A0XW-01 1 201759887 201759887 C G NAV1 Missense_Mutation p.S1105C 0.44 deleterious(0) probably_damaging(0.987) TCGA-AN-A0XW-01 1 201868371 201868371 G C LMOD1 Silent p.L590L 0.09 TCGA-AN-A0XW-01 1 204590511 204590511 C G LRRN2 5'UTR 0.40 TCGA-AN-A0XW-01 1 205031020 205031020 C G CNTN2 Missense_Mutation p.S334W 0.23 deleterious(0) probably_damaging(0.967) TCGA-AN-A0XW-01 1 206231046 206231046 C T AVPR1B Silent p.L393L 0.20 TCGA-AN-A0XW-01 1 206239319 206239319 C G C1orf186 3'UTR 0.08 TCGA-AN-A0XW-01 1 206765042 206765042 C T EIF2D 3'UTR 0.04 TCGA-AN-A0XW-01 1 207317225 207317225 G C C4BPA Missense_Mutation p.E503Q 0.07 tolerated(0.1) probably_damaging(0.998) TCGA-AN-A0XW-01 1 208207881 208207881 G A PLXNA2 Silent p.I1607I 0.06 TCGA-AN-A0XW-01 1 215798948 215798948 C G USH2A 3'UTR 0.11 TCGA-AN-A0XW-01 1 221054582 221054582 C G HLX Silent p.L213L 0.16 TCGA-AN-A0XW-01 1 225334811 225334811 G T DNAH14 Silent p.V678V 0.13 TCGA-AN-A0XW-01 1 226019512 226019512 C T EPHX1 Silent p.F72F 0.11 TCGA-AN-A0XW-01 1 230991649 230991649 C G C1orf198 Intron 0.18 TCGA-AN-A0XW-01 1 232649933 232649933 C T SIPA1L2 Missense_Mutation p.E385K 0.12 deleterious(0) probably_damaging(0.995) TCGA-AN-A0XW-01 1 237713931 237713931 G A RYR2 Missense_Mutation p.E1052K 0.11 possibly_damaging(0.64) TCGA-AN-A0XW-01 1 245006509 245006509 G A COX20 3'UTR 0.21 TCGA-AN-A0XW-01 1 249151646 249151646 G A ZNF692 Missense_Mutation p.H93Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 1 26510895 26510895 C T CNKSR1 Missense_Mutation p.S335F 0.19 deleterious(0.01) benign(0.299) TCGA-AN-A0XW-01 1 26513679 26513679 C T CNKSR1 Silent p.L443L 0.16 TCGA-AN-A0XW-01 1 26514740 26514740 C G CNKSR1 Silent p.L490L 0.20 TCGA-AN-A0XW-01 1 26517876 26517876 C T CATSPER4 Silent p.I104I 0.39 TCGA-AN-A0XW-01 1 67666482 67666482 C G IL23R Nonsense_Mutation p.S185* 0.14 TCGA-AN-A0XW-01 1 78269023 78269023 C G FAM73A Missense_Mutation p.Q148E 0.04 tolerated(0.26) possibly_damaging(0.497) TCGA-AN-A0XW-01 20 3210899 3210899 C G SLC4A11 Missense_Mutation p.E518Q 0.19 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 20 34082384 34082384 G A CEP250 Missense_Mutation p.D1023N 0.11 benign(0.041) TCGA-AN-A0XW-01 21 30699465 30699465 C T BACH1 Silent p.I440I 0.07 TCGA-AN-A0XW-01 21 34717589 34717589 C T IFNAR1 Silent p.V237V 0.26 TCGA-AN-A0XW-01 21 38516840 38516840 C T TTC3 Silent p.L596L 0.25 TCGA-AN-A0XW-01 21 40720242 40720242 C G HMGN1 Silent p.A34A 0.15 TCGA-AN-A0XW-01 21 46697010 46697010 G A POFUT2 Silent p.D251D 0.13 TCGA-AN-A0XW-01 21 48080771 48080771 C G PRMT2 Nonsense_Mutation p.S286* 0.23 TCGA-AN-A0XW-01 22 30077506 30077506 G C NF2 Silent p.L551L 0.14 TCGA-AN-A0XW-01 22 30077516 30077516 G A NF2 Missense_Mutation p.E555K 0.14 tolerated(0.1) possibly_damaging(0.803) TCGA-AN-A0XW-01 22 30077543 30077543 G C NF2 Missense_Mutation p.E564Q 0.12 tolerated(0.09) benign(0.021) TCGA-AN-A0XW-01 22 30975192 30975192 C T PES1 Missense_Mutation p.E485K 0.15 tolerated(0.48) benign(0.002) TCGA-AN-A0XW-01 22 31822619 31822619 C G DRG1 Missense_Mutation p.I244M 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-AN-A0XW-01 22 36624084 36624084 G C APOL2 Missense_Mutation p.S127C 0.27 deleterious(0) probably_damaging(0.947) TCGA-AN-A0XW-01 22 37628023 37628023 G A RAC2 Silent p.L79L 0.21 TCGA-AN-A0XW-01 22 42610881 42610881 G C TCF20 Missense_Mutation p.S144C 0.12 possibly_damaging(0.823) TCGA-AN-A0XW-01 22 46652385 46652385 C A PKDREJ 3'UTR 0.20 TCGA-AN-A0XW-01 2 100209770 100209770 C G AFF3 Missense_Mutation p.E810Q 0.31 tolerated(0.06) benign(0.048) TCGA-AN-A0XW-01 2 109088057 109088057 C A GCC2 Missense_Mutation p.Q758K 0.23 tolerated(0.05) benign(0.188) TCGA-AN-A0XW-01 2 111398734 111398734 C T BUB1 Silent p.L944L 0.07 TCGA-AN-A0XW-01 2 11720882 11720882 C T GREB1 Silent p.F275F 0.13 TCGA-AN-A0XW-01 2 120718518 120718518 G C PTPN4 Missense_Mutation p.E757Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 2 162087878 162087878 C G TANK Missense_Mutation p.T306S 0.04 tolerated(0.37) benign(0.081) TCGA-AN-A0XW-01 2 162087994 162087994 C G TANK Missense_Mutation p.L345V 0.11 deleterious(0.03) benign(0.053) TCGA-AN-A0XW-01 2 166210849 166210849 G A SCN2A Missense_Mutation p.E1023K 0.07 tolerated(0.17) benign(0.025) TCGA-AN-A0XW-01 2 168104667 168104667 G A XIRP2 Missense_Mutation p.M2255I 0.06 possibly_damaging(0.487) TCGA-AN-A0XW-01 2 179416517 179416517 G A TTN Silent p.L30370L 0.08 TCGA-AN-A0XW-01 2 179584439 179584439 C T TTN Missense_Mutation p.R7927K 0.18 TCGA-AN-A0XW-01 2 197002326 197002326 C T STK17B Missense_Mutation p.E322K 0.27 tolerated(0.08) probably_damaging(0.985) TCGA-AN-A0XW-01 2 200797832 200797832 G C TYW5 Silent p.V302V 0.28 TCGA-AN-A0XW-01 2 201437093 201437093 G C SGOL2 Missense_Mutation p.R675T 0.23 tolerated(0.6) benign(0.006) TCGA-AN-A0XW-01 2 201683492 201683492 C G BZW1 Silent p.V310V 0.04 TCGA-AN-A0XW-01 2 203990152 203990152 G C NBEAL1 Missense_Mutation p.Q891H 0.27 deleterious(0.02) benign(0.289) TCGA-AN-A0XW-01 2 21231741 21231741 C G APOB Missense_Mutation p.E2667Q 0.22 possibly_damaging(0.782) TCGA-AN-A0XW-01 2 216197123 216197124 - A ATIC Frame_Shift_Ins p.F237Ifs*45 0.12 TCGA-AN-A0XW-01 2 237489685 237489685 G A ACKR3 Missense_Mutation p.E193K 0.24 tolerated(0.39) possibly_damaging(0.719) TCGA-AN-A0XW-01 2 238664814 238664814 G C LRRFIP1 Missense_Mutation p.R244T 0.12 deleterious(0.03) possibly_damaging(0.673) TCGA-AN-A0XW-01 2 242186244 242186244 C G HDLBP Missense_Mutation p.E625Q 0.26 deleterious(0.01) possibly_damaging(0.493) TCGA-AN-A0XW-01 2 25039532 25039532 C A CENPO Silent p.L204L 0.18 TCGA-AN-A0XW-01 2 27803414 27803414 G C C2orf16 Missense_Mutation p.K1325N 0.26 tolerated(0.06) benign(0.01) TCGA-AN-A0XW-01 2 28626999 28626999 C T FOSL2 Missense_Mutation p.S43L 0.14 deleterious(0) probably_damaging(0.991) TCGA-AN-A0XW-01 2 32836564 32836564 G A BIRC6 Missense_Mutation p.C4770Y 0.28 probably_damaging(0.99) TCGA-AN-A0XW-01 2 33500876 33500876 G C LTBP1 Missense_Mutation p.E960Q 0.07 deleterious(0.02) possibly_damaging(0.662) TCGA-AN-A0XW-01 2 38298053 38298053 G C CYP1B1 Missense_Mutation p.L482V 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-AN-A0XW-01 2 54014442 54014442 G A ERLEC1 Missense_Mutation p.R32Q 0.21 tolerated(0.15) benign(0.189) TCGA-AN-A0XW-01 2 56103863 56103863 C T EFEMP1 Missense_Mutation p.D259N 0.06 tolerated(0.13) possibly_damaging(0.859) TCGA-AN-A0XW-01 2 84880876 84880876 G A DNAH6 Missense_Mutation p.D1838N 0.27 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 2 99811355 99811355 G C MRPL30 Missense_Mutation p.E92Q 0.25 tolerated(0.41) benign(0.023) TCGA-AN-A0XW-01 3 108112937 108112937 C T MYH15 Missense_Mutation p.E1754K 0.33 deleterious(0.02) benign(0.088) TCGA-AN-A0XW-01 3 133476751 133476751 G C TF Missense_Mutation p.E337Q 0.29 tolerated(0.24) benign(0.189) TCGA-AN-A0XW-01 3 142537266 142537266 G A PCOLCE2 Nonsense_Mutation p.R387* 0.24 TCGA-AN-A0XW-01 3 148768137 148768137 G C HLTF Nonsense_Mutation p.S500* 0.04 TCGA-AN-A0XW-01 3 14974750 14974750 C G FGD5 3'UTR 0.08 TCGA-AN-A0XW-01 3 179597907 179597907 C A PEX5L Missense_Mutation p.L105F 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AN-A0XW-01 3 197790652 197790652 G A ANKRD18DP RNA 0.05 TCGA-AN-A0XW-01 3 33175749 33175749 G A CRTAP Missense_Mutation p.D382N 0.20 tolerated(0.05) unknown(0) TCGA-AN-A0XW-01 3 33194715 33194715 G A SUSD5 Missense_Mutation p.S470L 0.06 tolerated(0.07) possibly_damaging(0.642) TCGA-AN-A0XW-01 3 40291811 40291811 G T MYRIP Missense_Mutation p.R787S 0.26 tolerated(0.36) benign(0.345) TCGA-AN-A0XW-01 3 44685697 44685697 G C ZNF197 Missense_Mutation p.E1025D 0.25 tolerated_low_confidence(0.45) benign(0) TCGA-AN-A0XW-01 3 46399964 46399964 C T CCR2 Intron 0.19 TCGA-AN-A0XW-01 3 48224485 48224485 C G CDC25A Missense_Mutation p.R121S 0.21 tolerated(0.07) probably_damaging(0.974) TCGA-AN-A0XW-01 3 48719900 48719900 C T NCKIPSD Missense_Mutation p.D123N 0.15 tolerated(0.14) probably_damaging(0.992) TCGA-AN-A0XW-01 3 50415439 50415439 C G CACNA2D2 Silent p.L493L 0.33 TCGA-AN-A0XW-01 3 52327124 52327124 G C GLYCTK Missense_Mutation p.L518F 0.16 deleterious(0.01) benign(0.21) TCGA-AN-A0XW-01 3 56173584 56173584 C G ERC2 Missense_Mutation p.E476Q 0.12 deleterious(0) probably_damaging(0.989) TCGA-AN-A0XW-01 3 57632137 57632137 G A DENND6A Nonsense_Mutation p.Q283* 0.15 TCGA-AN-A0XW-01 3 62257185 62257185 C T PTPRG Missense_Mutation p.S1046L 0.10 deleterious(0) probably_damaging(0.994) TCGA-AN-A0XW-01 3 62423808 62423808 C T CADPS Missense_Mutation p.E1250K 0.23 deleterious(0) benign(0.077) TCGA-AN-A0XW-01 3 78710205 78710205 G C ROBO1 Missense_Mutation p.I765M 0.20 tolerated(0.13) benign(0.109) TCGA-AN-A0XW-01 3 81692075 81692075 G A GBE1 Silent p.V283V 0.24 TCGA-AN-A0XW-01 4 120221638 120221638 C G C4orf3 Missense_Mutation p.R151P 0.28 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-AN-A0XW-01 4 13601173 13601173 C T BOD1L1 Missense_Mutation p.E2451K 0.24 benign(0.005) TCGA-AN-A0XW-01 4 15054051 15054051 C G CPEB2 Silent p.L738L 0.16 TCGA-AN-A0XW-01 4 2242269 2242269 C T HAUS3 Silent p.L135L 0.08 TCGA-AN-A0XW-01 4 54011671 54011671 C A SCFD2 Nonsense_Mutation p.E464* 0.07 TCGA-AN-A0XW-01 4 54324906 54324906 G C FIP1L1 Missense_Mutation p.R529T 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-AN-A0XW-01 4 55589766 55589766 G A KIT Silent p.L416L 0.06 TCGA-AN-A0XW-01 4 6303223 6303223 C G WFS1 Silent p.L567L 0.21 TCGA-AN-A0XW-01 4 71024408 71024408 G C C4orf40 Missense_Mutation p.E147Q 0.34 tolerated(0.33) unknown(0) TCGA-AN-A0XW-01 4 71201591 71201591 G A CABS1 Missense_Mutation p.D279N 0.10 deleterious(0.04) probably_damaging(0.95) TCGA-AN-A0XW-01 4 85758097 85758097 C T WDFY3 Silent p.Q187Q 0.24 TCGA-AN-A0XW-01 5 112406916 112406916 G T MCC Silent p.L600L 0.24 TCGA-AN-A0XW-01 5 118482538 118482538 C G DMXL1 Nonsense_Mutation p.S859* 0.32 TCGA-AN-A0XW-01 5 118569138 118569138 G C DMXL1 Missense_Mutation p.M2793I 0.24 tolerated(0.87) benign(0.001) TCGA-AN-A0XW-01 5 122154620 122154620 G C SNX2 Missense_Mutation p.E372Q 0.19 deleterious(0) possibly_damaging(0.787) TCGA-AN-A0XW-01 5 124080411 124080411 G A ZNF608 Missense_Mutation p.S91F 0.19 deleterious(0) possibly_damaging(0.549) TCGA-AN-A0XW-01 5 131925407 131925407 G A RAD50 Missense_Mutation p.E444K 0.19 tolerated(0.51) benign(0.034) TCGA-AN-A0XW-01 5 132403197 132403197 C G HSPA4 Missense_Mutation p.S85C 0.24 deleterious(0.04) possibly_damaging(0.684) TCGA-AN-A0XW-01 5 133496765 133496765 C G SKP1 Missense_Mutation p.E76D 0.03 tolerated(0.54) benign(0.123) TCGA-AN-A0XW-01 5 137846256 137846256 C G ETF1 Missense_Mutation p.E361Q 0.16 tolerated(0.1) benign(0.305) TCGA-AN-A0XW-01 5 138223329 138223329 G C CTNNA1 Missense_Mutation p.E432Q 0.19 tolerated(0.07) benign(0.301) TCGA-AN-A0XW-01 5 140358575 140358575 G C PCDHAC1 Silent p.L825L 0.22 TCGA-AN-A0XW-01 5 140390817 140390817 C T PCDHAC1 3'UTR 0.19 TCGA-AN-A0XW-01 5 140560003 140560003 C T PCDHB8 Silent p.F796F 0.16 TCGA-AN-A0XW-01 5 140801497 140801497 G C PCDHGA11 Missense_Mutation p.D235H 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-AN-A0XW-01 5 142283177 142283177 G C ARHGAP26 Missense_Mutation p.E259Q 0.10 tolerated(0.05) benign(0.006) TCGA-AN-A0XW-01 5 148743738 148743738 G T PCYOX1L Missense_Mutation p.Q145H 0.23 tolerated(0.65) probably_damaging(0.999) TCGA-AN-A0XW-01 5 176778543 176778543 G C LMAN2 Missense_Mutation p.L36V 0.17 tolerated(0.15) unknown(0) TCGA-AN-A0XW-01 5 40936479 40936479 C T C7 Missense_Mutation p.S107F 0.14 tolerated(0.21) benign(0.125) TCGA-AN-A0XW-01 5 43161888 43161888 G C ZNF131 Missense_Mutation p.W269C 0.19 deleterious(0.04) probably_damaging(0.919) TCGA-AN-A0XW-01 5 55250653 55250653 G A IL6ST Missense_Mutation p.R479C 0.08 deleterious(0.02) benign(0.33) TCGA-AN-A0XW-01 5 60982860 60982860 C T C5orf64 Missense_Mutation p.S63L 0.06 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-AN-A0XW-01 5 79032398 79032398 G A CMYA5 Missense_Mutation p.E2604K 0.16 possibly_damaging(0.551) TCGA-AN-A0XW-01 5 80600664 80600664 G C ZCCHC9 Missense_Mutation p.E30Q 0.18 tolerated(0.36) benign(0.005) TCGA-AN-A0XW-01 6 101054655 101054655 C G ASCC3 Missense_Mutation p.D1669H 0.14 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 6 105845790 105845790 G A PREP Missense_Mutation p.H20Y 0.02 deleterious(0.02) benign(0.284) TCGA-AN-A0XW-01 6 109906366 109906366 C G AK9 Missense_Mutation p.E692Q 0.06 tolerated(0.1) benign(0.051) TCGA-AN-A0XW-01 6 152671773 152671773 C T SYNE1 Missense_Mutation p.D3905N 0.39 benign(0.024) TCGA-AN-A0XW-01 6 161128786 161128786 G A PLG Silent p.R80R 0.19 TCGA-AN-A0XW-01 6 161160215 161160215 G C PLG Missense_Mutation p.D665H 0.10 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 6 17855684 17855684 G C KIF13A Missense_Mutation p.L160V 0.24 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 6 26033520 26033520 C T HIST1H2AB Missense_Mutation p.E93K 0.18 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-AN-A0XW-01 6 28472203 28472203 C T GPX6 Missense_Mutation p.D178N 0.07 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 6 29571032 29571032 G A GABBR1 3'UTR 0.09 TCGA-AN-A0XW-01 6 29797308 29797308 G A HLA-G Missense_Mutation p.G245R 0.12 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-AN-A0XW-01 6 37447030 37447030 C T CMTR1 Missense_Mutation p.H792Y 0.25 tolerated(0.72) benign(0.002) TCGA-AN-A0XW-01 6 46658583 46658583 C A TDRD6 Missense_Mutation p.F906L 0.06 deleterious(0) probably_damaging(0.999) TCGA-AN-A0XW-01 6 74104715 74104715 G T DDX43 Missense_Mutation p.R29S 0.31 deleterious_low_confidence(0.03) benign(0.084) TCGA-AN-A0XW-01 6 90440499 90440499 C T MDN1 Missense_Mutation p.E1696K 0.09 benign(0.065) TCGA-AN-A0XW-01 6 90577750 90577750 G C CASP8AP2 RNA 0.06 TCGA-AN-A0XW-01 7 100678770 100678770 C G MUC17 Nonsense_Mutation p.S1358* 0.16 TCGA-AN-A0XW-01 7 128491678 128491678 C G FLNC Missense_Mutation p.I1946M 0.29 deleterious(0) possibly_damaging(0.873) TCGA-AN-A0XW-01 7 130140330 130140330 C G MEST Missense_Mutation p.P202A 0.18 tolerated(0.06) benign(0.14) TCGA-AN-A0XW-01 7 148508733 148508733 G C EZH2 Nonsense_Mutation p.S644* 0.23 TCGA-AN-A0XW-01 7 151856085 151856085 C G KMT2C Missense_Mutation p.E3845Q 0.07 possibly_damaging(0.871) TCGA-AN-A0XW-01 7 154754071 154754071 G A PAXIP1 Missense_Mutation p.P696L 0.07 deleterious(0) unknown(0) TCGA-AN-A0XW-01 7 19761719 19761719 C G TMEM196 Silent p.L166L 0.21 TCGA-AN-A0XW-01 7 27140466 27140466 G A HOXA2 Missense_Mutation p.S337L 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-AN-A0XW-01 7 43663366 43663366 G C STK17A Missense_Mutation p.D267H 0.21 deleterious(0.01) possibly_damaging(0.886) TCGA-AN-A0XW-01 7 44080613 44080613 C T DBNL 5'Flank 0.15 TCGA-AN-A0XW-01 7 64388187 64388187 A T ZNF273 Nonsense_Mutation p.R161* 0.04 TCGA-AN-A0XW-01 7 87042989 87042989 C T ABCB4 Silent p.L909L 0.14 TCGA-AN-A0XW-01 7 88423641 88423641 C G C7orf62 Missense_Mutation p.D206H 0.19 deleterious(0.03) possibly_damaging(0.907) TCGA-AN-A0XW-01 7 92083885 92083885 C G GATAD1 Missense_Mutation p.Q169E 0.06 deleterious(0) benign(0.388) TCGA-AN-A0XW-01 7 97933661 97933661 G A BAIAP2L1 Silent p.T423T 0.13 TCGA-AN-A0XW-01 8 100836113 100836113 G C VPS13B Missense_Mutation p.Q3104H 0.03 deleterious(0.01) benign(0.216) TCGA-AN-A0XW-01 8 109215698 109215698 C T EIF3E Missense_Mutation p.E366K 0.17 deleterious(0.02) benign(0.414) TCGA-AN-A0XW-01 8 109455911 109455911 C T EMC2 Silent p.Y8Y 0.16 TCGA-AN-A0XW-01 8 121256230 121256230 C T COL14A1 Missense_Mutation p.S821F 0.22 deleterious(0) probably_damaging(0.998) TCGA-AN-A0XW-01 8 125035808 125035808 G A FER1L6 Missense_Mutation p.C753Y 0.16 deleterious(0) probably_damaging(1) TCGA-AN-A0XW-01 8 126073342 126073342 C T KIAA0196 Silent p.L501L 0.16 TCGA-AN-A0XW-01 8 12879434 12879434 C T KIAA1456 Nonsense_Mutation p.R416* 0.07 TCGA-AN-A0XW-01 8 17228607 17228607 G C MTMR7 Missense_Mutation p.I83M 0.06 deleterious(0) benign(0.152) TCGA-AN-A0XW-01 8 18257609 18257609 C G NAT2 Missense_Mutation p.I32M 0.05 deleterious(0.04) possibly_damaging(0.762) TCGA-AN-A0XW-01 8 2000284 2000284 C A MYOM2 Missense_Mutation p.S39Y 0.29 deleterious(0) possibly_damaging(0.534) TCGA-AN-A0XW-01 8 27964277 27964277 C T ELP3 Silent p.I102I 0.08 TCGA-AN-A0XW-01 8 42213048 42213048 G A POLB Missense_Mutation p.E129K 0.07 tolerated(0.62) benign(0.008) TCGA-AN-A0XW-01 8 95423541 95423541 G C RAD54B Missense_Mutation p.H103D 0.29 tolerated(0.26) benign(0.035) TCGA-AN-A0XW-01 9 100074413 100074413 G C CCDC180 Missense_Mutation p.K137N 0.10 tolerated(0.1) possibly_damaging(0.617) TCGA-AN-A0XW-01 9 104314451 104314451 C T RNF20 Silent p.L479L 0.08 TCGA-AN-A0XW-01 9 107550323 107550323 C A ABCA1 Missense_Mutation p.A2028S 0.08 tolerated(0.11) benign(0.222) TCGA-AN-A0XW-01 9 108270975 108270975 C G FSD1L Missense_Mutation p.P292A 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-AN-A0XW-01 9 108370197 108370197 G C FKTN Missense_Mutation p.E249Q 0.15 deleterious(0) probably_damaging(0.974) TCGA-AN-A0XW-01 9 109687510 109687510 C G ZNF462 Missense_Mutation p.F439L 0.17 benign(0.418) TCGA-AN-A0XW-01 9 113233667 113233667 G A SVEP1 Missense_Mutation p.S992L 0.23 probably_damaging(0.999) TCGA-AN-A0XW-01 9 115806218 115806218 C G ZFP37 Missense_Mutation p.G227A 0.06 tolerated(0.45) benign(0.08) TCGA-AN-A0XW-01 9 123779994 123779994 C T C5 Missense_Mutation p.G548E 0.12 deleterious(0) probably_damaging(0.992) TCGA-AN-A0XW-01 9 123880758 123880758 G A CNTRL Silent p.Q530Q 0.27 TCGA-AN-A0XW-01 9 125616341 125616341 G A RC3H2 Nonsense_Mutation p.Q1003* 0.33 TCGA-AN-A0XW-01 9 131476875 131476875 G T PKN3 Nonsense_Mutation p.E506* 0.17 TCGA-AN-A0XW-01 9 131477131 131477131 G A PKN3 Missense_Mutation p.A547T 0.11 tolerated(0.43) benign(0.001) TCGA-AN-A0XW-01 9 131479161 131479161 G A PKN3 Missense_Mutation p.M648I 0.26 deleterious(0) benign(0.101) TCGA-AN-A0XW-01 9 132854535 132854535 C T GPR107 Silent p.I246I 0.07 TCGA-AN-A0XW-01 9 132854600 132854600 C T GPR107 Missense_Mutation p.S268L 0.06 tolerated(0.55) benign(0.023) TCGA-AN-A0XW-01 9 132854616 132854616 C A GPR107 Missense_Mutation p.F273L 0.05 deleterious(0) possibly_damaging(0.9) TCGA-AN-A0XW-01 9 135778153 135778153 C G TSC1 Missense_Mutation p.E744Q 0.06 deleterious(0.01) probably_damaging(0.934) TCGA-AN-A0XW-01 9 136380724 136380724 C T TMEM8C Silent p.Q135Q 0.08 TCGA-AN-A0XW-01 9 6256323 6256323 C G IL33 3'UTR 0.27 TCGA-AN-A0XW-01 9 86616664 86616664 G A RMI1 Missense_Mutation p.D255N 0.09 tolerated(0.57) benign(0.01) TCGA-AN-A0XW-01 9 87342871 87342871 G A NTRK2 Missense_Mutation p.D386N 0.25 tolerated(0.75) benign(0.29) TCGA-AN-A0XW-01 9 95033329 95033329 C G IARS Missense_Mutation p.L381F 0.32 deleterious(0) probably_damaging(0.992) TCGA-AN-A0XW-01 X 12938975 12938975 G A TLR8 Missense_Mutation p.E606K 0.12 tolerated(0.76) benign(0.001) TCGA-AN-A0XW-01 X 147063138 147063138 C T FMR1NB Silent p.L72L 0.11 TCGA-AN-A0XW-01 X 151092820 151092820 G A MAGEA4 Silent p.V228V 0.22 TCGA-AN-A0XW-01 X 151092833 151092833 G A MAGEA4 Missense_Mutation p.D233N 0.24 tolerated(0.09) possibly_damaging(0.593) TCGA-AN-A0XW-01 X 151821498 151821498 G A GABRQ Silent p.K551K 0.15 TCGA-AN-A0XW-01 X 152937598 152937598 G A PNCK Silent p.L169L 0.27 TCGA-AN-A0XW-01 X 152958473 152958473 C T SLC6A8 Intron 0.22 TCGA-AN-A0XW-01 X 19027881 19027881 C T GPR64 Missense_Mutation p.D429N 0.24 tolerated(0.39) benign(0.033) TCGA-AN-A0XW-01 X 3021958 3021958 C T ARSF Nonsense_Mutation p.Q420* 0.06 TCGA-AN-A0XW-01 X 37026598 37026598 A G FAM47C Missense_Mutation p.R39G 0.31 deleterious(0.01) possibly_damaging(0.798) TCGA-AN-A0XW-01 X 43818058 43818058 C T NDP 5'UTR 0.15 TCGA-AN-A0XW-01 X 51487692 51487692 G A GSPT2 Missense_Mutation p.E324K 0.03 deleterious(0) probably_damaging(0.994) TCGA-AN-A0XW-01 X 53588834 53588834 C T HUWE1 Missense_Mutation p.E2464K 0.09 benign(0.292) TCGA-AN-A0XW-01 X 53661226 53661226 A T HUWE1 Missense_Mutation p.F177I 0.30 probably_damaging(0.989) TCGA-AN-A0XW-01 X 69615617 69615617 G C KIF4A Missense_Mutation p.D777H 0.23 tolerated(0.07) possibly_damaging(0.548) TCGA-AN-A0XW-01 X 83127968 83127968 T G CYLC1 Missense_Mutation p.I84M 0.07 tolerated(0.22) probably_damaging(0.965) TCGA-AN-A0XW-01 X 8591691 8591691 T G KAL1 Missense_Mutation p.E92D 0.27 tolerated(0.17) benign(0) TCGA-AN-A0XW-01 X 99941834 99941834 C T SYTL4 Intron 0.20 TCGA-AO-A03M-01 10 100179913 100179913 G A HPS1 Silent p.V582V 0.11 TCGA-AO-A03M-01 10 102743096 102743096 C T SEMA4G Silent p.L580L 0.14 TCGA-AO-A03M-01 10 11207576 11207576 G C CELF2 Missense_Mutation p.E68Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 10 112340694 112340694 G C SMC3 Missense_Mutation p.Q154H 0.16 tolerated(0.91) benign(0.066) TCGA-AO-A03M-01 10 116205085 116205085 C G ABLIM1 Missense_Mutation p.E605Q 0.12 tolerated(0.14) benign(0.067) TCGA-AO-A03M-01 10 11908538 11908538 G A PROSER2 Silent p.E49E 0.14 TCGA-AO-A03M-01 10 12043791 12043791 G C UPF2 Nonsense_Mutation p.S513* 0.08 TCGA-AO-A03M-01 10 123241689 123241689 G T FGFR2 Intron 0.14 TCGA-AO-A03M-01 10 124175468 124175468 C G PLEKHA1 Missense_Mutation p.Q188E 0.09 tolerated(0.87) benign(0) TCGA-AO-A03M-01 10 13164482 13164482 G C OPTN Missense_Mutation p.E293Q 0.14 tolerated(0.08) possibly_damaging(0.721) TCGA-AO-A03M-01 10 135025317 135025317 C T KNDC1 Silent p.F1397F 0.14 TCGA-AO-A03M-01 10 135106140 135106140 G A TUBGCP2 Silent p.L387L 0.17 TCGA-AO-A03M-01 10 13699367 13699367 G C FRMD4A Nonsense_Mutation p.S741* 0.21 TCGA-AO-A03M-01 10 16957164 16957164 G C CUBN Missense_Mutation p.I2406M 0.11 deleterious(0.02) benign(0.009) TCGA-AO-A03M-01 10 26825036 26825036 G C APBB1IP Missense_Mutation p.E312Q 0.13 deleterious(0) probably_damaging(0.99) TCGA-AO-A03M-01 10 27408279 27408279 C G YME1L1 Missense_Mutation p.G561A 0.10 tolerated(0.05) possibly_damaging(0.507) TCGA-AO-A03M-01 10 28250537 28250537 G C ARMC4 Nonsense_Mutation p.S449* 0.10 TCGA-AO-A03M-01 10 32326280 32326280 G T KIF5B Missense_Mutation p.H205N 0.26 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 10 33199373 33199373 G A ITGB1 Nonsense_Mutation p.Q648* 0.12 TCGA-AO-A03M-01 10 37422881 37422881 G C ANKRD30A Missense_Mutation p.E163Q 0.10 tolerated(0.07) probably_damaging(0.913) TCGA-AO-A03M-01 10 50732269 50732269 C T ERCC6-PGBD3 Missense_Mutation p.E403K 0.11 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AO-A03M-01 10 63964638 63964638 G C RTKN2 Missense_Mutation p.F388L 0.19 tolerated(0.49) benign(0.162) TCGA-AO-A03M-01 10 70525810 70525810 G C CCAR1 Missense_Mutation p.E758Q 0.09 deleterious(0.01) probably_damaging(0.932) TCGA-AO-A03M-01 10 71164725 71164725 G A TACR2 Missense_Mutation p.H352Y 0.11 tolerated(0.49) benign(0.002) TCGA-AO-A03M-01 10 72503854 72503854 G A ADAMTS14 Missense_Mutation p.M700I 0.18 tolerated(0.39) benign(0.013) TCGA-AO-A03M-01 10 74831931 74831931 C G P4HA1 Missense_Mutation p.E61Q 0.18 tolerated(0.09) benign(0.064) TCGA-AO-A03M-01 10 74934488 74934488 G C FAM149B1 Missense_Mutation p.E31Q 0.18 deleterious(0) benign(0.287) TCGA-AO-A03M-01 10 76788633 76788633 G C KAT6B Missense_Mutation p.E1351Q 0.11 possibly_damaging(0.775) TCGA-AO-A03M-01 10 76924411 76924411 G C SAMD8 Missense_Mutation p.R196T 0.14 tolerated(0.37) benign(0.379) TCGA-AO-A03M-01 10 7768927 7768927 G A ITIH2 Missense_Mutation p.M333I 0.11 deleterious(0.01) possibly_damaging(0.734) TCGA-AO-A03M-01 10 7769060 7769060 G A ITIH2 Missense_Mutation p.E378K 0.10 tolerated(0.44) benign(0.057) TCGA-AO-A03M-01 10 7769779 7769779 G C ITIH2 Missense_Mutation p.D423H 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-AO-A03M-01 10 91066854 91066854 C A IFIT2 Missense_Mutation p.Q381K 0.11 deleterious(0.02) probably_damaging(0.965) TCGA-AO-A03M-01 10 94239162 94239162 C G IDE Missense_Mutation p.D586H 0.13 deleterious(0) probably_damaging(0.994) TCGA-AO-A03M-01 10 97775988 97775988 G A CC2D2B Missense_Mutation p.E147K 0.10 deleterious(0.01) possibly_damaging(0.775) TCGA-AO-A03M-01 10 97918542 97918542 G C ZNF518A RNA 0.12 TCGA-AO-A03M-01 10 97919631 97919631 G A ZNF518A RNA 0.15 TCGA-AO-A03M-01 10 99968876 99968876 G A R3HCC1L Silent p.K335K 0.12 TCGA-AO-A03M-01 11 103019265 103019265 C G DYNC2H1 Silent p.V955V 0.15 TCGA-AO-A03M-01 11 107403094 107403094 C T ALKBH8 Silent p.V270V 0.18 TCGA-AO-A03M-01 11 108384453 108384453 G C EXPH5 Missense_Mutation p.S594C 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-AO-A03M-01 11 113644308 113644308 C T ZW10 Silent p.L27L 0.12 TCGA-AO-A03M-01 11 113934539 113934539 G A ZBTB16 Missense_Mutation p.G173R 0.12 tolerated(0.53) benign(0) TCGA-AO-A03M-01 11 114569282 114569282 C T NXPE2 Silent p.F216F 0.14 TCGA-AO-A03M-01 11 118363787 118363787 G C KMT2A Missense_Mutation p.D1674H 0.14 probably_damaging(0.999) TCGA-AO-A03M-01 11 119029576 119029576 C G ABCG4 Silent p.L458L 0.11 TCGA-AO-A03M-01 11 122775987 122775987 C G C11orf63 Intron 0.26 TCGA-AO-A03M-01 11 125448876 125448876 G A EI24 Missense_Mutation p.G158E 0.14 tolerated(0.17) probably_damaging(0.991) TCGA-AO-A03M-01 11 125708267 125708267 G C PATE4 Missense_Mutation p.R81T 0.18 tolerated(0.58) benign(0.008) TCGA-AO-A03M-01 11 126110856 126110856 G A FAM118B Missense_Mutation p.E86K 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-AO-A03M-01 11 128708906 128708906 G C KCNJ1 3'UTR 0.25 TCGA-AO-A03M-01 11 128839196 128839196 G C ARHGAP32 Missense_Mutation p.S1957C 0.16 deleterious_low_confidence(0) benign(0.235) TCGA-AO-A03M-01 11 130778094 130778094 C T SNX19 Intron 0.23 TCGA-AO-A03M-01 11 134188522 134188522 C A GLB1L3 Intron 0.13 TCGA-AO-A03M-01 11 18467850 18467850 G C LDHC Missense_Mutation p.R268S 0.14 tolerated(0.25) benign(0.101) TCGA-AO-A03M-01 11 18723509 18723509 G A TMEM86A Missense_Mutation p.E226K 0.12 tolerated(0.15) benign(0.359) TCGA-AO-A03M-01 11 19173724 19173724 C G ZDHHC13 Missense_Mutation p.L202V 0.11 deleterious(0) probably_damaging(0.979) TCGA-AO-A03M-01 11 32990666 32990666 C A QSER1 Missense_Mutation p.L1599I 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-AO-A03M-01 11 33680366 33680366 G A KIAA1549L Missense_Mutation p.D1680N 0.12 tolerated(0.08) possibly_damaging(0.802) TCGA-AO-A03M-01 11 35454436 35454436 G C PAMR1 Missense_Mutation p.S561C 0.18 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 11 43876875 43876875 G C HSD17B12 3'UTR 0.17 TCGA-AO-A03M-01 11 4411255 4411255 C G TRIM21 Missense_Mutation p.E129Q 0.10 deleterious(0.01) probably_damaging(0.92) TCGA-AO-A03M-01 11 45928734 45928734 G A C11orf94 Silent p.L21L 0.15 TCGA-AO-A03M-01 11 4674549 4674549 C G OR51E1 Missense_Mutation p.R265G 0.14 deleterious(0) probably_damaging(0.995) TCGA-AO-A03M-01 11 55371784 55371784 C T OR4C11 Silent p.Q22Q 0.16 TCGA-AO-A03M-01 11 56114208 56114208 C T OR8K1 Missense_Mutation p.L232F 0.13 tolerated_low_confidence(0.21) possibly_damaging(0.471) TCGA-AO-A03M-01 11 57156626 57156626 C T PRG2 Missense_Mutation p.E75K 0.13 tolerated(0.1) benign(0.007) TCGA-AO-A03M-01 11 57379219 57379219 G C SERPING1 Silent p.L353L 0.09 TCGA-AO-A03M-01 11 57461342 57461342 G A ZDHHC5 Silent p.V280V 0.14 TCGA-AO-A03M-01 11 58125988 58125988 C T OR5B17 Silent p.L185L 0.24 TCGA-AO-A03M-01 11 58170385 58170385 G C OR5B3 Missense_Mutation p.F166L 0.09 deleterious_low_confidence(0.03) benign(0.248) TCGA-AO-A03M-01 11 59224695 59224695 G A OR4D6 Missense_Mutation p.D88N 0.15 deleterious(0.04) benign(0.001) TCGA-AO-A03M-01 11 59603335 59603335 C G GIF Missense_Mutation p.G340A 0.13 deleterious(0) possibly_damaging(0.631) TCGA-AO-A03M-01 11 62285902 62285902 G C AHNAK Silent p.L5329L 0.11 TCGA-AO-A03M-01 11 62365556 62365556 G A MTA2 Nonsense_Mutation p.Q144* 0.14 TCGA-AO-A03M-01 11 6244989 6244989 G C FAM160A2 Missense_Mutation p.L210V 0.13 deleterious(0.01) possibly_damaging(0.894) TCGA-AO-A03M-01 11 62482969 62482969 C T HNRNPUL2 Intron 0.10 TCGA-AO-A03M-01 11 63884789 63884789 C T FLRT1 Silent p.V350V 0.11 TCGA-AO-A03M-01 11 6578303 6578303 C G DNHD1 Missense_Mutation p.S2593C 0.06 probably_damaging(0.983) TCGA-AO-A03M-01 11 6807144 6807144 G C OR2AG1 Silent p.L292L 0.07 TCGA-AO-A03M-01 11 70267647 70267647 G C CTTN Intron 0.09 TCGA-AO-A03M-01 11 72712106 72712106 C G FCHSD2 Missense_Mutation p.E106Q 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-AO-A03M-01 11 75442295 75442295 C G MOGAT2 Missense_Mutation p.F323L 0.17 deleterious(0.01) benign(0.314) TCGA-AO-A03M-01 11 76371263 76371263 G C LRRC32 Silent p.L458L 0.20 TCGA-AO-A03M-01 11 7650743 7650743 G C PPFIBP2 Missense_Mutation p.K314N 0.14 tolerated(0.08) benign(0.003) TCGA-AO-A03M-01 11 774048 774048 G C PDDC1 Silent p.L69L 0.19 TCGA-AO-A03M-01 11 77632422 77632422 G A INTS4 Silent p.L576L 0.15 TCGA-AO-A03M-01 11 78383321 78383321 C T TENM4 Silent p.E1850E 0.17 TCGA-AO-A03M-01 11 8132155 8132155 G A RIC3 3'UTR 0.39 TCGA-AO-A03M-01 11 82991263 82991263 C A CCDC90B Silent p.R47R 0.08 TCGA-AO-A03M-01 11 838147 838147 C A CD151 Silent p.I239I 0.12 TCGA-AO-A03M-01 11 89531369 89531369 G T TRIM49 Missense_Mutation p.L430I 0.08 deleterious(0.02) possibly_damaging(0.861) TCGA-AO-A03M-01 11 9161334 9161334 C G DENND5A Missense_Mutation p.D1250H 0.11 deleterious(0) possibly_damaging(0.89) TCGA-AO-A03M-01 11 92086551 92086551 C T FAT3 Missense_Mutation p.R425W 0.16 benign(0.339) TCGA-AO-A03M-01 12 102071099 102071099 C G MYBPC1 Silent p.V1005V 0.10 TCGA-AO-A03M-01 12 109684081 109684081 G T ACACB Missense_Mutation p.G1800V 0.27 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 12 110581255 110581255 G C IFT81 Missense_Mutation p.E284Q 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-AO-A03M-01 12 110929762 110929762 C A VPS29 3'UTR 0.15 TCGA-AO-A03M-01 12 113382520 113382520 G A OAS3 Intron 0.27 TCGA-AO-A03M-01 12 113388618 113388618 G C OAS3 Missense_Mutation p.E499Q 0.09 deleterious(0.05) benign(0.045) TCGA-AO-A03M-01 12 113748067 113748067 G C SLC8B1 Missense_Mutation p.S410C 0.19 deleterious(0) possibly_damaging(0.832) TCGA-AO-A03M-01 12 116446775 116446775 C G MED13L Missense_Mutation p.K481N 0.11 deleterious(0.02) unknown(0) TCGA-AO-A03M-01 12 120142189 120142189 G C CIT Silent p.L1761L 0.05 TCGA-AO-A03M-01 12 121746349 121746349 C T ANAPC5 Silent p.A734A 0.26 TCGA-AO-A03M-01 12 122294313 122294313 C T HPD Splice_Site p.X81_splice 0.12 TCGA-AO-A03M-01 12 122441575 122441575 G A WDR66 Missense_Mutation p.E1119K 0.26 deleterious(0.03) benign(0.178) TCGA-AO-A03M-01 12 122817576 122817576 G A CLIP1 Missense_Mutation p.S942F 0.22 deleterious(0.01) benign(0.005) TCGA-AO-A03M-01 12 12288175 12288175 C T LRP6 Missense_Mutation p.D1223N 0.07 deleterious(0.03) possibly_damaging(0.775) TCGA-AO-A03M-01 12 125267281 125267281 G A SCARB1 Missense_Mutation p.S493F 0.09 deleterious_low_confidence(0.04) benign(0.015) TCGA-AO-A03M-01 12 126137037 126137037 C G TMEM132B Silent p.V650V 0.12 TCGA-AO-A03M-01 12 14610211 14610211 C T ATF7IP Nonsense_Mutation p.Q714* 0.21 TCGA-AO-A03M-01 12 14688648 14688648 G A PLBD1 Silent p.F263F 0.12 TCGA-AO-A03M-01 12 15087835 15087835 C T ERP27 Silent p.L96L 0.15 TCGA-AO-A03M-01 12 19422772 19422772 G T PLEKHA5 Missense_Mutation p.M260I 0.12 tolerated(0.51) probably_damaging(0.993) TCGA-AO-A03M-01 12 20766419 20766419 G A PDE3A Missense_Mutation p.E352K 0.18 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 12 22005123 22005123 C G ABCC9 Missense_Mutation p.E893Q 0.12 tolerated(0.51) benign(0.084) TCGA-AO-A03M-01 12 27809661 27809661 G C PPFIBP1 Missense_Mutation p.R301T 0.10 deleterious(0.02) benign(0.083) TCGA-AO-A03M-01 12 29628064 29628064 C T OVCH1 Silent p.V510V 0.25 TCGA-AO-A03M-01 12 3129916 3129916 G C TEAD4 Missense_Mutation p.E234Q 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-AO-A03M-01 12 40077240 40077240 G C C12orf40 Missense_Mutation p.E414Q 0.07 tolerated(0.11) possibly_damaging(0.756) TCGA-AO-A03M-01 12 40153856 40153856 G C SLC2A13 Missense_Mutation p.S640C 0.14 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-AO-A03M-01 12 41414189 41414189 G C CNTN1 Missense_Mutation p.E824Q 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-AO-A03M-01 12 41463966 41463966 C T CNTN1 3'UTR 0.24 TCGA-AO-A03M-01 12 43769235 43769235 C G ADAMTS20 Missense_Mutation p.G1798A 0.12 deleterious(0.01) probably_damaging(1) TCGA-AO-A03M-01 12 45568032 45568032 C A PLEKHA8P1 RNA 0.04 TCGA-AO-A03M-01 12 48737162 48737162 C G ZNF641 Missense_Mutation p.R304T 0.09 deleterious(0.02) probably_damaging(0.977) TCGA-AO-A03M-01 12 49447061 49447061 C T KMT2D Missense_Mutation p.D295N 0.09 unknown(0) TCGA-AO-A03M-01 12 50031250 50031250 C G PRPF40B Intron 0.09 TCGA-AO-A03M-01 12 52156292 52156292 C A SCN8A Missense_Mutation p.F792L 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-AO-A03M-01 12 52827903 52827903 G C KRT75 Silent p.L62L 0.08 TCGA-AO-A03M-01 12 52979803 52979803 G A KRT72 Missense_Mutation p.S500L 0.09 tolerated_low_confidence(0.12) benign(0.005) TCGA-AO-A03M-01 12 53565620 53565620 G A CSAD Intron 0.19 TCGA-AO-A03M-01 12 53895905 53895905 G T TARBP2 Nonsense_Mutation p.E54* 0.13 TCGA-AO-A03M-01 12 54757475 54757475 C G GPR84 Missense_Mutation p.R54P 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-AO-A03M-01 12 56075776 56075776 G A METTL7B Missense_Mutation p.G80R 0.17 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 12 57422945 57422945 C T MYO1A Silent p.Q992Q 0.09 TCGA-AO-A03M-01 12 57865236 57865236 C G GLI1 Missense_Mutation p.Q905E 0.16 deleterious(0) probably_damaging(0.974) TCGA-AO-A03M-01 12 6640219 6640219 C T NCAPD2 Missense_Mutation p.S1366L 0.13 deleterious(0.01) benign(0.03) TCGA-AO-A03M-01 12 66909438 66909438 C G GRIP1 Missense_Mutation p.E229Q 0.11 tolerated(0.11) benign(0.261) TCGA-AO-A03M-01 12 66932879 66932879 C T GRIP1 Missense_Mutation p.E133K 0.15 deleterious(0) probably_damaging(0.988) TCGA-AO-A03M-01 12 7069833 7069833 G C PTPN6 Missense_Mutation p.E561Q 0.14 tolerated(0.09) possibly_damaging(0.607) TCGA-AO-A03M-01 12 70964974 70964974 C T PTPRB Missense_Mutation p.E1068K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A03M-01 12 72030782 72030782 G C ZFC3H1 Missense_Mutation p.L595V 0.09 tolerated(0.55) benign(0.099) TCGA-AO-A03M-01 12 72274279 72274279 G T TBC1D15 Missense_Mutation p.A79S 0.23 tolerated(0.74) benign(0.013) TCGA-AO-A03M-01 12 7945754 7945754 C G NANOG Silent p.L120L 0.29 TCGA-AO-A03M-01 12 85439870 85439870 G A LRRIQ1 Missense_Mutation p.E137K 0.11 deleterious(0.01) benign(0.055) TCGA-AO-A03M-01 12 85441224 85441224 G A LRRIQ1 Silent p.K218K 0.09 TCGA-AO-A03M-01 12 88570062 88570062 G C TMTC3 Missense_Mutation p.L466F 0.15 tolerated(0.08) benign(0.115) TCGA-AO-A03M-01 12 90010690 90010690 G C ATP2B1 Missense_Mutation p.F652L 0.11 deleterious(0) benign(0.108) TCGA-AO-A03M-01 12 94697788 94697788 G C PLXNC1 Missense_Mutation p.L1521F 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 12 94727325 94727325 C G CCDC41 Missense_Mutation p.E504Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 12 95867985 95867985 C T METAP2 Silent p.S10S 0.08 TCGA-AO-A03M-01 12 97339470 97339470 G C NEDD1 Splice_Site p.X559_splice 0.12 TCGA-AO-A03M-01 12 99043418 99043418 C G APAF1 Missense_Mutation p.S161C 0.10 deleterious(0) probably_damaging(0.916) TCGA-AO-A03M-01 13 101020767 101020767 C G PCCA Nonsense_Mutation p.S562* 0.12 TCGA-AO-A03M-01 13 101733934 101733934 C G NALCN Missense_Mutation p.D1277H 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 13 113803435 113803435 G A F10 Silent p.K357K 0.26 TCGA-AO-A03M-01 13 114766363 114766363 C T RASA3 Silent p.K596K 0.14 TCGA-AO-A03M-01 13 26971287 26971287 C T CDK8 Intron 0.17 TCGA-AO-A03M-01 13 31722132 31722132 C T HSPH1 Missense_Mutation p.D448N 0.09 tolerated(0.9) possibly_damaging(0.513) TCGA-AO-A03M-01 13 32786467 32786467 G A FRY Missense_Mutation p.E1544K 0.34 tolerated(0.46) benign(0.201) TCGA-AO-A03M-01 13 36167335 36167335 G A NBEA Intron 0.18 TCGA-AO-A03M-01 13 42871200 42871200 C G AKAP11 Missense_Mutation p.S78C 0.16 deleterious(0) probably_damaging(0.996) TCGA-AO-A03M-01 13 42874661 42874661 G C AKAP11 Missense_Mutation p.Q593H 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-AO-A03M-01 13 42875998 42875998 C T AKAP11 Missense_Mutation p.S1039F 0.13 tolerated(0.54) benign(0) TCGA-AO-A03M-01 13 46055380 46055380 C G COG3 Missense_Mutation p.L189V 0.10 tolerated(0.38) benign(0.194) TCGA-AO-A03M-01 13 46154110 46154110 C G FAM194B Splice_Site p.X307_splice 0.14 TCGA-AO-A03M-01 13 52348157 52348157 G A DHRS12 Missense_Mutation p.S175L 0.12 deleterious(0) possibly_damaging(0.76) TCGA-AO-A03M-01 13 52548838 52548838 C G ATP7B Missense_Mutation p.R173T 0.07 tolerated(0.14) possibly_damaging(0.665) TCGA-AO-A03M-01 13 52646146 52646146 C T NEK5 Missense_Mutation p.E620K 0.08 tolerated(1) benign(0) TCGA-AO-A03M-01 13 77672548 77672548 G A MYCBP2 Missense_Mutation p.S2876F 0.11 benign(0.079) TCGA-AO-A03M-01 13 77673130 77673130 G C MYCBP2 Nonsense_Mutation p.S2682* 0.17 TCGA-AO-A03M-01 13 77847643 77847643 G A MYCBP2 Silent p.L265L 0.10 TCGA-AO-A03M-01 13 79979880 79979880 G C RBM26 Missense_Mutation p.F10L 0.15 tolerated(0.99) unknown(0) TCGA-AO-A03M-01 13 80055606 80055606 C A NDFIP2 Missense_Mutation p.P90T 0.29 deleterious_low_confidence(0.01) benign(0.118) TCGA-AO-A03M-01 14 102549238 102549238 G T HSP90AA1 Intron 0.14 TCGA-AO-A03M-01 14 102689251 102689251 G C WDR20 3'UTR 0.20 TCGA-AO-A03M-01 14 103852287 103852287 G C MARK3 5'UTR 0.26 TCGA-AO-A03M-01 14 104575607 104575607 C A ASPG Missense_Mutation p.S492Y 0.13 tolerated(1) benign(0.178) TCGA-AO-A03M-01 14 105416670 105416670 G A AHNAK2 Silent p.L1706L 0.14 TCGA-AO-A03M-01 14 106321092 106321092 C T IGHM Silent p.E299E 0.11 TCGA-AO-A03M-01 14 20848488 20848488 G C TEP1 Missense_Mutation p.L1637V 0.11 tolerated(0.66) benign(0.009) TCGA-AO-A03M-01 14 21250297 21250297 G C RNASE6 Missense_Mutation p.D147H 0.11 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 14 21490827 21490827 G C NDRG2 Intron 0.26 TCGA-AO-A03M-01 14 21702335 21702335 G A HNRNPC Silent p.T6T 0.13 TCGA-AO-A03M-01 14 21831012 21831012 C T SUPT16H Missense_Mutation p.E536K 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-AO-A03M-01 14 21833277 21833277 C T SUPT16H Missense_Mutation p.E358K 0.23 deleterious(0) probably_damaging(0.997) TCGA-AO-A03M-01 14 21876692 21876692 C T CHD8 Missense_Mutation p.E837K 0.13 deleterious(0) probably_damaging(0.995) TCGA-AO-A03M-01 14 22671189 22671189 G A TRAV26-2 Missense_Mutation p.R85K 0.16 tolerated(0.06) probably_damaging(0.949) TCGA-AO-A03M-01 14 23847569 23847569 C T CMTM5 Silent p.L46L 0.11 TCGA-AO-A03M-01 14 23847601 23847601 C T CMTM5 Missense_Mutation p.S57F 0.10 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 14 23883308 23883308 C T MYH7 Missense_Mutation p.E1855K 0.16 deleterious(0) benign(0.26) TCGA-AO-A03M-01 14 24035526 24035526 C G AP1G2 Missense_Mutation p.E144D 0.11 deleterious(0.04) benign(0.082) TCGA-AO-A03M-01 14 24680890 24680890 C G CHMP4A Missense_Mutation p.K102N 0.11 deleterious(0) probably_damaging(0.991) TCGA-AO-A03M-01 14 31542162 31542162 G T AP4S1 Nonsense_Mutation p.E93* 0.12 TCGA-AO-A03M-01 14 31778176 31778176 C G AL136418.1 5'Flank 0.10 TCGA-AO-A03M-01 14 33290616 33290616 G A AKAP6 Silent p.L1199L 0.12 TCGA-AO-A03M-01 14 33293737 33293737 G C AKAP6 Missense_Mutation p.E2240Q 0.09 deleterious_low_confidence(0.03) benign(0.147) TCGA-AO-A03M-01 14 35249434 35249434 C T BAZ1A Missense_Mutation p.E732K 0.12 tolerated(0.11) possibly_damaging(0.899) TCGA-AO-A03M-01 14 35343775 35343775 C T BAZ1A Silent p.Q12Q 0.24 TCGA-AO-A03M-01 14 35871602 35871602 C A NFKBIA Nonsense_Mutation p.E302* 0.13 TCGA-AO-A03M-01 14 35872475 35872475 C T NFKBIA Missense_Mutation p.R143Q 0.21 tolerated(0.28) benign(0.084) TCGA-AO-A03M-01 14 39583603 39583603 G C GEMIN2 Missense_Mutation p.E32Q 0.11 deleterious(0.05) possibly_damaging(0.832) TCGA-AO-A03M-01 14 45693461 45693461 C T MIS18BP1 Missense_Mutation p.E777K 0.12 tolerated(0.17) benign(0.004) TCGA-AO-A03M-01 14 50218350 50218350 C T KLHDC1 Nonsense_Mutation p.Q361* 0.07 TCGA-AO-A03M-01 14 50249116 50249116 G T KLHDC2 Nonsense_Mutation p.E329* 0.11 TCGA-AO-A03M-01 14 52192580 52192580 C G FRMD6 Missense_Mutation p.L526V 0.11 tolerated(0.1) benign(0.327) TCGA-AO-A03M-01 14 53010301 53010301 G C TXNDC16 5'UTR 0.13 TCGA-AO-A03M-01 14 55818482 55818482 C T FBXO34 Silent p.I458I 0.11 TCGA-AO-A03M-01 14 64599109 64599109 G C SYNE2 Missense_Mutation p.E4823Q 0.13 benign(0.297) TCGA-AO-A03M-01 14 64608185 64608185 C G SYNE2 Missense_Mutation p.Q5035E 0.07 probably_damaging(0.938) TCGA-AO-A03M-01 14 64749709 64749709 G C ESR2 5'UTR 0.11 TCGA-AO-A03M-01 14 69818921 69818921 G A GALNT16 Intron 0.25 TCGA-AO-A03M-01 14 70634612 70634612 G A SLC8A3 Silent p.F176F 0.15 TCGA-AO-A03M-01 14 71209209 71209209 C T MAP3K9 Missense_Mutation p.E476K 0.08 deleterious(0) benign(0.329) TCGA-AO-A03M-01 14 72976919 72976919 G C RGS6 Missense_Mutation p.L341F 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-AO-A03M-01 14 75576448 75576448 G A NEK9 Silent p.V374V 0.11 TCGA-AO-A03M-01 14 76045470 76045470 C G FLVCR2 Missense_Mutation p.S52W 0.10 deleterious(0) probably_damaging(0.925) TCGA-AO-A03M-01 14 77492921 77492921 G A IRF2BPL Silent p.F405F 0.26 TCGA-AO-A03M-01 14 77719719 77719719 C T TMEM63C Silent p.L740L 0.14 TCGA-AO-A03M-01 14 89210436 89210436 C T EML5 Splice_Site p.X153_splice 0.15 TCGA-AO-A03M-01 14 90745473 90745473 G C NRDE2 Missense_Mutation p.S1101C 0.12 deleterious(0.04) benign(0.214) TCGA-AO-A03M-01 14 90755444 90755444 G C NRDE2 Missense_Mutation p.Q759E 0.10 tolerated(0.07) benign(0.13) TCGA-AO-A03M-01 14 90764656 90764656 C T NRDE2 Nonsense_Mutation p.W538* 0.12 TCGA-AO-A03M-01 14 93709172 93709172 G C BTBD7 Nonsense_Mutation p.S949* 0.11 TCGA-AO-A03M-01 14 93730319 93730319 C T BTBD7 Missense_Mutation p.E395K 0.10 tolerated(0.09) possibly_damaging(0.575) TCGA-AO-A03M-01 14 94505335 94505335 C T OTUB2 Silent p.I42I 0.12 TCGA-AO-A03M-01 14 94847287 94847287 C T SERPINA1 Missense_Mutation p.D280N 0.05 tolerated(0.06) benign(0.294) TCGA-AO-A03M-01 14 95090162 95090162 C G SERPINA3 3'UTR 0.22 TCGA-AO-A03M-01 15 100250838 100250838 G C MEF2A Splice_Site p.X331_splice 0.15 TCGA-AO-A03M-01 15 33945019 33945019 G C RYR3 Missense_Mutation p.V1415L 0.15 benign(0.014) TCGA-AO-A03M-01 15 38614607 38614607 C G SPRED1 Missense_Mutation p.Q125E 0.15 tolerated(1) benign(0.003) TCGA-AO-A03M-01 15 40544625 40544625 G C C15orf56 Missense_Mutation p.S116C 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-AO-A03M-01 15 42646581 42646581 C T GANC 3'Flank 0.14 TCGA-AO-A03M-01 15 42651922 42651922 C T CAPN3 5'UTR 0.19 TCGA-AO-A03M-01 15 42982015 42982015 C G STARD9 Missense_Mutation p.Q2747E 0.24 benign(0.102) TCGA-AO-A03M-01 15 43748887 43748887 G A TP53BP1 Missense_Mutation p.S640F 0.12 tolerated(0.06) benign(0.029) TCGA-AO-A03M-01 15 44053674 44053674 C G PDIA3 Silent p.L139L 0.24 TCGA-AO-A03M-01 15 45460052 45460052 G C SHF 3'UTR 0.16 TCGA-AO-A03M-01 15 55643018 55643018 G C PIGB Missense_Mutation p.M415I 0.19 deleterious(0) possibly_damaging(0.795) TCGA-AO-A03M-01 15 59752138 59752138 G C FAM81A Silent p.V9V 0.14 TCGA-AO-A03M-01 15 64221776 64221776 C G DAPK2 Missense_Mutation p.W211C 0.07 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 15 72492051 72492051 C G PKM Silent p.L512L 0.07 TCGA-AO-A03M-01 15 73541930 73541930 G C NEO1 Missense_Mutation p.D588H 0.05 deleterious(0) probably_damaging(0.985) TCGA-AO-A03M-01 15 75133824 75133824 G C ULK3 Missense_Mutation p.R131G 0.15 tolerated(0.08) benign(0.007) TCGA-AO-A03M-01 15 78401629 78401629 G A CIB2 Silent p.L98L 0.16 TCGA-AO-A03M-01 15 79339279 79339279 G T RASGRF1 Nonsense_Mutation p.Y229* 0.33 TCGA-AO-A03M-01 15 80467429 80467429 G A FAH Silent p.L303L 0.22 TCGA-AO-A03M-01 15 81572015 81572015 C T IL16 Silent p.I327I 0.21 TCGA-AO-A03M-01 15 90610660 90610660 G A ZNF710 Silent p.R97R 0.16 TCGA-AO-A03M-01 15 91542265 91542265 C G VPS33B Silent p.L598L 0.16 TCGA-AO-A03M-01 16 11000484 11000484 G A CIITA Missense_Mutation p.E379K 0.16 deleterious(0) possibly_damaging(0.896) TCGA-AO-A03M-01 16 1144797 1144797 C G C1QTNF8 Silent p.V42V 0.14 TCGA-AO-A03M-01 16 15817991 15817991 G C NDE1 Intron 0.12 TCGA-AO-A03M-01 16 1724028 1724028 C T CRAMP1L Silent p.V1264V 0.10 TCGA-AO-A03M-01 16 19528440 19528440 C A GDE1 Missense_Mutation p.M111I 0.11 tolerated(0.17) possibly_damaging(0.449) TCGA-AO-A03M-01 16 20575996 20575996 C G ACSM2B Missense_Mutation p.E58Q 0.14 deleterious(0.01) probably_damaging(0.909) TCGA-AO-A03M-01 16 2096298 2096298 C G NTHL1 Missense_Mutation p.G70A 0.11 tolerated(1) benign(0.001) TCGA-AO-A03M-01 16 2106207 2106207 C G TSC2 Missense_Mutation p.L204V 0.14 tolerated(0.23) benign(0.213) TCGA-AO-A03M-01 16 23614972 23614972 C T PALB2 Silent p.V1123V 0.16 TCGA-AO-A03M-01 16 23649225 23649225 C T PALB2 Missense_Mutation p.E53K 0.19 tolerated(0.08) benign(0.187) TCGA-AO-A03M-01 16 24820700 24820700 G A TNRC6A Missense_Mutation p.D1524N 0.12 deleterious(0) possibly_damaging(0.735) TCGA-AO-A03M-01 16 2512165 2512165 C G C16orf59 Silent p.L225L 0.15 TCGA-AO-A03M-01 16 25176024 25176024 C G LCMT1 Missense_Mutation p.F225L 0.11 tolerated(0.08) benign(0.035) TCGA-AO-A03M-01 16 27480781 27480781 C T GTF3C1 Silent p.V1635V 0.22 TCGA-AO-A03M-01 16 30485581 30485581 G A ITGAL Silent p.G42G 0.15 TCGA-AO-A03M-01 16 30536321 30536321 C G ZNF768 Missense_Mutation p.K380N 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AO-A03M-01 16 31091915 31091915 G A ZNF646 Missense_Mutation p.E1424K 0.11 deleterious(0.01) benign(0.345) TCGA-AO-A03M-01 16 313755 313755 G A ITFG3 Missense_Mutation p.G390E 0.29 tolerated(0.74) probably_damaging(0.996) TCGA-AO-A03M-01 16 31487500 31487500 C T TGFB1I1 Silent p.I294I 0.15 TCGA-AO-A03M-01 16 33020705 33020705 G T IGHV3OR16-8 Missense_Mutation p.R38I 0.16 deleterious_low_confidence(0) benign(0.336) TCGA-AO-A03M-01 16 3639441 3639441 C T SLX4 Missense_Mutation p.D1400N 0.20 deleterious(0.01) probably_damaging(0.913) TCGA-AO-A03M-01 16 4438633 4438633 C T CORO7 Splice_Site p.X206_splice 0.07 TCGA-AO-A03M-01 16 4625175 4625175 G C C16orf96 Missense_Mutation p.E232Q 0.13 tolerated(0.39) possibly_damaging(0.903) TCGA-AO-A03M-01 16 4882058 4882058 C G GLYR1 Missense_Mutation p.E153D 0.16 tolerated(0.25) benign(0.071) TCGA-AO-A03M-01 16 50102697 50102697 C T HEATR3 Silent p.L106L 0.11 TCGA-AO-A03M-01 16 50120139 50120139 C T HEATR3 Nonsense_Mutation p.Q463* 0.10 TCGA-AO-A03M-01 16 53348816 53348816 G C CHD9 Missense_Mutation p.D2466H 0.16 unknown(0) TCGA-AO-A03M-01 16 56510098 56510098 C T OGFOD1 Missense_Mutation p.S537L 0.12 deleterious(0.01) possibly_damaging(0.493) TCGA-AO-A03M-01 16 57758646 57758646 C G CCDC135 Missense_Mutation p.Q553E 0.19 tolerated(1) benign(0.005) TCGA-AO-A03M-01 16 57794284 57794284 G C KIFC3 Silent p.L759L 0.10 TCGA-AO-A03M-01 16 58537743 58537743 G A NDRG4 Silent p.V73V 0.15 TCGA-AO-A03M-01 16 58555118 58555118 C G CNOT1 Missense_Mutation p.E2341Q 0.11 deleterious(0.04) benign(0.061) TCGA-AO-A03M-01 16 67228757 67228757 C G E2F4 Missense_Mutation p.L228V 0.12 tolerated(0.43) benign(0.04) TCGA-AO-A03M-01 16 67261116 67261116 C T TMEM208 5'UTR 0.13 TCGA-AO-A03M-01 16 67854843 67854843 G A TSNAXIP1 Silent p.R29R 0.15 TCGA-AO-A03M-01 16 67969495 67969495 G A PSMB10 Silent p.F163F 0.18 TCGA-AO-A03M-01 16 68225045 68225045 C G NFATC3 Missense_Mutation p.Q825E 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-AO-A03M-01 16 68260336 68260336 C G NFATC3 Missense_Mutation p.P1064A 0.24 deleterious_low_confidence(0.01) benign(0.338) TCGA-AO-A03M-01 16 69373609 69373609 G A NIP7 5'UTR 0.15 TCGA-AO-A03M-01 16 70732665 70732665 C G VAC14 Missense_Mutation p.D571H 0.11 deleterious(0.05) probably_damaging(0.973) TCGA-AO-A03M-01 16 75646670 75646670 C G ADAT1 Missense_Mutation p.E172Q 0.14 tolerated(0.07) benign(0.212) TCGA-AO-A03M-01 16 77775548 77775548 G A NUDT7 Missense_Mutation p.E140K 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 16 85768834 85768834 C G C16orf74 5'UTR 0.07 TCGA-AO-A03M-01 16 88798808 88798808 C G PIEZO1 Missense_Mutation p.D976H 0.53 deleterious(0.02) benign(0.085) TCGA-AO-A03M-01 16 9009153 9009153 C G USP7 Missense_Mutation p.D346H 0.11 deleterious(0.02) possibly_damaging(0.891) TCGA-AO-A03M-01 16 90097842 90097842 G C GAS8 Missense_Mutation p.E76Q 0.09 deleterious(0.04) benign(0.094) TCGA-AO-A03M-01 16 90124581 90124581 C G PRDM7 3'UTR 0.14 TCGA-AO-A03M-01 17 11514971 11514971 G A DNAH9 Missense_Mutation p.E260K 0.12 benign(0.009) TCGA-AO-A03M-01 17 11520928 11520928 C G DNAH9 Missense_Mutation p.L369V 0.17 possibly_damaging(0.483) TCGA-AO-A03M-01 17 15909837 15909837 G C TTC19 Missense_Mutation p.E211Q 0.19 tolerated(0.07) possibly_damaging(0.754) TCGA-AO-A03M-01 17 16612420 16612420 C G CCDC144A Missense_Mutation p.S350C 0.26 tolerated(0.2) possibly_damaging(0.869) TCGA-AO-A03M-01 17 26821435 26821435 C T SLC13A2 Missense_Mutation p.L454F 0.17 tolerated(0.58) benign(0.393) TCGA-AO-A03M-01 17 28537644 28537644 C T SLC6A4 Silent p.V446V 0.10 TCGA-AO-A03M-01 17 28961240 28961240 G C LRRC37BP1 RNA 0.21 TCGA-AO-A03M-01 17 30536363 30536363 C G RHOT1 Intron 0.11 TCGA-AO-A03M-01 17 31091997 31091997 C T MYO1D Missense_Mutation p.E312K 0.14 tolerated(0.76) benign(0.098) TCGA-AO-A03M-01 17 35549229 35549229 G C ACACA Missense_Mutation p.I1406M 0.10 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 17 36881905 36881905 G C MLLT6 3'UTR 0.12 TCGA-AO-A03M-01 17 37357542 37357542 G A RPL19 Missense_Mutation p.E28K 0.12 deleterious(0.01) possibly_damaging(0.799) TCGA-AO-A03M-01 17 38324472 38324472 G C CASC3 Missense_Mutation p.Q589H 0.10 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-AO-A03M-01 17 38457243 38457243 G A CDC6 Silent p.L471L 0.18 TCGA-AO-A03M-01 17 38907262 38907262 C T KRT25 Missense_Mutation p.E301K 0.31 deleterious(0) probably_damaging(0.947) TCGA-AO-A03M-01 17 39681449 39681449 C T KRT19 Missense_Mutation p.R166Q 0.12 deleterious(0.01) benign(0.328) TCGA-AO-A03M-01 17 39724859 39724859 G A KRT9 Silent p.S357S 0.21 TCGA-AO-A03M-01 17 40117254 40117254 C G CNP 5'Flank 0.18 TCGA-AO-A03M-01 17 40725068 40725068 G C MLX 3'UTR 0.16 TCGA-AO-A03M-01 17 43555347 43555347 C G PLEKHM1 Missense_Mutation p.G72A 0.25 tolerated(0.06) probably_damaging(1) TCGA-AO-A03M-01 17 45820054 45820054 C T TBX21 Silent p.V190V 0.10 TCGA-AO-A03M-01 17 46655607 46655607 C A HOXB4 Missense_Mutation p.Q25H 0.19 tolerated(0.05) benign(0.142) TCGA-AO-A03M-01 17 46655621 46655621 C G HOXB4 Missense_Mutation p.E21Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 17 46926688 46926688 C G CALCOCO2 Missense_Mutation p.I188M 0.17 deleterious(0.02) benign(0.126) TCGA-AO-A03M-01 17 46928495 46928495 G A CALCOCO2 Silent p.L220L 0.08 TCGA-AO-A03M-01 17 47219488 47219488 G A B4GALNT2 Missense_Mutation p.A163T 0.13 tolerated(0.06) benign(0.202) TCGA-AO-A03M-01 17 4800501 4800501 G A MINK1 Silent p.V1306V 0.10 TCGA-AO-A03M-01 17 48213557 48213557 C G PPP1R9B Missense_Mutation p.Q691H 0.12 tolerated(0.2) benign(0.005) TCGA-AO-A03M-01 17 4849196 4849196 C T PFN1 Silent p.%3D 0.15 TCGA-AO-A03M-01 17 48917652 48917652 G A WFIKKN2 Missense_Mutation p.E335K 0.11 tolerated(0.44) benign(0.43) TCGA-AO-A03M-01 17 48917949 48917949 G T WFIKKN2 Nonsense_Mutation p.E434* 0.12 TCGA-AO-A03M-01 17 5331402 5331402 G C RPAIN Missense_Mutation p.L167F 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-AO-A03M-01 17 5463125 5463125 C A NLRP1 Missense_Mutation p.K297N 0.05 deleterious(0.03) benign(0.322) TCGA-AO-A03M-01 17 56355507 56355507 C T MPO Splice_Site p.X296_splice 0.12 TCGA-AO-A03M-01 17 56358002 56358002 G C MPO Missense_Mutation p.L40V 0.12 deleterious(0.03) benign(0.013) TCGA-AO-A03M-01 17 56606549 56606549 G C SEPT4 Intron 0.24 TCGA-AO-A03M-01 17 57322856 57322856 G C GDPD1 Missense_Mutation p.E89D 0.10 tolerated(0.46) benign(0.001) TCGA-AO-A03M-01 17 58256577 58256577 C A USP32 3'UTR 0.18 TCGA-AO-A03M-01 17 58256660 58256660 C T USP32 Missense_Mutation p.E1591K 0.13 deleterious(0.01) probably_damaging(0.931) TCGA-AO-A03M-01 17 59152303 59152303 G T BCAS3 Silent p.G699G 0.08 TCGA-AO-A03M-01 17 59996839 59996839 C T INTS2 Missense_Mutation p.E199K 0.06 deleterious(0.01) possibly_damaging(0.478) TCGA-AO-A03M-01 17 61466822 61466822 G A TANC2 Missense_Mutation p.E916K 0.10 tolerated(0.05) possibly_damaging(0.826) TCGA-AO-A03M-01 17 61473154 61473154 C G TANC2 Silent p.L960L 0.12 TCGA-AO-A03M-01 17 62499941 62499941 C G DDX5 Missense_Mutation p.E163Q 0.06 tolerated(0.5) benign(0.033) TCGA-AO-A03M-01 17 62594603 62594603 G A SMURF2 Missense_Mutation p.P33S 0.07 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 17 63204106 63204106 C T RGS9 Nonsense_Mutation p.Q424* 0.11 TCGA-AO-A03M-01 17 64731637 64731637 G A PRKCA Missense_Mutation p.E363K 0.20 deleterious(0.03) benign(0.402) TCGA-AO-A03M-01 17 64783247 64783247 G A PRKCA Intron 0.13 TCGA-AO-A03M-01 17 65739989 65739989 C G NOL11 3'UTR 0.10 TCGA-AO-A03M-01 17 65871671 65871671 G C BPTF Intron 0.08 TCGA-AO-A03M-01 17 65908868 65908868 C G BPTF Missense_Mutation p.S1623C 0.10 probably_damaging(0.999) TCGA-AO-A03M-01 17 72477880 72477880 G A CD300A Missense_Mutation p.E228K 0.11 deleterious(0) probably_damaging(0.995) TCGA-AO-A03M-01 17 7320450 7320450 G A NLGN2 Missense_Mutation p.E614K 0.24 tolerated(0.2) benign(0.003) TCGA-AO-A03M-01 17 73625785 73625785 C T RECQL5 Intron 0.10 TCGA-AO-A03M-01 17 73658703 73658703 C T RECQL5 Silent p.L209L 0.06 TCGA-AO-A03M-01 17 73934254 73934254 C G FBF1 5'UTR 0.07 TCGA-AO-A03M-01 17 7611466 7611466 G A EFNB3 Missense_Mutation p.D105N 0.25 tolerated(0.82) probably_damaging(0.984) TCGA-AO-A03M-01 17 76430206 76430206 G A DNAH17 Silent p.F4037F 0.10 TCGA-AO-A03M-01 17 76456012 76456012 C T DNAH17 Missense_Mutation p.M3155I 0.07 benign(0.046) TCGA-AO-A03M-01 17 76498929 76498929 C G DNAH17-AS1 3'UTR 0.17 TCGA-AO-A03M-01 17 78059891 78059891 G A CCDC40 Silent p.V775V 0.12 TCGA-AO-A03M-01 17 7851863 7851863 C G CNTROB Silent p.L813L 0.10 TCGA-AO-A03M-01 17 79914566 79914566 C A NOTUM Missense_Mutation p.W316C 0.14 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 17 80141779 80141779 G T CCDC57 Missense_Mutation p.S361Y 0.07 deleterious(0) probably_damaging(0.926) TCGA-AO-A03M-01 18 20596816 20596816 C G RBBP8 Missense_Mutation p.H795D 0.14 deleterious(0) probably_damaging(0.977) TCGA-AO-A03M-01 18 21136398 21136398 C G NPC1 Missense_Mutation p.D379H 0.10 deleterious(0.01) benign(0.013) TCGA-AO-A03M-01 18 21494748 21494748 G C LAMA3 Missense_Mutation p.R2523T 0.12 benign(0.002) TCGA-AO-A03M-01 18 21663021 21663021 C G TTC39C Missense_Mutation p.F320L 0.12 deleterious(0.03) possibly_damaging(0.558) TCGA-AO-A03M-01 18 21750311 21750311 C G OSBPL1A Missense_Mutation p.E800Q 0.27 tolerated(0.33) benign(0.005) TCGA-AO-A03M-01 18 28669404 28669404 C T DSC2 Missense_Mutation p.E210K 0.13 tolerated(0.61) benign(0.011) TCGA-AO-A03M-01 18 28669422 28669422 C T DSC2 Missense_Mutation p.E204K 0.12 deleterious(0.01) possibly_damaging(0.792) TCGA-AO-A03M-01 18 29787254 29787254 C T MEP1B Missense_Mutation p.S196L 0.14 tolerated(0.6) benign(0.032) TCGA-AO-A03M-01 18 29797015 29797015 C T MEP1B Silent p.L607L 0.21 TCGA-AO-A03M-01 18 29867550 29867550 T C GAREM Missense_Mutation p.D337G 0.08 deleterious(0) probably_damaging(0.921) TCGA-AO-A03M-01 18 33691198 33691198 G A SLC39A6 Silent p.L647L 0.15 TCGA-AO-A03M-01 18 39607379 39607379 C T PIK3C3 Intron 0.13 TCGA-AO-A03M-01 18 43437926 43437926 C G EPG5 Missense_Mutation p.R2445P 0.29 deleterious(0.02) benign(0.212) TCGA-AO-A03M-01 18 43508950 43508950 C G EPG5 Missense_Mutation p.R813T 0.07 deleterious(0) probably_damaging(0.943) TCGA-AO-A03M-01 18 57570023 57570023 G C PMAIP1 3'UTR 0.24 TCGA-AO-A03M-01 18 61060743 61060743 C G VPS4B Missense_Mutation p.D378H 0.10 tolerated(0.11) benign(0.112) TCGA-AO-A03M-01 18 70205948 70205948 T G CBLN2 Missense_Mutation p.R139S 0.11 tolerated(0.1) possibly_damaging(0.756) TCGA-AO-A03M-01 18 9254693 9254693 G C ANKRD12 Missense_Mutation p.L476F 0.30 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-AO-A03M-01 18 9513245 9513245 C G RALBP1 Missense_Mutation p.H68D 0.17 deleterious(0.02) benign(0.349) TCGA-AO-A03M-01 19 10781688 10781688 G C ILF3 Silent p.V14V 0.12 TCGA-AO-A03M-01 19 11727820 11727820 G A ZNF627 Missense_Mutation p.D168N 0.06 deleterious(0.04) possibly_damaging(0.492) TCGA-AO-A03M-01 19 12256735 12256735 C T ZNF625 Missense_Mutation p.E166K 0.14 tolerated(1) benign(0.306) TCGA-AO-A03M-01 19 13928148 13928148 G C ZSWIM4 Missense_Mutation p.E433D 0.18 tolerated(0.54) unknown(0) TCGA-AO-A03M-01 19 16003212 16003212 C G CYP4F2 Missense_Mutation p.W144C 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 19 1615708 1615708 C G TCF3 Silent p.L521L 0.19 TCGA-AO-A03M-01 19 16918669 16918669 G A NWD1 Missense_Mutation p.D1337N 0.10 tolerated(0.16) benign(0.038) TCGA-AO-A03M-01 19 1790809 1790809 G T ATP8B3 Missense_Mutation p.F775L 0.20 deleterious(0.03) benign(0.077) TCGA-AO-A03M-01 19 17983261 17983261 G A SLC5A5 Missense_Mutation p.E45K 0.41 tolerated(0.81) benign(0.341) TCGA-AO-A03M-01 19 18273836 18273836 C T PIK3R2 Missense_Mutation p.S390L 0.18 deleterious(0) probably_damaging(0.946) TCGA-AO-A03M-01 19 21719431 21719431 G C ZNF429 Missense_Mutation p.K192N 0.13 deleterious(0) probably_damaging(0.964) TCGA-AO-A03M-01 19 21720033 21720033 G C ZNF429 Missense_Mutation p.G393A 0.13 deleterious(0.01) possibly_damaging(0.736) TCGA-AO-A03M-01 19 30311662 30311662 C G CCNE1 Missense_Mutation p.F172L 0.13 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 19 326542 326542 C T MIER2 Missense_Mutation p.E184K 0.21 deleterious(0.01) possibly_damaging(0.594) TCGA-AO-A03M-01 19 326574 326574 C A MIER2 Missense_Mutation p.R173I 0.20 deleterious(0) benign(0.104) TCGA-AO-A03M-01 19 36297360 36297360 G A PRODH2 Nonsense_Mutation p.Q401* 0.07 TCGA-AO-A03M-01 19 36348024 36348024 G A KIRREL2 Translation_Start_Site p.M1? 0.17 tolerated_low_confidence(1) benign(0) TCGA-AO-A03M-01 19 37642658 37642658 C G ZNF585A Missense_Mutation p.E660Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-AO-A03M-01 19 37880266 37880266 G C ZNF527 Missense_Mutation p.E439Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 19 37880322 37880322 G A ZNF527 Silent p.L457L 0.11 TCGA-AO-A03M-01 19 38103034 38103034 G T ZNF540 Nonsense_Mutation p.E285* 0.32 TCGA-AO-A03M-01 19 38126340 38126340 G A ZFP30 Missense_Mutation p.H368Y 0.26 tolerated(0.39) probably_damaging(0.995) TCGA-AO-A03M-01 19 38861474 38861474 C G CATSPERG 3'UTR 0.13 TCGA-AO-A03M-01 19 41798307 41798307 G A HNRNPUL1 Missense_Mutation p.R386K 0.16 tolerated(0.91) unknown(0) TCGA-AO-A03M-01 19 42083792 42083792 C G CEACAM21 Nonsense_Mutation p.S102* 0.10 TCGA-AO-A03M-01 19 42125696 42125696 G C CEACAM4 3'UTR 0.10 TCGA-AO-A03M-01 19 42737298 42737298 G C GSK3A Missense_Mutation p.F354L 0.08 deleterious(0.03) benign(0.197) TCGA-AO-A03M-01 19 4282968 4282968 G C SHD Missense_Mutation p.M133I 0.08 tolerated(1) benign(0) TCGA-AO-A03M-01 19 43433868 43433868 C G PSG7 Missense_Mutation p.E145D 0.12 deleterious(0.04) benign(0.002) TCGA-AO-A03M-01 19 43530511 43530511 G A PSG11 Missense_Mutation p.S5L 0.10 deleterious(0.01) possibly_damaging(0.881) TCGA-AO-A03M-01 19 43965792 43965792 G C LYPD3 Nonsense_Mutation p.S251* 0.10 TCGA-AO-A03M-01 19 44635904 44635904 G A ZNF225 Silent p.K379K 0.08 TCGA-AO-A03M-01 19 45375120 45375120 G A PVRL2 Silent p.K163K 0.11 TCGA-AO-A03M-01 19 47503613 47503613 C G ARHGAP35 Missense_Mutation p.L1390V 0.06 tolerated(0.44) probably_damaging(0.98) TCGA-AO-A03M-01 19 4772199 4772199 C T MIR7-3HG RNA 0.12 TCGA-AO-A03M-01 19 47940726 47940726 C T SLC8A2 Silent p.V701V 0.10 TCGA-AO-A03M-01 19 4817022 4817022 G A TICAM1 Silent p.L456L 0.10 TCGA-AO-A03M-01 19 49216976 49216976 C G MAMSTR Missense_Mutation p.D321H 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.861) TCGA-AO-A03M-01 19 49224039 49224039 C T RASIP1 3'UTR 0.27 TCGA-AO-A03M-01 19 49652005 49652005 C T PPFIA3 Nonsense_Mutation p.Q1032* 0.24 TCGA-AO-A03M-01 19 49965874 49965874 G A ALDH16A1 Missense_Mutation p.M320I 0.11 tolerated(0.61) benign(0.042) TCGA-AO-A03M-01 19 50209591 50209591 G A CPT1C Missense_Mutation p.A422T 0.12 tolerated(0.37) benign(0.125) TCGA-AO-A03M-01 19 50380949 50380949 G A AKT1S1 5'UTR 0.08 TCGA-AO-A03M-01 19 50548387 50548387 C T ZNF473 Silent p.I229I 0.25 TCGA-AO-A03M-01 19 51527553 51527553 G A KLK11 Missense_Mutation p.H103Y 0.13 tolerated(0.17) benign(0.015) TCGA-AO-A03M-01 19 52091164 52091164 G C ZNF175 Missense_Mutation p.G527A 0.12 deleterious(0) probably_damaging(0.993) TCGA-AO-A03M-01 19 52538393 52538393 G A ZNF432 Missense_Mutation p.S180F 0.11 tolerated(0.34) benign(0.365) TCGA-AO-A03M-01 19 52825764 52825764 C T ZNF480 Missense_Mutation p.H421Y 0.08 deleterious(0) benign(0.02) TCGA-AO-A03M-01 19 53013980 53013980 C G ZNF578 Missense_Mutation p.Q116E 0.10 deleterious(0.03) probably_damaging(0.968) TCGA-AO-A03M-01 19 53418490 53418490 C T ZNF888 RNA 0.10 TCGA-AO-A03M-01 19 54656363 54656363 G A CNOT3 Missense_Mutation p.R635Q 0.15 tolerated(0.05) possibly_damaging(0.553) TCGA-AO-A03M-01 19 54695751 54695751 G C TSEN34 Silent p.S141S 0.11 TCGA-AO-A03M-01 19 55481534 55481534 G T NLRP2 Missense_Mutation p.D51Y 0.10 deleterious(0) possibly_damaging(0.897) TCGA-AO-A03M-01 19 55751015 55751015 C A PPP6R1 Nonsense_Mutation p.E534* 0.27 TCGA-AO-A03M-01 19 55995407 55995407 C T ZNF628 Silent p.L949L 0.21 TCGA-AO-A03M-01 19 56274478 56274478 G A RFPL4A Silent p.L267L 0.08 TCGA-AO-A03M-01 19 56953572 56953572 C G ZNF667 Missense_Mutation p.Q264H 0.05 tolerated(0.2) benign(0) TCGA-AO-A03M-01 19 56953810 56953810 G A ZNF667 Missense_Mutation p.S185L 0.10 tolerated(0.16) benign(0.194) TCGA-AO-A03M-01 19 57066038 57066038 C T ZFP28 Silent p.I628I 0.04 TCGA-AO-A03M-01 19 57929295 57929295 G C AC003002.6 Missense_Mutation p.E23Q 0.05 deleterious(0) probably_damaging(0.988) TCGA-AO-A03M-01 19 57967296 57967296 G C VN1R1 Missense_Mutation p.L187V 0.11 tolerated(0.64) benign(0.066) TCGA-AO-A03M-01 19 57984839 57984839 G A ZNF772 Nonsense_Mutation p.Q425* 0.07 TCGA-AO-A03M-01 19 58102291 58102291 G A ZIK1 Missense_Mutation p.R371K 0.14 tolerated(0.08) probably_damaging(0.99) TCGA-AO-A03M-01 19 58152161 58152161 G C ZNF211 Missense_Mutation p.G168R 0.16 deleterious(0.05) possibly_damaging(0.59) TCGA-AO-A03M-01 19 58452716 58452716 C T ZNF256 Missense_Mutation p.G487E 0.20 deleterious(0.01) probably_damaging(1) TCGA-AO-A03M-01 19 58639365 58639365 C G ZNF329 Missense_Mutation p.Q502H 0.18 deleterious(0.02) possibly_damaging(0.713) TCGA-AO-A03M-01 19 58724139 58724139 G C ZNF274 Missense_Mutation p.G530A 0.09 deleterious(0) probably_damaging(0.941) TCGA-AO-A03M-01 19 58773307 58773307 C T ZNF544 Silent p.F445F 0.13 TCGA-AO-A03M-01 19 58946211 58946211 G A ZNF132 Silent p.V200V 0.09 TCGA-AO-A03M-01 19 58980584 58980584 C T ZNF324 Missense_Mutation p.S11F 0.09 deleterious(0) probably_damaging(0.965) TCGA-AO-A03M-01 19 6262248 6262248 G C MLLT1 Missense_Mutation p.F89L 0.11 deleterious(0.03) possibly_damaging(0.906) TCGA-AO-A03M-01 19 6732521 6732521 C T GPR108 Missense_Mutation p.E325K 0.18 deleterious(0) probably_damaging(0.987) TCGA-AO-A03M-01 19 891096 891096 C T MED16 Missense_Mutation p.M12I 0.26 tolerated_low_confidence(0.21) benign(0.019) TCGA-AO-A03M-01 1 100661894 100661894 C T DBT Missense_Mutation p.D456N 0.10 deleterious(0) probably_damaging(0.997) TCGA-AO-A03M-01 1 100928262 100928262 G A CDC14A Silent p.V221V 0.13 TCGA-AO-A03M-01 1 109336203 109336203 G C STXBP3 Splice_Site p.X322_splice 0.20 TCGA-AO-A03M-01 1 109896991 109896991 C T SORT1 Missense_Mutation p.E236K 0.11 tolerated(0.69) benign(0.001) TCGA-AO-A03M-01 1 110129418 110129418 C T GNAI3 Missense_Mutation p.S263L 0.06 deleterious(0) probably_damaging(0.994) TCGA-AO-A03M-01 1 110737302 110737302 C T SLC6A17 Silent p.I467I 0.11 TCGA-AO-A03M-01 1 111215712 111215712 C T KCNA3 Missense_Mutation p.D574N 0.18 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-AO-A03M-01 1 111957325 111957325 C T OVGP1 Missense_Mutation p.E600K 0.11 tolerated_low_confidence(0.13) benign(0.091) TCGA-AO-A03M-01 1 114401701 114401701 C G PTPN22 Splice_Site p.X66_splice 0.24 TCGA-AO-A03M-01 1 115593133 115593133 C T TSPAN2 Missense_Mutation p.R215Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-AO-A03M-01 1 117624493 117624493 C T TTF2 Silent p.L609L 0.16 TCGA-AO-A03M-01 1 11769376 11769376 G A DRAXIN Missense_Mutation p.E166K 0.11 tolerated(0.09) benign(0.184) TCGA-AO-A03M-01 1 119936427 119936427 G C HAO2 Missense_Mutation p.E340D 0.13 tolerated(0.72) benign(0.003) TCGA-AO-A03M-01 1 12049355 12049355 G C MFN2 Missense_Mutation p.E44Q 0.16 tolerated(0.49) benign(0.329) TCGA-AO-A03M-01 1 12322095 12322095 C T VPS13D Missense_Mutation p.P518S 0.15 benign(0.001) TCGA-AO-A03M-01 1 1234000 1234000 C T ACAP3 Silent p.V270V 0.16 TCGA-AO-A03M-01 1 12382770 12382770 G C VPS13D Missense_Mutation p.E2628Q 0.12 benign(0.043) TCGA-AO-A03M-01 1 13910268 13910268 G A PDPN 5'UTR 0.33 TCGA-AO-A03M-01 1 14107608 14107608 G C PRDM2 Missense_Mutation p.E1106D 0.09 unknown(0) TCGA-AO-A03M-01 1 145115740 145115740 G C SEC22B RNA 0.04 TCGA-AO-A03M-01 1 145539441 145539441 G C ITGA10 Missense_Mutation p.R1037T 0.04 tolerated(0.15) benign(0.016) TCGA-AO-A03M-01 1 151214635 151214635 C G PIP5K1A Nonsense_Mutation p.S467* 0.11 TCGA-AO-A03M-01 1 151641035 151641035 G A SNX27 Missense_Mutation p.R358Q 0.05 deleterious(0.02) possibly_damaging(0.591) TCGA-AO-A03M-01 1 153730149 153730149 C T INTS3 Silent p.I353I 0.25 TCGA-AO-A03M-01 1 154296361 154296361 C T AQP10 Intron 0.25 TCGA-AO-A03M-01 1 156307942 156307942 C T CCT3 Intron 0.08 TCGA-AO-A03M-01 1 157737322 157737322 C T FCRL2 Intron 0.15 TCGA-AO-A03M-01 1 160012223 160012223 C G KCNJ10 Missense_Mutation p.D34H 0.08 deleterious(0) probably_damaging(0.989) TCGA-AO-A03M-01 1 160188200 160188200 C T DCAF8 Missense_Mutation p.E685K 0.08 deleterious(0.03) benign(0.439) TCGA-AO-A03M-01 1 160604688 160604688 C T SLAMF1 Splice_Site p.X139_splice 0.12 TCGA-AO-A03M-01 1 160788033 160788033 G C LY9 Missense_Mutation p.W456C 0.10 tolerated(0.08) possibly_damaging(0.907) TCGA-AO-A03M-01 1 162335292 162335292 C T RP11-565P22.6 Silent p.L32L 0.25 TCGA-AO-A03M-01 1 16355791 16355791 G C CLCNKA Missense_Mutation p.M408I 0.28 deleterious(0.02) possibly_damaging(0.908) TCGA-AO-A03M-01 1 16356261 16356261 G C CLCNKA Missense_Mutation p.M421I 0.29 tolerated(1) benign(0.002) TCGA-AO-A03M-01 1 16534659 16534659 G A ARHGEF19 Silent p.V158V 0.10 TCGA-AO-A03M-01 1 169515740 169515740 C G F5 Missense_Mutation p.E568Q 0.06 tolerated(0.1) probably_damaging(0.955) TCGA-AO-A03M-01 1 170521388 170521388 G C GORAB Missense_Mutation p.E324Q 0.10 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-AO-A03M-01 1 170931075 170931075 G C MROH9 Silent p.T111T 0.11 TCGA-AO-A03M-01 1 171236744 171236744 G A FMO1 Silent p.E65E 0.19 TCGA-AO-A03M-01 1 173455532 173455532 G C PRDX6 Missense_Mutation p.D180H 0.09 deleterious(0) probably_damaging(0.993) TCGA-AO-A03M-01 1 173839766 173839766 G A ZBTB37 Missense_Mutation p.E135K 0.10 deleterious(0.05) benign(0.029) TCGA-AO-A03M-01 1 176740264 176740264 G A PAPPA2 Missense_Mutation p.E1555K 0.11 tolerated(1) benign(0.057) TCGA-AO-A03M-01 1 176863943 176863943 C T ASTN1 Missense_Mutation p.E899K 0.17 tolerated(0.14) benign(0.01) TCGA-AO-A03M-01 1 181018285 181018285 C G MR1 Missense_Mutation p.I55M 0.20 deleterious(0.01) probably_damaging(1) TCGA-AO-A03M-01 1 183854006 183854006 G A RGL1 Silent p.L330L 0.06 TCGA-AO-A03M-01 1 186286710 186286710 C G TPR Missense_Mutation p.E2282Q 0.12 possibly_damaging(0.775) TCGA-AO-A03M-01 1 186307222 186307222 C G TPR Missense_Mutation p.K1435N 0.12 benign(0.403) TCGA-AO-A03M-01 1 19421445 19421445 C T UBR4 Silent p.E4567E 0.08 TCGA-AO-A03M-01 1 196920050 196920050 G A CFHR2 Missense_Mutation p.D108N 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-AO-A03M-01 1 202127408 202127408 C G PTPN7 Silent p.L153L 0.12 TCGA-AO-A03M-01 1 203154338 203154338 G A CHI3L1 Silent p.Y77Y 0.19 TCGA-AO-A03M-01 1 203465124 203465124 C G OPTC 5'UTR 0.10 TCGA-AO-A03M-01 1 203652420 203652420 G A ATP2B4 Silent p.L29L 0.10 TCGA-AO-A03M-01 1 205779621 205779621 C T SLC41A1 5'UTR 0.17 TCGA-AO-A03M-01 1 206603567 206603567 G C SRGAP2 Missense_Mutation p.R431T 0.14 deleterious(0) benign(0.409) TCGA-AO-A03M-01 1 20662862 20662862 C G VWA5B1 Missense_Mutation p.Q609E 0.24 tolerated(0.06) benign(0.111) TCGA-AO-A03M-01 1 206822317 206822317 G C DYRK3 3'UTR 0.12 TCGA-AO-A03M-01 1 207074880 207074880 C G IL24 Missense_Mutation p.F116L 0.14 tolerated(0.25) possibly_damaging(0.885) TCGA-AO-A03M-01 1 207200944 207200944 C T C1orf116 5'UTR 0.13 TCGA-AO-A03M-01 1 208213056 208213056 C T PLXNA2 Silent p.E1470E 0.10 TCGA-AO-A03M-01 1 209773405 209773405 C T CAMK1G Missense_Mutation p.S57L 0.12 tolerated(0.14) possibly_damaging(0.512) TCGA-AO-A03M-01 1 210012259 210012259 G A DIEXF Silent p.L356L 0.14 TCGA-AO-A03M-01 1 214170683 214170683 G C PROX1 Missense_Mutation p.D269H 0.11 tolerated(0.23) benign(0.007) TCGA-AO-A03M-01 1 22016590 22016590 G T USP48 Silent p.I962I 0.08 TCGA-AO-A03M-01 1 223177017 223177017 C A DISP1 Missense_Mutation p.P760T 0.14 deleterious(0) possibly_damaging(0.874) TCGA-AO-A03M-01 1 223177080 223177080 G A DISP1 Missense_Mutation p.E781K 0.09 deleterious(0.02) probably_damaging(0.914) TCGA-AO-A03M-01 1 223178370 223178370 G T DISP1 Nonsense_Mutation p.E1211* 0.20 TCGA-AO-A03M-01 1 225492695 225492695 G A DNAH14 Missense_Mutation p.G2224E 0.08 tolerated(0.2) probably_damaging(0.951) TCGA-AO-A03M-01 1 227219069 227219069 G C CDC42BPA Silent p.V1200V 0.11 TCGA-AO-A03M-01 1 233136210 233136210 C T PCNXL2 Silent p.K1723K 0.10 TCGA-AO-A03M-01 1 234527427 234527427 G C TARBP1 Missense_Mutation p.Q1588E 0.15 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 1 234527481 234527481 C T TARBP1 Missense_Mutation p.E1570K 0.12 deleterious(0) probably_damaging(0.983) TCGA-AO-A03M-01 1 235883977 235883977 C T LYST Missense_Mutation p.D3182N 0.07 tolerated(0.15) benign(0.353) TCGA-AO-A03M-01 1 235916501 235916501 C G LYST Missense_Mutation p.E2435Q 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-AO-A03M-01 1 236201532 236201532 G A NID1 Missense_Mutation p.S386F 0.13 deleterious(0.01) benign(0.014) TCGA-AO-A03M-01 1 237054476 237054476 G C MTR Silent p.L1017L 0.09 TCGA-AO-A03M-01 1 238090490 238090490 C G RP11-193H5.1 RNA 0.08 TCGA-AO-A03M-01 1 240656326 240656326 C T GREM2 Silent p.Q150Q 0.24 TCGA-AO-A03M-01 1 245020071 245020071 C G HNRNPU Missense_Mutation p.E568Q 0.14 tolerated(0.5) unknown(0) TCGA-AO-A03M-01 1 24645959 24645959 G A GRHL3 5'UTR 0.11 TCGA-AO-A03M-01 1 246729405 246729405 C T TFB2M Silent p.L12L 0.12 TCGA-AO-A03M-01 1 246922379 246922379 C G SCCPDH Missense_Mutation p.P247A 0.14 deleterious(0.01) possibly_damaging(0.612) TCGA-AO-A03M-01 1 26795577 26795577 C G DHDDS Silent p.L320L 0.27 TCGA-AO-A03M-01 1 27272144 27272144 C T NUDC Missense_Mutation p.S304L 0.15 deleterious(0) probably_damaging(0.995) TCGA-AO-A03M-01 1 29064169 29064169 G C YTHDF2 Splice_Site p.X10_splice 0.10 TCGA-AO-A03M-01 1 32044827 32044827 C G TINAGL1 Missense_Mutation p.I111M 0.03 tolerated(0.22) benign(0.057) TCGA-AO-A03M-01 1 35321395 35321395 G C SMIM12 Missense_Mutation p.L62V 0.14 tolerated(0.29) benign(0.002) TCGA-AO-A03M-01 1 36557534 36557534 G A ADPRHL2 Silent p.L180L 0.10 TCGA-AO-A03M-01 1 40542569 40542569 C T PPT1 Missense_Mutation p.R248K 0.10 tolerated(1) benign(0.001) TCGA-AO-A03M-01 1 40929122 40929122 C T ZFP69B Missense_Mutation p.S489F 0.14 tolerated(0.05) possibly_damaging(0.859) TCGA-AO-A03M-01 1 42047751 42047751 C G HIVEP3 Missense_Mutation p.K906N 0.07 probably_damaging(0.997) TCGA-AO-A03M-01 1 42730838 42730838 G A FOXJ3 Missense_Mutation p.S131L 0.15 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 1 43814957 43814957 C G MPL Missense_Mutation p.L498V 0.14 tolerated(0.49) benign(0.123) TCGA-AO-A03M-01 1 43827979 43827979 C G CDC20 Silent p.L439L 0.16 TCGA-AO-A03M-01 1 43896998 43896998 C G SZT2 Nonsense_Mutation p.S1603* 0.18 TCGA-AO-A03M-01 1 44137198 44137198 C G KDM4A Silent p.V462V 0.16 TCGA-AO-A03M-01 1 45796988 45796988 G C MUTYH Missense_Mutation p.H445D 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 1 46087134 46087134 C G CCDC17 Missense_Mutation p.D403H 0.15 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 1 47048952 47048952 C T MKNK1 Silent p.R28R 0.17 TCGA-AO-A03M-01 1 47403000 47403000 G A CYP4A11 Missense_Mutation p.S119F 0.22 tolerated(0.71) benign(0.009) TCGA-AO-A03M-01 1 48865252 48865252 G C SPATA6 Nonsense_Mutation p.S184* 0.06 TCGA-AO-A03M-01 1 48877186 48877186 G T SPATA6 Missense_Mutation p.H119N 0.24 tolerated(0.07) probably_damaging(0.946) TCGA-AO-A03M-01 1 51770779 51770779 C A TTC39A Nonsense_Mutation p.E214* 0.11 TCGA-AO-A03M-01 1 52850287 52850287 G C ORC1 Missense_Mutation p.Q564E 0.12 tolerated(0.16) benign(0.008) TCGA-AO-A03M-01 1 53370736 53370736 C G ECHDC2 Missense_Mutation p.E162Q 0.09 deleterious(0) possibly_damaging(0.755) TCGA-AO-A03M-01 1 54670807 54670807 C T MRPL37 Silent p.L155L 0.19 TCGA-AO-A03M-01 1 55119150 55119150 G C MROH7 Missense_Mutation p.R184T 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-AO-A03M-01 1 55148339 55148339 G C MROH7 Missense_Mutation p.E798Q 0.07 deleterious(0.03) benign(0.221) TCGA-AO-A03M-01 1 55272746 55272746 C T C1orf177 Missense_Mutation p.S61F 0.15 tolerated(0.07) probably_damaging(0.954) TCGA-AO-A03M-01 1 60302572 60302572 C T HOOK1 Missense_Mutation p.P168S 0.16 tolerated(0.52) benign(0.007) TCGA-AO-A03M-01 1 6172237 6172237 G C CHD5 Missense_Mutation p.F1701L 0.29 tolerated(0.65) benign(0.004) TCGA-AO-A03M-01 1 62739678 62739678 G A KANK4 Silent p.V366V 0.07 TCGA-AO-A03M-01 1 63067520 63067520 C G ANGPTL3 Missense_Mutation p.Q268E 0.10 tolerated(1) benign(0.002) TCGA-AO-A03M-01 1 6589194 6589194 G C NOL9 Missense_Mutation p.S562C 0.05 tolerated(0.67) benign(0.114) TCGA-AO-A03M-01 1 67206375 67206375 C T SGIP1 Missense_Mutation p.P757S 0.17 tolerated(0.39) benign(0.02) TCGA-AO-A03M-01 1 6738481 6738481 C T DNAJC11 Silent p.K83K 0.22 TCGA-AO-A03M-01 1 68895600 68895600 C G RPE65 Silent p.L487L 0.06 TCGA-AO-A03M-01 1 74832940 74832940 G A FPGT-TNNI3K Missense_Mutation p.G507E 0.09 deleterious(0.01) possibly_damaging(0.517) TCGA-AO-A03M-01 1 77509966 77509966 G C ST6GALNAC5 Missense_Mutation p.Q113H 0.14 benign(0.01) TCGA-AO-A03M-01 1 7806023 7806023 G C CAMTA1 Missense_Mutation p.E1497Q 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-AO-A03M-01 1 79472337 79472337 C T ELTD1 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-AO-A03M-01 1 90470570 90470570 C T ZNF326 Missense_Mutation p.R24C 0.12 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-AO-A03M-01 1 92515873 92515873 G A EPHX4 Splice_Site p.X202_splice 0.10 TCGA-AO-A03M-01 1 92648114 92648114 C G KIAA1107 Missense_Mutation p.S1187C 0.17 deleterious(0.02) possibly_damaging(0.853) TCGA-AO-A03M-01 1 93599671 93599671 C T MTF2 Missense_Mutation p.S448L 0.08 tolerated(0.26) benign(0.244) TCGA-AO-A03M-01 1 93711671 93711671 G C CCDC18 Missense_Mutation p.K1050N 0.11 deleterious(0.02) possibly_damaging(0.786) TCGA-AO-A03M-01 1 94343226 94343226 C T DNTTIP2 Missense_Mutation p.E89K 0.16 deleterious(0) probably_damaging(0.929) TCGA-AO-A03M-01 1 95001660 95001660 G A F3 Silent p.L91L 0.08 TCGA-AO-A03M-01 20 10025178 10025178 G C ANKEF1 Missense_Mutation p.G228A 0.03 deleterious(0.01) probably_damaging(1) TCGA-AO-A03M-01 20 10273820 10273820 C T SNAP25 Missense_Mutation p.R59C 0.04 deleterious(0.02) possibly_damaging(0.8) TCGA-AO-A03M-01 20 10393569 10393569 C G MKKS Missense_Mutation p.K198N 0.07 deleterious(0.03) benign(0.078) TCGA-AO-A03M-01 20 11899181 11899181 G A BTBD3 Silent p.Q86Q 0.03 TCGA-AO-A03M-01 20 13763546 13763546 G C ESF1 Missense_Mutation p.L81V 0.04 tolerated(0.23) probably_damaging(0.991) TCGA-AO-A03M-01 20 13765873 13765873 G C NDUFAF5 Missense_Mutation p.R53S 0.07 tolerated(0.14) benign(0.356) TCGA-AO-A03M-01 20 16509078 16509078 C G KIF16B Missense_Mutation p.D19H 0.02 deleterious(0.01) probably_damaging(0.94) TCGA-AO-A03M-01 20 17479676 17479676 G C BFSP1 Missense_Mutation p.L249V 0.02 deleterious(0.02) probably_damaging(0.95) TCGA-AO-A03M-01 20 20026077 20026077 C T CRNKL1 Missense_Mutation p.E387K 0.13 tolerated(0.12) benign(0.304) TCGA-AO-A03M-01 20 23473604 23473604 C G CST8 Missense_Mutation p.L81V 0.10 tolerated(0.2) benign(0.06) TCGA-AO-A03M-01 20 23666414 23666414 C T CST4 3'UTR 0.23 TCGA-AO-A03M-01 20 279363 279363 G A ZCCHC3 Missense_Mutation p.R379Q 0.10 tolerated(0.28) benign(0.008) TCGA-AO-A03M-01 20 2797596 2797596 G A TMEM239 Missense_Mutation p.E223K 0.04 deleterious_low_confidence(0) benign(0) TCGA-AO-A03M-01 20 30064438 30064438 G C REM1 Missense_Mutation p.D64H 0.20 tolerated(0.13) benign(0.221) TCGA-AO-A03M-01 20 30363692 30363692 G A TPX2 Missense_Mutation p.E211K 0.12 deleterious(0) probably_damaging(0.997) TCGA-AO-A03M-01 20 3128582 3128582 C T FASTKD5 Missense_Mutation p.E379K 0.06 tolerated(1) benign(0.008) TCGA-AO-A03M-01 20 35293685 35293685 C T NDRG3 Missense_Mutation p.E238K 0.13 deleterious(0.05) benign(0.018) TCGA-AO-A03M-01 20 35381094 35381094 C G DSN1 3'UTR 0.08 TCGA-AO-A03M-01 20 35399512 35399512 G A DSN1 Missense_Mutation p.A40V 0.09 deleterious_low_confidence(0.03) benign(0.023) TCGA-AO-A03M-01 20 3725696 3725696 C G HSPA12B Silent p.L138L 0.06 TCGA-AO-A03M-01 20 37580527 37580527 C T FAM83D Silent p.F404F 0.15 TCGA-AO-A03M-01 20 4202161 4202161 C G ADRA1D 3'UTR 0.13 TCGA-AO-A03M-01 20 42979367 42979367 C G R3HDML Missense_Mutation p.Q233E 0.09 deleterious(0.03) benign(0.045) TCGA-AO-A03M-01 20 43108995 43108995 C T TTPAL Missense_Mutation p.S119L 0.21 deleterious(0) probably_damaging(0.962) TCGA-AO-A03M-01 20 43836652 43836652 C G SEMG1 Silent p.L238L 0.05 TCGA-AO-A03M-01 20 44037637 44037637 C G DBNDD2 Intron 0.14 TCGA-AO-A03M-01 20 44044963 44044963 C G PIGT Missense_Mutation p.S56W 0.09 deleterious(0) probably_damaging(0.941) TCGA-AO-A03M-01 20 44258438 44258438 G A WFDC10A 5'UTR 0.09 TCGA-AO-A03M-01 20 44691046 44691046 C G NCOA5 Missense_Mutation p.D545H 0.11 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 20 45354754 45354754 A G SLC2A10 Missense_Mutation p.N360S 0.06 tolerated(1) benign(0.001) TCGA-AO-A03M-01 20 45938930 45938930 C G ZMYND8 Missense_Mutation p.R35T 0.04 deleterious_low_confidence(0) benign(0.423) TCGA-AO-A03M-01 20 46294657 46294657 C T SULF2 Missense_Mutation p.D616N 0.06 tolerated(0.33) benign(0.263) TCGA-AO-A03M-01 20 46311895 46311895 C G SULF2 Missense_Mutation p.E303Q 0.05 tolerated(0.05) probably_damaging(0.982) TCGA-AO-A03M-01 20 4721316 4721316 C G PRNT 5'Flank 0.06 TCGA-AO-A03M-01 20 47635470 47635470 C G ARFGEF2 Missense_Mutation p.S1520C 0.08 deleterious(0.01) possibly_damaging(0.662) TCGA-AO-A03M-01 20 48273184 48273184 C G B4GALT5 Silent p.V57V 0.06 TCGA-AO-A03M-01 20 4848435 4848435 C G SLC23A2 Missense_Mutation p.G446A 0.05 tolerated(0.18) probably_damaging(0.999) TCGA-AO-A03M-01 20 48699337 48699337 G C UBE2V1 Missense_Mutation p.Q161E 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-AO-A03M-01 20 50225060 50225060 G C ATP9A Silent p.L914L 0.06 TCGA-AO-A03M-01 20 50406698 50406698 C T SALL4 Missense_Mutation p.R775Q 0.06 tolerated(0.13) benign(0.008) TCGA-AO-A03M-01 20 51873044 51873044 C T TSHZ2 Missense_Mutation p.T1016M 0.07 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 20 55758893 55758893 G A BMP7 Silent p.F281F 0.05 TCGA-AO-A03M-01 20 60794791 60794791 G C HRH3 Missense_Mutation p.S79C 0.17 deleterious(0) possibly_damaging(0.866) TCGA-AO-A03M-01 20 61537278 61537278 C T DIDO1 Missense_Mutation p.E517K 0.04 possibly_damaging(0.64) TCGA-AO-A03M-01 20 62608706 62608706 C T SAMD10 Missense_Mutation p.E49K 0.17 deleterious(0) probably_damaging(0.936) TCGA-AO-A03M-01 20 62871771 62871771 C G MYT1 Missense_Mutation p.I1112M 0.24 probably_damaging(0.998) TCGA-AO-A03M-01 20 7894854 7894854 G C HAO1 Missense_Mutation p.L168V 0.04 tolerated(0.3) benign(0.001) TCGA-AO-A03M-01 21 37732314 37732314 G C MORC3 Missense_Mutation p.D424H 0.13 deleterious(0) probably_damaging(0.996) TCGA-AO-A03M-01 21 37741289 37741289 G C MORC3 Missense_Mutation p.L541F 0.12 tolerated(0.41) benign(0.003) TCGA-AO-A03M-01 21 38139574 38139574 C G HLCS Missense_Mutation p.Q488H 0.13 tolerated(0.55) possibly_damaging(0.571) TCGA-AO-A03M-01 21 38538681 38538681 C T TTC3 Missense_Mutation p.H1389Y 0.10 tolerated(0.58) benign(0.222) TCGA-AO-A03M-01 21 38862514 38862514 C G DYRK1A Silent p.L234L 0.05 TCGA-AO-A03M-01 21 40646332 40646332 G A BRWD1 Silent p.S404S 0.08 TCGA-AO-A03M-01 21 41137565 41137565 C G IGSF5 Silent p.L68L 0.14 TCGA-AO-A03M-01 21 43280475 43280475 C G PRDM15 Missense_Mutation p.E300Q 0.25 deleterious_low_confidence(0.02) benign(0.011) TCGA-AO-A03M-01 21 48064220 48064220 C A PRMT2 Silent p.L49L 0.17 TCGA-AO-A03M-01 22 18210154 18210154 G A BCL2L13 Missense_Mutation p.E438K 0.10 tolerated_low_confidence(0.13) probably_damaging(0.987) TCGA-AO-A03M-01 22 22842434 22842434 C G ZNF280B Missense_Mutation p.K430N 0.07 deleterious(0.04) possibly_damaging(0.456) TCGA-AO-A03M-01 22 23655135 23655135 G T BCR Silent p.L1128L 0.22 TCGA-AO-A03M-01 22 24121532 24121532 G C MMP11 Silent p.L89L 0.33 TCGA-AO-A03M-01 22 24129447 24129447 G A SMARCB1 Missense_Mutation p.E31K 0.47 deleterious(0) benign(0.386) TCGA-AO-A03M-01 22 36587940 36587940 G C APOL4 Silent p.L79L 0.11 TCGA-AO-A03M-01 22 40139707 40139707 C T ENTHD1 Missense_Mutation p.E601K 0.11 tolerated(0.24) unknown(0) TCGA-AO-A03M-01 22 44011765 44011765 C G EFCAB6 Missense_Mutation p.E835Q 0.11 deleterious(0.01) possibly_damaging(0.703) TCGA-AO-A03M-01 22 46859955 46859955 C G CELSR1 Missense_Mutation p.E1278Q 0.12 tolerated(0.23) probably_damaging(0.999) TCGA-AO-A03M-01 22 50688962 50688962 G A HDAC10 Intron 0.28 TCGA-AO-A03M-01 22 51143274 51143274 G C SHANK3 Missense_Mutation p.G643A 0.14 probably_damaging(1) TCGA-AO-A03M-01 2 102792914 102792914 G C IL1R1 Missense_Mutation p.E469Q 0.10 deleterious(0.01) possibly_damaging(0.819) TCGA-AO-A03M-01 2 107021533 107021533 G C RGPD3 3'UTR 0.26 TCGA-AO-A03M-01 2 109003835 109003835 G C SULT1C4 Missense_Mutation p.D286H 0.09 tolerated(0.45) benign(0.083) TCGA-AO-A03M-01 2 11798750 11798750 G C NTSR2 Missense_Mutation p.S363C 0.11 deleterious(0) probably_damaging(0.937) TCGA-AO-A03M-01 2 118582644 118582644 G A DDX18 Silent p.L445L 0.12 TCGA-AO-A03M-01 2 121747939 121747939 C G GLI2 Missense_Mutation p.I1483M 0.15 tolerated(0.25) benign(0.055) TCGA-AO-A03M-01 2 122494471 122494471 C T NIFK 5'UTR 0.57 TCGA-AO-A03M-01 2 122522952 122522952 C G TSN 3'UTR 0.10 TCGA-AO-A03M-01 2 128605740 128605740 C G POLR2D Missense_Mutation p.D124H 0.13 deleterious(0) probably_damaging(0.969) TCGA-AO-A03M-01 2 133426009 133426009 C T LYPD1 Missense_Mutation p.D52N 0.11 tolerated(0.09) probably_damaging(0.987) TCGA-AO-A03M-01 2 136622641 136622641 C G MCM6 Missense_Mutation p.M340I 0.28 deleterious(0.01) probably_damaging(1) TCGA-AO-A03M-01 2 152352825 152352825 C G NEB Missense_Mutation p.E8151Q 0.12 possibly_damaging(0.607) TCGA-AO-A03M-01 2 152472569 152472569 G A NEB Silent p.L3746L 0.16 TCGA-AO-A03M-01 2 163039979 163039979 C G FAP Splice_Site p.X605_splice 0.14 TCGA-AO-A03M-01 2 166172242 166172242 G C SCN2A Missense_Mutation p.E549Q 0.25 tolerated(0.19) benign(0.398) TCGA-AO-A03M-01 2 169658951 169658951 G A NOSTRIN 5'UTR 0.19 TCGA-AO-A03M-01 2 170029697 170029697 G C LRP2 Missense_Mutation p.F3684L 0.13 probably_damaging(0.999) TCGA-AO-A03M-01 2 171867908 171867908 C G TLK1 Missense_Mutation p.R464T 0.10 deleterious(0) probably_damaging(0.969) TCGA-AO-A03M-01 2 172683316 172683316 G A SLC25A12 Nonsense_Mutation p.Q308* 0.13 TCGA-AO-A03M-01 2 179431052 179431052 C G TTN Missense_Mutation p.V26603L 0.07 TCGA-AO-A03M-01 2 179455523 179455523 C T TTN Missense_Mutation p.R20310H 0.11 TCGA-AO-A03M-01 2 179981441 179981441 G A SESTD1 Missense_Mutation p.T534M 0.10 deleterious(0.01) possibly_damaging(0.826) TCGA-AO-A03M-01 2 179997028 179997028 C G SESTD1 Intron 0.17 TCGA-AO-A03M-01 2 183866923 183866923 A C NCKAP1 Silent p.S154S 0.09 TCGA-AO-A03M-01 2 191233908 191233908 C T INPP1 Silent p.V182V 0.11 TCGA-AO-A03M-01 2 201436072 201436072 G A SGOL2 Missense_Mutation p.E335K 0.30 tolerated(0.27) benign(0.023) TCGA-AO-A03M-01 2 202614505 202614505 G A ALS2 Missense_Mutation p.S582L 0.14 deleterious(0) probably_damaging(0.984) TCGA-AO-A03M-01 2 207509176 207509176 C T AC010731.4 RNA 0.14 TCGA-AO-A03M-01 2 211306037 211306037 G A LANCL1 Nonsense_Mutation p.Q180* 0.09 TCGA-AO-A03M-01 2 216809556 216809556 G A MREG 3'UTR 0.12 TCGA-AO-A03M-01 2 218925065 218925065 G C CXCR2P1 RNA 0.14 TCGA-AO-A03M-01 2 220115764 220115764 G A TUBA4A Silent p.I219I 0.26 TCGA-AO-A03M-01 2 220473894 220473894 C T STK11IP Missense_Mutation p.R640C 0.14 tolerated(0.06) probably_damaging(0.997) TCGA-AO-A03M-01 2 224856574 224856574 C T SERPINE2 Missense_Mutation p.D223N 0.08 tolerated(0.13) benign(0.355) TCGA-AO-A03M-01 2 225378295 225378295 G A CUL3 Silent p.V200V 0.10 TCGA-AO-A03M-01 2 231155266 231155266 G T SP140 Missense_Mutation p.K604N 0.13 deleterious(0) probably_damaging(0.95) TCGA-AO-A03M-01 2 234746277 234746277 C A HJURP Missense_Mutation p.R731S 0.11 tolerated(0.51) benign(0.005) TCGA-AO-A03M-01 2 234749380 234749380 T A HJURP Missense_Mutation p.R682S 0.14 deleterious(0.03) probably_damaging(0.981) TCGA-AO-A03M-01 2 234862563 234862563 C G TRPM8 Silent p.L381L 0.10 TCGA-AO-A03M-01 2 238990391 238990391 G C SCLY Missense_Mutation p.E184Q 0.20 tolerated(0.06) benign(0.075) TCGA-AO-A03M-01 2 239307594 239307594 C G TRAF3IP1 3'UTR 0.26 TCGA-AO-A03M-01 2 241676565 241676565 C A KIF1A Nonsense_Mutation p.E1308* 0.11 TCGA-AO-A03M-01 2 24305887 24305887 C T TP53I3 Missense_Mutation p.G92S 0.21 deleterious(0.02) probably_damaging(0.942) TCGA-AO-A03M-01 2 24952396 24952396 G C NCOA1 Missense_Mutation p.E971D 0.17 tolerated(0.46) benign(0.013) TCGA-AO-A03M-01 2 25141245 25141245 G A ADCY3 Silent p.V204V 0.17 TCGA-AO-A03M-01 2 26399224 26399224 G A GAREML Missense_Mutation p.E42K 0.11 deleterious(0) probably_damaging(0.929) TCGA-AO-A03M-01 2 26437956 26437956 C G HADHA Missense_Mutation p.K255N 0.14 tolerated(0.06) benign(0.082) TCGA-AO-A03M-01 2 27802182 27802182 G C C2orf16 Missense_Mutation p.E915Q 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-AO-A03M-01 2 28268663 28268663 C G BRE Silent p.L189L 0.13 TCGA-AO-A03M-01 2 29296153 29296153 C T C2orf71 Silent p.L325L 0.11 TCGA-AO-A03M-01 2 3660912 3660912 G C COLEC11 Missense_Mutation p.E62Q 0.12 tolerated(0.05) benign(0.021) TCGA-AO-A03M-01 2 3729280 3729280 G C ALLC Missense_Mutation p.E119Q 0.16 tolerated(0.1) benign(0.292) TCGA-AO-A03M-01 2 38791320 38791320 C G HNRNPLL 3'UTR 0.09 TCGA-AO-A03M-01 2 38791380 38791380 C G HNRNPLL Splice_Site p.X520_splice 0.06 TCGA-AO-A03M-01 2 39053705 39053705 G A DHX57 Silent p.I922I 0.09 TCGA-AO-A03M-01 2 44123829 44123829 C T LRPPRC Missense_Mutation p.E1282K 0.12 deleterious(0) probably_damaging(0.967) TCGA-AO-A03M-01 2 44126455 44126455 C G LRPPRC Missense_Mutation p.R1243T 0.10 deleterious(0) probably_damaging(0.963) TCGA-AO-A03M-01 2 44126722 44126722 C G LRPPRC Missense_Mutation p.E1198Q 0.07 deleterious(0) possibly_damaging(0.703) TCGA-AO-A03M-01 2 55143898 55143898 C G EML6 Missense_Mutation p.I1167M 0.14 tolerated(0.08) benign(0.018) TCGA-AO-A03M-01 2 61145531 61145531 G C REL Missense_Mutation p.D215H 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 2 64322141 64322141 G A PELI1 Missense_Mutation p.H318Y 0.11 deleterious(0) possibly_damaging(0.612) TCGA-AO-A03M-01 2 69709701 69709701 G C AAK1 Intron 0.29 TCGA-AO-A03M-01 2 70164430 70164430 C T MXD1 Missense_Mutation p.H128Y 0.36 tolerated(0.67) benign(0.028) TCGA-AO-A03M-01 2 70475661 70475661 C G TIA1 5'UTR 0.17 TCGA-AO-A03M-01 2 73451124 73451124 G A SMYD5 Silent p.Q311Q 0.23 TCGA-AO-A03M-01 2 73452827 73452827 C T SMYD5 Silent p.L368L 0.17 TCGA-AO-A03M-01 2 74275429 74275429 C G TET3 Silent p.L660L 0.14 TCGA-AO-A03M-01 2 75104436 75104436 C T HK2 Missense_Mutation p.S340L 0.15 tolerated(0.24) possibly_damaging(0.723) TCGA-AO-A03M-01 2 85852772 85852772 G C USP39 Silent p.L227L 0.10 TCGA-AO-A03M-01 2 96657421 96657421 G A ANKRD36C Silent p.L12L 0.13 TCGA-AO-A03M-01 2 98275455 98275455 G A ACTR1B Silent p.L109L 0.14 TCGA-AO-A03M-01 2 98428930 98428930 G A TMEM131 Missense_Mutation p.S606L 0.14 tolerated(0.08) benign(0.024) TCGA-AO-A03M-01 2 99170793 99170793 G C INPP4A Silent p.L474L 0.10 TCGA-AO-A03M-01 3 100362199 100362199 C T GPR128 Missense_Mutation p.S263F 0.15 deleterious(0.04) benign(0.287) TCGA-AO-A03M-01 3 10183591 10183591 C T VHL Silent p.V20V 0.33 TCGA-AO-A03M-01 3 10392112 10392112 G C ATP2B2 Missense_Mutation p.F762L 0.18 deleterious(0.01) possibly_damaging(0.497) TCGA-AO-A03M-01 3 108133098 108133098 C G MYH15 Missense_Mutation p.E1396Q 0.11 deleterious(0.01) probably_damaging(1) TCGA-AO-A03M-01 3 108224632 108224632 C T MYH15 Missense_Mutation p.E65K 0.17 tolerated(1) possibly_damaging(0.635) TCGA-AO-A03M-01 3 111860106 111860106 C T SLC9C1 3'UTR 0.27 TCGA-AO-A03M-01 3 112358352 112358352 G A CCDC80 Missense_Mutation p.S134L 0.24 deleterious(0.03) possibly_damaging(0.602) TCGA-AO-A03M-01 3 113046579 113046579 C T WDR52 Missense_Mutation p.D1402N 0.21 deleterious(0.04) possibly_damaging(0.743) TCGA-AO-A03M-01 3 119396138 119396138 G C COX17 Nonsense_Mutation p.S7* 0.11 TCGA-AO-A03M-01 3 121409645 121409645 C T GOLGB1 Missense_Mutation p.E2856K 0.10 probably_damaging(0.997) TCGA-AO-A03M-01 3 121825137 121825137 G A CD86 Missense_Mutation p.E165K 0.11 tolerated(0.58) benign(0.163) TCGA-AO-A03M-01 3 129134099 129134099 G C EFCAB12 Missense_Mutation p.T276S 0.11 tolerated(0.12) benign(0.022) TCGA-AO-A03M-01 3 129694818 129694818 C G TRH Silent p.L53L 0.17 TCGA-AO-A03M-01 3 130289659 130289659 C T COL6A6 Intron 0.20 TCGA-AO-A03M-01 3 143185984 143185984 G A SLC9A9 Missense_Mutation p.S455F 0.12 deleterious(0) probably_damaging(0.966) TCGA-AO-A03M-01 3 143292948 143292948 C T SLC9A9 Missense_Mutation p.E328K 0.11 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 3 145794663 145794663 G C PLOD2 Missense_Mutation p.S528C 0.15 deleterious(0) benign(0.038) TCGA-AO-A03M-01 3 14706596 14706596 C T CCDC174 Silent p.L183L 0.17 TCGA-AO-A03M-01 3 148930334 148930334 C T CP Missense_Mutation p.E100K 0.12 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 3 153994555 153994555 C G DHX36 Missense_Mutation p.R941T 0.08 tolerated(0.09) benign(0.146) TCGA-AO-A03M-01 3 156396104 156396104 G A TIPARP Silent p.L206L 0.10 TCGA-AO-A03M-01 3 160786886 160786886 G A PPM1L Missense_Mutation p.D342N 0.11 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 3 167250737 167250737 C A WDR49 Missense_Mutation p.W309C 0.16 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 3 172525638 172525638 C G ECT2 Nonsense_Mutation p.S775* 0.07 TCGA-AO-A03M-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-AO-A03M-01 3 179322717 179322717 G T NDUFB5 Silent p.P38P 0.09 TCGA-AO-A03M-01 3 182738007 182738007 C A MCCC1 Missense_Mutation p.D630Y 0.10 tolerated(0.07) benign(0.125) TCGA-AO-A03M-01 3 183777613 183777613 C T HTR3C Intron 0.09 TCGA-AO-A03M-01 3 183855691 183855691 G C EIF2B5 Missense_Mutation p.R171T 0.12 tolerated(0.06) possibly_damaging(0.761) TCGA-AO-A03M-01 3 184091276 184091276 G A THPO Missense_Mutation p.S108L 0.19 deleterious(0) probably_damaging(0.988) TCGA-AO-A03M-01 3 18438718 18438718 T A SATB1 Missense_Mutation p.E235V 0.15 deleterious(0) possibly_damaging(0.893) TCGA-AO-A03M-01 3 18438719 18438719 C G SATB1 Missense_Mutation p.E235Q 0.15 deleterious(0) possibly_damaging(0.893) TCGA-AO-A03M-01 3 184566867 184566867 C G VPS8 Missense_Mutation p.Q184E 0.09 deleterious(0) probably_damaging(0.986) TCGA-AO-A03M-01 3 18456713 18456713 C G SATB1 Missense_Mutation p.E177Q 0.14 deleterious(0) possibly_damaging(0.836) TCGA-AO-A03M-01 3 184637951 184637951 G C VPS8 Missense_Mutation p.E807Q 0.09 tolerated(0.19) benign(0.17) TCGA-AO-A03M-01 3 185337233 185337233 C G SENP2 Silent p.L463L 0.10 TCGA-AO-A03M-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.23 tolerated(0.19) possibly_damaging(0.569) TCGA-AO-A03M-01 3 193081941 193081941 G A ATP13A5 Silent p.I64I 0.35 TCGA-AO-A03M-01 3 195706630 195706630 G A SDHAP1 RNA 0.25 TCGA-AO-A03M-01 3 196050627 196050627 G C TM4SF19 3'UTR 0.11 TCGA-AO-A03M-01 3 196663820 196663820 G A NCBP2 3'UTR 0.13 TCGA-AO-A03M-01 3 196771505 196771505 C G DLG1 Missense_Mutation p.E924Q 0.17 deleterious(0) probably_damaging(0.916) TCGA-AO-A03M-01 3 196803476 196803476 C T DLG1 Silent p.Q695Q 0.08 TCGA-AO-A03M-01 3 38646307 38646307 C G SCN5A Missense_Mutation p.K477N 0.15 tolerated(0.12) possibly_damaging(0.81) TCGA-AO-A03M-01 3 39179860 39179860 C A TTC21A Missense_Mutation p.H1267N 0.24 deleterious(0.02) benign(0.063) TCGA-AO-A03M-01 3 39226263 39226263 G A XIRP1 Silent p.L1558L 0.17 TCGA-AO-A03M-01 3 40529818 40529818 C G ZNF619 3'UTR 0.17 TCGA-AO-A03M-01 3 44310707 44310707 G C TOPAZ1 Splice_Site p.X1054_splice 0.09 TCGA-AO-A03M-01 3 46592974 46592974 C T LRRC2 Silent p.E36E 0.19 TCGA-AO-A03M-01 3 49753337 49753337 C G RNF123 Missense_Mutation p.S1078W 0.18 deleterious(0) probably_damaging(0.993) TCGA-AO-A03M-01 3 49840825 49840825 C A FAM212A Missense_Mutation p.D2E 0.16 tolerated_low_confidence(0.76) benign(0) TCGA-AO-A03M-01 3 52283691 52283691 C G PPM1M Nonsense_Mutation p.S202* 0.20 TCGA-AO-A03M-01 3 52637660 52637660 G C PBRM1 Missense_Mutation p.L886V 0.12 deleterious(0) benign(0.109) TCGA-AO-A03M-01 3 52839834 52839834 G A ITIH3 Silent p.V628V 0.29 TCGA-AO-A03M-01 3 53766067 53766067 G C CACNA1D Missense_Mutation p.E831Q 0.11 tolerated(0.15) benign(0.02) TCGA-AO-A03M-01 3 71821784 71821784 C G PROK2 3'UTR 0.24 TCGA-AO-A03M-01 3 97503846 97503846 G C ARL6 Missense_Mutation p.R101T 0.13 deleterious(0.03) possibly_damaging(0.832) TCGA-AO-A03M-01 3 98237836 98237836 G A CLDND1 Missense_Mutation p.S122L 0.15 tolerated(0.25) benign(0.222) TCGA-AO-A03M-01 4 100738056 100738056 C G DAPP1 5'UTR 0.36 TCGA-AO-A03M-01 4 1017651 1017651 C T FGFRL1 Silent p.I160I 0.20 TCGA-AO-A03M-01 4 104577395 104577395 C G TACR3 Missense_Mutation p.D282H 0.33 tolerated(0.13) possibly_damaging(0.448) TCGA-AO-A03M-01 4 123855596 123855596 G C SPATA5 Missense_Mutation p.E284Q 0.08 tolerated(0.17) benign(0.005) TCGA-AO-A03M-01 4 140187981 140187981 C T MGARP Silent p.A165A 0.10 TCGA-AO-A03M-01 4 144457714 144457714 C T SMARCA5 Missense_Mutation p.P460S 0.13 deleterious(0.03) probably_damaging(0.965) TCGA-AO-A03M-01 4 151356758 151356758 C T LRBA Missense_Mutation p.D2353N 0.07 tolerated(0.06) probably_damaging(0.998) TCGA-AO-A03M-01 4 151738374 151738374 G A LRBA Missense_Mutation p.S1736L 0.09 tolerated(0.49) benign(0) TCGA-AO-A03M-01 4 151850194 151850194 C T LRBA Silent p.L80L 0.23 TCGA-AO-A03M-01 4 152065424 152065424 C T SH3D19 Missense_Mutation p.G420E 0.15 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 4 169433483 169433483 G C PALLD Missense_Mutation p.K276N 0.21 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 4 17581545 17581545 G C LAP3 Silent p.L67L 0.10 TCGA-AO-A03M-01 4 175898228 175898228 G A ADAM29 Missense_Mutation p.E518K 0.21 tolerated(0.25) benign(0.042) TCGA-AO-A03M-01 4 175899176 175899176 C T ADAM29 3'UTR 0.14 TCGA-AO-A03M-01 4 17654468 17654468 G C FAM184B Missense_Mutation p.Q726E 0.11 deleterious(0) possibly_damaging(0.742) TCGA-AO-A03M-01 4 17782862 17782862 C G FAM184B Missense_Mutation p.D21H 0.12 deleterious(0.04) probably_damaging(0.913) TCGA-AO-A03M-01 4 184587551 184587551 G A TRAPPC11 Missense_Mutation p.E116K 0.12 deleterious(0.01) benign(0.292) TCGA-AO-A03M-01 4 186998036 186998036 C G TLR3 Nonsense_Mutation p.S88* 0.14 TCGA-AO-A03M-01 4 187524902 187524902 G C FAT1 Missense_Mutation p.S3593C 0.10 probably_damaging(0.984) TCGA-AO-A03M-01 4 190862037 190862037 G A FRG1 5'UTR 0.27 TCGA-AO-A03M-01 4 1991547 1991547 C G NELFA Missense_Mutation p.L155F 0.13 deleterious(0) probably_damaging(0.972) TCGA-AO-A03M-01 4 2273405 2273405 C G ZFYVE28 Missense_Mutation p.E809Q 0.09 deleterious(0.02) probably_damaging(0.98) TCGA-AO-A03M-01 4 37848851 37848851 G A PGM2 Missense_Mutation p.G406E 0.12 deleterious(0) probably_damaging(0.955) TCGA-AO-A03M-01 4 38799481 38799481 C T TLR1 Silent p.S324S 0.21 TCGA-AO-A03M-01 4 39217529 39217529 C T WDR19 Missense_Mutation p.H344Y 0.12 tolerated(0.6) benign(0.003) TCGA-AO-A03M-01 4 39450121 39450121 G A KLB Missense_Mutation p.E984K 0.08 tolerated(0.86) benign(0.003) TCGA-AO-A03M-01 4 39929686 39929686 G A PDS5A Silent p.L79L 0.10 TCGA-AO-A03M-01 4 40427930 40427930 C G RBM47 Missense_Mutation p.Q591H 0.25 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-AO-A03M-01 4 40440508 40440508 C T RBM47 Missense_Mutation p.E135K 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-AO-A03M-01 4 46252416 46252416 C T GABRA2 Missense_Mutation p.R422K 0.20 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 4 46736959 46736959 G C COX7B2 3'UTR 0.06 TCGA-AO-A03M-01 4 47676480 47676480 G C CORIN Silent p.L429L 0.14 TCGA-AO-A03M-01 4 48591845 48591845 G C FRYL Silent p.L519L 0.09 TCGA-AO-A03M-01 4 52862139 52862139 C T LRRC66 Missense_Mutation p.R350K 0.19 tolerated(1) benign(0.012) TCGA-AO-A03M-01 4 53522465 53522465 G A USP46 Intron 0.07 TCGA-AO-A03M-01 4 5630358 5630358 G A EVC2 Missense_Mutation p.S605L 0.12 tolerated(0.67) benign(0.038) TCGA-AO-A03M-01 4 5667277 5667277 G A EVC2 Nonsense_Mutation p.Q324* 0.13 TCGA-AO-A03M-01 4 57190414 57190414 C T KIAA1211 Missense_Mutation p.L1175F 0.07 deleterious(0) possibly_damaging(0.765) TCGA-AO-A03M-01 4 57891153 57891153 C T POLR2B Silent p.L1022L 0.05 TCGA-AO-A03M-01 4 73185063 73185063 C A ADAMTS3 Silent p.L446L 0.12 TCGA-AO-A03M-01 4 76898816 76898816 C T SDAD1 Missense_Mutation p.D130N 0.25 deleterious(0.03) possibly_damaging(0.74) TCGA-AO-A03M-01 4 84374871 84374871 C T HELQ Silent p.E175E 0.08 TCGA-AO-A03M-01 4 85639675 85639675 C T WDFY3 Missense_Mutation p.E2552K 0.07 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 4 87684080 87684080 G A PTPN13 Missense_Mutation p.E1252K 0.14 deleterious(0.05) probably_damaging(0.96) TCGA-AO-A03M-01 4 88106633 88106633 G C KLHL8 Missense_Mutation p.H179D 0.10 deleterious(0) probably_damaging(0.996) TCGA-AO-A03M-01 4 89060991 89060991 G A ABCG2 Silent p.L53L 0.15 TCGA-AO-A03M-01 4 89628117 89628117 C G HERC3 3'UTR 0.08 TCGA-AO-A03M-01 4 94032024 94032024 G C GRID2 Missense_Mutation p.E219Q 0.12 deleterious(0.01) possibly_damaging(0.845) TCGA-AO-A03M-01 5 120021713 120021713 C G PRR16 Missense_Mutation p.S52C 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AO-A03M-01 5 125944095 125944095 G A PHAX Silent p.V250V 0.16 TCGA-AO-A03M-01 5 130764670 130764670 G C CTC-432M15.3 Missense_Mutation p.Q1619E 0.27 deleterious_low_confidence(0.04) benign(0.028) TCGA-AO-A03M-01 5 130970776 130970776 C T RAPGEF6 5'UTR 0.12 TCGA-AO-A03M-01 5 130970849 130970849 G A RAPGEF6 5'Flank 0.33 TCGA-AO-A03M-01 5 131721159 131721159 G A SLC22A5 Silent p.T264T 0.12 TCGA-AO-A03M-01 5 133494205 133494205 C G SKP1 Missense_Mutation p.E133Q 0.29 deleterious(0.04) possibly_damaging(0.548) TCGA-AO-A03M-01 5 13777313 13777313 C T DNAH5 Missense_Mutation p.E3035K 0.09 possibly_damaging(0.621) TCGA-AO-A03M-01 5 137893642 137893642 G C HSPA9 Missense_Mutation p.Q517E 0.10 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-AO-A03M-01 5 139267074 139267074 C G NRG2 Missense_Mutation p.K241N 0.10 tolerated(0.09) possibly_damaging(0.488) TCGA-AO-A03M-01 5 140249093 140249093 C T PCDHA11 Silent p.L135L 0.13 TCGA-AO-A03M-01 5 140390267 140390267 G C PCDHAC1 3'UTR 0.19 TCGA-AO-A03M-01 5 140736007 140736007 G A PCDHGA4 Missense_Mutation p.E414K 0.15 tolerated_low_confidence(0.48) benign(0.096) TCGA-AO-A03M-01 5 141324937 141324937 G A PCDH12 3'UTR 0.30 TCGA-AO-A03M-01 5 145435644 145435644 G A SH3RF2 Missense_Mutation p.D475N 0.08 tolerated(0.32) benign(0.02) TCGA-AO-A03M-01 5 148689611 148689611 G A AFAP1L1 Silent p.K280K 0.34 TCGA-AO-A03M-01 5 148889467 148889467 G C CSNK1A1 Missense_Mutation p.S270C 0.16 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-AO-A03M-01 5 149678139 149678139 G T ARSI Silent p.I116I 0.05 TCGA-AO-A03M-01 5 149927847 149927847 C G NDST1 Missense_Mutation p.S738C 0.17 deleterious(0.04) benign(0.328) TCGA-AO-A03M-01 5 150901466 150901466 G A FAT2 Missense_Mutation p.T3563M 0.17 benign(0.063) TCGA-AO-A03M-01 5 153409138 153409138 C G FAM114A2 Missense_Mutation p.E136Q 0.14 tolerated(0.06) benign(0.128) TCGA-AO-A03M-01 5 154396044 154396044 C G KIF4B Silent p.V875V 0.12 TCGA-AO-A03M-01 5 156675886 156675886 G A ITK Missense_Mutation p.E554K 0.16 tolerated(0.15) probably_damaging(0.999) TCGA-AO-A03M-01 5 162887656 162887656 G C HMMR 5'UTR 0.18 TCGA-AO-A03M-01 5 169677830 169677830 G C LCP2 Silent p.L461L 0.13 TCGA-AO-A03M-01 5 170720958 170720958 C G RANBP17 Silent p.L1005L 0.13 TCGA-AO-A03M-01 5 171520769 171520769 C T STK10 Missense_Mutation p.E401K 0.09 tolerated(0.06) benign(0.146) TCGA-AO-A03M-01 5 175875421 175875421 G C FAF2 Missense_Mutation p.E5Q 0.14 deleterious(0.03) benign(0.116) TCGA-AO-A03M-01 5 176709505 176709505 G A NSD1 Missense_Mutation p.E1978K 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-AO-A03M-01 5 180329354 180329354 C G BTNL8 Intron 0.16 TCGA-AO-A03M-01 5 21760714 21760714 G A CDH12 Missense_Mutation p.S529L 0.08 tolerated(0.09) benign(0.013) TCGA-AO-A03M-01 5 23521163 23521163 C G PRDM9 Missense_Mutation p.S128C 0.31 deleterious_low_confidence(0.04) benign(0.206) TCGA-AO-A03M-01 5 24593522 24593522 G A CDH10 Silent p.F26F 0.10 TCGA-AO-A03M-01 5 32229814 32229814 G A MTMR12 3'UTR 0.15 TCGA-AO-A03M-01 5 33457473 33457473 G A TARS Missense_Mutation p.E350K 0.06 deleterious(0.02) possibly_damaging(0.601) TCGA-AO-A03M-01 5 35763751 35763751 G A SPEF2 Missense_Mutation p.E1250K 0.34 tolerated(0.05) probably_damaging(0.989) TCGA-AO-A03M-01 5 37379655 37379655 C T WDR70 Silent p.F30F 0.13 TCGA-AO-A03M-01 5 39316109 39316109 C T C9 Missense_Mutation p.R213K 0.16 tolerated(0.25) benign(0.066) TCGA-AO-A03M-01 5 41009477 41009477 C A MROH2B Nonsense_Mutation p.E1109* 0.21 TCGA-AO-A03M-01 5 41313815 41313815 G C PLCXD3 Missense_Mutation p.I290M 0.11 tolerated(0.1) benign(0.04) TCGA-AO-A03M-01 5 43509464 43509466 TTC CTTG C5orf34 5'UTR 0.11 TCGA-AO-A03M-01 5 43624200 43624200 A G NNT Missense_Mutation p.I252V 0.23 tolerated(0.22) benign(0.004) TCGA-AO-A03M-01 5 5237177 5237177 G C ADAMTS16 Missense_Mutation p.D707H 0.34 tolerated(0.24) benign(0.038) TCGA-AO-A03M-01 5 5457817 5457817 C T KIAA0947 Missense_Mutation p.S355L 0.08 tolerated(0.29) benign(0.004) TCGA-AO-A03M-01 5 5464694 5464694 G A KIAA0947 Silent p.V1749V 0.09 TCGA-AO-A03M-01 5 55243327 55243327 C T IL6ST Missense_Mutation p.R644Q 0.08 deleterious(0.01) probably_damaging(0.971) TCGA-AO-A03M-01 5 61763034 61763034 C G IPO11 Missense_Mutation p.S238C 0.17 tolerated(0.1) benign(0.006) TCGA-AO-A03M-01 5 74016965 74016965 C G HEXB Missense_Mutation p.L546V 0.14 tolerated(0.25) benign(0.013) TCGA-AO-A03M-01 5 78919257 78919257 G C PAPD4 Missense_Mutation p.R137P 0.10 tolerated(0.21) benign(0.002) TCGA-AO-A03M-01 5 79470782 79470782 C T SERINC5 Silent p.K182K 0.08 TCGA-AO-A03M-01 5 825363 825363 G C ZDHHC11 Silent p.V313V 0.09 TCGA-AO-A03M-01 5 90055367 90055367 G A GPR98 Missense_Mutation p.D4028N 0.26 probably_damaging(0.989) TCGA-AO-A03M-01 5 93988976 93988976 G C ANKRD32 Splice_Site p.X295_splice 0.25 TCGA-AO-A03M-01 5 94918723 94918723 G T ARSK Nonsense_Mutation p.E174* 0.24 TCGA-AO-A03M-01 5 95730639 95730639 G A PCSK1 Missense_Mutation p.R605C 0.13 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 6 100369053 100369053 C G MCHR2 Silent p.L262L 0.10 TCGA-AO-A03M-01 6 102124653 102124653 G C GRIK2 Missense_Mutation p.E233Q 0.15 tolerated(0.14) benign(0.008) TCGA-AO-A03M-01 6 108225915 108225915 G C SEC63 Missense_Mutation p.F324L 0.15 tolerated(0.34) benign(0.102) TCGA-AO-A03M-01 6 10898325 10898325 G A SYCP2L Missense_Mutation p.E140K 0.08 deleterious(0.03) possibly_damaging(0.886) TCGA-AO-A03M-01 6 109258196 109258196 G A ARMC2 Silent p.K530K 0.10 TCGA-AO-A03M-01 6 109283314 109283314 C T ARMC2 Silent p.F712F 0.11 TCGA-AO-A03M-01 6 109931708 109931708 C G AK9 Missense_Mutation p.E568Q 0.08 tolerated(0.18) possibly_damaging(0.671) TCGA-AO-A03M-01 6 110757117 110757117 G A SLC22A16 Silent p.A453A 0.10 TCGA-AO-A03M-01 6 125330358 125330358 G T RNF217 5'UTR 0.20 TCGA-AO-A03M-01 6 128150651 128150651 G C THEMIS Missense_Mutation p.P227A 0.10 deleterious(0.03) probably_damaging(1) TCGA-AO-A03M-01 6 129950623 129950623 C G ARHGAP18 Missense_Mutation p.E221Q 0.10 tolerated(0.31) benign(0.009) TCGA-AO-A03M-01 6 129959745 129959745 C T ARHGAP18 Missense_Mutation p.E116K 0.12 deleterious(0.04) benign(0.03) TCGA-AO-A03M-01 6 13228106 13228106 G A PHACTR1 Missense_Mutation p.D349N 0.07 tolerated(0.12) possibly_damaging(0.908) TCGA-AO-A03M-01 6 136599192 136599192 G A BCLAF1 Missense_Mutation p.S276F 0.08 tolerated(0.07) possibly_damaging(0.683) TCGA-AO-A03M-01 6 138413343 138413343 G A PERP Missense_Mutation p.H140Y 0.07 deleterious(0.04) benign(0.357) TCGA-AO-A03M-01 6 138531064 138531064 G C KIAA1244 Missense_Mutation p.E79D 0.08 tolerated(1) benign(0.003) TCGA-AO-A03M-01 6 1390570 1390570 C T FOXF2 Silent p.L130L 0.16 TCGA-AO-A03M-01 6 145119080 145119080 C G UTRN Missense_Mutation p.Q3067E 0.12 deleterious(0) probably_damaging(0.996) TCGA-AO-A03M-01 6 152419880 152419880 G C ESR1 Missense_Mutation p.E523Q 0.14 deleterious(0.02) possibly_damaging(0.844) TCGA-AO-A03M-01 6 152560665 152560665 C G SYNE1 Intron 0.14 TCGA-AO-A03M-01 6 152674785 152674785 C T SYNE1 Missense_Mutation p.R3674K 0.09 benign(0.031) TCGA-AO-A03M-01 6 152787177 152787177 C G SYNE1 Missense_Mutation p.E557Q 0.08 probably_damaging(0.98) TCGA-AO-A03M-01 6 154567944 154567944 G C IPCEF1 Intron 0.16 TCGA-AO-A03M-01 6 159010742 159010742 G C TMEM181 Silent p.L277L 0.13 TCGA-AO-A03M-01 6 167417805 167417805 A G FGFR1OP Silent p.E118E 0.40 TCGA-AO-A03M-01 6 17675248 17675248 G A NUP153 Missense_Mutation p.S247L 0.11 deleterious(0) probably_damaging(0.911) TCGA-AO-A03M-01 6 18264149 18264149 C T DEK Missense_Mutation p.E24K 0.13 tolerated_low_confidence(0.05) benign(0.032) TCGA-AO-A03M-01 6 24658071 24658071 C G TDP2 Missense_Mutation p.K162N 0.07 deleterious(0.01) benign(0.314) TCGA-AO-A03M-01 6 24709130 24709130 C G C6orf62 Missense_Mutation p.E147Q 0.10 tolerated(0.49) possibly_damaging(0.481) TCGA-AO-A03M-01 6 24818812 24818812 G C FAM65B Silent p.L991L 0.16 TCGA-AO-A03M-01 6 25538116 25538116 C G LRRC16A Missense_Mutation p.H701D 0.09 tolerated(0.08) possibly_damaging(0.858) TCGA-AO-A03M-01 6 26188994 26188994 C A HIST1H4D Nonstop_Mutation p.*104Lext*? 0.16 TCGA-AO-A03M-01 6 26216532 26216532 C T HIST1H2BG Missense_Mutation p.E114K 0.10 tolerated_low_confidence(0.07) benign(0.041) TCGA-AO-A03M-01 6 26234508 26234508 C G HIST1H1D Silent p.P218P 0.07 TCGA-AO-A03M-01 6 26505398 26505398 C T BTN1A1 Missense_Mutation p.L225F 0.08 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 6 27100956 27100956 C A HIST1H2AG Missense_Mutation p.R36S 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.71) TCGA-AO-A03M-01 6 27220668 27220668 C T PRSS16 Nonsense_Mutation p.Q364* 0.07 TCGA-AO-A03M-01 6 28195500 28195500 C T ZSCAN9 Silent p.L151L 0.14 TCGA-AO-A03M-01 6 29455213 29455213 G C MAS1L Missense_Mutation p.S156C 0.18 deleterious(0.05) benign(0.191) TCGA-AO-A03M-01 6 30231257 30231257 T C HCG17 Intron 0.07 TCGA-AO-A03M-01 6 30574587 30574587 G A PPP1R10 Silent p.V143V 0.12 TCGA-AO-A03M-01 6 30672142 30672142 G C MDC1 Silent p.V1606V 0.24 TCGA-AO-A03M-01 6 33608321 33608321 G C ITPR3 Missense_Mutation p.K50N 0.18 deleterious(0) possibly_damaging(0.809) TCGA-AO-A03M-01 6 34789433 34789433 C T UHRF1BP1 Silent p.F16F 0.15 TCGA-AO-A03M-01 6 34831948 34831948 G A UHRF1BP1 Missense_Mutation p.D1129N 0.12 deleterious(0.03) possibly_damaging(0.645) TCGA-AO-A03M-01 6 36275555 36275555 G C PNPLA1 3'UTR 0.14 TCGA-AO-A03M-01 6 4032971 4032971 G C PRPF4B Missense_Mutation p.R407T 0.13 tolerated(0.36) possibly_damaging(0.541) TCGA-AO-A03M-01 6 45917119 45917119 C T CLIC5 Splice_Site p.X217_splice 0.17 TCGA-AO-A03M-01 6 53519758 53519758 C G KLHL31 Missense_Mutation p.D105H 0.18 deleterious(0) probably_damaging(0.991) TCGA-AO-A03M-01 6 5368981 5368981 C G FARS2 Missense_Mutation p.Q60E 0.09 tolerated(0.47) benign(0.002) TCGA-AO-A03M-01 6 5404833 5404833 C T FARS2 Missense_Mutation p.S224F 0.10 deleterious(0.01) possibly_damaging(0.893) TCGA-AO-A03M-01 6 56468735 56468735 C G DST Intron 0.17 TCGA-AO-A03M-01 6 62442615 62442615 C G KHDRBS2 Missense_Mutation p.D289H 0.03 deleterious(0) possibly_damaging(0.819) TCGA-AO-A03M-01 6 73751697 73751697 C T KCNQ5 Silent p.I176I 0.10 TCGA-AO-A03M-01 6 73751706 73751706 C T KCNQ5 Silent p.I179I 0.11 TCGA-AO-A03M-01 6 74228875 74228875 C G EEF1A1 Missense_Mutation p.R134P 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.844) TCGA-AO-A03M-01 6 74354161 74354161 G C SLC17A5 Missense_Mutation p.S87C 0.08 deleterious(0) probably_damaging(0.928) TCGA-AO-A03M-01 6 75947696 75947696 A G COX7A2 Missense_Mutation p.Y100H 0.14 deleterious(0.03) probably_damaging(0.912) TCGA-AO-A03M-01 6 8041471 8041471 G C BLOC1S5 Missense_Mutation p.L76V 0.09 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 6 83891493 83891493 C G PGM3 Missense_Mutation p.G278A 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 6 90368526 90368526 C G MDN1 Missense_Mutation p.E4942Q 0.13 unknown(0) TCGA-AO-A03M-01 6 90604554 90604554 C T GJA10 Missense_Mutation p.L123F 0.12 tolerated(0.43) benign(0.04) TCGA-AO-A03M-01 6 97512544 97512544 C T KLHL32 Missense_Mutation p.A118V 0.20 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 6 99885230 99885230 C G USP45 Missense_Mutation p.V736L 0.12 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 7 107576031 107576031 G A LAMB1 Silent p.T1339T 0.10 TCGA-AO-A03M-01 7 108213604 108213604 C G DNAJB9 Missense_Mutation p.S160C 0.12 deleterious(0.02) possibly_damaging(0.789) TCGA-AO-A03M-01 7 120767165 120767165 C T CPED1 Nonsense_Mutation p.Q386* 0.11 TCGA-AO-A03M-01 7 12668762 12668762 G C SCIN Missense_Mutation p.D412H 0.10 deleterious(0.01) possibly_damaging(0.649) TCGA-AO-A03M-01 7 128451956 128451956 G C CCDC136 Missense_Mutation p.E711Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 7 129029010 129029010 G C AHCYL2 Missense_Mutation p.G197R 0.14 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 7 133622768 133622768 G C EXOC4 Missense_Mutation p.E718Q 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-AO-A03M-01 7 133682259 133682259 C G EXOC4 Missense_Mutation p.Q741E 0.11 tolerated(1) benign(0.003) TCGA-AO-A03M-01 7 134853570 134853570 C T C7orf49 Missense_Mutation p.M35I 0.06 deleterious(0) benign(0.027) TCGA-AO-A03M-01 7 138601626 138601626 G A KIAA1549 Missense_Mutation p.P916S 0.07 tolerated(0.53) benign(0.021) TCGA-AO-A03M-01 7 138758737 138758737 C T ZC3HAV1 Missense_Mutation p.M579I 0.08 deleterious(0.01) possibly_damaging(0.48) TCGA-AO-A03M-01 7 139258051 139258051 G A HIPK2 Silent p.F1073F 0.09 TCGA-AO-A03M-01 7 142460329 142460329 C T PRSS1 Nonsense_Mutation p.Q168* 0.07 TCGA-AO-A03M-01 7 142563760 142563760 C T EPHB6 Missense_Mutation p.S383L 0.12 deleterious(0.01) possibly_damaging(0.597) TCGA-AO-A03M-01 7 142568301 142568301 G A EPHB6 Silent p.L940L 0.12 TCGA-AO-A03M-01 7 143079735 143079735 C T ZYX Missense_Mutation p.S153L 0.05 tolerated(0.1) unknown(0) TCGA-AO-A03M-01 7 148963802 148963802 G A ZNF783 Missense_Mutation p.S134N 0.07 deleterious(0.02) possibly_damaging(0.551) TCGA-AO-A03M-01 7 149503891 149503891 C T SSPO RNA 0.06 TCGA-AO-A03M-01 7 150654493 150654493 G A KCNH2 Silent p.L338L 0.14 TCGA-AO-A03M-01 7 150714279 150714279 G T ATG9B Missense_Mutation p.F711L 0.19 deleterious(0) probably_damaging(0.994) TCGA-AO-A03M-01 7 150767098 150767098 G C SLC4A2 Missense_Mutation p.Q404H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A03M-01 7 151072942 151072942 C G NUB1 Silent p.L492L 0.09 TCGA-AO-A03M-01 7 151860810 151860810 G C KMT2C Silent p.V3284V 0.08 TCGA-AO-A03M-01 7 152345856 152345856 C T XRCC2 Silent p.R238R 0.06 TCGA-AO-A03M-01 7 156432196 156432196 C G C7orf13 3'UTR 0.04 TCGA-AO-A03M-01 7 157370731 157370731 A G PTPRN2 Silent p.N866N 0.10 TCGA-AO-A03M-01 7 25266495 25266495 G C NPVF Missense_Mutation p.Q97E 0.11 tolerated(1) benign(0) TCGA-AO-A03M-01 7 26236568 26236568 C G HNRNPA2B1 Missense_Mutation p.E124Q 0.11 deleterious(0) unknown(0) TCGA-AO-A03M-01 7 27140817 27140817 G A HOXA2 Missense_Mutation p.S220F 0.10 tolerated(0.27) benign(0.17) TCGA-AO-A03M-01 7 28996492 28996492 G A AC005013.5 5'Flank 0.18 TCGA-AO-A03M-01 7 31010784 31010784 C G GHRHR Missense_Mutation p.I139M 0.11 deleterious(0.03) possibly_damaging(0.691) TCGA-AO-A03M-01 7 33060930 33060930 C G NT5C3A Missense_Mutation p.D137H 0.13 deleterious(0) possibly_damaging(0.899) TCGA-AO-A03M-01 7 36194182 36194182 C T EEPD1 Silent p.V83V 0.07 TCGA-AO-A03M-01 7 36194661 36194661 C G EEPD1 Missense_Mutation p.S243C 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-AO-A03M-01 7 36278616 36278616 G C EEPD1 Missense_Mutation p.E301Q 0.10 deleterious(0.01) probably_damaging(0.918) TCGA-AO-A03M-01 7 36447421 36447421 C G ANLN Missense_Mutation p.P318A 0.10 tolerated(0.76) benign(0.012) TCGA-AO-A03M-01 7 37960252 37960252 G T EPDR1 5'UTR 0.14 TCGA-AO-A03M-01 7 38475929 38475929 G C AMPH Missense_Mutation p.F359L 0.13 tolerated(0.36) probably_damaging(0.995) TCGA-AO-A03M-01 7 38908751 38908751 C A VPS41 Missense_Mutation p.D55Y 0.12 deleterious(0.02) benign(0.305) TCGA-AO-A03M-01 7 40356401 40356401 C G SUGCT Missense_Mutation p.Q262E 0.11 tolerated(0.26) benign(0.006) TCGA-AO-A03M-01 7 48008873 48008873 C T HUS1 Missense_Mutation p.E195K 0.08 deleterious(0) possibly_damaging(0.698) TCGA-AO-A03M-01 7 4820902 4820902 G C AP5Z1 Missense_Mutation p.Q46H 0.17 tolerated(0.07) benign(0.152) TCGA-AO-A03M-01 7 48443387 48443387 C G ABCA13 Missense_Mutation p.S3994W 0.12 probably_damaging(0.999) TCGA-AO-A03M-01 7 48682917 48682917 C T ABCA13 Silent p.L4957L 0.08 TCGA-AO-A03M-01 7 4901040 4901040 G A PAPOLB Silent p.F133F 0.10 TCGA-AO-A03M-01 7 5363881 5363881 G A TNRC18 Missense_Mutation p.P2136S 0.19 possibly_damaging(0.641) TCGA-AO-A03M-01 7 57187528 57187528 G A ZNF479 3'UTR 0.10 TCGA-AO-A03M-01 7 6022514 6022514 C G PMS2 Missense_Mutation p.E705D 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 7 64166948 64166948 C G ZNF107 Nonsense_Mutation p.S89* 0.11 TCGA-AO-A03M-01 7 64452642 64452642 C T ERV3-1 Missense_Mutation p.E255K 0.13 tolerated(0.1) benign(0.155) TCGA-AO-A03M-01 7 65220800 65220800 G A SNORA22 3'Flank 0.11 TCGA-AO-A03M-01 7 65220808 65220808 G A SNORA22 3'Flank 0.10 TCGA-AO-A03M-01 7 72419381 72419381 G A POM121 3'UTR 0.08 TCGA-AO-A03M-01 7 72739508 72739508 C G TRIM50 Intron 0.07 TCGA-AO-A03M-01 7 72755332 72755332 G C FKBP6 Missense_Mutation p.E282Q 0.13 tolerated(0.68) benign(0.004) TCGA-AO-A03M-01 7 82545052 82545052 C T PCLO Missense_Mutation p.E4084K 0.37 unknown(0) TCGA-AO-A03M-01 7 87160672 87160672 C T ABCB1 Missense_Mutation p.E875K 0.28 deleterious(0.03) benign(0.034) TCGA-AO-A03M-01 7 94855303 94855303 G C PPP1R9A Missense_Mutation p.D663H 0.08 deleterious(0) probably_damaging(0.952) TCGA-AO-A03M-01 7 95045539 95045539 G A PON2 Intron 0.14 TCGA-AO-A03M-01 8 100123447 100123447 C T VPS13B Silent p.F234F 0.10 TCGA-AO-A03M-01 8 100182347 100182347 C T VPS13B Silent p.F763F 0.08 TCGA-AO-A03M-01 8 103284937 103284937 G A UBR5 Nonsense_Mutation p.R2265* 0.10 TCGA-AO-A03M-01 8 103317404 103317404 G C UBR5 Missense_Mutation p.I912M 0.07 deleterious(0.01) benign(0.054) TCGA-AO-A03M-01 8 103372327 103372327 G C UBR5 Missense_Mutation p.L120V 0.08 tolerated(0.53) possibly_damaging(0.867) TCGA-AO-A03M-01 8 103663899 103663899 C G KLF10 Missense_Mutation p.D221H 0.06 tolerated(0.12) benign(0.143) TCGA-AO-A03M-01 8 104340569 104340569 C G FZD6 Missense_Mutation p.S489C 0.10 deleterious(0.02) probably_damaging(0.982) TCGA-AO-A03M-01 8 108348398 108348398 C T ANGPT1 Silent p.L185L 0.09 TCGA-AO-A03M-01 8 110563122 110563122 G A EBAG9 Silent p.K23K 0.11 TCGA-AO-A03M-01 8 113363470 113363470 G A CSMD3 Missense_Mutation p.H2087Y 0.10 tolerated(0.07) possibly_damaging(0.745) TCGA-AO-A03M-01 8 116616177 116616177 G C TRPS1 Silent p.V673V 0.20 TCGA-AO-A03M-01 8 116631536 116631536 C T TRPS1 Silent p.L263L 0.20 TCGA-AO-A03M-01 8 117661054 117661054 C T EIF3H Silent p.Q273Q 0.09 TCGA-AO-A03M-01 8 118811984 118811984 C T EXT1 Silent p.L736L 0.17 TCGA-AO-A03M-01 8 119209944 119209944 C T SAMD12 3'UTR 0.23 TCGA-AO-A03M-01 8 120577110 120577110 G C ENPP2 Missense_Mutation p.F791L 0.08 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 8 121408334 121408334 C G MRPL13 3'UTR 0.08 TCGA-AO-A03M-01 8 121535616 121535616 G C MTBP 3'UTR 0.07 TCGA-AO-A03M-01 8 124138797 124138797 G C TBC1D31 Missense_Mutation p.R585T 0.13 deleterious(0) possibly_damaging(0.81) TCGA-AO-A03M-01 8 124195425 124195425 C T FAM83A Missense_Mutation p.S110L 0.24 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 8 133837548 133837548 G C PHF20L1 Missense_Mutation p.R559T 0.18 tolerated(0.13) benign(0.031) TCGA-AO-A03M-01 8 134271459 134271459 G T NDRG1 Missense_Mutation p.S114Y 0.15 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 8 135615158 135615158 G C ZFAT Silent p.L268L 0.07 TCGA-AO-A03M-01 8 136470169 136470169 C T KHDRBS3 Silent p.F20F 0.27 TCGA-AO-A03M-01 8 143747381 143747381 C G JRK RNA 0.10 TCGA-AO-A03M-01 8 143958176 143958176 G A CYP11B1 Missense_Mutation p.P241S 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-AO-A03M-01 8 144903764 144903764 C G PUF60 Intron 0.13 TCGA-AO-A03M-01 8 145151386 145151386 C T CYC1 Silent p.I200I 0.11 TCGA-AO-A03M-01 8 146156836 146156836 G C ZNF16 Missense_Mutation p.S446C 0.11 deleterious(0) benign(0.432) TCGA-AO-A03M-01 8 17808216 17808216 C G PCM1 Missense_Mutation p.Q352E 0.13 tolerated(0.14) possibly_damaging(0.547) TCGA-AO-A03M-01 8 18729541 18729541 C G PSD3 Missense_Mutation p.R278T 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.448) TCGA-AO-A03M-01 8 20005543 20005543 G A SLC18A1 Silent p.P395P 0.08 TCGA-AO-A03M-01 8 2071151 2071151 T A MYOM2 Silent p.V1160V 0.10 TCGA-AO-A03M-01 8 22458455 22458455 G A C8orf58 Missense_Mutation p.R34K 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-AO-A03M-01 8 22974629 22974629 C G TNFRSF10C 3'UTR 0.15 TCGA-AO-A03M-01 8 24323268 24323268 C A ADAM7 Silent p.I123I 0.14 TCGA-AO-A03M-01 8 26237796 26237796 G C BNIP3L 5'Flank 0.10 TCGA-AO-A03M-01 8 28574993 28574993 C G EXTL3 Missense_Mutation p.Q473E 0.08 tolerated(1) benign(0.004) TCGA-AO-A03M-01 8 28991565 28991565 G C KIF13B Missense_Mutation p.H926D 0.16 deleterious(0.04) possibly_damaging(0.755) TCGA-AO-A03M-01 8 30705231 30705231 C T TEX15 Missense_Mutation p.E435K 0.12 tolerated(0.06) possibly_damaging(0.691) TCGA-AO-A03M-01 8 3224653 3224653 G A CSMD1 Missense_Mutation p.H1006Y 0.06 benign(0.391) TCGA-AO-A03M-01 8 3253803 3253803 A T CSMD1 Missense_Mutation p.F836I 0.21 probably_damaging(0.999) TCGA-AO-A03M-01 8 37732380 37732380 C G RAB11FIP1 Missense_Mutation p.E425D 0.18 tolerated(0.26) benign(0.122) TCGA-AO-A03M-01 8 37996376 37996376 G A ASH2L Missense_Mutation p.D588N 0.11 tolerated(0.11) benign(0.013) TCGA-AO-A03M-01 8 38133845 38133845 G C WHSC1L1 Silent p.L1347L 0.09 TCGA-AO-A03M-01 8 38178611 38178611 C G WHSC1L1 Missense_Mutation p.K596N 0.06 tolerated(0.09) probably_damaging(0.999) TCGA-AO-A03M-01 8 43054540 43054540 C G HGSNAT Missense_Mutation p.S579C 0.11 deleterious(0) probably_damaging(0.95) TCGA-AO-A03M-01 8 55541131 55541131 G C RP1 Missense_Mutation p.M1563I 0.10 tolerated(0.25) benign(0.026) TCGA-AO-A03M-01 8 57079234 57079234 C G PLAG1 Missense_Mutation p.E357D 0.13 tolerated(0.22) possibly_damaging(0.899) TCGA-AO-A03M-01 8 61736630 61736630 G C CHD7 Intron 0.20 TCGA-AO-A03M-01 8 67789746 67789746 C G MCMDC2 Missense_Mutation p.L150V 0.17 tolerated(0.09) probably_damaging(0.996) TCGA-AO-A03M-01 8 68346360 68346360 C A CPA6 Missense_Mutation p.R318S 0.05 deleterious(0) benign(0.021) TCGA-AO-A03M-01 8 73850312 73850312 G A KCNB2 Missense_Mutation p.E908K 0.11 deleterious_low_confidence(0.01) benign(0.188) TCGA-AO-A03M-01 8 81553616 81553616 C G ZNF704 Missense_Mutation p.Q408H 0.20 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 8 86242044 86242044 G C CA1 Missense_Mutation p.D181E 0.11 deleterious(0.03) possibly_damaging(0.883) TCGA-AO-A03M-01 8 91637891 91637891 C T TMEM64 3'UTR 0.07 TCGA-AO-A03M-01 8 92008895 92008895 C G TMEM55A Missense_Mutation p.G206A 0.10 tolerated(0.79) probably_damaging(0.997) TCGA-AO-A03M-01 8 95518781 95518781 G A KIAA1429 Silent p.V1348V 0.11 TCGA-AO-A03M-01 9 104133443 104133443 G A BAAT Silent p.L82L 0.19 TCGA-AO-A03M-01 9 104335427 104335427 G A GRIN3A 3'UTR 0.12 TCGA-AO-A03M-01 9 106877035 106877035 G C SMC2 Silent p.V532V 0.20 TCGA-AO-A03M-01 9 107289308 107289308 G A OR13C4 Silent p.F61F 0.12 TCGA-AO-A03M-01 9 112899931 112899931 G C PALM2-AKAP2 Missense_Mutation p.D703H 0.15 deleterious(0) probably_damaging(0.997) TCGA-AO-A03M-01 9 113547901 113547901 C T MUSK Silent p.L561L 0.12 TCGA-AO-A03M-01 9 114694589 114694589 C G UGCG Missense_Mutation p.H322D 0.04 deleterious(0) probably_damaging(0.98) TCGA-AO-A03M-01 9 116094210 116094210 G C WDR31 Silent p.L31L 0.10 TCGA-AO-A03M-01 9 116094211 116094211 A G WDR31 Missense_Mutation p.L31P 0.10 deleterious(0.01) possibly_damaging(0.629) TCGA-AO-A03M-01 9 116171214 116171214 C T POLE3 Silent p.K107K 0.13 TCGA-AO-A03M-01 9 119626003 119626003 C T ASTN2 Silent p.A582A 0.28 TCGA-AO-A03M-01 9 123620360 123620360 G C PHF19 Silent p.L535L 0.12 TCGA-AO-A03M-01 9 123631514 123631514 G C PHF19 Missense_Mutation p.S187W 0.16 deleterious(0) probably_damaging(0.964) TCGA-AO-A03M-01 9 123875860 123875860 G C CNTRL Missense_Mutation p.E401D 0.11 benign(0.048) TCGA-AO-A03M-01 9 125273830 125273830 C T OR1J2 Silent p.L250L 0.14 TCGA-AO-A03M-01 9 130206951 130206951 G C ZNF79 Missense_Mutation p.Q324H 0.24 tolerated(0.25) probably_damaging(0.998) TCGA-AO-A03M-01 9 130577980 130577980 G A ENG Missense_Mutation p.S653F 0.12 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 9 131236003 131236003 G T ODF2 Nonsense_Mutation p.E276* 0.11 TCGA-AO-A03M-01 9 131250224 131250224 G A ODF2 Missense_Mutation p.D486N 0.11 tolerated(0.15) benign(0.009) TCGA-AO-A03M-01 9 135202958 135202958 G A SETX Silent p.L1343L 0.10 TCGA-AO-A03M-01 9 136263151 136263151 G C C9orf96 Missense_Mutation p.K350N 0.12 tolerated(0.24) benign(0.003) TCGA-AO-A03M-01 9 139232342 139232342 G A GPSM1 Missense_Mutation p.E248K 0.29 deleterious(0) probably_damaging(0.995) TCGA-AO-A03M-01 9 139755175 139755175 G A MAMDC4 3'UTR 0.20 TCGA-AO-A03M-01 9 140477500 140477500 C G ZMYND19 Missense_Mutation p.E159Q 0.13 deleterious(0.02) possibly_damaging(0.544) TCGA-AO-A03M-01 9 19346788 19346788 G A DENND4C Missense_Mutation p.E1292K 0.11 tolerated(0.18) benign(0.015) TCGA-AO-A03M-01 9 27056360 27056360 C G IFT74 Nonsense_Mutation p.S509* 0.06 TCGA-AO-A03M-01 9 27948932 27948932 C G LINGO2 Missense_Mutation p.E580Q 0.21 tolerated(0.08) benign(0.311) TCGA-AO-A03M-01 9 2804340 2804340 C G KIAA0020 Silent p.L646L 0.10 TCGA-AO-A03M-01 9 33265060 33265060 C T CHMP5 5'UTR 0.13 TCGA-AO-A03M-01 9 34241549 34241549 G A UBAP1 Missense_Mutation p.E240K 0.12 deleterious(0) possibly_damaging(0.648) TCGA-AO-A03M-01 9 36191042 36191042 C T CLTA 5'UTR 0.11 TCGA-AO-A03M-01 9 39103750 39103750 C G CNTNAP3 Missense_Mutation p.E843Q 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-AO-A03M-01 9 4718472 4718472 G C AK3 Missense_Mutation p.I170M 0.12 tolerated(0.21) benign(0.001) TCGA-AO-A03M-01 9 5763265 5763265 G A KIAA1432 Missense_Mutation p.M746I 0.10 deleterious(0.01) possibly_damaging(0.479) TCGA-AO-A03M-01 9 78790033 78790033 G C PCSK5 Missense_Mutation p.E630Q 0.17 tolerated(0.07) possibly_damaging(0.821) TCGA-AO-A03M-01 9 79002433 79002433 G A RFK Missense_Mutation p.S117L 0.12 deleterious(0.04) benign(0.043) TCGA-AO-A03M-01 9 79324570 79324570 C T PRUNE2 Missense_Mutation p.D874N 0.12 tolerated(0.2) benign(0.009) TCGA-AO-A03M-01 9 80430609 80430609 C G GNAQ Missense_Mutation p.K133N 0.10 deleterious(0.01) benign(0.057) TCGA-AO-A03M-01 9 88162079 88162079 G A AGTPBP1 Missense_Mutation p.S1169F 0.21 tolerated_low_confidence(0.07) benign(0.015) TCGA-AO-A03M-01 9 90345976 90345976 G A CTSL Missense_Mutation p.R319K 0.14 tolerated(0.2) benign(0) TCGA-AO-A03M-01 9 94486102 94486102 C G ROR2 Missense_Mutation p.E892Q 0.11 deleterious_low_confidence(0.01) benign(0.424) TCGA-AO-A03M-01 9 94871025 94871025 G A SPTLC1 Missense_Mutation p.S86L 0.13 deleterious(0.01) benign(0.157) TCGA-AO-A03M-01 9 95050514 95050514 C T IARS Missense_Mutation p.G57E 0.16 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 X 100382503 100382503 C T CENPI Missense_Mutation p.S308L 0.12 tolerated(0.4) benign(0.063) TCGA-AO-A03M-01 X 100403010 100403010 T C CENPI Missense_Mutation p.W652R 0.15 deleterious(0) probably_damaging(0.998) TCGA-AO-A03M-01 X 102004803 102004803 G A BHLHB9 Missense_Mutation p.E294K 0.12 tolerated(0.09) benign(0.026) TCGA-AO-A03M-01 X 103420342 103420342 C T FAM199X Missense_Mutation p.S79L 0.16 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AO-A03M-01 X 107976538 107976538 C G IRS4 Missense_Mutation p.E1013Q 0.19 deleterious(0.01) unknown(0) TCGA-AO-A03M-01 X 109696097 109696097 C T RGAG1 Missense_Mutation p.S751F 0.14 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 X 114414104 114414104 G C LRCH2 Silent p.V250V 0.08 TCGA-AO-A03M-01 X 114864152 114864152 G C PLS3 Missense_Mutation p.E125Q 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-AO-A03M-01 X 117527075 117527075 G C WDR44 Missense_Mutation p.D223H 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AO-A03M-01 X 123480597 123480597 G A SH2D1A Silent p.E35E 0.15 TCGA-AO-A03M-01 X 128723901 128723901 C T OCRL Missense_Mutation p.S850F 0.15 deleterious(0) possibly_damaging(0.904) TCGA-AO-A03M-01 X 12905314 12905314 G C TLR7 Missense_Mutation p.E563Q 0.09 tolerated(1) benign(0.023) TCGA-AO-A03M-01 X 135431750 135431750 G A GPR112 Missense_Mutation p.R1962K 0.11 tolerated(0.16) benign(0.185) TCGA-AO-A03M-01 X 14548027 14548027 C G GLRA2 5'UTR 0.23 TCGA-AO-A03M-01 X 148062291 148062291 G C AFF2 Missense_Mutation p.Q1198H 0.17 deleterious(0.01) benign(0.009) TCGA-AO-A03M-01 X 148564415 148564415 G A IDS Silent p.F294F 0.11 TCGA-AO-A03M-01 X 150789405 150789405 G A PASD1 Missense_Mutation p.E71K 0.18 deleterious(0.04) benign(0.31) TCGA-AO-A03M-01 X 152159224 152159224 C G PNMA5 Missense_Mutation p.E307Q 0.19 tolerated(0.14) benign(0.033) TCGA-AO-A03M-01 X 153170474 153170474 C G AVPR2 5'UTR 0.18 TCGA-AO-A03M-01 X 153176593 153176593 G C ARHGAP4 Missense_Mutation p.I571M 0.18 deleterious(0) probably_damaging(1) TCGA-AO-A03M-01 X 153458985 153458985 C T OPN1MW Silent p.F277F 0.06 TCGA-AO-A03M-01 X 153940944 153940944 G C GAB3 Nonsense_Mutation p.S210* 0.21 TCGA-AO-A03M-01 X 154176036 154176036 C A F8 Nonsense_Mutation p.E684* 0.09 TCGA-AO-A03M-01 X 154528132 154528132 C G CLIC2 Missense_Mutation p.E87Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-AO-A03M-01 X 1551179 1551179 G A ASMTL Silent p.V164V 0.17 TCGA-AO-A03M-01 X 1585257 1585257 C G P2RY8 Silent p.L65L 0.12 TCGA-AO-A03M-01 X 18911535 18911535 G C PHKA2 3'UTR 0.38 TCGA-AO-A03M-01 X 18954230 18954230 G A PHKA2 Silent p.I360I 0.09 TCGA-AO-A03M-01 X 24024795 24024795 C A KLHL15 Nonsense_Mutation p.E6* 0.15 TCGA-AO-A03M-01 X 36162863 36162863 C T CHDC2 Silent p.V482V 0.16 TCGA-AO-A03M-01 X 38146233 38146233 C G RPGR Missense_Mutation p.E673D 0.31 benign(0) TCGA-AO-A03M-01 X 40560457 40560457 C G MED14 Missense_Mutation p.D484H 0.11 deleterious(0.04) benign(0.034) TCGA-AO-A03M-01 X 46510748 46510748 C A SLC9A7 Intron 0.13 TCGA-AO-A03M-01 X 47308438 47308438 T C ZNF41 Missense_Mutation p.E244G 0.11 tolerated(0.26) benign(0.016) TCGA-AO-A03M-01 X 53459270 53459270 G A HSD17B10 Silent p.I94I 0.19 TCGA-AO-A03M-01 X 65247917 65247917 A G VSIG4 Silent p.P244P 0.14 TCGA-AO-A03M-01 X 69177016 69177016 G A EDA Intron 0.11 TCGA-AO-A03M-01 X 70793552 70793552 G C OGT Missense_Mutation p.E1017Q 0.11 deleterious(0) probably_damaging(0.915) TCGA-AO-A03M-01 X 71428542 71428542 C T ERCC6L Silent p.V25V 0.12 TCGA-AO-A03M-01 X 73812681 73812681 C G RLIM Missense_Mutation p.E157Q 0.16 tolerated(0.52) unknown(0) TCGA-AO-A03M-01 X 75392892 75392892 G A PBDC1 5'UTR 0.23 TCGA-AO-A03M-01 X 75649826 75649826 C T MAGEE1 Silent p.F501F 0.10 TCGA-AO-A03M-01 X 82764478 82764478 C T POU3F4 3'UTR 0.26 TCGA-AO-A03M-01 X 99931013 99931013 G A SYTL4 3'UTR 0.16 TCGA-AO-A03N-01 10 106014943 106014943 C T GSTO1 Silent p.V19V 0.53 TCGA-AO-A03N-01 10 1118202 1118202 C T WDR37 Missense_Mutation p.T36M 0.62 tolerated(0.13) probably_damaging(0.985) TCGA-AO-A03N-01 10 124189392 124189392 C T PLEKHA1 Nonsense_Mutation p.Q385* 0.07 TCGA-AO-A03N-01 10 69571224 69571224 C G DNAJC12 Intron 0.28 TCGA-AO-A03N-01 11 126136666 126136666 C A SRPR Missense_Mutation p.E226D 0.49 tolerated(0.37) benign(0.003) TCGA-AO-A03N-01 11 128332356 128332356 C T ETS1 Missense_Mutation p.R453H 0.20 deleterious(0) probably_damaging(0.994) TCGA-AO-A03N-01 11 60183854 60183854 G C MS4A14 Missense_Mutation p.W504C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AO-A03N-01 11 6816144 6816144 G A OR6A2 Missense_Mutation p.R266W 0.23 deleterious(0.04) probably_damaging(1) TCGA-AO-A03N-01 11 76372514 76372514 G C LRRC32 Silent p.L41L 0.20 TCGA-AO-A03N-01 11 77930333 77930333 C G GAB2 Missense_Mutation p.K672N 0.43 deleterious(0.02) probably_damaging(0.974) TCGA-AO-A03N-01 12 11338818 11338818 G A TAS2R42 Silent p.L242L 0.18 TCGA-AO-A03N-01 12 120534969 120534969 G A RAB35 3'UTR 0.08 TCGA-AO-A03N-01 12 121757513 121757513 C G ANAPC5 Missense_Mutation p.E542Q 0.14 tolerated(0.09) probably_damaging(0.948) TCGA-AO-A03N-01 12 132636742 132636742 G T NOC4L Missense_Mutation p.E477D 0.23 tolerated(0.12) benign(0.142) TCGA-AO-A03N-01 12 15262253 15262253 C T RERG Missense_Mutation p.E131K 0.20 deleterious(0.02) possibly_damaging(0.536) TCGA-AO-A03N-01 12 27068941 27068941 C G ASUN Silent p.R414R 0.19 TCGA-AO-A03N-01 12 49315850 49315850 G A FKBP11 Missense_Mutation p.H175Y 0.14 tolerated(0.81) benign(0.03) TCGA-AO-A03N-01 12 52795130 52795130 G A KRT82 Silent p.Y208Y 0.16 TCGA-AO-A03N-01 12 52960595 52960595 C T KRT74 3'UTR 0.48 TCGA-AO-A03N-01 12 54974805 54974805 C T PPP1R1A Missense_Mutation p.E145K 0.19 tolerated(0.12) benign(0.056) TCGA-AO-A03N-01 13 31233476 31233476 C T USPL1 Silent p.L1088L 0.46 TCGA-AO-A03N-01 13 33638277 33638277 C G KL Missense_Mutation p.S998C 0.29 tolerated(0.2) possibly_damaging(0.625) TCGA-AO-A03N-01 13 38213174 38213174 T A TRPC4 Intron 0.32 TCGA-AO-A03N-01 13 95232200 95232200 A G TGDS Missense_Mutation p.V188A 0.30 tolerated(0.12) benign(0.02) TCGA-AO-A03N-01 14 22192335 22192335 C A TRAV3 Missense_Mutation p.P37H 0.27 tolerated(0.2) benign(0.047) TCGA-AO-A03N-01 14 31425361 31425361 C T STRN3 Missense_Mutation p.A124T 0.03 deleterious(0.03) probably_damaging(0.997) TCGA-AO-A03N-01 14 38724253 38724253 C G CLEC14A Missense_Mutation p.E325D 0.12 tolerated_low_confidence(0.1) benign(0.03) TCGA-AO-A03N-01 14 70634913 70634913 C A SLC8A3 Missense_Mutation p.R76M 0.62 deleterious(0) probably_damaging(0.996) TCGA-AO-A03N-01 14 94466008 94466008 G C LINC00521 RNA 0.24 TCGA-AO-A03N-01 15 24921902 24921902 G A NPAP1 Silent p.L296L 0.17 TCGA-AO-A03N-01 15 40498522 40498522 G A BUB1B Silent p.E624E 0.24 TCGA-AO-A03N-01 15 41062880 41062880 C T C15orf62 Missense_Mutation p.R63C 0.21 deleterious(0.01) possibly_damaging(0.897) TCGA-AO-A03N-01 15 48800793 48800793 C T FBN1 Missense_Mutation p.G608E 0.24 probably_damaging(0.987) TCGA-AO-A03N-01 15 66206079 66206079 G A MEGF11 Silent p.L902L 0.20 TCGA-AO-A03N-01 15 76726583 76726583 C G SCAPER Missense_Mutation p.L1049F 0.31 deleterious(0.04) benign(0.315) TCGA-AO-A03N-01 15 91035774 91035774 C T IQGAP1 Intron 0.23 TCGA-AO-A03N-01 16 1608111 1608111 C T IFT140 Missense_Mutation p.E742K 0.15 tolerated(0.8) benign(0.001) TCGA-AO-A03N-01 16 1884357 1884357 G A MEIOB Missense_Mutation p.S439L 0.04 deleterious(0.02) possibly_damaging(0.493) TCGA-AO-A03N-01 16 19126677 19126677 C T ITPRIPL2 Silent p.Y298Y 0.14 TCGA-AO-A03N-01 16 28374238 28374238 G C NPIPB6 5'UTR 0.18 TCGA-AO-A03N-01 16 28507365 28507365 G A APOBR Missense_Mutation p.E335K 0.27 deleterious(0.05) benign(0.016) TCGA-AO-A03N-01 16 30080931 30080931 C T ALDOA Missense_Mutation p.H300Y 0.34 tolerated(0.13) benign(0.001) TCGA-AO-A03N-01 16 30783268 30783268 G C RNF40 Missense_Mutation p.E901Q 0.16 deleterious(0.03) possibly_damaging(0.692) TCGA-AO-A03N-01 16 31123564 31123564 G T BCKDK Missense_Mutation p.R406L 0.41 deleterious(0.01) benign(0.063) TCGA-AO-A03N-01 16 31496154 31496154 C G SLC5A2 Silent p.L71L 0.12 TCGA-AO-A03N-01 16 46771693 46771693 G C MYLK3 Missense_Mutation p.Q311E 0.13 tolerated(1) benign(0.001) TCGA-AO-A03N-01 17 35736110 35736110 C T C17orf78 Nonsense_Mutation p.Q61* 0.29 TCGA-AO-A03N-01 17 35900635 35900635 C G SYNRG Missense_Mutation p.K1071N 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-AO-A03N-01 17 38907420 38907420 C T KRT25 Silent p.E276E 0.29 TCGA-AO-A03N-01 17 39340770 39340770 G A KRTAP4-1 Missense_Mutation p.R113C 0.53 deleterious(0.03) possibly_damaging(0.896) TCGA-AO-A03N-01 17 4711091 4711091 C T PLD2 Silent p.L8L 0.27 TCGA-AO-A03N-01 17 73564696 73564696 C T LLGL2 Silent p.H392H 0.31 TCGA-AO-A03N-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.69 deleterious(0) probably_damaging(1) TCGA-AO-A03N-01 19 3119281 3119281 C T GNA11 Silent p.L271L 0.17 TCGA-AO-A03N-01 19 3119287 3119287 C T GNA11 Silent p.L273L 0.17 TCGA-AO-A03N-01 19 39924348 39924348 G T RPS16 Silent p.I68I 0.17 TCGA-AO-A03N-01 19 40149097 40149097 C T LGALS16 Intron 0.24 TCGA-AO-A03N-01 19 48869187 48869187 G A SYNGR4 Missense_Mutation p.E30K 0.21 tolerated(0.07) benign(0.131) TCGA-AO-A03N-01 1 120484236 120484236 G C NOTCH2 Missense_Mutation p.S965C 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-AO-A03N-01 1 151666098 151666098 G A SNX27 3'UTR 0.33 TCGA-AO-A03N-01 1 152191378 152191378 A C HRNR Missense_Mutation p.H909Q 0.50 unknown(0) TCGA-AO-A03N-01 1 155018896 155018896 G C DCST1 Missense_Mutation p.D477H 0.16 deleterious(0) probably_damaging(1) TCGA-AO-A03N-01 1 200584610 200584610 G T KIF14 Missense_Mutation p.H414N 0.27 tolerated(0.11) possibly_damaging(0.53) TCGA-AO-A03N-01 1 21599264 21599264 C T ECE1 Missense_Mutation p.D141N 0.36 tolerated(0.14) possibly_damaging(0.76) TCGA-AO-A03N-01 1 233388221 233388221 C G PCNXL2 Missense_Mutation p.Q669H 0.35 tolerated(0.05) benign(0.006) TCGA-AO-A03N-01 1 235969927 235969927 G A LYST Missense_Mutation p.P837S 0.32 tolerated(0.19) benign(0.009) TCGA-AO-A03N-01 1 244681976 244681976 C G C1orf101 Missense_Mutation p.S171C 0.12 tolerated(0.17) benign(0.413) TCGA-AO-A03N-01 1 245861453 245861453 C T KIF26B Missense_Mutation p.S1957F 0.15 deleterious(0) unknown(0) TCGA-AO-A03N-01 1 6639317 6639317 C G TAS1R1 Silent p.L733L 0.32 TCGA-AO-A03N-01 20 30898419 30898419 C T KIF3B Missense_Mutation p.S280F 0.16 deleterious(0) probably_damaging(0.998) TCGA-AO-A03N-01 20 62191561 62191561 G A HELZ2 Silent p.I2540I 0.18 TCGA-AO-A03N-01 21 35467894 35467894 C G SLC5A3 Missense_Mutation p.L133V 0.19 deleterious(0) possibly_damaging(0.897) TCGA-AO-A03N-01 21 43967216 43967216 C T SLC37A1 Missense_Mutation p.P245L 0.23 deleterious(0) probably_damaging(0.951) TCGA-AO-A03N-01 22 40075816 40075816 C A CACNA1I Silent p.I1828I 0.17 TCGA-AO-A03N-01 2 107040417 107040417 C G RGPD3 Missense_Mutation p.E1336Q 0.22 deleterious(0.04) probably_damaging(0.964) TCGA-AO-A03N-01 2 125547707 125547707 T G CNTNAP5 Missense_Mutation p.F993C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AO-A03N-01 2 175311476 175311476 C T GPR155 Splice_Site p.X626_splice 0.13 TCGA-AO-A03N-01 2 201362529 201362529 G A KCTD18 Missense_Mutation p.S203L 0.08 deleterious(0.02) possibly_damaging(0.632) TCGA-AO-A03N-01 2 210560177 210560177 G C MAP2 Missense_Mutation p.E1095Q 0.27 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-AO-A03N-01 2 237233390 237233390 C A IQCA1 Missense_Mutation p.A804S 0.19 tolerated(0.23) benign(0.016) TCGA-AO-A03N-01 2 55252534 55252534 C A RTN4 Missense_Mutation p.A901S 0.17 tolerated(0.47) benign(0.027) TCGA-AO-A03N-01 2 69692925 69692925 G A AAK1 3'Flank 0.20 TCGA-AO-A03N-01 3 105586395 105586395 G T CBLB Missense_Mutation p.N9K 0.21 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-AO-A03N-01 3 148894046 148894046 G T CP Missense_Mutation p.Q1058K 0.22 tolerated(0.43) benign(0.001) TCGA-AO-A03N-01 3 15115823 15115823 G A ZFYVE20 Silent p.G607G 0.30 TCGA-AO-A03N-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.24 deleterious(0.04) probably_damaging(0.96) TCGA-AO-A03N-01 3 45636504 45636504 C T LIMD1 Missense_Mutation p.R45C 0.42 deleterious(0) probably_damaging(0.999) TCGA-AO-A03N-01 3 46007805 46007805 C G FYCO1 Silent p.L1007L 0.21 TCGA-AO-A03N-01 4 122853847 122853847 C T TRPC3 Missense_Mutation p.R189H 0.23 deleterious(0) probably_damaging(0.998) TCGA-AO-A03N-01 4 6114530 6114530 C T JAKMIP1 Silent p.T16T 0.40 TCGA-AO-A03N-01 5 131533908 131533908 G T P4HA2 Missense_Mutation p.F454L 0.22 tolerated(0.89) possibly_damaging(0.803) TCGA-AO-A03N-01 5 137476522 137476522 G A BRD8 Missense_Mutation p.R1163C 0.10 deleterious(0.01) possibly_damaging(0.663) TCGA-AO-A03N-01 5 40959673 40959673 G A C7 Missense_Mutation p.E538K 0.22 deleterious(0.03) possibly_damaging(0.824) TCGA-AO-A03N-01 6 12164532 12164532 G A HIVEP1 Silent p.L2665L 0.13 TCGA-AO-A03N-01 6 127898402 127898402 T A C6orf58 Missense_Mutation p.N24K 0.22 deleterious(0.03) possibly_damaging(0.701) TCGA-AO-A03N-01 6 130392142 130392142 C T L3MBTL3 Nonsense_Mutation p.R372* 0.12 TCGA-AO-A03N-01 6 151281482 151281482 G A MTHFD1L Missense_Mutation p.M625I 0.15 deleterious(0.02) probably_damaging(0.968) TCGA-AO-A03N-01 6 161507647 161507647 C G MAP3K4 Nonsense_Mutation p.S835* 0.19 TCGA-AO-A03N-01 6 27278174 27278174 C T POM121L2 Missense_Mutation p.M592I 0.19 tolerated(0.15) benign(0.082) TCGA-AO-A03N-01 6 28501994 28501994 G A GPX5 3'UTR 0.26 TCGA-AO-A03N-01 6 33258201 33258201 G A PFDN6 Silent p.K78K 0.19 TCGA-AO-A03N-01 6 36040654 36040654 C T MAPK14 Silent p.L104L 0.18 TCGA-AO-A03N-01 6 49754484 49754484 C T PGK2 Silent p.K139K 0.12 TCGA-AO-A03N-01 6 76744474 76744474 C T IMPG1 Missense_Mutation p.R111Q 0.23 deleterious(0.05) probably_damaging(0.957) TCGA-AO-A03N-01 6 83830462 83830462 C G DOPEY1 Missense_Mutation p.L351V 0.22 deleterious(0) probably_damaging(0.955) TCGA-AO-A03N-01 7 100352988 100352988 C G ZAN Missense_Mutation p.I1088M 0.17 unknown(0) TCGA-AO-A03N-01 7 103130322 103130322 C T RELN Silent p.Q3210Q 0.13 TCGA-AO-A03N-01 7 107626640 107626640 C T LAMB1 Missense_Mutation p.E198K 0.16 deleterious(0) probably_damaging(0.999) TCGA-AO-A03N-01 7 130147523 130147523 C G MEST 3'Flank 0.20 TCGA-AO-A03N-01 7 22533058 22533058 C T STEAP1B Missense_Mutation p.R161K 0.16 deleterious(0) probably_damaging(0.996) TCGA-AO-A03N-01 7 30538452 30538452 G C GGCT Nonsense_Mutation p.Y130* 0.22 TCGA-AO-A03N-01 7 38807156 38807156 C T VPS41 Missense_Mutation p.D410N 0.19 tolerated(0.21) benign(0.004) TCGA-AO-A03N-01 7 44228544 44228544 G A GCK Silent p.D3D 0.21 TCGA-AO-A03N-01 7 72717985 72717985 G T NSUN5 Missense_Mutation p.P328Q 0.69 tolerated(0.56) benign(0.012) TCGA-AO-A03N-01 7 77569710 77569710 C A PHTF2 Intron 0.20 TCGA-AO-A03N-01 7 87179586 87179586 C T ABCB1 Silent p.V417V 0.20 TCGA-AO-A03N-01 7 88424358 88424358 C G C7orf62 Intron 0.24 TCGA-AO-A03N-01 7 91743112 91743112 T C CYP51A1 Missense_Mutation p.K466R 0.39 tolerated(0.37) possibly_damaging(0.852) TCGA-AO-A03N-01 7 91743118 91743118 T G CYP51A1 Missense_Mutation p.Q464P 0.37 deleterious(0) probably_damaging(1) TCGA-AO-A03N-01 8 126194375 126194375 G C NSMCE2 Missense_Mutation p.D99H 0.17 deleterious(0.01) possibly_damaging(0.885) TCGA-AO-A03N-01 8 13072274 13072274 G T DLC1 Intron 0.28 TCGA-AO-A03N-01 8 143602279 143602279 G T BAI1 Missense_Mutation p.R1006L 0.22 tolerated(0.42) benign(0) TCGA-AO-A03N-01 8 144732634 144732634 C T ZNF623 Nonsense_Mutation p.Q198* 0.09 TCGA-AO-A03N-01 8 65527712 65527712 G A CYP7B1 Missense_Mutation p.R310W 0.20 tolerated(0.07) probably_damaging(0.976) TCGA-AO-A03N-01 8 87755859 87755859 C G CNGB3 5'UTR 0.23 TCGA-AO-A03N-01 9 113637855 113637855 C T LPAR1 Missense_Mutation p.R314H 0.21 deleterious(0.01) benign(0.386) TCGA-AO-A03N-01 9 34648780 34648780 G C GALT Missense_Mutation p.E237Q 0.35 tolerated(0.12) benign(0.256) TCGA-AO-A03N-01 9 79324907 79324907 C T PRUNE2 Silent p.L761L 0.32 TCGA-AO-A03N-01 X 129306147 129306147 C G RAB33A Missense_Mutation p.F37L 0.18 deleterious(0.01) probably_damaging(0.943) TCGA-AO-A03N-01 X 129518882 129518882 G C GPR119 Silent p.L180L 0.16 TCGA-AO-A03N-01 X 54275569 54275569 G A WNK3 Missense_Mutation p.P1071L 0.10 tolerated(0.06) benign(0.003) TCGA-AO-A03N-01 X 66931346 66931346 C G AR Nonsense_Mutation p.S663* 0.16 TCGA-AO-A03N-01 X 67414316 67414316 G A OPHN1 Nonsense_Mutation p.Q377* 0.64 TCGA-AO-A03N-01 X 8763333 8763333 G A FAM9A Missense_Mutation p.A206V 0.16 tolerated_low_confidence(0.08) unknown(0) TCGA-AO-A03U-01 12 49666386 49666386 G T TUBA1C Silent p.L242L 0.05 TCGA-AO-A03U-01 15 63448632 63448633 - TAC RPS27L In_Frame_Ins p.F32delinsCI 0.13 TCGA-AO-A03U-01 2 27803312 27803312 G C C2orf16 Missense_Mutation p.K1291N 0.22 deleterious(0) possibly_damaging(0.649) TCGA-AO-A03U-01 5 108698676 108698676 T C PJA2 Missense_Mutation p.N506S 0.10 tolerated(0.17) benign(0.006) TCGA-AO-A03U-01 5 89990148 89990149 TA - GPR98 Frame_Shift_Del p.I2526Sfs*3 0.18 TCGA-AO-A03U-01 8 133899093 133899093 A G TG Silent p.R492R 0.19 TCGA-AO-A03U-01 X 134494360 134494360 G A ZNF449 Missense_Mutation p.E306K 0.10 tolerated(0.38) benign(0.022) TCGA-AO-A03V-01 10 30317146 30317146 C T KIAA1462 Missense_Mutation p.R644K 0.27 tolerated(0.48) benign(0.058) TCGA-AO-A03V-01 10 69832868 69832868 T A HERC4 5'UTR 0.13 TCGA-AO-A03V-01 10 89514265 89514265 G A ATAD1 3'UTR 0.64 TCGA-AO-A03V-01 10 96802742 96802742 C A CYP2C8 Missense_Mutation p.V352L 0.60 tolerated(0.29) benign(0.011) TCGA-AO-A03V-01 11 55339821 55339821 C A OR4C16 Missense_Mutation p.T73N 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-AO-A03V-01 11 65365763 65365763 C G MAP3K11 Nonstop_Mutation p.*848Sext*119 0.67 TCGA-AO-A03V-01 12 20803395 20803395 G A PDE3A Missense_Mutation p.G929E 0.37 deleterious(0) possibly_damaging(0.673) TCGA-AO-A03V-01 12 53434150 53434150 G T EIF4B 3'UTR 0.33 TCGA-AO-A03V-01 12 81678036 81678036 G A PPFIA2 Missense_Mutation p.A991V 0.38 tolerated(0.07) benign(0.224) TCGA-AO-A03V-01 12 82147913 82147913 G T PPFIA2 Missense_Mutation p.H30N 0.40 tolerated(1) benign(0.003) TCGA-AO-A03V-01 13 52971733 52971733 G A THSD1 Silent p.L219L 0.11 TCGA-AO-A03V-01 14 105965350 105965350 C G C14orf80 3'UTR 0.67 TCGA-AO-A03V-01 15 34023837 34023837 C T RYR3 Missense_Mutation p.R2456C 0.33 benign(0.014) TCGA-AO-A03V-01 15 84373178 84373178 C T ADAMTSL3 Missense_Mutation p.P36L 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-AO-A03V-01 17 27959760 27959760 C G SSH2 Missense_Mutation p.E791Q 0.25 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-AO-A03V-01 17 45773639 45773639 G A TBKBP1 Missense_Mutation p.R54Q 0.64 deleterious(0) probably_damaging(0.987) TCGA-AO-A03V-01 17 72470679 72470679 T A CD300A Missense_Mutation p.S130T 0.56 tolerated(0.29) benign(0.173) TCGA-AO-A03V-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.75 deleterious(0) probably_damaging(1) TCGA-AO-A03V-01 18 61233851 61233851 A T SERPINB12 Missense_Mutation p.K275N 0.10 tolerated(0.77) benign(0.001) TCGA-AO-A03V-01 18 9211612 9211612 C T ANKRD12 Missense_Mutation p.T161M 0.35 deleterious(0) possibly_damaging(0.79) TCGA-AO-A03V-01 19 30199322 30199322 G A C19orf12 Missense_Mutation p.T11M 0.31 tolerated(0.08) benign(0.276) TCGA-AO-A03V-01 19 45418145 45418145 C T APOC1 5'UTR 0.55 TCGA-AO-A03V-01 19 49963044 49963044 C G ALDH16A1 Silent p.L146L 0.77 TCGA-AO-A03V-01 19 49963059 49963059 C T ALDH16A1 Silent p.I151I 0.85 TCGA-AO-A03V-01 19 49963072 49963072 C T ALDH16A1 Nonsense_Mutation p.Q156* 0.88 TCGA-AO-A03V-01 19 51754767 51754767 G A CTD-3187F8.2 RNA 0.07 TCGA-AO-A03V-01 19 55751018 55751018 C A PPP6R1 Missense_Mutation p.D533Y 0.06 deleterious(0) probably_damaging(0.997) TCGA-AO-A03V-01 19 56925731 56925731 C T ZNF583 Missense_Mutation p.P52S 0.29 deleterious(0.03) benign(0.042) TCGA-AO-A03V-01 1 11708857 11708857 G C FBXO2 Missense_Mutation p.P262R 0.28 deleterious(0.04) probably_damaging(1) TCGA-AO-A03V-01 1 1309283 1309283 C T AURKAIP1 Splice_Site p.X167_splice 0.26 TCGA-AO-A03V-01 1 150476814 150476814 G C TARS2 Missense_Mutation p.D541H 0.53 deleterious(0) probably_damaging(1) TCGA-AO-A03V-01 1 236738059 236738059 C A HEATR1 Nonsense_Mutation p.E1077* 0.29 TCGA-AO-A03V-01 1 244869027 244869027 C G DESI2 Missense_Mutation p.A174G 0.18 tolerated(0.33) benign(0.073) TCGA-AO-A03V-01 1 42047320 42047320 G A HIVEP3 Missense_Mutation p.S1050F 0.42 probably_damaging(0.998) TCGA-AO-A03V-01 1 89885865 89885865 A G GBP1P1 RNA 0.40 TCGA-AO-A03V-01 1 92161237 92161237 G T TGFBR3 Missense_Mutation p.S810Y 0.38 deleterious(0) probably_damaging(0.993) TCGA-AO-A03V-01 20 19701876 19701876 G A SLC24A3 3'UTR 0.15 TCGA-AO-A03V-01 22 24468359 24468359 C T CABIN1 Missense_Mutation p.S844L 0.62 deleterious(0) benign(0.253) TCGA-AO-A03V-01 22 25294156 25294156 C T SGSM1 Missense_Mutation p.T802M 0.18 tolerated(0.12) benign(0.06) TCGA-AO-A03V-01 22 38355468 38355468 G A POLR2F Missense_Mutation p.R69Q 0.38 deleterious(0) probably_damaging(1) TCGA-AO-A03V-01 2 179498336 179498336 C G TTN Missense_Mutation p.L14250F 0.35 TCGA-AO-A03V-01 2 20455818 20455818 G A PUM2 Silent p.F866F 0.31 TCGA-AO-A03V-01 2 233986963 233986963 C A INPP5D Missense_Mutation p.D115E 0.35 tolerated(0.62) benign(0.028) TCGA-AO-A03V-01 2 86707459 86707459 G A KDM3A Missense_Mutation p.S829N 0.31 tolerated(0.07) benign(0.388) TCGA-AO-A03V-01 3 10028422 10028422 C T EMC3 5'UTR 0.09 TCGA-AO-A03V-01 3 147106586 147106586 C T ZIC4 3'UTR 0.33 TCGA-AO-A03V-01 3 169524690 169524690 G T LRRC34 Silent p.L158L 0.33 TCGA-AO-A03V-01 3 49847551 49847551 T G UBA7 Missense_Mutation p.T567P 0.40 deleterious(0) benign(0.316) TCGA-AO-A03V-01 3 73432884 73432884 C T PDZRN3 Missense_Mutation p.E945K 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A03V-01 4 123109213 123109213 G T KIAA1109 Missense_Mutation p.S264I 0.70 probably_damaging(0.996) TCGA-AO-A03V-01 4 2513747 2513747 G C RNF4 Intron 0.07 TCGA-AO-A03V-01 4 46252301 46252301 C A GABRA2 3'UTR 0.48 TCGA-AO-A03V-01 4 55133820 55133820 C T PDGFRA Missense_Mutation p.P345S 0.05 deleterious(0.01) possibly_damaging(0.657) TCGA-AO-A03V-01 4 71840935 71840935 A G MOB1B Missense_Mutation p.Y119C 0.50 deleterious(0) probably_damaging(1) TCGA-AO-A03V-01 5 140581431 140581431 C A PCDHB11 Missense_Mutation p.A695D 0.19 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-AO-A03V-01 5 21817115 21817115 C T CDH12 Missense_Mutation p.G314E 0.17 tolerated(1) benign(0.07) TCGA-AO-A03V-01 5 39288989 39288989 A - C9 Frame_Shift_Del p.L494Wfs*14 0.13 TCGA-AO-A03V-01 5 42695133 42695133 C G GHR Missense_Mutation p.I127M 0.19 tolerated(0.39) probably_damaging(0.973) TCGA-AO-A03V-01 5 79378337 79378337 C G THBS4 Missense_Mutation p.I931M 0.05 deleterious(0) probably_damaging(0.999) TCGA-AO-A03V-01 6 146127358 146127358 T G FBXO30 Missense_Mutation p.N62H 0.38 deleterious(0) probably_damaging(1) TCGA-AO-A03V-01 6 160496980 160496980 C T IGF2R Silent p.F1756F 0.32 TCGA-AO-A03V-01 6 26199999 26199999 C T HIST1H2BF Silent p.F71F 0.10 TCGA-AO-A03V-01 7 114066679 114066679 G A FOXP2 Missense_Mutation p.G38D 0.12 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-AO-A03V-01 7 143633096 143633096 C G OR2F2 Missense_Mutation p.F257L 0.06 deleterious(0.03) benign(0.17) TCGA-AO-A03V-01 7 99701247 99701247 A G AP4M1 Missense_Mutation p.T159A 0.24 tolerated(0.07) possibly_damaging(0.763) TCGA-AO-A03V-01 8 12947852 12947852 C A DLC1 Missense_Mutation p.C1328F 0.23 tolerated(0.15) probably_damaging(0.974) TCGA-AO-A03V-01 8 95541412 95541412 C T KIAA1429 Missense_Mutation p.D256N 0.30 tolerated_low_confidence(0.22) possibly_damaging(0.782) TCGA-AO-A03V-01 9 114176803 114176803 C A KIAA0368 Silent p.G809G 0.36 TCGA-AO-A03V-01 9 13192136 13192136 T C MPDZ Silent p.T654T 0.59 TCGA-AO-A03V-01 9 87425517 87425517 G A NTRK2 Intron 0.08 TCGA-AO-A03V-01 X 1522340 1522340 T G ASMTL Missense_Mutation p.K563T 0.32 tolerated(0.1) possibly_damaging(0.725) TCGA-AO-A03V-01 X 19021075 19021075 C G GPR64 Missense_Mutation p.V707L 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-AO-A03V-01 X 47430771 47430771 G A ARAF Missense_Mutation p.R579Q 0.54 deleterious(0.02) benign(0.058) TCGA-AO-A0JG-01 10 8115930 8115931 - C GATA3 Frame_Shift_Ins p.S428Qfs*80 0.09 TCGA-AO-A0JG-01 11 32953798 32953798 G A QSER1 Missense_Mutation p.A203T 0.32 tolerated(0.11) benign(0.419) TCGA-AO-A0JG-01 11 78152164 78152164 C A NARS2 Splice_Site p.X421_splice 0.03 TCGA-AO-A0JG-01 14 57051723 57051723 A T TMEM260 Missense_Mutation p.E55D 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A0JG-01 16 81295772 81295772 G C BCMO1 Missense_Mutation p.D119H 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-AO-A0JG-01 17 26820713 26820713 C A SLC13A2 Missense_Mutation p.L384I 0.17 tolerated(0.2) benign(0.252) TCGA-AO-A0JG-01 17 46988234 46988234 A G UBE2Z Missense_Mutation p.M128V 0.12 tolerated(0.58) benign(0.042) TCGA-AO-A0JG-01 1 241755489 241755489 C A KMO 3'UTR 0.30 TCGA-AO-A0JG-01 1 40235514 40235514 C A OXCT2 Missense_Mutation p.V472L 0.19 deleterious(0) possibly_damaging(0.832) TCGA-AO-A0JG-01 1 70505003 70505003 T C LRRC7 Missense_Mutation p.F1128L 0.32 tolerated(0.18) benign(0.156) TCGA-AO-A0JG-01 20 56087795 56087795 G C CTCFL Silent p.R448R 0.27 TCGA-AO-A0JG-01 2 71303763 71303763 T C NAGK Missense_Mutation p.Y279H 0.21 tolerated(0.89) benign(0.005) TCGA-AO-A0JG-01 4 170628374 170628374 A T CLCN3 Missense_Mutation p.R702S 0.31 tolerated(0.34) probably_damaging(0.993) TCGA-AO-A0JG-01 5 67589230 67589230 C A PIK3R1 Missense_Mutation p.N406K 0.26 tolerated(0.08) possibly_damaging(0.893) TCGA-AO-A0JG-01 6 13659036 13659036 C G RANBP9 Missense_Mutation p.G238R 0.12 deleterious(0.04) possibly_damaging(0.624) TCGA-AO-A0JG-01 6 30853432 30853432 G A DDR1 5'UTR 0.17 TCGA-AO-A0JG-01 6 30853442 30853442 T G DDR1 5'UTR 0.16 TCGA-AO-A0JG-01 6 30853444 30853444 G A DDR1 5'UTR 0.15 TCGA-AO-A0JG-01 7 151948034 151948034 C T KMT2C Missense_Mutation p.E547K 0.27 possibly_damaging(0.574) TCGA-AO-A0JG-01 9 34179009 34179009 C A UBAP1 5'UTR 0.31 TCGA-AO-A0JG-01 X 120008768 120008768 C T CT47B1 Missense_Mutation p.E253K 0.10 deleterious(0.03) unknown(0) TCGA-AO-A0JG-01 X 135593259 135593259 G T HTATSF1 Missense_Mutation p.S452I 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.467) TCGA-AO-A124-01 10 102849619 102849620 - C TLX1NB Frame_Shift_Ins p.A15Gfs*49 0.74 TCGA-AO-A124-01 10 118434446 118434446 C T HSPA12A Missense_Mutation p.R625H 0.83 tolerated(0.61) benign(0.027) TCGA-AO-A124-01 10 134151186 134151186 A G LRRC27 Missense_Mutation p.I110V 0.52 deleterious(0.03) benign(0.042) TCGA-AO-A124-01 10 37419269 37419269 T A ANKRD30A Missense_Mutation p.L102Q 0.26 deleterious(0) probably_damaging(0.973) TCGA-AO-A124-01 10 37419270 37419270 G T ANKRD30A Silent p.L102L 0.28 TCGA-AO-A124-01 10 50022127 50022127 G C WDFY4 Missense_Mutation p.Q1780H 0.27 deleterious(0.02) benign(0.443) TCGA-AO-A124-01 10 50820397 50820397 C G SLC18A3 3'UTR 0.24 TCGA-AO-A124-01 10 85984799 85984799 C T LRIT2 Missense_Mutation p.R61K 0.83 deleterious(0.02) possibly_damaging(0.651) TCGA-AO-A124-01 11 100792303 100792303 C G ARHGAP42 Missense_Mutation p.Q189E 0.78 deleterious(0.01) probably_damaging(0.986) TCGA-AO-A124-01 11 119206393 119206393 C T RNF26 Silent p.F187F 0.90 TCGA-AO-A124-01 11 1268967 1268967 C A MUC5B Silent p.A3619A 0.19 TCGA-AO-A124-01 11 32624272 32624272 T C EIF3M 3'UTR 0.08 TCGA-AO-A124-01 11 32624324 32624324 A T EIF3M 3'UTR 0.05 TCGA-AO-A124-01 11 43283872 43283872 T C HNRNPKP3 RNA 0.13 TCGA-AO-A124-01 11 43581217 43581217 G A MIR670 RNA 0.22 TCGA-AO-A124-01 11 44228488 44228488 C A EXT2 Missense_Mutation p.D580E 0.19 deleterious(0) probably_damaging(0.998) TCGA-AO-A124-01 11 47470718 47470718 G A RAPSN 5'UTR 0.44 TCGA-AO-A124-01 11 58125977 58125977 T C OR5B17 Missense_Mutation p.E189G 0.68 deleterious_low_confidence(0.01) benign(0.026) TCGA-AO-A124-01 12 120565720 120565720 C T GCN1L1 Missense_Mutation p.R2650K 0.34 benign(0.376) TCGA-AO-A124-01 12 14996080 14996080 T C ART4 5'UTR 0.18 TCGA-AO-A124-01 12 19511185 19511185 A G PLEKHA5 Silent p.E1054E 0.37 TCGA-AO-A124-01 12 42853647 42853647 T G PRICKLE1 Missense_Mutation p.K820N 0.47 deleterious(0) possibly_damaging(0.611) TCGA-AO-A124-01 12 53042093 53042093 G A KRT2 Missense_Mutation p.T329I 0.42 deleterious(0) benign(0.381) TCGA-AO-A124-01 12 6309673 6309673 T A CD9 Missense_Mutation p.V3D 0.44 deleterious(0.04) possibly_damaging(0.713) TCGA-AO-A124-01 13 32972561 32972561 G C BRCA2 Missense_Mutation p.C3304S 0.85 tolerated(0.09) probably_damaging(0.926) TCGA-AO-A124-01 13 51826195 51826195 C T FAM124A Missense_Mutation p.P267L 0.73 deleterious(0.01) probably_damaging(1) TCGA-AO-A124-01 14 23874978 23874978 G A MYH6 Missense_Mutation p.T68M 0.46 deleterious(0.04) probably_damaging(0.964) TCGA-AO-A124-01 14 95918641 95918641 G A SYNE3 Missense_Mutation p.P406L 0.92 tolerated(0.08) benign(0.013) TCGA-AO-A124-01 15 101567954 101567954 G T LRRK1 Nonsense_Mutation p.E880* 0.16 TCGA-AO-A124-01 15 34034597 34034597 C G RYR3 Missense_Mutation p.I2617M 0.63 possibly_damaging(0.697) TCGA-AO-A124-01 15 34653631 34653631 C T LPCAT4 Silent p.T371T 0.16 TCGA-AO-A124-01 15 69708330 69708330 C T KIF23 Intron 0.67 TCGA-AO-A124-01 15 84639385 84639385 C A ADAMTSL3 Nonsense_Mutation p.C880* 0.26 TCGA-AO-A124-01 16 11773000 11773000 T C TXNDC11 3'UTR 0.08 TCGA-AO-A124-01 16 11990550 11990550 C A GSPT1 Missense_Mutation p.D177Y 0.10 deleterious(0) possibly_damaging(0.882) TCGA-AO-A124-01 16 34712303 34712303 A G RP11-80F22.9 RNA 0.73 TCGA-AO-A124-01 17 18232039 18232039 G T SHMT1 3'UTR 0.23 TCGA-AO-A124-01 17 37369302 37369302 G C STAC2 Missense_Mutation p.C359W 0.20 deleterious(0.01) benign(0.009) TCGA-AO-A124-01 17 38711515 38711515 G A CCR7 Nonsense_Mutation p.Q206* 0.26 TCGA-AO-A124-01 17 44415042 44415042 G T LRRC37A Missense_Mutation p.D1686Y 0.21 deleterious(0.01) benign(0.133) TCGA-AO-A124-01 17 58538075 58538075 G A APPBP2 Missense_Mutation p.A337V 0.35 deleterious(0.04) probably_damaging(0.965) TCGA-AO-A124-01 17 60087928 60087928 A T MED13 Missense_Mutation p.S650R 0.32 tolerated(0.1) benign(0.051) TCGA-AO-A124-01 17 65082989 65082989 G T HELZ Missense_Mutation p.P1817Q 0.32 deleterious_low_confidence(0) unknown(0) TCGA-AO-A124-01 17 72773466 72773466 G T TMEM104 5'UTR 0.28 TCGA-AO-A124-01 17 72998158 72998158 G A CDR2L Splice_Site p.X114_splice 0.31 TCGA-AO-A124-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.84 TCGA-AO-A124-01 17 78811786 78811786 A T RPTOR Missense_Mutation p.T401S 0.28 tolerated(0.1) benign(0.035) TCGA-AO-A124-01 17 79215043 79215043 G A C17orf89 3'UTR 0.50 TCGA-AO-A124-01 17 80442791 80442791 C T NARF Silent p.N312N 0.05 TCGA-AO-A124-01 18 19438538 19438538 C G MIB1 Missense_Mutation p.D937E 0.18 tolerated(0.43) benign(0.009) TCGA-AO-A124-01 18 23598139 23598154 ACTAAAGCCTTTTATA - SS18 3'UTR 0.11 TCGA-AO-A124-01 18 3094191 3094191 C G MYOM1 Missense_Mutation p.E1281Q 0.21 deleterious(0) benign(0.044) TCGA-AO-A124-01 18 46476311 46476311 C G SMAD7 Missense_Mutation p.V162L 0.32 tolerated(1) possibly_damaging(0.474) TCGA-AO-A124-01 18 50918216 50918216 G A DCC Missense_Mutation p.V883I 0.29 tolerated(0.12) benign(0.048) TCGA-AO-A124-01 18 5445173 5445173 A G EPB41L3 Missense_Mutation p.F151S 0.17 deleterious(0) probably_damaging(1) TCGA-AO-A124-01 19 33424405 33424435 TTTCCATTCCCTTAAGTTTTAACTGTAGTTC - CEP89 Frame_Shift_Del p.E270Kfs*39 0.21 TCGA-AO-A124-01 19 40383993 40383993 T A FCGBP Missense_Mutation p.N3206I 0.15 possibly_damaging(0.904) TCGA-AO-A124-01 19 4117473 4117473 C T MAP2K2 Missense_Mutation p.G83S 0.48 deleterious(0.02) probably_damaging(0.996) TCGA-AO-A124-01 19 48879377 48879377 A T SYNGR4 Silent p.R169R 0.90 TCGA-AO-A124-01 19 50309000 50309000 C G AP2A1 Missense_Mutation p.Q873E 0.78 tolerated(1) benign(0.219) TCGA-AO-A124-01 19 50805047 50805047 C A MYH14 Missense_Mutation p.R1867S 0.31 deleterious(0.01) possibly_damaging(0.807) TCGA-AO-A124-01 19 52034507 52034507 G T SIGLEC6 Silent p.R112R 0.94 TCGA-AO-A124-01 19 53959355 53959355 A T ZNF761 RNA 0.61 TCGA-AO-A124-01 19 53959652 53959652 G A ZNF761 RNA 0.24 TCGA-AO-A124-01 19 56485096 56485096 C G NLRP8 Missense_Mutation p.H871Q 0.90 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A124-01 19 7589918 7589918 C A MCOLN1 Missense_Mutation p.P35T 0.33 tolerated(0.42) benign(0.013) TCGA-AO-A124-01 19 9050021 9050021 G A MUC16 Missense_Mutation p.T10537M 0.90 benign(0.066) TCGA-AO-A124-01 19 9087467 9087467 G T MUC16 Missense_Mutation p.Q1450K 0.42 unknown(0) TCGA-AO-A124-01 1 104068843 104068843 G C RNPC3 Missense_Mutation p.G51R 0.33 deleterious(0) probably_damaging(0.995) TCGA-AO-A124-01 1 114483129 114483129 T G HIPK1 Missense_Mutation p.Y42D 0.87 deleterious(0.04) benign(0.162) TCGA-AO-A124-01 1 1426042 1426042 G A ATAD3B Silent p.V535V 0.84 TCGA-AO-A124-01 1 145558223 145558223 G A ANKRD35 Missense_Mutation p.D114N 0.14 tolerated(0.09) benign(0.155) TCGA-AO-A124-01 1 148004597 148004597 A T NBPF14 Missense_Mutation p.V912E 0.19 deleterious(0.01) benign(0.051) TCGA-AO-A124-01 1 154458425 154458425 G A SHE Missense_Mutation p.A432V 0.23 deleterious(0) probably_damaging(1) TCGA-AO-A124-01 1 158646004 158646004 C A SPTA1 Missense_Mutation p.D347Y 0.44 deleterious(0) probably_damaging(0.981) TCGA-AO-A124-01 1 158669493 158669493 G T OR6K2 Missense_Mutation p.P317Q 0.40 tolerated(0.42) benign(0.002) TCGA-AO-A124-01 1 158818988 158818988 G - MNDA Frame_Shift_Del p.A396Pfs*9 0.14 TCGA-AO-A124-01 1 169511128 169511128 G A F5 Missense_Mutation p.S1067L 0.39 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-AO-A124-01 1 173916616 173916616 C G RC3H1 Silent p.V876V 0.19 TCGA-AO-A124-01 1 211751857 211751857 G A SLC30A1 Missense_Mutation p.S33L 0.35 deleterious(0.03) benign(0.254) TCGA-AO-A124-01 1 225140371 225140371 G A DNAH14 Splice_Site 0.16 TCGA-AO-A124-01 1 235909818 235909828 TTTCGAGGACC - LYST Splice_Site p.X2594_splice 0.16 TCGA-AO-A124-01 1 237167706 237167706 A T MT1HL1 5'UTR 0.51 TCGA-AO-A124-01 1 237801707 237801707 G A RYR2 Silent p.V2281V 0.16 TCGA-AO-A124-01 1 243327823 243327823 T C CEP170 Missense_Mutation p.I1147V 0.51 deleterious(0.01) probably_damaging(0.992) TCGA-AO-A124-01 1 247836055 247836055 G T OR13G1 Missense_Mutation p.Q97K 0.18 deleterious(0) probably_damaging(0.98) TCGA-AO-A124-01 1 36298161 36298161 G A AGO4 Missense_Mutation p.D457N 0.42 tolerated(0.42) benign(0.001) TCGA-AO-A124-01 1 36940986 36940986 C G CSF3R Missense_Mutation p.R118P 0.46 deleterious(0.02) probably_damaging(0.926) TCGA-AO-A124-01 1 57537166 57537193 CCAGCGCAAGGATAAATTCACAGGTATA - DAB1 Splice_Site p.X186_splice 0.51 TCGA-AO-A124-01 1 66036458 66036458 G A LEPR Missense_Mutation p.V115I 0.14 tolerated(0.75) benign(0.011) TCGA-AO-A124-01 1 70460297 70460297 C A LRRC7 Missense_Mutation p.L291I 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-AO-A124-01 1 95330335 95330335 G C SLC44A3 Silent p.S425S 0.39 TCGA-AO-A124-01 20 13698067 13698067 T G ESF1 Missense_Mutation p.K737T 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-AO-A124-01 20 29891013 29891013 A T DEFB116 3'Flank 0.39 TCGA-AO-A124-01 20 42343796 42343796 C A MYBL2 Missense_Mutation p.S616Y 0.73 deleterious(0) possibly_damaging(0.823) TCGA-AO-A124-01 20 60705737 60705737 G T LSM14B Silent p.L275L 0.25 TCGA-AO-A124-01 22 18220856 18220856 C T BID Missense_Mutation p.R214H 0.83 tolerated(0.26) benign(0.314) TCGA-AO-A124-01 22 29025722 29025722 G T TTC28 Missense_Mutation p.Q67K 0.41 tolerated(0.3) benign(0.183) TCGA-AO-A124-01 22 29737711 29737711 G A AP1B1 Silent p.I525I 0.92 TCGA-AO-A124-01 2 10186383 10186383 C G KLF11 Missense_Mutation p.A50G 0.38 deleterious(0) possibly_damaging(0.82) TCGA-AO-A124-01 2 10281993 10281993 C G C2orf48 5'UTR 0.41 TCGA-AO-A124-01 2 103321040 103321040 C G SLC9A2 Missense_Mutation p.T628R 0.17 tolerated(0.1) benign(0.265) TCGA-AO-A124-01 2 112873740 112873740 T C TMEM87B 3'UTR 0.17 TCGA-AO-A124-01 2 135744731 135744731 T G MAP3K19 Missense_Mutation p.T571P 0.36 tolerated(0.07) benign(0.007) TCGA-AO-A124-01 2 208993146 208993146 C A CRYGC Missense_Mutation p.M102I 1.00 deleterious(0.03) benign(0.011) TCGA-AO-A124-01 2 208993166 208993166 C A CRYGC Nonsense_Mutation p.E96* 1.00 TCGA-AO-A124-01 2 208994408 208994408 C G CRYGC Splice_Site p.X4_splice 0.71 TCGA-AO-A124-01 2 208994511 208994511 C T CRYGC Silent p.G2G 0.80 TCGA-AO-A124-01 2 21235092 21235092 G T APOB Missense_Mutation p.L1550M 0.47 probably_damaging(0.997) TCGA-AO-A124-01 2 33810192 33810192 C G FAM98A Missense_Mutation p.G403A 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-AO-A124-01 2 37873833 37873833 T A CDC42EP3 5'UTR 0.29 TCGA-AO-A124-01 2 39963718 39963718 C G THUMPD2 3'UTR 0.25 TCGA-AO-A124-01 2 39963762 39963762 G A THUMPD2 3'UTR 0.19 TCGA-AO-A124-01 2 54859818 54859818 C G SPTBN1 Missense_Mutation p.A1227G 0.85 tolerated(0.9) benign(0.002) TCGA-AO-A124-01 2 80529665 80529665 T A LRRTM1 Missense_Mutation p.K427M 0.33 deleterious(0) probably_damaging(0.994) TCGA-AO-A124-01 2 89072487 89072487 C A ANKRD36BP2 Intron 0.23 TCGA-AO-A124-01 2 89072488 89072488 A G ANKRD36BP2 Splice_Site 0.22 TCGA-AO-A124-01 2 99261888 99261888 T G MGAT4A Intron 0.18 TCGA-AO-A124-01 3 10322398 10322398 G A TATDN2 3'UTR 0.10 TCGA-AO-A124-01 3 131300432 131300432 A T CPNE4 Missense_Mutation p.N286K 0.29 tolerated(1) benign(0.129) TCGA-AO-A124-01 3 158431599 158431600 - T RARRES1 Frame_Shift_Ins p.R109Qfs*12 0.22 TCGA-AO-A124-01 3 159997110 159997110 A C IFT80 Missense_Mutation p.N569K 0.10 deleterious(0.05) benign(0.069) TCGA-AO-A124-01 3 167023671 167023671 T A ZBBX Missense_Mutation p.K495N 0.16 tolerated(0.07) benign(0.077) TCGA-AO-A124-01 3 180327358 180327358 C G TTC14 Intron 0.19 TCGA-AO-A124-01 3 186272045 186272045 T G TBCCD1 Silent p.T514T 0.20 TCGA-AO-A124-01 3 33612182 33612182 C T CLASP2 Intron 0.79 TCGA-AO-A124-01 3 38080927 38080927 C G DLEC1 Missense_Mutation p.L71V 0.48 tolerated_low_confidence(0.08) benign(0.031) TCGA-AO-A124-01 3 49456564 49456575 CCCCGCTACCGG - AMT In_Frame_Del p.P236_G239del 0.81 TCGA-AO-A124-01 3 54905585 54905585 G T CACNA2D3 Missense_Mutation p.R549L 0.39 tolerated(0.17) probably_damaging(0.999) TCGA-AO-A124-01 3 78737828 78737828 T A ROBO1 Silent p.P380P 0.80 TCGA-AO-A124-01 4 177036997 177036998 - A WDR17 Frame_Shift_Ins p.T85Nfs*11 0.23 TCGA-AO-A124-01 4 87809333 87809333 C T C4orf36 Missense_Mutation p.G54D 0.73 tolerated(0.46) benign(0.064) TCGA-AO-A124-01 5 118573104 118573104 T C DMXL1 Missense_Mutation p.Y2831H 0.86 deleterious(0) probably_damaging(0.934) TCGA-AO-A124-01 5 149425158 149425158 G C HMGXB3 Missense_Mutation p.V954L 0.90 deleterious(0.01) benign(0.411) TCGA-AO-A124-01 5 176778492 176778492 G A LMAN2 Missense_Mutation p.H53Y 0.50 tolerated(1) benign(0.005) TCGA-AO-A124-01 5 177422975 177422975 G C PROP1 5'UTR 0.60 TCGA-AO-A124-01 5 180661772 180661772 T C TRIM41 Silent p.P630P 0.48 TCGA-AO-A124-01 5 35068958 35068973 GGTTGTATCATTCATG - PRLR Frame_Shift_Del p.M232Cfs*14 0.15 TCGA-AO-A124-01 5 37008133 37008134 - T NIPBL Frame_Shift_Ins p.V1424Cfs*6 0.36 TCGA-AO-A124-01 5 79030062 79030062 A - CMYA5 Frame_Shift_Del p.A1827Hfs*13 0.25 TCGA-AO-A124-01 6 109766449 109766449 C G MICAL1 Missense_Mutation p.E944D 0.18 tolerated(0.35) benign(0.032) TCGA-AO-A124-01 6 119501033 119501033 A G MAN1A1 Missense_Mutation p.L638P 0.22 deleterious(0) probably_damaging(0.986) TCGA-AO-A124-01 6 146755828 146755828 G T GRM1 Missense_Mutation p.V1161L 0.24 tolerated_low_confidence(0.29) benign(0.006) TCGA-AO-A124-01 6 152546921 152546921 C G SYNE1 Missense_Mutation p.V7096L 0.26 benign(0.26) TCGA-AO-A124-01 6 32097227 32097227 G C FKBPL Missense_Mutation p.R111G 0.41 tolerated(0.11) benign(0.06) TCGA-AO-A124-01 6 36882408 36882408 G A C6orf89 Missense_Mutation p.G219R 0.22 tolerated(0.08) possibly_damaging(0.804) TCGA-AO-A124-01 6 4032461 4032461 G C PRPF4B Missense_Mutation p.R237T 0.44 deleterious_low_confidence(0) possibly_damaging(0.468) TCGA-AO-A124-01 6 41738737 41738737 C T FRS3 Missense_Mutation p.E367K 0.59 tolerated(0.66) benign(0.359) TCGA-AO-A124-01 6 84324580 84324580 C T SNAP91 Missense_Mutation p.E294K 0.53 tolerated(0.49) unknown(0) TCGA-AO-A124-01 6 85457662 85457662 G T TBX18 Silent p.T305T 0.55 TCGA-AO-A124-01 7 100417260 100417260 C T EPHB4 Missense_Mutation p.V406I 0.21 tolerated(0.94) benign(0.217) TCGA-AO-A124-01 7 100730642 100730642 G T TRIM56 Missense_Mutation p.D17Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-AO-A124-01 7 117282532 117282532 T C CFTR Missense_Mutation p.L1253S 0.38 deleterious(0) probably_damaging(0.992) TCGA-AO-A124-01 7 123109282 123109282 T C IQUB Missense_Mutation p.K523E 0.05 deleterious(0) probably_damaging(0.987) TCGA-AO-A124-01 7 127235672 127235672 C A FSCN3 Silent p.I152I 0.85 TCGA-AO-A124-01 7 130140628 130140628 A C MEST Splice_Site p.X216_splice 0.78 TCGA-AO-A124-01 7 138732379 138732379 C A ZC3HAV1 Silent p.V890V 0.42 TCGA-AO-A124-01 7 140154472 140154472 A T MKRN1 Missense_Mutation p.F432I 0.87 deleterious(0.02) benign(0.015) TCGA-AO-A124-01 7 142510440 142510440 C G TRBV30 Missense_Mutation p.A56P 0.37 tolerated(0.23) benign(0.012) TCGA-AO-A124-01 7 148963924 148963924 C T ZNF783 Silent p.F145F 0.41 TCGA-AO-A124-01 7 150389497 150389497 C T GIMAP2 Silent p.S41S 0.66 TCGA-AO-A124-01 7 154863184 154863184 G T HTR5A Missense_Mutation p.C192F 0.63 deleterious(0.01) possibly_damaging(0.624) TCGA-AO-A124-01 7 42088133 42088133 C T GLI3 Silent p.S212S 0.47 TCGA-AO-A124-01 7 43601517 43601517 C A HECW1 Missense_Mutation p.L1605I 0.23 tolerated(0.42) possibly_damaging(0.759) TCGA-AO-A124-01 7 44606075 44606075 T C DDX56 Missense_Mutation p.K513R 0.15 tolerated(0.51) benign(0.005) TCGA-AO-A124-01 7 73462496 73462496 G A ELN Missense_Mutation p.G237D 0.19 unknown(0) TCGA-AO-A124-01 7 80447661 80447661 G A SEMA3C Missense_Mutation p.A134V 0.27 deleterious(0) probably_damaging(0.999) TCGA-AO-A124-01 7 80447662 80447662 C T SEMA3C Missense_Mutation p.A134T 0.27 deleterious(0.01) probably_damaging(1) TCGA-AO-A124-01 7 825272 825272 C T HEATR2 Silent p.A850A 0.21 TCGA-AO-A124-01 7 92099631 92099631 G C ERVW-1 Missense_Mutation p.P22R 0.23 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-AO-A124-01 8 13357276 13357276 G T DLC1 Missense_Mutation p.A102D 0.79 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AO-A124-01 8 142489405 142489405 G A MROH5 3'UTR 0.91 TCGA-AO-A124-01 8 52287255 52287255 G A PXDNL Silent p.P1198P 0.78 TCGA-AO-A124-01 8 57130028 57130028 A G CHCHD7 3'UTR 0.47 TCGA-AO-A124-01 9 123937323 123937323 C G CNTRL Missense_Mutation p.Q2259E 0.81 benign(0.41) TCGA-AO-A124-01 9 127316795 127316795 C T NR6A1 Missense_Mutation p.R66H 0.38 deleterious(0) probably_damaging(0.999) TCGA-AO-A124-01 9 137808243 137808243 C A FCN1 Silent p.L56L 0.49 TCGA-AO-A124-01 9 140142119 140142119 C T FAM166A Missense_Mutation p.V17I 0.80 tolerated(1) benign(0.002) TCGA-AO-A124-01 9 2058393 2058393 C G SMARCA2 Missense_Mutation p.H484D 0.13 benign(0.008) TCGA-AO-A124-01 9 34269280 34269280 G T KIF24 Missense_Mutation p.A473E 0.21 deleterious(0) probably_damaging(0.997) TCGA-AO-A124-01 9 35078182 35078182 G C FANCG Missense_Mutation p.L156V 0.18 deleterious(0.01) possibly_damaging(0.507) TCGA-AO-A124-01 9 86902989 86902989 G T SLC28A3 Silent p.L418L 0.78 TCGA-AO-A124-01 X 119037310 119037310 G C AKAP14 Missense_Mutation p.A42P 0.81 tolerated(0.17) benign(0.022) TCGA-AO-A124-01 X 123630946 123630946 A G TENM1 Silent p.D1205D 0.38 TCGA-AO-A124-01 X 134167492 134167492 C A FAM127A 3'UTR 0.80 TCGA-AO-A124-01 X 138619276 138619276 G A F9 Missense_Mutation p.E66K 0.08 deleterious(0) probably_damaging(0.999) TCGA-AO-A124-01 X 23956748 23956748 A T CXorf58 Missense_Mutation p.Q290H 0.86 deleterious(0) probably_damaging(0.983) TCGA-AO-A124-01 X 24608286 24608286 T C PCYT1B Missense_Mutation p.S114G 0.83 tolerated(0.11) benign(0.338) TCGA-AO-A124-01 X 38033500 38033544 GAATGTCGCACCTGGTTCCCAGGGCTGTTTTGTAGTATCCTCCTT - SRPX In_Frame_Del p.Q73_I87del 0.77 TCGA-AO-A124-01 X 70604808 70604808 A G TAF1 Missense_Mutation p.D732G 0.83 deleterious(0) probably_damaging(0.972) TCGA-AO-A124-01 X 83129529 83129529 G C CYLC1 Missense_Mutation p.E605Q 0.41 deleterious(0.05) possibly_damaging(0.888) TCGA-AO-A125-01 11 50003775 50003775 T A OR4C12 Missense_Mutation p.K88I 0.11 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-AO-A125-01 11 61914264 61914264 C G INCENP Silent p.R698R 0.23 TCGA-AO-A125-01 15 78758680 78758680 A G IREB2 Missense_Mutation p.K160E 0.36 tolerated(0.3) benign(0.031) TCGA-AO-A125-01 15 83710593 83710593 G A BTBD1 Missense_Mutation p.A250V 0.45 deleterious(0.04) benign(0.314) TCGA-AO-A125-01 15 83710594 83710594 C T BTBD1 Missense_Mutation p.A250T 0.44 deleterious(0.02) possibly_damaging(0.833) TCGA-AO-A125-01 16 21739637 21739637 G A OTOA Missense_Mutation p.D698N 0.08 tolerated(0.46) benign(0.005) TCGA-AO-A125-01 16 23535677 23535677 C T EARS2 3'UTR 0.24 TCGA-AO-A125-01 16 30369292 30369292 G A TBC1D10B Silent p.A800A 0.05 TCGA-AO-A125-01 16 71008518 71008518 G A HYDIN Nonsense_Mutation p.R1610* 0.96 TCGA-AO-A125-01 17 17900808 17900808 A T LRRC48 Missense_Mutation p.I287F 0.52 deleterious(0) possibly_damaging(0.482) TCGA-AO-A125-01 17 18785979 18785979 C T PRPSAP2 Nonsense_Mutation p.Q171* 0.62 TCGA-AO-A125-01 17 36453190 36453190 G C MRPL45 Missense_Mutation p.R14T 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-AO-A125-01 17 80054315 80054315 C G FASN Missense_Mutation p.E3Q 0.30 deleterious(0.01) possibly_damaging(0.835) TCGA-AO-A125-01 18 33706858 33706858 G C SLC39A6 Missense_Mutation p.P38R 0.49 deleterious(0.02) benign(0.257) TCGA-AO-A125-01 19 3908273 3908273 C T ATCAY Silent p.Y184Y 0.44 TCGA-AO-A125-01 19 47207835 47207835 G A PRKD2 Missense_Mutation p.R195C 0.57 deleterious(0.01) possibly_damaging(0.791) TCGA-AO-A125-01 19 58906065 58906065 A G RPS5 Missense_Mutation p.Y188C 0.03 deleterious(0) probably_damaging(0.983) TCGA-AO-A125-01 19 8551058 8551058 G A HNRNPM Silent p.E582E 0.48 TCGA-AO-A125-01 1 104116388 104116388 G A AMY2B Missense_Mutation p.R191H 0.48 deleterious(0.01) benign(0.117) TCGA-AO-A125-01 1 156305652 156305652 C G CCT3 Missense_Mutation p.R20T 0.21 deleterious(0.03) possibly_damaging(0.621) TCGA-AO-A125-01 1 156622582 156622582 A G BCAN Missense_Mutation p.N614D 0.34 tolerated(0.29) benign(0.002) TCGA-AO-A125-01 1 15694118 15694118 G A FHAD1 Missense_Mutation p.R318K 0.71 tolerated(0.07) benign(0.43) TCGA-AO-A125-01 1 157667171 157667171 G T FCRL3 Silent p.P201P 0.52 TCGA-AO-A125-01 1 16952334 16952334 G A CROCCP2 3'Flank 0.30 TCGA-AO-A125-01 1 236894614 236894614 G T ACTN2 Missense_Mutation p.D233Y 0.25 deleterious(0) probably_damaging(1) TCGA-AO-A125-01 1 245861431 245861431 C T KIF26B Missense_Mutation p.P1950S 0.18 deleterious(0) unknown(0) TCGA-AO-A125-01 1 32210310 32210310 C T BAI2 Silent p.P287P 0.11 TCGA-AO-A125-01 22 17577966 17577966 G A IL17RA Silent p.T51T 0.45 TCGA-AO-A125-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.40 deleterious(0.02) probably_damaging(0.959) TCGA-AO-A125-01 3 44441887 44441887 G A TCAIM Missense_Mutation p.R309K 0.53 tolerated(0.51) benign(0.002) TCGA-AO-A125-01 4 4199797 4199797 G A OTOP1 Missense_Mutation p.T255M 0.53 deleterious(0) probably_damaging(0.967) TCGA-AO-A125-01 5 140208763 140208763 G A PCDHA6 Missense_Mutation p.A363T 0.44 tolerated_low_confidence(0.07) benign(0.429) TCGA-AO-A125-01 5 176308376 176308376 G A HK3 Missense_Mutation p.R852W 0.12 deleterious(0.02) probably_damaging(1) TCGA-AO-A125-01 5 80390150 80390150 G A RASGRF2 Silent p.L529L 0.32 TCGA-AO-A125-01 6 106553787 106553787 C T PRDM1 Silent p.F584F 0.48 TCGA-AO-A125-01 7 100170189 100170189 C T SAP25 Missense_Mutation p.M107I 0.31 deleterious(0.03) benign(0.021) TCGA-AO-A125-01 7 120767191 120767191 G A CPED1 Silent p.E394E 0.08 TCGA-AO-A125-01 7 151880094 151880094 C A KMT2C Nonsense_Mutation p.E1744* 0.67 TCGA-AO-A125-01 8 30701516 30701516 T A TEX15 Missense_Mutation p.N1673I 0.58 deleterious(0) probably_damaging(0.971) TCGA-AO-A125-01 8 3855433 3855433 T C CSMD1 Silent p.P270P 0.31 TCGA-AO-A125-01 9 102861304 102861304 C A ERP44 5'UTR 0.61 TCGA-AO-A125-01 9 95277299 95277301 TCT - ECM2 In_Frame_Del p.E222del 0.41 TCGA-AO-A125-01 X 154293522 154293522 C T CMC4 Intron 0.12 TCGA-AO-A125-01 X 18969226 18969226 G T PHKA2 Silent p.A150A 0.65 TCGA-AO-A125-01 X 70643881 70643881 A T TAF1 Missense_Mutation p.I1565F 0.08 deleterious(0) probably_damaging(0.999) TCGA-AO-A125-01 X 72674300 72674300 C T CDX4 Missense_Mutation p.S245L 0.63 tolerated(0.08) probably_damaging(0.968) TCGA-AO-A126-01 10 105657473 105657473 G T OBFC1 Missense_Mutation p.P196T 0.43 tolerated(0.12) benign(0.05) TCGA-AO-A126-01 10 111892110 111892110 A T ADD3 Missense_Mutation p.I594F 0.34 tolerated(0.19) benign(0.082) TCGA-AO-A126-01 11 64684655 64684655 G A ATG2A 5'UTR 0.31 TCGA-AO-A126-01 11 70331577 70331577 G A SHANK2 Silent p.D1608D 0.19 TCGA-AO-A126-01 14 105477579 105477579 C T CDCA4 Missense_Mutation p.E230K 0.38 deleterious(0.02) possibly_damaging(0.616) TCGA-AO-A126-01 15 42986728 42986728 A - STARD9 Frame_Shift_Del p.K4258Rfs*29 0.10 TCGA-AO-A126-01 16 66918915 66918915 C T PDP2 Missense_Mutation p.S243L 0.66 deleterious(0) probably_damaging(0.997) TCGA-AO-A126-01 17 6606363 6606363 G A SLC13A5 Silent p.Y214Y 0.61 TCGA-AO-A126-01 19 57133612 57133612 C A ZNF71 Missense_Mutation p.N319K 0.36 tolerated(0.09) benign(0.067) TCGA-AO-A126-01 1 247836219 247836219 A C OR13G1 Missense_Mutation p.I42S 0.32 deleterious(0) probably_damaging(0.996) TCGA-AO-A126-01 1 8421526 8421526 A G RERE Missense_Mutation p.S681P 0.35 probably_damaging(0.993) TCGA-AO-A126-01 20 61522278 61522278 G A DIDO1 Intron 0.35 TCGA-AO-A126-01 22 22049730 22049730 T C PPIL2 Missense_Mutation p.C504R 0.44 tolerated(0.54) benign(0) TCGA-AO-A126-01 22 22300420 22300420 T C PPM1F Translation_Start_Site p.M1? 0.32 tolerated_low_confidence(0.07) benign(0.006) TCGA-AO-A126-01 2 204820385 204820385 G A ICOS Missense_Mutation p.E29K 0.14 tolerated(0.5) benign(0.023) TCGA-AO-A126-01 2 97355022 97355022 G A FER1L5 RNA 0.23 TCGA-AO-A126-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-AO-A126-01 4 113351611 113351611 G A ALPK1 Missense_Mutation p.R303H 0.17 deleterious(0.03) probably_damaging(0.921) TCGA-AO-A126-01 4 84368010 84368010 A T HELQ Missense_Mutation p.L457Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-AO-A126-01 5 147505286 147505286 G T SPINK5 Missense_Mutation p.D944Y 0.38 deleterious(0) probably_damaging(0.986) TCGA-AO-A126-01 5 61781290 61781290 G T IPO11 Splice_Site p.X446_splice 0.32 TCGA-AO-A126-01 6 57393113 57393113 C T PRIM2 Missense_Mutation p.H255Y 0.06 deleterious(0.01) possibly_damaging(0.863) TCGA-AO-A126-01 8 140631062 140631062 G A KCNK9 Silent p.H188H 0.31 TCGA-AO-A126-01 X 118587060 118587060 C A SLC25A43 3'UTR 0.30 TCGA-AO-A126-01 X 152936838 152936838 C T PNCK Intron 0.31 TCGA-AO-A126-01 X 75649280 75649280 C T MAGEE1 Silent p.S319S 0.44 TCGA-AO-A128-01 10 100193844 100193844 G A HPS1 Missense_Mutation p.R135W 0.23 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 10 102781608 102781608 T C PDZD7 Missense_Mutation p.S272G 0.11 tolerated(0.07) benign(0.208) TCGA-AO-A128-01 10 103530238 103530238 G A FGF8 Missense_Mutation p.R195W 0.12 deleterious(0) probably_damaging(0.992) TCGA-AO-A128-01 10 103569978 103569978 G A MGEA5 Missense_Mutation p.P148L 0.08 tolerated(0.08) possibly_damaging(0.672) TCGA-AO-A128-01 10 104129691 104129691 C T GBF1 Missense_Mutation p.P1096S 0.09 deleterious(0.01) possibly_damaging(0.78) TCGA-AO-A128-01 10 104157082 104157082 A G NFKB2 Missense_Mutation p.H140R 0.12 deleterious(0) probably_damaging(0.946) TCGA-AO-A128-01 10 105372694 105372694 C T SH3PXD2A Missense_Mutation p.V364M 0.12 tolerated(0.28) benign(0.006) TCGA-AO-A128-01 10 116014800 116014800 C A VWA2 Missense_Mutation p.P85H 0.17 deleterious(0) possibly_damaging(0.668) TCGA-AO-A128-01 10 11908697 11908697 C T PROSER2 Silent p.S102S 0.08 TCGA-AO-A128-01 10 123997481 123997481 A G TACC2 Missense_Mutation p.I2759M 0.16 probably_damaging(0.977) TCGA-AO-A128-01 10 124920053 124920053 G A BUB3 Missense_Mutation p.R183H 0.11 deleterious(0) possibly_damaging(0.823) TCGA-AO-A128-01 10 126670316 126670316 C A ZRANB1 Missense_Mutation p.S489Y 0.16 tolerated(0.14) probably_damaging(0.958) TCGA-AO-A128-01 10 129160423 129160423 A G DOCK1 Missense_Mutation p.I1106V 0.09 deleterious(0) benign(0.001) TCGA-AO-A128-01 10 129172101 129172101 C T DOCK1 Silent p.D1142D 0.09 TCGA-AO-A128-01 10 133787312 133787312 C T BNIP3 Missense_Mutation p.S61N 0.18 tolerated(0.23) probably_damaging(0.999) TCGA-AO-A128-01 10 133962991 133962991 T C JAKMIP3 Missense_Mutation p.Y642H 0.44 tolerated(0.09) possibly_damaging(0.465) TCGA-AO-A128-01 10 134906607 134906607 G A GPR123 Intron 0.37 TCGA-AO-A128-01 10 24813451 24813451 C A KIAA1217 Missense_Mutation p.H886N 0.07 deleterious(0) possibly_damaging(0.709) TCGA-AO-A128-01 10 25886809 25886809 C T GPR158 Missense_Mutation p.R752C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 10 27301888 27301888 T C ANKRD26 Missense_Mutation p.I1626V 0.18 tolerated(0.57) benign(0.054) TCGA-AO-A128-01 10 27389214 27389214 G A ANKRD26 Silent p.G14G 0.09 TCGA-AO-A128-01 10 30317049 30317049 C A KIAA1462 Missense_Mutation p.K676N 0.08 deleterious(0.02) possibly_damaging(0.668) TCGA-AO-A128-01 10 31139119 31139119 A G ZNF438 Missense_Mutation p.L72P 0.13 tolerated(1) benign(0) TCGA-AO-A128-01 10 35467876 35467876 T C CREM Silent p.H76H 0.15 TCGA-AO-A128-01 10 402276 402276 A C DIP2C Intron 0.16 TCGA-AO-A128-01 10 44112691 44112691 T C ZNF485 Silent p.H400H 0.16 TCGA-AO-A128-01 10 445105 445105 C T DIP2C Missense_Mutation p.G402S 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 10 49663123 49663123 G C ARHGAP22 Silent p.L254L 0.17 TCGA-AO-A128-01 10 5043771 5043771 G A AKR1C2 Silent p.L63L 0.11 TCGA-AO-A128-01 10 51769754 51769754 C T AGAP6 Silent p.D623D 0.09 TCGA-AO-A128-01 10 5437421 5437421 G T TUBAL3 Missense_Mutation p.Q89K 0.08 tolerated_low_confidence(0.4) benign(0.001) TCGA-AO-A128-01 10 55663026 55663026 A G PCDH15 Missense_Mutation p.F1160L 0.12 tolerated(0.06) probably_damaging(0.995) TCGA-AO-A128-01 10 5567123 5567123 C T CALML3 Silent p.D25D 0.11 TCGA-AO-A128-01 10 5808032 5808032 T C GDI2 Silent p.T425T 0.11 TCGA-AO-A128-01 10 6155523 6155523 T C RBM17 Silent p.P303P 0.08 TCGA-AO-A128-01 10 6264943 6264943 T C PFKFB3 Silent p.S403S 0.07 TCGA-AO-A128-01 10 68280490 68280490 A G CTNNA3 Silent p.S472S 0.15 TCGA-AO-A128-01 10 70516059 70516059 G A CCAR1 Missense_Mutation p.R552H 0.46 deleterious(0) probably_damaging(0.991) TCGA-AO-A128-01 10 70666715 70666715 A G DDX50 Silent p.S112S 0.56 TCGA-AO-A128-01 10 70737411 70737411 C T DDX21 Silent p.S623S 0.13 TCGA-AO-A128-01 10 70764842 70764842 C T KIAA1279 Missense_Mutation p.P189L 0.13 tolerated(0.1) benign(0.164) TCGA-AO-A128-01 10 71993076 71993076 C T PPA1 Missense_Mutation p.G3D 0.12 tolerated(0.59) benign(0.063) TCGA-AO-A128-01 10 72195385 72195385 C T NODAL Missense_Mutation p.R183Q 0.10 tolerated(0.49) benign(0.002) TCGA-AO-A128-01 10 73051401 73051401 C T UNC5B Silent p.L503L 0.13 TCGA-AO-A128-01 10 73485220 73485220 C T CDH23 Silent p.H1179H 0.10 TCGA-AO-A128-01 10 75408536 75408536 A G SYNPO2L Missense_Mutation p.S292P 0.14 deleterious(0) probably_damaging(0.993) TCGA-AO-A128-01 10 75865016 75865016 G A VCL Missense_Mutation p.R780H 0.18 tolerated(0.12) probably_damaging(0.999) TCGA-AO-A128-01 10 7605026 7605026 A G ITIH5 Missense_Mutation p.M950T 0.08 deleterious_low_confidence(0.05) benign(0) TCGA-AO-A128-01 10 76854371 76854371 C T DUSP13 3'Flank 0.12 TCGA-AO-A128-01 10 76855525 76855525 T C DUSP13 Missense_Mutation p.I118V 0.15 tolerated(0.51) benign(0) TCGA-AO-A128-01 10 88206188 88206188 G A WAPAL Missense_Mutation p.R1045W 0.11 deleterious(0) probably_damaging(0.977) TCGA-AO-A128-01 10 88717136 88717136 G A MMRN2 Missense_Mutation p.R55C 0.08 deleterious(0) probably_damaging(0.983) TCGA-AO-A128-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.25 TCGA-AO-A128-01 10 96117831 96117831 A C NOC3L Intron 0.21 TCGA-AO-A128-01 10 99683088 99683088 T C CRTAC1 Missense_Mutation p.E164G 0.11 tolerated(0.1) benign(0.334) TCGA-AO-A128-01 11 1026075 1026075 G A MUC6 Silent p.Y871Y 0.27 TCGA-AO-A128-01 11 103014126 103014126 T C DYNC2H1 Splice_Site p.X901_splice 0.10 TCGA-AO-A128-01 11 10800562 10800562 C T CTR9 Silent p.G1144G 0.13 TCGA-AO-A128-01 11 108381248 108381248 G A EXPH5 Silent p.N1662N 0.17 TCGA-AO-A128-01 11 117352731 117352731 G A DSCAML1 Missense_Mutation p.R896W 0.16 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 11 118986850 118986850 G A C2CD2L Missense_Mutation p.A670T 0.14 tolerated(0.41) benign(0.001) TCGA-AO-A128-01 11 124413044 124413044 A G OR8B12 Silent p.A169A 0.12 TCGA-AO-A128-01 11 124751205 124751205 T C ROBO3 3'UTR 0.07 TCGA-AO-A128-01 11 125875884 125875884 T G CDON Missense_Mutation p.S541R 0.25 tolerated(0.53) benign(0.001) TCGA-AO-A128-01 11 1263467 1263467 C T MUC5B Missense_Mutation p.P1786L 0.28 unknown(0) TCGA-AO-A128-01 11 1774867 1774867 C T CTSD Missense_Mutation p.G369S 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-AO-A128-01 11 18422500 18422500 A G LDHA Missense_Mutation p.I150V 0.10 tolerated(0.16) benign(0.098) TCGA-AO-A128-01 11 20636289 20636289 T C SLC6A5 Silent p.A350A 0.14 TCGA-AO-A128-01 11 27078797 27078797 G A BBOX1 Nonsense_Mutation p.W90* 0.13 TCGA-AO-A128-01 11 30033810 30033810 C T KCNA4 Missense_Mutation p.R139K 0.14 tolerated_low_confidence(0.91) benign(0.001) TCGA-AO-A128-01 11 32676507 32676507 T - CCDC73 Frame_Shift_Del p.A220Qfs*5 0.18 TCGA-AO-A128-01 11 380165 380165 G A B4GALNT4 Missense_Mutation p.R893H 0.28 deleterious(0) unknown(0) TCGA-AO-A128-01 11 3846609 3846609 C T PGAP2 Missense_Mutation p.A290V 0.24 deleterious(0) benign(0.327) TCGA-AO-A128-01 11 47270114 47270114 G A ACP2 Intron 0.29 TCGA-AO-A128-01 11 473896 473896 G T PTDSS2 Missense_Mutation p.G96C 0.14 deleterious(0) probably_damaging(0.995) TCGA-AO-A128-01 11 47611499 47611499 G A C1QTNF4 Silent p.S288S 0.11 TCGA-AO-A128-01 11 55944829 55944829 A G OR5J2 Missense_Mutation p.T246A 0.10 tolerated(0.05) benign(0.259) TCGA-AO-A128-01 11 56510933 56510933 A - OR9G4 Frame_Shift_Del p.S119Pfs*4 0.21 TCGA-AO-A128-01 11 57099320 57099320 A G SSRP1 Missense_Mutation p.S349P 0.13 tolerated(0.05) benign(0.241) TCGA-AO-A128-01 11 57310828 57310828 C T SMTNL1 Missense_Mutation p.A256V 0.21 tolerated(0.33) benign(0) TCGA-AO-A128-01 11 60702776 60702776 C T TMEM132A Missense_Mutation p.T631M 0.08 deleterious(0.02) probably_damaging(0.977) TCGA-AO-A128-01 11 61295496 61295496 G A SYT7 Silent p.S246S 0.13 TCGA-AO-A128-01 11 61404252 61404252 A G RPLP0P2 RNA 0.14 TCGA-AO-A128-01 11 61490938 61490938 A G DAGLA Missense_Mutation p.S148G 0.14 tolerated(0.19) benign(0.162) TCGA-AO-A128-01 11 61908223 61908223 A G INCENP Missense_Mutation p.Q464R 0.27 deleterious(0.03) unknown(0) TCGA-AO-A128-01 11 62289327 62289327 T - AHNAK Frame_Shift_Del p.M4188Cfs*4 0.13 TCGA-AO-A128-01 11 62293764 62293764 T C AHNAK Missense_Mutation p.M2709V 0.29 probably_damaging(0.968) TCGA-AO-A128-01 11 62300249 62300249 T C AHNAK Missense_Mutation p.N547S 0.09 benign(0.009) TCGA-AO-A128-01 11 62398080 62398081 CT - GANAB Frame_Shift_Del p.R482Afs*31 0.22 TCGA-AO-A128-01 11 6245408 6245408 C T FAM160A2 Missense_Mutation p.R70H 0.15 deleterious(0.04) benign(0.008) TCGA-AO-A128-01 11 62487606 62487606 G A HNRNPUL2 Missense_Mutation p.R557W 0.15 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 11 62567879 62567879 T G NXF1 Missense_Mutation p.D329A 0.31 tolerated(0.14) benign(0.002) TCGA-AO-A128-01 11 64390490 64390490 C T NRXN2 Missense_Mutation p.G1303D 0.19 tolerated(0.14) probably_damaging(0.986) TCGA-AO-A128-01 11 64695803 64695803 C T PPP2R5B Missense_Mutation p.R210C 0.05 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 11 65293598 65293598 G T SCYL1 Missense_Mutation p.A127S 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-AO-A128-01 11 65394380 65394380 G A PCNXL3 Missense_Mutation p.A1129T 0.23 deleterious(0) probably_damaging(0.995) TCGA-AO-A128-01 11 65481120 65481120 G A KAT5 Silent p.P199P 0.13 TCGA-AO-A128-01 11 65562191 65562191 T C OVOL1 Silent p.T167T 0.11 TCGA-AO-A128-01 11 65650877 65650877 G T CTSW Silent p.G334G 0.12 TCGA-AO-A128-01 11 66838015 66838015 T C RHOD Silent p.P150P 0.15 TCGA-AO-A128-01 11 67048216 67048216 C T ADRBK1 Missense_Mutation p.R173W 0.15 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 11 67057631 67057631 T C ANKRD13D Missense_Mutation p.V58A 0.11 tolerated(0.14) possibly_damaging(0.797) TCGA-AO-A128-01 11 67057774 67057774 A G ANKRD13D Intron 0.10 TCGA-AO-A128-01 11 68517942 68517942 C T MTL5 Missense_Mutation p.V63I 0.36 deleterious_low_confidence(0.01) benign(0) TCGA-AO-A128-01 11 68678968 68678968 C T IGHMBP2 Missense_Mutation p.A203V 0.14 deleterious(0) probably_damaging(0.983) TCGA-AO-A128-01 11 72554333 72554333 T - FCHSD2 Frame_Shift_Del p.K523Sfs*12 0.12 TCGA-AO-A128-01 11 73914814 73914814 A G PPME1 Missense_Mutation p.Q48R 0.12 tolerated(0.16) benign(0.003) TCGA-AO-A128-01 11 76372195 76372195 C T LRRC32 Missense_Mutation p.A148T 0.11 deleterious(0.02) benign(0.314) TCGA-AO-A128-01 11 9009803 9009803 G T NRIP3 Silent p.R67R 0.13 TCGA-AO-A128-01 11 99827679 99827679 A G CNTN5 Missense_Mutation p.K272R 0.36 tolerated(0.24) probably_damaging(0.969) TCGA-AO-A128-01 12 102151044 102151044 C T GNPTAB Missense_Mutation p.R1127H 0.38 tolerated(0.12) benign(0.273) TCGA-AO-A128-01 12 109185991 109185991 G A SSH1 Intron 0.32 TCGA-AO-A128-01 12 111893834 111893834 T C ATXN2 Missense_Mutation p.Q1248R 0.12 probably_damaging(0.989) TCGA-AO-A128-01 12 11214501 11214501 C T TAS2R46 Silent p.V131V 0.26 TCGA-AO-A128-01 12 115109929 115109929 G A TBX3 Missense_Mutation p.P650L 0.25 deleterious(0) benign(0.295) TCGA-AO-A128-01 12 117178189 117178189 T C RNFT2 5'UTR 0.31 TCGA-AO-A128-01 12 120750862 120750862 C A SIRT4 3'UTR 0.35 TCGA-AO-A128-01 12 124103306 124103306 G C DDX55 Missense_Mutation p.E419Q 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-AO-A128-01 12 124416307 124416307 C T DNAH10 Silent p.S4229S 0.31 TCGA-AO-A128-01 12 124887087 124887087 C T NCOR2 Silent p.Q501Q 0.34 TCGA-AO-A128-01 12 125621368 125621368 G A AACS Silent p.A613A 0.31 TCGA-AO-A128-01 12 132393760 132393760 T C ULK1 Missense_Mutation p.L215P 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 12 133349838 133349838 G T GOLGA3 Silent p.A1450A 0.25 TCGA-AO-A128-01 12 16753770 16753770 T C LMO3 Missense_Mutation p.K9E 0.16 tolerated(0.1) benign(0.017) TCGA-AO-A128-01 12 19518974 19518974 G A PLEKHA5 Missense_Mutation p.E1229K 0.16 tolerated(0.12) benign(0.029) TCGA-AO-A128-01 12 2061735 2061735 C G DCP1B Missense_Mutation p.Q457H 0.27 deleterious(0.03) benign(0.027) TCGA-AO-A128-01 12 21712043 21712043 T C GYS2 Silent p.R430R 0.11 TCGA-AO-A128-01 12 27840378 27840378 A G PPFIBP1 Missense_Mutation p.I776V 0.18 deleterious(0) probably_damaging(0.986) TCGA-AO-A128-01 12 3048601 3048601 G A TULP3 Intron 0.12 TCGA-AO-A128-01 12 3677985 3677985 A G PRMT8 Missense_Mutation p.T199A 0.09 deleterious(0.02) possibly_damaging(0.891) TCGA-AO-A128-01 12 3931108 3931108 G A PARP11 Missense_Mutation p.T160M 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-AO-A128-01 12 4764073 4764073 C T NDUFA9 Silent p.G101G 0.14 TCGA-AO-A128-01 12 48251360 48251360 C T VDR Missense_Mutation p.R180H 0.14 tolerated(0.3) benign(0.005) TCGA-AO-A128-01 12 50037096 50037096 C T PRPF40B Missense_Mutation p.P766S 0.28 tolerated_low_confidence(0.47) possibly_damaging(0.803) TCGA-AO-A128-01 12 50571187 50571187 T C LIMA1 Missense_Mutation p.N648S 0.11 tolerated(1) benign(0.001) TCGA-AO-A128-01 12 50754570 50754570 G A FAM186A Silent p.L184L 0.19 TCGA-AO-A128-01 12 51442870 51442870 A G LETMD1 Missense_Mutation p.Y59C 0.15 deleterious(0.03) probably_damaging(0.947) TCGA-AO-A128-01 12 52680929 52680929 C T KRT81 Missense_Mutation p.E402K 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-AO-A128-01 12 52938505 52938505 G A KRT71 Silent p.G461G 0.12 TCGA-AO-A128-01 12 53447340 53447340 G A TENC1 Intron 0.42 TCGA-AO-A128-01 12 53899482 53899482 C A TARBP2 Missense_Mutation p.T264N 0.08 deleterious(0.01) probably_damaging(0.951) TCGA-AO-A128-01 12 54403416 54403416 C A HOXC8 Silent p.S116S 0.12 TCGA-AO-A128-01 12 54686225 54686225 A G NFE2 Missense_Mutation p.L352P 0.12 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 12 56221320 56221320 G A DNAJC14 Nonsense_Mutation p.Q375* 0.11 TCGA-AO-A128-01 12 57883310 57883310 T C MARS Missense_Mutation p.L128S 0.12 deleterious(0.01) benign(0.168) TCGA-AO-A128-01 12 57919306 57919306 C - MBD6 Frame_Shift_Del p.P187Qfs*81 0.26 TCGA-AO-A128-01 12 58207969 58207969 T C AVIL Missense_Mutation p.N36S 0.24 tolerated(0.43) benign(0.003) TCGA-AO-A128-01 12 6309663 6309663 A G CD9 5'UTR 0.17 TCGA-AO-A128-01 12 6562312 6562312 T C TAPBPL Silent p.R48R 0.13 TCGA-AO-A128-01 12 6804305 6804305 A G PIANP Intron 0.21 TCGA-AO-A128-01 12 6858087 6858087 A G MLF2 Silent p.R207R 0.17 TCGA-AO-A128-01 12 69260781 69260781 T C CPM Missense_Mutation p.T279A 0.09 deleterious(0) possibly_damaging(0.8) TCGA-AO-A128-01 12 7942160 7942160 T C NANOG 5'UTR 0.08 TCGA-AO-A128-01 12 88510829 88510829 A G CEP290 Missense_Mutation p.M602T 0.11 benign(0.018) TCGA-AO-A128-01 12 9242994 9242994 C T A2M Missense_Mutation p.G852R 0.14 tolerated(0.17) benign(0.015) TCGA-AO-A128-01 12 95488438 95488438 G A FGD6 Missense_Mutation p.A1177V 0.37 deleterious(0) possibly_damaging(0.818) TCGA-AO-A128-01 12 97328875 97328875 T C NEDD1 Missense_Mutation p.V211A 0.33 tolerated(1) benign(0) TCGA-AO-A128-01 13 100193853 100193853 A G TM9SF2 Missense_Mutation p.M317V 0.11 deleterious(0.02) possibly_damaging(0.588) TCGA-AO-A128-01 13 101266614 101266614 T C TMTC4 Missense_Mutation p.H636R 0.27 deleterious(0) probably_damaging(0.972) TCGA-AO-A128-01 13 103382210 103382210 G A CCDC168 Missense_Mutation p.A2317V 0.10 deleterious(0.02) unknown(0) TCGA-AO-A128-01 13 108862917 108862917 C T LIG4 Missense_Mutation p.G234R 0.07 tolerated(0.42) benign(0.001) TCGA-AO-A128-01 13 111927123 111927123 T C ARHGEF7 Missense_Mutation p.F441L 0.14 deleterious(0.03) benign(0.228) TCGA-AO-A128-01 13 113803484 113803484 T C F10 Missense_Mutation p.S374P 0.17 deleterious(0.03) probably_damaging(0.978) TCGA-AO-A128-01 13 20580593 20580593 A G ZMYM2 Missense_Mutation p.N460S 0.11 deleterious(0) possibly_damaging(0.494) TCGA-AO-A128-01 13 23913916 23913916 A G SACS Missense_Mutation p.Y1367H 0.17 probably_damaging(0.997) TCGA-AO-A128-01 13 25670379 25670379 G A PABPC3 Missense_Mutation p.V15M 0.08 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 13 25671457 25671457 G A PABPC3 Missense_Mutation p.R374H 0.15 deleterious(0.01) possibly_damaging(0.781) TCGA-AO-A128-01 13 25744017 25744017 G T AMER2 Missense_Mutation p.L581M 0.13 tolerated(0.24) possibly_damaging(0.839) TCGA-AO-A128-01 13 28877392 28877392 T C FLT1 Missense_Mutation p.D1310G 0.21 tolerated(0.15) benign(0.01) TCGA-AO-A128-01 13 32835905 32835905 C T FRY Silent p.S2523S 0.12 TCGA-AO-A128-01 13 36239286 36239286 C T NBEA Silent p.V2788V 0.15 TCGA-AO-A128-01 13 41704757 41704757 T C KBTBD6 Missense_Mutation p.T631A 0.11 tolerated_low_confidence(0.16) benign(0.008) TCGA-AO-A128-01 13 47466654 47466654 A G HTR2A Missense_Mutation p.S162P 0.13 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 13 52542600 52542600 C T ATP7B Missense_Mutation p.D563N 0.15 tolerated(0.07) benign(0.201) TCGA-AO-A128-01 13 84454258 84454258 A G SLITRK1 Missense_Mutation p.I462T 0.07 deleterious(0) probably_damaging(0.942) TCGA-AO-A128-01 13 96294001 96294001 T C DZIP1 Missense_Mutation p.S49G 0.16 tolerated(0.24) benign(0.002) TCGA-AO-A128-01 14 100795262 100795262 G A SLC25A47 Missense_Mutation p.C176Y 0.11 tolerated(0.47) benign(0.063) TCGA-AO-A128-01 14 101350748 101350748 G A RTL1 Silent p.V126V 0.12 TCGA-AO-A128-01 14 102508438 102508438 C T DYNC1H1 Missense_Mutation p.T4064M 0.29 benign(0.042) TCGA-AO-A128-01 14 104136570 104136570 T C KLC1 Missense_Mutation p.Y313H 0.18 deleterious(0.03) benign(0.338) TCGA-AO-A128-01 14 104177502 104177502 G A XRCC3 5'UTR 0.30 TCGA-AO-A128-01 14 104571759 104571759 C A ASPG Missense_Mutation p.S382Y 0.16 deleterious(0.01) benign(0.445) TCGA-AO-A128-01 14 104638170 104638170 C T KIF26A Silent p.P408P 0.42 TCGA-AO-A128-01 14 105180655 105180655 C T INF2 Silent p.A1052A 0.31 TCGA-AO-A128-01 14 105643085 105643085 G A NUDT14 Missense_Mutation p.R72C 0.31 deleterious(0) probably_damaging(0.975) TCGA-AO-A128-01 14 21546604 21546604 G - ARHGEF40 Frame_Shift_Del p.A737Pfs*3 0.17 TCGA-AO-A128-01 14 21993615 21993615 G C SALL2 Missense_Mutation p.P83A 0.14 tolerated(0.23) benign(0.006) TCGA-AO-A128-01 14 22205109 22205109 G A TRAV4 Missense_Mutation p.S58N 0.08 tolerated(1) benign(0) TCGA-AO-A128-01 14 23533631 23533631 C T ACIN1 Missense_Mutation p.R850H 0.14 probably_damaging(0.998) TCGA-AO-A128-01 14 23586796 23586796 C T CEBPE Missense_Mutation p.R249H 0.16 deleterious(0) possibly_damaging(0.864) TCGA-AO-A128-01 14 23745659 23745659 G A HOMEZ Missense_Mutation p.R260W 0.24 deleterious(0.02) possibly_damaging(0.517) TCGA-AO-A128-01 14 23853881 23853881 C T MYH6 Missense_Mutation p.A1779T 0.39 deleterious(0.03) possibly_damaging(0.536) TCGA-AO-A128-01 14 23855583 23855583 C T MYH6 Missense_Mutation p.A1634T 0.40 deleterious(0.01) possibly_damaging(0.869) TCGA-AO-A128-01 14 24587674 24587674 T C DCAF11 Missense_Mutation p.W219R 0.15 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 14 24601441 24601441 G T FITM1 Missense_Mutation p.W96C 0.12 deleterious(0) probably_damaging(0.998) TCGA-AO-A128-01 14 24648665 24648665 C T REC8 Missense_Mutation p.R438W 0.35 deleterious(0.01) possibly_damaging(0.556) TCGA-AO-A128-01 14 24724650 24724650 G A TGM1 Missense_Mutation p.A522V 0.26 tolerated(0.4) probably_damaging(0.997) TCGA-AO-A128-01 14 29236583 29236583 A G FOXG1 Missense_Mutation p.H33R 0.09 tolerated_low_confidence(0.18) unknown(0) TCGA-AO-A128-01 14 32586415 32586415 C T ARHGAP5 Missense_Mutation p.P1263S 0.27 deleterious(0.01) possibly_damaging(0.64) TCGA-AO-A128-01 14 35557194 35557194 A G PPP2R3C Missense_Mutation p.I379T 0.08 tolerated(0.64) benign(0.009) TCGA-AO-A128-01 14 52509645 52509645 G A NID2 Silent p.F478F 0.18 TCGA-AO-A128-01 14 55203892 55203892 C - SAMD4A Frame_Shift_Del p.L291Cfs*7 0.18 TCGA-AO-A128-01 14 58875846 58875846 A G TIMM9 Missense_Mutation p.M59T 0.21 tolerated(0.11) possibly_damaging(0.777) TCGA-AO-A128-01 14 60977825 60977825 A C SIX6 Missense_Mutation p.Q199P 0.18 tolerated(0.4) benign(0) TCGA-AO-A128-01 14 64591874 64591874 C T SYNE2 Silent p.T4500T 0.10 TCGA-AO-A128-01 14 75416089 75416089 G A PGF Missense_Mutation p.P96S 0.14 deleterious(0.01) probably_damaging(0.926) TCGA-AO-A128-01 14 81737004 81737004 C T STON2 Intron 0.15 TCGA-AO-A128-01 14 81964780 81964780 T C SEL1L Missense_Mutation p.H317R 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-AO-A128-01 14 88935348 88935348 G A PTPN21 Missense_Mutation p.P1103L 0.18 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 14 91247102 91247102 G A TTC7B Missense_Mutation p.A142V 0.25 deleterious(0) probably_damaging(0.993) TCGA-AO-A128-01 14 91701374 91701374 G A GPR68 Silent p.D7D 0.13 TCGA-AO-A128-01 14 92548745 92548745 T G ATXN3 Missense_Mutation p.D225A 0.26 deleterious(0.01) benign(0.167) TCGA-AO-A128-01 14 94526827 94526827 G A DDX24 Silent p.L510L 0.13 TCGA-AO-A128-01 14 96813522 96813522 G A ATG2B Missense_Mutation p.R107C 0.33 tolerated(0.12) probably_damaging(0.995) TCGA-AO-A128-01 15 101438317 101438317 C T ALDH1A3 Silent p.S270S 0.13 TCGA-AO-A128-01 15 101566237 101566237 G A LRRK1 Missense_Mutation p.R767H 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-AO-A128-01 15 22863085 22863085 C T TUBGCP5 Silent p.C702C 0.31 TCGA-AO-A128-01 15 25959294 25959294 C T ATP10A Missense_Mutation p.S624N 0.18 tolerated(0.06) probably_damaging(0.937) TCGA-AO-A128-01 15 40318192 40318192 G A EIF2AK4 Silent p.E1468E 0.11 TCGA-AO-A128-01 15 40398245 40398245 A G BMF Missense_Mutation p.F15L 0.24 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AO-A128-01 15 41043661 41043661 A C RMDN3 Missense_Mutation p.S163A 0.17 tolerated(0.16) benign(0.421) TCGA-AO-A128-01 15 52446168 52446168 T C GNB5 Missense_Mutation p.K115R 0.16 tolerated(0.53) benign(0.007) TCGA-AO-A128-01 15 59502732 59502732 T C MYO1E Missense_Mutation p.D448G 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 15 63972327 63972327 T C HERC1 Silent p.A2166A 0.19 TCGA-AO-A128-01 15 66044753 66044753 C T DENND4A Silent p.T175T 0.17 TCGA-AO-A128-01 15 71256256 71256256 T C LRRC49 Silent p.D307D 0.13 TCGA-AO-A128-01 15 75498614 75498614 C T C15orf39 Silent p.T75T 0.24 TCGA-AO-A128-01 15 76019732 76019732 G A ODF3L1 Missense_Mutation p.A226T 0.22 tolerated(0.52) benign(0.016) TCGA-AO-A128-01 15 78473180 78473180 C T ACSBG1 Silent p.A390A 0.15 TCGA-AO-A128-01 15 79056154 79056154 G A ADAMTS7 Missense_Mutation p.R1543C 0.16 deleterious(0) probably_damaging(0.976) TCGA-AO-A128-01 15 81625307 81625307 T C TMC3 Missense_Mutation p.E919G 0.24 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-AO-A128-01 15 89198775 89198775 C T ISG20 3'UTR 0.32 TCGA-AO-A128-01 15 89828362 89828362 C T FANCI Silent p.V578V 0.12 TCGA-AO-A128-01 15 90349559 90349559 G A ANPEP Missense_Mutation p.R86W 0.27 deleterious(0.01) benign(0.004) TCGA-AO-A128-01 15 91419771 91419771 C A FURIN Missense_Mutation p.P119H 0.28 tolerated(0.25) possibly_damaging(0.487) TCGA-AO-A128-01 15 93482825 93482825 G A CHD2 Missense_Mutation p.R190H 0.10 tolerated(0.06) benign(0.092) TCGA-AO-A128-01 16 11785770 11785770 T C TXNDC11 Missense_Mutation p.T426A 0.16 deleterious(0.01) possibly_damaging(0.607) TCGA-AO-A128-01 16 133087 133087 C T MPG Nonsense_Mutation p.R118* 0.09 TCGA-AO-A128-01 16 1388580 1388580 C T BAIAP3 Silent p.S45S 0.20 TCGA-AO-A128-01 16 1398245 1398245 G A BAIAP3 Missense_Mutation p.G1135R 0.16 deleterious(0.04) benign(0.013) TCGA-AO-A128-01 16 1469979 1469979 T C C16orf91 Missense_Mutation p.M346V 0.08 deleterious_low_confidence(0) benign(0) TCGA-AO-A128-01 16 1486793 1486793 C T CCDC154 Missense_Mutation p.G446D 0.15 tolerated(0.26) possibly_damaging(0.662) TCGA-AO-A128-01 16 2134657 2134657 C T TSC2 Silent p.D1478D 0.12 TCGA-AO-A128-01 16 21969861 21969861 A G UQCRC2 Silent p.T91T 0.09 TCGA-AO-A128-01 16 22157664 22157664 C T VWA3A Silent p.S946S 0.22 TCGA-AO-A128-01 16 23226731 23226731 C T SCNN1G Missense_Mutation p.R631C 0.18 deleterious(0) possibly_damaging(0.863) TCGA-AO-A128-01 16 24104168 24104168 G A PRKCB Missense_Mutation p.V196I 0.10 tolerated(0.07) benign(0.345) TCGA-AO-A128-01 16 28507705 28507705 A G APOBR Missense_Mutation p.E448G 0.17 deleterious(0.03) possibly_damaging(0.607) TCGA-AO-A128-01 16 28975204 28975204 C T NFATC2IP 3'UTR 0.35 TCGA-AO-A128-01 16 30484196 30484196 T C ITGAL Missense_Mutation p.L13P 0.12 deleterious(0) benign(0.328) TCGA-AO-A128-01 16 30748610 30748610 G A SRCAP Missense_Mutation p.A2417T 0.15 benign(0.015) TCGA-AO-A128-01 16 31051129 31051129 G A STX4 3'UTR 0.25 TCGA-AO-A128-01 16 321297 321297 C T RGS11 Missense_Mutation p.G256D 0.11 tolerated(0.09) benign(0.006) TCGA-AO-A128-01 16 335568 335568 C T PDIA2 Silent p.L328L 0.16 TCGA-AO-A128-01 16 3367335 3367335 G A ZNF75A Missense_Mutation p.M119I 0.15 tolerated(0.33) benign(0.001) TCGA-AO-A128-01 16 3712870 3712870 G A TRAP1 Intron 0.14 TCGA-AO-A128-01 16 3778245 3778245 A G CREBBP Missense_Mutation p.M2268T 0.14 unknown(0) TCGA-AO-A128-01 16 4390323 4390323 C T CORO7-PAM16 Silent p.T1048T 0.24 TCGA-AO-A128-01 16 4650297 4650297 C T C16orf96 Silent p.P1135P 0.19 TCGA-AO-A128-01 16 54966396 54966396 C T IRX5 Intron 0.14 TCGA-AO-A128-01 16 56518677 56518679 GAA - BBS2 In_Frame_Del p.S721del 0.17 TCGA-AO-A128-01 16 56899202 56899202 C T SLC12A3 Missense_Mutation p.R19C 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-AO-A128-01 16 57292372 57292372 A G PLLP Splice_Site p.X144_splice 0.12 TCGA-AO-A128-01 16 57463180 57463180 C T CIAPIN1 Missense_Mutation p.D281N 0.12 deleterious(0.04) possibly_damaging(0.879) TCGA-AO-A128-01 16 58030923 58030923 C T ZNF319 Missense_Mutation p.R416Q 0.10 tolerated(0.45) probably_damaging(0.99) TCGA-AO-A128-01 16 58071385 58071385 C T MMP15 Missense_Mutation p.R58W 0.30 deleterious(0) probably_damaging(0.993) TCGA-AO-A128-01 16 599131 599131 A G CAPN15 Missense_Mutation p.R530G 0.18 tolerated(0.98) benign(0) TCGA-AO-A128-01 16 630909 630909 C A PIGQ Missense_Mutation p.L490I 0.30 tolerated(0.16) benign(0.093) TCGA-AO-A128-01 16 67063684 67063684 C T CBFB Nonsense_Mutation p.Q45* 0.46 TCGA-AO-A128-01 16 67913803 67913803 C T EDC4 Silent p.S624S 0.26 TCGA-AO-A128-01 16 681257 681257 C A WFIKKN1 Missense_Mutation p.P2T 0.28 tolerated_low_confidence(0.85) unknown(0) TCGA-AO-A128-01 16 68404921 68404921 G A SMPD3 Silent p.D388D 0.20 TCGA-AO-A128-01 16 68867203 68867203 C T CDH1 Missense_Mutation p.A817V 0.18 deleterious(0.04) probably_damaging(1) TCGA-AO-A128-01 16 698297 698297 T C FAM195A 3'UTR 0.15 TCGA-AO-A128-01 16 69973017 69973017 G A WWP2 Missense_Mutation p.E811K 0.28 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 16 70187296 70187296 C T PDPR Silent p.Y685Y 0.06 TCGA-AO-A128-01 16 70934981 70934981 C T HYDIN Missense_Mutation p.E2992K 0.06 benign(0) TCGA-AO-A128-01 16 72130189 72130189 C T DHX38 Missense_Mutation p.R45C 0.13 deleterious(0) possibly_damaging(0.876) TCGA-AO-A128-01 16 74726290 74726290 A G MLKL Missense_Mutation p.L162P 0.11 tolerated(0.06) probably_damaging(0.962) TCGA-AO-A128-01 16 75033946 75033946 A G ZNRF1 Missense_Mutation p.D126G 0.22 tolerated(0.34) benign(0.014) TCGA-AO-A128-01 16 75270832 75270832 T C BCAR1 Missense_Mutation p.Y333C 0.17 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 16 76495852 76495852 G T CNTNAP4 Splice_Site p.X372_splice 0.09 TCGA-AO-A128-01 16 80718448 80718448 C T CDYL2 Silent p.A201A 0.10 TCGA-AO-A128-01 16 8738569 8738569 G A METTL22 Missense_Mutation p.R389H 0.17 deleterious(0) probably_damaging(0.987) TCGA-AO-A128-01 16 88780094 88780094 C T CTU2 Missense_Mutation p.R305W 0.09 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 16 89785449 89785449 A G VPS9D1 Missense_Mutation p.V54A 0.14 tolerated(1) benign(0.001) TCGA-AO-A128-01 17 12913967 12913967 A G ELAC2 Missense_Mutation p.V234A 0.07 tolerated(0.85) benign(0.001) TCGA-AO-A128-01 17 1538656 1538656 C T SCARF1 Missense_Mutation p.R630Q 0.15 tolerated(1) benign(0.001) TCGA-AO-A128-01 17 1580872 1580872 G T PRPF8 Silent p.A657A 0.22 TCGA-AO-A128-01 17 15968868 15968868 G A NCOR1 Missense_Mutation p.R1628C 0.22 probably_damaging(0.997) TCGA-AO-A128-01 17 16335335 16335335 T C TRPV2 Silent p.N570N 0.19 TCGA-AO-A128-01 17 17900948 17900948 G A LRRC48 Silent p.S333S 0.40 TCGA-AO-A128-01 17 18205630 18205630 C A TOP3A Missense_Mutation p.E254D 0.28 deleterious(0.04) possibly_damaging(0.78) TCGA-AO-A128-01 17 18225993 18225993 G A SMCR8 Missense_Mutation p.S808N 0.16 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 17 18541993 18541993 G A TBC1D28 Missense_Mutation p.R74C 0.23 tolerated(0.13) benign(0.046) TCGA-AO-A128-01 17 19284193 19284193 C T MAPK7 Missense_Mutation p.T224M 0.16 deleterious(0) possibly_damaging(0.856) TCGA-AO-A128-01 17 19285139 19285139 T C MAPK7 Missense_Mutation p.V508A 0.26 deleterious(0) unknown(0) TCGA-AO-A128-01 17 19315830 19315830 A C RNF112 Missense_Mutation p.K39Q 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.859) TCGA-AO-A128-01 17 27573889 27573889 C T CRYBA1 Missense_Mutation p.T3I 0.09 tolerated(0.09) unknown(0) TCGA-AO-A128-01 17 27901887 27901887 C T GIT1 Missense_Mutation p.A716T 0.11 tolerated(0.25) benign(0.014) TCGA-AO-A128-01 17 293239 293239 C T FAM101B Missense_Mutation p.D51N 0.17 tolerated(0.55) benign(0.041) TCGA-AO-A128-01 17 3301451 3301451 A G OR1E1 Missense_Mutation p.M85T 0.08 deleterious(0) possibly_damaging(0.461) TCGA-AO-A128-01 17 3336293 3336293 A C OR1E2 Silent p.T281T 0.13 TCGA-AO-A128-01 17 33771867 33771867 G C SLFN13 Missense_Mutation p.S278C 0.15 tolerated(0.07) benign(0.086) TCGA-AO-A128-01 17 3422087 3422087 C T TRPV3 Missense_Mutation p.G623D 0.13 tolerated(0.25) benign(0.189) TCGA-AO-A128-01 17 35478306 35478306 T C ACACA Missense_Mutation p.N2082S 0.21 deleterious(0) benign(0.316) TCGA-AO-A128-01 17 35902636 35902636 T C SYNRG Silent p.G880G 0.28 TCGA-AO-A128-01 17 3786401 3786401 G A CAMKK1 Missense_Mutation p.R195W 0.12 deleterious(0) probably_damaging(0.996) TCGA-AO-A128-01 17 37881061 37881061 T C ERBB2 Missense_Mutation p.V797A 0.13 deleterious(0) possibly_damaging(0.899) TCGA-AO-A128-01 17 38243001 38243001 C T THRA Silent p.D206D 0.22 TCGA-AO-A128-01 17 38253389 38253389 G - NR1D1 Frame_Shift_Del p.P100Lfs*26 0.14 TCGA-AO-A128-01 17 38788559 38788559 C T SMARCE1 Missense_Mutation p.R201H 0.19 tolerated(0.05) benign(0.028) TCGA-AO-A128-01 17 39553614 39553614 T C KRT31 Missense_Mutation p.M60V 0.15 deleterious(0.02) possibly_damaging(0.887) TCGA-AO-A128-01 17 40087052 40087052 T C TTC25 RNA 0.16 TCGA-AO-A128-01 17 40481576 40481576 T C STAT3 Missense_Mutation p.H410R 0.15 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 17 40557081 40557081 G A PTRF Missense_Mutation p.T266M 0.12 deleterious(0) probably_damaging(0.994) TCGA-AO-A128-01 17 40738079 40738079 T C FAM134C Missense_Mutation p.Y194C 0.12 deleterious(0) probably_damaging(0.987) TCGA-AO-A128-01 17 40826394 40826394 T G PLEKHH3 Silent p.R66R 0.07 TCGA-AO-A128-01 17 41108449 41108449 A G AARSD1 Missense_Mutation p.L173P 0.09 deleterious(0.02) benign(0.041) TCGA-AO-A128-01 17 41365040 41365040 T C TMEM106A Intron 0.12 TCGA-AO-A128-01 17 41598850 41598850 A C DHX8 Silent p.P1060P 0.10 TCGA-AO-A128-01 17 43213876 43213876 G A ACBD4 Missense_Mutation p.R33H 0.30 deleterious(0.03) benign(0.167) TCGA-AO-A128-01 17 43318501 43318501 A G FMNL1 Silent p.T412T 0.09 TCGA-AO-A128-01 17 4434391 4434391 G A SPNS2 Missense_Mutation p.G257R 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-AO-A128-01 17 45234331 45234331 T - CDC27 Frame_Shift_Del p.T264Lfs*6 0.08 TCGA-AO-A128-01 17 47375977 47375977 G - ZNF652 Frame_Shift_Del p.P540Lfs*43 0.22 TCGA-AO-A128-01 17 47781460 47781460 A G SLC35B1 Splice_Site p.X219_splice 0.13 TCGA-AO-A128-01 17 48218667 48218667 G A PPP1R9B Missense_Mutation p.A564V 0.29 deleterious(0) possibly_damaging(0.877) TCGA-AO-A128-01 17 4936307 4936307 C T SLC52A1 Missense_Mutation p.S431N 0.12 tolerated(0.47) benign(0.318) TCGA-AO-A128-01 17 5009308 5009308 T C ZNF232 Silent p.S382S 0.14 TCGA-AO-A128-01 17 56400673 56400673 G A BZRAP1 Nonsense_Mutation p.R364* 0.26 TCGA-AO-A128-01 17 56581521 56581521 A G MTMR4 Missense_Mutation p.C516R 0.10 tolerated(0.74) benign(0.001) TCGA-AO-A128-01 17 60140426 60140426 A G MED13 Splice_Site p.X101_splice 0.12 TCGA-AO-A128-01 17 61568598 61568598 A G ACE Missense_Mutation p.E923G 0.24 tolerated(0.2) possibly_damaging(0.57) TCGA-AO-A128-01 17 61972880 61972880 A G CSH1 Missense_Mutation p.Y137H 0.14 tolerated(0.07) benign(0.243) TCGA-AO-A128-01 17 62079133 62079133 G A C17orf72 Missense_Mutation p.R170Q 0.12 deleterious_low_confidence(0.02) benign(0) TCGA-AO-A128-01 17 65021037 65021037 C T CACNG4 Silent p.G122G 0.15 TCGA-AO-A128-01 17 66872814 66872814 C T ABCA8 Silent p.Q1370Q 0.11 TCGA-AO-A128-01 17 72847756 72847756 A G GRIN2C Missense_Mutation p.M358T 0.10 deleterious(0) benign(0.263) TCGA-AO-A128-01 17 73124792 73124792 C A ARMC7 Missense_Mutation p.P86T 0.13 tolerated(0.39) benign(0.028) TCGA-AO-A128-01 17 7345991 7345991 C T FGF11 Missense_Mutation p.R163C 0.16 deleterious(0) probably_damaging(0.969) TCGA-AO-A128-01 17 7346372 7346372 T G FGF11 Intron 0.14 TCGA-AO-A128-01 17 73808228 73808228 A C UNK Missense_Mutation p.E117A 0.11 deleterious(0) benign(0.111) TCGA-AO-A128-01 17 7412272 7412272 T C POLR2A Missense_Mutation p.C1159R 0.27 benign(0.316) TCGA-AO-A128-01 17 74472912 74472912 C T RHBDF2 Missense_Mutation p.R401Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.29 TCGA-AO-A128-01 17 76425269 76425269 G A DNAH17 Missense_Mutation p.T4107M 0.22 benign(0.002) TCGA-AO-A128-01 17 76487614 76487614 T C DNAH17 Missense_Mutation p.T2180A 0.14 benign(0.009) TCGA-AO-A128-01 17 76989897 76989897 C T CANT1 Missense_Mutation p.R314H 0.16 tolerated(0.78) benign(0.004) TCGA-AO-A128-01 17 7733997 7733997 C A DNAH2 Missense_Mutation p.L4023I 0.15 benign(0.26) TCGA-AO-A128-01 17 77808911 77808911 T C CBX4 Missense_Mutation p.H177R 0.15 tolerated(0.23) probably_damaging(0.966) TCGA-AO-A128-01 17 7788214 7788214 G C CHD3 Missense_Mutation p.E30D 0.18 unknown(0) TCGA-AO-A128-01 17 78059842 78059842 T C CCDC40 Missense_Mutation p.L759P 0.14 deleterious(0.03) possibly_damaging(0.506) TCGA-AO-A128-01 17 78083794 78083794 C T GAA Silent p.D459D 0.23 TCGA-AO-A128-01 17 78195592 78195592 A G SLC26A11 Missense_Mutation p.Q78R 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-AO-A128-01 17 78320640 78320640 G A RNF213 Silent p.Q2835Q 0.12 TCGA-AO-A128-01 17 78796975 78796975 C T RPTOR Missense_Mutation p.T363I 0.18 deleterious(0) benign(0.355) TCGA-AO-A128-01 17 79139397 79139397 C - AATK Intron 0.09 TCGA-AO-A128-01 17 79207463 79207463 C T ENTHD2 Silent p.Q143Q 0.09 TCGA-AO-A128-01 17 79639648 79639648 T C CCDC137 Missense_Mutation p.Y262H 0.14 deleterious(0) probably_damaging(0.998) TCGA-AO-A128-01 17 79684040 79684040 A G SLC25A10 Missense_Mutation p.R158G 0.04 tolerated(0.26) benign(0.002) TCGA-AO-A128-01 17 79967367 79967367 G A ASPSCR1 Missense_Mutation p.R365H 0.28 tolerated(0.05) probably_damaging(0.92) TCGA-AO-A128-01 17 8273418 8273418 C A KRBA2 Missense_Mutation p.E171D 0.27 tolerated(0.08) probably_damaging(0.951) TCGA-AO-A128-01 18 14478662 14478662 T - CXADRP3 RNA 0.12 TCGA-AO-A128-01 18 21134739 21134739 G A NPC1 Silent p.H512H 0.11 TCGA-AO-A128-01 18 21427492 21427492 G A LAMA3 Silent p.T1332T 0.09 TCGA-AO-A128-01 18 29054321 29054321 C T DSG3 Missense_Mutation p.A780V 0.16 tolerated(0.18) benign(0.088) TCGA-AO-A128-01 18 29454479 29454479 C A TRAPPC8 Missense_Mutation p.Q639H 0.08 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 18 34298455 34298455 A G FHOD3 Missense_Mutation p.Q890R 0.15 tolerated(0.35) probably_damaging(0.921) TCGA-AO-A128-01 18 34324133 34324133 G A FHOD3 Missense_Mutation p.G1165R 0.17 deleterious(0) possibly_damaging(0.815) TCGA-AO-A128-01 18 43319182 43319182 T C SLC14A1 Missense_Mutation p.W296R 0.13 deleterious(0) probably_damaging(0.953) TCGA-AO-A128-01 18 44140494 44140494 G A LOXHD1 5'Flank 0.16 TCGA-AO-A128-01 18 44774845 44774845 C T SKOR2 Missense_Mutation p.G237D 0.13 probably_damaging(0.994) TCGA-AO-A128-01 18 67992730 67992730 G A SOCS6 Missense_Mutation p.A276T 0.17 tolerated_low_confidence(0.36) benign(0.012) TCGA-AO-A128-01 18 71930610 71930610 T G CYB5A Missense_Mutation p.T78P 0.13 tolerated(0.05) possibly_damaging(0.497) TCGA-AO-A128-01 18 73000322 73000322 G C TSHZ1 Missense_Mutation p.S942T 0.15 tolerated(0.16) benign(0.007) TCGA-AO-A128-01 18 9525818 9525818 T C RALBP1 Missense_Mutation p.L439P 0.15 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 19 1005498 1005498 C T GRIN3B Silent p.A666A 0.13 TCGA-AO-A128-01 19 10225242 10225246 CTCTA - PPAN-P2RY11 Frame_Shift_Del p.L740Hfs*42 0.33 TCGA-AO-A128-01 19 10463747 10463747 A G TYK2 Missense_Mutation p.Y1019H 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-AO-A128-01 19 1073549 1073549 G A HMHA1 Missense_Mutation p.E220K 0.21 deleterious(0.03) possibly_damaging(0.631) TCGA-AO-A128-01 19 10794733 10794733 C T ILF3 Intron 0.10 TCGA-AO-A128-01 19 11134234 11134234 G A SMARCA4 Missense_Mutation p.R967H 0.13 probably_damaging(1) TCGA-AO-A128-01 19 11446375 11446375 C T RAB3D Missense_Mutation p.A105T 0.13 tolerated(1) benign(0.001) TCGA-AO-A128-01 19 11472007 11472007 T C DKFZP761J1410 Missense_Mutation p.L144P 0.14 deleterious(0.03) possibly_damaging(0.779) TCGA-AO-A128-01 19 11569311 11569311 C T ELAVL3 Missense_Mutation p.R150H 0.13 deleterious(0.04) benign(0.043) TCGA-AO-A128-01 19 1234254 1234254 G A C19orf26 Missense_Mutation p.A235V 0.21 tolerated(1) benign(0.003) TCGA-AO-A128-01 19 12866252 12866252 A G BEST2 Silent p.V232V 0.12 TCGA-AO-A128-01 19 12878650 12878650 G A HOOK2 Missense_Mutation p.P428L 0.34 deleterious(0.02) benign(0.166) TCGA-AO-A128-01 19 12995616 12995616 C T KLF1 3'UTR 0.30 TCGA-AO-A128-01 19 13910714 13910714 G A ZSWIM4 Missense_Mutation p.V112M 0.14 deleterious(0) probably_damaging(0.938) TCGA-AO-A128-01 19 14074749 14074749 G A RFX1 Missense_Mutation p.A761V 0.27 deleterious(0) probably_damaging(0.926) TCGA-AO-A128-01 19 14231277 14231277 G A ASF1B Silent p.C201C 0.15 TCGA-AO-A128-01 19 14268711 14268711 T C LPHN1 Missense_Mutation p.M845V 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-AO-A128-01 19 14273713 14273713 C T LPHN1 Silent p.T305T 0.10 TCGA-AO-A128-01 19 14519849 14519849 T G DDX39A Missense_Mutation p.I423L 0.13 tolerated(0.21) benign(0.004) TCGA-AO-A128-01 19 1460266 1460266 C A APC2 Missense_Mutation p.R464S 0.26 probably_damaging(1) TCGA-AO-A128-01 19 14805938 14805938 C A ZNF333 Silent p.A40A 0.13 TCGA-AO-A128-01 19 15791295 15791295 T C CYP4F12 Missense_Mutation p.I164T 0.11 deleterious(0.03) benign(0.042) TCGA-AO-A128-01 19 16060449 16060449 G A OR10H4 Missense_Mutation p.G211D 0.27 tolerated(0.09) probably_damaging(0.928) TCGA-AO-A128-01 19 16222607 16222607 G A RAB8A 5'UTR 0.10 TCGA-AO-A128-01 19 16617587 16617587 T C C19orf44 Splice_Site p.X383_splice 0.15 TCGA-AO-A128-01 19 17362491 17362491 G A USHBP1 Silent p.L608L 0.09 TCGA-AO-A128-01 19 17373491 17373491 C T USHBP1 Missense_Mutation p.R171Q 0.10 tolerated(0.39) benign(0.007) TCGA-AO-A128-01 19 17767000 17767000 C A UNC13A Missense_Mutation p.E325D 0.13 tolerated_low_confidence(0.49) benign(0) TCGA-AO-A128-01 19 1805889 1805889 G A ATP8B3 Silent p.D273D 0.08 TCGA-AO-A128-01 19 18375996 18375996 C T KIAA1683 Missense_Mutation p.C785Y 0.10 tolerated(0.07) probably_damaging(0.917) TCGA-AO-A128-01 19 18729214 18729214 C A TMEM59L Missense_Mutation p.A271D 0.10 deleterious(0) probably_damaging(0.968) TCGA-AO-A128-01 19 19166169 19166169 C T ARMC6 Silent p.I373I 0.14 TCGA-AO-A128-01 19 19369471 19369471 G T HAPLN4 Silent p.P226P 0.17 TCGA-AO-A128-01 19 19388608 19388608 C G SUGP1 Missense_Mutation p.K572N 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 19 2121063 2121063 G A AP3D1 Missense_Mutation p.R427W 0.27 deleterious(0) probably_damaging(0.931) TCGA-AO-A128-01 19 2202709 2202709 G A DOT1L Missense_Mutation p.V240M 0.20 deleterious(0) probably_damaging(0.994) TCGA-AO-A128-01 19 2216367 2216367 C T DOT1L Silent p.L671L 0.23 TCGA-AO-A128-01 19 2933700 2933700 G A ZNF77 Silent p.H475H 0.24 TCGA-AO-A128-01 19 2933847 2933847 G A ZNF77 Silent p.H426H 0.17 TCGA-AO-A128-01 19 306631 306631 C T MIER2 3'UTR 0.22 TCGA-AO-A128-01 19 30934485 30934485 C A ZNF536 Missense_Mutation p.L6M 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AO-A128-01 19 3113394 3113394 A G GNA11 Missense_Mutation p.S130G 0.07 tolerated(0.23) benign(0.003) TCGA-AO-A128-01 19 33655137 33655137 G A WDR88 Missense_Mutation p.S372N 0.17 deleterious(0) probably_damaging(0.998) TCGA-AO-A128-01 19 35232519 35232519 G C ZNF181 Silent p.L411L 0.13 TCGA-AO-A128-01 19 35232522 35232522 A G ZNF181 Silent p.K412K 0.14 TCGA-AO-A128-01 19 35793353 35793353 G A MAG Missense_Mutation p.A325T 0.12 tolerated(0.06) probably_damaging(0.962) TCGA-AO-A128-01 19 3594821 3594821 C - TBXA2R 3'UTR 0.12 TCGA-AO-A128-01 19 3619104 3619104 T C CACTIN Missense_Mutation p.M341V 0.13 deleterious(0.01) benign(0.168) TCGA-AO-A128-01 19 36357320 36357320 G C KIRREL2 Missense_Mutation p.A685P 0.11 deleterious(0.03) benign(0.265) TCGA-AO-A128-01 19 36595478 36595478 T C WDR62 Silent p.V1404V 0.16 TCGA-AO-A128-01 19 37211028 37211028 C G ZNF567 Missense_Mutation p.Q437E 0.26 deleterious(0) probably_damaging(0.942) TCGA-AO-A128-01 19 37211190 37211190 C G ZNF567 Missense_Mutation p.L491V 0.15 tolerated(0.18) probably_damaging(0.997) TCGA-AO-A128-01 19 3778300 3778300 G A MATK Missense_Mutation p.P470S 0.29 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 19 38103537 38103537 A G ZNF540 Silent p.S452S 0.08 TCGA-AO-A128-01 19 38126429 38126429 C T ZFP30 Missense_Mutation p.R338Q 0.16 tolerated(0.33) probably_damaging(0.982) TCGA-AO-A128-01 19 38383936 38383936 A G WDR87 Missense_Mutation p.Y764H 0.12 probably_damaging(0.999) TCGA-AO-A128-01 19 38798373 38798373 C A YIF1B Missense_Mutation p.G187W 0.09 deleterious(0) possibly_damaging(0.82) TCGA-AO-A128-01 19 38858384 38858384 C T CATSPERG Silent p.D966D 0.09 TCGA-AO-A128-01 19 38954467 38954467 G A RYR1 Silent p.L921L 0.28 TCGA-AO-A128-01 19 38954484 38954484 C T RYR1 Missense_Mutation p.T927M 0.08 probably_damaging(0.996) TCGA-AO-A128-01 19 39228951 39228951 G A CAPN12 Silent p.R309R 0.07 TCGA-AO-A128-01 19 39281404 39281404 G A LGALS7B Silent p.T57T 0.08 TCGA-AO-A128-01 19 39826172 39826172 C T GMFG Splice_Site p.X2_splice 0.11 TCGA-AO-A128-01 19 39868233 39868233 A G SAMD4B Missense_Mutation p.T405A 0.10 tolerated(0.75) benign(0.002) TCGA-AO-A128-01 19 39877359 39877359 A G PAF1 Missense_Mutation p.M356T 0.20 tolerated(0.11) benign(0.18) TCGA-AO-A128-01 19 39914677 39914677 T G PLEKHG2 Silent p.A968A 0.13 TCGA-AO-A128-01 19 39971352 39971352 C A TIMM50 Silent p.A56A 0.16 TCGA-AO-A128-01 19 39995902 39995902 C T DLL3 Missense_Mutation p.R302C 0.33 deleterious(0) probably_damaging(0.996) TCGA-AO-A128-01 19 40504301 40504301 A G ZNF546 Missense_Mutation p.H23R 0.07 tolerated_low_confidence(0.39) benign(0.002) TCGA-AO-A128-01 19 4055153 4055153 C T ZBTB7A Silent p.E26E 0.12 TCGA-AO-A128-01 19 40901385 40901385 C A PRX Missense_Mutation p.K958N 0.07 deleterious(0) possibly_damaging(0.607) TCGA-AO-A128-01 19 41008142 41008142 G A SPTBN4 Silent p.Q335Q 0.07 TCGA-AO-A128-01 19 41123050 41123050 G A LTBP4 Missense_Mutation p.V1064M 0.07 tolerated(0.22) benign(0.062) TCGA-AO-A128-01 19 44039689 44039689 C T ZNF575 Silent p.R196R 0.16 TCGA-AO-A128-01 19 44223375 44223375 G A IRGC Missense_Mutation p.R222H 0.13 tolerated(0.08) benign(0.184) TCGA-AO-A128-01 19 44237094 44237094 T C SMG9 Missense_Mutation p.Q467R 0.11 tolerated(0.31) benign(0.016) TCGA-AO-A128-01 19 44792637 44792637 T - ZNF235 Frame_Shift_Del p.K317Nfs*154 0.17 TCGA-AO-A128-01 19 44832281 44832281 G T ZNF112 Missense_Mutation p.H683N 0.30 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 19 45889119 45889119 C T PPP1R13L Missense_Mutation p.A682T 0.11 tolerated(0.39) benign(0.429) TCGA-AO-A128-01 19 46027859 46027859 G A VASP Missense_Mutation p.E330K 0.05 tolerated(0.27) possibly_damaging(0.614) TCGA-AO-A128-01 19 46094966 46094966 G A GPR4 Silent p.G53G 0.34 TCGA-AO-A128-01 19 46191653 46191653 G T SNRPD2 Silent p.A58A 0.11 TCGA-AO-A128-01 19 47236389 47236389 G A STRN4 Missense_Mutation p.P215L 0.13 tolerated(0.08) benign(0.123) TCGA-AO-A128-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.06 unknown(0) TCGA-AO-A128-01 19 4816955 4816955 G A TICAM1 Nonsense_Mutation p.R479* 0.15 TCGA-AO-A128-01 19 48814878 48814878 G A CCDC114 Missense_Mutation p.R140W 0.34 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 19 48917792 48917792 T C GRIN2D Missense_Mutation p.C455R 0.10 deleterious(0) possibly_damaging(0.641) TCGA-AO-A128-01 19 50027779 50027779 G A FCGRT Missense_Mutation p.R206H 0.16 tolerated(0.68) probably_damaging(0.997) TCGA-AO-A128-01 19 50139933 50139933 G A RRAS Silent p.R132R 0.36 TCGA-AO-A128-01 19 50752377 50752377 C T MYH14 Missense_Mutation p.A488V 0.11 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 19 50978672 50978672 C A FAM71E1 Missense_Mutation p.G134V 0.08 deleterious(0) probably_damaging(0.991) TCGA-AO-A128-01 19 51207712 51207712 G C SHANK1 Missense_Mutation p.N379K 0.11 possibly_damaging(0.849) TCGA-AO-A128-01 19 51446828 51446828 A C KLK5 3'UTR 0.11 TCGA-AO-A128-01 19 51883474 51883474 C T LIM2 Missense_Mutation p.R210H 0.38 deleterious(0.04) probably_damaging(1) TCGA-AO-A128-01 19 52496873 52496874 AT - ZNF615 Frame_Shift_Del p.I496Mfs*3 0.21 TCGA-AO-A128-01 19 52693367 52693367 C T PPP2R1A Silent p.G6G 0.11 TCGA-AO-A128-01 19 53087139 53087139 T C ZNF701 3'UTR 0.08 TCGA-AO-A128-01 19 53667689 53667689 C T ZNF665 3'UTR 0.32 TCGA-AO-A128-01 19 53885896 53885896 C A ZNF525 3'UTR 0.12 TCGA-AO-A128-01 19 5455986 5455986 C T ZNRF4 Missense_Mutation p.R162C 0.29 deleterious(0) probably_damaging(0.991) TCGA-AO-A128-01 19 54875909 54875909 C T LAIR1 Silent p.T21T 0.25 TCGA-AO-A128-01 19 54969606 54969606 C T LENG8 Missense_Mutation p.R716W 0.11 deleterious(0) possibly_damaging(0.785) TCGA-AO-A128-01 19 55048160 55048160 T C KIR3DX1 Missense_Mutation p.F243L 0.12 tolerated(0.69) benign(0.086) TCGA-AO-A128-01 19 55481596 55481596 G C NLRP2 Silent p.A71A 0.09 TCGA-AO-A128-01 19 55481617 55481617 G C NLRP2 Missense_Mutation p.K78N 0.07 deleterious(0.03) probably_damaging(0.918) TCGA-AO-A128-01 19 55526431 55526431 C T GP6 Silent p.Q294Q 0.09 TCGA-AO-A128-01 19 55610400 55610400 G A PPP1R12C Silent p.H265H 0.13 TCGA-AO-A128-01 19 55889413 55889413 G A TMEM190 Missense_Mutation p.V126I 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.636) TCGA-AO-A128-01 19 55995297 55995297 G A ZNF628 Missense_Mutation p.E913K 0.24 tolerated(0.1) unknown(0) TCGA-AO-A128-01 19 56002324 56002324 G T SSC5D Missense_Mutation p.G258W 0.09 probably_damaging(1) TCGA-AO-A128-01 19 56274474 56274474 T C RFPL4A Missense_Mutation p.I266T 0.08 tolerated(0.23) benign(0.061) TCGA-AO-A128-01 19 56735107 56735107 C T ZSCAN5A Missense_Mutation p.V161M 0.08 tolerated(0.13) benign(0.007) TCGA-AO-A128-01 19 56736149 56736149 C T ZSCAN5A Missense_Mutation p.M89I 0.10 deleterious(0.02) probably_damaging(0.989) TCGA-AO-A128-01 19 57133465 57133465 C T ZNF71 Silent p.Y270Y 0.18 TCGA-AO-A128-01 19 57765022 57765022 C T ZNF805 Missense_Mutation p.R279W 0.30 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 19 57954903 57954903 G T ZNF749 Missense_Mutation p.K129N 0.08 tolerated(0.06) possibly_damaging(0.788) TCGA-AO-A128-01 19 58187744 58187744 G A ZSCAN4 Silent p.K77K 0.10 TCGA-AO-A128-01 19 58485513 58485513 A G C19orf18 Silent p.H60H 0.12 TCGA-AO-A128-01 19 59023092 59023092 T C SLC27A5 Silent p.P77P 0.26 TCGA-AO-A128-01 19 59059251 59059251 G A TRIM28 Missense_Mutation p.R311H 0.10 tolerated(0.1) possibly_damaging(0.613) TCGA-AO-A128-01 19 6422382 6422382 A C KHSRP Missense_Mutation p.F105L 0.24 tolerated(0.07) benign(0.004) TCGA-AO-A128-01 19 6751056 6751056 C - TRIP10 Intron 0.28 TCGA-AO-A128-01 19 7594494 7594494 C T MCOLN1 Missense_Mutation p.R419W 0.24 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 19 7977201 7977201 G A MAP2K7 Missense_Mutation p.R382H 0.10 tolerated(0.11) benign(0.022) TCGA-AO-A128-01 19 808430 808430 G A PTBP1 Silent p.A408A 0.18 TCGA-AO-A128-01 19 814532 814532 C T LPPR3 Missense_Mutation p.A273T 0.20 deleterious(0) probably_damaging(0.988) TCGA-AO-A128-01 19 8575617 8575617 C T ZNF414 Silent p.P377P 0.14 TCGA-AO-A128-01 19 9028274 9028274 A G MUC16 Missense_Mutation p.I12173T 0.10 benign(0.095) TCGA-AO-A128-01 1 109756599 109756599 C T SARS 5'UTR 0.15 TCGA-AO-A128-01 1 11007947 11007947 C - C1orf127 Frame_Shift_Del p.V749Lfs*13 0.21 TCGA-AO-A128-01 1 110458304 110458304 G C CSF1 Missense_Mutation p.D71H 0.12 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 1 110465849 110465849 G A CSF1 Silent p.P202P 0.21 TCGA-AO-A128-01 1 113059818 113059818 C T WNT2B Missense_Mutation p.R253C 0.12 deleterious(0.01) possibly_damaging(0.601) TCGA-AO-A128-01 1 113237413 113237413 G T MOV10 Missense_Mutation p.Q505H 0.06 tolerated(0.07) benign(0.119) TCGA-AO-A128-01 1 114969881 114969881 C T TRIM33 Silent p.R446R 0.24 TCGA-AO-A128-01 1 115221038 115221038 C T AMPD1 Silent p.E369E 0.12 TCGA-AO-A128-01 1 115256541 115256541 T G NRAS Missense_Mutation p.D57A 0.15 deleterious(0) benign(0.101) TCGA-AO-A128-01 1 115829324 115829324 G A NGF Silent p.T31T 0.07 TCGA-AO-A128-01 1 1158710 1158710 A G SDF4 Missense_Mutation p.V164A 0.14 tolerated(0.09) benign(0.084) TCGA-AO-A128-01 1 117131360 117131360 G A IGSF3 Missense_Mutation p.A819V 0.11 deleterious(0.01) probably_damaging(0.948) TCGA-AO-A128-01 1 117509637 117509637 C T PTGFRN Missense_Mutation p.R582C 0.21 deleterious(0.04) probably_damaging(1) TCGA-AO-A128-01 1 117634491 117634491 A G TTF2 Silent p.S908S 0.20 TCGA-AO-A128-01 1 11854495 11854495 C T MTHFR Missense_Mutation p.E423K 0.13 tolerated(0.28) benign(0.005) TCGA-AO-A128-01 1 11889363 11889363 A G CLCN6 Missense_Mutation p.D411G 0.15 tolerated(0.48) benign(0) TCGA-AO-A128-01 1 119466144 119466144 T G TBX15 Missense_Mutation p.K153T 0.13 tolerated(0.11) benign(0.089) TCGA-AO-A128-01 1 119575843 119575843 G A WARS2 Silent p.F258F 0.06 TCGA-AO-A128-01 1 120165810 120165810 A G ZNF697 Missense_Mutation p.C386R 0.11 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 1 12064574 12064574 T C MFN2 Silent p.T432T 0.15 TCGA-AO-A128-01 1 1222496 1222496 G A SCNN1D Missense_Mutation p.S376N 0.14 tolerated(0.15) probably_damaging(0.94) TCGA-AO-A128-01 1 12309333 12309333 C A VPS13D Silent p.S167S 0.18 TCGA-AO-A128-01 1 12343611 12343611 G A VPS13D Missense_Mutation p.D1818N 0.15 possibly_damaging(0.464) TCGA-AO-A128-01 1 1267243 1267243 G A TAS1R3 Silent p.L139L 0.24 TCGA-AO-A128-01 1 145650498 145650498 C T RNF115 Silent p.G59G 0.22 TCGA-AO-A128-01 1 1469367 1469367 A G ATAD3A Missense_Mutation p.Q607R 0.12 tolerated(0.46) benign(0.002) TCGA-AO-A128-01 1 149759939 149759939 G A FCGR1A Missense_Mutation p.V109I 0.11 tolerated(0.07) benign(0.023) TCGA-AO-A128-01 1 149871605 149871605 C T BOLA1 5'UTR 0.14 TCGA-AO-A128-01 1 150788876 150788876 A G ARNT Silent p.S603S 0.10 TCGA-AO-A128-01 1 150900391 150900391 G T SETDB1 Missense_Mutation p.W67C 0.08 tolerated_low_confidence(0.32) benign(0.002) TCGA-AO-A128-01 1 150967111 150967111 A G ANXA9 Missense_Mutation p.D304G 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-AO-A128-01 1 151259014 151259014 A G ZNF687 Missense_Mutation p.S83G 0.08 deleterious(0) probably_damaging(0.993) TCGA-AO-A128-01 1 153362511 153362511 G T S100A8 3'UTR 0.21 TCGA-AO-A128-01 1 153912082 153912082 T C DENND4B Missense_Mutation p.N601S 0.10 tolerated(1) benign(0.378) TCGA-AO-A128-01 1 153924498 153924498 T C CRTC2 Silent p.A331A 0.10 TCGA-AO-A128-01 1 154125327 154125327 T C NUP210L Silent p.A75A 0.18 TCGA-AO-A128-01 1 154543683 154543683 G T CHRNB2 Missense_Mutation p.E128D 0.14 tolerated(0.15) benign(0.262) TCGA-AO-A128-01 1 155110169 155110169 A C SLC50A1 Missense_Mutation p.S139R 0.06 deleterious(0.03) possibly_damaging(0.888) TCGA-AO-A128-01 1 155148580 155148580 A G TRIM46 Missense_Mutation p.E181G 0.11 deleterious(0) possibly_damaging(0.619) TCGA-AO-A128-01 1 155753797 155753797 A G GON4L Silent p.F624F 0.12 TCGA-AO-A128-01 1 155792149 155792149 C T GON4L Missense_Mutation p.M272I 0.10 tolerated(0.2) benign(0) TCGA-AO-A128-01 1 155920658 155920658 C T ARHGEF2 Missense_Mutation p.A889T 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.774) TCGA-AO-A128-01 1 156047130 156047130 G A MEX3A Silent p.P266P 0.32 TCGA-AO-A128-01 1 156702121 156702121 G A RRNAD1 Silent p.A95A 0.10 TCGA-AO-A128-01 1 156703206 156703206 T C RRNAD1 Missense_Mutation p.L177S 0.25 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 1 156777006 156777006 T G SH2D2A Missense_Mutation p.R388S 0.09 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-AO-A128-01 1 156908247 156908247 A C ARHGEF11 Silent p.P1385P 0.12 TCGA-AO-A128-01 1 156928929 156928929 G A ARHGEF11 Missense_Mutation p.R430C 0.06 deleterious(0.01) possibly_damaging(0.905) TCGA-AO-A128-01 1 157069310 157069310 G T ETV3L Missense_Mutation p.H2Q 0.09 tolerated(0.14) benign(0.011) TCGA-AO-A128-01 1 157095727 157095727 G A ETV3 Missense_Mutation p.R149W 0.15 deleterious(0.01) benign(0.28) TCGA-AO-A128-01 1 158064133 158064133 G A KIRREL Missense_Mutation p.D584N 0.10 tolerated(0.13) benign(0.424) TCGA-AO-A128-01 1 159166177 159166177 C T CADM3 Missense_Mutation p.P273S 0.10 tolerated(0.15) benign(0.131) TCGA-AO-A128-01 1 160064773 160064773 C T IGSF8 Missense_Mutation p.V110M 0.09 deleterious(0.03) benign(0.11) TCGA-AO-A128-01 1 160275509 160275509 G A COPA Silent p.D499D 0.12 TCGA-AO-A128-01 1 16074093 16074093 C T TMEM82 Missense_Mutation p.S333L 0.08 deleterious(0.05) unknown(0) TCGA-AO-A128-01 1 16091623 16091623 A G FBLIM1 Missense_Mutation p.M49V 0.13 tolerated(0.31) benign(0.001) TCGA-AO-A128-01 1 161087806 161087806 T C PFDN2 Missense_Mutation p.N4S 0.13 tolerated_low_confidence(0.23) unknown(0) TCGA-AO-A128-01 1 161201001 161201002 - A NR1I3 Frame_Shift_Ins p.L243Ffs*20 0.15 TCGA-AO-A128-01 1 161600157 161600157 C T FCGR3B Splice_Site p.X57_splice 0.14 TCGA-AO-A128-01 1 162773289 162773289 G A HSD17B7 Silent p.P237P 0.24 TCGA-AO-A128-01 1 16727090 16727090 G A SPATA21 Intron 0.15 TCGA-AO-A128-01 1 169586538 169586538 A G SELP Missense_Mutation p.I70T 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 1 171544266 171544266 A G PRRC2C Silent p.S2316S 0.13 TCGA-AO-A128-01 1 171621548 171621548 C T MYOC Missense_Mutation p.M68I 0.07 tolerated(0.12) benign(0.033) TCGA-AO-A128-01 1 173552700 173552700 T C SLC9C2 Silent p.A195A 0.24 TCGA-AO-A128-01 1 173839518 173839518 C T ZBTB37 Missense_Mutation p.A52V 0.07 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 1 1747243 1747243 C T GNB1 Missense_Mutation p.R52Q 0.11 deleterious(0.02) possibly_damaging(0.78) TCGA-AO-A128-01 1 178834638 178834638 G A ANGPTL1 Missense_Mutation p.L92F 0.06 deleterious(0.02) probably_damaging(0.964) TCGA-AO-A128-01 1 179054887 179054887 C T TOR3A Silent p.H166H 0.15 TCGA-AO-A128-01 1 186008972 186008972 A C HMCN1 Missense_Mutation p.K2047N 0.08 probably_damaging(0.997) TCGA-AO-A128-01 1 186644409 186644409 C T PTGS2 Silent p.K459K 0.16 TCGA-AO-A128-01 1 186648284 186648284 T A PTGS2 Silent p.T73T 0.10 TCGA-AO-A128-01 1 1922390 1922390 C A C1orf222 Missense_Mutation p.E2D 0.17 tolerated(0.08) unknown(0) TCGA-AO-A128-01 1 19644224 19644224 C A PQLC2 Missense_Mutation p.S18Y 0.19 deleterious(0) possibly_damaging(0.765) TCGA-AO-A128-01 1 196799650 196799650 C T CFHR1 Missense_Mutation p.P210S 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-AO-A128-01 1 196971781 196971781 A G CFHR5 Silent p.L439L 0.24 TCGA-AO-A128-01 1 198687310 198687310 G A PTPRC Missense_Mutation p.G513D 0.08 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 1 200376086 200376086 T G ZNF281 3'UTR 0.20 TCGA-AO-A128-01 1 200378119 200378119 C T ZNF281 Missense_Mutation p.A239T 0.16 tolerated(0.55) benign(0.142) TCGA-AO-A128-01 1 200539060 200539060 A G KIF14 Silent p.L1214L 0.09 TCGA-AO-A128-01 1 201168764 201168764 G A IGFN1 Missense_Mutation p.R147Q 0.09 benign(0.017) TCGA-AO-A128-01 1 201185644 201185644 C A IGFN1 Missense_Mutation p.L3120I 0.11 probably_damaging(0.919) TCGA-AO-A128-01 1 202126929 202126929 C T PTPN7 Missense_Mutation p.S215N 0.08 tolerated(0.33) benign(0) TCGA-AO-A128-01 1 204092806 204092806 G A SOX13 Missense_Mutation p.E417K 0.12 deleterious(0) possibly_damaging(0.506) TCGA-AO-A128-01 1 204226556 204226556 C T PLEKHA6 Silent p.R483R 0.06 TCGA-AO-A128-01 1 204587556 204587556 C G LRRN2 Missense_Mutation p.G522A 0.22 tolerated(0.73) benign(0.024) TCGA-AO-A128-01 1 205275403 205275403 A C NUAK2 Missense_Mutation p.H201Q 0.10 tolerated(0.72) benign(0.005) TCGA-AO-A128-01 1 205548900 205548900 C A MFSD4 Silent p.A84A 0.10 TCGA-AO-A128-01 1 206225058 206225058 T C AVPR1B Silent p.A206A 0.10 TCGA-AO-A128-01 1 206230817 206230817 A G AVPR1B Missense_Mutation p.N317S 0.07 deleterious(0.02) benign(0.153) TCGA-AO-A128-01 1 206619505 206619505 G T SRGAP2 Missense_Mutation p.E567D 0.08 tolerated(1) benign(0.008) TCGA-AO-A128-01 1 206821385 206821385 G A DYRK3 Missense_Mutation p.R281Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 1 206821652 206821652 T C DYRK3 Missense_Mutation p.I370T 0.11 deleterious(0) probably_damaging(0.998) TCGA-AO-A128-01 1 206904484 206904484 C T MAPKAPK2 Silent p.L257L 0.09 TCGA-AO-A128-01 1 207222861 207222861 C A YOD1 Missense_Mutation p.R184L 0.30 tolerated(0.06) benign(0.087) TCGA-AO-A128-01 1 208212197 208212197 G A PLXNA2 Missense_Mutation p.R1545W 0.13 deleterious(0) probably_damaging(0.993) TCGA-AO-A128-01 1 209776626 209776626 A G CAMK1G Missense_Mutation p.M97V 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-AO-A128-01 1 211749346 211749346 G A SLC30A1 Missense_Mutation p.A303V 0.07 tolerated(0.3) benign(0.016) TCGA-AO-A128-01 1 213178562 213178562 C A ANGEL2 Missense_Mutation p.R316M 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-AO-A128-01 1 22155960 22155960 C T HSPG2 Missense_Mutation p.G3970R 0.10 possibly_damaging(0.597) TCGA-AO-A128-01 1 223283984 223283984 T C TLR5 Missense_Mutation p.Q797R 0.13 deleterious(0.04) benign(0.119) TCGA-AO-A128-01 1 223286290 223286290 G A TLR5 Silent p.G28G 0.10 TCGA-AO-A128-01 1 224492453 224492453 A G NVL Silent p.N270N 0.15 TCGA-AO-A128-01 1 227968417 227968417 G A SNAP47 3'UTR 0.07 TCGA-AO-A128-01 1 228295776 228295776 G T MRPL55 Silent p.A12A 0.17 TCGA-AO-A128-01 1 22832666 22832666 C T ZBTB40 Missense_Mutation p.T431M 0.20 tolerated(0.15) unknown(0) TCGA-AO-A128-01 1 228362453 228362453 C T IBA57 Silent p.G134G 0.41 TCGA-AO-A128-01 1 228400246 228400246 C T OBSCN Silent p.H254H 0.29 TCGA-AO-A128-01 1 228475944 228475944 C A OBSCN Missense_Mutation p.R3761S 0.10 benign(0.411) TCGA-AO-A128-01 1 228602521 228602521 C T TRIM17 Missense_Mutation p.E85K 0.33 deleterious(0) probably_damaging(0.996) TCGA-AO-A128-01 1 235872544 235872544 C T LYST Silent p.A3330A 0.28 TCGA-AO-A128-01 1 235967816 235967816 A G LYST Silent p.A1181A 0.17 TCGA-AO-A128-01 1 236912433 236912433 A T ACTN2 Nonsense_Mutation p.K509* 0.16 TCGA-AO-A128-01 1 242042124 242042124 G A EXO1 Missense_Mutation p.V530I 0.09 tolerated(0.18) benign(0.018) TCGA-AO-A128-01 1 247607376 247607376 C T NLRP3 Silent p.L924L 0.09 TCGA-AO-A128-01 1 26149547 26149547 G A MTFR1L 5'UTR 0.22 TCGA-AO-A128-01 1 26161810 26161810 A G AUNIP Missense_Mutation p.Y250H 0.10 tolerated(0.28) probably_damaging(0.934) TCGA-AO-A128-01 1 26612397 26612397 C T UBXN11 Missense_Mutation p.E231K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A128-01 1 27121694 27121694 T C PIGV Missense_Mutation p.L390P 0.07 deleterious(0) probably_damaging(0.961) TCGA-AO-A128-01 1 27942257 27942257 T C FGR Missense_Mutation p.S261G 0.12 deleterious(0.03) benign(0.002) TCGA-AO-A128-01 1 28858719 28858719 G T RCC1 Nonsense_Mutation p.G131* 0.16 TCGA-AO-A128-01 1 29649886 29649886 T C PTPRU Missense_Mutation p.C1288R 0.11 deleterious(0.03) probably_damaging(1) TCGA-AO-A128-01 1 35477589 35477589 G T ZMYM6 Missense_Mutation p.H322N 0.14 tolerated_low_confidence(0.25) benign(0.44) TCGA-AO-A128-01 1 35851068 35851068 C T ZMYM4 Missense_Mutation p.A532V 0.30 tolerated(0.08) benign(0.018) TCGA-AO-A128-01 1 36028949 36028949 C A NCDN Missense_Mutation p.P511H 0.06 tolerated(0.42) possibly_damaging(0.62) TCGA-AO-A128-01 1 37949204 37949204 A G ZC3H12A Missense_Mutation p.S598G 0.17 deleterious_low_confidence(0.02) benign(0.014) TCGA-AO-A128-01 1 38411938 38411938 C T INPP5B Missense_Mutation p.E15K 0.19 deleterious(0.01) possibly_damaging(0.541) TCGA-AO-A128-01 1 39723627 39723627 G A MACF1 Missense_Mutation p.R157H 0.05 possibly_damaging(0.719) TCGA-AO-A128-01 1 40131204 40131204 A G NT5C1A Missense_Mutation p.I141T 0.17 deleterious(0) possibly_damaging(0.461) TCGA-AO-A128-01 1 45474182 45474182 G A HECTD3 Intron 0.11 TCGA-AO-A128-01 1 46650544 46650544 A G TSPAN1 Missense_Mutation p.T143A 0.07 deleterious(0) probably_damaging(0.951) TCGA-AO-A128-01 1 46655663 46655663 T G POMGNT1 Splice_Site p.X550_splice 0.23 TCGA-AO-A128-01 1 46879247 46879247 A G FAAH Nonstop_Mutation p.*580Wext*8 0.16 TCGA-AO-A128-01 1 53068166 53068166 A G GPX7 Missense_Mutation p.K29E 0.09 tolerated(1) benign(0.376) TCGA-AO-A128-01 1 53267560 53267560 A G ZYG11B Missense_Mutation p.S519G 0.27 deleterious(0.01) possibly_damaging(0.879) TCGA-AO-A128-01 1 53407525 53407525 G T SCP2 Missense_Mutation p.G43C 0.07 deleterious(0.04) benign(0.211) TCGA-AO-A128-01 1 54513036 54513036 A G TMEM59 Silent p.L67L 0.10 TCGA-AO-A128-01 1 6007234 6007234 C T NPHP4 Missense_Mutation p.G350D 0.15 tolerated(0.59) benign(0.004) TCGA-AO-A128-01 1 6267486 6267486 G A RNF207 Missense_Mutation p.R80Q 0.11 tolerated(0.23) benign(0.024) TCGA-AO-A128-01 1 62910505 62910505 A - USP1 Frame_Shift_Del p.E221Kfs*3 0.22 TCGA-AO-A128-01 1 62960021 62960021 T C DOCK7 Silent p.S1683S 0.10 TCGA-AO-A128-01 1 6504679 6504679 C A ESPN Missense_Mutation p.L377I 0.13 deleterious(0) possibly_damaging(0.606) TCGA-AO-A128-01 1 65139111 65139111 G A CACHD1 Silent p.T846T 0.14 TCGA-AO-A128-01 1 66070842 66070842 T C LEPR Missense_Mutation p.Y509H 0.05 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 1 6615560 6615560 C A TAS1R1 Missense_Mutation p.L43M 0.12 tolerated(0.09) benign(0.141) TCGA-AO-A128-01 1 66999943 66999943 C A SGIP1 5'Flank 0.04 TCGA-AO-A128-01 1 67207080 67207080 G T SGIP1 Missense_Mutation p.G809W 0.11 deleterious(0) possibly_damaging(0.906) TCGA-AO-A128-01 1 67721609 67721609 A T IL23R Missense_Mutation p.Q413L 0.28 deleterious(0.02) possibly_damaging(0.607) TCGA-AO-A128-01 1 70790567 70790567 C T ANKRD13C Silent p.A182A 0.11 TCGA-AO-A128-01 1 76387916 76387916 T - ASB17 Frame_Shift_Del p.N177Tfs*7 0.25 TCGA-AO-A128-01 1 7870637 7870637 C T PER3 Intron 0.08 TCGA-AO-A128-01 1 7879476 7879476 A G PER3 Missense_Mutation p.I544V 0.08 deleterious(0) benign(0.141) TCGA-AO-A128-01 1 84417536 84417536 A G TTLL7 Missense_Mutation p.F50S 0.12 deleterious(0) benign(0.412) TCGA-AO-A128-01 1 86048149 86048149 T C CYR61 Missense_Mutation p.C229R 0.13 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 1 87379772 87379772 G A SEP15 Missense_Mutation p.P5L 0.33 tolerated_low_confidence(0.26) benign(0.003) TCGA-AO-A128-01 1 92224261 92224261 T G TGFBR3 Missense_Mutation p.K98T 0.17 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 1 9416157 9416157 G T SPSB1 Missense_Mutation p.E69D 0.11 tolerated(0.63) benign(0) TCGA-AO-A128-01 1 94576995 94576995 T C ABCA4 Missense_Mutation p.I101V 0.13 tolerated(0.11) benign(0.012) TCGA-AO-A128-01 1 94650971 94650971 C T ARHGAP29 Missense_Mutation p.R616H 0.27 deleterious(0.01) benign(0.091) TCGA-AO-A128-01 20 13894486 13894486 G A SEL1L2 Missense_Mutation p.T164I 0.14 tolerated(0.09) possibly_damaging(0.894) TCGA-AO-A128-01 20 18005359 18005359 A G OVOL2 Missense_Mutation p.L250P 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-AO-A128-01 20 18429694 18429694 A G DZANK1 Missense_Mutation p.V188A 0.08 tolerated(0.11) benign(0.314) TCGA-AO-A128-01 20 1961524 1961524 G T PDYN Silent p.T70T 0.27 TCGA-AO-A128-01 20 20007534 20007534 T C NAA20 Silent p.L92L 0.10 TCGA-AO-A128-01 20 20019010 20019010 G A CRNKL1 Missense_Mutation p.R705W 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-AO-A128-01 20 20493470 20493470 C T RALGAPA2 Missense_Mutation p.E1515K 0.19 deleterious(0.02) benign(0.005) TCGA-AO-A128-01 20 2320545 2320545 C T TGM3 Missense_Mutation p.L616F 0.25 tolerated(0.23) possibly_damaging(0.503) TCGA-AO-A128-01 20 24994688 24994688 G A ACSS1 Missense_Mutation p.A454V 0.21 tolerated(0.07) possibly_damaging(0.864) TCGA-AO-A128-01 20 25194012 25194012 T C ENTPD6 Silent p.P189P 0.08 TCGA-AO-A128-01 20 2779086 2779086 C T CPXM1 Silent p.R146R 0.08 TCGA-AO-A128-01 20 2842330 2842330 C T VPS16 Silent p.G293G 0.12 TCGA-AO-A128-01 20 29993906 29993906 A G DEFB121 Missense_Mutation p.V17A 0.26 tolerated(0.25) possibly_damaging(0.539) TCGA-AO-A128-01 20 30388961 30388961 C T TPX2 3'UTR 0.35 TCGA-AO-A128-01 20 30904402 30904402 T C KIF3B Missense_Mutation p.Y527H 0.09 tolerated(0.07) possibly_damaging(0.795) TCGA-AO-A128-01 20 31573619 31573619 G T SUN5 Missense_Mutation p.L274I 0.13 tolerated(0.89) benign(0.032) TCGA-AO-A128-01 20 31647249 31647249 A G BPIFB3 Missense_Mutation p.Q116R 0.14 tolerated(0.33) probably_damaging(0.996) TCGA-AO-A128-01 20 3214190 3214190 G A SLC4A11 Silent p.F276F 0.16 TCGA-AO-A128-01 20 32333047 32333047 A G ZNF341 Missense_Mutation p.Y94C 0.17 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 20 330451 330451 G A NRSN2 Missense_Mutation p.R55Q 0.13 tolerated(0.67) benign(0.002) TCGA-AO-A128-01 20 33868520 33868520 T C EIF6 Silent p.S102S 0.19 TCGA-AO-A128-01 20 34053953 34053953 A G CEP250 Missense_Mutation p.E139G 0.12 benign(0.109) TCGA-AO-A128-01 20 34563924 34563924 G T CNBD2 Missense_Mutation p.E81D 0.16 tolerated(0.06) benign(0.302) TCGA-AO-A128-01 20 35399443 35399443 C T DSN1 Missense_Mutation p.G63E 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-AO-A128-01 20 35521384 35521384 C T SAMHD1 Missense_Mutation p.R611Q 0.10 tolerated_low_confidence(0.37) benign(0.004) TCGA-AO-A128-01 20 3682158 3682158 G T SIGLEC1 Silent p.A453A 0.11 TCGA-AO-A128-01 20 37209913 37209913 C A ADIG Missense_Mutation p.P7Q 0.13 deleterious(0) possibly_damaging(0.735) TCGA-AO-A128-01 20 39991351 39991351 C T EMILIN3 Silent p.L286L 0.19 TCGA-AO-A128-01 20 43129937 43129937 G A SERINC3 Missense_Mutation p.R354C 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-AO-A128-01 20 44049256 44049256 A G PIGT Missense_Mutation p.D319G 0.14 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 20 44521946 44521946 A G CTSA Missense_Mutation p.N248D 0.11 tolerated(0.69) benign(0.002) TCGA-AO-A128-01 20 44580825 44580825 G A ZNF335 Silent p.P1050P 0.19 TCGA-AO-A128-01 20 46301026 46301026 C T SULF2 Missense_Mutation p.G498R 0.24 tolerated(0.48) benign(0.001) TCGA-AO-A128-01 20 48522305 48522305 A G SPATA2 Missense_Mutation p.C472R 0.19 deleterious(0) probably_damaging(0.996) TCGA-AO-A128-01 20 49575993 49575993 C A MOCS3 Missense_Mutation p.A205D 0.20 deleterious(0) probably_damaging(0.998) TCGA-AO-A128-01 20 49626119 49626119 T G KCNG1 Silent p.R253R 0.16 TCGA-AO-A128-01 20 55028001 55028001 G A CASS4 Missense_Mutation p.R590Q 0.13 tolerated(1) benign(0.002) TCGA-AO-A128-01 20 58645900 58645900 A C C20orf197 Missense_Mutation p.K106N 0.17 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-AO-A128-01 20 60587944 60587944 A G TAF4 Missense_Mutation p.I523T 0.24 benign(0.275) TCGA-AO-A128-01 20 61542562 61542562 G A DIDO1 Nonsense_Mutation p.R135* 0.25 TCGA-AO-A128-01 20 61574909 61574909 G A GID8 Silent p.Q126Q 0.17 TCGA-AO-A128-01 20 62198808 62198808 G A HELZ2 Missense_Mutation p.R635W 0.21 tolerated(0.19) benign(0) TCGA-AO-A128-01 20 62366769 62366769 C T ZGPAT Missense_Mutation p.A437V 0.19 tolerated(0.39) benign(0.004) TCGA-AO-A128-01 20 62494010 62494010 C T ABHD16B Missense_Mutation p.R373C 0.17 deleterious(0.04) probably_damaging(0.939) TCGA-AO-A128-01 20 62577054 62577054 C T UCKL1 Missense_Mutation p.V202I 0.19 tolerated(0.17) possibly_damaging(0.66) TCGA-AO-A128-01 20 62592727 62592727 G A ZNF512B Silent p.L788L 0.18 TCGA-AO-A128-01 20 62698301 62698301 C T TCEA2 Missense_Mutation p.R57W 0.11 deleterious(0) probably_damaging(0.996) TCGA-AO-A128-01 20 6750999 6750999 C - BMP2 Frame_Shift_Del p.Y78Tfs*3 0.11 TCGA-AO-A128-01 21 28210886 28210886 C T ADAMTS1 Silent p.V692V 0.10 TCGA-AO-A128-01 21 33688978 33688978 C T URB1 Missense_Mutation p.V2145M 0.27 tolerated(0.13) benign(0.016) TCGA-AO-A128-01 21 34003518 34003518 T C SYNJ1 Silent p.L1542L 0.11 TCGA-AO-A128-01 21 34635689 34635689 C T IFNAR2 Nonsense_Mutation p.Q478* 0.22 TCGA-AO-A128-01 21 34926994 34926994 C T SON Silent p.D1819D 0.07 TCGA-AO-A128-01 21 35821721 35821721 A G KCNE1 Missense_Mutation p.L71P 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-AO-A128-01 21 43221614 43221614 T C PRDM15 Missense_Mutation p.N1437S 0.10 tolerated_low_confidence(0.16) benign(0.009) TCGA-AO-A128-01 21 43711694 43711694 G A ABCG1 Silent p.A539A 0.15 TCGA-AO-A128-01 21 43892881 43892881 C T RSPH1 3'UTR 0.12 TCGA-AO-A128-01 21 44450251 44450251 A G PKNOX1 3'UTR 0.23 TCGA-AO-A128-01 21 45717585 45717585 G A AIRE Missense_Mutation p.R538H 0.35 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 21 45833947 45833947 G A TRPM2 Missense_Mutation p.A1046T 0.20 deleterious(0) probably_damaging(0.987) TCGA-AO-A128-01 21 46101981 46101981 A G KRTAP12-1 Missense_Mutation p.C20R 0.12 deleterious(0) possibly_damaging(0.712) TCGA-AO-A128-01 21 47421274 47421274 C T COL6A1 Missense_Mutation p.R644W 0.15 deleterious(0) probably_damaging(0.995) TCGA-AO-A128-01 21 47817997 47817997 C T PCNT Missense_Mutation p.L1506F 0.15 possibly_damaging(0.86) TCGA-AO-A128-01 22 19121794 19121794 C T DGCR14 Missense_Mutation p.R449H 0.17 tolerated(0.08) possibly_damaging(0.556) TCGA-AO-A128-01 22 19121972 19121972 G T DGCR14 Missense_Mutation p.L390M 0.17 tolerated(0.09) probably_damaging(1) TCGA-AO-A128-01 22 19707410 19707410 C A SEPT5 Missense_Mutation p.A78D 0.11 deleterious(0.01) probably_damaging(1) TCGA-AO-A128-01 22 19906523 19906523 G T TXNRD2 Silent p.T78T 0.28 TCGA-AO-A128-01 22 19960786 19960786 G T ARVCF Missense_Mutation p.P765Q 0.08 tolerated(0.39) benign(0.045) TCGA-AO-A128-01 22 24108417 24108417 C T CHCHD10 Missense_Mutation p.A103T 0.20 tolerated(0.41) benign(0.387) TCGA-AO-A128-01 22 24129335 24129335 G C SMARCB1 5'UTR 0.29 TCGA-AO-A128-01 22 24159112 24159112 G A SMARCB1 Missense_Mutation p.V262I 0.30 tolerated(0.43) possibly_damaging(0.718) TCGA-AO-A128-01 22 26242210 26242210 T C MYO18B Missense_Mutation p.V1171A 0.25 deleterious(0.02) benign(0.059) TCGA-AO-A128-01 22 28292612 28292612 A G PITPNB Silent p.N100N 0.30 TCGA-AO-A128-01 22 28379181 28379181 A G TTC28 Silent p.D2158D 0.09 TCGA-AO-A128-01 22 29940566 29940566 G A THOC5 Silent p.A41A 0.17 TCGA-AO-A128-01 22 30125155 30125155 A C CABP7 Missense_Mutation p.S160R 0.07 tolerated(0.16) benign(0.187) TCGA-AO-A128-01 22 31529471 31529471 T C INPP5J Splice_Site p.X435_splice 0.15 TCGA-AO-A128-01 22 32272192 32272192 G A DEPDC5 Missense_Mutation p.R1240Q 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-AO-A128-01 22 37962744 37962744 T C CDC42EP1 Missense_Mutation p.Y130H 0.10 tolerated(0.09) probably_damaging(0.929) TCGA-AO-A128-01 22 38111850 38111850 G A TRIOBP Silent p.R179R 0.21 TCGA-AO-A128-01 22 38211803 38211803 T C GCAT Silent p.S342S 0.08 TCGA-AO-A128-01 22 38229172 38229172 G A ANKRD54 Nonsense_Mutation p.R197* 0.12 TCGA-AO-A128-01 22 38328625 38328625 G A MICALL1 Silent p.R694R 0.13 TCGA-AO-A128-01 22 40719021 40719021 G T TNRC6B Nonsense_Mutation p.G1760* 0.19 TCGA-AO-A128-01 22 42263058 42263058 G A SREBF2 Silent p.A104A 0.13 TCGA-AO-A128-01 22 43563971 43563971 T G TTLL12 3'UTR 0.12 TCGA-AO-A128-01 22 43610111 43610111 C T SCUBE1 Missense_Mutation p.V680M 0.14 tolerated(0.18) probably_damaging(0.982) TCGA-AO-A128-01 22 50197950 50197950 C T BRD1 Missense_Mutation p.A476T 0.17 deleterious(0.01) benign(0.066) TCGA-AO-A128-01 22 50655843 50655843 A G SELO 3'UTR 0.15 TCGA-AO-A128-01 22 50664266 50664266 A G TUBGCP6 Missense_Mutation p.M647T 0.15 deleterious(0) possibly_damaging(0.828) TCGA-AO-A128-01 2 100007061 100007061 C T EIF5B Missense_Mutation p.R881C 0.07 benign(0.041) TCGA-AO-A128-01 2 101622441 101622441 G A RPL31 Missense_Mutation p.R85H 0.16 tolerated(0.42) benign(0.013) TCGA-AO-A128-01 2 105885905 105885905 G T TGFBRAP1 Missense_Mutation p.H744N 0.12 tolerated(0.17) benign(0.093) TCGA-AO-A128-01 2 11052976 11052976 G A KCNF1 Missense_Mutation p.A142T 0.12 tolerated(0.5) probably_damaging(0.964) TCGA-AO-A128-01 2 112785991 112785991 G C MERTK Missense_Mutation p.L850F 0.29 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 2 113332666 113332666 G A POLR1B Missense_Mutation p.R923H 0.17 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 2 122273282 122273282 A G CLASP1 Silent p.R201R 0.09 TCGA-AO-A128-01 2 128400504 128400504 T C LIMS2 Missense_Mutation p.H192R 0.14 tolerated(0.63) possibly_damaging(0.63) TCGA-AO-A128-01 2 128757313 128757313 A G SAP130 Splice_Site p.X431_splice 0.15 TCGA-AO-A128-01 2 128767878 128767878 A G SAP130 Silent p.T304T 0.17 TCGA-AO-A128-01 2 130949541 130949541 G A TUBA3E Missense_Mutation p.H406Y 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AO-A128-01 2 133539536 133539536 G T NCKAP5 Silent p.T1616T 0.18 TCGA-AO-A128-01 2 134060613 134060613 A G NCKAP5 Missense_Mutation p.W47R 0.12 tolerated(0.4) probably_damaging(0.961) TCGA-AO-A128-01 2 135743899 135743899 G A MAP3K19 Missense_Mutation p.P848L 0.18 tolerated(0.23) benign(0.002) TCGA-AO-A128-01 2 136605665 136605665 C G MCM6 Missense_Mutation p.E671Q 0.18 tolerated(0.18) benign(0.002) TCGA-AO-A128-01 2 182322564 182322565 - G ITGA4 Frame_Shift_Ins p.A63Gfs*46 0.14 TCGA-AO-A128-01 2 188245463 188245463 G A CALCRL Missense_Mutation p.A79V 0.18 deleterious(0.05) benign(0.005) TCGA-AO-A128-01 2 198334832 198334832 G T COQ10B Missense_Mutation p.E162D 0.11 tolerated(0.06) probably_damaging(0.997) TCGA-AO-A128-01 2 201515911 201515911 G T AOX1 Missense_Mutation p.R1021L 0.15 tolerated(0.43) benign(0.004) TCGA-AO-A128-01 2 20175335 20175335 C T WDR35 Missense_Mutation p.A176T 0.15 tolerated(0.22) benign(0.003) TCGA-AO-A128-01 2 202285229 202285229 A G TRAK2 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-AO-A128-01 2 202483705 202483705 G A ALS2CR11 Missense_Mutation p.S50L 0.14 deleterious(0.03) benign(0.14) TCGA-AO-A128-01 2 208986467 208986467 C A CRYGD Missense_Mutation p.R152M 0.18 deleterious(0) probably_damaging(0.989) TCGA-AO-A128-01 2 216257689 216257689 C T FN1 Missense_Mutation p.G1345D 0.24 tolerated(0.11) probably_damaging(0.95) TCGA-AO-A128-01 2 220089242 220089242 T C ATG9A Missense_Mutation p.Q284R 0.09 tolerated(0.44) benign(0.018) TCGA-AO-A128-01 2 220149662 220149662 C T DNAJB2 Missense_Mutation p.R310C 0.16 deleterious_low_confidence(0.05) benign(0.145) TCGA-AO-A128-01 2 228552091 228552091 T G SLC19A3 3'UTR 0.24 TCGA-AO-A128-01 2 231309023 231309023 A G SP100 Missense_Mutation p.Y134C 0.32 deleterious(0) possibly_damaging(0.878) TCGA-AO-A128-01 2 232121298 232121298 G A ARMC9 Splice_Site p.X294_splice 0.14 TCGA-AO-A128-01 2 234774858 234774858 G A MSL3P1 RNA 0.10 TCGA-AO-A128-01 2 238253712 238253712 T C COL6A3 Missense_Mutation p.K2384R 0.25 unknown(0) TCGA-AO-A128-01 2 238462294 238462294 C A MLPH 3'UTR 0.11 TCGA-AO-A128-01 2 239005491 239005491 C T SCLY Silent p.A394A 0.27 TCGA-AO-A128-01 2 239171644 239171644 C T PER2 Missense_Mutation p.V368M 0.14 tolerated(0.09) benign(0.315) TCGA-AO-A128-01 2 242619704 242619704 G A DTYMK Silent p.G90G 0.12 TCGA-AO-A128-01 2 25469589 25469589 A G DNMT3A Silent p.S393S 0.22 TCGA-AO-A128-01 2 25470968 25470968 C T DNMT3A Missense_Mutation p.V265M 0.21 tolerated(0.07) benign(0.33) TCGA-AO-A128-01 2 27436151 27436151 A G ATRAID Missense_Mutation p.K124R 0.12 tolerated(0.22) benign(0.017) TCGA-AO-A128-01 2 27559218 27559218 T A GTF3C2 Missense_Mutation p.D401V 0.15 deleterious(0) benign(0.179) TCGA-AO-A128-01 2 27801825 27801825 C A C2orf16 Missense_Mutation p.L796I 0.10 tolerated(0.07) possibly_damaging(0.741) TCGA-AO-A128-01 2 28821595 28821595 C A PLB1 Missense_Mutation p.F814L 0.13 deleterious(0.01) probably_damaging(0.93) TCGA-AO-A128-01 2 30998883 30998883 T C CAPN13 Silent p.G100G 0.08 TCGA-AO-A128-01 2 3743393 3743393 G A ALLC Missense_Mutation p.A200T 0.16 tolerated(0.16) benign(0.03) TCGA-AO-A128-01 2 54859887 54859887 T G SPTBN1 Missense_Mutation p.V1250G 0.13 tolerated(0.05) benign(0.232) TCGA-AO-A128-01 2 68358525 68358525 C T WDR92 Missense_Mutation p.V307I 0.13 tolerated(0.11) benign(0.001) TCGA-AO-A128-01 2 70504174 70504174 A T PCYOX1 Nonsense_Mutation p.R390* 0.10 TCGA-AO-A128-01 2 71791212 71791212 G A DYSF Missense_Mutation p.V812I 0.32 tolerated(1) benign(0.002) TCGA-AO-A128-01 2 73316500 73316500 C T RAB11FIP5 Intron 0.15 TCGA-AO-A128-01 2 74595870 74595870 A G DCTN1 Silent p.P613P 0.05 TCGA-AO-A128-01 2 74902407 74902407 G A SEMA4F Missense_Mutation p.G423D 0.18 tolerated(0.18) benign(0.031) TCGA-AO-A128-01 2 85991299 85991299 G A ATOH8 Silent p.K318K 0.13 TCGA-AO-A128-01 2 96809998 96809998 A G DUSP2 Missense_Mutation p.C209R 0.20 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 2 96861094 96861094 G T STARD7 Missense_Mutation p.L162I 0.12 deleterious(0.01) possibly_damaging(0.517) TCGA-AO-A128-01 2 96943289 96943289 A G SNRNP200 Silent p.R1973R 0.11 TCGA-AO-A128-01 2 97527520 97527520 A G SEMA4C Missense_Mutation p.W519R 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 2 98264516 98264516 G A COX5B Missense_Mutation p.R112Q 0.12 tolerated(0.07) benign(0.274) TCGA-AO-A128-01 3 100009479 100009479 T C TBC1D23 Silent p.H178H 0.10 TCGA-AO-A128-01 3 111795764 111795764 A G TMPRSS7 Missense_Mutation p.Y540C 0.11 tolerated(0.18) possibly_damaging(0.451) TCGA-AO-A128-01 3 112357497 112357497 C T CCDC80 Missense_Mutation p.R419Q 0.14 tolerated(0.23) possibly_damaging(0.644) TCGA-AO-A128-01 3 119134691 119134691 G A ARHGAP31 Silent p.V1305V 0.21 TCGA-AO-A128-01 3 119367264 119367264 C A POPDC2 Missense_Mutation p.K284N 0.11 tolerated(0.07) possibly_damaging(0.449) TCGA-AO-A128-01 3 120130714 120130714 A G FSTL1 Silent p.D95D 0.12 TCGA-AO-A128-01 3 122821324 122821324 T C PDIA5 Silent p.V108V 0.05 TCGA-AO-A128-01 3 122842972 122842972 C T PDIA5 Silent p.S223S 0.38 TCGA-AO-A128-01 3 124732118 124732118 T C HEG1 Missense_Mutation p.M769V 0.14 tolerated(0.9) benign(0.002) TCGA-AO-A128-01 3 126071369 126071369 C T KLF15 Missense_Mutation p.V133I 0.15 tolerated(0.28) benign(0.006) TCGA-AO-A128-01 3 126216971 126216971 G A UROC1 Missense_Mutation p.T514I 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-AO-A128-01 3 126445919 126445919 A G CHCHD6 Splice_Site p.X30_splice 0.12 TCGA-AO-A128-01 3 127336831 127336831 G A MCM2 Silent p.S640S 0.12 TCGA-AO-A128-01 3 128181483 128181483 G A DNAJB8 Silent p.N202N 0.08 TCGA-AO-A128-01 3 128690194 128690194 C T KIAA1257 Silent p.T368T 0.21 TCGA-AO-A128-01 3 130653488 130653488 T C ATP2C1 Missense_Mutation p.L120P 0.11 deleterious(0) probably_damaging(0.993) TCGA-AO-A128-01 3 132196903 132196903 C T DNAJC13 Silent p.A876A 0.11 TCGA-AO-A128-01 3 132219693 132219693 G A DNAJC13 Missense_Mutation p.R1491Q 0.09 deleterious(0.03) possibly_damaging(0.531) TCGA-AO-A128-01 3 133486951 133486951 T C TF Missense_Mutation p.L522P 0.11 tolerated(0.35) benign(0) TCGA-AO-A128-01 3 133673861 133673861 T C SLCO2A1 Missense_Mutation p.I192V 0.09 deleterious(0) probably_damaging(0.934) TCGA-AO-A128-01 3 134977998 134977998 A C EPHB1 3'UTR 0.12 TCGA-AO-A128-01 3 140979031 140979031 A G ACPL2 Missense_Mutation p.N5S 0.09 tolerated_low_confidence(0.08) probably_damaging(0.968) TCGA-AO-A128-01 3 141162773 141162773 C T ZBTB38 Nonsense_Mutation p.R515* 0.12 TCGA-AO-A128-01 3 14509669 14509669 G A SLC6A6 Missense_Mutation p.G349S 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 3 145788886 145788886 A G PLOD2 Silent p.H688H 0.16 TCGA-AO-A128-01 3 147114190 147114190 A C ZIC4 Missense_Mutation p.L96R 0.15 deleterious(0) possibly_damaging(0.507) TCGA-AO-A128-01 3 148558714 148558714 C T CPB1 Silent p.R142R 0.20 TCGA-AO-A128-01 3 148917532 148917532 A G CP Missense_Mutation p.Y490H 0.13 tolerated(0.5) benign(0.002) TCGA-AO-A128-01 3 151131006 151131006 C A MED12L Missense_Mutation p.L2039I 0.12 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-AO-A128-01 3 160156609 160156609 A G TRIM59 Silent p.L121L 0.14 TCGA-AO-A128-01 3 167277883 167277883 A C WDR49 Missense_Mutation p.L207R 0.10 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.28 TCGA-AO-A128-01 3 176767830 176767830 C T TBL1XR1 Silent p.G219G 0.07 TCGA-AO-A128-01 3 179298440 179298440 G A ACTL6A Missense_Mutation p.D261N 0.25 deleterious(0) probably_damaging(0.995) TCGA-AO-A128-01 3 179483613 179483613 C A USP13 Missense_Mutation p.P797H 0.11 deleterious(0) probably_damaging(0.996) TCGA-AO-A128-01 3 182871645 182871645 G A LAMP3 Missense_Mutation p.T195M 0.11 deleterious(0.03) probably_damaging(0.919) TCGA-AO-A128-01 3 183888225 183888225 C T DVL3 Silent p.S611S 0.22 TCGA-AO-A128-01 3 183904018 183904018 T C ABCF3 Missense_Mutation p.L8P 0.15 deleterious(0) probably_damaging(0.928) TCGA-AO-A128-01 3 184070829 184070830 CT - CLCN2 Frame_Shift_Del p.P713Hfs*22 0.11 TCGA-AO-A128-01 3 184090846 184090846 C T THPO Missense_Mutation p.V173I 0.07 deleterious(0.03) benign(0.027) TCGA-AO-A128-01 3 184299396 184299396 C T EPHB3 Missense_Mutation p.P995S 0.13 tolerated(0.26) benign(0.027) TCGA-AO-A128-01 3 185407411 185407411 T C IGF2BP2 Missense_Mutation p.M137V 0.10 tolerated(0.44) benign(0.001) TCGA-AO-A128-01 3 193180583 193180583 G A ATP13A4 Silent p.D497D 0.08 TCGA-AO-A128-01 3 195516770 195516770 C T MUC4 Missense_Mutation p.A561T 0.13 unknown(0) TCGA-AO-A128-01 3 195934267 195934267 A G ZDHHC19 Splice_Site p.X229_splice 0.09 TCGA-AO-A128-01 3 196288356 196288356 G A WDR53 5'UTR 0.31 TCGA-AO-A128-01 3 196530018 196530018 T C PAK2 Missense_Mutation p.L140P 0.09 tolerated(0.08) possibly_damaging(0.713) TCGA-AO-A128-01 3 196736542 196736542 C T MFI2 Missense_Mutation p.G491D 0.12 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 3 32932562 32932562 C T TRIM71 Silent p.V622V 0.09 TCGA-AO-A128-01 3 37584050 37584050 T C ITGA9 Missense_Mutation p.C555R 0.14 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 3 42727091 42727091 C T KLHL40 5'UTR 0.08 TCGA-AO-A128-01 3 42777344 42777344 C T CCDC13 Missense_Mutation p.R409Q 0.15 tolerated(0.13) benign(0.025) TCGA-AO-A128-01 3 44636312 44636312 G A ZNF660 Silent p.Q209Q 0.11 TCGA-AO-A128-01 3 45814017 45814017 T C SLC6A20 Missense_Mutation p.M225V 0.10 tolerated(0.95) benign(0.001) TCGA-AO-A128-01 3 46062464 46062464 C T XCR1 Missense_Mutation p.A326T 0.15 tolerated(0.49) benign(0) TCGA-AO-A128-01 3 4726851 4726851 C T ITPR1 Silent p.H1206H 0.14 TCGA-AO-A128-01 3 47452997 47452997 C T PTPN23 Missense_Mutation p.R1237C 0.14 possibly_damaging(0.466) TCGA-AO-A128-01 3 47703959 47703959 C T SMARCC1 Missense_Mutation p.D675N 0.29 tolerated(0.21) benign(0.01) TCGA-AO-A128-01 3 48602618 48602618 C A COL7A1 Missense_Mutation p.E2848D 0.15 benign(0.132) TCGA-AO-A128-01 3 48611121 48611121 A G COL7A1 Splice_Site p.X2191_splice 0.11 TCGA-AO-A128-01 3 48658925 48658925 G A TMEM89 Missense_Mutation p.R89W 0.14 tolerated_low_confidence(0.15) benign(0.029) TCGA-AO-A128-01 3 48677157 48677157 C T CELSR3 Silent p.T3287T 0.13 TCGA-AO-A128-01 3 48685787 48685787 C T CELSR3 Silent p.V2295V 0.35 TCGA-AO-A128-01 3 48789671 48789671 G A PRKAR2A Missense_Mutation p.A340V 0.16 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 3 49160243 49160243 C T LAMB2 Silent p.Q1489Q 0.16 TCGA-AO-A128-01 3 49764637 49764637 T C IP6K1 Missense_Mutation p.H415R 0.13 deleterious(0) probably_damaging(0.983) TCGA-AO-A128-01 3 52356765 52356765 A G DNAH1 Missense_Mutation p.S103G 0.09 benign(0.002) TCGA-AO-A128-01 3 52387625 52387625 T C DNAH1 Silent p.A1152A 0.13 TCGA-AO-A128-01 3 52404816 52404816 A G DNAH1 Missense_Mutation p.E2167G 0.11 benign(0.003) TCGA-AO-A128-01 3 52522444 52522444 G A NISCH Missense_Mutation p.R979H 0.12 tolerated(0.08) probably_damaging(0.964) TCGA-AO-A128-01 3 52523560 52523560 A C NISCH Missense_Mutation p.S1108R 0.12 deleterious(0) probably_damaging(0.944) TCGA-AO-A128-01 3 52541645 52541645 G A STAB1 Missense_Mutation p.C669Y 0.11 deleterious(0) probably_damaging(0.994) TCGA-AO-A128-01 3 52780208 52780208 G A NEK4 Nonsense_Mutation p.R566* 0.10 TCGA-AO-A128-01 3 52833491 52833491 G A ITIH3 Missense_Mutation p.R298Q 0.12 tolerated(0.44) benign(0.011) TCGA-AO-A128-01 3 52860575 52860575 G T ITIH4 Silent p.T204T 0.12 TCGA-AO-A128-01 3 53263358 53263358 C T TKT Missense_Mutation p.R409H 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-AO-A128-01 3 53902823 53902823 C T ACTR8 Missense_Mutation p.E600K 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 3 57439079 57439079 C T DNAH12 Missense_Mutation p.E1147K 0.21 tolerated(0.26) benign(0.292) TCGA-AO-A128-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.22 TCGA-AO-A128-01 3 58413682 58413682 A G PDHB 3'UTR 0.39 TCGA-AO-A128-01 3 58503000 58503000 C T ACOX2 Missense_Mutation p.A595T 0.15 deleterious(0) benign(0.067) TCGA-AO-A128-01 3 63999125 63999125 A T PSMD6 Missense_Mutation p.F329I 0.08 deleterious(0) probably_damaging(0.978) TCGA-AO-A128-01 3 66463382 66463382 T A LRIG1 Missense_Mutation p.N235I 0.15 deleterious(0.02) benign(0.004) TCGA-AO-A128-01 3 69056903 69056903 C T EOGT Silent p.R127R 0.19 TCGA-AO-A128-01 3 73433720 73433720 T C PDZRN3 Missense_Mutation p.Y666C 0.12 tolerated(0.08) benign(0.008) TCGA-AO-A128-01 3 8809055 8809055 C T OXTR Silent p.T273T 0.08 TCGA-AO-A128-01 3 93761883 93761883 A - ARL13B Frame_Shift_Del p.N277Tfs*13 0.07 TCGA-AO-A128-01 3 96706702 96706702 C T EPHA6 Missense_Mutation p.R327W 0.08 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 4 101953498 101953498 G A PPP3CA Missense_Mutation p.T422M 0.24 tolerated(0.26) possibly_damaging(0.886) TCGA-AO-A128-01 4 122749602 122749602 G A BBS7 Silent p.Y615Y 0.16 TCGA-AO-A128-01 4 128694625 128694625 C T SLC25A31 Missense_Mutation p.R282C 0.23 deleterious(0.01) probably_damaging(0.963) TCGA-AO-A128-01 4 140468117 140468117 C T SETD7 Missense_Mutation p.G43R 0.19 tolerated(0.05) probably_damaging(1) TCGA-AO-A128-01 4 151119189 151119189 T C DCLK2 Missense_Mutation p.S299P 0.10 tolerated(0.38) benign(0.008) TCGA-AO-A128-01 4 170038689 170038689 T C SH3RF1 Missense_Mutation p.N588D 0.16 tolerated(0.06) benign(0.289) TCGA-AO-A128-01 4 174449937 174449937 C A HAND2 Missense_Mutation p.K168N 0.05 deleterious(0.02) benign(0.038) TCGA-AO-A128-01 4 17659997 17659997 C G FAM184B Missense_Mutation p.E671D 0.22 deleterious(0.03) benign(0.082) TCGA-AO-A128-01 4 17660080 17660080 C G FAM184B Missense_Mutation p.E644Q 0.26 tolerated(0.07) benign(0.014) TCGA-AO-A128-01 4 177095863 177095863 A G WDR17 Missense_Mutation p.Y1187C 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-AO-A128-01 4 183522272 183522272 A G TENM3 Missense_Mutation p.Q236R 0.12 deleterious_low_confidence(0.01) benign(0.227) TCGA-AO-A128-01 4 183714430 183714430 C T TENM3 Missense_Mutation p.T2202M 0.25 deleterious(0.04) probably_damaging(0.93) TCGA-AO-A128-01 4 3478250 3478250 C G DOK7 Silent p.G171G 0.13 TCGA-AO-A128-01 4 3519911 3519911 C T LRPAP1 Missense_Mutation p.E201K 0.33 tolerated(1) benign(0.008) TCGA-AO-A128-01 4 39276470 39276470 G T WDR19 Missense_Mutation p.R1203M 0.12 deleterious(0) probably_damaging(0.994) TCGA-AO-A128-01 4 48566994 48566994 A G FRYL Silent p.L1133L 0.21 TCGA-AO-A128-01 4 48584515 48584515 T C FRYL Missense_Mutation p.Q662R 0.10 tolerated(0.39) benign(0.017) TCGA-AO-A128-01 4 6083470 6083470 G A JAKMIP1 Nonsense_Mutation p.R323* 0.29 TCGA-AO-A128-01 4 655933 655933 G A PDE6B Missense_Mutation p.R542Q 0.15 deleterious(0.01) possibly_damaging(0.517) TCGA-AO-A128-01 4 6610948 6610948 G A MAN2B2 Silent p.A643A 0.13 TCGA-AO-A128-01 4 6619136 6619136 C T MAN2B2 Missense_Mutation p.R911C 0.11 tolerated(0.22) benign(0.005) TCGA-AO-A128-01 4 71510090 71510090 A G ENAM Missense_Mutation p.T983A 0.21 tolerated(0.27) benign(0.026) TCGA-AO-A128-01 4 74964822 74964822 G A CXCL2 Missense_Mutation p.L6F 0.17 tolerated_low_confidence(0.4) possibly_damaging(0.655) TCGA-AO-A128-01 4 8211494 8211494 C T SH3TC1 Silent p.R64R 0.13 TCGA-AO-A128-01 4 84375038 84375038 T C HELQ Missense_Mutation p.I120V 0.15 deleterious_low_confidence(0.02) benign(0.01) TCGA-AO-A128-01 4 84457806 84457806 C A AGPAT9 Missense_Mutation p.L11I 0.19 tolerated(0.1) benign(0.01) TCGA-AO-A128-01 4 860924 860924 G T GAK Missense_Mutation p.P898T 0.16 tolerated(0.66) benign(0.001) TCGA-AO-A128-01 4 88052236 88052236 C T AFF1 Missense_Mutation p.T989M 0.13 tolerated(0.1) unknown(0) TCGA-AO-A128-01 4 88533962 88533962 T C DSPP Silent p.G208G 0.20 TCGA-AO-A128-01 4 9836581 9836581 G A SLC2A9 Missense_Mutation p.P448L 0.13 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 5 10461337 10461337 G A ROPN1L Silent p.T153T 0.10 TCGA-AO-A128-01 5 112200210 112200210 T C SRP19 Silent p.L58L 0.16 TCGA-AO-A128-01 5 112769140 112769140 G A TSSK1B 3'UTR 0.09 TCGA-AO-A128-01 5 132424803 132424803 A G HSPA4 Silent p.V398V 0.17 TCGA-AO-A128-01 5 133909367 133909367 C T JADE2 Silent p.R489R 0.12 TCGA-AO-A128-01 5 139625481 139625481 A C PFDN1 3'UTR 0.17 TCGA-AO-A128-01 5 140222343 140222343 G A PCDHA8 Silent p.A479A 0.16 TCGA-AO-A128-01 5 140236634 140236634 C T PCDHA10 Missense_Mutation p.T334M 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.532) TCGA-AO-A128-01 5 140572533 140572534 AG - PCDHB10 Frame_Shift_Del p.E137Nfs*11 0.20 TCGA-AO-A128-01 5 140595504 140595504 G A PCDHB13 Silent p.S603S 0.11 TCGA-AO-A128-01 5 140745752 140745752 G A PCDHGA5 Missense_Mutation p.V619I 0.21 deleterious_low_confidence(0.02) benign(0.424) TCGA-AO-A128-01 5 140755876 140755876 C T PCDHGA6 Silent p.G742G 0.14 TCGA-AO-A128-01 5 140865399 140865399 C T PCDHGC4 Missense_Mutation p.P220L 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-AO-A128-01 5 141059798 141059798 C T ARAP3 Missense_Mutation p.A86T 0.27 tolerated(0.43) benign(0.002) TCGA-AO-A128-01 5 141233606 141233606 C A PCDH1 3'UTR 0.17 TCGA-AO-A128-01 5 1432589 1432589 C T SLC6A3 Missense_Mutation p.E215K 0.14 deleterious(0) probably_damaging(0.941) TCGA-AO-A128-01 5 14481719 14481719 G T TRIO Nonsense_Mutation p.G2153* 0.11 TCGA-AO-A128-01 5 145598565 145598565 C T RBM27 Missense_Mutation p.S26L 0.42 deleterious(0) benign(0.149) TCGA-AO-A128-01 5 145641354 145641354 C T RBM27 Silent p.H725H 0.33 TCGA-AO-A128-01 5 147582559 147582559 C T SPINK6 5'UTR 0.19 TCGA-AO-A128-01 5 149410393 149410393 T C HMGXB3 Silent p.T608T 0.11 TCGA-AO-A128-01 5 150441695 150441695 G T TNIP1 Missense_Mutation p.P117Q 0.09 deleterious(0.03) possibly_damaging(0.89) TCGA-AO-A128-01 5 154199994 154199994 T C FAXDC2 Missense_Mutation p.H295R 0.09 tolerated(1) benign(0.002) TCGA-AO-A128-01 5 158711931 158711931 G T UBLCP1 Nonsense_Mutation p.G317* 0.11 TCGA-AO-A128-01 5 175959389 175959389 T C RNF44 Missense_Mutation p.T29A 0.17 tolerated_low_confidence(0.36) benign(0) TCGA-AO-A128-01 5 176004543 176004543 G A CDHR2 Silent p.A446A 0.12 TCGA-AO-A128-01 5 176308441 176308441 T G HK3 Missense_Mutation p.Q830P 0.13 tolerated(0.18) probably_damaging(0.997) TCGA-AO-A128-01 5 178139211 178139211 T C ZNF354A Silent p.G556G 0.19 TCGA-AO-A128-01 5 179263500 179263500 C T SQSTM1 Silent p.G410G 0.26 TCGA-AO-A128-01 5 179996311 179996311 G A CNOT6 Missense_Mutation p.C410Y 0.13 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 5 31526197 31526197 G A DROSHA Silent p.Y281Y 0.24 TCGA-AO-A128-01 5 34915820 34915820 C T RAD1 5'UTR 0.09 TCGA-AO-A128-01 5 36976100 36976100 G A NIPBL Missense_Mutation p.R364H 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AO-A128-01 5 37176052 37176052 A G C5orf42 Silent p.T1979T 0.12 TCGA-AO-A128-01 5 37181009 37181009 A G C5orf42 Silent p.G1840G 0.22 TCGA-AO-A128-01 5 39203055 39203055 T G FYB Missense_Mutation p.K13T 0.08 deleterious(0) probably_damaging(0.981) TCGA-AO-A128-01 5 41018805 41018805 T C MROH2B Silent p.Q887Q 0.23 TCGA-AO-A128-01 5 53467694 53467694 A G ARL15 Missense_Mutation p.I38T 0.18 deleterious(0) probably_damaging(0.983) TCGA-AO-A128-01 5 53606316 53606316 G A ARL15 5'UTR 0.21 TCGA-AO-A128-01 5 56207269 56207269 T C SETD9 Silent p.V124V 0.10 TCGA-AO-A128-01 5 7414700 7414700 T C ADCY2 Silent p.H75H 0.18 TCGA-AO-A128-01 5 78351646 78351646 T C DMGDH Missense_Mutation p.E121G 0.16 tolerated(0.06) possibly_damaging(0.61) TCGA-AO-A128-01 5 79366572 79366572 A G THBS4 Missense_Mutation p.Q520R 0.12 deleterious(0.05) possibly_damaging(0.524) TCGA-AO-A128-01 5 80736447 80736447 C A SSBP2 Missense_Mutation p.M286I 0.10 tolerated(0.1) benign(0.062) TCGA-AO-A128-01 5 90025457 90025459 AGG - GPR98 Splice_Site p.X3476_splice 0.17 TCGA-AO-A128-01 5 90449061 90449061 A G GPR98 Silent p.A6216A 0.08 TCGA-AO-A128-01 6 108843576 108843576 C T LACE1 Missense_Mutation p.T465M 0.19 tolerated(0.12) benign(0.09) TCGA-AO-A128-01 6 110422810 110422810 T C WASF1 Silent p.L501L 0.16 TCGA-AO-A128-01 6 110424708 110424708 G A WASF1 Missense_Mutation p.P256S 0.15 deleterious(0.05) unknown(0) TCGA-AO-A128-01 6 111196206 111196206 T C AMD1 5'UTR 0.09 TCGA-AO-A128-01 6 112430672 112430672 C T LAMA4 Missense_Mutation p.A1814T 0.14 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 6 119228637 119228637 A - ASF1A Frame_Shift_Del p.K159Nfs*35 0.18 TCGA-AO-A128-01 6 126206415 126206415 C T NCOA7 Silent p.C270C 0.15 TCGA-AO-A128-01 6 132271447 132271447 C A CTGF Missense_Mutation p.G176W 0.09 deleterious(0) probably_damaging(0.998) TCGA-AO-A128-01 6 135287507 135287507 C T HBS1L Missense_Mutation p.R668H 0.21 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 6 138601244 138601244 G A KIAA1244 Missense_Mutation p.A802T 0.16 deleterious(0.01) possibly_damaging(0.507) TCGA-AO-A128-01 6 143093049 143093049 G A HIVEP2 Nonsense_Mutation p.R943* 0.14 TCGA-AO-A128-01 6 147525627 147525627 T G STXBP5 5'Flank 0.18 TCGA-AO-A128-01 6 149699979 149699979 A G TAB2 Missense_Mutation p.S310G 0.12 tolerated(0.48) benign(0) TCGA-AO-A128-01 6 151671656 151671656 C G AKAP12 Missense_Mutation p.D710E 0.12 tolerated(0.41) benign(0.086) TCGA-AO-A128-01 6 157522354 157522354 G A ARID1B Silent p.T1542T 0.13 TCGA-AO-A128-01 6 160485885 160485885 G A IGF2R Missense_Mutation p.R1356Q 0.10 tolerated(0.21) benign(0.165) TCGA-AO-A128-01 6 161575123 161575123 C T AGPAT4 Intron 0.19 TCGA-AO-A128-01 6 16326645 16326645 C T ATXN1 Missense_Mutation p.V633I 0.16 deleterious(0.01) probably_damaging(0.924) TCGA-AO-A128-01 6 165715757 165715757 C T C6orf118 Silent p.T18T 0.19 TCGA-AO-A128-01 6 168348584 168348584 C T MLLT4 Missense_Mutation p.A1195V 0.08 tolerated_low_confidence(0.1) benign(0.008) TCGA-AO-A128-01 6 168363320 168363320 G A MLLT4 3'UTR 0.17 TCGA-AO-A128-01 6 170591953 170591953 A G DLL1 3'UTR 0.16 TCGA-AO-A128-01 6 17987638 17987638 A G KIF13A Splice_Site p.X19_splice 0.16 TCGA-AO-A128-01 6 18197353 18197353 C T KDM1B Silent p.C213C 0.14 TCGA-AO-A128-01 6 18222307 18222307 A G KDM1B 3'UTR 0.20 TCGA-AO-A128-01 6 24559309 24559309 A G KIAA0319 Missense_Mutation p.L889P 0.16 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 6 27782349 27782349 T C HIST1H2AJ Missense_Mutation p.E57G 0.10 deleterious_low_confidence(0.01) benign(0.079) TCGA-AO-A128-01 6 31669105 31669105 A G ABHD16A Missense_Mutation p.W68R 0.23 deleterious(0) probably_damaging(0.95) TCGA-AO-A128-01 6 31867995 31867995 C T ZBTB12 Missense_Mutation p.R363H 0.04 tolerated(0.14) possibly_damaging(0.812) TCGA-AO-A128-01 6 32036209 32036209 C T TNXB Missense_Mutation p.G2060S 0.08 benign(0.025) TCGA-AO-A128-01 6 32039961 32039961 A T TNXB Missense_Mutation p.V1599D 0.11 possibly_damaging(0.854) TCGA-AO-A128-01 6 33372652 33372652 A G KIFC1 Silent p.A260A 0.12 TCGA-AO-A128-01 6 33384457 33384457 T C CUTA Silent p.S189S 0.12 TCGA-AO-A128-01 6 33653962 33653962 G A ITPR3 Missense_Mutation p.V1934M 0.13 deleterious(0.01) probably_damaging(0.922) TCGA-AO-A128-01 6 39053872 39053872 G - GLP1R 3'UTR 0.17 TCGA-AO-A128-01 6 43155721 43155721 G A CUL9 Missense_Mutation p.A618T 0.19 tolerated(0.52) benign(0.001) TCGA-AO-A128-01 6 43181581 43181581 C T CUL9 Silent p.S1873S 0.08 TCGA-AO-A128-01 6 43475245 43475245 G A LRRC73 Missense_Mutation p.R277W 0.12 tolerated_low_confidence(0.12) benign(0.075) TCGA-AO-A128-01 6 4716001 4716001 C T CDYL 5'UTR 0.14 TCGA-AO-A128-01 6 47641159 47641159 A G GPR111 Intron 0.16 TCGA-AO-A128-01 6 4892606 4892606 C T CDYL Silent p.N228N 0.21 TCGA-AO-A128-01 6 7889729 7889729 T - TXNDC5 Frame_Shift_Del p.K273Rfs*14 0.17 TCGA-AO-A128-01 7 100028954 100028954 A C MEPCE Missense_Mutation p.K438T 0.05 deleterious(0.03) benign(0.101) TCGA-AO-A128-01 7 100074998 100074998 C T TSC22D4 Missense_Mutation p.A222T 0.09 tolerated_low_confidence(0.15) benign(0.002) TCGA-AO-A128-01 7 100304970 100304970 T G POP7 3'UTR 0.08 TCGA-AO-A128-01 7 101957776 101957776 C G SH2B2 Missense_Mutation p.R474G 0.13 tolerated(0.18) benign(0.109) TCGA-AO-A128-01 7 102006523 102006523 G T PRKRIP1 Intron 0.23 TCGA-AO-A128-01 7 102389914 102389914 T C FAM185A Missense_Mutation p.V87A 0.18 tolerated(0.05) benign(0.327) TCGA-AO-A128-01 7 103473997 103473997 A G RELN Missense_Mutation p.C154R 0.08 deleterious(0) benign(0.067) TCGA-AO-A128-01 7 104747054 104747054 G A KMT2E Silent p.P894P 0.10 TCGA-AO-A128-01 7 107395899 107395899 A G CBLL1 Missense_Mutation p.I135V 0.16 tolerated(0.7) benign(0.073) TCGA-AO-A128-01 7 128033079 128033079 G A IMPDH1 Silent p.Y594Y 0.12 TCGA-AO-A128-01 7 128518660 128518660 A G KCP RNA 0.09 TCGA-AO-A128-01 7 128585935 128585935 G A IRF5 Missense_Mutation p.V78M 0.08 deleterious(0.03) possibly_damaging(0.796) TCGA-AO-A128-01 7 130023254 130023254 G A CPA1 Missense_Mutation p.R169H 0.19 deleterious(0.02) possibly_damaging(0.455) TCGA-AO-A128-01 7 135261085 135261085 T C NUP205 Silent p.D137D 0.12 TCGA-AO-A128-01 7 138252293 138252293 C A TRIM24 Missense_Mutation p.P533H 0.09 tolerated(0.1) probably_damaging(0.994) TCGA-AO-A128-01 7 138437532 138437532 A G ATP6V0A4 Silent p.A289A 0.09 TCGA-AO-A128-01 7 139281515 139281515 T C HIPK2 Missense_Mutation p.T889A 0.14 deleterious(0) possibly_damaging(0.844) TCGA-AO-A128-01 7 139652455 139652455 G A TBXAS1 Missense_Mutation p.V187M 0.16 tolerated_low_confidence(0.08) benign(0.023) TCGA-AO-A128-01 7 140244491 140244491 C T DENND2A Missense_Mutation p.V752I 0.11 tolerated(0.09) benign(0.027) TCGA-AO-A128-01 7 141362439 141362439 A G KIAA1147 3'UTR 0.15 TCGA-AO-A128-01 7 143632733 143632733 G A OR2F2 Missense_Mutation p.M136I 0.16 deleterious(0.01) benign(0.282) TCGA-AO-A128-01 7 149481144 149481144 C - SSPO RNA 0.27 TCGA-AO-A128-01 7 149500159 149500159 C T SSPO RNA 0.27 TCGA-AO-A128-01 7 150068459 150068459 G A REPIN1 Silent p.T100T 0.15 TCGA-AO-A128-01 7 150417324 150417324 G A GIMAP1 Missense_Mutation p.V78M 0.13 tolerated(0.29) possibly_damaging(0.718) TCGA-AO-A128-01 7 150731368 150731368 G T ABCB8 Missense_Mutation p.L139F 0.17 tolerated(0.35) benign(0.234) TCGA-AO-A128-01 7 151082230 151082230 C T WDR86 Missense_Mutation p.R269H 0.13 deleterious(0.04) benign(0.011) TCGA-AO-A128-01 7 151704925 151704925 T G GALNTL5 Missense_Mutation p.S308A 0.34 tolerated(1) benign(0.001) TCGA-AO-A128-01 7 157178240 157178240 T C DNAJB6 Missense_Mutation p.V209A 0.14 deleterious(0) unknown(0) TCGA-AO-A128-01 7 1785737 1785737 C T ELFN1 Missense_Mutation p.A502V 0.30 tolerated(0.08) benign(0.007) TCGA-AO-A128-01 7 20421461 20421461 G A ITGB8 Missense_Mutation p.G305R 0.07 deleterious(0) probably_damaging(0.999) TCGA-AO-A128-01 7 21470120 21470120 T G SP4 Missense_Mutation p.L446R 0.09 deleterious(0.03) probably_damaging(0.979) TCGA-AO-A128-01 7 2255847 2255847 G A MAD1L1 Missense_Mutation p.L252F 0.12 tolerated(0.3) benign(0.019) TCGA-AO-A128-01 7 23309594 23309594 C T GPNMB Missense_Mutation p.T422M 0.08 deleterious(0.02) benign(0.393) TCGA-AO-A128-01 7 23339091 23339091 G T MALSU1 Missense_Mutation p.Q40H 0.11 tolerated(0.13) benign(0.187) TCGA-AO-A128-01 7 2622253 2622253 C T IQCE Nonsense_Mutation p.Q224* 0.10 TCGA-AO-A128-01 7 30671999 30671999 C A GARS Silent p.T680T 0.35 TCGA-AO-A128-01 7 30876278 30876278 T C FAM188B Silent p.D379D 0.22 TCGA-AO-A128-01 7 31732042 31732042 C A PPP1R17 5'UTR 0.13 TCGA-AO-A128-01 7 4050679 4050679 C T SDK1 Missense_Mutation p.T738I 0.21 deleterious(0) possibly_damaging(0.703) TCGA-AO-A128-01 7 4056935 4056935 C T SDK1 Silent p.A851A 0.10 TCGA-AO-A128-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.11 TCGA-AO-A128-01 7 44156074 44156074 G A POLD2 Silent p.S272S 0.13 TCGA-AO-A128-01 7 44228650 44228650 G A GCK 5'UTR 0.32 TCGA-AO-A128-01 7 45701815 45701815 T C ADCY1 Splice_Site p.X535_splice 0.08 TCGA-AO-A128-01 7 47937758 47937758 T C PKD1L1 Missense_Mutation p.T700A 0.11 deleterious(0.03) probably_damaging(0.98) TCGA-AO-A128-01 7 48027048 48027048 T C SUN3 Splice_Site p.X319_splice 0.10 TCGA-AO-A128-01 7 50468070 50468070 C T IKZF1 Silent p.Y393Y 0.30 TCGA-AO-A128-01 7 5167372 5167372 C A ZNF890P Intron 0.31 TCGA-AO-A128-01 7 55260533 55260533 C T EGFR Silent p.Y900Y 0.09 TCGA-AO-A128-01 7 5545208 5545208 G A FBXL18 Silent p.D24D 0.29 TCGA-AO-A128-01 7 55468927 55468927 C T LANCL2 Missense_Mutation p.R247C 0.15 deleterious(0) probably_damaging(0.99) TCGA-AO-A128-01 7 64292176 64292176 A - ZNF138 Frame_Shift_Del p.I162Ffs*56 0.11 TCGA-AO-A128-01 7 66296265 66296265 C T GTF2IRD1P1 RNA 0.13 TCGA-AO-A128-01 7 70800547 70800547 T C WBSCR17 Missense_Mutation p.S84P 0.37 tolerated(1) probably_damaging(0.969) TCGA-AO-A128-01 7 72413695 72413695 C T POM121 Missense_Mutation p.P790S 0.07 tolerated(0.18) probably_damaging(0.941) TCGA-AO-A128-01 7 72985236 72985238 CTT - TBL2 In_Frame_Del p.K315del 0.10 TCGA-AO-A128-01 7 72987283 72987283 C T TBL2 Missense_Mutation p.A206T 0.11 tolerated(0.05) possibly_damaging(0.474) TCGA-AO-A128-01 7 73097548 73097548 T C DNAJC30 Missense_Mutation p.Y69C 0.09 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 7 73790656 73790656 A G CLIP2 Missense_Mutation p.Q642R 0.20 deleterious(0) possibly_damaging(0.856) TCGA-AO-A128-01 7 75028494 75028494 C T TRIM73 Missense_Mutation p.R93W 0.19 tolerated(0.12) benign(0.032) TCGA-AO-A128-01 7 75609770 75609770 G A POR Silent p.Q160Q 0.07 TCGA-AO-A128-01 7 75615335 75615335 C T POR Silent p.D588D 0.10 TCGA-AO-A128-01 7 7612723 7612723 G A MIOS Missense_Mutation p.R206H 0.09 deleterious(0.01) benign(0.119) TCGA-AO-A128-01 7 87485619 87485619 G T SLC25A40 Missense_Mutation p.P49T 0.12 deleterious(0.04) possibly_damaging(0.486) TCGA-AO-A128-01 7 93518425 93518425 C T TFPI2 Missense_Mutation p.G128S 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-AO-A128-01 7 93633516 93633516 C A BET1 Missense_Mutation p.G5C 0.22 deleterious(0.01) possibly_damaging(0.807) TCGA-AO-A128-01 7 97939890 97939890 G A BAIAP2L1 Silent p.Y274Y 0.14 TCGA-AO-A128-01 7 99247714 99247714 T G CYP3A5 Missense_Mutation p.K465N 0.12 deleterious(0.03) benign(0.055) TCGA-AO-A128-01 7 99273845 99273845 C T CYP3A5 Intron 0.19 TCGA-AO-A128-01 7 99757654 99757654 C T GAL3ST4 Missense_Mutation p.R453H 0.11 deleterious(0) probably_damaging(0.992) TCGA-AO-A128-01 7 99773404 99773404 G A GPC2 Missense_Mutation p.R147W 0.14 deleterious(0) probably_damaging(0.959) TCGA-AO-A128-01 7 99798463 99798463 T C STAG3 Silent p.A644A 0.16 TCGA-AO-A128-01 8 101165703 101165703 T C POLR2K 3'UTR 0.08 TCGA-AO-A128-01 8 101276385 101276385 C T RNF19A Missense_Mutation p.V449I 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-AO-A128-01 8 10557966 10557966 G A C8orf74 Silent p.A290A 0.25 TCGA-AO-A128-01 8 107705011 107705011 G A OXR1 Missense_Mutation p.R195Q 0.08 tolerated(0.11) probably_damaging(0.942) TCGA-AO-A128-01 8 108334135 108334135 G C ANGPT1 Missense_Mutation p.T266S 0.13 tolerated(1) benign(0.001) TCGA-AO-A128-01 8 110393733 110393733 T C PKHD1L1 Missense_Mutation p.C100R 0.14 deleterious(0) probably_damaging(0.987) TCGA-AO-A128-01 8 113649054 113649054 C A CSMD3 Missense_Mutation p.R1236M 0.13 deleterious(0) probably_damaging(0.994) TCGA-AO-A128-01 8 121238908 121238908 C T COL14A1 Missense_Mutation p.T636M 0.12 deleterious(0) benign(0.027) TCGA-AO-A128-01 8 121561136 121561136 G A SNTB1 Missense_Mutation p.T400M 0.28 deleterious(0.02) possibly_damaging(0.782) TCGA-AO-A128-01 8 124968316 124968316 T C FER1L6 Splice_Site p.X26_splice 0.13 TCGA-AO-A128-01 8 127568643 127568643 G T FAM84B 3'UTR 0.23 TCGA-AO-A128-01 8 133918967 133918967 G T TG Missense_Mutation p.E1223D 0.16 tolerated(1) benign(0) TCGA-AO-A128-01 8 134251279 134251279 G A NDRG1 Missense_Mutation p.R343C 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-AO-A128-01 8 134477068 134477068 G A ST3GAL1 Silent p.I212I 0.17 TCGA-AO-A128-01 8 141231656 141231656 G T TRAPPC9 Missense_Mutation p.L918M 0.19 tolerated(0.19) probably_damaging(0.994) TCGA-AO-A128-01 8 143784425 143784425 G A LY6K Intron 0.07 TCGA-AO-A128-01 8 144940328 144940328 C T EPPK1 Missense_Mutation p.R2365H 0.03 possibly_damaging(0.888) TCGA-AO-A128-01 8 144995648 144995648 A G PLEC Missense_Mutation p.Y2918H 0.13 probably_damaging(0.996) TCGA-AO-A128-01 8 145009481 145009481 C T PLEC Silent p.K338K 0.08 TCGA-AO-A128-01 8 145018009 145018009 A G PLEC Intron 0.08 TCGA-AO-A128-01 8 145664140 145664140 C A TONSL Intron 0.08 TCGA-AO-A128-01 8 145677911 145677911 G A CYHR1 Silent p.H176H 0.12 TCGA-AO-A128-01 8 145737423 145737423 G A RECQL4 Silent p.C1088C 0.07 TCGA-AO-A128-01 8 27097623 27097624 CT - STMN4 Frame_Shift_Del p.E152Gfs*7 0.11 TCGA-AO-A128-01 8 30999101 30999101 C T WRN Silent p.C1041C 0.14 TCGA-AO-A128-01 8 36703125 36703125 A C KCNU1 Missense_Mutation p.Q577H 0.22 tolerated(0.46) benign(0.059) TCGA-AO-A128-01 8 41615585 41615585 C T ANK1 Missense_Mutation p.R66Q 0.19 tolerated(0.05) benign(0.177) TCGA-AO-A128-01 8 42038077 42038077 C T PLAT Missense_Mutation p.R339Q 0.14 tolerated(0.44) benign(0.041) TCGA-AO-A128-01 8 53852750 53852750 G A NPBWR1 Missense_Mutation p.A95T 0.19 tolerated(0.28) probably_damaging(0.976) TCGA-AO-A128-01 8 55539012 55539012 C A RP1 Nonsense_Mutation p.S857* 0.17 TCGA-AO-A128-01 8 56695306 56695306 G T TGS1 Splice_Site p.X34_splice 0.14 TCGA-AO-A128-01 8 59343210 59343210 A G UBXN2B Silent p.S107S 0.09 TCGA-AO-A128-01 8 59409253 59409253 A G CYP7A1 Missense_Mutation p.L273P 0.17 tolerated(0.12) benign(0.282) TCGA-AO-A128-01 8 67988731 67988731 G A CSPP1 Silent p.A74A 0.22 TCGA-AO-A128-01 8 70744610 70744610 T C SLCO5A1 Missense_Mutation p.D100G 0.05 tolerated_low_confidence(0.21) benign(0.001) TCGA-AO-A128-01 8 71025856 71025856 C T NCOA2 3'UTR 0.29 TCGA-AO-A128-01 8 73849474 73849474 C T KCNB2 Silent p.H628H 0.30 TCGA-AO-A128-01 8 74529674 74529674 T C STAU2 Silent p.P141P 0.12 TCGA-AO-A128-01 8 80677450 80677450 A T HEY1 Silent p.P300P 0.22 TCGA-AO-A128-01 8 8233987 8233987 C T SGK223 Silent p.E644E 0.30 TCGA-AO-A128-01 8 90782026 90782026 G T RIPK2 Missense_Mutation p.W170C 0.08 tolerated(0.13) probably_damaging(1) TCGA-AO-A128-01 8 91029453 91029453 T G DECR1 Missense_Mutation p.F57L 0.16 tolerated(0.73) benign(0.09) TCGA-AO-A128-01 8 95893941 95893941 T C CCNE2 Silent p.K378K 0.11 TCGA-AO-A128-01 8 98155319 98155319 A G CPQ Missense_Mutation p.M443V 0.16 tolerated(0.17) benign(0.002) TCGA-AO-A128-01 8 98289557 98289557 C T TSPYL5 Silent p.A172A 0.22 TCGA-AO-A128-01 9 100136930 100136930 G T CCDC180 Missense_Mutation p.R1613M 0.14 deleterious(0) possibly_damaging(0.702) TCGA-AO-A128-01 9 100843458 100843458 G A NANS Intron 0.12 TCGA-AO-A128-01 9 100971232 100971232 C T TBC1D2 Missense_Mutation p.R623Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-AO-A128-01 9 100971409 100971409 C A TBC1D2 Missense_Mutation p.G564V 0.11 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 9 113431242 113431242 G A MUSK Missense_Mutation p.G20R 0.16 tolerated_low_confidence(0.35) benign(0.001) TCGA-AO-A128-01 9 115928409 115928409 C T FKBP15 Silent p.T1203T 0.12 TCGA-AO-A128-01 9 116187685 116187685 A G C9orf43 Silent p.T309T 0.10 TCGA-AO-A128-01 9 117044775 117044775 C T COL27A1 Silent p.G1270G 0.12 TCGA-AO-A128-01 9 117062394 117062394 C T COL27A1 Silent p.F1543F 0.10 TCGA-AO-A128-01 9 123636990 123636990 A G PHF19 Silent p.T10T 0.05 TCGA-AO-A128-01 9 124976343 124976343 C T LHX6 Missense_Mutation p.M263I 0.12 deleterious(0.01) benign(0.318) TCGA-AO-A128-01 9 127781107 127781107 C T SCAI Missense_Mutation p.A301T 0.15 deleterious(0.05) possibly_damaging(0.786) TCGA-AO-A128-01 9 129957410 129957410 G A RALGPS1 Silent p.R317R 0.11 TCGA-AO-A128-01 9 130707788 130707788 G T FAM102A Missense_Mutation p.R259S 0.09 deleterious(0.02) possibly_damaging(0.78) TCGA-AO-A128-01 9 130984837 130984837 C T DNM1 Nonsense_Mutation p.R364* 0.08 TCGA-AO-A128-01 9 131670789 131670789 A G LRRC8A Missense_Mutation p.E449G 0.15 deleterious(0) possibly_damaging(0.628) TCGA-AO-A128-01 9 131671227 131671227 A C LRRC8A Missense_Mutation p.E595A 0.08 tolerated(0.18) probably_damaging(0.992) TCGA-AO-A128-01 9 131857840 131857840 C T CRAT Missense_Mutation p.G573S 0.30 tolerated(0.07) probably_damaging(0.931) TCGA-AO-A128-01 9 131870163 131870163 T C CRAT Missense_Mutation p.Q74R 0.25 tolerated(0.54) benign(0.001) TCGA-AO-A128-01 9 132377802 132377802 G A C9orf50 Nonsense_Mutation p.Q281* 0.40 TCGA-AO-A128-01 9 133799759 133799759 T C FIBCD1 Missense_Mutation p.M193V 0.18 tolerated(0.4) benign(0.001) TCGA-AO-A128-01 9 135946589 135946589 A G CEL Missense_Mutation p.E570G 0.38 tolerated(0.12) benign(0.001) TCGA-AO-A128-01 9 136030663 136030663 C T GBGT1 Silent p.A87A 0.10 TCGA-AO-A128-01 9 136231781 136231781 C A SURF4 Nonsense_Mutation p.G160* 0.32 TCGA-AO-A128-01 9 136276117 136276117 A G REXO4 Silent p.H329H 0.09 TCGA-AO-A128-01 9 136337282 136337282 T G SLC2A6 Missense_Mutation p.Q462P 0.13 tolerated(0.15) possibly_damaging(0.633) TCGA-AO-A128-01 9 137591925 137591925 G A COL5A1 Missense_Mutation p.E150K 0.12 probably_damaging(0.966) TCGA-AO-A128-01 9 137622115 137622115 A G COL5A1 Missense_Mutation p.M320V 0.07 benign(0.004) TCGA-AO-A128-01 9 138774778 138774778 C T CAMSAP1 Missense_Mutation p.A103T 0.17 tolerated(0.28) benign(0.007) TCGA-AO-A128-01 9 139342536 139342536 C T SEC16A Silent p.S2130S 0.10 TCGA-AO-A128-01 9 139357507 139357507 A G SEC16A Silent p.N1575N 0.27 TCGA-AO-A128-01 9 139564754 139564755 - C EGFL7 Frame_Shift_Ins p.R184Qfs*100 0.33 TCGA-AO-A128-01 9 139633863 139633863 T C LCN6 3'Flank 0.10 TCGA-AO-A128-01 9 139753231 139753231 G A MAMDC4 Missense_Mutation p.R961H 0.14 tolerated(0.09) probably_damaging(0.949) TCGA-AO-A128-01 9 139802645 139802645 C T TRAF2 Missense_Mutation p.R164W 0.20 deleterious(0.01) possibly_damaging(0.462) TCGA-AO-A128-01 9 140242594 140242594 G A EXD3 Missense_Mutation p.R643W 0.16 deleterious(0) probably_damaging(0.983) TCGA-AO-A128-01 9 140510289 140510289 C A C9orf37 Missense_Mutation p.R121S 0.07 deleterious_low_confidence(0) benign(0.017) TCGA-AO-A128-01 9 15490114 15490114 A - PSIP1 Frame_Shift_Del p.L53* 0.27 TCGA-AO-A128-01 9 20789451 20789451 C T FOCAD Silent p.D433D 0.11 TCGA-AO-A128-01 9 2717879 2717879 C T KCNV2 Missense_Mutation p.T47I 0.22 tolerated_low_confidence(0.26) benign(0.001) TCGA-AO-A128-01 9 32633083 32633083 C T TAF1L Missense_Mutation p.R832H 0.21 deleterious(0) benign(0.364) TCGA-AO-A128-01 9 33798608 33798608 G T PRSS3 Missense_Mutation p.K250N 0.08 deleterious(0) possibly_damaging(0.858) TCGA-AO-A128-01 9 35078687 35078687 G T FANCG Silent p.T74T 0.15 TCGA-AO-A128-01 9 35295831 35295831 C T UNC13B Missense_Mutation p.S222L 0.16 tolerated_low_confidence(0.69) benign(0) TCGA-AO-A128-01 9 35563030 35563030 C T FAM166B Missense_Mutation p.V112I 0.17 tolerated(0.18) benign(0.023) TCGA-AO-A128-01 9 35679330 35679330 T C CA9 Silent p.S352S 0.12 TCGA-AO-A128-01 9 35707171 35707171 C T TLN1 Missense_Mutation p.R1618Q 0.41 deleterious(0) possibly_damaging(0.777) TCGA-AO-A128-01 9 35738880 35738880 C T GBA2 Missense_Mutation p.V606I 0.10 tolerated(0.21) benign(0.027) TCGA-AO-A128-01 9 35749338 35749338 T C RGP1 5'UTR 0.12 TCGA-AO-A128-01 9 38620234 38620234 T G ANKRD18A Missense_Mutation p.S17R 0.13 tolerated(0.22) benign(0.003) TCGA-AO-A128-01 9 43625186 43625186 A - SPATA31A6 Frame_Shift_Del p.Q1168Sfs*22 0.13 TCGA-AO-A128-01 9 72131695 72131695 G A APBA1 Silent p.R144R 0.10 TCGA-AO-A128-01 9 73152124 73152124 G A TRPM3 Missense_Mutation p.T1290M 0.11 deleterious(0.04) probably_damaging(0.968) TCGA-AO-A128-01 9 84607752 84607752 G A SPATA31D1 Silent p.P789P 0.38 TCGA-AO-A128-01 9 90344590 90344590 G A CTSL Missense_Mutation p.V242M 0.13 tolerated(0.05) possibly_damaging(0.768) TCGA-AO-A128-01 9 92007339 92007339 G A SEMA4D Silent p.N207N 0.29 TCGA-AO-A128-01 9 96339128 96339128 G A PHF2 Missense_Mutation p.A25T 0.20 tolerated(0.07) unknown(0) TCGA-AO-A128-01 9 96416752 96416752 C T PHF2 Missense_Mutation p.R283C 0.06 tolerated(0.25) unknown(0) TCGA-AO-A128-01 9 97535372 97535372 G A C9orf3 Missense_Mutation p.A296T 0.17 deleterious(0.01) possibly_damaging(0.831) TCGA-AO-A128-01 9 98703781 98703781 A G ERCC6L2 Silent p.V610V 0.17 TCGA-AO-A128-01 9 99581357 99581357 T C ZNF782 Silent p.G316G 0.14 TCGA-AO-A128-01 9 99798915 99798915 G A CTSV Missense_Mutation p.R171C 0.16 deleterious(0.04) possibly_damaging(0.866) TCGA-AO-A128-01 X 101818942 101818942 C T NXF4 RNA 0.09 TCGA-AO-A128-01 X 103268190 103268190 C T H2BFWT Missense_Mutation p.A15T 0.14 tolerated_low_confidence(0.18) benign(0.225) TCGA-AO-A128-01 X 109696855 109696855 T G RGAG1 Missense_Mutation p.S1004A 0.16 deleterious(0.03) benign(0.012) TCGA-AO-A128-01 X 111155568 111155568 T C TRPC5 Missense_Mutation p.Y284C 0.08 tolerated(0.2) benign(0) TCGA-AO-A128-01 X 114250380 114250380 G A IL13RA2 Silent p.N33N 0.30 TCGA-AO-A128-01 X 114425072 114425072 C A RBMXL3 Silent p.A356A 0.12 TCGA-AO-A128-01 X 118827137 118827137 A G SEPT6 5'UTR 0.09 TCGA-AO-A128-01 X 119512629 119512629 G A ATP1B4 Splice_Site p.X304_splice 0.22 TCGA-AO-A128-01 X 120183312 120183312 T C GLUD2 3'UTR 0.16 TCGA-AO-A128-01 X 12809625 12809625 C T PRPS2 Silent p.N3N 0.16 TCGA-AO-A128-01 X 12885643 12885643 A G TLR7 5'UTR 0.12 TCGA-AO-A128-01 X 128877936 128877936 G A XPNPEP2 Splice_Site p.X42_splice 0.25 TCGA-AO-A128-01 X 12903792 12903792 T C TLR7 Silent p.H55H 0.07 TCGA-AO-A128-01 X 130222739 130222739 G A ARHGAP36 Missense_Mutation p.V542I 0.10 tolerated_low_confidence(1) benign(0) TCGA-AO-A128-01 X 135574445 135574445 G A BRS3 Missense_Mutation p.V371I 0.10 tolerated(0.34) benign(0.165) TCGA-AO-A128-01 X 136648799 136648799 C T ZIC3 5'UTR 0.21 TCGA-AO-A128-01 X 136649035 136649035 C T ZIC3 Missense_Mutation p.A62V 0.22 tolerated(0.19) benign(0.003) TCGA-AO-A128-01 X 139040237 139040237 C T CXorf66 Silent p.A76A 0.21 TCGA-AO-A128-01 X 140984787 140984787 C A MAGEC3 Missense_Mutation p.P415T 0.21 tolerated(0.19) benign(0.005) TCGA-AO-A128-01 X 152955960 152955960 A T SLC6A8 Missense_Mutation p.K131N 0.15 deleterious(0.01) possibly_damaging(0.872) TCGA-AO-A128-01 X 153036043 153036043 C T PLXNB3 Silent p.C675C 0.17 TCGA-AO-A128-01 X 153039724 153039724 G A PLXNB3 Silent p.T1224T 0.20 TCGA-AO-A128-01 X 153041103 153041103 C T PLXNB3 Silent p.Y1486Y 0.08 TCGA-AO-A128-01 X 153069053 153069053 G A PDZD4 Missense_Mutation p.R689C 0.32 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 X 153220334 153220334 G A HCFC1 Silent p.S1172S 0.10 TCGA-AO-A128-01 X 153583246 153583246 T C FLNA Missense_Mutation p.I1722V 0.15 tolerated(0.14) benign(0.216) TCGA-AO-A128-01 X 153585990 153585990 T C FLNA Missense_Mutation p.D1586G 0.12 tolerated(0.14) possibly_damaging(0.864) TCGA-AO-A128-01 X 15790679 15790679 G A CA5B Missense_Mutation p.G134E 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A128-01 X 17750446 17750446 C A NHS Silent p.A1585A 0.09 TCGA-AO-A128-01 X 17819745 17819745 T G RAI2 Missense_Mutation p.H129P 0.11 deleterious(0.01) probably_damaging(0.977) TCGA-AO-A128-01 X 19764460 19764460 T G SH3KBP1 Missense_Mutation p.T88P 0.11 tolerated(0.29) benign(0.007) TCGA-AO-A128-01 X 2825381 2825381 C T ARSD Silent p.P571P 0.19 TCGA-AO-A128-01 X 29973739 29973739 C T IL1RAPL1 Silent p.D631D 0.10 TCGA-AO-A128-01 X 38156554 38156554 A G RPGR Missense_Mutation p.M466T 0.08 benign(0.014) TCGA-AO-A128-01 X 41495899 41495899 C T CASK Missense_Mutation p.A283T 0.13 deleterious(0.02) benign(0.206) TCGA-AO-A128-01 X 47041645 47041645 G A RBM10 Missense_Mutation p.D624N 0.14 tolerated(0.23) benign(0.19) TCGA-AO-A128-01 X 47086037 47086037 A G CDK16 Silent p.T398T 0.07 TCGA-AO-A128-01 X 47306831 47306831 A G ZNF41 Nonstop_Mutation p.*780Rext*16 0.19 TCGA-AO-A128-01 X 47426043 47426043 G A ARAF Missense_Mutation p.R188H 0.10 tolerated(0.42) benign(0) TCGA-AO-A128-01 X 47479175 47479175 C T SYN1 5'UTR 0.10 TCGA-AO-A128-01 X 48336458 48336458 A C FTSJ1 Missense_Mutation p.K8T 0.06 deleterious(0) benign(0.213) TCGA-AO-A128-01 X 48834656 48834656 G T GRIPAP1 Intron 0.10 TCGA-AO-A128-01 X 48895889 48895889 T C TFE3 Missense_Mutation p.T205A 0.18 deleterious(0.05) benign(0.217) TCGA-AO-A128-01 X 53409197 53409197 C T SMC1A Silent p.G1131G 0.17 TCGA-AO-A128-01 X 54954167 54954167 T C TRO Missense_Mutation p.S611P 0.12 deleterious(0) unknown(0) TCGA-AO-A128-01 X 63410163 63410163 A G AMER1 Missense_Mutation p.S1002P 0.10 tolerated(0.08) benign(0.005) TCGA-AO-A128-01 X 67937939 67937939 G A STARD8 Missense_Mutation p.V395M 0.25 tolerated(0.14) probably_damaging(0.999) TCGA-AO-A128-01 X 69510176 69510176 A T KIF4A Intron 0.18 TCGA-AO-A128-01 X 70356304 70356304 G A MED12 Silent p.R1733R 0.12 TCGA-AO-A128-01 X 70389449 70389449 C A NLGN3 Silent p.A683A 0.07 TCGA-AO-A128-01 X 71425475 71425475 T C ERCC6L Missense_Mutation p.T1048A 0.20 tolerated(0.29) benign(0.002) TCGA-AO-A128-01 X 75649540 75649540 C A MAGEE1 Missense_Mutation p.P406H 0.12 tolerated(0.11) possibly_damaging(0.533) TCGA-AO-A128-01 X 8555971 8555971 G A KAL1 Missense_Mutation p.S197F 0.24 deleterious(0) probably_damaging(0.985) TCGA-AO-A128-01 X 99597039 99597039 G T PCDH19 Missense_Mutation p.L904M 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-AO-A128-01 X 99919932 99919932 G C SRPX2 Missense_Mutation p.E173Q 0.15 tolerated(0.45) probably_damaging(0.964) TCGA-AO-A128-01 X 99956243 99956243 T C SYTL4 Missense_Mutation p.R137G 0.15 deleterious(0) benign(0.092) TCGA-AO-A129-01 10 102003460 102003460 T C CWF19L1 Missense_Mutation p.T347A 0.11 tolerated(0.18) benign(0.098) TCGA-AO-A129-01 10 27459869 27459869 C G MASTL Missense_Mutation p.H661D 0.08 tolerated(0.35) possibly_damaging(0.675) TCGA-AO-A129-01 10 49452893 49452893 C G FRMPD2 Splice_Site p.X104_splice 0.24 TCGA-AO-A129-01 10 64136169 64136169 C A ZNF365 Missense_Mutation p.L73I 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.496) TCGA-AO-A129-01 10 70097706 70097706 G C HNRNPH3 Missense_Mutation p.E68D 0.11 tolerated(0.19) unknown(0) TCGA-AO-A129-01 10 76788498 76788498 A T KAT6B Missense_Mutation p.R1306W 0.11 benign(0.325) TCGA-AO-A129-01 11 1003796 1003796 A C AP2A2 Missense_Mutation p.Q733P 0.05 deleterious(0.05) possibly_damaging(0.861) TCGA-AO-A129-01 11 100909961 100909961 G C PGR Missense_Mutation p.I896M 0.08 deleterious(0.02) possibly_damaging(0.902) TCGA-AO-A129-01 11 108106472 108106472 T - ATM Frame_Shift_Del p.Y137Tfs*16 0.11 TCGA-AO-A129-01 11 113103876 113103876 C A NCAM1 Silent p.P559P 0.06 TCGA-AO-A129-01 11 113269799 113269799 G A ANKK1 Missense_Mutation p.V370M 0.19 deleterious(0) probably_damaging(0.991) TCGA-AO-A129-01 11 118516531 118516531 C A PHLDB1 Silent p.L1165L 0.11 TCGA-AO-A129-01 11 33880976 33881008 ATCTGTCACCTACACAGAAATGCTTCTGACAGG - LMO2 In_Frame_Del p.A193_Y204delinsD 0.08 TCGA-AO-A129-01 11 34107665 34107679 CCCCACTCTTTGACT - CAPRIN1 In_Frame_Del p.H342_P346del 0.28 TCGA-AO-A129-01 11 4825512 4825512 C T OR52R1 Silent p.P33P 0.29 TCGA-AO-A129-01 11 49175795 49175795 A C FOLH1 Missense_Mutation p.Y625D 0.13 tolerated(0.1) possibly_damaging(0.812) TCGA-AO-A129-01 11 5475075 5475075 T G OR51I2 Missense_Mutation p.S119R 0.08 deleterious(0) probably_damaging(0.927) TCGA-AO-A129-01 11 64527236 64527251 ATTGCGGTCCTTTACG - PYGM Frame_Shift_Del p.V41Wfs*43 0.16 TCGA-AO-A129-01 11 7334807 7334807 A G SYT9 Missense_Mutation p.I227V 0.31 tolerated(0.27) benign(0.016) TCGA-AO-A129-01 11 74546847 74546847 G A RNF169 Missense_Mutation p.R400H 0.22 deleterious(0) probably_damaging(0.998) TCGA-AO-A129-01 12 117718527 117718527 C G NOS1 Intron 0.24 TCGA-AO-A129-01 12 13529254 13529254 T C C12orf36 Missense_Mutation p.D29G 0.13 possibly_damaging(0.728) TCGA-AO-A129-01 12 1742054 1742054 G C WNT5B Missense_Mutation p.G104A 0.06 deleterious(0) probably_damaging(0.999) TCGA-AO-A129-01 12 4736168 4736168 C A AKAP3 Missense_Mutation p.A634S 0.10 tolerated(0.58) benign(0.005) TCGA-AO-A129-01 13 113333794 113333794 A G C13orf35 Missense_Mutation p.K34R 0.20 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-AO-A129-01 14 20502724 20502724 T G OR4K13 Missense_Mutation p.N65T 0.16 deleterious(0) possibly_damaging(0.611) TCGA-AO-A129-01 14 74972814 74972814 A C LTBP2 Missense_Mutation p.C1372G 0.32 deleterious(0) possibly_damaging(0.873) TCGA-AO-A129-01 14 91948389 91948389 G A SMEK1 Missense_Mutation p.S149L 0.21 tolerated(0.07) benign(0.256) TCGA-AO-A129-01 15 31776741 31776741 C T OTUD7A Missense_Mutation p.V513M 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-AO-A129-01 15 45658607 45658607 T A GATM Missense_Mutation p.I259F 0.15 tolerated(0.07) benign(0.059) TCGA-AO-A129-01 15 74468195 74468195 G C ISLR Missense_Mutation p.E332D 0.12 tolerated(0.28) probably_damaging(0.994) TCGA-AO-A129-01 16 21209118 21209118 C G ZP2 Missense_Mutation p.R688S 0.12 tolerated_low_confidence(0.74) benign(0.004) TCGA-AO-A129-01 16 4802723 4802723 G T ZNF500 Missense_Mutation p.S366Y 0.45 deleterious(0) probably_damaging(0.979) TCGA-AO-A129-01 16 51173218 51173218 A T SALL1 Nonsense_Mutation p.L972* 0.08 TCGA-AO-A129-01 16 57714218 57714233 GTCAGACCTGAGGGGA - GPR97 Frame_Shift_Del p.V237Pfs*8 0.26 TCGA-AO-A129-01 16 67942876 67942876 C T PSKH1 Missense_Mutation p.S75L 0.10 tolerated(0.2) benign(0) TCGA-AO-A129-01 16 705201 705201 G A WDR90 Intron 0.68 TCGA-AO-A129-01 17 10243510 10243510 A T MYH13 Silent p.P671P 0.11 TCGA-AO-A129-01 17 1630415 1630415 T G WDR81 Missense_Mutation p.L721R 0.28 deleterious(0) probably_damaging(1) TCGA-AO-A129-01 17 20156897 20156897 C T SPECC1 Missense_Mutation p.S893L 0.34 tolerated(0.12) benign(0.271) TCGA-AO-A129-01 17 41113324 41113324 C G PTGES3L-AARSD1 Silent p.V246V 0.10 TCGA-AO-A129-01 17 46690618 46690618 C A HOXB8 Missense_Mutation p.E226D 0.15 tolerated(0.11) possibly_damaging(0.899) TCGA-AO-A129-01 17 5036239 5036239 G T USP6 Missense_Mutation p.W77L 0.15 deleterious_low_confidence(0) benign(0.307) TCGA-AO-A129-01 17 56688647 56688647 C T TEX14 Silent p.Q359Q 0.11 TCGA-AO-A129-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.41 tolerated(0.11) benign(0.308) TCGA-AO-A129-01 17 78112938 78112938 C A EIF4A3 Missense_Mutation p.V204L 0.13 deleterious(0.04) benign(0.277) TCGA-AO-A129-01 18 44702689 44702689 C T IER3IP1 5'UTR 0.20 TCGA-AO-A129-01 19 16793232 16793232 G T TMEM38A Missense_Mutation p.G156V 0.26 deleterious(0) probably_damaging(1) TCGA-AO-A129-01 19 17379746 17379746 G T BABAM1 Missense_Mutation p.S44I 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-AO-A129-01 19 37904189 37904189 C G ZNF569 Missense_Mutation p.Q457H 0.11 deleterious(0.04) benign(0.001) TCGA-AO-A129-01 19 39205151 39205151 A - ACTN4 Frame_Shift_Del p.N288Tfs*7 0.12 TCGA-AO-A129-01 19 39691392 39691392 A G NCCRP1 Missense_Mutation p.E275G 0.23 deleterious(0.01) possibly_damaging(0.86) TCGA-AO-A129-01 19 39957372 39957372 G T SUPT5H Missense_Mutation p.A342S 0.26 tolerated(0.42) benign(0.027) TCGA-AO-A129-01 19 41601842 41601842 G A CYP2A13 Missense_Mutation p.R494H 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-AO-A129-01 19 47242077 47242077 C T STRN4 Silent p.R117R 0.10 TCGA-AO-A129-01 19 57803047 57803047 G C ZNF460 Missense_Mutation p.V380L 0.20 deleterious(0) possibly_damaging(0.457) TCGA-AO-A129-01 19 8620576 8620576 G T MYO1F Missense_Mutation p.N36K 0.15 deleterious(0) probably_damaging(0.999) TCGA-AO-A129-01 1 112524770 112524770 G A KCND3 Silent p.I193I 0.13 TCGA-AO-A129-01 1 11255132 11255132 G A ANGPTL7 3'UTR 0.10 TCGA-AO-A129-01 1 12919596 12919596 C T PRAMEF2 Silent p.F112F 0.37 TCGA-AO-A129-01 1 152275739 152275739 C A FLG Missense_Mutation p.D3875Y 0.16 unknown(0) TCGA-AO-A129-01 1 155697421 155697421 T C DAP3 Silent p.C165C 0.09 TCGA-AO-A129-01 1 158064645 158064645 C T KIRREL Missense_Mutation p.P670L 0.09 tolerated(0.07) benign(0.055) TCGA-AO-A129-01 1 158548979 158548979 A T OR10X1 Silent p.I237I 0.08 TCGA-AO-A129-01 1 161206335 161206335 C G NR1I3 Missense_Mutation p.E7D 0.07 tolerated(0.05) benign(0.009) TCGA-AO-A129-01 1 162829414 162829414 C T C1orf110 Missense_Mutation p.G8E 0.05 deleterious(0.05) benign(0.002) TCGA-AO-A129-01 1 175067625 175067625 C T TNN Silent p.S671S 0.27 TCGA-AO-A129-01 1 201079345 201079345 C A CACNA1S Missense_Mutation p.A69S 0.31 deleterious(0) probably_damaging(0.992) TCGA-AO-A129-01 1 201984385 201984385 C G ELF3 Silent p.L350L 0.34 TCGA-AO-A129-01 1 203455945 203455945 T G PRELP Missense_Mutation p.L362W 0.04 deleterious(0) probably_damaging(0.993) TCGA-AO-A129-01 1 206821440 206821440 T A DYRK3 Silent p.I299I 0.47 TCGA-AO-A129-01 1 207304999 207304999 A G C4BPA Missense_Mutation p.H333R 0.06 tolerated(0.53) benign(0.012) TCGA-AO-A129-01 1 232581367 232581367 G A SIPA1L2 Silent p.P1087P 0.20 TCGA-AO-A129-01 1 236645641 236645641 G A EDARADD Missense_Mutation p.D114N 0.04 deleterious(0) probably_damaging(0.998) TCGA-AO-A129-01 1 236925894 236925894 C A ACTN2 Missense_Mutation p.A887E 0.24 deleterious(0.05) probably_damaging(1) TCGA-AO-A129-01 1 248789657 248789657 A G OR2T11 Missense_Mutation p.L258P 0.11 deleterious(0) probably_damaging(1) TCGA-AO-A129-01 1 27238463 27238463 C T NR0B2 Missense_Mutation p.R216H 0.20 tolerated(0.22) benign(0.052) TCGA-AO-A129-01 1 27677281 27677281 T A SYTL1 Intron 0.19 TCGA-AO-A129-01 1 44443802 44443802 C G ATP6V0B 3'UTR 0.21 TCGA-AO-A129-01 1 55524274 55524274 G A PCSK9 Missense_Mutation p.C486Y 0.09 deleterious(0) probably_damaging(0.994) TCGA-AO-A129-01 1 63872002 63872002 C A ALG6 Missense_Mutation p.L121M 0.09 tolerated(0.06) benign(0.107) TCGA-AO-A129-01 1 6585855 6585855 C G NOL9 3'UTR 0.13 TCGA-AO-A129-01 1 82416781 82416781 C A LPHN2 Missense_Mutation p.H524Q 0.18 tolerated(0.17) probably_damaging(0.999) TCGA-AO-A129-01 1 85624636 85624636 T C SYDE2 Missense_Mutation p.K1128E 0.11 tolerated(0.25) benign(0.027) TCGA-AO-A129-01 1 91784682 91784682 T A HFM1 Missense_Mutation p.K922I 0.13 deleterious(0) probably_damaging(0.972) TCGA-AO-A129-01 20 30070112 30070112 C G REM1 Nonsense_Mutation p.S149* 0.09 TCGA-AO-A129-01 20 43936867 43936867 G T RBPJL Missense_Mutation p.R36L 0.24 tolerated_low_confidence(0.4) benign(0.038) TCGA-AO-A129-01 20 44676722 44676722 G C SLC12A5 Missense_Mutation p.W693C 0.14 deleterious(0) probably_damaging(0.994) TCGA-AO-A129-01 20 44757541 44757541 A G CD40 Silent p.E232E 0.07 TCGA-AO-A129-01 20 55027271 55027271 C A CASS4 Missense_Mutation p.P347T 0.08 deleterious(0.03) possibly_damaging(0.638) TCGA-AO-A129-01 20 58645036 58645036 G T C20orf197 Missense_Mutation p.A3S 0.10 tolerated_low_confidence(0.88) benign(0.003) TCGA-AO-A129-01 21 43906485 43906485 G C RSPH1 Missense_Mutation p.Q121E 0.12 tolerated(0.2) probably_damaging(0.964) TCGA-AO-A129-01 22 38044419 38044419 G T SH3BP1 Missense_Mutation p.L431F 0.20 deleterious(0) probably_damaging(1) TCGA-AO-A129-01 22 38228655 38228655 T C ANKRD54 Missense_Mutation p.T273A 0.06 deleterious(0.03) benign(0.11) TCGA-AO-A129-01 22 39884853 39884853 C G MGAT3 Missense_Mutation p.P501A 0.17 deleterious(0.01) probably_damaging(0.952) TCGA-AO-A129-01 22 46655629 46655629 G A PKDREJ Silent p.Y1197Y 0.08 TCGA-AO-A129-01 2 102988435 102988435 T C IL18R1 Silent p.L109L 0.18 TCGA-AO-A129-01 2 122489755 122489755 A C NIFK Missense_Mutation p.F90C 0.09 deleterious(0) probably_damaging(0.998) TCGA-AO-A129-01 2 166201296 166201296 T A SCN2A Missense_Mutation p.F932I 0.18 deleterious(0) probably_damaging(0.999) TCGA-AO-A129-01 2 215831626 215831626 G A ABCA12 Silent p.L1944L 0.17 TCGA-AO-A129-01 2 228221933 228221933 G C MFF 3'UTR 0.12 TCGA-AO-A129-01 2 230693997 230693997 T A TRIP12 Missense_Mutation p.L406F 0.07 deleterious(0) probably_damaging(0.999) TCGA-AO-A129-01 2 232319836 232319836 C T NCL 3'UTR 0.17 TCGA-AO-A129-01 2 24303814 24303814 C T TP53I3 Missense_Mutation p.G165E 0.11 tolerated(0.08) possibly_damaging(0.585) TCGA-AO-A129-01 2 60689460 60689460 C G BCL11A Missense_Mutation p.R196T 0.24 deleterious(0) probably_damaging(0.972) TCGA-AO-A129-01 2 66664937 66664937 G A MEIS1 Silent p.P27P 0.14 TCGA-AO-A129-01 3 122255834 122255834 C A PARP9 Nonsense_Mutation p.E653* 0.06 TCGA-AO-A129-01 3 149619889 149619889 C T RNF13 Missense_Mutation p.S147F 0.15 deleterious(0) possibly_damaging(0.679) TCGA-AO-A129-01 3 185198262 185198262 G T MAP3K13 Missense_Mutation p.R915L 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.651) TCGA-AO-A129-01 3 195938103 195938103 G C ZDHHC19 Missense_Mutation p.S28R 0.08 deleterious(0) probably_damaging(0.999) TCGA-AO-A129-01 3 197703501 197703501 A G LMLN Missense_Mutation p.E155G 0.11 tolerated(0.13) benign(0.138) TCGA-AO-A129-01 3 47702923 47702940 CTCCCGGACCCGAGAAAA - SMARCC1 In_Frame_Del p.F722_E727del 0.21 TCGA-AO-A129-01 3 49162717 49162717 G C LAMB2 Missense_Mutation p.R897G 0.26 deleterious(0) probably_damaging(0.957) TCGA-AO-A129-01 3 63264159 63264159 C A SYNPR 5'UTR 0.08 TCGA-AO-A129-01 4 106890190 106890190 C G NPNT 3'UTR 0.14 TCGA-AO-A129-01 4 1379703 1379703 A G UVSSA Missense_Mutation p.K695R 0.08 tolerated(0.68) benign(0.029) TCGA-AO-A129-01 4 177136637 177136637 G A ASB5 3'UTR 0.23 TCGA-AO-A129-01 4 71500244 71500244 C A ENAM Missense_Mutation p.H144N 0.34 tolerated(0.51) benign(0.053) TCGA-AO-A129-01 4 79359855 79359855 C T FRAS1 Silent p.I1783I 0.21 TCGA-AO-A129-01 5 55237028 55237028 C G IL6ST Missense_Mutation p.G880A 0.10 tolerated(0.32) benign(0.003) TCGA-AO-A129-01 5 75993917 75993917 C T IQGAP2 Nonsense_Mutation p.Q1438* 0.29 TCGA-AO-A129-01 6 139568972 139568972 G C TXLNB Missense_Mutation p.F384L 0.08 deleterious(0.01) probably_damaging(1) TCGA-AO-A129-01 6 150322667 150322667 C T RAET1K RNA 0.07 TCGA-AO-A129-01 6 155579175 155579175 C A TFB1M Missense_Mutation p.R279M 0.06 tolerated(0.17) possibly_damaging(0.549) TCGA-AO-A129-01 6 160858230 160858230 G A SLC22A3 Silent p.A425A 0.15 TCGA-AO-A129-01 6 30673728 30673728 C T MDC1 Missense_Mutation p.V1078I 0.13 tolerated(1) benign(0.001) TCGA-AO-A129-01 6 33288193 33288193 A G DAXX Silent p.S405S 0.16 TCGA-AO-A129-01 6 44119646 44119646 C T TMEM63B Silent p.I579I 0.27 TCGA-AO-A129-01 6 52370475 52370475 G C TRAM2 Missense_Mutation p.A266G 0.43 deleterious(0) benign(0.243) TCGA-AO-A129-01 7 105254792 105254792 C G ATXN7L1 Missense_Mutation p.Q663H 0.16 tolerated(0.21) benign(0.347) TCGA-AO-A129-01 7 121652195 121652195 C T PTPRZ1 Missense_Mutation p.S1032F 0.22 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-AO-A129-01 7 131815045 131815045 G T PLXNA4 3'UTR 0.14 TCGA-AO-A129-01 7 142326533 142326533 A T TRBV19 5'UTR 0.22 TCGA-AO-A129-01 7 143573445 143573445 G C FAM115A Missense_Mutation p.S86C 0.15 deleterious(0) benign(0.353) TCGA-AO-A129-01 7 155567327 155567327 G A RBM33 Silent p.Q1150Q 0.30 TCGA-AO-A129-01 7 155567336 155567336 C A RBM33 Missense_Mutation p.F1153L 0.28 deleterious(0) unknown(0) TCGA-AO-A129-01 7 15599882 15599882 G A AGMO Silent p.F47F 0.14 TCGA-AO-A129-01 7 23352363 23352363 A G IGF2BP3 Silent p.Y544Y 0.15 TCGA-AO-A129-01 7 23682551 23682551 G A CCDC126 Silent p.A80A 0.31 TCGA-AO-A129-01 7 40535978 40536005 AACCTCAGGTTTGTTTTTGAAGTTTAAC - SUGCT Splice_Site p.X369_splice 0.20 TCGA-AO-A129-01 7 48349591 48349591 G T ABCA13 Missense_Mutation p.Q3123H 0.14 benign(0.001) TCGA-AO-A129-01 7 95668611 95668611 T G DYNC1I1 Missense_Mutation p.F480V 0.08 deleterious(0.05) probably_damaging(0.997) TCGA-AO-A129-01 8 100866232 100866232 G C VPS13B Missense_Mutation p.G3564R 0.20 tolerated(0.68) probably_damaging(0.953) TCGA-AO-A129-01 8 105441860 105441860 T C DPYS Missense_Mutation p.E288G 0.28 tolerated(0.13) benign(0.234) TCGA-AO-A129-01 8 120613690 120613690 G C ENPP2 Missense_Mutation p.H282Q 0.51 deleterious(0.03) benign(0.023) TCGA-AO-A129-01 8 133150245 133150245 G C KCNQ3 Silent p.L529L 0.60 TCGA-AO-A129-01 8 3000129 3000129 T G CSMD1 Silent p.G2033G 0.20 TCGA-AO-A129-01 8 37635577 37635577 C T PROSC Silent p.C261C 0.17 TCGA-AO-A129-01 8 77761274 77761274 G C ZFHX4 Silent p.G1185G 0.11 TCGA-AO-A129-01 9 6330216 6330216 C G TPD52L3 3'UTR 0.04 TCGA-AO-A129-01 X 41204455 41204455 G A DDX3X Missense_Mutation p.D350N 0.15 deleterious(0) probably_damaging(0.997) TCGA-AO-A129-01 X 69424916 69424916 A G DGAT2L6 Missense_Mutation p.E325G 0.11 deleterious(0.01) benign(0.111) TCGA-AO-A12A-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.29 TCGA-AO-A12A-01 11 107300004 107300005 - T CWF19L2 Nonsense_Mutation p.Y318* 0.15 TCGA-AO-A12A-01 12 27126870 27126870 G A TM7SF3 3'UTR 0.06 TCGA-AO-A12A-01 12 56479001 56479001 C T ERBB3 Intron 0.11 TCGA-AO-A12A-01 12 80750196 80750196 G T OTOGL Missense_Mutation p.G1927V 0.19 tolerated(0.22) benign(0.263) TCGA-AO-A12A-01 14 86089046 86089046 G A FLRT2 Silent p.T396T 0.10 TCGA-AO-A12A-01 18 56203486 56203486 T A ALPK2 Missense_Mutation p.R1311S 0.16 deleterious(0.05) possibly_damaging(0.642) TCGA-AO-A12A-01 19 17845130 17845130 G A MAP1S Missense_Mutation p.A1025T 0.29 deleterious(0.01) benign(0.113) TCGA-AO-A12A-01 19 20026206 20026206 G A ZNF93 Missense_Mutation p.V41I 0.11 deleterious(0.01) possibly_damaging(0.789) TCGA-AO-A12A-01 19 2997746 2997746 G A TLE2 3'UTR 0.22 TCGA-AO-A12A-01 19 44117260 44117260 C A SRRM5 Missense_Mutation p.H329Q 0.10 tolerated(0.38) benign(0.061) TCGA-AO-A12A-01 19 5778547 5778547 C T CATSPERD Missense_Mutation p.R753C 0.27 tolerated(0.06) possibly_damaging(0.656) TCGA-AO-A12A-01 2 43797612 43797612 T A THADA Missense_Mutation p.Y701F 0.08 tolerated(0.21) benign(0.022) TCGA-AO-A12A-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.36 deleterious(0.04) probably_damaging(0.96) TCGA-AO-A12A-01 3 178936092 178936092 A G PIK3CA Missense_Mutation p.E545G 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-AO-A12A-01 4 48147173 48147173 C T TEC Missense_Mutation p.V465I 0.11 tolerated(0.23) benign(0.001) TCGA-AO-A12A-01 5 153056565 153056565 G A GRIA1 Silent p.A301A 0.14 TCGA-AO-A12A-01 6 43571740 43571740 G A POLH Silent p.E292E 0.11 TCGA-AO-A12A-01 9 6012280 6012280 T A RANBP6 3'UTR 0.17 TCGA-AO-A12A-01 X 37027942 37027942 C T FAM47C Missense_Mutation p.R487C 0.14 tolerated_low_confidence(0.09) benign(0.066) TCGA-AO-A12A-01 X 44942776 44942776 T C KDM6A Missense_Mutation p.L1119P 0.27 deleterious(0) probably_damaging(0.954) TCGA-AO-A12B-01 10 6470185 6470185 T C PRKCQ Missense_Mutation p.E702G 0.14 tolerated(0.15) benign(0.033) TCGA-AO-A12B-01 11 89075354 89075354 T A NOX4 Missense_Mutation p.I409F 0.18 deleterious(0) possibly_damaging(0.846) TCGA-AO-A12B-01 11 92715124 92715124 C T MTNR1B Silent p.S245S 0.19 TCGA-AO-A12B-01 12 14825805 14825805 A C GUCY2C Splice_Site p.X390_splice 0.46 TCGA-AO-A12B-01 12 48866482 48866482 G A ANP32D Missense_Mutation p.R12Q 0.05 tolerated(0.06) benign(0.001) TCGA-AO-A12B-01 12 50616076 50616076 G T LIMA1 Missense_Mutation p.Q120K 0.55 tolerated(0.2) benign(0.011) TCGA-AO-A12B-01 12 72956810 72956810 C T TRHDE Nonsense_Mutation p.Q633* 0.54 TCGA-AO-A12B-01 12 76786476 76786476 G A OSBPL8 Missense_Mutation p.R272C 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-AO-A12B-01 13 38357162 38357162 A G TRPC4 Silent p.A103A 0.37 TCGA-AO-A12B-01 14 36041771 36041771 G T RALGAPA1 Missense_Mutation p.P1949T 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-AO-A12B-01 14 38060738 38060738 G - FOXA1 Frame_Shift_Del p.F417Lfs*23 0.10 TCGA-AO-A12B-01 16 67644796 67644799 GAGA - CTCF Frame_Shift_Del p.K23Lfs*38 0.76 TCGA-AO-A12B-01 17 58260550 58260550 C T USP32 Missense_Mutation p.A1367T 0.42 tolerated_low_confidence(0.46) benign(0.001) TCGA-AO-A12B-01 19 58371616 58371616 A T ZNF587 3'UTR 0.45 TCGA-AO-A12B-01 1 104162362 104162362 A T AMY2A Missense_Mutation p.S234C 0.31 deleterious(0) benign(0.007) TCGA-AO-A12B-01 1 17083675 17083675 A G MST1L RNA 0.09 TCGA-AO-A12B-01 1 171958092 171958092 T A DNM3 Missense_Mutation p.N131K 0.21 deleterious(0) probably_damaging(0.983) TCGA-AO-A12B-01 1 214543010 214543010 G A PTPN14 Nonsense_Mutation p.R1021* 0.18 TCGA-AO-A12B-01 2 202002702 202002702 A G CFLAR Intron 0.41 TCGA-AO-A12B-01 5 140256980 140256980 C T PCDHA12 Silent p.D641D 0.20 TCGA-AO-A12B-01 5 43616033 43616033 T G NNT Missense_Mutation p.I155M 0.48 deleterious(0.03) possibly_damaging(0.894) TCGA-AO-A12B-01 5 64748575 64748575 G A ADAMTS6 Missense_Mutation p.R268C 0.44 deleterious(0) probably_damaging(0.987) TCGA-AO-A12B-01 6 152831401 152831401 G A SYNE1 Missense_Mutation p.R170W 0.10 probably_damaging(0.994) TCGA-AO-A12B-01 8 6420368 6420368 C G ANGPT2 Missense_Mutation p.G30R 0.15 tolerated(0.11) benign(0.202) TCGA-AO-A12B-01 X 71417425 71417425 G T PIN4 3'UTR 0.74 TCGA-AO-A12D-01 10 102255183 102255183 C G SEC31B Missense_Mutation p.E811Q 0.13 tolerated(0.34) benign(0.342) TCGA-AO-A12D-01 10 102269149 102269149 G A SEC31B Missense_Mutation p.S108L 0.16 tolerated(0.07) benign(0.014) TCGA-AO-A12D-01 10 76603067 76603067 G A KAT6B Missense_Mutation p.R151Q 0.28 benign(0.335) TCGA-AO-A12D-01 10 96535226 96535226 G A CYP2C19 Silent p.G137G 0.16 TCGA-AO-A12D-01 11 108549071 108549071 C T DDX10 Silent p.N189N 0.07 TCGA-AO-A12D-01 11 113618275 113618275 G A ZW10 Missense_Mutation p.S417L 0.10 deleterious(0) benign(0.175) TCGA-AO-A12D-01 11 115099873 115099873 G A CADM1 Silent p.V227V 0.16 TCGA-AO-A12D-01 11 118828354 118828354 G C UPK2 Missense_Mutation p.E132Q 0.11 tolerated(0.43) possibly_damaging(0.803) TCGA-AO-A12D-01 11 13736053 13736053 C T FAR1 Intron 0.12 TCGA-AO-A12D-01 11 67059174 67059174 G A ANKRD13D Missense_Mutation p.M166I 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-AO-A12D-01 11 76062204 76062204 C T PRKRIR Missense_Mutation p.E664K 0.14 deleterious(0.02) possibly_damaging(0.899) TCGA-AO-A12D-01 12 111785675 111785675 C T CUX2 Missense_Mutation p.P1336L 0.16 tolerated_low_confidence(0.56) benign(0) TCGA-AO-A12D-01 12 113909204 113909204 C G LHX5 Missense_Mutation p.E34Q 0.11 deleterious(0.05) benign(0.442) TCGA-AO-A12D-01 12 122716807 122716807 C G VPS33A Missense_Mutation p.E593Q 0.12 deleterious(0.01) possibly_damaging(0.836) TCGA-AO-A12D-01 13 115091046 115091046 G C CHAMP1 Missense_Mutation p.E577Q 0.06 tolerated(0.07) possibly_damaging(0.686) TCGA-AO-A12D-01 14 62259590 62259590 G A SNAPC1 Missense_Mutation p.E348K 0.07 deleterious(0.04) probably_damaging(0.952) TCGA-AO-A12D-01 16 57188235 57188235 G A FAM192A Silent p.I244I 0.13 TCGA-AO-A12D-01 16 731231 731231 T C STUB1 Missense_Mutation p.L80P 0.12 tolerated(0.13) possibly_damaging(0.829) TCGA-AO-A12D-01 16 88799821 88799821 G A PIEZO1 Silent p.F843F 0.22 TCGA-AO-A12D-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.29 TCGA-AO-A12D-01 18 19019528 19019528 C T GREB1L Silent p.S293S 0.16 TCGA-AO-A12D-01 18 74154973 74154973 C T ZNF516 Missense_Mutation p.R13Q 0.22 deleterious(0.03) possibly_damaging(0.663) TCGA-AO-A12D-01 19 41944151 41944151 C G ATP5SL Missense_Mutation p.E69Q 0.10 tolerated(1) benign(0.002) TCGA-AO-A12D-01 19 55715212 55715212 C A PTPRH Missense_Mutation p.C275F 0.04 unknown(0) TCGA-AO-A12D-01 19 9090227 9090227 C T MUC16 Missense_Mutation p.E530K 0.08 unknown(0) TCGA-AO-A12D-01 1 13716922 13716922 G A PRAMEF17 Missense_Mutation p.D137N 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-AO-A12D-01 1 159827754 159827754 G A VSIG8 Nonsense_Mutation p.R145* 0.09 TCGA-AO-A12D-01 1 231472063 231472063 C T EXOC8 Missense_Mutation p.D477N 0.06 tolerated(0.48) benign(0.015) TCGA-AO-A12D-01 1 231487090 231487090 G A SPRTN Missense_Mutation p.R164Q 0.08 tolerated(1) benign(0.011) TCGA-AO-A12D-01 1 247614573 247614573 G A OR2B11 Nonsense_Mutation p.R238* 0.21 TCGA-AO-A12D-01 1 61554153 61554153 C T NFIA Silent p.L165L 0.07 TCGA-AO-A12D-01 1 74833629 74833629 G A FPGT-TNNI3K Silent p.K548K 0.09 TCGA-AO-A12D-01 1 89732775 89732775 C G GBP5 Missense_Mutation p.E164Q 0.15 tolerated(0.1) benign(0.054) TCGA-AO-A12D-01 20 21329049 21329049 G A XRN2 Missense_Mutation p.R615Q 0.20 tolerated(0.39) benign(0.053) TCGA-AO-A12D-01 20 39802138 39802138 G A PLCG1 Missense_Mutation p.E1120K 0.11 deleterious(0.02) possibly_damaging(0.5) TCGA-AO-A12D-01 21 47821627 47821627 G A PCNT Missense_Mutation p.E1652K 0.16 possibly_damaging(0.651) TCGA-AO-A12D-01 22 26747047 26747047 G A SEZ6L Missense_Mutation p.D813N 0.09 deleterious(0.04) benign(0.031) TCGA-AO-A12D-01 22 26747057 26747057 C A SEZ6L Missense_Mutation p.T816N 0.11 tolerated(0.31) benign(0.046) TCGA-AO-A12D-01 2 107049611 107049611 G A RGPD3 Missense_Mutation p.S779F 0.08 deleterious(0) benign(0.029) TCGA-AO-A12D-01 2 1500429 1500429 G A TPO Missense_Mutation p.G760R 0.13 deleterious(0.04) possibly_damaging(0.814) TCGA-AO-A12D-01 2 233899650 233899650 C T NEU2 Silent p.T342T 0.06 TCGA-AO-A12D-01 2 65299249 65299249 C T CEP68 Missense_Mutation p.S340F 0.10 deleterious(0) probably_damaging(1) TCGA-AO-A12D-01 2 73452075 73452075 T G SMYD5 Missense_Mutation p.I341S 0.09 deleterious(0) probably_damaging(1) TCGA-AO-A12D-01 2 97427205 97427205 G A CNNM4 Missense_Mutation p.D157N 0.09 tolerated(0.27) benign(0.003) TCGA-AO-A12D-01 3 112066517 112066517 G A CD200 Silent p.G203G 0.10 TCGA-AO-A12D-01 3 158376754 158376754 G A GFM1 Missense_Mutation p.G376E 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A12D-01 3 167000193 167000193 C A ZBBX Missense_Mutation p.R696L 0.09 tolerated(0.07) possibly_damaging(0.456) TCGA-AO-A12D-01 3 180687950 180687950 C G FXR1 Silent p.L469L 0.30 TCGA-AO-A12D-01 3 97185269 97185269 C G EPHA6 Intron 0.10 TCGA-AO-A12D-01 4 13605938 13605938 G A BOD1L1 Silent p.I862I 0.15 TCGA-AO-A12D-01 4 158065056 158065056 C T GLRB Silent p.L283L 0.14 TCGA-AO-A12D-01 4 55141065 55141065 G A PDGFRA Missense_Mutation p.E571K 0.25 deleterious(0) probably_damaging(0.996) TCGA-AO-A12D-01 5 140203377 140203377 C A PCDHA5 Missense_Mutation p.Q673K 0.19 deleterious_low_confidence(0.02) benign(0.098) TCGA-AO-A12D-01 5 154395738 154395738 C G KIF4B Missense_Mutation p.I773M 0.08 tolerated(0.06) benign(0.058) TCGA-AO-A12D-01 5 169310560 169310560 G A FAM196B Missense_Mutation p.L115F 0.16 deleterious(0) probably_damaging(0.999) TCGA-AO-A12D-01 5 179221156 179221156 C G LTC4S Intron 0.09 TCGA-AO-A12D-01 5 35039475 35039475 C A AGXT2 Missense_Mutation p.D106Y 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A12D-01 6 107390228 107390228 C T BEND3 Missense_Mutation p.D723N 0.16 tolerated(0.08) benign(0.016) TCGA-AO-A12D-01 6 143091478 143091478 G A HIVEP2 Silent p.Y1466Y 0.17 TCGA-AO-A12D-01 6 90604277 90604277 C T GJA10 Silent p.F30F 0.07 TCGA-AO-A12D-01 7 100088184 100088184 C T NYAP1 Missense_Mutation p.P664S 0.26 tolerated(0.09) benign(0.06) TCGA-AO-A12D-01 7 132937919 132937919 C T EXOC4 Missense_Mutation p.S21L 0.11 deleterious(0) probably_damaging(0.982) TCGA-AO-A12D-01 7 31735210 31735210 G A PPP1R17 Silent p.A70A 0.08 TCGA-AO-A12D-01 7 6210581 6210581 G A CYTH3 Silent p.I197I 0.10 TCGA-AO-A12D-01 7 81689778 81689778 G A CACNA2D1 Missense_Mutation p.T282I 0.09 deleterious(0) possibly_damaging(0.628) TCGA-AO-A12D-01 8 117954987 117954987 C T AARD 3'UTR 0.09 TCGA-AO-A12D-01 8 67040682 67040682 C A TRIM55 Silent p.I104I 0.11 TCGA-AO-A12D-01 8 70591657 70591657 G T SLCO5A1 Missense_Mutation p.F660L 0.10 tolerated(0.71) benign(0.013) TCGA-AO-A12D-01 9 101900249 101900249 A T TGFBR1 Missense_Mutation p.E228V 0.18 deleterious(0) possibly_damaging(0.822) TCGA-AO-A12D-01 9 117085971 117085971 C T ORM1 Missense_Mutation p.S48L 0.03 deleterious(0) probably_damaging(0.996) TCGA-AO-A12D-01 9 34125232 34125232 G A DCAF12 Missense_Mutation p.P41L 0.28 tolerated(0.18) benign(0.003) TCGA-AO-A12D-01 X 123518516 123518516 C T TENM1 Missense_Mutation p.V2089I 0.33 tolerated(0.25) benign(0.298) TCGA-AO-A12D-01 X 47270116 47270116 G C ZNF157 Missense_Mutation p.L79F 0.14 tolerated(0.05) probably_damaging(0.997) TCGA-AO-A12D-01 X 47307056 47307056 G A ZNF41 Missense_Mutation p.R705C 0.14 tolerated(0.19) benign(0.01) TCGA-AO-A12E-01 10 1088646 1088646 C T IDI1 Missense_Mutation p.E155K 0.16 deleterious(0.02) possibly_damaging(0.896) TCGA-AO-A12E-01 10 124753899 124753899 G A IKZF5 Silent p.I219I 0.23 TCGA-AO-A12E-01 10 31139222 31139222 C - ZNF438 Frame_Shift_Del p.A38Hfs*9 0.19 TCGA-AO-A12E-01 10 69692462 69692462 C T HERC4 Silent p.A918A 0.23 TCGA-AO-A12E-01 10 71665573 71665573 C T COL13A1 Missense_Mutation p.R316W 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-AO-A12E-01 10 95191210 95191210 C T MYOF Silent p.P100P 0.32 TCGA-AO-A12E-01 11 120925823 120925823 G A TBCEL Missense_Mutation p.C173Y 0.13 tolerated(0.22) benign(0.009) TCGA-AO-A12E-01 12 124008109 124008109 C T RILPL1 Silent p.K131K 0.14 TCGA-AO-A12E-01 12 56092319 56092319 C T ITGA7 Missense_Mutation p.R351H 0.21 deleterious(0) probably_damaging(0.979) TCGA-AO-A12E-01 12 6701926 6701926 G T CHD4 Missense_Mutation p.P904T 0.17 deleterious(0) probably_damaging(0.975) TCGA-AO-A12E-01 13 21357913 21357914 TT - XPO4 Frame_Shift_Del p.K1135Efs*26 0.33 TCGA-AO-A12E-01 14 93412768 93412768 C A ITPK1 Missense_Mutation p.R270L 0.17 deleterious(0) benign(0.136) TCGA-AO-A12E-01 17 38145029 38145029 G T PSMD3 Missense_Mutation p.A215S 0.17 tolerated(1) benign(0.007) TCGA-AO-A12E-01 17 61769113 61769113 G A MAP3K3 Silent p.L486L 0.15 TCGA-AO-A12E-01 19 35850292 35850292 G C FFAR3 Missense_Mutation p.G167A 0.14 tolerated(0.58) benign(0.021) TCGA-AO-A12E-01 1 201380613 201380613 G A TNNI1 Missense_Mutation p.R110C 0.09 deleterious(0) probably_damaging(0.986) TCGA-AO-A12E-01 1 67306238 67306238 C T WDR78 Missense_Mutation p.A470T 0.27 deleterious(0.01) benign(0.139) TCGA-AO-A12E-01 20 31659972 31659972 C T BPIFB3 Silent p.N441N 0.34 TCGA-AO-A12E-01 22 50277363 50277363 A T ZBED4 Missense_Mutation p.D18V 0.31 deleterious_low_confidence(0.01) benign(0.002) TCGA-AO-A12E-01 2 214181974 214181974 C T SPAG16 Missense_Mutation p.L144F 0.20 tolerated(0.7) benign(0.005) TCGA-AO-A12E-01 3 40554007 40554007 G T ZNF620 Splice_Site p.X89_splice 0.24 TCGA-AO-A12E-01 4 123268873 123268873 C G KIAA1109 Missense_Mutation p.S4356R 0.21 benign(0.025) TCGA-AO-A12E-01 5 150946277 150946277 G C FAT2 Missense_Mutation p.A739G 0.21 probably_damaging(1) TCGA-AO-A12E-01 5 153795448 153795448 G A GALNT10 Missense_Mutation p.D537N 0.15 tolerated(0.22) probably_damaging(0.997) TCGA-AO-A12E-01 5 64957916 64957916 A G TRAPPC13 Missense_Mutation p.I313V 0.43 tolerated(0.33) benign(0.007) TCGA-AO-A12E-01 5 70818170 70818170 C T BDP1 Silent p.F1682F 0.24 TCGA-AO-A12E-01 6 152551687 152551687 A T SYNE1 Missense_Mutation p.C7064S 0.31 possibly_damaging(0.806) TCGA-AO-A12E-01 7 105733552 105733553 AA - SYPL1 Frame_Shift_Del p.L163Vfs*10 0.23 TCGA-AO-A12E-01 7 45006283 45006283 C T MYO1G Missense_Mutation p.R646Q 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-AO-A12E-01 8 101020624 101020624 C T RGS22 Silent p.S780S 0.18 TCGA-AO-A12E-01 8 68346441 68346441 T C CPA6 Silent p.T291T 0.19 TCGA-AO-A12E-01 8 95869095 95869095 A G INTS8 Missense_Mutation p.M615V 0.19 tolerated(0.59) benign(0.031) TCGA-AO-A12E-01 9 104499565 104499565 G C GRIN3A Missense_Mutation p.Q233E 0.26 tolerated(0.39) benign(0.003) TCGA-AO-A12E-01 9 87570325 87570325 G A NTRK2 Missense_Mutation p.V689M 0.23 deleterious(0) probably_damaging(0.999) TCGA-AO-A12E-01 9 97203308 97203308 T G HIATL1 Missense_Mutation p.V146G 0.22 deleterious(0) benign(0.129) TCGA-AO-A12E-01 X 31090073 31090073 C T FTHL17 5'UTR 0.17 TCGA-AO-A12F-01 11 101818866 101818866 A C KIAA1377 Missense_Mutation p.N167H 0.21 deleterious(0.02) benign(0.179) TCGA-AO-A12F-01 11 119056358 119056358 G T PDZD3 Intron 0.50 TCGA-AO-A12F-01 11 132290114 132290114 G T OPCML Silent p.L337L 0.82 TCGA-AO-A12F-01 11 3845190 3845190 C T PGAP2 Silent p.I142I 0.26 TCGA-AO-A12F-01 11 5632399 5632399 C T TRIM6 Missense_Mutation p.R460C 0.19 deleterious(0.02) possibly_damaging(0.811) TCGA-AO-A12F-01 12 122107317 122107317 C T MORN3 Missense_Mutation p.G25S 0.36 deleterious(0) probably_damaging(0.995) TCGA-AO-A12F-01 13 38172818 38172818 C T POSTN Missense_Mutation p.V16I 0.41 tolerated(0.42) benign(0.008) TCGA-AO-A12F-01 15 54435218 54435218 G C UNC13C Missense_Mutation p.S996T 0.22 tolerated_low_confidence(0.14) benign(0.001) TCGA-AO-A12F-01 17 10399397 10399397 C T MYH1 Missense_Mutation p.R1680H 0.89 deleterious(0.03) probably_damaging(1) TCGA-AO-A12F-01 17 39742881 39742881 T A KRT14 Missense_Mutation p.Y69F 0.50 tolerated(0.33) unknown(0) TCGA-AO-A12F-01 17 66033483 66033483 C T KPNA2 Missense_Mutation p.R29C 0.45 deleterious(0.02) benign(0.077) TCGA-AO-A12F-01 17 7606441 7606441 G C WRAP53 Missense_Mutation p.V467L 0.31 deleterious(0.03) benign(0.121) TCGA-AO-A12F-01 19 4513446 4513446 G A PLIN4 Missense_Mutation p.L162F 0.37 deleterious(0.01) possibly_damaging(0.822) TCGA-AO-A12F-01 19 45571725 45571725 G C CLASRP Silent p.A585A 0.24 TCGA-AO-A12F-01 19 53385122 53385122 C G ZNF320 Missense_Mutation p.C86S 0.16 tolerated(0.23) benign(0.091) TCGA-AO-A12F-01 1 152277404 152277404 G A FLG Missense_Mutation p.R3320C 0.37 unknown(0) TCGA-AO-A12F-01 1 156146601 156146601 T A SEMA4A Missense_Mutation p.I700N 0.09 deleterious(0.01) benign(0.149) TCGA-AO-A12F-01 1 156756710 156756710 T G PRCC Missense_Mutation p.F276C 0.08 deleterious(0) probably_damaging(0.962) TCGA-AO-A12F-01 1 192778195 192778195 A G RGS2 5'UTR 0.14 TCGA-AO-A12F-01 1 201191930 201191930 C A IGFN1 Missense_Mutation p.T3422K 0.09 probably_damaging(0.915) TCGA-AO-A12F-01 1 205241032 205241065 CCAACGCGCGGGCGCTGCTGGGCAAGTTCATCAA - TMCC2 Frame_Shift_Del p.N638* 0.11 TCGA-AO-A12F-01 1 28598251 28598251 C T SESN2 Nonsense_Mutation p.R75* 0.22 TCGA-AO-A12F-01 20 11900400 11900400 C T BTBD3 Missense_Mutation p.A151V 0.18 deleterious(0.02) possibly_damaging(0.556) TCGA-AO-A12F-01 2 24080330 24080330 T C ATAD2B Missense_Mutation p.D508G 0.46 deleterious(0) probably_damaging(0.958) TCGA-AO-A12F-01 2 27799559 27799559 A C C2orf16 Silent p.G40G 0.08 TCGA-AO-A12F-01 3 12623389 12623389 G A MKRN2 Missense_Mutation p.D351N 0.16 deleterious(0) probably_damaging(1) TCGA-AO-A12F-01 4 154626370 154626370 C T TLR2 Missense_Mutation p.R771W 0.27 deleterious(0) probably_damaging(0.935) TCGA-AO-A12F-01 4 88537349 88537349 A G DSPP Missense_Mutation p.N1179D 0.26 unknown(0) TCGA-AO-A12F-01 5 154393338 154393338 G T KIF4B 5'UTR 0.69 TCGA-AO-A12F-01 5 172195858 172195858 G A DUSP1 Silent p.T337T 0.21 TCGA-AO-A12F-01 6 147006909 147006909 C T ADGB Missense_Mutation p.A419V 0.10 tolerated(0.08) probably_damaging(0.98) TCGA-AO-A12F-01 6 160875212 160875212 A T SLC22A3 3'Flank 0.17 TCGA-AO-A12F-01 6 167728785 167728785 G A UNC93A Missense_Mutation p.V407M 0.11 deleterious(0.01) possibly_damaging(0.781) TCGA-AO-A12F-01 6 18121861 18121861 G A NHLRC1 Missense_Mutation p.T326I 0.62 deleterious(0.01) benign(0.358) TCGA-AO-A12F-01 6 31670827 31670827 A T ABHD16A Intron 0.83 TCGA-AO-A12F-01 6 42832634 42832634 C - GLTSCR1L Frame_Shift_Del p.T897Kfs*8 0.21 TCGA-AO-A12F-01 8 101014555 101014555 G A RGS22 Missense_Mutation p.R889W 0.08 deleterious(0) probably_damaging(1) TCGA-AO-A12F-01 8 133899602 133899602 G A TG Missense_Mutation p.C662Y 0.16 deleterious(0) probably_damaging(1) TCGA-AO-A12F-01 8 22548379 22548379 C - EGR3 Frame_Shift_Del p.R259Afs*34 0.22 TCGA-AO-A12F-01 8 52252262 52252262 C T PXDNL Silent p.L1356L 0.10 TCGA-AO-A12F-01 9 1053792 1053792 C - DMRT2 Frame_Shift_Del p.S201Vfs*8 0.39 TCGA-AO-A12F-01 X 34960976 34960976 C T FAM47B Missense_Mutation p.P10S 0.82 deleterious(0.03) benign(0.055) TCGA-AO-A12F-01 X 70608656 70608656 A G TAF1 Missense_Mutation p.M900V 0.78 deleterious(0.03) benign(0.005) TCGA-AO-A12F-01 X 72673371 72673371 A G CDX4 Missense_Mutation p.E174G 0.27 deleterious(0) probably_damaging(0.996) TCGA-AO-A12G-01 10 121591004 121591005 CA - MCMBP Frame_Shift_Del p.V637Efs*4 0.18 TCGA-AO-A12G-01 10 55600150 55600151 - GGTGTA PCDH15 In_Frame_Ins p.Y1303_T1304dup 0.35 TCGA-AO-A12G-01 10 89653842 89653842 G - PTEN Frame_Shift_Del p.N48Tfs*6 0.33 TCGA-AO-A12G-01 11 293153 293153 G T ATHL1 Intron 0.56 TCGA-AO-A12G-01 11 64665325 64665325 C T ATG2A Silent p.Q1660Q 0.50 TCGA-AO-A12G-01 13 103386196 103386196 C T CCDC168 Silent p.V988V 0.30 TCGA-AO-A12G-01 14 22192319 22192319 G A TRAV3 Missense_Mutation p.V32I 0.38 tolerated(0.11) benign(0.032) TCGA-AO-A12G-01 14 35099146 35099146 G A SNX6 Silent p.D19D 0.40 TCGA-AO-A12G-01 15 75047325 75047325 G A CYP1A2 Missense_Mutation p.V483M 0.47 tolerated(0.09) benign(0.184) TCGA-AO-A12G-01 16 15718667 15718667 C T KIAA0430 Silent p.R743R 0.26 TCGA-AO-A12G-01 16 20996971 20996971 C T DNAH3 Missense_Mutation p.D2365N 0.40 tolerated(0.12) benign(0.147) TCGA-AO-A12G-01 17 16638032 16638032 A T CCDC144A Missense_Mutation p.D816V 0.62 deleterious(0) benign(0.341) TCGA-AO-A12G-01 17 51900732 51900732 C T KIF2B Missense_Mutation p.T113M 0.42 tolerated(0.15) benign(0.052) TCGA-AO-A12G-01 17 67246622 67246622 C T ABCA5 Missense_Mutation p.R1559H 0.38 tolerated(0.1) benign(0.005) TCGA-AO-A12G-01 17 7578505 7578516 GGGCAGGTCTTG - TP53 In_Frame_Del p.K139_P142del 0.39 TCGA-AO-A12G-01 18 28926019 28926019 G C DSG1 Missense_Mutation p.G653A 0.37 tolerated(0.1) benign(0.203) TCGA-AO-A12G-01 19 58639594 58639594 G A ZNF329 Missense_Mutation p.P426L 0.56 deleterious(0) probably_damaging(1) TCGA-AO-A12G-01 1 11317205 11317205 C A MTOR Nonsense_Mutation p.E97* 0.36 TCGA-AO-A12G-01 1 149884873 149884873 G C SV2A Missense_Mutation p.L174V 0.17 deleterious(0) probably_damaging(0.998) TCGA-AO-A12G-01 1 214818057 214818057 T C CENPF Missense_Mutation p.V1715A 0.24 benign(0.004) TCGA-AO-A12G-01 1 39853637 39853637 T A MACF1 Silent p.S2979S 0.13 TCGA-AO-A12G-01 1 55059671 55059671 A G ACOT11 Missense_Mutation p.K144E 0.30 tolerated(0.84) benign(0.009) TCGA-AO-A12G-01 1 78338700 78338701 - T FAM73A Frame_Shift_Ins p.A528Cfs*8 0.25 TCGA-AO-A12G-01 1 86430711 86430711 G A COL24A1 Missense_Mutation p.P833L 0.38 tolerated(0.09) probably_damaging(0.941) TCGA-AO-A12G-01 21 31311822 31311822 C - GRIK1 5'UTR 0.26 TCGA-AO-A12G-01 2 190044314 190044314 G A COL5A2 Missense_Mutation p.A6V 0.08 benign(0.001) TCGA-AO-A12G-01 2 212289007 212289007 C T ERBB4 Silent p.L913L 0.34 TCGA-AO-A12G-01 2 225651833 225651833 T C DOCK10 Missense_Mutation p.Y1854C 0.37 deleterious(0.04) probably_damaging(0.971) TCGA-AO-A12G-01 3 128186030 128186030 G A DNAJB8 5'Flank 0.38 TCGA-AO-A12G-01 3 9475958 9475958 C G SETD5 Intron 0.18 TCGA-AO-A12G-01 5 43161509 43161509 T C ZNF131 Missense_Mutation p.I177T 0.33 deleterious(0.05) benign(0.022) TCGA-AO-A12G-01 6 126176529 126176529 C T NCOA7 Intron 0.32 TCGA-AO-A12G-01 6 161162411 161162411 G A PLG Missense_Mutation p.R696Q 0.46 tolerated(0.63) benign(0.01) TCGA-AO-A12G-01 6 90564540 90564540 C T CASP8AP2 RNA 0.27 TCGA-AO-A12G-01 7 128488936 128488936 G A FLNC Silent p.R1609R 0.11 TCGA-AO-A12G-01 7 158716295 158716295 T C WDR60 Missense_Mutation p.F710L 0.31 tolerated(0.34) possibly_damaging(0.483) TCGA-AO-A12G-01 7 22534400 22534400 G A STEAP1B Silent p.N25N 0.06 TCGA-AO-A12G-01 7 42084998 42084998 G A GLI3 Missense_Mutation p.L271F 0.32 deleterious(0.05) benign(0.03) TCGA-AO-A12G-01 7 42085091 42085091 G A GLI3 Nonsense_Mutation p.Q240* 0.38 TCGA-AO-A12G-01 7 55221773 55221773 A G EGFR Missense_Mutation p.T273A 0.32 tolerated(0.43) benign(0.038) TCGA-AO-A12G-01 7 71252675 71252675 G A CALN1 3'UTR 0.47 TCGA-AO-A12G-01 8 91937790 91937790 G A NECAB1 Silent p.L174L 0.63 TCGA-AO-A12G-01 9 125486770 125486770 T C OR1L4 Missense_Mutation p.S168P 0.37 deleterious(0.01) benign(0.042) TCGA-AO-A12G-01 9 21818104 21818104 G A MTAP Missense_Mutation p.E84K 0.39 tolerated(0.1) possibly_damaging(0.472) TCGA-AO-A12G-01 9 34978067 34978067 C T KIAA1045 Missense_Mutation p.R388C 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-AO-A12G-01 9 5773058 5773058 G A KIAA1432 Missense_Mutation p.D1321N 0.47 tolerated(0.17) benign(0.253) TCGA-AO-A12G-01 9 5774097 5774097 G C KIAA1432 Missense_Mutation p.E1375Q 0.27 tolerated(0.12) possibly_damaging(0.904) TCGA-AO-A12G-01 X 50659109 50659109 G C BMP15 Missense_Mutation p.L227F 0.39 tolerated(0.13) benign(0.019) TCGA-AO-A12G-01 X 95993750 95993751 - A DIAPH2 Frame_Shift_Ins p.M113Nfs*8 0.21 TCGA-AO-A12H-01 10 45652359 45652359 A G RP11-445N18.7 RNA 0.38 TCGA-AO-A12H-01 11 34113522 34113522 C G CAPRIN1 Missense_Mutation p.Q542E 0.39 tolerated(0.23) possibly_damaging(0.872) TCGA-AO-A12H-01 11 94730906 94730906 A T KDM4D Nonsense_Mutation p.K124* 0.36 TCGA-AO-A12H-01 12 1289751 1289751 A T ERC1 Missense_Mutation p.S595C 0.28 tolerated(0.07) probably_damaging(0.967) TCGA-AO-A12H-01 12 51133229 51133229 A C DIP2B Missense_Mutation p.Y1405S 0.48 deleterious(0.01) possibly_damaging(0.902) TCGA-AO-A12H-01 12 7867799 7867799 G A DPPA3 Missense_Mutation p.E35K 0.36 tolerated(0.16) benign(0.008) TCGA-AO-A12H-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.48 deleterious(0) probably_damaging(0.999) TCGA-AO-A12H-01 14 22294229 22294229 T C TRAV10 Silent p.C111C 0.41 TCGA-AO-A12H-01 15 23811399 23811399 C T MKRN3 Missense_Mutation p.A157V 0.10 tolerated(0.24) possibly_damaging(0.485) TCGA-AO-A12H-01 15 34078003 34078003 A G RYR3 Missense_Mutation p.M3137V 0.37 probably_damaging(0.989) TCGA-AO-A12H-01 16 51175176 51175176 G A SALL1 Silent p.I319I 0.31 TCGA-AO-A12H-01 16 71701217 71701217 G A PHLPP2 Missense_Mutation p.L550F 0.11 deleterious(0) probably_damaging(0.937) TCGA-AO-A12H-01 16 74368869 74368869 C T RP11-252A24.2 3'Flank 0.06 TCGA-AO-A12H-01 17 29562668 29562668 C T NF1 Missense_Mutation p.R1250W 0.31 deleterious(0) probably_damaging(0.928) TCGA-AO-A12H-01 17 33592829 33592829 G A SLFN5 Silent p.P866P 0.36 TCGA-AO-A12H-01 17 41020126 41020126 G C AOC4P RNA 0.30 TCGA-AO-A12H-01 17 4788835 4788835 T A MINK1 Missense_Mutation p.I189N 0.37 deleterious(0) possibly_damaging(0.639) TCGA-AO-A12H-01 1 16953690 16953690 G A CROCCP2 3'Flank 0.15 TCGA-AO-A12H-01 1 185153956 185153956 G A SWT1 Missense_Mutation p.R441H 0.47 tolerated(1) benign(0.001) TCGA-AO-A12H-01 1 224607232 224607232 C A WDR26 Missense_Mutation p.D284Y 0.43 deleterious(0) possibly_damaging(0.885) TCGA-AO-A12H-01 20 34240797 34240817 AGGGGCACTTCCAAGACCAGG - RBM12 In_Frame_Del p.P810_P816del 0.35 TCGA-AO-A12H-01 22 26884108 26884108 G A SRRD Missense_Mutation p.V122M 0.41 tolerated(0.08) benign(0.071) TCGA-AO-A12H-01 2 125547589 125547589 C T CNTNAP5 Missense_Mutation p.P954S 0.36 tolerated(0.18) probably_damaging(0.999) TCGA-AO-A12H-01 3 50598482 50598482 G A C3orf18 Missense_Mutation p.R92C 0.14 deleterious(0) probably_damaging(0.999) TCGA-AO-A12H-01 6 133427265 133427265 T C LINC00326 RNA 0.09 TCGA-AO-A12H-01 6 147073842 147073842 G A ADGB Missense_Mutation p.S1181N 0.37 tolerated(0.05) possibly_damaging(0.742) TCGA-AO-A12H-01 7 21639512 21639512 C T DNAH11 Silent p.H925H 0.36 TCGA-AO-A12H-01 7 76054396 76054396 G A ZP3 Missense_Mutation p.V39I 0.17 tolerated(0.15) benign(0.001) TCGA-AO-A12H-01 8 21862692 21862692 G A XPO7 3'UTR 0.12 TCGA-AO-A12H-01 X 105178374 105178374 A G NRK Missense_Mutation p.N1147S 0.06 tolerated(1) benign(0) TCGA-AO-A12H-01 X 125299410 125299410 G A DCAF12L2 Silent p.T166T 0.39 TCGA-AO-A12H-01 X 41084197 41084198 - A USP9X Frame_Shift_Ins p.S2319Kfs*2 0.31 TCGA-AO-A1KO-01 11 129751713 129751713 T A NFRKB Silent p.P434P 0.29 TCGA-AO-A1KO-01 13 25831892 25831892 A T MTMR6 Silent p.A317A 0.13 TCGA-AO-A1KO-01 15 85164374 85164374 C T ZSCAN2 Silent p.S316S 0.16 TCGA-AO-A1KO-01 1 179815620 179815620 A G TOR1AIP2 Silent p.A333A 0.08 TCGA-AO-A1KO-01 1 193045047 193045047 A G TROVE2 Silent p.L226L 0.12 TCGA-AO-A1KO-01 2 18736877 18736877 G C RDH14 Nonsense_Mutation p.Y197* 0.10 TCGA-AO-A1KO-01 2 214239790 214239790 C T SPAG16 Missense_Mutation p.R297C 0.11 deleterious(0.02) possibly_damaging(0.517) TCGA-AO-A1KO-01 2 225639715 225639715 T A DOCK10 Missense_Mutation p.I1974F 0.10 deleterious(0) possibly_damaging(0.551) TCGA-AO-A1KO-01 6 14131926 14131926 A T CD83 Missense_Mutation p.Q110L 0.08 tolerated(0.36) benign(0.17) TCGA-AO-A1KO-01 X 10046872 10046872 A G WWC3 Missense_Mutation p.D85G 0.10 deleterious(0) probably_damaging(0.933) TCGA-AO-A1KR-01 10 11299805 11299805 A C CELF2 Missense_Mutation p.I170L 0.32 deleterious(0.01) possibly_damaging(0.838) TCGA-AO-A1KR-01 10 97096374 97096374 C G SORBS1 Silent p.L1181L 0.25 TCGA-AO-A1KR-01 11 103270591 103270592 AA TATT DYNC2H1 Frame_Shift_Ins p.L4126Ffs*24 0.13 TCGA-AO-A1KR-01 11 111597683 111597683 G T PPP2R1B 3'UTR 0.13 TCGA-AO-A1KR-01 11 113269704 113269715 AGCGGGCCCTTC - ANKK1 In_Frame_Del p.R339_Q342del 0.34 TCGA-AO-A1KR-01 11 57099707 57099707 G A SSRP1 Missense_Mutation p.S307L 0.29 deleterious(0.04) benign(0.046) TCGA-AO-A1KR-01 11 57947042 57947042 C G OR9Q1 Missense_Mutation p.N42K 0.07 deleterious(0) probably_damaging(0.973) TCGA-AO-A1KR-01 11 92086793 92086793 G T FAT3 Silent p.G505G 0.22 TCGA-AO-A1KR-01 12 120150414 120150414 C A CIT Missense_Mutation p.A1556S 0.20 tolerated(0.09) benign(0.01) TCGA-AO-A1KR-01 12 124104154 124104155 AA - DDX55 Frame_Shift_Del p.K506Nfs*4 0.18 TCGA-AO-A1KR-01 12 50524370 50524370 C G CERS5 Silent p.R379R 0.11 TCGA-AO-A1KR-01 12 7802275 7802275 T C APOBEC1 Silent p.L193L 0.15 TCGA-AO-A1KR-01 13 114773047 114773047 G T RASA3 Missense_Mutation p.D568E 0.13 tolerated(1) possibly_damaging(0.472) TCGA-AO-A1KR-01 13 51948544 51948544 A C INTS6 Missense_Mutation p.V635G 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-AO-A1KR-01 14 96851983 96851983 C T GSKIP Nonsense_Mutation p.Q128* 0.16 TCGA-AO-A1KR-01 15 40265856 40265856 T C EIF2AK4 Missense_Mutation p.F575S 0.28 tolerated(0.2) benign(0.001) TCGA-AO-A1KR-01 15 43378432 43378432 C A UBR1 Missense_Mutation p.D30Y 0.19 tolerated(0.1) benign(0.235) TCGA-AO-A1KR-01 16 129524 129524 G C MPG Missense_Mutation p.S47T 0.29 tolerated_low_confidence(0.07) benign(0.029) TCGA-AO-A1KR-01 16 23360076 23360076 G A SCNN1B Nonsense_Mutation p.W52* 0.21 TCGA-AO-A1KR-01 16 2763623 2763623 G A PRSS27 Silent p.Y195Y 0.22 TCGA-AO-A1KR-01 16 705776 705776 C T WDR90 Missense_Mutation p.P618L 0.62 deleterious(0.02) benign(0.022) TCGA-AO-A1KR-01 16 84514235 84514235 G A TLDC1 Missense_Mutation p.T386M 0.29 tolerated(0.06) possibly_damaging(0.66) TCGA-AO-A1KR-01 17 39724452 39724452 C T KRT9 Silent p.E452E 0.19 TCGA-AO-A1KR-01 17 41245615 41245617 AAC - BRCA1 In_Frame_Del p.C644del 0.33 TCGA-AO-A1KR-01 17 61735193 61735193 G C MAP3K3 Missense_Mutation p.A134P 0.15 deleterious(0) probably_damaging(0.992) TCGA-AO-A1KR-01 17 64876780 64876780 G A CACNG5 Silent p.L130L 0.14 TCGA-AO-A1KR-01 17 73723282 73723282 C A ITGB4 Silent p.R29R 0.24 TCGA-AO-A1KR-01 17 7468905 7468905 G C SENP3 Splice_Site p.X405_splice 0.43 TCGA-AO-A1KR-01 17 76482127 76482127 T A DNAH17 Missense_Mutation p.Y2383F 0.19 possibly_damaging(0.447) TCGA-AO-A1KR-01 17 78183476 78183476 A G SGSH 3'UTR 0.36 TCGA-AO-A1KR-01 17 8045190 8045190 C T PER1 Missense_Mutation p.R1178Q 0.18 tolerated(0.07) probably_damaging(0.993) TCGA-AO-A1KR-01 18 12802115 12802115 A C PTPN2 Silent p.S298S 0.07 TCGA-AO-A1KR-01 18 23612480 23612480 A G SS18 Silent p.G371G 0.30 TCGA-AO-A1KR-01 18 28991149 28991149 T C DSG4 Missense_Mutation p.L717P 0.10 tolerated(0.28) benign(0.004) TCGA-AO-A1KR-01 18 30092638 30092638 G A WBP11P1 RNA 0.24 TCGA-AO-A1KR-01 18 60243815 60243815 C G ZCCHC2 3'UTR 0.19 TCGA-AO-A1KR-01 19 12816348 12816348 C T TNPO2 Silent p.Q607Q 0.28 TCGA-AO-A1KR-01 19 13325051 13325051 T A CACNA1A Missense_Mutation p.E1979V 0.25 possibly_damaging(0.607) TCGA-AO-A1KR-01 19 44934254 44934254 A G ZNF229 Silent p.P234P 0.15 TCGA-AO-A1KR-01 19 49656737 49656737 G C HRC Missense_Mutation p.I586M 0.27 deleterious(0) possibly_damaging(0.901) TCGA-AO-A1KR-01 19 52090259 52090259 C T ZNF175 Silent p.D225D 0.28 TCGA-AO-A1KR-01 19 54299149 54299149 C T NLRP12 Missense_Mutation p.R1021Q 0.30 tolerated(0.08) unknown(0) TCGA-AO-A1KR-01 19 55597838 55597838 C G EPS8L1 Missense_Mutation p.R577G 0.22 tolerated(0.25) benign(0.024) TCGA-AO-A1KR-01 1 108292204 108292204 T G VAV3 Missense_Mutation p.L424F 0.13 deleterious(0) probably_damaging(1) TCGA-AO-A1KR-01 1 110121878 110121878 T C GNAI3 Missense_Mutation p.M119T 0.27 deleterious(0.03) benign(0.124) TCGA-AO-A1KR-01 1 158608032 158608032 C G SPTA1 Splice_Site p.X1661_splice 0.26 TCGA-AO-A1KR-01 1 158725496 158725496 G C OR6K6 Missense_Mutation p.W297C 0.16 tolerated(0.09) probably_damaging(0.932) TCGA-AO-A1KR-01 1 167064178 167064178 G A DUSP27 Missense_Mutation p.R31Q 0.21 deleterious(0.01) benign(0.207) TCGA-AO-A1KR-01 1 176926869 176926869 C A ASTN1 Missense_Mutation p.C611F 0.15 deleterious(0) probably_damaging(0.984) TCGA-AO-A1KR-01 1 200377915 200377915 G A ZNF281 Missense_Mutation p.H307Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-AO-A1KR-01 1 208224737 208224737 G C PLXNA2 Missense_Mutation p.P1009A 0.18 tolerated(0.28) benign(0.002) TCGA-AO-A1KR-01 1 210415039 210415039 T C SERTAD4 Missense_Mutation p.I143T 0.30 tolerated(0.09) probably_damaging(0.99) TCGA-AO-A1KR-01 1 223286092 223286092 C A TLR5 Silent p.L94L 0.18 TCGA-AO-A1KR-01 1 237015844 237015844 A C MTR Silent p.I573I 0.22 TCGA-AO-A1KR-01 1 26658074 26658074 T C AIM1L Missense_Mutation p.D533G 0.42 tolerated(0.07) possibly_damaging(0.559) TCGA-AO-A1KR-01 1 66833528 66833528 G A PDE4B Missense_Mutation p.D512N 0.20 deleterious(0.01) possibly_damaging(0.808) TCGA-AO-A1KR-01 1 70621394 70621394 G C LRRC40 Missense_Mutation p.Q436E 0.22 tolerated(0.22) benign(0.002) TCGA-AO-A1KR-01 1 91989743 91989743 G T CDC7 Missense_Mutation p.K492N 0.18 tolerated(0.41) benign(0.008) TCGA-AO-A1KR-01 20 49551657 49551657 A G DPM1 3'UTR 0.21 TCGA-AO-A1KR-01 20 50701561 50701561 G A ZFP64 Silent p.A491A 0.18 TCGA-AO-A1KR-01 21 33711032 33711032 C A URB1 Silent p.P1498P 0.15 TCGA-AO-A1KR-01 21 45670749 45670749 C A DNMT3L Missense_Mutation p.V285L 0.27 tolerated(0.31) benign(0.107) TCGA-AO-A1KR-01 22 26884128 26884128 A C SRRD Silent p.P128P 0.17 TCGA-AO-A1KR-01 2 1079205 1079205 C T SNTG2 Missense_Mutation p.T25M 0.23 deleterious(0) benign(0.287) TCGA-AO-A1KR-01 2 172411303 172411303 C T CYBRD1 Missense_Mutation p.A276V 0.40 tolerated_low_confidence(0.15) benign(0.021) TCGA-AO-A1KR-01 2 190530910 190530910 G C ASNSD1 Missense_Mutation p.D18H 0.23 tolerated(0.12) benign(0.027) TCGA-AO-A1KR-01 2 208477909 208477909 C T METTL21A Missense_Mutation p.C173Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-AO-A1KR-01 2 43924309 43924309 G C PLEKHH2 Splice_Site p.X168_splice 0.24 TCGA-AO-A1KR-01 2 65315695 65315695 C A RAB1A Missense_Mutation p.G184C 0.18 deleterious(0) benign(0.246) TCGA-AO-A1KR-01 2 80773146 80773146 G C CTNNA2 Missense_Mutation p.V500L 0.30 tolerated(0.14) possibly_damaging(0.448) TCGA-AO-A1KR-01 3 130743882 130743882 G T ASTE1 Missense_Mutation p.T90K 0.18 tolerated(0.88) benign(0.004) TCGA-AO-A1KR-01 3 172365724 172365724 G C NCEH1 Missense_Mutation p.R139G 0.09 deleterious(0) possibly_damaging(0.822) TCGA-AO-A1KR-01 3 178951957 178951957 G A PIK3CA Missense_Mutation p.M1004I 0.42 deleterious(0.01) benign(0.331) TCGA-AO-A1KR-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.43 tolerated(0.11) possibly_damaging(0.529) TCGA-AO-A1KR-01 4 53731600 53731600 C T RASL11B Silent p.S125S 0.23 TCGA-AO-A1KR-01 4 69512933 69512933 C G UGT2B15 Silent p.V494V 0.20 TCGA-AO-A1KR-01 4 7677926 7677926 G A SORCS2 Silent p.A437A 0.30 TCGA-AO-A1KR-01 4 89577057 89577057 G A HERC3 Missense_Mutation p.G314R 0.14 deleterious(0) possibly_damaging(0.535) TCGA-AO-A1KR-01 5 140558924 140558924 A T PCDHB8 Missense_Mutation p.N437Y 0.11 deleterious_low_confidence(0) benign(0.161) TCGA-AO-A1KR-01 5 15500794 15500794 G C FBXL7 Silent p.A3A 0.14 TCGA-AO-A1KR-01 5 32420120 32420120 C A ZFR Missense_Mutation p.V76F 0.20 deleterious(0) probably_damaging(0.954) TCGA-AO-A1KR-01 5 78338302 78338302 A T DMGDH Missense_Mutation p.F333I 0.82 deleterious(0) probably_damaging(0.999) TCGA-AO-A1KR-01 5 870657 870657 C T BRD9 Missense_Mutation p.V486I 0.16 tolerated(0.37) benign(0.004) TCGA-AO-A1KR-01 6 138197148 138197148 G C TNFAIP3 Missense_Mutation p.S217T 0.22 deleterious(0.01) possibly_damaging(0.822) TCGA-AO-A1KR-01 7 23827704 23827704 C T STK31 Missense_Mutation p.R865C 0.29 deleterious(0) probably_damaging(1) TCGA-AO-A1KR-01 8 104897774 104897774 G A RIMS2 Missense_Mutation p.S316N 0.26 tolerated_low_confidence(0.52) benign(0.001) TCGA-AO-A1KR-01 8 75227511 75227511 C T JPH1 Missense_Mutation p.D242N 0.25 tolerated(0.12) benign(0.284) TCGA-AO-A1KR-01 8 95504889 95504889 A T KIAA1429 Missense_Mutation p.I1600K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-AO-A1KR-01 9 139379382 139379382 G A C9orf163 Nonsense_Mutation p.W161* 0.29 TCGA-AO-A1KR-01 X 117538337 117538337 G C WDR44 Missense_Mutation p.K437N 0.11 tolerated(0.07) benign(0.298) TCGA-AO-A1KR-01 X 34148765 34148765 C T FAM47A Missense_Mutation p.R544H 0.34 tolerated(0.44) possibly_damaging(0.715) TCGA-AO-A1KR-01 X 36007728 36007728 T C CXorf22 3'UTR 0.39 TCGA-AO-A1KR-01 X 48372917 48372917 C T PORCN Silent p.L284L 0.58 TCGA-AO-A1KT-01 10 104230835 104230835 G A TMEM180 Missense_Mutation p.R222Q 0.08 tolerated(0.58) benign(0.099) TCGA-AO-A1KT-01 10 13222513 13222513 T A MCM10 Missense_Mutation p.I280N 0.27 deleterious(0) possibly_damaging(0.691) TCGA-AO-A1KT-01 10 49941998 49941998 T C WDFY4 Silent p.G535G 0.06 TCGA-AO-A1KT-01 11 108160511 108160538 TCACTATATCAACCAAAGGTAAATAACA - ATM Splice_Site p.X1474_splice 0.61 TCGA-AO-A1KT-01 11 112020809 112020809 T A IL18 Missense_Mutation p.D71V 0.54 deleterious(0) probably_damaging(0.996) TCGA-AO-A1KT-01 11 71712520 71712520 G A IL18BP Silent p.L143L 0.58 TCGA-AO-A1KT-01 12 4796146 4796146 G A NDUFA9 Missense_Mutation p.E336K 0.40 deleterious(0) benign(0.157) TCGA-AO-A1KT-01 12 49445333 49445333 C T KMT2D Silent p.P711P 0.30 TCGA-AO-A1KT-01 14 23855313 23855313 C A MYH6 Missense_Mutation p.V1663F 0.24 tolerated(0.14) benign(0.278) TCGA-AO-A1KT-01 16 27374816 27374816 G C IL4R Missense_Mutation p.A715P 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-AO-A1KT-01 16 28177893 28177893 A C XPO6 Silent p.T193T 0.50 TCGA-AO-A1KT-01 16 4042196 4042196 T G ADCY9 Missense_Mutation p.I720L 0.24 tolerated(0.99) benign(0.015) TCGA-AO-A1KT-01 17 26499547 26499547 A G NLK Missense_Mutation p.D351G 0.04 tolerated(0.06) possibly_damaging(0.733) TCGA-AO-A1KT-01 17 42636438 42636438 G A FZD2 Missense_Mutation p.R461H 0.56 deleterious(0) probably_damaging(0.999) TCGA-AO-A1KT-01 17 43585519 43585519 C T LRRC37A4P RNA 0.05 TCGA-AO-A1KT-01 19 1585126 1585126 C T MBD3 Silent p.T66T 0.50 TCGA-AO-A1KT-01 19 55489137 55489137 C T NLRP2 Nonsense_Mutation p.R115* 0.36 TCGA-AO-A1KT-01 19 9072310 9072310 A G MUC16 Missense_Mutation p.S5046P 0.58 unknown(0) TCGA-AO-A1KT-01 1 38489408 38489408 A T UTP11L 3'UTR 0.20 TCGA-AO-A1KT-01 1 94643037 94643037 G A ARHGAP29 Intron 0.44 TCGA-AO-A1KT-01 20 57430146 57430147 - C GNAS Frame_Shift_Ins p.N610Qfs*15 0.31 TCGA-AO-A1KT-01 20 656217 656217 A T SCRT2 Missense_Mutation p.I10N 0.67 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-AO-A1KT-01 21 40571242 40571242 T C BRWD1 Silent p.L1700L 0.27 TCGA-AO-A1KT-01 21 47681257 47681257 G A MCM3AP Missense_Mutation p.A1135V 0.04 tolerated(0.27) benign(0.008) TCGA-AO-A1KT-01 22 25124287 25124287 A T PIWIL3 Missense_Mutation p.Y597N 0.31 deleterious(0) probably_damaging(0.944) TCGA-AO-A1KT-01 22 46627967 46627967 G T PPARA Missense_Mutation p.M330I 0.33 tolerated(0.13) benign(0.166) TCGA-AO-A1KT-01 2 209136284 209136284 C G PIKFYVE Missense_Mutation p.A14G 0.35 tolerated_low_confidence(0.28) benign(0.05) TCGA-AO-A1KT-01 2 47249043 47249043 G A TTC7A Missense_Mutation p.G479R 0.14 deleterious(0.04) benign(0.067) TCGA-AO-A1KT-01 2 74475491 74475491 G A SLC4A5 Silent p.F592F 0.33 TCGA-AO-A1KT-01 3 112546236 112546236 A G CD200R1L Silent p.R136R 0.16 TCGA-AO-A1KT-01 3 153972529 153972529 G A ARHGEF26 Missense_Mutation p.V797I 0.31 tolerated(1) benign(0.001) TCGA-AO-A1KT-01 3 44488743 44488743 C A ZNF445 Missense_Mutation p.R807L 0.41 deleterious(0.03) unknown(0) TCGA-AO-A1KT-01 3 57458383 57458411 TTTGGCGTTTAGATTCCTACAAAAGAAAC - snoU13 5'Flank 0.27 TCGA-AO-A1KT-01 3 64527222 64527222 T C ADAMTS9 Missense_Mutation p.I1758V 0.04 tolerated(1) benign(0.003) TCGA-AO-A1KT-01 4 164247179 164247179 G C NPY1R Nonsense_Mutation p.Y176* 0.20 TCGA-AO-A1KT-01 4 436212 436212 T C ZNF721 Missense_Mutation p.I682V 0.29 deleterious(0.02) benign(0) TCGA-AO-A1KT-01 4 70460341 70460341 G C UGT2A1 Silent p.V552V 0.34 TCGA-AO-A1KT-01 5 156456763 156456763 C T HAVCR1 Missense_Mutation p.S359N 0.07 tolerated(1) benign(0.003) TCGA-AO-A1KT-01 5 178416347 178416347 C T GRM6 Missense_Mutation p.A358T 0.31 tolerated(0.16) benign(0.103) TCGA-AO-A1KT-01 5 73931216 73931216 G A ENC1 Silent p.H365H 0.41 TCGA-AO-A1KT-01 5 73931919 73931919 T A ENC1 Missense_Mutation p.D131V 0.34 tolerated(0.25) possibly_damaging(0.706) TCGA-AO-A1KT-01 5 81046829 81046829 G C SSBP2 Silent p.A11A 0.29 TCGA-AO-A1KT-01 6 151757558 151757559 - C RMND1 Intron 0.40 TCGA-AO-A1KT-01 7 151853312 151853312 G A KMT2C Silent p.A3930A 0.06 TCGA-AO-A1KT-01 8 106815010 106815010 C T ZFPM2 Silent p.S900S 0.18 TCGA-AO-A1KT-01 8 7721215 7721215 C T SPAG11A 3'UTR 0.26 TCGA-AO-A1KT-01 8 8747876 8747876 T C MFHAS1 Missense_Mutation p.Y898C 0.11 deleterious(0) possibly_damaging(0.72) TCGA-AO-A1KT-01 8 96166631 96166631 C T PLEKHF2 Missense_Mutation p.S120L 0.54 tolerated(0.19) benign(0.216) TCGA-AO-A1KT-01 8 97258550 97258550 T C MTERFD1 Silent p.E270E 0.23 TCGA-AO-A1KT-01 9 117848173 117848173 C A TNC Nonsense_Mutation p.E613* 0.12 TCGA-AO-A1KT-01 9 77339648 77339648 C T TRPM6 Missense_Mutation p.D1984N 0.20 deleterious(0.03) benign(0.003) TCGA-AO-A1KT-01 9 84202743 84202743 C A TLE1 Missense_Mutation p.R610S 0.55 deleterious(0) probably_damaging(1) TCGA-AO-A1KT-01 X 32459415 32459415 C T DMD Nonsense_Mutation p.W1268* 0.32 TCGA-AO-A1KT-01 X 48368217 48368217 C A PORCN Silent p.T3T 0.21 TCGA-AO-A1KT-01 X 48682594 48682594 A G HDAC6 Missense_Mutation p.I1157V 0.44 tolerated(1) benign(0.004) TCGA-AQ-A04H-01 10 8115878 8115879 - T GATA3 Frame_Shift_Ins p.S411Qfs*97 0.16 TCGA-AQ-A04H-01 11 212446 212446 G C RIC8A Missense_Mutation p.V334L 0.30 deleterious(0.01) possibly_damaging(0.729) TCGA-AQ-A04H-01 11 34160944 34160944 G T NAT10 Missense_Mutation p.R774L 0.56 deleterious(0) probably_damaging(0.912) TCGA-AQ-A04H-01 11 3845298 3845298 C T PGAP2 Silent p.F178F 0.27 TCGA-AQ-A04H-01 11 70202345 70202345 G A PPFIA1 Missense_Mutation p.R856H 0.10 deleterious(0.02) benign(0.024) TCGA-AQ-A04H-01 12 15800121 15800121 T C EPS8 Missense_Mutation p.H503R 0.21 tolerated(0.35) benign(0.013) TCGA-AQ-A04H-01 12 20766410 20766410 G A PDE3A Missense_Mutation p.V349I 0.22 deleterious(0.04) possibly_damaging(0.89) TCGA-AQ-A04H-01 12 49251827 49251827 G C RND1 Missense_Mutation p.I217M 0.23 tolerated(0.29) benign(0.125) TCGA-AQ-A04H-01 12 88442981 88442981 C T CEP290 Missense_Mutation p.V2474I 0.32 benign(0.001) TCGA-AQ-A04H-01 13 113439503 113439503 G T ATP11A Nonsense_Mutation p.E32* 0.43 TCGA-AQ-A04H-01 13 113771834 113771834 C T F7 Silent p.I243I 0.28 TCGA-AQ-A04H-01 14 51237255 51237255 G A NIN Nonsense_Mutation p.R429* 0.19 TCGA-AQ-A04H-01 14 57269058 57269058 G A OTX2 Nonsense_Mutation p.R97* 0.46 TCGA-AQ-A04H-01 14 80328161 80328161 G A NRXN3 Missense_Mutation p.D1014N 0.36 deleterious(0) benign(0) TCGA-AQ-A04H-01 14 86089263 86089263 C T FLRT2 Missense_Mutation p.R469C 0.38 deleterious(0.03) possibly_damaging(0.846) TCGA-AQ-A04H-01 16 3065517 3065517 G A CLDN6 Missense_Mutation p.A169V 0.32 deleterious(0.04) probably_damaging(0.949) TCGA-AQ-A04H-01 16 31343051 31343051 C T ITGAM 3'UTR 0.46 TCGA-AQ-A04H-01 16 31424209 31424209 G A ITGAD Silent p.A586A 0.42 TCGA-AQ-A04H-01 16 89291996 89291996 G A ZNF778 Missense_Mutation p.R93Q 0.24 tolerated(1) benign(0) TCGA-AQ-A04H-01 17 30980907 30980907 C T MYO1D Missense_Mutation p.R850Q 0.13 tolerated(0.51) benign(0.041) TCGA-AQ-A04H-01 17 34249590 34249590 C A RDM1 Missense_Mutation p.V220F 0.12 deleterious(0) probably_damaging(0.988) TCGA-AQ-A04H-01 17 40322182 40322182 C T KCNH4 Missense_Mutation p.V445M 0.56 deleterious(0) probably_damaging(0.979) TCGA-AQ-A04H-01 17 56690897 56690897 C T TEX14 Missense_Mutation p.R303Q 0.75 deleterious(0) probably_damaging(0.997) TCGA-AQ-A04H-01 17 57761344 57761344 C T CLTC Nonsense_Mutation p.Q1478* 0.12 TCGA-AQ-A04H-01 17 58234014 58234014 G A CA4 Missense_Mutation p.R69H 0.16 deleterious(0.05) benign(0.003) TCGA-AQ-A04H-01 17 7578259 7578259 A C TP53 Missense_Mutation p.V197G 0.72 deleterious(0) probably_damaging(1) TCGA-AQ-A04H-01 17 79770832 79770832 G A GCGR Intron 0.41 TCGA-AQ-A04H-01 18 10773432 10773432 G A PIEZO2 Silent p.S896S 0.50 TCGA-AQ-A04H-01 18 65180278 65180278 G A DSEL Missense_Mutation p.A533V 0.32 deleterious(0.02) benign(0.165) TCGA-AQ-A04H-01 18 9195691 9195691 A G ANKRD12 Missense_Mutation p.D77G 0.33 deleterious(0) probably_damaging(0.999) TCGA-AQ-A04H-01 19 15784437 15784437 G A CYP4F12 Missense_Mutation p.R33H 0.19 tolerated(0.17) benign(0.009) TCGA-AQ-A04H-01 19 56243838 56243838 G A NLRP9 Silent p.A453A 0.36 TCGA-AQ-A04H-01 19 58199755 58199755 G T ZNF551 3'UTR 0.36 TCGA-AQ-A04H-01 1 115220952 115220952 A G AMPD1 Splice_Site p.X397_splice 0.35 TCGA-AQ-A04H-01 1 166990949 166990949 G A MAEL Missense_Mutation p.V388I 0.28 tolerated(0.25) benign(0.194) TCGA-AQ-A04H-01 1 196621079 196621079 G T CFH 5'UTR 0.31 TCGA-AQ-A04H-01 1 196967316 196967316 G A CFHR5 Silent p.K343K 0.14 TCGA-AQ-A04H-01 1 233394198 233394198 G A PCNXL2 Silent p.Y470Y 0.08 TCGA-AQ-A04H-01 1 237551480 237551480 G A RYR2 Missense_Mutation p.R257Q 0.53 possibly_damaging(0.514) TCGA-AQ-A04H-01 1 242159611 242159611 T A MAP1LC3C Missense_Mutation p.T100S 0.20 tolerated(0.17) probably_damaging(0.951) TCGA-AQ-A04H-01 1 25783154 25783154 C T TMEM57 Missense_Mutation p.P162S 0.60 deleterious(0.04) probably_damaging(0.928) TCGA-AQ-A04H-01 20 42195142 42195142 T C SGK2 Missense_Mutation p.S63P 0.30 deleterious(0.03) benign(0.248) TCGA-AQ-A04H-01 20 47989776 47989776 G A KCNB1 Missense_Mutation p.P774L 0.23 tolerated_low_confidence(0.08) benign(0.104) TCGA-AQ-A04H-01 20 5157348 5157348 G A CDS2 Missense_Mutation p.V116I 0.34 tolerated(0.05) possibly_damaging(0.899) TCGA-AQ-A04H-01 20 55953115 55953115 G A RAE1 Missense_Mutation p.R356H 0.14 tolerated(1) benign(0.017) TCGA-AQ-A04H-01 21 32015215 32015215 A G KRTAP20-3 Missense_Mutation p.Y3C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-AQ-A04H-01 2 128409054 128409054 G A GPR17 Missense_Mutation p.V277M 0.33 tolerated(0.27) possibly_damaging(0.832) TCGA-AQ-A04H-01 2 160084463 160084463 G A TANC1 Missense_Mutation p.R1346Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-AQ-A04H-01 2 166245632 166245632 C A SCN2A Silent p.I1772I 0.49 TCGA-AQ-A04H-01 2 219295614 219295614 C T VIL1 Intron 0.86 TCGA-AQ-A04H-01 2 219611916 219611916 C T TTLL4 Missense_Mutation p.P722L 0.26 deleterious(0) probably_damaging(1) TCGA-AQ-A04H-01 2 234357797 234357797 G A DGKD Missense_Mutation p.D555N 0.24 deleterious(0.03) benign(0.067) TCGA-AQ-A04H-01 3 102171957 102171957 T G ZPLD1 Missense_Mutation p.L117V 0.25 tolerated(0.14) possibly_damaging(0.639) TCGA-AQ-A04H-01 3 12977013 12977013 C A IQSEC1 Silent p.S515S 0.67 TCGA-AQ-A04H-01 3 146171913 146171913 T G PLSCR2 Missense_Mutation p.Y193S 0.82 deleterious(0.04) probably_damaging(0.924) TCGA-AQ-A04H-01 3 172224441 172224441 A G TNFSF10 Silent p.S229S 0.15 TCGA-AQ-A04H-01 3 185969589 185969589 C T DGKG Missense_Mutation p.V574I 0.66 tolerated(0.11) benign(0.02) TCGA-AQ-A04H-01 3 38793791 38793791 G T SCN10A Missense_Mutation p.S558R 0.28 tolerated(0.4) benign(0.078) TCGA-AQ-A04H-01 3 9792081 9792081 G C OGG1 Silent p.L37L 0.20 TCGA-AQ-A04H-01 4 174450102 174450102 C A HAND2 Missense_Mutation p.Q113H 0.29 tolerated(0.05) benign(0.102) TCGA-AQ-A04H-01 4 47938686 47938686 G A CNGA1 Silent p.L678L 0.30 TCGA-AQ-A04H-01 5 130769161 130769161 G A RAPGEF6 Silent p.H1320H 0.57 TCGA-AQ-A04H-01 5 140215374 140215374 C T PCDHA7 Missense_Mutation p.P469L 0.60 deleterious_low_confidence(0.01) benign(0.302) TCGA-AQ-A04H-01 5 140580102 140580102 G T PCDHB11 Missense_Mutation p.R252L 0.24 tolerated_low_confidence(0.29) benign(0.001) TCGA-AQ-A04H-01 5 140745927 140745927 G A PCDHGA5 Missense_Mutation p.S677N 0.33 tolerated_low_confidence(0.14) benign(0.023) TCGA-AQ-A04H-01 6 70840095 70840095 G T COL19A1 Nonsense_Mutation p.G455* 0.25 TCGA-AQ-A04H-01 7 108210097 108210097 C T THAP5 5'UTR 0.48 TCGA-AQ-A04H-01 7 27135343 27135343 C T HOXA1 Silent p.S63S 0.33 TCGA-AQ-A04H-01 8 107696538 107696538 T G OXR1 Missense_Mutation p.V160G 0.21 tolerated(0.27) benign(0.241) TCGA-AQ-A04H-01 8 139697498 139697498 C T COL22A1 Missense_Mutation p.A974T 0.40 unknown(0) TCGA-AQ-A04H-01 8 141549439 141549439 A T AGO2 Missense_Mutation p.C717S 0.27 tolerated(0.13) possibly_damaging(0.718) TCGA-AQ-A04H-01 8 3015484 3015484 C T CSMD1 Missense_Mutation p.R1950H 0.34 benign(0.008) TCGA-AQ-A04H-01 8 42026650 42026650 T - AP3M2 3'UTR 0.23 TCGA-AQ-A04H-01 8 52359611 52359611 G A PXDNL Missense_Mutation p.S493L 0.37 tolerated(0.3) benign(0.009) TCGA-AQ-A04H-01 8 55060178 55060178 C G MRPL15 Missense_Mutation p.Q264E 0.20 deleterious(0.03) possibly_damaging(0.885) TCGA-AQ-A04H-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.60 TCGA-AQ-A04H-01 9 130469276 130469276 C G C9orf117 5'UTR 0.54 TCGA-AQ-A04H-01 9 135374976 135374976 G A C9orf171 Silent p.G207G 0.39 TCGA-AQ-A04H-01 9 35792632 35792632 C G NPR2 Missense_Mutation p.S76C 0.29 deleterious(0) probably_damaging(0.987) TCGA-AQ-A04H-01 9 88842240 88842240 T C C9orf153 3'UTR 0.19 TCGA-AQ-A04H-01 9 95378177 95378177 G A IPPK Silent p.N471N 0.18 TCGA-AQ-A04H-01 X 141290906 141290906 G C MAGEC2 Missense_Mutation p.P290A 0.42 deleterious(0.04) probably_damaging(0.957) TCGA-AQ-A04H-01 X 19017274 19017274 C A GPR64 Missense_Mutation p.K818N 0.37 deleterious(0.04) possibly_damaging(0.765) TCGA-AQ-A04H-01 X 591785 591785 G A SHOX Silent p.T51T 0.32 TCGA-AQ-A0Y5-01 10 103899095 103899095 A C PPRC1 Missense_Mutation p.H277P 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-AQ-A0Y5-01 11 117306505 117306505 T C DSCAML1 Silent p.P1637P 0.41 TCGA-AQ-A0Y5-01 11 134147327 134147327 C T GLB1L3 Missense_Mutation p.A44V 0.15 tolerated(0.38) benign(0.001) TCGA-AQ-A0Y5-01 11 489687 489687 G A PTDSS2 Missense_Mutation p.V357M 0.36 tolerated(0.11) possibly_damaging(0.487) TCGA-AQ-A0Y5-01 11 5529582 5529582 T G UBQLN3 Missense_Mutation p.I403L 0.11 deleterious(0.05) benign(0.006) TCGA-AQ-A0Y5-01 11 55406765 55406765 T A OR4P4 Missense_Mutation p.L311H 0.12 deleterious_low_confidence(0) benign(0.436) TCGA-AQ-A0Y5-01 11 56756390 56756390 T C OR5AK2 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.938) TCGA-AQ-A0Y5-01 11 62298456 62298456 C G AHNAK Missense_Mutation p.E1145Q 0.07 possibly_damaging(0.898) TCGA-AQ-A0Y5-01 11 62751063 62751063 G A SLC22A6 Missense_Mutation p.R192W 0.41 deleterious(0.01) probably_damaging(1) TCGA-AQ-A0Y5-01 11 7439227 7439227 G A SYT9 Missense_Mutation p.R402Q 0.11 deleterious(0) probably_damaging(0.929) TCGA-AQ-A0Y5-01 12 14834333 14834333 C A GUCY2C Missense_Mutation p.K230N 0.11 tolerated(0.16) benign(0.063) TCGA-AQ-A0Y5-01 12 15777330 15777330 G A EPS8 Nonsense_Mutation p.Q686* 0.21 TCGA-AQ-A0Y5-01 12 2602510 2602510 C T CACNA1C Silent p.F357F 0.31 TCGA-AQ-A0Y5-01 12 58020689 58020689 C T B4GALNT1 Silent p.V480V 0.09 TCGA-AQ-A0Y5-01 13 53049138 53049138 G T CKAP2 Missense_Mutation p.L638F 0.58 deleterious(0) probably_damaging(0.991) TCGA-AQ-A0Y5-01 14 23863422 23863422 G A MYH6 Missense_Mutation p.T847M 0.42 tolerated(0.11) possibly_damaging(0.556) TCGA-AQ-A0Y5-01 15 22939262 22939262 T - CYFIP1 Frame_Shift_Del p.S330Lfs*20 0.16 TCGA-AQ-A0Y5-01 15 33091054 33091054 C T FMN1 Missense_Mutation p.D1138N 0.04 deleterious(0) probably_damaging(0.999) TCGA-AQ-A0Y5-01 15 33858967 33858967 G A RYR3 Missense_Mutation p.R412Q 0.11 possibly_damaging(0.899) TCGA-AQ-A0Y5-01 15 42701522 42701522 C T CAPN3 Nonsense_Mutation p.Q646* 0.03 TCGA-AQ-A0Y5-01 15 65884055 65884055 C T VWA9 Missense_Mutation p.G277E 0.14 deleterious(0) probably_damaging(0.963) TCGA-AQ-A0Y5-01 15 66161954 66161954 C T RAB11A Missense_Mutation p.L11F 0.26 deleterious_low_confidence(0.01) benign(0.02) TCGA-AQ-A0Y5-01 16 22122217 22122217 C T VWA3A Silent p.I197I 0.15 TCGA-AQ-A0Y5-01 16 4558020 4558020 G A HMOX2 Missense_Mutation p.A171T 0.34 tolerated(0.09) possibly_damaging(0.45) TCGA-AQ-A0Y5-01 16 7726799 7726799 C T RBFOX1 Silent p.Y339Y 0.22 TCGA-AQ-A0Y5-01 16 83378554 83378554 C T CDH13 Nonsense_Mutation p.R289* 0.15 TCGA-AQ-A0Y5-01 17 3725313 3725313 C G C17orf85 Missense_Mutation p.S277T 0.13 deleterious(0) benign(0.097) TCGA-AQ-A0Y5-01 17 38552611 38552611 C T TOP2A Missense_Mutation p.R1215H 0.07 tolerated(0.55) benign(0) TCGA-AQ-A0Y5-01 19 10271089 10271091 CTC - DNMT1 In_Frame_Del p.E338del 0.16 TCGA-AQ-A0Y5-01 19 18650369 18650369 C T FKBP8 Missense_Mutation p.V152I 0.32 deleterious(0.05) possibly_damaging(0.685) TCGA-AQ-A0Y5-01 19 33493752 33493752 G A RHPN2 Silent p.F305F 0.15 TCGA-AQ-A0Y5-01 19 50302943 50302943 G A AP2A1 Missense_Mutation p.D398N 0.23 deleterious(0) possibly_damaging(0.494) TCGA-AQ-A0Y5-01 19 56204118 56204118 C G EPN1 Missense_Mutation p.P464R 0.22 deleterious(0) benign(0.367) TCGA-AQ-A0Y5-01 1 100350009 100350009 T C AGL Splice_Site p.X849_splice 0.38 TCGA-AQ-A0Y5-01 1 185260026 185260026 G C SWT1 3'UTR 0.27 TCGA-AQ-A0Y5-01 1 200377724 200377724 G C ZNF281 Silent p.V370V 0.14 TCGA-AQ-A0Y5-01 1 201038705 201038705 G T CACNA1S Silent p.I795I 0.27 TCGA-AQ-A0Y5-01 1 235622062 235622082 GAGAATGAAGGTTGTGTAAGA - B3GALNT2 In_Frame_Del p.L285_S291del 0.26 TCGA-AQ-A0Y5-01 1 246805311 246805311 G C CNST Missense_Mutation p.K303N 0.23 deleterious(0.03) benign(0.009) TCGA-AQ-A0Y5-01 1 248262902 248262902 C A OR2L13 Silent p.T75T 0.35 TCGA-AQ-A0Y5-01 1 35453165 35453165 G C ZMYM6 Nonsense_Mutation p.S1173* 0.16 TCGA-AQ-A0Y5-01 1 40961166 40961166 G A ZFP69 Missense_Mutation p.R339H 0.41 tolerated(0.09) probably_damaging(0.995) TCGA-AQ-A0Y5-01 1 52891167 52891167 C T ZCCHC11 Missense_Mutation p.R1575Q 0.59 tolerated_low_confidence(0.81) possibly_damaging(0.47) TCGA-AQ-A0Y5-01 1 53729901 53729901 C T LRP8 Missense_Mutation p.R532H 0.43 deleterious(0.01) benign(0.005) TCGA-AQ-A0Y5-01 1 89729432 89729432 C T GBP5 Missense_Mutation p.R450Q 0.12 deleterious(0.03) benign(0.442) TCGA-AQ-A0Y5-01 20 30388907 30388907 C A TPX2 3'UTR 0.24 TCGA-AQ-A0Y5-01 20 32661659 32661659 G A RALY Missense_Mutation p.D122N 0.31 tolerated(0.08) benign(0.01) TCGA-AQ-A0Y5-01 2 138373750 138373750 C T THSD7B Silent p.C1146C 0.29 TCGA-AQ-A0Y5-01 2 3691607 3691607 G A COLEC11 Missense_Mutation p.E253K 0.11 tolerated(0.33) possibly_damaging(0.562) TCGA-AQ-A0Y5-01 3 143371135 143371135 C G SLC9A9 Missense_Mutation p.E239D 0.12 deleterious(0) probably_damaging(0.999) TCGA-AQ-A0Y5-01 3 167068244 167068244 T C ZBBX Silent p.K164K 0.18 TCGA-AQ-A0Y5-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.21 tolerated(0.06) possibly_damaging(0.801) TCGA-AQ-A0Y5-01 3 52302332 52302332 G C WDR82 Intron 0.40 TCGA-AQ-A0Y5-01 3 52365312 52365312 G T DNAH1 Silent p.G340G 0.41 TCGA-AQ-A0Y5-01 3 53810978 53810978 T A CACNA1D Missense_Mutation p.C1548S 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-AQ-A0Y5-01 3 98217306 98217306 G A OR5K2 Missense_Mutation p.R261K 0.15 deleterious(0.02) benign(0.151) TCGA-AQ-A0Y5-01 4 91549368 91549368 G C CCSER1 Missense_Mutation p.K639N 0.24 deleterious(0) probably_damaging(0.975) TCGA-AQ-A0Y5-01 5 140730085 140730085 G A PCDHGB1 Silent p.R86R 0.31 TCGA-AQ-A0Y5-01 5 38451545 38451545 G C EGFLAM Missense_Mutation p.G899A 0.13 deleterious(0) probably_damaging(1) TCGA-AQ-A0Y5-01 6 129823915 129823915 C T LAMA2 Missense_Mutation p.R2786C 0.12 deleterious(0) benign(0.402) TCGA-AQ-A0Y5-01 6 160543262 160543262 G A SLC22A1 Missense_Mutation p.A99T 0.33 tolerated(0.7) benign(0.013) TCGA-AQ-A0Y5-01 6 350668 350668 T C DUSP22 Intron 0.23 TCGA-AQ-A0Y5-01 6 54214608 54214608 C T TINAG Missense_Mutation p.R332W 0.26 deleterious(0) probably_damaging(0.999) TCGA-AQ-A0Y5-01 7 100648354 100648354 C T MUC12 Missense_Mutation p.S4837L 0.43 unknown(0) TCGA-AQ-A0Y5-01 7 11630106 11630106 A T THSD7A Missense_Mutation p.S478R 0.24 tolerated(0.32) benign(0.017) TCGA-AQ-A0Y5-01 7 148457520 148457520 G C CUL1 Missense_Mutation p.E241Q 0.22 deleterious(0.02) possibly_damaging(0.865) TCGA-AQ-A0Y5-01 7 47408046 47408046 G C TNS3 Missense_Mutation p.P733A 0.29 tolerated(0.66) benign(0.005) TCGA-AQ-A0Y5-01 8 102701530 102701530 G A NCALD 3'UTR 0.06 TCGA-AQ-A0Y5-01 8 133764157 133764157 C T TMEM71 Missense_Mutation p.R63Q 0.21 deleterious(0.02) probably_damaging(0.923) TCGA-AQ-A0Y5-01 8 144940689 144940689 T G EPPK1 Missense_Mutation p.I2245L 0.10 benign(0.442) TCGA-AQ-A0Y5-01 8 23217687 23217687 C G LOXL2 Missense_Mutation p.K149N 0.40 tolerated(0.12) probably_damaging(0.943) TCGA-AQ-A0Y5-01 X 30709241 30709241 G T GK Silent p.V113V 0.16 TCGA-AQ-A0Y5-01 X 84526742 84526742 C A ZNF711 Missense_Mutation p.P732T 0.15 deleterious(0) probably_damaging(1) TCGA-AQ-A1H2-01 10 115607027 115607027 T C DCLRE1A Silent p.T731T 0.39 TCGA-AQ-A1H2-01 10 135076604 135076604 C T ADAM8 3'UTR 0.43 TCGA-AQ-A1H2-01 12 120634708 120634708 G A RPLP0 Silent p.A274A 0.27 TCGA-AQ-A1H2-01 14 22192048 22192048 C A TRAV3 5'UTR 0.29 TCGA-AQ-A1H2-01 15 34654803 34654803 A T LPCAT4 Nonsense_Mutation p.Y285* 0.53 TCGA-AQ-A1H2-01 17 2291304 2291304 C G MNT Missense_Mutation p.E283Q 0.50 deleterious(0.02) possibly_damaging(0.566) TCGA-AQ-A1H2-01 17 39994105 39994105 C T KLHL10 5'UTR 0.56 TCGA-AQ-A1H2-01 17 7400102 7400102 G A POLR2A Missense_Mutation p.R186Q 0.45 probably_damaging(0.929) TCGA-AQ-A1H2-01 17 7833976 7833976 C T TRAPPC1 Missense_Mutation p.R129Q 0.50 tolerated(0.26) benign(0.008) TCGA-AQ-A1H2-01 1 16261272 16261273 - CT SPEN Frame_Shift_Ins p.E2846Dfs*44 0.53 TCGA-AQ-A1H2-01 1 238090087 238090087 G A RP11-193H5.1 RNA 0.61 TCGA-AQ-A1H2-01 1 36204752 36204752 G A CLSPN Nonsense_Mutation p.R1139* 0.36 TCGA-AQ-A1H2-01 1 40778134 40778134 T A COL9A2 Silent p.G119G 0.43 TCGA-AQ-A1H2-01 21 30909667 30909667 A G GRIK1 Missense_Mutation p.S912P 0.38 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-AQ-A1H2-01 21 43826453 43826453 G A UBASH3A Silent p.A50A 0.42 TCGA-AQ-A1H2-01 2 239154912 239154912 A G PER2 3'UTR 0.40 TCGA-AQ-A1H2-01 2 26533779 26533779 C T GPR113 Silent p.V939V 0.57 TCGA-AQ-A1H2-01 3 108129757 108129757 G A MYH15 Nonsense_Mutation p.Q1410* 0.58 TCGA-AQ-A1H2-01 3 122578962 122578964 CTC - DIRC2 In_Frame_Del p.L353del 0.45 TCGA-AQ-A1H2-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.30 tolerated(0.11) possibly_damaging(0.529) TCGA-AQ-A1H2-01 3 47308543 47308543 A C KIF9 Missense_Mutation p.L231V 0.39 tolerated(0.15) benign(0.411) TCGA-AQ-A1H2-01 3 78987810 78987810 C T ROBO1 Missense_Mutation p.C147Y 0.42 deleterious(0) probably_damaging(0.993) TCGA-AQ-A1H2-01 4 187542456 187542456 C T FAT1 Missense_Mutation p.A1762T 0.38 benign(0.002) TCGA-AQ-A1H2-01 4 41749389 41749389 C T PHOX2B Missense_Mutation p.D136N 0.57 tolerated(0.14) probably_damaging(0.979) TCGA-AQ-A1H2-01 4 69199062 69199062 C A YTHDC1 Missense_Mutation p.D313Y 0.26 deleterious(0) possibly_damaging(0.753) TCGA-AQ-A1H2-01 4 74026906 74026906 T C ANKRD17 Intron 0.43 TCGA-AQ-A1H2-01 5 140718824 140718824 T A PCDHGA2 Missense_Mutation p.C96S 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AQ-A1H2-01 5 175307021 175307021 G A CPLX2 Silent p.G126G 0.42 TCGA-AQ-A1H2-01 6 160962167 160962167 C G LPA Missense_Mutation p.V1856L 0.40 deleterious(0.01) benign(0.012) TCGA-AQ-A1H2-01 6 37619916 37619916 C G MDGA1 Missense_Mutation p.A395P 0.43 tolerated(1) benign(0.009) TCGA-AQ-A1H2-01 7 152009002 152009002 G - KMT2C Frame_Shift_Del p.S207Ffs*3 0.45 TCGA-AQ-A1H2-01 8 120598499 120598499 G A ENPP2 Missense_Mutation p.R484C 0.29 deleterious(0) probably_damaging(1) TCGA-AQ-A1H2-01 X 109764869 109764869 G A TDGF1P3 RNA 0.45 TCGA-AQ-A1H2-01 X 144904015 144904015 T A SLITRK2 Silent p.T24T 0.39 TCGA-AQ-A1H2-01 X 155004063 155004063 C T SPRY3 Missense_Mutation p.S177F 0.44 deleterious(0) probably_damaging(0.999) TCGA-AQ-A1H2-01 X 21874875 21874875 C T YY2 Silent p.C91C 0.38 TCGA-AQ-A1H2-01 X 48755643 48755643 G T PQBP1 5'UTR 0.39 TCGA-AQ-A1H3-01 11 33038071 33038072 CT - DEPDC7 Intron 0.34 TCGA-AQ-A1H3-01 11 61295504 61295504 C T SYT7 Missense_Mutation p.G244S 0.07 deleterious(0) probably_damaging(0.999) TCGA-AQ-A1H3-01 12 115115438 115115439 - T TBX3 Frame_Shift_Ins p.N296Kfs*31 0.18 TCGA-AQ-A1H3-01 12 12871006 12871007 - GG CDKN1B Frame_Shift_Ins p.V79Gfs*41 0.26 TCGA-AQ-A1H3-01 12 6702279 6702279 C T CHD4 Missense_Mutation p.R877Q 0.39 deleterious(0) possibly_damaging(0.857) TCGA-AQ-A1H3-01 13 37678703 37678704 - T CSNK1A1L Frame_Shift_Ins p.Q231Tfs*4 0.21 TCGA-AQ-A1H3-01 14 60976319 60976319 G A SIX6 Missense_Mutation p.R68H 0.40 tolerated(0.14) benign(0.063) TCGA-AQ-A1H3-01 14 73976100 73976100 G A HEATR4 Missense_Mutation p.R546W 0.32 deleterious(0) probably_damaging(0.911) TCGA-AQ-A1H3-01 15 34015010 34015010 C T RYR3 Silent p.N2238N 0.20 TCGA-AQ-A1H3-01 15 45388167 45388167 G A DUOX2 Silent p.T1313T 0.46 TCGA-AQ-A1H3-01 16 67070640 67070643 AGAA - CBFB Frame_Shift_Del p.R90Kfs*7 0.53 TCGA-AQ-A1H3-01 19 51729330 51729330 C T CD33 Silent p.N230N 0.41 TCGA-AQ-A1H3-01 1 11982841 11982841 T C KIAA2013 Missense_Mutation p.D580G 0.16 deleterious(0.01) benign(0.266) TCGA-AQ-A1H3-01 1 152800123 152800123 G A LCE1A Missense_Mutation p.G59S 0.16 tolerated_low_confidence(0.61) unknown(0) TCGA-AQ-A1H3-01 1 156823744 156823744 T A INSRR Missense_Mutation p.E146V 0.75 tolerated(0.06) probably_damaging(0.999) TCGA-AQ-A1H3-01 1 16946323 16946323 C T RP5-1182A14.5 3'Flank 0.17 TCGA-AQ-A1H3-01 1 61848997 61848997 G A NFIA Silent p.A390A 0.27 TCGA-AQ-A1H3-01 2 141081609 141081609 T C LRP1B Missense_Mutation p.I4123V 0.30 benign(0) TCGA-AQ-A1H3-01 2 27598768 27598768 G A SNX17 Missense_Mutation p.R345H 0.33 tolerated(0.1) benign(0.018) TCGA-AQ-A1H3-01 3 128200691 128200691 C T GATA2 Missense_Mutation p.A372T 0.20 deleterious(0) probably_damaging(0.995) TCGA-AQ-A1H3-01 3 12881755 12881755 A C RPL32 Intron 0.33 TCGA-AQ-A1H3-01 3 168802736 168802736 C T MECOM Silent p.A1104A 0.33 TCGA-AQ-A1H3-01 3 48630811 48630811 C T COL7A1 Silent p.Q166Q 0.29 TCGA-AQ-A1H3-01 5 140180885 140180885 G A PCDHA3 Missense_Mutation p.V35I 0.34 tolerated_low_confidence(0.18) benign(0.39) TCGA-AQ-A1H3-01 5 140725928 140725928 G A PCDHGA3 Silent p.A776A 0.25 TCGA-AQ-A1H3-01 7 4900824 4900824 C T PAPOLB Silent p.R205R 0.41 TCGA-AQ-A1H3-01 8 28595120 28595120 C G EXTL3 Nonsense_Mutation p.Y787* 0.36 TCGA-AQ-A1H3-01 8 38314914 38314914 T C FGFR1 Silent p.T50T 0.22 TCGA-AQ-A1H3-01 8 53596281 53596281 T G RB1CC1 Splice_Site p.X67_splice 0.28 TCGA-AQ-A1H3-01 X 100645973 100645973 A T RPL36A Missense_Mutation p.Y17F 0.31 tolerated_low_confidence(0.43) benign(0.098) TCGA-AQ-A1H3-01 X 135827435 135827435 G C ARHGEF6 Missense_Mutation p.Q136E 0.30 tolerated_low_confidence(0.07) benign(0.027) TCGA-AQ-A1H3-01 X 67938428 67938428 C T STARD8 Missense_Mutation p.R558W 0.33 deleterious(0.01) possibly_damaging(0.843) TCGA-AQ-A54O-01 10 72511877 72511877 C T ADAMTS14 Missense_Mutation p.R878W 0.14 deleterious(0) probably_damaging(0.997) TCGA-AQ-A54O-01 11 95712715 95712715 C T MAML2 Missense_Mutation p.M956I 0.11 unknown(0) TCGA-AQ-A54O-01 12 58088018 58088018 C G OS9 Missense_Mutation p.T25S 0.38 tolerated(0.82) benign(0.01) TCGA-AQ-A54O-01 14 35269544 35269544 C A BAZ1A Missense_Mutation p.K338N 0.35 deleterious(0.03) benign(0.403) TCGA-AQ-A54O-01 14 86088823 86088823 C T FLRT2 Missense_Mutation p.T322I 0.14 tolerated(0.4) benign(0.01) TCGA-AQ-A54O-01 14 89154694 89154694 C T EML5 Missense_Mutation p.C888Y 0.32 tolerated(1) benign(0.001) TCGA-AQ-A54O-01 15 31947336 31947336 C T OTUD7A Silent p.T38T 0.22 TCGA-AQ-A54O-01 15 69079873 69079873 A C ANP32A Missense_Mutation p.L69R 0.27 deleterious(0) probably_damaging(1) TCGA-AQ-A54O-01 15 99505871 99505871 A G IGF1R 3'UTR 0.38 TCGA-AQ-A54O-01 17 17786097 17786097 C T TOM1L2 Silent p.S194S 0.47 TCGA-AQ-A54O-01 17 28598355 28598355 C A BLMH Silent p.A360A 0.18 TCGA-AQ-A54O-01 18 33257560 33257560 A G GALNT1 Missense_Mutation p.K107R 0.20 tolerated(0.65) benign(0.003) TCGA-AQ-A54O-01 19 46506715 46506715 C T CCDC61 Nonsense_Mutation p.Q63* 0.27 TCGA-AQ-A54O-01 19 474621 474621 C T ODF3L2 Missense_Mutation p.G43S 0.16 deleterious(0.02) benign(0.298) TCGA-AQ-A54O-01 1 149398888 149398888 C A HIST2H3PS2 3'Flank 0.12 TCGA-AQ-A54O-01 1 161681736 161681736 C T FCRLA Missense_Mutation p.A194V 0.26 tolerated(0.15) benign(0.229) TCGA-AQ-A54O-01 1 183596216 183596216 G A ARPC5 3'UTR 0.21 TCGA-AQ-A54O-01 2 10192480 10192480 G A KLF11 Missense_Mutation p.R462H 0.21 deleterious(0) probably_damaging(0.999) TCGA-AQ-A54O-01 2 212587168 212587168 T C ERBB4 Missense_Mutation p.N278S 0.32 deleterious(0.02) possibly_damaging(0.782) TCGA-AQ-A54O-01 2 80530774 80530774 G A LRRTM1 Silent p.L57L 0.43 TCGA-AQ-A54O-01 3 141167084 141167084 C T ZBTB38 3'UTR 0.15 TCGA-AQ-A54O-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-AQ-A54O-01 3 25833071 25833071 T - OXSM Frame_Shift_Del p.M187Rfs*37 0.26 TCGA-AQ-A54O-01 3 81630320 81630320 T A GBE1 Missense_Mutation p.D481V 0.22 deleterious(0) probably_damaging(1) TCGA-AQ-A54O-01 4 151199019 151199019 C A LRBA Silent p.L2829L 0.10 TCGA-AQ-A54O-01 7 82581718 82581718 C T PCLO Missense_Mutation p.A2851T 0.25 unknown(0) TCGA-AQ-A7U7-01 10 17146602 17146602 G A CUBN Silent p.D411D 0.11 TCGA-AQ-A7U7-01 10 28822524 28822524 A G WAC Missense_Mutation p.R6G 0.12 deleterious(0.04) benign(0) TCGA-AQ-A7U7-01 10 72285780 72285780 G A PALD1 Missense_Mutation p.G25S 0.14 tolerated(0.21) benign(0.04) TCGA-AQ-A7U7-01 11 110007626 110007626 C G ZC3H12C Missense_Mutation p.S87C 0.17 deleterious(0.01) possibly_damaging(0.614) TCGA-AQ-A7U7-01 11 30032701 30032701 G A KCNA4 Nonsense_Mutation p.Q509* 0.10 TCGA-AQ-A7U7-01 11 6232897 6232897 G A FAM160A2 Nonsense_Mutation p.R934* 0.07 TCGA-AQ-A7U7-01 11 7021361 7021361 C T ZNF214 Missense_Mutation p.R518K 0.09 tolerated(0.24) probably_damaging(0.978) TCGA-AQ-A7U7-01 11 93754693 93754693 C T HEPHL1 Silent p.F53F 0.09 TCGA-AQ-A7U7-01 12 115118864 115118864 A TC TBX3 Frame_Shift_Ins p.D159Efs*6 0.12 TCGA-AQ-A7U7-01 12 33031429 33031429 G - PKP2 Frame_Shift_Del p.Q129Sfs*13 0.22 TCGA-AQ-A7U7-01 14 100563834 100563834 C G EVL Nonsense_Mutation p.S66* 0.16 TCGA-AQ-A7U7-01 14 39583500 39583500 G C GEMIN2 5'UTR 0.09 TCGA-AQ-A7U7-01 14 39584037 39584037 G C GEMIN2 Missense_Mutation p.E59Q 0.06 deleterious(0) probably_damaging(1) TCGA-AQ-A7U7-01 14 55658385 55658385 G C DLGAP5 5'UTR 0.18 TCGA-AQ-A7U7-01 14 59014874 59014874 G T KIAA0586 3'Flank 0.33 TCGA-AQ-A7U7-01 14 75248097 75248097 C G YLPM1 Missense_Mutation p.L451V 0.06 unknown(0) TCGA-AQ-A7U7-01 15 24928492 24928492 G A NPAP1 3'UTR 0.27 TCGA-AQ-A7U7-01 15 26828528 26828528 G C GABRB3 Silent p.L165L 0.20 TCGA-AQ-A7U7-01 15 35275314 35275314 G C ZNF770 Missense_Mutation p.Q108E 0.07 tolerated(0.24) benign(0.254) TCGA-AQ-A7U7-01 15 43823472 43823472 G A MAP1A 3'UTR 0.11 TCGA-AQ-A7U7-01 15 52074977 52074977 G A TMOD2 Silent p.V228V 0.12 TCGA-AQ-A7U7-01 15 56121924 56121924 G C NEDD4 3'UTR 0.11 TCGA-AQ-A7U7-01 15 56388507 56388507 C T RFX7 Silent p.V473V 0.11 TCGA-AQ-A7U7-01 16 15709703 15709703 G A KIAA0430 Silent p.P1079P 0.09 TCGA-AQ-A7U7-01 16 56519633 56519633 C T BBS2 Missense_Mutation p.R643H 0.19 tolerated(0.54) benign(0.021) TCGA-AQ-A7U7-01 16 56947269 56947269 C T SLC12A3 Silent p.I1015I 0.12 TCGA-AQ-A7U7-01 17 11540047 11540047 C T DNAH9 Silent p.L578L 0.08 TCGA-AQ-A7U7-01 17 70117784 70117785 - G SOX9 Frame_Shift_Ins p.D85Gfs*167 0.13 TCGA-AQ-A7U7-01 17 73127315 73127315 C T NT5C Missense_Mutation p.G79E 0.09 deleterious(0) probably_damaging(1) TCGA-AQ-A7U7-01 19 12904041 12904041 G C JUNB 3'UTR 0.07 TCGA-AQ-A7U7-01 19 22155473 22155473 C G ZNF208 Missense_Mutation p.R788P 0.12 tolerated(0.13) benign(0.003) TCGA-AQ-A7U7-01 19 36642577 36642577 G C COX7A1 Silent p.L32L 0.12 TCGA-AQ-A7U7-01 19 38160237 38160237 G C ZNF781 Silent p.L271L 0.23 TCGA-AQ-A7U7-01 19 41245407 41245407 G A ITPKC Missense_Mutation p.G665D 0.12 deleterious(0) probably_damaging(1) TCGA-AQ-A7U7-01 19 45254563 45254563 C T BCL3 Silent p.P112P 0.12 TCGA-AQ-A7U7-01 19 46287947 46287947 C G AC011530.4 Missense_Mutation p.Q49H 0.15 tolerated_low_confidence(0.19) probably_damaging(0.936) TCGA-AQ-A7U7-01 19 50413062 50413062 C T NUP62 Translation_Start_Site p.M1? 0.08 tolerated(0.11) unknown(0) TCGA-AQ-A7U7-01 19 50463893 50463893 C T SIGLEC11 Missense_Mutation p.E126K 0.13 tolerated(0.29) benign(0.063) TCGA-AQ-A7U7-01 19 50548796 50548796 C G ZNF473 Missense_Mutation p.Q366E 0.12 tolerated(0.05) benign(0.135) TCGA-AQ-A7U7-01 1 115284280 115284280 C T CSDE1 Silent p.E2E 0.16 TCGA-AQ-A7U7-01 1 150960781 150960781 G A ANXA9 Silent p.P272P 0.11 TCGA-AQ-A7U7-01 1 151492931 151492931 T C CGN Missense_Mutation p.L339S 0.07 deleterious(0) probably_damaging(0.989) TCGA-AQ-A7U7-01 1 155210490 155210490 T C GBA Missense_Mutation p.S16G 0.09 tolerated_low_confidence(1) benign(0) TCGA-AQ-A7U7-01 1 16260421 16260421 C T SPEN Silent p.V2562V 0.09 TCGA-AQ-A7U7-01 1 201434735 201434735 G A PHLDA3 3'UTR 0.08 TCGA-AQ-A7U7-01 1 234553935 234553935 G A TARBP1 Silent p.F1200F 0.04 TCGA-AQ-A7U7-01 1 3329107 3329107 G A PRDM16 Silent p.V782V 0.05 TCGA-AQ-A7U7-01 1 34076672 34076672 C G CSMD2 Missense_Mutation p.Q2064H 0.10 tolerated(0.06) probably_damaging(0.997) TCGA-AQ-A7U7-01 1 47023900 47023900 G A MKNK1 3'UTR 0.18 TCGA-AQ-A7U7-01 20 3299029 3299029 C T C20orf194 Missense_Mutation p.D459N 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-AQ-A7U7-01 20 61944535 61944535 G A COL20A1 Missense_Mutation p.V715I 0.31 tolerated(1) benign(0.001) TCGA-AQ-A7U7-01 20 62326934 62326934 C T RTEL1 Intron 0.08 TCGA-AQ-A7U7-01 20 9546778 9546778 C T PAK7 Missense_Mutation p.S415N 0.18 deleterious(0.04) benign(0.101) TCGA-AQ-A7U7-01 22 36694979 36694979 A G MYH9 Missense_Mutation p.I1029T 0.13 probably_damaging(0.999) TCGA-AQ-A7U7-01 22 38062780 38062780 C T PDXP 3'UTR 0.11 TCGA-AQ-A7U7-01 22 38888081 38888081 T C DDX17 Missense_Mutation p.D476G 0.18 deleterious(0) probably_damaging(1) TCGA-AQ-A7U7-01 22 40061947 40061947 C T CACNA1I Missense_Mutation p.S1347L 0.20 deleterious(0) possibly_damaging(0.651) TCGA-AQ-A7U7-01 22 50893259 50893259 G A SBF1 Missense_Mutation p.A1599V 0.08 deleterious(0.04) benign(0.036) TCGA-AQ-A7U7-01 2 113950839 113950839 T G PSD4 Missense_Mutation p.F642V 0.07 deleterious(0.01) possibly_damaging(0.866) TCGA-AQ-A7U7-01 2 160605372 160605372 C G MARCH7 Missense_Mutation p.A524G 0.14 tolerated(0.39) benign(0.153) TCGA-AQ-A7U7-01 2 219204848 219204848 A T PNKD Missense_Mutation p.D150V 0.09 tolerated(0.09) probably_damaging(0.997) TCGA-AQ-A7U7-01 2 234112966 234112966 C T INPP5D Missense_Mutation p.S1045L 0.18 deleterious_low_confidence(0.05) benign(0.009) TCGA-AQ-A7U7-01 2 242035062 242035062 C T MTERFD2 3'UTR 0.14 TCGA-AQ-A7U7-01 3 113378721 113378721 C T KIAA2018 Missense_Mutation p.R603Q 0.08 probably_damaging(0.994) TCGA-AQ-A7U7-01 3 178937410 178937410 G A PIK3CA Missense_Mutation p.E600K 0.25 deleterious(0) possibly_damaging(0.869) TCGA-AQ-A7U7-01 3 37033923 37033923 G A EPM2AIP1 Missense_Mutation p.H216Y 0.08 tolerated(0.1) benign(0.053) TCGA-AQ-A7U7-01 3 48601586 48601586 G A COL7A1 3'UTR 0.05 TCGA-AQ-A7U7-01 3 51431179 51431179 C G RBM15B Missense_Mutation p.I783M 0.12 deleterious(0.03) possibly_damaging(0.854) TCGA-AQ-A7U7-01 4 165962516 165962516 T C TRIM60 Missense_Mutation p.M431T 0.08 deleterious(0.02) possibly_damaging(0.601) TCGA-AQ-A7U7-01 4 366896 366896 G C ZNF141 Missense_Mutation p.E224Q 0.06 deleterious(0.03) probably_damaging(0.966) TCGA-AQ-A7U7-01 4 493078 493078 G A PIGG 5'UTR 0.14 TCGA-AQ-A7U7-01 4 57843448 57843448 C A NOA1 Nonsense_Mutation p.E102* 0.14 TCGA-AQ-A7U7-01 4 83838869 83838869 C T THAP9 Nonsense_Mutation p.Q502* 0.08 TCGA-AQ-A7U7-01 4 83839174 83839174 G A THAP9 Silent p.L603L 0.15 TCGA-AQ-A7U7-01 4 86396465 86396465 T G ARHGAP24 5'UTR 0.45 TCGA-AQ-A7U7-01 5 125821419 125821419 C G GRAMD3 Missense_Mutation p.Q353E 0.10 tolerated(0.38) benign(0.003) TCGA-AQ-A7U7-01 5 134678985 134678985 C T H2AFY Silent p.L306L 0.24 TCGA-AQ-A7U7-01 5 140552626 140552626 G C PCDHB7 Missense_Mutation p.Q70H 0.07 deleterious_low_confidence(0.03) benign(0.002) TCGA-AQ-A7U7-01 5 146997476 146997476 G A JAKMIP2 Nonsense_Mutation p.Q782* 0.13 TCGA-AQ-A7U7-01 5 150932855 150932855 G C FAT2 Missense_Mutation p.L1347V 0.07 benign(0.297) TCGA-AQ-A7U7-01 5 174868257 174868257 C G DRD1 3'UTR 0.05 TCGA-AQ-A7U7-01 5 33936686 33936686 G A RXFP3 5'UTR 0.12 TCGA-AQ-A7U7-01 5 86564652 86564652 C G RASA1 Silent p.L128L 0.15 TCGA-AQ-A7U7-01 6 13365259 13365259 C T GFOD1 Missense_Mutation p.D297N 0.17 tolerated(0.13) benign(0.017) TCGA-AQ-A7U7-01 6 13979296 13979296 G A RNF182 3'UTR 0.13 TCGA-AQ-A7U7-01 6 27835194 27835194 C G HIST1H1B Silent p.A38A 0.06 TCGA-AQ-A7U7-01 6 43147653 43147653 G A SRF 3'UTR 0.16 TCGA-AQ-A7U7-01 6 64408400 64408400 G A PHF3 Missense_Mutation p.E963K 0.09 deleterious(0) probably_damaging(1) TCGA-AQ-A7U7-01 6 94066451 94066451 G T EPHA7 Silent p.I436I 0.29 TCGA-AQ-A7U7-01 7 107664397 107664397 C T LAMB4 3'UTR 0.17 TCGA-AQ-A7U7-01 7 48567879 48567879 C A ABCA13 Missense_Mutation p.F4764L 0.09 benign(0.253) TCGA-AQ-A7U7-01 8 17739553 17739553 C G FGL1 Missense_Mutation p.D67H 0.11 tolerated(0.15) benign(0.352) TCGA-AQ-A7U7-01 9 113431199 113431199 C T MUSK Silent p.V5V 0.26 TCGA-AQ-A7U7-01 X 100382503 100382503 C T CENPI Missense_Mutation p.S308L 0.10 tolerated(0.4) benign(0.063) TCGA-AQ-A7U7-01 X 122551523 122551523 C T GRIA3 Missense_Mutation p.R591C 0.06 deleterious(0.02) possibly_damaging(0.717) TCGA-AQ-A7U7-01 X 14748354 14748354 G A GLRA2 Missense_Mutation p.R369H 0.10 deleterious(0.04) benign(0.12) TCGA-AQ-A7U7-01 X 14749529 14749529 C T GLRA2 3'UTR 0.07 TCGA-AQ-A7U7-01 X 36254934 36254934 T G CXorf30 5'UTR 0.06 TCGA-AQ-A7U7-01 X 84534432 84534432 G A POF1B Missense_Mutation p.P589S 0.12 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-AR-A0TP-01 10 102737980 102737980 G C MRPL43 3'Flank 0.41 TCGA-AR-A0TP-01 10 74684149 74684149 C A OIT3 Missense_Mutation p.L372I 0.06 tolerated(0.44) benign(0.168) TCGA-AR-A0TP-01 10 97919007 97919045 TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG - ZNF518A RNA 0.27 TCGA-AR-A0TP-01 11 10826524 10826524 A G EIF4G2 Missense_Mutation p.L96P 0.05 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TP-01 11 48347313 48347313 T C OR4C3 Missense_Mutation p.L274S 0.10 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-AR-A0TP-01 11 60165424 60165424 A T MS4A14 Missense_Mutation p.T80S 0.47 tolerated(0.34) benign(0.086) TCGA-AR-A0TP-01 12 109841786 109841786 G A MYO1H Splice_Site p.X235_splice 0.40 TCGA-AR-A0TP-01 12 20766614 20766614 G C PDE3A Missense_Mutation p.D417H 0.42 tolerated(0.07) possibly_damaging(0.707) TCGA-AR-A0TP-01 12 22035726 22035727 - G ABCC9 Frame_Shift_Ins p.A665Rfs*57 0.35 TCGA-AR-A0TP-01 12 4919815 4919815 G T KCNA6 Missense_Mutation p.G203V 0.45 tolerated(0.66) benign(0.092) TCGA-AR-A0TP-01 12 56115089 56115089 G T RDH5 Missense_Mutation p.G41W 0.53 deleterious(0) probably_damaging(1) TCGA-AR-A0TP-01 12 56755521 56755521 G T APOF Missense_Mutation p.Q157K 0.44 tolerated(0.46) benign(0.005) TCGA-AR-A0TP-01 12 75892906 75892906 T A KRR1 3'UTR 0.20 TCGA-AR-A0TP-01 13 37016315 37016315 C A CCNA1 Missense_Mutation p.T407N 0.10 tolerated(0.12) benign(0.15) TCGA-AR-A0TP-01 14 20781865 20781865 G C CCNB1IP1 Missense_Mutation p.S131R 0.47 tolerated(0.44) benign(0.045) TCGA-AR-A0TP-01 14 31637616 31637616 C T HECTD1 Missense_Mutation p.E504K 0.87 tolerated(0.25) benign(0.028) TCGA-AR-A0TP-01 14 67390979 67390979 C T GPHN Silent p.I266I 0.11 TCGA-AR-A0TP-01 16 2334368 2334368 C A ABCA3 Silent p.G1258G 0.41 TCGA-AR-A0TP-01 16 51173646 51173646 C T SALL1 Missense_Mutation p.M829I 0.44 tolerated(0.17) benign(0.002) TCGA-AR-A0TP-01 16 524975 524975 A - RAB11FIP3 Intron 0.38 TCGA-AR-A0TP-01 16 88782406 88782406 C T PIEZO1 Silent p.L2417L 0.24 TCGA-AR-A0TP-01 17 61949915 61949915 C A CSH2 Intron 0.92 TCGA-AR-A0TP-01 17 7577120 7577120 C G TP53 Missense_Mutation p.R273P 0.80 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TP-01 18 56985777 56985777 A C CPLX4 5'UTR 0.50 TCGA-AR-A0TP-01 18 6978265 6978265 A G LAMA1 Silent p.S2040S 0.41 TCGA-AR-A0TP-01 19 15730474 15730474 C A CYP4F8 RNA 0.47 TCGA-AR-A0TP-01 19 19905658 19905658 A G ZNF506 Silent p.C346C 0.51 TCGA-AR-A0TP-01 19 49004803 49004820 TGCGCAGGGCCAGGTCGC - LMTK3 Splice_Site p.X294_splice 0.30 TCGA-AR-A0TP-01 19 50157992 50157992 C G SCAF1 Silent p.P1161P 0.49 TCGA-AR-A0TP-01 19 52381666 52381666 T C ZNF577 Missense_Mutation p.N55D 0.46 deleterious(0.01) possibly_damaging(0.615) TCGA-AR-A0TP-01 19 9090622 9090622 C G MUC16 Missense_Mutation p.G398A 0.26 unknown(0) TCGA-AR-A0TP-01 1 149858815 149858815 G A HIST2H2AC Silent p.L97L 0.48 TCGA-AR-A0TP-01 1 151958603 151958603 A C S100A10 Missense_Mutation p.M35R 0.20 deleterious(0.01) benign(0.034) TCGA-AR-A0TP-01 1 152186053 152186053 A G HRNR Silent p.Y2684Y 0.54 TCGA-AR-A0TP-01 1 17982535 17982535 G A ARHGEF10L Silent p.P881P 0.44 TCGA-AR-A0TP-01 1 184764034 184764034 C A FAM129A 3'UTR 0.36 TCGA-AR-A0TP-01 1 211748727 211748727 G C SLC30A1 3'UTR 0.23 TCGA-AR-A0TP-01 1 235324683 235324683 G A RBM34 5'UTR 0.20 TCGA-AR-A0TP-01 1 32742302 32742302 G A LCK Silent p.K293K 0.44 TCGA-AR-A0TP-01 1 41098846 41098846 A T RIMS3 Missense_Mutation p.F123I 0.49 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-AR-A0TP-01 1 67635217 67635217 G T IL23R Missense_Mutation p.W88L 0.95 tolerated(0.2) possibly_damaging(0.803) TCGA-AR-A0TP-01 20 37400486 37400486 G A ACTR5 3'UTR 0.46 TCGA-AR-A0TP-01 21 47545207 47545207 G A COL6A2 Missense_Mutation p.E600K 0.81 tolerated(0.15) probably_damaging(0.993) TCGA-AR-A0TP-01 21 47783642 47783642 A G PCNT Missense_Mutation p.D801G 0.79 possibly_damaging(0.811) TCGA-AR-A0TP-01 22 30640840 30640840 A C LIF Missense_Mutation p.C34W 0.19 deleterious(0) probably_damaging(0.996) TCGA-AR-A0TP-01 22 38512192 38512210 TCAGACAGTGTCCCTGTCA - PLA2G6 Frame_Shift_Del p.L584Pfs*76 0.48 TCGA-AR-A0TP-01 2 166152454 166152454 C T SCN2A Missense_Mutation p.R41C 0.55 tolerated(0.06) possibly_damaging(0.761) TCGA-AR-A0TP-01 3 128204763 128204763 G C GATA2 Silent p.G226G 0.05 TCGA-AR-A0TP-01 3 130694222 130694222 T - ATP2C1 Frame_Shift_Del p.K522Sfs*13 0.23 TCGA-AR-A0TP-01 3 130947412 130947420 TGATGCATT - NEK11 In_Frame_Del p.A482_D484del 0.26 TCGA-AR-A0TP-01 3 138023764 138023764 C T NME9 Missense_Mutation p.V187I 0.25 tolerated(0.27) benign(0.002) TCGA-AR-A0TP-01 3 195513809 195513817 CTGTGGATG - MUC4 In_Frame_Del p.A1545_T1547del 0.39 TCGA-AR-A0TP-01 3 51812782 51812789 GCCTGCGG - IQCF6 Frame_Shift_Del p.R59Vfs*31 0.77 TCGA-AR-A0TP-01 4 119689345 119689345 C G SEC24D Missense_Mutation p.C388S 0.84 deleterious(0) probably_damaging(0.946) TCGA-AR-A0TP-01 4 166254530 166254530 C G MSMO1 Missense_Mutation p.T3R 0.95 deleterious_low_confidence(0.02) benign(0.038) TCGA-AR-A0TP-01 4 26685350 26685350 G T TBC1D19 Missense_Mutation p.L290F 0.80 deleterious(0.01) probably_damaging(0.989) TCGA-AR-A0TP-01 4 39864689 39864689 T G PDS5A Missense_Mutation p.E924A 0.44 deleterious(0.04) possibly_damaging(0.511) TCGA-AR-A0TP-01 4 42119673 42119673 G A BEND4 Silent p.D489D 0.41 TCGA-AR-A0TP-01 4 62812716 62812716 A - LPHN3 Frame_Shift_Del p.A768Lfs*19 0.46 TCGA-AR-A0TP-01 5 109202637 109202637 A G MAN2A1 Missense_Mutation p.N1125D 0.79 deleterious(0.05) probably_damaging(0.978) TCGA-AR-A0TP-01 5 118176639 118176639 T A DTWD2 Missense_Mutation p.E290D 0.92 deleterious(0.04) probably_damaging(0.916) TCGA-AR-A0TP-01 5 136974658 136974658 G C KLHL3 Silent p.G401G 0.83 TCGA-AR-A0TP-01 6 117609902 117609902 G C ROS1 Missense_Mutation p.T2266R 0.46 deleterious_low_confidence(0) possibly_damaging(0.829) TCGA-AR-A0TP-01 6 123126231 123126231 A G SMPDL3A Missense_Mutation p.K306E 0.28 tolerated(0.63) benign(0.005) TCGA-AR-A0TP-01 6 154428742 154428742 G A OPRM1 Intron 0.10 TCGA-AR-A0TP-01 6 43266022 43266022 T A SLC22A7 5'UTR 0.46 TCGA-AR-A0TP-01 6 50796376 50796376 G C TFAP2B Missense_Mutation p.Q195H 0.41 tolerated(0.08) benign(0.099) TCGA-AR-A0TP-01 6 51609274 51609274 C T PKHD1 Silent p.K3355K 0.31 TCGA-AR-A0TP-01 7 106786812 106786812 A G PRKAR2B Missense_Mutation p.D216G 0.48 deleterious(0) possibly_damaging(0.869) TCGA-AR-A0TP-01 7 47440029 47440029 C A TNS3 Missense_Mutation p.V294F 0.25 deleterious(0) possibly_damaging(0.905) TCGA-AR-A0TP-01 7 73474233 73474233 G C ELN Missense_Mutation p.G478R 0.46 unknown(0) TCGA-AR-A0TP-01 7 84671502 84671502 A - SEMA3D Frame_Shift_Del p.Y321Tfs*20 0.31 TCGA-AR-A0TP-01 8 110467029 110467029 T C PKHD1L1 Silent p.P2274P 0.26 TCGA-AR-A0TP-01 8 145748740 145748740 C T LRRC24 Missense_Mutation p.E221K 0.15 deleterious(0.02) benign(0.027) TCGA-AR-A0TP-01 8 77767858 77767858 A G ZFHX4 Missense_Mutation p.T2901A 0.26 probably_damaging(0.979) TCGA-AR-A0TP-01 9 116175849 116175849 G T C9orf43 Missense_Mutation p.A26S 0.17 deleterious(0.01) possibly_damaging(0.828) TCGA-AR-A0TP-01 9 37512576 37512576 T G FBXO10 Missense_Mutation p.S947R 0.59 deleterious(0.01) benign(0.051) TCGA-AR-A0TP-01 X 107976825 107976825 C A IRS4 Missense_Mutation p.S917I 0.49 deleterious(0.02) unknown(0) TCGA-AR-A0TP-01 X 117576637 117576637 G A WDR44 Missense_Mutation p.S793N 0.53 deleterious(0.02) probably_damaging(0.988) TCGA-AR-A0TP-01 X 135279072 135279072 T G FHL1 Intron 0.52 TCGA-AR-A0TP-01 X 73963226 73963226 C A KIAA2022 Missense_Mutation p.G389V 0.90 tolerated(0.39) benign(0.002) TCGA-AR-A0TP-01 X 80370453 80370453 C T HMGN5 Missense_Mutation p.G182R 0.80 tolerated(0.15) unknown(0) TCGA-AR-A0TQ-01 10 113915748 113915748 G C GPAM Missense_Mutation p.L729V 0.06 tolerated(0.16) possibly_damaging(0.786) TCGA-AR-A0TQ-01 10 115351970 115351970 T A NRAP Missense_Mutation p.R1543W 0.11 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TQ-01 10 115351971 115351971 A G NRAP Silent p.S1542S 0.11 TCGA-AR-A0TQ-01 10 63212895 63212895 G T TMEM26 5'UTR 0.23 TCGA-AR-A0TQ-01 10 76854523 76854523 C T DUSP13 Missense_Mutation p.A220T 0.10 tolerated(0.41) benign(0.006) TCGA-AR-A0TQ-01 10 79590037 79590037 C T DLG5 Silent p.P649P 0.26 TCGA-AR-A0TQ-01 10 8111503 8111504 - C GATA3 Frame_Shift_Ins p.R331Sfs*22 0.19 TCGA-AR-A0TQ-01 10 96025410 96025410 G A PLCE1 Missense_Mutation p.E1354K 0.10 deleterious(0) probably_damaging(1) TCGA-AR-A0TQ-01 11 60102443 60102443 G A MS4A6E Silent p.E25E 0.21 TCGA-AR-A0TQ-01 11 65146870 65146870 C A SLC25A45 Missense_Mutation p.G106C 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TQ-01 13 49852559 49852559 A C CDADC1 Missense_Mutation p.Y375S 0.26 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TQ-01 15 30011144 30011144 C T TJP1 Missense_Mutation p.D1068N 0.22 deleterious_low_confidence(0) benign(0.161) TCGA-AR-A0TQ-01 15 72767316 72767316 C T ARIH1 Silent p.H112H 0.38 TCGA-AR-A0TQ-01 15 91479663 91479663 G T UNC45A Silent p.R133R 0.19 TCGA-AR-A0TQ-01 16 11773412 11773412 C T TXNDC11 Missense_Mutation p.R839Q 0.38 tolerated(0.43) benign(0.004) TCGA-AR-A0TQ-01 16 25264349 25264349 G A ZKSCAN2 Missense_Mutation p.S199F 0.24 tolerated(0.24) possibly_damaging(0.718) TCGA-AR-A0TQ-01 17 4496467 4496467 G T SMTNL2 Splice_Site p.X244_splice 0.46 TCGA-AR-A0TQ-01 17 59876540 59876540 C T BRIP1 Missense_Mutation p.E421K 0.10 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TQ-01 17 62479061 62479061 C T POLG2 Missense_Mutation p.R389K 0.43 tolerated(0.42) benign(0.036) TCGA-AR-A0TQ-01 17 62479064 62479064 C T POLG2 Missense_Mutation p.G388E 0.44 deleterious(0) probably_damaging(0.992) TCGA-AR-A0TQ-01 19 16528407 16528407 C T EPS15L1 Silent p.V383V 0.15 TCGA-AR-A0TQ-01 19 36330506 36330506 C A NPHS1 Missense_Mutation p.R940L 0.10 deleterious(0.04) possibly_damaging(0.489) TCGA-AR-A0TQ-01 19 6971253 6971253 T A EMR4P RNA 0.50 TCGA-AR-A0TQ-01 19 9492460 9492460 T C ZNF177 3'UTR 0.21 TCGA-AR-A0TQ-01 1 157512693 157512693 C T FCRL5 Missense_Mutation p.G360D 0.35 deleterious(0.02) possibly_damaging(0.908) TCGA-AR-A0TQ-01 1 162737075 162737075 G C DDR2 Missense_Mutation p.A407P 0.18 deleterious(0) probably_damaging(0.964) TCGA-AR-A0TQ-01 1 190250843 190250843 C T BRINP3 Missense_Mutation p.E92K 0.08 deleterious(0) probably_damaging(0.988) TCGA-AR-A0TQ-01 20 44869879 44869879 G A CDH22 Silent p.D91D 0.09 TCGA-AR-A0TQ-01 20 46264755 46264755 C T NCOA3 Missense_Mutation p.S542L 0.28 deleterious(0.01) possibly_damaging(0.901) TCGA-AR-A0TQ-01 20 49197812 49197812 G C PTPN1 Missense_Mutation p.D367H 0.10 tolerated(0.06) possibly_damaging(0.88) TCGA-AR-A0TQ-01 20 49199359 49199359 G A PTPN1 3'UTR 0.13 TCGA-AR-A0TQ-01 20 49199460 49199460 G A PTPN1 3'UTR 0.15 TCGA-AR-A0TQ-01 20 50286635 50286635 C A ATP9A Missense_Mutation p.Q398H 0.11 deleterious(0) probably_damaging(0.951) TCGA-AR-A0TQ-01 20 62328432 62328432 T C TNFRSF6B Silent p.A104A 0.20 TCGA-AR-A0TQ-01 3 38751020 38751020 C A SCN10A Silent p.L1410L 0.12 TCGA-AR-A0TQ-01 4 2877718 2877718 G A ADD1 Missense_Mutation p.D26N 0.24 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TQ-01 5 131308520 131308520 C T ACSL6 Missense_Mutation p.R412H 0.12 deleterious(0.01) benign(0.024) TCGA-AR-A0TQ-01 5 156381720 156381720 C T TIMD4 Missense_Mutation p.V36M 0.22 deleterious(0) probably_damaging(1) TCGA-AR-A0TQ-01 5 67589627 67589627 G A PIK3R1 Missense_Mutation p.D464N 0.32 deleterious(0) possibly_damaging(0.905) TCGA-AR-A0TQ-01 6 10874605 10874605 C T GCM2 Missense_Mutation p.V382M 0.09 deleterious(0) probably_damaging(0.987) TCGA-AR-A0TQ-01 6 33545325 33545325 C T BAK1 Silent p.L19L 0.10 TCGA-AR-A0TQ-01 6 37247157 37247157 G A TBC1D22B Missense_Mutation p.R64Q 0.12 tolerated(0.34) benign(0.071) TCGA-AR-A0TQ-01 6 38750824 38750824 C G DNAH8 Missense_Mutation p.I551M 0.28 possibly_damaging(0.774) TCGA-AR-A0TQ-01 6 42231239 42231244 GGCGGA - TRERF1 In_Frame_Del p.P569_P570del 0.14 TCGA-AR-A0TQ-01 6 72678714 72678714 G T RIMS1 Missense_Mutation p.A65S 0.19 tolerated(0.5) probably_damaging(0.97) TCGA-AR-A0TQ-01 7 100780349 100780349 C T SERPINE1 Silent p.V385V 0.13 TCGA-AR-A0TQ-01 7 116165115 116165115 G T CAV1 5'UTR 0.12 TCGA-AR-A0TQ-01 7 136700644 136700644 G T CHRM2 Silent p.V344V 0.24 TCGA-AR-A0TQ-01 7 150439553 150439553 C T GIMAP5 Missense_Mutation p.P109L 0.12 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TQ-01 X 23019773 23019773 T A DDX53 Silent p.L533L 0.10 TCGA-AR-A0TQ-01 X 46332697 46332697 C T KRBOX4 3'UTR 0.14 TCGA-AR-A0TR-01 10 116335275 116335275 C T ABLIM1 Missense_Mutation p.G155R 0.49 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TR-01 10 124768562 124768562 T C ACADSB Missense_Mutation p.V6A 0.33 tolerated_low_confidence(0.47) benign(0.017) TCGA-AR-A0TR-01 10 70764802 70764802 G T KIAA1279 Missense_Mutation p.V176F 0.20 tolerated(0.08) benign(0.005) TCGA-AR-A0TR-01 11 130003552 130003552 A - APLP2 Frame_Shift_Del p.R539Gfs*15 0.25 TCGA-AR-A0TR-01 11 47350233 47350233 G A MADD Missense_Mutation p.S1606N 0.19 tolerated(0.17) benign(0.439) TCGA-AR-A0TR-01 12 45097587 45097587 T - NELL2 Frame_Shift_Del p.R464Efs*3 0.12 TCGA-AR-A0TR-01 12 49164616 49164616 G C ADCY6 Silent p.A1063A 0.35 TCGA-AR-A0TR-01 12 7045035 7045035 C T ATN1 Missense_Mutation p.T202I 0.63 benign(0.008) TCGA-AR-A0TR-01 14 97022708 97022708 A G PAPOLA Silent p.S654S 0.80 TCGA-AR-A0TR-01 15 43873257 43873257 C T PPIP5K1 Missense_Mutation p.G335D 0.50 deleterious(0) probably_damaging(1) TCGA-AR-A0TR-01 15 84539708 84539708 C G ADAMTSL3 Missense_Mutation p.F319L 0.55 tolerated(0.06) benign(0.045) TCGA-AR-A0TR-01 16 29756269 29756269 G T C16orf54 Missense_Mutation p.P2T 0.31 deleterious_low_confidence(0.01) benign(0.01) TCGA-AR-A0TR-01 16 89815165 89815165 G A FANCA Missense_Mutation p.R1084C 0.10 tolerated(0.07) possibly_damaging(0.689) TCGA-AR-A0TR-01 17 54872495 54872495 T C C17orf67 Missense_Mutation p.Q68R 0.19 tolerated(0.06) possibly_damaging(0.689) TCGA-AR-A0TR-01 17 60512605 60512606 - T METTL2A Frame_Shift_Ins p.V209Cfs*5 0.13 TCGA-AR-A0TR-01 17 76455082 76455082 C T DNAH17 Splice_Site p.X3273_splice 0.20 TCGA-AR-A0TR-01 18 52571554 52571554 G A CCDC68 3'UTR 0.14 TCGA-AR-A0TR-01 19 36883819 36883819 C T ZFP82 Missense_Mutation p.E475K 0.35 deleterious(0.05) probably_damaging(0.999) TCGA-AR-A0TR-01 19 49934639 49934639 G A SLC17A7 Missense_Mutation p.S406F 0.20 tolerated(0.41) benign(0.125) TCGA-AR-A0TR-01 19 52327735 52327735 C T FPR3 Missense_Mutation p.A245V 0.44 tolerated(0.06) possibly_damaging(0.562) TCGA-AR-A0TR-01 19 6413994 6413994 C A KHSRP 3'UTR 0.40 TCGA-AR-A0TR-01 19 8587693 8587693 G T MYO1F Missense_Mutation p.P959T 0.56 tolerated(0.13) benign(0.002) TCGA-AR-A0TR-01 1 111826008 111826008 G A CHIAP2 RNA 0.48 TCGA-AR-A0TR-01 1 157516743 157516743 A T FCRL5 Missense_Mutation p.D99E 0.55 tolerated(0.38) benign(0.012) TCGA-AR-A0TR-01 1 226421155 226421157 CTT - LIN9 In_Frame_Del p.E454del 0.15 TCGA-AR-A0TR-01 1 2267971 2267971 G A MORN1 Missense_Mutation p.S396F 0.27 deleterious(0.01) possibly_damaging(0.466) TCGA-AR-A0TR-01 1 241797975 241797975 T C CHML Missense_Mutation p.Q365R 0.28 tolerated(0.4) benign(0.001) TCGA-AR-A0TR-01 20 825502 825502 C T FAM110A Missense_Mutation p.R19C 0.88 deleterious(0) possibly_damaging(0.861) TCGA-AR-A0TR-01 21 35247757 35247757 C T ITSN1 Missense_Mutation p.R1425W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TR-01 2 153577066 153577066 G A ARL6IP6 Silent p.L140L 0.19 TCGA-AR-A0TR-01 2 173332209 173332209 C T ITGA6 Missense_Mutation p.A103V 0.22 tolerated(0.44) benign(0.049) TCGA-AR-A0TR-01 2 190719470 190719470 C T PMS1 Missense_Mutation p.S491L 0.47 tolerated(0.52) benign(0) TCGA-AR-A0TR-01 2 207572064 207572064 C T DYTN Silent p.P86P 0.18 TCGA-AR-A0TR-01 2 88387504 88387504 C T SMYD1 Silent p.D146D 0.22 TCGA-AR-A0TR-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.38 deleterious(0.01) probably_damaging(1) TCGA-AR-A0TR-01 3 47956413 47956413 C T MAP4 Silent p.T631T 0.19 TCGA-AR-A0TR-01 3 52556668 52556668 C T STAB1 Silent p.V2236V 0.15 TCGA-AR-A0TR-01 4 120182931 120182931 T A USP53 Missense_Mutation p.I295N 0.34 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TR-01 4 154669848 154669848 A G RNF175 Silent p.I65I 0.32 TCGA-AR-A0TR-01 4 188924860 188924860 C T ZFP42 Missense_Mutation p.A300V 0.26 tolerated(0.09) benign(0.028) TCGA-AR-A0TR-01 6 2949205 2949205 A T SERPINB6 Silent p.V224V 0.35 TCGA-AR-A0TR-01 6 42851236 42851236 A T RPL7L1 Silent p.L56L 0.37 TCGA-AR-A0TR-01 8 2092910 2092910 G C MYOM2 3'UTR 0.32 TCGA-AR-A0TR-01 8 21862543 21862543 A G XPO7 Missense_Mutation p.N1070D 0.29 tolerated(0.14) benign(0.25) TCGA-AR-A0TR-01 9 130270454 130270454 A T FAM129B Missense_Mutation p.V487E 0.30 deleterious(0) possibly_damaging(0.899) TCGA-AR-A0TR-01 X 75392961 75392961 C T PBDC1 5'UTR 0.29 TCGA-AR-A0TS-01 10 16943419 16943419 G C CUBN Missense_Mutation p.T2701R 0.10 tolerated(0.24) benign(0.003) TCGA-AR-A0TS-01 10 50959901 50959901 G A OGDHL Silent p.L241L 0.10 TCGA-AR-A0TS-01 10 5141532 5141532 G T AKR1C3 Missense_Mutation p.C154F 0.21 deleterious(0) probably_damaging(0.961) TCGA-AR-A0TS-01 11 36615435 36615435 C A RAG2 Missense_Mutation p.G95V 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TS-01 11 62292605 62292605 T C AHNAK Missense_Mutation p.D3095G 0.08 probably_damaging(0.947) TCGA-AR-A0TS-01 11 7335088 7335088 C A SYT9 Silent p.G320G 0.16 TCGA-AR-A0TS-01 11 86519666 86519667 - CAGCAG PRSS23 In_Frame_Ins p.Q329_Q330dup 0.26 TCGA-AR-A0TS-01 12 30888124 30888124 T G CAPRIN2 Missense_Mutation p.K196T 0.07 deleterious(0) possibly_damaging(0.635) TCGA-AR-A0TS-01 12 49177141 49177141 T C ADCY6 Missense_Mutation p.K26R 0.11 tolerated_low_confidence(0.19) benign(0.268) TCGA-AR-A0TS-01 13 46537938 46537938 G A ZC3H13 3'UTR 0.27 TCGA-AR-A0TS-01 13 84454496 84454496 G C SLITRK1 Missense_Mutation p.R383G 0.12 deleterious(0.02) benign(0.032) TCGA-AR-A0TS-01 14 65007625 65007625 G T HSPA2 Missense_Mutation p.G20W 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-AR-A0TS-01 15 63555911 63555911 G A RAB8B 3'UTR 0.36 TCGA-AR-A0TS-01 15 65347199 65347199 G T RASL12 3'UTR 0.16 TCGA-AR-A0TS-01 16 20812611 20812611 T A ERI2 Missense_Mutation p.Q125L 0.16 deleterious(0) benign(0.1) TCGA-AR-A0TS-01 16 2136343 2136343 C A TSC2 Silent p.G1604G 0.23 TCGA-AR-A0TS-01 16 23598615 23598615 C T NDUFAB1 Missense_Mutation p.C65Y 0.06 tolerated(0.15) benign(0.013) TCGA-AR-A0TS-01 16 23711935 23711935 A T ERN2 Missense_Mutation p.S532T 0.16 tolerated(0.14) benign(0.093) TCGA-AR-A0TS-01 16 3786202 3786202 A T CREBBP Missense_Mutation p.D1521E 0.06 unknown(0) TCGA-AR-A0TS-01 16 53338403 53338403 G C CHD9 Missense_Mutation p.G2162A 0.12 unknown(0) TCGA-AR-A0TS-01 16 625917 625917 C A PIGQ Missense_Mutation p.H256Q 0.14 tolerated(0.18) benign(0.021) TCGA-AR-A0TS-01 16 69922069 69922069 A C WWP2 Silent p.T277T 0.17 TCGA-AR-A0TS-01 16 70296374 70296374 C A AARS Missense_Mutation p.V516L 0.15 tolerated(0.2) benign(0.02) TCGA-AR-A0TS-01 17 5281509 5281517 AAAAGTGGA - RABEP1 In_Frame_Del p.V753_K755del 0.10 TCGA-AR-A0TS-01 17 73733472 73733494 AAGGTGACGGCGCCCCTGGGCCC - ITGB4 Frame_Shift_Del p.G688Qfs*63 0.17 TCGA-AR-A0TS-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.23 TCGA-AR-A0TS-01 17 76853709 76853709 G T TIMP2 Silent p.G120G 0.14 TCGA-AR-A0TS-01 18 47093896 47093896 G C LIPG Missense_Mutation p.D122H 0.12 deleterious(0) probably_damaging(0.971) TCGA-AR-A0TS-01 19 18423421 18423421 G A LSM4 Missense_Mutation p.T46M 0.07 deleterious(0) probably_damaging(0.961) TCGA-AR-A0TS-01 19 31769194 31769194 G C TSHZ3 Missense_Mutation p.S502C 0.06 tolerated(0.09) probably_damaging(0.998) TCGA-AR-A0TS-01 19 43430703 43430703 T A PSG7 Missense_Mutation p.N292I 0.08 tolerated(0.1) probably_damaging(0.988) TCGA-AR-A0TS-01 19 50548416 50548416 A T ZNF473 Missense_Mutation p.H239L 0.24 tolerated(0.65) benign(0.002) TCGA-AR-A0TS-01 19 51329009 51329009 G A KLK15 3'UTR 0.20 TCGA-AR-A0TS-01 19 53993978 53993978 G A ZNF813 Silent p.V164V 0.05 TCGA-AR-A0TS-01 19 55417945 55417945 G A NCR1 Silent p.V45V 0.14 TCGA-AR-A0TS-01 1 115236070 115236070 T A AMPD1 Splice_Site p.X41_splice 0.11 TCGA-AR-A0TS-01 1 12304463 12304463 A C VPS13D Silent p.A112A 0.08 TCGA-AR-A0TS-01 1 152188455 152188455 A T HRNR Missense_Mutation p.Y1884N 0.03 unknown(0) TCGA-AR-A0TS-01 1 155313175 155313175 G A ASH1L Silent p.L2741L 0.13 TCGA-AR-A0TS-01 1 156884624 156884624 C A PEAR1 3'UTR 0.15 TCGA-AR-A0TS-01 1 158261905 158261905 T G CD1C Missense_Mutation p.C120W 0.08 deleterious(0) probably_damaging(1) TCGA-AR-A0TS-01 1 161134356 161134356 T - USP21 Frame_Shift_Del p.S446Rfs*5 0.18 TCGA-AR-A0TS-01 1 169673765 169673765 T C SELL Missense_Mutation p.E250G 0.17 tolerated(0.31) benign(0.033) TCGA-AR-A0TS-01 1 175365771 175365771 C T TNR Silent p.T383T 0.14 TCGA-AR-A0TS-01 1 186325525 186325525 C T TPR Missense_Mutation p.R594H 0.12 possibly_damaging(0.522) TCGA-AR-A0TS-01 1 204408104 204408104 A G PIK3C2B Missense_Mutation p.W1159R 0.20 deleterious(0) probably_damaging(1) TCGA-AR-A0TS-01 1 23240001 23240001 A G EPHB2 Missense_Mutation p.I968V 0.12 deleterious(0.01) possibly_damaging(0.814) TCGA-AR-A0TS-01 1 242271141 242271141 C T PLD5 Silent p.R357R 0.10 TCGA-AR-A0TS-01 1 24859683 24859683 C T RCAN3 Silent p.S160S 0.12 TCGA-AR-A0TS-01 1 57537214 57537214 C T DAB1 Missense_Mutation p.C180Y 0.04 deleterious(0) probably_damaging(0.964) TCGA-AR-A0TS-01 1 94639535 94639535 C A ARHGAP29 Missense_Mutation p.D1226Y 0.13 deleterious_low_confidence(0.01) benign(0.001) TCGA-AR-A0TS-01 20 3649962 3649962 G C ADAM33 Silent p.V796V 0.12 TCGA-AR-A0TS-01 22 29534646 29534646 T C KREMEN1 Silent p.A333A 0.20 TCGA-AR-A0TS-01 2 17902510 17902510 G A SMC6 Missense_Mutation p.R249C 0.24 deleterious(0) benign(0.052) TCGA-AR-A0TS-01 2 191896213 191896213 C G STAT4 Missense_Mutation p.G692R 0.08 deleterious(0.03) benign(0.038) TCGA-AR-A0TS-01 2 25040582 25040582 T A CENPO Silent p.S270S 0.09 TCGA-AR-A0TS-01 2 65315732 65315732 C G RAB1A Missense_Mutation p.E171D 0.19 tolerated(0.45) benign(0.002) TCGA-AR-A0TS-01 2 74135881 74135881 C T ACTG2 Missense_Mutation p.P113S 0.15 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AR-A0TS-01 2 85768459 85768459 G C MAT2A Missense_Mutation p.R84P 0.04 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TS-01 3 101051876 101051876 T A SENP7 Intron 0.16 TCGA-AR-A0TS-01 3 101298683 101298683 C T PCNP Silent p.S38S 0.05 TCGA-AR-A0TS-01 3 130098667 130098667 G A COL6A5 Silent p.A358A 0.21 TCGA-AR-A0TS-01 3 148875176 148875176 A C HPS3 Missense_Mutation p.S517R 0.12 deleterious(0.04) probably_damaging(0.975) TCGA-AR-A0TS-01 3 58095016 58095016 G C FLNB Missense_Mutation p.W722C 0.07 tolerated(0.1) probably_damaging(1) TCGA-AR-A0TS-01 3 8988959 8988959 C T RAD18 Missense_Mutation p.D71N 0.10 deleterious(0) probably_damaging(0.986) TCGA-AR-A0TS-01 4 104098112 104098112 T G CENPE Missense_Mutation p.N445T 0.19 benign(0.043) TCGA-AR-A0TS-01 4 155287566 155287566 G - DCHS2 Frame_Shift_Del p.R164Vfs*7 0.14 TCGA-AR-A0TS-01 4 156764876 156764876 G A ASIC5 Missense_Mutation p.S273L 0.14 tolerated(0.34) benign(0.042) TCGA-AR-A0TS-01 4 169305901 169305901 G C DDX60L Missense_Mutation p.I1326M 0.05 deleterious(0) possibly_damaging(0.861) TCGA-AR-A0TS-01 4 175429850 175429850 C A HPGD Missense_Mutation p.A140S 0.08 deleterious(0.03) possibly_damaging(0.875) TCGA-AR-A0TS-01 4 6718627 6718627 G A BLOC1S4 3'UTR 0.38 TCGA-AR-A0TS-01 5 32601185 32601185 C T SUB1 Silent p.L127L 0.13 TCGA-AR-A0TS-01 5 484729 484729 T G SLC9A3 Missense_Mutation p.K280Q 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A0TS-01 6 12123822 12123822 G A HIVEP1 Missense_Mutation p.R1265H 0.07 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TS-01 6 122775305 122775305 A G SERINC1 Missense_Mutation p.F148L 0.12 deleterious(0.05) probably_damaging(1) TCGA-AR-A0TS-01 6 36275560 36275560 C T PNPLA1 3'UTR 0.23 TCGA-AR-A0TS-01 6 42629951 42629951 G A UBR2 Missense_Mutation p.D1158N 0.13 tolerated(0.06) benign(0.011) TCGA-AR-A0TS-01 6 55381374 55381374 C A HMGCLL1 Missense_Mutation p.G139C 0.06 deleterious(0) probably_damaging(0.965) TCGA-AR-A0TS-01 7 122808460 122808460 C A SLC13A1 Missense_Mutation p.G210W 0.06 tolerated(0.05) possibly_damaging(0.852) TCGA-AR-A0TS-01 7 146997363 146997363 C T CNTNAP2 Silent p.G493G 0.06 TCGA-AR-A0TS-01 7 2740317 2740317 C G AMZ1 Missense_Mutation p.Q78E 0.17 tolerated(1) benign(0.001) TCGA-AR-A0TS-01 7 97944905 97944905 G C BAIAP2L1 Missense_Mutation p.S169C 0.11 deleterious(0.02) possibly_damaging(0.521) TCGA-AR-A0TS-01 8 144126108 144126108 G C C8orf31 Missense_Mutation p.D77H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-AR-A0TS-01 8 25365051 25365051 C G CDCA2 Missense_Mutation p.P957A 0.14 tolerated(0.3) benign(0) TCGA-AR-A0TS-01 8 54791869 54791869 G A RGS20 Missense_Mutation p.G73S 0.27 tolerated_low_confidence(1) benign(0.005) TCGA-AR-A0TS-01 8 6873582 6873582 G C DEFA3 Missense_Mutation p.A72G 0.09 tolerated(0.33) benign(0.075) TCGA-AR-A0TS-01 8 77766549 77766549 G A ZFHX4 Silent p.S2464S 0.10 TCGA-AR-A0TS-01 8 94748065 94748065 G A RBM12B Nonsense_Mutation p.R192* 0.12 TCGA-AR-A0TS-01 9 100405483 100405483 C T NCBP1 Intron 0.09 TCGA-AR-A0TS-01 9 113066792 113066792 G T TXNDC8 Silent p.I92I 0.09 TCGA-AR-A0TS-01 9 120475224 120475224 A C TLR4 Missense_Mutation p.D273A 0.06 deleterious(0.02) possibly_damaging(0.667) TCGA-AR-A0TS-01 9 140970313 140970313 C T CACNA1B Missense_Mutation p.R1634C 0.26 deleterious(0) probably_damaging(0.995) TCGA-AR-A0TS-01 9 5732480 5732480 G A KIAA1432 Splice_Site p.X271_splice 0.06 TCGA-AR-A0TS-01 X 18631363 18631363 C A CDKL5 Missense_Mutation p.N748K 0.14 tolerated_low_confidence(0.07) benign(0.403) TCGA-AR-A0TS-01 X 53172234 53172234 G A LINC01155 RNA 0.14 TCGA-AR-A0TT-01 10 24908483 24908483 C A ARHGAP21 Missense_Mutation p.V781F 0.10 tolerated(0.11) probably_damaging(0.965) TCGA-AR-A0TT-01 10 76735170 76735170 G A KAT6B Missense_Mutation p.D359N 0.11 probably_damaging(0.985) TCGA-AR-A0TT-01 11 107663404 107663404 C - SLC35F2 Frame_Shift_Del p.I355Lfs*6 0.14 TCGA-AR-A0TT-01 11 67934424 67934424 T G SUV420H1 Intron 0.09 TCGA-AR-A0TT-01 11 75902837 75902837 G A WNT11 Missense_Mutation p.R221C 0.59 deleterious(0) probably_damaging(0.91) TCGA-AR-A0TT-01 11 89536963 89536963 T A TRIM49 Splice_Site p.X138_splice 0.10 TCGA-AR-A0TT-01 12 12815194 12815194 C T GPR19 Silent p.G63G 0.13 TCGA-AR-A0TT-01 13 100617556 100617556 C T ZIC5 3'UTR 0.15 TCGA-AR-A0TT-01 13 25486735 25486735 A T CENPJ Missense_Mutation p.F143L 0.09 tolerated(0.83) benign(0.012) TCGA-AR-A0TT-01 13 35733981 35733982 TT - NBEA Frame_Shift_Del p.L1225Sfs*5 0.27 TCGA-AR-A0TT-01 14 34243738 34243738 T C NPAS3 Splice_Site p.X349_splice 0.27 TCGA-AR-A0TT-01 15 101565157 101565157 G C LRRK1 Missense_Mutation p.W739C 0.09 deleterious(0) probably_damaging(1) TCGA-AR-A0TT-01 15 101971646 101971646 C T PCSK6 Missense_Mutation p.R178H 0.04 tolerated(0.57) benign(0.008) TCGA-AR-A0TT-01 15 84241415 84241415 C T SH3GL3 Nonsense_Mutation p.Q144* 0.05 TCGA-AR-A0TT-01 16 11856531 11856531 G A ZC3H7A Missense_Mutation p.A692V 0.21 tolerated(0.09) benign(0.006) TCGA-AR-A0TT-01 16 48595370 48595370 C G N4BP1 Missense_Mutation p.R395T 0.14 tolerated(0.18) benign(0.003) TCGA-AR-A0TT-01 16 48595699 48595699 C G N4BP1 Missense_Mutation p.R285S 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TT-01 16 4862091 4862093 GAA - GLYR1 In_Frame_Del p.F426del 0.09 TCGA-AR-A0TT-01 16 813660 813660 G A MSLN Missense_Mutation p.G50R 0.17 tolerated(0.42) benign(0.007) TCGA-AR-A0TT-01 16 88880888 88880888 G T GALNS Missense_Mutation p.P510T 0.35 tolerated_low_confidence(0.34) benign(0.018) TCGA-AR-A0TT-01 17 16075115 16075115 A G NCOR1 Splice_Site p.X145_splice 0.26 TCGA-AR-A0TT-01 17 4850142 4850142 A C PFN1 Intron 0.27 TCGA-AR-A0TT-01 17 48701886 48701886 G T CACNA1G Missense_Mutation p.R2132L 0.42 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TT-01 17 57289786 57289786 G A SMG8 Missense_Mutation p.R615K 0.13 tolerated(0.16) benign(0.047) TCGA-AR-A0TT-01 17 57290231 57290231 G A SMG8 Missense_Mutation p.E683K 0.08 tolerated(0.34) possibly_damaging(0.76) TCGA-AR-A0TT-01 17 76851797 76851797 G A TIMP2 Silent p.R205R 0.36 TCGA-AR-A0TT-01 17 8050807 8050807 A G PER1 Missense_Mutation p.I493T 0.16 deleterious(0) probably_damaging(0.978) TCGA-AR-A0TT-01 18 48447486 48447486 G C ME2 Missense_Mutation p.E329Q 0.16 tolerated(0.24) possibly_damaging(0.902) TCGA-AR-A0TT-01 19 3765204 3765204 C T MRPL54 Silent p.S53S 0.25 TCGA-AR-A0TT-01 19 40354004 40354004 G A FCGBP 3'UTR 0.22 TCGA-AR-A0TT-01 19 50983986 50983986 C T EMC10 Missense_Mutation p.S184L 0.24 deleterious(0.01) possibly_damaging(0.503) TCGA-AR-A0TT-01 19 56423854 56423854 G A NLRP13 Silent p.Y443Y 0.21 TCGA-AR-A0TT-01 1 110050505 110050505 T C AMIGO1 Missense_Mutation p.M344V 0.27 tolerated(1) benign(0) TCGA-AR-A0TT-01 1 151804201 151804201 C T RORC Missense_Mutation p.E14K 0.12 tolerated(0.19) benign(0.017) TCGA-AR-A0TT-01 1 185240497 185240497 C G SWT1 Silent p.L828L 0.05 TCGA-AR-A0TT-01 1 185984313 185984313 A T HMCN1 Silent p.G1551G 0.07 TCGA-AR-A0TT-01 1 196659293 196659293 C T CFH Silent p.Y420Y 0.09 TCGA-AR-A0TT-01 1 213341271 213341271 T C RPS6KC1 Silent p.S302S 0.06 TCGA-AR-A0TT-01 1 237947265 237947265 A C RYR2 Missense_Mutation p.K4085Q 0.15 benign(0.011) TCGA-AR-A0TT-01 1 247769184 247769184 G A OR2G3 Silent p.A99A 0.25 TCGA-AR-A0TT-01 1 26393958 26393958 C T TRIM63 Missense_Mutation p.D10N 0.19 deleterious(0.01) benign(0.357) TCGA-AR-A0TT-01 1 27276594 27276594 G C C1orf172 Missense_Mutation p.S388W 0.06 deleterious(0) probably_damaging(1) TCGA-AR-A0TT-01 1 29481326 29481326 T C SRSF4 Missense_Mutation p.K154E 0.14 tolerated(0.13) benign(0.444) TCGA-AR-A0TT-01 1 66102608 66102608 G A LEPR Silent p.K1136K 0.04 TCGA-AR-A0TT-01 2 128848885 128848885 C A UGGT1 5'UTR 0.16 TCGA-AR-A0TT-01 2 159514765 159514765 G A PKP4 Missense_Mutation p.D678N 0.26 deleterious(0.03) benign(0.089) TCGA-AR-A0TT-01 2 73901054 73901054 G A ALMS1P RNA 0.10 TCGA-AR-A0TT-01 3 107097354 107097354 G C CCDC54 Missense_Mutation p.C307S 0.09 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TT-01 3 122146488 122146488 A T KPNA1 Silent p.V442V 0.13 TCGA-AR-A0TT-01 3 195506434 195506434 G A MUC4 Missense_Mutation p.T4006I 0.43 possibly_damaging(0.841) TCGA-AR-A0TT-01 3 52558835 52558835 C T NT5DC2 Silent p.L470L 0.12 TCGA-AR-A0TT-01 3 54959105 54959105 G A LRTM1 Missense_Mutation p.P49S 0.15 deleterious(0.05) probably_damaging(0.989) TCGA-AR-A0TT-01 4 169379152 169379152 G C DDX60L Missense_Mutation p.T205R 0.13 tolerated(0.47) benign(0) TCGA-AR-A0TT-01 4 169847386 169847386 G A PALLD 3'UTR 0.07 TCGA-AR-A0TT-01 4 1962801 1962801 G A WHSC1 Missense_Mutation p.E1099K 0.04 deleterious(0) probably_damaging(0.996) TCGA-AR-A0TT-01 4 56765860 56765860 T G EXOC1 Missense_Mutation p.V716G 0.14 tolerated(0.13) possibly_damaging(0.898) TCGA-AR-A0TT-01 5 10227578 10227578 T C FAM173B Missense_Mutation p.H226R 0.12 tolerated_low_confidence(0.45) benign(0) TCGA-AR-A0TT-01 5 140237004 140237004 C T PCDHA10 Silent p.S457S 0.22 TCGA-AR-A0TT-01 5 140720475 140720475 T A PCDHGA2 Missense_Mutation p.I646N 0.19 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-AR-A0TT-01 5 149265830 149265830 C G PDE6A Missense_Mutation p.M612I 0.12 tolerated(0.09) probably_damaging(0.954) TCGA-AR-A0TT-01 5 156899386 156899386 C T NIPAL4 Silent p.L273L 0.32 TCGA-AR-A0TT-01 5 180659804 180659804 G A TRIM41 Missense_Mutation p.R352H 0.07 tolerated(0.28) benign(0.002) TCGA-AR-A0TT-01 6 28358993 28358993 A C ZSCAN12 Nonsense_Mutation p.Y358* 0.24 TCGA-AR-A0TT-01 6 32190439 32190439 G A NOTCH4 Silent p.S100S 0.12 TCGA-AR-A0TT-01 6 42147050 42147050 G A GUCA1A Missense_Mutation p.R172Q 0.20 tolerated(0.1) benign(0.004) TCGA-AR-A0TT-01 7 143929644 143929644 G A OR2A42 Missense_Mutation p.T98M 0.19 tolerated(0.75) benign(0.002) TCGA-AR-A0TT-01 7 48431556 48431556 C T ABCA13 Missense_Mutation p.T3898I 0.10 benign(0.227) TCGA-AR-A0TT-01 8 126073396 126073396 T G KIAA0196 Silent p.I483I 0.17 TCGA-AR-A0TT-01 8 41166417 41166417 C T SFRP1 Missense_Mutation p.A88T 0.15 tolerated(0.17) probably_damaging(0.915) TCGA-AR-A0TT-01 9 16419369 16419369 C T BNC2 Missense_Mutation p.S973N 0.18 deleterious(0.03) possibly_damaging(0.549) TCGA-AR-A0TT-01 9 35060330 35060330 C T VCP Missense_Mutation p.V559I 0.08 tolerated(0.34) possibly_damaging(0.695) TCGA-AR-A0TT-01 9 84547991 84547991 A C RP11-383M4.6 Intron 0.15 TCGA-AR-A0TT-01 X 106069286 106069286 A T TBC1D8B Missense_Mutation p.E285V 0.12 deleterious(0) probably_damaging(0.968) TCGA-AR-A0TT-01 X 135445680 135445680 A T GPR112 Missense_Mutation p.K2441M 0.23 deleterious(0.03) possibly_damaging(0.558) TCGA-AR-A0TT-01 X 152227030 152227030 C T PNMA3 3'UTR 0.26 TCGA-AR-A0TT-01 X 153696287 153696287 C A PLXNA3 Missense_Mutation p.R1255S 0.18 tolerated(0.13) probably_damaging(0.997) TCGA-AR-A0TT-01 X 18622913 18622913 G A CDKL5 Silent p.K623K 0.08 TCGA-AR-A0TT-01 X 65822561 65822561 C T EDA2R Missense_Mutation p.S144N 0.08 deleterious(0.05) benign(0.133) TCGA-AR-A0TU-01 10 38408140 38408140 G C ZNF37A 3'UTR 0.33 TCGA-AR-A0TU-01 10 60553276 60553276 G A BICC1 Missense_Mutation p.M360I 0.23 tolerated(0.33) benign(0.007) TCGA-AR-A0TU-01 10 91177984 91177984 A G IFIT5 Missense_Mutation p.D343G 0.39 tolerated(0.27) benign(0.128) TCGA-AR-A0TU-01 10 99220677 99220677 G A MMS19 Missense_Mutation p.T800I 0.45 deleterious(0.02) benign(0.005) TCGA-AR-A0TU-01 11 111594891 111594891 G T SIK2 3'UTR 0.67 TCGA-AR-A0TU-01 11 111789707 111789707 G C C11orf52 Missense_Mutation p.R4P 0.65 deleterious(0.04) probably_damaging(0.914) TCGA-AR-A0TU-01 11 117376295 117376295 C T DSCAML1 Missense_Mutation p.E706K 0.09 tolerated(0.24) benign(0.371) TCGA-AR-A0TU-01 11 118765373 118765373 G T BCL9L 3'UTR 0.54 TCGA-AR-A0TU-01 11 93778958 93778958 T C HEPHL1 Missense_Mutation p.L97P 0.07 deleterious(0) probably_damaging(0.992) TCGA-AR-A0TU-01 12 129299465 129299465 C G SLC15A4 Missense_Mutation p.V233L 0.08 tolerated(0.74) benign(0.017) TCGA-AR-A0TU-01 12 21919255 21919255 C T KCNJ8 Missense_Mutation p.R226H 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-AR-A0TU-01 12 56398436 56398436 G A SUOX Silent p.Q421Q 0.62 TCGA-AR-A0TU-01 12 5674793 5674793 G T ANO2 Missense_Mutation p.N886K 0.31 tolerated(0.15) possibly_damaging(0.828) TCGA-AR-A0TU-01 12 75441951 75441951 C T KCNC2 Missense_Mutation p.D588N 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-AR-A0TU-01 14 105945815 105945815 C G CRIP2 Missense_Mutation p.L256V 0.62 deleterious(0.04) probably_damaging(0.994) TCGA-AR-A0TU-01 14 54896977 54896977 A C CNIH1 Splice_Site p.X136_splice 0.39 TCGA-AR-A0TU-01 14 58604819 58604826 CTCCCGTA - C14orf37 Frame_Shift_Del p.S417Rfs*25 0.16 TCGA-AR-A0TU-01 14 75329523 75329523 G T PROX2 Intron 0.62 TCGA-AR-A0TU-01 14 95029869 95029869 T A SERPINA4 Missense_Mutation p.L17H 0.80 deleterious(0.03) unknown(0) TCGA-AR-A0TU-01 15 28446656 28446656 T A HERC2 Silent p.R2554R 0.61 TCGA-AR-A0TU-01 15 41195138 41195138 C T VPS18 Missense_Mutation p.R841W 0.62 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TU-01 15 62172909 62172909 G C VPS13C Missense_Mutation p.Q3301E 0.59 tolerated(0.76) benign(0.008) TCGA-AR-A0TU-01 15 74003666 74003666 C A CD276 Intron 0.58 TCGA-AR-A0TU-01 16 89113291 89113297 GTCCGGT - CTD-2555A7.2 RNA 0.50 TCGA-AR-A0TU-01 16 9857875 9857875 C A GRIN2A Nonsense_Mutation p.E1176* 0.78 TCGA-AR-A0TU-01 17 31415915 31415915 C T ASIC2 Missense_Mutation p.G318E 0.55 deleterious(0) probably_damaging(1) TCGA-AR-A0TU-01 17 39740663 39740663 T C KRT14 Missense_Mutation p.Y204C 0.69 deleterious(0) probably_damaging(0.992) TCGA-AR-A0TU-01 17 5336330 5336330 C G C1QBP 3'UTR 0.64 TCGA-AR-A0TU-01 17 72469868 72469868 G C CD300A Missense_Mutation p.R78S 0.11 tolerated(0.06) possibly_damaging(0.497) TCGA-AR-A0TU-01 17 78326840 78326840 G T RNF213 Silent p.A3468A 0.18 TCGA-AR-A0TU-01 17 9546583 9546583 C G WDR16 3'UTR 0.63 TCGA-AR-A0TU-01 18 21481288 21481288 G T LAMA3 Splice_Site p.X2067_splice 0.40 TCGA-AR-A0TU-01 18 56415127 56415127 G A MALT1 3'UTR 0.80 TCGA-AR-A0TU-01 19 52531614 52531614 G A ZNF614 5'UTR 0.77 TCGA-AR-A0TU-01 19 57649909 57649909 G C ZIM3 Missense_Mutation p.L25V 0.63 deleterious(0.01) probably_damaging(0.976) TCGA-AR-A0TU-01 19 6183236 6183236 C T ACSBG2 Silent p.S425S 0.48 TCGA-AR-A0TU-01 1 186321122 186321122 G T TPR Missense_Mutation p.L819M 0.34 possibly_damaging(0.665) TCGA-AR-A0TU-01 1 206650162 206650162 C T IKBKE Missense_Mutation p.R228W 0.23 deleterious(0) probably_damaging(1) TCGA-AR-A0TU-01 1 215953193 215953193 G A USH2A Missense_Mutation p.T3644M 0.45 possibly_damaging(0.75) TCGA-AR-A0TU-01 1 227333330 227333344 CTATTCCATTTTGAC - CDC42BPA In_Frame_Del p.G330_I334del 0.40 TCGA-AR-A0TU-01 1 243727042 243727042 G C AKT3 Missense_Mutation p.P310A 0.29 deleterious(0.01) possibly_damaging(0.734) TCGA-AR-A0TU-01 1 29069325 29069325 C T YTHDF2 Silent p.G181G 0.39 TCGA-AR-A0TU-01 1 32691906 32691906 G A EIF3I Missense_Mutation p.D129N 0.53 tolerated(0.18) benign(0.038) TCGA-AR-A0TU-01 1 32849538 32849538 C T BSDC1 Missense_Mutation p.V101M 0.45 deleterious(0.02) probably_damaging(0.917) TCGA-AR-A0TU-01 1 38185168 38185168 T G EPHA10 Silent p.R892R 0.29 TCGA-AR-A0TU-01 1 40525103 40525103 C G CAP1 Missense_Mutation p.R29G 0.43 tolerated(0.62) benign(0.002) TCGA-AR-A0TU-01 1 54722839 54722839 G A SSBP3 Silent p.Y156Y 0.34 TCGA-AR-A0TU-01 1 95303336 95303336 T A SLC44A3 Silent p.V193V 0.07 TCGA-AR-A0TU-01 20 43036067 43036067 C G HNF4A Missense_Mutation p.R113G 0.60 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TU-01 22 30057312 30057312 C A NF2 Nonsense_Mutation p.S265* 0.60 TCGA-AR-A0TU-01 22 50688545 50688545 C T HDAC10 Silent p.Q112Q 0.57 TCGA-AR-A0TU-01 2 202590162 202590162 T C ALS2 Silent p.R1088R 0.62 TCGA-AR-A0TU-01 2 70931513 70931513 G A ADD2 Nonsense_Mutation p.R88* 0.61 TCGA-AR-A0TU-01 2 97267392 97267392 G A KANSL3 Silent p.P868P 0.40 TCGA-AR-A0TU-01 3 110852796 110852796 G A PVRL3 Missense_Mutation p.E462K 0.50 tolerated(0.1) benign(0.074) TCGA-AR-A0TU-01 3 122811242 122811242 G A PDIA5 Silent p.V70V 0.71 TCGA-AR-A0TU-01 3 170015134 170015134 G C PRKCI Missense_Mutation p.A514P 0.73 tolerated(0.21) probably_damaging(0.998) TCGA-AR-A0TU-01 3 42678448 42678448 C A NKTR Missense_Mutation p.L418I 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-AR-A0TU-01 3 78734951 78734951 C A ROBO1 Missense_Mutation p.Q429H 0.53 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TU-01 4 26491054 26491054 G A CCKAR Silent p.S55S 0.65 TCGA-AR-A0TU-01 4 47453448 47453448 A G COMMD8 3'UTR 0.32 TCGA-AR-A0TU-01 4 54231620 54231620 A T SCFD2 Silent p.V163V 0.28 TCGA-AR-A0TU-01 4 62903446 62903446 T C LPHN3 Intron 0.37 TCGA-AR-A0TU-01 4 6863899 6863899 G C KIAA0232 Missense_Mutation p.S597T 0.69 tolerated(0.17) probably_damaging(0.997) TCGA-AR-A0TU-01 5 109200756 109200756 A G MAN2A1 Missense_Mutation p.N1064S 0.59 tolerated(0.35) benign(0.005) TCGA-AR-A0TU-01 5 159344505 159344531 CCGAAGAACCCTTCTATGCCCTCTTCT - ADRA1B In_Frame_Del p.E199_S207del 0.68 TCGA-AR-A0TU-01 5 176980253 176980253 C A FAM193B Intron 0.91 TCGA-AR-A0TU-01 5 35727923 35727923 G C SPEF2 Missense_Mutation p.E1021Q 0.54 tolerated(0.26) probably_damaging(0.994) TCGA-AR-A0TU-01 6 114277211 114277215 TAACG - HDAC2 Nonsense_Mutation p.Y153* 0.54 TCGA-AR-A0TU-01 6 133032939 133032939 C A VNN1 Missense_Mutation p.G84C 0.11 deleterious(0) probably_damaging(0.989) TCGA-AR-A0TU-01 6 154763259 154763259 T A CNKSR3 Missense_Mutation p.I128F 0.50 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TU-01 6 155750119 155750119 C T NOX3 Silent p.A318A 0.38 TCGA-AR-A0TU-01 6 31704323 31704323 G C CLIC1 Intron 0.54 TCGA-AR-A0TU-01 6 49937333 49937333 C G DEFB113 Missense_Mutation p.K2N 0.62 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-AR-A0TU-01 7 13946060 13946060 C G ETV1 Missense_Mutation p.E369Q 0.62 deleterious(0.03) probably_damaging(0.999) TCGA-AR-A0TU-01 7 148709414 148709419 TTCTCA - PDIA4 Nonsense_Mutation p.Y216_K218delins* 0.50 TCGA-AR-A0TU-01 7 27168912 27168918 TTTGTGC - HOXA4 Frame_Shift_Del p.A297Lfs*55 0.48 TCGA-AR-A0TU-01 7 95726876 95726876 G A DYNC1I1 Missense_Mutation p.E637K 0.53 deleterious(0.02) probably_damaging(0.993) TCGA-AR-A0TU-01 7 95818665 95818665 G A SLC25A13 Missense_Mutation p.R292W 0.42 deleterious(0) possibly_damaging(0.696) TCGA-AR-A0TU-01 8 103572897 103572898 TG - ODF1 Frame_Shift_Del p.V181Gfs*2 0.27 TCGA-AR-A0TU-01 8 110655355 110655355 T A SYBU Intron 0.29 TCGA-AR-A0TU-01 8 133854785 133854785 C G PHF20L1 Missense_Mutation p.L805V 0.06 deleterious(0) benign(0.025) TCGA-AR-A0TU-01 9 33917121 33917121 C G UBE2R2 Missense_Mutation p.N201K 0.51 tolerated(0.22) benign(0.039) TCGA-AR-A0TU-01 9 35711758 35711758 G C TLN1 Missense_Mutation p.A1238G 0.69 tolerated(0.13) benign(0.396) TCGA-AR-A0TU-01 9 77435320 77435320 T G TRPM6 Missense_Mutation p.E345A 0.31 tolerated(0.12) benign(0.081) TCGA-AR-A0TU-01 9 77745491 77745491 C T OSTF1 Intron 0.43 TCGA-AR-A0TU-01 9 79320287 79320287 G C PRUNE2 Missense_Mutation p.H2301Q 0.39 deleterious(0.01) possibly_damaging(0.86) TCGA-AR-A0TU-01 X 104728375 104728375 G T IL1RAPL2 Missense_Mutation p.Q256H 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-AR-A0TU-01 X 140969432 140969432 A G MAGEC3 Silent p.V253V 0.26 TCGA-AR-A0TU-01 X 148798474 148798474 G T MAGEA11 3'UTR 0.32 TCGA-AR-A0TU-01 X 149639246 149639246 C A MAMLD1 Silent p.G442G 0.55 TCGA-AR-A0TU-01 X 150844587 150844587 A G PASD1 Missense_Mutation p.E765G 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-AR-A0TU-01 X 154159895 154159895 A G F8 Silent p.L724L 0.59 TCGA-AR-A0TU-01 X 154194287 154194287 G C F8 Missense_Mutation p.I467M 0.11 deleterious(0) possibly_damaging(0.791) TCGA-AR-A0TU-01 X 57358158 57358158 T C FAAH2 Silent p.C180C 0.37 TCGA-AR-A0TU-01 X 69459753 69459753 C T AWAT1 Silent p.L267L 0.29 TCGA-AR-A0TU-01 X 70149842 70149842 C T SLC7A3 Silent p.P2P 0.38 TCGA-AR-A0TU-01 X 84526405 84526405 C A ZNF711 Missense_Mutation p.H619Q 0.52 deleterious(0) probably_damaging(0.994) TCGA-AR-A0TV-01 10 85961584 85961584 G A CDHR1 Missense_Mutation p.V183M 0.64 tolerated(0.32) benign(0.041) TCGA-AR-A0TV-01 10 98807512 98807512 C T SLIT1 Silent p.V523V 0.24 TCGA-AR-A0TV-01 11 119027378 119027378 G A ABCG4 Silent p.P305P 0.68 TCGA-AR-A0TV-01 11 28042770 28042770 T C KIF18A Missense_Mutation p.I892V 0.37 tolerated(0.43) benign(0.055) TCGA-AR-A0TV-01 11 654013 654013 C AT DEAF1 Frame_Shift_Ins p.C515Lfs*43 0.39 TCGA-AR-A0TV-01 11 92592359 92592359 C G FAT3 Missense_Mutation p.N3843K 0.37 probably_damaging(0.997) TCGA-AR-A0TV-01 11 93800913 93800913 C A HEPHL1 Missense_Mutation p.Q354K 0.23 tolerated(0.57) benign(0.304) TCGA-AR-A0TV-01 12 105150997 105150997 G A CHST11 Missense_Mutation p.A159T 0.42 tolerated(0.22) benign(0.006) TCGA-AR-A0TV-01 12 122361879 122361879 A G WDR66 Missense_Mutation p.T244A 0.18 tolerated(1) benign(0) TCGA-AR-A0TV-01 12 15475620 15475620 C T PTPRO 5'UTR 0.56 TCGA-AR-A0TV-01 12 48179477 48179477 C T AC004466.1 3'UTR 0.46 TCGA-AR-A0TV-01 12 51586227 51586227 C T POU6F1 Missense_Mutation p.V93M 0.12 tolerated(0.13) benign(0.008) TCGA-AR-A0TV-01 14 24728371 24728371 C G TGM1 Missense_Mutation p.G357R 0.36 deleterious(0) probably_damaging(1) TCGA-AR-A0TV-01 14 58811468 58811468 A G ARID4A Missense_Mutation p.K321R 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A0TV-01 14 65543344 65543344 C T MAX Silent p.L111L 0.55 TCGA-AR-A0TV-01 15 40856990 40856990 C G C15orf57 5'UTR 0.24 TCGA-AR-A0TV-01 16 30410052 30410052 G A ZNF48 Missense_Mutation p.R494Q 0.16 deleterious(0.05) possibly_damaging(0.665) TCGA-AR-A0TV-01 16 77323239 77323239 A C ADAMTS18 Missense_Mutation p.S1158A 0.27 tolerated(0.51) benign(0.008) TCGA-AR-A0TV-01 17 15978874 15978874 T C NCOR1 Missense_Mutation p.K1215R 0.35 probably_damaging(0.991) TCGA-AR-A0TV-01 17 19700794 19700794 G A ULK2 Missense_Mutation p.P575L 0.51 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TV-01 17 21318946 21318946 T A KCNJ12 Missense_Mutation p.F98I 0.22 deleterious(0) probably_damaging(0.959) TCGA-AR-A0TV-01 17 29683975 29683975 C G NF1 Intron 0.75 TCGA-AR-A0TV-01 17 58124731 58124731 G C HEATR6 Missense_Mutation p.S903C 0.77 deleterious(0.01) benign(0.016) TCGA-AR-A0TV-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.72 deleterious(0) probably_damaging(1) TCGA-AR-A0TV-01 19 15839451 15839451 G A OR10H2 Missense_Mutation p.V200M 0.37 deleterious(0.02) benign(0.411) TCGA-AR-A0TV-01 19 21992605 21992605 C T ZNF43 Missense_Mutation p.M78I 0.22 tolerated(0.61) benign(0.009) TCGA-AR-A0TV-01 19 54265645 54265645 G T MIR519A2 RNA 0.15 TCGA-AR-A0TV-01 19 7711185 7711185 C G STXBP2 Silent p.T469T 0.26 TCGA-AR-A0TV-01 19 7794763 7794763 G A CLEC4G Silent p.R229R 0.27 TCGA-AR-A0TV-01 1 147230643 147230643 C T GJA5 Missense_Mutation p.R235K 0.17 tolerated(0.78) benign(0.002) TCGA-AR-A0TV-01 1 153800546 153800546 C T GATAD2B Missense_Mutation p.G93E 0.22 tolerated(1) benign(0.002) TCGA-AR-A0TV-01 1 154516476 154516476 C T TDRD10 Nonsense_Mutation p.R181* 0.41 TCGA-AR-A0TV-01 1 158577079 158577079 T - OR10Z1 Frame_Shift_Del p.L284Pfs*9 0.26 TCGA-AR-A0TV-01 1 16272281 16272281 A C ZBTB17 Missense_Mutation p.L197R 0.36 tolerated_low_confidence(0.36) benign(0.332) TCGA-AR-A0TV-01 1 166962031 166962031 C T MAEL Missense_Mutation p.S145F 0.42 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TV-01 1 175372322 175372322 C T TNR Silent p.G310G 0.41 TCGA-AR-A0TV-01 1 190250765 190250765 G A BRINP3 Missense_Mutation p.P118S 0.38 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TV-01 1 66098839 66098839 C T LEPR Intron 0.37 TCGA-AR-A0TV-01 20 33575438 33575438 T C MYH7B Missense_Mutation p.V451A 0.52 probably_damaging(0.913) TCGA-AR-A0TV-01 20 33580963 33580963 G A MYH7B Missense_Mutation p.A790T 0.27 possibly_damaging(0.897) TCGA-AR-A0TV-01 22 20784108 20784108 C T SCARF2 Silent p.T405T 0.38 TCGA-AR-A0TV-01 2 132258945 132258945 C T AC093838.4 RNA 0.43 TCGA-AR-A0TV-01 2 152409230 152409230 G T NEB Missense_Mutation p.P6598T 0.47 probably_damaging(1) TCGA-AR-A0TV-01 2 153032209 153032209 G A STAM2 5'UTR 0.31 TCGA-AR-A0TV-01 2 204016280 204016280 A G NBEAL1 Missense_Mutation p.H1823R 0.31 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TV-01 2 204305920 204305920 C T RAPH1 Missense_Mutation p.V665I 0.20 benign(0.153) TCGA-AR-A0TV-01 2 224642566 224642566 G T AP1S3 Missense_Mutation p.F8L 0.49 tolerated(0.3) probably_damaging(0.997) TCGA-AR-A0TV-01 2 233323663 233323663 C T ALPI Missense_Mutation p.A465V 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-AR-A0TV-01 2 29294240 29294240 G A C2orf71 Missense_Mutation p.S963F 0.34 deleterious(0.02) possibly_damaging(0.807) TCGA-AR-A0TV-01 2 74454651 74454651 A - SLC4A5 Frame_Shift_Del p.L986Rfs*12 0.26 TCGA-AR-A0TV-01 3 113128161 113128161 C G WDR52 Missense_Mutation p.E228Q 0.36 deleterious(0.01) benign(0.11) TCGA-AR-A0TV-01 3 186502374 186502374 G A EIF4A2 Missense_Mutation p.D33N 0.36 tolerated(0.06) benign(0.011) TCGA-AR-A0TV-01 3 33434069 33434071 AAT - UBP1 In_Frame_Del p.L523del 0.32 TCGA-AR-A0TV-01 3 61989043 61989043 G C PTPRG Missense_Mutation p.D131H 0.18 deleterious(0) possibly_damaging(0.667) TCGA-AR-A0TV-01 4 109745145 109745145 A G COL25A1 Intron 0.34 TCGA-AR-A0TV-01 4 123202754 123202754 T A KIAA1109 Silent p.V2954V 0.12 TCGA-AR-A0TV-01 4 170634389 170634389 T G CLCN3 Missense_Mutation p.I770S 0.36 deleterious(0.03) possibly_damaging(0.904) TCGA-AR-A0TV-01 4 187454827 187454827 G A MTNR1A 3'UTR 0.17 TCGA-AR-A0TV-01 5 111643142 111643142 C T EPB41L4A Missense_Mutation p.V49I 0.21 tolerated(0.36) benign(0.001) TCGA-AR-A0TV-01 5 135223973 135223973 G T SLC25A48 3'UTR 0.56 TCGA-AR-A0TV-01 5 141243846 141243846 G A PCDH1 Nonsense_Mutation p.Q684* 0.33 TCGA-AR-A0TV-01 5 147793787 147793787 A T FBXO38 Silent p.A394A 0.24 TCGA-AR-A0TV-01 5 24593491 24593491 A T CDH10 Missense_Mutation p.L37I 0.20 tolerated(0.42) benign(0.007) TCGA-AR-A0TV-01 5 88057005 88057005 C A MEF2C Intron 0.55 TCGA-AR-A0TV-01 6 30691970 30691970 C T TUBB Silent p.L377L 0.28 TCGA-AR-A0TV-01 6 350830 350830 G A DUSP22 Missense_Mutation p.G173R 0.07 tolerated_low_confidence(0.26) benign(0.005) TCGA-AR-A0TV-01 6 62611156 62611156 G T KHDRBS2 Missense_Mutation p.P202T 0.30 tolerated(0.45) benign(0.004) TCGA-AR-A0TV-01 7 55229270 55229270 G C EGFR Missense_Mutation p.C526S 0.26 deleterious(0) probably_damaging(0.966) TCGA-AR-A0TV-01 7 55990862 55990862 T G MRPS17 Missense_Mutation p.L19R 0.19 deleterious_low_confidence(0) unknown(0) TCGA-AR-A0TV-01 8 110587877 110587877 T C SYBU Missense_Mutation p.E417G 0.08 tolerated(0.37) benign(0.024) TCGA-AR-A0TV-01 8 54142245 54142245 C T OPRK1 Missense_Mutation p.R252H 0.41 deleterious(0) probably_damaging(1) TCGA-AR-A0TV-01 8 79601467 79601467 A G ZC2HC1A Silent p.Q121Q 0.11 TCGA-AR-A0TV-01 8 88885211 88885211 G A DCAF4L2 Missense_Mutation p.A330V 0.12 tolerated(1) benign(0) TCGA-AR-A0TV-01 8 91836960 91836960 C A NECAB1 Missense_Mutation p.S47Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TV-01 8 95795914 95795914 G A DPY19L4 Missense_Mutation p.A578T 0.08 tolerated(0.52) benign(0.094) TCGA-AR-A0TV-01 9 100819126 100819126 G A NANS Nonsense_Mutation p.W12* 0.45 TCGA-AR-A0TV-01 9 112705755 112705755 C G PALM2 3'Flank 0.42 TCGA-AR-A0TV-01 X 155255118 155255118 C T WASH6P RNA 0.30 TCGA-AR-A0TV-01 X 228257 228257 G A GTPBP6 Silent p.A89A 0.24 TCGA-AR-A0TV-01 X 44091738 44091738 T A EFHC2 Missense_Mutation p.N537Y 0.34 deleterious(0) possibly_damaging(0.781) TCGA-AR-A0TV-01 X 47464683 47464683 G T SYN1 Missense_Mutation p.A208D 0.21 deleterious(0) probably_damaging(0.985) TCGA-AR-A0TV-01 X 49019251 49019251 C T MAGIX Silent p.A8A 0.22 TCGA-AR-A0TV-01 X 69639547 69639547 G A KIF4A Missense_Mutation p.E1137K 0.34 tolerated_low_confidence(0.07) benign(0.422) TCGA-AR-A0TW-01 10 8115853 8115854 - G GATA3 Frame_Shift_Ins p.S402Vfs*106 0.26 TCGA-AR-A0TW-01 11 43352111 43352111 C G API5 Missense_Mutation p.I425M 0.37 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TW-01 11 5626735 5626735 C T TRIM6 Silent p.L258L 0.15 TCGA-AR-A0TW-01 11 92533961 92533961 T C FAT3 Silent p.N2594N 0.23 TCGA-AR-A0TW-01 12 129373285 129373285 G T GLT1D1 Missense_Mutation p.A107S 0.44 tolerated(0.09) possibly_damaging(0.567) TCGA-AR-A0TW-01 13 114202762 114202762 C T TMCO3 Missense_Mutation p.R639W 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A0TW-01 14 37180577 37180577 G C SLC25A21 Missense_Mutation p.N183K 0.31 deleterious(0) probably_damaging(1) TCGA-AR-A0TW-01 14 70924295 70924295 G A ADAM21 Missense_Mutation p.G27S 0.12 tolerated(0.16) benign(0.048) TCGA-AR-A0TW-01 15 101555571 101555571 A G LRRK1 Missense_Mutation p.T525A 0.16 deleterious(0.05) benign(0.005) TCGA-AR-A0TW-01 15 101555577 101555577 A T LRRK1 Nonsense_Mutation p.R527* 0.17 TCGA-AR-A0TW-01 15 22332581 22332581 C A RP11-69H14.6 RNA 0.19 TCGA-AR-A0TW-01 15 90321409 90321409 T A MESP2 Missense_Mutation p.S346R 0.33 tolerated_low_confidence(0.11) benign(0.216) TCGA-AR-A0TW-01 16 10031859 10031859 C A GRIN2A Missense_Mutation p.G322W 0.14 deleterious(0) probably_damaging(0.969) TCGA-AR-A0TW-01 16 3432988 3432988 T C ZSCAN32 Missense_Mutation p.K441R 0.17 tolerated(1) benign(0.105) TCGA-AR-A0TW-01 16 58610448 58610448 T C CNOT1 Silent p.A541A 0.19 TCGA-AR-A0TW-01 17 15965036 15965036 T A NCOR1 Nonsense_Mutation p.R1854* 0.64 TCGA-AR-A0TW-01 17 25639270 25639270 C G WSB1 Missense_Mutation p.P381A 0.08 deleterious(0) probably_damaging(0.994) TCGA-AR-A0TW-01 17 25639314 25639314 C G WSB1 Missense_Mutation p.I395M 0.04 deleterious(0.01) possibly_damaging(0.813) TCGA-AR-A0TW-01 17 46878982 46878982 C T TTLL6 Missense_Mutation p.G129S 0.54 deleterious(0) probably_damaging(0.991) TCGA-AR-A0TW-01 17 64783253 64783253 C T PRKCA Intron 0.13 TCGA-AR-A0TW-01 17 65688755 65688755 C T PITPNC1 Silent p.G250G 0.03 TCGA-AR-A0TW-01 17 74004924 74004924 G A EVPL Silent p.P1454P 0.61 TCGA-AR-A0TW-01 18 22805247 22805247 C T ZNF521 Missense_Mutation p.V879I 0.28 tolerated(0.64) benign(0.029) TCGA-AR-A0TW-01 19 51480873 51480873 G C KLK7 Silent p.G227G 0.15 TCGA-AR-A0TW-01 19 53572793 53572793 G A ZNF160 Missense_Mutation p.R332W 0.19 tolerated(0.09) probably_damaging(0.914) TCGA-AR-A0TW-01 1 103463920 103463920 C A COL11A1 Splice_Site p.X715_splice 0.15 TCGA-AR-A0TW-01 1 158225118 158225118 C T CD1A Silent p.Y101Y 0.19 TCGA-AR-A0TW-01 1 182025629 182025629 C A ZNF648 Missense_Mutation p.C506F 0.15 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TW-01 1 227235647 227235647 G C CDC42BPA Nonsense_Mutation p.S990* 0.10 TCGA-AR-A0TW-01 1 62979452 62979452 A C DOCK7 Missense_Mutation p.S1321A 0.38 tolerated(0.18) benign(0.02) TCGA-AR-A0TW-01 1 75683550 75683550 C T SLC44A5 Splice_Site p.X542_splice 0.43 TCGA-AR-A0TW-01 1 76276451 76276451 A - MSH4 Frame_Shift_Del p.N220Ifs*8 0.32 TCGA-AR-A0TW-01 20 4778717 4778721 AAGAG - RASSF2 Frame_Shift_Del p.L24Afs*10 0.09 TCGA-AR-A0TW-01 20 60902626 60902626 C T LAMA5 Missense_Mutation p.A1633T 0.60 benign(0.004) TCGA-AR-A0TW-01 20 61827934 61827939 GACAAG TACAA YTHDF1 3'UTR 0.37 TCGA-AR-A0TW-01 20 61833786 61833786 G A YTHDF1 Silent p.V502V 0.34 TCGA-AR-A0TW-01 20 61834026 61834026 G A YTHDF1 Silent p.D422D 0.33 TCGA-AR-A0TW-01 20 61834086 61834086 G C YTHDF1 Missense_Mutation p.I402M 0.14 deleterious(0) probably_damaging(0.936) TCGA-AR-A0TW-01 22 38120742 38120742 C T TRIOBP Missense_Mutation p.R727W 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-AR-A0TW-01 2 111806831 111806831 G T ACOXL Missense_Mutation p.C469F 0.25 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TW-01 2 198361901 198361901 C A HSPD1 Missense_Mutation p.K130N 0.22 tolerated(0.63) benign(0.015) TCGA-AR-A0TW-01 2 220473425 220473425 G T STK11IP Missense_Mutation p.R586L 0.21 deleterious(0) probably_damaging(0.994) TCGA-AR-A0TW-01 2 74128459 74128459 C T ACTG2 Silent p.T7T 0.25 TCGA-AR-A0TW-01 3 113176140 113176140 G A SPICE1 Silent p.F500F 0.19 TCGA-AR-A0TW-01 3 142525092 142525092 A G TRPC1 3'UTR 0.33 TCGA-AR-A0TW-01 3 38596022 38596022 T G SCN5A Missense_Mutation p.I1521L 0.29 tolerated(0.28) benign(0.001) TCGA-AR-A0TW-01 3 49053694 49053694 C T DALRD3 Missense_Mutation p.R409H 0.30 deleterious(0) probably_damaging(1) TCGA-AR-A0TW-01 3 9730630 9730630 C T MTMR14 Nonsense_Mutation p.R433* 0.27 TCGA-AR-A0TW-01 3 9974346 9974346 C A IL17RC Missense_Mutation p.A552E 0.28 tolerated(0.12) possibly_damaging(0.566) TCGA-AR-A0TW-01 4 177077232 177077232 G T WDR17 Missense_Mutation p.W845C 0.14 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TW-01 4 27024689 27024689 C A STIM2 3'UTR 0.23 TCGA-AR-A0TW-01 4 39297290 39297290 C T RFC1 Silent p.S967S 0.12 TCGA-AR-A0TW-01 4 80328163 80328163 C T GK2 Missense_Mutation p.E398K 0.13 deleterious(0) probably_damaging(1) TCGA-AR-A0TW-01 5 137476527 137476527 C T BRD8 Missense_Mutation p.R1161Q 0.20 tolerated(0.41) benign(0.013) TCGA-AR-A0TW-01 5 140262304 140262304 C T PCDHA13 Nonsense_Mutation p.R151* 0.16 TCGA-AR-A0TW-01 5 153065885 153065885 G A GRIA1 Missense_Mutation p.R387Q 0.19 tolerated(0.23) benign(0.066) TCGA-AR-A0TW-01 5 175763760 175763760 C T SIMC1 Missense_Mutation p.R303C 0.27 deleterious(0) probably_damaging(0.961) TCGA-AR-A0TW-01 6 108093385 108093385 G C SCML4 Silent p.P49P 0.11 TCGA-AR-A0TW-01 6 33136507 33136507 G A COL11A2 Silent p.G1208G 0.21 TCGA-AR-A0TW-01 6 51524412 51524412 C A PKHD1 Missense_Mutation p.Q3504H 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-AR-A0TW-01 7 92732742 92732742 G T SAMD9 Missense_Mutation p.T890N 0.36 tolerated(0.61) benign(0.003) TCGA-AR-A0TW-01 7 93551340 93551340 G A GNG11 5'UTR 0.29 TCGA-AR-A0TW-01 8 26484767 26484767 G A DPYSL2 Missense_Mutation p.A193T 0.14 deleterious(0) probably_damaging(0.946) TCGA-AR-A0TW-01 8 52287216 52287216 C A PXDNL Silent p.V1211V 0.19 TCGA-AR-A0TW-01 X 135445675 135445675 G T GPR112 Missense_Mutation p.K2439N 0.17 deleterious(0.01) benign(0.392) TCGA-AR-A0TW-01 X 153668377 153668377 G C GDI1 Missense_Mutation p.G160R 0.38 deleterious(0.01) possibly_damaging(0.766) TCGA-AR-A0TW-01 X 153993215 153993215 A G DKC1 Missense_Mutation p.K20E 0.20 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-AR-A0TW-01 X 18593511 18593511 T G CDKL5 Silent p.L61L 0.10 TCGA-AR-A0TW-01 X 48244879 48244879 C T SSX4 Silent p.H90H 0.07 TCGA-AR-A0TW-01 X 7868809 7868809 C T PNPLA4 Missense_Mutation p.S227N 0.12 tolerated(0.43) benign(0.002) TCGA-AR-A0TW-01 X 7868810 7868810 T A PNPLA4 Missense_Mutation p.S227C 0.12 deleterious(0.03) benign(0.008) TCGA-AR-A0TX-01 10 101606856 101606856 G A ABCC2 Missense_Mutation p.E1429K 0.13 deleterious(0.02) benign(0.053) TCGA-AR-A0TX-01 10 103699622 103699622 G A C10orf76 Silent p.I593I 0.17 TCGA-AR-A0TX-01 10 105143101 105143101 C T TAF5 Silent p.Y547Y 0.13 TCGA-AR-A0TX-01 10 127371574 127371574 G C TEX36 5'UTR 0.20 TCGA-AR-A0TX-01 10 14977484 14977484 C G DCLRE1C Missense_Mutation p.E148Q 0.17 deleterious(0.04) possibly_damaging(0.714) TCGA-AR-A0TX-01 10 27412521 27412521 C G YME1L1 Missense_Mutation p.E410Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TX-01 10 46143787 46143787 T C ZFAND4 Missense_Mutation p.D175G 0.25 tolerated_low_confidence(0.79) benign(0) TCGA-AR-A0TX-01 10 50030439 50030439 C A WDFY4 Missense_Mutation p.Q1947K 0.14 tolerated(1) benign(0.055) TCGA-AR-A0TX-01 10 61029863 61029863 G T FAM13C Nonsense_Mutation p.S200* 0.19 TCGA-AR-A0TX-01 10 62038849 62038849 C G ANK3 Missense_Mutation p.E92Q 0.18 probably_damaging(0.999) TCGA-AR-A0TX-01 10 88946909 88946909 G A FAM35A Missense_Mutation p.E754K 0.19 deleterious(0) probably_damaging(0.981) TCGA-AR-A0TX-01 11 103156999 103156999 C G DYNC2H1 Missense_Mutation p.L3643V 0.17 benign(0.233) TCGA-AR-A0TX-01 11 110104054 110104054 C G RDX Missense_Mutation p.E499Q 0.18 deleterious(0.02) probably_damaging(0.952) TCGA-AR-A0TX-01 11 113558770 113558770 G A TMPRSS5 3'UTR 0.19 TCGA-AR-A0TX-01 11 118344572 118344572 C T KMT2A Nonsense_Mutation p.Q900* 0.15 TCGA-AR-A0TX-01 11 124805830 124805830 G A HEPACAM Silent p.L25L 0.21 TCGA-AR-A0TX-01 11 125769890 125769890 G C HYLS1 Missense_Mutation p.K209N 0.19 deleterious(0) probably_damaging(0.998) TCGA-AR-A0TX-01 11 17531162 17531162 G A USH1C Missense_Mutation p.S585F 0.44 deleterious_low_confidence(0.01) benign(0.224) TCGA-AR-A0TX-01 11 209437 209437 G T RIC8A Nonsense_Mutation p.E55* 0.23 TCGA-AR-A0TX-01 11 26581226 26581226 C G MUC15 3'UTR 0.16 TCGA-AR-A0TX-01 11 46893148 46893148 C G LRP4 Missense_Mutation p.E1540D 0.16 tolerated(0.09) benign(0.314) TCGA-AR-A0TX-01 11 47178576 47178576 T - C11orf49 Frame_Shift_Del p.F152Sfs*21 0.23 TCGA-AR-A0TX-01 11 47434989 47434989 C G SLC39A13 Silent p.L192L 0.21 TCGA-AR-A0TX-01 11 55681414 55681414 G A OR5W2 Silent p.F215F 0.22 TCGA-AR-A0TX-01 11 59554516 59554516 G A STX3 Missense_Mutation p.E41K 0.15 deleterious(0.01) benign(0.444) TCGA-AR-A0TX-01 11 59554572 59554572 C G STX3 Silent p.L59L 0.24 TCGA-AR-A0TX-01 11 59814505 59814505 G A OOSP2 Missense_Mutation p.E146K 0.20 tolerated(0.12) benign(0.158) TCGA-AR-A0TX-01 11 61099077 61099077 G A DDB1 Missense_Mutation p.R50W 0.28 deleterious(0.01) probably_damaging(0.964) TCGA-AR-A0TX-01 11 6232761 6232761 G A FAM160A2 Missense_Mutation p.S979L 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AR-A0TX-01 11 63273811 63273811 G A LGALS12 5'Flank 0.16 TCGA-AR-A0TX-01 11 63486546 63486546 C A RTN3 Nonsense_Mutation p.S191* 0.14 TCGA-AR-A0TX-01 11 66026285 66026285 G A KLC2 Missense_Mutation p.E74K 0.17 deleterious(0) probably_damaging(0.983) TCGA-AR-A0TX-01 11 6661191 6661191 C T DCHS1 Missense_Mutation p.D552N 0.25 deleterious(0) probably_damaging(0.993) TCGA-AR-A0TX-01 11 73584201 73584201 C T COA4 Missense_Mutation p.E75K 0.22 deleterious(0.01) possibly_damaging(0.899) TCGA-AR-A0TX-01 11 788469 788469 C T CEND1 Silent p.L36L 0.19 TCGA-AR-A0TX-01 11 86519317 86519317 C T PRSS23 Missense_Mutation p.S211L 0.12 tolerated(0.15) benign(0.004) TCGA-AR-A0TX-01 11 94129617 94129617 G C GPR83 Nonsense_Mutation p.S154* 0.26 TCGA-AR-A0TX-01 12 113595577 113595577 C G DDX54 3'UTR 0.24 TCGA-AR-A0TX-01 12 113754439 113754439 G A SLC8B1 Silent p.F295F 0.23 TCGA-AR-A0TX-01 12 121151105 121151105 C G UNC119B Missense_Mutation p.I91M 0.25 deleterious(0) possibly_damaging(0.817) TCGA-AR-A0TX-01 12 123069500 123069500 G A KNTC1 Missense_Mutation p.R1166K 0.21 tolerated(0.13) probably_damaging(0.931) TCGA-AR-A0TX-01 12 124362321 124362321 G A DNAH10 Silent p.L2628L 0.31 TCGA-AR-A0TX-01 12 15774268 15774271 CATC ATT EPS8 Frame_Shift_Del p.D817Nfs*13 0.24 TCGA-AR-A0TX-01 12 18573885 18573885 C G PIK3C2G Missense_Mutation p.Q735E 0.11 deleterious(0.01) possibly_damaging(0.531) TCGA-AR-A0TX-01 12 22086720 22086720 C G ABCC9 Missense_Mutation p.D94H 0.13 deleterious(0.02) possibly_damaging(0.854) TCGA-AR-A0TX-01 12 32791666 32791666 G A FGD4 Silent p.Q660Q 0.23 TCGA-AR-A0TX-01 12 46245928 46245928 C G ARID2 Nonsense_Mutation p.S1341* 0.13 TCGA-AR-A0TX-01 12 53585257 53585257 C T ITGB7 3'UTR 0.31 TCGA-AR-A0TX-01 12 551212 551212 G C CCDC77 3'UTR 0.17 TCGA-AR-A0TX-01 12 56118164 56118164 G A RDH5 Silent p.V264V 0.18 TCGA-AR-A0TX-01 12 56487147 56487147 G C ERBB3 Missense_Mutation p.L431F 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A0TX-01 12 56526236 56526236 G A ESYT1 Missense_Mutation p.R339Q 0.20 tolerated(1) benign(0.004) TCGA-AR-A0TX-01 12 57032079 57032079 G C ATP5B 3'UTR 0.16 TCGA-AR-A0TX-01 12 59274492 59274492 C T LRIG3 Missense_Mutation p.E558K 0.12 tolerated(0.08) probably_damaging(0.968) TCGA-AR-A0TX-01 12 64827313 64827313 G A XPOT Silent p.L794L 0.04 TCGA-AR-A0TX-01 12 65085268 65085268 C G RASSF3 Nonsense_Mutation p.S159* 0.05 TCGA-AR-A0TX-01 12 6575548 6575548 G C VAMP1 Intron 0.21 TCGA-AR-A0TX-01 12 663141 663141 G A B4GALNT3 Silent p.R684R 0.23 TCGA-AR-A0TX-01 12 66698517 66698517 T C HELB Missense_Mutation p.I65T 0.05 deleterious(0) possibly_damaging(0.894) TCGA-AR-A0TX-01 12 69980585 69980585 G A CCT2 Missense_Mutation p.G44E 0.07 deleterious(0) probably_damaging(1) TCGA-AR-A0TX-01 12 70760601 70760601 C A KCNMB4 Silent p.V29V 0.10 TCGA-AR-A0TX-01 12 72026676 72026676 T C ZFC3H1 Missense_Mutation p.D936G 0.36 tolerated(0.33) benign(0.084) TCGA-AR-A0TX-01 12 72307641 72307641 C G TBC1D15 Missense_Mutation p.L463V 0.11 tolerated(0.37) benign(0.005) TCGA-AR-A0TX-01 13 114529991 114529991 G A GAS6 Silent p.F485F 0.26 TCGA-AR-A0TX-01 13 21331700 21331700 G C N6AMT2 Missense_Mutation p.S13C 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-AR-A0TX-01 13 25459796 25459796 C T CENPJ Missense_Mutation p.R1105Q 0.14 tolerated(0.14) benign(0.033) TCGA-AR-A0TX-01 13 37583533 37583533 C G SUPT20H 3'Flank 0.11 TCGA-AR-A0TX-01 13 80125187 80125187 C G NDFIP2 Missense_Mutation p.L315V 0.24 tolerated(0.12) probably_damaging(0.963) TCGA-AR-A0TX-01 14 20915315 20915315 C G OSGEP 3'UTR 0.20 TCGA-AR-A0TX-01 14 21460707 21460707 G A METTL17 Missense_Mutation p.E152K 0.19 tolerated(0.17) benign(0.085) TCGA-AR-A0TX-01 14 21551001 21551001 C T ARHGEF40 Silent p.F1166F 0.20 TCGA-AR-A0TX-01 14 21991732 21991732 G A SALL2 Silent p.V710V 0.25 TCGA-AR-A0TX-01 14 22133492 22133492 C T OR4E2 Silent p.L66L 0.15 TCGA-AR-A0TX-01 14 35554936 35554936 G C PPP2R3C Missense_Mutation p.L408V 0.16 deleterious(0) possibly_damaging(0.7) TCGA-AR-A0TX-01 14 35568480 35568480 G C PPP2R3C Missense_Mutation p.F228L 0.24 deleterious(0.01) probably_damaging(1) TCGA-AR-A0TX-01 14 35742871 35742871 G A KIAA0391 3'UTR 0.23 TCGA-AR-A0TX-01 14 64496655 64496655 T A SYNE2 Missense_Mutation p.S2253T 0.18 benign(0.032) TCGA-AR-A0TX-01 14 64630264 64630264 G A SYNE2 Missense_Mutation p.E5482K 0.26 probably_damaging(0.999) TCGA-AR-A0TX-01 14 74062026 74062026 G C ACOT4 Missense_Mutation p.E312Q 0.26 deleterious(0.02) probably_damaging(0.992) TCGA-AR-A0TX-01 14 79270156 79270156 G A NRXN3 Missense_Mutation p.M373I 0.18 deleterious(0.02) possibly_damaging(0.593) TCGA-AR-A0TX-01 14 80971345 80971345 C A CEP128 Nonsense_Mutation p.E1031* 0.14 TCGA-AR-A0TX-01 15 29415586 29415586 C G FAM189A1 Missense_Mutation p.E526Q 0.32 deleterious(0) benign(0.077) TCGA-AR-A0TX-01 15 44068711 44068711 C T ELL3 Missense_Mutation p.R55Q 0.26 tolerated(0.54) probably_damaging(0.953) TCGA-AR-A0TX-01 15 45003751 45003751 C T B2M Missense_Mutation p.R3C 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-AR-A0TX-01 15 49935542 49935542 G C DTWD1 Missense_Mutation p.E228Q 0.22 deleterious(0.03) probably_damaging(0.934) TCGA-AR-A0TX-01 15 65157503 65157503 G A PLEKHO2 Missense_Mutation p.E297K 0.26 tolerated(0.12) benign(0.006) TCGA-AR-A0TX-01 15 73562365 73562365 G A NEO1 Missense_Mutation p.D837N 0.12 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 15 91352454 91352454 C T BLM Missense_Mutation p.S1280L 0.22 tolerated(0.14) benign(0.063) TCGA-AR-A0TX-01 16 10567815 10567815 G C ATF7IP2 Missense_Mutation p.L506F 0.09 deleterious(0.02) benign(0.164) TCGA-AR-A0TX-01 16 12155475 12155475 C T SNX29 Silent p.V405V 0.15 TCGA-AR-A0TX-01 16 18800310 18800310 C T RPS15A Missense_Mutation p.M42I 0.09 deleterious(0.03) benign(0.033) TCGA-AR-A0TX-01 16 1988909 1988909 G A MSRB1 3'UTR 0.17 TCGA-AR-A0TX-01 16 21223006 21223006 G C ZP2 5'UTR 0.12 TCGA-AR-A0TX-01 16 22337444 22337444 C T POLR3E Nonsense_Mutation p.Q571* 0.19 TCGA-AR-A0TX-01 16 22358885 22358885 C T CDR2 Missense_Mutation p.E256K 0.15 deleterious(0) probably_damaging(0.983) TCGA-AR-A0TX-01 16 2260649 2260649 C T BRICD5 Silent p.V18V 0.10 TCGA-AR-A0TX-01 16 23200836 23200836 C T SCNN1G Silent p.F154F 0.21 TCGA-AR-A0TX-01 16 28931193 28931193 C G RABEP2 Missense_Mutation p.E116Q 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-AR-A0TX-01 16 29845320 29845320 G C MVP Missense_Mutation p.Q170H 0.16 tolerated(0.29) possibly_damaging(0.671) TCGA-AR-A0TX-01 16 30106092 30106092 C T YPEL3 Intron 0.15 TCGA-AR-A0TX-01 16 31724658 31724658 C T ZNF720 5'UTR 0.29 TCGA-AR-A0TX-01 16 3486428 3486428 G A ZNF597 Missense_Mutation p.T424M 0.12 deleterious_low_confidence(0.05) benign(0.227) TCGA-AR-A0TX-01 16 56368657 56368657 G A GNAO1 Missense_Mutation p.D161N 0.22 deleterious(0.01) possibly_damaging(0.683) TCGA-AR-A0TX-01 16 70884449 70884449 C T HYDIN Missense_Mutation p.E4185K 0.12 possibly_damaging(0.81) TCGA-AR-A0TX-01 16 71894091 71894091 C G ZNF821 Missense_Mutation p.E357Q 0.18 tolerated(0.07) probably_damaging(0.982) TCGA-AR-A0TX-01 16 71895828 71895828 C T ZNF821 Silent p.V145V 0.16 TCGA-AR-A0TX-01 16 75498540 75498540 G T TMEM170A 5'UTR 0.21 TCGA-AR-A0TX-01 16 848076 848076 C G GNG13 3'UTR 0.14 TCGA-AR-A0TX-01 16 90001832 90001832 G C TUBB3 Missense_Mutation p.E325Q 0.14 deleterious_low_confidence(0.01) benign(0.225) TCGA-AR-A0TX-01 17 10404042 10404042 G C MYH1 Missense_Mutation p.L1256V 0.16 tolerated(0.07) benign(0.075) TCGA-AR-A0TX-01 17 30228721 30228721 C T UTP6 5'UTR 0.07 TCGA-AR-A0TX-01 17 31087356 31087356 C T MYO1D Silent p.L416L 0.04 TCGA-AR-A0TX-01 17 33690742 33690742 C G SLFN11 Missense_Mutation p.E29Q 0.23 tolerated(0.27) benign(0.03) TCGA-AR-A0TX-01 17 33806511 33806511 G C SLFN12L Missense_Mutation p.L240V 0.06 deleterious(0) probably_damaging(0.95) TCGA-AR-A0TX-01 17 34067512 34067512 G A RASL10B Missense_Mutation p.E101K 0.15 deleterious(0.02) probably_damaging(0.989) TCGA-AR-A0TX-01 17 34077323 34077323 C T GAS2L2 Missense_Mutation p.E134K 0.05 deleterious(0.04) benign(0.282) TCGA-AR-A0TX-01 17 34185965 34185965 C G C17orf66 Missense_Mutation p.R289T 0.09 tolerated(0.16) possibly_damaging(0.848) TCGA-AR-A0TX-01 17 36352487 36352487 C G RP11-1407O15.2 Missense_Mutation p.D434H 0.02 TCGA-AR-A0TX-01 17 37900388 37900388 G A GRB7 Silent p.R266R 0.03 TCGA-AR-A0TX-01 17 37948937 37948937 C T IKZF3 Missense_Mutation p.R138Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 17 38130628 38130628 C G GSDMA Missense_Mutation p.S285C 0.04 deleterious(0.01) benign(0.076) TCGA-AR-A0TX-01 17 38412760 38412760 C T WIPF2 Missense_Mutation p.P17S 0.06 deleterious_low_confidence(0.03) unknown(0) TCGA-AR-A0TX-01 17 39334385 39334385 G C KRTAP4-2 Missense_Mutation p.S11C 0.14 tolerated(0.18) unknown(0) TCGA-AR-A0TX-01 17 39887784 39887784 C T HAP1 Missense_Mutation p.E344K 0.24 tolerated(0.25) possibly_damaging(0.486) TCGA-AR-A0TX-01 17 61685465 61685465 C T TACO1 3'UTR 0.26 TCGA-AR-A0TX-01 17 61838664 61838664 G A CCDC47 Nonsense_Mutation p.Q199* 0.19 TCGA-AR-A0TX-01 17 61895420 61895420 C T DDX42 Missense_Mutation p.R827W 0.24 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-AR-A0TX-01 17 70120527 70120527 G C SOX9 Nonstop_Mutation p.*510Sext*49 0.31 TCGA-AR-A0TX-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.21 deleterious(0) probably_damaging(0.99) TCGA-AR-A0TX-01 17 76071354 76071354 G C TNRC6C Missense_Mutation p.D1016H 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 17 7754985 7754985 G A KDM6B Missense_Mutation p.E1346K 0.15 probably_damaging(0.99) TCGA-AR-A0TX-01 17 78111973 78111973 G C EIF4A3 Missense_Mutation p.Q279E 0.07 deleterious(0) benign(0.179) TCGA-AR-A0TX-01 17 79986381 79986381 G A LRRC45 Missense_Mutation p.E412K 0.24 deleterious(0.01) possibly_damaging(0.621) TCGA-AR-A0TX-01 17 80007814 80007814 G C RFNG Silent p.L214L 0.14 TCGA-AR-A0TX-01 18 10770164 10770164 G C PIEZO2 Missense_Mutation p.I951M 0.32 deleterious(0) possibly_damaging(0.894) TCGA-AR-A0TX-01 18 14538183 14538183 C T POTEC Missense_Mutation p.R196Q 0.18 tolerated(0.29) benign(0.003) TCGA-AR-A0TX-01 18 21474989 21474989 G A LAMA3 Missense_Mutation p.M1860I 0.09 benign(0.02) TCGA-AR-A0TX-01 18 2700630 2700630 G A SMCHD1 Missense_Mutation p.R479Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-AR-A0TX-01 18 33289733 33289733 G C GALNT1 Nonstop_Mutation p.*560Sext*51 0.18 TCGA-AR-A0TX-01 18 47799318 47799318 T - MBD1 Frame_Shift_Del p.D531Afs*7 0.14 TCGA-AR-A0TX-01 18 54424178 54424178 C G WDR7 Nonsense_Mutation p.S785* 0.11 TCGA-AR-A0TX-01 18 67068499 67068499 G A DOK6 Missense_Mutation p.D7N 0.13 deleterious(0) possibly_damaging(0.557) TCGA-AR-A0TX-01 18 74611135 74611135 C T ZNF236 Silent p.V615V 0.23 TCGA-AR-A0TX-01 19 10108093 10108093 G C COL5A3 Nonsense_Mutation p.S406* 0.21 TCGA-AR-A0TX-01 19 11283661 11283661 C G KANK2 Missense_Mutation p.S744T 0.22 deleterious(0.01) possibly_damaging(0.48) TCGA-AR-A0TX-01 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.23 TCGA-AR-A0TX-01 19 14080963 14080963 C G RFX1 Missense_Mutation p.E447Q 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A0TX-01 19 17444235 17444235 C G ANO8 Missense_Mutation p.E116Q 0.20 tolerated(0.13) possibly_damaging(0.453) TCGA-AR-A0TX-01 19 2877800 2877800 G A ZNF556 Missense_Mutation p.A282T 0.12 tolerated(1) benign(0.001) TCGA-AR-A0TX-01 19 2987056 2987056 G C TLE6 Missense_Mutation p.E121Q 0.20 tolerated(0.11) possibly_damaging(0.859) TCGA-AR-A0TX-01 19 35500993 35500993 C T GRAMD1A Intron 0.24 TCGA-AR-A0TX-01 19 35990898 35990898 C A DMKN Missense_Mutation p.A441S 0.15 tolerated(0.1) unknown(0) TCGA-AR-A0TX-01 19 36336322 36336322 G A NPHS1 Silent p.H626H 0.16 TCGA-AR-A0TX-01 19 37676240 37676240 C G ZNF585B Missense_Mutation p.L733F 0.19 tolerated(0.06) probably_damaging(0.98) TCGA-AR-A0TX-01 19 39876572 39876572 G A PAF1 3'UTR 0.25 TCGA-AR-A0TX-01 19 40834429 40834429 C T C19orf47 Silent p.L147L 0.17 TCGA-AR-A0TX-01 19 42818951 42818951 C T TMEM145 Missense_Mutation p.S123L 0.18 deleterious(0.04) benign(0.021) TCGA-AR-A0TX-01 19 45572374 45572374 G A CLASRP Missense_Mutation p.E607K 0.21 deleterious(0.01) unknown(0) TCGA-AR-A0TX-01 19 45899449 45899449 C G PPP1R13L Missense_Mutation p.D294H 0.14 deleterious(0) probably_damaging(0.962) TCGA-AR-A0TX-01 19 45899461 45899461 C T PPP1R13L Missense_Mutation p.E290K 0.19 deleterious(0) possibly_damaging(0.784) TCGA-AR-A0TX-01 19 49132338 49132338 C T SPHK2 Missense_Mutation p.L425F 0.19 deleterious(0.03) probably_damaging(0.943) TCGA-AR-A0TX-01 19 49965915 49965915 G A ALDH16A1 Missense_Mutation p.R334Q 0.13 tolerated(0.18) benign(0.023) TCGA-AR-A0TX-01 19 51630516 51630516 C T SIGLEC9 Silent p.L326L 0.24 TCGA-AR-A0TX-01 19 55948979 55948979 C T SHISA7 Silent p.K323K 0.26 TCGA-AR-A0TX-01 19 58232983 58232983 G C ZNF671 Silent p.L157L 0.31 TCGA-AR-A0TX-01 19 6427163 6427163 C G SLC25A41 Missense_Mutation p.Q297H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A0TX-01 19 694935 694935 C G PRSS57 Missense_Mutation p.E39Q 0.37 tolerated(0.05) possibly_damaging(0.782) TCGA-AR-A0TX-01 19 7585539 7585539 C G ZNF358 Missense_Mutation p.L471V 0.24 deleterious_low_confidence(0.05) benign(0.036) TCGA-AR-A0TX-01 19 7677124 7677124 G C CAMSAP3 Missense_Mutation p.G609A 0.29 tolerated(0.11) benign(0.269) TCGA-AR-A0TX-01 19 8399284 8399284 C T KANK3 Missense_Mutation p.M449I 0.18 deleterious(0) probably_damaging(0.946) TCGA-AR-A0TX-01 19 9066267 9066267 G C MUC16 Nonsense_Mutation p.S7060* 0.18 TCGA-AR-A0TX-01 1 10720544 10720544 G A CASZ1 Silent p.F185F 0.20 TCGA-AR-A0TX-01 1 109466650 109466650 C A GPSM2 Missense_Mutation p.N543K 0.21 tolerated(0.49) benign(0.021) TCGA-AR-A0TX-01 1 114380586 114380586 G C PTPN22 Missense_Mutation p.S479C 0.27 tolerated(0.11) benign(0.099) TCGA-AR-A0TX-01 1 114380881 114380881 G C PTPN22 Missense_Mutation p.L381V 0.30 deleterious(0.02) possibly_damaging(0.657) TCGA-AR-A0TX-01 1 11584097 11584097 G A PTCHD2 Missense_Mutation p.E821K 0.19 tolerated_low_confidence(0.37) possibly_damaging(0.601) TCGA-AR-A0TX-01 1 154030634 154030634 G A NUP210L Missense_Mutation p.P1013L 0.18 deleterious(0) probably_damaging(0.964) TCGA-AR-A0TX-01 1 155721824 155721824 C A GON4L Missense_Mutation p.A2133S 0.26 tolerated(0.09) possibly_damaging(0.567) TCGA-AR-A0TX-01 1 16074093 16074093 C T TMEM82 Missense_Mutation p.S333L 0.22 deleterious(0.05) unknown(0) TCGA-AR-A0TX-01 1 16260482 16260482 G T SPEN Nonsense_Mutation p.E2583* 0.18 TCGA-AR-A0TX-01 1 162769553 162769553 C G HSD17B7 Silent p.L156L 0.17 TCGA-AR-A0TX-01 1 16892212 16892212 C G NBPF1 Missense_Mutation p.E994Q 0.10 tolerated(0.05) probably_damaging(0.945) TCGA-AR-A0TX-01 1 183559438 183559438 G C NCF2 Silent p.L9L 0.16 TCGA-AR-A0TX-01 1 183933032 183933032 C T COLGALT2 Intron 0.16 TCGA-AR-A0TX-01 1 19464532 19464532 C T UBR4 Missense_Mutation p.E2959K 0.20 possibly_damaging(0.615) TCGA-AR-A0TX-01 1 201984496 201984496 C T ELF3 3'UTR 0.18 TCGA-AR-A0TX-01 1 203134926 203134926 G A ADORA1 Silent p.Q293Q 0.19 TCGA-AR-A0TX-01 1 205273335 205273335 G T NUAK2 Missense_Mutation p.S377Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 1 223968515 223968515 G A TP53BP2 3'UTR 0.16 TCGA-AR-A0TX-01 1 228467538 228467538 C T OBSCN Silent p.L2900L 0.17 TCGA-AR-A0TX-01 1 248637143 248637143 C T OR2T3 Silent p.L164L 0.06 TCGA-AR-A0TX-01 1 248737567 248737567 G A OR2T34 Silent p.L164L 0.18 TCGA-AR-A0TX-01 1 35835996 35835996 C G ZMYM4 Missense_Mutation p.Q317E 0.30 tolerated(1) benign(0.003) TCGA-AR-A0TX-01 1 42654583 42654583 C G FOXJ3 Missense_Mutation p.M490I 0.21 deleterious(0.01) possibly_damaging(0.885) TCGA-AR-A0TX-01 1 47581263 47581263 C T CYP4Z1 Nonsense_Mutation p.Q422* 0.16 TCGA-AR-A0TX-01 1 64624667 64624667 C G ROR1 Nonsense_Mutation p.S393* 0.22 TCGA-AR-A0TX-01 1 66085699 66085699 C T LEPR Silent p.F828F 0.10 TCGA-AR-A0TX-01 1 70291445 70291445 C G LRRC7 Missense_Mutation p.P108A 0.19 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 1 93170218 93170218 G A EVI5 Missense_Mutation p.S122L 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-AR-A0TX-01 1 9809658 9809658 G A CLSTN1 Silent p.A282A 0.18 TCGA-AR-A0TX-01 20 1460486 1460486 C T SIRPB2 Missense_Mutation p.E104K 0.14 tolerated(0.25) benign(0.231) TCGA-AR-A0TX-01 20 21695501 21695501 C G PAX1 3'UTR 0.25 TCGA-AR-A0TX-01 20 33876299 33876299 G A FAM83C Silent p.L257L 0.20 TCGA-AR-A0TX-01 20 35242200 35242200 G A SLA2 3'UTR 0.14 TCGA-AR-A0TX-01 20 4229170 4229170 C T ADRA1D Silent p.L145L 0.16 TCGA-AR-A0TX-01 20 44162961 44162961 G C WFDC6 3'UTR 0.07 TCGA-AR-A0TX-01 20 44163071 44163071 G A WFDC6 3'UTR 0.16 TCGA-AR-A0TX-01 20 44472970 44472970 G A ACOT8 Missense_Mutation p.S193F 0.13 deleterious(0.03) benign(0.094) TCGA-AR-A0TX-01 20 44473023 44473023 G A ACOT8 Silent p.L175L 0.11 TCGA-AR-A0TX-01 20 44669469 44669469 G C SLC12A5 Intron 0.08 TCGA-AR-A0TX-01 20 48252971 48252971 C G B4GALT5 Missense_Mutation p.E349Q 0.05 tolerated(0.11) probably_damaging(0.985) TCGA-AR-A0TX-01 20 57251343 57251343 G A STX16 Missense_Mutation p.R325Q 0.05 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AR-A0TX-01 20 58441426 58441426 G C SYCP2 Missense_Mutation p.F1414L 0.10 deleterious(0) probably_damaging(0.994) TCGA-AR-A0TX-01 20 5904085 5904085 C T CHGB Missense_Mutation p.S432F 0.16 tolerated(0.6) benign(0.308) TCGA-AR-A0TX-01 20 62854671 62854671 G C MYT1 Missense_Mutation p.K829N 0.19 possibly_damaging(0.881) TCGA-AR-A0TX-01 21 28212328 28212328 C G ADAMTS1 Missense_Mutation p.R573T 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 22 16287848 16287848 G A POTEH Missense_Mutation p.S13F 0.06 deleterious_low_confidence(0.02) benign(0.003) TCGA-AR-A0TX-01 22 37602828 37602828 C T SSTR3 Missense_Mutation p.E339K 0.22 tolerated(0.1) benign(0.345) TCGA-AR-A0TX-01 22 50356707 50356707 G A PIM3 Missense_Mutation p.D305N 0.19 tolerated_low_confidence(0.18) benign(0.008) TCGA-AR-A0TX-01 22 50596667 50596667 G A MOV10L1 Intron 0.16 TCGA-AR-A0TX-01 22 50658734 50658734 G C TUBGCP6 Missense_Mutation p.P1352A 0.11 tolerated(0.15) benign(0.171) TCGA-AR-A0TX-01 2 109109048 109109048 G C GCC2 Missense_Mutation p.E1417Q 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-AR-A0TX-01 2 109380099 109380099 C G RANBP2 Nonsense_Mutation p.S1035* 0.21 TCGA-AR-A0TX-01 2 113089934 113089934 G A ZC3H6 Missense_Mutation p.D1147N 0.22 deleterious(0) possibly_damaging(0.848) TCGA-AR-A0TX-01 2 11332346 11332346 C G ROCK2 Missense_Mutation p.R1364T 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-AR-A0TX-01 2 120848015 120848015 C G EPB41L5 Missense_Mutation p.F322L 0.18 deleterious(0) probably_damaging(1) TCGA-AR-A0TX-01 2 143746426 143746426 C G KYNU Intron 0.17 TCGA-AR-A0TX-01 2 149835493 149835493 G C KIF5C Missense_Mutation p.D451H 0.18 deleterious(0) probably_damaging(0.928) TCGA-AR-A0TX-01 2 15449336 15449336 C T NBAS Missense_Mutation p.D1540N 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A0TX-01 2 160231237 160231237 C T BAZ2B Missense_Mutation p.E1345K 0.17 probably_damaging(0.93) TCGA-AR-A0TX-01 2 163241275 163241275 G A KCNH7 Missense_Mutation p.A962V 0.13 tolerated(0.46) benign(0.001) TCGA-AR-A0TX-01 2 169826001 169826001 C A ABCB11 Missense_Mutation p.D624Y 0.26 deleterious(0) probably_damaging(0.98) TCGA-AR-A0TX-01 2 170097843 170097843 C T LRP2 Missense_Mutation p.E1234K 0.15 probably_damaging(1) TCGA-AR-A0TX-01 2 171355142 171355142 G C MYO3B Missense_Mutation p.A1019P 0.19 tolerated(0.43) benign(0.008) TCGA-AR-A0TX-01 2 171709249 171709249 C T GAD1 Missense_Mutation p.H404Y 0.15 deleterious(0) probably_damaging(0.98) TCGA-AR-A0TX-01 2 172641669 172641669 G C SLC25A12 3'UTR 0.24 TCGA-AR-A0TX-01 2 175618071 175618071 C G CHRNA1 Intron 0.22 TCGA-AR-A0TX-01 2 179429698 179429698 C G TTN Missense_Mutation p.G27054A 0.18 TCGA-AR-A0TX-01 2 179456070 179456070 C T TTN Missense_Mutation p.E20128K 0.12 TCGA-AR-A0TX-01 2 179650716 179650716 G A TTN Silent p.A743A 0.24 TCGA-AR-A0TX-01 2 180851479 180851479 C G CWC22 Missense_Mutation p.R50T 0.18 deleterious(0) benign(0.384) TCGA-AR-A0TX-01 2 186678494 186678494 G A FSIP2 Missense_Mutation p.E6773K 0.10 benign(0.008) TCGA-AR-A0TX-01 2 196749517 196749517 G A DNAH7 Missense_Mutation p.S1852L 0.18 deleterious(0.01) possibly_damaging(0.721) TCGA-AR-A0TX-01 2 197010664 197010664 G A STK17B Nonsense_Mutation p.Q151* 0.13 TCGA-AR-A0TX-01 2 197105211 197105211 C G HECW2 Missense_Mutation p.Q1242H 0.16 deleterious(0.04) possibly_damaging(0.453) TCGA-AR-A0TX-01 2 202342409 202342409 C T STRADB Silent p.L206L 0.14 TCGA-AR-A0TX-01 2 218954588 218954588 G C RUFY4 3'UTR 0.23 TCGA-AR-A0TX-01 2 223464670 223464670 C T FARSB Missense_Mutation p.G532E 0.22 deleterious(0.01) possibly_damaging(0.802) TCGA-AR-A0TX-01 2 24398333 24398333 C G FAM228A Intron 0.24 TCGA-AR-A0TX-01 2 32474920 32474920 C G NLRC4 Missense_Mutation p.K671N 0.26 deleterious(0.01) possibly_damaging(0.663) TCGA-AR-A0TX-01 2 32770872 32770872 C T BIRC6 Missense_Mutation p.S4252F 0.14 probably_damaging(0.993) TCGA-AR-A0TX-01 2 3605784 3605784 G C RNASEH1 Missense_Mutation p.R23G 0.16 tolerated_low_confidence(0.49) benign(0.002) TCGA-AR-A0TX-01 2 39184142 39184142 C T ARHGEF33 Nonsense_Mutation p.Q442* 0.12 TCGA-AR-A0TX-01 2 39187229 39187229 C T ARHGEF33 Silent p.L595L 0.22 TCGA-AR-A0TX-01 2 39214691 39214691 C T SOS1 Missense_Mutation p.D1145N 0.11 deleterious(0.03) benign(0.101) TCGA-AR-A0TX-01 2 40655984 40655984 G C SLC8A1 Missense_Mutation p.I479M 0.20 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 2 44065696 44065696 G C ABCG5 Silent p.L41L 0.20 TCGA-AR-A0TX-01 2 44540987 44540987 C G SLC3A1 Nonsense_Mutation p.S505* 0.15 TCGA-AR-A0TX-01 2 44541065 44541065 C G SLC3A1 Nonsense_Mutation p.S531* 0.12 TCGA-AR-A0TX-01 2 47382488 47382488 G A C2orf61 5'UTR 0.08 TCGA-AR-A0TX-01 2 55530210 55530210 G A CCDC88A Missense_Mutation p.S1488F 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 2 55791554 55791554 C T SMEK2 Missense_Mutation p.E719K 0.13 tolerated(0.16) benign(0.437) TCGA-AR-A0TX-01 2 61468708 61468708 G A USP34 Missense_Mutation p.S2255L 0.30 tolerated(0.09) benign(0.065) TCGA-AR-A0TX-01 2 67637053 67637053 G C ETAA1 Missense_Mutation p.E888D 0.15 deleterious(0.04) probably_damaging(0.948) TCGA-AR-A0TX-01 2 69034499 69034499 C T ARHGAP25 Silent p.F187F 0.20 TCGA-AR-A0TX-01 2 71591252 71591252 C T ZNF638 Silent p.F529F 0.32 TCGA-AR-A0TX-01 2 73455508 73455508 C T PRADC1 3'UTR 0.15 TCGA-AR-A0TX-01 2 74688908 74688908 G C MOGS Missense_Mutation p.Q670E 0.15 tolerated(1) benign(0.008) TCGA-AR-A0TX-01 2 74699718 74699718 C G MRPL53 Missense_Mutation p.E24Q 0.15 deleterious(0.03) probably_damaging(0.921) TCGA-AR-A0TX-01 2 87069372 87069372 C T CD8B Intron 0.21 TCGA-AR-A0TX-01 2 88474160 88474160 C T THNSL2 Silent p.L76L 0.23 TCGA-AR-A0TX-01 2 88474177 88474177 C G THNSL2 Missense_Mutation p.F81L 0.19 tolerated(0.21) benign(0.302) TCGA-AR-A0TX-01 3 105271008 105271008 G A ALCAM Missense_Mutation p.E510K 0.12 tolerated(0.29) benign(0.424) TCGA-AR-A0TX-01 3 121415752 121415752 G A GOLGB1 Silent p.L1206L 0.15 TCGA-AR-A0TX-01 3 121975980 121975980 G A CASR Missense_Mutation p.E80K 0.21 deleterious(0.02) probably_damaging(1) TCGA-AR-A0TX-01 3 122247483 122247483 C T PARP9 Missense_Mutation p.E765K 0.18 deleterious(0) probably_damaging(0.945) TCGA-AR-A0TX-01 3 145912123 145912123 G A PLSCR4 3'UTR 0.21 TCGA-AR-A0TX-01 3 160155837 160155837 G A TRIM59 Silent p.L379L 0.23 TCGA-AR-A0TX-01 3 169847254 169847254 G A PHC3 Nonsense_Mutation p.Q336* 0.17 TCGA-AR-A0TX-01 3 171442510 171442510 C T PLD1 Missense_Mutation p.R245K 0.10 tolerated(0.52) possibly_damaging(0.588) TCGA-AR-A0TX-01 3 173999154 173999154 C T NLGN1 3'UTR 0.26 TCGA-AR-A0TX-01 3 193151690 193151690 G C ATP13A4 Nonsense_Mutation p.S929* 0.19 TCGA-AR-A0TX-01 3 194081543 194081543 G A LRRC15 Missense_Mutation p.S83L 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-AR-A0TX-01 3 194158079 194158079 C T ATP13A3 Missense_Mutation p.A654T 0.19 deleterious(0) probably_damaging(0.948) TCGA-AR-A0TX-01 3 195511634 195511634 G C MUC4 Missense_Mutation p.L2273V 0.11 unknown(0) TCGA-AR-A0TX-01 3 196230093 196230093 G C RNF168 5'UTR 0.33 TCGA-AR-A0TX-01 3 197023229 197023229 G A DLG1 Nonsense_Mutation p.Q47* 0.20 TCGA-AR-A0TX-01 3 3888343 3888343 C G LRRN1 Missense_Mutation p.S673C 0.26 deleterious(0.02) possibly_damaging(0.894) TCGA-AR-A0TX-01 3 405079 405079 C A CHL1 Intron 0.15 TCGA-AR-A0TX-01 3 45127171 45127171 G T CDCP1 Missense_Mutation p.P824T 0.26 deleterious(0.01) probably_damaging(1) TCGA-AR-A0TX-01 3 46399034 46399034 C T CCR2 Missense_Mutation p.R6C 0.22 tolerated_low_confidence(0.1) benign(0.004) TCGA-AR-A0TX-01 3 47165587 47165587 G C SETD2 Nonsense_Mutation p.S180* 0.16 TCGA-AR-A0TX-01 3 49160162 49160162 G A LAMB2 Silent p.I1516I 0.13 TCGA-AR-A0TX-01 3 49348063 49348063 G C USP4 Missense_Mutation p.S315C 0.21 deleterious(0) probably_damaging(1) TCGA-AR-A0TX-01 3 49756806 49756806 G C AMIGO3 Silent p.L31L 0.17 TCGA-AR-A0TX-01 3 52668737 52668737 C G PBRM1 Missense_Mutation p.R394S 0.19 deleterious(0) possibly_damaging(0.634) TCGA-AR-A0TX-01 4 104081791 104081791 C T CENPE Silent p.L759L 0.12 TCGA-AR-A0TX-01 4 105412003 105412003 G A CXXC4 Silent p.N319N 0.24 TCGA-AR-A0TX-01 4 106196474 106196474 C T TET2 Nonsense_Mutation p.Q1603* 0.19 TCGA-AR-A0TX-01 4 113540297 113540297 C G C4orf21 Missense_Mutation p.E301Q 0.17 tolerated(0.06) benign(0.017) TCGA-AR-A0TX-01 4 120190905 120190905 C G USP53 Missense_Mutation p.L450V 0.20 tolerated(0.21) benign(0.01) TCGA-AR-A0TX-01 4 144119005 144119005 G A USP38 Silent p.V326V 0.18 TCGA-AR-A0TX-01 4 152499108 152499108 C T FAM160A1 Silent p.F204F 0.12 TCGA-AR-A0TX-01 4 160264511 160264511 G A RAPGEF2 Missense_Mutation p.R909Q 0.16 deleterious(0.01) possibly_damaging(0.457) TCGA-AR-A0TX-01 4 162680647 162680647 C G FSTL5 Missense_Mutation p.D215H 0.12 deleterious(0.05) possibly_damaging(0.887) TCGA-AR-A0TX-01 4 177017619 177017619 G A WDR17 5'UTR 0.21 TCGA-AR-A0TX-01 4 40124825 40124825 C T N4BP2 Missense_Mutation p.S1426F 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 4 47538793 47538793 G A ATP10D Missense_Mutation p.E412K 0.14 tolerated(0.07) possibly_damaging(0.53) TCGA-AR-A0TX-01 4 66201769 66201769 C T EPHA5 Missense_Mutation p.M911I 0.12 deleterious(0) possibly_damaging(0.851) TCGA-AR-A0TX-01 4 68539460 68539460 C G UBA6 Missense_Mutation p.Q167H 0.17 deleterious(0) benign(0.089) TCGA-AR-A0TX-01 4 76811237 76811237 G C PPEF2 Missense_Mutation p.S97C 0.14 deleterious(0.01) possibly_damaging(0.726) TCGA-AR-A0TX-01 4 79328836 79328836 G A FRAS1 Silent p.V1383V 0.15 TCGA-AR-A0TX-01 4 85674919 85674919 C T WDFY3 Missense_Mutation p.M1890I 0.17 tolerated(0.25) benign(0.002) TCGA-AR-A0TX-01 5 121785558 121785558 C G SNCAIP Silent p.V537V 0.23 TCGA-AR-A0TX-01 5 137802624 137802624 G C EGR1 Silent p.V162V 0.15 TCGA-AR-A0TX-01 5 140235680 140235680 C G PCDHA10 Missense_Mutation p.S16W 0.16 tolerated_low_confidence(0.1) benign(0.007) TCGA-AR-A0TX-01 5 140432874 140432874 C G PCDHB1 Missense_Mutation p.L607V 0.17 deleterious(0) possibly_damaging(0.863) TCGA-AR-A0TX-01 5 140616546 140616546 C G PCDHB18 RNA 0.24 TCGA-AR-A0TX-01 5 149576681 149576681 C G SLC6A7 Missense_Mutation p.F142L 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-AR-A0TX-01 5 150135984 150135984 C G DCTN4 Missense_Mutation p.K67N 0.13 deleterious(0) possibly_damaging(0.474) TCGA-AR-A0TX-01 5 151231107 151231107 C G GLRA1 Silent p.L252L 0.18 TCGA-AR-A0TX-01 5 176519704 176519704 G A FGFR4 Missense_Mutation p.E326K 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-AR-A0TX-01 5 176730986 176730986 G A PRELID1 5'UTR 0.21 TCGA-AR-A0TX-01 5 176799049 176799049 G C RGS14 Missense_Mutation p.L558F 0.12 tolerated_low_confidence(0.73) benign(0.165) TCGA-AR-A0TX-01 5 177059383 177059383 G A RP11-1277A3.2 Intron 0.22 TCGA-AR-A0TX-01 5 32091263 32091263 G A PDZD2 Missense_Mutation p.R2570K 0.13 tolerated(0.16) benign(0.048) TCGA-AR-A0TX-01 5 68505668 68505668 C G CENPH 3'UTR 0.14 TCGA-AR-A0TX-01 5 82554427 82554427 G A XRCC4 Missense_Mutation p.R275Q 0.26 deleterious(0.02) benign(0.042) TCGA-AR-A0TX-01 5 82817735 82817735 C G VCAN Missense_Mutation p.P1204A 0.17 tolerated(0.05) possibly_damaging(0.798) TCGA-AR-A0TX-01 5 837564 837564 G C ZDHHC11 Silent p.L272L 0.15 TCGA-AR-A0TX-01 6 110434565 110434565 C G WASF1 Missense_Mutation p.V78L 0.21 deleterious(0) unknown(0) TCGA-AR-A0TX-01 6 116758321 116758321 C T DSE Missense_Mutation p.S897F 0.23 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-AR-A0TX-01 6 134212887 134212887 G A TCF21 Missense_Mutation p.D163N 0.18 deleterious(0.03) benign(0.035) TCGA-AR-A0TX-01 6 144780060 144780060 C T UTRN Silent p.V813V 0.11 TCGA-AR-A0TX-01 6 151247385 151247385 G C MTHFD1L Missense_Mutation p.E404Q 0.14 tolerated(0.1) benign(0.142) TCGA-AR-A0TX-01 6 151907144 151907144 C T CCDC170 Nonsense_Mutation p.Q405* 0.16 TCGA-AR-A0TX-01 6 161507647 161507647 C A MAP3K4 Nonsense_Mutation p.S835* 0.16 TCGA-AR-A0TX-01 6 167570935 167570935 G C GPR31 Missense_Mutation p.Q129E 0.15 deleterious(0.01) benign(0.007) TCGA-AR-A0TX-01 6 17799620 17799620 G C KIF13A Silent p.V889V 0.16 TCGA-AR-A0TX-01 6 24416704 24416704 G C MRS2 Missense_Mutation p.E267Q 0.18 deleterious(0.05) benign(0.273) TCGA-AR-A0TX-01 6 26250619 26250619 A G HIST1H3F Missense_Mutation p.V72A 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-AR-A0TX-01 6 26273272 26273272 G A HIST1H2BI Silent p.Q23Q 0.12 TCGA-AR-A0TX-01 6 26463541 26463541 C G BTN2A1 Missense_Mutation p.S167C 0.22 deleterious(0) probably_damaging(1) TCGA-AR-A0TX-01 6 27879431 27879431 G C OR2B2 Missense_Mutation p.Q223E 0.28 deleterious(0.01) benign(0.309) TCGA-AR-A0TX-01 6 33365888 33365888 G T KIFC1 Missense_Mutation p.G32V 0.16 deleterious(0.01) possibly_damaging(0.526) TCGA-AR-A0TX-01 6 35858711 35858711 C G SRPK1 Missense_Mutation p.D52H 0.10 deleterious(0) probably_damaging(0.984) TCGA-AR-A0TX-01 6 42713653 42713653 C G TBCC Missense_Mutation p.E53D 0.17 tolerated(0.39) benign(0.073) TCGA-AR-A0TX-01 6 46620885 46620885 C G SLC25A27 5'UTR 0.40 TCGA-AR-A0TX-01 6 55381378 55381378 C T HMGCLL1 Missense_Mutation p.M137I 0.18 tolerated(0.09) benign(0.023) TCGA-AR-A0TX-01 6 57061379 57061379 G A RAB23 Silent p.F89F 0.22 TCGA-AR-A0TX-01 6 64422164 64422164 C T PHF3 Silent p.L1560L 0.11 TCGA-AR-A0TX-01 6 74135220 74135220 G C MB21D1 Missense_Mutation p.F433L 0.23 deleterious(0) possibly_damaging(0.75) TCGA-AR-A0TX-01 6 83896771 83896771 T G PGM3 Missense_Mutation p.Q166P 0.19 deleterious(0.04) possibly_damaging(0.799) TCGA-AR-A0TX-01 6 86176793 86176793 G C NT5E Missense_Mutation p.E119Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TX-01 6 86303455 86303455 G C SNX14 5'UTR 0.24 TCGA-AR-A0TX-01 6 90406153 90406153 C T MDN1 Silent p.E3103E 0.23 TCGA-AR-A0TX-01 7 100016703 100016703 G T ZCWPW1 Intron 0.12 TCGA-AR-A0TX-01 7 117188830 117188830 G C CFTR Missense_Mutation p.E449Q 0.22 tolerated(0.06) benign(0.001) TCGA-AR-A0TX-01 7 149575859 149575859 G A ATP6V0E2 Intron 0.33 TCGA-AR-A0TX-01 7 150417814 150417814 G A GIMAP1 Missense_Mutation p.R241Q 0.23 tolerated(0.18) benign(0.016) TCGA-AR-A0TX-01 7 151945354 151945354 C T KMT2C Missense_Mutation p.G722E 0.12 benign(0.001) TCGA-AR-A0TX-01 7 21658797 21658797 G A DNAH11 Missense_Mutation p.R1450Q 0.22 benign(0.013) TCGA-AR-A0TX-01 7 24874204 24874204 C A OSBPL3 Silent p.L549L 0.17 TCGA-AR-A0TX-01 7 34125658 34125658 G A BMPER Missense_Mutation p.E567K 0.16 tolerated(0.33) benign(0.02) TCGA-AR-A0TX-01 7 47840422 47840422 G A PKD1L1 Missense_Mutation p.S2673F 0.18 tolerated(0.71) benign(0.006) TCGA-AR-A0TX-01 7 53104112 53104112 G A POM121L12 Missense_Mutation p.D250N 0.21 tolerated(0.54) possibly_damaging(0.908) TCGA-AR-A0TX-01 7 77011930 77011930 G C GSAP Missense_Mutation p.L163V 0.24 tolerated(0.92) benign(0.318) TCGA-AR-A0TX-01 7 92763064 92763064 G A SAMD9L Missense_Mutation p.H741Y 0.13 deleterious(0) probably_damaging(1) TCGA-AR-A0TX-01 8 120602768 120602768 G A ENPP2 Missense_Mutation p.S447F 0.19 deleterious(0) benign(0.013) TCGA-AR-A0TX-01 8 124221925 124221925 C T FAM83A 3'UTR 0.21 TCGA-AR-A0TX-01 8 144696575 144696575 G C TSTA3 Silent p.T171T 0.15 TCGA-AR-A0TX-01 8 26236985 26236985 G C BNIP3L 5'Flank 0.26 TCGA-AR-A0TX-01 8 39495172 39495172 G T ADAM18 Missense_Mutation p.W259C 0.23 deleterious(0.01) benign(0.376) TCGA-AR-A0TX-01 8 41397224 41397224 G A GINS4 Missense_Mutation p.E109K 0.06 tolerated(0.16) benign(0.021) TCGA-AR-A0TX-01 8 56699010 56699010 G CAA TGS1 Frame_Shift_Ins p.E185Qfs*9 0.21 TCGA-AR-A0TX-01 8 66616961 66616961 A G MTFR1 Missense_Mutation p.D105G 0.23 tolerated(0.42) benign(0.013) TCGA-AR-A0TX-01 8 71068737 71068737 C T NCOA2 Silent p.V621V 0.23 TCGA-AR-A0TX-01 8 82359663 82359663 G C PMP2 5'UTR 0.10 TCGA-AR-A0TX-01 9 104302621 104302621 C T RNF20 Missense_Mutation p.S89L 0.09 tolerated(0.07) benign(0) TCGA-AR-A0TX-01 9 131262505 131262505 C A ODF2 Missense_Mutation p.P821T 0.18 deleterious(0) possibly_damaging(0.628) TCGA-AR-A0TX-01 9 131484019 131484019 C T ZDHHC12 Silent p.E131E 0.11 TCGA-AR-A0TX-01 9 18662042 18662042 G A ADAMTSL1 Silent p.Q352Q 0.19 TCGA-AR-A0TX-01 9 35059573 35059573 G A VCP Nonsense_Mutation p.Q641* 0.19 TCGA-AR-A0TX-01 9 35749932 35749932 G A GBA2 5'Flank 0.26 TCGA-AR-A0TX-01 9 36923468 36923468 G A PAX5 Missense_Mutation p.S265L 0.24 tolerated(0.1) benign(0.206) TCGA-AR-A0TX-01 9 4286347 4286347 G A GLIS3 Missense_Mutation p.H27Y 0.11 deleterious(0.02) benign(0.002) TCGA-AR-A0TX-01 9 5466805 5466805 G C CD274 Missense_Mutation p.D276H 0.13 deleterious(0.01) possibly_damaging(0.479) TCGA-AR-A0TX-01 9 74355044 74355044 T C TMEM2 Missense_Mutation p.Q380R 0.17 tolerated(0.68) benign(0.001) TCGA-AR-A0TX-01 9 8485307 8485307 G C PTPRD Missense_Mutation p.H1025D 0.17 tolerated(0.24) probably_damaging(0.971) TCGA-AR-A0TX-01 9 91090081 91090081 G A SPIN1 Silent p.S226S 0.13 TCGA-AR-A0TX-01 9 91616385 91616385 C G S1PR3 Missense_Mutation p.I90M 0.18 deleterious(0.01) possibly_damaging(0.806) TCGA-AR-A0TX-01 X 101858368 101858368 T C ARMCX5 Silent p.Y433Y 0.16 TCGA-AR-A0TX-01 X 102192645 102192645 G C RAB40AL Missense_Mutation p.K133N 0.25 tolerated(0.09) probably_damaging(0.997) TCGA-AR-A0TX-01 X 102338141 102338141 C G NXF3 Missense_Mutation p.E201Q 0.19 deleterious(0.04) possibly_damaging(0.515) TCGA-AR-A0TX-01 X 105193653 105193653 C T NRK Silent p.A1481A 0.20 TCGA-AR-A0TX-01 X 105879798 105879798 G C CXorf57 Missense_Mutation p.L443F 0.15 deleterious(0.01) possibly_damaging(0.896) TCGA-AR-A0TX-01 X 114384630 114384630 G A LRCH2 Silent p.V511V 0.15 TCGA-AR-A0TX-01 X 122460065 122460065 G T GRIA3 Splice_Site p.X232_splice 0.24 TCGA-AR-A0TX-01 X 125685470 125685470 G C DCAF12L1 Missense_Mutation p.F374L 0.30 deleterious(0.02) possibly_damaging(0.818) TCGA-AR-A0TX-01 X 139586809 139586809 C T SOX3 Silent p.V139V 0.12 TCGA-AR-A0TX-01 X 146295084 146295084 C T MIR513A1 RNA 0.15 TCGA-AR-A0TX-01 X 1571791 1571791 G A ASMTL 5'Flank 0.15 TCGA-AR-A0TX-01 X 19028892 19028892 G A GPR64 Silent p.I368I 0.13 TCGA-AR-A0TX-01 X 20174329 20174329 C T RPS6KA3 Silent p.Q666Q 0.20 TCGA-AR-A0TX-01 X 47070624 47070624 G A UBA1 Missense_Mutation p.D822N 0.28 deleterious(0.04) benign(0.016) TCGA-AR-A0TX-01 X 48681327 48681327 G C HDAC6 Missense_Mutation p.E840Q 0.19 deleterious(0.03) benign(0.194) TCGA-AR-A0TX-01 X 54785121 54785121 C T ITIH6 Silent p.L462L 0.23 TCGA-AR-A0TX-01 X 62885817 62885817 G T ARHGEF9 Missense_Mutation p.N335K 0.17 tolerated(0.09) benign(0.01) TCGA-AR-A0TX-01 X 70352039 70352039 G C MED12 Missense_Mutation p.K1412N 0.14 benign(0.343) TCGA-AR-A0TX-01 X 73962610 73962610 C G KIAA2022 Missense_Mutation p.Q594H 0.17 deleterious(0.01) possibly_damaging(0.532) TCGA-AR-A0TX-01 X 77294386 77294386 G A ATP7A Missense_Mutation p.M1188I 0.23 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TZ-01 10 294305 294305 T G ZMYND11 Missense_Mutation p.S419R 0.42 deleterious(0) probably_damaging(0.995) TCGA-AR-A0TZ-01 10 294311 294311 C A ZMYND11 Missense_Mutation p.S421R 0.40 deleterious(0) possibly_damaging(0.898) TCGA-AR-A0TZ-01 10 31815672 31815672 G A ZEB1 Missense_Mutation p.R953Q 0.32 deleterious(0) possibly_damaging(0.638) TCGA-AR-A0TZ-01 11 10777333 10777333 G A CTR9 Missense_Mutation p.A165T 0.39 deleterious(0.01) benign(0.331) TCGA-AR-A0TZ-01 11 30928204 30928204 C T DCDC1 Missense_Mutation p.M1329I 0.42 tolerated(0.2) benign(0.043) TCGA-AR-A0TZ-01 11 63277343 63277343 G C LGALS12 Missense_Mutation p.E179Q 0.39 tolerated(0.69) benign(0.004) TCGA-AR-A0TZ-01 11 64622955 64622955 G A EHD1 Missense_Mutation p.H307Y 0.29 deleterious(0) benign(0.266) TCGA-AR-A0TZ-01 11 68552302 68552302 C A CPT1A Missense_Mutation p.A382S 0.14 deleterious(0.05) possibly_damaging(0.874) TCGA-AR-A0TZ-01 11 70653104 70653104 G T SHANK2 Intron 0.17 TCGA-AR-A0TZ-01 11 70653135 70653135 G T SHANK2 Silent p.I546I 0.17 TCGA-AR-A0TZ-01 11 70653231 70653231 G A SHANK2 Silent p.F514F 0.16 TCGA-AR-A0TZ-01 11 70653240 70653240 G C SHANK2 Silent p.L511L 0.17 TCGA-AR-A0TZ-01 12 120156653 120156653 C T CIT Missense_Mutation p.R1285Q 0.36 tolerated(0.09) possibly_damaging(0.862) TCGA-AR-A0TZ-01 12 133780972 133780974 CTT - ZNF268 In_Frame_Del p.F901del 0.29 TCGA-AR-A0TZ-01 14 72125116 72125116 C G SIPA1L1 Missense_Mutation p.S687C 0.42 deleterious(0.01) probably_damaging(0.934) TCGA-AR-A0TZ-01 14 75200780 75200780 A G FCF1 Missense_Mutation p.H152R 0.42 deleterious(0) benign(0.219) TCGA-AR-A0TZ-01 14 81744003 81744003 T A STON2 Missense_Mutation p.D551V 0.44 tolerated(0.06) benign(0.003) TCGA-AR-A0TZ-01 15 25200202 25200202 C T SNURF Missense_Mutation p.R3W 0.39 tolerated_low_confidence(0.11) possibly_damaging(0.667) TCGA-AR-A0TZ-01 15 69328195 69328195 G A NOX5 Silent p.P369P 0.45 TCGA-AR-A0TZ-01 15 74489717 74489717 G C STRA6 Silent p.L115L 0.40 TCGA-AR-A0TZ-01 15 89002954 89002954 A - MRPL46 Frame_Shift_Del p.S244Pfs*21 0.32 TCGA-AR-A0TZ-01 16 30667601 30667601 C T PRR14 Missense_Mutation p.T576I 0.51 deleterious_low_confidence(0.02) benign(0.044) TCGA-AR-A0TZ-01 16 3533483 3533483 G A NAA60 Missense_Mutation p.R153K 0.41 tolerated(0.21) possibly_damaging(0.53) TCGA-AR-A0TZ-01 17 34893216 34893216 T G PIGW Missense_Mutation p.F89C 0.38 tolerated(0.14) benign(0.005) TCGA-AR-A0TZ-01 17 56329723 56329723 C T LPO Missense_Mutation p.R321C 0.50 deleterious(0) probably_damaging(0.991) TCGA-AR-A0TZ-01 17 73919517 73919517 G A FBF1 Missense_Mutation p.P377S 0.44 tolerated(0.29) benign(0.147) TCGA-AR-A0TZ-01 1 233121877 233121877 C T PCNXL2 Silent p.V2067V 0.52 TCGA-AR-A0TZ-01 1 238049138 238049138 G A ZP4 Silent p.I296I 0.38 TCGA-AR-A0TZ-01 1 53608037 53608037 C T SLC1A7 Missense_Mutation p.V29M 0.41 tolerated(0.09) possibly_damaging(0.689) TCGA-AR-A0TZ-01 1 70700442 70700442 G C SRSF11 Missense_Mutation p.G171R 0.46 deleterious(0) unknown(0) TCGA-AR-A0TZ-01 20 17208116 17208116 G T PCSK2 Nonsense_Mutation p.G56* 0.34 TCGA-AR-A0TZ-01 20 23807084 23807084 G A CST2 Nonsense_Mutation p.R72* 0.20 TCGA-AR-A0TZ-01 2 149227152 149227152 G T MBD5 Missense_Mutation p.G547V 0.50 deleterious(0.02) probably_damaging(0.979) TCGA-AR-A0TZ-01 2 166536142 166536142 C T CSRNP3 Missense_Mutation p.A546V 0.48 tolerated_low_confidence(0.06) benign(0.017) TCGA-AR-A0TZ-01 2 172563065 172563065 G A DYNC1I2 Missense_Mutation p.E79K 0.32 tolerated(0.82) benign(0.009) TCGA-AR-A0TZ-01 2 210858856 210858856 G A UNC80 Silent p.A3126A 0.49 TCGA-AR-A0TZ-01 2 9547212 9547212 C G ITGB1BP1 Intron 0.50 TCGA-AR-A0TZ-01 3 118937505 118937505 G C B4GALT4 Silent p.L263L 0.74 TCGA-AR-A0TZ-01 3 138218960 138218960 G C CEP70 Missense_Mutation p.D548E 0.74 deleterious(0) benign(0.018) TCGA-AR-A0TZ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A0TZ-01 3 44612650 44612650 G T ZKSCAN7 Missense_Mutation p.R683I 0.76 deleterious(0) probably_damaging(1) TCGA-AR-A0TZ-01 3 49698885 49698885 C T BSN Missense_Mutation p.R3203C 0.67 unknown(0) TCGA-AR-A0TZ-01 4 164247281 164247281 T C NPY1R Missense_Mutation p.I142M 0.44 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TZ-01 4 39474832 39474832 G T LIAS Splice_Site p.X356_splice 0.38 TCGA-AR-A0TZ-01 4 54218895 54218895 T A SCFD2 Missense_Mutation p.I293F 0.42 deleterious(0) benign(0.273) TCGA-AR-A0TZ-01 4 88537101 88537101 G A DSPP Missense_Mutation p.S1096N 0.56 unknown(0) TCGA-AR-A0TZ-01 4 88537227 88537227 G A DSPP Missense_Mutation p.S1138N 0.34 unknown(0) TCGA-AR-A0TZ-01 5 132269985 132269985 G A AFF4 Missense_Mutation p.R258W 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TZ-01 5 157244502 157244502 G A CLINT1 Missense_Mutation p.T32M 0.36 deleterious(0) probably_damaging(1) TCGA-AR-A0TZ-01 5 49695120 49695120 G C EMB Missense_Mutation p.S324C 0.38 deleterious(0) probably_damaging(0.91) TCGA-AR-A0TZ-01 6 131937087 131937087 G C MED23 Missense_Mutation p.S279C 0.67 deleterious(0) probably_damaging(0.995) TCGA-AR-A0TZ-01 6 27100982 27100982 C T HIST1H2AG Silent p.V44V 0.44 TCGA-AR-A0TZ-01 6 50803801 50803801 C T TFAP2B Missense_Mutation p.S210F 0.36 deleterious(0) possibly_damaging(0.496) TCGA-AR-A0TZ-01 7 103162496 103162496 C T RELN Silent p.A2547A 0.13 TCGA-AR-A0TZ-01 7 139311489 139311489 C T HIPK2 Missense_Mutation p.E493K 0.48 deleterious(0) probably_damaging(0.997) TCGA-AR-A0TZ-01 7 151845516 151845516 T C KMT2C Missense_Mutation p.K4499R 0.32 probably_damaging(0.999) TCGA-AR-A0TZ-01 7 81386610 81386610 C G HGF Missense_Mutation p.R126T 0.41 deleterious(0) probably_damaging(0.999) TCGA-AR-A0TZ-01 7 88965621 88965621 C T ZNF804B Missense_Mutation p.H1109Y 0.38 tolerated(0.53) benign(0.005) TCGA-AR-A0TZ-01 8 104343750 104343750 C A FZD6 3'UTR 0.38 TCGA-AR-A0TZ-01 8 133045292 133045292 C A OC90 Nonsense_Mutation p.E285* 0.39 TCGA-AR-A0TZ-01 8 141262906 141262906 G A TRAPPC9 Nonsense_Mutation p.Q899* 0.38 TCGA-AR-A0TZ-01 8 145512859 145512859 C T BOP1 Missense_Mutation p.E76K 0.05 tolerated(0.33) benign(0.305) TCGA-AR-A0TZ-01 8 23709754 23709754 C T STC1 Splice_Site p.X87_splice 0.38 TCGA-AR-A0TZ-01 8 57218238 57218238 C T SDR16C5 Missense_Mutation p.E252K 0.44 tolerated(0.98) benign(0.008) TCGA-AR-A0TZ-01 9 40773494 40773494 C A ZNF658 Missense_Mutation p.R594I 0.29 deleterious(0) probably_damaging(0.987) TCGA-AR-A0TZ-01 9 5988373 5988373 C G KIAA2026 Missense_Mutation p.E256Q 0.68 deleterious(0.01) possibly_damaging(0.791) TCGA-AR-A0TZ-01 X 119510247 119510247 C T ATP1B4 Missense_Mutation p.R258C 0.40 tolerated(0.14) possibly_damaging(0.697) TCGA-AR-A0TZ-01 X 149013838 149013838 G A MAGEA8 Silent p.A264A 0.41 TCGA-AR-A0TZ-01 X 153236135 153236135 C T HCFC1 Missense_Mutation p.E53K 0.19 deleterious(0.02) probably_damaging(0.988) TCGA-AR-A0U0-01 10 102049824 102049824 G C PKD2L1 Nonsense_Mutation p.S733* 0.32 TCGA-AR-A0U0-01 10 105792444 105792444 T G COL17A1 Missense_Mutation p.K1476Q 0.32 unknown(0) TCGA-AR-A0U0-01 11 111745970 111745970 A T FDXACB1 Missense_Mutation p.N517K 0.14 tolerated(0.25) benign(0.004) TCGA-AR-A0U0-01 11 118175641 118175641 G A CD3E 5'UTR 0.43 TCGA-AR-A0U0-01 12 46245859 46245860 - G ARID2 Frame_Shift_Ins p.C1319Vfs*6 0.38 TCGA-AR-A0U0-01 13 25264568 25264568 G T ATP12A Missense_Mutation p.Q213H 0.15 deleterious(0) possibly_damaging(0.694) TCGA-AR-A0U0-01 14 99640737 99640737 C T BCL11B Silent p.T812T 0.47 TCGA-AR-A0U0-01 15 44066444 44066444 C T ELL3 Missense_Mutation p.S325N 0.08 deleterious(0.03) benign(0.2) TCGA-AR-A0U0-01 16 19656250 19656250 G C C16orf62 Missense_Mutation p.L725F 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-AR-A0U0-01 16 3274374 3274374 C G ZNF200 Missense_Mutation p.D236H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A0U0-01 16 71686790 71686790 C T PHLPP2 Missense_Mutation p.R907Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U0-01 17 44953699 44953699 C G WNT9B Missense_Mutation p.P230R 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A0U0-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.44 deleterious(0) probably_damaging(1) TCGA-AR-A0U0-01 18 2891304 2891304 G A EMILIN2 Silent p.Q393Q 0.44 TCGA-AR-A0U0-01 18 30803162 30803162 G C CCDC178 Missense_Mutation p.Q614E 0.12 deleterious(0.01) benign(0.107) TCGA-AR-A0U0-01 18 61225594 61225594 T A SERPINB12 Missense_Mutation p.F60I 0.14 deleterious(0.03) possibly_damaging(0.775) TCGA-AR-A0U0-01 18 9134322 9134322 A G NDUFV2 3'UTR 0.10 TCGA-AR-A0U0-01 19 3452629 3452629 C G NFIC Missense_Mutation p.L412V 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-AR-A0U0-01 19 53304396 53304396 C T ZNF28 Silent p.Q234Q 0.17 TCGA-AR-A0U0-01 19 8576274 8576274 G A ZNF414 Intron 0.59 TCGA-AR-A0U0-01 1 158985702 158985702 G A IFI16 Silent p.V102V 0.10 TCGA-AR-A0U0-01 1 169679648 169679648 C T SELL Nonsense_Mutation p.W18* 0.10 TCGA-AR-A0U0-01 1 176563934 176563934 C T PAPPA2 Silent p.P398P 0.13 TCGA-AR-A0U0-01 1 17682605 17682605 C A PADI4 Missense_Mutation p.P480T 0.20 deleterious(0) probably_damaging(1) TCGA-AR-A0U0-01 1 248128766 248128766 G A OR2AK2 Missense_Mutation p.V45I 0.13 tolerated(0.27) benign(0.014) TCGA-AR-A0U0-01 20 2377157 2377157 G A TGM6 Missense_Mutation p.D144N 0.23 tolerated(0.1) benign(0.028) TCGA-AR-A0U0-01 21 18971122 18971122 G A BTG3 Missense_Mutation p.A155V 0.10 deleterious(0.04) possibly_damaging(0.466) TCGA-AR-A0U0-01 2 100910844 100910844 G T LONRF2 Missense_Mutation p.T535N 0.18 tolerated(1) probably_damaging(0.997) TCGA-AR-A0U0-01 2 109381246 109381246 T A RANBP2 Silent p.G1417G 0.11 TCGA-AR-A0U0-01 2 179593823 179593823 G A TTN Silent p.T6314T 0.13 TCGA-AR-A0U0-01 2 179650411 179650411 C T TTN Missense_Mutation p.R810H 0.24 TCGA-AR-A0U0-01 2 202259873 202259873 G A TRAK2 Intron 0.14 TCGA-AR-A0U0-01 2 225368387 225368388 - T CUL3 Frame_Shift_Ins p.N453Kfs*5 0.28 TCGA-AR-A0U0-01 2 225702539 225702539 G C DOCK10 Silent p.T930T 0.20 TCGA-AR-A0U0-01 2 227731981 227731981 G T RHBDD1 Silent p.P171P 0.17 TCGA-AR-A0U0-01 2 99858734 99858734 C T LYG2 3'UTR 0.29 TCGA-AR-A0U0-01 3 180669241 180669241 C A FXR1 Missense_Mutation p.F262L 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A0U0-01 3 183854671 183854673 AGG - EIF2B5 Intron 0.37 TCGA-AR-A0U0-01 3 184801097 184801097 C T C3orf70 Missense_Mutation p.A151T 0.12 tolerated_low_confidence(0.56) benign(0.047) TCGA-AR-A0U0-01 3 184910162 184910162 A G EHHADH Missense_Mutation p.V675A 0.44 deleterious(0.03) possibly_damaging(0.606) TCGA-AR-A0U0-01 4 172735562 172735562 G A GALNTL6 Splice_Site 0.20 TCGA-AR-A0U0-01 4 177100860 177100860 T G WDR17 3'UTR 0.30 TCGA-AR-A0U0-01 5 122491674 122491674 G A PRDM6 Missense_Mutation p.G333R 0.25 tolerated(0.13) benign(0.192) TCGA-AR-A0U0-01 5 131014737 131014737 T C FNIP1 Missense_Mutation p.N445S 0.32 deleterious(0.01) possibly_damaging(0.607) TCGA-AR-A0U0-01 5 67591104 67591115 TTAAACCAGACC - PIK3R1 In_Frame_Del p.K567_L570del 0.28 TCGA-AR-A0U0-01 6 153043015 153043015 C A MYCT1 Missense_Mutation p.S112Y 0.24 tolerated(0.61) possibly_damaging(0.724) TCGA-AR-A0U0-01 6 38834385 38834385 C T DNAH8 Missense_Mutation p.R1956C 0.41 probably_damaging(1) TCGA-AR-A0U0-01 6 52878680 52878680 G A ICK Missense_Mutation p.A311V 0.21 tolerated(0.31) benign(0.002) TCGA-AR-A0U0-01 6 56919289 56919289 T A KIAA1586 Nonsense_Mutation p.Y664* 0.10 TCGA-AR-A0U0-01 7 151927054 151927054 C T KMT2C Missense_Mutation p.C977Y 0.15 probably_damaging(0.996) TCGA-AR-A0U0-01 7 91641812 91641812 C G AKAP9 Missense_Mutation p.Q1130E 0.09 probably_damaging(0.994) TCGA-AR-A0U0-01 8 67012420 67012420 C G DNAJC5B 3'UTR 0.14 TCGA-AR-A0U0-01 9 107288781 107288781 G T OR13C4 Missense_Mutation p.A237E 0.17 deleterious(0) probably_damaging(1) TCGA-AR-A0U0-01 9 107331457 107331457 G C OR13C8 Missense_Mutation p.R3S 0.25 tolerated(0.43) benign(0.022) TCGA-AR-A0U1-01 10 101911886 101911886 C A ERLIN1 3'UTR 0.14 TCGA-AR-A0U1-01 10 104247996 104247996 C T ACTR1A Missense_Mutation p.E76K 0.33 deleterious(0.04) probably_damaging(0.968) TCGA-AR-A0U1-01 10 115540387 115540387 C G PLEKHS1 3'Flank 0.15 TCGA-AR-A0U1-01 10 15573048 15573048 C A ITGA8 Splice_Site p.X994_splice 0.20 TCGA-AR-A0U1-01 10 38407207 38407207 A G ZNF37A Silent p.T376T 0.22 TCGA-AR-A0U1-01 10 71392636 71392636 C T C10orf35 Missense_Mutation p.P63S 0.43 deleterious(0.05) probably_damaging(0.998) TCGA-AR-A0U1-01 11 1264014 1264014 G C MUC5B Silent p.L1968L 0.20 TCGA-AR-A0U1-01 11 133807856 133807856 G T IGSF9B Missense_Mutation p.A137D 0.18 deleterious(0.02) probably_damaging(0.975) TCGA-AR-A0U1-01 11 26584772 26584772 A C MUC15 Silent p.G272G 0.08 TCGA-AR-A0U1-01 11 51411671 51411671 G C OR4A5 Missense_Mutation p.T242S 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-AR-A0U1-01 11 55594925 55594925 T G OR5L2 Missense_Mutation p.I77M 0.17 deleterious(0) probably_damaging(0.94) TCGA-AR-A0U1-01 11 57235332 57235332 C T RTN4RL2 Silent p.L94L 0.19 TCGA-AR-A0U1-01 11 72300269 72300269 C G PDE2A Missense_Mutation p.G297R 0.15 tolerated(0.05) possibly_damaging(0.629) TCGA-AR-A0U1-01 12 125576043 125576043 T A AACS Missense_Mutation p.S182T 0.11 deleterious(0.01) probably_damaging(0.933) TCGA-AR-A0U1-01 12 130927134 130927134 G A RIMBP2 Missense_Mutation p.R238W 0.22 tolerated(0.19) probably_damaging(0.952) TCGA-AR-A0U1-01 12 24102601 24102601 A T SOX5 5'UTR 0.21 TCGA-AR-A0U1-01 12 25054961 25054961 G T BCAT1 Intron 0.33 TCGA-AR-A0U1-01 12 85449848 85449848 T A LRRIQ1 Missense_Mutation p.L426Q 0.23 tolerated(0.05) possibly_damaging(0.671) TCGA-AR-A0U1-01 12 85449849 85449849 A G LRRIQ1 Silent p.L426L 0.23 TCGA-AR-A0U1-01 13 36886528 36886528 A G SPG20 Missense_Mutation p.S524P 0.28 deleterious(0) possibly_damaging(0.908) TCGA-AR-A0U1-01 13 97639673 97639673 T C OXGR1 Missense_Mutation p.H114R 0.22 deleterious(0.02) probably_damaging(0.961) TCGA-AR-A0U1-01 14 91252620 91252620 C T TTC7B Silent p.K58K 0.15 TCGA-AR-A0U1-01 15 75628401 75628401 G C COMMD4 5'UTR 0.13 TCGA-AR-A0U1-01 15 77406585 77406585 G A PEAK1 Silent p.S1718S 0.13 TCGA-AR-A0U1-01 16 11931686 11931686 G T RSL1D1 Silent p.P477P 0.12 TCGA-AR-A0U1-01 16 19278387 19278387 G T SYT17 Nonsense_Mutation p.E472* 0.17 TCGA-AR-A0U1-01 16 24817928 24817928 C A TNRC6A Missense_Mutation p.Q1455K 0.24 deleterious(0.01) benign(0.345) TCGA-AR-A0U1-01 16 24817930 24817930 A T TNRC6A Missense_Mutation p.Q1455H 0.23 deleterious(0) possibly_damaging(0.868) TCGA-AR-A0U1-01 16 24979688 24979688 C G ARHGAP17 Missense_Mutation p.D149H 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A0U1-01 16 31373963 31373963 G T ITGAX Silent p.G416G 0.28 TCGA-AR-A0U1-01 16 31425771 31425771 G C ITGAD Splice_Site p.X666_splice 0.21 TCGA-AR-A0U1-01 16 47531346 47531346 C T PHKB Missense_Mutation p.P38L 0.24 tolerated(0.48) benign(0.002) TCGA-AR-A0U1-01 16 70998695 70998695 C G HYDIN Missense_Mutation p.E1908D 0.12 benign(0.002) TCGA-AR-A0U1-01 17 42265092 42265092 C G TMUB2 Missense_Mutation p.L6V 0.29 tolerated_low_confidence(0.13) benign(0.043) TCGA-AR-A0U1-01 17 5289552 5289552 C G NUP88 Missense_Mutation p.D734H 0.22 deleterious(0.01) probably_damaging(0.948) TCGA-AR-A0U1-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.32 deleterious(0) probably_damaging(1) TCGA-AR-A0U1-01 17 76803593 76803593 C T USP36 Silent p.S511S 0.43 TCGA-AR-A0U1-01 18 14803817 14803817 T G ANKRD30B Missense_Mutation p.L760V 0.18 tolerated(0.31) possibly_damaging(0.801) TCGA-AR-A0U1-01 19 12788192 12788192 T G DHPS Missense_Mutation p.S233R 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U1-01 19 15586716 15586716 A T PGLYRP2 Silent p.P255P 0.15 TCGA-AR-A0U1-01 19 38385852 38385852 A G WDR87 Missense_Mutation p.L125P 0.09 probably_damaging(0.999) TCGA-AR-A0U1-01 19 38643582 38643582 G A SIPA1L3 Silent p.E1212E 0.11 TCGA-AR-A0U1-01 19 42410774 42410774 T C ARHGEF1 Splice_Site p.X900_splice 0.27 TCGA-AR-A0U1-01 19 44635355 44635355 A G ZNF225 Silent p.R196R 0.09 TCGA-AR-A0U1-01 19 54822884 54822884 A G LILRA5 Missense_Mutation p.F171S 0.14 deleterious(0.01) probably_damaging(1) TCGA-AR-A0U1-01 1 103455074 103455074 T A COL11A1 Missense_Mutation p.R798S 0.14 unknown(0) TCGA-AR-A0U1-01 1 109952632 109952632 A C PSMA5 Missense_Mutation p.M189R 0.21 deleterious(0) probably_damaging(0.987) TCGA-AR-A0U1-01 1 155903461 155903461 T C KIAA0907 Missense_Mutation p.K73R 0.10 deleterious(0.01) benign(0.359) TCGA-AR-A0U1-01 1 156209538 156209538 A G PMF1 Intron 0.25 TCGA-AR-A0U1-01 1 156883814 156883814 T A PEAR1 Missense_Mutation p.W962R 0.29 tolerated(0.43) benign(0) TCGA-AR-A0U1-01 1 162557384 162557384 C G UAP1 Missense_Mutation p.D318E 0.11 tolerated(0.07) possibly_damaging(0.801) TCGA-AR-A0U1-01 1 16770220 16770220 G T NECAP2 Missense_Mutation p.R62S 0.14 tolerated(0.07) benign(0.096) TCGA-AR-A0U1-01 1 203821291 203821291 T C ZC3H11A Missense_Mutation p.S733P 0.05 tolerated(0.09) possibly_damaging(0.851) TCGA-AR-A0U1-01 1 205628387 205628387 C G SLC45A3 Missense_Mutation p.S546T 0.42 tolerated(0.13) benign(0.027) TCGA-AR-A0U1-01 1 209950713 209950713 A C TRAF3IP3 Missense_Mutation p.D357A 0.09 tolerated(0.08) benign(0.161) TCGA-AR-A0U1-01 1 214557148 214557148 G C PTPN14 Missense_Mutation p.H684D 0.19 tolerated(0.36) benign(0.018) TCGA-AR-A0U1-01 1 232650538 232650538 T C SIPA1L2 Missense_Mutation p.N183S 0.14 tolerated(0.47) probably_damaging(0.975) TCGA-AR-A0U1-01 1 241757684 241757684 G C OPN3 3'UTR 0.10 TCGA-AR-A0U1-01 1 32694340 32694340 A G EIF3I Missense_Mutation p.T218A 0.17 tolerated(0.47) benign(0.002) TCGA-AR-A0U1-01 1 41976178 41976178 C T HIVEP3 Missense_Mutation p.G2389R 0.18 benign(0.004) TCGA-AR-A0U1-01 20 44506036 44506036 A G ZSWIM3 Missense_Mutation p.K280R 0.22 tolerated(0.14) benign(0.024) TCGA-AR-A0U1-01 20 48124493 48124493 T A PTGIS Missense_Mutation p.E489D 0.21 tolerated(0.45) benign(0.007) TCGA-AR-A0U1-01 2 127952909 127952909 A G CYP27C1 Splice_Site p.X240_splice 0.24 TCGA-AR-A0U1-01 2 158152231 158152231 C A GALNT5 Missense_Mutation p.P600T 0.20 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U1-01 2 170011097 170011097 C G LRP2 Missense_Mutation p.L4056F 0.22 benign(0.078) TCGA-AR-A0U1-01 2 170063488 170063488 C T LRP2 Missense_Mutation p.V2248I 0.18 benign(0.006) TCGA-AR-A0U1-01 2 203242213 203242213 C T BMPR2 Nonsense_Mutation p.Q6* 0.29 TCGA-AR-A0U1-01 2 21234737 21234737 T C APOB Missense_Mutation p.E1668G 0.08 probably_damaging(0.994) TCGA-AR-A0U1-01 2 220333886 220333886 T A SPEG Missense_Mutation p.L1167Q 0.33 probably_damaging(0.986) TCGA-AR-A0U1-01 2 227920701 227920701 G C COL4A4 Silent p.P892P 0.14 TCGA-AR-A0U1-01 2 232156119 232156119 C T ARMC9 Silent p.I560I 0.18 TCGA-AR-A0U1-01 2 33526589 33526589 A G LTBP1 Missense_Mutation p.D1120G 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A0U1-01 2 65248186 65248186 C G SLC1A4 Missense_Mutation p.S502C 0.06 deleterious(0.04) possibly_damaging(0.885) TCGA-AR-A0U1-01 2 89597062 89597062 C T IGKV1-37 Missense_Mutation p.D104N 0.10 deleterious(0) possibly_damaging(0.619) TCGA-AR-A0U1-01 3 134268924 134268924 A G CEP63 Missense_Mutation p.Q401R 0.22 tolerated(0.15) possibly_damaging(0.537) TCGA-AR-A0U1-01 3 138738845 138738845 C T PRR23B Missense_Mutation p.R220H 0.23 tolerated(1) benign(0.001) TCGA-AR-A0U1-01 3 142403210 142403210 C T PLS1 Silent p.T287T 0.12 TCGA-AR-A0U1-01 3 164786524 164786524 G A SI Missense_Mutation p.R157C 0.07 deleterious(0) probably_damaging(0.993) TCGA-AR-A0U1-01 3 183899476 183899489 GCTTGCAGCGGGAA - AP2M1 Splice_Site p.X236_splice 0.20 TCGA-AR-A0U1-01 3 97356897 97356897 G T EPHA6 Missense_Mutation p.D919Y 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A0U1-01 3 97506865 97506865 C A ARL6 Missense_Mutation p.F127L 0.16 tolerated(0.16) benign(0.258) TCGA-AR-A0U1-01 4 119609080 119609080 G C METTL14 Missense_Mutation p.L23F 0.18 tolerated_low_confidence(0.18) unknown(0) TCGA-AR-A0U1-01 4 120981398 120981398 C A MAD2L1 Nonsense_Mutation p.E165* 0.09 TCGA-AR-A0U1-01 4 8620195 8620195 G A CPZ Missense_Mutation p.G515S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A0U1-01 5 138729667 138729667 C G PROB1 Missense_Mutation p.Q368H 0.38 tolerated_low_confidence(0.32) benign(0.328) TCGA-AR-A0U1-01 5 14716911 14716912 AC - ANKH Frame_Shift_Del p.S349* 0.08 TCGA-AR-A0U1-01 5 16465619 16465619 C G ZNF622 Silent p.R52R 0.18 TCGA-AR-A0U1-01 5 16465620 16465620 C A ZNF622 Missense_Mutation p.R52L 0.18 tolerated(1) benign(0) TCGA-AR-A0U1-01 5 1880876 1880876 G T IRX4 Missense_Mutation p.P124T 0.08 deleterious(0.01) probably_damaging(1) TCGA-AR-A0U1-01 5 50055554 50055554 A T PARP8 Nonsense_Mutation p.R88* 0.11 TCGA-AR-A0U1-01 5 93859789 93859789 A C KIAA0825 Missense_Mutation p.I49S 0.06 deleterious(0) possibly_damaging(0.687) TCGA-AR-A0U1-01 6 11190312 11190312 T A NEDD9 Missense_Mutation p.Q597L 0.21 tolerated(0.09) benign(0.04) TCGA-AR-A0U1-01 6 127765172 127765172 A T KIAA0408 3'UTR 0.21 TCGA-AR-A0U1-01 6 26412970 26412970 A G BTN3A1 Intron 0.12 TCGA-AR-A0U1-01 6 39874316 39874316 C G MOCS1 3'UTR 0.15 TCGA-AR-A0U1-01 7 107746436 107746436 C G LAMB4 Missense_Mutation p.K232N 0.18 deleterious(0) probably_damaging(0.993) TCGA-AR-A0U1-01 7 122111612 122111612 C T CADPS2 Nonsense_Mutation p.W668* 0.18 TCGA-AR-A0U1-01 7 126173012 126173012 T A GRM8 Silent p.A808A 0.09 TCGA-AR-A0U1-01 7 149427624 149427624 A G KRBA1 Silent p.R703R 0.08 TCGA-AR-A0U1-01 7 149500337 149500337 T G SSPO RNA 0.14 TCGA-AR-A0U1-01 7 151074354 151074354 A G NUB1 3'UTR 0.55 TCGA-AR-A0U1-01 7 99722514 99722514 C A CNPY4 3'UTR 0.43 TCGA-AR-A0U1-01 8 109001415 109001415 C A RSPO2 Missense_Mutation p.G51V 0.12 deleterious(0) probably_damaging(1) TCGA-AR-A0U1-01 8 68024243 68024243 A G CSPP1 Missense_Mutation p.E386G 0.21 deleterious(0) probably_damaging(0.99) TCGA-AR-A0U1-01 8 91937819 91937819 G T NECAB1 Missense_Mutation p.S184I 0.12 deleterious(0) benign(0.054) TCGA-AR-A0U1-01 9 97063282 97063282 C A ZNF169 Missense_Mutation p.T481K 0.14 deleterious(0) possibly_damaging(0.59) TCGA-AR-A0U1-01 X 130215598 130215598 G T ARHGAP36 5'UTR 0.21 TCGA-AR-A0U1-01 X 134713802 134713802 G C DDX26B Missense_Mutation p.E700Q 0.20 tolerated(0.44) benign(0.094) TCGA-AR-A0U1-01 X 15870488 15870488 G A AP1S2 Silent p.L54L 0.04 TCGA-AR-A0U1-01 X 26158087 26158087 A T MAGEB18 Missense_Mutation p.N329Y 0.17 tolerated(0.05) possibly_damaging(0.459) TCGA-AR-A0U1-01 X 39932980 39932980 C T BCOR Missense_Mutation p.R540Q 0.10 tolerated(0.09) benign(0.088) TCGA-AR-A0U2-01 10 3159021 3159021 C T PFKP Silent p.S475S 0.22 TCGA-AR-A0U2-01 10 53458363 53458363 C T CSTF2T Missense_Mutation p.R316H 0.46 tolerated(0.25) benign(0.004) TCGA-AR-A0U2-01 10 6054742 6054742 C T IL2RA 3'UTR 0.21 TCGA-AR-A0U2-01 10 8115746 8115746 A T GATA3 Missense_Mutation p.R365S 0.22 deleterious(0.04) probably_damaging(1) TCGA-AR-A0U2-01 10 8115874 8115875 - G GATA3 Frame_Shift_Ins p.P409Afs*99 0.41 TCGA-AR-A0U2-01 11 7530894 7530894 T C OLFML1 Silent p.H228H 0.27 TCGA-AR-A0U2-01 11 92087880 92087880 T A FAT3 Missense_Mutation p.Y868N 0.16 probably_damaging(0.997) TCGA-AR-A0U2-01 12 465641 465641 C T KDM5A Silent p.G245G 0.29 TCGA-AR-A0U2-01 12 7556322 7556322 A C CD163L1 Missense_Mutation p.V406G 0.25 deleterious(0) probably_damaging(0.995) TCGA-AR-A0U2-01 14 102384167 102384167 G A PPP2R5C Splice_Site p.X474_splice 0.25 TCGA-AR-A0U2-01 14 30046384 30046384 A T PRKD1 3'UTR 0.36 TCGA-AR-A0U2-01 14 39502361 39502361 T A SEC23A 3'UTR 0.36 TCGA-AR-A0U2-01 14 89629077 89629077 C T FOXN3 Missense_Mutation p.R385Q 0.15 tolerated(0.76) benign(0.002) TCGA-AR-A0U2-01 15 27114436 27114436 A T GABRA5 Missense_Mutation p.N14I 0.42 tolerated_low_confidence(0.24) benign(0.013) TCGA-AR-A0U2-01 15 83451757 83451759 TTC - FSD2 In_Frame_Del p.E252del 0.21 TCGA-AR-A0U2-01 16 55519539 55519539 G A MMP2 Missense_Mutation p.A228T 0.34 deleterious(0) possibly_damaging(0.778) TCGA-AR-A0U2-01 16 737628 737628 C T WDR24 Missense_Mutation p.R198Q 0.33 deleterious(0.01) possibly_damaging(0.899) TCGA-AR-A0U2-01 16 76501400 76501400 C G CNTNAP4 Missense_Mutation p.D472E 0.71 deleterious(0) probably_damaging(0.975) TCGA-AR-A0U2-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.80 deleterious(0) probably_damaging(0.993) TCGA-AR-A0U2-01 19 11834071 11834071 G T ZNF823 Missense_Mutation p.P93H 0.30 tolerated(0.07) possibly_damaging(0.711) TCGA-AR-A0U2-01 19 41743883 41743883 C T AXL Missense_Mutation p.A273V 0.42 tolerated(0.29) benign(0.016) TCGA-AR-A0U2-01 19 44770438 44770438 G A ZNF233 Missense_Mutation p.D35N 0.27 deleterious(0) probably_damaging(0.998) TCGA-AR-A0U2-01 19 55871057 55871057 C G FAM71E2 Silent p.G393G 0.33 TCGA-AR-A0U2-01 19 56369409 56369409 C T NLRP4 Missense_Mutation p.T217I 0.29 tolerated(0.07) benign(0.222) TCGA-AR-A0U2-01 1 107600277 107600277 C T PRMT6 Missense_Mutation p.P314S 0.36 tolerated(0.18) benign(0.045) TCGA-AR-A0U2-01 1 151261890 151261890 C A ZNF687 Missense_Mutation p.F836L 0.20 deleterious(0) probably_damaging(0.998) TCGA-AR-A0U2-01 1 151265399 151265399 C T PI4KB Missense_Mutation p.D806N 0.19 tolerated(0.06) benign(0.267) TCGA-AR-A0U2-01 1 161332444 161332444 C A SDHC 3'UTR 0.14 TCGA-AR-A0U2-01 1 168044758 168044758 A G DCAF6 3'UTR 0.42 TCGA-AR-A0U2-01 1 215844346 215844346 C T USH2A Missense_Mutation p.E4701K 0.22 benign(0.025) TCGA-AR-A0U2-01 1 227751396 227751396 A T ZNF678 5'UTR 0.37 TCGA-AR-A0U2-01 1 248128766 248128766 G A OR2AK2 Missense_Mutation p.V45I 0.36 tolerated(0.27) benign(0.014) TCGA-AR-A0U2-01 1 75038828 75038829 - C C1orf173 Frame_Shift_Ins p.S856Vfs*17 0.33 TCGA-AR-A0U2-01 1 93599279 93599280 - A MTF2 Frame_Shift_Ins p.G397Rfs*23 0.32 TCGA-AR-A0U2-01 20 54823848 54823848 C A MC3R 5'UTR 0.12 TCGA-AR-A0U2-01 20 54961390 54961390 G A AURKA Missense_Mutation p.A81V 0.15 tolerated(0.16) benign(0.008) TCGA-AR-A0U2-01 21 22910263 22910263 C T NCAM2 Silent p.D833D 0.31 TCGA-AR-A0U2-01 22 30891919 30891919 C T SEC14L4 Missense_Mutation p.R57Q 0.38 deleterious(0.02) benign(0.333) TCGA-AR-A0U2-01 2 138169282 138169282 C A THSD7B Missense_Mutation p.N933K 0.48 deleterious(0.03) possibly_damaging(0.607) TCGA-AR-A0U2-01 2 190332305 190332305 T C WDR75 Missense_Mutation p.I520T 0.64 tolerated(0.63) benign(0.008) TCGA-AR-A0U2-01 2 44993576 44993576 C T CAMKMT Missense_Mutation p.A257V 0.18 tolerated(0.13) benign(0.391) TCGA-AR-A0U2-01 2 90078097 90078097 C T IGKV3D-20 Missense_Mutation p.A45V 0.34 deleterious(0.01) possibly_damaging(0.793) TCGA-AR-A0U2-01 3 101136588 101136588 G C SENP7 Missense_Mutation p.R111G 0.34 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U2-01 3 126739137 126739137 C T PLXNA1 Missense_Mutation p.R1330W 0.55 deleterious(0) probably_damaging(1) TCGA-AR-A0U2-01 4 22438157 22438157 C T GPR125 Missense_Mutation p.R398H 0.21 deleterious(0) probably_damaging(0.956) TCGA-AR-A0U2-01 4 70898889 70898889 G A HTN3 Silent p.K36K 0.25 TCGA-AR-A0U2-01 5 140579297 140579297 G A PCDHB11 5'Flank 0.20 TCGA-AR-A0U2-01 5 145252330 145252330 C T GRXCR2 Missense_Mutation p.G68R 0.31 tolerated(0.26) probably_damaging(0.982) TCGA-AR-A0U2-01 6 83872606 83872606 C T DOPEY1 Nonsense_Mutation p.R2354* 0.33 TCGA-AR-A0U2-01 7 113520082 113520082 C A PPP1R3A Silent p.G355G 0.21 TCGA-AR-A0U2-01 7 128041163 128041163 G T IMPDH1 Missense_Mutation p.T137N 0.40 tolerated(0.07) benign(0.065) TCGA-AR-A0U2-01 7 138602615 138602615 G A KIAA1549 Missense_Mutation p.P586L 0.26 deleterious(0.05) benign(0.01) TCGA-AR-A0U2-01 7 139297952 139297952 G C HIPK2 Missense_Mutation p.A703G 0.54 deleterious(0) benign(0.141) TCGA-AR-A0U2-01 7 24902870 24902870 G T OSBPL3 Missense_Mutation p.H273Q 0.13 tolerated(0.68) benign(0.001) TCGA-AR-A0U2-01 7 44151594 44151594 G A AEBP1 Missense_Mutation p.R661H 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A0U2-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.19 TCGA-AR-A0U2-01 8 87242353 87242353 C T SLC7A13 Missense_Mutation p.V52I 0.22 tolerated(1) benign(0.014) TCGA-AR-A0U2-01 9 115806423 115806423 T C ZFP37 Missense_Mutation p.K159E 0.22 tolerated(0.19) benign(0.01) TCGA-AR-A0U2-01 9 123778623 123778623 C T C5 Silent p.G635G 0.32 TCGA-AR-A0U2-01 X 114242577 114242577 G A IL13RA2 Silent p.C305C 0.49 TCGA-AR-A0U3-01 10 101595869 101595869 C T ABCC2 Missense_Mutation p.R1146C 0.35 deleterious(0.05) probably_damaging(1) TCGA-AR-A0U3-01 10 98303635 98303635 C A TM9SF3 Intron 0.44 TCGA-AR-A0U3-01 11 10791755 10791755 A G CTR9 Splice_Site p.X704_splice 0.07 TCGA-AR-A0U3-01 11 8969901 8969901 T A TMEM9B Missense_Mutation p.K188M 0.37 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U3-01 12 100482727 100482727 T C UHRF1BP1L Silent p.L329L 0.46 TCGA-AR-A0U3-01 12 107078653 107078653 C T RFX4 Intron 0.33 TCGA-AR-A0U3-01 12 109288102 109288102 C T DAO Nonsense_Mutation p.R191* 0.41 TCGA-AR-A0U3-01 12 118472017 118472017 G T WSB2 Missense_Mutation p.T400K 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-AR-A0U3-01 12 122287635 122287635 C T HPD Missense_Mutation p.G159E 0.08 deleterious(0.01) possibly_damaging(0.495) TCGA-AR-A0U3-01 13 27259977 27259977 G A WASF3 Missense_Mutation p.D502N 0.45 deleterious(0) unknown(0) TCGA-AR-A0U3-01 13 30088615 30088615 C T SLC7A1 3'UTR 0.25 TCGA-AR-A0U3-01 15 24923646 24923646 C - NPAP1 Frame_Shift_Del p.Q878Rfs*14 0.28 TCGA-AR-A0U3-01 15 42104263 42104263 G A MAPKBP1 Missense_Mutation p.A146T 0.41 deleterious(0.04) benign(0.108) TCGA-AR-A0U3-01 15 91496180 91496180 G T UNC45A Missense_Mutation p.K775N 0.38 tolerated(0.09) benign(0.079) TCGA-AR-A0U3-01 16 23847488 23847488 G A PRKCB 5'UTR 0.27 TCGA-AR-A0U3-01 16 3640194 3640194 C A SLX4 Missense_Mutation p.D1149Y 0.37 deleterious(0.01) possibly_damaging(0.759) TCGA-AR-A0U3-01 16 4042255 4042255 C A ADCY9 Missense_Mutation p.G700V 0.37 tolerated(0.12) benign(0.086) TCGA-AR-A0U3-01 17 42171145 42171145 C T HDAC5 Missense_Mutation p.G52E 0.21 tolerated_low_confidence(0.31) benign(0.334) TCGA-AR-A0U3-01 17 42745436 42745436 C G C17orf104 Nonsense_Mutation p.Y719* 0.61 TCGA-AR-A0U3-01 17 43183002 43183002 C T NMT1 Nonsense_Mutation p.Q496* 0.61 TCGA-AR-A0U3-01 17 489514 489514 C A VPS53 Missense_Mutation p.D437Y 0.65 deleterious(0) probably_damaging(0.996) TCGA-AR-A0U3-01 18 2743899 2743899 C T SMCHD1 Silent p.L1258L 0.38 TCGA-AR-A0U3-01 19 19304795 19304795 C T RFXANK Nonsense_Mutation p.Q14* 0.33 TCGA-AR-A0U3-01 19 6374526 6374526 G A ALKBH7 Missense_Mutation p.M143I 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U3-01 1 147095879 147095879 C T BCL9 Missense_Mutation p.R1134W 0.45 deleterious(0.01) probably_damaging(0.982) TCGA-AR-A0U3-01 1 15802980 15802980 G A CELA2B Silent p.A23A 0.69 TCGA-AR-A0U3-01 1 163117185 163117185 C T RGS5 Missense_Mutation p.D169N 0.32 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U3-01 1 1848267 1848267 C T CALML6 Silent p.S110S 0.59 TCGA-AR-A0U3-01 1 242253180 242253180 G A PLD5 Silent p.G529G 0.27 TCGA-AR-A0U3-01 1 44595388 44595388 G A KLF17 Missense_Mutation p.G149R 0.25 tolerated(0.15) benign(0.036) TCGA-AR-A0U3-01 1 45213334 45213334 G A KIF2C Missense_Mutation p.R93Q 0.58 deleterious(0.01) benign(0.361) TCGA-AR-A0U3-01 2 107040513 107040516 TAGA - RGPD3 Frame_Shift_Del p.K1304Lfs*5 0.30 TCGA-AR-A0U3-01 3 110837787 110837787 T G PVRL3 Missense_Mutation p.L263V 0.41 deleterious(0) probably_damaging(0.991) TCGA-AR-A0U3-01 3 62356989 62356989 C A FEZF2 Silent p.A341A 0.37 TCGA-AR-A0U3-01 4 135121651 135121651 C T PABPC4L Missense_Mutation p.R233Q 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-AR-A0U3-01 4 135122010 135122010 G C PABPC4L Nonsense_Mutation p.Y113* 0.10 TCGA-AR-A0U3-01 4 166418809 166418809 T A CPE 3'UTR 0.05 TCGA-AR-A0U3-01 5 13737575 13737575 C T DNAH5 Missense_Mutation p.M3747I 0.32 benign(0.072) TCGA-AR-A0U3-01 5 140788351 140788351 A T PCDHGB6 Missense_Mutation p.L194F 0.36 deleterious(0) probably_damaging(0.99) TCGA-AR-A0U3-01 7 123150002 123150003 - A IQUB Frame_Shift_Ins p.S162Ffs*21 0.30 TCGA-AR-A0U3-01 7 141765159 141765159 G A MGAM Silent p.Q1503Q 0.12 TCGA-AR-A0U3-01 7 45123881 45123881 C T NACAD Missense_Mutation p.G633D 0.34 tolerated(0.37) benign(0) TCGA-AR-A0U3-01 9 27169494 27169494 G A TEK Silent p.V165V 0.62 TCGA-AR-A0U4-01 10 12191616 12191616 C G SEC61A2 Missense_Mutation p.I81M 0.05 deleterious(0) possibly_damaging(0.907) TCGA-AR-A0U4-01 10 408505 408505 G C DIP2C Missense_Mutation p.L907V 0.16 deleterious(0) probably_damaging(0.978) TCGA-AR-A0U4-01 10 50034788 50034788 C T WDFY4 Missense_Mutation p.L2019F 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U4-01 10 6157483 6157483 C G RBM17 Missense_Mutation p.D390E 0.21 tolerated(0.85) benign(0) TCGA-AR-A0U4-01 10 70531089 70531089 G C CCAR1 Missense_Mutation p.D809H 0.19 tolerated(0.06) unknown(0) TCGA-AR-A0U4-01 10 71883252 71883252 G A AIFM2 Missense_Mutation p.S68F 0.13 deleterious(0.03) probably_damaging(0.95) TCGA-AR-A0U4-01 10 81374567 81374567 A G SFTPA1 3'Flank 0.10 TCGA-AR-A0U4-01 10 99218594 99218629 GTCTCTTCTTGTCATCCAGGGGTTTGGCTAAGGCCC - MMS19 In_Frame_Del p.R998_R1009del 0.15 TCGA-AR-A0U4-01 11 103043913 103043913 A C DYNC2H1 Silent p.R1813R 0.23 TCGA-AR-A0U4-01 11 104872843 104872843 T A CASP5 Missense_Mutation p.N223I 0.24 tolerated(0.06) benign(0.077) TCGA-AR-A0U4-01 11 124947164 124947164 C T SLC37A2 Silent p.P60P 0.39 TCGA-AR-A0U4-01 11 125765415 125765415 A G PUS3 Silent p.Y216Y 0.07 TCGA-AR-A0U4-01 11 5809246 5809246 C T OR52N1 Silent p.G267G 0.33 TCGA-AR-A0U4-01 11 8148314 8148314 G C RIC3 Missense_Mutation p.L188V 0.25 deleterious(0) possibly_damaging(0.839) TCGA-AR-A0U4-01 12 102811671 102811671 G C IGF1 Missense_Mutation p.I171M 0.24 tolerated_low_confidence(0.25) benign(0.002) TCGA-AR-A0U4-01 12 10313469 10313469 C A OLR1 Silent p.S160S 0.21 TCGA-AR-A0U4-01 12 10365712 10365712 A T GABARAPL1 5'UTR 0.33 TCGA-AR-A0U4-01 12 104513313 104513313 C G NFYB 3'UTR 0.21 TCGA-AR-A0U4-01 12 118105367 118105367 G A KSR2 Silent p.S361S 0.29 TCGA-AR-A0U4-01 12 121785662 121785662 T A ANAPC5 Missense_Mutation p.K77I 0.22 deleterious(0.01) benign(0.165) TCGA-AR-A0U4-01 12 3806004 3806004 C G EFCAB4B Missense_Mutation p.K54N 0.24 deleterious(0) probably_damaging(0.968) TCGA-AR-A0U4-01 13 24876828 24876828 C A SPATA13 Missense_Mutation p.Q1251K 0.19 deleterious(0.03) probably_damaging(0.966) TCGA-AR-A0U4-01 13 32802751 32802751 G T FRY Missense_Mutation p.D1789Y 0.22 deleterious(0.01) possibly_damaging(0.781) TCGA-AR-A0U4-01 13 42748243 42748243 T C DGKH Missense_Mutation p.L472P 0.21 tolerated(0.34) possibly_damaging(0.616) TCGA-AR-A0U4-01 14 20842649 20842649 G A TEP1 Missense_Mutation p.S2137L 0.14 tolerated(0.26) benign(0.008) TCGA-AR-A0U4-01 14 22409716 22409716 C A TRAV9-2 Missense_Mutation p.A69D 0.15 tolerated(0.06) benign(0.017) TCGA-AR-A0U4-01 14 64641829 64641829 G A SYNE2 Missense_Mutation p.M5801I 0.44 benign(0.073) TCGA-AR-A0U4-01 14 69259623 69259623 G C ZFP36L1 Missense_Mutation p.F11L 0.34 tolerated(0.23) benign(0.331) TCGA-AR-A0U4-01 14 96924483 96924483 G T AK7 Nonsense_Mutation p.E431* 0.17 TCGA-AR-A0U4-01 15 101872156 101872156 A G PCSK6 Missense_Mutation p.S646P 0.44 tolerated(0.07) benign(0.028) TCGA-AR-A0U4-01 15 22840285 22840285 G A TUBGCP5 Silent p.L117L 0.24 TCGA-AR-A0U4-01 15 34395497 34395497 G C PGBD4 Silent p.L255L 0.27 TCGA-AR-A0U4-01 15 49064728 49064728 C A CEP152 Missense_Mutation p.D580Y 0.05 deleterious(0) possibly_damaging(0.807) TCGA-AR-A0U4-01 15 49462506 49462506 G C GALK2 5'UTR 0.29 TCGA-AR-A0U4-01 15 49776700 49776700 A T FGF7 Nonstop_Mutation p.*195Lext*16 0.15 TCGA-AR-A0U4-01 15 70961422 70961422 C A UACA Missense_Mutation p.G534V 0.09 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 15 83240140 83240140 C G CPEB1 Missense_Mutation p.W111C 0.33 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-AR-A0U4-01 15 83438615 83438615 T C FSD2 Missense_Mutation p.E430G 0.15 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 15 90445005 90445005 C - C15orf38 3'UTR 0.18 TCGA-AR-A0U4-01 15 90794054 90794054 A C TTLL13 Missense_Mutation p.K64N 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.678) TCGA-AR-A0U4-01 16 1717989 1717989 G C CRAMP1L Missense_Mutation p.E1043D 0.30 tolerated_low_confidence(0.07) probably_damaging(0.96) TCGA-AR-A0U4-01 16 20410472 20410472 C T PDILT Missense_Mutation p.A51T 0.23 tolerated(0.14) benign(0.269) TCGA-AR-A0U4-01 16 23091346 23091346 C G USP31 Silent p.G699G 0.26 TCGA-AR-A0U4-01 16 53260373 53260375 AAA - CHD9 In_Frame_Del p.K666del 0.18 TCGA-AR-A0U4-01 16 67866406 67866406 C G CENPT Missense_Mutation p.L51F 0.12 tolerated(0.11) benign(0.325) TCGA-AR-A0U4-01 16 72159951 72159951 C G PMFBP1 Missense_Mutation p.Q723H 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-AR-A0U4-01 16 87741983 87741983 C T KLHDC4 Missense_Mutation p.G513R 0.38 deleterious_low_confidence(0.04) unknown(0) TCGA-AR-A0U4-01 16 9934578 9934578 A G GRIN2A Missense_Mutation p.V526A 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-AR-A0U4-01 17 16526952 16526952 G A ZNF624 Silent p.Y416Y 0.19 TCGA-AR-A0U4-01 17 41244185 41244186 - T BRCA1 Frame_Shift_Ins p.N1121Kfs*12 0.23 TCGA-AR-A0U4-01 17 56729272 56729272 C A TEX14 Missense_Mutation p.V31F 0.18 deleterious(0) probably_damaging(0.996) TCGA-AR-A0U4-01 17 61684785 61684785 C T TACO1 Silent p.V218V 0.49 TCGA-AR-A0U4-01 17 61902771 61902771 A C FTSJ3 Silent p.R142R 0.11 TCGA-AR-A0U4-01 17 62793423 62793423 G C PLEKHM1P RNA 0.48 TCGA-AR-A0U4-01 17 62856069 62856069 C T LRRC37A3 Missense_Mutation p.E1399K 0.15 tolerated(0.13) benign(0.175) TCGA-AR-A0U4-01 17 72287263 72287263 G T DNAI2 Nonsense_Mutation p.G239* 0.18 TCGA-AR-A0U4-01 17 73987591 73987591 C T TEN1 Missense_Mutation p.A46V 0.25 deleterious(0.05) benign(0.235) TCGA-AR-A0U4-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 18 14105748 14105748 G T ZNF519 Nonsense_Mutation p.S264* 0.17 TCGA-AR-A0U4-01 18 31320100 31320100 T G ASXL3 Missense_Mutation p.V911G 0.32 benign(0.002) TCGA-AR-A0U4-01 18 33785056 33785056 A - MOCOS Frame_Shift_Del p.K346Sfs*90 0.13 TCGA-AR-A0U4-01 18 580663 580663 C T CETN1 Silent p.S85S 0.15 TCGA-AR-A0U4-01 18 72913227 72913227 A G ZADH2 3'UTR 0.38 TCGA-AR-A0U4-01 19 12087913 12087913 G C ZNF763 Missense_Mutation p.D25H 0.08 deleterious(0.01) benign(0.442) TCGA-AR-A0U4-01 19 1417497 1417497 A C DAZAP1 Splice_Site p.X10_splice 0.12 TCGA-AR-A0U4-01 19 37619823 37619823 C T ZNF420 Nonsense_Mutation p.Q644* 0.17 TCGA-AR-A0U4-01 19 43372953 43372953 G T PSG1 Silent p.R315R 0.21 TCGA-AR-A0U4-01 19 45186832 45186832 G C CEACAM19 3'UTR 0.18 TCGA-AR-A0U4-01 19 53158858 53158858 T C CTD-3099C6.9 5'Flank 0.23 TCGA-AR-A0U4-01 19 55964628 55964628 G A ISOC2 3'UTR 0.06 TCGA-AR-A0U4-01 19 56459620 56459620 C T NLRP8 Missense_Mutation p.R118C 0.24 deleterious(0) possibly_damaging(0.545) TCGA-AR-A0U4-01 19 58724128 58724128 A T ZNF274 Missense_Mutation p.K526N 0.43 deleterious(0) probably_damaging(0.974) TCGA-AR-A0U4-01 19 58772496 58772496 C G ZNF544 Missense_Mutation p.P175R 0.24 tolerated(0.18) benign(0.008) TCGA-AR-A0U4-01 19 9089290 9089290 C T MUC16 Missense_Mutation p.S842N 0.17 unknown(0) TCGA-AR-A0U4-01 1 12429735 12429735 G A VPS13D Missense_Mutation p.A3596T 0.38 probably_damaging(0.99) TCGA-AR-A0U4-01 1 152279766 152279766 C T FLG Silent p.S2532S 0.03 TCGA-AR-A0U4-01 1 152552220 152552220 G A LCE3D Missense_Mutation p.R65C 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-AR-A0U4-01 1 154148687 154148687 T G TPM3 Missense_Mutation p.Q94P 0.17 deleterious(0) probably_damaging(0.998) TCGA-AR-A0U4-01 1 155921711 155921711 C G ARHGEF2 Missense_Mutation p.R724T 0.24 deleterious(0) benign(0.024) TCGA-AR-A0U4-01 1 159923245 159923245 T G SLAMF9 Missense_Mutation p.Y82S 0.19 deleterious(0) probably_damaging(0.983) TCGA-AR-A0U4-01 1 160723047 160723047 G C SLAMF7 3'UTR 0.11 TCGA-AR-A0U4-01 1 169845177 169845177 C G SCYL3 Missense_Mutation p.G136A 0.13 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 1 169961326 169961326 T C KIFAP3 Silent p.S418S 0.04 TCGA-AR-A0U4-01 1 174274155 174274155 A G RABGAP1L Missense_Mutation p.D452G 0.17 deleterious(0.02) benign(0.033) TCGA-AR-A0U4-01 1 179887382 179887382 G C TOR1AIP1 3'UTR 0.21 TCGA-AR-A0U4-01 1 186934649 186934649 G C PLA2G4A Missense_Mutation p.R563T 0.20 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 1 192547392 192547392 C T RGS1 Silent p.F107F 0.07 TCGA-AR-A0U4-01 1 197586881 197586881 G T DENND1B Silent p.A227A 0.15 TCGA-AR-A0U4-01 1 203452522 203452522 C G PRELP Missense_Mutation p.F70L 0.15 tolerated(0.14) possibly_damaging(0.889) TCGA-AR-A0U4-01 1 207273267 207273267 T A C4BPB Nonsense_Mutation p.L251* 0.14 TCGA-AR-A0U4-01 1 216246506 216246506 A T USH2A Missense_Mutation p.N1903K 0.17 benign(0.234) TCGA-AR-A0U4-01 1 222923350 222923350 C T FAM177B Nonsense_Mutation p.Q143* 0.12 TCGA-AR-A0U4-01 1 222923510 222923510 C G FAM177B 3'UTR 0.22 TCGA-AR-A0U4-01 1 224621463 224621463 C T WDR26 Silent p.K115K 0.15 TCGA-AR-A0U4-01 1 226413484 226413484 C G MIXL1 Missense_Mutation p.H224D 0.14 deleterious(0) probably_damaging(0.909) TCGA-AR-A0U4-01 1 233515289 233515289 G A MLK4 Missense_Mutation p.G846D 0.20 tolerated(0.57) benign(0.003) TCGA-AR-A0U4-01 1 243328799 243328799 T C CEP170 Silent p.P821P 0.24 TCGA-AR-A0U4-01 1 43917393 43917393 G A HYI Intron 0.17 TCGA-AR-A0U4-01 1 47610575 47610575 G A CYP4A22 Silent p.P385P 0.33 TCGA-AR-A0U4-01 1 48771547 48771547 C T SPATA6 Missense_Mutation p.E400K 0.22 tolerated(0.2) benign(0.066) TCGA-AR-A0U4-01 1 6885189 6885189 C A CAMTA1 Silent p.I51I 0.14 TCGA-AR-A0U4-01 1 85392358 85392358 T C MCOLN2 3'UTR 0.10 TCGA-AR-A0U4-01 1 90401198 90401198 G C LRRC8D Silent p.G857G 0.37 TCGA-AR-A0U4-01 1 95538476 95538476 C T ALG14 5'UTR 0.36 TCGA-AR-A0U4-01 20 39708771 39708771 C A TOP1 Missense_Mutation p.P128T 0.13 tolerated(0.08) benign(0.008) TCGA-AR-A0U4-01 20 5924616 5924616 C A TRMT6 Missense_Mutation p.A174S 0.17 tolerated(0.29) possibly_damaging(0.475) TCGA-AR-A0U4-01 22 26299662 26299662 A G MYO18B Missense_Mutation p.E1671G 0.13 deleterious(0) probably_damaging(0.976) TCGA-AR-A0U4-01 22 31685287 31685287 G C PIK3IP1 Intron 0.19 TCGA-AR-A0U4-01 2 105990062 105990062 G T FHL2 Missense_Mutation p.N95K 0.20 tolerated(0.07) benign(0.275) TCGA-AR-A0U4-01 2 113532775 113532775 C T IL1A Missense_Mutation p.G229S 0.27 tolerated(0.09) probably_damaging(0.98) TCGA-AR-A0U4-01 2 113885269 113885269 C T IL1RN Missense_Mutation p.T26M 0.23 deleterious(0.01) possibly_damaging(0.8) TCGA-AR-A0U4-01 2 165986515 165986515 C T SCN3A Missense_Mutation p.E953K 0.21 deleterious(0) benign(0.017) TCGA-AR-A0U4-01 2 172582151 172582151 G C DYNC1I2 Missense_Mutation p.V179L 0.13 tolerated(0.61) benign(0.001) TCGA-AR-A0U4-01 2 179610505 179610505 G T TTN Intron 0.19 TCGA-AR-A0U4-01 2 190530828 190530828 C G ASNSD1 5'UTR 0.13 TCGA-AR-A0U4-01 2 190531007 190531007 C T ASNSD1 Missense_Mutation p.S50F 0.10 deleterious(0.01) benign(0.248) TCGA-AR-A0U4-01 2 190531012 190531012 C A ASNSD1 Missense_Mutation p.H52N 0.09 tolerated(0.07) possibly_damaging(0.852) TCGA-AR-A0U4-01 2 190532013 190532013 C T ASNSD1 Silent p.F385F 0.10 TCGA-AR-A0U4-01 2 190532074 190532074 C T ASNSD1 Nonsense_Mutation p.R406* 0.07 TCGA-AR-A0U4-01 2 190532156 190532156 C A ASNSD1 Missense_Mutation p.S433Y 0.05 deleterious(0) probably_damaging(0.928) TCGA-AR-A0U4-01 2 190532250 190532250 C G ASNSD1 Silent p.V464V 0.10 TCGA-AR-A0U4-01 2 190532308 190532308 C G ASNSD1 Missense_Mutation p.Q484E 0.08 tolerated(0.54) benign(0.02) TCGA-AR-A0U4-01 2 190532498 190532498 C A ASNSD1 Silent p.L491L 0.10 TCGA-AR-A0U4-01 2 190611212 190611212 G C ANKAR Missense_Mutation p.K1388N 0.27 tolerated_low_confidence(0.06) benign(0.004) TCGA-AR-A0U4-01 2 225695261 225695261 G C DOCK10 Missense_Mutation p.I1011M 0.19 tolerated(0.15) possibly_damaging(0.463) TCGA-AR-A0U4-01 2 233245183 233245183 G T ALPP Silent p.P282P 0.23 TCGA-AR-A0U4-01 2 24949462 24949462 A C NCOA1 Missense_Mutation p.L868F 0.04 tolerated(0.24) benign(0.015) TCGA-AR-A0U4-01 2 25062816 25062816 C G ADCY3 Missense_Mutation p.Q427H 0.33 deleterious(0) probably_damaging(0.987) TCGA-AR-A0U4-01 2 27849675 27849675 G T CCDC121 3'Flank 0.18 TCGA-AR-A0U4-01 2 31147115 31147115 G A GALNT14 Missense_Mutation p.S422F 0.09 deleterious(0.02) possibly_damaging(0.861) TCGA-AR-A0U4-01 2 47184096 47184096 A G TTC7A Missense_Mutation p.N156S 0.18 tolerated(0.58) benign(0.017) TCGA-AR-A0U4-01 2 54080944 54080944 G C GPR75 Missense_Mutation p.S317C 0.18 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 2 54131220 54131220 G A PSME4 Missense_Mutation p.P1006L 0.18 deleterious(0) possibly_damaging(0.852) TCGA-AR-A0U4-01 2 54570904 54570904 A T C2orf73 Silent p.P94P 0.18 TCGA-AR-A0U4-01 3 101540536 101540536 G A NXPE3 Missense_Mutation p.R473Q 0.45 deleterious(0) probably_damaging(0.997) TCGA-AR-A0U4-01 3 134078969 134078969 C T AMOTL2 Missense_Mutation p.R621K 0.12 tolerated(0.33) probably_damaging(0.936) TCGA-AR-A0U4-01 3 146233879 146233879 A T PLSCR1 Missense_Mutation p.F304I 0.11 deleterious(0) possibly_damaging(0.542) TCGA-AR-A0U4-01 3 149042729 149042729 G A TM4SF18 Silent p.V116V 0.07 TCGA-AR-A0U4-01 3 169637283 169637283 G T SAMD7 5'UTR 0.17 TCGA-AR-A0U4-01 3 183585780 183585780 G A PARL Missense_Mutation p.S65L 0.04 tolerated(0.25) benign(0.002) TCGA-AR-A0U4-01 3 183951521 183951521 G T VWA5B2 Missense_Mutation p.G230C 0.38 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 3 32806282 32806282 C G CNOT10 Missense_Mutation p.A722G 0.12 deleterious(0.01) probably_damaging(1) TCGA-AR-A0U4-01 3 36873231 36873231 C T TRANK1 Missense_Mutation p.V2571M 0.44 deleterious(0.02) benign(0.217) TCGA-AR-A0U4-01 3 4774890 4774890 A G ITPR1 Missense_Mutation p.K1765R 0.15 tolerated(0.35) benign(0.008) TCGA-AR-A0U4-01 3 48789035 48789035 C A PRKAR2A Missense_Mutation p.G400C 0.26 deleterious(0.05) benign(0.155) TCGA-AR-A0U4-01 3 57545791 57545791 A G PDE12 3'UTR 0.35 TCGA-AR-A0U4-01 3 9757047 9757047 A T CPNE9 Missense_Mutation p.E256V 0.12 deleterious(0) probably_damaging(0.998) TCGA-AR-A0U4-01 3 97744433 97744433 G A GABRR3 RNA 0.07 TCGA-AR-A0U4-01 3 98240270 98240270 C G CLDND1 Missense_Mutation p.R23T 0.30 deleterious_low_confidence(0.03) benign(0.107) TCGA-AR-A0U4-01 4 100126182 100126182 C G ADH6 Missense_Mutation p.D335H 0.12 deleterious(0) probably_damaging(0.971) TCGA-AR-A0U4-01 4 100264119 100264119 T G ADH1C Missense_Mutation p.I221L 0.06 possibly_damaging(0.776) TCGA-AR-A0U4-01 4 100518317 100518317 C T MTTP Missense_Mutation p.H335Y 0.20 tolerated(1) benign(0.027) TCGA-AR-A0U4-01 4 113544988 113544988 A G C4orf21 Silent p.F49F 0.09 TCGA-AR-A0U4-01 4 119718966 119718966 C T SEC24D Splice_Site p.X305_splice 0.16 TCGA-AR-A0U4-01 4 125591124 125591124 G C ANKRD50 Missense_Mutation p.S1103C 0.21 deleterious(0.04) possibly_damaging(0.84) TCGA-AR-A0U4-01 4 71509354 71509354 G T ENAM Missense_Mutation p.M737I 0.14 tolerated(0.62) benign(0.001) TCGA-AR-A0U4-01 4 76809445 76809445 C A PPEF2 Nonsense_Mutation p.E152* 0.04 TCGA-AR-A0U4-01 4 90816579 90816579 G C MMRN1 Missense_Mutation p.A153P 0.20 tolerated(0.15) possibly_damaging(0.451) TCGA-AR-A0U4-01 5 132428416 132428416 C A HSPA4 Missense_Mutation p.P529T 0.11 tolerated(0.27) benign(0.155) TCGA-AR-A0U4-01 5 137803252 137803252 A C EGR1 Missense_Mutation p.I372L 0.38 deleterious(0) unknown(0) TCGA-AR-A0U4-01 5 13886097 13886097 C A DNAH5 Missense_Mutation p.V907F 0.15 benign(0.003) TCGA-AR-A0U4-01 5 140735294 140735294 G C PCDHGA4 Missense_Mutation p.G176A 0.32 tolerated_low_confidence(0.76) benign(0.02) TCGA-AR-A0U4-01 5 154202056 154202056 G C FAXDC2 Silent p.L218L 0.13 TCGA-AR-A0U4-01 5 156593274 156593274 C G FAM71B 5'UTR 0.15 TCGA-AR-A0U4-01 5 35628657 35628657 G C SPEF2 Missense_Mutation p.D52H 0.15 deleterious(0) benign(0.354) TCGA-AR-A0U4-01 5 96103182 96103182 C G CAST Nonsense_Mutation p.S683* 0.25 TCGA-AR-A0U4-01 6 114379035 114379035 T A HS3ST5 Missense_Mutation p.M143L 0.11 deleterious(0) probably_damaging(0.999) TCGA-AR-A0U4-01 6 132966526 132966527 AT - TAAR1 Frame_Shift_Del p.M206Vfs*12 0.10 TCGA-AR-A0U4-01 6 137519081 137519081 T A IFNGR1 3'UTR 0.11 TCGA-AR-A0U4-01 6 160328919 160328919 G C MAS1 Missense_Mutation p.R311P 0.18 tolerated(0.14) benign(0.233) TCGA-AR-A0U4-01 6 26413605 26413605 A T BTN3A1 Silent p.I409I 0.13 TCGA-AR-A0U4-01 6 36294524 36294524 G C C6orf222 Missense_Mutation p.L267V 0.10 tolerated(0.06) benign(0.016) TCGA-AR-A0U4-01 6 43322977 43322977 G A ZNF318 Missense_Mutation p.P699S 0.41 benign(0.351) TCGA-AR-A0U4-01 6 52343923 52343923 T G EFHC1 Missense_Mutation p.V456G 0.08 deleterious(0.01) probably_damaging(0.925) TCGA-AR-A0U4-01 6 56380461 56380461 T G DST Missense_Mutation p.K3498N 0.15 probably_damaging(0.991) TCGA-AR-A0U4-01 6 76660650 76660650 C A IMPG1 Missense_Mutation p.D485Y 0.18 deleterious(0) possibly_damaging(0.784) TCGA-AR-A0U4-01 7 129008264 129008264 C A AHCYL2 Intron 0.04 TCGA-AR-A0U4-01 7 1474779 1474779 G C MICALL2 Missense_Mutation p.Q866E 0.21 deleterious(0.01) benign(0.257) TCGA-AR-A0U4-01 7 2296575 2296575 G T SNX8 Silent p.V406V 0.35 TCGA-AR-A0U4-01 7 37780085 37780085 C T GPR141 Silent p.G30G 0.33 TCGA-AR-A0U4-01 7 55588782 55588782 G C VOPP1 Silent p.L32L 0.07 TCGA-AR-A0U4-01 7 56006733 56006733 A G ZNF713 Silent p.E109E 0.09 TCGA-AR-A0U4-01 7 65705493 65705493 T G TPST1 Missense_Mutation p.H27Q 0.09 tolerated_low_confidence(1) benign(0.004) TCGA-AR-A0U4-01 8 113267585 113267585 C T CSMD3 Missense_Mutation p.E3312K 0.08 tolerated(0.28) possibly_damaging(0.76) TCGA-AR-A0U4-01 8 117778815 117778815 C G UTP23 5'UTR 0.36 TCGA-AR-A0U4-01 8 124265657 124265657 C T ZHX1 Missense_Mutation p.D844N 0.03 tolerated(0.37) benign(0.115) TCGA-AR-A0U4-01 8 124525447 124525447 C G FBXO32 Missense_Mutation p.Q214H 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-AR-A0U4-01 8 144398201 144398201 A G TOP1MT Missense_Mutation p.F476L 0.10 tolerated(0.06) benign(0.143) TCGA-AR-A0U4-01 8 30651782 30651782 C G PPP2CB Missense_Mutation p.G168R 0.29 deleterious(0) probably_damaging(0.998) TCGA-AR-A0U4-01 8 39103623 39103623 G T ADAM32 Missense_Mutation p.V614L 0.23 tolerated(0.18) benign(0.039) TCGA-AR-A0U4-01 8 82667664 82667664 A T CHMP4C Missense_Mutation p.Q143L 0.03 tolerated(0.05) possibly_damaging(0.477) TCGA-AR-A0U4-01 8 99440889 99440902 GAAATCGTGGAGCA - KCNS2 Frame_Shift_Del p.E228Lfs*9 0.25 TCGA-AR-A0U4-01 9 116048523 116048523 G C PRPF4 Missense_Mutation p.C255S 0.13 deleterious(0.02) benign(0.314) TCGA-AR-A0U4-01 9 130428533 130428533 C G STXBP1 Missense_Mutation p.A251G 0.20 deleterious(0) probably_damaging(0.997) TCGA-AR-A0U4-01 9 34093308 34093308 C G DCAF12 Missense_Mutation p.V334L 0.16 tolerated(1) possibly_damaging(0.582) TCGA-AR-A0U4-01 9 36339695 36339695 C T RNF38 3'UTR 0.17 TCGA-AR-A0U4-01 9 71098895 71098895 C G PGM5 Silent p.V470V 0.05 TCGA-AR-A0U4-01 9 73461398 73461398 T G TRPM3 Missense_Mutation p.Q191P 0.20 deleterious(0) possibly_damaging(0.628) TCGA-AR-A0U4-01 X 118239057 118239057 A T KIAA1210 Silent p.P322P 0.28 TCGA-AR-A0U4-01 X 148044260 148044260 G C AFF2 Missense_Mutation p.R902S 0.15 tolerated(0.06) benign(0.433) TCGA-AR-A0U4-01 X 149631099 149631099 G A MAMLD1 Intron 0.24 TCGA-AR-A0U4-01 X 154004477 154004477 G A DKC1 Missense_Mutation p.E452K 0.22 tolerated(0.18) benign(0.011) TCGA-AR-A0U4-01 X 41390422 41390422 C A CASK Missense_Mutation p.K781N 0.10 deleterious(0.01) benign(0.227) TCGA-AR-A0U4-01 X 44703517 44703517 C T DUSP21 Missense_Mutation p.R47C 0.21 tolerated(0.1) benign(0.052) TCGA-AR-A0U4-01 X 47775310 47775310 C A ZNF81 Missense_Mutation p.A422D 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A0U4-01 X 54986262 54986262 C T PFKFB1 Missense_Mutation p.A128T 0.24 possibly_damaging(0.569) TCGA-AR-A0U4-01 X 70145578 70145578 C A SLC7A3 3'UTR 0.16 TCGA-AR-A0U4-01 X 72674408 72674408 T G CDX4 Missense_Mutation p.I281R 0.23 tolerated(0.12) benign(0.001) TCGA-AR-A1AH-01 10 49701493 49701493 C T ARHGAP22 Intron 0.43 TCGA-AR-A1AH-01 10 98146742 98146742 T C TLL2 Missense_Mutation p.Y607C 0.65 deleterious(0) probably_damaging(0.925) TCGA-AR-A1AH-01 11 14990269 14990269 C A CALCA 3'UTR 0.45 TCGA-AR-A1AH-01 11 18456458 18456458 G C LDHC Missense_Mutation p.S197T 0.42 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AH-01 11 46419289 46419289 G T AMBRA1 Missense_Mutation p.T1113N 0.51 tolerated_low_confidence(0.2) benign(0.116) TCGA-AR-A1AH-01 11 55321983 55321983 G C OR4C15 Silent p.L67L 0.43 TCGA-AR-A1AH-01 11 64089269 64089269 T G PRDX5 3'UTR 0.30 TCGA-AR-A1AH-01 11 64137029 64137029 G A RPS6KA4 Missense_Mutation p.V514M 0.75 deleterious(0) probably_damaging(0.984) TCGA-AR-A1AH-01 11 64879476 64879476 G T TM7SF2 5'UTR 0.36 TCGA-AR-A1AH-01 11 67766699 67766699 C A UNC93B1 Missense_Mutation p.G211C 0.18 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AH-01 11 7021508 7021508 G A ZNF214 Missense_Mutation p.P469L 0.40 deleterious(0) probably_damaging(1) TCGA-AR-A1AH-01 11 99690446 99690446 A T CNTN5 Missense_Mutation p.Y76F 0.14 tolerated_low_confidence(0.52) benign(0.092) TCGA-AR-A1AH-01 12 109372367 109372367 G T SVOP Missense_Mutation p.T25N 0.45 deleterious(0.05) probably_damaging(0.997) TCGA-AR-A1AH-01 12 109675151 109675151 G A ACACB Missense_Mutation p.R1543H 0.42 deleterious(0) probably_damaging(1) TCGA-AR-A1AH-01 12 112186223 112186223 C A ACAD10 Missense_Mutation p.T894N 0.37 deleterious(0) probably_damaging(0.923) TCGA-AR-A1AH-01 12 129178526 129178526 C T TMEM132C Silent p.D534D 0.34 TCGA-AR-A1AH-01 12 130845772 130845773 - A PIWIL1 Frame_Shift_Ins p.Y574Ifs*63 0.10 TCGA-AR-A1AH-01 12 15673153 15673153 C A PTPRO Missense_Mutation p.P600T 0.71 deleterious(0) probably_damaging(0.992) TCGA-AR-A1AH-01 12 26580852 26580852 T G ITPR2 Silent p.A2313A 0.13 TCGA-AR-A1AH-01 12 27234023 27234023 G A C12orf71 3'UTR 0.29 TCGA-AR-A1AH-01 12 41337453 41337453 T C CNTN1 Silent p.D478D 0.04 TCGA-AR-A1AH-01 12 49362067 49362067 C T WNT10B Missense_Mutation p.A125T 0.72 deleterious(0) probably_damaging(0.996) TCGA-AR-A1AH-01 12 64195961 64195961 G C TMEM5 Missense_Mutation p.K173N 0.03 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AH-01 13 111371953 111371953 G T ING1 Missense_Mutation p.A315S 0.75 tolerated(0.71) benign(0.042) TCGA-AR-A1AH-01 14 74058810 74058810 C T ACOT4 Silent p.H49H 0.50 TCGA-AR-A1AH-01 14 77951026 77951026 A G ISM2 Silent p.D126D 0.73 TCGA-AR-A1AH-01 15 66644500 66644500 A G TIPIN Missense_Mutation p.V60A 0.71 tolerated(0.1) benign(0.076) TCGA-AR-A1AH-01 16 19556209 19556209 G C CCP110 Missense_Mutation p.V859L 0.32 deleterious(0) probably_damaging(0.971) TCGA-AR-A1AH-01 16 2050140 2050140 C A ZNF598 Silent p.P470P 0.54 TCGA-AR-A1AH-01 16 24801817 24801817 C A TNRC6A Missense_Mutation p.N618K 0.43 deleterious(0.01) benign(0.075) TCGA-AR-A1AH-01 16 67263514 67263514 G C FHOD1 3'UTR 0.76 TCGA-AR-A1AH-01 16 85667660 85667667 CTGTCGGC - GSE1 Frame_Shift_Del p.L50Pfs*87 0.81 TCGA-AR-A1AH-01 16 88098920 88098920 C T BANP Silent p.F442F 0.13 TCGA-AR-A1AH-01 17 19452969 19452969 G A SLC47A1 Silent p.T159T 0.70 TCGA-AR-A1AH-01 17 36482383 36482383 T C GPR179 Missense_Mutation p.T2357A 0.10 tolerated_low_confidence(0.3) benign(0.001) TCGA-AR-A1AH-01 17 62034711 62034711 G A SCN4A Silent p.C729C 0.47 TCGA-AR-A1AH-01 17 7579364 7579365 CC - TP53 Frame_Shift_Del p.G108Ffs*40 0.68 TCGA-AR-A1AH-01 17 76423090 76423090 C A DNAH17 Missense_Mutation p.V4253F 0.27 possibly_damaging(0.828) TCGA-AR-A1AH-01 18 13681832 13681832 C G FAM210A Missense_Mutation p.R82P 0.42 tolerated(0.37) benign(0) TCGA-AR-A1AH-01 18 21745043 21745043 C G OSBPL1A Missense_Mutation p.E912D 0.18 tolerated(0.18) benign(0.071) TCGA-AR-A1AH-01 18 31314340 31314340 C T ASXL3 Missense_Mutation p.P348L 0.35 benign(0.446) TCGA-AR-A1AH-01 19 12739378 12739378 A G ZNF791 Silent p.V345V 0.81 TCGA-AR-A1AH-01 19 15917856 15917856 G A OR10H1 3'UTR 0.45 TCGA-AR-A1AH-01 19 16038292 16038292 A T CYP4F11 Silent p.A115A 0.46 TCGA-AR-A1AH-01 19 16212320 16212320 A C TPM4 3'UTR 0.61 TCGA-AR-A1AH-01 19 19381141 19381141 G A TM6SF2 Intron 0.53 TCGA-AR-A1AH-01 19 42813831 42813831 C T PRR19 Missense_Mutation p.A32V 0.14 deleterious(0) benign(0.084) TCGA-AR-A1AH-01 19 43433600 43433600 G T PSG7 Missense_Mutation p.L235I 0.44 tolerated(0.05) benign(0.166) TCGA-AR-A1AH-01 19 44030442 44030444 GGA - ETHE1 In_Frame_Del p.L95del 0.11 TCGA-AR-A1AH-01 19 49869131 49869131 G T DKKL1 Missense_Mutation p.G136C 0.35 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-AR-A1AH-01 19 50713890 50713890 C T MYH14 Nonsense_Mutation p.R90* 0.44 TCGA-AR-A1AH-01 19 57286770 57286770 T C ZIM2 Silent p.R290R 0.32 TCGA-AR-A1AH-01 19 6415313 6415314 - TG KHSRP Splice_Site p.X656_splice 0.36 TCGA-AR-A1AH-01 19 9070668 9070668 G T MUC16 Missense_Mutation p.T5593N 0.43 unknown(0) TCGA-AR-A1AH-01 1 1337585 1337585 G A MRPL20 Missense_Mutation p.P110S 0.22 deleterious(0) probably_damaging(0.993) TCGA-AR-A1AH-01 1 155307359 155307359 C T ASH1L 3'UTR 0.38 TCGA-AR-A1AH-01 1 156622540 156622540 G T BCAN Missense_Mutation p.A600S 0.17 tolerated(0.2) benign(0.075) TCGA-AR-A1AH-01 1 161179917 161179917 T G NDUFS2 Missense_Mutation p.L240R 0.45 deleterious(0) probably_damaging(0.981) TCGA-AR-A1AH-01 1 17418927 17418930 TGTC - PADI2 Frame_Shift_Del p.D210Kfs*72 0.80 TCGA-AR-A1AH-01 1 196800996 196800996 A G CFHR1 Missense_Mutation p.K287R 0.50 deleterious(0) probably_damaging(0.994) TCGA-AR-A1AH-01 1 208216496 208216496 G T PLXNA2 Silent p.R1309R 0.38 TCGA-AR-A1AH-01 1 210857058 210857058 C A KCNH1 Silent p.G845G 0.15 TCGA-AR-A1AH-01 1 216371845 216371845 T G USH2A Missense_Mutation p.Q1298P 0.42 possibly_damaging(0.74) TCGA-AR-A1AH-01 1 225742665 225742665 T C ENAH Missense_Mutation p.N98D 0.44 deleterious(0) unknown(0) TCGA-AR-A1AH-01 1 27240275 27240275 G C NR0B2 Missense_Mutation p.H53D 0.50 deleterious(0.05) benign(0.063) TCGA-AR-A1AH-01 1 3806620 3806620 A C C1orf174 Silent p.S212S 0.32 TCGA-AR-A1AH-01 1 53537273 53537273 C A PODN Missense_Mutation p.L175M 0.04 deleterious(0) probably_damaging(1) TCGA-AR-A1AH-01 20 33577724 33577724 T C MYH7B Splice_Site p.X631_splice 0.38 TCGA-AR-A1AH-01 20 60864362 60864362 C G OSBPL2 Missense_Mutation p.R409G 0.24 deleterious(0) probably_damaging(0.976) TCGA-AR-A1AH-01 21 46380034 46380034 T C FAM207A Silent p.V101V 0.22 TCGA-AR-A1AH-01 2 152507244 152507244 G T NEB Missense_Mutation p.F2357L 0.42 possibly_damaging(0.526) TCGA-AR-A1AH-01 2 15432702 15432702 T A NBAS Silent p.A1662A 0.90 TCGA-AR-A1AH-01 2 170063595 170063595 C A LRP2 Missense_Mutation p.R2212I 0.35 benign(0.008) TCGA-AR-A1AH-01 2 233925287 233925287 C T INPP5D Silent p.S33S 0.44 TCGA-AR-A1AH-01 2 234545725 234545725 C T UGT1A10 Missense_Mutation p.P186L 0.42 deleterious(0.01) benign(0.098) TCGA-AR-A1AH-01 2 25994378 25994378 T C ASXL2 Silent p.P145P 0.51 TCGA-AR-A1AH-01 2 46234725 46234725 G A PRKCE Silent p.R396R 0.19 TCGA-AR-A1AH-01 2 61175203 61175203 G C PUS10 Missense_Mutation p.L476V 0.40 deleterious(0) probably_damaging(0.95) TCGA-AR-A1AH-01 3 130187808 130187808 C T COL6A5 Silent p.Y2320Y 0.71 TCGA-AR-A1AH-01 3 1320096 1320096 G T CNTN6 Splice_Site p.X120_splice 0.44 TCGA-AR-A1AH-01 3 32754743 32754744 - T CNOT10 Frame_Shift_Ins p.L214Ffs*13 0.49 TCGA-AR-A1AH-01 3 38180431 38180431 A T MYD88 Silent p.G93G 0.25 TCGA-AR-A1AH-01 3 38768529 38768529 G T SCN10A Missense_Mutation p.F885L 0.84 deleterious(0) probably_damaging(1) TCGA-AR-A1AH-01 3 51937085 51937085 C G IQCF1 Missense_Mutation p.K8N 0.10 tolerated_low_confidence(0.44) benign(0.198) TCGA-AR-A1AH-01 3 93845211 93845211 C G NSUN3 Missense_Mutation p.H300Q 0.65 tolerated(1) benign(0.001) TCGA-AR-A1AH-01 4 166913988 166913988 C T TLL1 Nonsense_Mutation p.R105* 0.76 TCGA-AR-A1AH-01 4 69536304 69536304 C A UGT2B15 Silent p.L11L 0.70 TCGA-AR-A1AH-01 4 88116737 88116737 T C KLHL8 5'UTR 0.80 TCGA-AR-A1AH-01 5 140230439 140230439 G A PCDHA9 Missense_Mutation p.G787R 0.76 tolerated_low_confidence(0.38) benign(0.001) TCGA-AR-A1AH-01 5 176964948 176964948 G - FAM193B Frame_Shift_Del p.S205Wfs*57 0.50 TCGA-AR-A1AH-01 5 31267600 31267600 T G CDH6 Missense_Mutation p.F7C 0.47 tolerated(0.08) benign(0.436) TCGA-AR-A1AH-01 5 41048471 41048471 C G MROH2B Missense_Mutation p.D547H 0.46 tolerated(0.09) possibly_damaging(0.594) TCGA-AR-A1AH-01 6 109850252 109850252 C T AK9 Missense_Mutation p.A1199T 0.24 deleterious(0.01) benign(0.026) TCGA-AR-A1AH-01 6 133078858 133078858 G C VNN2 Missense_Mutation p.N55K 0.40 tolerated(0.08) probably_damaging(0.981) TCGA-AR-A1AH-01 6 133094058 133094058 G T SLC18B1 Intron 0.25 TCGA-AR-A1AH-01 6 13599264 13599264 G C SIRT5 Silent p.R206R 0.28 TCGA-AR-A1AH-01 6 13977498 13977498 A C RNF182 Missense_Mutation p.K50Q 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-AR-A1AH-01 6 152639373 152639373 C A SYNE1 Missense_Mutation p.C5472F 0.29 benign(0.057) TCGA-AR-A1AH-01 6 152716678 152716678 A T SYNE1 Missense_Mutation p.M2562K 0.18 benign(0.001) TCGA-AR-A1AH-01 6 154412347 154412347 G C OPRM1 Missense_Mutation p.V395L 0.28 deleterious(0.05) probably_damaging(0.938) TCGA-AR-A1AH-01 6 30919364 30919364 T C DPCR1 Silent p.P1041P 0.14 TCGA-AR-A1AH-01 6 37614094 37614094 G T MDGA1 Missense_Mutation p.Q702K 0.35 tolerated(0.3) benign(0.049) TCGA-AR-A1AH-01 6 41903531 41903531 G A CCND3 3'UTR 0.33 TCGA-AR-A1AH-01 6 79944327 79944327 G C HMGN3 5'UTR 0.21 TCGA-AR-A1AH-01 7 100054503 100054503 C T C7orf61 Missense_Mutation p.V165I 0.38 tolerated(1) benign(0.001) TCGA-AR-A1AH-01 7 100238832 100238832 G T TFR2 Missense_Mutation p.S18Y 0.52 deleterious_low_confidence(0.04) benign(0.044) TCGA-AR-A1AH-01 7 105925420 105925420 T C NAMPT 5'UTR 0.35 TCGA-AR-A1AH-01 7 127731927 127731927 C T SND1 Silent p.S887S 0.47 TCGA-AR-A1AH-01 7 143453654 143453654 C A CTAGE6 Missense_Mutation p.L366F 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-AR-A1AH-01 7 158902573 158902573 C T VIPR2 Silent p.R63R 0.31 TCGA-AR-A1AH-01 7 40723677 40723677 G C SUGCT Missense_Mutation p.S378T 0.19 tolerated(0.94) benign(0) TCGA-AR-A1AH-01 7 86522367 86522367 G T KIAA1324L Missense_Mutation p.S912Y 0.48 deleterious(0) benign(0.336) TCGA-AR-A1AH-01 7 86544037 86544037 A G KIAA1324L Splice_Site p.X577_splice 0.44 TCGA-AR-A1AH-01 8 24257811 24257811 G A ADAMDEC1 Silent p.L380L 0.39 TCGA-AR-A1AH-01 8 26721870 26721870 C T ADRA1A Missense_Mutation p.R206H 0.37 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AH-01 8 8560424 8560424 G T CLDN23 Silent p.L172L 0.50 TCGA-AR-A1AH-01 9 116825013 116825013 T A AMBP Missense_Mutation p.Q210L 0.04 tolerated(0.38) benign(0.006) TCGA-AR-A1AH-01 9 125672961 125672961 G A ZBTB6 3'UTR 0.69 TCGA-AR-A1AH-01 9 131105549 131105549 C A SLC27A4 Silent p.I46I 0.77 TCGA-AR-A1AH-01 9 96051807 96051807 G C WNK2 Missense_Mutation p.D1628H 0.67 unknown(0) TCGA-AR-A1AH-01 X 153130155 153130155 G T L1CAM Silent p.I1017I 0.27 TCGA-AR-A1AH-01 X 18822127 18822127 C A PPEF1 Missense_Mutation p.Q395K 0.39 tolerated(0.17) benign(0.063) TCGA-AR-A1AH-01 X 19971133 19971133 T C CXorf23 Silent p.K534K 0.40 TCGA-AR-A1AH-01 X 37986012 37986012 C T SYTL5 3'UTR 0.29 TCGA-AR-A1AH-01 X 38260538 38260538 A G OTC Missense_Mutation p.S133G 0.55 tolerated(0.51) benign(0) TCGA-AR-A1AH-01 X 47489277 47489277 G T CFP 5'UTR 0.41 TCGA-AR-A1AH-01 X 48925975 48925975 C A CCDC120 Intron 0.43 TCGA-AR-A1AH-01 X 82763506 82763506 G T POU3F4 Silent p.V58V 0.32 TCGA-AR-A1AI-01 10 102753350 102753350 G A C10orf2 3'UTR 0.36 TCGA-AR-A1AI-01 10 111647947 111647947 T C XPNPEP1 Missense_Mutation p.Y171C 0.07 tolerated(0.05) benign(0) TCGA-AR-A1AI-01 10 25887210 25887210 C T GPR158 Silent p.L885L 0.10 TCGA-AR-A1AI-01 10 63662061 63662061 G C ARID5B Silent p.A55A 0.39 TCGA-AR-A1AI-01 10 85933587 85933587 G A C10orf99 5'UTR 0.15 TCGA-AR-A1AI-01 11 36597453 36597453 G A RAG1 Missense_Mutation p.D867N 0.12 deleterious_low_confidence(0.02) benign(0.007) TCGA-AR-A1AI-01 12 121747576 121747576 G A ANAPC5 Missense_Mutation p.R662C 0.28 tolerated(0.19) benign(0.009) TCGA-AR-A1AI-01 12 125292354 125292354 C T SCARB1 Missense_Mutation p.C321Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AI-01 12 133197899 133197899 G A P2RX2 Missense_Mutation p.G322R 0.19 deleterious(0.01) probably_damaging(1) TCGA-AR-A1AI-01 13 19999151 19999151 G A TPTE2 Missense_Mutation p.P468S 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-AR-A1AI-01 13 32921032 32921032 C T BRCA2 Missense_Mutation p.R2336C 0.16 tolerated(1) benign(0) TCGA-AR-A1AI-01 14 103371934 103371937 ATTT - TRAF3 Frame_Shift_Del p.H507Rfs*21 0.31 TCGA-AR-A1AI-01 14 106518523 106518523 C A IGHV3-7 Missense_Mutation p.E76D 0.17 tolerated_low_confidence(0.12) benign(0.003) TCGA-AR-A1AI-01 14 23894170 23894170 C A MYH7 Missense_Mutation p.W829C 0.32 deleterious(0) probably_damaging(1) TCGA-AR-A1AI-01 14 30095732 30095732 C G PRKD1 Missense_Mutation p.D586H 0.18 deleterious(0.03) probably_damaging(0.977) TCGA-AR-A1AI-01 15 45392973 45392973 C G DUOX2 Silent p.L995L 0.34 TCGA-AR-A1AI-01 15 51766785 51766785 C G DMXL2 Silent p.V2323V 0.30 TCGA-AR-A1AI-01 16 1400125 1400125 C T TSR3 Missense_Mutation p.E213K 0.28 deleterious(0.01) possibly_damaging(0.904) TCGA-AR-A1AI-01 16 15112739 15112739 C T PDXDC1 Missense_Mutation p.L336F 0.13 deleterious(0) probably_damaging(0.994) TCGA-AR-A1AI-01 16 74334086 74334086 G A PSMD7 Missense_Mutation p.V50I 0.19 tolerated(0.17) benign(0.028) TCGA-AR-A1AI-01 17 41960570 41960570 C A MPP2 Splice_Site p.X101_splice 0.23 TCGA-AR-A1AI-01 17 58275782 58275782 C T USP32 Silent p.L1091L 0.16 TCGA-AR-A1AI-01 17 62043895 62043895 T C SCN4A Missense_Mutation p.Y349C 0.13 deleterious_low_confidence(0) possibly_damaging(0.603) TCGA-AR-A1AI-01 17 7225003 7225003 G A NEURL4 Missense_Mutation p.P992L 0.19 tolerated(0.39) benign(0.002) TCGA-AR-A1AI-01 17 7577130 7577130 A T TP53 Missense_Mutation p.F270I 0.35 deleterious(0) probably_damaging(0.988) TCGA-AR-A1AI-01 17 7796726 7796726 C T CHD3 Missense_Mutation p.A270V 0.22 possibly_damaging(0.499) TCGA-AR-A1AI-01 18 13826448 13826448 G A MC5R Silent p.A228A 0.12 TCGA-AR-A1AI-01 19 14910208 14910208 C A OR7C1 Silent p.V247V 0.24 TCGA-AR-A1AI-01 19 23836780 23836780 T G ZNF675 Missense_Mutation p.K319Q 0.23 deleterious(0.01) possibly_damaging(0.799) TCGA-AR-A1AI-01 19 37619180 37619180 T A ZNF420 Missense_Mutation p.N429K 0.09 tolerated(0.22) possibly_damaging(0.728) TCGA-AR-A1AI-01 19 39208633 39208633 G C ACTN4 Missense_Mutation p.E404Q 0.15 deleterious(0.01) benign(0.077) TCGA-AR-A1AI-01 19 41594877 41594877 C T CYP2A13 Missense_Mutation p.P75L 0.17 tolerated(0.19) possibly_damaging(0.551) TCGA-AR-A1AI-01 19 45909778 45909778 A G CD3EAP 5'UTR 0.25 TCGA-AR-A1AI-01 19 54660722 54660722 G A LENG1 Silent p.G118G 0.10 TCGA-AR-A1AI-01 19 56896091 56896091 C T ZNF582 Missense_Mutation p.C232Y 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-AR-A1AI-01 1 147096091 147096091 C G BCL9 Missense_Mutation p.F1204L 0.24 tolerated(0.09) possibly_damaging(0.858) TCGA-AR-A1AI-01 1 213174228 213174228 C A ANGEL2 Silent p.R387R 0.16 TCGA-AR-A1AI-01 1 228295566 228295566 G A MRPL55 Silent p.L47L 0.12 TCGA-AR-A1AI-01 1 24402671 24402671 G A MYOM3 Silent p.P893P 0.26 TCGA-AR-A1AI-01 1 3383840 3383840 A G ARHGEF16 Missense_Mutation p.D248G 0.10 tolerated(0.12) benign(0.02) TCGA-AR-A1AI-01 1 36636829 36636829 G A MAP7D1 Missense_Mutation p.G102S 0.12 possibly_damaging(0.638) TCGA-AR-A1AI-01 20 23807140 23807140 C T CST2 Missense_Mutation p.S53N 0.05 tolerated(0.05) benign(0.004) TCGA-AR-A1AI-01 20 30534308 30534308 C G PDRG1 Missense_Mutation p.E104Q 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-AR-A1AI-01 20 33586154 33586154 C G MYH7B Missense_Mutation p.I1310M 0.13 possibly_damaging(0.532) TCGA-AR-A1AI-01 22 46654720 46654720 A C PKDREJ Silent p.P1500P 0.30 TCGA-AR-A1AI-01 2 207174888 207174888 C - ZDBF2 Frame_Shift_Del p.A1879Vfs*35 0.13 TCGA-AR-A1AI-01 2 25047329 25047329 C T ADCY3 Missense_Mutation p.R885Q 0.14 deleterious(0) possibly_damaging(0.679) TCGA-AR-A1AI-01 3 101540509 101540509 G A NXPE3 Missense_Mutation p.R464H 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A1AI-01 3 151160895 151160895 G A IGSF10 Missense_Mutation p.S1947F 0.22 deleterious(0) probably_damaging(0.966) TCGA-AR-A1AI-01 3 49896996 49896996 C G CAMKV Missense_Mutation p.A421P 0.10 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-AR-A1AI-01 3 56779405 56779405 C T ARHGEF3 Missense_Mutation p.R265Q 0.21 tolerated(0.07) possibly_damaging(0.805) TCGA-AR-A1AI-01 4 142151378 142151378 T A ZNF330 Missense_Mutation p.F159L 0.14 deleterious(0.04) possibly_damaging(0.454) TCGA-AR-A1AI-01 4 16177795 16177795 C T TAPT1 Missense_Mutation p.V352M 0.23 deleterious(0) probably_damaging(0.985) TCGA-AR-A1AI-01 4 73957689 73957689 G A ANKRD17 Missense_Mutation p.P1886S 0.12 benign(0.041) TCGA-AR-A1AI-01 4 85525478 85525478 G C CDS1 Missense_Mutation p.R67T 0.17 tolerated(0.41) benign(0.001) TCGA-AR-A1AI-01 4 87028500 87028500 G A MAPK10 Missense_Mutation p.A81V 0.15 deleterious(0.01) benign(0.367) TCGA-AR-A1AI-01 4 88977391 88977391 G A PKD2 Missense_Mutation p.D624N 0.08 tolerated(0.27) benign(0.122) TCGA-AR-A1AI-01 5 140699073 140699073 C G TAF7 Missense_Mutation p.R180P 0.12 deleterious(0) possibly_damaging(0.884) TCGA-AR-A1AI-01 5 140711613 140711613 G T PCDHGA1 Missense_Mutation p.Q454H 0.27 tolerated_low_confidence(1) benign(0.002) TCGA-AR-A1AI-01 5 140764296 140764296 G A PCDHGA7 Silent p.K610K 0.14 TCGA-AR-A1AI-01 5 1463930 1463930 C T LPCAT1 Missense_Mutation p.E481K 0.27 tolerated(0.81) benign(0.049) TCGA-AR-A1AI-01 5 19747255 19747255 T C CDH18 Missense_Mutation p.T107A 0.08 deleterious(0) probably_damaging(0.96) TCGA-AR-A1AI-01 5 21755840 21755840 G A CDH12 Missense_Mutation p.T582I 0.07 deleterious(0) probably_damaging(0.983) TCGA-AR-A1AI-01 5 32061224 32061224 G A PDZD2 Missense_Mutation p.R812Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AI-01 5 34925371 34925371 G C BRIX1 Missense_Mutation p.R278T 0.48 tolerated(0.52) benign(0.007) TCGA-AR-A1AI-01 5 79084809 79084809 C G CMYA5 Missense_Mutation p.I3857M 0.16 probably_damaging(0.986) TCGA-AR-A1AI-01 6 101296345 101296345 C T ASCC3 Silent p.R160R 0.07 TCGA-AR-A1AI-01 6 110948277 110948277 C T CDK19 Missense_Mutation p.D240N 0.23 deleterious(0.01) probably_damaging(0.919) TCGA-AR-A1AI-01 6 117252535 117252535 T C RFX6 Missense_Mutation p.C885R 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AR-A1AI-01 6 33410719 33410719 C T SYNGAP1 Missense_Mutation p.P797L 0.19 tolerated(0.16) possibly_damaging(0.652) TCGA-AR-A1AI-01 6 72889564 72889564 G A RIMS1 Missense_Mutation p.G253E 0.15 tolerated(0.27) benign(0.151) TCGA-AR-A1AI-01 6 75893090 75893090 T G COL12A1 Missense_Mutation p.M523L 0.23 probably_damaging(0.941) TCGA-AR-A1AI-01 6 76405579 76405579 C G SENP6 Missense_Mutation p.S712C 0.16 deleterious(0) probably_damaging(0.984) TCGA-AR-A1AI-01 6 84836106 84836106 T A KIAA1009 Missense_Mutation p.E1332D 0.11 deleterious(0.01) possibly_damaging(0.7) TCGA-AR-A1AI-01 6 90576798 90576798 G A CASP8AP2 RNA 0.15 TCGA-AR-A1AI-01 6 97001226 97001226 G C UFL1 Missense_Mutation p.K744N 0.13 deleterious(0.05) benign(0.339) TCGA-AR-A1AI-01 7 129856158 129856158 G A SSMEM1 Missense_Mutation p.E195K 0.12 deleterious(0) possibly_damaging(0.502) TCGA-AR-A1AI-01 7 142045705 142045705 G C TRBV4-2 Missense_Mutation p.S78T 0.26 tolerated(1) benign(0.011) TCGA-AR-A1AI-01 7 148895680 148895680 G A ZNF282 Missense_Mutation p.V141M 0.15 tolerated(0.33) possibly_damaging(0.727) TCGA-AR-A1AI-01 7 94056944 94056944 C A COL1A2 Silent p.P1091P 0.15 TCGA-AR-A1AI-01 7 95668673 95668673 C A DYNC1I1 Missense_Mutation p.D500E 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-AR-A1AI-01 8 12287921 12287921 C T FAM86B2 Missense_Mutation p.E94K 0.07 deleterious(0.03) benign(0.001) TCGA-AR-A1AI-01 8 70980489 70980489 G A PRDM14 Silent p.Y296Y 0.21 TCGA-AR-A1AI-01 8 71581315 71581315 C G LACTB2 Missense_Mutation p.R14P 0.41 deleterious(0) possibly_damaging(0.732) TCGA-AR-A1AI-01 8 99963751 99963751 C T OSR2 Missense_Mutation p.S254F 0.44 deleterious(0) possibly_damaging(0.658) TCGA-AR-A1AI-01 9 77455078 77455078 G A TRPM6 Missense_Mutation p.P136S 0.17 deleterious(0.01) probably_damaging(1) TCGA-AR-A1AI-01 9 86468550 86468550 G A KIF27 Silent p.F1117F 0.18 TCGA-AR-A1AI-01 X 117679333 117679333 A T DOCK11 Missense_Mutation p.D147V 0.27 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AI-01 X 153038815 153038815 G A PLXNB3 Missense_Mutation p.A1036T 0.27 tolerated(0.35) benign(0.008) TCGA-AR-A1AI-01 X 154290173 154290173 G T CMC4 Nonsense_Mutation p.S51* 0.17 TCGA-AR-A1AI-01 X 70618465 70618465 C T TAF1 Nonsense_Mutation p.R1242* 0.09 TCGA-AR-A1AJ-01 10 89624254 89624254 A C PTEN Missense_Mutation p.S10R 0.17 deleterious(0) possibly_damaging(0.882) TCGA-AR-A1AJ-01 11 17191104 17191104 C G PIK3C2A Missense_Mutation p.R62T 0.09 tolerated_low_confidence(0.56) benign(0.016) TCGA-AR-A1AJ-01 11 27149048 27149048 G A BBOX1 3'UTR 0.05 TCGA-AR-A1AJ-01 11 32450119 32450119 C T WT1 Silent p.T231T 0.18 TCGA-AR-A1AJ-01 11 376350 376350 C T B4GALNT4 Silent p.D432D 0.12 TCGA-AR-A1AJ-01 11 60899518 60899518 C G VPS37C Missense_Mutation p.G281A 0.10 tolerated(0.2) benign(0.009) TCGA-AR-A1AJ-01 12 111158824 111158825 - C PPP1CC Intron 0.22 TCGA-AR-A1AJ-01 14 106320472 106320472 G A IGHM Silent p.S446S 0.23 TCGA-AR-A1AJ-01 15 28493757 28493757 C T HERC2 Missense_Mutation p.R1059H 0.17 probably_damaging(0.925) TCGA-AR-A1AJ-01 16 1291281 1291281 C T TPSAB1 Silent p.L63L 0.09 TCGA-AR-A1AJ-01 16 1394995 1394995 C T BAIAP3 Missense_Mutation p.T647M 0.22 tolerated(0.57) probably_damaging(0.99) TCGA-AR-A1AJ-01 16 14951376 14951376 G A NOMO1 Missense_Mutation p.D362N 0.11 tolerated(0.17) possibly_damaging(0.65) TCGA-AR-A1AJ-01 16 24674327 24674327 T C AC012317.1 RNA 0.08 TCGA-AR-A1AJ-01 16 7383011 7383011 G A RBFOX1 Silent p.A3A 0.14 TCGA-AR-A1AJ-01 17 26675063 26675063 G A POLDIP2 3'UTR 0.26 TCGA-AR-A1AJ-01 17 60464771 60464771 A G EFCAB3 Missense_Mutation p.M101V 0.20 tolerated(0.29) benign(0.009) TCGA-AR-A1AJ-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.20 tolerated(0.13) possibly_damaging(0.631) TCGA-AR-A1AJ-01 17 8215645 8215645 C G ARHGEF15 Missense_Mutation p.S96R 0.20 tolerated_low_confidence(0.32) benign(0.001) TCGA-AR-A1AJ-01 18 19371349 19371349 C T MIB1 Missense_Mutation p.P308L 0.15 deleterious(0) benign(0.025) TCGA-AR-A1AJ-01 19 23406559 23406559 T C ZNF724P Missense_Mutation p.H163R 0.21 tolerated(0.07) possibly_damaging(0.599) TCGA-AR-A1AJ-01 19 58470028 58470028 G A C19orf18 Missense_Mutation p.S197L 0.05 tolerated(1) benign(0.023) TCGA-AR-A1AJ-01 1 152282321 152282321 G A FLG Missense_Mutation p.H1681Y 0.10 benign(0.415) TCGA-AR-A1AJ-01 1 155034987 155034987 G A ADAM15 3'UTR 0.13 TCGA-AR-A1AJ-01 1 203316578 203316578 C T FMOD Missense_Mutation p.R274Q 0.04 deleterious(0) probably_damaging(1) TCGA-AR-A1AJ-01 1 21599305 21599305 C T ECE1 Missense_Mutation p.S127N 0.03 tolerated(0.25) benign(0.001) TCGA-AR-A1AJ-01 1 2535380 2535380 G A MMEL1 Silent p.V328V 0.18 TCGA-AR-A1AJ-01 20 35517798 35517798 C T TLDC2 3'UTR 0.17 TCGA-AR-A1AJ-01 20 62065186 62065186 C T KCNQ2 Missense_Mutation p.R365Q 0.21 tolerated(0.32) benign(0.148) TCGA-AR-A1AJ-01 21 45545915 45545915 G A PWP2 Missense_Mutation p.M663I 0.13 tolerated(0.18) benign(0.027) TCGA-AR-A1AJ-01 2 125284942 125284942 G A CNTNAP5 Missense_Mutation p.D519N 0.03 tolerated(0.51) probably_damaging(1) TCGA-AR-A1AJ-01 2 167992554 167992554 C G XIRP2 Missense_Mutation p.H182D 0.10 benign(0.016) TCGA-AR-A1AJ-01 2 17699502 17699502 C T RAD51AP2 Missense_Mutation p.E61K 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-AR-A1AJ-01 2 179665212 179665212 C T TTN Missense_Mutation p.E165K 0.09 TCGA-AR-A1AJ-01 2 73478489 73478489 C T CCT7 Missense_Mutation p.R447C 0.10 deleterious(0) probably_damaging(0.947) TCGA-AR-A1AJ-01 3 123219412 123219412 G A PTPLB Missense_Mutation p.S211F 0.06 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AJ-01 3 49038967 49038967 A C P4HTM Missense_Mutation p.E178A 0.15 tolerated(0.49) possibly_damaging(0.57) TCGA-AR-A1AJ-01 4 122254012 122254012 C T QRFPR Missense_Mutation p.R254Q 0.07 tolerated(1) benign(0.004) TCGA-AR-A1AJ-01 4 184182178 184182178 G A WWC2 Missense_Mutation p.E468K 0.18 deleterious(0) benign(0.443) TCGA-AR-A1AJ-01 5 130940362 130940362 G C RAPGEF6 Missense_Mutation p.L32V 0.05 deleterious(0.03) possibly_damaging(0.521) TCGA-AR-A1AJ-01 5 133478723 133478723 G A TCF7 Missense_Mutation p.E320K 0.09 deleterious(0) probably_damaging(0.953) TCGA-AR-A1AJ-01 5 13735415 13735415 C T DNAH5 Silent p.P3862P 0.11 TCGA-AR-A1AJ-01 5 147504348 147504348 G C SPINK5 Missense_Mutation p.R896T 0.04 deleterious(0) probably_damaging(0.967) TCGA-AR-A1AJ-01 5 95728722 95728722 G C PCSK1 Missense_Mutation p.L749V 0.05 tolerated_low_confidence(0.06) benign(0.097) TCGA-AR-A1AJ-01 6 127652020 127652020 G A ECHDC1 Nonsense_Mutation p.Q58* 0.04 TCGA-AR-A1AJ-01 6 44219919 44219921 AGA - HSP90AB1 In_Frame_Del p.K552del 0.14 TCGA-AR-A1AJ-01 6 84883791 84883791 C G KIAA1009 Missense_Mutation p.E714D 0.08 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AJ-01 7 14378156 14378156 C T DGKB Silent p.L703L 0.05 TCGA-AR-A1AJ-01 7 4091315 4091315 A G SDK1 Missense_Mutation p.T922A 0.14 deleterious(0.01) benign(0.049) TCGA-AR-A1AJ-01 7 75145091 75145091 C T Y_RNA 5'Flank 0.04 TCGA-AR-A1AJ-01 9 139301619 139301619 G C SDCCAG3 Missense_Mutation p.T266R 0.11 deleterious(0) probably_damaging(0.952) TCGA-AR-A1AJ-01 X 100117188 100117188 C T NOX1 Missense_Mutation p.R259H 0.10 tolerated(0.28) benign(0.001) TCGA-AR-A1AJ-01 X 135633088 135633088 A T VGLL1 Intron 0.18 TCGA-AR-A1AJ-01 X 144905594 144905594 G A SLITRK2 Missense_Mutation p.V551I 0.05 tolerated(0.32) possibly_damaging(0.867) TCGA-AR-A1AJ-01 X 151358242 151358242 G A GABRA3 Missense_Mutation p.A368V 0.06 tolerated(0.07) probably_damaging(0.986) TCGA-AR-A1AJ-01 X 27999024 27999024 A T DCAF8L1 Missense_Mutation p.I143N 0.10 deleterious(0) benign(0.163) TCGA-AR-A1AK-01 10 5010513 5010513 G A AKR1C1 Missense_Mutation p.V128M 0.15 tolerated(0.06) benign(0.001) TCGA-AR-A1AK-01 10 75528883 75528883 C T SEC24C Silent p.L799L 0.21 TCGA-AR-A1AK-01 10 75529591 75529591 C G SEC24C Intron 0.23 TCGA-AR-A1AK-01 10 75530080 75530080 C T SEC24C Nonsense_Mutation p.R969* 0.26 TCGA-AR-A1AK-01 10 75530798 75530798 C T SEC24C Missense_Mutation p.S1077F 0.19 deleterious(0) probably_damaging(0.992) TCGA-AR-A1AK-01 10 98744191 98744191 G A C10orf12 Missense_Mutation p.R1015H 0.17 deleterious(0) possibly_damaging(0.884) TCGA-AR-A1AK-01 11 6519529 6519529 C G DNHD1 Silent p.V28V 0.20 TCGA-AR-A1AK-01 11 66617203 66617203 G T PC Nonsense_Mutation p.S1009* 0.13 TCGA-AR-A1AK-01 11 66617412 66617412 G C PC Missense_Mutation p.S965C 0.13 deleterious(0) possibly_damaging(0.897) TCGA-AR-A1AK-01 11 66617429 66617429 G T PC Missense_Mutation p.F959L 0.17 deleterious(0) possibly_damaging(0.613) TCGA-AR-A1AK-01 11 9598152 9598152 G A WEE1 Missense_Mutation p.G322E 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A1AK-01 12 115118757 115118758 - C TBX3 Frame_Shift_Ins p.E195Gfs*32 0.34 TCGA-AR-A1AK-01 12 56663001 56663001 C T COQ10A Missense_Mutation p.S147F 0.23 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AK-01 12 57872994 57872994 G A ARHGAP9 Missense_Mutation p.R66C 0.29 deleterious(0.01) benign(0.024) TCGA-AR-A1AK-01 13 24798398 24798398 C G SPATA13 Missense_Mutation p.S444C 0.20 tolerated_low_confidence(0.07) benign(0.006) TCGA-AR-A1AK-01 13 31897924 31897924 C T B3GALTL Silent p.L407L 0.34 TCGA-AR-A1AK-01 14 24532005 24532005 C T LRRC16B Missense_Mutation p.R886W 0.23 deleterious(0) possibly_damaging(0.739) TCGA-AR-A1AK-01 14 64540727 64540727 C A SYNE2 Missense_Mutation p.T3580N 0.16 benign(0.009) TCGA-AR-A1AK-01 15 25616325 25616325 C G UBE3A Missense_Mutation p.Q335H 0.13 tolerated(0.52) benign(0.003) TCGA-AR-A1AK-01 15 73615867 73615867 G A HCN4 Missense_Mutation p.S856F 0.15 tolerated_low_confidence(0.12) unknown(0) TCGA-AR-A1AK-01 16 19020581 19020581 G A TMC7 Missense_Mutation p.R52K 0.14 tolerated(0.07) benign(0.015) TCGA-AR-A1AK-01 16 28969930 28969930 G C NFATC2IP Intron 0.17 TCGA-AR-A1AK-01 16 30732773 30732773 C T SRCAP Missense_Mutation p.P1173S 0.19 possibly_damaging(0.641) TCGA-AR-A1AK-01 17 12903496 12903496 G A ELAC2 Missense_Mutation p.A467V 0.15 tolerated(1) benign(0.001) TCGA-AR-A1AK-01 17 39728185 39728185 G A KRT9 Silent p.G20G 0.22 TCGA-AR-A1AK-01 17 48070938 48070938 C T DLX3 Silent p.E114E 0.48 TCGA-AR-A1AK-01 17 55038347 55038347 G A COIL Nonsense_Mutation p.Q12* 0.57 TCGA-AR-A1AK-01 17 59556064 59556064 C T TBX4 Missense_Mutation p.S209F 0.08 tolerated(0.07) probably_damaging(0.965) TCGA-AR-A1AK-01 17 74566725 74566725 G A ST6GALNAC2 Missense_Mutation p.S232L 0.19 possibly_damaging(0.892) TCGA-AR-A1AK-01 18 19085428 19085428 C T GREB1L Silent p.I1376I 0.25 TCGA-AR-A1AK-01 19 10114309 10114309 C T COL5A3 Missense_Mutation p.G261R 0.19 unknown(0) TCGA-AR-A1AK-01 19 17017901 17017901 C T CPAMD8 Silent p.A1343A 0.13 TCGA-AR-A1AK-01 19 17945508 17945508 C T JAK3 Missense_Mutation p.R741Q 0.20 tolerated(0.31) benign(0.011) TCGA-AR-A1AK-01 19 36233485 36233485 C A U2AF1L4 3'UTR 0.20 TCGA-AR-A1AK-01 1 117663630 117663630 C G TRIM45 Missense_Mutation p.R65P 0.18 deleterious(0.03) benign(0.007) TCGA-AR-A1AK-01 1 117663869 117663869 C G TRIM45 5'UTR 0.17 TCGA-AR-A1AK-01 1 153954902 153954902 G A RAB13 Missense_Mutation p.R167W 0.14 deleterious(0) possibly_damaging(0.812) TCGA-AR-A1AK-01 1 196871653 196871653 A G CFHR4 Missense_Mutation p.Y54C 0.43 tolerated(0.16) probably_damaging(0.999) TCGA-AR-A1AK-01 1 220089147 220089147 C G SLC30A10 Missense_Mutation p.E368Q 0.15 tolerated(0.1) benign(0.117) TCGA-AR-A1AK-01 1 52822757 52822757 G A CC2D1B Silent p.L604L 0.27 TCGA-AR-A1AK-01 1 70897810 70897810 C T CTH Nonsense_Mutation p.R257* 0.21 TCGA-AR-A1AK-01 20 31573550 31573550 C A SUN5 Missense_Mutation p.V297F 0.13 deleterious(0.01) probably_damaging(0.95) TCGA-AR-A1AK-01 21 43444748 43444748 C G ZNF295-AS1 RNA 0.25 TCGA-AR-A1AK-01 22 21055496 21055496 G A TMEM191A RNA 0.22 TCGA-AR-A1AK-01 22 29191587 29191588 - G XBP1 Frame_Shift_Ins p.F245Lfs*142 0.22 TCGA-AR-A1AK-01 2 109473397 109473397 A T CCDC138 Missense_Mutation p.D555V 0.19 deleterious(0) possibly_damaging(0.904) TCGA-AR-A1AK-01 2 114392640 114392640 C T RABL2A Missense_Mutation p.T77M 0.22 deleterious(0.02) probably_damaging(0.957) TCGA-AR-A1AK-01 2 131704164 131704164 C T ARHGEF4 Missense_Mutation p.T128M 0.23 tolerated(0.21) benign(0.005) TCGA-AR-A1AK-01 2 136107715 136107715 C G ZRANB3 Missense_Mutation p.D144H 0.10 tolerated(0.07) probably_damaging(0.93) TCGA-AR-A1AK-01 2 160714934 160714934 A T LY75-CD302 Missense_Mutation p.F774L 0.20 tolerated(0.31) benign(0.04) TCGA-AR-A1AK-01 2 163044844 163044844 C G FAP Missense_Mutation p.R550T 0.23 tolerated(0.15) benign(0.056) TCGA-AR-A1AK-01 2 179600355 179600355 C A TTN Missense_Mutation p.D4940Y 0.23 TCGA-AR-A1AK-01 2 1926197 1926197 C A MYT1L Missense_Mutation p.M448I 0.21 deleterious(0.03) possibly_damaging(0.835) TCGA-AR-A1AK-01 2 1927033 1927033 C G MYT1L Missense_Mutation p.D170H 0.20 tolerated(0.13) unknown(0) TCGA-AR-A1AK-01 2 220401800 220401800 G T ASIC4 Silent p.L522L 0.13 TCGA-AR-A1AK-01 2 224782704 224782704 C T WDFY1 Missense_Mutation p.R54K 0.22 deleterious(0.04) benign(0.358) TCGA-AR-A1AK-01 3 119327774 119327774 C T PLA1A Missense_Mutation p.L145F 0.27 tolerated(0.32) benign(0.026) TCGA-AR-A1AK-01 3 44636310 44636310 C T ZNF660 Nonsense_Mutation p.Q209* 0.21 TCGA-AR-A1AK-01 3 47450263 47450263 C T PTPN23 Intron 0.40 TCGA-AR-A1AK-01 3 50252845 50252845 C T SLC38A3 RNA 0.19 TCGA-AR-A1AK-01 3 51864469 51864469 G A IQCF3 Silent p.Q39Q 0.21 TCGA-AR-A1AK-01 4 153889196 153889196 G C FHDC1 Missense_Mutation p.E389Q 0.19 deleterious(0.04) possibly_damaging(0.714) TCGA-AR-A1AK-01 4 187530998 187530998 G T FAT1 Missense_Mutation p.T3342K 0.17 benign(0.201) TCGA-AR-A1AK-01 4 467894 467894 G A ZNF721 Intron 0.24 TCGA-AR-A1AK-01 4 57314718 57314718 G T PAICS Silent p.L183L 0.25 TCGA-AR-A1AK-01 5 138117646 138117646 C T CTNNA1 Silent p.F11F 0.20 TCGA-AR-A1AK-01 5 140552846 140552846 G C PCDHB7 Missense_Mutation p.E144Q 0.37 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-AR-A1AK-01 5 14472760 14472760 T C TRIO Missense_Mutation p.V1991A 0.21 benign(0.003) TCGA-AR-A1AK-01 5 43175004 43175004 G A ZNF131 Silent p.R513R 0.35 TCGA-AR-A1AK-01 5 74807730 74807730 G A POLK 5'UTR 0.10 TCGA-AR-A1AK-01 6 106991455 106991455 G C AIM1 Missense_Mutation p.M1266I 0.20 tolerated(0.74) benign(0.04) TCGA-AR-A1AK-01 6 10876743 10876743 G A GCM2 Nonsense_Mutation p.R131* 0.24 TCGA-AR-A1AK-01 6 160968970 160968970 C T LPA Splice_Site p.X1719_splice 0.27 TCGA-AR-A1AK-01 7 116955280 116955280 C T WNT2 Missense_Mutation p.A145T 0.22 tolerated(0.12) benign(0.003) TCGA-AR-A1AK-01 7 30496531 30496531 C G NOD1 Missense_Mutation p.E3Q 0.28 tolerated(0.43) benign(0.007) TCGA-AR-A1AK-01 8 125565583 125565583 G A MTSS1 Missense_Mutation p.R640W 0.16 tolerated(0.19) benign(0.368) TCGA-AR-A1AK-01 8 9619112 9619112 C A TNKS Silent p.I1080I 0.28 TCGA-AR-A1AK-01 9 139379395 139379395 C T C9orf163 Silent p.L165L 0.29 TCGA-AR-A1AK-01 X 129499443 129499443 G A SLC25A14 Intron 0.22 TCGA-AR-A1AK-01 X 153592387 153592387 C A FLNA Intron 0.19 TCGA-AR-A1AK-01 X 43590602 43590602 A G MAOA Missense_Mutation p.I254V 0.15 tolerated(1) benign(0) TCGA-AR-A1AK-01 X 43698178 43698178 G T MAOB Missense_Mutation p.A72D 0.22 deleterious(0) probably_damaging(0.983) TCGA-AR-A1AK-01 X 65427137 65427137 C A HEPH Silent p.R852R 0.25 TCGA-AR-A1AK-01 X 72092263 72092263 T A DMRTC1 3'UTR 0.13 TCGA-AR-A1AL-01 10 105207117 105207117 G A CALHM2 Missense_Mutation p.A255V 0.26 tolerated(0.31) benign(0.231) TCGA-AR-A1AL-01 10 97174350 97174350 C A SORBS1 Silent p.T237T 0.16 TCGA-AR-A1AL-01 11 118425295 118425295 C T IFT46 Missense_Mutation p.R172H 0.18 deleterious(0.01) possibly_damaging(0.857) TCGA-AR-A1AL-01 11 76670183 76670184 - G ACER3 Intron 0.13 TCGA-AR-A1AL-01 12 107372349 107372349 T C MTERFD3 Silent p.T48T 0.17 TCGA-AR-A1AL-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-AR-A1AL-01 13 39587543 39587543 G A PROSER1 Missense_Mutation p.P616S 0.21 tolerated(0.14) possibly_damaging(0.886) TCGA-AR-A1AL-01 15 41227207 41227207 C T DLL4 Missense_Mutation p.R378W 0.21 tolerated(0.19) benign(0.032) TCGA-AR-A1AL-01 15 93588569 93588569 C T RGMA Missense_Mutation p.G346S 0.14 tolerated(0.75) benign(0.002) TCGA-AR-A1AL-01 16 24833445 24833445 G A TNRC6A Missense_Mutation p.V1784I 0.18 deleterious(0) possibly_damaging(0.897) TCGA-AR-A1AL-01 16 53691373 53691373 C G RPGRIP1L Missense_Mutation p.D525H 0.22 deleterious(0) probably_damaging(0.996) TCGA-AR-A1AL-01 16 68849608 68849608 A - CDH1 Frame_Shift_Del p.I505Sfs*17 0.24 TCGA-AR-A1AL-01 18 6837323 6837323 G A ARHGAP28 5'UTR 0.19 TCGA-AR-A1AL-01 19 18546378 18546378 A G ISYNA1 Missense_Mutation p.C417R 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A1AL-01 1 115615557 115615557 T C TSPAN2 Silent p.S47S 0.18 TCGA-AR-A1AL-01 1 207288784 207288784 G C C4BPA Missense_Mutation p.E118Q 0.42 deleterious(0.01) benign(0.122) TCGA-AR-A1AL-01 1 228285614 228285614 G A ARF1 Missense_Mutation p.R149H 0.29 tolerated_low_confidence(0.16) benign(0.001) TCGA-AR-A1AL-01 1 247063726 247063726 T G AHCTF1 Missense_Mutation p.N397T 0.14 deleterious(0.05) probably_damaging(0.92) TCGA-AR-A1AL-01 20 36694652 36694653 AC - RPRD1B Frame_Shift_Del p.K275Nfs*51 0.24 TCGA-AR-A1AL-01 2 191224988 191224988 G A INPP1 Missense_Mutation p.D54N 0.06 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AL-01 2 36808673 36808673 C A FEZ2 Intron 0.29 TCGA-AR-A1AL-01 2 74689879 74689879 T C MOGS Missense_Mutation p.N346S 0.16 tolerated(0.49) benign(0.003) TCGA-AR-A1AL-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-AR-A1AL-01 3 95374099 95374099 C T MTHFD2P1 RNA 0.21 TCGA-AR-A1AL-01 5 102432415 102432415 T A GIN1 Missense_Mutation p.K375I 0.21 deleterious(0) probably_damaging(0.973) TCGA-AR-A1AL-01 5 150844658 150844658 A T SLC36A1 Missense_Mutation p.Y116F 0.03 tolerated(0.14) probably_damaging(0.99) TCGA-AR-A1AL-01 6 12163882 12163882 T C HIVEP1 Missense_Mutation p.S2449P 0.20 tolerated(0.38) benign(0.005) TCGA-AR-A1AL-01 6 90572907 90572907 T C CASP8AP2 RNA 0.24 TCGA-AR-A1AL-01 7 13940377 13940377 C T ETV1 Missense_Mutation p.G400R 0.20 deleterious(0) probably_damaging(0.989) TCGA-AR-A1AL-01 9 130580642 130580642 T C ENG Silent p.P481P 0.27 TCGA-AR-A1AL-01 9 132576329 132576329 G T TOR1A Missense_Mutation p.F307L 0.19 deleterious(0.04) benign(0.174) TCGA-AR-A1AL-01 9 136629098 136629098 C T VAV2 3'UTR 0.26 TCGA-AR-A1AL-01 X 70602701 70602701 G A TAF1 Missense_Mutation p.G606R 0.22 deleterious(0.02) probably_damaging(0.945) TCGA-AR-A1AN-01 10 22217445 22217445 G A DNAJC1 Nonsense_Mutation p.R121* 0.34 TCGA-AR-A1AN-01 11 120180259 120180259 C T POU2F3 Silent p.A346A 0.31 TCGA-AR-A1AN-01 11 64875201 64875201 T G VPS51 Splice_Site p.X169_splice 0.17 TCGA-AR-A1AN-01 11 82561013 82561013 G A PRCP Missense_Mutation p.H253Y 0.25 deleterious(0.03) benign(0) TCGA-AR-A1AN-01 13 50285025 50285025 A G KPNA3 Splice_Site p.X301_splice 0.17 TCGA-AR-A1AN-01 14 89082003 89082003 T C EML5 3'UTR 0.43 TCGA-AR-A1AN-01 16 11361747 11361747 C T TNP2 3'UTR 0.38 TCGA-AR-A1AN-01 16 66842486 66842486 A T NAE1 Missense_Mutation p.I423K 0.05 deleterious(0.01) benign(0.028) TCGA-AR-A1AN-01 16 69832690 69832690 G A WWP2 Missense_Mutation p.R59H 0.35 tolerated(0.58) benign(0.403) TCGA-AR-A1AN-01 17 7579359 7579359 G - TP53 Frame_Shift_Del p.R110Vfs*13 0.27 TCGA-AR-A1AN-01 19 10221623 10221623 C G PPAN Missense_Mutation p.L402V 0.37 deleterious(0) benign(0.124) TCGA-AR-A1AN-01 19 17760329 17760329 C T UNC13A Missense_Mutation p.V503M 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-AR-A1AN-01 19 31770592 31770592 G A TSHZ3 Missense_Mutation p.T36M 0.28 tolerated(0.09) benign(0.022) TCGA-AR-A1AN-01 19 36054519 36054519 C T ATP4A Splice_Site p.X4_splice 0.25 TCGA-AR-A1AN-01 19 56200693 56200693 C T EPN1 Intron 0.07 TCGA-AR-A1AN-01 1 212792849 212792849 G C ATF3 Missense_Mutation p.E166D 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-AR-A1AN-01 1 44458238 44458238 C T CCDC24 Missense_Mutation p.H116Y 0.28 deleterious(0.04) benign(0.094) TCGA-AR-A1AN-01 1 86591291 86591291 C T COL24A1 Missense_Mutation p.R243H 0.30 deleterious(0.05) benign(0.002) TCGA-AR-A1AN-01 21 36252880 36252880 A G RUNX1 Missense_Mutation p.L161P 0.26 deleterious(0) probably_damaging(1) TCGA-AR-A1AN-01 2 130737917 130737917 A G RAB6C Missense_Mutation p.S77G 0.19 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-AR-A1AN-01 5 134670548 134670548 G A H2AFY 3'UTR 0.47 TCGA-AR-A1AN-01 5 178415975 178415975 G A GRM6 Missense_Mutation p.R439W 0.43 deleterious(0) benign(0.035) TCGA-AR-A1AN-01 5 45262056 45262056 G A HCN1 Silent p.D880D 0.23 TCGA-AR-A1AN-01 7 144015463 144015463 G A OR2A1 Silent p.A82A 0.18 TCGA-AR-A1AN-01 9 13224396 13224396 G C MPDZ Missense_Mutation p.Q124E 0.30 tolerated(0.21) benign(0.114) TCGA-AR-A1AN-01 X 114423960 114423960 G A LRCH2 Intron 0.26 TCGA-AR-A1AN-01 X 129189983 129189983 G A BCORL1 Missense_Mutation p.E1670K 0.27 possibly_damaging(0.679) TCGA-AR-A1AN-01 X 153219074 153219074 G A HCFC1 Missense_Mutation p.P1494L 0.26 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-AR-A1AN-01 X 23353314 23353314 G C PTCHD1 Missense_Mutation p.D108H 0.05 tolerated(0.12) probably_damaging(0.987) TCGA-AR-A1AN-01 X 35820757 35820757 G A MAGEB16 Silent p.E148E 0.32 TCGA-AR-A1AN-01 X 54470525 54470525 C G TSR2 Missense_Mutation p.Q117E 0.25 deleterious(0.03) benign(0.007) TCGA-AR-A1AN-01 X 75004102 75004102 G C MAGEE2 Missense_Mutation p.T262R 0.28 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AO-01 10 37447486 37447486 A C ANKRD30A Missense_Mutation p.E568D 0.06 deleterious(0.05) benign(0.064) TCGA-AR-A1AO-01 10 73461806 73461806 G C CDH23 Missense_Mutation p.E401Q 0.05 tolerated(0.11) probably_damaging(0.956) TCGA-AR-A1AO-01 11 118886584 118886584 C T RPS25 Missense_Mutation p.D117N 0.06 deleterious(0.02) benign(0.006) TCGA-AR-A1AO-01 11 299390 299390 C G IFITM5 Missense_Mutation p.R34P 0.06 deleterious(0.02) probably_damaging(0.966) TCGA-AR-A1AO-01 11 3239968 3239968 C G MRGPRG Missense_Mutation p.G26R 0.06 deleterious(0) probably_damaging(0.994) TCGA-AR-A1AO-01 11 62366064 62366064 G A MTA2 Missense_Mutation p.R80C 0.06 deleterious(0) possibly_damaging(0.828) TCGA-AR-A1AO-01 11 75852000 75852000 C G UVRAG Missense_Mutation p.S548C 0.07 deleterious_low_confidence(0.02) benign(0.012) TCGA-AR-A1AO-01 12 112460210 112460210 C G ERP29 Silent p.L180L 0.10 TCGA-AR-A1AO-01 12 123089445 123089445 G C KNTC1 Missense_Mutation p.E1733Q 0.06 tolerated(0.21) benign(0.014) TCGA-AR-A1AO-01 12 56396032 56396032 C T SUOX Silent p.V9V 0.07 TCGA-AR-A1AO-01 12 56396034 56396034 T C SUOX Missense_Mutation p.L10P 0.07 tolerated_low_confidence(0.24) benign(0.002) TCGA-AR-A1AO-01 12 56478854 56478854 G C ERBB3 Missense_Mutation p.V104L 0.04 deleterious(0.03) benign(0.22) TCGA-AR-A1AO-01 13 111134988 111134988 G A COL4A2 Missense_Mutation p.G962S 0.08 possibly_damaging(0.628) TCGA-AR-A1AO-01 13 50092275 50092275 G A PHF11 Missense_Mutation p.R149Q 0.06 tolerated(0.52) benign(0.019) TCGA-AR-A1AO-01 13 52548969 52548969 C G ATP7B Missense_Mutation p.K129N 0.04 tolerated(0.25) possibly_damaging(0.641) TCGA-AR-A1AO-01 13 73320879 73320879 C A BORA Missense_Mutation p.T371K 0.06 tolerated(0.38) benign(0.005) TCGA-AR-A1AO-01 14 100375813 100375813 C T EML1 Silent p.F431F 0.05 TCGA-AR-A1AO-01 14 38060787 38060787 G T FOXA1 Missense_Mutation p.S401Y 0.04 deleterious(0) probably_damaging(0.914) TCGA-AR-A1AO-01 14 64679546 64679546 T C SYNE2 Silent p.I6293I 0.05 TCGA-AR-A1AO-01 14 90754814 90754814 G A NRDE2 Silent p.L969L 0.13 TCGA-AR-A1AO-01 15 34137194 34137194 C A RYR3 Silent p.T4476T 0.06 TCGA-AR-A1AO-01 15 43009984 43009984 C T STARD9 Missense_Mutation p.A4517V 0.05 probably_damaging(0.969) TCGA-AR-A1AO-01 15 54005006 54005006 T C WDR72 Missense_Mutation p.E225G 0.10 deleterious(0.01) benign(0.32) TCGA-AR-A1AO-01 15 65918127 65918127 T G SLC24A1 Missense_Mutation p.I570R 0.12 benign(0.001) TCGA-AR-A1AO-01 15 75015349 75015349 T C CYP1A1 Silent p.R30R 0.15 TCGA-AR-A1AO-01 15 75129763 75129763 C T ULK3 Missense_Mutation p.R450H 0.05 tolerated(0.24) benign(0.001) TCGA-AR-A1AO-01 15 78567879 78567879 G T DNAJA4 Missense_Mutation p.G258V 0.05 deleterious(0) probably_damaging(0.993) TCGA-AR-A1AO-01 16 21716583 21716583 C T OTOA Silent p.H358H 0.07 TCGA-AR-A1AO-01 16 21716592 21716592 C A OTOA Silent p.G361G 0.07 TCGA-AR-A1AO-01 16 3306513 3306513 C G MEFV Missense_Mutation p.K25N 0.07 deleterious(0) probably_damaging(1) TCGA-AR-A1AO-01 16 57775671 57775671 C G KATNB1 Missense_Mutation p.T38R 0.06 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AO-01 16 68721604 68721604 C G CDH3 Nonsense_Mutation p.S587* 0.05 TCGA-AR-A1AO-01 16 81193330 81193330 G C PKD1L2 RNA 0.07 TCGA-AR-A1AO-01 17 57759999 57759999 C A CLTC Missense_Mutation p.R1204S 0.06 deleterious(0) possibly_damaging(0.875) TCGA-AR-A1AO-01 17 66985255 66985255 T G ABCA9 Missense_Mutation p.E1320D 0.06 deleterious(0) probably_damaging(0.996) TCGA-AR-A1AO-01 17 72952025 72952025 T C HID1 Missense_Mutation p.M500V 0.04 deleterious(0) possibly_damaging(0.738) TCGA-AR-A1AO-01 17 74076976 74076976 C A ZACN Intron 0.10 TCGA-AR-A1AO-01 19 14589337 14589343 TCCGGGT - GIPC1 Frame_Shift_Del p.N296Mfs*68 0.12 TCGA-AR-A1AO-01 19 46734253 46734253 G C IGFL1 3'UTR 0.07 TCGA-AR-A1AO-01 19 48945508 48945508 G A GRIN2D Missense_Mutation p.V848I 0.16 deleterious(0) possibly_damaging(0.766) TCGA-AR-A1AO-01 19 54823413 54823413 G A LILRA5 Missense_Mutation p.L44F 0.09 tolerated(0.06) benign(0.058) TCGA-AR-A1AO-01 19 56466268 56466268 C T NLRP8 Silent p.L282L 0.05 TCGA-AR-A1AO-01 19 6754155 6754155 G A SH2D3A Missense_Mutation p.T431M 0.12 deleterious(0.04) possibly_damaging(0.882) TCGA-AR-A1AO-01 1 10490589 10490589 G A APITD1 Silent p.A5A 0.08 TCGA-AR-A1AO-01 1 109289383 109289383 G C STXBP3 Missense_Mutation p.R8S 0.08 tolerated(0.54) benign(0.021) TCGA-AR-A1AO-01 1 150919418 150919418 C T SETDB1 Silent p.F399F 0.07 TCGA-AR-A1AO-01 1 151237998 151237998 G A PSMD4 Silent p.L189L 0.05 TCGA-AR-A1AO-01 1 154517407 154517407 C A TDRD10 Missense_Mutation p.P312T 0.05 deleterious(0) probably_damaging(1) TCGA-AR-A1AO-01 1 158612731 158612731 C T SPTA1 Missense_Mutation p.R1493Q 0.05 tolerated(0.05) benign(0.003) TCGA-AR-A1AO-01 1 1586839 1586839 C G CDK11B Missense_Mutation p.D71H 0.06 probably_damaging(0.984) TCGA-AR-A1AO-01 1 16259936 16259936 G A SPEN Missense_Mutation p.D2401N 0.06 possibly_damaging(0.627) TCGA-AR-A1AO-01 1 167663413 167663413 G A RCSD1 Silent p.S116S 0.03 TCGA-AR-A1AO-01 1 227181945 227181945 G A CDC42BPA 3'UTR 0.13 TCGA-AR-A1AO-01 1 40131888 40131888 G C NT5C1A Silent p.V52V 0.04 TCGA-AR-A1AO-01 1 78044544 78044544 C T ZZZ3 Missense_Mutation p.R698Q 0.05 deleterious(0) possibly_damaging(0.857) TCGA-AR-A1AO-01 1 82408799 82408799 A T LPHN2 Missense_Mutation p.T182S 0.07 tolerated(0.11) possibly_damaging(0.615) TCGA-AR-A1AO-01 20 2816080 2816080 C A PCED1A 3'UTR 0.04 TCGA-AR-A1AO-01 20 32194818 32194818 C T CBFA2T2 Nonsense_Mutation p.Q40* 0.05 TCGA-AR-A1AO-01 21 22849643 22849643 A C NCAM2 Missense_Mutation p.K643T 0.06 tolerated(0.08) possibly_damaging(0.854) TCGA-AR-A1AO-01 21 30445843 30445843 A G CCT8 Intron 0.03 TCGA-AR-A1AO-01 21 47545189 47545189 G A COL6A2 Missense_Mutation p.V594I 0.07 tolerated(0.36) probably_damaging(0.918) TCGA-AR-A1AO-01 22 32108436 32108436 G C PRR14L Missense_Mutation p.P1797A 0.09 tolerated(0.62) benign(0.269) TCGA-AR-A1AO-01 22 37425453 37425453 C A MPST Nonsense_Mutation p.C284* 0.05 TCGA-AR-A1AO-01 2 128342465 128342465 G T MYO7B Missense_Mutation p.G556V 0.05 deleterious(0) probably_damaging(1) TCGA-AR-A1AO-01 2 131103976 131103976 G C IMP4 Missense_Mutation p.V271L 0.05 tolerated(0.23) benign(0.046) TCGA-AR-A1AO-01 2 137814264 137814264 G A THSD7B Silent p.L138L 0.10 TCGA-AR-A1AO-01 2 168108088 168108088 G C XIRP2 Missense_Mutation p.E3396Q 0.04 possibly_damaging(0.687) TCGA-AR-A1AO-01 2 170003441 170003441 C G LRP2 Missense_Mutation p.E4207Q 0.07 benign(0.034) TCGA-AR-A1AO-01 2 182981978 182981978 G A PPP1R1C Missense_Mutation p.E103K 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-AR-A1AO-01 2 220336975 220336975 G A SPEG Missense_Mutation p.A1288T 0.08 benign(0.18) TCGA-AR-A1AO-01 2 26427023 26427023 G C HADHA Missense_Mutation p.I376M 0.04 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AO-01 2 27560804 27560804 G T GTF3C2 Silent p.L313L 0.05 TCGA-AR-A1AO-01 2 27884060 27884060 A T SUPT7L Silent p.I70I 0.06 TCGA-AR-A1AO-01 2 45826834 45826834 T G SRBD1 Missense_Mutation p.K134N 0.07 tolerated_low_confidence(0.09) benign(0.012) TCGA-AR-A1AO-01 3 111394116 111394116 G T PLCXD2 Missense_Mutation p.R8S 0.09 tolerated_low_confidence(0.06) benign(0.011) TCGA-AR-A1AO-01 3 123359262 123359262 G A MYLK Missense_Mutation p.S1570L 0.05 tolerated(0.32) benign(0.012) TCGA-AR-A1AO-01 3 130150403 130150403 C G COL6A5 Missense_Mutation p.I1781M 0.10 tolerated(0.43) benign(0.065) TCGA-AR-A1AO-01 3 141499421 141499421 G A GRK7 Missense_Mutation p.G273E 0.06 deleterious(0) probably_damaging(1) TCGA-AR-A1AO-01 3 157081420 157081420 C G VEPH1 Missense_Mutation p.D490H 0.05 deleterious(0.01) benign(0.238) TCGA-AR-A1AO-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.09 deleterious(0.04) probably_damaging(0.96) TCGA-AR-A1AO-01 3 182554244 182554244 G A ATP11B Missense_Mutation p.E180K 0.08 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AO-01 3 194366937 194366937 C T LSG1 Missense_Mutation p.D527N 0.05 deleterious(0) possibly_damaging(0.601) TCGA-AR-A1AO-01 3 5252864 5252864 G C EDEM1 Missense_Mutation p.S548T 0.06 deleterious(0) probably_damaging(1) TCGA-AR-A1AO-01 3 63982003 63982003 G A ATXN7 Silent p.K835K 0.06 TCGA-AR-A1AO-01 4 100534287 100534287 A G MTTP Missense_Mutation p.D736G 0.06 deleterious(0) probably_damaging(0.984) TCGA-AR-A1AO-01 4 122803569 122803569 G C TRPC3 Missense_Mutation p.L855V 0.06 deleterious(0.02) probably_damaging(0.986) TCGA-AR-A1AO-01 4 167022174 167022174 A T TLL1 3'UTR 0.11 TCGA-AR-A1AO-01 5 156917416 156917416 C T ADAM19 Silent p.L714L 0.06 TCGA-AR-A1AO-01 5 179763533 179763534 TG - GFPT2 Frame_Shift_Del p.I54Sfs*14 0.10 TCGA-AR-A1AO-01 5 42807048 42807048 A C SEPP1 Missense_Mutation p.D122E 0.04 deleterious(0.01) probably_damaging(0.921) TCGA-AR-A1AO-01 5 52214602 52214602 G A ITGA1 Missense_Mutation p.E677K 0.04 tolerated(0.64) benign(0.155) TCGA-AR-A1AO-01 5 66432414 66432414 G A MAST4 Missense_Mutation p.D806N 0.08 probably_damaging(0.954) TCGA-AR-A1AO-01 5 70805580 70805580 G C BDP1 Missense_Mutation p.K887N 0.05 tolerated(0.13) benign(0.136) TCGA-AR-A1AO-01 5 79617018 79617018 C A SPZ1 Nonsense_Mutation p.C328* 0.10 TCGA-AR-A1AO-01 6 138753166 138753166 G C NHSL1 Silent p.V776V 0.07 TCGA-AR-A1AO-01 6 143091393 143091393 G T HIVEP2 Missense_Mutation p.L1495M 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-AR-A1AO-01 6 165827022 165827022 G A PDE10A Silent p.A415A 0.07 TCGA-AR-A1AO-01 6 17629065 17629065 G T NUP153 Missense_Mutation p.A1122D 0.08 deleterious(0.01) benign(0.424) TCGA-AR-A1AO-01 7 100684574 100684574 G C MUC17 Missense_Mutation p.V3293L 0.09 benign(0.413) TCGA-AR-A1AO-01 7 111638505 111638505 T A DOCK4 Missense_Mutation p.K72N 0.04 tolerated(0.14) benign(0.206) TCGA-AR-A1AO-01 7 149516485 149516485 G A SSPO RNA 0.14 TCGA-AR-A1AO-01 7 26225174 26225175 CT - NFE2L3 Frame_Shift_Del p.L620* 0.10 TCGA-AR-A1AO-01 7 86394777 86394777 T G GRM3 Missense_Mutation p.L106V 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A1AO-01 7 86416323 86416323 C G GRM3 Missense_Mutation p.H405Q 0.04 deleterious(0.02) probably_damaging(0.969) TCGA-AR-A1AO-01 8 110530399 110530399 A T PKHD1L1 Missense_Mutation p.Q3898L 0.05 deleterious(0) benign(0.07) TCGA-AR-A1AO-01 8 113518941 113518941 A G CSMD3 Missense_Mutation p.V1625A 0.05 deleterious(0) probably_damaging(0.968) TCGA-AR-A1AO-01 8 145059135 145059135 C G PARP10 Missense_Mutation p.Q345H 0.05 deleterious(0.03) benign(0.162) TCGA-AR-A1AO-01 8 23147863 23147863 G T R3HCC1 Missense_Mutation p.G58W 0.05 deleterious(0) probably_damaging(0.982) TCGA-AR-A1AO-01 8 66989063 66989063 C T DNAJC5B Silent p.D96D 0.09 TCGA-AR-A1AO-01 9 107289131 107289131 A G OR13C4 Silent p.F120F 0.05 TCGA-AR-A1AO-01 9 115946074 115946074 C G FKBP15 Missense_Mutation p.E590Q 0.10 deleterious(0.04) possibly_damaging(0.873) TCGA-AR-A1AO-01 9 116018411 116018411 C T SLC31A1 5'UTR 0.07 TCGA-AR-A1AO-01 9 117120377 117120377 T G AKNA Missense_Mutation p.M855L 0.08 tolerated(1) benign(0) TCGA-AR-A1AO-01 9 131671232 131671232 G C LRRC8A Missense_Mutation p.E597Q 0.09 deleterious(0) benign(0.008) TCGA-AR-A1AO-01 9 37861499 37861499 G C DCAF10 Missense_Mutation p.K558N 0.04 tolerated(0.09) benign(0.13) TCGA-AR-A1AO-01 9 86593130 86593130 G C HNRNPK Missense_Mutation p.T13S 0.04 tolerated_low_confidence(0.09) benign(0.16) TCGA-AR-A1AO-01 9 87563481 87563481 C G NTRK2 Missense_Mutation p.C623W 0.03 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AO-01 9 96429502 96429502 G C PHF2 Silent p.A776A 0.08 TCGA-AR-A1AO-01 X 110644499 110644499 C T DCX Missense_Mutation p.V223I 0.09 tolerated(0.12) benign(0.034) TCGA-AR-A1AO-01 X 153578098 153578098 C A FLNA Missense_Mutation p.A2491S 0.09 deleterious(0.04) benign(0.391) TCGA-AR-A1AO-01 X 23953370 23953370 C A CXorf58 Missense_Mutation p.R205S 0.04 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AO-01 X 48652406 48652406 T C GATA1 Silent p.G359G 0.04 TCGA-AR-A1AO-01 X 53657917 53657917 G A HUWE1 Nonsense_Mutation p.Q278* 0.09 TCGA-AR-A1AO-01 X 5821807 5821807 G A NLGN4X Silent p.V304V 0.04 TCGA-AR-A1AO-01 X 99663125 99663125 G A PCDH19 Silent p.D157D 0.08 TCGA-AR-A1AP-01 10 102777873 102777873 C T PDZD7 Missense_Mutation p.R502H 0.31 tolerated_low_confidence(0.35) benign(0.002) TCGA-AR-A1AP-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.28 TCGA-AR-A1AP-01 11 67066581 67066581 G A ANKRD13D Missense_Mutation p.G262S 0.35 deleterious(0.01) possibly_damaging(0.749) TCGA-AR-A1AP-01 11 76829260 76829260 C G CAPN5 Missense_Mutation p.I343M 0.09 tolerated(0.18) benign(0.123) TCGA-AR-A1AP-01 12 11546473 11546473 G A PRB2 Missense_Mutation p.P180L 0.32 deleterious(0.05) unknown(0) TCGA-AR-A1AP-01 12 57913024 57913024 G C DDIT3 Intron 0.33 TCGA-AR-A1AP-01 12 70970394 70970394 G T PTPRB Missense_Mutation p.N870K 0.39 tolerated(0.1) benign(0.03) TCGA-AR-A1AP-01 12 88496844 88496844 C T CEP290 Intron 0.53 TCGA-AR-A1AP-01 13 110826988 110826988 C T COL4A1 Missense_Mutation p.G1103R 0.34 probably_damaging(1) TCGA-AR-A1AP-01 14 23314527 23314527 G A MMP14 Missense_Mutation p.E457K 0.31 tolerated(1) benign(0.083) TCGA-AR-A1AP-01 14 58605863 58605863 C T C14orf37 Missense_Mutation p.E72K 0.50 deleterious(0.02) possibly_damaging(0.486) TCGA-AR-A1AP-01 17 33689955 33689955 C T SLFN11 Missense_Mutation p.R291H 0.52 tolerated(0.62) benign(0) TCGA-AR-A1AP-01 17 34304539 34304539 C T CCL16 3'UTR 0.23 TCGA-AR-A1AP-01 17 40257115 40257115 G A DHX58 Missense_Mutation p.A441V 0.62 deleterious(0.01) possibly_damaging(0.573) TCGA-AR-A1AP-01 17 56355208 56355208 C T MPO Missense_Mutation p.R395H 0.34 tolerated(0.08) benign(0.416) TCGA-AR-A1AP-01 17 61972940 61972940 G A CSH1 Missense_Mutation p.R117W 0.27 deleterious(0) benign(0.005) TCGA-AR-A1AP-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.66 TCGA-AR-A1AP-01 19 30505832 30505832 A G URI1 Silent p.S488S 0.34 TCGA-AR-A1AP-01 19 39098654 39098654 C T MAP4K1 Missense_Mutation p.R362Q 0.39 tolerated(0.59) benign(0.015) TCGA-AR-A1AP-01 19 52249151 52249151 C T FPR1 3'UTR 0.40 TCGA-AR-A1AP-01 19 56954014 56954014 T A ZNF667 Missense_Mutation p.K117I 0.42 deleterious(0.03) benign(0.128) TCGA-AR-A1AP-01 19 57022883 57022883 C T ZNF471 Intron 0.38 TCGA-AR-A1AP-01 1 152285017 152285017 C T FLG Missense_Mutation p.R782Q 0.45 benign(0.059) TCGA-AR-A1AP-01 1 155162665 155162665 G A MUC1 5'UTR 0.23 TCGA-AR-A1AP-01 1 179079801 179079801 T G ABL2 Intron 0.25 TCGA-AR-A1AP-01 1 196621079 196621079 G T CFH 5'UTR 0.46 TCGA-AR-A1AP-01 20 20150064 20150064 G A C20orf26 Missense_Mutation p.E449K 0.46 tolerated(0.72) benign(0.08) TCGA-AR-A1AP-01 20 42683009 42683009 A T TOX2 Missense_Mutation p.K241M 0.26 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AP-01 2 11752468 11752468 T G GREB1 Intron 0.30 TCGA-AR-A1AP-01 2 167330310 167330310 C G SCN7A Missense_Mutation p.E148Q 0.40 tolerated(0.14) benign(0.016) TCGA-AR-A1AP-01 2 175612764 175612764 G A CHRNA1 3'UTR 0.35 TCGA-AR-A1AP-01 2 193044277 193044277 T C TMEFF2 Intron 0.10 TCGA-AR-A1AP-01 3 100378672 100378672 A G GPR128 Missense_Mutation p.N655S 0.39 tolerated(0.06) benign(0.372) TCGA-AR-A1AP-01 3 108335487 108335487 C G DZIP3 Missense_Mutation p.Q120E 0.37 deleterious(0.04) probably_damaging(0.977) TCGA-AR-A1AP-01 3 195000049 195000049 A T ACAP2 3'UTR 0.30 TCGA-AR-A1AP-01 3 30729932 30729932 G A TGFBR2 Missense_Mutation p.E510K 0.36 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AP-01 3 33135082 33135082 G C TMPPE Silent p.A202A 0.16 TCGA-AR-A1AP-01 3 52326415 52326415 G A GLYCTK Missense_Mutation p.R282H 0.36 deleterious(0.04) benign(0.033) TCGA-AR-A1AP-01 3 93733513 93733513 C T STX19 Missense_Mutation p.E201K 0.34 deleterious(0.01) possibly_damaging(0.905) TCGA-AR-A1AP-01 4 155471517 155471517 A C PLRG1 5'UTR 0.48 TCGA-AR-A1AP-01 4 169137918 169137918 T G DDX60 3'UTR 0.39 TCGA-AR-A1AP-01 4 183713590 183713590 C T TENM3 Missense_Mutation p.A1922V 0.32 tolerated(0.08) possibly_damaging(0.739) TCGA-AR-A1AP-01 4 186188240 186188240 C T SNX25 Missense_Mutation p.A177V 0.32 deleterious(0) possibly_damaging(0.682) TCGA-AR-A1AP-01 4 37446793 37446793 C G KIAA1239 Missense_Mutation p.I1061M 0.31 deleterious(0.02) probably_damaging(0.976) TCGA-AR-A1AP-01 6 137540478 137540478 G A IFNGR1 5'UTR 0.58 TCGA-AR-A1AP-01 6 155761188 155761188 C T NOX3 Silent p.S190S 0.34 TCGA-AR-A1AP-01 7 116340308 116340308 C T MET Silent p.Y390Y 0.27 TCGA-AR-A1AP-01 7 127950667 127950667 C A RBM28 3'UTR 0.26 TCGA-AR-A1AP-01 7 86537023 86537023 G A KIAA1324L Missense_Mutation p.P841S 0.31 deleterious(0) possibly_damaging(0.714) TCGA-AR-A1AP-01 8 133882025 133882025 C T TG Silent p.N76N 0.26 TCGA-AR-A1AP-01 X 23803899 23803899 C A SAT1 Missense_Mutation p.L148M 0.17 deleterious(0.01) probably_damaging(0.962) TCGA-AR-A1AP-01 X 26211935 26211935 C T MAGEB6 5'UTR 0.53 TCGA-AR-A1AQ-01 10 34400454 34400454 G C PARD3 Missense_Mutation p.D1238E 0.13 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-AR-A1AQ-01 11 105948464 105948464 C G AASDHPPT Missense_Mutation p.C9W 0.23 deleterious_low_confidence(0.01) benign(0.103) TCGA-AR-A1AQ-01 11 17498260 17498260 G A ABCC8 Missense_Mutation p.L22F 0.16 tolerated(0.06) benign(0.088) TCGA-AR-A1AQ-01 11 27742965 27742965 G A RP11-587D21.4 Intron 0.23 TCGA-AR-A1AQ-01 11 4091418 4091418 A G STIM1 Missense_Mutation p.H259R 0.23 tolerated(0.5) probably_damaging(0.987) TCGA-AR-A1AQ-01 11 74203306 74203306 T G LIPT2 Silent p.T190T 0.18 TCGA-AR-A1AQ-01 12 48380623 48380623 C T COL2A1 Missense_Mutation p.E472K 0.04 possibly_damaging(0.68) TCGA-AR-A1AQ-01 12 7048007 7048007 C T ATN1 Missense_Mutation p.H961Y 0.26 probably_damaging(0.968) TCGA-AR-A1AQ-01 13 28896410 28896410 A G FLT1 Missense_Mutation p.S1014P 0.55 deleterious(0) probably_damaging(0.982) TCGA-AR-A1AQ-01 13 48934189 48934189 C G RB1 Nonsense_Mutation p.S215* 0.45 TCGA-AR-A1AQ-01 14 96779679 96779679 C A ATG2B Missense_Mutation p.A1246S 0.32 tolerated(0.21) probably_damaging(0.982) TCGA-AR-A1AQ-01 15 55681620 55681620 C G CCPG1 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.995) TCGA-AR-A1AQ-01 16 69972999 69972999 C - WWP2 Frame_Shift_Del p.V806Sfs*48 0.51 TCGA-AR-A1AQ-01 17 18155040 18155040 A C FLII Missense_Mutation p.L446R 0.30 deleterious(0) probably_damaging(0.993) TCGA-AR-A1AQ-01 17 27401792 27401792 G A MYO18A Missense_Mutation p.A2054V 0.33 deleterious_low_confidence(0.01) benign(0.154) TCGA-AR-A1AQ-01 17 7574003 7574003 G - TP53 Frame_Shift_Del p.R342Efs*3 0.22 TCGA-AR-A1AQ-01 18 19102675 19102675 C T GREB1L Missense_Mutation p.R1889C 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A1AQ-01 18 50985621 50985621 G A DCC Missense_Mutation p.A1138T 0.20 tolerated(0.2) benign(0.001) TCGA-AR-A1AQ-01 18 56412996 56412996 C A MALT1 Silent p.T670T 0.05 TCGA-AR-A1AQ-01 19 10334727 10334727 G A S1PR2 Silent p.P285P 0.22 TCGA-AR-A1AQ-01 19 11242037 11242043 CCTCGCC - LDLR 3'UTR 0.25 TCGA-AR-A1AQ-01 19 16918910 16918910 T C NWD1 Missense_Mutation p.L1417P 0.11 deleterious(0) probably_damaging(0.99) TCGA-AR-A1AQ-01 19 3643289 3643289 G A PIP5K1C Missense_Mutation p.S534F 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.836) TCGA-AR-A1AQ-01 19 9074465 9074465 G A MUC16 Silent p.V4327V 0.26 TCGA-AR-A1AQ-01 1 100614480 100614480 T - LRRC39 3'UTR 0.09 TCGA-AR-A1AQ-01 1 158615165 158615165 G A SPTA1 Missense_Mutation p.A1336V 0.32 tolerated(0.09) benign(0.026) TCGA-AR-A1AQ-01 1 161337629 161337630 - A C1orf192 Intron 0.22 TCGA-AR-A1AQ-01 1 242287770 242287770 C T PLD5 Silent p.S311S 0.22 TCGA-AR-A1AQ-01 1 44413299 44413299 G T IPO13 Silent p.G9G 0.17 TCGA-AR-A1AQ-01 1 46746855 46746855 A - LRRC41 Frame_Shift_Del p.G567Vfs*12 0.20 TCGA-AR-A1AQ-01 20 47296244 47296244 C T PREX1 Missense_Mutation p.R495H 0.20 deleterious(0.03) possibly_damaging(0.893) TCGA-AR-A1AQ-01 21 30699407 30699407 C T BACH1 Missense_Mutation p.A421V 0.25 tolerated(0.33) possibly_damaging(0.474) TCGA-AR-A1AQ-01 22 17468927 17468927 C T GAB4 Silent p.P203P 0.23 TCGA-AR-A1AQ-01 2 166618455 166618455 T C GALNT3 Silent p.T266T 0.44 TCGA-AR-A1AQ-01 2 176973668 176973668 C A HOXD11 Missense_Mutation p.P272H 0.16 deleterious(0) probably_damaging(1) TCGA-AR-A1AQ-01 2 196749476 196749476 G A DNAH7 Nonsense_Mutation p.R1866* 0.45 TCGA-AR-A1AQ-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.38 TCGA-AR-A1AQ-01 2 7179763 7179763 G A RNF144A Missense_Mutation p.V251M 0.43 deleterious(0) possibly_damaging(0.897) TCGA-AR-A1AQ-01 3 153993986 153993986 G A DHX36 Nonsense_Mutation p.R1001* 0.07 TCGA-AR-A1AQ-01 5 131046309 131046309 C A FNIP1 Missense_Mutation p.G223V 0.33 deleterious(0.03) probably_damaging(1) TCGA-AR-A1AQ-01 6 34506131 34506131 G A SPDEF Missense_Mutation p.R310C 0.40 deleterious(0) probably_damaging(1) TCGA-AR-A1AQ-01 6 41029366 41029367 - CC APOBEC2 Frame_Shift_Ins p.L145Pfs*23 0.16 TCGA-AR-A1AQ-01 6 42906359 42906359 G C CNPY3 Missense_Mutation p.G223R 0.14 tolerated(0.23) benign(0.36) TCGA-AR-A1AQ-01 6 43166502 43166502 C T CUL9 Missense_Mutation p.R987C 0.26 tolerated(0.09) benign(0.002) TCGA-AR-A1AQ-01 7 83823815 83823815 G C SEMA3A Missense_Mutation p.P30A 0.23 deleterious(0) benign(0.096) TCGA-AR-A1AQ-01 8 124031520 124031520 G C DERL1 Missense_Mutation p.L178V 0.03 tolerated(0.14) benign(0.199) TCGA-AR-A1AQ-01 8 133142049 133142049 C T KCNQ3 Silent p.P693P 0.54 TCGA-AR-A1AQ-01 8 144687767 144687767 G T PYCRL 3'UTR 0.22 TCGA-AR-A1AQ-01 9 34552057 34552057 G A CNTFR 3'UTR 0.24 TCGA-AR-A1AQ-01 X 119389284 119389285 - TA ZBTB33 Frame_Shift_Ins p.Y672Lfs*6 0.17 TCGA-AR-A1AR-01 10 67726394 67726396 CAG TCAT CTNNA3 Frame_Shift_Ins p.L792Mfs*69 0.20 TCGA-AR-A1AR-01 11 5013497 5013497 C A MMP26 3'UTR 0.28 TCGA-AR-A1AR-01 11 55587494 55587494 C T OR5D18 Missense_Mutation p.P130L 0.21 deleterious(0) probably_damaging(0.977) TCGA-AR-A1AR-01 11 56043937 56043937 A C OR5T1 Missense_Mutation p.S275R 0.05 deleterious(0.02) benign(0.337) TCGA-AR-A1AR-01 11 65647294 65647301 CCTGCCTC - CTSW 5'UTR 0.20 TCGA-AR-A1AR-01 12 40745430 40745430 T G LRRK2 Silent p.A2157A 0.39 TCGA-AR-A1AR-01 12 9985925 9985925 C T KLRF1 Nonsense_Mutation p.Q71* 0.33 TCGA-AR-A1AR-01 13 103396384 103396384 A - LINC00283 RNA 0.32 TCGA-AR-A1AR-01 14 101509363 101509363 C T MIR1185-1 RNA 0.21 TCGA-AR-A1AR-01 14 104484481 104484481 T C TDRD9 Missense_Mutation p.L795P 0.28 deleterious(0) probably_damaging(0.971) TCGA-AR-A1AR-01 14 105683986 105683986 C T BRF1 Missense_Mutation p.R556K 0.35 tolerated(0.6) benign(0.001) TCGA-AR-A1AR-01 14 24113663 24113663 A G DHRS2 Missense_Mutation p.T196A 0.42 deleterious(0.03) possibly_damaging(0.831) TCGA-AR-A1AR-01 14 47324336 47324336 C T MDGA2 Missense_Mutation p.R925H 0.22 deleterious(0.02) possibly_damaging(0.897) TCGA-AR-A1AR-01 16 4947726 4947726 G A PPL Silent p.L308L 0.30 TCGA-AR-A1AR-01 16 71417313 71417313 A T CALB2 Missense_Mutation p.D148V 0.33 deleterious(0.02) possibly_damaging(0.733) TCGA-AR-A1AR-01 17 34312816 34312816 G A CCL14 Missense_Mutation p.P32L 0.04 deleterious(0.01) benign(0) TCGA-AR-A1AR-01 17 4857133 4857133 C T ENO3 Missense_Mutation p.P146L 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-AR-A1AR-01 17 74017827 74017827 C A EVPL Missense_Mutation p.Q281H 0.39 deleterious(0.02) possibly_damaging(0.625) TCGA-AR-A1AR-01 17 7579419 7579419 A - TP53 Frame_Shift_Del p.S90Pfs*33 0.26 TCGA-AR-A1AR-01 19 45991899 45991899 A T RTN2 Silent p.I482I 0.26 TCGA-AR-A1AR-01 19 53612856 53612856 G A ZNF415 Missense_Mutation p.H148Y 0.28 deleterious(0) benign(0) TCGA-AR-A1AR-01 19 54937907 54937907 C T TTYH1 Silent p.L232L 0.23 TCGA-AR-A1AR-01 19 8601262 8601262 G A MYO1F Silent p.P639P 0.17 TCGA-AR-A1AR-01 1 145530929 145530929 G A ITGA10 Missense_Mutation p.D221N 0.22 deleterious(0.04) possibly_damaging(0.599) TCGA-AR-A1AR-01 1 152286025 152286025 C G FLG Missense_Mutation p.R446T 0.10 possibly_damaging(0.476) TCGA-AR-A1AR-01 1 165875164 165875164 A T UCK2 Nonsense_Mutation p.K202* 0.16 TCGA-AR-A1AR-01 1 180243387 180243387 C T LHX4 Silent p.G282G 0.23 TCGA-AR-A1AR-01 1 214803928 214803928 C A CENPF Missense_Mutation p.Q416K 0.21 probably_damaging(0.979) TCGA-AR-A1AR-01 1 231403518 231403518 T G GNPAT Missense_Mutation p.L383W 0.17 deleterious(0) probably_damaging(0.996) TCGA-AR-A1AR-01 1 247902857 247902857 G C OR14K1 Missense_Mutation p.R314T 0.26 deleterious(0.01) benign(0.038) TCGA-AR-A1AR-01 1 34663500 34663500 G A C1orf94 Missense_Mutation p.R332K 0.26 tolerated(0.17) benign(0.108) TCGA-AR-A1AR-01 22 26875371 26875371 G C HPS4 Intron 0.35 TCGA-AR-A1AR-01 22 50705223 50705223 C T MAPK11 Intron 0.38 TCGA-AR-A1AR-01 2 160181323 160181323 G A BAZ2B Nonsense_Mutation p.Q2118* 0.17 TCGA-AR-A1AR-01 2 220072393 220072393 T C ZFAND2B Silent p.P58P 0.28 TCGA-AR-A1AR-01 2 234652278 234652278 G T UGT1A10 Intron 0.20 TCGA-AR-A1AR-01 2 25016138 25016138 G T PTRHD1 Missense_Mutation p.Q37K 0.33 tolerated(1) benign(0.003) TCGA-AR-A1AR-01 2 33824320 33824320 A C FAM98A 5'UTR 0.25 TCGA-AR-A1AR-01 2 49190072 49190072 T C FSHR Missense_Mutation p.T630A 0.27 deleterious(0) probably_damaging(0.996) TCGA-AR-A1AR-01 2 74719297 74719297 C G TTC31 Missense_Mutation p.F320L 0.30 tolerated(0.43) possibly_damaging(0.485) TCGA-AR-A1AR-01 2 97338872 97338872 T G FER1L5 RNA 0.23 TCGA-AR-A1AR-01 3 130300437 130300437 G T COL6A6 Missense_Mutation p.V1194F 0.22 deleterious(0.01) benign(0.101) TCGA-AR-A1AR-01 3 140122483 140122483 C T CLSTN2 Missense_Mutation p.A82V 0.28 deleterious(0) benign(0.094) TCGA-AR-A1AR-01 3 15297852 15297852 T G SH3BP5 Intron 0.24 TCGA-AR-A1AR-01 3 186450435 186450435 T C KNG1 Missense_Mutation p.I301T 0.30 tolerated(0.1) benign(0.196) TCGA-AR-A1AR-01 3 197444928 197444928 C T KIAA0226 Missense_Mutation p.V47I 0.11 tolerated(0.06) probably_damaging(0.997) TCGA-AR-A1AR-01 3 32490993 32490993 C T CMTM7 Silent p.S127S 0.20 TCGA-AR-A1AR-01 3 52860882 52860882 C A ITIH4 Missense_Mutation p.E148D 0.30 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AR-01 3 98217028 98217028 C T OR5K2 Silent p.F168F 0.26 TCGA-AR-A1AR-01 3 9935133 9935133 T G JAGN1 3'UTR 0.28 TCGA-AR-A1AR-01 4 170557240 170557240 G T CLCN3 Splice_Site p.X54_splice 0.28 TCGA-AR-A1AR-01 5 140263908 140263908 C T PCDHA13 Silent p.G685G 0.31 TCGA-AR-A1AR-01 5 32724819 32724819 C T NPR3 Missense_Mutation p.A262V 0.37 deleterious(0.01) possibly_damaging(0.898) TCGA-AR-A1AR-01 6 110778014 110778014 G A SLC22A16 Missense_Mutation p.T87M 0.25 tolerated(0.16) benign(0.002) TCGA-AR-A1AR-01 6 33560855 33560855 C A GGNBP1 3'Flank 0.34 TCGA-AR-A1AR-01 6 54254622 54254622 G T TINAG Nonsense_Mutation p.E444* 0.21 TCGA-AR-A1AR-01 6 7609080 7609080 C T SNRNP48 Missense_Mutation p.H332Y 0.25 tolerated_low_confidence(0.07) benign(0.073) TCGA-AR-A1AR-01 7 103767084 103767085 - A ORC5 3'UTR 0.21 TCGA-AR-A1AR-01 7 121624110 121624110 G A PTPRZ1 Silent p.Q289Q 0.24 TCGA-AR-A1AR-01 7 127990957 127990957 G A PRRT4 Nonsense_Mutation p.R885* 0.25 TCGA-AR-A1AR-01 7 27833979 27833979 A T TAX1BP1 Missense_Mutation p.N483I 0.24 tolerated(0.06) benign(0.183) TCGA-AR-A1AR-01 7 38457541 38457541 C T AMPH Missense_Mutation p.E428K 0.06 tolerated(0.06) benign(0.293) TCGA-AR-A1AR-01 9 130263396 130263396 G C LRSAM1 Missense_Mutation p.E674Q 0.14 deleterious(0) probably_damaging(1) TCGA-AR-A1AR-01 9 16419611 16419611 C G BNC2 Missense_Mutation p.L892F 0.42 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AR-01 X 112065720 112065720 G T AMOT Missense_Mutation p.T212K 0.23 unknown(0) TCGA-AR-A1AR-01 X 48049613 48049613 G T SSX5 Missense_Mutation p.P182H 0.30 deleterious(0.03) possibly_damaging(0.792) TCGA-AR-A1AR-01 X 48887874 48887874 T A TFE3 Missense_Mutation p.D508V 0.17 deleterious(0.04) probably_damaging(0.942) TCGA-AR-A1AR-01 X 55757917 55757917 T - RRAGB Frame_Shift_Del p.Y167Tfs*34 0.22 TCGA-AR-A1AR-01 X 83581199 83581199 T G HDX Missense_Mutation p.K645T 0.28 tolerated(0.96) benign(0.031) TCGA-AR-A1AS-01 10 135170746 135170746 C T FUOM Silent p.L33L 0.21 TCGA-AR-A1AS-01 10 8100440 8100440 C G GATA3 Silent p.S138S 0.32 TCGA-AR-A1AS-01 10 95137179 95137182 TTTG - MYOF Frame_Shift_Del p.T669Ifs*2 0.37 TCGA-AR-A1AS-01 11 26582735 26582735 C T MUC15 Silent p.V321V 0.35 TCGA-AR-A1AS-01 11 62572858 62572858 G A NXF1 5'UTR 0.59 TCGA-AR-A1AS-01 11 6261794 6261794 G A CNGA4 Missense_Mutation p.G257D 0.33 deleterious(0) probably_damaging(0.987) TCGA-AR-A1AS-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-AR-A1AS-01 12 66638269 66638269 A C IRAK3 Silent p.A297A 0.42 TCGA-AR-A1AS-01 14 42360996 42360996 G A LRFN5 Silent p.Q643Q 0.41 TCGA-AR-A1AS-01 15 71128708 71128708 C T LARP6 Missense_Mutation p.A113T 0.46 deleterious(0) probably_damaging(0.981) TCGA-AR-A1AS-01 15 89807203 89807203 G A FANCI Missense_Mutation p.M205I 0.08 deleterious(0.01) benign(0.004) TCGA-AR-A1AS-01 16 67977911 67977911 A T LCAT Missense_Mutation p.F32I 0.51 deleterious(0) probably_damaging(0.982) TCGA-AR-A1AS-01 17 12016634 12016634 C T MAP2K4 Missense_Mutation p.S257F 0.54 deleterious(0.01) probably_damaging(1) TCGA-AR-A1AS-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.51 tolerated(0.11) benign(0.308) TCGA-AR-A1AS-01 17 78110120 78110120 G C EIF4A3 Missense_Mutation p.S333C 0.23 deleterious(0.02) benign(0.032) TCGA-AR-A1AS-01 17 78156478 78156478 C T CARD14 Nonsense_Mutation p.R80* 0.46 TCGA-AR-A1AS-01 18 48255652 48255652 C T MAPK4 Missense_Mutation p.R398C 0.27 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-AR-A1AS-01 18 9887689 9887689 C T TXNDC2 Missense_Mutation p.P405S 0.38 tolerated(0.43) possibly_damaging(0.449) TCGA-AR-A1AS-01 19 45406420 45406420 C T TOMM40 Silent p.I360I 0.13 TCGA-AR-A1AS-01 1 153043220 153043220 G T SPRR2B Nonsense_Mutation p.C32* 0.23 TCGA-AR-A1AS-01 1 162343895 162343895 G A C1orf111 Silent p.F243F 0.10 TCGA-AR-A1AS-01 1 193065756 193065756 C G GLRX2 Nonstop_Mutation p.*166Sext*4 0.18 TCGA-AR-A1AS-01 1 203819082 203819082 G A ZC3H11A Missense_Mutation p.E623K 0.16 deleterious(0.02) possibly_damaging(0.749) TCGA-AR-A1AS-01 1 206603546 206603546 G A SRGAP2 Missense_Mutation p.S424N 0.14 deleterious(0) probably_damaging(0.986) TCGA-AR-A1AS-01 1 234455857 234455857 A T SLC35F3 Silent p.V387V 0.05 TCGA-AR-A1AS-01 1 237632461 237632461 G T RYR2 Missense_Mutation p.R561I 0.21 benign(0.339) TCGA-AR-A1AS-01 1 3566551 3566551 C T WRAP73 Missense_Mutation p.E5K 0.33 deleterious(0) benign(0.085) TCGA-AR-A1AS-01 20 30457942 30457942 C A DUSP15 Intron 0.50 TCGA-AR-A1AS-01 20 45801427 45801427 G A EYA2 Silent p.V370V 0.13 TCGA-AR-A1AS-01 2 179427821 179427821 C T TTN Missense_Mutation p.D27680N 0.42 TCGA-AR-A1AS-01 2 238243265 238243270 TTACTT - COL6A3 Splice_Site p.X3076_splice 0.16 TCGA-AR-A1AS-01 2 60687616 60687616 C T BCL11A Missense_Mutation p.V811M 0.40 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AS-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.52 deleterious(0.02) probably_damaging(0.965) TCGA-AR-A1AS-01 3 50095901 50095901 A G RBM6 Missense_Mutation p.Y679C 0.52 deleterious(0) benign(0.046) TCGA-AR-A1AS-01 5 140187112 140187112 C T PCDHA4 Silent p.L114L 0.20 TCGA-AR-A1AS-01 5 160097495 160097495 C T ATP10B Missense_Mutation p.C217Y 0.31 deleterious(0.02) benign(0) TCGA-AR-A1AS-01 5 32143957 32143957 T C GOLPH3 Missense_Mutation p.I85M 0.47 deleterious(0) probably_damaging(0.942) TCGA-AR-A1AS-01 6 72006017 72006017 T C OGFRL1 Intron 0.25 TCGA-AR-A1AS-01 7 100184090 100184090 G C FBXO24 5'Flank 0.44 TCGA-AR-A1AS-01 7 131848926 131848926 C T PLXNA4 Missense_Mutation p.R1492H 0.38 deleterious(0) possibly_damaging(0.897) TCGA-AR-A1AS-01 7 142568630 142568630 G A EPHB6 Silent p.L1013L 0.43 TCGA-AR-A1AS-01 7 150269546 150269546 G A GIMAP4 Missense_Mutation p.E130K 0.42 deleterious(0.01) probably_damaging(0.964) TCGA-AR-A1AS-01 X 80370668 80370668 T G HMGN5 Missense_Mutation p.E110A 0.40 deleterious(0.01) unknown(0) TCGA-AR-A1AT-01 10 105107077 105107077 C G PCGF6 Intron 0.25 TCGA-AR-A1AT-01 10 44052156 44052156 G A ZNF239 Missense_Mutation p.R458C 0.22 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-AR-A1AT-01 10 98092128 98092128 C T DNTT Silent p.D378D 0.35 TCGA-AR-A1AT-01 11 118354912 118354912 G A KMT2A Silent p.P1367P 0.24 TCGA-AR-A1AT-01 11 18637556 18637556 T C SPTY2D1 Missense_Mutation p.T89A 0.29 deleterious(0) benign(0.217) TCGA-AR-A1AT-01 11 64591956 64591956 T G CDC42BPG Missense_Mutation p.S1549R 0.25 deleterious_low_confidence(0) unknown(0) TCGA-AR-A1AT-01 12 44130339 44130339 G A PUS7L Missense_Mutation p.H524Y 0.18 deleterious(0.02) benign(0.346) TCGA-AR-A1AT-01 13 42044776 42044776 C G RGCC 3'UTR 0.39 TCGA-AR-A1AT-01 14 104492006 104492006 C T TDRD9 Missense_Mutation p.P942S 0.23 tolerated(0.57) benign(0.014) TCGA-AR-A1AT-01 14 19988188 19988188 G T POTEM 3'UTR 0.23 TCGA-AR-A1AT-01 14 94847276 94847276 T - SERPINA1 Frame_Shift_Del p.K283Nfs*41 0.23 TCGA-AR-A1AT-01 15 40590117 40590117 G A PLCB2 Missense_Mutation p.P400L 0.30 tolerated(0.07) benign(0.016) TCGA-AR-A1AT-01 15 52901580 52901580 G C FAM214A Missense_Mutation p.H511D 0.27 deleterious(0.04) benign(0.13) TCGA-AR-A1AT-01 15 68118648 68118648 G A SKOR1 Missense_Mutation p.R347H 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AR-A1AT-01 16 24801088 24801088 C T TNRC6A Silent p.N375N 0.20 TCGA-AR-A1AT-01 16 30129736 30129736 G A MAPK3 Silent p.S159S 0.22 TCGA-AR-A1AT-01 16 68845694 68845694 A - CDH1 Frame_Shift_Del p.N315Ifs*41 0.27 TCGA-AR-A1AT-01 17 38144987 38144987 C G PSMD3 Missense_Mutation p.R201G 0.06 deleterious(0) probably_damaging(0.995) TCGA-AR-A1AT-01 19 45574978 45574978 C A ZNF296 Missense_Mutation p.G437C 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A1AT-01 19 9085518 9085518 A G MUC16 Silent p.S2099S 0.21 TCGA-AR-A1AT-01 1 108145035 108145035 T G VAV3 Missense_Mutation p.K735T 0.23 tolerated(0.18) benign(0.025) TCGA-AR-A1AT-01 1 108145059 108145059 A T VAV3 Missense_Mutation p.F727Y 0.25 tolerated(0.74) benign(0.003) TCGA-AR-A1AT-01 1 51864825 51864825 C A EPS15 Missense_Mutation p.G644V 0.27 deleterious(0) probably_damaging(0.94) TCGA-AR-A1AT-01 21 36259157 36259157 G - RUNX1 Frame_Shift_Del p.L112Cfs*10 0.29 TCGA-AR-A1AT-01 22 29837624 29837624 G A RFPL1 Missense_Mutation p.R156Q 0.28 tolerated(0.19) benign(0.159) TCGA-AR-A1AT-01 22 36695005 36695005 C - MYH9 Frame_Shift_Del p.K1020Nfs*9 0.24 TCGA-AR-A1AT-01 2 179592332 179592332 G C TTN Missense_Mutation p.T6658S 0.21 TCGA-AR-A1AT-01 2 228475956 228475956 G C C2orf83 3'UTR 0.33 TCGA-AR-A1AT-01 2 231115717 231115717 A G SP140 Missense_Mutation p.E333G 0.13 deleterious(0.04) possibly_damaging(0.51) TCGA-AR-A1AT-01 2 96861224 96861224 C G STARD7 Missense_Mutation p.Q118H 0.27 tolerated(0.08) benign(0.003) TCGA-AR-A1AT-01 5 33937522 33937522 C T RXFP3 Missense_Mutation p.A226V 0.40 tolerated(0.53) benign(0.009) TCGA-AR-A1AT-01 7 4780597 4780597 C T FOXK1 Missense_Mutation p.P230L 0.25 deleterious(0) probably_damaging(0.985) TCGA-AR-A1AT-01 8 37792595 37792595 G A GOT1L1 Silent p.L356L 0.20 TCGA-AR-A1AT-01 8 82751846 82751846 C - SNX16 Splice_Site p.X125_splice 0.09 TCGA-AR-A1AT-01 9 123808569 123808569 G A C5 Missense_Mutation p.T53I 0.13 tolerated(0.25) benign(0.018) TCGA-AR-A1AT-01 9 72727930 72727930 T C MAMDC2 Silent p.N175N 0.25 TCGA-AR-A1AT-01 9 84532898 84532898 G T SPATA31D5P RNA 0.18 TCGA-AR-A1AU-01 10 105200238 105200238 A T PDCD11 Missense_Mutation p.Q1447L 0.23 tolerated(0.4) benign(0.002) TCGA-AR-A1AU-01 10 135125374 135125374 G A ZNF511 Intron 0.58 TCGA-AR-A1AU-01 10 22700071 22700071 A G SPAG6 Missense_Mutation p.S476G 0.09 tolerated(0.38) benign(0.027) TCGA-AR-A1AU-01 10 92656100 92656100 C T RPP30 Silent p.D216D 0.18 TCGA-AR-A1AU-01 11 5068073 5068073 C A OR52J3 Silent p.I106I 0.04 TCGA-AR-A1AU-01 11 6592178 6592178 G A DNHD1 Missense_Mutation p.R4479Q 0.24 benign(0.027) TCGA-AR-A1AU-01 11 793561 793561 G A SLC25A22 Silent p.N87N 0.14 TCGA-AR-A1AU-01 15 22866738 22866738 G A TUBGCP5 Missense_Mutation p.V784I 0.24 tolerated(0.44) benign(0.005) TCGA-AR-A1AU-01 16 68293055 68293055 A G PLA2G15 Missense_Mutation p.N245S 0.26 tolerated(0.06) probably_damaging(0.969) TCGA-AR-A1AU-01 16 71976599 71976599 C T PKD1L3 RNA 0.22 TCGA-AR-A1AU-01 17 12032570 12032571 - TC MAP2K4 Frame_Shift_Ins p.S339Rfs*25 0.27 TCGA-AR-A1AU-01 17 18145296 18145296 C T LLGL1 Silent p.R955R 0.36 TCGA-AR-A1AU-01 17 33504550 33504550 G A UNC45B Missense_Mutation p.D728N 0.16 tolerated(0.92) benign(0) TCGA-AR-A1AU-01 17 7217447 7217447 G A GPS2 Nonsense_Mutation p.Q117* 0.37 TCGA-AR-A1AU-01 19 17918999 17918999 G A B3GNT3 Missense_Mutation p.R128H 0.50 deleterious(0.03) benign(0.091) TCGA-AR-A1AU-01 19 41183152 41183152 G C NUMBL Missense_Mutation p.P239A 0.17 tolerated(0.8) benign(0) TCGA-AR-A1AU-01 1 23847527 23847527 C T E2F2 Silent p.G205G 0.33 TCGA-AR-A1AU-01 1 24390618 24390618 G A MYOM3 Missense_Mutation p.A1189V 0.30 tolerated(0.11) probably_damaging(0.995) TCGA-AR-A1AU-01 1 89206786 89206786 A C PKN2 Missense_Mutation p.E55A 0.11 tolerated(0.32) probably_damaging(0.986) TCGA-AR-A1AU-01 3 111901058 111901058 G C SLC9C1 Missense_Mutation p.I857M 0.26 deleterious(0.02) benign(0.276) TCGA-AR-A1AU-01 3 121342188 121342188 G A FBXO40 Missense_Mutation p.E638K 0.19 tolerated(1) benign(0.001) TCGA-AR-A1AU-01 3 55107522 55107522 T C CACNA2D3 Missense_Mutation p.V1013A 0.15 tolerated(0.08) benign(0.42) TCGA-AR-A1AU-01 6 168289974 168289974 T G MLLT4 Nonsense_Mutation p.L326* 0.29 TCGA-AR-A1AU-01 6 24445867 24445867 C A GPLD1 Missense_Mutation p.A643S 0.27 tolerated(0.25) benign(0.219) TCGA-AR-A1AU-01 6 24445954 24445954 C G GPLD1 Missense_Mutation p.K642N 0.21 tolerated(0.11) possibly_damaging(0.694) TCGA-AR-A1AU-01 9 109691662 109691662 A G ZNF462 Silent p.E1823E 0.33 TCGA-AR-A1AU-01 X 133955536 133955536 G A FAM122C Intron 0.19 TCGA-AR-A1AV-01 10 34620159 34620159 G A PARD3 Missense_Mutation p.R910C 0.20 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AV-01 10 8115973 8115976 CCGC - GATA3 Frame_Shift_Del p.A442Wfs*33 0.73 TCGA-AR-A1AV-01 10 89603875 89603875 C G CFL1P1 RNA 0.19 TCGA-AR-A1AV-01 11 64622048 64622048 C T EHD1 Silent p.T454T 0.35 TCGA-AR-A1AV-01 12 133312082 133312082 T C ANKLE2 Missense_Mutation p.K537R 0.19 tolerated(1) benign(0.009) TCGA-AR-A1AV-01 12 8083112 8083112 G C SLC2A3 Missense_Mutation p.L213V 0.24 deleterious(0) probably_damaging(0.989) TCGA-AR-A1AV-01 13 47469795 47469795 C T HTR2A Missense_Mutation p.V83I 0.20 tolerated(0.83) benign(0.002) TCGA-AR-A1AV-01 14 102675094 102675094 G A WDR20 Missense_Mutation p.G227E 0.51 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AV-01 14 50298943 50298943 G A NEMF Missense_Mutation p.P263L 0.27 deleterious(0.03) benign(0.158) TCGA-AR-A1AV-01 15 65792988 65792988 T G DPP8 Missense_Mutation p.S184R 0.21 deleterious(0.01) possibly_damaging(0.538) TCGA-AR-A1AV-01 16 31202957 31202957 T G FUS 3'UTR 0.12 TCGA-AR-A1AV-01 16 3299561 3299561 C T MEFV Missense_Mutation p.R377H 0.20 tolerated(0.06) benign(0.409) TCGA-AR-A1AV-01 16 57180088 57180088 T C CPNE2 Missense_Mutation p.M465T 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-AR-A1AV-01 16 67902441 67902441 C T NUTF2 Missense_Mutation p.A70V 0.46 tolerated(0.26) benign(0.015) TCGA-AR-A1AV-01 17 56603076 56603076 C T SEPT4 Missense_Mutation p.R188Q 0.22 deleterious(0) probably_damaging(0.989) TCGA-AR-A1AV-01 18 23915146 23915146 C G TAF4B Missense_Mutation p.S756C 0.37 deleterious(0.03) probably_damaging(0.983) TCGA-AR-A1AV-01 19 11457280 11457280 C T CCDC159 5'UTR 0.21 TCGA-AR-A1AV-01 19 17394278 17394278 G T ANKLE1 Silent p.S235S 0.24 TCGA-AR-A1AV-01 19 19032748 19032748 T G DDX49 Missense_Mutation p.F141C 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-AR-A1AV-01 19 38126475 38126475 C T ZFP30 Missense_Mutation p.E323K 0.19 tolerated(0.09) probably_damaging(0.994) TCGA-AR-A1AV-01 1 110586328 110586328 G A STRIP1 Missense_Mutation p.R379Q 0.18 tolerated(0.53) benign(0.029) TCGA-AR-A1AV-01 1 120286794 120286794 C A PHGDH 3'UTR 0.44 TCGA-AR-A1AV-01 1 153965204 153965204 C T NUP210L 3'UTR 0.55 TCGA-AR-A1AV-01 1 156813013 156813013 T C INSRR Missense_Mutation p.D970G 0.13 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AV-01 1 32694368 32694369 GG - EIF3I Frame_Shift_Del p.R227Hfs*15 0.24 TCGA-AR-A1AV-01 1 67447566 67447568 AAG - MIER1 In_Frame_Del p.E446del 0.25 TCGA-AR-A1AV-01 20 1616960 1616960 G A SIRPG Missense_Mutation p.R208C 0.22 tolerated(0.07) benign(0.009) TCGA-AR-A1AV-01 21 31023532 31023532 T C GRIK1 Missense_Mutation p.N287S 0.39 tolerated(0.25) benign(0.001) TCGA-AR-A1AV-01 22 20937198 20937198 C T MED15 Missense_Mutation p.T494M 0.43 tolerated(0.17) probably_damaging(0.959) TCGA-AR-A1AV-01 2 232262638 232262638 G T B3GNT7 Missense_Mutation p.A70S 0.26 tolerated(0.7) benign(0.002) TCGA-AR-A1AV-01 3 159711616 159711620 TGATG - IL12A Frame_Shift_Del p.D198Afs*10 0.26 TCGA-AR-A1AV-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.82 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A1AV-01 3 29781333 29781333 C T RBMS3 Silent p.D174D 0.50 TCGA-AR-A1AV-01 3 73432563 73432563 C T PDZRN3 Missense_Mutation p.D1052N 0.50 deleterious(0) probably_damaging(0.945) TCGA-AR-A1AV-01 3 9490166 9490166 C A SETD5 Missense_Mutation p.A733E 0.16 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AV-01 4 151356833 151356833 A T LRBA Missense_Mutation p.L2328M 0.30 tolerated(0.23) probably_damaging(0.972) TCGA-AR-A1AV-01 4 155157976 155157976 G A DCHS2 Missense_Mutation p.P2155S 0.27 tolerated(0.67) benign(0.095) TCGA-AR-A1AV-01 4 55152033 55152033 G A PDGFRA Missense_Mutation p.R822H 0.32 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AV-01 4 6324971 6324971 G A PPP2R2C 3'UTR 0.24 TCGA-AR-A1AV-01 4 82125820 82125820 C A PRKG2 Nonsense_Mutation p.E128* 0.17 TCGA-AR-A1AV-01 4 8224684 8224684 C T SH3TC1 Silent p.S410S 0.07 TCGA-AR-A1AV-01 5 82817939 82817939 G T VCAN Nonsense_Mutation p.E1272* 0.16 TCGA-AR-A1AV-01 6 110550072 110550072 C T CDC40 Silent p.I485I 0.17 TCGA-AR-A1AV-01 6 123576256 123576256 C T TRDN Missense_Mutation p.E641K 0.38 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-AR-A1AV-01 6 158834165 158834165 C T TULP4 Silent p.F107F 0.22 TCGA-AR-A1AV-01 6 27835099 27835099 G A HIST1H1B Missense_Mutation p.A70V 0.49 deleterious(0.02) possibly_damaging(0.765) TCGA-AR-A1AV-01 6 86322481 86322481 A G SYNCRIP 3'Flank 0.24 TCGA-AR-A1AV-01 6 90660239 90660239 G A BACH2 Missense_Mutation p.A529V 0.20 deleterious(0.04) probably_damaging(0.988) TCGA-AR-A1AV-01 7 78150872 78150881 CTTGGAGTGG - MAGI2 Frame_Shift_Del p.A207Vfs*12 0.34 TCGA-AR-A1AV-01 7 98779568 98779568 G A KPNA7 Missense_Mutation p.L419F 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A1AV-01 8 21931298 21931298 A T DMTN Missense_Mutation p.I263F 0.57 tolerated(0.23) benign(0.005) TCGA-AR-A1AV-01 9 34990767 34990767 T G DNAJB5 Nonsense_Mutation p.L89* 0.50 TCGA-AR-A1AV-01 X 7811573 7811573 G A VCX Missense_Mutation p.R46H 0.04 tolerated(0.12) unknown(0) TCGA-AR-A1AV-01 X 91066264 91066264 C T PCDH11X 5'UTR 0.13 TCGA-AR-A1AW-01 10 69921516 69921516 A T MYPN Intron 0.06 TCGA-AR-A1AW-01 14 55510028 55510028 C A SOCS4 Missense_Mutation p.S90Y 0.13 deleterious(0) probably_damaging(0.989) TCGA-AR-A1AW-01 16 81303769 81303769 T A BCMO1 Nonsense_Mutation p.Y283* 0.13 TCGA-AR-A1AW-01 17 29586058 29586058 G C NF1 Missense_Mutation p.Q1447H 0.26 deleterious(0.01) benign(0.007) TCGA-AR-A1AW-01 17 56603750 56603750 C G SEPT4 Intron 0.07 TCGA-AR-A1AW-01 17 68128459 68128459 T G KCNJ16 Missense_Mutation p.F77L 0.07 deleterious(0) probably_damaging(0.995) TCGA-AR-A1AW-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.36 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AW-01 17 79414760 79414760 G - RP11-1055B8.7 Frame_Shift_Del p.S1291Afs*42 0.27 TCGA-AR-A1AW-01 18 618024 618024 T C CLUL1 Silent p.F8F 0.10 TCGA-AR-A1AW-01 19 10668482 10668482 G A KRI1 Silent p.A489A 0.10 TCGA-AR-A1AW-01 19 31048268 31048268 G A ZNF536 3'UTR 0.18 TCGA-AR-A1AW-01 19 52448960 52448960 C T ZNF613 Silent p.V608V 0.10 TCGA-AR-A1AW-01 19 55107152 55107152 C T LILRA1 Missense_Mutation p.A237V 0.20 tolerated(0.06) benign(0.344) TCGA-AR-A1AW-01 19 5729895 5729895 T C CATSPERD Silent p.F72F 0.09 TCGA-AR-A1AW-01 19 9007506 9007506 G A MUC16 Silent p.S13154S 0.12 TCGA-AR-A1AW-01 1 167741689 167741689 C T MPZL1 Nonsense_Mutation p.Q146* 0.13 TCGA-AR-A1AW-01 1 178411925 178411925 G A RASAL2 Missense_Mutation p.R348H 0.26 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AW-01 1 186122938 186122938 C A HMCN1 Silent p.T5025T 0.05 TCGA-AR-A1AW-01 1 237664195 237664195 A T RYR2 Silent p.A796A 0.05 TCGA-AR-A1AW-01 1 28530302 28530302 G A DNAJC8 Nonsense_Mutation p.Q199* 0.04 TCGA-AR-A1AW-01 20 57485019 57485019 A G GNAS Missense_Mutation p.I928V 0.20 deleterious(0.04) probably_damaging(0.912) TCGA-AR-A1AW-01 20 57769425 57769425 G A ZNF831 Silent p.G1117G 0.11 TCGA-AR-A1AW-01 20 5844033 5844033 A C C20orf196 Missense_Mutation p.D181A 0.05 tolerated(0.07) benign(0.039) TCGA-AR-A1AW-01 21 33064135 33064135 T C SCAF4 Missense_Mutation p.I575V 0.06 benign(0.391) TCGA-AR-A1AW-01 21 34876307 34876307 G A GART 3'UTR 0.24 TCGA-AR-A1AW-01 3 112545871 112545871 G A CD200R1L Silent p.G216G 0.08 TCGA-AR-A1AW-01 3 151161490 151161490 C T IGSF10 Missense_Mutation p.E1749K 0.10 tolerated(0.08) possibly_damaging(0.744) TCGA-AR-A1AW-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.19 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A1AW-01 3 36879889 36879889 C A TRANK1 Missense_Mutation p.A1787S 0.15 deleterious(0.03) possibly_damaging(0.858) TCGA-AR-A1AW-01 3 9783065 9783065 A C BRPF1 Missense_Mutation p.E599A 0.17 deleterious(0) probably_damaging(0.991) TCGA-AR-A1AW-01 4 155491635 155491635 T G FGB Missense_Mutation p.C437G 0.05 deleterious(0) probably_damaging(0.986) TCGA-AR-A1AW-01 4 6087176 6087176 C T JAKMIP1 Missense_Mutation p.G269R 0.06 deleterious(0.02) possibly_damaging(0.895) TCGA-AR-A1AW-01 6 151687968 151687968 T C ZBTB2 Missense_Mutation p.H78R 0.08 deleterious(0) probably_damaging(0.991) TCGA-AR-A1AW-01 6 53156612 53156612 G A ELOVL5 Missense_Mutation p.L70F 0.12 tolerated(0.61) probably_damaging(0.927) TCGA-AR-A1AW-01 7 72718793 72718793 C T NSUN5 Missense_Mutation p.A236T 0.05 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AW-01 9 72071269 72071269 C T APBA1 Missense_Mutation p.R561Q 0.09 deleterious(0) possibly_damaging(0.756) TCGA-AR-A1AW-01 X 100871711 100871711 C G ARMCX6 5'UTR 0.18 TCGA-AR-A1AW-01 X 133559244 133559244 A T PHF6 Missense_Mutation p.N328Y 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A1AW-01 X 135431906 135431906 T C GPR112 Missense_Mutation p.L2014P 0.05 deleterious(0.02) probably_damaging(0.95) TCGA-AR-A1AW-01 X 148798316 148798316 C G MAGEA11 Silent p.A390A 0.11 TCGA-AR-A1AW-01 X 99662740 99662740 G A PCDH19 Missense_Mutation p.R286C 0.11 deleterious(0) probably_damaging(0.977) TCGA-AR-A1AW-01 X 99936233 99936233 G A SYTL4 Missense_Mutation p.R517W 0.12 deleterious(0.01) benign(0.004) TCGA-AR-A1AX-01 11 104915136 104915136 G A CARD16 Missense_Mutation p.T86M 0.11 tolerated(0.05) benign(0.389) TCGA-AR-A1AX-01 12 6701583 6701583 C T CHD4 Missense_Mutation p.R975H 0.07 deleterious(0) probably_damaging(0.954) TCGA-AR-A1AX-01 14 64557671 64557671 A G SYNE2 Missense_Mutation p.M3961V 0.11 benign(0.002) TCGA-AR-A1AX-01 17 7579355 7579355 A T TP53 Missense_Mutation p.L111Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AX-01 19 15063812 15063812 A G SLC1A6 Missense_Mutation p.M476T 0.14 deleterious(0) possibly_damaging(0.672) TCGA-AR-A1AX-01 19 15383867 15383867 G A BRD4 Missense_Mutation p.P15L 0.06 unknown(0) TCGA-AR-A1AX-01 19 36673496 36673496 G A ZNF565 Missense_Mutation p.R458C 0.11 tolerated(0.2) probably_damaging(0.974) TCGA-AR-A1AX-01 19 47204110 47204110 T C PRKD2 Missense_Mutation p.E356G 0.19 tolerated(0.15) benign(0.276) TCGA-AR-A1AX-01 19 57175909 57175909 G T ZNF835 Silent p.R220R 0.14 TCGA-AR-A1AX-01 1 111854875 111854875 G A CHIA Missense_Mutation p.R40H 0.06 tolerated(0.06) benign(0.006) TCGA-AR-A1AX-01 1 206566176 206566176 C T SRGAP2 Missense_Mutation p.S120F 0.04 deleterious(0) probably_damaging(0.988) TCGA-AR-A1AX-01 1 44137307 44137307 C T KDM4A Missense_Mutation p.L499F 0.10 tolerated(0.73) benign(0) TCGA-AR-A1AX-01 1 63008281 63008281 T C DOCK7 Missense_Mutation p.M984V 0.07 deleterious(0.01) benign(0.036) TCGA-AR-A1AX-01 20 58322833 58322833 G A PHACTR3 Missense_Mutation p.G101S 0.10 tolerated(0.77) benign(0.007) TCGA-AR-A1AX-01 21 30949326 30949326 T A GRIK1 Missense_Mutation p.E696D 0.11 deleterious(0.05) possibly_damaging(0.806) TCGA-AR-A1AX-01 21 31661715 31661715 G A KRTAP25-1 Missense_Mutation p.R32C 0.09 deleterious(0.02) benign(0.293) TCGA-AR-A1AX-01 2 107041128 107041128 G A RGPD3 Silent p.L1099L 0.14 TCGA-AR-A1AX-01 3 154055616 154055616 G A GPR149 Missense_Mutation p.P690S 0.10 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AX-01 3 197894732 197894732 G A FAM157A RNA 0.08 TCGA-AR-A1AX-01 3 33855109 33855109 C T PDCD6IP Missense_Mutation p.S108F 0.10 deleterious(0.02) benign(0.259) TCGA-AR-A1AX-01 4 57181864 57181864 C T KIAA1211 Silent p.G732G 0.08 TCGA-AR-A1AX-01 5 112177283 112177283 G A APC Missense_Mutation p.E1998K 0.11 benign(0.284) TCGA-AR-A1AX-01 5 1212554 1212554 C T SLC6A19 Silent p.S206S 0.17 TCGA-AR-A1AX-01 5 142150475 142150475 T C ARHGAP26 Missense_Mutation p.L50P 0.11 deleterious(0.02) benign(0.365) TCGA-AR-A1AX-01 5 156589749 156589749 C T FAM71B Silent p.S509S 0.10 TCGA-AR-A1AX-01 5 15936827 15936827 C T FBXL7 Silent p.F336F 0.10 TCGA-AR-A1AX-01 5 64483999 64483999 C A ADAMTS6 Silent p.G918G 0.12 TCGA-AR-A1AX-01 5 67591141 67591152 CCAATACTTGAT - PIK3R1 In_Frame_Del p.D578_M582delinsE 0.16 TCGA-AR-A1AX-01 8 41517976 41517976 G T ANK1 Intron 0.31 TCGA-AR-A1AX-01 9 3346673 3346673 C T RFX3 Missense_Mutation p.G70E 0.07 deleterious(0) possibly_damaging(0.897) TCGA-AR-A1AX-01 9 79841470 79841470 C G VPS13A Nonsense_Mutation p.S438* 0.09 TCGA-AR-A1AX-01 9 99711835 99711835 A T HIATL2 Splice_Site p.X132_splice 0.12 TCGA-AR-A1AX-01 X 31525503 31525503 A - DMD Frame_Shift_Del p.I2762Tfs*2 0.20 TCGA-AR-A1AX-01 X 49021218 49021218 A T MAGIX Silent p.T99T 0.12 TCGA-AR-A1AY-01 10 116735054 116735054 T C TRUB1 Silent p.P322P 0.06 TCGA-AR-A1AY-01 10 129839137 129839137 A T PTPRE Splice_Site 0.62 TCGA-AR-A1AY-01 10 43691545 43691545 C T RASGEF1A 3'UTR 0.25 TCGA-AR-A1AY-01 10 75854054 75854054 C T VCL Nonsense_Mutation p.R460* 0.48 TCGA-AR-A1AY-01 11 101353892 101353892 C A TRPC6 Missense_Mutation p.G433V 0.33 deleterious(0) possibly_damaging(0.728) TCGA-AR-A1AY-01 11 121028626 121028626 C G TECTA Missense_Mutation p.P1461R 0.16 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AY-01 11 65715545 65715545 C T TSGA10IP RNA 0.34 TCGA-AR-A1AY-01 12 102315029 102315029 T C DRAM1 Silent p.G236G 0.31 TCGA-AR-A1AY-01 12 106466578 106466578 A C NUAK1 Missense_Mutation p.F208C 0.41 deleterious(0.03) probably_damaging(0.943) TCGA-AR-A1AY-01 12 121000751 121000751 C T RNF10 Missense_Mutation p.R378W 0.03 deleterious(0) probably_damaging(0.998) TCGA-AR-A1AY-01 12 15661533 15661533 G T PTPRO Silent p.L432L 0.42 TCGA-AR-A1AY-01 12 90024403 90024403 G A ATP2B1 Silent p.G269G 0.32 TCGA-AR-A1AY-01 13 49281364 49281364 C A CYSLTR2 Missense_Mutation p.F137L 0.07 deleterious(0.02) possibly_damaging(0.874) TCGA-AR-A1AY-01 14 55819309 55819309 C G FBXO34 3'UTR 0.58 TCGA-AR-A1AY-01 14 75264973 75264973 T G YLPM1 Missense_Mutation p.H991Q 0.48 possibly_damaging(0.791) TCGA-AR-A1AY-01 15 35275644 35275656 ATGATATACTCTG - ZNF770 5'UTR 0.52 TCGA-AR-A1AY-01 15 90169242 90169242 C T TICRR Missense_Mutation p.P1851L 0.06 deleterious(0) probably_damaging(1) TCGA-AR-A1AY-01 16 50816338 50816338 G A CYLD Missense_Mutation p.G596D 0.65 deleterious(0) probably_damaging(1) TCGA-AR-A1AY-01 17 7579321 7579322 CA - TP53 Frame_Shift_Del p.V122Dfs*26 0.50 TCGA-AR-A1AY-01 18 21451420 21451420 G A LAMA3 Missense_Mutation p.R1598H 0.42 possibly_damaging(0.575) TCGA-AR-A1AY-01 18 34289239 34289239 G T FHOD3 Missense_Mutation p.R631S 0.35 deleterious_low_confidence(0.05) benign(0.1) TCGA-AR-A1AY-01 19 14090271 14090271 G A RFX1 Silent p.H274H 0.34 TCGA-AR-A1AY-01 19 23329065 23329065 C T ZNF730 Missense_Mutation p.R407C 0.29 tolerated(0.22) possibly_damaging(0.708) TCGA-AR-A1AY-01 19 3543315 3543315 C T C19orf71 Missense_Mutation p.R56W 0.41 tolerated(0.14) benign(0.023) TCGA-AR-A1AY-01 19 45303662 45303662 C G CBLC Missense_Mutation p.P463A 0.33 tolerated_low_confidence(0.15) benign(0.074) TCGA-AR-A1AY-01 19 49995067 49995067 G C RPL13A Missense_Mutation p.V203L 0.72 deleterious(0.03) benign(0.025) TCGA-AR-A1AY-01 19 53432462 53432462 G C ZNF321P Missense_Mutation p.I132M 0.03 tolerated(0.15) possibly_damaging(0.557) TCGA-AR-A1AY-01 1 153177464 153177464 G A LELP1 Missense_Mutation p.C94Y 0.56 unknown(0) TCGA-AR-A1AY-01 1 154841929 154841929 G A KCNN3 Missense_Mutation p.T171M 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-AR-A1AY-01 1 161198536 161198536 C G TOMM40L Missense_Mutation p.T239R 0.22 tolerated(0.34) probably_damaging(0.981) TCGA-AR-A1AY-01 1 167095632 167095632 G A DUSP27 Missense_Mutation p.D422N 0.54 tolerated(0.26) benign(0.011) TCGA-AR-A1AY-01 1 179520207 179520207 G A NPHS2 3'UTR 0.62 TCGA-AR-A1AY-01 1 179816677 179816677 C A TOR1AIP2 Missense_Mutation p.W216C 0.42 deleterious(0.03) benign(0.085) TCGA-AR-A1AY-01 1 214551307 214551307 C A PTPN14 Nonsense_Mutation p.E895* 0.04 TCGA-AR-A1AY-01 1 229653779 229653779 C T ABCB10 3'UTR 0.24 TCGA-AR-A1AY-01 1 26694191 26694191 G T ZNF683 Missense_Mutation p.S71Y 0.31 deleterious(0) probably_damaging(0.982) TCGA-AR-A1AY-01 1 31898637 31898637 G A SERINC2 Missense_Mutation p.G172S 0.36 deleterious(0) probably_damaging(0.989) TCGA-AR-A1AY-01 1 32096351 32096351 G C PEF1 Missense_Mutation p.L240V 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-AR-A1AY-01 1 94953135 94953135 C T ABCD3 Missense_Mutation p.S312L 0.41 tolerated(0.71) benign(0.002) TCGA-AR-A1AY-01 20 9440400 9440400 A G PLCB4 Missense_Mutation p.K1052R 0.10 tolerated(0.12) possibly_damaging(0.628) TCGA-AR-A1AY-01 21 35742917 35742917 A T KCNE2 Missense_Mutation p.Y47F 0.39 tolerated(0.34) possibly_damaging(0.533) TCGA-AR-A1AY-01 21 41032610 41032610 G C B3GALT5 Missense_Mutation p.G42R 0.41 tolerated(0.08) benign(0.009) TCGA-AR-A1AY-01 21 45826557 45826557 C T TRPM2 Silent p.I957I 0.06 TCGA-AR-A1AY-01 22 31289855 31289855 G A OSBP2 Missense_Mutation p.G748S 0.80 deleterious(0) probably_damaging(1) TCGA-AR-A1AY-01 22 37892477 37892477 G A CARD10 Missense_Mutation p.P680S 0.76 tolerated(0.07) benign(0.007) TCGA-AR-A1AY-01 2 36994428 36994428 G A VIT Missense_Mutation p.D227N 0.36 tolerated_low_confidence(0.26) benign(0.148) TCGA-AR-A1AY-01 2 79312688 79312688 G T REG1B Nonsense_Mutation p.Y121* 0.36 TCGA-AR-A1AY-01 3 113440684 113440684 C T NAA50 Missense_Mutation p.A145T 0.17 tolerated(0.14) benign(0.093) TCGA-AR-A1AY-01 3 123456340 123456340 G A MYLK Silent p.N213N 0.38 TCGA-AR-A1AY-01 3 128060108 128060108 C A EEFSEC Missense_Mutation p.F273L 0.46 deleterious(0) probably_damaging(0.999) TCGA-AR-A1AY-01 3 151532014 151532014 C T AADAC Missense_Mutation p.P22S 0.33 deleterious(0.02) probably_damaging(0.97) TCGA-AR-A1AY-01 3 49692013 49692013 C A BSN Missense_Mutation p.T1675N 0.05 unknown(0) TCGA-AR-A1AY-01 3 50211374 50211374 C T SEMA3F Silent p.R87R 0.19 TCGA-AR-A1AY-01 3 62356997 62356997 C A FEZF2 Missense_Mutation p.G339C 0.38 deleterious(0) probably_damaging(0.997) TCGA-AR-A1AY-01 3 88188575 88188575 C T ZNF654 Missense_Mutation p.L39F 0.33 tolerated(0.18) probably_damaging(0.949) TCGA-AR-A1AY-01 4 166978409 166978409 G A TLL1 Silent p.Q598Q 0.06 TCGA-AR-A1AY-01 4 74319576 74319576 T A AFP Missense_Mutation p.C583S 0.62 deleterious(0) probably_damaging(1) TCGA-AR-A1AY-01 4 88052306 88052307 AG - AFF1 Frame_Shift_Del p.E1013Vfs*2 0.39 TCGA-AR-A1AY-01 5 140222367 140222367 C T PCDHA8 Silent p.N487N 0.27 TCGA-AR-A1AY-01 5 150076368 150076368 C T RBM22 Silent p.Q119Q 0.66 TCGA-AR-A1AY-01 5 154395359 154395359 G A KIF4B Missense_Mutation p.R647Q 0.64 deleterious(0) probably_damaging(0.991) TCGA-AR-A1AY-01 5 56183244 56183244 G A MAP3K1 Missense_Mutation p.R1385K 0.06 tolerated(0.32) possibly_damaging(0.676) TCGA-AR-A1AY-01 6 121615779 121615779 G A TBC1D32 Nonsense_Mutation p.Q390* 0.39 TCGA-AR-A1AY-01 6 146207810 146207810 A T SHPRH 3'UTR 0.32 TCGA-AR-A1AY-01 6 36178029 36178029 G A BRPF3 Missense_Mutation p.D635N 0.23 deleterious(0) probably_damaging(1) TCGA-AR-A1AY-01 6 44121849 44121849 T C TMEM63B Missense_Mutation p.L717P 0.02 deleterious(0) possibly_damaging(0.792) TCGA-AR-A1AY-01 6 86351074 86351074 C T SYNCRIP Silent p.Q28Q 0.36 TCGA-AR-A1AY-01 7 138946092 138946092 G A UBN2 Missense_Mutation p.E334K 0.37 deleterious(0) probably_damaging(0.952) TCGA-AR-A1AY-01 8 103283420 103283420 C G UBR5 Missense_Mutation p.E2343Q 0.03 tolerated(0.5) benign(0.024) TCGA-AR-A1AY-01 8 13965683 13965683 G T SGCZ Silent p.S203S 0.52 TCGA-AR-A1AY-01 9 117005 117007 TCC - FOXD4 In_Frame_Del p.E371del 0.11 TCGA-AR-A1AY-01 9 136266928 136266928 G A C9orf96 Silent p.L420L 0.62 TCGA-AR-A1AY-01 9 34724646 34724646 C - FAM205A Frame_Shift_Del p.G864Efs*8 0.38 TCGA-AR-A1AY-01 X 3019142 3019142 G A ARSF Missense_Mutation p.A328T 0.61 tolerated(0.56) benign(0.206) TCGA-AR-A1AY-01 X 32398799 32398799 T C DMD Splice_Site p.X1559_splice 0.06 TCGA-AR-A1AY-01 X 36366361 36366361 G A CXorf30 Nonsense_Mutation p.W300* 0.58 TCGA-AR-A1AY-01 X 47272787 47272787 G C ZNF157 Missense_Mutation p.E439Q 0.70 deleterious(0.02) benign(0.019) TCGA-AR-A24H-01 10 102584408 102584408 G A PAX2 Missense_Mutation p.R331H 0.78 deleterious(0.01) probably_damaging(0.993) TCGA-AR-A24H-01 10 43650986 43650986 A G CSGALNACT2 Missense_Mutation p.K130R 0.20 tolerated(0.42) benign(0.057) TCGA-AR-A24H-01 10 49988074 49988074 G A WDFY4 Nonsense_Mutation p.W1162* 0.50 TCGA-AR-A24H-01 10 52390778 52390778 G A RP11-50E11.3 RNA 0.18 TCGA-AR-A24H-01 10 78674713 78674713 G A KCNMA1 Silent p.I982I 0.32 TCGA-AR-A24H-01 11 128359380 128359380 G T ETS1 Silent p.R114R 0.33 TCGA-AR-A24H-01 11 19864448 19864460 TCCGAAGAACAGA - NAV2 Frame_Shift_Del p.N142* 0.70 TCGA-AR-A24H-01 11 47198382 47198382 G A ARFGAP2 Missense_Mutation p.T8I 0.22 tolerated(0.05) benign(0.047) TCGA-AR-A24H-01 11 58170265 58170265 A G OR5B3 Silent p.F206F 0.17 TCGA-AR-A24H-01 11 71155930 71155930 G C DHCR7 Silent p.T23T 0.56 TCGA-AR-A24H-01 11 74000171 74000171 C T P4HA3 Missense_Mutation p.G241E 0.18 deleterious(0) probably_damaging(0.963) TCGA-AR-A24H-01 11 7670762 7670762 G C PPFIBP2 Splice_Site p.X667_splice 0.18 TCGA-AR-A24H-01 12 101430911 101430911 G T ANO4 Missense_Mutation p.A259S 0.72 deleterious(0.01) possibly_damaging(0.474) TCGA-AR-A24H-01 12 113425213 113425213 C T OAS2 Intron 0.33 TCGA-AR-A24H-01 12 122710562 122710562 T A DIABLO 5'UTR 0.69 TCGA-AR-A24H-01 12 132905608 132905608 T G RP13-895J2.7 5'Flank 0.38 TCGA-AR-A24H-01 12 132905684 132905684 C A RP13-895J2.7 5'Flank 0.30 TCGA-AR-A24H-01 12 2711019 2711019 G T CACNA1C Splice_Site p.X972_splice 0.36 TCGA-AR-A24H-01 12 31144889 31144898 ACATGTGGCC - TSPAN11 3'UTR 0.44 TCGA-AR-A24H-01 12 47172298 47172298 C G SLC38A4 Missense_Mutation p.V327L 0.31 tolerated(0.09) benign(0.032) TCGA-AR-A24H-01 12 54803355 54803355 A G ITGA5 Missense_Mutation p.S126P 0.67 tolerated(0.14) benign(0.343) TCGA-AR-A24H-01 12 56625219 56625219 C A SLC39A5 Missense_Mutation p.T54N 0.73 deleterious(0.01) possibly_damaging(0.642) TCGA-AR-A24H-01 12 70726585 70726585 G A CNOT2 Missense_Mutation p.G203E 0.40 deleterious(0.03) benign(0.231) TCGA-AR-A24H-01 12 95501370 95501370 C T FGD6 Missense_Mutation p.R1101Q 0.12 deleterious(0.02) probably_damaging(0.969) TCGA-AR-A24H-01 13 37453928 37453928 C A SMAD9 5'UTR 0.60 TCGA-AR-A24H-01 13 50204922 50204922 T A ARL11 Silent p.A113A 0.14 TCGA-AR-A24H-01 14 100384181 100384181 T C EML1 Silent p.T624T 0.38 TCGA-AR-A24H-01 14 100384182 100384182 G T EML1 Missense_Mutation p.G625W 0.38 deleterious(0) probably_damaging(1) TCGA-AR-A24H-01 14 106330033 106330033 C G IGHJ5 Missense_Mutation p.V14L 0.40 possibly_damaging(0.832) TCGA-AR-A24H-01 14 23566911 23566911 C A C14orf119 Missense_Mutation p.S15Y 0.59 deleterious_low_confidence(0) unknown(0) TCGA-AR-A24H-01 14 23891449 23891449 G A MYH7 Missense_Mutation p.T1062I 0.57 deleterious(0.01) benign(0.024) TCGA-AR-A24H-01 14 24877309 24877309 C G NYNRIN Missense_Mutation p.P145A 0.59 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-AR-A24H-01 14 33147618 33147618 G C AKAP6 Missense_Mutation p.K944N 0.58 deleterious(0.01) possibly_damaging(0.717) TCGA-AR-A24H-01 14 50998673 50998673 C A MAP4K5 Missense_Mutation p.G32V 0.25 deleterious(0) probably_damaging(0.999) TCGA-AR-A24H-01 14 61113081 61113081 C T SIX1 Missense_Mutation p.G259S 0.57 tolerated_low_confidence(0.95) benign(0) TCGA-AR-A24H-01 15 100636566 100636566 C T ADAMTS17 Missense_Mutation p.G711E 0.42 deleterious(0) probably_damaging(1) TCGA-AR-A24H-01 15 34064213 34064213 A T RYR3 Missense_Mutation p.N2970I 0.61 possibly_damaging(0.558) TCGA-AR-A24H-01 15 34635251 34635251 G C NOP10 Missense_Mutation p.N8K 0.58 tolerated(0.08) benign(0.373) TCGA-AR-A24H-01 15 42235331 42235331 G A EHD4 Silent p.L149L 0.42 TCGA-AR-A24H-01 16 19195047 19195047 G A SYT17 Missense_Mutation p.E177K 0.56 tolerated(0.05) benign(0.263) TCGA-AR-A24H-01 16 27483171 27483171 C A GTF3C1 Missense_Mutation p.S1475I 0.51 deleterious(0.01) probably_damaging(0.919) TCGA-AR-A24H-01 16 28549435 28549435 C T NUPR1 Missense_Mutation p.A70T 0.49 tolerated(0.59) benign(0.012) TCGA-AR-A24H-01 16 68330554 68330554 T A SLC7A6 Missense_Mutation p.F432I 0.73 deleterious(0) possibly_damaging(0.903) TCGA-AR-A24H-01 16 78064682 78064682 G A CLEC3A Missense_Mutation p.D189N 0.75 deleterious(0) probably_damaging(0.98) TCGA-AR-A24H-01 16 80577175 80577175 A C DYNLRB2 Silent p.A2A 0.68 TCGA-AR-A24H-01 17 10301949 10301949 G A MYH8 Silent p.N1330N 0.83 TCGA-AR-A24H-01 17 26574658 26574658 T G CTD-2008P7.8 RNA 0.35 TCGA-AR-A24H-01 17 33288605 33288605 C A ZNF830 Missense_Mutation p.A7D 0.13 deleterious(0.02) benign(0.074) TCGA-AR-A24H-01 17 36099431 36099431 G A HNF1B Nonsense_Mutation p.Q182* 0.29 TCGA-AR-A24H-01 17 37809976 37809976 C T STARD3 Silent p.I64I 0.41 TCGA-AR-A24H-01 17 42398003 42398003 C A SLC25A39 Missense_Mutation p.G263V 0.24 deleterious(0.03) benign(0.042) TCGA-AR-A24H-01 17 42474831 42474831 A T GPATCH8 3'UTR 0.16 TCGA-AR-A24H-01 17 45376772 45376772 A G ITGB3 Missense_Mutation p.N597D 0.14 tolerated(1) benign(0.001) TCGA-AR-A24H-01 17 47788904 47788909 CAGGAC - FAM117A In_Frame_Del p.G357_P358del 0.48 TCGA-AR-A24H-01 17 48913406 48913406 G A WFIKKN2 Silent p.P36P 0.43 TCGA-AR-A24H-01 17 62855994 62855994 C G LRRC37A3 Missense_Mutation p.E1424Q 0.37 tolerated(0.11) possibly_damaging(0.579) TCGA-AR-A24H-01 19 11258527 11258527 C T SPC24 Missense_Mutation p.D152N 0.71 deleterious(0) probably_damaging(1) TCGA-AR-A24H-01 19 11258533 11258533 C G SPC24 Missense_Mutation p.E150Q 0.71 tolerated(0.07) benign(0.098) TCGA-AR-A24H-01 19 42907078 42907078 C G LIPE Missense_Mutation p.G883A 0.37 tolerated(0.08) benign(0.103) TCGA-AR-A24H-01 19 43920373 43920373 A T TEX101 Missense_Mutation p.T81S 0.53 tolerated(0.56) benign(0.116) TCGA-AR-A24H-01 19 44619989 44619989 G A ZNF225 Silent p.T3T 0.26 TCGA-AR-A24H-01 19 49610881 49610881 G C SNRNP70 Splice_Site p.X193_splice 0.80 TCGA-AR-A24H-01 19 51628890 51628890 C A SIGLEC9 Missense_Mutation p.T153N 0.32 deleterious(0.02) probably_damaging(0.935) TCGA-AR-A24H-01 19 808581 808581 A G PTBP1 Missense_Mutation p.K428E 0.50 deleterious(0) possibly_damaging(0.848) TCGA-AR-A24H-01 1 109395170 109395170 A T AKNAD1 Missense_Mutation p.D39E 0.25 tolerated(0.21) benign(0.245) TCGA-AR-A24H-01 1 152882851 152882851 T G IVL Missense_Mutation p.L193R 0.43 tolerated(0.07) unknown(0) TCGA-AR-A24H-01 1 156914879 156914879 C A ARHGEF11 Missense_Mutation p.G975C 0.08 deleterious(0.01) possibly_damaging(0.504) TCGA-AR-A24H-01 1 156914880 156914880 C G ARHGEF11 Missense_Mutation p.E974D 0.09 tolerated(0.06) benign(0.055) TCGA-AR-A24H-01 1 157559026 157559026 C A FCRL4 Missense_Mutation p.R92L 0.12 tolerated(0.89) benign(0.001) TCGA-AR-A24H-01 1 158819056 158819056 C T MNDA 3'UTR 0.14 TCGA-AR-A24H-01 1 178834198 178834198 C A ANGPTL1 Missense_Mutation p.E238D 0.18 tolerated(0.26) benign(0.177) TCGA-AR-A24H-01 1 180886055 180886055 G T KIAA1614 Silent p.L272L 0.17 TCGA-AR-A24H-01 1 185270573 185270573 C G IVNS1ABP Missense_Mutation p.K296N 0.24 tolerated(0.09) benign(0.174) TCGA-AR-A24H-01 1 186036993 186036993 G A HMCN1 Missense_Mutation p.S2578N 0.23 benign(0.083) TCGA-AR-A24H-01 1 200613627 200613627 A G DDX59 Silent p.L539L 0.22 TCGA-AR-A24H-01 1 202418224 202418224 C - PPP1R12B Frame_Shift_Del p.N593Mfs*28 0.32 TCGA-AR-A24H-01 1 203144918 203144918 C T MYBPH 5'UTR 0.07 TCGA-AR-A24H-01 1 203154430 203154430 C T CHI3L1 Missense_Mutation p.D47N 0.17 deleterious(0.03) benign(0.05) TCGA-AR-A24H-01 1 204198106 204198106 C - PLEKHA6 Frame_Shift_Del p.E904Sfs*2 0.16 TCGA-AR-A24H-01 1 204230534 204230534 T A PLEKHA6 Missense_Mutation p.S142C 0.15 deleterious(0) probably_damaging(0.932) TCGA-AR-A24H-01 1 207287417 207287451 TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG - C4BPA Splice_Site p.X48_splice 0.55 TCGA-AR-A24H-01 1 207648368 207648368 T A CR2 Silent p.S841S 0.18 TCGA-AR-A24H-01 1 220870175 220870175 G T C1orf115 3'UTR 0.84 TCGA-AR-A24H-01 1 247751993 247751993 G C OR2G2 Missense_Mutation p.G111A 0.05 deleterious(0) probably_damaging(0.999) TCGA-AR-A24H-01 1 29314146 29314146 T A EPB41 Nonsense_Mutation p.L66* 0.73 TCGA-AR-A24H-01 1 46511674 46511674 G A PIK3R3 Missense_Mutation p.A368V 0.21 deleterious(0.04) probably_damaging(0.93) TCGA-AR-A24H-01 1 66827453 66827453 G - PDE4B Frame_Shift_Del p.E333Kfs*13 0.46 TCGA-AR-A24H-01 20 34241980 34241980 G C RBM12 Nonsense_Mutation p.S422* 0.50 TCGA-AR-A24H-01 20 35415036 35415036 G A SOGA1 Missense_Mutation p.A1613V 0.44 tolerated(0.39) benign(0.031) TCGA-AR-A24H-01 20 4773210 4773210 C T RASSF2 Silent p.E117E 0.20 TCGA-AR-A24H-01 20 50769649 50769649 T G ZFP64 Missense_Mutation p.H361P 0.51 deleterious(0) probably_damaging(0.993) TCGA-AR-A24H-01 21 45789136 45789136 G C TRPM2 Silent p.L227L 0.46 TCGA-AR-A24H-01 2 130932561 130932561 C A SMPD4 Missense_Mutation p.A57S 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.866) TCGA-AR-A24H-01 2 187693353 187693353 T A ZSWIM2 Missense_Mutation p.K420N 0.11 tolerated(0.32) benign(0.021) TCGA-AR-A24H-01 2 20512037 20512037 G A PUM2 Missense_Mutation p.P103L 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-AR-A24H-01 2 21251331 21251331 A G APOB Missense_Mutation p.M566T 0.31 possibly_damaging(0.516) TCGA-AR-A24H-01 2 21251332 21251332 T G APOB Missense_Mutation p.M566L 0.31 benign(0.081) TCGA-AR-A24H-01 2 32656007 32656007 A G BIRC6 Missense_Mutation p.T1033A 0.33 probably_damaging(0.97) TCGA-AR-A24H-01 2 47702380 47702380 A C MSH2 Missense_Mutation p.K659T 0.31 deleterious(0) possibly_damaging(0.864) TCGA-AR-A24H-01 2 55920943 55920943 A C PNPT1 Missense_Mutation p.Y6D 0.25 tolerated_low_confidence(0.2) benign(0.004) TCGA-AR-A24H-01 2 74177737 74177737 G C DGUOK Missense_Mutation p.E157Q 0.27 deleterious(0) probably_damaging(0.99) TCGA-AR-A24H-01 3 168819968 168819975 GCACTGAA - MECOM Frame_Shift_Del p.F759Pfs*4 0.41 TCGA-AR-A24H-01 3 183524710 183524710 C A YEATS2 Missense_Mutation p.Q1281K 0.42 deleterious(0.03) benign(0.437) TCGA-AR-A24H-01 3 196675280 196675280 G C PIGZ Missense_Mutation p.S163C 0.46 deleterious(0.01) benign(0.411) TCGA-AR-A24H-01 3 36899136 36899136 T C TRANK1 Missense_Mutation p.T649A 0.59 tolerated(0.51) benign(0) TCGA-AR-A24H-01 3 49136104 49136104 G A QARS Missense_Mutation p.R629C 0.75 deleterious(0.01) probably_damaging(1) TCGA-AR-A24H-01 3 51440606 51440606 T A VPRBP Missense_Mutation p.D1050V 0.41 tolerated_low_confidence(0.09) unknown(0) TCGA-AR-A24H-01 3 53326366 53326366 C A DCP1A Missense_Mutation p.Q372H 0.53 deleterious(0.03) benign(0.046) TCGA-AR-A24H-01 4 2065586 2065586 C T NAT8L Missense_Mutation p.S214F 0.67 deleterious(0) probably_damaging(0.998) TCGA-AR-A24H-01 4 2307216 2307216 C T ZFYVE28 Missense_Mutation p.R284Q 0.30 deleterious(0) probably_damaging(0.987) TCGA-AR-A24H-01 4 4322987 4322987 A T ZBTB49 Missense_Mutation p.T748S 0.17 deleterious(0.02) benign(0.382) TCGA-AR-A24H-01 4 85663022 85663022 C T WDFY3 Silent p.V2042V 0.52 TCGA-AR-A24H-01 4 94436426 94436426 C T GRID2 Missense_Mutation p.A686V 0.44 deleterious(0) probably_damaging(0.978) TCGA-AR-A24H-01 5 121780266 121780266 T A SNCAIP Silent p.V477V 0.26 TCGA-AR-A24H-01 5 140256083 140256083 C T PCDHA12 Silent p.D342D 0.29 TCGA-AR-A24H-01 5 140811837 140811837 A C PCDHGA12 Missense_Mutation p.Y504S 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AR-A24H-01 5 156565934 156565934 G C MED7 Missense_Mutation p.S170C 0.46 deleterious(0.01) probably_damaging(0.94) TCGA-AR-A24H-01 5 179043215 179043215 G A HNRNPH1 Silent p.N404N 0.19 TCGA-AR-A24H-01 5 179280249 179280249 G C C5orf45 Intron 0.58 TCGA-AR-A24H-01 6 110942346 110942346 G C CDK19 Silent p.G446G 0.21 TCGA-AR-A24H-01 6 111694984 111694984 G C REV3L Missense_Mutation p.S1525C 0.30 deleterious(0) probably_damaging(0.999) TCGA-AR-A24H-01 6 117249959 117249959 C G RFX6 Missense_Mutation p.H812Q 0.32 tolerated_low_confidence(0.55) benign(0.005) TCGA-AR-A24H-01 6 152464831 152464831 A C SYNE1 Missense_Mutation p.I8349R 0.15 benign(0.009) TCGA-AR-A24H-01 6 166831734 166831734 G T RPS6KA2 Missense_Mutation p.D647E 0.40 tolerated(0.3) benign(0.009) TCGA-AR-A24H-01 6 170176590 170176590 T A ERMARD Silent p.V520V 0.12 TCGA-AR-A24H-01 6 31660923 31660923 C G ABHD16A Missense_Mutation p.K169N 0.58 tolerated(0.18) benign(0.007) TCGA-AR-A24H-01 6 31685496 31685496 T G LY6G6D Missense_Mutation p.V106G 0.52 deleterious(0.03) possibly_damaging(0.504) TCGA-AR-A24H-01 6 43607982 43607982 G C MAD2L1BP Missense_Mutation p.Q211H 0.52 deleterious(0.04) probably_damaging(0.954) TCGA-AR-A24H-01 6 47846834 47846835 - T PTCHD4 Frame_Shift_Ins p.P583Afs*9 0.28 TCGA-AR-A24H-01 6 9903619 9903619 T C OFCC1 Intron 0.09 TCGA-AR-A24H-01 7 100245120 100245120 T A ACTL6B Nonsense_Mutation p.K236* 0.44 TCGA-AR-A24H-01 7 115889294 115889294 G A TES Missense_Mutation p.E112K 0.53 deleterious(0.01) possibly_damaging(0.859) TCGA-AR-A24H-01 7 148768278 148768278 C G ZNF786 Missense_Mutation p.R529T 0.50 deleterious(0) probably_damaging(0.965) TCGA-AR-A24H-01 7 1784270 1784294 TGGCGGCCGCCACCCTGCTGCACGC - ELFN1 Frame_Shift_Del p.A16Wfs*8 0.50 TCGA-AR-A24H-01 7 22190031 22190039 GTCCGCCAG - RAPGEF5 In_Frame_Del p.L471_D473del 0.32 TCGA-AR-A24H-01 7 29433303 29433303 C G CHN2 Missense_Mutation p.N51K 0.21 tolerated(0.09) benign(0.039) TCGA-AR-A24H-01 7 35242254 35242254 G C TBX20 Missense_Mutation p.P378A 0.23 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-AR-A24H-01 7 55219021 55219021 C T EGFR Silent p.S198S 0.25 TCGA-AR-A24H-01 7 75959386 75959386 C T YWHAG Silent p.A84A 0.51 TCGA-AR-A24H-01 7 87168661 87168661 C T ABCB1 Missense_Mutation p.G774S 0.46 tolerated(0.08) probably_damaging(0.984) TCGA-AR-A24H-01 8 106814376 106814376 G C ZFPM2 Missense_Mutation p.C689S 0.26 deleterious(0) probably_damaging(0.999) TCGA-AR-A24H-01 8 118183309 118183318 AGCTTATTTT - SLC30A8 Frame_Shift_Del p.L290Qfs*16 0.16 TCGA-AR-A24H-01 8 119391733 119391733 C G SAMD12 Missense_Mutation p.G177R 0.45 tolerated_low_confidence(0.58) benign(0.004) TCGA-AR-A24H-01 8 125074185 125074185 C T FER1L6 Silent p.Y1080Y 0.16 TCGA-AR-A24H-01 8 48839765 48839765 G T PRKDC Nonsense_Mutation p.S803* 0.53 TCGA-AR-A24H-01 8 61773585 61773585 G C CHD7 Silent p.G2577G 0.44 TCGA-AR-A24H-01 8 67793181 67793181 A G MCMDC2 Silent p.A269A 0.28 TCGA-AR-A24H-01 9 107379675 107379675 C T OR13C9 Missense_Mutation p.D271N 0.22 tolerated(0.07) benign(0.024) TCGA-AR-A24H-01 9 109689052 109689052 C A ZNF462 Silent p.I953I 0.11 TCGA-AR-A24H-01 9 113066787 113066787 C A TXNDC8 Missense_Mutation p.R94I 0.42 deleterious(0) probably_damaging(0.962) TCGA-AR-A24H-01 9 113208280 113208288 CAGAAACTT - SVEP1 In_Frame_Del p.E1431_S1433del 0.36 TCGA-AR-A24H-01 9 140114992 140114992 C T RNF208 Missense_Mutation p.G225S 0.36 tolerated(0.83) possibly_damaging(0.756) TCGA-AR-A24H-01 9 35801760 35801760 G A NPR2 Silent p.L519L 0.18 TCGA-AR-A24H-01 9 35870175 35870175 G C OR13J1 Missense_Mutation p.P75R 0.22 deleterious(0) benign(0.001) TCGA-AR-A24H-01 9 97082784 97082784 C G NUTM2F Silent p.L358L 0.11 TCGA-AR-A24H-01 X 100531448 100531448 C T TAF7L Missense_Mutation p.D340N 0.54 tolerated(0.15) benign(0.212) TCGA-AR-A24H-01 X 101971743 101971743 A T GPRASP2 Missense_Mutation p.Y649F 0.50 tolerated(0.13) benign(0.33) TCGA-AR-A24H-01 X 153993196 153993196 T G DKC1 Missense_Mutation p.H13Q 0.47 tolerated_low_confidence(0.12) benign(0.11) TCGA-AR-A24H-01 X 1558027 1558027 C T ASMTL Missense_Mutation p.R79Q 0.18 tolerated(0.06) benign(0.3) TCGA-AR-A24H-01 X 18664154 18664154 G C CDKL5 Missense_Mutation p.R914T 0.53 deleterious_low_confidence(0) benign(0.227) TCGA-AR-A24H-01 X 30578016 30578016 C T CXorf21 Missense_Mutation p.G153S 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-AR-A24H-01 X 47308257 47308257 G C ZNF41 Missense_Mutation p.S304R 0.50 deleterious(0.01) benign(0.006) TCGA-AR-A24H-01 X 48672886 48672886 G T HDAC6 Missense_Mutation p.R282S 0.53 tolerated(0.77) benign(0.224) TCGA-AR-A24H-01 X 74289263 74289263 C A ABCB7 Missense_Mutation p.Q465H 0.73 tolerated(0.22) benign(0.002) TCGA-AR-A24H-01 X 96603145 96603145 G C DIAPH2 Missense_Mutation p.E959Q 0.77 tolerated(0.13) probably_damaging(0.989) TCGA-AR-A24K-01 10 75834570 75834570 A G VCL Missense_Mutation p.N231S 0.33 deleterious(0.03) benign(0.062) TCGA-AR-A24K-01 11 66460727 66460727 C T SPTBN2 Missense_Mutation p.R1595H 0.22 deleterious(0.05) possibly_damaging(0.829) TCGA-AR-A24K-01 12 104100711 104100711 G A STAB2 Missense_Mutation p.G1380S 0.29 deleterious(0) probably_damaging(1) TCGA-AR-A24K-01 12 83444707 83444707 G A TMTC2 Missense_Mutation p.R726H 0.58 deleterious(0) probably_damaging(0.991) TCGA-AR-A24K-01 12 91347459 91347459 C T CCER1 Missense_Mutation p.G354E 0.29 tolerated(1) unknown(0) TCGA-AR-A24K-01 15 65622726 65622726 G A IGDCC3 Missense_Mutation p.A588V 0.19 tolerated(0.4) benign(0.02) TCGA-AR-A24K-01 15 90617396 90617396 C A ZNF710 Missense_Mutation p.H567N 0.16 deleterious(0) probably_damaging(0.932) TCGA-AR-A24K-01 17 15973477 15973477 A G NCOR1 Splice_Site p.X1505_splice 0.73 TCGA-AR-A24K-01 17 66920927 66920927 G T ABCA8 Missense_Mutation p.L453I 0.38 tolerated(0.31) benign(0.403) TCGA-AR-A24K-01 17 7579360 7579361 - AA TP53 Frame_Shift_Ins p.R110Sfs*14 0.85 TCGA-AR-A24K-01 17 8660619 8660619 C T SPDYE4 Missense_Mutation p.V101M 0.53 deleterious(0.04) benign(0.369) TCGA-AR-A24K-01 19 18304729 18304729 G A MPV17L2 Silent p.L81L 0.33 TCGA-AR-A24K-01 19 34263642 34263642 G A CHST8 Missense_Mutation p.D317N 0.40 deleterious(0) possibly_damaging(0.896) TCGA-AR-A24K-01 19 39397862 39397862 C A NFKBIB Silent p.G207G 0.18 TCGA-AR-A24K-01 19 3983150 3983150 G C EEF2 Missense_Mutation p.R120G 0.35 deleterious(0) probably_damaging(0.999) TCGA-AR-A24K-01 19 41704416 41704416 A T CYP2S1 Silent p.V181V 0.38 TCGA-AR-A24K-01 19 45404540 45404540 C A TOMM40 Missense_Mutation p.L307M 0.12 deleterious(0) possibly_damaging(0.842) TCGA-AR-A24K-01 19 53770069 53770069 C T VN1R4 Missense_Mutation p.V284I 0.41 tolerated(0.75) benign(0.03) TCGA-AR-A24K-01 1 149859025 149859025 C G HIST2H2AB 3'UTR 0.09 TCGA-AR-A24K-01 1 16262183 16262183 C G SPEN Missense_Mutation p.L3150V 0.27 benign(0.254) TCGA-AR-A24K-01 1 17701986 17701986 C G PADI6 RNA 0.50 TCGA-AR-A24K-01 20 17641006 17641006 C T RRBP1 Missense_Mutation p.M49I 0.66 deleterious(0.01) possibly_damaging(0.53) TCGA-AR-A24K-01 22 19442113 19442113 C T UFD1L Intron 0.67 TCGA-AR-A24K-01 2 99778927 99778927 C T LIPT1 Silent p.I169I 0.50 TCGA-AR-A24K-01 3 178921567 178921567 A G PIK3CA Missense_Mutation p.D350G 0.39 deleterious(0.01) possibly_damaging(0.646) TCGA-AR-A24K-01 3 19295241 19295241 A G KCNH8 Missense_Mutation p.T58A 0.39 tolerated(0.85) benign(0.095) TCGA-AR-A24K-01 3 50253169 50253169 C T SLC38A3 Intron 0.31 TCGA-AR-A24K-01 3 53223092 53223092 T A PRKCD Missense_Mutation p.Y525N 0.36 deleterious(0) probably_damaging(1) TCGA-AR-A24K-01 4 110925680 110925680 A G EGF Missense_Mutation p.K1065E 0.42 tolerated(0.11) benign(0.03) TCGA-AR-A24K-01 7 116399515 116399515 G A MET Missense_Mutation p.V797M 0.40 tolerated(0.06) probably_damaging(0.975) TCGA-AR-A24K-01 7 133842882 133842882 A G LRGUK Silent p.L255L 0.14 TCGA-AR-A24K-01 8 116616565 116616565 C T TRPS1 Missense_Mutation p.R544Q 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AR-A24K-01 8 139144755 139144755 G T FAM135B 3'UTR 0.63 TCGA-AR-A24K-01 8 75756324 75756324 C T PI15 Missense_Mutation p.R128C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A24K-01 9 135172419 135172419 T C SETX Missense_Mutation p.N1935S 0.80 deleterious(0) probably_damaging(1) TCGA-AR-A24L-01 10 126631615 126631615 T A ZRANB1 Missense_Mutation p.L185M 0.09 tolerated(0.16) benign(0.365) TCGA-AR-A24L-01 10 135020480 135020480 T A KNDC1 Intron 0.16 TCGA-AR-A24L-01 11 123848195 123848195 G T OR10S1 Silent p.L68L 0.38 TCGA-AR-A24L-01 11 55587193 55587193 C T OR5D18 Silent p.L30L 0.07 TCGA-AR-A24L-01 11 55587206 55587206 C T OR5D18 Missense_Mutation p.A34V 0.07 tolerated(0.74) benign(0.001) TCGA-AR-A24L-01 11 76903324 76903324 G T MYO7A Splice_Site p.X1384_splice 0.31 TCGA-AR-A24L-01 11 8670021 8670021 C G TRIM66 Missense_Mutation p.E78Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-AR-A24L-01 11 94331003 94331003 G C PIWIL4 Missense_Mutation p.W434C 0.42 deleterious(0) probably_damaging(0.971) TCGA-AR-A24L-01 12 112614406 112614407 - T HECTD4 Frame_Shift_Ins p.Q3676Tfs*5 0.14 TCGA-AR-A24L-01 12 85680747 85680747 C A ALX1 Missense_Mutation p.D216E 0.34 tolerated(0.51) benign(0.029) TCGA-AR-A24L-01 14 102285424 102285424 T C PPP2R5C Splice_Site p.X63_splice 0.42 TCGA-AR-A24L-01 14 105413008 105413008 C A AHNAK2 Missense_Mutation p.G2927V 0.05 benign(0.013) TCGA-AR-A24L-01 14 94953679 94953679 C G SERPINA12 Silent p.V402V 0.42 TCGA-AR-A24L-01 15 78927917 78927917 A G CHRNB4 Missense_Mutation p.V23A 0.24 tolerated(1) benign(0.001) TCGA-AR-A24L-01 15 89424727 89424727 G A HAPLN3 Silent p.R118R 0.19 TCGA-AR-A24L-01 16 335197 335197 C G PDIA2 Missense_Mutation p.S264R 0.07 tolerated(0.14) benign(0.315) TCGA-AR-A24L-01 16 775286 775286 G A CCDC78 Missense_Mutation p.P148L 0.23 deleterious(0.03) benign(0.102) TCGA-AR-A24L-01 17 38176104 38176104 C T MED24 Silent p.E929E 0.52 TCGA-AR-A24L-01 18 52899822 52899822 G C TCF4 Missense_Mutation p.L625V 0.23 tolerated(0.26) benign(0.032) TCGA-AR-A24L-01 19 17728543 17728543 A G UNC13A Missense_Mutation p.I1509T 0.26 deleterious(0) possibly_damaging(0.731) TCGA-AR-A24L-01 19 39214317 39214317 G C ACTN4 Missense_Mutation p.W502C 0.15 deleterious(0) probably_damaging(0.999) TCGA-AR-A24L-01 1 111435055 111435055 C G CD53 Missense_Mutation p.T51R 0.32 deleterious(0) possibly_damaging(0.889) TCGA-AR-A24L-01 1 11591069 11591069 G A PTCHD2 Missense_Mutation p.G1070R 0.29 deleterious(0) possibly_damaging(0.885) TCGA-AR-A24L-01 1 117618034 117618034 G C TTF2 Missense_Mutation p.Q276H 0.25 tolerated(0.06) possibly_damaging(0.503) TCGA-AR-A24L-01 1 157805923 157805923 C A CD5L Silent p.L26L 0.26 TCGA-AR-A24L-01 1 168044671 168044671 T A DCAF6 Nonstop_Mutation p.*952Kext*1 0.29 TCGA-AR-A24L-01 1 21083681 21083681 T C HP1BP3 Missense_Mutation p.K320R 0.10 deleterious(0) probably_damaging(0.995) TCGA-AR-A24L-01 1 235346022 235346032 TCTTAGATTCC - ARID4B Frame_Shift_Del p.E734Dfs*2 0.24 TCGA-AR-A24L-01 20 1961218 1961218 G C PDYN Silent p.V172V 0.28 TCGA-AR-A24L-01 20 32868859 32868859 G A AHCY Missense_Mutation p.P427L 0.14 tolerated_low_confidence(0.06) benign(0.315) TCGA-AR-A24L-01 20 37177413 37177413 C G RALGAPB Missense_Mutation p.P995R 0.17 deleterious(0) probably_damaging(1) TCGA-AR-A24L-01 20 9498735 9498735 C G LAMP5 Missense_Mutation p.P175R 0.37 deleterious(0) probably_damaging(0.998) TCGA-AR-A24L-01 22 28195783 28195783 G C MN1 Missense_Mutation p.S250C 0.33 possibly_damaging(0.694) TCGA-AR-A24L-01 2 101087011 101087011 C T NMS Nonsense_Mutation p.Q21* 0.33 TCGA-AR-A24L-01 2 183088590 183088590 C - PDE1A Splice_Site p.X275_splice 0.26 TCGA-AR-A24L-01 2 198368081 198368081 A G HSPE1 3'UTR 0.40 TCGA-AR-A24L-01 2 21245741 21245741 A C APOB Missense_Mutation p.I926M 0.29 possibly_damaging(0.867) TCGA-AR-A24L-01 2 68613653 68613653 G T PLEK Missense_Mutation p.W164C 0.24 deleterious(0) probably_damaging(0.996) TCGA-AR-A24L-01 3 112357487 112357487 C T CCDC80 Silent p.Q422Q 0.29 TCGA-AR-A24L-01 3 142030500 142030500 C A XRN1 Silent p.P1658P 0.05 TCGA-AR-A24L-01 3 185783746 185783746 G A ETV5 Missense_Mutation p.P256S 0.24 tolerated(0.07) benign(0.138) TCGA-AR-A24L-01 3 41942265 41942265 G A ULK4 Silent p.I413I 0.19 TCGA-AR-A24L-01 4 103501694 103501694 G A NFKB1 Missense_Mutation p.A245T 0.16 deleterious(0) possibly_damaging(0.563) TCGA-AR-A24L-01 4 155507138 155507138 T G FGA Missense_Mutation p.E481D 0.12 deleterious(0.01) possibly_damaging(0.454) TCGA-AR-A24L-01 4 165961691 165961691 A G TRIM60 Missense_Mutation p.E156G 0.46 deleterious(0.03) possibly_damaging(0.543) TCGA-AR-A24L-01 5 175387038 175387038 G A THOC3 Silent p.D330D 0.35 TCGA-AR-A24L-01 6 35262260 35262260 G T ZNF76 Missense_Mutation p.V508L 0.13 tolerated(0.2) benign(0.008) TCGA-AR-A24L-01 7 149503942 149503942 C T SSPO RNA 0.15 TCGA-AR-A24L-01 7 99171004 99171004 C A ZNF655 Missense_Mutation p.Q460K 0.09 tolerated(0.59) benign(0.092) TCGA-AR-A24L-01 8 101206593 101206593 C T SPAG1 Intron 0.25 TCGA-AR-A24L-01 8 110464392 110464392 C A PKHD1L1 Silent p.A2130A 0.29 TCGA-AR-A24L-01 8 119936866 119936866 G C TNFRSF11B Missense_Mutation p.A318G 0.23 deleterious(0.05) benign(0.077) TCGA-AR-A24L-01 9 130742440 130742440 C - FAM102A 5'UTR 0.29 TCGA-AR-A24L-01 9 139566522 139566522 G C EGFL7 Missense_Mutation p.E261Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-AR-A24L-01 9 139635441 139635441 G C LCN10 Intron 0.09 TCGA-AR-A24L-01 9 35612972 35612972 C G CD72 Missense_Mutation p.G236A 0.24 tolerated(0.08) possibly_damaging(0.607) TCGA-AR-A24L-01 X 73959204 73959204 C T KIAA2022 3'UTR 0.37 TCGA-AR-A24M-01 11 132184654 132184654 C A NTM Intron 0.27 TCGA-AR-A24M-01 11 610248 610248 G C PHRF1 Missense_Mutation p.E1438D 0.24 tolerated(0.1) possibly_damaging(0.801) TCGA-AR-A24M-01 11 94209462 94209462 G T MRE11A Missense_Mutation p.Q218K 0.40 deleterious(0) probably_damaging(1) TCGA-AR-A24M-01 12 250247 250247 C T IQSEC3 Intron 0.52 TCGA-AR-A24M-01 13 97999169 97999169 T A MBNL2 Missense_Mutation p.C218S 0.57 deleterious(0) probably_damaging(0.993) TCGA-AR-A24M-01 14 38277943 38277943 T C TTC6 Silent p.Y1487Y 0.37 TCGA-AR-A24M-01 16 2093638 2093638 C T NTHL1 Silent p.A213A 0.50 TCGA-AR-A24M-01 16 2345722 2345722 C T ABCA3 Silent p.T761T 0.23 TCGA-AR-A24M-01 19 44008076 44008076 A G PHLDB3 Silent p.T65T 0.26 TCGA-AR-A24M-01 1 17273292 17273292 C T CROCC Missense_Mutation p.R774W 0.40 probably_damaging(0.968) TCGA-AR-A24M-01 1 197390446 197390446 C A CRB1 Silent p.V496V 0.16 TCGA-AR-A24M-01 1 242383361 242383361 A G PLD5 Missense_Mutation p.S222P 0.13 tolerated(0.06) probably_damaging(0.976) TCGA-AR-A24M-01 1 32800612 32800612 G A MARCKSL1 Silent p.A58A 0.55 TCGA-AR-A24M-01 1 41220041 41220042 AC T NFYC Intron 0.25 TCGA-AR-A24M-01 1 45270401 45270401 C A PLK3 Missense_Mutation p.L529M 0.36 tolerated(0.51) benign(0.178) TCGA-AR-A24M-01 2 1094038 1094038 G T SNTG2 Splice_Site p.X90_splice 0.34 TCGA-AR-A24M-01 3 121416508 121416508 C T GOLGB1 Silent p.V954V 0.44 TCGA-AR-A24M-01 3 140675496 140675496 A G SLC25A36 Missense_Mutation p.N57D 0.39 tolerated(0.64) benign(0.102) TCGA-AR-A24M-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.41 deleterious(0.04) probably_damaging(0.96) TCGA-AR-A24M-01 4 154191510 154191510 A G TRIM2 Silent p.T18T 0.46 TCGA-AR-A24M-01 4 71555017 71555017 C T UTP3 Missense_Mutation p.A208V 0.15 tolerated(0.16) benign(0.028) TCGA-AR-A24M-01 5 16463793 16463793 G A ZNF622 Silent p.D228D 0.31 TCGA-AR-A24M-01 5 67590467 67590467 A T PIK3R1 Missense_Mutation p.E510V 0.33 deleterious(0) possibly_damaging(0.803) TCGA-AR-A24M-01 5 76989106 76989106 A G TBCA Silent p.D77D 0.08 TCGA-AR-A24M-01 6 44224107 44224107 T - SLC35B2 Frame_Shift_Del p.K111Sfs*14 0.53 TCGA-AR-A24M-01 6 44224110 44224110 A T SLC35B2 Missense_Mutation p.L110Q 0.55 deleterious(0.01) possibly_damaging(0.707) TCGA-AR-A24M-01 7 24839773 24839773 C A OSBPL3 3'UTR 0.22 TCGA-AR-A24N-01 10 134898410 134898410 C A GPR123 5'Flank 0.43 TCGA-AR-A24N-01 11 1251806 1251806 G A MUC5B Silent p.T482T 0.55 TCGA-AR-A24N-01 11 5530467 5530467 G A UBQLN3 Missense_Mutation p.P108S 0.25 tolerated(0.34) benign(0.043) TCGA-AR-A24N-01 11 63141114 63141114 A T SLC22A9 Splice_Site p.X169_splice 0.33 TCGA-AR-A24N-01 11 68031210 68031210 C G C11orf24 Missense_Mutation p.W9S 0.24 deleterious(0) unknown(0) TCGA-AR-A24N-01 12 125396630 125396631 - G UBC Frame_Shift_Ins p.Q563Pfs*9 0.27 TCGA-AR-A24N-01 12 21639494 21639494 C T RECQL Silent p.L140L 0.47 TCGA-AR-A24N-01 12 5154181 5154181 C A KCNA5 Missense_Mutation p.Q290K 0.38 tolerated(0.95) benign(0.033) TCGA-AR-A24N-01 14 55169153 55169153 G T SAMD4A Missense_Mutation p.W190C 0.54 deleterious(0) probably_damaging(0.999) TCGA-AR-A24N-01 14 97299833 97299833 G A VRK1 Missense_Mutation p.A9T 0.41 tolerated(0.08) benign(0.001) TCGA-AR-A24N-01 15 50557895 50557895 G A HDC 5'UTR 0.41 TCGA-AR-A24N-01 16 4924371 4924371 C T UBN1 Missense_Mutation p.P654S 0.22 tolerated(0.42) benign(0.005) TCGA-AR-A24N-01 16 731865 731865 C T STUB1 Silent p.C199C 0.54 TCGA-AR-A24N-01 16 74419288 74419288 T C NPIPB15 Missense_Mutation p.S100P 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AR-A24N-01 17 36977158 36977158 C T CWC25 Missense_Mutation p.V63I 0.36 tolerated(0.19) benign(0.005) TCGA-AR-A24N-01 17 48913343 48913343 G T WFIKKN2 Missense_Mutation p.Q15H 0.35 tolerated_low_confidence(0.59) benign(0.078) TCGA-AR-A24N-01 17 79526303 79526303 G A NPLOC4 Silent p.C603C 0.17 TCGA-AR-A24N-01 17 80525932 80525932 C T FOXK2 Missense_Mutation p.A206V 0.44 tolerated(0.43) possibly_damaging(0.533) TCGA-AR-A24N-01 19 21719514 21719514 A G ZNF429 Missense_Mutation p.K220R 0.19 tolerated(0.11) benign(0.012) TCGA-AR-A24N-01 19 44891754 44891754 G A ZNF285 Missense_Mutation p.T218M 0.30 tolerated(0.06) benign(0.374) TCGA-AR-A24N-01 19 50091757 50091757 G A PRRG2 Missense_Mutation p.R102H 0.26 tolerated(0.2) benign(0.004) TCGA-AR-A24N-01 19 51165718 51165718 C T SHANK1 Missense_Mutation p.R1997Q 0.35 unknown(0) TCGA-AR-A24N-01 19 57908526 57908526 C T ZNF548 Silent p.A54A 0.43 TCGA-AR-A24N-01 1 114516067 114516067 G A HIPK1 Missense_Mutation p.R1189Q 0.36 tolerated(0.15) possibly_damaging(0.545) TCGA-AR-A24N-01 1 155034985 155034985 C T ADAM15 3'UTR 0.72 TCGA-AR-A24N-01 1 223971901 223971901 G C TP53BP2 Missense_Mutation p.I1093M 0.67 deleterious(0.03) benign(0.011) TCGA-AR-A24N-01 1 247655187 247655187 G A OR2W5 RNA 0.14 TCGA-AR-A24N-01 1 72241932 72241932 C T NEGR1 Missense_Mutation p.G153E 0.45 deleterious(0) probably_damaging(0.999) TCGA-AR-A24N-01 20 36776418 36776418 C T TGM2 Missense_Mutation p.R209H 0.27 tolerated(0.07) benign(0.116) TCGA-AR-A24N-01 20 50048992 50048992 C T NFATC2 Silent p.A778A 0.38 TCGA-AR-A24N-01 22 17669277 17669277 C T CECR1 Missense_Mutation p.A345T 0.15 tolerated(0.4) benign(0.004) TCGA-AR-A24N-01 2 179471754 179471754 G T TTN Missense_Mutation p.P17859T 0.28 TCGA-AR-A24N-01 3 112693860 112693860 T C CD200R1 5'UTR 0.20 TCGA-AR-A24N-01 3 121980881 121980881 C T CASR Silent p.F333F 0.14 TCGA-AR-A24N-01 4 120193097 120193097 C T USP53 Silent p.I694I 0.40 TCGA-AR-A24N-01 5 120022380 120022380 G A PRR16 Silent p.R274R 0.50 TCGA-AR-A24N-01 5 140802650 140802650 C T PCDHGA11 Missense_Mutation p.A619V 0.33 tolerated_low_confidence(0.24) benign(0.048) TCGA-AR-A24N-01 6 132910027 132910027 G A TAAR5 Missense_Mutation p.P267S 0.18 deleterious(0.02) benign(0.15) TCGA-AR-A24N-01 6 57013435 57013435 C A ZNF451 Nonsense_Mutation p.S851* 0.38 TCGA-AR-A24N-01 7 151860728 151860728 G A KMT2C Nonsense_Mutation p.Q3312* 0.42 TCGA-AR-A24N-01 8 11189209 11189209 G T SLC35G5 Silent p.L198L 0.22 TCGA-AR-A24N-01 8 121381598 121381598 C T COL14A1 Missense_Mutation p.P1729S 0.08 deleterious(0.04) benign(0.063) TCGA-AR-A24N-01 8 126056088 126056088 C T KIAA0196 Silent p.A943A 0.15 TCGA-AR-A24N-01 8 140714982 140714982 T C KCNK9 Missense_Mutation p.Y85C 0.17 deleterious(0) probably_damaging(0.987) TCGA-AR-A24N-01 8 144732952 144732952 T C ZNF623 Missense_Mutation p.S304P 0.74 deleterious(0.01) possibly_damaging(0.592) TCGA-AR-A24N-01 9 140865931 140865931 G A CACNA1B Missense_Mutation p.R477H 0.40 tolerated(0.25) benign(0.065) TCGA-AR-A24N-01 9 72338428 72338428 T C PTAR1 Missense_Mutation p.D254G 0.11 deleterious(0.01) benign(0.017) TCGA-AR-A24N-01 X 100668309 100668309 C T HNRNPH2 Nonsense_Mutation p.Q445* 0.45 TCGA-AR-A24O-01 10 125514209 125514209 C T CPXM2 Missense_Mutation p.V663I 0.27 tolerated(0.08) benign(0.099) TCGA-AR-A24O-01 11 73075586 73075586 C T ARHGEF17 Silent p.L1831L 0.15 TCGA-AR-A24O-01 12 105605050 105605050 T C APPL2 Missense_Mutation p.M111V 0.09 tolerated(0.07) probably_damaging(0.993) TCGA-AR-A24O-01 12 250257 250257 C T IQSEC3 Intron 0.38 TCGA-AR-A24O-01 12 48482684 48482684 C T SENP1 Missense_Mutation p.A94T 0.22 tolerated_low_confidence(0.14) benign(0.048) TCGA-AR-A24O-01 13 107145608 107145608 G A EFNB2 Missense_Mutation p.P261L 0.11 tolerated(0.09) possibly_damaging(0.862) TCGA-AR-A24O-01 13 113212589 113212589 C T TUBGCP3 Missense_Mutation p.V157M 0.21 tolerated(0.35) benign(0.001) TCGA-AR-A24O-01 14 38061463 38061463 T C FOXA1 Missense_Mutation p.I176V 0.12 deleterious(0) probably_damaging(0.98) TCGA-AR-A24O-01 16 3363109 3363109 G A ZNF75A Missense_Mutation p.D12N 0.11 deleterious(0.03) benign(0.068) TCGA-AR-A24O-01 17 7217863 7217870 TCTCCTGT - GPS2 Frame_Shift_Del p.Q48Kfs*46 0.26 TCGA-AR-A24O-01 1 220091665 220091665 G A SLC30A10 Missense_Mutation p.P297L 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A24O-01 20 40065975 40065975 C G CHD6 Splice_Site p.X1336_splice 0.24 TCGA-AR-A24O-01 21 40601356 40601356 C A BRWD1 Nonsense_Mutation p.E1003* 0.11 TCGA-AR-A24O-01 2 225661753 225661753 G C DOCK10 Silent p.A1585A 0.12 TCGA-AR-A24O-01 3 127642036 127642036 C T KBTBD12 Silent p.C44C 0.11 TCGA-AR-A24O-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.21 tolerated(0.44) benign(0.085) TCGA-AR-A24O-01 3 195968901 195968901 A C PCYT1A Missense_Mutation p.I209S 0.11 deleterious(0) probably_damaging(0.995) TCGA-AR-A24O-01 5 170883788 170883788 C A FGF18 Silent p.I201I 0.23 TCGA-AR-A24O-01 6 26234971 26234971 T C HIST1H1D Missense_Mutation p.K64R 0.21 deleterious(0) probably_damaging(0.999) TCGA-AR-A24O-01 7 48312670 48312670 G A ABCA13 Missense_Mutation p.S1136N 0.08 benign(0.015) TCGA-AR-A24O-01 8 110454342 110454342 T C PKHD1L1 Silent p.Y1437Y 0.24 TCGA-AR-A24O-01 8 133142164 133142164 G A KCNQ3 Missense_Mutation p.T655M 0.27 deleterious(0.04) benign(0.031) TCGA-AR-A24O-01 X 17705913 17705913 C T NHS Missense_Mutation p.P206L 0.23 deleterious(0) possibly_damaging(0.559) TCGA-AR-A24P-01 10 114192251 114192251 C T ZDHHC6 Missense_Mutation p.S325N 0.40 tolerated(0.3) benign(0.011) TCGA-AR-A24P-01 10 50013339 50013339 G C WDFY4 Missense_Mutation p.A1507P 0.20 deleterious(0.03) possibly_damaging(0.623) TCGA-AR-A24P-01 10 8111494 8111494 T A GATA3 Missense_Mutation p.L328H 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A24P-01 12 53663422 53663422 G A ESPL1 Silent p.L232L 0.46 TCGA-AR-A24P-01 14 23855661 23855661 G A MYH6 Missense_Mutation p.R1608C 0.46 deleterious(0) probably_damaging(0.992) TCGA-AR-A24P-01 14 89039040 89039040 G A ZC3H14 Missense_Mutation p.E184K 0.20 deleterious(0) possibly_damaging(0.733) TCGA-AR-A24P-01 15 74707257 74707257 G A SEMA7A Silent p.L339L 0.36 TCGA-AR-A24P-01 16 67070577 67070578 - T CBFB Frame_Shift_Ins p.P70Sfs*13 0.52 TCGA-AR-A24P-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.41 deleterious(0) probably_damaging(0.992) TCGA-AR-A24P-01 19 43979553 43979554 - G PHLDB3 3'UTR 0.40 TCGA-AR-A24P-01 1 12387893 12387893 G C VPS13D Missense_Mutation p.A2727P 0.31 probably_damaging(0.998) TCGA-AR-A24P-01 1 12939485 12939485 C A PRAMEF4 Missense_Mutation p.E439D 0.30 deleterious(0.05) benign(0.021) TCGA-AR-A24P-01 1 159857798 159857798 C T CCDC19 Missense_Mutation p.A141T 0.18 deleterious(0.01) benign(0.049) TCGA-AR-A24P-01 1 185276771 185276771 A T IVNS1ABP Silent p.S127S 0.49 TCGA-AR-A24P-01 2 197662520 197662520 C T GTF3C3 Splice_Site p.X72_splice 0.44 TCGA-AR-A24P-01 2 99256673 99256676 TCTG - MGAT4A Frame_Shift_Del p.Q346Kfs*35 0.66 TCGA-AR-A24P-01 4 83350516 83350516 G A HNRNPDL Nonsense_Mutation p.Q110* 0.28 TCGA-AR-A24P-01 5 94772583 94772583 G A FAM81B Missense_Mutation p.R289H 0.22 tolerated(0.97) benign(0.003) TCGA-AR-A24P-01 8 22865082 22865082 G A RHOBTB2 Missense_Mutation p.E464K 0.29 tolerated(0.25) possibly_damaging(0.884) TCGA-AR-A24P-01 9 92003919 92003919 G A SEMA4D Missense_Mutation p.S273F 0.30 deleterious(0) probably_damaging(1) TCGA-AR-A24P-01 9 990838 990838 G A DMRT3 Missense_Mutation p.V418I 0.46 tolerated_low_confidence(0.06) possibly_damaging(0.796) TCGA-AR-A24P-01 X 70836775 70836775 C T CXCR3 Missense_Mutation p.A230T 0.47 tolerated(0.41) benign(0.341) TCGA-AR-A24Q-01 10 111893152 111893152 G T ADD3 Missense_Mutation p.D633Y 0.14 deleterious(0) possibly_damaging(0.839) TCGA-AR-A24Q-01 10 131964903 131964903 A G GLRX3 Missense_Mutation p.Y204C 0.23 deleterious(0) probably_damaging(0.995) TCGA-AR-A24Q-01 10 16940992 16940992 A C CUBN Intron 0.23 TCGA-AR-A24Q-01 10 55826581 55826581 G A PCDH15 Missense_Mutation p.P719L 0.47 tolerated(0.31) benign(0.009) TCGA-AR-A24Q-01 10 64135939 64135939 G A ZNF365 Splice_Site 0.25 TCGA-AR-A24Q-01 10 6504320 6504320 C T PRKCQ Missense_Mutation p.A485T 0.24 deleterious(0.03) possibly_damaging(0.754) TCGA-AR-A24Q-01 10 72576580 72576580 G C SGPL1 5'UTR 0.11 TCGA-AR-A24Q-01 10 89692883 89692883 C G PTEN Missense_Mutation p.H123D 0.22 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Q-01 11 108380564 108380564 C A EXPH5 Silent p.G1890G 0.24 TCGA-AR-A24Q-01 11 1097877 1097877 G T MUC2 Missense_Mutation p.D2324Y 0.27 unknown(0) TCGA-AR-A24Q-01 11 11454295 11454295 C G GALNT18 Silent p.V156V 0.30 TCGA-AR-A24Q-01 11 1463799 1463799 C A BRSK2 Missense_Mutation p.L211M 0.33 deleterious(0.02) possibly_damaging(0.749) TCGA-AR-A24Q-01 11 32955888 32955888 G A QSER1 Silent p.V899V 0.46 TCGA-AR-A24Q-01 11 36596585 36596585 C T RAG1 Silent p.I577I 0.58 TCGA-AR-A24Q-01 11 4621418 4621418 C T TRIM68 3'UTR 0.38 TCGA-AR-A24Q-01 11 92577403 92577403 G T FAT3 Missense_Mutation p.D3624Y 0.23 probably_damaging(1) TCGA-AR-A24Q-01 11 94760221 94760221 G A KDM4E Silent p.L500L 0.28 TCGA-AR-A24Q-01 12 117968803 117968803 G - KSR2 Frame_Shift_Del p.P582Rfs*15 0.26 TCGA-AR-A24Q-01 12 1755437 1755437 G A WNT5B 3'UTR 0.41 TCGA-AR-A24Q-01 12 2024051 2024051 G T CACNA2D4 Missense_Mutation p.T93N 0.39 tolerated(0.11) benign(0.006) TCGA-AR-A24Q-01 12 45567563 45567563 A G PLEKHA8P1 RNA 0.08 TCGA-AR-A24Q-01 12 5020841 5020841 C A KCNA1 Silent p.G99G 0.08 TCGA-AR-A24Q-01 12 6153511 6153511 G A VWF Silent p.D796D 0.30 TCGA-AR-A24Q-01 12 76740626 76740626 C - BBS10 Frame_Shift_Del p.R380Nfs*5 0.18 TCGA-AR-A24Q-01 12 91449429 91449429 T A KERA Missense_Mutation p.R210S 0.14 tolerated(0.38) benign(0.002) TCGA-AR-A24Q-01 13 33739512 33739512 A G STARD13 Silent p.H95H 0.19 TCGA-AR-A24Q-01 13 36229093 36229093 A T NBEA Missense_Mutation p.I2692F 0.50 deleterious(0) possibly_damaging(0.737) TCGA-AR-A24Q-01 14 104208267 104208267 C A PPP1R13B Missense_Mutation p.G561V 0.29 tolerated(0.07) probably_damaging(0.918) TCGA-AR-A24Q-01 14 105517707 105517707 G A GPR132 Missense_Mutation p.A256V 0.24 deleterious(0) probably_damaging(0.973) TCGA-AR-A24Q-01 14 23778024 23778024 G A BCL2L2 Splice_Site p.X145_splice 0.62 TCGA-AR-A24Q-01 14 23829243 23829243 G A EFS Silent p.Y148Y 0.42 TCGA-AR-A24Q-01 14 58056019 58056019 T G SLC35F4 Missense_Mutation p.N204H 0.37 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Q-01 14 71476412 71476412 A G PCNX Silent p.E897E 0.10 TCGA-AR-A24Q-01 14 75497395 75497395 T G MLH3 Missense_Mutation p.K1280Q 0.08 deleterious(0.04) possibly_damaging(0.826) TCGA-AR-A24Q-01 15 27725885 27725885 G C GABRG3 Missense_Mutation p.D222H 0.37 deleterious(0) possibly_damaging(0.815) TCGA-AR-A24Q-01 15 43818417 43818417 G T MAP1A Missense_Mutation p.E1582D 0.27 benign(0.004) TCGA-AR-A24Q-01 15 44065273 44065273 G C ELL3 3'UTR 0.15 TCGA-AR-A24Q-01 15 45707816 45707816 C T SPATA5L1 Missense_Mutation p.A559V 0.13 deleterious(0.02) probably_damaging(0.911) TCGA-AR-A24Q-01 15 48736765 48736765 A G FBN1 Missense_Mutation p.Y2004H 0.35 probably_damaging(0.966) TCGA-AR-A24Q-01 15 55912177 55912177 G A PRTG 3'UTR 0.35 TCGA-AR-A24Q-01 15 85326113 85326113 T A ZNF592 Silent p.I69I 0.17 TCGA-AR-A24Q-01 15 90226590 90226590 T C PEX11A 3'UTR 0.09 TCGA-AR-A24Q-01 16 20826304 20826304 C T AC004381.6 Nonsense_Mutation p.Q103* 0.13 TCGA-AR-A24Q-01 16 21132063 21132063 G A DNAH3 Missense_Mutation p.A566V 0.09 deleterious(0.05) benign(0.001) TCGA-AR-A24Q-01 16 65319132 65319132 C T LINC00922 RNA 0.27 TCGA-AR-A24Q-01 16 76482725 76482725 T G CNTNAP4 Missense_Mutation p.D243E 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-AR-A24Q-01 16 76555164 76555164 A G CNTNAP4 Silent p.L758L 0.24 TCGA-AR-A24Q-01 16 84101990 84101990 T A MBTPS1 Silent p.V675V 0.14 TCGA-AR-A24Q-01 16 84115482 84115482 C T MBTPS1 Missense_Mutation p.A440T 0.17 deleterious(0) possibly_damaging(0.827) TCGA-AR-A24Q-01 16 84488552 84488552 C A ATP2C2 Silent p.A703A 0.16 TCGA-AR-A24Q-01 17 10424654 10424654 C T MYH2 Silent p.V1923V 0.17 TCGA-AR-A24Q-01 17 18681814 18681814 C G FBXW10 Missense_Mutation p.Q788E 0.12 tolerated(0.36) benign(0.004) TCGA-AR-A24Q-01 17 29226268 29226268 T C TEFM Silent p.L334L 0.19 TCGA-AR-A24Q-01 17 33884375 33884375 G C SLFN14 Missense_Mutation p.A236G 0.32 deleterious(0) possibly_damaging(0.901) TCGA-AR-A24Q-01 17 34071860 34071860 A C GAS2L2 3'UTR 0.17 TCGA-AR-A24Q-01 17 46882267 46882267 C T TTLL6 Missense_Mutation p.E64K 0.58 tolerated_low_confidence(0.05) benign(0.053) TCGA-AR-A24Q-01 17 64873353 64873353 T G CACNG5 5'UTR 0.11 TCGA-AR-A24Q-01 17 71165749 71165749 T A SSTR2 Silent p.P97P 0.32 TCGA-AR-A24Q-01 17 72916079 72916079 G A USH1G Silent p.S284S 0.70 TCGA-AR-A24Q-01 17 73625808 73625808 G A RECQL5 Missense_Mutation p.P643S 0.35 tolerated(0.25) benign(0.326) TCGA-AR-A24Q-01 17 7366443 7366443 C A ZBTB4 Nonsense_Mutation p.E620* 0.29 TCGA-AR-A24Q-01 17 73895302 73895302 C T MRPL38 Missense_Mutation p.G315S 0.09 deleterious(0.02) probably_damaging(1) TCGA-AR-A24Q-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.83 tolerated(0.11) benign(0.308) TCGA-AR-A24Q-01 17 77709394 77709394 G T ENPP7 Missense_Mutation p.A318S 0.16 tolerated(0.62) benign(0.006) TCGA-AR-A24Q-01 17 78389171 78389171 G C ENDOV Intron 0.91 TCGA-AR-A24Q-01 17 79870419 79870419 G C SIRT7 Missense_Mutation p.S359W 0.13 tolerated(0.18) benign(0.316) TCGA-AR-A24Q-01 17 8480572 8480572 T A MYH10 Missense_Mutation p.R205S 0.07 benign(0.281) TCGA-AR-A24Q-01 17 8480573 8480573 C T MYH10 Missense_Mutation p.R205K 0.07 benign(0.011) TCGA-AR-A24Q-01 18 19154245 19154339 TTAGAGTCAGACTTTACTTCCAGTACTTTTCTCTTCACATGTTTTTGACTTGTTTTATTAGATTTACTCTGAGTACTGCTACACTGCTCTTTTTT ACAG ESCO1 Frame_Shift_Del p.K156Lfs*2 0.38 TCGA-AR-A24Q-01 18 21901679 21901679 G C OSBPL1A Intron 0.28 TCGA-AR-A24Q-01 18 67613972 67613972 G C CD226 Nonsense_Mutation p.S127* 0.32 TCGA-AR-A24Q-01 19 13397499 13397499 G A CACNA1A Missense_Mutation p.T1124M 0.36 benign(0.001) TCGA-AR-A24Q-01 19 13476202 13476202 A C CACNA1A Missense_Mutation p.L238R 0.26 probably_damaging(0.955) TCGA-AR-A24Q-01 19 17370192 17370192 G A USHBP1 Silent p.L318L 0.37 TCGA-AR-A24Q-01 19 21712538 21712538 T A ZNF429 Missense_Mutation p.L28I 0.09 deleterious(0) probably_damaging(0.984) TCGA-AR-A24Q-01 19 43373177 43373177 G T PSG1 Missense_Mutation p.P240H 0.19 deleterious(0.02) probably_damaging(0.924) TCGA-AR-A24Q-01 19 44169580 44169580 G C PLAUR Missense_Mutation p.S66R 0.17 deleterious(0) benign(0.162) TCGA-AR-A24Q-01 19 44223365 44223365 T A IRGC Missense_Mutation p.S219T 0.38 tolerated(0.07) benign(0.317) TCGA-AR-A24Q-01 19 46195985 46195985 A C QPCTL Silent p.R8R 0.31 TCGA-AR-A24Q-01 19 47423613 47423614 AG C ARHGAP35 Frame_Shift_Del p.S561Pfs*13 0.24 TCGA-AR-A24Q-01 19 47423669 47423669 C T ARHGAP35 Silent p.I579I 0.29 TCGA-AR-A24Q-01 19 48058965 48058965 C G ZNF541 Missense_Mutation p.S50T 0.16 tolerated(0.1) possibly_damaging(0.571) TCGA-AR-A24Q-01 19 52869627 52869627 C A ZNF610 Silent p.T332T 0.26 TCGA-AR-A24Q-01 19 53057483 53057483 G T ZNF808 Missense_Mutation p.Q438H 0.12 tolerated(0.62) benign(0.017) TCGA-AR-A24Q-01 19 55377364 55377364 A T KIR3DL2 Missense_Mutation p.N369Y 0.52 tolerated(0.12) possibly_damaging(0.88) TCGA-AR-A24Q-01 19 5654079 5654079 A G SAFB Missense_Mutation p.N512D 0.68 tolerated(0.45) benign(0.366) TCGA-AR-A24Q-01 19 58049677 58049677 C T ZNF549 Silent p.H435H 0.10 TCGA-AR-A24Q-01 1 120506414 120506414 C A NOTCH2 Missense_Mutation p.L566F 0.16 tolerated(0.7) probably_damaging(0.999) TCGA-AR-A24Q-01 1 12855745 12855745 C G PRAMEF1 Missense_Mutation p.A342G 0.36 tolerated(0.11) benign(0.053) TCGA-AR-A24Q-01 1 152279942 152279942 G C FLG Missense_Mutation p.Q2474E 0.24 possibly_damaging(0.871) TCGA-AR-A24Q-01 1 1563469 1563497 TCCTCACGGAGGTGCCAAACATCGATGTT - MIB2 Frame_Shift_Del p.V699Dfs*67 0.72 TCGA-AR-A24Q-01 1 158612286 158612286 C T SPTA1 Missense_Mutation p.R1551Q 0.20 tolerated(0.07) benign(0.161) TCGA-AR-A24Q-01 1 15892576 15892576 G T DNAJC16 Splice_Site p.X560_splice 0.27 TCGA-AR-A24Q-01 1 160769623 160769623 A C LY9 Missense_Mutation p.I69L 0.29 tolerated(0.23) benign(0.395) TCGA-AR-A24Q-01 1 169798585 169798585 G A C1orf112 Missense_Mutation p.E437K 0.18 tolerated(0.61) possibly_damaging(0.476) TCGA-AR-A24Q-01 1 176769269 176769269 G C PAPPA2 Splice_Site p.X1734_splice 0.39 TCGA-AR-A24Q-01 1 192545958 192545958 C G RGS1 Silent p.A91A 0.20 TCGA-AR-A24Q-01 1 196684806 196684806 G T CFH Nonsense_Mutation p.E535* 0.40 TCGA-AR-A24Q-01 1 197313459 197313459 T C CRB1 Missense_Mutation p.L234S 0.06 deleterious(0.03) possibly_damaging(0.857) TCGA-AR-A24Q-01 1 210856854 210856854 C T KCNH1 Silent p.S913S 0.32 TCGA-AR-A24Q-01 1 211544643 211544643 G A TRAF5 Splice_Site p.X311_splice 0.05 TCGA-AR-A24Q-01 1 221912294 221912294 C - DUSP10 Frame_Shift_Del p.E265Nfs*5 0.14 TCGA-AR-A24Q-01 1 223178503 223178503 C G DISP1 Missense_Mutation p.P1255R 0.06 tolerated_low_confidence(0.12) benign(0.025) TCGA-AR-A24Q-01 1 23237037 23237037 A G EPHB2 Missense_Mutation p.S890G 0.50 deleterious(0.02) benign(0.011) TCGA-AR-A24Q-01 1 236212127 236212127 T C NID1 Missense_Mutation p.I130V 0.09 tolerated(1) benign(0) TCGA-AR-A24Q-01 1 241959652 241959652 G T WDR64 Missense_Mutation p.G1048C 0.28 deleterious(0.02) possibly_damaging(0.503) TCGA-AR-A24Q-01 1 246704220 246704220 T C TFB2M 3'UTR 0.21 TCGA-AR-A24Q-01 1 247024360 247024360 G C AHCTF1 Missense_Mutation p.P1334A 0.18 deleterious(0.01) possibly_damaging(0.779) TCGA-AR-A24Q-01 1 32946500 32946500 C A ZBTB8B Missense_Mutation p.L334M 0.52 deleterious(0.01) probably_damaging(0.991) TCGA-AR-A24Q-01 1 44595381 44595381 C G KLF17 Silent p.P146P 0.42 TCGA-AR-A24Q-01 1 48713212 48713212 G C SLC5A9 Silent p.A706A 0.09 TCGA-AR-A24Q-01 1 53723024 53723024 G C LRP8 Missense_Mutation p.S774R 0.27 tolerated(0.11) benign(0.323) TCGA-AR-A24Q-01 1 75693410 75693410 C T SLC44A5 Splice_Site p.X329_splice 0.60 TCGA-AR-A24Q-01 1 91180220 91180220 G T BARHL2 Missense_Mutation p.S240Y 0.56 deleterious(0) unknown(0) TCGA-AR-A24Q-01 20 31765968 31765968 C T BPIFA2 Silent p.I193I 0.34 TCGA-AR-A24Q-01 20 39751880 39751880 C A TOP1 Silent p.T747T 0.39 TCGA-AR-A24Q-01 20 40043952 40043952 C T CHD6 Silent p.Q2271Q 0.10 TCGA-AR-A24Q-01 20 43150615 43150615 G A SERINC3 5'UTR 0.28 TCGA-AR-A24Q-01 20 43739046 43739046 G T WFDC5 Missense_Mutation p.A121D 0.26 tolerated(0.27) benign(0.337) TCGA-AR-A24Q-01 20 5163085 5163085 C G CDS2 Missense_Mutation p.F194L 0.22 deleterious(0.01) possibly_damaging(0.651) TCGA-AR-A24Q-01 20 62195294 62195294 C T HELZ2 Missense_Mutation p.M1627I 0.19 tolerated(1) benign(0.015) TCGA-AR-A24Q-01 21 36164864 36164864 G A RUNX1 Silent p.P337P 0.67 TCGA-AR-A24Q-01 22 39760187 39760187 C T SYNGR1 Intron 0.19 TCGA-AR-A24Q-01 22 46653339 46653339 C A PKDREJ Missense_Mutation p.A1961S 0.37 tolerated(0.47) benign(0.004) TCGA-AR-A24Q-01 2 102984303 102984303 C G IL18R1 Missense_Mutation p.P26R 0.09 tolerated(0.62) benign(0.013) TCGA-AR-A24Q-01 2 103335116 103335116 C A MFSD9 Silent p.T396T 0.36 TCGA-AR-A24Q-01 2 10924517 10924517 C A ATP6V1C2 3'Flank 0.38 TCGA-AR-A24Q-01 2 120640129 120640129 G A PTPN4 Missense_Mutation p.D173N 0.47 tolerated(0.46) possibly_damaging(0.514) TCGA-AR-A24Q-01 2 153032129 153032129 C T STAM2 Missense_Mutation p.E10K 0.11 deleterious(0.02) benign(0.266) TCGA-AR-A24Q-01 2 159195197 159195197 A T CCDC148 Intron 0.08 TCGA-AR-A24Q-01 2 159526302 159526302 G C PKP4 Missense_Mutation p.E933D 0.32 tolerated(1) benign(0.02) TCGA-AR-A24Q-01 2 166201118 166201118 G C SCN2A Missense_Mutation p.K872N 0.16 deleterious(0) probably_damaging(0.974) TCGA-AR-A24Q-01 2 167285716 167285716 C T SCN7A Missense_Mutation p.M887I 0.23 tolerated(0.21) benign(0.015) TCGA-AR-A24Q-01 2 182765537 182765537 T A SSFA2 Missense_Mutation p.N206K 0.05 deleterious(0) possibly_damaging(0.69) TCGA-AR-A24Q-01 2 182765538 182765538 T C SSFA2 Missense_Mutation p.S207P 0.05 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Q-01 2 190647150 190647150 G C ORMDL1 Missense_Mutation p.L58V 0.09 tolerated(0.44) benign(0.006) TCGA-AR-A24Q-01 2 202149565 202149565 C T CASP8 Missense_Mutation p.L336F 0.45 deleterious(0) probably_damaging(1) TCGA-AR-A24Q-01 2 219496970 219496970 G A PLCD4 Missense_Mutation p.E462K 0.12 tolerated(0.13) benign(0.01) TCGA-AR-A24Q-01 2 222290705 222290705 A C EPHA4 3'UTR 0.06 TCGA-AR-A24Q-01 2 237489606 237489606 C T ACKR3 Silent p.I166I 0.22 TCGA-AR-A24Q-01 2 70408913 70408913 C G C2orf42 Missense_Mutation p.G69R 0.33 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Q-01 2 70442526 70442526 C G TIA1 Missense_Mutation p.D289H 0.18 deleterious(0) probably_damaging(0.984) TCGA-AR-A24Q-01 2 74750598 74750598 G T DQX1 Missense_Mutation p.P295T 0.57 deleterious(0.04) benign(0.205) TCGA-AR-A24Q-01 2 97025913 97025913 A G NCAPH Missense_Mutation p.K464E 0.14 deleterious(0.01) possibly_damaging(0.864) TCGA-AR-A24Q-01 2 97368946 97368946 T G LMAN2L 3'Flank 0.25 TCGA-AR-A24Q-01 3 130110337 130110337 G A COL6A5 Missense_Mutation p.R911H 0.21 deleterious(0) probably_damaging(0.993) TCGA-AR-A24Q-01 3 130368099 130368099 C G COL6A6 Missense_Mutation p.A1809G 0.08 deleterious(0) benign(0.185) TCGA-AR-A24Q-01 3 130686035 130686035 G C ATP2C1 Missense_Mutation p.G424A 0.29 tolerated(0.3) benign(0.288) TCGA-AR-A24Q-01 3 13669464 13669464 G C FBLN2 Missense_Mutation p.C855S 0.09 deleterious(0) benign(0.121) TCGA-AR-A24Q-01 3 150840683 150840683 T A MED12L Silent p.T106T 0.17 TCGA-AR-A24Q-01 3 15677076 15677076 G A BTD Missense_Mutation p.E64K 0.17 deleterious(0.02) possibly_damaging(0.755) TCGA-AR-A24Q-01 3 167000239 167000239 T C ZBBX Missense_Mutation p.N681D 0.14 deleterious(0.02) benign(0.39) TCGA-AR-A24Q-01 3 167217981 167217981 T C WDR49 Silent p.E645E 0.06 TCGA-AR-A24Q-01 3 178917593 178917593 C A PIK3CA Silent p.L156L 0.08 TCGA-AR-A24Q-01 3 179341750 179341750 A G NDUFB5 Silent p.G164G 0.18 TCGA-AR-A24Q-01 3 183857942 183857942 G A EIF2B5 Silent p.E280E 0.27 TCGA-AR-A24Q-01 3 186760459 186760459 G C ST6GAL1 5'UTR 0.33 TCGA-AR-A24Q-01 3 197553800 197553800 C T LRCH3 Missense_Mutation p.T231I 0.08 deleterious(0.03) benign(0.027) TCGA-AR-A24Q-01 3 30733149 30733149 G C TGFBR2 3'UTR 0.15 TCGA-AR-A24Q-01 3 38048147 38048147 G C VILL Missense_Mutation p.A805P 0.19 tolerated(0.2) benign(0.029) TCGA-AR-A24Q-01 3 89390198 89390198 A T EPHA3 Missense_Mutation p.D316V 0.19 deleterious(0) probably_damaging(0.997) TCGA-AR-A24Q-01 4 135122010 135122010 G C PABPC4L Nonsense_Mutation p.Y113* 0.11 TCGA-AR-A24Q-01 4 160252682 160252682 G T RAPGEF2 Nonsense_Mutation p.E362* 0.18 TCGA-AR-A24Q-01 4 2307162 2307162 C A ZFYVE28 Missense_Mutation p.G302V 0.38 tolerated(0.76) benign(0) TCGA-AR-A24Q-01 4 57182104 57182104 C A KIAA1211 Silent p.A812A 0.67 TCGA-AR-A24Q-01 4 5961272 5961274 GTT - C4orf50 In_Frame_Del p.Q694del 0.71 TCGA-AR-A24Q-01 4 75311103 75311103 C G AREG Missense_Mutation p.S14W 0.50 tolerated_low_confidence(0.11) unknown(0) TCGA-AR-A24Q-01 4 79293933 79293933 G C FRAS1 Missense_Mutation p.M977I 0.08 benign(0.005) TCGA-AR-A24Q-01 4 87022223 87022223 T A MAPK10 Missense_Mutation p.M238L 0.49 tolerated(0.1) benign(0.063) TCGA-AR-A24Q-01 5 140559157 140559157 G A PCDHB8 Silent p.L514L 0.04 TCGA-AR-A24Q-01 5 145894915 145894922 GCTCAGCA - GPR151 Frame_Shift_Del p.L252Hfs*94 0.66 TCGA-AR-A24Q-01 5 43505873 43505873 G A C5orf34 Silent p.S303S 0.47 TCGA-AR-A24Q-01 5 52779551 52779551 A C FST Missense_Mutation p.K165N 0.22 deleterious(0) possibly_damaging(0.724) TCGA-AR-A24Q-01 5 95234001 95234001 G T ELL2 Missense_Mutation p.L490I 0.26 tolerated(0.34) benign(0.001) TCGA-AR-A24Q-01 6 117073659 117073659 A G FAM162B 3'UTR 0.09 TCGA-AR-A24Q-01 6 117130674 117130674 C G GPRC6A Missense_Mutation p.D101H 0.17 deleterious(0) probably_damaging(0.997) TCGA-AR-A24Q-01 6 152527416 152527416 C G SYNE1 Missense_Mutation p.D7636H 0.38 probably_damaging(0.998) TCGA-AR-A24Q-01 6 33967747 33967747 G C MIR1275 3'Flank 0.07 TCGA-AR-A24Q-01 6 45514594 45514594 C G RUNX2 Missense_Mutation p.P373R 0.41 tolerated(0.09) probably_damaging(0.986) TCGA-AR-A24Q-01 6 46657757 46657757 T G TDRD6 Missense_Mutation p.I631S 0.41 deleterious(0) possibly_damaging(0.873) TCGA-AR-A24Q-01 6 84798939 84798939 C T MRAP2 Silent p.Y119Y 0.12 TCGA-AR-A24Q-01 6 90566882 90566882 A C CASP8AP2 RNA 0.36 TCGA-AR-A24Q-01 7 100484569 100484569 C T SRRT Missense_Mutation p.R601W 0.16 deleterious(0) possibly_damaging(0.545) TCGA-AR-A24Q-01 7 103197424 103197424 C A RELN Missense_Mutation p.G1933C 0.27 deleterious(0) probably_damaging(0.998) TCGA-AR-A24Q-01 7 111982752 111982752 C G ZNF277 Missense_Mutation p.Q441E 0.08 tolerated(0.08) benign(0.005) TCGA-AR-A24Q-01 7 123594195 123594195 G A SPAM1 Missense_Mutation p.E191K 0.47 deleterious(0.03) benign(0.378) TCGA-AR-A24Q-01 7 141255316 141255316 C G AGK Missense_Mutation p.A17G 0.09 tolerated(0.06) benign(0.017) TCGA-AR-A24Q-01 7 150739114 150739114 G A ABCB8 Missense_Mutation p.E562K 0.19 tolerated(0.15) benign(0.06) TCGA-AR-A24Q-01 7 154754122 154754122 G C PAXIP1 Missense_Mutation p.T679R 0.36 deleterious(0.04) unknown(0) TCGA-AR-A24Q-01 7 24843951 24843951 G C OSBPL3 Missense_Mutation p.H850Q 0.16 deleterious(0.02) benign(0.126) TCGA-AR-A24Q-01 7 44157582 44157582 A G POLD2 Missense_Mutation p.M101T 0.09 deleterious(0.01) probably_damaging(0.951) TCGA-AR-A24Q-01 7 75192287 75192287 C T HIP1 Silent p.E324E 0.32 TCGA-AR-A24Q-01 7 97483954 97483954 C A ASNS Missense_Mutation p.R392S 0.07 deleterious(0) probably_damaging(0.973) TCGA-AR-A24Q-01 8 105436491 105436491 C A DPYS Missense_Mutation p.D407Y 0.05 deleterious(0) probably_damaging(0.997) TCGA-AR-A24Q-01 8 113326154 113326154 G T CSMD3 Silent p.G2559G 0.27 TCGA-AR-A24Q-01 8 113960108 113960108 T A CSMD3 Splice_Site p.X474_splice 0.03 TCGA-AR-A24Q-01 8 1581131 1581131 C A DLGAP2 Missense_Mutation p.Q497K 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-AR-A24Q-01 8 21767238 21767238 G A DOK2 Missense_Mutation p.H275Y 0.21 tolerated(0.7) possibly_damaging(0.886) TCGA-AR-A24Q-01 8 2813173 2813173 C T CSMD1 Missense_Mutation p.G3311E 0.42 probably_damaging(1) TCGA-AR-A24Q-01 8 35606156 35606156 C G UNC5D Silent p.V626V 0.43 TCGA-AR-A24Q-01 8 38899492 38899492 T A ADAM9 Missense_Mutation p.S386R 0.11 deleterious(0) probably_damaging(0.988) TCGA-AR-A24Q-01 8 41397271 41397271 G T GINS4 Silent p.P124P 0.29 TCGA-AR-A24Q-01 8 56435848 56435848 G A XKR4 Missense_Mutation p.A339T 0.14 tolerated(0.23) probably_damaging(0.996) TCGA-AR-A24Q-01 8 56435849 56435849 C G XKR4 Missense_Mutation p.A339G 0.14 deleterious(0) probably_damaging(0.997) TCGA-AR-A24Q-01 8 61654923 61654923 C T CHD7 Missense_Mutation p.S311F 0.14 possibly_damaging(0.485) TCGA-AR-A24Q-01 8 68334591 68334591 C A CPA6 3'UTR 0.33 TCGA-AR-A24Q-01 9 107379682 107379682 A C OR13C9 Silent p.L268L 0.28 TCGA-AR-A24Q-01 9 107558476 107558476 C A ABCA1 Missense_Mutation p.W1747L 0.38 deleterious(0) possibly_damaging(0.585) TCGA-AR-A24Q-01 9 129455805 129455805 C A LMX1B Silent p.V248V 0.16 TCGA-AR-A24Q-01 9 132686246 132686246 T C FNBP1 Silent p.S349S 0.17 TCGA-AR-A24Q-01 9 135786397 135786397 C G TSC1 Missense_Mutation p.G378A 0.07 tolerated(0.09) benign(0.394) TCGA-AR-A24Q-01 9 136028953 136028953 C A GBGT1 3'UTR 0.48 TCGA-AR-A24Q-01 9 136215091 136215091 C G RPL7A 5'UTR 0.08 TCGA-AR-A24Q-01 9 138395757 138395757 G T MRPS2 Silent p.V223V 0.18 TCGA-AR-A24Q-01 9 139648916 139648916 G A LCN8 3'UTR 0.17 TCGA-AR-A24Q-01 9 33466362 33466362 G A NOL6 Missense_Mutation p.S718F 0.24 tolerated(0.05) benign(0.094) TCGA-AR-A24Q-01 9 33467129 33467129 G A NOL6 Silent p.V619V 0.12 TCGA-AR-A24Q-01 9 33467240 33467240 G A NOL6 Silent p.F582F 0.19 TCGA-AR-A24Q-01 9 33467496 33467496 G T NOL6 Missense_Mutation p.P541T 0.12 deleterious(0.04) probably_damaging(0.919) TCGA-AR-A24Q-01 9 33468403 33468403 G A NOL6 Silent p.F408F 0.18 TCGA-AR-A24Q-01 9 33468514 33468514 G A NOL6 Missense_Mutation p.P400S 0.22 tolerated(0.88) benign(0.004) TCGA-AR-A24Q-01 9 33468536 33468536 G A NOL6 Silent p.I392I 0.21 TCGA-AR-A24Q-01 9 33468815 33468815 G A NOL6 Missense_Mutation p.S361F 0.20 deleterious(0.01) probably_damaging(0.924) TCGA-AR-A24Q-01 9 33469038 33469038 G A NOL6 Missense_Mutation p.S315L 0.35 deleterious(0.03) benign(0.41) TCGA-AR-A24Q-01 9 33469105 33469105 G C NOL6 Missense_Mutation p.P293A 0.30 tolerated(0.08) possibly_damaging(0.776) TCGA-AR-A24Q-01 9 33469547 33469547 G C NOL6 Missense_Mutation p.S226C 0.16 deleterious(0.01) possibly_damaging(0.841) TCGA-AR-A24Q-01 9 33470040 33470040 G C NOL6 Missense_Mutation p.I176M 0.11 tolerated(0.11) benign(0.05) TCGA-AR-A24Q-01 9 71628311 71628311 G T PRKACG Missense_Mutation p.A233D 0.29 deleterious(0.03) possibly_damaging(0.525) TCGA-AR-A24Q-01 9 79324308 79324308 G T PRUNE2 Missense_Mutation p.S961Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Q-01 9 79324671 79324671 C A PRUNE2 Missense_Mutation p.G840V 0.07 deleterious(0) probably_damaging(0.974) TCGA-AR-A24Q-01 9 79325223 79325223 C A PRUNE2 Missense_Mutation p.W656L 0.43 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Q-01 9 79834980 79834980 G C VPS13A Missense_Mutation p.E289Q 0.22 deleterious(0.03) benign(0.164) TCGA-AR-A24Q-01 X 106097454 106097454 T G TBC1D8B Missense_Mutation p.D760E 0.40 tolerated(1) benign(0) TCGA-AR-A24Q-01 X 148627223 148627223 T A CXorf40A Missense_Mutation p.V16D 0.35 deleterious(0) possibly_damaging(0.783) TCGA-AR-A24Q-01 X 154156938 154156938 G C F8 Missense_Mutation p.S1709R 0.06 deleterious(0) possibly_damaging(0.476) TCGA-AR-A24Q-01 X 18961827 18961827 C T PHKA2 Splice_Site p.X239_splice 0.38 TCGA-AR-A24Q-01 X 44969495 44969495 G C KDM6A Splice_Site p.X1392_splice 0.36 TCGA-AR-A24Q-01 X 54020123 54020123 C T PHF8 Missense_Mutation p.A549T 0.22 tolerated(0.41) benign(0.009) TCGA-AR-A24Q-01 X 65253420 65253420 A T VSIG4 Missense_Mutation p.L103Q 0.20 deleterious(0) probably_damaging(1) TCGA-AR-A24Q-01 X 70356243 70356243 G A MED12 Missense_Mutation p.R1713Q 0.29 benign(0.012) TCGA-AR-A24R-01 10 101978864 101978864 G A CHUK Missense_Mutation p.P197L 0.51 tolerated(0.08) possibly_damaging(0.872) TCGA-AR-A24R-01 12 100443954 100443954 C T UHRF1BP1L Missense_Mutation p.R1237H 0.35 tolerated(0.06) possibly_damaging(0.849) TCGA-AR-A24R-01 12 105589107 105589107 A C APPL2 Missense_Mutation p.N397K 0.24 deleterious(0.05) probably_damaging(0.944) TCGA-AR-A24R-01 13 64320957 64320957 C G AL445989.1 Missense_Mutation p.N8K 0.47 unknown(0) TCGA-AR-A24R-01 14 20612744 20612744 C T OR4N5 Missense_Mutation p.P284S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A24R-01 14 76187037 76187037 A G TTLL5 Missense_Mutation p.S345G 0.37 deleterious(0) benign(0.304) TCGA-AR-A24R-01 14 77600207 77600207 C T ZDHHC22 Missense_Mutation p.C204Y 0.41 deleterious(0.01) possibly_damaging(0.462) TCGA-AR-A24R-01 16 58575434 58575450 GCTGACTTAAGTCATTT - CNOT1 Frame_Shift_Del p.N1586Hfs*16 0.44 TCGA-AR-A24R-01 17 34894403 34894403 T C PIGW Missense_Mutation p.F485L 0.29 tolerated(0.19) benign(0.011) TCGA-AR-A24R-01 17 72310298 72310298 G A DNAI2 Silent p.E587E 0.16 TCGA-AR-A24R-01 17 78328131 78328131 A C RNF213 Intron 0.21 TCGA-AR-A24R-01 19 1825883 1825883 G A REXO1 Silent p.P657P 0.34 TCGA-AR-A24R-01 19 2807034 2807034 C T THOP1 Silent p.T290T 0.29 TCGA-AR-A24R-01 19 2834042 2834042 G A ZNF554 Missense_Mutation p.R270Q 0.12 tolerated(0.77) benign(0.001) TCGA-AR-A24R-01 19 39959953 39959953 A C SUPT5H Missense_Mutation p.E430A 0.47 tolerated(0.12) benign(0.222) TCGA-AR-A24R-01 1 145456649 145456649 C A POLR3GL Missense_Mutation p.E215D 0.08 deleterious(0) probably_damaging(0.995) TCGA-AR-A24R-01 1 154557805 154557805 T G ADAR Missense_Mutation p.I1111L 0.31 deleterious(0) benign(0.057) TCGA-AR-A24R-01 1 38341357 38341357 T A INPP5B Missense_Mutation p.K570M 0.54 deleterious(0) possibly_damaging(0.883) TCGA-AR-A24R-01 20 39316516 39316516 G A MAFB 3'UTR 0.15 TCGA-AR-A24R-01 21 36171623 36171624 AG - RUNX1 Frame_Shift_Del p.S314Cfs*285 0.57 TCGA-AR-A24R-01 2 242815070 242815070 G A CXXC11 Missense_Mutation p.A455T 0.38 tolerated(0.7) benign(0.004) TCGA-AR-A24R-01 2 98928335 98928335 C T VWA3B Missense_Mutation p.A1192V 0.30 tolerated_low_confidence(0.62) benign(0.004) TCGA-AR-A24R-01 4 106552056 106552058 AGA - ARHGEF38 In_Frame_Del p.E171del 0.33 TCGA-AR-A24R-01 4 1818540 1818540 C T LETM1 Missense_Mutation p.M615I 0.26 deleterious(0.03) benign(0.443) TCGA-AR-A24R-01 4 85731339 85731339 A - WDFY3 Frame_Shift_Del p.F682Lfs*11 0.32 TCGA-AR-A24R-01 7 14737756 14737756 T C DGKB Silent p.A185A 0.41 TCGA-AR-A24R-01 8 75263607 75263607 C T GDAP1 Silent p.N72N 0.23 TCGA-AR-A24R-01 9 125551282 125551282 G A OR5C1 Missense_Mutation p.R24H 0.51 tolerated(0.23) benign(0.026) TCGA-AR-A24R-01 9 35684742 35684742 G T TPM2 Intron 0.15 TCGA-AR-A24R-01 9 86354466 86354467 AA - GKAP1 3'UTR 0.48 TCGA-AR-A24R-01 X 70325861 70325861 C T CXorf65 Missense_Mutation p.R80H 0.33 tolerated(0.27) benign(0.116) TCGA-AR-A24S-01 11 119103255 119103255 T C CBL Missense_Mutation p.I98T 0.16 deleterious(0.02) possibly_damaging(0.608) TCGA-AR-A24S-01 11 88911811 88911811 C A TYR Missense_Mutation p.N230K 0.13 deleterious(0.03) benign(0.304) TCGA-AR-A24S-01 11 88911832 88911832 C A TYR Missense_Mutation p.D237E 0.14 deleterious(0) probably_damaging(0.999) TCGA-AR-A24S-01 12 52708571 52708571 G A KRT83 Silent p.C442C 0.27 TCGA-AR-A24S-01 12 85638796 85638796 G A LRRIQ1 3'UTR 0.30 TCGA-AR-A24S-01 12 8926133 8926140 CCCTTCTA - RIMKLB Frame_Shift_Del p.L307Wfs*18 0.40 TCGA-AR-A24S-01 14 105416976 105416976 G A AHNAK2 Silent p.D1604D 0.21 TCGA-AR-A24S-01 14 23465222 23465222 A G C14orf93 Missense_Mutation p.S285P 0.10 tolerated_low_confidence(0.08) probably_damaging(0.959) TCGA-AR-A24S-01 14 56763462 56763462 C T PELI2 Missense_Mutation p.R281W 0.15 deleterious(0) probably_damaging(1) TCGA-AR-A24S-01 14 86088323 86088323 C T FLRT2 Silent p.F155F 0.15 TCGA-AR-A24S-01 15 84705743 84705743 C T ADAMTSL3 Intron 0.13 TCGA-AR-A24S-01 16 27375135 27375135 A G IL4R Missense_Mutation p.Y821C 0.36 tolerated(0.37) benign(0) TCGA-AR-A24S-01 17 30648095 30648095 C T RHBDL3 Silent p.G354G 0.16 TCGA-AR-A24S-01 17 34199347 34199347 A G CCL5 3'UTR 0.09 TCGA-AR-A24S-01 17 7577096 7577096 T A TP53 Missense_Mutation p.D281V 0.52 deleterious(0) probably_damaging(0.99) TCGA-AR-A24S-01 18 20936610 20936610 G A TMEM241 Silent p.L207L 0.53 TCGA-AR-A24S-01 19 10794678 10794678 G A ILF3 Intron 0.12 TCGA-AR-A24S-01 19 31768862 31768862 G A TSHZ3 Silent p.L613L 0.14 TCGA-AR-A24S-01 19 52529152 52529152 T A ZNF614 5'UTR 0.32 TCGA-AR-A24S-01 19 52888293 52888293 C G ZNF880 Missense_Mutation p.T487S 0.21 tolerated(0.09) benign(0.166) TCGA-AR-A24S-01 19 53005128 53005128 G A ZNF578 Silent p.R10R 0.20 TCGA-AR-A24S-01 19 58385256 58385256 A G ZNF814 Missense_Mutation p.F501S 0.19 deleterious(0) probably_damaging(0.994) TCGA-AR-A24S-01 19 9073430 9073430 C G MUC16 Missense_Mutation p.M4672I 0.41 unknown(0) TCGA-AR-A24S-01 19 9408556 9408556 C A ZNF699 Missense_Mutation p.G96C 0.11 tolerated(0.11) possibly_damaging(0.498) TCGA-AR-A24S-01 1 156554995 156554995 G A TTC24 Silent p.P476P 0.16 TCGA-AR-A24S-01 1 182025773 182025773 G A ZNF648 Missense_Mutation p.A458V 0.21 tolerated(0.07) possibly_damaging(0.791) TCGA-AR-A24S-01 1 186413472 186413472 A G PDC Missense_Mutation p.I127T 0.36 deleterious(0) benign(0.155) TCGA-AR-A24S-01 1 237666734 237666734 C T RYR2 Missense_Mutation p.R848C 0.09 possibly_damaging(0.714) TCGA-AR-A24S-01 1 45275937 45275937 T A BTBD19 Missense_Mutation p.C47S 0.19 deleterious(0.04) probably_damaging(0.934) TCGA-AR-A24S-01 1 55166925 55166925 G A MROH7 Missense_Mutation p.R1072Q 0.14 tolerated(1) benign(0.001) TCGA-AR-A24S-01 21 45651313 45651313 C A ICOSLG Nonsense_Mutation p.E238* 0.37 TCGA-AR-A24S-01 2 121043616 121043616 C T RALB Missense_Mutation p.S94L 0.17 deleterious(0) probably_damaging(0.999) TCGA-AR-A24S-01 2 55894154 55894154 G A PNPT1 Missense_Mutation p.S383L 0.12 deleterious(0) probably_damaging(0.997) TCGA-AR-A24S-01 3 142840425 142840425 A G CHST2 Missense_Mutation p.K256R 0.33 tolerated(0.69) probably_damaging(0.992) TCGA-AR-A24S-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.47 deleterious(0.04) probably_damaging(0.96) TCGA-AR-A24S-01 3 186961340 186961340 G C MASP1 Missense_Mutation p.T387S 0.13 tolerated(0.05) benign(0.378) TCGA-AR-A24S-01 3 447268 447268 C T CHL1 Silent p.Y1183Y 0.24 TCGA-AR-A24S-01 4 123202768 123202768 T A KIAA1109 Missense_Mutation p.V2959D 0.24 benign(0.145) TCGA-AR-A24S-01 4 123271039 123271039 G C KIAA1109 Missense_Mutation p.K4553N 0.12 benign(0.063) TCGA-AR-A24S-01 4 144467081 144467081 C T SMARCA5 Missense_Mutation p.P801S 0.18 tolerated(0.07) benign(0.359) TCGA-AR-A24S-01 5 140581057 140581057 G A PCDHB11 Silent p.A570A 0.27 TCGA-AR-A24S-01 5 272863 272863 G A PDCD6 Missense_Mutation p.E47K 0.23 deleterious(0) probably_damaging(1) TCGA-AR-A24S-01 5 76707504 76707504 G A PDE8B Missense_Mutation p.G512S 0.21 tolerated(0.06) probably_damaging(0.969) TCGA-AR-A24S-01 6 26217395 26217395 G C HIST1H2AE Missense_Mutation p.E65Q 0.30 deleterious_low_confidence(0.04) benign(0.042) TCGA-AR-A24S-01 6 31238894 31238894 A C HLA-C Missense_Mutation p.L192R 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AR-A24S-01 6 33255278 33255278 G C WDR46 Missense_Mutation p.L245V 0.19 deleterious(0.02) possibly_damaging(0.541) TCGA-AR-A24S-01 7 103206817 103206817 C T RELN Missense_Mutation p.G1597E 0.16 deleterious(0) probably_damaging(1) TCGA-AR-A24S-01 7 10978513 10978514 - G NDUFA4 Frame_Shift_Ins p.L18Pfs*32 0.20 TCGA-AR-A24S-01 7 151945451 151945451 C A KMT2C Nonsense_Mutation p.E690* 0.27 TCGA-AR-A24S-01 7 37988614 37988614 G A EPDR1 Missense_Mutation p.V148I 0.16 deleterious(0.04) benign(0.206) TCGA-AR-A24S-01 7 91643582 91643582 A G AKAP9 Silent p.L1184L 0.16 TCGA-AR-A24S-01 8 20074770 20074770 T C ATP6V1B2 Silent p.L401L 0.24 TCGA-AR-A24S-01 9 137707822 137707822 A G COL5A1 Silent p.E1370E 0.14 TCGA-AR-A24S-01 9 8500858 8500858 T C PTPRD Missense_Mutation p.E675G 0.04 tolerated(0.2) benign(0.018) TCGA-AR-A24S-01 X 1475125 1475125 C G IL3RA Missense_Mutation p.P210A 0.22 tolerated(0.44) possibly_damaging(0.706) TCGA-AR-A24S-01 X 47061807 47061807 C T UBA1 Silent p.F320F 0.13 TCGA-AR-A24S-01 X 63490847 63490847 C T MTMR8 Missense_Mutation p.D530N 0.17 tolerated(0.4) benign(0.002) TCGA-AR-A24S-01 X 69639610 69639610 G A KIF4A Missense_Mutation p.V1158I 0.14 tolerated_low_confidence(0.37) benign(0.007) TCGA-AR-A24S-01 X 74519659 74519659 G A UPRT Missense_Mutation p.A218T 0.28 deleterious(0.05) probably_damaging(0.994) TCGA-AR-A24T-01 11 55703435 55703435 C A OR5I1 Missense_Mutation p.V148F 0.35 tolerated(0.13) possibly_damaging(0.521) TCGA-AR-A24T-01 11 57003305 57003305 G A APLNR 3'UTR 0.21 TCGA-AR-A24T-01 12 111951204 111951204 C T ATXN2 Silent p.R665R 0.26 TCGA-AR-A24T-01 12 6804358 6804358 C T PIANP Intron 0.16 TCGA-AR-A24T-01 14 103372005 103372005 G A TRAF3 Missense_Mutation p.A531T 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A24T-01 14 24898144 24898144 G T CBLN3 Silent p.V39V 0.33 TCGA-AR-A24T-01 14 94046588 94046589 - G UNC79 Frame_Shift_Ins p.S669Ifs*19 0.28 TCGA-AR-A24T-01 15 101120487 101120488 - A LINS Frame_Shift_Ins p.Y157Lfs*12 0.22 TCGA-AR-A24T-01 17 43923374 43923374 C A SPPL2C Silent p.R368R 0.16 TCGA-AR-A24T-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.30 tolerated(0.13) possibly_damaging(0.631) TCGA-AR-A24T-01 18 10800452 10800452 C T PIEZO2 Missense_Mutation p.G421S 0.19 deleterious(0.04) benign(0.25) TCGA-AR-A24T-01 18 19995559 19995559 A G CTAGE1 Missense_Mutation p.F739S 0.31 deleterious(0.03) benign(0) TCGA-AR-A24T-01 19 15536454 15536454 C T WIZ Missense_Mutation p.V403I 0.29 tolerated(0.11) possibly_damaging(0.846) TCGA-AR-A24T-01 1 115829179 115829179 G A NGF Missense_Mutation p.R80W 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A24T-01 1 16265897 16265909 TCATGATTGTCAT - SPEN Frame_Shift_Del p.M3658Pfs*60 0.32 TCGA-AR-A24T-01 1 184764696 184764696 C T FAM129A Silent p.T734T 0.30 TCGA-AR-A24T-01 1 54562090 54562090 C T TCEANC2 Nonsense_Mutation p.Q191* 0.35 TCGA-AR-A24T-01 22 20073784 20073784 C T DGCR8 Missense_Mutation p.R100W 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AR-A24T-01 22 32889166 32889166 G T FBXO7 Missense_Mutation p.D348Y 0.28 deleterious(0) probably_damaging(1) TCGA-AR-A24T-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A24T-01 4 113568475 113568475 C T LARP7 Missense_Mutation p.P263L 0.18 tolerated(0.29) benign(0.002) TCGA-AR-A24T-01 5 13770961 13770961 G A DNAH5 Nonsense_Mutation p.R3168* 0.29 TCGA-AR-A24T-01 6 136932432 136932432 C A MAP3K5 Nonsense_Mutation p.E837* 0.07 TCGA-AR-A24T-01 7 107408040 107408040 C T SLC26A3 Missense_Mutation p.R752H 0.33 deleterious_low_confidence(0.01) benign(0.04) TCGA-AR-A24T-01 7 131128391 131128394 GAGA - MKLN1 Frame_Shift_Del p.E443Tfs*14 0.30 TCGA-AR-A24T-01 7 44080568 44080568 G C DBNL 5'Flank 0.18 TCGA-AR-A24T-01 9 134759459 134759459 G C MED27 Missense_Mutation p.Q237E 0.29 tolerated(0.52) benign(0.038) TCGA-AR-A24T-01 X 70352768 70352768 G T MED12 Nonsense_Mutation p.E1497* 0.26 TCGA-AR-A24U-01 10 1206503 1206503 C T LINC00200 RNA 0.34 TCGA-AR-A24U-01 11 17118633 17118633 G A PIK3C2A Missense_Mutation p.H1433Y 0.08 deleterious(0) possibly_damaging(0.897) TCGA-AR-A24U-01 11 48266798 48266798 G A OR4X2 Missense_Mutation p.G48D 0.07 tolerated(0.2) benign(0.027) TCGA-AR-A24U-01 12 80765807 80765807 G A OTOGL Silent p.G2239G 0.14 TCGA-AR-A24U-01 13 37574823 37574823 C T EXOSC8 5'UTR 0.19 TCGA-AR-A24U-01 17 27235836 27235836 A T PHF12 Missense_Mutation p.V808E 0.10 deleterious(0) probably_damaging(0.973) TCGA-AR-A24U-01 17 37565106 37565106 G C MED1 Nonsense_Mutation p.S1123* 0.08 TCGA-AR-A24U-01 17 46804173 46804173 C A HOXB13 Silent p.V278V 0.04 TCGA-AR-A24U-01 17 46804194 46804194 C T HOXB13 Silent p.E271E 0.05 TCGA-AR-A24U-01 17 63221623 63221623 C T RGS9 Intron 0.09 TCGA-AR-A24U-01 17 66526498 66526498 C T PRKAR1A Nonsense_Mutation p.R352* 0.14 TCGA-AR-A24U-01 17 7579536 7579536 C A TP53 Nonsense_Mutation p.E51* 0.11 TCGA-AR-A24U-01 18 60036105 60036105 G A TNFRSF11A Missense_Mutation p.A319T 0.26 tolerated(0.46) benign(0.046) TCGA-AR-A24U-01 19 11618826 11618826 G C ECSIT Missense_Mutation p.P259R 0.11 tolerated(0.12) possibly_damaging(0.875) TCGA-AR-A24U-01 19 42911525 42911525 C T LIPE Silent p.L646L 0.25 TCGA-AR-A24U-01 1 110279617 110279617 G A GSTM3 3'UTR 0.26 TCGA-AR-A24U-01 1 201837778 201837778 C T IPO9 Missense_Mutation p.P620S 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-AR-A24U-01 1 236388437 236388437 G A ERO1LB Missense_Mutation p.S352F 0.11 deleterious(0) probably_damaging(0.95) TCGA-AR-A24U-01 1 60073504 60073504 C T FGGY Silent p.G311G 0.19 TCGA-AR-A24U-01 1 70758133 70758133 G A ANKRD13C Nonsense_Mutation p.R385* 0.06 TCGA-AR-A24U-01 20 44693794 44693794 C G NCOA5 Missense_Mutation p.E235Q 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-AR-A24U-01 20 61939943 61939943 C G COL20A1 Silent p.G275G 0.29 TCGA-AR-A24U-01 21 36171674 36171680 GTGCACA - RUNX1 Frame_Shift_Del p.V296Qfs*13 0.44 TCGA-AR-A24U-01 22 37266473 37266473 C G NCF4 Missense_Mutation p.P120R 0.24 deleterious(0) probably_damaging(0.996) TCGA-AR-A24U-01 2 103040855 103040855 C T IL18RAP Missense_Mutation p.P187L 0.07 deleterious(0.02) possibly_damaging(0.507) TCGA-AR-A24U-01 2 169780189 169780189 C T ABCB11 Silent p.L1303L 0.11 TCGA-AR-A24U-01 2 179437569 179437569 C T TTN Silent p.L24430L 0.09 TCGA-AR-A24U-01 2 179437979 179437979 C T TTN Missense_Mutation p.E24294K 0.10 TCGA-AR-A24U-01 2 179438786 179438786 C G TTN Missense_Mutation p.E24025Q 0.14 TCGA-AR-A24U-01 2 79255457 79255457 G A REG3G 3'UTR 0.10 TCGA-AR-A24U-01 3 100569509 100569509 G A ABI3BP Missense_Mutation p.T432I 0.11 deleterious(0) possibly_damaging(0.507) TCGA-AR-A24U-01 3 100963041 100963041 C T IMPG2 Missense_Mutation p.V712I 0.14 tolerated(1) benign(0.001) TCGA-AR-A24U-01 3 167437925 167437925 C G PDCD10 Missense_Mutation p.E7D 0.12 tolerated_low_confidence(0.61) benign(0.001) TCGA-AR-A24U-01 3 196054386 196054386 C A TM4SF19 Missense_Mutation p.A26S 0.32 tolerated(0.12) benign(0.203) TCGA-AR-A24U-01 4 55976674 55976674 G A KDR Missense_Mutation p.T384M 0.08 tolerated(0.1) benign(0.094) TCGA-AR-A24U-01 6 33288266 33288266 A C DAXX Missense_Mutation p.M381R 0.17 tolerated(0.42) benign(0.02) TCGA-AR-A24U-01 7 12620847 12620847 G A SCIN Splice_Site p.X172_splice 0.08 TCGA-AR-A24U-01 7 128658078 128658078 G C TNPO3 Missense_Mutation p.S85C 0.12 deleterious(0) possibly_damaging(0.841) TCGA-AR-A24U-01 7 50467924 50467924 G A IKZF1 Missense_Mutation p.E345K 0.33 tolerated(0.18) benign(0.077) TCGA-AR-A24U-01 8 103301755 103301755 G A UBR5 Missense_Mutation p.R1547C 0.08 deleterious(0.04) possibly_damaging(0.53) TCGA-AR-A24U-01 8 119452090 119452090 G C SAMD12 Missense_Mutation p.F101L 0.16 tolerated(0.06) probably_damaging(0.982) TCGA-AR-A24U-01 8 119452167 119452167 G A SAMD12 Silent p.L76L 0.24 TCGA-AR-A24U-01 X 151900087 151900087 G C MAGEA12 Silent p.V238V 0.12 TCGA-AR-A24U-01 X 15301740 15301740 G A ASB11 Missense_Mutation p.L287F 0.11 deleterious(0) probably_damaging(0.949) TCGA-AR-A24U-01 X 86772968 86772968 T A KLHL4 Missense_Mutation p.H24Q 0.11 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-AR-A24V-01 10 74987940 74987940 C A FAM149B1 Missense_Mutation p.P341T 0.11 tolerated(0.74) benign(0.003) TCGA-AR-A24V-01 11 51412226 51412226 A T OR4A5 Missense_Mutation p.M57K 0.37 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-AR-A24V-01 11 66393101 66393101 G A RBM14 Missense_Mutation p.R585Q 0.74 tolerated(0.1) unknown(0) TCGA-AR-A24V-01 12 20852607 20852607 G A SLCO1C1 Missense_Mutation p.E33K 0.11 tolerated(1) benign(0.001) TCGA-AR-A24V-01 12 88505008 88505008 G C CEP290 Missense_Mutation p.Q780E 0.21 benign(0.246) TCGA-AR-A24V-01 13 103388683 103388683 G A CCDC168 Silent p.F159F 0.58 TCGA-AR-A24V-01 15 101019663 101019663 T C CERS3 Silent p.L162L 0.49 TCGA-AR-A24V-01 16 27492404 27492404 C A GTF3C1 Missense_Mutation p.A1398S 0.35 tolerated(0.59) benign(0.019) TCGA-AR-A24V-01 16 81314502 81314502 C G BCMO1 Missense_Mutation p.T381R 0.59 deleterious(0) probably_damaging(0.993) TCGA-AR-A24V-01 17 3435985 3435985 G A TRPV3 Missense_Mutation p.P344L 0.50 deleterious(0) probably_damaging(0.989) TCGA-AR-A24V-01 17 62019253 62019253 G A SCN4A Silent p.R1463R 0.15 TCGA-AR-A24V-01 17 7366623 7366623 G A ZBTB4 Missense_Mutation p.R560W 0.68 benign(0.446) TCGA-AR-A24V-01 18 34298164 34298164 C G FHOD3 Missense_Mutation p.A793G 0.33 tolerated(0.23) benign(0.082) TCGA-AR-A24V-01 19 54481413 54481413 C T CACNG8 Silent p.G99G 0.29 TCGA-AR-A24V-01 1 152279990 152279990 C A FLG Missense_Mutation p.G2458C 0.05 probably_damaging(0.979) TCGA-AR-A24V-01 1 246714526 246714526 C T TFB2M Missense_Mutation p.V262I 0.36 deleterious(0.04) benign(0.338) TCGA-AR-A24V-01 22 46657914 46657914 G A PKDREJ Missense_Mutation p.R436W 0.24 deleterious(0) probably_damaging(0.939) TCGA-AR-A24V-01 2 152139454 152139454 A G NMI Silent p.A3A 0.45 TCGA-AR-A24V-01 2 202446931 202446931 G A ALS2CR11 Missense_Mutation p.R176C 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-AR-A24V-01 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.31 deleterious(0) probably_damaging(0.929) TCGA-AR-A24V-01 3 9068659 9068659 C T SRGAP3 Silent p.P520P 0.23 TCGA-AR-A24V-01 4 48591834 48591834 T A FRYL Missense_Mutation p.D523V 0.44 deleterious(0) probably_damaging(1) TCGA-AR-A24V-01 5 31448657 31448657 G C DROSHA Missense_Mutation p.S960W 0.06 deleterious(0) probably_damaging(0.991) TCGA-AR-A24V-01 5 74014695 74014695 C G HEXB Missense_Mutation p.S439C 0.16 deleterious(0) possibly_damaging(0.535) TCGA-AR-A24V-01 7 38471799 38471799 T A AMPH Missense_Mutation p.D383V 0.26 deleterious(0) probably_damaging(0.912) TCGA-AR-A24V-01 8 51503450 51503450 C A SNTG1 Silent p.I274I 0.19 TCGA-AR-A24V-01 8 65528612 65528612 T C CYP7B1 Silent p.K162K 0.11 TCGA-AR-A24V-01 X 128948763 128948763 C T ZDHHC9 Missense_Mutation p.D166N 0.31 deleterious(0) probably_damaging(0.997) TCGA-AR-A24W-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.22 TCGA-AR-A24W-01 11 89774242 89774242 G A TRIM49C Missense_Mutation p.E295K 0.09 tolerated(0.94) benign(0.005) TCGA-AR-A24W-01 11 93913971 93913971 G A PANX1 Missense_Mutation p.S406N 0.06 tolerated(0.25) benign(0.002) TCGA-AR-A24W-01 12 108626668 108626668 C T WSCD2 Silent p.N380N 0.10 TCGA-AR-A24W-01 14 29237049 29237049 G T FOXG1 Silent p.A188A 0.21 TCGA-AR-A24W-01 16 50346035 50346035 G A ADCY7 Missense_Mutation p.R846H 0.20 deleterious(0.02) probably_damaging(0.967) TCGA-AR-A24W-01 17 53237255 53237255 C T STXBP4 Missense_Mutation p.P549S 0.08 tolerated_low_confidence(0.12) benign(0.01) TCGA-AR-A24W-01 19 50098208 50098208 G A PRR12 Missense_Mutation p.E206K 0.30 possibly_damaging(0.502) TCGA-AR-A24W-01 1 39798225 39798225 A T MACF1 Intron 0.08 TCGA-AR-A24W-01 2 15614399 15614399 C A NBAS Missense_Mutation p.G464V 0.07 tolerated(0.12) possibly_damaging(0.71) TCGA-AR-A24W-01 3 193174938 193174938 G A ATP13A4 Missense_Mutation p.P589L 0.29 deleterious(0) benign(0.159) TCGA-AR-A24W-01 5 138729106 138729106 G A PROB1 Silent p.G555G 0.15 TCGA-AR-A24W-01 6 31674688 31674688 C T LY6G6F Missense_Mutation p.A2V 0.10 tolerated_low_confidence(0.11) possibly_damaging(0.483) TCGA-AR-A24W-01 7 31146206 31146206 G A ADCYAP1R1 Missense_Mutation p.G467R 0.14 deleterious(0) probably_damaging(0.996) TCGA-AR-A24W-01 9 16552596 16552596 C T BNC2 Missense_Mutation p.E201K 0.22 deleterious(0) probably_damaging(0.994) TCGA-AR-A24X-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.29 TCGA-AR-A24X-01 11 1251759 1251759 C T MUC5B Missense_Mutation p.R467W 0.35 unknown(0) TCGA-AR-A24X-01 12 114395756 114395756 G A RBM19 Missense_Mutation p.S224L 0.29 tolerated(0.17) benign(0.014) TCGA-AR-A24X-01 12 129180412 129180412 C A TMEM132C Silent p.R565R 0.29 TCGA-AR-A24X-01 12 132466866 132466866 A G EP400 Missense_Mutation p.Q591R 0.32 unknown(0) TCGA-AR-A24X-01 13 75936354 75936354 G A TBC1D4 Silent p.F296F 0.19 TCGA-AR-A24X-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.29 deleterious(0) probably_damaging(0.999) TCGA-AR-A24X-01 14 55251070 55251070 A G SAMD4A Intron 0.30 TCGA-AR-A24X-01 16 14951455 14951455 C T NOMO1 Missense_Mutation p.T388M 0.05 tolerated(0.12) benign(0.032) TCGA-AR-A24X-01 16 1831382 1831382 A T SPSB3 Missense_Mutation p.W35R 0.10 deleterious_low_confidence(0.04) benign(0.005) TCGA-AR-A24X-01 16 68379634 68379634 G T PRMT7 Silent p.V328V 0.54 TCGA-AR-A24X-01 16 68862076 68862076 G T CDH1 Splice_Site p.X722_splice 0.46 TCGA-AR-A24X-01 16 87678238 87678238 G A JPH3 Missense_Mutation p.V253I 0.56 tolerated(0.37) benign(0.003) TCGA-AR-A24X-01 17 1340206 1340206 C T CRK Missense_Mutation p.R162Q 0.45 deleterious(0.01) benign(0.046) TCGA-AR-A24X-01 18 19444509 19444509 A G MIB1 Missense_Mutation p.D968G 0.07 deleterious(0) probably_damaging(0.99) TCGA-AR-A24X-01 19 42875614 42875614 C T MEGF8 Nonsense_Mutation p.R2350* 0.36 TCGA-AR-A24X-01 19 48821779 48821779 G A CCDC114 Silent p.S38S 0.41 TCGA-AR-A24X-01 19 51021711 51021711 G A LRRC4B Missense_Mutation p.T420M 0.45 deleterious(0) probably_damaging(1) TCGA-AR-A24X-01 1 143767825 143767825 A - PPIAL4G Frame_Shift_Del p.F8Lfs*32 0.30 TCGA-AR-A24X-01 1 39878515 39878515 A G KIAA0754 Missense_Mutation p.I724V 0.31 unknown(0) TCGA-AR-A24X-01 22 29141935 29141935 T A HSCB Missense_Mutation p.N169K 0.50 deleterious(0) probably_damaging(0.996) TCGA-AR-A24X-01 2 43971118 43971118 G T PLEKHH2 Missense_Mutation p.G1182V 0.39 deleterious(0.02) probably_damaging(0.957) TCGA-AR-A24X-01 3 132047117 132047117 C T ACPP Missense_Mutation p.R43W 0.26 deleterious(0) probably_damaging(1) TCGA-AR-A24X-01 4 186366612 186366612 T C CCDC110 3'UTR 0.10 TCGA-AR-A24X-01 5 40841761 40841761 A C CARD6 Silent p.R93R 0.32 TCGA-AR-A24X-01 5 43294939 43294939 G T HMGCS1 Nonsense_Mutation p.Y310* 0.14 TCGA-AR-A24X-01 6 160888652 160888652 C T LPAL2 RNA 0.18 TCGA-AR-A24X-01 6 46826226 46826226 G A GPR116 Silent p.C1138C 0.30 TCGA-AR-A24X-01 7 142021145 142021145 G T TRBV5-1 Missense_Mutation p.C42F 0.30 deleterious(0) probably_damaging(0.997) TCGA-AR-A24X-01 7 30825399 30825399 T A FAM188B Missense_Mutation p.F152I 0.36 tolerated(0.38) benign(0.005) TCGA-AR-A24X-01 9 139287147 139287147 C T SNAPC4 Missense_Mutation p.E239K 0.25 deleterious(0) probably_damaging(0.982) TCGA-AR-A24X-01 9 33135286 33135286 T C B4GALT1 Silent p.P183P 0.26 TCGA-AR-A24X-01 X 110951473 110951473 T C ALG13 Missense_Mutation p.L201P 0.38 tolerated_low_confidence(0.34) benign(0.001) TCGA-AR-A24X-01 X 118222466 118222466 C A KIAA1210 Silent p.L909L 0.39 TCGA-AR-A24X-01 X 129201171 129201171 C T ELF4 Missense_Mutation p.G506E 0.48 tolerated(0.48) possibly_damaging(0.793) TCGA-AR-A24X-01 X 38146402 38146402 C A RPGR Missense_Mutation p.G617V 0.14 benign(0.046) TCGA-AR-A24Z-01 10 26459429 26459429 A C MYO3A Missense_Mutation p.D1120A 0.18 tolerated(0.6) benign(0.002) TCGA-AR-A24Z-01 10 27294338 27294338 A T ANKRD26 3'UTR 0.85 TCGA-AR-A24Z-01 10 70644582 70644582 G C STOX1 Missense_Mutation p.V344L 0.21 deleterious(0) probably_damaging(0.998) TCGA-AR-A24Z-01 10 94235707 94235707 C G IDE Missense_Mutation p.K643N 0.16 tolerated(0.18) benign(0.059) TCGA-AR-A24Z-01 12 20801709 20801709 T A PDE3A Missense_Mutation p.F885I 0.44 deleterious(0) possibly_damaging(0.846) TCGA-AR-A24Z-01 12 70946687 70946687 C A PTPRB Nonsense_Mutation p.E1753* 0.27 TCGA-AR-A24Z-01 13 52693487 52693487 G A NEK5 Missense_Mutation p.P61L 0.47 deleterious(0) probably_damaging(0.993) TCGA-AR-A24Z-01 15 69329466 69329466 G T NOX5 Missense_Mutation p.L429F 0.31 deleterious(0.04) benign(0.248) TCGA-AR-A24Z-01 16 58438557 58438557 G T GINS3 Missense_Mutation p.G231V 0.28 deleterious(0.03) probably_damaging(0.99) TCGA-AR-A24Z-01 17 10318441 10318441 A G MYH8 Missense_Mutation p.I266T 0.34 deleterious(0) probably_damaging(0.982) TCGA-AR-A24Z-01 17 26370119 26370136 GCAGCCGCAGCAGCGGCT - NLK In_Frame_Del p.A78_A83del 0.91 TCGA-AR-A24Z-01 17 29184112 29184112 C T ATAD5 Silent p.S925S 0.04 TCGA-AR-A24Z-01 17 3119684 3119684 C T OR1A1 Missense_Mutation p.T257M 0.17 tolerated(0.32) benign(0.001) TCGA-AR-A24Z-01 19 39087977 39087977 G A MAP4K1 Missense_Mutation p.A609V 0.18 deleterious(0.05) possibly_damaging(0.611) TCGA-AR-A24Z-01 19 49110544 49110544 G C SPACA4 Missense_Mutation p.Q103H 0.21 tolerated(0.58) benign(0.05) TCGA-AR-A24Z-01 19 51629104 51629104 G A SIGLEC9 Silent p.T224T 0.19 TCGA-AR-A24Z-01 1 152882978 152882978 C A IVL Silent p.L235L 0.31 TCGA-AR-A24Z-01 1 158613112 158613115 CTGT - SPTA1 Frame_Shift_Del p.D1480Gfs*9 0.21 TCGA-AR-A24Z-01 1 209956212 209956212 G A C1orf74 Silent p.S256S 0.08 TCGA-AR-A24Z-01 1 247492666 247492666 C A ZNF496 Missense_Mutation p.R72L 0.29 deleterious(0) probably_damaging(0.911) TCGA-AR-A24Z-01 1 33117549 33117549 C T RBBP4 Silent p.I17I 0.19 TCGA-AR-A24Z-01 1 62455909 62455909 A C INADL Missense_Mutation p.N1247T 0.07 deleterious(0.01) possibly_damaging(0.905) TCGA-AR-A24Z-01 1 62456030 62456030 C T INADL Silent p.L1287L 0.05 TCGA-AR-A24Z-01 20 62859450 62859450 C T MYT1 Intron 0.29 TCGA-AR-A24Z-01 21 10951293 10951293 T C TPTE Missense_Mutation p.D140G 0.21 deleterious(0) probably_damaging(0.998) TCGA-AR-A24Z-01 21 45157140 45157140 G T PDXK Intron 0.56 TCGA-AR-A24Z-01 21 46875483 46875483 G A COL18A1 Silent p.L13L 0.33 TCGA-AR-A24Z-01 2 107032319 107032319 A T RGPD3 Missense_Mutation p.M1684K 0.25 tolerated_low_confidence(0.35) benign(0.025) TCGA-AR-A24Z-01 2 131486925 131486925 C - GPR148 Frame_Shift_Del p.L69Cfs*4 0.23 TCGA-AR-A24Z-01 2 166909415 166909415 G T SCN1A Missense_Mutation p.A214E 0.20 deleterious(0) probably_damaging(0.999) TCGA-AR-A24Z-01 2 179448488 179448488 G C TTN Missense_Mutation p.C21807W 0.23 TCGA-AR-A24Z-01 2 220437229 220437229 G A INHA Missense_Mutation p.A45T 0.43 tolerated(0.48) benign(0.002) TCGA-AR-A24Z-01 2 227979409 227979409 G A COL4A4 Missense_Mutation p.H165Y 0.24 possibly_damaging(0.623) TCGA-AR-A24Z-01 2 47202156 47202156 C T TTC7A Missense_Mutation p.R188C 0.37 deleterious(0) probably_damaging(0.962) TCGA-AR-A24Z-01 3 132319804 132319804 T C ACKR4 Missense_Mutation p.F188S 0.35 deleterious(0) possibly_damaging(0.88) TCGA-AR-A24Z-01 3 170078924 170078924 C G SKIL Missense_Mutation p.L269V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A24Z-01 3 178984566 178984566 G A KCNMB3 5'UTR 0.55 TCGA-AR-A24Z-01 3 193220428 193220428 C A ATP13A4 Missense_Mutation p.D79Y 0.67 deleterious(0) probably_damaging(1) TCGA-AR-A24Z-01 3 48459737 48459737 A T PLXNB1 Missense_Mutation p.C1029S 1.00 deleterious(0) probably_damaging(0.989) TCGA-AR-A24Z-01 3 57388140 57388140 G A DNAH12 Missense_Mutation p.P2303L 0.36 tolerated(0.6) benign(0.01) TCGA-AR-A24Z-01 4 17585198 17585198 G C LAP3 Missense_Mutation p.G158R 0.35 deleterious(0.03) probably_damaging(0.989) TCGA-AR-A24Z-01 4 47877233 47877233 C A NFXL1 Missense_Mutation p.L719F 0.16 deleterious(0.05) benign(0.361) TCGA-AR-A24Z-01 4 9446286 9446286 A C DEFB131 Silent p.G9G 0.32 TCGA-AR-A24Z-01 5 101572559 101572559 A G SLCO4C1 3'UTR 0.27 TCGA-AR-A24Z-01 6 147124876 147124876 C T ADGB Intron 0.45 TCGA-AR-A24Z-01 6 165801788 165801788 T A PDE10A Missense_Mutation p.Q604L 0.12 deleterious(0) possibly_damaging(0.721) TCGA-AR-A24Z-01 6 24515463 24515463 G A ALDH5A1 Silent p.K278K 0.08 TCGA-AR-A24Z-01 6 41874991 41874991 C T MED20 Missense_Mutation p.C153Y 0.14 deleterious(0) probably_damaging(1) TCGA-AR-A24Z-01 6 96053674 96053674 C T MANEA Missense_Mutation p.A261V 0.15 tolerated(0.54) benign(0.004) TCGA-AR-A24Z-01 7 148801215 148801215 G T ZNF425 Missense_Mutation p.A583E 0.56 tolerated(0.86) benign(0.004) TCGA-AR-A24Z-01 7 148802311 148802311 A C ZNF425 Missense_Mutation p.C218G 0.29 tolerated(0.37) benign(0.002) TCGA-AR-A24Z-01 7 21698446 21698446 A C DNAH11 Missense_Mutation p.T1714P 0.29 possibly_damaging(0.715) TCGA-AR-A24Z-01 8 139278030 139278030 G A FAM135B Silent p.V71V 0.09 TCGA-AR-A24Z-01 9 12702372 12702372 G A TYRP1 Missense_Mutation p.V339I 0.12 tolerated(0.09) benign(0.054) TCGA-AR-A24Z-01 9 130825802 130825802 G A NAIF1 Missense_Mutation p.R297C 0.28 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-AR-A24Z-01 9 136291344 136291344 A T ADAMTS13 Missense_Mutation p.N189Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-AR-A24Z-01 9 139259009 139259009 G A CARD9 Silent p.D479D 0.27 TCGA-AR-A24Z-01 X 148628334 148628334 C G CXorf40A Silent p.P101P 0.25 TCGA-AR-A24Z-01 X 71426994 71426994 G A ERCC6L Silent p.V541V 0.38 TCGA-AR-A250-01 10 120927956 120927956 C T PRDX3 3'UTR 0.20 TCGA-AR-A250-01 10 128796492 128796492 C T DOCK1 Missense_Mutation p.P249L 0.10 deleterious(0.01) possibly_damaging(0.713) TCGA-AR-A250-01 10 135438682 135438682 G T FRG2B Missense_Mutation p.A253D 0.32 deleterious(0.01) possibly_damaging(0.525) TCGA-AR-A250-01 10 24508619 24508619 A G KIAA1217 Silent p.E45E 0.48 TCGA-AR-A250-01 10 26417432 26417434 TAT - MYO3A In_Frame_Del p.Y745del 0.12 TCGA-AR-A250-01 10 90512357 90512357 C G LIPK Silent p.P348P 0.29 TCGA-AR-A250-01 11 10824832 10824832 C A EIF4G2 Missense_Mutation p.D275Y 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A250-01 11 134131253 134131253 T C ACAD8 Missense_Mutation p.L309P 0.18 deleterious(0) probably_damaging(0.997) TCGA-AR-A250-01 11 19372466 19372466 C T NAV2 5'UTR 0.20 TCGA-AR-A250-01 11 26587236 26587236 G C MUC15 Nonsense_Mutation p.S84* 0.05 TCGA-AR-A250-01 11 30900206 30900206 C T DCDC1 Silent p.Q1759Q 0.09 TCGA-AR-A250-01 11 48285568 48285568 G T OR4X1 Silent p.V52V 0.16 TCGA-AR-A250-01 11 55999885 55999885 C G OR5T2 Missense_Mutation p.L259F 0.07 tolerated(1) benign(0.001) TCGA-AR-A250-01 11 6235673 6235673 G A FAM160A2 Missense_Mutation p.A856V 0.19 tolerated(0.31) benign(0.006) TCGA-AR-A250-01 11 66026116 66026116 C T KLC2 Silent p.I17I 0.12 TCGA-AR-A250-01 11 66742960 66742960 G A C11orf86 Missense_Mutation p.E43K 0.39 tolerated(0.09) benign(0.001) TCGA-AR-A250-01 11 74617338 74617338 C G XRRA1 Missense_Mutation p.D309H 0.12 deleterious(0.02) possibly_damaging(0.792) TCGA-AR-A250-01 11 82693203 82693203 G A RAB30 3'UTR 0.58 TCGA-AR-A250-01 12 11461753 11461753 C T PRB4 Missense_Mutation p.G55E 0.22 tolerated_low_confidence(0.15) unknown(0) TCGA-AR-A250-01 12 11546342 11546342 G A PRB2 Missense_Mutation p.P224S 0.06 tolerated(0.72) unknown(0) TCGA-AR-A250-01 12 302499 302499 G A SLC6A12 Missense_Mutation p.R492W 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A250-01 13 78492504 78492504 C T EDNRB Missense_Mutation p.A159T 0.48 tolerated(0.1) benign(0.164) TCGA-AR-A250-01 14 106308309 106308312 TCTC - IGHD Frame_Shift_Del p.E155Qfs*18 0.08 TCGA-AR-A250-01 14 47120792 47120792 C T RPL10L Missense_Mutation p.G50S 0.12 tolerated(0.35) benign(0.064) TCGA-AR-A250-01 14 91360826 91360826 C A RPS6KA5 Missense_Mutation p.M525I 0.21 tolerated(0.17) benign(0.058) TCGA-AR-A250-01 15 101120811 101120811 G A LINS Silent p.N79N 0.16 TCGA-AR-A250-01 15 20666554 20666554 G C HERC2P3 RNA 0.18 TCGA-AR-A250-01 15 38808408 38808408 C T RASGRP1 Missense_Mutation p.R222Q 0.10 tolerated(0.36) benign(0.235) TCGA-AR-A250-01 15 40913863 40913863 T G CASC5 Missense_Mutation p.D493E 0.14 tolerated(0.22) possibly_damaging(0.881) TCGA-AR-A250-01 15 43813808 43813808 G T MAP1A Missense_Mutation p.G46V 0.13 probably_damaging(0.999) TCGA-AR-A250-01 15 56207669 56207669 C T NEDD4 Missense_Mutation p.R454Q 0.48 tolerated_low_confidence(1) benign(0) TCGA-AR-A250-01 16 2336816 2336816 C A ABCA3 Missense_Mutation p.A1053S 0.09 tolerated(0.45) benign(0.04) TCGA-AR-A250-01 16 33647541 33647541 T G RP11-812E19.9 Missense_Mutation p.E20A 0.30 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-AR-A250-01 16 74943795 74943795 C A WDR59 Silent p.L470L 0.18 TCGA-AR-A250-01 16 83948758 83948758 C T MLYCD Silent p.S382S 0.24 TCGA-AR-A250-01 16 89349778 89349778 C G ANKRD11 Missense_Mutation p.E1058Q 0.16 probably_damaging(0.993) TCGA-AR-A250-01 17 37331819 37331819 G A CACNB1 Missense_Mutation p.P475L 0.31 tolerated_low_confidence(0.15) benign(0.011) TCGA-AR-A250-01 17 40951117 40951117 C T CNTD1 Missense_Mutation p.S11F 0.30 deleterious(0.05) benign(0.015) TCGA-AR-A250-01 17 48151330 48151330 C T ITGA3 Missense_Mutation p.H403Y 0.20 tolerated(1) probably_damaging(0.974) TCGA-AR-A250-01 17 48151340 48151340 C T ITGA3 Missense_Mutation p.S406F 0.20 deleterious(0.02) possibly_damaging(0.894) TCGA-AR-A250-01 17 48191337 48191337 C T SAMD14 Missense_Mutation p.R378Q 0.06 tolerated(1) benign(0.073) TCGA-AR-A250-01 17 61994796 61994796 G C GH1 Nonsense_Mutation p.S176* 0.11 TCGA-AR-A250-01 17 62289958 62289958 A G TEX2 Silent p.D540D 0.06 TCGA-AR-A250-01 17 6606341 6606341 C T SLC13A5 Missense_Mutation p.A222T 0.19 deleterious(0.04) probably_damaging(0.994) TCGA-AR-A250-01 18 12493166 12493166 C T SPIRE1 Missense_Mutation p.R365Q 0.05 tolerated(0.25) probably_damaging(0.924) TCGA-AR-A250-01 18 12984036 12984036 C T SEH1L Intron 0.20 TCGA-AR-A250-01 18 34415224 34415224 C G KIAA1328 Nonsense_Mutation p.S41* 0.11 TCGA-AR-A250-01 18 54270189 54270189 C G TXNL1 3'UTR 0.24 TCGA-AR-A250-01 19 10394280 10394280 G A ICAM1 Missense_Mutation p.R152H 0.33 deleterious(0.03) probably_damaging(0.923) TCGA-AR-A250-01 19 16764862 16764862 T - SMIM7 Frame_Shift_Del p.M66Cfs*4 0.27 TCGA-AR-A250-01 19 17740081 17740081 C A UNC13A Missense_Mutation p.A1241S 0.19 tolerated(0.22) benign(0.075) TCGA-AR-A250-01 19 33355014 33355014 C T SLC7A9 Missense_Mutation p.A156T 0.12 deleterious(0.02) possibly_damaging(0.477) TCGA-AR-A250-01 19 41003406 41003406 G A SPTBN4 Missense_Mutation p.V227M 0.09 deleterious(0.02) benign(0.434) TCGA-AR-A250-01 19 54210759 54210759 G C MIR520C RNA 0.05 TCGA-AR-A250-01 19 55399791 55399791 G C FCAR Intron 0.33 TCGA-AR-A250-01 19 55441984 55441984 G A NLRP7 Missense_Mutation p.A898V 0.08 tolerated(0.17) benign(0.001) TCGA-AR-A250-01 1 10161225 10161225 G A UBE4B Missense_Mutation p.R136Q 0.18 deleterious(0.02) benign(0.238) TCGA-AR-A250-01 1 113058811 113058811 C A WNT2B Silent p.V151V 0.57 TCGA-AR-A250-01 1 115130504 115130504 G C DENND2C Missense_Mutation p.S834C 0.17 deleterious(0) probably_damaging(1) TCGA-AR-A250-01 1 152191409 152191409 C G HRNR Missense_Mutation p.G899A 0.09 unknown(0) TCGA-AR-A250-01 1 153065896 153065896 G C SPRR2E 3'UTR 0.10 TCGA-AR-A250-01 1 154842168 154842168 G C KCNN3 Silent p.L91L 0.09 TCGA-AR-A250-01 1 156849829 156849829 G A NTRK1 Silent p.P695P 0.87 TCGA-AR-A250-01 1 158064789 158064789 G A KIRREL Missense_Mutation p.R718Q 0.12 tolerated(0.57) benign(0.268) TCGA-AR-A250-01 1 158647585 158647585 T C SPTA1 Silent p.E284E 0.56 TCGA-AR-A250-01 1 158725094 158725094 C T OR6K6 Silent p.I163I 0.10 TCGA-AR-A250-01 1 161137894 161137894 G A PPOX Missense_Mutation p.A150T 0.15 tolerated(0.32) benign(0.001) TCGA-AR-A250-01 1 169509917 169509917 G C F5 Missense_Mutation p.Q1471E 0.12 tolerated(0.07) possibly_damaging(0.611) TCGA-AR-A250-01 1 169510228 169510228 G A F5 Missense_Mutation p.S1367F 0.08 tolerated_low_confidence(0.35) benign(0.077) TCGA-AR-A250-01 1 169510931 169510931 G C F5 Missense_Mutation p.Q1133E 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.709) TCGA-AR-A250-01 1 175365832 175365832 G A TNR Missense_Mutation p.A363V 0.42 tolerated(0.38) benign(0.002) TCGA-AR-A250-01 1 202733212 202733212 C T KDM5B Missense_Mutation p.R258H 0.07 deleterious(0.01) probably_damaging(0.953) TCGA-AR-A250-01 1 213178661 213178661 C A ANGEL2 Missense_Mutation p.R283I 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A250-01 1 240341300 240341300 G C FMN2 Missense_Mutation p.R621P 0.06 unknown(0) TCGA-AR-A250-01 1 27333231 27333231 C T FAM46B Missense_Mutation p.R161Q 0.18 deleterious(0.04) probably_damaging(0.932) TCGA-AR-A250-01 1 53715175 53715175 G A LRP8 Silent p.T910T 0.33 TCGA-AR-A250-01 1 64605929 64605929 G C ROR1 Missense_Mutation p.D250H 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-AR-A250-01 20 53092395 53092395 C T DOK5 5'UTR 0.29 TCGA-AR-A250-01 21 47546031 47546031 G A COL6A2 Missense_Mutation p.E768K 0.20 deleterious(0.02) benign(0.271) TCGA-AR-A250-01 22 28692181 28692184 CCTA - TTC28 Splice_Site p.X311_splice 0.35 TCGA-AR-A250-01 22 39715633 39715633 G A RPL3 5'UTR 0.27 TCGA-AR-A250-01 2 113675354 113675354 G T IL37 Missense_Mutation p.K136N 0.30 deleterious(0.02) possibly_damaging(0.889) TCGA-AR-A250-01 2 145187397 145187397 C A ZEB2 Missense_Mutation p.E90D 0.11 tolerated(0.91) benign(0.002) TCGA-AR-A250-01 2 168101720 168101720 G T XIRP2 Missense_Mutation p.R1273I 0.07 probably_damaging(0.979) TCGA-AR-A250-01 2 183699478 183699478 G C FRZB 3'UTR 0.20 TCGA-AR-A250-01 2 187368810 187368810 T G ZC3H15 Missense_Mutation p.W196G 0.08 tolerated(0.05) benign(0.242) TCGA-AR-A250-01 2 211053760 211053760 T A ACADL Missense_Mutation p.R406S 0.07 deleterious(0) probably_damaging(0.99) TCGA-AR-A250-01 2 211053761 211053761 C G ACADL Missense_Mutation p.R406T 0.06 deleterious(0) probably_damaging(0.99) TCGA-AR-A250-01 2 224903227 224903227 C G SERPINE2 5'UTR 0.10 TCGA-AR-A250-01 2 23980516 23980516 C A ATAD2B Nonsense_Mutation p.E1284* 0.07 TCGA-AR-A250-01 2 24194187 24194187 A G UBXN2A Missense_Mutation p.N28S 0.30 tolerated(0.82) benign(0.002) TCGA-AR-A250-01 2 40405590 40405590 T C SLC8A1 Missense_Mutation p.K618E 0.24 deleterious(0.03) probably_damaging(1) TCGA-AR-A250-01 2 48026748 48026748 C G MSH6 Silent p.L542L 0.09 TCGA-AR-A250-01 2 61473500 61473500 G A USP34 Silent p.I2169I 0.15 TCGA-AR-A250-01 2 86276113 86276113 C T POLR1A Missense_Mutation p.R843Q 0.15 tolerated(1) benign(0.006) TCGA-AR-A250-01 2 90458655 90458655 A T CH17-132F21.1 Missense_Mutation p.S111C 0.05 TCGA-AR-A250-01 3 111603283 111603283 G A PHLDB2 Missense_Mutation p.G120E 0.15 tolerated_low_confidence(0.09) benign(0.016) TCGA-AR-A250-01 3 113377608 113377608 G C KIAA2018 Missense_Mutation p.S974C 0.08 possibly_damaging(0.867) TCGA-AR-A250-01 3 125694466 125694466 C T ROPN1B Silent p.V59V 0.14 TCGA-AR-A250-01 3 152554344 152554344 C T P2RY1 Missense_Mutation p.S258L 0.26 deleterious(0) probably_damaging(0.994) TCGA-AR-A250-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.09 TCGA-AR-A250-01 3 183528415 183528415 G A YEATS2 3'UTR 0.14 TCGA-AR-A250-01 3 183643468 183643468 C G ABCC5 Missense_Mutation p.E1363Q 0.12 deleterious(0.01) possibly_damaging(0.596) TCGA-AR-A250-01 3 18393687 18393687 C T SATB1 Missense_Mutation p.G526R 0.13 deleterious(0) probably_damaging(1) TCGA-AR-A250-01 3 48538577 48538577 C T SHISA5 Missense_Mutation p.E76K 0.15 tolerated(0.59) benign(0.019) TCGA-AR-A250-01 3 51312575 51312575 G C DOCK3 Missense_Mutation p.E872Q 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A250-01 3 58849603 58849603 G A C3orf67 Missense_Mutation p.P300L 0.23 deleterious(0) possibly_damaging(0.654) TCGA-AR-A250-01 3 97596567 97596567 G A CRYBG3 Missense_Mutation p.D229N 0.14 tolerated(0.13) benign(0.01) TCGA-AR-A250-01 4 110635396 110635396 A T PLA2G12A 3'UTR 0.36 TCGA-AR-A250-01 4 146648104 146648104 G C C4orf51 Missense_Mutation p.D117H 0.09 tolerated(0.17) possibly_damaging(0.815) TCGA-AR-A250-01 4 170057504 170057504 C T SH3RF1 Missense_Mutation p.E345K 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-AR-A250-01 4 187540670 187540670 G A FAT1 Missense_Mutation p.T2357M 0.08 possibly_damaging(0.505) TCGA-AR-A250-01 4 2691340 2691340 G C FAM193A Missense_Mutation p.W522C 0.12 deleterious(0) probably_damaging(0.995) TCGA-AR-A250-01 4 38020062 38020062 C T TBC1D1 Nonsense_Mutation p.Q324* 0.12 TCGA-AR-A250-01 4 39439551 39439551 C T KLB Missense_Mutation p.T514M 0.13 tolerated(0.08) possibly_damaging(0.886) TCGA-AR-A250-01 4 68708298 68708299 TG - TMPRSS11D Frame_Shift_Del p.I98Mfs*12 0.26 TCGA-AR-A250-01 5 121786909 121786909 G C SNCAIP Missense_Mutation p.Q789H 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-AR-A250-01 5 169018164 169018164 T A SPDL1 Missense_Mutation p.L91Q 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-AR-A250-01 5 179149818 179149818 C T CANX Missense_Mutation p.P399L 0.18 deleterious(0.01) possibly_damaging(0.831) TCGA-AR-A250-01 5 37310731 37310731 C T NUP155 Missense_Mutation p.A851T 0.26 tolerated(0.63) benign(0.019) TCGA-AR-A250-01 5 50090154 50090154 C G PARP8 Missense_Mutation p.S284C 0.18 deleterious_low_confidence(0.04) benign(0.046) TCGA-AR-A250-01 5 63257013 63257013 C T HTR1A Silent p.P178P 0.13 TCGA-AR-A250-01 5 75979665 75979665 C A IQGAP2 Silent p.T1276T 0.08 TCGA-AR-A250-01 5 99921889 99921889 G C FAM174A 3'UTR 0.12 TCGA-AR-A250-01 6 119327762 119327762 G C FAM184A Silent p.L555L 0.17 TCGA-AR-A250-01 6 13791083 13791083 C T MCUR1 Silent p.T346T 0.11 TCGA-AR-A250-01 6 138200310 138200310 G A TNFAIP3 Silent p.P576P 0.16 TCGA-AR-A250-01 6 138751809 138751809 G A NHSL1 Nonsense_Mutation p.R1229* 0.27 TCGA-AR-A250-01 6 151055105 151055105 C T PLEKHG1 Silent p.N96N 0.12 TCGA-AR-A250-01 6 18457515 18457515 C G RNF144B Missense_Mutation p.S154W 0.07 deleterious(0) benign(0.434) TCGA-AR-A250-01 6 24658889 24658889 C A TDP2 Nonsense_Mutation p.E109* 0.10 TCGA-AR-A250-01 6 25973483 25973483 G A TRIM38 Missense_Mutation p.D282N 0.09 tolerated(0.12) benign(0.142) TCGA-AR-A250-01 6 32709257 32709257 G A HLA-DQA2 Missense_Mutation p.A13T 0.10 tolerated(0.88) unknown(0) TCGA-AR-A250-01 6 35423762 35423762 C G FANCE Missense_Mutation p.Q163E 0.26 deleterious(0.01) benign(0.037) TCGA-AR-A250-01 6 90573973 90573973 C T CASP8AP2 RNA 0.16 TCGA-AR-A250-01 7 44739823 44739823 C G OGDH Missense_Mutation p.F838L 0.09 tolerated(0.56) benign(0.217) TCGA-AR-A250-01 7 95614255 95614255 G C DYNC1I1 Missense_Mutation p.D254H 0.10 deleterious(0) possibly_damaging(0.886) TCGA-AR-A250-01 8 100403813 100403813 T G VPS13B Missense_Mutation p.M988R 0.08 tolerated(0.34) benign(0.125) TCGA-AR-A250-01 8 120233875 120233875 C G MAL2 Missense_Mutation p.L61V 0.09 tolerated(0.68) possibly_damaging(0.828) TCGA-AR-A250-01 8 123964966 123964966 A G ZHX2 Missense_Mutation p.K406E 0.13 tolerated(0.05) probably_damaging(0.997) TCGA-AR-A250-01 8 125603433 125603433 C T MTSS1 Missense_Mutation p.M84I 0.08 deleterious(0.03) benign(0.146) TCGA-AR-A250-01 8 126445703 126445704 - C TRIB1 Frame_Shift_Ins p.Y170Lfs*40 0.09 TCGA-AR-A250-01 8 130774954 130774954 G C GSDMC Silent p.L198L 0.13 TCGA-AR-A250-01 8 133771110 133771110 G C TMEM71 Missense_Mutation p.Q6E 0.09 deleterious(0.02) possibly_damaging(0.469) TCGA-AR-A250-01 8 146017200 146017200 C T RPL8 Missense_Mutation p.E80K 0.27 deleterious(0) probably_damaging(0.994) TCGA-AR-A250-01 8 2976110 2976110 C A CSMD1 Splice_Site p.X2081_splice 0.10 TCGA-AR-A250-01 8 39495098 39495098 G A ADAM18 Missense_Mutation p.E235K 0.36 deleterious(0) possibly_damaging(0.905) TCGA-AR-A250-01 8 39495121 39495121 G A ADAM18 Silent p.Q242Q 0.27 TCGA-AR-A250-01 8 86572867 86572867 T G REXO1L1P 3'UTR 0.10 TCGA-AR-A250-01 8 92007730 92007730 A G TMEM55A 3'UTR 0.22 TCGA-AR-A250-01 9 103070896 103070896 T A TEX10 Missense_Mutation p.D784V 0.11 deleterious(0) probably_damaging(0.984) TCGA-AR-A250-01 9 103092306 103092306 C G TEX10 Missense_Mutation p.E466Q 0.09 tolerated(0.07) benign(0.183) TCGA-AR-A250-01 9 131271239 131271239 G A GLE1 Missense_Mutation p.E62K 0.05 tolerated(0.4) benign(0.002) TCGA-AR-A250-01 9 134454898 134454898 C T RAPGEF1 Missense_Mutation p.E1092K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.64) TCGA-AR-A250-01 9 139259656 139259656 G A CARD9 Silent p.G457G 0.32 TCGA-AR-A250-01 9 19516083 19516083 C T SLC24A2 3'UTR 0.27 TCGA-AR-A250-01 9 40705911 40705912 - A SPATA31A3 Frame_Shift_Ins p.T1192Nfs*14 0.65 TCGA-AR-A250-01 9 80049397 80049397 G C GNA14 Silent p.V117V 0.12 TCGA-AR-A250-01 9 87285820 87285820 G A NTRK2 Missense_Mutation p.V53M 0.08 tolerated(0.13) benign(0.01) TCGA-AR-A250-01 9 99521431 99521431 G C ZNF510 Missense_Mutation p.Q561E 0.08 tolerated(0.58) possibly_damaging(0.831) TCGA-AR-A250-01 X 106116842 106116842 C G TBC1D8B Missense_Mutation p.H1004D 0.26 tolerated(0.05) probably_damaging(0.917) TCGA-AR-A250-01 X 49071972 49071972 C T CACNA1F Missense_Mutation p.E1101K 0.20 deleterious(0.02) possibly_damaging(0.458) TCGA-AR-A250-01 X 88008722 88008722 C T CPXCR1 Missense_Mutation p.H103Y 0.67 tolerated(0.6) benign(0.008) TCGA-AR-A251-01 10 25887795 25887795 C G GPR158 Silent p.S1080S 0.15 TCGA-AR-A251-01 10 29812859 29812859 C T SVIL Missense_Mutation p.R895H 0.84 tolerated_low_confidence(0.6) benign(0.008) TCGA-AR-A251-01 10 43619167 43619173 CCCCTAT - RET Frame_Shift_Del p.P951Lfs*12 0.12 TCGA-AR-A251-01 10 68979558 68979558 A T CTNNA3 Missense_Mutation p.L217H 0.20 deleterious(0) probably_damaging(0.963) TCGA-AR-A251-01 10 888903 888904 - GTGAT LARP4B Frame_Shift_Ins p.D206Sfs*6 0.30 TCGA-AR-A251-01 10 96702192 96702192 A G CYP2C9 Intron 0.37 TCGA-AR-A251-01 10 98741410 98741410 C G C10orf12 Missense_Mutation p.S88C 0.72 deleterious(0.01) probably_damaging(0.922) TCGA-AR-A251-01 11 100814496 100814496 C T ARHGAP42 Missense_Mutation p.L314F 0.28 tolerated(0.09) benign(0.004) TCGA-AR-A251-01 11 103128341 103128341 G A DYNC2H1 Missense_Mutation p.R3496Q 0.55 probably_damaging(0.989) TCGA-AR-A251-01 11 105845179 105845179 A G GRIA4 Intron 0.57 TCGA-AR-A251-01 11 111889895 111889895 T A DIXDC1 3'UTR 0.57 TCGA-AR-A251-01 11 111889896 111889896 G T DIXDC1 3'UTR 0.55 TCGA-AR-A251-01 11 123489814 123489814 G A GRAMD1B Splice_Site p.X670_splice 0.89 TCGA-AR-A251-01 11 124310048 124310048 A G OR8B8 Nonstop_Mutation p.*312Rext*? 0.19 TCGA-AR-A251-01 11 128354782 128354782 G A ETS1 Silent p.D266D 0.52 TCGA-AR-A251-01 11 17408655 17408655 C T KCNJ11 Silent p.V328V 0.40 TCGA-AR-A251-01 11 18956199 18956199 T C MRGPRX1 Missense_Mutation p.N45D 0.39 deleterious(0) probably_damaging(0.999) TCGA-AR-A251-01 11 43427136 43427136 G A TTC17 Missense_Mutation p.E518K 0.18 tolerated(0.58) possibly_damaging(0.504) TCGA-AR-A251-01 11 4661473 4661473 G T OR51D1 Silent p.G151G 0.55 TCGA-AR-A251-01 11 4790519 4790519 C A OR51F1 Missense_Mutation p.G210V 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-AR-A251-01 11 48511007 48511007 C A OR4A47 Missense_Mutation p.H221Q 0.39 tolerated_low_confidence(0.06) benign(0.057) TCGA-AR-A251-01 11 5221581 5221581 G A OR51V1 Missense_Mutation p.S117F 0.46 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 11 5221599 5221599 T A OR51V1 Missense_Mutation p.Y111F 0.54 tolerated(1) benign(0.107) TCGA-AR-A251-01 11 55322321 55322321 G C OR4C15 Missense_Mutation p.C180S 0.25 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-AR-A251-01 11 59190015 59190015 A T OR5A2 Missense_Mutation p.S138T 0.45 tolerated(0.12) benign(0.007) TCGA-AR-A251-01 11 59283150 59283150 C G OR4D9 Missense_Mutation p.I255M 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-AR-A251-01 11 59434423 59434423 A C PATL1 Missense_Mutation p.C10W 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AR-A251-01 11 62287791 62287791 G C AHNAK Missense_Mutation p.P4700A 0.17 probably_damaging(0.971) TCGA-AR-A251-01 11 6236092 6236092 G C FAM160A2 Missense_Mutation p.N769K 0.38 deleterious(0) possibly_damaging(0.853) TCGA-AR-A251-01 11 64517909 64517909 C G PYGM Missense_Mutation p.E706Q 0.14 tolerated(0.14) possibly_damaging(0.829) TCGA-AR-A251-01 11 64674273 64674273 C A ATG2A Missense_Mutation p.K949N 0.38 tolerated(0.49) benign(0.002) TCGA-AR-A251-01 11 70171060 70171060 G T PPFIA1 Silent p.V158V 0.22 TCGA-AR-A251-01 11 74009272 74009272 G A P4HA3 Silent p.A234A 0.27 TCGA-AR-A251-01 12 100451948 100451948 G T UHRF1BP1L Missense_Mutation p.T1036N 0.59 tolerated(0.57) benign(0.002) TCGA-AR-A251-01 12 108006618 108006618 T G BTBD11 Missense_Mutation p.L624R 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 12 108685751 108685751 A T CMKLR1 Missense_Mutation p.L330H 0.72 deleterious(0) possibly_damaging(0.75) TCGA-AR-A251-01 12 120602277 120602277 C T GCN1L1 Missense_Mutation p.A571T 0.26 benign(0.335) TCGA-AR-A251-01 12 122018914 122018914 G T KDM2B 5'Flank 0.62 TCGA-AR-A251-01 12 20885955 20885955 C G SLCO1C1 Silent p.V433V 0.16 TCGA-AR-A251-01 12 21693464 21693464 A C GYS2 Silent p.S563S 0.18 TCGA-AR-A251-01 12 48596905 48596905 G T OR10AD1 Missense_Mutation p.N57K 0.66 deleterious(0) benign(0.219) TCGA-AR-A251-01 12 81013196 81013196 T C PTPRQ Missense_Mutation p.I1751T 0.75 tolerated(0.07) benign(0.096) TCGA-AR-A251-01 12 8988187 8988187 G A A2ML1 Missense_Mutation p.E190K 0.28 deleterious(0.02) probably_damaging(0.936) TCGA-AR-A251-01 13 21429763 21429764 - A XPO4 Intron 0.38 TCGA-AR-A251-01 13 23907783 23907783 G A SACS Missense_Mutation p.P3411L 0.10 probably_damaging(0.998) TCGA-AR-A251-01 13 27847472 27847472 G C RASL11A Missense_Mutation p.Q190H 0.16 tolerated(1) possibly_damaging(0.89) TCGA-AR-A251-01 13 72131189 72131189 C A DACH1 Nonsense_Mutation p.G515* 0.12 TCGA-AR-A251-01 13 72131195 72131195 C A DACH1 Missense_Mutation p.D513Y 0.16 probably_damaging(0.944) TCGA-AR-A251-01 13 77671823 77671823 G C MYCBP2 Missense_Mutation p.L3118V 0.11 probably_damaging(0.977) TCGA-AR-A251-01 13 88327927 88327927 G A SLITRK5 Missense_Mutation p.R95H 0.62 deleterious(0) probably_damaging(0.932) TCGA-AR-A251-01 13 96234512 96234512 A G DZIP1 Silent p.D860D 0.56 TCGA-AR-A251-01 14 21968764 21968764 T C METTL3 Missense_Mutation p.M393V 0.32 deleterious(0) possibly_damaging(0.842) TCGA-AR-A251-01 14 45606394 45606394 T A FANCM Missense_Mutation p.L211I 0.30 deleterious(0.01) benign(0.336) TCGA-AR-A251-01 14 64469831 64469831 G T SYNE2 Missense_Mutation p.G1394C 0.79 probably_damaging(1) TCGA-AR-A251-01 14 65253616 65253616 C T SPTB Missense_Mutation p.D1023N 0.83 tolerated(0.42) benign(0.005) TCGA-AR-A251-01 14 77767549 77767549 C A POMT2 Missense_Mutation p.V234F 0.41 tolerated(0.08) possibly_damaging(0.619) TCGA-AR-A251-01 15 62219354 62219354 A C VPS13C Missense_Mutation p.V2151G 0.14 deleterious(0) possibly_damaging(0.797) TCGA-AR-A251-01 15 66190203 66190203 C G MEGF11 3'UTR 0.17 TCGA-AR-A251-01 15 91306223 91306223 G T BLM Missense_Mutation p.R637I 0.32 deleterious(0.01) benign(0.14) TCGA-AR-A251-01 15 91306224 91306224 A G BLM Silent p.R637R 0.33 TCGA-AR-A251-01 16 11935823 11935823 C T RSL1D1 Missense_Mutation p.E224K 0.18 tolerated(0.11) benign(0.098) TCGA-AR-A251-01 16 16150074 16150074 G A ABCC1 Silent p.Q533Q 0.22 TCGA-AR-A251-01 16 18828730 18828730 G A SMG1 Silent p.A3319A 0.35 TCGA-AR-A251-01 16 21716582 21716582 A T OTOA Missense_Mutation p.H358L 0.24 deleterious(0.03) benign(0.287) TCGA-AR-A251-01 16 22128179 22128179 G T VWA3A Missense_Mutation p.Q305H 0.34 tolerated(0.6) benign(0.009) TCGA-AR-A251-01 16 2354098 2354098 A G ABCA3 Missense_Mutation p.F447L 0.80 tolerated(0.26) benign(0.107) TCGA-AR-A251-01 16 24578494 24578499 AAGATC - RBBP6 In_Frame_Del p.R541_S542del 0.70 TCGA-AR-A251-01 16 31120644 31120644 G T BCKDK Missense_Mutation p.A34S 0.54 tolerated_low_confidence(0.59) benign(0.039) TCGA-AR-A251-01 16 49671283 49671283 C A ZNF423 Missense_Mutation p.A594S 0.57 tolerated(0.22) probably_damaging(0.952) TCGA-AR-A251-01 16 67575419 67575419 G T FAM65A Missense_Mutation p.Q316H 0.59 deleterious(0) probably_damaging(0.998) TCGA-AR-A251-01 17 15619893 15619893 T G ZNF286A Missense_Mutation p.N285K 0.78 deleterious(0.05) probably_damaging(0.998) TCGA-AR-A251-01 17 15978996 15978996 C G NCOR1 Missense_Mutation p.Q1174H 0.82 probably_damaging(0.993) TCGA-AR-A251-01 17 26905075 26905075 C G SPAG5 Missense_Mutation p.D1155H 0.22 deleterious(0.03) probably_damaging(0.971) TCGA-AR-A251-01 17 30981576 30981576 C T MYO1D Silent p.K803K 0.59 TCGA-AR-A251-01 17 33331535 33331535 C T LIG3 3'UTR 0.36 TCGA-AR-A251-01 17 3336864 3336864 G C OR1E2 Missense_Mutation p.S91C 0.05 deleterious(0) possibly_damaging(0.832) TCGA-AR-A251-01 17 39994168 39994168 C T KLHL10 5'UTR 0.81 TCGA-AR-A251-01 17 42483296 42483296 C A GPATCH8 Missense_Mutation p.A206S 0.75 tolerated(1) benign(0.168) TCGA-AR-A251-01 17 42987350 42987350 T G GFAP 3'Flank 0.31 TCGA-AR-A251-01 17 45916933 45916933 C T SCRN2 Missense_Mutation p.G145R 0.73 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 17 6526947 6526947 T C KIAA0753 Intron 0.08 TCGA-AR-A251-01 17 68128271 68128271 G T KCNJ16 Missense_Mutation p.A15S 0.76 tolerated_low_confidence(0.56) benign(0.001) TCGA-AR-A251-01 17 74036486 74036515 TGGCCCAGACTTACCTTATTGTCCTTGACT - SRP68 Splice_Site p.X547_splice 0.36 TCGA-AR-A251-01 17 74340819 74340828 CTGAAAAATA TTATTTTTCAGAAACTCTTGTTTCTGAAAAAT PRPSAP1 Splice_Site p.X75_splice 0.15 TCGA-AR-A251-01 17 74474958 74474958 G T RHBDF2 Missense_Mutation p.S230Y 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-AR-A251-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.78 deleterious(0) probably_damaging(0.985) TCGA-AR-A251-01 17 80130643 80130643 C T CCDC57 Missense_Mutation p.A534T 0.09 tolerated(0.1) benign(0.069) TCGA-AR-A251-01 18 29480942 29480942 G C TRAPPC8 Missense_Mutation p.P479R 0.32 deleterious(0.04) probably_damaging(0.987) TCGA-AR-A251-01 18 347309 347309 T G COLEC12 Missense_Mutation p.N105H 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-AR-A251-01 19 10260544 10260544 G A DNMT1 Missense_Mutation p.P789L 0.64 deleterious(0.03) possibly_damaging(0.757) TCGA-AR-A251-01 19 2127191 2127191 G C AP3D1 Silent p.A272A 0.13 TCGA-AR-A251-01 19 30303582 30303582 A T CCNE1 Intron 0.29 TCGA-AR-A251-01 19 38782684 38782684 G C SPINT2 3'UTR 0.06 TCGA-AR-A251-01 19 40521167 40521167 C G ZNF546 Missense_Mutation p.P664A 0.07 deleterious(0.01) possibly_damaging(0.774) TCGA-AR-A251-01 19 40957355 40957355 C A BLVRB Missense_Mutation p.A127S 0.11 tolerated(0.37) benign(0.022) TCGA-AR-A251-01 19 41117183 41117183 G C LTBP4 Missense_Mutation p.E713Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-AR-A251-01 19 41117232 41117232 C G LTBP4 Missense_Mutation p.T729R 0.12 deleterious(0) probably_damaging(0.995) TCGA-AR-A251-01 19 47823226 47823226 C G C5AR1 Missense_Mutation p.F64L 0.47 tolerated(0.4) benign(0.003) TCGA-AR-A251-01 19 49573516 49573516 A C KCNA7 Missense_Mutation p.V392G 0.43 deleterious(0) probably_damaging(0.999) TCGA-AR-A251-01 19 58145216 58145216 A G ZNF211 Intron 0.36 TCGA-AR-A251-01 19 7152746 7152746 A - INSR Frame_Shift_Del p.F741Sfs*30 0.29 TCGA-AR-A251-01 1 109804509 109804509 C G CELSR2 Nonsense_Mutation p.Y1459* 0.39 TCGA-AR-A251-01 1 118574321 118574321 C A SPAG17 Missense_Mutation p.E1201D 0.65 tolerated(0.06) benign(0.325) TCGA-AR-A251-01 1 12446242 12446242 A G VPS13D Splice_Site p.X3829_splice 0.16 TCGA-AR-A251-01 1 145439846 145439846 G A TXNIP Missense_Mutation p.R131H 0.33 deleterious(0) probably_damaging(0.986) TCGA-AR-A251-01 1 149905591 149905591 G A MTMR11 Missense_Mutation p.R258C 0.47 deleterious(0) probably_damaging(0.999) TCGA-AR-A251-01 1 158619688 158619688 C T SPTA1 Missense_Mutation p.R1176Q 0.28 tolerated(0.6) benign(0.019) TCGA-AR-A251-01 1 167815281 167815281 A C ADCY10 Missense_Mutation p.N886K 0.20 tolerated(0.58) benign(0.009) TCGA-AR-A251-01 1 17736479 17736479 G C RCC2 Missense_Mutation p.F485L 0.29 tolerated(0.18) benign(0.024) TCGA-AR-A251-01 1 178310668 178310670 TGT - RASAL2 Intron 0.53 TCGA-AR-A251-01 1 185276629 185276629 T A IVNS1ABP Missense_Mutation p.R175W 0.36 tolerated(0.19) probably_damaging(0.976) TCGA-AR-A251-01 1 207087275 207087275 T G FAIM3 Missense_Mutation p.I68L 0.47 deleterious(0.05) benign(0.026) TCGA-AR-A251-01 1 237958575 237958589 TTTGTATATTTTAGG - RYR2 Splice_Site p.X4638_splice 0.14 TCGA-AR-A251-01 1 247171305 247171305 C G ZNF695 5'UTR 0.26 TCGA-AR-A251-01 1 248309314 248309314 A G OR2M5 Missense_Mutation p.I289V 0.18 deleterious(0.01) benign(0.076) TCGA-AR-A251-01 1 28241134 28241134 T C RPA2 5'UTR 0.36 TCGA-AR-A251-01 1 55319845 55319845 G C DHCR24 Silent p.P361P 0.21 TCGA-AR-A251-01 1 68624831 68624831 A G WLS Missense_Mutation p.L158P 0.16 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 1 86952406 86952406 C T CLCA1 Silent p.S384S 0.19 TCGA-AR-A251-01 1 89732107 89732107 C - GBP5 Frame_Shift_Del p.V264* 0.52 TCGA-AR-A251-01 20 1918063 1918063 G C SIRPA Missense_Mutation p.S455T 0.30 tolerated(0.2) possibly_damaging(0.827) TCGA-AR-A251-01 20 23731390 23731390 G T CST1 Missense_Mutation p.D38E 0.31 tolerated(0.08) possibly_damaging(0.882) TCGA-AR-A251-01 20 30064584 30064584 G A REM1 Silent p.L112L 0.25 TCGA-AR-A251-01 20 55093254 55093254 A G RTFDC1 Missense_Mutation p.H285R 0.56 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 20 56099035 56099035 T A CTCFL Missense_Mutation p.E76V 0.33 deleterious(0) possibly_damaging(0.649) TCGA-AR-A251-01 20 60699699 60699699 C T LSM14B Missense_Mutation p.P52S 0.17 deleterious(0.01) probably_damaging(1) TCGA-AR-A251-01 21 27284272 27284272 C G APP Missense_Mutation p.E564Q 0.30 deleterious(0.01) possibly_damaging(0.546) TCGA-AR-A251-01 21 43279763 43279763 G A PRDM15 Silent p.S323S 0.26 TCGA-AR-A251-01 21 43524190 43524190 C G UMODL1 Silent p.R504R 0.50 TCGA-AR-A251-01 21 46047942 46047942 C G KRTAP10-9 Missense_Mutation p.S285C 0.44 tolerated(0.2) possibly_damaging(0.902) TCGA-AR-A251-01 21 47974547 47974547 G A DIP2A Missense_Mutation p.V1072M 0.62 tolerated(0.1) probably_damaging(0.993) TCGA-AR-A251-01 22 16287713 16287713 C G POTEH Missense_Mutation p.R58T 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-AR-A251-01 22 31658194 31658194 G T LIMK2 Missense_Mutation p.G188V 0.30 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 22 39387505 39387505 C T APOBEC3B Nonsense_Mutation p.Q298* 0.07 TCGA-AR-A251-01 22 42388724 42388724 C G SEPT3 Silent p.G274G 0.21 TCGA-AR-A251-01 2 10130840 10130840 T C GRHL1 Missense_Mutation p.I429T 0.72 deleterious(0.04) probably_damaging(0.999) TCGA-AR-A251-01 2 170606343 170606343 C A KLHL23 3'UTR 0.21 TCGA-AR-A251-01 2 214160797 214160797 T C SPAG16 Missense_Mutation p.I49T 0.31 deleterious(0.01) benign(0.282) TCGA-AR-A251-01 2 219029617 219029617 G C CXCR1 Silent p.G106G 0.18 TCGA-AR-A251-01 2 228217280 228217280 A G MFF Missense_Mutation p.D268G 0.16 deleterious(0) possibly_damaging(0.796) TCGA-AR-A251-01 2 230924032 230924032 C T SLC16A14 Missense_Mutation p.E13K 0.72 deleterious_low_confidence(0.03) benign(0.11) TCGA-AR-A251-01 2 241810813 241810813 G A AGXT Silent p.E157E 0.38 TCGA-AR-A251-01 2 40655750 40655750 C A SLC8A1 Missense_Mutation p.E557D 0.26 tolerated(0.2) benign(0.011) TCGA-AR-A251-01 2 42671481 42671481 G A KCNG3 Missense_Mutation p.L302F 0.16 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 2 44569611 44569611 C G PREPL Missense_Mutation p.A233P 0.20 tolerated(0.14) possibly_damaging(0.884) TCGA-AR-A251-01 2 44934554 44934554 A T CAMKMT Missense_Mutation p.D170V 0.04 deleterious(0) benign(0.239) TCGA-AR-A251-01 2 84518325 84518325 T G FUNDC2P2 RNA 0.12 TCGA-AR-A251-01 2 97405748 97405748 C G LMAN2L Silent p.S10S 0.19 TCGA-AR-A251-01 3 105464837 105464837 G A CBLB Missense_Mutation p.H257Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-AR-A251-01 3 108541750 108541750 A T TRAT1 5'UTR 0.21 TCGA-AR-A251-01 3 119533827 119533827 G A NR1I2 Missense_Mutation p.D305N 0.53 tolerated(0.09) possibly_damaging(0.779) TCGA-AR-A251-01 3 125854388 125854388 G C ALDH1L1 Missense_Mutation p.L498V 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-AR-A251-01 3 147113785 147113785 T G ZIC4 Missense_Mutation p.Q231P 0.12 tolerated(0.06) benign(0.101) TCGA-AR-A251-01 3 151166527 151166527 A T IGSF10 Silent p.I414I 0.13 TCGA-AR-A251-01 3 167217997 167217999 CTA TT WDR49 Frame_Shift_Del p.F639Lfs*22 0.14 TCGA-AR-A251-01 3 27493965 27493965 C T SLC4A7 Missense_Mutation p.D20N 0.36 deleterious(0) probably_damaging(0.999) TCGA-AR-A251-01 3 58508254 58508254 T C ACOX2 Missense_Mutation p.Q534R 0.40 tolerated(0.53) benign(0.013) TCGA-AR-A251-01 3 8923038 8923038 A T RAD18 3'UTR 0.16 TCGA-AR-A251-01 3 93755594 93755594 G C ARL13B Missense_Mutation p.E229Q 0.26 deleterious(0.03) benign(0.153) TCGA-AR-A251-01 4 104102606 104102606 C A CENPE Missense_Mutation p.S324I 0.11 probably_damaging(1) TCGA-AR-A251-01 4 119204213 119204213 A G PRSS12 Missense_Mutation p.L698P 0.21 tolerated(0.06) possibly_damaging(0.857) TCGA-AR-A251-01 4 155157392 155157392 C T DCHS2 Silent p.L2349L 0.23 TCGA-AR-A251-01 4 155533009 155533009 C G FGG Missense_Mutation p.E117Q 0.24 tolerated(0.1) possibly_damaging(0.657) TCGA-AR-A251-01 4 70599960 70599960 G A SULT1B1 Missense_Mutation p.A133V 0.50 deleterious(0.05) probably_damaging(0.974) TCGA-AR-A251-01 4 96140161 96140161 C A UNC5C Missense_Mutation p.S535I 0.13 deleterious(0.03) benign(0.13) TCGA-AR-A251-01 5 10394874 10394874 C G MARCH6 Missense_Mutation p.L280V 0.24 deleterious(0) probably_damaging(0.991) TCGA-AR-A251-01 5 128977608 128977608 C T ADAMTS19 Silent p.T603T 0.49 TCGA-AR-A251-01 5 134032874 134032874 G T SEC24A Missense_Mutation p.G682V 0.68 deleterious(0) possibly_damaging(0.886) TCGA-AR-A251-01 5 140590930 140590930 G T PCDHB12 3'UTR 0.47 TCGA-AR-A251-01 5 141051164 141051164 C A ARAP3 Missense_Mutation p.Q609H 0.40 tolerated(0.18) benign(0.002) TCGA-AR-A251-01 5 14498736 14498736 C A TRIO Missense_Mutation p.S2773R 0.20 unknown(0) TCGA-AR-A251-01 5 153149761 153149761 A G GRIA1 Missense_Mutation p.T696A 0.33 tolerated(0.55) possibly_damaging(0.588) TCGA-AR-A251-01 5 156536088 156536088 C T HAVCR2 5'UTR 0.56 TCGA-AR-A251-01 5 43297126 43297126 C A HMGCS1 Missense_Mutation p.K239N 0.31 deleterious(0.02) probably_damaging(0.936) TCGA-AR-A251-01 5 55264182 55264182 T G IL6ST Missense_Mutation p.E138A 0.54 tolerated(0.06) benign(0.416) TCGA-AR-A251-01 5 6600147 6600147 C G NSUN2 Silent p.V732V 0.26 TCGA-AR-A251-01 5 82807965 82807965 G A VCAN Silent p.E264E 0.67 TCGA-AR-A251-01 5 93294552 93294552 G A FAM172A Missense_Mutation p.A166V 0.47 deleterious(0.01) probably_damaging(0.99) TCGA-AR-A251-01 6 117073619 117073619 T G FAM162B 3'UTR 0.47 TCGA-AR-A251-01 6 130381217 130381217 G T L3MBTL3 Missense_Mutation p.V266F 0.19 deleterious(0.02) possibly_damaging(0.559) TCGA-AR-A251-01 6 136512854 136512854 A T PDE7B Missense_Mutation p.K410M 0.31 deleterious(0.01) probably_damaging(0.91) TCGA-AR-A251-01 6 145157037 145157037 C G UTRN Missense_Mutation p.L3263V 0.20 deleterious(0) probably_damaging(0.997) TCGA-AR-A251-01 6 26252226 26252226 T G HIST1H2BH Silent p.T116T 0.21 TCGA-AR-A251-01 6 38854684 38854684 G T DNAH8 Nonsense_Mutation p.G2576* 0.20 TCGA-AR-A251-01 6 48036082 48036082 C G PTCHD4 Missense_Mutation p.D104H 0.50 tolerated(0.06) probably_damaging(0.996) TCGA-AR-A251-01 6 70646698 70646698 G C COL19A1 Missense_Mutation p.G257R 0.43 tolerated(0.56) unknown(0) TCGA-AR-A251-01 6 74073327 74073327 C A KHDC3L Missense_Mutation p.T133N 0.33 tolerated(0.07) benign(0.046) TCGA-AR-A251-01 6 74125920 74125920 C T DDX43 Missense_Mutation p.P640S 0.46 tolerated(0.27) benign(0.016) TCGA-AR-A251-01 7 100007160 100007160 A C ZCWPW1 Missense_Mutation p.C253W 0.14 deleterious(0.03) possibly_damaging(0.832) TCGA-AR-A251-01 7 100675533 100675533 G C MUC17 Missense_Mutation p.R279T 0.27 benign(0.004) TCGA-AR-A251-01 7 143454170 143454170 G C CTAGE6 Missense_Mutation p.I194M 0.25 deleterious(0) possibly_damaging(0.605) TCGA-AR-A251-01 7 151664434 151664434 T A GALNTL5 Missense_Mutation p.W35R 0.29 tolerated(0.35) benign(0) TCGA-AR-A251-01 7 18767317 18767317 C T HDAC9 Missense_Mutation p.P616S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-AR-A251-01 7 73118577 73118577 G C STX1A Missense_Mutation p.L123V 0.25 deleterious(0) possibly_damaging(0.671) TCGA-AR-A251-01 7 87104731 87104743 CGCGCTCGTGGGG - ABCB4 Frame_Shift_Del p.P14Rfs*20 0.16 TCGA-AR-A251-01 7 92905658 92905658 A T CCDC132 Intron 0.22 TCGA-AR-A251-01 7 99277577 99277577 G C CYP3A5 5'UTR 0.12 TCGA-AR-A251-01 8 104928686 104928704 ACATTTGAGGAAGTGTACA - RIMS2 Frame_Shift_Del p.F654Sfs*3 0.25 TCGA-AR-A251-01 8 125326192 125326192 C G TMEM65 3'UTR 0.13 TCGA-AR-A251-01 8 2054293 2054293 C G MYOM2 Nonsense_Mutation p.Y968* 0.23 TCGA-AR-A251-01 8 25240200 25240200 C G DOCK5 Missense_Mutation p.A1346G 0.29 deleterious(0) possibly_damaging(0.672) TCGA-AR-A251-01 8 38258389 38258389 C - LETM2 Frame_Shift_Del p.S222Afs*5 0.19 TCGA-AR-A251-01 8 41790483 41790483 C A KAT6A Missense_Mutation p.S1752I 0.20 unknown(0) TCGA-AR-A251-01 8 67789756 67789756 A G MCMDC2 Missense_Mutation p.D153G 0.10 tolerated(0.14) benign(0.388) TCGA-AR-A251-01 8 87680252 87680252 T G CNGB3 Missense_Mutation p.Y213S 0.24 deleterious(0.04) benign(0.065) TCGA-AR-A251-01 8 95470589 95470589 C G RAD54B Missense_Mutation p.E71Q 0.14 tolerated_low_confidence(0.33) benign(0.07) TCGA-AR-A251-01 9 109688792 109688792 C G ZNF462 Missense_Mutation p.P867A 0.42 probably_damaging(0.997) TCGA-AR-A251-01 9 130648843 130648843 C G ST6GALNAC6 3'UTR 0.42 TCGA-AR-A251-01 9 14792819 14792819 G T FREM1 Silent p.A1301A 0.40 TCGA-AR-A251-01 9 3346722 3346722 G A RFX3 Missense_Mutation p.P54S 0.16 tolerated(0.35) benign(0.17) TCGA-AR-A251-01 9 35713254 35713254 G C TLN1 Silent p.A1097A 0.41 TCGA-AR-A251-01 9 742357 742357 C T KANK1 Silent p.V1283V 0.20 TCGA-AR-A251-01 X 109694662 109694662 A G RGAG1 Missense_Mutation p.M273V 0.33 deleterious(0.01) benign(0.441) TCGA-AR-A251-01 X 26212565 26212565 C T MAGEB6 Missense_Mutation p.T201M 0.37 tolerated(1) benign(0.002) TCGA-AR-A251-01 X 53284112 53284112 A T IQSEC2 Missense_Mutation p.V334E 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A251-01 X 53423213 53423213 G A SMC1A Silent p.A932A 0.21 TCGA-AR-A251-01 X 53423214 53423214 G T SMC1A Missense_Mutation p.A932D 0.20 tolerated(1) benign(0.036) TCGA-AR-A251-01 X 55287030 55287030 C G PAGE3 Missense_Mutation p.D86H 0.17 deleterious(0) probably_damaging(0.988) TCGA-AR-A251-01 X 55651264 55651264 G T FOXR2 3'UTR 0.20 TCGA-AR-A252-01 12 6730293 6730293 G A LPAR5 Missense_Mutation p.A41V 0.12 tolerated(0.87) benign(0.062) TCGA-AR-A252-01 13 99378425 99378425 G A SLC15A1 Missense_Mutation p.T66M 0.07 tolerated(0.06) benign(0.189) TCGA-AR-A252-01 16 57413659 57413659 G A CX3CL1 Missense_Mutation p.A62T 0.10 deleterious(0.05) probably_damaging(1) TCGA-AR-A252-01 16 89758243 89758243 A G CDK10 Missense_Mutation p.Q122R 0.13 deleterious(0) probably_damaging(0.955) TCGA-AR-A252-01 17 10428881 10428881 G A MYH2 Missense_Mutation p.A1475V 0.15 tolerated(0.06) benign(0.028) TCGA-AR-A252-01 19 13915850 13915850 G A ZSWIM4 Silent p.L200L 0.14 TCGA-AR-A252-01 19 5787344 5787344 G A DUS3L Missense_Mutation p.S414F 0.09 tolerated(0.08) benign(0.012) TCGA-AR-A252-01 19 5787618 5787618 G C DUS3L Missense_Mutation p.I398M 0.09 deleterious(0) probably_damaging(1) TCGA-AR-A252-01 1 162731140 162731140 G A DDR2 Missense_Mutation p.R332Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-AR-A252-01 1 247202172 247202172 C T ZNF670 Missense_Mutation p.G44E 0.06 tolerated(0.06) possibly_damaging(0.811) TCGA-AR-A252-01 3 69072340 69072340 T C TMF1 Silent p.Q1090Q 0.11 TCGA-AR-A252-01 6 121452788 121452788 T C TBC1D32 Missense_Mutation p.I962V 0.04 tolerated(0.85) benign(0.001) TCGA-AR-A252-01 6 155109037 155109037 T C SCAF8 Missense_Mutation p.S68P 0.05 deleterious(0) unknown(0) TCGA-AR-A252-01 7 4272965 4272965 G A SDK1 Missense_Mutation p.R1969Q 0.18 tolerated(0.09) benign(0.041) TCGA-AR-A252-01 7 99129364 99129364 T C ZKSCAN5 Missense_Mutation p.F671S 0.08 tolerated(0.58) possibly_damaging(0.649) TCGA-AR-A252-01 8 145608327 145608327 G A ADCK5 Silent p.A54A 0.07 TCGA-AR-A252-01 8 22865401 22865401 C T RHOBTB2 Intron 0.20 TCGA-AR-A252-01 9 100117259 100117259 T G CCDC180 Missense_Mutation p.L1122R 0.06 deleterious(0) possibly_damaging(0.883) TCGA-AR-A252-01 X 142718115 142718115 A G SLITRK4 Silent p.F270F 0.12 TCGA-AR-A254-01 10 15255282 15255282 C T FAM171A1 Missense_Mutation p.V769I 0.47 tolerated(0.23) benign(0.05) TCGA-AR-A254-01 10 73111334 73111334 C A SLC29A3 Silent p.I133I 0.39 TCGA-AR-A254-01 10 73115895 73115895 C A SLC29A3 Missense_Mutation p.S223Y 0.34 deleterious(0.01) probably_damaging(0.93) TCGA-AR-A254-01 10 73122365 73122365 G C SLC29A3 Nonstop_Mutation p.*476Yext*30 0.29 TCGA-AR-A254-01 10 73122407 73122407 G T SLC29A3 3'UTR 0.40 TCGA-AR-A254-01 11 5631431 5631431 T A TRIM6 Missense_Mutation p.M305K 0.17 tolerated(0.11) benign(0.018) TCGA-AR-A254-01 12 56638218 56638218 T A ANKRD52 Missense_Mutation p.E908D 0.17 tolerated(0.17) possibly_damaging(0.57) TCGA-AR-A254-01 15 50557883 50557883 G A HDC 5'UTR 0.14 TCGA-AR-A254-01 16 19089455 19089455 C T COQ7 Missense_Mutation p.A210V 0.12 deleterious(0) probably_damaging(0.987) TCGA-AR-A254-01 16 22161156 22161156 G T VWA3A Silent p.T1011T 0.39 TCGA-AR-A254-01 17 35822222 35822222 C T TADA2A Nonsense_Mutation p.Q237* 0.26 TCGA-AR-A254-01 17 38450220 38450220 G A CDC6 Silent p.E285E 0.12 TCGA-AR-A254-01 17 7579315 7579315 G T TP53 Nonsense_Mutation p.C124* 0.45 TCGA-AR-A254-01 18 2694558 2694558 G A SMCHD1 Missense_Mutation p.E303K 0.18 deleterious(0) probably_damaging(0.993) TCGA-AR-A254-01 18 44559997 44559997 C T TCEB3B Missense_Mutation p.V547M 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-AR-A254-01 19 15565071 15565071 C T RASAL3 Missense_Mutation p.R723Q 0.15 tolerated(0.4) benign(0.025) TCGA-AR-A254-01 19 45997940 45997940 G A RTN2 Missense_Mutation p.R135C 0.19 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-AR-A254-01 19 48737790 48737790 C T CARD8 Missense_Mutation p.E74K 0.13 deleterious_low_confidence(0.01) benign(0.292) TCGA-AR-A254-01 19 50764750 50764750 G T MYH14 Missense_Mutation p.D815Y 0.50 deleterious(0) probably_damaging(0.968) TCGA-AR-A254-01 19 51129221 51129221 G A SYT3 Silent p.A445A 0.13 TCGA-AR-A254-01 1 151015501 151015501 G A BNIPL Nonsense_Mutation p.W168* 0.08 TCGA-AR-A254-01 1 152285881 152285881 C T FLG Missense_Mutation p.G494E 0.04 possibly_damaging(0.782) TCGA-AR-A254-01 1 175323569 175323569 C T TNR Missense_Mutation p.D1114N 0.11 tolerated(0.51) benign(0.002) TCGA-AR-A254-01 21 36206874 36206874 T - RUNX1 Frame_Shift_Del p.Q213Rfs*24 0.29 TCGA-AR-A254-01 21 45924690 45924690 G C TSPEAR Missense_Mutation p.T610S 0.12 tolerated(0.73) benign(0.005) TCGA-AR-A254-01 2 37873401 37873401 C T CDC42EP3 Silent p.P110P 0.20 TCGA-AR-A254-01 3 15045405 15045405 G A NR2C2 5'UTR 0.30 TCGA-AR-A254-01 3 155241748 155241748 C T PLCH1 Missense_Mutation p.E458K 0.18 deleterious(0) possibly_damaging(0.834) TCGA-AR-A254-01 3 185643364 185643364 C T TRA2B Missense_Mutation p.R74H 0.23 tolerated_low_confidence(0.27) unknown(0) TCGA-AR-A254-01 5 13901632 13901632 T A DNAH5 Missense_Mutation p.E594V 0.36 possibly_damaging(0.728) TCGA-AR-A254-01 5 140626710 140626710 G A PCDHB15 Missense_Mutation p.E522K 0.19 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AR-A254-01 5 150029320 150029320 G A SYNPO Missense_Mutation p.V739I 0.27 tolerated(0.16) probably_damaging(0.935) TCGA-AR-A254-01 6 152647219 152647219 G A SYNE1 Silent p.H5104H 0.24 TCGA-AR-A254-01 6 159621606 159621606 C T FNDC1 Silent p.T151T 0.21 TCGA-AR-A254-01 7 117431492 117431492 C T CTTNBP2 Silent p.S586S 0.18 TCGA-AR-A254-01 7 147600694 147600694 C T CNTNAP2 Silent p.N712N 0.26 TCGA-AR-A254-01 7 87856247 87856247 T C SRI 5'UTR 0.15 TCGA-AR-A254-01 7 96635680 96635680 T A DLX6 Missense_Mutation p.Y131N 0.27 tolerated(0.08) benign(0.055) TCGA-AR-A254-01 8 95500985 95500985 A C KIAA1429 Missense_Mutation p.F1796L 0.17 deleterious(0.03) benign(0.294) TCGA-AR-A254-01 9 119460572 119460572 T A TRIM32 Missense_Mutation p.V184D 0.23 deleterious(0) possibly_damaging(0.832) TCGA-AR-A254-01 9 131374449 131374449 G A SPTAN1 Missense_Mutation p.S1656N 0.46 tolerated(0.2) benign(0.003) TCGA-AR-A254-01 9 131374450 131374450 C G SPTAN1 Missense_Mutation p.S1656R 0.45 tolerated(0.11) benign(0.027) TCGA-AR-A254-01 9 139390870 139390870 C T NOTCH1 Missense_Mutation p.A2441T 0.13 tolerated(0.48) benign(0.005) TCGA-AR-A255-01 10 105948072 105948072 C A WDR96 Missense_Mutation p.R548I 0.26 tolerated(0.06) benign(0.271) TCGA-AR-A255-01 10 6067978 6067978 G A IL2RA Silent p.D25D 0.09 TCGA-AR-A255-01 10 95993811 95993811 G C PLCE1 Missense_Mutation p.R652S 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-AR-A255-01 11 100933223 100933223 C T PGR Missense_Mutation p.E723K 0.20 deleterious(0) probably_damaging(0.995) TCGA-AR-A255-01 11 108196269 108196269 C T ATM Nonsense_Mutation p.Q2269* 0.38 TCGA-AR-A255-01 11 113669847 113669847 A G USP28 3'UTR 0.20 TCGA-AR-A255-01 11 2186567 2186567 C G TH Missense_Mutation p.R441P 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-AR-A255-01 11 46564000 46564000 C A AMBRA1 Nonsense_Mutation p.E433* 0.11 TCGA-AR-A255-01 11 67789288 67789288 C A ALDH3B1 Silent p.G298G 0.24 TCGA-AR-A255-01 12 108954950 108954950 T C SART3 5'UTR 0.18 TCGA-AR-A255-01 12 122413496 122413496 G C WDR66 Missense_Mutation p.D971H 0.19 deleterious(0.02) benign(0.134) TCGA-AR-A255-01 12 132241104 132241104 A C SFSWAP Silent p.A545A 0.33 TCGA-AR-A255-01 12 47163175 47163175 G A SLC38A4 Nonsense_Mutation p.R446* 0.18 TCGA-AR-A255-01 13 78472291 78472291 C T EDNRB 3'UTR 0.24 TCGA-AR-A255-01 14 20216051 20216051 C A OR4Q3 Silent p.I155I 0.53 TCGA-AR-A255-01 14 23013021 23013021 C A TRAJ2 Missense_Mutation p.T3N 0.07 unknown(0) TCGA-AR-A255-01 14 81658982 81658982 G T GTF2A1 Missense_Mutation p.Q272K 0.26 deleterious(0) possibly_damaging(0.893) TCGA-AR-A255-01 14 91779543 91779543 C T CCDC88C Missense_Mutation p.D873N 0.18 tolerated(0.34) possibly_damaging(0.754) TCGA-AR-A255-01 15 22369450 22369450 G C OR4M2 Missense_Mutation p.R292T 0.07 deleterious(0) possibly_damaging(0.905) TCGA-AR-A255-01 15 41687079 41687079 C T NDUFAF1 Missense_Mutation p.G246E 0.21 deleterious(0) probably_damaging(0.994) TCGA-AR-A255-01 16 3072767 3072767 C G HCFC1R1 3'UTR 0.25 TCGA-AR-A255-01 16 3349850 3349850 A T TIGD7 Silent p.V255V 0.11 TCGA-AR-A255-01 16 81193423 81193423 C A PKD1L2 Splice_Site 0.21 TCGA-AR-A255-01 17 27901795 27901795 C T GIT1 Silent p.V746V 0.06 TCGA-AR-A255-01 17 45419291 45419291 G C EFCAB13 Missense_Mutation p.E66Q 0.06 deleterious(0.01) possibly_damaging(0.512) TCGA-AR-A255-01 17 48750941 48750941 C A ABCC3 Missense_Mutation p.R841S 0.18 tolerated(0.17) benign(0.002) TCGA-AR-A255-01 17 60064387 60064387 G C MED13 Missense_Mutation p.S789C 0.12 deleterious(0) probably_damaging(0.998) TCGA-AR-A255-01 17 71394291 71394291 G A SDK2 Silent p.T1079T 0.15 TCGA-AR-A255-01 18 13056429 13056429 C G CEP192 Missense_Mutation p.C1280W 0.28 tolerated(0.06) probably_damaging(0.983) TCGA-AR-A255-01 19 14574672 14574672 A G PKN1 Missense_Mutation p.I516V 0.29 tolerated(0.15) benign(0.044) TCGA-AR-A255-01 19 40521493 40521493 G A ZNF546 Silent p.T772T 0.34 TCGA-AR-A255-01 19 54255733 54255733 G C MIR519A1 RNA 0.12 TCGA-AR-A255-01 19 54621959 54621959 G A PRPF31 Missense_Mutation p.E62K 0.06 tolerated(0.32) benign(0.005) TCGA-AR-A255-01 19 55420747 55420747 G A NCR1 Missense_Mutation p.G167R 0.29 tolerated(1) benign(0.02) TCGA-AR-A255-01 1 114944055 114944055 A G TRIM33 Missense_Mutation p.C975R 0.23 deleterious(0) probably_damaging(0.999) TCGA-AR-A255-01 1 144917518 144917518 G A PDE4DIP Missense_Mutation p.S529F 0.12 deleterious(0) possibly_damaging(0.776) TCGA-AR-A255-01 1 171530240 171530240 G C PRRC2C Missense_Mutation p.E2037Q 0.07 probably_damaging(0.993) TCGA-AR-A255-01 1 179019422 179019422 G A FAM20B Missense_Mutation p.R129Q 0.11 deleterious(0.01) possibly_damaging(0.873) TCGA-AR-A255-01 1 181767626 181767626 C A CACNA1E Missense_Mutation p.L2200M 0.20 deleterious(0.04) benign(0.133) TCGA-AR-A255-01 1 186050516 186050516 G A HMCN1 Missense_Mutation p.R2926Q 0.35 probably_damaging(0.993) TCGA-AR-A255-01 1 209956083 209956083 G T C1orf74 3'UTR 0.16 TCGA-AR-A255-01 1 240656696 240656696 G A GREM2 Missense_Mutation p.A27V 0.27 tolerated(0.23) benign(0.003) TCGA-AR-A255-01 1 247051773 247051773 G A AHCTF1 Nonsense_Mutation p.Q740* 0.06 TCGA-AR-A255-01 1 44436697 44436697 G A DPH2 Missense_Mutation p.G107D 0.37 deleterious(0) probably_damaging(1) TCGA-AR-A255-01 1 52704805 52704805 C G ZFYVE9 Missense_Mutation p.I572M 0.09 deleterious(0.01) benign(0.238) TCGA-AR-A255-01 20 20553660 20553660 G A RALGAPA2 Silent p.L920L 0.11 TCGA-AR-A255-01 20 40116366 40116366 G C CHD6 Nonsense_Mutation p.S647* 0.07 TCGA-AR-A255-01 20 43113021 43113021 G A TTPAL Missense_Mutation p.A164T 0.15 tolerated(0.07) possibly_damaging(0.868) TCGA-AR-A255-01 20 44512325 44512325 T C ZSWIM1 Missense_Mutation p.I365T 0.11 deleterious(0) possibly_damaging(0.581) TCGA-AR-A255-01 21 34107234 34107234 G A PAXBP1 3'UTR 0.16 TCGA-AR-A255-01 2 113325615 113325615 G A POLR1B Silent p.L606L 0.20 TCGA-AR-A255-01 2 149798136 149798136 G A KIF5C Missense_Mutation p.E137K 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A255-01 2 166201270 166201270 G T SCN2A Missense_Mutation p.W923L 0.22 deleterious(0) possibly_damaging(0.69) TCGA-AR-A255-01 2 187370543 187370543 A G ZC3H15 Missense_Mutation p.Y314C 0.16 tolerated(0.07) benign(0.021) TCGA-AR-A255-01 2 207435499 207435499 G T ADAM23 Silent p.V510V 0.16 TCGA-AR-A255-01 2 220356878 220356878 G A SPEG Silent p.T3169T 0.11 TCGA-AR-A255-01 2 97427918 97427918 C A CNNM4 Missense_Mutation p.F394L 0.13 deleterious(0) possibly_damaging(0.709) TCGA-AR-A255-01 3 122287954 122287954 G A DTX3L Missense_Mutation p.E340K 0.12 tolerated(0.64) benign(0.009) TCGA-AR-A255-01 3 135721399 135721399 G A PPP2R3A Silent p.L353L 0.36 TCGA-AR-A255-01 3 142090130 142090130 C A XRN1 Nonsense_Mutation p.E1007* 0.10 TCGA-AR-A255-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.40 deleterious(0.01) probably_damaging(1) TCGA-AR-A255-01 3 182554386 182554386 C G ATP11B Intron 0.20 TCGA-AR-A255-01 3 197553785 197553785 C T LRCH3 Missense_Mutation p.S226L 0.07 deleterious(0) benign(0.159) TCGA-AR-A255-01 3 52265497 52265497 C A TWF2 Missense_Mutation p.G114V 0.20 deleterious(0) probably_damaging(0.998) TCGA-AR-A255-01 3 57613866 57613868 CTT - DENND6A 3'UTR 0.64 TCGA-AR-A255-01 3 88039993 88039993 G A HTR1F Missense_Mutation p.G32R 0.19 deleterious(0) benign(0.141) TCGA-AR-A255-01 3 93845263 93845263 G C NSUN3 Missense_Mutation p.D318H 0.09 tolerated(0.55) possibly_damaging(0.606) TCGA-AR-A255-01 3 99648853 99648871 GCCTATGACCTCATCTCGA - FILIP1L Frame_Shift_Del p.R86Ffs*2 0.48 TCGA-AR-A255-01 4 106190872 106190872 G C TET2 Missense_Mutation p.D1384H 0.16 deleterious(0) probably_damaging(1) TCGA-AR-A255-01 4 121698355 121698355 G A PRDM5 Missense_Mutation p.R509W 0.13 deleterious(0) probably_damaging(0.998) TCGA-AR-A255-01 4 177116659 177116659 C G SPATA4 Missense_Mutation p.D19H 0.17 tolerated_low_confidence(0.11) benign(0.104) TCGA-AR-A255-01 4 187540311 187540311 G T FAT1 Missense_Mutation p.Q2477K 0.18 benign(0.098) TCGA-AR-A255-01 4 72205101 72205101 G A SLC4A4 Missense_Mutation p.E90K 0.23 tolerated(0.06) benign(0.226) TCGA-AR-A255-01 5 132094494 132094495 AT - SEPT8 Intron 0.09 TCGA-AR-A255-01 5 148756493 148756493 G A IL17B Silent p.A39A 0.31 TCGA-AR-A255-01 6 30954618 30954618 T C MUC21 Silent p.A222A 0.53 TCGA-AR-A255-01 7 157396735 157396735 T A PTPRN2 Missense_Mutation p.N793Y 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-AR-A255-01 7 72286035 72286035 G A TYW1B Missense_Mutation p.A54V 0.15 tolerated(0.08) possibly_damaging(0.827) TCGA-AR-A255-01 7 82544944 82544944 C T PCLO Missense_Mutation p.E4120K 0.14 unknown(0) TCGA-AR-A255-01 8 113988070 113988070 A G CSMD3 Silent p.H446H 0.45 TCGA-AR-A255-01 8 133101771 133101771 A G HHLA1 Missense_Mutation p.I211T 0.20 deleterious(0) probably_damaging(0.991) TCGA-AR-A255-01 8 145736012 145736012 C T MFSD3 Missense_Mutation p.R288C 0.56 tolerated(0.18) possibly_damaging(0.72) TCGA-AR-A255-01 8 37734844 37734844 C T RAB11FIP1 Silent p.S199S 0.06 TCGA-AR-A255-01 8 56698387 56698387 A T TGS1 Missense_Mutation p.E92D 0.07 deleterious(0.01) possibly_damaging(0.64) TCGA-AR-A255-01 9 17416099 17416099 T G CNTLN Missense_Mutation p.V1009G 0.16 deleterious(0) benign(0.394) TCGA-AR-A255-01 9 18888027 18888027 C A ADAMTSL1 Missense_Mutation p.S1483Y 0.20 tolerated(0.12) benign(0.014) TCGA-AR-A255-01 X 108887387 108887387 G C ACSL4 Missense_Mutation p.I669M 0.08 tolerated(0.26) benign(0.003) TCGA-AR-A255-01 X 118221586 118221586 G T KIAA1210 Missense_Mutation p.Q1203K 0.18 tolerated(0.23) probably_damaging(0.991) TCGA-AR-A255-01 X 134994548 134994548 G A SAGE1 Missense_Mutation p.E864K 0.12 tolerated(0.34) benign(0.008) TCGA-AR-A255-01 X 151896252 151896252 C T MAGEA12 3'Flank 0.10 TCGA-AR-A255-01 X 154282911 154282912 - T FUNDC2 Frame_Shift_Ins p.G181Rfs*56 0.31 TCGA-AR-A255-01 X 44037731 44037731 C T EFHC2 Missense_Mutation p.E611K 0.11 tolerated(0.27) benign(0.008) TCGA-AR-A255-01 X 47444500 47444500 G T TIMP1 Intron 0.16 TCGA-AR-A256-01 10 103909715 103909715 G A PPRC1 Missense_Mutation p.V1642I 0.35 deleterious(0.03) benign(0.097) TCGA-AR-A256-01 10 118439100 118439100 C T HSPA12A Silent p.P400P 0.53 TCGA-AR-A256-01 10 25284628 25284628 C T ENKUR Missense_Mutation p.D132N 0.30 tolerated(0.13) benign(0.049) TCGA-AR-A256-01 10 33000568 33000568 G C C10ORF68 Missense_Mutation p.E134Q 0.20 deleterious(0.03) possibly_damaging(0.733) TCGA-AR-A256-01 10 45487443 45487443 A T RASSF4 Missense_Mutation p.T300S 0.26 tolerated(0.15) probably_damaging(0.996) TCGA-AR-A256-01 10 49386172 49386172 G A FRMPD2 Missense_Mutation p.P938L 0.41 tolerated(0.16) benign(0.012) TCGA-AR-A256-01 10 61831529 61831529 G C ANK3 Missense_Mutation p.P3037R 0.40 benign(0.103) TCGA-AR-A256-01 10 70153888 70153888 T A RUFY2 Silent p.G211G 0.25 TCGA-AR-A256-01 10 7618855 7618855 G T ITIH5 Silent p.I513I 0.45 TCGA-AR-A256-01 10 94274755 94274755 C G IDE Missense_Mutation p.D236H 0.47 deleterious(0.01) possibly_damaging(0.894) TCGA-AR-A256-01 11 10792118 10792118 G A CTR9 Missense_Mutation p.D771N 0.58 tolerated(0.15) benign(0.002) TCGA-AR-A256-01 11 108017053 108017053 A C ACAT1 Missense_Mutation p.N377T 0.26 tolerated(0.07) possibly_damaging(0.768) TCGA-AR-A256-01 11 117691278 117691278 C A FXYD2 Intron 0.75 TCGA-AR-A256-01 11 118772711 118772711 G T BCL9L Silent p.R581R 0.12 TCGA-AR-A256-01 11 124120687 124120687 A C OR8G1 Missense_Mutation p.K89Q 0.33 deleterious_low_confidence(0.03) benign(0.115) TCGA-AR-A256-01 11 1464595 1464595 G T BRSK2 Missense_Mutation p.V245L 0.82 deleterious(0) benign(0.128) TCGA-AR-A256-01 11 2337833 2337849 CTGTGGTTTGCCATCCG - TSPAN32 Frame_Shift_Del p.F221Lfs*52 0.58 TCGA-AR-A256-01 11 2683441 2683441 G T KCNQ1 Intron 0.56 TCGA-AR-A256-01 11 3147733 3147733 C A OSBPL5 Silent p.P63P 0.84 TCGA-AR-A256-01 11 46748272 46748282 CGACCTCTGTT - F2 Frame_Shift_Del p.P340Efs*55 0.76 TCGA-AR-A256-01 11 55563515 55563515 C T OR5D14 Missense_Mutation p.L162F 0.24 deleterious(0.04) benign(0.033) TCGA-AR-A256-01 11 60160252 60160252 A T MS4A7 Missense_Mutation p.N214I 0.19 tolerated(0.43) possibly_damaging(0.736) TCGA-AR-A256-01 11 62402465 62402465 C A GANAB Missense_Mutation p.V130F 0.16 tolerated(0.1) benign(0.436) TCGA-AR-A256-01 11 64606639 64606639 C A CDC42BPG Nonsense_Mutation p.E248* 0.57 TCGA-AR-A256-01 11 64893439 64893439 G T MRPL49 3'UTR 0.19 TCGA-AR-A256-01 11 65638053 65638053 C G EFEMP2 Missense_Mutation p.Q148H 0.32 tolerated(0.32) benign(0.004) TCGA-AR-A256-01 11 66620009 66620009 A C PC Missense_Mutation p.S576A 0.32 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 11 7063859 7063859 C G NLRP14 Missense_Mutation p.A201G 0.18 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 11 726965 726965 G - EPS8L2 Frame_Shift_Del p.E713Rfs*114 0.63 TCGA-AR-A256-01 11 76370691 76370691 C G LRRC32 Missense_Mutation p.C649S 0.39 deleterious(0) possibly_damaging(0.776) TCGA-AR-A256-01 12 124383347 124383347 T G DNAH10 Missense_Mutation p.V3091G 0.15 benign(0.002) TCGA-AR-A256-01 12 130898669 130898669 C A RIMBP2 Splice_Site p.X884_splice 0.57 TCGA-AR-A256-01 12 132212907 132212907 A T SFSWAP Missense_Mutation p.T339S 0.11 tolerated(0.48) benign(0.007) TCGA-AR-A256-01 12 133198288 133198288 T G P2RX2 Missense_Mutation p.C408W 0.12 tolerated(0.22) possibly_damaging(0.698) TCGA-AR-A256-01 12 14849446 14849446 G A GUCY2C 5'UTR 0.10 TCGA-AR-A256-01 12 22214246 22214246 G T CMAS Nonsense_Mutation p.E274* 0.32 TCGA-AR-A256-01 12 25311497 25311497 T C CASC1 Missense_Mutation p.E36G 0.10 deleterious(0) unknown(0) TCGA-AR-A256-01 12 26877590 26877590 T A ITPR2 Missense_Mutation p.Q122L 0.61 deleterious(0) benign(0.23) TCGA-AR-A256-01 12 49412498 49412498 C A PRKAG1 Intron 0.30 TCGA-AR-A256-01 12 51685681 51685681 C T BIN2 Silent p.K403K 0.63 TCGA-AR-A256-01 12 53676930 53676930 A G ESPL1 Missense_Mutation p.I937V 0.74 tolerated(0.64) benign(0.003) TCGA-AR-A256-01 12 55725942 55725942 T A OR6C3 Missense_Mutation p.I153N 0.31 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-AR-A256-01 12 7473395 7473395 T G ACSM4 Silent p.L332L 0.82 TCGA-AR-A256-01 12 78591132 78591132 T C NAV3 Missense_Mutation p.S2111P 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A256-01 12 8328517 8328517 C A ZNF705A Missense_Mutation p.D99E 0.26 deleterious(0.02) possibly_damaging(0.84) TCGA-AR-A256-01 13 103506189 103506189 G C BIVM-ERCC5 Missense_Mutation p.R542T 0.08 deleterious(0) probably_damaging(0.943) TCGA-AR-A256-01 13 32340136 32340136 T G RXFP2 Missense_Mutation p.F157V 0.51 deleterious(0) probably_damaging(0.985) TCGA-AR-A256-01 13 50098309 50098309 T G PHF11 Missense_Mutation p.H242Q 0.50 deleterious(0.04) benign(0.358) TCGA-AR-A256-01 14 101350433 101350433 G A RTL1 Silent p.F231F 0.28 TCGA-AR-A256-01 14 64608066 64608066 C G SYNE2 Nonsense_Mutation p.S4995* 0.53 TCGA-AR-A256-01 14 68126640 68126640 C G VTI1B Splice_Site p.X59_splice 0.34 TCGA-AR-A256-01 14 93022208 93022208 C G RIN3 Missense_Mutation p.L53V 0.57 deleterious(0.03) unknown(0) TCGA-AR-A256-01 15 100269499 100269508 AAAGTAGACC - LYSMD4 Frame_Shift_Del p.V239Kfs*12 0.80 TCGA-AR-A256-01 15 101555536 101555536 A G LRRK1 Missense_Mutation p.E513G 0.22 tolerated(0.12) benign(0.02) TCGA-AR-A256-01 15 39884927 39884927 T C THBS1 Silent p.D897D 0.56 TCGA-AR-A256-01 15 40675104 40675104 A T KNSTRN Missense_Mutation p.D23V 0.25 tolerated_low_confidence(0.09) benign(0.036) TCGA-AR-A256-01 15 51233946 51233946 C T AP4E1 Missense_Mutation p.H384Y 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A256-01 15 78566657 78566657 C T DNAJA4 Silent p.I208I 0.71 TCGA-AR-A256-01 15 84568455 84568455 G C ADAMTSL3 Missense_Mutation p.E558Q 0.73 deleterious(0.03) possibly_damaging(0.529) TCGA-AR-A256-01 15 91493734 91493734 A G UNC45A Missense_Mutation p.Y731C 0.81 tolerated(0.07) benign(0.414) TCGA-AR-A256-01 16 15103550 15103550 C T PDXDC1 Silent p.L221L 0.11 TCGA-AR-A256-01 16 18841257 18841257 T - SMG1 Frame_Shift_Del p.T3042Hfs*14 0.14 TCGA-AR-A256-01 16 2331086 2331090 CTCTC - ABCA3 Frame_Shift_Del p.E1433Pfs*16 0.15 TCGA-AR-A256-01 16 28515309 28515309 G T IL27 Missense_Mutation p.P32T 0.47 deleterious_low_confidence(0.05) benign(0.007) TCGA-AR-A256-01 16 30096394 30096394 C G PPP4C 3'UTR 0.36 TCGA-AR-A256-01 16 48245083 48245083 A T ABCC11 Missense_Mutation p.F462I 0.52 tolerated(0.4) benign(0.002) TCGA-AR-A256-01 16 57741527 57741527 C G CCDC135 Missense_Mutation p.I338M 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-AR-A256-01 16 67580080 67580080 C T FAM65A Nonsense_Mutation p.Q1190* 0.22 TCGA-AR-A256-01 17 40993571 40993571 C T PSME3 Silent p.S260S 0.50 TCGA-AR-A256-01 17 48917309 48917309 G A WFIKKN2 Silent p.S220S 0.24 TCGA-AR-A256-01 17 62865212 62865212 C T LRRC37A3 Splice_Site p.X993_splice 0.93 TCGA-AR-A256-01 17 67080498 67080498 T C ABCA6 Splice_Site p.X1421_splice 0.27 TCGA-AR-A256-01 17 72368470 72368470 G T GPR142 Missense_Mutation p.V374F 0.15 deleterious(0.02) possibly_damaging(0.697) TCGA-AR-A256-01 17 7579359 7579360 - GA TP53 Frame_Shift_Ins p.R110Sfs*14 0.61 TCGA-AR-A256-01 17 7592245 7592245 C T WRAP53 Silent p.I93I 0.16 TCGA-AR-A256-01 17 79092185 79092185 C A AATK 3'UTR 0.79 TCGA-AR-A256-01 17 80041432 80041432 C T FASN Missense_Mutation p.E1768K 0.43 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 17 81043153 81043153 C T METRNL Silent p.Y170Y 0.82 TCGA-AR-A256-01 17 8390870 8390870 G A MYH10 Missense_Mutation p.R1643W 0.32 probably_damaging(0.967) TCGA-AR-A256-01 18 54814748 54814748 T A BOD1L2 Missense_Mutation p.Y69N 0.91 deleterious(0) possibly_damaging(0.833) TCGA-AR-A256-01 19 1061826 1061827 TT - ABCA7 Frame_Shift_Del p.F1837Sfs*43 0.22 TCGA-AR-A256-01 19 11339697 11339697 C G DOCK6 Missense_Mutation p.E911D 0.26 deleterious(0) possibly_damaging(0.609) TCGA-AR-A256-01 19 12760800 12760800 G T MAN2B1 Missense_Mutation p.R732S 0.41 deleterious(0) probably_damaging(0.957) TCGA-AR-A256-01 19 13059325 13059325 C G RAD23A Nonsense_Mutation p.S144* 0.47 TCGA-AR-A256-01 19 16964996 16964996 C G SIN3B Missense_Mutation p.L328V 0.41 deleterious(0.04) probably_damaging(0.967) TCGA-AR-A256-01 19 18286477 18286477 G C IFI30 Missense_Mutation p.E151D 0.41 tolerated(0.15) probably_damaging(0.913) TCGA-AR-A256-01 19 35758116 35758116 C G LSR Missense_Mutation p.P465A 0.50 tolerated(0.28) probably_damaging(0.997) TCGA-AR-A256-01 19 42221424 42221424 G A CEACAM5 Missense_Mutation p.D337N 0.40 tolerated(0.74) unknown(0) TCGA-AR-A256-01 19 42821924 42821924 C G TMEM145 Missense_Mutation p.L322V 0.41 deleterious(0.01) probably_damaging(0.966) TCGA-AR-A256-01 19 4510826 4510826 A T PLIN4 Missense_Mutation p.L1035H 0.79 deleterious(0) possibly_damaging(0.67) TCGA-AR-A256-01 19 51582880 51582912 CCTGACGAACCACGCGCAGCACCTGCTGGGTGG - KLK14 In_Frame_Del p.A103_Q113del 0.33 TCGA-AR-A256-01 19 55087518 55087518 C T LILRA2 Silent p.L399L 0.49 TCGA-AR-A256-01 19 56029455 56029455 C A SSC5D Missense_Mutation p.P1271H 0.19 unknown(0) TCGA-AR-A256-01 19 56423120 56423120 C G NLRP13 Missense_Mutation p.R688T 0.52 deleterious(0) probably_damaging(0.997) TCGA-AR-A256-01 19 8974096 8974096 G T MUC16 Missense_Mutation p.A14192E 0.15 probably_damaging(0.991) TCGA-AR-A256-01 19 9004897 9004897 C T MUC16 Silent p.E13307E 0.24 TCGA-AR-A256-01 1 109957929 109957929 C T PSMA5 Silent p.E51E 0.34 TCGA-AR-A256-01 1 111966173 111966173 A C OVGP1 Missense_Mutation p.L159V 0.29 deleterious(0) probably_damaging(0.996) TCGA-AR-A256-01 1 115829056 115829056 G A NGF Missense_Mutation p.R121W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AR-A256-01 1 147230581 147230581 C T GJA5 Missense_Mutation p.G256S 0.14 tolerated(0.9) benign(0.001) TCGA-AR-A256-01 1 151227268 151227268 G C PSMD4 Missense_Mutation p.E4Q 0.59 deleterious(0.03) benign(0.339) TCGA-AR-A256-01 1 154164577 154164577 G A TPM3 5'UTR 0.13 TCGA-AR-A256-01 1 154166140 154166140 C T TPM3 5'Flank 0.10 TCGA-AR-A256-01 1 155255534 155255534 G C HCN3 Missense_Mutation p.C419S 0.22 deleterious(0) possibly_damaging(0.78) TCGA-AR-A256-01 1 155899583 155899583 G C KIAA0907 Missense_Mutation p.L102V 0.16 tolerated(0.14) possibly_damaging(0.472) TCGA-AR-A256-01 1 157095097 157095097 C T ETV3 Missense_Mutation p.V359I 0.31 tolerated(0.43) benign(0.031) TCGA-AR-A256-01 1 157811586 157811586 G C CD5L 5'UTR 0.26 TCGA-AR-A256-01 1 160063683 160063683 C G IGSF8 Missense_Mutation p.G241R 0.17 tolerated(0.09) probably_damaging(1) TCGA-AR-A256-01 1 161736108 161736108 C A ATF6 5'UTR 0.14 TCGA-AR-A256-01 1 169498986 169498986 C G F5 Missense_Mutation p.S1760T 0.15 tolerated(0.27) benign(0.073) TCGA-AR-A256-01 1 17017759 17017759 G C ESPNP RNA 0.67 TCGA-AR-A256-01 1 177001636 177001636 G A ASTN1 Missense_Mutation p.S274F 0.16 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-AR-A256-01 1 183083678 183083678 A G LAMC1 Missense_Mutation p.N345S 0.41 tolerated(0.77) benign(0.026) TCGA-AR-A256-01 1 223934702 223934702 C G CAPN2 Missense_Mutation p.I188M 0.60 deleterious(0.02) possibly_damaging(0.574) TCGA-AR-A256-01 1 235860498 235860498 G T LYST Silent p.V3483V 0.17 TCGA-AR-A256-01 1 236918429 236918429 G T ACTN2 Silent p.L695L 0.48 TCGA-AR-A256-01 1 245850803 245850803 C T KIF26B Silent p.F1506F 0.27 TCGA-AR-A256-01 1 247835593 247835593 G T OR13G1 Missense_Mutation p.P251T 0.22 tolerated(1) benign(0.178) TCGA-AR-A256-01 1 27720951 27720982 TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT - GPR3 Frame_Shift_Del p.R218Pfs*43 0.73 TCGA-AR-A256-01 1 27995849 27995849 T G IFI6 5'UTR 0.77 TCGA-AR-A256-01 1 39851426 39851426 G A MACF1 Silent p.L2661L 0.19 TCGA-AR-A256-01 1 6181593 6181593 G T CHD5 Missense_Mutation p.D1580E 0.74 tolerated_low_confidence(1) benign(0) TCGA-AR-A256-01 1 68903958 68903958 C T RPE65 Missense_Mutation p.R347H 0.31 deleterious(0.05) probably_damaging(0.981) TCGA-AR-A256-01 20 1299057 1299057 A G SDCBP2 Missense_Mutation p.Y44H 0.19 deleterious(0.03) probably_damaging(0.95) TCGA-AR-A256-01 20 3655440 3655440 G C ADAM33 Silent p.L130L 0.15 TCGA-AR-A256-01 20 36759526 36759526 C A TGM2 Missense_Mutation p.G628C 0.20 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 20 420924 420924 G T TBC1D20 Missense_Mutation p.H246N 0.13 tolerated(0.09) benign(0.232) TCGA-AR-A256-01 20 49208921 49208921 C G FAM65C Missense_Mutation p.R842P 0.22 tolerated(0.21) possibly_damaging(0.834) TCGA-AR-A256-01 20 49236530 49236530 C G FAM65C Missense_Mutation p.G84R 0.46 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 20 58349443 58349443 G C PHACTR3 Missense_Mutation p.E358Q 0.27 deleterious(0.03) benign(0.247) TCGA-AR-A256-01 20 629243 629243 C T RP5-850E9.3 3'UTR 0.25 TCGA-AR-A256-01 22 22842463 22842463 G A ZNF280B Missense_Mutation p.H421Y 0.45 deleterious(0) probably_damaging(0.99) TCGA-AR-A256-01 22 30221724 30221724 G A ASCC2 Missense_Mutation p.P43S 0.07 deleterious(0.01) possibly_damaging(0.852) TCGA-AR-A256-01 22 38308003 38308003 G C MICALL1 Missense_Mutation p.R64P 0.19 deleterious(0) possibly_damaging(0.746) TCGA-AR-A256-01 22 42321312 42321312 C G TNFRSF13C 3'UTR 0.50 TCGA-AR-A256-01 22 42962330 42962330 C A SERHL2 Missense_Mutation p.Q212K 0.69 tolerated(0.2) benign(0.14) TCGA-AR-A256-01 22 46790160 46790160 C T CELSR1 Splice_Site p.X1948_splice 0.48 TCGA-AR-A256-01 2 111144544 111144544 A C LINC01106 5'Flank 0.22 TCGA-AR-A256-01 2 119988527 119988547 TGGCTCACCTCACGGTGAGGC - STEAP3 5'UTR 0.60 TCGA-AR-A256-01 2 130737633 130737633 A G RAB6C 5'UTR 0.34 TCGA-AR-A256-01 2 159215021 159215021 A G CCDC148 Silent p.Y29Y 0.07 TCGA-AR-A256-01 2 179614480 179614480 A T TTN Intron 0.58 TCGA-AR-A256-01 2 197298089 197298089 C T HECW2 Missense_Mutation p.R20Q 0.09 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AR-A256-01 2 197656176 197656176 C T GTF3C3 Silent p.R140R 0.08 TCGA-AR-A256-01 2 201776110 201776110 C G ORC2 Missense_Mutation p.G550R 0.59 deleterious(0) probably_damaging(0.998) TCGA-AR-A256-01 2 219688442 219688442 T C PRKAG3 3'UTR 0.17 TCGA-AR-A256-01 2 220155281 220155281 C A PTPRN Silent p.R949R 0.93 TCGA-AR-A256-01 2 220193616 220193644 TTCAATGCCTATTTTAAACTCAATACTTA - RESP18 Splice_Site p.X214_splice 0.93 TCGA-AR-A256-01 2 234627956 234627956 T C UGT1A4 Missense_Mutation p.Y164H 0.88 tolerated(0.34) probably_damaging(1) TCGA-AR-A256-01 2 234873375 234873375 C A TRPM8 Missense_Mutation p.A618D 0.05 deleterious(0) probably_damaging(0.914) TCGA-AR-A256-01 2 234915545 234915545 A T TRPM8 Missense_Mutation p.K1060M 0.05 deleterious(0) probably_damaging(0.998) TCGA-AR-A256-01 2 235950141 235950141 G A SH3BP4 Missense_Mutation p.R243H 0.24 deleterious(0) probably_damaging(0.999) TCGA-AR-A256-01 2 26700900 26700900 A C OTOF Intron 0.20 TCGA-AR-A256-01 2 27165483 27165483 G A DPYSL5 Silent p.V435V 0.50 TCGA-AR-A256-01 2 27800889 27800889 C A C2orf16 Missense_Mutation p.Q484K 0.33 tolerated(0.13) benign(0.013) TCGA-AR-A256-01 2 32654312 32654312 T C BIRC6 Missense_Mutation p.S991P 0.16 benign(0.09) TCGA-AR-A256-01 2 42588392 42588392 C G COX7A2L 5'UTR 0.30 TCGA-AR-A256-01 2 48915906 48915906 C G LHCGR Missense_Mutation p.A344P 0.51 deleterious(0.01) benign(0.418) TCGA-AR-A256-01 2 61515816 61515816 G A USP34 Missense_Mutation p.T1582I 0.26 deleterious(0.01) possibly_damaging(0.795) TCGA-AR-A256-01 2 72360334 72360334 G T CYP26B1 Missense_Mutation p.L322M 0.33 tolerated(0.11) possibly_damaging(0.542) TCGA-AR-A256-01 2 74462341 74462341 C T SLC4A5 Missense_Mutation p.V774I 0.45 tolerated(0.08) benign(0.026) TCGA-AR-A256-01 2 74725096 74725096 G A LBX2 Silent p.S181S 0.17 TCGA-AR-A256-01 2 89197182 89197182 C T IGKV5-2 Missense_Mutation p.P76L 0.31 deleterious(0) benign(0.047) TCGA-AR-A256-01 2 90229346 90229346 G C IGKV1D-42 Missense_Mutation p.A56P 0.36 tolerated(0.14) possibly_damaging(0.513) TCGA-AR-A256-01 3 10430072 10430124 CCATCACGTGGGTTCCTGGGAAAGGGGACAAAAGCCAAGTTACCATTGCATGG - ATP2B2 Splice_Site p.X261_splice 0.95 TCGA-AR-A256-01 3 12203643 12203643 C T TIMP4 5'Flank 0.12 TCGA-AR-A256-01 3 124829135 124829135 C G SLC12A8 Silent p.S319S 0.33 TCGA-AR-A256-01 3 130313122 130313122 T C COL6A6 Intron 0.52 TCGA-AR-A256-01 3 164733798 164733798 T A SI Missense_Mutation p.D1277V 0.36 deleterious(0) possibly_damaging(0.616) TCGA-AR-A256-01 3 168834507 168834507 A G MECOM Missense_Mutation p.Y262H 0.42 deleterious(0) probably_damaging(0.999) TCGA-AR-A256-01 3 170875269 170875269 G C TNIK Missense_Mutation p.Q401E 0.39 tolerated(0.22) unknown(0) TCGA-AR-A256-01 3 182665361 182665361 C T DCUN1D1 Missense_Mutation p.D194N 0.22 deleterious(0.03) benign(0.235) TCGA-AR-A256-01 3 183959139 183959139 G T VWA5B2 Missense_Mutation p.D1043Y 0.26 deleterious(0.03) benign(0.042) TCGA-AR-A256-01 3 194063051 194063051 G A CPN2 Silent p.T127T 0.49 TCGA-AR-A256-01 3 196744075 196744075 C T MFI2 Missense_Mutation p.E267K 0.53 tolerated(0.08) possibly_damaging(0.523) TCGA-AR-A256-01 3 44894462 44894462 T G KIF15 3'UTR 0.89 TCGA-AR-A256-01 3 45872443 45872443 C G LZTFL1 Missense_Mutation p.A188P 0.75 tolerated(0.22) benign(0.301) TCGA-AR-A256-01 3 49054878 49054878 G A DALRD3 Missense_Mutation p.H263Y 0.38 tolerated(1) benign(0) TCGA-AR-A256-01 3 52822258 52822258 C A ITIH1 Missense_Mutation p.D672E 0.40 deleterious(0.03) possibly_damaging(0.467) TCGA-AR-A256-01 3 63466633 63466633 G A SYNPR Splice_Site p.X70_splice 0.35 TCGA-AR-A256-01 4 103500040 103500040 C T NFKB1 Missense_Mutation p.R192W 0.71 deleterious(0.01) benign(0.415) TCGA-AR-A256-01 4 119951302 119951302 C A SYNPO2 Missense_Mutation p.Q458K 0.13 tolerated(0.55) benign(0.02) TCGA-AR-A256-01 4 153247168 153247168 T C FBXW7 Missense_Mutation p.Y545C 0.72 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 4 190873403 190873403 G A FRG1 Missense_Mutation p.D74N 0.41 deleterious(0.02) benign(0.245) TCGA-AR-A256-01 4 36130231 36130231 C A ARAP2 Silent p.V1188V 0.77 TCGA-AR-A256-01 4 5624640 5624640 G A EVC2 Nonsense_Mutation p.Q709* 0.40 TCGA-AR-A256-01 4 56345865 56345865 C A CLOCK Missense_Mutation p.D17Y 0.76 deleterious(0) probably_damaging(0.926) TCGA-AR-A256-01 4 6055709 6055709 A C JAKMIP1 Intron 0.43 TCGA-AR-A256-01 5 108516525 108516525 A G FER Missense_Mutation p.E709G 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-AR-A256-01 5 124080554 124080556 CTT - ZNF608 In_Frame_Del p.K43del 0.96 TCGA-AR-A256-01 5 133541707 133541725 CCACCAATTCTAAACAGTT - PPP2CA Frame_Shift_Del p.E67Afs*29 0.41 TCGA-AR-A256-01 5 140769218 140769218 A T PCDHGB4 Silent p.V589V 0.85 TCGA-AR-A256-01 5 141051281 141051281 G T ARAP3 Missense_Mutation p.F570L 0.92 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A256-01 5 176562116 176562116 C T NSD1 Silent p.T4T 0.31 TCGA-AR-A256-01 5 7709446 7709446 A G ADCY2 Silent p.A508A 0.32 TCGA-AR-A256-01 5 78350004 78350004 T C DMGDH Intron 0.79 TCGA-AR-A256-01 6 117589357 117589357 T C VGLL2 Missense_Mutation p.Y32H 0.83 deleterious(0) probably_damaging(0.914) TCGA-AR-A256-01 6 147636833 147636833 A C STXBP5 Silent p.R529R 0.35 TCGA-AR-A256-01 6 167789534 167789534 T A TCP10 Missense_Mutation p.N203I 0.84 tolerated(0.08) possibly_damaging(0.698) TCGA-AR-A256-01 6 31474128 31474128 A C MICB Silent p.T178T 0.63 TCGA-AR-A256-01 6 31937797 31937797 C T DXO Missense_Mutation p.V350I 0.58 deleterious(0.04) benign(0.004) TCGA-AR-A256-01 6 37620061 37620061 G A MDGA1 Silent p.N346N 0.52 TCGA-AR-A256-01 6 43018922 43018940 GCTCACATCTGCCAGCTGA - CUL7 Frame_Shift_Del p.L419Gfs*127 0.38 TCGA-AR-A256-01 6 44241130 44241130 C T TMEM151B Missense_Mutation p.R155C 0.15 deleterious(0.01) possibly_damaging(0.781) TCGA-AR-A256-01 6 52268806 52268806 C G PAQR8 Silent p.P265P 0.48 TCGA-AR-A256-01 6 70071303 70071303 C A BAI3 Missense_Mutation p.P1380T 0.52 deleterious(0.02) probably_damaging(0.996) TCGA-AR-A256-01 6 83728709 83728709 G A UBE3D Silent p.I331I 0.30 TCGA-AR-A256-01 6 86203631 86203631 G A NT5E Missense_Mutation p.R545Q 0.33 deleterious(0) probably_damaging(0.973) TCGA-AR-A256-01 7 100696289 100696289 T A MUC17 Missense_Mutation p.W4376R 0.44 unknown(0) TCGA-AR-A256-01 7 100777023 100777023 C G SERPINE1 Missense_Mutation p.P250A 0.43 deleterious(0) probably_damaging(1) TCGA-AR-A256-01 7 102953097 102953097 A C DNAJC2 Intron 0.05 TCGA-AR-A256-01 7 108131874 108131874 T C PNPLA8 Missense_Mutation p.R555G 0.13 deleterious(0.01) possibly_damaging(0.627) TCGA-AR-A256-01 7 111640561 111640562 - T DOCK4 Frame_Shift_Ins p.N50Kfs*27 0.18 TCGA-AR-A256-01 7 127222558 127222558 G A GCC1 Missense_Mutation p.S613F 0.23 tolerated(0.67) benign(0.062) TCGA-AR-A256-01 7 134678266 134678266 C G AGBL3 Missense_Mutation p.F49L 0.17 tolerated(0.22) benign(0.015) TCGA-AR-A256-01 7 146471394 146471394 C T CNTNAP2 Silent p.L43L 0.33 TCGA-AR-A256-01 7 23809335 23809335 C G STK31 Missense_Mutation p.T558S 0.80 tolerated(0.06) benign(0.006) TCGA-AR-A256-01 7 7676652 7676652 T A RPA3 Missense_Mutation p.L115F 0.73 tolerated(1) benign(0.002) TCGA-AR-A256-01 7 99026733 99026734 - CGTAC ATP5J2-PTCD1 Frame_Shift_Ins p.A352Gfs*9 0.39 TCGA-AR-A256-01 8 110980364 110980364 C T KCNV1 Missense_Mutation p.E486K 0.17 deleterious(0.01) possibly_damaging(0.681) TCGA-AR-A256-01 8 133182580 133182580 C A KCNQ3 Splice_Site p.X412_splice 0.29 TCGA-AR-A256-01 8 139890242 139890242 G T COL22A1 Missense_Mutation p.P137T 0.33 unknown(0) TCGA-AR-A256-01 8 27634128 27634128 G C ESCO2 Silent p.L101L 0.81 TCGA-AR-A256-01 8 38852899 38852899 C G TM2D2 Missense_Mutation p.D85H 0.12 deleterious(0.01) benign(0.013) TCGA-AR-A256-01 8 74859004 74859004 G A TCEB1 Missense_Mutation p.S67L 0.68 deleterious(0.01) benign(0.156) TCGA-AR-A256-01 8 75756328 75756328 C T PI15 Missense_Mutation p.T129I 0.08 tolerated(0.39) probably_damaging(0.999) TCGA-AR-A256-01 9 101243280 101243280 C A GABBR2 Splice_Site p.X245_splice 0.07 TCGA-AR-A256-01 9 104125223 104125240 TAGGTAAATAGCCATAGA - BAAT In_Frame_Del p.S243_L248del 0.50 TCGA-AR-A256-01 9 107535382 107535382 T G NIPSNAP3B 3'UTR 0.22 TCGA-AR-A256-01 9 107546575 107546576 - C ABCA1 3'UTR 0.39 TCGA-AR-A256-01 9 114176865 114176865 C A KIAA0368 Missense_Mutation p.A789S 0.42 tolerated(0.75) benign(0.019) TCGA-AR-A256-01 9 115931533 115931533 G C FKBP15 Silent p.L1152L 0.44 TCGA-AR-A256-01 9 116053191 116053191 A C PRPF4 Missense_Mutation p.T424P 0.38 deleterious(0) probably_damaging(0.998) TCGA-AR-A256-01 9 127911968 127911968 G A PPP6C Missense_Mutation p.T338M 0.18 tolerated(0.22) probably_damaging(0.98) TCGA-AR-A256-01 9 128246850 128246850 T C MAPKAP1 Missense_Mutation p.D360G 0.57 deleterious(0.04) benign(0.003) TCGA-AR-A256-01 9 131285025 131285025 C A GLE1 Silent p.R171R 0.08 TCGA-AR-A256-01 9 131553046 131553046 T C TBC1D13 Missense_Mutation p.C44R 0.78 deleterious(0) probably_damaging(0.977) TCGA-AR-A256-01 9 139835371 139835371 C T FBXW5 3'UTR 0.82 TCGA-AR-A256-01 9 27950343 27950343 G A LINGO2 Silent p.S109S 0.45 TCGA-AR-A256-01 9 33900241 33900241 G A UBE2R2 Missense_Mutation p.E112K 0.54 deleterious(0.02) probably_damaging(0.922) TCGA-AR-A256-01 9 34976689 34976689 C G KIAA1045 Missense_Mutation p.D267E 0.09 tolerated(0.28) probably_damaging(0.998) TCGA-AR-A256-01 9 95599746 95599746 C T ANKRD19P RNA 0.29 TCGA-AR-A256-01 X 148568514 148568514 G A IDS Silent p.G163G 0.71 TCGA-AR-A256-01 X 153225483 153225483 G T HCFC1 Missense_Mutation p.T405K 0.66 deleterious(0.03) benign(0.252) TCGA-AR-A2LE-01 10 104614094 104614094 G A C10orf32 Silent p.V17V 0.34 TCGA-AR-A2LE-01 10 128974483 128974483 C T FAM196A Silent p.Q59Q 0.20 TCGA-AR-A2LE-01 10 17126443 17126443 C T CUBN Missense_Mutation p.G710R 0.40 deleterious(0.02) probably_damaging(1) TCGA-AR-A2LE-01 10 28270402 28270402 G C ARMC4 Missense_Mutation p.S310C 0.37 deleterious(0.02) possibly_damaging(0.592) TCGA-AR-A2LE-01 10 48371219 48371219 C G ZNF488 Silent p.L229L 0.36 TCGA-AR-A2LE-01 10 50682204 50682204 G T ERCC6 Missense_Mutation p.P823T 0.40 tolerated(0.09) benign(0.382) TCGA-AR-A2LE-01 11 113704158 113704158 G A USP28 Missense_Mutation p.S248L 0.39 deleterious(0) probably_damaging(0.963) TCGA-AR-A2LE-01 11 115111079 115111079 G A CADM1 Silent p.I62I 0.34 TCGA-AR-A2LE-01 11 122931825 122931825 C T HSPA8 Intron 0.47 TCGA-AR-A2LE-01 11 16837807 16837807 G A PLEKHA7 Missense_Mutation p.S624L 0.49 tolerated(0.06) benign(0.074) TCGA-AR-A2LE-01 11 1904706 1904706 G A LSP1 Silent p.L266L 0.29 TCGA-AR-A2LE-01 11 46418865 46418865 C T AMBRA1 3'UTR 0.39 TCGA-AR-A2LE-01 11 47330876 47330876 G A MADD Missense_Mutation p.D1326N 0.19 tolerated(0.16) probably_damaging(0.999) TCGA-AR-A2LE-01 11 47363598 47363598 C T MYBPC3 Silent p.L578L 0.28 TCGA-AR-A2LE-01 11 64012235 64012235 C G PPP1R14B Missense_Mutation p.Q145H 0.38 deleterious(0.01) probably_damaging(0.967) TCGA-AR-A2LE-01 11 6432496 6432496 G A APBB1 Silent p.L28L 0.32 TCGA-AR-A2LE-01 11 64679447 64679447 G A ATG2A Silent p.F365F 0.29 TCGA-AR-A2LE-01 11 6500132 6500132 C T ARFIP2 Missense_Mutation p.E125K 0.31 deleterious(0.01) possibly_damaging(0.842) TCGA-AR-A2LE-01 11 65064614 65064614 G A POLA2 Silent p.V557V 0.30 TCGA-AR-A2LE-01 11 65380557 65380557 C T MAP3K11 Missense_Mutation p.R224H 0.26 deleterious(0) probably_damaging(0.991) TCGA-AR-A2LE-01 11 65380565 65380565 C T MAP3K11 Silent p.Q221Q 0.23 TCGA-AR-A2LE-01 11 6568698 6568698 G A DNHD1 Missense_Mutation p.E2177K 0.27 possibly_damaging(0.637) TCGA-AR-A2LE-01 11 6645007 6645007 G A DCHS1 Missense_Mutation p.H2634Y 0.29 tolerated(0.11) benign(0.085) TCGA-AR-A2LE-01 11 6648365 6648365 G C DCHS1 Missense_Mutation p.L1969V 0.16 tolerated(0.71) benign(0.021) TCGA-AR-A2LE-01 11 67077339 67077339 G C SSH3 Missense_Mutation p.E437Q 0.30 deleterious(0.04) probably_damaging(0.992) TCGA-AR-A2LE-01 11 77404597 77404597 C G RSF1 Silent p.L925L 0.28 TCGA-AR-A2LE-01 11 9202526 9202526 G A DENND5A Missense_Mutation p.L415F 0.30 deleterious(0.02) possibly_damaging(0.795) TCGA-AR-A2LE-01 12 100452152 100452152 G C UHRF1BP1L Nonsense_Mutation p.S968* 0.37 TCGA-AR-A2LE-01 12 11035079 11035079 G A PRH1 Intron 0.14 TCGA-AR-A2LE-01 12 11083416 11083416 C T PRH2 Missense_Mutation p.P86S 0.13 tolerated_low_confidence(0.14) unknown(0) TCGA-AR-A2LE-01 12 113400658 113400658 G A OAS3 Missense_Mutation p.E679K 0.29 tolerated(0.08) possibly_damaging(0.85) TCGA-AR-A2LE-01 12 113530988 113530988 G A DTX1 Silent p.K321K 0.38 TCGA-AR-A2LE-01 12 11421068 11421068 G A PRB3 Nonsense_Mutation p.R39* 0.35 TCGA-AR-A2LE-01 12 118682749 118682749 C G TAOK3 Missense_Mutation p.E48Q 0.44 tolerated(0.05) possibly_damaging(0.61) TCGA-AR-A2LE-01 12 120139493 120139493 G A CIT Silent p.F1826F 0.21 TCGA-AR-A2LE-01 12 120875960 120875960 C T COX6A1 Missense_Mutation p.R11W 0.33 deleterious(0.04) unknown(0) TCGA-AR-A2LE-01 12 121840567 121840567 C G RNF34 5'UTR 0.27 TCGA-AR-A2LE-01 12 122107379 122107379 G C MORN3 Missense_Mutation p.S4C 0.31 tolerated(0.19) benign(0.289) TCGA-AR-A2LE-01 12 130184752 130184752 G A TMEM132D Silent p.L191L 0.33 TCGA-AR-A2LE-01 12 27058345 27058345 T C ASUN 3'UTR 0.33 TCGA-AR-A2LE-01 12 313809 313809 G A SLC6A12 Silent p.F90F 0.35 TCGA-AR-A2LE-01 12 40110611 40110611 G C C12orf40 Missense_Mutation p.D489H 0.37 deleterious(0) possibly_damaging(0.866) TCGA-AR-A2LE-01 12 48143749 48143749 G A RAPGEF3 Silent p.L261L 0.32 TCGA-AR-A2LE-01 12 48866774 48866774 G A ANP32D Silent p.L109L 0.35 TCGA-AR-A2LE-01 12 50384112 50384112 C G RACGAP1 Missense_Mutation p.S613T 0.35 tolerated(0.1) benign(0.014) TCGA-AR-A2LE-01 12 56221447 56221447 G A DNAJC14 Silent p.L332L 0.19 TCGA-AR-A2LE-01 12 6560131 6560131 C T CD27 Silent p.F203F 0.16 TCGA-AR-A2LE-01 12 69967870 69967870 C T FRS2 Missense_Mutation p.S221F 0.38 deleterious(0.01) possibly_damaging(0.726) TCGA-AR-A2LE-01 12 85531727 85531727 G A LRRIQ1 Missense_Mutation p.E1437K 0.22 tolerated(0.09) benign(0.091) TCGA-AR-A2LE-01 12 8756785 8756785 G A AICDA 3'UTR 0.42 TCGA-AR-A2LE-01 12 8803117 8803117 G A MFAP5 Missense_Mutation p.H106Y 0.16 deleterious(0.02) benign(0.049) TCGA-AR-A2LE-01 12 95566496 95566496 C T FGD6 Silent p.Q822Q 0.45 TCGA-AR-A2LE-01 12 96181027 96181027 G A NTN4 Missense_Mutation p.S92F 0.37 deleterious(0.04) possibly_damaging(0.571) TCGA-AR-A2LE-01 12 98926657 98926657 G A TMPO Missense_Mutation p.E208K 0.33 deleterious_low_confidence(0.01) benign(0.321) TCGA-AR-A2LE-01 13 109318347 109318347 G A MYO16 Missense_Mutation p.E26K 0.38 deleterious(0) possibly_damaging(0.51) TCGA-AR-A2LE-01 13 28834664 28834664 C T PAN3 Silent p.F443F 0.36 TCGA-AR-A2LE-01 13 28862169 28862169 G T PAN3 Missense_Mutation p.L811F 0.43 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 13 95264620 95264620 G C GPR180 Missense_Mutation p.D161H 0.22 deleterious(0) probably_damaging(0.995) TCGA-AR-A2LE-01 13 96489411 96489411 G A UGGT2 Missense_Mutation p.P1444S 0.34 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 13 99378462 99378462 C T SLC15A1 Missense_Mutation p.A54T 0.43 tolerated(0.26) benign(0.017) TCGA-AR-A2LE-01 14 103429404 103429404 C T CDC42BPB Missense_Mutation p.D939N 0.15 tolerated(0.22) possibly_damaging(0.788) TCGA-AR-A2LE-01 14 105221971 105221971 G A SIVA1 Silent p.K41K 0.56 TCGA-AR-A2LE-01 14 21944761 21944761 G A RAB2B Intron 0.29 TCGA-AR-A2LE-01 14 35331501 35331501 G A BAZ1A Silent p.C47C 0.16 TCGA-AR-A2LE-01 14 44975332 44975332 C T FSCB Missense_Mutation p.E287K 0.32 deleterious(0.04) possibly_damaging(0.844) TCGA-AR-A2LE-01 14 50862439 50862439 G A CDKL1 Missense_Mutation p.R51W 0.33 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 14 52164840 52164840 C T FRMD6 Intron 0.34 TCGA-AR-A2LE-01 14 57858277 57858277 C T NAA30 Missense_Mutation p.S201L 0.17 tolerated(0.11) benign(0.003) TCGA-AR-A2LE-01 14 61789027 61789027 G A PRKCH Missense_Mutation p.E70K 0.36 tolerated(0.06) possibly_damaging(0.711) TCGA-AR-A2LE-01 14 62550950 62550950 C T SYT16 Missense_Mutation p.H491Y 0.34 tolerated(0.25) benign(0.004) TCGA-AR-A2LE-01 14 64625489 64625489 G C SYNE2 Missense_Mutation p.L5313F 0.33 probably_damaging(0.947) TCGA-AR-A2LE-01 14 73727999 73727999 C G PAPLN Missense_Mutation p.H721D 0.41 deleterious(0.01) benign(0.062) TCGA-AR-A2LE-01 15 23060892 23060892 C G NIPA1 Missense_Mutation p.Q80H 0.22 deleterious(0) probably_damaging(0.925) TCGA-AR-A2LE-01 15 33988664 33988664 G T RYR3 Nonsense_Mutation p.E2036* 0.30 TCGA-AR-A2LE-01 15 34129917 34129917 C T RYR3 Silent p.F3912F 0.13 TCGA-AR-A2LE-01 15 34517825 34517825 G C EMC4 Missense_Mutation p.E59Q 0.39 tolerated(0.18) benign(0.141) TCGA-AR-A2LE-01 15 42162652 42162652 G A SPTBN5 Nonsense_Mutation p.Q1852* 0.32 TCGA-AR-A2LE-01 15 43990929 43990929 G C CKMT1A Missense_Mutation p.D368H 0.29 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 15 54306762 54306762 C T UNC13C Silent p.S554S 0.43 TCGA-AR-A2LE-01 15 77763314 77763314 G A HMG20A Silent p.Q171Q 0.32 TCGA-AR-A2LE-01 15 79750455 79750455 G A KIAA1024 Missense_Mutation p.D656N 0.13 tolerated(0.13) benign(0.25) TCGA-AR-A2LE-01 15 81611704 81611704 C G STARD5 Missense_Mutation p.E126Q 0.41 deleterious(0.02) possibly_damaging(0.712) TCGA-AR-A2LE-01 15 81630256 81630256 G A TMC3 Silent p.I697I 0.38 TCGA-AR-A2LE-01 15 83437670 83437670 C G FSD2 Silent p.L505L 0.24 TCGA-AR-A2LE-01 15 91292721 91292721 G A BLM Missense_Mutation p.E75K 0.10 tolerated(0.47) benign(0.026) TCGA-AR-A2LE-01 15 91293291 91293291 G C BLM Missense_Mutation p.E265Q 0.22 tolerated(0.13) possibly_damaging(0.662) TCGA-AR-A2LE-01 16 15831389 15831389 C T MYH11 Silent p.Q1077Q 0.14 TCGA-AR-A2LE-01 16 4164034 4164034 G C ADCY9 Missense_Mutation p.I470M 0.26 tolerated(0.08) probably_damaging(0.946) TCGA-AR-A2LE-01 16 58589354 58589354 C T CNOT1 Missense_Mutation p.E898K 0.38 deleterious(0) probably_damaging(0.99) TCGA-AR-A2LE-01 16 67433355 67433355 C T ZDHHC1 Missense_Mutation p.A145T 0.56 deleterious(0.02) benign(0.067) TCGA-AR-A2LE-01 16 68012464 68012464 C G DPEP3 Missense_Mutation p.Q185H 0.42 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 16 68844175 68844175 C T CDH1 Nonsense_Mutation p.Q255* 0.54 TCGA-AR-A2LE-01 16 70841561 70841561 C T HYDIN Silent p.L5096L 0.52 TCGA-AR-A2LE-01 16 72992023 72992023 G A ZFHX3 Silent p.P674P 0.28 TCGA-AR-A2LE-01 16 8719484 8719484 G A METTL22 5'UTR 0.15 TCGA-AR-A2LE-01 17 15961364 15961364 G A NCOR1 Nonsense_Mutation p.Q2009* 0.25 TCGA-AR-A2LE-01 17 16047011 16047011 C T NCOR1 Splice_Site p.X361_splice 0.38 TCGA-AR-A2LE-01 17 18059584 18059584 C G MYO15A Missense_Mutation p.I2845M 0.55 unknown(0) TCGA-AR-A2LE-01 17 21319179 21319179 C T KCNJ12 Silent p.F175F 0.15 TCGA-AR-A2LE-01 17 33802325 33802325 C G SLFN12L Missense_Mutation p.D462H 0.41 deleterious(0) probably_damaging(0.997) TCGA-AR-A2LE-01 17 38978658 38978658 C T KRT10 Silent p.G60G 0.40 TCGA-AR-A2LE-01 17 58124701 58124701 G A HEATR6 Missense_Mutation p.S913L 0.35 tolerated(0.17) benign(0.002) TCGA-AR-A2LE-01 17 58124724 58124724 G A HEATR6 Silent p.L905L 0.29 TCGA-AR-A2LE-01 17 59489466 59489466 G T C17orf82 Nonsense_Mutation p.E44* 0.24 TCGA-AR-A2LE-01 17 73150550 73150550 G A HN1 5'UTR 0.33 TCGA-AR-A2LE-01 17 73177269 73177269 A T SUMO2 Silent p.T12T 0.40 TCGA-AR-A2LE-01 17 76161980 76161980 G A C17orf99 Silent p.Q217Q 0.34 TCGA-AR-A2LE-01 17 76171214 76171214 C T TK1 Missense_Mutation p.E144K 0.64 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 17 78087103 78087103 C G GAA Silent p.L709L 0.35 TCGA-AR-A2LE-01 18 19110236 19110236 G A ESCO1 3'UTR 0.21 TCGA-AR-A2LE-01 18 20837322 20837322 G C CABLES1 Missense_Mutation p.Q631H 0.53 deleterious(0.03) possibly_damaging(0.898) TCGA-AR-A2LE-01 18 29126196 29126196 C A DSG2 Silent p.T949T 0.19 TCGA-AR-A2LE-01 18 29496332 29496332 G A TRAPPC8 Nonsense_Mutation p.Q174* 0.29 TCGA-AR-A2LE-01 18 31319214 31319214 G C ASXL3 Missense_Mutation p.E616Q 0.42 benign(0.064) TCGA-AR-A2LE-01 18 40695546 40695546 G C RIT2 5'UTR 0.26 TCGA-AR-A2LE-01 18 56606717 56606717 C G ZNF532 Missense_Mutation p.L857V 0.30 tolerated(0.08) benign(0.13) TCGA-AR-A2LE-01 18 67534630 67534630 C T CD226 Missense_Mutation p.R283K 0.17 tolerated(1) benign(0) TCGA-AR-A2LE-01 18 77193689 77193689 G A NFATC1 Missense_Mutation p.G433D 0.45 deleterious(0) probably_damaging(0.984) TCGA-AR-A2LE-01 19 10257178 10257178 G A DNMT1 Silent p.L915L 0.10 TCGA-AR-A2LE-01 19 10664479 10664479 C T KRI1 3'UTR 0.56 TCGA-AR-A2LE-01 19 10664628 10664628 C T KRI1 Silent p.%3D 0.37 TCGA-AR-A2LE-01 19 10664753 10664753 C T KRI1 Silent p.V668V 0.24 TCGA-AR-A2LE-01 19 10664780 10664780 C T KRI1 Silent p.K659K 0.23 TCGA-AR-A2LE-01 19 10664914 10664914 C T KRI1 Missense_Mutation p.E615K 0.26 tolerated(1) benign(0) TCGA-AR-A2LE-01 19 10664921 10664921 C T KRI1 Silent p.Q612Q 0.29 TCGA-AR-A2LE-01 19 11031600 11031600 C T CARM1 Silent p.L505L 0.34 TCGA-AR-A2LE-01 19 11216172 11216172 G A LDLR Missense_Mutation p.C197Y 0.46 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 19 14165683 14165683 G A PALM3 Silent p.I252I 0.43 TCGA-AR-A2LE-01 19 1487960 1487960 C T PCSK4 Intron 0.43 TCGA-AR-A2LE-01 19 1487996 1487996 G A PCSK4 Silent p.I161I 0.39 TCGA-AR-A2LE-01 19 23928027 23928027 C T ZNF681 Missense_Mutation p.E109K 0.26 tolerated(0.29) possibly_damaging(0.636) TCGA-AR-A2LE-01 19 34991146 34991146 C A WTIP Nonsense_Mutation p.S422* 0.33 TCGA-AR-A2LE-01 19 37239924 37239924 T C ZNF850 Missense_Mutation p.Y673C 0.67 deleterious(0) probably_damaging(0.997) TCGA-AR-A2LE-01 19 3924731 3924731 C T ATCAY 3'UTR 0.56 TCGA-AR-A2LE-01 19 39423191 39423191 G A MRPS12 Missense_Mutation p.E90K 0.45 deleterious(0.02) probably_damaging(1) TCGA-AR-A2LE-01 19 44116846 44116846 G C SRRM5 Silent p.L191L 0.30 TCGA-AR-A2LE-01 19 45666465 45666465 C T TRAPPC6A Silent p.V169V 0.44 TCGA-AR-A2LE-01 19 47548460 47548460 C T NPAS1 Missense_Mutation p.P442S 0.36 tolerated(0.09) benign(0.108) TCGA-AR-A2LE-01 19 49377172 49377172 G A PPP1R15A Missense_Mutation p.E228K 0.34 deleterious(0.03) possibly_damaging(0.899) TCGA-AR-A2LE-01 19 50370348 50370348 C T PNKP Silent p.L38L 0.50 TCGA-AR-A2LE-01 19 53472294 53472294 G A ZNF702P RNA 0.42 TCGA-AR-A2LE-01 19 54230210 54230210 G A MIR526A2 RNA 0.40 TCGA-AR-A2LE-01 19 54385850 54385850 G A PRKCG Silent p.K34K 0.32 TCGA-AR-A2LE-01 19 56190110 56190110 C A EPN1 Silent p.L150L 0.18 TCGA-AR-A2LE-01 19 57326865 57326865 G A PEG3 Missense_Mutation p.S982F 0.41 deleterious(0.05) possibly_damaging(0.893) TCGA-AR-A2LE-01 19 58899472 58899472 G A RPS5 5'UTR 0.31 TCGA-AR-A2LE-01 19 618718 618718 C T POLRMT Missense_Mutation p.G1104R 0.38 tolerated(0.35) benign(0.032) TCGA-AR-A2LE-01 19 814640 814640 C G LPPR3 Missense_Mutation p.E237Q 0.27 tolerated_low_confidence(0.65) unknown(0) TCGA-AR-A2LE-01 19 815252 815252 C G LPPR3 Missense_Mutation p.E113Q 0.36 deleterious(0.02) probably_damaging(0.969) TCGA-AR-A2LE-01 19 830718 830731 AGGCCAACCTCACC - AZU1 Frame_Shift_Del p.A125Qfs*98 0.24 TCGA-AR-A2LE-01 19 8974089 8974089 C A MUC16 Missense_Mutation p.Q14194H 0.44 probably_damaging(0.994) TCGA-AR-A2LE-01 1 100547556 100547556 C G HIAT1 Intron 0.38 TCGA-AR-A2LE-01 1 109795620 109795620 C T CELSR2 Silent p.I973I 0.41 TCGA-AR-A2LE-01 1 113057712 113057712 C T WNT2B Silent p.L133L 0.46 TCGA-AR-A2LE-01 1 114128110 114128110 C G MAGI3 Missense_Mutation p.Q219E 0.25 deleterious(0.03) probably_damaging(0.954) TCGA-AR-A2LE-01 1 114680259 114680259 C T SYT6 Missense_Mutation p.R225H 0.19 deleterious(0) probably_damaging(0.996) TCGA-AR-A2LE-01 1 115272884 115272884 C G CSDE1 Missense_Mutation p.E497Q 0.33 tolerated(0.06) probably_damaging(0.915) TCGA-AR-A2LE-01 1 12919628 12919628 C G PRAMEF2 Missense_Mutation p.S123C 0.17 tolerated(0.06) probably_damaging(0.935) TCGA-AR-A2LE-01 1 12979942 12979942 C T PRAMEF7 Silent p.L378L 0.12 TCGA-AR-A2LE-01 1 150241120 150241120 G A APH1A Missense_Mutation p.R31C 0.25 deleterious(0) possibly_damaging(0.84) TCGA-AR-A2LE-01 1 150478119 150478119 C G TARS2 Missense_Mutation p.S649C 0.26 tolerated(0.05) benign(0.013) TCGA-AR-A2LE-01 1 152284654 152284654 C G FLG Missense_Mutation p.R903T 0.15 possibly_damaging(0.573) TCGA-AR-A2LE-01 1 152759897 152759897 C G LCE1E Missense_Mutation p.S41C 0.16 tolerated_low_confidence(0.06) unknown(0) TCGA-AR-A2LE-01 1 155030792 155030792 C G ADAM15 Missense_Mutation p.L598V 0.23 tolerated(0.31) benign(0.021) TCGA-AR-A2LE-01 1 155580049 155580049 G A MSTO1 Missense_Mutation p.G4R 0.20 tolerated(0.58) benign(0.223) TCGA-AR-A2LE-01 1 156917169 156917169 C T ARHGEF11 Silent p.K805K 0.24 TCGA-AR-A2LE-01 1 158225111 158225111 G A CD1A Missense_Mutation p.R99H 0.26 tolerated(0.41) benign(0) TCGA-AR-A2LE-01 1 158736307 158736307 G A OR6N1 Missense_Mutation p.H56Y 0.23 deleterious(0) possibly_damaging(0.904) TCGA-AR-A2LE-01 1 159907572 159907572 C A IGSF9 Missense_Mutation p.D102Y 0.30 deleterious(0) possibly_damaging(0.874) TCGA-AR-A2LE-01 1 160794000 160794000 G A LY9 Silent p.E620E 0.28 TCGA-AR-A2LE-01 1 161161333 161161333 G T ADAMTS4 Silent p.V703V 0.29 TCGA-AR-A2LE-01 1 161821621 161821621 C T ATF6 Missense_Mutation p.L477F 0.24 deleterious(0.01) probably_damaging(0.944) TCGA-AR-A2LE-01 1 16202794 16202794 G A SPEN Missense_Mutation p.D168N 0.40 probably_damaging(0.995) TCGA-AR-A2LE-01 1 167868724 167868724 G C ADCY10 Missense_Mutation p.C193W 0.23 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 1 167873126 167873126 C T ADCY10 Silent p.E84E 0.21 TCGA-AR-A2LE-01 1 167873216 167873216 C T ADCY10 Missense_Mutation p.M54I 0.25 deleterious(0.01) possibly_damaging(0.823) TCGA-AR-A2LE-01 1 168044617 168044617 G T DCAF6 Nonsense_Mutation p.E934* 0.29 TCGA-AR-A2LE-01 1 16901178 16901178 C T NBPF1 Silent p.P734P 0.14 TCGA-AR-A2LE-01 1 16935012 16935012 C T NBPF1 5'UTR 0.08 TCGA-AR-A2LE-01 1 17350557 17350557 C T SDHB Missense_Mutation p.E185K 0.33 deleterious(0) probably_damaging(0.989) TCGA-AR-A2LE-01 1 182787764 182787764 C T NPL Silent p.F182F 0.23 TCGA-AR-A2LE-01 1 186282917 186282917 G C TPR 3'UTR 0.22 TCGA-AR-A2LE-01 1 193181198 193181198 C A CDC73 Missense_Mutation p.S345Y 0.26 tolerated(0.13) probably_damaging(0.961) TCGA-AR-A2LE-01 1 196300365 196300365 G A KCNT2 Missense_Mutation p.S675F 0.30 deleterious(0.03) possibly_damaging(0.814) TCGA-AR-A2LE-01 1 197091562 197091562 G A ASPM Missense_Mutation p.S1185F 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-AR-A2LE-01 1 197091641 197091641 C T ASPM Missense_Mutation p.D1159N 0.26 tolerated(0.11) benign(0.073) TCGA-AR-A2LE-01 1 202724449 202724449 G C KDM5B Missense_Mutation p.F496L 0.15 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 1 202934584 202934584 C A CYB5R1 Missense_Mutation p.K130N 0.23 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 1 203186226 203186226 C G CHIT1 Missense_Mutation p.E398Q 0.28 tolerated(0.42) benign(0.209) TCGA-AR-A2LE-01 1 203316865 203316865 C T FMOD Silent p.L178L 0.30 TCGA-AR-A2LE-01 1 203317297 203317297 C G FMOD Missense_Mutation p.Q34H 0.25 tolerated(0.14) possibly_damaging(0.556) TCGA-AR-A2LE-01 1 203809473 203809473 C T ZC3H11A Missense_Mutation p.S338L 0.25 tolerated(0.05) benign(0.02) TCGA-AR-A2LE-01 1 204010229 204010229 C G LINC00303 RNA 0.31 TCGA-AR-A2LE-01 1 204082064 204082064 C G SOX13 Missense_Mutation p.I7M 0.36 tolerated_low_confidence(0.06) benign(0.176) TCGA-AR-A2LE-01 1 213415448 213415448 G A RPS6KC1 Missense_Mutation p.E877K 0.35 tolerated(0.15) benign(0.007) TCGA-AR-A2LE-01 1 217688161 217688161 C T GPATCH2 Intron 0.17 TCGA-AR-A2LE-01 1 228432244 228432244 G T OBSCN Missense_Mutation p.Q1243H 0.24 possibly_damaging(0.792) TCGA-AR-A2LE-01 1 231398518 231398518 G A GNPAT Missense_Mutation p.R163Q 0.24 deleterious(0.02) probably_damaging(0.924) TCGA-AR-A2LE-01 1 240255809 240255809 G A FMN2 Missense_Mutation p.E134K 0.26 unknown(0) TCGA-AR-A2LE-01 1 243336043 243336043 C T CEP170 Missense_Mutation p.E558K 0.14 tolerated(0.23) possibly_damaging(0.63) TCGA-AR-A2LE-01 1 27087558 27087558 C G ARID1A Nonsense_Mutation p.S711* 0.38 TCGA-AR-A2LE-01 1 36820881 36820881 C G STK40 Missense_Mutation p.E166Q 0.27 tolerated(0.07) probably_damaging(0.993) TCGA-AR-A2LE-01 1 3740031 3740031 G C CEP104 Missense_Mutation p.F820L 0.37 tolerated(0.96) benign(0) TCGA-AR-A2LE-01 1 38018288 38018288 C T SNIP1 Silent p.K95K 0.39 TCGA-AR-A2LE-01 1 38281010 38281010 G A MTF1 Missense_Mutation p.S687L 0.31 tolerated_low_confidence(0.25) probably_damaging(0.966) TCGA-AR-A2LE-01 1 46179976 46179976 C G IPP Missense_Mutation p.G491A 0.43 deleterious(0) probably_damaging(0.98) TCGA-AR-A2LE-01 1 46180033 46180033 C G IPP Missense_Mutation p.G472A 0.39 tolerated(0.74) benign(0.008) TCGA-AR-A2LE-01 1 46782439 46782439 G C UQCRH 3'UTR 0.29 TCGA-AR-A2LE-01 1 57480804 57480804 G C DAB1 Nonsense_Mutation p.S399* 0.41 TCGA-AR-A2LE-01 1 8075312 8075312 G C ERRFI1 Intron 0.41 TCGA-AR-A2LE-01 1 901936 901936 C T PLEKHN1 Nonsense_Mutation p.Q9* 0.60 TCGA-AR-A2LE-01 1 92495765 92495765 C A EPHX4 Silent p.L43L 0.33 TCGA-AR-A2LE-01 20 32881939 32881939 G C AHCY Missense_Mutation p.I81M 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AR-A2LE-01 20 3680054 3680054 C T SIGLEC1 Silent p.V527V 0.31 TCGA-AR-A2LE-01 20 37353517 37353517 C G SLC32A1 Silent p.L50L 0.45 TCGA-AR-A2LE-01 20 3740775 3740775 G T C20orf27 5'UTR 0.19 TCGA-AR-A2LE-01 20 42157310 42157310 G A L3MBTL1 Silent p.K270K 0.26 TCGA-AR-A2LE-01 20 51872689 51872689 C T TSHZ2 Missense_Mutation p.H898Y 0.23 deleterious(0) probably_damaging(0.993) TCGA-AR-A2LE-01 21 35467660 35467660 C G SLC5A3 Missense_Mutation p.L55V 0.39 deleterious(0.01) probably_damaging(0.951) TCGA-AR-A2LE-01 21 40665954 40665954 G A BRWD1 Missense_Mutation p.S205L 0.42 deleterious(0) probably_damaging(0.985) TCGA-AR-A2LE-01 21 45993735 45993735 G A KRTAP10-4 Missense_Mutation p.E34K 0.42 deleterious(0.02) probably_damaging(0.98) TCGA-AR-A2LE-01 21 47821608 47821608 G C PCNT Missense_Mutation p.Q1645H 0.35 possibly_damaging(0.781) TCGA-AR-A2LE-01 22 16287624 16287624 C T POTEH Missense_Mutation p.D88N 0.16 tolerated_low_confidence(0.05) probably_damaging(0.995) TCGA-AR-A2LE-01 22 20977008 20977008 G A SMPD4P1 RNA 0.32 TCGA-AR-A2LE-01 22 24002184 24002184 G T GUSBP11 RNA 0.39 TCGA-AR-A2LE-01 22 30074208 30074208 G A NF2 Silent p.P490P 0.44 TCGA-AR-A2LE-01 22 36710252 36710252 C T MYH9 Missense_Mutation p.E498K 0.31 possibly_damaging(0.856) TCGA-AR-A2LE-01 22 37539630 37539630 G C IL2RB Missense_Mutation p.S45C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-AR-A2LE-01 2 102851456 102851456 C T IL1RL2 Missense_Mutation p.S466L 0.31 deleterious(0) possibly_damaging(0.472) TCGA-AR-A2LE-01 2 113940771 113940771 C T PSD4 Silent p.F246F 0.44 TCGA-AR-A2LE-01 2 121036308 121036308 G A RALB Missense_Mutation p.G23E 0.53 deleterious(0.05) possibly_damaging(0.81) TCGA-AR-A2LE-01 2 131130862 131130862 G A PTPN18 3'UTR 0.42 TCGA-AR-A2LE-01 2 166850813 166850813 C G SCN1A Missense_Mutation p.Q1565H 0.37 deleterious(0.02) probably_damaging(0.978) TCGA-AR-A2LE-01 2 178416741 178416741 C T TTC30B Missense_Mutation p.V251M 0.35 deleterious(0) possibly_damaging(0.818) TCGA-AR-A2LE-01 2 179260315 179260315 C T OSBPL6 3'UTR 0.40 TCGA-AR-A2LE-01 2 179425272 179425272 A - TTN Frame_Shift_Del p.N28529Kfs*9 0.22 TCGA-AR-A2LE-01 2 179495060 179495060 G C TTN Missense_Mutation p.S14730C 0.35 TCGA-AR-A2LE-01 2 196599888 196599888 G C SLC39A10 3'UTR 0.09 TCGA-AR-A2LE-01 2 197189706 197189706 C T HECW2 Missense_Mutation p.E247K 0.14 deleterious(0) probably_damaging(0.996) TCGA-AR-A2LE-01 2 20511271 20511271 C T PUM2 Missense_Mutation p.D168N 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AR-A2LE-01 2 219924996 219924996 C T IHH Missense_Mutation p.G65E 0.40 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 2 219925074 219925074 C G IHH Missense_Mutation p.R39P 0.50 deleterious(0.01) possibly_damaging(0.885) TCGA-AR-A2LE-01 2 220476372 220476372 C T STK11IP Silent p.L728L 0.53 TCGA-AR-A2LE-01 2 233271846 233271846 G A ALPPL2 Silent p.Q49Q 0.32 TCGA-AR-A2LE-01 2 241528870 241528870 G C CAPN10 Missense_Mutation p.K84N 0.32 deleterious(0) probably_damaging(0.965) TCGA-AR-A2LE-01 2 242063401 242063401 G A PASK Missense_Mutation p.S956F 0.27 deleterious(0) probably_damaging(0.95) TCGA-AR-A2LE-01 2 242122245 242122245 C T PPP1R7 3'UTR 0.26 TCGA-AR-A2LE-01 2 31621506 31621506 C T XDH Missense_Mutation p.M122I 0.33 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 2 32694469 32694469 C T BIRC6 Missense_Mutation p.S2045F 0.15 possibly_damaging(0.896) TCGA-AR-A2LE-01 2 32768600 32768600 G T BIRC6 Missense_Mutation p.G4195V 0.38 probably_damaging(0.983) TCGA-AR-A2LE-01 2 3381440 3381440 C T TSSC1 Silent p.V7V 0.33 TCGA-AR-A2LE-01 2 43779422 43779422 G C THADA Missense_Mutation p.L911V 0.34 deleterious(0) probably_damaging(0.998) TCGA-AR-A2LE-01 2 43971088 43971088 C T PLEKHH2 Missense_Mutation p.S1172F 0.29 deleterious(0.01) possibly_damaging(0.498) TCGA-AR-A2LE-01 2 54159138 54159138 C G PSME4 Missense_Mutation p.D384H 0.45 deleterious(0.01) benign(0.365) TCGA-AR-A2LE-01 2 61324843 61324843 C G KIAA1841 Silent p.L407L 0.28 TCGA-AR-A2LE-01 2 62067316 62067316 C T FAM161A Missense_Mutation p.D275N 0.30 deleterious(0) probably_damaging(0.944) TCGA-AR-A2LE-01 2 69708073 69708073 C G AAK1 Missense_Mutation p.E830Q 0.20 tolerated(0.07) possibly_damaging(0.891) TCGA-AR-A2LE-01 2 70377562 70377562 C G C2orf42 Missense_Mutation p.E551Q 0.37 deleterious(0.02) benign(0.062) TCGA-AR-A2LE-01 2 71305475 71305475 G C NAGK Missense_Mutation p.R337T 0.44 tolerated(0.17) benign(0.005) TCGA-AR-A2LE-01 2 96810080 96810080 G A DUSP2 Silent p.F181F 0.26 TCGA-AR-A2LE-01 3 101046516 101046516 G T SENP7 Missense_Mutation p.F1003L 0.37 deleterious(0) benign(0.246) TCGA-AR-A2LE-01 3 101576283 101576283 G A NFKBIZ Missense_Mutation p.D695N 0.29 tolerated(0.06) benign(0.344) TCGA-AR-A2LE-01 3 125257365 125257365 C T OSBPL11 Missense_Mutation p.D652N 0.34 tolerated(0.1) possibly_damaging(0.866) TCGA-AR-A2LE-01 3 127786445 127786445 C T SEC61A1 Missense_Mutation p.S386F 0.42 deleterious(0) possibly_damaging(0.79) TCGA-AR-A2LE-01 3 12849815 12849815 C G CAND2 Silent p.L158L 0.35 TCGA-AR-A2LE-01 3 141499536 141499536 C T GRK7 Silent p.G311G 0.31 TCGA-AR-A2LE-01 3 14174082 14174082 G A TMEM43 Silent p.T143T 0.38 TCGA-AR-A2LE-01 3 15643321 15643321 C T BTD 5'UTR 0.36 TCGA-AR-A2LE-01 3 185769839 185769839 C T ETV5 Missense_Mutation p.E431K 0.35 deleterious(0) probably_damaging(0.996) TCGA-AR-A2LE-01 3 33540163 33540163 C A CLASP2 Missense_Mutation p.G1502V 0.39 deleterious_low_confidence(0.03) benign(0.284) TCGA-AR-A2LE-01 3 39228389 39228389 C G XIRP1 Missense_Mutation p.D850H 0.47 deleterious(0) possibly_damaging(0.808) TCGA-AR-A2LE-01 3 44839448 44839448 G C KIF15 Missense_Mutation p.K366N 0.21 deleterious(0) probably_damaging(0.997) TCGA-AR-A2LE-01 3 44968333 44968333 C G ZDHHC3 Missense_Mutation p.E278Q 0.32 deleterious(0) probably_damaging(0.976) TCGA-AR-A2LE-01 3 49065176 49065176 G C IMPDH2 Silent p.L166L 0.42 TCGA-AR-A2LE-01 3 50326327 50326327 G A IFRD2 Silent p.V373V 0.37 TCGA-AR-A2LE-01 3 53321675 53321675 C T DCP1A Missense_Mutation p.D560N 0.28 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 3 57335775 57335775 C A DNAH12 Missense_Mutation p.L513F 0.13 deleterious(0) probably_damaging(0.978) TCGA-AR-A2LE-01 3 57356427 57356427 G C DNAH12 Missense_Mutation p.L255V 0.19 deleterious(0.03) benign(0.041) TCGA-AR-A2LE-01 3 63976462 63976462 G C ATXN7 Missense_Mutation p.D537H 0.23 deleterious(0) probably_damaging(1) TCGA-AR-A2LE-01 4 106157246 106157246 C T TET2 Missense_Mutation p.S716L 0.29 deleterious(0) probably_damaging(0.948) TCGA-AR-A2LE-01 4 110772990 110772990 C T LRIT3 Silent p.L149L 0.30 TCGA-AR-A2LE-01 4 110773101 110773101 C A LRIT3 Silent p.V186V 0.25 TCGA-AR-A2LE-01 4 120213506 120213506 G A USP53 Missense_Mutation p.E788K 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.735) TCGA-AR-A2LE-01 4 120221737 120221737 A C C4orf3 Missense_Mutation p.L118R 0.23 deleterious_low_confidence(0) unknown(0) TCGA-AR-A2LE-01 4 123178623 123178623 G A KIAA1109 Missense_Mutation p.D2198N 0.33 probably_damaging(0.999) TCGA-AR-A2LE-01 4 126411926 126411926 C A FAT4 Nonsense_Mutation p.S4650* 0.43 TCGA-AR-A2LE-01 4 129764141 129764141 C G JADE1 Missense_Mutation p.S29C 0.11 tolerated(0.06) possibly_damaging(0.843) TCGA-AR-A2LE-01 4 146563556 146563556 G A MMAA Missense_Mutation p.E161K 0.30 deleterious(0) probably_damaging(0.992) TCGA-AR-A2LE-01 4 151818935 151818935 G C LRBA Missense_Mutation p.L654V 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-AR-A2LE-01 4 153897510 153897510 C A FHDC1 Missense_Mutation p.P1023T 0.47 tolerated(0.12) benign(0.01) TCGA-AR-A2LE-01 4 155219212 155219212 G C DCHS2 Missense_Mutation p.S1630C 0.30 deleterious(0.03) benign(0.04) TCGA-AR-A2LE-01 4 156276303 156276303 C T MAP9 Missense_Mutation p.E434K 0.34 tolerated(0.1) possibly_damaging(0.906) TCGA-AR-A2LE-01 4 169108622 169108622 C G ANXA10 3'UTR 0.40 TCGA-AR-A2LE-01 4 170359303 170359303 C T NEK1 Missense_Mutation p.E899K 0.39 tolerated(0.1) benign(0.025) TCGA-AR-A2LE-01 4 672772 672772 G C MYL5 Missense_Mutation p.R46P 0.41 deleterious(0) possibly_damaging(0.767) TCGA-AR-A2LE-01 5 132086586 132086586 G A CCNI2 Missense_Mutation p.G224D 0.34 tolerated(0.08) benign(0.348) TCGA-AR-A2LE-01 5 133304255 133304255 C T C5orf15 Silent p.K7K 0.21 TCGA-AR-A2LE-01 5 140175048 140175048 C T PCDHA2 Missense_Mutation p.L167F 0.24 tolerated_low_confidence(0.06) benign(0.018) TCGA-AR-A2LE-01 5 140476760 140476760 G A PCDHB2 Missense_Mutation p.E796K 0.39 tolerated_low_confidence(0.35) benign(0.005) TCGA-AR-A2LE-01 5 140720105 140720105 G C PCDHGA2 Missense_Mutation p.E523Q 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-AR-A2LE-01 5 140731549 140731549 G A PCDHGB1 Silent p.V574V 0.44 TCGA-AR-A2LE-01 5 140754953 140754953 G T PCDHGA6 Nonsense_Mutation p.E435* 0.49 TCGA-AR-A2LE-01 5 149006711 149006711 G A ARHGEF37 Missense_Mutation p.V513M 0.29 deleterious(0) possibly_damaging(0.863) TCGA-AR-A2LE-01 5 37007574 37007574 C T NIPBL Nonsense_Mutation p.Q1413* 0.37 TCGA-AR-A2LE-01 5 41051159 41051159 C T MROH2B Missense_Mutation p.E422K 0.32 deleterious(0.04) benign(0.026) TCGA-AR-A2LE-01 5 43040166 43040166 A G ANXA2R 5'UTR 0.50 TCGA-AR-A2LE-01 5 45645500 45645500 C T HCN1 Silent p.V212V 0.30 TCGA-AR-A2LE-01 5 71756940 71756940 C T ZNF366 Missense_Mutation p.M128I 0.38 deleterious_low_confidence(0) benign(0.445) TCGA-AR-A2LE-01 6 132021713 132021713 G A OR2A4 Missense_Mutation p.H277Y 0.21 tolerated(1) benign(0.011) TCGA-AR-A2LE-01 6 147525812 147525812 C T STXBP5 Silent p.L48L 0.41 TCGA-AR-A2LE-01 6 151151893 151151893 C T PLEKHG1 Missense_Mutation p.P549L 0.16 tolerated(0.11) benign(0.273) TCGA-AR-A2LE-01 6 15524633 15524633 G A DTNBP1 Intron 0.31 TCGA-AR-A2LE-01 6 155451141 155451141 G A TIAM2 Missense_Mutation p.E262K 0.38 deleterious(0) probably_damaging(0.963) TCGA-AR-A2LE-01 6 158532343 158532343 G A SERAC1 3'UTR 0.32 TCGA-AR-A2LE-01 6 26027324 26027324 C G HIST1H4B Missense_Mutation p.E53Q 0.33 deleterious(0.02) possibly_damaging(0.451) TCGA-AR-A2LE-01 6 26598517 26598517 C T ABT1 Missense_Mutation p.H155Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LE-01 6 28121504 28121504 G A ZKSCAN8 Silent p.R482R 0.41 TCGA-AR-A2LE-01 6 28213380 28213380 G A ZKSCAN4 Silent p.V384V 0.36 TCGA-AR-A2LE-01 6 29231761 29231761 G C XXbac-BPG308J9.3 RNA 0.40 TCGA-AR-A2LE-01 6 30673173 30673173 C G MDC1 Missense_Mutation p.E1263Q 0.39 tolerated(0.09) benign(0.01) TCGA-AR-A2LE-01 6 31711932 31711932 G A MSH5 Intron 0.31 TCGA-AR-A2LE-01 6 35610571 35610571 C A FKBP5 Nonsense_Mutation p.E11* 0.33 TCGA-AR-A2LE-01 6 36652171 36652171 C G CDKN1A Nonsense_Mutation p.S98* 0.41 TCGA-AR-A2LE-01 6 42934116 42934116 G A PEX6 Nonsense_Mutation p.Q722* 0.28 TCGA-AR-A2LE-01 6 54025334 54025334 C T MLIP Silent p.L257L 0.37 TCGA-AR-A2LE-01 6 56473006 56473007 - T DST Intron 0.26 TCGA-AR-A2LE-01 6 62995938 62995938 C T KHDRBS2 5'UTR 0.50 TCGA-AR-A2LE-01 6 64286673 64286673 G A PTP4A1 5'UTR 0.21 TCGA-AR-A2LE-01 7 106829734 106829734 C T HBP1 Intron 0.32 TCGA-AR-A2LE-01 7 128415772 128415772 G A OPN1SW Nonsense_Mutation p.Q25* 0.35 TCGA-AR-A2LE-01 7 129592459 129592459 G C UBE2H 5'UTR 0.27 TCGA-AR-A2LE-01 7 133943091 133943091 G C LRGUK Missense_Mutation p.E761Q 0.15 tolerated(0.08) possibly_damaging(0.642) TCGA-AR-A2LE-01 7 133948633 133948633 C T LRGUK Missense_Mutation p.S795F 0.40 tolerated(0.19) benign(0.01) TCGA-AR-A2LE-01 7 139790690 139790690 C T KDM7A 3'UTR 0.50 TCGA-AR-A2LE-01 7 143043669 143043669 C T CLCN1 Intron 0.28 TCGA-AR-A2LE-01 7 154564564 154564564 G T DPP6 Nonsense_Mutation p.E350* 0.37 TCGA-AR-A2LE-01 7 22200137 22200137 G A RAPGEF5 Missense_Mutation p.H356Y 0.36 tolerated(0.3) probably_damaging(0.993) TCGA-AR-A2LE-01 7 33044955 33044955 G C FKBP9 Missense_Mutation p.E569Q 0.18 deleterious(0) probably_damaging(0.995) TCGA-AR-A2LE-01 7 72657350 72657350 G C GTF2IRD2P1 RNA 0.27 TCGA-AR-A2LE-01 7 803515 803515 A G HEATR2 Missense_Mutation p.I563V 0.22 tolerated(0.66) benign(0.001) TCGA-AR-A2LE-01 7 82585189 82585189 C G PCLO Missense_Mutation p.D1694H 0.36 unknown(0) TCGA-AR-A2LE-01 7 84628816 84628816 C G SEMA3D Missense_Mutation p.K758N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AR-A2LE-01 8 104053148 104053148 G A ATP6V1C1 Silent p.K28K 0.33 TCGA-AR-A2LE-01 8 145007362 145007362 C T PLEC Intron 0.24 TCGA-AR-A2LE-01 8 20036764 20036764 G C SLC18A1 Nonsense_Mutation p.S119* 0.58 TCGA-AR-A2LE-01 8 28967486 28967486 G C KIF13B Silent p.L1344L 0.59 TCGA-AR-A2LE-01 8 41476329 41476329 G A AGPAT6 Missense_Mutation p.E394K 0.65 tolerated(0.33) benign(0.001) TCGA-AR-A2LE-01 8 72969194 72969194 C T TRPA1 Silent p.Q384Q 0.06 TCGA-AR-A2LE-01 8 77763444 77763444 C A ZFHX4 Silent p.L1429L 0.27 TCGA-AR-A2LE-01 8 77763688 77763688 G C ZFHX4 Missense_Mutation p.D1511H 0.34 probably_damaging(0.934) TCGA-AR-A2LE-01 8 77768299 77768299 G C ZFHX4 Missense_Mutation p.D3048H 0.11 probably_damaging(0.982) TCGA-AR-A2LE-01 8 82606549 82606549 C T SLC10A5 Missense_Mutation p.G220E 0.26 deleterious(0.04) possibly_damaging(0.682) TCGA-AR-A2LE-01 8 94767236 94767236 C T TMEM67 Missense_Mutation p.R32C 0.47 tolerated_low_confidence(0.13) benign(0.17) TCGA-AR-A2LE-01 8 95399225 95399225 G A RAD54B Nonsense_Mutation p.R658* 0.32 TCGA-AR-A2LE-01 8 98288845 98288845 G A TSPYL5 Nonsense_Mutation p.Q410* 0.36 TCGA-AR-A2LE-01 9 101891278 101891278 G A TGFBR1 Missense_Mutation p.R80Q 0.37 tolerated(0.48) benign(0.194) TCGA-AR-A2LE-01 9 102595017 102595017 A G NR4A3 Missense_Mutation p.N344S 0.36 tolerated(0.21) benign(0.321) TCGA-AR-A2LE-01 9 110081065 110081065 G A RAD23B Missense_Mutation p.E196K 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-AR-A2LE-01 9 123292327 123292327 C A CDK5RAP2 Nonsense_Mutation p.E252* 0.46 TCGA-AR-A2LE-01 9 128061197 128061197 G A GAPVD1 5'UTR 0.35 TCGA-AR-A2LE-01 9 129595948 129595948 G C ZBTB43 Missense_Mutation p.R387T 0.32 deleterious(0.01) probably_damaging(1) TCGA-AR-A2LE-01 9 133901845 133901845 G A LAMC3 Missense_Mutation p.E183K 0.48 deleterious(0.03) possibly_damaging(0.858) TCGA-AR-A2LE-01 9 136294981 136294981 C T ADAMTS13 Intron 0.47 TCGA-AR-A2LE-01 9 139753465 139753465 G A MAMDC4 Missense_Mutation p.E989K 0.28 tolerated(0.08) probably_damaging(0.997) TCGA-AR-A2LE-01 9 18706935 18706935 G A ADAMTSL1 Missense_Mutation p.E589K 0.37 tolerated(0.42) benign(0.08) TCGA-AR-A2LE-01 9 21166061 21166061 C G IFNA21 Missense_Mutation p.R184T 0.37 deleterious(0.01) benign(0.106) TCGA-AR-A2LE-01 9 35090233 35090233 G A PIGO Nonsense_Mutation p.Q967* 0.27 TCGA-AR-A2LE-01 9 35749242 35749242 C T RGP1 5'Flank 0.39 TCGA-AR-A2LE-01 9 37002728 37002728 G A PAX5 Missense_Mutation p.S174L 0.25 tolerated(0.28) possibly_damaging(0.595) TCGA-AR-A2LE-01 9 38411522 38411522 C T IGFBPL1 Missense_Mutation p.E238K 0.35 tolerated(0.08) possibly_damaging(0.673) TCGA-AR-A2LE-01 9 43625433 43625433 C T SPATA31A6 Missense_Mutation p.R1085K 0.29 tolerated(1) benign(0.004) TCGA-AR-A2LE-01 9 4713067 4713067 C T AK3 Missense_Mutation p.G198E 0.16 deleterious(0) probably_damaging(0.988) TCGA-AR-A2LE-01 9 75775762 75775762 C T ANXA1 Missense_Mutation p.S143L 0.36 deleterious(0) possibly_damaging(0.89) TCGA-AR-A2LE-01 9 79323854 79323854 G A PRUNE2 Silent p.L1112L 0.31 TCGA-AR-A2LE-01 9 95068088 95068088 C T NOL8 Silent p.T950T 0.31 TCGA-AR-A2LE-01 9 96439994 96439994 G A PHF2 3'UTR 0.35 TCGA-AR-A2LE-01 9 97401448 97401448 C G FBP1 Missense_Mutation p.V49L 0.35 deleterious(0.02) benign(0.314) TCGA-AR-A2LE-01 9 99107596 99107596 C G SLC35D2 Missense_Mutation p.Q192H 0.32 deleterious(0) probably_damaging(0.986) TCGA-AR-A2LE-01 X 100387249 100387249 C T CENPI Missense_Mutation p.S453L 0.31 deleterious(0.04) benign(0.166) TCGA-AR-A2LE-01 X 100881194 100881194 C T ARMCX3 3'UTR 0.36 TCGA-AR-A2LE-01 X 112058767 112058767 C T AMOT Missense_Mutation p.G404E 0.26 unknown(0) TCGA-AR-A2LE-01 X 118586864 118586864 G C SLC25A43 Missense_Mutation p.E288Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-AR-A2LE-01 X 130218597 130218597 C T ARHGAP36 Intron 0.35 TCGA-AR-A2LE-01 X 134125278 134125278 C T SMIM10 Silent p.L51L 0.36 TCGA-AR-A2LE-01 X 134991082 134991082 G C SAGE1 Missense_Mutation p.D501H 0.33 tolerated(0.14) probably_damaging(0.979) TCGA-AR-A2LE-01 X 151899872 151899872 C G MAGEA12 Missense_Mutation p.R310T 0.44 deleterious(0) possibly_damaging(0.771) TCGA-AR-A2LE-01 X 153281522 153281522 C G IRAK1 Missense_Mutation p.Q421H 0.43 deleterious(0.02) benign(0.243) TCGA-AR-A2LE-01 X 21871530 21871530 C G MBTPS2 Silent p.L193L 0.43 TCGA-AR-A2LE-01 X 23802069 23802069 G A SAT1 Intron 0.38 TCGA-AR-A2LE-01 X 30873285 30873285 C T TAB3 Missense_Mutation p.G166E 0.44 deleterious(0.01) possibly_damaging(0.716) TCGA-AR-A2LE-01 X 34149897 34149897 C T FAM47A Missense_Mutation p.E167K 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-AR-A2LE-01 X 41007789 41007789 C T USP9X Silent p.L529L 0.32 TCGA-AR-A2LE-01 X 63445041 63445041 C T ASB12 Missense_Mutation p.E164K 0.26 deleterious(0.01) possibly_damaging(0.63) TCGA-AR-A2LE-01 X 76938592 76938592 G C ATRX Missense_Mutation p.S719C 0.27 benign(0.02) TCGA-AR-A2LE-01 X 96213049 96213049 C T DIAPH2 Missense_Mutation p.P613S 0.36 tolerated(0.33) unknown(0) TCGA-AR-A2LE-01 X 99663206 99663206 C T PCDH19 Silent p.P130P 0.16 TCGA-AR-A2LE-01 X 99840058 99840058 C G TNMD Missense_Mutation p.L15V 0.41 tolerated(0.13) benign(0.013) TCGA-AR-A2LH-01 10 75391782 75391782 T A MYOZ1 Missense_Mutation p.N269I 0.12 deleterious(0) probably_damaging(0.973) TCGA-AR-A2LH-01 11 3691096 3691096 C T CHRNA10 Missense_Mutation p.R46K 0.11 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LH-01 11 59856261 59856261 G A MS4A2 Missense_Mutation p.R8K 0.07 deleterious(0) probably_damaging(0.994) TCGA-AR-A2LH-01 11 62297365 62297365 C G AHNAK Silent p.L1508L 0.05 TCGA-AR-A2LH-01 11 8496364 8496364 C T STK33 Missense_Mutation p.S30N 0.18 tolerated_low_confidence(1) benign(0.081) TCGA-AR-A2LH-01 12 111886005 111886005 G A SH2B3 Missense_Mutation p.E543K 0.05 tolerated(0.06) possibly_damaging(0.888) TCGA-AR-A2LH-01 12 123186941 123186941 G A HCAR2 Missense_Mutation p.S297F 0.04 deleterious(0) probably_damaging(0.997) TCGA-AR-A2LH-01 12 123200395 123200395 G A HCAR3 Missense_Mutation p.S297F 0.08 deleterious(0) probably_damaging(0.998) TCGA-AR-A2LH-01 12 64536182 64536182 G A SRGAP1 Silent p.V996V 0.14 TCGA-AR-A2LH-01 15 24922101 24922101 G C NPAP1 Missense_Mutation p.E363Q 0.15 tolerated(0.24) possibly_damaging(0.896) TCGA-AR-A2LH-01 15 31339418 31339418 C T TRPM1 Missense_Mutation p.D571N 0.20 deleterious(0.05) probably_damaging(0.957) TCGA-AR-A2LH-01 15 34553129 34553129 C T SLC12A6 Missense_Mutation p.E137K 0.11 deleterious(0.01) benign(0.129) TCGA-AR-A2LH-01 15 65766607 65766607 G C DPP8 Missense_Mutation p.I508M 0.12 deleterious(0.03) possibly_damaging(0.73) TCGA-AR-A2LH-01 15 74627590 74627590 G A CCDC33 Intron 0.19 TCGA-AR-A2LH-01 16 84183928 84183928 G A DNAAF1 Silent p.T111T 0.12 TCGA-AR-A2LH-01 17 10366488 10366488 G A MYH4 Nonsense_Mutation p.R275* 0.14 TCGA-AR-A2LH-01 17 39316500 39316500 G A KRTAP4-4 Silent p.P148P 0.12 TCGA-AR-A2LH-01 17 7225069 7225069 G A NEURL4 Missense_Mutation p.S970F 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-AR-A2LH-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.10 tolerated(0.13) possibly_damaging(0.631) TCGA-AR-A2LH-01 18 56601798 56601798 C A ZNF532 Missense_Mutation p.T827N 0.10 deleterious(0.03) benign(0.002) TCGA-AR-A2LH-01 18 71816219 71816219 G C TIMM21 Missense_Mutation p.G59A 0.12 tolerated(0.23) benign(0.006) TCGA-AR-A2LH-01 19 14705348 14705348 A T CLEC17A Missense_Mutation p.R99S 0.10 tolerated(0.06) possibly_damaging(0.895) TCGA-AR-A2LH-01 19 18321876 18321876 C G PDE4C Missense_Mutation p.E668Q 0.09 tolerated_low_confidence(0.14) possibly_damaging(0.867) TCGA-AR-A2LH-01 19 18726935 18726935 C T TMEM59L Nonsense_Mutation p.Q187* 0.06 TCGA-AR-A2LH-01 19 336103 336103 G T MIER2 Missense_Mutation p.P27Q 0.16 deleterious(0) probably_damaging(0.94) TCGA-AR-A2LH-01 19 39299483 39299483 C A LGALS4 Missense_Mutation p.Q80H 0.04 tolerated(0.07) benign(0.063) TCGA-AR-A2LH-01 19 51961383 51961383 C T SIGLEC8 Missense_Mutation p.E87K 0.04 tolerated(1) benign(0.01) TCGA-AR-A2LH-01 19 9767319 9767319 G A ZNF562 Silent p.F84F 0.05 TCGA-AR-A2LH-01 1 1454309 1454309 C G ATAD3A Silent p.L199L 0.08 TCGA-AR-A2LH-01 1 145826963 145826963 C T GPR89A 5'UTR 0.11 TCGA-AR-A2LH-01 1 158725034 158725034 G A OR6K6 Silent p.L143L 0.12 TCGA-AR-A2LH-01 1 176905409 176905409 G A ASTN1 Silent p.I825I 0.08 TCGA-AR-A2LH-01 1 182026630 182026630 C A ZNF648 Missense_Mutation p.K172N 0.12 tolerated(0.23) benign(0.016) TCGA-AR-A2LH-01 1 183196738 183196738 C A LAMC2 Missense_Mutation p.S458R 0.05 tolerated(0.22) possibly_damaging(0.835) TCGA-AR-A2LH-01 1 216256881 216256881 C G USH2A Missense_Mutation p.E1739Q 0.09 probably_damaging(0.954) TCGA-AR-A2LH-01 1 57347208 57347208 G C C8A Missense_Mutation p.W185C 0.07 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LH-01 1 6206435 6206435 C T CHD5 Missense_Mutation p.D547N 0.18 tolerated(0.13) possibly_damaging(0.754) TCGA-AR-A2LH-01 20 18526630 18526630 G C SEC23B Missense_Mutation p.D566H 0.10 deleterious(0) probably_damaging(0.981) TCGA-AR-A2LH-01 20 29976878 29976878 G A DEFB119 Nonsense_Mutation p.Q73* 0.06 TCGA-AR-A2LH-01 20 3781624 3781625 TT - CDC25B Frame_Shift_Del p.F197Cfs*43 0.15 TCGA-AR-A2LH-01 20 57829419 57829419 G T ZNF831 Missense_Mutation p.R1552I 0.16 deleterious(0.04) benign(0.35) TCGA-AR-A2LH-01 21 33734236 33734236 T A URB1 Missense_Mutation p.D535V 0.05 deleterious(0.04) benign(0.002) TCGA-AR-A2LH-01 21 36206722 36206722 G A RUNX1 Nonsense_Mutation p.Q264* 0.07 TCGA-AR-A2LH-01 22 22277806 22277806 C T PPM1F Missense_Mutation p.D342N 0.18 deleterious(0) probably_damaging(0.998) TCGA-AR-A2LH-01 22 36960687 36960687 C G CACNG2 Missense_Mutation p.S228T 0.11 tolerated(0.11) possibly_damaging(0.878) TCGA-AR-A2LH-01 2 137988755 137988755 C T THSD7B Missense_Mutation p.S622L 0.08 deleterious(0.02) possibly_damaging(0.765) TCGA-AR-A2LH-01 2 152426658 152426658 C G NEB Missense_Mutation p.W5789C 0.08 probably_damaging(1) TCGA-AR-A2LH-01 2 179500199 179500199 C T TTN Missense_Mutation p.G13951E 0.12 TCGA-AR-A2LH-01 2 216913991 216913991 C T PECR Missense_Mutation p.E237K 0.07 deleterious(0.01) probably_damaging(0.944) TCGA-AR-A2LH-01 2 242524040 242524040 T C THAP4 Missense_Mutation p.Y572C 0.07 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LH-01 2 27804200 27804200 G A C2orf16 Silent p.Q1587Q 0.11 TCGA-AR-A2LH-01 2 90211784 90211784 C T IGKV3D-11 Silent p.L15L 0.06 TCGA-AR-A2LH-01 3 160804296 160804296 G C B3GALNT1 Missense_Mutation p.L83V 0.09 deleterious(0) probably_damaging(0.994) TCGA-AR-A2LH-01 3 182872117 182872117 G A LAMP3 Nonsense_Mutation p.Q38* 0.07 TCGA-AR-A2LH-01 3 72428458 72428458 C G RYBP Missense_Mutation p.E182D 0.08 tolerated(0.21) benign(0.008) TCGA-AR-A2LH-01 5 140476634 140476634 G A PCDHB2 Missense_Mutation p.E754K 0.10 deleterious_low_confidence(0.02) benign(0.052) TCGA-AR-A2LH-01 5 140774056 140774056 C T PCDHGA8 Missense_Mutation p.A559V 0.07 tolerated_low_confidence(0.32) benign(0.038) TCGA-AR-A2LH-01 5 149206381 149206381 C T PPARGC1B Missense_Mutation p.S133F 0.16 deleterious(0.05) probably_damaging(0.931) TCGA-AR-A2LH-01 5 178032346 178032346 C T CLK4 Missense_Mutation p.R391Q 0.06 deleterious(0.03) benign(0.193) TCGA-AR-A2LH-01 5 59284456 59284456 C T PDE4D Missense_Mutation p.R44H 0.05 tolerated_low_confidence(0.13) possibly_damaging(0.747) TCGA-AR-A2LH-01 6 160163119 160163119 G A WTAP Splice_Site p.X29_splice 0.07 TCGA-AR-A2LH-01 6 57048818 57048818 C T BAG2 Nonsense_Mutation p.Q156* 0.11 TCGA-AR-A2LH-01 6 90097118 90097118 G A RRAGD Nonsense_Mutation p.Q114* 0.12 TCGA-AR-A2LH-01 7 150699363 150699363 G A NOS3 Missense_Mutation p.G575R 0.09 deleterious(0) probably_damaging(0.99) TCGA-AR-A2LH-01 7 18067282 18067282 C T PRPS1L1 Missense_Mutation p.V42M 0.05 deleterious(0) probably_damaging(0.971) TCGA-AR-A2LH-01 7 2962378 2962378 C T CARD11 Missense_Mutation p.R720Q 0.14 tolerated(0.23) benign(0.11) TCGA-AR-A2LH-01 8 8239109 8239109 C T SGK223 Missense_Mutation p.R50K 0.07 probably_damaging(0.952) TCGA-AR-A2LH-01 9 104171809 104171809 C G ZNF189 Missense_Mutation p.Q587E 0.07 deleterious(0.01) benign(0.425) TCGA-AR-A2LH-01 9 113234581 113234581 A T SVEP1 Silent p.A874A 0.07 TCGA-AR-A2LH-01 9 138523295 138523295 G A GLT6D1 Missense_Mutation p.S34L 0.09 deleterious(0.02) benign(0.34) TCGA-AR-A2LH-01 9 32631706 32631706 T - TAF1L Frame_Shift_Del p.H1291Lfs*2 0.11 TCGA-AR-A2LH-01 9 5770261 5770261 C G KIAA1432 Nonsense_Mutation p.S1200* 0.12 TCGA-AR-A2LH-01 X 133700448 133700448 G C PLAC1 Missense_Mutation p.Q89E 0.12 tolerated(0.74) benign(0.003) TCGA-AR-A2LK-01 10 127452095 127452095 T C EDRF1 3'UTR 0.27 TCGA-AR-A2LK-01 10 46122444 46122444 C G ZFAND4 Missense_Mutation p.G276A 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-AR-A2LK-01 11 126174159 126174159 A T RP11-712L6.5 Translation_Start_Site p.M1? 0.88 unknown(0) TCGA-AR-A2LK-01 11 89075271 89075271 A G NOX4 Silent p.T436T 0.73 TCGA-AR-A2LK-01 11 92533075 92533075 C A FAT3 Missense_Mutation p.A2299E 0.07 benign(0.297) TCGA-AR-A2LK-01 12 52994991 52994991 G A KRT72 Silent p.A82A 0.13 TCGA-AR-A2LK-01 12 57396764 57396764 C T ZBTB39 Silent p.S646S 0.11 TCGA-AR-A2LK-01 14 24546220 24546220 C T CPNE6 Missense_Mutation p.T433M 0.44 tolerated(0.1) benign(0.041) TCGA-AR-A2LK-01 15 35044895 35044895 C T GJD2 Silent p.K250K 0.36 TCGA-AR-A2LK-01 15 78921471 78921471 G A CHRNB4 Silent p.P392P 0.43 TCGA-AR-A2LK-01 16 21716591 21716591 G T OTOA Missense_Mutation p.G361V 0.42 tolerated(0.08) probably_damaging(0.961) TCGA-AR-A2LK-01 16 29827779 29827779 C G PAGR1 5'UTR 0.27 TCGA-AR-A2LK-01 16 68863622 68863635 TGCACCAACCCTCA - CDH1 Frame_Shift_Del p.A788Efs*14 0.78 TCGA-AR-A2LK-01 17 62019025 62019025 G A SCN4A Silent p.D1539D 0.33 TCGA-AR-A2LK-01 17 66899538 66899538 G T ABCA8 Missense_Mutation p.T794K 0.48 tolerated(0.07) benign(0.019) TCGA-AR-A2LK-01 18 211389 211389 C T USP14 3'UTR 0.60 TCGA-AR-A2LK-01 18 29036959 29036959 A C DSG3 Missense_Mutation p.K30Q 0.32 deleterious(0.01) possibly_damaging(0.546) TCGA-AR-A2LK-01 18 59166446 59166446 G A CDH20 Missense_Mutation p.G92R 0.10 deleterious(0.02) probably_damaging(1) TCGA-AR-A2LK-01 19 18174806 18174806 G T IL12RB1 Missense_Mutation p.P500T 0.09 deleterious(0) probably_damaging(0.983) TCGA-AR-A2LK-01 19 40419909 40419909 C T FCGBP Missense_Mutation p.G1029R 0.52 probably_damaging(0.997) TCGA-AR-A2LK-01 1 113244320 113244320 C T RHOC Missense_Mutation p.E142K 0.53 deleterious(0.04) benign(0.099) TCGA-AR-A2LK-01 1 222717378 222717378 C T HHIPL2 Missense_Mutation p.E159K 0.51 tolerated(0.6) benign(0.029) TCGA-AR-A2LK-01 1 231474015 231474015 G A SPRTN 5'UTR 0.53 TCGA-AR-A2LK-01 20 57570590 57570590 A G CTSZ 3'UTR 0.73 TCGA-AR-A2LK-01 20 61867655 61867655 G T BIRC7 Missense_Mutation p.E69D 0.69 tolerated(0.26) benign(0.003) TCGA-AR-A2LK-01 22 37482346 37482346 G A TMPRSS6 Missense_Mutation p.S326F 0.60 deleterious(0.04) possibly_damaging(0.896) TCGA-AR-A2LK-01 2 162879282 162879282 T C DPP4 Missense_Mutation p.T351A 0.38 deleterious(0.02) benign(0.032) TCGA-AR-A2LK-01 2 74742786 74742786 C T TLX2 Missense_Mutation p.R143C 0.20 deleterious(0) probably_damaging(0.995) TCGA-AR-A2LK-01 2 9634772 9634772 G A ADAM17 Silent p.D636D 0.40 TCGA-AR-A2LK-01 3 119434580 119434580 G A MAATS1 Silent p.T224T 0.83 TCGA-AR-A2LK-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.83 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A2LK-01 3 74535758 74535758 A C CNTN3 Missense_Mutation p.I69M 0.14 deleterious(0.01) probably_damaging(0.925) TCGA-AR-A2LK-01 3 97806718 97806718 G T OR5AC2 Missense_Mutation p.K234N 0.34 deleterious(0.04) benign(0.139) TCGA-AR-A2LK-01 3 9860632 9860632 C T TTLL3 Intron 0.80 TCGA-AR-A2LK-01 4 71021794 71021794 G T C4orf40 Missense_Mutation p.E25D 0.37 deleterious(0.04) benign(0.329) TCGA-AR-A2LK-01 5 154172349 154172349 G A LARP1 Silent p.K167K 0.41 TCGA-AR-A2LK-01 6 137477933 137477933 T - IL22RA2 Frame_Shift_Del p.I86Ffs*50 0.18 TCGA-AR-A2LK-01 6 152668216 152668216 G A SYNE1 Missense_Mutation p.A4019V 0.18 probably_damaging(0.998) TCGA-AR-A2LK-01 6 30919693 30919693 G A DPCR1 Missense_Mutation p.R1151K 0.24 tolerated(1) benign(0.033) TCGA-AR-A2LK-01 7 150937727 150937728 - GC SMARCD3 Intron 0.82 TCGA-AR-A2LK-01 7 48092459 48092459 T A C7orf57 Silent p.G256G 0.23 TCGA-AR-A2LK-01 7 99654807 99654807 C T ZSCAN21 Nonsense_Mutation p.R60* 0.27 TCGA-AR-A2LK-01 8 134232986 134232986 G A WISP1 Missense_Mutation p.R171Q 0.27 tolerated(0.37) benign(0.06) TCGA-AR-A2LK-01 8 144811162 144811162 C T FAM83H Missense_Mutation p.A238T 0.68 tolerated(0.22) possibly_damaging(0.511) TCGA-AR-A2LK-01 8 21769814 21769814 G A DOK2 Missense_Mutation p.R91C 0.73 deleterious(0) probably_damaging(0.967) TCGA-AR-A2LK-01 9 102730740 102730740 C T STX17 Silent p.L232L 0.39 TCGA-AR-A2LK-01 9 135073544 135073544 C T NTNG2 Silent p.D135D 0.12 TCGA-AR-A2LK-01 X 128975839 128975839 C T ZDHHC9 Missense_Mutation p.R28H 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-AR-A2LK-01 X 136649099 136649099 C T ZIC3 Silent p.N83N 0.61 TCGA-AR-A2LK-01 X 22291800 22291800 T A ZNF645 Missense_Mutation p.F231Y 0.16 tolerated(0.1) benign(0.136) TCGA-AR-A2LK-01 X 48458037 48458037 C T WDR13 Missense_Mutation p.T152M 0.31 tolerated(0.09) benign(0.075) TCGA-AR-A2LL-01 10 16975259 16975259 G A CUBN Missense_Mutation p.T1984M 0.36 deleterious(0) probably_damaging(0.996) TCGA-AR-A2LL-01 10 89692886 89692886 T A PTEN Missense_Mutation p.C124S 0.49 deleterious(0) probably_damaging(0.998) TCGA-AR-A2LL-01 11 3723746 3723746 C A NUP98 Missense_Mutation p.Q1153H 0.35 tolerated(0.08) possibly_damaging(0.898) TCGA-AR-A2LL-01 11 56086657 56086657 G A OR8K3 Missense_Mutation p.R292Q 0.10 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-AR-A2LL-01 13 19748238 19748238 C T TUBA3C Missense_Mutation p.R373Q 0.38 deleterious_low_confidence(0.02) benign(0.032) TCGA-AR-A2LL-01 14 100847946 100847946 T C WDR25 Missense_Mutation p.Y229H 0.22 tolerated(0.15) benign(0.004) TCGA-AR-A2LL-01 14 22932028 22932028 G A TRDC Missense_Mutation p.V36M 0.33 tolerated(0.08) benign(0.276) TCGA-AR-A2LL-01 14 57949847 57949847 G T C14orf105 Missense_Mutation p.P110Q 0.27 deleterious(0) probably_damaging(1) TCGA-AR-A2LL-01 16 31282377 31282377 T C ITGAM Missense_Mutation p.M177T 0.36 deleterious(0.02) probably_damaging(1) TCGA-AR-A2LL-01 16 68844244 68844244 G A CDH1 Missense_Mutation p.G278R 0.41 deleterious(0.01) possibly_damaging(0.868) TCGA-AR-A2LL-01 16 722367 722367 C T RHOT2 Missense_Mutation p.L437F 0.52 deleterious(0) probably_damaging(0.956) TCGA-AR-A2LL-01 17 1370806 1370806 G T MYO1C Missense_Mutation p.N1011K 0.15 tolerated(1) benign(0.049) TCGA-AR-A2LL-01 17 67029972 67029972 C A ABCA9 Missense_Mutation p.D391Y 0.23 tolerated(0.15) benign(0.151) TCGA-AR-A2LL-01 18 8784388 8784388 G A SOGA2 Silent p.S426S 0.17 TCGA-AR-A2LL-01 19 1978327 1978327 T C CSNK1G2 Missense_Mutation p.Y71H 0.23 tolerated(0.61) benign(0.139) TCGA-AR-A2LL-01 19 7997777 7997777 G A TIMM44 Silent p.N270N 0.26 TCGA-AR-A2LL-01 1 152785001 152785001 C T LCE1B Missense_Mutation p.P27S 0.03 deleterious_low_confidence(0) unknown(0) TCGA-AR-A2LL-01 1 160121712 160121712 C A ATP1A4 5'UTR 0.73 TCGA-AR-A2LL-01 1 160654790 160654790 C T CD48 Missense_Mutation p.S91N 0.37 tolerated(0.48) benign(0.026) TCGA-AR-A2LL-01 1 16464648 16464648 C T EPHA2 Missense_Mutation p.V338M 0.29 tolerated(0.13) benign(0.007) TCGA-AR-A2LL-01 20 1460499 1460499 G C SIRPB2 Missense_Mutation p.I99M 0.20 deleterious(0.05) possibly_damaging(0.823) TCGA-AR-A2LL-01 22 39067068 39067068 C - CBY1 Intron 0.30 TCGA-AR-A2LL-01 2 171509542 171509542 C T MYO3B Missense_Mutation p.P1313S 0.33 tolerated_low_confidence(0.27) benign(0.118) TCGA-AR-A2LL-01 2 173362764 173362764 T C ITGA6 Missense_Mutation p.I1017T 0.35 deleterious(0) possibly_damaging(0.831) TCGA-AR-A2LL-01 2 173891911 173891911 G A RAPGEF4 Missense_Mutation p.V828I 0.24 tolerated(0.28) benign(0.036) TCGA-AR-A2LL-01 3 126070862 126070862 C T KLF15 Missense_Mutation p.G302S 0.46 tolerated(0.26) benign(0.029) TCGA-AR-A2LL-01 4 10515108 10515108 G T CLNK Missense_Mutation p.P296T 0.49 deleterious(0.03) possibly_damaging(0.835) TCGA-AR-A2LL-01 4 89338639 89338639 G A HERC6 Missense_Mutation p.A541T 0.16 tolerated(0.13) benign(0.038) TCGA-AR-A2LL-01 5 130825308 130825308 A C RAPGEF6 Missense_Mutation p.F591V 0.39 tolerated(0.28) benign(0.021) TCGA-AR-A2LL-01 5 149505027 149505027 C T PDGFRB Silent p.P596P 0.10 TCGA-AR-A2LL-01 6 167587423 167587423 G A TCP10L2 Silent p.A109A 0.20 TCGA-AR-A2LL-01 6 79577396 79577396 C T IRAK1BP1 Missense_Mutation p.P35S 0.47 deleterious(0.04) benign(0.026) TCGA-AR-A2LL-01 7 120969710 120969711 - TT WNT16 Frame_Shift_Ins p.R62Sfs*2 0.23 TCGA-AR-A2LL-01 9 108380351 108380351 C T FKTN Missense_Mutation p.P341L 0.19 tolerated(0.08) benign(0.004) TCGA-AR-A2LL-01 9 85905548 85905548 C G FRMD3 Missense_Mutation p.E389Q 0.41 tolerated(0.24) benign(0.396) TCGA-AR-A2LL-01 X 105011476 105011476 C T IL1RAPL2 Missense_Mutation p.T628M 0.35 deleterious_low_confidence(0.02) benign(0.416) TCGA-AR-A2LL-01 X 131214290 131214290 G A FRMD7 Nonsense_Mutation p.R304* 0.05 TCGA-AR-A2LL-01 X 16170432 16170432 C T GRPR Silent p.F273F 0.35 TCGA-AR-A2LL-01 X 53592066 53592066 C T HUWE1 Missense_Mutation p.G2281E 0.05 probably_damaging(0.963) TCGA-AR-A2LM-01 10 106924114 106924114 G A SORCS3 Missense_Mutation p.D596N 0.29 deleterious(0.01) possibly_damaging(0.84) TCGA-AR-A2LM-01 10 132961403 132961403 G C TCERG1L Missense_Mutation p.P339R 0.27 deleterious(0) possibly_damaging(0.877) TCGA-AR-A2LM-01 17 39155749 39155749 A G KRTAP3-2 3'UTR 0.35 TCGA-AR-A2LM-01 18 33647353 33647353 A G RPRD1A Silent p.S5S 0.32 TCGA-AR-A2LM-01 19 36205635 36205635 G A ZBTB32 Missense_Mutation p.G36E 0.39 tolerated(0.24) probably_damaging(0.986) TCGA-AR-A2LM-01 1 211749347 211749347 C G SLC30A1 Missense_Mutation p.A303P 0.15 tolerated(0.31) benign(0.005) TCGA-AR-A2LM-01 1 22021710 22021710 T C USP48 Missense_Mutation p.N911S 0.25 tolerated(0.18) benign(0.065) TCGA-AR-A2LM-01 1 244735950 244735950 C A C1orf101 Missense_Mutation p.T609N 0.15 deleterious(0) benign(0.345) TCGA-AR-A2LM-01 20 13753198 13753198 G C ESF1 Missense_Mutation p.L405V 0.21 deleterious(0) benign(0.133) TCGA-AR-A2LM-01 21 16339800 16339801 - G NRIP1 Frame_Shift_Ins p.R239Kfs*14 0.22 TCGA-AR-A2LM-01 22 44967346 44967346 G A LINC00207 RNA 0.30 TCGA-AR-A2LM-01 2 64862947 64862947 A T SERTAD2 3'UTR 0.29 TCGA-AR-A2LM-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.24 deleterious(0.01) probably_damaging(1) TCGA-AR-A2LM-01 5 127594957 127594957 T C FBN2 3'UTR 0.38 TCGA-AR-A2LM-01 5 140347026 140347026 G T PCDHAC2 Silent p.L225L 0.41 TCGA-AR-A2LM-01 5 170145803 170145803 C T KCNIP1 Missense_Mutation p.R46W 0.26 deleterious(0) probably_damaging(1) TCGA-AR-A2LM-01 8 69046352 69046352 C T PREX2 Silent p.V1275V 0.28 TCGA-AR-A2LM-01 X 79698447 79698447 G T FAM46D Missense_Mutation p.V137F 0.36 deleterious(0.03) probably_damaging(0.956) TCGA-AR-A2LN-01 10 15255350 15255351 - T FAM171A1 Frame_Shift_Ins p.M746Nfs*3 0.24 TCGA-AR-A2LN-01 12 1702885 1702885 G A FBXL14 Silent p.I116I 0.27 TCGA-AR-A2LN-01 12 66704201 66704201 G C HELB Missense_Mutation p.R498T 0.05 tolerated(0.14) benign(0.021) TCGA-AR-A2LN-01 12 68716974 68716974 G C MDM1 Nonsense_Mutation p.S227* 0.05 TCGA-AR-A2LN-01 12 76462707 76462707 C T NAP1L1 Missense_Mutation p.E29K 0.04 tolerated(0.26) benign(0.332) TCGA-AR-A2LN-01 12 8197502 8197502 C T FOXJ2 Silent p.F255F 0.15 TCGA-AR-A2LN-01 14 31763188 31763188 C T RP11-596D21.1 Intron 0.18 TCGA-AR-A2LN-01 15 76763568 76763568 C T SCAPER Silent p.L1021L 0.13 TCGA-AR-A2LN-01 16 20380840 20380840 G A PDILT Missense_Mutation p.R364C 0.22 deleterious(0.03) possibly_damaging(0.72) TCGA-AR-A2LN-01 16 28909594 28909594 G A ATP2A1 Missense_Mutation p.R529Q 0.29 tolerated(0.22) possibly_damaging(0.906) TCGA-AR-A2LN-01 16 68835780 68835781 - C CDH1 Frame_Shift_Ins p.P127Afs*41 0.28 TCGA-AR-A2LN-01 17 38066075 38066075 C G GSDMB Silent p.L170L 0.16 TCGA-AR-A2LN-01 17 38066086 38066086 C T GSDMB Missense_Mutation p.E167K 0.16 tolerated(0.85) benign(0.011) TCGA-AR-A2LN-01 18 60241584 60241584 C T ZCCHC2 Missense_Mutation p.A757V 0.26 tolerated(0.21) probably_damaging(0.993) TCGA-AR-A2LN-01 19 11352398 11352398 G C C19orf80 3'UTR 0.09 TCGA-AR-A2LN-01 19 19303035 19303035 T C MEF2BNB 5'UTR 0.23 TCGA-AR-A2LN-01 19 7963570 7963570 C G LRRC8E Missense_Mutation p.L55V 0.15 tolerated(0.06) probably_damaging(0.987) TCGA-AR-A2LN-01 1 149885276 149885276 G A SV2A Silent p.D39D 0.21 TCGA-AR-A2LN-01 1 19246221 19246221 A G IFFO2 Missense_Mutation p.I258T 0.14 deleterious(0) benign(0.237) TCGA-AR-A2LN-01 1 193121549 193121549 A T CDC73 Missense_Mutation p.H316L 0.15 deleterious(0.01) possibly_damaging(0.864) TCGA-AR-A2LN-01 1 222734812 222734812 C A TAF1A Missense_Mutation p.W378C 0.15 deleterious(0) probably_damaging(1) TCGA-AR-A2LN-01 1 227300567 227300567 C T CDC42BPA Silent p.L565L 0.15 TCGA-AR-A2LN-01 1 29041281 29041281 A T GMEB1 Missense_Mutation p.D573V 0.28 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-AR-A2LN-01 1 75038972 75038972 G A C1orf173 Missense_Mutation p.P808S 0.20 tolerated(0.07) possibly_damaging(0.857) TCGA-AR-A2LN-01 20 62202143 62202143 C T HELZ2 Silent p.T119T 0.19 TCGA-AR-A2LN-01 21 11039250 11039250 C T BAGE2 RNA 0.03 TCGA-AR-A2LN-01 2 168105004 168105004 C T XIRP2 Missense_Mutation p.P2368S 0.13 benign(0.291) TCGA-AR-A2LN-01 2 179419393 179419393 C T TTN Missense_Mutation p.D29561N 0.24 TCGA-AR-A2LN-01 2 208633332 208633332 G A FZD5 Silent p.I44I 0.15 TCGA-AR-A2LN-01 2 75107455 75107455 C T HK2 Silent p.L443L 0.32 TCGA-AR-A2LN-01 3 128996422 128996422 A C COPG1 3'UTR 0.31 TCGA-AR-A2LN-01 3 134911580 134911580 G A EPHB1 Missense_Mutation p.R682H 0.23 tolerated(0.46) benign(0.021) TCGA-AR-A2LN-01 3 170802027 170802027 T C TNIK Missense_Mutation p.N1029S 0.20 tolerated(0.08) probably_damaging(0.983) TCGA-AR-A2LN-01 3 33416839 33416839 C T FBXL2 Silent p.L239L 0.20 TCGA-AR-A2LN-01 3 48629139 48629139 C T COL7A1 Missense_Mutation p.E492K 0.13 unknown(0) TCGA-AR-A2LN-01 3 49049964 49049964 C T WDR6 Missense_Mutation p.R363W 0.05 deleterious(0.02) possibly_damaging(0.599) TCGA-AR-A2LN-01 4 149357960 149357960 C T NR3C2 Missense_Mutation p.R18Q 0.26 tolerated_low_confidence(0.14) benign(0.004) TCGA-AR-A2LN-01 4 170400599 170400599 C T NEK1 Missense_Mutation p.M698I 0.20 tolerated(0.52) benign(0.001) TCGA-AR-A2LN-01 4 6865788 6865788 G A KIAA0232 Missense_Mutation p.E1227K 0.19 tolerated_low_confidence(0.31) benign(0.011) TCGA-AR-A2LN-01 5 139884447 139884447 C T ANKHD1 Nonsense_Mutation p.Q1016* 0.12 TCGA-AR-A2LN-01 5 141694196 141694196 C T SPRY4 Missense_Mutation p.E183K 0.11 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LN-01 6 109863350 109863350 C T AK9 Missense_Mutation p.E1084K 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-AR-A2LN-01 6 138768229 138768229 C T NHSL1 Nonsense_Mutation p.W195* 0.22 TCGA-AR-A2LN-01 6 155750167 155750167 G T NOX3 Silent p.P302P 0.17 TCGA-AR-A2LN-01 6 42980990 42980990 C T MEA1 Missense_Mutation p.E56K 0.15 tolerated(0.08) benign(0.038) TCGA-AR-A2LN-01 7 139416554 139416554 C T HIPK2 Missense_Mutation p.V94M 0.21 deleterious(0.01) probably_damaging(0.96) TCGA-AR-A2LN-01 7 6639592 6639592 C T C7orf26 Missense_Mutation p.T238I 0.21 deleterious(0) possibly_damaging(0.702) TCGA-AR-A2LN-01 8 100479779 100479779 A G VPS13B Missense_Mutation p.T1195A 0.19 tolerated(0.28) benign(0.058) TCGA-AR-A2LN-01 8 124359522 124359522 G A ATAD2 Silent p.I674I 0.05 TCGA-AR-A2LN-01 9 123880638 123880638 G A CNTRL Silent p.G490G 0.16 TCGA-AR-A2LN-01 9 18908545 18908545 G A ADAMTSL1 Silent p.%3D 0.22 TCGA-AR-A2LN-01 9 33675364 33675365 - A PTENP1 RNA 0.33 TCGA-AR-A2LN-01 9 43625192 43625192 T A SPATA31A6 Missense_Mutation p.Q1165H 0.03 tolerated(0.21) benign(0.006) TCGA-AR-A2LN-01 X 106228454 106228454 C T MORC4 Silent p.E182E 0.24 TCGA-AR-A2LN-01 X 114426627 114426627 G C RBMXL3 Missense_Mutation p.G875R 0.15 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-AR-A2LN-01 X 135126834 135126834 C T SLC9A6 Missense_Mutation p.S686F 0.05 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-AR-A2LN-01 X 91873605 91873605 C A PCDH11X Nonsense_Mutation p.S1237* 0.21 TCGA-AR-A2LO-01 11 124764141 124764141 C A ROBO4 Missense_Mutation p.G425V 0.23 deleterious(0) probably_damaging(0.992) TCGA-AR-A2LO-01 11 2434365 2434365 G A TRPM5 Missense_Mutation p.R699W 0.31 tolerated(0.06) benign(0.004) TCGA-AR-A2LO-01 19 57176464 57176464 G C ZNF835 Missense_Mutation p.P35A 0.08 tolerated(0.51) benign(0.003) TCGA-AR-A2LO-01 1 144994672 144994672 G A PDE4DIP Silent p.F20F 0.07 TCGA-AR-A2LO-01 1 237897046 237897046 T A RYR2 Missense_Mutation p.I3694N 0.14 possibly_damaging(0.836) TCGA-AR-A2LO-01 20 16359706 16359706 G C KIF16B Missense_Mutation p.R981G 0.21 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-AR-A2LO-01 2 242757547 242757547 C T NEU4 Missense_Mutation p.R223C 0.20 deleterious(0.02) possibly_damaging(0.886) TCGA-AR-A2LO-01 2 27320515 27320515 G T KHK Missense_Mutation p.V188L 0.16 tolerated(0.09) benign(0.022) TCGA-AR-A2LO-01 3 134266281 134266281 T G CEP63 Missense_Mutation p.L345R 0.19 tolerated(0.4) benign(0.028) TCGA-AR-A2LO-01 3 178936017 178936017 A T PIK3CA Missense_Mutation p.D520V 0.10 tolerated(0.16) benign(0.049) TCGA-AR-A2LO-01 3 37821390 37821390 C G ITGA9 Intron 0.14 TCGA-AR-A2LO-01 7 158823431 158823431 G A VIPR2 Missense_Mutation p.S398F 0.13 tolerated(0.68) benign(0.032) TCGA-AR-A2LO-01 8 53588958 53588958 G T RB1CC1 Silent p.S181S 0.14 TCGA-AR-A2LO-01 9 137622088 137622088 A T COL5A1 Missense_Mutation p.T311S 0.35 possibly_damaging(0.554) TCGA-AR-A2LO-01 X 109441602 109441602 A T AMMECR1 3'UTR 0.11 TCGA-AR-A2LO-01 X 152960007 152960007 C T SLC6A8 Silent p.D505D 0.11 TCGA-AR-A2LO-01 X 57620700 57620700 C T ZXDB Missense_Mutation p.S740L 0.28 deleterious(0) possibly_damaging(0.449) TCGA-AR-A2LQ-01 11 17793279 17793279 A G KCNC1 Missense_Mutation p.E213G 0.06 deleterious(0.02) probably_damaging(0.976) TCGA-AR-A2LQ-01 17 20916175 20916175 C A USP22 Silent p.G304G 0.09 TCGA-AR-A2LQ-01 1 152284383 152284383 G A FLG Silent p.A993A 0.06 TCGA-AR-A2LQ-01 1 203311563 203311563 C A FMOD Missense_Mutation p.V347L 0.09 tolerated(0.3) possibly_damaging(0.527) TCGA-AR-A2LQ-01 1 214811293 214811293 A G CENPF Missense_Mutation p.N511D 0.11 benign(0.023) TCGA-AR-A2LQ-01 20 2945750 2945750 C T PTPRA Missense_Mutation p.T106M 0.09 deleterious_low_confidence(0) possibly_damaging(0.475) TCGA-AR-A2LQ-01 22 19121812 19121812 G A DGCR14 Missense_Mutation p.A443V 0.10 tolerated(0.11) benign(0.035) TCGA-AR-A2LQ-01 3 155303968 155303968 G A PLCH1 Silent p.T150T 0.06 TCGA-AR-A2LQ-01 4 69204039 69204039 T C YTHDC1 Missense_Mutation p.Y31C 0.11 tolerated_low_confidence(0.26) unknown(0) TCGA-AR-A2LQ-01 5 140432770 140432770 C T PCDHB1 Missense_Mutation p.P572L 0.08 deleterious(0.04) possibly_damaging(0.804) TCGA-AR-A2LQ-01 5 153796410 153796410 A G GALNT10 Missense_Mutation p.M564V 0.08 tolerated(0.15) benign(0.002) TCGA-AR-A2LQ-01 6 151054925 151054925 A C PLEKHG1 Silent p.S36S 0.08 TCGA-AR-A2LQ-01 6 93982095 93982095 C T EPHA7 Missense_Mutation p.R457Q 0.08 tolerated(0.12) benign(0.129) TCGA-AR-A2LR-01 10 112364030 112364030 C A SMC3 Missense_Mutation p.D1208E 0.12 deleterious(0.01) benign(0.032) TCGA-AR-A2LR-01 10 124457832 124457833 - T C10orf120 Frame_Shift_Ins p.I142Nfs*14 0.55 TCGA-AR-A2LR-01 10 1284297 1284297 G T ADARB2 Missense_Mutation p.H420N 0.46 tolerated(0.07) possibly_damaging(0.651) TCGA-AR-A2LR-01 11 46804907 46804907 C T CKAP5 Missense_Mutation p.M722I 0.30 tolerated(0.17) benign(0.001) TCGA-AR-A2LR-01 11 5443794 5443794 G A OR51Q1 Missense_Mutation p.V122I 0.28 deleterious(0.02) benign(0.001) TCGA-AR-A2LR-01 11 71146439 71146439 C A DHCR7 Silent p.L470L 0.29 TCGA-AR-A2LR-01 12 115112047 115112047 C T TBX3 Missense_Mutation p.A565T 1.00 tolerated(0.21) probably_damaging(0.998) TCGA-AR-A2LR-01 12 125834062 125834062 C A TMEM132B Silent p.P39P 0.37 TCGA-AR-A2LR-01 12 22697164 22697164 G - C2CD5 Intron 0.30 TCGA-AR-A2LR-01 12 2800273 2800273 G C CACNA1C Missense_Mutation p.G2157R 0.41 tolerated_low_confidence(0.24) benign(0.002) TCGA-AR-A2LR-01 12 9723411 9723411 G A RP11-726G1.1 RNA 0.19 TCGA-AR-A2LR-01 13 21417184 21417184 C T XPO4 Missense_Mutation p.E193K 0.46 tolerated(0.76) benign(0.005) TCGA-AR-A2LR-01 14 106805627 106805627 G C IGHV4-31 Missense_Mutation p.F6L 0.27 tolerated_low_confidence(0.96) possibly_damaging(0.606) TCGA-AR-A2LR-01 15 23889634 23889634 C T MAGEL2 Missense_Mutation p.A483T 0.71 tolerated(0.63) benign(0.007) TCGA-AR-A2LR-01 15 75652054 75652054 G C MAN2C1 Missense_Mutation p.P619A 0.24 tolerated(0.5) benign(0.036) TCGA-AR-A2LR-01 16 20565132 20565132 G A ACSM2B Missense_Mutation p.S236L 0.34 tolerated(0.12) possibly_damaging(0.734) TCGA-AR-A2LR-01 16 30733941 30733941 C - SRCAP Frame_Shift_Del p.H1256Mfs*48 0.55 TCGA-AR-A2LR-01 17 48156481 48156481 G T ITGA3 Silent p.L814L 0.89 TCGA-AR-A2LR-01 17 6554834 6554834 G C MED31 Silent p.V5V 0.59 TCGA-AR-A2LR-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.71 TCGA-AR-A2LR-01 17 79104955 79104955 G T AATK Silent p.G80G 0.38 TCGA-AR-A2LR-01 17 79803835 79803835 G C P4HB Missense_Mutation p.D363E 0.41 deleterious(0.02) benign(0.004) TCGA-AR-A2LR-01 19 2191091 2191091 C A DOT1L Nonsense_Mutation p.Y115* 0.69 TCGA-AR-A2LR-01 19 46087903 46087903 A G OPA3 Silent p.Y40Y 0.27 TCGA-AR-A2LR-01 19 4818200 4818207 ATGCCTCT - TICAM1 Frame_Shift_Del p.A63Gfs*40 0.50 TCGA-AR-A2LR-01 19 7598741 7598741 C T MCOLN1 3'UTR 0.22 TCGA-AR-A2LR-01 19 9638983 9638983 G A ZNF426 3'UTR 0.39 TCGA-AR-A2LR-01 1 11106966 11106966 G A MASP2 Silent p.C72C 0.56 TCGA-AR-A2LR-01 1 17752144 17752144 G A RCC2 Missense_Mutation p.P139L 0.33 deleterious(0) benign(0.089) TCGA-AR-A2LR-01 1 200143150 200143150 G A NR5A2 Missense_Mutation p.A480T 0.27 deleterious(0.05) probably_damaging(0.98) TCGA-AR-A2LR-01 1 213046085 213046085 G A FLVCR1 Missense_Mutation p.E317K 0.18 tolerated(0.14) benign(0.027) TCGA-AR-A2LR-01 1 225328447 225328447 A G DNAH14 Missense_Mutation p.Y1394C 0.20 possibly_damaging(0.481) TCGA-AR-A2LR-01 1 28477350 28477350 C G PTAFR Missense_Mutation p.M61I 0.22 tolerated(0.69) benign(0.002) TCGA-AR-A2LR-01 1 33149992 33149992 G T RBBP4 3'UTR 0.29 TCGA-AR-A2LR-01 1 93671144 93671144 T G CCDC18 Missense_Mutation p.C345W 0.34 deleterious(0) probably_damaging(0.967) TCGA-AR-A2LR-01 20 30115323 30115323 G A HM13 Missense_Mutation p.D74N 0.71 deleterious(0) possibly_damaging(0.611) TCGA-AR-A2LR-01 20 45140726 45140726 A G ZNF334 Missense_Mutation p.F6L 0.12 tolerated(0.66) benign(0.002) TCGA-AR-A2LR-01 20 61598185 61598185 C T SLC17A9 Intron 0.31 TCGA-AR-A2LR-01 22 20458076 20458076 C T RIMBP3 Missense_Mutation p.V1076I 0.19 tolerated(1) benign(0.003) TCGA-AR-A2LR-01 22 39024855 39024855 A C FAM227A Missense_Mutation p.F196C 0.31 deleterious(0) probably_damaging(0.999) TCGA-AR-A2LR-01 22 39996592 39996592 T G CACNA1I Missense_Mutation p.I139S 0.35 deleterious(0) benign(0.201) TCGA-AR-A2LR-01 2 109380159 109380159 C T RANBP2 Missense_Mutation p.P1055L 0.33 deleterious(0.01) benign(0.004) TCGA-AR-A2LR-01 2 109380160 109380160 C A RANBP2 Silent p.P1055P 0.29 TCGA-AR-A2LR-01 2 113343586 113343586 G A CHCHD5 Missense_Mutation p.G13D 0.36 tolerated(0.3) benign(0.004) TCGA-AR-A2LR-01 2 166514344 166514344 C T CSRNP3 Silent p.Y74Y 0.21 TCGA-AR-A2LR-01 2 202014451 202014451 T A CFLAR Intron 0.34 TCGA-AR-A2LR-01 2 220029949 220029949 C T SLC23A3 Missense_Mutation p.G378E 0.60 deleterious(0) probably_damaging(1) TCGA-AR-A2LR-01 2 220428132 220428132 G A OBSL1 Silent p.G875G 0.39 TCGA-AR-A2LR-01 2 88396186 88396186 C A SMYD1 Missense_Mutation p.N257K 0.30 tolerated(0.21) benign(0.024) TCGA-AR-A2LR-01 2 89292101 89292101 G T IGKV1-8 Missense_Mutation p.Q58K 0.30 deleterious(0.03) benign(0.308) TCGA-AR-A2LR-01 3 113164162 113164162 C T SPICE1 Missense_Mutation p.V854I 0.15 tolerated(0.67) benign(0.014) TCGA-AR-A2LR-01 3 150128829 150128829 C G TSC22D2 Silent p.G564G 0.31 TCGA-AR-A2LR-01 3 48802461 48802461 C T PRKAR2A Silent p.K283K 0.33 TCGA-AR-A2LR-01 3 49829204 49829204 A C CDHR4 Silent p.G742G 0.28 TCGA-AR-A2LR-01 4 103556107 103556107 C T MANBA Silent p.E751E 0.33 TCGA-AR-A2LR-01 4 122828634 122828634 C T TRPC3 Silent p.A627A 0.22 TCGA-AR-A2LR-01 4 88035901 88035901 A G AFF1 Missense_Mutation p.Y639C 0.33 tolerated(0.13) unknown(0) TCGA-AR-A2LR-01 5 14358322 14358322 G T TRIO Silent p.L694L 0.40 TCGA-AR-A2LR-01 5 96244775 96244775 A G ERAP2 Missense_Mutation p.H708R 0.38 tolerated(0.62) benign(0.004) TCGA-AR-A2LR-01 6 102266342 102266342 T A GRIK2 Missense_Mutation p.I434N 0.20 deleterious(0) possibly_damaging(0.474) TCGA-AR-A2LR-01 7 141631601 141631601 G A CLEC5A Missense_Mutation p.A124V 0.25 tolerated(0.19) benign(0.035) TCGA-AR-A2LR-01 7 154876019 154876030 TCCCCTTCTTTC - HTR5A In_Frame_Del p.P300_L303del 0.59 TCGA-AR-A2LR-01 7 51095731 51095731 G A COBL Missense_Mutation p.P1021L 0.77 tolerated(0.26) benign(0.008) TCGA-AR-A2LR-01 7 5330800 5330800 C T SLC29A4 Missense_Mutation p.A116V 0.31 deleterious(0) possibly_damaging(0.899) TCGA-AR-A2LR-01 7 55211097 55211097 G A EGFR Missense_Mutation p.E114K 0.30 deleterious(0.04) benign(0.016) TCGA-AR-A2LR-01 7 89906575 89906575 A T C7orf63 Missense_Mutation p.Y361F 0.18 tolerated(0.15) possibly_damaging(0.533) TCGA-AR-A2LR-01 8 110984916 110984916 G T KCNV1 Missense_Mutation p.P188T 0.38 tolerated(0.4) benign(0.006) TCGA-AR-A2LR-01 8 120431531 120431531 T C NOV Silent p.T241T 0.05 TCGA-AR-A2LR-01 8 124268203 124268203 A C ZHX1 5'UTR 0.08 TCGA-AR-A2LR-01 8 22880477 22880477 C A TNFRSF10B Missense_Mutation p.D344Y 0.67 tolerated(0.12) possibly_damaging(0.453) TCGA-AR-A2LR-01 8 51363130 51363130 C A SNTG1 Missense_Mutation p.L98I 0.29 deleterious(0.03) possibly_damaging(0.593) TCGA-AR-A2LR-01 8 53586673 53586675 TCA GG RB1CC1 Frame_Shift_Del p.D245Lfs*11 0.27 TCGA-AR-A2LR-01 9 115408031 115408031 C T KIAA1958 Missense_Mutation p.R425W 0.22 deleterious(0.02) benign(0.061) TCGA-AR-A2LR-01 9 139390623 139390623 G A NOTCH1 Missense_Mutation p.S2523L 0.70 deleterious(0) probably_damaging(0.987) TCGA-AR-A2LR-01 X 129053383 129053383 C T UTP14A Nonsense_Mutation p.R224* 0.31 TCGA-AR-A2LR-01 X 2761383 2761383 C G GYG2 Missense_Mutation p.S77C 0.59 deleterious(0) probably_damaging(0.992) TCGA-AR-A2LR-01 X 48921458 48921458 C T CCDC120 Missense_Mutation p.R84W 0.44 deleterious(0) probably_damaging(0.998) TCGA-AR-A5QM-01 11 18955397 18955397 A T MRGPRX1 Missense_Mutation p.I312N 0.21 deleterious(0.03) benign(0) TCGA-AR-A5QM-01 11 44296903 44296903 C T ALX4 Missense_Mutation p.V258M 0.15 deleterious(0) possibly_damaging(0.898) TCGA-AR-A5QM-01 12 112947390 112947390 C T PTPN11 3'UTR 0.20 TCGA-AR-A5QM-01 12 69245124 69245124 G T CPM 3'UTR 0.17 TCGA-AR-A5QM-01 15 90771234 90771234 A C SEMA4B Missense_Mutation p.N625H 0.14 tolerated(0.13) benign(0.119) TCGA-AR-A5QM-01 15 97328267 97328267 C T SPATA8 Nonsense_Mutation p.R80* 0.37 TCGA-AR-A5QM-01 16 2312306 2312306 C T RNPS1 Missense_Mutation p.E217K 0.10 deleterious(0.03) possibly_damaging(0.849) TCGA-AR-A5QM-01 16 23706081 23706081 C T ERN2 Missense_Mutation p.E738K 0.19 deleterious(0) probably_damaging(0.995) TCGA-AR-A5QM-01 16 27709761 27709761 C T KIAA0556 Silent p.N351N 0.35 TCGA-AR-A5QM-01 16 30005907 30005907 C T HIRIP3 Missense_Mutation p.V187I 0.07 deleterious(0) benign(0.046) TCGA-AR-A5QM-01 16 613320 613320 G A C16orf11 Missense_Mutation p.R9H 0.12 tolerated(0.06) benign(0.059) TCGA-AR-A5QM-01 16 68835629 68835629 C T CDH1 Nonsense_Mutation p.R74* 0.36 TCGA-AR-A5QM-01 16 740055 740055 C A WDR24 5'UTR 0.17 TCGA-AR-A5QM-01 17 32961833 32961833 C A TMEM132E Missense_Mutation p.S478R 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-AR-A5QM-01 17 38643348 38643348 G A TNS4 Missense_Mutation p.P410S 0.22 tolerated(0.57) benign(0.011) TCGA-AR-A5QM-01 17 42328557 42328557 C T SLC4A1 Silent p.P875P 0.10 TCGA-AR-A5QM-01 18 9221991 9221992 - A ANKRD12 Nonsense_Mutation p.Y313* 0.21 TCGA-AR-A5QM-01 19 22940675 22940675 C A ZNF99 Missense_Mutation p.C679F 0.18 deleterious(0) probably_damaging(1) TCGA-AR-A5QM-01 19 38903584 38903584 G T RASGRP4 Missense_Mutation p.P508T 0.18 tolerated(0.6) possibly_damaging(0.756) TCGA-AR-A5QM-01 19 39421950 39421950 C A MRPS12 Missense_Mutation p.L6I 0.07 deleterious(0.02) benign(0.154) TCGA-AR-A5QM-01 1 34102111 34102111 G A CSMD2 Silent p.N1566N 0.09 TCGA-AR-A5QM-01 21 15889213 15889213 C T SAMSN1 Silent p.K161K 0.07 TCGA-AR-A5QM-01 21 40568403 40568403 T C BRWD1 Intron 0.12 TCGA-AR-A5QM-01 2 138425431 138425431 G A THSD7B Missense_Mutation p.C1583Y 0.21 deleterious(0) unknown(0) TCGA-AR-A5QM-01 2 14775297 14775297 G A FAM84A 3'UTR 0.34 TCGA-AR-A5QM-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.25 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A5QM-01 3 20053620 20053620 A G PP2D1 5'UTR 0.35 TCGA-AR-A5QM-01 4 71895243 71895243 T G DCK 3'UTR 0.15 TCGA-AR-A5QM-01 5 11022878 11022879 - A CTNND2 Intron 0.20 TCGA-AR-A5QM-01 6 50683206 50683206 C A TFAP2D Silent p.A139A 0.14 TCGA-AR-A5QM-01 7 44736635 44736635 G A OGDH Missense_Mutation p.G675S 0.30 deleterious(0) probably_damaging(1) TCGA-AR-A5QM-01 8 101146139 101146139 C T FBXO43 Missense_Mutation p.C673Y 0.47 deleterious(0.04) probably_damaging(0.985) TCGA-AR-A5QM-01 8 30704914 30704914 G T TEX15 Missense_Mutation p.N540K 0.32 deleterious(0.04) benign(0.096) TCGA-AR-A5QM-01 9 97365757 97365757 G A FBP1 Missense_Mutation p.P308L 0.07 deleterious(0) probably_damaging(0.998) TCGA-AR-A5QM-01 X 129370196 129370196 G T ZNF280C Missense_Mutation p.H255N 0.23 deleterious(0) probably_damaging(1) TCGA-AR-A5QM-01 X 140985322 140985322 T A MAGEC3 Intron 0.16 TCGA-AR-A5QM-01 X 144905276 144905276 G A SLITRK2 Missense_Mutation p.G445R 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A5QM-01 X 148685667 148685667 G T TMEM185A Missense_Mutation p.H165N 0.15 tolerated(0.51) benign(0.001) TCGA-AR-A5QN-01 10 81680252 81680252 A G MBL1P RNA 0.14 TCGA-AR-A5QN-01 12 124179775 124179776 AC - TCTN2 Frame_Shift_Del p.Q416Efs*10 0.10 TCGA-AR-A5QN-01 12 133780523 133780523 C T ZNF268 Missense_Mutation p.P751S 0.21 deleterious(0.02) probably_damaging(1) TCGA-AR-A5QN-01 12 53069280 53069280 G A KRT1 Silent p.G544G 0.15 TCGA-AR-A5QN-01 13 84452664 84452664 A T SLITRK1 3'UTR 0.33 TCGA-AR-A5QN-01 14 39649964 39649965 AA - PNN Frame_Shift_Del p.K351Rfs*14 0.14 TCGA-AR-A5QN-01 14 92413633 92413633 C T FBLN5 5'UTR 0.27 TCGA-AR-A5QN-01 15 52416711 52416711 C T GNB5 Missense_Mutation p.G379R 0.14 deleterious(0) probably_damaging(1) TCGA-AR-A5QN-01 15 67073407 67073407 G A SMAD6 Missense_Mutation p.R342H 0.19 deleterious(0) probably_damaging(1) TCGA-AR-A5QN-01 15 80478622 80478622 C T FAH 3'UTR 0.35 TCGA-AR-A5QN-01 17 43483435 43483435 C T ARHGAP27 5'UTR 0.23 TCGA-AR-A5QN-01 17 80040424 80040424 G A FASN Silent p.G1966G 0.15 TCGA-AR-A5QN-01 19 1785557 1785557 G A ATP8B3 Missense_Mutation p.R1102C 0.28 tolerated(0.17) benign(0.008) TCGA-AR-A5QN-01 19 31769937 31769937 C T TSHZ3 Nonsense_Mutation p.W254* 0.15 TCGA-AR-A5QN-01 19 43687592 43687592 T C PSG5 Intron 0.22 TCGA-AR-A5QN-01 19 51981843 51981843 G T CEACAM18 Nonsense_Mutation p.E44* 0.26 TCGA-AR-A5QN-01 19 54848688 54848689 - G LILRA4 Frame_Shift_Ins p.L312Pfs*11 0.19 TCGA-AR-A5QN-01 1 10221207 10221207 A G UBE4B Missense_Mutation p.K1021E 0.20 deleterious(0.01) possibly_damaging(0.723) TCGA-AR-A5QN-01 1 150307463 150307463 G A PRPF3 Silent p.G262G 0.20 TCGA-AR-A5QN-01 1 154961242 154961242 G A FLAD1 Missense_Mutation p.R345H 0.18 tolerated(0.41) benign(0.002) TCGA-AR-A5QN-01 1 157490260 157490260 C T FCRL5 Missense_Mutation p.G865R 0.21 deleterious(0.02) possibly_damaging(0.866) TCGA-AR-A5QN-01 1 171526403 171526403 G A PRRC2C Missense_Mutation p.E1716K 0.11 unknown(0) TCGA-AR-A5QN-01 1 174245071 174245071 A G RABGAP1L Missense_Mutation p.K385R 0.12 tolerated(0.22) possibly_damaging(0.534) TCGA-AR-A5QN-01 1 196757919 196757919 T C CFHR3 Intron 0.14 TCGA-AR-A5QN-01 1 207194821 207194829 CATCCACTG - C1orf116 3'UTR 0.42 TCGA-AR-A5QN-01 1 228345773 228345773 C T GJC2 Missense_Mutation p.A105V 0.42 tolerated(0.43) probably_damaging(0.94) TCGA-AR-A5QN-01 20 31787199 31787199 C T BPIFA4P RNA 0.28 TCGA-AR-A5QN-01 2 219897223 219897223 G A CCDC108 Missense_Mutation p.T205M 0.17 deleterious(0.03) possibly_damaging(0.674) TCGA-AR-A5QN-01 2 80874927 80874927 G A CTNNA2 Missense_Mutation p.R883Q 0.26 deleterious(0.03) possibly_damaging(0.852) TCGA-AR-A5QN-01 3 141011671 141011671 C - ACPL2 Frame_Shift_Del p.I357Sfs*47 0.18 TCGA-AR-A5QN-01 3 183529238 183529238 C T YEATS2 3'UTR 0.13 TCGA-AR-A5QN-01 3 186501401 186501401 T A EIF4A2 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.01) benign(0.042) TCGA-AR-A5QN-01 3 41281617 41281620 TAAT - CTNNB1 3'UTR 0.29 TCGA-AR-A5QN-01 5 128983473 128983473 G A ADAMTS19 Missense_Mutation p.E624K 0.14 deleterious(0.03) benign(0.04) TCGA-AR-A5QN-01 5 176958509 176958509 G A FAM193B Intron 0.36 TCGA-AR-A5QN-01 5 6449081 6449081 C T UBE2QL1 Silent p.F25F 0.39 TCGA-AR-A5QN-01 6 166923827 166923827 G T RPS6KA2 Nonsense_Mutation p.S114* 0.22 TCGA-AR-A5QN-01 6 21597724 21597724 C T SOX4 3'UTR 0.24 TCGA-AR-A5QN-01 6 26376867 26376867 T C BTN3A2 3'UTR 0.21 TCGA-AR-A5QN-01 6 46797126 46797126 C T MEP1A Missense_Mutation p.S321L 0.22 tolerated(0.07) benign(0.021) TCGA-AR-A5QN-01 7 36447401 36447401 G A ANLN Missense_Mutation p.G311E 0.31 tolerated(1) benign(0.405) TCGA-AR-A5QN-01 7 99702881 99702881 G A AP4M1 Missense_Mutation p.R249Q 0.20 tolerated(0.14) probably_damaging(0.99) TCGA-AR-A5QN-01 8 144804412 144804412 C A MAPK15 Missense_Mutation p.H542Q 0.11 tolerated_low_confidence(0.4) benign(0.068) TCGA-AR-A5QN-01 8 42295010 42295010 G A SLC20A2 Silent p.D340D 0.29 TCGA-AR-A5QN-01 8 56737254 56737254 G A TGS1 Missense_Mutation p.E852K 0.24 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AR-A5QN-01 8 86178919 86178919 G A CA13 Missense_Mutation p.G146E 0.14 deleterious(0) possibly_damaging(0.859) TCGA-AR-A5QN-01 9 139265795 139265795 G A CARD9 Silent p.R101R 0.16 TCGA-AR-A5QN-01 9 16552753 16552753 C T BNC2 Silent p.K148K 0.25 TCGA-AR-A5QN-01 9 21802640 21802640 C T MTAP 5'UTR 0.24 TCGA-AR-A5QN-01 X 102755747 102755747 G T RAB40A 5'UTR 0.24 TCGA-AR-A5QN-01 X 109696711 109696711 G A RGAG1 Missense_Mutation p.A956T 0.23 tolerated(0.49) benign(0.084) TCGA-AR-A5QN-01 X 118717397 118717397 C T UBE2A 3'UTR 0.26 TCGA-AR-A5QN-01 X 148076677 148076679 TTG - AFF2 3'UTR 0.21 TCGA-AR-A5QN-01 X 154194831 154194831 C T F8 Missense_Mutation p.D381N 0.17 tolerated(0.2) benign(0.184) TCGA-AR-A5QN-01 X 43626803 43626803 G T MAOB Silent p.G491G 0.32 TCGA-AR-A5QN-01 X 47498441 47498441 C T ELK1 Silent p.P169P 0.29 TCGA-AR-A5QP-01 10 69881788 69881788 G A MYPN Missense_Mutation p.S198N 0.08 tolerated(0.23) benign(0.075) TCGA-AR-A5QP-01 10 97371025 97371025 C T ALDH18A1 Missense_Mutation p.V700I 0.09 tolerated(0.56) benign(0.001) TCGA-AR-A5QP-01 11 63141399 63141399 T C SLC22A9 Missense_Mutation p.M232T 0.18 tolerated(0.09) benign(0.058) TCGA-AR-A5QP-01 11 76996161 76996161 C - GDPD4 Frame_Shift_Del p.E8Kfs*15 0.31 TCGA-AR-A5QP-01 12 64895816 64895816 A T TBK1 3'UTR 0.11 TCGA-AR-A5QP-01 12 69969102 69969102 A G FRS2 3'UTR 0.28 TCGA-AR-A5QP-01 12 73014957 73014957 T G TRHDE Missense_Mutation p.S802A 0.09 tolerated(0.5) possibly_damaging(0.551) TCGA-AR-A5QP-01 13 84455450 84455450 G A SLITRK1 Silent p.L65L 0.17 TCGA-AR-A5QP-01 14 53347805 53347805 C T FERMT2 Silent p.E268E 0.21 TCGA-AR-A5QP-01 15 72640388 72640388 C T HEXA Splice_Site p.X358_splice 0.23 TCGA-AR-A5QP-01 16 29884862 29884862 C T SEZ6L2 Missense_Mutation p.A765T 0.42 deleterious(0.05) benign(0.007) TCGA-AR-A5QP-01 16 87936072 87936072 C T CA5A Missense_Mutation p.V172M 0.34 tolerated(0.52) benign(0.001) TCGA-AR-A5QP-01 19 33293878 33293878 G A TDRD12 Silent p.L794L 0.14 TCGA-AR-A5QP-01 19 46332288 46332288 T C SYMPK Missense_Mutation p.Y642C 0.08 deleterious(0) probably_damaging(1) TCGA-AR-A5QP-01 19 56896548 56896548 C T ZNF582 Missense_Mutation p.E80K 0.13 tolerated(0.07) benign(0.002) TCGA-AR-A5QP-01 1 145533448 145533448 G T ITGA10 Missense_Mutation p.R444L 0.18 tolerated(0.29) benign(0.369) TCGA-AR-A5QP-01 1 43213975 43213975 C A LEPRE1 Missense_Mutation p.E578D 0.28 tolerated(0.5) benign(0.005) TCGA-AR-A5QP-01 2 128050283 128050283 G A ERCC3 Missense_Mutation p.A125V 0.18 deleterious(0) probably_damaging(1) TCGA-AR-A5QP-01 2 179583473 179583473 C T TTN Missense_Mutation p.V8152I 0.12 TCGA-AR-A5QP-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-AR-A5QP-01 4 39558097 39558097 G A SMIM14 Missense_Mutation p.P73L 0.14 tolerated(0.31) benign(0.048) TCGA-AR-A5QP-01 5 10288580 10288580 T C CMBL Missense_Mutation p.I93V 0.16 tolerated(0.1) benign(0.065) TCGA-AR-A5QP-01 5 167891929 167891929 G A WWC1 Missense_Mutation p.E1044K 0.22 deleterious(0) possibly_damaging(0.758) TCGA-AR-A5QP-01 5 57752411 57752412 CT - PLK2 Frame_Shift_Del p.R387Sfs*3 0.12 TCGA-AR-A5QP-01 5 82373137 82373137 T C TMEM167A Intron 0.24 TCGA-AR-A5QP-01 6 111806014 111806014 T C REV3L 5'Flank 0.32 TCGA-AR-A5QP-01 6 29365192 29365192 C T OR12D2 Missense_Mutation p.T239I 0.11 deleterious(0) probably_damaging(0.994) TCGA-AR-A5QP-01 6 32160634 32160634 C A GPSM3 5'UTR 0.28 TCGA-AR-A5QP-01 7 97846476 97846476 C T TECPR1 3'UTR 0.47 TCGA-AR-A5QP-01 8 26627700 26627700 G T ADRA1A Intron 0.32 TCGA-AR-A5QP-01 8 42259332 42259332 C T VDAC3 Missense_Mutation p.S118F 0.20 deleterious(0.01) possibly_damaging(0.864) TCGA-AR-A5QP-01 9 130690398 130690398 C T PIP5KL1 Missense_Mutation p.G127D 0.19 tolerated(0.22) benign(0.059) TCGA-AR-A5QP-01 X 117566792 117566792 C T WDR44 Missense_Mutation p.R596W 0.10 deleterious(0.05) probably_damaging(0.917) TCGA-AR-A5QP-01 X 153247428 153247428 C T TMEM187 5'UTR 0.33 TCGA-AR-A5QP-01 X 154261714 154261714 C T FUNDC2 Missense_Mutation p.A57V 0.21 deleterious(0.04) benign(0.087) TCGA-AR-A5QP-01 X 77160724 77160724 G C COX7B Missense_Mutation p.G70A 0.08 deleterious(0.03) probably_damaging(0.936) TCGA-AR-A5QQ-01 10 112055020 112055020 T C SMNDC1 Missense_Mutation p.N182S 0.07 tolerated(0.55) probably_damaging(0.983) TCGA-AR-A5QQ-01 10 24885700 24885700 A G ARHGAP21 Missense_Mutation p.L1149P 0.18 deleterious(0) probably_damaging(1) TCGA-AR-A5QQ-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-AR-A5QQ-01 11 10875493 10875493 C T ZBED5 Missense_Mutation p.E334K 0.37 tolerated(0.57) benign(0.03) TCGA-AR-A5QQ-01 11 118403895 118403895 G A TMEM25 Missense_Mutation p.V216I 0.10 tolerated(0.34) benign(0.007) TCGA-AR-A5QQ-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.40 deleterious(0) probably_damaging(0.992) TCGA-AR-A5QQ-01 11 56086127 56086127 C A OR8K3 Silent p.L115L 0.15 TCGA-AR-A5QQ-01 11 58347039 58347039 G A ZFP91 Silent p.Q95Q 0.29 TCGA-AR-A5QQ-01 11 62365548 62365548 C T MTA2 Silent p.E146E 0.10 TCGA-AR-A5QQ-01 11 68552320 68552320 C A CPT1A Missense_Mutation p.G376W 0.13 deleterious(0) probably_damaging(0.999) TCGA-AR-A5QQ-01 12 50349245 50349245 T C AQP2 Missense_Mutation p.F224L 0.08 tolerated(0.07) benign(0.002) TCGA-AR-A5QQ-01 13 101755600 101755600 G A NALCN Silent p.L994L 0.19 TCGA-AR-A5QQ-01 13 103279383 103279383 C T TPP2 Missense_Mutation p.A269V 0.07 deleterious(0) possibly_damaging(0.886) TCGA-AR-A5QQ-01 14 104493246 104493246 C T TDRD9 Silent p.A1084A 0.13 TCGA-AR-A5QQ-01 14 106610512 106610512 A G IGHV3-15 Missense_Mutation p.M53T 0.05 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-AR-A5QQ-01 14 36159078 36159078 C A RALGAPA1 Missense_Mutation p.D800Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-AR-A5QQ-01 14 53184802 53184802 C G PSMC6 Missense_Mutation p.T192R 0.12 deleterious(0) probably_damaging(0.999) TCGA-AR-A5QQ-01 14 74824018 74824018 G A VRTN Missense_Mutation p.A178T 0.12 deleterious(0) probably_damaging(0.997) TCGA-AR-A5QQ-01 14 78028748 78028748 T C SPTLC2 Missense_Mutation p.K281E 0.20 deleterious(0.03) possibly_damaging(0.461) TCGA-AR-A5QQ-01 14 89163200 89163200 C T EML5 Missense_Mutation p.D779N 0.19 tolerated(0.13) probably_damaging(0.913) TCGA-AR-A5QQ-01 15 29347021 29347021 A G APBA2 Missense_Mutation p.K312E 0.11 tolerated_low_confidence(0.28) benign(0.004) TCGA-AR-A5QQ-01 15 30665226 30665226 C T CHRFAM7A Missense_Mutation p.A95T 0.21 deleterious(0.02) possibly_damaging(0.728) TCGA-AR-A5QQ-01 15 54305996 54305996 G A UNC13C Missense_Mutation p.R299Q 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-AR-A5QQ-01 16 27856301 27856301 G A GSG1L Missense_Mutation p.P211L 0.09 deleterious(0) possibly_damaging(0.904) TCGA-AR-A5QQ-01 16 88555465 88555465 C T ZFPM1 Missense_Mutation p.P58S 0.08 tolerated(0.16) benign(0.008) TCGA-AR-A5QQ-01 17 26523062 26523062 G C NLK 3'UTR 0.19 TCGA-AR-A5QQ-01 17 28405362 28405363 GT - EFCAB5 Frame_Shift_Del p.V957Cfs*14 0.33 TCGA-AR-A5QQ-01 17 48433607 48433607 C T XYLT2 Silent p.D489D 0.16 TCGA-AR-A5QQ-01 17 60690029 60690029 C G TLK2 3'UTR 0.19 TCGA-AR-A5QQ-01 17 62500808 62500808 G C DDX5 Missense_Mutation p.A66G 0.21 tolerated(0.08) benign(0.097) TCGA-AR-A5QQ-01 17 75398628 75398628 G A SEPT9 Silent p.V188V 0.10 TCGA-AR-A5QQ-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.15 TCGA-AR-A5QQ-01 18 6943262 6943262 C G LAMA1 Missense_Mutation p.G2995A 0.19 deleterious(0.01) possibly_damaging(0.904) TCGA-AR-A5QQ-01 19 19136590 19136590 C G SUGP2 Silent p.R189R 0.28 TCGA-AR-A5QQ-01 19 40357467 40357467 C G FCGBP Missense_Mutation p.Q5282H 0.26 benign(0.161) TCGA-AR-A5QQ-01 19 7132242 7132242 C G INSR Silent p.V923V 0.06 TCGA-AR-A5QQ-01 1 104093607 104093607 C G RNPC3 Missense_Mutation p.A469G 0.21 deleterious(0) probably_damaging(1) TCGA-AR-A5QQ-01 1 120854498 120854498 A G FAM72B Missense_Mutation p.N121S 0.14 tolerated(0.19) benign(0.295) TCGA-AR-A5QQ-01 1 1417943 1417943 T A ATAD3B Missense_Mutation p.F233L 0.09 tolerated(1) benign(0.013) TCGA-AR-A5QQ-01 1 144918852 144918852 T C PDE4DIP Missense_Mutation p.H445R 0.07 tolerated(0.53) benign(0.211) TCGA-AR-A5QQ-01 1 179603712 179603712 C T TDRD5 Missense_Mutation p.P416L 0.16 tolerated(0.4) benign(0.073) TCGA-AR-A5QQ-01 1 182356328 182356328 A G GLUL Missense_Mutation p.F89S 0.12 deleterious(0) probably_damaging(0.976) TCGA-AR-A5QQ-01 1 1956838 1956838 A G GABRD Missense_Mutation p.M83V 0.13 deleterious(0) probably_damaging(0.976) TCGA-AR-A5QQ-01 1 20082237 20082237 T C TMCO4 Silent p.R135R 0.16 TCGA-AR-A5QQ-01 1 205112833 205112833 C T DSTYK 3'UTR 0.21 TCGA-AR-A5QQ-01 1 230415130 230415130 G A GALNT2 Missense_Mutation p.G548R 0.16 tolerated(0.34) benign(0.008) TCGA-AR-A5QQ-01 1 32151251 32151251 G C COL16A1 Missense_Mutation p.P669A 0.08 unknown(0) TCGA-AR-A5QQ-01 1 40235576 40235576 T C OXCT2 Missense_Mutation p.E451G 0.11 deleterious(0.03) benign(0.019) TCGA-AR-A5QQ-01 1 43282143 43282144 TC - CCDC23 Frame_Shift_Del p.K25Ifs*30 0.13 TCGA-AR-A5QQ-01 1 46651256 46651256 G T TSPAN1 3'UTR 0.15 TCGA-AR-A5QQ-01 1 54387380 54387380 C A HSPB11 Missense_Mutation p.A127S 0.16 deleterious(0.01) possibly_damaging(0.695) TCGA-AR-A5QQ-01 1 62374109 62374109 A G INADL Silent p.G1149G 0.18 TCGA-AR-A5QQ-01 1 86952218 86952218 C T CLCA1 Missense_Mutation p.R322C 0.13 deleterious(0.01) probably_damaging(1) TCGA-AR-A5QQ-01 1 92941510 92941510 G A GFI1 3'UTR 0.16 TCGA-AR-A5QQ-01 1 94054876 94054876 G C BCAR3 Missense_Mutation p.A196G 0.12 tolerated(0.1) benign(0.297) TCGA-AR-A5QQ-01 20 60528653 60528653 C T MIR1257 RNA 0.11 TCGA-AR-A5QQ-01 22 21403320 21403320 C T AC002472.13 Missense_Mutation p.R166W 0.07 tolerated(0.19) possibly_damaging(0.508) TCGA-AR-A5QQ-01 2 109383303 109383303 G C RANBP2 Missense_Mutation p.R2103T 0.04 deleterious(0) probably_damaging(0.987) TCGA-AR-A5QQ-01 2 109527360 109527360 G A EDAR Intron 0.09 TCGA-AR-A5QQ-01 2 189922116 189922116 C G COL5A2 Missense_Mutation p.G756A 0.14 unknown(0) TCGA-AR-A5QQ-01 2 86709793 86709793 T C KDM3A Silent p.F966F 0.14 TCGA-AR-A5QQ-01 3 119198942 119198942 G C POGLUT1 Missense_Mutation p.W167C 0.11 deleterious(0) probably_damaging(1) TCGA-AR-A5QQ-01 3 148877950 148877950 A T HPS3 Missense_Mutation p.R664W 0.17 deleterious(0) possibly_damaging(0.61) TCGA-AR-A5QQ-01 3 14975241 14975241 T C FGD5 3'UTR 0.29 TCGA-AR-A5QQ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.19 tolerated(0.11) possibly_damaging(0.529) TCGA-AR-A5QQ-01 3 47898938 47898938 T C MAP4 Missense_Mutation p.N1044S 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-AR-A5QQ-01 3 52554111 52554111 G A STAB1 Missense_Mutation p.R1796Q 0.15 deleterious(0.01) possibly_damaging(0.667) TCGA-AR-A5QQ-01 4 144481165 144481165 T G SMARCA5 3'Flank 0.14 TCGA-AR-A5QQ-01 4 160259475 160259475 T A RAPGEF2 Silent p.I555I 0.10 TCGA-AR-A5QQ-01 4 23797418 23797418 C T PPARGC1A 3'UTR 0.19 TCGA-AR-A5QQ-01 4 57829602 57829602 G C NOA1 3'UTR 0.13 TCGA-AR-A5QQ-01 4 74853801 74853801 G A PPBP Missense_Mutation p.T7I 0.12 deleterious(0.01) benign(0.053) TCGA-AR-A5QQ-01 5 140536921 140536921 G A PCDHB17 Missense_Mutation p.A449T 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.705) TCGA-AR-A5QQ-01 5 140553974 140553974 G C PCDHB7 Missense_Mutation p.D520H 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AR-A5QQ-01 5 140580562 140580563 AG - PCDHB11 Frame_Shift_Del p.R407Tfs*36 0.19 TCGA-AR-A5QQ-01 5 179393960 179393960 G A RNF130 Silent p.T332T 0.10 TCGA-AR-A5QQ-01 5 179731905 179731905 C T GFPT2 Missense_Mutation p.G570D 0.12 deleterious(0) probably_damaging(0.999) TCGA-AR-A5QQ-01 5 35694435 35694435 T G SPEF2 Missense_Mutation p.L649V 0.15 tolerated(0.28) benign(0.006) TCGA-AR-A5QQ-01 5 9630169 9630169 T C TAS2R1 5'UTR 0.15 TCGA-AR-A5QQ-01 6 20481453 20481454 AG - E2F3 Frame_Shift_Del p.E175Kfs*5 0.18 TCGA-AR-A5QQ-01 6 33168855 33168855 T A SLC39A7 5'UTR 0.10 TCGA-AR-A5QQ-01 6 44221460 44221460 C A HSP90AB1 3'UTR 0.06 TCGA-AR-A5QQ-01 6 90383931 90383931 C A MDN1 Missense_Mutation p.W4380L 0.12 possibly_damaging(0.835) TCGA-AR-A5QQ-01 7 100218455 100218455 C T TFR2 3'UTR 0.12 TCGA-AR-A5QQ-01 7 120496782 120496782 G C TSPAN12 Missense_Mutation p.C12W 0.15 tolerated(0.09) probably_damaging(0.957) TCGA-AR-A5QQ-01 7 2617916 2617916 C T IQCE Missense_Mutation p.T169M 0.11 deleterious(0) probably_damaging(0.993) TCGA-AR-A5QQ-01 7 64151723 64151723 T C ZNF107 5'UTR 0.22 TCGA-AR-A5QQ-01 7 96251844 96251844 A C RP11-682N22.1 RNA 0.18 TCGA-AR-A5QQ-01 8 54879688 54879688 C T TCEA1 3'UTR 0.23 TCGA-AR-A5QQ-01 8 73849543 73849543 T A KCNB2 Missense_Mutation p.F651L 0.25 tolerated_low_confidence(0.74) benign(0.021) TCGA-AR-A5QQ-01 9 138590846 138590846 C G SOHLH1 Missense_Mutation p.E64D 0.13 deleterious(0.02) possibly_damaging(0.801) TCGA-AR-A5QQ-01 9 140728964 140728964 G C EHMT1 Missense_Mutation p.G1235A 0.13 deleterious(0) possibly_damaging(0.833) TCGA-AR-A5QQ-01 9 16437297 16437297 C T BNC2 Missense_Mutation p.A299T 0.15 tolerated(0.74) benign(0.002) TCGA-AR-A5QQ-01 9 19371903 19371903 A T DENND4C Intron 0.19 TCGA-AR-A5QQ-01 9 78722166 78722166 G C PCSK5 Splice_Site p.X370_splice 0.24 TCGA-AR-A5QQ-01 X 108926582 108926582 C T ACSL4 Missense_Mutation p.R45K 0.08 tolerated(0.18) benign(0.031) TCGA-AR-A5QQ-01 X 118221920 118221920 G T KIAA1210 Silent p.T1091T 0.23 TCGA-AR-A5QQ-01 X 123539064 123539064 A C TENM1 Silent p.T1736T 0.17 TCGA-AR-A5QQ-01 X 150911871 150911871 C G CNGA2 Missense_Mutation p.S299C 0.22 tolerated(0.17) possibly_damaging(0.907) TCGA-AR-A5QQ-01 X 153735095 153735095 C A FAM3A 3'UTR 0.14 TCGA-AR-A5QQ-01 X 2645333 2645351 GGTCAGCTGGCAGGCTCTT - CD99 Intron 0.11 TCGA-AR-A5QQ-01 X 41333758 41333758 T C NYX Missense_Mutation p.M351T 0.17 tolerated(0.21) benign(0.423) TCGA-B6-A0I1-01 10 102286277 102286277 C T NDUFB8 Missense_Mutation p.R116H 0.36 deleterious(0) possibly_damaging(0.537) TCGA-B6-A0I1-01 10 73326568 73326568 G A CDH23 Missense_Mutation p.V167I 0.22 tolerated(0.08) possibly_damaging(0.492) TCGA-B6-A0I1-01 10 90530616 90530616 C A LIPN Silent p.T229T 0.60 TCGA-B6-A0I1-01 11 125792932 125792932 T - DDX25 3'UTR 0.39 TCGA-B6-A0I1-01 11 840391 840391 T A POLR2L Missense_Mutation p.Y62F 0.24 tolerated(0.1) benign(0.006) TCGA-B6-A0I1-01 11 86661021 86661021 T C FZD4 3'UTR 0.29 TCGA-B6-A0I1-01 12 108930340 108930340 C T SART3 Missense_Mutation p.E466K 0.38 tolerated(0.44) benign(0.443) TCGA-B6-A0I1-01 12 11420899 11420899 C T PRB3 Missense_Mutation p.R95H 0.30 tolerated(0.22) unknown(0) TCGA-B6-A0I1-01 12 4479578 4479578 G A FGF23 Silent p.G229G 0.41 TCGA-B6-A0I1-01 12 5020726 5020726 C T KCNA1 Missense_Mutation p.T61M 0.41 deleterious(0) probably_damaging(1) TCGA-B6-A0I1-01 12 57110262 57110262 T C NACA Intron 0.20 TCGA-B6-A0I1-01 13 101828727 101828727 T G NALCN Splice_Site p.X589_splice 0.50 TCGA-B6-A0I1-01 14 107013245 107013245 A T IGHV3-49 Missense_Mutation p.V17D 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B6-A0I1-01 14 22459032 22459032 C T TRAV16 Missense_Mutation p.R62C 0.67 deleterious(0) possibly_damaging(0.824) TCGA-B6-A0I1-01 15 20738166 20738166 G A GOLGA6L6 3'UTR 0.34 TCGA-B6-A0I1-01 15 23444088 23444088 G C AC100757.1 5'Flank 0.19 TCGA-B6-A0I1-01 16 2108763 2108763 C T TSC2 Silent p.D288D 0.31 TCGA-B6-A0I1-01 16 2806345 2806346 - C SRRM2 5'UTR 0.33 TCGA-B6-A0I1-01 16 28374412 28374412 C T NPIPB6 5'UTR 0.11 TCGA-B6-A0I1-01 16 64981090 64981090 C G CDH11 3'UTR 0.12 TCGA-B6-A0I1-01 16 855570 855570 T A PRR25 Missense_Mutation p.I43N 0.08 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-B6-A0I1-01 16 855571 855571 C T PRR25 Silent p.I43I 0.08 TCGA-B6-A0I1-01 16 89980752 89980763 TGTGTGTGTGCC - MC1R 5'Flank 0.29 TCGA-B6-A0I1-01 16 89981142 89981143 TG - MC1R 5'Flank 0.08 TCGA-B6-A0I1-01 16 89981248 89981249 TG - MC1R 5'Flank 0.14 TCGA-B6-A0I1-01 17 38517224 38517224 C A CTD-2267D19.3 5'UTR 0.27 TCGA-B6-A0I1-01 17 46153404 46153404 C T CBX1 Missense_Mutation p.D93N 0.10 tolerated(0.41) benign(0.021) TCGA-B6-A0I1-01 17 5393027 5393027 C T MIS12 3'UTR 0.75 TCGA-B6-A0I1-01 17 6900213 6900213 C G ALOX12 Missense_Mutation p.H68Q 0.36 tolerated(0.35) benign(0.004) TCGA-B6-A0I1-01 17 73560623 73560623 G A LLGL2 Intron 0.51 TCGA-B6-A0I1-01 17 73915866 73915866 G A FBF1 Missense_Mutation p.S659L 0.51 deleterious(0.05) probably_damaging(0.995) TCGA-B6-A0I1-01 17 7499186 7499186 T C FXR2 Missense_Mutation p.I263V 0.31 tolerated(0.08) probably_damaging(0.911) TCGA-B6-A0I1-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.73 deleterious(0) probably_damaging(1) TCGA-B6-A0I1-01 18 13671959 13671959 C T FAM210A Missense_Mutation p.V163I 0.47 tolerated(0.43) benign(0.078) TCGA-B6-A0I1-01 18 3534260 3534260 C T DLGAP1 Missense_Mutation p.R804Q 0.07 deleterious(0) benign(0.187) TCGA-B6-A0I1-01 18 61305182 61305182 G T SERPINB4 Nonsense_Mutation p.S315* 0.16 TCGA-B6-A0I1-01 18 72345206 72345206 T G ZNF407 Missense_Mutation p.L744W 0.24 deleterious(0) probably_damaging(0.937) TCGA-B6-A0I1-01 18 74402468 74402468 C T AC034110.1 RNA 0.48 TCGA-B6-A0I1-01 19 10668659 10668659 G C KRI1 Missense_Mutation p.P456A 0.33 tolerated(0.07) benign(0.043) TCGA-B6-A0I1-01 19 18307741 18307741 T G RAB3A 3'UTR 0.26 TCGA-B6-A0I1-01 19 2042426 2042426 C G MKNK2 Silent p.P250P 0.60 TCGA-B6-A0I1-01 19 33098608 33098608 T C ANKRD27 Missense_Mutation p.N769S 0.21 tolerated(0.61) possibly_damaging(0.621) TCGA-B6-A0I1-01 1 113499291 113499308 GCCGCTGGCACCCGGGAA - SLC16A1 5'Flank 0.41 TCGA-B6-A0I1-01 1 147097326 147097326 C T BCL9 3'UTR 0.07 TCGA-B6-A0I1-01 1 158326451 158326452 - C CD1E Intron 0.25 TCGA-B6-A0I1-01 1 201350520 201350520 C A LAD1 3'UTR 0.74 TCGA-B6-A0I1-01 1 203151969 203151969 G C CHI3L1 Silent p.A159A 0.11 TCGA-B6-A0I1-01 1 31465250 31465250 T C PUM1 Missense_Mutation p.N382S 0.36 tolerated_low_confidence(0.27) benign(0.021) TCGA-B6-A0I1-01 1 55253397 55253397 G T TTC22 Missense_Mutation p.D242E 0.27 tolerated(0.5) benign(0.002) TCGA-B6-A0I1-01 20 33575610 33575610 C T MYH7B Missense_Mutation p.R479W 0.27 probably_damaging(1) TCGA-B6-A0I1-01 20 43738395 43738395 A G WFDC5 3'UTR 0.26 TCGA-B6-A0I1-01 20 57564939 57564939 G A NELFCD Silent p.T246T 0.22 TCGA-B6-A0I1-01 21 42830560 42830560 G C MX1 Missense_Mutation p.D622H 0.18 deleterious(0) possibly_damaging(0.858) TCGA-B6-A0I1-01 21 46020924 46020924 A T KRTAP10-7 Missense_Mutation p.S135C 0.09 tolerated(0.71) unknown(0) TCGA-B6-A0I1-01 22 45309797 45309797 C A PHF21B Missense_Mutation p.A246S 0.49 tolerated(0.13) benign(0.271) TCGA-B6-A0I1-01 22 46704338 46704338 C G GTSE1 Missense_Mutation p.P87R 0.39 tolerated(0.66) benign(0.006) TCGA-B6-A0I1-01 22 46785190 46785190 G A CELSR1 Silent p.H2184H 0.33 TCGA-B6-A0I1-01 2 38298207 38298207 G C CYP1B1 Missense_Mutation p.D430E 0.30 deleterious(0) possibly_damaging(0.873) TCGA-B6-A0I1-01 2 70678864 70678864 C A TGFA Intron 0.42 TCGA-B6-A0I1-01 3 100539121 100539121 G A ABI3BP Intron 0.42 TCGA-B6-A0I1-01 3 10114587 10114587 T A FANCD2 Missense_Mutation p.F843I 0.34 deleterious(0) probably_damaging(0.925) TCGA-B6-A0I1-01 3 113374402 113374402 C G KIAA2018 Missense_Mutation p.D2043H 0.13 possibly_damaging(0.866) TCGA-B6-A0I1-01 3 14508135 14508135 A T SLC6A6 Missense_Mutation p.I282F 0.50 tolerated(0.54) benign(0.367) TCGA-B6-A0I1-01 3 38793763 38793763 C T SCN10A Missense_Mutation p.E568K 0.39 tolerated(0.86) benign(0.001) TCGA-B6-A0I1-01 4 4204225 4204229 TTGAG - OTOP1 Frame_Shift_Del p.L226* 0.33 TCGA-B6-A0I1-01 4 76924671 76924671 G A CXCL9 3'UTR 0.44 TCGA-B6-A0I1-01 4 79396713 79396713 G A FRAS1 Missense_Mutation p.V2602I 0.16 benign(0.043) TCGA-B6-A0I1-01 5 136953829 136953829 C T KLHL3 3'UTR 0.13 TCGA-B6-A0I1-01 5 1466933 1466933 C A LPCAT1 Missense_Mutation p.V451L 0.12 tolerated(0.1) possibly_damaging(0.686) TCGA-B6-A0I1-01 5 5209207 5209207 A T ADAMTS16 Missense_Mutation p.T485S 0.21 tolerated(0.38) benign(0.26) TCGA-B6-A0I1-01 7 128626857 128626857 T C TNPO3 Missense_Mutation p.N539S 0.34 tolerated(1) benign(0.001) TCGA-B6-A0I1-01 7 4825183 4825183 G A AP5Z1 Missense_Mutation p.V334M 0.24 tolerated(0.13) benign(0.063) TCGA-B6-A0I1-01 7 72413124 72413124 C T POM121 Silent p.F599F 0.10 TCGA-B6-A0I1-01 8 103284779 103284779 A T UBR5 Missense_Mutation p.N2317K 0.16 tolerated(0.28) benign(0.024) TCGA-B6-A0I1-01 8 124518725 124518725 G T FBXO32 Silent p.V247V 0.10 TCGA-B6-A0I1-01 8 128751160 128751160 C A MYC Missense_Mutation p.P233T 0.20 tolerated(0.22) benign(0.005) TCGA-B6-A0I1-01 8 79629671 79629671 C A ZC2HC1A Nonsense_Mutation p.Y307* 0.20 TCGA-B6-A0I1-01 9 101151241 101151241 C A GABBR2 Missense_Mutation p.R475L 0.44 tolerated(0.18) benign(0.068) TCGA-B6-A0I1-01 9 104184173 104184173 G A ALDOB Missense_Mutation p.A338V 0.29 deleterious(0) probably_damaging(1) TCGA-B6-A0I1-01 9 134305632 134305632 C G PRRC2B Missense_Mutation p.A34G 0.27 deleterious(0) possibly_damaging(0.624) TCGA-B6-A0I1-01 9 135947193 135947193 C T CEL 3'UTR 0.30 TCGA-B6-A0I1-01 9 78790036 78790036 G A PCSK5 Missense_Mutation p.D631N 0.36 tolerated(0.11) probably_damaging(0.928) TCGA-B6-A0I1-01 X 122623005 122623006 - A GRIA3 3'UTR 0.37 TCGA-B6-A0I1-01 X 13790934 13790934 G A GPM6B 3'UTR 0.20 TCGA-B6-A0I1-01 X 153689607 153689607 G A PLXNA3 Missense_Mutation p.E255K 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-B6-A0I1-01 X 30847977 30847977 G T TAB3 3'UTR 0.34 TCGA-B6-A0I1-01 X 47308150 47308150 G A ZNF41 Missense_Mutation p.S340L 0.24 deleterious(0) probably_damaging(0.997) TCGA-B6-A0I1-01 X 50213256 50213256 A T DGKK RNA 0.30 TCGA-B6-A0I1-01 X 54472329 54472329 T G FGD1 3'UTR 0.28 TCGA-B6-A0IH-01 10 75457371 75457371 G A AGAP5 Missense_Mutation p.A48V 0.07 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-B6-A0IH-01 10 76863684 76863684 G A DUSP13 Intron 0.13 TCGA-B6-A0IH-01 10 94000089 94000089 T G CPEB3 Missense_Mutation p.M7L 0.17 tolerated_low_confidence(0.24) benign(0.003) TCGA-B6-A0IH-01 10 98742433 98742433 A T C10orf12 Missense_Mutation p.Q429L 0.21 tolerated(0.38) benign(0.014) TCGA-B6-A0IH-01 11 6645151 6645151 C T DCHS1 Missense_Mutation p.V2586M 0.11 deleterious(0.04) probably_damaging(1) TCGA-B6-A0IH-01 12 113599787 113599787 C T DDX54 Silent p.K737K 0.13 TCGA-B6-A0IH-01 12 28605481 28605481 C T CCDC91 Missense_Mutation p.A332V 0.08 tolerated(1) benign(0.001) TCGA-B6-A0IH-01 12 48535119 48535119 T C PFKM Missense_Mutation p.V527A 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-B6-A0IH-01 15 28357017 28357017 G A HERC2 Silent p.I4799I 0.30 TCGA-B6-A0IH-01 15 79760670 79760670 G A KIAA1024 Missense_Mutation p.A899T 0.29 tolerated(0.15) probably_damaging(1) TCGA-B6-A0IH-01 16 20043354 20043354 C T GPR139 Silent p.A255A 0.10 TCGA-B6-A0IH-01 16 28157469 28157469 T C XPO6 Missense_Mutation p.Y427C 0.13 deleterious(0) possibly_damaging(0.759) TCGA-B6-A0IH-01 16 31498781 31498781 C A SLC5A2 Intron 0.10 TCGA-B6-A0IH-01 16 68845601 68845615 GAGGTCACAGCCACA - CDH1 In_Frame_Del p.E283_T287del 0.34 TCGA-B6-A0IH-01 17 39726220 39726220 T C KRT9 Missense_Mutation p.N258S 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-B6-A0IH-01 17 61498693 61498693 C T TANC2 Missense_Mutation p.P1784S 0.20 tolerated_low_confidence(0.38) benign(0.255) TCGA-B6-A0IH-01 17 71364597 71364597 C T SDK2 Missense_Mutation p.A1706T 0.13 deleterious(0.02) probably_damaging(1) TCGA-B6-A0IH-01 19 37643448 37643448 C T ZNF585A Silent p.S396S 0.20 TCGA-B6-A0IH-01 1 156628466 156628466 C T BCAN Nonsense_Mutation p.R857* 0.08 TCGA-B6-A0IH-01 1 16059120 16059120 A G PLEKHM2 Missense_Mutation p.D940G 0.10 deleterious(0) possibly_damaging(0.455) TCGA-B6-A0IH-01 1 86961326 86961326 G A CLCA1 Missense_Mutation p.G694E 0.22 tolerated(0.25) possibly_damaging(0.747) TCGA-B6-A0IH-01 21 36206716 36206716 G A RUNX1 Nonsense_Mutation p.Q266* 0.23 TCGA-B6-A0IH-01 2 136579662 136579662 T A LCT Missense_Mutation p.N305I 0.10 tolerated(0.08) benign(0.288) TCGA-B6-A0IH-01 2 201457886 201457886 C A AOX1 Silent p.V21V 0.03 TCGA-B6-A0IH-01 3 122255807 122255807 C A PARP9 Nonsense_Mutation p.E662* 0.03 TCGA-B6-A0IH-01 3 38347837 38347837 G A SLC22A14 Missense_Mutation p.G107D 0.15 tolerated(0.22) benign(0.025) TCGA-B6-A0IH-01 3 69230403 69230403 T C FRMD4B Missense_Mutation p.Y833C 0.09 deleterious(0) probably_damaging(0.999) TCGA-B6-A0IH-01 5 76335438 76335438 G A AGGF1 Missense_Mutation p.R255Q 0.09 tolerated(0.17) benign(0.19) TCGA-B6-A0IH-01 5 93807281 93807281 C T KIAA0825 Silent p.E537E 0.10 TCGA-B6-A0IH-01 6 112375502 112375502 G A WISP3 5'UTR 0.13 TCGA-B6-A0IH-01 6 3225572 3225572 G A TUBB2B Missense_Mutation p.R251C 0.07 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-B6-A0IH-01 7 50663154 50663154 T A GRB10 Nonsense_Mutation p.K540* 0.34 TCGA-B6-A0IH-01 7 74211389 74211389 T G GTF2IRD2 Missense_Mutation p.N821T 0.32 tolerated(0.19) benign(0.357) TCGA-B6-A0IH-01 8 77616660 77616660 G A ZFHX4 Missense_Mutation p.E113K 0.07 possibly_damaging(0.502) TCGA-B6-A0IH-01 9 105767619 105767619 G T CYLC2 Missense_Mutation p.A236S 0.26 tolerated(0.44) unknown(0) TCGA-B6-A0IH-01 9 125377831 125377831 G A OR1Q1 Missense_Mutation p.R272H 0.16 tolerated(0.21) benign(0.071) TCGA-B6-A0IH-01 9 14658806 14658806 C T ZDHHC21 Missense_Mutation p.A149T 0.38 tolerated(1) benign(0.004) TCGA-B6-A0IH-01 9 3346744 3346745 CA - RFX3 Frame_Shift_Del p.V46Afs*49 0.13 TCGA-B6-A0IH-01 9 86617271 86617271 A G RMI1 Missense_Mutation p.Q457R 0.17 tolerated(0.23) benign(0.051) TCGA-B6-A0IH-01 X 140983081 140983081 G A MAGEC3 Silent p.A312A 0.11 TCGA-B6-A0IH-01 X 149814175 149814175 C T MTM1 Missense_Mutation p.P233L 0.12 deleterious(0.02) possibly_damaging(0.677) TCGA-B6-A0IH-01 X 150911996 150911996 A T CNGA2 Missense_Mutation p.T341S 0.10 deleterious(0) possibly_damaging(0.856) TCGA-B6-A0IH-01 X 155232671 155232672 - G IL9R Frame_Shift_Ins p.E45Gfs*8 0.25 TCGA-B6-A0IH-01 X 72667161 72667161 C T CDX4 Silent p.D24D 0.09 TCGA-B6-A0RH-01 10 21827790 21827790 T A MLLT10 Silent p.T63T 0.37 TCGA-B6-A0RH-01 10 76739051 76739051 G A KAT6B Missense_Mutation p.E729K 0.23 possibly_damaging(0.646) TCGA-B6-A0RH-01 11 33047294 33047294 C T DEPDC7 Nonsense_Mutation p.R55* 0.32 TCGA-B6-A0RH-01 12 11803047 11803047 C G ETV6 5'UTR 0.26 TCGA-B6-A0RH-01 12 64875760 64875760 A G TBK1 Silent p.Q317Q 0.24 TCGA-B6-A0RH-01 12 8692541 8692543 TCT A CLEC4E Frame_Shift_Del p.E13Vfs*40 0.20 TCGA-B6-A0RH-01 14 101348922 101348922 A G RTL1 Missense_Mutation p.V735A 0.32 deleterious(0) probably_damaging(0.991) TCGA-B6-A0RH-01 14 23562750 23562750 G C ACIN1 Missense_Mutation p.L106V 0.12 probably_damaging(0.994) TCGA-B6-A0RH-01 14 64636985 64636985 G A SYNE2 Silent p.R5680R 0.36 TCGA-B6-A0RH-01 16 19451502 19451502 C G TMC5 Missense_Mutation p.P48A 0.28 deleterious_low_confidence(0.02) benign(0.159) TCGA-B6-A0RH-01 17 12011227 12011228 - T MAP2K4 Splice_Site p.X211_splice 0.16 TCGA-B6-A0RH-01 17 29325839 29325839 C T RNF135 Missense_Mutation p.S310F 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-B6-A0RH-01 17 38954517 38954517 C G KRT28 Missense_Mutation p.E220D 0.16 deleterious(0.01) probably_damaging(0.966) TCGA-B6-A0RH-01 17 7578190 7578190 T G TP53 Missense_Mutation p.Y220S 0.49 deleterious(0) probably_damaging(1) TCGA-B6-A0RH-01 17 79422327 79422327 G C RP11-1055B8.7 Missense_Mutation p.E1494Q 0.38 probably_damaging(0.995) TCGA-B6-A0RH-01 17 79422378 79422378 G C RP11-1055B8.7 Missense_Mutation p.E1511Q 0.38 benign(0.33) TCGA-B6-A0RH-01 18 54385232 54385232 A T WDR7 Missense_Mutation p.D539V 0.56 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RH-01 19 33464469 33464469 G A C19orf40 Splice_Site p.X81_splice 0.22 TCGA-B6-A0RH-01 19 38743550 38743554 CTCTC - PPP1R14A Frame_Shift_Del p.E88Kfs*77 0.31 TCGA-B6-A0RH-01 19 41313453 41313453 C T EGLN2 Silent p.L389L 0.07 TCGA-B6-A0RH-01 19 56369170 56369170 C G NLRP4 Silent p.R137R 0.25 TCGA-B6-A0RH-01 1 114397570 114397570 A C PTPN22 Missense_Mutation p.C214W 0.32 deleterious(0.01) probably_damaging(0.94) TCGA-B6-A0RH-01 1 150479529 150479529 G A TARS2 Missense_Mutation p.E716K 0.29 deleterious(0.02) possibly_damaging(0.488) TCGA-B6-A0RH-01 1 150480643 150480643 G A ECM1 5'UTR 0.22 TCGA-B6-A0RH-01 1 222801435 222801435 G A MIA3 Silent p.E291E 0.15 TCGA-B6-A0RH-01 1 227069706 227069706 A G PSEN2 Missense_Mutation p.E33G 0.65 tolerated(0.09) benign(0.098) TCGA-B6-A0RH-01 1 23222000 23222000 C T EPHB2 Missense_Mutation p.L543F 0.30 deleterious(0.03) benign(0.114) TCGA-B6-A0RH-01 1 46650495 46650495 C G TSPAN1 Missense_Mutation p.I126M 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-B6-A0RH-01 21 45179185 45179185 C T PDXK 3'UTR 0.33 TCGA-B6-A0RH-01 21 46888236 46888236 G A COL18A1 Missense_Mutation p.D243N 0.46 unknown(0) TCGA-B6-A0RH-01 22 22599458 22599458 C T VPREB1 Silent p.I49I 0.28 TCGA-B6-A0RH-01 2 25861892 25861892 G A DTNB Nonsense_Mutation p.R47* 0.37 TCGA-B6-A0RH-01 3 122399872 122399872 C T PARP14 Missense_Mutation p.P48S 0.29 tolerated(0.07) possibly_damaging(0.904) TCGA-B6-A0RH-01 3 164716394 164716394 G A SI Nonsense_Mutation p.R1492* 0.33 TCGA-B6-A0RH-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.64 deleterious(0.02) probably_damaging(0.959) TCGA-B6-A0RH-01 3 48732632 48732633 - C IP6K2 Frame_Shift_Ins p.C31Wfs*7 0.30 TCGA-B6-A0RH-01 5 134059307 134059307 C T SEC24A Silent p.F1038F 0.29 TCGA-B6-A0RH-01 5 149510159 149510159 C T PDGFRB Missense_Mutation p.R437H 0.32 tolerated(0.47) possibly_damaging(0.731) TCGA-B6-A0RH-01 5 171766429 171766429 A C SH3PXD2B Missense_Mutation p.I560M 0.36 deleterious(0.05) benign(0.059) TCGA-B6-A0RH-01 5 76349814 76349814 G A AGGF1 Missense_Mutation p.V498I 0.32 tolerated(0.43) benign(0.042) TCGA-B6-A0RH-01 6 135239564 135239564 C T ALDH8A1 Missense_Mutation p.V485I 0.04 tolerated(1) benign(0.003) TCGA-B6-A0RH-01 6 42985588 42985588 C T KLHDC3 Intron 0.35 TCGA-B6-A0RH-01 7 128317709 128317709 C T FAM71F2 Silent p.L153L 0.32 TCGA-B6-A0RH-01 8 19263493 19263493 C T CSGALNACT1 Missense_Mutation p.R466Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RH-01 9 113169979 113169979 A G SVEP1 Missense_Mutation p.F2634S 0.31 benign(0.002) TCGA-B6-A0RH-01 9 2116045 2116045 A G SMARCA2 Missense_Mutation p.N1227S 0.33 benign(0.292) TCGA-B6-A0RH-01 9 84605378 84605378 G T SPATA31D1 Missense_Mutation p.R93S 0.30 deleterious(0.01) benign(0.376) TCGA-B6-A0RH-01 9 96021765 96021765 G A WNK2 Missense_Mutation p.V979M 0.27 unknown(0) TCGA-B6-A0RH-01 9 99798887 99798887 C G CTSV Missense_Mutation p.G180A 0.20 deleterious(0.01) probably_damaging(1) TCGA-B6-A0RL-01 10 129913650 129913650 T C MKI67 Missense_Mutation p.E341G 0.68 tolerated(0.09) benign(0.023) TCGA-B6-A0RL-01 10 24885808 24885808 T C ARHGAP21 Missense_Mutation p.D1113G 0.06 deleterious(0) possibly_damaging(0.836) TCGA-B6-A0RL-01 11 108200961 108200961 G A ATM Missense_Mutation p.R2443Q 0.79 deleterious(0.03) probably_damaging(0.938) TCGA-B6-A0RL-01 11 18387353 18387353 G A GTF2H1 Missense_Mutation p.M528I 0.18 tolerated(0.13) benign(0.06) TCGA-B6-A0RL-01 11 26463534 26463534 G A ANO3 Missense_Mutation p.C39Y 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B6-A0RL-01 11 285169 285169 G T NLRP6 Silent p.L848L 0.40 TCGA-B6-A0RL-01 11 35454047 35454047 G A PAMR1 Missense_Mutation p.P691S 0.46 tolerated(0.18) probably_damaging(0.999) TCGA-B6-A0RL-01 11 5510634 5510634 C A OR52D1 Missense_Mutation p.S233Y 0.06 deleterious(0.01) possibly_damaging(0.701) TCGA-B6-A0RL-01 11 6623119 6623119 T C RRP8 Missense_Mutation p.I142M 0.02 deleterious_low_confidence(0.02) benign(0.001) TCGA-B6-A0RL-01 11 70221217 70221217 T A PPFIA1 Intron 0.03 TCGA-B6-A0RL-01 11 77920555 77920555 C T USP35 Missense_Mutation p.P552S 0.05 tolerated(0.62) unknown(0) TCGA-B6-A0RL-01 12 2787007 2787007 G A CACNA1C Missense_Mutation p.A1737T 0.18 tolerated(0.09) possibly_damaging(0.594) TCGA-B6-A0RL-01 12 39763593 39763594 - T KIF21A Frame_Shift_Ins p.H130Tfs*5 0.35 TCGA-B6-A0RL-01 15 59182618 59182618 G C SLTM Silent p.R647R 0.53 TCGA-B6-A0RL-01 15 73636011 73636011 G A HCN4 Silent p.I308I 0.24 TCGA-B6-A0RL-01 16 11984967 11984967 G A GSPT1 Missense_Mutation p.T243M 0.27 deleterious(0.02) possibly_damaging(0.674) TCGA-B6-A0RL-01 16 30936072 30936072 G A FBXL19 Missense_Mutation p.G7R 0.57 tolerated_low_confidence(0.83) benign(0.01) TCGA-B6-A0RL-01 17 56083103 56083103 C T SRSF1 Intron 0.40 TCGA-B6-A0RL-01 17 62290439 62290439 A G TEX2 Missense_Mutation p.I380T 0.29 tolerated(0.57) benign(0.001) TCGA-B6-A0RL-01 17 79663674 79663674 G A HGS Missense_Mutation p.R535H 0.46 deleterious(0) probably_damaging(0.976) TCGA-B6-A0RL-01 18 259687 259687 C T THOC1 Missense_Mutation p.C140Y 0.77 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RL-01 19 17476158 17476158 C T PLVAP Silent p.A372A 0.30 TCGA-B6-A0RL-01 19 53321244 53321244 G A ZNF28 5'UTR 0.07 TCGA-B6-A0RL-01 19 54392993 54392993 G A PRKCG Missense_Mutation p.M129I 0.40 deleterious(0.04) benign(0.013) TCGA-B6-A0RL-01 1 100366362 100366362 C T AGL Missense_Mutation p.P1178L 0.46 deleterious(0.05) possibly_damaging(0.599) TCGA-B6-A0RL-01 1 117554169 117554169 C T CD101 Intron 0.25 TCGA-B6-A0RL-01 1 151028400 151028400 G C CDC42SE1 5'UTR 0.44 TCGA-B6-A0RL-01 1 154164504 154164504 C T TPM3 5'UTR 0.09 TCGA-B6-A0RL-01 1 216692549 216692549 C T ESRRG Missense_Mutation p.M371I 0.35 tolerated(0.1) benign(0.026) TCGA-B6-A0RL-01 1 243716070 243716070 G T AKT3 Nonsense_Mutation p.S375* 0.23 TCGA-B6-A0RL-01 1 53537256 53537256 G A PODN Missense_Mutation p.R169Q 0.88 tolerated(0.39) benign(0.004) TCGA-B6-A0RL-01 1 89575880 89575880 G A GBP2 Nonsense_Mutation p.Q478* 0.12 TCGA-B6-A0RL-01 21 46917566 46917566 G A COL18A1 Missense_Mutation p.G1072R 0.37 probably_damaging(1) TCGA-B6-A0RL-01 22 21990886 21990886 C G CCDC116 Missense_Mutation p.L457V 0.34 deleterious(0) probably_damaging(1) TCGA-B6-A0RL-01 22 38120815 38120815 G A TRIOBP Missense_Mutation p.R751Q 0.78 tolerated_low_confidence(0.11) benign(0.238) TCGA-B6-A0RL-01 22 41545099 41545099 C T EP300 Nonsense_Mutation p.Q767* 0.79 TCGA-B6-A0RL-01 2 169948337 169948337 A - DHRS9 Frame_Shift_Del p.I204Lfs*14 0.11 TCGA-B6-A0RL-01 2 202254601 202254601 T G TRAK2 Missense_Mutation p.E372D 0.43 tolerated(1) benign(0.009) TCGA-B6-A0RL-01 2 210685368 210685368 G A UNC80 Missense_Mutation p.G766S 0.45 benign(0.08) TCGA-B6-A0RL-01 2 220494977 220494977 C T SLC4A3 Silent p.G265G 0.61 TCGA-B6-A0RL-01 2 90229327 90229327 G A IGKV1D-42 Silent p.E49E 0.05 TCGA-B6-A0RL-01 3 113286552 113286552 G A SIDT1 Silent p.Q170Q 0.46 TCGA-B6-A0RL-01 3 113656968 113656968 C G GRAMD1C Missense_Mutation p.L557V 0.41 tolerated(0.09) benign(0.021) TCGA-B6-A0RL-01 3 50000075 50000075 A T RBM6 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-B6-A0RL-01 3 74350659 74350659 A G CNTN3 Missense_Mutation p.V662A 0.39 tolerated(0.23) benign(0.047) TCGA-B6-A0RL-01 4 23830085 23830085 C A PPARGC1A Missense_Mutation p.S232I 0.19 deleterious(0.03) possibly_damaging(0.878) TCGA-B6-A0RL-01 4 3449688 3449688 G A HGFAC Missense_Mutation p.C521Y 0.57 deleterious(0) probably_damaging(1) TCGA-B6-A0RL-01 4 44626683 44626683 G A YIPF7 Silent p.S205S 0.51 TCGA-B6-A0RL-01 4 71202008 71202008 A C CABS1 3'UTR 0.60 TCGA-B6-A0RL-01 4 75147227 75147227 G A MTHFD2L Silent p.V297V 0.45 TCGA-B6-A0RL-01 4 956304 956304 G A DGKQ Silent p.L711L 0.44 TCGA-B6-A0RL-01 5 1235615 1235615 G - SLC6A18 Frame_Shift_Del p.G154Afs*5 0.42 TCGA-B6-A0RL-01 5 140789195 140789195 G A PCDHGB6 Missense_Mutation p.A476T 0.22 deleterious(0) probably_damaging(1) TCGA-B6-A0RL-01 5 145383714 145383714 G A SH3RF2 Missense_Mutation p.E248K 0.34 deleterious(0.01) possibly_damaging(0.851) TCGA-B6-A0RL-01 5 175812286 175812286 G A NOP16 Missense_Mutation p.T110I 0.40 tolerated(0.21) probably_damaging(0.98) TCGA-B6-A0RL-01 5 179393927 179393927 G A RNF130 Silent p.L343L 0.09 TCGA-B6-A0RL-01 6 154431537 154431537 C A OPRM1 Intron 0.17 TCGA-B6-A0RL-01 7 116557813 116557813 G A CAPZA2 Silent p.S251S 0.48 TCGA-B6-A0RL-01 8 1626541 1626541 C T DLGAP2 Missense_Mutation p.A737V 0.22 tolerated(0.29) benign(0.127) TCGA-B6-A0RL-01 8 35541225 35541225 C T UNC5D Missense_Mutation p.S244L 0.08 deleterious(0.01) benign(0.166) TCGA-B6-A0RL-01 8 53852674 53852674 G A NPBWR1 Silent p.K69K 0.12 TCGA-B6-A0RL-01 8 57129964 57129964 C T CHCHD7 Silent p.I101I 0.44 TCGA-B6-A0RL-01 9 138456093 138456093 C T PAEP Missense_Mutation p.T105M 0.18 tolerated(0.24) benign(0.004) TCGA-B6-A0RL-01 X 119664034 119664034 T C CUL4B Missense_Mutation p.I857V 0.04 tolerated(0.11) benign(0.143) TCGA-B6-A0RL-01 X 154010005 154010005 G A MPP1 Missense_Mutation p.T340M 0.04 tolerated(0.26) possibly_damaging(0.735) TCGA-B6-A0RL-01 X 154444844 154444844 G A VBP1 Missense_Mutation p.V29M 0.40 tolerated(0.17) benign(0.052) TCGA-B6-A0RL-01 X 48759265 48759265 G A PQBP1 Missense_Mutation p.D80N 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-B6-A0RL-01 X 48759509 48759509 G C PQBP1 Splice_Site p.X98_splice 0.14 TCGA-B6-A0RL-01 X 48759764 48759764 G A PQBP1 Missense_Mutation p.E183K 0.10 deleterious(0.01) benign(0.012) TCGA-B6-A0RL-01 X 49768121 49768121 C T CLCN5 Intron 0.11 TCGA-B6-A0RL-01 X 54069156 54069156 G A PHF8 Silent p.A38A 0.44 TCGA-B6-A0RL-01 X 9914895 9914895 G A SHROOM2 Missense_Mutation p.R1590Q 0.11 deleterious(0) probably_damaging(0.988) TCGA-B6-A0RM-01 10 106057391 106057391 A G GSTO2 Missense_Mutation p.D175G 0.21 deleterious(0) probably_damaging(1) TCGA-B6-A0RM-01 10 14944716 14944716 T G SUV39H2 3'Flank 0.55 TCGA-B6-A0RM-01 11 120531052 120531052 G T GRIK4 Missense_Mutation p.V9L 0.19 tolerated(1) benign(0) TCGA-B6-A0RM-01 11 18738496 18738496 C T IGSF22 Missense_Mutation p.R342H 0.21 tolerated(0.5) benign(0.015) TCGA-B6-A0RM-01 11 4661784 4661784 T C OR51D1 Missense_Mutation p.I255T 0.37 deleterious(0.01) benign(0.278) TCGA-B6-A0RM-01 11 71943727 71943727 C T INPPL1 Silent p.L590L 0.20 TCGA-B6-A0RM-01 13 52676092 52676092 C T NEK5 Missense_Mutation p.R290Q 0.36 tolerated(1) benign(0.001) TCGA-B6-A0RM-01 14 60212850 60212863 AATGTATTTATAGG - RTN1 Frame_Shift_Del p.A193Gfs*21 0.39 TCGA-B6-A0RM-01 14 67675050 67675050 A G FAM71D Silent p.Q348Q 0.39 TCGA-B6-A0RM-01 14 75264488 75264488 C T YLPM1 Missense_Mutation p.P830S 0.42 probably_damaging(0.994) TCGA-B6-A0RM-01 14 77844471 77844471 A G SAMD15 Missense_Mutation p.K237R 0.14 tolerated(0.15) benign(0.405) TCGA-B6-A0RM-01 15 42143319 42143319 G A SPTBN5 Silent p.L3591L 0.38 TCGA-B6-A0RM-01 15 74181422 74181422 T A TBC1D21 Missense_Mutation p.L331I 0.38 tolerated(0.49) benign(0.016) TCGA-B6-A0RM-01 15 91436376 91436376 G T FES Missense_Mutation p.V625F 0.26 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RM-01 16 70190599 70190599 T - PDPR Frame_Shift_Del p.S821Lfs*10 0.27 TCGA-B6-A0RM-01 16 70432269 70432269 G A ST3GAL2 Silent p.A55A 0.88 TCGA-B6-A0RM-01 17 33521200 33521200 C A SLC35G3 Missense_Mutation p.A43S 0.39 tolerated(0.07) probably_damaging(0.996) TCGA-B6-A0RM-01 17 44171973 44171973 G A KANSL1 Nonsense_Mutation p.R462* 0.28 TCGA-B6-A0RM-01 17 73733725 73733725 G A ITGB4 Silent p.K740K 0.40 TCGA-B6-A0RM-01 18 13885539 13885539 C T MC2R 5'UTR 0.42 TCGA-B6-A0RM-01 19 37677742 37677742 C T ZNF585B Missense_Mutation p.E233K 0.36 tolerated(0.08) benign(0.122) TCGA-B6-A0RM-01 19 40197252 40197252 C T LGALS14 Missense_Mutation p.P40S 0.38 tolerated(0.4) benign(0.055) TCGA-B6-A0RM-01 19 54803118 54803118 C T LILRA3 Missense_Mutation p.V187M 0.39 tolerated(0.09) possibly_damaging(0.698) TCGA-B6-A0RM-01 1 115829015 115829015 C T NGF Silent p.S134S 0.45 TCGA-B6-A0RM-01 1 155583968 155583968 G T MSTO1 Missense_Mutation p.M539I 0.25 tolerated(0.05) benign(0.004) TCGA-B6-A0RM-01 1 155583969 155583969 G T MSTO1 Missense_Mutation p.D540Y 0.25 deleterious(0.01) possibly_damaging(0.492) TCGA-B6-A0RM-01 1 182442910 182442910 G A RGSL1 Missense_Mutation p.V222I 0.34 tolerated(0.65) benign(0.001) TCGA-B6-A0RM-01 1 211486788 211486788 G A RCOR3 Missense_Mutation p.R447Q 0.04 tolerated(0.6) benign(0.001) TCGA-B6-A0RM-01 1 45221633 45221633 G A KIF2C Silent p.R264R 0.48 TCGA-B6-A0RM-01 1 46080700 46080700 C T NASP Missense_Mutation p.A561V 0.37 deleterious(0) probably_damaging(1) TCGA-B6-A0RM-01 22 38508176 38508176 A - PLA2G6 Frame_Shift_Del p.S805Hfs*13 0.27 TCGA-B6-A0RM-01 22 40045729 40045729 C T CACNA1I Silent p.S597S 0.14 TCGA-B6-A0RM-01 2 191524294 191524294 C - NAB1 Frame_Shift_Del p.A131Vfs*20 0.28 TCGA-B6-A0RM-01 3 192988414 192988414 G A HRASLS Missense_Mutation p.V248I 0.38 tolerated(0.86) benign(0.062) TCGA-B6-A0RM-01 3 40433475 40433475 A G ENTPD3 Intron 0.35 TCGA-B6-A0RM-01 3 45812813 45812813 G A SLC6A20 Silent p.I277I 0.39 TCGA-B6-A0RM-01 5 56168719 56168719 C T MAP3K1 Nonsense_Mutation p.Q525* 0.39 TCGA-B6-A0RM-01 5 56184097 56184097 T A MAP3K1 Missense_Mutation p.S1434R 0.40 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RM-01 5 58147186 58147186 G A RAB3C 3'UTR 0.20 TCGA-B6-A0RM-01 6 17777584 17777584 G A KIF13A Missense_Mutation p.A1365V 0.37 deleterious(0.02) probably_damaging(0.965) TCGA-B6-A0RN-01 10 75276172 75276172 C G USP54 Missense_Mutation p.G1338R 0.40 tolerated(0.16) benign(0.015) TCGA-B6-A0RN-01 12 25307302 25307302 G T CASC1 Missense_Mutation p.T130K 0.35 tolerated(0.62) benign(0.044) TCGA-B6-A0RN-01 15 39883768 39883768 A G THBS1 Missense_Mutation p.M826V 0.41 tolerated(0.44) benign(0.071) TCGA-B6-A0RN-01 15 75647320 75647320 G A NEIL1 Missense_Mutation p.R373Q 0.49 tolerated_low_confidence(0.4) benign(0.003) TCGA-B6-A0RN-01 15 85341673 85341673 G T ZNF592 Missense_Mutation p.V902L 0.41 tolerated(0.85) benign(0) TCGA-B6-A0RN-01 16 67100598 67100598 C T CBFB Missense_Mutation p.A99V 0.64 tolerated(0.16) benign(0.15) TCGA-B6-A0RN-01 17 62018350 62018350 G A SCN4A Silent p.D1764D 0.43 TCGA-B6-A0RN-01 19 42342215 42342215 C T LYPD4 Missense_Mutation p.R111Q 0.50 deleterious(0) probably_damaging(0.963) TCGA-B6-A0RN-01 19 42820840 42820840 C A TMEM145 Missense_Mutation p.L252I 0.39 tolerated(0.21) benign(0.101) TCGA-B6-A0RN-01 19 7605077 7605077 C T PNPLA6 Silent p.C208C 0.28 TCGA-B6-A0RN-01 1 197059075 197059075 C T ASPM Silent p.L3323L 0.42 TCGA-B6-A0RN-01 1 243289876 243289876 G A CEP170 Missense_Mutation p.L1544F 0.17 deleterious_low_confidence(0.05) benign(0.172) TCGA-B6-A0RN-01 1 2453186 2453186 T C PANK4 Missense_Mutation p.K60E 0.40 tolerated(0.63) benign(0.063) TCGA-B6-A0RN-01 1 59248498 59248498 T - JUN Frame_Shift_Del p.Q82Rfs*22 0.33 TCGA-B6-A0RN-01 1 89521803 89521805 CTT - GBP1 In_Frame_Del p.E421del 0.27 TCGA-B6-A0RN-01 1 91727807 91727807 A G HFM1 Missense_Mutation p.V1410A 0.35 tolerated_low_confidence(0.1) benign(0.003) TCGA-B6-A0RN-01 1 93131496 93131496 T - EVI5 Frame_Shift_Del p.K448Nfs*16 0.30 TCGA-B6-A0RN-01 22 36697634 36697635 CT GAGAA MYH9 In_Frame_Ins p.E859delinsVL 0.71 TCGA-B6-A0RN-01 2 238461047 238461047 C T MLPH Silent p.N581N 0.37 TCGA-B6-A0RN-01 3 149243909 149243909 C A WWTR1 Silent p.G303G 0.26 TCGA-B6-A0RN-01 3 176765098 176765098 C A TBL1XR1 Missense_Mutation p.G285V 0.46 deleterious(0.04) probably_damaging(0.995) TCGA-B6-A0RN-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.44 tolerated(0.11) possibly_damaging(0.529) TCGA-B6-A0RN-01 3 48416853 48416853 C T FBXW12 Missense_Mutation p.T99M 0.20 tolerated(0.15) benign(0.002) TCGA-B6-A0RN-01 4 170321765 170321765 G A NEK1 Silent p.C1207C 0.41 TCGA-B6-A0RN-01 4 9836553 9836553 G A SLC2A9 Silent p.V457V 0.45 TCGA-B6-A0RN-01 5 140857180 140857180 A G PCDHGC3 Silent p.Q499Q 0.37 TCGA-B6-A0RN-01 5 161522529 161522529 G A GABRG2 Missense_Mutation p.M96I 0.31 tolerated(1) probably_damaging(0.98) TCGA-B6-A0RN-01 5 180486582 180486582 G A BTNL9 Missense_Mutation p.R443H 0.29 tolerated(0.08) benign(0.284) TCGA-B6-A0RN-01 7 100203382 100203382 C G PCOLCE Silent p.A224A 0.35 TCGA-B6-A0RN-01 7 149489284 149489284 C T SSPO RNA 0.32 TCGA-B6-A0RN-01 8 10755750 10755750 G A XKR6 Silent p.A546A 0.26 TCGA-B6-A0RN-01 8 55533670 55533670 C T RP1 Silent p.F48F 0.37 TCGA-B6-A0RN-01 9 6252949 6252949 T G IL33 Missense_Mutation p.Y143D 0.46 deleterious(0.02) probably_damaging(0.986) TCGA-B6-A0RN-01 9 98215818 98215818 C T PTCH1 Missense_Mutation p.V1131M 0.37 deleterious(0.04) possibly_damaging(0.582) TCGA-B6-A0RN-01 X 50094618 50094618 A T CCNB3 Missense_Mutation p.E1368D 0.42 deleterious(0) probably_damaging(0.998) TCGA-B6-A0RN-01 X 51486717 51486717 G A GSPT2 5'UTR 0.67 TCGA-B6-A0RN-01 X 51488514 51488514 A G GSPT2 Missense_Mutation p.K598E 0.33 tolerated(0.35) benign(0.116) TCGA-B6-A0RO-01 10 106974227 106974227 C T SORCS3 Silent p.C801C 0.16 TCGA-B6-A0RO-01 10 135116465 135116465 G A TUBGCP2 5'UTR 0.21 TCGA-B6-A0RO-01 10 15145342 15145342 G A RPP38 Missense_Mutation p.R10Q 0.12 tolerated(0.06) possibly_damaging(0.881) TCGA-B6-A0RO-01 10 90332770 90332772 TCT - RNLS In_Frame_Del p.R138_D139delinsS 0.20 TCGA-B6-A0RO-01 11 55136222 55136222 G T OR4A15 Missense_Mutation p.R288M 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B6-A0RO-01 11 59245446 59245446 C T OR4D10 Missense_Mutation p.H182Y 0.46 tolerated(0.23) benign(0.003) TCGA-B6-A0RO-01 11 61093120 61093120 C T DDB1 Missense_Mutation p.G242D 0.39 deleterious(0) possibly_damaging(0.902) TCGA-B6-A0RO-01 11 94040778 94040788 CTCTTCGCCAG - FOLR4 Frame_Shift_Del p.F219Cfs*? 0.21 TCGA-B6-A0RO-01 12 132498069 132498069 C T EP400 Missense_Mutation p.H1216Y 0.34 unknown(0) TCGA-B6-A0RO-01 12 47629963 47629963 T A PCED1B Missense_Mutation p.F373I 0.15 deleterious(0.01) probably_damaging(0.981) TCGA-B6-A0RO-01 12 56604349 56604349 G A RNF41 Missense_Mutation p.P32S 0.18 tolerated(0.28) probably_damaging(0.998) TCGA-B6-A0RO-01 12 77449886 77449886 T C E2F7 Missense_Mutation p.R40G 0.18 deleterious(0) probably_damaging(0.987) TCGA-B6-A0RO-01 13 114138226 114138226 G A DCUN1D2 Missense_Mutation p.S50L 0.14 tolerated(1) benign(0) TCGA-B6-A0RO-01 13 51922387 51922387 C A SERPINE3 Missense_Mutation p.L247M 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-B6-A0RO-01 14 101532265 101532265 T A MIR410 RNA 0.26 TCGA-B6-A0RO-01 14 24631510 24631510 G T IRF9 Missense_Mutation p.D53Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-B6-A0RO-01 14 69520662 69520662 T A DCAF5 Missense_Mutation p.H914L 0.26 tolerated_low_confidence(0.27) benign(0.062) TCGA-B6-A0RO-01 15 89744112 89744112 A G ABHD2 3'UTR 0.29 TCGA-B6-A0RO-01 17 15983302 15983302 T A NCOR1 Silent p.P1159P 0.20 TCGA-B6-A0RO-01 17 18539605 18539605 C T TBC1D28 3'UTR 0.12 TCGA-B6-A0RO-01 17 38209888 38209888 G C MED24 Intron 0.18 TCGA-B6-A0RO-01 19 35999142 35999142 C T DMKN Intron 0.27 TCGA-B6-A0RO-01 1 15708607 15708607 C T FHAD1 Missense_Mutation p.A582V 0.61 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RO-01 1 16257012 16257012 T A SPEN Nonsense_Mutation p.L1426* 0.69 TCGA-B6-A0RO-01 1 184680975 184680975 C T EDEM3 Missense_Mutation p.D525N 0.06 tolerated(0.16) benign(0.012) TCGA-B6-A0RO-01 1 200826879 200826879 A G CAMSAP2 Intron 0.16 TCGA-B6-A0RO-01 1 207086340 207086341 - T FAIM3 Frame_Shift_Ins p.W141Mfs*59 0.41 TCGA-B6-A0RO-01 1 237608771 237608771 G A RYR2 Missense_Mutation p.R414H 0.51 benign(0.016) TCGA-B6-A0RO-01 1 247695646 247695646 G A OR2C3 Silent p.L56L 0.51 TCGA-B6-A0RO-01 22 46758901 46758901 G A CELSR1 3'UTR 0.12 TCGA-B6-A0RO-01 22 46758911 46758911 G A CELSR1 3'UTR 0.12 TCGA-B6-A0RO-01 2 179585182 179585182 G A TTN Silent p.V7769V 0.25 TCGA-B6-A0RO-01 2 181925537 181925537 C T UBE2E3 Missense_Mutation p.P175L 0.20 deleterious(0) probably_damaging(1) TCGA-B6-A0RO-01 3 152554206 152554206 G A P2RY1 Missense_Mutation p.R212Q 0.20 tolerated(0.18) benign(0.278) TCGA-B6-A0RO-01 3 178936074 178936074 C G PIK3CA Missense_Mutation p.P539R 0.43 deleterious(0) possibly_damaging(0.796) TCGA-B6-A0RO-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-B6-A0RO-01 4 13612609 13612609 G C BOD1L1 Nonsense_Mutation p.Y480* 0.04 TCGA-B6-A0RO-01 4 25005663 25005663 G AA LGI2 Frame_Shift_Ins p.L350Ffs*6 0.22 TCGA-B6-A0RO-01 5 157178496 157178496 T C LSM11 Missense_Mutation p.C183R 0.40 deleterious(0) probably_damaging(0.995) TCGA-B6-A0RO-01 5 167927622 167927622 G C RARS Missense_Mutation p.E283D 0.35 tolerated(1) benign(0.013) TCGA-B6-A0RO-01 6 44241139 44241139 C T TMEM151B Nonsense_Mutation p.Q158* 0.20 TCGA-B6-A0RO-01 6 49580246 49580246 A G RHAG Missense_Mutation p.V270A 0.41 tolerated(0.11) possibly_damaging(0.464) TCGA-B6-A0RO-01 6 52103709 52103709 G C IL17F Missense_Mutation p.L25V 0.07 deleterious(0.01) benign(0.249) TCGA-B6-A0RO-01 8 102570699 102570699 C T GRHL2 Nonsense_Mutation p.R113* 0.28 TCGA-B6-A0RO-01 9 115167969 115167969 G C HSDL2 Missense_Mutation p.A83P 0.23 tolerated(0.25) benign(0.067) TCGA-B6-A0RO-01 9 17486986 17486986 G A CNTLN Splice_Site p.X1348_splice 0.23 TCGA-B6-A0RO-01 9 84547993 84547993 G A RP11-383M4.6 Intron 0.24 TCGA-B6-A0RP-01 11 76062566 76062566 G A PRKRIR Missense_Mutation p.A543V 0.32 tolerated(0.06) benign(0.242) TCGA-B6-A0RP-01 12 122656817 122656817 G A IL31 3'UTR 0.15 TCGA-B6-A0RP-01 12 15822744 15822744 C A EPS8 Missense_Mutation p.V74F 0.30 deleterious(0) possibly_damaging(0.903) TCGA-B6-A0RP-01 12 48105413 48105413 T A ENDOU Intron 0.36 TCGA-B6-A0RP-01 12 57989795 57989795 A G PIP4K2C Missense_Mutation p.N165S 0.18 deleterious(0) benign(0.048) TCGA-B6-A0RP-01 12 72008334 72008334 T A ZFC3H1 Missense_Mutation p.N1836I 0.21 deleterious(0.01) possibly_damaging(0.901) TCGA-B6-A0RP-01 13 39435627 39435627 C T FREM2 Missense_Mutation p.R2527C 0.41 deleterious(0) possibly_damaging(0.877) TCGA-B6-A0RP-01 15 22709627 22709627 C T AC116165.1 5'Flank 0.25 TCGA-B6-A0RP-01 16 30583669 30583669 C T ZNF688 5'UTR 0.49 TCGA-B6-A0RP-01 16 55857523 55857523 C A CES1 Missense_Mutation p.A160S 0.14 deleterious(0.02) possibly_damaging(0.461) TCGA-B6-A0RP-01 17 36719585 36719585 G C SRCIN1 Missense_Mutation p.N238K 0.40 deleterious(0) probably_damaging(0.998) TCGA-B6-A0RP-01 19 55666131 55666131 T C TNNI3 Missense_Mutation p.K117R 0.31 tolerated(0.09) benign(0.004) TCGA-B6-A0RP-01 19 9056515 9056515 C T MUC16 Missense_Mutation p.G10311S 0.26 benign(0.007) TCGA-B6-A0RP-01 1 29652316 29652316 C T PTPRU 3'Flank 0.42 TCGA-B6-A0RP-01 1 32768220 32768220 A G HDAC1 Splice_Site p.X17_splice 0.41 TCGA-B6-A0RP-01 1 55119090 55119090 G T MROH7 Missense_Mutation p.G164V 0.24 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-B6-A0RP-01 2 179435537 179435537 G A TTN Missense_Mutation p.P25108S 0.11 TCGA-B6-A0RP-01 2 202141634 202141634 G T CASP8 Nonsense_Mutation p.E308* 0.27 TCGA-B6-A0RP-01 2 202488850 202488850 G A TMEM237 3'UTR 0.40 TCGA-B6-A0RP-01 3 130159662 130159662 G A COL6A5 Silent p.S2160S 0.63 TCGA-B6-A0RP-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.66 deleterious(0.01) probably_damaging(1) TCGA-B6-A0RP-01 3 50357328 50357328 C T HYAL2 Missense_Mutation p.R198Q 0.08 deleterious(0) probably_damaging(1) TCGA-B6-A0RP-01 4 8401327 8401327 T A ACOX3 Missense_Mutation p.M277L 0.38 tolerated(0.12) benign(0) TCGA-B6-A0RP-01 7 151716786 151716786 G A GALNTL5 Missense_Mutation p.R411H 0.30 deleterious(0.01) benign(0.001) TCGA-B6-A0RP-01 7 151845739 151845739 C A KMT2C Missense_Mutation p.D4425Y 0.29 probably_damaging(0.999) TCGA-B6-A0RP-01 7 44155818 44155818 C T POLD2 Silent p.T305T 0.14 TCGA-B6-A0RP-01 8 86393056 86393056 G A CA2 3'UTR 0.20 TCGA-B6-A0RP-01 9 114518627 114518627 T C C9orf84 Silent p.E216E 0.10 TCGA-B6-A0RP-01 9 377199 377199 G T DOCK8 Missense_Mutation p.A810S 0.42 tolerated(0.34) possibly_damaging(0.812) TCGA-B6-A0RP-01 X 48823411 48823411 C T KCND1 Silent p.V408V 0.51 TCGA-B6-A0RQ-01 10 118196254 118196254 T A PNLIPRP3 Nonsense_Mutation p.C27* 0.10 TCGA-B6-A0RQ-01 10 131565093 131565093 C T MGMT Silent p.S183S 0.14 TCGA-B6-A0RQ-01 10 17641399 17641399 T G PTPLA Missense_Mutation p.E165D 0.04 deleterious(0.02) possibly_damaging(0.481) TCGA-B6-A0RQ-01 10 61831347 61831347 A G ANK3 Missense_Mutation p.F3098L 0.05 possibly_damaging(0.899) TCGA-B6-A0RQ-01 10 73558966 73558966 G A CDH23 Missense_Mutation p.E145K 0.08 tolerated(0.12) benign(0.18) TCGA-B6-A0RQ-01 10 74096381 74096381 C T DNAJB12 Missense_Mutation p.E337K 0.06 tolerated(0.96) benign(0.005) TCGA-B6-A0RQ-01 10 85909815 85909815 G A GHITM Silent p.V199V 0.07 TCGA-B6-A0RQ-01 11 117075033 117075033 C A TAGLN Silent p.A188A 0.12 TCGA-B6-A0RQ-01 11 20117222 20117222 C T NAV2 Missense_Mutation p.S2033F 0.07 deleterious(0.05) possibly_damaging(0.602) TCGA-B6-A0RQ-01 11 30352494 30352494 G T ARL14EP 5'UTR 0.12 TCGA-B6-A0RQ-01 11 66299233 66299233 C T BBS1 Intron 0.11 TCGA-B6-A0RQ-01 12 53205566 53205566 C T KRT4 Missense_Mutation p.V220M 0.08 deleterious(0) benign(0.424) TCGA-B6-A0RQ-01 12 86374203 86374203 G C MGAT4C Missense_Mutation p.L101V 0.08 deleterious(0) probably_damaging(0.997) TCGA-B6-A0RQ-01 12 89814994 89814994 T C POC1B Missense_Mutation p.D458G 0.08 deleterious(0.04) benign(0.009) TCGA-B6-A0RQ-01 13 21370351 21370351 T C XPO4 Silent p.Q887Q 0.09 TCGA-B6-A0RQ-01 14 23899017 23899017 G A MYH7 Missense_Mutation p.R369W 0.12 deleterious(0) probably_damaging(0.998) TCGA-B6-A0RQ-01 15 43701129 43701129 C T TP53BP1 Missense_Mutation p.G1856R 0.07 deleterious(0) probably_damaging(1) TCGA-B6-A0RQ-01 16 15703568 15703568 C T KIAA0430 Missense_Mutation p.E1256K 0.08 deleterious(0) probably_damaging(0.998) TCGA-B6-A0RQ-01 16 2134569 2134569 C G TSC2 Missense_Mutation p.S1449C 0.19 tolerated(0.12) benign(0) TCGA-B6-A0RQ-01 16 61859050 61859050 C T CDH8 Missense_Mutation p.R234K 0.04 deleterious(0) probably_damaging(0.998) TCGA-B6-A0RQ-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.09 TCGA-B6-A0RQ-01 17 39659616 39659616 G A KRT13 Silent p.L220L 0.09 TCGA-B6-A0RQ-01 17 4496467 4496467 G T SMTNL2 Splice_Site p.X244_splice 0.38 TCGA-B6-A0RQ-01 17 45758035 45758035 G A KPNB1 Silent p.%3D 0.06 TCGA-B6-A0RQ-01 17 6380354 6380354 G A PITPNM3 Silent p.L360L 0.11 TCGA-B6-A0RQ-01 19 31039953 31039953 G A ZNF536 Missense_Mutation p.E1143K 0.09 deleterious_low_confidence(0.01) benign(0.046) TCGA-B6-A0RQ-01 19 55363677 55363677 C T KIR3DL2 Missense_Mutation p.R99C 0.20 tolerated(0.07) benign(0.011) TCGA-B6-A0RQ-01 19 6166002 6166002 G A ACSBG2 Silent p.K238K 0.05 TCGA-B6-A0RQ-01 1 180165869 180165869 A G QSOX1 Silent p.T647T 0.12 TCGA-B6-A0RQ-01 1 215940026 215940026 C T USH2A Missense_Mutation p.E3682K 0.06 benign(0.066) TCGA-B6-A0RQ-01 1 228559663 228559663 C T OBSCN Missense_Mutation p.P8019S 0.14 probably_damaging(0.994) TCGA-B6-A0RQ-01 1 237881761 237881761 G A RYR2 Splice_Site p.X3499_splice 0.05 TCGA-B6-A0RQ-01 1 26610850 26610850 C T UBXN11 Intron 0.13 TCGA-B6-A0RQ-01 1 68954121 68954121 T - DEPDC1 Frame_Shift_Del p.Q219Hfs*3 0.13 TCGA-B6-A0RQ-01 20 37546989 37546989 G A PPP1R16B Missense_Mutation p.V462M 0.13 tolerated(0.29) benign(0.02) TCGA-B6-A0RQ-01 21 31914092 31914092 G A KRTAP19-6 Silent p.L21L 0.04 TCGA-B6-A0RQ-01 21 45064190 45064190 C T HSF2BP Missense_Mutation p.D91N 0.07 deleterious(0) benign(0.434) TCGA-B6-A0RQ-01 22 43010816 43010816 C T POLDIP3 Silent p.A16A 0.11 TCGA-B6-A0RQ-01 2 11053551 11053551 G A KCNF1 Silent p.V333V 0.10 TCGA-B6-A0RQ-01 2 170371212 170371212 G C KLHL41 Silent p.S413S 0.10 TCGA-B6-A0RQ-01 2 197208486 197208486 C T HECW2 Missense_Mutation p.E99K 0.06 deleterious(0) probably_damaging(0.982) TCGA-B6-A0RQ-01 3 178936083 178936083 A G PIK3CA Missense_Mutation p.E542G 0.12 tolerated(0.07) benign(0.286) TCGA-B6-A0RQ-01 3 62535595 62535595 G A CADPS Missense_Mutation p.A650V 0.09 deleterious(0.03) unknown(0) TCGA-B6-A0RQ-01 4 36134857 36134857 T C ARAP2 Missense_Mutation p.T1140A 0.06 deleterious(0) probably_damaging(0.997) TCGA-B6-A0RQ-01 5 132084048 132084048 T C CCNI2 Missense_Mutation p.C147R 0.11 tolerated(0.5) benign(0.004) TCGA-B6-A0RQ-01 5 139876827 139876827 C G ANKHD1 Missense_Mutation p.Q990E 0.12 unknown(0) TCGA-B6-A0RQ-01 6 123786098 123786098 G A TRDN Missense_Mutation p.P295L 0.05 tolerated_low_confidence(0.26) benign(0.011) TCGA-B6-A0RQ-01 6 131948535 131948535 C A MED23 Splice_Site p.X53_splice 0.06 TCGA-B6-A0RQ-01 6 166918085 166918085 C T RPS6KA2 Missense_Mutation p.E167K 0.04 deleterious(0.03) benign(0.347) TCGA-B6-A0RQ-01 7 55273279 55273279 C T EGFR Missense_Mutation p.A1201V 0.07 deleterious(0.01) possibly_damaging(0.817) TCGA-B6-A0RQ-01 7 6545509 6545509 C A GRID2IP Silent p.L858L 0.10 TCGA-B6-A0RQ-01 8 103289290 103289290 G A UBR5 Missense_Mutation p.S2140F 0.07 deleterious(0.01) probably_damaging(0.915) TCGA-B6-A0RQ-01 8 141381154 141381154 G A TRAPPC9 Silent p.I518I 0.07 TCGA-B6-A0RQ-01 8 26365666 26365666 C G PNMA2 Missense_Mutation p.K202N 0.11 deleterious(0) probably_damaging(0.994) TCGA-B6-A0RQ-01 8 97797165 97797165 C T CPQ Missense_Mutation p.L14F 0.05 tolerated_low_confidence(0.17) benign(0.015) TCGA-B6-A0RQ-01 9 97082711 97082711 C T NUTM2F Missense_Mutation p.E383K 0.09 tolerated(0.08) probably_damaging(0.984) TCGA-B6-A0RQ-01 X 15301643 15301643 A G ASB11 Missense_Mutation p.F319S 0.03 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RT-01 10 90676508 90676508 G C STAMBPL1 Missense_Mutation p.M325I 0.07 deleterious(0.02) benign(0.003) TCGA-B6-A0RT-01 11 109294874 109294874 G T C11orf87 Missense_Mutation p.S172I 0.09 deleterious_low_confidence(0.01) benign(0.295) TCGA-B6-A0RT-01 11 12262608 12262608 G A MICAL2 Missense_Mutation p.G746S 0.04 tolerated(0.75) possibly_damaging(0.698) TCGA-B6-A0RT-01 11 430133 430133 C G ANO9 Missense_Mutation p.D241H 0.13 deleterious(0.04) benign(0.185) TCGA-B6-A0RT-01 11 45945056 45945056 T G GYLTL1B Missense_Mutation p.H106Q 0.12 tolerated(0.05) benign(0.024) TCGA-B6-A0RT-01 11 64715283 64715283 T C C11orf85 Missense_Mutation p.I120V 0.09 tolerated(0.59) benign(0.001) TCGA-B6-A0RT-01 12 110353240 110353240 A T TCHP Silent p.A451A 0.07 TCGA-B6-A0RT-01 12 57881760 57881760 T G MARS 5'UTR 0.22 TCGA-B6-A0RT-01 12 57881761 57881761 G T MARS 5'UTR 0.22 TCGA-B6-A0RT-01 12 69129042 69129042 A G NUP107 Missense_Mutation p.D807G 0.09 tolerated(0.18) benign(0.123) TCGA-B6-A0RT-01 12 7175768 7175768 C G C1S Missense_Mutation p.H402D 0.03 tolerated(0.09) benign(0.063) TCGA-B6-A0RT-01 13 111132707 111132707 G C COL4A2 Missense_Mutation p.D910H 0.09 benign(0.103) TCGA-B6-A0RT-01 13 113333710 113333710 C T C13orf35 Missense_Mutation p.A6V 0.16 deleterious_low_confidence(0) benign(0) TCGA-B6-A0RT-01 14 63447746 63447746 G A KCNH5 Silent p.I262I 0.06 TCGA-B6-A0RT-01 16 11035476 11035476 G A DEXI 3'UTR 0.27 TCGA-B6-A0RT-01 16 23637710 23637710 T A PALB2 Silent p.S865S 0.10 TCGA-B6-A0RT-01 17 33501311 33501311 T A UNC45B Silent p.G629G 0.09 TCGA-B6-A0RT-01 17 39086243 39086243 C T KRT23 Silent p.E195E 0.05 TCGA-B6-A0RT-01 17 61619707 61619707 G - KCNH6 Frame_Shift_Del p.A688Qfs*99 0.16 TCGA-B6-A0RT-01 17 7976194 7976194 C A ALOX12B Missense_Mutation p.Q667H 0.04 tolerated(0.09) benign(0.01) TCGA-B6-A0RT-01 19 12574819 12574819 A G ZNF709 Silent p.S639S 0.05 TCGA-B6-A0RT-01 19 17186213 17186213 C G HAUS8 Missense_Mutation p.R7P 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-B6-A0RT-01 19 48480706 48480706 G C BSPH1 Missense_Mutation p.I60M 0.03 deleterious(0.02) possibly_damaging(0.542) TCGA-B6-A0RT-01 19 56423854 56423854 G C NLRP13 Nonsense_Mutation p.Y443* 0.11 TCGA-B6-A0RT-01 19 8173076 8173076 G T FBN3 Missense_Mutation p.N1555K 0.09 deleterious(0) possibly_damaging(0.614) TCGA-B6-A0RT-01 1 109867556 109867556 T G SORT1 Missense_Mutation p.Y600S 0.05 tolerated(0.12) probably_damaging(0.977) TCGA-B6-A0RT-01 1 145295515 145295515 G C NBPF10 Missense_Mutation p.E90Q 0.05 possibly_damaging(0.474) TCGA-B6-A0RT-01 1 147231066 147231066 C G GJA5 Missense_Mutation p.G94A 0.11 deleterious(0.03) possibly_damaging(0.89) TCGA-B6-A0RT-01 1 156873784 156873784 C A PEAR1 Missense_Mutation p.N22K 0.08 deleterious(0.04) benign(0.043) TCGA-B6-A0RT-01 1 161143618 161143618 C G B4GALT3 Intron 0.06 TCGA-B6-A0RT-01 1 181735686 181735686 T G CACNA1E Missense_Mutation p.L1607R 0.03 deleterious(0) probably_damaging(0.928) TCGA-B6-A0RT-01 1 182353670 182353670 T G GLUL Missense_Mutation p.Q331P 0.06 deleterious(0.03) benign(0.356) TCGA-B6-A0RT-01 1 228113112 228113112 C A WNT9A Missense_Mutation p.Q68H 0.21 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RT-01 1 234565071 234565071 C A TARBP1 Splice_Site p.X958_splice 0.15 TCGA-B6-A0RT-01 1 236645876 236645876 A G EDARADD Missense_Mutation p.E192G 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-B6-A0RT-01 1 25785067 25785067 G C TMEM57 Missense_Mutation p.D280H 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-B6-A0RT-01 1 55619932 55619932 G T USP24 Missense_Mutation p.L558M 0.08 tolerated(0.09) possibly_damaging(0.905) TCGA-B6-A0RT-01 20 34242614 34242614 G T RBM12 Missense_Mutation p.P211T 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-B6-A0RT-01 20 3721471 3721471 C T HSPA12B Missense_Mutation p.P18L 0.11 tolerated_low_confidence(0.27) possibly_damaging(0.741) TCGA-B6-A0RT-01 20 44697197 44697197 C G NCOA5 Missense_Mutation p.R149T 0.04 deleterious(0.03) possibly_damaging(0.466) TCGA-B6-A0RT-01 22 21156298 21156298 C T PI4KA Missense_Mutation p.E563K 0.08 deleterious(0) probably_damaging(0.93) TCGA-B6-A0RT-01 22 24580843 24580843 C A SUSD2 Silent p.P239P 0.08 TCGA-B6-A0RT-01 2 149522638 149522638 G C EPC2 Missense_Mutation p.E355Q 0.05 tolerated(0.57) possibly_damaging(0.482) TCGA-B6-A0RT-01 2 170034496 170034496 C G LRP2 Missense_Mutation p.D3404H 0.04 probably_damaging(0.934) TCGA-B6-A0RT-01 2 32927958 32927958 C A TTC27 Silent p.R402R 0.05 TCGA-B6-A0RT-01 3 172096108 172096108 A T FNDC3B Missense_Mutation p.R1019S 0.05 deleterious(0) possibly_damaging(0.874) TCGA-B6-A0RT-01 3 38888190 38888190 C G SCN11A Missense_Mutation p.D1791H 0.10 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-B6-A0RT-01 3 65367670 65367670 G C MAGI1 Missense_Mutation p.I861M 0.06 tolerated(0.18) probably_damaging(0.972) TCGA-B6-A0RT-01 4 122800879 122800879 C A TRPC3 3'UTR 0.07 TCGA-B6-A0RT-01 4 48517212 48517212 T G FRYL Missense_Mutation p.E2590D 0.05 tolerated_low_confidence(1) benign(0) TCGA-B6-A0RT-01 6 127911394 127911394 C T C6orf58 Silent p.F279F 0.04 TCGA-B6-A0RT-01 6 133032977 133032977 C T VNN1 Missense_Mutation p.G71D 0.05 deleterious(0.03) benign(0.134) TCGA-B6-A0RT-01 6 138892872 138892872 C G NHSL1 Missense_Mutation p.W59C 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-B6-A0RT-01 6 142396797 142396797 T G NMBR Missense_Mutation p.E387D 0.08 tolerated(0.08) benign(0.037) TCGA-B6-A0RT-01 6 25726587 25726587 C A HIST1H2AA Nonsense_Mutation p.E57* 0.09 TCGA-B6-A0RT-01 6 42672156 42672156 T A PRPH2 Missense_Mutation p.S259C 0.07 deleterious(0.05) possibly_damaging(0.525) TCGA-B6-A0RT-01 6 93982024 93982024 A T EPHA7 Missense_Mutation p.Y481N 0.06 deleterious(0) probably_damaging(0.932) TCGA-B6-A0RT-01 7 92838160 92838160 C G HEPACAM2 Missense_Mutation p.D249H 0.04 deleterious(0.02) possibly_damaging(0.894) TCGA-B6-A0RT-01 8 22020136 22020136 T A SFTPC Missense_Mutation p.V31E 0.03 tolerated(0.53) benign(0.413) TCGA-B6-A0RT-01 8 61773636 61773636 G A CHD7 Nonsense_Mutation p.W2594* 0.07 TCGA-B6-A0RT-01 9 125512944 125512944 G A OR1L6 Missense_Mutation p.R273Q 0.05 tolerated(0.18) benign(0.061) TCGA-B6-A0RT-01 9 34401084 34401084 C G FAM219A Missense_Mutation p.D146H 0.04 deleterious(0) probably_damaging(1) TCGA-B6-A0RT-01 9 36369852 36369852 T C RNF38 Missense_Mutation p.H145R 0.04 tolerated(0.8) benign(0.02) TCGA-B6-A0RT-01 9 95219612 95219612 A C ASPN Silent p.V367V 0.07 TCGA-B6-A0RT-01 X 110644257 110644257 G A DCX Silent p.T303T 0.19 TCGA-B6-A0RT-01 X 149013768 149013768 T C MAGEA8 Missense_Mutation p.V241A 0.10 deleterious(0.04) benign(0.009) TCGA-B6-A0RT-01 X 150890415 150890415 G C FATE1 Missense_Mutation p.E128Q 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-B6-A0RT-01 X 153421895 153421895 G C OPN1LW Missense_Mutation p.A291P 0.08 tolerated(0.12) probably_damaging(0.992) TCGA-B6-A0RT-01 X 3228364 3228364 C T MXRA5 Missense_Mutation p.R2627K 0.13 deleterious(0.05) possibly_damaging(0.809) TCGA-B6-A0RT-01 X 37850328 37850328 G A CXorf27 Missense_Mutation p.R79H 0.06 tolerated(0.22) benign(0) TCGA-B6-A0RT-01 X 53106370 53106370 C T GPR173 Silent p.F189F 0.11 TCGA-B6-A0RT-01 X 53114504 53114504 G A TSPYL2 Splice_Site p.X413_splice 0.03 TCGA-B6-A0RT-01 X 54986260 54986260 C T PFKFB1 Silent p.A128A 0.06 TCGA-B6-A0RU-01 10 123988915 123988915 C T TACC2 Missense_Mutation p.H2651Y 0.40 probably_damaging(0.946) TCGA-B6-A0RU-01 10 49984993 49984993 C T WDFY4 Missense_Mutation p.S1021L 0.12 deleterious(0) probably_damaging(0.973) TCGA-B6-A0RU-01 11 118185202 118185202 A G CD3E Missense_Mutation p.D187G 0.64 deleterious(0) probably_damaging(1) TCGA-B6-A0RU-01 11 125708299 125708299 A G PATE4 Missense_Mutation p.R92G 0.39 deleterious(0.01) benign(0.011) TCGA-B6-A0RU-01 11 57582898 57582898 G A CTNND1 Missense_Mutation p.D912N 0.08 tolerated(0.12) benign(0.225) TCGA-B6-A0RU-01 11 62752124 62752124 G A SLC22A6 Silent p.V13V 0.24 TCGA-B6-A0RU-01 11 66082629 66082629 G A CD248 Nonsense_Mutation p.Q624* 0.57 TCGA-B6-A0RU-01 11 71293176 71293176 C T KRTAP5-11 3'UTR 0.50 TCGA-B6-A0RU-01 11 77910638 77910638 C A USP35 Intron 0.44 TCGA-B6-A0RU-01 12 10228222 10228222 T A CLEC1A Nonsense_Mutation p.K142* 0.05 TCGA-B6-A0RU-01 12 129558343 129558343 C A TMEM132D 3'UTR 0.31 TCGA-B6-A0RU-01 12 129558344 129558344 C A TMEM132D 3'UTR 0.31 TCGA-B6-A0RU-01 14 20586079 20586079 T C OR4K17 Missense_Mutation p.C172R 0.24 deleterious(0) probably_damaging(1) TCGA-B6-A0RU-01 14 32560757 32560757 T A ARHGAP5 Missense_Mutation p.S294R 0.29 tolerated(0.14) possibly_damaging(0.638) TCGA-B6-A0RU-01 14 74404702 74404702 T A FAM161B Missense_Mutation p.D568V 0.08 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RU-01 16 16315440 16315440 G C ABCC6 Intron 0.23 TCGA-B6-A0RU-01 17 56679891 56679891 T A TEX14 Missense_Mutation p.N472I 0.38 deleterious(0) probably_damaging(0.932) TCGA-B6-A0RU-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.40 TCGA-B6-A0RU-01 17 76490785 76490785 A C DNAH17 Missense_Mutation p.F2040V 0.50 possibly_damaging(0.844) TCGA-B6-A0RU-01 18 32954296 32954296 C A ZNF396 5'UTR 0.47 TCGA-B6-A0RU-01 19 36120515 36120515 G A RBM42 Silent p.A74A 0.45 TCGA-B6-A0RU-01 19 38160608 38160608 G A ZNF781 Nonsense_Mutation p.Q148* 0.29 TCGA-B6-A0RU-01 1 145021168 145021168 C T RP11-326G21.1 3'Flank 0.08 TCGA-B6-A0RU-01 1 181688931 181688931 A C CACNA1E Missense_Mutation p.R561S 0.09 deleterious(0.01) possibly_damaging(0.537) TCGA-B6-A0RU-01 1 237023140 237023140 G C MTR Missense_Mutation p.G654A 0.22 tolerated(0.26) benign(0.001) TCGA-B6-A0RU-01 1 244735905 244735905 A G C1orf101 Missense_Mutation p.H594R 0.04 tolerated(0.39) benign(0.001) TCGA-B6-A0RU-01 1 248737679 248737679 C G OR2T34 Missense_Mutation p.R127P 0.05 deleterious(0.01) benign(0.008) TCGA-B6-A0RU-01 1 55188450 55188450 G C TTC4 Missense_Mutation p.R191T 0.08 deleterious(0) probably_damaging(0.917) TCGA-B6-A0RU-01 20 20269354 20269354 C A C20orf26 Missense_Mutation p.N966K 0.28 tolerated(0.63) benign(0.134) TCGA-B6-A0RU-01 20 36640320 36640333 TCCTTCCAACTGAA - TTI1 Frame_Shift_Del p.I629Nfs*35 0.28 TCGA-B6-A0RU-01 22 19349295 19349295 C T HIRA Silent p.R645R 0.29 TCGA-B6-A0RU-01 22 31336819 31336819 T C MORC2 Missense_Mutation p.Y215C 0.32 deleterious(0) probably_damaging(0.999) TCGA-B6-A0RU-01 22 31867874 31867874 G C EIF4ENIF1 Silent p.P42P 0.23 TCGA-B6-A0RU-01 22 38694855 38694855 C T CSNK1E Missense_Mutation p.R274H 0.50 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-B6-A0RU-01 2 90211966 90211966 G A IGKV3D-11 Missense_Mutation p.G20R 0.35 deleterious(0.03) benign(0.084) TCGA-B6-A0RU-01 3 113166914 113166914 G T SPICE1 Silent p.V799V 0.22 TCGA-B6-A0RU-01 3 121158894 121158894 C A POLQ Missense_Mutation p.G2445V 0.29 deleterious(0) probably_damaging(0.996) TCGA-B6-A0RU-01 3 130737545 130737545 G A ASTE1 Missense_Mutation p.R440W 0.32 deleterious(0) probably_damaging(1) TCGA-B6-A0RU-01 3 139077648 139077648 C A COPB2 Nonsense_Mutation p.E831* 0.07 TCGA-B6-A0RU-01 3 148793804 148793806 GTT - HLTF In_Frame_Del p.Q86del 0.43 TCGA-B6-A0RU-01 3 48697354 48697354 C T CELSR3 Missense_Mutation p.R905H 0.55 deleterious(0.01) probably_damaging(1) TCGA-B6-A0RU-01 3 77612343 77612343 C T ROBO2 Silent p.N531N 0.28 TCGA-B6-A0RU-01 4 113539671 113539671 A T C4orf21 Missense_Mutation p.D509E 0.36 tolerated(0.48) benign(0.04) TCGA-B6-A0RU-01 4 82074651 82074651 A T PRKG2 Intron 0.35 TCGA-B6-A0RU-01 5 140235801 140235801 G A PCDHA10 Silent p.A56A 0.52 TCGA-B6-A0RU-01 5 159656619 159656619 A C FABP6 Missense_Mutation p.M68L 0.13 tolerated(0.27) benign(0.033) TCGA-B6-A0RU-01 5 52211349 52211349 A G ITGA1 Missense_Mutation p.H638R 0.39 deleterious(0.04) probably_damaging(0.955) TCGA-B6-A0RU-01 6 144768443 144768443 C T UTRN Nonsense_Mutation p.R571* 0.46 TCGA-B6-A0RU-01 6 32713051 32713051 G C HLA-DQA2 Missense_Mutation p.E66D 0.23 deleterious(0) benign(0.362) TCGA-B6-A0RU-01 7 100686212 100686212 C T MUC17 Missense_Mutation p.P3839S 0.24 benign(0) TCGA-B6-A0RU-01 7 106877126 106877126 T A COG5 Missense_Mutation p.L651F 0.28 tolerated(0.27) benign(0.019) TCGA-B6-A0RU-01 7 95751180 95751180 C - SLC25A13 Frame_Shift_Del p.G575Dfs*22 0.28 TCGA-B6-A0RU-01 8 35608151 35608151 C A UNC5D Missense_Mutation p.P663T 0.41 tolerated(0.16) benign(0.01) TCGA-B6-A0RU-01 8 88249321 88249321 T A CNBD1 Missense_Mutation p.L251Q 0.56 deleterious(0.05) possibly_damaging(0.541) TCGA-B6-A0RU-01 9 107645435 107645435 C T ABCA1 Silent p.V102V 0.34 TCGA-B6-A0RU-01 9 112705127 112705127 G A PALM2 Missense_Mutation p.V220I 0.27 tolerated(0.3) benign(0.006) TCGA-B6-A0RU-01 9 125627869 125627869 C A RC3H2 Missense_Mutation p.V465L 0.07 tolerated(0.5) possibly_damaging(0.846) TCGA-B6-A0RU-01 9 134952894 134952907 CCAGGCTTAACAGC - MED27 Frame_Shift_Del p.L91Sfs*10 0.30 TCGA-B6-A0RU-01 X 106959960 106959960 G A TSC22D3 Intron 0.36 TCGA-B6-A0RU-01 X 134986704 134986704 T C SAGE1 Silent p.L97L 0.31 TCGA-B6-A0RU-01 X 15568080 15568080 C T BMX Missense_Mutation p.S638L 0.16 deleterious(0.02) possibly_damaging(0.9) TCGA-B6-A0RU-01 X 70674701 70674701 G A TAF1 Silent p.T1664T 0.04 TCGA-B6-A0RV-01 10 49379163 49379163 G C FRMPD2 Silent p.L1104L 0.15 TCGA-B6-A0RV-01 10 62553685 62553685 G A CDK1 Silent p.L282L 0.17 TCGA-B6-A0RV-01 11 108186737 108186737 G A ATM Splice_Site p.X2032_splice 0.26 TCGA-B6-A0RV-01 11 126073267 126073267 C T RPUSD4 3'UTR 0.31 TCGA-B6-A0RV-01 11 13721953 13721953 C T FAR1 Silent p.L93L 0.15 TCGA-B6-A0RV-01 11 8435219 8435219 C T STK33 Silent p.V389V 0.21 TCGA-B6-A0RV-01 11 9735179 9735179 C T SWAP70 Missense_Mutation p.S136L 0.23 tolerated(0.11) benign(0.003) TCGA-B6-A0RV-01 12 110832986 110832986 C T ANAPC7 Missense_Mutation p.E144K 0.20 tolerated(0.88) benign(0.014) TCGA-B6-A0RV-01 12 113386695 113386695 G A OAS3 Silent p.L353L 0.25 TCGA-B6-A0RV-01 12 46211464 46211464 C T ARID2 Nonsense_Mutation p.Q144* 0.28 TCGA-B6-A0RV-01 13 27664021 27664021 G A USP12 Missense_Mutation p.R245W 0.22 deleterious(0) possibly_damaging(0.7) TCGA-B6-A0RV-01 14 21992915 21992915 G A SALL2 Missense_Mutation p.S316L 0.29 tolerated(0.08) benign(0.185) TCGA-B6-A0RV-01 14 88983555 88983555 C G PTPN21 Missense_Mutation p.W77C 0.08 deleterious(0) probably_damaging(1) TCGA-B6-A0RV-01 15 23261911 23261911 G A GOLGA8I Silent p.E341E 0.12 TCGA-B6-A0RV-01 15 29561355 29561355 G A NDNL2 Silent p.L185L 0.20 TCGA-B6-A0RV-01 15 50791185 50791185 A T USP8 Missense_Mutation p.H1086L 0.18 deleterious(0) probably_damaging(0.96) TCGA-B6-A0RV-01 16 30393617 30393617 C G SEPT1 Missense_Mutation p.D30H 0.33 probably_damaging(0.986) TCGA-B6-A0RV-01 16 48149418 48149418 C T ABCC12 Missense_Mutation p.V633M 0.28 deleterious(0.01) possibly_damaging(0.824) TCGA-B6-A0RV-01 17 12043202 12043202 G A MAP2K4 Splice_Site p.X362_splice 0.20 TCGA-B6-A0RV-01 17 25749088 25749088 G T TBC1D3P5 RNA 0.30 TCGA-B6-A0RV-01 17 25752982 25752982 C T TBC1D3P5 Intron 0.18 TCGA-B6-A0RV-01 17 33807200 33807200 C T SLFN12L Missense_Mutation p.R10H 0.19 tolerated_low_confidence(0.29) benign(0.001) TCGA-B6-A0RV-01 17 41020257 41020257 G A AOC4P RNA 0.21 TCGA-B6-A0RV-01 17 48681624 48681624 C T CACNA1G Silent p.F1426F 0.15 TCGA-B6-A0RV-01 17 6902773 6902773 G C ALOX12 Missense_Mutation p.E265D 0.32 tolerated(0.08) benign(0.002) TCGA-B6-A0RV-01 17 7158001 7158001 G C ELP5 Missense_Mutation p.K112N 0.26 tolerated(0.05) benign(0.307) TCGA-B6-A0RV-01 18 61323001 61323001 A T SERPINB3 Missense_Mutation p.S355T 0.19 tolerated(0.59) benign(0.107) TCGA-B6-A0RV-01 19 35978269 35978269 G A KRTDAP 3'UTR 0.25 TCGA-B6-A0RV-01 19 52856956 52856956 G A ZNF610 Missense_Mutation p.V29M 0.26 deleterious(0) probably_damaging(0.995) TCGA-B6-A0RV-01 19 53057030 53057030 C G ZNF808 Nonsense_Mutation p.Y287* 0.03 TCGA-B6-A0RV-01 1 114483438 114483438 C G HIPK1 Missense_Mutation p.L145V 0.30 tolerated(0.37) benign(0.028) TCGA-B6-A0RV-01 1 182025369 182025369 G A ZNF648 3'UTR 0.23 TCGA-B6-A0RV-01 1 206658614 206658614 G A IKBKE Silent p.K529K 0.21 TCGA-B6-A0RV-01 1 21212691 21212691 C T EIF4G3 Intron 0.21 TCGA-B6-A0RV-01 1 36921913 36921913 G A MRPS15 Missense_Mutation p.R171C 0.18 deleterious(0.03) probably_damaging(0.995) TCGA-B6-A0RV-01 20 23860130 23860130 C T CST5 Missense_Mutation p.D62N 0.23 deleterious(0) possibly_damaging(0.813) TCGA-B6-A0RV-01 20 57564035 57564035 G A NELFCD Missense_Mutation p.E173K 0.27 deleterious(0) probably_damaging(0.971) TCGA-B6-A0RV-01 20 58646013 58646013 C G C20orf197 3'UTR 0.13 TCGA-B6-A0RV-01 20 62078142 62078142 G C KCNQ2 Missense_Mutation p.I115M 0.23 deleterious(0) possibly_damaging(0.585) TCGA-B6-A0RV-01 21 34003498 34003498 G A SYNJ1 Missense_Mutation p.S1549L 0.14 tolerated_low_confidence(0.18) benign(0.003) TCGA-B6-A0RV-01 2 10269010 10269010 A G RRM2 Silent p.K338K 0.21 TCGA-B6-A0RV-01 2 107042506 107042506 G A RGPD3 Missense_Mutation p.P882S 0.12 deleterious(0) benign(0.344) TCGA-B6-A0RV-01 2 133541462 133541462 C T NCKAP5 Silent p.L974L 0.19 TCGA-B6-A0RV-01 2 152406191 152406191 G C NEB Missense_Mutation p.H6670D 0.23 benign(0.117) TCGA-B6-A0RV-01 2 163128799 163128799 C G IFIH1 Missense_Mutation p.E851D 0.16 deleterious(0) possibly_damaging(0.808) TCGA-B6-A0RV-01 3 53839094 53839094 C T CACNA1D Silent p.F1910F 0.10 TCGA-B6-A0RV-01 3 9934708 9934708 C T JAGN1 Nonsense_Mutation p.Q67* 0.23 TCGA-B6-A0RV-01 4 135121057 135121057 C T PABPC4L 3'UTR 0.34 TCGA-B6-A0RV-01 4 2930220 2930220 G A ADD1 Silent p.L759L 0.20 TCGA-B6-A0RV-01 5 153065794 153065794 G C GRIA1 Missense_Mutation p.E357Q 0.16 tolerated(0.56) possibly_damaging(0.676) TCGA-B6-A0RV-01 5 446329 446329 G A EXOC3 Silent p.E3E 0.20 TCGA-B6-A0RV-01 5 7802447 7802447 C G ADCY2 Silent p.L915L 0.32 TCGA-B6-A0RV-01 6 2124947 2124947 C G GMDS Missense_Mutation p.E41Q 0.13 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-B6-A0RV-01 6 33647708 33647708 C T ITPR3 Missense_Mutation p.S1341L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-B6-A0RV-01 7 100660866 100660866 G A MUC12 Silent p.L5296L 0.14 TCGA-B6-A0RV-01 7 108524578 108524578 C G C7orf66 Silent p.V4V 0.41 TCGA-B6-A0RV-01 7 38796567 38796567 C G VPS41 Missense_Mutation p.K522N 0.36 tolerated(0.12) benign(0.046) TCGA-B6-A0RV-01 7 91712715 91712715 C G AKAP9 Missense_Mutation p.L2798V 0.36 benign(0.108) TCGA-B6-A0RV-01 8 100729551 100729551 G C VPS13B Missense_Mutation p.E2228Q 0.20 tolerated(0.17) benign(0.004) TCGA-B6-A0RV-01 8 107763172 107763172 A G OXR1 3'UTR 0.20 TCGA-B6-A0RV-01 8 107763182 107763182 C G OXR1 3'UTR 0.20 TCGA-B6-A0RV-01 8 146279625 146279625 C A C8orf33 3'UTR 0.17 TCGA-B6-A0RV-01 8 95884207 95884207 T C INTS8 Missense_Mutation p.I837T 0.16 tolerated(0.3) benign(0.011) TCGA-B6-A0RV-01 9 125289222 125289222 C T OR1N1 Silent p.A117A 0.22 TCGA-B6-A0RV-01 9 133750254 133750254 G C ABL1 Splice_Site p.X381_splice 0.26 TCGA-B6-A0RV-01 9 90535186 90535186 G C SPATA31C1 RNA 0.26 TCGA-B6-A0RV-01 X 71358727 71358727 C T NHSL2 Silent p.V443V 0.20 TCGA-B6-A0WS-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.20 TCGA-B6-A0WS-01 11 5221911 5221911 A G OR51V1 Missense_Mutation p.M7T 0.23 tolerated_low_confidence(0.09) benign(0.042) TCGA-B6-A0WS-01 11 62603453 62603453 T A WDR74 Nonsense_Mutation p.K117* 0.21 TCGA-B6-A0WS-01 12 109895450 109895450 T G KCTD10 Missense_Mutation p.K171T 0.25 tolerated(0.05) probably_damaging(0.925) TCGA-B6-A0WS-01 15 41476215 41476215 T C EXD1 Missense_Mutation p.R487G 0.04 tolerated_low_confidence(0.06) benign(0.007) TCGA-B6-A0WS-01 17 29220890 29220890 T C ATAD5 Silent p.G1673G 0.18 TCGA-B6-A0WS-01 17 61489359 61489359 G A TANC2 Missense_Mutation p.V1182I 0.24 deleterious(0.02) benign(0.379) TCGA-B6-A0WS-01 18 6995379 6995379 C G LAMA1 Missense_Mutation p.E1625Q 0.04 tolerated(0.51) benign(0.006) TCGA-B6-A0WS-01 19 4428843 4428843 C T CHAF1A Silent p.S520S 0.35 TCGA-B6-A0WS-01 1 206648210 206648210 C T IKBKE Silent p.G77G 0.22 TCGA-B6-A0WS-01 3 44970893 44970893 G T ZDHHC3 Missense_Mutation p.L244I 0.21 deleterious(0.01) probably_damaging(0.926) TCGA-B6-A0WS-01 3 46399915 46399915 C T CCR2 Silent p.C299C 0.27 TCGA-B6-A0WS-01 4 162577518 162577518 T C FSTL5 Missense_Mutation p.N286D 0.21 tolerated(0.05) benign(0.055) TCGA-B6-A0WS-01 5 14716838 14716838 A T ANKH Missense_Mutation p.I373N 0.15 deleterious(0) possibly_damaging(0.691) TCGA-B6-A0WS-01 6 44150736 44150736 G T CAPN11 Missense_Mutation p.R666L 0.16 deleterious(0) probably_damaging(0.916) TCGA-B6-A0WS-01 6 45515121 45515121 A G RUNX2 3'UTR 0.46 TCGA-B6-A0WS-01 8 124796718 124796718 C T FAM91A1 Missense_Mutation p.L238F 0.35 deleterious(0) probably_damaging(1) TCGA-B6-A0WS-01 8 48882407 48882407 G A MCM4 Silent p.V408V 0.15 TCGA-B6-A0WS-01 9 127994885 127994885 A G RABEPK Silent p.K229K 0.31 TCGA-B6-A0WT-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-B6-A0WT-01 11 46916348 46916348 G A LRP4 Silent p.F444F 0.46 TCGA-B6-A0WT-01 11 55681318 55681318 C T OR5W2 Silent p.A247A 0.37 TCGA-B6-A0WT-01 12 34177061 34177061 T G ALG10 Nonsense_Mutation p.Y112* 0.29 TCGA-B6-A0WT-01 12 49459216 49459216 T C RHEBL1 Splice_Site p.X127_splice 0.45 TCGA-B6-A0WT-01 14 64694310 64694310 G C SYNE2 3'Flank 0.35 TCGA-B6-A0WT-01 14 74436746 74436746 A G ENTPD5 Silent p.D389D 0.33 TCGA-B6-A0WT-01 17 33884703 33884703 G A SLFN14 Missense_Mutation p.R127C 0.25 tolerated(0.16) benign(0.017) TCGA-B6-A0WT-01 17 74084953 74084953 G A EXOC7 Missense_Mutation p.R418W 0.24 deleterious(0) probably_damaging(0.978) TCGA-B6-A0WT-01 19 39949655 39949655 G A SUPT5H Missense_Mutation p.E134K 0.15 deleterious(0) probably_damaging(0.99) TCGA-B6-A0WT-01 1 207262894 207262894 G A C4BPB Silent p.A6A 0.23 TCGA-B6-A0WT-01 1 63955841 63955841 A T ITGB3BP Missense_Mutation p.S72T 0.30 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WT-01 20 62129169 62129169 G A EEF1A2 5'UTR 0.20 TCGA-B6-A0WT-01 2 109099566 109099566 C A GCC2 Missense_Mutation p.Q1132K 0.33 deleterious(0.04) benign(0.004) TCGA-B6-A0WT-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.33 deleterious(0) probably_damaging(0.96) TCGA-B6-A0WT-01 3 38061760 38061760 G A PLCD1 Missense_Mutation p.R61C 0.29 deleterious(0) probably_damaging(1) TCGA-B6-A0WT-01 5 112177345 112177345 A G APC Silent p.P2018P 0.39 TCGA-B6-A0WT-01 5 177548592 177548592 C T N4BP3 Missense_Mutation p.R409W 0.48 deleterious(0) possibly_damaging(0.896) TCGA-B6-A0WT-01 6 157454190 157454190 T - ARID1B Frame_Shift_Del p.Q801Rfs*44 0.34 TCGA-B6-A0WT-01 6 36063825 36063825 G T MAPK14 Intron 0.24 TCGA-B6-A0WT-01 7 112112289 112112289 A G IFRD1 Missense_Mutation p.T353A 0.37 tolerated(0.23) benign(0.009) TCGA-B6-A0WT-01 7 72718330 72718330 A G NSUN5 Silent p.S277S 0.21 TCGA-B6-A0WT-01 8 121282319 121282319 C T COL14A1 Missense_Mutation p.S1040F 0.31 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WV-01 10 115377302 115377302 C T NRAP Missense_Mutation p.R962H 0.57 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WV-01 10 8111512 8111513 - T GATA3 Frame_Shift_Ins p.G335Wfs*18 0.20 TCGA-B6-A0WV-01 10 91162529 91162529 A T IFIT1 Missense_Mutation p.K166M 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-B6-A0WV-01 11 55944758 55944758 C T OR5J2 Missense_Mutation p.A222V 0.41 tolerated(0.37) benign(0.002) TCGA-B6-A0WV-01 11 65621019 65621019 C A SNX32 3'UTR 0.27 TCGA-B6-A0WV-01 11 94308183 94308183 C G PIWIL4 Missense_Mutation p.S62C 0.22 deleterious(0) possibly_damaging(0.474) TCGA-B6-A0WV-01 12 10600155 10600155 A G KLRC1 Missense_Mutation p.M189T 0.39 tolerated(0.4) benign(0.001) TCGA-B6-A0WV-01 12 113728784 113728784 A T TPCN1 Missense_Mutation p.N719I 0.40 deleterious(0) probably_damaging(0.997) TCGA-B6-A0WV-01 12 27470270 27470270 C T STK38L Missense_Mutation p.A280V 0.43 deleterious(0.01) probably_damaging(1) TCGA-B6-A0WV-01 12 70925884 70925884 T C PTPRB Silent p.K2145K 0.35 TCGA-B6-A0WV-01 13 101759935 101759935 C G NALCN Missense_Mutation p.E828Q 0.68 deleterious(0) probably_damaging(0.998) TCGA-B6-A0WV-01 13 37453778 37453778 C T SMAD9 Missense_Mutation p.A17T 0.72 tolerated(0.19) benign(0.271) TCGA-B6-A0WV-01 14 53145184 53145184 C T ERO1L Missense_Mutation p.V109I 0.39 tolerated(0.81) benign(0.04) TCGA-B6-A0WV-01 16 11988808 11988809 - A GSPT1 Intron 0.20 TCGA-B6-A0WV-01 16 18863401 18863401 C T SMG1 Silent p.P1680P 0.05 TCGA-B6-A0WV-01 16 29874007 29874007 G A CDIPT Silent p.F26F 0.07 TCGA-B6-A0WV-01 16 3336285 3336285 C T ZNF263 Intron 0.09 TCGA-B6-A0WV-01 17 65145995 65145995 A C HELZ Silent p.G821G 0.41 TCGA-B6-A0WV-01 17 68128759 68128759 G A KCNJ16 Silent p.K177K 0.28 TCGA-B6-A0WV-01 19 11462767 11462768 - A CCDC159 Frame_Shift_Ins p.N176Kfs*25 0.32 TCGA-B6-A0WV-01 19 6836477 6836477 C T VAV1 Silent p.Y604Y 0.04 TCGA-B6-A0WV-01 1 12331106 12331106 A G VPS13D Silent p.Q676Q 0.43 TCGA-B6-A0WV-01 1 159827578 159827580 TGA - VSIG8 In_Frame_Del p.S203del 0.30 TCGA-B6-A0WV-01 1 159913386 159913386 C T IGSF9 5'UTR 0.16 TCGA-B6-A0WV-01 1 32712864 32712864 C T FAM167B 5'UTR 0.37 TCGA-B6-A0WV-01 20 48124396 48124396 G A PTGIS 3'UTR 0.50 TCGA-B6-A0WV-01 21 39671581 39671581 G A KCNJ15 Missense_Mutation p.R133H 0.21 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WV-01 22 21138494 21138494 C G SERPIND1 Missense_Mutation p.P375R 0.42 tolerated(0.08) probably_damaging(0.998) TCGA-B6-A0WV-01 2 26432729 26432729 T C HADHA Silent p.E335E 0.29 TCGA-B6-A0WV-01 2 64148420 64148420 T C VPS54 Missense_Mutation p.N597D 0.33 tolerated(0.23) benign(0.013) TCGA-B6-A0WV-01 2 71654474 71654474 C T ZNF638 Silent p.S1825S 0.46 TCGA-B6-A0WV-01 3 111632538 111632538 A G PHLDB2 Missense_Mutation p.I570V 0.40 tolerated(0.1) benign(0.01) TCGA-B6-A0WV-01 3 123667564 123667564 G A CCDC14 Missense_Mutation p.P227S 0.33 tolerated(0.81) benign(0.032) TCGA-B6-A0WV-01 4 144390528 144390528 A G GAB1 3'UTR 0.35 TCGA-B6-A0WV-01 4 190876224 190876224 T G FRG1 Missense_Mutation p.L117R 0.16 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WV-01 4 89304502 89304502 G A HERC6 Missense_Mutation p.G110E 0.43 tolerated(0.07) benign(0.186) TCGA-B6-A0WV-01 6 13206102 13206102 A T PHACTR1 Silent p.L240L 0.65 TCGA-B6-A0WV-01 6 43593250 43593250 C G GTPBP2 Missense_Mutation p.K185N 0.68 deleterious(0) probably_damaging(1) TCGA-B6-A0WV-01 6 87964453 87964456 TATC - ZNF292 Frame_Shift_Del p.S370Ffs*21 0.66 TCGA-B6-A0WV-01 7 151882645 151882646 - A KMT2C Frame_Shift_Ins p.V1694Cfs*7 0.21 TCGA-B6-A0WV-01 7 75044928 75044928 G T POM121C 3'Flank 0.45 TCGA-B6-A0WV-01 9 134136463 134136463 T G FAM78A Missense_Mutation p.T200P 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-B6-A0WV-01 9 140139614 140139618 CGTCT - FAM166A Frame_Shift_Del p.E192Afs*16 0.43 TCGA-B6-A0WV-01 X 118715485 118715485 C - UBE2A Frame_Shift_Del p.T56Kfs*2 0.30 TCGA-B6-A0WV-01 X 13337990 13337990 G C ATXN3L Missense_Mutation p.L22V 0.06 deleterious(0) benign(0.421) TCGA-B6-A0WV-01 X 48826456 48826458 AGA - KCND1 In_Frame_Del p.F74del 0.37 TCGA-B6-A0WW-01 10 89653844 89653844 A - PTEN Frame_Shift_Del p.N48Tfs*6 0.27 TCGA-B6-A0WW-01 10 89717771 89717771 A T PTEN Nonsense_Mutation p.K266* 0.26 TCGA-B6-A0WW-01 11 1266823 1266823 G A MUC5B Missense_Mutation p.G2905R 0.46 unknown(0) TCGA-B6-A0WW-01 11 1471018 1471018 C T BRSK2 Silent p.I459I 0.65 TCGA-B6-A0WW-01 11 55595297 55595297 G T OR5L2 Silent p.L201L 0.36 TCGA-B6-A0WW-01 12 113905144 113905144 C T LHX5 Missense_Mutation p.R253Q 0.12 tolerated(0.07) possibly_damaging(0.797) TCGA-B6-A0WW-01 12 123187710 123187710 C G HCAR2 Missense_Mutation p.G41R 0.38 deleterious(0) probably_damaging(1) TCGA-B6-A0WW-01 12 21028168 21028168 G A SLCO1B3 Splice_Site p.X243_splice 0.33 TCGA-B6-A0WW-01 12 25102058 25102058 G C RP11-662I13.2 5'Flank 0.31 TCGA-B6-A0WW-01 12 45833793 45833793 G A RP11-438E8.2 5'Flank 0.35 TCGA-B6-A0WW-01 12 6976710 6976710 C T TPI1 Nonsense_Mutation p.Q31* 0.31 TCGA-B6-A0WW-01 14 50862547 50862547 A T CDKL1 Missense_Mutation p.S15T 0.40 tolerated(0.12) benign(0.261) TCGA-B6-A0WW-01 15 72456002 72456002 C T GRAMD2 Missense_Mutation p.V233M 0.42 tolerated(0.71) benign(0.003) TCGA-B6-A0WW-01 15 77759649 77759649 G A HMG20A Silent p.Q150Q 0.35 TCGA-B6-A0WW-01 16 105793 105793 G A SNRNP25 Silent p.Q59Q 0.36 TCGA-B6-A0WW-01 16 22926628 22926628 C T HS3ST2 Silent p.G283G 0.31 TCGA-B6-A0WW-01 16 89383351 89383361 GTCTGCTTCTC - ANKRD11 Frame_Shift_Del p.E23Wfs*5 0.09 TCGA-B6-A0WW-01 17 60767630 60767630 C T MRC2 Silent p.L1286L 0.28 TCGA-B6-A0WW-01 19 11708390 11708401 GTACAGGTCGCG - ZNF627 5'UTR 0.38 TCGA-B6-A0WW-01 19 31767370 31767370 A G TSHZ3 3'UTR 0.37 TCGA-B6-A0WW-01 19 4037695 4037695 C T PIAS4 Missense_Mutation p.P452L 0.41 tolerated(0.26) benign(0) TCGA-B6-A0WW-01 19 52023246 52023246 T G SIGLEC6 3'UTR 0.31 TCGA-B6-A0WW-01 1 196887467 196887467 G A CFHR4 Silent p.A555A 0.17 TCGA-B6-A0WW-01 1 225600340 225600340 A G LBR Silent p.Y300Y 0.27 TCGA-B6-A0WW-01 1 70820571 70820571 C G HHLA3 5'UTR 0.70 TCGA-B6-A0WW-01 20 2451335 2451336 - TG SNRPB Frame_Shift_Ins p.M1? 0.43 TCGA-B6-A0WW-01 20 48466163 48466163 T G SLC9A8 Missense_Mutation p.F160L 0.38 tolerated(0.45) benign(0.002) TCGA-B6-A0WW-01 20 62322279 62322279 G C RTEL1 Silent p.A869A 0.35 TCGA-B6-A0WW-01 21 45656914 45656914 C T ICOSLG Missense_Mutation p.R81Q 0.42 tolerated(0.42) benign(0.121) TCGA-B6-A0WW-01 22 31532969 31532969 A G PLA2G3 Missense_Mutation p.I375T 0.49 deleterious(0) probably_damaging(1) TCGA-B6-A0WW-01 2 220396583 220396583 A G ASIC4 Missense_Mutation p.D356G 0.32 deleterious(0) probably_damaging(0.914) TCGA-B6-A0WW-01 3 105377732 105377732 G T CBLB 3'UTR 0.40 TCGA-B6-A0WW-01 3 108276094 108276094 C T KIAA1524 Silent p.L727L 0.35 TCGA-B6-A0WW-01 3 113377798 113377798 C A KIAA2018 Missense_Mutation p.D911Y 0.36 possibly_damaging(0.798) TCGA-B6-A0WW-01 3 124017740 124017740 C A KALRN Missense_Mutation p.H356N 0.36 tolerated(0.08) benign(0.099) TCGA-B6-A0WW-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.33 tolerated(0.11) possibly_damaging(0.529) TCGA-B6-A0WW-01 3 47719705 47719705 A G SMARCC1 Silent p.D518D 0.58 TCGA-B6-A0WW-01 4 110610590 110610590 G A CASP6 Nonsense_Mutation p.R260* 0.37 TCGA-B6-A0WW-01 5 113698868 113698868 G C KCNN2 Missense_Mutation p.K132N 0.56 deleterious(0) probably_damaging(0.932) TCGA-B6-A0WW-01 5 137892185 137892185 G C HSPA9 Missense_Mutation p.L640V 0.34 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-B6-A0WW-01 5 878503 878503 T C BRD9 Missense_Mutation p.Y413C 0.20 deleterious(0) probably_damaging(1) TCGA-B6-A0WW-01 6 137147540 137147540 C G PEX7 Missense_Mutation p.S91W 0.37 deleterious(0) probably_damaging(1) TCGA-B6-A0WW-01 6 165706931 165706931 G T C6orf118 Missense_Mutation p.A364E 0.36 tolerated(0.67) benign(0.016) TCGA-B6-A0WW-01 7 1273287 1273287 G A UNCX Missense_Mutation p.E136K 0.39 deleterious(0) probably_damaging(0.998) TCGA-B6-A0WW-01 7 1273288 1273288 A C UNCX Missense_Mutation p.E136A 0.39 deleterious(0) probably_damaging(0.998) TCGA-B6-A0WW-01 8 113237127 113237127 G A CSMD3 Missense_Mutation p.S3666L 0.15 deleterious(0) possibly_damaging(0.496) TCGA-B6-A0WW-01 9 117071542 117071542 C T COL27A1 Silent p.V1740V 0.10 TCGA-B6-A0WW-01 X 142795241 142795241 C A SPANXN2 Missense_Mutation p.G146V 0.03 tolerated(0.98) unknown(0) TCGA-B6-A0WW-01 X 151908833 151908833 G C CSAG1 Missense_Mutation p.W24C 0.39 tolerated_low_confidence(0.2) probably_damaging(0.99) TCGA-B6-A0WW-01 X 152771478 152771478 G A BGN Missense_Mutation p.R170H 0.37 tolerated(0.08) benign(0.003) TCGA-B6-A0WW-01 X 47835412 47835412 C T ZNF182 3'UTR 0.41 TCGA-B6-A0WX-01 10 43292558 43292558 A G BMS1 Silent p.Q622Q 0.26 TCGA-B6-A0WX-01 10 68686294 68686295 - TAAGCCAAAGCA LRRTM3 5'UTR 0.16 TCGA-B6-A0WX-01 11 118498282 118498282 A G PHLDB1 Missense_Mutation p.Y248C 0.19 deleterious(0) probably_damaging(0.95) TCGA-B6-A0WX-01 11 64427860 64427860 G A NRXN2 Missense_Mutation p.A778V 0.28 deleterious(0.03) benign(0.04) TCGA-B6-A0WX-01 12 64536255 64536255 G C SRGAP1 Missense_Mutation p.E1021Q 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.778) TCGA-B6-A0WX-01 16 1251909 1251909 C T CACNA1H Missense_Mutation p.R487C 0.33 tolerated(0.08) benign(0.005) TCGA-B6-A0WX-01 16 3740856 3740856 C T TRAP1 Silent p.S73S 0.04 TCGA-B6-A0WX-01 16 70595640 70595640 G T SF3B3 Silent p.S747S 0.23 TCGA-B6-A0WX-01 17 42155728 42155728 G C HDAC5 3'UTR 0.41 TCGA-B6-A0WX-01 17 46199646 46199646 C A SNX11 3'UTR 0.43 TCGA-B6-A0WX-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.40 deleterious(0) probably_damaging(1) TCGA-B6-A0WX-01 17 7579346 7579346 A T TP53 Nonsense_Mutation p.L114* 0.15 TCGA-B6-A0WX-01 18 13682059 13682059 T C FAM210A Silent p.P6P 0.30 TCGA-B6-A0WX-01 18 23847534 23847534 G T TAF4B Missense_Mutation p.A182S 0.15 tolerated(0.41) benign(0.015) TCGA-B6-A0WX-01 18 29210933 29210933 T G B4GALT6 Missense_Mutation p.K255N 0.23 deleterious(0) possibly_damaging(0.616) TCGA-B6-A0WX-01 19 21991152 21991152 C G ZNF43 Missense_Mutation p.E563Q 0.25 deleterious(0.01) possibly_damaging(0.584) TCGA-B6-A0WX-01 1 119964843 119964843 G A HSD3B2 Missense_Mutation p.R240Q 0.40 tolerated(0.24) benign(0.012) TCGA-B6-A0WX-01 1 160389364 160389364 C T VANGL2 Silent p.D255D 0.19 TCGA-B6-A0WX-01 1 236988672 236988672 G A MTR Silent p.T300T 0.08 TCGA-B6-A0WX-01 1 24201293 24201293 G A CNR2 Missense_Mutation p.T272M 0.40 tolerated(0.05) possibly_damaging(0.873) TCGA-B6-A0WX-01 1 28920328 28920328 C A RAB42 Missense_Mutation p.P6Q 0.33 deleterious(0.01) possibly_damaging(0.9) TCGA-B6-A0WX-01 20 42169425 42169425 T C L3MBTL1 Silent p.C766C 0.21 TCGA-B6-A0WX-01 22 29445235 29445235 C T ZNRF3 Missense_Mutation p.R356C 0.38 deleterious(0.01) possibly_damaging(0.886) TCGA-B6-A0WX-01 2 177195335 177195335 C G MTX2 Missense_Mutation p.C189W 0.13 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WX-01 2 27825429 27825429 G T ZNF512 Splice_Site p.X256_splice 0.17 TCGA-B6-A0WX-01 2 46605867 46605867 C T EPAS1 Silent p.F505F 0.23 TCGA-B6-A0WX-01 2 46608750 46608750 T G EPAS1 Missense_Mutation p.F687L 0.14 tolerated(0.16) benign(0.005) TCGA-B6-A0WX-01 2 46985893 46985893 C A SOCS5 Missense_Mutation p.S75Y 0.31 tolerated_low_confidence(0.1) benign(0.034) TCGA-B6-A0WX-01 2 60688385 60688385 G T BCL11A Silent p.S554S 0.33 TCGA-B6-A0WX-01 3 10157440 10157440 C T BRK1 Missense_Mutation p.R19W 0.21 deleterious(0.04) probably_damaging(0.974) TCGA-B6-A0WX-01 3 127292508 127292508 A C TPRA1 Silent p.A326A 0.10 TCGA-B6-A0WX-01 3 9948409 9948409 G C IL17RE Missense_Mutation p.R129P 0.28 tolerated(0.28) benign(0.003) TCGA-B6-A0WX-01 4 25664417 25664417 A G SLC34A2 Missense_Mutation p.D68G 0.28 deleterious(0) probably_damaging(0.984) TCGA-B6-A0WX-01 6 112382347 112382347 G A WISP3 Missense_Mutation p.V86M 0.19 deleterious(0.02) possibly_damaging(0.807) TCGA-B6-A0WX-01 6 16327108 16327108 C T ATXN1 Silent p.L478L 0.36 TCGA-B6-A0WX-01 6 168376753 168376753 G A RP3-470B24.5 RNA 0.31 TCGA-B6-A0WX-01 6 30918798 30918798 A G DPCR1 Missense_Mutation p.T853A 0.22 deleterious(0.04) benign(0.041) TCGA-B6-A0WX-01 7 11582644 11582644 C G THSD7A Missense_Mutation p.W518C 0.20 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WX-01 7 129350354 129350354 A G NRF1 Silent p.P302P 0.27 TCGA-B6-A0WX-01 7 81381354 81381354 G A HGF Intron 0.26 TCGA-B6-A0WX-01 8 142446806 142446806 T A CTD-3064M3.7 RNA 0.19 TCGA-B6-A0WX-01 8 72965063 72965063 C T RP11-383H13.1 3'UTR 0.17 TCGA-B6-A0WX-01 X 44101421 44101421 T G EFHC2 Missense_Mutation p.D409A 0.22 tolerated(0.07) benign(0.001) TCGA-B6-A0WX-01 X 64722506 64722506 G T ZC3H12B Missense_Mutation p.G643V 0.29 deleterious(0) possibly_damaging(0.796) TCGA-B6-A0WX-01 X 69890251 69890251 G A TEX11 Silent p.Y467Y 0.20 TCGA-B6-A0WX-01 X 83319214 83319214 G T RPS6KA6 3'UTR 0.25 TCGA-B6-A0WY-01 10 115370292 115370292 G A NRAP Nonsense_Mutation p.R1177* 0.11 TCGA-B6-A0WY-01 10 76781825 76781827 GAA - KAT6B In_Frame_Del p.E1076del 0.16 TCGA-B6-A0WY-01 11 63680151 63680151 G A RCOR2 Nonsense_Mutation p.Q342* 0.08 TCGA-B6-A0WY-01 11 70544853 70544853 C T SHANK2 Missense_Mutation p.R599H 0.11 deleterious(0) probably_damaging(0.948) TCGA-B6-A0WY-01 12 15068440 15068440 G A ERP27 Silent p.L253L 0.16 TCGA-B6-A0WY-01 12 48741103 48741103 C G ZNF641 Missense_Mutation p.A84P 0.16 tolerated(0.17) possibly_damaging(0.601) TCGA-B6-A0WY-01 12 6778202 6778202 T C ZNF384 Missense_Mutation p.T443A 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-B6-A0WY-01 13 96555290 96555290 C A UGGT2 Missense_Mutation p.G774W 0.28 deleterious(0) probably_damaging(1) TCGA-B6-A0WY-01 15 28389261 28389261 G A HERC2 Missense_Mutation p.A3754V 0.20 benign(0.367) TCGA-B6-A0WY-01 15 38229062 38229062 T A TMCO5A Missense_Mutation p.I52N 0.08 deleterious(0) benign(0.033) TCGA-B6-A0WY-01 15 41509295 41509295 C A EXD1 Missense_Mutation p.S29I 0.15 deleterious(0) possibly_damaging(0.777) TCGA-B6-A0WY-01 15 48766481 48766481 C A FBN1 Missense_Mutation p.G1394V 0.15 probably_damaging(0.958) TCGA-B6-A0WY-01 15 67482966 67482966 C G SMAD3 3'UTR 0.12 TCGA-B6-A0WY-01 16 75690148 75690148 G A TERF2IP Missense_Mutation p.C280Y 0.21 tolerated(0.14) possibly_damaging(0.836) TCGA-B6-A0WY-01 17 16049835 16049835 G A NCOR1 Nonsense_Mutation p.Q313* 0.28 TCGA-B6-A0WY-01 17 73520517 73520517 A C TSEN54 3'UTR 0.09 TCGA-B6-A0WY-01 17 8647932 8647932 G A CCDC42 5'UTR 0.32 TCGA-B6-A0WY-01 19 17394236 17394236 C T ANKLE1 Silent p.F221F 0.09 TCGA-B6-A0WY-01 19 36220093 36220093 G T KMT2B Nonsense_Mutation p.E1605* 0.22 TCGA-B6-A0WY-01 19 41255423 41255423 C T C19orf54 Missense_Mutation p.E96K 0.07 deleterious(0.01) possibly_damaging(0.544) TCGA-B6-A0WY-01 1 146747774 146747775 - A CHD1L Frame_Shift_Ins p.V466Sfs*16 0.13 TCGA-B6-A0WY-01 1 153747851 153747851 A C SLC27A3 Missense_Mutation p.T7P 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-B6-A0WY-01 1 156669745 156669745 C T CRABP2 3'UTR 0.21 TCGA-B6-A0WY-01 1 222833553 222833553 C G MIA3 Silent p.S1670S 0.08 TCGA-B6-A0WY-01 1 248436504 248436504 G C OR2T33 Missense_Mutation p.L205V 0.12 deleterious(0.01) possibly_damaging(0.901) TCGA-B6-A0WY-01 1 26314809 26314809 C T PAFAH2 Missense_Mutation p.R85H 0.07 tolerated(0.12) benign(0.059) TCGA-B6-A0WY-01 21 31023492 31023492 C G GRIK1 Missense_Mutation p.E300D 0.07 tolerated(0.07) benign(0.223) TCGA-B6-A0WY-01 2 220354594 220354594 C T SPEG Missense_Mutation p.P2952S 0.16 benign(0.044) TCGA-B6-A0WY-01 2 233322998 233322998 G A ALPI Missense_Mutation p.D355N 0.16 tolerated(0.37) benign(0.01) TCGA-B6-A0WY-01 2 56145372 56145372 C A EFEMP1 Missense_Mutation p.V38L 0.10 tolerated(0.36) benign(0.004) TCGA-B6-A0WY-01 3 178916940 178916948 AGAAAAGAT - PIK3CA In_Frame_Del p.E109_I112delinsD 0.41 TCGA-B6-A0WY-01 3 99568842 99568842 C T FILIP1L Missense_Mutation p.V560I 0.07 tolerated(0.21) benign(0.007) TCGA-B6-A0WY-01 4 83411379 83411379 C T TMEM150C Missense_Mutation p.E126K 0.10 tolerated(0.33) possibly_damaging(0.584) TCGA-B6-A0WY-01 5 1466902 1466902 C T LPCAT1 Missense_Mutation p.R461Q 0.05 tolerated(0.52) benign(0.023) TCGA-B6-A0WY-01 5 67591118 67591126 ATCCAGCTG - PIK3R1 In_Frame_Del p.I571_L573del 0.20 TCGA-B6-A0WY-01 7 72281250 72281250 A G TYW1B Missense_Mutation p.V80A 0.15 tolerated(0.43) benign(0.012) TCGA-B6-A0WY-01 8 113326663 113326663 T C CSMD3 Missense_Mutation p.Y2515C 0.04 deleterious(0.01) possibly_damaging(0.755) TCGA-B6-A0WY-01 8 8643521 8643521 A C MFHAS1 3'UTR 0.14 TCGA-B6-A0WY-01 9 5922013 5922013 G A KIAA2026 Missense_Mutation p.T1328I 0.25 deleterious(0.01) benign(0.305) TCGA-B6-A0WZ-01 10 104156483 104156483 G A NFKB2 Missense_Mutation p.R49K 0.11 deleterious(0.01) possibly_damaging(0.763) TCGA-B6-A0WZ-01 10 115457259 115457259 G A CASP7 Missense_Mutation p.D36N 0.04 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-B6-A0WZ-01 10 45799764 45799764 G A OR13A1 Missense_Mutation p.S36L 0.08 deleterious(0.03) benign(0.177) TCGA-B6-A0WZ-01 10 79773458 79773458 G A POLR3A Missense_Mutation p.H508Y 0.10 deleterious(0) probably_damaging(0.989) TCGA-B6-A0WZ-01 10 85904729 85904729 G A GHITM Missense_Mutation p.R147K 0.08 deleterious(0.04) possibly_damaging(0.838) TCGA-B6-A0WZ-01 10 95660752 95660752 G A SLC35G1 Silent p.V201V 0.27 TCGA-B6-A0WZ-01 11 4843407 4843407 C G OR51F2 Missense_Mutation p.I264M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-B6-A0WZ-01 12 104056685 104056685 G A STAB2 Missense_Mutation p.R644Q 0.36 tolerated(0.16) probably_damaging(0.931) TCGA-B6-A0WZ-01 12 125397950 125397950 C G UBC Missense_Mutation p.G123A 0.11 deleterious(0) possibly_damaging(0.611) TCGA-B6-A0WZ-01 12 20787975 20787975 G A PDE3A Silent p.E662E 0.11 TCGA-B6-A0WZ-01 12 9020914 9020914 C T A2ML1 Missense_Mutation p.P1341L 0.33 tolerated(0.56) benign(0) TCGA-B6-A0WZ-01 12 98925559 98925559 G C TMPO Missense_Mutation p.E170Q 0.10 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-B6-A0WZ-01 13 35770282 35770282 C G NBEA Missense_Mutation p.Q1737E 0.07 tolerated_low_confidence(1) benign(0.248) TCGA-B6-A0WZ-01 13 45010226 45010226 G A TSC22D1 Missense_Mutation p.S973F 0.07 deleterious(0) possibly_damaging(0.713) TCGA-B6-A0WZ-01 13 45148990 45148990 G A TSC22D1 Silent p.F407F 0.14 TCGA-B6-A0WZ-01 13 45149901 45149901 G C TSC22D1 Missense_Mutation p.Q104E 0.16 deleterious(0) probably_damaging(0.966) TCGA-B6-A0WZ-01 13 67799842 67799842 C G PCDH9 Missense_Mutation p.E911Q 0.14 deleterious(0.04) probably_damaging(0.969) TCGA-B6-A0WZ-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.59 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WZ-01 14 53194278 53194278 C T PSMC6 Silent p.V385V 0.10 TCGA-B6-A0WZ-01 14 69521394 69521394 G A DCAF5 Missense_Mutation p.S670F 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-B6-A0WZ-01 14 76249634 76249634 C T TTLL5 Missense_Mutation p.S916F 0.17 deleterious(0.02) benign(0.372) TCGA-B6-A0WZ-01 14 93276650 93276650 G A GOLGA5 Silent p.Q348Q 0.05 TCGA-B6-A0WZ-01 14 93693375 93693375 C T UBR7 Silent p.C424C 0.06 TCGA-B6-A0WZ-01 15 44856881 44856881 C T SPG11 Missense_Mutation p.E2339K 0.09 deleterious(0) possibly_damaging(0.801) TCGA-B6-A0WZ-01 15 79296367 79296367 G A RASGRF1 Silent p.S758S 0.33 TCGA-B6-A0WZ-01 16 22268588 22268588 C T EEF2K Silent p.F261F 0.06 TCGA-B6-A0WZ-01 16 67070634 67070634 C A CBFB Silent p.V86V 0.42 TCGA-B6-A0WZ-01 16 67655464 67655464 G C CTCF Missense_Mutation p.D443H 0.17 tolerated(0.13) probably_damaging(0.984) TCGA-B6-A0WZ-01 17 12011144 12011144 C T MAP2K4 Missense_Mutation p.S184L 0.43 deleterious(0) probably_damaging(1) TCGA-B6-A0WZ-01 17 18565439 18565439 A C ZNF286B Missense_Mutation p.I460M 0.09 deleterious(0) probably_damaging(0.982) TCGA-B6-A0WZ-01 17 61950968 61950968 C G CSH2 Missense_Mutation p.A3P 0.35 tolerated(0.3) benign(0.015) TCGA-B6-A0WZ-01 19 12429183 12429183 G A ZNF563 3'UTR 0.12 TCGA-B6-A0WZ-01 19 21301520 21301520 C T ZNF714 3'UTR 0.16 TCGA-B6-A0WZ-01 19 40407987 40407987 G A FCGBP Silent p.A1578A 0.32 TCGA-B6-A0WZ-01 19 45912775 45912775 C G ERCC1 3'Flank 0.23 TCGA-B6-A0WZ-01 19 45916975 45916975 C A ERCC1 Missense_Mutation p.R268I 0.09 tolerated(0.06) benign(0.374) TCGA-B6-A0WZ-01 19 55708037 55708037 G A PTPRH Missense_Mutation p.R704W 0.46 benign(0.063) TCGA-B6-A0WZ-01 19 8564533 8564533 G A PRAM1 Silent p.S53S 0.31 TCGA-B6-A0WZ-01 19 9062012 9062012 G A MUC16 Silent p.I8478I 0.12 TCGA-B6-A0WZ-01 19 9801702 9801702 G C ZNF812 Silent p.L159L 0.06 TCGA-B6-A0WZ-01 1 116233968 116233968 G T VANGL1 Missense_Mutation p.V515F 0.38 deleterious(0.03) possibly_damaging(0.845) TCGA-B6-A0WZ-01 1 152857160 152857160 G A SMCP Missense_Mutation p.E88K 0.16 deleterious(0.03) possibly_damaging(0.486) TCGA-B6-A0WZ-01 1 161496275 161496275 C T HSPA6 Silent p.F609F 0.16 TCGA-B6-A0WZ-01 1 161601100 161601100 G C FCGR3B 5'Flank 0.56 TCGA-B6-A0WZ-01 1 180147983 180147983 G A QSOX1 Silent p.L190L 0.13 TCGA-B6-A0WZ-01 1 214557335 214557335 G A PTPN14 Silent p.L621L 0.50 TCGA-B6-A0WZ-01 1 3313062 3313062 A G PRDM16 Missense_Mutation p.Y194C 0.16 deleterious(0) probably_damaging(0.999) TCGA-B6-A0WZ-01 1 3697831 3697831 C T LRRC47 Missense_Mutation p.D525N 0.09 tolerated(0.1) benign(0.008) TCGA-B6-A0WZ-01 20 43585106 43585106 C T TOMM34 Missense_Mutation p.E50K 0.13 deleterious(0.03) benign(0.034) TCGA-B6-A0WZ-01 20 4713429 4713429 C T PRNT 5'UTR 0.19 TCGA-B6-A0WZ-01 2 109383395 109383395 G C RANBP2 Missense_Mutation p.E2134Q 0.07 tolerated(0.11) probably_damaging(0.999) TCGA-B6-A0WZ-01 2 152466574 152466574 C A NEB Nonsense_Mutation p.E4027* 0.13 TCGA-B6-A0WZ-01 2 179450019 179450019 G C TTN Silent p.L21484L 0.07 TCGA-B6-A0WZ-01 2 95601068 95601068 G A AC097374.2 RNA 0.26 TCGA-B6-A0WZ-01 3 121526220 121526220 C A IQCB1 Missense_Mutation p.M186I 0.12 deleterious(0) benign(0.009) TCGA-B6-A0WZ-01 3 136141850 136141850 C T STAG1 Missense_Mutation p.D563N 0.07 deleterious(0) probably_damaging(0.927) TCGA-B6-A0WZ-01 3 184100846 184100846 G A CHRD Missense_Mutation p.E370K 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-B6-A0WZ-01 3 44285859 44285859 G A TOPAZ1 Missense_Mutation p.E621K 0.07 tolerated(0.1) benign(0.089) TCGA-B6-A0WZ-01 3 44683715 44683715 G A ZNF197 Missense_Mutation p.E365K 0.09 tolerated(0.71) benign(0.073) TCGA-B6-A0WZ-01 3 98188682 98188682 G A OR5K1 Missense_Mutation p.E88K 0.10 tolerated(1) benign(0.004) TCGA-B6-A0WZ-01 3 9845592 9845592 G A ARPC4 Silent p.V151V 0.12 TCGA-B6-A0WZ-01 4 100543919 100543919 G A MTTP Missense_Mutation p.E867K 0.11 deleterious(0) possibly_damaging(0.771) TCGA-B6-A0WZ-01 4 22415369 22415369 G C GPR125 Silent p.L626L 0.11 TCGA-B6-A0WZ-01 4 46043041 46043041 G A GABRG1 Silent p.F454F 0.09 TCGA-B6-A0WZ-01 4 79792100 79792100 G A BMP2K Silent p.Q465Q 0.29 TCGA-B6-A0WZ-01 5 10403546 10403546 C T MARCH6 Nonsense_Mutation p.R409* 0.07 TCGA-B6-A0WZ-01 5 124080692 124080692 G C ZNF608 5'UTR 0.08 TCGA-B6-A0WZ-01 5 125939631 125939631 C T PHAX Missense_Mutation p.L156F 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-B6-A0WZ-01 5 167517656 167517656 G C TENM2 Missense_Mutation p.Q531H 0.13 tolerated(0.14) benign(0.005) TCGA-B6-A0WZ-01 5 40775040 40775040 G C PRKAA1 Missense_Mutation p.S133C 0.10 deleterious_low_confidence(0.05) benign(0.064) TCGA-B6-A0WZ-01 5 52193332 52193332 G A ITGA1 Silent p.Q379Q 0.12 TCGA-B6-A0WZ-01 5 75906961 75906961 C G IQGAP2 Missense_Mutation p.Q492E 0.10 tolerated(0.68) benign(0.028) TCGA-B6-A0WZ-01 5 79733498 79733498 C T ZFYVE16 Nonsense_Mutation p.Q332* 0.12 TCGA-B6-A0WZ-01 5 90001311 90001311 T A GPR98 Missense_Mutation p.N2827K 0.25 probably_damaging(0.982) TCGA-B6-A0WZ-01 6 119522507 119522507 C T MAN1A1 Missense_Mutation p.M374I 0.08 tolerated(0.2) benign(0.193) TCGA-B6-A0WZ-01 6 146242419 146242419 C G SHPRH Missense_Mutation p.E1298Q 0.11 deleterious(0) probably_damaging(1) TCGA-B6-A0WZ-01 6 151055150 151055150 C G PLEKHG1 Silent p.L111L 0.12 TCGA-B6-A0WZ-01 6 57055252 57055252 A T RAB23 3'UTR 0.15 TCGA-B6-A0WZ-01 7 130003343 130003343 T G CPA5 Silent p.G277G 0.24 TCGA-B6-A0WZ-01 7 142247587 142247587 G C TRBV7-3 5'UTR 0.12 TCGA-B6-A0WZ-01 7 17873801 17873801 C G SNX13 Missense_Mutation p.E491Q 0.12 tolerated(0.39) benign(0.038) TCGA-B6-A0WZ-01 7 31117691 31117691 C T ADCYAP1R1 Silent p.F81F 0.12 TCGA-B6-A0WZ-01 7 31117700 31117700 C T ADCYAP1R1 Silent p.F84F 0.13 TCGA-B6-A0WZ-01 7 47344561 47344561 C T TNS3 Silent p.G897G 0.20 TCGA-B6-A0WZ-01 8 110587797 110587797 C T SYBU Missense_Mutation p.E444K 0.09 tolerated(0.17) benign(0.149) TCGA-B6-A0WZ-01 8 35616880 35616880 G A UNC5D Missense_Mutation p.E736K 0.12 deleterious(0.01) possibly_damaging(0.619) TCGA-B6-A0WZ-01 8 74204479 74204479 G A RPL7 Silent p.I95I 0.16 TCGA-B6-A0WZ-01 9 21239566 21239566 C T IFNA14 Silent p.V123V 0.09 TCGA-B6-A0WZ-01 9 35710572 35710572 C T TLN1 Missense_Mutation p.E1438K 0.13 deleterious(0) probably_damaging(0.945) TCGA-B6-A0WZ-01 9 36108156 36108156 G C RECK Missense_Mutation p.R587T 0.05 deleterious(0.04) benign(0.444) TCGA-B6-A0WZ-01 9 5557679 5557679 C G PDCD1LG2 Missense_Mutation p.I231M 0.04 deleterious(0) possibly_damaging(0.713) TCGA-B6-A0WZ-01 9 86593158 86593158 C T HNRNPK Missense_Mutation p.E4K 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-B6-A0WZ-01 9 93629418 93629418 G T SYK Missense_Mutation p.W284C 0.25 tolerated(0.18) possibly_damaging(0.885) TCGA-B6-A0WZ-01 X 49459378 49459378 C T PAGE1 5'UTR 0.05 TCGA-B6-A0WZ-01 X 77264716 77264716 G A ATP7A Missense_Mutation p.D609N 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-B6-A0X0-01 10 69961611 69961611 G T MYPN Silent p.V1173V 0.36 TCGA-B6-A0X0-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.27 TCGA-B6-A0X0-01 11 55135398 55135398 C A OR4A15 Missense_Mutation p.D13E 0.45 benign(0) TCGA-B6-A0X0-01 11 55606584 55606584 G A OR5D16 Silent p.V119V 0.04 TCGA-B6-A0X0-01 13 46732779 46732779 T C LCP1 Missense_Mutation p.H79R 0.33 tolerated(0.5) benign(0.001) TCGA-B6-A0X0-01 17 27445423 27445423 T C MYO18A Missense_Mutation p.N622S 0.27 tolerated(0.46) benign(0.011) TCGA-B6-A0X0-01 17 45367609 45367609 A G ITGB3 Missense_Mutation p.N365S 0.36 deleterious(0.01) benign(0.192) TCGA-B6-A0X0-01 18 12971157 12971157 G A SEH1L Missense_Mutation p.R176H 0.37 deleterious(0) benign(0.441) TCGA-B6-A0X0-01 19 8191626 8191626 C T FBN3 Missense_Mutation p.R796Q 0.41 tolerated(0.27) benign(0.227) TCGA-B6-A0X0-01 1 120465265 120465265 C A NOTCH2 Missense_Mutation p.V1666F 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-B6-A0X0-01 20 34519315 34519315 A T PHF20 Missense_Mutation p.Q750L 0.28 tolerated(0.1) probably_damaging(0.954) TCGA-B6-A0X0-01 21 36252921 36252935 AGCATTTCTCAGCTC - RUNX1 In_Frame_Del p.E143_A147del 0.36 TCGA-B6-A0X0-01 2 170135997 170135997 C A LRP2 Missense_Mutation p.V484L 0.33 benign(0.107) TCGA-B6-A0X0-01 2 191922752 191922752 G A STAT4 Nonsense_Mutation p.R400* 0.27 TCGA-B6-A0X0-01 2 47403600 47403600 T A CALM2 5'UTR 0.38 TCGA-B6-A0X0-01 3 133674014 133674014 C T SLCO2A1 Missense_Mutation p.E141K 0.39 tolerated(0.08) benign(0.024) TCGA-B6-A0X0-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.28 deleterious(0.01) probably_damaging(1) TCGA-B6-A0X0-01 3 37035302 37035302 C T MLH1 Intron 0.35 TCGA-B6-A0X0-01 4 152096472 152096472 G T SH3D19 Missense_Mutation p.S15Y 0.34 deleterious(0) probably_damaging(0.968) TCGA-B6-A0X0-01 5 31294263 31294263 C T CDH6 Silent p.P141P 0.42 TCGA-B6-A0X0-01 6 143095952 143095952 C T HIVEP2 5'UTR 0.36 TCGA-B6-A0X0-01 7 88964843 88964843 T C ZNF804B Silent p.T849T 0.20 TCGA-B6-A0X0-01 8 140631311 140631311 C T KCNK9 Silent p.A105A 0.07 TCGA-B6-A0X0-01 X 12722503 12722503 C A FRMPD4 Missense_Mutation p.L366I 0.39 tolerated(0.14) probably_damaging(0.98) TCGA-B6-A0X0-01 X 1522276 1522276 C T ASMTL Silent p.E584E 0.36 TCGA-B6-A0X0-01 X 55042138 55042138 G T ALAS2 Silent p.S347S 0.30 TCGA-B6-A0X0-01 X 99663130 99663130 G C PCDH19 Missense_Mutation p.P156A 0.34 deleterious(0.02) probably_damaging(0.93) TCGA-B6-A0X1-01 10 123727171 123727171 G C NSMCE4A Missense_Mutation p.L218V 0.37 tolerated(0.16) probably_damaging(0.93) TCGA-B6-A0X1-01 10 127505059 127505059 G A UROS Missense_Mutation p.L4F 0.69 deleterious(0) probably_damaging(0.996) TCGA-B6-A0X1-01 10 76735479 76735479 T C KAT6B Missense_Mutation p.Y462H 0.05 possibly_damaging(0.899) TCGA-B6-A0X1-01 10 7769038 7769038 T G ITIH2 Silent p.V370V 0.25 TCGA-B6-A0X1-01 11 124252746 124252746 C G OR8B2 Missense_Mutation p.R165T 0.62 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-B6-A0X1-01 11 216640 216640 G A SIRT3 3'UTR 0.61 TCGA-B6-A0X1-01 11 32119986 32119986 T A RCN1 Missense_Mutation p.L180H 0.38 tolerated(0.14) possibly_damaging(0.806) TCGA-B6-A0X1-01 11 56756447 56756448 AG C OR5AK2 Frame_Shift_Del p.Q20Pfs*17 0.30 TCGA-B6-A0X1-01 11 62435228 62435228 G A METTL12 3'UTR 0.41 TCGA-B6-A0X1-01 11 74058348 74058348 G T PGM2L1 Missense_Mutation p.H262N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-B6-A0X1-01 12 106903411 106903411 C G POLR3B 3'UTR 0.34 TCGA-B6-A0X1-01 12 11461408 11461408 C G PRB4 Missense_Mutation p.G170A 0.05 deleterious_low_confidence(0) unknown(0) TCGA-B6-A0X1-01 12 1920931 1920931 G C CACNA2D4 Intron 0.17 TCGA-B6-A0X1-01 12 49312589 49312589 A G CCDC65 Missense_Mutation p.Q310R 0.06 tolerated(0.1) possibly_damaging(0.666) TCGA-B6-A0X1-01 13 114303807 114303807 A C ATP4B Missense_Mutation p.I253S 0.24 tolerated(0.2) benign(0.077) TCGA-B6-A0X1-01 13 25265155 25265155 C T ATP12A Missense_Mutation p.R285C 0.62 deleterious(0) possibly_damaging(0.808) TCGA-B6-A0X1-01 13 42876522 42876522 G A AKAP11 Missense_Mutation p.A1214T 0.31 deleterious(0.03) probably_damaging(1) TCGA-B6-A0X1-01 14 21500248 21500248 A G TPPP2 3'UTR 0.52 TCGA-B6-A0X1-01 15 81625444 81625444 C G TMC3 Silent p.S873S 0.33 TCGA-B6-A0X1-01 15 89731456 89731456 C T ABHD2 Missense_Mutation p.P283L 0.14 tolerated(0.28) benign(0.002) TCGA-B6-A0X1-01 15 90447196 90447196 G A C15orf38-AP3S2 Silent p.D107D 0.69 TCGA-B6-A0X1-01 16 28187312 28187312 G T XPO6 Nonsense_Mutation p.Y104* 0.44 TCGA-B6-A0X1-01 16 4408084 4408084 G A CORO7 Silent p.D826D 0.27 TCGA-B6-A0X1-01 16 46934670 46934670 G A GPT2 Missense_Mutation p.R137Q 0.32 tolerated(0.19) probably_damaging(0.921) TCGA-B6-A0X1-01 16 5038173 5038173 C T SEC14L5 Silent p.V79V 0.40 TCGA-B6-A0X1-01 16 57503883 57503883 C T POLR2C Silent p.I150I 0.55 TCGA-B6-A0X1-01 16 9934882 9934883 - A GRIN2A Frame_Shift_Ins p.T470Yfs*21 0.17 TCGA-B6-A0X1-01 17 41276047 41276047 C - BRCA1 Frame_Shift_Del p.E23Sfs*8 0.45 TCGA-B6-A0X1-01 17 42476445 42476445 G A GPATCH8 Silent p.S1000S 0.67 TCGA-B6-A0X1-01 17 43923189 43923189 T C SPPL2C Missense_Mutation p.L306P 0.12 tolerated(0.13) benign(0.056) TCGA-B6-A0X1-01 17 67031916 67031916 C T ABCA9 Missense_Mutation p.G276D 0.06 tolerated(0.05) possibly_damaging(0.836) TCGA-B6-A0X1-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.59 TCGA-B6-A0X1-01 17 9586235 9586236 CT - USP43 Frame_Shift_Del p.F402Lfs*2 0.46 TCGA-B6-A0X1-01 18 10761002 10761002 G A PIEZO2 Silent p.I1094I 0.51 TCGA-B6-A0X1-01 19 12256357 12256357 A G ZNF625 Missense_Mutation p.Y292H 0.08 tolerated(0.5) possibly_damaging(0.563) TCGA-B6-A0X1-01 19 19377377 19377377 C A TM6SF2 Silent p.L282L 0.55 TCGA-B6-A0X1-01 19 3028349 3028349 C T TLE2 Missense_Mutation p.E52K 0.44 deleterious(0.01) possibly_damaging(0.791) TCGA-B6-A0X1-01 19 37368936 37368936 G C ZNF345 Missense_Mutation p.E402Q 0.38 tolerated(0.23) benign(0.152) TCGA-B6-A0X1-01 1 109394956 109394956 C G AKNAD1 Missense_Mutation p.D111H 0.51 deleterious(0.03) benign(0.142) TCGA-B6-A0X1-01 1 110031008 110031008 A G ATXN7L2 Missense_Mutation p.K235R 0.53 tolerated(0.67) probably_damaging(0.946) TCGA-B6-A0X1-01 1 157516898 157516898 G A FCRL5 Missense_Mutation p.R48C 0.40 tolerated(0.06) possibly_damaging(0.773) TCGA-B6-A0X1-01 1 169256578 169256578 A G NME7 Silent p.C239C 0.08 TCGA-B6-A0X1-01 1 197024844 197024844 C T F13B Splice_Site p.X452_splice 0.09 TCGA-B6-A0X1-01 1 202931677 202931677 T A CYB5R1 Missense_Mutation p.Q299L 0.32 tolerated(0.06) benign(0.103) TCGA-B6-A0X1-01 1 231344862 231344862 C G TRIM67 Missense_Mutation p.H663Q 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-B6-A0X1-01 1 235715256 235715256 C G GNG4 3'UTR 0.38 TCGA-B6-A0X1-01 1 248652151 248652151 G A OR2T5 Missense_Mutation p.D88N 0.15 tolerated(0.33) benign(0.014) TCGA-B6-A0X1-01 1 3662660 3662660 G C TP73-AS1 RNA 0.28 TCGA-B6-A0X1-01 1 38280935 38280935 A C MTF1 Nonsense_Mutation p.L712* 0.05 TCGA-B6-A0X1-01 1 39500072 39500072 T C NDUFS5 Silent p.R75R 0.09 TCGA-B6-A0X1-01 1 46744951 46744951 C A LRRC41 Intron 0.29 TCGA-B6-A0X1-01 22 18220878 18220889 TGGCCACCTTCT - BID In_Frame_Del p.K203_A206del 0.51 TCGA-B6-A0X1-01 22 31302270 31302270 G A OSBP2 Missense_Mutation p.G899S 0.57 tolerated(0.06) probably_damaging(0.996) TCGA-B6-A0X1-01 2 107040638 107040638 C T RGPD3 Missense_Mutation p.S1262N 0.05 tolerated(0.16) benign(0.006) TCGA-B6-A0X1-01 2 162849872 162849872 C T DPP4 Missense_Mutation p.G741E 0.56 deleterious(0) probably_damaging(0.965) TCGA-B6-A0X1-01 2 179613845 179613845 A G TTN Intron 0.43 TCGA-B6-A0X1-01 2 203826027 203826027 A G CARF Missense_Mutation p.H237R 0.34 deleterious(0) probably_damaging(0.999) TCGA-B6-A0X1-01 2 27454419 27454419 G C CAD Missense_Mutation p.D791H 0.36 deleterious(0.04) possibly_damaging(0.616) TCGA-B6-A0X1-01 3 100035010 100035010 G C TBC1D23 Missense_Mutation p.D556H 0.05 deleterious(0) probably_damaging(0.985) TCGA-B6-A0X1-01 3 112358633 112358633 C A CCDC80 Missense_Mutation p.L40F 0.38 tolerated_low_confidence(0.12) benign(0.004) TCGA-B6-A0X1-01 3 123337588 123337588 C T MYLK Missense_Mutation p.V1800I 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-B6-A0X1-01 3 128973853 128973853 G C COPG1 Missense_Mutation p.R142P 0.17 deleterious(0) probably_damaging(0.991) TCGA-B6-A0X1-01 3 129249834 129249834 C T RHO Silent p.F159F 0.12 TCGA-B6-A0X1-01 3 138117362 138117362 G C MRAS Missense_Mutation p.L133F 0.08 tolerated(0.12) benign(0.015) TCGA-B6-A0X1-01 3 174814609 174814609 G A NAALADL2 Missense_Mutation p.A25T 0.06 deleterious(0.01) probably_damaging(0.931) TCGA-B6-A0X1-01 3 182554293 182554293 G A ATP11B Intron 0.41 TCGA-B6-A0X1-01 3 184297496 184297496 G C EPHB3 Missense_Mutation p.R649P 0.29 deleterious(0.02) probably_damaging(0.937) TCGA-B6-A0X1-01 3 186953802 186953802 A T MASP1 Nonsense_Mutation p.Y619* 0.27 TCGA-B6-A0X1-01 3 190147319 190147319 C T TMEM207 3'UTR 0.43 TCGA-B6-A0X1-01 3 50402899 50402899 C T CACNA2D2 Missense_Mutation p.E1003K 0.57 tolerated(0.16) possibly_damaging(0.503) TCGA-B6-A0X1-01 3 97677945 97677945 C G MINA Missense_Mutation p.V211L 0.54 tolerated(0.16) benign(0.038) TCGA-B6-A0X1-01 4 54011747 54011747 G A SCFD2 Silent p.S438S 0.30 TCGA-B6-A0X1-01 5 140588586 140588586 T C PCDHB12 Missense_Mutation p.M36T 0.60 tolerated_low_confidence(0.4) benign(0.001) TCGA-B6-A0X1-01 5 141059669 141059669 G C ARAP3 Missense_Mutation p.P129A 0.14 tolerated(0.14) benign(0) TCGA-B6-A0X1-01 5 176308510 176308510 C T HK3 Missense_Mutation p.R807Q 0.36 tolerated(0.14) possibly_damaging(0.599) TCGA-B6-A0X1-01 5 38881757 38881757 C G OSMR Silent p.L103L 0.38 TCGA-B6-A0X1-01 6 111656718 111656718 C G REV3L Missense_Mutation p.R2545T 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-B6-A0X1-01 6 46604213 46604213 C G CYP39A1 Missense_Mutation p.W215C 0.08 deleterious(0) probably_damaging(0.987) TCGA-B6-A0X1-01 6 50791402 50791402 C T TFAP2B Silent p.L122L 0.45 TCGA-B6-A0X1-01 6 90402230 90402230 G A MDN1 Missense_Mutation p.R3507C 0.40 possibly_damaging(0.836) TCGA-B6-A0X1-01 7 142162382 142162382 G A TRBV6-6 5'UTR 0.22 TCGA-B6-A0X1-01 7 6820477 6820477 C T RSPH10B2 Silent p.L523L 0.68 TCGA-B6-A0X1-01 7 87179817 87179817 A G ABCB1 Silent p.V397V 0.04 TCGA-B6-A0X1-01 7 92731943 92731943 T A SAMD9 Silent p.A1156A 0.06 TCGA-B6-A0X1-01 7 93112145 93112145 T G CALCR Intron 0.45 TCGA-B6-A0X1-01 7 99366036 99366036 A C CYP3A4 Missense_Mutation p.V204G 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-B6-A0X1-01 8 35608205 35608205 G T UNC5D Nonsense_Mutation p.E681* 0.75 TCGA-B6-A0X1-01 8 72959429 72959449 AAATCTAAAAGTACCTTTGAA - TRPA1 Splice_Site p.X636_splice 0.32 TCGA-B6-A0X1-01 8 94792942 94792942 C T TMEM67 Missense_Mutation p.A279V 0.06 tolerated(0.23) benign(0.006) TCGA-B6-A0X1-01 9 15451369 15451369 A G SNAPC3 Missense_Mutation p.K262E 0.41 tolerated(0.59) benign(0.155) TCGA-B6-A0X1-01 9 19123610 19123610 C G PLIN2 Missense_Mutation p.D88H 0.07 deleterious(0) probably_damaging(0.997) TCGA-B6-A0X1-01 9 79634614 79634614 C T FOXB2 Missense_Mutation p.P15L 0.23 deleterious(0) unknown(0) TCGA-B6-A0X1-01 X 106331858 106331858 C G RBM41 Missense_Mutation p.Q245H 0.41 tolerated(0.21) probably_damaging(0.969) TCGA-B6-A0X1-01 X 12904665 12904679 TCTGTCTTTCAATTT - TLR7 In_Frame_Del p.L347_F351del 0.17 TCGA-B6-A0X1-01 X 3592796 3592796 A C PRKX Missense_Mutation p.F60V 0.27 deleterious(0) probably_damaging(0.979) TCGA-B6-A0X1-01 X 48932526 48932526 T C WDR45 Missense_Mutation p.D341G 0.41 tolerated(0.08) possibly_damaging(0.783) TCGA-B6-A0X1-01 X 5810661 5810661 A G NLGN4X 3'UTR 0.18 TCGA-B6-A0X1-01 X 69650939 69650939 C G GDPD2 Missense_Mutation p.P475A 0.34 tolerated_low_confidence(0.83) benign(0.001) TCGA-B6-A0X1-01 X 72092354 72092354 G C DMRTC1 Missense_Mutation p.R171G 0.15 tolerated(0.31) benign(0.009) TCGA-B6-A0X4-01 10 8115841 8115842 - CTCCAGACACATGTCCTCC GATA3 Frame_Shift_Ins p.S405Qfs*109 0.21 TCGA-B6-A0X4-01 11 60889145 60889145 G A CD5 Missense_Mutation p.E290K 0.24 deleterious(0) probably_damaging(0.993) TCGA-B6-A0X4-01 11 62931501 62931501 C T SLC22A25 Missense_Mutation p.G480E 0.25 deleterious(0) benign(0.213) TCGA-B6-A0X4-01 13 23909753 23909753 C A SACS Missense_Mutation p.K2754N 0.23 probably_damaging(0.997) TCGA-B6-A0X4-01 14 101201147 101201147 G A DLK1 Missense_Mutation p.G356R 0.47 deleterious(0.04) probably_damaging(1) TCGA-B6-A0X4-01 16 85701963 85701963 G - GSE1 Frame_Shift_Del p.E1117Kfs*21 0.33 TCGA-B6-A0X4-01 17 11998898 11998898 C T MAP2K4 Missense_Mutation p.R134W 0.40 deleterious(0) benign(0.115) TCGA-B6-A0X4-01 19 44933794 44933794 G A ZNF229 Nonsense_Mutation p.R388* 0.52 TCGA-B6-A0X4-01 19 9005718 9005718 C T MUC16 Missense_Mutation p.G13230R 0.33 probably_damaging(0.988) TCGA-B6-A0X4-01 1 118491067 118491067 C A WDR3 Missense_Mutation p.L488M 0.42 tolerated(0.07) benign(0.423) TCGA-B6-A0X4-01 1 154303935 154303935 G A ATP8B2 Missense_Mutation p.D140N 0.57 deleterious(0) probably_damaging(0.997) TCGA-B6-A0X4-01 1 161641360 161641360 C T FCGR2B Silent p.N104N 0.29 TCGA-B6-A0X4-01 1 215759936 215759936 C T KCTD3 Missense_Mutation p.P242L 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-B6-A0X4-01 1 47533338 47533338 A C CYP4Z1 Missense_Mutation p.E59A 0.39 tolerated(0.05) benign(0.031) TCGA-B6-A0X4-01 2 219301940 219301940 C A VIL1 Missense_Mutation p.R689S 0.25 deleterious(0.01) probably_damaging(1) TCGA-B6-A0X4-01 3 145912059 145912059 G C PLSCR4 3'UTR 0.29 TCGA-B6-A0X4-01 3 160095282 160095282 T A IFT80 Silent p.V102V 0.36 TCGA-B6-A0X4-01 5 176942001 176942001 G A DDX41 Silent p.P238P 0.09 TCGA-B6-A0X4-01 5 35013131 35013131 C T AGXT2 Silent p.A372A 0.55 TCGA-B6-A0X4-01 6 102337557 102337557 C T GRIK2 Nonsense_Mutation p.R523* 0.26 TCGA-B6-A0X4-01 6 125397899 125397899 C T RNF217 Nonsense_Mutation p.R168* 0.44 TCGA-B6-A0X4-01 7 151945601 151945601 C A KMT2C Nonsense_Mutation p.E640* 0.40 TCGA-B6-A0X4-01 8 124358377 124358377 A C ATAD2 Missense_Mutation p.I827M 0.39 tolerated(0.2) benign(0.007) TCGA-B6-A0X4-01 X 153063795 153063795 C T SSR4 Silent p.N143N 0.49 TCGA-B6-A0X5-01 11 64897543 64897543 C G SYVN1 Missense_Mutation p.E447Q 0.50 tolerated(0.62) unknown(0) TCGA-B6-A0X5-01 11 6584617 6584617 C T DNHD1 Silent p.S3225S 0.17 TCGA-B6-A0X5-01 12 51736375 51736375 C T CELA1 Missense_Mutation p.D104N 0.50 tolerated(1) benign(0) TCGA-B6-A0X5-01 12 53819568 53819568 G T AMHR2 Missense_Mutation p.Q239H 0.50 tolerated(0.11) possibly_damaging(0.522) TCGA-B6-A0X5-01 13 39616426 39616426 G A NHLRC3 Silent p.L190L 0.78 TCGA-B6-A0X5-01 14 50267209 50267209 C A NEMF Missense_Mutation p.M767I 0.44 tolerated(0.19) benign(0) TCGA-B6-A0X5-01 14 80328256 80328256 G A NRXN3 Silent p.S1045S 0.50 TCGA-B6-A0X5-01 16 1605070 1605070 G A TMEM204 3'UTR 0.33 TCGA-B6-A0X5-01 17 10535868 10535868 C A MYH3 Missense_Mutation p.E1627D 0.10 deleterious(0) probably_damaging(0.983) TCGA-B6-A0X5-01 17 6590917 6590918 - A SLC13A5 Frame_Shift_Ins p.M503Hfs*22 0.39 TCGA-B6-A0X5-01 17 8011882 8011882 A C ALOXE3 Missense_Mutation p.Y662D 0.29 deleterious(0) probably_damaging(0.992) TCGA-B6-A0X5-01 19 10078731 10078731 G A COL5A3 Silent p.L1447L 0.50 TCGA-B6-A0X5-01 19 11095980 11095980 C T SMARCA4 Missense_Mutation p.S85L 0.61 benign(0.003) TCGA-B6-A0X5-01 19 46971695 46971695 C A PNMAL1 3'UTR 0.10 TCGA-B6-A0X5-01 19 47994082 47994082 G A NAPA Missense_Mutation p.P233L 0.67 deleterious(0) benign(0.249) TCGA-B6-A0X5-01 19 50804951 50804951 C T MYH14 Missense_Mutation p.R1835C 0.59 deleterious(0) probably_damaging(1) TCGA-B6-A0X5-01 19 6416411 6416411 A G KHSRP Missense_Mutation p.L499P 0.62 deleterious(0.04) possibly_damaging(0.902) TCGA-B6-A0X5-01 1 112525097 112525097 G A KCND3 Silent p.F84F 0.64 TCGA-B6-A0X5-01 1 115168327 115168327 A G DENND2C Silent p.S93S 0.11 TCGA-B6-A0X5-01 1 153912954 153912954 C T DENND4B Silent p.P485P 0.47 TCGA-B6-A0X5-01 1 173780350 173780350 G A CENPL Nonsense_Mutation p.R30* 0.30 TCGA-B6-A0X5-01 1 17668504 17668504 T C PADI4 Missense_Mutation p.V240A 0.58 tolerated(0.5) benign(0.174) TCGA-B6-A0X5-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.35 TCGA-B6-A0X5-01 1 70644531 70644531 T C LRRC40 Intron 0.25 TCGA-B6-A0X5-01 2 179427225 179427225 A G TTN Silent p.N27878N 0.47 TCGA-B6-A0X5-01 2 2001120 2001120 C T MYT1L Splice_Site 0.42 TCGA-B6-A0X5-01 2 234055010 234055010 C T INPP5D Intron 0.23 TCGA-B6-A0X5-01 2 234959682 234959682 G T SPP2 Silent p.V51V 0.48 TCGA-B6-A0X5-01 2 84517924 84517924 G C FUNDC2P2 RNA 0.47 TCGA-B6-A0X5-01 2 85769379 85769379 A G MAT2A Silent p.E217E 0.47 TCGA-B6-A0X5-01 3 123512533 123512533 G A MYLK Silent p.F52F 0.30 TCGA-B6-A0X5-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.38 tolerated(0.11) possibly_damaging(0.529) TCGA-B6-A0X5-01 3 18390811 18390811 C T SATB1 Missense_Mutation p.D747N 0.14 deleterious(0.04) possibly_damaging(0.56) TCGA-B6-A0X5-01 3 183956482 183956482 G A VWA5B2 Missense_Mutation p.E675K 0.44 deleterious(0.01) probably_damaging(0.964) TCGA-B6-A0X5-01 4 187539727 187539727 G T FAT1 Missense_Mutation p.F2671L 0.47 probably_damaging(0.999) TCGA-B6-A0X5-01 4 3318059 3318059 T G RGS12 Missense_Mutation p.D54E 0.65 tolerated(0.13) possibly_damaging(0.638) TCGA-B6-A0X5-01 4 66189775 66189775 C T EPHA5 3'UTR 0.10 TCGA-B6-A0X5-01 5 140517278 140517278 G T PCDHB5 Missense_Mutation p.L754F 0.14 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-B6-A0X5-01 5 77523987 77523987 G C AP3B1 Missense_Mutation p.T119S 0.52 tolerated(0.05) possibly_damaging(0.531) TCGA-B6-A0X5-01 5 78415130 78415130 A C BHMT Missense_Mutation p.Q72P 0.11 deleterious(0) probably_damaging(0.996) TCGA-B6-A0X5-01 6 169053691 169053691 C A SMOC2 Missense_Mutation p.F367L 0.14 deleterious(0) probably_damaging(0.966) TCGA-B6-A0X5-01 7 100958513 100958513 G C RABL5 Missense_Mutation p.P154A 0.05 tolerated(0.23) possibly_damaging(0.847) TCGA-B6-A0X5-01 7 107664285 107664285 T C LAMB4 3'UTR 0.47 TCGA-B6-A0X5-01 7 122635425 122635425 A - TAS2R16 Frame_Shift_Del p.F88Lfs*8 0.32 TCGA-B6-A0X5-01 7 31920438 31920438 T C PDE1C Missense_Mutation p.E115G 0.08 deleterious(0) probably_damaging(0.999) TCGA-B6-A0X5-01 8 133829783 133829784 - G PHF20L1 Frame_Shift_Ins p.A525Gfs*23 0.21 TCGA-B6-A0X5-01 8 21844661 21844661 G T XPO7 Missense_Mutation p.Q529H 0.82 deleterious(0) probably_damaging(0.96) TCGA-B6-A0X5-01 8 56985781 56985781 C G RPS20 Silent p.T76T 0.56 TCGA-B6-A0X5-01 8 87470148 87470148 A G WWP1 Splice_Site p.X799_splice 0.04 TCGA-B6-A0X5-01 X 138845570 138845570 C A ATP11C Missense_Mutation p.R803I 0.44 deleterious(0) possibly_damaging(0.908) TCGA-B6-A0X5-01 X 141291280 141291280 G A MAGEC2 Missense_Mutation p.A165V 0.14 tolerated(0.05) possibly_damaging(0.673) TCGA-B6-A0X5-01 X 16717156 16717156 C A CTPS2 Missense_Mutation p.R76I 0.07 deleterious(0) probably_damaging(0.993) TCGA-B6-A0X7-01 10 5937117 5937117 G T FBXO18 Missense_Mutation p.A41S 0.19 deleterious_low_confidence(0) benign(0.001) TCGA-B6-A0X7-01 12 88474172 88474172 C T CEP290 Silent p.Q1671Q 0.26 TCGA-B6-A0X7-01 14 106321751 106321751 C T IGHM Silent p.T161T 0.27 TCGA-B6-A0X7-01 14 31355112 31355112 G A COCH Missense_Mutation p.M357I 0.22 tolerated(0.17) benign(0.008) TCGA-B6-A0X7-01 16 683760 683760 C T WFIKKN1 Silent p.A450A 0.39 TCGA-B6-A0X7-01 16 68857390 68857405 AGACCAAGTGACCACC - CDH1 Frame_Shift_Del p.K675Nfs*2 0.17 TCGA-B6-A0X7-01 19 12502923 12502923 G A ZNF799 Missense_Mutation p.L97F 0.10 tolerated(0.73) possibly_damaging(0.642) TCGA-B6-A0X7-01 19 42410160 42410160 C T ARHGEF1 Missense_Mutation p.A840V 0.29 deleterious(0.01) possibly_damaging(0.661) TCGA-B6-A0X7-01 19 54682423 54682423 G A MBOAT7 Intron 0.39 TCGA-B6-A0X7-01 19 56465998 56465998 C G NLRP8 Missense_Mutation p.L192V 0.04 deleterious(0) benign(0.249) TCGA-B6-A0X7-01 1 156784870 156784870 G A SH2D2A Silent p.H89H 0.21 TCGA-B6-A0X7-01 1 215820992 215820992 G A USH2A Missense_Mutation p.T4888M 0.22 benign(0.009) TCGA-B6-A0X7-01 20 61340826 61340826 G A NTSR1 Silent p.A89A 0.28 TCGA-B6-A0X7-01 20 62038263 62038263 C T KCNQ2 Missense_Mutation p.D785N 0.32 deleterious(0) probably_damaging(0.998) TCGA-B6-A0X7-01 2 182413553 182413553 G A CERKL Silent p.F335F 0.06 TCGA-B6-A0X7-01 2 39963761 39963761 G A THUMPD2 3'UTR 0.33 TCGA-B6-A0X7-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-B6-A0X7-01 3 50413608 50413608 G A CACNA2D2 Silent p.N546N 0.29 TCGA-B6-A0X7-01 3 53765129 53765131 AAC - CACNA1D In_Frame_Del p.N809del 0.25 TCGA-B6-A0X7-01 4 125591576 125591576 G A ANKRD50 Silent p.I952I 0.08 TCGA-B6-A0X7-01 4 38777170 38777172 AAC - TLR10 In_Frame_Del p.V14del 0.22 TCGA-B6-A0X7-01 6 168312077 168312077 C T MLLT4 Nonsense_Mutation p.Q649* 0.15 TCGA-B6-A0X7-01 7 48494768 48494768 G T ABCA13 Missense_Mutation p.V4234F 0.50 probably_damaging(0.996) TCGA-B6-A0X7-01 8 113841931 113841931 T G CSMD3 Silent p.R615R 0.38 TCGA-B6-A0X7-01 X 41025364 41025364 G A USP9X Missense_Mutation p.R742Q 0.25 deleterious(0.02) probably_damaging(0.945) TCGA-B6-A0X7-01 X 84563138 84563138 C T POF1B Missense_Mutation p.D348N 0.06 deleterious(0) probably_damaging(0.999) TCGA-B6-A1KN-01 10 118030396 118030396 C A GFRA1 Missense_Mutation p.R91L 0.06 deleterious(0) probably_damaging(0.999) TCGA-B6-A1KN-01 10 16916414 16916414 C G CUBN Silent p.L3065L 0.51 TCGA-B6-A1KN-01 10 50118079 50118079 A G LRRC18 3'UTR 0.26 TCGA-B6-A1KN-01 11 10500146 10500146 C T AMPD3 Missense_Mutation p.P108S 0.37 tolerated(0.97) benign(0.001) TCGA-B6-A1KN-01 11 11394113 11394113 C T GALNT18 Silent p.L347L 0.29 TCGA-B6-A1KN-01 11 66999078 66999078 G A KDM2A Missense_Mutation p.E376K 0.43 tolerated(0.2) benign(0) TCGA-B6-A1KN-01 11 68030078 68030078 C T C11orf24 Missense_Mutation p.A129T 0.22 tolerated(0.13) unknown(0) TCGA-B6-A1KN-01 12 100732846 100732846 A T SCYL2 Missense_Mutation p.M896L 0.18 tolerated_low_confidence(0.28) benign(0) TCGA-B6-A1KN-01 12 11338943 11338943 G T TAS2R42 Missense_Mutation p.L201I 0.33 deleterious(0.01) probably_damaging(0.94) TCGA-B6-A1KN-01 12 24989509 24989509 G A BCAT1 Missense_Mutation p.P292L 0.38 deleterious(0) probably_damaging(0.999) TCGA-B6-A1KN-01 12 25362626 25362626 G T KRAS 3'UTR 0.46 TCGA-B6-A1KN-01 12 57604136 57604136 C A LRP1 Missense_Mutation p.S4209R 0.17 benign(0.393) TCGA-B6-A1KN-01 13 31714438 31714438 C A HSPH1 Missense_Mutation p.M621I 0.33 deleterious(0) probably_damaging(0.989) TCGA-B6-A1KN-01 13 75880582 75880582 T G TBC1D4 Missense_Mutation p.R873S 0.72 tolerated(0.07) probably_damaging(0.998) TCGA-B6-A1KN-01 13 99890758 99890758 T C UBAC2 Missense_Mutation p.C37R 0.35 tolerated(0.21) benign(0.081) TCGA-B6-A1KN-01 15 23811029 23811029 G A MKRN3 Missense_Mutation p.V34I 0.30 tolerated(0.48) benign(0.001) TCGA-B6-A1KN-01 15 23890304 23890304 G T MAGEL2 Silent p.P259P 0.11 TCGA-B6-A1KN-01 16 22563705 22563705 T C RP11-368J21.3 Intron 0.09 TCGA-B6-A1KN-01 16 25228619 25228619 G T AQP8 Missense_Mutation p.C38F 0.40 deleterious(0) probably_damaging(0.996) TCGA-B6-A1KN-01 16 31097783 31097783 G A PRSS53 Missense_Mutation p.R180C 0.39 deleterious(0.01) probably_damaging(0.976) TCGA-B6-A1KN-01 17 18565357 18565357 T C ZNF286B Missense_Mutation p.T488A 0.28 tolerated(0.06) benign(0.444) TCGA-B6-A1KN-01 17 30665245 30665245 G A C17orf75 Missense_Mutation p.S158F 0.18 deleterious(0) probably_damaging(0.956) TCGA-B6-A1KN-01 17 39261786 39261786 G A KRTAP4-9 Missense_Mutation p.C49Y 0.10 deleterious(0) unknown(0) TCGA-B6-A1KN-01 17 7577144 7577144 A G TP53 Missense_Mutation p.L265P 0.59 deleterious(0) probably_damaging(1) TCGA-B6-A1KN-01 19 38189031 38189031 A G ZNF607 Silent p.H667H 0.25 TCGA-B6-A1KN-01 19 9770066 9770066 T C ZNF562 Missense_Mutation p.N35D 0.61 tolerated(0.26) benign(0.002) TCGA-B6-A1KN-01 19 9967532 9967532 C T OLFM2 Missense_Mutation p.R213H 0.24 deleterious(0) probably_damaging(0.998) TCGA-B6-A1KN-01 1 100573002 100573002 C A SASS6 Missense_Mutation p.K418N 0.33 deleterious(0.01) probably_damaging(0.945) TCGA-B6-A1KN-01 1 100585955 100585955 G C SASS6 Missense_Mutation p.R182G 0.09 deleterious(0) benign(0.003) TCGA-B6-A1KN-01 1 111739850 111739850 G A DENND2D Missense_Mutation p.P151L 0.57 deleterious(0) probably_damaging(1) TCGA-B6-A1KN-01 1 151262711 151262711 G T ZNF687 Splice_Site p.X1026_splice 0.12 TCGA-B6-A1KN-01 1 155851077 155851077 C A SYT11 Silent p.I358I 0.18 TCGA-B6-A1KN-01 1 155874570 155874570 A T RIT1 Silent p.R80R 0.52 TCGA-B6-A1KN-01 1 163325529 163325529 A T NUF2 3'UTR 0.18 TCGA-B6-A1KN-01 1 172526472 172526472 C T SUCO Nonsense_Mutation p.Q166* 0.15 TCGA-B6-A1KN-01 1 205275345 205275345 C A NUAK2 Missense_Mutation p.V221F 0.09 tolerated(0.13) probably_damaging(0.921) TCGA-B6-A1KN-01 1 32202284 32202286 AAG - BAI2 In_Frame_Del p.F1007del 0.35 TCGA-B6-A1KN-01 21 38390212 38390212 G A RIPPLY3 Missense_Mutation p.R93Q 0.16 tolerated(1) benign(0) TCGA-B6-A1KN-01 21 41032794 41032794 C T B3GALT5 Missense_Mutation p.A103V 0.31 tolerated(0.27) benign(0.005) TCGA-B6-A1KN-01 22 37326821 37326821 G A CSF2RB Missense_Mutation p.V321I 0.50 tolerated(0.19) benign(0.191) TCGA-B6-A1KN-01 22 38083918 38083918 G A NOL12 Missense_Mutation p.E29K 0.59 deleterious(0.01) possibly_damaging(0.805) TCGA-B6-A1KN-01 22 50512644 50512644 C T MLC1 Splice_Site p.X238_splice 0.62 TCGA-B6-A1KN-01 2 176812363 176812363 T A KIAA1715 Missense_Mutation p.N184I 0.21 tolerated(0.18) benign(0.418) TCGA-B6-A1KN-01 2 179444184 179444184 G A TTN Intron 0.44 TCGA-B6-A1KN-01 2 191895699 191895700 GC - STAT4 Frame_Shift_Del p.A740Nfs*8 0.18 TCGA-B6-A1KN-01 2 242038987 242038987 A C MTERFD2 Missense_Mutation p.V115G 0.21 tolerated(0.13) benign(0.259) TCGA-B6-A1KN-01 2 73438003 73438003 C A NOTO Missense_Mutation p.S234R 0.17 deleterious(0.03) benign(0.307) TCGA-B6-A1KN-01 2 88826006 88826006 G A TEX37 Silent p.T37T 0.21 TCGA-B6-A1KN-01 3 101375072 101375072 G C ZBTB11 Missense_Mutation p.I689M 0.38 deleterious(0.03) probably_damaging(0.914) TCGA-B6-A1KN-01 3 9783057 9783057 T G BRPF1 Missense_Mutation p.H596Q 0.12 tolerated(0.19) probably_damaging(0.994) TCGA-B6-A1KN-01 4 146576496 146576496 T G MMAA Missense_Mutation p.I389M 0.35 deleterious(0.01) possibly_damaging(0.49) TCGA-B6-A1KN-01 4 187130348 187130348 C T CYP4V2 Missense_Mutation p.R443W 0.44 deleterious(0) probably_damaging(1) TCGA-B6-A1KN-01 4 38029467 38029467 T C TBC1D1 Silent p.N423N 0.21 TCGA-B6-A1KN-01 5 138269781 138269781 C T CTNNA1 3'UTR 0.33 TCGA-B6-A1KN-01 5 139909280 139909295 TGGGTAACTCAGTGCT - ANKHD1 Frame_Shift_Del p.G2251Dfs*164 0.32 TCGA-B6-A1KN-01 5 140022616 140022616 A C TMCO6 Missense_Mutation p.I266L 0.39 tolerated(0.52) benign(0.005) TCGA-B6-A1KN-01 5 140725865 140725865 C T PCDHGA3 Silent p.H755H 0.06 TCGA-B6-A1KN-01 5 71739680 71739680 G T ZNF366 Missense_Mutation p.S713Y 0.21 deleterious_low_confidence(0) benign(0.424) TCGA-B6-A1KN-01 6 86181085 86181085 G T NT5E Missense_Mutation p.Q231H 0.23 deleterious(0.01) benign(0.222) TCGA-B6-A1KN-01 7 100679631 100679631 G A MUC17 Missense_Mutation p.S1645N 0.16 probably_damaging(0.958) TCGA-B6-A1KN-01 7 113558745 113558745 C A PPP1R3A Nonsense_Mutation p.E103* 0.25 TCGA-B6-A1KN-01 7 72420193 72420193 G A POM121 3'UTR 0.33 TCGA-B6-A1KN-01 7 75617758 75617758 G A POR 3'Flank 0.28 TCGA-B6-A1KN-01 8 103312349 103312349 C G UBR5 Silent p.S995S 0.06 TCGA-B6-A1KN-01 8 124121848 124121848 G C TBC1D31 Missense_Mutation p.R475T 0.09 deleterious(0) probably_damaging(0.99) TCGA-B6-A1KN-01 8 48697854 48697855 - T PRKDC Frame_Shift_Ins p.H3642Tfs*8 0.23 TCGA-B6-A1KN-01 8 67578547 67578547 T G VCPIP1 Missense_Mutation p.D216A 0.16 deleterious(0) probably_damaging(1) TCGA-B6-A1KN-01 8 99168291 99168291 A G POP1 Missense_Mutation p.K691E 0.07 deleterious(0) probably_damaging(1) TCGA-B6-A1KN-01 9 136198875 136198875 G A SURF6 Missense_Mutation p.R306W 0.18 deleterious(0) possibly_damaging(0.898) TCGA-B6-A1KN-01 9 94984847 94984847 G C IARS Missense_Mutation p.R1221G 0.11 deleterious_low_confidence(0) possibly_damaging(0.545) TCGA-B6-A1KN-01 X 118752562 118752562 G A SEPT6 3'UTR 0.41 TCGA-B6-A1KN-01 X 129155089 129155089 C A BCORL1 Missense_Mutation p.Q1191K 0.35 benign(0.2) TCGA-B6-A1KN-01 X 153130895 153130895 G A L1CAM Missense_Mutation p.H870Y 0.19 tolerated(0.32) benign(0.005) TCGA-B6-A1KN-01 X 18824526 18824526 G A PPEF1 Silent p.V419V 0.29 TCGA-B6-A1KN-01 X 50377358 50377358 C T SHROOM4 Missense_Mutation p.G572E 0.16 deleterious(0.01) possibly_damaging(0.748) TCGA-B6-A1KN-01 X 62917053 62917053 G A ARHGEF9 Silent p.N171N 0.16 TCGA-B6-A2IU-01 10 31134088 31134088 A G ZNF438 Silent p.P763P 0.13 TCGA-B6-A2IU-01 11 106810212 106810212 C T GUCY1A2 Missense_Mutation p.A394T 0.27 tolerated(0.58) benign(0.026) TCGA-B6-A2IU-01 11 117063014 117063014 C T SIDT2 Silent p.I639I 0.29 TCGA-B6-A2IU-01 11 61252873 61252873 G A PPP1R32 Missense_Mutation p.D192N 0.21 deleterious(0.05) probably_damaging(1) TCGA-B6-A2IU-01 12 110778473 110778473 A G ATP2A2 Missense_Mutation p.T591A 0.37 deleterious(0) probably_damaging(0.964) TCGA-B6-A2IU-01 12 112096541 112096541 T G BRAP Missense_Mutation p.E407A 0.31 deleterious(0) probably_damaging(0.999) TCGA-B6-A2IU-01 12 124008165 124008165 G A RILPL1 Nonsense_Mutation p.R113* 0.36 TCGA-B6-A2IU-01 12 12871244 12871244 C T CDKN1B Silent p.T157T 0.31 TCGA-B6-A2IU-01 12 4722727 4722727 G A DYRK4 Silent p.T457T 0.28 TCGA-B6-A2IU-01 13 96506620 96506620 C T UGGT2 Nonsense_Mutation p.W1373* 0.24 TCGA-B6-A2IU-01 15 33855084 33855084 G A RYR3 Missense_Mutation p.G340D 0.36 probably_damaging(1) TCGA-B6-A2IU-01 15 49611904 49611904 C T GALK2 Silent p.V357V 0.33 TCGA-B6-A2IU-01 16 68842647 68842647 C T CDH1 Nonsense_Mutation p.Q195* 0.36 TCGA-B6-A2IU-01 16 7382920 7382920 G A RBFOX1 5'UTR 0.26 TCGA-B6-A2IU-01 17 30625209 30625209 C T RHBDL3 Missense_Mutation p.A256V 0.33 tolerated(0.05) possibly_damaging(0.803) TCGA-B6-A2IU-01 17 35506834 35506834 A G ACACA Missense_Mutation p.V1878A 0.24 deleterious(0.01) possibly_damaging(0.539) TCGA-B6-A2IU-01 17 39988648 39988648 C T NT5C3B Missense_Mutation p.E104K 0.35 deleterious(0.01) benign(0.077) TCGA-B6-A2IU-01 17 72875671 72875671 G A FADS6 Missense_Mutation p.R257W 0.47 deleterious(0) probably_damaging(1) TCGA-B6-A2IU-01 17 79180952 79180952 G A AZI1 Silent p.S120S 0.26 TCGA-B6-A2IU-01 17 80708405 80708405 C T FN3K Missense_Mutation p.P235L 0.19 deleterious(0) probably_damaging(0.999) TCGA-B6-A2IU-01 18 2913121 2913121 G A EMILIN2 Missense_Mutation p.E961K 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-B6-A2IU-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.36 deleterious(0.03) probably_damaging(1) TCGA-B6-A2IU-01 19 14523894 14523894 G A DDX39A Missense_Mutation p.R47W 0.27 deleterious(0) benign(0.03) TCGA-B6-A2IU-01 19 1465789 1465789 A C APC2 Missense_Mutation p.E830A 0.32 benign(0.103) TCGA-B6-A2IU-01 19 17756912 17756912 C T UNC13A Missense_Mutation p.A685T 0.36 deleterious(0) probably_damaging(1) TCGA-B6-A2IU-01 19 17897383 17897383 G A FCHO1 Nonsense_Mutation p.W809* 0.05 TCGA-B6-A2IU-01 19 35828818 35828818 G A CD22 Silent p.T293T 0.29 TCGA-B6-A2IU-01 19 53668566 53668566 G A ZNF665 Nonsense_Mutation p.Q393* 0.35 TCGA-B6-A2IU-01 19 54198526 54198526 C T MIR519B RNA 0.16 TCGA-B6-A2IU-01 1 115419390 115419390 G A SYCP1 Missense_Mutation p.E254K 0.33 tolerated(0.22) possibly_damaging(0.771) TCGA-B6-A2IU-01 1 19577940 19577940 C T EMC1 Missense_Mutation p.V22I 0.35 tolerated(0.1) benign(0.422) TCGA-B6-A2IU-01 1 222801721 222801721 A G MIA3 Missense_Mutation p.I387V 0.12 tolerated(0.57) benign(0.002) TCGA-B6-A2IU-01 1 238046085 238046085 G T ZP4 Silent p.P484P 0.18 TCGA-B6-A2IU-01 20 45174553 45174553 C T OCSTAMP Missense_Mutation p.E154K 0.30 tolerated(0.55) possibly_damaging(0.864) TCGA-B6-A2IU-01 3 52568585 52568585 G A NT5DC2 5'Flank 0.30 TCGA-B6-A2IU-01 4 98893477 98893477 G A STPG2 Missense_Mutation p.S296L 0.15 tolerated(1) benign(0) TCGA-B6-A2IU-01 5 149212395 149212395 C G PPARGC1B Missense_Mutation p.D253E 0.26 tolerated(0.17) probably_damaging(0.999) TCGA-B6-A2IU-01 5 76788107 76788107 C T WDR41 5'UTR 0.16 TCGA-B6-A2IU-01 5 90077353 90077353 G A GPR98 Missense_Mutation p.E4397K 0.08 possibly_damaging(0.874) TCGA-B6-A2IU-01 6 152529115 152529115 C A SYNE1 Nonsense_Mutation p.E7606* 0.11 TCGA-B6-A2IU-01 6 46669668 46669668 G A TDRD6 3'UTR 0.39 TCGA-B6-A2IU-01 7 5567343 5567343 C G ACTB 3'UTR 0.25 TCGA-B6-A2IU-01 7 7283157 7283157 T G C1GALT1 Silent p.G297G 0.35 TCGA-B6-A2IU-01 7 97921907 97921907 G A BAIAP2L1 3'UTR 0.29 TCGA-B6-A2IU-01 8 56686187 56686187 G A TGS1 Missense_Mutation p.E4K 0.11 tolerated(0.12) benign(0.027) TCGA-B6-A2IU-01 9 100962632 100962632 T C TBC1D2 Intron 0.35 TCGA-B6-A2IU-01 9 133760836 133760845 CAGCGCAGTG - ABL1 Frame_Shift_Del p.S1073Wfs*12 0.31 TCGA-B6-A2IU-01 9 35563829 35563829 G A FAM166B 5'UTR 0.05 TCGA-B6-A2IU-01 X 105153759 105153759 C T NRK Missense_Mutation p.S710L 0.16 tolerated_low_confidence(0.23) benign(0.004) TCGA-B6-A2IU-01 X 134427658 134427658 C T ZNF75D Missense_Mutation p.E137K 0.17 tolerated(0.62) benign(0.391) TCGA-B6-A2IU-01 X 152159358 152159358 A G PNMA5 Missense_Mutation p.F262S 0.39 deleterious(0) probably_damaging(0.975) TCGA-B6-A2IU-01 X 27999269 27999269 G T DCAF8L1 Missense_Mutation p.N61K 0.34 tolerated_low_confidence(0.78) benign(0.016) TCGA-B6-A2IU-01 X 3248432 3248432 G A MXRA5 Silent p.Y112Y 0.19 TCGA-B6-A2IU-01 X 48164277 48164277 G A SSX9 RNA 0.31 TCGA-B6-A2IU-01 X 91131969 91131969 G A PCDH11X Missense_Mutation p.D244N 0.16 deleterious(0) probably_damaging(0.999) TCGA-B6-A401-01 10 73206136 73206136 C T CDH23 Silent p.S43S 0.24 TCGA-B6-A401-01 12 57674194 57674194 G C R3HDM2 Missense_Mutation p.L417V 0.13 tolerated(0.11) probably_damaging(0.996) TCGA-B6-A401-01 14 21543297 21543297 G T ARHGEF40 Nonsense_Mutation p.G470* 0.17 TCGA-B6-A401-01 14 37135796 37135796 A G PAX9 Missense_Mutation p.K254R 0.23 tolerated_low_confidence(0.08) benign(0) TCGA-B6-A401-01 14 69521489 69521489 G A DCAF5 Silent p.S638S 0.15 TCGA-B6-A401-01 16 75033986 75033986 G A ZNRF1 Silent p.S139S 0.48 TCGA-B6-A401-01 16 89256807 89256807 C T CDH15 Missense_Mutation p.P379S 0.20 deleterious(0.03) probably_damaging(0.973) TCGA-B6-A401-01 17 26603846 26603846 C T AC061975.8 5'Flank 0.26 TCGA-B6-A401-01 17 68172108 68172108 C T KCNJ2 Nonsense_Mutation p.Q310* 0.11 TCGA-B6-A401-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.61 tolerated(0.11) benign(0.308) TCGA-B6-A401-01 18 55020034 55020034 A T ST8SIA3 5'UTR 0.13 TCGA-B6-A401-01 19 42793200 42793200 C T CIC Silent p.D364D 0.38 TCGA-B6-A401-01 19 48306222 48306222 G A TPRX1 Missense_Mutation p.R16C 0.11 deleterious(0.02) unknown(0) TCGA-B6-A401-01 19 55758503 55758503 C T PPP6R1 Intron 0.12 TCGA-B6-A401-01 1 144598580 144598580 G A RP11-640M9.2 RNA 0.30 TCGA-B6-A401-01 3 170841435 170841435 C A TNIK Silent p.G690G 0.08 TCGA-B6-A401-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.43 deleterious(0.01) probably_damaging(1) TCGA-B6-A401-01 5 56180544 56180548 AAGAG - MAP3K1 Frame_Shift_Del p.E1293Dfs*14 0.11 TCGA-B6-A401-01 6 39159450 39159450 G A KCNK5 Missense_Mutation p.S239F 0.17 deleterious(0) probably_damaging(1) TCGA-B6-A401-01 7 100030663 100030663 G - MEPCE Frame_Shift_Del p.R598Pfs*18 0.08 TCGA-B6-A401-01 7 30094884 30094884 T C PLEKHA8 Missense_Mutation p.I322T 0.09 deleterious(0) probably_damaging(0.928) TCGA-B6-A401-01 7 75933541 75933541 C T HSPB1 3'UTR 0.14 TCGA-B6-A401-01 8 127568897 127568897 A C FAM84B Missense_Mutation p.S246R 0.08 deleterious(0.02) possibly_damaging(0.823) TCGA-B6-A401-01 8 145637803 145637803 G A SLC39A4 3'UTR 0.08 TCGA-B6-A401-01 9 21166406 21166406 T G IFNA21 Missense_Mutation p.N69T 0.30 tolerated(0.13) benign(0.117) TCGA-B6-A401-01 X 135586549 135586549 G A HTATSF1 Missense_Mutation p.R254Q 0.16 tolerated(0.08) benign(0.011) TCGA-B6-A401-01 X 144906243 144906243 C A SLITRK2 Missense_Mutation p.P767H 0.27 tolerated(0.06) probably_damaging(0.94) TCGA-B6-A401-01 X 147026497 147026497 G A FMR1 Missense_Mutation p.R527H 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-B6-A401-01 X 8433394 8433394 G A VCX3B 5'UTR 0.06 TCGA-B6-A401-01 X 9864212 9864212 C T SHROOM2 Missense_Mutation p.T755I 0.11 deleterious(0) probably_damaging(0.975) TCGA-B6-A409-01 10 126311318 126311318 C T FAM53B 3'UTR 0.26 TCGA-B6-A409-01 10 16960643 16960643 T C CUBN Silent p.G2326G 0.40 TCGA-B6-A409-01 10 50724809 50724809 C T ERCC6-PGBD3 Missense_Mutation p.D586N 0.52 tolerated_low_confidence(0.18) unknown(0) TCGA-B6-A409-01 11 64877238 64877238 G A VPS51 Missense_Mutation p.R574Q 0.10 tolerated(0.48) benign(0.022) TCGA-B6-A409-01 12 88928486 88928486 C T KITLG Intron 0.42 TCGA-B6-A409-01 12 95602823 95602823 G A FGD6 Missense_Mutation p.P746L 0.27 deleterious(0.01) possibly_damaging(0.82) TCGA-B6-A409-01 13 46065553 46065553 A G COG3 Silent p.Q325Q 0.32 TCGA-B6-A409-01 14 22102916 22102916 C G OR10G2 Missense_Mutation p.R28T 0.36 tolerated(0.08) benign(0.355) TCGA-B6-A409-01 14 57270978 57270978 C T OTX2 Silent p.K67K 0.19 TCGA-B6-A409-01 15 83561570 83561570 C T HOMER2 Missense_Mutation p.R10Q 0.12 deleterious(0) possibly_damaging(0.523) TCGA-B6-A409-01 16 1251677 1251677 C A CACNA1H Missense_Mutation p.F409L 0.11 deleterious(0) probably_damaging(0.994) TCGA-B6-A409-01 16 32063515 32063515 A G AC142381.1 Missense_Mutation p.I69V 0.12 benign(0.308) TCGA-B6-A409-01 17 43138787 43138787 C A NMT1 Nonsense_Mutation p.C30* 0.48 TCGA-B6-A409-01 17 7577525 7577526 - A TP53 Frame_Shift_Ins p.T253Hfs*11 0.31 TCGA-B6-A409-01 19 36244081 36244081 G A LIN37 Missense_Mutation p.R124H 0.11 tolerated(0.18) possibly_damaging(0.796) TCGA-B6-A409-01 19 38954140 38954140 C T RYR1 Silent p.R885R 0.33 TCGA-B6-A409-01 19 43519278 43519278 G C PSG11 Missense_Mutation p.I318M 0.07 deleterious(0) possibly_damaging(0.656) TCGA-B6-A409-01 1 154950513 154950513 T G CKS1B Missense_Mutation p.L37R 0.15 deleterious(0) probably_damaging(0.989) TCGA-B6-A409-01 1 155103837 155103837 A G EFNA1 Missense_Mutation p.I39V 0.11 tolerated(1) benign(0.001) TCGA-B6-A409-01 1 238644629 238644629 C A LINC01139 RNA 0.21 TCGA-B6-A409-01 1 97243302 97243302 C A PTBP2 Missense_Mutation p.H198Q 0.07 tolerated(0.2) benign(0.001) TCGA-B6-A409-01 20 17594817 17594817 A G RRBP1 3'UTR 0.35 TCGA-B6-A409-01 20 21492969 21492969 C T NKX2-2 Silent p.A138A 0.10 TCGA-B6-A409-01 20 44506183 44506183 G A ZSWIM3 Missense_Mutation p.R329K 0.30 tolerated(0.27) benign(0.053) TCGA-B6-A409-01 20 48504368 48504368 C T SLC9A8 Silent p.D563D 0.11 TCGA-B6-A409-01 21 34727701 34727702 AT - IFNAR1 Frame_Shift_Del p.I508Kfs*10 0.19 TCGA-B6-A409-01 21 43161116 43161116 C T RIPK4 Missense_Mutation p.R746Q 0.43 tolerated(0.38) benign(0.216) TCGA-B6-A409-01 21 43413758 43413758 G A ZBTB21 Silent p.V149V 0.31 TCGA-B6-A409-01 21 45178158 45178158 C G PDXK 3'UTR 0.09 TCGA-B6-A409-01 22 19708174 19708174 G A SEPT5 Silent p.R200R 0.37 TCGA-B6-A409-01 2 155102400 155102400 T G GALNT13 Silent p.T254T 0.08 TCGA-B6-A409-01 2 207530593 207530593 C A DYTN Splice_Site p.X380_splice 0.18 TCGA-B6-A409-01 2 55096450 55096450 C T EML6 Silent p.D728D 0.14 TCGA-B6-A409-01 2 87069193 87069193 C T CD8B Intron 0.10 TCGA-B6-A409-01 3 126290738 126290738 C T TXNRD3NB 3'UTR 0.23 TCGA-B6-A409-01 3 98620051 98620051 G T DCBLD2 Silent p.S40S 0.27 TCGA-B6-A409-01 4 46066490 46066490 T C GABRG1 Missense_Mutation p.D198G 0.15 deleterious(0) probably_damaging(0.997) TCGA-B6-A409-01 4 74357675 74357675 C T AFM Silent p.R310R 0.11 TCGA-B6-A409-01 5 175111006 175111006 G A HRH2 Missense_Mutation p.R257H 0.33 tolerated(0.14) probably_damaging(0.993) TCGA-B6-A409-01 5 31323071 31323071 C T CDH6 Silent p.L677L 0.08 TCGA-B6-A409-01 6 100838160 100838160 G A SIM1 3'UTR 0.24 TCGA-B6-A409-01 6 21594936 21594936 G T SOX4 Silent p.G57G 0.19 TCGA-B6-A409-01 6 2685633 2685633 C T MYLK4 Missense_Mutation p.V148M 0.20 deleterious(0) probably_damaging(0.991) TCGA-B6-A409-01 6 6182294 6182294 C A F13A1 Silent p.G462G 0.31 TCGA-B6-A409-01 6 75912469 75912469 C T COL12A1 Missense_Mutation p.A14T 0.12 benign(0.011) TCGA-B6-A409-01 6 90388353 90388353 G T MDN1 Missense_Mutation p.A4126D 0.11 probably_damaging(0.937) TCGA-B6-A409-01 7 103801544 103801544 A G ORC5 Silent p.A375A 0.27 TCGA-B6-A409-01 7 128495365 128495365 C T FLNC Silent p.L2416L 0.20 TCGA-B6-A409-01 7 1529249 1529249 G A INTS1 Silent p.A745A 0.35 TCGA-B6-A409-01 7 98792809 98792809 G A KPNA7 Missense_Mutation p.S146L 0.36 deleterious(0) probably_damaging(1) TCGA-B6-A409-01 9 101913956 101913956 G A TGFBR1 3'UTR 0.24 TCGA-B6-A409-01 9 85881994 85881994 G C FRMD3 Intron 0.18 TCGA-B6-A409-01 X 130409566 130409566 G T IGSF1 Missense_Mutation p.P1029T 0.31 tolerated(0.39) benign(0.272) TCGA-B6-A409-01 X 149100974 149100974 T A CXorf40B Missense_Mutation p.I89F 0.24 deleterious(0) possibly_damaging(0.448) TCGA-B6-A409-01 X 152959716 152959716 G A SLC6A8 Silent p.V462V 0.09 TCGA-B6-A409-01 X 39937175 39937175 G C BCOR Nonsense_Mutation p.S3* 0.38 TCGA-B6-A409-01 X 62894024 62894024 G A ARHGEF9 Missense_Mutation p.A273V 0.41 deleterious(0) probably_damaging(1) TCGA-B6-A409-01 X 70362162 70362162 G T MED12 3'UTR 0.27 TCGA-B6-A40B-01 10 121431832 121431832 C T BAG3 Silent p.S191S 0.34 TCGA-B6-A40B-01 11 18051082 18051082 C T TPH1 Silent p.A149A 0.38 TCGA-B6-A40B-01 11 43877278 43877278 G T HSD17B12 3'UTR 0.47 TCGA-B6-A40B-01 11 57373931 57373931 C T SERPING1 Missense_Mutation p.H314Y 0.38 tolerated(1) benign(0.001) TCGA-B6-A40B-01 12 1009694 1009694 C T WNK1 Silent p.L2167L 0.21 TCGA-B6-A40B-01 12 14839128 14839128 C A GUCY2C Missense_Mutation p.G121V 0.28 deleterious(0) probably_damaging(1) TCGA-B6-A40B-01 12 96421311 96421311 C T LTA4H Missense_Mutation p.E108K 0.35 tolerated(0.1) benign(0.05) TCGA-B6-A40B-01 13 20244477 20244477 G A MPHOSPH8 Missense_Mutation p.D811N 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-B6-A40B-01 13 50235136 50235136 T C EBPL Missense_Mutation p.K197E 0.19 tolerated(0.35) benign(0.044) TCGA-B6-A40B-01 14 20444046 20444046 C T OR4K15 Silent p.A123A 0.35 TCGA-B6-A40B-01 15 83935703 83935703 C T BNC1 Missense_Mutation p.R107H 0.27 deleterious(0) possibly_damaging(0.863) TCGA-B6-A40B-01 15 91424679 91424679 G C FURIN Missense_Mutation p.Q652H 0.28 tolerated(0.42) benign(0.069) TCGA-B6-A40B-01 16 2652922 2652926 TTGAA - PDPK1 3'UTR 0.31 TCGA-B6-A40B-01 16 29118876 29118876 C T CTB-134H23.3 RNA 0.30 TCGA-B6-A40B-01 16 3021843 3021843 C T PAQR4 Missense_Mutation p.S239F 0.19 deleterious(0) probably_damaging(1) TCGA-B6-A40B-01 16 68849577 68849577 G T CDH1 Nonsense_Mutation p.E494* 0.41 TCGA-B6-A40B-01 17 27949760 27949760 C T CORO6 5'UTR 0.29 TCGA-B6-A40B-01 17 3336292 3336292 C A OR1E2 Missense_Mutation p.V282F 0.25 deleterious(0) benign(0.213) TCGA-B6-A40B-01 17 75494634 75494634 C T SEPT9 Missense_Mutation p.T552I 0.24 deleterious(0) probably_damaging(0.999) TCGA-B6-A40B-01 17 78441200 78441200 A G NPTX1 3'UTR 0.36 TCGA-B6-A40B-01 17 79414864 79414864 G A RP11-1055B8.7 Silent p.R1322R 0.26 TCGA-B6-A40B-01 18 29171811 29171811 A T TTR 5'UTR 0.18 TCGA-B6-A40B-01 19 3179502 3179502 C T S1PR4 Missense_Mutation p.P238S 0.27 tolerated(0.88) benign(0.011) TCGA-B6-A40B-01 19 36558244 36558244 A G WDR62 Missense_Mutation p.R200G 0.14 deleterious(0) possibly_damaging(0.465) TCGA-B6-A40B-01 19 41822480 41822480 C G CCDC97 Missense_Mutation p.Q80E 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-B6-A40B-01 19 56005180 56005180 C T SSC5D Missense_Mutation p.R372W 0.43 probably_damaging(0.997) TCGA-B6-A40B-01 1 120301760 120301760 G T HMGCS2 Silent p.I277I 0.44 TCGA-B6-A40B-01 1 162767619 162767619 T C HSD17B7 Silent p.A120A 0.39 TCGA-B6-A40B-01 1 23966218 23966218 C T MDS2 Silent p.G65G 0.49 TCGA-B6-A40B-01 1 57411587 57411587 G A C8B Missense_Mutation p.R338C 0.10 deleterious(0) probably_damaging(0.944) TCGA-B6-A40B-01 20 30954253 30954253 G A ASXL1 Missense_Mutation p.G42R 0.33 deleterious(0.03) probably_damaging(0.987) TCGA-B6-A40B-01 20 45192149 45192149 C T SLC13A3 Silent p.P512P 0.32 TCGA-B6-A40B-01 21 44835564 44835564 T C SIK1 3'UTR 0.20 TCGA-B6-A40B-01 2 111744695 111744695 G A ACOXL Missense_Mutation p.R357Q 0.22 tolerated(0.24) benign(0.058) TCGA-B6-A40B-01 2 166246184 166246184 G A SCN2A Silent p.E1956E 0.33 TCGA-B6-A40B-01 2 176973997 176973997 C T HOXD11 3'UTR 0.31 TCGA-B6-A40B-01 2 211521327 211521327 C A CPS1 Missense_Mutation p.Q1219K 0.24 deleterious(0) benign(0.248) TCGA-B6-A40B-01 2 219137515 219137527 CTGTTAAGTCCTC - PNKD Intron 0.35 TCGA-B6-A40B-01 2 24303884 24303884 C G TP53I3 Missense_Mutation p.D142H 0.23 deleterious(0.05) benign(0.018) TCGA-B6-A40B-01 3 126291197 126291197 C T TXNRD3NB Missense_Mutation p.E64K 0.15 possibly_damaging(0.486) TCGA-B6-A40B-01 3 139062975 139062975 T C MRPS22 Missense_Mutation p.L36P 0.28 deleterious_low_confidence(0.03) benign(0.01) TCGA-B6-A40B-01 3 142432104 142432104 T A PLS1 3'UTR 0.20 TCGA-B6-A40B-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.43 deleterious(0.04) probably_damaging(0.96) TCGA-B6-A40B-01 3 31871637 31871637 G A OSBPL10 Silent p.L208L 0.28 TCGA-B6-A40B-01 3 3888617 3888617 A G LRRN1 3'UTR 0.26 TCGA-B6-A40B-01 3 50380800 50380800 C T ZMYND10 Missense_Mutation p.A150T 0.21 deleterious(0.01) benign(0.061) TCGA-B6-A40B-01 4 114209638 114209638 C A ANK2 Missense_Mutation p.T758N 0.30 probably_damaging(1) TCGA-B6-A40B-01 5 123983690 123983690 C A ZNF608 Missense_Mutation p.G796V 0.23 tolerated(0.15) probably_damaging(1) TCGA-B6-A40B-01 5 132159145 132159145 C T SHROOM1 Missense_Mutation p.E675K 0.21 tolerated(0.69) benign(0.003) TCGA-B6-A40B-01 5 33964088 33964088 G C SLC45A2 Missense_Mutation p.A199G 0.16 tolerated(1) benign(0.235) TCGA-B6-A40B-01 5 65342343 65342343 G A ERBB2IP Missense_Mutation p.V589I 0.49 tolerated(0.23) benign(0.004) TCGA-B6-A40B-01 5 94784045 94784045 C G FAM81B Missense_Mutation p.Q368E 0.29 tolerated(0.21) benign(0.019) TCGA-B6-A40B-01 6 136693636 136693636 C G MAP7 Intron 0.38 TCGA-B6-A40B-01 6 159653589 159653589 G A FNDC1 Missense_Mutation p.R682H 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-B6-A40B-01 6 42146547 42146547 G A GUCA1A Missense_Mutation p.R120H 0.26 tolerated(0.06) possibly_damaging(0.857) TCGA-B6-A40B-01 6 74072976 74072976 C G KHDC3L Missense_Mutation p.H110D 0.29 deleterious(0.03) probably_damaging(0.966) TCGA-B6-A40B-01 7 128496900 128496900 G A FLNC Missense_Mutation p.V2496I 0.41 tolerated(0.14) probably_damaging(0.984) TCGA-B6-A40B-01 8 121259909 121259909 G T COL14A1 Missense_Mutation p.R846L 0.26 deleterious(0.04) probably_damaging(1) TCGA-B6-A40B-01 8 41812875 41812875 C T KAT6A Missense_Mutation p.E513K 0.10 possibly_damaging(0.508) TCGA-B6-A40B-01 9 101912800 101912800 G A TGFBR1 3'UTR 0.22 TCGA-B6-A40B-01 9 141014762 141014762 G T CACNA1B Missense_Mutation p.R2059L 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-B6-A40B-01 9 73424899 73424899 T A TRPM3 Intron 0.22 TCGA-B6-A40B-01 X 10535364 10535364 C T MID1 Missense_Mutation p.R75H 0.31 deleterious(0) probably_damaging(0.999) TCGA-B6-A40B-01 X 118723826 118723826 T A NKRF Missense_Mutation p.N536I 0.22 deleterious(0) probably_damaging(0.992) TCGA-B6-A40B-01 X 146331732 146331732 G C MIR514B RNA 0.27 TCGA-B6-A40B-01 X 149100569 149100569 G C CXorf40B 3'UTR 0.27 TCGA-B6-A40B-01 X 153678580 153678580 G A FAM50A Silent p.L308L 0.38 TCGA-B6-A40B-01 X 70389455 70389455 G T NLGN3 Silent p.G685G 0.33 TCGA-B6-A40C-01 10 8111500 8111500 G A GATA3 Missense_Mutation p.R330K 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-B6-A40C-01 11 113281208 113281208 C T DRD2 3'UTR 0.38 TCGA-B6-A40C-01 11 55595104 55595104 C A OR5L2 Missense_Mutation p.S137Y 0.36 deleterious(0) possibly_damaging(0.907) TCGA-B6-A40C-01 11 60617866 60617866 C T CCDC86 3'UTR 0.42 TCGA-B6-A40C-01 12 57660607 57660607 C A R3HDM2 Missense_Mutation p.V666L 0.28 tolerated(0.09) probably_damaging(0.992) TCGA-B6-A40C-01 12 80168379 80168379 G A PPP1R12A 3'UTR 0.38 TCGA-B6-A40C-01 13 23915403 23915403 G A SACS Missense_Mutation p.P871L 0.34 probably_damaging(0.998) TCGA-B6-A40C-01 13 50586375 50586375 A G TRIM13 Missense_Mutation p.Q103R 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-B6-A40C-01 14 86089128 86089128 C T FLRT2 Missense_Mutation p.R424W 0.30 deleterious(0.02) benign(0.005) TCGA-B6-A40C-01 16 20043437 20043437 C T GPR139 Missense_Mutation p.A228T 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-B6-A40C-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.51 TCGA-B6-A40C-01 16 81744057 81744057 G T CMIP 3'UTR 0.29 TCGA-B6-A40C-01 17 26898242 26898242 C T PIGS Intron 0.46 TCGA-B6-A40C-01 17 39740115 39740115 G A KRT14 Missense_Mutation p.A275V 0.26 deleterious(0.02) possibly_damaging(0.654) TCGA-B6-A40C-01 17 46622246 46622247 - A HOXB2 Frame_Shift_Ins p.G10Wfs*156 0.27 TCGA-B6-A40C-01 17 4693130 4693130 C T GLTPD2 Missense_Mutation p.R139W 0.34 tolerated(0.18) probably_damaging(0.939) TCGA-B6-A40C-01 18 19109780 19109780 T A ESCO1 3'UTR 0.29 TCGA-B6-A40C-01 18 44146271 44146271 C T LOXHD1 Missense_Mutation p.G796R 0.14 tolerated(0.19) possibly_damaging(0.759) TCGA-B6-A40C-01 18 57567684 57567684 C T PMAIP1 Intron 0.41 TCGA-B6-A40C-01 18 77624283 77624283 G A KCNG2 Missense_Mutation p.E206K 0.36 deleterious(0.01) benign(0.182) TCGA-B6-A40C-01 18 77894253 77894253 C A ADNP2 Silent p.L319L 0.36 TCGA-B6-A40C-01 19 49952762 49952762 G C PIH1D1 Missense_Mutation p.L103V 0.40 deleterious(0.01) possibly_damaging(0.888) TCGA-B6-A40C-01 19 6501314 6501314 C T TUBB4A Silent p.P87P 0.35 TCGA-B6-A40C-01 1 158585119 158585119 G A SPTA1 Silent p.D2225D 0.15 TCGA-B6-A40C-01 1 168056825 168056825 T C GPR161 Missense_Mutation p.K461R 0.18 tolerated_low_confidence(0.26) benign(0.007) TCGA-B6-A40C-01 1 209800885 209800885 G A LAMB3 Missense_Mutation p.P443L 0.41 deleterious(0.04) benign(0.274) TCGA-B6-A40C-01 1 226475491 226475491 G C LIN9 Missense_Mutation p.T107R 0.49 tolerated(0.49) benign(0.013) TCGA-B6-A40C-01 1 236157061 236157061 G T NID1 Missense_Mutation p.A880E 0.51 tolerated(1) benign(0.001) TCGA-B6-A40C-01 1 240975339 240975339 C A RGS7 Nonsense_Mutation p.E321* 0.21 TCGA-B6-A40C-01 21 38103360 38103360 C T SIM2 Missense_Mutation p.T253M 0.09 tolerated(0.26) possibly_damaging(0.68) TCGA-B6-A40C-01 21 38569977 38569977 G A TTC3 Missense_Mutation p.D1896N 0.25 deleterious(0.02) possibly_damaging(0.821) TCGA-B6-A40C-01 2 127816647 127816647 G A BIN1 Silent p.H314H 0.22 TCGA-B6-A40C-01 2 191334488 191334488 C T MFSD6 Silent p.L513L 0.27 TCGA-B6-A40C-01 2 219894723 219894723 C A CCDC108 Missense_Mutation p.V457F 0.07 deleterious(0) probably_damaging(0.92) TCGA-B6-A40C-01 2 39187203 39187203 A T ARHGEF33 Missense_Mutation p.E586V 0.21 deleterious(0.04) benign(0.116) TCGA-B6-A40C-01 2 40657293 40657293 C T SLC8A1 Missense_Mutation p.G43E 0.23 tolerated(0.26) benign(0.032) TCGA-B6-A40C-01 3 196669930 196669930 G T PIGZ 3'Flank 0.11 TCGA-B6-A40C-01 3 33552254 33552254 C T CLASP2 Silent p.V1379V 0.37 TCGA-B6-A40C-01 3 42299700 42299700 C T CCK Missense_Mutation p.V80I 0.37 tolerated(1) benign(0.006) TCGA-B6-A40C-01 4 186544315 186544315 C T SORBS2 Silent p.P852P 0.47 TCGA-B6-A40C-01 4 85645723 85645723 C T WDFY3 Missense_Mutation p.V2433I 0.30 tolerated(1) benign(0) TCGA-B6-A40C-01 5 153855122 153855122 G C HAND1 3'UTR 0.43 TCGA-B6-A40C-01 5 179302039 179302039 G A TBC1D9B Silent p.S683S 0.32 TCGA-B6-A40C-01 5 180374624 180374624 G T BTNL8 Missense_Mutation p.Q262H 0.28 tolerated(0.07) possibly_damaging(0.453) TCGA-B6-A40C-01 5 96460224 96460224 A G LIX1 Silent p.P64P 0.41 TCGA-B6-A40C-01 6 21065365 21065365 T C CDKAL1 Missense_Mutation p.V381A 0.23 deleterious(0) probably_damaging(0.91) TCGA-B6-A40C-01 6 47594772 47594772 G C CD2AP 3'UTR 0.20 TCGA-B6-A40C-01 7 100677258 100677258 G A MUC17 Missense_Mutation p.S854N 0.29 unknown(0) TCGA-B6-A40C-01 7 1098703 1098703 C G GPR146 3'UTR 0.39 TCGA-B6-A40C-01 7 157959966 157959966 G A PTPRN2 Silent p.S189S 0.06 TCGA-B6-A40C-01 8 142199030 142199030 A G DENND3 Intron 0.33 TCGA-B6-A40C-01 8 30703515 30703516 - T TEX15 Frame_Shift_Ins p.A1007Sfs*3 0.42 TCGA-B6-A40C-01 8 79609657 79609657 C A ZC2HC1A Missense_Mutation p.L174I 0.23 tolerated(0.49) benign(0.009) TCGA-B6-A40C-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.25 TCGA-B6-A40C-01 X 136113330 136113330 G A GPR101 Silent p.Y168Y 0.35 TCGA-B6-A40C-01 X 142717848 142717848 C T SLITRK4 Silent p.V359V 0.12 TCGA-B6-A40C-01 X 30327413 30327413 G A NR0B1 Missense_Mutation p.T23M 0.24 tolerated_low_confidence(0.15) benign(0.006) TCGA-BH-A0AU-01 11 118468587 118468587 A G ARCN1 Silent p.Q469Q 0.51 TCGA-BH-A0AU-01 11 71724980 71724980 C T NUMA1 Missense_Mutation p.R1190Q 0.18 probably_damaging(0.999) TCGA-BH-A0AU-01 12 107141268 107141268 G T RFX4 Missense_Mutation p.G572W 0.33 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-BH-A0AU-01 12 56817648 56817648 G A TIMELESS Silent p.G633G 0.33 TCGA-BH-A0AU-01 17 30678929 30678929 C T ZNF207 Nonsense_Mutation p.Q56* 0.29 TCGA-BH-A0AU-01 17 61570872 61570872 C T ACE Silent p.F996F 0.28 TCGA-BH-A0AU-01 17 73745040 73745040 G A ITGB4 Missense_Mutation p.R1077H 0.30 deleterious(0.01) benign(0.117) TCGA-BH-A0AU-01 19 1032430 1032430 C G CNN2 Missense_Mutation p.I75M 0.32 deleterious(0) probably_damaging(0.921) TCGA-BH-A0AU-01 19 40729202 40729202 T A CNTD2 Missense_Mutation p.L227F 0.47 tolerated(0.15) possibly_damaging(0.889) TCGA-BH-A0AU-01 19 55707939 55707939 G A PTPRH Silent p.D736D 0.21 TCGA-BH-A0AU-01 19 7573145 7573149 ACAAT - C19orf45 Frame_Shift_Del p.Y451Gfs*? 0.52 TCGA-BH-A0AU-01 1 112270149 112270149 C A FAM212B Missense_Mutation p.C112F 0.17 tolerated(0.7) benign(0.14) TCGA-BH-A0AU-01 1 150807078 150807078 C A ARNT Nonsense_Mutation p.E247* 0.11 TCGA-BH-A0AU-01 22 18300541 18300541 G A MICAL3 Missense_Mutation p.A1629V 0.80 benign(0.054) TCGA-BH-A0AU-01 2 101097609 101097609 C T NMS Nonsense_Mutation p.R132* 0.21 TCGA-BH-A0AU-01 2 210557446 210557446 G T MAP2 Missense_Mutation p.K184N 0.35 tolerated_low_confidence(0.05) benign(0.005) TCGA-BH-A0AU-01 3 129207207 129207207 G A IFT122 Silent p.A704A 0.18 TCGA-BH-A0AU-01 3 13545616 13545616 G T HDAC11 Missense_Mutation p.E224D 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-BH-A0AU-01 4 174219320 174219321 - ATACCCC GALNT7 Frame_Shift_Ins p.Q343Hfs*7 0.18 TCGA-BH-A0AU-01 4 187540662 187540662 C A FAT1 Missense_Mutation p.V2360L 0.28 benign(0.261) TCGA-BH-A0AU-01 4 78082828 78082828 C G CCNG2 Silent p.L211L 0.25 TCGA-BH-A0AU-01 5 140188734 140188734 C T PCDHA4 Silent p.H654H 0.42 TCGA-BH-A0AU-01 9 135798857 135798857 A T TSC1 Missense_Mutation p.L129H 0.48 deleterious(0.03) possibly_damaging(0.737) TCGA-BH-A0AU-01 9 32630247 32630247 C T TAF1L Silent p.G1777G 0.06 TCGA-BH-A0AU-01 X 12736089 12736089 A T FRMPD4 Missense_Mutation p.K1048N 0.24 deleterious_low_confidence(0.02) benign(0.005) TCGA-BH-A0AV-01 10 128114412 128114412 G T C10orf90 3'UTR 0.06 TCGA-BH-A0AV-01 10 50085160 50085160 A T WDFY4 Missense_Mutation p.L2361F 0.05 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AV-01 10 73553149 73553149 C T CDH23 5'Flank 0.46 TCGA-BH-A0AV-01 11 6592506 6592506 C T DNHD1 Silent p.H4588H 0.29 TCGA-BH-A0AV-01 11 9607061 9607061 A C WEE1 Missense_Mutation p.E486A 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 12 13526168 13526168 T G C12orf36 Missense_Mutation p.Q129H 0.27 benign(0.387) TCGA-BH-A0AV-01 12 21036408 21036408 A G SLCO1B3 Silent p.S518S 0.15 TCGA-BH-A0AV-01 12 71054738 71054738 G T PTPRR Missense_Mutation p.P583H 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 12 8998791 8998791 C T A2ML1 Silent p.F552F 0.29 TCGA-BH-A0AV-01 12 9312950 9312950 C T PZP Silent p.T1003T 0.45 TCGA-BH-A0AV-01 13 33109915 33109915 G A N4BP2L2 Intron 0.47 TCGA-BH-A0AV-01 13 52598472 52598472 C G ALG11 Missense_Mutation p.I202M 0.44 deleterious(0) probably_damaging(0.98) TCGA-BH-A0AV-01 13 52701581 52701581 C A NEK5 Missense_Mutation p.G13V 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 13 79189774 79189774 T C RNF219 Missense_Mutation p.K708E 0.04 deleterious(0) probably_damaging(0.99) TCGA-BH-A0AV-01 14 42373418 42373418 A T LRFN5 3'UTR 0.39 TCGA-BH-A0AV-01 15 42058547 42058547 A G MGA Missense_Mutation p.Y2756C 0.42 tolerated(0.16) benign(0.005) TCGA-BH-A0AV-01 15 44134845 44134845 A C WDR76 Missense_Mutation p.E285A 0.30 tolerated(0.17) benign(0.003) TCGA-BH-A0AV-01 15 44905735 44905735 C A SPG11 Splice_Site p.X1013_splice 0.13 TCGA-BH-A0AV-01 15 80454634 80454634 C G FAH Silent p.V137V 0.17 TCGA-BH-A0AV-01 16 2222552 2222552 C A TRAF7 Missense_Mutation p.A249D 0.50 tolerated(0.65) benign(0.018) TCGA-BH-A0AV-01 16 28845927 28845927 G C ATXN2L Silent p.T782T 0.11 TCGA-BH-A0AV-01 16 57092940 57092943 CCTC TGTACCTG NLRC5 Frame_Shift_Ins p.P1296Lfs*17 0.45 TCGA-BH-A0AV-01 17 27241030 27241030 T C PHF12 Missense_Mutation p.Y387C 0.06 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 17 42978466 42978466 T A CCDC103 Missense_Mutation p.L34I 0.33 tolerated(0.12) possibly_damaging(0.452) TCGA-BH-A0AV-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 17 79864664 79864664 G C PCYT2 Missense_Mutation p.I234M 0.20 deleterious(0) possibly_damaging(0.875) TCGA-BH-A0AV-01 19 1063775 1063775 G T ABCA7 Missense_Mutation p.G1955V 0.61 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 19 46973872 46973872 G A PNMAL1 Nonsense_Mutation p.Q141* 0.25 TCGA-BH-A0AV-01 19 50474928 50474928 T G SIGLEC16 RNA 0.29 TCGA-BH-A0AV-01 19 51021954 51021954 C A LRRC4B Missense_Mutation p.R339L 0.32 deleterious(0.01) benign(0.18) TCGA-BH-A0AV-01 19 51841274 51841274 C A VSIG10L Missense_Mutation p.G640C 0.35 deleterious(0.04) possibly_damaging(0.871) TCGA-BH-A0AV-01 19 53014843 53014843 A C ZNF578 Missense_Mutation p.E403D 0.27 tolerated(0.11) benign(0.072) TCGA-BH-A0AV-01 19 58371617 58371617 G C ZNF587 3'UTR 0.34 TCGA-BH-A0AV-01 19 58790466 58790466 G A ZNF8 Missense_Mutation p.G7R 0.12 tolerated(0.1) benign(0.012) TCGA-BH-A0AV-01 1 151403234 151403234 G C POGZ Missense_Mutation p.Q123E 0.14 tolerated(0.17) benign(0.146) TCGA-BH-A0AV-01 1 153005031 153005031 T G SPRR1B Silent p.P70P 0.05 TCGA-BH-A0AV-01 1 160723016 160723016 G C SLAMF7 3'UTR 0.23 TCGA-BH-A0AV-01 1 16475071 16475071 C T EPHA2 Missense_Mutation p.A209T 0.30 deleterious(0) possibly_damaging(0.766) TCGA-BH-A0AV-01 1 203040821 203040821 C T PPFIA4 Missense_Mutation p.A603V 0.29 deleterious(0.01) possibly_damaging(0.454) TCGA-BH-A0AV-01 1 247201519 247201519 C G ZNF670 Missense_Mutation p.E134D 0.15 deleterious(0.01) benign(0.069) TCGA-BH-A0AV-01 1 41978910 41978910 G C HIVEP3 Silent p.P1994P 0.45 TCGA-BH-A0AV-01 1 43815037 43815037 C T MPL Intron 0.26 TCGA-BH-A0AV-01 1 46738454 46738454 C T RAD54L Missense_Mutation p.S452L 0.08 tolerated(1) benign(0.048) TCGA-BH-A0AV-01 1 74507371 74507371 A C LRRIQ3 Missense_Mutation p.M415R 0.28 deleterious(0) possibly_damaging(0.543) TCGA-BH-A0AV-01 20 40709466 40709466 G A PTPRT 3'UTR 0.07 TCGA-BH-A0AV-01 20 61942976 61942976 G A COL20A1 Splice_Site p.X514_splice 0.43 TCGA-BH-A0AV-01 22 29115457 29115457 A C CHEK2 Missense_Mutation p.D246E 0.20 tolerated(0.06) possibly_damaging(0.873) TCGA-BH-A0AV-01 22 38962600 38962611 GTTTGTTCGCTG - DMC1 In_Frame_Del p.A76_L80delinsV 0.20 TCGA-BH-A0AV-01 2 145157550 145157550 C G ZEB2 Missense_Mutation p.V402L 0.26 tolerated(0.39) benign(0.003) TCGA-BH-A0AV-01 2 166020192 166020192 G T SCN3A Silent p.G210G 0.23 TCGA-BH-A0AV-01 2 179407935 179407935 T C TTN Silent p.L32255L 0.09 TCGA-BH-A0AV-01 2 204306664 204306664 A C RAPH1 Intron 0.25 TCGA-BH-A0AV-01 2 42931438 42931438 G A MTA3 Missense_Mutation p.R377K 0.21 tolerated(0.4) benign(0.06) TCGA-BH-A0AV-01 3 100373640 100373640 T A GPR128 Intron 0.17 TCGA-BH-A0AV-01 3 105421211 105421211 A T CBLB Silent p.P562P 0.31 TCGA-BH-A0AV-01 3 125249244 125249244 C G OSBPL11 3'UTR 0.28 TCGA-BH-A0AV-01 3 129251508 129251523 ACCCACCAGGGCTCCA - RHO Frame_Shift_Del p.H278Sfs*6 0.26 TCGA-BH-A0AV-01 3 154889935 154889935 C T MME Silent p.G670G 0.39 TCGA-BH-A0AV-01 3 170244419 170244419 T A SLC7A14 Intron 0.26 TCGA-BH-A0AV-01 3 33135493 33135493 G A TMPPE Silent p.R65R 0.30 TCGA-BH-A0AV-01 3 49227306 49227306 G A C3orf84 Intron 0.14 TCGA-BH-A0AV-01 3 50273779 50273779 C A GNAI2 Silent p.T4T 0.21 TCGA-BH-A0AV-01 4 41015638 41015638 G A APBB2 Missense_Mutation p.S266F 0.27 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AV-01 5 118862855 118862855 G A HSD17B4 Missense_Mutation p.G595R 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 5 9202316 9202316 A C SEMA5A Missense_Mutation p.F228C 0.19 deleterious(0) possibly_damaging(0.89) TCGA-BH-A0AV-01 6 112430498 112430498 G C LAMA4 3'UTR 0.24 TCGA-BH-A0AV-01 6 133421215 133421215 A T LINC00326 RNA 0.29 TCGA-BH-A0AV-01 6 160874545 160874545 A G SLC22A3 3'Flank 0.03 TCGA-BH-A0AV-01 6 168439275 168439275 C G KIF25 Silent p.V120V 0.62 TCGA-BH-A0AV-01 6 25862627 25862627 T C SLC17A3 Missense_Mutation p.H46R 0.22 deleterious(0) probably_damaging(0.958) TCGA-BH-A0AV-01 6 30623036 30623036 A G DHX16 Silent p.D913D 0.23 TCGA-BH-A0AV-01 6 33282945 33282945 C - ZBTB22 Frame_Shift_Del p.P584Hfs*129 0.30 TCGA-BH-A0AV-01 6 42891993 42891993 C T PTCRA Missense_Mutation p.P136S 0.20 tolerated(0.4) benign(0.362) TCGA-BH-A0AV-01 6 43191035 43191035 C T CUL9 Missense_Mutation p.S2395F 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-BH-A0AV-01 6 44253808 44253808 A T TCTE1 Missense_Mutation p.Y247N 0.19 deleterious(0) probably_damaging(0.986) TCGA-BH-A0AV-01 6 97051596 97051596 T C FHL5 Missense_Mutation p.V36A 0.32 deleterious(0.01) benign(0.008) TCGA-BH-A0AV-01 7 117874794 117874794 C G ANKRD7 Missense_Mutation p.L112V 0.05 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AV-01 7 122153323 122153323 G A CADPS2 Missense_Mutation p.R508C 0.35 deleterious(0) probably_damaging(1) TCGA-BH-A0AV-01 7 12258129 12258129 G C TMEM106B Missense_Mutation p.R88T 0.21 deleterious(0) probably_damaging(0.998) TCGA-BH-A0AV-01 7 1525118 1525118 C T INTS1 Intron 0.60 TCGA-BH-A0AV-01 7 21639693 21639693 C G DNAH11 Missense_Mutation p.Q986E 0.28 possibly_damaging(0.467) TCGA-BH-A0AV-01 8 103664118 103664118 G A KLF10 Missense_Mutation p.P148S 0.05 tolerated(0.23) benign(0.354) TCGA-BH-A0AV-01 8 117862998 117863027 CTGCTGAGGCTTAAAGCAATACAAATAAGA - RAD21 Splice_Site p.X491_splice 0.20 TCGA-BH-A0AV-01 8 143856615 143856615 G A LYNX1 Intron 0.31 TCGA-BH-A0AV-01 8 22172647 22172647 G A PIWIL2 Missense_Mutation p.D733N 0.16 tolerated(0.3) benign(0.05) TCGA-BH-A0AV-01 8 82571472 82571472 G A IMPA1 3'Flank 0.20 TCGA-BH-A0AV-01 9 126520095 126520095 T A DENND1A Silent p.T63T 0.36 TCGA-BH-A0AV-01 9 139935634 139935634 C T NPDC1 Missense_Mutation p.G89S 0.24 tolerated(0.82) benign(0.078) TCGA-BH-A0AV-01 9 32987552 32987552 G C APTX Missense_Mutation p.P158R 0.24 tolerated(0.51) benign(0.058) TCGA-BH-A0AV-01 9 35664117 35664117 G A ARHGEF39 Silent p.L121L 0.20 TCGA-BH-A0AV-01 9 79955388 79955388 G C VPS13A Missense_Mutation p.M2316I 0.27 tolerated(0.26) benign(0.042) TCGA-BH-A0AV-01 X 117033310 117033310 G C KLHL13 Missense_Mutation p.P513R 0.27 deleterious(0) probably_damaging(0.97) TCGA-BH-A0AY-01 10 75204476 75204476 T A PPP3CB Intron 0.33 TCGA-BH-A0AY-01 11 116692089 116692089 C A APOA4 Missense_Mutation p.D229Y 0.06 deleterious(0) probably_damaging(0.987) TCGA-BH-A0AY-01 11 122850010 122850010 G A BSX Nonsense_Mutation p.R140* 0.24 TCGA-BH-A0AY-01 11 88583171 88583171 G A GRM5 Missense_Mutation p.R272W 0.06 deleterious(0) probably_damaging(0.994) TCGA-BH-A0AY-01 12 11803033 11803033 G T ETV6 5'UTR 0.20 TCGA-BH-A0AY-01 12 121858126 121858126 G A RNF34 Missense_Mutation p.A240T 0.12 tolerated(0.6) benign(0.003) TCGA-BH-A0AY-01 12 126004087 126004087 G T TMEM132B Silent p.P398P 0.10 TCGA-BH-A0AY-01 12 130833872 130833872 C T PIWIL1 Nonsense_Mutation p.R275* 0.13 TCGA-BH-A0AY-01 14 24534221 24534221 T C LRRC16B Silent p.P1045P 0.45 TCGA-BH-A0AY-01 15 23931197 23931197 C A NDN 3'UTR 0.62 TCGA-BH-A0AY-01 15 37184562 37184562 G A MEIS2 Missense_Mutation p.P416S 0.17 tolerated_low_confidence(0.27) benign(0.001) TCGA-BH-A0AY-01 15 41192326 41192326 G A VPS18 Missense_Mutation p.R437H 0.34 deleterious(0.03) benign(0.003) TCGA-BH-A0AY-01 15 67652219 67652219 G A IQCH Missense_Mutation p.R250K 0.13 tolerated(0.79) benign(0.001) TCGA-BH-A0AY-01 15 90784778 90784778 C T GDPGP1 Missense_Mutation p.S213L 0.20 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AY-01 15 99696303 99696303 G A TTC23 Intron 0.15 TCGA-BH-A0AY-01 16 1616239 1616240 TG - IFT140 Frame_Shift_Del p.T608Sfs*5 0.14 TCGA-BH-A0AY-01 16 22291592 22291592 G T EEF2K Nonsense_Mutation p.E655* 0.31 TCGA-BH-A0AY-01 16 3406666 3406666 C T OR2C1 Silent p.L242L 0.05 TCGA-BH-A0AY-01 17 40010527 40010527 G T KLHL11 Missense_Mutation p.T531N 0.08 deleterious(0.04) benign(0.114) TCGA-BH-A0AY-01 17 48452809 48452809 C T EME1 Silent p.V80V 0.04 TCGA-BH-A0AY-01 17 7644269 7644269 T G DNAH2 Missense_Mutation p.W550G 0.50 possibly_damaging(0.51) TCGA-BH-A0AY-01 19 17014520 17014520 T C CPAMD8 Missense_Mutation p.T1514A 0.09 tolerated(0.19) benign(0.138) TCGA-BH-A0AY-01 19 40331281 40331281 C T FBL Missense_Mutation p.G53S 0.08 tolerated(0.17) unknown(0) TCGA-BH-A0AY-01 1 144904729 144904729 C T PDE4DIP Silent p.L861L 0.23 TCGA-BH-A0AY-01 1 151261880 151261881 AC - ZNF687 Frame_Shift_Del p.T834Sfs*25 0.09 TCGA-BH-A0AY-01 1 153745150 153745150 C T INTS3 Missense_Mutation p.H953Y 0.07 tolerated(0.93) possibly_damaging(0.736) TCGA-BH-A0AY-01 1 231344841 231344841 C T TRIM67 Silent p.H656H 0.08 TCGA-BH-A0AY-01 1 231351163 231351163 C T TRIM67 Missense_Mutation p.R777W 0.16 deleterious_low_confidence(0) possibly_damaging(0.545) TCGA-BH-A0AY-01 1 26885381 26885381 G A RPS6KA1 Missense_Mutation p.D399N 0.33 tolerated(0.34) benign(0.01) TCGA-BH-A0AY-01 1 27269432 27269432 A G NUDC Missense_Mutation p.H206R 0.67 tolerated(0.3) benign(0.007) TCGA-BH-A0AY-01 1 85718266 85718266 A T C1orf52 3'UTR 0.17 TCGA-BH-A0AY-01 2 234959496 234959496 G T SPP2 Missense_Mutation p.M22I 0.33 tolerated(0.32) benign(0.008) TCGA-BH-A0AY-01 2 29293783 29293783 C T C2orf71 Silent p.V1115V 0.36 TCGA-BH-A0AY-01 3 124393524 124393524 C T KALRN 3'UTR 0.17 TCGA-BH-A0AY-01 3 58253048 58253048 G C ABHD6 Missense_Mutation p.K84N 0.14 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AY-01 5 140616050 140616050 G T PCDHB18 RNA 0.42 TCGA-BH-A0AY-01 5 153149914 153149914 G A GRIA1 Missense_Mutation p.V747M 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A0AY-01 5 32088295 32088295 C T PDZD2 Missense_Mutation p.R1581C 0.14 tolerated(0.2) benign(0.007) TCGA-BH-A0AY-01 5 38952353 38952353 C T RICTOR Silent p.L1024L 0.07 TCGA-BH-A0AY-01 5 56161162 56161179 TTTAGAACTGCAGCTGTG - MAP3K1 Splice_Site p.X346_splice 0.11 TCGA-BH-A0AY-01 6 154481152 154481152 C G IPCEF1 Missense_Mutation p.M376I 0.15 tolerated(0.71) benign(0.135) TCGA-BH-A0AY-01 7 44924384 44924384 C A PURB Missense_Mutation p.K188N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A0AY-01 7 72925144 72925144 A T BAZ1B Missense_Mutation p.I49N 0.18 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AY-01 8 144130709 144130709 C T C8orf31 3'UTR 0.28 TCGA-BH-A0AY-01 9 37777821 37777821 G A TRMT10B 3'UTR 0.16 TCGA-BH-A0AY-01 9 8341726 8341726 T G PTPRD Silent p.G1638G 0.20 TCGA-BH-A0AY-01 9 8341727 8341727 C G PTPRD Missense_Mutation p.G1638A 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-BH-A0AY-01 X 65819449 65819449 C T EDA2R Silent p.L278L 0.28 TCGA-BH-A0AY-01 X 70767782 70767782 C T OGT Missense_Mutation p.T186M 0.39 tolerated(0.11) probably_damaging(0.998) TCGA-BH-A0AZ-01 10 101611492 101611492 G A ABCC2 3'UTR 0.41 TCGA-BH-A0AZ-01 10 16893319 16893322 ACAG - CUBN Frame_Shift_Del p.P3192Qfs*4 0.22 TCGA-BH-A0AZ-01 10 70182124 70182144 TTGTCTGATCCACACTCCAGC - DNA2 In_Frame_Del p.L932_K938del 0.22 TCGA-BH-A0AZ-01 10 8115982 8115983 - T GATA3 Frame_Shift_Ins p.*445L 0.21 TCGA-BH-A0AZ-01 11 55872586 55872586 A G OR8H2 Missense_Mutation p.E23G 0.22 deleterious(0.04) benign(0.011) TCGA-BH-A0AZ-01 11 62435234 62435234 G T METTL12 3'UTR 0.23 TCGA-BH-A0AZ-01 11 64082382 64082382 A T ESRRA Silent p.P247P 0.22 TCGA-BH-A0AZ-01 12 120151420 120151420 G T CIT Missense_Mutation p.T1447K 0.17 tolerated(0.16) benign(0.061) TCGA-BH-A0AZ-01 12 122617979 122617979 C G MLXIP Missense_Mutation p.H393D 0.29 tolerated(0.71) benign(0.012) TCGA-BH-A0AZ-01 12 31256888 31256888 G A DDX11 Missense_Mutation p.R945K 0.29 tolerated_low_confidence(1) benign(0) TCGA-BH-A0AZ-01 12 59283825 59283825 G C LRIG3 Missense_Mutation p.I204M 0.26 deleterious(0.03) benign(0.37) TCGA-BH-A0AZ-01 13 31543174 31543174 T C TEX26 Missense_Mutation p.S267P 0.33 tolerated(0.33) benign(0.323) TCGA-BH-A0AZ-01 14 21862192 21862192 G T CHD8 Missense_Mutation p.P1921H 0.12 deleterious(0) probably_damaging(0.998) TCGA-BH-A0AZ-01 14 24538364 24538364 G A LRRC16B Missense_Mutation p.R1334Q 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-BH-A0AZ-01 15 64017562 64017562 T A HERC1 Missense_Mutation p.E1166V 0.21 benign(0.043) TCGA-BH-A0AZ-01 15 73615136 73615136 T G HCN4 Missense_Mutation p.T1100P 0.38 tolerated_low_confidence(0.05) probably_damaging(0.979) TCGA-BH-A0AZ-01 16 15737125 15737125 G C NDE1 5'UTR 0.14 TCGA-BH-A0AZ-01 17 19700727 19700727 G A ULK2 Silent p.I597I 0.23 TCGA-BH-A0AZ-01 17 43037518 43037523 GCGGGT - C1QL1 3'UTR 0.54 TCGA-BH-A0AZ-01 17 45754386 45754386 G C KPNB1 Missense_Mutation p.V666L 0.24 tolerated(0.16) benign(0.359) TCGA-BH-A0AZ-01 17 48668853 48668853 C A CACNA1G Silent p.R837R 0.19 TCGA-BH-A0AZ-01 17 6978532 6978532 C A CLEC10A Missense_Mutation p.K264N 0.38 tolerated(0.17) benign(0.166) TCGA-BH-A0AZ-01 19 12768878 12768878 G C MAN2B1 Silent p.L436L 0.29 TCGA-BH-A0AZ-01 19 12769137 12769137 G C MAN2B1 Missense_Mutation p.F377L 0.22 deleterious(0) possibly_damaging(0.71) TCGA-BH-A0AZ-01 19 12769247 12769247 G A MAN2B1 Silent p.L368L 0.28 TCGA-BH-A0AZ-01 19 13397435 13397435 G C CACNA1A Missense_Mutation p.I1145M 0.05 probably_damaging(0.91) TCGA-BH-A0AZ-01 19 17627089 17627089 G A PGLS Silent p.Q132Q 0.22 TCGA-BH-A0AZ-01 19 42728940 42728940 G A ZNF526 Missense_Mutation p.A129T 0.19 tolerated(0.35) benign(0.355) TCGA-BH-A0AZ-01 19 42753286 42753286 G A ERF Silent p.L326L 0.31 TCGA-BH-A0AZ-01 19 49310293 49310293 C G BCAT2 Silent p.L21L 0.28 TCGA-BH-A0AZ-01 19 9091544 9091544 A G MUC16 Missense_Mutation p.S91P 0.24 unknown(0) TCGA-BH-A0AZ-01 1 11193225 11193225 A C MTOR Missense_Mutation p.L1759R 0.43 tolerated(0.51) benign(0.187) TCGA-BH-A0AZ-01 1 144882723 144882723 T G PDE4DIP Missense_Mutation p.Q1099P 0.11 tolerated(0.17) possibly_damaging(0.892) TCGA-BH-A0AZ-01 1 160064882 160064882 A C IGSF8 Missense_Mutation p.D73E 0.22 tolerated(1) benign(0.002) TCGA-BH-A0AZ-01 1 160111286 160111286 C A ATP1A2 3'UTR 0.07 TCGA-BH-A0AZ-01 1 165398094 165398094 T G RXRG Silent p.P53P 0.20 TCGA-BH-A0AZ-01 1 184681731 184681731 T G EDEM3 Missense_Mutation p.M458L 0.17 deleterious(0.04) possibly_damaging(0.734) TCGA-BH-A0AZ-01 1 203045471 203045471 C T PPFIA4 Missense_Mutation p.H687Y 0.10 tolerated_low_confidence(0.17) benign(0.038) TCGA-BH-A0AZ-01 1 220355687 220355687 A C RAB3GAP2 Missense_Mutation p.F741C 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-BH-A0AZ-01 1 29652166 29652166 C A PTPRU Nonsense_Mutation p.S1445* 0.29 TCGA-BH-A0AZ-01 1 47505115 47505115 C A CYP4X1 Silent p.I328I 0.24 TCGA-BH-A0AZ-01 1 92789908 92789908 C T RPAP2 Silent p.T477T 0.44 TCGA-BH-A0AZ-01 21 43133777 43133777 G T LINC00479 RNA 0.12 TCGA-BH-A0AZ-01 21 43291676 43291676 C - PRDM15 Frame_Shift_Del p.N157Mfs*9 0.29 TCGA-BH-A0AZ-01 22 37387521 37387521 C - TEX33 Splice_Site p.X249_splice 0.22 TCGA-BH-A0AZ-01 22 43227644 43227644 T G ARFGAP3 Splice_Site p.X160_splice 0.31 TCGA-BH-A0AZ-01 2 112566736 112566736 C T ANAPC1 Missense_Mutation p.G1207E 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A0AZ-01 2 152299782 152299782 G A RIF1 Missense_Mutation p.A582T 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A0AZ-01 2 163099886 163099886 G C FAP 5'UTR 0.25 TCGA-BH-A0AZ-01 2 166915079 166915094 TGAATGTACCAAAATC - SCN1A Splice_Site p.X123_splice 0.13 TCGA-BH-A0AZ-01 2 172336674 172336674 A C DCAF17 Missense_Mutation p.S465R 0.22 tolerated(0.3) possibly_damaging(0.881) TCGA-BH-A0AZ-01 3 15065706 15065706 G A NR2C2 Silent p.T282T 0.23 TCGA-BH-A0AZ-01 3 184071138 184071138 G A CLCN2 Missense_Mutation p.A643V 0.32 tolerated(0.09) benign(0.001) TCGA-BH-A0AZ-01 3 196857476 196857476 C A DLG1 Missense_Mutation p.D396Y 0.21 deleterious(0) probably_damaging(0.995) TCGA-BH-A0AZ-01 4 113362126 113362126 C G ALPK1 Missense_Mutation p.H1198D 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A0AZ-01 4 122776652 122776652 C A BBS7 Missense_Mutation p.G198V 0.24 tolerated(0.28) benign(0.371) TCGA-BH-A0AZ-01 4 146560633 146560633 G T MMAA Missense_Mutation p.R114S 0.27 tolerated(0.16) benign(0.155) TCGA-BH-A0AZ-01 4 83795849 83795849 G A SEC31A Missense_Mutation p.A185V 0.20 deleterious(0) probably_damaging(0.991) TCGA-BH-A0AZ-01 5 156899862 156899862 C A NIPAL4 Missense_Mutation p.P432H 0.33 deleterious(0.04) probably_damaging(0.979) TCGA-BH-A0AZ-01 5 57751437 57751452 GTACCCAAAGCCATAT - PLK2 Frame_Shift_Del p.K513Nfs*18 0.27 TCGA-BH-A0AZ-01 5 65372231 65372231 G A ERBB2IP Missense_Mutation p.D1358N 0.23 deleterious(0.02) benign(0.068) TCGA-BH-A0AZ-01 6 111587599 111587599 T G KIAA1919 Missense_Mutation p.F278L 0.23 deleterious(0) possibly_damaging(0.888) TCGA-BH-A0AZ-01 6 148867225 148867225 C T SASH1 Silent p.V1141V 0.26 TCGA-BH-A0AZ-01 6 15374373 15374373 C T JARID2 Missense_Mutation p.S24L 0.23 deleterious(0) probably_damaging(0.991) TCGA-BH-A0AZ-01 6 160500677 160500677 A G IGF2R Silent p.G1848G 0.22 TCGA-BH-A0AZ-01 6 25973465 25973465 G T TRIM38 Missense_Mutation p.V276F 0.27 deleterious(0.02) possibly_damaging(0.56) TCGA-BH-A0AZ-01 6 90647874 90647874 T A BACH2 Missense_Mutation p.I678F 0.05 deleterious(0) probably_damaging(0.989) TCGA-BH-A0AZ-01 7 7646866 7646866 G C MIOS 3'UTR 0.22 TCGA-BH-A0AZ-01 8 48878885 48878885 A T MCM4 Missense_Mutation p.E324V 0.21 deleterious(0) probably_damaging(0.984) TCGA-BH-A0AZ-01 8 70585135 70585135 T C SLCO5A1 Missense_Mutation p.E839G 0.23 deleterious_low_confidence(0.05) benign(0) TCGA-BH-A0AZ-01 9 107331596 107331596 A G OR13C8 Missense_Mutation p.I50V 0.28 tolerated(0.26) benign(0.031) TCGA-BH-A0AZ-01 9 107332384 107332384 T A OR13C8 Nonsense_Mutation p.C312* 0.27 TCGA-BH-A0AZ-01 9 107332385 107332385 A G OR13C8 Missense_Mutation p.R313G 0.27 tolerated(0.06) benign(0.002) TCGA-BH-A0AZ-01 9 90388041 90388041 A G CTSL3P RNA 0.11 TCGA-BH-A0AZ-01 X 101971740 101971764 ATTATCCATCCTCTAGAGTTAGGAC - GPRASP2 Frame_Shift_Del p.N648Kfs*7 0.16 TCGA-BH-A0AZ-01 X 123630873 123630873 C T TENM1 Missense_Mutation p.E1230K 0.29 tolerated(0.14) benign(0.235) TCGA-BH-A0AZ-01 X 135594280 135594280 C T HTATSF1 3'UTR 0.22 TCGA-BH-A0AZ-01 X 140995467 140995467 C T MAGEC1 Silent p.F759F 0.05 TCGA-BH-A0AZ-01 X 64734716 64734716 T A LAS1L Missense_Mutation p.T689S 0.27 tolerated(0.69) benign(0.002) TCGA-BH-A0B0-01 10 96740960 96740960 G A CYP2C9 Missense_Mutation p.E328K 0.22 deleterious(0) benign(0.426) TCGA-BH-A0B0-01 11 105962115 105962115 C G AASDHPPT Missense_Mutation p.L202V 0.22 tolerated(1) benign(0.002) TCGA-BH-A0B0-01 11 64888458 64888458 G A FAU Missense_Mutation p.P91S 0.05 deleterious(0.02) probably_damaging(0.969) TCGA-BH-A0B0-01 11 86119255 86119255 G A CCDC81 Silent p.E352E 0.05 TCGA-BH-A0B0-01 12 120567110 120567110 G C GCN1L1 Silent p.L2620L 0.10 TCGA-BH-A0B0-01 12 120966881 120966881 G A COQ5 Missense_Mutation p.R22W 0.07 tolerated_low_confidence(0.07) benign(0) TCGA-BH-A0B0-01 12 56221997 56221997 G A DNAJC14 Missense_Mutation p.S149F 0.23 deleterious_low_confidence(0) possibly_damaging(0.55) TCGA-BH-A0B0-01 12 6125319 6125319 G T VWF Silent p.V1797V 0.32 TCGA-BH-A0B0-01 12 85449856 85449856 G A LRRIQ1 Missense_Mutation p.E429K 0.25 tolerated(0.15) benign(0.051) TCGA-BH-A0B0-01 14 21955713 21955713 A T TOX4 Missense_Mutation p.D60V 0.25 deleterious(0.02) probably_damaging(0.929) TCGA-BH-A0B0-01 15 38800083 38800083 G A RASGRP1 Silent p.L362L 0.05 TCGA-BH-A0B0-01 15 43621114 43621114 G A LCMT2 Missense_Mutation p.P525L 0.08 deleterious(0.04) benign(0.053) TCGA-BH-A0B0-01 15 79090438 79090438 G A ADAMTS7 Silent p.L158L 0.23 TCGA-BH-A0B0-01 15 79317805 79317805 G A RASGRF1 Nonsense_Mutation p.Q465* 0.32 TCGA-BH-A0B0-01 16 1712794 1712794 G A CRAMP1L Silent p.R876R 0.20 TCGA-BH-A0B0-01 16 21011619 21011619 G C DNAH3 Missense_Mutation p.I2116M 0.04 deleterious(0.01) probably_damaging(0.99) TCGA-BH-A0B0-01 16 2510938 2510938 G A C16orf59 Silent p.L106L 0.18 TCGA-BH-A0B0-01 16 70942723 70942723 C T HYDIN Silent p.Q2682Q 0.07 TCGA-BH-A0B0-01 16 72994089 72994089 C T ZFHX3 5'UTR 0.39 TCGA-BH-A0B0-01 17 40481441 40481441 C T STAT3 Missense_Mutation p.R423Q 0.38 deleterious(0.01) possibly_damaging(0.875) TCGA-BH-A0B0-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.32 tolerated(0.11) benign(0.308) TCGA-BH-A0B0-01 17 8397132 8397132 C A MYH10 Missense_Mutation p.K1376N 0.32 benign(0.424) TCGA-BH-A0B0-01 18 19019479 19019479 C G GREB1L Intron 0.29 TCGA-BH-A0B0-01 18 319881 319881 G A COLEC12 3'UTR 0.20 TCGA-BH-A0B0-01 18 72913839 72913839 G A ZADH2 Silent p.I222I 0.05 TCGA-BH-A0B0-01 19 16601357 16601357 C T CALR3 Missense_Mutation p.R73Q 0.17 deleterious(0) possibly_damaging(0.485) TCGA-BH-A0B0-01 19 17104363 17104363 C G CPAMD8 Missense_Mutation p.E424Q 0.08 tolerated(0.32) benign(0.059) TCGA-BH-A0B0-01 19 46287385 46287385 G C DMWD 3'UTR 0.24 TCGA-BH-A0B0-01 19 53879092 53879092 C T ZNF525 Nonsense_Mutation p.Q29* 0.02 TCGA-BH-A0B0-01 19 9091474 9091474 G C MUC16 Missense_Mutation p.S114C 0.25 unknown(0) TCGA-BH-A0B0-01 1 152080202 152080202 C G TCHH Missense_Mutation p.E1831Q 0.04 benign(0.307) TCGA-BH-A0B0-01 1 152732957 152732957 C T KPRP Missense_Mutation p.P298L 0.08 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B0-01 1 162731157 162731157 C T DDR2 Missense_Mutation p.L338F 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0B0-01 1 168204351 168204351 C T SFT2D2 Silent p.L83L 0.20 TCGA-BH-A0B0-01 1 20945120 20945120 C T CDA 3'UTR 0.27 TCGA-BH-A0B0-01 1 209880330 209880330 C G HSD11B1 Missense_Mutation p.S125C 0.22 tolerated(0.18) possibly_damaging(0.734) TCGA-BH-A0B0-01 1 217688186 217688186 A T GPATCH2 Missense_Mutation p.S382T 0.17 tolerated(0.26) benign(0.222) TCGA-BH-A0B0-01 1 220195850 220195850 C T EPRS Silent p.K318K 0.06 TCGA-BH-A0B0-01 1 36886084 36886084 C T OSCP1 Missense_Mutation p.E318K 0.04 deleterious(0.01) probably_damaging(0.979) TCGA-BH-A0B0-01 1 63788817 63788817 G A FOXD3 Missense_Mutation p.E30K 0.24 deleterious_low_confidence(0) benign(0.305) TCGA-BH-A0B0-01 1 66798256 66798256 G C PDE4B Missense_Mutation p.E234Q 0.03 deleterious(0.02) possibly_damaging(0.691) TCGA-BH-A0B0-01 1 92646629 92646629 G C KIAA1107 Missense_Mutation p.R692T 0.08 tolerated(0.31) benign(0.234) TCGA-BH-A0B0-01 20 1546882 1546882 G C SIRPB1 Silent p.L372L 0.05 TCGA-BH-A0B0-01 20 2636074 2636074 G A NOP56 Missense_Mutation p.E225K 0.22 deleterious(0) possibly_damaging(0.542) TCGA-BH-A0B0-01 20 2736401 2736401 G A EBF4 Missense_Mutation p.A553T 0.34 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BH-A0B0-01 20 32295609 32295609 G A PXMP4 Missense_Mutation p.S181L 0.05 deleterious(0) probably_damaging(0.996) TCGA-BH-A0B0-01 20 36151074 36151074 C T NNAT Silent p.F53F 0.24 TCGA-BH-A0B0-01 20 42935837 42935837 G A FITM2 Silent p.L73L 0.27 TCGA-BH-A0B0-01 20 50230355 50230355 G A ATP9A Missense_Mutation p.S811L 0.05 deleterious(0) possibly_damaging(0.855) TCGA-BH-A0B0-01 21 43838615 43838615 G A UBASH3A Missense_Mutation p.E315K 0.05 deleterious(0.01) benign(0.179) TCGA-BH-A0B0-01 22 17446109 17446109 G C GAB4 Silent p.L446L 0.08 TCGA-BH-A0B0-01 22 33670562 33670562 G A LARGE Missense_Mutation p.H708Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-BH-A0B0-01 2 179482111 179482111 C T TTN Missense_Mutation p.E15901K 0.05 TCGA-BH-A0B0-01 2 219619083 219619083 A T TTLL4 Missense_Mutation p.S1191C 0.38 deleterious_low_confidence(0.03) benign(0.436) TCGA-BH-A0B0-01 2 242168731 242168731 G A HDLBP 3'UTR 0.25 TCGA-BH-A0B0-01 2 44174888 44174888 C G LRPPRC Missense_Mutation p.K649N 0.26 tolerated(0.15) benign(0.091) TCGA-BH-A0B0-01 2 80530457 80530457 A T LRRTM1 Missense_Mutation p.L163H 0.06 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B0-01 2 86769398 86769398 C T RNF103-CHMP3 Missense_Mutation p.R57K 0.26 deleterious(0.01) possibly_damaging(0.53) TCGA-BH-A0B0-01 3 128976344 128976344 G A COPG1 Missense_Mutation p.R204H 0.18 deleterious(0) probably_damaging(0.973) TCGA-BH-A0B0-01 3 142607660 142607660 C T PCOLCE2 Missense_Mutation p.E27K 0.05 tolerated(0.46) benign(0.045) TCGA-BH-A0B0-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A0B0-01 3 179426610 179426610 C T USP13 Silent p.L224L 0.06 TCGA-BH-A0B0-01 3 183856022 183856022 C T EIF2B5 Silent p.I251I 0.23 TCGA-BH-A0B0-01 3 48309446 48309446 C T ZNF589 Silent p.L89L 0.21 TCGA-BH-A0B0-01 4 154626057 154626057 C T TLR2 Silent p.F666F 0.08 TCGA-BH-A0B0-01 5 132202522 132202522 G A UQCRQ Intron 0.31 TCGA-BH-A0B0-01 5 135389690 135389690 C T TGFBI Silent p.F395F 0.24 TCGA-BH-A0B0-01 5 141309823 141309823 C T KIAA0141 Silent p.I246I 0.28 TCGA-BH-A0B0-01 5 34915891 34915891 G A BRIX1 Silent p.A16A 0.26 TCGA-BH-A0B0-01 5 39288987 39288987 C G C9 Missense_Mutation p.E495Q 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-BH-A0B0-01 5 5262783 5262783 G A ADAMTS16 Silent p.V892V 0.34 TCGA-BH-A0B0-01 6 10407071 10407071 C T TFAP2A Missense_Mutation p.E163K 0.20 deleterious(0.04) benign(0.235) TCGA-BH-A0B0-01 6 160494353 160494353 C T IGF2R Missense_Mutation p.S1600F 0.24 deleterious(0) possibly_damaging(0.892) TCGA-BH-A0B0-01 6 27100867 27100867 A G HIST1H2AG Missense_Mutation p.K6R 0.26 deleterious_low_confidence(0.01) benign(0.031) TCGA-BH-A0B0-01 6 486757 486757 C A EXOC2 Nonsense_Mutation p.E897* 0.10 TCGA-BH-A0B0-01 6 97627350 97627350 T C MMS22L Missense_Mutation p.M824V 0.40 deleterious(0.03) probably_damaging(0.915) TCGA-BH-A0B0-01 7 102453708 102453708 C T FBXL13 3'UTR 0.26 TCGA-BH-A0B0-01 7 102453790 102453790 C G FBXL13 Nonstop_Mutation p.*736Sext*26 0.24 TCGA-BH-A0B0-01 7 112724142 112724142 C T GPR85 Missense_Mutation p.R212Q 0.07 deleterious(0.02) possibly_damaging(0.895) TCGA-BH-A0B0-01 7 141366198 141366198 G A KIAA1147 Nonsense_Mutation p.Q237* 0.03 TCGA-BH-A0B0-01 7 73790402 73790402 G A CLIP2 Silent p.Q557Q 0.42 TCGA-BH-A0B0-01 7 92027712 92027712 C T ANKIB1 Missense_Mutation p.R907W 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.667) TCGA-BH-A0B0-01 8 28999688 28999688 C T KIF13B Missense_Mutation p.E774K 0.18 tolerated(0.54) benign(0.062) TCGA-BH-A0B0-01 8 56436760 56436760 C T XKR4 Missense_Mutation p.R643W 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A0B0-01 9 108483865 108483865 C T TMEM38B Missense_Mutation p.S106L 0.26 deleterious(0.01) possibly_damaging(0.882) TCGA-BH-A0B0-01 9 113166798 113166798 C G SVEP1 Missense_Mutation p.D3159H 0.23 probably_damaging(0.997) TCGA-BH-A0B0-01 9 132397668 132397668 C T NTMT1 Silent p.L199L 0.14 TCGA-BH-A0B0-01 9 140127565 140127565 G C SLC34A3 Missense_Mutation p.Q186H 0.09 deleterious(0.01) benign(0.001) TCGA-BH-A0B0-01 9 33318954 33318954 C T NFX1 Nonsense_Mutation p.Q579* 0.05 TCGA-BH-A0B0-01 9 6252967 6252967 G A IL33 Missense_Mutation p.D149N 0.24 deleterious(0) possibly_damaging(0.882) TCGA-BH-A0B0-01 9 96850484 96850484 G A PTPDC1 Silent p.G183G 0.09 TCGA-BH-A0B0-01 X 101097746 101097746 C G NXF5 Missense_Mutation p.D7H 0.26 deleterious(0.03) benign(0.04) TCGA-BH-A0B0-01 X 107939681 107939681 C T COL4A5 3'UTR 0.42 TCGA-BH-A0B0-01 X 129318409 129318409 G A RAB33A Missense_Mutation p.G137R 0.20 tolerated(0.79) possibly_damaging(0.885) TCGA-BH-A0B0-01 X 14882981 14882981 C T FANCB Missense_Mutation p.E218K 0.07 tolerated(0.15) benign(0.144) TCGA-BH-A0B0-01 X 1540559 1540559 G C ASMTL Missense_Mutation p.L413V 0.03 tolerated(0.25) benign(0.05) TCGA-BH-A0B0-01 X 154490356 154490356 C T RAB39B Missense_Mutation p.C125Y 0.29 tolerated(1) probably_damaging(0.992) TCGA-BH-A0B0-01 X 53589797 53589797 C T HUWE1 Missense_Mutation p.R2400Q 0.23 probably_damaging(0.945) TCGA-BH-A0B0-01 X 76813032 76813032 G A ATRX Missense_Mutation p.R2197C 0.26 probably_damaging(0.985) TCGA-BH-A0B3-01 11 92531859 92531859 C T FAT3 Silent p.L1894L 0.15 TCGA-BH-A0B3-01 12 117723956 117723956 G A NOS1 Missense_Mutation p.R415W 0.49 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B3-01 15 65443008 65443008 T A CLPX 3'UTR 0.39 TCGA-BH-A0B3-01 17 19459153 19459153 C G SLC47A1 Missense_Mutation p.L262V 0.05 deleterious(0) probably_damaging(0.998) TCGA-BH-A0B3-01 18 2939590 2939594 TGGGG - LPIN2 Frame_Shift_Del p.P236Dfs*5 0.40 TCGA-BH-A0B3-01 1 11147505 11147505 C G EXOSC10 Missense_Mutation p.K363N 0.04 deleterious(0) probably_damaging(1) TCGA-BH-A0B3-01 1 224318236 224318236 G C FBXO28 Missense_Mutation p.E110D 0.07 tolerated(0.24) benign(0.185) TCGA-BH-A0B3-01 1 34042946 34042946 C T CSMD2 Missense_Mutation p.R2511Q 0.44 tolerated(0.32) benign(0.037) TCGA-BH-A0B3-01 20 55208476 55208476 G A TFAP2C Missense_Mutation p.M218I 0.14 tolerated(0.29) benign(0.002) TCGA-BH-A0B3-01 3 164735770 164735807 TGTTGAGTAAGAAAACACCATGAGCATTGCCCTCCTCT - SI Frame_Shift_Del p.E1158Qfs*41 0.15 TCGA-BH-A0B3-01 4 3951270 3951270 C A FAM86EP Intron 0.25 TCGA-BH-A0B3-01 5 121786792 121786792 C A SNCAIP Silent p.P750P 0.39 TCGA-BH-A0B3-01 5 140750987 140750987 C A PCDHGB3 Missense_Mutation p.D342E 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B3-01 5 151183498 151183498 G A G3BP1 Missense_Mutation p.R416Q 0.05 tolerated(0.06) benign(0.005) TCGA-BH-A0B3-01 5 178359173 178359173 C A ZFP2 Missense_Mutation p.L287I 0.08 tolerated(0.32) probably_damaging(0.964) TCGA-BH-A0B3-01 7 12258148 12258148 G A TMEM106B Splice_Site p.X94_splice 0.10 TCGA-BH-A0B3-01 9 133755477 133755477 C A ABL1 Missense_Mutation p.D501E 0.42 tolerated(0.52) benign(0.011) TCGA-BH-A0B3-01 X 147743942 147743942 G T AFF2 Nonsense_Mutation p.E232* 0.14 TCGA-BH-A0B3-01 X 3002309 3002309 C T ARSF Silent p.C144C 0.05 TCGA-BH-A0B3-01 X 32662397 32662397 G A DMD Missense_Mutation p.R395W 0.37 benign(0) TCGA-BH-A0B6-01 10 102056047 102056047 G C PKD2L1 Silent p.L396L 0.20 TCGA-BH-A0B6-01 10 103294461 103294461 C T BTRC Missense_Mutation p.H381Y 0.18 deleterious(0.05) possibly_damaging(0.904) TCGA-BH-A0B6-01 10 103545831 103545831 C T MGEA5 3'UTR 0.35 TCGA-BH-A0B6-01 10 104129471 104129471 G A GBF1 Missense_Mutation p.E1051K 0.23 deleterious(0) probably_damaging(0.994) TCGA-BH-A0B6-01 10 106014686 106014686 G T GSTO1 5'UTR 0.18 TCGA-BH-A0B6-01 10 115804330 115804330 G A ADRB1 Missense_Mutation p.E147K 0.07 deleterious(0) probably_damaging(0.998) TCGA-BH-A0B6-01 10 116014797 116014797 G A VWA2 Missense_Mutation p.S84N 0.14 tolerated(1) benign(0.008) TCGA-BH-A0B6-01 10 121607216 121607216 C G MCMBP Missense_Mutation p.D246H 0.16 deleterious(0.02) possibly_damaging(0.491) TCGA-BH-A0B6-01 10 125804103 125804103 C T CHST15 Silent p.K293K 0.19 TCGA-BH-A0B6-01 10 133978209 133978209 G C JAKMIP3 Missense_Mutation p.Q818H 0.25 tolerated(0.11) probably_damaging(1) TCGA-BH-A0B6-01 10 134902490 134902490 A T GPR123 Intron 0.11 TCGA-BH-A0B6-01 10 15210612 15210612 C T NMT2 5'UTR 0.11 TCGA-BH-A0B6-01 10 16957944 16957944 G A CUBN Silent p.F2362F 0.14 TCGA-BH-A0B6-01 10 17271827 17271827 G C VIM Missense_Mutation p.E136Q 0.08 tolerated(0.28) probably_damaging(0.99) TCGA-BH-A0B6-01 10 18254617 18254617 C G SLC39A12 Nonsense_Mutation p.S250* 0.14 TCGA-BH-A0B6-01 10 22610605 22610605 C G BMI1 5'UTR 0.19 TCGA-BH-A0B6-01 10 23287318 23287318 C T ARMC3 Missense_Mutation p.R473W 0.25 deleterious(0) probably_damaging(0.971) TCGA-BH-A0B6-01 10 27459563 27459563 G T MASTL Missense_Mutation p.D559Y 0.12 deleterious(0) possibly_damaging(0.786) TCGA-BH-A0B6-01 10 27551948 27551948 G A ARMC4P1 RNA 0.21 TCGA-BH-A0B6-01 10 27552127 27552127 G C ARMC4P1 RNA 0.16 TCGA-BH-A0B6-01 10 28905246 28905246 C T WAC Silent p.L567L 0.19 TCGA-BH-A0B6-01 10 29751232 29751232 C T SVIL Missense_Mutation p.E2126K 0.08 deleterious(0.05) probably_damaging(0.987) TCGA-BH-A0B6-01 10 29822248 29822248 C G SVIL Missense_Mutation p.D350H 0.14 tolerated_low_confidence(0.18) benign(0.013) TCGA-BH-A0B6-01 10 3176700 3176700 G A PFKP Missense_Mutation p.R683K 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 10 47087782 47087782 C G NPY4R Missense_Mutation p.I333M 0.10 tolerated(0.15) benign(0.004) TCGA-BH-A0B6-01 10 48388468 48388468 C G RBP3 Missense_Mutation p.E804Q 0.33 tolerated(0.06) possibly_damaging(0.728) TCGA-BH-A0B6-01 10 49365117 49365117 G C FRMPD2 3'UTR 0.23 TCGA-BH-A0B6-01 10 50835753 50835753 G A CHAT Missense_Mutation p.E345K 0.12 tolerated(0.5) possibly_damaging(0.561) TCGA-BH-A0B6-01 10 52389530 52389530 G C RP11-50E11.3 RNA 0.10 TCGA-BH-A0B6-01 10 53458881 53458881 C G CSTF2T Silent p.L143L 0.27 TCGA-BH-A0B6-01 10 5782304 5782304 C T FAM208B Missense_Mutation p.S724F 0.36 deleterious(0.02) probably_damaging(0.95) TCGA-BH-A0B6-01 10 72604358 72604358 G C SGPL1 Silent p.L52L 0.12 TCGA-BH-A0B6-01 10 74034581 74034581 C T DDIT4 Nonsense_Mutation p.R112* 0.30 TCGA-BH-A0B6-01 10 75532243 75532243 C T AC022400.2 Missense_Mutation p.E46K 0.38 unknown(0) TCGA-BH-A0B6-01 10 76748774 76748774 C T KAT6B Intron 0.10 TCGA-BH-A0B6-01 10 76990679 76990679 C G VDAC2 Missense_Mutation p.L288V 0.11 tolerated(0.06) benign(0.009) TCGA-BH-A0B6-01 10 88476470 88476470 G T LDB3 Nonsense_Mutation p.E545* 0.18 TCGA-BH-A0B6-01 10 91492679 91492679 C G KIF20B Missense_Mutation p.S764C 0.13 deleterious(0.03) possibly_damaging(0.896) TCGA-BH-A0B6-01 10 93809560 93809560 C G CPEB3 3'UTR 0.26 TCGA-BH-A0B6-01 10 96495282 96495282 C G CYP2C18 3'UTR 0.14 TCGA-BH-A0B6-01 10 98084025 98084025 C T DNTT Silent p.L251L 0.07 TCGA-BH-A0B6-01 11 1024897 1024897 C T MUC6 Missense_Mutation p.E1058K 0.13 unknown(0) TCGA-BH-A0B6-01 11 1025239 1025239 C T MUC6 Silent p.L976L 0.13 TCGA-BH-A0B6-01 11 104815495 104815495 G A CASP4 Silent p.L373L 0.08 TCGA-BH-A0B6-01 11 108009651 108009651 G A ACAT1 Silent p.E154E 0.10 TCGA-BH-A0B6-01 11 108183212 108183212 G A ATM Missense_Mutation p.G1998E 0.50 tolerated(0.05) possibly_damaging(0.78) TCGA-BH-A0B6-01 11 10825565 10825565 C T EIF4G2 Missense_Mutation p.E195K 0.21 tolerated(0.07) possibly_damaging(0.67) TCGA-BH-A0B6-01 11 117280452 117280452 G A CEP164 Silent p.S1289S 0.17 TCGA-BH-A0B6-01 11 11895388 11895388 G C USP47 Intron 0.23 TCGA-BH-A0B6-01 11 119290190 119290190 C G THY1 Missense_Mutation p.Q138H 0.24 tolerated(0.09) probably_damaging(0.997) TCGA-BH-A0B6-01 11 11985983 11985983 G A DKK3 3'UTR 0.23 TCGA-BH-A0B6-01 11 120346078 120346078 C G ARHGEF12 Missense_Mutation p.L1047V 0.31 deleterious(0) possibly_damaging(0.886) TCGA-BH-A0B6-01 11 1213130 1213130 C G MUC5AC RNA 0.06 TCGA-BH-A0B6-01 11 124007909 124007909 C T VWA5A Missense_Mutation p.H605Y 0.24 tolerated(0.45) benign(0.003) TCGA-BH-A0B6-01 11 124180216 124180216 G A OR8D1 Silent p.F149F 0.14 TCGA-BH-A0B6-01 11 126164058 126164058 C T TIRAP 3'Flank 0.23 TCGA-BH-A0B6-01 11 134048630 134048630 G A NCAPD3 Missense_Mutation p.S894L 0.21 tolerated(0.24) benign(0.004) TCGA-BH-A0B6-01 11 13716450 13716450 G A FAR1 Silent p.Q46Q 0.16 TCGA-BH-A0B6-01 11 16068182 16068182 G C SOX6 Missense_Mutation p.Q501E 0.32 deleterious(0.01) possibly_damaging(0.591) TCGA-BH-A0B6-01 11 17600052 17600052 C T OTOG Missense_Mutation p.S925L 0.33 possibly_damaging(0.778) TCGA-BH-A0B6-01 11 18332956 18332956 C A HPS5 Missense_Mutation p.D88Y 0.20 deleterious(0.02) benign(0.159) TCGA-BH-A0B6-01 11 20409577 20409577 C T PRMT3 Missense_Mutation p.A14V 0.08 benign(0.099) TCGA-BH-A0B6-01 11 30033478 30033478 C G KCNA4 Missense_Mutation p.D250H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 11 33047337 33047337 C T DEPDC7 Missense_Mutation p.S69L 0.21 deleterious(0) probably_damaging(0.99) TCGA-BH-A0B6-01 11 33564296 33564296 G C KIAA1549L Missense_Mutation p.R99T 0.11 tolerated_low_confidence(0.08) benign(0.002) TCGA-BH-A0B6-01 11 35198253 35198253 G T CD44 Nonsense_Mutation p.E67* 0.29 TCGA-BH-A0B6-01 11 36595236 36595236 C G RAG1 Missense_Mutation p.P128A 0.37 tolerated_low_confidence(0.06) probably_damaging(0.971) TCGA-BH-A0B6-01 11 397562 397562 C T PKP3 Missense_Mutation p.S323L 0.13 deleterious(0) benign(0.446) TCGA-BH-A0B6-01 11 4133204 4133204 G C RRM1 Missense_Mutation p.E188Q 0.17 tolerated_low_confidence(0.09) benign(0.329) TCGA-BH-A0B6-01 11 44072129 44072129 G A ACCSL Missense_Mutation p.E198K 0.29 deleterious(0.03) benign(0.281) TCGA-BH-A0B6-01 11 44089193 44089193 C G ACCS Missense_Mutation p.Q6E 0.19 tolerated_low_confidence(0.07) benign(0.003) TCGA-BH-A0B6-01 11 44089223 44089223 C T ACCS Silent p.L16L 0.22 TCGA-BH-A0B6-01 11 46393034 46393034 C T DGKZ Intron 0.23 TCGA-BH-A0B6-01 11 47193262 47193262 G C ARFGAP2 Silent p.L254L 0.28 TCGA-BH-A0B6-01 11 47236630 47236630 C T DDB2 5'UTR 0.21 TCGA-BH-A0B6-01 11 47269662 47269662 G C ACP2 Nonsense_Mutation p.S46* 0.12 TCGA-BH-A0B6-01 11 47365084 47365084 G C MYBPC3 Silent p.V394V 0.15 TCGA-BH-A0B6-01 11 5462347 5462347 C T OR51I1 Missense_Mutation p.R133H 0.29 tolerated(0.27) benign(0.003) TCGA-BH-A0B6-01 11 55606511 55606511 C T OR5D16 Missense_Mutation p.S95L 0.09 deleterious(0.01) possibly_damaging(0.852) TCGA-BH-A0B6-01 11 55606808 55606808 C G OR5D16 Missense_Mutation p.S194C 0.12 deleterious(0.04) possibly_damaging(0.726) TCGA-BH-A0B6-01 11 55927282 55927282 G C OR8K5 Missense_Mutation p.S171C 0.13 tolerated_low_confidence(0.1) benign(0.089) TCGA-BH-A0B6-01 11 57471395 57471395 C T MED19 3'UTR 0.44 TCGA-BH-A0B6-01 11 57511914 57511914 G C BTBD18 Missense_Mutation p.L611V 0.09 tolerated_low_confidence(0.1) benign(0.005) TCGA-BH-A0B6-01 11 57585571 57585571 C T CTNND1 3'UTR 0.17 TCGA-BH-A0B6-01 11 58034944 58034944 C A OR10W1 Missense_Mutation p.L129F 0.17 tolerated(0.74) benign(0.003) TCGA-BH-A0B6-01 11 591405 591405 G A PHRF1 Missense_Mutation p.D148N 0.09 deleterious(0.02) benign(0.384) TCGA-BH-A0B6-01 11 6024172 6024172 G A OR56A4 Silent p.L69L 0.37 TCGA-BH-A0B6-01 11 60668823 60668823 C G PRPF19 Missense_Mutation p.E196Q 0.10 tolerated(0.08) benign(0.146) TCGA-BH-A0B6-01 11 61250191 61250191 G A PPP1R32 Missense_Mutation p.D98N 0.22 tolerated(0.07) probably_damaging(1) TCGA-BH-A0B6-01 11 61283476 61283476 G A SYT7 3'Flank 0.18 TCGA-BH-A0B6-01 11 61906431 61906431 G A INCENP Silent p.P415P 0.10 TCGA-BH-A0B6-01 11 62397082 62397082 G C GANAB Missense_Mutation p.F626L 0.26 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 11 63064904 63064904 C T SLC22A10 Silent p.I212I 0.22 TCGA-BH-A0B6-01 11 63312301 63312301 G A RARRES3 Silent p.V109V 0.19 TCGA-BH-A0B6-01 11 64084384 64084384 G A TRMT112 Silent p.I109I 0.10 TCGA-BH-A0B6-01 11 6426594 6426594 C T APBB1 Intron 0.10 TCGA-BH-A0B6-01 11 64556715 64556715 G A MAP4K2 3'UTR 0.16 TCGA-BH-A0B6-01 11 64877359 64877359 G A VPS51 Silent p.K614K 0.18 TCGA-BH-A0B6-01 11 65351030 65351030 G C EHBP1L1 Missense_Mutation p.E963Q 0.21 tolerated(0.1) possibly_damaging(0.732) TCGA-BH-A0B6-01 11 66063777 66063777 C G TMEM151A 3'UTR 0.25 TCGA-BH-A0B6-01 11 66461725 66461725 G A SPTBN2 Missense_Mutation p.S1463L 0.21 tolerated(0.11) benign(0.007) TCGA-BH-A0B6-01 11 6651433 6651433 G A DCHS1 Missense_Mutation p.S1531L 0.18 deleterious(0) possibly_damaging(0.526) TCGA-BH-A0B6-01 11 67022926 67022926 G C KDM2A 3'UTR 0.08 TCGA-BH-A0B6-01 11 67168587 67168587 G A PPP1CA Silent p.L58L 0.29 TCGA-BH-A0B6-01 11 6738322 6738322 G A GVINP1 RNA 0.17 TCGA-BH-A0B6-01 11 70034220 70034220 C T ANO1 3'UTR 0.29 TCGA-BH-A0B6-01 11 70316734 70316734 C T SHANK2 3'UTR 0.17 TCGA-BH-A0B6-01 11 71238325 71238325 C A KRTAP5-7 5'UTR 0.24 TCGA-BH-A0B6-01 11 72525563 72525563 C T ATG16L2 Missense_Mutation p.R25W 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 11 74717362 74717362 C T NEU3 Missense_Mutation p.S404F 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 11 76696699 76696699 C TTG ACER3 Frame_Shift_Ins p.K112* 0.13 TCGA-BH-A0B6-01 11 77589870 77589870 G C INTS4 3'UTR 0.09 TCGA-BH-A0B6-01 11 77671428 77671428 G T INTS4 Missense_Mutation p.H223N 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A0B6-01 11 77672044 77672044 G A INTS4 Silent p.F204F 0.08 TCGA-BH-A0B6-01 11 77672127 77672127 G C INTS4 Missense_Mutation p.L177V 0.14 deleterious(0.02) probably_damaging(0.982) TCGA-BH-A0B6-01 11 82549517 82549517 G A PRCP Nonsense_Mutation p.Q417* 0.13 TCGA-BH-A0B6-01 11 85371453 85371453 C G CREBZF 3'Flank 0.20 TCGA-BH-A0B6-01 11 85692951 85692951 C T PICALM Missense_Mutation p.D538N 0.30 tolerated(1) benign(0.016) TCGA-BH-A0B6-01 11 8704236 8704236 G C RPL27A 5'UTR 0.14 TCGA-BH-A0B6-01 11 900964 900964 G C CHID1 Silent p.V162V 0.12 TCGA-BH-A0B6-01 11 92715488 92715488 G A MTNR1B 3'UTR 0.16 TCGA-BH-A0B6-01 11 94230086 94230086 G A ANKRD49 Missense_Mutation p.R76K 0.25 tolerated(1) benign(0) TCGA-BH-A0B6-01 11 9482550 9482550 G C ZNF143 5'UTR 0.15 TCGA-BH-A0B6-01 12 100704969 100704969 G C SCYL2 Missense_Mutation p.E210Q 0.14 tolerated(0.49) benign(0.012) TCGA-BH-A0B6-01 12 101504219 101504219 T C ANO4 Silent p.A694A 0.11 TCGA-BH-A0B6-01 12 102271529 102271529 C T DRAM1 5'UTR 0.10 TCGA-BH-A0B6-01 12 104379431 104379431 G C TDG Missense_Mutation p.E339Q 0.08 deleterious(0.05) possibly_damaging(0.493) TCGA-BH-A0B6-01 12 10462017 10462017 C G KLRD1 Missense_Mutation p.S13C 0.14 deleterious(0) probably_damaging(0.997) TCGA-BH-A0B6-01 12 104720128 104720128 A G TXNRD1 Missense_Mutation p.M438V 0.09 tolerated(0.1) benign(0.002) TCGA-BH-A0B6-01 12 105501532 105501532 C A KIAA1033 5'UTR 0.17 TCGA-BH-A0B6-01 12 105527590 105527590 G A KIAA1033 Missense_Mutation p.M414I 0.08 tolerated(0.19) benign(0.002) TCGA-BH-A0B6-01 12 105561942 105561942 C G KIAA1033 3'UTR 0.33 TCGA-BH-A0B6-01 12 10758913 10758913 G A MAGOHB Silent p.F136F 0.17 TCGA-BH-A0B6-01 12 10959018 10959018 G C TAS2R8 Missense_Mutation p.L188V 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A0B6-01 12 109921771 109921771 C G UBE3B Missense_Mutation p.I89M 0.17 tolerated(0.27) benign(0.001) TCGA-BH-A0B6-01 12 111923576 111923576 G A ATXN2 Nonsense_Mutation p.Q960* 0.23 TCGA-BH-A0B6-01 12 112492334 112492334 C T NAA25 Missense_Mutation p.E496K 0.18 deleterious(0.01) benign(0.086) TCGA-BH-A0B6-01 12 112492344 112492344 C G NAA25 Silent p.L492L 0.16 TCGA-BH-A0B6-01 12 112572675 112572675 C G TRAFD1 Missense_Mutation p.Q61E 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-BH-A0B6-01 12 113633544 113633544 C G IQCD Missense_Mutation p.E294Q 0.15 tolerated(0.13) benign(0.038) TCGA-BH-A0B6-01 12 113824889 113824889 G A PLBD2 Silent p.L478L 0.15 TCGA-BH-A0B6-01 12 117718580 117718580 G T NOS1 Missense_Mutation p.Q492K 0.10 tolerated(0.1) possibly_damaging(0.748) TCGA-BH-A0B6-01 12 123105015 123105015 C G KNTC1 Intron 0.11 TCGA-BH-A0B6-01 12 123344618 123344618 G C HIP1R Silent p.L830L 0.09 TCGA-BH-A0B6-01 12 12870769 12870769 G A CDKN1B 5'UTR 0.14 TCGA-BH-A0B6-01 12 12871086 12871086 G T CDKN1B Nonsense_Mutation p.E105* 0.27 TCGA-BH-A0B6-01 12 14928197 14928197 C T H2AFJ 3'UTR 0.25 TCGA-BH-A0B6-01 12 14939774 14939774 G A WBP11 3'UTR 0.23 TCGA-BH-A0B6-01 12 16189254 16189254 G A DERA Nonsense_Mutation p.W280* 0.16 TCGA-BH-A0B6-01 12 18793483 18793483 G A PIK3C2G Missense_Mutation p.E1394K 0.22 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 12 2064713 2064713 G T DCP1B Missense_Mutation p.S179Y 0.09 deleterious(0) probably_damaging(0.95) TCGA-BH-A0B6-01 12 20709646 20709646 T A PDE3A Splice_Site p.X337_splice 0.15 TCGA-BH-A0B6-01 12 21028338 21028338 G A SLCO1B3 Silent p.L299L 0.17 TCGA-BH-A0B6-01 12 31632842 31632842 G A DENND5B Silent p.I195I 0.16 TCGA-BH-A0B6-01 12 45000974 45000974 G A NELL2 Silent p.F597F 0.20 TCGA-BH-A0B6-01 12 4737352 4737352 G C AKAP3 Missense_Mutation p.S239C 0.26 deleterious(0.02) benign(0.376) TCGA-BH-A0B6-01 12 49161806 49161806 C T ADCY6 3'UTR 0.20 TCGA-BH-A0B6-01 12 4921385 4921385 G A KCNA6 3'UTR 0.27 TCGA-BH-A0B6-01 12 49239453 49239453 G C DDX23 Missense_Mutation p.S38C 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-BH-A0B6-01 12 50232712 50232712 G C BCDIN3D Silent p.L107L 0.26 TCGA-BH-A0B6-01 12 50492566 50492566 C T SMARCD1 Nonsense_Mutation p.Q488* 0.10 TCGA-BH-A0B6-01 12 50871385 50871385 G A LARP4 3'UTR 0.14 TCGA-BH-A0B6-01 12 51591678 51591678 G T POU6F1 5'UTR 0.14 TCGA-BH-A0B6-01 12 54427141 54427141 G T HOXC5 Missense_Mutation p.A79S 0.12 tolerated(0.77) benign(0.015) TCGA-BH-A0B6-01 12 56121091 56121091 G A CD63 Silent p.V33V 0.11 TCGA-BH-A0B6-01 12 56490388 56490388 C A ERBB3 Silent p.V719V 0.12 TCGA-BH-A0B6-01 12 56629024 56629024 C T SLC39A5 Missense_Mutation p.R240C 0.13 deleterious(0.04) probably_damaging(0.912) TCGA-BH-A0B6-01 12 57485732 57485732 G C NAB2 Missense_Mutation p.G303A 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 12 57486867 57486867 G A NAB2 Missense_Mutation p.E389K 0.24 tolerated(0.5) benign(0.204) TCGA-BH-A0B6-01 12 57488685 57488685 G C NAB2 3'UTR 0.25 TCGA-BH-A0B6-01 12 57488693 57488693 A G NAB2 3'UTR 0.26 TCGA-BH-A0B6-01 12 57489089 57489089 G A NAB2 3'UTR 0.37 TCGA-BH-A0B6-01 12 57490493 57490493 G A STAT6 Silent p.L802L 0.11 TCGA-BH-A0B6-01 12 57493638 57493638 G A STAT6 Silent p.L552L 0.11 TCGA-BH-A0B6-01 12 57496109 57496109 G A STAT6 Silent p.F492F 0.25 TCGA-BH-A0B6-01 12 57498953 57498953 G A STAT6 Nonsense_Mutation p.Q328* 0.21 TCGA-BH-A0B6-01 12 57501470 57501470 G A STAT6 Missense_Mutation p.S58L 0.24 deleterious(0.04) benign(0.243) TCGA-BH-A0B6-01 12 58025807 58025807 G A B4GALNT1 Missense_Mutation p.L37F 0.19 tolerated(0.54) benign(0.189) TCGA-BH-A0B6-01 12 58213862 58213862 C G CTDSP2 3'UTR 0.15 TCGA-BH-A0B6-01 12 62996697 62996697 G A C12orf61 3'UTR 0.36 TCGA-BH-A0B6-01 12 6439172 6439172 G C TNFRSF1A Missense_Mutation p.P277A 0.11 tolerated(0.24) benign(0.016) TCGA-BH-A0B6-01 12 6443376 6443376 G C TNFRSF1A Nonsense_Mutation p.S25* 0.25 TCGA-BH-A0B6-01 12 6756134 6756134 G C ACRBP Missense_Mutation p.Q30E 0.21 tolerated_low_confidence(0.54) benign(0.022) TCGA-BH-A0B6-01 12 67691215 67691215 C T CAND1 Missense_Mutation p.P174S 0.19 tolerated(1) benign(0.009) TCGA-BH-A0B6-01 12 70209175 70209175 G C RAB3IP Missense_Mutation p.L460F 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0B6-01 12 71029497 71029497 G A PTPRB Silent p.V135V 0.24 TCGA-BH-A0B6-01 12 74932196 74932196 G A ATXN7L3B 3'UTR 0.27 TCGA-BH-A0B6-01 12 80890225 80890225 C T PTPRQ Silent p.L725L 0.13 TCGA-BH-A0B6-01 12 8374623 8374623 C T FAM90A1 Missense_Mutation p.R397Q 0.17 tolerated(0.22) possibly_damaging(0.791) TCGA-BH-A0B6-01 12 85547527 85547527 C G LRRIQ1 Nonsense_Mutation p.S1543* 0.12 TCGA-BH-A0B6-01 12 8673751 8673751 C G CLEC4D Missense_Mutation p.Q178E 0.23 tolerated(0.71) benign(0.037) TCGA-BH-A0B6-01 12 94975969 94975969 C G TMCC3 Missense_Mutation p.E142Q 0.12 deleterious(0) probably_damaging(0.952) TCGA-BH-A0B6-01 12 95688097 95688097 G A VEZT Silent p.L524L 0.17 TCGA-BH-A0B6-01 12 96412987 96412987 C G LTA4H Missense_Mutation p.E224Q 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 12 978094 978094 C T WNK1 Intron 0.10 TCGA-BH-A0B6-01 12 99043451 99043451 C G APAF1 Missense_Mutation p.S172C 0.29 tolerated(0.09) benign(0.003) TCGA-BH-A0B6-01 13 111371686 111371686 G C ING1 Missense_Mutation p.E226Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 13 111955427 111955427 G A ARHGEF7 Missense_Mutation p.M636I 0.32 tolerated(0.3) benign(0) TCGA-BH-A0B6-01 13 25915594 25915594 G C NUPL1 3'UTR 0.22 TCGA-BH-A0B6-01 13 27679955 27679955 C G USP12 Missense_Mutation p.D86H 0.07 deleterious(0) probably_damaging(0.997) TCGA-BH-A0B6-01 13 28196057 28196057 C G POLR1D 5'UTR 0.33 TCGA-BH-A0B6-01 13 28855481 28855481 C G PAN3 Silent p.L783L 0.20 TCGA-BH-A0B6-01 13 31903641 31903641 C T B3GALTL Missense_Mutation p.R445W 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 13 33639486 33639486 G A KL 3'UTR 0.26 TCGA-BH-A0B6-01 13 36049514 36049514 G C MAB21L1 Silent p.L254L 0.16 TCGA-BH-A0B6-01 13 36410237 36410237 C G DCLK1 Missense_Mutation p.E388Q 0.28 tolerated(0.22) possibly_damaging(0.607) TCGA-BH-A0B6-01 13 39430355 39430355 C T FREM2 Missense_Mutation p.H2340Y 0.09 tolerated(0.09) possibly_damaging(0.858) TCGA-BH-A0B6-01 13 41517240 41517240 G T ELF1 Silent p.L218L 0.17 TCGA-BH-A0B6-01 13 41946442 41946442 G C NAA16 Missense_Mutation p.R684T 0.24 deleterious(0) probably_damaging(0.981) TCGA-BH-A0B6-01 13 42873670 42873670 C T AKAP11 Missense_Mutation p.S263F 0.12 deleterious(0.04) probably_damaging(0.914) TCGA-BH-A0B6-01 13 45008320 45008320 C G TSC22D1 3'UTR 0.21 TCGA-BH-A0B6-01 13 45010711 45010711 C T TSC22D1 Intron 0.14 TCGA-BH-A0B6-01 13 45010762 45010762 C T TSC22D1 Intron 0.16 TCGA-BH-A0B6-01 13 46808427 46808427 G A LRRC63 Missense_Mutation p.M311I 0.21 deleterious(0.03) possibly_damaging(0.693) TCGA-BH-A0B6-01 13 52158851 52158851 C G WDFY2 Missense_Mutation p.L10V 0.33 tolerated(0.31) benign(0.073) TCGA-BH-A0B6-01 13 52744130 52744130 C T MRPS31P5 RNA 0.15 TCGA-BH-A0B6-01 13 67205531 67205531 C A PCDH9 Missense_Mutation p.V1051F 0.41 deleterious(0) benign(0.333) TCGA-BH-A0B6-01 13 76141388 76141388 C A UCHL3 Missense_Mutation p.F122L 0.24 deleterious(0.03) probably_damaging(0.971) TCGA-BH-A0B6-01 13 77619219 77619219 C T MYCBP2 3'UTR 0.08 TCGA-BH-A0B6-01 13 96329521 96329521 C T DNAJC3 Silent p.P4P 0.20 TCGA-BH-A0B6-01 14 102349833 102349833 G A PPP2R5C Missense_Mutation p.R219K 0.21 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 14 102881013 102881013 C T TECPR2 Missense_Mutation p.S174F 0.12 deleterious(0.01) probably_damaging(0.928) TCGA-BH-A0B6-01 14 102898394 102898394 C T TECPR2 Missense_Mutation p.S449L 0.25 tolerated(0.1) benign(0.013) TCGA-BH-A0B6-01 14 103999138 103999138 C T TRMT61A Missense_Mutation p.S184L 0.26 tolerated(0.55) benign(0.111) TCGA-BH-A0B6-01 14 104123880 104123880 C G KLC1 Intron 0.30 TCGA-BH-A0B6-01 14 104136606 104136606 G C KLC1 Missense_Mutation p.E325Q 0.22 deleterious(0.03) possibly_damaging(0.84) TCGA-BH-A0B6-01 14 105414834 105414834 G C AHNAK2 Missense_Mutation p.F2318L 0.22 benign(0.294) TCGA-BH-A0B6-01 14 106090843 106090843 C T IGHG4 Silent p.Q318Q 0.15 TCGA-BH-A0B6-01 14 21546585 21546585 G A ARHGEF40 Silent p.L728L 0.19 TCGA-BH-A0B6-01 14 21840067 21840067 C G SUPT16H Missense_Mutation p.G99A 0.09 tolerated(0.09) benign(0.23) TCGA-BH-A0B6-01 14 21899387 21899387 G C CHD8 Missense_Mutation p.S139C 0.08 deleterious_low_confidence(0) benign(0.364) TCGA-BH-A0B6-01 14 22573956 22573956 G C TRAV24 Missense_Mutation p.R59T 0.14 deleterious(0.01) possibly_damaging(0.635) TCGA-BH-A0B6-01 14 23442685 23442685 G T AJUBA Silent p.L528L 0.21 TCGA-BH-A0B6-01 14 23564243 23564243 C T ACIN1 Missense_Mutation p.E85K 0.09 probably_damaging(0.987) TCGA-BH-A0B6-01 14 24423024 24423024 C G DHRS4 Silent p.L9L 0.22 TCGA-BH-A0B6-01 14 24617260 24617260 C T RNF31 Nonsense_Mutation p.Q90* 0.13 TCGA-BH-A0B6-01 14 31364699 31364699 G C STRN3 Nonsense_Mutation p.S771* 0.33 TCGA-BH-A0B6-01 14 31777119 31777119 A T AL136418.1 5'Flank 0.13 TCGA-BH-A0B6-01 14 34420002 34420002 G C EGLN3 5'UTR 0.14 TCGA-BH-A0B6-01 14 35182735 35182735 G A CFL2 Silent p.I12I 0.19 TCGA-BH-A0B6-01 14 35596720 35596720 C T KIAA0391 Missense_Mutation p.S357F 0.11 deleterious(0) probably_damaging(0.983) TCGA-BH-A0B6-01 14 50550436 50550436 G A C14orf183 Missense_Mutation p.P303L 0.32 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-BH-A0B6-01 14 50626186 50626186 C G SOS2 Silent p.V605V 0.06 TCGA-BH-A0B6-01 14 52169259 52169259 C T FRMD6 Silent p.I108I 0.14 TCGA-BH-A0B6-01 14 58839157 58839157 C - ARID4A 3'UTR 0.25 TCGA-BH-A0B6-01 14 60600704 60600704 G C PCNXL4 Missense_Mutation p.R861T 0.18 deleterious(0) probably_damaging(0.969) TCGA-BH-A0B6-01 14 62162402 62162402 C T HIF1A 5'Flank 0.29 TCGA-BH-A0B6-01 14 64604687 64604687 C G SYNE2 Silent p.L4943L 0.22 TCGA-BH-A0B6-01 14 64916102 64916102 G C MTHFD1 Intron 0.29 TCGA-BH-A0B6-01 14 64924931 64924931 G A MTHFD1 Splice_Site p.X907_splice 0.24 TCGA-BH-A0B6-01 14 69078028 69078028 C G RAD51B 3'UTR 0.22 TCGA-BH-A0B6-01 14 69519110 69519110 G A DCAF5 3'UTR 0.34 TCGA-BH-A0B6-01 14 71137836 71137836 C G TTC9 Silent p.L211L 0.25 TCGA-BH-A0B6-01 14 71578031 71578031 G A PCNX 3'UTR 0.15 TCGA-BH-A0B6-01 14 74058884 74058884 G A ACOT4 Missense_Mutation p.G74E 0.11 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 14 75509098 75509098 C T MLH3 Missense_Mutation p.M1121I 0.18 tolerated(0.19) benign(0.004) TCGA-BH-A0B6-01 14 91770047 91770047 C T CCDC88C Silent p.E1211E 0.12 TCGA-BH-A0B6-01 14 95556068 95556068 C G DICER1 3'UTR 0.45 TCGA-BH-A0B6-01 15 101447368 101447368 G A ALDH1A3 Missense_Mutation p.E426K 0.14 tolerated(0.06) benign(0.023) TCGA-BH-A0B6-01 15 101555579 101555579 A G LRRK1 Silent p.R527R 0.21 TCGA-BH-A0B6-01 15 22368556 22368556 G A OR4M2 5'UTR 0.11 TCGA-BH-A0B6-01 15 28436126 28436126 C T HERC2 Silent p.L2878L 0.15 TCGA-BH-A0B6-01 15 34113753 34113753 C T RYR3 Silent p.L3649L 0.21 TCGA-BH-A0B6-01 15 35210546 35210546 G A AQR Nonsense_Mutation p.Q419* 0.31 TCGA-BH-A0B6-01 15 38756368 38756368 C G FAM98B Missense_Mutation p.I69M 0.07 tolerated(0.06) possibly_damaging(0.683) TCGA-BH-A0B6-01 15 40259905 40259905 G C EIF2AK4 Missense_Mutation p.E460Q 0.08 tolerated(0.09) benign(0.082) TCGA-BH-A0B6-01 15 40750963 40750963 C G BAHD1 Silent p.P100P 0.14 TCGA-BH-A0B6-01 15 41063617 41063617 G A C15orf62 3'UTR 0.15 TCGA-BH-A0B6-01 15 41063725 41063725 G T C15orf62 3'UTR 0.13 TCGA-BH-A0B6-01 15 41245635 41245635 G A CHAC1 5'UTR 0.29 TCGA-BH-A0B6-01 15 41319819 41319819 G C INO80 Missense_Mutation p.S1008C 0.14 tolerated(0.07) possibly_damaging(0.541) TCGA-BH-A0B6-01 15 41476098 41476098 C G EXD1 3'UTR 0.16 TCGA-BH-A0B6-01 15 41961442 41961442 C G MGA Nonsense_Mutation p.S117* 0.13 TCGA-BH-A0B6-01 15 42140773 42140773 C T SPTBN5 3'UTR 0.13 TCGA-BH-A0B6-01 15 43473405 43473405 G C TMEM62 Missense_Mutation p.D505H 0.12 deleterious(0) possibly_damaging(0.716) TCGA-BH-A0B6-01 15 43815991 43815991 G C MAP1A Missense_Mutation p.D774H 0.18 probably_damaging(1) TCGA-BH-A0B6-01 15 44859755 44859755 G C SPG11 Missense_Mutation p.I2207M 0.14 deleterious(0) possibly_damaging(0.844) TCGA-BH-A0B6-01 15 51289626 51289626 C T AP4E1 Missense_Mutation p.S817F 0.12 tolerated(0.09) benign(0.115) TCGA-BH-A0B6-01 15 52263900 52263900 C T LEO1 Missense_Mutation p.E15K 0.22 deleterious_low_confidence(0.01) benign(0.098) TCGA-BH-A0B6-01 15 52338064 52338064 G C MAPK6 5'UTR 0.10 TCGA-BH-A0B6-01 15 52556402 52556402 C T MYO5C Silent p.E344E 0.20 TCGA-BH-A0B6-01 15 52901013 52901013 C A FAM214A Nonsense_Mutation p.E700* 0.13 TCGA-BH-A0B6-01 15 56388302 56388302 C T RFX7 Missense_Mutation p.E542K 0.10 deleterious_low_confidence(0.02) benign(0.026) TCGA-BH-A0B6-01 15 59179519 59179519 G A SLTM Missense_Mutation p.H866Y 0.08 deleterious(0.03) probably_damaging(0.962) TCGA-BH-A0B6-01 15 66844149 66844149 C G LCTL Missense_Mutation p.D459H 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 15 67835656 67835656 G C MAP2K5 5'UTR 0.11 TCGA-BH-A0B6-01 15 68122549 68122549 C T SKOR1 Missense_Mutation p.H713Y 0.17 tolerated_low_confidence(0.05) benign(0.291) TCGA-BH-A0B6-01 15 69003908 69003908 G A CORO2B Missense_Mutation p.E171K 0.17 deleterious(0.02) benign(0.178) TCGA-BH-A0B6-01 15 71305170 71305170 G A LRRC49 Missense_Mutation p.E546K 0.08 deleterious(0) probably_damaging(0.92) TCGA-BH-A0B6-01 15 72195299 72195299 G C MYO9A Missense_Mutation p.Q995E 0.09 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 15 72578418 72578418 C T CELF6 3'UTR 0.15 TCGA-BH-A0B6-01 15 74177207 74177207 G C TBC1D21 Silent p.L151L 0.16 TCGA-BH-A0B6-01 15 74919701 74919701 G A CLK3 Missense_Mutation p.E424K 0.11 tolerated(0.06) benign(0.099) TCGA-BH-A0B6-01 15 75664538 75664538 C T SIN3A Missense_Mutation p.V1202I 0.19 tolerated(0.11) possibly_damaging(0.635) TCGA-BH-A0B6-01 15 75931485 75931485 G C IMP3 3'UTR 0.12 TCGA-BH-A0B6-01 15 78765656 78765656 G A IREB2 Missense_Mutation p.G319E 0.14 deleterious(0) probably_damaging(0.99) TCGA-BH-A0B6-01 15 78894479 78894479 C G CHRNA3 Missense_Mutation p.D169H 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 15 79058034 79058034 G A ADAMTS7 Missense_Mutation p.P1407S 0.09 tolerated(0.58) benign(0.135) TCGA-BH-A0B6-01 15 80890120 80890120 C T ARNT2 3'UTR 0.06 TCGA-BH-A0B6-01 15 81592433 81592433 C A IL16 Silent p.S922S 0.21 TCGA-BH-A0B6-01 15 91575709 91575709 C T AC068831.10 RNA 0.15 TCGA-BH-A0B6-01 15 93569286 93569286 C G CHD2 3'UTR 0.08 TCGA-BH-A0B6-01 16 11771211 11771211 C G SNN 3'UTR 0.11 TCGA-BH-A0B6-01 16 1261713 1261713 C G CACNA1H Intron 0.31 TCGA-BH-A0B6-01 16 135462 135462 C T MPG Nonsense_Mutation p.Q195* 0.11 TCGA-BH-A0B6-01 16 14345861 14345861 G A MKL2 Missense_Mutation p.G799E 0.24 deleterious(0.01) probably_damaging(1) TCGA-BH-A0B6-01 16 14761577 14761577 C T BFAR Nonsense_Mutation p.Q416* 0.16 TCGA-BH-A0B6-01 16 1511649 1511649 G A CLCN7 Silent p.P80P 0.20 TCGA-BH-A0B6-01 16 15494712 15494712 C T MPV17L Silent p.L127L 0.17 TCGA-BH-A0B6-01 16 1818302 1818302 C T MAPK8IP3 Missense_Mutation p.P1221L 0.32 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 16 1819622 1819622 C A MAPK8IP3 3'UTR 0.10 TCGA-BH-A0B6-01 16 19131736 19131736 G A ITPRIPL2 3'UTR 0.17 TCGA-BH-A0B6-01 16 19194943 19194943 C T SYT17 Missense_Mutation p.S142L 0.19 deleterious(0.02) benign(0.017) TCGA-BH-A0B6-01 16 22095247 22095247 C G C16orf52 3'UTR 0.33 TCGA-BH-A0B6-01 16 2747943 2747943 C G KCTD5 Nonsense_Mutation p.S133* 0.12 TCGA-BH-A0B6-01 16 278904 278904 G C LUC7L Intron 0.15 TCGA-BH-A0B6-01 16 28509153 28509153 G A APOBR Missense_Mutation p.E931K 0.28 deleterious(0.02) possibly_damaging(0.504) TCGA-BH-A0B6-01 16 30077131 30077131 C T ALDOA Intron 0.35 TCGA-BH-A0B6-01 16 30410298 30410298 G A ZNF48 Missense_Mutation p.C576Y 0.09 deleterious(0) probably_damaging(0.939) TCGA-BH-A0B6-01 16 30581179 30581179 C T ZNF688 3'UTR 0.14 TCGA-BH-A0B6-01 16 3064273 3064273 C T CLDN9 3'UTR 0.10 TCGA-BH-A0B6-01 16 30663158 30663158 G A PRR14 Missense_Mutation p.R22Q 0.27 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-BH-A0B6-01 16 3294475 3294475 G A MEFV Missense_Mutation p.S575L 0.32 tolerated(0.37) benign(0.005) TCGA-BH-A0B6-01 16 3294548 3294548 G A MEFV Nonsense_Mutation p.Q551* 0.35 TCGA-BH-A0B6-01 16 3299509 3299509 G T MEFV Silent p.I394I 0.38 TCGA-BH-A0B6-01 16 3778807 3778807 G A CREBBP Nonsense_Mutation p.Q2081* 0.09 TCGA-BH-A0B6-01 16 4390379 4390379 C A CORO7-PAM16 Nonsense_Mutation p.E1030* 0.20 TCGA-BH-A0B6-01 16 4511898 4511898 G C NMRAL1 Missense_Mutation p.F261L 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-BH-A0B6-01 16 47730305 47730305 C T PHKB Missense_Mutation p.S970L 0.34 deleterious(0) possibly_damaging(0.877) TCGA-BH-A0B6-01 16 4882060 4882060 C T GLYR1 Missense_Mutation p.E153K 0.26 tolerated(0.46) benign(0.001) TCGA-BH-A0B6-01 16 4931821 4931821 G C UBN1 3'UTR 0.29 TCGA-BH-A0B6-01 16 4934664 4934664 G A PPL Missense_Mutation p.S1331F 0.38 deleterious(0.04) benign(0.017) TCGA-BH-A0B6-01 16 53261490 53261490 G C CHD9 Missense_Mutation p.E715Q 0.26 probably_damaging(0.999) TCGA-BH-A0B6-01 16 53635384 53635384 C G RPGRIP1L 3'UTR 0.23 TCGA-BH-A0B6-01 16 57095611 57095611 C G NLRC5 Silent p.L1384L 0.20 TCGA-BH-A0B6-01 16 599151 599151 C T CAPN15 Silent p.F536F 0.27 TCGA-BH-A0B6-01 16 66958816 66958816 C G RRAD Missense_Mutation p.E89D 0.58 tolerated(0.59) benign(0) TCGA-BH-A0B6-01 16 67298294 67298294 G A SLC9A5 Missense_Mutation p.A628T 0.33 tolerated(0.15) benign(0.002) TCGA-BH-A0B6-01 16 67839359 67839359 C T RANBP10 Missense_Mutation p.V107M 0.15 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 16 67865146 67865146 G A CENPT Silent p.L226L 0.11 TCGA-BH-A0B6-01 16 698368 698368 G A FAM195A 3'UTR 0.33 TCGA-BH-A0B6-01 16 70515381 70515381 G A COG4 Silent p.L706L 0.32 TCGA-BH-A0B6-01 16 71967854 71967854 C T RP11-498D10.6 3'Flank 0.32 TCGA-BH-A0B6-01 16 71969322 71969322 C G RP11-498D10.6 3'Flank 0.20 TCGA-BH-A0B6-01 16 731457 731457 G A STUB1 Silent p.E126E 0.17 TCGA-BH-A0B6-01 16 731599 731599 G A STUB1 Missense_Mutation p.E174K 0.15 tolerated(0.12) benign(0.006) TCGA-BH-A0B6-01 16 81061821 81061821 G A CENPN Missense_Mutation p.E286K 0.25 tolerated(0.07) benign(0.158) TCGA-BH-A0B6-01 16 81679139 81679139 G A CMIP Intron 0.38 TCGA-BH-A0B6-01 16 845741 845741 C A CHTF18 Silent p.I744I 0.20 TCGA-BH-A0B6-01 16 85936785 85936785 C A IRF8 Missense_Mutation p.S55Y 0.35 deleterious(0) benign(0.02) TCGA-BH-A0B6-01 16 87442680 87442680 G C ZCCHC14 3'UTR 0.16 TCGA-BH-A0B6-01 16 89614411 89614411 G T SPG7 Missense_Mutation p.G518V 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 16 89940049 89940049 C G TCF25 5'UTR 0.12 TCGA-BH-A0B6-01 17 11958295 11958295 C T MAP2K4 Nonsense_Mutation p.Q69* 0.36 TCGA-BH-A0B6-01 17 15965063 15965063 C T NCOR1 Missense_Mutation p.E1845K 0.15 benign(0.101) TCGA-BH-A0B6-01 17 19677435 19677435 T C ULK2 3'UTR 0.32 TCGA-BH-A0B6-01 17 21731553 21731553 G A UBBP4 Missense_Mutation p.D210N 0.29 deleterious(0.03) benign(0.053) TCGA-BH-A0B6-01 17 27187544 27187544 C T ERAL1 Silent p.I429I 0.12 TCGA-BH-A0B6-01 17 27233073 27233073 C T PHF12 3'UTR 0.10 TCGA-BH-A0B6-01 17 27239657 27239657 C T PHF12 Silent p.K644K 0.17 TCGA-BH-A0B6-01 17 27953525 27953525 C G SSH2 3'UTR 0.12 TCGA-BH-A0B6-01 17 28791716 28791716 G A CPD Missense_Mutation p.E1343K 0.23 deleterious_low_confidence(0.02) benign(0.146) TCGA-BH-A0B6-01 17 34324830 34324830 C T CCL15 Missense_Mutation p.M105I 0.23 tolerated(0.43) benign(0.023) TCGA-BH-A0B6-01 17 3445922 3445922 G A TRPV3 Silent p.I179I 0.09 TCGA-BH-A0B6-01 17 35444078 35444078 C T ACACA 3'UTR 0.17 TCGA-BH-A0B6-01 17 37237288 37237288 G T PLXDC1 Intron 0.44 TCGA-BH-A0B6-01 17 38351319 38351319 G C RAPGEFL1 3'UTR 0.29 TCGA-BH-A0B6-01 17 40714751 40714751 C T COASY Silent p.L66L 0.28 TCGA-BH-A0B6-01 17 40826403 40826403 G A PLEKHH3 Nonsense_Mutation p.Q63* 0.18 TCGA-BH-A0B6-01 17 41342791 41342791 C G NBR1 Silent p.V287V 0.12 TCGA-BH-A0B6-01 17 42170727 42170727 C T HDAC5 Missense_Mutation p.E162K 0.17 deleterious(0.04) probably_damaging(0.969) TCGA-BH-A0B6-01 17 42170740 42170740 C T HDAC5 Silent p.E157E 0.15 TCGA-BH-A0B6-01 17 42194956 42194956 G C HDAC5 5'UTR 0.20 TCGA-BH-A0B6-01 17 45507225 45507225 G A EFCAB13 Missense_Mutation p.D846N 0.25 tolerated(0.1) benign(0.33) TCGA-BH-A0B6-01 17 4576547 4576547 C G PELP1 Missense_Mutation p.E615Q 0.35 possibly_damaging(0.801) TCGA-BH-A0B6-01 17 46863571 46863571 C A TTLL6 Missense_Mutation p.Q572H 0.14 tolerated(0.07) benign(0.052) TCGA-BH-A0B6-01 17 48050219 48050219 G C DLX4 Intron 0.28 TCGA-BH-A0B6-01 17 4848174 4848174 G C RNF167 Missense_Mutation p.E306Q 0.11 deleterious(0) probably_damaging(0.968) TCGA-BH-A0B6-01 17 48828520 48828520 C T LUC7L3 3'UTR 0.17 TCGA-BH-A0B6-01 17 5039177 5039177 C G USP6 Missense_Mutation p.F206L 0.13 deleterious_low_confidence(0) benign(0.418) TCGA-BH-A0B6-01 17 57477031 57477031 G T YPEL2 3'UTR 0.50 TCGA-BH-A0B6-01 17 57477190 57477190 G C YPEL2 3'UTR 0.15 TCGA-BH-A0B6-01 17 57697449 57697449 C T CLTC 5'UTR 0.19 TCGA-BH-A0B6-01 17 59161855 59161855 C T BCAS3 Silent p.V800V 0.13 TCGA-BH-A0B6-01 17 59486381 59486381 C T TBX2 3'UTR 0.20 TCGA-BH-A0B6-01 17 59486686 59486686 C T TBX2 3'UTR 0.30 TCGA-BH-A0B6-01 17 59984890 59984890 C T INTS2 Missense_Mutation p.E362K 0.12 tolerated(0.52) benign(0.085) TCGA-BH-A0B6-01 17 59984941 59984941 G A INTS2 Silent p.L345L 0.25 TCGA-BH-A0B6-01 17 61497523 61497523 G A TANC2 Missense_Mutation p.E1394K 0.17 tolerated(0.67) benign(0.014) TCGA-BH-A0B6-01 17 61514968 61514968 G T CYB561 Intron 0.16 TCGA-BH-A0B6-01 17 61782218 61782218 C T STRADA Intron 0.21 TCGA-BH-A0B6-01 17 62226093 62226093 C T TEX2 3'UTR 0.18 TCGA-BH-A0B6-01 17 62850663 62850663 G A LRRC37A3 3'UTR 0.21 TCGA-BH-A0B6-01 17 62856114 62856114 C G LRRC37A3 Missense_Mutation p.E1384Q 0.15 deleterious(0.01) benign(0.424) TCGA-BH-A0B6-01 17 64187847 64187847 G C CEP112 5'UTR 0.25 TCGA-BH-A0B6-01 17 66985172 66985172 C T ABCA9 Missense_Mutation p.G1348E 0.08 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 17 67297320 67297320 G A ABCA5 Silent p.F409F 0.07 TCGA-BH-A0B6-01 17 71197491 71197491 G C COG1 Missense_Mutation p.A509P 0.11 deleterious(0.03) possibly_damaging(0.728) TCGA-BH-A0B6-01 17 72227061 72227061 G A TTYH2 Missense_Mutation p.E113K 0.32 deleterious(0) probably_damaging(0.984) TCGA-BH-A0B6-01 17 72349061 72349061 G A KIF19 Silent p.Q694Q 0.27 TCGA-BH-A0B6-01 17 72960609 72960609 G A HID1 Missense_Mutation p.S62L 0.31 tolerated(0.16) benign(0.188) TCGA-BH-A0B6-01 17 73821530 73821530 C G UNK 3'UTR 0.17 TCGA-BH-A0B6-01 17 74730487 74730487 C G SRSF2 3'UTR 0.10 TCGA-BH-A0B6-01 17 76047316 76047316 G C TNRC6C Missense_Mutation p.D725H 0.30 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 17 76523036 76523036 G C DNAH17 Missense_Mutation p.Q1184E 0.18 benign(0.01) TCGA-BH-A0B6-01 17 78319813 78319813 C G RNF213 Missense_Mutation p.P2560A 0.09 probably_damaging(0.999) TCGA-BH-A0B6-01 17 78320002 78320002 C G RNF213 Missense_Mutation p.Q2623E 0.10 probably_damaging(0.996) TCGA-BH-A0B6-01 17 78327734 78327734 G C RNF213 Intron 0.11 TCGA-BH-A0B6-01 17 79139785 79139785 G A AATK Missense_Mutation p.S3L 0.32 tolerated(0.08) unknown(0) TCGA-BH-A0B6-01 17 8024239 8024239 G A HES7 3'UTR 0.32 TCGA-BH-A0B6-01 18 10759833 10759833 C G PIEZO2 Silent p.L1150L 0.30 TCGA-BH-A0B6-01 18 19997759 19997759 G A CTAGE1 Missense_Mutation p.H6Y 0.19 deleterious(0) benign(0.284) TCGA-BH-A0B6-01 18 22806869 22806869 C T ZNF521 Missense_Mutation p.C338Y 0.14 tolerated(0.09) possibly_damaging(0.543) TCGA-BH-A0B6-01 18 31324964 31324964 G A ASXL3 Missense_Mutation p.E1718K 0.12 benign(0.154) TCGA-BH-A0B6-01 18 43820137 43820137 G A C18orf25 Silent p.E294E 0.12 TCGA-BH-A0B6-01 18 44259938 44259938 C T ST8SIA5 3'UTR 0.29 TCGA-BH-A0B6-01 18 55398952 55398952 C T ATP8B1 Missense_Mutation p.E30K 0.26 tolerated_low_confidence(0.17) benign(0.37) TCGA-BH-A0B6-01 18 56651821 56651821 C G ZNF532 3'UTR 0.09 TCGA-BH-A0B6-01 18 61585256 61585256 G C SERPINB10 Missense_Mutation p.E98Q 0.14 tolerated(0.08) possibly_damaging(0.732) TCGA-BH-A0B6-01 18 61602231 61602231 C T SERPINB10 Nonsense_Mutation p.Q317* 0.26 TCGA-BH-A0B6-01 18 7038884 7038884 G T LAMA1 Missense_Mutation p.N496K 0.32 deleterious(0) probably_damaging(0.955) TCGA-BH-A0B6-01 18 72343220 72343220 A T ZNF407 Missense_Mutation p.E82V 0.12 tolerated(0.09) possibly_damaging(0.617) TCGA-BH-A0B6-01 18 8813204 8813204 G C SOGA2 Missense_Mutation p.K944N 0.17 tolerated(0.3) benign(0.088) TCGA-BH-A0B6-01 19 11422853 11422853 G T TSPAN16 Missense_Mutation p.Q214H 0.14 deleterious(0) probably_damaging(0.992) TCGA-BH-A0B6-01 19 11446153 11446153 C T RAB3D Missense_Mutation p.E148K 0.11 deleterious(0.02) possibly_damaging(0.503) TCGA-BH-A0B6-01 19 12542336 12542336 C G ZNF443 Missense_Mutation p.R217T 0.14 deleterious(0.01) probably_damaging(1) TCGA-BH-A0B6-01 19 13055117 13055117 G T CALR 3'UTR 0.11 TCGA-BH-A0B6-01 19 13055129 13055129 G A CALR 3'UTR 0.11 TCGA-BH-A0B6-01 19 13059579 13059579 G C RAD23A Silent p.L184L 0.10 TCGA-BH-A0B6-01 19 13363871 13363871 G A CACNA1A Silent p.F1600F 0.20 TCGA-BH-A0B6-01 19 13991286 13991286 C T NANOS3 Missense_Mutation p.S183L 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-BH-A0B6-01 19 13991409 13991409 C T NANOS3 3'Flank 0.24 TCGA-BH-A0B6-01 19 14185330 14185330 C T hsa-mir-1199 Intron 0.17 TCGA-BH-A0B6-01 19 14247274 14247274 C T ASF1B 5'UTR 0.08 TCGA-BH-A0B6-01 19 14513440 14513440 G C CD97 Missense_Mutation p.Q405H 0.09 deleterious(0.02) benign(0.001) TCGA-BH-A0B6-01 19 14583283 14583283 G A PTGER1 3'UTR 0.12 TCGA-BH-A0B6-01 19 14705340 14705340 C A CLEC17A Missense_Mutation p.P97T 0.07 deleterious(0.05) probably_damaging(0.973) TCGA-BH-A0B6-01 19 14939060 14939060 G A OR7A5 5'UTR 0.22 TCGA-BH-A0B6-01 19 15730300 15730300 G C AD000091.2 5'Flank 0.22 TCGA-BH-A0B6-01 19 16033237 16033237 C T CYP4F11 Missense_Mutation p.E308K 0.10 deleterious(0.04) benign(0.309) TCGA-BH-A0B6-01 19 16060034 16060034 C T OR10H4 Silent p.L73L 0.12 TCGA-BH-A0B6-01 19 16301698 16301698 G A FAM32A Missense_Mutation p.D91N 0.17 tolerated(0.09) benign(0.041) TCGA-BH-A0B6-01 19 17169424 17169424 C T HAUS8 Missense_Mutation p.E194K 0.15 tolerated(0.08) possibly_damaging(0.531) TCGA-BH-A0B6-01 19 17212891 17212891 C G MYO9B Missense_Mutation p.H122D 0.25 tolerated(0.07) benign(0.066) TCGA-BH-A0B6-01 19 17641688 17641688 C A FAM129C Silent p.R91R 0.32 TCGA-BH-A0B6-01 19 18977809 18977809 G A UPF1 3'UTR 0.29 TCGA-BH-A0B6-01 19 19822265 19822265 G A ZNF14 Missense_Mutation p.H609Y 0.17 deleterious(0) probably_damaging(0.961) TCGA-BH-A0B6-01 19 21216270 21216270 G A ZNF430 Silent p.L35L 0.24 TCGA-BH-A0B6-01 19 23544105 23544105 G A ZNF91 Missense_Mutation p.S559L 0.11 deleterious(0) probably_damaging(0.992) TCGA-BH-A0B6-01 19 2434442 2434442 C G LMNB2 Missense_Mutation p.K351N 0.20 deleterious(0.03) benign(0.03) TCGA-BH-A0B6-01 19 33131255 33131255 G C ANKRD27 Nonsense_Mutation p.S314* 0.17 TCGA-BH-A0B6-01 19 33131262 33131262 G A ANKRD27 Silent p.L312L 0.16 TCGA-BH-A0B6-01 19 33882362 33882362 G A PEPD Missense_Mutation p.R331C 0.11 tolerated(0.13) benign(0.043) TCGA-BH-A0B6-01 19 35175583 35175583 C A ZNF302 Nonsense_Mutation p.S214* 0.13 TCGA-BH-A0B6-01 19 3551104 3551104 G A MFSD12 Silent p.L129L 0.17 TCGA-BH-A0B6-01 19 3557256 3557256 G A MFSD12 Missense_Mutation p.S49L 0.38 benign(0.225) TCGA-BH-A0B6-01 19 36268731 36268731 C T ARHGAP33 Missense_Mutation p.S37L 0.22 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-BH-A0B6-01 19 36303138 36303138 C T PRODH2 Silent p.L212L 0.16 TCGA-BH-A0B6-01 19 36831803 36831803 C T ZFP14 Missense_Mutation p.E309K 0.07 tolerated(0.17) probably_damaging(0.997) TCGA-BH-A0B6-01 19 37310934 37310934 C T ZNF790 Missense_Mutation p.M104I 0.09 tolerated(0.34) benign(0.004) TCGA-BH-A0B6-01 19 37643096 37643096 G T ZNF585A Missense_Mutation p.Q514K 0.12 deleterious(0.02) benign(0.008) TCGA-BH-A0B6-01 19 38102737 38102737 A G ZNF540 Missense_Mutation p.K186E 0.27 deleterious(0.04) benign(0.001) TCGA-BH-A0B6-01 19 39898893 39898893 C T ZFP36 Missense_Mutation p.P185S 0.10 tolerated(0.19) benign(0.102) TCGA-BH-A0B6-01 19 40354354 40354354 C T FCGBP Missense_Mutation p.C5372Y 0.20 probably_damaging(1) TCGA-BH-A0B6-01 19 41897847 41897847 C T EXOSC5 Missense_Mutation p.E95K 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 19 42392332 42392332 G C ARHGEF1 Missense_Mutation p.E47Q 0.14 tolerated(0.06) possibly_damaging(0.479) TCGA-BH-A0B6-01 19 42848852 42848852 C G MEGF8 Nonsense_Mutation p.S655* 0.21 TCGA-BH-A0B6-01 19 4292732 4292732 G C TMIGD2 Nonsense_Mutation p.S238* 0.21 TCGA-BH-A0B6-01 19 44680727 44680727 C T ZNF226 Nonsense_Mutation p.Q438* 0.32 TCGA-BH-A0B6-01 19 44832181 44832181 G A ZNF112 Missense_Mutation p.S716F 0.17 deleterious(0) possibly_damaging(0.723) TCGA-BH-A0B6-01 19 44934557 44934557 G A ZNF229 Silent p.F133F 0.24 TCGA-BH-A0B6-01 19 45762346 45762346 G A MARK4 Missense_Mutation p.E51K 0.16 deleterious(0) possibly_damaging(0.835) TCGA-BH-A0B6-01 19 46878932 46878932 G C PPP5C Missense_Mutation p.Q145H 0.11 deleterious(0.01) possibly_damaging(0.618) TCGA-BH-A0B6-01 19 48244171 48244171 C T EHD2 Missense_Mutation p.H372Y 0.13 deleterious(0.03) benign(0.285) TCGA-BH-A0B6-01 19 48259788 48259788 G A GLTSCR2 Missense_Mutation p.E434K 0.17 deleterious(0) possibly_damaging(0.899) TCGA-BH-A0B6-01 19 48733895 48733895 C G CARD8 Missense_Mutation p.E279Q 0.10 deleterious(0.03) benign(0.245) TCGA-BH-A0B6-01 19 48866678 48866678 G A TMEM143 Missense_Mutation p.S45L 0.11 deleterious_low_confidence(0.01) benign(0.307) TCGA-BH-A0B6-01 19 48945552 48945552 C G GRIN2D Silent p.V862V 0.18 TCGA-BH-A0B6-01 19 48945555 48945555 C T GRIN2D Silent p.F863F 0.18 TCGA-BH-A0B6-01 19 49309945 49309945 C T BCAT2 Silent p.Q43Q 0.10 TCGA-BH-A0B6-01 19 49652821 49652821 C T PPFIA3 Silent p.F1124F 0.33 TCGA-BH-A0B6-01 19 49657684 49657684 G A HRC Missense_Mutation p.H271Y 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-BH-A0B6-01 19 49952758 49952758 C A PIH1D1 Missense_Mutation p.G104V 0.21 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 19 49954100 49954100 C T PIH1D1 Silent p.S32S 0.35 TCGA-BH-A0B6-01 19 50463852 50463852 C T SIGLEC11 Silent p.V139V 0.09 TCGA-BH-A0B6-01 19 5077436 5077436 C T KDM4B Silent p.L245L 0.21 TCGA-BH-A0B6-01 19 5131263 5131263 G A KDM4B Missense_Mutation p.E498K 0.14 possibly_damaging(0.636) TCGA-BH-A0B6-01 19 51526440 51526440 C G KLK11 Missense_Mutation p.E202Q 0.11 tolerated(0.21) benign(0.029) TCGA-BH-A0B6-01 19 52538020 52538020 G A ZNF432 Silent p.L304L 0.15 TCGA-BH-A0B6-01 19 55246797 55246797 C T KIR3DL3 Missense_Mutation p.L343F 0.13 tolerated(0.13) possibly_damaging(0.67) TCGA-BH-A0B6-01 19 55710008 55710008 C A PTPRH Intron 0.19 TCGA-BH-A0B6-01 19 55857665 55857665 G A SUV420H2 Missense_Mutation p.E219K 0.18 tolerated(0.1) benign(0.011) TCGA-BH-A0B6-01 19 56154541 56154541 G C ZNF580 3'UTR 0.22 TCGA-BH-A0B6-01 19 56466462 56466462 G A NLRP8 Silent p.L346L 0.08 TCGA-BH-A0B6-01 19 56466955 56466955 C A NLRP8 Missense_Mutation p.Q511K 0.16 deleterious(0) probably_damaging(0.994) TCGA-BH-A0B6-01 19 5720747 5720747 C G CATSPERD 5'UTR 0.19 TCGA-BH-A0B6-01 19 57641328 57641328 G C USP29 Missense_Mutation p.E429Q 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-BH-A0B6-01 19 57876444 57876444 G A TRAPPC2P1 Missense_Mutation p.M81I 0.16 tolerated(0.99) benign(0.001) TCGA-BH-A0B6-01 19 57922580 57922580 C T ZNF17 5'UTR 0.20 TCGA-BH-A0B6-01 19 57931119 57931119 G C AC003002.6 Missense_Mutation p.E99Q 0.23 deleterious(0.01) possibly_damaging(0.844) TCGA-BH-A0B6-01 19 57985229 57985229 C T ZNF772 Missense_Mutation p.E295K 0.23 tolerated(0.07) benign(0.034) TCGA-BH-A0B6-01 19 58287980 58287980 C T ZNF586 Nonsense_Mutation p.Q36* 0.25 TCGA-BH-A0B6-01 19 58361742 58361742 C T CTD-2583A14.10 Intron 0.20 TCGA-BH-A0B6-01 19 58563978 58563978 C T ZSCAN1 Missense_Mutation p.R196C 0.08 deleterious(0.04) benign(0) TCGA-BH-A0B6-01 19 58868303 58868303 G A ZNF497 Silent p.F233F 0.16 TCGA-BH-A0B6-01 19 58870325 58870325 C T ZNF497 Intron 0.11 TCGA-BH-A0B6-01 19 58879122 58879122 C T ZNF837 Silent p.G526G 0.24 TCGA-BH-A0B6-01 19 7172440 7172440 G C INSR Missense_Mutation p.L377V 0.25 tolerated(0.08) benign(0.051) TCGA-BH-A0B6-01 19 7626583 7626583 G C PNPLA6 3'UTR 0.23 TCGA-BH-A0B6-01 19 7692692 7692692 C T XAB2 Silent p.V82V 0.30 TCGA-BH-A0B6-01 19 7755420 7755420 C G FCER2 Missense_Mutation p.E165Q 0.16 tolerated(0.08) benign(0.182) TCGA-BH-A0B6-01 19 7937207 7937207 G A CTD-3193O13.9 Missense_Mutation p.S308F 0.09 unknown(0) TCGA-BH-A0B6-01 19 7938167 7938167 G C CTD-3193O13.9 Missense_Mutation p.S97C 0.12 unknown(0) TCGA-BH-A0B6-01 19 7978323 7978323 C T MAP2K7 3'UTR 0.27 TCGA-BH-A0B6-01 19 8130650 8130650 G A FBN3 3'UTR 0.23 TCGA-BH-A0B6-01 19 8130653 8130653 G A FBN3 3'UTR 0.23 TCGA-BH-A0B6-01 19 8190861 8190861 G A FBN3 Silent p.N882N 0.14 TCGA-BH-A0B6-01 19 8321908 8321908 C T CERS4 Missense_Mutation p.R230C 0.07 deleterious(0) probably_damaging(0.996) TCGA-BH-A0B6-01 19 8555614 8555614 C T PRAM1 Silent p.T590T 0.08 TCGA-BH-A0B6-01 19 8575609 8575609 G A ZNF414 Missense_Mutation p.S380L 0.15 tolerated(0.06) benign(0.093) TCGA-BH-A0B6-01 19 9297187 9297187 C G OR7D2 Missense_Mutation p.H244D 0.08 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-BH-A0B6-01 19 9491524 9491524 G C ZNF177 Missense_Mutation p.E173Q 0.11 deleterious(0.02) benign(0.123) TCGA-BH-A0B6-01 19 9721540 9721540 G C ZNF561 Missense_Mutation p.S266C 0.09 tolerated(0.07) probably_damaging(0.997) TCGA-BH-A0B6-01 1 10363814 10363814 C G KIF1B Intron 0.15 TCGA-BH-A0B6-01 1 104114773 104114773 C T AMY2B Silent p.F70F 0.13 TCGA-BH-A0B6-01 1 110466084 110466084 C T CSF1 Missense_Mutation p.R281C 0.10 tolerated(0.17) possibly_damaging(0.809) TCGA-BH-A0B6-01 1 110471624 110471624 C A CSF1 3'UTR 0.12 TCGA-BH-A0B6-01 1 110471931 110471931 C G CSF1 3'UTR 0.15 TCGA-BH-A0B6-01 1 112234037 112234037 C G RAP1A Missense_Mutation p.L19V 0.18 deleterious(0.03) probably_damaging(0.922) TCGA-BH-A0B6-01 1 114308679 114308679 G A RSBN1 Missense_Mutation p.P778S 0.12 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-BH-A0B6-01 1 115267858 115267858 C T CSDE1 Silent p.V625V 0.11 TCGA-BH-A0B6-01 1 116936219 116936219 G A ATP1A1 Missense_Mutation p.E512K 0.15 deleterious(0.01) possibly_damaging(0.524) TCGA-BH-A0B6-01 1 118492688 118492688 C G WDR3 Missense_Mutation p.Q561E 0.10 tolerated(0.31) benign(0.111) TCGA-BH-A0B6-01 1 120935883 120935883 C G FCGR1B Missense_Mutation p.L4F 0.08 tolerated(0.06) benign(0.018) TCGA-BH-A0B6-01 1 12294403 12294403 C G VPS13D Nonsense_Mutation p.S27* 0.18 TCGA-BH-A0B6-01 1 12408918 12408918 G A VPS13D Silent p.V3036V 0.11 TCGA-BH-A0B6-01 1 12837662 12837662 C T PRAMEF12 Missense_Mutation p.R458C 0.34 deleterious(0.03) probably_damaging(0.988) TCGA-BH-A0B6-01 1 1322688 1322688 C T CCNL2 Missense_Mutation p.E496K 0.25 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-BH-A0B6-01 1 13474917 13474917 C T PRAMEF18 Silent p.L404L 0.12 TCGA-BH-A0B6-01 1 144873978 144873978 G A PDE4DIP Missense_Mutation p.S1660L 0.09 tolerated(0.14) benign(0.06) TCGA-BH-A0B6-01 1 145273192 145273192 G C NOTCH2NL Missense_Mutation p.E16Q 0.08 tolerated(0.44) probably_damaging(0.99) TCGA-BH-A0B6-01 1 145791155 145791155 C G GPR89A Silent p.R211R 0.36 TCGA-BH-A0B6-01 1 153043014 153043014 G A SPRR2B 3'UTR 0.08 TCGA-BH-A0B6-01 1 153604099 153604099 C T S100A1 Intron 0.09 TCGA-BH-A0B6-01 1 154155529 154155529 C T TPM3 Intron 0.36 TCGA-BH-A0B6-01 1 1551969 1551969 C T MIB2 Missense_Mutation p.R86W 0.12 tolerated_low_confidence(0.12) benign(0) TCGA-BH-A0B6-01 1 155258262 155258262 G C HCN3 3'UTR 0.30 TCGA-BH-A0B6-01 1 155733174 155733174 G C GON4L Missense_Mutation p.S1552C 0.28 deleterious(0.03) benign(0.085) TCGA-BH-A0B6-01 1 155823271 155823271 G A GON4L Nonsense_Mutation p.Q101* 0.11 TCGA-BH-A0B6-01 1 157646545 157646545 C T FCRL3 3'UTR 0.53 TCGA-BH-A0B6-01 1 159505112 159505112 G C OR10J5 Nonsense_Mutation p.S229* 0.09 TCGA-BH-A0B6-01 1 159888757 159888757 G C TAGLN2 Intron 0.38 TCGA-BH-A0B6-01 1 160183368 160183368 C G PEA15 3'UTR 0.31 TCGA-BH-A0B6-01 1 162351998 162351998 G C C1orf226 Missense_Mutation p.E146Q 0.31 tolerated(0.18) benign(0.161) TCGA-BH-A0B6-01 1 16254693 16254693 G A SPEN Missense_Mutation p.R653Q 0.17 probably_damaging(0.99) TCGA-BH-A0B6-01 1 16254962 16254962 C T SPEN Nonsense_Mutation p.Q743* 0.15 TCGA-BH-A0B6-01 1 16259369 16259369 G A SPEN Missense_Mutation p.E2212K 0.23 probably_damaging(0.991) TCGA-BH-A0B6-01 1 170508668 170508668 C T GORAB Missense_Mutation p.P152S 0.17 tolerated(0.11) benign(0.024) TCGA-BH-A0B6-01 1 17282565 17282565 G A CROCC Missense_Mutation p.E1260K 0.16 probably_damaging(0.984) TCGA-BH-A0B6-01 1 175372702 175372702 C G TNR Missense_Mutation p.E184Q 0.11 tolerated(0.14) benign(0.007) TCGA-BH-A0B6-01 1 180010347 180010347 G C CEP350 Missense_Mutation p.Q1395H 0.35 possibly_damaging(0.687) TCGA-BH-A0B6-01 1 182847159 182847159 G C DHX9 Missense_Mutation p.Q734H 0.13 deleterious(0) probably_damaging(0.979) TCGA-BH-A0B6-01 1 183522252 183522252 C G SMG7 Missense_Mutation p.F1151L 0.44 unknown(0) TCGA-BH-A0B6-01 1 184042664 184042664 G C TSEN15 3'UTR 0.28 TCGA-BH-A0B6-01 1 184589606 184589606 G A C1orf21 3'UTR 0.47 TCGA-BH-A0B6-01 1 184590043 184590043 G A C1orf21 3'UTR 0.30 TCGA-BH-A0B6-01 1 184662133 184662133 G C EDEM3 3'UTR 0.40 TCGA-BH-A0B6-01 1 185947054 185947054 C G HMCN1 Nonsense_Mutation p.S836* 0.11 TCGA-BH-A0B6-01 1 186325574 186325574 C G TPR Missense_Mutation p.E578Q 0.24 benign(0.403) TCGA-BH-A0B6-01 1 19454188 19454188 G C UBR4 Missense_Mutation p.L3053V 0.12 probably_damaging(0.977) TCGA-BH-A0B6-01 1 196709772 196709772 G A CFH Missense_Mutation p.E936K 0.46 tolerated(0.81) benign(0.004) TCGA-BH-A0B6-01 1 202573742 202573742 G A SYT2 Silent p.P62P 0.26 TCGA-BH-A0B6-01 1 204218089 204218089 C T PLEKHA6 Missense_Mutation p.E562K 0.08 deleterious(0) probably_damaging(0.99) TCGA-BH-A0B6-01 1 204228735 204228735 C A PLEKHA6 Nonsense_Mutation p.E220* 0.35 TCGA-BH-A0B6-01 1 205627918 205627918 G C SLC45A3 3'UTR 0.30 TCGA-BH-A0B6-01 1 206635845 206635845 C A SRGAP2 3'UTR 0.47 TCGA-BH-A0B6-01 1 207286436 207286436 C T C4BPA Silent p.F22F 0.52 TCGA-BH-A0B6-01 1 207648450 207648450 G C CR2 Missense_Mutation p.D869H 0.38 deleterious(0.04) probably_damaging(0.987) TCGA-BH-A0B6-01 1 210637917 210637917 C G HHAT Missense_Mutation p.L310V 0.08 deleterious(0.02) possibly_damaging(0.756) TCGA-BH-A0B6-01 1 211192256 211192256 G A KCNH1 Silent p.L301L 0.08 TCGA-BH-A0B6-01 1 21133493 21133493 C A EIF4G3 3'UTR 0.13 TCGA-BH-A0B6-01 1 21190980 21190980 C G EIF4G3 Missense_Mutation p.E949Q 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 1 21586797 21586797 G A ECE1 Silent p.L194L 0.13 TCGA-BH-A0B6-01 1 215963505 215963505 C T USH2A Missense_Mutation p.E3360K 0.53 benign(0.206) TCGA-BH-A0B6-01 1 216680404 216680404 C T ESRRG Silent p.L430L 0.30 TCGA-BH-A0B6-01 1 21880494 21880494 G A ALPL 5'UTR 0.30 TCGA-BH-A0B6-01 1 220335565 220335565 G A RAB3GAP2 Missense_Mutation p.S1067F 0.26 deleterious(0) probably_damaging(0.982) TCGA-BH-A0B6-01 1 22188305 22188305 C T HSPG2 Missense_Mutation p.G1634S 0.27 benign(0.093) TCGA-BH-A0B6-01 1 2236018 2236018 C T SKI Silent p.L587L 0.15 TCGA-BH-A0B6-01 1 224345619 224345619 G C FBXO28 3'UTR 0.37 TCGA-BH-A0B6-01 1 226043629 226043629 G - TMEM63A Frame_Shift_Del p.F529Sfs*29 0.08 TCGA-BH-A0B6-01 1 226044358 226044358 G A TMEM63A Silent p.L522L 0.09 TCGA-BH-A0B6-01 1 226353669 226353669 C T ACBD3 Missense_Mutation p.E107K 0.26 tolerated(0.06) possibly_damaging(0.621) TCGA-BH-A0B6-01 1 228248521 228248521 C T WNT3A 3'UTR 0.50 TCGA-BH-A0B6-01 1 23111289 23111289 C T EPHB2 Silent p.A177A 0.29 TCGA-BH-A0B6-01 1 233507943 233507943 G A MLK4 Intron 0.38 TCGA-BH-A0B6-01 1 235909789 235909789 G A LYST Silent p.L2607L 0.41 TCGA-BH-A0B6-01 1 23687831 23687831 C T ZNF436 3'UTR 0.09 TCGA-BH-A0B6-01 1 23696740 23696740 G A C1orf213 3'UTR 0.14 TCGA-BH-A0B6-01 1 243336104 243336104 G C CEP170 Missense_Mutation p.I537M 0.08 deleterious(0.01) possibly_damaging(0.822) TCGA-BH-A0B6-01 1 247014738 247014738 C T AHCTF1 Missense_Mutation p.E1533K 0.09 deleterious(0.02) possibly_damaging(0.843) TCGA-BH-A0B6-01 1 247464343 247464343 G T ZNF496 Silent p.I414I 0.18 TCGA-BH-A0B6-01 1 248202608 248202608 G A OR2L13 Intron 0.17 TCGA-BH-A0B6-01 1 248685614 248685614 C G OR2G6 Missense_Mutation p.Q223E 0.12 deleterious(0.01) benign(0.052) TCGA-BH-A0B6-01 1 24977977 24977977 C G SRRM1 Missense_Mutation p.S200C 0.24 benign(0.184) TCGA-BH-A0B6-01 1 24981345 24981345 G A SRRM1 Splice_Site p.X347_splice 0.19 TCGA-BH-A0B6-01 1 26158870 26158870 C T MTFR1L 3'UTR 0.36 TCGA-BH-A0B6-01 1 26655357 26655357 G C AIM1L Nonsense_Mutation p.S567* 0.14 TCGA-BH-A0B6-01 1 27327090 27327090 G C TRNP1 3'UTR 0.30 TCGA-BH-A0B6-01 1 27995840 27995840 C T IFI6 5'UTR 0.24 TCGA-BH-A0B6-01 1 31896623 31896623 C G SERINC2 Missense_Mutation p.I50M 0.14 tolerated(0.48) possibly_damaging(0.615) TCGA-BH-A0B6-01 1 31896632 31896632 C T SERINC2 Silent p.F53F 0.13 TCGA-BH-A0B6-01 1 32707117 32707117 G A MTMR9LP RNA 0.14 TCGA-BH-A0B6-01 1 33321706 33321706 C G S100PBP 3'UTR 0.29 TCGA-BH-A0B6-01 1 33585656 33585656 G A ADC Missense_Mutation p.R419Q 0.09 tolerated(1) benign(0.001) TCGA-BH-A0B6-01 1 35227498 35227498 G A GJB4 Missense_Mutation p.E215K 0.13 tolerated(0.68) benign(0.008) TCGA-BH-A0B6-01 1 35863124 35863124 G A ZMYM4 Silent p.E1059E 0.15 TCGA-BH-A0B6-01 1 3703586 3703586 C T LRRC47 Missense_Mutation p.G302R 0.11 tolerated(0.27) benign(0.07) TCGA-BH-A0B6-01 1 38171204 38171204 G C CDCA8 Missense_Mutation p.E226Q 0.13 deleterious(0.01) possibly_damaging(0.868) TCGA-BH-A0B6-01 1 39311645 39311645 G C RRAGC Silent p.V338V 0.15 TCGA-BH-A0B6-01 1 39823290 39823290 G C MACF1 Missense_Mutation p.E1828Q 0.16 benign(0.023) TCGA-BH-A0B6-01 1 41086701 41086701 C G RIMS3 3'UTR 0.36 TCGA-BH-A0B6-01 1 41157502 41157502 G A NFYC 5'UTR 0.30 TCGA-BH-A0B6-01 1 41300651 41300651 C T KCNQ4 Silent p.F542F 0.13 TCGA-BH-A0B6-01 1 42047350 42047350 C G HIVEP3 Missense_Mutation p.R1040T 0.18 probably_damaging(0.996) TCGA-BH-A0B6-01 1 43891809 43891809 C G SZT2 Silent p.L1010L 0.08 TCGA-BH-A0B6-01 1 43893678 43893678 C G SZT2 Missense_Mutation p.Q1213E 0.13 tolerated(0.87) benign(0.011) TCGA-BH-A0B6-01 1 43896169 43896169 G C SZT2 Missense_Mutation p.D1438H 0.13 deleterious(0.02) probably_damaging(0.914) TCGA-BH-A0B6-01 1 45250338 45250338 G A BEST4 Silent p.L371L 0.21 TCGA-BH-A0B6-01 1 45289025 45289025 C T PTCH2 Silent p.L1049L 0.17 TCGA-BH-A0B6-01 1 46807666 46807666 C T NSUN4 Intron 0.11 TCGA-BH-A0B6-01 1 47284405 47284405 C G CYP4B1 Missense_Mutation p.I486M 0.19 tolerated(0.07) possibly_damaging(0.6) TCGA-BH-A0B6-01 1 47746630 47746630 C T STIL Silent p.L500L 0.22 TCGA-BH-A0B6-01 1 48865165 48865165 G C SPATA6 Nonsense_Mutation p.S213* 0.08 TCGA-BH-A0B6-01 1 49201913 49201913 C G BEND5 Missense_Mutation p.R369T 0.13 deleterious(0.01) benign(0.101) TCGA-BH-A0B6-01 1 50661270 50661270 G C ELAVL4 Missense_Mutation p.K199N 0.11 deleterious(0.01) benign(0.2) TCGA-BH-A0B6-01 1 52704461 52704461 G A ZFYVE9 Missense_Mutation p.E458K 0.10 deleterious_low_confidence(0.03) benign(0.008) TCGA-BH-A0B6-01 1 59142677 59142677 C T MYSM1 Silent p.L437L 0.13 TCGA-BH-A0B6-01 1 6194863 6194863 C T CHD5 Missense_Mutation p.G976D 0.26 deleterious(0) probably_damaging(0.998) TCGA-BH-A0B6-01 1 66829094 66829094 G C PDE4B Missense_Mutation p.R375T 0.14 deleterious(0) probably_damaging(0.992) TCGA-BH-A0B6-01 1 68564475 68564475 C A WLS Intron 0.58 TCGA-BH-A0B6-01 1 82456098 82456098 G A LPHN2 Missense_Mutation p.D1161N 0.21 deleterious(0.02) probably_damaging(0.928) TCGA-BH-A0B6-01 1 84702315 84702315 G A PRKACB 3'UTR 0.15 TCGA-BH-A0B6-01 1 85784437 85784437 C G DDAH1 3'UTR 0.24 TCGA-BH-A0B6-01 1 981250 981250 G A AGRN Missense_Mutation p.E892K 0.22 deleterious(0.01) possibly_damaging(0.621) TCGA-BH-A0B6-01 20 1294005 1294005 C T SDCBP2 Silent p.L121L 0.08 TCGA-BH-A0B6-01 20 18297346 18297346 C G ZNF133 Silent p.L616L 0.28 TCGA-BH-A0B6-01 20 20026011 20026011 C T CRNKL1 Missense_Mutation p.E409K 0.17 tolerated(0.08) benign(0.058) TCGA-BH-A0B6-01 20 20373733 20373733 C T RALGAPA2 3'UTR 0.13 TCGA-BH-A0B6-01 20 2125277 2125277 G C STK35 3'UTR 0.14 TCGA-BH-A0B6-01 20 25448084 25448084 C T NINL Missense_Mutation p.E1122K 0.12 deleterious(0.02) benign(0.172) TCGA-BH-A0B6-01 20 309837 309837 G C SOX12 3'UTR 0.08 TCGA-BH-A0B6-01 20 310612 310612 G T SOX12 3'UTR 0.12 TCGA-BH-A0B6-01 20 3218736 3218736 G A SLC4A11 5'UTR 0.16 TCGA-BH-A0B6-01 20 33037238 33037238 C T ITCH Missense_Mutation p.S429L 0.11 tolerated(0.27) benign(0.009) TCGA-BH-A0B6-01 20 33329790 33329790 C T NCOA6 Missense_Mutation p.D1424N 0.25 benign(0.161) TCGA-BH-A0B6-01 20 33703578 33703578 G A EDEM2 Silent p.I465I 0.09 TCGA-BH-A0B6-01 20 33875226 33875226 G A FAM83C Silent p.L452L 0.18 TCGA-BH-A0B6-01 20 36032156 36032156 C T SRC 3'UTR 0.10 TCGA-BH-A0B6-01 20 3629093 3629093 G T ATRN 3'UTR 0.09 TCGA-BH-A0B6-01 20 36431299 36431299 G T CTNNBL1 Silent p.L354L 0.30 TCGA-BH-A0B6-01 20 3686615 3686615 G A SIGLEC1 Missense_Mutation p.S161F 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 20 37150316 37150316 G A RALGAPB Missense_Mutation p.E532K 0.17 deleterious(0.01) benign(0.22) TCGA-BH-A0B6-01 20 37353306 37353306 C T SLC32A1 5'UTR 0.07 TCGA-BH-A0B6-01 20 3802782 3802782 C T AP5S1 Silent p.L6L 0.14 TCGA-BH-A0B6-01 20 42089630 42089630 G C SRSF6 Missense_Mutation p.R321T 0.21 tolerated_low_confidence(0.12) unknown(0) TCGA-BH-A0B6-01 20 43559250 43559250 G A PABPC1L Silent p.R374R 0.17 TCGA-BH-A0B6-01 20 44695740 44695740 C T NCOA5 Missense_Mutation p.E195K 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-BH-A0B6-01 20 47862923 47862923 C G ZNFX1 3'UTR 0.11 TCGA-BH-A0B6-01 20 50140431 50140431 G C NFATC2 Missense_Mutation p.P117A 0.11 tolerated(0.11) possibly_damaging(0.521) TCGA-BH-A0B6-01 20 55092222 55092222 G C RTFDC1 Missense_Mutation p.R236T 0.12 tolerated(0.61) benign(0.01) TCGA-BH-A0B6-01 20 60528681 60528681 A G MIR1257 RNA 0.11 TCGA-BH-A0B6-01 20 60892512 60892512 G A LAMA5 Missense_Mutation p.P2467L 0.27 benign(0.011) TCGA-BH-A0B6-01 20 61572857 61572857 G A GID8 Translation_Start_Site p.M1? 0.11 deleterious(0.02) benign(0.237) TCGA-BH-A0B6-01 20 62421190 62421190 G A ZBTB46 Silent p.F307F 0.20 TCGA-BH-A0B6-01 20 62588862 62588862 G A ZNF512B 3'UTR 0.19 TCGA-BH-A0B6-01 20 62679722 62679722 G A SOX18 Silent p.L318L 0.19 TCGA-BH-A0B6-01 20 8130970 8130970 G A PLCB1 Silent p.L43L 0.11 TCGA-BH-A0B6-01 20 865884 865884 C G ANGPT4 Silent p.L224L 0.18 TCGA-BH-A0B6-01 21 17250997 17250997 C T USP25 3'UTR 0.33 TCGA-BH-A0B6-01 21 27141975 27141975 G A GABPA 3'UTR 0.18 TCGA-BH-A0B6-01 21 30302750 30302750 C A LTN1 3'UTR 0.09 TCGA-BH-A0B6-01 21 30717315 30717315 C G BACH1 3'UTR 0.16 TCGA-BH-A0B6-01 21 32492000 32492000 C G TIAM1 3'UTR 0.15 TCGA-BH-A0B6-01 21 34954336 34954336 C T DONSON Missense_Mutation p.E358K 0.13 tolerated(0.05) benign(0.382) TCGA-BH-A0B6-01 21 35172111 35172111 G A ITSN1 Splice_Site p.X728_splice 0.20 TCGA-BH-A0B6-01 21 35470335 35470335 G A SLC5A3 3'UTR 0.19 TCGA-BH-A0B6-01 21 37571491 37571491 G C DOPEY2 Missense_Mutation p.E88Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 21 40720491 40720491 C T HMGN1 Missense_Mutation p.E10K 0.47 tolerated(0.19) benign(0.003) TCGA-BH-A0B6-01 21 41496179 41496179 G A DSCAM Silent p.L1213L 0.17 TCGA-BH-A0B6-01 21 41648112 41648112 G A DSCAM Silent p.V756V 0.10 TCGA-BH-A0B6-01 21 42812922 42812922 G T MX1 Nonsense_Mutation p.E234* 0.15 TCGA-BH-A0B6-01 21 43714663 43714663 C T ABCG1 Silent p.F567F 0.24 TCGA-BH-A0B6-01 21 45825030 45825030 C T TRPM2 Silent p.F848F 0.07 TCGA-BH-A0B6-01 21 45825917 45825917 G C TRPM2 Silent p.R929R 0.22 TCGA-BH-A0B6-01 21 45999959 45999959 G A KRTAP10-5 Missense_Mutation p.S166F 0.20 deleterious(0.01) unknown(0) TCGA-BH-A0B6-01 21 46000241 46000241 G A KRTAP10-5 Missense_Mutation p.S72L 0.18 tolerated(0.06) unknown(0) TCGA-BH-A0B6-01 21 47686981 47686981 C T MCM3AP Missense_Mutation p.D902N 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-BH-A0B6-01 21 47687012 47687012 C T MCM3AP Silent p.V891V 0.28 TCGA-BH-A0B6-01 21 47766851 47766851 C T PCNT Silent p.L305L 0.17 TCGA-BH-A0B6-01 21 48071892 48071892 C G PRMT2 Intron 0.23 TCGA-BH-A0B6-01 22 17589234 17589234 G A IL17RA Silent p.L375L 0.26 TCGA-BH-A0B6-01 22 18301756 18301756 C G MICAL3 Missense_Mutation p.R1224P 0.15 possibly_damaging(0.669) TCGA-BH-A0B6-01 22 21380774 21380774 A T P2RX6 Silent p.R398R 0.14 TCGA-BH-A0B6-01 22 21801527 21801527 G A HIC2 3'UTR 0.28 TCGA-BH-A0B6-01 22 21802244 21802244 G A HIC2 3'UTR 0.17 TCGA-BH-A0B6-01 22 29191049 29191049 C G XBP1 3'UTR 0.12 TCGA-BH-A0B6-01 22 29661465 29661465 C A RHBDD3 Intron 0.12 TCGA-BH-A0B6-01 22 29885286 29885286 C T NEFH Missense_Mutation p.P553S 0.45 deleterious(0.01) unknown(0) TCGA-BH-A0B6-01 22 30163496 30163496 G A UQCR10 Missense_Mutation p.D37N 0.30 tolerated(0.06) probably_damaging(0.983) TCGA-BH-A0B6-01 22 31302769 31302769 A G OSBP2 3'UTR 0.12 TCGA-BH-A0B6-01 22 33260985 33260985 G A SYN3 Nonsense_Mutation p.Q210* 0.36 TCGA-BH-A0B6-01 22 38122318 38122318 C T TRIOBP Missense_Mutation p.S1252F 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BH-A0B6-01 22 40085578 40085578 C G CACNA1I 3'UTR 0.30 TCGA-BH-A0B6-01 22 43623467 43623467 C T SCUBE1 Missense_Mutation p.D374N 0.18 tolerated(0.06) benign(0.039) TCGA-BH-A0B6-01 22 46739244 46739244 C T TRMU Missense_Mutation p.H112Y 0.12 deleterious(0.02) possibly_damaging(0.507) TCGA-BH-A0B6-01 22 46742358 46742358 C T TRMU Missense_Mutation p.S132F 0.22 deleterious(0) probably_damaging(0.995) TCGA-BH-A0B6-01 22 46746201 46746201 C T TRMU Silent p.L164L 0.16 TCGA-BH-A0B6-01 22 46758515 46758515 C T CELSR1 3'UTR 0.27 TCGA-BH-A0B6-01 22 46760568 46760568 C T CELSR1 Missense_Mutation p.E2874K 0.12 deleterious(0.04) possibly_damaging(0.766) TCGA-BH-A0B6-01 22 50684419 50684419 G C HDAC10 Missense_Mutation p.L585V 0.27 tolerated(0.13) probably_damaging(0.997) TCGA-BH-A0B6-01 2 102038224 102038224 C A RFX8 Missense_Mutation p.D67Y 0.17 deleterious(0) probably_damaging(0.967) TCGA-BH-A0B6-01 2 102091110 102091110 C G RFX8 5'UTR 0.23 TCGA-BH-A0B6-01 2 102450874 102450874 G A MAP4K4 Missense_Mutation p.D215N 0.09 deleterious_low_confidence(0) unknown(0) TCGA-BH-A0B6-01 2 102851551 102851551 C T IL1RL2 Missense_Mutation p.P498S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-BH-A0B6-01 2 106713195 106713195 C T UXS1 Silent p.L375L 0.21 TCGA-BH-A0B6-01 2 109403242 109403242 G C CCDC138 5'UTR 0.09 TCGA-BH-A0B6-01 2 122493199 122493199 C G NIFK Missense_Mutation p.R78T 0.29 deleterious(0) probably_damaging(0.98) TCGA-BH-A0B6-01 2 128047295 128047295 G T ERCC3 Silent p.L209L 0.23 TCGA-BH-A0B6-01 2 133174577 133174577 G A GPR39 5'UTR 0.10 TCGA-BH-A0B6-01 2 135714360 135714360 G C CCNT2 3'UTR 0.38 TCGA-BH-A0B6-01 2 136700965 136700965 C G DARS Missense_Mutation p.E136Q 0.26 deleterious(0) probably_damaging(0.986) TCGA-BH-A0B6-01 2 163241399 163241399 G A KCNH7 Nonsense_Mutation p.Q921* 0.10 TCGA-BH-A0B6-01 2 167266302 167266302 C G SCN7A Missense_Mutation p.W1285C 0.29 tolerated(0.2) possibly_damaging(0.663) TCGA-BH-A0B6-01 2 168994617 168994617 G A STK39 Nonsense_Mutation p.Q319* 0.18 TCGA-BH-A0B6-01 2 169020359 169020359 G C STK39 Silent p.V154V 0.21 TCGA-BH-A0B6-01 2 170147508 170147508 C T LRP2 Splice_Site p.X257_splice 0.11 TCGA-BH-A0B6-01 2 172641902 172641902 C T SLC25A12 Missense_Mutation p.R640K 0.30 tolerated(0.28) benign(0.014) TCGA-BH-A0B6-01 2 173335758 173335758 G A ITGA6 Missense_Mutation p.D234N 0.12 deleterious(0.01) possibly_damaging(0.499) TCGA-BH-A0B6-01 2 175664667 175664667 C T CHN1 3'UTR 0.28 TCGA-BH-A0B6-01 2 178490945 178490945 C T PDE11A 3'UTR 0.29 TCGA-BH-A0B6-01 2 179448568 179448568 G C TTN Missense_Mutation p.P21781A 0.15 TCGA-BH-A0B6-01 2 179560075 179560075 C T TTN Missense_Mutation p.V10424I 0.11 TCGA-BH-A0B6-01 2 179605520 179605520 G A TTN Missense_Mutation p.S4147F 0.22 TCGA-BH-A0B6-01 2 179612117 179612117 C T TTN Intron 0.21 TCGA-BH-A0B6-01 2 179612529 179612529 C G TTN Intron 0.19 TCGA-BH-A0B6-01 2 17962027 17962027 A C GEN1 Silent p.T516T 0.26 TCGA-BH-A0B6-01 2 188361632 188361632 C G TFPI Missense_Mutation p.E99Q 0.18 deleterious(0.03) probably_damaging(0.982) TCGA-BH-A0B6-01 2 192711414 192711414 C T SDPR Missense_Mutation p.E80K 0.30 deleterious(0) probably_damaging(0.99) TCGA-BH-A0B6-01 2 192711603 192711603 C G SDPR Missense_Mutation p.D17H 0.30 tolerated_low_confidence(0.17) possibly_damaging(0.519) TCGA-BH-A0B6-01 2 196642548 196642548 G A DNAH7 Silent p.I3680I 0.20 TCGA-BH-A0B6-01 2 196834702 196834702 C T DNAH7 Silent p.L725L 0.22 TCGA-BH-A0B6-01 2 198436972 198436972 G C RFTN2 Missense_Mutation p.D422E 0.07 tolerated(1) benign(0.03) TCGA-BH-A0B6-01 2 202265750 202265750 G A TRAK2 Silent p.L118L 0.13 TCGA-BH-A0B6-01 2 202899454 202899454 G A FZD7 Silent p.A28A 0.29 TCGA-BH-A0B6-01 2 202899764 202899764 G A FZD7 Missense_Mutation p.E132K 0.09 tolerated(0.06) possibly_damaging(0.903) TCGA-BH-A0B6-01 2 203421186 203421186 G A BMPR2 Missense_Mutation p.R933K 0.13 tolerated(0.13) benign(0.008) TCGA-BH-A0B6-01 2 207619836 207619836 C T MDH1B Missense_Mutation p.M269I 0.14 tolerated(0.39) benign(0.002) TCGA-BH-A0B6-01 2 20818493 20818493 C T HS1BP3 3'UTR 0.17 TCGA-BH-A0B6-01 2 210798713 210798713 G A UNC80 Silent p.V1988V 0.27 TCGA-BH-A0B6-01 2 219227619 219227619 G A C2orf62 Silent p.L208L 0.11 TCGA-BH-A0B6-01 2 220406397 220406397 C T CHPF Missense_Mutation p.E277K 0.10 tolerated(0.13) possibly_damaging(0.581) TCGA-BH-A0B6-01 2 222307703 222307703 G C EPHA4 Silent p.L640L 0.17 TCGA-BH-A0B6-01 2 225346783 225346783 C G CUL3 Missense_Mutation p.E619Q 0.25 tolerated(0.18) possibly_damaging(0.718) TCGA-BH-A0B6-01 2 227663091 227663091 C A IRS1 Missense_Mutation p.D122Y 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A0B6-01 2 228767739 228767739 C T DAW1 Nonsense_Mutation p.Q188* 0.17 TCGA-BH-A0B6-01 2 238290024 238290024 G A COL6A3 Silent p.I477I 0.18 TCGA-BH-A0B6-01 2 239059479 239059479 G A KLHL30 Missense_Mutation p.E504K 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-BH-A0B6-01 2 242176096 242176096 C A HDLBP Missense_Mutation p.R946S 0.14 tolerated(0.26) benign(0.03) TCGA-BH-A0B6-01 2 242752481 242752481 G T NEU4 5'UTR 0.14 TCGA-BH-A0B6-01 2 25042510 25042510 C T CENPO 3'UTR 0.14 TCGA-BH-A0B6-01 2 25044484 25044484 C G ADCY3 Missense_Mutation p.W1010S 0.29 deleterious(0) possibly_damaging(0.557) TCGA-BH-A0B6-01 2 25167482 25167482 C G DNAJC27 3'UTR 0.12 TCGA-BH-A0B6-01 2 25990551 25990551 G C ASXL2 Missense_Mutation p.Q226E 0.11 deleterious(0.04) benign(0.214) TCGA-BH-A0B6-01 2 26257106 26257106 C T RAB10 5'UTR 0.15 TCGA-BH-A0B6-01 2 27303691 27303691 G C EMILIN1 Missense_Mutation p.D128H 0.14 probably_damaging(0.996) TCGA-BH-A0B6-01 2 31165121 31165121 C G GALNT14 Missense_Mutation p.D298H 0.18 tolerated(0.06) possibly_damaging(0.48) TCGA-BH-A0B6-01 2 37247806 37247806 G A HEATR5B Nonsense_Mutation p.Q1343* 0.31 TCGA-BH-A0B6-01 2 40340994 40340994 C T SLC8A1 3'Flank 0.10 TCGA-BH-A0B6-01 2 43926827 43926827 G A PLEKHH2 Missense_Mutation p.E244K 0.19 tolerated_low_confidence(0.17) benign(0.008) TCGA-BH-A0B6-01 2 45645601 45645601 C T SRBD1 Missense_Mutation p.E746K 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-BH-A0B6-01 2 48028099 48028099 G A MSH6 Missense_Mutation p.E993K 0.20 tolerated(0.14) probably_damaging(0.998) TCGA-BH-A0B6-01 2 61324976 61324976 C T KIAA1841 Nonsense_Mutation p.Q452* 0.08 TCGA-BH-A0B6-01 2 70524439 70524439 G C FAM136A Silent p.L133L 0.11 TCGA-BH-A0B6-01 2 74784118 74784118 C T DOK1 Silent p.I441I 0.30 TCGA-BH-A0B6-01 2 75157707 75157707 C T AC104135.3 RNA 0.20 TCGA-BH-A0B6-01 2 84880565 84880565 G T DNAH6 Missense_Mutation p.R1734I 0.10 tolerated(0.28) benign(0.004) TCGA-BH-A0B6-01 2 86993036 86993036 C T RMND5A Missense_Mutation p.S248L 0.15 deleterious(0.03) probably_damaging(0.977) TCGA-BH-A0B6-01 2 87755158 87755158 C T LINC00152 RNA 0.08 TCGA-BH-A0B6-01 2 90109020 90109020 C T IGKV6D-41 Silent p.I95I 0.13 TCGA-BH-A0B6-01 2 96051535 96051535 C G KCNIP3 3'UTR 0.23 TCGA-BH-A0B6-01 2 96874573 96874573 G A STARD7 5'Flank 0.29 TCGA-BH-A0B6-01 2 97035233 97035233 G A NCAPH Missense_Mutation p.E721K 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 2 97370228 97370228 C G LMAN2L 3'Flank 0.12 TCGA-BH-A0B6-01 2 98340802 98340802 G A ZAP70 Silent p.P101P 0.17 TCGA-BH-A0B6-01 2 98737772 98737772 G C VWA3B Missense_Mutation p.E185Q 0.16 tolerated(0.24) benign(0.081) TCGA-BH-A0B6-01 2 99758023 99758023 C G C2ORF15 5'UTR 0.15 TCGA-BH-A0B6-01 3 100949878 100949878 G C IMPG2 Missense_Mutation p.I1115M 0.12 deleterious(0) benign(0.045) TCGA-BH-A0B6-01 3 108081291 108081291 G C HHLA2 Missense_Mutation p.R369T 0.23 tolerated_low_confidence(0.25) benign(0) TCGA-BH-A0B6-01 3 108118005 108118005 C T MYH15 Missense_Mutation p.E1636K 0.09 deleterious(0) possibly_damaging(0.747) TCGA-BH-A0B6-01 3 111261048 111261048 G A CD96 5'UTR 0.21 TCGA-BH-A0B6-01 3 111785247 111785247 C T TMPRSS7 Nonsense_Mutation p.Q396* 0.31 TCGA-BH-A0B6-01 3 113004354 113004354 G A BOC Silent p.V1033V 0.08 TCGA-BH-A0B6-01 3 113858382 113858382 G C DRD3 Missense_Mutation p.Q230E 0.09 tolerated(0.86) benign(0.199) TCGA-BH-A0B6-01 3 118937545 118937545 G C B4GALT4 Missense_Mutation p.S250C 0.27 deleterious(0) probably_damaging(0.981) TCGA-BH-A0B6-01 3 119535970 119535970 C T NR1I2 Nonsense_Mutation p.Q445* 0.20 TCGA-BH-A0B6-01 3 121217467 121217467 G A POLQ Silent p.F670F 0.16 TCGA-BH-A0B6-01 3 121304892 121304892 C G ARGFX Missense_Mutation p.F131L 0.23 tolerated(0.23) possibly_damaging(0.525) TCGA-BH-A0B6-01 3 121555595 121555595 C G EAF2 Intron 0.35 TCGA-BH-A0B6-01 3 122134854 122134854 G A WDR5B 5'UTR 0.24 TCGA-BH-A0B6-01 3 126722189 126722189 C T PLXNA1 Missense_Mutation p.S465L 0.22 tolerated(0.31) benign(0.004) TCGA-BH-A0B6-01 3 128810100 128810100 C G RAB43 Missense_Mutation p.E160Q 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 3 129824435 129824435 C T FAM86HP RNA 0.35 TCGA-BH-A0B6-01 3 133651651 133651651 C G SLCO2A1 3'UTR 0.20 TCGA-BH-A0B6-01 3 137729229 137729229 G A CLDN18 Silent p.V54V 0.24 TCGA-BH-A0B6-01 3 137783497 137783497 C A DZIP1L Missense_Mutation p.R705S 0.10 tolerated(0.2) benign(0.012) TCGA-BH-A0B6-01 3 139258473 139258473 G A RBP1 Missense_Mutation p.R30W 0.15 deleterious_low_confidence(0) benign(0.14) TCGA-BH-A0B6-01 3 142231157 142231157 C G ATR Silent p.L1599L 0.16 TCGA-BH-A0B6-01 3 143708943 143708943 G C C3orf58 3'UTR 0.19 TCGA-BH-A0B6-01 3 14731594 14731594 C G C3orf20 Missense_Mutation p.S239C 0.08 deleterious(0.04) benign(0.379) TCGA-BH-A0B6-01 3 15211962 15211962 G A COL6A4P1 RNA 0.14 TCGA-BH-A0B6-01 3 153840606 153840606 C A ARHGEF26 Silent p.L275L 0.14 TCGA-BH-A0B6-01 3 154042066 154042066 C T DHX36 Missense_Mutation p.R47Q 0.21 tolerated(0.59) benign(0.238) TCGA-BH-A0B6-01 3 154147435 154147435 C G GPR149 5'UTR 0.08 TCGA-BH-A0B6-01 3 15749438 15749438 C A ANKRD28 Missense_Mutation p.D484Y 0.14 tolerated(0.34) benign(0.301) TCGA-BH-A0B6-01 3 160167520 160167520 G C TRIM59 5'UTR 0.17 TCGA-BH-A0B6-01 3 169539937 169539937 C G LRRIQ4 Silent p.L76L 0.16 TCGA-BH-A0B6-01 3 169540268 169540268 C T LRRIQ4 Missense_Mutation p.L187F 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-BH-A0B6-01 3 169540270 169540270 C T LRRIQ4 Silent p.L187L 0.14 TCGA-BH-A0B6-01 3 169540357 169540357 C G LRRIQ4 Missense_Mutation p.F216L 0.16 tolerated(1) benign(0.028) TCGA-BH-A0B6-01 3 169569529 169569529 G A LRRC31 Missense_Mutation p.S346L 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 3 170584177 170584177 C G RPL22L1 Missense_Mutation p.E121Q 0.29 deleterious(0) unknown(0) TCGA-BH-A0B6-01 3 172116117 172116117 G A FNDC3B 3'UTR 0.17 TCGA-BH-A0B6-01 3 172478015 172478015 C G ECT2 Missense_Mutation p.H216D 0.14 deleterious(0) probably_damaging(0.997) TCGA-BH-A0B6-01 3 174581815 174581815 C G NAALADL2 Intron 0.30 TCGA-BH-A0B6-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.26 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.20 tolerated(0.06) possibly_damaging(0.801) TCGA-BH-A0B6-01 3 179519032 179519032 C G PEX5L 3'UTR 0.22 TCGA-BH-A0B6-01 3 181430271 181430271 C G SOX2 Silent p.V41V 0.19 TCGA-BH-A0B6-01 3 18390766 18390766 C T SATB1 Missense_Mutation p.E762K 0.16 deleterious(0) probably_damaging(0.941) TCGA-BH-A0B6-01 3 184094049 184094049 C G THPO 5'UTR 0.20 TCGA-BH-A0B6-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.24 deleterious_low_confidence(0.02) benign(0.001) TCGA-BH-A0B6-01 3 185316231 185316231 C G SENP2 Silent p.L63L 0.24 TCGA-BH-A0B6-01 3 185649493 185649493 C G TRA2B Intron 0.09 TCGA-BH-A0B6-01 3 185649586 185649586 C T TRA2B Intron 0.13 TCGA-BH-A0B6-01 3 186461620 186461620 C T KNG1 3'Flank 0.21 TCGA-BH-A0B6-01 3 186502630 186502630 G A EIF4A2 Intron 0.34 TCGA-BH-A0B6-01 3 186504030 186504030 G A EIF4A2 Missense_Mutation p.E199K 0.27 deleterious(0.03) benign(0.072) TCGA-BH-A0B6-01 3 193042777 193042777 G A ATP13A5 Missense_Mutation p.S517L 0.24 tolerated(0.12) benign(0.069) TCGA-BH-A0B6-01 3 196199119 196199119 C T RNF168 Silent p.L429L 0.30 TCGA-BH-A0B6-01 3 196199266 196199266 C T RNF168 Silent p.L380L 0.20 TCGA-BH-A0B6-01 3 196658748 196658748 C G SENP5 3'UTR 0.22 TCGA-BH-A0B6-01 3 2613184 2613184 G A CNTN4 5'UTR 0.14 TCGA-BH-A0B6-01 3 27215993 27215993 C T NEK10 Missense_Mutation p.E905K 0.16 tolerated(0.08) possibly_damaging(0.493) TCGA-BH-A0B6-01 3 35727353 35727353 A T ARPP21 Intron 0.15 TCGA-BH-A0B6-01 3 36780190 36780190 G A DCLK3 5'UTR 0.17 TCGA-BH-A0B6-01 3 37459572 37459572 C G C3orf35 Intron 0.10 TCGA-BH-A0B6-01 3 38601833 38601833 G A SCN5A Silent p.I1350I 0.14 TCGA-BH-A0B6-01 3 38647444 38647444 C A SCN5A Nonsense_Mutation p.E446* 0.11 TCGA-BH-A0B6-01 3 38783794 38783794 C G SCN10A Missense_Mutation p.Q698H 0.24 tolerated(0.1) benign(0.001) TCGA-BH-A0B6-01 3 39149326 39149326 G C TTC21A 5'UTR 0.29 TCGA-BH-A0B6-01 3 40353650 40353650 G C EIF1B 3'UTR 0.07 TCGA-BH-A0B6-01 3 40433438 40433438 C G ENTPD3 Intron 0.10 TCGA-BH-A0B6-01 3 40529700 40529700 C T ZNF619 Nonsense_Mutation p.Q607* 0.09 TCGA-BH-A0B6-01 3 42660574 42660574 C T NKTR Missense_Mutation p.R66C 0.35 deleterious_low_confidence(0) unknown(0) TCGA-BH-A0B6-01 3 44670995 44670995 G A ZNF197 Missense_Mutation p.V117I 0.19 tolerated(0.17) benign(0.017) TCGA-BH-A0B6-01 3 47122395 47122395 C T SETD2 Intron 0.14 TCGA-BH-A0B6-01 3 47122398 47122398 C T SETD2 Intron 0.16 TCGA-BH-A0B6-01 3 47122419 47122419 C T SETD2 Intron 0.15 TCGA-BH-A0B6-01 3 49020862 49020862 C T ARIH2 3'UTR 0.15 TCGA-BH-A0B6-01 3 49041556 49041556 C T P4HTM Silent p.S250S 0.31 TCGA-BH-A0B6-01 3 49055212 49055212 C G DALRD3 Missense_Mutation p.E184D 0.16 tolerated(0.15) benign(0.006) TCGA-BH-A0B6-01 3 49348123 49348123 G C USP4 Missense_Mutation p.S295C 0.13 tolerated(0.17) benign(0.345) TCGA-BH-A0B6-01 3 49736493 49736493 C G RNF123 Missense_Mutation p.S240C 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-BH-A0B6-01 3 5021412 5021412 G A BHLHE40 Silent p.R3R 0.33 TCGA-BH-A0B6-01 3 51430965 51430965 C T RBM15B Missense_Mutation p.S712L 0.22 tolerated(0.07) benign(0.185) TCGA-BH-A0B6-01 3 51432333 51432333 C T RBM15B 3'UTR 0.29 TCGA-BH-A0B6-01 3 5248877 5248877 C T EDEM1 Silent p.L419L 0.22 TCGA-BH-A0B6-01 3 5258567 5258567 C T EDEM1 3'UTR 0.19 TCGA-BH-A0B6-01 3 55002509 55002509 C A CACNA2D3 Missense_Mutation p.Q828K 0.13 deleterious(0.01) benign(0.036) TCGA-BH-A0B6-01 3 58849619 58849619 C T C3orf67 Splice_Site p.X295_splice 0.27 TCGA-BH-A0B6-01 3 65344789 65344789 C T MAGI1 Intron 0.11 TCGA-BH-A0B6-01 3 69157713 69157713 G C LMOD3 3'UTR 0.21 TCGA-BH-A0B6-01 3 75472089 75472089 C T FAM86DP RNA 0.31 TCGA-BH-A0B6-01 3 78700970 78700970 C T ROBO1 Nonsense_Mutation p.W908* 0.28 TCGA-BH-A0B6-01 3 87309196 87309196 G C POU1F1 Missense_Mutation p.Q268E 0.21 tolerated(0.13) possibly_damaging(0.67) TCGA-BH-A0B6-01 3 93593032 93593032 G A PROS1 3'UTR 0.14 TCGA-BH-A0B6-01 3 97663523 97663523 C G MINA 3'UTR 0.21 TCGA-BH-A0B6-01 3 97744472 97744472 C T GABRR3 RNA 0.07 TCGA-BH-A0B6-01 3 98234335 98234335 C T CLDND1 3'UTR 0.29 TCGA-BH-A0B6-01 3 98531299 98531299 G A DCBLD2 Nonsense_Mutation p.Q414* 0.34 TCGA-BH-A0B6-01 3 9854937 9854937 G A TTLL3 Missense_Mutation p.E218K 0.16 tolerated(0.13) possibly_damaging(0.557) TCGA-BH-A0B6-01 3 9984832 9984832 C G CRELD1 Missense_Mutation p.Q297E 0.11 tolerated(0.46) benign(0.327) TCGA-BH-A0B6-01 4 104116339 104116339 C T CENPE Missense_Mutation p.E137K 0.11 possibly_damaging(0.844) TCGA-BH-A0B6-01 4 108641343 108641343 G A PAPSS1 5'UTR 0.22 TCGA-BH-A0B6-01 4 113568856 113568856 C T LARP7 Silent p.I343I 0.24 TCGA-BH-A0B6-01 4 119154241 119154241 G C NDST3 Missense_Mutation p.E632Q 0.12 deleterious(0) benign(0.404) TCGA-BH-A0B6-01 4 119649793 119649793 C T SEC24D Missense_Mutation p.E961K 0.08 tolerated(0.78) benign(0.407) TCGA-BH-A0B6-01 4 119953246 119953246 G A SYNPO2 Intron 0.20 TCGA-BH-A0B6-01 4 120419511 120419511 C T PDE5A 3'UTR 0.12 TCGA-BH-A0B6-01 4 122744747 122744747 C T CCNA2 Missense_Mutation p.E13K 0.14 tolerated_low_confidence(0.05) benign(0.122) TCGA-BH-A0B6-01 4 146025645 146025645 G C ABCE1 Missense_Mutation p.K27N 0.16 tolerated(0.15) probably_damaging(0.968) TCGA-BH-A0B6-01 4 147561215 147561215 C G POU4F2 Missense_Mutation p.S162W 0.15 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BH-A0B6-01 4 147858764 147858764 G C TTC29 Nonsense_Mutation p.S53* 0.07 TCGA-BH-A0B6-01 4 148453722 148453722 G T EDNRA Nonsense_Mutation p.E205* 0.20 TCGA-BH-A0B6-01 4 153549311 153549311 G A TMEM154 3'UTR 0.23 TCGA-BH-A0B6-01 4 154636724 154636724 C G RNF175 Missense_Mutation p.E241Q 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A0B6-01 4 155156442 155156442 G C DCHS2 Nonsense_Mutation p.S2666* 0.11 TCGA-BH-A0B6-01 4 15516354 15516354 G A CC2D2A Missense_Mutation p.D248N 0.23 tolerated(0.31) benign(0.003) TCGA-BH-A0B6-01 4 158262534 158262534 G A GRIA2 Missense_Mutation p.E655K 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-BH-A0B6-01 4 15995622 15995622 G A PROM1 Silent p.L585L 0.15 TCGA-BH-A0B6-01 4 16229100 16229100 C G TAPT1 5'Flank 0.15 TCGA-BH-A0B6-01 4 164449907 164449907 G T MARCH1 Nonsense_Mutation p.S288* 0.09 TCGA-BH-A0B6-01 4 170037744 170037744 C T SH3RF1 Silent p.V605V 0.33 TCGA-BH-A0B6-01 4 183664561 183664561 C G TENM3 Silent p.V1206V 0.11 TCGA-BH-A0B6-01 4 1838207 1838207 C A LETM1 Silent p.V229V 0.12 TCGA-BH-A0B6-01 4 1838230 1838230 C G LETM1 Missense_Mutation p.E222Q 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 4 1838291 1838291 C G LETM1 Silent p.R201R 0.11 TCGA-BH-A0B6-01 4 184019235 184019235 G A WWC2 5'Flank 0.11 TCGA-BH-A0B6-01 4 184019239 184019239 G A WWC2 5'Flank 0.12 TCGA-BH-A0B6-01 4 186544246 186544246 C G SORBS2 Silent p.L875L 0.18 TCGA-BH-A0B6-01 4 23886407 23886407 G T PPARGC1A Missense_Mutation p.Q68K 0.09 deleterious(0) possibly_damaging(0.661) TCGA-BH-A0B6-01 4 25005573 25005573 C T LGI2 Missense_Mutation p.D380N 0.16 tolerated(0.05) benign(0.065) TCGA-BH-A0B6-01 4 53463077 53463077 G C USP46 3'UTR 0.08 TCGA-BH-A0B6-01 4 54250003 54250003 G A FIP1L1 Missense_Mutation p.V98I 0.09 tolerated(0.05) benign(0.033) TCGA-BH-A0B6-01 4 55592067 55592067 C T KIT Missense_Mutation p.S464L 0.13 tolerated(0.35) benign(0.021) TCGA-BH-A0B6-01 4 55605601 55605601 G A KIT 3'UTR 0.20 TCGA-BH-A0B6-01 4 57314710 57314710 G C PAICS Missense_Mutation p.E181Q 0.11 probably_damaging(0.999) TCGA-BH-A0B6-01 4 60015 60015 G A ZNF595 Silent p.L65L 0.06 TCGA-BH-A0B6-01 4 69343230 69343230 C G TMPRSS11E Missense_Mutation p.S284C 0.10 deleterious(0) possibly_damaging(0.781) TCGA-BH-A0B6-01 4 71024528 71024528 G C C4orf40 Missense_Mutation p.E187Q 0.11 tolerated(0.25) unknown(0) TCGA-BH-A0B6-01 4 74361081 74361081 C G AFM Missense_Mutation p.Q375E 0.21 tolerated(0.61) benign(0.002) TCGA-BH-A0B6-01 4 74702511 74702511 C T CXCL6 Missense_Mutation p.S15L 0.32 tolerated(0.05) benign(0.003) TCGA-BH-A0B6-01 4 7967298 7967298 G A ABLIM2 3'Flank 0.31 TCGA-BH-A0B6-01 4 83346751 83346751 C G HNRNPDL Intron 0.11 TCGA-BH-A0B6-01 4 860255 860255 G C GAK Silent p.L980L 0.08 TCGA-BH-A0B6-01 4 86937754 86937754 C G MAPK10 3'UTR 0.15 TCGA-BH-A0B6-01 4 87745030 87745030 C T SLC10A6 Silent p.L315L 0.19 TCGA-BH-A0B6-01 4 87745039 87745039 C G SLC10A6 Missense_Mutation p.K312N 0.19 deleterious(0) possibly_damaging(0.691) TCGA-BH-A0B6-01 4 87746607 87746607 G C SLC10A6 Silent p.L295L 0.10 TCGA-BH-A0B6-01 4 87928413 87928413 G C AFF1 Intron 0.50 TCGA-BH-A0B6-01 4 88414913 88414913 C T SPARCL1 Missense_Mutation p.D347N 0.09 tolerated(0.24) possibly_damaging(0.539) TCGA-BH-A0B6-01 5 102612733 102612733 G T C5orf30 3'UTR 0.09 TCGA-BH-A0B6-01 5 112884355 112884355 C G YTHDC2 Nonsense_Mutation p.S538* 0.09 TCGA-BH-A0B6-01 5 118264307 118264307 G A DTWD2 Silent p.I174I 0.18 TCGA-BH-A0B6-01 5 1320765 1320765 C T CLPTM1L Missense_Mutation p.D500N 0.11 deleterious(0) probably_damaging(0.985) TCGA-BH-A0B6-01 5 132270373 132270373 C T AFF4 Silent p.Q128Q 0.12 TCGA-BH-A0B6-01 5 133898055 133898055 G C JADE2 Missense_Mutation p.E284Q 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A0B6-01 5 135383098 135383098 G C TGFBI Missense_Mutation p.E254Q 0.17 tolerated(0.07) probably_damaging(0.996) TCGA-BH-A0B6-01 5 13692071 13692071 G A DNAH5 3'UTR 0.21 TCGA-BH-A0B6-01 5 13737381 13737381 G A DNAH5 Missense_Mutation p.A3812V 0.38 possibly_damaging(0.483) TCGA-BH-A0B6-01 5 137722119 137722119 G C KDM3B Missense_Mutation p.E397Q 0.20 tolerated_low_confidence(0.4) benign(0.019) TCGA-BH-A0B6-01 5 140174599 140174599 C T PCDHA2 Missense_Mutation p.S17L 0.10 tolerated_low_confidence(0.69) benign(0.005) TCGA-BH-A0B6-01 5 140221572 140221572 C G PCDHA8 Silent p.L222L 0.12 TCGA-BH-A0B6-01 5 140712607 140712607 G C PCDHGA1 Missense_Mutation p.E786Q 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-BH-A0B6-01 5 140807592 140807592 G A PCDHGB6 Intron 0.13 TCGA-BH-A0B6-01 5 14358421 14358421 G A TRIO Silent p.V727V 0.10 TCGA-BH-A0B6-01 5 150947205 150947205 G A FAT2 Nonsense_Mutation p.Q430* 0.09 TCGA-BH-A0B6-01 5 159821587 159821587 C T C5orf54 Missense_Mutation p.R304K 0.26 tolerated(0.33) benign(0.061) TCGA-BH-A0B6-01 5 172581376 172581376 C G BNIP1 Missense_Mutation p.L120V 0.10 tolerated(0.09) possibly_damaging(0.55) TCGA-BH-A0B6-01 5 173535980 173535980 C T NSG2 3'UTR 0.10 TCGA-BH-A0B6-01 5 176832169 176832169 G A F12 Nonsense_Mutation p.Q139* 0.09 TCGA-BH-A0B6-01 5 179069346 179069346 G C C5orf60 Missense_Mutation p.I276M 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.506) TCGA-BH-A0B6-01 5 180276354 180276354 C G ZFP62 Missense_Mutation p.R714T 0.12 deleterious(0.04) probably_damaging(0.989) TCGA-BH-A0B6-01 5 180665243 180665243 G C GNB2L1 Intron 0.15 TCGA-BH-A0B6-01 5 24535355 24535355 C T CDH10 Missense_Mutation p.R227K 0.11 deleterious(0) probably_damaging(0.959) TCGA-BH-A0B6-01 5 32087471 32087471 G A PDZD2 Missense_Mutation p.R1306Q 0.50 tolerated(0.45) benign(0.001) TCGA-BH-A0B6-01 5 32109108 32109108 C T PDZD2 3'UTR 0.24 TCGA-BH-A0B6-01 5 34864560 34864560 C A TTC23L Missense_Mutation p.F185L 0.10 tolerated(0.7) benign(0.002) TCGA-BH-A0B6-01 5 353864 353864 G C AHRR Missense_Mutation p.E32Q 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-BH-A0B6-01 5 36049116 36049116 G A UGT3A2 Missense_Mutation p.L240F 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 5 37180995 37180995 C T C5orf42 Missense_Mutation p.R1845K 0.23 tolerated(0.96) benign(0.076) TCGA-BH-A0B6-01 5 37187656 37187656 C G C5orf42 Missense_Mutation p.D1314H 0.24 deleterious(0) probably_damaging(0.98) TCGA-BH-A0B6-01 5 37227795 37227795 C G C5orf42 Missense_Mutation p.D416H 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 5 41153970 41153970 G A C6 Silent p.Y744Y 0.09 TCGA-BH-A0B6-01 5 41917286 41917286 G C C5orf51 Missense_Mutation p.G257A 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 5 43175547 43175547 C T ZNF131 3'UTR 0.17 TCGA-BH-A0B6-01 5 60822144 60822144 G A ZSWIM6 Silent p.L586L 0.17 TCGA-BH-A0B6-01 5 66478815 66478815 G C CD180 Missense_Mutation p.S619C 0.17 tolerated(0.05) benign(0.181) TCGA-BH-A0B6-01 5 66479281 66479281 G A CD180 Missense_Mutation p.L464F 0.15 deleterious(0.04) benign(0.173) TCGA-BH-A0B6-01 5 68513905 68513905 C T MRPS36 Intron 0.29 TCGA-BH-A0B6-01 5 71492254 71492254 C T MAP1B Silent p.D1024D 0.17 TCGA-BH-A0B6-01 5 72144062 72144062 C T TNPO1 Intron 0.23 TCGA-BH-A0B6-01 5 76342394 76342394 G C AGGF1 Missense_Mutation p.D365H 0.30 deleterious(0.01) possibly_damaging(0.778) TCGA-BH-A0B6-01 5 77714654 77714654 C G SCAMP1 Missense_Mutation p.F133L 0.11 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 5 79855781 79855781 G A ANKRD34B Nonsense_Mutation p.Q20* 0.19 TCGA-BH-A0B6-01 5 93076634 93076634 C G POU5F2 Missense_Mutation p.W212C 0.09 deleterious(0.04) probably_damaging(0.926) TCGA-BH-A0B6-01 6 100896443 100896443 G C SIM1 Missense_Mutation p.P219A 0.30 deleterious(0.01) possibly_damaging(0.77) TCGA-BH-A0B6-01 6 100957291 100957291 C T ASCC3 Missense_Mutation p.D2194N 0.18 deleterious_low_confidence(0.01) benign(0.008) TCGA-BH-A0B6-01 6 105406098 105406098 C A LIN28B Missense_Mutation p.F45L 0.16 deleterious(0.01) possibly_damaging(0.847) TCGA-BH-A0B6-01 6 107387475 107387475 G C BEND3 3'UTR 0.31 TCGA-BH-A0B6-01 6 108395499 108395499 G A OSTM1 Silent p.F119F 0.21 TCGA-BH-A0B6-01 6 109583154 109583154 C T C6orf183 RNA 0.11 TCGA-BH-A0B6-01 6 109757394 109757394 C G PPIL6 Missense_Mutation p.K48N 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-BH-A0B6-01 6 110501679 110501679 C T CDC40 Missense_Mutation p.S11F 0.32 tolerated(0.34) unknown(0) TCGA-BH-A0B6-01 6 111136325 111136325 G C CDK19 Missense_Mutation p.F5L 0.20 deleterious(0) probably_damaging(0.952) TCGA-BH-A0B6-01 6 112450216 112450216 G C LAMA4 Missense_Mutation p.L1399V 0.30 deleterious(0) possibly_damaging(0.701) TCGA-BH-A0B6-01 6 116574844 116574844 C T TSPYL4 Missense_Mutation p.D110N 0.23 tolerated(0.12) benign(0.01) TCGA-BH-A0B6-01 6 117858383 117858383 C G DCBLD1 Missense_Mutation p.S252C 0.08 deleterious(0) benign(0.146) TCGA-BH-A0B6-01 6 117869086 117869086 C T DCBLD1 Intron 0.25 TCGA-BH-A0B6-01 6 118596740 118596740 G A SLC35F1 Missense_Mutation p.M252I 0.15 deleterious(0) possibly_damaging(0.728) TCGA-BH-A0B6-01 6 12123896 12123896 G C HIVEP1 Missense_Mutation p.E1290Q 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 6 127901510 127901510 G A C6orf58 Silent p.K163K 0.30 TCGA-BH-A0B6-01 6 129608999 129608999 G A LAMA2 Missense_Mutation p.E849K 0.12 deleterious(0.02) possibly_damaging(0.61) TCGA-BH-A0B6-01 6 133072459 133072459 G A VNN2 Missense_Mutation p.S342F 0.12 tolerated(0.92) benign(0.006) TCGA-BH-A0B6-01 6 13360962 13360962 G A GFOD1 3'UTR 0.24 TCGA-BH-A0B6-01 6 134312286 134312286 G A SLC2A12 3'UTR 0.07 TCGA-BH-A0B6-01 6 13487002 13487002 C T GFOD1 Missense_Mutation p.E41K 0.11 tolerated(0.29) benign(0.223) TCGA-BH-A0B6-01 6 1390509 1390509 C T FOXF2 Silent p.I109I 0.11 TCGA-BH-A0B6-01 6 144783990 144783990 C T UTRN Silent p.L1018L 0.22 TCGA-BH-A0B6-01 6 149732466 149732466 C T TAB2 3'UTR 0.23 TCGA-BH-A0B6-01 6 151153202 151153202 G A PLEKHG1 Silent p.Q985Q 0.07 TCGA-BH-A0B6-01 6 151672680 151672680 G C AKAP12 Missense_Mutation p.E1052Q 0.18 tolerated(0.08) benign(0.173) TCGA-BH-A0B6-01 6 152510425 152510425 C G SYNE1 Missense_Mutation p.E7755Q 0.20 benign(0.266) TCGA-BH-A0B6-01 6 152614837 152614837 C T SYNE1 Silent p.Q5966Q 0.11 TCGA-BH-A0B6-01 6 157528715 157528715 G C ARID1B Missense_Mutation p.R2147T 0.15 probably_damaging(0.988) TCGA-BH-A0B6-01 6 157744494 157744494 G A TMEM242 Missense_Mutation p.S13F 0.12 deleterious(0.01) possibly_damaging(0.678) TCGA-BH-A0B6-01 6 159420602 159420602 C T RSPH3 Missense_Mutation p.R136Q 0.14 tolerated_low_confidence(0.18) benign(0.01) TCGA-BH-A0B6-01 6 168352584 168352584 G A MLLT4 Missense_Mutation p.S1510N 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BH-A0B6-01 6 170052035 170052035 G A WDR27 Missense_Mutation p.S491L 0.25 tolerated(0.11) benign(0.023) TCGA-BH-A0B6-01 6 17773729 17773729 G C KIF13A Missense_Mutation p.S1435C 0.07 tolerated(0.12) possibly_damaging(0.664) TCGA-BH-A0B6-01 6 26056117 26056117 C A HIST1H1C Silent p.A180A 0.13 TCGA-BH-A0B6-01 6 27114581 27114581 G A HIST1H2BK 5'UTR 0.07 TCGA-BH-A0B6-01 6 28134543 28134543 G A ZNF192P1 RNA 0.18 TCGA-BH-A0B6-01 6 28219392 28219392 C G ZKSCAN4 Missense_Mutation p.E123Q 0.10 deleterious(0) probably_damaging(0.966) TCGA-BH-A0B6-01 6 28402590 28402590 C T ZSCAN23 Silent p.E274E 0.18 TCGA-BH-A0B6-01 6 28539633 28539633 C T SCAND3 3'UTR 0.17 TCGA-BH-A0B6-01 6 2890790 2890790 G A SERPINB9 Silent p.L246L 0.22 TCGA-BH-A0B6-01 6 29454735 29454735 G C MAS1L Missense_Mutation p.F315L 0.21 deleterious(0) benign(0.014) TCGA-BH-A0B6-01 6 29974840 29974840 G A ZNRD1-AS1 Intron 0.16 TCGA-BH-A0B6-01 6 3006762 3006762 G A NQO2 5'UTR 0.15 TCGA-BH-A0B6-01 6 30553699 30553699 G A ABCF1 Silent p.L548L 0.42 TCGA-BH-A0B6-01 6 30861152 30861152 C A DDR1 Silent p.I433I 0.14 TCGA-BH-A0B6-01 6 31592035 31592035 C G PRRC2A Intron 0.11 TCGA-BH-A0B6-01 6 31627792 31627792 C T C6orf47 5'UTR 0.12 TCGA-BH-A0B6-01 6 32039828 32039828 G A TNXB Silent p.F1643F 0.19 TCGA-BH-A0B6-01 6 32609762 32609762 C T HLA-DQA1 Silent p.V115V 0.18 TCGA-BH-A0B6-01 6 32796604 32796604 G C TAP2 Intron 0.27 TCGA-BH-A0B6-01 6 33267949 33267949 G A TAPBP 3'Flank 0.24 TCGA-BH-A0B6-01 6 33283446 33283446 G C ZBTB22 Silent p.L416L 0.26 TCGA-BH-A0B6-01 6 33284490 33284490 G A ZBTB22 Silent p.F68F 0.12 TCGA-BH-A0B6-01 6 34215569 34215569 G C C6orf1 5'UTR 0.16 TCGA-BH-A0B6-01 6 34511944 34511944 C G SPDEF Missense_Mutation p.D97H 0.16 deleterious(0) probably_damaging(0.99) TCGA-BH-A0B6-01 6 34985612 34985612 G A ANKS1A Missense_Mutation p.E596K 0.17 tolerated(0.48) benign(0.004) TCGA-BH-A0B6-01 6 34985643 34985643 G A ANKS1A Missense_Mutation p.R606Q 0.19 tolerated(0.05) benign(0.014) TCGA-BH-A0B6-01 6 36464500 36464500 G C STK38 Missense_Mutation p.L419V 0.11 tolerated(0.3) benign(0.158) TCGA-BH-A0B6-01 6 38718251 38718251 G C DNAH8 Splice_Site p.X215_splice 0.10 TCGA-BH-A0B6-01 6 40400499 40400499 G A LRFN2 Silent p.D118D 0.12 TCGA-BH-A0B6-01 6 41060792 41060792 G C NFYA Missense_Mutation p.E286Q 0.09 deleterious(0.01) probably_damaging(0.916) TCGA-BH-A0B6-01 6 41089095 41089095 G A ADCY10P1 RNA 0.12 TCGA-BH-A0B6-01 6 42156389 42156389 C G GUCA1B Missense_Mutation p.W96C 0.21 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 6 42626034 42626034 G C UBR2 Missense_Mutation p.E1013D 0.12 tolerated(0.39) benign(0.001) TCGA-BH-A0B6-01 6 42905863 42905863 C A CNPY3 Silent p.I177I 0.21 TCGA-BH-A0B6-01 6 43305941 43305941 G A ZNF318 Missense_Mutation p.T1932I 0.16 benign(0.02) TCGA-BH-A0B6-01 6 43475242 43475242 C T LRRC73 Missense_Mutation p.E278K 0.23 tolerated_low_confidence(0.44) benign(0.026) TCGA-BH-A0B6-01 6 43494463 43494463 C T XPO5 Silent p.K981K 0.25 TCGA-BH-A0B6-01 6 4996298 4996298 G C RPP40 Missense_Mutation p.F260L 0.20 deleterious(0) probably_damaging(0.984) TCGA-BH-A0B6-01 6 55739250 55739250 C G BMP5 Missense_Mutation p.Q138H 0.23 tolerated(0.29) benign(0.02) TCGA-BH-A0B6-01 6 56362839 56362839 C G DST Missense_Mutation p.D4014H 0.26 probably_damaging(1) TCGA-BH-A0B6-01 6 56462600 56462600 C G DST Missense_Mutation p.D1422H 0.19 possibly_damaging(0.495) TCGA-BH-A0B6-01 6 65301429 65301429 A T EYS Missense_Mutation p.L1444H 0.29 deleterious(0) benign(0.418) TCGA-BH-A0B6-01 6 7590470 7590470 C G SNRNP48 5'UTR 0.33 TCGA-BH-A0B6-01 6 76385692 76385692 C G SENP6 Missense_Mutation p.Q515E 0.34 tolerated(0.3) benign(0.004) TCGA-BH-A0B6-01 6 80626219 80626219 C G ELOVL4 3'UTR 0.17 TCGA-BH-A0B6-01 6 86332351 86332351 C T SYNCRIP Missense_Mutation p.R286K 0.19 deleterious(0.01) possibly_damaging(0.688) TCGA-BH-A0B6-01 6 87928331 87928331 G A ZNF292 Silent p.L140L 0.28 TCGA-BH-A0B6-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.31 deleterious(0) possibly_damaging(0.79) TCGA-BH-A0B6-01 6 97720877 97720877 G A MMS22L Silent p.L134L 0.19 TCGA-BH-A0B6-01 6 99887703 99887703 C T USP45 Missense_Mutation p.R701K 0.39 tolerated(0.24) possibly_damaging(0.67) TCGA-BH-A0B6-01 7 100395361 100395361 C G ZAN 3'UTR 0.21 TCGA-BH-A0B6-01 7 100479731 100479731 C G SRRT Missense_Mutation p.F152L 0.14 tolerated(0.38) probably_damaging(0.93) TCGA-BH-A0B6-01 7 100773724 100773724 C T SERPINE1 Silent p.L98L 0.13 TCGA-BH-A0B6-01 7 100781341 100781341 C T SERPINE1 3'UTR 0.33 TCGA-BH-A0B6-01 7 101943912 101943912 C T SH2B2 Silent p.F69F 0.35 TCGA-BH-A0B6-01 7 102108778 102108778 C T LRWD1 Silent p.L291L 0.15 TCGA-BH-A0B6-01 7 102956214 102956214 C G DNAJC2 Missense_Mutation p.E545Q 0.17 deleterious(0.03) benign(0.265) TCGA-BH-A0B6-01 7 104748225 104748225 G A KMT2E Silent p.L1107L 0.11 TCGA-BH-A0B6-01 7 106526648 106526648 G C PIK3CG Missense_Mutation p.E981Q 0.18 deleterious(0) probably_damaging(0.962) TCGA-BH-A0B6-01 7 107329554 107329554 C G SLC26A4 Nonsense_Mutation p.S353* 0.14 TCGA-BH-A0B6-01 7 112722153 112722153 C T GPR85 3'UTR 0.23 TCGA-BH-A0B6-01 7 114656125 114656125 G C MDFIC 3'UTR 0.25 TCGA-BH-A0B6-01 7 128431589 128431589 G A CCDC136 5'Flank 0.21 TCGA-BH-A0B6-01 7 128432227 128432227 G C CCDC136 5'UTR 0.09 TCGA-BH-A0B6-01 7 129067360 129067360 C T AHCYL2 3'UTR 0.14 TCGA-BH-A0B6-01 7 129395780 129395780 C T NRF1 3'UTR 0.20 TCGA-BH-A0B6-01 7 130021575 130021575 C A CPA1 Silent p.I84I 0.14 TCGA-BH-A0B6-01 7 132470412 132470412 C G CHCHD3 Missense_Mutation p.E224Q 0.15 tolerated(0.66) benign(0.003) TCGA-BH-A0B6-01 7 135304257 135304257 C T NUP205 Silent p.V1350V 0.30 TCGA-BH-A0B6-01 7 138269544 138269544 C G TRIM24 Missense_Mutation p.L1001V 0.11 deleterious(0) probably_damaging(0.987) TCGA-BH-A0B6-01 7 140156449 140156449 C G MKRN1 Intron 0.10 TCGA-BH-A0B6-01 7 140244325 140244325 C T DENND2A Intron 0.26 TCGA-BH-A0B6-01 7 142448444 142448444 C G TRBV29-1 Missense_Mutation p.S13C 0.25 deleterious(0.01) unknown(0) TCGA-BH-A0B6-01 7 144015529 144015529 G C OR2A1 Missense_Mutation p.L104F 0.05 deleterious(0.03) benign(0.053) TCGA-BH-A0B6-01 7 1474033 1474033 G A MICALL2 3'UTR 0.20 TCGA-BH-A0B6-01 7 148892587 148892587 G A ZNF282 5'UTR 0.15 TCGA-BH-A0B6-01 7 1539236 1539236 G A INTS1 Silent p.I239I 0.12 TCGA-BH-A0B6-01 7 156450897 156450897 C T RNF32 Nonsense_Mutation p.R176* 0.12 TCGA-BH-A0B6-01 7 157208808 157208808 C T DNAJB6 3'UTR 0.17 TCGA-BH-A0B6-01 7 158719112 158719112 C T WDR60 Silent p.F797F 0.15 TCGA-BH-A0B6-01 7 23731056 23731056 C T FAM221A Nonsense_Mutation p.Q160* 0.16 TCGA-BH-A0B6-01 7 25163187 25163187 G C CYCS 3'UTR 0.17 TCGA-BH-A0B6-01 7 27211758 27211758 G A HOXA10 Silent p.L331L 0.24 TCGA-BH-A0B6-01 7 2749334 2749334 C G AMZ1 Missense_Mutation p.L278V 0.13 tolerated(0.45) benign(0.038) TCGA-BH-A0B6-01 7 30668244 30668244 G A GARS Missense_Mutation p.E590K 0.08 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 7 31377096 31377096 C T NEUROD6 3'UTR 0.14 TCGA-BH-A0B6-01 7 32535327 32535327 G A AVL9 Silent p.E2E 0.39 TCGA-BH-A0B6-01 7 36446159 36446159 C G ANLN Nonsense_Mutation p.S286* 0.10 TCGA-BH-A0B6-01 7 39503959 39503959 G A POU6F2 Missense_Mutation p.E584K 0.27 deleterious(0.01) unknown(0) TCGA-BH-A0B6-01 7 4213923 4213923 G A SDK1 Missense_Mutation p.E1624K 0.16 tolerated(0.09) benign(0.099) TCGA-BH-A0B6-01 7 44184689 44184689 G A GCK 3'UTR 0.21 TCGA-BH-A0B6-01 7 44573386 44573386 G A NPC1L1 Missense_Mutation p.P745S 0.21 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 7 45797717 45797717 G A SEPT7P2 RNA 0.13 TCGA-BH-A0B6-01 7 4722428 4722428 C T FOXK1 Silent p.L163L 0.18 TCGA-BH-A0B6-01 7 47408074 47408074 G A TNS3 Silent p.L723L 0.10 TCGA-BH-A0B6-01 7 4838868 4838868 C T RADIL 3'UTR 0.13 TCGA-BH-A0B6-01 7 48452161 48452161 C T ABCA13 Missense_Mutation p.S4147L 0.27 probably_damaging(0.997) TCGA-BH-A0B6-01 7 5430072 5430072 C T TNRC18 Intron 0.19 TCGA-BH-A0B6-01 7 6026493 6026493 C A PMS2 Nonsense_Mutation p.E635* 0.09 TCGA-BH-A0B6-01 7 6202647 6202647 C G CYTH3 3'UTR 0.20 TCGA-BH-A0B6-01 7 64838804 64838804 C G ZNF92 5'UTR 0.26 TCGA-BH-A0B6-01 7 64838835 64838835 C T ZNF92 5'UTR 0.18 TCGA-BH-A0B6-01 7 6731349 6731349 G C ZNF12 Silent p.L408L 0.24 TCGA-BH-A0B6-01 7 71252120 71252120 C G CALN1 3'UTR 0.19 TCGA-BH-A0B6-01 7 72209518 72209518 G C TYW1B 3'UTR 0.09 TCGA-BH-A0B6-01 7 72738405 72738405 G A TRIM50 Silent p.T127T 0.20 TCGA-BH-A0B6-01 7 73246374 73246374 G C CLDN4 3'UTR 0.08 TCGA-BH-A0B6-01 7 73800910 73800910 G A CLIP2 Missense_Mutation p.E847K 0.29 deleterious(0.03) benign(0.212) TCGA-BH-A0B6-01 7 7410430 7410430 G A COL28A1 Nonsense_Mutation p.Q998* 0.15 TCGA-BH-A0B6-01 7 74202954 74202954 C T NCF1 Silent p.L319L 0.12 TCGA-BH-A0B6-01 7 75155246 75155246 C T PMS2P3 RNA 0.08 TCGA-BH-A0B6-01 7 77646994 77646994 C G MAGI2 3'UTR 0.16 TCGA-BH-A0B6-01 7 82387857 82387857 G C PCLO 3'UTR 0.24 TCGA-BH-A0B6-01 7 82784873 82784873 G C PCLO Missense_Mutation p.P362A 0.27 unknown(0) TCGA-BH-A0B6-01 7 8474187 8474187 C G NXPH1 5'UTR 0.39 TCGA-BH-A0B6-01 7 87069538 87069538 C G ABCB4 Missense_Mutation p.E513Q 0.09 deleterious(0) benign(0.094) TCGA-BH-A0B6-01 7 87743932 87743932 C G ADAM22 Silent p.L169L 0.17 TCGA-BH-A0B6-01 7 90014312 90014312 G C GTPBP10 Missense_Mutation p.K336N 0.08 deleterious(0) possibly_damaging(0.842) TCGA-BH-A0B6-01 7 90895958 90895958 G A FZD1 Missense_Mutation p.G588E 0.12 tolerated(0.18) benign(0.009) TCGA-BH-A0B6-01 7 92123612 92123612 C G PEX1 Missense_Mutation p.D1009H 0.26 deleterious(0) possibly_damaging(0.557) TCGA-BH-A0B6-01 7 94294542 94294542 C T PEG10 3'UTR 0.14 TCGA-BH-A0B6-01 7 99103904 99103904 G A ZKSCAN5 Silent p.L79L 0.11 TCGA-BH-A0B6-01 7 99725743 99725743 C G MBLAC1 Missense_Mutation p.S242W 0.15 tolerated(0.07) benign(0.003) TCGA-BH-A0B6-01 7 99798085 99798085 G A STAG3 Missense_Mutation p.D594N 0.11 deleterious(0) probably_damaging(0.937) TCGA-BH-A0B6-01 8 102681728 102681728 G A GRHL2 3'UTR 0.08 TCGA-BH-A0B6-01 8 104427218 104427218 G C DCAF13 5'UTR 0.70 TCGA-BH-A0B6-01 8 105405103 105405103 C G DPYS Missense_Mutation p.G451A 0.48 deleterious(0) probably_damaging(0.996) TCGA-BH-A0B6-01 8 110986315 110986315 G A KCNV1 Silent p.Y101Y 0.09 TCGA-BH-A0B6-01 8 113236641 113236642 - T CSMD3 3'UTR 0.49 TCGA-BH-A0B6-01 8 114111049 114111049 C T CSMD3 Missense_Mutation p.D285N 0.09 tolerated(0.44) possibly_damaging(0.677) TCGA-BH-A0B6-01 8 118830770 118830770 C G EXT1 Splice_Site p.X513_splice 0.18 TCGA-BH-A0B6-01 8 124818463 124818463 G T FAM91A1 Nonsense_Mutation p.E676* 0.28 TCGA-BH-A0B6-01 8 128808275 128808275 C G PVT1 RNA 0.26 TCGA-BH-A0B6-01 8 131792992 131792992 C T ADCY8 Missense_Mutation p.E1134K 0.29 tolerated(0.1) benign(0.001) TCGA-BH-A0B6-01 8 133090093 133090093 G C HHLA1 Missense_Mutation p.R387G 0.09 tolerated(0.38) benign(0.001) TCGA-BH-A0B6-01 8 133823350 133823350 G A PHF20L1 Missense_Mutation p.E303K 0.19 deleterious(0.02) benign(0.392) TCGA-BH-A0B6-01 8 139164914 139164914 G T FAM135B Missense_Mutation p.Q602K 0.09 tolerated(0.37) benign(0.011) TCGA-BH-A0B6-01 8 140743268 140743268 C G TRAPPC9 3'UTR 0.20 TCGA-BH-A0B6-01 8 143569763 143569763 G A BAI1 Missense_Mutation p.D783N 0.21 tolerated(0.06) possibly_damaging(0.822) TCGA-BH-A0B6-01 8 143623490 143623490 C T BAI1 Silent p.L1299L 0.36 TCGA-BH-A0B6-01 8 145624842 145624842 C T CPSF1 Missense_Mutation p.A432T 0.21 tolerated(0.18) benign(0.004) TCGA-BH-A0B6-01 8 19797005 19797005 G A LPL Silent p.L18L 0.21 TCGA-BH-A0B6-01 8 21560387 21560387 G C GFRA2 Missense_Mutation p.S383C 0.16 deleterious(0.03) possibly_damaging(0.625) TCGA-BH-A0B6-01 8 22262315 22262315 C T SLC39A14 Missense_Mutation p.S31L 0.13 tolerated_low_confidence(0.32) benign(0) TCGA-BH-A0B6-01 8 25268863 25268863 G C DOCK5 3'UTR 0.21 TCGA-BH-A0B6-01 8 26505211 26505211 C T DPYSL2 Silent p.F392F 0.08 TCGA-BH-A0B6-01 8 27605664 27605665 - T CCDC25 Frame_Shift_Ins p.A161Sfs*22 0.16 TCGA-BH-A0B6-01 8 28609739 28609739 G A EXTL3 3'UTR 0.38 TCGA-BH-A0B6-01 8 30553915 30553915 C G GSR Silent p.L259L 0.25 TCGA-BH-A0B6-01 8 32621719 32621719 G A NRG1 Silent p.E579E 0.23 TCGA-BH-A0B6-01 8 36666298 36666298 G A KCNU1 Missense_Mutation p.G240E 0.10 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 8 37690590 37690590 C T GPR124 Missense_Mutation p.S387L 0.14 deleterious(0) benign(0.261) TCGA-BH-A0B6-01 8 37823733 37823733 C T ADRB3 Silent p.V85V 0.11 TCGA-BH-A0B6-01 8 37823802 37823802 G C ADRB3 Missense_Mutation p.I62M 0.13 deleterious(0) probably_damaging(0.972) TCGA-BH-A0B6-01 8 38029500 38029500 C T LSM1 Missense_Mutation p.R33K 0.27 deleterious(0.04) possibly_damaging(0.571) TCGA-BH-A0B6-01 8 40012764 40012764 G A C8orf4 3'UTR 0.23 TCGA-BH-A0B6-01 8 41791980 41791980 G A KAT6A Missense_Mutation p.S1253F 0.15 unknown(0) TCGA-BH-A0B6-01 8 55539243 55539243 C T RP1 Missense_Mutation p.S934L 0.14 tolerated(0.54) benign(0.016) TCGA-BH-A0B6-01 8 56715155 56715155 G A TGS1 Silent p.K663K 0.08 TCGA-BH-A0B6-01 8 59500239 59500239 C G NSMAF Missense_Mutation p.E776Q 0.27 tolerated(0.29) benign(0.255) TCGA-BH-A0B6-01 8 60031442 60031442 C T TOX Intron 0.21 TCGA-BH-A0B6-01 8 67545535 67545535 C T VCPIP1 3'UTR 0.12 TCGA-BH-A0B6-01 8 67563703 67563703 C T VCPIP1 Silent p.K929K 0.12 TCGA-BH-A0B6-01 8 71025446 71025446 C A NCOA2 3'UTR 0.37 TCGA-BH-A0B6-01 8 7308710 7308710 G A SPAG11B Intron 0.11 TCGA-BH-A0B6-01 8 77619987 77619987 G A ZFHX4 Missense_Mutation p.E933K 0.14 possibly_damaging(0.486) TCGA-BH-A0B6-01 8 82354518 82354518 G C PMP2 3'UTR 0.14 TCGA-BH-A0B6-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.10 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B6-01 8 95504881 95504881 T G KIAA1429 Missense_Mutation p.S1603R 0.12 tolerated(0.45) probably_damaging(0.999) TCGA-BH-A0B6-01 8 95892416 95892416 G A INTS8 Missense_Mutation p.R981K 0.23 tolerated(0.55) benign(0.006) TCGA-BH-A0B6-01 9 100845176 100845176 C G NANS Missense_Mutation p.L307V 0.10 deleterious(0.03) possibly_damaging(0.718) TCGA-BH-A0B6-01 9 101798464 101798464 G C COL15A1 Missense_Mutation p.E768Q 0.07 deleterious(0.03) benign(0.076) TCGA-BH-A0B6-01 9 104238680 104238680 A G TMEM246 Missense_Mutation p.F232S 0.09 tolerated(0.08) benign(0.231) TCGA-BH-A0B6-01 9 104332687 104332687 C G GRIN3A 3'UTR 0.21 TCGA-BH-A0B6-01 9 106889684 106889684 G A SMC2 Missense_Mutation p.D905N 0.14 deleterious(0.02) benign(0.005) TCGA-BH-A0B6-01 9 113168453 113168453 C T SVEP1 Missense_Mutation p.E3143K 0.19 benign(0) TCGA-BH-A0B6-01 9 113169051 113169051 G A SVEP1 Silent p.L2943L 0.23 TCGA-BH-A0B6-01 9 114172339 114172339 G A KIAA0368 Silent p.S1022S 0.22 TCGA-BH-A0B6-01 9 114518740 114518740 C G C9orf84 Missense_Mutation p.E179Q 0.28 tolerated(0.06) possibly_damaging(0.663) TCGA-BH-A0B6-01 9 125027190 125027190 C G MRRF 5'UTR 0.26 TCGA-BH-A0B6-01 9 125551947 125551947 G A OR5C1 Missense_Mutation p.G246S 0.34 tolerated(0.08) benign(0.1) TCGA-BH-A0B6-01 9 125673814 125673814 C A ZBTB6 Nonsense_Mutation p.E180* 0.22 TCGA-BH-A0B6-01 9 127220493 127220493 G C GPR144 Missense_Mutation p.E555Q 0.09 tolerated(0.06) benign(0.188) TCGA-BH-A0B6-01 9 127689006 127689006 C T GOLGA1 Silent p.K138K 0.21 TCGA-BH-A0B6-01 9 129598605 129598605 G A ZBTB43 3'UTR 0.14 TCGA-BH-A0B6-01 9 131296228 131296228 G A GLE1 Silent p.Q548Q 0.16 TCGA-BH-A0B6-01 9 131457976 131457976 C G SET 3'UTR 0.19 TCGA-BH-A0B6-01 9 131458618 131458618 C T SET 3'UTR 0.12 TCGA-BH-A0B6-01 9 131482032 131482032 G A PKN3 Silent p.L731L 0.21 TCGA-BH-A0B6-01 9 131898844 131898844 C T PPP2R4 Missense_Mutation p.P219S 0.12 deleterious(0.04) possibly_damaging(0.865) TCGA-BH-A0B6-01 9 135285786 135285786 C G C9orf171 Missense_Mutation p.S43C 0.22 deleterious(0) possibly_damaging(0.594) TCGA-BH-A0B6-01 9 139912043 139912043 G A ABCA2 Silent p.I771I 0.14 TCGA-BH-A0B6-01 9 139912745 139912745 G A ABCA2 Silent p.I626I 0.12 TCGA-BH-A0B6-01 9 139945565 139945565 C T ENTPD2 Missense_Mutation p.R188Q 0.17 tolerated(0.52) benign(0.009) TCGA-BH-A0B6-01 9 140160341 140160341 G T NELFB Missense_Mutation p.M303I 0.08 deleterious(0) possibly_damaging(0.857) TCGA-BH-A0B6-01 9 2039490 2039490 C T SMARCA2 Missense_Mutation p.P127L 0.16 probably_damaging(0.996) TCGA-BH-A0B6-01 9 2193411 2193411 C G SMARCA2 3'UTR 0.09 TCGA-BH-A0B6-01 9 23691622 23691622 C T ELAVL2 3'UTR 0.11 TCGA-BH-A0B6-01 9 2718729 2718729 C T KCNV2 Silent p.F330F 0.10 TCGA-BH-A0B6-01 9 32631258 32631258 G A TAF1L Silent p.I1440I 0.11 TCGA-BH-A0B6-01 9 34483462 34483462 G C DNAI1 Missense_Mutation p.R22T 0.14 tolerated_low_confidence(0.07) benign(0.003) TCGA-BH-A0B6-01 9 34568931 34568931 C T CNTFR Missense_Mutation p.A17T 0.22 tolerated(0.38) unknown(0) TCGA-BH-A0B6-01 9 35800478 35800478 C G NPR2 Missense_Mutation p.Q406E 0.22 tolerated(1) benign(0) TCGA-BH-A0B6-01 9 36085236 36085236 G A RECK Intron 0.19 TCGA-BH-A0B6-01 9 40704366 40704366 C G SPATA31A3 Missense_Mutation p.L675V 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-BH-A0B6-01 9 4662873 4662873 G C PPAPDC2 Silent p.L166L 0.19 TCGA-BH-A0B6-01 9 742283 742283 G A KANK1 Missense_Mutation p.D1259N 0.10 deleterious(0.04) possibly_damaging(0.861) TCGA-BH-A0B6-01 9 74969381 74969381 C T ZFAND5 3'UTR 0.15 TCGA-BH-A0B6-01 9 78804114 78804114 G A PCSK5 Missense_Mutation p.E829K 0.18 deleterious(0.03) possibly_damaging(0.579) TCGA-BH-A0B6-01 9 79322053 79322053 C T PRUNE2 Missense_Mutation p.E1713K 0.12 tolerated(0.29) benign(0.009) TCGA-BH-A0B6-01 9 79930212 79930212 G A VPS13A Missense_Mutation p.D1486N 0.16 deleterious(0.02) probably_damaging(0.947) TCGA-BH-A0B6-01 9 79936536 79936536 C T VPS13A Missense_Mutation p.P1902S 0.24 tolerated(0.31) benign(0.004) TCGA-BH-A0B6-01 9 82322052 82322052 G A TLE4 Intron 0.11 TCGA-BH-A0B6-01 9 89560990 89560990 G C GAS1 Silent p.V235V 0.13 TCGA-BH-A0B6-01 9 89561839 89561839 G A GAS1 5'UTR 0.11 TCGA-BH-A0B6-01 9 93372654 93372654 C A DIRAS2 3'UTR 0.16 TCGA-BH-A0B6-01 9 94495670 94495670 G A ROR2 Missense_Mutation p.S224L 0.13 tolerated(0.05) benign(0.444) TCGA-BH-A0B6-01 X 100601397 100601397 C G TIMM8A 3'UTR 0.19 TCGA-BH-A0B6-01 X 100603691 100603691 G T TIMM8A 5'UTR 0.20 TCGA-BH-A0B6-01 X 101821105 101821105 G C NXF4 RNA 0.23 TCGA-BH-A0B6-01 X 101971235 101971235 G A GPRASP2 Missense_Mutation p.E480K 0.13 deleterious(0) benign(0.067) TCGA-BH-A0B6-01 X 105144612 105144612 G A NRK Missense_Mutation p.S238N 0.12 deleterious(0) probably_damaging(0.91) TCGA-BH-A0B6-01 X 10535385 10535385 C T MID1 Missense_Mutation p.R68Q 0.19 deleterious(0.01) benign(0.087) TCGA-BH-A0B6-01 X 105868386 105868386 G C CXorf57 Missense_Mutation p.E285Q 0.19 deleterious(0.04) probably_damaging(0.974) TCGA-BH-A0B6-01 X 106082596 106082596 C T TBC1D8B Missense_Mutation p.T421I 0.12 tolerated(0.31) benign(0.001) TCGA-BH-A0B6-01 X 107979343 107979343 C T IRS4 Missense_Mutation p.E78K 0.24 deleterious(0.02) benign(0.259) TCGA-BH-A0B6-01 X 11125028 11125028 C T HCCS 5'Flank 0.16 TCGA-BH-A0B6-01 X 115585533 115585533 G A SLC6A14 Missense_Mutation p.M443I 0.13 tolerated(0.2) possibly_damaging(0.542) TCGA-BH-A0B6-01 X 118123508 118123508 G A LONRF3 Silent p.E399E 0.08 TCGA-BH-A0B6-01 X 125685957 125685957 G A DCAF12L1 Missense_Mutation p.S212F 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 X 12840921 12840921 G A PRPS2 3'UTR 0.12 TCGA-BH-A0B6-01 X 130678703 130678703 G A OR13H1 Missense_Mutation p.R219Q 0.10 tolerated(0.23) benign(0.081) TCGA-BH-A0B6-01 X 134030913 134030913 C T MOSPD1 Missense_Mutation p.E128K 0.08 tolerated(0.59) benign(0.02) TCGA-BH-A0B6-01 X 135429149 135429149 C T GPR112 Missense_Mutation p.S1095F 0.25 deleterious(0) probably_damaging(0.921) TCGA-BH-A0B6-01 X 135956543 135956543 C T RBMX Missense_Mutation p.D312N 0.10 tolerated(0.07) probably_damaging(0.941) TCGA-BH-A0B6-01 X 150156382 150156382 G A HMGB3 Missense_Mutation p.E200K 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-BH-A0B6-01 X 1510815 1510815 C G SLC25A6 Missense_Mutation p.E30Q 0.23 deleterious(0.02) probably_damaging(0.965) TCGA-BH-A0B6-01 X 151366132 151366132 C G GABRA3 Missense_Mutation p.E302Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-BH-A0B6-01 X 151870490 151870490 G C MAGEA6 3'UTR 0.21 TCGA-BH-A0B6-01 X 152773756 152773756 C T BGN Silent p.F320F 0.09 TCGA-BH-A0B6-01 X 152936541 152936541 G A PNCK Missense_Mutation p.S323L 0.11 deleterious(0) probably_damaging(0.947) TCGA-BH-A0B6-01 X 153595102 153595102 C T FLNA Missense_Mutation p.E329K 0.09 deleterious(0.03) possibly_damaging(0.511) TCGA-BH-A0B6-01 X 154225253 154225253 G A F8 Missense_Mutation p.S128F 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 X 155231145 155231145 C T IL9R Intron 0.10 TCGA-BH-A0B6-01 X 21674356 21674356 G A KLHL34 Silent p.F517F 0.28 TCGA-BH-A0B6-01 X 21863500 21863500 G C MBTPS2 Missense_Mutation p.V146L 0.12 deleterious(0.02) benign(0.14) TCGA-BH-A0B6-01 X 2408591 2408591 G A ZBED1 Missense_Mutation p.S57F 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 X 24717574 24717574 C G POLA1 Missense_Mutation p.R20G 0.10 deleterious(0) probably_damaging(0.982) TCGA-BH-A0B6-01 X 2947357 2947357 C T ARSH Silent p.L423L 0.10 TCGA-BH-A0B6-01 X 30254805 30254805 T C MAGEB3 Missense_Mutation p.L255P 0.14 tolerated(0.1) probably_damaging(0.999) TCGA-BH-A0B6-01 X 35937905 35937905 G A CXorf22 5'UTR 0.23 TCGA-BH-A0B6-01 X 37515015 37515015 G A LANCL3 Silent p.K216K 0.22 TCGA-BH-A0B6-01 X 46433502 46433502 C A CHST7 Missense_Mutation p.P46T 0.08 deleterious_low_confidence(0.04) benign(0.001) TCGA-BH-A0B6-01 X 46541768 46541768 C T SLC9A7 Intron 0.25 TCGA-BH-A0B6-01 X 47272097 47272097 C G ZNF157 Missense_Mutation p.Q209E 0.10 deleterious(0.05) benign(0.029) TCGA-BH-A0B6-01 X 48624291 48624291 G C GLOD5 Missense_Mutation p.D39H 0.08 deleterious(0) probably_damaging(1) TCGA-BH-A0B6-01 X 48932328 48932328 T G WDR45 3'UTR 0.09 TCGA-BH-A0B6-01 X 48934351 48934351 C T WDR45 Silent p.E99E 0.18 TCGA-BH-A0B6-01 X 51149946 51149946 C T CXorf67 Silent p.T26T 0.08 TCGA-BH-A0B6-01 X 51486564 51486564 G C GSPT2 5'UTR 0.18 TCGA-BH-A0B6-01 X 54275292 54275292 G A WNK3 Silent p.I1163I 0.13 TCGA-BH-A0B6-01 X 54587191 54587191 C T GNL3L 3'UTR 0.42 TCGA-BH-A0B6-01 X 54785041 54785041 G C ITIH6 Missense_Mutation p.S489C 0.27 tolerated(0.07) possibly_damaging(0.784) TCGA-BH-A0B6-01 X 57619976 57619976 G A ZXDB Missense_Mutation p.E499K 0.09 deleterious(0) possibly_damaging(0.907) TCGA-BH-A0B6-01 X 66937361 66937361 C T AR Nonsense_Mutation p.Q739* 0.22 TCGA-BH-A0B6-01 X 68381728 68381728 C G PJA1 Missense_Mutation p.E452Q 0.16 tolerated(0.05) benign(0.285) TCGA-BH-A0B6-01 X 69282995 69282995 C T OTUD6A Silent p.C207C 0.24 TCGA-BH-A0B6-01 X 70749751 70749751 G A OGT 5'Flank 0.27 TCGA-BH-A0B6-01 X 72092292 72092292 C G DMRTC1 Missense_Mutation p.L191F 0.08 tolerated(0.17) possibly_damaging(0.593) TCGA-BH-A0B6-01 X 73068515 73068515 G C XIST RNA 0.17 TCGA-BH-A0B6-01 X 76937961 76937961 C G ATRX Missense_Mutation p.Q929H 0.17 benign(0.081) TCGA-BH-A0B6-01 X 77359848 77359848 C G PGK1 Missense_Mutation p.S4C 0.12 deleterious(0.01) benign(0.003) TCGA-BH-A0B6-01 X 7811638 7811638 G A VCX Missense_Mutation p.E68K 0.14 tolerated(0.21) unknown(0) TCGA-BH-A0B6-01 X 78616847 78616847 G C ITM2A Missense_Mutation p.R228G 0.10 deleterious(0.02) benign(0.068) TCGA-BH-A0B6-01 X 79959038 79959038 G CACTA BRWD3 Nonsense_Mutation p.Q926* 0.10 TCGA-BH-A0B6-01 X 8138291 8138291 C T VCX2 Missense_Mutation p.E68K 0.13 tolerated_low_confidence(0.06) unknown(0) TCGA-BH-A0B6-01 X 8763154 8763154 C G FAM9A Missense_Mutation p.E266Q 0.14 tolerated_low_confidence(0.42) unknown(0) TCGA-BH-A0B7-01 10 64946067 64946067 C - JMJD1C Frame_Shift_Del p.G2216Efs*8 0.08 TCGA-BH-A0B7-01 11 6629343 6629343 T C ILK Silent p.L53L 0.09 TCGA-BH-A0B7-01 11 73670628 73670628 A C DNAJB13 Missense_Mutation p.T88P 0.05 tolerated(0.3) benign(0) TCGA-BH-A0B7-01 13 23910597 23910597 C G SACS Missense_Mutation p.W2473S 0.12 probably_damaging(0.998) TCGA-BH-A0B7-01 15 42944775 42944775 G A STARD9 Silent p.T229T 0.10 TCGA-BH-A0B7-01 16 50788237 50788237 C T CYLD Missense_Mutation p.P272L 0.08 deleterious(0) probably_damaging(0.971) TCGA-BH-A0B7-01 16 52473079 52473079 C G TOX3 3'UTR 0.10 TCGA-BH-A0B7-01 16 88697547 88697547 A G ZC3H18 Missense_Mutation p.K901R 0.09 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-BH-A0B7-01 17 42254868 42254868 G C ASB16 Intron 0.11 TCGA-BH-A0B7-01 17 43362246 43362246 C G MAP3K14 RNA 0.09 TCGA-BH-A0B7-01 17 505056 505056 C T VPS53 Silent p.T399T 0.11 TCGA-BH-A0B7-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.31 TCGA-BH-A0B7-01 17 79826828 79826828 C T ARHGDIA Missense_Mutation p.R180H 0.06 tolerated(0.46) benign(0.223) TCGA-BH-A0B7-01 18 52928746 52928746 G A TCF4 Missense_Mutation p.A416V 0.13 tolerated(0.18) benign(0.18) TCGA-BH-A0B7-01 1 152191571 152191571 C G HRNR Missense_Mutation p.G845A 0.13 unknown(0) TCGA-BH-A0B7-01 1 16451713 16451713 G C EPHA2 Missense_Mutation p.I976M 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.64) TCGA-BH-A0B7-01 1 17575607 17575607 C T PADI3 5'UTR 0.12 TCGA-BH-A0B7-01 1 186310407 186310407 C T TPR Missense_Mutation p.D1289N 0.07 possibly_damaging(0.539) TCGA-BH-A0B7-01 1 32256313 32256313 C T SPOCD1 Missense_Mutation p.R1181H 0.10 tolerated(0.57) benign(0) TCGA-BH-A0B7-01 1 64624790 64624790 C T ROR1 Missense_Mutation p.S434L 0.11 tolerated(0.06) benign(0.044) TCGA-BH-A0B7-01 1 78601341 78601341 G A GIPC2 Missense_Mutation p.E288K 0.05 tolerated(0.22) benign(0.019) TCGA-BH-A0B7-01 21 32617864 32617864 G A TIAM1 Silent p.H508H 0.12 TCGA-BH-A0B7-01 2 10914963 10914963 C T ATP6V1C2 Nonsense_Mutation p.R230* 0.09 TCGA-BH-A0B7-01 2 113514428 113514428 C T CKAP2L Missense_Mutation p.E174K 0.08 tolerated(0.35) benign(0.012) TCGA-BH-A0B7-01 3 13377006 13377006 G A NUP210 Missense_Mutation p.S1264L 0.08 deleterious(0.01) benign(0.002) TCGA-BH-A0B7-01 3 151073819 151073819 G A MED12L Missense_Mutation p.A850T 0.08 deleterious(0.02) benign(0.042) TCGA-BH-A0B7-01 3 151161292 151161292 G A IGSF10 Missense_Mutation p.R1815C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BH-A0B7-01 4 156784660 156784660 A G ASIC5 Missense_Mutation p.I96T 0.05 tolerated(0.05) possibly_damaging(0.644) TCGA-BH-A0B7-01 5 140810665 140810665 A C PCDHGA12 Missense_Mutation p.K113N 0.19 deleterious_low_confidence(0.02) benign(0.043) TCGA-BH-A0B7-01 5 146795332 146795332 C G DPYSL3 Missense_Mutation p.D254H 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0B7-01 6 136977594 136977594 G A MAP3K5 Missense_Mutation p.L511F 0.07 deleterious(0) possibly_damaging(0.65) TCGA-BH-A0B7-01 6 170626995 170626995 C T FAM120B Missense_Mutation p.L173F 0.08 deleterious(0) probably_damaging(0.962) TCGA-BH-A0B7-01 7 143039563 143039563 C G CLCN1 Missense_Mutation p.T632S 0.09 tolerated(0.26) possibly_damaging(0.679) TCGA-BH-A0B7-01 7 143079684 143079684 A C ZYX Splice_Site p.X137_splice 0.04 TCGA-BH-A0B7-01 7 18630101 18630101 G C HDAC9 Missense_Mutation p.G136A 0.10 deleterious(0.04) benign(0.297) TCGA-BH-A0B7-01 7 65705728 65705728 C T TPST1 Nonsense_Mutation p.R106* 0.15 TCGA-BH-A0B7-01 7 71743768 71743768 G A CALN1 Silent p.T49T 0.14 TCGA-BH-A0B7-01 7 94214792 94214792 T C SGCE 3'UTR 0.08 TCGA-BH-A0B7-01 9 100899936 100899936 C A CORO2A Missense_Mutation p.C79F 0.07 deleterious(0.01) probably_damaging(0.934) TCGA-BH-A0B7-01 9 23731079 23731079 C T ELAVL2 Missense_Mutation p.D92N 0.09 deleterious(0) possibly_damaging(0.867) TCGA-BH-A0B7-01 9 23731088 23731088 C T ELAVL2 Missense_Mutation p.D89N 0.09 tolerated(0.68) benign(0.003) TCGA-BH-A0B7-01 X 119077341 119077341 C T NKAP Silent p.S76S 0.12 TCGA-BH-A0B7-01 X 31747778 31747778 G C DMD Missense_Mutation p.Q2544E 0.06 benign(0.092) TCGA-BH-A0B8-01 10 99655737 99655737 C T CRTAC1 Missense_Mutation p.V408M 0.08 deleterious(0.01) possibly_damaging(0.569) TCGA-BH-A0B8-01 11 121000883 121000883 C T TECTA Silent p.D968D 0.10 TCGA-BH-A0B8-01 12 13233613 13233613 C T KIAA1467 3'UTR 0.06 TCGA-BH-A0B8-01 12 90010705 90010705 G A ATP2B1 Silent p.T647T 0.05 TCGA-BH-A0B8-01 14 72176044 72176044 G A SIPA1L1 Missense_Mutation p.E1312K 0.05 deleterious(0.01) benign(0.16) TCGA-BH-A0B8-01 17 16526212 16526212 G A ZNF624 Missense_Mutation p.T663I 0.04 deleterious(0) probably_damaging(0.997) TCGA-BH-A0B8-01 17 3100861 3100861 G C OR1A2 Missense_Mutation p.V17L 0.03 tolerated(1) benign(0.008) TCGA-BH-A0B8-01 19 15375541 15375541 T G BRD4 Missense_Mutation p.T296P 0.35 possibly_damaging(0.507) TCGA-BH-A0B8-01 19 37879753 37879753 C T ZNF527 Missense_Mutation p.H268Y 0.39 deleterious(0.03) benign(0.207) TCGA-BH-A0B8-01 19 49216400 49216400 G A MAMSTR 3'UTR 0.12 TCGA-BH-A0B8-01 19 57840551 57840551 C T ZNF543 Missense_Mutation p.T574I 0.03 deleterious(0.05) benign(0.059) TCGA-BH-A0B8-01 19 8530247 8530247 G T HNRNPM Missense_Mutation p.V160L 0.03 tolerated(0.67) benign(0.057) TCGA-BH-A0B8-01 1 120484266 120484266 C T NOTCH2 Missense_Mutation p.S955N 0.05 deleterious(0) benign(0.094) TCGA-BH-A0B8-01 1 16735695 16735695 C T SPATA21 Silent p.Q197Q 0.06 TCGA-BH-A0B8-01 1 20517148 20517148 C T UBXN10 Silent p.L32L 0.04 TCGA-BH-A0B8-01 1 248685620 248685620 G T OR2G6 Missense_Mutation p.V225L 0.38 deleterious(0.01) benign(0.248) TCGA-BH-A0B8-01 1 249141669 249141669 G A ZNF672 Missense_Mutation p.G66S 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A0B8-01 20 54824591 54824591 C T MC3R Missense_Mutation p.A231V 0.08 tolerated(0.44) possibly_damaging(0.848) TCGA-BH-A0B8-01 21 30934104 30934104 C G GRIK1 Missense_Mutation p.V733L 0.07 deleterious(0) possibly_damaging(0.585) TCGA-BH-A0B8-01 2 192700907 192700907 C T SDPR Silent p.A340A 0.32 TCGA-BH-A0B8-01 2 228551948 228551948 G A SLC19A3 3'UTR 0.15 TCGA-BH-A0B8-01 2 85857882 85857882 G A USP39 Silent p.L254L 0.07 TCGA-BH-A0B8-01 3 152058516 152058516 G A TMEM14E Missense_Mutation p.P60S 0.03 tolerated_low_confidence(0.05) benign(0.023) TCGA-BH-A0B8-01 3 195486094 195486094 C T MUC4 Missense_Mutation p.E4963K 0.16 benign(0.092) TCGA-BH-A0B8-01 3 196050763 196050763 C T TM4SF19 Silent p.L185L 0.05 TCGA-BH-A0B8-01 4 90856872 90856872 C A MMRN1 Missense_Mutation p.L681M 0.08 deleterious(0.03) benign(0.311) TCGA-BH-A0B8-01 5 133896481 133896481 A G JADE2 Missense_Mutation p.E173G 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A0B8-01 5 180420116 180420116 C A BTNL3 Missense_Mutation p.S118Y 0.20 deleterious(0.01) probably_damaging(1) TCGA-BH-A0B8-01 5 223678 223678 G A SDHA Missense_Mutation p.D49N 0.05 tolerated_low_confidence(0.27) benign(0.001) TCGA-BH-A0B8-01 6 138656238 138656238 G A KIAA1244 Silent p.E2085E 0.09 TCGA-BH-A0B8-01 7 128852230 128852230 C T SMO Missense_Mutation p.P768S 0.19 tolerated_low_confidence(0.07) benign(0.048) TCGA-BH-A0B8-01 7 143701299 143701299 G A OR6B1 Silent p.E70E 0.07 TCGA-BH-A0B8-01 8 27729467 27729467 G T SCARA5 Missense_Mutation p.T491K 0.07 tolerated(0.38) benign(0.005) TCGA-BH-A0B8-01 X 119293081 119293081 C T RHOXF2 Silent p.G80G 0.12 TCGA-BH-A0BA-01 11 18105265 18105281 TAGAGGAAGATCTACTG - SAAL1 Splice_Site p.X348_splice 0.45 TCGA-BH-A0BA-01 12 29485538 29485538 C T FAR2 Silent p.F421F 0.06 TCGA-BH-A0BA-01 14 102931569 102931569 G A TECPR2 Silent p.Q1244Q 0.05 TCGA-BH-A0BA-01 16 26147359 26147359 T C HS3ST4 Silent p.Y387Y 0.43 TCGA-BH-A0BA-01 18 14848786 14848786 A C ANKRD30B Missense_Mutation p.N966H 0.08 tolerated(1) benign(0.001) TCGA-BH-A0BA-01 19 12089558 12089558 A T ZNF763 Silent p.A276A 0.04 TCGA-BH-A0BA-01 19 44500743 44500743 C T ZNF155 Missense_Mutation p.S256L 0.03 deleterious(0.04) possibly_damaging(0.767) TCGA-BH-A0BA-01 19 52570087 52570087 A C ZNF841 Missense_Mutation p.C350G 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0BA-01 1 151377585 151377585 A G POGZ Missense_Mutation p.L1309P 0.27 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BA-01 1 152659368 152659368 C A LCE2B Missense_Mutation p.P17T 0.51 deleterious_low_confidence(0.04) unknown(0) TCGA-BH-A0BA-01 1 240975222 240975222 A C RGS7 Missense_Mutation p.L360V 0.28 deleterious(0) probably_damaging(0.988) TCGA-BH-A0BA-01 1 248084415 248084415 C T OR2T8 Silent p.I32I 0.03 TCGA-BH-A0BA-01 1 94995992 94995992 G A F3 3'UTR 0.06 TCGA-BH-A0BA-01 20 14306872 14306872 C T FLRT3 Nonsense_Mutation p.W427* 0.04 TCGA-BH-A0BA-01 21 38884543 38884543 A G DYRK1A Silent p.T667T 0.21 TCGA-BH-A0BA-01 21 46000198 46000198 C G KRTAP10-5 Missense_Mutation p.Q86H 0.37 deleterious(0.03) unknown(0) TCGA-BH-A0BA-01 2 130831831 130831831 G A POTEF Missense_Mutation p.R1072C 0.51 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-BH-A0BA-01 2 133175212 133175212 C T GPR39 Silent p.H199H 0.18 TCGA-BH-A0BA-01 3 134920392 134920392 C A EPHB1 Missense_Mutation p.A736D 0.41 deleterious(0.01) benign(0.052) TCGA-BH-A0BA-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.38 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0BA-01 3 185986591 185986591 G A DGKG Missense_Mutation p.T372M 0.52 tolerated(0.26) probably_damaging(0.993) TCGA-BH-A0BA-01 4 90816310 90816310 C T MMRN1 Missense_Mutation p.A63V 0.39 tolerated_low_confidence(0.35) benign(0.004) TCGA-BH-A0BA-01 4 91549304 91549304 C G CCSER1 Missense_Mutation p.S618C 0.06 deleterious(0.01) possibly_damaging(0.73) TCGA-BH-A0BA-01 5 140530408 140530408 C - PCDHB6 Frame_Shift_Del p.P191Rfs*5 0.25 TCGA-BH-A0BA-01 5 151175057 151175057 G C G3BP1 Missense_Mutation p.E154Q 0.04 deleterious(0.02) benign(0.14) TCGA-BH-A0BA-01 6 116544201 116544201 G A NT5DC1 Missense_Mutation p.D237N 0.44 deleterious(0.03) benign(0.246) TCGA-BH-A0BA-01 6 43550189 43550189 G A POLH Missense_Mutation p.G45S 0.04 deleterious(0) probably_damaging(0.922) TCGA-BH-A0BA-01 6 79911232 79911232 G C HMGN3 3'UTR 0.17 TCGA-BH-A0BA-01 7 48352730 48352730 G A ABCA13 Missense_Mutation p.A3195T 0.31 benign(0.001) TCGA-BH-A0BA-01 9 100899927 100899927 C T CORO2A Missense_Mutation p.R82K 0.09 tolerated(1) benign(0.014) TCGA-BH-A0BA-01 X 63412049 63412049 G A AMER1 Missense_Mutation p.A373V 0.57 deleterious(0) probably_damaging(1) TCGA-BH-A0BC-01 10 43015259 43015259 G A ZNF37BP RNA 0.23 TCGA-BH-A0BC-01 11 105481610 105481610 T G GRIA4 Intron 0.15 TCGA-BH-A0BC-01 11 122722537 122722537 G A CRTAM Silent p.V110V 0.05 TCGA-BH-A0BC-01 11 14840747 14840747 G C PDE3B Missense_Mutation p.G600A 0.02 tolerated(0.7) benign(0.044) TCGA-BH-A0BC-01 11 94532836 94532836 G A AMOTL1 Silent p.P160P 0.17 TCGA-BH-A0BC-01 12 119583290 119583290 C T SRRM4 Silent p.S292S 0.37 TCGA-BH-A0BC-01 12 56349111 56349111 G A PMEL Silent p.I606I 0.24 TCGA-BH-A0BC-01 12 81545639 81545639 C T ACSS3 Missense_Mutation p.T313I 0.28 tolerated(0.1) possibly_damaging(0.895) TCGA-BH-A0BC-01 15 52620094 52620094 C T MYO5A Silent p.R1530R 0.24 TCGA-BH-A0BC-01 15 54556502 54556502 T A UNC13C Silent p.I1195I 0.28 TCGA-BH-A0BC-01 15 90349393 90349393 C T ANPEP Missense_Mutation p.G141D 0.23 tolerated(0.21) benign(0.006) TCGA-BH-A0BC-01 17 34264775 34264775 G A LYZL6 Silent p.H95H 0.42 TCGA-BH-A0BC-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A0BC-01 19 14991969 14991969 A G OR7A17 Missense_Mutation p.S67P 0.04 deleterious_low_confidence(0) benign(0.242) TCGA-BH-A0BC-01 19 35175889 35175889 G A ZNF302 Missense_Mutation p.R316H 0.06 tolerated(0.11) benign(0.009) TCGA-BH-A0BC-01 19 53612661 53612661 C A ZNF415 Nonsense_Mutation p.E213* 0.23 TCGA-BH-A0BC-01 1 111724830 111724830 A T CEPT1 Missense_Mutation p.M246L 0.25 tolerated(1) benign(0.004) TCGA-BH-A0BC-01 1 161475284 161475284 G A FCGR2A Silent p.Q9Q 0.22 TCGA-BH-A0BC-01 1 19464532 19464532 C G UBR4 Missense_Mutation p.E2959Q 0.11 possibly_damaging(0.709) TCGA-BH-A0BC-01 1 247079596 247079596 C A AHCTF1 Nonsense_Mutation p.E84* 0.19 TCGA-BH-A0BC-01 1 35656463 35656463 T C SFPQ Missense_Mutation p.N384S 0.29 deleterious(0.02) possibly_damaging(0.672) TCGA-BH-A0BC-01 1 52211285 52211285 C T OSBPL9 Silent p.I155I 0.07 TCGA-BH-A0BC-01 1 94048293 94048293 C T BCAR3 Silent p.S417S 0.25 TCGA-BH-A0BC-01 22 17450868 17450868 C G GAB4 Missense_Mutation p.R301T 0.35 tolerated(0.09) possibly_damaging(0.587) TCGA-BH-A0BC-01 22 46712235 46712235 A T GTSE1 Missense_Mutation p.D453V 0.33 deleterious(0) probably_damaging(0.968) TCGA-BH-A0BC-01 2 116572515 116572515 A T DPP10 Missense_Mutation p.H620L 0.22 tolerated(0.38) benign(0.312) TCGA-BH-A0BC-01 2 84774677 84774677 G A DNAH6 Missense_Mutation p.R376Q 0.04 tolerated(0.31) benign(0.002) TCGA-BH-A0BC-01 2 88390554 88390554 C T SMYD1 Silent p.L184L 0.32 TCGA-BH-A0BC-01 3 108549621 108549621 C T TRAT1 Nonsense_Mutation p.R38* 0.29 TCGA-BH-A0BC-01 3 108677767 108677767 C T MORC1 3'UTR 0.08 TCGA-BH-A0BC-01 3 136136813 136136813 C G STAG1 Missense_Mutation p.A704P 0.24 deleterious(0) probably_damaging(0.939) TCGA-BH-A0BC-01 3 139077630 139077632 CCA TG COPB2 Frame_Shift_Del p.M836Tfs*45 0.20 TCGA-BH-A0BC-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.43 tolerated(0.44) benign(0.085) TCGA-BH-A0BC-01 3 19974913 19974913 C T EFHB Missense_Mutation p.E200K 0.06 deleterious_low_confidence(0.04) benign(0.005) TCGA-BH-A0BC-01 3 39136217 39136217 C T WDR48 Missense_Mutation p.R673C 0.25 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BC-01 4 30725361 30725361 G A PCDH7 Missense_Mutation p.D773N 0.22 deleterious(0.03) benign(0.002) TCGA-BH-A0BC-01 5 140731309 140731309 G A PCDHGB1 Silent p.P494P 0.62 TCGA-BH-A0BC-01 5 88018447 88018447 G A MEF2C Nonsense_Mutation p.R476* 0.31 TCGA-BH-A0BC-01 6 46657115 46657115 A G TDRD6 Missense_Mutation p.H417R 0.22 deleterious(0.05) benign(0.049) TCGA-BH-A0BC-01 6 47846099 47846099 C T PTCHD4 Silent p.E827E 0.05 TCGA-BH-A0BC-01 7 141759305 141759305 C T MGAM Missense_Mutation p.R1285W 0.25 deleterious(0) probably_damaging(0.991) TCGA-BH-A0BC-01 8 106431410 106431410 T A ZFPM2 Missense_Mutation p.C27S 0.35 tolerated(0.72) benign(0.292) TCGA-BH-A0BC-01 8 26484190 26484190 G A DPYSL2 Missense_Mutation p.C179Y 0.25 deleterious(0.04) benign(0.031) TCGA-BH-A0BC-01 9 134109011 134109011 A T NUP214 3'UTR 0.28 TCGA-BH-A0BC-01 9 5164167 5164167 C T INSL6 Missense_Mutation p.E130K 0.04 tolerated(0.34) possibly_damaging(0.874) TCGA-BH-A0BC-01 X 73960320 73960320 C T KIAA2022 Missense_Mutation p.E1358K 0.05 deleterious(0.01) possibly_damaging(0.732) TCGA-BH-A0BF-01 11 118486917 118486917 C A PHLDB1 Missense_Mutation p.L116I 0.32 deleterious(0) probably_damaging(0.995) TCGA-BH-A0BF-01 11 2434145 2434145 C T TRPM5 Missense_Mutation p.V732M 0.25 deleterious(0) probably_damaging(0.991) TCGA-BH-A0BF-01 12 56721335 56721335 C A PAN2 Silent p.V244V 0.21 TCGA-BH-A0BF-01 13 48562822 48562822 C T SUCLA2 Missense_Mutation p.A130T 0.19 tolerated(0.28) benign(0.027) TCGA-BH-A0BF-01 15 78894311 78894311 C T CHRNA3 Missense_Mutation p.E225K 0.17 tolerated(0.15) possibly_damaging(0.746) TCGA-BH-A0BF-01 16 53526429 53526431 CTT - AKTIP In_Frame_Del p.K258del 0.10 TCGA-BH-A0BF-01 17 26680331 26680331 A C POLDIP2 Silent p.S149S 0.22 TCGA-BH-A0BF-01 17 38935976 38935976 G A KRT27 Silent p.D274D 0.24 TCGA-BH-A0BF-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.26 deleterious(0) probably_damaging(1) TCGA-BH-A0BF-01 18 44627466 44627466 G C KATNAL2 3'UTR 0.41 TCGA-BH-A0BF-01 19 22170078 22170078 G C ZNF208 Missense_Mutation p.L56V 0.19 deleterious(0.02) possibly_damaging(0.722) TCGA-BH-A0BF-01 19 45997923 45997923 C T RTN2 Silent p.L140L 0.19 TCGA-BH-A0BF-01 19 56320679 56320679 C T NLRP11 Missense_Mutation p.A433T 0.07 tolerated(0.22) benign(0.003) TCGA-BH-A0BF-01 1 20964471 20964471 T C PINK1 Missense_Mutation p.M175T 0.16 tolerated(0.29) benign(0.002) TCGA-BH-A0BF-01 1 209781258 209781258 C T CAMK1G Silent p.I205I 0.35 TCGA-BH-A0BF-01 1 32794710 32794710 C T HDAC1 Silent p.Y226Y 0.11 TCGA-BH-A0BF-01 1 62673212 62673212 C T L1TD1 Silent p.S304S 0.20 TCGA-BH-A0BF-01 1 90399471 90399471 G C LRRC8D Missense_Mutation p.E282Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BF-01 20 33581196 33581196 C T MYH7B Silent p.A831A 0.25 TCGA-BH-A0BF-01 20 42311462 42311462 G A MYBL2 Missense_Mutation p.R72K 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A0BF-01 2 144525681 144525681 C T ARHGAP15 Silent p.N456N 0.19 TCGA-BH-A0BF-01 2 179647587 179647587 T C TTN Missense_Mutation p.S1016G 0.24 TCGA-BH-A0BF-01 2 239057685 239057685 G T KLHL30 Missense_Mutation p.K459N 0.22 deleterious(0.03) probably_damaging(0.938) TCGA-BH-A0BF-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.22 deleterious(0.01) probably_damaging(1) TCGA-BH-A0BF-01 5 60199504 60199504 T C ERCC8 Missense_Mutation p.K174R 0.16 tolerated(0.38) benign(0.001) TCGA-BH-A0BF-01 6 17669532 17669532 G C NUP153 Missense_Mutation p.L336V 0.21 deleterious(0.04) possibly_damaging(0.838) TCGA-BH-A0BF-01 6 42976144 42976144 C T PPP2R5D Silent p.H319H 0.25 TCGA-BH-A0BF-01 6 43141698 43141698 G C SRF Missense_Mutation p.E209D 0.18 tolerated(0.14) benign(0.001) TCGA-BH-A0BF-01 6 56473721 56473721 A T DST Intron 0.07 TCGA-BH-A0BF-01 7 5644991 5644991 C T FSCN1 Silent p.C456C 0.17 TCGA-BH-A0BF-01 7 81392029 81392029 G C HGF Missense_Mutation p.T83S 0.15 tolerated(0.35) benign(0.005) TCGA-BH-A0BF-01 7 91503433 91503433 C G MTERF Missense_Mutation p.L225F 0.22 deleterious(0.03) possibly_damaging(0.642) TCGA-BH-A0BF-01 8 86157964 86157966 CCG - CA13 5'UTR 0.17 TCGA-BH-A0BF-01 9 136131416 136131416 G A RP11-430N14.4 5'Flank 0.50 TCGA-BH-A0BF-01 X 44386496 44386498 TTG - FUNDC1 In_Frame_Del p.N126del 0.28 TCGA-BH-A0BF-01 X 71813106 71813106 T A PHKA1 Missense_Mutation p.T1031S 0.27 tolerated(0.92) benign(0) TCGA-BH-A0BG-01 10 15256057 15256057 T C FAM171A1 Silent p.G510G 0.33 TCGA-BH-A0BG-01 11 124947362 124947362 G C SLC37A2 Missense_Mutation p.K84N 0.54 tolerated(0.22) benign(0.029) TCGA-BH-A0BG-01 11 55406228 55406228 T A OR4P4 Missense_Mutation p.I132N 0.14 deleterious(0.02) benign(0.14) TCGA-BH-A0BG-01 11 62677587 62677587 G C CHRM1 Missense_Mutation p.P329R 0.19 tolerated(0.19) possibly_damaging(0.638) TCGA-BH-A0BG-01 11 67017917 67017917 C A KDM2A Missense_Mutation p.P806T 0.17 tolerated(0.07) benign(0.342) TCGA-BH-A0BG-01 11 8950998 8950998 C A C11orf16 Missense_Mutation p.A84S 0.19 tolerated(0.28) possibly_damaging(0.722) TCGA-BH-A0BG-01 12 21069246 21069246 C A SLCO1B3 3'UTR 0.41 TCGA-BH-A0BG-01 12 80658942 80658942 G A OTOGL Missense_Mutation p.G717S 0.37 tolerated(0.43) benign(0.012) TCGA-BH-A0BG-01 13 21382693 21382693 G C XPO4 Silent p.L507L 0.36 TCGA-BH-A0BG-01 13 60240935 60240935 T C DIAPH3 Missense_Mutation p.N1122S 0.39 tolerated_low_confidence(0.28) benign(0.002) TCGA-BH-A0BG-01 16 29997097 29997097 G A TAOK2 Missense_Mutation p.R636H 0.36 deleterious(0.02) possibly_damaging(0.877) TCGA-BH-A0BG-01 16 88501728 88501728 G C ZNF469 Missense_Mutation p.R2589P 0.38 benign(0.415) TCGA-BH-A0BG-01 17 15134333 15134333 C T PMP22 Silent p.S128S 0.74 TCGA-BH-A0BG-01 17 38187823 38187823 G A MED24 Silent p.T345T 0.65 TCGA-BH-A0BG-01 17 6684022 6684022 C A FBXO39 Missense_Mutation p.Q279K 0.24 tolerated(0.72) benign(0.001) TCGA-BH-A0BG-01 17 7578246 7578247 - A TP53 Frame_Shift_Ins p.L201Ffs*8 0.50 TCGA-BH-A0BG-01 19 24310770 24310770 C G ZNF254 Missense_Mutation p.I656M 0.41 tolerated(0.12) benign(0.06) TCGA-BH-A0BG-01 19 52518871 52518871 G C ZNF614 3'UTR 0.43 TCGA-BH-A0BG-01 1 16043237 16043237 T C PLEKHM2 Missense_Mutation p.V68A 0.19 tolerated(0.1) probably_damaging(0.93) TCGA-BH-A0BG-01 1 214794222 214794222 T C CENPF Silent p.A266A 0.52 TCGA-BH-A0BG-01 1 22176924 22176924 A C HSPG2 Missense_Mutation p.V2409G 0.46 probably_damaging(0.94) TCGA-BH-A0BG-01 1 233397811 233397811 G A PCNXL2 Missense_Mutation p.H154Y 0.15 tolerated(0.05) benign(0.232) TCGA-BH-A0BG-01 1 236918367 236918367 A C ACTN2 Missense_Mutation p.M675L 0.17 tolerated(1) benign(0.023) TCGA-BH-A0BG-01 1 91406655 91406655 C T ZNF644 Missense_Mutation p.A86T 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A0BG-01 21 45479068 45479068 C T TRAPPC10 Nonsense_Mutation p.Q255* 0.32 TCGA-BH-A0BG-01 2 141122329 141122329 C T LRP1B Missense_Mutation p.E3678K 0.09 possibly_damaging(0.621) TCGA-BH-A0BG-01 2 150327533 150327533 G T LYPD6 3'UTR 0.16 TCGA-BH-A0BG-01 2 179443676 179443676 C T TTN Missense_Mutation p.C22694Y 0.35 TCGA-BH-A0BG-01 2 191874683 191874684 - CCAGGC STAT1 In_Frame_Ins p.L15_E16insGL 0.39 TCGA-BH-A0BG-01 2 91805951 91805951 G T AC116050.1 Intron 0.31 TCGA-BH-A0BG-01 2 91806098 91806098 G C AC116050.1 Intron 0.15 TCGA-BH-A0BG-01 3 26751689 26751689 G A LRRC3B Missense_Mutation p.V176M 0.10 tolerated(0.09) benign(0.302) TCGA-BH-A0BG-01 3 40291713 40291713 A G MYRIP Missense_Mutation p.I755V 0.54 tolerated(0.34) probably_damaging(0.997) TCGA-BH-A0BG-01 3 49211701 49211701 G A KLHDC8B Missense_Mutation p.G136S 0.51 tolerated(0.07) probably_damaging(0.926) TCGA-BH-A0BG-01 4 184367676 184367676 C T CDKN2AIP Missense_Mutation p.S280L 0.20 tolerated(0.19) unknown(0) TCGA-BH-A0BG-01 5 129520027 129520027 A T CHSY3 Missense_Mutation p.R398W 0.62 deleterious(0) probably_damaging(0.968) TCGA-BH-A0BG-01 5 149826455 149826455 G C RPS14 Missense_Mutation p.A74G 0.52 deleterious(0.01) possibly_damaging(0.802) TCGA-BH-A0BG-01 5 171482634 171482634 G T STK10 Missense_Mutation p.N828K 0.38 tolerated(0.09) possibly_damaging(0.574) TCGA-BH-A0BG-01 6 44274746 44274746 G A AARS2 Missense_Mutation p.R355C 0.25 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BG-01 7 100170027 100170027 G C SAP25 Silent p.S161S 0.18 TCGA-BH-A0BG-01 7 121018965 121018965 A C FAM3C Missense_Mutation p.F39L 0.28 tolerated(0.39) benign(0.008) TCGA-BH-A0BG-01 8 11710144 11710144 G A CTSB Silent p.L63L 0.25 TCGA-BH-A0BG-01 8 136619254 136619254 T A KHDRBS3 Missense_Mutation p.D288E 0.11 tolerated(0.61) benign(0.004) TCGA-BH-A0BG-01 8 56435907 56435907 G A XKR4 Silent p.R358R 0.36 TCGA-BH-A0BG-01 9 7011799 7011799 G T KDM4C Missense_Mutation p.A630S 0.63 deleterious(0.01) possibly_damaging(0.773) TCGA-BH-A0BG-01 X 48819835 48819835 C A KCND1 3'UTR 0.50 TCGA-BH-A0BG-01 X 54099576 54099576 C G FAM120C Missense_Mutation p.D1061H 0.49 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-BH-A0BJ-01 11 1093822 1093822 C T MUC2 Missense_Mutation p.P1881S 0.08 unknown(0) TCGA-BH-A0BJ-01 11 123894588 123894588 G A OR10G9 Missense_Mutation p.R290K 0.23 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BJ-01 11 26720081 26720081 C T SLC5A12 Missense_Mutation p.A275T 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0BJ-01 11 64897307 64897307 G A SYVN1 Missense_Mutation p.R497W 0.22 deleterious(0) unknown(0) TCGA-BH-A0BJ-01 12 56510574 56510574 G T RPL41 Translation_Start_Site p.M1? 0.05 unknown(0) TCGA-BH-A0BJ-01 13 39266380 39266380 T A FREM2 Missense_Mutation p.D1633E 0.34 tolerated(0.09) benign(0.002) TCGA-BH-A0BJ-01 1 173822631 173822631 C G DARS2 Missense_Mutation p.L497V 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-BH-A0BJ-01 20 34078523 34078524 - A CEP250 Frame_Shift_Ins p.M885Nfs*106 0.12 TCGA-BH-A0BJ-01 22 26860722 26860722 C A HPS4 Missense_Mutation p.A292S 0.20 tolerated(0.15) benign(0.328) TCGA-BH-A0BJ-01 3 133478043 133478043 G T TF Missense_Mutation p.C358F 0.04 deleterious(0.05) possibly_damaging(0.507) TCGA-BH-A0BJ-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.12 deleterious(0.01) probably_damaging(1) TCGA-BH-A0BJ-01 4 187629098 187629098 T A FAT1 Silent p.R628R 0.05 TCGA-BH-A0BJ-01 5 110835685 110835685 T C STARD4 Missense_Mutation p.I173V 0.30 tolerated(0.14) benign(0.06) TCGA-BH-A0BJ-01 5 68412305 68412305 A G SLC30A5 Missense_Mutation p.N386S 0.07 tolerated(0.55) benign(0.039) TCGA-BH-A0BJ-01 7 142566019 142566019 G A EPHB6 Missense_Mutation p.D647N 0.08 deleterious(0) possibly_damaging(0.908) TCGA-BH-A0BJ-01 7 57528551 57528551 C A ZNF716 Nonsense_Mutation p.C128* 0.10 TCGA-BH-A0BJ-01 7 99474197 99474197 C T OR2AE1 Missense_Mutation p.V154M 0.10 tolerated(0.09) benign(0.082) TCGA-BH-A0BJ-01 X 106184700 106184700 G A MORC4 3'UTR 0.07 TCGA-BH-A0BL-01 10 27551930 27551930 T G ARMC4P1 RNA 0.17 TCGA-BH-A0BL-01 10 75264684 75264684 A G USP54 Missense_Mutation p.L1412S 0.26 deleterious(0) benign(0.016) TCGA-BH-A0BL-01 10 96495282 96495282 C A CYP2C18 3'UTR 0.08 TCGA-BH-A0BL-01 11 1253327 1253327 C G MUC5B Missense_Mutation p.Q594E 0.17 unknown(0) TCGA-BH-A0BL-01 11 6977547 6977547 A T ZNF215 Missense_Mutation p.S447C 0.10 deleterious(0.04) benign(0.436) TCGA-BH-A0BL-01 11 70224415 70224415 T G PPFIA1 Intron 0.17 TCGA-BH-A0BL-01 11 96117158 96117173 GAGATCTTTGTTTTGA - CCDC82 Frame_Shift_Del p.S247Vfs*48 0.13 TCGA-BH-A0BL-01 12 11183012 11183020 GATGAAGGC - TAS2R31 In_Frame_Del p.K305_S308delinsN 0.08 TCGA-BH-A0BL-01 12 56397550 56397550 T G SUOX Missense_Mutation p.M126R 0.29 deleterious(0) possibly_damaging(0.675) TCGA-BH-A0BL-01 12 8904625 8904625 C T RIMKLB Missense_Mutation p.T160M 0.20 deleterious(0.02) benign(0.137) TCGA-BH-A0BL-01 14 21058411 21058411 G C RNASE12 3'UTR 0.20 TCGA-BH-A0BL-01 14 23540555 23540555 G T ACIN1 Intron 0.08 TCGA-BH-A0BL-01 14 90744727 90744727 G A NRDE2 Missense_Mutation p.R1150W 0.33 deleterious(0) unknown(0) TCGA-BH-A0BL-01 15 60741135 60741135 A G NARG2 Silent p.P677P 0.35 TCGA-BH-A0BL-01 15 72338481 72338481 G C MYO9A Missense_Mutation p.Q142E 0.06 tolerated(0.07) possibly_damaging(0.884) TCGA-BH-A0BL-01 16 1129206 1129206 G A SSTR5 Missense_Mutation p.R113H 0.25 deleterious(0.02) probably_damaging(1) TCGA-BH-A0BL-01 16 20396021 20396021 G T PDILT Missense_Mutation p.P119T 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A0BL-01 16 58149339 58149339 C T C16orf80 Missense_Mutation p.R100H 0.30 tolerated(0.15) benign(0.112) TCGA-BH-A0BL-01 16 67424121 67424121 C A TPPP3 Missense_Mutation p.A163S 0.30 tolerated(0.12) benign(0.031) TCGA-BH-A0BL-01 16 70818087 70818087 T G VAC14 Missense_Mutation p.S175R 0.13 tolerated(0.11) benign(0.247) TCGA-BH-A0BL-01 16 70900083 70900083 G T HYDIN Silent p.T3820T 0.25 TCGA-BH-A0BL-01 16 70954676 70954676 G C HYDIN Missense_Mutation p.R2535G 0.20 possibly_damaging(0.858) TCGA-BH-A0BL-01 17 1630714 1630714 G A WDR81 Missense_Mutation p.V821M 0.33 tolerated(0.14) benign(0.038) TCGA-BH-A0BL-01 17 53398125 53398125 C T HLF Missense_Mutation p.S258L 0.37 deleterious(0) possibly_damaging(0.558) TCGA-BH-A0BL-01 17 7578478 7578478 G T TP53 Missense_Mutation p.P151H 0.28 deleterious(0) possibly_damaging(0.773) TCGA-BH-A0BL-01 17 78403668 78403668 C G ENDOV Intron 0.26 TCGA-BH-A0BL-01 18 61064481 61064481 T G VPS4B Missense_Mutation p.E293A 0.18 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BL-01 19 40331123 40331123 G C FBL Missense_Mutation p.R72G 0.14 tolerated(0.88) benign(0.063) TCGA-BH-A0BL-01 19 55399555 55399555 T C FCAR Silent p.G181G 0.10 TCGA-BH-A0BL-01 1 11718332 11718332 G T FBXO44 Nonsense_Mutation p.E92* 0.30 TCGA-BH-A0BL-01 1 150325444 150325444 T A PRPF3 Missense_Mutation p.S681T 0.20 tolerated(0.49) benign(0.001) TCGA-BH-A0BL-01 1 1688152 1688152 C T NADK Intron 0.35 TCGA-BH-A0BL-01 1 20250034 20250034 G T PLA2G2E Missense_Mutation p.L7M 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-BH-A0BL-01 1 213058714 213058714 G A FLVCR1 Nonsense_Mutation p.W391* 0.22 TCGA-BH-A0BL-01 1 213058715 213058715 G T FLVCR1 Missense_Mutation p.W391C 0.22 deleterious(0) probably_damaging(0.971) TCGA-BH-A0BL-01 1 237889592 237889592 G A RYR2 Missense_Mutation p.R3570Q 0.41 benign(0) TCGA-BH-A0BL-01 1 67242936 67242936 T G TCTEX1D1 Silent p.V113V 0.11 TCGA-BH-A0BL-01 20 18522975 18522986 CATCCAGTTTGT - SEC23B In_Frame_Del p.I481_V484del 0.18 TCGA-BH-A0BL-01 22 21351225 21351225 C A LZTR1 Nonsense_Mutation p.C792* 0.67 TCGA-BH-A0BL-01 22 42483082 42483082 A C NDUFA6 Silent p.V105V 0.10 TCGA-BH-A0BL-01 2 108479240 108479240 C T RGPD4 Nonsense_Mutation p.R770* 0.43 TCGA-BH-A0BL-01 2 155555460 155555460 G T KCNJ3 Missense_Mutation p.G58V 0.23 tolerated(0.09) probably_damaging(0.954) TCGA-BH-A0BL-01 2 192225417 192225417 T G MYO1B Missense_Mutation p.F208C 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A0BL-01 2 223806218 223806218 G A ACSL3 Missense_Mutation p.S670N 0.24 tolerated(0.18) benign(0.001) TCGA-BH-A0BL-01 2 74884993 74884993 A G SEMA4F Missense_Mutation p.N124S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BL-01 2 9630344 9630344 G A ADAM17 Missense_Mutation p.R813C 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-BH-A0BL-01 3 121409630 121409630 G A GOLGB1 Nonsense_Mutation p.R2861* 0.17 TCGA-BH-A0BL-01 3 133379890 133379890 C T TOPBP1 Missense_Mutation p.E28K 0.18 deleterious(0.02) benign(0.132) TCGA-BH-A0BL-01 3 46717150 46717150 C A ALS2CL Missense_Mutation p.R738L 0.29 tolerated(0.1) benign(0.153) TCGA-BH-A0BL-01 4 142154959 142154959 A G ZNF330 Missense_Mutation p.D260G 0.23 tolerated_low_confidence(0.67) benign(0) TCGA-BH-A0BL-01 4 146560483 146560483 A C MMAA Missense_Mutation p.K64N 0.22 tolerated(0.37) benign(0.001) TCGA-BH-A0BL-01 4 47939288 47939288 G T CNGA1 Missense_Mutation p.A477E 0.24 deleterious(0.03) possibly_damaging(0.767) TCGA-BH-A0BL-01 5 39202164 39202164 T C FYB Missense_Mutation p.N310S 0.22 tolerated(0.64) benign(0.005) TCGA-BH-A0BL-01 6 132041440 132041440 T C ENPP3 Silent p.F496F 0.24 TCGA-BH-A0BL-01 6 136934362 136934362 C T MAP3K5 Missense_Mutation p.G771S 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0BL-01 6 7378890 7378890 G A CAGE1 Missense_Mutation p.S216F 0.03 deleterious(0.04) probably_damaging(0.983) TCGA-BH-A0BL-01 6 73904812 73904812 A G KCNQ5 Missense_Mutation p.D844G 0.21 tolerated_low_confidence(0.57) benign(0.026) TCGA-BH-A0BL-01 6 73951209 73951209 T C KHDC1 3'UTR 0.20 TCGA-BH-A0BL-01 7 100349832 100349832 G T ZAN Nonsense_Mutation p.E702* 0.25 TCGA-BH-A0BL-01 7 105915391 105915391 C A NAMPT Splice_Site p.X106_splice 0.27 TCGA-BH-A0BL-01 7 105915392 105915392 C G NAMPT Missense_Mutation p.E106D 0.27 tolerated(0.48) benign(0) TCGA-BH-A0BL-01 7 36633998 36633998 C G AOAH Missense_Mutation p.E295D 0.10 deleterious(0) probably_damaging(0.991) TCGA-BH-A0BL-01 7 96653899 96653899 G A DLX5 Nonsense_Mutation p.R13* 0.12 TCGA-BH-A0BL-01 8 113504808 113504808 C A CSMD3 Missense_Mutation p.G1730C 0.29 deleterious(0) probably_damaging(1) TCGA-BH-A0BL-01 8 145948698 145948698 G - ZNF251 Frame_Shift_Del p.P116Qfs*9 0.18 TCGA-BH-A0BL-01 8 49987844 49987844 C G C8orf22 3'UTR 0.05 TCGA-BH-A0BL-01 8 99142386 99142386 G C POP1 Missense_Mutation p.G223R 0.06 deleterious(0) probably_damaging(1) TCGA-BH-A0BL-01 9 113194255 113194255 C G SVEP1 Missense_Mutation p.D1765H 0.09 possibly_damaging(0.555) TCGA-BH-A0BL-01 9 130863453 130863453 G T SLC25A25 Nonsense_Mutation p.E114* 0.10 TCGA-BH-A0BL-01 9 84530613 84530613 C G SPATA31D5P RNA 0.21 TCGA-BH-A0BL-01 X 111155801 111155801 G A TRPC5 Silent p.P206P 0.08 TCGA-BH-A0BL-01 X 20185730 20185730 C T RPS6KA3 Missense_Mutation p.V527I 0.20 tolerated(0.07) benign(0.039) TCGA-BH-A0BL-01 X 24552117 24552117 G T PDK3 Silent p.T383T 0.28 TCGA-BH-A0BM-01 10 95720929 95720929 C A PIPSL RNA 0.12 TCGA-BH-A0BM-01 11 117651408 117651408 G A DSCAML1 Missense_Mutation p.A115V 0.43 tolerated(0.65) benign(0.436) TCGA-BH-A0BM-01 11 4409670 4409670 C T TRIM21 Missense_Mutation p.E199K 0.08 tolerated(1) benign(0) TCGA-BH-A0BM-01 12 117494613 117494613 G A TESC Silent p.N69N 0.24 TCGA-BH-A0BM-01 15 22997809 22997809 G A CYFIP1 Missense_Mutation p.V1019M 0.04 tolerated(0.08) benign(0.314) TCGA-BH-A0BM-01 17 14140095 14140095 C T CDRT15 Missense_Mutation p.S19N 0.32 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-BH-A0BM-01 17 33463230 33463230 C T NLE1 Silent p.Q323Q 0.28 TCGA-BH-A0BM-01 17 39645738 39645738 C A KRT36 Nonsense_Mutation p.E127* 0.33 TCGA-BH-A0BM-01 17 62496266 62496266 G - DDX5 Frame_Shift_Del p.Y540* 0.23 TCGA-BH-A0BM-01 20 33328468 33328468 G T NCOA6 Silent p.L1864L 0.07 TCGA-BH-A0BM-01 21 27425581 27425581 G A APP Missense_Mutation p.H147Y 0.04 tolerated(0.19) benign(0.311) TCGA-BH-A0BM-01 2 160031601 160031601 A G TANC1 Silent p.Q547Q 0.26 TCGA-BH-A0BM-01 2 55844324 55844324 T C SMEK2 Missense_Mutation p.E33G 0.06 deleterious(0.03) benign(0.209) TCGA-BH-A0BM-01 3 111368621 111368621 G A CD96 Missense_Mutation p.D576N 0.03 tolerated(0.11) probably_damaging(0.996) TCGA-BH-A0BM-01 3 128356884 128356884 C T RPN1 Missense_Mutation p.V131M 0.39 deleterious(0) probably_damaging(0.961) TCGA-BH-A0BM-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.39 deleterious(0.01) probably_damaging(1) TCGA-BH-A0BM-01 3 64554073 64554073 G A ADAMTS9 Missense_Mutation p.P1499S 0.31 deleterious(0.01) probably_damaging(0.984) TCGA-BH-A0BM-01 4 142654115 142654117 AAG - IL15 3'UTR 0.28 TCGA-BH-A0BM-01 5 64838652 64838652 G T CENPK Missense_Mutation p.L89I 0.04 deleterious(0) probably_damaging(0.911) TCGA-BH-A0BM-01 8 95384609 95384609 G T RAD54B Nonsense_Mutation p.S841* 0.31 TCGA-BH-A0BM-01 9 135797350 135797350 C T TSC1 Silent p.A173A 0.28 TCGA-BH-A0BO-01 10 15290661 15290661 G A FAM171A1 Missense_Mutation p.A244V 0.20 tolerated(0.12) possibly_damaging(0.472) TCGA-BH-A0BO-01 11 43428954 43428954 G A TTC17 Missense_Mutation p.A631T 0.14 tolerated(0.19) probably_damaging(0.978) TCGA-BH-A0BO-01 12 104461732 104461732 G A HCFC2 Missense_Mutation p.R107H 0.15 deleterious(0) probably_damaging(0.984) TCGA-BH-A0BO-01 12 85460647 85460647 A C LRRIQ1 Missense_Mutation p.E889A 0.20 deleterious(0.01) possibly_damaging(0.808) TCGA-BH-A0BO-01 13 33017222 33017222 A T N4BP2L2 Missense_Mutation p.N484K 0.12 deleterious(0.02) possibly_damaging(0.5) TCGA-BH-A0BO-01 13 45694797 45694797 G A GTF2F2 Missense_Mutation p.E3K 0.13 tolerated(0.31) benign(0.001) TCGA-BH-A0BO-01 16 321084 321084 G A RGS11 Missense_Mutation p.T293M 0.33 deleterious(0.01) probably_damaging(1) TCGA-BH-A0BO-01 19 1507614 1507614 G A ADAMTSL5 Silent p.T210T 0.16 TCGA-BH-A0BO-01 19 50189355 50189355 G A PRMT1 Silent p.V255V 0.13 TCGA-BH-A0BO-01 19 6001886 6001886 G T RFX2 Missense_Mutation p.A600D 0.14 tolerated(0.05) benign(0.001) TCGA-BH-A0BO-01 1 150531099 150531099 T C ADAMTSL4 Missense_Mutation p.W845R 0.08 deleterious(0) probably_damaging(0.95) TCGA-BH-A0BO-01 1 151746820 151746820 C G TDRKH Intron 0.12 TCGA-BH-A0BO-01 20 26063548 26063548 G A FAM182A RNA 0.13 TCGA-BH-A0BO-01 2 33540311 33540311 C G LTBP1 Missense_Mutation p.I1235M 0.16 tolerated(0.2) possibly_damaging(0.694) TCGA-BH-A0BO-01 2 85782715 85782715 T C GGCX Splice_Site p.X207_splice 0.05 TCGA-BH-A0BO-01 3 121825056 121825056 C G CD86 Missense_Mutation p.Q138E 0.18 tolerated(0.34) benign(0.405) TCGA-BH-A0BO-01 3 129370451 129370451 A C TMCC1 Missense_Mutation p.V612G 0.14 deleterious(0.01) probably_damaging(0.936) TCGA-BH-A0BO-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.12 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0BO-01 3 40529529 40529529 T C ZNF619 Missense_Mutation p.C550R 0.13 tolerated_low_confidence(0.56) benign(0) TCGA-BH-A0BO-01 4 101950343 101950343 T C PPP3CA Missense_Mutation p.E450G 0.11 deleterious(0.02) benign(0.434) TCGA-BH-A0BO-01 4 3148607 3148607 C G HTT Nonsense_Mutation p.S1076* 0.18 TCGA-BH-A0BO-01 5 147484520 147484520 A T SPINK5 Missense_Mutation p.Q479L 0.15 tolerated(0.22) benign(0.026) TCGA-BH-A0BO-01 5 38506735 38506735 C - LIFR Splice_Site p.X331_splice 0.14 TCGA-BH-A0BO-01 5 56183240 56183241 - T MAP3K1 Frame_Shift_Ins p.R1385Kfs*35 0.16 TCGA-BH-A0BO-01 5 56183296 56183297 - G MAP3K1 Frame_Shift_Ins p.E1404Rfs*16 0.15 TCGA-BH-A0BO-01 5 64747324 64747324 C T ADAMTS6 Missense_Mutation p.D351N 0.16 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BO-01 6 36713227 36713227 G A CPNE5 Silent p.S422S 0.15 TCGA-BH-A0BO-01 6 5216853 5216853 G A LYRM4 Nonsense_Mutation p.Q69* 0.10 TCGA-BH-A0BO-01 7 33388706 33388706 G A BBS9 Silent p.L452L 0.03 TCGA-BH-A0BO-01 8 16944529 16944529 A G MICU3 Silent p.E278E 0.14 TCGA-BH-A0BO-01 8 401409 401409 A G FBXO25 Missense_Mutation p.I206V 0.15 tolerated(0.14) benign(0.003) TCGA-BH-A0BO-01 8 41563662 41563662 C T ANK1 Missense_Mutation p.R732Q 0.09 deleterious(0.03) probably_damaging(0.953) TCGA-BH-A0BO-01 X 117960412 117960412 T C ZCCHC12 Missense_Mutation p.L402P 0.11 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-BH-A0BO-01 X 9900283 9900283 C T SHROOM2 Missense_Mutation p.P987L 0.07 tolerated(0.35) benign(0) TCGA-BH-A0BP-01 10 105658674 105658674 G T OBFC1 Missense_Mutation p.P181H 0.12 deleterious(0.04) probably_damaging(0.995) TCGA-BH-A0BP-01 10 12595305 12595305 G A CAMK1D Silent p.A58A 0.31 TCGA-BH-A0BP-01 10 129907597 129907597 C G MKI67 Missense_Mutation p.R836T 0.07 tolerated(0.13) benign(0.258) TCGA-BH-A0BP-01 10 21157693 21157693 G T NEBL Missense_Mutation p.A195E 0.21 deleterious(0) probably_damaging(0.912) TCGA-BH-A0BP-01 10 29839670 29839670 G A SVIL Missense_Mutation p.S228L 0.29 tolerated(0.24) benign(0.001) TCGA-BH-A0BP-01 10 64000922 64000922 C G RTKN2 Missense_Mutation p.D117H 0.23 deleterious(0) probably_damaging(0.995) TCGA-BH-A0BP-01 10 73912678 73912678 C T ASCC1 Missense_Mutation p.G260D 0.18 tolerated(0.09) possibly_damaging(0.568) TCGA-BH-A0BP-01 10 75520490 75520490 G C SEC24C Silent p.R290R 0.24 TCGA-BH-A0BP-01 10 75675049 75675049 G A PLAU Silent p.V337V 0.42 TCGA-BH-A0BP-01 10 87362343 87362343 C A GRID1 Missense_Mutation p.G906V 0.16 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-BH-A0BP-01 11 1016361 1016361 G T MUC6 Missense_Mutation p.S2147Y 0.12 benign(0.001) TCGA-BH-A0BP-01 11 47833723 47833723 C T NUP160 Missense_Mutation p.A712T 0.30 tolerated(0.11) benign(0.005) TCGA-BH-A0BP-01 11 5221089 5221089 G A OR51V1 Missense_Mutation p.A281V 0.23 tolerated(1) benign(0.002) TCGA-BH-A0BP-01 11 55872841 55872841 G T OR8H2 Missense_Mutation p.G108V 0.19 tolerated(0.57) benign(0.018) TCGA-BH-A0BP-01 11 5632304 5632304 G A TRIM6 Missense_Mutation p.G428E 0.21 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BP-01 11 69465940 69465940 C T CCND1 Missense_Mutation p.R260C 0.14 deleterious(0.03) probably_damaging(0.969) TCGA-BH-A0BP-01 11 74632307 74632307 G A XRRA1 Missense_Mutation p.T195I 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 11 76925783 76925783 C A MYO7A 3'UTR 0.08 TCGA-BH-A0BP-01 12 118511558 118511558 G A VSIG10 Nonsense_Mutation p.R389* 0.19 TCGA-BH-A0BP-01 12 124191321 124191321 C G TCTN2 Missense_Mutation p.H606Q 0.30 tolerated(0.05) benign(0.028) TCGA-BH-A0BP-01 12 124417966 124417966 G A DNAH10 Missense_Mutation p.R4344Q 0.64 probably_damaging(0.999) TCGA-BH-A0BP-01 12 21526336 21526336 G T IAPP Missense_Mutation p.L17F 0.12 tolerated(0.06) benign(0.018) TCGA-BH-A0BP-01 12 44926499 44926499 C T NELL2 Missense_Mutation p.D607N 0.31 deleterious(0.05) probably_damaging(0.992) TCGA-BH-A0BP-01 12 56086681 56086681 T G ITGA7 Missense_Mutation p.S935R 0.12 tolerated(0.11) possibly_damaging(0.776) TCGA-BH-A0BP-01 12 94648563 94648563 C T PLXNC1 Missense_Mutation p.A961V 0.08 tolerated(0.39) benign(0.007) TCGA-BH-A0BP-01 13 114530000 114530000 C T GAS6 Silent p.G482G 0.15 TCGA-BH-A0BP-01 13 99364112 99364112 T A SLC15A1 Missense_Mutation p.Q299L 0.45 deleterious(0) possibly_damaging(0.777) TCGA-BH-A0BP-01 14 19553823 19553823 G A POTEG Missense_Mutation p.R136H 0.06 tolerated(0.12) benign(0.003) TCGA-BH-A0BP-01 14 20502846 20502895 CTGAAGATTTTGAGATTTGGAAAGTCCCAACAAAATAAATTCCGATACCA - OR4K13 Frame_Shift_Del p.V8Dfs*28 0.20 TCGA-BH-A0BP-01 14 21109676 21109676 T A OR6S1 Missense_Mutation p.T59S 0.12 tolerated(0.3) possibly_damaging(0.472) TCGA-BH-A0BP-01 14 31381308 31381308 T C STRN3 Silent p.A485A 0.26 TCGA-BH-A0BP-01 14 81563053 81563053 T C TSHR Splice_Site p.X205_splice 0.08 TCGA-BH-A0BP-01 14 95921720 95921720 G T SYNE3 Silent p.R377R 0.33 TCGA-BH-A0BP-01 15 41805943 41805943 G A LTK 5'UTR 0.47 TCGA-BH-A0BP-01 15 52497096 52497096 C T MYO5C Missense_Mutation p.D1596N 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 15 65386863 65386863 C G UBAP1L Missense_Mutation p.E321Q 0.13 deleterious(0) probably_damaging(0.934) TCGA-BH-A0BP-01 15 65456441 65456441 C G CLPX Missense_Mutation p.R200T 0.12 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BP-01 15 72144513 72144513 G C MYO9A Silent p.L2145L 0.12 TCGA-BH-A0BP-01 15 73635795 73635795 C T HCN4 Silent p.T380T 0.15 TCGA-BH-A0BP-01 15 78790472 78790472 G A IREB2 Missense_Mutation p.R960Q 0.09 deleterious(0) possibly_damaging(0.787) TCGA-BH-A0BP-01 15 78790549 78790549 G T IREB2 3'UTR 0.11 TCGA-BH-A0BP-01 15 78790563 78790563 G T IREB2 3'UTR 0.10 TCGA-BH-A0BP-01 15 82533624 82533624 C T EFTUD1 Missense_Mutation p.G122E 0.17 deleterious(0) probably_damaging(0.986) TCGA-BH-A0BP-01 15 91424597 91424597 C T FURIN Missense_Mutation p.T625M 0.11 tolerated(0.22) benign(0.009) TCGA-BH-A0BP-01 15 99671835 99671835 G A SYNM Silent p.S1089S 0.07 TCGA-BH-A0BP-01 16 1470348 1470348 C T C16orf91 Missense_Mutation p.E257K 0.05 deleterious_low_confidence(0.02) benign(0.361) TCGA-BH-A0BP-01 16 28883552 28883552 G A SH2B1 Missense_Mutation p.D519N 0.10 deleterious(0) benign(0.044) TCGA-BH-A0BP-01 16 28900152 28900152 C T ATP2A1 Missense_Mutation p.R325W 0.07 deleterious(0) probably_damaging(0.984) TCGA-BH-A0BP-01 16 29824982 29824982 C T PRRT2 Missense_Mutation p.P203S 0.20 tolerated_low_confidence(0.31) benign(0.133) TCGA-BH-A0BP-01 16 3293384 3293384 C T MEFV Silent p.A701A 0.17 TCGA-BH-A0BP-01 16 3299639 3299639 C T MEFV Missense_Mutation p.G351D 0.10 tolerated(0.41) benign(0.002) TCGA-BH-A0BP-01 16 461554 461554 C T DECR2 Silent p.F285F 0.04 TCGA-BH-A0BP-01 16 58287992 58287992 G T CCDC113 Nonsense_Mutation p.E107* 0.24 TCGA-BH-A0BP-01 16 67644837 67644837 A G CTCF Silent p.E34E 0.21 TCGA-BH-A0BP-01 16 70542309 70542309 C T COG4 Missense_Mutation p.R354K 0.23 tolerated(0.81) benign(0.06) TCGA-BH-A0BP-01 16 88952427 88952427 C T CBFA2T3 Missense_Mutation p.D279N 0.28 deleterious(0.03) possibly_damaging(0.862) TCGA-BH-A0BP-01 17 10408797 10408797 C T MYH1 Missense_Mutation p.E736K 0.43 tolerated(0.2) possibly_damaging(0.447) TCGA-BH-A0BP-01 17 33430502 33430502 G A RAD51L3-RFFL Missense_Mutation p.S54F 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.649) TCGA-BH-A0BP-01 17 46627807 46627807 G A HOXB3 Silent p.S395S 0.06 TCGA-BH-A0BP-01 17 48275559 48275559 G C COL1A1 Missense_Mutation p.S184C 0.06 unknown(0) TCGA-BH-A0BP-01 17 48753315 48753315 G C ABCC3 Silent p.L977L 0.06 TCGA-BH-A0BP-01 17 66925207 66925207 T G ABCA8 Missense_Mutation p.M370L 0.21 deleterious(0.02) benign(0.043) TCGA-BH-A0BP-01 17 72699172 72699172 A T CD300LF Splice_Site p.X149_splice 0.60 TCGA-BH-A0BP-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 17 76181148 76181148 C T TK1 Missense_Mutation p.C66Y 0.04 tolerated(0.66) benign(0) TCGA-BH-A0BP-01 17 7798780 7798780 C T CHD3 Nonsense_Mutation p.Q602* 0.35 TCGA-BH-A0BP-01 18 57016441 57016441 C T LMAN1 Missense_Mutation p.D223N 0.17 tolerated(1) benign(0.003) TCGA-BH-A0BP-01 19 12721568 12721568 C T ZNF490 5'UTR 0.06 TCGA-BH-A0BP-01 19 12779204 12779204 T G WDR83OS Missense_Mutation p.Q97P 0.20 deleterious(0.02) probably_damaging(1) TCGA-BH-A0BP-01 19 13335577 13335577 G A CACNA1A Missense_Mutation p.R1879W 0.13 possibly_damaging(0.835) TCGA-BH-A0BP-01 19 16989335 16989335 C T SIN3B Missense_Mutation p.H1096Y 0.07 deleterious(0) probably_damaging(0.979) TCGA-BH-A0BP-01 19 1782208 1782208 G C ATP8B3 3'UTR 0.37 TCGA-BH-A0BP-01 19 1782908 1782908 G C ATP8B3 3'UTR 0.16 TCGA-BH-A0BP-01 19 1782929 1782929 G C ATP8B3 3'UTR 0.26 TCGA-BH-A0BP-01 19 1783122 1783122 G C ATP8B3 Missense_Mutation p.L1270V 0.33 deleterious(0.03) possibly_damaging(0.556) TCGA-BH-A0BP-01 19 3474787 3474787 G A C19orf77 3'UTR 0.15 TCGA-BH-A0BP-01 19 35530584 35530584 G A HPN 5'Flank 0.17 TCGA-BH-A0BP-01 19 37239608 37239608 T A ZNF850 Silent p.I778I 0.11 TCGA-BH-A0BP-01 19 37413671 37413671 G C ZNF568 5'UTR 0.08 TCGA-BH-A0BP-01 19 37733525 37733525 A G ZNF383 Silent p.K129K 0.08 TCGA-BH-A0BP-01 19 37853010 37853010 G A HKR1 Splice_Site p.X105_splice 0.24 TCGA-BH-A0BP-01 19 4290544 4290544 G A SHD Missense_Mutation p.V313I 0.30 tolerated(0.83) benign(0.264) TCGA-BH-A0BP-01 19 438818 438818 G T SHC2 Missense_Mutation p.A207E 0.13 deleterious(0.02) possibly_damaging(0.745) TCGA-BH-A0BP-01 19 5131979 5131979 C A KDM4B Missense_Mutation p.P623T 0.15 possibly_damaging(0.908) TCGA-BH-A0BP-01 19 51986358 51986358 A G CEACAM18 Missense_Mutation p.E315G 0.63 tolerated(0.12) possibly_damaging(0.542) TCGA-BH-A0BP-01 19 52521663 52521663 G A ZNF614 Missense_Mutation p.R34W 0.10 tolerated(0.17) benign(0.003) TCGA-BH-A0BP-01 19 52569672 52569672 T C ZNF841 Missense_Mutation p.N488S 0.10 tolerated(0.05) benign(0.043) TCGA-BH-A0BP-01 19 53208097 53208097 C A ZNF611 3'UTR 0.16 TCGA-BH-A0BP-01 19 56164049 56164049 G C CCDC106 Missense_Mutation p.K260N 0.18 tolerated(0.19) benign(0.091) TCGA-BH-A0BP-01 19 57175732 57175732 G C ZNF835 Missense_Mutation p.R279G 0.12 tolerated(0.08) benign(0.008) TCGA-BH-A0BP-01 19 58439287 58439287 C G ZNF418 Missense_Mutation p.G88R 0.13 tolerated(0.08) probably_damaging(0.996) TCGA-BH-A0BP-01 19 8842179 8842179 C A OR2Z1 Nonsense_Mutation p.C263* 0.08 TCGA-BH-A0BP-01 19 9085910 9085910 G T MUC16 Missense_Mutation p.P1969T 0.11 unknown(0) TCGA-BH-A0BP-01 19 9090329 9090329 T A MUC16 Missense_Mutation p.S496C 0.16 unknown(0) TCGA-BH-A0BP-01 19 9236911 9236911 G A OR7G3 Missense_Mutation p.S239F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A0BP-01 1 152326394 152326394 C T FLG2 Missense_Mutation p.E1290K 0.10 benign(0.307) TCGA-BH-A0BP-01 1 154942817 154942817 G A SHC1 Silent p.F62F 0.11 TCGA-BH-A0BP-01 1 158648298 158648298 A T SPTA1 Silent p.I235I 0.17 TCGA-BH-A0BP-01 1 162366987 162366987 T C SH2D1B 3'UTR 0.12 TCGA-BH-A0BP-01 1 16946395 16946395 G C RP5-1182A14.5 3'Flank 0.08 TCGA-BH-A0BP-01 1 17023186 17023186 C T ESPNP RNA 0.06 TCGA-BH-A0BP-01 1 178435229 178435229 G T RASAL2 Missense_Mutation p.D1188Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BP-01 1 228432172 228432172 C T OBSCN Silent p.C1219C 0.17 TCGA-BH-A0BP-01 1 236914954 236914954 T A ACTN2 Splice_Site p.X613_splice 0.25 TCGA-BH-A0BP-01 1 248039226 248039226 C T TRIM58 Missense_Mutation p.T299M 0.20 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 1 248224122 248224122 C G OR2L3 Missense_Mutation p.L47V 0.10 deleterious(0.01) benign(0.242) TCGA-BH-A0BP-01 1 32713189 32713189 G A FAM167B Missense_Mutation p.R56H 0.16 tolerated(0.25) benign(0) TCGA-BH-A0BP-01 1 41978821 41978821 A C HIVEP3 Missense_Mutation p.L2024R 0.11 benign(0.002) TCGA-BH-A0BP-01 1 69523 69523 G T OR4F5 Missense_Mutation p.G145C 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 20 23065739 23065739 C A CD93 Missense_Mutation p.G364V 0.36 deleterious(0.03) benign(0.355) TCGA-BH-A0BP-01 20 2380303 2380303 A T TGM6 Missense_Mutation p.I257F 0.12 deleterious(0) probably_damaging(0.972) TCGA-BH-A0BP-01 20 35885234 35885234 G A GHRH Missense_Mutation p.S20F 0.05 tolerated_low_confidence(0.06) benign(0.016) TCGA-BH-A0BP-01 20 37529305 37529305 C T PPP1R16B Silent p.I183I 0.35 TCGA-BH-A0BP-01 20 44037247 44037248 - T DBNDD2 Splice_Site p.X149_splice 0.22 TCGA-BH-A0BP-01 22 24583193 24583193 G A SUSD2 Missense_Mutation p.G556R 0.15 tolerated(0.45) benign(0.015) TCGA-BH-A0BP-01 22 32009792 32009792 C T SFI1 Silent p.L983L 0.21 TCGA-BH-A0BP-01 22 39382037 39382037 G A APOBEC3B Missense_Mutation p.R132Q 0.19 tolerated(1) benign(0.009) TCGA-BH-A0BP-01 22 50686657 50686657 G C HDAC10 Missense_Mutation p.Q360E 0.10 tolerated(0.6) benign(0.338) TCGA-BH-A0BP-01 2 102476239 102476239 G A MAP4K4 Silent p.P539P 0.19 TCGA-BH-A0BP-01 2 141253162 141253162 A T LRP1B Missense_Mutation p.D3002E 0.32 benign(0.417) TCGA-BH-A0BP-01 2 163302698 163302698 A T KCNH7 Missense_Mutation p.F462I 0.19 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BP-01 2 164467143 164467143 G A FIGN Missense_Mutation p.T400I 0.23 tolerated(0.32) probably_damaging(0.915) TCGA-BH-A0BP-01 2 175673727 175673727 G A CHN1 Silent p.I336I 0.14 TCGA-BH-A0BP-01 2 179479066 179479066 C A TTN Missense_Mutation p.G16353V 0.19 TCGA-BH-A0BP-01 2 182542944 182542944 G A NEUROD1 Missense_Mutation p.P215L 0.49 deleterious(0.01) benign(0.216) TCGA-BH-A0BP-01 2 220116404 220116404 G C TUBA4A Silent p.L86L 0.09 TCGA-BH-A0BP-01 2 27606873 27606873 G A PPM1G Silent p.D304D 0.18 TCGA-BH-A0BP-01 2 32476391 32476391 C T NLRC4 Missense_Mutation p.R181Q 0.14 tolerated(0.22) benign(0.093) TCGA-BH-A0BP-01 2 37111155 37111155 G A STRN Missense_Mutation p.S369L 0.15 tolerated(0.26) benign(0.009) TCGA-BH-A0BP-01 2 54853074 54853074 C T SPTBN1 Silent p.N449N 0.06 TCGA-BH-A0BP-01 2 55463924 55463924 C T MTIF2 Missense_Mutation p.D682N 0.29 deleterious(0.04) benign(0.126) TCGA-BH-A0BP-01 2 80620360 80620360 C T CTNNA2 Missense_Mutation p.P361S 0.13 tolerated(0.74) benign(0.009) TCGA-BH-A0BP-01 2 95515028 95515028 C T RNU6-1320P 5'Flank 0.16 TCGA-BH-A0BP-01 3 123419378 123419378 C T MYLK Silent p.P979P 0.08 TCGA-BH-A0BP-01 3 129120504 129120504 G T EFCAB12 Missense_Mutation p.P551T 0.24 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BP-01 3 130119918 130119918 T C COL6A5 Silent p.H1345H 0.33 TCGA-BH-A0BP-01 3 148744285 148744285 G C GYG1 Missense_Mutation p.R292T 0.11 tolerated(0.5) benign(0.024) TCGA-BH-A0BP-01 3 150661690 150661690 G A CLRN1 Intron 0.23 TCGA-BH-A0BP-01 3 186459855 186459855 C T KNG1 Missense_Mutation p.T557I 0.21 tolerated(0.07) benign(0.004) TCGA-BH-A0BP-01 3 37476359 37476359 G A C3orf35 Missense_Mutation p.R84K 0.20 tolerated_low_confidence(0.38) benign(0.041) TCGA-BH-A0BP-01 3 42754772 42754772 C G CCDC13 Missense_Mutation p.E585D 0.13 deleterious(0.04) benign(0.057) TCGA-BH-A0BP-01 3 50332871 50332871 G C HYAL3 Missense_Mutation p.L55V 0.08 deleterious(0) benign(0.403) TCGA-BH-A0BP-01 3 50332918 50332918 G T HYAL3 Nonsense_Mutation p.S39* 0.11 TCGA-BH-A0BP-01 3 75788181 75788184 TGAG - ZNF717 Frame_Shift_Del p.T197Sfs*35 0.15 TCGA-BH-A0BP-01 3 89176423 89176423 G T EPHA3 Silent p.G51G 0.21 TCGA-BH-A0BP-01 4 140196454 140196454 C T MGARP Missense_Mutation p.G59S 0.14 deleterious(0.03) possibly_damaging(0.905) TCGA-BH-A0BP-01 4 153692166 153692166 T A TIGD4 5'UTR 0.12 TCGA-BH-A0BP-01 4 155410719 155410719 C A DCHS2 Missense_Mutation p.V597F 0.22 tolerated(0.46) benign(0.064) TCGA-BH-A0BP-01 4 159630703 159630703 C A PPID 3'UTR 0.10 TCGA-BH-A0BP-01 4 166243283 166243283 G C KLHL2 3'UTR 0.13 TCGA-BH-A0BP-01 4 1986593 1986593 G C NELFA Silent p.P337P 0.13 TCGA-BH-A0BP-01 4 66467434 66467434 C T EPHA5 Missense_Mutation p.E279K 0.27 deleterious(0) probably_damaging(0.955) TCGA-BH-A0BP-01 4 81967606 81967606 G A BMP3 Missense_Mutation p.R344Q 0.14 tolerated(1) benign(0) TCGA-BH-A0BP-01 4 84216541 84216542 TA - HPSE Nonsense_Mutation p.Y529* 0.45 TCGA-BH-A0BP-01 5 139943974 139943974 C T APBB3 5'Flank 0.24 TCGA-BH-A0BP-01 5 140725012 140725012 T A PCDHGA3 Missense_Mutation p.I471N 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BH-A0BP-01 5 1463771 1463771 C G LPCAT1 Missense_Mutation p.D534H 0.16 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-BH-A0BP-01 5 38407076 38407076 C A EGFLAM Silent p.P325P 0.14 TCGA-BH-A0BP-01 5 58334711 58334711 G T PDE4D Missense_Mutation p.S299Y 0.26 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BH-A0BP-01 6 161137755 161137755 C A PLG Missense_Mutation p.D249E 0.27 tolerated(0.05) benign(0.068) TCGA-BH-A0BP-01 6 161470713 161470713 G - MAP3K4 Frame_Shift_Del p.V471Yfs*8 0.29 TCGA-BH-A0BP-01 6 17781410 17781410 C A KIF13A Nonsense_Mutation p.E1223* 0.04 TCGA-BH-A0BP-01 6 18161635 18161635 G C KDM1B Missense_Mutation p.K55N 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-BH-A0BP-01 6 26156800 26156800 C T HIST1H1E Missense_Mutation p.A61V 0.31 deleterious(0) probably_damaging(0.954) TCGA-BH-A0BP-01 6 35477415 35477415 C A TULP1 Missense_Mutation p.K238N 0.24 deleterious(0.02) probably_damaging(0.941) TCGA-BH-A0BP-01 6 36177594 36177594 G C BRPF3 Missense_Mutation p.E590Q 0.21 tolerated(1) benign(0.003) TCGA-BH-A0BP-01 6 46108029 46108029 G T ENPP4 Missense_Mutation p.D237Y 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 6 83847715 83847715 C T DOPEY1 Silent p.L1318L 0.32 TCGA-BH-A0BP-01 7 122114548 122114548 C G CADPS2 Missense_Mutation p.G629R 0.24 deleterious(0) possibly_damaging(0.887) TCGA-BH-A0BP-01 7 142206735 142206735 C G TRBV10-2 Missense_Mutation p.L40F 0.38 deleterious(0.01) possibly_damaging(0.712) TCGA-BH-A0BP-01 7 149463318 149463318 C G ZNF467 Missense_Mutation p.W91C 0.13 deleterious(0) probably_damaging(0.962) TCGA-BH-A0BP-01 7 149475874 149475874 G A SSPO RNA 0.24 TCGA-BH-A0BP-01 7 150417441 150417441 C T GIMAP1 Silent p.L117L 0.21 TCGA-BH-A0BP-01 7 15726089 15726089 C G MEOX2 5'UTR 0.11 TCGA-BH-A0BP-01 7 21934323 21934323 G C DNAH11 Missense_Mutation p.R4285T 0.08 possibly_damaging(0.839) TCGA-BH-A0BP-01 7 27148069 27148069 C T HOXA3 Missense_Mutation p.R266H 0.29 tolerated(0.17) benign(0.363) TCGA-BH-A0BP-01 7 27856569 27856569 C G TAX1BP1 Missense_Mutation p.S666C 0.29 deleterious(0.01) possibly_damaging(0.627) TCGA-BH-A0BP-01 7 44189394 44189394 T A GCK Missense_Mutation p.Y216F 0.20 tolerated(0.18) probably_damaging(0.993) TCGA-BH-A0BP-01 7 82764214 82764214 G A PCLO Silent p.T884T 0.16 TCGA-BH-A0BP-01 7 91830712 91830712 C T KRIT1 Missense_Mutation p.G684D 0.09 tolerated(0.26) benign(0.358) TCGA-BH-A0BP-01 7 92143236 92143236 C T PEX1 Missense_Mutation p.V429I 0.25 tolerated(0.11) benign(0.095) TCGA-BH-A0BP-01 8 124359355 124359355 C T ATAD2 Missense_Mutation p.R730K 0.12 tolerated(0.33) benign(0) TCGA-BH-A0BP-01 8 145057946 145057946 C G PARP10 Missense_Mutation p.G604A 0.39 tolerated(0.08) benign(0.231) TCGA-BH-A0BP-01 8 3216706 3216706 C T CSMD1 Missense_Mutation p.R1091H 0.16 benign(0.112) TCGA-BH-A0BP-01 8 35583857 35583857 G A UNC5D Silent p.E497E 0.16 TCGA-BH-A0BP-01 8 77766362 77766362 C T ZFHX4 Missense_Mutation p.T2402I 0.12 benign(0.001) TCGA-BH-A0BP-01 8 90921927 90921927 G A OSGIN2 Silent p.V59V 0.05 TCGA-BH-A0BP-01 9 127570099 127570100 - C OLFML2A Frame_Shift_Ins p.V406Cfs*51 0.32 TCGA-BH-A0BP-01 9 135864487 135864487 C A GFI1B Missense_Mutation p.R184S 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BP-01 9 20862673 20862673 C G FOCAD Missense_Mutation p.L673V 0.26 deleterious(0) probably_damaging(0.988) TCGA-BH-A0BP-01 9 21011668 21011668 A G PTPLAD2 Missense_Mutation p.I137T 0.29 tolerated(0.16) benign(0.004) TCGA-BH-A0BP-01 9 21187338 21187338 C T IFNA4 Missense_Mutation p.E65K 0.13 tolerated(0.88) benign(0.02) TCGA-BH-A0BP-01 9 35399191 35399191 G A UNC13B Silent p.T1287T 0.22 TCGA-BH-A0BP-01 9 35754070 35754070 C A MSMP Silent p.G19G 0.11 TCGA-BH-A0BP-01 9 77613613 77613613 G A C9orf41 Nonsense_Mutation p.R271* 0.26 TCGA-BH-A0BP-01 X 138886719 138886719 G A ATP11C Missense_Mutation p.P159S 0.23 deleterious(0) probably_damaging(1) TCGA-BH-A0BP-01 X 142718314 142718314 C A SLITRK4 Missense_Mutation p.R204L 0.25 tolerated(0.12) probably_damaging(0.997) TCGA-BH-A0BP-01 X 148607283 148607283 C T IDS Intron 0.16 TCGA-BH-A0BP-01 X 24228434 24228434 G A ZFX Silent p.K453K 0.13 TCGA-BH-A0BP-01 X 30268753 30268753 C T MAGEB1 Missense_Mutation p.T48I 0.10 tolerated(0.33) benign(0.133) TCGA-BH-A0BP-01 X 47836619 47836619 G A ZNF182 Silent p.P289P 0.27 TCGA-BH-A0BP-01 X 48546700 48546700 C T WAS Silent p.L263L 0.24 TCGA-BH-A0BQ-01 10 8115723 8115723 A T GATA3 Nonsense_Mutation p.K358* 0.13 TCGA-BH-A0BQ-01 11 117351189 117351189 C T DSCAML1 Silent p.T978T 0.18 TCGA-BH-A0BQ-01 11 125237868 125237868 C T PKNOX2 Nonsense_Mutation p.R72* 0.25 TCGA-BH-A0BQ-01 11 82693066 82693066 C G RAB30 3'UTR 0.21 TCGA-BH-A0BQ-01 11 8728753 8728753 C T ST5 Missense_Mutation p.R817H 0.16 deleterious(0) probably_damaging(0.93) TCGA-BH-A0BQ-01 12 110929662 110929662 G A VPS29 3'UTR 0.22 TCGA-BH-A0BQ-01 12 111064227 111064227 C A TCTN1 Missense_Mutation p.N134K 0.15 deleterious(0.03) benign(0.211) TCGA-BH-A0BQ-01 12 13716941 13716941 G A GRIN2B Silent p.A1077A 0.22 TCGA-BH-A0BQ-01 12 30834753 30834753 T C IPO8 Splice_Site p.X108_splice 0.12 TCGA-BH-A0BQ-01 16 67070658 67070658 G A CBFB Silent p.K94K 0.27 TCGA-BH-A0BQ-01 16 72923665 72923665 A T ZFHX3 Missense_Mutation p.I1138N 0.19 probably_damaging(0.991) TCGA-BH-A0BQ-01 18 29041208 29041208 G T DSG3 Nonsense_Mutation p.E278* 0.15 TCGA-BH-A0BQ-01 18 61067316 61067316 C T VPS4B Missense_Mutation p.R252H 0.17 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BQ-01 19 18474503 18474503 T A PGPEP1 3'UTR 0.17 TCGA-BH-A0BQ-01 19 59010502 59010502 C T SLC27A5 Missense_Mutation p.V585M 0.23 deleterious(0.02) benign(0.415) TCGA-BH-A0BQ-01 19 8201277 8201277 C T FBN3 Missense_Mutation p.C447Y 0.12 deleterious(0) probably_damaging(0.954) TCGA-BH-A0BQ-01 1 107691296 107691296 G T NTNG1 Missense_Mutation p.W27C 0.18 deleterious(0.03) probably_damaging(0.971) TCGA-BH-A0BQ-01 1 12405462 12405462 C A VPS13D Missense_Mutation p.Q2973K 0.19 benign(0.351) TCGA-BH-A0BQ-01 1 207644142 207644142 G C CR2 Missense_Mutation p.R428P 0.10 deleterious(0.01) probably_damaging(0.938) TCGA-BH-A0BQ-01 1 223400952 223400952 C T SUSD4 Missense_Mutation p.A349T 0.12 tolerated(0.7) benign(0.014) TCGA-BH-A0BQ-01 1 52302109 52302109 A C NRD1 Missense_Mutation p.S256A 0.09 tolerated_low_confidence(0.45) benign(0) TCGA-BH-A0BQ-01 1 8390663 8390663 G A SLC45A1 Silent p.T370T 0.12 TCGA-BH-A0BQ-01 2 27667302 27667302 C A IFT172 Missense_Mutation p.Q1749H 0.14 tolerated_low_confidence(0.37) benign(0.013) TCGA-BH-A0BQ-01 2 63714608 63714608 G A WDPCP Nonsense_Mutation p.Q61* 0.20 TCGA-BH-A0BQ-01 2 73900111 73900111 C T ALMS1P RNA 0.13 TCGA-BH-A0BQ-01 3 105253613 105253613 C T ALCAM Silent p.F218F 0.13 TCGA-BH-A0BQ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A0BQ-01 3 44369790 44369790 G A TOPAZ1 Missense_Mutation p.R1575Q 0.10 tolerated(0.05) benign(0.304) TCGA-BH-A0BQ-01 3 52402833 52402833 G A DNAH1 Missense_Mutation p.D1948N 0.22 probably_damaging(1) TCGA-BH-A0BQ-01 7 34125684 34125684 G A BMPER Silent p.V575V 0.25 TCGA-BH-A0BS-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.38 TCGA-BH-A0BS-01 12 111160057 111160057 A G PPP1CC Silent p.Y255Y 0.33 TCGA-BH-A0BS-01 13 20356657 20356657 G T PSPC1 Missense_Mutation p.R81S 0.15 deleterious(0) benign(0.241) TCGA-BH-A0BS-01 13 26793710 26793710 T C RNF6 Missense_Mutation p.E26G 0.39 tolerated(0.15) benign(0.01) TCGA-BH-A0BS-01 13 36900575 36900575 C T SPG20 Intron 0.44 TCGA-BH-A0BS-01 13 38172905 38172905 C G POSTN 5'UTR 0.37 TCGA-BH-A0BS-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.45 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BS-01 14 23079933 23079933 T - ABHD4 3'UTR 0.37 TCGA-BH-A0BS-01 14 95058404 95058404 A T SERPINA5 Missense_Mutation p.K350I 0.31 deleterious(0) probably_damaging(0.97) TCGA-BH-A0BS-01 15 40557142 40557142 C T PAK6 Silent p.P52P 0.43 TCGA-BH-A0BS-01 15 84868453 84868453 G A AC136698.1 3'Flank 0.22 TCGA-BH-A0BS-01 17 40280336 40280336 G A RAB5C Silent p.V161V 0.40 TCGA-BH-A0BS-01 17 44049307 44049307 G A MAPT Silent p.A72A 0.48 TCGA-BH-A0BS-01 17 6589398 6589398 T G SLC13A5 3'UTR 0.33 TCGA-BH-A0BS-01 19 12802058 12802058 C T FBXW9 Missense_Mutation p.V269M 0.45 deleterious(0) probably_damaging(0.994) TCGA-BH-A0BS-01 1 196621079 196621079 G T CFH 5'UTR 0.50 TCGA-BH-A0BS-01 2 113509932 113509932 T G CKAP2L Missense_Mutation p.E505A 0.36 deleterious(0.04) possibly_damaging(0.767) TCGA-BH-A0BS-01 2 165754885 165754885 C T SLC38A11 3'UTR 0.39 TCGA-BH-A0BS-01 3 33896710 33896711 AT - PDCD6IP Frame_Shift_Del p.I699Sfs*10 0.32 TCGA-BH-A0BS-01 3 47455768 47455768 G A SCAP Missense_Mutation p.L1166F 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-BH-A0BS-01 6 10398931 10398931 A G TFAP2A Missense_Mutation p.C345R 0.34 deleterious(0) probably_damaging(0.993) TCGA-BH-A0BS-01 6 107070840 107070840 A G RTN4IP1 Silent p.G93G 0.39 TCGA-BH-A0BS-01 7 77268823 77268823 C A PTPN12 3'UTR 0.36 TCGA-BH-A0BS-01 8 101534743 101534743 G C ANKRD46 Intron 0.32 TCGA-BH-A0BS-01 X 135732438 135732438 G A CD40LG Missense_Mutation p.R57K 0.35 tolerated(0.45) benign(0.108) TCGA-BH-A0BS-01 X 15682471 15682471 C T TMEM27 Missense_Mutation p.G36R 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A0BT-01 10 104590523 104590523 G T CYP17A1 Missense_Mutation p.S488Y 0.27 deleterious(0) benign(0.446) TCGA-BH-A0BT-01 10 105362895 105362895 T C SH3PXD2A Missense_Mutation p.I666V 0.23 tolerated_low_confidence(0.43) benign(0.001) TCGA-BH-A0BT-01 10 123239386 123239386 G A FGFR2 Silent p.G818G 0.50 TCGA-BH-A0BT-01 10 126523295 126523295 C T FAM175B Nonsense_Mutation p.Q335* 0.23 TCGA-BH-A0BT-01 10 46282632 46282632 T C FAM21C Silent p.S987S 0.39 TCGA-BH-A0BT-01 10 95721080 95721080 C T PIPSL RNA 0.18 TCGA-BH-A0BT-01 11 22360147 22360147 C T SLC17A6 Missense_Mutation p.S23L 0.24 deleterious(0.03) benign(0.008) TCGA-BH-A0BT-01 11 289924 289924 T A ATHL1 Missense_Mutation p.F36L 0.33 deleterious(0.01) benign(0.103) TCGA-BH-A0BT-01 11 64022269 64022269 G A PLCB3 Missense_Mutation p.R76Q 0.36 deleterious(0) benign(0.222) TCGA-BH-A0BT-01 11 67057824 67057824 C T ANKRD13D Silent p.P86P 0.24 TCGA-BH-A0BT-01 11 700143 700143 T C TMEM80 Missense_Mutation p.L39P 0.38 deleterious(0) possibly_damaging(0.675) TCGA-BH-A0BT-01 12 78388624 78388624 T C NAV3 Missense_Mutation p.I238T 0.39 tolerated(0.1) possibly_damaging(0.514) TCGA-BH-A0BT-01 14 22192402 22192402 C T TRAV3 Silent p.P59P 0.53 TCGA-BH-A0BT-01 14 62547865 62547865 G A SYT16 Missense_Mutation p.R436H 0.32 deleterious(0) probably_damaging(1) TCGA-BH-A0BT-01 15 64428587 64428587 G A SNX1 Missense_Mutation p.R475Q 0.63 deleterious(0.04) possibly_damaging(0.511) TCGA-BH-A0BT-01 15 89698616 89698616 T A ABHD2 Missense_Mutation p.I130N 0.66 deleterious(0) possibly_damaging(0.823) TCGA-BH-A0BT-01 17 72368642 72368642 A G GPR142 Missense_Mutation p.D431G 0.55 deleterious(0.03) benign(0.017) TCGA-BH-A0BT-01 17 7578458 7578458 G C TP53 Missense_Mutation p.R158G 0.83 deleterious(0) probably_damaging(0.994) TCGA-BH-A0BT-01 18 67992682 67992682 C T SOCS6 Missense_Mutation p.R260C 0.48 tolerated_low_confidence(0.14) benign(0.092) TCGA-BH-A0BT-01 19 10973880 10973880 C G C19orf38 Silent p.S180S 0.36 TCGA-BH-A0BT-01 1 144871785 144871785 G A PDE4DIP Missense_Mutation p.P1726L 0.19 deleterious(0.03) benign(0.278) TCGA-BH-A0BT-01 1 202318211 202318211 C T PPP1R12B Silent p.L78L 0.41 TCGA-BH-A0BT-01 1 214169869 214169869 C G PROX1 5'UTR 0.08 TCGA-BH-A0BT-01 1 220089131 220089131 G A SLC30A10 Missense_Mutation p.A373V 0.37 tolerated(0.31) benign(0.036) TCGA-BH-A0BT-01 1 237656376 237656376 C A RYR2 Missense_Mutation p.N650K 0.49 possibly_damaging(0.854) TCGA-BH-A0BT-01 22 24034976 24034976 C T RGL4 Missense_Mutation p.P165L 0.27 deleterious(0.03) benign(0.002) TCGA-BH-A0BT-01 2 26671656 26671656 C T DRC1 Silent p.L498L 0.13 TCGA-BH-A0BT-01 2 27604468 27604468 A G PPM1G Nonstop_Mutation p.*547Qext*9 0.05 TCGA-BH-A0BT-01 2 74907173 74907173 C T SEMA4F Missense_Mutation p.P717L 0.43 deleterious(0.01) probably_damaging(0.954) TCGA-BH-A0BT-01 3 119378920 119378920 C T POPDC2 Silent p.L117L 0.50 TCGA-BH-A0BT-01 3 140695183 140695183 A G SLC25A36 Missense_Mutation p.E275G 0.41 deleterious(0.02) probably_damaging(0.977) TCGA-BH-A0BT-01 3 140695184 140695184 A T SLC25A36 Missense_Mutation p.E275D 0.41 deleterious(0.03) possibly_damaging(0.701) TCGA-BH-A0BT-01 3 178922328 178922328 C G PIK3CA Missense_Mutation p.P366R 0.39 tolerated(0.65) benign(0.305) TCGA-BH-A0BT-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0BT-01 3 3887494 3887494 G A LRRN1 Missense_Mutation p.R390H 0.04 deleterious(0) possibly_damaging(0.581) TCGA-BH-A0BT-01 3 51423726 51423726 T C MANF Missense_Mutation p.I61T 0.37 tolerated(0.69) benign(0.002) TCGA-BH-A0BT-01 4 1980493 1980493 G A WHSC1 Missense_Mutation p.G1319R 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A0BT-01 5 140515898 140515898 C T PCDHB5 Silent p.D294D 0.77 TCGA-BH-A0BT-01 5 150948446 150948446 G A FAT2 Missense_Mutation p.A16V 0.68 benign(0.001) TCGA-BH-A0BT-01 6 109820402 109820402 C G AK9 Missense_Mutation p.E1631Q 0.77 deleterious(0) possibly_damaging(0.701) TCGA-BH-A0BT-01 6 11193886 11193886 C T NEDD9 Missense_Mutation p.E167K 0.28 deleterious(0.03) possibly_damaging(0.484) TCGA-BH-A0BT-01 6 6007130 6007130 G A NRN1 5'UTR 0.20 TCGA-BH-A0BT-01 7 100344246 100344249 CTGT - ZAN Frame_Shift_Del p.C285* 0.29 TCGA-BH-A0BT-01 7 131870086 131870086 G A PLXNA4 Missense_Mutation p.R1044W 0.39 deleterious(0) probably_damaging(0.98) TCGA-BH-A0BT-01 8 144877475 144877475 T G SCRIB Missense_Mutation p.H1248P 0.62 benign(0.001) TCGA-BH-A0BT-01 9 35713007 35713007 C T TLN1 Missense_Mutation p.R1129Q 0.27 tolerated(0.14) benign(0.091) TCGA-BH-A0BT-01 X 100103700 100103700 A C NOX1 Missense_Mutation p.V496G 0.41 deleterious(0) probably_damaging(0.94) TCGA-BH-A0BT-01 X 18824537 18824537 C T PPEF1 Missense_Mutation p.S423F 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0BT-01 X 50350796 50350796 G A SHROOM4 Missense_Mutation p.R1116C 0.16 deleterious(0) possibly_damaging(0.704) TCGA-BH-A0BV-01 10 82369254 82369254 C T SH2D4B Missense_Mutation p.P311L 0.35 deleterious(0) possibly_damaging(0.628) TCGA-BH-A0BV-01 11 49175784 49175784 T C FOLH1 Silent p.S628S 0.59 TCGA-BH-A0BV-01 12 48119202 48119202 C T ENDOU 5'UTR 0.39 TCGA-BH-A0BV-01 12 51736468 51736468 C T CELA1 Missense_Mutation p.V73M 0.19 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BV-01 14 20248544 20248544 G A OR4M1 Silent p.R21R 0.19 TCGA-BH-A0BV-01 14 90870228 90870228 C T CALM1 Silent p.P67P 0.32 TCGA-BH-A0BV-01 17 46148831 46148831 G T CBX1 Nonsense_Mutation p.S175* 0.05 TCGA-BH-A0BV-01 17 5462379 5462379 G A NLRP1 Missense_Mutation p.T546I 0.31 deleterious(0) possibly_damaging(0.897) TCGA-BH-A0BV-01 17 72469816 72469816 T C CD300A Missense_Mutation p.I61T 0.36 tolerated(0.16) possibly_damaging(0.845) TCGA-BH-A0BV-01 19 42738787 42738787 G A AC006486.9 Missense_Mutation p.S150F 0.40 deleterious(0.01) benign(0.089) TCGA-BH-A0BV-01 1 212148582 212148582 C T INTS7 Missense_Mutation p.E581K 0.21 tolerated(0.73) benign(0.06) TCGA-BH-A0BV-01 20 4705194 4705194 C T PRND 5'UTR 0.20 TCGA-BH-A0BV-01 2 169869945 169869945 G A ABCB11 Nonsense_Mutation p.Q76* 0.38 TCGA-BH-A0BV-01 2 37480137 37480140 CTTA - PRKD3 3'UTR 0.33 TCGA-BH-A0BV-01 3 10354287 10354287 C T SEC13 Missense_Mutation p.E98K 0.33 tolerated(0.14) benign(0.013) TCGA-BH-A0BV-01 3 183665211 183665211 G C ABCC5 Missense_Mutation p.I1105M 0.20 tolerated(0.19) benign(0.093) TCGA-BH-A0BV-01 3 23934723 23934723 C G NKIRAS1 Missense_Mutation p.E148Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A0BV-01 4 186188284 186188284 G A SNX25 Missense_Mutation p.D192N 0.20 deleterious(0.01) possibly_damaging(0.469) TCGA-BH-A0BV-01 5 140078262 140078262 C T HARS2 3'UTR 0.16 TCGA-BH-A0BV-01 5 175798850 175798850 G A ARL10 Silent p.E229E 0.29 TCGA-BH-A0BV-01 6 26123793 26123793 C T HIST1H2BC Missense_Mutation p.E114K 0.16 tolerated_low_confidence(0.07) benign(0.041) TCGA-BH-A0BV-01 6 88776068 88776068 A C SPACA1 3'UTR 0.50 TCGA-BH-A0BV-01 7 31104525 31104525 C T ADCYAP1R1 Silent p.L44L 0.50 TCGA-BH-A0BV-01 8 77766283 77766283 G A ZFHX4 Missense_Mutation p.A2376T 0.33 benign(0) TCGA-BH-A0BV-01 X 65418840 65418840 G A HEPH Missense_Mutation p.E666K 0.14 tolerated(0.15) benign(0.003) TCGA-BH-A0BW-01 10 127585215 127585215 G A FANK1 Missense_Mutation p.E2K 0.31 deleterious_low_confidence(0.04) benign(0.009) TCGA-BH-A0BW-01 11 101374902 101374902 C T TRPC6 Silent p.S266S 0.24 TCGA-BH-A0BW-01 11 116649495 116649495 A G ZNF259 3'UTR 0.28 TCGA-BH-A0BW-01 11 59807850 59807850 C T OOSP2 5'UTR 0.24 TCGA-BH-A0BW-01 11 63276064 63276064 G A LGALS12 Missense_Mutation p.A59T 0.23 tolerated(0.06) benign(0.031) TCGA-BH-A0BW-01 11 67022616 67022616 G T KDM2A 3'UTR 0.14 TCGA-BH-A0BW-01 12 124103295 124103295 G C DDX55 Missense_Mutation p.R415T 0.30 deleterious(0) probably_damaging(1) TCGA-BH-A0BW-01 12 129558688 129558689 - T TMEM132D Frame_Shift_Ins p.S1011Kfs*16 0.37 TCGA-BH-A0BW-01 12 32530780 32530780 T - BICD1 3'UTR 0.33 TCGA-BH-A0BW-01 12 53189797 53189797 A G KRT3 Silent p.G10G 0.06 TCGA-BH-A0BW-01 12 6753326 6753326 G T ACRBP Nonsense_Mutation p.Y307* 0.44 TCGA-BH-A0BW-01 12 6788134 6788134 C T ZNF384 Silent p.P94P 0.64 TCGA-BH-A0BW-01 13 113512489 113512489 C A ATP11A Missense_Mutation p.A851D 0.48 deleterious(0) possibly_damaging(0.824) TCGA-BH-A0BW-01 13 48881488 48881489 - AG RB1 Frame_Shift_Ins p.A74Efs*4 0.37 TCGA-BH-A0BW-01 13 51530522 51530522 A G RNASEH2B Missense_Mutation p.K284R 0.04 tolerated(0.07) probably_damaging(0.951) TCGA-BH-A0BW-01 14 20665914 20665914 C A OR11G2 Nonsense_Mutation p.Y140* 0.05 TCGA-BH-A0BW-01 14 35245193 35245193 A T BAZ1A Nonsense_Mutation p.L922* 0.37 TCGA-BH-A0BW-01 15 31357292 31357292 A G TRPM1 Intron 0.31 TCGA-BH-A0BW-01 15 52497901 52497901 T G MYO5C Intron 0.06 TCGA-BH-A0BW-01 16 1394620 1394620 C T BAIAP3 Missense_Mutation p.P595S 0.29 tolerated(0.68) benign(0.044) TCGA-BH-A0BW-01 16 2287303 2287303 G A DNASE1L2 Splice_Site p.X106_splice 0.15 TCGA-BH-A0BW-01 16 3274435 3274435 C T ZNF200 Missense_Mutation p.M215I 0.04 tolerated(0.25) benign(0.001) TCGA-BH-A0BW-01 16 70513659 70513659 C T FUK 3'UTR 0.38 TCGA-BH-A0BW-01 17 11701070 11701070 G C DNAH9 Missense_Mutation p.V2794L 0.33 benign(0.403) TCGA-BH-A0BW-01 17 26723044 26723044 A - SARM1 Frame_Shift_Del p.K648Sfs*62 0.22 TCGA-BH-A0BW-01 17 32956211 32956211 G A TMEM132E Silent p.L352L 0.11 TCGA-BH-A0BW-01 17 36623524 36623524 G T ARHGAP23 Missense_Mutation p.A534S 0.27 tolerated(0.36) benign(0.342) TCGA-BH-A0BW-01 17 62133220 62133221 - GCT ERN1 In_Frame_Ins p.Q495dup 0.46 TCGA-BH-A0BW-01 17 72357932 72357932 A C BTBD17 Silent p.P9P 0.18 TCGA-BH-A0BW-01 17 74289101 74289101 A C QRICH2 Missense_Mutation p.D403E 0.20 tolerated(0.14) benign(0.034) TCGA-BH-A0BW-01 17 7579312 7579312 C G TP53 Silent p.T125T 0.41 TCGA-BH-A0BW-01 17 78899279 78899279 A T RPTOR Missense_Mutation p.K973M 0.25 deleterious(0.01) probably_damaging(0.972) TCGA-BH-A0BW-01 17 79872286 79872286 C A SIRT7 Missense_Mutation p.D234Y 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A0BW-01 18 7049147 7049147 G A LAMA1 Missense_Mutation p.T233M 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A0BW-01 19 1041509 1041509 G A ABCA7 Missense_Mutation p.V23I 0.39 tolerated(1) benign(0.001) TCGA-BH-A0BW-01 19 32928151 32928151 G A DPY19L3 Missense_Mutation p.A168T 0.21 tolerated(0.17) benign(0.158) TCGA-BH-A0BW-01 19 35862464 35862464 T C GPR42 Missense_Mutation p.L68P 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A0BW-01 19 37643174 37643174 T - ZNF585A Frame_Shift_Del p.I488Ffs*135 0.23 TCGA-BH-A0BW-01 19 39299504 39299504 C A LGALS4 Missense_Mutation p.K73N 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0BW-01 19 40541342 40541342 C T ZNF780B Missense_Mutation p.C475Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-BH-A0BW-01 19 57335971 57335971 G T PEG3 Missense_Mutation p.P18Q 0.28 deleterious(0.01) probably_damaging(0.946) TCGA-BH-A0BW-01 1 113253093 113253093 A G PPM1J Silent p.N453N 0.26 TCGA-BH-A0BW-01 1 147092549 147092550 TG - BCL9 Frame_Shift_Del p.L863Qfs*43 0.13 TCGA-BH-A0BW-01 1 153923850 153923850 C T CRTC2 Silent p.V430V 0.17 TCGA-BH-A0BW-01 1 163044366 163044366 A T RGS4 3'UTR 0.21 TCGA-BH-A0BW-01 1 170521402 170521402 A T GORAB Silent p.P328P 0.22 TCGA-BH-A0BW-01 1 203030799 203030799 G T PPFIA4 Missense_Mutation p.W450L 0.43 tolerated(0.05) benign(0.049) TCGA-BH-A0BW-01 1 222920385 222920385 G A FAM177B Missense_Mutation p.R68Q 0.53 tolerated(0.28) benign(0.018) TCGA-BH-A0BW-01 1 248263169 248263169 T C OR2L13 Silent p.H164H 0.16 TCGA-BH-A0BW-01 1 27755443 27755443 C A WASF2 Intron 0.34 TCGA-BH-A0BW-01 1 33797024 33797024 T G PHC2 Missense_Mutation p.E643A 0.34 deleterious(0) probably_damaging(0.983) TCGA-BH-A0BW-01 1 33797025 33797025 C T PHC2 Missense_Mutation p.E643K 0.35 deleterious(0.01) probably_damaging(0.947) TCGA-BH-A0BW-01 1 34276437 34276437 G T CSMD2 Silent p.G411G 0.36 TCGA-BH-A0BW-01 1 36432633 36432637 GAAGT - AGO3 Frame_Shift_Del p.R90Tfs*47 0.17 TCGA-BH-A0BW-01 1 92712096 92712096 C G GLMN Silent p.G592G 0.04 TCGA-BH-A0BW-01 1 93297636 93297636 C T RPL5 5'UTR 0.24 TCGA-BH-A0BW-01 20 18507096 18507096 G C SEC23B Missense_Mutation p.G305A 0.25 tolerated(0.07) benign(0.34) TCGA-BH-A0BW-01 22 18354628 18354628 C T MICAL3 Silent p.S801S 0.26 TCGA-BH-A0BW-01 22 40066845 40066845 C G CACNA1I Missense_Mutation p.H1475Q 0.23 deleterious(0.05) benign(0.01) TCGA-BH-A0BW-01 2 132021996 132021996 C T POTEE Missense_Mutation p.R990C 0.19 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BH-A0BW-01 2 136594390 136594390 A C LCT Missense_Mutation p.L117R 0.05 deleterious(0) probably_damaging(0.982) TCGA-BH-A0BW-01 2 1426879 1426879 G A TPO Missense_Mutation p.A53T 0.18 deleterious(0.03) benign(0.187) TCGA-BH-A0BW-01 2 152324648 152324648 T G RIF1 Silent p.T2245T 0.25 TCGA-BH-A0BW-01 2 1667407 1667407 C A PXDN Missense_Mutation p.V513F 0.27 deleterious(0.03) benign(0.082) TCGA-BH-A0BW-01 2 17899487 17899487 T G SMC6 Silent p.R317R 0.04 TCGA-BH-A0BW-01 2 179498292 179498292 T A TTN Missense_Mutation p.D14265V 0.28 TCGA-BH-A0BW-01 2 18765450 18765450 T A NT5C1B Missense_Mutation p.K325N 0.15 deleterious(0.01) possibly_damaging(0.638) TCGA-BH-A0BW-01 2 190611205 190611206 - A ANKAR Frame_Shift_Ins p.T1389Dfs*6 0.26 TCGA-BH-A0BW-01 2 190718672 190718672 G A PMS1 Missense_Mutation p.R277Q 0.29 deleterious(0.04) probably_damaging(0.924) TCGA-BH-A0BW-01 2 70188292 70188300 CCCCAGGGA - ASPRV1 In_Frame_Del p.V174_G176del 0.21 TCGA-BH-A0BW-01 3 113679842 113679842 C A ZDHHC23 3'UTR 0.38 TCGA-BH-A0BW-01 3 121207554 121207554 A G POLQ Silent p.D1408D 0.30 TCGA-BH-A0BW-01 3 12209971 12209971 T C SYN2 RNA 0.05 TCGA-BH-A0BW-01 3 57401248 57401248 A G DNAH12 Missense_Mutation p.Y1901H 0.40 deleterious(0) possibly_damaging(0.727) TCGA-BH-A0BW-01 4 101439079 101439079 G A EMCN 5'UTR 0.22 TCGA-BH-A0BW-01 4 107230071 107230071 G A TBCK Missense_Mutation p.A16V 0.37 deleterious(0) probably_damaging(0.927) TCGA-BH-A0BW-01 4 147741361 147741361 T A TTC29 Missense_Mutation p.K339N 0.25 tolerated(0.07) possibly_damaging(0.84) TCGA-BH-A0BW-01 4 183696086 183696086 G A TENM3 Missense_Mutation p.S1695N 0.23 deleterious(0.02) benign(0) TCGA-BH-A0BW-01 4 53610742 53610742 G A ERVMER34-1 Nonsense_Mutation p.R316* 0.29 TCGA-BH-A0BW-01 4 79236807 79236807 G T FRAS1 Nonsense_Mutation p.E580* 0.20 TCGA-BH-A0BW-01 4 85748077 85748077 C G WDFY3 Silent p.L338L 0.16 TCGA-BH-A0BW-01 5 148730786 148730786 G A GRPEL2 Missense_Mutation p.G207S 0.36 deleterious(0.04) probably_damaging(1) TCGA-BH-A0BW-01 5 236634 236634 G A SDHA Missense_Mutation p.R451H 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BH-A0BW-01 5 80064756 80064756 T A MSH3 Missense_Mutation p.H729Q 0.45 deleterious(0) probably_damaging(0.97) TCGA-BH-A0BW-01 6 135263624 135263639 AGGCTGGAGGAAGCGA - ALDH8A1 Frame_Shift_Del p.F117Cfs*29 0.26 TCGA-BH-A0BW-01 6 33133561 33133561 G A COL11A2 Silent p.P1419P 0.10 TCGA-BH-A0BW-01 6 348901 348901 T A DUSP22 Intron 0.20 TCGA-BH-A0BW-01 6 41029073 41029073 G T APOBEC2 Silent p.R46R 0.41 TCGA-BH-A0BW-01 6 43016268 43016268 T A CUL7 Missense_Mutation p.Q706L 0.30 deleterious(0.04) benign(0.001) TCGA-BH-A0BW-01 6 43487161 43487161 C T POLR1C Nonsense_Mutation p.R78* 0.26 TCGA-BH-A0BW-01 6 51484286 51484286 T A PKHD1 Missense_Mutation p.N3940Y 0.40 deleterious_low_confidence(0) benign(0.316) TCGA-BH-A0BW-01 7 100212817 100212817 C G MOSPD3 3'UTR 0.28 TCGA-BH-A0BW-01 7 100876136 100876136 C G CLDN15 Missense_Mutation p.D148H 0.16 deleterious(0) probably_damaging(0.987) TCGA-BH-A0BW-01 7 134800290 134800290 A G AGBL3 Missense_Mutation p.S757G 0.42 deleterious_low_confidence(0.01) benign(0.121) TCGA-BH-A0BW-01 7 151871273 151871273 C T KMT2C Missense_Mutation p.G3106D 0.28 probably_damaging(1) TCGA-BH-A0BW-01 7 5355696 5355696 C A TNRC18 Silent p.L2251L 0.40 TCGA-BH-A0BW-01 8 110519976 110519976 G - PKHD1L1 Frame_Shift_Del p.N3695Mfs*5 0.24 TCGA-BH-A0BW-01 8 116430602 116430602 C G TRPS1 Missense_Mutation p.G927R 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0BW-01 8 120569768 120569768 T C ENPP2 Missense_Mutation p.E914G 0.51 deleterious(0.02) probably_damaging(0.982) TCGA-BH-A0BW-01 8 19813393 19813393 C T LPL Missense_Mutation p.H273Y 0.04 deleterious(0.03) probably_damaging(0.994) TCGA-BH-A0BW-01 8 6590094 6590097 TATG - AGPAT5 Frame_Shift_Del p.Y140* 0.47 TCGA-BH-A0BW-01 8 73958544 73958544 C T TERF1 3'UTR 0.32 TCGA-BH-A0BW-01 8 99467906 99467906 C G STK3 3'UTR 0.22 TCGA-BH-A0BW-01 9 125239431 125239431 A G OR1J1 Missense_Mutation p.Y259H 0.23 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-BH-A0BW-01 9 131048299 131048299 G A SWI5 Silent p.L210L 0.25 TCGA-BH-A0BW-01 9 131378115 131378115 A G SPTAN1 Missense_Mutation p.I1785V 0.28 deleterious(0) possibly_damaging(0.568) TCGA-BH-A0BW-01 9 141012420 141012420 A G CACNA1B Missense_Mutation p.K1934E 0.23 tolerated(0.09) possibly_damaging(0.695) TCGA-BH-A0BW-01 9 84608347 84608347 C T SPATA31D1 Missense_Mutation p.P988S 0.27 tolerated(0.06) probably_damaging(0.932) TCGA-BH-A0BW-01 X 107018552 107018552 C G TSC22D3 Missense_Mutation p.S33T 0.24 tolerated_low_confidence(0.27) benign(0.001) TCGA-BH-A0BW-01 X 110496378 110496378 G A CAPN6 Missense_Mutation p.H122Y 0.20 deleterious(0) benign(0) TCGA-BH-A0BW-01 X 117782984 117782984 C T DOCK11 Missense_Mutation p.S1492L 0.29 deleterious(0) probably_damaging(0.996) TCGA-BH-A0BW-01 X 153032801 153032801 G A PLXNB3 Silent p.T196T 0.25 TCGA-BH-A0BW-01 X 17750565 17750565 C T NHS Missense_Mutation p.S1625F 0.35 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BW-01 X 20195139 20195139 G C RPS6KA3 Missense_Mutation p.F303L 0.13 tolerated(0.51) possibly_damaging(0.883) TCGA-BH-A0BW-01 X 38145532 38145534 TCC - RPGR In_Frame_Del p.E907del 0.36 TCGA-BH-A0BW-01 X 70356831 70356835 AGGCA - MED12 Frame_Shift_Del p.Q1836Lfs*57 0.36 TCGA-BH-A0BW-01 X 70386913 70386913 T G NLGN3 Silent p.A322A 0.19 TCGA-BH-A0BW-01 X 71549656 71549656 T G HDAC8 3'UTR 0.18 TCGA-BH-A0BZ-01 10 111646073 111646073 C T XPNPEP1 Missense_Mutation p.D227N 0.15 tolerated(0.48) benign(0.002) TCGA-BH-A0BZ-01 10 17432557 17432563 ATGCCAT - ST8SIA6 Frame_Shift_Del p.Y86Lfs*65 0.18 TCGA-BH-A0BZ-01 10 17686289 17686289 C G STAM 5'UTR 0.22 TCGA-BH-A0BZ-01 10 27434428 27434428 T G YME1L1 Missense_Mutation p.K144T 0.25 tolerated(0.61) benign(0.001) TCGA-BH-A0BZ-01 10 31137957 31137957 C A ZNF438 Missense_Mutation p.Q459H 0.27 tolerated(0.18) benign(0.03) TCGA-BH-A0BZ-01 10 35500663 35500663 C G CREM Missense_Mutation p.Q279E 0.20 deleterious(0) probably_damaging(0.995) TCGA-BH-A0BZ-01 10 50681546 50681546 G A ERCC6 Missense_Mutation p.P896S 0.14 deleterious(0.04) benign(0.345) TCGA-BH-A0BZ-01 10 54528028 54528028 T G MBL2 Missense_Mutation p.T206P 0.19 deleterious(0.01) possibly_damaging(0.688) TCGA-BH-A0BZ-01 10 74923668 74923668 T G ECD Missense_Mutation p.M10L 0.15 tolerated(0.17) benign(0.001) TCGA-BH-A0BZ-01 10 75561184 75561184 G A ZSWIM8 Silent p.Q1812Q 0.21 TCGA-BH-A0BZ-01 10 85982013 85982013 G T LRIT2 Missense_Mutation p.P439H 0.14 deleterious(0.05) benign(0.03) TCGA-BH-A0BZ-01 10 90986702 90986702 G A LIPA Missense_Mutation p.T163I 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-BH-A0BZ-01 10 91498778 91498779 - A KIF20B Frame_Shift_Ins p.E1242Gfs*6 0.19 TCGA-BH-A0BZ-01 10 96748684 96748684 C G CYP2C9 Missense_Mutation p.L458V 0.18 deleterious(0) possibly_damaging(0.805) TCGA-BH-A0BZ-01 10 97380966 97380987 GTGGAGAGGCTTAAACGTTTCA - ALDH18A1 Frame_Shift_Del p.L423Hfs*4 0.12 TCGA-BH-A0BZ-01 11 110034079 110034079 A C ZC3H12C Missense_Mutation p.E410D 0.26 deleterious(0.03) possibly_damaging(0.907) TCGA-BH-A0BZ-01 11 117054809 117054809 G C SIDT2 Silent p.G274G 0.53 TCGA-BH-A0BZ-01 11 123476187 123476187 G A GRAMD1B Splice_Site p.X298_splice 0.23 TCGA-BH-A0BZ-01 11 18566206 18566206 C G UEVLD Missense_Mutation p.E342Q 0.03 tolerated(0.36) benign(0.006) TCGA-BH-A0BZ-01 11 27695705 27695705 C G BDNF Missense_Mutation p.V43L 0.18 deleterious_low_confidence(0.04) benign(0.005) TCGA-BH-A0BZ-01 11 55579684 55579684 A T OR5L1 Missense_Mutation p.I248F 0.11 deleterious(0) possibly_damaging(0.903) TCGA-BH-A0BZ-01 11 55798071 55798071 G C OR5AS1 Missense_Mutation p.M59I 0.15 deleterious(0) probably_damaging(0.985) TCGA-BH-A0BZ-01 11 56510423 56510423 C G OR9G4 Missense_Mutation p.A289P 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-BH-A0BZ-01 11 5842494 5842494 T G OR52N2 Nonsense_Mutation p.L310* 0.16 TCGA-BH-A0BZ-01 11 60890420 60890423 GCAA - CD5 Frame_Shift_Del p.I383Sfs*22 0.38 TCGA-BH-A0BZ-01 11 63960739 63960739 C G STIP1 Missense_Mutation p.L67V 0.16 deleterious(0) possibly_damaging(0.54) TCGA-BH-A0BZ-01 11 6638925 6638925 C A TPP1 Missense_Mutation p.L104F 0.39 deleterious(0.05) benign(0.058) TCGA-BH-A0BZ-01 11 67270037 67270037 C T PITPNM1 Silent p.L77L 0.16 TCGA-BH-A0BZ-01 11 74995294 74995294 G A ARRB1 Missense_Mutation p.L48F 0.14 tolerated(0.08) possibly_damaging(0.85) TCGA-BH-A0BZ-01 11 75115215 75115226 GTTGACACTGCT - RPS3 In_Frame_Del p.D185_V188del 0.13 TCGA-BH-A0BZ-01 11 76918405 76918405 G C MYO7A Missense_Mutation p.K1938N 0.15 tolerated(0.31) possibly_damaging(0.474) TCGA-BH-A0BZ-01 11 77885303 77885303 C A KCTD21 Nonsense_Mutation p.E100* 0.14 TCGA-BH-A0BZ-01 11 96086697 96086697 T A CCDC82 3'UTR 0.17 TCGA-BH-A0BZ-01 12 100594648 100594686 GATAATGGAGCTTACAACGCCAAAATCGGTTACAGCCAT - ACTR6 In_Frame_Del p.D7_H19del 0.16 TCGA-BH-A0BZ-01 12 101699822 101699822 C T UTP20 Silent p.N637N 0.13 TCGA-BH-A0BZ-01 12 103234267 103234267 G T PAH Missense_Mutation p.P409H 0.18 deleterious(0) probably_damaging(0.986) TCGA-BH-A0BZ-01 12 105456710 105456710 C A ALDH1L2 Missense_Mutation p.V293F 0.12 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-BH-A0BZ-01 12 108133303 108133303 C G PRDM4 Missense_Mutation p.L650F 0.15 tolerated(0.32) possibly_damaging(0.906) TCGA-BH-A0BZ-01 12 110352416 110352416 A C TCHP Missense_Mutation p.Q435P 0.14 deleterious(0.01) benign(0.347) TCGA-BH-A0BZ-01 12 49424516 49424516 G T KMT2D Silent p.I4569I 0.11 TCGA-BH-A0BZ-01 12 52800015 52800016 CT - KRT82 Frame_Shift_Del p.S16Ffs*28 0.48 TCGA-BH-A0BZ-01 12 52865870 52865870 C A KRT6C Silent p.L245L 0.07 TCGA-BH-A0BZ-01 12 54427159 54427159 G A HOXC5 Missense_Mutation p.A85T 0.09 tolerated(0.6) benign(0.001) TCGA-BH-A0BZ-01 12 56515095 56515095 G T ZC3H10 Missense_Mutation p.R250L 0.21 deleterious(0.01) possibly_damaging(0.906) TCGA-BH-A0BZ-01 12 57036286 57036286 C G ATP5B Missense_Mutation p.E344Q 0.12 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BH-A0BZ-01 12 6080764 6080764 C A VWF Splice_Site p.X2516_splice 0.15 TCGA-BH-A0BZ-01 12 64456793 64456793 G T SRGAP1 Missense_Mutation p.D300Y 0.14 deleterious(0) possibly_damaging(0.781) TCGA-BH-A0BZ-01 12 6730247 6730247 C T LPAR5 Silent p.V56V 0.14 TCGA-BH-A0BZ-01 12 80214584 80214584 C A PPP1R12A Nonsense_Mutation p.E362* 0.06 TCGA-BH-A0BZ-01 13 23808841 23808841 A C SGCG Missense_Mutation p.H96P 0.11 tolerated(0.06) possibly_damaging(0.892) TCGA-BH-A0BZ-01 13 46627925 46627925 G C CPB2 Missense_Mutation p.P366A 0.20 tolerated(0.76) probably_damaging(0.959) TCGA-BH-A0BZ-01 13 52722587 52722587 C A NEK3 Missense_Mutation p.G189V 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 13 58240645 58240645 A C PCDH17 Missense_Mutation p.Q870P 0.43 tolerated(0.27) possibly_damaging(0.53) TCGA-BH-A0BZ-01 13 58298937 58298937 A C PCDH17 Missense_Mutation p.T997P 0.19 deleterious(0) probably_damaging(0.987) TCGA-BH-A0BZ-01 14 106994221 106994221 C A IGHV3-48 Splice_Site p.X16_splice 0.20 TCGA-BH-A0BZ-01 14 20837883 20837883 T A TEP1 Missense_Mutation p.E2458V 0.17 deleterious(0.01) benign(0.393) TCGA-BH-A0BZ-01 14 21109448 21109448 G T OR6S1 Missense_Mutation p.P135T 0.28 tolerated(0.99) probably_damaging(0.998) TCGA-BH-A0BZ-01 14 22977630 22977641 AATTATAAAGCC - TRAJ33 In_Frame_Del p.I16_P19del 0.14 TCGA-BH-A0BZ-01 14 24658635 24658635 G C TM9SF1 Missense_Mutation p.L603V 0.17 tolerated(0.41) benign(0.011) TCGA-BH-A0BZ-01 14 24886547 24886547 G C NYNRIN Missense_Mutation p.W1864C 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A0BZ-01 14 55231251 55231251 T C SAMD4A Missense_Mutation p.I530T 0.42 tolerated(0.63) benign(0.003) TCGA-BH-A0BZ-01 14 62014470 62014470 A G RP11-47I22.4 Missense_Mutation p.K96E 0.14 deleterious(0) probably_damaging(0.984) TCGA-BH-A0BZ-01 14 79175993 79175993 G T NRXN3 Missense_Mutation p.R179I 0.47 deleterious(0) possibly_damaging(0.894) TCGA-BH-A0BZ-01 14 89091378 89091378 G A EML5 Missense_Mutation p.P1612S 0.38 deleterious(0.01) probably_damaging(0.955) TCGA-BH-A0BZ-01 15 29397678 29397678 A G APBA2 Missense_Mutation p.K541E 0.30 tolerated(0.12) benign(0.206) TCGA-BH-A0BZ-01 15 42961416 42961429 CATTACAGTGTGGA - STARD9 Frame_Shift_Del p.Y461Qfs*22 0.21 TCGA-BH-A0BZ-01 15 43873233 43873233 A T PPIP5K1 Missense_Mutation p.M343K 0.22 tolerated(0.23) benign(0.014) TCGA-BH-A0BZ-01 15 45951281 45951281 G A SQRDL Missense_Mutation p.G54S 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-BH-A0BZ-01 15 52517715 52517715 G A MYO5C Silent p.F1074F 0.17 TCGA-BH-A0BZ-01 15 70346800 70346800 G C TLE3 Missense_Mutation p.D604E 0.19 deleterious(0) probably_damaging(0.99) TCGA-BH-A0BZ-01 15 91293258 91293263 GAAAGT - BLM In_Frame_Del p.E254_S255del 0.40 TCGA-BH-A0BZ-01 16 22260122 22260122 A C EEF2K Missense_Mutation p.K132Q 0.15 deleterious(0) possibly_damaging(0.897) TCGA-BH-A0BZ-01 16 2815562 2815562 C G SRRM2 Missense_Mutation p.P1678R 0.14 unknown(0) TCGA-BH-A0BZ-01 16 30079970 30079970 G C ALDOA Missense_Mutation p.D164H 0.13 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BZ-01 16 310060 310084 GTGGAGTGTGCTGTGCCCCAGCCAA - ITFG3 Frame_Shift_Del p.V160Efs*43 0.23 TCGA-BH-A0BZ-01 16 3591811 3591811 T - NLRC3 3'UTR 0.16 TCGA-BH-A0BZ-01 16 49669760 49669760 G A ZNF423 Silent p.N1101N 0.33 TCGA-BH-A0BZ-01 16 57153125 57153125 G C CPNE2 Missense_Mutation p.D176H 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 16 61854993 61854993 T G CDH8 Missense_Mutation p.E287A 0.20 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BZ-01 16 67428930 67428930 C G ZDHHC1 Missense_Mutation p.R402P 0.27 tolerated_low_confidence(0.37) benign(0) TCGA-BH-A0BZ-01 16 9862753 9862753 C T GRIN2A Silent p.T850T 0.34 TCGA-BH-A0BZ-01 17 10405125 10405125 T A MYH1 Missense_Mutation p.D1072V 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 17 13980191 13980191 G A COX10 Missense_Mutation p.S106N 0.24 tolerated(0.43) benign(0.002) TCGA-BH-A0BZ-01 17 17786172 17786172 G A TOM1L2 Silent p.V169V 0.20 TCGA-BH-A0BZ-01 17 27067531 27067531 C A NEK8 Missense_Mutation p.P490T 0.16 tolerated(0.53) benign(0.014) TCGA-BH-A0BZ-01 17 27934851 27934851 C T ANKRD13B Missense_Mutation p.A69V 0.36 deleterious(0.03) possibly_damaging(0.487) TCGA-BH-A0BZ-01 17 36487341 36487341 A T GPR179 Missense_Mutation p.L704Q 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 17 3920660 3920672 ACTACCTTCTCCC - ZZEF1 Splice_Site p.X2665_splice 0.61 TCGA-BH-A0BZ-01 17 39471833 39471833 A G KRTAP17-1 Missense_Mutation p.C24R 0.26 unknown(0) TCGA-BH-A0BZ-01 17 3980054 3980054 C G ZZEF1 Splice_Site p.X1038_splice 0.28 TCGA-BH-A0BZ-01 17 39889034 39889034 T C HAP1 Silent p.L162L 0.17 TCGA-BH-A0BZ-01 17 40125576 40125587 GGAGTTAAGCGA - CNP In_Frame_Del p.E301_E304del 0.15 TCGA-BH-A0BZ-01 17 40715169 40715169 G C COASY Missense_Mutation p.A206P 0.12 tolerated(0.16) possibly_damaging(0.472) TCGA-BH-A0BZ-01 17 40854504 40854504 C A EZH1 3'UTR 0.25 TCGA-BH-A0BZ-01 17 48746861 48746861 G T ABCC3 Missense_Mutation p.G738V 0.17 deleterious(0) probably_damaging(0.955) TCGA-BH-A0BZ-01 17 56247852 56247852 C - OR4D2 Frame_Shift_Del p.M281Cfs*5 0.17 TCGA-BH-A0BZ-01 17 56389025 56389025 C G BZRAP1 Missense_Mutation p.L996F 0.12 deleterious(0.01) possibly_damaging(0.883) TCGA-BH-A0BZ-01 17 57738819 57738819 C A CLTC Missense_Mutation p.P395T 0.13 tolerated(0.06) benign(0.057) TCGA-BH-A0BZ-01 17 60768000 60768000 C T MRC2 Intron 0.14 TCGA-BH-A0BZ-01 17 71232219 71232219 A G C17orf80 Missense_Mutation p.T200A 0.23 tolerated(0.11) possibly_damaging(0.554) TCGA-BH-A0BZ-01 17 73497067 73497067 G C CASKIN2 3'UTR 0.62 TCGA-BH-A0BZ-01 17 73945333 73945333 A G ACOX1 Missense_Mutation p.Y565H 0.09 tolerated(1) benign(0.004) TCGA-BH-A0BZ-01 17 74639652 74639652 G C ST6GALNAC1 Silent p.V23V 0.11 TCGA-BH-A0BZ-01 17 74639894 74639894 C A ST6GALNAC1 5'UTR 0.17 TCGA-BH-A0BZ-01 17 7530899 7530899 T A SAT2 Missense_Mutation p.R19W 0.21 deleterious(0) benign(0.056) TCGA-BH-A0BZ-01 17 77092768 77092768 C T RBFOX3 Silent p.V254V 0.07 TCGA-BH-A0BZ-01 17 80007672 80007672 C T RFNG Missense_Mutation p.D237N 0.11 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 18 13087076 13087076 T C CEP192 Missense_Mutation p.S1893P 0.31 deleterious(0.03) probably_damaging(0.964) TCGA-BH-A0BZ-01 18 14478290 14478290 G T CXADRP3 RNA 0.13 TCGA-BH-A0BZ-01 18 22056805 22056805 T C HRH4 Missense_Mutation p.I151T 0.27 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BZ-01 18 8076452 8076452 G T PTPRM Splice_Site p.X481_splice 0.12 TCGA-BH-A0BZ-01 19 13223523 13223523 T A TRMT1 Missense_Mutation p.E289V 0.16 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BZ-01 19 14589304 14589304 C T GIPC1 Missense_Mutation p.G309D 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A0BZ-01 19 16790895 16790895 G A TMEM38A Silent p.E75E 0.07 TCGA-BH-A0BZ-01 19 16874756 16874756 G C NWD1 Missense_Mutation p.G751R 0.21 deleterious(0) probably_damaging(0.994) TCGA-BH-A0BZ-01 19 1799950 1799950 G T ATP8B3 Silent p.V516V 0.15 TCGA-BH-A0BZ-01 19 18322000 18322000 C T PDE4C Silent p.T626T 0.20 TCGA-BH-A0BZ-01 19 19136141 19136141 T G SUGP2 Missense_Mutation p.H339P 0.16 deleterious(0) probably_damaging(0.986) TCGA-BH-A0BZ-01 19 22362986 22362986 G T ZNF676 Silent p.G511G 0.29 TCGA-BH-A0BZ-01 19 35084403 35084403 G A SCGB2B2 3'UTR 0.18 TCGA-BH-A0BZ-01 19 40095264 40095264 C G LGALS13 Missense_Mutation p.S13C 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-BH-A0BZ-01 19 40316710 40316710 G A DYRK1B Missense_Mutation p.P512L 0.11 tolerated_low_confidence(0.2) benign(0.003) TCGA-BH-A0BZ-01 19 41383175 41383175 T C CYP2A7 Missense_Mutation p.R361G 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 19 42866693 42866693 G C MEGF8 Missense_Mutation p.C1934S 0.16 deleterious(0) probably_damaging(0.998) TCGA-BH-A0BZ-01 19 42866694 42866694 C T MEGF8 Silent p.C1934C 0.16 TCGA-BH-A0BZ-01 19 42880215 42880215 C T MEGF8 Missense_Mutation p.S2542L 0.20 tolerated(0.08) probably_damaging(0.944) TCGA-BH-A0BZ-01 19 46341763 46341763 C A SYMPK Nonsense_Mutation p.E400* 0.19 TCGA-BH-A0BZ-01 19 49206873 49206873 G A FUT2 Silent p.R220R 0.15 TCGA-BH-A0BZ-01 19 51920020 51920020 G T SIGLEC10 Missense_Mutation p.F202L 0.31 tolerated(1) benign(0.048) TCGA-BH-A0BZ-01 19 52472379 52472379 G C ZNF350 Silent p.S7S 0.39 TCGA-BH-A0BZ-01 19 56704353 56704353 T G ZSCAN5B Silent p.P23P 0.16 TCGA-BH-A0BZ-01 19 58005131 58005131 T C ZNF419 Silent p.N403N 0.17 TCGA-BH-A0BZ-01 19 58319607 58319608 - GA ZNF552 Frame_Shift_Ins p.H342Lfs*83 0.18 TCGA-BH-A0BZ-01 19 58352673 58352673 G A ZNF587B Missense_Mutation p.G211R 0.18 tolerated(0.1) benign(0.101) TCGA-BH-A0BZ-01 19 58879905 58879905 G A ZNF837 Silent p.P265P 0.50 TCGA-BH-A0BZ-01 19 8002909 8002909 C T TIMM44 Intron 0.17 TCGA-BH-A0BZ-01 19 9075696 9075714 CCAGATTCCAAGTTTATGT - MUC16 Frame_Shift_Del p.D3911Gfs*35 0.12 TCGA-BH-A0BZ-01 1 100154988 100154988 A T PALMD Missense_Mutation p.D391V 0.14 tolerated(0.14) benign(0.243) TCGA-BH-A0BZ-01 1 101203860 101203860 C T VCAM1 3'UTR 0.14 TCGA-BH-A0BZ-01 1 118003225 118003225 C G MAN1A2 Nonsense_Mutation p.Y355* 0.12 TCGA-BH-A0BZ-01 1 118550690 118550690 C A SPAG17 Missense_Mutation p.A1522S 0.14 deleterious(0.04) probably_damaging(0.921) TCGA-BH-A0BZ-01 1 147851399 147851399 A G LINC01138 RNA 0.22 TCGA-BH-A0BZ-01 1 149755809 149755809 C G FCGR1A Missense_Mutation p.H101Q 0.20 tolerated(0.11) benign(0.118) TCGA-BH-A0BZ-01 1 152328814 152328814 C A FLG2 Missense_Mutation p.G483V 0.25 unknown(0) TCGA-BH-A0BZ-01 1 153028915 153028915 G C SPRR2A 3'UTR 0.14 TCGA-BH-A0BZ-01 1 155029486 155029486 A C ADAM15 Missense_Mutation p.S353R 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 1 1573246 1573246 C A CDK11B Splice_Site p.X451_splice 0.18 TCGA-BH-A0BZ-01 1 1581486 1581486 C T CDK11B Intron 0.08 TCGA-BH-A0BZ-01 1 159785371 159785371 G A FCRL6 Missense_Mutation p.E409K 0.11 tolerated(0.13) benign(0.009) TCGA-BH-A0BZ-01 1 165865490 165865490 C T UCK2 Silent p.F140F 0.13 TCGA-BH-A0BZ-01 1 167971807 167971807 C A DCAF6 Silent p.R331R 0.04 TCGA-BH-A0BZ-01 1 169351347 169351347 C G BLZF1 Missense_Mutation p.T282S 0.21 tolerated(0.22) benign(0.016) TCGA-BH-A0BZ-01 1 169541576 169541585 GAAGTCCTGT - F5 Splice_Site p.X84_splice 0.12 TCGA-BH-A0BZ-01 1 169581541 169581541 C T SELP Missense_Mutation p.C292Y 0.13 deleterious(0) benign(0.315) TCGA-BH-A0BZ-01 1 169672428 169672428 C G SELL Missense_Mutation p.G320A 0.22 deleterious(0.05) probably_damaging(0.96) TCGA-BH-A0BZ-01 1 175331827 175331827 G A TNR Silent p.S942S 0.16 TCGA-BH-A0BZ-01 1 180000592 180000592 G C CEP350 Missense_Mutation p.D1230H 0.13 possibly_damaging(0.895) TCGA-BH-A0BZ-01 1 180885366 180885366 C G KIAA1614 Missense_Mutation p.Q43E 0.14 deleterious(0.01) possibly_damaging(0.716) TCGA-BH-A0BZ-01 1 186014823 186014823 C T HMCN1 Missense_Mutation p.P2103L 0.18 benign(0.12) TCGA-BH-A0BZ-01 1 186413567 186413601 TCTACGGTATTTACGAAGGCAGTTTTCATCCTCTT - PDC Frame_Shift_Del p.K84Tfs*15 0.09 TCGA-BH-A0BZ-01 1 186647505 186647505 A T PTGS2 Silent p.T115T 0.09 TCGA-BH-A0BZ-01 1 203821334 203821334 C T ZC3H11A Missense_Mutation p.S747L 0.30 deleterious(0.05) benign(0.169) TCGA-BH-A0BZ-01 1 220345979 220345979 C T RAB3GAP2 Missense_Mutation p.V806M 0.22 tolerated(0.25) probably_damaging(0.917) TCGA-BH-A0BZ-01 1 228246812 228246812 C T WNT3A Silent p.Y235Y 0.30 TCGA-BH-A0BZ-01 1 231334915 231334915 G A TRIM67 Silent p.K421K 0.11 TCGA-BH-A0BZ-01 1 237693803 237693803 C A RYR2 Missense_Mutation p.P967T 0.25 benign(0.005) TCGA-BH-A0BZ-01 1 240256506 240256506 G T FMN2 Missense_Mutation p.W366L 0.14 unknown(0) TCGA-BH-A0BZ-01 1 248201729 248201729 C A OR2L2 Missense_Mutation p.L54I 0.17 deleterious(0.01) possibly_damaging(0.555) TCGA-BH-A0BZ-01 1 33612949 33612949 G A TRIM62 Silent p.F419F 0.09 TCGA-BH-A0BZ-01 1 33612952 33612952 G A TRIM62 Silent p.V418V 0.08 TCGA-BH-A0BZ-01 1 33990553 33990553 C T CSMD2 Missense_Mutation p.G3298D 0.21 tolerated(0.05) benign(0.006) TCGA-BH-A0BZ-01 1 35453751 35453751 G C ZMYM6 Missense_Mutation p.L978V 0.25 tolerated(0.22) benign(0.033) TCGA-BH-A0BZ-01 1 38040001 38040001 C A GNL2 Missense_Mutation p.R453S 0.26 deleterious(0) probably_damaging(0.961) TCGA-BH-A0BZ-01 1 39905097 39905097 C G MACF1 Silent p.T4065T 0.19 TCGA-BH-A0BZ-01 1 44170179 44170179 C A KDM4A 3'UTR 0.18 TCGA-BH-A0BZ-01 1 52863515 52863534 TCTTAGGAGGAGGATCAGAG - ORC1 Frame_Shift_Del p.D75Efs*13 0.09 TCGA-BH-A0BZ-01 1 85113030 85113030 G C SSX2IP 3'UTR 0.15 TCGA-BH-A0BZ-01 1 92446610 92446610 C G BRDT Missense_Mutation p.P542R 0.29 deleterious(0) possibly_damaging(0.863) TCGA-BH-A0BZ-01 1 9656053 9656053 C G TMEM201 Nonsense_Mutation p.Y73* 0.23 TCGA-BH-A0BZ-01 20 1300251 1300251 G C SDCBP2 Missense_Mutation p.A36G 0.16 tolerated(0.22) benign(0.003) TCGA-BH-A0BZ-01 20 17602175 17602175 C T RRBP1 Silent p.L681L 0.14 TCGA-BH-A0BZ-01 20 17602183 17602183 A T RRBP1 Missense_Mutation p.S679T 0.15 tolerated(0.4) benign(0.294) TCGA-BH-A0BZ-01 20 30354404 30354404 A T TPX2 Missense_Mutation p.E92V 0.12 tolerated(0.18) benign(0.051) TCGA-BH-A0BZ-01 20 30354415 30354415 C T TPX2 Missense_Mutation p.P96S 0.13 tolerated(0.32) benign(0.005) TCGA-BH-A0BZ-01 20 3208935 3208935 G A SLC4A11 Missense_Mutation p.P886L 0.18 deleterious(0) probably_damaging(0.966) TCGA-BH-A0BZ-01 20 32663708 32663708 C A RALY Missense_Mutation p.P136T 0.10 deleterious(0) possibly_damaging(0.597) TCGA-BH-A0BZ-01 20 32677451 32677451 T C EIF2S2 3'UTR 0.20 TCGA-BH-A0BZ-01 20 33369936 33369936 A C NCOA6 Missense_Mutation p.L75V 0.14 probably_damaging(0.996) TCGA-BH-A0BZ-01 20 34144074 34144074 T G ERGIC3 Intron 0.39 TCGA-BH-A0BZ-01 20 34278343 34278343 C A NFS1 Missense_Mutation p.D185Y 0.11 deleterious(0) probably_damaging(0.95) TCGA-BH-A0BZ-01 20 34618474 34618474 T G CNBD2 Nonsense_Mutation p.Y541* 0.10 TCGA-BH-A0BZ-01 20 43881045 43881045 T C SLPI 3'UTR 0.14 TCGA-BH-A0BZ-01 20 44527701 44527701 C T PLTP Missense_Mutation p.G454E 0.20 deleterious(0) probably_damaging(0.989) TCGA-BH-A0BZ-01 20 61303255 61303255 G A SLCO4A1 3'UTR 0.32 TCGA-BH-A0BZ-01 20 62070997 62070997 G T KCNQ2 Missense_Mutation p.A294E 0.41 deleterious(0) probably_damaging(0.979) TCGA-BH-A0BZ-01 21 22906965 22906980 TGACAGAACCTGAGTA - NCAM2 Splice_Site p.X798_splice 0.27 TCGA-BH-A0BZ-01 21 27347382 27347382 C - APP Splice_Site p.X486_splice 0.39 TCGA-BH-A0BZ-01 21 44476914 44476914 C T CBS Silent p.Q517Q 0.16 TCGA-BH-A0BZ-01 21 45993856 45993856 C T KRTAP10-4 Missense_Mutation p.P74L 0.16 deleterious(0.02) unknown(0) TCGA-BH-A0BZ-01 22 18111548 18111548 C G ATP6V1E1 5'UTR 0.19 TCGA-BH-A0BZ-01 22 28497221 28497221 T - TTC28 Frame_Shift_Del p.I1119Ffs*38 0.19 TCGA-BH-A0BZ-01 22 29538189 29538189 C G KREMEN1 Intron 0.39 TCGA-BH-A0BZ-01 22 29611547 29611547 G T EMID1 Missense_Mutation p.V83L 0.16 tolerated(0.16) benign(0.127) TCGA-BH-A0BZ-01 2 113877640 113877640 C G IL1RN Intron 0.14 TCGA-BH-A0BZ-01 2 11911547 11911547 C T LPIN1 Missense_Mutation p.A162V 0.20 tolerated(0.2) benign(0.008) TCGA-BH-A0BZ-01 2 130725797 130725804 AATGTAGA - RAB6C-AS1 RNA 0.28 TCGA-BH-A0BZ-01 2 166611534 166611534 G A GALNT3 Missense_Mutation p.H478Y 0.28 deleterious(0) benign(0.018) TCGA-BH-A0BZ-01 2 170394566 170394566 C G FASTKD1 Missense_Mutation p.Q677H 0.11 tolerated(0.23) probably_damaging(0.985) TCGA-BH-A0BZ-01 2 179238636 179238636 T G OSBPL6 Missense_Mutation p.V497G 0.18 tolerated(0.38) possibly_damaging(0.907) TCGA-BH-A0BZ-01 2 179645892 179645892 T C TTN Missense_Mutation p.N1160S 0.16 TCGA-BH-A0BZ-01 2 198334804 198334804 C G COQ10B Missense_Mutation p.T153S 0.20 tolerated(0.23) probably_damaging(0.978) TCGA-BH-A0BZ-01 2 21230517 21230517 C T APOB Missense_Mutation p.A3075T 0.17 probably_damaging(0.996) TCGA-BH-A0BZ-01 2 21239435 21239435 C G APOB Missense_Mutation p.D1070H 0.19 possibly_damaging(0.897) TCGA-BH-A0BZ-01 2 231331031 231331031 G A SP100 Missense_Mutation p.R386K 0.15 tolerated(0.45) possibly_damaging(0.455) TCGA-BH-A0BZ-01 2 241463462 241463462 C A ANKMY1 Nonsense_Mutation p.E469* 0.22 TCGA-BH-A0BZ-01 2 25655806 25655806 G A DTNB Missense_Mutation p.P469L 0.04 deleterious(0.05) benign(0.132) TCGA-BH-A0BZ-01 2 26534831 26534831 T C GPR113 Missense_Mutation p.T589A 0.31 deleterious(0.04) possibly_damaging(0.654) TCGA-BH-A0BZ-01 2 26950777 26950777 G A KCNK3 Missense_Mutation p.A176T 0.16 deleterious(0.01) possibly_damaging(0.615) TCGA-BH-A0BZ-01 2 27851347 27851347 G - CCDC121 Frame_Shift_Del p.P95Lfs*44 0.17 TCGA-BH-A0BZ-01 2 28521317 28521317 C G BRE Nonsense_Mutation p.Y349* 0.18 TCGA-BH-A0BZ-01 2 31484518 31484527 GCCGGATCGA - EHD3 Frame_Shift_Del p.R341Gfs*13 0.15 TCGA-BH-A0BZ-01 2 37501724 37501724 A G PRKD3 Silent p.V497V 0.37 TCGA-BH-A0BZ-01 2 42281200 42281200 C G PKDCC Missense_Mutation p.L263V 0.12 deleterious(0) probably_damaging(0.98) TCGA-BH-A0BZ-01 2 43937232 43937232 A T PLEKHH2 Missense_Mutation p.K690N 0.28 deleterious(0.01) benign(0.434) TCGA-BH-A0BZ-01 2 44559718 44559718 T A PREPL Silent p.P411P 0.16 TCGA-BH-A0BZ-01 2 47657032 47657032 G A MSH2 Missense_Mutation p.G410S 0.12 tolerated(0.17) benign(0.034) TCGA-BH-A0BZ-01 2 54562103 54562103 C A C2orf73 Missense_Mutation p.A59E 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-BH-A0BZ-01 2 71360505 71360505 A C MPHOSPH10 Missense_Mutation p.K189N 0.31 tolerated(0.12) benign(0.175) TCGA-BH-A0BZ-01 2 84897494 84897494 G A DNAH6 Missense_Mutation p.A2117T 0.10 tolerated(0.13) benign(0.065) TCGA-BH-A0BZ-01 2 98409038 98409038 C A TMEM131 Nonsense_Mutation p.E1319* 0.13 TCGA-BH-A0BZ-01 2 98994171 98994171 G C CNGA3 Missense_Mutation p.E41D 0.28 tolerated_low_confidence(1) benign(0.002) TCGA-BH-A0BZ-01 3 124731512 124731512 G A HEG1 Nonsense_Mutation p.Q971* 0.20 TCGA-BH-A0BZ-01 3 127292331 127292331 T C TPRA1 3'UTR 0.28 TCGA-BH-A0BZ-01 3 130463374 130463374 C G PIK3R4 Missense_Mutation p.R230T 0.17 tolerated(0.39) benign(0.415) TCGA-BH-A0BZ-01 3 133306840 133306840 C T CDV3 Nonsense_Mutation p.Q243* 0.14 TCGA-BH-A0BZ-01 3 156547155 156547155 G C LEKR1 Missense_Mutation p.E13Q 0.16 deleterious(0.01) benign(0.077) TCGA-BH-A0BZ-01 3 182635874 182635894 GGACTCATCTACTTGTTAAAG - ATP11B Missense_Mutation 0.14 TCGA-BH-A0BZ-01 3 183967122 183967122 T G ALG3 5'Flank 0.15 TCGA-BH-A0BZ-01 3 190366442 190366442 G A IL1RAP Intron 0.55 TCGA-BH-A0BZ-01 3 37778446 37778446 G A ITGA9 Missense_Mutation p.V736I 0.16 tolerated(0.34) benign(0.002) TCGA-BH-A0BZ-01 3 39306801 39306801 A G CX3CR1 3'UTR 0.36 TCGA-BH-A0BZ-01 3 44488954 44488954 G A ZNF445 Missense_Mutation p.P737S 0.28 tolerated(0.1) unknown(0) TCGA-BH-A0BZ-01 3 44763288 44763288 G A ZNF502 Missense_Mutation p.E327K 0.09 tolerated(0.11) benign(0.085) TCGA-BH-A0BZ-01 3 46008278 46008278 C G FYCO1 Missense_Mutation p.E850Q 0.13 deleterious(0.03) possibly_damaging(0.765) TCGA-BH-A0BZ-01 3 49166019 49166019 C T LAMB2 Splice_Site p.X631_splice 0.32 TCGA-BH-A0BZ-01 3 57994300 57994306 AACCGAG - FLNB Frame_Shift_Del p.T4Rfs*3 0.21 TCGA-BH-A0BZ-01 4 122590856 122590856 G C ANXA5 Silent p.T268T 0.16 TCGA-BH-A0BZ-01 4 147104112 147104112 G A LSM6 Silent p.K13K 0.15 TCGA-BH-A0BZ-01 4 15054069 15054069 C G CPEB2 Silent p.G744G 0.12 TCGA-BH-A0BZ-01 4 154243810 154243810 G T TRIM2 Missense_Mutation p.G598V 0.24 deleterious(0) probably_damaging(0.97) TCGA-BH-A0BZ-01 4 71859533 71859533 G T DCK 5'UTR 0.19 TCGA-BH-A0BZ-01 4 85672736 85672736 G A WDFY3 Missense_Mutation p.A1958V 0.20 tolerated(0.15) benign(0.222) TCGA-BH-A0BZ-01 5 1073778 1073778 G T SLC12A7 Missense_Mutation p.D737E 0.16 tolerated(0.43) benign(0.013) TCGA-BH-A0BZ-01 5 1073784 1073784 G A SLC12A7 Silent p.Y735Y 0.24 TCGA-BH-A0BZ-01 5 11117663 11117663 C G CTNND2 Missense_Mutation p.G726R 0.10 tolerated(0.11) probably_damaging(0.986) TCGA-BH-A0BZ-01 5 115813549 115813559 TGGGTGATAAA - SEMA6A Frame_Shift_Del p.H544Qfs*7 0.18 TCGA-BH-A0BZ-01 5 132038596 132038596 C A KIF3A Missense_Mutation p.R516I 0.16 deleterious(0.01) benign(0.024) TCGA-BH-A0BZ-01 5 132535018 132535018 C T FSTL4 Silent p.L766L 0.19 TCGA-BH-A0BZ-01 5 135388753 135388753 C G TGFBI Missense_Mutation p.I357M 0.17 deleterious(0.02) possibly_damaging(0.486) TCGA-BH-A0BZ-01 5 140480788 140480788 T C PCDHB3 Silent p.R185R 0.15 TCGA-BH-A0BZ-01 5 140789181 140789181 T G PCDHGB6 Missense_Mutation p.I471S 0.15 deleterious(0) probably_damaging(0.989) TCGA-BH-A0BZ-01 5 140867095 140867096 - ATG PCDHGC4 In_Frame_Ins p.M787dup 0.26 TCGA-BH-A0BZ-01 5 168199824 168199824 C T SLIT3 Missense_Mutation p.R474H 0.14 deleterious(0) probably_damaging(0.997) TCGA-BH-A0BZ-01 5 175110861 175110861 G A HRH2 Missense_Mutation p.A209T 0.14 deleterious(0.02) probably_damaging(1) TCGA-BH-A0BZ-01 5 179301921 179301921 C A TBC1D9B Missense_Mutation p.A723S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BZ-01 5 77072094 77072094 G A TBCA 5'UTR 0.15 TCGA-BH-A0BZ-01 5 78338282 78338282 C A DMGDH Missense_Mutation p.E339D 0.17 tolerated(0.07) possibly_damaging(0.464) TCGA-BH-A0BZ-01 6 13327131 13327131 A G TBC1D7 5'UTR 0.17 TCGA-BH-A0BZ-01 6 152651269 152651293 AAGCCAAGGGGTCAAGGTGTGGGGC - SYNE1 Frame_Shift_Del p.A4843Mfs*15 0.25 TCGA-BH-A0BZ-01 6 160212096 160212096 A T MRPL18 Missense_Mutation p.L59F 0.12 deleterious(0.02) probably_damaging(0.945) TCGA-BH-A0BZ-01 6 26123825 26123825 A G HIST1H2BC Missense_Mutation p.L103P 0.13 deleterious_low_confidence(0.01) benign(0.433) TCGA-BH-A0BZ-01 6 33248475 33248475 C G WDR46 Missense_Mutation p.G469R 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 6 33371093 33371093 C G KIFC1 Missense_Mutation p.Q85E 0.12 tolerated(0.73) benign(0.09) TCGA-BH-A0BZ-01 6 42652568 42652568 A G UBR2 Silent p.P1604P 0.34 TCGA-BH-A0BZ-01 6 52616434 52616434 G A GSTA2 Missense_Mutation p.L163F 0.14 tolerated(0.2) benign(0.157) TCGA-BH-A0BZ-01 6 55120040 55120040 G A HCRTR2 Missense_Mutation p.R170H 0.30 deleterious(0.01) possibly_damaging(0.87) TCGA-BH-A0BZ-01 7 127253832 127253832 G C PAX4 Missense_Mutation p.S172R 0.07 tolerated(0.29) benign(0.002) TCGA-BH-A0BZ-01 7 148718210 148718210 C T PDIA4 Missense_Mutation p.D40N 0.14 tolerated_low_confidence(0.07) benign(0.014) TCGA-BH-A0BZ-01 7 150493704 150493704 G A TMEM176B Intron 0.14 TCGA-BH-A0BZ-01 7 150752155 150752155 A G CDK5 Silent p.F203F 0.11 TCGA-BH-A0BZ-01 7 150769218 150769218 G C SLC4A2 Missense_Mutation p.V844L 0.13 tolerated(0.3) benign(0.024) TCGA-BH-A0BZ-01 7 1527563 1527563 C T INTS1 Silent p.T783T 0.12 TCGA-BH-A0BZ-01 7 32528913 32528913 C T LSM5 Missense_Mutation p.M30I 0.14 deleterious(0.02) possibly_damaging(0.695) TCGA-BH-A0BZ-01 7 42977182 42977182 A C MRPL32 3'UTR 0.14 TCGA-BH-A0BZ-01 7 44737330 44737330 G T OGDH Missense_Mutation p.W769C 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 7 70251001 70251001 G T AUTS2 Missense_Mutation p.G762V 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 7 81598259 81598259 A G CACNA2D1 Missense_Mutation p.I780T 0.37 deleterious(0) possibly_damaging(0.514) TCGA-BH-A0BZ-01 7 91711909 91711909 C G AKAP9 Nonsense_Mutation p.S2698* 0.10 TCGA-BH-A0BZ-01 7 92134195 92134198 TGTA - PEX1 Frame_Shift_Del p.I640Kfs*4 0.08 TCGA-BH-A0BZ-01 7 94043009 94043009 C T COL1A2 Missense_Mutation p.P522L 0.15 unknown(0) TCGA-BH-A0BZ-01 8 110255347 110255347 G C NUDCD1 Missense_Mutation p.A548G 0.11 deleterious(0.01) benign(0.097) TCGA-BH-A0BZ-01 8 117767908 117767908 G A EIF3H Silent p.G43G 0.07 TCGA-BH-A0BZ-01 8 123966226 123966226 G C ZHX2 Missense_Mutation p.D826H 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A0BZ-01 8 125078724 125078724 A G FER1L6 Missense_Mutation p.D1204G 0.06 deleterious(0) probably_damaging(0.999) TCGA-BH-A0BZ-01 8 131792675 131792675 T C ADCY8 Silent p.G1239G 0.08 TCGA-BH-A0BZ-01 8 134034236 134034236 G A TG Missense_Mutation p.A2293T 0.12 tolerated(0.12) benign(0.063) TCGA-BH-A0BZ-01 8 144464070 144464070 G T RHPN1 Missense_Mutation p.A577S 0.09 tolerated(1) benign(0.03) TCGA-BH-A0BZ-01 8 145641794 145641794 G A SLC39A4 Intron 0.16 TCGA-BH-A0BZ-01 8 146003867 146003867 T C ZNF34 Missense_Mutation p.N18S 0.06 tolerated(0.72) benign(0) TCGA-BH-A0BZ-01 8 2026951 2026951 C G MYOM2 Missense_Mutation p.R467G 0.14 deleterious(0.04) benign(0.13) TCGA-BH-A0BZ-01 8 23538848 23538848 C G NKX3-1 Missense_Mutation p.L197F 0.14 tolerated(0.05) benign(0.033) TCGA-BH-A0BZ-01 8 26149315 26149315 G T PPP2R2A 5'Flank 0.38 TCGA-BH-A0BZ-01 8 30705392 30705392 G T TEX15 Missense_Mutation p.A381D 0.21 tolerated(0.07) benign(0.015) TCGA-BH-A0BZ-01 8 35583693 35583693 G T UNC5D Missense_Mutation p.A443S 0.14 tolerated(1) benign(0) TCGA-BH-A0BZ-01 8 38123635 38123657 CCATAGCCTGAGTACTTTGCTTA - PPAPDC1B Splice_Site p.X212_splice 0.30 TCGA-BH-A0BZ-01 8 42171889 42171889 G T IKBKB Missense_Mutation p.D248Y 0.13 deleterious(0) probably_damaging(0.994) TCGA-BH-A0BZ-01 8 66619371 66619371 G C MTFR1 Missense_Mutation p.R215T 0.16 deleterious(0) benign(0.314) TCGA-BH-A0BZ-01 8 67484779 67484779 G C MYBL1 Missense_Mutation p.P556A 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 8 71487165 71487165 C T TRAM1 3'UTR 0.06 TCGA-BH-A0BZ-01 8 98817690 98817690 C T LAPTM4B Missense_Mutation p.A161V 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A0BZ-01 8 99161077 99161077 C T POP1 Missense_Mutation p.P582L 0.06 deleterious(0) probably_damaging(1) TCGA-BH-A0BZ-01 9 101470750 101470750 G A GABBR2 Silent p.N90N 0.17 TCGA-BH-A0BZ-01 9 104238305 104238305 T C TMEM246 Missense_Mutation p.H357R 0.15 tolerated(0.72) benign(0) TCGA-BH-A0BZ-01 9 119460147 119460147 C T TRIM32 Silent p.T42T 0.09 TCGA-BH-A0BZ-01 9 120475509 120475509 C A TLR4 Nonsense_Mutation p.S368* 0.11 TCGA-BH-A0BZ-01 9 120476776 120476776 C A TLR4 Missense_Mutation p.S790R 0.20 tolerated(1) benign(0.364) TCGA-BH-A0BZ-01 9 122000956 122000956 G A BRINP1 Missense_Mutation p.T221M 0.15 deleterious(0.04) benign(0.002) TCGA-BH-A0BZ-01 9 126776287 126776288 - A LHX2 Frame_Shift_Ins p.G57Rfs*43 0.27 TCGA-BH-A0BZ-01 9 21077514 21077514 G A IFNB1 Silent p.L119L 0.13 TCGA-BH-A0BZ-01 9 35105147 35105147 T C FAM214B 3'UTR 0.40 TCGA-BH-A0BZ-01 9 35650368 35650368 T A SIT1 Missense_Mutation p.H94L 0.34 tolerated(0.06) benign(0.232) TCGA-BH-A0BZ-01 9 35869718 35869718 C T OR13J1 Silent p.R227R 0.32 TCGA-BH-A0BZ-01 9 39144292 39144292 G T CNTNAP3 Missense_Mutation p.D567E 0.12 deleterious(0.02) benign(0.269) TCGA-BH-A0BZ-01 X 13054986 13054986 G T FAM9C 3'UTR 0.17 TCGA-BH-A0BZ-01 X 15315804 15315805 - TATAATA ASB11 Splice_Site p.X88_splice 0.09 TCGA-BH-A0BZ-01 X 21886678 21886678 G C MBTPS2 Missense_Mutation p.G255A 0.32 tolerated(0.1) probably_damaging(0.973) TCGA-BH-A0BZ-01 X 32503137 32503137 C A DMD Missense_Mutation p.G901V 0.34 probably_damaging(0.996) TCGA-BH-A0BZ-01 X 48661392 48661392 G A HDAC6 Missense_Mutation p.G70R 0.14 deleterious(0.03) benign(0.212) TCGA-BH-A0BZ-01 X 53617397 53617397 A T HUWE1 Missense_Mutation p.D1386E 0.18 benign(0.011) TCGA-BH-A0BZ-01 X 70384048 70384048 G C NLGN3 Missense_Mutation p.Q261H 0.19 deleterious(0) probably_damaging(0.976) TCGA-BH-A0BZ-01 X 78616643 78616643 C T ITM2A Nonsense_Mutation p.W245* 0.12 TCGA-BH-A0C0-01 10 43597801 43597801 C A RET Missense_Mutation p.P117T 0.11 deleterious_low_confidence(0.01) benign(0.005) TCGA-BH-A0C0-01 11 100862913 100862913 G T TMEM133 5'UTR 0.23 TCGA-BH-A0C0-01 11 56143625 56143625 C A OR8U1 Missense_Mutation p.H176N 0.10 deleterious(0) probably_damaging(0.999) TCGA-BH-A0C0-01 11 78423693 78423693 G T TENM4 Missense_Mutation p.D1296E 0.26 deleterious(0.04) benign(0.062) TCGA-BH-A0C0-01 12 113552621 113552621 C G RASAL1 Missense_Mutation p.D389H 0.35 deleterious(0) possibly_damaging(0.89) TCGA-BH-A0C0-01 12 5021590 5021590 C T KCNA1 Missense_Mutation p.A349V 0.20 tolerated(0.4) benign(0.012) TCGA-BH-A0C0-01 13 110847369 110847369 C A COL4A1 Splice_Site p.X461_splice 0.18 TCGA-BH-A0C0-01 14 53119001 53119001 T C ERO1L Missense_Mutation p.N361D 0.12 tolerated(0.22) possibly_damaging(0.761) TCGA-BH-A0C0-01 15 68643690 68643690 A G ITGA11 Missense_Mutation p.I267T 0.16 deleterious(0) possibly_damaging(0.884) TCGA-BH-A0C0-01 16 20788842 20788842 C T ACSM3 Missense_Mutation p.S193F 0.16 tolerated(0.08) benign(0.006) TCGA-BH-A0C0-01 17 31260274 31260274 C A TMEM98 Missense_Mutation p.P72T 0.07 deleterious(0.03) possibly_damaging(0.876) TCGA-BH-A0C0-01 17 38955885 38955885 C A KRT28 Missense_Mutation p.K87N 0.05 deleterious(0) probably_damaging(0.994) TCGA-BH-A0C0-01 17 41738695 41738695 T G MEOX1 Missense_Mutation p.T70P 0.10 tolerated(0.15) benign(0.004) TCGA-BH-A0C0-01 17 44073950 44073950 G A MAPT Missense_Mutation p.V583M 0.20 deleterious(0.03) probably_damaging(0.924) TCGA-BH-A0C0-01 17 66246405 66246405 A G AMZ2 Missense_Mutation p.Y26C 0.12 deleterious(0) probably_damaging(0.99) TCGA-BH-A0C0-01 17 7579359 7579359 G - TP53 Frame_Shift_Del p.R110Vfs*13 0.31 TCGA-BH-A0C0-01 1 150471707 150471707 C A TARS2 Missense_Mutation p.L519M 0.06 deleterious(0.02) possibly_damaging(0.817) TCGA-BH-A0C0-01 1 154744661 154744661 A G KCNN3 Missense_Mutation p.L413P 0.07 deleterious(0) probably_damaging(0.999) TCGA-BH-A0C0-01 1 163044344 163044344 T A RGS4 Nonsense_Mutation p.C301* 0.23 TCGA-BH-A0C0-01 1 183177174 183177174 C T LAMC2 Missense_Mutation p.R80C 0.17 tolerated(0.16) benign(0.027) TCGA-BH-A0C0-01 1 201845219 201845219 A T IPO9 3'UTR 0.20 TCGA-BH-A0C0-01 1 210573999 210573999 A C HHAT Missense_Mutation p.E155A 0.22 tolerated(0.13) possibly_damaging(0.557) TCGA-BH-A0C0-01 1 212911865 212911865 G C NSL1 Missense_Mutation p.T244R 0.19 tolerated(0.1) possibly_damaging(0.653) TCGA-BH-A0C0-01 1 3672038 3672038 G A CCDC27 Missense_Mutation p.D154N 0.25 tolerated(0.32) benign(0.12) TCGA-BH-A0C0-01 20 10394172 10394172 G T MKKS 5'UTR 0.11 TCGA-BH-A0C0-01 20 30253684 30253684 C T BCL2L1 3'UTR 0.18 TCGA-BH-A0C0-01 21 45499985 45499985 C T TRAPPC10 Missense_Mutation p.A567V 0.11 tolerated(0.06) benign(0.066) TCGA-BH-A0C0-01 22 24134048 24134048 T C SMARCB1 Missense_Mutation p.S67P 0.05 deleterious_low_confidence(0.02) benign(0.397) TCGA-BH-A0C0-01 22 29945112 29945112 G C THOC5 Missense_Mutation p.R9G 0.20 deleterious(0) benign(0.011) TCGA-BH-A0C0-01 2 192700775 192700775 T G SDPR Silent p.S384S 0.08 TCGA-BH-A0C0-01 2 36994370 36994370 T C VIT Silent p.A207A 0.10 TCGA-BH-A0C0-01 2 79363132 79363132 C T REG1P RNA 0.22 TCGA-BH-A0C0-01 3 121340395 121340395 T G FBXO40 Missense_Mutation p.L40R 0.15 tolerated(0.17) benign(0.188) TCGA-BH-A0C0-01 3 17448098 17448098 T A TBC1D5 Intron 0.11 TCGA-BH-A0C0-01 3 19959819 19959819 C T EFHB Missense_Mutation p.R361Q 0.19 tolerated(1) benign(0.002) TCGA-BH-A0C0-01 5 170380678 170380678 G A RANBP17 Missense_Mutation p.D516N 0.20 deleterious(0.05) benign(0.011) TCGA-BH-A0C0-01 6 121481215 121481215 G A TBC1D32 Missense_Mutation p.S905L 0.14 deleterious(0) possibly_damaging(0.782) TCGA-BH-A0C0-01 6 153293436 153293436 T G FBXO5 Missense_Mutation p.T355P 0.11 tolerated(0.14) benign(0.01) TCGA-BH-A0C0-01 6 155752041 155752041 A G NOX3 Missense_Mutation p.V276A 0.07 tolerated(0.14) benign(0.285) TCGA-BH-A0C0-01 7 137600703 137600703 G C CREB3L2 Missense_Mutation p.I125M 0.10 tolerated(0.11) benign(0.4) TCGA-BH-A0C0-01 8 38677317 38677317 C A TACC1 Silent p.S185S 0.23 TCGA-BH-A0C0-01 8 52384840 52384840 G A PXDNL Missense_Mutation p.P240L 0.06 deleterious(0) probably_damaging(1) TCGA-BH-A0C0-01 8 67925207 67925207 G A PPP1R42 Missense_Mutation p.L141F 0.09 deleterious(0) possibly_damaging(0.645) TCGA-BH-A0C0-01 8 81888875 81888875 G T PAG1 Silent p.T401T 0.06 TCGA-BH-A0C0-01 8 95403909 95403909 A C RAD54B Missense_Mutation p.S579R 0.06 deleterious(0.04) possibly_damaging(0.908) TCGA-BH-A0C0-01 9 115449879 115449879 G C INIP Missense_Mutation p.T85S 0.03 tolerated(0.14) benign(0.008) TCGA-BH-A0C0-01 9 32633233 32633233 A T TAF1L Missense_Mutation p.L782Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-BH-A0C0-01 9 69385951 69385951 G A ANKRD20A4 Missense_Mutation p.D130N 0.28 deleterious(0) probably_damaging(0.996) TCGA-BH-A0C0-01 9 84533180 84533180 C A SPATA31D5P RNA 0.07 TCGA-BH-A0C1-01 10 105801282 105801282 G A COL17A1 Nonsense_Mutation p.Q856* 0.15 TCGA-BH-A0C1-01 10 27436575 27436575 G A YME1L1 Missense_Mutation p.T64M 0.40 tolerated_low_confidence(0.13) benign(0.015) TCGA-BH-A0C1-01 10 5945053 5945053 G A FBXO18 Silent p.V75V 0.17 TCGA-BH-A0C1-01 11 102100570 102100570 C T YAP1 Missense_Mutation p.P472S 0.18 deleterious(0.03) possibly_damaging(0.902) TCGA-BH-A0C1-01 11 55418854 55418854 G A OR4S2 Missense_Mutation p.A159T 0.37 tolerated(0.07) benign(0.058) TCGA-BH-A0C1-01 11 8161556 8161556 G A RIC3 Silent p.Y103Y 0.14 TCGA-BH-A0C1-01 12 128899678 128899678 G A TMEM132C Missense_Mutation p.A163T 0.45 tolerated(0.33) benign(0.022) TCGA-BH-A0C1-01 12 45567613 45567613 C A PLEKHA8P1 RNA 0.12 TCGA-BH-A0C1-01 12 56994194 56994216 GATATCCTCCTGGGAGTCGGAGA - BAZ2A Frame_Shift_Del p.L1556Hfs*15 0.42 TCGA-BH-A0C1-01 15 81171141 81171141 C T KIAA1199 Silent p.I58I 0.14 TCGA-BH-A0C1-01 16 28898853 28898853 G A ATP2A1 Silent p.K246K 0.14 TCGA-BH-A0C1-01 16 28898886 28898886 G A ATP2A1 Silent p.G257G 0.17 TCGA-BH-A0C1-01 16 28898892 28898892 G A ATP2A1 Silent p.Q259Q 0.18 TCGA-BH-A0C1-01 16 46695632 46695632 C T VPS35 Missense_Mutation p.A737T 0.26 tolerated(0.31) benign(0.001) TCGA-BH-A0C1-01 16 67190466 67190466 G A TRADD Missense_Mutation p.A33V 0.18 tolerated(0.2) benign(0) TCGA-BH-A0C1-01 16 68842414 68842414 C - CDH1 Frame_Shift_Del p.P159Lfs*56 0.31 TCGA-BH-A0C1-01 17 37881000 37881000 G C ERBB2 Missense_Mutation p.V777L 0.38 deleterious(0.05) benign(0.006) TCGA-BH-A0C1-01 18 72103540 72103540 C T FAM69C 3'UTR 0.36 TCGA-BH-A0C1-01 19 4311945 4311945 G A FSD1 Silent p.V199V 0.28 TCGA-BH-A0C1-01 19 46842838 46842838 G A HIF3A Missense_Mutation p.G657S 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-BH-A0C1-01 19 52569331 52569331 A C ZNF841 Missense_Mutation p.C602G 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0C1-01 1 10714168 10714168 T C CASZ1 Missense_Mutation p.Y649C 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-BH-A0C1-01 1 113217527 113217527 C G MOV10 5'UTR 0.40 TCGA-BH-A0C1-01 1 12476856 12476856 C T VPS13D Silent p.H4103H 0.18 TCGA-BH-A0C1-01 1 149858180 149858180 G A HIST2H2BE Missense_Mutation p.P4L 0.60 tolerated_low_confidence(0.25) unknown(0) TCGA-BH-A0C1-01 1 175113668 175113668 G A TNN Silent p.G1247G 0.08 TCGA-BH-A0C1-01 1 228437863 228437863 C A OBSCN Missense_Mutation p.Q1503K 0.04 probably_damaging(0.991) TCGA-BH-A0C1-01 1 53537273 53537273 C T PODN Silent p.L175L 0.20 TCGA-BH-A0C1-01 1 65120486 65120486 G A CACHD1 Missense_Mutation p.M543I 0.47 tolerated(0.07) benign(0.003) TCGA-BH-A0C1-01 20 35569477 35569477 G A SAMHD1 Nonsense_Mutation p.Q105* 0.07 TCGA-BH-A0C1-01 21 36252958 36252958 C T RUNX1 Missense_Mutation p.G135D 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A0C1-01 21 47836277 47836277 G A PCNT Missense_Mutation p.A2149T 0.15 possibly_damaging(0.499) TCGA-BH-A0C1-01 2 234201936 234201936 G A ATG16L1 Missense_Mutation p.E555K 0.51 deleterious(0) benign(0.43) TCGA-BH-A0C1-01 3 105397361 105397361 G A CBLB Missense_Mutation p.A828V 0.15 tolerated_low_confidence(0.4) benign(0.031) TCGA-BH-A0C1-01 3 179137206 179137206 G T GNB4 Missense_Mutation p.H62N 0.11 tolerated(0.1) possibly_damaging(0.604) TCGA-BH-A0C1-01 3 179137207 179137207 C T GNB4 Missense_Mutation p.M61I 0.11 tolerated(0.06) benign(0.007) TCGA-BH-A0C1-01 3 47467065 47467065 G A SCAP Missense_Mutation p.A316V 0.16 deleterious(0) probably_damaging(0.943) TCGA-BH-A0C1-01 4 148575485 148575485 T C PRMT10 Silent p.E521E 0.35 TCGA-BH-A0C1-01 5 109183450 109183450 C T MAN2A1 Silent p.L979L 0.29 TCGA-BH-A0C1-01 5 26881153 26881153 G A CDH9 3'UTR 0.27 TCGA-BH-A0C1-01 6 31741200 31741200 C T VWA7 Missense_Mutation p.G246R 0.37 deleterious(0) probably_damaging(1) TCGA-BH-A0C1-01 6 76657138 76657138 G A IMPG1 Missense_Mutation p.P646L 0.10 deleterious(0) probably_damaging(0.988) TCGA-BH-A0C1-01 7 43484146 43484146 G T HECW1 Missense_Mutation p.A459S 0.29 tolerated_low_confidence(0.26) benign(0.006) TCGA-BH-A0C1-01 7 50198782 50198782 C T C7orf72 3'UTR 0.38 TCGA-BH-A0C1-01 7 6541690 6541690 C T GRID2IP Silent p.S1070S 0.13 TCGA-BH-A0C1-01 7 6730787 6730787 G A ZNF12 Nonsense_Mutation p.Q596* 0.11 TCGA-BH-A0C1-01 8 144662795 144662795 C T EEF1D Missense_Mutation p.E531K 0.35 deleterious(0.03) possibly_damaging(0.644) TCGA-BH-A0C1-01 8 145584130 145584130 C - SLC52A2 Frame_Shift_Del p.L327Wfs*27 0.37 TCGA-BH-A0C1-01 9 95027830 95027830 T A IARS Silent p.V479V 0.19 TCGA-BH-A0C1-01 X 10085452 10085452 G A WWC3 Silent p.S451S 0.16 TCGA-BH-A0C1-01 X 10534972 10534972 C T MID1 Missense_Mutation p.D206N 0.20 tolerated(0.3) benign(0.442) TCGA-BH-A0C1-01 X 151899975 151899975 T G MAGEA12 Silent p.R276R 0.15 TCGA-BH-A0C1-01 X 67940160 67940160 C T STARD8 Silent p.H648H 0.17 TCGA-BH-A0C3-01 12 2791713 2791713 T C CACNA1C Intron 0.17 TCGA-BH-A0C3-01 14 36841155 36841155 G T DPPA3P2 RNA 0.14 TCGA-BH-A0C3-01 15 99456511 99456511 G A IGF1R Missense_Mutation p.V610I 0.17 tolerated(0.09) benign(0.009) TCGA-BH-A0C3-01 17 7259963 7259963 A C TMEM95 3'UTR 0.20 TCGA-BH-A0C3-01 17 7578371 7578371 C T TP53 Missense_Mutation p.G187S 0.24 tolerated(0.21) possibly_damaging(0.528) TCGA-BH-A0C3-01 18 43534880 43534880 G A EPG5 Missense_Mutation p.T163I 0.18 tolerated_low_confidence(0.58) benign(0.002) TCGA-BH-A0C3-01 1 158059318 158059318 G T KIRREL Silent p.L357L 0.22 TCGA-BH-A0C3-01 1 165872480 165872480 G C UCK2 Silent p.T187T 0.17 TCGA-BH-A0C3-01 1 23650213 23650213 T G HNRNPR Missense_Mutation p.K171Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-BH-A0C3-01 21 33076187 33076187 C T SCAF4 Missense_Mutation p.R71Q 0.08 probably_damaging(0.999) TCGA-BH-A0C3-01 21 36231791 36231791 T C RUNX1 Missense_Mutation p.D198G 0.19 deleterious(0) possibly_damaging(0.734) TCGA-BH-A0C3-01 3 4856841 4856841 T C ITPR1 Silent p.A2587A 0.20 TCGA-BH-A0C3-01 6 166825174 166825174 C T RPS6KA2 3'UTR 0.21 TCGA-BH-A0C3-01 6 166912078 166912078 G A RPS6KA2 Missense_Mutation p.T230M 0.25 deleterious(0) probably_damaging(0.995) TCGA-BH-A0C3-01 7 150911081 150911081 T G ABCF2 Intron 0.54 TCGA-BH-A0C3-01 8 22973124 22973124 T C TNFRSF10C Silent p.C128C 0.15 TCGA-BH-A0C3-01 9 109771874 109771874 G A ZNF462 Missense_Mutation p.R2413H 0.22 probably_damaging(0.994) TCGA-BH-A0C3-01 X 11316986 11316986 C T AMELX Nonsense_Mutation p.Q169* 0.19 TCGA-BH-A0C3-01 X 17745442 17745443 TA - NHS Frame_Shift_Del p.S1053Tfs*3 0.21 TCGA-BH-A0C7-01 10 8111503 8111507 GGAAT AGA GATA3 Frame_Shift_Del p.R331Kfs*21 0.18 TCGA-BH-A0C7-01 12 10170457 10170457 G A CLEC12B Intron 0.35 TCGA-BH-A0C7-01 12 123892232 123892232 C A SETD8 Missense_Mutation p.H347Q 0.33 deleterious(0) possibly_damaging(0.861) TCGA-BH-A0C7-01 13 48936989 48936989 C - RB1 Frame_Shift_Del p.R254Gfs*10 0.36 TCGA-BH-A0C7-01 13 95696580 95696580 G T ABCC4 Missense_Mutation p.A1190E 0.12 deleterious(0.02) possibly_damaging(0.654) TCGA-BH-A0C7-01 14 24586235 24586235 G T DCAF11 Missense_Mutation p.D89Y 0.15 deleterious(0.01) possibly_damaging(0.721) TCGA-BH-A0C7-01 15 42985247 42985247 C T STARD9 Missense_Mutation p.A3824V 0.06 possibly_damaging(0.733) TCGA-BH-A0C7-01 16 10525101 10525101 A G ATF7IP2 Silent p.E208E 0.04 TCGA-BH-A0C7-01 16 49671762 49671762 G A ZNF423 Missense_Mutation p.A434V 0.30 tolerated(0.3) benign(0.003) TCGA-BH-A0C7-01 16 57760088 57760088 C T CCDC135 Missense_Mutation p.R623C 0.17 deleterious(0.02) benign(0.049) TCGA-BH-A0C7-01 16 57994814 57994814 C T CNGB1 Missense_Mutation p.G155E 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-BH-A0C7-01 16 77353947 77353947 G A ADAMTS18 Silent p.I777I 0.19 TCGA-BH-A0C7-01 16 89696849 89696849 G T DPEP1 Missense_Mutation p.V11L 0.20 tolerated(0.4) benign(0.006) TCGA-BH-A0C7-01 17 12044492 12044525 AACGTGCCGTTGAGGTCGCATGCTATGTTTGTAA - MAP2K4 Frame_Shift_Del p.R373Sfs*29 0.22 TCGA-BH-A0C7-01 17 35470121 35470121 G A ACACA Silent p.Y2118Y 0.10 TCGA-BH-A0C7-01 17 62130285 62130285 C T ERN1 Missense_Mutation p.G703D 0.26 deleterious(0) benign(0.344) TCGA-BH-A0C7-01 19 18119536 18119536 G A ARRDC2 Silent p.T97T 0.22 TCGA-BH-A0C7-01 19 20230194 20230194 A G ZNF90 3'UTR 0.31 TCGA-BH-A0C7-01 19 46417819 46417819 C T NANOS2 Missense_Mutation p.G45R 0.08 tolerated(0.4) benign(0.004) TCGA-BH-A0C7-01 19 48571096 48571096 C T PLA2G4C Missense_Mutation p.A362T 0.15 tolerated(0.28) benign(0.068) TCGA-BH-A0C7-01 19 8577297 8577297 C A ZNF414 Silent p.L168L 0.12 TCGA-BH-A0C7-01 1 147126324 147126324 G A ACP6 Silent p.N255N 0.09 TCGA-BH-A0C7-01 1 16261573 16261573 G A SPEN Silent p.Q2946Q 0.21 TCGA-BH-A0C7-01 1 169770035 169770035 A T C1orf112 5'UTR 0.10 TCGA-BH-A0C7-01 1 243289814 243289814 G A CEP170 Silent p.F1564F 0.62 TCGA-BH-A0C7-01 1 55474123 55474123 C T BSND Missense_Mutation p.A262V 0.24 tolerated(0.28) benign(0.014) TCGA-BH-A0C7-01 20 23016498 23016498 C T SSTR4 Silent p.D126D 0.49 TCGA-BH-A0C7-01 20 37357024 37357024 C T SLC32A1 Silent p.V440V 0.14 TCGA-BH-A0C7-01 21 33686921 33686921 C G MRAP 3'Flank 0.19 TCGA-BH-A0C7-01 22 30054223 30054223 G C NF2 Missense_Mutation p.E215D 0.29 tolerated(0.61) benign(0.008) TCGA-BH-A0C7-01 22 31322675 31322675 T A MORC2 3'UTR 0.13 TCGA-BH-A0C7-01 22 31740705 31740705 C A PATZ1 Missense_Mutation p.G295V 0.12 deleterious(0.01) probably_damaging(1) TCGA-BH-A0C7-01 2 166900252 166900252 G T SCN1A Missense_Mutation p.P657H 0.37 tolerated(0.08) benign(0.208) TCGA-BH-A0C7-01 2 179407626 179407626 G A TTN Missense_Mutation p.P32319S 0.07 TCGA-BH-A0C7-01 2 228137792 228137792 C T COL4A3 Missense_Mutation p.T629M 0.43 unknown(0) TCGA-BH-A0C7-01 2 234343513 234343513 G T DGKD Silent p.L184L 0.16 TCGA-BH-A0C7-01 3 119361398 119361398 A C POPDC2 Missense_Mutation p.I340M 0.17 tolerated_low_confidence(0.16) benign(0.17) TCGA-BH-A0C7-01 3 126741184 126741184 G A PLXNA1 Missense_Mutation p.R1432Q 0.14 deleterious(0) probably_damaging(0.979) TCGA-BH-A0C7-01 3 130095337 130095337 C A COL6A5 Missense_Mutation p.Q109K 0.14 tolerated(0.54) benign(0) TCGA-BH-A0C7-01 3 160000320 160000320 G A IFT80 Missense_Mutation p.L488F 0.16 deleterious(0.02) probably_damaging(0.98) TCGA-BH-A0C7-01 3 178560678 178560678 C T KCNMB2 Nonsense_Mutation p.Q221* 0.36 TCGA-BH-A0C7-01 4 156698759 156698759 C T GUCY1B3 Missense_Mutation p.R88C 0.11 deleterious(0) probably_damaging(0.969) TCGA-BH-A0C7-01 4 70707775 70707775 T C SULT1E1 Silent p.K274K 0.51 TCGA-BH-A0C7-01 4 71115206 71115206 C T CSN3 3'UTR 0.28 TCGA-BH-A0C7-01 5 1268749 1268749 C A TERT Splice_Site p.X823_splice 0.12 TCGA-BH-A0C7-01 5 170336737 170336737 G A RANBP17 Missense_Mutation p.V188I 0.13 tolerated(1) benign(0) TCGA-BH-A0C7-01 5 5223117 5223117 C A ADAMTS16 Intron 0.30 TCGA-BH-A0C7-01 6 150710610 150710610 C T IYD Missense_Mutation p.R101W 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0C7-01 6 44413549 44413549 G A CDC5L Missense_Mutation p.R750H 0.18 tolerated(0.12) benign(0) TCGA-BH-A0C7-01 6 44414520 44414520 T C CDC5L 3'UTR 0.15 TCGA-BH-A0C7-01 6 46214518 46214518 C A RCAN2 Missense_Mutation p.D180Y 0.08 deleterious(0) probably_damaging(0.913) TCGA-BH-A0C7-01 6 46826804 46826804 T C GPR116 Missense_Mutation p.S946G 0.11 deleterious(0.03) benign(0.028) TCGA-BH-A0C7-01 6 52285258 52285258 T G EFHC1 Missense_Mutation p.F17C 0.37 deleterious(0.01) benign(0.323) TCGA-BH-A0C7-01 6 74123768 74123768 A - DDX43 Frame_Shift_Del p.D525Ifs*6 0.15 TCGA-BH-A0C7-01 6 90276715 90276715 T C ANKRD6 Missense_Mutation p.V7A 0.29 tolerated(0.08) benign(0.176) TCGA-BH-A0C7-01 7 98507951 98507951 C T TRRAP Silent p.F541F 0.21 TCGA-BH-A0C7-01 7 98529083 98529083 G A TRRAP Missense_Mutation p.R1216Q 0.21 benign(0.004) TCGA-BH-A0C7-01 8 73480344 73480344 C A KCNB2 Nonsense_Mutation p.Y125* 0.10 TCGA-BH-A0C7-01 X 135112303 135112303 T C SLC9A6 Silent p.D543D 0.16 TCGA-BH-A0C7-01 X 153134145 153134145 G A L1CAM Missense_Mutation p.R473C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A0C7-01 X 23801982 23801982 G C SAT1 Missense_Mutation p.E62Q 0.07 tolerated(0.29) benign(0.002) TCGA-BH-A0C7-01 X 47307013 47307013 T C ZNF41 Missense_Mutation p.Y719C 0.34 deleterious(0) probably_damaging(0.998) TCGA-BH-A0DD-01 10 118956998 118956998 C T KCNK18 5'Flank 0.29 TCGA-BH-A0DD-01 11 319874 319874 G A IFITM3 Silent p.I122I 0.18 TCGA-BH-A0DD-01 11 66616421 66616421 C T PC Silent p.V1162V 0.08 TCGA-BH-A0DD-01 11 66616543 66616543 C G PC Missense_Mutation p.D1122H 0.07 deleterious(0) possibly_damaging(0.809) TCGA-BH-A0DD-01 11 66617100 66617100 C T PC Silent p.K1043K 0.06 TCGA-BH-A0DD-01 12 2602428 2602428 C T CACNA1C Missense_Mutation p.T330M 0.21 tolerated(0.07) possibly_damaging(0.827) TCGA-BH-A0DD-01 12 29628066 29628066 C T OVCH1 Missense_Mutation p.V510M 0.10 tolerated(0.11) possibly_damaging(0.711) TCGA-BH-A0DD-01 15 101821827 101821827 C T SNRPA1 3'UTR 0.28 TCGA-BH-A0DD-01 15 40660863 40660863 C T DISP2 Silent p.C850C 0.36 TCGA-BH-A0DD-01 16 15198506 15198506 G A RP11-1186N24.5 3'Flank 0.31 TCGA-BH-A0DD-01 16 29756224 29756224 C T C16orf54 Missense_Mutation p.A17T 0.31 tolerated_low_confidence(0.27) benign(0) TCGA-BH-A0DD-01 17 36925860 36925860 C G PIP4K2B 3'UTR 0.05 TCGA-BH-A0DD-01 17 6483031 6483031 C T KIAA0753 3'UTR 0.37 TCGA-BH-A0DD-01 17 67004302 67004302 A G ABCA9 Silent p.D1074D 0.17 TCGA-BH-A0DD-01 17 72352897 72352897 C A BTBD17 Missense_Mutation p.D446Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-BH-A0DD-01 17 72353000 72353000 C T BTBD17 Silent p.K411K 0.26 TCGA-BH-A0DD-01 17 80136988 80136988 C T CCDC57 Nonsense_Mutation p.W430* 0.07 TCGA-BH-A0DD-01 19 14581448 14581448 G A PKN1 Missense_Mutation p.R839H 0.21 deleterious(0.01) possibly_damaging(0.73) TCGA-BH-A0DD-01 19 16965008 16965008 G A SIN3B Missense_Mutation p.A332T 0.16 tolerated(0.4) benign(0.389) TCGA-BH-A0DD-01 19 50017150 50017150 T A FCGRT Missense_Mutation p.S29T 0.19 deleterious(0) benign(0.303) TCGA-BH-A0DD-01 1 153914453 153914453 C G DENND4B Missense_Mutation p.R316P 0.11 deleterious(0) possibly_damaging(0.506) TCGA-BH-A0DD-01 1 22167762 22167762 G A HSPG2 Silent p.S3115S 0.16 TCGA-BH-A0DD-01 20 34761811 34761811 G A EPB41L1 Missense_Mutation p.G38S 0.33 tolerated_low_confidence(0.89) benign(0.001) TCGA-BH-A0DD-01 20 35177631 35177631 C T MYL9 Silent p.G166G 0.18 TCGA-BH-A0DD-01 2 170403132 170403132 C T FASTKD1 Missense_Mutation p.E433K 0.26 deleterious(0.03) benign(0.063) TCGA-BH-A0DD-01 2 209106864 209106864 T C IDH1 Missense_Mutation p.Y235C 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BH-A0DD-01 2 238726375 238726375 A T RBM44 Missense_Mutation p.R272S 0.06 deleterious(0.04) possibly_damaging(0.487) TCGA-BH-A0DD-01 3 136076560 136076560 A G STAG1 Splice_Site p.X1022_splice 0.29 TCGA-BH-A0DD-01 3 49689964 49689964 C T BSN Missense_Mutation p.S992L 0.19 unknown(0) TCGA-BH-A0DD-01 5 138729303 138729303 C T PROB1 Missense_Mutation p.V490M 0.26 tolerated_low_confidence(0.08) benign(0.101) TCGA-BH-A0DD-01 5 140782907 140782907 G A PCDHGA9 Missense_Mutation p.A130T 0.29 tolerated_low_confidence(0.22) benign(0.064) TCGA-BH-A0DD-01 5 158523388 158523388 G A EBF1 Silent p.N106N 0.26 TCGA-BH-A0DD-01 5 71739899 71739899 T A ZNF366 Missense_Mutation p.Q640L 0.31 tolerated_low_confidence(0.11) benign(0.01) TCGA-BH-A0DD-01 7 102390050 102390050 G T FAM185A Silent p.V132V 0.15 TCGA-BH-A0DD-01 9 124989262 124989262 C T LHX6 Silent p.E68E 0.28 TCGA-BH-A0DD-01 9 133945108 133945108 C T LAMC3 Silent p.N980N 0.29 TCGA-BH-A0DD-01 9 19380191 19380191 C T RPS6 Translation_Start_Site p.M1? 0.30 deleterious(0.01) possibly_damaging(0.718) TCGA-BH-A0DE-01 10 104158032 104158032 C T NFKB2 Missense_Mutation p.S277F 0.26 deleterious(0) probably_damaging(0.968) TCGA-BH-A0DE-01 10 128019057 128019057 C T ADAM12 Missense_Mutation p.G37E 0.03 tolerated_low_confidence(0.24) benign(0.001) TCGA-BH-A0DE-01 11 118371701 118371701 G A KMT2A Splice_Site p.X2053_splice 0.39 TCGA-BH-A0DE-01 11 118778200 118778200 G T BCL9L Missense_Mutation p.A175D 0.40 benign(0.235) TCGA-BH-A0DE-01 11 6470327 6470327 G C TRIM3 Silent p.T722T 0.06 TCGA-BH-A0DE-01 12 115117406 115117435 TCTTACAATGTGGAACCGGGGCTGGTATTT - TBX3 In_Frame_Del p.K247_R256del 0.18 TCGA-BH-A0DE-01 12 71551620 71551620 T C TSPAN8 Intron 0.20 TCGA-BH-A0DE-01 13 45148301 45148301 G T TSC22D1 Missense_Mutation p.S637Y 0.26 deleterious(0.04) possibly_damaging(0.646) TCGA-BH-A0DE-01 15 77907723 77907723 C T LINGO1 Missense_Mutation p.D176N 0.16 deleterious(0.02) possibly_damaging(0.897) TCGA-BH-A0DE-01 16 87446722 87446722 G A ZCCHC14 Silent p.S424S 0.42 TCGA-BH-A0DE-01 16 9923469 9923469 C T GRIN2A Nonsense_Mutation p.W606* 0.29 TCGA-BH-A0DE-01 17 16665800 16665800 C T CCDC144A Silent p.Y1280Y 0.18 TCGA-BH-A0DE-01 17 57958454 57958454 G A TUBD1 Missense_Mutation p.P113L 0.21 deleterious(0) probably_damaging(0.992) TCGA-BH-A0DE-01 19 15559037 15559037 C T WIZ Missense_Mutation p.E28K 0.27 deleterious_low_confidence(0.01) benign(0.01) TCGA-BH-A0DE-01 19 19645891 19645891 G A YJEFN3 Missense_Mutation p.V123M 0.29 deleterious(0) probably_damaging(0.938) TCGA-BH-A0DE-01 19 47492898 47492898 G A ARHGAP35 Silent p.P1334P 0.23 TCGA-BH-A0DE-01 19 9801784 9801784 A G ZNF812 Missense_Mutation p.I132T 0.25 tolerated(1) benign(0.002) TCGA-BH-A0DE-01 1 159505444 159505444 C T OR10J5 Missense_Mutation p.M118I 0.28 deleterious(0.01) benign(0.378) TCGA-BH-A0DE-01 1 46713937 46713937 G C RAD54L 5'UTR 0.33 TCGA-BH-A0DE-01 1 93299205 93299211 TATCATT - RPL5 Frame_Shift_Del p.I60Vfs*8 0.20 TCGA-BH-A0DE-01 20 9417740 9417740 G T PLCB4 Missense_Mutation p.S890I 0.14 tolerated(0.05) possibly_damaging(0.595) TCGA-BH-A0DE-01 2 138425422 138425422 A G THSD7B Missense_Mutation p.Y1580C 0.17 deleterious(0) unknown(0) TCGA-BH-A0DE-01 3 150301029 150301029 G A EIF2A Missense_Mutation p.G557R 0.17 deleterious(0) probably_damaging(0.996) TCGA-BH-A0DE-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.22 deleterious(0.02) probably_damaging(0.965) TCGA-BH-A0DE-01 3 58398643 58398643 G A PXK Missense_Mutation p.S494N 0.30 deleterious(0.04) probably_damaging(0.977) TCGA-BH-A0DE-01 4 82031679 82031679 G A PRKG2 Silent p.V621V 0.04 TCGA-BH-A0DE-01 4 87968539 87968539 C T AFF1 Silent p.P284P 0.16 TCGA-BH-A0DE-01 5 140856115 140856115 T G PCDHGC3 Missense_Mutation p.I144M 0.32 tolerated(0.05) probably_damaging(0.991) TCGA-BH-A0DE-01 5 154267757 154267757 G A GEMIN5 3'UTR 0.20 TCGA-BH-A0DE-01 5 76129717 76129717 G - F2RL1 3'UTR 0.17 TCGA-BH-A0DE-01 6 168396543 168396543 T C KIF25 5'Flank 0.16 TCGA-BH-A0DE-01 7 122028669 122028669 C A CADPS2 Missense_Mutation p.M1044I 0.04 deleterious(0.02) possibly_damaging(0.677) TCGA-BH-A0DE-01 7 151878893 151878894 - A KMT2C Frame_Shift_Ins p.Q2018Sfs*7 0.24 TCGA-BH-A0DE-01 7 7529088 7529088 C T COL28A1 Missense_Mutation p.G366R 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0DE-01 7 78636505 78636505 C T MAGI2 Missense_Mutation p.D107N 0.26 deleterious(0) probably_damaging(0.992) TCGA-BH-A0DE-01 X 150349052 150349052 C T GPR50 Missense_Mutation p.R333C 0.34 deleterious(0.01) benign(0.007) TCGA-BH-A0DE-01 X 47028870 47028870 C T RBM10 Silent p.D58D 0.30 TCGA-BH-A0DG-01 10 121338235 121338235 T A TIAL1 Intron 0.19 TCGA-BH-A0DG-01 10 8115874 8115875 - G GATA3 Frame_Shift_Ins p.P409Afs*99 0.16 TCGA-BH-A0DG-01 11 1954967 1954967 G A TNNT3 Missense_Mutation p.R63H 0.19 deleterious(0) probably_damaging(0.988) TCGA-BH-A0DG-01 11 77412629 77412629 C A RSF1 Missense_Mutation p.D549Y 0.05 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-BH-A0DG-01 11 86382866 86382866 C T ME3 Missense_Mutation p.A41T 0.24 tolerated(0.53) benign(0.001) TCGA-BH-A0DG-01 12 100957349 100957349 C T NR1H4 3'Flank 0.28 TCGA-BH-A0DG-01 12 105521054 105521054 C G KIAA1033 Missense_Mutation p.Q396E 0.15 tolerated(0.22) benign(0.123) TCGA-BH-A0DG-01 12 133249314 133249314 C A POLE Missense_Mutation p.D529Y 0.20 tolerated(0.08) benign(0.114) TCGA-BH-A0DG-01 12 14689538 14689538 C T PLBD1 Missense_Mutation p.R222K 0.34 tolerated(0.37) benign(0.122) TCGA-BH-A0DG-01 12 6647342 6647342 C T GAPDH 3'UTR 0.44 TCGA-BH-A0DG-01 14 45584120 45584120 G A PRPF39 3'UTR 0.06 TCGA-BH-A0DG-01 17 3831310 3831310 G A ATP2A3 Missense_Mutation p.S1035L 0.24 deleterious_low_confidence(0.04) benign(0) TCGA-BH-A0DG-01 17 57963478 57963478 G T TUBD1 Missense_Mutation p.Q96K 0.11 tolerated(0.05) benign(0.292) TCGA-BH-A0DG-01 17 57963535 57963535 G A TUBD1 Silent p.L77L 0.11 TCGA-BH-A0DG-01 17 73664619 73664619 G A SAP30BP Missense_Mutation p.D44N 0.03 tolerated_low_confidence(0.46) benign(0.013) TCGA-BH-A0DG-01 17 73838942 73838942 G A UNC13D Silent p.V128V 0.06 TCGA-BH-A0DG-01 17 73838956 73838956 G A UNC13D Silent p.L124L 0.05 TCGA-BH-A0DG-01 17 73839577 73839577 G C UNC13D Missense_Mutation p.F47L 0.07 tolerated(1) benign(0.003) TCGA-BH-A0DG-01 17 73840404 73840404 G C UNC13D Silent p.L5L 0.07 TCGA-BH-A0DG-01 17 73840468 73840468 G A UNC13D 5'UTR 0.09 TCGA-BH-A0DG-01 18 743380 743380 C G YES1 Missense_Mutation p.V254L 0.35 deleterious(0.04) probably_damaging(0.974) TCGA-BH-A0DG-01 19 51207386 51207386 G T SHANK1 Missense_Mutation p.Q405K 0.19 possibly_damaging(0.533) TCGA-BH-A0DG-01 19 6697369 6697369 A C C3 Missense_Mutation p.S928A 0.20 tolerated(0.22) benign(0.004) TCGA-BH-A0DG-01 19 7704692 7704692 A C STXBP2 Missense_Mutation p.K82T 0.19 deleterious(0.05) benign(0.14) TCGA-BH-A0DG-01 1 152382164 152382164 G T CRNN Missense_Mutation p.S465Y 0.15 deleterious(0) benign(0.406) TCGA-BH-A0DG-01 1 153935082 153935082 A G SLC39A1 Missense_Mutation p.L37P 0.31 deleterious(0) benign(0.058) TCGA-BH-A0DG-01 1 160160636 160160636 T C CASQ1 Missense_Mutation p.V32A 0.09 tolerated(0.35) benign(0.013) TCGA-BH-A0DG-01 1 172277938 172277938 G A DNM3 Missense_Mutation p.A614T 0.35 deleterious(0.01) possibly_damaging(0.808) TCGA-BH-A0DG-01 1 204948588 204948588 T G NFASC Missense_Mutation p.S693A 0.13 tolerated(0.12) benign(0.288) TCGA-BH-A0DG-01 1 205053542 205053542 A C TMEM81 5'UTR 0.82 TCGA-BH-A0DG-01 1 222843570 222843570 G C AIDA Missense_Mutation p.F243L 0.14 tolerated(0.23) possibly_damaging(0.522) TCGA-BH-A0DG-01 1 44126037 44126037 A G KDM4A Missense_Mutation p.N128S 0.20 tolerated(0.44) benign(0.004) TCGA-BH-A0DG-01 1 6272428 6272428 C T RNF207 Silent p.I478I 0.23 TCGA-BH-A0DG-01 20 58519516 58519516 G A FAM217B Missense_Mutation p.R173Q 0.15 tolerated(0.2) benign(0.085) TCGA-BH-A0DG-01 20 6021664 6021664 T G LRRN4 3'UTR 0.23 TCGA-BH-A0DG-01 21 31655201 31655201 G A KRTAP24-1 Missense_Mutation p.T17I 0.12 tolerated(0.06) benign(0.154) TCGA-BH-A0DG-01 2 200298083 200298083 G C SATB2 Missense_Mutation p.H108Q 0.06 deleterious(0.05) possibly_damaging(0.54) TCGA-BH-A0DG-01 2 207175935 207175935 C T ZDBF2 Missense_Mutation p.S2228L 0.15 tolerated(0.66) benign(0.32) TCGA-BH-A0DG-01 2 219736425 219736425 G A WNT6 Missense_Mutation p.D174N 0.33 deleterious(0) probably_damaging(0.97) TCGA-BH-A0DG-01 5 156760407 156760407 G T CYFIP2 Missense_Mutation p.D754Y 0.23 deleterious(0) probably_damaging(0.943) TCGA-BH-A0DG-01 5 6663054 6663054 T C SRD5A1 Missense_Mutation p.S230P 0.19 tolerated(0.2) possibly_damaging(0.53) TCGA-BH-A0DG-01 6 51512917 51512917 C G PKHD1 Splice_Site p.X3771_splice 0.21 TCGA-BH-A0DG-01 7 2472271 2472271 C T CHST12 5'UTR 0.24 TCGA-BH-A0DG-01 8 10583590 10583590 G A SOX7 Silent p.P327P 0.29 TCGA-BH-A0DG-01 9 131038206 131038206 G A GOLGA2 Missense_Mutation p.T17I 0.31 deleterious(0) benign(0.329) TCGA-BH-A0DG-01 9 135765204 135765204 G C C9orf9 Intron 0.24 TCGA-BH-A0DG-01 X 55478908 55478908 C A MAGEH1 Missense_Mutation p.P34H 0.18 deleterious_low_confidence(0.03) benign(0.074) TCGA-BH-A0DG-01 X 9707633 9707633 C T GPR143 Missense_Mutation p.E338K 0.12 tolerated(0.08) possibly_damaging(0.714) TCGA-BH-A0DH-01 10 75527697 75527697 G A SEC24C Missense_Mutation p.D705N 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A0DH-01 11 3819319 3819319 C T NUP98 5'Flank 0.30 TCGA-BH-A0DH-01 11 64497587 64497587 C T RASGRP2 Missense_Mutation p.V498I 0.50 tolerated(0.83) benign(0) TCGA-BH-A0DH-01 11 763392 763394 CTC - TALDO1 In_Frame_Del p.S171del 0.49 TCGA-BH-A0DH-01 12 6939134 6939134 C T GPR162 3'Flank 0.55 TCGA-BH-A0DH-01 13 61083925 61083925 C - TDRD3 Frame_Shift_Del p.T296Rfs*21 0.40 TCGA-BH-A0DH-01 14 91792280 91792280 T A CCDC88C Nonsense_Mutation p.K391* 0.06 TCGA-BH-A0DH-01 15 22382727 22382727 C T OR4N4 Silent p.F85F 0.17 TCGA-BH-A0DH-01 15 25963326 25963326 C G ATP10A Intron 0.26 TCGA-BH-A0DH-01 15 65621396 65621396 C T IGDCC3 Missense_Mutation p.E766K 0.46 deleterious_low_confidence(0.01) benign(0.292) TCGA-BH-A0DH-01 16 23366809 23366809 C T SCNN1B Missense_Mutation p.R259W 0.32 deleterious(0) probably_damaging(0.979) TCGA-BH-A0DH-01 16 28878286 28878286 C T SH2B1 Missense_Mutation p.R291C 0.36 deleterious(0.01) benign(0.092) TCGA-BH-A0DH-01 16 67645922 67645922 C A CTCF Missense_Mutation p.H284N 0.58 deleterious(0) probably_damaging(1) TCGA-BH-A0DH-01 17 11597194 11597194 A G DNAH9 Missense_Mutation p.R1542G 0.26 possibly_damaging(0.772) TCGA-BH-A0DH-01 17 37074895 37074895 A C LASP1 Missense_Mutation p.D217A 0.32 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DH-01 17 6900318 6900318 G C ALOX12 Missense_Mutation p.E103D 0.30 tolerated(1) benign(0.002) TCGA-BH-A0DH-01 17 77758181 77758181 C T CBX2 Silent p.S313S 0.50 TCGA-BH-A0DH-01 17 77768660 77768660 C T CBX8 Missense_Mutation p.S315N 0.52 tolerated(0.45) benign(0) TCGA-BH-A0DH-01 17 80878479 80878479 G A TBCD Missense_Mutation p.G696S 0.28 tolerated(0.23) benign(0.434) TCGA-BH-A0DH-01 18 9396368 9396368 G A TWSG1 Missense_Mutation p.R105Q 0.53 deleterious(0.04) probably_damaging(0.923) TCGA-BH-A0DH-01 19 36220104 36220104 C T KMT2B Silent p.H1608H 0.19 TCGA-BH-A0DH-01 19 58774171 58774171 G A ZNF544 3'UTR 0.35 TCGA-BH-A0DH-01 19 7707366 7707366 C T STXBP2 Silent p.D282D 0.22 TCGA-BH-A0DH-01 1 152188128 152188128 G A HRNR Nonsense_Mutation p.R1993* 0.05 TCGA-BH-A0DH-01 1 167889845 167889845 C T MPC2 Missense_Mutation p.D59N 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A0DH-01 1 186072719 186072719 G A HMCN1 Missense_Mutation p.M3563I 0.34 benign(0.053) TCGA-BH-A0DH-01 1 228412196 228412196 G A OBSCN Missense_Mutation p.R989H 0.20 benign(0.005) TCGA-BH-A0DH-01 1 2522399 2522399 C T FAM213B 3'UTR 0.25 TCGA-BH-A0DH-01 1 42621219 42621219 C T GUCA2B Silent p.N97N 0.42 TCGA-BH-A0DH-01 1 46738424 46738424 T C RAD54L Missense_Mutation p.M442T 0.32 tolerated(0.58) benign(0.007) TCGA-BH-A0DH-01 20 39796490 39796490 A G PLCG1 Splice_Site p.X768_splice 0.37 TCGA-BH-A0DH-01 20 47736592 47736592 T G STAU1 Missense_Mutation p.N347T 0.25 tolerated(0.37) benign(0.142) TCGA-BH-A0DH-01 22 18065387 18065387 C T SLC25A18 Silent p.N86N 0.57 TCGA-BH-A0DH-01 22 50720382 50720382 G A PLXNB2 Silent p.L1082L 0.41 TCGA-BH-A0DH-01 2 120702704 120702704 A C PTPN4 Missense_Mutation p.K468T 0.42 tolerated(0.42) possibly_damaging(0.691) TCGA-BH-A0DH-01 2 120702705 120702705 A C PTPN4 Missense_Mutation p.K468N 0.43 tolerated(0.29) possibly_damaging(0.821) TCGA-BH-A0DH-01 2 170897490 170897490 G A UBR3 Missense_Mutation p.R1552H 0.37 tolerated(0.28) benign(0.001) TCGA-BH-A0DH-01 2 182438569 182438569 G T CERKL Missense_Mutation p.P175H 0.37 deleterious(0) probably_damaging(1) TCGA-BH-A0DH-01 2 27322929 27322929 A T KHK 3'UTR 0.35 TCGA-BH-A0DH-01 2 85804646 85804646 C T VAMP8 5'UTR 0.28 TCGA-BH-A0DH-01 3 195513168 195513168 A T MUC4 Silent p.L1761L 0.13 TCGA-BH-A0DH-01 4 126239428 126239428 C T FAT4 Missense_Mutation p.S621F 0.32 benign(0.049) TCGA-BH-A0DH-01 4 170476976 170476976 C - NEK1 Frame_Shift_Del p.G486Dfs*22 0.24 TCGA-BH-A0DH-01 4 1838164 1838164 A T LETM1 Missense_Mutation p.S244T 0.28 tolerated(0.29) possibly_damaging(0.531) TCGA-BH-A0DH-01 5 140023514 140023514 G A TMCO6 Silent p.L356L 0.39 TCGA-BH-A0DH-01 6 111697571 111697571 C T REV3L Missense_Mutation p.E663K 0.09 tolerated(0.25) benign(0.066) TCGA-BH-A0DH-01 6 161015051 161015051 G A LPA Nonsense_Mutation p.Q1190* 0.43 TCGA-BH-A0DH-01 7 100661916 100661916 G A MUC12 Silent p.%3D 0.16 TCGA-BH-A0DH-01 7 43548644 43548645 TT - HECW1 Frame_Shift_Del p.F1315* 0.28 TCGA-BH-A0DH-01 7 70252221 70252221 G T AUTS2 Missense_Mutation p.D779Y 0.38 deleterious(0) probably_damaging(0.957) TCGA-BH-A0DH-01 9 131256860 131256860 G A ODF2 Silent p.A608A 0.33 TCGA-BH-A0DH-01 9 36651752 36651752 G A MELK Missense_Mutation p.D311N 0.35 deleterious(0) possibly_damaging(0.88) TCGA-BH-A0DH-01 X 140995480 140995480 C G MAGEC1 Missense_Mutation p.Q764E 0.29 deleterious_low_confidence(0) benign(0.042) TCGA-BH-A0DH-01 X 150349192 150349192 C T GPR50 Silent p.P379P 0.34 TCGA-BH-A0DH-01 X 18660049 18660049 G A RS1 3'UTR 0.39 TCGA-BH-A0DH-01 X 46913853 46913853 G A JADE3 Missense_Mutation p.M422I 0.06 tolerated(0.09) benign(0.001) TCGA-BH-A0DI-01 10 105181309 105181309 C G PDCD11 Missense_Mutation p.L828V 0.24 tolerated(0.1) possibly_damaging(0.762) TCGA-BH-A0DI-01 10 106166473 106166473 G T CCDC147 Silent p.L726L 0.17 TCGA-BH-A0DI-01 10 81915526 81915526 T C ANXA11 3'UTR 0.27 TCGA-BH-A0DI-01 11 118967509 118967509 C G DPAGT1 3'UTR 0.33 TCGA-BH-A0DI-01 11 56113622 56113622 C G OR8K1 Silent p.L36L 0.36 TCGA-BH-A0DI-01 11 56113643 56113643 C G OR8K1 Silent p.V43V 0.38 TCGA-BH-A0DI-01 11 56114159 56114159 C T OR8K1 Silent p.F215F 0.31 TCGA-BH-A0DI-01 11 56114182 56114182 C T OR8K1 Missense_Mutation p.S223F 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-BH-A0DI-01 11 56114328 56114328 C T OR8K1 Missense_Mutation p.H272Y 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.532) TCGA-BH-A0DI-01 11 56114391 56114391 C T OR8K1 Missense_Mutation p.P293S 0.36 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-BH-A0DI-01 11 59939720 59939720 G C MS4A6A 3'Flank 0.09 TCGA-BH-A0DI-01 11 69625120 69625120 C T FGF3 Missense_Mutation p.V225I 0.93 tolerated_low_confidence(0.39) benign(0.035) TCGA-BH-A0DI-01 12 118673474 118673474 T C TAOK3 Missense_Mutation p.D147G 0.15 deleterious(0) probably_damaging(0.998) TCGA-BH-A0DI-01 12 2027693 2027693 C T CACNA2D4 5'UTR 0.17 TCGA-BH-A0DI-01 12 32791747 32791747 G A FGD4 Intron 0.16 TCGA-BH-A0DI-01 12 3702343 3702343 C T PRMT8 Missense_Mutation p.R394C 0.12 deleterious(0) probably_damaging(0.995) TCGA-BH-A0DI-01 12 41337803 41337803 C T CNTN1 Missense_Mutation p.T505M 0.13 deleterious(0) probably_damaging(0.998) TCGA-BH-A0DI-01 13 52439510 52439510 C G CCDC70 5'UTR 0.24 TCGA-BH-A0DI-01 14 69813893 69813893 G A GALNT16 Missense_Mutation p.A470T 0.20 tolerated(0.24) benign(0.003) TCGA-BH-A0DI-01 16 61687928 61687928 C T CDH8 Missense_Mutation p.E662K 0.20 deleterious(0) probably_damaging(0.992) TCGA-BH-A0DI-01 17 34863744 34863744 T C MYO19 Silent p.G417G 0.22 TCGA-BH-A0DI-01 17 41150808 41150808 T A RPL27 Missense_Mutation p.L14Q 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0DI-01 17 7577517 7577517 A T TP53 Missense_Mutation p.I255N 0.22 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DI-01 18 6983168 6983168 A T LAMA1 Missense_Mutation p.I1909N 0.04 deleterious(0) possibly_damaging(0.897) TCGA-BH-A0DI-01 19 11221353 11221353 C T LDLR Silent p.N322N 0.15 TCGA-BH-A0DI-01 19 11943938 11943938 C T ZNF440 3'UTR 0.13 TCGA-BH-A0DI-01 19 12061477 12061477 G T ZNF700 3'UTR 0.17 TCGA-BH-A0DI-01 19 20045077 20045077 C G ZNF93 Nonsense_Mutation p.S438* 0.15 TCGA-BH-A0DI-01 19 41811663 41811663 C A HNRNPUL1 Missense_Mutation p.P782H 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-BH-A0DI-01 1 109440722 109440722 G T GPSM2 Nonsense_Mutation p.E186* 0.12 TCGA-BH-A0DI-01 1 114940571 114940571 A C TRIM33 Missense_Mutation p.I1054M 0.05 tolerated(0.05) possibly_damaging(0.623) TCGA-BH-A0DI-01 1 152286956 152286956 C G FLG Missense_Mutation p.G136R 0.06 benign(0.243) TCGA-BH-A0DI-01 1 186024579 186024579 G C HMCN1 Missense_Mutation p.R2306P 0.11 possibly_damaging(0.844) TCGA-BH-A0DI-01 1 228612587 228612587 G A HIST3H3 3'UTR 0.21 TCGA-BH-A0DI-01 1 38354001 38354001 T C INPP5B Silent p.T271T 0.15 TCGA-BH-A0DI-01 1 46033629 46033629 C G AKR1A1 Intron 0.12 TCGA-BH-A0DI-01 20 45354472 45354472 G T SLC2A10 Missense_Mutation p.G266V 0.19 deleterious(0) benign(0.424) TCGA-BH-A0DI-01 20 50346438 50346438 C G ATP9A Missense_Mutation p.D50H 0.11 tolerated(0.1) benign(0.002) TCGA-BH-A0DI-01 21 10862989 10862989 G A IGHV1OR21-1 Missense_Mutation p.M95I 0.07 tolerated(0.34) benign(0.004) TCGA-BH-A0DI-01 22 31685334 31685334 C T PIK3IP1 Missense_Mutation p.G185E 0.21 deleterious(0) probably_damaging(1) TCGA-BH-A0DI-01 2 179410619 179410619 C T TTN Missense_Mutation p.V31782M 0.14 TCGA-BH-A0DI-01 2 73316488 73316488 G A RAB11FIP5 Intron 0.15 TCGA-BH-A0DI-01 3 151047297 151047297 C G P2RY13 Missense_Mutation p.R7T 0.15 tolerated_low_confidence(0.19) benign(0.03) TCGA-BH-A0DI-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.13 TCGA-BH-A0DI-01 3 180332863 180332863 G A CCDC39 Missense_Mutation p.S891L 0.03 tolerated(0.07) probably_damaging(0.978) TCGA-BH-A0DI-01 4 110882135 110882135 A G EGF Silent p.K393K 0.16 TCGA-BH-A0DI-01 4 123813371 123813371 T A FGF2 Nonsense_Mutation p.C229* 0.09 TCGA-BH-A0DI-01 4 145659178 145659178 G C HHIP 3'UTR 0.11 TCGA-BH-A0DI-01 4 56428697 56428697 C T PDCL2 Missense_Mutation p.V149M 0.15 deleterious(0.02) probably_damaging(0.947) TCGA-BH-A0DI-01 5 1414821 1414821 C A SLC6A3 Missense_Mutation p.D381Y 0.16 deleterious(0) benign(0.185) TCGA-BH-A0DI-01 5 150483207 150483207 C T ANXA6 Missense_Mutation p.R629H 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A0DI-01 5 161580218 161580218 T G GABRG2 Missense_Mutation p.S464R 0.12 tolerated(0.16) benign(0.02) TCGA-BH-A0DI-01 5 162910044 162910044 G A HMMR Silent p.Q517Q 0.22 TCGA-BH-A0DI-01 5 163337 163337 G A PLEKHG4B Silent p.T694T 0.16 TCGA-BH-A0DI-01 5 67591095 67591124 TGAACAGCATTAAACCAGACCTTATCCAGC - PIK3R1 In_Frame_Del p.N564_L573del 0.25 TCGA-BH-A0DI-01 5 68565064 68565064 G C CDK7 Missense_Mutation p.D220H 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-BH-A0DI-01 6 27783213 27783213 G C HIST1H2BM 3'UTR 0.16 TCGA-BH-A0DI-01 7 42972017 42972017 C T MRPL32 Missense_Mutation p.S11L 0.14 tolerated_low_confidence(0.82) benign(0.001) TCGA-BH-A0DI-01 7 77569914 77569914 C T PHTF2 Missense_Mutation p.H570Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-BH-A0DI-01 8 99248402 99248402 C T NIPAL2 Silent p.L139L 0.08 TCGA-BH-A0DI-01 9 101546367 101546367 G A ANKS6 Missense_Mutation p.A327V 0.19 deleterious(0) possibly_damaging(0.667) TCGA-BH-A0DI-01 9 114305275 114305275 G C ZNF483 Missense_Mutation p.G687A 0.16 deleterious(0) possibly_damaging(0.857) TCGA-BH-A0DI-01 9 133376495 133376495 G T ASS1 3'UTR 0.14 TCGA-BH-A0DI-01 X 54950989 54950989 G T TRO Splice_Site p.X447_splice 0.14 TCGA-BH-A0DK-01 10 70243321 70243321 A C SLC25A16 Nonsense_Mutation p.Y289* 0.25 TCGA-BH-A0DK-01 10 8115941 8115942 - T GATA3 Frame_Shift_Ins p.G432Wfs*76 0.25 TCGA-BH-A0DK-01 10 87898775 87898775 C T GRID1 Missense_Mutation p.R176H 0.22 tolerated(0.13) probably_damaging(0.998) TCGA-BH-A0DK-01 10 92982512 92982512 T C PCGF5 5'UTR 0.36 TCGA-BH-A0DK-01 11 58190572 58190572 T G OR5B2 Missense_Mutation p.T55P 0.29 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-BH-A0DK-01 11 5906297 5906298 TC - OR52E4 Frame_Shift_Del p.S259Ffs*20 0.29 TCGA-BH-A0DK-01 11 64575553 64575553 G A MEN1 Missense_Mutation p.S160F 0.48 tolerated(1) benign(0.009) TCGA-BH-A0DK-01 12 80199496 80199496 C A PPP1R12A Missense_Mutation p.V626F 0.08 tolerated(0.1) possibly_damaging(0.639) TCGA-BH-A0DK-01 14 31381224 31381224 A C STRN3 Silent p.V513V 0.28 TCGA-BH-A0DK-01 15 40328266 40328266 A T SRP14 3'UTR 0.23 TCGA-BH-A0DK-01 15 43037905 43037905 G C TTBK2 3'UTR 0.23 TCGA-BH-A0DK-01 15 50884259 50884259 T C TRPM7 Missense_Mutation p.I1391M 0.21 tolerated_low_confidence(0.43) benign(0.001) TCGA-BH-A0DK-01 16 31122699 31122699 T A BCKDK Missense_Mutation p.D308E 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-BH-A0DK-01 18 9255963 9255964 AG - ANKRD12 Frame_Shift_Del p.S903* 0.26 TCGA-BH-A0DK-01 19 38882594 38882594 G T SPRED3 Missense_Mutation p.L62F 0.22 deleterious(0) probably_damaging(0.998) TCGA-BH-A0DK-01 19 42482107 42482107 C T ATP1A3 Missense_Mutation p.V655I 0.23 tolerated(0.22) benign(0.002) TCGA-BH-A0DK-01 19 47181714 47181714 G C PRKD2 Missense_Mutation p.D759E 0.32 tolerated(0.14) probably_damaging(0.953) TCGA-BH-A0DK-01 19 57889346 57889346 C T ZNF547 Silent p.S334S 0.03 TCGA-BH-A0DK-01 19 9091401 9091401 T C MUC16 Silent p.G138G 0.26 TCGA-BH-A0DK-01 1 109637064 109637064 T G TMEM167B Missense_Mutation p.H56Q 0.18 tolerated(0.09) possibly_damaging(0.671) TCGA-BH-A0DK-01 1 114523891 114523891 C G OLFML3 Missense_Mutation p.L241V 0.24 tolerated(1) benign(0.041) TCGA-BH-A0DK-01 1 153635021 153635021 C A ILF2 Nonsense_Mutation p.E342* 0.17 TCGA-BH-A0DK-01 1 155014231 155014231 G T DCST1 Missense_Mutation p.D264Y 0.21 deleterious(0) possibly_damaging(0.832) TCGA-BH-A0DK-01 1 167024983 167024983 C T GPA33 Silent p.T225T 0.03 TCGA-BH-A0DK-01 1 175334374 175334374 A G TNR Missense_Mutation p.S787P 0.17 tolerated(0.38) probably_damaging(0.991) TCGA-BH-A0DK-01 1 186283758 186283758 C A TPR Intron 0.24 TCGA-BH-A0DK-01 1 202128843 202128843 G T PTPN7 Intron 0.38 TCGA-BH-A0DK-01 1 205897041 205897041 C G SLC26A9 Missense_Mutation p.D364H 0.12 deleterious(0) probably_damaging(0.964) TCGA-BH-A0DK-01 1 227076718 227076718 C T PSEN2 Missense_Mutation p.A252V 0.54 tolerated(0.15) probably_damaging(0.941) TCGA-BH-A0DK-01 1 63005436 63005436 G T DOCK7 Nonsense_Mutation p.S1027* 0.27 TCGA-BH-A0DK-01 1 89298781 89298781 C T PKN2 Missense_Mutation p.R898W 0.25 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DK-01 22 40760339 40760339 G C ADSL Missense_Mutation p.M387I 0.32 deleterious(0.02) benign(0.082) TCGA-BH-A0DK-01 2 100903408 100903408 C A LONRF2 Missense_Mutation p.G680W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DK-01 2 165550903 165550903 C A COBLL1 Missense_Mutation p.S1038I 0.24 deleterious(0) probably_damaging(0.955) TCGA-BH-A0DK-01 2 170022539 170022539 G T LRP2 Missense_Mutation p.N3887K 0.23 benign(0.04) TCGA-BH-A0DK-01 2 206617652 206617652 G A NRP2 Missense_Mutation p.R666Q 0.29 tolerated(0.59) benign(0.246) TCGA-BH-A0DK-01 2 228881884 228881884 C T SPHKAP Missense_Mutation p.R1229Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DK-01 2 80540719 80540719 A G CTNNA2 Intron 0.28 TCGA-BH-A0DK-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.40 tolerated(0.21) possibly_damaging(0.893) TCGA-BH-A0DK-01 4 153893569 153893570 AA - FHDC1 Frame_Shift_Del p.Q420Rfs*5 0.16 TCGA-BH-A0DK-01 4 71062264 71062264 A G ODAM Missense_Mutation p.K2E 0.21 deleterious(0.03) possibly_damaging(0.801) TCGA-BH-A0DK-01 5 139889608 139889608 G T ANKHD1 Missense_Mutation p.A1316S 0.26 possibly_damaging(0.694) TCGA-BH-A0DK-01 5 620293 620293 A G CEP72 Missense_Mutation p.D107G 0.20 deleterious(0.02) benign(0.276) TCGA-BH-A0DK-01 5 77423976 77423976 G A AP3B1 Missense_Mutation p.H616Y 0.25 deleterious(0) benign(0.333) TCGA-BH-A0DK-01 5 79734566 79734566 A C ZFYVE16 Missense_Mutation p.T688P 0.24 tolerated(0.12) benign(0.004) TCGA-BH-A0DK-01 6 109787472 109787472 G T ZBTB24 Missense_Mutation p.S559Y 0.30 deleterious(0.01) possibly_damaging(0.498) TCGA-BH-A0DK-01 6 30617375 30617375 G A C6orf136 Nonsense_Mutation p.W219* 0.16 TCGA-BH-A0DK-01 7 11422145 11422145 T C THSD7A Intron 0.27 TCGA-BH-A0DK-01 7 47847972 47847972 C T PKD1L1 Missense_Mutation p.G2567E 0.36 deleterious(0) probably_damaging(0.978) TCGA-BH-A0DK-01 7 50611610 50611610 G A DDC Silent p.N58N 0.28 TCGA-BH-A0DK-01 7 77256423 77256423 C G PTPN12 Missense_Mutation p.S476C 0.20 tolerated_low_confidence(0.08) benign(0.013) TCGA-BH-A0DK-01 8 106815853 106815853 C T ZFPM2 3'UTR 0.23 TCGA-BH-A0DK-01 8 125528004 125528004 G T TATDN1 Silent p.P124P 0.20 TCGA-BH-A0DK-01 8 68204307 68204307 G A ARFGEF1 Silent p.L231L 0.21 TCGA-BH-A0DK-01 8 68204310 68204310 G A ARFGEF1 Missense_Mutation p.H230Y 0.20 tolerated(0.13) benign(0.001) TCGA-BH-A0DK-01 9 35676160 35676160 C T CA9 Missense_Mutation p.P235L 0.39 deleterious(0.03) possibly_damaging(0.567) TCGA-BH-A0DK-01 X 107924151 107924151 G T COL4A5 Missense_Mutation p.G1351V 0.28 probably_damaging(0.999) TCGA-BH-A0DL-01 10 85902493 85902493 T C GHITM Missense_Mutation p.M71T 0.16 tolerated(1) benign(0.002) TCGA-BH-A0DL-01 11 1155537 1155537 G A MUC5AC Silent p.A75A 0.33 TCGA-BH-A0DL-01 11 45869245 45869245 C G CRY2 Missense_Mutation p.I89M 0.40 deleterious(0.02) benign(0.14) TCGA-BH-A0DL-01 11 55322145 55322145 C T OR4C15 Silent p.F121F 0.17 TCGA-BH-A0DL-01 12 121775176 121775176 T A ANAPC5 Missense_Mutation p.D226V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DL-01 12 133253205 133253205 G T POLE Missense_Mutation p.T279N 0.19 deleterious(0) probably_damaging(0.997) TCGA-BH-A0DL-01 12 48723296 48723296 G A H1FNT Silent p.L74L 0.07 TCGA-BH-A0DL-01 13 58208939 58208939 T A PCDH17 Silent p.G753G 0.23 TCGA-BH-A0DL-01 13 86369908 86369908 C A SLITRK6 Missense_Mutation p.V246F 0.22 deleterious(0) possibly_damaging(0.642) TCGA-BH-A0DL-01 13 99630210 99630210 C T DOCK9 5'UTR 0.24 TCGA-BH-A0DL-01 14 61435203 61435203 A G MNAT1 3'UTR 0.38 TCGA-BH-A0DL-01 14 78043232 78043232 A C SPTLC2 Missense_Mutation p.V170G 0.11 deleterious(0) possibly_damaging(0.905) TCGA-BH-A0DL-01 16 15100357 15100357 T C PDXDC1 Missense_Mutation p.F166L 0.19 deleterious(0.01) possibly_damaging(0.79) TCGA-BH-A0DL-01 16 53189880 53189880 G A CHD9 5'UTR 0.35 TCGA-BH-A0DL-01 16 74372477 74372477 C G RP11-252A24.2 RNA 0.11 TCGA-BH-A0DL-01 16 77759477 77759477 A G NUDT7 Missense_Mutation p.E62G 0.15 tolerated(0.19) benign(0.371) TCGA-BH-A0DL-01 17 7577081 7577081 T G TP53 Missense_Mutation p.E286A 0.39 deleterious(0) probably_damaging(0.988) TCGA-BH-A0DL-01 18 3253253 3253253 G A MYL12A Missense_Mutation p.S3N 0.11 deleterious(0.02) benign(0.059) TCGA-BH-A0DL-01 18 3253272 3253272 G A MYL12A Silent p.K9K 0.12 TCGA-BH-A0DL-01 18 3253901 3253901 G A MYL12A Missense_Mutation p.D66N 0.14 tolerated(0.44) benign(0.006) TCGA-BH-A0DL-01 18 3254033 3254033 G C MYL12A Missense_Mutation p.D110H 0.16 deleterious(0.02) possibly_damaging(0.666) TCGA-BH-A0DL-01 18 3255911 3255911 G A MYL12A Missense_Mutation p.D171N 0.14 tolerated(0.07) benign(0.157) TCGA-BH-A0DL-01 18 8818979 8818979 C A SOGA2 Missense_Mutation p.P960T 0.15 tolerated(0.1) benign(0.03) TCGA-BH-A0DL-01 19 14517708 14517708 G A CD97 Missense_Mutation p.V715I 0.10 tolerated(0.18) possibly_damaging(0.678) TCGA-BH-A0DL-01 19 15227121 15227121 G A ILVBL Missense_Mutation p.A438V 0.13 tolerated(0.24) benign(0.018) TCGA-BH-A0DL-01 19 2410372 2410372 G A TMPRSS9 Missense_Mutation p.G378R 0.17 deleterious(0.01) possibly_damaging(0.873) TCGA-BH-A0DL-01 19 53384563 53384563 A G ZNF320 Silent p.P272P 0.17 TCGA-BH-A0DL-01 19 55301588 55301588 C G CTB-61M7.1 RNA 0.31 TCGA-BH-A0DL-01 1 152185679 152185679 C A HRNR Missense_Mutation p.G2809V 0.10 unknown(0) TCGA-BH-A0DL-01 1 20656786 20656786 C G VWA5B1 Missense_Mutation p.H456Q 0.10 deleterious(0) probably_damaging(0.934) TCGA-BH-A0DL-01 1 42880264 42880264 C T RIMKLA Silent p.D265D 0.09 TCGA-BH-A0DL-01 1 79002407 79002407 C A PTGFR 3'UTR 0.23 TCGA-BH-A0DL-01 1 94972163 94972163 G A ABCD3 Missense_Mutation p.D604N 0.07 deleterious(0) probably_damaging(0.997) TCGA-BH-A0DL-01 20 23584110 23584110 G A CST9 3'UTR 0.24 TCGA-BH-A0DL-01 20 47855789 47855789 G A DDX27 Missense_Mutation p.R635Q 0.20 tolerated(0.08) benign(0.044) TCGA-BH-A0DL-01 20 55026995 55026995 G A CASS4 Missense_Mutation p.V255I 0.09 tolerated(0.3) benign(0.002) TCGA-BH-A0DL-01 20 60912928 60912928 C T LAMA5 Missense_Mutation p.R653H 0.41 benign(0.362) TCGA-BH-A0DL-01 22 19511619 19511619 A G CLDN5 Missense_Mutation p.C139R 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0DL-01 22 29611513 29611513 C T EMID1 Intron 0.18 TCGA-BH-A0DL-01 22 41605850 41605850 C T L3MBTL2 Missense_Mutation p.R59W 0.13 deleterious(0.01) possibly_damaging(0.877) TCGA-BH-A0DL-01 2 179463325 179463325 G T TTN Missense_Mutation p.L19007M 0.33 TCGA-BH-A0DL-01 2 242004913 242004913 C T SNED1 Missense_Mutation p.A971V 0.09 tolerated(0.23) benign(0.044) TCGA-BH-A0DL-01 2 33500981 33500981 C G LTBP1 Missense_Mutation p.R995G 0.23 deleterious(0.04) benign(0.175) TCGA-BH-A0DL-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.62 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0DL-01 3 46244889 46244889 C T CCR1 Missense_Mutation p.E306K 0.31 deleterious(0.03) benign(0.024) TCGA-BH-A0DL-01 3 50273876 50273876 C A GNAI2 Missense_Mutation p.L37M 0.39 deleterious(0) possibly_damaging(0.676) TCGA-BH-A0DL-01 4 125593120 125593120 T C ANKRD50 Missense_Mutation p.M438V 0.11 deleterious(0.02) possibly_damaging(0.625) TCGA-BH-A0DL-01 5 175511989 175511989 C A FAM153B Intron 0.11 TCGA-BH-A0DL-01 5 98235337 98235337 T C CHD1 Missense_Mutation p.K311R 0.14 tolerated(0.17) benign(0.002) TCGA-BH-A0DL-01 6 73787062 73787062 G A KCNQ5 Missense_Mutation p.A212T 0.16 deleterious(0.04) probably_damaging(0.993) TCGA-BH-A0DL-01 6 75834939 75834939 A C COL12A1 Missense_Mutation p.L2171V 0.17 probably_damaging(0.997) TCGA-BH-A0DL-01 7 107688451 107688451 C T LAMB4 Missense_Mutation p.G1410S 0.16 deleterious(0.03) benign(0.085) TCGA-BH-A0DL-01 7 84629100 84629100 A C SEMA3D Missense_Mutation p.Y664D 0.08 tolerated(0.06) benign(0.175) TCGA-BH-A0DL-01 8 121823729 121823729 C G SNTB1 Missense_Mutation p.E119Q 0.21 deleterious(0.01) possibly_damaging(0.734) TCGA-BH-A0DL-01 8 131826458 131826458 G A ADCY8 Missense_Mutation p.R924C 0.49 deleterious(0) probably_damaging(0.993) TCGA-BH-A0DL-01 8 95751694 95751694 G C DPY19L4 Missense_Mutation p.A133P 0.09 tolerated(0.09) probably_damaging(0.966) TCGA-BH-A0DL-01 9 139266463 139266463 G A CARD9 Missense_Mutation p.S23L 0.15 deleterious(0.02) probably_damaging(0.937) TCGA-BH-A0DL-01 9 4697194 4697194 C T CDC37L1 Missense_Mutation p.H203Y 0.22 tolerated(0.1) probably_damaging(0.966) TCGA-BH-A0DL-01 X 100871494 100871494 C T ARMCX6 Silent p.E39E 0.10 TCGA-BH-A0DL-01 X 103349780 103349780 C T SLC25A53 Missense_Mutation p.R54Q 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A0DL-01 X 11162155 11162155 G A ARHGAP6 Silent p.G707G 0.28 TCGA-BH-A0DL-01 X 119005892 119005892 C T NDUFA1 Silent p.L6L 0.13 TCGA-BH-A0DL-01 X 23353126 23353126 G A PTCHD1 Missense_Mutation p.R45H 0.27 tolerated(0.22) probably_damaging(0.991) TCGA-BH-A0DL-01 X 44894229 44894232 AAGT - KDM6A Splice_Site p.X207_splice 0.16 TCGA-BH-A0DL-01 X 62917109 62917109 C T ARHGEF9 Missense_Mutation p.E153K 0.26 deleterious(0.02) probably_damaging(0.919) TCGA-BH-A0DL-01 X 74296386 74296386 G A ABCB7 Missense_Mutation p.A187V 0.11 tolerated(0.56) benign(0.004) TCGA-BH-A0DO-01 11 102743804 102743804 T - MMP12 RNA 0.14 TCGA-BH-A0DO-01 11 6816047 6816047 C T OR6A2 Missense_Mutation p.R298H 0.18 deleterious(0) benign(0.028) TCGA-BH-A0DO-01 12 124221746 124221746 G A ATP6V0A2 Silent p.K322K 0.08 TCGA-BH-A0DO-01 13 84454919 84454919 C T SLITRK1 Missense_Mutation p.E242K 0.20 deleterious(0) probably_damaging(0.988) TCGA-BH-A0DO-01 14 106208558 106208558 T C IGHG1 Silent p.A114A 0.16 TCGA-BH-A0DO-01 14 28734470 28734470 G A BNIP3P1 RNA 0.12 TCGA-BH-A0DO-01 14 66028447 66028447 C T FUT8 Nonsense_Mutation p.Q56* 0.11 TCGA-BH-A0DO-01 15 78305288 78305288 C G TBC1D2B Missense_Mutation p.R716P 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A0DO-01 16 1793389 1793389 G C MAPK8IP3 Missense_Mutation p.R219P 0.09 tolerated(0.33) probably_damaging(0.94) TCGA-BH-A0DO-01 17 8706547 8706547 T A PIK3R6 3'UTR 0.23 TCGA-BH-A0DO-01 19 37441513 37441513 G A ZNF568 Missense_Mutation p.M486I 0.14 tolerated(0.48) benign(0.297) TCGA-BH-A0DO-01 19 38380122 38380122 G A WDR87 Silent p.L1358L 0.15 TCGA-BH-A0DO-01 19 52033695 52033695 G A SIGLEC6 Silent p.S250S 0.15 TCGA-BH-A0DO-01 1 152079924 152079924 G A TCHH Silent p.V1923V 0.16 TCGA-BH-A0DO-01 1 15892735 15892735 C G DNAJC16 Intron 0.21 TCGA-BH-A0DO-01 1 16263956 16263956 A T SPEN Missense_Mutation p.D3442V 0.06 probably_damaging(0.936) TCGA-BH-A0DO-01 1 171077313 171077313 G T FMO3 Missense_Mutation p.G193V 0.15 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DO-01 1 70728319 70728319 A T ANKRD13C 3'UTR 0.11 TCGA-BH-A0DO-01 21 42823096 42823096 A G MX1 Missense_Mutation p.M479V 0.18 tolerated(0.1) benign(0.091) TCGA-BH-A0DO-01 2 152988657 152988657 C T STAM2 Missense_Mutation p.M332I 0.18 tolerated(0.05) benign(0.003) TCGA-BH-A0DO-01 2 242051776 242051776 C T PASK Missense_Mutation p.E1145K 0.21 deleterious(0) possibly_damaging(0.748) TCGA-BH-A0DO-01 3 101578250 101578251 - TG NFKBIZ 3'UTR 0.12 TCGA-BH-A0DO-01 3 108836879 108836879 G A MORC1 Missense_Mutation p.R10W 0.19 deleterious(0) probably_damaging(0.994) TCGA-BH-A0DO-01 3 172166129 172166129 G T GHSR Silent p.P25P 0.12 TCGA-BH-A0DO-01 3 178952074 178952074 G A PIK3CA Missense_Mutation p.M1043I 0.18 tolerated(0.11) benign(0.054) TCGA-BH-A0DO-01 3 53779689 53779689 C T CACNA1D Silent p.I1035I 0.20 TCGA-BH-A0DO-01 4 6698746 6698746 T - S100P Frame_Shift_Del p.F89Lfs*43 0.21 TCGA-BH-A0DO-01 6 143074830 143074830 G - HIVEP2 Frame_Shift_Del p.T2252Nfs*54 0.21 TCGA-BH-A0DO-01 6 167570482 167570482 C A GPR31 Missense_Mutation p.V280L 0.08 tolerated(0.49) benign(0.173) TCGA-BH-A0DO-01 6 97578791 97578791 C T KLHL32 Silent p.D524D 0.08 TCGA-BH-A0DO-01 8 22548686 22548693 GAGTAGAG - EGR3 Frame_Shift_Del p.L153Rfs*38 0.23 TCGA-BH-A0DO-01 8 4494943 4494943 G A CSMD1 Missense_Mutation p.H75Y 0.21 benign(0.437) TCGA-BH-A0DO-01 9 135153491 135153491 T G SETX Missense_Mutation p.N2270H 0.22 deleterious(0.05) benign(0.213) TCGA-BH-A0DO-01 9 140648622 140648622 G C EHMT1 Splice_Site p.X417_splice 0.07 TCGA-BH-A0DO-01 X 23411483 23411483 C T PTCHD1 Silent p.S616S 0.14 TCGA-BH-A0DP-01 10 129909974 129909974 C A MKI67 Missense_Mutation p.R732L 0.04 deleterious(0) possibly_damaging(0.512) TCGA-BH-A0DP-01 11 4409560 4409560 C T TRIM21 Silent p.R235R 0.10 TCGA-BH-A0DP-01 11 47814420 47814420 T C NUP160 Missense_Mutation p.N1123S 0.19 tolerated(0.1) benign(0.015) TCGA-BH-A0DP-01 11 62554100 62554100 C T TAF6L Missense_Mutation p.L401F 0.31 tolerated(0.1) benign(0.36) TCGA-BH-A0DP-01 11 65266821 65266822 AA - MALAT1 RNA 0.33 TCGA-BH-A0DP-01 13 36700119 36700119 G A DCLK1 Silent p.S52S 0.12 TCGA-BH-A0DP-01 15 31197787 31197788 TG - FAN1 Frame_Shift_Del p.V308Cfs*5 0.29 TCGA-BH-A0DP-01 16 69776213 69776240 TTTGCCTGCGGGAACTCGCTCTTCACCT - NOB1 Missense_Mutation 0.34 TCGA-BH-A0DP-01 16 84497267 84497267 G A ATP2C2 Missense_Mutation p.E924K 0.45 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DP-01 17 12011144 12011144 C T MAP2K4 Missense_Mutation p.S184L 0.48 deleterious(0) probably_damaging(1) TCGA-BH-A0DP-01 18 47777321 47777321 T C CCDC11 Missense_Mutation p.H268R 0.25 tolerated(0.06) benign(0.006) TCGA-BH-A0DP-01 1 67207078 67207078 C A SGIP1 Missense_Mutation p.A808E 0.09 deleterious(0.02) benign(0.138) TCGA-BH-A0DP-01 20 25459629 25459629 G C NINL Missense_Mutation p.L711V 0.44 deleterious(0.02) benign(0.184) TCGA-BH-A0DP-01 2 10559956 10559956 C T HPCAL1 Missense_Mutation p.H25Y 0.35 deleterious(0) benign(0.001) TCGA-BH-A0DP-01 2 44115599 44115599 C T LRPPRC 3'UTR 0.28 TCGA-BH-A0DP-01 3 130452677 130452677 G C PIK3R4 Missense_Mutation p.L389V 0.16 deleterious(0) probably_damaging(0.963) TCGA-BH-A0DP-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.19 deleterious(0.04) probably_damaging(0.96) TCGA-BH-A0DP-01 4 17517100 17517100 G A CLRN2 Missense_Mutation p.V71M 0.29 tolerated(0.11) probably_damaging(0.999) TCGA-BH-A0DP-01 5 140590267 140590267 G A PCDHB12 Silent p.S596S 0.20 TCGA-BH-A0DP-01 5 453697 453697 A G EXOC3 Missense_Mutation p.M193V 0.46 tolerated(0.24) benign(0) TCGA-BH-A0DP-01 6 89600290 89600290 C T RNGTT Missense_Mutation p.V274I 0.11 deleterious(0.05) possibly_damaging(0.56) TCGA-BH-A0DP-01 7 150439381 150439381 G T GIMAP5 Missense_Mutation p.V52L 0.06 tolerated(0.1) benign(0.06) TCGA-BH-A0DQ-01 10 114168281 114168281 T C ACSL5 Splice_Site p.X234_splice 0.27 TCGA-BH-A0DQ-01 10 70138295 70138295 A C RUFY2 Intron 0.29 TCGA-BH-A0DQ-01 10 75560085 75560085 A - ZSWIM8 Frame_Shift_Del p.A1628Pfs*10 0.25 TCGA-BH-A0DQ-01 11 121030932 121030933 - C TECTA Frame_Shift_Ins p.D1595Rfs*13 0.31 TCGA-BH-A0DQ-01 11 9853808 9853808 G A SBF2 Silent p.V1205V 0.30 TCGA-BH-A0DQ-01 12 113737727 113737727 C T SLC8B1 Missense_Mutation p.S537N 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A0DQ-01 12 124144342 124144342 T A GTF2H3 Missense_Mutation p.W229R 0.42 deleterious(0) probably_damaging(0.944) TCGA-BH-A0DQ-01 13 32709122 32709122 C A FRY Missense_Mutation p.P323T 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0DQ-01 14 45687625 45687625 C A MIS18BP1 Missense_Mutation p.G901V 0.25 deleterious(0) probably_damaging(0.998) TCGA-BH-A0DQ-01 15 90784678 90784678 C T GDPGP1 Missense_Mutation p.R180C 0.21 tolerated(0.08) benign(0.017) TCGA-BH-A0DQ-01 16 69965057 69965057 C T WWP2 Missense_Mutation p.T483M 0.34 tolerated(0.14) benign(0.183) TCGA-BH-A0DQ-01 17 43045000 43045000 G A C1QL1 Silent p.P139P 0.32 TCGA-BH-A0DQ-01 17 4496467 4496467 G T SMTNL2 Splice_Site p.X244_splice 0.36 TCGA-BH-A0DQ-01 17 4796018 4796018 G A MINK1 Missense_Mutation p.G756R 0.19 tolerated(0.24) benign(0.289) TCGA-BH-A0DQ-01 18 7040119 7040119 C T LAMA1 Missense_Mutation p.G460S 0.21 deleterious(0) probably_damaging(0.995) TCGA-BH-A0DQ-01 19 50831788 50831788 G T KCNC3 Nonsense_Mutation p.C184* 0.50 TCGA-BH-A0DQ-01 19 57802202 57802202 G A ZNF460 Missense_Mutation p.G98E 0.29 tolerated(0.47) benign(0.066) TCGA-BH-A0DQ-01 19 7974955 7974956 - TT MAP2K7 Frame_Shift_Ins p.D93Lfs*9 0.31 TCGA-BH-A0DQ-01 1 144952031 144952031 G T PDE4DIP Intron 0.13 TCGA-BH-A0DQ-01 1 214504346 214504346 C T SMYD2 Silent p.A290A 0.10 TCGA-BH-A0DQ-01 1 32127285 32127285 G A COL16A1 Silent p.G1234G 0.27 TCGA-BH-A0DQ-01 2 197709249 197709249 A G PGAP1 Missense_Mutation p.V779A 0.48 tolerated(0.75) benign(0.001) TCGA-BH-A0DQ-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.38 deleterious(0) probably_damaging(0.96) TCGA-BH-A0DQ-01 2 206610543 206610543 G A NRP2 Missense_Mutation p.R572Q 0.41 deleterious(0.01) benign(0.39) TCGA-BH-A0DQ-01 2 3691410 3691410 G A COLEC11 Missense_Mutation p.R187H 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A0DQ-01 2 99634761 99634761 A T TSGA10 Nonsense_Mutation p.Y658* 0.33 TCGA-BH-A0DQ-01 3 196751207 196751207 G A MFI2 Missense_Mutation p.R152C 0.50 tolerated(0.15) possibly_damaging(0.849) TCGA-BH-A0DQ-01 4 143067052 143067052 C T INPP4B Missense_Mutation p.G554D 0.11 tolerated(0.6) benign(0.014) TCGA-BH-A0DQ-01 5 77385315 77385315 C A AP3B1 Missense_Mutation p.V827L 0.40 tolerated(0.23) benign(0.097) TCGA-BH-A0DQ-01 6 138413301 138413301 C T PERP Missense_Mutation p.G154S 0.64 deleterious(0.01) possibly_damaging(0.506) TCGA-BH-A0DQ-01 6 4892446 4892446 A G CDYL Missense_Mutation p.D175G 0.42 tolerated(0.5) possibly_damaging(0.894) TCGA-BH-A0DQ-01 7 30491714 30491714 C T NOD1 Missense_Mutation p.S440N 0.33 tolerated(0.22) probably_damaging(0.993) TCGA-BH-A0DQ-01 8 113564901 113564901 G C CSMD3 Missense_Mutation p.S1428C 0.35 deleterious(0) probably_damaging(1) TCGA-BH-A0DQ-01 X 123779127 123779127 C A TENM1 Missense_Mutation p.R581L 0.05 tolerated(0.32) benign(0.153) TCGA-BH-A0DQ-01 X 127186074 127186074 C T ACTRT1 Missense_Mutation p.V38I 0.53 tolerated(1) benign(0.002) TCGA-BH-A0DQ-01 X 134156265 134156265 G A FAM127C Silent p.P75P 0.22 TCGA-BH-A0DQ-01 X 54335680 54335680 C T WNK3 Missense_Mutation p.G260E 0.26 deleterious(0) probably_damaging(1) TCGA-BH-A0DQ-01 X 65244946 65244946 G A VSIG4 Silent p.I287I 0.28 TCGA-BH-A0DT-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.26 TCGA-BH-A0DT-01 12 2800326 2800326 G A CACNA1C Silent p.E2174E 0.14 TCGA-BH-A0DT-01 12 48091472 48091472 C A RPAP3 Missense_Mutation p.D109Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-BH-A0DT-01 16 67063313 67063313 G A CBFB Translation_Start_Site p.M1? 0.38 tolerated(0.1) possibly_damaging(0.853) TCGA-BH-A0DT-01 17 4848490 4848490 C T RNF167 3'UTR 0.26 TCGA-BH-A0DT-01 1 21048381 21048381 G A SH2D5 Silent p.Y392Y 0.11 TCGA-BH-A0DT-01 2 10729809 10729809 A T NOL10 Missense_Mutation p.D497E 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-BH-A0DT-01 2 175436607 175436607 G A WIPF1 Missense_Mutation p.P309L 0.08 tolerated(0.27) probably_damaging(0.988) TCGA-BH-A0DT-01 2 42909567 42909567 A C MTA3 Missense_Mutation p.R243S 0.25 tolerated(0.23) benign(0.138) TCGA-BH-A0DT-01 2 84784910 84784910 C T DNAH6 Missense_Mutation p.P552S 0.25 tolerated(0.62) benign(0.006) TCGA-BH-A0DT-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.28 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A0DT-01 4 77932958 77932958 C T SEPT11 Missense_Mutation p.R137C 0.08 deleterious(0.01) probably_damaging(1) TCGA-BH-A0DT-01 4 96045009 96045012 CTGT - BMPR1B Frame_Shift_Del p.C165Vfs*28 0.47 TCGA-BH-A0DT-01 5 37314414 37314414 T G NUP155 Missense_Mutation p.E774D 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0DT-01 5 56160697 56160700 CTAA - MAP3K1 Frame_Shift_Del p.N325Lfs*3 0.20 TCGA-BH-A0DT-01 5 56161690 56161691 - T MAP3K1 Frame_Shift_Ins p.S397* 0.25 TCGA-BH-A0DT-01 5 63510190 63510190 C T RNF180 Missense_Mutation p.S346L 0.23 tolerated(0.27) benign(0.097) TCGA-BH-A0DT-01 6 44144336 44144336 G C CAPN11 Missense_Mutation p.E340D 0.07 tolerated(0.64) benign(0.019) TCGA-BH-A0DT-01 8 52252221 52252221 G A PXDNL Missense_Mutation p.A1370V 0.21 tolerated(0.32) benign(0.002) TCGA-BH-A0DV-01 11 64329570 64329570 G T SLC22A11 Missense_Mutation p.G198C 0.12 tolerated(0.07) benign(0.193) TCGA-BH-A0DV-01 16 28604867 28604867 G C SULT1A2 Missense_Mutation p.A132G 0.08 deleterious(0.03) benign(0.081) TCGA-BH-A0DV-01 17 39845177 39845177 C T EIF1 5'UTR 0.25 TCGA-BH-A0DV-01 17 48557115 48557115 G A RSAD1 Silent p.G87G 0.18 TCGA-BH-A0DV-01 19 51165616 51165616 C A SHANK1 Missense_Mutation p.G2031V 0.16 unknown(0) TCGA-BH-A0DV-01 1 205274440 205274440 C A NUAK2 Missense_Mutation p.G237V 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A0DV-01 1 24201013 24201013 G A CNR2 3'UTR 0.07 TCGA-BH-A0DV-01 1 41976243 41976243 G A HIVEP3 Missense_Mutation p.A2367V 0.15 benign(0.115) TCGA-BH-A0DV-01 21 36252994 36252995 - C RUNX1 Frame_Shift_Ins p.D123Gfs*15 0.09 TCGA-BH-A0DV-01 22 31723152 31723152 T C PATZ1 Missense_Mutation p.M597V 0.03 tolerated(0.17) benign(0.001) TCGA-BH-A0DV-01 2 182780954 182780954 A G SSFA2 Missense_Mutation p.R863G 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0DV-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A0DV-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.13 tolerated(0.36) benign(0.4) TCGA-BH-A0DV-01 3 178938935 178938935 A G PIK3CA Missense_Mutation p.E726G 0.12 tolerated(0.07) benign(0.4) TCGA-BH-A0DV-01 5 56155725 56155726 AG - MAP3K1 Frame_Shift_Del p.R273Sfs*27 0.13 TCGA-BH-A0DV-01 5 56189434 56189434 T C MAP3K1 Missense_Mutation p.L1489S 0.17 deleterious(0) probably_damaging(0.997) TCGA-BH-A0DV-01 5 56189441 56189441 T G MAP3K1 Silent p.L1491L 0.16 TCGA-BH-A0DV-01 7 151859200 151859200 A - KMT2C Splice_Site p.X3820_splice 0.10 TCGA-BH-A0DV-01 X 16657357 16657357 T - CTPS2 Frame_Shift_Del p.M436Cfs*13 0.08 TCGA-BH-A0DX-01 11 106680934 106680934 G A GUCY1A2 Missense_Mutation p.L493F 0.19 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DX-01 11 118772067 118772067 C T BCL9L Silent p.L795L 0.20 TCGA-BH-A0DX-01 11 124856675 124856675 C T CCDC15 Missense_Mutation p.S264L 0.14 tolerated(0.33) benign(0.031) TCGA-BH-A0DX-01 11 22272388 22272388 C T ANO5 Missense_Mutation p.S372L 0.21 deleterious(0) benign(0.301) TCGA-BH-A0DX-01 11 44228348 44228348 C T EXT2 Missense_Mutation p.L534F 0.15 tolerated(0.19) benign(0.007) TCGA-BH-A0DX-01 11 56380151 56380151 G T OR5M1 Silent p.V276V 0.19 TCGA-BH-A0DX-01 13 29933532 29933532 C T MTUS2 Silent p.G1023G 0.19 TCGA-BH-A0DX-01 13 31549065 31549065 G A TEX26 3'UTR 0.13 TCGA-BH-A0DX-01 13 52667302 52667302 C A NEK5 Missense_Mutation p.D366Y 0.18 deleterious(0) probably_damaging(0.99) TCGA-BH-A0DX-01 13 73348184 73348184 A G DIS3 Missense_Mutation p.V334A 0.22 tolerated(0.82) benign(0.001) TCGA-BH-A0DX-01 14 105843115 105843115 C T PACS2 Missense_Mutation p.S271L 0.41 tolerated(0.82) probably_damaging(0.997) TCGA-BH-A0DX-01 14 20757805 20757805 G A TTC5 Missense_Mutation p.S435L 0.17 tolerated(0.23) benign(0.085) TCGA-BH-A0DX-01 14 23559213 23559213 C T ACIN1 Silent p.L196L 0.33 TCGA-BH-A0DX-01 14 23858207 23858207 G A MYH6 Missense_Mutation p.R1346W 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A0DX-01 14 36781172 36781172 G A MBIP Silent p.H210H 0.21 TCGA-BH-A0DX-01 14 50065856 50065856 C T LRR1 Nonsense_Mutation p.Q40* 0.18 TCGA-BH-A0DX-01 15 34032055 34032055 G C RYR3 Missense_Mutation p.R2560P 0.23 possibly_damaging(0.447) TCGA-BH-A0DX-01 15 94841656 94841656 T A MCTP2 Missense_Mutation p.D54E 0.20 deleterious(0) possibly_damaging(0.593) TCGA-BH-A0DX-01 16 4923065 4923065 C T UBN1 Silent p.I597I 0.15 TCGA-BH-A0DX-01 16 50345963 50345963 G A ADCY7 Missense_Mutation p.R822H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0DX-01 16 57060870 57060870 G A NLRC5 Missense_Mutation p.C672Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DX-01 18 29470718 29470718 G A TRAPPC8 Nonsense_Mutation p.R570* 0.17 TCGA-BH-A0DX-01 19 39734315 39734315 G A IFNL3 Missense_Mutation p.T183M 0.19 deleterious(0.02) possibly_damaging(0.602) TCGA-BH-A0DX-01 19 45574072 45574072 C T CLASRP Missense_Mutation p.S665F 0.14 deleterious_low_confidence(0) unknown(0) TCGA-BH-A0DX-01 19 55505775 55505775 G C NLRP2 Missense_Mutation p.L949F 0.16 deleterious(0) probably_damaging(0.973) TCGA-BH-A0DX-01 19 55743172 55743172 G A PPP6R1 Silent p.L768L 0.24 TCGA-BH-A0DX-01 19 5787632 5787632 C A DUS3L Missense_Mutation p.V394F 0.23 deleterious(0) possibly_damaging(0.565) TCGA-BH-A0DX-01 19 58102661 58102661 C A ZIK1 3'UTR 0.11 TCGA-BH-A0DX-01 1 155228722 155228722 G C SCAMP3 Missense_Mutation p.L138V 0.20 deleterious(0) probably_damaging(0.973) TCGA-BH-A0DX-01 1 158058164 158058164 G A KIRREL Missense_Mutation p.G322S 0.16 deleterious(0.01) possibly_damaging(0.792) TCGA-BH-A0DX-01 1 17273343 17273343 G C CROCC Missense_Mutation p.E791Q 0.12 possibly_damaging(0.612) TCGA-BH-A0DX-01 1 205689755 205689755 G A NUCKS1 Missense_Mutation p.H86Y 0.30 tolerated(0.46) possibly_damaging(0.607) TCGA-BH-A0DX-01 1 26784375 26784375 G A DHDDS Silent p.L212L 0.21 TCGA-BH-A0DX-01 1 36933504 36933504 G C CSF3R Missense_Mutation p.L595V 0.16 deleterious(0.04) benign(0.036) TCGA-BH-A0DX-01 1 62907207 62907207 G C USP1 Missense_Mutation p.K73N 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0DX-01 1 85560164 85560164 C A WDR63 Missense_Mutation p.H367N 0.25 tolerated(1) benign(0.001) TCGA-BH-A0DX-01 20 1961312 1961312 G T PDYN Missense_Mutation p.A141E 0.15 tolerated(1) benign(0.007) TCGA-BH-A0DX-01 21 46319038 46319038 C A ITGB2 Nonsense_Mutation p.E313* 0.21 TCGA-BH-A0DX-01 22 29627020 29627020 G A EMID1 Silent p.L159L 0.10 TCGA-BH-A0DX-01 2 102988423 102988423 C G IL18R1 Missense_Mutation p.Q105E 0.27 tolerated(0.08) benign(0.079) TCGA-BH-A0DX-01 2 162890159 162890159 C G DPP4 Missense_Mutation p.G260A 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-BH-A0DX-01 2 17836590 17836590 G C VSNL1 Missense_Mutation p.D169H 0.17 deleterious(0) possibly_damaging(0.51) TCGA-BH-A0DX-01 2 17836660 17836660 G A VSNL1 Silent p.%3D 0.16 TCGA-BH-A0DX-01 2 179471955 179471955 C T TTN Missense_Mutation p.G17792R 0.20 TCGA-BH-A0DX-01 2 179615735 179615735 C G TTN Intron 0.17 TCGA-BH-A0DX-01 2 204116801 204116801 C T CYP20A1 Missense_Mutation p.S134F 0.18 deleterious(0.01) benign(0.155) TCGA-BH-A0DX-01 2 46574149 46574149 C T EPAS1 Missense_Mutation p.S55F 0.17 deleterious(0) probably_damaging(0.921) TCGA-BH-A0DX-01 2 51254720 51254720 C T NRXN1 Missense_Mutation p.G231E 0.36 deleterious(0.01) probably_damaging(0.966) TCGA-BH-A0DX-01 2 71221852 71221852 G A TEX261 Silent p.L12L 0.21 TCGA-BH-A0DX-01 3 127816231 127816231 C T RUVBL1 Missense_Mutation p.E310K 0.15 deleterious(0) probably_damaging(0.967) TCGA-BH-A0DX-01 3 133335748 133335748 G A TOPBP1 Missense_Mutation p.H1261Y 0.17 tolerated(0.36) benign(0.251) TCGA-BH-A0DX-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A0DX-01 3 185198193 185198193 C T MAP3K13 Missense_Mutation p.T892M 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BH-A0DX-01 3 38962717 38962717 G A SCN11A Missense_Mutation p.R248C 0.15 deleterious(0) probably_damaging(0.91) TCGA-BH-A0DX-01 3 40573701 40573701 G A ZNF621 Missense_Mutation p.G147E 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A0DX-01 3 44489889 44489889 G A ZNF445 Missense_Mutation p.S425L 0.12 deleterious(0.02) benign(0.307) TCGA-BH-A0DX-01 3 44893829 44893829 G A KIF15 Missense_Mutation p.E1368K 0.16 deleterious(0.01) benign(0.156) TCGA-BH-A0DX-01 3 52396484 52396484 C T DNAH1 Silent p.Y1687Y 0.26 TCGA-BH-A0DX-01 4 141598222 141598222 G T TBC1D9 Nonsense_Mutation p.Y295* 0.20 TCGA-BH-A0DX-01 4 177116810 177116810 G A SPATA4 5'UTR 0.38 TCGA-BH-A0DX-01 4 187519128 187519128 C G FAT1 Missense_Mutation p.Q4085H 0.15 benign(0.066) TCGA-BH-A0DX-01 5 140236913 140236913 G A PCDHA10 Missense_Mutation p.R427Q 0.36 tolerated_low_confidence(0.14) benign(0.168) TCGA-BH-A0DX-01 5 75427568 75427568 G C SV2C 5'UTR 0.06 TCGA-BH-A0DX-01 6 100369086 100369086 C G MCHR2 Missense_Mutation p.K251N 0.03 deleterious(0.01) possibly_damaging(0.701) TCGA-BH-A0DX-01 6 161969999 161969999 C A PARK2 Missense_Mutation p.V324F 0.26 deleterious(0) possibly_damaging(0.621) TCGA-BH-A0DX-01 6 169626349 169626349 C T THBS2 Missense_Mutation p.D822N 0.30 tolerated(0.11) possibly_damaging(0.789) TCGA-BH-A0DX-01 6 35423588 35423588 G A FANCE Missense_Mutation p.V105I 0.11 deleterious(0.02) benign(0.046) TCGA-BH-A0DX-01 7 154237710 154237710 T A DPP6 Missense_Mutation p.I184N 0.27 deleterious(0) benign(0.362) TCGA-BH-A0DX-01 8 26623598 26623598 C A ADRA1A Intron 0.16 TCGA-BH-A0DX-01 9 104499768 104499768 G A GRIN3A Missense_Mutation p.P165L 0.12 tolerated(0.23) possibly_damaging(0.907) TCGA-BH-A0DX-01 9 134351790 134351790 G A PRRC2B Missense_Mutation p.R1425K 0.15 deleterious(0) probably_damaging(0.989) TCGA-BH-A0DX-01 9 135537878 135537878 T G DDX31 Missense_Mutation p.I199L 0.15 tolerated(0.12) benign(0.002) TCGA-BH-A0DX-01 9 91159324 91159324 C G NXNL2 Silent p.A111A 0.18 TCGA-BH-A0DX-01 X 10085400 10085400 C T WWC3 Missense_Mutation p.S434L 0.10 tolerated(0.75) benign(0.005) TCGA-BH-A0DX-01 X 148037760 148037760 C A AFF2 Missense_Mutation p.Q729K 0.30 tolerated(0.46) benign(0.122) TCGA-BH-A0DX-01 X 48830469 48830469 A T GRIPAP1 3'UTR 0.17 TCGA-BH-A0DX-01 X 57146372 57146372 G C SPIN2B Missense_Mutation p.Q231E 0.16 deleterious(0.02) possibly_damaging(0.498) TCGA-BH-A0DZ-01 10 118138002 118138002 G A CCDC172 Missense_Mutation p.E241K 0.24 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DZ-01 10 128807054 128807054 C T DOCK1 Silent p.F348F 0.07 TCGA-BH-A0DZ-01 10 52003088 52003088 C T ASAH2 Silent p.Q128Q 0.28 TCGA-BH-A0DZ-01 10 71393085 71393085 G A C10orf35 3'UTR 0.40 TCGA-BH-A0DZ-01 10 74874153 74874153 G C NUDT13 Missense_Mutation p.R10S 0.28 deleterious_low_confidence(0.01) benign(0.069) TCGA-BH-A0DZ-01 10 75532727 75532727 C G FUT11 Silent p.L212L 0.32 TCGA-BH-A0DZ-01 10 91066299 91066299 G A IFIT2 Missense_Mutation p.D196N 0.31 tolerated(0.26) benign(0.02) TCGA-BH-A0DZ-01 10 94366119 94366119 G A KIF11 Missense_Mutation p.D59N 0.31 deleterious(0) benign(0.413) TCGA-BH-A0DZ-01 11 124180243 124180243 G C OR8D1 Silent p.V140V 0.34 TCGA-BH-A0DZ-01 11 32452080 32452080 C T WT1 Intron 0.11 TCGA-BH-A0DZ-01 11 32452082 32452082 C A WT1 Intron 0.11 TCGA-BH-A0DZ-01 11 47260502 47260502 C G DDB2 3'UTR 0.35 TCGA-BH-A0DZ-01 11 6048366 6048366 G C OR56A1 Missense_Mutation p.S190C 0.44 tolerated(0.05) benign(0.037) TCGA-BH-A0DZ-01 11 61583860 61583860 C T FADS1 Intron 0.56 TCGA-BH-A0DZ-01 11 67431978 67431978 G C ALDH3B2 Missense_Mutation p.I254M 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-BH-A0DZ-01 11 71712941 71712941 G T IL18BP 3'UTR 0.35 TCGA-BH-A0DZ-01 12 11183547 11183547 G A TAS2R31 Silent p.L130L 0.10 TCGA-BH-A0DZ-01 12 112669495 112669495 C T HECTD4 Missense_Mutation p.E1862K 0.20 possibly_damaging(0.777) TCGA-BH-A0DZ-01 12 113515419 113515419 C T DTX1 Silent p.L150L 0.40 TCGA-BH-A0DZ-01 12 13529169 13529169 C G C12orf36 Missense_Mutation p.Q57H 0.42 benign(0.387) TCGA-BH-A0DZ-01 12 1863507 1863507 C G ADIPOR2 5'UTR 0.29 TCGA-BH-A0DZ-01 12 7294698 7294698 G C CLSTN3 Missense_Mutation p.E501D 0.28 tolerated(0.11) benign(0.05) TCGA-BH-A0DZ-01 12 78598796 78598796 C T NAV3 Nonsense_Mutation p.Q2284* 0.30 TCGA-BH-A0DZ-01 12 8674128 8674128 G T CLEC4D 3'UTR 0.27 TCGA-BH-A0DZ-01 13 101910796 101910796 C T NALCN Missense_Mutation p.E422K 0.37 deleterious(0.02) probably_damaging(0.98) TCGA-BH-A0DZ-01 13 33252979 33252979 G A PDS5B Missense_Mutation p.D324N 0.31 deleterious(0.01) probably_damaging(1) TCGA-BH-A0DZ-01 13 50025866 50025866 C G SETDB2 5'UTR 0.33 TCGA-BH-A0DZ-01 14 21499252 21499252 G A TPPP2 Silent p.K85K 0.27 TCGA-BH-A0DZ-01 14 21896355 21896355 C A CHD8 Missense_Mutation p.S425I 0.09 deleterious_low_confidence(0) benign(0.055) TCGA-BH-A0DZ-01 14 23512055 23512055 C T PSMB11 Silent p.C207C 0.32 TCGA-BH-A0DZ-01 14 24617199 24617199 C T RNF31 Silent p.L69L 0.32 TCGA-BH-A0DZ-01 14 24617253 24617253 C T RNF31 Silent p.L87L 0.23 TCGA-BH-A0DZ-01 14 24617260 24617260 C T RNF31 Nonsense_Mutation p.Q90* 0.12 TCGA-BH-A0DZ-01 14 72176230 72176230 G C SIPA1L1 Missense_Mutation p.D1374H 0.33 tolerated(0.05) possibly_damaging(0.887) TCGA-BH-A0DZ-01 14 75515335 75515335 C T MLH3 Missense_Mutation p.E342K 0.31 deleterious(0.01) possibly_damaging(0.754) TCGA-BH-A0DZ-01 14 92471025 92471025 C T TRIP11 Missense_Mutation p.E1099K 0.24 deleterious(0) possibly_damaging(0.477) TCGA-BH-A0DZ-01 15 56686871 56686871 C T TEX9 Nonsense_Mutation p.Q223* 0.10 TCGA-BH-A0DZ-01 15 73024024 73024024 C T BBS4 Silent p.I331I 0.28 TCGA-BH-A0DZ-01 15 85326354 85326354 G T ZNF592 Nonsense_Mutation p.E150* 0.30 TCGA-BH-A0DZ-01 16 11971338 11971338 C G GSPT1 Missense_Mutation p.E510Q 0.25 deleterious(0) possibly_damaging(0.824) TCGA-BH-A0DZ-01 16 1270974 1270974 G A CACNA1H Missense_Mutation p.G2348S 0.50 tolerated_low_confidence(0.98) unknown(0) TCGA-BH-A0DZ-01 16 15045813 15045813 C G NPIPA1 Silent p.L328L 0.09 TCGA-BH-A0DZ-01 16 15785109 15785109 C T NDE1 Missense_Mutation p.S211F 0.12 deleterious(0.04) possibly_damaging(0.8) TCGA-BH-A0DZ-01 16 24965944 24965944 C T ARHGAP17 Missense_Mutation p.E278K 0.40 deleterious(0.01) probably_damaging(0.964) TCGA-BH-A0DZ-01 16 2815760 2815760 G A SRRM2 Missense_Mutation p.R1744Q 0.44 unknown(0) TCGA-BH-A0DZ-01 16 28986810 28986810 C T SPNS1 Intron 0.25 TCGA-BH-A0DZ-01 16 68014005 68014005 G A DPEP3 Silent p.L118L 0.40 TCGA-BH-A0DZ-01 16 68224697 68224697 G C NFATC3 Missense_Mutation p.E709Q 0.47 deleterious(0.01) benign(0.405) TCGA-BH-A0DZ-01 16 68224886 68224886 G A NFATC3 Missense_Mutation p.E772K 0.40 tolerated_low_confidence(0.98) benign(0.41) TCGA-BH-A0DZ-01 16 71319082 71319082 C G CMTR2 Missense_Mutation p.E248Q 0.44 deleterious(0) probably_damaging(1) TCGA-BH-A0DZ-01 17 11806120 11806120 G A DNAH9 Missense_Mutation p.E3831K 0.34 possibly_damaging(0.797) TCGA-BH-A0DZ-01 17 27086281 27086281 C T FAM222B Silent p.K232K 0.07 TCGA-BH-A0DZ-01 17 27185181 27185181 C T ERAL1 Missense_Mutation p.S185F 0.04 deleterious(0) probably_damaging(0.95) TCGA-BH-A0DZ-01 17 27308492 27308492 C T SEZ6 Silent p.G207G 0.08 TCGA-BH-A0DZ-01 17 29227285 29227285 G T TEFM Intron 0.35 TCGA-BH-A0DZ-01 17 38066146 38066146 G A GSDMB Nonsense_Mutation p.R147* 0.06 TCGA-BH-A0DZ-01 17 42929858 42929858 G A EFTUD2 Silent p.I878I 0.47 TCGA-BH-A0DZ-01 17 4686485 4686485 G A TM4SF5 3'UTR 0.32 TCGA-BH-A0DZ-01 17 47000219 47000219 G T UBE2Z Nonsense_Mutation p.E272* 0.06 TCGA-BH-A0DZ-01 17 47394802 47394802 C G ZNF652 Missense_Mutation p.D96H 0.03 tolerated(0.08) benign(0.28) TCGA-BH-A0DZ-01 17 57139966 57139966 G C TRIM37 Missense_Mutation p.Q302E 0.13 tolerated(0.15) possibly_damaging(0.597) TCGA-BH-A0DZ-01 17 58073396 58073396 C T RP11-178C3.2 RNA 0.06 TCGA-BH-A0DZ-01 17 60821843 60821843 C G MARCH10 Silent p.L143L 0.27 TCGA-BH-A0DZ-01 17 61570989 61570989 C G ACE Silent p.L1035L 0.08 TCGA-BH-A0DZ-01 17 62522212 62522212 C T CEP95 Missense_Mutation p.S349L 0.03 tolerated(0.12) benign(0.013) TCGA-BH-A0DZ-01 17 62850518 62850518 C G LRRC37A3 3'UTR 0.06 TCGA-BH-A0DZ-01 17 62969044 62969044 T A AMZ2P1 Intron 0.37 TCGA-BH-A0DZ-01 17 6515265 6515265 C G KIAA0753 Missense_Mutation p.D507H 0.43 deleterious(0.05) possibly_damaging(0.882) TCGA-BH-A0DZ-01 17 65916216 65916216 C G BPTF Missense_Mutation p.I1838M 0.18 probably_damaging(0.936) TCGA-BH-A0DZ-01 17 66881408 66881408 C T ABCA8 Missense_Mutation p.D1120N 0.20 tolerated(0.5) benign(0.102) TCGA-BH-A0DZ-01 17 6690652 6690652 G A FBXO39 Missense_Mutation p.E412K 0.42 deleterious(0.04) benign(0.015) TCGA-BH-A0DZ-01 17 68171693 68171693 C G KCNJ2 Missense_Mutation p.I171M 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-BH-A0DZ-01 17 7577509 7577509 C G TP53 Missense_Mutation p.E258Q 0.41 deleterious(0) probably_damaging(0.96) TCGA-BH-A0DZ-01 17 8051337 8051337 G A PER1 Silent p.L404L 0.57 TCGA-BH-A0DZ-01 18 14752623 14752623 G C ANKRD30B Missense_Mutation p.D94H 0.23 deleterious(0) probably_damaging(0.996) TCGA-BH-A0DZ-01 18 50929215 50929215 G A DCC Missense_Mutation p.V963I 0.28 tolerated(1) benign(0.041) TCGA-BH-A0DZ-01 18 5433979 5433979 G A EPB41L3 Silent p.Y249Y 0.04 TCGA-BH-A0DZ-01 19 11978285 11978285 C T ZNF439 Missense_Mutation p.S134F 0.31 deleterious(0.05) probably_damaging(0.998) TCGA-BH-A0DZ-01 19 14029787 14029787 G C CC2D1A Missense_Mutation p.V361L 0.30 tolerated(0.29) benign(0.022) TCGA-BH-A0DZ-01 19 1783049 1783049 G A ATP8B3 Missense_Mutation p.S1294L 0.64 tolerated(0.49) benign(0.001) TCGA-BH-A0DZ-01 19 18686103 18686103 C T UBA52 3'UTR 0.16 TCGA-BH-A0DZ-01 19 18731260 18731260 G A TMEM59L Missense_Mutation p.D315N 0.35 tolerated(0.15) benign(0.004) TCGA-BH-A0DZ-01 19 22847268 22847268 C G ZNF492 Nonsense_Mutation p.S266* 0.26 TCGA-BH-A0DZ-01 19 39971368 39971368 G C TIMM50 Missense_Mutation p.D62H 0.30 deleterious_low_confidence(0) benign(0.125) TCGA-BH-A0DZ-01 19 40947304 40947304 G A SERTAD3 3'UTR 0.33 TCGA-BH-A0DZ-01 19 43428947 43428947 G A PSG7 3'UTR 0.05 TCGA-BH-A0DZ-01 19 43763165 43763165 G C PSG9 Missense_Mutation p.Q278E 0.29 tolerated(0.26) benign(0.026) TCGA-BH-A0DZ-01 19 54264407 54264407 G A MIR516A2 RNA 0.24 TCGA-BH-A0DZ-01 19 59059946 59059946 C G TRIM28 Missense_Mutation p.S437C 0.20 deleterious(0.01) benign(0.001) TCGA-BH-A0DZ-01 1 11317097 11317097 G C MTOR Missense_Mutation p.L133V 0.59 deleterious(0) probably_damaging(0.991) TCGA-BH-A0DZ-01 1 120484367 120484367 C T NOTCH2 Silent p.Q921Q 0.28 TCGA-BH-A0DZ-01 1 153303193 153303193 G A PGLYRP4 3'UTR 0.09 TCGA-BH-A0DZ-01 1 154090314 154090314 C A NUP210L Nonsense_Mutation p.E503* 0.04 TCGA-BH-A0DZ-01 1 156046487 156046487 G A MEX3A Missense_Mutation p.L481F 0.20 deleterious(0) probably_damaging(0.995) TCGA-BH-A0DZ-01 1 157659599 157659599 C T FCRL3 Missense_Mutation p.R600Q 0.32 tolerated(1) benign(0.001) TCGA-BH-A0DZ-01 1 160136489 160136489 G C ATP1A4 Missense_Mutation p.E407Q 0.44 tolerated(0.08) benign(0.01) TCGA-BH-A0DZ-01 1 161026205 161026205 G C ARHGAP30 Silent p.L106L 0.25 TCGA-BH-A0DZ-01 1 16260889 16260889 G A SPEN Silent p.V2718V 0.29 TCGA-BH-A0DZ-01 1 171154948 171154948 G C FMO2 Missense_Mutation p.E32D 0.25 deleterious(0) probably_damaging(0.992) TCGA-BH-A0DZ-01 1 172558405 172558405 G C SUCO Missense_Mutation p.E722Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-BH-A0DZ-01 1 17292567 17292567 C A CROCC Missense_Mutation p.T1550N 0.31 benign(0.005) TCGA-BH-A0DZ-01 1 180034352 180034352 G A CEP350 Missense_Mutation p.E1838K 0.49 probably_damaging(0.999) TCGA-BH-A0DZ-01 1 200586951 200586951 G C KIF14 Missense_Mutation p.P301A 0.27 tolerated(0.95) benign(0) TCGA-BH-A0DZ-01 1 216373262 216373262 G A USH2A Missense_Mutation p.S1173L 0.29 benign(0.049) TCGA-BH-A0DZ-01 1 223984261 223984261 C T TP53BP2 Silent p.Q660Q 0.08 TCGA-BH-A0DZ-01 1 247978932 247978932 A C OR14A16 Missense_Mutation p.L34V 0.04 deleterious(0.02) possibly_damaging(0.601) TCGA-BH-A0DZ-01 1 248845114 248845114 C T OR14I1 Silent p.E164E 0.27 TCGA-BH-A0DZ-01 1 46763977 46763977 C T LRRC41 Missense_Mutation p.E89K 0.16 deleterious(0) possibly_damaging(0.905) TCGA-BH-A0DZ-01 1 47501739 47501739 T G CYP4X1 Missense_Mutation p.F224C 0.41 tolerated(0.15) probably_damaging(0.935) TCGA-BH-A0DZ-01 1 7902937 7902937 G C PER3 3'UTR 0.55 TCGA-BH-A0DZ-01 20 25443055 25443055 C A NINL Missense_Mutation p.Q1182H 0.17 tolerated(0.17) benign(0.003) TCGA-BH-A0DZ-01 20 47601269 47601269 C G ARFGEF2 Missense_Mutation p.F654L 0.29 deleterious(0) probably_damaging(1) TCGA-BH-A0DZ-01 20 60551181 60551181 G A TAF4 3'UTR 0.38 TCGA-BH-A0DZ-01 21 40571393 40571393 G C BRWD1 Missense_Mutation p.S1650C 0.37 tolerated(0.1) probably_damaging(0.96) TCGA-BH-A0DZ-01 21 44153465 44153465 G A PDE9A Splice_Site p.X166_splice 0.33 TCGA-BH-A0DZ-01 22 19959495 19959495 C G ARVCF Splice_Site p.X899_splice 0.31 TCGA-BH-A0DZ-01 22 26868878 26868878 C G HPS4 Missense_Mutation p.D102H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DZ-01 22 37640284 37640284 G C RAC2 5'UTR 0.25 TCGA-BH-A0DZ-01 22 41573738 41573738 C T EP300 Missense_Mutation p.S2008F 0.26 benign(0.046) TCGA-BH-A0DZ-01 22 46136266 46136266 C T ATXN10 Missense_Mutation p.H341Y 0.28 deleterious(0) possibly_damaging(0.87) TCGA-BH-A0DZ-01 2 113251897 113251897 G A TTL Silent p.K138K 0.04 TCGA-BH-A0DZ-01 2 128409206 128409206 C T GPR17 Silent p.F327F 0.50 TCGA-BH-A0DZ-01 2 138721980 138721980 G A HNMT 5'UTR 0.34 TCGA-BH-A0DZ-01 2 149806935 149806935 C T KIF5C Silent p.F309F 0.34 TCGA-BH-A0DZ-01 2 160994606 160994606 C G ITGB6 Missense_Mutation p.K404N 0.34 deleterious(0) probably_damaging(0.98) TCGA-BH-A0DZ-01 2 163139083 163139083 G A IFIH1 Silent p.L367L 0.15 TCGA-BH-A0DZ-01 2 170489946 170489946 G C PPIG Intron 0.28 TCGA-BH-A0DZ-01 2 207174156 207174156 C A ZDBF2 Missense_Mutation p.S1635Y 0.07 deleterious(0.01) possibly_damaging(0.608) TCGA-BH-A0DZ-01 2 228884261 228884261 C G SPHKAP Missense_Mutation p.D437H 0.27 deleterious(0.02) benign(0.062) TCGA-BH-A0DZ-01 2 232378274 232378274 C G LINC00471 RNA 0.25 TCGA-BH-A0DZ-01 2 25972681 25972681 C G ASXL2 Missense_Mutation p.E582Q 0.26 deleterious(0) probably_damaging(0.973) TCGA-BH-A0DZ-01 2 27801094 27801094 C T C2orf16 Missense_Mutation p.S552L 0.27 tolerated(0.05) benign(0.406) TCGA-BH-A0DZ-01 2 54152703 54152703 G T PSME4 Silent p.L594L 0.05 TCGA-BH-A0DZ-01 2 73447268 73447268 G C SMYD5 Missense_Mutation p.E99Q 0.33 tolerated(0.12) possibly_damaging(0.628) TCGA-BH-A0DZ-01 2 97783882 97783882 C T ANKRD36 Silent p.L93L 0.36 TCGA-BH-A0DZ-01 3 121238843 121238843 G T POLQ Missense_Mutation p.S448Y 0.33 deleterious(0) probably_damaging(0.954) TCGA-BH-A0DZ-01 3 122662297 122662297 G T SEMA5B Silent p.L192L 0.38 TCGA-BH-A0DZ-01 3 124141732 124141732 G C KALRN Missense_Mutation p.E870D 0.04 tolerated(0.24) benign(0.03) TCGA-BH-A0DZ-01 3 125249280 125249280 C T OSBPL11 3'UTR 0.27 TCGA-BH-A0DZ-01 3 126185056 126185056 G C ZXDC Silent p.L461L 0.43 TCGA-BH-A0DZ-01 3 185165697 185165697 G C MAP3K13 Silent p.V324V 0.28 TCGA-BH-A0DZ-01 3 3098015 3098015 G C CNTN4 3'UTR 0.38 TCGA-BH-A0DZ-01 3 37368485 37368485 C G GOLGA4 Nonsense_Mutation p.S1725* 0.32 TCGA-BH-A0DZ-01 3 45134773 45134773 G A CDCP1 Silent p.F541F 0.37 TCGA-BH-A0DZ-01 3 51457398 51457398 G T VPRBP Missense_Mutation p.T580K 0.03 tolerated(0.08) benign(0.069) TCGA-BH-A0DZ-01 4 155507703 155507703 C A FGA Missense_Mutation p.G293V 0.32 deleterious(0.01) probably_damaging(0.953) TCGA-BH-A0DZ-01 4 186510869 186510869 C T SORBS2 Missense_Mutation p.D1169N 0.39 deleterious(0.01) possibly_damaging(0.541) TCGA-BH-A0DZ-01 4 37962331 37962331 G C PTTG2 Missense_Mutation p.K92N 0.31 deleterious(0.04) benign(0.331) TCGA-BH-A0DZ-01 4 38879718 38879718 G A FAM114A1 Missense_Mutation p.D7N 0.33 tolerated_low_confidence(0.09) benign(0.04) TCGA-BH-A0DZ-01 4 39310356 39310356 G C RFC1 Silent p.L595L 0.29 TCGA-BH-A0DZ-01 4 437193 437193 G C ZNF721 Missense_Mutation p.H355D 0.30 deleterious(0) probably_damaging(1) TCGA-BH-A0DZ-01 4 48081956 48081956 C T TXK Silent p.E382E 0.25 TCGA-BH-A0DZ-01 4 57314891 57314891 G C PAICS Missense_Mutation p.D204H 0.25 benign(0.021) TCGA-BH-A0DZ-01 4 70346610 70346610 C G UGT2B4 Missense_Mutation p.M443I 0.28 deleterious(0.03) benign(0.017) TCGA-BH-A0DZ-01 4 77357221 77357221 G A SHROOM3 Missense_Mutation p.E6K 0.32 deleterious_low_confidence(0.01) benign(0.321) TCGA-BH-A0DZ-01 4 79188530 79188530 G A FRAS1 Missense_Mutation p.D309N 0.26 benign(0.012) TCGA-BH-A0DZ-01 5 140012778 140012778 C T CD14 5'UTR 0.42 TCGA-BH-A0DZ-01 5 149636190 149636190 G C CAMK2A Missense_Mutation p.I119M 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-BH-A0DZ-01 5 54923793 54923793 C G SLC38A9 Silent p.L482L 0.34 TCGA-BH-A0DZ-01 5 56171088 56171088 T C MAP3K1 Missense_Mutation p.L639P 0.22 deleterious(0) probably_damaging(0.998) TCGA-BH-A0DZ-01 5 79028279 79028279 C T CMYA5 Missense_Mutation p.P1231S 0.06 probably_damaging(0.992) TCGA-BH-A0DZ-01 5 96322354 96322354 C T LNPEP Nonsense_Mutation p.Q371* 0.06 TCGA-BH-A0DZ-01 6 114379009 114379009 G A HS3ST5 Silent p.I151I 0.45 TCGA-BH-A0DZ-01 6 127648195 127648195 G C ECHDC1 Missense_Mutation p.F111L 0.29 deleterious(0.05) probably_damaging(0.979) TCGA-BH-A0DZ-01 6 136990511 136990511 C T MAP3K5 Missense_Mutation p.E426K 0.28 deleterious(0) probably_damaging(0.997) TCGA-BH-A0DZ-01 6 13801528 13801528 C G MCUR1 Missense_Mutation p.E245Q 0.10 deleterious(0.02) probably_damaging(0.951) TCGA-BH-A0DZ-01 6 143095891 143095891 C G HIVEP2 5'UTR 0.31 TCGA-BH-A0DZ-01 6 150285181 150285181 C T ULBP1 5'UTR 0.33 TCGA-BH-A0DZ-01 6 152642474 152642474 C G SYNE1 Missense_Mutation p.E5379Q 0.29 possibly_damaging(0.827) TCGA-BH-A0DZ-01 6 168352759 168352759 G C MLLT4 Missense_Mutation p.K1568N 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A0DZ-01 6 17637546 17637546 C G NUP153 Missense_Mutation p.E768Q 0.13 tolerated(0.45) benign(0.071) TCGA-BH-A0DZ-01 6 17797021 17797021 G A KIF13A Silent p.L941L 0.31 TCGA-BH-A0DZ-01 6 24706365 24706365 C G C6orf62 Nonstop_Mutation p.*230Yext*51 0.37 TCGA-BH-A0DZ-01 6 29455047 29455047 G A MAS1L Silent p.F211F 0.34 TCGA-BH-A0DZ-01 6 32261367 32261367 C T C6orf10 Silent p.L361L 0.31 TCGA-BH-A0DZ-01 6 38891783 38891783 C G DNAH8 Missense_Mutation p.L3386V 0.30 probably_damaging(0.996) TCGA-BH-A0DZ-01 6 46806828 46806828 G C MEP1A Missense_Mutation p.L732F 0.37 deleterious(0.01) probably_damaging(0.946) TCGA-BH-A0DZ-01 6 49754988 49754988 C G PGK2 5'UTR 0.36 TCGA-BH-A0DZ-01 6 51503731 51503731 C G PKHD1 Missense_Mutation p.D3808H 0.31 deleterious(0.04) possibly_damaging(0.778) TCGA-BH-A0DZ-01 6 51890550 51890550 G C PKHD1 Missense_Mutation p.S1353C 0.32 deleterious(0) possibly_damaging(0.823) TCGA-BH-A0DZ-01 6 53883803 53883803 C G MLIP 5'UTR 0.31 TCGA-BH-A0DZ-01 6 54066989 54066989 C T MLIP Silent p.F357F 0.30 TCGA-BH-A0DZ-01 6 54806423 54806423 C T FAM83B Missense_Mutation p.S885F 0.29 deleterious(0) probably_damaging(0.999) TCGA-BH-A0DZ-01 7 103322585 103322585 C T RELN Missense_Mutation p.E423K 0.43 tolerated(0.11) probably_damaging(0.98) TCGA-BH-A0DZ-01 7 111575671 111575671 C T DOCK4 Silent p.E330E 0.15 TCGA-BH-A0DZ-01 7 140082355 140082355 G C SLC37A3 5'UTR 0.14 TCGA-BH-A0DZ-01 7 19184707 19184707 C T FERD3L Silent p.K93K 0.29 TCGA-BH-A0DZ-01 7 21813441 21813441 G C DNAH11 Missense_Mutation p.E3061Q 0.35 benign(0.127) TCGA-BH-A0DZ-01 7 27839637 27839637 G A TAX1BP1 Silent p.L564L 0.29 TCGA-BH-A0DZ-01 7 40220545 40220545 G C SUGCT Splice_Site p.X41_splice 0.28 TCGA-BH-A0DZ-01 7 72717376 72717376 C G NSUN5 3'UTR 0.17 TCGA-BH-A0DZ-01 8 107781891 107781891 C T ABRA Silent p.V176V 0.28 TCGA-BH-A0DZ-01 8 139606409 139606409 G A COL22A1 Missense_Mutation p.P1489L 0.57 unknown(0) TCGA-BH-A0DZ-01 8 22084524 22084524 C A PHYHIP Missense_Mutation p.K60N 0.19 deleterious(0.03) benign(0.386) TCGA-BH-A0DZ-01 8 25702086 25702086 A T EBF2 3'UTR 0.30 TCGA-BH-A0DZ-01 8 30982427 30982427 C T WRN Silent p.I912I 0.32 TCGA-BH-A0DZ-01 8 35542203 35542203 C G UNC5D Silent p.L285L 0.28 TCGA-BH-A0DZ-01 8 61654206 61654206 A G CHD7 Missense_Mutation p.Y72C 0.23 possibly_damaging(0.759) TCGA-BH-A0DZ-01 9 104313984 104313984 C T RNF20 Missense_Mutation p.H431Y 0.29 deleterious(0) benign(0.152) TCGA-BH-A0DZ-01 9 130653020 130653020 G A ST6GALNAC6 Silent p.I200I 0.25 TCGA-BH-A0DZ-01 9 131196437 131196437 G A CERCAM Silent p.E420E 0.29 TCGA-BH-A0DZ-01 9 34650571 34650571 C G GALT 3'UTR 0.33 TCGA-BH-A0DZ-01 9 6015088 6015088 C G RANBP6 Missense_Mutation p.E174Q 0.34 tolerated(1) benign(0.001) TCGA-BH-A0DZ-01 9 71144664 71144664 G A PGM5 3'UTR 0.21 TCGA-BH-A0DZ-01 9 71155566 71155566 C T TMEM252 Silent p.L55L 0.21 TCGA-BH-A0DZ-01 9 79322986 79322986 C G PRUNE2 Missense_Mutation p.E1402Q 0.09 tolerated(0.06) benign(0.091) TCGA-BH-A0DZ-01 9 84548060 84548060 C G RP11-383M4.6 Intron 0.24 TCGA-BH-A0DZ-01 X 119005192 119005192 C T RNF113A Missense_Mutation p.D129N 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-BH-A0DZ-01 X 1407734 1407734 G A CSF2RA Silent p.P142P 0.33 TCGA-BH-A0DZ-01 X 24580566 24580566 C G PCYT1B Missense_Mutation p.Q318H 0.33 tolerated(0.24) benign(0.19) TCGA-BH-A0DZ-01 X 34961041 34961041 G A FAM47B Silent p.A31A 0.38 TCGA-BH-A0DZ-01 X 40569291 40569291 C T MED14 Silent p.Q371Q 0.24 TCGA-BH-A0DZ-01 X 41091872 41091872 A T USP9X 3'UTR 0.29 TCGA-BH-A0DZ-01 X 55514740 55514740 C G USP51 Silent p.L211L 0.13 TCGA-BH-A0DZ-01 X 63548723 63548723 G A MTMR8 Silent p.F470F 0.29 TCGA-BH-A0DZ-01 X 70683834 70683834 G A TAF1 Missense_Mutation p.E1874K 0.25 tolerated_low_confidence(0.12) benign(0.037) TCGA-BH-A0DZ-01 X 86869457 86869457 C A KLHL4 Missense_Mutation p.S204Y 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A0E0-01 10 135106688 135106688 C T TUBGCP2 Silent p.A321A 0.15 TCGA-BH-A0E0-01 11 104778464 104778464 A T RP11-693N9.2 Intron 0.19 TCGA-BH-A0E0-01 11 118967995 118967995 G A DPAGT1 Missense_Mutation p.L340F 0.38 tolerated(0.46) benign(0.008) TCGA-BH-A0E0-01 12 977147 977147 C G WNK1 Intron 0.16 TCGA-BH-A0E0-01 13 46086127 46086127 G A COG3 Intron 0.31 TCGA-BH-A0E0-01 16 70916787 70916787 C T HYDIN Missense_Mutation p.E3331K 0.45 benign(0.018) TCGA-BH-A0E0-01 18 7050726 7050726 A C LAMA1 Nonsense_Mutation p.Y185* 0.18 TCGA-BH-A0E0-01 19 57089741 57089741 T C ZNF470 Silent p.P648P 0.29 TCGA-BH-A0E0-01 19 57910907 57910907 G C ZNF548 Missense_Mutation p.E430Q 0.21 deleterious(0.01) possibly_damaging(0.811) TCGA-BH-A0E0-01 1 152128599 152128599 C A RPTN Missense_Mutation p.G326C 0.09 deleterious(0) probably_damaging(0.995) TCGA-BH-A0E0-01 1 155184093 155184093 G A MTX1 3'Flank 0.18 TCGA-BH-A0E0-01 1 159558311 159558311 A G APCS Missense_Mutation p.K162R 0.10 tolerated(0.16) benign(0.001) TCGA-BH-A0E0-01 1 220162120 220162121 - ATC EPRS In_Frame_Ins p.A862_Q863insD 0.55 TCGA-BH-A0E0-01 20 30617623 30617623 C T CCM2L 3'UTR 0.12 TCGA-BH-A0E0-01 2 29432665 29432665 G A ALK Nonsense_Mutation p.R1275* 0.18 TCGA-BH-A0E0-01 3 38941399 38941399 G A SCN11A Missense_Mutation p.R670C 0.47 deleterious(0) probably_damaging(0.937) TCGA-BH-A0E0-01 3 49413010 49413010 G A RHOA Missense_Mutation p.R5W 0.28 deleterious(0.02) benign(0.007) TCGA-BH-A0E0-01 5 78181573 78181573 C T ARSB Missense_Mutation p.V326I 0.24 tolerated(0.81) benign(0.005) TCGA-BH-A0E0-01 6 152472809 152472809 C T SYNE1 Missense_Mutation p.R8110H 0.22 probably_damaging(0.998) TCGA-BH-A0E0-01 6 36976680 36976680 G A FGD2 Missense_Mutation p.E47K 0.36 tolerated_low_confidence(0.88) benign(0.009) TCGA-BH-A0E0-01 7 100683830 100683830 A T MUC17 Missense_Mutation p.S3045C 0.16 probably_damaging(0.961) TCGA-BH-A0E0-01 7 4285428 4285428 A C SDK1 Silent p.S2124S 0.11 TCGA-BH-A0E0-01 7 7680078 7680078 G A RPA3 5'UTR 0.33 TCGA-BH-A0E0-01 X 3238686 3238686 T G MXRA5 Missense_Mutation p.K1680N 0.17 tolerated(0.48) benign(0.012) TCGA-BH-A0E0-01 X 3239606 3239606 A T MXRA5 Missense_Mutation p.F1374I 0.20 tolerated(0.1) benign(0.011) TCGA-BH-A0E1-01 10 88769294 88769294 C T RP11-96C23.10 3'Flank 0.30 TCGA-BH-A0E1-01 11 55872938 55872938 C T OR8H2 Silent p.L140L 0.32 TCGA-BH-A0E1-01 12 10978407 10978407 A C TAS2R10 Nonsense_Mutation p.Y154* 0.14 TCGA-BH-A0E1-01 12 6630248 6630248 C G NCAPD2 Silent p.L562L 0.27 TCGA-BH-A0E1-01 12 6702280 6702280 G A CHD4 Missense_Mutation p.R877W 0.31 deleterious(0) probably_damaging(0.965) TCGA-BH-A0E1-01 14 77948868 77948868 T C ISM2 Missense_Mutation p.E257G 0.17 deleterious(0.04) benign(0.032) TCGA-BH-A0E1-01 16 30129759 30129759 G A MAPK3 Missense_Mutation p.R152W 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A0E1-01 17 41368593 41368593 T C TMEM106A Silent p.P185P 0.38 TCGA-BH-A0E1-01 17 45773450 45773450 C G TBKBP1 5'UTR 0.21 TCGA-BH-A0E1-01 19 19031392 19031392 G A DDX49 Missense_Mutation p.R40Q 0.28 tolerated(0.4) benign(0.018) TCGA-BH-A0E1-01 1 19468234 19468234 C G UBR4 Missense_Mutation p.E2739D 0.36 benign(0) TCGA-BH-A0E1-01 2 21236250 21236250 C T APOB Missense_Mutation p.R1333Q 0.34 benign(0.001) TCGA-BH-A0E1-01 3 124951620 124951620 G C ZNF148 Silent p.V650V 0.04 TCGA-BH-A0E1-01 3 185985540 185985540 C T DGKG Silent p.T381T 0.29 TCGA-BH-A0E1-01 4 23814725 23814725 C T PPARGC1A Missense_Mutation p.S606N 0.33 tolerated_low_confidence(0.26) unknown(0) TCGA-BH-A0E1-01 6 100897266 100897266 G A SIM1 Silent p.N172N 0.43 TCGA-BH-A0E1-01 6 151247259 151247259 G A MTHFD1L Missense_Mutation p.D362N 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A0E1-01 7 158552764 158552764 C T ESYT2 Silent p.A484A 0.29 TCGA-BH-A0E1-01 X 12903835 12903835 C T TLR7 Missense_Mutation p.L70F 0.32 deleterious(0) benign(0.242) TCGA-BH-A0E9-01 10 89685316 89685316 T - PTEN Splice_Site p.X70_splice 0.22 TCGA-BH-A0E9-01 11 77702264 77702265 - T INTS4 Frame_Shift_Ins p.A46Sfs*40 0.12 TCGA-BH-A0E9-01 12 109617027 109617027 G T ACACB Missense_Mutation p.Q524H 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0E9-01 12 31613193 31613193 G C DENND5B Missense_Mutation p.P343A 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A0E9-01 12 40704428 40704434 ATAAACG - LRRK2 Frame_Shift_Del p.I1505Rfs*16 0.14 TCGA-BH-A0E9-01 12 53663662 53663662 C A ESPL1 Silent p.A312A 0.14 TCGA-BH-A0E9-01 12 96661067 96661067 G C ELK3 3'UTR 0.24 TCGA-BH-A0E9-01 14 77812775 77812775 G A TMED8 Missense_Mutation p.R82W 0.04 deleterious_low_confidence(0) benign(0.394) TCGA-BH-A0E9-01 15 84611448 84611448 C T ADAMTSL3 Missense_Mutation p.P740S 0.08 tolerated(0.77) benign(0.004) TCGA-BH-A0E9-01 16 68862178 68862179 - AT CDH1 Frame_Shift_Ins p.E757Mfs*14 0.15 TCGA-BH-A0E9-01 17 38812871 38812871 A T KRT222 Missense_Mutation p.V224E 0.11 deleterious(0) probably_damaging(0.997) TCGA-BH-A0E9-01 17 4883016 4883016 G C CAMTA2 Missense_Mutation p.T557S 0.18 tolerated(0.5) benign(0.005) TCGA-BH-A0E9-01 19 2807655 2807655 G A THOP1 Missense_Mutation p.G368R 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0E9-01 1 156640274 156640274 G A NES Nonsense_Mutation p.Q1236* 0.58 TCGA-BH-A0E9-01 1 160604564 160604564 G A SLAMF1 Missense_Mutation p.A180V 0.06 tolerated(0.12) benign(0.023) TCGA-BH-A0E9-01 1 57341750 57341750 G A C8A Missense_Mutation p.R111H 0.05 deleterious(0.01) possibly_damaging(0.496) TCGA-BH-A0E9-01 1 70694176 70694176 C T SRSF11 Missense_Mutation p.A92V 0.07 deleterious(0) unknown(0) TCGA-BH-A0E9-01 1 87805767 87805767 C T LMO4 Missense_Mutation p.P124L 0.27 tolerated(0.25) probably_damaging(0.986) TCGA-BH-A0E9-01 2 188228221 188228221 C T CALCRL Missense_Mutation p.S170N 0.06 deleterious(0.01) possibly_damaging(0.688) TCGA-BH-A0E9-01 2 27700992 27700992 C T IFT172 Missense_Mutation p.R346Q 0.04 tolerated(0.18) benign(0.091) TCGA-BH-A0E9-01 2 84806798 84806798 G A DNAH6 Missense_Mutation p.E742K 0.03 tolerated(0.27) benign(0.015) TCGA-BH-A0E9-01 3 183209733 183209733 G A KLHL6 Silent p.P616P 0.16 TCGA-BH-A0E9-01 3 184064449 184064449 C T CLCN2 Missense_Mutation p.R881H 0.07 tolerated(0.47) benign(0.001) TCGA-BH-A0E9-01 3 50151449 50151449 T - RBM5 Frame_Shift_Del p.Q563Sfs*6 0.19 TCGA-BH-A0E9-01 4 26432075 26432075 T C RBPJ Missense_Mutation p.L373P 0.07 deleterious(0.03) possibly_damaging(0.538) TCGA-BH-A0E9-01 4 59392 59392 C A ZNF595 Missense_Mutation p.Q25K 0.04 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BH-A0E9-01 4 86243 86243 C A Z95704.2 RNA 0.15 TCGA-BH-A0E9-01 5 137475717 137475717 C T BRD8 3'UTR 0.28 TCGA-BH-A0E9-01 6 42025139 42025139 A G TAF8 Missense_Mutation p.N126S 0.07 tolerated(0.37) benign(0.01) TCGA-BH-A0E9-01 8 88365988 88365988 C T CNBD1 Missense_Mutation p.A426V 0.17 deleterious(0.03) probably_damaging(0.947) TCGA-BH-A0E9-01 9 114989844 114989844 T C PTBP3 Missense_Mutation p.H438R 0.17 deleterious(0) possibly_damaging(0.736) TCGA-BH-A0E9-01 9 2729502 2729503 - T KCNV2 Frame_Shift_Ins p.A474Cfs*25 0.10 TCGA-BH-A0E9-01 9 34371779 34371779 G A KIAA1161 Missense_Mutation p.T354M 0.07 deleterious(0) probably_damaging(0.994) TCGA-BH-A0E9-01 X 103349492 103349492 C T SLC25A53 Missense_Mutation p.R150H 0.19 tolerated(0.08) possibly_damaging(0.795) TCGA-BH-A0EA-01 10 65024506 65024506 C T JMJD1C Missense_Mutation p.E118K 0.23 deleterious(0.03) benign(0.11) TCGA-BH-A0EA-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.20 TCGA-BH-A0EA-01 10 88769302 88769302 C T RP11-96C23.10 3'Flank 0.04 TCGA-BH-A0EA-01 12 6936041 6936041 G A GPR162 Missense_Mutation p.R480H 0.24 tolerated(0.19) benign(0.003) TCGA-BH-A0EA-01 12 7890152 7890152 G T CLEC4C Missense_Mutation p.T85N 0.21 tolerated(0.29) benign(0.052) TCGA-BH-A0EA-01 12 8290866 8290866 A T CLEC4A Missense_Mutation p.M233L 0.29 tolerated(0.18) benign(0.005) TCGA-BH-A0EA-01 14 88946292 88946292 C T PTPN21 Missense_Mutation p.E495K 0.08 deleterious(0) probably_damaging(0.995) TCGA-BH-A0EA-01 14 92278710 92278710 A G TC2N Missense_Mutation p.S83P 0.20 deleterious(0) benign(0.05) TCGA-BH-A0EA-01 16 28935782 28935782 C T RABEP2 Silent p.V72V 0.24 TCGA-BH-A0EA-01 16 4749135 4749135 G A ANKS3 Silent p.L443L 0.04 TCGA-BH-A0EA-01 16 67100613 67100613 A G CBFB Missense_Mutation p.N104S 0.32 deleterious(0) benign(0.271) TCGA-BH-A0EA-01 17 71394498 71394498 G A SDK2 Missense_Mutation p.S1055F 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-BH-A0EA-01 18 67727270 67727270 C A RTTN Nonsense_Mutation p.E1586* 0.26 TCGA-BH-A0EA-01 19 31767562 31767562 C T TSHZ3 Missense_Mutation p.C1046Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-BH-A0EA-01 1 29630376 29630376 G A PTPRU Missense_Mutation p.R839H 0.28 tolerated(0.34) benign(0.075) TCGA-BH-A0EA-01 22 38528920 38528920 C A PLA2G6 Missense_Mutation p.C332F 0.19 deleterious(0) possibly_damaging(0.739) TCGA-BH-A0EA-01 2 120725478 120725478 A G PTPN4 Missense_Mutation p.N875S 0.16 tolerated(0.2) benign(0.002) TCGA-BH-A0EA-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0EA-01 3 58260438 58260438 G A ABHD6 Missense_Mutation p.G193S 0.07 tolerated(0.6) benign(0.012) TCGA-BH-A0EA-01 5 134210139 134210139 C T TXNDC15 Nonsense_Mutation p.R8* 0.18 TCGA-BH-A0EA-01 5 137244512 137244512 G A PKD2L2 Missense_Mutation p.R402H 0.13 tolerated(0.05) probably_damaging(0.968) TCGA-BH-A0EA-01 5 31799548 31799548 G A PDZD2 Missense_Mutation p.E65K 0.20 tolerated(0.08) benign(0.295) TCGA-BH-A0EA-01 6 43538686 43538686 G C XPO5 Missense_Mutation p.L116V 0.16 tolerated(0.26) benign(0.284) TCGA-BH-A0EA-01 7 148801590 148801590 C T ZNF425 Missense_Mutation p.R458H 0.44 deleterious(0.05) benign(0.025) TCGA-BH-A0EA-01 7 6085747 6085747 T A EIF2AK1 Silent p.I195I 0.27 TCGA-BH-A0EA-01 7 73008607 73008607 G A MLXIPL Missense_Mutation p.P813S 0.11 deleterious(0) probably_damaging(0.999) TCGA-BH-A0EA-01 7 98586499 98586499 G A TRRAP Silent p.R3171R 0.07 TCGA-BH-A0EA-01 8 121238949 121238949 G A COL14A1 Missense_Mutation p.D650N 0.17 tolerated(0.19) possibly_damaging(0.582) TCGA-BH-A0EA-01 8 144688652 144688652 G A PYCRL Silent p.G190G 0.27 TCGA-BH-A0EA-01 8 2017580 2017580 G A MYOM2 Missense_Mutation p.E253K 0.06 tolerated(0.17) possibly_damaging(0.731) TCGA-BH-A0EA-01 8 48839867 48839867 C T PRKDC Missense_Mutation p.G769D 0.20 possibly_damaging(0.847) TCGA-BH-A0EA-01 8 49831301 49831301 T C SNAI2 3'UTR 0.06 TCGA-BH-A0EA-01 X 34961839 34961839 G A FAM47B Silent p.P297P 0.10 TCGA-BH-A0EI-01 11 224173 224173 C A SIRT3 Missense_Mutation p.V292L 0.27 deleterious(0) probably_damaging(0.939) TCGA-BH-A0EI-01 11 65819873 65819873 C T SF3B2 Silent p.P6P 0.38 TCGA-BH-A0EI-01 11 9494303 9494303 A G ZNF143 Silent p.Q64Q 0.15 TCGA-BH-A0EI-01 14 31118737 31118737 C T SCFD1 Missense_Mutation p.A206V 0.29 tolerated(0.47) benign(0.006) TCGA-BH-A0EI-01 14 62229257 62229257 G A SNAPC1 Missense_Mutation p.E27K 0.27 deleterious(0) possibly_damaging(0.815) TCGA-BH-A0EI-01 14 94933670 94933670 T A SERPINA9 Silent p.P244P 0.32 TCGA-BH-A0EI-01 16 56670842 56670842 G A MT1M 3'Flank 0.16 TCGA-BH-A0EI-01 17 12011150 12011150 A G MAP2K4 Missense_Mutation p.D186G 0.48 deleterious(0.01) probably_damaging(1) TCGA-BH-A0EI-01 17 18157896 18157896 G A FLII Missense_Mutation p.R172C 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A0EI-01 18 43422104 43422104 G T SIGLEC15 Missense_Mutation p.L313F 0.36 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-BH-A0EI-01 1 13942453 13942453 C T PDPN 3'UTR 0.34 TCGA-BH-A0EI-01 1 247473058 247473058 G A ZNF496 Missense_Mutation p.R279C 0.15 tolerated(0.14) benign(0.011) TCGA-BH-A0EI-01 1 248569440 248569440 G A OR2T1 Missense_Mutation p.V49I 0.04 tolerated(0.13) benign(0) TCGA-BH-A0EI-01 20 3559378 3559378 G C ATRN Missense_Mutation p.V835L 0.17 tolerated(0.08) benign(0.079) TCGA-BH-A0EI-01 20 39802876 39802876 G A PLCG1 Missense_Mutation p.R1253H 0.31 tolerated(0.08) possibly_damaging(0.855) TCGA-BH-A0EI-01 3 154055726 154055726 C T GPR149 Missense_Mutation p.R653H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BH-A0EI-01 5 150321847 150321847 G A ZNF300P1 RNA 0.35 TCGA-BH-A0EI-01 6 72596874 72596874 G A RIMS1 Missense_Mutation p.E50K 0.31 deleterious(0) benign(0.207) TCGA-BH-A0EI-01 8 23049438 23049439 - T TNFRSF10A Frame_Shift_Ins p.N392Kfs*2 0.39 TCGA-BH-A0EI-01 9 27950338 27950338 C T LINGO2 Missense_Mutation p.R111H 0.31 tolerated(0.11) possibly_damaging(0.616) TCGA-BH-A0EI-01 9 84530475 84530475 C T SPATA31D5P RNA 0.36 TCGA-BH-A0EI-01 X 71363337 71363337 A G NHSL2 Silent p.E1197E 0.13 TCGA-BH-A0EI-01 X 75004148 75004148 G A MAGEE2 Missense_Mutation p.L247F 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A0EI-01 X 77041637 77041637 T C ATRX 5'UTR 0.25 TCGA-BH-A0EI-01 X 86887332 86887332 G A KLHL4 Missense_Mutation p.G483R 0.29 deleterious(0) probably_damaging(1) TCGA-BH-A0H3-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.27 TCGA-BH-A0H3-01 11 47804690 47804690 C T NUP160 Missense_Mutation p.V1351M 0.22 deleterious(0.03) probably_damaging(0.91) TCGA-BH-A0H3-01 14 104206651 104206651 G A PPP1R13B Missense_Mutation p.A701V 0.23 deleterious(0) probably_damaging(0.999) TCGA-BH-A0H3-01 14 106173820 106173820 C T IGHA1 Silent p.T249T 0.38 TCGA-BH-A0H3-01 14 24910225 24910225 C T SDR39U1 Intron 0.29 TCGA-BH-A0H3-01 16 84203706 84203706 G A DNAAF1 Silent p.S424S 0.22 TCGA-BH-A0H3-01 17 16012217 16012217 T A NCOR1 Nonsense_Mutation p.K689* 0.52 TCGA-BH-A0H3-01 1 169094123 169094124 - T ATP1B1 Frame_Shift_Ins p.L77Ffs*11 0.16 TCGA-BH-A0H3-01 1 92711316 92711316 T C C1orf146 3'UTR 0.17 TCGA-BH-A0H3-01 21 36252994 36252995 - CC RUNX1 Frame_Shift_Ins p.D123Gfs*11 0.29 TCGA-BH-A0H3-01 22 38890089 38890089 G T DDX17 Missense_Mutation p.T421K 0.20 deleterious(0) probably_damaging(1) TCGA-BH-A0H3-01 2 178936669 178936669 G A PDE11A Missense_Mutation p.P166S 0.17 deleterious(0.01) possibly_damaging(0.857) TCGA-BH-A0H3-01 2 231265764 231265764 C T SP140L Missense_Mutation p.P470S 0.13 deleterious(0.03) possibly_damaging(0.868) TCGA-BH-A0H3-01 2 233759485 233759485 C T NGEF Missense_Mutation p.V324M 0.42 deleterious(0) probably_damaging(0.993) TCGA-BH-A0H3-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.15 deleterious(0.01) probably_damaging(1) TCGA-BH-A0H3-01 4 135121899 135121899 C T PABPC4L Silent p.L150L 0.31 TCGA-BH-A0H3-01 6 36181879 36181879 A G BRPF3 Missense_Mutation p.N902S 0.28 tolerated(1) benign(0.001) TCGA-BH-A0H3-01 8 28286091 28286091 G T FBXO16 3'UTR 0.22 TCGA-BH-A0H3-01 8 28385071 28385071 A G FZD3 Missense_Mutation p.N265S 0.23 deleterious(0.02) benign(0.026) TCGA-BH-A0H3-01 8 30705430 30705430 C T TEX15 Silent p.G368G 0.29 TCGA-BH-A0H5-01 10 120931965 120931965 G C PRDX3 Silent p.L160L 0.07 TCGA-BH-A0H5-01 10 49998948 49998948 A T WDFY4 Missense_Mutation p.I1415F 0.08 deleterious(0) possibly_damaging(0.482) TCGA-BH-A0H5-01 10 78839247 78839247 G A KCNMA1 Missense_Mutation p.H529Y 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A0H5-01 10 8106058 8106058 T A GATA3 Missense_Mutation p.M294K 0.06 deleterious(0) possibly_damaging(0.583) TCGA-BH-A0H5-01 10 89692905 89692905 G C PTEN Missense_Mutation p.R130P 0.12 deleterious(0) probably_damaging(0.999) TCGA-BH-A0H5-01 11 36458985 36458985 G A PRR5L Missense_Mutation p.E135K 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0H5-01 11 47317523 47317523 G A MADD Missense_Mutation p.E1226K 0.08 tolerated(0.5) benign(0.003) TCGA-BH-A0H5-01 11 47500486 47500486 G A CELF1 Nonsense_Mutation p.Q262* 0.07 TCGA-BH-A0H5-01 11 4790405 4790405 C G OR51F1 Missense_Mutation p.G248A 0.08 tolerated(0.22) benign(0.25) TCGA-BH-A0H5-01 11 6260927 6260927 G A CNGA4 Missense_Mutation p.D60N 0.06 deleterious(0) benign(0.32) TCGA-BH-A0H5-01 12 110781163 110781163 C T ATP2A2 Silent p.I815I 0.06 TCGA-BH-A0H5-01 12 118615042 118615042 C T TAOK3 Silent p.K553K 0.04 TCGA-BH-A0H5-01 12 132239997 132239997 C T SFSWAP Silent p.L507L 0.07 TCGA-BH-A0H5-01 12 133198192 133198192 C G P2RX2 Silent p.L376L 0.07 TCGA-BH-A0H5-01 12 13764692 13764692 C G GRIN2B Missense_Mutation p.V583L 0.10 tolerated(0.21) benign(0.126) TCGA-BH-A0H5-01 12 46765122 46765122 C T SLC38A2 5'UTR 0.08 TCGA-BH-A0H5-01 12 49521906 49521906 C T TUBA1B Silent p.L397L 0.07 TCGA-BH-A0H5-01 12 52943869 52943869 C T KRT71 Silent p.V200V 0.05 TCGA-BH-A0H5-01 12 78400561 78400561 G A NAV3 Missense_Mutation p.D415N 0.08 deleterious(0.02) possibly_damaging(0.794) TCGA-BH-A0H5-01 12 9301492 9301492 G C PZP 3'UTR 0.05 TCGA-BH-A0H5-01 13 32605930 32605930 G A FRY 5'UTR 0.06 TCGA-BH-A0H5-01 13 32721518 32721518 C T FRY Nonsense_Mutation p.Q427* 0.06 TCGA-BH-A0H5-01 13 45553384 45553384 C A NUFIP1 Missense_Mutation p.M225I 0.04 tolerated(0.26) benign(0.136) TCGA-BH-A0H5-01 13 50237225 50237225 G A EBPL Silent p.L116L 0.04 TCGA-BH-A0H5-01 13 51957502 51957502 C T INTS6 Silent p.V381V 0.03 TCGA-BH-A0H5-01 14 54878242 54878242 C G CDKN3 Missense_Mutation p.F78L 0.06 tolerated(1) benign(0.004) TCGA-BH-A0H5-01 14 62213735 62213735 C G HIF1A Missense_Mutation p.P829A 0.04 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 14 68265025 68265025 C T ZFYVE26 Missense_Mutation p.E652K 0.04 tolerated(0.24) benign(0.079) TCGA-BH-A0H5-01 14 94697027 94697027 C A PPP4R4 Nonsense_Mutation p.S133* 0.08 TCGA-BH-A0H5-01 15 23052719 23052719 G C NIPA1 Silent p.L118L 0.04 TCGA-BH-A0H5-01 15 40324411 40324411 G C EIF2AK4 Missense_Mutation p.Q1567H 0.04 tolerated(0.76) benign(0.013) TCGA-BH-A0H5-01 15 42984625 42984625 G A STARD9 Missense_Mutation p.E3617K 0.11 benign(0.199) TCGA-BH-A0H5-01 15 44109484 44109484 G A MFAP1 Missense_Mutation p.S81F 0.06 deleterious(0.05) possibly_damaging(0.485) TCGA-BH-A0H5-01 15 58247425 58247425 C G ALDH1A2 Silent p.V509V 0.05 TCGA-BH-A0H5-01 15 66795709 66795709 G A RPL4 Silent p.V54V 0.04 TCGA-BH-A0H5-01 15 72143629 72143629 G C MYO9A Silent p.L2182L 0.06 TCGA-BH-A0H5-01 15 72313334 72313334 G A MYO9A Silent p.L341L 0.03 TCGA-BH-A0H5-01 15 83358145 83358145 C T AP3B2 Missense_Mutation p.M58I 0.06 deleterious(0.02) possibly_damaging(0.897) TCGA-BH-A0H5-01 15 86806057 86806057 C G AGBL1 Missense_Mutation p.L294V 0.05 tolerated(0.45) benign(0.038) TCGA-BH-A0H5-01 16 27519873 27519873 G C GTF3C1 Missense_Mutation p.F410L 0.06 tolerated(0.06) benign(0.164) TCGA-BH-A0H5-01 17 11893843 11893843 C T ZNF18 Missense_Mutation p.R201Q 0.08 tolerated(0.62) benign(0.001) TCGA-BH-A0H5-01 17 13400075 13400075 G A HS3ST3A1 Silent p.F220F 0.08 TCGA-BH-A0H5-01 17 26658913 26658913 C T IFT20 Silent p.L59L 0.04 TCGA-BH-A0H5-01 17 3336794 3336794 G C OR1E2 Silent p.L114L 0.04 TCGA-BH-A0H5-01 17 33767664 33767664 G C SLFN13 Missense_Mutation p.L882V 0.04 deleterious(0.02) benign(0.279) TCGA-BH-A0H5-01 17 36709059 36709059 C T SRCIN1 Missense_Mutation p.R745K 0.05 tolerated(1) benign(0.002) TCGA-BH-A0H5-01 17 38855709 38855709 C G KRT24 Missense_Mutation p.D450H 0.04 deleterious(0.02) possibly_damaging(0.586) TCGA-BH-A0H5-01 17 46700168 46700168 G A HOXB9 3'UTR 0.03 TCGA-BH-A0H5-01 17 46894332 46894332 C T TTLL6 Missense_Mutation p.G35R 0.06 deleterious_low_confidence(0) benign(0.248) TCGA-BH-A0H5-01 17 59557513 59557513 C T TBX4 Missense_Mutation p.S285L 0.17 tolerated(0.28) benign(0.067) TCGA-BH-A0H5-01 17 6337285 6337285 G A AIPL1 Missense_Mutation p.T77I 0.09 tolerated(0.15) possibly_damaging(0.589) TCGA-BH-A0H5-01 17 65665709 65665709 C T PITPNC1 Missense_Mutation p.S183F 0.14 deleterious(0) probably_damaging(0.917) TCGA-BH-A0H5-01 17 73177229 73177229 C T SUMO2 Missense_Mutation p.D26N 0.07 deleterious(0.03) benign(0.101) TCGA-BH-A0H5-01 18 5397121 5397121 C T EPB41L3 Missense_Mutation p.R926Q 0.07 tolerated(1) benign(0.001) TCGA-BH-A0H5-01 18 56585918 56585918 C T ZNF532 Silent p.S133S 0.10 TCGA-BH-A0H5-01 18 67673622 67673622 G A RTTN Nonsense_Mutation p.Q2174* 0.07 TCGA-BH-A0H5-01 18 72343597 72343597 C T ZNF407 Missense_Mutation p.H208Y 0.06 tolerated(0.65) benign(0.346) TCGA-BH-A0H5-01 19 10565544 10565544 G C PDE4A Missense_Mutation p.E275Q 0.06 deleterious(0.01) benign(0.106) TCGA-BH-A0H5-01 19 16204497 16204497 G A TPM4 Missense_Mutation p.E236K 0.04 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 19 40433177 40433177 C T FCGBP Silent p.T364T 0.06 TCGA-BH-A0H5-01 19 46299305 46299305 G A RSPH6A Missense_Mutation p.P659L 0.09 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 19 9721148 9721148 C G ZNF561 Missense_Mutation p.E397Q 0.05 tolerated(0.28) probably_damaging(0.997) TCGA-BH-A0H5-01 1 11589701 11589701 G A PTCHD2 Missense_Mutation p.D963N 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-BH-A0H5-01 1 116275530 116275530 C G CASQ2 Missense_Mutation p.D200H 0.06 deleterious(0) probably_damaging(0.953) TCGA-BH-A0H5-01 1 116563400 116563400 C A SLC22A15 Missense_Mutation p.F164L 0.06 tolerated(0.45) benign(0.003) TCGA-BH-A0H5-01 1 12952778 12952778 G C PRAMEF10 Missense_Mutation p.S465C 0.04 tolerated(0.08) probably_damaging(0.951) TCGA-BH-A0H5-01 1 149783741 149783741 C A HIST2H2BF Silent p.L46L 0.04 TCGA-BH-A0H5-01 1 149783919 149783919 C T HIST2H2BF 5'UTR 0.07 TCGA-BH-A0H5-01 1 151752545 151752545 G A TDRKH Silent p.I101I 0.03 TCGA-BH-A0H5-01 1 152191465 152191465 G A HRNR Silent p.R880R 0.12 TCGA-BH-A0H5-01 1 152975899 152975899 G C SPRR3 Missense_Mutation p.E135Q 0.06 tolerated(0.14) benign(0.055) TCGA-BH-A0H5-01 1 154520407 154520407 T C TDRD10 3'UTR 0.35 TCGA-BH-A0H5-01 1 155001832 155001832 G A DCST2 Silent p.L407L 0.04 TCGA-BH-A0H5-01 1 156675339 156675339 C T CRABP2 5'UTR 0.10 TCGA-BH-A0H5-01 1 158299806 158299806 G A CD1B Missense_Mutation p.S148L 0.08 deleterious(0.02) benign(0.029) TCGA-BH-A0H5-01 1 159558282 159558282 G A APCS Silent p.L152L 0.03 TCGA-BH-A0H5-01 1 168513193 168513193 G A XCL2 Missense_Mutation p.L4F 0.04 tolerated(0.11) possibly_damaging(0.86) TCGA-BH-A0H5-01 1 200821684 200821684 G C CAMSAP2 Missense_Mutation p.E1161Q 0.08 deleterious(0) probably_damaging(0.993) TCGA-BH-A0H5-01 1 27106354 27106354 C T ARID1A Nonsense_Mutation p.R1989* 0.05 TCGA-BH-A0H5-01 1 33238510 33238510 C T KIAA1522 3'UTR 0.07 TCGA-BH-A0H5-01 1 3732014 3732014 C T CEP104 Silent p.P910P 0.10 TCGA-BH-A0H5-01 1 43282163 43282163 C G CCDC23 Missense_Mutation p.R18T 0.06 deleterious(0.01) benign(0.121) TCGA-BH-A0H5-01 20 2097996 2097996 G T STK35 Missense_Mutation p.R526I 0.09 deleterious(0) probably_damaging(0.979) TCGA-BH-A0H5-01 20 39976201 39976201 G C LPIN3 Missense_Mutation p.E68Q 0.05 deleterious(0) possibly_damaging(0.842) TCGA-BH-A0H5-01 20 61473415 61473415 C T TCFL5 Missense_Mutation p.R472Q 0.08 tolerated(0.07) probably_damaging(0.99) TCGA-BH-A0H5-01 21 34038299 34038299 C A SYNJ1 Missense_Mutation p.R739I 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 21 35467642 35467642 G T SLC5A3 Missense_Mutation p.V49L 0.06 tolerated(0.12) benign(0.01) TCGA-BH-A0H5-01 21 41550956 41550956 C G DSCAM Missense_Mutation p.D949H 0.06 deleterious(0.01) benign(0.067) TCGA-BH-A0H5-01 22 42166880 42166880 C G MEI1 Missense_Mutation p.S820C 0.04 deleterious(0.02) probably_damaging(0.987) TCGA-BH-A0H5-01 2 113251843 113251843 C A TTL Silent p.I120I 0.07 TCGA-BH-A0H5-01 2 179605962 179605962 C T TTN Missense_Mutation p.D4000N 0.10 TCGA-BH-A0H5-01 2 201800556 201800556 C T ORC2 Missense_Mutation p.E192K 0.04 tolerated(0.25) benign(0.007) TCGA-BH-A0H5-01 2 204161207 204161207 G A CYP20A1 Missense_Mutation p.D387N 0.03 deleterious(0.01) possibly_damaging(0.794) TCGA-BH-A0H5-01 2 210786312 210786312 G A UNC80 Missense_Mutation p.R1745Q 0.06 possibly_damaging(0.742) TCGA-BH-A0H5-01 2 32903975 32903975 C T TTC27 Silent p.L369L 0.05 TCGA-BH-A0H5-01 2 44599931 44599931 C T CAMKMT Missense_Mutation p.S72L 0.06 deleterious(0.01) benign(0.055) TCGA-BH-A0H5-01 2 64114641 64114641 C A UGP2 Missense_Mutation p.L393M 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 2 70515207 70515207 C T SNRPG Missense_Mutation p.G58E 0.04 deleterious(0) probably_damaging(0.986) TCGA-BH-A0H5-01 3 108103608 108103608 G C MYH15 Missense_Mutation p.L1873V 0.06 tolerated(0.36) benign(0.047) TCGA-BH-A0H5-01 3 123419461 123419461 C T MYLK Missense_Mutation p.D952N 0.06 deleterious(0.02) benign(0.196) TCGA-BH-A0H5-01 3 132406047 132406047 C T NPHP3 Missense_Mutation p.R1050K 0.05 tolerated(0.27) benign(0.199) TCGA-BH-A0H5-01 3 138193147 138193147 G C ESYT3 Missense_Mutation p.K807N 0.04 deleterious(0) possibly_damaging(0.805) TCGA-BH-A0H5-01 3 143567032 143567032 G C SLC9A9 Missense_Mutation p.R45G 0.06 deleterious(0) probably_damaging(0.999) TCGA-BH-A0H5-01 3 164750420 164750420 G A SI Nonsense_Mutation p.Q876* 0.03 TCGA-BH-A0H5-01 3 186572018 186572018 G C ADIPOQ Missense_Mutation p.G87A 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 3 40433518 40433518 C G ENTPD3 Silent p.L15L 0.03 TCGA-BH-A0H5-01 3 44841884 44841884 G C KIF15 Missense_Mutation p.E393Q 0.05 tolerated(1) benign(0.001) TCGA-BH-A0H5-01 3 57469158 57469158 G C DNAH12 Missense_Mutation p.S532C 0.04 deleterious(0.02) possibly_damaging(0.7) TCGA-BH-A0H5-01 3 69101211 69101211 G A TMF1 Silent p.L9L 0.09 TCGA-BH-A0H5-01 3 75790429 75790429 G C ZNF717 Nonsense_Mutation p.S92* 0.05 TCGA-BH-A0H5-01 3 95374100 95374100 G A MTHFD2P1 RNA 0.18 TCGA-BH-A0H5-01 4 109675807 109675807 C T ETNPPL Missense_Mutation p.G157E 0.08 deleterious(0.02) possibly_damaging(0.904) TCGA-BH-A0H5-01 4 119649723 119649723 G A SEC24D Missense_Mutation p.S984L 0.03 tolerated(0.51) possibly_damaging(0.617) TCGA-BH-A0H5-01 4 186295491 186295491 G C LRP2BP Nonsense_Mutation p.S152* 0.07 TCGA-BH-A0H5-01 4 44638080 44638080 G A YIPF7 Nonsense_Mutation p.Q71* 0.04 TCGA-BH-A0H5-01 4 48032182 48032182 G C NIPAL1 Missense_Mutation p.G120A 0.03 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 4 54364958 54364958 C G LNX1 Missense_Mutation p.K276N 0.05 tolerated(0.1) probably_damaging(0.923) TCGA-BH-A0H5-01 4 76943960 76943960 G C CXCL10 Silent p.L24L 0.05 TCGA-BH-A0H5-01 4 89653238 89653238 C T FAM13A Missense_Mutation p.D920N 0.06 deleterious(0) probably_damaging(0.999) TCGA-BH-A0H5-01 5 129019964 129019964 G A ADAMTS19 Missense_Mutation p.G933E 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 5 133956732 133956732 C T SAR1B Silent p.K23K 0.04 TCGA-BH-A0H5-01 5 162944562 162944562 C T MAT2B Intron 0.05 TCGA-BH-A0H5-01 5 16781929 16781929 C A MYO10 Missense_Mutation p.M204I 0.03 deleterious(0.01) benign(0.003) TCGA-BH-A0H5-01 5 36958257 36958257 C G NIPBL Silent p.V94V 0.04 TCGA-BH-A0H5-01 5 43175119 43175119 G A ZNF131 Missense_Mutation p.E552K 0.09 tolerated_low_confidence(0.15) benign(0.043) TCGA-BH-A0H5-01 5 68492916 68492916 G A CENPH Silent p.E117E 0.04 TCGA-BH-A0H5-01 6 116979992 116979992 C A ZUFSP Nonsense_Mutation p.E256* 0.06 TCGA-BH-A0H5-01 6 117630083 117630083 C T ROS1 Missense_Mutation p.G2148E 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 6 142723164 142723164 C T GPR126 Silent p.Y571Y 0.03 TCGA-BH-A0H5-01 6 149997410 149997410 C G LATS1 Missense_Mutation p.E957Q 0.04 deleterious(0.04) probably_damaging(0.913) TCGA-BH-A0H5-01 6 152804264 152804264 C T SYNE1 Missense_Mutation p.E436K 0.04 possibly_damaging(0.74) TCGA-BH-A0H5-01 6 159205723 159205723 C T EZR Nonsense_Mutation p.W168* 0.09 TCGA-BH-A0H5-01 6 161128834 161128834 G A PLG Silent p.K96K 0.03 TCGA-BH-A0H5-01 6 17783881 17783881 C G KIF13A Missense_Mutation p.L1180F 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 6 24706487 24706487 G C C6orf62 Missense_Mutation p.P190A 0.07 tolerated(0.13) benign(0.002) TCGA-BH-A0H5-01 6 26124901 26124901 C G HIST1H2AC Intron 0.05 TCGA-BH-A0H5-01 6 46802478 46802478 G A MEP1A Silent p.V591V 0.08 TCGA-BH-A0H5-01 6 70500274 70500274 G C LMBRD1 Missense_Mutation p.L54V 0.07 deleterious(0.01) probably_damaging(0.914) TCGA-BH-A0H5-01 6 71243481 71243481 G C FAM135A Missense_Mutation p.D1297H 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A0H5-01 6 82900922 82900922 G A IBTK Missense_Mutation p.S1148F 0.05 deleterious(0.05) benign(0.197) TCGA-BH-A0H5-01 7 115890530 115890530 G A TES Missense_Mutation p.E228K 0.07 tolerated(0.79) benign(0.013) TCGA-BH-A0H5-01 7 142250817 142250817 C G TRBV6-4 Missense_Mutation p.G77A 0.05 deleterious(0.03) possibly_damaging(0.862) TCGA-BH-A0H5-01 7 142636663 142636663 G A C7orf34 Missense_Mutation p.G7E 0.06 deleterious_low_confidence(0) benign(0.009) TCGA-BH-A0H5-01 7 5567787 5567787 T A ACTB Missense_Mutation p.T278S 0.05 deleterious_low_confidence(0.03) benign(0.042) TCGA-BH-A0H5-01 8 107758052 107758052 C G OXR1 Missense_Mutation p.I817M 0.06 deleterious(0.04) benign(0.403) TCGA-BH-A0H5-01 8 145154289 145154289 G A SHARPIN Silent p.V271V 0.13 TCGA-BH-A0H5-01 8 18413743 18413743 C T PSD3 Silent p.L968L 0.07 TCGA-BH-A0H5-01 8 38277223 38277223 G A FGFR1 Missense_Mutation p.S402L 0.05 deleterious(0.03) probably_damaging(0.939) TCGA-BH-A0H5-01 8 67380634 67380634 G A ADHFE1 3'UTR 0.05 TCGA-BH-A0H5-01 8 82391064 82391064 C G FABP4 3'UTR 0.04 TCGA-BH-A0H5-01 8 95543311 95543311 C G KIAA1429 Missense_Mutation p.D163H 0.08 deleterious(0.01) possibly_damaging(0.73) TCGA-BH-A0H5-01 9 101513341 101513341 C T ANKS6 Silent p.E788E 0.04 TCGA-BH-A0H5-01 9 101894994 101894994 G T TGFBR1 Missense_Mutation p.D183Y 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-BH-A0H5-01 9 114543261 114543261 G A C9orf84 Missense_Mutation p.S5L 0.06 deleterious(0.03) benign(0.039) TCGA-BH-A0H5-01 9 117139056 117139056 G A AKNA Missense_Mutation p.S344F 0.05 tolerated(0.06) probably_damaging(0.969) TCGA-BH-A0H5-01 9 123737127 123737127 G A C5 Missense_Mutation p.S1316F 0.09 deleterious(0.02) benign(0.008) TCGA-BH-A0H5-01 9 123927312 123927312 G C CNTRL Missense_Mutation p.D1839H 0.05 possibly_damaging(0.897) TCGA-BH-A0H5-01 9 129594939 129594939 C G ZBTB43 Missense_Mutation p.L51V 0.05 deleterious(0) probably_damaging(0.987) TCGA-BH-A0H5-01 9 72939057 72939057 G A SMC5 Missense_Mutation p.E799K 0.05 tolerated(0.13) benign(0.268) TCGA-BH-A0H5-01 X 105449858 105449858 C G MUM1L1 Missense_Mutation p.L145V 0.06 tolerated(0.35) benign(0.021) TCGA-BH-A0H5-01 X 135302980 135302980 C T MAP7D3 Silent p.L810L 0.04 TCGA-BH-A0H5-01 X 17070527 17070527 C T REPS2 Silent p.F310F 0.05 TCGA-BH-A0H5-01 X 24523331 24523331 C T PDK3 Silent p.L171L 0.04 TCGA-BH-A0H5-01 X 3238373 3238373 G A MXRA5 Missense_Mutation p.P1785S 0.05 deleterious(0.03) possibly_damaging(0.539) TCGA-BH-A0H5-01 X 34961414 34961414 G A FAM47B Missense_Mutation p.E156K 0.06 tolerated(0.06) probably_damaging(0.996) TCGA-BH-A0H5-01 X 36007609 36007609 G C CXorf22 Missense_Mutation p.E963Q 0.05 deleterious_low_confidence(0.03) benign(0.053) TCGA-BH-A0H5-01 X 54776540 54776540 C G ITIH6 Splice_Site p.X1244_splice 0.10 TCGA-BH-A0H5-01 X 64951727 64951727 G A MSN Silent p.K193K 0.03 TCGA-BH-A0H5-01 X 83129544 83129544 C T CYLC1 Missense_Mutation p.P610S 0.06 tolerated(0.15) possibly_damaging(0.767) TCGA-BH-A0H7-01 10 127843806 127843806 C T ADAM12 Missense_Mutation p.R110Q 0.13 tolerated(0.31) possibly_damaging(0.83) TCGA-BH-A0H7-01 10 49381051 49381051 G A FRMPD2 Missense_Mutation p.T1054M 0.15 tolerated(0.24) benign(0.002) TCGA-BH-A0H7-01 11 1268585 1268585 C T MUC5B Missense_Mutation p.S3492F 0.11 unknown(0) TCGA-BH-A0H7-01 11 6239359 6239359 T C FAM160A2 Missense_Mutation p.D500G 0.26 deleterious(0.02) possibly_damaging(0.894) TCGA-BH-A0H7-01 12 11286375 11286375 C A TAS2R30 Nonsense_Mutation p.E157* 0.09 TCGA-BH-A0H7-01 13 41333178 41333178 C G MRPS31 Missense_Mutation p.D169H 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A0H7-01 16 11852503 11852503 A G ZC3H7A Intron 0.22 TCGA-BH-A0H7-01 19 31038893 31038893 G A ZNF536 Silent p.T789T 0.42 TCGA-BH-A0H7-01 1 89401751 89401758 AAATATTT - CCBL2 3'UTR 0.37 TCGA-BH-A0H7-01 2 240960813 240960813 A G NDUFA10 Silent p.P87P 0.29 TCGA-BH-A0H7-01 2 240960814 240960814 G T NDUFA10 Missense_Mutation p.P87H 0.28 deleterious(0) probably_damaging(0.996) TCGA-BH-A0H7-01 2 73118645 73118645 C T SPR Silent p.H255H 0.21 TCGA-BH-A0H7-01 5 129520729 129520729 G A CHSY3 Missense_Mutation p.D632N 0.17 tolerated(0.08) possibly_damaging(0.809) TCGA-BH-A0H7-01 5 78742884 78742884 G C HOMER1 Missense_Mutation p.P127A 0.19 tolerated(1) benign(0.006) TCGA-BH-A0H7-01 6 26205093 26205093 C T HIST1H4E Missense_Mutation p.T74M 0.04 deleterious(0.03) possibly_damaging(0.902) TCGA-BH-A0H7-01 7 76826243 76826243 C G FGL2 Missense_Mutation p.E225Q 0.15 deleterious(0.04) possibly_damaging(0.449) TCGA-BH-A0H7-01 8 124381414 124381414 T C ATAD2 Silent p.K311K 0.14 TCGA-BH-A0H7-01 X 14627177 14627177 G C GLRA2 Missense_Mutation p.Q260H 0.29 deleterious(0.01) possibly_damaging(0.832) TCGA-BH-A0H9-01 10 105664860 105664860 T C OBFC1 Missense_Mutation p.E95G 0.17 tolerated(0.28) benign(0.297) TCGA-BH-A0H9-01 12 69260691 69260691 T C CPM Missense_Mutation p.K309E 0.08 tolerated(0.23) possibly_damaging(0.767) TCGA-BH-A0H9-01 13 33634928 33634928 A G KL Missense_Mutation p.Y571C 0.33 deleterious(0.01) possibly_damaging(0.84) TCGA-BH-A0H9-01 14 94933642 94933642 G C SERPINA9 Missense_Mutation p.H254D 0.15 deleterious(0) benign(0.046) TCGA-BH-A0H9-01 16 67964902 67964902 C T CTRL Missense_Mutation p.D53N 0.50 tolerated(0.07) benign(0.149) TCGA-BH-A0H9-01 17 29685563 29685563 A G NF1 Missense_Mutation p.N2679S 0.13 tolerated(0.27) probably_damaging(0.952) TCGA-BH-A0H9-01 18 48604941 48604941 T G SMAD4 3'UTR 0.14 TCGA-BH-A0H9-01 1 86919248 86919248 T G CLCA2 Silent p.S784S 0.19 TCGA-BH-A0H9-01 20 47601333 47601333 G A ARFGEF2 Missense_Mutation p.E676K 0.21 tolerated(0.23) benign(0.028) TCGA-BH-A0H9-01 2 103039784 103039784 G A IL18RAP Missense_Mutation p.R16Q 0.16 tolerated(0.12) benign(0.047) TCGA-BH-A0H9-01 2 107423090 107423090 C A ST6GAL2 3'UTR 0.17 TCGA-BH-A0H9-01 2 203417447 203417447 G A BMPR2 Silent p.R474R 0.36 TCGA-BH-A0H9-01 3 17052713 17052713 C A PLCL2 Nonsense_Mutation p.C499* 0.22 TCGA-BH-A0H9-01 3 178951964 178951964 G C PIK3CA Missense_Mutation p.G1007R 0.35 tolerated(0.1) possibly_damaging(0.817) TCGA-BH-A0H9-01 5 86708654 86708654 C A CCNH 5'UTR 0.27 TCGA-BH-A0H9-01 6 143093972 143093972 C A HIVEP2 Missense_Mutation p.G635V 0.28 tolerated(0.61) benign(0.11) TCGA-BH-A0H9-01 6 26406257 26406257 G C BTN3A1 Missense_Mutation p.S69T 0.21 deleterious(0) possibly_damaging(0.464) TCGA-BH-A0H9-01 7 114284895 114284895 C G FOXP2 Intron 0.37 TCGA-BH-A0H9-01 7 94540216 94540223 GAGGTGTT - PPP1R9A Frame_Shift_Del p.G265Yfs*8 0.25 TCGA-BH-A0H9-01 8 48887308 48887308 G A MCM4 Missense_Mutation p.M717I 0.19 deleterious(0.02) possibly_damaging(0.6) TCGA-BH-A0H9-01 8 82371416 82371416 T C FABP9 Missense_Mutation p.D77G 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-BH-A0H9-01 9 36643017 36643017 C T MELK Silent p.C286C 0.23 TCGA-BH-A0H9-01 X 30260727 30260727 G A MAGEB4 Missense_Mutation p.E159K 0.20 deleterious(0) probably_damaging(0.943) TCGA-BH-A0H9-01 X 47500696 47500696 G A ELK1 Missense_Mutation p.R49C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 10 104122393 104122393 A G GBF1 Missense_Mutation p.I615M 0.29 tolerated(0.27) benign(0.002) TCGA-BH-A0HA-01 10 105202191 105202191 G A PDCD11 Silent p.E1643E 0.10 TCGA-BH-A0HA-01 10 106118199 106118199 A G CCDC147 Missense_Mutation p.E37G 0.24 deleterious(0.03) benign(0.012) TCGA-BH-A0HA-01 10 117221463 117221463 T C ATRNL1 Missense_Mutation p.I1112T 0.37 deleterious(0) possibly_damaging(0.529) TCGA-BH-A0HA-01 10 123844494 123844494 G C TACC2 Missense_Mutation p.E827Q 0.10 benign(0.126) TCGA-BH-A0HA-01 10 125521407 125521407 G T CPXM2 Silent p.S586S 0.55 TCGA-BH-A0HA-01 10 15262985 15262985 G - FAM171A1 Frame_Shift_Del p.Q277Sfs*18 0.38 TCGA-BH-A0HA-01 10 18254431 18254431 T C SLC39A12 Missense_Mutation p.L188P 0.07 deleterious(0) probably_damaging(0.992) TCGA-BH-A0HA-01 10 29812920 29812920 C T SVIL Missense_Mutation p.V875M 0.30 deleterious(0.03) possibly_damaging(0.485) TCGA-BH-A0HA-01 10 30306750 30306750 A G KIAA1462 3'UTR 0.32 TCGA-BH-A0HA-01 10 30747044 30747044 G T MAP3K8 Missense_Mutation p.R302M 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0HA-01 10 37451701 37451701 T C ANKRD30A Intron 0.15 TCGA-BH-A0HA-01 10 47087852 47087852 G A NPY4R Missense_Mutation p.V357I 0.09 tolerated(0.06) benign(0.18) TCGA-BH-A0HA-01 10 49659122 49659122 C T ARHGAP22 Silent p.T366T 0.43 TCGA-BH-A0HA-01 10 50740978 50740978 T C ERCC6-PGBD3 Silent p.Q11Q 0.08 TCGA-BH-A0HA-01 10 50819070 50819070 C T SLC18A3 Missense_Mutation p.A95V 0.24 tolerated(0.31) benign(0.001) TCGA-BH-A0HA-01 10 63170069 63170072 TCAA - TMEM26 3'UTR 0.46 TCGA-BH-A0HA-01 10 74618991 74618991 C T MCU Missense_Mutation p.R93W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 10 76789124 76789124 G A KAT6B Silent p.K1514K 0.37 TCGA-BH-A0HA-01 10 93247499 93247499 G C HECTD2 Missense_Mutation p.Q385H 0.14 deleterious(0.05) benign(0.179) TCGA-BH-A0HA-01 10 97170460 97170460 G A SORBS1 Silent p.S295S 0.16 TCGA-BH-A0HA-01 10 99211936 99211936 A G ZDHHC16 Silent p.S111S 0.28 TCGA-BH-A0HA-01 11 102465418 102465418 G - MMP20 Frame_Shift_Del p.Q342Sfs*28 0.20 TCGA-BH-A0HA-01 11 102487558 102487558 T - MMP20 Frame_Shift_Del p.N120Ifs*3 0.36 TCGA-BH-A0HA-01 11 108380132 108380132 G - EXPH5 3'UTR 0.10 TCGA-BH-A0HA-01 11 1101943 1101943 T C MUC2 Silent p.A2569A 0.16 TCGA-BH-A0HA-01 11 126162826 126162826 C T TIRAP Silent p.C174C 0.14 TCGA-BH-A0HA-01 11 17122898 17122900 AAC - PIK3C2A In_Frame_Del p.L1311del 0.46 TCGA-BH-A0HA-01 11 18955816 18955816 C T MRGPRX1 Nonsense_Mutation p.W172* 0.36 TCGA-BH-A0HA-01 11 22381029 22381029 T C SLC17A6 Missense_Mutation p.Y177H 0.05 tolerated(0.18) possibly_damaging(0.895) TCGA-BH-A0HA-01 11 33640180 33640180 G A KIAA1549L Missense_Mutation p.R1497Q 0.12 tolerated(0.08) possibly_damaging(0.56) TCGA-BH-A0HA-01 11 34164994 34164994 A G NAT10 Missense_Mutation p.Y963C 0.18 deleterious(0) probably_damaging(0.954) TCGA-BH-A0HA-01 11 44069927 44069927 C G ACCSL Missense_Mutation p.S114C 0.09 tolerated(0.07) benign(0.007) TCGA-BH-A0HA-01 11 46898298 46898298 T C LRP4 Missense_Mutation p.T1121A 0.15 tolerated(0.7) benign(0.02) TCGA-BH-A0HA-01 11 55999765 55999765 C T OR5T2 Silent p.V299V 0.12 TCGA-BH-A0HA-01 11 61404625 61404625 G A RPLP0P2 RNA 0.37 TCGA-BH-A0HA-01 11 63585474 63585474 C T C11orf84 Missense_Mutation p.H109Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 11 64938932 64938932 G A SPDYC Missense_Mutation p.R54H 0.37 tolerated(0.27) benign(0.002) TCGA-BH-A0HA-01 11 66328165 66328165 C A CTSF 3'Flank 0.22 TCGA-BH-A0HA-01 11 67171808 67171808 C T TBC1D10C Silent p.G45G 0.38 TCGA-BH-A0HA-01 11 68748088 68748088 C T MRGPRD Missense_Mutation p.R123H 0.07 deleterious(0.03) possibly_damaging(0.833) TCGA-BH-A0HA-01 11 77618841 77618841 A G INTS4 Silent p.L646L 0.34 TCGA-BH-A0HA-01 11 92087001 92087001 A G FAT3 Missense_Mutation p.S575G 0.09 benign(0.001) TCGA-BH-A0HA-01 12 10078860 10078860 T C CLEC2A Missense_Mutation p.I46M 0.35 tolerated(0.22) benign(0.029) TCGA-BH-A0HA-01 12 10978282 10978282 A - TAS2R10 Frame_Shift_Del p.L196* 0.29 TCGA-BH-A0HA-01 12 111990087 111990087 T - ATXN2 Frame_Shift_Del p.R350Efs*13 0.11 TCGA-BH-A0HA-01 12 130833950 130833950 A G PIWIL1 Missense_Mutation p.K301E 0.33 deleterious(0.03) probably_damaging(0.971) TCGA-BH-A0HA-01 12 131283100 131283100 T - STX2 Frame_Shift_Del p.A253Lfs*14 0.08 TCGA-BH-A0HA-01 12 133220438 133220438 G A POLE Silent p.G1425G 0.23 TCGA-BH-A0HA-01 12 21377736 21377736 C T SLCO1B1 Missense_Mutation p.R610C 0.44 deleterious(0) probably_damaging(0.946) TCGA-BH-A0HA-01 12 25679112 25679112 G A IFLTD1 Missense_Mutation p.S240L 0.05 deleterious(0.02) benign(0.275) TCGA-BH-A0HA-01 12 2968543 2968543 C A FOXM1 Missense_Mutation p.S556I 0.26 deleterious(0.02) benign(0.361) TCGA-BH-A0HA-01 12 49934840 49934840 G A KCNH3 Missense_Mutation p.V79I 0.31 tolerated(0.22) benign(0.273) TCGA-BH-A0HA-01 12 51092970 51092970 A - DIP2B Frame_Shift_Del p.N772Ifs*5 0.15 TCGA-BH-A0HA-01 12 52818365 52818365 C - KRT75 Frame_Shift_Del p.G531Afs*52 0.39 TCGA-BH-A0HA-01 12 53848642 53848642 A G PCBP2 Missense_Mutation p.M20V 0.30 deleterious(0) probably_damaging(0.944) TCGA-BH-A0HA-01 12 57626239 57626239 A - SHMT2 Frame_Shift_Del p.T201Lfs*11 0.42 TCGA-BH-A0HA-01 12 57922459 57922459 G C MBD6 Missense_Mutation p.G944A 0.07 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-BH-A0HA-01 12 71974205 71974205 T C LGR5 Splice_Site p.X518_splice 0.10 TCGA-BH-A0HA-01 12 8276474 8276474 T C CLEC4A 5'UTR 0.11 TCGA-BH-A0HA-01 12 98850411 98850412 - G SLC9A7P1 RNA 0.10 TCGA-BH-A0HA-01 12 99640366 99640367 - T ANKS1B Frame_Shift_Ins p.S678Kfs*47 0.22 TCGA-BH-A0HA-01 13 101714459 101714459 T C NALCN Missense_Mutation p.Y1539C 0.51 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HA-01 13 114009782 114009782 G A GRTP1 Missense_Mutation p.R66W 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 13 25272825 25272825 C T ATP12A Silent p.H520H 0.18 TCGA-BH-A0HA-01 13 35685029 35685029 C T NBEA Missense_Mutation p.T639I 0.04 deleterious(0.02) probably_damaging(0.993) TCGA-BH-A0HA-01 13 53039511 53039511 T C CKAP2 Missense_Mutation p.W464R 0.03 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 13 73284242 73284242 A - MZT1 3'UTR 0.44 TCGA-BH-A0HA-01 13 78477305 78477305 T C EDNRB Missense_Mutation p.T353A 0.38 tolerated(0.14) benign(0.059) TCGA-BH-A0HA-01 13 98828674 98828674 G A RNF113B Missense_Mutation p.H273Y 0.36 deleterious(0) probably_damaging(0.991) TCGA-BH-A0HA-01 14 21944734 21944736 AGG - RAB2B In_Frame_Del p.L24del 0.47 TCGA-BH-A0HA-01 14 23844943 23844943 T C IL25 Missense_Mutation p.S130P 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 14 24532703 24532703 C - LRRC16B Frame_Shift_Del p.R983Gfs*50 0.36 TCGA-BH-A0HA-01 14 64891576 64891576 C T MTHFD1 Missense_Mutation p.A261V 0.13 tolerated(0.14) probably_damaging(0.998) TCGA-BH-A0HA-01 14 69908917 69908917 G A SLC39A9 Missense_Mutation p.V113I 0.17 tolerated(0.06) possibly_damaging(0.903) TCGA-BH-A0HA-01 14 71444749 71444749 A - PCNX Frame_Shift_Del p.K567Nfs*42 0.40 TCGA-BH-A0HA-01 14 73577641 73577641 G A RBM25 Missense_Mutation p.E599K 0.06 benign(0.292) TCGA-BH-A0HA-01 14 75577041 75577041 T C NEK9 Silent p.A324A 0.12 TCGA-BH-A0HA-01 14 76107344 76107344 G C FLVCR2 Missense_Mutation p.E428Q 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 14 77845125 77845125 T A SAMD15 Missense_Mutation p.F455Y 0.18 tolerated(0.05) benign(0.268) TCGA-BH-A0HA-01 14 90429977 90429977 A G TDP1 Silent p.G173G 0.45 TCGA-BH-A0HA-01 15 101454905 101454905 G A ALDH1A3 Splice_Site p.X489_splice 0.06 TCGA-BH-A0HA-01 15 102182699 102182699 C A TM2D3 Missense_Mutation p.G243C 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 15 39885373 39885373 C T THBS1 Silent p.R980R 0.38 TCGA-BH-A0HA-01 15 40993369 40993369 A G RAD51 Silent p.G65G 0.08 TCGA-BH-A0HA-01 15 42110267 42110267 C T MAPKBP1 Silent p.D661D 0.30 TCGA-BH-A0HA-01 15 43831723 43831723 A G PPIP5K1 Silent p.R1148R 0.15 TCGA-BH-A0HA-01 15 50526110 50526110 A G SLC27A2 Missense_Mutation p.N534S 0.11 tolerated(0.06) benign(0.017) TCGA-BH-A0HA-01 15 54025194 54025194 C T WDR72 Silent p.K51K 0.36 TCGA-BH-A0HA-01 15 66180167 66180167 C T RAB11A Nonsense_Mutation p.Q214* 0.20 TCGA-BH-A0HA-01 15 74177124 74177124 C T TBC1D21 Missense_Mutation p.R124C 0.42 tolerated(0.28) benign(0.001) TCGA-BH-A0HA-01 15 91453858 91453858 C A MAN2A2 Missense_Mutation p.H569N 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 16 16218677 16218677 A G ABCC1 Missense_Mutation p.N1208D 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-BH-A0HA-01 16 2220730 2220730 C T TRAF7 Missense_Mutation p.P116L 0.40 tolerated(0.14) benign(0.001) TCGA-BH-A0HA-01 16 28884850 28884850 G A SH2B1 Silent p.A660A 0.28 TCGA-BH-A0HA-01 16 29809769 29809769 A G KIF22 Missense_Mutation p.H114R 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A0HA-01 16 2983745 2983745 G - FLYWCH1 Frame_Shift_Del p.G427Afs*44 0.15 TCGA-BH-A0HA-01 16 30594700 30594700 C T ZNF785 Silent p.A133A 0.45 TCGA-BH-A0HA-01 16 31143790 31143790 A C PRSS8 Missense_Mutation p.V222G 0.38 deleterious(0) probably_damaging(0.972) TCGA-BH-A0HA-01 16 55579678 55579678 A - LPCAT2 Frame_Shift_Del p.N297Mfs*13 0.09 TCGA-BH-A0HA-01 16 61689460 61689460 G A CDH8 Missense_Mutation p.S607F 0.04 deleterious(0.03) possibly_damaging(0.88) TCGA-BH-A0HA-01 16 69358203 69358204 AG - VPS4A Frame_Shift_Del p.S437Lfs*10 0.32 TCGA-BH-A0HA-01 16 731505 731507 GAA - STUB1 In_Frame_Del p.K145del 0.35 TCGA-BH-A0HA-01 16 90108797 90108797 C T GAS8 Intron 0.32 TCGA-BH-A0HA-01 16 9858202 9858202 G A GRIN2A Missense_Mutation p.R1067W 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 17 12028690 12028690 T C MAP2K4 Splice_Site p.X297_splice 0.57 TCGA-BH-A0HA-01 17 18149770 18149770 G A FLII Missense_Mutation p.R1020C 0.60 deleterious(0) possibly_damaging(0.816) TCGA-BH-A0HA-01 17 30521111 30521111 A G RHOT1 Missense_Mutation p.E285G 0.34 deleterious(0) possibly_damaging(0.713) TCGA-BH-A0HA-01 17 34417421 34417421 C T CCL3 5'UTR 0.39 TCGA-BH-A0HA-01 17 34893944 34893944 C G PIGW Missense_Mutation p.H332D 0.33 tolerated(0.22) benign(0.008) TCGA-BH-A0HA-01 17 38252334 38252334 C T NR1D1 Missense_Mutation p.R204H 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 17 38643488 38643488 G - TNS4 Frame_Shift_Del p.P363Hfs*14 0.30 TCGA-BH-A0HA-01 17 39334274 39334274 G A KRTAP4-2 Missense_Mutation p.P48L 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 17 58136791 58136791 C T HEATR6 Missense_Mutation p.R572H 0.10 tolerated(0.16) benign(0.004) TCGA-BH-A0HA-01 17 58290997 58290997 C T USP32 Silent p.E683E 0.06 TCGA-BH-A0HA-01 17 71436991 71436991 C T SDK2 Missense_Mutation p.G229S 0.13 deleterious(0) probably_damaging(0.958) TCGA-BH-A0HA-01 17 74278024 74278024 C T QRICH2 Missense_Mutation p.R1229Q 0.15 tolerated(1) benign(0.001) TCGA-BH-A0HA-01 17 7491760 7491760 G - SOX15 Frame_Shift_Del p.P213Lfs*18 0.56 TCGA-BH-A0HA-01 17 80010320 80010320 T C GPS1 Silent p.C46C 0.32 TCGA-BH-A0HA-01 17 80017929 80017929 T C DUS1L Missense_Mutation p.K355E 0.12 deleterious(0.04) benign(0.119) TCGA-BH-A0HA-01 17 80895232 80895232 G A TBCD Missense_Mutation p.A1093T 0.25 tolerated(0.58) benign(0.021) TCGA-BH-A0HA-01 18 13017305 13017305 T C CEP192 Silent p.G253G 0.02 TCGA-BH-A0HA-01 18 21419894 21419894 G T LAMA3 Splice_Site p.X1112_splice 0.48 TCGA-BH-A0HA-01 18 21478962 21478962 T C LAMA3 Silent p.V1923V 0.03 TCGA-BH-A0HA-01 18 21759703 21759703 G A OSBPL1A Nonsense_Mutation p.R637* 0.40 TCGA-BH-A0HA-01 18 33234665 33234665 C T GALNT1 Silent p.T13T 0.15 TCGA-BH-A0HA-01 18 43456235 43456235 A G EPG5 Silent p.T2005T 0.03 TCGA-BH-A0HA-01 18 47803052 47803052 G A MBD1 Missense_Mutation p.T152M 0.32 deleterious(0.01) probably_damaging(0.947) TCGA-BH-A0HA-01 18 59157855 59157855 G T CDH20 Missense_Mutation p.W23C 0.24 tolerated(0.4) benign(0) TCGA-BH-A0HA-01 18 67698148 67698148 C A RTTN Missense_Mutation p.A1871S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0HA-01 18 71807443 71807443 A G FBXO15 Missense_Mutation p.L74P 0.28 deleterious(0) probably_damaging(0.913) TCGA-BH-A0HA-01 18 77895840 77895840 C T ADNP2 Silent p.H848H 0.28 TCGA-BH-A0HA-01 18 8824894 8824894 C T SOGA2 Missense_Mutation p.P1129L 0.24 deleterious(0.05) benign(0.005) TCGA-BH-A0HA-01 19 10677827 10677827 G A CDKN2D Silent p.D136D 0.37 TCGA-BH-A0HA-01 19 10692231 10692231 G A AP1M2 Missense_Mutation p.R160C 0.05 deleterious(0) possibly_damaging(0.791) TCGA-BH-A0HA-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.47 TCGA-BH-A0HA-01 19 17375140 17375140 T C USHBP1 5'UTR 0.38 TCGA-BH-A0HA-01 19 17450401 17450401 C T GTPBP3 Missense_Mutation p.R355W 0.32 deleterious(0.04) benign(0.031) TCGA-BH-A0HA-01 19 21720035 21720035 G C ZNF429 Missense_Mutation p.E394Q 0.09 deleterious(0.03) possibly_damaging(0.589) TCGA-BH-A0HA-01 19 287568 287568 C T PPAP2C Missense_Mutation p.V151I 0.12 deleterious(0.05) benign(0.413) TCGA-BH-A0HA-01 19 34891052 34891052 T C GPI 3'UTR 0.38 TCGA-BH-A0HA-01 19 36940142 36940142 T C ZNF566 Missense_Mutation p.I333V 0.03 tolerated(0.08) possibly_damaging(0.728) TCGA-BH-A0HA-01 19 4028767 4028767 G A PIAS4 Missense_Mutation p.R241H 0.11 deleterious(0.01) probably_damaging(1) TCGA-BH-A0HA-01 19 41889652 41889652 G - TMEM91 Frame_Shift_Del p.A133Qfs*28 0.31 TCGA-BH-A0HA-01 19 42509987 42509987 G A GRIK5 Silent p.Y717Y 0.11 TCGA-BH-A0HA-01 19 4280122 4280122 C A SHD Missense_Mutation p.P21H 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 19 42841287 42841289 TCT - MEGF8 In_Frame_Del p.F483del 0.23 TCGA-BH-A0HA-01 19 43025582 43025582 T C CEACAM1 Silent p.P265P 0.04 TCGA-BH-A0HA-01 19 48953639 48953639 C T GRWD1 Silent p.L180L 0.40 TCGA-BH-A0HA-01 19 49490492 49490492 C T GYS1 Missense_Mutation p.A151T 0.42 tolerated(0.27) possibly_damaging(0.504) TCGA-BH-A0HA-01 19 58904783 58904783 A G RPS5 Missense_Mutation p.T126A 0.12 tolerated(0.1) benign(0.393) TCGA-BH-A0HA-01 19 5928029 5928029 C T RANBP3 Missense_Mutation p.A255T 0.03 tolerated(0.61) benign(0.002) TCGA-BH-A0HA-01 19 6495769 6495769 G A TUBB4A Silent p.N247N 0.45 TCGA-BH-A0HA-01 19 6986335 6986335 C A EMR4P RNA 0.12 TCGA-BH-A0HA-01 19 7676815 7676815 C T CAMSAP3 Missense_Mutation p.A506V 0.44 deleterious(0.03) probably_damaging(0.942) TCGA-BH-A0HA-01 19 7805496 7805497 - A CD209 3'UTR 0.34 TCGA-BH-A0HA-01 19 7987210 7987210 C T SNAPC2 Silent p.R221R 0.10 TCGA-BH-A0HA-01 19 900926 900926 G T R3HDM4 Silent p.S126S 0.33 TCGA-BH-A0HA-01 1 112305336 112305336 T C DDX20 Missense_Mutation p.V381A 0.14 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 1 11269448 11269448 T C MTOR Missense_Mutation p.Q1241R 0.04 tolerated(0.44) benign(0.006) TCGA-BH-A0HA-01 1 11708848 11708848 C T FBXO2 Missense_Mutation p.R265H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 1 119965181 119965181 G A HSD3B2 Missense_Mutation p.V353M 0.37 tolerated(0.43) benign(0.004) TCGA-BH-A0HA-01 1 145456533 145456533 T C POLR3GL 3'UTR 0.28 TCGA-BH-A0HA-01 1 155145235 155145235 A G RP11-201K10.3 Missense_Mutation p.S114P 0.12 unknown(0) TCGA-BH-A0HA-01 1 156180034 156180034 G A SLC25A44 Missense_Mutation p.E253K 0.41 tolerated(0.06) possibly_damaging(0.622) TCGA-BH-A0HA-01 1 160012073 160012073 C T KCNJ10 Missense_Mutation p.V84M 0.34 deleterious(0.05) possibly_damaging(0.647) TCGA-BH-A0HA-01 1 161487829 161487829 A C FCGR2A Missense_Mutation p.E282A 0.11 tolerated(0.27) possibly_damaging(0.899) TCGA-BH-A0HA-01 1 169101479 169101479 G A ATP1B1 3'UTR 0.37 TCGA-BH-A0HA-01 1 182025563 182025563 C G ZNF648 Missense_Mutation p.G528A 0.08 deleterious(0.02) possibly_damaging(0.715) TCGA-BH-A0HA-01 1 183602219 183602219 T C ARPC5 Missense_Mutation p.K75E 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A0HA-01 1 185153913 185153913 A T SWT1 Missense_Mutation p.M427L 0.03 tolerated(1) benign(0.012) TCGA-BH-A0HA-01 1 196695952 196695952 C T CFH Silent p.S706S 0.11 TCGA-BH-A0HA-01 1 197072396 197072396 T C ASPM Silent p.K1995K 0.14 TCGA-BH-A0HA-01 1 201282534 201282534 C T PKP1 Missense_Mutation p.R183C 0.12 deleterious(0) possibly_damaging(0.667) TCGA-BH-A0HA-01 1 201282535 201282535 G A PKP1 Missense_Mutation p.R183H 0.33 deleterious(0.03) benign(0.008) TCGA-BH-A0HA-01 1 201965402 201965402 A G RNPEP Intron 0.03 TCGA-BH-A0HA-01 1 203452615 203452615 G A PRELP Silent p.P101P 0.35 TCGA-BH-A0HA-01 1 206611342 206611342 C T SRGAP2 Silent p.N468N 0.31 TCGA-BH-A0HA-01 1 221879619 221879619 T C DUSP10 Missense_Mutation p.E334G 0.05 tolerated(0.08) possibly_damaging(0.842) TCGA-BH-A0HA-01 1 222897497 222897497 A G BROX Silent p.K155K 0.15 TCGA-BH-A0HA-01 1 226923860 226923860 C T ITPKB Missense_Mutation p.G434R 0.44 tolerated_low_confidence(0.64) benign(0) TCGA-BH-A0HA-01 1 2319730 2319730 C T MORN1 Silent p.A65A 0.35 TCGA-BH-A0HA-01 1 236212189 236212189 G A NID1 Missense_Mutation p.A109V 0.39 tolerated(0.08) benign(0.03) TCGA-BH-A0HA-01 1 236727799 236727799 T - HEATR1 Frame_Shift_Del p.K1533Rfs*2 0.32 TCGA-BH-A0HA-01 1 248058990 248058990 G A OR2W3 Silent p.A34A 0.15 TCGA-BH-A0HA-01 1 27440699 27440699 C - SLC9A1 Frame_Shift_Del p.G144Afs*2 0.28 TCGA-BH-A0HA-01 1 32222999 32223002 GAGA - BAI2 5'UTR 0.32 TCGA-BH-A0HA-01 1 33562360 33562360 G A ADC Missense_Mutation p.G269D 0.17 deleterious(0.02) benign(0.301) TCGA-BH-A0HA-01 1 33745989 33745989 C T ZNF362 Missense_Mutation p.P205L 0.38 tolerated(0.42) possibly_damaging(0.632) TCGA-BH-A0HA-01 1 35250494 35250495 GG - GJB3 Frame_Shift_Del p.D46* 0.47 TCGA-BH-A0HA-01 1 40228838 40228838 A G BMP8B Missense_Mutation p.Y329H 0.40 deleterious(0) probably_damaging(0.932) TCGA-BH-A0HA-01 1 44069494 44069494 C T PTPRF Missense_Mutation p.R891W 0.44 tolerated(0.06) possibly_damaging(0.893) TCGA-BH-A0HA-01 1 45469597 45469597 G A HECTD3 Missense_Mutation p.R787C 0.44 deleterious(0.02) possibly_damaging(0.705) TCGA-BH-A0HA-01 1 6181297 6181297 C T CHD5 Missense_Mutation p.A1594T 0.14 tolerated_low_confidence(0.4) benign(0) TCGA-BH-A0HA-01 1 62672476 62672476 T A L1TD1 Missense_Mutation p.M59K 0.18 tolerated(0.12) unknown(0) TCGA-BH-A0HA-01 1 6610529 6610529 G A NOL9 Silent p.Y181Y 0.37 TCGA-BH-A0HA-01 1 78272735 78272735 A T FAM73A Missense_Mutation p.I196F 0.34 tolerated(0.29) benign(0.228) TCGA-BH-A0HA-01 1 92852707 92852707 A G RPAP2 3'UTR 0.16 TCGA-BH-A0HA-01 1 93705414 93705414 A - CCDC18 Frame_Shift_Del p.K1035Nfs*5 0.10 TCGA-BH-A0HA-01 1 94668215 94668216 TT - ARHGAP29 Frame_Shift_Del p.K343Vfs*44 0.19 TCGA-BH-A0HA-01 20 14307596 14307596 C T FLRT3 Missense_Mutation p.R186H 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 20 19915793 19915793 G A RIN2 Silent p.V85V 0.35 TCGA-BH-A0HA-01 20 20003100 20003100 T C NAA20 Silent p.I18I 0.13 TCGA-BH-A0HA-01 20 21284025 21284025 C T XRN2 5'UTR 0.19 TCGA-BH-A0HA-01 20 29623144 29623144 T C FRG1B 5'UTR 0.03 TCGA-BH-A0HA-01 20 3356874 3356874 T C C20orf194 Missense_Mutation p.Y120C 0.06 deleterious(0.01) benign(0.017) TCGA-BH-A0HA-01 20 35467640 35467640 C A SOGA1 Missense_Mutation p.G298C 0.22 deleterious(0.01) probably_damaging(0.917) TCGA-BH-A0HA-01 20 49508350 49508350 G A ADNP Silent p.D967D 0.17 TCGA-BH-A0HA-01 20 50400983 50400983 C - SALL4 Frame_Shift_Del p.V995Ffs*14 0.43 TCGA-BH-A0HA-01 20 53208205 53208205 G A DOK5 Missense_Mutation p.E154K 0.03 deleterious(0.01) possibly_damaging(0.645) TCGA-BH-A0HA-01 20 61869314 61869314 G A BIRC7 Missense_Mutation p.G137R 0.40 deleterious(0.04) probably_damaging(0.944) TCGA-BH-A0HA-01 20 62120320 62120320 C T EEF1A2 Silent p.V405V 0.14 TCGA-BH-A0HA-01 21 30411428 30411428 A - USP16 Frame_Shift_Del p.K273Rfs*4 0.33 TCGA-BH-A0HA-01 21 43239961 43239961 T C PRDM15 Missense_Mutation p.Y1112C 0.08 deleterious(0) probably_damaging(0.984) TCGA-BH-A0HA-01 21 44482467 44482467 C T CBS Silent p.A331A 0.11 TCGA-BH-A0HA-01 21 45222236 45222236 A C RRP1 Missense_Mutation p.Q364P 0.07 tolerated(0.28) benign(0.091) TCGA-BH-A0HA-01 21 46310051 46310051 T C ITGB2 Missense_Mutation p.D500G 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A0HA-01 21 47663439 47663439 C T MCM3AP Missense_Mutation p.A1746T 0.26 tolerated(0.26) benign(0.008) TCGA-BH-A0HA-01 22 16287406 16287406 G A POTEH Silent p.Y160Y 0.17 TCGA-BH-A0HA-01 22 19903309 19903309 G A TXNRD2 Silent p.G169G 0.59 TCGA-BH-A0HA-01 22 21242155 21242155 A - SNAP29 3'UTR 0.35 TCGA-BH-A0HA-01 22 22326278 22326278 C T TOP3B Missense_Mutation p.D119N 0.61 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 22 24621312 24621312 T C GGT5 Silent p.P469P 0.54 TCGA-BH-A0HA-01 22 31501210 31501210 C T SELM Missense_Mutation p.R88H 0.63 tolerated(0.53) benign(0.042) TCGA-BH-A0HA-01 22 31658675 31658675 C T LIMK2 Missense_Mutation p.A230V 0.15 tolerated(0.09) benign(0.065) TCGA-BH-A0HA-01 22 37578518 37578518 A G C1QTNF6 Missense_Mutation p.F183L 0.67 deleterious(0) probably_damaging(0.997) TCGA-BH-A0HA-01 22 40043828 40043828 T C CACNA1I Silent p.H488H 0.58 TCGA-BH-A0HA-01 22 47274614 47274614 C T TBC1D22A Missense_Mutation p.L235F 0.04 deleterious(0) benign(0.277) TCGA-BH-A0HA-01 22 50644927 50644927 C T SELO Missense_Mutation p.R246C 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A0HA-01 22 50727190 50727190 G A PLXNB2 Silent p.Y454Y 0.32 TCGA-BH-A0HA-01 22 50906253 50906253 C T SBF1 Missense_Mutation p.A81T 0.39 deleterious(0) possibly_damaging(0.754) TCGA-BH-A0HA-01 2 112560009 112560009 A G ANAPC1 Missense_Mutation p.L1406P 0.42 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HA-01 2 114257228 114257228 G A FOXD4L1 Missense_Mutation p.G132D 0.33 deleterious(0.01) possibly_damaging(0.896) TCGA-BH-A0HA-01 2 127816724 127816724 C T BIN1 Missense_Mutation p.A289T 0.10 tolerated(0.48) benign(0.001) TCGA-BH-A0HA-01 2 136558374 136558374 A T LCT Missense_Mutation p.S1557T 0.13 tolerated(0.08) benign(0.213) TCGA-BH-A0HA-01 2 1440158 1440158 T C TPO Splice_Site p.X161_splice 0.11 TCGA-BH-A0HA-01 2 1488427 1488427 C T TPO Silent p.Y466Y 0.05 TCGA-BH-A0HA-01 2 160092412 160092413 - T WDSUB1 3'UTR 0.27 TCGA-BH-A0HA-01 2 165996102 165996102 G A SCN3A Missense_Mutation p.T679M 0.36 tolerated(0.13) possibly_damaging(0.679) TCGA-BH-A0HA-01 2 178481860 178481860 T C TTC30A Missense_Mutation p.I524V 0.36 tolerated(0.4) benign(0.016) TCGA-BH-A0HA-01 2 179430671 179430671 A G TTN Missense_Mutation p.Y26730H 0.33 TCGA-BH-A0HA-01 2 179476178 179476178 C T TTN Silent p.L16926L 0.06 TCGA-BH-A0HA-01 2 201438018 201438019 - A SGOL2 Frame_Shift_Ins p.R986Tfs*2 0.33 TCGA-BH-A0HA-01 2 207527867 207527867 C T DYTN Missense_Mutation p.A465T 0.17 tolerated(0.38) benign(0.035) TCGA-BH-A0HA-01 2 21233835 21233835 T C APOB Missense_Mutation p.S1969G 0.09 benign(0.003) TCGA-BH-A0HA-01 2 215807683 215807683 G C ABCA12 Missense_Mutation p.Q2468E 0.06 deleterious(0.01) benign(0.297) TCGA-BH-A0HA-01 2 219211461 219211461 C T PNKD 3'UTR 0.03 TCGA-BH-A0HA-01 2 225750871 225750871 C - DOCK10 Frame_Shift_Del p.G174Vfs*24 0.33 TCGA-BH-A0HA-01 2 228116077 228116077 G C COL4A3 Missense_Mutation p.R212T 0.02 benign(0.198) TCGA-BH-A0HA-01 2 233431606 233431606 G T EIF4E2 Missense_Mutation p.W148L 0.10 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 2 238449146 238449146 A G MLPH Silent p.S420S 0.44 TCGA-BH-A0HA-01 2 37507071 37507071 T C PRKD3 Silent p.E330E 0.38 TCGA-BH-A0HA-01 2 46607728 46607728 G A EPAS1 Nonsense_Mutation p.W639* 0.17 TCGA-BH-A0HA-01 2 50758375 50758375 C T NRXN1 Silent p.T819T 0.30 TCGA-BH-A0HA-01 2 74593377 74593377 G - DCTN1 Frame_Shift_Del p.S919Afs*25 0.23 TCGA-BH-A0HA-01 2 74761116 74761116 A T LOXL3 Missense_Mutation p.V694D 0.16 tolerated(0.07) possibly_damaging(0.863) TCGA-BH-A0HA-01 2 9570133 9570135 CTC - CPSF3 In_Frame_Del p.L68del 0.15 TCGA-BH-A0HA-01 2 97868069 97868069 C T ANKRD36 Silent p.D966D 0.22 TCGA-BH-A0HA-01 2 99812092 99812092 C T MRPL30 Missense_Mutation p.T137M 0.08 deleterious(0.02) benign(0.036) TCGA-BH-A0HA-01 2 99858889 99858889 C T LYG2 Missense_Mutation p.D193N 0.25 tolerated(0.08) possibly_damaging(0.64) TCGA-BH-A0HA-01 3 100992437 100992439 TTC - IMPG2 In_Frame_Del p.E272del 0.48 TCGA-BH-A0HA-01 3 108129537 108129537 T C MYH15 Missense_Mutation p.Q1483R 0.39 deleterious(0.02) benign(0.024) TCGA-BH-A0HA-01 3 108189615 108189615 G A MYH15 Missense_Mutation p.A458V 0.31 tolerated(0.15) benign(0.007) TCGA-BH-A0HA-01 3 123010174 123010174 C T ADCY5 Missense_Mutation p.R1038Q 0.33 deleterious(0.01) possibly_damaging(0.86) TCGA-BH-A0HA-01 3 128525251 128525251 C G RAB7A Missense_Mutation p.L73V 0.07 deleterious(0.02) probably_damaging(0.968) TCGA-BH-A0HA-01 3 130380867 130380867 T - COL6A6 Frame_Shift_Del p.L2074* 0.31 TCGA-BH-A0HA-01 3 150917025 150917025 C T GPR171 Missense_Mutation p.S50N 0.04 tolerated(0.35) benign(0.291) TCGA-BH-A0HA-01 3 151150682 151150682 T - MED12L 3'UTR 0.27 TCGA-BH-A0HA-01 3 154055493 154055493 T C GPR149 Missense_Mutation p.S731G 0.02 deleterious(0.01) benign(0.025) TCGA-BH-A0HA-01 3 160131390 160131390 A G SMC4 Silent p.K370K 0.32 TCGA-BH-A0HA-01 3 171431831 171431831 A G PLD1 Silent p.L255L 0.34 TCGA-BH-A0HA-01 3 174814770 174814770 G A NAALADL2 Silent p.E78E 0.06 TCGA-BH-A0HA-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.37 TCGA-BH-A0HA-01 3 183954187 183954187 C T VWA5B2 Silent p.P423P 0.44 TCGA-BH-A0HA-01 3 185198195 185198195 C T MAP3K13 Missense_Mutation p.P893S 0.07 tolerated_low_confidence(0.64) probably_damaging(0.999) TCGA-BH-A0HA-01 3 193183869 193183869 A G ATP13A4 Missense_Mutation p.V406A 0.39 tolerated(0.45) possibly_damaging(0.66) TCGA-BH-A0HA-01 3 32032011 32032011 A G ZNF860 Silent p.K480K 0.04 TCGA-BH-A0HA-01 3 35750549 35750549 T C ARPP21 Intron 0.09 TCGA-BH-A0HA-01 3 37042542 37042542 G T MLH1 Nonsense_Mutation p.E102* 0.53 TCGA-BH-A0HA-01 3 47455704 47455704 C T SCAP Missense_Mutation p.R1187H 0.04 deleterious(0) probably_damaging(0.97) TCGA-BH-A0HA-01 3 49049490 49049490 A G WDR6 Missense_Mutation p.I205V 0.55 tolerated(0.36) benign(0.002) TCGA-BH-A0HA-01 3 49053683 49053684 GT - DALRD3 Frame_Shift_Del p.F414* 0.39 TCGA-BH-A0HA-01 3 51697169 51697169 A G RAD54L2 Silent p.L1379L 0.08 TCGA-BH-A0HA-01 3 52257017 52257017 C - TLR9 Frame_Shift_Del p.E593Rfs*47 0.50 TCGA-BH-A0HA-01 3 52440905 52440905 T C BAP1 Missense_Mutation p.E200G 0.52 deleterious(0.02) probably_damaging(0.995) TCGA-BH-A0HA-01 3 54952776 54952776 C T LRTM1 Missense_Mutation p.A250T 0.61 tolerated(0.54) benign(0.001) TCGA-BH-A0HA-01 3 55108357 55108357 C G CACNA2D3 3'UTR 0.15 TCGA-BH-A0HA-01 3 56667416 56667416 C T FAM208A Missense_Mutation p.E1135K 0.27 tolerated(0.08) possibly_damaging(0.46) TCGA-BH-A0HA-01 3 95374367 95374367 T C MTHFD2P1 RNA 0.11 TCGA-BH-A0HA-01 4 1017614 1017614 G A FGFRL1 Missense_Mutation p.R148H 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-BH-A0HA-01 4 104061559 104061559 G A CENPE Nonsense_Mutation p.Q1923* 0.03 TCGA-BH-A0HA-01 4 104096015 104096015 T C CENPE Missense_Mutation p.N509D 0.13 benign(0.038) TCGA-BH-A0HA-01 4 110442315 110442315 A G SEC24B Missense_Mutation p.Y763C 0.34 tolerated(0.06) benign(0.004) TCGA-BH-A0HA-01 4 119745855 119745855 C T SEC24D Missense_Mutation p.M56I 0.45 tolerated_low_confidence(0.39) benign(0) TCGA-BH-A0HA-01 4 126328048 126328048 T C FAT4 Missense_Mutation p.L1774P 0.04 probably_damaging(0.969) TCGA-BH-A0HA-01 4 126336577 126336577 C G FAT4 Missense_Mutation p.I2153M 0.05 benign(0.092) TCGA-BH-A0HA-01 4 1389289 1389289 C T CRIPAK Silent p.P330P 0.32 TCGA-BH-A0HA-01 4 140640648 140640648 T C MAML3 Silent p.Q1082Q 0.44 TCGA-BH-A0HA-01 4 170315569 170315569 A T NEK1 3'UTR 0.33 TCGA-BH-A0HA-01 4 175897313 175897313 C T ADAM29 Missense_Mutation p.R213C 0.35 deleterious(0) probably_damaging(0.915) TCGA-BH-A0HA-01 4 1821128 1821130 CTT - LETM1 In_Frame_Del p.K560del 0.17 TCGA-BH-A0HA-01 4 183714372 183714372 C T TENM3 Nonsense_Mutation p.R2183* 0.41 TCGA-BH-A0HA-01 4 186284682 186284682 T - SNX25 3'UTR 0.28 TCGA-BH-A0HA-01 4 25675985 25675985 C A SLC34A2 Missense_Mutation p.F428L 0.10 tolerated(0.06) possibly_damaging(0.737) TCGA-BH-A0HA-01 4 3451048 3451048 C T HGFAC Missense_Mutation p.R624W 0.35 deleterious(0) probably_damaging(0.985) TCGA-BH-A0HA-01 4 42065022 42065022 C T SLC30A9 Missense_Mutation p.R306C 0.34 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 4 57896449 57896452 TTGT - POLR2B Frame_Shift_Del p.F1108Rfs*16 0.44 TCGA-BH-A0HA-01 4 5830501 5830501 T - EVC 3'UTR 0.39 TCGA-BH-A0HA-01 4 660344 660344 G A PDE6B Missense_Mutation p.A765T 0.13 tolerated(0.08) possibly_damaging(0.845) TCGA-BH-A0HA-01 4 68547834 68547834 T C UBA6 Intron 0.37 TCGA-BH-A0HA-01 4 68925078 68925078 G A TMPRSS11F Missense_Mutation p.A375V 0.13 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HA-01 4 70350946 70350946 C T UGT2B4 Silent p.K430K 0.36 TCGA-BH-A0HA-01 4 9828107 9828107 C T SLC2A9 Missense_Mutation p.A513T 0.35 tolerated(0.25) possibly_damaging(0.595) TCGA-BH-A0HA-01 5 10239163 10239163 T - FAM173B Intron 0.12 TCGA-BH-A0HA-01 5 1033615 1033615 G A NKD2 Splice_Site p.X110_splice 0.21 TCGA-BH-A0HA-01 5 108714506 108714506 C T PJA2 Missense_Mutation p.D228N 0.03 tolerated(0.06) benign(0.008) TCGA-BH-A0HA-01 5 112175041 112175041 A C APC Missense_Mutation p.K1250N 0.41 probably_damaging(0.998) TCGA-BH-A0HA-01 5 134235522 134235522 A - TXNDC15 3'UTR 0.31 TCGA-BH-A0HA-01 5 136314398 136314398 T C SPOCK1 Missense_Mutation p.E422G 0.07 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-BH-A0HA-01 5 13871098 13871098 G A DNAH5 Silent p.F1204F 0.37 TCGA-BH-A0HA-01 5 140536655 140536655 A G PCDHB17 Missense_Mutation p.N360S 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BH-A0HA-01 5 140724340 140724340 A G PCDHGA3 Missense_Mutation p.Y247C 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-BH-A0HA-01 5 140799608 140799608 G C PCDHGB7 Missense_Mutation p.E728Q 0.10 tolerated(1) benign(0) TCGA-BH-A0HA-01 5 145524251 145524251 C T LARS Missense_Mutation p.E509K 0.08 deleterious(0) probably_damaging(0.996) TCGA-BH-A0HA-01 5 179260660 179260660 C T SQSTM1 Missense_Mutation p.P348L 0.42 deleterious(0) probably_damaging(0.994) TCGA-BH-A0HA-01 5 180001069 180001069 G A CNOT6 Missense_Mutation p.V515I 0.06 tolerated(0.19) benign(0.002) TCGA-BH-A0HA-01 5 35955790 35955790 C T UGT3A1 Missense_Mutation p.D418N 0.19 deleterious(0.03) benign(0.22) TCGA-BH-A0HA-01 5 36961670 36961670 C T NIPBL Missense_Mutation p.S148L 0.03 deleterious(0.04) benign(0.049) TCGA-BH-A0HA-01 5 38991089 38991089 C G RICTOR Missense_Mutation p.R182T 0.08 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HA-01 5 5242243 5242243 T A ADAMTS16 Silent p.P867P 0.42 TCGA-BH-A0HA-01 5 5465333 5465333 A - KIAA0947 Frame_Shift_Del p.K1964Sfs*3 0.31 TCGA-BH-A0HA-01 5 74973684 74973684 T - POC5 Frame_Shift_Del p.N500Ifs*7 0.38 TCGA-BH-A0HA-01 5 79797660 79797660 T C FAM151B Silent p.I25I 0.25 TCGA-BH-A0HA-01 5 80554943 80554943 A G CKMT2 Missense_Mutation p.E295G 0.32 deleterious(0.01) probably_damaging(1) TCGA-BH-A0HA-01 5 96101008 96101008 A G CAST Silent p.K631K 0.28 TCGA-BH-A0HA-01 6 112460392 112460392 T C LAMA4 Missense_Mutation p.Q1071R 0.06 tolerated(0.09) probably_damaging(0.995) TCGA-BH-A0HA-01 6 117248313 117248313 C A RFX6 Missense_Mutation p.P670Q 0.24 tolerated_low_confidence(0.06) benign(0.014) TCGA-BH-A0HA-01 6 131923494 131923495 TA - MED23 Frame_Shift_Del p.I653Nfs*5 0.42 TCGA-BH-A0HA-01 6 143095539 143095539 T C HIVEP2 Missense_Mutation p.T113A 0.15 tolerated(1) benign(0) TCGA-BH-A0HA-01 6 144179065 144179065 G A LTV1 Missense_Mutation p.R239H 0.20 deleterious(0) probably_damaging(0.984) TCGA-BH-A0HA-01 6 144872140 144872140 G A UTRN Missense_Mutation p.D2284N 0.04 tolerated(0.05) probably_damaging(0.975) TCGA-BH-A0HA-01 6 150715323 150715323 A - IYD Frame_Shift_Del p.V209Sfs*17 0.40 TCGA-BH-A0HA-01 6 24502792 24502792 A G ALDH5A1 Missense_Mutation p.I132M 0.38 tolerated(1) benign(0.008) TCGA-BH-A0HA-01 6 26225808 26225808 A G HIST1H3E 3'UTR 0.21 TCGA-BH-A0HA-01 6 26409872 26409872 A - BTN3A1 Frame_Shift_Del p.K278Rfs*13 0.23 TCGA-BH-A0HA-01 6 26468547 26468547 G A BTN2A1 Missense_Mutation p.V452I 0.39 tolerated(0.84) benign(0.08) TCGA-BH-A0HA-01 6 28200807 28200807 A G ZSCAN9 Missense_Mutation p.S397G 0.05 tolerated(0.05) benign(0.066) TCGA-BH-A0HA-01 6 31691426 31691426 C T C6orf25 Silent p.D24D 0.50 TCGA-BH-A0HA-01 6 3267886 3267886 C T PSMG4 Silent p.F143F 0.05 TCGA-BH-A0HA-01 6 33235071 33235071 C T VPS52 Missense_Mutation p.S340N 0.14 tolerated(1) benign(0.004) TCGA-BH-A0HA-01 6 35715084 35715084 C T ARMC12 Missense_Mutation p.T191M 0.32 deleterious(0.05) benign(0.016) TCGA-BH-A0HA-01 6 35837651 35837651 T C SRPK1 Missense_Mutation p.Q340R 0.07 tolerated(0.47) benign(0.001) TCGA-BH-A0HA-01 6 36978804 36978804 C T FGD2 Missense_Mutation p.A119V 0.13 tolerated(0.07) possibly_damaging(0.629) TCGA-BH-A0HA-01 6 42141293 42141293 C T GUCA1A 5'UTR 0.25 TCGA-BH-A0HA-01 6 42797791 42797791 C T GLTSCR1L Missense_Mutation p.P574S 0.12 tolerated(0.41) benign(0.108) TCGA-BH-A0HA-01 6 43005511 43005511 A G CUL7 Missense_Mutation p.L1755P 0.34 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-BH-A0HA-01 6 46107649 46107650 - T ENPP4 Frame_Shift_Ins p.W112Lfs*4 0.35 TCGA-BH-A0HA-01 6 56495093 56495095 CTT - DST In_Frame_Del p.E873del 0.35 TCGA-BH-A0HA-01 6 56504260 56504260 T - DST Frame_Shift_Del p.D413Ifs*6 0.09 TCGA-BH-A0HA-01 6 83904358 83904358 T C RWDD2A Missense_Mutation p.I63T 0.11 tolerated(0.07) probably_damaging(0.962) TCGA-BH-A0HA-01 6 91226079 91226079 A - MAP3K7 3'UTR 0.60 TCGA-BH-A0HA-01 6 9897162 9897162 A G OFCC1 Intron 0.29 TCGA-BH-A0HA-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.38 TCGA-BH-A0HA-01 7 106836466 106836466 A - HBP1 Frame_Shift_Del p.N420Tfs*7 0.13 TCGA-BH-A0HA-01 7 128488091 128488091 G A FLNC Missense_Mutation p.V1517I 0.43 tolerated(0.28) probably_damaging(0.998) TCGA-BH-A0HA-01 7 138758662 138758662 G A ZC3HAV1 Silent p.T604T 0.03 TCGA-BH-A0HA-01 7 140125717 140125717 C T RAB19 Silent p.L141L 0.05 TCGA-BH-A0HA-01 7 148480909 148480909 T C CUL1 Missense_Mutation p.V373A 0.03 deleterious(0.03) probably_damaging(0.955) TCGA-BH-A0HA-01 7 148769157 148769157 A G ZNF786 Missense_Mutation p.V236A 0.38 tolerated(0.84) benign(0) TCGA-BH-A0HA-01 7 148921569 148921569 A G ZNF282 Missense_Mutation p.N616D 0.39 tolerated(0.39) benign(0.01) TCGA-BH-A0HA-01 7 151699798 151699798 G A GALNTL5 Splice_Site p.X220_splice 0.29 TCGA-BH-A0HA-01 7 151805352 151805352 G T GALNT11 Missense_Mutation p.E314D 0.23 tolerated(0.29) benign(0.003) TCGA-BH-A0HA-01 7 156436576 156436577 - A RNF32 Frame_Shift_Ins p.N4Kfs*2 0.12 TCGA-BH-A0HA-01 7 157009636 157009636 T C UBE3C Missense_Mutation p.S629P 0.12 deleterious(0) probably_damaging(0.961) TCGA-BH-A0HA-01 7 16736618 16736618 A G BZW2 Missense_Mutation p.I301V 0.04 tolerated(1) benign(0) TCGA-BH-A0HA-01 7 19035834 19035834 T C HDAC9 3'Flank 0.44 TCGA-BH-A0HA-01 7 23145676 23145678 AAG - KLHL7 In_Frame_Del p.K13del 0.37 TCGA-BH-A0HA-01 7 33044891 33044891 G A FKBP9 Silent p.R547R 0.10 TCGA-BH-A0HA-01 7 43982473 43982473 G A UBE2D4 Intron 0.06 TCGA-BH-A0HA-01 7 72730631 72730632 - T TRIM50 Frame_Shift_Ins p.P270Afs*7 0.20 TCGA-BH-A0HA-01 7 72849076 72849076 G A FZD9 Missense_Mutation p.A247T 0.31 tolerated(0.37) probably_damaging(0.997) TCGA-BH-A0HA-01 7 76126704 76126704 C T DTX2 Missense_Mutation p.R354C 0.26 tolerated(0.14) benign(0.002) TCGA-BH-A0HA-01 7 86468223 86468223 C T GRM3 Nonsense_Mutation p.R465* 0.27 TCGA-BH-A0HA-01 7 86998781 86998781 A G CROT Missense_Mutation p.T241A 0.38 deleterious(0) probably_damaging(0.926) TCGA-BH-A0HA-01 7 91570325 91570325 G A AKAP9 5'UTR 0.42 TCGA-BH-A0HA-01 7 98991736 98991736 T C ARPC1B Silent p.D358D 0.27 TCGA-BH-A0HA-01 7 99704464 99704464 C T AP4M1 Nonsense_Mutation p.R441* 0.23 TCGA-BH-A0HA-01 8 10470757 10470757 G - RP1L1 Frame_Shift_Del p.P284Rfs*26 0.32 TCGA-BH-A0HA-01 8 109796495 109796495 A G TMEM74 Missense_Mutation p.F278S 0.33 deleterious(0) probably_damaging(0.994) TCGA-BH-A0HA-01 8 125464547 125464547 C T TRMT12 3'UTR 0.35 TCGA-BH-A0HA-01 8 133906121 133906121 C T TG Missense_Mutation p.A983V 0.04 deleterious(0.04) benign(0.003) TCGA-BH-A0HA-01 8 134237699 134237699 G A WISP1 Missense_Mutation p.C226Y 0.42 deleterious(0) probably_damaging(0.949) TCGA-BH-A0HA-01 8 21844747 21844747 G A XPO7 Missense_Mutation p.R558H 0.11 deleterious(0) probably_damaging(0.991) TCGA-BH-A0HA-01 8 26149328 26149328 A G PPP2R2A 5'Flank 0.12 TCGA-BH-A0HA-01 8 2815319 2815319 G A CSMD1 Missense_Mutation p.T3238M 0.15 benign(0.092) TCGA-BH-A0HA-01 8 29990074 29990074 T C MBOAT4 Silent p.G231G 0.10 TCGA-BH-A0HA-01 8 33318928 33318928 A G FUT10 Missense_Mutation p.C15R 0.32 deleterious(0.03) benign(0.076) TCGA-BH-A0HA-01 8 41397268 41397268 G A GINS4 Silent p.S123S 0.10 TCGA-BH-A0HA-01 8 42295045 42295045 C T SLC20A2 Missense_Mutation p.G329S 0.41 tolerated(0.14) probably_damaging(0.96) TCGA-BH-A0HA-01 8 49987976 49987976 G A C8orf22 3'UTR 0.20 TCGA-BH-A0HA-01 8 77896091 77896091 A G PEX2 Silent p.V108V 0.38 TCGA-BH-A0HA-01 8 81431533 81431533 A T ZBTB10 Nonsense_Mutation p.R796* 0.09 TCGA-BH-A0HA-01 8 8234762 8234762 C T SGK223 Missense_Mutation p.S386N 0.21 benign(0.003) TCGA-BH-A0HA-01 8 88885440 88885440 G A DCAF4L2 Missense_Mutation p.R254C 0.34 deleterious(0) probably_damaging(0.991) TCGA-BH-A0HA-01 8 95869179 95869179 C T INTS8 Nonsense_Mutation p.R643* 0.41 TCGA-BH-A0HA-01 9 115936859 115936859 A G FKBP15 Missense_Mutation p.L743P 0.16 deleterious(0) probably_damaging(0.99) TCGA-BH-A0HA-01 9 119460577 119460577 C T TRIM32 Nonsense_Mutation p.Q186* 0.40 TCGA-BH-A0HA-01 9 125329941 125329941 G A OR1L8 Silent p.H272H 0.05 TCGA-BH-A0HA-01 9 131115028 131115028 T C SLC27A4 Splice_Site p.X329_splice 0.19 TCGA-BH-A0HA-01 9 131864323 131864323 T C CRAT Missense_Mutation p.D215G 0.19 tolerated(0.06) benign(0.236) TCGA-BH-A0HA-01 9 139243205 139243206 CT - GPSM1 Frame_Shift_Del p.L422Pfs*40 0.37 TCGA-BH-A0HA-01 9 140006430 140006430 A G DPP7 Missense_Mutation p.F368L 0.31 deleterious(0) probably_damaging(0.969) TCGA-BH-A0HA-01 9 18775842 18775842 G A ADAMTSL1 Silent p.P833P 0.37 TCGA-BH-A0HA-01 9 19450513 19450513 C T ACER2 Missense_Mutation p.S236L 0.08 tolerated(0.16) benign(0.315) TCGA-BH-A0HA-01 9 21216922 21216922 C T IFNA16 Missense_Mutation p.G128E 0.29 tolerated(0.22) benign(0.04) TCGA-BH-A0HA-01 9 34833018 34833018 C T FAM205B RNA 0.13 TCGA-BH-A0HA-01 9 35792578 35792578 G A NPR2 Missense_Mutation p.R58Q 0.27 tolerated(0.23) benign(0.041) TCGA-BH-A0HA-01 9 36170539 36170539 G A CCIN Missense_Mutation p.R347Q 0.08 deleterious(0.04) possibly_damaging(0.878) TCGA-BH-A0HA-01 9 5029787 5029787 C T JAK2 Silent p.I77I 0.10 TCGA-BH-A0HA-01 9 5969043 5969043 T - KIAA2026 Frame_Shift_Del p.K396Nfs*117 0.25 TCGA-BH-A0HA-01 9 711613 711613 A G KANK1 Missense_Mutation p.T283A 0.08 tolerated(0.09) probably_damaging(0.935) TCGA-BH-A0HA-01 9 79319782 79319782 G A PRUNE2 Missense_Mutation p.P2470S 0.37 tolerated(0.09) benign(0.209) TCGA-BH-A0HA-01 9 88938113 88938113 T C ZCCHC6 Missense_Mutation p.D851G 0.29 tolerated(0.11) benign(0.002) TCGA-BH-A0HA-01 9 95022502 95022503 - T IARS Frame_Shift_Ins p.M601Nfs*21 0.14 TCGA-BH-A0HA-01 9 96060333 96060333 C T WNK2 Silent p.V2006V 0.53 TCGA-BH-A0HA-01 X 105139442 105139442 A G NRK Missense_Mutation p.H169R 0.05 deleterious(0) probably_damaging(0.995) TCGA-BH-A0HA-01 X 114425899 114425899 A G RBMXL3 Missense_Mutation p.E632G 0.14 deleterious_low_confidence(0.02) benign(0.403) TCGA-BH-A0HA-01 X 114536623 114536623 A G LUZP4 Missense_Mutation p.N53S 0.40 tolerated(0.3) benign(0.054) TCGA-BH-A0HA-01 X 123657271 123657271 C T TENM1 Silent p.P992P 0.38 TCGA-BH-A0HA-01 X 134679388 134679389 - A DDX26B Frame_Shift_Ins p.N79Kfs*19 0.13 TCGA-BH-A0HA-01 X 134711286 134711286 G A DDX26B Missense_Mutation p.G648R 0.04 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-BH-A0HA-01 X 136113257 136113257 T C GPR101 Missense_Mutation p.T193A 0.15 tolerated(0.22) benign(0.036) TCGA-BH-A0HA-01 X 147026442 147026442 G A FMR1 Missense_Mutation p.E509K 0.18 tolerated(0.11) probably_damaging(0.999) TCGA-BH-A0HA-01 X 148579795 148579795 C T IDS Missense_Mutation p.C184Y 0.32 deleterious(0.02) probably_damaging(1) TCGA-BH-A0HA-01 X 150869297 150869297 G - PRRG3 Frame_Shift_Del p.G165Afs*7 0.34 TCGA-BH-A0HA-01 X 153592484 153592484 C T FLNA Missense_Mutation p.G729D 0.06 tolerated(0.07) probably_damaging(0.962) TCGA-BH-A0HA-01 X 153667353 153667353 G A GDI1 Silent p.G85G 0.19 TCGA-BH-A0HA-01 X 22292144 22292144 C T ZNF645 Nonsense_Mutation p.Q346* 0.15 TCGA-BH-A0HA-01 X 24830822 24830822 T C POLA1 Silent p.I1040I 0.26 TCGA-BH-A0HA-01 X 30260720 30260720 G A MAGEB4 Silent p.Q156Q 0.25 TCGA-BH-A0HA-01 X 34148695 34148695 A T FAM47A Missense_Mutation p.H567Q 0.17 tolerated(0.26) probably_damaging(0.944) TCGA-BH-A0HA-01 X 34150200 34150200 C T FAM47A Missense_Mutation p.E66K 0.11 tolerated(0.07) probably_damaging(0.921) TCGA-BH-A0HA-01 X 37026597 37026597 G A FAM47C Silent p.L38L 0.07 TCGA-BH-A0HA-01 X 37026612 37026612 G A FAM47C Silent p.V43V 0.08 TCGA-BH-A0HA-01 X 37026807 37026807 G A FAM47C Silent p.S108S 0.04 TCGA-BH-A0HA-01 X 44945128 44945128 A G KDM6A Missense_Mutation p.N1151S 0.32 deleterious(0) possibly_damaging(0.861) TCGA-BH-A0HA-01 X 49840503 49840503 G A CLCN5 Missense_Mutation p.E157K 0.05 deleterious(0.03) possibly_damaging(0.775) TCGA-BH-A0HA-01 X 54956207 54956207 T C TRO Missense_Mutation p.V1017A 0.11 tolerated(0.8) benign(0.035) TCGA-BH-A0HA-01 X 63411278 63411278 G A AMER1 Missense_Mutation p.A630V 0.41 tolerated(0.12) benign(0.006) TCGA-BH-A0HA-01 X 64137672 64137672 C T ZC4H2 Silent p.Q222Q 0.35 TCGA-BH-A0HA-01 X 68382828 68382828 G A PJA1 Missense_Mutation p.S85L 0.34 tolerated(0.55) benign(0.014) TCGA-BH-A0HA-01 X 70389300 70389300 C A NLGN3 Missense_Mutation p.L634M 0.36 deleterious(0.01) benign(0.391) TCGA-BH-A0HA-01 X 70674055 70674055 A T TAF1 Missense_Mutation p.I1617F 0.04 deleterious(0) probably_damaging(0.953) TCGA-BH-A0HA-01 X 74296459 74296459 T C ABCB7 Missense_Mutation p.K163E 0.33 deleterious(0) probably_damaging(0.992) TCGA-BH-A0HA-01 X 80377157 80377157 G A HMGN5 5'UTR 0.17 TCGA-BH-A0HA-01 X 80457737 80457737 C T SH3BGRL Missense_Mutation p.S13F 0.30 tolerated(0.24) possibly_damaging(0.797) TCGA-BH-A0HI-01 10 37414880 37414880 G T ANKRD30A 5'UTR 0.12 TCGA-BH-A0HI-01 10 69934047 69934047 C T MYPN Missense_Mutation p.T733I 0.35 tolerated(0.13) benign(0.002) TCGA-BH-A0HI-01 11 122930294 122930296 AGG - HSPA8 In_Frame_Del p.L336del 0.30 TCGA-BH-A0HI-01 11 18195416 18195416 G C MRGPRX4 Missense_Mutation p.G205R 0.27 deleterious(0.04) possibly_damaging(0.6) TCGA-BH-A0HI-01 11 64421180 64421180 C T NRXN2 Missense_Mutation p.G802S 0.32 tolerated(0.06) benign(0.002) TCGA-BH-A0HI-01 12 95645809 95645809 G A VEZT Missense_Mutation p.E44K 0.16 deleterious(0.03) benign(0.046) TCGA-BH-A0HI-01 13 48921982 48921982 G T RB1 Missense_Mutation p.L174F 0.17 tolerated(0.66) possibly_damaging(0.462) TCGA-BH-A0HI-01 14 92460257 92460257 C T TRIP11 Splice_Site p.X1686_splice 0.35 TCGA-BH-A0HI-01 16 85711840 85711843 CTCT - GINS2 Frame_Shift_Del p.E178Vfs*41 0.57 TCGA-BH-A0HI-01 17 21731445 21731445 A G UBBP4 Missense_Mutation p.T174A 0.25 deleterious(0) benign(0.133) TCGA-BH-A0HI-01 17 42456069 42456069 C T ITGA2B Missense_Mutation p.V630I 0.04 tolerated(1) benign(0.001) TCGA-BH-A0HI-01 17 56581178 56581178 C G MTMR4 Missense_Mutation p.G580R 0.34 tolerated(0.11) benign(0.026) TCGA-BH-A0HI-01 17 74155551 74155551 C T RNF157 Missense_Mutation p.G390E 0.08 tolerated(0.29) benign(0.061) TCGA-BH-A0HI-01 17 74944959 74944959 C G MGAT5B 3'UTR 0.34 TCGA-BH-A0HI-01 18 44122702 44122702 G A LOXHD1 Missense_Mutation p.H135Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-BH-A0HI-01 19 12969490 12969490 G A MAST1 Missense_Mutation p.V435I 0.27 deleterious(0) possibly_damaging(0.765) TCGA-BH-A0HI-01 19 49557755 49557755 G T CGB7 Missense_Mutation p.N97K 0.12 deleterious(0) probably_damaging(0.916) TCGA-BH-A0HI-01 1 151111915 151111915 G A SEMA6C Missense_Mutation p.R114W 0.19 deleterious(0) possibly_damaging(0.835) TCGA-BH-A0HI-01 1 237954734 237954734 T C RYR2 Silent p.Y4494Y 0.29 TCGA-BH-A0HI-01 20 46307432 46307432 C T SULF2 Missense_Mutation p.R394Q 0.30 tolerated(0.08) benign(0.037) TCGA-BH-A0HI-01 2 128262883 128262883 T A IWS1 Missense_Mutation p.E199V 0.05 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-BH-A0HI-01 2 145158777 145158777 C T ZEB2 Missense_Mutation p.R302Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HI-01 2 179427389 179427389 T C TTN Missense_Mutation p.T27824A 0.14 TCGA-BH-A0HI-01 2 36740822 36740822 G A CRIM1 Missense_Mutation p.R635Q 0.10 tolerated(0.16) probably_damaging(0.986) TCGA-BH-A0HI-01 2 73448984 73448985 TT - SMYD5 Frame_Shift_Del p.S191Pfs*4 0.14 TCGA-BH-A0HI-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A0HI-01 3 97851563 97851563 T C OR5H1 Silent p.L8L 0.11 TCGA-BH-A0HI-01 4 658672 658672 C T PDE6B Missense_Mutation p.A711V 0.15 deleterious(0) probably_damaging(0.995) TCGA-BH-A0HI-01 5 40909646 40909646 G A C7 5'UTR 0.24 TCGA-BH-A0HI-01 5 98115336 98115336 C T RGMB Silent p.F104F 0.25 TCGA-BH-A0HI-01 6 136512983 136512983 C T PDE7B 3'UTR 0.37 TCGA-BH-A0HI-01 6 27419341 27419341 C T ZNF184 Missense_Mutation p.G666E 0.33 deleterious(0) possibly_damaging(0.476) TCGA-BH-A0HI-01 7 142428804 142428804 G T TRBV28 Missense_Mutation p.R55L 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A0HI-01 8 92406479 92406479 C A SLC26A7 Missense_Mutation p.L657I 0.25 tolerated_low_confidence(0.11) possibly_damaging(0.567) TCGA-BH-A0HI-01 9 117804606 117804606 T G TNC Missense_Mutation p.K1714Q 0.25 tolerated(0.09) probably_damaging(0.93) TCGA-BH-A0HI-01 9 120474783 120474783 C T TLR4 Missense_Mutation p.S126L 0.13 tolerated(0.65) benign(0.038) TCGA-BH-A0HI-01 9 130289586 130289586 G A FAM129B Missense_Mutation p.R68C 0.40 deleterious(0.03) benign(0.029) TCGA-BH-A0HI-01 X 2773183 2773183 C T GYG2 Silent p.H189H 0.04 TCGA-BH-A0HK-01 10 102783366 102783366 C G PDZD7 Missense_Mutation p.E123D 0.21 tolerated(0.09) benign(0.101) TCGA-BH-A0HK-01 10 105836073 105836073 C T COL17A1 Missense_Mutation p.R106H 0.36 unknown(0) TCGA-BH-A0HK-01 10 53457893 53457893 C T CSTF2T Missense_Mutation p.G473S 0.38 tolerated_low_confidence(0.33) unknown(0) TCGA-BH-A0HK-01 10 97917115 97917115 C G ZNF518A RNA 0.05 TCGA-BH-A0HK-01 11 33127399 33127399 G C CSTF3 Intron 0.37 TCGA-BH-A0HK-01 11 74880255 74880255 G T SLCO2B1 Silent p.L162L 0.83 TCGA-BH-A0HK-01 12 123285673 123285673 G C CCDC62 Missense_Mutation p.R327T 0.30 tolerated(0.11) probably_damaging(0.956) TCGA-BH-A0HK-01 12 49428419 49428419 G A KMT2D Silent p.L3462L 0.36 TCGA-BH-A0HK-01 12 54422370 54422370 C T HOXC6 Missense_Mutation p.P22L 0.14 deleterious(0.01) possibly_damaging(0.691) TCGA-BH-A0HK-01 14 20009989 20009989 G A POTEM Intron 0.14 TCGA-BH-A0HK-01 16 31371302 31371302 G A ITGAX Missense_Mutation p.R208H 0.44 tolerated(0.12) benign(0.093) TCGA-BH-A0HK-01 17 15234729 15234729 G A TEKT3 Silent p.V58V 0.11 TCGA-BH-A0HK-01 17 4594696 4594696 T A PELP1 Silent p.A97A 0.60 TCGA-BH-A0HK-01 17 48174889 48174889 G A PDK2 Missense_Mutation p.R74Q 0.50 tolerated(0.4) benign(0.015) TCGA-BH-A0HK-01 18 58039364 58039364 C T MC4R Silent p.K73K 0.44 TCGA-BH-A0HK-01 19 33470935 33470935 G A RHPN2 Silent p.F676F 0.38 TCGA-BH-A0HK-01 19 45912777 45912777 G A ERCC1 3'Flank 0.36 TCGA-BH-A0HK-01 19 50093941 50093941 G A PRRG2 3'UTR 0.40 TCGA-BH-A0HK-01 19 53209437 53209437 C G ZNF611 Missense_Mutation p.E291Q 0.04 deleterious(0.03) probably_damaging(0.993) TCGA-BH-A0HK-01 1 101196990 101196990 C T VCAM1 Missense_Mutation p.L481F 0.10 deleterious(0.02) possibly_damaging(0.719) TCGA-BH-A0HK-01 1 11346014 11346014 C T UBIAD1 Silent p.I281I 0.05 TCGA-BH-A0HK-01 1 147381246 147381246 G A GJA8 Silent p.S388S 0.23 TCGA-BH-A0HK-01 1 151536442 151536442 G A TUFT1 Silent p.K100K 0.15 TCGA-BH-A0HK-01 1 152636817 152636817 G A LCE2D Missense_Mutation p.R79H 0.17 tolerated_low_confidence(0.62) unknown(0) TCGA-BH-A0HK-01 1 186045576 186045576 G A HMCN1 Silent p.Q2769Q 0.05 TCGA-BH-A0HK-01 1 206634388 206634388 G T SRGAP2 Nonsense_Mutation p.E861* 0.18 TCGA-BH-A0HK-01 1 214171121 214171121 G A PROX1 Missense_Mutation p.V415I 0.18 tolerated(0.06) probably_damaging(0.964) TCGA-BH-A0HK-01 1 227946737 227946737 G A SNAP47 Missense_Mutation p.S225N 0.10 tolerated(0.09) possibly_damaging(0.828) TCGA-BH-A0HK-01 1 228210498 228210498 G A WNT3A Missense_Mutation p.E68K 0.15 tolerated(0.08) probably_damaging(0.954) TCGA-BH-A0HK-01 1 229462694 229462694 C G CCSAP Missense_Mutation p.D143H 0.18 deleterious(0) probably_damaging(0.987) TCGA-BH-A0HK-01 1 248039902 248039902 C G TRIM58 3'UTR 0.14 TCGA-BH-A0HK-01 1 26507066 26507066 C G CNKSR1 Missense_Mutation p.L59V 0.12 deleterious(0.04) possibly_damaging(0.823) TCGA-BH-A0HK-01 1 36883700 36883700 C T OSCP1 3'UTR 0.33 TCGA-BH-A0HK-01 1 62738879 62738879 C T KANK4 Missense_Mutation p.V633M 0.26 tolerated(0.35) benign(0) TCGA-BH-A0HK-01 1 64643558 64643558 G A ROR1 Missense_Mutation p.V612I 0.06 tolerated(0.12) benign(0.014) TCGA-BH-A0HK-01 20 18374937 18374937 C T DZANK1 Missense_Mutation p.E557K 0.40 deleterious(0.01) possibly_damaging(0.803) TCGA-BH-A0HK-01 20 47864113 47864113 C T ZNFX1 Silent p.L1816L 0.10 TCGA-BH-A0HK-01 22 29693913 29693913 G A EWSR1 Missense_Mutation p.R469K 0.21 deleterious(0.03) unknown(0) TCGA-BH-A0HK-01 22 29834517 29834517 G A RFPL1 5'Flank 0.11 TCGA-BH-A0HK-01 2 186671695 186671695 G A FSIP2 Missense_Mutation p.D5977N 0.39 possibly_damaging(0.612) TCGA-BH-A0HK-01 2 48722823 48722823 C T PPP1R21 Silent p.L535L 0.40 TCGA-BH-A0HK-01 3 111693441 111693441 G A PHLDB2 3'UTR 0.25 TCGA-BH-A0HK-01 3 130714935 130714935 C T ATP2C1 Silent p.F736F 0.33 TCGA-BH-A0HK-01 3 183823927 183823927 G A HTR3E Missense_Mutation p.A339T 0.35 deleterious(0) possibly_damaging(0.481) TCGA-BH-A0HK-01 3 193132430 193132430 G A ATP13A4 Silent p.A984A 0.11 TCGA-BH-A0HK-01 3 33434910 33434910 G A UBP1 Missense_Mutation p.S476L 0.30 tolerated(0.75) benign(0.001) TCGA-BH-A0HK-01 4 122749044 122749044 A T BBS7 Intron 0.11 TCGA-BH-A0HK-01 4 17585131 17585131 G A LAP3 Silent p.L135L 0.23 TCGA-BH-A0HK-01 4 2172878 2172878 G A POLN Missense_Mutation p.H469Y 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-BH-A0HK-01 5 52216230 52216230 G C ITGA1 Missense_Mutation p.E742Q 0.43 deleterious(0.01) probably_damaging(0.925) TCGA-BH-A0HK-01 5 94030568 94030568 G A ANKRD32 Missense_Mutation p.G910R 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A0HK-01 6 144784000 144784000 G A UTRN Missense_Mutation p.E1022K 0.39 tolerated(0.15) benign(0.053) TCGA-BH-A0HK-01 6 30036119 30036119 G C PPP1R11 Intron 0.20 TCGA-BH-A0HK-01 6 31609094 31609094 G A BAG6 Intron 0.23 TCGA-BH-A0HK-01 6 31854617 31854617 C T EHMT2 Missense_Mutation p.V726M 0.06 deleterious(0.05) probably_damaging(0.982) TCGA-BH-A0HK-01 6 88313147 88313147 G A ORC3 Missense_Mutation p.E75K 0.37 tolerated(0.52) benign(0.005) TCGA-BH-A0HK-01 7 141952311 141952311 C T PRSS58 Missense_Mutation p.G186E 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A0HK-01 7 141952369 141952369 C G PRSS58 Missense_Mutation p.D167H 0.31 tolerated(0.06) possibly_damaging(0.653) TCGA-BH-A0HK-01 8 82629498 82629498 G A ZFAND1 Missense_Mutation p.H42Y 0.31 deleterious(0) possibly_damaging(0.86) TCGA-BH-A0HK-01 9 33386975 33386975 C T AQP7 Missense_Mutation p.R87H 0.17 deleterious(0.04) benign(0.003) TCGA-BH-A0HK-01 9 35611831 35611831 C T CD72 Nonsense_Mutation p.W307* 0.10 TCGA-BH-A0HK-01 X 37312587 37312587 C T PRRG1 Nonsense_Mutation p.Q124* 0.06 TCGA-BH-A0HK-01 X 86924323 86924323 C T KLHL4 Intron 0.40 TCGA-BH-A0HN-01 10 13166055 13166055 G A OPTN Missense_Mutation p.E315K 0.43 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HN-01 10 87362239 87362239 G A GRID1 Missense_Mutation p.R941W 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A0HN-01 11 134147635 134147635 G A GLB1L3 Missense_Mutation p.R64Q 0.89 deleterious(0.01) probably_damaging(0.918) TCGA-BH-A0HN-01 11 47436878 47436878 C T SLC39A13 Silent p.I360I 0.44 TCGA-BH-A0HN-01 11 94554978 94554978 G T AMOTL1 Missense_Mutation p.K468N 0.38 deleterious(0) probably_damaging(0.996) TCGA-BH-A0HN-01 11 94801110 94801110 C G SRSF8 Silent p.L240L 0.82 TCGA-BH-A0HN-01 13 26620593 26620593 G A SHISA2 3'UTR 0.55 TCGA-BH-A0HN-01 17 36476574 36476579 GTTCAA - MRPL45 In_Frame_Del p.Q196_V197del 0.47 TCGA-BH-A0HN-01 17 42225492 42225492 C T C17orf53 Silent p.S107S 0.42 TCGA-BH-A0HN-01 17 900500 900500 C T TIMM22 Missense_Mutation p.R40W 0.83 tolerated(0.17) possibly_damaging(0.549) TCGA-BH-A0HN-01 19 10229601 10229601 G A EIF3G Silent p.N61N 0.04 TCGA-BH-A0HN-01 19 11363489 11363489 C T DOCK6 Missense_Mutation p.R93Q 0.20 deleterious(0.01) probably_damaging(0.939) TCGA-BH-A0HN-01 19 3586586 3586586 C T GIPC3 Nonsense_Mutation p.R107* 0.34 TCGA-BH-A0HN-01 19 50251415 50251415 G A TSKS Missense_Mutation p.S169F 0.53 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HN-01 1 1720602 1720602 A G GNB1 Missense_Mutation p.I269T 0.17 deleterious(0) possibly_damaging(0.829) TCGA-BH-A0HN-01 1 32124115 32124115 C T COL16A1 Missense_Mutation p.G1332S 0.47 unknown(0) TCGA-BH-A0HN-01 1 3703861 3703861 G C LRRC47 Missense_Mutation p.S210W 0.33 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HN-01 20 5157078 5157078 A C CDS2 Intron 0.67 TCGA-BH-A0HN-01 20 5157095 5157095 G T CDS2 Intron 0.65 TCGA-BH-A0HN-01 22 32330040 32330040 C T C22orf24 3'UTR 0.31 TCGA-BH-A0HN-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.55 deleterious(0.01) probably_damaging(1) TCGA-BH-A0HN-01 4 114158316 114158316 C T ANK2 Silent p.D219D 0.60 TCGA-BH-A0HN-01 4 52899712 52899712 C A SGCB Missense_Mutation p.G43V 0.38 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HN-01 4 79780777 79780777 T C BMP2K Missense_Mutation p.I308T 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HN-01 4 87809322 87809322 G C C4orf36 Missense_Mutation p.L58V 0.43 deleterious(0.01) possibly_damaging(0.801) TCGA-BH-A0HN-01 6 129813116 129813129 GTTAAAAAGCTTTT - LAMA2 Frame_Shift_Del p.V2657Rfs*7 0.39 TCGA-BH-A0HN-01 7 116546391 116546391 T A CAPZA2 Missense_Mutation p.N167K 0.02 deleterious(0.02) possibly_damaging(0.869) TCGA-BH-A0HN-01 7 135311088 135311088 G A NUP205 Missense_Mutation p.R1591H 0.51 tolerated(0.11) possibly_damaging(0.846) TCGA-BH-A0HN-01 7 143701973 143701982 TCAAGGAAGC - OR6B1 Frame_Shift_Del p.K296* 0.27 TCGA-BH-A0HN-01 7 151962208 151962208 G A KMT2C Missense_Mutation p.H367Y 0.27 probably_damaging(0.995) TCGA-BH-A0HN-01 7 48086112 48086112 C G C7orf57 Missense_Mutation p.Q136E 0.59 tolerated(0.23) benign(0.108) TCGA-BH-A0HN-01 8 52361599 52361599 G A PXDNL Silent p.D443D 0.32 TCGA-BH-A0HN-01 9 107568529 107568529 G A ABCA1 Missense_Mutation p.P1486L 0.64 deleterious(0) benign(0.424) TCGA-BH-A0HN-01 9 113169227 113169227 C T SVEP1 Missense_Mutation p.D2885N 0.32 benign(0.001) TCGA-BH-A0HN-01 9 113637890 113637890 G A LPAR1 Silent p.F302F 0.59 TCGA-BH-A0HN-01 X 148797773 148797773 T A MAGEA11 Silent p.P209P 0.06 TCGA-BH-A0HN-01 X 77268400 77268400 A G ATP7A Missense_Mutation p.I733V 0.23 tolerated(1) benign(0.005) TCGA-BH-A0HP-01 10 104836880 104836880 G A CNNM2 Silent p.Q857Q 0.19 TCGA-BH-A0HP-01 10 134751139 134751139 C T TTC40 Missense_Mutation p.E193K 0.29 deleterious(0) possibly_damaging(0.711) TCGA-BH-A0HP-01 10 13838563 13838563 C A FRMD4A Missense_Mutation p.D78Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 10 14563985 14563985 C T FAM107B Silent p.Q229Q 0.04 TCGA-BH-A0HP-01 10 14862102 14862102 C T CDNF Silent p.L147L 0.08 TCGA-BH-A0HP-01 10 5014915 5014915 G A AKR1C1 Missense_Mutation p.E274K 0.22 tolerated(0.23) benign(0.133) TCGA-BH-A0HP-01 10 52595854 52595854 G A A1CF Missense_Mutation p.A203V 0.33 deleterious(0) possibly_damaging(0.887) TCGA-BH-A0HP-01 10 58120134 58120134 C T ZWINT Missense_Mutation p.E18K 0.14 tolerated(0.29) unknown(0) TCGA-BH-A0HP-01 10 61815778 61815778 C G ANK3 Missense_Mutation p.D4235H 0.18 probably_damaging(0.996) TCGA-BH-A0HP-01 10 61832247 61832247 C T ANK3 Missense_Mutation p.E2798K 0.06 benign(0.001) TCGA-BH-A0HP-01 10 61832745 61832745 C G ANK3 Missense_Mutation p.E2632Q 0.08 benign(0.026) TCGA-BH-A0HP-01 10 69676276 69676276 C G SIRT1 Missense_Mutation p.Q724E 0.09 deleterious_low_confidence(0.04) benign(0.055) TCGA-BH-A0HP-01 10 70719576 70719576 G A DDX21 Silent p.E34E 0.14 TCGA-BH-A0HP-01 10 70720000 70720000 G C DDX21 Missense_Mutation p.E176Q 0.11 deleterious(0.02) benign(0.011) TCGA-BH-A0HP-01 10 72462167 72462167 C T ADAMTS14 Missense_Mutation p.R208C 0.20 deleterious(0) probably_damaging(0.973) TCGA-BH-A0HP-01 10 74645659 74645659 G C MCU 3'UTR 0.20 TCGA-BH-A0HP-01 10 8106058 8106058 T A GATA3 Missense_Mutation p.M294K 0.24 deleterious(0) possibly_damaging(0.583) TCGA-BH-A0HP-01 10 88459072 88459072 G C LDB3 Intron 0.05 TCGA-BH-A0HP-01 10 89712018 89712018 T C PTEN Splice_Site p.X212_splice 0.31 TCGA-BH-A0HP-01 10 94230067 94230067 G C IDE Missense_Mutation p.Q718E 0.11 tolerated(0.26) benign(0.004) TCGA-BH-A0HP-01 10 96447986 96447986 C T CYP2C18 Nonsense_Mutation p.Q146* 0.13 TCGA-BH-A0HP-01 10 96745862 96745862 G C CYP2C9 Missense_Mutation p.D408H 0.09 deleterious(0) probably_damaging(0.995) TCGA-BH-A0HP-01 10 97424016 97424016 C T TCTN3 Silent p.V544V 0.18 TCGA-BH-A0HP-01 10 98108092 98108092 C T OPALIN Missense_Mutation p.R68K 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.567) TCGA-BH-A0HP-01 10 98205902 98205902 C G TLL2 Missense_Mutation p.E104Q 0.22 tolerated(0.47) benign(0.042) TCGA-BH-A0HP-01 11 107197524 107197524 C G CWF19L2 3'UTR 0.27 TCGA-BH-A0HP-01 11 113723334 113723334 G A USP28 Nonsense_Mutation p.Q53* 0.33 TCGA-BH-A0HP-01 11 116798097 116798097 C A SIK3 Splice_Site p.X94_splice 0.29 TCGA-BH-A0HP-01 11 125871671 125871671 C G CDON Missense_Mutation p.E701Q 0.19 deleterious(0.01) possibly_damaging(0.811) TCGA-BH-A0HP-01 11 128844843 128844843 G C ARHGAP32 Missense_Mutation p.S736C 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-BH-A0HP-01 11 1618885 1618885 C T KRTAP5-2 3'UTR 0.24 TCGA-BH-A0HP-01 11 30033947 30033947 C T KCNA4 Silent p.K93K 0.14 TCGA-BH-A0HP-01 11 33107491 33107491 G A CSTF3 Missense_Mutation p.P614S 0.24 tolerated(0.05) benign(0.363) TCGA-BH-A0HP-01 11 46334219 46334219 G C CREB3L1 Missense_Mutation p.K320N 0.16 deleterious(0.03) possibly_damaging(0.486) TCGA-BH-A0HP-01 11 4661785 4661785 C T OR51D1 Silent p.I255I 0.20 TCGA-BH-A0HP-01 11 47201107 47201107 C T PACSIN3 Missense_Mutation p.E212K 0.28 deleterious(0) possibly_damaging(0.521) TCGA-BH-A0HP-01 11 47201108 47201108 T G PACSIN3 Silent p.A211A 0.26 TCGA-BH-A0HP-01 11 55653691 55653691 G A TRIM51 Nonsense_Mutation p.W168* 0.14 TCGA-BH-A0HP-01 11 5776902 5776902 C T OR52N4 Missense_Mutation p.S311L 0.23 tolerated(0.81) benign(0.005) TCGA-BH-A0HP-01 11 59810970 59810970 G A OOSP2 Silent p.L31L 0.20 TCGA-BH-A0HP-01 11 64012756 64012756 C T PPP1R14B Missense_Mutation p.E88K 0.17 deleterious(0.02) probably_damaging(0.981) TCGA-BH-A0HP-01 11 65403698 65403698 C G PCNXL3 Nonsense_Mutation p.S1838* 0.38 TCGA-BH-A0HP-01 11 9875210 9875210 C G SBF2 Missense_Mutation p.D805H 0.04 deleterious(0.03) probably_damaging(0.984) TCGA-BH-A0HP-01 12 101555823 101555823 G C SLC5A8 Nonsense_Mutation p.S520* 0.04 TCGA-BH-A0HP-01 12 101776918 101776918 G A UTP20 Missense_Mutation p.E2586K 0.24 tolerated(0.33) benign(0.003) TCGA-BH-A0HP-01 12 109182744 109182744 C T SSH1 Missense_Mutation p.D724N 0.05 deleterious_low_confidence(0.02) benign(0.287) TCGA-BH-A0HP-01 12 117583909 117583909 C T FBXO21 Missense_Mutation p.E624K 0.22 tolerated_low_confidence(0.13) benign(0.007) TCGA-BH-A0HP-01 12 120534967 120534967 G C RAB35 3'UTR 0.25 TCGA-BH-A0HP-01 12 122957813 122957813 C G ZCCHC8 3'UTR 0.23 TCGA-BH-A0HP-01 12 122957824 122957824 C T ZCCHC8 3'UTR 0.19 TCGA-BH-A0HP-01 12 123214164 123214164 G A HCAR1 Silent p.L241L 0.24 TCGA-BH-A0HP-01 12 123687907 123687907 C A MPHOSPH9 Nonsense_Mutation p.E252* 0.09 TCGA-BH-A0HP-01 12 129558669 129558669 G A TMEM132D Silent p.F1017F 0.10 TCGA-BH-A0HP-01 12 130015639 130015639 G A TMEM132D Silent p.I360I 0.26 TCGA-BH-A0HP-01 12 133306539 133306539 C G ANKLE2 Missense_Mutation p.D737H 0.15 deleterious(0.03) possibly_damaging(0.907) TCGA-BH-A0HP-01 12 2997577 2997577 C T RHNO1 Silent p.L223L 0.23 TCGA-BH-A0HP-01 12 31249282 31249282 G A DDX11 Missense_Mutation p.R497Q 0.17 tolerated(0.14) possibly_damaging(0.653) TCGA-BH-A0HP-01 12 42835423 42835423 G C PPHLN1 Intron 0.21 TCGA-BH-A0HP-01 12 50616256 50616256 G C LIMA1 Missense_Mutation p.L60V 0.20 tolerated(0.09) benign(0.13) TCGA-BH-A0HP-01 12 62954645 62954645 G C MON2 Missense_Mutation p.D1262H 0.21 tolerated(0.1) benign(0.003) TCGA-BH-A0HP-01 12 64814203 64814203 G C XPOT Missense_Mutation p.E249Q 0.14 tolerated(0.05) probably_damaging(0.969) TCGA-BH-A0HP-01 12 6886451 6886451 C T LAG3 Missense_Mutation p.S360L 0.32 tolerated(1) benign(0.002) TCGA-BH-A0HP-01 12 72058275 72058275 G A THAP2 5'UTR 0.15 TCGA-BH-A0HP-01 12 86383282 86383282 C G MGAT4C Missense_Mutation p.D15H 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.726) TCGA-BH-A0HP-01 12 90005123 90005123 C T ATP2B1 Silent p.Q698Q 0.29 TCGA-BH-A0HP-01 12 9001389 9001389 C G A2ML1 Missense_Mutation p.S636C 0.21 tolerated(0.18) benign(0.009) TCGA-BH-A0HP-01 12 99042512 99042512 C T APAF1 Missense_Mutation p.L83F 0.27 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 13 21734089 21734089 G A SKA3 Silent p.F289F 0.02 TCGA-BH-A0HP-01 13 39611628 39611628 C T PROSER1 5'UTR 0.16 TCGA-BH-A0HP-01 13 52663415 52663415 G A NEK5 Nonsense_Mutation p.Q415* 0.15 TCGA-BH-A0HP-01 13 78327410 78327410 C T SLAIN1 Missense_Mutation p.S280F 0.19 deleterious(0) probably_damaging(0.919) TCGA-BH-A0HP-01 14 102548580 102548580 C T HSP90AA1 Missense_Mutation p.D775N 0.04 tolerated_low_confidence(0.06) unknown(0) TCGA-BH-A0HP-01 14 105409680 105409680 G A AHNAK2 Silent p.L4036L 0.25 TCGA-BH-A0HP-01 14 105414690 105414690 G T AHNAK2 Silent p.L2366L 0.15 TCGA-BH-A0HP-01 14 105478091 105478091 G A CDCA4 Missense_Mutation p.S59L 0.36 deleterious(0) probably_damaging(0.925) TCGA-BH-A0HP-01 14 105716550 105716550 C T BTBD6 Silent p.L333L 0.36 TCGA-BH-A0HP-01 14 21216085 21216085 G A EDDM3A Missense_Mutation p.E116K 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-BH-A0HP-01 14 53177881 53177881 C T PSMC6 Silent p.I121I 0.11 TCGA-BH-A0HP-01 14 57696455 57696455 A G EXOC5 Silent p.H431H 0.21 TCGA-BH-A0HP-01 14 62462665 62462665 C G SYT16 5'UTR 0.19 TCGA-BH-A0HP-01 14 77935762 77935762 G T AHSA1 3'UTR 0.25 TCGA-BH-A0HP-01 14 81737194 81737194 G T STON2 Missense_Mutation p.F811L 0.23 tolerated(0.41) probably_damaging(0.999) TCGA-BH-A0HP-01 14 93673338 93673338 C T C14orf142 Silent p.Q15Q 0.15 TCGA-BH-A0HP-01 15 41028522 41028522 G A RMDN3 3'UTR 0.23 TCGA-BH-A0HP-01 15 42052536 42052536 C G MGA Missense_Mutation p.L2403V 0.28 tolerated(0.27) benign(0.003) TCGA-BH-A0HP-01 15 43940233 43940233 C T CATSPER2 Silent p.Q9Q 0.33 TCGA-BH-A0HP-01 15 68600011 68600011 G A ITGA11 Silent p.V1066V 0.32 TCGA-BH-A0HP-01 15 85147402 85147402 G A ZSCAN2 Missense_Mutation p.E82K 0.31 tolerated(0.07) probably_damaging(0.982) TCGA-BH-A0HP-01 15 91346793 91346793 G A BLM Missense_Mutation p.G1134E 0.05 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 16 13010601 13010601 G A SHISA9 Missense_Mutation p.R207K 0.19 tolerated(0.93) possibly_damaging(0.906) TCGA-BH-A0HP-01 16 15973705 15973705 G C FOPNL Silent p.L89L 0.21 TCGA-BH-A0HP-01 16 20975814 20975814 C G DNAH3 Missense_Mutation p.G3131A 0.24 deleterious(0.05) benign(0.192) TCGA-BH-A0HP-01 16 23702689 23702689 C T ERN2 Missense_Mutation p.E860K 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 16 26147248 26147248 C T HS3ST4 Silent p.S350S 0.15 TCGA-BH-A0HP-01 16 29814143 29814143 G A KIF22 Missense_Mutation p.S445N 0.14 tolerated(0.21) benign(0.004) TCGA-BH-A0HP-01 16 4247856 4247856 G T SRL Missense_Mutation p.S107Y 0.22 deleterious(0) probably_damaging(0.991) TCGA-BH-A0HP-01 16 4935302 4935302 G C PPL Silent p.L1118L 0.17 TCGA-BH-A0HP-01 16 68844099 68844099 G A CDH1 Splice_Site p.X230_splice 0.44 TCGA-BH-A0HP-01 16 69973789 69973789 G C WWP2 Silent p.L853L 0.16 TCGA-BH-A0HP-01 16 72830257 72830257 C T ZFHX3 Silent p.Q2108Q 0.38 TCGA-BH-A0HP-01 16 81062223 81062223 G C CENPN Intron 0.23 TCGA-BH-A0HP-01 16 88783032 88783032 C G PIEZO1 Missense_Mutation p.Q2287H 0.40 deleterious(0.03) probably_damaging(0.992) TCGA-BH-A0HP-01 16 89831324 89831324 C G FANCA Missense_Mutation p.E918Q 0.28 tolerated(0.07) benign(0.403) TCGA-BH-A0HP-01 16 89831364 89831364 C T FANCA Silent p.Q904Q 0.33 TCGA-BH-A0HP-01 17 10293750 10293750 G A MYH8 3'UTR 0.04 TCGA-BH-A0HP-01 17 10366910 10366910 G A MYH4 Silent p.F233F 0.05 TCGA-BH-A0HP-01 17 16068438 16068438 G A NCOR1 Missense_Mutation p.S158F 0.13 possibly_damaging(0.781) TCGA-BH-A0HP-01 17 26821408 26821408 G A SLC13A2 Splice_Site p.X445_splice 0.13 TCGA-BH-A0HP-01 17 26911494 26911494 G C SPAG5 Silent p.L722L 0.06 TCGA-BH-A0HP-01 17 34105959 34105959 C G MMP28 Missense_Mutation p.E104D 0.24 tolerated(0.09) benign(0.23) TCGA-BH-A0HP-01 17 36623403 36623403 G A ARHGAP23 Silent p.Q493Q 0.30 TCGA-BH-A0HP-01 17 57968254 57968254 C G TUBD1 Missense_Mutation p.R37T 0.16 deleterious(0.02) benign(0.026) TCGA-BH-A0HP-01 17 62041972 62041972 G C SCN4A Missense_Mutation p.F436L 0.25 deleterious(0) probably_damaging(0.997) TCGA-BH-A0HP-01 17 73106677 73106677 G A ARMC7 Missense_Mutation p.E71K 0.43 deleterious(0.02) possibly_damaging(0.616) TCGA-BH-A0HP-01 18 13760040 13760040 C T RNMT 3'UTR 0.23 TCGA-BH-A0HP-01 18 21741479 21741479 G C CABYR Splice_Site 0.09 TCGA-BH-A0HP-01 18 39661358 39661358 G C PIK3C3 3'UTR 0.23 TCGA-BH-A0HP-01 18 55336501 55336501 C G ATP8B1 Intron 0.18 TCGA-BH-A0HP-01 18 55916155 55916155 G C NEDD4L Missense_Mutation p.E77Q 0.21 deleterious(0) probably_damaging(0.943) TCGA-BH-A0HP-01 18 64239380 64239380 C T CDH19 Missense_Mutation p.G21E 0.06 tolerated(0.78) benign(0) TCGA-BH-A0HP-01 19 10795244 10795244 C T ILF3 Intron 0.17 TCGA-BH-A0HP-01 19 14992033 14992033 G A OR7A17 Silent p.I45I 0.23 TCGA-BH-A0HP-01 19 15575074 15575074 C A RASAL3 Missense_Mutation p.E32D 0.29 tolerated(0.14) benign(0.408) TCGA-BH-A0HP-01 19 17690311 17690311 G C COLGALT1 Missense_Mutation p.Q429H 0.19 tolerated(0.06) benign(0.013) TCGA-BH-A0HP-01 19 19329979 19329979 G A NCAN Missense_Mutation p.R110Q 0.36 deleterious(0.01) possibly_damaging(0.773) TCGA-BH-A0HP-01 19 31768347 31768347 G C TSHZ3 Silent p.V784V 0.19 TCGA-BH-A0HP-01 19 41114263 41114263 C G LTBP4 Missense_Mutation p.R499G 0.26 deleterious(0.04) possibly_damaging(0.499) TCGA-BH-A0HP-01 19 42474537 42474537 C T ATP1A3 Intron 0.23 TCGA-BH-A0HP-01 19 44351927 44351927 C T ZNF283 Nonsense_Mutation p.R392* 0.23 TCGA-BH-A0HP-01 19 46116900 46116900 C G EML2 Missense_Mutation p.D776H 0.37 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HP-01 19 53116808 53116808 C T ZNF83 Missense_Mutation p.R337K 0.17 tolerated(0.18) benign(0.006) TCGA-BH-A0HP-01 19 53303801 53303801 G A ZNF28 Missense_Mutation p.H433Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-BH-A0HP-01 19 54756786 54756786 G T LILRB5 Silent p.L474L 0.22 TCGA-BH-A0HP-01 19 55715306 55715306 G A PTPRH Nonsense_Mutation p.Q244* 0.19 TCGA-BH-A0HP-01 19 58199785 58199785 G A ZNF551 3'UTR 0.24 TCGA-BH-A0HP-01 19 7918195 7918195 G A EVI5L Silent p.E374E 0.31 TCGA-BH-A0HP-01 1 100174482 100174482 G A FRRS1 Missense_Mutation p.S618L 0.26 deleterious_low_confidence(0.05) benign(0.002) TCGA-BH-A0HP-01 1 101427454 101427454 C T SLC30A7 Silent p.L305L 0.05 TCGA-BH-A0HP-01 1 108303488 108303488 C G VAV3 Missense_Mutation p.R312T 0.19 deleterious(0) possibly_damaging(0.722) TCGA-BH-A0HP-01 1 110998922 110998922 C T PROK1 Silent p.F89F 0.19 TCGA-BH-A0HP-01 1 11174872 11174872 C G MTOR Missense_Mutation p.E2388Q 0.15 deleterious(0) probably_damaging(0.97) TCGA-BH-A0HP-01 1 112043016 112043016 G A ADORA3 Intron 0.08 TCGA-BH-A0HP-01 1 12939611 12939611 C T PRAMEF4 Silent p.L397L 0.16 TCGA-BH-A0HP-01 1 12943161 12943161 G T PRAMEF4 Missense_Mutation p.L19M 0.47 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 1 145522859 145522859 C T PEX11B Silent p.L240L 0.19 TCGA-BH-A0HP-01 1 146759364 146759364 C T CHD1L Nonsense_Mutation p.R758* 0.18 TCGA-BH-A0HP-01 1 151372187 151372187 C G PSMB4 Missense_Mutation p.P42A 0.17 tolerated(0.54) benign(0.002) TCGA-BH-A0HP-01 1 152129019 152129019 C G RPTN Missense_Mutation p.E186Q 0.19 deleterious(0.04) probably_damaging(0.917) TCGA-BH-A0HP-01 1 156236136 156236136 C T SMG5 Missense_Mutation p.E431K 0.09 tolerated(0.4) benign(0.229) TCGA-BH-A0HP-01 1 161018228 161018228 G A ARHGAP30 Silent p.L861L 0.26 TCGA-BH-A0HP-01 1 16257914 16257914 C T SPEN Nonsense_Mutation p.Q1727* 0.28 TCGA-BH-A0HP-01 1 163043290 163043290 G A RGS4 Missense_Mutation p.E183K 0.12 deleterious(0.01) possibly_damaging(0.631) TCGA-BH-A0HP-01 1 163318851 163318851 G A NUF2 Missense_Mutation p.R414K 0.44 tolerated(1) benign(0.002) TCGA-BH-A0HP-01 1 16342076 16342076 C T HSPB7 Silent p.%3D 0.35 TCGA-BH-A0HP-01 1 165398042 165398042 G C RXRG Missense_Mutation p.R71G 0.07 tolerated_low_confidence(0.14) probably_damaging(0.982) TCGA-BH-A0HP-01 1 171251126 171251126 G A FMO1 Silent p.L279L 0.13 TCGA-BH-A0HP-01 1 173579111 173579111 G A ANKRD45 3'UTR 0.19 TCGA-BH-A0HP-01 1 173949979 173949979 G C RC3H1 Missense_Mutation p.H313D 0.07 deleterious(0) benign(0.23) TCGA-BH-A0HP-01 1 177898832 177898832 G C SEC16B 3'UTR 0.09 TCGA-BH-A0HP-01 1 181767970 181767970 G A CACNA1E Silent p.%3D 0.17 TCGA-BH-A0HP-01 1 183495838 183495838 G A SMG7 Silent p.V140V 0.10 TCGA-BH-A0HP-01 1 186014856 186014856 C T HMCN1 Missense_Mutation p.S2114F 0.19 probably_damaging(0.998) TCGA-BH-A0HP-01 1 196695948 196695948 C T CFH Missense_Mutation p.S705F 0.15 deleterious(0.01) benign(0.076) TCGA-BH-A0HP-01 1 201030419 201030419 C T CACNA1S Silent p.K1077K 0.19 TCGA-BH-A0HP-01 1 205130512 205130512 C T DSTYK Missense_Mutation p.E608K 0.21 deleterious(0.04) possibly_damaging(0.742) TCGA-BH-A0HP-01 1 206776375 206776375 G C EIF2D Silent p.L238L 0.16 TCGA-BH-A0HP-01 1 207262788 207262788 C A C4BPB 5'UTR 0.16 TCGA-BH-A0HP-01 1 216061968 216061968 G C USH2A Missense_Mutation p.L2675V 0.18 possibly_damaging(0.641) TCGA-BH-A0HP-01 1 223402560 223402560 G C SUSD4 Missense_Mutation p.Q299E 0.21 tolerated(0.28) probably_damaging(0.981) TCGA-BH-A0HP-01 1 225742783 225742783 G A ENAH Silent p.V58V 0.18 TCGA-BH-A0HP-01 1 39877483 39877483 G C KIAA0754 Missense_Mutation p.E380Q 0.32 benign(0.008) TCGA-BH-A0HP-01 1 39877816 39877816 G C KIAA0754 Missense_Mutation p.D491H 0.31 benign(0.055) TCGA-BH-A0HP-01 1 40705986 40705986 G A RLF Missense_Mutation p.C1871Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-BH-A0HP-01 1 41228646 41228646 G A NFYC Silent p.Q216Q 0.17 TCGA-BH-A0HP-01 1 44079330 44079330 G A PTPRF Missense_Mutation p.D1339N 0.08 tolerated(0.17) possibly_damaging(0.514) TCGA-BH-A0HP-01 1 44087660 44087660 C A PTPRF Missense_Mutation p.H1904N 0.18 deleterious(0.02) probably_damaging(0.968) TCGA-BH-A0HP-01 1 47283813 47283813 C T CYP4B1 Missense_Mutation p.S428F 0.26 deleterious(0) benign(0.003) TCGA-BH-A0HP-01 1 55118580 55118580 G A MROH7 5'UTR 0.21 TCGA-BH-A0HP-01 1 6215763 6215763 C T CHD5 Silent p.S134S 0.25 TCGA-BH-A0HP-01 1 6504709 6504709 C A ESPN Missense_Mutation p.H387N 0.17 deleterious(0.01) benign(0.394) TCGA-BH-A0HP-01 1 65656505 65656505 C T AK4 Silent p.L86L 0.26 TCGA-BH-A0HP-01 1 65878608 65878608 C G DNAJC6 Missense_Mutation p.A938G 0.20 deleterious(0.02) benign(0.027) TCGA-BH-A0HP-01 1 6727831 6727831 C G DNAJC11 Missense_Mutation p.E106Q 0.20 deleterious(0) probably_damaging(0.987) TCGA-BH-A0HP-01 1 8073337 8073337 G C ERRFI1 Nonsense_Mutation p.S441* 0.12 TCGA-BH-A0HP-01 1 86144457 86144457 C A ZNHIT6 Missense_Mutation p.D366Y 0.18 deleterious(0.03) benign(0.07) TCGA-BH-A0HP-01 1 9781571 9781571 C T PIK3CD Silent p.C627C 0.28 TCGA-BH-A0HP-01 1 9794165 9794165 C T CLSTN1 Missense_Mutation p.D716N 0.29 tolerated(1) benign(0.005) TCGA-BH-A0HP-01 1 9995660 9995660 C T LZIC Missense_Mutation p.E43K 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-BH-A0HP-01 20 30486275 30486275 G A TTLL9 Splice_Site p.X38_splice 0.27 TCGA-BH-A0HP-01 20 30486358 30486358 G T TTLL9 Nonsense_Mutation p.E66* 0.15 TCGA-BH-A0HP-01 20 32685285 32685285 G C EIF2S2 Missense_Mutation p.I157M 0.25 deleterious(0.03) benign(0.276) TCGA-BH-A0HP-01 20 42835595 42835595 C G OSER1 Translation_Start_Site p.M1? 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-BH-A0HP-01 20 45188729 45188729 C T SLC13A3 Missense_Mutation p.D581N 0.22 tolerated(1) benign(0.001) TCGA-BH-A0HP-01 20 49508007 49508007 C T ADNP Missense_Mutation p.D1082N 0.09 deleterious_low_confidence(0.01) benign(0.239) TCGA-BH-A0HP-01 20 49508164 49508164 C G ADNP Missense_Mutation p.K1029N 0.10 tolerated_low_confidence(0.43) benign(0.002) TCGA-BH-A0HP-01 20 49508270 49508270 C G ADNP Missense_Mutation p.G994A 0.12 tolerated_low_confidence(0.23) benign(0.011) TCGA-BH-A0HP-01 20 49508298 49508298 C G ADNP Missense_Mutation p.E985Q 0.13 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-BH-A0HP-01 20 49508391 49508391 C G ADNP Missense_Mutation p.D954H 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.67) TCGA-BH-A0HP-01 20 49508687 49508687 C G ADNP Missense_Mutation p.R855T 0.11 tolerated_low_confidence(0.29) benign(0.001) TCGA-BH-A0HP-01 20 51872856 51872856 G A TSHZ2 Missense_Mutation p.M953I 0.21 tolerated(0.35) benign(0.245) TCGA-BH-A0HP-01 20 5921753 5921753 C T TRMT6 Silent p.E416E 0.22 TCGA-BH-A0HP-01 21 36252856 36252857 - T RUNX1 Frame_Shift_Ins p.R169Kfs*44 0.20 TCGA-BH-A0HP-01 21 38845021 38845021 C T DYRK1A Missense_Mutation p.R16W 0.30 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-BH-A0HP-01 21 38853104 38853104 G C DYRK1A Missense_Mutation p.L164F 0.14 deleterious(0.02) probably_damaging(0.96) TCGA-BH-A0HP-01 21 39671951 39671951 T C KCNJ15 Silent p.H256H 0.09 TCGA-BH-A0HP-01 21 46032860 46032860 C T KRTAP10-8 3'UTR 0.33 TCGA-BH-A0HP-01 22 32788229 32788229 C G RTCB Missense_Mutation p.E470Q 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 22 33960864 33960864 C G LARGE Missense_Mutation p.E253Q 0.25 tolerated(0.15) possibly_damaging(0.887) TCGA-BH-A0HP-01 22 37334464 37334464 C A CSF2RB Missense_Mutation p.Q872K 0.32 deleterious(0.01) possibly_damaging(0.706) TCGA-BH-A0HP-01 22 42293122 42293122 G A SREBF2 Missense_Mutation p.M854I 0.23 deleterious(0.04) benign(0.001) TCGA-BH-A0HP-01 22 42912034 42912034 G A RRP7A Missense_Mutation p.H109Y 0.27 tolerated(0.07) benign(0.002) TCGA-BH-A0HP-01 22 51183213 51183213 C G ACR Missense_Mutation p.L282V 0.19 deleterious(0.02) probably_damaging(1) TCGA-BH-A0HP-01 2 100625289 100625289 G T AFF3 Missense_Mutation p.F78L 0.14 deleterious(0) probably_damaging(0.991) TCGA-BH-A0HP-01 2 111398712 111398712 C G BUB1 Missense_Mutation p.D952H 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 2 11355053 11355053 C G ROCK2 Missense_Mutation p.E617Q 0.03 tolerated(0.34) benign(0.14) TCGA-BH-A0HP-01 2 152404198 152404198 C T NEB Missense_Mutation p.D6738N 0.27 probably_damaging(1) TCGA-BH-A0HP-01 2 158991285 158991285 C G UPP2 Silent p.L336L 0.31 TCGA-BH-A0HP-01 2 160035600 160035600 C T TANC1 Silent p.F812F 0.21 TCGA-BH-A0HP-01 2 170099969 170099969 G C LRP2 Missense_Mutation p.S1165W 0.11 probably_damaging(0.942) TCGA-BH-A0HP-01 2 172196014 172196014 G C METTL8 Missense_Mutation p.H96D 0.13 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 2 179497091 179497091 C G TTN Missense_Mutation p.E14510D 0.22 TCGA-BH-A0HP-01 2 180634302 180634302 G A ZNF385B Nonsense_Mutation p.R61* 0.26 TCGA-BH-A0HP-01 2 191301691 191301691 C T MFSD6 Silent p.V312V 0.21 TCGA-BH-A0HP-01 2 198267361 198267361 T C SF3B1 Missense_Mutation p.K666E 0.28 deleterious(0) probably_damaging(0.983) TCGA-BH-A0HP-01 2 201887608 201887608 C G FAM126B Silent p.R33R 0.26 TCGA-BH-A0HP-01 2 203139857 203139857 C G NOP58 Missense_Mutation p.Q23E 0.19 tolerated(0.63) benign(0.058) TCGA-BH-A0HP-01 2 210557864 210557864 C G MAP2 Missense_Mutation p.L324V 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.886) TCGA-BH-A0HP-01 2 212285277 212285277 C T ERBB4 Silent p.L1008L 0.26 TCGA-BH-A0HP-01 2 220251466 220251466 G T DNPEP Missense_Mutation p.A85D 0.33 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 2 220338317 220338317 C G SPEG Missense_Mutation p.F1413L 0.27 benign(0.006) TCGA-BH-A0HP-01 2 230678948 230678948 C - TRIP12 Splice_Site p.X560_splice 0.21 TCGA-BH-A0HP-01 2 233709098 233709098 G C GIGYF2 Missense_Mutation p.S1061T 0.04 unknown(0) TCGA-BH-A0HP-01 2 234878931 234878931 C T TRPM8 Missense_Mutation p.S739F 0.21 tolerated(0.33) probably_damaging(0.961) TCGA-BH-A0HP-01 2 24011418 24011418 G C ATAD2B Missense_Mutation p.Q914E 0.10 deleterious(0.03) benign(0.004) TCGA-BH-A0HP-01 2 240982327 240982327 G C PRR21 Missense_Mutation p.Q25E 0.25 tolerated_low_confidence(0.3) benign(0.179) TCGA-BH-A0HP-01 2 26022344 26022344 G C ASXL2 Missense_Mutation p.Q105E 0.12 tolerated(0.32) benign(0.134) TCGA-BH-A0HP-01 2 26203692 26203692 G T KIF3C Silent p.I365I 0.23 TCGA-BH-A0HP-01 2 27424621 27424621 G C SLC5A6 Missense_Mutation p.S486C 0.06 tolerated(0.2) benign(0.195) TCGA-BH-A0HP-01 2 42997320 42997320 G A HAAO Silent p.F149F 0.16 TCGA-BH-A0HP-01 2 54891600 54891600 C T SPTBN1 Missense_Mutation p.T2144M 0.26 tolerated(0.1) benign(0.172) TCGA-BH-A0HP-01 2 61708356 61708356 G C XPO1 Missense_Mutation p.F1011L 0.24 deleterious(0.02) benign(0.081) TCGA-BH-A0HP-01 2 71576606 71576606 G C ZNF638 Missense_Mutation p.L174F 0.20 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 2 84932783 84932783 C A DNAH6 Missense_Mutation p.S2880Y 0.03 deleterious(0) probably_damaging(0.995) TCGA-BH-A0HP-01 2 85051283 85051283 G C TRABD2A Missense_Mutation p.I327M 0.11 tolerated_low_confidence(0.25) benign(0.223) TCGA-BH-A0HP-01 2 98206243 98206243 C T ANKRD36B RNA 0.33 TCGA-BH-A0HP-01 2 99203969 99203969 G C INPP4A Missense_Mutation p.K944N 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 3 133647431 133647431 C T C3orf36 Missense_Mutation p.E73K 0.38 tolerated_low_confidence(0.48) possibly_damaging(0.486) TCGA-BH-A0HP-01 3 141671859 141671859 C G TFDP2 Splice_Site p.X351_splice 0.22 TCGA-BH-A0HP-01 3 155493550 155493550 C G C3orf33 Missense_Mutation p.E45Q 0.20 tolerated(0.06) probably_damaging(0.913) TCGA-BH-A0HP-01 3 15711627 15711627 C T ANKRD28 3'UTR 0.10 TCGA-BH-A0HP-01 3 160225904 160225904 C G KPNA4 Missense_Mutation p.E455Q 0.20 deleterious(0.01) benign(0.03) TCGA-BH-A0HP-01 3 183432996 183432996 G A YEATS2 Missense_Mutation p.E16K 0.23 deleterious(0.01) possibly_damaging(0.842) TCGA-BH-A0HP-01 3 187088789 187088789 G A RTP4 Silent p.L123L 0.31 TCGA-BH-A0HP-01 3 196736612 196736612 C A MFI2 Missense_Mutation p.D468Y 0.19 deleterious(0.01) benign(0.152) TCGA-BH-A0HP-01 3 20161094 20161094 C A KAT2B Silent p.I385I 0.11 TCGA-BH-A0HP-01 3 33059951 33059951 C G GLB1 Missense_Mutation p.A446P 0.30 tolerated(0.2) possibly_damaging(0.882) TCGA-BH-A0HP-01 3 37369998 37369998 G A GOLGA4 Missense_Mutation p.E2033K 0.21 possibly_damaging(0.823) TCGA-BH-A0HP-01 3 38006086 38006086 G A CTDSPL Missense_Mutation p.E98K 0.22 tolerated(0.17) benign(0.063) TCGA-BH-A0HP-01 3 38968358 38968358 G C SCN11A Missense_Mutation p.L185V 0.20 tolerated(0.32) possibly_damaging(0.6) TCGA-BH-A0HP-01 3 47680259 47680259 C G SMARCC1 Missense_Mutation p.E778Q 0.21 tolerated(0.2) benign(0.015) TCGA-BH-A0HP-01 3 52847337 52847337 G A ITIH4 3'UTR 0.23 TCGA-BH-A0HP-01 3 72799396 72799396 C G SHQ1 3'UTR 0.10 TCGA-BH-A0HP-01 4 104070349 104070349 G C CENPE Missense_Mutation p.L1205V 0.02 benign(0.279) TCGA-BH-A0HP-01 4 122682808 122682808 G A TMEM155 Silent p.L33L 0.25 TCGA-BH-A0HP-01 4 16010727 16010727 G C PROM1 Missense_Mutation p.I382M 0.10 deleterious(0.05) benign(0.217) TCGA-BH-A0HP-01 4 175184090 175184090 C T FBXO8 Missense_Mutation p.D52N 0.03 tolerated_low_confidence(0.08) possibly_damaging(0.628) TCGA-BH-A0HP-01 4 184932148 184932148 G C STOX2 Silent p.S719S 0.09 TCGA-BH-A0HP-01 4 37445636 37445636 G A KIAA1239 Missense_Mutation p.E676K 0.20 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 4 40351124 40351124 C T CHRNA9 Silent p.F197F 0.28 TCGA-BH-A0HP-01 4 77082717 77082717 C T SCARB2 3'UTR 0.26 TCGA-BH-A0HP-01 4 79831828 79831828 C G BMP2K Missense_Mutation p.I709M 0.17 tolerated_low_confidence(0.12) unknown(0) TCGA-BH-A0HP-01 4 85638146 85638146 C G WDFY3 Missense_Mutation p.R2593T 0.17 tolerated(0.4) benign(0.003) TCGA-BH-A0HP-01 4 87968288 87968288 C T AFF1 Missense_Mutation p.P201S 0.19 tolerated(0.8) benign(0.444) TCGA-BH-A0HP-01 4 88537602 88537602 C T DSPP Missense_Mutation p.S1263F 0.22 unknown(0) TCGA-BH-A0HP-01 4 89388340 89388340 G A HERC5 Missense_Mutation p.E348K 0.19 tolerated(0.14) benign(0.231) TCGA-BH-A0HP-01 5 118468832 118468832 G A DMXL1 Missense_Mutation p.D441N 0.23 tolerated(0.07) benign(0.019) TCGA-BH-A0HP-01 5 137721882 137721882 G A KDM3B Missense_Mutation p.E318K 0.23 tolerated(0.1) probably_damaging(0.932) TCGA-BH-A0HP-01 5 150439923 150439923 C T TNIP1 Missense_Mutation p.E131K 0.24 deleterious(0) benign(0.281) TCGA-BH-A0HP-01 5 156672782 156672782 C T ITK Missense_Mutation p.S499F 0.26 deleterious(0) probably_damaging(0.999) TCGA-BH-A0HP-01 5 159776212 159776212 A T C1QTNF2 Missense_Mutation p.L319Q 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 5 176048277 176048277 C T SNCB Missense_Mutation p.E104K 0.30 deleterious(0.01) unknown(0) TCGA-BH-A0HP-01 5 179545688 179545688 G A RASGEF1C Missense_Mutation p.T335M 0.05 deleterious(0) possibly_damaging(0.776) TCGA-BH-A0HP-01 5 31401613 31401613 C G DROSHA Missense_Mutation p.E1351Q 0.16 tolerated(0.34) benign(0.082) TCGA-BH-A0HP-01 5 38493737 38493737 G A LIFR Missense_Mutation p.S679L 0.15 tolerated(0.1) benign(0.137) TCGA-BH-A0HP-01 5 41731843 41731843 C G OXCT1 Missense_Mutation p.Q517H 0.18 deleterious(0.03) benign(0.027) TCGA-BH-A0HP-01 5 65474672 65474672 C T SREK1 Silent p.L617L 0.22 TCGA-BH-A0HP-01 5 68419174 68419174 G A SLC30A5 Silent p.L640L 0.19 TCGA-BH-A0HP-01 5 89977200 89977200 G A GPR98 Missense_Mutation p.E1865K 0.04 possibly_damaging(0.899) TCGA-BH-A0HP-01 5 94043142 94043142 G C MCTP1 3'UTR 0.26 TCGA-BH-A0HP-01 6 102124653 102124653 G A GRIK2 Missense_Mutation p.E233K 0.21 tolerated(0.22) benign(0.132) TCGA-BH-A0HP-01 6 110763662 110763662 G A SLC22A16 Missense_Mutation p.S323L 0.20 deleterious(0.04) possibly_damaging(0.733) TCGA-BH-A0HP-01 6 132859522 132859522 C T TAAR9 Nonsense_Mutation p.R32* 0.23 TCGA-BH-A0HP-01 6 27840100 27840100 G A HIST1H1B 5'Flank 0.33 TCGA-BH-A0HP-01 6 30671702 30671702 G C MDC1 Nonsense_Mutation p.S1753* 0.12 TCGA-BH-A0HP-01 6 3085612 3085612 G T RIPK1 Missense_Mutation p.A270S 0.28 tolerated(0.38) benign(0.216) TCGA-BH-A0HP-01 6 41065117 41065117 G C NFYA Missense_Mutation p.E338Q 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.541) TCGA-BH-A0HP-01 6 43550143 43550143 G C POLH Missense_Mutation p.L29F 0.23 deleterious(0.05) probably_damaging(0.923) TCGA-BH-A0HP-01 6 43752527 43752527 G T VEGFA 3'Flank 0.28 TCGA-BH-A0HP-01 6 50681599 50681599 G C TFAP2D 5'UTR 0.25 TCGA-BH-A0HP-01 6 56479505 56479505 G A DST Intron 0.19 TCGA-BH-A0HP-01 6 79672892 79672892 C T PHIP Missense_Mutation p.D1153N 0.24 deleterious(0.04) probably_damaging(0.989) TCGA-BH-A0HP-01 7 103179714 103179714 C G RELN Missense_Mutation p.D2331H 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0HP-01 7 105662855 105662855 C T CDHR3 Silent p.V679V 0.26 TCGA-BH-A0HP-01 7 11676040 11676040 C T THSD7A Missense_Mutation p.E247K 0.17 tolerated(0.72) benign(0.102) TCGA-BH-A0HP-01 7 12395908 12395908 C T VWDE Missense_Mutation p.D1192N 0.10 tolerated(1) benign(0.021) TCGA-BH-A0HP-01 7 138865859 138865859 G C TTC26 Missense_Mutation p.R445T 0.21 tolerated(0.14) benign(0.011) TCGA-BH-A0HP-01 7 13978766 13978766 C G ETV1 Missense_Mutation p.G114A 0.08 tolerated(0.06) possibly_damaging(0.868) TCGA-BH-A0HP-01 7 155301698 155301698 G A CNPY1 Missense_Mutation p.T12M 0.23 deleterious(0) probably_damaging(0.993) TCGA-BH-A0HP-01 7 26237271 26237271 C G HNRNPA2B1 Missense_Mutation p.E42Q 0.16 tolerated(0.13) benign(0.145) TCGA-BH-A0HP-01 7 42959326 42959326 C G PSMA2 Intron 0.22 TCGA-BH-A0HP-01 7 48427518 48427518 C T ABCA13 Missense_Mutation p.S3812F 0.20 probably_damaging(0.935) TCGA-BH-A0HP-01 7 63797334 63797334 G A ZNF736 Missense_Mutation p.R67K 0.23 deleterious(0.05) benign(0.007) TCGA-BH-A0HP-01 7 77789382 77789382 G A MAGI2 Silent p.I935I 0.13 TCGA-BH-A0HP-01 7 91842614 91842614 G A KRIT1 Silent p.F640F 0.18 TCGA-BH-A0HP-01 7 99701112 99701112 C T AP4M1 Silent p.F144F 0.21 TCGA-BH-A0HP-01 8 102643862 102643862 C G GRHL2 Intron 0.15 TCGA-BH-A0HP-01 8 105503585 105503585 C T LRP12 Silent p.Q632Q 0.25 TCGA-BH-A0HP-01 8 11281971 11281971 G A FAM167A Missense_Mutation p.L186F 0.16 tolerated(0.05) probably_damaging(0.995) TCGA-BH-A0HP-01 8 120598503 120598503 G C ENPP2 Silent p.P482P 0.21 TCGA-BH-A0HP-01 8 124266322 124266322 G C ZHX1 Nonsense_Mutation p.S622* 0.17 TCGA-BH-A0HP-01 8 133637540 133637540 G C LRRC6 Missense_Mutation p.R272G 0.22 deleterious(0) possibly_damaging(0.734) TCGA-BH-A0HP-01 8 144900366 144900366 G A PUF60 Silent p.I200I 0.18 TCGA-BH-A0HP-01 8 21957402 21957402 G A FAM160B2 Missense_Mutation p.E447K 0.19 deleterious(0) probably_damaging(0.968) TCGA-BH-A0HP-01 8 30511024 30511024 G A GTF2E2 Missense_Mutation p.S31L 0.03 tolerated(0.1) benign(0) TCGA-BH-A0HP-01 8 54852243 54852243 C T RGS20 Silent p.N206N 0.26 TCGA-BH-A0HP-01 8 54897032 54897032 C G TCEA1 Missense_Mutation p.R190T 0.19 deleterious(0) possibly_damaging(0.821) TCGA-BH-A0HP-01 8 81412521 81412521 C G ZBTB10 Missense_Mutation p.P589A 0.24 deleterious(0.05) benign(0.15) TCGA-BH-A0HP-01 9 117092822 117092822 G C ORM2 Missense_Mutation p.E75Q 0.23 deleterious(0.05) probably_damaging(0.909) TCGA-BH-A0HP-01 9 125487177 125487177 G A OR1L4 Silent p.K303K 0.18 TCGA-BH-A0HP-01 9 131331165 131331165 G A SPTAN1 Missense_Mutation p.E118K 0.10 deleterious(0.02) possibly_damaging(0.668) TCGA-BH-A0HP-01 9 139904093 139904093 C T ABCA2 Missense_Mutation p.E2212K 0.21 deleterious(0.01) possibly_damaging(0.475) TCGA-BH-A0HP-01 9 36107994 36107994 C G RECK Missense_Mutation p.S533C 0.09 deleterious(0) probably_damaging(0.98) TCGA-BH-A0HP-01 9 5762597 5762597 G A KIAA1432 Silent p.Q683Q 0.23 TCGA-BH-A0HP-01 9 6013905 6013905 C T RANBP6 Missense_Mutation p.C568Y 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A0HP-01 9 72913049 72913049 G C SMC5 Silent p.L407L 0.22 TCGA-BH-A0HP-01 9 79320522 79320522 C T PRUNE2 Missense_Mutation p.R2223K 0.09 tolerated(0.41) benign(0.025) TCGA-BH-A0HP-01 9 96000559 96000559 C G WNK2 Missense_Mutation p.I426M 0.10 unknown(0) TCGA-BH-A0HP-01 X 100910882 100910882 C G ARMCX2 Missense_Mutation p.E565Q 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-BH-A0HP-01 X 100910946 100910946 C A ARMCX2 Missense_Mutation p.K543N 0.21 deleterious(0) probably_damaging(0.925) TCGA-BH-A0HP-01 X 100910996 100910996 C T ARMCX2 Missense_Mutation p.E527K 0.17 deleterious(0.02) probably_damaging(0.981) TCGA-BH-A0HP-01 X 100911132 100911132 C T ARMCX2 Silent p.L481L 0.19 TCGA-BH-A0HP-01 X 100911530 100911530 C G ARMCX2 Missense_Mutation p.E349Q 0.21 deleterious(0.05) probably_damaging(0.948) TCGA-BH-A0HP-01 X 107397036 107397036 G A ATG4A 3'UTR 0.28 TCGA-BH-A0HP-01 X 119573125 119573125 C T LAMP2 Intron 0.05 TCGA-BH-A0HP-01 X 133941504 133941504 G A FAM122C 5'UTR 0.30 TCGA-BH-A0HP-01 X 135750051 135750051 G C ARHGEF6 3'UTR 0.18 TCGA-BH-A0HP-01 X 147018127 147018127 G C FMR1 Missense_Mutation p.E329Q 0.03 tolerated(0.1) benign(0.076) TCGA-BH-A0HP-01 X 154327650 154327650 G A BRCC3 Silent p.Q203Q 0.17 TCGA-BH-A0HP-01 X 17739605 17739605 G C NHS Missense_Mutation p.Q299H 0.03 tolerated(0.52) probably_damaging(0.997) TCGA-BH-A0HP-01 X 18936866 18936866 G A PHKA2 Silent p.F690F 0.23 TCGA-BH-A0HP-01 X 35820278 35820278 C G MAGEB16 5'UTR 0.22 TCGA-BH-A0HP-01 X 47307767 47307767 C T ZNF41 Missense_Mutation p.E468K 0.08 tolerated(0.28) benign(0.088) TCGA-BH-A0HP-01 X 48759632 48759632 G A PQBP1 Missense_Mutation p.D139N 0.25 tolerated(0.26) benign(0.357) TCGA-BH-A0HP-01 X 50052923 50052923 C T CCNB3 Missense_Mutation p.S585L 0.18 tolerated(1) benign(0.007) TCGA-BH-A0HP-01 X 51488761 51488761 C T GSPT2 3'UTR 0.32 TCGA-BH-A0HP-01 X 54319370 54319370 G A WNK3 Missense_Mutation p.S663L 0.24 tolerated(0.15) benign(0.005) TCGA-BH-A0HP-01 X 69652507 69652507 C T GDPD2 Nonsense_Mutation p.Q563* 0.25 TCGA-BH-A0HP-01 X 70607298 70607298 G A TAF1 Missense_Mutation p.R825Q 0.21 deleterious(0) benign(0.364) TCGA-BH-A0HP-01 X 99662072 99662072 G C PCDH19 Missense_Mutation p.I508M 0.21 deleterious(0.01) probably_damaging(0.936) TCGA-BH-A0RX-01 10 106139944 106139944 G C CCDC147 Missense_Mutation p.R444P 0.05 deleterious(0.04) possibly_damaging(0.866) TCGA-BH-A0RX-01 10 71175895 71175895 C T TACR2 Missense_Mutation p.R62Q 0.10 tolerated(0.16) benign(0.023) TCGA-BH-A0RX-01 11 117057334 117057334 C T SIDT2 Nonsense_Mutation p.R333* 0.05 TCGA-BH-A0RX-01 11 46406905 46406905 C T CHRM4 Silent p.T401T 0.17 TCGA-BH-A0RX-01 12 66717817 66717817 G T HELB Missense_Mutation p.R784S 0.14 deleterious(0) probably_damaging(0.938) TCGA-BH-A0RX-01 12 81242046 81242046 G A LIN7A Missense_Mutation p.A86V 0.08 deleterious(0.01) benign(0.015) TCGA-BH-A0RX-01 14 71543011 71543011 G A PCNX Missense_Mutation p.V1738M 0.16 tolerated(0.24) benign(0.18) TCGA-BH-A0RX-01 15 51980501 51980501 G A SCG3 Missense_Mutation p.A148T 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A0RX-01 16 14029554 14029554 C T ERCC4 Missense_Mutation p.R589W 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0RX-01 16 19661701 19661701 C T C16orf62 Intron 0.09 TCGA-BH-A0RX-01 16 52484330 52484330 C T TOX3 Silent p.Q179Q 0.05 TCGA-BH-A0RX-01 17 11461156 11461156 C A SHISA6 Silent p.I397I 0.19 TCGA-BH-A0RX-01 17 32906191 32906191 C T C17orf102 Missense_Mutation p.D37N 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.908) TCGA-BH-A0RX-01 17 32906192 32906192 T A C17orf102 Silent p.V36V 0.24 TCGA-BH-A0RX-01 17 43473379 43473379 A G ARHGAP27 Missense_Mutation p.S445P 0.14 deleterious(0) possibly_damaging(0.769) TCGA-BH-A0RX-01 17 56650661 56650661 G A TEX14 Missense_Mutation p.T1177M 0.05 deleterious(0.02) benign(0.133) TCGA-BH-A0RX-01 17 74527737 74527737 G A CYGB Silent p.F60F 0.16 TCGA-BH-A0RX-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.14 TCGA-BH-A0RX-01 19 12962941 12962941 G A MAST1 Missense_Mutation p.E297K 0.04 deleterious(0) probably_damaging(0.969) TCGA-BH-A0RX-01 19 48244582 48244582 G A EHD2 Missense_Mutation p.A509T 0.09 deleterious(0) probably_damaging(0.996) TCGA-BH-A0RX-01 1 109727733 109727733 C T KIAA1324 Missense_Mutation p.T340M 0.14 deleterious(0) probably_damaging(0.914) TCGA-BH-A0RX-01 1 145608467 145608467 C T POLR3C Missense_Mutation p.G114S 0.14 deleterious(0.01) probably_damaging(1) TCGA-BH-A0RX-01 1 147381156 147381156 G A GJA8 Silent p.T358T 0.05 TCGA-BH-A0RX-01 1 151342361 151342361 C G SELENBP1 Intron 0.12 TCGA-BH-A0RX-01 1 160389104 160389104 C T VANGL2 Missense_Mutation p.R169C 0.16 deleterious(0) probably_damaging(0.999) TCGA-BH-A0RX-01 1 185970544 185970549 ATAAAG - HMCN1 In_Frame_Del p.K1396_D1397del 0.09 TCGA-BH-A0RX-01 1 27106480 27106481 - A ARID1A Nonsense_Mutation p.Y2031* 0.09 TCGA-BH-A0RX-01 21 22696711 22696711 G A NCAM2 Missense_Mutation p.A210T 0.15 tolerated(1) benign(0.008) TCGA-BH-A0RX-01 2 203591033 203591036 AAAG - FAM117B Frame_Shift_Del p.E304Dfs*27 0.12 TCGA-BH-A0RX-01 3 137813715 137813715 G A DZIP1L Missense_Mutation p.R233W 0.10 deleterious(0.04) benign(0.247) TCGA-BH-A0RX-01 3 147108957 147108957 C T ZIC4 Silent p.S305S 0.24 TCGA-BH-A0RX-01 5 177649395 177649395 C T PHYKPL Silent p.A296A 0.05 TCGA-BH-A0RX-01 6 160218468 160218468 G A MRPL18 Missense_Mutation p.R130Q 0.07 tolerated(0.05) probably_damaging(0.944) TCGA-BH-A0RX-01 6 30671782 30671782 G A MDC1 Silent p.A1726A 0.05 TCGA-BH-A0RX-01 6 30916437 30916437 C T DPCR1 Missense_Mutation p.H66Y 0.06 deleterious(0) possibly_damaging(0.893) TCGA-BH-A0RX-01 6 33655053 33655053 G A ITPR3 Silent p.S2042S 0.18 TCGA-BH-A0RX-01 7 102453913 102453913 C T FBXL13 Missense_Mutation p.R695H 0.09 tolerated(0.54) benign(0.002) TCGA-BH-A0RX-01 7 127999864 127999864 C T PRRT4 Missense_Mutation p.R61Q 0.08 deleterious_low_confidence(0) unknown(0) TCGA-BH-A0RX-01 7 129658345 129658345 A C ZC3HC1 3'UTR 0.11 TCGA-BH-A0RX-01 7 148485718 148485718 C G CUL1 Missense_Mutation p.L517V 0.07 deleterious(0) probably_damaging(0.968) TCGA-BH-A0RX-01 7 2987388 2987388 G A CARD11 Missense_Mutation p.T14M 0.14 deleterious_low_confidence(0.04) benign(0.068) TCGA-BH-A0RX-01 7 82997122 82997122 G A SEMA3E Missense_Mutation p.S703L 0.12 tolerated(0.26) benign(0.001) TCGA-BH-A0RX-01 7 86469059 86469059 C T GRM3 Silent p.Y743Y 0.11 TCGA-BH-A0RX-01 7 91708974 91708974 T A AKAP9 Missense_Mutation p.S2509R 0.07 possibly_damaging(0.877) TCGA-BH-A0RX-01 8 143998611 143998611 G A CYP11B2 Missense_Mutation p.R87C 0.06 tolerated(0.08) possibly_damaging(0.67) TCGA-BH-A0RX-01 8 53038615 53038615 C T ST18 Missense_Mutation p.G918R 0.17 deleterious(0.04) possibly_damaging(0.824) TCGA-BH-A0RX-01 8 59727964 59727964 T C TOX Missense_Mutation p.Q442R 0.06 tolerated(0.14) possibly_damaging(0.885) TCGA-BH-A0RX-01 8 65528496 65528496 A G CYP7B1 Missense_Mutation p.I201T 0.08 tolerated(0.62) benign(0) TCGA-BH-A0RX-01 X 120007725 120007725 T A CT47B1 3'UTR 0.05 TCGA-BH-A0RX-01 X 134707908 134707908 T C DDX26B Silent p.R517R 0.08 TCGA-BH-A0RX-01 X 77151002 77151002 A G MAGT1 Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0) benign(0.014) TCGA-BH-A0RX-01 X 77529203 77529203 C G CYSLTR1 Missense_Mutation p.C14S 0.06 tolerated(0.29) benign(0.282) TCGA-BH-A0W3-01 10 88703812 88703812 G A MMRN2 Silent p.P243P 0.30 TCGA-BH-A0W3-01 11 116732018 116732018 G - SIK3 Frame_Shift_Del p.M694* 0.52 TCGA-BH-A0W3-01 11 64064601 64064601 T A KCNK4 Missense_Mutation p.N108K 0.59 deleterious(0.03) probably_damaging(0.994) TCGA-BH-A0W3-01 11 72290428 72290428 C G PDE2A Splice_Site p.X753_splice 0.38 TCGA-BH-A0W3-01 11 72290595 72290595 C T PDE2A Missense_Mutation p.D747N 0.44 tolerated(0.17) benign(0.093) TCGA-BH-A0W3-01 12 122212588 122212588 G A TMEM120B Missense_Mutation p.R266Q 0.56 deleterious(0) benign(0.172) TCGA-BH-A0W3-01 12 8759472 8759472 G T AICDA Missense_Mutation p.L49I 0.28 tolerated(0.07) benign(0.11) TCGA-BH-A0W3-01 12 96653588 96653588 C A ELK3 Missense_Mutation p.P361Q 0.52 deleterious(0) probably_damaging(1) TCGA-BH-A0W3-01 13 109617223 109617223 G T MYO16 Missense_Mutation p.C759F 0.24 tolerated(0.58) benign(0.042) TCGA-BH-A0W3-01 13 47279264 47279264 G A LRCH1 Missense_Mutation p.A488T 0.65 tolerated(0.45) benign(0.003) TCGA-BH-A0W3-01 13 76370783 76370783 A G LMO7 5'UTR 0.47 TCGA-BH-A0W3-01 15 43939311 43939311 G C CATSPER2 Missense_Mutation p.L109V 0.40 tolerated(0.21) benign(0.066) TCGA-BH-A0W3-01 17 12901771 12901771 G A ELAC2 Missense_Mutation p.P493L 0.45 deleterious(0) probably_damaging(0.999) TCGA-BH-A0W3-01 20 33568852 33568852 C T MYH7B Silent p.S214S 0.58 TCGA-BH-A0W3-01 22 16448932 16448932 C T OR11H1 Silent p.L291L 0.37 TCGA-BH-A0W3-01 2 125521339 125521339 C T CNTNAP5 Silent p.A774A 0.04 TCGA-BH-A0W3-01 2 166245338 166245338 C T SCN2A Silent p.Y1674Y 0.45 TCGA-BH-A0W3-01 3 148930395 148930395 G A CP Silent p.T79T 0.45 TCGA-BH-A0W3-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.52 deleterious(0.04) probably_damaging(0.96) TCGA-BH-A0W3-01 4 123850227 123850227 T C SPATA5 Silent p.P107P 0.10 TCGA-BH-A0W3-01 5 132585181 132585181 A T FSTL4 Missense_Mutation p.V272D 0.38 deleterious(0) possibly_damaging(0.892) TCGA-BH-A0W3-01 7 141427142 141427142 A T WEE2 Silent p.A477A 0.39 TCGA-BH-A0W3-01 7 142013464 142013464 C T TRBV4-1 Silent p.L107L 0.51 TCGA-BH-A0W3-01 7 99631717 99631717 C G ZKSCAN1 Missense_Mutation p.S530C 0.37 deleterious(0) possibly_damaging(0.789) TCGA-BH-A0W4-01 10 126655277 126655277 A T ZRANB1 Missense_Mutation p.D310V 0.23 deleterious(0) benign(0.162) TCGA-BH-A0W4-01 10 43178874 43178874 C T AL022344.4 RNA 0.35 TCGA-BH-A0W4-01 10 47087301 47087301 C G NPY4R Missense_Mutation p.P173R 0.11 deleterious(0) probably_damaging(1) TCGA-BH-A0W4-01 10 55626527 55626527 C A PCDH15 Nonsense_Mutation p.E1198* 0.24 TCGA-BH-A0W4-01 11 4594539 4594539 A G C11orf40 Missense_Mutation p.V102A 0.23 deleterious_low_confidence(0) benign(0.294) TCGA-BH-A0W4-01 11 607184 607184 C T PHRF1 Silent p.N575N 0.21 TCGA-BH-A0W4-01 11 63585750 63585750 G A C11orf84 Missense_Mutation p.E174K 0.24 deleterious(0) probably_damaging(0.998) TCGA-BH-A0W4-01 11 85977150 85977150 T C EED Missense_Mutation p.I251T 0.22 deleterious(0) probably_damaging(0.987) TCGA-BH-A0W4-01 12 105543489 105543489 C T KIAA1033 Nonsense_Mutation p.R871* 0.13 TCGA-BH-A0W4-01 12 12870900 12870901 CG - CDKN1B Frame_Shift_Del p.R43Gfs*81 0.28 TCGA-BH-A0W4-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.58 deleterious(0) probably_damaging(0.999) TCGA-BH-A0W4-01 14 106173747 106173747 C T IGHA1 Missense_Mutation p.E274K 0.12 tolerated(0.19) benign(0.069) TCGA-BH-A0W4-01 14 64518739 64518739 A G SYNE2 Missense_Mutation p.E2703G 0.07 possibly_damaging(0.789) TCGA-BH-A0W4-01 14 91113146 91113146 C G TTC7B Intron 0.33 TCGA-BH-A0W4-01 15 69003905 69003905 G T CORO2B Missense_Mutation p.G170C 0.25 deleterious(0.01) benign(0.321) TCGA-BH-A0W4-01 15 85325994 85325994 A - ZNF592 Frame_Shift_Del p.I30Sfs*37 0.21 TCGA-BH-A0W4-01 16 67645919 67645919 C T CTCF Missense_Mutation p.R283C 0.37 deleterious(0) probably_damaging(1) TCGA-BH-A0W4-01 17 42964087 42964087 C A EFTUD2 Missense_Mutation p.G46V 0.25 tolerated(0.28) benign(0.001) TCGA-BH-A0W4-01 19 3151786 3151786 C G GNA15 Silent p.T189T 0.29 TCGA-BH-A0W4-01 19 9296535 9296535 C T OR7D2 Silent p.F26F 0.23 TCGA-BH-A0W4-01 1 101196752 101196752 A G VCAM1 Splice_Site p.X402_splice 0.44 TCGA-BH-A0W4-01 1 1337574 1337574 G C MRPL20 Missense_Mutation p.F113L 0.11 deleterious(0) probably_damaging(0.96) TCGA-BH-A0W4-01 1 1653040 1653040 T A CDK11A Missense_Mutation p.E74D 0.22 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-BH-A0W4-01 1 197111948 197111948 A C ASPM Missense_Mutation p.I478M 0.12 tolerated(0.11) benign(0.336) TCGA-BH-A0W4-01 1 24077576 24077576 A G TCEB3 Missense_Mutation p.M187V 0.21 tolerated(0.49) benign(0) TCGA-BH-A0W4-01 21 38308910 38308910 C T HLCS Missense_Mutation p.E279K 0.23 deleterious(0.04) benign(0.002) TCGA-BH-A0W4-01 22 18845942 18845942 G C BCRP7 Intron 0.12 TCGA-BH-A0W4-01 2 242155637 242155637 C T ANO7 Silent p.D706D 0.30 TCGA-BH-A0W4-01 2 97364429 97364429 T - FER1L5 RNA 0.35 TCGA-BH-A0W4-01 3 126445927 126445927 G A CHCHD6 Missense_Mutation p.E32K 0.27 deleterious(0) possibly_damaging(0.831) TCGA-BH-A0W4-01 3 189692391 189692391 C T LEPREL1 Missense_Mutation p.V470I 0.23 deleterious(0.02) possibly_damaging(0.459) TCGA-BH-A0W4-01 3 195778686 195778686 A C TFRC 3'UTR 0.36 TCGA-BH-A0W4-01 3 4726865 4726865 A G ITPR1 Missense_Mutation p.E1211G 0.28 deleterious(0.04) possibly_damaging(0.839) TCGA-BH-A0W4-01 3 54959240 54959240 C T LRTM1 Missense_Mutation p.E4K 0.24 tolerated(0.73) benign(0.026) TCGA-BH-A0W4-01 4 164247028 164247028 T G NPY1R Missense_Mutation p.I227L 0.44 deleterious(0.01) possibly_damaging(0.893) TCGA-BH-A0W4-01 5 139939900 139939900 T C APBB3 Missense_Mutation p.M415V 0.42 tolerated(0.09) probably_damaging(0.941) TCGA-BH-A0W4-01 5 39394418 39394418 G A DAB2 Missense_Mutation p.S2F 0.24 deleterious(0) probably_damaging(0.99) TCGA-BH-A0W4-01 7 116371755 116371755 C G MET Missense_Mutation p.R412G 0.24 tolerated(0.15) possibly_damaging(0.508) TCGA-BH-A0W4-01 7 151573642 151573642 C T PRKAG2 Missense_Mutation p.G22S 0.27 tolerated_low_confidence(0.89) benign(0.006) TCGA-BH-A0W4-01 7 37256293 37256293 G A ELMO1 Missense_Mutation p.A263V 0.21 tolerated(0.22) possibly_damaging(0.574) TCGA-BH-A0W4-01 9 140946546 140946546 G A CACNA1B Missense_Mutation p.G1238E 0.04 deleterious(0) possibly_damaging(0.475) TCGA-BH-A0W4-01 X 70598836 70598836 C T TAF1 Missense_Mutation p.P459S 0.30 deleterious(0) probably_damaging(0.999) TCGA-BH-A0W5-01 11 18764029 18764029 G A PTPN5 Missense_Mutation p.P169S 0.25 tolerated(0.48) benign(0.004) TCGA-BH-A0W5-01 11 56086087 56086087 C A OR8K3 Missense_Mutation p.A102D 0.05 deleterious_low_confidence(0.01) benign(0.061) TCGA-BH-A0W5-01 11 57003835 57003835 G A APLNR Missense_Mutation p.T215I 0.15 tolerated(0.42) benign(0.001) TCGA-BH-A0W5-01 12 101505394 101505394 G A ANO4 Missense_Mutation p.A751T 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0W5-01 12 121431482 121431482 G A HNF1A Missense_Mutation p.R229Q 0.12 deleterious(0) possibly_damaging(0.882) TCGA-BH-A0W5-01 14 92505990 92505990 G C TRIP11 Missense_Mutation p.Q14E 0.15 tolerated(0.06) unknown(0) TCGA-BH-A0W5-01 15 71125333 71125333 G A LARP6 Silent p.N178N 0.12 TCGA-BH-A0W5-01 16 57794309 57794311 TTC - KIFC3 In_Frame_Del p.K750del 0.17 TCGA-BH-A0W5-01 16 67645923 67645923 A C CTCF Missense_Mutation p.H284P 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A0W5-01 17 33520540 33520540 C T SLC35G3 Missense_Mutation p.A263T 0.13 deleterious(0.02) benign(0.038) TCGA-BH-A0W5-01 17 38510611 38510611 G A RARA Missense_Mutation p.G289R 0.05 deleterious(0) probably_damaging(0.999) TCGA-BH-A0W5-01 19 40316666 40316666 G C DYRK1B Missense_Mutation p.Q527E 0.21 tolerated_low_confidence(0.28) benign(0.019) TCGA-BH-A0W5-01 19 4429539 4429539 A G CHAF1A Missense_Mutation p.Y570C 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A0W5-01 1 238053448 238053448 C A ZP4 Missense_Mutation p.Q68H 0.16 deleterious(0.04) benign(0.052) TCGA-BH-A0W5-01 1 45966053 45966053 T C MMACHC Missense_Mutation p.C17R 0.13 tolerated(0.47) possibly_damaging(0.568) TCGA-BH-A0W5-01 20 13280130 13280130 C T ISM1 3'UTR 0.44 TCGA-BH-A0W5-01 2 167159635 167159635 A G SCN9A Missense_Mutation p.I289T 0.15 tolerated(0.44) benign(0.076) TCGA-BH-A0W5-01 3 164908518 164908518 A G SLITRK3 Missense_Mutation p.I34T 0.17 tolerated(0.28) benign(0.003) TCGA-BH-A0W5-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.14 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0W5-01 5 56177500 56177500 A T MAP3K1 Nonsense_Mutation p.R825* 0.25 TCGA-BH-A0W5-01 5 56178253 56178253 C - MAP3K1 Frame_Shift_Del p.S1077Qfs*5 0.11 TCGA-BH-A0W5-01 6 28227597 28227597 G A NKAPL Missense_Mutation p.E150K 0.28 deleterious(0) unknown(0) TCGA-BH-A0W5-01 6 35436736 35436736 G A RPL10A Silent p.T31T 0.11 TCGA-BH-A0W5-01 6 90718370 90718370 G A BACH2 Missense_Mutation p.A65V 0.07 tolerated(0.2) benign(0.013) TCGA-BH-A0W5-01 7 100677967 100677967 C G MUC17 Missense_Mutation p.S1090R 0.12 probably_damaging(0.988) TCGA-BH-A0W5-01 8 69033241 69033241 C A PREX2 Missense_Mutation p.S1227R 0.07 tolerated(0.16) benign(0.386) TCGA-BH-A0W5-01 9 27228229 27228229 C T TEK Missense_Mutation p.R1076W 0.09 deleterious(0) probably_damaging(0.992) TCGA-BH-A0W5-01 X 119603095 119603095 G T LAMP2 5'UTR 0.33 TCGA-BH-A0W5-01 X 129206310 129206310 G A ELF4 Silent p.P141P 0.15 TCGA-BH-A0W5-01 X 142596939 142596939 G A SPANXN3 Missense_Mutation p.T44I 0.04 tolerated(0.16) possibly_damaging(0.521) TCGA-BH-A0W5-01 X 30261121 30261121 C A MAGEB4 Missense_Mutation p.A290D 0.13 deleterious(0.01) benign(0.414) TCGA-BH-A0W7-01 10 101567200 101567200 G C ABCC2 Missense_Mutation p.K530N 0.24 tolerated(0.37) benign(0.029) TCGA-BH-A0W7-01 10 114057824 114057824 C T TECTB Intron 0.22 TCGA-BH-A0W7-01 10 5798685 5798685 C G FAM208B Nonsense_Mutation p.S2239* 0.18 TCGA-BH-A0W7-01 10 7217979 7217979 A G SFMBT2 Missense_Mutation p.C653R 0.28 deleterious(0) probably_damaging(0.998) TCGA-BH-A0W7-01 10 74890577 74890577 C T NUDT13 Silent p.F325F 0.24 TCGA-BH-A0W7-01 10 88768336 88768336 G A RP11-96C23.10 3'Flank 0.05 TCGA-BH-A0W7-01 10 95380536 95380536 G A PDE6C Missense_Mutation p.E210K 0.22 deleterious(0.02) possibly_damaging(0.879) TCGA-BH-A0W7-01 10 98303890 98303890 G A TM9SF3 Silent p.F376F 0.19 TCGA-BH-A0W7-01 11 101324393 101324393 C T TRPC6 Missense_Mutation p.E878K 0.24 tolerated(0.08) benign(0.242) TCGA-BH-A0W7-01 11 101362353 101362353 C T TRPC6 Silent p.Q354Q 0.08 TCGA-BH-A0W7-01 11 114401498 114401498 C G NXPE1 5'UTR 0.21 TCGA-BH-A0W7-01 11 13443293 13443293 C T BTBD10 Missense_Mutation p.R65Q 0.25 tolerated_low_confidence(0.09) probably_damaging(0.99) TCGA-BH-A0W7-01 11 4510827 4510827 C G OR52K1 Missense_Mutation p.Q233E 0.22 deleterious(0.03) benign(0.155) TCGA-BH-A0W7-01 11 55563592 55563592 C G OR5D14 Missense_Mutation p.I187M 0.16 deleterious(0.02) benign(0.209) TCGA-BH-A0W7-01 11 56114285 56114285 C T OR8K1 Silent p.F257F 0.10 TCGA-BH-A0W7-01 11 619547 619547 G A CDHR5 Missense_Mutation p.S407L 0.04 deleterious(0) probably_damaging(0.943) TCGA-BH-A0W7-01 11 62287266 62287266 C T AHNAK Missense_Mutation p.E4875K 0.19 possibly_damaging(0.843) TCGA-BH-A0W7-01 11 6588268 6588268 G A DNHD1 Silent p.E3843E 0.04 TCGA-BH-A0W7-01 11 93431181 93431181 G C KIAA1731 Missense_Mutation p.D1035H 0.14 deleterious(0) possibly_damaging(0.847) TCGA-BH-A0W7-01 11 94501722 94501722 G A AMOTL1 Silent p.V15V 0.14 TCGA-BH-A0W7-01 11 986843 986843 G A AP2A2 Missense_Mutation p.E341K 0.18 deleterious(0) probably_damaging(0.923) TCGA-BH-A0W7-01 12 105557985 105557985 G A KIAA1033 Missense_Mutation p.R1085K 0.15 tolerated(0.76) benign(0.01) TCGA-BH-A0W7-01 12 121426669 121426669 G T HNF1A Missense_Mutation p.K120N 0.29 deleterious(0.02) possibly_damaging(0.861) TCGA-BH-A0W7-01 12 131476808 131476808 C T GPR133 Silent p.I279I 0.20 TCGA-BH-A0W7-01 12 21054322 21054322 G C SLCO1B3 Missense_Mutation p.D596H 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 12 32491861 32491861 C T BICD1 Silent p.F904F 0.21 TCGA-BH-A0W7-01 12 38712174 38712174 A C ALG10B Missense_Mutation p.M95L 0.26 tolerated(0.39) benign(0.014) TCGA-BH-A0W7-01 12 49359822 49359822 G A WNT10B 3'UTR 0.32 TCGA-BH-A0W7-01 12 5155077 5155077 C T KCNA5 Silent p.V588V 0.58 TCGA-BH-A0W7-01 12 51901444 51901444 C A SLC4A8 3'UTR 0.32 TCGA-BH-A0W7-01 12 52760833 52760833 C T KRT85 Silent p.V119V 0.06 TCGA-BH-A0W7-01 12 52992731 52992731 C T KRT72 Missense_Mutation p.D198N 0.29 deleterious(0.02) probably_damaging(0.917) TCGA-BH-A0W7-01 12 53662952 53662952 G C ESPL1 Missense_Mutation p.E76Q 0.23 tolerated(0.13) benign(0.103) TCGA-BH-A0W7-01 12 56490901 56490901 C G ERBB3 Missense_Mutation p.L783V 0.19 tolerated(0.28) probably_damaging(0.995) TCGA-BH-A0W7-01 12 56531365 56531365 C T ESYT1 Missense_Mutation p.S684L 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 12 66308905 66308905 C T HMGA2 Intron 0.23 TCGA-BH-A0W7-01 12 71976250 71976250 G C LGR5 Missense_Mutation p.E523Q 0.21 deleterious(0.04) possibly_damaging(0.904) TCGA-BH-A0W7-01 12 73012710 73012710 C G TRHDE Missense_Mutation p.I742M 0.28 tolerated(0.06) benign(0.028) TCGA-BH-A0W7-01 12 80650138 80650138 C T OTOGL Nonsense_Mutation p.Q528* 0.18 TCGA-BH-A0W7-01 12 80650216 80650216 C A OTOGL Missense_Mutation p.P554T 0.16 tolerated(0.28) benign(0.264) TCGA-BH-A0W7-01 12 93157886 93157886 G A PLEKHG7 Missense_Mutation p.E284K 0.03 deleterious(0) benign(0.137) TCGA-BH-A0W7-01 13 31719870 31719870 C G HSPH1 Missense_Mutation p.D472H 0.25 deleterious(0) probably_damaging(0.978) TCGA-BH-A0W7-01 13 49580293 49580293 G C FNDC3A 5'UTR 0.38 TCGA-BH-A0W7-01 14 20443846 20443846 C A OR4K15 Missense_Mutation p.L57I 0.21 tolerated(0.38) benign(0.005) TCGA-BH-A0W7-01 14 21863271 21863271 C A CHD8 Silent p.V1730V 0.13 TCGA-BH-A0W7-01 14 24030428 24030428 C T AP1G2 Intron 0.12 TCGA-BH-A0W7-01 14 24528390 24528390 G C LRRC16B Missense_Mutation p.E540Q 0.06 deleterious(0) probably_damaging(0.943) TCGA-BH-A0W7-01 14 24886593 24886593 C T NYNRIN Silent p.L1880L 0.15 TCGA-BH-A0W7-01 14 45675365 45675365 C A MIS18BP1 Missense_Mutation p.C1054F 0.04 tolerated(0.18) possibly_damaging(0.601) TCGA-BH-A0W7-01 14 71492886 71492886 G C PCNX Missense_Mutation p.C1079S 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-BH-A0W7-01 14 79175685 79175685 C T NRXN3 Silent p.I76I 0.03 TCGA-BH-A0W7-01 14 94964318 94964318 G A SERPINA12 Silent p.F139F 0.17 TCGA-BH-A0W7-01 15 23441156 23441156 C G AC100757.1 5'Flank 0.06 TCGA-BH-A0W7-01 15 27188366 27188366 C T GABRA5 Silent p.V294V 0.15 TCGA-BH-A0W7-01 15 33261669 33261669 C G FMN1 Missense_Mutation p.E522Q 0.19 deleterious(0) unknown(0) TCGA-BH-A0W7-01 15 33952547 33952547 G A RYR3 Silent p.V1515V 0.27 TCGA-BH-A0W7-01 15 42104774 42104774 G A MAPKBP1 Missense_Mutation p.E187K 0.19 deleterious(0.01) benign(0.219) TCGA-BH-A0W7-01 15 43991353 43991353 C G CKMT1A 3'UTR 0.24 TCGA-BH-A0W7-01 15 78475050 78475050 G A ACSBG1 Silent p.Y247Y 0.23 TCGA-BH-A0W7-01 15 84651757 84651757 C T ADAMTSL3 Missense_Mutation p.A1126V 0.27 tolerated(0.07) benign(0.12) TCGA-BH-A0W7-01 15 86286897 86286897 C T AKAP13 Missense_Mutation p.H2749Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-BH-A0W7-01 15 86286967 86286967 C T AKAP13 Missense_Mutation p.S2772F 0.17 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-BH-A0W7-01 15 86286973 86286973 C G AKAP13 Missense_Mutation p.S2774C 0.15 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-BH-A0W7-01 16 12059075 12059075 C T TNFRSF17 5'UTR 0.11 TCGA-BH-A0W7-01 16 15127253 15127253 G A PDXDC1 Silent p.S603S 0.24 TCGA-BH-A0W7-01 16 20043114 20043114 G C GPR139 Missense_Mutation p.I335M 0.13 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-BH-A0W7-01 16 23102023 23102023 G A USP31 Missense_Mutation p.S446F 0.05 tolerated(0.19) benign(0.005) TCGA-BH-A0W7-01 16 27238139 27238139 G A NSMCE1 Silent p.L168L 0.25 TCGA-BH-A0W7-01 16 28109862 28109862 G C XPO6 Silent p.L1125L 0.15 TCGA-BH-A0W7-01 16 2988218 2988218 C T FLYWCH1 Missense_Mutation p.S603F 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A0W7-01 16 3452196 3452196 C T ZNF174 Silent p.L64L 0.17 TCGA-BH-A0W7-01 16 3778745 3778745 G C CREBBP Missense_Mutation p.I2101M 0.17 unknown(0) TCGA-BH-A0W7-01 16 69370510 69370510 G A COG8 Silent p.L161L 0.24 TCGA-BH-A0W7-01 16 70852401 70852401 G A HYDIN Silent p.I4834I 0.21 TCGA-BH-A0W7-01 16 89351835 89351835 C G ANKRD11 Missense_Mutation p.R372T 0.05 possibly_damaging(0.879) TCGA-BH-A0W7-01 17 12032510 12032510 C T MAP2K4 Nonsense_Mutation p.Q316* 0.31 TCGA-BH-A0W7-01 17 26495572 26495572 G A NLK Silent p.L312L 0.19 TCGA-BH-A0W7-01 17 29226322 29226322 G A TEFM Silent p.F316F 0.21 TCGA-BH-A0W7-01 17 3101617 3101617 G C OR1A2 Missense_Mutation p.D269H 0.32 deleterious(0.01) benign(0.35) TCGA-BH-A0W7-01 17 39183074 39183074 C T KRTAP1-5 Missense_Mutation p.V112M 0.13 tolerated(0.13) probably_damaging(0.996) TCGA-BH-A0W7-01 17 39919445 39919445 C G JUP Silent p.V429V 0.21 TCGA-BH-A0W7-01 17 41341611 41341611 G A NBR1 Missense_Mutation p.E163K 0.20 deleterious(0) probably_damaging(0.999) TCGA-BH-A0W7-01 17 4200108 4200108 C T UBE2G1 Missense_Mutation p.E51K 0.05 deleterious(0) probably_damaging(0.941) TCGA-BH-A0W7-01 17 42164964 42164964 C T HDAC5 Missense_Mutation p.G568E 0.35 tolerated(0.29) benign(0.005) TCGA-BH-A0W7-01 17 46847087 46847087 C T TTLL6 Intron 0.22 TCGA-BH-A0W7-01 17 56540556 56540556 G A HSF5 Nonsense_Mutation p.Q377* 0.19 TCGA-BH-A0W7-01 17 59118217 59118217 G A BCAS3 Missense_Mutation p.D680N 0.20 tolerated(0.07) probably_damaging(0.996) TCGA-BH-A0W7-01 17 74392693 74392693 C T UBE2O Silent p.V775V 0.29 TCGA-BH-A0W7-01 17 76116778 76116778 G A TMC6 Silent p.F557F 0.26 TCGA-BH-A0W7-01 17 76455115 76455115 C T DNAH17 Missense_Mutation p.E3263K 0.23 benign(0.012) TCGA-BH-A0W7-01 17 7671380 7671380 G T DNAH2 Splice_Site p.X1279_splice 0.18 TCGA-BH-A0W7-01 17 9559717 9559717 C T USP43 Intron 0.24 TCGA-BH-A0W7-01 18 52896088 52896088 C G TCF4 Missense_Mutation p.Q725H 0.20 deleterious(0.02) possibly_damaging(0.603) TCGA-BH-A0W7-01 18 59483034 59483034 C T RNF152 3'UTR 0.05 TCGA-BH-A0W7-01 18 9588772 9588772 T C PPP4R1 Silent p.P125P 0.25 TCGA-BH-A0W7-01 19 12864087 12864087 G A BEST2 Missense_Mutation p.E56K 0.10 tolerated(0.08) benign(0.311) TCGA-BH-A0W7-01 19 12883461 12883461 G A HOOK2 Missense_Mutation p.S141L 0.03 deleterious(0.01) possibly_damaging(0.783) TCGA-BH-A0W7-01 19 14513553 14513553 C T CD97 Missense_Mutation p.S443F 0.23 deleterious(0) possibly_damaging(0.878) TCGA-BH-A0W7-01 19 14991294 14991294 G C OR7A17 Missense_Mutation p.L292V 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A0W7-01 19 17634172 17634172 C T FAM129C 5'UTR 0.24 TCGA-BH-A0W7-01 19 3118919 3118919 C T GNA11 Intron 0.23 TCGA-BH-A0W7-01 19 37975503 37975503 G A ZNF570 Missense_Mutation p.E327K 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-BH-A0W7-01 19 41386449 41386449 C T CYP2A7 Missense_Mutation p.R143Q 0.11 deleterious(0.03) possibly_damaging(0.869) TCGA-BH-A0W7-01 19 43420539 43420539 G C PSG6 Silent p.V55V 0.19 TCGA-BH-A0W7-01 19 43430867 43430867 C T PSG7 Silent p.P237P 0.20 TCGA-BH-A0W7-01 19 49001389 49001389 C G LMTK3 Silent p.L1008L 0.18 TCGA-BH-A0W7-01 19 49398364 49398364 G A TULP2 Silent p.S135S 0.15 TCGA-BH-A0W7-01 19 49398380 49398380 C A TULP2 Missense_Mutation p.W130L 0.12 tolerated(0.4) benign(0.004) TCGA-BH-A0W7-01 19 54610364 54610364 G C TFPT Missense_Mutation p.S252C 0.24 deleterious_low_confidence(0.03) benign(0.163) TCGA-BH-A0W7-01 19 55949000 55949000 C T SHISA7 Silent p.L316L 0.10 TCGA-BH-A0W7-01 19 810756 810756 T G PTBP1 Missense_Mutation p.I535S 0.21 deleterious(0) probably_damaging(0.962) TCGA-BH-A0W7-01 1 100598368 100598368 C G SASS6 Translation_Start_Site p.M1? 0.17 deleterious(0) probably_damaging(0.92) TCGA-BH-A0W7-01 1 12374365 12374365 C G VPS13D Missense_Mutation p.Q2377E 0.17 probably_damaging(0.932) TCGA-BH-A0W7-01 1 1326971 1326971 C G CCNL2 Intron 0.21 TCGA-BH-A0W7-01 1 149858776 149858776 C G HIST2H2AC Silent p.L84L 0.17 TCGA-BH-A0W7-01 1 152130351 152130351 C G RPTN Silent p.L5L 0.29 TCGA-BH-A0W7-01 1 153785831 153785831 C G GATAD2B Missense_Mutation p.K438N 0.23 tolerated(0.35) benign(0.115) TCGA-BH-A0W7-01 1 170008430 170008430 C G KIFAP3 Splice_Site p.X107_splice 0.19 TCGA-BH-A0W7-01 1 206318434 206318434 G C CTSE Missense_Mutation p.Q64H 0.04 tolerated(0.12) possibly_damaging(0.652) TCGA-BH-A0W7-01 1 209956454 209956454 G A C1orf74 Missense_Mutation p.L176F 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-BH-A0W7-01 1 24125001 24125001 G A GALE Intron 0.24 TCGA-BH-A0W7-01 1 248112192 248112192 C A OR2L8 Missense_Mutation p.F11L 0.25 deleterious(0) probably_damaging(0.915) TCGA-BH-A0W7-01 1 28975130 28975130 G T RNU11 RNA 0.20 TCGA-BH-A0W7-01 1 44878244 44878244 G C RNF220 Missense_Mutation p.D159H 0.07 deleterious(0.04) benign(0.259) TCGA-BH-A0W7-01 1 46763262 46763262 C G LRRC41 Silent p.L110L 0.24 TCGA-BH-A0W7-01 1 48865165 48865165 G A SPATA6 Missense_Mutation p.S213L 0.20 deleterious(0) probably_damaging(0.974) TCGA-BH-A0W7-01 1 57216852 57216852 C T C1orf168 Missense_Mutation p.E418K 0.16 tolerated(0.08) benign(0.164) TCGA-BH-A0W7-01 1 6292039 6292039 G C ICMT Missense_Mutation p.L199V 0.18 deleterious(0) probably_damaging(0.997) TCGA-BH-A0W7-01 1 63862213 63862213 T G ALG6 Missense_Mutation p.Y38D 0.20 deleterious(0) probably_damaging(0.998) TCGA-BH-A0W7-01 20 17389950 17389950 C T PCSK2 Missense_Mutation p.P196S 0.25 deleterious(0) possibly_damaging(0.601) TCGA-BH-A0W7-01 20 20484088 20484088 C G RALGAPA2 Missense_Mutation p.Q1705H 0.17 tolerated(0.21) possibly_damaging(0.739) TCGA-BH-A0W7-01 20 32161923 32161923 G C CBFA2T2 5'UTR 0.21 TCGA-BH-A0W7-01 20 34262522 34262522 G A NFS1 Silent p.I322I 0.19 TCGA-BH-A0W7-01 20 35395197 35395197 G A DSN1 Silent p.F159F 0.15 TCGA-BH-A0W7-01 20 368750 368750 G C TRIB3 Missense_Mutation p.Q32H 0.17 tolerated(0.11) benign(0.252) TCGA-BH-A0W7-01 20 480564 480564 C A CSNK2A1 Missense_Mutation p.K76N 0.16 deleterious(0) possibly_damaging(0.831) TCGA-BH-A0W7-01 20 55909851 55909851 G A SPO11 Missense_Mutation p.E186K 0.14 deleterious(0.02) possibly_damaging(0.788) TCGA-BH-A0W7-01 20 62192273 62192273 G A HELZ2 Missense_Mutation p.L2386F 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 21 30909633 30909633 G C GRIK1 Nonsense_Mutation p.S923* 0.22 TCGA-BH-A0W7-01 21 34668591 34668591 G C IL10RB Missense_Mutation p.E303Q 0.11 tolerated(0.22) benign(0.137) TCGA-BH-A0W7-01 21 34932323 34932323 C G SON Intron 0.18 TCGA-BH-A0W7-01 22 20905737 20905737 T A MED15 Silent p.S57S 0.05 TCGA-BH-A0W7-01 22 32019790 32019790 C T PISD Silent p.L33L 0.31 TCGA-BH-A0W7-01 2 102083311 102083311 G C RFX8 5'UTR 0.17 TCGA-BH-A0W7-01 2 152350316 152350316 C T NEB Silent p.V8215V 0.18 TCGA-BH-A0W7-01 2 152393657 152393657 G A NEB Missense_Mutation p.L7066F 0.04 probably_damaging(1) TCGA-BH-A0W7-01 2 179569097 179569097 C G TTN Silent p.L10000L 0.18 TCGA-BH-A0W7-01 2 187487072 187487072 G C ITGAV Missense_Mutation p.R108T 0.17 deleterious(0.02) probably_damaging(0.971) TCGA-BH-A0W7-01 2 190611197 190611197 C G ANKAR Missense_Mutation p.F1383L 0.18 tolerated_low_confidence(0.34) benign(0.005) TCGA-BH-A0W7-01 2 198495903 198495903 C G RFTN2 Missense_Mutation p.D254H 0.22 deleterious(0.02) probably_damaging(0.97) TCGA-BH-A0W7-01 2 200824060 200824060 G C C2orf47 Missense_Mutation p.E174Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-BH-A0W7-01 2 240500269 240500269 G A AC079612.1 Silent p.L50L 0.05 TCGA-BH-A0W7-01 2 43452567 43452567 C G ZFP36L2 Missense_Mutation p.E126Q 0.19 deleterious(0) probably_damaging(0.952) TCGA-BH-A0W7-01 2 71913616 71913616 C T DYSF Silent p.F2118F 0.21 TCGA-BH-A0W7-01 2 80530006 80530006 C G LRRTM1 Silent p.G313G 0.17 TCGA-BH-A0W7-01 2 89196826 89196826 C G IGKV5-2 Missense_Mutation p.H6D 0.20 deleterious(0.02) benign(0.002) TCGA-BH-A0W7-01 3 108818304 108818304 C G MORC1 Missense_Mutation p.M108I 0.19 deleterious(0) probably_damaging(0.989) TCGA-BH-A0W7-01 3 111805372 111805372 G A C3orf52 Missense_Mutation p.E40K 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.571) TCGA-BH-A0W7-01 3 113325917 113325917 C T SIDT1 Silent p.I478I 0.17 TCGA-BH-A0W7-01 3 124732523 124732523 G A HEG1 Missense_Mutation p.P634S 0.03 tolerated(0.09) probably_damaging(0.911) TCGA-BH-A0W7-01 3 137843658 137843658 G A A4GNT Silent p.I157I 0.19 TCGA-BH-A0W7-01 3 141305507 141305507 C T RASA2 Nonsense_Mutation p.Q616* 0.05 TCGA-BH-A0W7-01 3 148858903 148858903 C G HPS3 Missense_Mutation p.S271C 0.27 tolerated(0.09) possibly_damaging(0.642) TCGA-BH-A0W7-01 3 151107914 151107914 C T MED12L Missense_Mutation p.L1832F 0.17 deleterious(0.02) possibly_damaging(0.698) TCGA-BH-A0W7-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.22 tolerated(0.36) benign(0.4) TCGA-BH-A0W7-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.26 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A0W7-01 3 179474867 179474867 G T USP13 Splice_Site p.X650_splice 0.22 TCGA-BH-A0W7-01 3 36873648 36873648 G C TRANK1 Missense_Mutation p.L2432V 0.20 tolerated(0.28) benign(0.316) TCGA-BH-A0W7-01 3 45561759 45561759 C T LARS2 Nonsense_Mutation p.Q755* 0.15 TCGA-BH-A0W7-01 3 47047285 47047285 C A NBEAL2 Missense_Mutation p.P2250H 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 3 47165114 47165114 C G SETD2 Missense_Mutation p.D338H 0.10 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-BH-A0W7-01 3 50091809 50091809 C G RBM6 Missense_Mutation p.F558L 0.21 tolerated(0.29) benign(0.001) TCGA-BH-A0W7-01 3 51456160 51456160 G C VPRBP Nonsense_Mutation p.S707* 0.20 TCGA-BH-A0W7-01 3 52400784 52400784 G A DNAH1 Silent p.L1882L 0.17 TCGA-BH-A0W7-01 3 52623143 52623143 C G PBRM1 Missense_Mutation p.E970Q 0.04 deleterious(0) possibly_damaging(0.607) TCGA-BH-A0W7-01 3 53346358 53346358 C T DCP1A Silent p.Q141Q 0.10 TCGA-BH-A0W7-01 3 57543084 57543084 G A PDE12 Silent p.L326L 0.21 TCGA-BH-A0W7-01 3 62307654 62307654 G A C3orf14 Missense_Mutation p.D35N 0.18 tolerated(0.2) benign(0.015) TCGA-BH-A0W7-01 3 9517426 9517426 C G SETD5 Missense_Mutation p.S1327C 0.20 deleterious(0) benign(0.007) TCGA-BH-A0W7-01 4 100200603 100200603 G A ADH1A Silent p.D361D 0.14 TCGA-BH-A0W7-01 4 100200605 100200605 C G ADH1A Missense_Mutation p.D361H 0.13 tolerated(0.09) possibly_damaging(0.884) TCGA-BH-A0W7-01 4 152583754 152583754 G A FAM160A1 Missense_Mutation p.E991K 0.28 tolerated(0.8) benign(0) TCGA-BH-A0W7-01 4 154626261 154626261 C T TLR2 Silent p.L734L 0.20 TCGA-BH-A0W7-01 4 174242870 174242870 G C GALNT7 3'UTR 0.21 TCGA-BH-A0W7-01 4 175898316 175898316 C G ADAM29 Nonsense_Mutation p.S547* 0.15 TCGA-BH-A0W7-01 4 47559850 47559850 G T ATP10D Missense_Mutation p.R665L 0.15 tolerated(0.12) benign(0.304) TCGA-BH-A0W7-01 4 56301581 56301581 G C CLOCK 3'UTR 0.19 TCGA-BH-A0W7-01 5 10465069 10465069 G C ROPN1L 3'UTR 0.20 TCGA-BH-A0W7-01 5 111500773 111500773 G C EPB41L4A Missense_Mutation p.Q659E 0.02 tolerated_low_confidence(0.14) benign(0.002) TCGA-BH-A0W7-01 5 118454657 118454657 G C DMXL1 Missense_Mutation p.K297N 0.12 tolerated(0.14) benign(0.017) TCGA-BH-A0W7-01 5 128326091 128326091 G A SLC27A6 Silent p.K301K 0.14 TCGA-BH-A0W7-01 5 139919122 139919122 G A ANKHD1 Intron 0.10 TCGA-BH-A0W7-01 5 140256808 140256808 C T PCDHA12 Missense_Mutation p.S584L 0.19 deleterious_low_confidence(0.03) benign(0.139) TCGA-BH-A0W7-01 5 140347416 140347416 C T PCDHAC2 Silent p.I355I 0.18 TCGA-BH-A0W7-01 5 140739809 140739809 C G PCDHGB2 Nonsense_Mutation p.S36* 0.17 TCGA-BH-A0W7-01 5 140954601 140954601 G C DIAPH1 Missense_Mutation p.S525C 0.03 unknown(0) TCGA-BH-A0W7-01 5 149921221 149921221 G A NDST1 Silent p.Q613Q 0.21 TCGA-BH-A0W7-01 5 156746911 156746911 C T CYFIP2 Missense_Mutation p.R474W 0.19 deleterious(0) possibly_damaging(0.882) TCGA-BH-A0W7-01 5 159830148 159830148 G T SLU7 3'UTR 0.36 TCGA-BH-A0W7-01 5 171766111 171766111 G A SH3PXD2B Silent p.L666L 0.16 TCGA-BH-A0W7-01 5 180278287 180278287 C T ZFP62 Missense_Mutation p.E70K 0.03 tolerated(0.36) benign(0.171) TCGA-BH-A0W7-01 5 180651352 180651352 A G TRIM41 Missense_Mutation p.D118G 0.26 deleterious(0.03) unknown(0) TCGA-BH-A0W7-01 5 32090848 32090848 G C PDZD2 Missense_Mutation p.E2432Q 0.11 tolerated(0.08) benign(0.09) TCGA-BH-A0W7-01 5 32126446 32126446 G C GOLPH3 Missense_Mutation p.L257V 0.17 tolerated(0.29) benign(0.061) TCGA-BH-A0W7-01 5 35857053 35857053 C G IL7R 5'UTR 0.15 TCGA-BH-A0W7-01 5 52370307 52370307 G A ITGA2 Silent p.Q888Q 0.03 TCGA-BH-A0W7-01 5 68414426 68414426 C T SLC30A5 Missense_Mutation p.P514S 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 5 82500653 82500653 G C XRCC4 Missense_Mutation p.E220Q 0.17 tolerated(0.57) probably_damaging(0.982) TCGA-BH-A0W7-01 6 107096913 107096913 G C QRSL1 Missense_Mutation p.D132H 0.32 deleterious(0) probably_damaging(0.983) TCGA-BH-A0W7-01 6 10830915 10830915 G A MAK 5'UTR 0.14 TCGA-BH-A0W7-01 6 129939947 129939947 G A ARHGAP18 Silent p.L279L 0.12 TCGA-BH-A0W7-01 6 132859636 132859636 C G TAAR9 Missense_Mutation p.L70V 0.20 deleterious(0.01) possibly_damaging(0.65) TCGA-BH-A0W7-01 6 157511206 157511206 G C ARID1B Missense_Mutation p.D1242H 0.16 probably_damaging(0.999) TCGA-BH-A0W7-01 6 27925114 27925114 G C OR2B6 Missense_Mutation p.L32F 0.03 tolerated(0.05) benign(0.021) TCGA-BH-A0W7-01 6 28541180 28541180 G A SCAND3 Missense_Mutation p.P829L 0.05 tolerated_low_confidence(0.72) probably_damaging(0.997) TCGA-BH-A0W7-01 6 47254254 47254254 G A TNFRSF21 Silent p.D58D 0.23 TCGA-BH-A0W7-01 6 56507674 56507674 G A DST 5'UTR 0.20 TCGA-BH-A0W7-01 7 100675920 100675920 C G MUC17 Missense_Mutation p.S408C 0.15 probably_damaging(0.971) TCGA-BH-A0W7-01 7 141727458 141727458 C T MGAM Missense_Mutation p.L382F 0.35 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 7 142571218 142571218 C T TRPV6 Missense_Mutation p.E591K 0.29 deleterious(0) possibly_damaging(0.881) TCGA-BH-A0W7-01 7 154754071 154754071 G A PAXIP1 Missense_Mutation p.P696L 0.16 deleterious(0) unknown(0) TCGA-BH-A0W7-01 7 36429447 36429447 C G ANLN 5'UTR 0.26 TCGA-BH-A0W7-01 7 43532742 43532742 G A HECW1 Missense_Mutation p.E1134K 0.19 deleterious(0) possibly_damaging(0.667) TCGA-BH-A0W7-01 7 50513589 50513589 G T FIGNL1 Missense_Mutation p.S466Y 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 7 77973243 77973243 C T MAGI2 Silent p.L420L 0.03 TCGA-BH-A0W7-01 7 91855841 91855841 C G KRIT1 Missense_Mutation p.R382T 0.22 tolerated(0.15) probably_damaging(0.997) TCGA-BH-A0W7-01 7 94041910 94041910 C G COL1A2 Missense_Mutation p.I473M 0.37 unknown(0) TCGA-BH-A0W7-01 7 98602971 98602971 G A TRRAP Missense_Mutation p.V3571M 0.32 probably_damaging(0.981) TCGA-BH-A0W7-01 7 99170100 99170100 C T ZNF655 Silent p.F158F 0.11 TCGA-BH-A0W7-01 7 99987590 99987590 C G PILRA Silent p.L178L 0.13 TCGA-BH-A0W7-01 8 100732756 100732756 C T VPS13B Silent p.L2306L 0.10 TCGA-BH-A0W7-01 8 103664026 103664026 G A KLF10 Silent p.L178L 0.10 TCGA-BH-A0W7-01 8 12586696 12586696 C T LONRF1 Missense_Mutation p.D612N 0.10 deleterious(0.03) possibly_damaging(0.768) TCGA-BH-A0W7-01 8 139144758 139144758 G A FAM135B 3'UTR 0.18 TCGA-BH-A0W7-01 8 23186031 23186031 G A LOXL2 Silent p.R338R 0.12 TCGA-BH-A0W7-01 8 42587035 42587035 C G CHRNB3 Missense_Mutation p.F195L 0.11 tolerated(0.09) possibly_damaging(0.883) TCGA-BH-A0W7-01 8 55538461 55538461 G T RP1 Missense_Mutation p.K673N 0.18 deleterious(0.03) possibly_damaging(0.776) TCGA-BH-A0W7-01 8 71075706 71075706 G A NCOA2 Missense_Mutation p.L276F 0.10 deleterious(0.01) benign(0.263) TCGA-BH-A0W7-01 9 101980615 101980615 C A ALG2 Missense_Mutation p.L284F 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A0W7-01 9 104086425 104086425 G A LPPR1 3'UTR 0.05 TCGA-BH-A0W7-01 9 113141752 113141752 C G SVEP1 Missense_Mutation p.R3428P 0.24 probably_damaging(0.982) TCGA-BH-A0W7-01 9 113169407 113169407 C G SVEP1 Missense_Mutation p.E2825Q 0.15 probably_damaging(0.925) TCGA-BH-A0W7-01 9 125642124 125642124 C T RC3H2 Silent p.L374L 0.18 TCGA-BH-A0W7-01 9 129455856 129455856 C G LMX1B Silent p.V265V 0.09 TCGA-BH-A0W7-01 9 139910551 139910551 C T ABCA2 Missense_Mutation p.M1060I 0.25 tolerated(0.14) benign(0.413) TCGA-BH-A0W7-01 9 140437118 140437118 C A PNPLA7 Silent p.R214R 0.26 TCGA-BH-A0W7-01 9 3271076 3271076 C T RFX3 Missense_Mutation p.E377K 0.21 deleterious(0) benign(0.309) TCGA-BH-A0W7-01 9 5300346 5300346 C T RLN2 Missense_Mutation p.E104K 0.18 tolerated(0.1) possibly_damaging(0.554) TCGA-BH-A0W7-01 9 78638713 78638713 G C PCSK5 Missense_Mutation p.K157N 0.17 deleterious(0) probably_damaging(0.98) TCGA-BH-A0W7-01 9 84609355 84609355 C G SPATA31D1 Missense_Mutation p.H1324D 0.11 tolerated(0.17) benign(0.152) TCGA-BH-A0W7-01 X 101912816 101912816 C T GPRASP1 Silent p.L1325L 0.17 TCGA-BH-A0W7-01 X 105156652 105156652 G T NRK Nonsense_Mutation p.E753* 0.18 TCGA-BH-A0W7-01 X 107381127 107381127 C G ATG4A Missense_Mutation p.S214C 0.21 tolerated(0.07) possibly_damaging(0.705) TCGA-BH-A0W7-01 X 119389350 119389350 T C ZBTB33 3'UTR 0.33 TCGA-BH-A0W7-01 X 134992203 134992203 C G SAGE1 Missense_Mutation p.H580D 0.03 deleterious(0.01) probably_damaging(0.923) TCGA-BH-A0W7-01 X 153046982 153046982 C T SRPK3 Silent p.I71I 0.05 TCGA-BH-A0W7-01 X 15646168 15646168 C T TMEM27 Missense_Mutation p.D199N 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-BH-A0W7-01 X 19373844 19373844 G A PDHA1 Missense_Mutation p.R305K 0.15 tolerated(1) benign(0.002) TCGA-BH-A0W7-01 X 47058918 47058918 G A UBA1 Missense_Mutation p.E129K 0.17 tolerated(0.12) possibly_damaging(0.783) TCGA-BH-A0W7-01 X 48547760 48547760 G C WAS Missense_Mutation p.E464Q 0.31 deleterious(0.04) unknown(0) TCGA-BH-A0W7-01 X 71360031 71360031 C T NHSL2 Missense_Mutation p.A878V 0.21 tolerated(0.07) benign(0.275) TCGA-BH-A0WA-01 10 103432723 103432724 CA - FBXW4 Frame_Shift_Del p.V208Gfs*36 0.15 TCGA-BH-A0WA-01 10 103988761 103988761 G C ELOVL3 Missense_Mutation p.A189P 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 10 1123883 1123883 C T WDR37 Silent p.L59L 0.32 TCGA-BH-A0WA-01 10 118439170 118439170 G A HSPA12A Missense_Mutation p.A377V 0.24 tolerated(0.12) benign(0.413) TCGA-BH-A0WA-01 10 5493833 5493833 C T NET1 Missense_Mutation p.T99M 0.15 deleterious(0) probably_damaging(0.97) TCGA-BH-A0WA-01 10 70706250 70706250 C T DDX50 Missense_Mutation p.S693L 0.13 tolerated(0.27) unknown(0) TCGA-BH-A0WA-01 10 99161035 99161035 G T RRP12 5'UTR 0.45 TCGA-BH-A0WA-01 11 18124894 18124894 C T SAAL1 Splice_Site p.X46_splice 0.49 TCGA-BH-A0WA-01 11 1950349 1950349 G A TNNT3 Splice_Site p.X28_splice 0.25 TCGA-BH-A0WA-01 11 46563919 46563919 T G AMBRA1 Missense_Mutation p.T460P 0.31 tolerated_low_confidence(0.09) possibly_damaging(0.471) TCGA-BH-A0WA-01 11 5373048 5373048 C A OR51B6 Missense_Mutation p.T104N 0.17 deleterious(0.02) benign(0.288) TCGA-BH-A0WA-01 11 67377047 67377047 G A NDUFV1 Missense_Mutation p.A151T 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BH-A0WA-01 11 92532859 92532859 C G FAT3 Missense_Mutation p.P2227R 0.60 probably_damaging(0.937) TCGA-BH-A0WA-01 12 108086667 108086667 G A PWP1 Silent p.L132L 0.19 TCGA-BH-A0WA-01 12 110784327 110784327 T A ATP2A2 3'UTR 0.13 TCGA-BH-A0WA-01 12 120791150 120791150 T G MSI1 Missense_Mutation p.S229R 0.52 deleterious(0.04) benign(0.003) TCGA-BH-A0WA-01 12 22797179 22797179 A G ETNK1 Intron 0.17 TCGA-BH-A0WA-01 12 78513062 78513062 T A NAV3 Missense_Mutation p.L1029Q 0.52 deleterious(0.05) probably_damaging(0.937) TCGA-BH-A0WA-01 14 55408276 55408276 T G WDHD1 Missense_Mutation p.K1108Q 0.60 deleterious(0) possibly_damaging(0.688) TCGA-BH-A0WA-01 14 77793827 77793827 T A GSTZ1 Missense_Mutation p.F50I 0.67 deleterious(0) possibly_damaging(0.898) TCGA-BH-A0WA-01 14 93686633 93686633 T C UBR7 Silent p.D333D 0.47 TCGA-BH-A0WA-01 15 34647278 34647278 G A NUTM1 Silent p.Q445Q 0.47 TCGA-BH-A0WA-01 15 44944117 44944117 G A SPG11 Missense_Mutation p.S343L 0.36 tolerated(0.23) benign(0.003) TCGA-BH-A0WA-01 15 66629169 66629169 A G TIPIN 3'UTR 0.11 TCGA-BH-A0WA-01 15 74948230 74948230 T C EDC3 Missense_Mutation p.I222V 0.49 deleterious(0.01) possibly_damaging(0.869) TCGA-BH-A0WA-01 16 12009404 12009404 C T GSPT1 Silent p.R58R 0.50 TCGA-BH-A0WA-01 16 30037026 30037043 CACCCTCCCATGCTCACT - FAM57B Intron 0.24 TCGA-BH-A0WA-01 16 396580 396580 A G AXIN1 Missense_Mutation p.I149T 0.67 deleterious(0) probably_damaging(0.999) TCGA-BH-A0WA-01 16 90048205 90048205 G A AFG3L1P RNA 0.73 TCGA-BH-A0WA-01 17 41223256 41223256 C T BRCA1 Splice_Site p.X1580_splice 0.56 TCGA-BH-A0WA-01 17 42856604 42856604 G A ADAM11 Missense_Mutation p.G764E 0.25 tolerated(0.25) benign(0.274) TCGA-BH-A0WA-01 17 7577559 7577559 G C TP53 Missense_Mutation p.S241C 0.56 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 18 19153877 19153877 T C ESCO1 Missense_Mutation p.I310V 0.36 deleterious(0) probably_damaging(0.994) TCGA-BH-A0WA-01 18 43534805 43534805 G A EPG5 Missense_Mutation p.S188F 0.44 tolerated_low_confidence(0.06) possibly_damaging(0.447) TCGA-BH-A0WA-01 19 14015714 14015714 C T C19orf57 5'UTR 0.23 TCGA-BH-A0WA-01 19 39963879 39963879 T C SUPT5H Silent p.Y765Y 0.25 TCGA-BH-A0WA-01 19 42396123 42396123 G T ARHGEF1 Missense_Mutation p.G100C 0.37 deleterious(0.04) benign(0.001) TCGA-BH-A0WA-01 19 44303921 44303921 T G LYPD5 Missense_Mutation p.M44L 0.21 tolerated(0.34) benign(0.003) TCGA-BH-A0WA-01 19 49692303 49692303 C A TRPM4 Silent p.A658A 0.35 TCGA-BH-A0WA-01 1 110584173 110584173 C A STRIP1 Silent p.I222I 0.06 TCGA-BH-A0WA-01 1 151006280 151006280 A - PRUNE Splice_Site p.X312_splice 0.34 TCGA-BH-A0WA-01 1 155850298 155850298 T A SYT11 Missense_Mutation p.I290N 0.60 tolerated(0.49) benign(0.032) TCGA-BH-A0WA-01 1 186277793 186277793 T A PRG4 Missense_Mutation p.L981H 0.03 unknown(0) TCGA-BH-A0WA-01 1 211486914 211486914 A T RCOR3 Missense_Mutation p.Q489L 0.23 tolerated(0.1) probably_damaging(0.979) TCGA-BH-A0WA-01 1 215847863 215847863 A T USH2A Missense_Mutation p.W4464R 0.17 probably_damaging(1) TCGA-BH-A0WA-01 1 22838430 22838430 T G ZBTB40 Missense_Mutation p.M755R 0.06 tolerated(0.27) benign(0) TCGA-BH-A0WA-01 1 43902942 43902946 GATCC - SZT2 Frame_Shift_Del p.I1989Sfs*58 0.28 TCGA-BH-A0WA-01 1 87810713 87810713 A T LMO4 3'UTR 0.43 TCGA-BH-A0WA-01 20 33874331 33874331 C T FAM83C 3'UTR 0.24 TCGA-BH-A0WA-01 20 43348649 43348649 C T WISP2 Missense_Mutation p.R58W 0.50 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 20 46264187 46264187 C G NCOA3 Missense_Mutation p.P412A 0.13 tolerated(0.81) benign(0) TCGA-BH-A0WA-01 20 47839832 47839861 GAAAAGGAGAAAGAAGCAAAGGAAGGCTCT - DDX27 In_Frame_Del p.K142_E151del 0.16 TCGA-BH-A0WA-01 20 61512736 61512736 T G DIDO1 Silent p.P1524P 0.29 TCGA-BH-A0WA-01 21 42749839 42749839 G A MX2 Missense_Mutation p.G125R 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 21 45795833 45795833 G A TRPM2 Missense_Mutation p.V297M 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A0WA-01 22 42609210 42609210 G A TCF20 Missense_Mutation p.S701F 0.29 possibly_damaging(0.555) TCGA-BH-A0WA-01 22 45795060 45795060 A G SMC1B Missense_Mutation p.L343S 0.09 deleterious(0) possibly_damaging(0.844) TCGA-BH-A0WA-01 2 108614421 108614421 C A SLC5A7 Silent p.L192L 0.24 TCGA-BH-A0WA-01 2 108614431 108614431 T A SLC5A7 Missense_Mutation p.F196I 0.24 tolerated(0.06) possibly_damaging(0.775) TCGA-BH-A0WA-01 2 109098250 109098253 AATT - GCC2 Frame_Shift_Del p.L1054Efs*10 0.53 TCGA-BH-A0WA-01 2 118854303 118854303 C G INSIG2 Silent p.L57L 0.04 TCGA-BH-A0WA-01 2 120362809 120362809 C G PCDP1 Silent p.L359L 0.37 TCGA-BH-A0WA-01 2 136558268 136558268 C A LCT Missense_Mutation p.G1592V 0.35 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 2 185803357 185803357 C T ZNF804A Silent p.S1078S 0.35 TCGA-BH-A0WA-01 2 1921081 1921081 T A MYT1L Missense_Mutation p.K503M 0.04 deleterious(0) probably_damaging(0.951) TCGA-BH-A0WA-01 2 197565833 197565833 C G CCDC150 Missense_Mutation p.L542V 0.33 tolerated(0.2) benign(0.014) TCGA-BH-A0WA-01 2 233244985 233244985 G C ALPP Missense_Mutation p.R249S 0.16 deleterious(0.02) probably_damaging(1) TCGA-BH-A0WA-01 2 233273066 233273066 G C ALPPL2 Missense_Mutation p.R246S 0.64 deleterious(0.02) probably_damaging(1) TCGA-BH-A0WA-01 2 234915527 234915527 C T TRPM8 Missense_Mutation p.A1054V 0.06 deleterious(0.02) benign(0.171) TCGA-BH-A0WA-01 2 236877203 236877203 G T AGAP1 Missense_Mutation p.K527N 0.71 deleterious(0) probably_damaging(0.999) TCGA-BH-A0WA-01 2 64683524 64683524 T A LGALSL Silent p.S100S 0.16 TCGA-BH-A0WA-01 2 79348775 79348775 A T REG1A Missense_Mutation p.N51I 0.08 tolerated(0.22) possibly_damaging(0.873) TCGA-BH-A0WA-01 2 89476024 89476024 C T IGKV2-24 Missense_Mutation p.V50I 0.37 deleterious(0.04) benign(0.003) TCGA-BH-A0WA-01 3 119886036 119886036 C G GPR156 Missense_Mutation p.C763S 0.31 deleterious(0) probably_damaging(0.998) TCGA-BH-A0WA-01 3 122628901 122628901 G C SEMA5B 3'UTR 0.12 TCGA-BH-A0WA-01 3 125828902 125828902 G A ALDH1L1 Silent p.T754T 0.32 TCGA-BH-A0WA-01 3 126139043 126139043 C A CCDC37 Silent p.P351P 0.24 TCGA-BH-A0WA-01 3 136096565 136096565 C T STAG1 Silent p.V769V 0.19 TCGA-BH-A0WA-01 3 138251391 138251391 G C CEP70 Nonsense_Mutation p.Y219* 0.08 TCGA-BH-A0WA-01 3 158387342 158387342 C T LXN Missense_Mutation p.A84T 0.21 tolerated(0.11) benign(0.307) TCGA-BH-A0WA-01 3 186501400 186501400 A G EIF4A2 Translation_Start_Site p.M1? 0.04 tolerated_low_confidence(0.18) benign(0.019) TCGA-BH-A0WA-01 3 195391070 195391070 C T SDHAP2 RNA 0.29 TCGA-BH-A0WA-01 3 40528623 40528623 G T ZNF619 Nonsense_Mutation p.E248* 0.25 TCGA-BH-A0WA-01 3 44285812 44285812 G A TOPAZ1 Missense_Mutation p.G605E 0.37 tolerated(0.31) benign(0.031) TCGA-BH-A0WA-01 3 69167916 69167916 C G LMOD3 Silent p.V530V 0.35 TCGA-BH-A0WA-01 3 9976594 9976594 A C CRELD1 Missense_Mutation p.K84Q 0.51 tolerated(0.15) possibly_damaging(0.576) TCGA-BH-A0WA-01 4 62778445 62778445 A T LPHN3 Missense_Mutation p.K626N 0.59 deleterious(0.02) probably_damaging(0.99) TCGA-BH-A0WA-01 4 7055893 7055893 C T TADA2B Silent p.P125P 0.55 TCGA-BH-A0WA-01 5 156590215 156590215 T C FAM71B Missense_Mutation p.E354G 0.33 tolerated(0.39) benign(0) TCGA-BH-A0WA-01 5 180276874 180276874 C T ZFP62 Missense_Mutation p.A541T 0.08 tolerated(0.23) probably_damaging(0.999) TCGA-BH-A0WA-01 5 55256367 55256367 G C IL6ST Missense_Mutation p.S279C 0.29 deleterious(0) possibly_damaging(0.735) TCGA-BH-A0WA-01 5 9629727 9629727 T G TAS2R1 Missense_Mutation p.I140L 0.16 tolerated(0.68) benign(0.036) TCGA-BH-A0WA-01 6 10874470 10874470 G C GCM2 Missense_Mutation p.P427A 0.43 tolerated(0.06) benign(0.039) TCGA-BH-A0WA-01 6 43316157 43316157 T A ZNF318 Missense_Mutation p.S993C 0.46 possibly_damaging(0.831) TCGA-BH-A0WA-01 7 1024915 1024915 C G CYP2W1 Missense_Mutation p.L201V 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-BH-A0WA-01 7 20691242 20691242 C G ABCB5 Missense_Mutation p.P511R 0.18 deleterious(0) probably_damaging(0.998) TCGA-BH-A0WA-01 7 73530288 73530288 G A LIMK1 Missense_Mutation p.G523S 0.33 deleterious(0.03) probably_damaging(1) TCGA-BH-A0WA-01 7 8791150 8791150 C T NXPH1 Silent p.S189S 0.25 TCGA-BH-A0WA-01 8 139163837 139163837 A C FAM135B Missense_Mutation p.C961G 0.07 tolerated_low_confidence(0.58) benign(0) TCGA-BH-A0WA-01 8 143856611 143856611 G A LYNX1 Intron 0.39 TCGA-BH-A0WA-01 8 52339306 52339306 A T PXDNL Missense_Mutation p.F513Y 0.25 deleterious(0.03) possibly_damaging(0.633) TCGA-BH-A0WA-01 8 61765545 61765545 G C CHD7 Silent p.L2087L 0.12 TCGA-BH-A0WA-01 8 81553681 81553681 T A ZNF704 Nonsense_Mutation p.K387* 0.06 TCGA-BH-A0WA-01 9 110086219 110086219 G A RAD23B Missense_Mutation p.R289K 0.34 deleterious(0.01) probably_damaging(0.971) TCGA-BH-A0WA-01 9 117027349 117027349 G T COL27A1 Missense_Mutation p.V1100L 0.24 benign(0.299) TCGA-BH-A0WA-01 9 117027350 117027350 T G COL27A1 Missense_Mutation p.V1100G 0.25 possibly_damaging(0.637) TCGA-BH-A0WA-01 9 139566525 139566525 G A EGFL7 Missense_Mutation p.E262K 0.17 deleterious(0) probably_damaging(0.998) TCGA-BH-A0WA-01 9 38577959 38577959 C G ANKRD18A Missense_Mutation p.D812H 0.10 deleterious(0.01) benign(0.157) TCGA-BH-A0WA-01 9 5920327 5920327 A T KIAA2026 Missense_Mutation p.I1890N 0.16 deleterious(0) probably_damaging(0.991) TCGA-BH-A0WA-01 X 101857506 101857506 C G ARMCX5 Missense_Mutation p.T146S 0.26 deleterious(0.02) benign(0.026) TCGA-BH-A0WA-01 X 101912281 101912281 G A GPRASP1 Missense_Mutation p.C1147Y 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 X 108619390 108619420 CTTTGCCCTTATTATAGAAAACATAAAAAAT - GUCY2F Splice_Site p.X1051_splice 0.25 TCGA-BH-A0WA-01 X 133906273 133906273 A T FAM122B Missense_Mutation p.S233T 0.19 tolerated(0.08) possibly_damaging(0.82) TCGA-BH-A0WA-01 X 135288565 135288565 G A FHL1 Splice_Site 0.44 TCGA-BH-A0WA-01 X 147088318 147088318 C T FMR1NB Missense_Mutation p.S165L 0.54 deleterious(0) possibly_damaging(0.504) TCGA-BH-A0WA-01 X 151900151 151900151 G T MAGEA12 Missense_Mutation p.P217H 0.45 deleterious(0.03) benign(0.229) TCGA-BH-A0WA-01 X 152018830 152018830 G A NSDHL Missense_Mutation p.G44S 0.48 deleterious(0) probably_damaging(1) TCGA-BH-A0WA-01 X 36117974 36117974 A G CHDC2 Missense_Mutation p.D277G 0.38 deleterious(0) probably_damaging(0.999) TCGA-BH-A0WA-01 X 46539151 46539151 G A SLC9A7 Missense_Mutation p.P189S 0.34 deleterious(0.02) probably_damaging(0.967) TCGA-BH-A0WA-01 X 83128629 83128629 G A CYLC1 Missense_Mutation p.D305N 0.07 tolerated(0.06) unknown(0) TCGA-BH-A18F-01 10 105005715 105005715 G A RPEL1 5'UTR 0.21 TCGA-BH-A18F-01 10 5498966 5498966 C T NET1 3'UTR 0.25 TCGA-BH-A18F-01 10 75231327 75231327 C T PPP3CB Missense_Mutation p.A190T 0.22 tolerated(0.22) benign(0.1) TCGA-BH-A18F-01 10 85984684 85984684 C A LRIT2 Silent p.L99L 0.27 TCGA-BH-A18F-01 11 116706641 116706641 C T APOA1 Silent p.E229E 0.19 TCGA-BH-A18F-01 11 11977640 11977640 G A USP47 Missense_Mutation p.R1261H 0.22 tolerated(0.12) benign(0.007) TCGA-BH-A18F-01 11 3022288 3022288 G A CARS 3'UTR 0.23 TCGA-BH-A18F-01 11 62533187 62533187 G A POLR2G Silent p.K154K 0.25 TCGA-BH-A18F-01 11 7647029 7647029 G A PPFIBP2 Missense_Mutation p.E245K 0.09 tolerated(0.07) probably_damaging(0.972) TCGA-BH-A18F-01 12 121756176 121756176 G A ANAPC5 Silent p.I599I 0.27 TCGA-BH-A18F-01 12 31136068 31136068 G A TSPAN11 Missense_Mutation p.G229R 0.30 deleterious(0.02) possibly_damaging(0.879) TCGA-BH-A18F-01 12 48381467 48381467 C T COL2A1 Missense_Mutation p.R383H 0.16 unknown(0) TCGA-BH-A18F-01 12 52981502 52981502 C T KRT72 Missense_Mutation p.R408H 0.18 deleterious(0.02) probably_damaging(0.976) TCGA-BH-A18F-01 12 57944160 57944160 G A KIF5A Missense_Mutation p.G36R 0.32 tolerated(0.05) benign(0.255) TCGA-BH-A18F-01 12 7843251 7843251 C T GDF3 Silent p.Q106Q 0.33 TCGA-BH-A18F-01 13 111992207 111992207 C T TEX29 Intron 0.08 TCGA-BH-A18F-01 14 38061209 38061209 C A FOXA1 Missense_Mutation p.L260F 0.20 deleterious(0) probably_damaging(0.999) TCGA-BH-A18F-01 15 78211293 78211293 C T RP11-114H24.7 Intron 0.22 TCGA-BH-A18F-01 16 57713121 57713121 C T GPR97 Silent p.G175G 0.35 TCGA-BH-A18F-01 16 67006796 67006796 C T CES3 Silent p.F520F 0.23 TCGA-BH-A18F-01 16 68855935 68855936 - CTGC CDH1 Frame_Shift_Ins p.L583Pfs*6 0.32 TCGA-BH-A18F-01 17 29562657 29562660 TGTT - NF1 Frame_Shift_Del p.F1247Ifs*18 0.32 TCGA-BH-A18F-01 18 67992128 67992128 G T SOCS6 Missense_Mutation p.G75V 0.24 deleterious(0) probably_damaging(0.989) TCGA-BH-A18F-01 19 22271888 22271888 C A ZNF257 Missense_Mutation p.L446I 0.14 deleterious(0.01) probably_damaging(1) TCGA-BH-A18F-01 19 42301853 42301853 G A CEACAM3 Missense_Mutation p.E133K 0.21 tolerated(0.55) probably_damaging(0.971) TCGA-BH-A18F-01 19 49439382 49439382 C T DHDH Missense_Mutation p.T99M 0.11 tolerated(0.57) benign(0) TCGA-BH-A18F-01 19 52570762 52570762 C T ZNF841 Missense_Mutation p.D125N 0.17 tolerated(0.18) possibly_damaging(0.472) TCGA-BH-A18F-01 1 11147520 11147520 G A EXOSC10 Silent p.D358D 0.24 TCGA-BH-A18F-01 1 151787136 151787136 C T RORC Missense_Mutation p.E283K 0.18 deleterious(0) benign(0.17) TCGA-BH-A18F-01 1 170688909 170688909 G A PRRX1 Missense_Mutation p.R95Q 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-BH-A18F-01 1 228481245 228481245 G A OBSCN Missense_Mutation p.V4116M 0.10 benign(0.202) TCGA-BH-A18F-01 1 231474051 231474051 C A SPRTN 5'UTR 0.38 TCGA-BH-A18F-01 1 236385305 236385305 T A ERO1LB Missense_Mutation p.E376D 0.21 tolerated(0.32) benign(0.024) TCGA-BH-A18F-01 1 247769804 247769804 C T OR2G3 Missense_Mutation p.S306L 0.18 tolerated(0.22) benign(0.001) TCGA-BH-A18F-01 1 47130954 47130954 C T ATPAF1 Missense_Mutation p.D140N 0.10 deleterious(0.04) benign(0.363) TCGA-BH-A18F-01 20 3684705 3684705 G A SIGLEC1 Missense_Mutation p.P247L 0.17 deleterious(0) probably_damaging(0.987) TCGA-BH-A18F-01 20 50701381 50701381 C T ZFP64 Silent p.K551K 0.18 TCGA-BH-A18F-01 21 45826592 45826592 G C TRPM2 Missense_Mutation p.G969A 0.12 deleterious(0) probably_damaging(0.988) TCGA-BH-A18F-01 2 113308539 113308539 G A POLR1B Missense_Mutation p.R241Q 0.20 tolerated(0.27) benign(0.002) TCGA-BH-A18F-01 2 125281897 125281897 G A CNTNAP5 Missense_Mutation p.G448S 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A18F-01 2 152384078 152384078 C T NEB Missense_Mutation p.E7253K 0.22 probably_damaging(0.999) TCGA-BH-A18F-01 2 170676119 170676119 T C METTL5 Silent p.E147E 0.24 TCGA-BH-A18F-01 2 185802128 185802128 G A ZNF804A Missense_Mutation p.D669N 0.07 tolerated(0.27) benign(0.009) TCGA-BH-A18F-01 2 234094557 234094557 G A INPP5D Missense_Mutation p.E770K 0.22 tolerated(0.78) possibly_damaging(0.575) TCGA-BH-A18F-01 2 32476071 32476071 G A NLRC4 Missense_Mutation p.R288W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BH-A18F-01 2 61719472 61719472 C T XPO1 Missense_Mutation p.E571K 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A18F-01 3 178936094 178936094 C A PIK3CA Missense_Mutation p.Q546K 0.25 deleterious(0.03) probably_damaging(0.952) TCGA-BH-A18F-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.30 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A18F-01 3 38593036 38593036 C T SCN5A Silent p.S1609S 0.33 TCGA-BH-A18F-01 4 3040213 3040213 C T GRK4 Silent p.G552G 0.12 TCGA-BH-A18F-01 4 83763540 83763541 - T SEC31A Nonsense_Mutation p.Y907* 0.14 TCGA-BH-A18F-01 5 156378763 156378763 G A TIMD4 Missense_Mutation p.R147C 0.08 tolerated(0.1) benign(0.446) TCGA-BH-A18F-01 6 31962113 31962113 G C C4A Missense_Mutation p.Q848H 0.12 deleterious(0) probably_damaging(0.962) TCGA-BH-A18F-01 6 33371820 33371820 G C KIFC1 Missense_Mutation p.E224Q 0.25 tolerated(0.2) benign(0.008) TCGA-BH-A18F-01 7 128490064 128490064 C A FLNC Missense_Mutation p.S1745Y 0.23 deleterious(0.04) benign(0.01) TCGA-BH-A18F-01 7 143057212 143057212 C T FAM131B Missense_Mutation p.G20D 0.27 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-BH-A18F-01 7 15240813 15240813 C A AGMO 3'UTR 0.13 TCGA-BH-A18F-01 7 73790952 73790952 G C CLIP2 Missense_Mutation p.E741Q 0.28 tolerated(0.09) possibly_damaging(0.821) TCGA-BH-A18F-01 7 74212296 74212296 G A GTF2IRD2 Nonsense_Mutation p.Q519* 0.18 TCGA-BH-A18F-01 7 99702544 99702547 CTTC - AP4M1 Frame_Shift_Del p.P221Afs*9 0.23 TCGA-BH-A18F-01 8 100479736 100479736 T C VPS13B Silent p.G1180G 0.22 TCGA-BH-A18F-01 8 113308218 113308218 G A CSMD3 Missense_Mutation p.P2820S 0.07 deleterious(0.03) probably_damaging(0.977) TCGA-BH-A18F-01 8 144652216 144652216 C T MROH6 Missense_Mutation p.D355N 0.33 tolerated(0.64) probably_damaging(0.984) TCGA-BH-A18F-01 9 17466866 17466866 G C CNTLN Missense_Mutation p.E1278Q 0.34 deleterious(0.04) benign(0.201) TCGA-BH-A18F-01 9 36191020 36191020 C T CLTA 5'UTR 0.06 TCGA-BH-A18F-01 X 111698859 111698859 G A ZCCHC16 Silent p.P301P 0.18 TCGA-BH-A18F-01 X 119691821 119691821 C A CUL4B Missense_Mutation p.Q228H 0.22 tolerated(0.47) benign(0.005) TCGA-BH-A18F-01 X 18195777 18195777 G A BEND2 Silent p.F514F 0.22 TCGA-BH-A18F-01 X 2856150 2856150 C T ARSE Silent p.E425E 0.22 TCGA-BH-A18F-01 X 49459371 49459371 C G PAGE1 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0.01) benign(0.322) TCGA-BH-A18F-01 X 78216027 78216027 C T P2RY10 Missense_Mutation p.L4F 0.22 tolerated_low_confidence(0.15) benign(0.001) TCGA-BH-A18G-01 10 102740653 102740653 C T SEMA4G Silent p.C514C 0.37 TCGA-BH-A18G-01 10 103530145 103530145 G A FGF8 Missense_Mutation p.P226S 0.32 deleterious(0.04) benign(0.395) TCGA-BH-A18G-01 10 103534553 103534553 C T FGF8 Silent p.G91G 0.43 TCGA-BH-A18G-01 10 104240642 104240642 G A ACTR1A Missense_Mutation p.S370F 0.37 deleterious(0.01) benign(0.116) TCGA-BH-A18G-01 10 104596968 104596968 T C CYP17A1 Missense_Mutation p.N51D 0.38 deleterious(0.02) benign(0.079) TCGA-BH-A18G-01 10 105181188 105181188 T C PDCD11 Silent p.D787D 0.37 TCGA-BH-A18G-01 10 107012633 107012633 G T SORCS3 Missense_Mutation p.R1069M 0.29 deleterious(0.02) benign(0.025) TCGA-BH-A18G-01 10 115614726 115614728 AGG - NHLRC2 In_Frame_Del p.E33del 0.48 TCGA-BH-A18G-01 10 115891877 115891877 T C C10orf118 Silent p.L574L 0.04 TCGA-BH-A18G-01 10 115973857 115973857 T C TDRD1 Silent p.H732H 0.33 TCGA-BH-A18G-01 10 116887435 116887435 T - ATRNL1 Frame_Shift_Del p.F192Lfs*8 0.33 TCGA-BH-A18G-01 10 118101695 118101695 G A CCDC172 Missense_Mutation p.A144T 0.35 deleterious(0.02) benign(0.055) TCGA-BH-A18G-01 10 118891730 118891730 T A VAX1 3'Flank 0.34 TCGA-BH-A18G-01 10 120833345 120833345 A G EIF3A Silent p.L52L 0.40 TCGA-BH-A18G-01 10 12209886 12209886 G A NUDT5 Intron 0.47 TCGA-BH-A18G-01 10 123845856 123845856 G A TACC2 Missense_Mutation p.A1281T 0.10 benign(0.421) TCGA-BH-A18G-01 10 123847394 123847394 C T TACC2 Silent p.C1793C 0.44 TCGA-BH-A18G-01 10 125426499 125426499 C T GPR26 Silent p.Y192Y 0.42 TCGA-BH-A18G-01 10 125801930 125801930 C T CHST15 Missense_Mutation p.R307H 0.39 deleterious(0.03) probably_damaging(0.97) TCGA-BH-A18G-01 10 128193497 128193497 C T C10orf90 Missense_Mutation p.R91H 0.38 tolerated(0.84) benign(0.001) TCGA-BH-A18G-01 10 129231622 129231622 C T DOCK1 Missense_Mutation p.R1643C 0.38 deleterious(0) possibly_damaging(0.876) TCGA-BH-A18G-01 10 129242509 129242509 A G DOCK1 Silent p.T1772T 0.39 TCGA-BH-A18G-01 10 129676577 129676577 T C CLRN3 Missense_Mutation p.T173A 0.08 tolerated(0.54) benign(0.004) TCGA-BH-A18G-01 10 129690895 129690895 T C CLRN3 Missense_Mutation p.T52A 0.41 tolerated(0.09) benign(0.06) TCGA-BH-A18G-01 10 129866447 129866447 C T PTPRE Missense_Mutation p.P302S 0.38 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 10 13336579 13336580 - T PHYH Frame_Shift_Ins p.I88Nfs*28 0.29 TCGA-BH-A18G-01 10 134037961 134037961 C T STK32C Missense_Mutation p.V315I 0.40 tolerated(0.2) benign(0.252) TCGA-BH-A18G-01 10 134040317 134040317 C T STK32C Missense_Mutation p.G209D 0.30 tolerated(0.14) benign(0.012) TCGA-BH-A18G-01 10 134523913 134523913 C A INPP5A Silent p.S200S 0.40 TCGA-BH-A18G-01 10 134895422 134895422 G A GPR123-AS1 3'Flank 0.45 TCGA-BH-A18G-01 10 135020548 135020548 A C KNDC1 Intron 0.36 TCGA-BH-A18G-01 10 135438919 135438920 - T FRG2B Frame_Shift_Ins p.S174Kfs*32 0.09 TCGA-BH-A18G-01 10 16981063 16981063 A G CUBN Missense_Mutation p.Y1878H 0.43 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 10 17949621 17949621 C T MRC1L1 Missense_Mutation p.R1329W 0.04 possibly_damaging(0.761) TCGA-BH-A18G-01 10 21804099 21804099 T C SKIDA1 Missense_Mutation p.I885V 0.39 tolerated(1) unknown(0) TCGA-BH-A18G-01 10 30317579 30317579 G A KIAA1462 Silent p.L500L 0.34 TCGA-BH-A18G-01 10 30625856 30625856 G A MTPAP Missense_Mutation p.A219V 0.03 deleterious(0.03) possibly_damaging(0.461) TCGA-BH-A18G-01 10 31139241 31139241 C A ZNF438 Missense_Mutation p.K31N 0.31 deleterious(0) probably_damaging(0.967) TCGA-BH-A18G-01 10 3174632 3174632 A G PFKP Missense_Mutation p.R637G 0.33 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 10 31815987 31815987 A G ZEB1 Missense_Mutation p.E1058G 0.37 tolerated_low_confidence(0.68) benign(0) TCGA-BH-A18G-01 10 32580139 32580139 T A EPC1 Missense_Mutation p.Q309H 0.38 tolerated(0.17) benign(0.309) TCGA-BH-A18G-01 10 32581465 32581465 T C EPC1 Silent p.K258K 0.32 TCGA-BH-A18G-01 10 42965606 42965606 G A CCNYL2 RNA 0.33 TCGA-BH-A18G-01 10 43597893 43597895 CTC - RET In_Frame_Del p.S148del 0.50 TCGA-BH-A18G-01 10 5009171 5009171 C T AKR1C1 Missense_Mutation p.S102L 0.34 deleterious(0) probably_damaging(0.96) TCGA-BH-A18G-01 10 5009412 5009412 C T AKR1C1 Intron 0.44 TCGA-BH-A18G-01 10 51465003 51465003 T C AGAP7 Missense_Mutation p.S485G 0.16 deleterious(0) benign(0.198) TCGA-BH-A18G-01 10 51890690 51890690 A G FAM21A Silent p.K1246K 0.32 TCGA-BH-A18G-01 10 54040671 54040671 A G PRKG1 Missense_Mutation p.H509R 0.39 tolerated(0.26) benign(0.009) TCGA-BH-A18G-01 10 55566571 55566572 - T PCDH15 Frame_Shift_Ins p.M1605Nfs*18 0.31 TCGA-BH-A18G-01 10 5693197 5693197 G - ASB13 Frame_Shift_Del p.L121Cfs*6 0.35 TCGA-BH-A18G-01 10 5798656 5798656 A G FAM208B Silent p.L2229L 0.32 TCGA-BH-A18G-01 10 61028377 61028377 A G FAM13C Missense_Mutation p.I293T 0.40 deleterious(0) possibly_damaging(0.783) TCGA-BH-A18G-01 10 62038606 62038606 C T ANK3 Missense_Mutation p.A114T 0.36 probably_damaging(0.986) TCGA-BH-A18G-01 10 64136598 64136598 C T ZNF365 Missense_Mutation p.R216W 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-BH-A18G-01 10 64159513 64159513 A - ZNF365 Intron 0.35 TCGA-BH-A18G-01 10 71677050 71677050 A G COL13A1 Silent p.E319E 0.44 TCGA-BH-A18G-01 10 73827373 73827373 C T SPOCK2 Missense_Mutation p.S236N 0.41 tolerated(0.11) benign(0.03) TCGA-BH-A18G-01 10 74886455 74886455 G A NUDT13 Missense_Mutation p.R243H 0.29 tolerated(0.19) benign(0.033) TCGA-BH-A18G-01 10 75525311 75525311 C A SEC24C Missense_Mutation p.R444S 0.05 deleterious(0) probably_damaging(0.991) TCGA-BH-A18G-01 10 76788956 76788956 T - KAT6B Frame_Shift_Del p.L1460* 0.31 TCGA-BH-A18G-01 10 76803770 76803770 G A DUPD1 Missense_Mutation p.T69M 0.08 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 10 78708960 78708960 A G KCNMA1 Silent p.I866I 0.39 TCGA-BH-A18G-01 10 79554687 79554687 C T DLG5 Silent p.P1822P 0.41 TCGA-BH-A18G-01 10 79767519 79767519 C - POLR3A Frame_Shift_Del p.G672Dfs*39 0.36 TCGA-BH-A18G-01 10 85933676 85933676 A T C10orf99 Missense_Mutation p.E23D 0.32 deleterious(0) possibly_damaging(0.866) TCGA-BH-A18G-01 10 87362186 87362186 C T GRID1 Silent p.S958S 0.34 TCGA-BH-A18G-01 10 90366448 90366448 C T LIPJ Silent p.Y295Y 0.36 TCGA-BH-A18G-01 10 90984930 90984930 A - LIPA Frame_Shift_Del p.F198Lfs*19 0.34 TCGA-BH-A18G-01 10 91162830 91162830 T G IFIT1 Silent p.S266S 0.39 TCGA-BH-A18G-01 10 93605590 93605590 G A TNKS2 Missense_Mutation p.E751K 0.31 tolerated(0.06) probably_damaging(0.957) TCGA-BH-A18G-01 10 93787059 93787059 T C BTAF1 Splice_Site p.X1802_splice 0.44 TCGA-BH-A18G-01 10 95347289 95347289 T C FFAR4 Missense_Mutation p.F353L 0.38 tolerated(0.56) benign(0.003) TCGA-BH-A18G-01 10 96076512 96076515 AAGT - PLCE1 Splice_Site p.X2114_splice 0.13 TCGA-BH-A18G-01 10 97918856 97918856 A - ZNF518A RNA 0.40 TCGA-BH-A18G-01 10 99211925 99211925 C T ZDHHC16 Nonsense_Mutation p.R108* 0.06 TCGA-BH-A18G-01 10 99343450 99343450 C T ANKRD2 Nonsense_Mutation p.R351* 0.36 TCGA-BH-A18G-01 10 99426328 99426328 G A PI4K2A Silent p.K376K 0.44 TCGA-BH-A18G-01 11 105923751 105923751 T C KBTBD3 Missense_Mutation p.I555M 0.06 deleterious(0) probably_damaging(0.992) TCGA-BH-A18G-01 11 107393128 107393128 G A ALKBH8 Missense_Mutation p.P395L 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 11 108032695 108032696 - T NPAT Frame_Shift_Ins p.S1040Ifs*18 0.09 TCGA-BH-A18G-01 11 108235935 108235935 C T ATM Nonsense_Mutation p.R2993* 0.36 TCGA-BH-A18G-01 11 1084831 1084831 T C MUC2 Missense_Mutation p.Y876H 0.44 probably_damaging(1) TCGA-BH-A18G-01 11 111953207 111953207 T C C11orf57 Silent p.I131I 0.05 TCGA-BH-A18G-01 11 11362441 11362441 G A GALNT18 Silent p.N401N 0.36 TCGA-BH-A18G-01 11 113661260 113661260 G A ATF4P4 RNA 0.49 TCGA-BH-A18G-01 11 113675636 113675636 T C USP28 Missense_Mutation p.T845A 0.04 deleterious(0.05) probably_damaging(0.998) TCGA-BH-A18G-01 11 114270753 114270753 G T C11orf71 Missense_Mutation p.L101I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-BH-A18G-01 11 116707832 116707832 G - APOA1 Frame_Shift_Del p.Q29Rfs*7 0.42 TCGA-BH-A18G-01 11 117075065 117075065 T C TAGLN Missense_Mutation p.I199T 0.33 deleterious(0) probably_damaging(0.991) TCGA-BH-A18G-01 11 117150623 117150623 G C RNF214 Splice_Site p.X320_splice 0.36 TCGA-BH-A18G-01 11 118279788 118279788 G - ATP5L Frame_Shift_Del p.G97Afs*18 0.39 TCGA-BH-A18G-01 11 118942364 118942364 G A VPS11 Missense_Mutation p.G231D 0.37 tolerated(0.53) benign(0.009) TCGA-BH-A18G-01 11 119206924 119206924 G A RNF26 Silent p.G364G 0.39 TCGA-BH-A18G-01 11 120831678 120831678 C T GRIK4 Silent p.T645T 0.06 TCGA-BH-A18G-01 11 121358741 121358741 T C SORL1 Missense_Mutation p.Y177H 0.04 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 11 121475905 121475905 A - SORL1 Frame_Shift_Del p.M1581Cfs*34 0.35 TCGA-BH-A18G-01 11 122929470 122929470 T C HSPA8 Missense_Mutation p.I464M 0.41 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 11 123448212 123448212 C A GRAMD1B Missense_Mutation p.P54Q 0.11 deleterious(0.01) probably_damaging(1) TCGA-BH-A18G-01 11 123900338 123900338 C T OR10G8 Silent p.N3N 0.04 TCGA-BH-A18G-01 11 124949079 124949079 C T SLC37A2 Missense_Mutation p.T129I 0.38 deleterious(0) possibly_damaging(0.729) TCGA-BH-A18G-01 11 124949085 124949085 T A SLC37A2 Missense_Mutation p.L131H 0.39 deleterious(0) probably_damaging(0.94) TCGA-BH-A18G-01 11 126145284 126145284 C T FOXRED1 Nonsense_Mutation p.Q232* 0.40 TCGA-BH-A18G-01 11 128360416 128360416 A C ETS1 Silent p.S90S 0.06 TCGA-BH-A18G-01 11 12901337 12901337 A T TEAD1 Missense_Mutation p.N138I 0.35 tolerated(0.08) possibly_damaging(0.48) TCGA-BH-A18G-01 11 129748357 129748357 A G NFRKB Splice_Site p.X513_splice 0.05 TCGA-BH-A18G-01 11 129785682 129785682 A G PRDM10 Missense_Mutation p.I804T 0.35 tolerated(0.07) probably_damaging(0.99) TCGA-BH-A18G-01 11 130068494 130068494 C T ST14 Silent p.S554S 0.39 TCGA-BH-A18G-01 11 130342942 130342942 G A ADAMTS15 Missense_Mutation p.M693I 0.24 tolerated(0.26) benign(0.004) TCGA-BH-A18G-01 11 14512112 14512112 T C COPB1 Missense_Mutation p.Q202R 0.34 tolerated(0.44) benign(0.364) TCGA-BH-A18G-01 11 17515664 17515665 - A USH1C 3'Flank 0.33 TCGA-BH-A18G-01 11 18425290 18425290 G A LDHA Silent p.L243L 0.37 TCGA-BH-A18G-01 11 18467785 18467785 T C LDHC Missense_Mutation p.Y247H 0.03 deleterious(0.02) probably_damaging(0.947) TCGA-BH-A18G-01 11 18633099 18633099 T C SPTY2D1 Missense_Mutation p.Y630C 0.10 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 11 18956058 18956058 G - MRGPRX1 Frame_Shift_Del p.H92Ifs*10 0.22 TCGA-BH-A18G-01 11 19197517 19197517 A G ZDHHC13 3'UTR 0.36 TCGA-BH-A18G-01 11 20177892 20177892 C T DBX1 Silent p.L339L 0.31 TCGA-BH-A18G-01 11 212685 212685 G A RIC8A Missense_Mutation p.R385H 0.39 deleterious(0) probably_damaging(0.982) TCGA-BH-A18G-01 11 2411672 2411672 C A CD81 Missense_Mutation p.L33M 0.07 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 11 3023228 3023228 G A CARS Missense_Mutation p.T778I 0.34 tolerated(0.07) benign(0.013) TCGA-BH-A18G-01 11 32112926 32112926 G A RCN1 Missense_Mutation p.A62T 0.32 deleterious(0) probably_damaging(0.95) TCGA-BH-A18G-01 11 33565451 33565451 C T KIAA1549L Missense_Mutation p.T484I 0.37 tolerated_low_confidence(0.6) benign(0.004) TCGA-BH-A18G-01 11 34173969 34173969 G A ABTB2 Missense_Mutation p.R1015C 0.39 deleterious(0) probably_damaging(0.926) TCGA-BH-A18G-01 11 35457472 35457472 G A PAMR1 Missense_Mutation p.R455W 0.43 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 11 375759 375759 A G B4GALNT4 Missense_Mutation p.D324G 0.44 deleterious(0.02) possibly_damaging(0.636) TCGA-BH-A18G-01 11 418575 418575 G A ANO9 Silent p.C715C 0.41 TCGA-BH-A18G-01 11 418799 418799 C T ANO9 Missense_Mutation p.R684H 0.04 deleterious(0.01) probably_damaging(0.97) TCGA-BH-A18G-01 11 43342374 43342374 C T API5 Nonsense_Mutation p.R79* 0.41 TCGA-BH-A18G-01 11 43411286 43411286 C T TTC17 Missense_Mutation p.P112S 0.37 tolerated(0.28) benign(0.222) TCGA-BH-A18G-01 11 44289131 44289131 C T ALX4 Silent p.E273E 0.34 TCGA-BH-A18G-01 11 45891343 45891343 G T CRY2 Missense_Mutation p.W411L 0.38 deleterious(0) probably_damaging(0.958) TCGA-BH-A18G-01 11 46749707 46749707 G A F2 Missense_Mutation p.R431H 0.31 deleterious(0) probably_damaging(0.993) TCGA-BH-A18G-01 11 47182742 47182745 GTAA - C11orf49 Splice_Site p.X274_splice 0.31 TCGA-BH-A18G-01 11 47186970 47186970 A G ARFGAP2 3'UTR 0.37 TCGA-BH-A18G-01 11 47399861 47399861 G - SPI1 Frame_Shift_Del p.P15Lfs*172 0.43 TCGA-BH-A18G-01 11 47447428 47447428 C T PSMC3 Missense_Mutation p.S50N 0.11 tolerated(1) benign(0.001) TCGA-BH-A18G-01 11 47594883 47594883 C - KBTBD4 Frame_Shift_Del p.E402Rfs*27 0.34 TCGA-BH-A18G-01 11 5068682 5068683 - A OR52J3 Frame_Shift_Ins p.*312Ifs*? 0.21 TCGA-BH-A18G-01 11 5248264 5248264 A C HBB 5'UTR 0.40 TCGA-BH-A18G-01 11 532537 532537 A G HRAS 3'UTR 0.36 TCGA-BH-A18G-01 11 5363900 5363900 C T OR51B5 Missense_Mutation p.M285I 0.33 tolerated(0.05) benign(0.023) TCGA-BH-A18G-01 11 55135957 55135957 A G OR4A15 Missense_Mutation p.N200D 0.38 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-BH-A18G-01 11 55872855 55872855 T C OR8H2 Missense_Mutation p.Y113H 0.40 deleterious(0) benign(0.375) TCGA-BH-A18G-01 11 56057775 56057775 A C OR8H1 Missense_Mutation p.I255S 0.37 deleterious(0.03) benign(0.032) TCGA-BH-A18G-01 11 56058343 56058343 A G OR8H1 Silent p.L66L 0.36 TCGA-BH-A18G-01 11 56114010 56114010 A C OR8K1 Missense_Mutation p.T166P 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.586) TCGA-BH-A18G-01 11 56310647 56310647 C T OR5M11 Silent p.V29V 0.33 TCGA-BH-A18G-01 11 5653667 5653667 C T TRIM34 Nonsense_Mutation p.R36* 0.41 TCGA-BH-A18G-01 11 57518546 57518546 G A BTBD18 Nonsense_Mutation p.Q39* 0.34 TCGA-BH-A18G-01 11 5842325 5842325 T C OR52N2 Missense_Mutation p.Y254H 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-BH-A18G-01 11 58979700 58979700 A G MPEG1 Silent p.A213A 0.34 TCGA-BH-A18G-01 11 59574126 59574126 G A MRPL16 Silent p.Y150Y 0.40 TCGA-BH-A18G-01 11 60620807 60620807 C T PTGDR2 Missense_Mutation p.C130Y 0.25 deleterious(0.04) possibly_damaging(0.676) TCGA-BH-A18G-01 11 61017472 61017472 G A PGA5 Missense_Mutation p.A335T 0.42 deleterious(0.02) possibly_damaging(0.618) TCGA-BH-A18G-01 11 61081077 61081077 G A DDB1 Missense_Mutation p.R655C 0.37 deleterious(0) probably_damaging(0.993) TCGA-BH-A18G-01 11 61120477 61120477 A G CYB561A3 Silent p.N193N 0.37 TCGA-BH-A18G-01 11 61404623 61404623 G A RPLP0P2 RNA 0.43 TCGA-BH-A18G-01 11 61906201 61906201 C - INCENP Frame_Shift_Del p.E380Rfs*78 0.34 TCGA-BH-A18G-01 11 619328 619328 G A CDHR5 Silent p.S452S 0.39 TCGA-BH-A18G-01 11 62382392 62382392 G - ROM1 3'UTR 0.35 TCGA-BH-A18G-01 11 62394590 62394590 G A GANAB Missense_Mutation p.A773V 0.34 deleterious(0.04) benign(0.046) TCGA-BH-A18G-01 11 62416298 62416298 C T INTS5 Silent p.S418S 0.38 TCGA-BH-A18G-01 11 62434580 62434580 A G METTL12 3'UTR 0.25 TCGA-BH-A18G-01 11 64064700 64064700 G A KCNK4 Silent p.R141R 0.44 TCGA-BH-A18G-01 11 64087315 64087315 G T PRDX5 Missense_Mutation p.G94V 0.49 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 11 64390403 64390403 C T NRXN2 Missense_Mutation p.R1332Q 0.37 tolerated(0.51) possibly_damaging(0.556) TCGA-BH-A18G-01 11 64533557 64533557 G A SF1 Intron 0.50 TCGA-BH-A18G-01 11 64627634 64627634 G A EHD1 Missense_Mutation p.T226M 0.37 tolerated(0.16) possibly_damaging(0.836) TCGA-BH-A18G-01 11 6477399 6477399 C T TRIM3 Missense_Mutation p.R479H 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-BH-A18G-01 11 64875384 64875384 C T VPS51 Silent p.R205R 0.59 TCGA-BH-A18G-01 11 65346593 65346593 G A EHBP1L1 Missense_Mutation p.R50H 0.47 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 11 65352524 65352524 C T EHBP1L1 Missense_Mutation p.T1132M 0.23 deleterious(0.01) probably_damaging(0.92) TCGA-BH-A18G-01 11 65365835 65365835 C - MAP3K11 Frame_Shift_Del p.G824Afs*123 0.44 TCGA-BH-A18G-01 11 65392971 65392971 G A PCNXL3 Missense_Mutation p.R1042H 0.26 tolerated(0.06) benign(0.16) TCGA-BH-A18G-01 11 6579372 6579372 G A DNHD1 Silent p.V2949V 0.31 TCGA-BH-A18G-01 11 66460468 66460468 T C SPTBN2 Missense_Mutation p.D1653G 0.31 tolerated(0.44) probably_damaging(0.998) TCGA-BH-A18G-01 11 66619987 66619987 C T PC Missense_Mutation p.R583H 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 11 67072316 67072316 G T SSH3 Missense_Mutation p.E59D 0.31 tolerated(0.13) benign(0.008) TCGA-BH-A18G-01 11 67209552 67209552 C T CORO1B Missense_Mutation p.R70H 0.47 deleterious(0.02) probably_damaging(0.983) TCGA-BH-A18G-01 11 67274438 67274438 G A CDK2AP2 Missense_Mutation p.T120I 0.38 deleterious(0) probably_damaging(0.966) TCGA-BH-A18G-01 11 67925677 67925677 G T SUV420H1 Missense_Mutation p.N712K 0.31 deleterious(0) benign(0.184) TCGA-BH-A18G-01 11 68191149 68191149 G A LRP5 Missense_Mutation p.V1074I 0.47 tolerated(0.25) benign(0.111) TCGA-BH-A18G-01 11 70742676 70742676 C T SHANK2 Splice_Site p.X370_splice 0.40 TCGA-BH-A18G-01 11 71185449 71185449 G A NADSYN1 Silent p.G225G 0.40 TCGA-BH-A18G-01 11 71259915 71259915 G A KRTAP5-9 Missense_Mutation p.G71D 0.33 tolerated_low_confidence(0.23) unknown(0) TCGA-BH-A18G-01 11 72422518 72422518 A G ARAP1 Missense_Mutation p.V350A 0.38 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 11 73753145 73753145 T C C2CD3 Missense_Mutation p.T1872A 0.37 tolerated(0.69) benign(0.005) TCGA-BH-A18G-01 11 7441852 7441852 C T SYT9 Missense_Mutation p.H485Y 0.37 tolerated(0.21) probably_damaging(0.999) TCGA-BH-A18G-01 11 76372553 76372553 C A LRRC32 Splice_Site p.X29_splice 0.45 TCGA-BH-A18G-01 11 7660967 7660967 G A PPFIBP2 Missense_Mutation p.S414N 0.34 tolerated(0.45) benign(0.003) TCGA-BH-A18G-01 11 7723272 7723272 A G OVCH2 Silent p.L184L 0.38 TCGA-BH-A18G-01 11 78440505 78440505 C T TENM4 Missense_Mutation p.A1108T 0.42 deleterious(0) probably_damaging(0.961) TCGA-BH-A18G-01 11 7846708 7846708 T C OR5P3 Missense_Mutation p.N271S 0.37 deleterious(0) probably_damaging(0.955) TCGA-BH-A18G-01 11 8413872 8413872 T C STK33 3'UTR 0.36 TCGA-BH-A18G-01 11 85420387 85420388 - T SYTL2 Frame_Shift_Ins p.Q1001Tfs*35 0.39 TCGA-BH-A18G-01 11 8705820 8705820 C T RPL27A Intron 0.35 TCGA-BH-A18G-01 11 9165018 9165018 G A DENND5A Nonsense_Mutation p.Q1107* 0.36 TCGA-BH-A18G-01 11 92088179 92088179 G - FAT3 Frame_Shift_Del p.G969Vfs*17 0.31 TCGA-BH-A18G-01 11 93416894 93416894 A G KIAA1731 Missense_Mutation p.Y312C 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-BH-A18G-01 11 9501033 9501033 A G ZNF143 Silent p.G195G 0.38 TCGA-BH-A18G-01 11 96074878 96074878 C T MAML2 Missense_Mutation p.G61D 0.42 probably_damaging(0.989) TCGA-BH-A18G-01 11 96086710 96086710 T C CCDC82 3'UTR 0.33 TCGA-BH-A18G-01 11 99786844 99786844 T C CNTN5 Silent p.G212G 0.05 TCGA-BH-A18G-01 12 1005583 1005583 C T WNK1 Missense_Mutation p.A1977V 0.39 tolerated(0.61) benign(0.007) TCGA-BH-A18G-01 12 100613799 100613799 T - ACTR6 Frame_Shift_Del p.F314Lfs*6 0.30 TCGA-BH-A18G-01 12 104379425 104379425 G A TDG Missense_Mutation p.G337S 0.30 deleterious(0.02) possibly_damaging(0.45) TCGA-BH-A18G-01 12 105546180 105546180 T C KIAA1033 Silent p.P903P 0.36 TCGA-BH-A18G-01 12 105553823 105553823 A G KIAA1033 Missense_Mutation p.E986G 0.26 deleterious(0.03) possibly_damaging(0.62) TCGA-BH-A18G-01 12 106715444 106715444 A G TCP11L2 Missense_Mutation p.R199G 0.38 deleterious(0) possibly_damaging(0.515) TCGA-BH-A18G-01 12 108913234 108913234 G A FICD Silent p.T453T 0.41 TCGA-BH-A18G-01 12 109182841 109182841 C A SSH1 Silent p.V691V 0.41 TCGA-BH-A18G-01 12 109882288 109882288 G A MYO1H Missense_Mutation p.V967I 0.38 tolerated(0.28) benign(0.001) TCGA-BH-A18G-01 12 110354438 110354438 T C TCHP 3'UTR 0.42 TCGA-BH-A18G-01 12 111895157 111895157 G A ATXN2 Missense_Mutation p.T1126M 0.37 possibly_damaging(0.815) TCGA-BH-A18G-01 12 112485490 112485490 A - NAA25 Frame_Shift_Del p.F662Sfs*19 0.40 TCGA-BH-A18G-01 12 11420585 11420585 G A PRB3 Missense_Mutation p.R200C 0.23 deleterious(0.01) unknown(0) TCGA-BH-A18G-01 12 12022746 12022746 C T ETV6 Silent p.S284S 0.43 TCGA-BH-A18G-01 12 12037513 12037513 A G ETV6 Missense_Mutation p.N382D 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-BH-A18G-01 12 12038878 12038880 TAT AA ETV6 Frame_Shift_Del p.Y391Kfs*14 0.26 TCGA-BH-A18G-01 12 120622011 120622011 A G GCN1L1 Missense_Mutation p.I74T 0.31 benign(0.1) TCGA-BH-A18G-01 12 1213949 1213949 T C ERC1 Missense_Mutation p.S374P 0.38 tolerated(0.66) benign(0.078) TCGA-BH-A18G-01 12 122720397 122720397 C - VPS33A Frame_Shift_Del p.G459Afs*86 0.35 TCGA-BH-A18G-01 12 123187074 123187074 G A HCAR2 Missense_Mutation p.R253C 0.24 tolerated(0.17) possibly_damaging(0.806) TCGA-BH-A18G-01 12 123201375 123201375 G A HCAR3 5'UTR 0.36 TCGA-BH-A18G-01 12 123414588 123414588 T C ABCB9 Missense_Mutation p.H724R 0.36 deleterious(0) possibly_damaging(0.901) TCGA-BH-A18G-01 12 124317700 124317700 T A DNAH10 Missense_Mutation p.F1411I 0.48 probably_damaging(0.994) TCGA-BH-A18G-01 12 124419900 124419900 G A DNAH10 Missense_Mutation p.V4430I 0.34 probably_damaging(0.98) TCGA-BH-A18G-01 12 12483104 12483104 G A MANSC1 Missense_Mutation p.L385F 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-BH-A18G-01 12 125398030 125398030 A G UBC Silent p.S96S 0.39 TCGA-BH-A18G-01 12 132203999 132203999 A - SFSWAP Frame_Shift_Del p.N176Mfs*6 0.28 TCGA-BH-A18G-01 12 132325242 132325242 G A MMP17 Missense_Mutation p.A183T 0.47 deleterious(0.03) probably_damaging(0.987) TCGA-BH-A18G-01 12 133393373 133393373 C T GOLGA3 Silent p.T53T 0.28 TCGA-BH-A18G-01 12 16713448 16713448 G A LMO3 Silent p.C99C 0.35 TCGA-BH-A18G-01 12 19615620 19615620 G A AEBP2 Missense_Mutation p.R283H 0.06 tolerated_low_confidence(0.05) possibly_damaging(0.713) TCGA-BH-A18G-01 12 2074827 2074827 T C DCP1B Missense_Mutation p.Q140R 0.05 deleterious(0.03) benign(0.094) TCGA-BH-A18G-01 12 21608198 21608198 A G PYROXD1 Silent p.A207A 0.04 TCGA-BH-A18G-01 12 21681998 21681998 C T C12orf39 Missense_Mutation p.S91F 0.04 tolerated(0.23) benign(0.004) TCGA-BH-A18G-01 12 26275895 26275895 G T BHLHE41 Missense_Mutation p.P185T 0.38 tolerated(0.06) benign(0.091) TCGA-BH-A18G-01 12 26753017 26753017 A G ITPR2 Missense_Mutation p.M1235T 0.42 deleterious(0) possibly_damaging(0.777) TCGA-BH-A18G-01 12 2775892 2775892 C T CACNA1C Missense_Mutation p.R1571W 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 12 30822178 30822178 A G IPO8 Silent p.Y361Y 0.05 TCGA-BH-A18G-01 12 32761022 32761022 T C FGD4 Silent p.D375D 0.46 TCGA-BH-A18G-01 12 3757660 3757660 A G EFCAB4B Intron 0.23 TCGA-BH-A18G-01 12 3757717 3757717 T C EFCAB4B Missense_Mutation p.D370G 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 12 39734849 39734849 T C KIF21A Missense_Mutation p.K657E 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A18G-01 12 41419005 41419005 C T CNTN1 Silent p.V859V 0.40 TCGA-BH-A18G-01 12 43822533 43822533 C A ADAMTS20 Missense_Mutation p.A1187S 0.32 deleterious(0.02) possibly_damaging(0.668) TCGA-BH-A18G-01 12 44124175 44124175 A G PUS7L 3'UTR 0.34 TCGA-BH-A18G-01 12 44782462 44782462 A G TMEM117 3'UTR 0.07 TCGA-BH-A18G-01 12 4554553 4554553 G A FGF6 Missense_Mutation p.R62C 0.38 tolerated(0.2) benign(0.001) TCGA-BH-A18G-01 12 46599925 46599925 C T SLC38A1 Missense_Mutation p.R195H 0.34 deleterious(0.01) possibly_damaging(0.739) TCGA-BH-A18G-01 12 47178890 47178890 C A SLC38A4 Nonsense_Mutation p.G133* 0.37 TCGA-BH-A18G-01 12 48174437 48174437 C T SLC48A1 3'UTR 0.40 TCGA-BH-A18G-01 12 48362040 48362040 G A TMEM106C 3'UTR 0.08 TCGA-BH-A18G-01 12 48531564 48531564 G A PFKM Missense_Mutation p.A404T 0.36 tolerated(0.12) possibly_damaging(0.895) TCGA-BH-A18G-01 12 4870217 4870217 G A GALNT8 Missense_Mutation p.A423T 0.33 tolerated(0.39) benign(0.014) TCGA-BH-A18G-01 12 4920419 4920419 G A KCNA6 Silent p.S404S 0.39 TCGA-BH-A18G-01 12 49435219 49435219 C - KMT2D Frame_Shift_Del p.A2112Hfs*32 0.43 TCGA-BH-A18G-01 12 49446809 49446809 T A KMT2D Missense_Mutation p.N334I 0.37 unknown(0) TCGA-BH-A18G-01 12 49937857 49937857 T C KCNH3 Splice_Site p.X327_splice 0.35 TCGA-BH-A18G-01 12 51467703 51467703 T C CSRNP2 Missense_Mutation p.Y105C 0.48 deleterious(0) probably_damaging(0.991) TCGA-BH-A18G-01 12 51489014 51489014 C T TFCP2 3'UTR 0.32 TCGA-BH-A18G-01 12 5153915 5153915 G A KCNA5 Missense_Mutation p.R201H 0.44 tolerated(0.05) probably_damaging(0.932) TCGA-BH-A18G-01 12 51773595 51773595 G A GALNT6 5'UTR 0.38 TCGA-BH-A18G-01 12 51857480 51857480 A T SLC4A8 Missense_Mutation p.E444V 0.41 deleterious(0) possibly_damaging(0.753) TCGA-BH-A18G-01 12 52822086 52822086 C T KRT75 Missense_Mutation p.V446M 0.42 tolerated(0.27) possibly_damaging(0.473) TCGA-BH-A18G-01 12 53073854 53073854 A G KRT1 Silent p.G93G 0.38 TCGA-BH-A18G-01 12 53460125 53460125 C T SPRYD3 Silent p.E389E 0.38 TCGA-BH-A18G-01 12 53803298 53803298 G A SP1 Missense_Mutation p.R666H 0.05 deleterious(0) benign(0.013) TCGA-BH-A18G-01 12 53879891 53879891 A G MAP3K12 Missense_Mutation p.M257T 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 12 54910761 54910761 A G NCKAP1L Silent p.G360G 0.41 TCGA-BH-A18G-01 12 55820818 55820818 G A OR6C76 Missense_Mutation p.A261T 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-BH-A18G-01 12 56115678 56115679 - G RDH5 Frame_Shift_Ins p.Y175Lfs*13 0.26 TCGA-BH-A18G-01 12 56488228 56488228 C T ERBB3 Missense_Mutation p.P583S 0.44 deleterious(0.03) probably_damaging(0.917) TCGA-BH-A18G-01 12 57432356 57432356 C T MYO1A Missense_Mutation p.A534T 0.39 tolerated(0.08) benign(0.11) TCGA-BH-A18G-01 12 57490460 57490460 C T STAT6 Silent p.S813S 0.38 TCGA-BH-A18G-01 12 57559871 57559871 G A LRP1 Silent p.Q892Q 0.35 TCGA-BH-A18G-01 12 57892027 57892027 T C MARS Silent p.G286G 0.05 TCGA-BH-A18G-01 12 58000854 58000854 G A DTX3 Missense_Mutation p.A70T 0.39 tolerated(0.43) benign(0.001) TCGA-BH-A18G-01 12 59282657 59282657 A G LRIG3 Silent p.N249N 0.03 TCGA-BH-A18G-01 12 6143979 6143979 G T VWF Silent p.R854R 0.39 TCGA-BH-A18G-01 12 6457217 6457217 G A SCNN1A Missense_Mutation p.S670F 0.36 deleterious(0) possibly_damaging(0.807) TCGA-BH-A18G-01 12 64668730 64668730 T G C12orf56 Missense_Mutation p.K352T 0.04 tolerated(0.29) benign(0.009) TCGA-BH-A18G-01 12 66725187 66725187 G A HELB Missense_Mutation p.S975N 0.34 tolerated(0.21) benign(0.006) TCGA-BH-A18G-01 12 6749540 6749540 A G ACRBP Missense_Mutation p.L409P 0.04 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 12 6776738 6776738 T A ZNF384 3'UTR 0.28 TCGA-BH-A18G-01 12 6787583 6787583 G A ZNF384 Silent p.T132T 0.41 TCGA-BH-A18G-01 12 6924043 6924043 G - CD4 Frame_Shift_Del p.K167Rfs*31 0.51 TCGA-BH-A18G-01 12 6933063 6933063 G T GPR162 5'UTR 0.50 TCGA-BH-A18G-01 12 7050587 7050587 G A ATN1 Missense_Mutation p.A1137T 0.45 probably_damaging(0.996) TCGA-BH-A18G-01 12 70933483 70933483 T C PTPRB Silent p.P1900P 0.05 TCGA-BH-A18G-01 12 72366385 72366385 C A TPH2 Missense_Mutation p.P232H 0.38 deleterious(0.01) probably_damaging(0.954) TCGA-BH-A18G-01 12 7242820 7242820 C A C1R Missense_Mutation p.G85W 0.48 tolerated(0.08) probably_damaging(1) TCGA-BH-A18G-01 12 7531781 7531781 T C CD163L1 Missense_Mutation p.N722D 0.40 tolerated(0.48) benign(0.115) TCGA-BH-A18G-01 12 75816802 75816802 C T GLIPR1L2 Intron 0.35 TCGA-BH-A18G-01 12 85255355 85255355 G T SLC6A15 3'UTR 0.37 TCGA-BH-A18G-01 12 89996933 89996933 G A ATP2B1 Nonsense_Mutation p.Q983* 0.35 TCGA-BH-A18G-01 12 93793183 93793183 T C NUDT4 3'UTR 0.07 TCGA-BH-A18G-01 12 94965228 94965228 T C TMCC3 Missense_Mutation p.M473V 0.40 tolerated(1) benign(0) TCGA-BH-A18G-01 12 95566382 95566382 A G FGD6 Silent p.D860D 0.04 TCGA-BH-A18G-01 12 992227 992227 T C WNK1 Splice_Site p.X1163_splice 0.32 TCGA-BH-A18G-01 13 101266664 101266664 G A TMTC4 Silent p.H619H 0.43 TCGA-BH-A18G-01 13 101287307 101287307 C T TMTC4 Missense_Mutation p.G449R 0.33 tolerated(0.59) benign(0.005) TCGA-BH-A18G-01 13 103515094 103515094 C T BIVM-ERCC5 Missense_Mutation p.S958F 0.43 tolerated_low_confidence(0.11) possibly_damaging(0.899) TCGA-BH-A18G-01 13 109459037 109459037 C T MYO16 Missense_Mutation p.A229V 0.34 deleterious(0.03) possibly_damaging(0.892) TCGA-BH-A18G-01 13 109707900 109707900 T C MYO16 Missense_Mutation p.Y1076H 0.40 tolerated(0.56) benign(0.068) TCGA-BH-A18G-01 13 109772780 109772780 A G MYO16 Silent p.L1145L 0.05 TCGA-BH-A18G-01 13 109779750 109779750 G A MYO16 Silent p.S1279S 0.33 TCGA-BH-A18G-01 13 111138064 111138064 G T COL4A2 Missense_Mutation p.G1030C 0.40 probably_damaging(0.989) TCGA-BH-A18G-01 13 111896284 111896284 G A ARHGEF7 Silent p.T296T 0.39 TCGA-BH-A18G-01 13 113777177 113777177 G A F10 Missense_Mutation p.R3H 0.43 tolerated_low_confidence(0.16) possibly_damaging(0.84) TCGA-BH-A18G-01 13 113801805 113801805 G T F10 Missense_Mutation p.R287M 0.37 tolerated(0.11) probably_damaging(0.97) TCGA-BH-A18G-01 13 114294635 114294635 T - TFDP1 3'UTR 0.24 TCGA-BH-A18G-01 13 114322116 114322116 G A GRK1 Missense_Mutation p.V139M 0.38 tolerated(0.11) benign(0.027) TCGA-BH-A18G-01 13 20279944 20279944 T C PSPC1 Missense_Mutation p.N415S 0.19 tolerated(0.2) benign(0.004) TCGA-BH-A18G-01 13 21417072 21417072 G A XPO4 Missense_Mutation p.A230V 0.42 tolerated(0.34) benign(0.235) TCGA-BH-A18G-01 13 21442809 21442809 C T XPO4 Missense_Mutation p.R34H 0.38 deleterious(0.01) probably_damaging(0.921) TCGA-BH-A18G-01 13 23911836 23911836 A G SACS Missense_Mutation p.V2060A 0.32 probably_damaging(0.978) TCGA-BH-A18G-01 13 23912644 23912644 C T SACS Missense_Mutation p.A1791T 0.35 benign(0.001) TCGA-BH-A18G-01 13 25670802 25670802 A - PABPC3 Frame_Shift_Del p.M158* 0.32 TCGA-BH-A18G-01 13 28197399 28197399 G A POLR1D 3'UTR 0.32 TCGA-BH-A18G-01 13 28498618 28498618 G A PDX1 Missense_Mutation p.G211D 0.38 tolerated(0.16) benign(0.035) TCGA-BH-A18G-01 13 32836505 32836505 G C FRY Missense_Mutation p.A2558P 0.42 tolerated_low_confidence(0.17) benign(0.066) TCGA-BH-A18G-01 13 33703686 33703686 C T STARD13 Silent p.P376P 0.30 TCGA-BH-A18G-01 13 36229853 36229853 C T NBEA Missense_Mutation p.R2756W 0.09 deleterious(0) probably_damaging(0.952) TCGA-BH-A18G-01 13 36776201 36776201 A G SOHLH2 Silent p.D103D 0.37 TCGA-BH-A18G-01 13 37577085 37577085 G A EXOSC8 Missense_Mutation p.A45T 0.35 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 13 41885599 41885599 C T NAA16 5'UTR 0.25 TCGA-BH-A18G-01 13 43537413 43537414 - T EPSTI1 Frame_Shift_Ins p.M156Nfs*11 0.30 TCGA-BH-A18G-01 13 44456417 44456417 A G LACC1 Missense_Mutation p.D220G 0.33 deleterious(0) probably_damaging(0.974) TCGA-BH-A18G-01 13 52026593 52026593 G T INTS6 Silent p.T23T 0.37 TCGA-BH-A18G-01 13 52763962 52763962 T C MRPS31P5 RNA 0.39 TCGA-BH-A18G-01 13 53298181 53298181 C T LECT1 Missense_Mutation p.R140H 0.35 tolerated(0.67) benign(0.013) TCGA-BH-A18G-01 13 75923344 75923344 G C TBC1D4 Missense_Mutation p.P457R 0.31 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 13 80911238 80911238 G A SPRY2 Silent p.C201C 0.31 TCGA-BH-A18G-01 13 84453605 84453605 C T SLITRK1 Missense_Mutation p.A680T 0.23 tolerated(0.38) benign(0.002) TCGA-BH-A18G-01 13 95830046 95830046 C T ABCC4 Missense_Mutation p.A548T 0.04 deleterious(0) probably_damaging(0.982) TCGA-BH-A18G-01 14 101348856 101348856 C T RTL1 Missense_Mutation p.R757H 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 14 102471153 102471153 C T DYNC1H1 Missense_Mutation p.L1702F 0.34 probably_damaging(1) TCGA-BH-A18G-01 14 102964647 102964647 G A TECPR2 3'UTR 0.48 TCGA-BH-A18G-01 14 105614670 105614670 G A JAG2 Silent p.C709C 0.33 TCGA-BH-A18G-01 14 105615580 105615580 G A JAG2 Silent p.C560C 0.42 TCGA-BH-A18G-01 14 105954583 105954583 G A CRIP1 Missense_Mutation p.G41R 0.39 deleterious(0.04) possibly_damaging(0.539) TCGA-BH-A18G-01 14 106994247 106994247 C A IGHV3-48 Missense_Mutation p.W7C 0.37 tolerated_low_confidence(0.14) benign(0.076) TCGA-BH-A18G-01 14 20781842 20781842 A G CCNB1IP1 Missense_Mutation p.M139T 0.38 tolerated(0.13) benign(0.275) TCGA-BH-A18G-01 14 20925670 20925670 C T APEX1 3'UTR 0.34 TCGA-BH-A18G-01 14 21555234 21555234 C T ARHGEF40 Missense_Mutation p.R1405W 0.04 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 14 21870134 21870134 T - CHD8 Frame_Shift_Del p.G1349Vfs*35 0.30 TCGA-BH-A18G-01 14 22265499 22265499 C T TRAV8-1 5'UTR 0.44 TCGA-BH-A18G-01 14 23249244 23249244 A - SLC7A7 Frame_Shift_Del p.N173Tfs*23 0.28 TCGA-BH-A18G-01 14 23393914 23393914 A G PRMT5 Missense_Mutation p.L315P 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 14 23608665 23608665 G - SLC7A8 Frame_Shift_Del p.Q294Rfs*11 0.31 TCGA-BH-A18G-01 14 23745735 23745735 G A HOMEZ Silent p.G234G 0.36 TCGA-BH-A18G-01 14 23816858 23816858 G A SLC22A17 Silent p.L343L 0.37 TCGA-BH-A18G-01 14 23830036 23830036 G A EFS Silent p.L9L 0.42 TCGA-BH-A18G-01 14 24572012 24572012 C T PCK2 Missense_Mutation p.R429C 0.35 deleterious(0.02) possibly_damaging(0.664) TCGA-BH-A18G-01 14 32561797 32561797 C A ARHGAP5 Nonsense_Mutation p.S641* 0.30 TCGA-BH-A18G-01 14 38724270 38724270 G A CLEC14A Missense_Mutation p.P320S 0.31 tolerated_low_confidence(1) benign(0) TCGA-BH-A18G-01 14 45542735 45542735 C T FAM179B Missense_Mutation p.L1712F 0.37 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.32 TCGA-BH-A18G-01 14 50133121 50133121 A G POLE2 Missense_Mutation p.I168T 0.04 deleterious(0) benign(0.158) TCGA-BH-A18G-01 14 51058288 51058288 T C ATL1 Silent p.F151F 0.35 TCGA-BH-A18G-01 14 51716427 51716427 C T TMX1 Missense_Mutation p.A203V 0.35 tolerated(0.29) benign(0.05) TCGA-BH-A18G-01 14 52741700 52741700 T A PTGDR 3'UTR 0.45 TCGA-BH-A18G-01 14 55655899 55655899 C A DLGAP5 Splice_Site 0.39 TCGA-BH-A18G-01 14 58599980 58599980 A T C14orf37 Silent p.A483A 0.38 TCGA-BH-A18G-01 14 60752634 60752634 C G PPM1A Intron 0.50 TCGA-BH-A18G-01 14 62245578 62245578 G A SNAPC1 Missense_Mutation p.A259T 0.42 deleterious(0) probably_damaging(0.983) TCGA-BH-A18G-01 14 65260252 65260252 C T SPTB Missense_Mutation p.G710E 0.31 deleterious(0) possibly_damaging(0.768) TCGA-BH-A18G-01 14 68151905 68151905 C T RDH11 Silent p.T227T 0.37 TCGA-BH-A18G-01 14 69847202 69847202 G A ERH 3'UTR 0.38 TCGA-BH-A18G-01 14 73959452 73959452 T A HEATR4 Intron 0.40 TCGA-BH-A18G-01 14 74194160 74194160 C T ELMSAN1 Splice_Site p.X721_splice 0.22 TCGA-BH-A18G-01 14 74413076 74413076 T - FAM161B Frame_Shift_Del p.N159Tfs*29 0.23 TCGA-BH-A18G-01 14 75580950 75580950 A G NEK9 Missense_Mutation p.Y277H 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 14 75904745 75904745 G A JDP2 Missense_Mutation p.R52H 0.33 tolerated(0.48) benign(0.001) TCGA-BH-A18G-01 14 77242496 77242496 A G VASH1 Silent p.S264S 0.44 TCGA-BH-A18G-01 14 79433691 79433691 C T NRXN3 Missense_Mutation p.T600I 0.34 deleterious(0.01) probably_damaging(0.936) TCGA-BH-A18G-01 14 80328354 80328354 C T NRXN3 3'UTR 0.33 TCGA-BH-A18G-01 14 88935948 88935948 G T PTPN21 Missense_Mutation p.L1044M 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 14 88945437 88945437 T C PTPN21 Missense_Mutation p.T780A 0.54 tolerated_low_confidence(0.91) benign(0) TCGA-BH-A18G-01 14 91372562 91372562 T G RPS6KA5 Missense_Mutation p.K296N 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 14 91927861 91927861 G A SMEK1 Missense_Mutation p.T739M 0.14 tolerated(0.2) possibly_damaging(0.46) TCGA-BH-A18G-01 14 93649593 93649593 T C MOAP1 Missense_Mutation p.Y332C 0.39 deleterious(0) benign(0.086) TCGA-BH-A18G-01 14 95578541 95578541 G A DICER1 Missense_Mutation p.A695V 0.40 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 14 95597888 95597888 A G DICER1 Silent p.S132S 0.35 TCGA-BH-A18G-01 14 95884327 95884327 T C SYNE3 Missense_Mutation p.R922G 0.44 deleterious(0) possibly_damaging(0.864) TCGA-BH-A18G-01 15 100514630 100514630 G A ADAMTS17 Missense_Mutation p.R1089C 0.49 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-BH-A18G-01 15 20489426 20489426 C G CHEK2P2 RNA 0.07 TCGA-BH-A18G-01 15 22709989 22709989 C G AC116165.1 5'Flank 0.56 TCGA-BH-A18G-01 15 22925811 22925811 C T CYFIP1 Missense_Mutation p.A10V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 15 28769148 28769148 C - GOLGA8G Frame_Shift_Del p.E450Rfs*20 0.40 TCGA-BH-A18G-01 15 29406115 29406115 G - APBA2 Frame_Shift_Del p.G693Afs*24 0.38 TCGA-BH-A18G-01 15 32450726 32450726 C T CHRNA7 Silent p.L267L 0.26 TCGA-BH-A18G-01 15 33359221 33359221 C T FMN1 Missense_Mutation p.A289T 0.33 tolerated(0.63) unknown(0) TCGA-BH-A18G-01 15 33359244 33359244 C T FMN1 Missense_Mutation p.R281H 0.30 deleterious(0) unknown(0) TCGA-BH-A18G-01 15 34137183 34137183 A G RYR3 Missense_Mutation p.M4473V 0.35 benign(0.305) TCGA-BH-A18G-01 15 34654781 34654781 T C LPCAT4 Missense_Mutation p.M293V 0.32 deleterious(0) probably_damaging(0.977) TCGA-BH-A18G-01 15 40018911 40018911 T C FSIP1 Missense_Mutation p.Y310C 0.10 deleterious(0.02) probably_damaging(1) TCGA-BH-A18G-01 15 40512768 40512768 A - BUB1B Frame_Shift_Del p.D989Mfs*13 0.30 TCGA-BH-A18G-01 15 40914893 40914893 A G CASC5 Missense_Mutation p.S837G 0.38 tolerated(0.25) benign(0.112) TCGA-BH-A18G-01 15 41571019 41571019 G A CHP1 Missense_Mutation p.A156T 0.38 tolerated(0.18) benign(0.135) TCGA-BH-A18G-01 15 42114459 42114459 T C MAPKBP1 Missense_Mutation p.I1029T 0.37 tolerated(0.39) benign(0.011) TCGA-BH-A18G-01 15 43028135 43028135 G A CDAN1 Silent p.G237G 0.39 TCGA-BH-A18G-01 15 43067910 43067910 A G TTBK2 Missense_Mutation p.M474T 0.05 tolerated(0.17) benign(0.179) TCGA-BH-A18G-01 15 43813746 43813747 - C MAP1A Frame_Shift_Ins p.T28Hfs*40 0.30 TCGA-BH-A18G-01 15 44898236 44898236 T C SPG11 Silent p.T1169T 0.37 TCGA-BH-A18G-01 15 49033711 49033711 A G CEP152 Intron 0.42 TCGA-BH-A18G-01 15 49081165 49081165 G T CEP152 Missense_Mutation p.L336M 0.39 tolerated(1) benign(0.161) TCGA-BH-A18G-01 15 50899421 50899421 A G TRPM7 Silent p.T895T 0.04 TCGA-BH-A18G-01 15 55912892 55912892 A - PRTG Frame_Shift_Del p.F1056Sfs*30 0.49 TCGA-BH-A18G-01 15 57921967 57921967 C T GCOM1 Missense_Mutation p.T198M 0.40 deleterious(0) probably_damaging(0.927) TCGA-BH-A18G-01 15 57967241 57967241 G T GCOM1 Nonsense_Mutation p.G427* 0.37 TCGA-BH-A18G-01 15 58006972 58006972 A G POLR2M 3'UTR 0.08 TCGA-BH-A18G-01 15 58007033 58007033 G A POLR2M 3'UTR 0.17 TCGA-BH-A18G-01 15 62146723 62146723 G A VPS13C Missense_Mutation p.T3732M 0.06 tolerated(0.3) benign(0.004) TCGA-BH-A18G-01 15 63058521 63058521 C T TLN2 Missense_Mutation p.A1699V 0.12 tolerated(0.1) benign(0.04) TCGA-BH-A18G-01 15 65477565 65477565 G A CLPX 5'UTR 0.29 TCGA-BH-A18G-01 15 65917242 65917242 T C SLC24A1 Missense_Mutation p.V275A 0.33 benign(0.002) TCGA-BH-A18G-01 15 66170177 66170177 G A RAB11A Nonsense_Mutation p.W105* 0.36 TCGA-BH-A18G-01 15 68119168 68119168 C T SKOR1 Intron 0.36 TCGA-BH-A18G-01 15 69715526 69715526 A G KIF23 Missense_Mutation p.M198V 0.33 deleterious(0.03) benign(0.042) TCGA-BH-A18G-01 15 72197349 72197349 T C MYO9A Splice_Site p.X896_splice 0.37 TCGA-BH-A18G-01 15 72640419 72640419 A G HEXA Missense_Mutation p.F348S 0.31 deleterious(0.02) probably_damaging(0.918) TCGA-BH-A18G-01 15 73044640 73044640 G A ADPGK 3'UTR 0.23 TCGA-BH-A18G-01 15 73615749 73615749 T C HCN4 Silent p.P895P 0.24 TCGA-BH-A18G-01 15 74911557 74911557 A G CLK3 Missense_Mutation p.Y155C 0.05 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-BH-A18G-01 15 75641560 75641560 C T NEIL1 Missense_Mutation p.P105L 0.14 tolerated(0.17) benign(0.002) TCGA-BH-A18G-01 15 77057327 77057327 A G SCAPER Missense_Mutation p.L567S 0.34 tolerated(0.37) probably_damaging(0.913) TCGA-BH-A18G-01 15 77770796 77770796 A G HMG20A Missense_Mutation p.H284R 0.08 deleterious(0.01) possibly_damaging(0.791) TCGA-BH-A18G-01 15 78465994 78465994 T C ACSBG1 Missense_Mutation p.Y677C 0.42 deleterious(0.01) probably_damaging(0.947) TCGA-BH-A18G-01 15 85438726 85438727 - G SLC28A1 Intron 0.20 TCGA-BH-A18G-01 15 85681314 85681314 T A PDE8A 3'UTR 0.24 TCGA-BH-A18G-01 15 89002773 89002773 G A MRPL46 3'UTR 0.35 TCGA-BH-A18G-01 15 90617350 90617350 G A ZNF710 Silent p.V551V 0.28 TCGA-BH-A18G-01 15 91436997 91436997 G T FES Missense_Mutation p.R720I 0.55 deleterious(0) possibly_damaging(0.742) TCGA-BH-A18G-01 15 91450543 91450543 G A MAN2A2 Silent p.S338S 0.31 TCGA-BH-A18G-01 16 11852388 11852388 T C ZC3H7A Missense_Mutation p.N776S 0.36 deleterious(0.02) possibly_damaging(0.9) TCGA-BH-A18G-01 16 1261574 1261574 C T CACNA1H Nonsense_Mutation p.R1482* 0.45 TCGA-BH-A18G-01 16 12875075 12875075 C T CPPED1 Missense_Mutation p.V86I 0.06 tolerated(0.25) possibly_damaging(0.683) TCGA-BH-A18G-01 16 133162 133163 - C MPG Frame_Shift_Ins p.R145Pfs*88 0.42 TCGA-BH-A18G-01 16 1501628 1501628 C T CLCN7 Silent p.P481P 0.30 TCGA-BH-A18G-01 16 15157141 15157141 C A RRN3 Splice_Site p.X569_splice 0.34 TCGA-BH-A18G-01 16 15162055 15162055 T C RRN3 Silent p.S508S 0.27 TCGA-BH-A18G-01 16 15831474 15831474 C T MYH11 Missense_Mutation p.R1049Q 0.05 probably_damaging(0.996) TCGA-BH-A18G-01 16 16228325 16228325 G A ABCC1 Missense_Mutation p.G1362D 0.31 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 16 21995786 21995786 T G PDZD9 Silent p.G139G 0.42 TCGA-BH-A18G-01 16 22295258 22295258 C A EEF2K Silent p.R707R 0.37 TCGA-BH-A18G-01 16 223495 223495 A G HBA2 Missense_Mutation p.T109A 0.34 tolerated(0.05) benign(0.239) TCGA-BH-A18G-01 16 2283890 2283890 C T E4F1 Missense_Mutation p.A425V 0.38 tolerated(0.15) benign(0.002) TCGA-BH-A18G-01 16 2285081 2285081 G A E4F1 Splice_Site p.X646_splice 0.39 TCGA-BH-A18G-01 16 23391803 23391803 T G SCNN1B Missense_Mutation p.L535R 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 16 23456454 23456454 C G COG7 Missense_Mutation p.R117T 0.05 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 16 23464406 23464406 C T COG7 5'UTR 0.24 TCGA-BH-A18G-01 16 2522741 2522741 A T NTN3 Missense_Mutation p.N323I 0.27 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 16 27221801 27221801 C A KDM8 Silent p.A157A 0.46 TCGA-BH-A18G-01 16 27221874 27221874 A G KDM8 Missense_Mutation p.I182V 0.43 tolerated(0.9) benign(0.003) TCGA-BH-A18G-01 16 27357881 27357881 A G IL4R Missense_Mutation p.Y152C 0.39 tolerated(0.06) possibly_damaging(0.871) TCGA-BH-A18G-01 16 27512666 27512666 C A GTF3C1 Splice_Site p.X636_splice 0.36 TCGA-BH-A18G-01 16 28511194 28511194 C T IL27 Silent p.E170E 0.37 TCGA-BH-A18G-01 16 29828310 29828312 AAG - PAGR1 In_Frame_Del p.E160del 0.43 TCGA-BH-A18G-01 16 29992997 29992997 C T TAOK2 Missense_Mutation p.P224L 0.38 deleterious(0) probably_damaging(0.917) TCGA-BH-A18G-01 16 30080962 30080962 C T ALDOA Missense_Mutation p.A310V 0.40 tolerated(0.12) benign(0.08) TCGA-BH-A18G-01 16 30999506 30999506 G A HSD3B7 3'UTR 0.43 TCGA-BH-A18G-01 16 31072662 31072662 C T ZNF668 Silent p.T552T 0.36 TCGA-BH-A18G-01 16 31091534 31091534 C T ZNF646 Missense_Mutation p.R1297W 0.33 deleterious(0.03) benign(0.011) TCGA-BH-A18G-01 16 31141589 31141591 AGA - KAT8 In_Frame_Del p.K306del 0.45 TCGA-BH-A18G-01 16 31160508 31160508 G A PRSS36 Missense_Mutation p.A53V 0.31 deleterious(0.01) benign(0.258) TCGA-BH-A18G-01 16 31342567 31342567 C T ITGAM Silent p.L1121L 0.50 TCGA-BH-A18G-01 16 31374656 31374656 C T ITGAX Silent p.H557H 0.34 TCGA-BH-A18G-01 16 314098 314098 C T ITFG3 Silent p.S424S 0.37 TCGA-BH-A18G-01 16 31477362 31477362 C T ARMC5 Intron 0.40 TCGA-BH-A18G-01 16 314835 314835 C T ITFG3 Silent p.H491H 0.44 TCGA-BH-A18G-01 16 4430999 4430999 C T VASN Missense_Mutation p.R41C 0.19 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 16 47682455 47682455 G A PHKB Silent p.Q540Q 0.34 TCGA-BH-A18G-01 16 48149520 48149520 G A ABCC12 Missense_Mutation p.R599W 0.41 deleterious(0.02) benign(0.421) TCGA-BH-A18G-01 16 50324419 50324419 G A ADCY7 Missense_Mutation p.V75M 0.37 deleterious(0.05) benign(0.046) TCGA-BH-A18G-01 16 50324499 50324499 G T ADCY7 Missense_Mutation p.W101C 0.44 deleterious(0) probably_damaging(0.976) TCGA-BH-A18G-01 16 50325691 50325691 G A ADCY7 Silent p.L140L 0.05 TCGA-BH-A18G-01 16 50783750 50783750 A G CYLD Silent p.G47G 0.34 TCGA-BH-A18G-01 16 50785600 50785600 T C CYLD Missense_Mutation p.V197A 0.06 tolerated(0.08) probably_damaging(0.995) TCGA-BH-A18G-01 16 51185093 51185093 C T SALL1 Silent p.S20S 0.34 TCGA-BH-A18G-01 16 53283933 53283933 A G CHD9 Silent p.T1272T 0.36 TCGA-BH-A18G-01 16 56487178 56487178 T C OGFOD1 Missense_Mutation p.V53A 0.32 tolerated(1) benign(0) TCGA-BH-A18G-01 16 56678051 56678051 C T MT1A 3'Flank 0.30 TCGA-BH-A18G-01 16 57085533 57085533 A C NLRC5 Missense_Mutation p.Q1169P 0.07 deleterious(0.01) possibly_damaging(0.703) TCGA-BH-A18G-01 16 57272810 57272810 G A RSPRY1 Missense_Mutation p.A552T 0.35 tolerated(0.12) probably_damaging(0.979) TCGA-BH-A18G-01 16 58314231 58314231 T C PRSS54 Missense_Mutation p.E362G 0.34 deleterious(0.04) benign(0.063) TCGA-BH-A18G-01 16 58581178 58581178 A G CNOT1 Missense_Mutation p.L1221P 0.32 deleterious(0) probably_damaging(0.987) TCGA-BH-A18G-01 16 67325658 67325658 G - KCTD19 Frame_Shift_Del p.V768Wfs*38 0.33 TCGA-BH-A18G-01 16 67684005 67684005 C T RLTPR Silent p.H712H 0.33 TCGA-BH-A18G-01 16 67709330 67709330 G C GFOD2 Missense_Mutation p.P296A 0.38 tolerated(0.71) benign(0) TCGA-BH-A18G-01 16 67919560 67919560 G - NRN1L Intron 0.23 TCGA-BH-A18G-01 16 68265114 68265114 T C ESRP2 Missense_Mutation p.S560G 0.34 tolerated(0.13) probably_damaging(0.994) TCGA-BH-A18G-01 16 68961618 68961618 G A TANGO6 Missense_Mutation p.V759I 0.37 tolerated(0.15) benign(0.005) TCGA-BH-A18G-01 16 68961634 68961634 A G TANGO6 Missense_Mutation p.Q764R 0.31 tolerated(0.27) benign(0.001) TCGA-BH-A18G-01 16 70292030 70292030 G A AARS Nonsense_Mutation p.R695* 0.39 TCGA-BH-A18G-01 16 70722098 70722098 G A VAC14 Intron 0.39 TCGA-BH-A18G-01 16 71007882 71007882 C A HYDIN Missense_Mutation p.K1693N 0.11 probably_damaging(0.978) TCGA-BH-A18G-01 16 71663366 71663366 C T MARVELD3 Silent p.C188C 0.34 TCGA-BH-A18G-01 16 71894267 71894267 A G ZNF821 Missense_Mutation p.M298T 0.40 deleterious(0.01) possibly_damaging(0.625) TCGA-BH-A18G-01 16 72132658 72132658 G A DHX38 Missense_Mutation p.R244Q 0.09 tolerated(0.3) benign(0.013) TCGA-BH-A18G-01 16 72822441 72822441 T - ZFHX3 Frame_Shift_Del p.K3245Rfs*39 0.37 TCGA-BH-A18G-01 16 72991442 72991442 T A ZFHX3 Missense_Mutation p.Q868L 0.37 probably_damaging(0.953) TCGA-BH-A18G-01 16 72991573 72991573 G A ZFHX3 Silent p.T824T 0.39 TCGA-BH-A18G-01 16 75271166 75271166 G A BCAR1 Missense_Mutation p.P283L 0.42 deleterious(0) possibly_damaging(0.697) TCGA-BH-A18G-01 16 75563186 75563186 C T CHST5 Missense_Mutation p.R366H 0.30 deleterious(0.03) benign(0.024) TCGA-BH-A18G-01 16 75600411 75600411 C G GABARAPL2 Missense_Mutation p.H9Q 0.26 deleterious(0.02) benign(0.028) TCGA-BH-A18G-01 16 75690320 75690320 A - TERF2IP Frame_Shift_Del p.N339Ifs*12 0.32 TCGA-BH-A18G-01 16 84228109 84228109 T C ADAD2 Silent p.T232T 0.41 TCGA-BH-A18G-01 16 84488448 84488448 G A ATP2C2 Missense_Mutation p.V669M 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 16 85695039 85695039 C A GSE1 Missense_Mutation p.P643H 0.50 tolerated(0.09) possibly_damaging(0.719) TCGA-BH-A18G-01 16 88503133 88503133 G T ZNF469 Missense_Mutation p.Q3057H 0.29 benign(0.031) TCGA-BH-A18G-01 16 88789042 88789042 G A PIEZO1 Missense_Mutation p.A1575V 0.30 tolerated(0.3) benign(0.033) TCGA-BH-A18G-01 16 88871904 88871904 C A CDT1 Missense_Mutation p.P182Q 0.44 deleterious(0) probably_damaging(0.982) TCGA-BH-A18G-01 16 88932785 88932785 A G PABPN1L Missense_Mutation p.L77P 0.42 tolerated(0.13) benign(0.052) TCGA-BH-A18G-01 16 89178653 89178653 A G ACSF3 Missense_Mutation p.R326G 0.30 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 16 89245946 89245946 C T CDH15 Silent p.S55S 0.39 TCGA-BH-A18G-01 16 89347283 89347283 T C ANKRD11 Silent p.K1889K 0.44 TCGA-BH-A18G-01 16 89348127 89348127 A G ANKRD11 Missense_Mutation p.M1608T 0.48 possibly_damaging(0.713) TCGA-BH-A18G-01 16 9857380 9857380 T - GRIN2A Frame_Shift_Del p.S1341Afs*56 0.29 TCGA-BH-A18G-01 17 10397961 10397961 A G MYH1 Silent p.S1832S 0.28 TCGA-BH-A18G-01 17 10442670 10442670 A G MYH2 Missense_Mutation p.V423A 0.38 deleterious(0.02) benign(0.393) TCGA-BH-A18G-01 17 10542777 10542777 A G MYH3 Silent p.T980T 0.34 TCGA-BH-A18G-01 17 10549319 10549319 T C MYH3 Missense_Mutation p.D310G 0.31 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 17 15162486 15162486 C T PMP22 Missense_Mutation p.A35T 0.37 tolerated(0.73) benign(0.002) TCGA-BH-A18G-01 17 15234553 15234553 G A TEKT3 Missense_Mutation p.S117L 0.03 deleterious(0) benign(0.15) TCGA-BH-A18G-01 17 15517264 15517264 A G RP11-385D13.1 Missense_Mutation p.Y562H 0.37 tolerated_low_confidence(0.52) benign(0.26) TCGA-BH-A18G-01 17 1579900 1579900 G A PRPF8 Nonsense_Mutation p.R763* 0.34 TCGA-BH-A18G-01 17 1636026 1636026 C G WDR81 Missense_Mutation p.Q1464E 0.58 tolerated(0.66) benign(0.039) TCGA-BH-A18G-01 17 17900865 17900865 A G LRRC48 Missense_Mutation p.S306G 0.34 tolerated(0.27) benign(0.012) TCGA-BH-A18G-01 17 18635399 18635399 T C TRIM16L Missense_Mutation p.Y139H 0.34 tolerated(0.74) benign(0.002) TCGA-BH-A18G-01 17 18923635 18923635 C T SLC5A10 Intron 0.34 TCGA-BH-A18G-01 17 19246897 19246897 C - B9D1 Intron 0.42 TCGA-BH-A18G-01 17 19641648 19641649 - G ALDH3A1 Frame_Shift_Ins p.S446Efs*51 0.36 TCGA-BH-A18G-01 17 2593958 2593958 G A CLUH Missense_Mutation p.A1287V 0.43 tolerated_low_confidence(0.29) benign(0) TCGA-BH-A18G-01 17 2607685 2607685 C T CLUH Missense_Mutation p.A54T 0.41 tolerated(0.19) benign(0.102) TCGA-BH-A18G-01 17 26708464 26708464 G C SARM1 Missense_Mutation p.G204A 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-BH-A18G-01 17 27018009 27018009 G A SUPT6H Silent p.A1187A 0.26 TCGA-BH-A18G-01 17 27066194 27066194 A G NEK8 Silent p.L464L 0.03 TCGA-BH-A18G-01 17 27228067 27228067 G A DHRS13 Missense_Mutation p.A208V 0.23 tolerated(0.14) benign(0.01) TCGA-BH-A18G-01 17 27414017 27414017 G A MYO18A Silent p.T1883T 0.14 TCGA-BH-A18G-01 17 27493811 27493811 G A MYO18A Missense_Mutation p.R50C 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A18G-01 17 27577217 27577217 G C CRYBA1 Missense_Mutation p.Q38H 0.16 deleterious(0) probably_damaging(0.964) TCGA-BH-A18G-01 17 29592336 29592336 T - NF1 Frame_Shift_Del p.Y1607Ifs*17 0.39 TCGA-BH-A18G-01 17 30498102 30498102 T C RHOT1 Silent p.S26S 0.13 TCGA-BH-A18G-01 17 33767699 33767699 G A SLFN13 Missense_Mutation p.P870L 0.60 deleterious(0.01) probably_damaging(1) TCGA-BH-A18G-01 17 37922286 37922286 C T IKZF3 Silent p.K429K 0.60 TCGA-BH-A18G-01 17 38911447 38911447 C T KRT25 Missense_Mutation p.G26E 0.50 deleterious(0) benign(0.134) TCGA-BH-A18G-01 17 39080751 39080751 G A KRT23 Missense_Mutation p.R383W 0.03 tolerated(0.18) benign(0.167) TCGA-BH-A18G-01 17 39580442 39580442 T C KRT37 Missense_Mutation p.N112D 0.62 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 17 40270000 40270000 T C KAT2A Missense_Mutation p.I406V 0.61 tolerated(0.68) benign(0.001) TCGA-BH-A18G-01 17 40666400 40666400 C T ATP6V0A1 Missense_Mutation p.A782V 0.62 tolerated(0.78) benign(0.007) TCGA-BH-A18G-01 17 4088270 4088270 G A ANKFY1 Silent p.G556G 0.48 TCGA-BH-A18G-01 17 41244131 41244131 A G BRCA1 Silent p.S1139S 0.03 TCGA-BH-A18G-01 17 42285118 42285118 C A UBTF Missense_Mutation p.K658N 0.54 deleterious(0.01) probably_damaging(0.951) TCGA-BH-A18G-01 17 42744742 42744742 C T C17orf104 Missense_Mutation p.P488L 0.60 tolerated(0.07) benign(0.002) TCGA-BH-A18G-01 17 43175768 43175768 G T NMT1 Missense_Mutation p.E244D 0.58 deleterious(0.02) possibly_damaging(0.786) TCGA-BH-A18G-01 17 4455213 4455213 C T MYBBP1A Missense_Mutation p.V329M 0.38 deleterious(0) possibly_damaging(0.532) TCGA-BH-A18G-01 17 45104975 45104975 C T RP11-156P1.3 Intron 0.31 TCGA-BH-A18G-01 17 45917585 45917585 C - SCRN2 Frame_Shift_Del p.E110Kfs*25 0.40 TCGA-BH-A18G-01 17 4858731 4858731 G A ENO3 Missense_Mutation p.A233T 0.40 deleterious_low_confidence(0.04) benign(0.044) TCGA-BH-A18G-01 17 4862826 4862826 C T SPAG7 3'UTR 0.28 TCGA-BH-A18G-01 17 4892806 4892806 C T INCA1 Silent p.Q104Q 0.34 TCGA-BH-A18G-01 17 5286554 5286554 T - RABEP1 3'UTR 0.31 TCGA-BH-A18G-01 17 55193605 55193605 C T AKAP1 Silent p.D805D 0.03 TCGA-BH-A18G-01 17 56276525 56276525 C T EPX Silent p.Y415Y 0.16 TCGA-BH-A18G-01 17 56284466 56284466 G A MKS1 Missense_Mutation p.R463W 0.13 deleterious(0.02) benign(0.004) TCGA-BH-A18G-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.20 TCGA-BH-A18G-01 17 56572389 56572389 C T MTMR4 Silent p.Q1038Q 0.17 TCGA-BH-A18G-01 17 57189485 57189485 T G SKA2 3'UTR 0.19 TCGA-BH-A18G-01 17 57322807 57322807 T C GDPD1 Missense_Mutation p.L73S 0.16 deleterious(0) probably_damaging(0.987) TCGA-BH-A18G-01 17 57351149 57351149 A G GDPD1 3'UTR 0.20 TCGA-BH-A18G-01 17 57760139 57760139 T C CLTC Silent p.T1250T 0.15 TCGA-BH-A18G-01 17 57958422 57958422 G A TUBD1 Missense_Mutation p.R124W 0.20 deleterious(0) probably_damaging(0.988) TCGA-BH-A18G-01 17 58040604 58040604 T C RNFT1 Missense_Mutation p.K33R 0.23 tolerated(0.29) benign(0.107) TCGA-BH-A18G-01 17 58258723 58258723 T C USP32 Missense_Mutation p.T1504A 0.16 tolerated_low_confidence(0.46) benign(0) TCGA-BH-A18G-01 17 58258980 58258980 T - USP32 Frame_Shift_Del p.N1418Ifs*28 0.26 TCGA-BH-A18G-01 17 58286768 58286768 T C USP32 Missense_Mutation p.D854G 0.18 deleterious(0) probably_damaging(0.984) TCGA-BH-A18G-01 17 59945278 59945278 T C INTS2 Missense_Mutation p.I1121V 0.22 tolerated(1) benign(0.003) TCGA-BH-A18G-01 17 59947271 59947271 T C INTS2 Missense_Mutation p.S961G 0.16 tolerated(0.35) benign(0) TCGA-BH-A18G-01 17 60768012 60768012 C T MRC2 Missense_Mutation p.A1301V 0.16 tolerated(0.25) benign(0.005) TCGA-BH-A18G-01 17 60782905 60782905 T - MARCH10 Frame_Shift_Del p.N789Mfs*52 0.19 TCGA-BH-A18G-01 17 61901579 61901579 T G FTSJ3 Missense_Mutation p.D340A 0.18 tolerated(0.09) benign(0.005) TCGA-BH-A18G-01 17 61908445 61908448 ATCT - PSMC5 Frame_Shift_Del p.I245Sfs*84 0.27 TCGA-BH-A18G-01 17 61957633 61957633 G T GH2 3'UTR 0.17 TCGA-BH-A18G-01 17 62019085 62019085 G A SCN4A Silent p.F1519F 0.16 TCGA-BH-A18G-01 17 62020328 62020328 C T SCN4A Silent p.V1382V 0.16 TCGA-BH-A18G-01 17 62796329 62796329 G A PLEKHM1P RNA 0.15 TCGA-BH-A18G-01 17 64641576 64641576 G - PRKCA Frame_Shift_Del p.R161Gfs*4 0.17 TCGA-BH-A18G-01 17 66040120 66040120 G A KPNA2 Missense_Mutation p.R366H 0.23 tolerated(0.17) benign(0.003) TCGA-BH-A18G-01 17 66265429 66265429 G A SLC16A6 Silent p.G460G 0.10 TCGA-BH-A18G-01 17 66982349 66982349 G A ABCA9 Silent p.A1388A 0.22 TCGA-BH-A18G-01 17 67047217 67047217 G A ABCA9 Silent p.C17C 0.18 TCGA-BH-A18G-01 17 67309421 67309421 A G ABCA5 Missense_Mutation p.L40P 0.13 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 17 68171419 68171419 G A KCNJ2 Missense_Mutation p.R80H 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A18G-01 17 71196087 71196087 C T COG1 Missense_Mutation p.P333S 0.16 deleterious(0) probably_damaging(0.971) TCGA-BH-A18G-01 17 71197684 71197684 A G COG1 Missense_Mutation p.Q573R 0.18 tolerated(0.32) benign(0.001) TCGA-BH-A18G-01 17 71205558 71205558 G A FAM104A 3'UTR 0.17 TCGA-BH-A18G-01 17 71397224 71397224 G A SDK2 Missense_Mutation p.A969V 0.21 tolerated(0.09) probably_damaging(0.973) TCGA-BH-A18G-01 17 72838798 72838798 A - GRIN2C Frame_Shift_Del p.C1160Afs*51 0.12 TCGA-BH-A18G-01 17 7290395 7290396 - G TNK1 Frame_Shift_Ins p.P449Afs*74 0.29 TCGA-BH-A18G-01 17 73100288 73100288 C T SLC16A5 Intron 0.11 TCGA-BH-A18G-01 17 73262964 73262964 G A MIF4GD Silent p.L217L 0.15 TCGA-BH-A18G-01 17 73774681 73774682 CT - H3F3B Frame_Shift_Del p.R135Sfs*12 0.16 TCGA-BH-A18G-01 17 73814802 73814802 C - UNK Frame_Shift_Del p.P486Lfs*12 0.25 TCGA-BH-A18G-01 17 74019442 74019442 G A EVPL Silent p.Y137Y 0.20 TCGA-BH-A18G-01 17 74396571 74396571 C T UBE2O Missense_Mutation p.D319N 0.16 tolerated(0.11) possibly_damaging(0.734) TCGA-BH-A18G-01 17 74623564 74623564 G A ST6GALNAC1 Silent p.N311N 0.14 TCGA-BH-A18G-01 17 74719905 74719905 A T JMJD6 Missense_Mutation p.F252I 0.19 tolerated(0.11) benign(0.026) TCGA-BH-A18G-01 17 74943951 74943951 C T MGAT5B Missense_Mutation p.H664Y 0.16 tolerated_low_confidence(0.37) benign(0.15) TCGA-BH-A18G-01 17 75190772 75190772 T C SEC14L1 Missense_Mutation p.I163T 0.20 deleterious(0) benign(0.318) TCGA-BH-A18G-01 17 76047478 76047478 C - TNRC6C Frame_Shift_Del p.P780Rfs*8 0.19 TCGA-BH-A18G-01 17 76128547 76128547 G T TMC8 Missense_Mutation p.V136F 0.19 deleterious(0.01) benign(0.1) TCGA-BH-A18G-01 17 76219871 76219871 C T AC087645.1 Silent p.K137K 0.29 TCGA-BH-A18G-01 17 76388701 76388701 C T PGS1 Silent p.H96H 0.17 TCGA-BH-A18G-01 17 76456047 76456047 G A DNAH17 Missense_Mutation p.P3144S 0.20 possibly_damaging(0.638) TCGA-BH-A18G-01 17 76492000 76492000 C T DNAH17 Missense_Mutation p.A1940T 0.17 possibly_damaging(0.708) TCGA-BH-A18G-01 17 76798528 76798528 C T USP36 Missense_Mutation p.R967Q 0.13 tolerated(1) benign(0.001) TCGA-BH-A18G-01 17 7681676 7681676 C T DNAH2 Silent p.T1810T 0.28 TCGA-BH-A18G-01 17 76972105 76972105 G A LGALS3BP Silent p.C62C 0.23 TCGA-BH-A18G-01 17 7697597 7697598 - C DNAH2 Frame_Shift_Ins p.G2535Wfs*44 0.20 TCGA-BH-A18G-01 17 7705284 7705284 A G DNAH2 Missense_Mutation p.H2974R 0.30 benign(0.021) TCGA-BH-A18G-01 17 77111652 77111652 G A RBFOX3 Missense_Mutation p.T49I 0.03 deleterious_low_confidence(0.05) benign(0.176) TCGA-BH-A18G-01 17 77708966 77708966 A G ENPP7 Missense_Mutation p.N175S 0.14 tolerated(0.05) possibly_damaging(0.773) TCGA-BH-A18G-01 17 77758863 77758863 G A CBX2 3'UTR 0.16 TCGA-BH-A18G-01 17 78081489 78081489 A T GAA Missense_Mutation p.I276F 0.09 tolerated(0.54) benign(0.003) TCGA-BH-A18G-01 17 78084571 78084571 G A GAA Missense_Mutation p.A495T 0.15 tolerated(1) benign(0.019) TCGA-BH-A18G-01 17 78188916 78188916 G A SGSH Silent p.L91L 0.12 TCGA-BH-A18G-01 17 78320424 78320424 T C RNF213 Silent p.I2763I 0.23 TCGA-BH-A18G-01 17 78321794 78321794 G A RNF213 Missense_Mutation p.G3220D 0.16 probably_damaging(1) TCGA-BH-A18G-01 17 78326956 78326956 C T RNF213 Intron 0.14 TCGA-BH-A18G-01 17 78332203 78332203 T C RNF213 Missense_Mutation p.W3660R 0.15 probably_damaging(0.999) TCGA-BH-A18G-01 17 7842981 7842981 C T CNTROB Nonsense_Mutation p.Q360* 0.38 TCGA-BH-A18G-01 17 78820339 78820339 C T RPTOR Nonsense_Mutation p.R427* 0.15 TCGA-BH-A18G-01 17 78914364 78914364 C T RPTOR Silent p.S996S 0.23 TCGA-BH-A18G-01 17 7915514 7915514 C T GUCY2D Missense_Mutation p.A601V 0.35 tolerated(0.06) possibly_damaging(0.826) TCGA-BH-A18G-01 17 79170839 79170839 G A AZI1 Missense_Mutation p.A555V 0.22 tolerated(0.26) benign(0.04) TCGA-BH-A18G-01 17 79211237 79211237 G A ENTHD2 Missense_Mutation p.T24M 0.18 deleterious(0) probably_damaging(0.986) TCGA-BH-A18G-01 17 79268848 79268848 G T SLC38A10 5'UTR 0.31 TCGA-BH-A18G-01 17 79409545 79409545 C T RP11-1055B8.7 Silent p.S390S 0.24 TCGA-BH-A18G-01 17 7942706 7942706 G T ALOX15B Missense_Mutation p.E50D 0.33 tolerated(0.36) possibly_damaging(0.881) TCGA-BH-A18G-01 17 79428464 79428464 C T RP11-1055B8.7 Missense_Mutation p.R2259W 0.18 probably_damaging(0.999) TCGA-BH-A18G-01 17 79663434 79663435 - G HGS Frame_Shift_Ins p.A483Gfs*146 0.11 TCGA-BH-A18G-01 17 79681982 79681982 G T SLC25A10 Splice_Site p.X32_splice 0.25 TCGA-BH-A18G-01 17 79768946 79768946 G A GCGR Missense_Mutation p.R111Q 0.18 tolerated(0.48) benign(0.007) TCGA-BH-A18G-01 17 79826687 79826687 G - ARHGDIA 3'UTR 0.31 TCGA-BH-A18G-01 17 7984601 7984601 G - AC129492.6 3'UTR 0.32 TCGA-BH-A18G-01 17 79914601 79914601 G A NOTUM Missense_Mutation p.R305C 0.17 deleterious(0.02) probably_damaging(0.93) TCGA-BH-A18G-01 17 79981611 79981611 C T LRRC45 Missense_Mutation p.P31L 0.19 tolerated(0.18) benign(0.007) TCGA-BH-A18G-01 17 80019598 80019598 C A DUS1L Splice_Site p.X198_splice 0.20 TCGA-BH-A18G-01 17 80043399 80043399 T C FASN Missense_Mutation p.T1361A 0.11 tolerated(0.13) benign(0.005) TCGA-BH-A18G-01 17 80195570 80195570 G A SLC16A3 Silent p.A308A 0.18 TCGA-BH-A18G-01 17 80332445 80332445 C T UTS2R Missense_Mutation p.A82V 0.18 tolerated(0.55) benign(0.041) TCGA-BH-A18G-01 17 8736214 8736214 C T PIK3R6 Missense_Mutation p.R265H 0.33 tolerated(0.2) benign(0.002) TCGA-BH-A18G-01 17 9604499 9604499 G C USP43 Missense_Mutation p.Q533H 0.52 deleterious(0.03) benign(0.287) TCGA-BH-A18G-01 18 12028956 12028956 A G IMPA2 Missense_Mutation p.I239V 0.29 tolerated(1) benign(0.023) TCGA-BH-A18G-01 18 19378079 19378079 A G MIB1 Missense_Mutation p.Y376C 0.04 deleterious(0) possibly_damaging(0.536) TCGA-BH-A18G-01 18 20572915 20572915 T A RBBP8 Silent p.T375T 0.42 TCGA-BH-A18G-01 18 23772436 23772436 T C PSMA8 3'UTR 0.05 TCGA-BH-A18G-01 18 33077733 33077733 C A INO80C Missense_Mutation p.G36C 0.35 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-BH-A18G-01 18 34752976 34752976 T C KIAA1328 Silent p.P485P 0.31 TCGA-BH-A18G-01 18 34854368 34854368 C T CELF4 Missense_Mutation p.R236H 0.59 deleterious(0) probably_damaging(0.963) TCGA-BH-A18G-01 18 42532404 42532404 T - SETBP1 Frame_Shift_Del p.L1035Yfs*26 0.31 TCGA-BH-A18G-01 18 43534549 43534550 CT - EPG5 Frame_Shift_Del p.E273Vfs*7 0.29 TCGA-BH-A18G-01 18 43571950 43571950 C T PSTPIP2 Splice_Site p.X280_splice 0.36 TCGA-BH-A18G-01 18 47383217 47383217 C T MYO5B Missense_Mutation p.G1330S 0.03 tolerated(0.81) possibly_damaging(0.748) TCGA-BH-A18G-01 18 48256159 48256159 G A MAPK4 Missense_Mutation p.A567T 0.35 tolerated_low_confidence(0.22) benign(0.004) TCGA-BH-A18G-01 18 54281731 54281731 A G TXNL1 Missense_Mutation p.L220P 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 18 55287867 55287867 A G NARS Silent p.S9S 0.37 TCGA-BH-A18G-01 18 55996356 55996356 C T NEDD4L Silent p.P270P 0.34 TCGA-BH-A18G-01 18 57006121 57006121 A G LMAN1 Silent p.R340R 0.40 TCGA-BH-A18G-01 18 65181126 65181126 T C DSEL Silent p.G250G 0.43 TCGA-BH-A18G-01 18 74639295 74639295 G - ZNF236 Frame_Shift_Del p.E1412Sfs*36 0.50 TCGA-BH-A18G-01 18 74701940 74701940 T C MBP Missense_Mutation p.N85S 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-BH-A18G-01 18 9256207 9256207 A - ANKRD12 Frame_Shift_Del p.K983Nfs*4 0.43 TCGA-BH-A18G-01 19 10165983 10165983 A G C3P1 RNA 0.72 TCGA-BH-A18G-01 19 10221410 10221410 G - PPAN Frame_Shift_Del p.G358Vfs*143 0.52 TCGA-BH-A18G-01 19 10260314 10260314 C T DNMT1 Missense_Mutation p.D801N 0.36 tolerated(0.17) benign(0.131) TCGA-BH-A18G-01 19 10597242 10597242 C T KEAP1 3'UTR 0.79 TCGA-BH-A18G-01 19 10668270 10668270 G T KRI1 Nonsense_Mutation p.Y531* 0.13 TCGA-BH-A18G-01 19 10668709 10668709 C T KRI1 Missense_Mutation p.G439E 0.09 deleterious(0.04) possibly_damaging(0.838) TCGA-BH-A18G-01 19 11118633 11118635 AGA - SMARCA4 In_Frame_Del p.K689del 0.68 TCGA-BH-A18G-01 19 1123591 1123591 C A SBNO2 Missense_Mutation p.E190D 0.38 tolerated(0.18) benign(0.014) TCGA-BH-A18G-01 19 11323971 11323971 G A DOCK6 Silent p.L1458L 0.73 TCGA-BH-A18G-01 19 1234690 1234690 C T C19orf26 Silent p.T169T 0.77 TCGA-BH-A18G-01 19 12767763 12767763 G A MAN2B1 Silent p.R509R 0.15 TCGA-BH-A18G-01 19 12768311 12768311 G A MAN2B1 Silent p.H456H 0.40 TCGA-BH-A18G-01 19 13397466 13397466 C G CACNA1A Missense_Mutation p.G1135A 0.31 probably_damaging(0.959) TCGA-BH-A18G-01 19 13876943 13876943 G T MRI1 Missense_Mutation p.G183C 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 19 13936462 13936462 G A ZSWIM4 Missense_Mutation p.A655T 0.55 deleterious(0) unknown(0) TCGA-BH-A18G-01 19 13985691 13985691 C - NANOS3 5'Flank 0.60 TCGA-BH-A18G-01 19 14077246 14077246 G T RFX1 Missense_Mutation p.P650T 0.11 tolerated(0.92) benign(0.004) TCGA-BH-A18G-01 19 14093025 14093025 G A RFX1 Missense_Mutation p.R177C 0.41 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-BH-A18G-01 19 1456366 1456366 A G APC2 Missense_Mutation p.H260R 0.31 possibly_damaging(0.885) TCGA-BH-A18G-01 19 14991326 14991326 G A OR7A17 Missense_Mutation p.A281V 0.76 tolerated_low_confidence(1) benign(0.001) TCGA-BH-A18G-01 19 15272336 15272337 - G NOTCH3 Frame_Shift_Ins p.G2035Rfs*60 0.62 TCGA-BH-A18G-01 19 15770201 15770201 G A CYP4F3 3'UTR 0.62 TCGA-BH-A18G-01 19 16918624 16918624 G A NWD1 Missense_Mutation p.V1322I 0.09 tolerated(0.22) benign(0.1) TCGA-BH-A18G-01 19 17305621 17305621 C T MYO9B Missense_Mutation p.P1129S 0.32 tolerated(0.45) benign(0.001) TCGA-BH-A18G-01 19 17309065 17309065 G A MYO9B Missense_Mutation p.A1396T 0.35 tolerated(0.71) benign(0.001) TCGA-BH-A18G-01 19 17444268 17444268 G A ANO8 Missense_Mutation p.R105C 0.39 deleterious(0) probably_damaging(0.937) TCGA-BH-A18G-01 19 18242827 18242827 G A MAST3 Missense_Mutation p.G485D 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 19 18375212 18375212 C A KIAA1683 Missense_Mutation p.W1046C 0.82 deleterious(0.03) benign(0.125) TCGA-BH-A18G-01 19 19308331 19308331 T C RFXANK Silent p.G113G 0.34 TCGA-BH-A18G-01 19 19360666 19360666 A G NCAN Silent p.K1304K 0.36 TCGA-BH-A18G-01 19 20728293 20728293 C T ZNF737 Missense_Mutation p.S239N 0.31 tolerated(1) benign(0.001) TCGA-BH-A18G-01 19 22363639 22363639 A T ZNF676 Missense_Mutation p.S294T 0.32 deleterious(0.04) benign(0.35) TCGA-BH-A18G-01 19 2917093 2917093 C T ZNF57 Silent p.H158H 0.79 TCGA-BH-A18G-01 19 30101471 30101471 A G POP4 Silent p.K72K 0.35 TCGA-BH-A18G-01 19 306594 306595 - G MIER2 3'UTR 0.20 TCGA-BH-A18G-01 19 3179654 3179654 C T S1PR4 Silent p.G288G 0.07 TCGA-BH-A18G-01 19 33695656 33695656 C A LRP3 Missense_Mutation p.P125T 0.40 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 19 34917062 34917062 T C PDCD2L 3'UTR 0.32 TCGA-BH-A18G-01 19 36106229 36106229 G A HAUS5 Silent p.T142T 0.33 TCGA-BH-A18G-01 19 36125260 36125260 C T RBM42 Silent p.L374L 0.22 TCGA-BH-A18G-01 19 36210803 36210803 G A KMT2B Missense_Mutation p.G185D 0.39 unknown(0) TCGA-BH-A18G-01 19 36291058 36291058 A G PRODH2 Missense_Mutation p.L498P 0.46 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 19 36353864 36353864 C T KIRREL2 Nonsense_Mutation p.R551* 0.37 TCGA-BH-A18G-01 19 36884529 36884529 C T ZFP82 Missense_Mutation p.G238D 0.39 tolerated(0.08) possibly_damaging(0.58) TCGA-BH-A18G-01 19 375704 375704 T C THEG Silent p.R89R 0.32 TCGA-BH-A18G-01 19 375710 375710 C T THEG Silent p.L87L 0.32 TCGA-BH-A18G-01 19 38190323 38190323 A G ZNF607 Missense_Mutation p.Y237H 0.32 tolerated(0.56) benign(0.001) TCGA-BH-A18G-01 19 38799635 38799635 C T YIF1B Silent p.P155P 0.39 TCGA-BH-A18G-01 19 38901820 38901820 G C RASGRP4 Missense_Mutation p.A596G 0.44 tolerated(0.09) benign(0) TCGA-BH-A18G-01 19 38976361 38976361 A G RYR1 Missense_Mutation p.D1689G 0.50 probably_damaging(0.987) TCGA-BH-A18G-01 19 39819261 39819261 T A GMFG Intron 0.06 TCGA-BH-A18G-01 19 40540903 40540903 G T ZNF780B Silent p.A621A 0.34 TCGA-BH-A18G-01 19 40581186 40581186 G A ZNF780A Missense_Mutation p.P389L 0.36 deleterious(0.01) benign(0.316) TCGA-BH-A18G-01 19 41084069 41084069 C T SHKBP1 Silent p.H90H 0.33 TCGA-BH-A18G-01 19 41807551 41807551 A - HNRNPUL1 Frame_Shift_Del p.K544Sfs*16 0.31 TCGA-BH-A18G-01 19 41925061 41925061 A G BCKDHA Missense_Mutation p.Y169C 0.33 deleterious(0) benign(0.339) TCGA-BH-A18G-01 19 42474445 42474445 G A ATP1A3 Silent p.L825L 0.35 TCGA-BH-A18G-01 19 42860340 42860340 T C MEGF8 Missense_Mutation p.S1433P 0.30 tolerated(0.12) probably_damaging(0.947) TCGA-BH-A18G-01 19 43414746 43414746 G A PSG6 Missense_Mutation p.T231I 0.37 tolerated(0.11) possibly_damaging(0.897) TCGA-BH-A18G-01 19 4361581 4361581 C T SH3GL1 3'UTR 0.54 TCGA-BH-A18G-01 19 44536586 44536586 G A ZNF222 Silent p.G293G 0.38 TCGA-BH-A18G-01 19 45150758 45150758 G A PVR Missense_Mutation p.V115I 0.35 tolerated(0.15) benign(0.252) TCGA-BH-A18G-01 19 45206745 45206745 C T CEACAM16 Missense_Mutation p.A55V 0.08 deleterious(0.03) probably_damaging(0.956) TCGA-BH-A18G-01 19 45381809 45381809 G A PVRL2 Intron 0.27 TCGA-BH-A18G-01 19 45822868 45822868 G A CKM Missense_Mutation p.T35I 0.37 deleterious(0) probably_damaging(0.912) TCGA-BH-A18G-01 19 45854672 45854672 T C ERCC2 3'UTR 0.37 TCGA-BH-A18G-01 19 46464289 46464289 T C NOVA2 Missense_Mutation p.K70E 0.30 deleterious(0) unknown(0) TCGA-BH-A18G-01 19 47200450 47200450 C T PRKD2 Silent p.T427T 0.44 TCGA-BH-A18G-01 19 47280530 47280530 G A SLC1A5 Silent p.A397A 0.25 TCGA-BH-A18G-01 19 47422332 47422332 T - ARHGAP35 Frame_Shift_Del p.C135Afs*36 0.31 TCGA-BH-A18G-01 19 47423374 47423374 A - ARHGAP35 Frame_Shift_Del p.K482Sfs*4 0.32 TCGA-BH-A18G-01 19 47706960 47706960 C T SAE1 Missense_Mutation p.A304V 0.40 deleterious(0) possibly_damaging(0.901) TCGA-BH-A18G-01 19 47844308 47844308 T C C5AR2 Silent p.C84C 0.30 TCGA-BH-A18G-01 19 48025197 48025197 T - ZNF541 Frame_Shift_Del p.M1228* 0.37 TCGA-BH-A18G-01 19 48668813 48668813 C T LIG1 Missense_Mutation p.S4N 0.39 deleterious_low_confidence(0.05) possibly_damaging(0.632) TCGA-BH-A18G-01 19 49351267 49351267 T C PLEKHA4 Missense_Mutation p.M486V 0.40 deleterious(0.03) possibly_damaging(0.491) TCGA-BH-A18G-01 19 49377486 49377486 C - PPP1R15A Frame_Shift_Del p.P334Hfs*6 0.38 TCGA-BH-A18G-01 19 49654782 49654782 G T HRC Silent p.S685S 0.34 TCGA-BH-A18G-01 19 49863224 49863224 C T TEAD2 Missense_Mutation p.G37R 0.42 tolerated(0.52) probably_damaging(0.991) TCGA-BH-A18G-01 19 49913062 49913062 A G CCDC155 Missense_Mutation p.Q400R 0.32 tolerated_low_confidence(0.19) benign(0.015) TCGA-BH-A18G-01 19 49926597 49926597 C T PTH2 5'UTR 0.37 TCGA-BH-A18G-01 19 50017386 50017386 A - FCGRT Frame_Shift_Del p.G109Vfs*27 0.30 TCGA-BH-A18G-01 19 50164025 50164025 A C IRF3 Missense_Mutation p.C353W 0.28 tolerated(0.05) benign(0.118) TCGA-BH-A18G-01 19 50412810 50412811 - C NUP62 Frame_Shift_Ins p.T86Nfs*38 0.33 TCGA-BH-A18G-01 19 50838397 50838397 C - NAPSB RNA 0.12 TCGA-BH-A18G-01 19 50906815 50906815 C T POLD1 Silent p.F401F 0.33 TCGA-BH-A18G-01 19 50938423 50938423 A - MYBPC2 Frame_Shift_Del p.K10Rfs*46 0.41 TCGA-BH-A18G-01 19 51128491 51128491 G A SYT3 Silent p.H545H 0.28 TCGA-BH-A18G-01 19 51298080 51298080 G A ACPT Missense_Mutation p.A342T 0.26 tolerated(0.62) benign(0) TCGA-BH-A18G-01 19 51537899 51537899 G - KLK12 Intron 0.32 TCGA-BH-A18G-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 19 53014880 53014880 C T ZNF578 Missense_Mutation p.R416C 0.03 tolerated(0.2) probably_damaging(0.911) TCGA-BH-A18G-01 19 53303462 53303462 T C ZNF28 Missense_Mutation p.T546A 0.36 deleterious(0) benign(0.14) TCGA-BH-A18G-01 19 53572768 53572768 G A ZNF160 Missense_Mutation p.P340L 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A18G-01 19 53996155 53996155 T A ZNF813 3'UTR 0.43 TCGA-BH-A18G-01 19 54403525 54403525 A G PRKCG Silent p.G440G 0.46 TCGA-BH-A18G-01 19 54445489 54445489 A G CACNG7 Missense_Mutation p.N257S 0.24 tolerated_low_confidence(0.7) benign(0.005) TCGA-BH-A18G-01 19 54627985 54627985 C T PRPF31 Missense_Mutation p.P269S 0.35 deleterious(0.05) probably_damaging(0.989) TCGA-BH-A18G-01 19 54656170 54656170 A G CNOT3 Missense_Mutation p.I571V 0.35 tolerated(0.67) benign(0.031) TCGA-BH-A18G-01 19 54658936 54658936 C T LENG1 3'UTR 0.25 TCGA-BH-A18G-01 19 54678002 54678002 C - MBOAT7 Frame_Shift_Del p.R386Gfs*2 0.46 TCGA-BH-A18G-01 19 54756385 54756385 G A LILRB5 Missense_Mutation p.A501V 0.35 tolerated(0.34) benign(0.009) TCGA-BH-A18G-01 19 55602751 55602751 G A PPP1R12C 3'UTR 0.30 TCGA-BH-A18G-01 19 55915776 55915776 T C UBE2S Silent p.P74P 0.06 TCGA-BH-A18G-01 19 56320345 56320345 G T NLRP11 Missense_Mutation p.P544H 0.38 deleterious(0) possibly_damaging(0.831) TCGA-BH-A18G-01 19 57036471 57036471 C A ZNF471 Silent p.P345P 0.46 TCGA-BH-A18G-01 19 57133284 57133284 G A ZNF71 Missense_Mutation p.G210D 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 19 5784247 5784247 C T CTB-54O9.9 3'UTR 0.80 TCGA-BH-A18G-01 19 58049574 58049574 A G ZNF549 Missense_Mutation p.K401R 0.31 tolerated(0.47) benign(0.062) TCGA-BH-A18G-01 19 58639419 58639419 C T ZNF329 Silent p.Q484Q 0.44 TCGA-BH-A18G-01 19 58639690 58639690 G T ZNF329 Missense_Mutation p.S394Y 0.35 deleterious(0) possibly_damaging(0.724) TCGA-BH-A18G-01 19 59082763 59082763 T C MZF1 5'UTR 0.12 TCGA-BH-A18G-01 19 613253 613253 C T HCN2 Silent p.I530I 0.37 TCGA-BH-A18G-01 19 629859 629859 C T POLRMT Missense_Mutation p.S168N 0.41 tolerated(0.41) benign(0.006) TCGA-BH-A18G-01 19 6415897 6415898 - C KHSRP Frame_Shift_Ins p.P537Afs*25 0.52 TCGA-BH-A18G-01 19 648216 648216 G - RNF126 Frame_Shift_Del p.P283Lfs*6 0.55 TCGA-BH-A18G-01 19 6733679 6733679 C T GPR108 Missense_Mutation p.V209M 0.05 tolerated(0.44) benign(0.063) TCGA-BH-A18G-01 19 7960502 7960502 C T LRRC8E Missense_Mutation p.A5V 0.38 tolerated(0.05) probably_damaging(0.992) TCGA-BH-A18G-01 19 8387756 8387756 G A KANK3 Silent p.C811C 0.70 TCGA-BH-A18G-01 19 8563815 8563815 G T PRAM1 Missense_Mutation p.L293I 0.35 deleterious(0.03) probably_damaging(0.919) TCGA-BH-A18G-01 19 9007831 9007831 C T MUC16 Silent p.R13131R 0.75 TCGA-BH-A18G-01 19 9074412 9074412 G A MUC16 Missense_Mutation p.A4345V 0.34 unknown(0) TCGA-BH-A18G-01 19 9076843 9076843 T C MUC16 Missense_Mutation p.T3535A 0.38 unknown(0) TCGA-BH-A18G-01 19 9297382 9297382 G A OR7D2 Missense_Mutation p.A309T 0.36 tolerated_low_confidence(0.36) benign(0.003) TCGA-BH-A18G-01 19 9964758 9964758 C T OLFM2 3'UTR 0.25 TCGA-BH-A18G-01 1 100626105 100626105 G A LRRC39 Nonsense_Mutation p.R46* 0.37 TCGA-BH-A18G-01 1 101198019 101198019 T C VCAM1 Missense_Mutation p.L524P 0.04 deleterious(0.02) benign(0.119) TCGA-BH-A18G-01 1 109524381 109524381 A G WDR47 Missense_Mutation p.V799A 0.04 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 1 110709700 110709700 C T SLC6A17 Missense_Mutation p.A50V 0.47 tolerated(0.32) benign(0) TCGA-BH-A18G-01 1 111492470 111492470 T A LRIF1 Intron 0.40 TCGA-BH-A18G-01 1 112026112 112026112 G A ADORA3 3'UTR 0.32 TCGA-BH-A18G-01 1 113253100 113253100 T G PPM1J Missense_Mutation p.E451A 0.40 tolerated(0.06) probably_damaging(0.984) TCGA-BH-A18G-01 1 116942043 116942043 T C ATP1A1 Missense_Mutation p.V817A 0.32 tolerated(0.06) possibly_damaging(0.532) TCGA-BH-A18G-01 1 117131452 117131452 G A IGSF3 Silent p.T788T 0.35 TCGA-BH-A18G-01 1 117142793 117142793 C T IGSF3 Missense_Mutation p.R620Q 0.42 deleterious(0.04) possibly_damaging(0.865) TCGA-BH-A18G-01 1 119441696 119441696 G A TBX15 Missense_Mutation p.R221C 0.36 deleterious(0) possibly_damaging(0.642) TCGA-BH-A18G-01 1 120839624 120839624 G A FAM72B 5'UTR 0.38 TCGA-BH-A18G-01 1 12439645 12439645 G A VPS13D Missense_Mutation p.V3729I 0.39 possibly_damaging(0.523) TCGA-BH-A18G-01 1 145441394 145441394 G A TXNIP 3'UTR 0.12 TCGA-BH-A18G-01 1 146643618 146643618 T C PRKAB2 Missense_Mutation p.M36V 0.12 tolerated(0.1) possibly_damaging(0.824) TCGA-BH-A18G-01 1 147095957 147095957 G - BCL9 Frame_Shift_Del p.Q1162Rfs*115 0.16 TCGA-BH-A18G-01 1 147096678 147096678 T C BCL9 Missense_Mutation p.M1400T 0.18 deleterious(0) benign(0.071) TCGA-BH-A18G-01 1 147231241 147231241 C T GJA5 Missense_Mutation p.V36M 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 1 149398862 149398862 C T HIST2H3PS2 3'Flank 0.16 TCGA-BH-A18G-01 1 149754258 149754258 G T FCGR1A 5'UTR 0.15 TCGA-BH-A18G-01 1 149761830 149761830 C T FCGR1A Silent p.C260C 0.14 TCGA-BH-A18G-01 1 149762831 149762831 T C FCGR1A Missense_Mutation p.F295L 0.14 tolerated(0.05) benign(0.022) TCGA-BH-A18G-01 1 149785238 149785238 C T HIST2H2BF 5'Flank 0.17 TCGA-BH-A18G-01 1 150779186 150779186 G T CTSK Silent p.T32T 0.17 TCGA-BH-A18G-01 1 151260658 151260658 C T ZNF687 Missense_Mutation p.P631S 0.18 tolerated(0.24) benign(0.004) TCGA-BH-A18G-01 1 151280086 151280086 G T PI4KB Silent p.P394P 0.20 TCGA-BH-A18G-01 1 151491178 151491178 T C CGN Silent p.A61A 0.16 TCGA-BH-A18G-01 1 151493130 151493130 T C CGN Missense_Mutation p.V368A 0.17 deleterious(0) benign(0.423) TCGA-BH-A18G-01 1 151495913 151495913 C T CGN Missense_Mutation p.R382W 0.20 deleterious(0) probably_damaging(0.974) TCGA-BH-A18G-01 1 151779787 151779787 G A RORC 3'UTR 0.36 TCGA-BH-A18G-01 1 152284791 152284791 G A FLG Silent p.H857H 0.16 TCGA-BH-A18G-01 1 152800123 152800123 G A LCE1A Missense_Mutation p.G59S 0.15 tolerated_low_confidence(0.61) unknown(0) TCGA-BH-A18G-01 1 152957715 152957715 T A SPRR1A Silent p.S3S 0.19 TCGA-BH-A18G-01 1 153588378 153588378 T C S100A14 5'UTR 0.16 TCGA-BH-A18G-01 1 153634875 153634875 C A ILF2 Missense_Mutation p.E390D 0.18 tolerated_low_confidence(0.06) unknown(0) TCGA-BH-A18G-01 1 153784600 153784600 T C GATAD2B Silent p.E476E 0.20 TCGA-BH-A18G-01 1 153935178 153935178 C - SLC39A1 Frame_Shift_Del p.G5Efs*13 0.16 TCGA-BH-A18G-01 1 153945733 153945733 A G CREB3L4 Missense_Mutation p.H269R 0.17 tolerated(0.11) benign(0.068) TCGA-BH-A18G-01 1 154178083 154178083 G A C1orf189 Missense_Mutation p.T22M 0.11 tolerated(1) benign(0.002) TCGA-BH-A18G-01 1 154245925 154245926 - C HAX1 Frame_Shift_Ins p.E59* 0.23 TCGA-BH-A18G-01 1 154248120 154248120 G A HAX1 Silent p.L261L 0.17 TCGA-BH-A18G-01 1 154320943 154320943 G A ATP8B2 Missense_Mutation p.V1108I 0.16 tolerated(0.3) benign(0.053) TCGA-BH-A18G-01 1 154401730 154401730 G - IL6R Frame_Shift_Del p.V50* 0.25 TCGA-BH-A18G-01 1 154931988 154931988 G A PYGO2 Missense_Mutation p.P163L 0.16 tolerated(0.09) benign(0.008) TCGA-BH-A18G-01 1 154961214 154961214 G T FLAD1 Nonsense_Mutation p.E336* 0.26 TCGA-BH-A18G-01 1 154966118 154966118 T C LENEP Missense_Mutation p.L12P 0.16 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-BH-A18G-01 1 155005170 155005170 A G DCST2 Missense_Mutation p.S172P 0.04 deleterious(0) possibly_damaging(0.828) TCGA-BH-A18G-01 1 155035024 155035024 A G ADAM15 3'UTR 0.30 TCGA-BH-A18G-01 1 155156289 155156289 G T TRIM46 Missense_Mutation p.G635W 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 155290920 155290920 A T RUSC1 Intron 0.16 TCGA-BH-A18G-01 1 155294982 155294982 G - RUSC1 Intron 0.19 TCGA-BH-A18G-01 1 155296415 155296415 G A RUSC1 Missense_Mutation p.A636T 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-BH-A18G-01 1 155450676 155450676 A G ASH1L Missense_Mutation p.I662T 0.18 tolerated_low_confidence(0.1) benign(0.173) TCGA-BH-A18G-01 1 155701169 155701169 T G DAP3 Missense_Mutation p.L289R 0.17 deleterious(0) probably_damaging(0.988) TCGA-BH-A18G-01 1 155724207 155724207 T G GON4L Missense_Mutation p.K1864Q 0.13 tolerated(0.09) possibly_damaging(0.607) TCGA-BH-A18G-01 1 155735933 155735933 G A GON4L Nonsense_Mutation p.R1111* 0.19 TCGA-BH-A18G-01 1 155744917 155744917 C T GON4L Silent p.Q742Q 0.16 TCGA-BH-A18G-01 1 155891696 155891696 T C KIAA0907 Missense_Mutation p.Y323C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 1 156206259 156206259 G A PMF1 Missense_Mutation p.S163N 0.10 deleterious_low_confidence(0.01) benign(0) TCGA-BH-A18G-01 1 156618499 156618499 A G BCAN Silent p.P303P 0.19 TCGA-BH-A18G-01 1 156626738 156626738 T G BCAN Missense_Mutation p.F687V 0.72 tolerated(0.65) benign(0.05) TCGA-BH-A18G-01 1 156786539 156786539 G A SH2D2A 5'UTR 0.14 TCGA-BH-A18G-01 1 156875113 156875113 C T PEAR1 Intron 0.18 TCGA-BH-A18G-01 1 157490960 157490961 - A FCRL5 Frame_Shift_Ins p.H788Sfs*2 0.15 TCGA-BH-A18G-01 1 157666794 157666794 A G FCRL3 Intron 0.11 TCGA-BH-A18G-01 1 157737074 157737074 G A FCRL2 Missense_Mutation p.A370V 0.18 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 1 157738283 157738283 A G FCRL2 Silent p.S268S 0.13 TCGA-BH-A18G-01 1 158548962 158548962 C A OR10X1 Missense_Mutation p.R243M 0.19 deleterious(0) possibly_damaging(0.897) TCGA-BH-A18G-01 1 158644189 158644189 T C SPTA1 Missense_Mutation p.Q427R 0.19 tolerated(0.39) possibly_damaging(0.672) TCGA-BH-A18G-01 1 158670002 158670002 G T OR6K2 Nonsense_Mutation p.C147* 0.18 TCGA-BH-A18G-01 1 158687481 158687481 G A OR6K3 Missense_Mutation p.A142V 0.18 tolerated(0.61) benign(0.007) TCGA-BH-A18G-01 1 158985711 158985711 T C IFI16 Silent p.T105T 0.17 TCGA-BH-A18G-01 1 159002342 159002342 A G IFI16 Missense_Mutation p.N397S 0.14 tolerated(0.52) possibly_damaging(0.828) TCGA-BH-A18G-01 1 159904599 159904599 G A IGSF9 Silent p.I229I 0.18 TCGA-BH-A18G-01 1 160093075 160093075 A G ATP1A2 Missense_Mutation p.T84A 0.18 deleterious(0.01) possibly_damaging(0.672) TCGA-BH-A18G-01 1 160458909 160458909 G T SLAMF6 Missense_Mutation p.T283N 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 160920969 160920969 A G ITLN2 Missense_Mutation p.M102T 0.16 deleterious(0) possibly_damaging(0.593) TCGA-BH-A18G-01 1 161182212 161182212 C A NDUFS2 Missense_Mutation p.P353H 0.17 deleterious(0.01) possibly_damaging(0.852) TCGA-BH-A18G-01 1 161183875 161183875 T - NDUFS2 Intron 0.14 TCGA-BH-A18G-01 1 161198542 161198542 T C TOMM40L Missense_Mutation p.L241P 0.16 deleterious(0.03) probably_damaging(0.936) TCGA-BH-A18G-01 1 161199736 161199736 G A TOMM40L 3'UTR 0.20 TCGA-BH-A18G-01 1 161496286 161496286 A G HSPA6 Missense_Mutation p.Y613C 0.13 deleterious_low_confidence(0.01) benign(0.065) TCGA-BH-A18G-01 1 161967735 161967735 C T OLFML2B Missense_Mutation p.V452M 0.15 tolerated(0.33) benign(0.008) TCGA-BH-A18G-01 1 16330798 16330798 C T C1orf64 5'UTR 0.16 TCGA-BH-A18G-01 1 16349186 16349186 C A CLCNKA Silent p.P24P 0.39 TCGA-BH-A18G-01 1 166838699 166838699 A C TADA1 Missense_Mutation p.I72S 0.17 tolerated(0.88) benign(0.027) TCGA-BH-A18G-01 1 167960473 167960473 C T DCAF6 Missense_Mutation p.T195M 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-BH-A18G-01 1 16804820 16804820 A G CROCCP3 RNA 0.19 TCGA-BH-A18G-01 1 168066024 168066024 A G GPR161 Missense_Mutation p.V294A 0.12 deleterious(0) probably_damaging(0.917) TCGA-BH-A18G-01 1 168550325 168550325 A G XCL1 Missense_Mutation p.D71G 0.16 deleterious(0.02) probably_damaging(0.952) TCGA-BH-A18G-01 1 169845143 169845146 ACAA - SCYL3 Frame_Shift_Del p.C147Kfs*10 0.19 TCGA-BH-A18G-01 1 169947224 169947224 A G KIFAP3 Splice_Site p.X633_splice 0.16 TCGA-BH-A18G-01 1 169952463 169952463 T C KIFAP3 Missense_Mutation p.K485R 0.03 deleterious(0) possibly_damaging(0.889) TCGA-BH-A18G-01 1 170705372 170705372 T C PRRX1 3'UTR 0.23 TCGA-BH-A18G-01 1 170940891 170940891 A G MROH9 Missense_Mutation p.I161M 0.18 tolerated(0.29) benign(0.319) TCGA-BH-A18G-01 1 171173075 171173075 A G FMO2 Silent p.S233S 0.13 TCGA-BH-A18G-01 1 171292176 171292176 A G FMO4 Missense_Mutation p.K56E 0.15 tolerated(0.06) benign(0.257) TCGA-BH-A18G-01 1 173155735 173155735 T C TNFSF4 Missense_Mutation p.T158A 0.19 tolerated(0.19) benign(0.001) TCGA-BH-A18G-01 1 173808666 173808666 C T DARS2 Silent p.D334D 0.16 TCGA-BH-A18G-01 1 17395442 17395442 C T PADI2 3'UTR 0.37 TCGA-BH-A18G-01 1 176659424 176659424 A G PAPPA2 Silent p.P763P 0.16 TCGA-BH-A18G-01 1 177199241 177199241 C T BRINP2 Missense_Mutation p.R77W 0.16 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 1 177226479 177226479 C T BRINP2 Nonsense_Mutation p.R210* 0.15 TCGA-BH-A18G-01 1 17739610 17739610 C T RCC2 Silent p.V424V 0.43 TCGA-BH-A18G-01 1 178252826 178252826 G T RASAL2 Missense_Mutation p.E110D 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-BH-A18G-01 1 17953903 17953903 G A ARHGEF10L Missense_Mutation p.A497T 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 179561737 179561737 T C TDRD5 Intron 0.13 TCGA-BH-A18G-01 1 179815881 179815881 C T TOR1AIP2 Silent p.V246V 0.13 TCGA-BH-A18G-01 1 180153145 180153145 G A QSOX1 Missense_Mutation p.A283T 0.15 tolerated(0.41) benign(0.006) TCGA-BH-A18G-01 1 181018296 181018296 A G MR1 Missense_Mutation p.D59G 0.13 deleterious(0) possibly_damaging(0.796) TCGA-BH-A18G-01 1 181705572 181705572 T C CACNA1E Splice_Site p.X1141_splice 0.19 TCGA-BH-A18G-01 1 181735731 181735731 C T CACNA1E Missense_Mutation p.A1622V 0.03 deleterious(0) possibly_damaging(0.787) TCGA-BH-A18G-01 1 182026403 182026403 C T ZNF648 Missense_Mutation p.R248H 0.22 tolerated(0.18) benign(0.001) TCGA-BH-A18G-01 1 182791267 182791268 - A NPL Frame_Shift_Ins p.T227Dfs*9 0.17 TCGA-BH-A18G-01 1 182841496 182841496 C T DHX9 Missense_Mutation p.R528C 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 186083127 186083127 G - HMCN1 Frame_Shift_Del p.G3718Afs*6 0.18 TCGA-BH-A18G-01 1 186114602 186114602 G A HMCN1 Missense_Mutation p.M4778I 0.18 possibly_damaging(0.785) TCGA-BH-A18G-01 1 186325481 186325481 G A TPR Missense_Mutation p.R609C 0.04 possibly_damaging(0.689) TCGA-BH-A18G-01 1 18960957 18960957 C T PAX7 Silent p.C82C 0.41 TCGA-BH-A18G-01 1 19440188 19440188 T C UBR4 Intron 0.05 TCGA-BH-A18G-01 1 19683162 19683162 G A CAPZB Silent p.G185G 0.41 TCGA-BH-A18G-01 1 196971637 196971637 G A CFHR5 Silent p.P391P 0.20 TCGA-BH-A18G-01 1 197060006 197060006 A T ASPM Missense_Mutation p.F3204I 0.17 tolerated(0.38) benign(0.005) TCGA-BH-A18G-01 1 197168890 197168890 T - ZBTB41 Frame_Shift_Del p.K238Nfs*4 0.18 TCGA-BH-A18G-01 1 197411069 197411069 C T CRB1 Intron 0.19 TCGA-BH-A18G-01 1 197411509 197411509 C T CRB1 Intron 0.04 TCGA-BH-A18G-01 1 200014658 200014658 C T NR5A2 Missense_Mutation p.R137C 0.13 deleterious(0) possibly_damaging(0.669) TCGA-BH-A18G-01 1 200143178 200143178 A G NR5A2 Missense_Mutation p.Y489C 0.16 tolerated(0.06) probably_damaging(0.931) TCGA-BH-A18G-01 1 200880905 200880905 G A C1orf106 Silent p.P428P 0.21 TCGA-BH-A18G-01 1 201012645 201012645 C T CACNA1S Silent p.L1604L 0.23 TCGA-BH-A18G-01 1 201750162 201750162 G A NAV1 Missense_Mutation p.R463H 0.20 tolerated(0.47) possibly_damaging(0.795) TCGA-BH-A18G-01 1 202698141 202698141 G - KDM5B 3'UTR 0.26 TCGA-BH-A18G-01 1 202699095 202699095 G A KDM5B Missense_Mutation p.R1413C 0.19 deleterious(0) possibly_damaging(0.77) TCGA-BH-A18G-01 1 202935903 202935903 A T CYB5R1 Missense_Mutation p.Y47N 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 1 203188901 203188901 C T CHIT1 Missense_Mutation p.R269H 0.18 tolerated(0.34) possibly_damaging(0.774) TCGA-BH-A18G-01 1 204091056 204091056 C - SOX13 Frame_Shift_Del p.P270Lfs*5 0.43 TCGA-BH-A18G-01 1 204101170 204101170 G A ETNK2 3'UTR 0.23 TCGA-BH-A18G-01 1 204210854 204210854 C A PLEKHA6 Missense_Mutation p.R754M 0.19 deleterious(0.03) possibly_damaging(0.805) TCGA-BH-A18G-01 1 204230482 204230482 A G PLEKHA6 Missense_Mutation p.V159A 0.04 deleterious(0) possibly_damaging(0.79) TCGA-BH-A18G-01 1 204957854 204957854 A G NFASC Missense_Mutation p.Y896C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 1 204966377 204966377 C A NFASC Silent p.T954T 0.18 TCGA-BH-A18G-01 1 205028245 205028245 C T CNTN2 Missense_Mutation p.P174L 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 205033454 205033454 C T CNTN2 Silent p.L415L 0.19 TCGA-BH-A18G-01 1 205389680 205389680 G A LEMD1 5'UTR 0.16 TCGA-BH-A18G-01 1 206317585 206317585 G A CTSE Silent p.T3T 0.15 TCGA-BH-A18G-01 1 206647810 206647810 A G IKBKE Missense_Mutation p.E75G 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 206649650 206649650 G A IKBKE Missense_Mutation p.R162Q 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 209785393 209785393 G A CAMK1G Missense_Mutation p.C391Y 0.17 tolerated_low_confidence(1) benign(0.081) TCGA-BH-A18G-01 1 20992772 20992772 G A KIF17 Missense_Mutation p.A949V 0.30 deleterious(0) probably_damaging(0.981) TCGA-BH-A18G-01 1 20998608 20998608 G A KIF17 Missense_Mutation p.R849W 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 210012459 210012459 A T DIEXF Missense_Mutation p.D423V 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 211546013 211546013 C T TRAF5 Missense_Mutation p.A548V 0.04 tolerated(1) benign(0.02) TCGA-BH-A18G-01 1 212548597 212548597 T - TMEM206 Frame_Shift_Del p.S338Vfs*22 0.17 TCGA-BH-A18G-01 1 217784358 217784358 A G GPATCH2 Silent p.G297G 0.15 TCGA-BH-A18G-01 1 220284183 220284183 T C IARS2 Silent p.H461H 0.16 TCGA-BH-A18G-01 1 222743947 222743947 G A TAF1A Missense_Mutation p.T222I 0.18 deleterious(0) possibly_damaging(0.597) TCGA-BH-A18G-01 1 222833273 222833273 G A MIA3 Missense_Mutation p.A1634T 0.18 tolerated(0.05) probably_damaging(0.998) TCGA-BH-A18G-01 1 22303551 22303551 A G CELA3B Missense_Mutation p.S7G 0.36 tolerated(0.13) benign(0.054) TCGA-BH-A18G-01 1 223177181 223177181 C T DISP1 Silent p.S814S 0.14 TCGA-BH-A18G-01 1 224380050 224380050 C T DEGS1 Missense_Mutation p.A281V 0.20 deleterious(0) possibly_damaging(0.456) TCGA-BH-A18G-01 1 224517828 224517828 A G NVL Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BH-A18G-01 1 225533752 225533752 A - DNAH14 Frame_Shift_Del p.A2696Lfs*25 0.16 TCGA-BH-A18G-01 1 225590975 225590975 G T LBR 3'UTR 0.18 TCGA-BH-A18G-01 1 226573298 226573298 G A PARP1 Silent p.S306S 0.18 TCGA-BH-A18G-01 1 227216436 227216436 T C CDC42BPA Missense_Mutation p.I1417V 0.14 tolerated(0.26) benign(0.001) TCGA-BH-A18G-01 1 227219043 227219043 C T CDC42BPA Missense_Mutation p.S1209N 0.16 tolerated(0.35) benign(0.079) TCGA-BH-A18G-01 1 228295542 228295542 T C MRPL55 Missense_Mutation p.T55A 0.11 tolerated(0.57) benign(0.003) TCGA-BH-A18G-01 1 228475592 228475592 C T OBSCN Missense_Mutation p.P3677S 0.17 probably_damaging(0.994) TCGA-BH-A18G-01 1 228598716 228598716 A T TRIM17 Silent p.G229G 0.17 TCGA-BH-A18G-01 1 229433339 229433339 G A RAB4A Missense_Mutation p.R134H 0.16 deleterious(0) probably_damaging(0.966) TCGA-BH-A18G-01 1 229622121 229622121 A G NUP133 Silent p.S499S 0.02 TCGA-BH-A18G-01 1 229738112 229738112 C A TAF5L Nonsense_Mutation p.E268* 0.18 TCGA-BH-A18G-01 1 229750174 229750174 C T TAF5L Missense_Mutation p.R19H 0.17 deleterious(0.01) benign(0.179) TCGA-BH-A18G-01 1 2303937 2303937 T C MORN1 Missense_Mutation p.H243R 0.30 deleterious(0.05) benign(0.017) TCGA-BH-A18G-01 1 230800228 230800228 A G COG2 Splice_Site p.X128_splice 0.17 TCGA-BH-A18G-01 1 231339666 231339666 G A TRIM67 Missense_Mutation p.V530I 0.15 tolerated(0.07) benign(0.427) TCGA-BH-A18G-01 1 231344914 231344914 C T TRIM67 Silent p.L681L 0.19 TCGA-BH-A18G-01 1 231411232 231411234 AGA - GNPAT In_Frame_Del p.K645del 0.10 TCGA-BH-A18G-01 1 231489133 231489133 A G SPRTN 3'UTR 0.14 TCGA-BH-A18G-01 1 231829666 231829666 C T DISC1 Silent p.I54I 0.18 TCGA-BH-A18G-01 1 232601164 232601164 T C SIPA1L2 Splice_Site p.X748_splice 0.15 TCGA-BH-A18G-01 1 234556530 234556530 C T TARBP1 Missense_Mutation p.R1158H 0.16 tolerated(0.07) benign(0.059) TCGA-BH-A18G-01 1 235331822 235331822 C A ARID4B 3'UTR 0.03 TCGA-BH-A18G-01 1 235600767 235600767 T C TBCE Missense_Mutation p.L365P 0.16 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 1 235856727 235856727 C T LYST Missense_Mutation p.A3542T 0.15 tolerated(0.16) benign(0.219) TCGA-BH-A18G-01 1 235926116 235926116 T C LYST Missense_Mutation p.M2053V 0.16 tolerated_low_confidence(0.24) benign(0.001) TCGA-BH-A18G-01 1 235972931 235972931 T C LYST Missense_Mutation p.H396R 0.16 tolerated(0.07) benign(0.166) TCGA-BH-A18G-01 1 236148736 236148736 G A NID1 Missense_Mutation p.P1000S 0.15 deleterious(0.02) possibly_damaging(0.851) TCGA-BH-A18G-01 1 236157147 236157147 G A NID1 Silent p.H851H 0.15 TCGA-BH-A18G-01 1 236738190 236738190 T C HEATR1 Missense_Mutation p.Q1033R 0.15 tolerated(0.62) benign(0.001) TCGA-BH-A18G-01 1 236748353 236748353 T C HEATR1 Missense_Mutation p.K738R 0.04 tolerated(0.36) benign(0.002) TCGA-BH-A18G-01 1 236751266 236751266 C T HEATR1 Silent p.S536S 0.17 TCGA-BH-A18G-01 1 236761182 236761182 A G HEATR1 Missense_Mutation p.V200A 0.14 deleterious(0.01) benign(0.03) TCGA-BH-A18G-01 1 237167557 237167558 - G MT1HL1 Frame_Shift_Ins p.L39Pfs*37 0.21 TCGA-BH-A18G-01 1 240071128 240071128 C T CHRM3 Missense_Mutation p.T126M 0.16 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 1 243507632 243507632 A G SDCCAG8 Missense_Mutation p.Q491R 0.17 deleterious(0.01) benign(0.391) TCGA-BH-A18G-01 1 245019248 245019248 G A HNRNPU Missense_Mutation p.R709C 0.18 deleterious(0.01) unknown(0) TCGA-BH-A18G-01 1 245318602 245318602 T C KIF26B 5'UTR 0.12 TCGA-BH-A18G-01 1 245530587 245530587 C T KIF26B Missense_Mutation p.S306L 0.21 deleterious(0) unknown(0) TCGA-BH-A18G-01 1 245865922 245865922 T C KIF26B 3'UTR 0.21 TCGA-BH-A18G-01 1 24657985 24657985 T C GRHL3 Silent p.D29D 0.38 TCGA-BH-A18G-01 1 247200747 247200747 T - ZNF670 3'UTR 0.19 TCGA-BH-A18G-01 1 247264139 247264139 C T ZNF669 Missense_Mutation p.C311Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 1 248263281 248263281 A G OR2L13 Missense_Mutation p.T202A 0.17 tolerated(0.3) benign(0.042) TCGA-BH-A18G-01 1 248569431 248569431 G A OR2T1 Missense_Mutation p.G46S 0.16 tolerated_low_confidence(1) benign(0) TCGA-BH-A18G-01 1 25228982 25228982 G A RUNX3 Silent p.S307S 0.45 TCGA-BH-A18G-01 1 25775353 25775353 C A TMEM57 Missense_Mutation p.L93M 0.40 deleterious(0.02) possibly_damaging(0.908) TCGA-BH-A18G-01 1 26795646 26795646 T A DHDDS 3'UTR 0.38 TCGA-BH-A18G-01 1 27622855 27622855 C T WDTC1 Silent p.Y304Y 0.40 TCGA-BH-A18G-01 1 27632974 27632974 T - WDTC1 3'UTR 0.35 TCGA-BH-A18G-01 1 27685239 27685239 G - MAP3K6 Frame_Shift_Del p.F849Sfs*143 0.43 TCGA-BH-A18G-01 1 28893900 28893900 C T TRNAU1AP Missense_Mutation p.R169W 0.39 deleterious(0) probably_damaging(0.991) TCGA-BH-A18G-01 1 29189472 29189472 G A OPRD1 Missense_Mutation p.V266I 0.43 deleterious(0.02) possibly_damaging(0.845) TCGA-BH-A18G-01 1 29609285 29609285 G A PTPRU Missense_Mutation p.A656T 0.40 deleterious(0.01) benign(0.081) TCGA-BH-A18G-01 1 31350004 31350004 G A SDC3 Nonsense_Mutation p.Q89* 0.46 TCGA-BH-A18G-01 1 32681981 32681981 G A TMEM234 3'UTR 0.31 TCGA-BH-A18G-01 1 32849565 32849565 T C BSDC1 Missense_Mutation p.K92E 0.36 deleterious(0) possibly_damaging(0.691) TCGA-BH-A18G-01 1 35906469 35906469 G A KIAA0319L Intron 0.27 TCGA-BH-A18G-01 1 38409556 38409556 G T INPP5B Silent p.L54L 0.41 TCGA-BH-A18G-01 1 40205846 40205846 C T PPIE Missense_Mutation p.A14V 0.37 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 1 43309027 43309027 G A ERMAP 3'UTR 0.45 TCGA-BH-A18G-01 1 45169767 45169767 A G C1orf228 Missense_Mutation p.I216V 0.28 tolerated(1) benign(0.006) TCGA-BH-A18G-01 1 45243287 45243287 T G RPS8 Missense_Mutation p.C71W 0.39 tolerated(0.1) possibly_damaging(0.563) TCGA-BH-A18G-01 1 45296706 45296706 C T PTCH2 Silent p.P209P 0.53 TCGA-BH-A18G-01 1 46744490 46744491 - A LRRC41 3'UTR 0.26 TCGA-BH-A18G-01 1 47406941 47406941 G T CYP4A11 Silent p.P55P 0.47 TCGA-BH-A18G-01 1 4771980 4771980 C T AJAP1 Missense_Mutation p.P17L 0.27 deleterious(0) probably_damaging(0.937) TCGA-BH-A18G-01 1 52851575 52851575 C T ORC1 Missense_Mutation p.R477Q 0.46 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 1 53608111 53608111 T C SLC1A7 Missense_Mutation p.H4R 0.30 tolerated_low_confidence(0.54) benign(0) TCGA-BH-A18G-01 1 54507477 54507477 G T TMEM59 Missense_Mutation p.S182Y 0.36 deleterious(0) probably_damaging(0.941) TCGA-BH-A18G-01 1 55337163 55337163 G A DHCR24 Missense_Mutation p.R246W 0.50 tolerated(0.17) possibly_damaging(0.586) TCGA-BH-A18G-01 1 55464925 55464925 T C BSND Silent p.G22G 0.05 TCGA-BH-A18G-01 1 56197632 56197632 T C RP11-466L17.1 RNA 0.39 TCGA-BH-A18G-01 1 57161673 57161673 G A PRKAA2 Missense_Mutation p.G210D 0.04 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 1 59156023 59156023 T - MYSM1 Frame_Shift_Del p.K95Nfs*3 0.26 TCGA-BH-A18G-01 1 6269366 6269366 A G RNF207 Missense_Mutation p.Y197C 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A18G-01 1 6310563 6310563 C A GPR153 Missense_Mutation p.E367D 0.51 deleterious(0.04) benign(0.015) TCGA-BH-A18G-01 1 63788827 63788827 A G FOXD3 Missense_Mutation p.D33G 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-BH-A18G-01 1 6399573 6399573 T C ACOT7 Missense_Mutation p.H123R 0.33 deleterious(0.01) possibly_damaging(0.701) TCGA-BH-A18G-01 1 65143941 65143942 - G CACHD1 Frame_Shift_Ins p.I1016Dfs*10 0.29 TCGA-BH-A18G-01 1 68624864 68624864 G A WLS Missense_Mutation p.T147I 0.35 tolerated(0.07) benign(0.022) TCGA-BH-A18G-01 1 71437364 71437364 A G PTGER3 Intron 0.38 TCGA-BH-A18G-01 1 75672176 75672176 C T SLC44A5 3'UTR 0.39 TCGA-BH-A18G-01 1 76779584 76779584 A G ST6GALNAC3 Missense_Mutation p.N38S 0.40 benign(0.003) TCGA-BH-A18G-01 1 79116277 79116277 C A IFI44 Missense_Mutation p.L133I 0.38 tolerated(0.09) possibly_damaging(0.708) TCGA-BH-A18G-01 1 8416175 8416175 G A RERE Missense_Mutation p.R1491C 0.41 unknown(0) TCGA-BH-A18G-01 1 85403543 85403543 C T MCOLN2 Missense_Mutation p.M410I 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A18G-01 1 85405343 85405343 A G MCOLN2 Missense_Mutation p.C335R 0.36 tolerated(0.11) possibly_damaging(0.526) TCGA-BH-A18G-01 1 8617556 8617556 G A RERE Silent p.N183N 0.04 TCGA-BH-A18G-01 1 86590679 86590679 A G COL24A1 Missense_Mutation p.L447P 0.34 tolerated(0.41) benign(0.001) TCGA-BH-A18G-01 1 89478867 89478867 C T GBP3 Splice_Site p.X290_splice 0.31 TCGA-BH-A18G-01 1 897821 897821 C T KLHL17 Silent p.D266D 0.31 TCGA-BH-A18G-01 1 94343280 94343280 T C DNTTIP2 Missense_Mutation p.T71A 0.04 tolerated(0.14) benign(0.01) TCGA-BH-A18G-01 1 94649793 94649793 C G ARHGAP29 Missense_Mutation p.A721P 0.35 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 1 94933479 94933479 G A ABCD3 Missense_Mutation p.G84D 0.38 deleterious(0.01) possibly_damaging(0.877) TCGA-BH-A18G-01 1 95360571 95360571 T - SLC44A3 3'UTR 0.34 TCGA-BH-A18G-01 1 95363452 95363452 G T CNN3 Missense_Mutation p.P279H 0.40 deleterious(0) probably_damaging(0.971) TCGA-BH-A18G-01 1 95712513 95712513 A C RWDD3 3'UTR 0.25 TCGA-BH-A18G-01 1 99771829 99771829 G T LPPR4 Missense_Mutation p.G519W 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 20 11903955 11903955 A G BTBD3 Missense_Mutation p.R404G 0.41 deleterious(0) possibly_damaging(0.9) TCGA-BH-A18G-01 20 1515074 1515074 T A SIRPD Missense_Mutation p.K197N 0.36 unknown(0) TCGA-BH-A18G-01 20 16360291 16360291 A G KIF16B Missense_Mutation p.W786R 0.04 tolerated(1) benign(0.001) TCGA-BH-A18G-01 20 23016519 23016519 C T SSTR4 Silent p.S133S 0.30 TCGA-BH-A18G-01 20 23017196 23017196 G A SSTR4 Missense_Mutation p.C359Y 0.38 tolerated(0.72) benign(0) TCGA-BH-A18G-01 20 23402124 23402124 A G NAPB 5'UTR 0.33 TCGA-BH-A18G-01 20 25277269 25277269 A G PYGB 3'UTR 0.36 TCGA-BH-A18G-01 20 32250317 32250318 - G NECAB3 Intron 0.36 TCGA-BH-A18G-01 20 33296585 33296586 - C TP53INP2 Frame_Shift_Ins p.E17Rfs*15 0.44 TCGA-BH-A18G-01 20 33839815 33839815 T A MMP24 Missense_Mutation p.I168N 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 20 33862164 33862164 C T MMP24 Missense_Mutation p.R564C 0.37 deleterious(0) possibly_damaging(0.505) TCGA-BH-A18G-01 20 33875618 33875618 G A FAM83C Silent p.L322L 0.38 TCGA-BH-A18G-01 20 33934945 33934945 G A UQCC1 Intron 0.07 TCGA-BH-A18G-01 20 34143977 34143977 G A ERGIC3 Splice_Site p.X277_splice 0.40 TCGA-BH-A18G-01 20 34618401 34618402 AG - CNBD2 Frame_Shift_Del p.E519Dfs*5 0.37 TCGA-BH-A18G-01 20 34763558 34763558 A G EPB41L1 Missense_Mutation p.Q88R 0.36 deleterious(0.05) benign(0.235) TCGA-BH-A18G-01 20 35547873 35547873 C T SAMHD1 Missense_Mutation p.G249E 0.38 tolerated(0.23) benign(0.049) TCGA-BH-A18G-01 20 37383735 37383735 G A ACTR5 Missense_Mutation p.R304Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 20 4229077 4229077 G A ADRA1D Silent p.D176D 0.34 TCGA-BH-A18G-01 20 43343936 43343936 G A WISP2 Intron 0.42 TCGA-BH-A18G-01 20 43850897 43850897 T C SEMG2 Silent p.R208R 0.40 TCGA-BH-A18G-01 20 43964515 43964515 G A SDC4 Nonsense_Mutation p.R36* 0.34 TCGA-BH-A18G-01 20 44050025 44050025 G C PIGT Missense_Mutation p.A346P 0.29 tolerated(0.24) benign(0.008) TCGA-BH-A18G-01 20 44512102 44512102 G A ZSWIM1 Missense_Mutation p.A291T 0.40 tolerated(0.35) benign(0.025) TCGA-BH-A18G-01 20 44518963 44518963 G A NEURL2 Missense_Mutation p.A223V 0.45 tolerated(0.3) benign(0.022) TCGA-BH-A18G-01 20 45000518 45000518 T G ELMO2 Missense_Mutation p.S503R 0.35 deleterious(0.01) possibly_damaging(0.581) TCGA-BH-A18G-01 20 45353856 45353856 G A SLC2A10 Missense_Mutation p.A61T 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-BH-A18G-01 20 469361 469361 T C CSNK2A1 Missense_Mutation p.N262S 0.36 tolerated(0.13) benign(0.003) TCGA-BH-A18G-01 20 47256378 47256378 C T PREX1 Missense_Mutation p.S1277N 0.32 tolerated(0.42) benign(0.005) TCGA-BH-A18G-01 20 47592725 47592725 C T ARFGEF2 Silent p.H649H 0.09 TCGA-BH-A18G-01 20 47870291 47870291 T C ZNFX1 Missense_Mutation p.E1006G 0.37 deleterious(0) probably_damaging(0.94) TCGA-BH-A18G-01 20 4837735 4837735 T - SLC23A2 Frame_Shift_Del p.K612Nfs*64 0.32 TCGA-BH-A18G-01 20 48491322 48491322 A G SLC9A8 Missense_Mutation p.M363V 0.36 tolerated(0.38) benign(0.004) TCGA-BH-A18G-01 20 4855308 4855308 C T SLC23A2 Missense_Mutation p.A287T 0.34 deleterious(0) benign(0.239) TCGA-BH-A18G-01 20 49575857 49575857 G A MOCS3 Missense_Mutation p.A160T 0.33 tolerated(0.5) benign(0.027) TCGA-BH-A18G-01 20 51870658 51870658 A G TSHZ2 Missense_Mutation p.S221G 0.39 deleterious(0.05) probably_damaging(0.993) TCGA-BH-A18G-01 20 56098943 56098943 C T CTCFL Missense_Mutation p.G107R 0.35 tolerated(0.21) possibly_damaging(0.59) TCGA-BH-A18G-01 20 5953787 5953787 A T MCM8 Missense_Mutation p.D447V 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 20 61431073 61431073 C - MRGBP 3'UTR 0.56 TCGA-BH-A18G-01 20 61541303 61541303 T C DIDO1 Silent p.R303R 0.04 TCGA-BH-A18G-01 20 61834907 61834907 A G YTHDF1 Missense_Mutation p.F129L 0.35 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 20 61959823 61959823 C T COL20A1 Missense_Mutation p.R1252C 0.50 tolerated(0.12) benign(0.116) TCGA-BH-A18G-01 20 62062704 62062704 G T KCNQ2 Nonsense_Mutation p.Y379* 0.35 TCGA-BH-A18G-01 20 62340427 62340427 C T ZGPAT Silent p.V165V 0.29 TCGA-BH-A18G-01 20 62729364 62729364 G A OPRL1 Missense_Mutation p.R148H 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 20 62899302 62899302 T - PCMTD2 Frame_Shift_Del p.F216Lfs*4 0.37 TCGA-BH-A18G-01 20 9318694 9318694 C T PLCB4 Missense_Mutation p.R69W 0.43 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 20 9382159 9382159 C - PLCB4 Frame_Shift_Del p.E513Nfs*30 0.29 TCGA-BH-A18G-01 20 9510335 9510335 G A LAMP5 Silent p.L237L 0.40 TCGA-BH-A18G-01 20 9520119 9520119 C A PAK7 Missense_Mutation p.R717M 0.05 deleterious(0) probably_damaging(0.953) TCGA-BH-A18G-01 21 10862766 10862766 T C IGHV1OR21-1 Missense_Mutation p.V21A 0.18 deleterious(0.02) possibly_damaging(0.512) TCGA-BH-A18G-01 21 11049525 11049525 C T BAGE2 RNA 0.07 TCGA-BH-A18G-01 21 15755491 15755491 G A HSPA13 5'UTR 0.42 TCGA-BH-A18G-01 21 30380226 30380226 C A RWDD2B Missense_Mutation p.S194I 0.04 deleterious(0) probably_damaging(0.991) TCGA-BH-A18G-01 21 33679042 33679042 G A MRAP Silent p.P66P 0.38 TCGA-BH-A18G-01 21 34957050 34957050 G A DONSON Missense_Mutation p.R211C 0.34 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 21 35183510 35183510 G A ITSN1 Missense_Mutation p.A851T 0.33 tolerated(0.17) benign(0.119) TCGA-BH-A18G-01 21 35895891 35895891 G A RCAN1 Missense_Mutation p.L124F 0.05 deleterious(0.03) possibly_damaging(0.88) TCGA-BH-A18G-01 21 38309042 38309042 C T HLCS Missense_Mutation p.A235T 0.32 tolerated(0.63) possibly_damaging(0.882) TCGA-BH-A18G-01 21 40250690 40250690 A G AF064858.6 RNA 0.36 TCGA-BH-A18G-01 21 40969873 40969873 C G C21orf88 Missense_Mutation p.V66L 0.52 deleterious_low_confidence(0) benign(0.205) TCGA-BH-A18G-01 21 41459182 41459182 C A DSCAM Missense_Mutation p.V1295L 0.36 tolerated(0.19) possibly_damaging(0.728) TCGA-BH-A18G-01 21 41516495 41516495 C T DSCAM Missense_Mutation p.G1061D 0.40 tolerated(0.08) possibly_damaging(0.491) TCGA-BH-A18G-01 21 42647649 42647649 G A BACE2 3'UTR 0.36 TCGA-BH-A18G-01 21 45553575 45553575 C T C21orf33 5'UTR 0.40 TCGA-BH-A18G-01 21 45752960 45752960 G T C21orf2 Missense_Mutation p.T110N 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-BH-A18G-01 21 45919820 45919820 C A TSPEAR Splice_Site p.X619_splice 0.33 TCGA-BH-A18G-01 21 46000150 46000150 G T KRTAP10-5 Silent p.T102T 0.37 TCGA-BH-A18G-01 21 46047347 46047347 C T KRTAP10-9 Missense_Mutation p.P87S 0.39 tolerated(0.06) unknown(0) TCGA-BH-A18G-01 21 46306283 46306283 C A ITGB2 Nonstop_Mutation p.*770Yext*28 0.41 TCGA-BH-A18G-01 21 46363690 46363690 T C FAM207A Missense_Mutation p.V74A 0.04 tolerated(0.09) benign(0.011) TCGA-BH-A18G-01 21 47361682 47361682 G A PCBP3 3'UTR 0.46 TCGA-BH-A18G-01 21 47695129 47695129 C T MCM3AP Missense_Mutation p.V657M 0.30 deleterious(0.03) possibly_damaging(0.565) TCGA-BH-A18G-01 21 47783399 47783399 A G PCNT Missense_Mutation p.K720R 0.07 possibly_damaging(0.636) TCGA-BH-A18G-01 21 48069525 48069525 G A PRMT2 Silent p.T176T 0.04 TCGA-BH-A18G-01 21 9908183 9908183 G A TEKT4P2 RNA 0.33 TCGA-BH-A18G-01 22 17978531 17978531 C T CECR2 Silent p.Y124Y 0.32 TCGA-BH-A18G-01 22 18226752 18226752 C T BID Missense_Mutation p.E60K 0.11 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 22 19029441 19029441 G A DGCR2 Silent p.S346S 0.33 TCGA-BH-A18G-01 22 19076944 19076944 G - DGCR2 Frame_Shift_Del p.L47Sfs*23 0.51 TCGA-BH-A18G-01 22 19188989 19188989 A G CLTCL1 Missense_Mutation p.Y1206H 0.05 deleterious(0) probably_damaging(0.992) TCGA-BH-A18G-01 22 19751741 19751741 C T TBX1 Silent p.R192R 0.36 TCGA-BH-A18G-01 22 20386703 20386703 A C PI4KAP1 RNA 0.50 TCGA-BH-A18G-01 22 22287849 22287849 G A PPM1F Missense_Mutation p.P221S 0.38 tolerated(0.35) possibly_damaging(0.507) TCGA-BH-A18G-01 22 22937278 22937278 G A IGLV3-32 Silent p.L32L 0.36 TCGA-BH-A18G-01 22 22937402 22937402 A G IGLV3-32 Missense_Mutation p.R74G 0.36 tolerated(1) benign(0) TCGA-BH-A18G-01 22 22937403 22937403 G A IGLV3-32 Missense_Mutation p.R74K 0.36 deleterious(0) benign(0.006) TCGA-BH-A18G-01 22 24582000 24582000 C G SUSD2 Missense_Mutation p.D452E 0.21 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 22 25251362 25251362 C T SGSM1 Missense_Mutation p.R212W 0.37 deleterious(0) probably_damaging(0.982) TCGA-BH-A18G-01 22 26164407 26164407 C - MYO18B Frame_Shift_Del p.P177Lfs*55 0.27 TCGA-BH-A18G-01 22 26688396 26688396 G A SEZ6L Missense_Mutation p.S40N 0.36 tolerated_low_confidence(0.16) benign(0) TCGA-BH-A18G-01 22 26862057 26862057 T C HPS4 Intron 0.44 TCGA-BH-A18G-01 22 26932298 26932299 - GG TPST2 Frame_Shift_Ins p.N333Pfs*18 0.31 TCGA-BH-A18G-01 22 28503539 28503539 C T TTC28 Missense_Mutation p.R765Q 0.36 deleterious(0.03) probably_damaging(0.916) TCGA-BH-A18G-01 22 29455033 29455033 A G C22orf31 Silent p.P190P 0.37 TCGA-BH-A18G-01 22 29838122 29838123 - A RFPL1 3'UTR 0.31 TCGA-BH-A18G-01 22 30733834 30733834 C T SF3A1 Missense_Mutation p.R599Q 0.42 tolerated(0.68) possibly_damaging(0.885) TCGA-BH-A18G-01 22 31060038 31060038 G A DUSP18 5'UTR 0.14 TCGA-BH-A18G-01 22 31496909 31496909 A G SMTN Missense_Mutation p.D881G 0.32 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 22 31500430 31500430 G A SMTN Missense_Mutation p.R934H 0.32 deleterious(0) probably_damaging(0.974) TCGA-BH-A18G-01 22 31536080 31536080 A G PLA2G3 Silent p.C87C 0.26 TCGA-BH-A18G-01 22 32110826 32110827 - TC PRR14L Frame_Shift_Ins p.T1000Rfs*10 0.33 TCGA-BH-A18G-01 22 32545534 32545534 C T C22orf42 Missense_Mutation p.R250Q 0.34 deleterious_low_confidence(0) benign(0.417) TCGA-BH-A18G-01 22 32831828 32831829 - G BPIFC Frame_Shift_Ins p.F263Lfs*26 0.34 TCGA-BH-A18G-01 22 32923944 32923944 G A SYN3 Missense_Mutation p.P427S 0.38 tolerated(0.06) unknown(0) TCGA-BH-A18G-01 22 33670448 33670448 C T LARGE Missense_Mutation p.A746T 0.38 tolerated(0.05) probably_damaging(0.998) TCGA-BH-A18G-01 22 36680450 36680450 T G MYH9 Missense_Mutation p.Q1864P 0.41 probably_damaging(0.953) TCGA-BH-A18G-01 22 36698708 36698708 C A MYH9 Missense_Mutation p.R802L 0.44 possibly_damaging(0.781) TCGA-BH-A18G-01 22 38028688 38028688 C - GGA1 Frame_Shift_Del p.P632Hfs*59 0.43 TCGA-BH-A18G-01 22 38282787 38282787 G A EIF3L Missense_Mutation p.A531T 0.42 tolerated(0.06) probably_damaging(0.918) TCGA-BH-A18G-01 22 38369999 38369999 G A SOX10 Missense_Mutation p.P302S 0.28 deleterious(0) probably_damaging(0.994) TCGA-BH-A18G-01 22 38565434 38565434 C A PLA2G6 5'UTR 0.35 TCGA-BH-A18G-01 22 39388518 39388518 C T APOBEC3B 3'UTR 0.05 TCGA-BH-A18G-01 22 39884975 39884975 T C MGAT3 3'UTR 0.20 TCGA-BH-A18G-01 22 41566525 41566525 A - EP300 Frame_Shift_Del p.M1470Cfs*26 0.31 TCGA-BH-A18G-01 22 41573569 41573569 A G EP300 Missense_Mutation p.I1952V 0.36 benign(0.052) TCGA-BH-A18G-01 22 41753319 41753319 C T ZC3H7B Silent p.C940C 0.35 TCGA-BH-A18G-01 22 41903928 41903928 G T ACO2 Missense_Mutation p.A103S 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BH-A18G-01 22 42564716 42564716 G - TCF20 Frame_Shift_Del p.L1943Cfs*118 0.42 TCGA-BH-A18G-01 22 46345958 46345958 C T WNT7B Missense_Mutation p.R47Q 0.56 tolerated(0.2) possibly_damaging(0.744) TCGA-BH-A18G-01 22 46654179 46654179 G A PKDREJ Nonsense_Mutation p.R1681* 0.40 TCGA-BH-A18G-01 22 46658466 46658466 C T PKDREJ Missense_Mutation p.A252T 0.22 tolerated(0.36) benign(0.086) TCGA-BH-A18G-01 22 50716373 50716373 C T PLXNB2 Missense_Mutation p.A1653T 0.35 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 22 50728157 50728157 G A PLXNB2 Missense_Mutation p.A286V 0.26 tolerated(0.34) benign(0.004) TCGA-BH-A18G-01 2 100019234 100019234 C G REV1 Silent p.V1138V 0.33 TCGA-BH-A18G-01 2 100055545 100055545 G A REV1 Missense_Mutation p.P244L 0.35 tolerated(0.06) benign(0.003) TCGA-BH-A18G-01 2 101594239 101594239 G A NPAS2 Missense_Mutation p.S487N 0.35 tolerated(0.41) benign(0.002) TCGA-BH-A18G-01 2 10567054 10567054 G A HPCAL1 3'UTR 0.28 TCGA-BH-A18G-01 2 108881321 108881321 A - SULT1C3 Frame_Shift_Del p.D223Tfs*7 0.30 TCGA-BH-A18G-01 2 109087883 109087884 - A GCC2 Frame_Shift_Ins p.Q703Tfs*4 0.31 TCGA-BH-A18G-01 2 110902119 110902119 A G NPHP1 Silent p.G516G 0.33 TCGA-BH-A18G-01 2 111416211 111416211 A G BUB1 Missense_Mutation p.V462A 0.02 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 2 112592360 112592360 A G ANAPC1 Silent p.A735A 0.42 TCGA-BH-A18G-01 2 113513917 113513917 T C CKAP2L Missense_Mutation p.Y344C 0.42 tolerated(0.18) benign(0.001) TCGA-BH-A18G-01 2 115919758 115919758 G A DPP10 Intron 0.50 TCGA-BH-A18G-01 2 118577295 118577295 A G DDX18 Silent p.T147T 0.39 TCGA-BH-A18G-01 2 122363401 122363401 C T CLASP1 Missense_Mutation p.G24D 0.37 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 2 128038139 128038139 C T ERCC3 Missense_Mutation p.V471I 0.06 deleterious(0) possibly_damaging(0.905) TCGA-BH-A18G-01 2 130832949 130832949 A G POTEF Missense_Mutation p.L699P 0.33 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-BH-A18G-01 2 130872458 130872458 T - POTEF Frame_Shift_Del p.N269Tfs*20 0.38 TCGA-BH-A18G-01 2 130952658 130952658 G A TUBA3E Silent p.R123R 0.44 TCGA-BH-A18G-01 2 131595195 131595195 A G AC133785.1 5'Flank 0.47 TCGA-BH-A18G-01 2 132235829 132235829 C T TUBA3D Silent p.P32P 0.33 TCGA-BH-A18G-01 2 132277882 132277882 G A AC093838.4 RNA 0.33 TCGA-BH-A18G-01 2 141259407 141259407 T - LRP1B Frame_Shift_Del p.N2900Mfs*28 0.32 TCGA-BH-A18G-01 2 144903240 144903240 T C GTDC1 Silent p.K82K 0.07 TCGA-BH-A18G-01 2 151331469 151331469 G T RND3 Missense_Mutation p.L90I 0.37 deleterious(0) probably_damaging(0.976) TCGA-BH-A18G-01 2 152289601 152289601 T C RIF1 Silent p.C312C 0.35 TCGA-BH-A18G-01 2 160692127 160692127 C A LY75-CD302 Silent p.G1179G 0.47 TCGA-BH-A18G-01 2 160889563 160889563 A G PLA2R1 Missense_Mutation p.S250P 0.03 deleterious(0.04) possibly_damaging(0.808) TCGA-BH-A18G-01 2 160980367 160980367 C T ITGB6 Missense_Mutation p.G639D 0.43 tolerated(0.22) benign(0.004) TCGA-BH-A18G-01 2 166731196 166731196 G A TTC21B 3'UTR 0.16 TCGA-BH-A18G-01 2 166848778 166848778 C T SCN1A Silent p.A1669A 0.33 TCGA-BH-A18G-01 2 170668751 170668752 - T METTL5 Intron 0.47 TCGA-BH-A18G-01 2 170780473 170780473 T C UBR3 Missense_Mutation p.L634P 0.04 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 2 170885882 170885882 C T UBR3 Missense_Mutation p.H1494Y 0.35 deleterious(0) probably_damaging(0.979) TCGA-BH-A18G-01 2 172325520 172325520 G A DCAF17 Missense_Mutation p.A321T 0.37 deleterious(0.01) possibly_damaging(0.547) TCGA-BH-A18G-01 2 17881629 17881629 T C SMC6 Missense_Mutation p.E747G 0.16 deleterious(0) possibly_damaging(0.794) TCGA-BH-A18G-01 2 179452813 179452813 T C TTN Missense_Mutation p.I21107M 0.37 TCGA-BH-A18G-01 2 179489400 179489400 A G TTN Silent p.T14869T 0.40 TCGA-BH-A18G-01 2 179612822 179612823 - T TTN Intron 0.31 TCGA-BH-A18G-01 2 187531911 187531911 T C ITGAV Missense_Mutation p.S761P 0.39 tolerated(0.12) probably_damaging(0.953) TCGA-BH-A18G-01 2 189874938 189874938 A T COL3A1 Missense_Mutation p.K1286N 0.40 unknown(0) TCGA-BH-A18G-01 2 192252145 192252145 A G MYO1B Missense_Mutation p.N584D 0.22 tolerated(0.06) benign(0.06) TCGA-BH-A18G-01 2 202131302 202131302 G A CASP8 Silent p.P90P 0.40 TCGA-BH-A18G-01 2 203848327 203848327 A G CARF Missense_Mutation p.K720E 0.14 deleterious_low_confidence(0.04) benign(0.019) TCGA-BH-A18G-01 2 20463032 20463032 T C PUM2 Missense_Mutation p.N716S 0.39 tolerated(0.13) benign(0.102) TCGA-BH-A18G-01 2 206608157 206608157 G A NRP2 Missense_Mutation p.G508R 0.43 deleterious(0.03) probably_damaging(0.987) TCGA-BH-A18G-01 2 206659845 206659845 T - NRP2 3'UTR 0.36 TCGA-BH-A18G-01 2 206920991 206920991 G A INO80D Nonsense_Mutation p.R299* 0.36 TCGA-BH-A18G-01 2 207174377 207174377 G A ZDBF2 Missense_Mutation p.A1709T 0.38 tolerated(0.1) possibly_damaging(0.483) TCGA-BH-A18G-01 2 214013359 214013359 A G IKZF2 5'UTR 0.30 TCGA-BH-A18G-01 2 219301940 219301940 C T VIL1 Missense_Mutation p.R689C 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 2 219423423 219423423 A G USP37 Intron 0.39 TCGA-BH-A18G-01 2 220111841 220111841 A G STK16 Missense_Mutation p.T105A 0.38 deleterious(0.01) benign(0.417) TCGA-BH-A18G-01 2 220473024 220473024 C T STK11IP Missense_Mutation p.A503V 0.44 tolerated(0.32) benign(0.001) TCGA-BH-A18G-01 2 220494034 220494035 - G SLC4A3 Frame_Shift_Ins p.A132Sfs*5 0.34 TCGA-BH-A18G-01 2 222428573 222428573 A G EPHA4 Missense_Mutation p.V234A 0.39 deleterious(0) possibly_damaging(0.857) TCGA-BH-A18G-01 2 225376276 225376276 T C CUL3 Silent p.A226A 0.38 TCGA-BH-A18G-01 2 231380093 231380093 G A SP100 Intron 0.38 TCGA-BH-A18G-01 2 232321172 232321172 T C NCL Intron 0.44 TCGA-BH-A18G-01 2 233199417 233199417 A G DIS3L2 Missense_Mutation p.Y789C 0.06 deleterious(0) possibly_damaging(0.664) TCGA-BH-A18G-01 2 233244618 233244618 C T ALPP Missense_Mutation p.T210M 0.29 tolerated(0.22) possibly_damaging(0.785) TCGA-BH-A18G-01 2 233396354 233396354 G - CHRND Frame_Shift_Del p.V347Sfs*89 0.35 TCGA-BH-A18G-01 2 234229296 234229296 G A SAG Missense_Mutation p.A68T 0.33 tolerated(0.1) benign(0.383) TCGA-BH-A18G-01 2 234356734 234356734 T C DGKD Missense_Mutation p.V474A 0.34 tolerated(0.26) benign(0.057) TCGA-BH-A18G-01 2 234681079 234681079 T C UGT1A4 Silent p.I493I 0.38 TCGA-BH-A18G-01 2 238234210 238234210 G A COL6A3 Silent p.C3162C 0.36 TCGA-BH-A18G-01 2 238419703 238419703 C T MLPH Missense_Mutation p.A135V 0.37 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 2 238436066 238436066 C T MLPH Silent p.A309A 0.32 TCGA-BH-A18G-01 2 238725800 238725800 T - RBM44 Frame_Shift_Del p.S83Qfs*2 0.28 TCGA-BH-A18G-01 2 240024515 240024515 C T HDAC4 Silent p.T725T 0.04 TCGA-BH-A18G-01 2 240500165 240500165 C A AC079612.1 Missense_Mutation p.L16M 0.39 benign(0.002) TCGA-BH-A18G-01 2 241078529 241078529 G A OTOS 3'UTR 0.25 TCGA-BH-A18G-01 2 241496666 241496666 G A ANKMY1 5'UTR 0.48 TCGA-BH-A18G-01 2 24199863 24199863 A - UBXN2A Frame_Shift_Del p.N70Tfs*21 0.37 TCGA-BH-A18G-01 2 242076639 242076639 C T PASK Missense_Mutation p.G306D 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-BH-A18G-01 2 242082328 242082328 C T PASK Silent p.S40S 0.35 TCGA-BH-A18G-01 2 242168835 242168835 G A HDLBP 3'UTR 0.39 TCGA-BH-A18G-01 2 25967093 25967093 C A ASXL2 Missense_Mutation p.G705C 0.42 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-BH-A18G-01 2 26536705 26536705 T C GPR113 Missense_Mutation p.D400G 0.40 deleterious(0.02) possibly_damaging(0.637) TCGA-BH-A18G-01 2 27245149 27245149 T C MAPRE3 Silent p.L21L 0.04 TCGA-BH-A18G-01 2 27303605 27303605 G A EMILIN1 Missense_Mutation p.R99H 0.28 probably_damaging(0.998) TCGA-BH-A18G-01 2 27552349 27552349 G A GTF3C2 Nonsense_Mutation p.Q592* 0.36 TCGA-BH-A18G-01 2 27658018 27658018 C - NRBP1 Frame_Shift_Del p.I198Sfs*6 0.37 TCGA-BH-A18G-01 2 30379551 30379551 A G YPEL5 Missense_Mutation p.T12A 0.36 tolerated(0.71) benign(0.003) TCGA-BH-A18G-01 2 3217957 3217957 A G TSSC1 Missense_Mutation p.L160P 0.35 tolerated(0.11) probably_damaging(0.979) TCGA-BH-A18G-01 2 32694531 32694531 T C BIRC6 Silent p.L2066L 0.05 TCGA-BH-A18G-01 2 32740628 32740628 G A BIRC6 Missense_Mutation p.A3714T 0.29 benign(0.212) TCGA-BH-A18G-01 2 38408255 38408255 C T CYP1B1-AS1 RNA 0.45 TCGA-BH-A18G-01 2 38958912 38958912 T C GALM Missense_Mutation p.V271A 0.45 deleterious(0.01) possibly_damaging(0.689) TCGA-BH-A18G-01 2 40405624 40405624 T C SLC8A1 Missense_Mutation p.I606M 0.35 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 2 42578275 42578275 A - COX7A2L 3'UTR 0.37 TCGA-BH-A18G-01 2 44933460 44933460 A G CAMKMT Missense_Mutation p.T158A 0.37 deleterious(0) possibly_damaging(0.591) TCGA-BH-A18G-01 2 44999309 44999310 - A CAMKMT 3'UTR 0.26 TCGA-BH-A18G-01 2 48035554 48035554 A G FBXO11 Silent p.C856C 0.05 TCGA-BH-A18G-01 2 54081275 54081276 AG - GPR75 Frame_Shift_Del p.Y207Cfs*66 0.30 TCGA-BH-A18G-01 2 54154539 54154539 G T PSME4 Missense_Mutation p.L529I 0.32 tolerated(0.06) benign(0.141) TCGA-BH-A18G-01 2 55194167 55194167 A G EML6 Missense_Mutation p.H1842R 0.07 deleterious(0.02) benign(0.163) TCGA-BH-A18G-01 2 61431727 61431727 T C USP34 Missense_Mutation p.K3055R 0.35 tolerated(0.19) benign(0.085) TCGA-BH-A18G-01 2 63605645 63605645 C T WDPCP Splice_Site p.X542_splice 0.40 TCGA-BH-A18G-01 2 69704074 69704074 G A AAK1 Missense_Mutation p.S910L 0.40 tolerated(0.09) possibly_damaging(0.557) TCGA-BH-A18G-01 2 70165487 70165487 T C MXD1 3'UTR 0.35 TCGA-BH-A18G-01 2 71185491 71185491 C T ATP6V1B1 Missense_Mutation p.A101V 0.35 tolerated(0.58) benign(0.017) TCGA-BH-A18G-01 2 71791210 71791210 T C DYSF Missense_Mutation p.I811T 0.29 deleterious(0) benign(0.237) TCGA-BH-A18G-01 2 71839797 71839797 C - DYSF Frame_Shift_Del p.I1419Sfs*47 0.36 TCGA-BH-A18G-01 2 73959365 73959365 G C TPRKB Missense_Mutation p.H63Q 0.32 deleterious(0) probably_damaging(0.978) TCGA-BH-A18G-01 2 77746929 77746929 C A LRRTM4 Silent p.L22L 0.36 TCGA-BH-A18G-01 2 79350482 79350482 T C REG1A 3'UTR 0.33 TCGA-BH-A18G-01 2 84811196 84811196 C T DNAH6 Missense_Mutation p.T768I 0.36 tolerated(0.8) benign(0.002) TCGA-BH-A18G-01 2 85551923 85551923 G A TGOLN2 Intron 0.37 TCGA-BH-A18G-01 2 8870951 8870951 G A KIDINS220 Missense_Mutation p.R1739C 0.35 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-BH-A18G-01 2 90154041 90154041 G A IGKV3D-15 Missense_Mutation p.C43Y 0.37 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 2 90229434 90229434 G A IGKV1D-42 Missense_Mutation p.S85N 0.41 deleterious(0) possibly_damaging(0.504) TCGA-BH-A18G-01 2 9525431 9525431 C T ASAP2 Nonsense_Mutation p.R692* 0.31 TCGA-BH-A18G-01 2 97526276 97526276 C T SEMA4C 3'UTR 0.50 TCGA-BH-A18G-01 2 98197016 98197016 G A ANKRD36B RNA 0.36 TCGA-BH-A18G-01 2 99013208 99013209 - AA CNGA3 Frame_Shift_Ins p.L527Sfs*28 0.33 TCGA-BH-A18G-01 3 100057981 100057981 A G NIT2 Missense_Mutation p.N20D 0.34 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 3 100432553 100432553 T C TFG Silent p.S8S 0.40 TCGA-BH-A18G-01 3 10353670 10353674 CTTTA - SEC13 Frame_Shift_Del p.V142Efs*45 0.36 TCGA-BH-A18G-01 3 107497243 107497244 - A BBX Frame_Shift_Ins p.F697Ifs*8 0.25 TCGA-BH-A18G-01 3 108572596 108572596 G A TRAT1 Missense_Mutation p.A145T 0.39 tolerated(0.58) benign(0.023) TCGA-BH-A18G-01 3 108639298 108639298 T C GUCA1C Silent p.L113L 0.06 TCGA-BH-A18G-01 3 111681100 111681100 C T PHLDB2 Silent p.L1006L 0.30 TCGA-BH-A18G-01 3 120401163 120401163 A G HGD 5'UTR 0.47 TCGA-BH-A18G-01 3 121396142 121396142 T C GOLGB1 Missense_Mutation p.Y3010C 0.03 probably_damaging(0.959) TCGA-BH-A18G-01 3 122123122 122123122 C T FAM162A Missense_Mutation p.P59S 0.38 deleterious(0) possibly_damaging(0.817) TCGA-BH-A18G-01 3 123376171 123376171 G A MYLK Nonsense_Mutation p.Q1364* 0.41 TCGA-BH-A18G-01 3 123401149 123401149 C T MYLK Missense_Mutation p.A1192T 0.33 tolerated(0.35) benign(0.002) TCGA-BH-A18G-01 3 123650066 123650066 A G CCDC14 Missense_Mutation p.L561P 0.33 deleterious(0) probably_damaging(0.955) TCGA-BH-A18G-01 3 123697789 123697789 C T ROPN1 Intron 0.36 TCGA-BH-A18G-01 3 126070934 126070934 A G KLF15 Missense_Mutation p.F278L 0.37 deleterious(0.02) probably_damaging(0.968) TCGA-BH-A18G-01 3 127649058 127649058 G A KBTBD12 Missense_Mutation p.R475Q 0.36 tolerated(0.13) benign(0.009) TCGA-BH-A18G-01 3 130114005 130114005 A - COL6A5 Frame_Shift_Del p.V1091* 0.27 TCGA-BH-A18G-01 3 130187729 130187729 T C COL6A5 Missense_Mutation p.F2294S 0.36 deleterious(0) probably_damaging(0.994) TCGA-BH-A18G-01 3 132235651 132235651 A G DNAJC13 Missense_Mutation p.I1888M 0.36 tolerated(0.14) benign(0.104) TCGA-BH-A18G-01 3 133167374 133167374 A G BFSP2 Missense_Mutation p.E205G 0.35 deleterious(0) probably_damaging(0.964) TCGA-BH-A18G-01 3 133374202 133374202 T C TOPBP1 Missense_Mutation p.H225R 0.37 deleterious(0) possibly_damaging(0.847) TCGA-BH-A18G-01 3 13368891 13368891 C T NUP210 Missense_Mutation p.V1445I 0.43 tolerated(0.22) benign(0.008) TCGA-BH-A18G-01 3 134644703 134644703 C T EPHB1 Missense_Mutation p.T35M 0.38 tolerated(0.13) possibly_damaging(0.473) TCGA-BH-A18G-01 3 136019953 136019953 T G PCCB Silent p.S342S 0.37 TCGA-BH-A18G-01 3 142430808 142430808 T C PLS1 Missense_Mutation p.F617L 0.37 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 3 14862972 14862972 C T FGD5 Silent p.G798G 0.34 TCGA-BH-A18G-01 3 149089471 149089471 T C TM4SF1 Intron 0.32 TCGA-BH-A18G-01 3 149678568 149678568 A - RNF13 Frame_Shift_Del p.T277Pfs*29 0.34 TCGA-BH-A18G-01 3 152554350 152554350 A G P2RY1 Missense_Mutation p.Y260C 0.39 deleterious(0) probably_damaging(0.911) TCGA-BH-A18G-01 3 154898388 154898388 A G MME 3'UTR 0.38 TCGA-BH-A18G-01 3 155232558 155232558 G A PLCH1 Missense_Mutation p.A517V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 3 15643330 15643330 G A BTD 5'UTR 0.05 TCGA-BH-A18G-01 3 158315964 158315964 G T MLF1 Missense_Mutation p.Q156H 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A18G-01 3 160146629 160146629 A G SMC4 Silent p.K898K 0.34 TCGA-BH-A18G-01 3 160253653 160253653 C T KPNA4 Silent p.R49R 0.06 TCGA-BH-A18G-01 3 164739039 164739039 G A SI Missense_Mutation p.R1078W 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 3 169381319 169381319 C T MECOM 5'Flank 0.34 TCGA-BH-A18G-01 3 169513127 169513127 A G LRRC34 Intron 0.52 TCGA-BH-A18G-01 3 169526458 169526458 A G LRRC34 Missense_Mutation p.I72T 0.04 deleterious(0) possibly_damaging(0.844) TCGA-BH-A18G-01 3 170846513 170846513 A G TNIK Missense_Mutation p.V588A 0.34 deleterious(0.04) benign(0.366) TCGA-BH-A18G-01 3 172115197 172115197 A G FNDC3B Missense_Mutation p.I1183V 0.38 tolerated(0.08) benign(0.013) TCGA-BH-A18G-01 3 182636012 182636012 A G ATP11B 3'UTR 0.43 TCGA-BH-A18G-01 3 18436303 18436303 G A SATB1 Missense_Mutation p.A286V 0.32 tolerated(0.48) benign(0.004) TCGA-BH-A18G-01 3 185232291 185232291 T A LIPH Missense_Mutation p.D334V 0.02 deleterious(0) possibly_damaging(0.686) TCGA-BH-A18G-01 3 185390423 185390423 C T IGF2BP2 Missense_Mutation p.S369N 0.05 tolerated(0.79) benign(0.002) TCGA-BH-A18G-01 3 186917406 186917406 C A RTP1 Missense_Mutation p.L114M 0.43 deleterious(0.02) probably_damaging(0.983) TCGA-BH-A18G-01 3 191087808 191087808 A G CCDC50 Missense_Mutation p.Y144C 0.41 tolerated(0.05) benign(0.082) TCGA-BH-A18G-01 3 19295239 19295239 G A KCNH8 Missense_Mutation p.R57Q 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 3 194080416 194080416 A G LRRC15 Missense_Mutation p.C459R 0.40 deleterious(0) possibly_damaging(0.884) TCGA-BH-A18G-01 3 195512843 195512843 C T MUC4 Missense_Mutation p.A1870T 0.18 unknown(0) TCGA-BH-A18G-01 3 196083500 196083500 G A UBXN7 3'UTR 0.41 TCGA-BH-A18G-01 3 196735739 196735739 G C MFI2 Silent p.G541G 0.35 TCGA-BH-A18G-01 3 20202562 20202562 A - SGOL1 3'UTR 0.28 TCGA-BH-A18G-01 3 25761040 25761040 C T NGLY1 Missense_Mutation p.A626T 0.36 deleterious(0.01) probably_damaging(0.956) TCGA-BH-A18G-01 3 2908526 2908526 C T CNTN4 Missense_Mutation p.A182V 0.06 deleterious(0) probably_damaging(0.973) TCGA-BH-A18G-01 3 3067928 3067928 C T CNTN4 Silent p.D543D 0.31 TCGA-BH-A18G-01 3 3139881 3139881 T C IL5RA Missense_Mutation p.H154R 0.36 tolerated(0.38) benign(0.013) TCGA-BH-A18G-01 3 33038340 33038340 T C GLB1 3'UTR 0.26 TCGA-BH-A18G-01 3 37365196 37365196 G A GOLGA4 Missense_Mutation p.V629I 0.56 benign(0.005) TCGA-BH-A18G-01 3 38039794 38039794 A G VILL Missense_Mutation p.Y294C 0.09 deleterious(0) probably_damaging(0.987) TCGA-BH-A18G-01 3 38616941 38616941 G T SCN5A Silent p.G1171G 0.50 TCGA-BH-A18G-01 3 39227239 39227239 C T XIRP1 Missense_Mutation p.R1233H 0.60 tolerated_low_confidence(1) benign(0.001) TCGA-BH-A18G-01 3 43408450 43408450 G A ANO10 Missense_Mutation p.T644I 0.68 tolerated(0.06) benign(0.002) TCGA-BH-A18G-01 3 48732633 48732633 C T IP6K2 Missense_Mutation p.C31Y 0.05 deleterious(0.02) possibly_damaging(0.877) TCGA-BH-A18G-01 3 50330902 50330902 G A HYAL3 Silent p.G343G 0.57 TCGA-BH-A18G-01 3 50391135 50391135 T C CYB561D2 Missense_Mutation p.V210A 0.88 deleterious(0) probably_damaging(0.943) TCGA-BH-A18G-01 3 52861123 52861123 G A ITIH4 Silent p.S114S 0.68 TCGA-BH-A18G-01 3 57843500 57843500 C T SLMAP Missense_Mutation p.A187V 0.10 deleterious(0.04) possibly_damaging(0.542) TCGA-BH-A18G-01 3 62739237 62739237 G A CADPS Missense_Mutation p.A256V 0.34 tolerated(0.23) possibly_damaging(0.483) TCGA-BH-A18G-01 3 69167864 69167864 C T LMOD3 Missense_Mutation p.A548T 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18G-01 3 73433945 73433945 T C PDZRN3 Missense_Mutation p.D591G 0.37 deleterious(0.03) benign(0.298) TCGA-BH-A18G-01 3 74315770 74315770 C T CNTN3 Missense_Mutation p.V950I 0.35 tolerated(0.2) benign(0.014) TCGA-BH-A18G-01 3 8609226 8609226 A G LMCD1 Missense_Mutation p.Y347C 0.37 deleterious(0) probably_damaging(0.968) TCGA-BH-A18G-01 3 89448493 89448493 T C EPHA3 Missense_Mutation p.I486T 0.35 tolerated(1) probably_damaging(0.996) TCGA-BH-A18G-01 3 9714435 9714435 G A MTMR14 Silent p.P248P 0.31 TCGA-BH-A18G-01 3 98512725 98512725 G T ST3GAL6 3'UTR 0.40 TCGA-BH-A18G-01 3 9860332 9860332 G A TTLL3 Intron 0.43 TCGA-BH-A18G-01 3 9948726 9948726 G A IL17RE Missense_Mutation p.R203H 0.06 deleterious(0.02) benign(0.439) TCGA-BH-A18G-01 3 99567225 99567225 C T FILIP1L Missense_Mutation p.A1099T 0.38 tolerated(1) benign(0.001) TCGA-BH-A18G-01 4 100200633 100200633 T C ADH1A Silent p.L351L 0.37 TCGA-BH-A18G-01 4 10023071 10023071 C T SLC2A9 5'UTR 0.39 TCGA-BH-A18G-01 4 100824995 100824995 G A DNAJB14 Silent p.N301N 0.30 TCGA-BH-A18G-01 4 101108933 101108933 G A DDIT4L Silent p.S161S 0.33 TCGA-BH-A18G-01 4 1019088 1019088 T A FGFRL1 Missense_Mutation p.S490T 0.22 tolerated(0.12) benign(0.057) TCGA-BH-A18G-01 4 106196445 106196445 G A TET2 Missense_Mutation p.S1593N 0.46 tolerated(1) benign(0.003) TCGA-BH-A18G-01 4 107092364 107092364 G A TBCK Missense_Mutation p.A708V 0.41 tolerated(0.66) benign(0.003) TCGA-BH-A18G-01 4 111539800 111539800 G A PITX2 Silent p.R152R 0.06 TCGA-BH-A18G-01 4 113539094 113539094 T C C4orf21 Missense_Mutation p.S702G 0.39 deleterious(0.04) benign(0.04) TCGA-BH-A18G-01 4 114223960 114223960 C T ANK2 Missense_Mutation p.T838M 0.36 probably_damaging(0.999) TCGA-BH-A18G-01 4 114680565 114680566 - C CAMK2D Frame_Shift_Ins p.A24Gfs*30 0.25 TCGA-BH-A18G-01 4 120422366 120422366 G A PDE5A Nonsense_Mutation p.Q817* 0.36 TCGA-BH-A18G-01 4 120460122 120460122 G A PDE5A Missense_Mutation p.S542L 0.37 tolerated(0.28) benign(0.001) TCGA-BH-A18G-01 4 122589485 122589485 G A ANXA5 3'UTR 0.37 TCGA-BH-A18G-01 4 140640638 140640638 G A MAML3 Missense_Mutation p.R1086W 0.44 possibly_damaging(0.893) TCGA-BH-A18G-01 4 146058514 146058514 T - OTUD4 3'UTR 0.67 TCGA-BH-A18G-01 4 15054153 15054153 A G CPEB2 Missense_Mutation p.I772M 0.05 tolerated_low_confidence(0.1) benign(0.403) TCGA-BH-A18G-01 4 152507927 152507929 GGA - FAM160A1 In_Frame_Del p.E290del 0.35 TCGA-BH-A18G-01 4 154542925 154542925 A G KIAA0922 Missense_Mutation p.I1261M 0.36 tolerated(0.29) benign(0.009) TCGA-BH-A18G-01 4 15482442 15482442 G T CC2D2A Missense_Mutation p.G80C 0.41 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-BH-A18G-01 4 155219190 155219190 T C DCHS2 Silent p.E1637E 0.34 TCGA-BH-A18G-01 4 155237076 155237076 A G DCHS2 Missense_Mutation p.L1240P 0.38 deleterious(0.02) probably_damaging(0.938) TCGA-BH-A18G-01 4 155410968 155410968 C T DCHS2 Missense_Mutation p.A514T 0.36 tolerated(0.14) benign(0.036) TCGA-BH-A18G-01 4 155533684 155533684 T C FGG Silent p.A26A 0.34 TCGA-BH-A18G-01 4 15689832 15689832 A - FAM200B Frame_Shift_Del p.K413Nfs*14 0.28 TCGA-BH-A18G-01 4 160252651 160252651 T A RAPGEF2 Silent p.T351T 0.29 TCGA-BH-A18G-01 4 162380399 162380399 A G FSTL5 Missense_Mutation p.W561R 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-BH-A18G-01 4 16258136 16258136 G A TAPT1-AS1 RNA 0.47 TCGA-BH-A18G-01 4 166418824 166418824 T - CPE 3'UTR 0.38 TCGA-BH-A18G-01 4 167022082 167022083 - T TLL1 3'UTR 0.33 TCGA-BH-A18G-01 4 184603899 184603899 T A TRAPPC11 Nonsense_Mutation p.Y376* 0.36 TCGA-BH-A18G-01 4 185309973 185309973 G A IRF2 Missense_Mutation p.T330I 0.39 deleterious(0.05) benign(0.049) TCGA-BH-A18G-01 4 1906107 1906107 T C WHSC1 Splice_Site p.X254_splice 0.38 TCGA-BH-A18G-01 4 2272281 2272281 T C ZFYVE28 3'UTR 0.29 TCGA-BH-A18G-01 4 2306975 2306975 A G ZFYVE28 Silent p.I364I 0.42 TCGA-BH-A18G-01 4 24542489 24542489 A G DHX15 Missense_Mutation p.V523A 0.08 deleterious(0.02) possibly_damaging(0.891) TCGA-BH-A18G-01 4 247819 247819 G A ZNF876P RNA 0.21 TCGA-BH-A18G-01 4 2940408 2940408 T - NOP14 3'UTR 0.39 TCGA-BH-A18G-01 4 2952780 2952780 A - NOP14 Intron 0.30 TCGA-BH-A18G-01 4 40778217 40778217 T C NSUN7 Missense_Mutation p.V326A 0.38 deleterious(0.02) benign(0.371) TCGA-BH-A18G-01 4 40892432 40892432 G A APBB2 Missense_Mutation p.S493L 0.43 deleterious(0.01) benign(0.226) TCGA-BH-A18G-01 4 4389431 4389431 T C NSG1 Silent p.I25I 0.31 TCGA-BH-A18G-01 4 4864437 4864437 G A MSX1 Missense_Mutation p.S160N 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-BH-A18G-01 4 56730508 56730508 G A EXOC1 Missense_Mutation p.R124Q 0.37 tolerated(0.57) benign(0.417) TCGA-BH-A18G-01 4 57217581 57217581 T C AASDH Missense_Mutation p.Y540C 0.33 deleterious(0.03) possibly_damaging(0.572) TCGA-BH-A18G-01 4 57686740 57686740 G T SPINK2 Missense_Mutation p.L21M 0.41 tolerated(0.27) unknown(0) TCGA-BH-A18G-01 4 679622 679622 A G MFSD7 Splice_Site p.X195_splice 0.06 TCGA-BH-A18G-01 4 69362561 69362562 - TTT TMPRSS11E 3'UTR 0.23 TCGA-BH-A18G-01 4 69962480 69962480 T C UGT2B7 Missense_Mutation p.L81S 0.39 tolerated(0.21) benign(0.152) TCGA-BH-A18G-01 4 71110584 71110584 T - CSN3 Frame_Shift_Del p.L18Wfs*52 0.33 TCGA-BH-A18G-01 4 71232426 71232426 A T SMR3A Silent p.P40P 0.33 TCGA-BH-A18G-01 4 71532314 71532314 A G IGJ 5'UTR 0.06 TCGA-BH-A18G-01 4 7435313 7435313 G A PSAPL1 Silent p.L432L 0.43 TCGA-BH-A18G-01 4 74608180 74608180 A - IL8 Frame_Shift_Del 0.30 TCGA-BH-A18G-01 4 75314847 75314847 A - AREG Frame_Shift_Del p.N133Mfs*30 0.31 TCGA-BH-A18G-01 4 77053844 77053844 G A NUP54 Missense_Mutation p.R247C 0.44 deleterious(0.05) benign(0.168) TCGA-BH-A18G-01 4 77247091 77247091 T C CCDC158 Missense_Mutation p.T1026A 0.36 tolerated(0.08) probably_damaging(0.979) TCGA-BH-A18G-01 4 7968787 7968787 C T ABLIM2 Missense_Mutation p.S623N 0.28 tolerated(0.09) benign(0.053) TCGA-BH-A18G-01 4 79847790 79847790 G A PAQR3 Missense_Mutation p.T196M 0.34 deleterious(0.03) possibly_damaging(0.714) TCGA-BH-A18G-01 4 79860369 79860369 T C PAQR3 Missense_Mutation p.K4E 0.23 deleterious_low_confidence(0.02) benign(0.275) TCGA-BH-A18G-01 4 7994611 7994611 C A ABLIM2 Missense_Mutation p.K554N 0.35 deleterious(0.02) benign(0.11) TCGA-BH-A18G-01 4 80329336 80329336 C T GK2 Missense_Mutation p.A7T 0.36 tolerated(0.33) benign(0.003) TCGA-BH-A18G-01 4 84350692 84350692 G A HELQ Missense_Mutation p.R835C 0.33 deleterious(0.02) benign(0.025) TCGA-BH-A18G-01 4 8609110 8609110 C - CPZ Frame_Shift_Del p.Q397Rfs*28 0.38 TCGA-BH-A18G-01 4 86852113 86852113 C T ARHGAP24 Intron 0.41 TCGA-BH-A18G-01 4 90844346 90844346 C T MMRN1 Missense_Mutation p.T293I 0.35 deleterious(0) benign(0.265) TCGA-BH-A18G-01 4 95173838 95173838 A - SMARCAD1 Frame_Shift_Del p.N322Mfs*7 0.29 TCGA-BH-A18G-01 5 10239183 10239183 C T FAM173B Missense_Mutation p.R101H 0.41 deleterious(0.03) possibly_damaging(0.751) TCGA-BH-A18G-01 5 10261709 10261709 G T CCT5 Missense_Mutation p.R344M 0.41 deleterious(0) probably_damaging(0.981) TCGA-BH-A18G-01 5 112176648 112176648 G T APC Missense_Mutation p.R1786M 0.47 probably_damaging(0.95) TCGA-BH-A18G-01 5 112362797 112362797 C T MCC 3'Flank 0.38 TCGA-BH-A18G-01 5 114860367 114860367 C A FEM1C Missense_Mutation p.G498W 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 5 121362853 121362853 A - SRFBP1 3'UTR 0.45 TCGA-BH-A18G-01 5 127507374 127507374 A G SLC12A2 Missense_Mutation p.I913M 0.42 tolerated(0.27) benign(0.142) TCGA-BH-A18G-01 5 13714559 13714559 A G DNAH5 Silent p.A4360A 0.38 TCGA-BH-A18G-01 5 13735431 13735431 C T DNAH5 Splice_Site p.X3857_splice 0.33 TCGA-BH-A18G-01 5 13871682 13871682 G T DNAH5 Missense_Mutation p.L1197M 0.12 possibly_damaging(0.665) TCGA-BH-A18G-01 5 139189067 139189067 C T PSD2 Silent p.G14G 0.32 TCGA-BH-A18G-01 5 139818109 139818109 T C ANKHD1 Missense_Mutation p.L175P 0.36 unknown(0) TCGA-BH-A18G-01 5 140166961 140166961 C T PCDHA1 Silent p.D362D 0.05 TCGA-BH-A18G-01 5 140222350 140222350 G A PCDHA8 Missense_Mutation p.A482T 0.44 deleterious_low_confidence(0.02) benign(0.09) TCGA-BH-A18G-01 5 140236951 140236951 G A PCDHA10 Missense_Mutation p.V440M 0.35 tolerated_low_confidence(0.07) possibly_damaging(0.647) TCGA-BH-A18G-01 5 140242315 140242315 G A AC005609.1 3'UTR 0.48 TCGA-BH-A18G-01 5 140242940 140242940 G A AC005609.1 Silent p.R12R 0.46 TCGA-BH-A18G-01 5 140558614 140558614 C T PCDHB8 Silent p.T333T 0.22 TCGA-BH-A18G-01 5 140588743 140588743 A G PCDHB12 Silent p.E88E 0.36 TCGA-BH-A18G-01 5 140711001 140711001 T C PCDHGA1 Silent p.N250N 0.48 TCGA-BH-A18G-01 5 140725634 140725634 C T PCDHGA3 Silent p.L678L 0.32 TCGA-BH-A18G-01 5 140866005 140866005 A G PCDHGC4 Missense_Mutation p.D422G 0.44 tolerated(0.14) benign(0.281) TCGA-BH-A18G-01 5 140870733 140870733 G A PCDHGC5 Silent p.Q642Q 0.39 TCGA-BH-A18G-01 5 141019879 141019879 G A FCHSD1 3'UTR 0.47 TCGA-BH-A18G-01 5 141024672 141024672 G A FCHSD1 Missense_Mutation p.T452M 0.32 deleterious(0.03) benign(0.411) TCGA-BH-A18G-01 5 141243711 141243711 G - PCDH1 Frame_Shift_Del p.Q729Rfs*24 0.35 TCGA-BH-A18G-01 5 142593593 142593593 G A ARHGAP26 Missense_Mutation p.A766T 0.39 tolerated(0.05) probably_damaging(0.95) TCGA-BH-A18G-01 5 147024496 147024496 C T JAKMIP2 Missense_Mutation p.A334T 0.03 tolerated(0.36) benign(0) TCGA-BH-A18G-01 5 148206709 148206709 G A ADRB2 Nonsense_Mutation p.W105* 0.35 TCGA-BH-A18G-01 5 150278031 150278031 C A ZNF300 Missense_Mutation p.R50M 0.36 deleterious(0) possibly_damaging(0.8) TCGA-BH-A18G-01 5 150672978 150672978 G A SLC36A3 Silent p.Y117Y 0.04 TCGA-BH-A18G-01 5 150696581 150696581 C T SLC36A2 Missense_Mutation p.A417T 0.40 tolerated(0.39) possibly_damaging(0.715) TCGA-BH-A18G-01 5 153078609 153078609 C T GRIA1 Silent p.G486G 0.35 TCGA-BH-A18G-01 5 154397234 154397234 A - KIF4B 3'UTR 0.23 TCGA-BH-A18G-01 5 15936680 15936680 C T FBXL7 Silent p.D287D 0.46 TCGA-BH-A18G-01 5 160047421 160047421 G A ATP10B Silent p.G783G 0.40 TCGA-BH-A18G-01 5 160067537 160067537 G A ATP10B Missense_Mutation p.R311W 0.37 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 5 16453127 16453127 C T ZNF622 Missense_Mutation p.S434N 0.42 tolerated(0.37) benign(0.206) TCGA-BH-A18G-01 5 16694613 16694614 - T MYO10 Frame_Shift_Ins p.G1223Rfs*28 0.30 TCGA-BH-A18G-01 5 16704732 16704732 G A MYO10 Silent p.H744H 0.41 TCGA-BH-A18G-01 5 167622300 167622300 C T TENM2 Missense_Mutation p.T967M 0.41 tolerated(0.41) benign(0.002) TCGA-BH-A18G-01 5 169664 169664 G A PLEKHG4B Missense_Mutation p.C873Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 5 172659767 172659767 G A NKX2-5 Silent p.G260G 0.44 TCGA-BH-A18G-01 5 175916028 175916028 G T FAF2 Missense_Mutation p.R115M 0.36 tolerated(0.08) benign(0.03) TCGA-BH-A18G-01 5 176863419 176863419 G A GRK6 Missense_Mutation p.R431H 0.41 deleterious(0.01) benign(0.013) TCGA-BH-A18G-01 5 176868899 176868899 G T GRK6 3'UTR 0.35 TCGA-BH-A18G-01 5 176885521 176885521 A G DBN1 Silent p.P440P 0.36 TCGA-BH-A18G-01 5 176951489 176951489 T C FAM193B Missense_Mutation p.K665E 0.31 deleterious(0) possibly_damaging(0.602) TCGA-BH-A18G-01 5 177642316 177642316 C A PHYKPL Missense_Mutation p.G348V 0.43 tolerated(0.09) benign(0.009) TCGA-BH-A18G-01 5 179271182 179271182 T C C5orf45 Silent p.G87G 0.34 TCGA-BH-A18G-01 5 180475112 180475112 G A BTNL9 Missense_Mutation p.A99T 0.34 deleterious(0.01) benign(0.077) TCGA-BH-A18G-01 5 24488214 24488214 G T CDH10 Missense_Mutation p.P642H 0.63 tolerated(0.3) probably_damaging(0.998) TCGA-BH-A18G-01 5 306729 306729 G - PDCD6 Frame_Shift_Del p.R74Lfs*7 0.30 TCGA-BH-A18G-01 5 32072367 32072367 A G PDZD2 Missense_Mutation p.H890R 0.40 tolerated(0.16) possibly_damaging(0.649) TCGA-BH-A18G-01 5 353994 353994 T C AHRR Missense_Mutation p.V75A 0.37 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 5 36677049 36677049 C T SLC1A3 Missense_Mutation p.T208M 0.45 deleterious(0.03) probably_damaging(0.946) TCGA-BH-A18G-01 5 36976367 36976367 T C NIPBL Missense_Mutation p.V453A 0.40 tolerated_low_confidence(0.28) benign(0.001) TCGA-BH-A18G-01 5 37244502 37244502 A G C5orf42 Missense_Mutation p.V182A 0.33 deleterious(0.04) possibly_damaging(0.716) TCGA-BH-A18G-01 5 37333695 37333695 G A NUP155 Missense_Mutation p.A463V 0.31 tolerated(0.19) benign(0.067) TCGA-BH-A18G-01 5 38481794 38481794 C T LIFR Missense_Mutation p.R1066Q 0.03 tolerated(0.09) probably_damaging(0.988) TCGA-BH-A18G-01 5 40681212 40681212 C T PTGER4 Silent p.I39I 0.06 TCGA-BH-A18G-01 5 41012725 41012725 A T MROH2B Missense_Mutation p.I1032N 0.28 deleterious(0.05) benign(0.003) TCGA-BH-A18G-01 5 43653200 43653200 T C NNT Silent p.N648N 0.38 TCGA-BH-A18G-01 5 54460122 54460122 T G GPX8 3'UTR 0.45 TCGA-BH-A18G-01 5 56160724 56160724 G T MAP3K1 Missense_Mutation p.S333I 0.33 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 5 61653537 61653537 G A KIF2A Missense_Mutation p.C225Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 5 639271 639271 C T CEP72 Missense_Mutation p.T425M 0.39 tolerated(0.11) benign(0.24) TCGA-BH-A18G-01 5 64100159 64100159 C T CWC27 Missense_Mutation p.A295V 0.36 tolerated(0.27) benign(0.003) TCGA-BH-A18G-01 5 68492902 68492902 A - CENPH Frame_Shift_Del p.N115Tfs*16 0.35 TCGA-BH-A18G-01 5 70845413 70845413 C T BDP1 Silent p.T2325T 0.34 TCGA-BH-A18G-01 5 74865213 74865213 A G POLK Missense_Mutation p.T102A 0.36 deleterious(0.03) benign(0.02) TCGA-BH-A18G-01 5 79473875 79473875 A - SERINC5 Frame_Shift_Del p.F69Lfs*40 0.31 TCGA-BH-A18G-01 5 79970915 79970915 A - MSH3 Frame_Shift_Del p.K383Rfs*32 0.40 TCGA-BH-A18G-01 5 85578465 85578465 T C NBPF22P RNA 0.07 TCGA-BH-A18G-01 5 896907 896907 C T TRIP13 Missense_Mutation p.A129V 0.34 deleterious(0.03) benign(0.064) TCGA-BH-A18G-01 5 89938470 89938470 A G GPR98 Missense_Mutation p.Q753R 0.34 benign(0.403) TCGA-BH-A18G-01 5 89943554 89943554 T - GPR98 Frame_Shift_Del p.Y1089Ifs*2 0.27 TCGA-BH-A18G-01 5 90024500 90024500 T G GPR98 Missense_Mutation p.N3392K 0.35 benign(0.027) TCGA-BH-A18G-01 5 93721962 93721962 T C KIAA0825 Missense_Mutation p.M1202V 0.36 tolerated(0.75) benign(0.019) TCGA-BH-A18G-01 5 94957230 94957230 C T GPR150 Silent p.R417R 0.55 TCGA-BH-A18G-01 6 100403852 100403852 T C MCHR2 Missense_Mutation p.T58A 0.38 tolerated(0.43) probably_damaging(0.981) TCGA-BH-A18G-01 6 105771556 105771556 T C PREP Missense_Mutation p.D434G 0.27 tolerated(0.29) benign(0.003) TCGA-BH-A18G-01 6 10626934 10626934 T C GCNT2 3'UTR 0.42 TCGA-BH-A18G-01 6 10731012 10731012 A - TMEM14C 3'UTR 0.28 TCGA-BH-A18G-01 6 109282824 109282824 G A ARMC2 Silent p.A655A 0.36 TCGA-BH-A18G-01 6 111498537 111498537 G A SLC16A10 Missense_Mutation p.G204D 0.30 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 6 111696541 111696541 A G REV3L Missense_Mutation p.L1006S 0.43 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 6 116264331 116264331 G A FRK Silent p.I386I 0.34 TCGA-BH-A18G-01 6 116442918 116442918 C A COL10A1 Nonsense_Mutation p.G121* 0.42 TCGA-BH-A18G-01 6 116833357 116833357 C T FAM26E Silent p.T166T 0.34 TCGA-BH-A18G-01 6 118596758 118596759 - T SLC35F1 Frame_Shift_Ins p.S261Qfs*11 0.31 TCGA-BH-A18G-01 6 124979370 124979370 C T NKAIN2 Silent p.H104H 0.05 TCGA-BH-A18G-01 6 126243864 126243864 C A NCOA7 Missense_Mutation p.P803T 0.37 deleterious(0) probably_damaging(0.914) TCGA-BH-A18G-01 6 127608398 127608398 C T RNF146 Missense_Mutation p.P214S 0.37 tolerated(0.69) benign(0.004) TCGA-BH-A18G-01 6 127608744 127608744 C T RNF146 Missense_Mutation p.S329L 0.44 tolerated_low_confidence(0.09) possibly_damaging(0.602) TCGA-BH-A18G-01 6 132054739 132054739 G A ENPP3 Silent p.S655S 0.40 TCGA-BH-A18G-01 6 132945414 132945414 T C TAAR2 Translation_Start_Site p.M1? 0.32 unknown(0) TCGA-BH-A18G-01 6 134301257 134301257 C T TBPL1 5'UTR 0.07 TCGA-BH-A18G-01 6 138619770 138619770 T A KIAA1244 Missense_Mutation p.S1226T 0.36 deleterious(0) probably_damaging(0.993) TCGA-BH-A18G-01 6 142630780 142630780 A G GPR126 Silent p.S34S 0.73 TCGA-BH-A18G-01 6 151161115 151161115 G A PLEKHG1 Missense_Mutation p.G1081R 0.72 deleterious(0) benign(0) TCGA-BH-A18G-01 6 157505482 157505482 A T ARID1B Nonsense_Mutation p.K1155* 0.77 TCGA-BH-A18G-01 6 158516726 158516726 C - SYNJ2 Frame_Shift_Del p.P1275Lfs*4 0.40 TCGA-BH-A18G-01 6 163987751 163987751 A G QKI Splice_Site p.X312_splice 0.71 TCGA-BH-A18G-01 6 168396595 168396595 T C KIF25 5'Flank 0.77 TCGA-BH-A18G-01 6 24580086 24580086 G A KIAA0319 Nonsense_Mutation p.Q458* 0.36 TCGA-BH-A18G-01 6 26443669 26443669 A C BTN3A3 Intron 0.40 TCGA-BH-A18G-01 6 28293971 28293971 T C ZSCAN31 Missense_Mutation p.Q398R 0.40 deleterious(0) possibly_damaging(0.843) TCGA-BH-A18G-01 6 28358850 28358850 C T ZSCAN12 Missense_Mutation p.G406E 0.43 tolerated(0.14) possibly_damaging(0.899) TCGA-BH-A18G-01 6 28540866 28540866 A - SCAND3 Frame_Shift_Del p.S934Qfs*17 0.30 TCGA-BH-A18G-01 6 28876593 28876593 T C TRIM27 Missense_Mutation p.K304R 0.40 tolerated(0.33) benign(0.003) TCGA-BH-A18G-01 6 2892088 2892088 G A SERPINB9 Silent p.D234D 0.42 TCGA-BH-A18G-01 6 30711813 30711813 G - IER3 Frame_Shift_Del p.P124Lfs*11 0.33 TCGA-BH-A18G-01 6 31477703 31477703 G A MICB 3'UTR 0.39 TCGA-BH-A18G-01 6 31743928 31743928 C T VWA7 Missense_Mutation p.R109H 0.46 deleterious(0.01) probably_damaging(0.984) TCGA-BH-A18G-01 6 32030217 32030217 A T TNXB Silent p.P2295P 0.29 TCGA-BH-A18G-01 6 33167141 33167141 A G RXRB Silent p.P96P 0.24 TCGA-BH-A18G-01 6 33283388 33283388 A G ZBTB22 Missense_Mutation p.S436P 0.05 deleterious(0.03) benign(0.04) TCGA-BH-A18G-01 6 33636888 33636888 C T ITPR3 Missense_Mutation p.A715V 0.06 deleterious(0.03) possibly_damaging(0.79) TCGA-BH-A18G-01 6 36179276 36179276 G - BRPF3 Frame_Shift_Del p.D809Mfs*51 0.28 TCGA-BH-A18G-01 6 37298829 37298829 A G TBC1D22B Missense_Mutation p.M467V 0.35 deleterious(0.02) benign(0.016) TCGA-BH-A18G-01 6 37606004 37606004 C T MDGA1 Missense_Mutation p.R918Q 0.04 tolerated(0.43) probably_damaging(0.992) TCGA-BH-A18G-01 6 37606043 37606043 G A MDGA1 Missense_Mutation p.A905V 0.36 deleterious(0) probably_damaging(0.994) TCGA-BH-A18G-01 6 37626113 37626113 C T MDGA1 Missense_Mutation p.R97H 0.33 tolerated(0.1) possibly_damaging(0.708) TCGA-BH-A18G-01 6 39855321 39855321 G A DAAM2 Silent p.S671S 0.35 TCGA-BH-A18G-01 6 41774522 41774522 A G USP49 Missense_Mutation p.M67T 0.31 deleterious(0) probably_damaging(0.974) TCGA-BH-A18G-01 6 42237123 42237123 A G TRERF1 Missense_Mutation p.V69A 0.04 tolerated_low_confidence(0.13) benign(0.082) TCGA-BH-A18G-01 6 42627561 42627562 - A UBR2 Frame_Shift_Ins p.N1139Kfs*4 0.29 TCGA-BH-A18G-01 6 42641867 42641867 T C UBR2 Missense_Mutation p.L1396P 0.36 deleterious(0) benign(0.013) TCGA-BH-A18G-01 6 43250508 43250508 G A TTBK1 Missense_Mutation p.R677Q 0.41 benign(0.421) TCGA-BH-A18G-01 6 43268964 43268964 C T SLC22A7 Missense_Mutation p.R307W 0.39 tolerated(0.08) benign(0.022) TCGA-BH-A18G-01 6 43416708 43416708 G A ABCC10 Missense_Mutation p.R1350K 0.38 tolerated(0.92) benign(0.006) TCGA-BH-A18G-01 6 44121411 44121411 A G TMEM63B Splice_Site p.X648_splice 0.38 TCGA-BH-A18G-01 6 46834803 46834803 G A GPR116 Silent p.L565L 0.34 TCGA-BH-A18G-01 6 49806200 49806200 G A CRISP1 Missense_Mutation p.T191I 0.36 tolerated(0.19) benign(0) TCGA-BH-A18G-01 6 51889528 51889528 C T PKHD1 Missense_Mutation p.G1694S 0.31 tolerated(0.13) benign(0.244) TCGA-BH-A18G-01 6 53519520 53519520 A G KLHL31 Missense_Mutation p.L184P 0.39 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 6 56354315 56354315 T C DST Silent p.K4327K 0.41 TCGA-BH-A18G-01 6 57017090 57017090 T C ZNF451 Missense_Mutation p.F942L 0.05 deleterious(0) probably_damaging(0.986) TCGA-BH-A18G-01 6 57037477 57037477 C T BAG2 5'UTR 0.41 TCGA-BH-A18G-01 6 63990012 63990012 G A LGSN Nonsense_Mutation p.R482* 0.35 TCGA-BH-A18G-01 6 70984477 70984477 T C COL9A1 Splice_Site p.X326_splice 0.37 TCGA-BH-A18G-01 6 71234312 71234312 T A FAM135A Missense_Mutation p.L509I 0.07 tolerated(0.28) benign(0.004) TCGA-BH-A18G-01 6 74104723 74104723 C T DDX43 Missense_Mutation p.A32V 0.36 deleterious_low_confidence(0.03) benign(0.01) TCGA-BH-A18G-01 6 79698060 79698060 C T PHIP Missense_Mutation p.A776T 0.38 tolerated(0.63) benign(0.001) TCGA-BH-A18G-01 6 83076032 83076032 C T TPBG 3'UTR 0.26 TCGA-BH-A18G-01 6 87993980 87993980 T - GJB7 Frame_Shift_Del p.K217Nfs*34 0.32 TCGA-BH-A18G-01 6 99849342 99849343 - T PNISR Frame_Shift_Ins p.E498Rfs*3 0.20 TCGA-BH-A18G-01 6 99885238 99885238 T C USP45 Missense_Mutation p.Y733C 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 7 100150976 100150976 C - AGFG2 Frame_Shift_Del p.P148Qfs*249 0.35 TCGA-BH-A18G-01 7 100345766 100345766 G A ZAN Missense_Mutation p.V344M 0.40 possibly_damaging(0.784) TCGA-BH-A18G-01 7 102852609 102852609 T - DPY19L2P2 Intron 0.30 TCGA-BH-A18G-01 7 104730706 104730706 G A KMT2E Missense_Mutation p.V537I 0.40 tolerated(1) benign(0.097) TCGA-BH-A18G-01 7 104801039 104801039 A G SRPK2 Missense_Mutation p.V179A 0.30 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 7 105279982 105279982 T C ATXN7L1 Silent p.V299V 0.05 TCGA-BH-A18G-01 7 106509620 106509620 G A PIK3CG Silent p.P538P 0.38 TCGA-BH-A18G-01 7 106840642 106840642 A G HBP1 Missense_Mutation p.M475V 0.31 deleterious(0) probably_damaging(0.976) TCGA-BH-A18G-01 7 107353039 107353039 C T SLC26A4 Missense_Mutation p.T764M 0.36 tolerated_low_confidence(0.27) benign(0.002) TCGA-BH-A18G-01 7 1097299 1097299 C T GPR146 Silent p.L50L 0.42 TCGA-BH-A18G-01 7 11022504 11022504 T C PHF14 Silent p.Y206Y 0.39 TCGA-BH-A18G-01 7 11075296 11075296 T C PHF14 Silent p.C495C 0.41 TCGA-BH-A18G-01 7 111423966 111423966 G A DOCK4 Silent p.G1148G 0.34 TCGA-BH-A18G-01 7 112097035 112097035 A G IFRD1 Silent p.E117E 0.39 TCGA-BH-A18G-01 7 11418873 11418873 T C THSD7A Missense_Mutation p.E1542G 0.37 deleterious(0) possibly_damaging(0.776) TCGA-BH-A18G-01 7 11501712 11501712 G A THSD7A Silent p.N809N 0.36 TCGA-BH-A18G-01 7 116166683 116166683 C T CAV1 Silent p.H45H 0.36 TCGA-BH-A18G-01 7 116776248 116776248 A G ST7 Missense_Mutation p.Q275R 0.37 tolerated(0.08) probably_damaging(0.994) TCGA-BH-A18G-01 7 117243699 117243699 A G CFTR Missense_Mutation p.D924G 0.35 tolerated(0.11) benign(0.073) TCGA-BH-A18G-01 7 120608111 120608111 T C ING3 Missense_Mutation p.M227T 0.04 tolerated(0.13) benign(0.049) TCGA-BH-A18G-01 7 126409995 126409995 G A GRM8 Silent p.Y427Y 0.39 TCGA-BH-A18G-01 7 127013702 127013702 T - ZNF800 Frame_Shift_Del p.K563Sfs*7 0.33 TCGA-BH-A18G-01 7 127670590 127670590 A G LRRC4 Missense_Mutation p.I35T 0.32 tolerated_low_confidence(0.51) benign(0) TCGA-BH-A18G-01 7 128315858 128315858 G A FAM71F2 Missense_Mutation p.G104S 0.31 deleterious(0.04) benign(0.139) TCGA-BH-A18G-01 7 128414670 128414670 G T OPN1SW Missense_Mutation p.T190N 0.30 deleterious(0) possibly_damaging(0.845) TCGA-BH-A18G-01 7 128483328 128483328 G A FLNC Missense_Mutation p.D866N 0.39 tolerated(0.1) probably_damaging(0.999) TCGA-BH-A18G-01 7 128645119 128645119 C T TNPO3 Missense_Mutation p.S216N 0.32 tolerated(0.52) benign(0.021) TCGA-BH-A18G-01 7 129474685 129474685 A - UBE2H 3'UTR 0.44 TCGA-BH-A18G-01 7 130040658 130040658 T - CEP41 Frame_Shift_Del p.N216Mfs*39 0.29 TCGA-BH-A18G-01 7 134719638 134719638 A G AGBL3 Silent p.E432E 0.10 TCGA-BH-A18G-01 7 134851534 134851534 G A C7orf49 Silent p.H101H 0.45 TCGA-BH-A18G-01 7 135098351 135098351 A G CNOT4 Silent p.G191G 0.04 TCGA-BH-A18G-01 7 137761198 137761198 C A AKR1D1 5'Flank 0.34 TCGA-BH-A18G-01 7 138764573 138764573 T G ZC3HAV1 Silent p.R372R 0.39 TCGA-BH-A18G-01 7 141629801 141629801 C T CLEC5A 3'UTR 0.21 TCGA-BH-A18G-01 7 141736699 141736699 C T MGAM Missense_Mutation p.T718I 0.03 deleterious(0) benign(0.274) TCGA-BH-A18G-01 7 143657730 143657730 T C OR2F1 Missense_Mutation p.S223P 0.33 tolerated(0.06) possibly_damaging(0.555) TCGA-BH-A18G-01 7 1484421 1484422 - G MICALL2 Frame_Shift_Ins p.G429Rfs*61 0.28 TCGA-BH-A18G-01 7 148767971 148767971 G A ZNF786 Silent p.R631R 0.38 TCGA-BH-A18G-01 7 149501110 149501110 G - SSPO RNA 0.39 TCGA-BH-A18G-01 7 150069011 150069011 C T REPIN1 Silent p.P284P 0.44 TCGA-BH-A18G-01 7 150704222 150704222 A G NOS3 Missense_Mutation p.Y657C 0.40 deleterious(0) possibly_damaging(0.77) TCGA-BH-A18G-01 7 150772561 150772561 G A SLC4A2 Silent p.Q1089Q 0.42 TCGA-BH-A18G-01 7 150774223 150774223 A G FASTK Silent p.A464A 0.31 TCGA-BH-A18G-01 7 151962198 151962198 C T KMT2C Missense_Mutation p.C370Y 0.05 probably_damaging(0.999) TCGA-BH-A18G-01 7 155094121 155094121 T A INSIG1 Missense_Mutation p.V233D 0.03 deleterious(0) probably_damaging(0.992) TCGA-BH-A18G-01 7 15652091 15652091 G A MEOX2 Missense_Mutation p.T279I 0.42 tolerated_low_confidence(0.1) benign(0.013) TCGA-BH-A18G-01 7 156799232 156799232 A G MNX1 Missense_Mutation p.Y265H 0.51 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 7 157046647 157046647 G T UBE3C Splice_Site p.X899_splice 0.41 TCGA-BH-A18G-01 7 1785499 1785499 C A ELFN1 Missense_Mutation p.L423M 0.44 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 7 19812245 19812245 G A TMEM196 Silent p.S25S 0.50 TCGA-BH-A18G-01 7 21840868 21840868 C T DNAH11 Silent p.N3387N 0.34 TCGA-BH-A18G-01 7 23213695 23213695 A G KLHL7 Silent p.P513P 0.07 TCGA-BH-A18G-01 7 2472871 2472871 G A CHST12 Silent p.P199P 0.56 TCGA-BH-A18G-01 7 30092435 30092435 T C PLEKHA8 Missense_Mutation p.I250T 0.39 tolerated(0.65) benign(0) TCGA-BH-A18G-01 7 31016142 31016143 - C GHRHR Frame_Shift_Ins p.L360Pfs*27 0.37 TCGA-BH-A18G-01 7 34977706 34977706 T C DPY19L1 Missense_Mutation p.M591V 0.36 tolerated(0.38) benign(0.023) TCGA-BH-A18G-01 7 40117689 40117689 T C CDK13 Missense_Mutation p.Y956H 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-BH-A18G-01 7 44619119 44619119 G A TMED4 Missense_Mutation p.R215C 0.38 deleterious(0) probably_damaging(0.932) TCGA-BH-A18G-01 7 47408858 47408858 A G TNS3 Missense_Mutation p.V462A 0.06 deleterious(0) possibly_damaging(0.744) TCGA-BH-A18G-01 7 47409181 47409181 G A TNS3 Silent p.Y354Y 0.05 TCGA-BH-A18G-01 7 48016405 48016405 C T HUS1 Silent p.V129V 0.38 TCGA-BH-A18G-01 7 48099950 48099950 T - C7orf57 3'UTR 0.39 TCGA-BH-A18G-01 7 48142985 48142985 G A UPP1 Missense_Mutation p.R138H 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 7 48313381 48313381 G A ABCA13 Missense_Mutation p.R1373H 0.43 benign(0.001) TCGA-BH-A18G-01 7 48626866 48626866 A G ABCA13 Silent p.K4874K 0.43 TCGA-BH-A18G-01 7 6204474 6204474 G A CYTH3 3'UTR 0.31 TCGA-BH-A18G-01 7 64437629 64437629 T - ZNF117 3'UTR 0.32 TCGA-BH-A18G-01 7 70886069 70886069 G A WBSCR17 Missense_Mutation p.G314R 0.42 tolerated(0.23) probably_damaging(1) TCGA-BH-A18G-01 7 72419418 72419418 G A POM121 3'UTR 0.09 TCGA-BH-A18G-01 7 72907202 72907202 T - BAZ1B Frame_Shift_Del p.G208Efs*17 0.31 TCGA-BH-A18G-01 7 73245959 73245959 T C CLDN4 Missense_Mutation p.I143T 0.31 deleterious(0.03) benign(0.091) TCGA-BH-A18G-01 7 74212596 74212596 G A GTF2IRD2 Missense_Mutation p.R419C 0.26 deleterious(0) probably_damaging(0.994) TCGA-BH-A18G-01 7 76144472 76144472 C T UPK3B Silent p.A289A 0.32 TCGA-BH-A18G-01 7 82997142 82997142 A G SEMA3E Silent p.C696C 0.42 TCGA-BH-A18G-01 7 86415801 86415801 G A GRM3 Silent p.E231E 0.41 TCGA-BH-A18G-01 7 86569340 86569340 T - KIAA1324L Frame_Shift_Del p.N278Ifs*47 0.37 TCGA-BH-A18G-01 7 87051504 87051504 T C ABCB4 Missense_Mutation p.K750R 0.34 tolerated(0.36) benign(0.02) TCGA-BH-A18G-01 7 87092221 87092221 G A ABCB4 Nonsense_Mutation p.R47* 0.37 TCGA-BH-A18G-01 7 89929202 89929202 A G C7orf63 Missense_Mutation p.N627D 0.47 deleterious(0.03) possibly_damaging(0.447) TCGA-BH-A18G-01 7 90585032 90585032 G A CDK14 Missense_Mutation p.V265I 0.03 tolerated(0.76) benign(0.021) TCGA-BH-A18G-01 7 92129118 92129118 T C PEX1 Missense_Mutation p.Q873R 0.36 tolerated(0.25) benign(0.002) TCGA-BH-A18G-01 7 92844822 92844822 T C HEPACAM2 Missense_Mutation p.T203A 0.06 tolerated(0.07) benign(0.015) TCGA-BH-A18G-01 7 95657552 95657552 G A DYNC1I1 Silent p.S362S 0.35 TCGA-BH-A18G-01 7 97851805 97851805 T C TECPR1 Missense_Mutation p.D986G 0.39 deleterious(0) probably_damaging(0.963) TCGA-BH-A18G-01 7 99091111 99091111 C G ZNF394 3'UTR 0.45 TCGA-BH-A18G-01 7 99097511 99097511 T G ZNF394 Missense_Mutation p.Q69P 0.36 deleterious(0.01) probably_damaging(0.926) TCGA-BH-A18G-01 7 99912208 99912208 A C SPDYE3 Silent p.R346R 0.66 TCGA-BH-A18G-01 8 101016189 101016189 T C RGS22 Silent p.E864E 0.04 TCGA-BH-A18G-01 8 10388838 10388838 C T PRSS55 Silent p.N127N 0.39 TCGA-BH-A18G-01 8 10465065 10465065 C A RP1L1 Missense_Mutation p.E2181D 0.37 unknown(0) TCGA-BH-A18G-01 8 10555231 10555231 T C C8orf74 Missense_Mutation p.Y122H 0.36 tolerated(0.06) benign(0.117) TCGA-BH-A18G-01 8 106431430 106431430 C T ZFPM2 Silent p.D33D 0.06 TCGA-BH-A18G-01 8 107782441 107782441 C T ABRA 5'UTR 0.30 TCGA-BH-A18G-01 8 110342077 110342077 A G NUDCD1 Intron 0.30 TCGA-BH-A18G-01 8 110346160 110346163 AGAG - NUDCD1 Frame_Shift_Del p.S26Lfs*18 0.35 TCGA-BH-A18G-01 8 110980363 110980363 T C KCNV1 Missense_Mutation p.E486G 0.36 deleterious(0.04) possibly_damaging(0.749) TCGA-BH-A18G-01 8 124710747 124710747 G A ANXA13 Missense_Mutation p.A121V 0.37 tolerated(0.8) benign(0.006) TCGA-BH-A18G-01 8 125029876 125029876 T C FER1L6 Missense_Mutation p.I644T 0.37 tolerated(0.06) benign(0.185) TCGA-BH-A18G-01 8 139838991 139838991 G A COL22A1 Silent p.Y293Y 0.25 TCGA-BH-A18G-01 8 142229023 142229023 G A SLC45A4 Missense_Mutation p.A188V 0.26 tolerated(0.05) benign(0.442) TCGA-BH-A18G-01 8 144461121 144461121 C A RHPN1 Silent p.A208A 0.32 TCGA-BH-A18G-01 8 144885935 144885935 C T SCRIB Missense_Mutation p.R1099Q 0.36 benign(0.092) TCGA-BH-A18G-01 8 144993423 144993423 C T PLEC Silent p.T3659T 0.40 TCGA-BH-A18G-01 8 145009185 145009185 C A PLEC Missense_Mutation p.R410S 0.40 unknown(0) TCGA-BH-A18G-01 8 145024703 145024703 G A PLEC Missense_Mutation p.R58W 0.37 unknown(0) TCGA-BH-A18G-01 8 145580146 145580146 G A FBXL6 Nonsense_Mutation p.R347* 0.49 TCGA-BH-A18G-01 8 145657806 145657806 G A TONSL Silent p.N1199N 0.26 TCGA-BH-A18G-01 8 145748042 145748042 G - LRRC24 Frame_Shift_Del p.C454Vfs*6 0.37 TCGA-BH-A18G-01 8 145999360 145999360 T C ZNF34 Missense_Mutation p.H325R 0.32 deleterious(0) probably_damaging(0.995) TCGA-BH-A18G-01 8 146156722 146156722 G A ZNF16 Missense_Mutation p.T484M 0.35 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 8 22137059 22137059 C T PIWIL2 Missense_Mutation p.P54S 0.29 tolerated_low_confidence(0.19) benign(0.003) TCGA-BH-A18G-01 8 22675167 22675167 G A PEBP4 Silent p.L114L 0.39 TCGA-BH-A18G-01 8 23708938 23708938 T C STC1 Missense_Mutation p.E123G 0.34 deleterious(0) possibly_damaging(0.575) TCGA-BH-A18G-01 8 24262916 24262916 T G ADAMDEC1 3'UTR 0.35 TCGA-BH-A18G-01 8 26365050 26365050 G A PNMA2 3'UTR 0.43 TCGA-BH-A18G-01 8 27296898 27296898 G T PTK2B Missense_Mutation p.S606I 0.43 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 8 27767201 27767201 G T SCARA5 Missense_Mutation p.P326T 0.37 deleterious(0.01) possibly_damaging(0.866) TCGA-BH-A18G-01 8 28218426 28218426 C T ZNF395 Silent p.Q72Q 0.38 TCGA-BH-A18G-01 8 30977830 30977830 T C WRN Silent p.G840G 0.29 TCGA-BH-A18G-01 8 37555555 37555555 C A ZNF703 Missense_Mutation p.P379H 0.19 deleterious(0) possibly_damaging(0.886) TCGA-BH-A18G-01 8 37555557 37555557 T A ZNF703 Missense_Mutation p.Y380N 0.20 deleterious(0) benign(0.09) TCGA-BH-A18G-01 8 37611457 37611457 C T ERLIN2 Nonsense_Mutation p.Q282* 0.43 TCGA-BH-A18G-01 8 37735176 37735176 A G RAB11FIP1 Intron 0.28 TCGA-BH-A18G-01 8 37823790 37823790 C T ADRB3 Silent p.P66P 0.36 TCGA-BH-A18G-01 8 38034577 38034577 G A BAG4 Missense_Mutation p.G64R 0.31 deleterious_low_confidence(0.02) probably_damaging(0.973) TCGA-BH-A18G-01 8 38133120 38133120 C T WHSC1L1 3'UTR 0.33 TCGA-BH-A18G-01 8 41791871 41791873 CTC - KAT6A In_Frame_Del p.E1289del 0.45 TCGA-BH-A18G-01 8 42294888 42294888 C T SLC20A2 Missense_Mutation p.R381H 0.40 deleterious(0) probably_damaging(0.99) TCGA-BH-A18G-01 8 48353052 48353052 G A SPIDR Missense_Mutation p.A349T 0.40 deleterious(0) probably_damaging(0.974) TCGA-BH-A18G-01 8 59058872 59058872 G A FAM110B Missense_Mutation p.R28H 0.12 deleterious(0) probably_damaging(0.997) TCGA-BH-A18G-01 8 67476876 67476876 T C MYBL1 3'UTR 0.06 TCGA-BH-A18G-01 8 68137173 68137173 A G ARFGEF1 Silent p.C1391C 0.38 TCGA-BH-A18G-01 8 75233198 75233198 T C JPH1 Missense_Mutation p.T109A 0.10 deleterious(0) possibly_damaging(0.497) TCGA-BH-A18G-01 8 88885903 88885903 G A DCAF4L2 Silent p.Y99Y 0.32 TCGA-BH-A18G-01 8 92972427 92972427 C T RUNX1T1 3'UTR 0.44 TCGA-BH-A18G-01 8 94740529 94740529 A G FAM92A1 3'UTR 0.35 TCGA-BH-A18G-01 9 100328235 100328235 T C TMOD1 Missense_Mutation p.Y242H 0.04 tolerated(0.54) benign(0.002) TCGA-BH-A18G-01 9 104124794 104124794 G A BAAT Silent p.H391H 0.07 TCGA-BH-A18G-01 9 104375759 104375759 C T GRIN3A Missense_Mutation p.E889K 0.40 deleterious(0.04) benign(0.348) TCGA-BH-A18G-01 9 107580945 107580945 T - ABCA1 Frame_Shift_Del p.K1154Rfs*23 0.32 TCGA-BH-A18G-01 9 108061534 108061534 C T SLC44A1 Missense_Mutation p.R24C 0.31 deleterious(0) possibly_damaging(0.863) TCGA-BH-A18G-01 9 116083833 116083833 C G WDR31 Missense_Mutation p.R199T 0.41 tolerated(0.28) benign(0.054) TCGA-BH-A18G-01 9 119737556 119737556 T C ASTN2 Missense_Mutation p.E556G 0.30 deleterious(0.02) unknown(0) TCGA-BH-A18G-01 9 123930433 123930433 A G CNTRL Silent p.K1968K 0.36 TCGA-BH-A18G-01 9 124530894 124530894 C G DAB2IP Silent p.A599A 0.33 TCGA-BH-A18G-01 9 124584995 124584995 C T TTLL11 Silent p.S758S 0.34 TCGA-BH-A18G-01 9 127214789 127214789 C - GPR144 Frame_Shift_Del p.V44Wfs*7 0.43 TCGA-BH-A18G-01 9 128201231 128201232 - T MAPKAP1 Frame_Shift_Ins p.Q502Tfs*44 0.31 TCGA-BH-A18G-01 9 130440790 130440790 G A STXBP1 Silent p.P480P 0.34 TCGA-BH-A18G-01 9 131454972 131454972 G A SET Silent p.E115E 0.04 TCGA-BH-A18G-01 9 131752485 131752485 C T NUP188 Silent p.L874L 0.29 TCGA-BH-A18G-01 9 132637681 132637681 G A USP20 Missense_Mutation p.R714H 0.31 deleterious(0) probably_damaging(0.956) TCGA-BH-A18G-01 9 132889808 132889808 A G GPR107 Missense_Mutation p.K516R 0.02 tolerated(0.23) benign(0.139) TCGA-BH-A18G-01 9 133799261 133799261 C T FIBCD1 Missense_Mutation p.R240Q 0.32 tolerated(0.11) benign(0.292) TCGA-BH-A18G-01 9 134183534 134183534 G T PPAPDC3 Missense_Mutation p.G226C 0.54 tolerated(0.05) probably_damaging(0.997) TCGA-BH-A18G-01 9 134390889 134390890 - C POMT1 Frame_Shift_Ins p.Q441Pfs*14 0.37 TCGA-BH-A18G-01 9 135937369 135937369 A G CEL 5'UTR 0.30 TCGA-BH-A18G-01 9 135946038 135946038 A - CEL Frame_Shift_Del p.T497Qfs*37 0.11 TCGA-BH-A18G-01 9 135961837 135961837 A - CELP RNA 0.40 TCGA-BH-A18G-01 9 137005008 137005010 GGA - WDR5 In_Frame_Del p.E5del 0.41 TCGA-BH-A18G-01 9 137702110 137702110 G A COL5A1 Missense_Mutation p.G1162R 0.41 unknown(0) TCGA-BH-A18G-01 9 138395417 138395417 G A MRPS2 Missense_Mutation p.R110H 0.45 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 9 138649006 138649006 A T KCNT1 Missense_Mutation p.N202I 0.44 deleterious(0) possibly_damaging(0.775) TCGA-BH-A18G-01 9 138719421 138719421 A G CAMSAP1 Missense_Mutation p.V352A 0.37 tolerated(0.27) benign(0.005) TCGA-BH-A18G-01 9 139275774 139275774 C A SNAPC4 Missense_Mutation p.Q796H 0.31 deleterious(0) probably_damaging(0.998) TCGA-BH-A18G-01 9 139277851 139277851 C T SNAPC4 Nonsense_Mutation p.W590* 0.80 TCGA-BH-A18G-01 9 139393655 139393655 C T NOTCH1 Silent p.T1997T 0.39 TCGA-BH-A18G-01 9 139617773 139617773 C T FAM69B Silent p.F281F 0.40 TCGA-BH-A18G-01 9 139642980 139642980 C A LCN6 5'UTR 0.43 TCGA-BH-A18G-01 9 139720235 139720235 G A RABL6 Silent p.T90T 0.40 TCGA-BH-A18G-01 9 139874487 139874487 G A PTGDS Missense_Mutation p.E141K 0.45 tolerated(0.32) benign(0.035) TCGA-BH-A18G-01 9 140638409 140638409 T C EHMT1 Missense_Mutation p.M346T 0.29 tolerated_low_confidence(0.11) benign(0.034) TCGA-BH-A18G-01 9 140919538 140919538 T C CACNA1B Missense_Mutation p.M1067T 0.44 tolerated(0.76) benign(0.023) TCGA-BH-A18G-01 9 14784458 14784458 G A FREM1 Missense_Mutation p.P1451L 0.41 tolerated(0.05) possibly_damaging(0.461) TCGA-BH-A18G-01 9 14806728 14806730 GAG - FREM1 In_Frame_Del p.P1068del 0.46 TCGA-BH-A18G-01 9 18905886 18905886 C T ADAMTSL1 Missense_Mutation p.P1653L 0.07 deleterious(0.04) benign(0.217) TCGA-BH-A18G-01 9 20789382 20789382 T C FOCAD Silent p.S410S 0.35 TCGA-BH-A18G-01 9 20982378 20982378 T A FOCAD Missense_Mutation p.I1554N 0.36 deleterious(0) possibly_damaging(0.588) TCGA-BH-A18G-01 9 27018673 27018673 G A IFT74 Missense_Mutation p.S321N 0.04 deleterious(0.04) benign(0.014) TCGA-BH-A18G-01 9 32633699 32633699 C T TAF1L Missense_Mutation p.G627R 0.38 deleterious(0) probably_damaging(0.978) TCGA-BH-A18G-01 9 33364762 33364762 C T NFX1 Missense_Mutation p.A1010V 0.05 tolerated(0.1) possibly_damaging(0.877) TCGA-BH-A18G-01 9 33797968 33797968 C A PRSS3 Silent p.S171S 0.34 TCGA-BH-A18G-01 9 34257623 34257623 T - KIF24 Frame_Shift_Del p.K661Sfs*34 0.35 TCGA-BH-A18G-01 9 34728071 34728071 G A FAM205A Missense_Mutation p.R67C 0.36 tolerated(0.24) benign(0) TCGA-BH-A18G-01 9 35043030 35043030 C T C9orf131 Missense_Mutation p.A135V 0.34 tolerated(0.08) benign(0.168) TCGA-BH-A18G-01 9 35739062 35739062 T C GBA2 Missense_Mutation p.M578V 0.06 tolerated(0.05) benign(0.261) TCGA-BH-A18G-01 9 36353283 36353283 G A RNF38 Missense_Mutation p.L319F 0.38 tolerated(0.58) possibly_damaging(0.512) TCGA-BH-A18G-01 9 5335193 5335194 - A RLN1 3'UTR 0.28 TCGA-BH-A18G-01 9 6558604 6558604 C A GLDC Missense_Mutation p.E669D 0.34 tolerated(0.32) benign(0.034) TCGA-BH-A18G-01 9 70871838 70871838 T C CBWD3 Silent p.G144G 0.18 TCGA-BH-A18G-01 9 72459539 72459539 C A C9orf135 Missense_Mutation p.P87T 0.40 tolerated(0.27) possibly_damaging(0.586) TCGA-BH-A18G-01 9 75542080 75542080 A - ALDH1A1 Frame_Shift_Del p.F152Lfs*29 0.25 TCGA-BH-A18G-01 9 79321057 79321057 G A PRUNE2 Nonsense_Mutation p.R2045* 0.41 TCGA-BH-A18G-01 9 79984308 79984308 T - VPS13A Frame_Shift_Del p.Y2885Mfs*20 0.29 TCGA-BH-A18G-01 9 80858512 80858512 T C CEP78 Silent p.C246C 0.34 TCGA-BH-A18G-01 9 8507409 8507409 T C PTPRD Silent p.K523K 0.37 TCGA-BH-A18G-01 9 91963111 91963111 G A SECISBP2 Missense_Mutation p.E574K 0.06 tolerated(0.7) benign(0.002) TCGA-BH-A18G-01 9 91979058 91979058 G A SECISBP2 3'Flank 0.33 TCGA-BH-A18G-01 9 92002462 92002462 G A SEMA4D Missense_Mutation p.T390M 0.40 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 9 92220171 92220171 G T GADD45G Intron 0.42 TCGA-BH-A18G-01 9 92220726 92220726 G A GADD45G Silent p.R100R 0.43 TCGA-BH-A18G-01 9 94843197 94843197 G A SPTLC1 Silent p.F103F 0.32 TCGA-BH-A18G-01 9 95888858 95888858 G A NINJ1 Silent p.S46S 0.32 TCGA-BH-A18G-01 9 96294530 96294530 T C FAM120A Missense_Mutation p.Y610H 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 X 10106783 10106783 G A WWC3 Missense_Mutation p.R964H 0.37 deleterious(0) probably_damaging(0.987) TCGA-BH-A18G-01 X 101572186 101572186 T - NXF2 Intron 0.19 TCGA-BH-A18G-01 X 102565667 102565667 G - BEX2 5'UTR 0.44 TCGA-BH-A18G-01 X 103268148 103268148 T C H2BFWT Missense_Mutation p.M29V 0.08 tolerated(0.09) probably_damaging(0.914) TCGA-BH-A18G-01 X 106871763 106871763 C T PRPS1 5'UTR 0.51 TCGA-BH-A18G-01 X 107935990 107935990 G A COL4A5 Missense_Mutation p.S1514N 0.40 probably_damaging(0.997) TCGA-BH-A18G-01 X 110574209 110574209 G A DCX Missense_Mutation p.P371L 0.36 tolerated(0.18) benign(0.005) TCGA-BH-A18G-01 X 11160421 11160421 T A ARHGAP6 Missense_Mutation p.E730V 0.38 deleterious(0) possibly_damaging(0.905) TCGA-BH-A18G-01 X 112048215 112048215 A G AMOT Missense_Mutation p.L579P 0.39 unknown(0) TCGA-BH-A18G-01 X 11308542 11308542 T C ARHGAP6 Intron 0.39 TCGA-BH-A18G-01 X 114424802 114424802 C T RBMXL3 Silent p.H266H 0.43 TCGA-BH-A18G-01 X 114871268 114871268 A G PLS3 Missense_Mutation p.N290S 0.41 tolerated(0.54) benign(0) TCGA-BH-A18G-01 X 119037309 119037309 A G AKAP14 Silent p.L41L 0.44 TCGA-BH-A18G-01 X 119037607 119037607 T C AKAP14 Intron 0.36 TCGA-BH-A18G-01 X 119249600 119249600 T C RHOXF1 Missense_Mutation p.N58S 0.33 tolerated(0.22) benign(0.008) TCGA-BH-A18G-01 X 119402096 119402096 T C TMEM255A Intron 0.35 TCGA-BH-A18G-01 X 119410840 119410840 A T TMEM255A Missense_Mutation p.I216N 0.35 deleterious(0) probably_damaging(0.958) TCGA-BH-A18G-01 X 119500623 119500623 G A ATP1B4 Missense_Mutation p.A103T 0.30 deleterious(0) possibly_damaging(0.854) TCGA-BH-A18G-01 X 120008753 120008753 C T CT47B1 Missense_Mutation p.E258K 0.36 tolerated(0.32) unknown(0) TCGA-BH-A18G-01 X 129171439 129171439 G T BCORL1 Missense_Mutation p.W1468L 0.38 probably_damaging(0.997) TCGA-BH-A18G-01 X 129535943 129535943 G A RBMX2 5'UTR 0.29 TCGA-BH-A18G-01 X 129769040 129769040 T C ENOX2 Missense_Mutation p.Y475C 0.03 tolerated(0.17) benign(0.004) TCGA-BH-A18G-01 X 130222619 130222619 G A ARHGAP36 Missense_Mutation p.A502T 0.34 tolerated(0.39) benign(0.003) TCGA-BH-A18G-01 X 131214255 131214255 T C FRMD7 Silent p.K315K 0.40 TCGA-BH-A18G-01 X 131762231 131762231 T C HS6ST2 3'UTR 0.38 TCGA-BH-A18G-01 X 132091143 132091143 C T HS6ST2 Missense_Mutation p.D214N 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.877) TCGA-BH-A18G-01 X 134155955 134155955 C T FAM127C 3'UTR 0.10 TCGA-BH-A18G-01 X 134683685 134683685 G C DDX26B Missense_Mutation p.W287C 0.36 deleterious(0) probably_damaging(0.985) TCGA-BH-A18G-01 X 134713877 134713877 A C DDX26B Missense_Mutation p.S725R 0.37 tolerated(0.61) benign(0) TCGA-BH-A18G-01 X 148037681 148037681 G T AFF2 Missense_Mutation p.K702N 0.42 deleterious(0) possibly_damaging(0.658) TCGA-BH-A18G-01 X 14863040 14863040 A - FANCB Frame_Shift_Del p.L622* 0.27 TCGA-BH-A18G-01 X 149638928 149638928 C - MAMLD1 Frame_Shift_Del p.Q338Rfs*29 0.31 TCGA-BH-A18G-01 X 152159203 152159203 A G PNMA5 Missense_Mutation p.C314R 0.35 tolerated(0.83) benign(0.036) TCGA-BH-A18G-01 X 152967532 152967532 G A BCAP31 Missense_Mutation p.A278V 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-BH-A18G-01 X 153073863 153073863 G A PDZD4 Missense_Mutation p.A83V 0.41 deleterious(0.02) benign(0.368) TCGA-BH-A18G-01 X 153184655 153184655 G A ARHGAP4 Missense_Mutation p.A295V 0.38 deleterious(0) possibly_damaging(0.548) TCGA-BH-A18G-01 X 153218311 153218311 G A HCFC1 Silent p.A1532A 0.24 TCGA-BH-A18G-01 X 153222966 153222966 C T HCFC1 Missense_Mutation p.A718T 0.46 deleterious(0.03) probably_damaging(0.991) TCGA-BH-A18G-01 X 153553734 153553734 C A TKTL1 Missense_Mutation p.T456N 0.41 tolerated(0.59) benign(0.002) TCGA-BH-A18G-01 X 153676842 153676842 G A FAM50A Silent p.T151T 0.38 TCGA-BH-A18G-01 X 153688844 153688844 C T PLXNA3 Silent p.R107R 0.40 TCGA-BH-A18G-01 X 1536899 1536900 - G ASMTL Frame_Shift_Ins p.G497Rfs*13 0.39 TCGA-BH-A18G-01 X 153691977 153691977 C T PLXNA3 Silent p.C497C 0.40 TCGA-BH-A18G-01 X 153699600 153699600 C T PLXNA3 Missense_Mutation p.S1770L 0.33 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 X 15376312 15376312 A G FIGF Missense_Mutation p.I102T 0.03 deleterious(0.03) probably_damaging(0.994) TCGA-BH-A18G-01 X 18239021 18239021 A C BEND2 5'Flank 0.19 TCGA-BH-A18G-01 X 19554335 19554335 G A SH3KBP1 3'UTR 0.30 TCGA-BH-A18G-01 X 21900733 21900733 C T MBTPS2 Missense_Mutation p.A507V 0.37 tolerated(0.27) benign(0.194) TCGA-BH-A18G-01 X 3228563 3228563 T C MXRA5 Missense_Mutation p.S2561G 0.23 deleterious(0.04) possibly_damaging(0.507) TCGA-BH-A18G-01 X 34148936 34148936 C T FAM47A Missense_Mutation p.R487Q 0.41 tolerated(0.38) possibly_damaging(0.572) TCGA-BH-A18G-01 X 39913235 39913235 T C BCOR Missense_Mutation p.D1627G 0.36 deleterious(0.05) benign(0.04) TCGA-BH-A18G-01 X 41055854 41055855 AG - USP9X Frame_Shift_Del p.R1368Sfs*2 0.42 TCGA-BH-A18G-01 X 41555260 41555260 T A GPR34 Missense_Mutation p.I125N 0.36 deleterious(0) possibly_damaging(0.653) TCGA-BH-A18G-01 X 44942009 44942009 A G KDM6A Missense_Mutation p.N1087D 0.38 deleterious(0) possibly_damaging(0.833) TCGA-BH-A18G-01 X 44949997 44949997 T C KDM6A Missense_Mutation p.Y1256H 0.32 deleterious(0) probably_damaging(0.977) TCGA-BH-A18G-01 X 46359776 46359776 A G ZNF674 Silent p.S416S 0.03 TCGA-BH-A18G-01 X 47070300 47070300 C A UBA1 Silent p.T753T 0.34 TCGA-BH-A18G-01 X 48678572 48678572 G - HDAC6 Frame_Shift_Del p.G751Afs*16 0.36 TCGA-BH-A18G-01 X 48825564 48825564 G A KCND1 Missense_Mutation p.T372M 0.36 deleterious(0) probably_damaging(0.988) TCGA-BH-A18G-01 X 48841790 48841790 A G GRIPAP1 Missense_Mutation p.L356P 0.04 possibly_damaging(0.61) TCGA-BH-A18G-01 X 48849847 48849847 G A GRIPAP1 Silent p.N150N 0.37 TCGA-BH-A18G-01 X 48921410 48921410 C - CCDC120 Frame_Shift_Del p.P69Lfs*5 0.41 TCGA-BH-A18G-01 X 48933619 48933620 - G WDR45 Intron 0.26 TCGA-BH-A18G-01 X 49021636 49021636 C T MAGIX Missense_Mutation p.R206C 0.39 tolerated(0.24) benign(0.009) TCGA-BH-A18G-01 X 49029797 49029797 T C PLP2 Silent p.V104V 0.38 TCGA-BH-A18G-01 X 49030743 49030743 G A PLP2 Missense_Mutation p.R136Q 0.04 tolerated(0.33) benign(0.232) TCGA-BH-A18G-01 X 49034493 49034493 G A PRICKLE3 Silent p.G268G 0.47 TCGA-BH-A18G-01 X 49088141 49088141 T C CACNA1F Missense_Mutation p.K92E 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A18G-01 X 50659354 50659354 T C BMP15 Missense_Mutation p.I309T 0.07 deleterious(0) probably_damaging(0.939) TCGA-BH-A18G-01 X 51488002 51488002 T C GSPT2 Missense_Mutation p.I427T 0.41 tolerated(0.39) benign(0.005) TCGA-BH-A18G-01 X 53114014 53114014 G C TSPYL2 Missense_Mutation p.M321I 0.37 tolerated(0.11) possibly_damaging(0.831) TCGA-BH-A18G-01 X 53223476 53223476 C G KDM5C Missense_Mutation p.A1295P 0.54 deleterious(0.01) possibly_damaging(0.555) TCGA-BH-A18G-01 X 53223478 53223478 T A KDM5C Missense_Mutation p.Q1294L 0.53 deleterious(0) benign(0.199) TCGA-BH-A18G-01 X 53409442 53409442 G A SMC1A Silent p.R1090R 0.41 TCGA-BH-A18G-01 X 53616683 53616683 C T HUWE1 Missense_Mutation p.D1429N 0.38 benign(0.093) TCGA-BH-A18G-01 X 54472832 54472832 G A FGD1 Missense_Mutation p.R866C 0.41 tolerated(0.11) probably_damaging(0.994) TCGA-BH-A18G-01 X 54574764 54574764 C T GNL3L Missense_Mutation p.R245C 0.33 deleterious(0.04) benign(0.011) TCGA-BH-A18G-01 X 54948666 54948666 G A TRO 5'UTR 0.40 TCGA-BH-A18G-01 X 63444082 63444082 T C ASB12 3'UTR 0.33 TCGA-BH-A18G-01 X 63579391 63579391 A G MTMR8 Missense_Mutation p.L14S 0.40 deleterious(0.01) benign(0.261) TCGA-BH-A18G-01 X 64708751 64708751 C T ZC3H12B Missense_Mutation p.P24S 0.05 tolerated(0.2) benign(0.001) TCGA-BH-A18G-01 X 64722831 64722831 C T ZC3H12B Silent p.L751L 0.37 TCGA-BH-A18G-01 X 65409533 65409533 T C HEPH Silent p.N326N 0.33 TCGA-BH-A18G-01 X 69495968 69495968 G A ARR3 Missense_Mutation p.R61H 0.31 deleterious(0.05) benign(0.001) TCGA-BH-A18G-01 X 69503424 69503424 C T RAB41 Silent p.D134D 0.35 TCGA-BH-A18G-01 X 70375090 70375090 G A NLGN3 Missense_Mutation p.V202I 0.39 deleterious(0) possibly_damaging(0.884) TCGA-BH-A18G-01 X 71359752 71359752 G T NHSL2 Missense_Mutation p.G785V 0.29 deleterious(0.01) probably_damaging(0.927) TCGA-BH-A18G-01 X 71933881 71933881 G A PHKA1 5'UTR 0.50 TCGA-BH-A18G-01 X 73965463 73965463 G A KIAA2022 Missense_Mutation p.A8V 0.05 tolerated_low_confidence(0.16) benign(0.003) TCGA-BH-A18G-01 X 76939579 76939579 C T ATRX Missense_Mutation p.R390H 0.38 probably_damaging(0.996) TCGA-BH-A18G-01 X 76939856 76939858 TCT - ATRX In_Frame_Del p.K297del 0.35 TCGA-BH-A18G-01 X 77245410 77245410 T C ATP7A Missense_Mutation p.L431S 0.37 deleterious(0) probably_damaging(1) TCGA-BH-A18G-01 X 77528736 77528736 T C CYSLTR1 Missense_Mutation p.N170D 0.47 tolerated(0.18) benign(0.266) TCGA-BH-A18G-01 X 77529168 77529168 A G CYSLTR1 Missense_Mutation p.Y26H 0.41 deleterious(0) probably_damaging(0.996) TCGA-BH-A18G-01 X 82763664 82763664 C T POU3F4 Missense_Mutation p.P111L 0.30 tolerated(0.06) benign(0.101) TCGA-BH-A18G-01 X 82764178 82764178 G A POU3F4 Silent p.R282R 0.35 TCGA-BH-A18G-01 X 84362646 84362646 T C SATL1 Silent p.Q443Q 0.05 TCGA-BH-A18G-01 X 91873397 91873397 G A PCDH11X Missense_Mutation p.A1168T 0.37 tolerated_low_confidence(0.38) benign(0.002) TCGA-BH-A18G-01 X 9863012 9863012 C T SHROOM2 Missense_Mutation p.A355V 0.48 tolerated(0.33) benign(0.001) TCGA-BH-A18G-01 X 9900561 9900561 G T SHROOM2 Missense_Mutation p.G1080C 0.34 deleterious(0.03) benign(0.105) TCGA-BH-A18G-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.31 TCGA-BH-A18H-01 11 20486016 20486016 G A PRMT3 Missense_Mutation p.C424Y 0.11 probably_damaging(0.945) TCGA-BH-A18H-01 11 20982027 20982027 C A NELL1 Nonsense_Mutation p.C407* 0.10 TCGA-BH-A18H-01 11 4593466 4593466 G C C11orf40 Missense_Mutation p.L123V 0.13 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-BH-A18H-01 11 64111763 64111763 G A CCDC88B Missense_Mutation p.E584K 0.17 tolerated_low_confidence(0.06) benign(0.007) TCGA-BH-A18H-01 11 66613002 66613002 T G RCE1 Silent p.G241G 0.37 TCGA-BH-A18H-01 11 75133746 75133746 C T KLHL35 Missense_Mutation p.E544K 0.12 deleterious(0.01) unknown(0) TCGA-BH-A18H-01 11 82536048 82536048 G A PRCP Missense_Mutation p.A485V 0.22 deleterious(0.04) benign(0.014) TCGA-BH-A18H-01 12 102295079 102295079 G A DRAM1 Silent p.T70T 0.25 TCGA-BH-A18H-01 12 125396396 125396396 T G UBC Missense_Mutation p.K641T 0.06 deleterious(0.01) benign(0.41) TCGA-BH-A18H-01 12 55794894 55794894 G A OR6C65 Silent p.E194E 0.22 TCGA-BH-A18H-01 12 58176980 58176980 C T TSFM Missense_Mutation p.L49F 0.07 tolerated(0.18) probably_damaging(0.972) TCGA-BH-A18H-01 12 9230409 9230409 T C A2M Missense_Mutation p.Y1055C 0.16 deleterious(0) possibly_damaging(0.591) TCGA-BH-A18H-01 13 111371763 111371763 C G ING1 Missense_Mutation p.S251R 0.12 deleterious(0.03) probably_damaging(0.985) TCGA-BH-A18H-01 15 38614571 38614571 G A SPRED1 Missense_Mutation p.D113N 0.12 deleterious(0) probably_damaging(0.979) TCGA-BH-A18H-01 15 41687218 41687219 AA - NDUFAF1 Frame_Shift_Del p.Y200Rfs*38 0.20 TCGA-BH-A18H-01 15 49309150 49309150 G A SECISBP2L Silent p.T438T 0.12 TCGA-BH-A18H-01 15 59191874 59191874 G A SLTM Silent p.D284D 0.10 TCGA-BH-A18H-01 15 96869370 96869370 T C NR2F2 5'Flank 0.19 TCGA-BH-A18H-01 15 99486242 99486242 C T IGF1R Missense_Mutation p.S1183F 0.02 deleterious(0) probably_damaging(1) TCGA-BH-A18H-01 16 31393187 31393187 G A ITGAX Missense_Mutation p.E1151K 0.22 tolerated(0.19) benign(0.156) TCGA-BH-A18H-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.26 TCGA-BH-A18H-01 17 81006543 81006543 A G B3GNTL1 Splice_Site p.X59_splice 0.09 TCGA-BH-A18H-01 19 23159642 23159646 CTTAT - ZNF728 Frame_Shift_Del p.I165Afs*10 0.11 TCGA-BH-A18H-01 19 53793366 53793366 C G BIRC8 Missense_Mutation p.E88Q 0.18 tolerated(0.13) benign(0.007) TCGA-BH-A18H-01 19 56538775 56538775 C A NLRP5 Silent p.R392R 0.06 TCGA-BH-A18H-01 19 58579519 58579519 G A ZNF135 Missense_Mutation p.G580D 0.09 deleterious(0) probably_damaging(0.973) TCGA-BH-A18H-01 1 157650538 157650538 C T FCRL3 Silent p.P660P 0.13 TCGA-BH-A18H-01 1 158637659 158637659 G T SPTA1 Missense_Mutation p.T676K 0.15 deleterious(0) probably_damaging(0.925) TCGA-BH-A18H-01 1 158687552 158687552 C T OR6K3 Missense_Mutation p.M118I 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18H-01 1 16262615 16262615 C T SPEN Nonsense_Mutation p.Q3294* 0.19 TCGA-BH-A18H-01 1 19559537 19559537 C T EMC1 Missense_Mutation p.A509T 0.13 tolerated(0.08) possibly_damaging(0.864) TCGA-BH-A18H-01 1 205899028 205899028 T C SLC26A9 Missense_Mutation p.I237V 0.11 tolerated(0.39) possibly_damaging(0.585) TCGA-BH-A18H-01 1 41945043 41945043 G A EDN2 3'UTR 0.14 TCGA-BH-A18H-01 20 30064203 30064203 T A REM1 5'UTR 0.33 TCGA-BH-A18H-01 2 238303252 238303252 C T COL6A3 Silent p.T229T 0.25 TCGA-BH-A18H-01 3 120114668 120114668 G A FSTL1 3'UTR 0.09 TCGA-BH-A18H-01 3 120114669 120114669 A G FSTL1 3'UTR 0.11 TCGA-BH-A18H-01 3 178952054 178952054 G A PIK3CA Missense_Mutation p.E1037K 0.23 tolerated(0.43) benign(0.005) TCGA-BH-A18H-01 3 38406703 38406703 T C XYLB Missense_Mutation p.I102T 0.08 deleterious(0) benign(0.063) TCGA-BH-A18H-01 3 50679183 50679183 C A MAPKAPK3 Missense_Mutation p.D135E 0.12 tolerated(0.2) benign(0.005) TCGA-BH-A18H-01 3 9803438 9803438 C T CAMK1 Missense_Mutation p.E145K 0.17 deleterious(0.03) possibly_damaging(0.838) TCGA-BH-A18H-01 4 53729470 53729470 G A RASL11B Missense_Mutation p.G60S 0.07 deleterious(0.01) possibly_damaging(0.818) TCGA-BH-A18H-01 4 79396611 79396611 G A FRAS1 Missense_Mutation p.A2568T 0.19 possibly_damaging(0.72) TCGA-BH-A18H-01 4 83375938 83375938 C G ENOPH1 Missense_Mutation p.I151M 0.18 deleterious(0.04) possibly_damaging(0.59) TCGA-BH-A18H-01 5 167674674 167674674 A G TENM2 Missense_Mutation p.M2244V 0.05 deleterious(0.04) benign(0.01) TCGA-BH-A18H-01 6 146276233 146276233 C G SHPRH Missense_Mutation p.V76L 0.12 tolerated_low_confidence(0.27) benign(0) TCGA-BH-A18H-01 6 16147039 16147039 A T MYLIP 3'UTR 0.10 TCGA-BH-A18H-01 6 46801035 46801035 C T MEP1A Missense_Mutation p.P457S 0.22 deleterious(0) probably_damaging(0.943) TCGA-BH-A18H-01 9 130502055 130502055 G A SH2D3C Silent p.H771H 0.11 TCGA-BH-A18H-01 9 131587316 131587316 C T C9orf114 Missense_Mutation p.D218N 0.20 tolerated(0.07) possibly_damaging(0.534) TCGA-BH-A18H-01 9 138523281 138523281 G A GLT6D1 Missense_Mutation p.P39S 0.04 tolerated(0.08) possibly_damaging(0.856) TCGA-BH-A18H-01 9 96051418 96051418 A C WNK2 Missense_Mutation p.E1498A 0.50 unknown(0) TCGA-BH-A18H-01 X 101858006 101858006 G C ARMCX5 Missense_Mutation p.D313H 0.06 deleterious(0) probably_damaging(1) TCGA-BH-A18H-01 X 134185352 134185352 T G FAM127B 3'UTR 0.04 TCGA-BH-A18H-01 X 135126700 135126700 T A SLC9A6 Silent p.T641T 0.18 TCGA-BH-A18H-01 X 32717338 32717338 T C DMD Missense_Mutation p.Q241R 0.13 possibly_damaging(0.571) TCGA-BH-A18I-01 11 1977619 1977619 G A MRPL23 Missense_Mutation p.R144Q 0.42 deleterious(0.04) benign(0.223) TCGA-BH-A18I-01 12 121712041 121712041 G A CAMKK2 Missense_Mutation p.R97C 0.48 deleterious_low_confidence(0.01) benign(0.021) TCGA-BH-A18I-01 12 49525157 49525157 G A TUBA1B 5'UTR 0.35 TCGA-BH-A18I-01 12 56082679 56082679 G A ITGA7 Silent p.R973R 0.06 TCGA-BH-A18I-01 13 96529583 96529583 C G UGGT2 Missense_Mutation p.W1141C 0.31 deleterious(0) probably_damaging(0.999) TCGA-BH-A18I-01 15 25947227 25947227 G A ATP10A Missense_Mutation p.R866C 0.39 deleterious(0) possibly_damaging(0.773) TCGA-BH-A18I-01 15 43814174 43814174 G A MAP1A Missense_Mutation p.R168H 0.33 probably_damaging(0.997) TCGA-BH-A18I-01 15 72192139 72192139 A G MYO9A Missense_Mutation p.I1120T 0.33 tolerated(0.85) benign(0.001) TCGA-BH-A18I-01 16 3611738 3611738 C T NLRC3 Silent p.V707V 0.57 TCGA-BH-A18I-01 18 13059100 13059100 G A CEP192 Missense_Mutation p.R1426H 0.43 tolerated(0.16) benign(0.007) TCGA-BH-A18I-01 18 61390554 61390554 C T SERPINB11 Missense_Mutation p.A367V 0.31 deleterious(0.03) probably_damaging(0.923) TCGA-BH-A18I-01 19 12175583 12175583 C T ZNF844 5'UTR 0.09 TCGA-BH-A18I-01 19 42599576 42599576 G A POU2F2 Silent p.A331A 0.17 TCGA-BH-A18I-01 19 55264067 55264067 C A KIR2DL3 3'UTR 0.05 TCGA-BH-A18I-01 1 156499903 156499903 C T IQGAP3 Silent p.L1466L 0.40 TCGA-BH-A18I-01 1 206669699 206669699 C T IKBKE 3'UTR 0.56 TCGA-BH-A18I-01 1 27210723 27210723 A T GPN2 Missense_Mutation p.F263Y 0.31 tolerated(0.12) benign(0.217) TCGA-BH-A18I-01 21 33974379 33974397 TCCCTGCCCTCTAGGAGCA - C21orf59 Intron 0.40 TCGA-BH-A18I-01 21 45999779 45999779 C T KRTAP10-5 Missense_Mutation p.R226H 0.32 tolerated(0.1) benign(0.334) TCGA-BH-A18I-01 2 125547610 125547610 A T CNTNAP5 Missense_Mutation p.S961C 0.20 deleterious(0) probably_damaging(0.954) TCGA-BH-A18I-01 2 131796570 131796570 G A ARHGEF4 Missense_Mutation p.D238N 0.44 deleterious(0) probably_damaging(0.986) TCGA-BH-A18I-01 2 136570313 136570313 A - LCT Frame_Shift_Del p.Y641Tfs*5 0.39 TCGA-BH-A18I-01 3 165504044 165504044 C A BCHE Nonsense_Mutation p.E525* 0.36 TCGA-BH-A18I-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.30 deleterious(0.04) probably_damaging(0.96) TCGA-BH-A18I-01 3 93617309 93617309 C G PROS1 Missense_Mutation p.D278H 0.04 deleterious(0) probably_damaging(0.95) TCGA-BH-A18I-01 4 144360988 144360988 G A GAB1 Missense_Mutation p.R410Q 0.32 tolerated(0.32) possibly_damaging(0.843) TCGA-BH-A18I-01 5 140710391 140710391 A G PCDHGA1 Missense_Mutation p.N47S 0.32 tolerated_low_confidence(0.05) benign(0.07) TCGA-BH-A18I-01 5 140788500 140788500 G A PCDHGB6 Missense_Mutation p.R244K 0.31 tolerated(0.13) benign(0.001) TCGA-BH-A18I-01 5 176860631 176860631 C T GRK6 Missense_Mutation p.A231V 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-BH-A18I-01 5 86564540 86564560 CTGCTGCTGGCGTAGCTGGTG - RASA1 In_Frame_Del p.A100_A106del 0.25 TCGA-BH-A18I-01 6 105198288 105198288 G A HACE1 Silent p.I757I 0.51 TCGA-BH-A18I-01 7 8099816 8099816 A G GLCCI1 Missense_Mutation p.I302V 0.33 deleterious(0.05) benign(0.028) TCGA-BH-A18I-01 8 28827654 28827654 A - HMBOX1 Frame_Shift_Del p.K40Nfs*117 0.29 TCGA-BH-A18I-01 8 33424275 33424275 G - RNF122 5'UTR 0.66 TCGA-BH-A18I-01 8 77775608 77775609 - A ZFHX4 Frame_Shift_Ins p.I3222Nfs*14 0.41 TCGA-BH-A18I-01 8 81399482 81399482 C T ZBTB10 Missense_Mutation p.S146L 0.16 tolerated_low_confidence(0.11) benign(0.254) TCGA-BH-A18I-01 X 75392807 75392807 C T PBDC1 5'UTR 0.30 TCGA-BH-A18J-01 10 117075136 117075136 C T ATRNL1 Missense_Mutation p.S976F 0.21 deleterious(0.02) probably_damaging(1) TCGA-BH-A18J-01 11 124954753 124954753 G C SLC37A2 Silent p.G386G 0.36 TCGA-BH-A18J-01 11 22271833 22271833 A T ANO5 Missense_Mutation p.Y310F 0.25 deleterious(0.02) benign(0.065) TCGA-BH-A18J-01 11 3707308 3707308 G A NUP98 Missense_Mutation p.S1524L 0.12 tolerated(0.07) benign(0.004) TCGA-BH-A18J-01 11 56185603 56185603 G C OR5R1 Missense_Mutation p.L36V 0.03 tolerated(0.26) benign(0.002) TCGA-BH-A18J-01 11 58949648 58949648 G A DTX4 Silent p.V216V 0.23 TCGA-BH-A18J-01 11 67077640 67077640 G C SSH3 Missense_Mutation p.E505Q 0.18 tolerated(0.14) benign(0.079) TCGA-BH-A18J-01 11 78380135 78380135 G A TENM4 Nonsense_Mutation p.R2419* 0.11 TCGA-BH-A18J-01 12 122295684 122295684 G C HPD Missense_Mutation p.F24L 0.04 tolerated(0.18) possibly_damaging(0.573) TCGA-BH-A18J-01 12 122985417 122985417 G A ZCCHC8 5'UTR 0.29 TCGA-BH-A18J-01 12 39947821 39947821 G A ABCD2 Nonsense_Mutation p.Q706* 0.26 TCGA-BH-A18J-01 12 44914000 44914000 C G NELL2 Missense_Mutation p.D780H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BH-A18J-01 12 49431434 49431434 C G KMT2D Missense_Mutation p.K3235N 0.24 probably_damaging(0.991) TCGA-BH-A18J-01 12 51566260 51566260 G A TFCP2 5'UTR 0.30 TCGA-BH-A18J-01 12 56718085 56718085 C A PAN2 Nonsense_Mutation p.G641* 0.19 TCGA-BH-A18J-01 13 21620312 21620312 T C LATS2 5'UTR 0.28 TCGA-BH-A18J-01 13 21732146 21732146 G C SKA3 Missense_Mutation p.S345C 0.03 deleterious(0) probably_damaging(0.971) TCGA-BH-A18J-01 13 30782854 30782854 C G KATNAL1 Missense_Mutation p.M432I 0.05 deleterious(0) possibly_damaging(0.611) TCGA-BH-A18J-01 13 46050340 46050340 C T COG3 Missense_Mutation p.P60L 0.24 deleterious(0.01) probably_damaging(0.974) TCGA-BH-A18J-01 13 93879647 93879647 G A GPC6 5'UTR 0.30 TCGA-BH-A18J-01 13 94958240 94958240 C T GPC6 Nonsense_Mutation p.Q339* 0.08 TCGA-BH-A18J-01 14 39717240 39717240 C G MIA2 Missense_Mutation p.Q488E 0.25 tolerated(1) benign(0.008) TCGA-BH-A18J-01 15 87531306 87531306 C T AGBL1 Silent p.L1058L 0.21 TCGA-BH-A18J-01 16 2029831 2029831 C T NOXO1 Silent p.P225P 0.32 TCGA-BH-A18J-01 16 2548280 2548280 C A TBC1D24 Nonsense_Mutation p.S342* 0.26 TCGA-BH-A18J-01 16 7568188 7568188 C A RBFOX1 Missense_Mutation p.Q43K 0.29 deleterious(0) probably_damaging(0.989) TCGA-BH-A18J-01 17 20319802 20319802 C G SRP68P3 Intron 0.20 TCGA-BH-A18J-01 17 53342935 53342935 G A HLF Silent p.L30L 0.27 TCGA-BH-A18J-01 17 65909295 65909295 C A BPTF Silent p.I1765I 0.35 TCGA-BH-A18J-01 17 80788525 80788525 C T ZNF750 Silent p.V555V 0.24 TCGA-BH-A18J-01 18 31320321 31320321 G A ASXL3 Missense_Mutation p.D985N 0.24 probably_damaging(0.962) TCGA-BH-A18J-01 18 52899811 52899811 C T TCF4 Silent p.T628T 0.28 TCGA-BH-A18J-01 19 13941785 13941785 C T ZSWIM4 Missense_Mutation p.S964L 0.19 deleterious(0.01) unknown(0) TCGA-BH-A18J-01 19 23299816 23299816 G A ZNF730 5'UTR 0.27 TCGA-BH-A18J-01 19 36322218 36322218 G A NPHS1 Missense_Mutation p.R1123W 0.23 tolerated(0.05) possibly_damaging(0.513) TCGA-BH-A18J-01 19 57876384 57876384 G C TRAPPC2P1 Missense_Mutation p.L61F 0.28 deleterious(0) probably_damaging(0.999) TCGA-BH-A18J-01 19 58385255 58385255 G C ZNF814 Missense_Mutation p.F501L 0.03 tolerated(0.06) probably_damaging(0.97) TCGA-BH-A18J-01 1 152283409 152283409 C G FLG Missense_Mutation p.S1318T 0.03 benign(0.153) TCGA-BH-A18J-01 1 206589281 206589281 C T SRGAP2 Silent p.L377L 0.10 TCGA-BH-A18J-01 1 234519488 234519488 G A COA6 Missense_Mutation p.R101K 0.24 tolerated(0.53) probably_damaging(0.999) TCGA-BH-A18J-01 1 40703390 40703390 G A RLF Missense_Mutation p.E1006K 0.36 tolerated(1) benign(0.014) TCGA-BH-A18J-01 1 78381798 78381798 G A NEXN Missense_Mutation p.D3N 0.15 deleterious_low_confidence(0) possibly_damaging(0.753) TCGA-BH-A18J-01 21 10907035 10907035 T G TPTE Missense_Mutation p.Y509S 0.05 deleterious(0.05) benign(0.219) TCGA-BH-A18J-01 21 33038816 33038816 C T SOD1 Missense_Mutation p.P75L 0.07 deleterious(0) probably_damaging(1) TCGA-BH-A18J-01 22 37902202 37902202 G A CARD10 Silent p.L460L 0.30 TCGA-BH-A18J-01 2 102957169 102957169 C T IL1RL1 Missense_Mutation p.S164L 0.05 tolerated(0.09) possibly_damaging(0.507) TCGA-BH-A18J-01 2 108499150 108499150 G A RGPD4 Missense_Mutation p.R1696K 0.04 deleterious_low_confidence(0) benign(0.067) TCGA-BH-A18J-01 2 128399741 128399741 C A LIMS2 Missense_Mutation p.K205N 0.29 tolerated(0.14) possibly_damaging(0.736) TCGA-BH-A18J-01 2 160688210 160688210 G A LY75-CD302 Missense_Mutation p.S1310L 0.04 tolerated(0.32) probably_damaging(0.943) TCGA-BH-A18J-01 2 166859083 166859083 C T SCN1A Missense_Mutation p.D1395N 0.27 tolerated(0.08) benign(0.027) TCGA-BH-A18J-01 2 170366577 170366577 G C KLHL41 Missense_Mutation p.D97H 0.22 deleterious(0.04) probably_damaging(0.957) TCGA-BH-A18J-01 2 190332237 190332237 C T WDR75 Silent p.H497H 0.05 TCGA-BH-A18J-01 2 197002043 197002043 C T STK17B 3'UTR 0.31 TCGA-BH-A18J-01 2 198570604 198570604 C T MARS2 Silent p.L159L 0.29 TCGA-BH-A18J-01 2 207027604 207027604 C G EEF1B2 Missense_Mutation p.I225M 0.32 deleterious(0) probably_damaging(0.997) TCGA-BH-A18J-01 2 212285290 212285290 A G ERBB4 Missense_Mutation p.F1004S 0.09 deleterious(0.01) possibly_damaging(0.772) TCGA-BH-A18J-01 2 25471111 25471111 T G DNMT3A Missense_Mutation p.K217T 0.19 deleterious(0.03) benign(0.419) TCGA-BH-A18J-01 2 48668100 48668100 C A PPP1R21 Nonsense_Mutation p.S3* 0.24 TCGA-BH-A18J-01 2 68607462 68607462 G C PLEK Silent p.G15G 0.22 TCGA-BH-A18J-01 2 68804999 68804999 G A APLF Missense_Mutation p.E461K 0.27 deleterious(0.03) possibly_damaging(0.907) TCGA-BH-A18J-01 2 77745603 77745603 C G LRRTM4 Missense_Mutation p.K464N 0.03 tolerated(0.1) possibly_damaging(0.859) TCGA-BH-A18J-01 3 118865111 118865111 C T C3orf30 Silent p.G25G 0.24 TCGA-BH-A18J-01 3 14551332 14551332 C T GRIP2 RNA 0.14 TCGA-BH-A18J-01 3 158369888 158369888 G A GFM1 Silent p.Q231Q 0.05 TCGA-BH-A18J-01 3 169539890 169539890 G A LRRIQ4 Missense_Mutation p.E61K 0.19 tolerated(0.85) benign(0.081) TCGA-BH-A18J-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A18J-01 3 9959575 9959575 G A IL17RC Intron 0.32 TCGA-BH-A18J-01 4 141446688 141446688 G A ELMOD2 Missense_Mutation p.D36N 0.37 tolerated(0.81) benign(0.218) TCGA-BH-A18J-01 4 20541118 20541118 C T SLIT2 Silent p.L629L 0.22 TCGA-BH-A18J-01 4 42145827 42145827 C G BEND4 Missense_Mutation p.Q224H 0.26 tolerated_low_confidence(0.09) benign(0.004) TCGA-BH-A18J-01 5 112770420 112770420 C T TSSK1B Silent p.A39A 0.31 TCGA-BH-A18J-01 5 113831863 113831863 C T KCNN2 Missense_Mutation p.S575L 0.31 tolerated_low_confidence(0.11) unknown(0) TCGA-BH-A18J-01 5 133643965 133643965 T G CDKL3 Missense_Mutation p.N410H 0.10 tolerated(0.15) benign(0.013) TCGA-BH-A18J-01 5 137621494 137621494 G T CDC25C Missense_Mutation p.H437N 0.21 deleterious(0) probably_damaging(0.976) TCGA-BH-A18J-01 5 140625159 140625159 G A PCDHB15 Missense_Mutation p.G5R 0.24 tolerated_low_confidence(0.59) benign(0.03) TCGA-BH-A18J-01 5 16673826 16673842 TGCAGGAGCCGCCGCCA - MYO10 Frame_Shift_Del p.H1707Qfs*34 0.38 TCGA-BH-A18J-01 5 179676088 179676088 G A MAPK9 Silent p.I167I 0.19 TCGA-BH-A18J-01 5 231050 231050 C T SDHA Missense_Mutation p.T277M 0.14 tolerated_low_confidence(0.37) possibly_damaging(0.712) TCGA-BH-A18J-01 5 43644857 43644857 G C NNT Missense_Mutation p.D415H 0.22 deleterious(0.01) possibly_damaging(0.673) TCGA-BH-A18J-01 5 63621163 63621163 C A RNF180 Missense_Mutation p.L460M 0.29 deleterious(0) probably_damaging(0.961) TCGA-BH-A18J-01 5 74491586 74491586 A G ANKRD31 Missense_Mutation p.L296S 0.05 tolerated(0.07) benign(0.243) TCGA-BH-A18J-01 5 9154769 9154769 G A SEMA5A Nonsense_Mutation p.Q438* 0.20 TCGA-BH-A18J-01 5 96503693 96503693 C T RIOK2 Missense_Mutation p.R292K 0.13 tolerated(0.17) benign(0.013) TCGA-BH-A18J-01 6 107391941 107391941 C A BEND3 Missense_Mutation p.V152L 0.26 tolerated_low_confidence(0.41) benign(0.005) TCGA-BH-A18J-01 6 117622168 117622168 G T ROS1 Missense_Mutation p.N2234K 0.21 tolerated(0.92) benign(0.002) TCGA-BH-A18J-01 6 18121699 18121699 A G NHLRC1 Missense_Mutation p.L380P 0.32 deleterious(0) probably_damaging(0.994) TCGA-BH-A18J-01 6 26373171 26373171 G C BTN3A2 Silent p.G254G 0.26 TCGA-BH-A18J-01 6 28120897 28120897 A T ZKSCAN8 Missense_Mutation p.Q280L 0.25 tolerated(0.3) benign(0.26) TCGA-BH-A18J-01 6 35825081 35825081 G C SRPK1 Missense_Mutation p.S526C 0.21 deleterious(0.05) probably_damaging(0.969) TCGA-BH-A18J-01 6 36882057 36882057 C T C6orf89 Intron 0.26 TCGA-BH-A18J-01 6 99936655 99936655 C T USP45 Missense_Mutation p.E174K 0.22 tolerated(0.13) benign(0.056) TCGA-BH-A18J-01 7 102106615 102106615 G A LRWD1 Silent p.L110L 0.07 TCGA-BH-A18J-01 7 102952858 102952858 C A PMPCB 3'UTR 0.18 TCGA-BH-A18J-01 7 105673252 105673252 C T CDHR3 3'UTR 0.22 TCGA-BH-A18J-01 7 128036670 128036670 G A IMPDH1 Silent p.I415I 0.19 TCGA-BH-A18J-01 7 151970850 151970850 G C KMT2C Missense_Mutation p.Q318E 0.03 possibly_damaging(0.717) TCGA-BH-A18J-01 7 20371365 20371365 G C ITGB8 5'UTR 0.25 TCGA-BH-A18J-01 7 5410036 5410036 C G TNRC18 Missense_Mutation p.E1397Q 0.20 probably_damaging(0.997) TCGA-BH-A18J-01 7 99091324 99091324 C T ZNF394 Missense_Mutation p.R505H 0.24 deleterious(0.04) possibly_damaging(0.703) TCGA-BH-A18J-01 8 120608116 120608116 G A ENPP2 Missense_Mutation p.H367Y 0.20 tolerated_low_confidence(0.07) benign(0.083) TCGA-BH-A18J-01 9 117396146 117396146 G C C9orf91 Missense_Mutation p.Q191H 0.18 tolerated(0.44) possibly_damaging(0.866) TCGA-BH-A18J-01 9 130469416 130469416 G T C9orf117 Nonsense_Mutation p.E36* 0.19 TCGA-BH-A18J-01 9 16870698 16870698 C T BNC2 5'UTR 0.30 TCGA-BH-A18J-01 9 6015273 6015273 C G RANBP6 Missense_Mutation p.S112T 0.29 tolerated(0.68) benign(0.009) TCGA-BH-A18J-01 9 80040632 80040632 C G GNA14 Splice_Site p.X242_splice 0.21 TCGA-BH-A18J-01 X 123539084 123539084 C G TENM1 Missense_Mutation p.D1730H 0.28 deleterious(0) benign(0.443) TCGA-BH-A18J-01 X 153701113 153701113 C T PLXNA3 3'UTR 0.20 TCGA-BH-A18J-01 X 20148714 20148714 C A EIF1AX Nonsense_Mutation p.E117* 0.22 TCGA-BH-A18J-01 X 49856914 49856914 A G CLCN5 3'UTR 0.05 TCGA-BH-A18J-01 X 70462830 70462830 G A ZMYM3 Silent p.L1179L 0.10 TCGA-BH-A18J-01 X 7066184 7066184 G A HDHD1 5'UTR 0.43 TCGA-BH-A18J-01 X 83359543 83359543 T G RPS6KA6 Silent p.V526V 0.03 TCGA-BH-A18K-01 10 76910307 76910307 C G SAMD8 Silent p.L7L 0.03 TCGA-BH-A18K-01 11 46896381 46896381 T C LRP4 Missense_Mutation p.Y1400C 0.46 deleterious(0) probably_damaging(0.995) TCGA-BH-A18K-01 11 62996780 62996780 G A SLC22A25 Silent p.P115P 0.48 TCGA-BH-A18K-01 11 75562988 75562988 C T UVRAG Nonsense_Mutation p.Q60* 0.06 TCGA-BH-A18K-01 11 88911241 88911241 C G TYR Missense_Mutation p.S40R 0.14 tolerated(0.43) benign(0.002) TCGA-BH-A18K-01 12 104495927 104495927 C G HCFC2 Nonsense_Mutation p.S687* 0.04 TCGA-BH-A18K-01 12 31632827 31632827 G C DENND5B Missense_Mutation p.F200L 0.03 tolerated(0.06) possibly_damaging(0.651) TCGA-BH-A18K-01 12 39087515 39087515 G C CPNE8 Missense_Mutation p.L363V 0.16 deleterious(0.01) benign(0.386) TCGA-BH-A18K-01 12 52967131 52967131 A T KRT74 Missense_Mutation p.I144N 0.21 deleterious(0) probably_damaging(0.958) TCGA-BH-A18K-01 12 72037937 72037937 G A ZFC3H1 Nonsense_Mutation p.Q481* 0.04 TCGA-BH-A18K-01 14 24650749 24650749 G C IPO4 Missense_Mutation p.F1005L 0.05 tolerated(1) benign(0.01) TCGA-BH-A18K-01 14 33290671 33290671 G C AKAP6 Missense_Mutation p.E1218Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-BH-A18K-01 16 30977152 30977152 T A SETD1A Silent p.P650P 0.24 TCGA-BH-A18K-01 16 58633279 58633280 - A CNOT1 5'UTR 0.40 TCGA-BH-A18K-01 17 18065989 18065989 T C MYO15A Missense_Mutation p.M3203T 0.28 unknown(0) TCGA-BH-A18K-01 17 29111348 29111348 C T CRLF3 Missense_Mutation p.E396K 0.04 deleterious_low_confidence(0.04) benign(0.254) TCGA-BH-A18K-01 17 34937779 34937779 C T GGNBP2 Silent p.T342T 0.24 TCGA-BH-A18K-01 17 42255078 42255078 A T ASB16 Silent p.P388P 0.19 TCGA-BH-A18K-01 17 56679877 56679877 C T TEX14 Missense_Mutation p.D477N 0.03 deleterious(0) probably_damaging(1) TCGA-BH-A18K-01 17 70117908 70117908 C T SOX9 Nonsense_Mutation p.Q126* 0.55 TCGA-BH-A18K-01 17 76676295 76676297 CTT - CYTH1 In_Frame_Del p.K365del 0.27 TCGA-BH-A18K-01 19 11475429 11475429 C T DKFZP761J1410 3'UTR 0.28 TCGA-BH-A18K-01 19 20229605 20229605 A G ZNF90 Missense_Mutation p.I414M 0.30 deleterious(0.03) benign(0.252) TCGA-BH-A18K-01 19 37904255 37904255 C G ZNF569 Missense_Mutation p.E435D 0.17 deleterious(0.02) probably_damaging(0.981) TCGA-BH-A18K-01 19 41211300 41211300 C T ADCK4 Silent p.E140E 0.15 TCGA-BH-A18K-01 19 53611669 53611669 T C ZNF415 Silent p.Q543Q 0.70 TCGA-BH-A18K-01 19 55494011 55494011 C T NLRP2 Silent p.P315P 0.31 TCGA-BH-A18K-01 1 145539030 145539030 C T ITGA10 Silent p.L990L 0.29 TCGA-BH-A18K-01 1 153747796 153747796 T C SLC27A3 5'UTR 0.59 TCGA-BH-A18K-01 1 155184370 155184370 G A MTX1 3'Flank 0.05 TCGA-BH-A18K-01 1 155218065 155218065 G C FAM189B Missense_Mutation p.L537V 0.06 tolerated(0.15) probably_damaging(0.977) TCGA-BH-A18K-01 1 158644209 158644209 G A SPTA1 Silent p.D420D 0.15 TCGA-BH-A18K-01 1 159019232 159019232 A G IFI16 Intron 0.09 TCGA-BH-A18K-01 1 15909821 15909821 G A AGMAT Silent p.L114L 0.04 TCGA-BH-A18K-01 1 201924671 201924671 G C TIMM17A Missense_Mutation p.R6P 0.27 deleterious(0.01) possibly_damaging(0.476) TCGA-BH-A18K-01 1 21097424 21097424 T A HP1BP3 Missense_Mutation p.Q218L 0.31 deleterious(0) probably_damaging(0.954) TCGA-BH-A18K-01 1 21928254 21928254 G A RAP1GAP Silent p.S589S 0.26 TCGA-BH-A18K-01 1 84408343 84408343 C T TTLL7 Missense_Mutation p.G176S 0.11 tolerated(0.53) benign(0.411) TCGA-BH-A18K-01 20 30960226 30960226 G A ASXL1 Intron 0.35 TCGA-BH-A18K-01 20 43992225 43992225 G T SYS1 Missense_Mutation p.Q18H 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A18K-01 2 219492900 219492900 C T PLCD4 Silent p.T307T 0.31 TCGA-BH-A18K-01 2 95944749 95944749 G A PROM2 Silent p.V377V 0.39 TCGA-BH-A18K-01 3 101477254 101477254 G A CEP97 Missense_Mutation p.D602N 0.21 tolerated(0.12) benign(0.02) TCGA-BH-A18K-01 3 133337228 133337228 C G TOPBP1 Missense_Mutation p.E1141Q 0.21 tolerated(0.09) probably_damaging(0.943) TCGA-BH-A18K-01 3 184104637 184104637 G A CHRD Missense_Mutation p.R734Q 0.33 deleterious(0.02) benign(0.131) TCGA-BH-A18K-01 3 37356982 37356982 G A GOLGA4 Missense_Mutation p.E458K 0.17 possibly_damaging(0.782) TCGA-BH-A18K-01 3 56716828 56716828 G A FAM208A Silent p.L69L 0.22 TCGA-BH-A18K-01 3 62535703 62535703 A C CADPS Missense_Mutation p.L614R 0.24 deleterious(0) possibly_damaging(0.632) TCGA-BH-A18K-01 3 73096423 73096423 G C PPP4R2 Missense_Mutation p.R68T 0.22 deleterious(0) probably_damaging(0.958) TCGA-BH-A18K-01 4 48422280 48422280 C T SLAIN2 Missense_Mutation p.S500L 0.03 deleterious(0.03) probably_damaging(0.99) TCGA-BH-A18K-01 4 53610409 53610409 C G ERVMER34-1 Missense_Mutation p.D427H 0.15 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-BH-A18K-01 5 115823840 115823842 GAA - SEMA6A In_Frame_Del p.F236del 0.33 TCGA-BH-A18K-01 5 140176351 140176351 C T PCDHA2 Missense_Mutation p.S601L 0.13 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-BH-A18K-01 5 160047471 160047471 C G ATP10B Missense_Mutation p.D767H 0.07 deleterious(0.02) probably_damaging(1) TCGA-BH-A18K-01 5 67591111 67591112 - GAC PIK3R1 In_Frame_Ins p.D569dup 0.36 TCGA-BH-A18K-01 6 117710620 117710620 G A ROS1 Missense_Mutation p.S551F 0.13 tolerated(0.11) benign(0.144) TCGA-BH-A18K-01 6 26092916 26092916 C T HFE Missense_Mutation p.P207L 0.38 deleterious(0.03) benign(0.008) TCGA-BH-A18K-01 6 27220721 27220721 C T PRSS16 Silent p.F381F 0.14 TCGA-BH-A18K-01 7 12401033 12401033 C A VWDE Missense_Mutation p.D1005Y 0.35 deleterious(0) benign(0.013) TCGA-BH-A18K-01 7 151860812 151860812 C A KMT2C Missense_Mutation p.V3284F 0.07 possibly_damaging(0.774) TCGA-BH-A18K-01 7 64292058 64292058 A C ZNF138 Missense_Mutation p.K120N 0.10 tolerated(0.07) probably_damaging(0.917) TCGA-BH-A18K-01 7 77649066 77649066 C T MAGI2 Missense_Mutation p.E1312K 0.16 tolerated(0.41) possibly_damaging(0.899) TCGA-BH-A18K-01 8 38271457 38271457 G A FGFR1 Silent p.I788I 0.44 TCGA-BH-A18K-01 8 87568396 87568396 A G CPNE3 Missense_Mutation p.I441V 0.42 tolerated(0.21) probably_damaging(0.999) TCGA-BH-A18K-01 9 140395216 140395216 C G PNPLA7 Missense_Mutation p.E562Q 0.15 deleterious(0) probably_damaging(0.994) TCGA-BH-A18K-01 X 154293605 154293605 C T MTCP1 3'UTR 0.21 TCGA-BH-A18K-01 X 30578396 30578396 T G CXorf21 Missense_Mutation p.Q26P 0.05 tolerated(0.26) benign(0.006) TCGA-BH-A18K-01 X 49645295 49645295 C T USP27X Silent p.L129L 0.41 TCGA-BH-A18K-01 X 54020069 54020069 G A PHF8 Nonsense_Mutation p.Q567* 0.04 TCGA-BH-A18K-01 X 74742819 74742819 C T ZDHHC15 Missense_Mutation p.R14Q 0.12 deleterious(0.04) possibly_damaging(0.49) TCGA-BH-A18K-01 X 76940008 76940008 T C ATRX Missense_Mutation p.N247S 0.40 probably_damaging(0.967) TCGA-BH-A18K-01 X 9907344 9907344 G A SHROOM2 Missense_Mutation p.E1417K 0.06 deleterious(0.02) benign(0.063) TCGA-BH-A18L-01 10 120795555 120795555 C T EIF3A Missense_Mutation p.R1382H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-BH-A18L-01 10 20357104 20357104 G T PLXDC2 Silent p.V159V 0.39 TCGA-BH-A18L-01 10 64974081 64974081 G A JMJD1C Nonsense_Mutation p.R616* 0.48 TCGA-BH-A18L-01 10 97920550 97920550 A G ZNF518A RNA 0.06 TCGA-BH-A18L-01 11 4143440 4143440 C T RRM1 Silent p.L370L 0.04 TCGA-BH-A18L-01 11 60184225 60184225 A T MS4A14 Missense_Mutation p.Q628L 0.07 deleterious(0.03) benign(0.003) TCGA-BH-A18L-01 11 63683048 63683048 C A RCOR2 Missense_Mutation p.V55L 0.26 tolerated(0.37) possibly_damaging(0.804) TCGA-BH-A18L-01 11 6625407 6625407 T C ILK 5'UTR 0.33 TCGA-BH-A18L-01 11 68030231 68030231 C T C11orf24 Missense_Mutation p.E78K 0.10 tolerated(0.71) unknown(0) TCGA-BH-A18L-01 11 96074719 96074719 G A MAML2 Missense_Mutation p.A114V 0.32 benign(0.001) TCGA-BH-A18L-01 12 109999629 109999629 G A MMAB Missense_Mutation p.S126L 0.09 deleterious(0) probably_damaging(0.949) TCGA-BH-A18L-01 12 124358133 124358133 G A DNAH10 Missense_Mutation p.R2487H 0.06 probably_damaging(0.997) TCGA-BH-A18L-01 12 129559467 129559467 G T TMEM132D Missense_Mutation p.F751L 0.18 tolerated(0.66) benign(0.002) TCGA-BH-A18L-01 12 132631925 132631925 C T NOC4L Missense_Mutation p.L149F 0.09 tolerated(0.13) benign(0.26) TCGA-BH-A18L-01 12 22837985 22837985 T G ETNK1 3'UTR 0.51 TCGA-BH-A18L-01 13 97639726 97639726 G A OXGR1 Silent p.G96G 0.54 TCGA-BH-A18L-01 14 105958575 105958575 C G C14orf80 Missense_Mutation p.R120G 0.38 deleterious(0.05) benign(0.146) TCGA-BH-A18L-01 14 24910979 24910980 - T SDR39U1 Frame_Shift_Ins p.E77Rfs*15 0.42 TCGA-BH-A18L-01 14 75520314 75520314 G A ACYP1 Missense_Mutation p.R45W 0.12 deleterious(0) benign(0.443) TCGA-BH-A18L-01 14 75551376 75551376 G A NEK9 Missense_Mutation p.S944F 0.20 deleterious_low_confidence(0.01) benign(0.113) TCGA-BH-A18L-01 14 75928163 75928163 G C JDP2 Missense_Mutation p.R90P 0.05 deleterious(0.01) possibly_damaging(0.619) TCGA-BH-A18L-01 14 96792113 96792113 C G ATG2B Missense_Mutation p.W770C 0.45 deleterious(0.01) probably_damaging(0.985) TCGA-BH-A18L-01 15 45722839 45722839 C T C15orf48 5'UTR 0.50 TCGA-BH-A18L-01 15 90212738 90212738 A T PLIN1 Missense_Mutation p.V255E 0.09 deleterious(0.01) benign(0.09) TCGA-BH-A18L-01 16 21897745 21897745 G T snoU13 3'Flank 0.23 TCGA-BH-A18L-01 17 27047625 27047625 A G RPL23A Intron 0.29 TCGA-BH-A18L-01 17 42746929 42746929 A T C17orf104 Intron 0.35 TCGA-BH-A18L-01 17 44159813 44159813 A T KANSL1 Missense_Mutation p.D509E 0.04 tolerated(0.67) benign(0.013) TCGA-BH-A18L-01 17 4442756 4442756 C T MYBBP1A Missense_Mutation p.S1314N 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.549) TCGA-BH-A18L-01 17 74865171 74865171 A G MGAT5B 5'Flank 0.09 TCGA-BH-A18L-01 18 56203789 56203789 G A ALPK2 Silent p.N1210N 0.49 TCGA-BH-A18L-01 19 54647208 54647208 G A CNOT3 Missense_Mutation p.E42K 0.17 deleterious(0) probably_damaging(0.994) TCGA-BH-A18L-01 19 9062672 9062672 G T MUC16 Silent p.S8258S 0.28 TCGA-BH-A18L-01 1 159846491 159846491 G A CCDC19 Missense_Mutation p.R403C 0.16 deleterious(0) probably_damaging(0.993) TCGA-BH-A18L-01 1 182441531 182441531 G C RGSL1 Missense_Mutation p.G101A 0.07 deleterious(0) probably_damaging(0.997) TCGA-BH-A18L-01 1 222876531 222876531 G A AIDA Nonsense_Mutation p.Q47* 0.23 TCGA-BH-A18L-01 1 231060607 231060607 G A TTC13 Silent p.D567D 0.09 TCGA-BH-A18L-01 1 248637259 248637259 T A OR2T3 Missense_Mutation p.L203H 0.14 deleterious(0) possibly_damaging(0.905) TCGA-BH-A18L-01 1 248637260 248637260 C A OR2T3 Silent p.L203L 0.14 TCGA-BH-A18L-01 20 58563973 58563973 G C CDH26 Missense_Mutation p.E346D 0.28 tolerated(0.06) possibly_damaging(0.823) TCGA-BH-A18L-01 21 30934056 30934056 C T GRIK1 Missense_Mutation p.A749T 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A18L-01 22 39475005 39475005 G A APOBEC3G Missense_Mutation p.R29H 0.80 tolerated(0.2) benign(0.006) TCGA-BH-A18L-01 2 33809886 33809886 T G FAM98A Missense_Mutation p.Y505S 0.43 deleterious_low_confidence(0) unknown(0) TCGA-BH-A18L-01 3 40192554 40192554 A T MYRIP Missense_Mutation p.Q116H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BH-A18L-01 3 52557051 52557051 C T STAB1 Silent p.C2307C 0.09 TCGA-BH-A18L-01 3 53837546 53837546 G A CACNA1D Silent p.E1864E 0.07 TCGA-BH-A18L-01 4 186382244 186382244 C G CCDC110 Missense_Mutation p.E103Q 0.16 deleterious(0.01) possibly_damaging(0.897) TCGA-BH-A18L-01 5 108290582 108290582 T C FER Silent p.L494L 0.12 TCGA-BH-A18L-01 5 135587470 135587470 G A TRPC7 Silent p.F482F 0.54 TCGA-BH-A18L-01 5 140625360 140625360 G C PCDHB15 Missense_Mutation p.E72Q 0.08 tolerated_low_confidence(0.06) benign(0.051) TCGA-BH-A18L-01 5 14758638 14758638 G A ANKH Missense_Mutation p.T128M 0.12 deleterious(0) probably_damaging(0.999) TCGA-BH-A18L-01 5 175793493 175793493 G A ARL10 Silent p.S98S 0.16 TCGA-BH-A18L-01 5 74078857 74078857 C A FAM169A Nonsense_Mutation p.E455* 0.13 TCGA-BH-A18L-01 6 12125257 12125257 G A HIVEP1 Silent p.S1743S 0.04 TCGA-BH-A18L-01 7 15652133 15652133 C T MEOX2 Missense_Mutation p.G265E 0.53 deleterious(0) probably_damaging(0.998) TCGA-BH-A18L-01 8 22136963 22136963 G A PIWIL2 Missense_Mutation p.V22I 0.28 tolerated_low_confidence(0.13) benign(0.118) TCGA-BH-A18L-01 9 127089686 127089686 G A NEK6 Missense_Mutation p.R229H 0.30 deleterious(0) probably_damaging(0.99) TCGA-BH-A18L-01 9 136272163 136272163 C G REXO4 Missense_Mutation p.V395L 0.08 tolerated(0.18) benign(0.002) TCGA-BH-A18L-01 9 140672361 140672361 C T EHMT1 Silent p.D682D 0.15 TCGA-BH-A18L-01 9 94487328 94487328 C T ROR2 Missense_Mutation p.R483Q 0.37 tolerated(0.43) benign(0.076) TCGA-BH-A18L-01 X 107412837 107412837 G A COL4A6 Silent p.T1194T 0.18 TCGA-BH-A18L-01 X 130218365 130218365 A G ARHGAP36 Silent p.Q244Q 0.18 TCGA-BH-A18L-01 X 134185956 134185956 G A FAM127B Silent p.D61D 0.22 TCGA-BH-A18L-01 X 31697624 31697624 C T DMD Silent p.K2580K 0.04 TCGA-BH-A18L-01 X 66863162 66863162 C A AR Missense_Mutation p.L561M 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A18L-01 X 86872933 86872933 A G KLHL4 Splice_Site p.X243_splice 0.56 TCGA-BH-A18M-01 10 8100382 8100382 A T GATA3 Missense_Mutation p.K119M 0.51 deleterious(0) probably_damaging(0.979) TCGA-BH-A18M-01 12 6091157 6091157 G A VWF Missense_Mutation p.A2361V 0.18 tolerated(0.65) benign(0.03) TCGA-BH-A18M-01 12 64472859 64472859 G A SRGAP1 Missense_Mutation p.R429K 0.20 deleterious(0.02) possibly_damaging(0.795) TCGA-BH-A18M-01 13 43930084 43930084 T C ENOX1 Missense_Mutation p.E265G 0.18 deleterious(0) possibly_damaging(0.531) TCGA-BH-A18M-01 14 102466722 102466722 G A DYNC1H1 Missense_Mutation p.V1354I 0.03 benign(0.361) TCGA-BH-A18M-01 17 33316500 33316500 C G LIG3 Missense_Mutation p.S236C 0.22 deleterious(0.02) possibly_damaging(0.664) TCGA-BH-A18M-01 1 230492718 230492718 G A PGBD5 Silent p.H158H 0.11 TCGA-BH-A18M-01 20 58318188 58318188 C T PHACTR3 Missense_Mutation p.R49C 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A18M-01 20 60498706 60498706 C T CDH4 Silent p.T524T 0.27 TCGA-BH-A18M-01 2 121747788 121747788 C T GLI2 Missense_Mutation p.P1433L 0.23 tolerated(0.24) benign(0.001) TCGA-BH-A18M-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.25 deleterious(0) probably_damaging(0.96) TCGA-BH-A18M-01 2 28113135 28113135 G T RBKS Silent p.T26T 0.19 TCGA-BH-A18M-01 3 13671349 13671349 C T FBLN2 Missense_Mutation p.R958C 0.11 deleterious(0) probably_damaging(0.981) TCGA-BH-A18M-01 4 100340221 100340221 G A ADH7 Missense_Mutation p.P315S 0.22 tolerated(0.17) probably_damaging(0.999) TCGA-BH-A18M-01 5 130970657 130970657 C T RAPGEF6 Missense_Mutation p.E23K 0.15 deleterious(0.02) benign(0.002) TCGA-BH-A18M-01 8 53050007 53050007 C T ST18 Silent p.V735V 0.26 TCGA-BH-A18M-01 9 126213014 126213014 T G DENND1A Silent p.A438A 0.15 TCGA-BH-A18M-01 X 63411027 63411027 G C AMER1 Missense_Mutation p.Q714E 0.20 tolerated(0.15) benign(0.401) TCGA-BH-A18N-01 11 107925435 107925435 A G CUL5 Silent p.A205A 0.56 TCGA-BH-A18N-01 11 19955784 19955784 A G NAV2 Missense_Mutation p.N688S 0.54 tolerated(1) benign(0.001) TCGA-BH-A18N-01 11 68579905 68579905 G A CPT1A Missense_Mutation p.A94V 0.23 tolerated(0.51) benign(0.003) TCGA-BH-A18N-01 12 122825568 122825568 A G CLIP1 Missense_Mutation p.M728T 0.45 deleterious(0) possibly_damaging(0.904) TCGA-BH-A18N-01 12 46244619 46244619 C A ARID2 Missense_Mutation p.Q905K 0.06 tolerated_low_confidence(0.38) benign(0.034) TCGA-BH-A18N-01 12 55357565 55357565 G A TESPA1 Missense_Mutation p.R206W 0.45 deleterious(0) probably_damaging(0.931) TCGA-BH-A18N-01 12 68552013 68552013 A G IFNG Silent p.D47D 0.46 TCGA-BH-A18N-01 13 100518497 100518497 C G CLYBL Missense_Mutation p.A213G 0.67 tolerated(0.05) benign(0.443) TCGA-BH-A18N-01 13 100617886 100617886 C T ZIC5 Silent p.P579P 0.60 TCGA-BH-A18N-01 14 47389322 47389322 G T MDGA2 Missense_Mutation p.P711T 0.17 deleterious(0) benign(0.385) TCGA-BH-A18N-01 16 19554266 19554266 C A CCP110 Missense_Mutation p.R812S 0.11 deleterious(0) probably_damaging(0.988) TCGA-BH-A18N-01 16 61689592 61689592 C G CDH8 Missense_Mutation p.G563A 0.11 deleterious(0.04) benign(0.013) TCGA-BH-A18N-01 17 66511561 66511561 C T PRKAR1A Silent p.A7A 0.38 TCGA-BH-A18N-01 17 7484092 7484092 C G CD68 Missense_Mutation p.H251D 0.45 tolerated(0.13) benign(0.08) TCGA-BH-A18N-01 18 50432563 50432563 C A DCC Silent p.R188R 0.40 TCGA-BH-A18N-01 19 36051382 36051382 C T ATP4A Missense_Mutation p.V224M 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18N-01 19 52034970 52034970 C T SIGLEC6 5'UTR 0.36 TCGA-BH-A18N-01 19 8661201 8661201 T A ADAMTS10 Missense_Mutation p.I394F 0.07 deleterious(0) possibly_damaging(0.795) TCGA-BH-A18N-01 1 11589972 11589972 G A PTCHD2 Missense_Mutation p.V1020I 0.21 tolerated(0.58) benign(0.001) TCGA-BH-A18N-01 1 160720169 160720169 T C SLAMF7 Missense_Mutation p.V242A 0.24 tolerated(0.42) benign(0.006) TCGA-BH-A18N-01 1 2125495 2125495 A G C1orf86 Missense_Mutation p.V47A 0.24 tolerated(0.89) possibly_damaging(0.728) TCGA-BH-A18N-01 1 2452259 2452259 T C PANK4 Missense_Mutation p.Q170R 0.26 tolerated(0.46) possibly_damaging(0.471) TCGA-BH-A18N-01 20 32345105 32345105 C T ZNF341 Missense_Mutation p.T298M 0.36 tolerated(0.26) benign(0.024) TCGA-BH-A18N-01 20 62153067 62153067 C T PPDPF Silent p.F60F 0.41 TCGA-BH-A18N-01 2 103141501 103141501 T - SLC9A4 Frame_Shift_Del p.Y613Tfs*16 0.40 TCGA-BH-A18N-01 2 18767558 18767558 A T NT5C1B Missense_Mutation p.S134T 0.26 deleterious_low_confidence(0.02) benign(0.027) TCGA-BH-A18N-01 2 197171902 197171902 C T HECW2 Missense_Mutation p.A881T 0.49 tolerated(0.17) benign(0.001) TCGA-BH-A18N-01 2 215843723 215843723 G A ABCA12 Silent p.A1594A 0.30 TCGA-BH-A18N-01 3 110831214 110831214 G C PVRL3 Silent p.V166V 0.33 TCGA-BH-A18N-01 3 74418485 74418485 C A CNTN3 Silent p.L267L 0.08 TCGA-BH-A18N-01 5 140024286 140024286 T G TMCO6 Missense_Mutation p.S443R 0.36 deleterious(0.02) probably_damaging(0.982) TCGA-BH-A18N-01 5 140167950 140167950 C T PCDHA1 Missense_Mutation p.A692V 0.15 tolerated_low_confidence(0.08) benign(0.031) TCGA-BH-A18N-01 5 140769029 140769029 C T PCDHGB4 Silent p.F526F 0.10 TCGA-BH-A18N-01 5 140789281 140789281 C G PCDHGB6 Nonsense_Mutation p.Y504* 0.38 TCGA-BH-A18N-01 5 178505880 178505880 G A ZNF354C Silent p.S149S 0.09 TCGA-BH-A18N-01 5 56177058 56177059 - GTCA MAP3K1 Frame_Shift_Ins p.T779Qfs*3 0.42 TCGA-BH-A18N-01 5 56177978 56177978 C G MAP3K1 Nonsense_Mutation p.S984* 0.49 TCGA-BH-A18N-01 6 152804248 152804248 G A SYNE1 Missense_Mutation p.T441M 0.21 benign(0.432) TCGA-BH-A18N-01 6 158922767 158922767 T C TULP4 Missense_Mutation p.I691T 0.23 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-BH-A18N-01 6 42931381 42931381 T C GNMT Silent p.P275P 0.14 TCGA-BH-A18N-01 7 141721528 141721528 A G MGAM Missense_Mutation p.N234S 0.58 tolerated(0.21) benign(0.002) TCGA-BH-A18N-01 7 151845844 151845844 G - KMT2C Frame_Shift_Del p.K4391Nfs*22 0.34 TCGA-BH-A18N-01 8 79588092 79588092 A G ZC2HC1A Silent p.V29V 0.09 TCGA-BH-A18N-01 9 131757730 131757730 C G NUP188 Silent p.S1096S 0.27 TCGA-BH-A18N-01 9 95013001 95013001 C T IARS Missense_Mutation p.R808H 0.29 tolerated(0.14) benign(0) TCGA-BH-A18N-01 X 100912106 100912106 T C ARMCX2 Missense_Mutation p.M157V 0.73 tolerated_low_confidence(0.62) benign(0.001) TCGA-BH-A18P-01 10 104174852 104174852 C T PSD Missense_Mutation p.E298K 0.09 deleterious(0) probably_damaging(0.986) TCGA-BH-A18P-01 10 104638240 104638240 C T AS3MT Nonsense_Mutation p.Q239* 0.11 TCGA-BH-A18P-01 10 21134276 21134276 C G NEBL Missense_Mutation p.E380Q 0.22 deleterious(0) possibly_damaging(0.816) TCGA-BH-A18P-01 10 26994296 26994296 G C PDSS1 Missense_Mutation p.L103F 0.17 deleterious(0.02) probably_damaging(0.98) TCGA-BH-A18P-01 10 27537777 27537777 C T RP11-85G18.6 Intron 0.19 TCGA-BH-A18P-01 10 28413936 28413936 C T MPP7 Intron 0.22 TCGA-BH-A18P-01 10 50227728 50227728 G A VSTM4 Silent p.Y310Y 0.41 TCGA-BH-A18P-01 10 51827768 51827768 G A FAM21A Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-BH-A18P-01 10 52595937 52595937 G A A1CF Silent p.I175I 0.17 TCGA-BH-A18P-01 10 81318708 81318708 G A SFTPA2 Missense_Mutation p.P76S 0.04 tolerated(0.24) benign(0.002) TCGA-BH-A18P-01 10 90674350 90674350 C T STAMBPL1 Silent p.L280L 0.05 TCGA-BH-A18P-01 11 100846911 100846911 G C ARHGAP42 Missense_Mutation p.G660A 0.07 tolerated(0.33) benign(0.001) TCGA-BH-A18P-01 11 10622555 10622555 G C MRVI1 Missense_Mutation p.L643V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18P-01 11 108002665 108002665 C T ACAT1 Missense_Mutation p.S35L 0.21 tolerated(0.11) benign(0.04) TCGA-BH-A18P-01 11 118255641 118255642 TT - UBE4A Frame_Shift_Del p.L806Gfs*2 0.62 TCGA-BH-A18P-01 11 130131407 130131407 G A ZBTB44 Missense_Mutation p.S121L 0.38 tolerated(0.11) probably_damaging(0.995) TCGA-BH-A18P-01 11 16776434 16776434 G C C11orf58 Missense_Mutation p.G112A 0.19 tolerated(0.88) benign(0.058) TCGA-BH-A18P-01 11 18472711 18472711 G A LDHC 3'UTR 0.15 TCGA-BH-A18P-01 11 32414250 32414250 C T WT1 Missense_Mutation p.R434H 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BH-A18P-01 11 35515803 35515803 C T PAMR1 Missense_Mutation p.E31K 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A18P-01 11 47837108 47837108 G A NUP160 Nonsense_Mutation p.Q537* 0.18 TCGA-BH-A18P-01 11 47837124 47837124 G A NUP160 Silent p.F531F 0.19 TCGA-BH-A18P-01 11 56468158 56468158 C A OR9G1 Missense_Mutation p.Q99K 0.06 deleterious(0) probably_damaging(0.999) TCGA-BH-A18P-01 11 57971065 57971065 G C OR1S2 Missense_Mutation p.L197V 0.68 tolerated(0.13) probably_damaging(0.999) TCGA-BH-A18P-01 11 58714563 58714563 G A GLYATL1 Intron 0.33 TCGA-BH-A18P-01 11 61026446 61026446 G C VWCE Missense_Mutation p.L857V 0.42 tolerated_low_confidence(0.07) benign(0.341) TCGA-BH-A18P-01 11 6541509 6541509 G A DNHD1 Silent p.L609L 0.39 TCGA-BH-A18P-01 11 65486337 65486337 C G KAT5 Intron 0.38 TCGA-BH-A18P-01 11 6631267 6631267 G A ILK Splice_Site p.X360_splice 0.10 TCGA-BH-A18P-01 11 72409112 72409112 C T ARAP1 Missense_Mutation p.D861N 0.27 tolerated(0.12) benign(0.024) TCGA-BH-A18P-01 11 74062496 74062496 C G PGM2L1 Silent p.L227L 0.13 TCGA-BH-A18P-01 11 792383 792383 C G SLC25A22 Missense_Mutation p.E221D 0.11 tolerated(0.38) benign(0.007) TCGA-BH-A18P-01 11 837971 837971 C A CD151 Missense_Mutation p.F215L 0.23 deleterious(0.05) possibly_damaging(0.619) TCGA-BH-A18P-01 11 8670091 8670091 C G TRIM66 Silent p.V54V 0.10 TCGA-BH-A18P-01 11 96117522 96117522 T A CCDC82 Missense_Mutation p.L130F 0.64 tolerated(0.13) unknown(0) TCGA-BH-A18P-01 12 100660753 100660753 C G DEPDC4 Silent p.L34L 0.22 TCGA-BH-A18P-01 12 100813924 100813924 C G SLC17A8 Nonsense_Mutation p.S586* 0.20 TCGA-BH-A18P-01 12 101018311 101018311 G A GAS2L3 Silent p.Q576Q 0.41 TCGA-BH-A18P-01 12 10151806 10151807 - T CLEC1B 5'UTR 0.14 TCGA-BH-A18P-01 12 113704123 113704123 G A TPCN1 Missense_Mutation p.E198K 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A18P-01 12 120166328 120166328 G A CIT Silent p.L1190L 0.19 TCGA-BH-A18P-01 12 132403792 132403792 C T ULK1 Silent p.F849F 0.19 TCGA-BH-A18P-01 12 132426061 132426061 C T PUS1 Missense_Mutation p.P257S 0.18 deleterious(0) probably_damaging(0.911) TCGA-BH-A18P-01 12 14923905 14923905 G T HIST4H4 Silent p.L38L 0.19 TCGA-BH-A18P-01 12 31545273 31545273 C G DENND5B Missense_Mutation p.E1132Q 0.37 deleterious(0) probably_damaging(0.982) TCGA-BH-A18P-01 12 40041721 40041721 C T C12orf40 Missense_Mutation p.T171I 0.16 tolerated(0.45) benign(0.084) TCGA-BH-A18P-01 12 46321241 46321241 G A SCAF11 Missense_Mutation p.S748F 0.17 tolerated(0.08) possibly_damaging(0.826) TCGA-BH-A18P-01 12 48062806 48062806 G A RPAP3 Nonsense_Mutation p.Q536* 0.20 TCGA-BH-A18P-01 12 51097988 51097988 G T DIP2B Silent p.L797L 0.46 TCGA-BH-A18P-01 12 51126146 51126146 C T DIP2B Intron 0.20 TCGA-BH-A18P-01 12 52180367 52180367 G A SCN8A Missense_Mutation p.M1328I 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-BH-A18P-01 12 56295575 56295575 G A WIBG 3'UTR 0.09 TCGA-BH-A18P-01 12 56482607 56482607 C T ERBB3 Missense_Mutation p.T355I 0.59 deleterious(0) probably_damaging(0.998) TCGA-BH-A18P-01 12 56626564 56626564 C T SLC39A5 Missense_Mutation p.H127Y 0.10 tolerated(1) benign(0.127) TCGA-BH-A18P-01 12 57599437 57599437 C T LRP1 Missense_Mutation p.T3856M 0.29 benign(0.022) TCGA-BH-A18P-01 12 6677069 6677069 C G NOP2 Missense_Mutation p.D6H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BH-A18P-01 12 675158 675158 G A NINJ2 Silent p.L120L 0.18 TCGA-BH-A18P-01 12 99548377 99548377 G C ANKS1B Intron 0.24 TCGA-BH-A18P-01 13 108518787 108518787 G C FAM155A Missense_Mutation p.S53C 0.20 deleterious(0) probably_damaging(0.997) TCGA-BH-A18P-01 13 108922524 108922524 G A TNFSF13B Missense_Mutation p.G94E 0.30 tolerated(0.64) benign(0.004) TCGA-BH-A18P-01 13 114748679 114748679 C G RASA3 3'UTR 0.17 TCGA-BH-A18P-01 13 25264553 25264553 C T ATP12A Silent p.V208V 0.17 TCGA-BH-A18P-01 13 29005385 29005385 G C FLT1 Missense_Mutation p.F292L 0.21 tolerated(0.41) probably_damaging(0.996) TCGA-BH-A18P-01 13 41495642 41495642 G A SUGT1P3 RNA 0.18 TCGA-BH-A18P-01 13 47127578 47127578 C T LRCH1 Missense_Mutation p.S16L 0.20 deleterious_low_confidence(0.01) benign(0.294) TCGA-BH-A18P-01 13 49054142 49054142 C T RB1 Nonsense_Mutation p.R908* 0.03 TCGA-BH-A18P-01 13 50276031 50276031 C T KPNA3 Missense_Mutation p.D491N 0.22 deleterious(0.04) benign(0.341) TCGA-BH-A18P-01 13 52325491 52325491 G A WDFY2 Silent p.L257L 0.16 TCGA-BH-A18P-01 13 75866384 75866384 C T TBC1D4 Missense_Mutation p.E1114K 0.43 deleterious(0) benign(0.261) TCGA-BH-A18P-01 13 79233311 79233311 C A RNF219 5'UTR 0.24 TCGA-BH-A18P-01 14 103442325 103442325 C T CDC42BPB Missense_Mutation p.E428K 0.20 tolerated(0.82) benign(0.097) TCGA-BH-A18P-01 14 105685609 105685609 C T BRF1 Intron 0.43 TCGA-BH-A18P-01 14 20824784 20824784 G A PARP2 Nonsense_Mutation p.W435* 0.21 TCGA-BH-A18P-01 14 21052286 21052286 C G RNASE11 Missense_Mutation p.W116C 0.22 deleterious(0.02) possibly_damaging(0.67) TCGA-BH-A18P-01 14 21463019 21463019 G A METTL17 Missense_Mutation p.E279K 0.41 tolerated(0.17) benign(0.03) TCGA-BH-A18P-01 14 23791462 23791462 G A PABPN1 Missense_Mutation p.E142K 0.17 tolerated(0.18) benign(0.233) TCGA-BH-A18P-01 14 23887614 23887614 G A MYH7 Missense_Mutation p.A1325V 0.52 deleterious(0.04) possibly_damaging(0.649) TCGA-BH-A18P-01 14 25045452 25045452 C G CTSG 5'UTR 0.22 TCGA-BH-A18P-01 14 38061461 38061461 G C FOXA1 Missense_Mutation p.I176M 0.54 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 14 39716818 39716818 C T MIA2 Missense_Mutation p.S347F 0.22 deleterious(0) probably_damaging(0.982) TCGA-BH-A18P-01 14 56138368 56138368 G C KTN1 Missense_Mutation p.E1145Q 0.15 deleterious(0) probably_damaging(0.989) TCGA-BH-A18P-01 14 60616218 60616218 G A DHRS7 Silent p.I275I 0.17 TCGA-BH-A18P-01 14 62207737 62207737 C T HIF1A Missense_Mutation p.P666S 0.16 tolerated(0.1) benign(0.007) TCGA-BH-A18P-01 14 65041213 65041213 G A PPP1R36 Missense_Mutation p.E192K 0.12 tolerated(1) benign(0.001) TCGA-BH-A18P-01 14 70924304 70924304 C G ADAM21 Missense_Mutation p.Q30E 0.17 tolerated(0.07) benign(0.266) TCGA-BH-A18P-01 14 70924844 70924844 C T ADAM21 Silent p.L210L 0.22 TCGA-BH-A18P-01 14 71267708 71267708 C T MAP3K9 Missense_Mutation p.D166N 0.21 deleterious(0.02) benign(0.04) TCGA-BH-A18P-01 14 73570127 73570127 A G RBM25 Silent p.R365R 0.21 TCGA-BH-A18P-01 14 73614700 73614700 G A PSEN1 5'UTR 0.35 TCGA-BH-A18P-01 14 73637628 73637628 G A PSEN1 Missense_Mutation p.E71K 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18P-01 14 74010102 74010102 G A ACOT1 Missense_Mutation p.E337K 0.15 tolerated(0.51) benign(0.022) TCGA-BH-A18P-01 14 77304305 77304305 G C C14orf166B Missense_Mutation p.E196Q 0.20 tolerated(1) benign(0.002) TCGA-BH-A18P-01 14 78399610 78399610 C G ADCK1 Missense_Mutation p.S483C 0.03 tolerated(0.21) benign(0.005) TCGA-BH-A18P-01 14 94711963 94711963 G A PPP4R4 Missense_Mutation p.E462K 0.03 tolerated(0.07) possibly_damaging(0.813) TCGA-BH-A18P-01 15 100339866 100339866 G A DNM1P46 RNA 0.58 TCGA-BH-A18P-01 15 20643938 20643938 G T HERC2P3 RNA 0.11 TCGA-BH-A18P-01 15 23021425 23021425 C T NIPA2 5'UTR 0.19 TCGA-BH-A18P-01 15 41384317 41384317 C - INO80 Frame_Shift_Del p.E149Nfs*74 0.11 TCGA-BH-A18P-01 15 41821754 41821754 G A RPAP1 Nonsense_Mutation p.R358* 0.19 TCGA-BH-A18P-01 15 42957501 42957501 G A STARD9 Silent p.L409L 0.20 TCGA-BH-A18P-01 15 43621556 43621556 C G LCMT2 Missense_Mutation p.E378Q 0.23 deleterious(0.03) possibly_damaging(0.562) TCGA-BH-A18P-01 15 43621844 43621844 C T LCMT2 Missense_Mutation p.E282K 0.20 deleterious(0.02) benign(0.08) TCGA-BH-A18P-01 15 43622180 43622180 C T LCMT2 Missense_Mutation p.E170K 0.36 tolerated(0.26) benign(0.068) TCGA-BH-A18P-01 15 45440507 45440507 G A DUOX1 Missense_Mutation p.A894T 0.42 tolerated(0.57) benign(0.001) TCGA-BH-A18P-01 15 49935606 49935606 C T DTWD1 Missense_Mutation p.S249F 0.09 deleterious(0) probably_damaging(0.992) TCGA-BH-A18P-01 15 54307326 54307326 G T UNC13C Missense_Mutation p.Q742H 0.40 tolerated_low_confidence(0.19) benign(0.002) TCGA-BH-A18P-01 15 69548380 69548380 C G GLCE Missense_Mutation p.Q79E 0.20 tolerated_low_confidence(0.45) benign(0.01) TCGA-BH-A18P-01 15 73428332 73428332 G A NEO1 Missense_Mutation p.E327K 0.19 tolerated(0.2) benign(0.001) TCGA-BH-A18P-01 15 93616322 93616322 C G RGMA Intron 0.27 TCGA-BH-A18P-01 15 93616893 93616893 C T RGMA Intron 0.15 TCGA-BH-A18P-01 16 12059075 12059075 C G TNFRSF17 5'UTR 0.32 TCGA-BH-A18P-01 16 15135525 15135525 C G NTAN1 Missense_Mutation p.D148H 0.16 tolerated(0.77) benign(0.318) TCGA-BH-A18P-01 16 15728701 15728701 G A KIAA0430 Silent p.L307L 0.21 TCGA-BH-A18P-01 16 19467879 19467879 C T TMC5 Intron 0.10 TCGA-BH-A18P-01 16 21812131 21812131 G C RRN3P1 RNA 0.23 TCGA-BH-A18P-01 16 23388694 23388694 C T SCNN1B Missense_Mutation p.S464F 0.14 deleterious(0.02) probably_damaging(1) TCGA-BH-A18P-01 16 24372874 24372874 C T CACNG3 Missense_Mutation p.S213L 0.17 tolerated(0.62) benign(0.109) TCGA-BH-A18P-01 16 25189433 25189433 C T LCMT1 3'UTR 0.06 TCGA-BH-A18P-01 16 28602948 28602948 C T CCDC101 Missense_Mutation p.S268F 0.40 deleterious(0.04) benign(0.074) TCGA-BH-A18P-01 16 29675524 29675524 G T SPN Nonsense_Mutation p.E159* 0.17 TCGA-BH-A18P-01 16 4404945 4404945 G A CORO7 3'UTR 0.42 TCGA-BH-A18P-01 16 4484516 4484516 C T DNAJA3 Nonsense_Mutation p.Q115* 0.23 TCGA-BH-A18P-01 16 50341017 50341017 C G ADCY7 Missense_Mutation p.I603M 0.33 deleterious(0) benign(0.352) TCGA-BH-A18P-01 16 5075523 5075523 C G NAGPA Missense_Mutation p.E502Q 0.14 possibly_damaging(0.475) TCGA-BH-A18P-01 16 53337714 53337714 G A CHD9 Silent p.R1932R 0.38 TCGA-BH-A18P-01 16 55515747 55515747 C T MMP2 Intron 0.34 TCGA-BH-A18P-01 16 57760057 57760057 G A CCDC135 Silent p.A612A 0.57 TCGA-BH-A18P-01 16 68772257 68772257 A - CDH1 Frame_Shift_Del p.S36Afs*20 0.64 TCGA-BH-A18P-01 16 77859274 77859274 C T VAT1L Silent p.F165F 0.37 TCGA-BH-A18P-01 16 89809343 89809343 G A FANCA Silent p.F1210F 0.39 TCGA-BH-A18P-01 17 29221881 29221881 C G ATAD5 Missense_Mutation p.L1829V 0.25 deleterious(0) probably_damaging(0.998) TCGA-BH-A18P-01 17 30500868 30500868 G C RHOT1 Missense_Mutation p.E39Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-BH-A18P-01 17 30551656 30551656 C G RHOT1 Silent p.L660L 0.28 TCGA-BH-A18P-01 17 3119721 3119721 C T OR1A1 Silent p.D269D 0.48 TCGA-BH-A18P-01 17 37054741 37054741 G A LASP1 Missense_Mutation p.R109K 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-BH-A18P-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.68 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 17 38421179 38421179 C A WIPF2 Missense_Mutation p.P251T 0.11 deleterious(0) possibly_damaging(0.573) TCGA-BH-A18P-01 17 38421273 38421273 C G WIPF2 Missense_Mutation p.S282C 0.13 deleterious(0) possibly_damaging(0.863) TCGA-BH-A18P-01 17 3981281 3981281 G A ZZEF1 Missense_Mutation p.S962F 0.30 deleterious(0) benign(0.076) TCGA-BH-A18P-01 17 54940238 54940238 C G DGKE 3'UTR 0.12 TCGA-BH-A18P-01 17 56435317 56435317 G A RNF43 Missense_Mutation p.S607L 0.24 tolerated_low_confidence(0.09) benign(0.002) TCGA-BH-A18P-01 17 70118894 70118894 G T SOX9 Nonsense_Mutation p.E156* 0.43 TCGA-BH-A18P-01 17 74076919 74076919 C T ZACN Intron 0.35 TCGA-BH-A18P-01 17 74076966 74076966 C A ZACN Intron 0.28 TCGA-BH-A18P-01 17 74154505 74154505 G A RNF157 Missense_Mutation p.S461F 0.29 deleterious_low_confidence(0.03) benign(0.187) TCGA-BH-A18P-01 17 74623561 74623561 C G ST6GALNAC1 Missense_Mutation p.Q312H 0.25 benign(0.098) TCGA-BH-A18P-01 17 80441612 80441612 G A NARF Missense_Mutation p.E264K 0.24 deleterious(0.03) possibly_damaging(0.788) TCGA-BH-A18P-01 17 80583301 80583301 G A WDR45B Nonsense_Mutation p.Q131* 0.24 TCGA-BH-A18P-01 18 11886744 11886744 G A MPPE1 Silent p.L238L 0.38 TCGA-BH-A18P-01 18 14850226 14850226 C G ANKRD30B Missense_Mutation p.Q1018E 0.46 tolerated(0.07) possibly_damaging(0.764) TCGA-BH-A18P-01 18 19146114 19146114 C A ESCO1 Missense_Mutation p.D567Y 0.17 deleterious(0) possibly_damaging(0.519) TCGA-BH-A18P-01 18 29848311 29848311 C T GAREM Silent p.Q718Q 0.18 TCGA-BH-A18P-01 18 44173590 44173590 G A LOXHD1 Silent p.F468F 0.11 TCGA-BH-A18P-01 18 48452266 48452266 G C ME2 Missense_Mutation p.E438Q 0.17 tolerated(0.34) benign(0.013) TCGA-BH-A18P-01 18 54606599 54606599 C T WDR7 Nonsense_Mutation p.Q1347* 0.20 TCGA-BH-A18P-01 18 55020080 55020080 G A ST8SIA3 Translation_Start_Site p.M1? 0.28 benign(0.107) TCGA-BH-A18P-01 19 10870471 10870471 C T DNM2 Silent p.L73L 0.21 TCGA-BH-A18P-01 19 11548705 11548705 G C PRKCSH Missense_Mutation p.A69P 0.58 deleterious(0) probably_damaging(0.995) TCGA-BH-A18P-01 19 13041152 13041152 C G FARSA Missense_Mutation p.D130H 0.18 deleterious(0.02) benign(0.131) TCGA-BH-A18P-01 19 14629014 14629014 C G DNAJB1 Missense_Mutation p.E50Q 0.30 deleterious(0) probably_damaging(0.986) TCGA-BH-A18P-01 19 15563564 15563564 G T RASAL3 Silent p.L911L 0.22 TCGA-BH-A18P-01 19 1783041 1783041 T C ATP8B3 Missense_Mutation p.K1297E 0.46 tolerated(0.18) benign(0.003) TCGA-BH-A18P-01 19 19757018 19757018 C T ATP13A1 Missense_Mutation p.E1082K 0.21 tolerated(0.95) benign(0.001) TCGA-BH-A18P-01 19 20229984 20229984 G C ZNF90 Missense_Mutation p.E541Q 0.25 tolerated(0.08) benign(0.099) TCGA-BH-A18P-01 19 23836556 23836556 C G ZNF675 Missense_Mutation p.E393D 0.25 deleterious(0.02) benign(0.145) TCGA-BH-A18P-01 19 37368413 37368413 G C ZNF345 Missense_Mutation p.E227D 0.28 deleterious(0.03) benign(0.262) TCGA-BH-A18P-01 19 3750636 3750636 C T TJP3 Missense_Mutation p.S914F 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 19 37676695 37676695 C G ZNF585B Missense_Mutation p.E582Q 0.18 tolerated(0.37) probably_damaging(0.997) TCGA-BH-A18P-01 19 38794918 38794918 G A C19orf33 Missense_Mutation p.G6E 0.21 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-BH-A18P-01 19 39575895 39575895 C T PAPL 5'UTR 0.25 TCGA-BH-A18P-01 19 39980580 39980580 G C TIMM50 3'Flank 0.25 TCGA-BH-A18P-01 19 4175836 4175836 C T SIRT6 Intron 0.20 TCGA-BH-A18P-01 19 4186270 4186270 G T ANKRD24 Splice_Site 0.21 TCGA-BH-A18P-01 19 4292689 4292689 G A TMIGD2 Silent p.P252P 0.42 TCGA-BH-A18P-01 19 4325220 4325220 G C STAP2 Silent p.P355P 0.21 TCGA-BH-A18P-01 19 43433598 43433598 G C PSG7 Silent p.L235L 0.21 TCGA-BH-A18P-01 19 44079628 44079628 C T XRCC1 5'UTR 0.17 TCGA-BH-A18P-01 19 44512960 44512960 G A ZNF230 Missense_Mutation p.D12N 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 19 47201003 47201003 T A PRKD2 Missense_Mutation p.N409I 0.26 deleterious(0) possibly_damaging(0.59) TCGA-BH-A18P-01 19 48643316 48643316 G A LIG1 Silent p.L333L 0.23 TCGA-BH-A18P-01 19 52448430 52448430 G A ZNF613 Missense_Mutation p.E432K 0.24 deleterious(0.04) benign(0.104) TCGA-BH-A18P-01 19 53612832 53612832 C T ZNF415 Missense_Mutation p.E156K 0.17 tolerated(0.3) benign(0) TCGA-BH-A18P-01 19 53857139 53857139 C T ZNF845 3'UTR 0.24 TCGA-BH-A18P-01 19 53912823 53912823 C G ZNF765 3'UTR 0.22 TCGA-BH-A18P-01 19 54407909 54407909 C T PRKCG Silent p.D559D 0.46 TCGA-BH-A18P-01 19 54744945 54744945 C T LILRA6 Silent p.Q239Q 0.08 TCGA-BH-A18P-01 19 57325872 57325872 G T PEG3 Missense_Mutation p.S1313Y 0.25 deleterious(0.03) benign(0.222) TCGA-BH-A18P-01 19 57327380 57327380 G A PEG3 Silent p.F810F 0.19 TCGA-BH-A18P-01 19 5831448 5831448 G A FUT6 3'UTR 0.25 TCGA-BH-A18P-01 19 58578710 58578710 C T ZNF135 Silent p.I310I 0.22 TCGA-BH-A18P-01 19 58773061 58773061 C T ZNF544 Silent p.F363F 0.37 TCGA-BH-A18P-01 19 7682957 7682957 G T CAMSAP3 3'UTR 0.12 TCGA-BH-A18P-01 19 9045834 9045834 C T MUC16 Missense_Mutation p.E11933K 0.21 benign(0.203) TCGA-BH-A18P-01 19 9075373 9075373 C T MUC16 Missense_Mutation p.D4025N 0.21 unknown(0) TCGA-BH-A18P-01 1 100185140 100185140 G A FRRS1 Missense_Mutation p.S357F 0.26 tolerated(0.7) benign(0.005) TCGA-BH-A18P-01 1 110280959 110280959 C T GSTM3 Silent p.K73K 0.22 TCGA-BH-A18P-01 1 150255964 150255964 G C C1orf51 Missense_Mutation p.R96T 0.21 tolerated(0.1) possibly_damaging(0.747) TCGA-BH-A18P-01 1 150483960 150483960 G A ECM1 Missense_Mutation p.E273K 0.08 tolerated(0.08) benign(0.212) TCGA-BH-A18P-01 1 153955103 153955103 T C RAB13 Intron 0.24 TCGA-BH-A18P-01 1 154841877 154841877 G A KCNN3 Silent p.L188L 0.10 TCGA-BH-A18P-01 1 155257739 155257739 G A HCN3 Missense_Mutation p.E604K 0.16 tolerated_low_confidence(0.38) benign(0.277) TCGA-BH-A18P-01 1 155294933 155294933 C T RUSC1 Silent p.I499I 0.13 TCGA-BH-A18P-01 1 155314064 155314064 C G ASH1L Missense_Mutation p.E2631Q 0.03 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-BH-A18P-01 1 156348066 156348066 G A RHBG Missense_Mutation p.M183I 0.07 tolerated(0.16) benign(0.015) TCGA-BH-A18P-01 1 156640299 156640299 C A NES Silent p.P1227P 0.19 TCGA-BH-A18P-01 1 156699007 156699007 C G RRNAD1 Missense_Mutation p.I37M 0.10 deleterious(0) possibly_damaging(0.84) TCGA-BH-A18P-01 1 1572319 1572319 G C CDK11B Silent p.A583A 0.29 TCGA-BH-A18P-01 1 15767045 15767045 G C CTRC Missense_Mutation p.L63F 0.21 deleterious(0) probably_damaging(0.996) TCGA-BH-A18P-01 1 158152865 158152865 G A CD1D Missense_Mutation p.V269M 0.12 deleterious(0.01) probably_damaging(1) TCGA-BH-A18P-01 1 160709083 160709083 G C SLAMF7 5'UTR 0.27 TCGA-BH-A18P-01 1 1647791 1647791 C T CDK11A Missense_Mutation p.R161K 0.16 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-BH-A18P-01 1 169102038 169102038 C G NME7 Missense_Mutation p.K372N 0.13 tolerated(0.2) benign(0.119) TCGA-BH-A18P-01 1 16912104 16912104 C G NBPF1 Missense_Mutation p.E290Q 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-BH-A18P-01 1 16918429 16918429 C T NBPF1 Missense_Mutation p.E30K 0.06 tolerated(0.47) possibly_damaging(0.486) TCGA-BH-A18P-01 1 173176307 173176307 C T TNFSF4 Silent p.R3R 0.10 TCGA-BH-A18P-01 1 173552741 173552741 C T SLC9C2 Missense_Mutation p.D182N 0.08 tolerated(0.36) probably_damaging(0.999) TCGA-BH-A18P-01 1 179095776 179095776 C T ABL2 Silent p.Q141Q 0.36 TCGA-BH-A18P-01 1 179632576 179632576 G C TDRD5 Missense_Mutation p.E867Q 0.15 tolerated(0.14) benign(0.168) TCGA-BH-A18P-01 1 197071299 197071299 G A ASPM Missense_Mutation p.S2361F 0.38 deleterious(0) probably_damaging(0.984) TCGA-BH-A18P-01 1 198711494 198711494 G A PTPRC Missense_Mutation p.E899K 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A18P-01 1 204587427 204587427 C T LRRN2 Missense_Mutation p.R565Q 0.41 tolerated(0.27) benign(0.001) TCGA-BH-A18P-01 1 205779276 205779276 G A SLC41A1 Silent p.I98I 0.17 TCGA-BH-A18P-01 1 207245843 207245843 C T PFKFB2 3'UTR 0.09 TCGA-BH-A18P-01 1 209790817 209790817 C T LAMB3 Missense_Mutation p.E1056K 0.14 tolerated(0.27) benign(0.01) TCGA-BH-A18P-01 1 214170934 214170934 G A PROX1 Silent p.L352L 0.09 TCGA-BH-A18P-01 1 224922353 224922353 G C CNIH3 Missense_Mutation p.E134Q 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 1 23418627 23418627 C T LUZP1 Missense_Mutation p.D710N 0.23 tolerated(1) benign(0.002) TCGA-BH-A18P-01 1 248813395 248813395 G C OR2T27 Missense_Mutation p.S264C 0.12 deleterious(0) probably_damaging(0.987) TCGA-BH-A18P-01 1 32090605 32090605 G A HCRTR1 Missense_Mutation p.G325R 0.29 deleterious(0.05) benign(0.174) TCGA-BH-A18P-01 1 33834190 33834190 C G PHC2 Missense_Mutation p.V204L 0.44 tolerated(0.09) possibly_damaging(0.712) TCGA-BH-A18P-01 1 43892993 43892993 C G SZT2 Missense_Mutation p.Q1102E 0.22 tolerated(0.32) benign(0.014) TCGA-BH-A18P-01 1 6313985 6313985 G A GPR153 Silent p.I193I 0.22 TCGA-BH-A18P-01 1 7309644 7309644 G A CAMTA1 Silent p.T132T 0.22 TCGA-BH-A18P-01 1 9995675 9995675 C G LZIC Missense_Mutation p.D38H 0.03 deleterious(0) probably_damaging(0.961) TCGA-BH-A18P-01 20 25229006 25229006 C T PYGB Silent p.L64L 0.27 TCGA-BH-A18P-01 20 30064441 30064441 G A REM1 Missense_Mutation p.D65N 0.25 tolerated(0.72) benign(0.001) TCGA-BH-A18P-01 20 30898414 30898414 C T KIF3B Silent p.V278V 0.19 TCGA-BH-A18P-01 20 34241075 34241075 G A RBM12 Missense_Mutation p.P724S 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-BH-A18P-01 20 3541448 3541448 C G ATRN Missense_Mutation p.S448C 0.20 deleterious(0) probably_damaging(0.984) TCGA-BH-A18P-01 20 37117154 37117154 G A RALGAPB Missense_Mutation p.E27K 0.19 tolerated(0.75) benign(0.046) TCGA-BH-A18P-01 20 42195143 42195143 C G SGK2 Missense_Mutation p.S63C 0.21 deleterious(0.04) possibly_damaging(0.524) TCGA-BH-A18P-01 20 44279195 44279195 G C WFDC11 Missense_Mutation p.F15L 0.18 tolerated(0.34) benign(0.01) TCGA-BH-A18P-01 20 44828148 44828148 G T CDH22 Missense_Mutation p.A446E 0.38 tolerated(0.4) benign(0.035) TCGA-BH-A18P-01 20 45169890 45169890 G A OCSTAMP 3'UTR 0.35 TCGA-BH-A18P-01 20 61340967 61340967 C T NTSR1 Silent p.F136F 0.25 TCGA-BH-A18P-01 21 33732208 33732208 G C URB1 Missense_Mutation p.S589C 0.43 deleterious(0.02) possibly_damaging(0.873) TCGA-BH-A18P-01 21 38884772 38884772 G C DYRK1A Missense_Mutation p.D744H 0.20 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-BH-A18P-01 21 47549150 47549150 C G COL6A2 Intron 0.15 TCGA-BH-A18P-01 22 30722713 30722713 C T TBC1D10A Missense_Mutation p.R53H 0.21 deleterious(0.03) benign(0.006) TCGA-BH-A18P-01 22 36031017 36031017 G A AL049747.1 Missense_Mutation p.L4F 0.25 unknown(0) TCGA-BH-A18P-01 22 37325762 37325762 C T CSF2RB Nonsense_Mutation p.R211* 0.16 TCGA-BH-A18P-01 22 38165326 38165326 C T TRIOBP Nonsense_Mutation p.Q2265* 0.16 TCGA-BH-A18P-01 22 41677550 41677550 G C RANGAP1 5'UTR 0.33 TCGA-BH-A18P-01 22 50512736 50512736 G C MLC1 Missense_Mutation p.S208C 0.13 tolerated_low_confidence(0.07) benign(0.02) TCGA-BH-A18P-01 22 50961305 50961305 G A NCAPH2 Missense_Mutation p.R495H 0.14 tolerated(0.13) benign(0.112) TCGA-BH-A18P-01 2 11261043 11261043 C T AC062028.1 RNA 0.23 TCGA-BH-A18P-01 2 128389200 128389200 C A MYO7B Nonsense_Mutation p.Y1681* 0.40 TCGA-BH-A18P-01 2 158142577 158142577 C T GALNT5 Missense_Mutation p.R558W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BH-A18P-01 2 159537087 159537087 G A PKP4 Silent p.Q1159Q 0.16 TCGA-BH-A18P-01 2 16082186 16082186 G A MYCN 5'UTR 0.50 TCGA-BH-A18P-01 2 163044822 163044822 C T FAP Nonsense_Mutation p.W557* 0.18 TCGA-BH-A18P-01 2 1637864 1637864 G A PXDN 3'UTR 0.40 TCGA-BH-A18P-01 2 167760155 167760155 C T XIRP2 Nonsense_Mutation p.Q55* 0.19 TCGA-BH-A18P-01 2 171356282 171356282 G A MYO3B Missense_Mutation p.E1085K 0.18 tolerated(0.31) benign(0.005) TCGA-BH-A18P-01 2 171356283 171356283 A T MYO3B Missense_Mutation p.E1085V 0.17 tolerated(0.09) benign(0.014) TCGA-BH-A18P-01 2 172848111 172848111 G C HAT1 Missense_Mutation p.D369H 0.15 tolerated(0.08) benign(0.234) TCGA-BH-A18P-01 2 179483183 179483183 C A TTN Nonsense_Mutation p.E15668* 0.20 TCGA-BH-A18P-01 2 179483357 179483357 C G TTN Missense_Mutation p.Q15640H 0.11 TCGA-BH-A18P-01 2 179613239 179613239 G C TTN Intron 0.47 TCGA-BH-A18P-01 2 179640575 179640575 C G TTN Missense_Mutation p.E2006Q 0.20 TCGA-BH-A18P-01 2 191760405 191760405 C T GLS Nonsense_Mutation p.Q187* 0.15 TCGA-BH-A18P-01 2 203995183 203995183 G C NBEAL1 Missense_Mutation p.R1154T 0.14 deleterious(0.04) possibly_damaging(0.517) TCGA-BH-A18P-01 2 207170370 207170370 C T ZDBF2 Missense_Mutation p.S373L 0.33 tolerated(0.08) possibly_damaging(0.693) TCGA-BH-A18P-01 2 207583057 207583057 G A DYTN 5'UTR 0.15 TCGA-BH-A18P-01 2 21242743 21242743 C G APOB Missense_Mutation p.E951Q 0.20 probably_damaging(0.991) TCGA-BH-A18P-01 2 215815648 215815648 C G ABCA12 Missense_Mutation p.K2269N 0.18 tolerated(0.17) benign(0.005) TCGA-BH-A18P-01 2 220032957 220032957 G A SLC23A3 Missense_Mutation p.S261L 0.43 tolerated(0.67) benign(0.06) TCGA-BH-A18P-01 2 233633333 233633333 G C KCNJ13 Silent p.L217L 0.18 TCGA-BH-A18P-01 2 237374267 237374267 C T IQCA1 Silent p.K269K 0.42 TCGA-BH-A18P-01 2 239057647 239057647 G A KLHL30 Splice_Site p.X447_splice 0.11 TCGA-BH-A18P-01 2 27449092 27449092 C T CAD Nonsense_Mutation p.Q646* 0.45 TCGA-BH-A18P-01 2 33752323 33752323 G A RASGRP3 Silent p.L309L 0.09 TCGA-BH-A18P-01 2 44202316 44202316 C G LRPPRC Missense_Mutation p.D260H 0.19 tolerated(0.06) possibly_damaging(0.653) TCGA-BH-A18P-01 2 49195939 49195939 T C FSHR Missense_Mutation p.N251S 0.38 tolerated(0.98) benign(0) TCGA-BH-A18P-01 2 55591121 55591121 C G CCDC88A Missense_Mutation p.D151H 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-BH-A18P-01 2 64148438 64148438 C G VPS54 Missense_Mutation p.E591Q 0.15 deleterious(0.01) possibly_damaging(0.625) TCGA-BH-A18P-01 2 68873196 68873196 C T PROKR1 Silent p.F81F 0.13 TCGA-BH-A18P-01 2 70033627 70033627 G A ANXA4 Missense_Mutation p.M101I 0.21 tolerated(0.76) benign(0.007) TCGA-BH-A18P-01 2 84784983 84784983 C A DNAH6 Missense_Mutation p.T576N 0.44 tolerated(0.3) benign(0.04) TCGA-BH-A18P-01 2 86258620 86258620 C G POLR1A Missense_Mutation p.E1471Q 0.18 tolerated(0.28) benign(0.033) TCGA-BH-A18P-01 2 9000774 9000774 G C MBOAT2 Missense_Mutation p.L436V 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A18P-01 3 10140702 10140702 G A FANCD2 3'UTR 0.21 TCGA-BH-A18P-01 3 101504258 101504258 G A NXPE3 5'UTR 0.33 TCGA-BH-A18P-01 3 121228970 121228970 G A POLQ Nonsense_Mutation p.Q578* 0.20 TCGA-BH-A18P-01 3 123652596 123652596 C T CCDC14 Silent p.L457L 0.05 TCGA-BH-A18P-01 3 135721362 135721362 C A PPP2R3A Nonsense_Mutation p.S341* 0.06 TCGA-BH-A18P-01 3 139244741 139244741 C T RBP1 Intron 0.18 TCGA-BH-A18P-01 3 139258551 139258551 G A RBP1 Missense_Mutation p.P4S 0.54 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-BH-A18P-01 3 140695209 140695209 C T SLC25A36 Silent p.L284L 0.19 TCGA-BH-A18P-01 3 148559668 148559668 G A CPB1 Missense_Mutation p.R178K 0.18 deleterious(0) probably_damaging(0.999) TCGA-BH-A18P-01 3 151461885 151461885 G C AADACL2 Missense_Mutation p.Q122H 0.10 tolerated(0.15) benign(0.016) TCGA-BH-A18P-01 3 156422677 156422677 G C TIPARP Missense_Mutation p.K577N 0.24 tolerated(0.07) possibly_damaging(0.856) TCGA-BH-A18P-01 3 160122246 160122246 G A SMC4 Missense_Mutation p.R214Q 0.23 deleterious(0) benign(0.426) TCGA-BH-A18P-01 3 176769295 176769296 - TA TBL1XR1 Frame_Shift_Ins p.A142* 0.32 TCGA-BH-A18P-01 3 178960618 178960618 G C KCNMB3 3'UTR 0.14 TCGA-BH-A18P-01 3 184019425 184019425 C T PSMD2 Missense_Mutation p.S153L 0.29 tolerated(0.08) possibly_damaging(0.754) TCGA-BH-A18P-01 3 197792678 197792678 C T ANKRD18DP Splice_Site 0.12 TCGA-BH-A18P-01 3 30045390 30045390 G C RBMS3 3'UTR 0.30 TCGA-BH-A18P-01 3 32495889 32495889 C T CMTM7 3'UTR 0.18 TCGA-BH-A18P-01 3 33420176 33420176 G C FBXL2 Splice_Site p.X299_splice 0.24 TCGA-BH-A18P-01 3 38627460 38627460 C T SCN5A Missense_Mutation p.G837R 0.20 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 3 42448783 42448783 G A LYZL4 5'UTR 0.15 TCGA-BH-A18P-01 3 46007876 46007876 G C FYCO1 Missense_Mutation p.Q984E 0.22 tolerated(0.54) benign(0.156) TCGA-BH-A18P-01 3 4887973 4887973 G C ITPR1 3'UTR 0.18 TCGA-BH-A18P-01 3 62477092 62477092 C G CADPS Missense_Mutation p.R983T 0.19 deleterious(0) benign(0.227) TCGA-BH-A18P-01 4 123201085 123201085 C T KIAA1109 Missense_Mutation p.S2916F 0.18 probably_damaging(0.996) TCGA-BH-A18P-01 4 138451272 138451272 G C PCDH18 Missense_Mutation p.I657M 0.19 tolerated(0.12) benign(0.01) TCGA-BH-A18P-01 4 152056281 152056281 C T SH3D19 Missense_Mutation p.D554N 0.15 tolerated(0.14) probably_damaging(0.992) TCGA-BH-A18P-01 4 154544085 154544085 G C KIAA0922 Missense_Mutation p.D1299H 0.22 deleterious(0.01) probably_damaging(0.924) TCGA-BH-A18P-01 4 156849527 156849527 C T CTSO Missense_Mutation p.D298N 0.39 tolerated(0.08) benign(0.139) TCGA-BH-A18P-01 4 183635307 183635307 G A TENM3 Silent p.V763V 0.17 TCGA-BH-A18P-01 4 25677836 25677836 G A SLC34A2 Missense_Mutation p.R513H 0.35 tolerated(0.19) benign(0.075) TCGA-BH-A18P-01 4 66231763 66231763 C T EPHA5 Missense_Mutation p.G646E 0.18 tolerated(0.15) possibly_damaging(0.573) TCGA-BH-A18P-01 4 69536210 69536210 G T UGT2B15 Missense_Mutation p.L43M 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A18P-01 4 70070294 70070294 G A UGT2B11 Silent p.I388I 0.11 TCGA-BH-A18P-01 4 76415808 76415808 G C RCHY1 Missense_Mutation p.Q214E 0.18 tolerated(0.41) benign(0.014) TCGA-BH-A18P-01 4 76888470 76888470 G C SDAD1 Missense_Mutation p.F335L 0.18 tolerated(0.05) benign(0.383) TCGA-BH-A18P-01 5 102519057 102519057 C T PPIP5K2 Silent p.V1015V 0.17 TCGA-BH-A18P-01 5 102519059 102519059 C T PPIP5K2 Missense_Mutation p.S1016F 0.16 deleterious_low_confidence(0.02) benign(0.015) TCGA-BH-A18P-01 5 115249072 115249072 G A AP3S1 Missense_Mutation p.G156E 0.10 tolerated(0.26) benign(0.028) TCGA-BH-A18P-01 5 118464937 118464937 G A DMXL1 Silent p.L378L 0.21 TCGA-BH-A18P-01 5 118582789 118582789 G C DMXL1 Missense_Mutation p.E2987Q 0.15 tolerated(0.15) probably_damaging(0.999) TCGA-BH-A18P-01 5 118582887 118582887 G C DMXL1 Missense_Mutation p.L3019F 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.852) TCGA-BH-A18P-01 5 131924429 131924429 G C RAD50 Missense_Mutation p.D368H 0.05 tolerated(0.08) probably_damaging(0.94) TCGA-BH-A18P-01 5 139908070 139908070 C G ANKHD1 Missense_Mutation p.L1847V 0.21 probably_damaging(0.965) TCGA-BH-A18P-01 5 140037204 140037204 G T IK Silent p.L289L 0.29 TCGA-BH-A18P-01 5 140229695 140229695 G A PCDHA9 Missense_Mutation p.D539N 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.721) TCGA-BH-A18P-01 5 148417943 148417943 G A SH3TC2 Nonsense_Mutation p.Q306* 0.16 TCGA-BH-A18P-01 5 156936372 156936372 G C ADAM19 Missense_Mutation p.S281C 0.18 deleterious(0) probably_damaging(0.967) TCGA-BH-A18P-01 5 15937308 15937308 C T FBXL7 3'UTR 0.24 TCGA-BH-A18P-01 5 160059229 160059229 C T ATP10B Silent p.Q509Q 0.20 TCGA-BH-A18P-01 5 16670938 16670938 G C MYO10 Silent p.L1860L 0.36 TCGA-BH-A18P-01 5 170722917 170722917 G A RANBP17 Silent p.L1023L 0.18 TCGA-BH-A18P-01 5 176081937 176081937 C G TSPAN17 Silent p.L166L 0.25 TCGA-BH-A18P-01 5 179044636 179044636 G T HNRNPH1 Silent p.L312L 0.20 TCGA-BH-A18P-01 5 179078936 179078936 C T AC136604.1 Missense_Mutation p.S140F 0.18 deleterious(0) possibly_damaging(0.683) TCGA-BH-A18P-01 5 32364313 32364313 C T ZFR Silent p.L968L 0.16 TCGA-BH-A18P-01 5 35795829 35795829 G A SPEF2 Missense_Mutation p.E1588K 0.03 tolerated(0.07) benign(0.012) TCGA-BH-A18P-01 5 40854270 40854270 C T CARD6 Nonsense_Mutation p.Q946* 0.19 TCGA-BH-A18P-01 5 41382448 41382448 G A PLCXD3 Nonsense_Mutation p.R98* 0.22 TCGA-BH-A18P-01 5 56155605 56155605 C - MAP3K1 Frame_Shift_Del p.P233Qfs*30 0.46 TCGA-BH-A18P-01 5 66084606 66084606 C T MAST4 Missense_Mutation p.S209L 0.31 benign(0.062) TCGA-BH-A18P-01 5 67592087 67592087 G A PIK3R1 Missense_Mutation p.E635K 0.20 deleterious(0) probably_damaging(0.999) TCGA-BH-A18P-01 5 68410315 68410315 G A SLC30A5 Missense_Mutation p.D202N 0.19 deleterious(0) benign(0.116) TCGA-BH-A18P-01 5 99921891 99921891 A T FAM174A 3'UTR 0.49 TCGA-BH-A18P-01 6 111695851 111695851 C G REV3L Missense_Mutation p.G1236A 0.36 tolerated_low_confidence(0.71) benign(0.001) TCGA-BH-A18P-01 6 116381590 116381590 C T FRK 5'UTR 0.24 TCGA-BH-A18P-01 6 116446585 116446585 C T COL10A1 Missense_Mutation p.R24Q 0.12 tolerated_low_confidence(0.19) unknown(0) TCGA-BH-A18P-01 6 116938343 116938343 C G RSPH4A Nonsense_Mutation p.S186* 0.19 TCGA-BH-A18P-01 6 117846569 117846569 C T DCBLD1 Missense_Mutation p.S186F 0.20 tolerated(0.13) benign(0.033) TCGA-BH-A18P-01 6 118880195 118880195 C T PLN Silent p.L37L 0.04 TCGA-BH-A18P-01 6 132939037 132939037 C G TAAR2 Missense_Mutation p.R103T 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18P-01 6 136589421 136589421 G A BCLAF1 Missense_Mutation p.S759F 0.07 deleterious(0) possibly_damaging(0.683) TCGA-BH-A18P-01 6 14131891 14131891 C T CD83 Silent p.T98T 0.19 TCGA-BH-A18P-01 6 147684754 147684754 G C STXBP5 Silent p.S943S 0.13 TCGA-BH-A18P-01 6 150387087 150387087 C G ULBP3 Missense_Mutation p.Q100H 0.20 deleterious(0.03) possibly_damaging(0.832) TCGA-BH-A18P-01 6 152650988 152650988 C T SYNE1 Silent p.L4944L 0.16 TCGA-BH-A18P-01 6 159653669 159653669 G A FNDC1 Missense_Mutation p.D709N 0.28 tolerated_low_confidence(0.47) unknown(0) TCGA-BH-A18P-01 6 161514020 161514020 C G MAP3K4 Missense_Mutation p.Q1094E 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-BH-A18P-01 6 161514063 161514063 C T MAP3K4 Missense_Mutation p.S1108L 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-BH-A18P-01 6 168307891 168307891 C G MLLT4 Missense_Mutation p.S564C 0.21 tolerated(0.08) benign(0.005) TCGA-BH-A18P-01 6 24547206 24547206 C G KIAA0319 3'UTR 0.10 TCGA-BH-A18P-01 6 36447445 36447445 C G KCTD20 Silent p.L205L 0.14 TCGA-BH-A18P-01 6 52129354 52129354 C T MCM3 3'UTR 0.11 TCGA-BH-A18P-01 6 76024427 76024427 G C FILIP1 Missense_Mutation p.S374C 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-BH-A18P-01 6 76576321 76576321 G C MYO6 Missense_Mutation p.A585P 0.36 deleterious(0.04) unknown(0) TCGA-BH-A18P-01 6 78172401 78172401 C T HTR1B Silent p.L240L 0.21 TCGA-BH-A18P-01 6 90381945 90381945 C T MDN1 Missense_Mutation p.E4590K 0.22 possibly_damaging(0.905) TCGA-BH-A18P-01 7 103020959 103020959 C T SLC26A5 Missense_Mutation p.D518N 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-BH-A18P-01 7 107820851 107820851 C T NRCAM Silent p.Q889Q 0.15 TCGA-BH-A18P-01 7 108112685 108112685 C G PNPLA8 3'UTR 0.18 TCGA-BH-A18P-01 7 123324635 123324635 C G WASL Splice_Site p.X486_splice 0.16 TCGA-BH-A18P-01 7 132174147 132174147 G A PLXNA4 Silent p.F425F 0.16 TCGA-BH-A18P-01 7 134215444 134215444 G A AKR1B10 Missense_Mutation p.G39E 0.07 deleterious(0) possibly_damaging(0.669) TCGA-BH-A18P-01 7 138210052 138210052 G A TRIM24 Silent p.L277L 0.20 TCGA-BH-A18P-01 7 139288862 139288862 C G HIPK2 Missense_Mutation p.E740D 0.19 tolerated(0.99) benign(0.001) TCGA-BH-A18P-01 7 141705408 141705408 C T MGAM Silent p.I26I 0.17 TCGA-BH-A18P-01 7 151878971 151878971 C G KMT2C Missense_Mutation p.E1992Q 0.26 possibly_damaging(0.756) TCGA-BH-A18P-01 7 158560422 158560422 G C ESYT2 Missense_Mutation p.L331V 0.15 deleterious(0.01) possibly_damaging(0.891) TCGA-BH-A18P-01 7 21599382 21599382 G C DNAH11 Missense_Mutation p.R285T 0.20 benign(0.131) TCGA-BH-A18P-01 7 33035890 33035890 G C FKBP9 Silent p.L385L 0.20 TCGA-BH-A18P-01 7 45767779 45767779 C T SEPT7P2 Intron 0.23 TCGA-BH-A18P-01 7 48147085 48147085 C G UPP1 Missense_Mutation p.C258W 0.16 deleterious(0.02) probably_damaging(1) TCGA-BH-A18P-01 7 4946938 4946938 G C MMD2 3'UTR 0.44 TCGA-BH-A18P-01 7 69064930 69064930 C T AUTS2 Silent p.V97V 0.27 TCGA-BH-A18P-01 7 87258172 87258172 G A RUNDC3B Silent p.G11G 0.20 TCGA-BH-A18P-01 7 91709273 91709273 C T AKAP9 Missense_Mutation p.S2609L 0.11 possibly_damaging(0.487) TCGA-BH-A18P-01 7 96637011 96637011 G A DLX6 Silent p.K166K 0.19 TCGA-BH-A18P-01 8 11301672 11301672 G A FAM167A Silent p.L83L 0.17 TCGA-BH-A18P-01 8 113364680 113364680 C T CSMD3 Missense_Mutation p.V2074I 0.32 deleterious(0.04) possibly_damaging(0.792) TCGA-BH-A18P-01 8 144731998 144731998 C G ZNF623 5'UTR 0.16 TCGA-BH-A18P-01 8 144732325 144732325 C G ZNF623 Missense_Mutation p.Q95E 0.20 deleterious(0.05) benign(0.011) TCGA-BH-A18P-01 8 144732550 144732550 C T ZNF623 Nonsense_Mutation p.Q170* 0.19 TCGA-BH-A18P-01 8 145246704 145246704 C T MROH1 Silent p.L267L 0.13 TCGA-BH-A18P-01 8 145999827 145999827 C T ZNF34 Silent p.L169L 0.40 TCGA-BH-A18P-01 8 20107866 20107866 C T LZTS1 Silent p.Q386Q 0.19 TCGA-BH-A18P-01 8 23177557 23177557 C T LOXL2 Silent p.L437L 0.40 TCGA-BH-A18P-01 8 41798588 41798588 C G KAT6A Missense_Mutation p.K937N 0.47 benign(0.177) TCGA-BH-A18P-01 8 71069225 71069225 G A NCOA2 Nonsense_Mutation p.Q459* 0.19 TCGA-BH-A18P-01 8 98041678 98041678 G A CPQ Missense_Mutation p.E337K 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 9 116811020 116811020 G A ZNF618 Missense_Mutation p.D387N 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18P-01 9 120474783 120474783 C G TLR4 Nonsense_Mutation p.S126* 0.19 TCGA-BH-A18P-01 9 130540968 130540968 C T SH2D3C 5'UTR 0.14 TCGA-BH-A18P-01 9 130541006 130541006 C G SH2D3C 5'UTR 0.16 TCGA-BH-A18P-01 9 131023779 131023779 C A GOLGA2 Missense_Mutation p.G402V 0.14 tolerated(0.11) benign(0.022) TCGA-BH-A18P-01 9 132402823 132402823 C T ASB6 Missense_Mutation p.E98K 0.14 tolerated(0.22) probably_damaging(0.998) TCGA-BH-A18P-01 9 132637592 132637592 G A USP20 Silent p.K684K 0.17 TCGA-BH-A18P-01 9 35043842 35043842 G A C9orf131 Missense_Mutation p.D406N 0.26 tolerated(0.16) benign(0.009) TCGA-BH-A18P-01 9 37692653 37692653 G A FRMPD1 Silent p.E5E 0.20 TCGA-BH-A18P-01 9 75516128 75516128 G A ALDH1A1 Missense_Mutation p.S501L 0.21 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 X 10102535 10102535 C T WWC3 Missense_Mutation p.R888W 0.48 deleterious(0.01) benign(0.121) TCGA-BH-A18P-01 X 101098143 101098143 C T NXF5 5'UTR 0.05 TCGA-BH-A18P-01 X 108638635 108638635 G A GUCY2F Silent p.L787L 0.39 TCGA-BH-A18P-01 X 113965700 113965700 C T HTR2C Intron 0.24 TCGA-BH-A18P-01 X 119059227 119059227 G A NKAP Nonsense_Mutation p.R402* 0.41 TCGA-BH-A18P-01 X 122771967 122771967 G C THOC2 Missense_Mutation p.I616M 0.21 deleterious(0) probably_damaging(0.96) TCGA-BH-A18P-01 X 123556288 123556288 C T TENM1 Silent p.A1435A 0.25 TCGA-BH-A18P-01 X 123556368 123556368 G A TENM1 Missense_Mutation p.R1409C 0.46 deleterious(0) probably_damaging(0.961) TCGA-BH-A18P-01 X 135427024 135427024 A G GPR112 Missense_Mutation p.T387A 0.46 deleterious(0) benign(0.01) TCGA-BH-A18P-01 X 137717749 137717749 G A FGF13 Missense_Mutation p.S167L 0.45 deleterious(0) probably_damaging(1) TCGA-BH-A18P-01 X 13778539 13778539 C G OFD1 Missense_Mutation p.R654G 0.21 deleterious(0.03) benign(0.413) TCGA-BH-A18P-01 X 1508405 1508405 G A SLC25A6 Silent p.F109F 0.13 TCGA-BH-A18P-01 X 152686582 152686582 C T ZFP92 Silent p.F249F 0.32 TCGA-BH-A18P-01 X 153628919 153628919 G C RPL10 Silent p.V148V 0.22 TCGA-BH-A18P-01 X 21900634 21900634 C G MBTPS2 Missense_Mutation p.S474C 0.20 deleterious(0) probably_damaging(0.962) TCGA-BH-A18P-01 X 35966471 35966471 C G CXorf22 Silent p.L186L 0.22 TCGA-BH-A18P-01 X 36156072 36156072 C A CHDC2 Intron 0.15 TCGA-BH-A18P-01 X 38420832 38420832 G A TSPAN7 Silent p.V11V 0.19 TCGA-BH-A18P-01 X 47273004 47273004 C T ZNF157 3'UTR 0.21 TCGA-BH-A18P-01 X 48325629 48325629 G C SLC38A5 Intron 0.38 TCGA-BH-A18P-01 X 53644041 53644041 C A HUWE1 Missense_Mutation p.R616L 0.19 probably_damaging(1) TCGA-BH-A18P-01 X 67742612 67742612 C G YIPF6 Missense_Mutation p.Q149E 0.17 deleterious(0) probably_damaging(0.952) TCGA-BH-A18P-01 X 7023749 7023749 G A HDHD1 Silent p.V87V 0.19 TCGA-BH-A18P-01 X 79978166 79978166 C G BRWD3 Missense_Mutation p.D591H 0.18 deleterious(0) probably_damaging(0.99) TCGA-BH-A18Q-01 10 119017348 119017348 G A SLC18A2 Silent p.E312E 0.16 TCGA-BH-A18Q-01 10 76797815 76797815 C T DUPD1 Missense_Mutation p.V148I 0.23 deleterious(0) benign(0.145) TCGA-BH-A18Q-01 11 111166773 111166773 C A COLCA1 3'UTR 0.08 TCGA-BH-A18Q-01 11 16424260 16424260 A C SOX6 Intron 0.78 TCGA-BH-A18Q-01 11 60617842 60617842 G C CCDC86 3'UTR 0.45 TCGA-BH-A18Q-01 11 63665731 63665731 G C MARK2 Missense_Mutation p.V106L 0.37 tolerated(0.79) benign(0.001) TCGA-BH-A18Q-01 11 67431876 67431876 G T ALDH3B2 Missense_Mutation p.N288K 0.77 tolerated(0.35) benign(0.013) TCGA-BH-A18Q-01 11 76572075 76572075 G T ACER3 Missense_Mutation p.D19Y 0.75 deleterious(0) probably_damaging(0.993) TCGA-BH-A18Q-01 12 109617839 109617839 C A ACACB Missense_Mutation p.H589N 0.23 deleterious(0) probably_damaging(0.994) TCGA-BH-A18Q-01 12 121248621 121248621 C T SPPL3 Missense_Mutation p.G31D 0.75 deleterious(0) possibly_damaging(0.674) TCGA-BH-A18Q-01 12 4409184 4409184 G T CCND2 3'UTR 0.15 TCGA-BH-A18Q-01 12 49951310 49951310 T G KCNH3 Silent p.T942T 0.31 TCGA-BH-A18Q-01 12 52946574 52946574 T A KRT71 Silent p.V96V 0.05 TCGA-BH-A18Q-01 12 54756651 54756651 C G GPR84 Missense_Mutation p.A329P 0.53 deleterious(0.02) possibly_damaging(0.555) TCGA-BH-A18Q-01 12 7640285 7640285 G C CD163 Intron 0.13 TCGA-BH-A18Q-01 12 80935447 80935447 C G PTPRQ Missense_Mutation p.L1086V 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-BH-A18Q-01 13 33679648 33679648 C - STARD13 3'UTR 0.40 TCGA-BH-A18Q-01 13 96536771 96536771 C G UGGT2 Missense_Mutation p.D1068H 0.81 deleterious(0) probably_damaging(1) TCGA-BH-A18Q-01 14 81745043 81745043 C G STON2 Missense_Mutation p.M204I 0.29 deleterious_low_confidence(0) benign(0.153) TCGA-BH-A18Q-01 15 39880727 39880727 T A THBS1 Missense_Mutation p.I491N 0.35 deleterious(0) possibly_damaging(0.457) TCGA-BH-A18Q-01 15 42192879 42192879 G A EHD4 Silent p.P530P 0.60 TCGA-BH-A18Q-01 16 1812723 1812723 T C MAPK8IP3 Missense_Mutation p.I572T 0.39 deleterious(0) probably_damaging(0.976) TCGA-BH-A18Q-01 16 48173212 48173212 C T ABCC12 Silent p.L231L 0.20 TCGA-BH-A18Q-01 16 72198814 72198814 G A PMFBP1 Missense_Mutation p.A5V 0.28 tolerated_low_confidence(1) benign(0.018) TCGA-BH-A18Q-01 16 89293296 89293296 G C ZNF778 Missense_Mutation p.L172F 0.40 tolerated(0.67) possibly_damaging(0.852) TCGA-BH-A18Q-01 17 46136186 46136186 C T NFE2L1 Missense_Mutation p.S501F 0.72 tolerated(0.24) probably_damaging(0.994) TCGA-BH-A18Q-01 17 6337305 6337305 C A AIPL1 Missense_Mutation p.E70D 0.35 tolerated(0.12) benign(0.162) TCGA-BH-A18Q-01 17 73502696 73502696 C A CASKIN2 Missense_Mutation p.L195F 0.21 deleterious(0) probably_damaging(0.998) TCGA-BH-A18Q-01 17 74900382 74900395 GTGGACGGCACCGA - MGAT5B Frame_Shift_Del p.D202Lfs*8 0.14 TCGA-BH-A18Q-01 17 7579458 7579459 - TGCA TP53 Frame_Shift_Ins p.P77Cfs*73 0.54 TCGA-BH-A18Q-01 17 76492022 76492022 G A DNAH17 Silent p.F1932F 0.19 TCGA-BH-A18Q-01 17 8783817 8783817 C A PIK3R5 3'UTR 0.82 TCGA-BH-A18Q-01 18 12452354 12452354 T C SPIRE1 Missense_Mutation p.I638V 0.47 tolerated(1) probably_damaging(0.992) TCGA-BH-A18Q-01 18 67992965 67992965 T A SOCS6 Missense_Mutation p.V354D 0.43 deleterious(0.01) probably_damaging(0.953) TCGA-BH-A18Q-01 18 77037109 77037109 G C ATP9B Missense_Mutation p.D442H 0.68 deleterious(0) probably_damaging(0.996) TCGA-BH-A18Q-01 19 10794838 10794838 A G ILF3 Intron 0.42 TCGA-BH-A18Q-01 19 11356505 11356517 CATCATACAGAGC - DOCK6 Frame_Shift_Del p.A282Cfs*15 0.20 TCGA-BH-A18Q-01 19 14883280 14883280 C G EMR2 Missense_Mutation p.V77L 0.21 tolerated(0.18) benign(0.007) TCGA-BH-A18Q-01 19 15770255 15770255 C A CYP4F3 3'UTR 0.10 TCGA-BH-A18Q-01 19 16982088 16982097 GGAGCCTGCT - SIN3B Frame_Shift_Del p.S857Rfs*42 0.14 TCGA-BH-A18Q-01 19 2151390 2151390 G T AP3D1 5'UTR 0.31 TCGA-BH-A18Q-01 19 40947491 40947491 G A SERTAD3 Missense_Mutation p.A166V 0.18 tolerated(0.39) benign(0.016) TCGA-BH-A18Q-01 19 57066120 57066120 C G ZFP28 Missense_Mutation p.Q656E 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-BH-A18Q-01 19 57286204 57286204 G T ZIM2 Nonsense_Mutation p.S479* 0.35 TCGA-BH-A18Q-01 1 152283132 152283132 C A FLG Silent p.V1410V 0.17 TCGA-BH-A18Q-01 1 157667333 157667333 T C FCRL3 Intron 0.15 TCGA-BH-A18Q-01 1 158390288 158390288 G A OR10K2 Silent p.Y123Y 0.08 TCGA-BH-A18Q-01 1 169511020 169511020 T C F5 Missense_Mutation p.N1103S 0.16 tolerated(0.42) benign(0.009) TCGA-BH-A18Q-01 1 183543637 183543637 C G NCF2 Silent p.A162A 0.13 TCGA-BH-A18Q-01 1 185815169 185815169 G C HMCN1 Missense_Mutation p.V94L 0.17 probably_damaging(0.935) TCGA-BH-A18Q-01 1 186135346 186135346 G T HMCN1 Missense_Mutation p.C5117F 0.53 benign(0.006) TCGA-BH-A18Q-01 1 203192689 203192689 G A CHIT1 Silent p.D138D 0.09 TCGA-BH-A18Q-01 1 204587204 204587204 G C LRRN2 Silent p.V639V 0.19 TCGA-BH-A18Q-01 1 222818914 222818914 G C MIA3 Missense_Mutation p.D1166H 0.44 deleterious(0) probably_damaging(0.935) TCGA-BH-A18Q-01 1 22835081 22835081 C G ZBTB40 Nonsense_Mutation p.S519* 0.48 TCGA-BH-A18Q-01 1 228559643 228559643 C A OBSCN Missense_Mutation p.P8012Q 0.19 possibly_damaging(0.858) TCGA-BH-A18Q-01 20 21687302 21687302 C A PAX1 Silent p.R171R 0.31 TCGA-BH-A18Q-01 20 34054871 34054871 C T CEP250 Silent p.F191F 0.19 TCGA-BH-A18Q-01 20 34241287 34241300 GGCATTCCTGGAAC - RBM12 Frame_Shift_Del p.V649Qfs*46 0.10 TCGA-BH-A18Q-01 21 47552440 47552440 G A COL6A2 Missense_Mutation p.D1012N 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A18Q-01 21 47841991 47841992 - CA PCNT Frame_Shift_Ins p.L2378Pfs*6 0.19 TCGA-BH-A18Q-01 21 47841994 47841994 C A PCNT Missense_Mutation p.P2379T 0.19 benign(0.043) TCGA-BH-A18Q-01 21 47841995 47841995 C A PCNT Missense_Mutation p.P2379Q 0.21 benign(0.003) TCGA-BH-A18Q-01 22 18020472 18020472 C A CECR2 Missense_Mutation p.P602T 0.35 deleterious(0.01) possibly_damaging(0.544) TCGA-BH-A18Q-01 22 24226533 24226533 G A SLC2A11 Missense_Mutation p.A410T 0.18 tolerated(0.22) benign(0.039) TCGA-BH-A18Q-01 22 50717396 50717396 C T PLXNB2 Silent p.P1478P 0.36 TCGA-BH-A18Q-01 2 109513664 109513664 G A EDAR Missense_Mutation p.P349L 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A18Q-01 2 148657335 148657335 T G ACVR2A Silent p.P132P 0.19 TCGA-BH-A18Q-01 2 183608386 183608386 C T DNAJC10 Missense_Mutation p.P418L 0.35 deleterious(0) benign(0.292) TCGA-BH-A18Q-01 2 27592918 27592918 G T EIF2B4 5'Flank 0.21 TCGA-BH-A18Q-01 2 99189391 99189391 G A INPP4A Splice_Site p.X882_splice 0.27 TCGA-BH-A18Q-01 3 114069805 114069805 T G ZBTB20 Missense_Mutation p.S374R 0.35 deleterious(0) probably_damaging(0.944) TCGA-BH-A18Q-01 3 164727132 164727132 C G SI Missense_Mutation p.E1372Q 0.20 tolerated(0.46) benign(0.052) TCGA-BH-A18Q-01 3 170715731 170715731 A C SLC2A2 Silent p.A512A 0.14 TCGA-BH-A18Q-01 3 190039816 190039816 C T CLDN1 Silent p.G60G 0.08 TCGA-BH-A18Q-01 3 194126488 194126514 CTGTTTTTATTTTAAGGAAGAGCAAAG - ATP13A3 3'UTR 0.14 TCGA-BH-A18Q-01 3 195511735 195511735 G A MUC4 Missense_Mutation p.T2239I 0.06 unknown(0) TCGA-BH-A18Q-01 3 41266593 41266593 G A CTNNB1 Silent p.Q130Q 0.36 TCGA-BH-A18Q-01 3 89478293 89478300 TGGTTCCT - EPHA3 Frame_Shift_Del p.S706* 0.62 TCGA-BH-A18Q-01 4 109767306 109767307 - T COL25A1 Frame_Shift_Ins p.P502Tfs*71 0.30 TCGA-BH-A18Q-01 4 62936563 62936563 C A LPHN3 Missense_Mutation p.N1449K 0.27 tolerated_low_confidence(0.07) benign(0.026) TCGA-BH-A18Q-01 4 7056404 7056404 C G TADA2B Missense_Mutation p.R296G 0.74 deleterious(0.02) benign(0.428) TCGA-BH-A18Q-01 5 101834402 101834402 C T SLCO6A1 Silent p.R49R 0.25 TCGA-BH-A18Q-01 5 126146015 126146015 G C LMNB1 Missense_Mutation p.E262D 0.47 tolerated(0.39) benign(0.029) TCGA-BH-A18Q-01 5 140712321 140712321 T A PCDHGA1 Silent p.T690T 0.13 TCGA-BH-A18Q-01 5 147665612 147665612 T C SPINK13 3'UTR 0.32 TCGA-BH-A18Q-01 5 149200117 149200117 A C PPARGC1B Missense_Mutation p.N67T 0.33 tolerated(0.22) benign(0.001) TCGA-BH-A18Q-01 5 33467826 33467826 C G TARS 3'UTR 0.54 TCGA-BH-A18Q-01 5 43298903 43298903 C T HMGCS1 Silent p.K55K 0.12 TCGA-BH-A18Q-01 5 54965418 54965418 T C SLC38A9 Silent p.T133T 0.28 TCGA-BH-A18Q-01 6 100368976 100368976 T C MCHR2 Missense_Mutation p.Y288C 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A18Q-01 6 116443059 116443059 G A COL10A1 Missense_Mutation p.P74S 0.42 deleterious(0.02) unknown(0) TCGA-BH-A18Q-01 6 116720652 116720652 C A DSE Missense_Mutation p.S80Y 0.45 deleterious(0.01) benign(0.421) TCGA-BH-A18Q-01 6 130475973 130475973 A C SAMD3 Nonsense_Mutation p.Y340* 0.34 TCGA-BH-A18Q-01 6 151674861 151674861 C T AKAP12 Missense_Mutation p.L1779F 0.54 tolerated_low_confidence(0.12) possibly_damaging(0.548) TCGA-BH-A18Q-01 6 153332893 153332893 C G RGS17 Missense_Mutation p.S150T 0.20 deleterious(0.02) benign(0.04) TCGA-BH-A18Q-01 6 154412258 154412258 A G OPRM1 Missense_Mutation p.E365G 0.36 deleterious(0) probably_damaging(0.996) TCGA-BH-A18Q-01 6 158915879 158915879 G T TULP4 Splice_Site p.X624_splice 0.53 TCGA-BH-A18Q-01 6 17856279 17856279 A T KIF13A Missense_Mutation p.F99I 0.30 deleterious(0) probably_damaging(0.999) TCGA-BH-A18Q-01 6 17987307 17987307 A G KIF13A Missense_Mutation p.S42P 0.30 tolerated(0.05) benign(0.044) TCGA-BH-A18Q-01 6 26448491 26448491 G C BTN3A3 Missense_Mutation p.S244T 0.20 tolerated(0.28) benign(0.031) TCGA-BH-A18Q-01 6 31895941 31895941 C T CFB Missense_Mutation p.P86S 0.20 tolerated(0.41) benign(0.003) TCGA-BH-A18Q-01 6 39869637 39869637 C A DAAM2 Missense_Mutation p.L1011M 0.37 tolerated(0.14) benign(0.188) TCGA-BH-A18Q-01 6 6145994 6145994 G T F13A1 Missense_Mutation p.P686H 0.27 deleterious(0.03) possibly_damaging(0.767) TCGA-BH-A18Q-01 7 157016026 157016026 C T UBE3C Missense_Mutation p.P694L 0.26 deleterious(0.01) possibly_damaging(0.842) TCGA-BH-A18Q-01 7 26248127 26248127 A G CBX3 Silent p.L94L 0.36 TCGA-BH-A18Q-01 7 99798609 99798609 G T GATS 3'UTR 0.35 TCGA-BH-A18Q-01 8 145727245 145727245 G T PPP1R16A Nonsense_Mutation p.E516* 0.19 TCGA-BH-A18Q-01 8 37632889 37632889 G - PROSC Frame_Shift_Del p.A163Pfs*6 0.23 TCGA-BH-A18Q-01 8 37972459 37972459 C A ASH2L Missense_Mutation p.P240T 0.10 tolerated(0.23) probably_damaging(0.997) TCGA-BH-A18Q-01 8 67974369 67974369 A G COPS5 5'UTR 0.21 TCGA-BH-A18Q-01 8 86253875 86253875 T A CA1 5'UTR 0.19 TCGA-BH-A18Q-01 9 141010015 141010015 G A CACNA1B Silent p.V1887V 0.10 TCGA-BH-A18Q-01 9 5335559 5335559 T C RLN1 Missense_Mutation p.I84V 0.35 deleterious(0.03) benign(0.389) TCGA-BH-A18Q-01 X 138689912 138689912 C T MCF2 Silent p.E552E 0.32 TCGA-BH-A18Q-01 X 147026507 147026507 C T FMR1 Silent p.D530D 0.18 TCGA-BH-A18Q-01 X 40539158 40539158 G A MED14 Silent p.N946N 0.05 TCGA-BH-A18Q-01 X 48547306 48547306 C A WAS Missense_Mutation p.P397T 0.48 deleterious(0.04) unknown(0) TCGA-BH-A18R-01 11 64571948 64571954 AGCTCCT - MEN1 Frame_Shift_Del p.K567Sfs*24 0.44 TCGA-BH-A18R-01 11 64881060 64881060 C G TM7SF2 Missense_Mutation p.I199M 0.04 tolerated(0.1) benign(0.303) TCGA-BH-A18R-01 12 124349244 124349244 C A DNAH10 Silent p.I2219I 0.44 TCGA-BH-A18R-01 12 91502053 91502053 C T LUM Missense_Mutation p.R235H 0.05 deleterious(0.04) possibly_damaging(0.449) TCGA-BH-A18R-01 13 31205227 31205227 C A USPL1 Missense_Mutation p.P162T 0.24 tolerated(0.1) possibly_damaging(0.804) TCGA-BH-A18R-01 13 46124100 46124100 A T FAM194B Missense_Mutation p.L525Q 0.33 tolerated(0.46) benign(0.088) TCGA-BH-A18R-01 15 34113500 34113500 C T RYR3 Silent p.L3615L 0.20 TCGA-BH-A18R-01 15 75909778 75909778 T C SNUPN Missense_Mutation p.K92E 0.24 deleterious(0.03) benign(0.008) TCGA-BH-A18R-01 17 48941080 48941080 G T TOB1 Missense_Mutation p.S100Y 0.12 deleterious(0) probably_damaging(0.994) TCGA-BH-A18R-01 17 56634243 56634243 C G TEX14 3'UTR 0.35 TCGA-BH-A18R-01 17 58543657 58543657 C T APPBP2 Missense_Mutation p.D223N 0.03 tolerated(0.1) benign(0.436) TCGA-BH-A18R-01 17 58543754 58543754 C T APPBP2 Silent p.Q190Q 0.02 TCGA-BH-A18R-01 19 36379391 36379391 A G NFKBID 3'UTR 0.26 TCGA-BH-A18R-01 19 3909567 3909567 T C ATCAY Missense_Mutation p.M244T 0.21 deleterious(0) possibly_damaging(0.72) TCGA-BH-A18R-01 19 43262178 43262178 C G PSG8 Missense_Mutation p.D229H 0.26 deleterious(0) probably_damaging(0.997) TCGA-BH-A18R-01 19 9063011 9063011 C T MUC16 Silent p.V8145V 0.22 TCGA-BH-A18R-01 1 109007894 109007894 A T NBPF6 Missense_Mutation p.Q503L 0.09 deleterious(0) possibly_damaging(0.901) TCGA-BH-A18R-01 1 152190811 152190811 C G HRNR Missense_Mutation p.Q1098H 0.07 unknown(0) TCGA-BH-A18R-01 1 166819372 166819372 G C POGK Missense_Mutation p.R519P 0.54 deleterious(0.01) probably_damaging(0.992) TCGA-BH-A18R-01 1 231376973 231376973 T C GNPAT 5'UTR 0.18 TCGA-BH-A18R-01 1 93701816 93701816 G - CCDC18 Frame_Shift_Del p.E878Nfs*15 0.21 TCGA-BH-A18R-01 20 17474951 17474951 G C BFSP1 Missense_Mutation p.P589R 0.23 tolerated(0.49) benign(0.164) TCGA-BH-A18R-01 20 5283327 5283327 A G PROKR2 Missense_Mutation p.F172L 0.06 tolerated(0.65) benign(0.001) TCGA-BH-A18R-01 2 111875316 111875316 T A ACOXL Missense_Mutation p.F556I 0.24 deleterious(0) benign(0.035) TCGA-BH-A18R-01 2 113317039 113317039 G A POLR1B Silent p.V500V 0.36 TCGA-BH-A18R-01 3 176769295 176769296 - TA TBL1XR1 Frame_Shift_Ins p.A142* 0.25 TCGA-BH-A18R-01 3 58552971 58552971 C G FAM107A Missense_Mutation p.E97D 0.33 deleterious(0.03) benign(0.052) TCGA-BH-A18R-01 3 9870699 9870699 C T TTLL3 Missense_Mutation p.R535W 0.10 deleterious(0.01) possibly_damaging(0.878) TCGA-BH-A18R-01 4 111539734 111539734 G C PITX2 Nonsense_Mutation p.Y174* 0.23 TCGA-BH-A18R-01 4 42069113 42069113 C G SLC30A9 Missense_Mutation p.R386G 0.25 deleterious(0.04) benign(0.107) TCGA-BH-A18R-01 4 71472490 71472490 C A AMBN 3'UTR 0.33 TCGA-BH-A18R-01 5 135692839 135692839 C T TRPC7 Silent p.Q79Q 0.24 TCGA-BH-A18R-01 5 64313988 64313988 T A CWC27 Missense_Mutation p.M420K 0.05 deleterious(0) possibly_damaging(0.649) TCGA-BH-A18R-01 5 7690808 7690808 G C ADCY2 Missense_Mutation p.R242P 0.08 tolerated(0.07) probably_damaging(0.942) TCGA-BH-A18R-01 6 147123111 147123111 A C ADGB Missense_Mutation p.L1594F 0.12 deleterious(0) possibly_damaging(0.721) TCGA-BH-A18R-01 6 151672994 151672994 G A AKAP12 Silent p.Q1156Q 0.21 TCGA-BH-A18R-01 6 79650671 79650671 G C PHIP Silent p.V1735V 0.04 TCGA-BH-A18R-01 7 128477752 128477752 C T FLNC Silent p.D304D 0.53 TCGA-BH-A18R-01 7 137374734 137374734 C T DGKI Missense_Mutation p.R139Q 0.33 deleterious(0) probably_damaging(0.984) TCGA-BH-A18R-01 9 130670691 130670691 G T ST6GALNAC4 Missense_Mutation p.P297T 0.24 possibly_damaging(0.725) TCGA-BH-A18R-01 9 35664108 35664108 T G ARHGEF39 Missense_Mutation p.N124H 0.21 deleterious(0) possibly_damaging(0.789) TCGA-BH-A18R-01 9 36052308 36052308 T C RECK Silent p.D49D 0.26 TCGA-BH-A18R-01 9 84547625 84547625 C T RP11-383M4.6 Intron 0.11 TCGA-BH-A18R-01 9 84547848 84547848 C T RP11-383M4.6 Intron 0.17 TCGA-BH-A18R-01 9 91090014 91090014 G C SPIN1 Missense_Mutation p.R204T 0.34 tolerated(0.57) benign(0.298) TCGA-BH-A18S-01 10 106153122 106153122 T C CCDC147 Silent p.I521I 0.45 TCGA-BH-A18S-01 12 118619257 118619257 C A TAOK3 Missense_Mutation p.K495N 0.49 deleterious(0) possibly_damaging(0.893) TCGA-BH-A18S-01 12 14650900 14650900 G A ATF7IP Missense_Mutation p.G1236S 0.32 tolerated_low_confidence(0.09) unknown(0) TCGA-BH-A18S-01 12 25362744 25362749 CTTTGT - KRAS 3'UTR 0.36 TCGA-BH-A18S-01 12 49937716 49937716 G A KCNH3 Missense_Mutation p.R281H 0.41 deleterious(0) probably_damaging(0.931) TCGA-BH-A18S-01 15 48788403 48788403 C A FBN1 Silent p.L771L 0.41 TCGA-BH-A18S-01 15 79069162 79069162 A G ADAMTS7 Missense_Mutation p.C497R 0.10 deleterious(0) probably_damaging(0.996) TCGA-BH-A18S-01 16 28550318 28550318 G A NUPR1 5'UTR 0.45 TCGA-BH-A18S-01 16 29825694 29825694 A C PRRT2 Missense_Mutation p.Q307P 0.14 deleterious(0) possibly_damaging(0.804) TCGA-BH-A18S-01 16 4164047 4164047 C A ADCY9 Missense_Mutation p.G466V 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A18S-01 16 67320712 67320712 C T PLEKHG4 Missense_Mutation p.R939C 0.52 deleterious(0) probably_damaging(0.981) TCGA-BH-A18S-01 17 27909785 27909785 C G GIT1 Missense_Mutation p.Q112H 0.44 deleterious(0) probably_damaging(0.998) TCGA-BH-A18S-01 17 80159567 80159567 T A CCDC57 Missense_Mutation p.E85V 0.41 deleterious(0) probably_damaging(0.944) TCGA-BH-A18S-01 18 48703491 48703491 C G MEX3C Missense_Mutation p.E404Q 0.48 deleterious(0.02) possibly_damaging(0.596) TCGA-BH-A18S-01 18 72346030 72346030 T C ZNF407 Missense_Mutation p.C1019R 0.42 deleterious(0) probably_damaging(0.999) TCGA-BH-A18S-01 19 39018289 39018289 C T RYR1 Silent p.V3563V 0.39 TCGA-BH-A18S-01 19 4891118 4891118 A C ARRDC5 Silent p.S323S 0.33 TCGA-BH-A18S-01 1 152976059 152976059 T A SPRR3 3'UTR 0.18 TCGA-BH-A18S-01 1 155252422 155252422 C T HCN3 Missense_Mutation p.R167C 0.16 deleterious(0) benign(0.429) TCGA-BH-A18S-01 1 155932874 155932874 C T ARHGEF2 Silent p.V275V 0.21 TCGA-BH-A18S-01 1 36807418 36807418 C T STK40 Missense_Mutation p.D416N 0.42 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-BH-A18S-01 1 67519643 67519643 C A SLC35D1 Silent p.A18A 0.46 TCGA-BH-A18S-01 22 39636908 39636908 T A PDGFB Intron 0.29 TCGA-BH-A18S-01 2 54587800 54587800 G T C2orf73 3'UTR 0.36 TCGA-BH-A18S-01 2 74803671 74803671 T A M1AP Nonsense_Mutation p.R282* 0.21 TCGA-BH-A18S-01 3 12650791 12650791 T C RAF1 Missense_Mutation p.I122V 0.37 tolerated(0.3) benign(0.002) TCGA-BH-A18S-01 3 27161347 27161347 A T NEK10 Missense_Mutation p.S1089T 0.04 deleterious(0) probably_damaging(0.996) TCGA-BH-A18S-01 4 122766749 122766749 A G BBS7 Silent p.G380G 0.05 TCGA-BH-A18S-01 4 46043235 46043235 G T GABRG1 Missense_Mutation p.P390T 0.38 tolerated(0.58) benign(0.053) TCGA-BH-A18S-01 5 180472586 180472586 G A BTNL9 Missense_Mutation p.E33K 0.06 tolerated(0.54) benign(0.005) TCGA-BH-A18S-01 5 56177496 56177496 T A MAP3K1 Silent p.S823S 0.04 TCGA-BH-A18S-01 6 129581882 129581882 C T LAMA2 Missense_Mutation p.A708V 0.76 deleterious(0.01) probably_damaging(0.973) TCGA-BH-A18S-01 6 152477160 152477160 G A SYNE1 Missense_Mutation p.H7955Y 0.11 probably_damaging(0.998) TCGA-BH-A18S-01 6 56918226 56918226 A G KIAA1586 Missense_Mutation p.E310G 0.41 tolerated(0.18) benign(0.167) TCGA-BH-A18S-01 6 90410501 90410501 A T MDN1 Silent p.S2834S 0.72 TCGA-BH-A18S-01 6 90660902 90660902 T G BACH2 Missense_Mutation p.E308A 0.59 tolerated(0.14) benign(0.009) TCGA-BH-A18S-01 8 141900697 141900697 C T PTK2 Missense_Mutation p.S47N 0.45 tolerated_low_confidence(0.21) benign(0.001) TCGA-BH-A18S-01 X 83723509 83723509 T A HDX Nonsense_Mutation p.R408* 0.06 TCGA-BH-A18T-01 10 5227011 5227011 C T AKR1CL1 Missense_Mutation p.M19I 0.30 tolerated(1) benign(0.013) TCGA-BH-A18T-01 10 61831032 61831032 C A ANK3 Missense_Mutation p.V3203F 0.27 probably_damaging(0.987) TCGA-BH-A18T-01 11 117062673 117062673 C A SIDT2 Missense_Mutation p.S605R 0.34 tolerated(0.21) benign(0.253) TCGA-BH-A18T-01 11 124765517 124765517 C A ROBO4 Missense_Mutation p.G291V 0.36 tolerated(0.08) probably_damaging(0.981) TCGA-BH-A18T-01 11 34981989 34981989 C G PDHX Missense_Mutation p.R189G 0.63 deleterious(0) probably_damaging(0.997) TCGA-BH-A18T-01 11 55873033 55873033 A G OR8H2 Missense_Mutation p.N172S 0.02 tolerated(0.05) possibly_damaging(0.461) TCGA-BH-A18T-01 11 56310715 56310715 T G OR5M11 Missense_Mutation p.S7R 0.24 deleterious(0.01) benign(0.197) TCGA-BH-A18T-01 11 56468777 56468777 C T OR9G1 Missense_Mutation p.P305L 0.18 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-BH-A18T-01 11 57583984 57583984 C A CTNND1 3'UTR 0.44 TCGA-BH-A18T-01 11 61631214 61631214 C G FADS2 Missense_Mutation p.F371L 0.30 deleterious(0.02) benign(0.253) TCGA-BH-A18T-01 11 6643897 6643897 G A DCHS1 Missense_Mutation p.H3004Y 0.06 deleterious(0) probably_damaging(0.997) TCGA-BH-A18T-01 12 117962668 117962668 G A KSR2 Silent p.A736A 0.42 TCGA-BH-A18T-01 12 124862870 124862870 C T NCOR2 Missense_Mutation p.A694T 0.08 unknown(0) TCGA-BH-A18T-01 12 27235066 27235066 G C C12orf71 Missense_Mutation p.D117E 0.04 deleterious(0.01) possibly_damaging(0.804) TCGA-BH-A18T-01 12 57114255 57114255 C G NACA Missense_Mutation p.Q353H 0.04 deleterious_low_confidence(0) benign(0.002) TCGA-BH-A18T-01 12 57988969 57988969 C - PIP4K2C Frame_Shift_Del p.R112Vfs*63 0.26 TCGA-BH-A18T-01 12 6924071 6924071 C G CD4 Missense_Mutation p.L174V 0.35 tolerated(0.62) benign(0.094) TCGA-BH-A18T-01 12 6925370 6925370 C T CD4 Silent p.I252I 0.33 TCGA-BH-A18T-01 12 69991764 69991764 G C CCT2 Missense_Mutation p.L416F 0.44 tolerated(0.38) benign(0.102) TCGA-BH-A18T-01 12 75715242 75715242 C T CAPS2 Missense_Mutation p.A155T 0.25 tolerated(0.13) benign(0.005) TCGA-BH-A18T-01 13 25882072 25882072 G A NUPL1 Missense_Mutation p.G79E 0.37 tolerated(0.11) benign(0.408) TCGA-BH-A18T-01 13 30854258 30854258 G C KATNAL1 Missense_Mutation p.Q89E 0.66 tolerated(0.77) benign(0.013) TCGA-BH-A18T-01 13 37574821 37574821 G A EXOSC8 5'UTR 0.73 TCGA-BH-A18T-01 14 38061531 38061531 G A FOXA1 Missense_Mutation p.A153V 0.54 tolerated(0.11) possibly_damaging(0.577) TCGA-BH-A18T-01 15 23890637 23890637 G T MAGEL2 Silent p.I148I 0.22 TCGA-BH-A18T-01 15 43069192 43069192 T - TTBK2 Intron 0.39 TCGA-BH-A18T-01 15 58830595 58830595 G C LIPC Missense_Mutation p.R51T 0.28 tolerated(0.09) benign(0.034) TCGA-BH-A18T-01 15 75980944 75980944 A G CSPG4 Missense_Mutation p.F821S 0.81 deleterious(0) probably_damaging(0.917) TCGA-BH-A18T-01 16 1129033 1129033 G C SSTR5 Silent p.L55L 0.52 TCGA-BH-A18T-01 16 20346808 20346808 G C UMOD Missense_Mutation p.S619R 0.37 deleterious(0.02) unknown(0) TCGA-BH-A18T-01 16 20931494 20931494 G A LYRM1 Silent p.R70R 0.21 TCGA-BH-A18T-01 16 24372732 24372732 C A CACNG3 Missense_Mutation p.Q166K 0.39 tolerated(1) benign(0.06) TCGA-BH-A18T-01 16 57149416 57149416 C G CPNE2 Missense_Mutation p.P130R 0.05 deleterious(0.01) benign(0.361) TCGA-BH-A18T-01 16 89762202 89762202 G A CDK10 3'UTR 0.32 TCGA-BH-A18T-01 17 3181599 3181599 C A OR3A2 Missense_Mutation p.V211L 0.72 tolerated(0.7) benign(0.012) TCGA-BH-A18T-01 17 40364190 40364190 C G STAT5B Missense_Mutation p.V498L 0.26 deleterious(0) benign(0.02) TCGA-BH-A18T-01 17 48165666 48165666 G A ITGA3 Intron 0.50 TCGA-BH-A18T-01 17 58011559 58011559 A G RPS6KB1 Silent p.L239L 0.80 TCGA-BH-A18T-01 17 7579368 7579368 A C TP53 Missense_Mutation p.Y107D 0.59 deleterious(0.01) probably_damaging(0.988) TCGA-BH-A18T-01 18 54362267 54362267 G T WDR7 Missense_Mutation p.V399L 0.13 tolerated(0.78) benign(0.001) TCGA-BH-A18T-01 18 60209735 60209735 A T ZCCHC2 Silent p.V352V 0.20 TCGA-BH-A18T-01 19 18173028 18173028 G T IL12RB1 Missense_Mutation p.L560I 0.21 deleterious(0.01) benign(0.346) TCGA-BH-A18T-01 19 55107251 55107251 G A LILRA1 Missense_Mutation p.G270D 0.62 tolerated(0.06) probably_damaging(0.987) TCGA-BH-A18T-01 19 55898177 55898177 G T RPL28 Intron 0.67 TCGA-BH-A18T-01 19 55898178 55898178 C A RPL28 Intron 0.68 TCGA-BH-A18T-01 1 1275510 1275510 G A DVL1 Missense_Mutation p.R273C 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-BH-A18T-01 1 149857697 149857697 G T HIST2H2BE 3'UTR 0.21 TCGA-BH-A18T-01 1 151227257 151227257 A T PSMD4 5'UTR 0.15 TCGA-BH-A18T-01 1 156384545 156384545 G C C1orf61 Missense_Mutation p.S24R 0.16 tolerated_low_confidence(0.1) benign(0.044) TCGA-BH-A18T-01 1 158813903 158813903 G A MNDA Silent p.S187S 0.21 TCGA-BH-A18T-01 1 183212590 183212590 G C LAMC2 3'UTR 0.23 TCGA-BH-A18T-01 1 23637052 23637052 G A HNRNPR Silent p.I602I 0.18 TCGA-BH-A18T-01 1 236924431 236924431 C G ACTN2 Silent p.A828A 0.50 TCGA-BH-A18T-01 1 236925789 236925789 G A ACTN2 Missense_Mutation p.R852Q 0.18 tolerated(0.06) benign(0.124) TCGA-BH-A18T-01 1 43675636 43675636 C A WDR65 Missense_Mutation p.R660S 0.22 tolerated_low_confidence(0.13) benign(0) TCGA-BH-A18T-01 1 87810485 87810485 C G LMO4 3'UTR 0.46 TCGA-BH-A18T-01 20 1099311 1099311 C G PSMF1 5'UTR 0.62 TCGA-BH-A18T-01 20 33586607 33586607 C A MYH7B Missense_Mutation p.A1402D 0.43 possibly_damaging(0.888) TCGA-BH-A18T-01 20 56195448 56195448 C T ZBP1 5'UTR 0.40 TCGA-BH-A18T-01 21 33076192 33076192 A G SCAF4 Silent p.I69I 0.37 TCGA-BH-A18T-01 2 179413523 179413523 G A TTN Missense_Mutation p.R30944C 0.07 TCGA-BH-A18T-01 2 179416608 179416608 C T TTN Missense_Mutation p.G30340D 0.36 TCGA-BH-A18T-01 2 21229507 21229507 G C APOB Missense_Mutation p.N3411K 0.44 benign(0.063) TCGA-BH-A18T-01 2 54858364 54858364 G C SPTBN1 Missense_Mutation p.E1060D 0.26 tolerated(0.08) probably_damaging(0.944) TCGA-BH-A18T-01 2 55561331 55561331 A G CCDC88A Missense_Mutation p.Y876H 0.36 tolerated(0.45) benign(0.235) TCGA-BH-A18T-01 2 65298635 65298635 G C CEP68 Silent p.L135L 0.15 TCGA-BH-A18T-01 2 74655820 74655820 G C RTKN Missense_Mutation p.R299G 0.41 deleterious(0) possibly_damaging(0.588) TCGA-BH-A18T-01 2 96689080 96689080 C G GPAT2 Missense_Mutation p.E669Q 0.05 deleterious(0.01) possibly_damaging(0.607) TCGA-BH-A18T-01 2 96943363 96943363 C A SNRNP200 Missense_Mutation p.V1949F 0.67 deleterious(0) probably_damaging(0.971) TCGA-BH-A18T-01 3 122545663 122545663 C G DIRC2 Missense_Mutation p.Q152E 0.42 deleterious(0.01) benign(0.298) TCGA-BH-A18T-01 3 128341012 128341012 C G RPN1 Missense_Mutation p.D546H 0.43 deleterious(0) probably_damaging(0.96) TCGA-BH-A18T-01 3 14552762 14552762 T C GRIP2 RNA 0.31 TCGA-BH-A18T-01 3 169099127 169099127 G T MECOM Missense_Mutation p.P99T 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A18T-01 3 184290399 184290427 CTGGCGGCGGGATGTGCAGCGGGTCTACG - EPHB3 Frame_Shift_Del p.W98Gfs*8 0.13 TCGA-BH-A18T-01 3 33580407 33580407 C T CLASP2 Missense_Mutation p.M1152I 0.61 deleterious(0.01) benign(0.058) TCGA-BH-A18T-01 3 52548172 52548172 C T STAB1 Silent p.Y1163Y 0.70 TCGA-BH-A18T-01 4 76722346 76722346 G C USO1 Missense_Mutation p.R669P 0.42 deleterious(0) probably_damaging(0.988) TCGA-BH-A18T-01 4 88035880 88035880 G T AFF1 Missense_Mutation p.R632M 0.17 deleterious(0) unknown(0) TCGA-BH-A18T-01 4 88035881 88035881 G T AFF1 Missense_Mutation p.R632S 0.21 tolerated(1) unknown(0) TCGA-BH-A18T-01 5 11022927 11022927 C T CTNND2 Missense_Mutation p.G985S 0.37 deleterious(0.02) benign(0.239) TCGA-BH-A18T-01 5 58273034 58273034 T C PDE4D Missense_Mutation p.K564R 0.13 tolerated_low_confidence(0.27) benign(0.069) TCGA-BH-A18T-01 6 144820556 144820556 G A UTRN Nonsense_Mutation p.W1586* 0.10 TCGA-BH-A18T-01 6 155750089 155750089 T A NOX3 Silent p.P328P 0.24 TCGA-BH-A18T-01 6 159401940 159401940 A C RSPH3 Missense_Mutation p.I384R 0.05 tolerated(0.44) benign(0.145) TCGA-BH-A18T-01 6 160913883 160913883 G C LPAL2 RNA 0.50 TCGA-BH-A18T-01 6 17799628 17799628 T C KIF13A Missense_Mutation p.N887D 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-BH-A18T-01 6 46111325 46111325 C A ENPP4 Missense_Mutation p.P437Q 0.39 tolerated(0.08) benign(0.04) TCGA-BH-A18T-01 6 7581614 7581614 T C DSP Missense_Mutation p.Y1731H 0.03 probably_damaging(0.943) TCGA-BH-A18T-01 6 88385194 88385194 C G AKIRIN2 3'UTR 0.62 TCGA-BH-A18T-01 7 100334227 100334227 G T ZAN Silent p.G76G 0.29 TCGA-BH-A18T-01 7 107580692 107580692 C G LAMB1 Missense_Mutation p.G1168A 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A18T-01 7 36934509 36934509 G A ELMO1 Silent p.I517I 0.34 TCGA-BH-A18T-01 7 40102622 40102622 C T CDK13 Silent p.G901G 0.02 TCGA-BH-A18T-01 7 73249185 73249185 C A WBSCR27 Missense_Mutation p.S209I 0.41 deleterious_low_confidence(0.01) benign(0.205) TCGA-BH-A18T-01 7 77200466 77200466 A C PTPN12 Missense_Mutation p.E57D 0.52 deleterious(0.04) benign(0.066) TCGA-BH-A18T-01 7 82544073 82544073 C A PCLO Missense_Mutation p.R4410L 0.29 unknown(0) TCGA-BH-A18T-01 7 82545704 82545704 C T PCLO Silent p.Q3866Q 0.30 TCGA-BH-A18T-01 8 101534956 101534956 C T ANKRD46 Missense_Mutation p.G172S 0.03 tolerated(0.21) possibly_damaging(0.855) TCGA-BH-A18T-01 8 126370005 126370005 G C NSMCE2 Missense_Mutation p.E191Q 0.12 tolerated(0.18) possibly_damaging(0.863) TCGA-BH-A18T-01 8 142517235 142517235 A G MROH5 Silent p.C5C 0.18 TCGA-BH-A18T-01 8 2824124 2824124 C T CSMD1 Missense_Mutation p.G3023E 0.06 probably_damaging(1) TCGA-BH-A18T-01 9 133543691 133543691 G C PRDM12 Missense_Mutation p.K187N 0.56 deleterious(0.01) possibly_damaging(0.884) TCGA-BH-A18T-01 X 101972006 101972006 C T GPRASP2 Missense_Mutation p.H737Y 0.63 deleterious(0.02) benign(0.208) TCGA-BH-A18T-01 X 117033283 117033283 G A KLHL13 Missense_Mutation p.A522V 0.71 deleterious(0.01) possibly_damaging(0.821) TCGA-BH-A18T-01 X 55052441 55052441 C G ALAS2 5'UTR 0.21 TCGA-BH-A18U-01 10 104196278 104196278 G C CUEDC2 5'Flank 0.11 TCGA-BH-A18U-01 10 129913245 129913245 G C MKI67 Missense_Mutation p.S476C 0.16 tolerated(0.09) possibly_damaging(0.707) TCGA-BH-A18U-01 10 26781261 26781261 T G APBB1IP Silent p.G2G 0.03 TCGA-BH-A18U-01 10 69672725 69672725 G A SIRT1 Missense_Mutation p.G618R 0.29 tolerated(0.17) benign(0.028) TCGA-BH-A18U-01 10 91497970 91497970 G A KIF20B Silent p.L1084L 0.12 TCGA-BH-A18U-01 11 105481745 105481745 G C GRIA4 Missense_Mutation p.Q7H 0.11 tolerated_low_confidence(0.15) benign(0) TCGA-BH-A18U-01 11 110007925 110007925 G C ZC3H12C Missense_Mutation p.G187R 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A18U-01 11 111597550 111597550 C T SIK2 3'UTR 0.12 TCGA-BH-A18U-01 11 118375784 118375784 G A KMT2A Silent p.P3059P 0.49 TCGA-BH-A18U-01 11 123777469 123777469 G A OR8D4 Missense_Mutation p.E111K 0.07 deleterious(0) probably_damaging(0.997) TCGA-BH-A18U-01 11 133402338 133402338 G T OPCML 5'UTR 0.11 TCGA-BH-A18U-01 11 64416331 64416331 G C NRXN2 Missense_Mutation p.P1053R 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A18U-01 11 68458384 68458384 G A GAL Splice_Site p.X101_splice 0.12 TCGA-BH-A18U-01 11 94192723 94192723 C G MRE11A Missense_Mutation p.E451Q 0.47 deleterious(0.03) probably_damaging(0.967) TCGA-BH-A18U-01 12 104413413 104413413 C T GLT8D2 Missense_Mutation p.R5Q 0.13 deleterious(0.01) benign(0.077) TCGA-BH-A18U-01 12 112457615 112457615 G A ERP29 Missense_Mutation p.G67D 0.16 deleterious(0) probably_damaging(0.999) TCGA-BH-A18U-01 12 119419693 119419693 G A SRRM4 Silent p.A2A 0.26 TCGA-BH-A18U-01 12 122292606 122292606 C T HPD Intron 0.11 TCGA-BH-A18U-01 12 124377793 124377793 G A DNAH10 Silent p.A2885A 0.16 TCGA-BH-A18U-01 12 133220066 133220066 G C POLE Silent p.G1457G 0.15 TCGA-BH-A18U-01 12 133351861 133351861 C A GOLGA3 Nonsense_Mutation p.E1337* 0.15 TCGA-BH-A18U-01 12 52448796 52448796 G A NR4A1 Silent p.T241T 0.19 TCGA-BH-A18U-01 12 67686481 67686481 G A CAND1 Missense_Mutation p.D98N 0.11 tolerated(0.2) possibly_damaging(0.797) TCGA-BH-A18U-01 12 72013172 72013172 A G ZFC3H1 Silent p.L1689L 0.17 TCGA-BH-A18U-01 13 107822931 107822931 G C FAM155A Missense_Mutation p.L431V 0.34 tolerated(1) probably_damaging(0.99) TCGA-BH-A18U-01 13 113699676 113699676 G T MCF2L Splice_Site p.X123_splice 0.81 TCGA-BH-A18U-01 13 23905513 23905513 G A SACS Silent p.L4168L 0.23 TCGA-BH-A18U-01 13 29600997 29600997 C T MTUS2 Missense_Mutation p.P731L 0.75 deleterious(0) probably_damaging(1) TCGA-BH-A18U-01 14 35742701 35742701 G A KIAA0391 Missense_Mutation p.D561N 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-BH-A18U-01 14 44976247 44976247 G A FSCB 5'UTR 0.18 TCGA-BH-A18U-01 14 96809459 96809459 T G ATG2B Silent p.P247P 0.38 TCGA-BH-A18U-01 15 38757568 38757568 C T FAM98B Missense_Mutation p.R106C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BH-A18U-01 15 44060774 44060774 G A PDIA3 Silent p.E372E 0.05 TCGA-BH-A18U-01 15 64716240 64716240 A G TRIP4 Missense_Mutation p.R457G 0.04 deleterious(0) probably_damaging(1) TCGA-BH-A18U-01 15 75653638 75653638 T C MAN2C1 Missense_Mutation p.S435G 0.06 tolerated(0.26) benign(0.062) TCGA-BH-A18U-01 15 91312420 91312420 T C BLM Silent p.L789L 0.04 TCGA-BH-A18U-01 16 55907861 55907861 C T CES5A Silent p.V83V 0.16 TCGA-BH-A18U-01 16 57188374 57188374 G A FAM192A Missense_Mutation p.P198L 0.18 deleterious(0.02) benign(0.001) TCGA-BH-A18U-01 16 68943146 68943147 AG - TANGO6 Frame_Shift_Del p.E612Vfs*4 0.17 TCGA-BH-A18U-01 17 30351775 30351775 G C LRRC37B Missense_Mutation p.W575C 0.05 deleterious(0) possibly_damaging(0.893) TCGA-BH-A18U-01 17 37564043 37564043 C G MED1 Missense_Mutation p.Q1477H 0.02 deleterious_low_confidence(0.01) unknown(0) TCGA-BH-A18U-01 17 38233180 38233180 C - THRA Frame_Shift_Del p.S38Afs*89 0.38 TCGA-BH-A18U-01 17 3961435 3961435 G C ZZEF1 Missense_Mutation p.A1673G 0.18 deleterious(0.01) probably_damaging(0.913) TCGA-BH-A18U-01 17 49097557 49097557 C T SPAG9 Missense_Mutation p.D352N 0.03 deleterious(0) benign(0.272) TCGA-BH-A18U-01 17 4996237 4996237 C T ZFP3 Nonsense_Mutation p.Q480* 0.19 TCGA-BH-A18U-01 17 60040309 60040309 C G MED13 Missense_Mutation p.G1623A 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A18U-01 17 62144142 62144142 T C ERN1 Missense_Mutation p.N244S 0.10 tolerated(0.61) possibly_damaging(0.625) TCGA-BH-A18U-01 17 64026036 64026036 C G CEP112 Missense_Mutation p.E442Q 0.08 deleterious(0.04) probably_damaging(0.983) TCGA-BH-A18U-01 17 7577067 7577085 TGCGGAGATTCTCTTCCTC - TP53 Frame_Shift_Del p.E285Rfs*54 0.75 TCGA-BH-A18U-01 17 79503191 79503191 G C FSCN2 Missense_Mutation p.E335Q 0.08 tolerated(0.11) possibly_damaging(0.854) TCGA-BH-A18U-01 18 54350050 54350050 C T WDR7 Silent p.S162S 0.17 TCGA-BH-A18U-01 19 21720817 21720817 C T ZNF429 Silent p.P654P 0.10 TCGA-BH-A18U-01 19 39292707 39292707 G A LGALS4 Silent p.S250S 0.40 TCGA-BH-A18U-01 19 41707218 41707218 C T CYP2S1 Missense_Mutation p.T306M 0.19 deleterious(0.01) benign(0.292) TCGA-BH-A18U-01 19 45852815 45852815 G A KLC3 Silent p.L366L 0.12 TCGA-BH-A18U-01 19 46181025 46181025 C T GIPR Silent p.L304L 0.04 TCGA-BH-A18U-01 19 50017360 50017360 C T FCGRT Silent p.L99L 0.12 TCGA-BH-A18U-01 19 50098153 50098153 C T PRR12 Silent p.D187D 0.11 TCGA-BH-A18U-01 19 6495820 6495820 C T TUBB4A Silent p.S230S 0.17 TCGA-BH-A18U-01 19 6718310 6718310 G A C3 Silent p.S127S 0.15 TCGA-BH-A18U-01 1 12175715 12175715 C T TNFRSF8 Missense_Mutation p.S292L 0.07 tolerated(0.16) benign(0.059) TCGA-BH-A18U-01 1 151108173 151108173 G A SEMA6C Missense_Mutation p.L443F 0.07 deleterious(0) possibly_damaging(0.775) TCGA-BH-A18U-01 1 154938529 154938529 G C SHC1 Missense_Mutation p.S427C 0.11 tolerated(0.31) benign(0.037) TCGA-BH-A18U-01 1 175096180 175096180 G A TNN Missense_Mutation p.G1002S 0.14 deleterious(0) probably_damaging(0.958) TCGA-BH-A18U-01 1 176659486 176659486 G A PAPPA2 Missense_Mutation p.R784Q 0.56 tolerated(0.82) benign(0.013) TCGA-BH-A18U-01 1 177199234 177199234 C T BRINP2 Silent p.F74F 0.12 TCGA-BH-A18U-01 1 198713308 198713308 G A PTPRC Silent p.P941P 0.03 TCGA-BH-A18U-01 1 201456065 201456070 TAATAA - CSRP1 Intron 0.31 TCGA-BH-A18U-01 1 23111019 23111019 C T EPHB2 Silent p.H87H 0.19 TCGA-BH-A18U-01 1 235301419 235301419 G A RBM34 Nonsense_Mutation p.Q258* 0.11 TCGA-BH-A18U-01 1 45275934 45275934 C T BTBD19 Missense_Mutation p.R46W 0.06 deleterious(0) probably_damaging(0.997) TCGA-BH-A18U-01 1 6157368 6157369 - G KCNAB2 Frame_Shift_Ins p.A372Gfs*29 0.23 TCGA-BH-A18U-01 20 39793935 39793935 G T PLCG1 Missense_Mutation p.M479I 0.15 tolerated(0.38) benign(0) TCGA-BH-A18U-01 20 52198134 52198134 G A ZNF217 Missense_Mutation p.S411F 0.26 deleterious(0) possibly_damaging(0.777) TCGA-BH-A18U-01 20 58452611 58452611 C T SYCP2 Splice_Site p.X994_splice 0.06 TCGA-BH-A18U-01 20 60578311 60578311 G C TAF4 Silent p.A797A 0.08 TCGA-BH-A18U-01 20 62560669 62560669 C T DNAJC5 Missense_Mutation p.L38F 0.21 deleterious(0) probably_damaging(0.991) TCGA-BH-A18U-01 21 33069027 33069027 C T SCAF4 Missense_Mutation p.E272K 0.07 probably_damaging(0.952) TCGA-BH-A18U-01 21 40795105 40795105 G A LCA5L Nonsense_Mutation p.Q212* 0.13 TCGA-BH-A18U-01 22 21096566 21096566 G A PI4KA Silent p.L1231L 0.16 TCGA-BH-A18U-01 22 23264914 23264914 G T IGLC7 Missense_Mutation p.K50N 0.13 deleterious_low_confidence(0.05) benign(0.001) TCGA-BH-A18U-01 22 30197090 30197090 T C ASCC2 Silent p.K526K 0.13 TCGA-BH-A18U-01 22 41489026 41489026 G A EP300 Silent p.V6V 0.09 TCGA-BH-A18U-01 22 42271676 42271676 C G SREBF2 Missense_Mutation p.S445C 0.12 deleterious(0) probably_damaging(0.995) TCGA-BH-A18U-01 22 47095261 47095263 TGA - CERK In_Frame_Del p.I297del 0.32 TCGA-BH-A18U-01 2 152322388 152322388 G A RIF1 Silent p.Q2118Q 0.04 TCGA-BH-A18U-01 2 163128793 163128793 C T IFIH1 Missense_Mutation p.M853I 0.08 deleterious(0) probably_damaging(0.973) TCGA-BH-A18U-01 2 163253329 163253329 A G KCNH7 Missense_Mutation p.L845S 0.05 deleterious(0) probably_damaging(0.996) TCGA-BH-A18U-01 2 163291915 163291915 C A KCNH7 Missense_Mutation p.D583Y 0.13 tolerated(0.05) benign(0.102) TCGA-BH-A18U-01 2 170366479 170366479 C G KLHL41 Missense_Mutation p.S64C 0.15 deleterious(0) probably_damaging(0.986) TCGA-BH-A18U-01 2 206608200 206608200 G A NRP2 Missense_Mutation p.R522H 0.16 deleterious(0.01) possibly_damaging(0.834) TCGA-BH-A18U-01 2 232325491 232325491 C T NCL Missense_Mutation p.E234K 0.04 benign(0.004) TCGA-BH-A18U-01 2 27663559 27663559 G C NRBP1 Missense_Mutation p.E395Q 0.18 deleterious(0.02) possibly_damaging(0.905) TCGA-BH-A18U-01 2 29296696 29296696 T C C2orf71 Silent p.K144K 0.17 TCGA-BH-A18U-01 2 61719314 61719314 C G XPO1 Missense_Mutation p.Q581H 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A18U-01 2 77745448 77745448 C T LRRTM4 Missense_Mutation p.C516Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-BH-A18U-01 2 97353624 97353624 C G FER1L5 RNA 0.13 TCGA-BH-A18U-01 3 10251290 10251290 G A IRAK2 Missense_Mutation p.A148T 0.14 tolerated(0.31) benign(0.007) TCGA-BH-A18U-01 3 124952610 124952610 C T ZNF148 Silent p.T320T 0.09 TCGA-BH-A18U-01 3 125843213 125843213 C A ALDH1L1 Nonsense_Mutation p.G638* 0.10 TCGA-BH-A18U-01 3 131404742 131404742 G C CPNE4 Missense_Mutation p.Q190E 0.03 tolerated(0.55) benign(0.001) TCGA-BH-A18U-01 3 136062775 136062775 T C STAG1 Silent p.P1115P 0.10 TCGA-BH-A18U-01 3 136076644 136076644 C G STAG1 Missense_Mutation p.E995Q 0.10 tolerated(0.49) benign(0.119) TCGA-BH-A18U-01 3 138007947 138007947 T A ARMC8 Missense_Mutation p.W613R 0.03 tolerated(0.17) benign(0.031) TCGA-BH-A18U-01 3 14862664 14862664 G A FGD5 Missense_Mutation p.D696N 0.08 tolerated(0.07) possibly_damaging(0.448) TCGA-BH-A18U-01 3 169526495 169526495 G C LRRC34 Missense_Mutation p.L60V 0.09 tolerated(0.84) benign(0.041) TCGA-BH-A18U-01 3 184035137 184035137 C T EIF4G1 Missense_Mutation p.P66L 0.27 deleterious(0) probably_damaging(0.994) TCGA-BH-A18U-01 3 48665399 48665399 C T SLC26A6 Missense_Mutation p.V625I 0.09 tolerated(0.28) benign(0.056) TCGA-BH-A18U-01 3 49947969 49947969 G A MON1A Missense_Mutation p.S418F 0.17 deleterious(0) probably_damaging(0.952) TCGA-BH-A18U-01 3 53809970 53809970 C G CACNA1D Silent p.L1440L 0.08 TCGA-BH-A18U-01 3 54930695 54930695 G T CACNA2D3 Intron 0.11 TCGA-BH-A18U-01 3 54930777 54930777 G T CACNA2D3 Missense_Mutation p.D750Y 0.12 deleterious(0) possibly_damaging(0.906) TCGA-BH-A18U-01 3 54930801 54930801 G T CACNA2D3 Nonsense_Mutation p.E758* 0.11 TCGA-BH-A18U-01 3 54930819 54930819 G A CACNA2D3 Missense_Mutation p.D764N 0.11 tolerated(0.07) probably_damaging(0.995) TCGA-BH-A18U-01 3 54959016 54959016 G A LRTM1 Silent p.T78T 0.11 TCGA-BH-A18U-01 3 57407292 57407292 C G DNAH12 Missense_Mutation p.E1820Q 0.03 tolerated(0.39) benign(0.403) TCGA-BH-A18U-01 3 99568636 99568636 G A FILIP1L Silent p.L628L 0.09 TCGA-BH-A18U-01 4 108578129 108578129 C T PAPSS1 Missense_Mutation p.G273D 0.17 deleterious(0) probably_damaging(0.99) TCGA-BH-A18U-01 4 149075853 149075853 G A NR3C2 Silent p.P738P 0.25 TCGA-BH-A18U-01 4 185606574 185606574 G C PRIMPOL Missense_Mutation p.E370Q 0.13 possibly_damaging(0.722) TCGA-BH-A18U-01 4 55973912 55973912 G A KDR Silent p.N468N 0.15 TCGA-BH-A18U-01 4 74607387 74607387 G A IL8 Missense_Mutation p.E65K 0.09 deleterious(0.02) probably_damaging(1) TCGA-BH-A18U-01 4 88415533 88415533 A G SPARCL1 Missense_Mutation p.F140S 0.26 tolerated(0.16) benign(0.035) TCGA-BH-A18U-01 5 118965370 118965370 T A FAM170A 5'UTR 0.08 TCGA-BH-A18U-01 5 1320825 1320825 C T CLPTM1L Missense_Mutation p.D480N 0.07 deleterious(0) probably_damaging(0.994) TCGA-BH-A18U-01 5 138260325 138260325 C T CTNNA1 Missense_Mutation p.S558L 0.14 deleterious(0) benign(0.267) TCGA-BH-A18U-01 5 139062499 139062499 C T CXXC5 3'UTR 0.14 TCGA-BH-A18U-01 5 140433272 140433272 C T PCDHB1 Silent p.N739N 0.35 TCGA-BH-A18U-01 5 140530673 140530673 G A PCDHB6 Missense_Mutation p.A279T 0.15 tolerated(0.44) benign(0.008) TCGA-BH-A18U-01 5 145890007 145890007 C T TCERG1 Silent p.S1033S 0.03 TCGA-BH-A18U-01 5 16711286 16711286 C T MYO10 Silent p.V666V 0.12 TCGA-BH-A18U-01 5 169675546 169675546 A T LCP2 3'UTR 0.05 TCGA-BH-A18U-01 5 177673283 177673283 A G COL23A1 Missense_Mutation p.I462T 0.07 tolerated(0.17) probably_damaging(0.999) TCGA-BH-A18U-01 5 178540888 178540888 C G ADAMTS2 Missense_Mutation p.E1206Q 0.10 deleterious_low_confidence(0.03) benign(0.224) TCGA-BH-A18U-01 5 58021869 58021869 C A RAB3C Missense_Mutation p.A98D 0.14 deleterious(0) probably_damaging(0.941) TCGA-BH-A18U-01 5 69718708 69718708 A G GTF2H2B RNA 0.52 TCGA-BH-A18U-01 5 72469666 72469666 G A TMEM174 Missense_Mutation p.C199Y 0.05 tolerated(1) benign(0.001) TCGA-BH-A18U-01 5 74130328 74130328 C A FAM169A Missense_Mutation p.C138F 0.03 deleterious(0) probably_damaging(1) TCGA-BH-A18U-01 6 152651951 152651951 C T SYNE1 Silent p.Q4623Q 0.10 TCGA-BH-A18U-01 6 33174490 33174490 G A HSD17B8 3'UTR 0.08 TCGA-BH-A18U-01 6 41738180 41738180 G C FRS3 3'UTR 0.26 TCGA-BH-A18U-01 6 619459 619459 C A EXOC2 Missense_Mutation p.W169C 0.03 deleterious(0) probably_damaging(0.977) TCGA-BH-A18U-01 6 90604284 90604284 C T GJA10 Nonsense_Mutation p.R33* 0.27 TCGA-BH-A18U-01 7 116955322 116955322 C T WNT2 Missense_Mutation p.E131K 0.09 deleterious(0.01) possibly_damaging(0.871) TCGA-BH-A18U-01 7 117306992 117306992 G T CFTR Missense_Mutation p.D1425Y 0.12 deleterious(0) possibly_damaging(0.869) TCGA-BH-A18U-01 7 117864744 117864744 C T ANKRD7 5'UTR 0.38 TCGA-BH-A18U-01 7 138968449 138968449 C T UBN2 Missense_Mutation p.S933L 0.04 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BH-A18U-01 7 141672464 141672464 G T TAS2R38 3'UTR 0.10 TCGA-BH-A18U-01 7 150937577 150937577 T C SMARCD3 Missense_Mutation p.E324G 0.19 deleterious(0) possibly_damaging(0.756) TCGA-BH-A18U-01 7 38402884 38402884 C T TRGV2 Intron 0.16 TCGA-BH-A18U-01 7 55221725 55221725 G A EGFR Missense_Mutation p.E257K 0.04 deleterious(0.01) benign(0.283) TCGA-BH-A18U-01 7 70886058 70886058 G A WBSCR17 Nonsense_Mutation p.W310* 0.70 TCGA-BH-A18U-01 7 86541539 86541539 T C KIAA1324L Missense_Mutation p.D673G 0.41 deleterious(0) probably_damaging(0.99) TCGA-BH-A18U-01 7 99662436 99662436 C T ZSCAN21 3'UTR 0.25 TCGA-BH-A18U-01 8 139160824 139160824 C A FAM135B Missense_Mutation p.E1129D 0.02 deleterious(0.03) possibly_damaging(0.667) TCGA-BH-A18U-01 8 142368027 142368027 G C GPR20 5'UTR 0.18 TCGA-BH-A18U-01 8 26628027 26628027 C T ADRA1A Missense_Mutation p.C347Y 0.13 tolerated(1) benign(0) TCGA-BH-A18U-01 8 65509394 65509394 A - CYP7B1 Frame_Shift_Del p.F442Lfs*18 0.11 TCGA-BH-A18U-01 8 77620260 77620260 G A ZFHX4 Missense_Mutation p.E1024K 0.07 possibly_damaging(0.502) TCGA-BH-A18U-01 9 116154537 116154537 G A ALAD Intron 0.07 TCGA-BH-A18U-01 9 123580344 123580344 G C PSMD5 Nonsense_Mutation p.S452* 0.10 TCGA-BH-A18U-01 9 123739074 123739074 G A C5 Silent p.L1256L 0.09 TCGA-BH-A18U-01 9 124528856 124528856 G A DAB2IP Missense_Mutation p.R487Q 0.18 deleterious(0) probably_damaging(0.984) TCGA-BH-A18U-01 9 156515 156515 C G CBWD1 Missense_Mutation p.E181Q 0.27 tolerated(0.05) possibly_damaging(0.517) TCGA-BH-A18U-01 9 16436220 16436220 C T BNC2 Missense_Mutation p.D658N 0.22 deleterious(0.04) benign(0.227) TCGA-BH-A18U-01 9 80880403 80880403 G A CEP78 Missense_Mutation p.E582K 0.14 tolerated(0.11) probably_damaging(0.991) TCGA-BH-A18U-01 9 90322160 90322160 T A DAPK1 Missense_Mutation p.L1392M 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A18U-01 X 100277028 100277028 C T TRMT2B Silent p.E260E 0.06 TCGA-BH-A18U-01 X 109695584 109695584 T C RGAG1 Missense_Mutation p.M580T 0.40 tolerated(0.47) benign(0.023) TCGA-BH-A18U-01 X 12734604 12734604 G A FRMPD4 Missense_Mutation p.D676N 0.06 deleterious_low_confidence(0) benign(0.19) TCGA-BH-A18U-01 X 147733647 147733647 G A AFF2 Missense_Mutation p.E59K 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.874) TCGA-BH-A18U-01 X 153248082 153248082 C G TMEM187 Missense_Mutation p.S190W 0.10 deleterious(0) probably_damaging(0.994) TCGA-BH-A18U-01 X 153580968 153580968 G A FLNA Missense_Mutation p.S2152L 0.13 deleterious(0.01) possibly_damaging(0.646) TCGA-BH-A18U-01 X 38144757 38144757 T A RPGR 3'UTR 0.02 TCGA-BH-A18U-01 X 41048627 41048627 G A USP9X Missense_Mutation p.M1292I 0.10 deleterious(0.01) possibly_damaging(0.577) TCGA-BH-A18U-01 X 48321360 48321360 C T SLC38A5 Nonsense_Mutation p.W166* 0.04 TCGA-BH-A18U-01 X 49853534 49853534 C G CLCN5 Silent p.A579A 0.12 TCGA-BH-A18U-01 X 52825543 52825543 C G SPANXN5 Missense_Mutation p.E68D 0.15 tolerated(0.26) possibly_damaging(0.86) TCGA-BH-A18U-01 X 53113974 53113974 T C TSPYL2 Missense_Mutation p.M308T 0.12 deleterious(0) probably_damaging(0.958) TCGA-BH-A18U-01 X 70320750 70320750 G A FOXO4 Missense_Mutation p.E224K 0.28 tolerated(0.11) benign(0.054) TCGA-BH-A18U-01 X 76937761 76937761 G A ATRX Missense_Mutation p.S996L 0.03 benign(0.001) TCGA-BH-A18U-01 X 76938781 76938781 G A ATRX Missense_Mutation p.S656F 0.33 probably_damaging(0.996) TCGA-BH-A18U-01 X 91134233 91134233 G T PCDH11X Silent p.V998V 0.26 TCGA-BH-A18U-01 X 9714090 9714090 T A GPR143 Missense_Mutation p.T218S 0.14 tolerated(0.31) benign(0.034) TCGA-BH-A18U-01 X 99840231 99840231 G A TNMD Missense_Mutation p.E18K 0.08 tolerated(0.19) benign(0.053) TCGA-BH-A18V-01 10 102762473 102762473 G A LZTS2 Missense_Mutation p.D60N 0.28 deleterious(0.04) benign(0.056) TCGA-BH-A18V-01 10 115963199 115963199 C T TDRD1 Missense_Mutation p.S285F 0.06 deleterious(0) probably_damaging(0.983) TCGA-BH-A18V-01 10 13251286 13251286 T A MCM10 Silent p.A868A 0.12 TCGA-BH-A18V-01 10 16893355 16893355 T C CUBN Missense_Mutation p.K3181R 0.35 tolerated(0.27) benign(0.107) TCGA-BH-A18V-01 10 37508523 37508523 A G ANKRD30A Missense_Mutation p.M1239V 0.30 tolerated(0.06) benign(0.002) TCGA-BH-A18V-01 10 52103557 52103557 C A SGMS1 Silent p.G106G 0.17 TCGA-BH-A18V-01 10 90661472 90661472 C A STAMBPL1 Missense_Mutation p.Q3K 0.43 deleterious_low_confidence(0.02) benign(0.092) TCGA-BH-A18V-01 10 96829054 96829054 G A CYP2C8 Missense_Mutation p.L36F 0.44 tolerated(0.14) benign(0.027) TCGA-BH-A18V-01 10 99994243 99994243 G A R3HCC1L Missense_Mutation p.A668T 0.20 deleterious(0) probably_damaging(1) TCGA-BH-A18V-01 11 128638063 128638063 G A FLI1 Missense_Mutation p.G94E 0.62 tolerated(0.21) benign(0.008) TCGA-BH-A18V-01 11 30034200 30034200 T C KCNA4 Missense_Mutation p.E9G 0.56 deleterious_low_confidence(0) unknown(0) TCGA-BH-A18V-01 11 33370766 33370766 C G HIPK3 Missense_Mutation p.P914A 0.03 tolerated(0.07) possibly_damaging(0.529) TCGA-BH-A18V-01 11 43905530 43905530 C G ALKBH3 Intron 0.37 TCGA-BH-A18V-01 11 47364566 47364596 GCCCACCTTTCACAAAGAGCTCCGTGCTACA - MYBPC3 Splice_Site p.X443_splice 0.32 TCGA-BH-A18V-01 11 58035368 58035368 G C OR10W1 5'UTR 0.38 TCGA-BH-A18V-01 11 59132044 59132044 C A OR5AN1 Missense_Mutation p.T38K 0.05 deleterious(0) benign(0.066) TCGA-BH-A18V-01 11 6023829 6048535 11:6023829-6048535 - OR56A4 large deletion 0.09 TCGA-BH-A18V-01 11 60899619 60899619 T C VPS37C Silent p.A247A 0.25 TCGA-BH-A18V-01 11 60899620 60899620 G C VPS37C Missense_Mutation p.A247G 0.25 tolerated(0.19) benign(0.026) TCGA-BH-A18V-01 11 64699231 64699231 T C PPP2R5B Missense_Mutation p.L336P 0.35 deleterious(0) probably_damaging(0.998) TCGA-BH-A18V-01 11 64699232 64699232 G T PPP2R5B Silent p.L336L 0.35 TCGA-BH-A18V-01 11 67191270 67191270 G T CARNS1 Missense_Mutation p.G684V 0.39 deleterious(0) probably_damaging(0.985) TCGA-BH-A18V-01 11 76895641 76895641 G C MYO7A Missense_Mutation p.K1128N 0.42 tolerated(0.49) possibly_damaging(0.686) TCGA-BH-A18V-01 12 101757468 101757468 G C UTP20 Missense_Mutation p.G1969R 0.26 deleterious(0) probably_damaging(0.928) TCGA-BH-A18V-01 12 10205227 10205227 A T CLEC9A Splice_Site 0.23 TCGA-BH-A18V-01 12 108098421 108098421 C A PWP1 Missense_Mutation p.A325D 0.03 tolerated(0.06) benign(0.112) TCGA-BH-A18V-01 12 16055855 16055855 A T STRAP Missense_Mutation p.E332D 0.25 tolerated_low_confidence(0.35) benign(0.004) TCGA-BH-A18V-01 12 19500091 19500091 G C PLEKHA5 Missense_Mutation p.G958A 0.26 tolerated(0.23) benign(0.308) TCGA-BH-A18V-01 12 20799535 20799535 C T PDE3A Missense_Mutation p.S788L 0.27 deleterious(0.04) benign(0.042) TCGA-BH-A18V-01 12 21624426 21624426 G A RECQL Missense_Mutation p.P535S 0.29 deleterious(0.01) probably_damaging(0.945) TCGA-BH-A18V-01 12 22796922 22796922 G A ETNK1 Missense_Mutation p.D217N 0.17 tolerated(0.22) possibly_damaging(0.907) TCGA-BH-A18V-01 12 51457830 51457830 G C CSRNP2 Missense_Mutation p.P444R 0.13 deleterious_low_confidence(0.01) benign(0.117) TCGA-BH-A18V-01 12 52649868 52649868 G A KRT121P RNA 0.59 TCGA-BH-A18V-01 12 57423998 57423998 G C MYO1A Missense_Mutation p.Q863E 0.50 tolerated(0.63) benign(0.016) TCGA-BH-A18V-01 12 8073974 8073975 - C SLC2A3 3'UTR 0.15 TCGA-BH-A18V-01 12 9833616 9833616 T G CLEC2D Silent p.V53V 0.12 TCGA-BH-A18V-01 13 101748002 101748002 A T NALCN Missense_Mutation p.N1064K 0.52 tolerated(1) benign(0.012) TCGA-BH-A18V-01 13 113909369 113909369 T A CUL4A Missense_Mutation p.F654Y 0.02 deleterious(0) probably_damaging(0.991) TCGA-BH-A18V-01 13 29600959 29600959 C G MTUS2 Silent p.V718V 0.20 TCGA-BH-A18V-01 13 32729667 32729667 G C FRY Missense_Mutation p.D507H 0.29 deleterious(0) probably_damaging(1) TCGA-BH-A18V-01 13 36049917 36049917 G C MAB21L1 Missense_Mutation p.S120C 0.32 deleterious(0.01) probably_damaging(1) TCGA-BH-A18V-01 13 41834948 41834948 C G MTRF1 Missense_Mutation p.Q32H 0.38 tolerated_low_confidence(0.16) benign(0.004) TCGA-BH-A18V-01 13 47409443 47409443 G A HTR2A Silent p.I315I 0.40 TCGA-BH-A18V-01 13 70456605 70456605 C T KLHL1 Missense_Mutation p.R346K 0.22 tolerated(1) benign(0.002) TCGA-BH-A18V-01 13 95273462 95273462 C T GPR180 Silent p.G289G 0.22 TCGA-BH-A18V-01 13 99376256 99376256 G C SLC15A1 Missense_Mutation p.T92R 0.28 deleterious(0) possibly_damaging(0.516) TCGA-BH-A18V-01 14 102792742 102792742 A C ZNF839 Missense_Mutation p.T237P 0.11 tolerated(0.05) possibly_damaging(0.793) TCGA-BH-A18V-01 14 24880591 24880591 C G NYNRIN Silent p.L859L 0.58 TCGA-BH-A18V-01 14 45716464 45716464 G C MIS18BP1 Nonsense_Mutation p.S9* 0.55 TCGA-BH-A18V-01 14 65053580 65053580 G C PPP1R36 Missense_Mutation p.D232H 0.56 deleterious(0) probably_damaging(0.992) TCGA-BH-A18V-01 14 65055944 65055944 C A PPP1R36 Missense_Mutation p.T386K 0.07 tolerated_low_confidence(0.86) benign(0.005) TCGA-BH-A18V-01 14 70245060 70245060 C G SLC10A1 Missense_Mutation p.K311N 0.09 deleterious(0.05) benign(0.016) TCGA-BH-A18V-01 14 81606112 81606112 A T TSHR Missense_Mutation p.K261M 0.45 deleterious(0) probably_damaging(0.947) TCGA-BH-A18V-01 14 81862331 81862331 C G STON2 Missense_Mutation p.D94H 0.68 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-BH-A18V-01 14 95669354 95669354 G A CLMN Nonsense_Mutation p.Q778* 0.35 TCGA-BH-A18V-01 15 20488791 20488791 C G CHEK2P2 RNA 0.10 TCGA-BH-A18V-01 15 32929259 32929259 C G ARHGAP11A Missense_Mutation p.S762C 0.31 deleterious(0.04) benign(0.006) TCGA-BH-A18V-01 15 37388545 37388545 C A MEIS2 Missense_Mutation p.G111V 0.17 deleterious(0.03) possibly_damaging(0.507) TCGA-BH-A18V-01 15 41800394 41800394 C A LTK Missense_Mutation p.E374D 0.37 tolerated_low_confidence(0.1) probably_damaging(0.992) TCGA-BH-A18V-01 15 45968399 45968399 A T SQRDL Missense_Mutation p.E252V 0.10 deleterious(0.05) benign(0.219) TCGA-BH-A18V-01 15 48717990 48717990 G T FBN1 Missense_Mutation p.H2426N 0.34 benign(0.009) TCGA-BH-A18V-01 15 49716609 49716609 C T FGF7 Nonsense_Mutation p.Q39* 0.38 TCGA-BH-A18V-01 15 64687614 64687614 A G TRIP4 Missense_Mutation p.K97E 0.43 tolerated(0.48) benign(0.017) TCGA-BH-A18V-01 15 73593721 73593721 C T NEO1 Missense_Mutation p.R1409W 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A18V-01 15 74836815 74836815 G A ARID3B Missense_Mutation p.E180K 0.41 deleterious(0) probably_damaging(0.948) TCGA-BH-A18V-01 15 85327556 85327556 G T ZNF592 Silent p.L550L 0.33 TCGA-BH-A18V-01 15 85405916 85405916 G T ALPK3 Missense_Mutation p.D1596Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-BH-A18V-01 16 11369578 11369578 T G PRM2 3'UTR 0.42 TCGA-BH-A18V-01 16 11933604 11933620 ATTTCGTCTTCGGATTC - RSL1D1 Frame_Shift_Del p.E360Pfs*13 0.15 TCGA-BH-A18V-01 16 14334339 14334339 C G MKL2 Missense_Mutation p.F359L 0.36 tolerated(1) benign(0) TCGA-BH-A18V-01 16 15702342 15702342 G C KIAA0430 Missense_Mutation p.L1330V 0.33 deleterious(0) probably_damaging(0.959) TCGA-BH-A18V-01 16 23678523 23678523 T G DCTN5 3'UTR 0.34 TCGA-BH-A18V-01 16 27448978 27448978 G C IL21R Missense_Mutation p.E108Q 0.37 tolerated(0.18) possibly_damaging(0.608) TCGA-BH-A18V-01 16 29819108 29819108 C G MAZ Missense_Mutation p.H334Q 0.25 tolerated(0.14) possibly_damaging(0.767) TCGA-BH-A18V-01 16 84473108 84473108 C T ATP2C2 Missense_Mutation p.T396M 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-BH-A18V-01 17 17171253 17171253 G T COPS3 Missense_Mutation p.D129E 0.58 tolerated(1) benign(0.002) TCGA-BH-A18V-01 17 27240940 27240940 A G PHF12 Missense_Mutation p.L417P 0.65 tolerated(0.13) benign(0.106) TCGA-BH-A18V-01 17 37899236 37899236 T A GRB7 Missense_Mutation p.L154Q 0.10 deleterious(0) probably_damaging(0.989) TCGA-BH-A18V-01 17 39847197 39847197 C G EIF1 3'UTR 0.45 TCGA-BH-A18V-01 17 41165360 41165360 C G IFI35 Silent p.P115P 0.19 TCGA-BH-A18V-01 17 42476195 42476195 C G GPATCH8 Missense_Mutation p.D1084H 0.05 tolerated(0.06) unknown(0) TCGA-BH-A18V-01 17 5087301 5087301 C G ZNF594 Missense_Mutation p.G84A 0.55 tolerated(0.72) benign(0.111) TCGA-BH-A18V-01 17 61987969 61987969 C G CSHL1 Intron 0.62 TCGA-BH-A18V-01 17 62026013 62026013 C T SCN4A Silent p.E1034E 0.59 TCGA-BH-A18V-01 17 73949695 73949695 G C ACOX1 Missense_Mutation p.P261A 0.55 tolerated(0.11) benign(0.001) TCGA-BH-A18V-01 17 7579521 7579521 C A TP53 Nonsense_Mutation p.E56* 0.60 TCGA-BH-A18V-01 19 2431811 2431811 G A LMNB2 Silent p.F560F 0.58 TCGA-BH-A18V-01 19 35758446 35758446 C G LSR Missense_Mutation p.R575G 0.23 deleterious(0.04) benign(0.324) TCGA-BH-A18V-01 19 36370329 36370329 G C APLP1 Missense_Mutation p.E648Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-BH-A18V-01 19 39219701 39219701 C - ACTN4 Frame_Shift_Del p.Q829Kfs*27 0.38 TCGA-BH-A18V-01 19 39847654 39847654 C T SAMD4B Silent p.L41L 0.36 TCGA-BH-A18V-01 19 42092866 42092866 C A CEACAM21 3'UTR 0.16 TCGA-BH-A18V-01 19 42410647 42410647 G T ARHGEF1 Missense_Mutation p.D859Y 0.33 deleterious(0) probably_damaging(0.957) TCGA-BH-A18V-01 19 46178065 46178065 C G GIPR Missense_Mutation p.A205G 0.33 tolerated(0.25) benign(0.012) TCGA-BH-A18V-01 19 46828875 46828875 G T HIF3A Missense_Mutation p.E473D 0.32 tolerated(0.15) benign(0.033) TCGA-BH-A18V-01 1 1229567 1229567 C T ACAP3 Missense_Mutation p.V718I 0.53 tolerated(0.15) benign(0.003) TCGA-BH-A18V-01 1 1398002 1398002 G C ATAD3C Missense_Mutation p.D335H 0.07 deleterious(0) probably_damaging(0.995) TCGA-BH-A18V-01 1 151015541 151015541 C T BNIPL Silent p.F181F 0.06 TCGA-BH-A18V-01 1 152279371 152279371 C T FLG Missense_Mutation p.S2664N 0.39 possibly_damaging(0.678) TCGA-BH-A18V-01 1 153954737 153954737 C T RAB13 Intron 0.17 TCGA-BH-A18V-01 1 154524921 154524921 G A UBE2Q1 Silent p.L278L 0.18 TCGA-BH-A18V-01 1 156013916 156013916 C G UBQLN4 Missense_Mutation p.W333C 0.17 deleterious(0) probably_damaging(0.982) TCGA-BH-A18V-01 1 158614978 158614978 C A SPTA1 Missense_Mutation p.Q1398H 0.06 deleterious(0.04) probably_damaging(0.973) TCGA-BH-A18V-01 1 159273955 159273955 A T FCER1A Missense_Mutation p.Y105F 0.54 tolerated(0.07) benign(0.121) TCGA-BH-A18V-01 1 160461134 160461134 G C SLAMF6 Missense_Mutation p.Q143E 0.11 tolerated(1) benign(0.014) TCGA-BH-A18V-01 1 167038307 167038307 G A GPA33 Silent p.V89V 0.12 TCGA-BH-A18V-01 1 168160639 168160639 A G TIPRL Silent p.E139E 0.13 TCGA-BH-A18V-01 1 169509636 169509636 A G F5 Silent p.P1564P 0.14 TCGA-BH-A18V-01 1 176905356 176905356 C T ASTN1 Intron 0.46 TCGA-BH-A18V-01 1 203134380 203134380 C T ADORA1 Intron 0.16 TCGA-BH-A18V-01 1 208201461 208201461 C T PLXNA2 Missense_Mutation p.D1828N 0.05 deleterious(0) probably_damaging(0.989) TCGA-BH-A18V-01 1 246890259 246890259 G C SCCPDH Missense_Mutation p.D86H 0.17 tolerated(0.12) benign(0.013) TCGA-BH-A18V-01 1 32131199 32131199 G T COL16A1 Silent p.G1159G 0.42 TCGA-BH-A18V-01 1 33333876 33333876 G A FNDC5 Silent p.I33I 0.48 TCGA-BH-A18V-01 1 40149627 40149627 C T HPCAL4 Silent p.E120E 0.39 TCGA-BH-A18V-01 1 44084968 44084968 G A PTPRF Silent p.V1552V 0.50 TCGA-BH-A18V-01 1 53675880 53675880 G C CPT2 Missense_Mutation p.L178F 0.17 deleterious(0) benign(0.257) TCGA-BH-A18V-01 1 6311508 6311508 G C GPR153 Missense_Mutation p.A290G 0.76 tolerated(0.09) probably_damaging(0.992) TCGA-BH-A18V-01 1 7805917 7805917 C G CAMTA1 Missense_Mutation p.N1461K 0.60 tolerated(0.05) benign(0.061) TCGA-BH-A18V-01 1 85130215 85130215 G A SSX2IP Silent p.I186I 0.50 TCGA-BH-A18V-01 20 13894543 13894543 G T SEL1L2 Missense_Mutation p.A145D 0.54 deleterious(0) probably_damaging(0.999) TCGA-BH-A18V-01 20 2776651 2776651 A G CPXM1 Missense_Mutation p.Y467H 0.54 tolerated(0.46) benign(0.036) TCGA-BH-A18V-01 20 37547315 37547315 G C PPP1R16B 3'UTR 0.12 TCGA-BH-A18V-01 20 44236640 44236640 G A WFDC9 3'UTR 0.34 TCGA-BH-A18V-01 20 47691854 47691854 G C CSE1L Splice_Site p.X378_splice 0.04 TCGA-BH-A18V-01 20 50092114 50092114 G A NFATC2 Silent p.A472A 0.04 TCGA-BH-A18V-01 20 55101148 55101148 G C FAM209A 3'UTR 0.46 TCGA-BH-A18V-01 20 62187689 62187689 C T C20orf195 Missense_Mutation p.R225W 0.25 deleterious(0.01) possibly_damaging(0.613) TCGA-BH-A18V-01 21 34927217 34927217 T C SON Missense_Mutation p.S1894P 0.30 unknown(0) TCGA-BH-A18V-01 22 29191023 29191023 G C XBP1 3'UTR 0.48 TCGA-BH-A18V-01 22 38982000 38982000 C A FAM227A Intron 0.14 TCGA-BH-A18V-01 22 41752377 41752377 G C ZC3H7B Missense_Mutation p.W805S 0.13 deleterious(0) probably_damaging(0.962) TCGA-BH-A18V-01 22 43634854 43634854 C T SCUBE1 Silent p.K278K 0.39 TCGA-BH-A18V-01 2 103274408 103274408 C G SLC9A2 Silent p.V225V 0.37 TCGA-BH-A18V-01 2 103274454 103274454 G C SLC9A2 Missense_Mutation p.G241R 0.34 deleterious(0) probably_damaging(1) TCGA-BH-A18V-01 2 109403219 109403219 G A CCDC138 5'UTR 0.27 TCGA-BH-A18V-01 2 121981961 121981961 C G TFCP2L1 Missense_Mutation p.E466Q 0.15 tolerated(0.21) benign(0.07) TCGA-BH-A18V-01 2 125204421 125204421 G A CNTNAP5 Silent p.E275E 0.20 TCGA-BH-A18V-01 2 145156093 145156093 G C ZEB2 Missense_Mutation p.N887K 0.05 tolerated(0.61) possibly_damaging(0.681) TCGA-BH-A18V-01 2 152487831 152487831 C G NEB Silent p.L3148L 0.35 TCGA-BH-A18V-01 2 160840563 160840563 G C PLA2R1 Missense_Mutation p.L687V 0.42 deleterious(0) probably_damaging(0.998) TCGA-BH-A18V-01 2 168100303 168100303 G A XIRP2 Missense_Mutation p.V801I 0.29 benign(0.101) TCGA-BH-A18V-01 2 170027091 170027091 A G LRP2 Missense_Mutation p.C3784R 0.30 probably_damaging(0.998) TCGA-BH-A18V-01 2 170366886 170366886 G C KLHL41 Missense_Mutation p.V200L 0.25 tolerated(0.77) benign(0.029) TCGA-BH-A18V-01 2 172944897 172944897 G C METAP1D Missense_Mutation p.E298Q 0.32 deleterious(0.05) benign(0.121) TCGA-BH-A18V-01 2 196740462 196740462 G C DNAH7 Missense_Mutation p.L2075V 0.36 tolerated(0.29) benign(0.271) TCGA-BH-A18V-01 2 210574870 210574870 G A MAP2 Silent p.A1655A 0.38 TCGA-BH-A18V-01 2 21233256 21233256 C A APOB Missense_Mutation p.D2162Y 0.34 benign(0.025) TCGA-BH-A18V-01 2 215815716 215815716 C G ABCA12 Missense_Mutation p.G2247R 0.35 deleterious(0) probably_damaging(1) TCGA-BH-A18V-01 2 231988413 231988413 G C HTR2B Silent p.T22T 0.38 TCGA-BH-A18V-01 2 232577972 232577972 C G PTMA 3'UTR 0.09 TCGA-BH-A18V-01 2 27462243 27462243 C A CAD Missense_Mutation p.F1766L 0.07 tolerated(0.12) benign(0.23) TCGA-BH-A18V-01 2 55093957 55093957 G A EML6 Missense_Mutation p.A663T 0.37 tolerated(0.62) benign(0.003) TCGA-BH-A18V-01 2 62067332 62067332 G C FAM161A Silent p.L269L 0.39 TCGA-BH-A18V-01 2 74643227 74643227 C A C2orf81 Nonsense_Mutation p.E57* 0.38 TCGA-BH-A18V-01 3 10430045 10430045 C T ATP2B2 Missense_Mutation p.A275T 0.70 deleterious(0) probably_damaging(0.999) TCGA-BH-A18V-01 3 105260577 105260577 G C ALCAM Missense_Mutation p.S320T 0.59 tolerated(0.28) benign(0.012) TCGA-BH-A18V-01 3 105397410 105397410 C G CBLB Missense_Mutation p.D812H 0.66 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-BH-A18V-01 3 109213113 109213113 C G RP11-702L6.4 RNA 0.65 TCGA-BH-A18V-01 3 124456915 124456915 G C UMPS Missense_Mutation p.D271H 0.29 deleterious(0.01) benign(0.061) TCGA-BH-A18V-01 3 124632415 124632415 A C MUC13 Missense_Mutation p.C359G 0.34 deleterious(0) probably_damaging(0.995) TCGA-BH-A18V-01 3 132247140 132247140 C G DNAJC13 Silent p.L2163L 0.51 TCGA-BH-A18V-01 3 139074558 139074558 C G COPB2 3'Flank 0.38 TCGA-BH-A18V-01 3 160804030 160804030 G T B3GALNT1 Silent p.P171P 0.30 TCGA-BH-A18V-01 3 169565908 169565908 C A LRRC31 Missense_Mutation p.A443S 0.26 deleterious(0.04) benign(0.213) TCGA-BH-A18V-01 3 169684617 169684617 G A SEC62 Missense_Mutation p.E3K 0.24 deleterious(0.01) benign(0.345) TCGA-BH-A18V-01 3 169802102 169802102 G C GPR160 Silent p.L114L 0.22 TCGA-BH-A18V-01 3 173999167 173999167 C A NLGN1 3'UTR 0.27 TCGA-BH-A18V-01 3 184008058 184008058 G T ECE2 Missense_Mutation p.D641Y 0.33 deleterious(0.05) possibly_damaging(0.908) TCGA-BH-A18V-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.31 tolerated(0.19) possibly_damaging(0.569) TCGA-BH-A18V-01 3 197402332 197402332 T C KIAA0226 Missense_Mutation p.I901V 0.22 deleterious(0.04) possibly_damaging(0.557) TCGA-BH-A18V-01 3 38674834 38674834 C G SCN5A 5'UTR 0.92 TCGA-BH-A18V-01 3 51749276 51749276 C G GRM2 Missense_Mutation p.P496R 0.61 deleterious(0) possibly_damaging(0.558) TCGA-BH-A18V-01 3 51751674 51751674 G C GRM2 Missense_Mutation p.V796L 0.14 tolerated(0.06) benign(0.176) TCGA-BH-A18V-01 3 51978147 51978147 G C PARP3 Missense_Mutation p.E83Q 0.67 deleterious(0.03) benign(0.009) TCGA-BH-A18V-01 3 52563265 52563265 G T NT5DC2 Silent p.V106V 0.12 TCGA-BH-A18V-01 3 73114577 73114577 C G PPP4R2 Missense_Mutation p.P320A 0.78 tolerated(0.18) benign(0.006) TCGA-BH-A18V-01 3 9470532 9470532 G C SETD5 5'UTR 0.14 TCGA-BH-A18V-01 4 102946423 102946423 G A BANK1 Missense_Mutation p.E451K 0.40 tolerated(0.2) benign(0.011) TCGA-BH-A18V-01 4 144359440 144359440 G C GAB1 Silent p.S294S 0.07 TCGA-BH-A18V-01 4 155156862 155156862 G C DCHS2 Missense_Mutation p.S2526C 0.59 deleterious(0) possibly_damaging(0.847) TCGA-BH-A18V-01 4 155510695 155510695 C A FGA Missense_Mutation p.G25V 0.53 deleterious(0.02) probably_damaging(0.953) TCGA-BH-A18V-01 4 156135095 156135095 G C NPY2R Missense_Mutation p.G2R 0.49 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-BH-A18V-01 4 26364113 26364113 C T RBPJ Intron 0.56 TCGA-BH-A18V-01 4 3952903 3952903 T G FAM86EP Intron 0.07 TCGA-BH-A18V-01 4 69682121 69682121 T A UGT2B10 Missense_Mutation p.D128E 0.58 tolerated(0.4) benign(0.068) TCGA-BH-A18V-01 4 79188077 79188077 G A FRAS1 Silent p.L259L 0.51 TCGA-BH-A18V-01 4 83748786 83748786 C A SEC31A Splice_Site p.X1010_splice 0.05 TCGA-BH-A18V-01 4 96222841 96222841 C G UNC5C Missense_Mutation p.G136R 0.45 deleterious(0.03) possibly_damaging(0.728) TCGA-BH-A18V-01 5 108168625 108168625 T C FER Missense_Mutation p.I121T 0.05 deleterious(0.02) benign(0.094) TCGA-BH-A18V-01 5 128797410 128797410 C A ADAMTS19 Missense_Mutation p.P230H 0.13 tolerated(0.15) benign(0.142) TCGA-BH-A18V-01 5 14498254 14498254 G C TRIO Missense_Mutation p.V2702L 0.04 unknown(0) TCGA-BH-A18V-01 5 160973680 160973680 C A GABRB2 5'UTR 0.51 TCGA-BH-A18V-01 5 16673900 16673900 C T MYO10 Missense_Mutation p.R1688Q 0.11 tolerated(1) probably_damaging(0.994) TCGA-BH-A18V-01 5 171533651 171533651 G A STK10 Missense_Mutation p.P254L 0.53 deleterious(0) probably_damaging(0.999) TCGA-BH-A18V-01 5 176721686 176721686 G A NSD1 Silent p.L2439L 0.49 TCGA-BH-A18V-01 5 179134161 179134161 G C CANX Missense_Mutation p.D92H 0.52 deleterious(0) probably_damaging(0.983) TCGA-BH-A18V-01 5 180669320 180669320 C A GNB2L1 Silent p.L45L 0.10 TCGA-BH-A18V-01 5 21975200 21975200 C T CDH12 Missense_Mutation p.G176S 0.10 deleterious(0.02) probably_damaging(1) TCGA-BH-A18V-01 5 40767578 40767578 T G PRKAA1 Missense_Mutation p.K286Q 0.44 tolerated(0.21) possibly_damaging(0.471) TCGA-BH-A18V-01 5 50128622 50128622 C G PARP8 Missense_Mutation p.N747K 0.42 tolerated(0.06) possibly_damaging(0.9) TCGA-BH-A18V-01 5 54429340 54429340 G C CDC20B Silent p.V199V 0.52 TCGA-BH-A18V-01 5 54696232 54696232 T C SKIV2L2 Missense_Mutation p.C822R 0.64 deleterious(0.01) possibly_damaging(0.532) TCGA-BH-A18V-01 5 7820754 7820754 C G ADCY2 Silent p.V1025V 0.23 TCGA-BH-A18V-01 5 80071554 80071554 A T MSH3 Silent p.P765P 0.50 TCGA-BH-A18V-01 5 870670 870670 G A BRD9 Silent p.D481D 0.13 TCGA-BH-A18V-01 5 889817 889817 G C BRD9 Intron 0.11 TCGA-BH-A18V-01 6 102483412 102483412 C G GRIK2 Missense_Mutation p.S761C 0.69 deleterious(0) probably_damaging(0.964) TCGA-BH-A18V-01 6 127775010 127775019 CATAATCTTC - KIAA0408 Frame_Shift_Del p.W36Cfs*5 0.24 TCGA-BH-A18V-01 6 158484821 158484821 A G SYNJ2 Splice_Site p.X376_splice 0.53 TCGA-BH-A18V-01 6 161781200 161781200 C G PARK2 Missense_Mutation p.R402P 0.03 deleterious(0) probably_damaging(0.999) TCGA-BH-A18V-01 6 26251947 26251947 G A HIST1H2BH Silent p.Q23Q 0.26 TCGA-BH-A18V-01 6 30459143 30459151 CCATGTGCA - HLA-E In_Frame_Del p.C280_Q283delinsW 0.36 TCGA-BH-A18V-01 6 32023670 32023670 C T TNXB Missense_Mutation p.E2809K 0.59 benign(0.128) TCGA-BH-A18V-01 6 55739309 55739309 A G BMP5 Missense_Mutation p.S119P 0.34 tolerated(0.3) benign(0.008) TCGA-BH-A18V-01 7 103294652 103294652 C G RELN Missense_Mutation p.G481A 0.04 deleterious(0.04) probably_damaging(0.997) TCGA-BH-A18V-01 7 126173298 126173298 C T GRM8 Nonsense_Mutation p.W713* 0.37 TCGA-BH-A18V-01 7 128038635 128038635 G C IMPDH1 Missense_Mutation p.L303V 0.54 tolerated(0.07) probably_damaging(0.999) TCGA-BH-A18V-01 7 134927510 134927538 GCATTGTCTCTGTCTATCCTCAGTGGCAG - STRA8 Splice_Site p.X87_splice 0.14 TCGA-BH-A18V-01 7 44153560 44153560 C G AEBP1 Silent p.T1059T 0.21 TCGA-BH-A18V-01 7 7273940 7273940 A G C1GALT1 5'UTR 0.53 TCGA-BH-A18V-01 7 77558499 77558510 CAGAATCTGAAA - PHTF2 In_Frame_Del p.S366_E369del 0.23 TCGA-BH-A18V-01 7 91718833 91718833 A C AKAP9 Missense_Mutation p.K3116N 0.31 benign(0.004) TCGA-BH-A18V-01 7 95499210 95499210 A G DYNC1I1 Silent p.K147K 0.06 TCGA-BH-A18V-01 7 96650328 96650328 T G DLX5 Missense_Mutation p.K197T 0.34 deleterious(0) probably_damaging(0.932) TCGA-BH-A18V-01 7 96651583 96651583 A G DLX5 Silent p.L152L 0.32 TCGA-BH-A18V-01 8 100830977 100830977 C G VPS13B Missense_Mutation p.L2853V 0.24 deleterious(0) benign(0.364) TCGA-BH-A18V-01 8 11400826 11400826 A G BLK Silent p.Q31Q 0.22 TCGA-BH-A18V-01 8 125551447 125551447 G T NDUFB9 Missense_Mutation p.G7V 0.19 tolerated(0.11) benign(0.001) TCGA-BH-A18V-01 8 143618431 143618431 C A BAI1 Missense_Mutation p.H1218Q 0.30 tolerated(0.56) benign(0.111) TCGA-BH-A18V-01 8 145110076 145110076 G C OPLAH Missense_Mutation p.I755M 0.53 tolerated(0.07) benign(0.309) TCGA-BH-A18V-01 8 27099197 27099197 G A STMN4 Nonsense_Mutation p.Q63* 0.50 TCGA-BH-A18V-01 8 30614364 30614364 C G UBXN8 RNA 0.51 TCGA-BH-A18V-01 8 67589946 67589946 G A C8orf44 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0.03) benign(0.001) TCGA-BH-A18V-01 9 104032342 104032342 A C LPPR1 Missense_Mutation p.T82P 0.72 deleterious(0.02) possibly_damaging(0.723) TCGA-BH-A18V-01 9 107288610 107288610 A T OR13C4 Missense_Mutation p.I294K 0.38 deleterious(0) possibly_damaging(0.812) TCGA-BH-A18V-01 9 111853251 111853251 C G TMEM245 Missense_Mutation p.Q367H 0.37 deleterious(0) probably_damaging(0.987) TCGA-BH-A18V-01 9 116241773 116241773 C T RGS3 Nonsense_Mutation p.Q140* 0.37 TCGA-BH-A18V-01 9 127620332 127620332 C G RPL35 Missense_Mutation p.K79N 0.73 tolerated(0.23) benign(0.052) TCGA-BH-A18V-01 9 136200568 136200568 C G SURF6 Missense_Mutation p.E127Q 0.38 tolerated(0.11) benign(0.046) TCGA-BH-A18V-01 9 137007069 137007069 A T WDR5 Splice_Site p.X89_splice 0.34 TCGA-BH-A18V-01 9 139390731 139390731 T A NOTCH1 Missense_Mutation p.Q2487L 0.85 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A18V-01 9 139701383 139701383 C T CCDC183 Intron 0.34 TCGA-BH-A18V-01 9 139946068 139946068 G C ENTPD2 Missense_Mutation p.Q94E 0.28 tolerated(0.43) benign(0.009) TCGA-BH-A18V-01 9 140059839 140059839 G C GRIN1 Intron 0.50 TCGA-BH-A18V-01 9 27950483 27950483 C G LINGO2 Missense_Mutation p.D63H 0.32 deleterious(0) probably_damaging(0.994) TCGA-BH-A18V-01 9 6532874 6532874 A G GLDC 3'UTR 0.35 TCGA-BH-A18V-01 9 79954717 79954717 G C VPS13A Missense_Mutation p.G2222R 0.54 deleterious(0) possibly_damaging(0.892) TCGA-BH-A18V-01 9 97522822 97522822 G A C9orf3 Missense_Mutation p.E253K 0.76 tolerated(0.26) benign(0.062) TCGA-BH-A18V-01 X 134023159 134023159 G C MOSPD1 3'UTR 0.55 TCGA-BH-A18V-01 X 134947485 134947485 A T CT45A5 Silent p.P154P 0.68 TCGA-BH-A18V-01 X 15381257 15381257 G C FIGF Missense_Mutation p.T92S 0.59 deleterious(0.01) benign(0.015) TCGA-BH-A18V-01 X 18918818 18918818 C G PHKA2 Splice_Site p.X1010_splice 0.17 TCGA-BH-A18V-01 X 19389165 19389165 C G MAP3K15 Missense_Mutation p.R1104S 0.44 deleterious(0) possibly_damaging(0.844) TCGA-BH-A18V-01 X 47086816 47086816 G T CDK16 Missense_Mutation p.M515I 0.54 deleterious(0.01) probably_damaging(0.975) TCGA-BH-A18V-01 X 47101698 47101698 C T USP11 Missense_Mutation p.P509L 0.60 deleterious(0.01) probably_damaging(1) TCGA-BH-A18V-01 X 48244061 48244061 C G SSX4 Missense_Mutation p.S43W 0.27 deleterious(0.01) benign(0.029) TCGA-BH-A18V-01 X 48270249 48270249 G C SSX4B Missense_Mutation p.S43W 0.25 deleterious(0.01) benign(0.029) TCGA-BH-A18V-01 X 50053928 50053928 C A CCNB3 Missense_Mutation p.T920N 0.57 tolerated(0.55) benign(0.111) TCGA-BH-A1EO-01 10 37520449 37520451 CTC - ANKRD30A 3'UTR 0.47 TCGA-BH-A1EO-01 11 5153834 5153834 C T OR52A5 Silent p.A13A 0.04 TCGA-BH-A1EO-01 11 5443900 5443900 C T OR51Q1 Missense_Mutation p.A157V 0.32 tolerated(0.67) benign(0.08) TCGA-BH-A1EO-01 11 57995755 57995755 C T OR10Q1 Missense_Mutation p.R198H 0.35 tolerated(1) benign(0.004) TCGA-BH-A1EO-01 12 106850925 106850925 G A POLR3B Missense_Mutation p.R768H 0.21 deleterious(0) probably_damaging(0.983) TCGA-BH-A1EO-01 12 54686775 54686775 G A NFE2 Missense_Mutation p.R169C 0.42 deleterious(0.03) benign(0.009) TCGA-BH-A1EO-01 12 78225321 78225321 C G NAV3 Missense_Mutation p.P27R 0.44 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-BH-A1EO-01 12 80647295 80647295 C T OTOGL Silent p.C436C 0.23 TCGA-BH-A1EO-01 13 111927898 111927898 G A ARHGEF7 Missense_Mutation p.R452Q 0.15 deleterious(0) benign(0.262) TCGA-BH-A1EO-01 14 74179741 74179741 C T PNMA1 Missense_Mutation p.R201Q 0.53 tolerated(0.08) possibly_damaging(0.685) TCGA-BH-A1EO-01 15 23300098 23300098 C T HERC2P2 RNA 0.17 TCGA-BH-A1EO-01 15 89074906 89074906 G A DET1 Nonsense_Mutation p.R22* 0.24 TCGA-BH-A1EO-01 16 48125032 48125032 G A ABCC12 Missense_Mutation p.S1095L 0.03 tolerated(0.31) benign(0.001) TCGA-BH-A1EO-01 16 89818569 89818569 C T FANCA Missense_Mutation p.E1015K 0.43 tolerated(0.74) benign(0.001) TCGA-BH-A1EO-01 17 21730925 21730925 G T UBBP4 Missense_Mutation p.G76V 0.25 tolerated(0.06) probably_damaging(0.973) TCGA-BH-A1EO-01 17 3801075 3801075 C A P2RX1 3'UTR 0.30 TCGA-BH-A1EO-01 17 43531287 43531287 G A PLEKHM1 Missense_Mutation p.P644L 0.25 deleterious(0.05) benign(0.003) TCGA-BH-A1EO-01 18 12125779 12125779 G A ANKRD62 Missense_Mutation p.M653I 0.43 tolerated(0.52) benign(0.023) TCGA-BH-A1EO-01 18 63547856 63547856 G A CDH7 Missense_Mutation p.R695Q 0.41 tolerated(0.09) probably_damaging(0.909) TCGA-BH-A1EO-01 19 10475348 10475348 C T TYK2 Missense_Mutation p.E437K 0.30 deleterious(0) possibly_damaging(0.728) TCGA-BH-A1EO-01 19 17329065 17329065 G A USE1 Intron 0.30 TCGA-BH-A1EO-01 19 50302640 50302640 G C AP2A1 Missense_Mutation p.R341P 0.38 deleterious(0) possibly_damaging(0.717) TCGA-BH-A1EO-01 19 52381767 52381767 C A ZNF577 Missense_Mutation p.G21V 0.30 tolerated(0.17) benign(0.004) TCGA-BH-A1EO-01 19 6669893 6669893 C A TNFSF14 Missense_Mutation p.W63L 0.28 tolerated(0.14) benign(0.007) TCGA-BH-A1EO-01 1 157805886 157805886 C A CD5L Missense_Mutation p.V39L 0.09 tolerated(0.08) benign(0.128) TCGA-BH-A1EO-01 1 158152850 158152850 C T CD1D Nonsense_Mutation p.R264* 0.35 TCGA-BH-A1EO-01 1 243828162 243828162 G A AKT3 Nonsense_Mutation p.R66* 0.44 TCGA-BH-A1EO-01 1 27057934 27057934 C T ARID1A Nonsense_Mutation p.Q548* 0.43 TCGA-BH-A1EO-01 1 40235483 40235483 G A OXCT2 Missense_Mutation p.T482M 0.06 deleterious(0.01) possibly_damaging(0.67) TCGA-BH-A1EO-01 20 36641436 36641436 T A TTI1 Missense_Mutation p.K261N 0.33 tolerated(0.16) benign(0.005) TCGA-BH-A1EO-01 20 57782030 57782030 C T ZNF831 Nonsense_Mutation p.R1316* 0.33 TCGA-BH-A1EO-01 21 11039424 11039424 T C BAGE2 RNA 0.05 TCGA-BH-A1EO-01 21 28306783 28306783 A T ADAMTS5 Splice_Site p.X563_splice 0.28 TCGA-BH-A1EO-01 21 41423893 41423893 G A DSCAM Missense_Mutation p.P1726L 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.624) TCGA-BH-A1EO-01 21 42830679 42830679 C T MX1 Silent p.P661P 0.22 TCGA-BH-A1EO-01 21 46047184 46047184 C T KRTAP10-9 Silent p.C32C 0.21 TCGA-BH-A1EO-01 21 47974150 47974150 G A DIP2A Silent p.L1033L 0.22 TCGA-BH-A1EO-01 3 129370110 129370110 G A TMCC1 3'UTR 0.33 TCGA-BH-A1EO-01 3 130285633 130285633 C T COL6A6 Missense_Mutation p.T457M 0.44 deleterious(0.05) possibly_damaging(0.737) TCGA-BH-A1EO-01 3 4854831 4854831 G T ITPR1 Missense_Mutation p.G2477C 0.14 tolerated(0.08) benign(0.193) TCGA-BH-A1EO-01 4 177138077 177138077 G - ASB5 Frame_Shift_Del p.L252Cfs*2 0.19 TCGA-BH-A1EO-01 4 8469962 8469962 C T TRMT44 Nonsense_Mutation p.R606* 0.12 TCGA-BH-A1EO-01 5 149588999 149588999 G A SLC6A7 Missense_Mutation p.D578N 0.32 tolerated(0.14) probably_damaging(0.971) TCGA-BH-A1EO-01 5 176078754 176078754 G A TSPAN17 Splice_Site p.X47_splice 0.11 TCGA-BH-A1EO-01 5 176737473 176737473 C T MXD3 Missense_Mutation p.R92Q 0.11 deleterious(0) probably_damaging(1) TCGA-BH-A1EO-01 5 178994480 178994481 - CGAG RUFY1 Frame_Shift_Ins p.W210Sfs*23 0.38 TCGA-BH-A1EO-01 5 72866470 72866470 G A UTP15 Missense_Mutation p.V203I 0.17 tolerated(0.67) benign(0.019) TCGA-BH-A1EO-01 7 128494721 128494721 G T FLNC Missense_Mutation p.V2328L 0.33 tolerated(0.38) probably_damaging(0.976) TCGA-BH-A1EO-01 7 150752460 150752460 C A CDK5 Missense_Mutation p.V162L 0.42 deleterious(0) probably_damaging(0.999) TCGA-BH-A1EO-01 7 84751129 84751129 T G SEMA3D Missense_Mutation p.M27L 0.09 tolerated(1) benign(0) TCGA-BH-A1EO-01 9 22451851 22451851 A T DMRTA1 Missense_Mutation p.S486C 0.20 deleterious(0.03) possibly_damaging(0.635) TCGA-BH-A1EO-01 X 104464131 104464131 G A TEX13A Missense_Mutation p.L249F 0.29 tolerated(0.16) possibly_damaging(0.86) TCGA-BH-A1EO-01 X 123554340 123554340 G A TENM1 Silent p.G1601G 0.16 TCGA-BH-A1ET-01 10 30602780 30602780 G A MTPAP Nonsense_Mutation p.R503* 0.23 TCGA-BH-A1ET-01 11 107518302 107518302 G C ELMOD1 Missense_Mutation p.G177R 0.29 deleterious(0) probably_damaging(1) TCGA-BH-A1ET-01 11 67010479 67010479 G T KDM2A Splice_Site p.X494_splice 0.28 TCGA-BH-A1ET-01 11 73717218 73717218 C T UCP3 Silent p.A111A 0.36 TCGA-BH-A1ET-01 12 110811920 110811920 G A ANAPC7 3'UTR 0.32 TCGA-BH-A1ET-01 12 112687979 112687979 G A HECTD4 Missense_Mutation p.R1161C 0.11 probably_damaging(0.983) TCGA-BH-A1ET-01 12 57849486 57849486 A C INHBE Missense_Mutation p.H56P 0.27 deleterious(0) possibly_damaging(0.659) TCGA-BH-A1ET-01 12 89744753 89744753 A G DUSP6 Silent p.N150N 0.43 TCGA-BH-A1ET-01 17 10436640 10436640 G T MYH2 Missense_Mutation p.F801L 0.24 tolerated(0.49) benign(0.001) TCGA-BH-A1ET-01 18 10855367 10855367 T C PIEZO2 Missense_Mutation p.N301D 0.20 tolerated(0.85) benign(0.002) TCGA-BH-A1ET-01 19 46815779 46815779 G A HIF3A Silent p.Q298Q 0.30 TCGA-BH-A1ET-01 1 156374288 156374288 G C C1orf61 3'UTR 0.28 TCGA-BH-A1ET-01 1 156565449 156565449 A T GPATCH4 Missense_Mutation p.N228K 0.05 tolerated(0.08) benign(0.079) TCGA-BH-A1ET-01 1 160850420 160850420 C T ITLN1 Missense_Mutation p.D215N 0.41 tolerated(0.26) benign(0.112) TCGA-BH-A1ET-01 1 229567787 229567787 G T ACTA1 Missense_Mutation p.N254K 0.37 deleterious_low_confidence(0.04) probably_damaging(0.983) TCGA-BH-A1ET-01 20 61981873 61981873 G A CHRNA4 Missense_Mutation p.P297L 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A1ET-01 2 33045916 33045916 T C TTC27 Missense_Mutation p.S815P 0.06 tolerated(0.22) benign(0.001) TCGA-BH-A1ET-01 2 88857216 88857216 T C EIF2AK3 3'UTR 0.39 TCGA-BH-A1ET-01 3 137483952 137483952 G A SOX14 Missense_Mutation p.G109D 0.36 tolerated(0.15) benign(0.223) TCGA-BH-A1ET-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.36 deleterious(0.04) probably_damaging(0.96) TCGA-BH-A1ET-01 3 66431242 66431242 C T LRIG1 Silent p.V938V 0.33 TCGA-BH-A1ET-01 4 152571037 152571037 A C FAM160A1 Missense_Mutation p.K615T 0.29 deleterious(0) possibly_damaging(0.697) TCGA-BH-A1ET-01 5 132197501 132197501 C T GDF9 Missense_Mutation p.C382Y 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A1ET-01 5 140532071 140532071 C A PCDHB6 Missense_Mutation p.Q745K 0.34 deleterious(0.03) benign(0.144) TCGA-BH-A1ET-01 6 11191135 11191135 C T NEDD9 Missense_Mutation p.V323I 0.35 tolerated(0.69) benign(0.003) TCGA-BH-A1ET-01 6 97247418 97247418 T C GPR63 Missense_Mutation p.T64A 0.40 tolerated(0.15) benign(0.027) TCGA-BH-A1ET-01 7 4308309 4308309 G A SDK1 3'UTR 0.33 TCGA-BH-A1ET-01 8 125047696 125047696 G A FER1L6 Splice_Site p.X822_splice 0.36 TCGA-BH-A1ET-01 8 125076805 125076805 A G FER1L6 Silent p.G1182G 0.35 TCGA-BH-A1ET-01 8 48743255 48743255 C T PRKDC Missense_Mutation p.V2769I 0.35 benign(0.004) TCGA-BH-A1ET-01 9 123476221 123476221 G A MEGF9 Missense_Mutation p.A139V 0.34 tolerated_low_confidence(0.2) benign(0) TCGA-BH-A1ET-01 9 123476222 123476222 C A MEGF9 Missense_Mutation p.A139S 0.33 tolerated_low_confidence(0.28) benign(0.007) TCGA-BH-A1ET-01 9 140057401 140057401 T C GRIN1 Missense_Mutation p.M727T 0.12 deleterious(0) probably_damaging(0.915) TCGA-BH-A1EU-01 10 116698270 116698270 G T TRUB1 Silent p.L86L 0.25 TCGA-BH-A1EU-01 10 70917823 70917823 T C VPS26A Missense_Mutation p.I136T 0.07 tolerated(0.06) benign(0.099) TCGA-BH-A1EU-01 11 120833362 120833362 C T GRIK4 Silent p.T746T 0.21 TCGA-BH-A1EU-01 11 89018003 89018003 C T TYR Missense_Mutation p.A416V 0.27 deleterious(0) benign(0.345) TCGA-BH-A1EU-01 13 25670833 25670833 G A PABPC3 Missense_Mutation p.R166H 0.31 deleterious(0.01) benign(0.029) TCGA-BH-A1EU-01 14 100604268 100604268 C T EVL Intron 0.11 TCGA-BH-A1EU-01 16 3350458 3350458 G A TIGD7 Silent p.L53L 0.04 TCGA-BH-A1EU-01 16 89696849 89696849 G T DPEP1 Missense_Mutation p.V11L 0.38 tolerated(0.4) benign(0.006) TCGA-BH-A1EU-01 17 17398631 17398631 G T RASD1 Missense_Mutation p.H218Q 0.17 tolerated(0.24) benign(0.004) TCGA-BH-A1EU-01 17 29195391 29195391 A T ATAD5 Missense_Mutation p.R1092W 0.08 deleterious(0) possibly_damaging(0.765) TCGA-BH-A1EU-01 17 29195398 29195398 A T ATAD5 Missense_Mutation p.N1094I 0.08 deleterious(0) benign(0.183) TCGA-BH-A1EU-01 1 100983989 100983989 A G CDC14A 3'UTR 0.29 TCGA-BH-A1EU-01 1 100984021 100984021 A T CDC14A 3'UTR 0.30 TCGA-BH-A1EU-01 1 152276139 152276139 C T FLG Silent p.Q3741Q 0.21 TCGA-BH-A1EU-01 1 208215621 208215621 G A PLXNA2 Missense_Mutation p.R1370C 0.02 deleterious(0.01) probably_damaging(0.995) TCGA-BH-A1EU-01 1 225230657 225230657 T C DNAH14 Missense_Mutation p.F556L 0.06 tolerated(0.47) benign(0) TCGA-BH-A1EU-01 21 44182234 44182234 A G PDE9A Missense_Mutation p.N376S 0.27 deleterious(0.02) possibly_damaging(0.747) TCGA-BH-A1EU-01 22 29706530 29706530 T C GAS2L1 Silent p.F245F 0.24 TCGA-BH-A1EU-01 2 27460602 27460602 C A CAD Missense_Mutation p.A1527D 0.25 deleterious(0) possibly_damaging(0.776) TCGA-BH-A1EU-01 3 138213744 138213744 T C CEP70 3'UTR 0.22 TCGA-BH-A1EU-01 3 160283041 160283041 T C KPNA4 Silent p.Q10Q 0.23 TCGA-BH-A1EU-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.29 tolerated(0.44) benign(0.085) TCGA-BH-A1EU-01 3 46307328 46307328 C - CCR3 Frame_Shift_Del p.L248* 0.22 TCGA-BH-A1EU-01 3 58097580 58097582 GGC - FLNB In_Frame_Del p.A850del 0.33 TCGA-BH-A1EU-01 4 102117231 102117231 A G PPP3CA Missense_Mutation p.V34A 0.13 deleterious(0.03) possibly_damaging(0.558) TCGA-BH-A1EU-01 4 123156157 123156157 G A KIAA1109 Missense_Mutation p.E1185K 0.17 probably_damaging(0.91) TCGA-BH-A1EU-01 4 128854182 128854182 A G MFSD8 Missense_Mutation p.V274A 0.11 tolerated(0.09) benign(0.035) TCGA-BH-A1EU-01 5 76358903 76358903 T G AGGF1 Missense_Mutation p.H657Q 0.22 tolerated(0.63) possibly_damaging(0.717) TCGA-BH-A1EU-01 7 100160261 100160261 C T AGFG2 Missense_Mutation p.T348M 0.20 tolerated(0.14) benign(0.029) TCGA-BH-A1EU-01 7 100170374 100170374 C T SAP25 Missense_Mutation p.G73E 0.06 tolerated(0.05) probably_damaging(0.988) TCGA-BH-A1EU-01 7 157177560 157177560 G - DNAJB6 Splice_Site p.X160_splice 0.12 TCGA-BH-A1EU-01 7 99700554 99700554 C G AP4M1 Missense_Mutation p.L108V 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-BH-A1EU-01 8 26365461 26365461 G A PNMA2 Missense_Mutation p.R271W 0.18 tolerated(0.05) benign(0.019) TCGA-BH-A1EU-01 8 67356944 67356944 C T ADHFE1 Missense_Mutation p.T105M 0.27 deleterious(0.04) possibly_damaging(0.631) TCGA-BH-A1EU-01 9 113563026 113563026 G A MUSK Missense_Mutation p.V790M 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A1EU-01 9 128117049 128117049 G A GAPVD1 Missense_Mutation p.R1256Q 0.03 tolerated(0.13) benign(0.074) TCGA-BH-A1EU-01 X 63405967 63405967 A G AMER1 3'UTR 0.07 TCGA-BH-A1EV-01 10 102749027 102749027 C T C10orf2 Missense_Mutation p.R354C 0.21 deleterious(0.01) possibly_damaging(0.772) TCGA-BH-A1EV-01 10 115663441 115663441 C T NHLRC2 Silent p.D550D 0.10 TCGA-BH-A1EV-01 10 123842793 123842793 A G TACC2 Missense_Mutation p.T260A 0.35 benign(0.013) TCGA-BH-A1EV-01 10 15107599 15107599 G A OLAH Missense_Mutation p.R193H 0.18 tolerated(0.34) benign(0.032) TCGA-BH-A1EV-01 10 35464529 35464529 C T CREM Intron 0.17 TCGA-BH-A1EV-01 10 48426562 48426562 G C GDF10 3'UTR 0.15 TCGA-BH-A1EV-01 10 49659056 49659056 G A ARHGAP22 Silent p.S388S 0.26 TCGA-BH-A1EV-01 10 61829925 61829925 C G ANK3 Missense_Mutation p.E3572Q 0.20 benign(0.064) TCGA-BH-A1EV-01 10 61835405 61835405 A T ANK3 Missense_Mutation p.I1745N 0.18 benign(0.094) TCGA-BH-A1EV-01 10 88123815 88123815 C G GRID1 Missense_Mutation p.V40L 0.18 tolerated(0.27) benign(0.092) TCGA-BH-A1EV-01 11 107925662 107925662 G C CUL5 Missense_Mutation p.E254Q 0.05 tolerated(0.39) benign(0.018) TCGA-BH-A1EV-01 11 107975024 107975024 G C CUL5 Missense_Mutation p.M752I 0.12 tolerated(0.1) benign(0.152) TCGA-BH-A1EV-01 11 126136424 126136424 T C SRPR Missense_Mutation p.T263A 0.12 tolerated(0.59) benign(0.001) TCGA-BH-A1EV-01 11 47436635 47436635 C G SLC39A13 Missense_Mutation p.P322R 0.32 deleterious(0) probably_damaging(1) TCGA-BH-A1EV-01 11 57467533 57467533 C T ZDHHC5 3'UTR 0.18 TCGA-BH-A1EV-01 11 70331543 70331543 G T SHANK2 Missense_Mutation p.P1620T 0.24 deleterious(0.02) possibly_damaging(0.641) TCGA-BH-A1EV-01 11 92533525 92533525 G C FAT3 Missense_Mutation p.G2449A 0.18 probably_damaging(1) TCGA-BH-A1EV-01 11 96074861 96074861 C T MAML2 Missense_Mutation p.D67N 0.19 probably_damaging(0.945) TCGA-BH-A1EV-01 12 54339116 54339116 G A HOXC13 3'UTR 0.23 TCGA-BH-A1EV-01 12 80770937 80770937 C T OTOGL Silent p.I2263I 0.20 TCGA-BH-A1EV-01 13 107220001 107220001 C T ARGLU1 Silent p.V89V 0.29 TCGA-BH-A1EV-01 13 21732095 21732095 G C SKA3 Missense_Mutation p.P362R 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A1EV-01 13 99853653 99853654 - A UBAC2 Intron 0.31 TCGA-BH-A1EV-01 14 105834442 105834442 C A PACS2 Missense_Mutation p.F206L 0.13 deleterious(0.02) probably_damaging(0.969) TCGA-BH-A1EV-01 14 33015522 33015522 G A AKAP6 Missense_Mutation p.E555K 0.19 deleterious(0.04) benign(0.285) TCGA-BH-A1EV-01 14 55169329 55169329 C T SAMD4A Intron 0.06 TCGA-BH-A1EV-01 14 93943917 93943917 G A UNC79 5'UTR 0.18 TCGA-BH-A1EV-01 15 34394663 34394663 C G PGBD4 5'UTR 0.26 TCGA-BH-A1EV-01 15 65694819 65694819 G A IGDCC4 Silent p.I190I 0.26 TCGA-BH-A1EV-01 15 75968731 75968731 C T CSPG4 Silent p.V2043V 0.30 TCGA-BH-A1EV-01 15 86806012 86806012 G A AGBL1 Missense_Mutation p.D279N 0.22 deleterious(0.03) benign(0.223) TCGA-BH-A1EV-01 16 10576133 10576133 T C ATF7IP2 3'UTR 0.15 TCGA-BH-A1EV-01 17 38062474 38062474 C T GSDMB Missense_Mutation p.D260N 0.03 deleterious(0.04) benign(0.263) TCGA-BH-A1EV-01 17 38172514 38172514 A G CSF3 Missense_Mutation p.E78G 0.07 deleterious(0) probably_damaging(0.989) TCGA-BH-A1EV-01 17 61657280 61657280 C A DCAF7 Intron 0.10 TCGA-BH-A1EV-01 17 74732502 74732502 G C SRSF2 Missense_Mutation p.S136C 0.24 deleterious(0.01) unknown(0) TCGA-BH-A1EV-01 18 59828374 59828374 C A PIGN Silent p.P71P 0.29 TCGA-BH-A1EV-01 18 64239462 64239462 C T CDH19 5'UTR 0.38 TCGA-BH-A1EV-01 18 8296428 8296428 G A PTPRM Silent p.K939K 0.25 TCGA-BH-A1EV-01 19 41601717 41601717 C G CYP2A13 Missense_Mutation p.F452L 0.35 tolerated(0.12) benign(0.076) TCGA-BH-A1EV-01 19 42946982 42946982 C T CXCL17 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-BH-A1EV-01 19 49113164 49113164 C A FAM83E Missense_Mutation p.D243Y 0.71 deleterious(0) probably_damaging(0.992) TCGA-BH-A1EV-01 19 55750982 55750982 C T PPP6R1 Missense_Mutation p.E545K 0.16 tolerated(0.3) possibly_damaging(0.629) TCGA-BH-A1EV-01 1 10421003 10421003 G C KIF1B Missense_Mutation p.E1312Q 0.29 deleterious(0.05) possibly_damaging(0.622) TCGA-BH-A1EV-01 1 10477061 10477061 C T PGD Missense_Mutation p.R288W 0.41 deleterious(0) probably_damaging(1) TCGA-BH-A1EV-01 1 156640285 156640285 G A NES Missense_Mutation p.A1232V 0.33 tolerated(0.07) benign(0.168) TCGA-BH-A1EV-01 1 158648273 158648273 C T SPTA1 Missense_Mutation p.A244T 0.28 tolerated(0.4) benign(0.03) TCGA-BH-A1EV-01 1 163044203 163044203 C A RGS4 Missense_Mutation p.F254L 0.08 deleterious(0.02) possibly_damaging(0.814) TCGA-BH-A1EV-01 1 197160832 197160832 G A ZBTB41 Missense_Mutation p.H440Y 0.08 deleterious(0) possibly_damaging(0.757) TCGA-BH-A1EV-01 1 210334230 210334230 C G SYT14 Missense_Mutation p.S568C 0.11 deleterious(0) probably_damaging(0.997) TCGA-BH-A1EV-01 1 21042027 21042027 T C KIF17 Missense_Mutation p.I113V 0.13 tolerated(0.28) benign(0.075) TCGA-BH-A1EV-01 1 223567997 223567997 A C C1orf65 Missense_Mutation p.S394R 0.22 tolerated(0.46) benign(0.006) TCGA-BH-A1EV-01 1 247150728 247150728 C G ZNF695 Missense_Mutation p.Q363H 0.16 tolerated(0.49) probably_damaging(0.956) TCGA-BH-A1EV-01 1 36752711 36752711 C G THRAP3 Missense_Mutation p.Q294E 0.09 tolerated(0.12) possibly_damaging(0.764) TCGA-BH-A1EV-01 1 44035447 44035447 C T PTPRF Missense_Mutation p.S189L 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A1EV-01 1 74492640 74492640 A G LRRIQ3 Missense_Mutation p.Y578H 0.38 tolerated(1) benign(0.002) TCGA-BH-A1EV-01 1 8716446 8716446 C G RERE 5'UTR 0.12 TCGA-BH-A1EV-01 20 3128515 3128515 G A FASTKD5 Missense_Mutation p.S401L 0.23 deleterious(0) probably_damaging(0.976) TCGA-BH-A1EV-01 20 46313220 46313220 C T SULF2 Silent p.R281R 0.07 TCGA-BH-A1EV-01 20 50400726 50400726 G A SALL4 3'UTR 0.26 TCGA-BH-A1EV-01 20 50701660 50701660 T C ZFP64 Silent p.K458K 0.21 TCGA-BH-A1EV-01 21 46687167 46687167 C T POFUT2 Intron 0.64 TCGA-BH-A1EV-01 2 101188161 101188161 G C PDCL3 Missense_Mutation p.D160H 0.18 deleterious(0) probably_damaging(0.997) TCGA-BH-A1EV-01 2 176995644 176995644 C G HOXD8 Missense_Mutation p.Q184E 0.29 tolerated(0.09) possibly_damaging(0.497) TCGA-BH-A1EV-01 2 186672616 186672616 C G FSIP2 Missense_Mutation p.P6284A 0.16 probably_damaging(0.917) TCGA-BH-A1EV-01 2 225729686 225729686 G A DOCK10 Missense_Mutation p.S459F 0.26 deleterious(0) benign(0.234) TCGA-BH-A1EV-01 2 228736358 228736358 G A DAW1 5'UTR 0.30 TCGA-BH-A1EV-01 2 242373613 242373613 G C FARP2 Missense_Mutation p.R303T 0.18 deleterious(0) probably_damaging(0.996) TCGA-BH-A1EV-01 2 27707103 27707103 G A IFT172 Silent p.F109F 0.17 TCGA-BH-A1EV-01 2 29135533 29135533 G A WDR43 Missense_Mutation p.R188Q 0.19 tolerated(0.07) possibly_damaging(0.786) TCGA-BH-A1EV-01 2 32289234 32289234 G C SPAST Missense_Mutation p.E112Q 0.19 tolerated(0.44) benign(0.302) TCGA-BH-A1EV-01 2 9633946 9633946 A G ADAM17 Silent p.C641C 0.17 TCGA-BH-A1EV-01 3 10146177 10146177 G C FANCD2OS Missense_Mutation p.I94M 0.41 deleterious(0) benign(0.093) TCGA-BH-A1EV-01 3 121202280 121202280 G A POLQ Missense_Mutation p.L1975F 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-BH-A1EV-01 3 13401854 13401854 G A NUP210 Silent p.I690I 0.05 TCGA-BH-A1EV-01 3 134920324 134920324 C T EPHB1 Silent p.D713D 0.16 TCGA-BH-A1EV-01 3 157160269 157160269 C T PTX3 Missense_Mutation p.T216I 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A1EV-01 3 197751548 197751548 C T LMLN Silent p.G552G 0.46 TCGA-BH-A1EV-01 3 25761536 25761536 T G NGLY1 Silent p.R586R 0.23 TCGA-BH-A1EV-01 3 35785363 35785363 C A ARPP21 Nonsense_Mutation p.Y647* 0.14 TCGA-BH-A1EV-01 3 54952782 54952782 C T LRTM1 Missense_Mutation p.G248S 0.23 tolerated(0.4) benign(0.011) TCGA-BH-A1EV-01 3 77607107 77607107 G C ROBO2 Missense_Mutation p.R431T 0.19 tolerated(0.05) benign(0.227) TCGA-BH-A1EV-01 3 99514307 99514307 C T COL8A1 Missense_Mutation p.P521L 0.21 deleterious(0.05) unknown(0) TCGA-BH-A1EV-01 4 110745768 110745768 G C GAR1 3'UTR 0.33 TCGA-BH-A1EV-01 4 185045320 185045320 G A ENPP6 Missense_Mutation p.S176F 0.31 tolerated(0.72) benign(0.016) TCGA-BH-A1EV-01 4 53492238 53492238 C T USP46 Missense_Mutation p.E170K 0.21 tolerated(0.29) benign(0.133) TCGA-BH-A1EV-01 4 86852190 86852190 G A ARHGAP24 Intron 0.27 TCGA-BH-A1EV-01 5 123976948 123976948 G C ZNF608 Missense_Mutation p.Q1483E 0.21 tolerated(0.1) probably_damaging(0.968) TCGA-BH-A1EV-01 5 131657966 131657966 C G SLC22A4 Missense_Mutation p.L248V 0.21 tolerated(0.07) benign(0.377) TCGA-BH-A1EV-01 5 140222591 140222591 C T PCDHA8 Missense_Mutation p.A562V 0.52 deleterious_low_confidence(0.04) benign(0.152) TCGA-BH-A1EV-01 5 160042949 160042949 C T ATP10B Missense_Mutation p.R850Q 0.25 tolerated(0.63) benign(0.007) TCGA-BH-A1EV-01 5 38944651 38944651 C T RICTOR Missense_Mutation p.D1604N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A1EV-01 5 54558525 54558525 G C DHX29 Missense_Mutation p.A1254G 0.05 deleterious(0) probably_damaging(0.953) TCGA-BH-A1EV-01 5 96129517 96129517 G C ERAP1 Missense_Mutation p.L355V 0.24 deleterious(0) probably_damaging(0.992) TCGA-BH-A1EV-01 6 116987976 116987976 C G ZUFSP Missense_Mutation p.R127T 0.02 tolerated(0.44) benign(0.001) TCGA-BH-A1EV-01 6 157527466 157527466 G C ARID1B Missense_Mutation p.E1731Q 0.31 possibly_damaging(0.675) TCGA-BH-A1EV-01 6 163483209 163483209 C G PACRG Missense_Mutation p.H107D 0.30 deleterious(0) probably_damaging(0.995) TCGA-BH-A1EV-01 6 28097614 28097614 G A ZSCAN16 Silent p.Q311Q 0.36 TCGA-BH-A1EV-01 6 30884991 30884991 C T VARS2 Missense_Mutation p.S318L 0.11 deleterious(0.01) possibly_damaging(0.584) TCGA-BH-A1EV-01 6 32190509 32190509 C A NOTCH4 Missense_Mutation p.G77V 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A1EV-01 6 51934282 51934282 C T PKHD1 Missense_Mutation p.D251N 0.17 deleterious(0) benign(0.159) TCGA-BH-A1EV-01 6 52993741 52993741 G A GCM1 Missense_Mutation p.L192F 0.18 deleterious(0.03) benign(0.027) TCGA-BH-A1EV-01 6 72011289 72011289 G A OGFRL1 Missense_Mutation p.R298Q 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-BH-A1EV-01 6 73935156 73935156 T A KHDC1L 5'UTR 0.14 TCGA-BH-A1EV-01 6 88221166 88221166 C G SLC35A1 Silent p.L312L 0.24 TCGA-BH-A1EV-01 7 137597730 137597730 G A CREB3L2 Intron 0.30 TCGA-BH-A1EV-01 7 141726934 141726934 G A MGAM Silent p.A334A 0.04 TCGA-BH-A1EV-01 7 21744181 21744181 G C DNAH11 Missense_Mutation p.E2142Q 0.17 probably_damaging(0.999) TCGA-BH-A1EV-01 7 44147257 44147257 C G AEBP1 Missense_Mutation p.L233V 0.17 deleterious_low_confidence(0) benign(0.401) TCGA-BH-A1EV-01 8 110418568 110418568 C T PKHD1L1 Silent p.F558F 0.19 TCGA-BH-A1EV-01 8 144943000 144943000 G C EPPK1 Silent p.L1474L 0.42 TCGA-BH-A1EV-01 8 23291938 23291938 G A ENTPD4 Missense_Mutation p.S505L 0.22 tolerated(0.12) possibly_damaging(0.732) TCGA-BH-A1EV-01 8 30695443 30695443 T C TEX15 Missense_Mutation p.N2403S 0.19 tolerated(0.24) possibly_damaging(0.766) TCGA-BH-A1EV-01 8 72184063 72184063 G A EYA1 Missense_Mutation p.S299L 0.13 tolerated(0.2) benign(0.108) TCGA-BH-A1EV-01 8 72184079 72184079 G C EYA1 Missense_Mutation p.R294G 0.14 tolerated(0.08) probably_damaging(0.939) TCGA-BH-A1EV-01 8 8869082 8869082 G C ERI1 Silent p.L106L 0.18 TCGA-BH-A1EV-01 9 138774817 138774817 G A CAMSAP1 Missense_Mutation p.R90C 0.22 deleterious(0) probably_damaging(0.994) TCGA-BH-A1EV-01 9 26996420 26996420 C T LRRC19 Missense_Mutation p.E225K 0.15 tolerated(0.08) benign(0.004) TCGA-BH-A1EV-01 9 27948861 27948861 C T LINGO2 Missense_Mutation p.M603I 0.19 deleterious(0) probably_damaging(0.968) TCGA-BH-A1EV-01 9 75773372 75773372 G A ANXA1 5'UTR 0.50 TCGA-BH-A1EV-01 9 97563249 97563249 C T C9orf3 Silent p.I443I 0.26 TCGA-BH-A1EV-01 X 100274321 100274321 C A TRMT2B Missense_Mutation p.D414Y 0.23 deleterious(0.04) possibly_damaging(0.615) TCGA-BH-A1EV-01 X 135405374 135405374 G A GPR112 Missense_Mutation p.E170K 0.25 deleterious(0.03) benign(0.06) TCGA-BH-A1EV-01 X 136112852 136112852 C T GPR101 Missense_Mutation p.E328K 0.21 tolerated_low_confidence(0.6) benign(0.004) TCGA-BH-A1EV-01 X 18767947 18767947 G A PPEF1 Missense_Mutation p.M91I 0.22 tolerated(0.43) benign(0) TCGA-BH-A1EV-01 X 19390837 19390837 G A MAP3K15 Silent p.I1014I 0.17 TCGA-BH-A1EV-01 X 37029349 37029349 C A FAM47C Missense_Mutation p.P956T 0.22 tolerated(0.09) possibly_damaging(0.599) TCGA-BH-A1EV-01 X 53966697 53966697 G A PHF8 Missense_Mutation p.R1004C 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-BH-A1EV-01 X 54099314 54099314 G A FAM120C 3'UTR 0.27 TCGA-BH-A1EV-01 X 75392893 75392893 A G PBDC1 5'UTR 0.21 TCGA-BH-A1EW-01 10 71849864 71849864 C A H2AFY2 Missense_Mutation p.A74D 0.26 deleterious(0.04) benign(0.227) TCGA-BH-A1EW-01 10 85965678 85965678 G A CDHR1 Missense_Mutation p.V320I 0.12 tolerated(0.31) benign(0.155) TCGA-BH-A1EW-01 11 5264421 5264421 A G HBG1 3'Flank 0.22 TCGA-BH-A1EW-01 12 14835986 14835986 C T GUCY2C Missense_Mutation p.D201N 0.13 tolerated(0.1) possibly_damaging(0.71) TCGA-BH-A1EW-01 12 76765227 76765227 C T OSBPL8 Splice_Site p.X685_splice 0.11 TCGA-BH-A1EW-01 14 94756804 94756804 G A SERPINA10 Nonsense_Mutation p.Q43* 0.14 TCGA-BH-A1EW-01 17 28960257 28960257 T A LRRC37BP1 RNA 0.13 TCGA-BH-A1EW-01 17 75471846 75471846 C T SEPT9 Intron 0.12 TCGA-BH-A1EW-01 17 80042925 80042925 G A FASN Silent p.G1465G 0.50 TCGA-BH-A1EW-01 19 2811608 2811608 C T THOP1 Missense_Mutation p.P595L 0.31 tolerated(0.09) possibly_damaging(0.639) TCGA-BH-A1EW-01 19 7598801 7598801 G T MCOLN1 3'UTR 0.19 TCGA-BH-A1EW-01 1 11718651 11718651 G A FBXO44 Missense_Mutation p.D152N 0.16 deleterious(0) possibly_damaging(0.498) TCGA-BH-A1EW-01 2 99410874 99410874 T C KIAA1211L 3'UTR 0.20 TCGA-BH-A1EW-01 4 187171480 187171480 C T KLKB1 Missense_Mutation p.R228W 0.09 deleterious(0) probably_damaging(0.96) TCGA-BH-A1EW-01 4 69817413 69817413 G A UGT2A3 Silent p.F22F 0.16 TCGA-BH-A1EW-01 5 79470865 79470865 G T SERINC5 Missense_Mutation p.R155S 0.16 deleterious(0.03) probably_damaging(0.981) TCGA-BH-A1EW-01 7 45124668 45124668 T C NACAD Missense_Mutation p.T371A 0.09 tolerated(0.05) benign(0.25) TCGA-BH-A1EW-01 9 117888 117888 C T FOXD4 Missense_Mutation p.D78N 0.04 tolerated(0.35) benign(0.006) TCGA-BH-A1EW-01 X 11777804 11777804 G A MSL3 Intron 0.14 TCGA-BH-A1EW-01 X 118377191 118377191 G A PGRMC1 Missense_Mutation p.D188N 0.11 tolerated(0.13) benign(0.012) TCGA-BH-A1EW-01 X 150911669 150911669 G A CNGA2 Missense_Mutation p.D232N 0.13 deleterious(0) probably_damaging(0.989) TCGA-BH-A1EX-01 11 5248212 5248212 C A HBB Missense_Mutation p.A14S 0.22 tolerated(1) benign(0.004) TCGA-BH-A1EX-01 11 57176738 57176738 C G SLC43A3 Silent p.G427G 0.30 TCGA-BH-A1EX-01 12 46242691 46242691 G A ARID2 Silent p.S551S 0.33 TCGA-BH-A1EX-01 12 88496844 88496844 C T CEP290 Intron 0.47 TCGA-BH-A1EX-01 13 108881865 108881865 A G ABHD13 Missense_Mutation p.N100S 0.19 tolerated(0.1) benign(0.012) TCGA-BH-A1EX-01 13 77786170 77786170 A G MYCBP2 Silent p.T1023T 0.24 TCGA-BH-A1EX-01 14 69346794 69346794 G A ACTN1 Missense_Mutation p.T722I 0.28 deleterious(0) probably_damaging(0.999) TCGA-BH-A1EX-01 14 94845836 94845836 C T SERPINA1 Missense_Mutation p.G344R 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A1EX-01 15 57731718 57731718 G A CGNL1 Silent p.Q507Q 0.29 TCGA-BH-A1EX-01 16 1718050 1718050 A T CRAMP1L Missense_Mutation p.S1064C 0.21 deleterious(0.03) benign(0.067) TCGA-BH-A1EX-01 16 4311920 4311920 G A TFAP4 Missense_Mutation p.R129W 0.22 deleterious(0) probably_damaging(0.996) TCGA-BH-A1EX-01 16 76587194 76587194 G T CNTNAP4 Missense_Mutation p.D1080Y 0.31 deleterious(0) probably_damaging(0.987) TCGA-BH-A1EX-01 16 84497522 84497522 C T ATP2C2 3'UTR 0.28 TCGA-BH-A1EX-01 17 16343015 16343015 G A TRPV2 3'Flank 0.25 TCGA-BH-A1EX-01 17 16725288 16725288 G A AC022596.6 RNA 0.11 TCGA-BH-A1EX-01 18 5395094 5395094 G A EPB41L3 Missense_Mutation p.T1042M 0.12 deleterious(0) probably_damaging(1) TCGA-BH-A1EX-01 19 58370315 58370315 G T ZNF587 Missense_Mutation p.V179F 0.18 tolerated(1) possibly_damaging(0.556) TCGA-BH-A1EX-01 19 6750590 6750590 G A TRIP10 Missense_Mutation p.E479K 0.31 deleterious(0.03) benign(0.388) TCGA-BH-A1EX-01 1 172357865 172357865 C G DNM3 Missense_Mutation p.P813R 0.23 tolerated_low_confidence(0.18) benign(0) TCGA-BH-A1EX-01 1 22148672 22148672 G T LDLRAD2 Intron 0.33 TCGA-BH-A1EX-01 22 26829801 26829801 T C ASPHD2 Missense_Mutation p.Y74H 0.30 tolerated(0.06) probably_damaging(0.997) TCGA-BH-A1EX-01 2 131810522 131810522 C T FAM168B Missense_Mutation p.R181Q 0.45 tolerated_low_confidence(0.06) possibly_damaging(0.544) TCGA-BH-A1EX-01 2 227860239 227860239 G A RHBDD1 3'UTR 0.09 TCGA-BH-A1EX-01 2 39995627 39995627 T C THUMPD2 Silent p.V229V 0.36 TCGA-BH-A1EX-01 3 119101176 119101176 G A ARHGAP31 Missense_Mutation p.A157T 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A1EX-01 3 184644419 184644419 G A VPS8 Missense_Mutation p.R871Q 0.31 tolerated(0.12) possibly_damaging(0.701) TCGA-BH-A1EX-01 4 111539459 111539459 G A PITX2 Missense_Mutation p.T266M 0.17 deleterious(0.03) probably_damaging(0.942) TCGA-BH-A1EX-01 5 112197037 112197037 T A SRP19 5'UTR 0.34 TCGA-BH-A1EX-01 5 158750314 158750314 A G IL12B Missense_Mutation p.Y38H 0.10 tolerated(1) benign(0) TCGA-BH-A1EX-01 5 56152545 56152545 T C MAP3K1 Missense_Mutation p.W201R 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BH-A1EX-01 5 78975402 78975402 C G PAPD4 Missense_Mutation p.D403E 0.39 tolerated(0.06) benign(0.174) TCGA-BH-A1EX-01 8 52321348 52321348 G A PXDNL Nonsense_Mutation p.R946* 0.38 TCGA-BH-A1EX-01 9 116359127 116359127 A G RGS3 Missense_Mutation p.Q1164R 0.29 deleterious(0) probably_damaging(1) TCGA-BH-A1EX-01 9 139639696 139639696 T A LCN6 Missense_Mutation p.N113I 0.21 deleterious(0) probably_damaging(0.984) TCGA-BH-A1EX-01 9 15784567 15784567 C T CCDC171 Missense_Mutation p.R1048W 0.32 tolerated(0.1) possibly_damaging(0.781) TCGA-BH-A1EY-01 10 102266117 102266117 C T SEC31B Silent p.K281K 0.15 TCGA-BH-A1EY-01 10 111860429 111860429 C T ADD3 Silent p.S6S 0.61 TCGA-BH-A1EY-01 10 61833656 61833656 C T ANK3 Missense_Mutation p.R2328H 0.30 probably_damaging(0.98) TCGA-BH-A1EY-01 10 70446140 70446140 C T TET1 Missense_Mutation p.R1694C 0.25 deleterious(0) benign(0.254) TCGA-BH-A1EY-01 12 14774139 14774139 G A GUCY2C Silent p.I871I 0.25 TCGA-BH-A1EY-01 12 14822720 14822720 A C GUCY2C Silent p.P406P 0.22 TCGA-BH-A1EY-01 12 26818867 26818867 C T ITPR2 Missense_Mutation p.M509I 0.25 tolerated(0.08) benign(0.396) TCGA-BH-A1EY-01 12 62749202 62749202 C G USP15 Silent p.G287G 0.24 TCGA-BH-A1EY-01 14 36003619 36003619 C A INSM2 Missense_Mutation p.P54H 0.29 tolerated(0.08) benign(0.003) TCGA-BH-A1EY-01 14 53417294 53417317 TCCTGCGAGCGCGGAGGAAATGGC - FERMT2 Splice_Site 0.51 TCGA-BH-A1EY-01 15 41099876 41099876 G T ZFYVE19 Missense_Mutation p.G30V 0.20 deleterious_low_confidence(0) benign(0.032) TCGA-BH-A1EY-01 15 55727242 55727242 G A DYX1C1 Missense_Mutation p.T303M 0.24 tolerated(0.11) benign(0.149) TCGA-BH-A1EY-01 17 12044463 12044463 G C MAP2K4 Splice_Site p.X363_splice 0.33 TCGA-BH-A1EY-01 17 16612273 16612273 G C CCDC144A Missense_Mutation p.R301T 0.31 tolerated_low_confidence(0.27) possibly_damaging(0.587) TCGA-BH-A1EY-01 17 7578553 7578553 T C TP53 Missense_Mutation p.Y126C 0.45 deleterious(0) probably_damaging(1) TCGA-BH-A1EY-01 17 7999968 7999968 T A ALOXE3 Missense_Mutation p.I837F 0.28 deleterious(0) probably_damaging(0.959) TCGA-BH-A1EY-01 19 47422652 47422652 C T ARHGAP35 Silent p.F240F 0.42 TCGA-BH-A1EY-01 19 50491661 50491661 G A VRK3 Silent p.P395P 0.20 TCGA-BH-A1EY-01 19 50496154 50496154 G C VRK3 Missense_Mutation p.A309G 0.09 deleterious(0.01) possibly_damaging(0.876) TCGA-BH-A1EY-01 19 54080627 54080627 C G ZNF331 Nonsense_Mutation p.Y271* 0.25 TCGA-BH-A1EY-01 19 55417683 55417683 G A NCR1 Missense_Mutation p.A21T 0.22 tolerated(1) benign(0.002) TCGA-BH-A1EY-01 19 8023948 8023948 A T ELAVL1 3'UTR 0.37 TCGA-BH-A1EY-01 1 12835007 12835007 C G PRAMEF12 5'UTR 0.18 TCGA-BH-A1EY-01 1 152329372 152329372 G A FLG2 Missense_Mutation p.S297F 0.24 unknown(0) TCGA-BH-A1EY-01 1 231406538 231406538 C T GNPAT Silent p.S438S 0.19 TCGA-BH-A1EY-01 1 36785498 36785498 A G SH3D21 Missense_Mutation p.K412E 0.35 tolerated(0.25) benign(0.005) TCGA-BH-A1EY-01 1 39918358 39918358 G A MACF1 Silent p.A4813A 0.22 TCGA-BH-A1EY-01 1 45821107 45821107 C T TESK2 Silent p.G136G 0.22 TCGA-BH-A1EY-01 1 62293124 62293124 C T INADL Missense_Mutation p.R617C 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A1EY-01 1 65307285 65307285 C G JAK1 Splice_Site p.X802_splice 0.18 TCGA-BH-A1EY-01 20 13846124 13846124 C A SEL1L2 Intron 0.22 TCGA-BH-A1EY-01 20 23017202 23017202 G T SSTR4 Missense_Mutation p.C361F 0.29 tolerated(0.4) probably_damaging(0.921) TCGA-BH-A1EY-01 20 40143457 40143457 G C CHD6 Missense_Mutation p.S230C 0.22 deleterious(0.01) probably_damaging(0.94) TCGA-BH-A1EY-01 20 60909320 60909320 G A LAMA5 Silent p.H887H 0.21 TCGA-BH-A1EY-01 21 41684276 41684276 G C DSCAM Missense_Mutation p.F598L 0.17 tolerated(1) benign(0.002) TCGA-BH-A1EY-01 21 46875461 46875461 G A COL18A1 Missense_Mutation p.C6Y 0.19 unknown(0) TCGA-BH-A1EY-01 22 39884229 39884229 C T MGAT3 Missense_Mutation p.R293C 0.40 deleterious(0) probably_damaging(1) TCGA-BH-A1EY-01 2 179527763 179527763 C T TTN Silent p.P12240P 0.18 TCGA-BH-A1EY-01 2 197744811 197744811 G A PGAP1 Missense_Mutation p.R447C 0.25 deleterious(0.04) benign(0.202) TCGA-BH-A1EY-01 2 228882873 228882873 G T SPHKAP Silent p.V899V 0.26 TCGA-BH-A1EY-01 2 61575105 61575105 A G USP34 Missense_Mutation p.F729L 0.27 tolerated_low_confidence(0.14) benign(0.001) TCGA-BH-A1EY-01 2 74477542 74477542 G A SLC4A5 Silent p.F527F 0.18 TCGA-BH-A1EY-01 2 88405936 88405936 G A SMYD1 Silent p.S358S 0.23 TCGA-BH-A1EY-01 3 130120614 130120614 T G COL6A5 Missense_Mutation p.I1381M 0.26 deleterious(0.02) benign(0.265) TCGA-BH-A1EY-01 3 138224214 138224231 CTTTATTAAAATTTTGGA - CEP70 In_Frame_Del p.V376_K381del 0.19 TCGA-BH-A1EY-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.27 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A1EY-01 4 119718868 119718868 G C SEC24D Missense_Mutation p.I337M 0.32 deleterious(0) possibly_damaging(0.903) TCGA-BH-A1EY-01 6 159692527 159692527 C T FNDC1 3'UTR 0.36 TCGA-BH-A1EY-01 6 36291085 36291085 T C C6orf222 Missense_Mutation p.T486A 0.11 tolerated(0.19) possibly_damaging(0.801) TCGA-BH-A1EY-01 7 107353011 107353011 A G SLC26A4 Missense_Mutation p.T755A 0.24 deleterious(0.02) benign(0) TCGA-BH-A1EY-01 7 123303086 123303086 G A LMOD2 Silent p.G482G 0.19 TCGA-BH-A1EY-01 7 151860481 151860481 C T KMT2C Missense_Mutation p.S3394N 0.29 possibly_damaging(0.597) TCGA-BH-A1EY-01 8 10623041 10623041 C T PINX1 Missense_Mutation p.G286D 0.37 tolerated(1) benign(0.001) TCGA-BH-A1EY-01 8 108973037 108973037 T A RSPO2 Missense_Mutation p.I98L 0.16 tolerated(0.08) benign(0.297) TCGA-BH-A1EY-01 8 56723652 56723652 G C TGS1 Missense_Mutation p.D786H 0.30 deleterious(0) probably_damaging(0.994) TCGA-BH-A1EY-01 9 37861271 37861271 C G DCAF10 Silent p.P482P 0.24 TCGA-BH-A1EY-01 X 30268685 30268685 C G MAGEB1 Silent p.L25L 0.20 TCGA-BH-A1F0-01 11 103908727 103908727 C A DDI1 Silent p.R393R 0.07 TCGA-BH-A1F0-01 11 105623713 105623713 C T GRIA4 Missense_Mutation p.S85F 0.04 deleterious(0) probably_damaging(0.995) TCGA-BH-A1F0-01 11 62300087 62300087 G A AHNAK Missense_Mutation p.P601L 0.08 benign(0.248) TCGA-BH-A1F0-01 11 64621841 64621841 C T EHD1 Silent p.P523P 0.17 TCGA-BH-A1F0-01 11 76372536 76372536 G A LRRC32 Missense_Mutation p.S34L 0.05 tolerated(0.83) benign(0.021) TCGA-BH-A1F0-01 11 8729329 8729329 A G ST5 Missense_Mutation p.S809P 0.10 deleterious(0) possibly_damaging(0.751) TCGA-BH-A1F0-01 12 10525566 10525566 G A KLRK1 3'UTR 0.05 TCGA-BH-A1F0-01 12 106461051 106461051 G C NUAK1 Missense_Mutation p.S505R 0.10 tolerated(0.28) benign(0.001) TCGA-BH-A1F0-01 12 27126807 27126807 C G TM7SF3 3'UTR 0.16 TCGA-BH-A1F0-01 12 4737322 4737322 C A AKAP3 Missense_Mutation p.R249L 0.04 deleterious(0.03) possibly_damaging(0.743) TCGA-BH-A1F0-01 13 48955528 48955528 A G RB1 Silent p.K548K 0.05 TCGA-BH-A1F0-01 13 92345944 92345944 G A GPC5 Missense_Mutation p.V277I 0.15 tolerated(0.09) benign(0.181) TCGA-BH-A1F0-01 13 96589200 96589200 T A UGGT2 Missense_Mutation p.Y652F 0.04 tolerated(1) benign(0) TCGA-BH-A1F0-01 14 23884244 23884244 A G MYH7 Missense_Mutation p.M1840T 0.05 tolerated(0.09) benign(0.038) TCGA-BH-A1F0-01 15 78882494 78882494 C A CHRNA5 Missense_Mutation p.T254N 0.04 deleterious(0) probably_damaging(0.996) TCGA-BH-A1F0-01 16 51173264 51173264 C A SALL1 Missense_Mutation p.A957S 0.06 tolerated(0.64) benign(0.018) TCGA-BH-A1F0-01 16 71209610 71209610 G A HYDIN Missense_Mutation p.S139L 0.05 probably_damaging(0.921) TCGA-BH-A1F0-01 16 81116436 81116436 G A GCSH 3'UTR 0.04 TCGA-BH-A1F0-01 17 36719078 36719078 G A SRCIN1 Silent p.T273T 0.07 TCGA-BH-A1F0-01 17 40475055 40475055 C G STAT3 Missense_Mutation p.V619L 0.04 deleterious(0) benign(0.039) TCGA-BH-A1F0-01 17 49731062 49731062 C A CA10 Silent p.T167T 0.09 TCGA-BH-A1F0-01 17 54925375 54925375 G C DGKE Silent p.G279G 0.05 TCGA-BH-A1F0-01 17 72443284 72443284 G A GPRC5C 3'UTR 0.32 TCGA-BH-A1F0-01 17 7578491 7578491 C - TP53 Frame_Shift_Del p.V147Lfs*23 0.35 TCGA-BH-A1F0-01 19 3739095 3739095 C T TJP3 Missense_Mutation p.R541W 0.12 deleterious(0) probably_damaging(0.924) TCGA-BH-A1F0-01 19 4217300 4217300 G A ANKRD24 Missense_Mutation p.A715T 0.12 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-BH-A1F0-01 19 46319770 46319770 G A SYMPK Silent p.A1108A 0.22 TCGA-BH-A1F0-01 19 48878893 48878893 A G SYNGR4 Missense_Mutation p.M119V 0.06 tolerated(1) benign(0) TCGA-BH-A1F0-01 19 55452888 55452888 T C NLRP7 Silent p.E64E 0.04 TCGA-BH-A1F0-01 19 56244792 56244792 C T NLRP9 Silent p.L135L 0.07 TCGA-BH-A1F0-01 19 56901795 56901795 C T ZNF582 Missense_Mutation p.D29N 0.04 tolerated(0.32) possibly_damaging(0.464) TCGA-BH-A1F0-01 1 112020768 112020768 G C C1orf162 3'UTR 0.09 TCGA-BH-A1F0-01 1 1158663 1158663 C G SDF4 Missense_Mutation p.A180P 0.07 tolerated(0.12) benign(0.262) TCGA-BH-A1F0-01 1 12416044 12416044 C G VPS13D Missense_Mutation p.D3256E 0.08 probably_damaging(0.984) TCGA-BH-A1F0-01 1 150601914 150601914 C T ENSA Silent p.A11A 0.04 TCGA-BH-A1F0-01 1 155264474 155264474 G C PKLR Missense_Mutation p.P255R 0.08 deleterious(0) probably_damaging(1) TCGA-BH-A1F0-01 1 158655120 158655120 C A SPTA1 Silent p.G14G 0.05 TCGA-BH-A1F0-01 1 158908947 158908947 C T PYHIN1 Silent p.C163C 0.05 TCGA-BH-A1F0-01 1 160128872 160128872 G A ATP1A4 Silent p.K202K 0.06 TCGA-BH-A1F0-01 1 160143412 160143412 C T ATP1A4 Silent p.A632A 0.04 TCGA-BH-A1F0-01 1 207755283 207755283 C T CR1 Missense_Mutation p.S1746F 0.03 deleterious(0) probably_damaging(0.989) TCGA-BH-A1F0-01 1 207796386 207796386 C A CR1 Missense_Mutation p.S2442Y 0.22 deleterious(0.01) benign(0.011) TCGA-BH-A1F0-01 1 230384985 230384985 G A GALNT2 Silent p.R291R 0.14 TCGA-BH-A1F0-01 1 47571812 47571812 C A CYP4Z1 Missense_Mutation p.S360R 0.09 deleterious(0) benign(0.058) TCGA-BH-A1F0-01 1 59150910 59150910 C T MYSM1 Missense_Mutation p.R138Q 0.08 deleterious(0.03) probably_damaging(0.939) TCGA-BH-A1F0-01 1 79357327 79357327 C T ELTD1 Nonsense_Mutation p.W631* 0.24 TCGA-BH-A1F0-01 1 94048116 94048116 C G BCAR3 Missense_Mutation p.L476F 0.11 deleterious(0.03) benign(0.372) TCGA-BH-A1F0-01 1 97770909 97770909 G C DPYD Silent p.T735T 0.05 TCGA-BH-A1F0-01 20 44576196 44576196 G A PCIF1 Silent p.T639T 0.05 TCGA-BH-A1F0-01 20 45771734 45771734 G A EYA2 Missense_Mutation p.E309K 0.09 deleterious(0) probably_damaging(0.998) TCGA-BH-A1F0-01 20 51870526 51870526 C A TSHZ2 Missense_Mutation p.L177M 0.19 deleterious(0) probably_damaging(0.999) TCGA-BH-A1F0-01 22 32112726 32112726 C T PRR14L Missense_Mutation p.G367S 0.11 tolerated(0.33) benign(0.025) TCGA-BH-A1F0-01 2 145156992 145156992 C G ZEB2 Missense_Mutation p.E588Q 0.07 tolerated(0.07) probably_damaging(0.998) TCGA-BH-A1F0-01 2 168100278 168100278 C A XIRP2 Silent p.V792V 0.04 TCGA-BH-A1F0-01 2 170806357 170806357 T G UBR3 Silent p.P1109P 0.03 TCGA-BH-A1F0-01 2 207170990 207170990 G T ZDBF2 Nonsense_Mutation p.E580* 0.17 TCGA-BH-A1F0-01 2 25967231 25967231 C T ASXL2 Missense_Mutation p.D659N 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A1F0-01 3 151166152 151166152 C A IGSF10 Missense_Mutation p.Q539H 0.03 tolerated(0.05) probably_damaging(0.994) TCGA-BH-A1F0-01 3 151166319 151166319 C T IGSF10 Missense_Mutation p.E484K 0.03 deleterious(0.01) probably_damaging(0.984) TCGA-BH-A1F0-01 3 151166374 151166374 C G IGSF10 Missense_Mutation p.M465I 0.03 tolerated(0.22) benign(0.002) TCGA-BH-A1F0-01 3 154147429 154147429 C T GPR149 5'UTR 0.10 TCGA-BH-A1F0-01 4 104067218 104067218 T A CENPE Missense_Mutation p.E1394V 0.10 possibly_damaging(0.536) TCGA-BH-A1F0-01 4 10492036 10492036 A G CLNK 3'UTR 0.08 TCGA-BH-A1F0-01 4 105412082 105412082 C G CXXC4 Missense_Mutation p.G293A 0.05 tolerated(0.32) benign(0.009) TCGA-BH-A1F0-01 4 123833734 123833734 C G NUDT6 Missense_Mutation p.D163H 0.06 deleterious(0) probably_damaging(0.925) TCGA-BH-A1F0-01 4 123838722 123838722 T G NUDT6 Missense_Mutation p.T126P 0.04 deleterious(0.02) benign(0.368) TCGA-BH-A1F0-01 4 123838723 123838723 C A NUDT6 Missense_Mutation p.L125F 0.04 deleterious(0) probably_damaging(0.994) TCGA-BH-A1F0-01 4 123838836 123838836 C G NUDT6 Missense_Mutation p.E88Q 0.06 tolerated(0.1) probably_damaging(0.986) TCGA-BH-A1F0-01 4 128843090 128843090 C T MFSD8 Missense_Mutation p.G343R 0.06 deleterious(0) probably_damaging(1) TCGA-BH-A1F0-01 4 175565106 175565106 A G GLRA3 Missense_Mutation p.V409A 0.04 tolerated(1) benign(0) TCGA-BH-A1F0-01 5 172535710 172535710 G C CREBRF Missense_Mutation p.E436Q 0.13 tolerated(0.33) probably_damaging(0.997) TCGA-BH-A1F0-01 5 39383265 39383265 G C DAB2 Missense_Mutation p.P266A 0.06 deleterious(0.05) possibly_damaging(0.728) TCGA-BH-A1F0-01 6 11104467 11104467 C T ERVFRD-1 Silent p.A359A 0.05 TCGA-BH-A1F0-01 6 133013400 133013400 C G VNN1 Missense_Mutation p.D384H 0.11 deleterious(0.01) probably_damaging(1) TCGA-BH-A1F0-01 6 133013439 133013439 C G VNN1 Missense_Mutation p.E371Q 0.08 tolerated(0.11) benign(0.362) TCGA-BH-A1F0-01 6 134492799 134492799 G C SGK1 Silent p.V381V 0.16 TCGA-BH-A1F0-01 6 134493422 134493422 G T SGK1 Nonsense_Mutation p.S327* 0.15 TCGA-BH-A1F0-01 6 26199295 26199295 C G HIST1H2AD Silent p.L59L 0.06 TCGA-BH-A1F0-01 6 31117972 31117972 C T CCHCR1 Silent p.L411L 0.09 TCGA-BH-A1F0-01 6 86201888 86201888 T C NT5E Silent p.H518H 0.12 TCGA-BH-A1F0-01 7 1131749 1131749 C A GPER1 Missense_Mutation p.L129M 0.09 tolerated(0.09) probably_damaging(0.993) TCGA-BH-A1F0-01 7 151921136 151921136 T A KMT2C Missense_Mutation p.E1096V 0.08 possibly_damaging(0.811) TCGA-BH-A1F0-01 7 20441487 20441487 A T ITGB8 Missense_Mutation p.R475S 0.13 tolerated(0.74) benign(0) TCGA-BH-A1F0-01 7 73249204 73249204 G A WBSCR27 Missense_Mutation p.R203C 0.06 deleterious(0) benign(0.428) TCGA-BH-A1F0-01 7 82544848 82544848 C G PCLO Missense_Mutation p.D4152H 0.09 unknown(0) TCGA-BH-A1F0-01 7 87148753 87148753 C G ABCB1 Missense_Mutation p.G939A 0.12 deleterious(0.03) probably_damaging(0.945) TCGA-BH-A1F0-01 7 99063789 99063789 C G ATP5J2 5'UTR 0.07 TCGA-BH-A1F0-01 8 139609178 139609178 A T COL22A1 Silent p.L1467L 0.09 TCGA-BH-A1F0-01 8 51664606 51664606 G A SNTG1 Missense_Mutation p.D444N 0.03 deleterious(0) possibly_damaging(0.821) TCGA-BH-A1F0-01 8 52721927 52721927 G C PXDNL 5'UTR 0.11 TCGA-BH-A1F0-01 8 95718175 95718175 C G ESRP1 3'UTR 0.09 TCGA-BH-A1F0-01 8 99224661 99224661 C G NIPAL2 Silent p.V209V 0.03 TCGA-BH-A1F0-01 9 108467984 108467984 A G TMEM38B Silent p.P73P 0.05 TCGA-BH-A1F0-01 9 137716529 137716529 C T COL5A1 Silent p.D1594D 0.14 TCGA-BH-A1F0-01 9 21837955 21837955 C T MTAP Silent p.A132A 0.08 TCGA-BH-A1F0-01 X 153416306 153416306 C T OPN1LW Silent p.V97V 0.10 TCGA-BH-A1F2-01 10 101557000 101557000 G A ABCC2 Missense_Mutation p.R260Q 0.23 tolerated(0.58) benign(0.016) TCGA-BH-A1F2-01 10 15256166 15256166 C A FAM171A1 Missense_Mutation p.R474I 0.15 tolerated(0.26) benign(0.292) TCGA-BH-A1F2-01 10 49450274 49450274 G A FRMPD2 Missense_Mutation p.S166F 0.12 deleterious(0.03) benign(0.282) TCGA-BH-A1F2-01 11 2909544 2909544 C T SLC22A18AS Missense_Mutation p.E210K 0.11 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-BH-A1F2-01 11 58170702 58170702 G C OR5B3 Missense_Mutation p.L61V 0.14 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-BH-A1F2-01 11 5878074 5878074 C G OR52E8 Missense_Mutation p.V287L 0.16 tolerated(0.14) benign(0.362) TCGA-BH-A1F2-01 11 67196636 67196636 G A RPS6KB2 Silent p.V55V 0.27 TCGA-BH-A1F2-01 11 74562157 74562157 C G XRRA1 Missense_Mutation p.L444F 0.37 tolerated(0.25) benign(0.167) TCGA-BH-A1F2-01 11 74562184 74562184 C G XRRA1 Missense_Mutation p.K435N 0.32 deleterious(0) possibly_damaging(0.77) TCGA-BH-A1F2-01 12 132426329 132426329 G A PUS1 Missense_Mutation p.R346H 0.20 deleterious(0) probably_damaging(0.978) TCGA-BH-A1F2-01 12 57957940 57957940 G A KIF5A Missense_Mutation p.R114Q 0.21 tolerated(0.9) benign(0.002) TCGA-BH-A1F2-01 13 19752468 19752468 T A TUBA3C Missense_Mutation p.D98V 0.14 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-BH-A1F2-01 13 95861807 95861807 C A ABCC4 Silent p.A222A 0.45 TCGA-BH-A1F2-01 14 103803551 103803551 C G EIF5 Silent p.L142L 0.28 TCGA-BH-A1F2-01 14 96777942 96777942 C A ATG2B Silent p.V1309V 0.17 TCGA-BH-A1F2-01 16 3641097 3641097 C T SLX4 Missense_Mutation p.E848K 0.31 deleterious(0) probably_damaging(0.998) TCGA-BH-A1F2-01 17 27621071 27621071 C G NUFIP2 Missense_Mutation p.E3Q 0.30 deleterious_low_confidence(0) unknown(0) TCGA-BH-A1F2-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.55 deleterious(0) probably_damaging(0.985) TCGA-BH-A1F2-01 17 80051484 80051486 GAA - FASN In_Frame_Del p.F148del 0.38 TCGA-BH-A1F2-01 17 9739689 9739689 C A GLP2R Silent p.G93G 0.44 TCGA-BH-A1F2-01 19 44590278 44590278 C T ZNF284 Missense_Mutation p.S216L 0.23 deleterious(0.01) benign(0.101) TCGA-BH-A1F2-01 19 57883271 57883271 C T ZNF547 Missense_Mutation p.S49L 0.18 deleterious(0) possibly_damaging(0.597) TCGA-BH-A1F2-01 1 12726620 12726620 C T AADACL4 Silent p.R366R 0.27 TCGA-BH-A1F2-01 1 158604413 158604413 C G SPTA1 Missense_Mutation p.E1829Q 0.17 deleterious(0) possibly_damaging(0.847) TCGA-BH-A1F2-01 1 160604599 160604599 C A SLAMF1 Missense_Mutation p.K168N 0.07 deleterious(0.01) possibly_damaging(0.758) TCGA-BH-A1F2-01 1 170985437 170985437 G T MROH9 Missense_Mutation p.G623V 0.17 deleterious(0.03) benign(0.164) TCGA-BH-A1F2-01 1 183090900 183090900 C T LAMC1 Missense_Mutation p.P678L 0.29 tolerated(0.05) benign(0.009) TCGA-BH-A1F2-01 1 193038629 193038629 C T TROVE2 Missense_Mutation p.R149W 0.11 deleterious(0) probably_damaging(1) TCGA-BH-A1F2-01 1 196696041 196696041 G C CFH Missense_Mutation p.G736A 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A1F2-01 1 196973945 196973945 A G CFHR5 Silent p.K495K 0.39 TCGA-BH-A1F2-01 1 208391105 208391105 C T PLXNA2 Missense_Mutation p.V55I 0.11 tolerated(0.14) probably_damaging(0.914) TCGA-BH-A1F2-01 1 212860284 212860284 C T BATF3 Missense_Mutation p.R78Q 0.22 deleterious(0) possibly_damaging(0.835) TCGA-BH-A1F2-01 1 246890254 246890254 C T SCCPDH Missense_Mutation p.S84L 0.12 deleterious(0) probably_damaging(0.995) TCGA-BH-A1F2-01 1 32672880 32672880 G A IQCC Missense_Mutation p.G280S 0.13 tolerated(0.5) benign(0.028) TCGA-BH-A1F2-01 1 4829954 4829954 A C AJAP1 Missense_Mutation p.I291L 0.04 deleterious(0.03) benign(0) TCGA-BH-A1F2-01 20 44572381 44572381 T G PCIF1 Missense_Mutation p.S328A 0.09 tolerated(0.15) benign(0.272) TCGA-BH-A1F2-01 20 44572399 44572399 T C PCIF1 Missense_Mutation p.Y334H 0.14 tolerated(0.17) probably_damaging(0.999) TCGA-BH-A1F2-01 20 9510417 9510417 A T LAMP5 Missense_Mutation p.N265Y 0.17 deleterious(0.01) possibly_damaging(0.691) TCGA-BH-A1F2-01 21 30909645 30909646 - T GRIK1 Frame_Shift_Ins p.I919Nfs*8 0.18 TCGA-BH-A1F2-01 21 33043991 33043991 C T SCAF4 Silent p.G1055G 0.05 TCGA-BH-A1F2-01 21 42080507 42080507 G A DSCAM Silent p.N78N 0.19 TCGA-BH-A1F2-01 2 100194863 100194863 C T AFF3 Silent p.P973P 0.30 TCGA-BH-A1F2-01 2 148676044 148676044 A T ACVR2A Missense_Mutation p.N282I 0.28 deleterious(0) probably_damaging(0.985) TCGA-BH-A1F2-01 2 172822404 172822410 GATGAAA - HAT1 Frame_Shift_Del p.E197Gfs*5 0.13 TCGA-BH-A1F2-01 2 179497253 179497253 C T TTN Missense_Mutation p.G14494R 0.18 TCGA-BH-A1F2-01 2 196762433 196762433 T C DNAH7 Silent p.V1535V 0.39 TCGA-BH-A1F2-01 2 204030948 204030948 G T NBEAL1 Missense_Mutation p.V1902L 0.12 deleterious(0.01) benign(0.034) TCGA-BH-A1F2-01 2 233527459 233527459 G A EFHD1 Intron 0.19 TCGA-BH-A1F2-01 2 234869451 234869451 C T TRPM8 Missense_Mutation p.A465V 0.10 deleterious(0) probably_damaging(0.997) TCGA-BH-A1F2-01 2 23980928 23980928 T A ATAD2B Missense_Mutation p.K1146N 0.17 tolerated(0.47) benign(0.255) TCGA-BH-A1F2-01 3 10146113 10146113 C T FANCD2OS Missense_Mutation p.G116R 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A1F2-01 3 114070640 114070640 G A ZBTB20 Silent p.N95N 0.20 TCGA-BH-A1F2-01 3 137886067 137886067 A C DBR1 Silent p.L190L 0.32 TCGA-BH-A1F2-01 4 184129264 184129264 C T WWC2 Nonsense_Mutation p.R134* 0.38 TCGA-BH-A1F2-01 5 140554886 140554886 C T PCDHB7 3'UTR 0.43 TCGA-BH-A1F2-01 5 15928218 15928218 G A FBXL7 Missense_Mutation p.R116Q 0.47 tolerated(0.47) benign(0.159) TCGA-BH-A1F2-01 5 178548660 178548660 A G ADAMTS2 Splice_Site p.X1060_splice 0.24 TCGA-BH-A1F2-01 7 45767787 45767787 G A SEPT7P2 RNA 0.17 TCGA-BH-A1F2-01 7 48080992 48080992 C T C7orf57 Silent p.S39S 0.18 TCGA-BH-A1F2-01 8 100832306 100832306 C T VPS13B Silent p.L3009L 0.13 TCGA-BH-A1F2-01 8 143560728 143560728 G A BAI1 Missense_Mutation p.V536I 0.40 tolerated(0.15) benign(0.312) TCGA-BH-A1F2-01 8 28384922 28384922 G A FZD3 Silent p.S215S 0.34 TCGA-BH-A1F2-01 8 4852036 4852036 C T CSMD1 5'Flank 0.47 TCGA-BH-A1F2-01 8 87878778 87878778 A G CNBD1 Missense_Mutation p.N19D 0.19 deleterious(0.01) benign(0.041) TCGA-BH-A1F2-01 9 131361450 131361450 G A SPTAN1 Intron 0.29 TCGA-BH-A1F2-01 9 139730289 139730289 C G RABL6 Missense_Mutation p.N268K 0.14 deleterious(0) possibly_damaging(0.524) TCGA-BH-A1F2-01 9 39177396 39177396 C T CNTNAP3 Silent p.T282T 0.18 TCGA-BH-A1F2-01 9 78789962 78789962 C G PCSK5 Missense_Mutation p.T606S 0.32 tolerated(0.18) benign(0.173) TCGA-BH-A1F2-01 X 107435784 107435784 C A COL4A6 Missense_Mutation p.G368C 0.24 unknown(0) TCGA-BH-A1F2-01 X 152686448 152686448 G A ZFP92 Missense_Mutation p.E205K 0.15 deleterious(0) probably_damaging(0.961) TCGA-BH-A1F2-01 X 24552253 24552253 G T PDK3 Intron 0.28 TCGA-BH-A1F2-01 X 51640687 51640687 G T MAGED1 Nonsense_Mutation p.E567* 0.21 TCGA-BH-A1F2-01 X 53456655 53456655 C T RIBC1 Intron 0.23 TCGA-BH-A1F2-01 X 68836476 68836476 G A EDA Silent p.Q108Q 0.20 TCGA-BH-A1F5-01 10 118957011 118957011 G A KCNK18 Silent p.S4S 0.21 TCGA-BH-A1F5-01 10 5789352 5789352 T C FAM208B Missense_Mutation p.I1323T 0.06 tolerated(0.09) benign(0.025) TCGA-BH-A1F5-01 11 57100986 57100986 T C SSRP1 Missense_Mutation p.K90R 0.05 tolerated(0.09) benign(0.444) TCGA-BH-A1F5-01 11 60668993 60668993 A C PRPF19 Missense_Mutation p.V182G 0.28 tolerated(0.13) benign(0.104) TCGA-BH-A1F5-01 11 92714945 92714945 C T MTNR1B Missense_Mutation p.R186C 0.06 deleterious(0.02) benign(0.373) TCGA-BH-A1F5-01 12 124081212 124081212 T A TMED2 Missense_Mutation p.V181D 0.40 deleterious(0) possibly_damaging(0.907) TCGA-BH-A1F5-01 12 53204577 53204577 C A KRT4 Missense_Mutation p.R234L 0.03 deleterious(0) probably_damaging(0.999) TCGA-BH-A1F5-01 12 54971012 54971012 T A PDE1B Missense_Mutation p.I504N 0.18 tolerated(0.48) benign(0.396) TCGA-BH-A1F5-01 12 88496844 88496844 C T CEP290 Intron 0.67 TCGA-BH-A1F5-01 14 24538005 24538005 C G LRRC16B Missense_Mutation p.P1271R 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-BH-A1F5-01 16 28506765 28506765 C T APOBR Missense_Mutation p.H135Y 0.68 tolerated(0.12) benign(0.245) TCGA-BH-A1F5-01 16 58589747 58589747 T A CNOT1 Missense_Mutation p.N849Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-BH-A1F5-01 17 16004701 16004701 C T NCOR1 Silent p.E851E 0.04 TCGA-BH-A1F5-01 17 7187613 7187613 C T SLC2A4 Silent p.L214L 0.32 TCGA-BH-A1F5-01 18 18983893 18983893 C T GREB1L Missense_Mutation p.S257L 0.13 deleterious(0.03) benign(0.006) TCGA-BH-A1F5-01 19 52272072 52272072 G A FPR2 Missense_Mutation p.R54Q 0.06 tolerated(0.11) possibly_damaging(0.477) TCGA-BH-A1F5-01 19 57327932 57327932 C T PEG3 Missense_Mutation p.M626I 0.37 tolerated(1) benign(0.002) TCGA-BH-A1F5-01 1 12942944 12942944 A T PRAMEF4 Missense_Mutation p.L91H 0.38 deleterious(0) probably_damaging(0.973) TCGA-BH-A1F5-01 1 153635506 153635506 G T ILF2 Missense_Mutation p.L304I 0.37 deleterious(0.02) benign(0.378) TCGA-BH-A1F5-01 1 77984336 77984336 G A AK5 Missense_Mutation p.R412H 0.23 deleterious(0.02) benign(0.043) TCGA-BH-A1F5-01 20 61467665 61467665 A T COL9A3 Missense_Mutation p.T510S 0.48 tolerated(0.21) probably_damaging(0.996) TCGA-BH-A1F5-01 20 62366833 62366833 G T ZGPAT Silent p.R458R 0.38 TCGA-BH-A1F5-01 20 826097 826097 G T FAM110A Missense_Mutation p.R217I 0.17 deleterious(0) possibly_damaging(0.604) TCGA-BH-A1F5-01 21 37504808 37504808 G A CBR3 5'Flank 0.12 TCGA-BH-A1F5-01 22 32188070 32188070 T A DEPDC5 Missense_Mutation p.Y226N 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A1F5-01 2 141806577 141806577 C T LRP1B Silent p.E589E 0.39 TCGA-BH-A1F5-01 2 192922416 192922416 G A TMEFF2 Silent p.A175A 0.07 TCGA-BH-A1F5-01 2 198283590 198283590 G A SF3B1 Intron 0.18 TCGA-BH-A1F5-01 2 203776258 203776258 G A WDR12 5'UTR 0.21 TCGA-BH-A1F5-01 4 1107207 1107207 T G RNF212 Silent p.R16R 0.46 TCGA-BH-A1F5-01 5 140957889 140957889 C A DIAPH1 Nonsense_Mutation p.E356* 0.06 TCGA-BH-A1F5-01 5 180377494 180377494 G A BTNL8 Missense_Mutation p.E485K 0.39 tolerated(0.33) benign(0.001) TCGA-BH-A1F5-01 5 56160644 56160644 C - MAP3K1 Frame_Shift_Del p.R307Vfs*5 0.39 TCGA-BH-A1F5-01 5 56178169 56178169 C T MAP3K1 Nonsense_Mutation p.Q1048* 0.39 TCGA-BH-A1F5-01 5 80381624 80381624 C T RASGRF2 Missense_Mutation p.P389S 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-BH-A1F5-01 6 31631634 31631634 T A GPANK1 Missense_Mutation p.N208Y 0.24 deleterious(0.05) possibly_damaging(0.908) TCGA-BH-A1F5-01 6 31735443 31735443 C T VWA7 Missense_Mutation p.R531Q 0.08 tolerated(0.22) benign(0.027) TCGA-BH-A1F5-01 7 11500336 11500336 T C THSD7A Missense_Mutation p.D853G 0.06 tolerated(0.83) benign(0) TCGA-BH-A1F5-01 7 149418622 149418622 C T KRBA1 Silent p.P154P 0.24 TCGA-BH-A1F5-01 8 133984055 133984055 C T TG Nonsense_Mutation p.R1998* 0.21 TCGA-BH-A1F5-01 8 142190852 142190852 T A DENND3 Missense_Mutation p.M868K 0.07 deleterious(0.03) benign(0.258) TCGA-BH-A1F5-01 9 109771899 109771899 G A ZNF462 Silent p.R2421R 0.49 TCGA-BH-A1F5-01 9 125154645 125154645 C T PTGS1 Missense_Mutation p.P541L 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A1F5-01 X 153032741 153032741 C T PLXNB3 Silent p.Y176Y 0.34 TCGA-BH-A1F5-01 X 47430836 47430836 G A ARAF Missense_Mutation p.A601T 0.36 tolerated_low_confidence(1) benign(0.005) TCGA-BH-A1F6-01 10 33212629 33212629 A G ITGB1 Missense_Mutation p.F276L 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-BH-A1F6-01 10 78317079 78317079 G A C10orf11 3'UTR 0.25 TCGA-BH-A1F6-01 10 90708572 90708572 C T ACTA2 Missense_Mutation p.R39H 0.38 tolerated_low_confidence(0.06) benign(0.073) TCGA-BH-A1F6-01 11 6458782 6458800 GCGGCCCAGCCATCTCAGG - HPX Frame_Shift_Del p.L192Tfs*64 0.25 TCGA-BH-A1F6-01 11 6913561 6913561 T G OR2D2 Silent p.T57T 0.13 TCGA-BH-A1F6-01 11 76834848 76834848 C G CAPN5 Missense_Mutation p.Q619E 0.11 tolerated(0.97) benign(0.001) TCGA-BH-A1F6-01 12 123800123 123800123 G - SBNO1 Frame_Shift_Del p.S1007Lfs*26 0.36 TCGA-BH-A1F6-01 12 6554700 6554700 A G CD27 Missense_Mutation p.S83G 0.36 deleterious(0.01) possibly_damaging(0.874) TCGA-BH-A1F6-01 13 101264696 101264696 T A TMTC4 Missense_Mutation p.M674L 0.29 tolerated(0.49) benign(0.006) TCGA-BH-A1F6-01 13 84453897 84453897 G A SLITRK1 Silent p.Y582Y 0.17 TCGA-BH-A1F6-01 14 21964799 21964799 T A TOX4 3'UTR 0.61 TCGA-BH-A1F6-01 14 23314529 23314529 A G MMP14 Silent p.E457E 0.41 TCGA-BH-A1F6-01 14 50281529 50281529 T C NEMF Missense_Mutation p.I542V 0.29 deleterious(0.03) benign(0.213) TCGA-BH-A1F6-01 14 91937280 91937280 C T SMEK1 Missense_Mutation p.E508K 0.32 tolerated(0.09) probably_damaging(0.953) TCGA-BH-A1F6-01 15 34105734 34105734 G C RYR3 Missense_Mutation p.A3486P 0.28 probably_damaging(0.961) TCGA-BH-A1F6-01 15 34140623 34140623 G A RYR3 Splice_Site p.X4543_splice 0.20 TCGA-BH-A1F6-01 15 55653040 55653040 T C CCPG1 Missense_Mutation p.R311G 0.24 deleterious(0) probably_damaging(0.944) TCGA-BH-A1F6-01 15 69018341 69018341 G C CORO2B 3'UTR 0.26 TCGA-BH-A1F6-01 16 22262009 22262009 G A EEF2K Missense_Mutation p.R148Q 0.20 deleterious(0) probably_damaging(0.964) TCGA-BH-A1F6-01 16 68087509 68087509 T A DUS2 Missense_Mutation p.V72D 0.38 deleterious(0) probably_damaging(0.972) TCGA-BH-A1F6-01 16 69725862 69725862 G T NFAT5 Missense_Mutation p.A712S 0.37 benign(0.053) TCGA-BH-A1F6-01 16 89924855 89924859 GCCCC - SPIRE2 Frame_Shift_Del p.P405Rfs*10 0.42 TCGA-BH-A1F6-01 17 10443330 10443330 C T MYH2 Silent p.K354K 0.42 TCGA-BH-A1F6-01 17 41150676 41150682 CCCAAGA - RPL27 5'UTR 0.71 TCGA-BH-A1F6-01 17 41365219 41365219 T G TMEM106A Missense_Mutation p.D53E 0.37 tolerated(0.43) benign(0.034) TCGA-BH-A1F6-01 17 53491548 53491548 A T MMD Silent p.T24T 0.20 TCGA-BH-A1F6-01 17 7578551 7578551 A G TP53 Missense_Mutation p.S127P 0.50 deleterious(0) probably_damaging(1) TCGA-BH-A1F6-01 17 7942523 7942523 G A ALOX15B Missense_Mutation p.G17D 0.35 deleterious(0) probably_damaging(0.997) TCGA-BH-A1F6-01 19 15224594 15224594 C T SYDE1 Silent p.D676D 0.41 TCGA-BH-A1F6-01 19 16976441 16976442 - C SIN3B Frame_Shift_Ins p.V569Rfs*29 0.30 TCGA-BH-A1F6-01 19 22155521 22155521 G A ZNF208 Missense_Mutation p.T772I 0.24 deleterious(0.02) benign(0.001) TCGA-BH-A1F6-01 19 40901699 40901699 G A PRX Silent p.L854L 0.20 TCGA-BH-A1F6-01 19 40902909 40902909 G C PRX Silent p.V450V 0.25 TCGA-BH-A1F6-01 19 40903119 40903119 G C PRX Silent p.V380V 0.30 TCGA-BH-A1F6-01 19 6007781 6007781 G A RFX2 Silent p.F389F 0.20 TCGA-BH-A1F6-01 1 10318553 10318553 C G KIF1B Silent p.P62P 0.22 TCGA-BH-A1F6-01 1 110919758 110919758 A C SLC16A4 Missense_Mutation p.I352M 0.27 deleterious(0) possibly_damaging(0.707) TCGA-BH-A1F6-01 1 21042009 21042009 C T KIF17 Missense_Mutation p.E119K 0.15 deleterious(0.02) possibly_damaging(0.681) TCGA-BH-A1F6-01 1 22161428 22161428 C T HSPG2 Silent p.S3488S 0.14 TCGA-BH-A1F6-01 1 3697704 3697704 G C LRRC47 Missense_Mutation p.P567R 0.26 deleterious(0) probably_damaging(1) TCGA-BH-A1F6-01 22 26877768 26877768 C G HPS4 5'UTR 0.39 TCGA-BH-A1F6-01 2 186678613 186678613 C T FSIP2 Silent p.A6812A 0.23 TCGA-BH-A1F6-01 2 242065791 242065791 C G PASK Missense_Mutation p.V847L 0.52 tolerated(0.67) benign(0.004) TCGA-BH-A1F6-01 3 183209883 183209883 C A KLHL6 Silent p.R566R 0.43 TCGA-BH-A1F6-01 3 52557974 52557974 G A STAB1 Missense_Mutation p.G2495R 0.19 deleterious(0) possibly_damaging(0.872) TCGA-BH-A1F6-01 4 128637566 128637566 A C INTU Missense_Mutation p.K935T 0.35 deleterious(0) possibly_damaging(0.877) TCGA-BH-A1F6-01 5 140802474 140802474 G A PCDHGA11 Silent p.A560A 0.52 TCGA-BH-A1F6-01 5 149755799 149755799 C T TCOF1 Missense_Mutation p.A683V 0.38 tolerated(0.1) probably_damaging(0.925) TCGA-BH-A1F6-01 6 32025869 32025869 C T TNXB Silent p.R2597R 0.27 TCGA-BH-A1F6-01 6 33374639 33374639 G A KIFC1 Missense_Mutation p.R655H 0.11 deleterious(0) probably_damaging(1) TCGA-BH-A1F6-01 7 150920819 150920819 G A ABCF2 Missense_Mutation p.R223C 0.25 tolerated(0.16) benign(0.008) TCGA-BH-A1F6-01 7 98257809 98257809 T C NPTX2 Silent p.I388I 0.19 TCGA-BH-A1F6-01 8 104709403 104709403 C T RIMS2 Missense_Mutation p.A89V 0.07 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-BH-A1F6-01 8 19677944 19677944 C G INTS10 Missense_Mutation p.T119R 0.17 deleterious(0) possibly_damaging(0.769) TCGA-BH-A1F6-01 8 38282147 38282147 G A FGFR1 Silent p.N303N 0.33 TCGA-BH-A1F6-01 8 62460693 62460693 C T ASPH Silent p.V567V 0.30 TCGA-BH-A1F6-01 8 86572356 86572356 C G REXO1L1P 3'UTR 0.18 TCGA-BH-A1F6-01 9 125377241 125377241 C T OR1Q1 Silent p.S75S 0.32 TCGA-BH-A1F8-01 10 121337005 121337005 A C TIAL1 Missense_Mutation p.M249R 0.57 tolerated(0.05) benign(0.014) TCGA-BH-A1F8-01 10 26505708 26505708 C T GAD2 5'UTR 0.33 TCGA-BH-A1F8-01 10 33103330 33103330 G A C10ORF68 Missense_Mutation p.G315R 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A1F8-01 10 50341879 50341879 C T FAM170B Missense_Mutation p.E29K 0.09 tolerated(0.05) benign(0.054) TCGA-BH-A1F8-01 10 70482304 70482304 C T CCAR1 Nonsense_Mutation p.Q15* 0.57 TCGA-BH-A1F8-01 10 70507212 70507212 C T CCAR1 Nonsense_Mutation p.Q239* 0.08 TCGA-BH-A1F8-01 10 89653845 89653845 A T PTEN Missense_Mutation p.N48I 0.62 deleterious(0) probably_damaging(0.995) TCGA-BH-A1F8-01 10 95088638 95088638 C G MYOF Silent p.L1671L 0.08 TCGA-BH-A1F8-01 11 120929104 120929104 G C TBCEL Missense_Mutation p.E255Q 0.32 tolerated(0.31) benign(0.116) TCGA-BH-A1F8-01 11 1254384 1254384 C T MUC5B Missense_Mutation p.A736V 0.33 unknown(0) TCGA-BH-A1F8-01 11 1466828 1466828 C T BRSK2 Silent p.F381F 0.26 TCGA-BH-A1F8-01 11 17470166 17470166 C T ABCC8 Missense_Mutation p.G410E 0.35 deleterious(0.05) probably_damaging(0.931) TCGA-BH-A1F8-01 11 193718 193718 C T SCGB1C1 Missense_Mutation p.A21V 0.21 deleterious(0.04) benign(0.335) TCGA-BH-A1F8-01 11 22284495 22284495 G A ANO5 Missense_Mutation p.D602N 0.04 deleterious(0.02) probably_damaging(0.938) TCGA-BH-A1F8-01 11 30032528 30032528 G T KCNA4 Missense_Mutation p.F566L 0.19 deleterious(0) possibly_damaging(0.857) TCGA-BH-A1F8-01 11 499131 499131 G C RNH1 Silent p.L166L 0.35 TCGA-BH-A1F8-01 11 5462646 5462646 G A OR51I1 Silent p.F33F 0.31 TCGA-BH-A1F8-01 11 65064841 65064841 G A POLA2 3'UTR 0.60 TCGA-BH-A1F8-01 11 73882561 73882561 G C PPME1 Missense_Mutation p.R32P 0.62 deleterious(0.04) benign(0.439) TCGA-BH-A1F8-01 11 76893573 76893573 G A MYO7A Missense_Mutation p.M1071I 0.10 deleterious(0.05) probably_damaging(0.974) TCGA-BH-A1F8-01 11 96117227 96117227 C T CCDC82 Missense_Mutation p.E229K 0.58 deleterious(0.04) probably_damaging(0.995) TCGA-BH-A1F8-01 12 104140458 104140458 G T STAB2 Nonsense_Mutation p.E2074* 0.36 TCGA-BH-A1F8-01 12 119942952 119942952 C T CCDC60 Missense_Mutation p.R243W 0.44 deleterious(0) probably_damaging(1) TCGA-BH-A1F8-01 12 120031720 120031720 G A TMEM233 Missense_Mutation p.E23K 0.30 tolerated(0.28) benign(0.446) TCGA-BH-A1F8-01 12 123333101 123333101 C G HIP1R Silent p.L82L 0.12 TCGA-BH-A1F8-01 12 13526234 13526234 C T C12orf36 Silent p.L107L 0.40 TCGA-BH-A1F8-01 12 313734 313734 G A SLC6A12 Silent p.F115F 0.32 TCGA-BH-A1F8-01 12 32793219 32793219 G A FGD4 Missense_Mutation p.A685T 0.46 deleterious(0.02) probably_damaging(0.938) TCGA-BH-A1F8-01 12 3757680 3757680 C G EFCAB4B Intron 0.33 TCGA-BH-A1F8-01 12 41463881 41463881 C T CNTN1 3'UTR 0.27 TCGA-BH-A1F8-01 12 50754707 50754707 C T FAM186A Missense_Mutation p.D139N 0.16 tolerated(0.13) benign(0.03) TCGA-BH-A1F8-01 12 56489535 56489535 G T ERBB3 Missense_Mutation p.R667L 0.31 deleterious(0) probably_damaging(1) TCGA-BH-A1F8-01 12 68051050 68051050 G A DYRK2 Silent p.V121V 0.21 TCGA-BH-A1F8-01 12 70133580 70133580 G A RAB3IP 5'UTR 0.38 TCGA-BH-A1F8-01 12 83359365 83359365 C G TMTC2 Missense_Mutation p.L571V 0.12 tolerated(0.06) probably_damaging(0.919) TCGA-BH-A1F8-01 13 27333626 27333626 C T GPR12 Silent p.K113K 0.62 TCGA-BH-A1F8-01 13 29238643 29238643 C T POMP Intron 0.39 TCGA-BH-A1F8-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.22 TCGA-BH-A1F8-01 13 73351596 73351596 C T DIS3 Missense_Mutation p.E206K 0.14 tolerated(0.33) benign(0.071) TCGA-BH-A1F8-01 13 77764439 77764439 A T MYCBP2 Missense_Mutation p.S1330T 0.05 probably_damaging(0.962) TCGA-BH-A1F8-01 13 99555295 99555295 G A DOCK9 Silent p.V369V 0.09 TCGA-BH-A1F8-01 14 50069163 50069163 C T LRR1 Missense_Mutation p.P87S 0.62 tolerated(0.1) benign(0.066) TCGA-BH-A1F8-01 14 61115628 61115628 C A SIX1 Nonsense_Mutation p.E94* 0.61 TCGA-BH-A1F8-01 14 72054479 72054479 C T SIPA1L1 5'UTR 0.56 TCGA-BH-A1F8-01 14 76425397 76425397 C G TGFB3 3'UTR 0.70 TCGA-BH-A1F8-01 14 95669924 95669924 C T CLMN Missense_Mutation p.E588K 0.45 tolerated_low_confidence(0.1) benign(0.059) TCGA-BH-A1F8-01 15 42652049 42652049 G A CAPN3 Missense_Mutation p.E16K 0.35 tolerated(0.17) benign(0.119) TCGA-BH-A1F8-01 15 52529738 52529738 C T MYO5C Missense_Mutation p.A937T 0.39 tolerated(0.72) benign(0.005) TCGA-BH-A1F8-01 15 54586231 54586231 G C UNC13C Missense_Mutation p.L1319F 0.35 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BH-A1F8-01 15 70347638 70347638 C G TLE3 Splice_Site p.X446_splice 0.27 TCGA-BH-A1F8-01 15 77471370 77471370 G C PEAK1 Missense_Mutation p.P967A 0.04 deleterious(0) probably_damaging(0.998) TCGA-BH-A1F8-01 15 79090319 79090319 G C ADAMTS7 Missense_Mutation p.S198C 0.31 deleterious(0.04) possibly_damaging(0.592) TCGA-BH-A1F8-01 15 79179664 79179664 C G MORF4L1 Missense_Mutation p.S138C 0.31 deleterious(0.01) possibly_damaging(0.469) TCGA-BH-A1F8-01 16 19553267 19553267 C T CCP110 Missense_Mutation p.S703F 0.06 tolerated(0.07) probably_damaging(0.991) TCGA-BH-A1F8-01 16 2025535 2025535 C G TBL3 Missense_Mutation p.L271V 0.12 tolerated(0.11) possibly_damaging(0.742) TCGA-BH-A1F8-01 16 26147270 26147270 G A HS3ST4 Missense_Mutation p.E358K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A1F8-01 16 28498999 28498999 G A CLN3 Missense_Mutation p.H120Y 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-BH-A1F8-01 16 31724658 31724658 C G ZNF720 5'UTR 0.32 TCGA-BH-A1F8-01 16 50326656 50326656 G C ADCY7 Missense_Mutation p.D203H 0.35 tolerated(0.12) possibly_damaging(0.867) TCGA-BH-A1F8-01 16 58018668 58018668 C T TEPP Silent p.F193F 0.33 TCGA-BH-A1F8-01 16 61891059 61891059 C T CDH8 Missense_Mutation p.E211K 0.08 deleterious(0.02) benign(0.232) TCGA-BH-A1F8-01 16 66836859 66836859 G A NAE1 3'UTR 0.47 TCGA-BH-A1F8-01 16 71098725 71098725 G C HYDIN Silent p.L698L 0.54 TCGA-BH-A1F8-01 16 72159902 72159902 C T PMFBP1 Missense_Mutation p.A740T 0.35 tolerated(1) benign(0.007) TCGA-BH-A1F8-01 16 88497563 88497563 G A ZNF469 Missense_Mutation p.E1201K 0.67 benign(0.337) TCGA-BH-A1F8-01 17 26697169 26697169 G T VTN Missense_Mutation p.A19D 0.38 deleterious(0.03) unknown(0) TCGA-BH-A1F8-01 17 34044241 34044241 A G AP2B1 Missense_Mutation p.N885S 0.38 tolerated(0.84) benign(0.01) TCGA-BH-A1F8-01 17 40556818 40556818 C G PTRF Missense_Mutation p.E354Q 0.40 tolerated(0.07) benign(0.102) TCGA-BH-A1F8-01 17 4060161 4060161 G T CYB5D2 Nonsense_Mutation p.G194* 0.24 TCGA-BH-A1F8-01 17 40997999 40997999 A T AOC2 Silent p.S452S 0.34 TCGA-BH-A1F8-01 17 41053005 41053005 G A G6PC Missense_Mutation p.D38N 0.42 deleterious(0) probably_damaging(1) TCGA-BH-A1F8-01 17 48595899 48595899 C T MYCBPAP Intron 0.13 TCGA-BH-A1F8-01 17 76133392 76133392 G A TMC8 Missense_Mutation p.D402N 0.12 tolerated(0.95) benign(0) TCGA-BH-A1F8-01 17 8638833 8638833 C A CCDC42 Nonsense_Mutation p.E197* 0.43 TCGA-BH-A1F8-01 17 9408460 9408460 C G STX8 Missense_Mutation p.E115Q 0.51 deleterious(0.01) benign(0.015) TCGA-BH-A1F8-01 18 77895655 77895655 G A ADNP2 Missense_Mutation p.E787K 0.37 deleterious(0.01) possibly_damaging(0.574) TCGA-BH-A1F8-01 19 10691955 10691955 G A AP1M2 Silent p.F220F 0.21 TCGA-BH-A1F8-01 19 3456562 3456562 G A NFIC Missense_Mutation p.D480N 0.09 deleterious(0.01) benign(0.054) TCGA-BH-A1F8-01 19 36003351 36003351 G A DMKN Missense_Mutation p.S219L 0.35 deleterious(0) possibly_damaging(0.647) TCGA-BH-A1F8-01 19 37382578 37382578 C T ZNF829 Missense_Mutation p.R453K 0.34 tolerated(0.09) probably_damaging(0.973) TCGA-BH-A1F8-01 19 38314456 38314456 G C CTD-2554C21.2 RNA 0.15 TCGA-BH-A1F8-01 19 38314546 38314546 G A CTD-2554C21.2 Intron 0.11 TCGA-BH-A1F8-01 19 3980544 3980544 C T EEF2 Silent p.K438K 0.14 TCGA-BH-A1F8-01 19 43348588 43348588 C G PSG10P RNA 0.40 TCGA-BH-A1F8-01 19 4442293 4442293 G A CHAF1A Missense_Mutation p.E909K 0.10 deleterious(0.01) possibly_damaging(0.905) TCGA-BH-A1F8-01 19 48551500 48551500 G A PLA2G4C 3'UTR 0.40 TCGA-BH-A1F8-01 19 54659091 54659091 G T CNOT3 Missense_Mutation p.K736N 0.22 deleterious(0) possibly_damaging(0.728) TCGA-BH-A1F8-01 19 56243480 56243480 C T NLRP9 Missense_Mutation p.G573S 0.29 tolerated(0.85) benign(0.156) TCGA-BH-A1F8-01 19 57326689 57326690 - A PEG3 Frame_Shift_Ins p.A1041Cfs*14 0.25 TCGA-BH-A1F8-01 19 9059785 9059785 C T MUC16 Missense_Mutation p.E9221K 0.53 unknown(0) TCGA-BH-A1F8-01 1 108742651 108742651 C G SLC25A24 Missense_Mutation p.G37A 0.27 deleterious(0) probably_damaging(0.972) TCGA-BH-A1F8-01 1 150769197 150769197 A C CTSK 3'UTR 0.35 TCGA-BH-A1F8-01 1 150931666 150931667 - A SETDB1 Frame_Shift_Ins p.N782Kfs*7 0.31 TCGA-BH-A1F8-01 1 152279012 152279012 C G FLG Missense_Mutation p.D2784H 0.21 possibly_damaging(0.799) TCGA-BH-A1F8-01 1 154303324 154303324 C G ATP8B2 Missense_Mutation p.L75V 0.30 tolerated(0.19) benign(0.003) TCGA-BH-A1F8-01 1 154961309 154961309 C G FLAD1 Nonsense_Mutation p.Y367* 0.47 TCGA-BH-A1F8-01 1 156915948 156915948 C T ARHGEF11 Missense_Mutation p.E901K 0.21 deleterious(0) probably_damaging(0.998) TCGA-BH-A1F8-01 1 186316511 186316511 C T TPR Silent p.K952K 0.12 TCGA-BH-A1F8-01 1 201980130 201980130 G A ELF3 5'UTR 0.42 TCGA-BH-A1F8-01 1 205739909 205739909 C T RAB7L1 Nonsense_Mutation p.W151* 0.32 TCGA-BH-A1F8-01 1 228538601 228538601 C T OBSCN Nonsense_Mutation p.Q7083* 0.38 TCGA-BH-A1F8-01 1 235338703 235338703 C G ARID4B Missense_Mutation p.D1154H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A1F8-01 1 24657969 24657969 C G GRHL3 Missense_Mutation p.S24C 0.54 deleterious(0.03) possibly_damaging(0.635) TCGA-BH-A1F8-01 1 94668277 94668277 C G ARHGAP29 Missense_Mutation p.E322D 0.59 tolerated(0.24) probably_damaging(0.99) TCGA-BH-A1F8-01 20 1164533 1164533 G C TMEM74B 5'UTR 0.16 TCGA-BH-A1F8-01 20 16496280 16496280 C T KIF16B Silent p.V87V 0.34 TCGA-BH-A1F8-01 20 20599987 20599987 C G RALGAPA2 Missense_Mutation p.M491I 0.05 tolerated(1) benign(0.001) TCGA-BH-A1F8-01 20 25657397 25657397 C A ZNF337 Missense_Mutation p.R176I 0.05 tolerated(0.46) benign(0.308) TCGA-BH-A1F8-01 20 34116299 34116299 G T C20orf173 Nonsense_Mutation p.S188* 0.26 TCGA-BH-A1F8-01 20 44999096 44999096 G A ELMO2 Silent p.L624L 0.14 TCGA-BH-A1F8-01 21 30464781 30464781 A G MAP3K7CL Silent p.A83A 0.12 TCGA-BH-A1F8-01 21 33044075 33044075 G A SCAF4 Silent p.N1027N 0.32 TCGA-BH-A1F8-01 22 32257357 32257357 G A DEPDC5 Missense_Mutation p.G1081R 0.17 tolerated_low_confidence(0.16) benign(0.023) TCGA-BH-A1F8-01 22 39636860 39636860 G T PDGFB Intron 0.50 TCGA-BH-A1F8-01 2 118864687 118864687 C G INSIG2 Silent p.L186L 0.35 TCGA-BH-A1F8-01 2 152544005 152544005 C G NEB Missense_Mutation p.M855I 0.32 possibly_damaging(0.577) TCGA-BH-A1F8-01 2 170863687 170863687 C T UBR3 Missense_Mutation p.P1406L 0.37 tolerated(0.78) benign(0.001) TCGA-BH-A1F8-01 2 179426695 179426695 C T TTN Missense_Mutation p.R28055K 0.30 TCGA-BH-A1F8-01 2 179604271 179604271 G A TTN Silent p.D4563D 0.33 TCGA-BH-A1F8-01 2 182794293 182794293 C A SSFA2 3'UTR 0.35 TCGA-BH-A1F8-01 2 190593522 190593522 C T ANKAR Silent p.I1056I 0.34 TCGA-BH-A1F8-01 2 200173524 200173524 G A SATB2 Missense_Mutation p.R567C 0.40 deleterious(0) possibly_damaging(0.854) TCGA-BH-A1F8-01 2 207041252 207041252 G A GPR1 Silent p.I240I 0.06 TCGA-BH-A1F8-01 2 209207371 209207371 C T PIKFYVE Silent p.L1675L 0.06 TCGA-BH-A1F8-01 2 219508614 219508614 G A ZNF142 Silent p.F875F 0.21 TCGA-BH-A1F8-01 2 232079614 232079614 C T ARMC9 Missense_Mutation p.S83L 0.33 deleterious(0.03) benign(0.066) TCGA-BH-A1F8-01 2 233399028 233399028 G A CHRND Missense_Mutation p.M449I 0.38 tolerated(0.18) benign(0.012) TCGA-BH-A1F8-01 2 234858761 234858761 G C TRPM8 Missense_Mutation p.E371Q 0.12 tolerated(0.07) probably_damaging(0.996) TCGA-BH-A1F8-01 2 237308074 237308074 C T IQCA1 Missense_Mutation p.G398R 0.30 deleterious(0) benign(0.284) TCGA-BH-A1F8-01 2 242204000 242204000 C G HDLBP Missense_Mutation p.E33Q 0.11 tolerated(0.06) benign(0.013) TCGA-BH-A1F8-01 2 28268610 28268610 C G BRE Missense_Mutation p.R172G 0.08 deleterious(0.02) benign(0.002) TCGA-BH-A1F8-01 2 73471840 73471840 C T CCT7 Silent p.L205L 0.38 TCGA-BH-A1F8-01 2 96781346 96781346 G C ADRA2B Missense_Mutation p.F181L 0.22 deleterious(0) probably_damaging(0.984) TCGA-BH-A1F8-01 3 118621295 118621295 C T IGSF11 3'UTR 0.40 TCGA-BH-A1F8-01 3 129251468 129251468 C G RHO Missense_Mutation p.I263M 0.41 deleterious(0.05) possibly_damaging(0.704) TCGA-BH-A1F8-01 3 159605599 159605599 G A IQCJ-SCHIP1 Missense_Mutation p.E443K 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-BH-A1F8-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.37 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A1F8-01 3 43618203 43618203 G A ANO10 Silent p.A381A 0.08 TCGA-BH-A1F8-01 3 44763099 44763099 G A ZNF502 Missense_Mutation p.E264K 0.11 deleterious(0) possibly_damaging(0.554) TCGA-BH-A1F8-01 3 71026112 71026112 G C FOXP1 Missense_Mutation p.R506G 0.57 deleterious(0.02) probably_damaging(0.974) TCGA-BH-A1F8-01 3 71096213 71096213 G A FOXP1 Nonsense_Mutation p.Q184* 0.07 TCGA-BH-A1F8-01 4 146067547 146067547 G A OTUD4 Missense_Mutation p.H367Y 0.63 tolerated(0.28) possibly_damaging(0.628) TCGA-BH-A1F8-01 4 16504411 16504411 G A LDB2 Missense_Mutation p.T326M 0.64 tolerated(0.07) probably_damaging(0.915) TCGA-BH-A1F8-01 4 170057685 170057685 G A SH3RF1 Silent p.A284A 0.59 TCGA-BH-A1F8-01 4 187541561 187541561 G A FAT1 Missense_Mutation p.S2060F 0.52 benign(0.014) TCGA-BH-A1F8-01 4 48139295 48139295 T G TEC 3'UTR 0.55 TCGA-BH-A1F8-01 4 71347020 71347020 G A MUC7 Missense_Mutation p.E187K 0.49 tolerated(0.2) unknown(0) TCGA-BH-A1F8-01 4 85678260 85678260 C T WDFY3 Missense_Mutation p.R1748Q 0.18 tolerated(0.68) benign(0.005) TCGA-BH-A1F8-01 5 133695701 133695701 C T CDKL3 Missense_Mutation p.D83N 0.23 deleterious(0) probably_damaging(0.999) TCGA-BH-A1F8-01 5 142780154 142780154 A C NR3C1 Missense_Mutation p.L84R 0.38 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-BH-A1F8-01 5 1466861 1466861 C T LPCAT1 Intron 0.50 TCGA-BH-A1F8-01 5 159776691 159776691 G A C1QTNF2 Silent p.N159N 0.63 TCGA-BH-A1F8-01 5 179020635 179020635 C T RUFY1 Missense_Mutation p.H468Y 0.38 deleterious(0.04) benign(0.435) TCGA-BH-A1F8-01 5 21975470 21975470 C T CDH12 Missense_Mutation p.E86K 0.36 deleterious(0.02) benign(0.179) TCGA-BH-A1F8-01 5 35857117 35857117 C G IL7R Missense_Mutation p.S13C 0.20 tolerated(0.24) benign(0.002) TCGA-BH-A1F8-01 5 35955644 35955644 C T UGT3A1 Intron 0.20 TCGA-BH-A1F8-01 5 42801110 42801110 G C SEPP1 Silent p.L286L 0.23 TCGA-BH-A1F8-01 5 60822199 60822199 G C ZSWIM6 Missense_Mutation p.E605Q 0.25 deleterious(0.02) benign(0.328) TCGA-BH-A1F8-01 5 80382663 80382663 C T RASGRF2 Silent p.H427H 0.37 TCGA-BH-A1F8-01 5 82937277 82937277 C A HAPLN1 3'UTR 0.32 TCGA-BH-A1F8-01 6 11232821 11232821 C T NEDD9 5'UTR 0.37 TCGA-BH-A1F8-01 6 129835646 129835646 C T LAMA2 Silent p.L3039L 0.36 TCGA-BH-A1F8-01 6 143094076 143094076 C T HIVEP2 Silent p.S600S 0.38 TCGA-BH-A1F8-01 6 152332804 152332804 G C ESR1 Missense_Mutation p.L370F 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A1F8-01 6 154439914 154439914 G A OPRM1 3'Flank 0.39 TCGA-BH-A1F8-01 6 26032006 26032006 C A HIST1H3B Nonsense_Mutation p.E95* 0.19 TCGA-BH-A1F8-01 6 26032138 26032138 C G HIST1H3B Missense_Mutation p.E51Q 0.21 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BH-A1F8-01 6 26033440 26033440 C T HIST1H2AB Silent p.K119K 0.10 TCGA-BH-A1F8-01 6 27833311 27833327 CTGCCGAGATCCTGGAG - HIST1H2AL Frame_Shift_Del p.A61Gfs*69 0.16 TCGA-BH-A1F8-01 6 32065667 32065667 C T TNXB Silent p.L103L 0.18 TCGA-BH-A1F8-01 6 39507966 39507966 C G KIF6 Missense_Mutation p.K486N 0.24 deleterious(0) possibly_damaging(0.889) TCGA-BH-A1F8-01 6 44222443 44222443 T C SLC35B2 Nonstop_Mutation p.*433Wext*8 0.33 TCGA-BH-A1F8-01 6 7182261 7182261 G T RREB1 Silent p.G39G 0.24 TCGA-BH-A1F8-01 6 88372852 88372852 A G ORC3 Missense_Mutation p.Y609C 0.43 tolerated(0.18) benign(0.018) TCGA-BH-A1F8-01 7 44118410 44118410 C A POLM Nonsense_Mutation p.E215* 0.66 TCGA-BH-A1F8-01 7 66410096 66410096 C T TMEM248 Missense_Mutation p.T98I 0.31 deleterious(0.01) possibly_damaging(0.854) TCGA-BH-A1F8-01 7 94053669 94053669 C T COL1A2 Missense_Mutation p.P863S 0.31 unknown(0) TCGA-BH-A1F8-01 8 110487470 110487470 C T PKHD1L1 Missense_Mutation p.S2910L 0.29 deleterious(0) probably_damaging(0.948) TCGA-BH-A1F8-01 8 123965814 123965814 G A ZHX2 Silent p.V688V 0.45 TCGA-BH-A1F8-01 8 56698896 56698896 G A TGS1 Missense_Mutation p.E147K 0.27 tolerated(0.12) possibly_damaging(0.51) TCGA-BH-A1F8-01 8 74893437 74893437 C T TMEM70 Silent p.L122L 0.04 TCGA-BH-A1F8-01 8 82741749 82741749 T G SNX16 Silent p.V126V 0.07 TCGA-BH-A1F8-01 9 129851266 129851266 G C ANGPTL2 Silent p.L478L 0.13 TCGA-BH-A1F8-01 9 139357443 139357443 C T SEC16A Missense_Mutation p.E1597K 0.33 deleterious(0.03) probably_damaging(0.946) TCGA-BH-A1F8-01 9 32632676 32632676 C G TAF1L Missense_Mutation p.E968Q 0.10 tolerated(1) benign(0.173) TCGA-BH-A1F8-01 9 5920984 5920984 G A KIAA2026 Missense_Mutation p.S1671F 0.57 tolerated(0.53) benign(0.282) TCGA-BH-A1F8-01 9 79465476 79465476 C T PRUNE2 Missense_Mutation p.E83K 0.27 deleterious(0) possibly_damaging(0.856) TCGA-BH-A1F8-01 9 8465571 8465571 G T PTPRD Missense_Mutation p.F1203L 0.55 deleterious(0.02) probably_damaging(0.968) TCGA-BH-A1F8-01 9 86584311 86584311 A G HNRNPK 3'UTR 0.58 TCGA-BH-A1F8-01 9 97209196 97209197 - T HIATL1 Frame_Shift_Ins p.L277Sfs*13 0.55 TCGA-BH-A1F8-01 X 105450345 105450345 C T MUM1L1 Missense_Mutation p.A307V 0.50 tolerated(0.21) benign(0.004) TCGA-BH-A1F8-01 X 16778500 16778500 G C SYAP1 3'UTR 0.06 TCGA-BH-A1F8-01 X 24024511 24024511 G A KLHL15 Silent p.T100T 0.48 TCGA-BH-A1F8-01 X 46943843 46943843 C T RGN Missense_Mutation p.R64C 0.05 tolerated(0.09) possibly_damaging(0.578) TCGA-BH-A1F8-01 X 49113997 49113997 C T FOXP3 Missense_Mutation p.R114Q 0.45 tolerated_low_confidence(0.3) benign(0.012) TCGA-BH-A1F8-01 X 9900268 9900268 C T SHROOM2 Missense_Mutation p.P982L 0.38 tolerated(0.77) benign(0) TCGA-BH-A1FC-01 10 114912185 114912185 G A TCF7L2 Missense_Mutation p.A419T 0.42 deleterious(0) probably_damaging(0.998) TCGA-BH-A1FC-01 10 118306869 118306869 C T PNLIP Missense_Mutation p.T37M 0.31 tolerated(0.17) benign(0.091) TCGA-BH-A1FC-01 10 127519171 127519171 A C BCCIP Missense_Mutation p.E121A 0.15 tolerated(0.12) benign(0.236) TCGA-BH-A1FC-01 10 18289724 18289724 A G SLC39A12 Missense_Mutation p.I577V 0.60 tolerated(0.12) probably_damaging(0.999) TCGA-BH-A1FC-01 10 75456920 75456920 A C AGAP5 Silent p.A75A 0.41 TCGA-BH-A1FC-01 11 102584089 102584089 C G MMP8 Missense_Mutation p.R465T 0.41 deleterious(0) probably_damaging(0.994) TCGA-BH-A1FC-01 11 108577472 108577472 A G DDX10 Silent p.K410K 0.24 TCGA-BH-A1FC-01 11 124412897 124412897 G T OR8B12 Silent p.A218A 0.19 TCGA-BH-A1FC-01 11 5444283 5444283 G T OR51Q1 Missense_Mutation p.A285S 0.19 deleterious(0.03) benign(0.137) TCGA-BH-A1FC-01 11 56020700 56020700 G A OR5T3 3'Flank 0.20 TCGA-BH-A1FC-01 11 64627773 64627773 C T EHD1 Missense_Mutation p.E180K 0.47 deleterious(0) possibly_damaging(0.877) TCGA-BH-A1FC-01 11 89938730 89938730 C T CHORDC1 Missense_Mutation p.M189I 0.15 deleterious(0.01) possibly_damaging(0.733) TCGA-BH-A1FC-01 12 119909871 119909871 G C CCDC60 Missense_Mutation p.K81N 0.12 deleterious(0.05) probably_damaging(0.928) TCGA-BH-A1FC-01 12 123825549 123825549 A C SBNO1 Missense_Mutation p.F213V 0.13 tolerated(0.08) benign(0.005) TCGA-BH-A1FC-01 12 2775935 2775935 G A CACNA1C Missense_Mutation p.R1585H 0.23 deleterious(0) probably_damaging(0.978) TCGA-BH-A1FC-01 12 301666 301666 T A SLC6A12 Missense_Mutation p.K560M 0.28 tolerated(0.26) possibly_damaging(0.894) TCGA-BH-A1FC-01 12 50047562 50047562 C G FMNL3 Missense_Mutation p.E389D 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-BH-A1FC-01 12 5154220 5154220 G A KCNA5 Missense_Mutation p.V303I 0.22 tolerated(0.43) benign(0.002) TCGA-BH-A1FC-01 12 52790015 52790015 C T KRT82 Missense_Mutation p.R357H 0.22 tolerated(0.27) probably_damaging(0.934) TCGA-BH-A1FC-01 12 69135678 69135678 C T NUP107 Missense_Mutation p.T863M 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-BH-A1FC-01 12 99074109 99074109 G A APAF1 Missense_Mutation p.E659K 0.17 deleterious(0.05) benign(0.346) TCGA-BH-A1FC-01 13 50299608 50299608 G A KPNA3 Missense_Mutation p.A138V 0.31 deleterious(0.03) probably_damaging(0.939) TCGA-BH-A1FC-01 14 24683764 24683764 A C MDP1 Missense_Mutation p.F84C 0.52 deleterious(0) probably_damaging(0.998) TCGA-BH-A1FC-01 14 94718122 94718122 G A PPP4R4 Missense_Mutation p.R585Q 0.15 tolerated(0.2) possibly_damaging(0.906) TCGA-BH-A1FC-01 14 97003383 97003383 C A PAPOLA Missense_Mutation p.F367L 0.19 deleterious(0.01) probably_damaging(0.97) TCGA-BH-A1FC-01 15 101813007 101813007 C T VIMP Missense_Mutation p.R180H 0.30 deleterious(0) unknown(0) TCGA-BH-A1FC-01 15 65490934 65490934 C T CILP Missense_Mutation p.V564M 0.26 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FC-01 15 79586661 79586661 G T ANKRD34C Missense_Mutation p.R345S 0.55 tolerated(0.09) probably_damaging(0.923) TCGA-BH-A1FC-01 16 11769936 11769936 C A SNN Missense_Mutation p.S7R 0.24 deleterious_low_confidence(0) benign(0.063) TCGA-BH-A1FC-01 16 19628021 19628021 C T C16orf62 Missense_Mutation p.T461M 0.40 tolerated(0.18) benign(0.006) TCGA-BH-A1FC-01 16 2012156 2012156 C G RPS2 Missense_Mutation p.K275N 0.43 deleterious(0) benign(0.096) TCGA-BH-A1FC-01 16 30596492 30596492 G T ZNF785 Silent p.P95P 0.24 TCGA-BH-A1FC-01 16 53337698 53337698 G - CHD9 Frame_Shift_Del p.R1927Pfs*5 0.19 TCGA-BH-A1FC-01 17 11659921 11659921 A G DNAH9 Missense_Mutation p.N2259D 0.11 benign(0.315) TCGA-BH-A1FC-01 17 15943783 15943783 G C NCOR1 Missense_Mutation p.I2235M 0.11 probably_damaging(0.996) TCGA-BH-A1FC-01 17 26897924 26897924 C A PIGS Missense_Mutation p.D78Y 0.21 tolerated(0.08) possibly_damaging(0.55) TCGA-BH-A1FC-01 17 53471851 53471851 A T MMD Silent p.I187I 0.39 TCGA-BH-A1FC-01 17 55334455 55334455 C T MSI2 Intron 0.27 TCGA-BH-A1FC-01 17 57763136 57763136 T - CLTC Frame_Shift_Del p.F1599Sfs*5 0.14 TCGA-BH-A1FC-01 17 62496729 62496729 A C DDX5 Missense_Mutation p.L460R 0.32 deleterious(0) probably_damaging(0.994) TCGA-BH-A1FC-01 17 62856814 62856814 G C LRRC37A3 Missense_Mutation p.S1150R 0.16 deleterious(0.01) probably_damaging(0.969) TCGA-BH-A1FC-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.49 TCGA-BH-A1FC-01 17 7797876 7797876 G C CHD3 Missense_Mutation p.D466H 0.20 possibly_damaging(0.876) TCGA-BH-A1FC-01 17 80008632 80008632 C T RFNG Missense_Mutation p.V109I 0.23 tolerated(0.17) benign(0.029) TCGA-BH-A1FC-01 19 17320474 17320474 G A MYO9B Missense_Mutation p.E1902K 0.62 deleterious(0) probably_damaging(0.998) TCGA-BH-A1FC-01 19 2934636 2934636 C T ZNF77 Silent p.P163P 0.20 TCGA-BH-A1FC-01 19 49143044 49143044 C T CA11 Splice_Site p.X189_splice 0.26 TCGA-BH-A1FC-01 19 51215349 51215349 G T SHANK1 Missense_Mutation p.S272Y 0.41 probably_damaging(0.996) TCGA-BH-A1FC-01 19 55512174 55512174 G T NLRP2 Nonsense_Mutation p.E1033* 0.28 TCGA-BH-A1FC-01 1 109466693 109466693 C A GPSM2 Missense_Mutation p.R558S 0.13 deleterious(0) probably_damaging(1) TCGA-BH-A1FC-01 1 110584264 110584264 G T STRIP1 Missense_Mutation p.G253C 0.17 deleterious(0.02) probably_damaging(0.986) TCGA-BH-A1FC-01 1 142804456 142804456 A T RP11-423O2.5 RNA 0.16 TCGA-BH-A1FC-01 1 146696784 146696784 C A FMO5 Intron 0.12 TCGA-BH-A1FC-01 1 149398963 149398963 G A HIST2H3PS2 3'Flank 0.10 TCGA-BH-A1FC-01 1 149398964 149398964 C A HIST2H3PS2 3'Flank 0.10 TCGA-BH-A1FC-01 1 150255739 150255739 C G C1orf51 Missense_Mutation p.T21S 0.07 tolerated_low_confidence(0.05) unknown(0) TCGA-BH-A1FC-01 1 151315882 151315882 T C RFX5 Missense_Mutation p.K265R 0.50 tolerated(0.13) possibly_damaging(0.608) TCGA-BH-A1FC-01 1 152059455 152059455 C T TCHHL1 Missense_Mutation p.G235R 0.43 tolerated(0.2) benign(0.025) TCGA-BH-A1FC-01 1 175052966 175052966 G A TNN Missense_Mutation p.E377K 0.38 tolerated(0.17) benign(0.068) TCGA-BH-A1FC-01 1 215259881 215259881 C G KCNK2 Missense_Mutation p.L73V 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-BH-A1FC-01 1 215814011 215814011 C T USH2A Missense_Mutation p.D4953N 0.36 benign(0.001) TCGA-BH-A1FC-01 1 21582470 21582470 G C ECE1 Missense_Mutation p.I330M 0.31 tolerated(0.26) possibly_damaging(0.704) TCGA-BH-A1FC-01 1 21582517 21582517 C T ECE1 Missense_Mutation p.A315T 0.31 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FC-01 1 224804731 224804731 C A CNIH3 5'UTR 0.61 TCGA-BH-A1FC-01 1 227174270 227174270 C A ADCK3 Silent p.P592P 0.15 TCGA-BH-A1FC-01 1 240966272 240966272 T C RGS7 Missense_Mutation p.K431E 0.07 deleterious(0.01) benign(0.019) TCGA-BH-A1FC-01 1 240966273 240966273 C A RGS7 Missense_Mutation p.M430I 0.06 deleterious(0) probably_damaging(0.951) TCGA-BH-A1FC-01 1 240966274 240966274 A T RGS7 Missense_Mutation p.M430K 0.06 deleterious(0) probably_damaging(0.968) TCGA-BH-A1FC-01 1 247264537 247264537 C G ZNF669 Silent p.L178L 0.18 TCGA-BH-A1FC-01 1 36054084 36054084 G A TFAP2E Missense_Mutation p.G239E 0.17 deleterious(0) probably_damaging(0.991) TCGA-BH-A1FC-01 1 38042076 38042076 G A GNL2 Missense_Mutation p.R331C 0.09 deleterious(0) probably_damaging(0.97) TCGA-BH-A1FC-01 1 40717294 40717294 G A TMCO2 3'UTR 0.11 TCGA-BH-A1FC-01 1 47504392 47504392 C G CYP4X1 Missense_Mutation p.P279R 0.10 tolerated(0.56) benign(0.002) TCGA-BH-A1FC-01 1 66064359 66064359 C G LEPR Nonsense_Mutation p.S289* 0.13 TCGA-BH-A1FC-01 1 76345774 76345774 G A MSH4 Missense_Mutation p.D573N 0.31 deleterious(0) probably_damaging(0.954) TCGA-BH-A1FC-01 1 76345830 76345830 G A MSH4 Missense_Mutation p.M591I 0.31 tolerated(0.1) benign(0.05) TCGA-BH-A1FC-01 21 34903121 34903121 C G GART Missense_Mutation p.E223Q 0.30 deleterious(0.01) benign(0.221) TCGA-BH-A1FC-01 21 47737979 47737979 C G C21orf58 Missense_Mutation p.D86H 0.09 deleterious(0.03) probably_damaging(0.957) TCGA-BH-A1FC-01 22 38891866 38891866 C G DDX17 Missense_Mutation p.R272T 0.36 deleterious(0.01) possibly_damaging(0.877) TCGA-BH-A1FC-01 2 109288844 109288844 G T LIMS1 Missense_Mutation p.R158L 0.08 tolerated(0.39) benign(0.175) TCGA-BH-A1FC-01 2 152424595 152424595 A G NEB Missense_Mutation p.V5945A 0.19 benign(0.295) TCGA-BH-A1FC-01 2 153497312 153497312 C T FMNL2 Missense_Mutation p.S1018F 0.11 possibly_damaging(0.683) TCGA-BH-A1FC-01 2 162813528 162813528 A G SLC4A10 Silent p.L857L 0.16 TCGA-BH-A1FC-01 2 190426750 190426750 C T SLC40A1 Missense_Mutation p.V524I 0.25 tolerated(0.12) possibly_damaging(0.683) TCGA-BH-A1FC-01 2 234879016 234879016 C T TRPM8 Silent p.P767P 0.08 TCGA-BH-A1FC-01 2 74783724 74783724 C T DOK1 Missense_Mutation p.S310F 0.15 deleterious(0.05) possibly_damaging(0.613) TCGA-BH-A1FC-01 2 80874762 80874762 T C CTNNA2 Missense_Mutation p.V828A 0.10 deleterious(0) probably_damaging(0.996) TCGA-BH-A1FC-01 2 86709180 86709180 C T KDM3A Silent p.N880N 0.42 TCGA-BH-A1FC-01 2 99013092 99013092 G A CNGA3 Missense_Mutation p.E487K 0.29 deleterious(0) probably_damaging(0.987) TCGA-BH-A1FC-01 2 99013166 99013166 G C CNGA3 Missense_Mutation p.K511N 0.41 deleterious(0) probably_damaging(0.925) TCGA-BH-A1FC-01 2 99449358 99449358 T C KIAA1211L Silent p.Q114Q 0.26 TCGA-BH-A1FC-01 3 121613290 121613290 T A SLC15A2 5'UTR 0.17 TCGA-BH-A1FC-01 3 174951757 174951757 G A NAALADL2 Missense_Mutation p.M194I 0.18 tolerated(0.21) benign(0.001) TCGA-BH-A1FC-01 3 32491026 32491026 C T CMTM7 Silent p.S138S 0.18 TCGA-BH-A1FC-01 3 38224558 38224558 C G OXSR1 Missense_Mutation p.I45M 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-BH-A1FC-01 3 49939908 49939908 C T MST1R Missense_Mutation p.D379N 0.38 deleterious(0.01) possibly_damaging(0.497) TCGA-BH-A1FC-01 4 123168490 123168490 A G KIAA1109 Silent p.Q1830Q 0.07 TCGA-BH-A1FC-01 4 15067831 15067831 G A CPEB2 Missense_Mutation p.A978T 0.15 tolerated_low_confidence(0.26) possibly_damaging(0.637) TCGA-BH-A1FC-01 4 15981063 15981064 - A PROM1 Frame_Shift_Ins p.Y846Lfs*3 0.28 TCGA-BH-A1FC-01 4 1737522 1737522 G T TACC3 Missense_Mutation p.S570I 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A1FC-01 4 48148341 48148341 C A TEC Splice_Site p.X361_splice 0.14 TCGA-BH-A1FC-01 4 67961 67961 G A Z95704.1 3'Flank 0.22 TCGA-BH-A1FC-01 4 76804229 76804229 C G PPEF2 Splice_Site p.X262_splice 0.18 TCGA-BH-A1FC-01 4 79188408 79188408 C T FRAS1 Missense_Mutation p.A268V 0.10 benign(0.006) TCGA-BH-A1FC-01 4 94159637 94159637 G A GRID2 Missense_Mutation p.R414Q 0.14 tolerated(0.13) benign(0.07) TCGA-BH-A1FC-01 4 95162063 95162063 G C SMARCAD1 Missense_Mutation p.G204A 0.24 tolerated(0.88) benign(0.003) TCGA-BH-A1FC-01 5 10390504 10390504 A C MARCH6 Silent p.A156A 0.20 TCGA-BH-A1FC-01 5 140735310 140735310 C T PCDHGA4 Silent p.D181D 0.25 TCGA-BH-A1FC-01 6 138752445 138752445 G T NHSL1 Missense_Mutation p.P1017T 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.695) TCGA-BH-A1FC-01 6 152861142 152861142 C G SYNE1 Missense_Mutation p.V28L 0.16 probably_damaging(0.963) TCGA-BH-A1FC-01 6 154489200 154489200 G A IPCEF1 Missense_Mutation p.S320L 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A1FC-01 6 34741413 34741413 C G SNRPC 3'UTR 0.22 TCGA-BH-A1FC-01 6 35705872 35705872 G C ARMC12 Missense_Mutation p.E105Q 0.13 tolerated(0.63) possibly_damaging(0.697) TCGA-BH-A1FC-01 6 75887490 75887490 T C COL12A1 Missense_Mutation p.R776G 0.19 benign(0.103) TCGA-BH-A1FC-01 6 88853975 88853975 C G CNR1 Missense_Mutation p.R340T 0.14 tolerated(0.05) probably_damaging(0.999) TCGA-BH-A1FC-01 6 90097153 90097153 C T RRAGD Missense_Mutation p.R102Q 0.18 tolerated(0.08) benign(0.023) TCGA-BH-A1FC-01 6 90642032 90642032 C T BACH2 3'UTR 0.21 TCGA-BH-A1FC-01 6 97613182 97613182 C G MMS22L Missense_Mutation p.R1054T 0.18 tolerated(0.22) benign(0.265) TCGA-BH-A1FC-01 7 100686638 100686638 A G MUC17 Missense_Mutation p.T3981A 0.17 benign(0.003) TCGA-BH-A1FC-01 7 130040629 130040629 C T CEP41 Missense_Mutation p.D226N 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A1FC-01 7 86539164 86539164 A G KIAA1324L Missense_Mutation p.S775P 0.33 deleterious(0) probably_damaging(0.959) TCGA-BH-A1FC-01 8 133044195 133044195 C T OC90 Missense_Mutation p.E322K 0.09 deleterious(0) possibly_damaging(0.801) TCGA-BH-A1FC-01 8 19694625 19694625 C T INTS10 Silent p.G531G 0.26 TCGA-BH-A1FC-01 8 24771805 24771805 G A NEFM Missense_Mutation p.E167K 0.17 deleterious(0.02) unknown(0) TCGA-BH-A1FC-01 8 25280779 25280779 C T GNRH1 Missense_Mutation p.S23N 0.12 deleterious(0) benign(0.265) TCGA-BH-A1FC-01 8 86569801 86569801 T C REXO1L1P 3'UTR 0.15 TCGA-BH-A1FC-01 9 119129992 119129992 G A PAPPA Missense_Mutation p.V1522M 0.08 tolerated(0.1) possibly_damaging(0.623) TCGA-BH-A1FC-01 9 131394528 131394528 C T SPTAN1 Silent p.L2295L 0.43 TCGA-BH-A1FC-01 9 139118623 139118624 - A QSOX2 Frame_Shift_Ins p.R143Pfs*4 0.12 TCGA-BH-A1FC-01 9 17761476 17761476 T A SH3GL2 Silent p.T52T 0.25 TCGA-BH-A1FC-01 9 21186857 21186857 C A IFNA4 3'UTR 0.47 TCGA-BH-A1FC-01 9 35396568 35396568 G C UNC13B Missense_Mutation p.V1053L 0.13 deleterious(0.05) benign(0.001) TCGA-BH-A1FC-01 X 64137656 64137656 C T ZC4H2 3'UTR 0.40 TCGA-BH-A1FC-01 X 67738655 67738655 G T YIPF6 Splice_Site p.X103_splice 0.36 TCGA-BH-A1FE-01 10 90427444 90427444 G T LIPF Splice_Site p.X85_splice 0.11 TCGA-BH-A1FE-01 11 46563682 46563683 - G AMBRA1 Frame_Shift_Ins p.S539Lfs*11 0.13 TCGA-BH-A1FE-01 11 47600307 47600307 A T KBTBD4 Intron 0.14 TCGA-BH-A1FE-01 12 56992346 56992346 T G BAZ2A 3'UTR 0.61 TCGA-BH-A1FE-01 12 6680052 6680052 C T CHD4 Missense_Mutation p.E1902K 0.09 deleterious(0.05) possibly_damaging(0.788) TCGA-BH-A1FE-01 12 86373133 86373133 C A MGAT4C Missense_Mutation p.R457S 0.06 deleterious(0) probably_damaging(0.964) TCGA-BH-A1FE-01 17 37880261 37880261 G T ERBB2 Missense_Mutation p.D769Y 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A1FE-01 17 7577541 7577541 T A TP53 Missense_Mutation p.N247I 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A1FE-01 19 10473108 10473108 G A TYK2 Missense_Mutation p.R501W 0.13 deleterious(0) possibly_damaging(0.462) TCGA-BH-A1FE-01 19 55708618 55708618 G C PTPRH Silent p.V619V 0.06 TCGA-BH-A1FE-01 1 155160715 155160715 T C MUC1 Missense_Mutation p.N271S 0.17 deleterious(0) probably_damaging(0.987) TCGA-BH-A1FE-01 1 186337036 186337036 C T TPR Missense_Mutation p.E137K 0.09 benign(0.292) TCGA-BH-A1FE-01 1 85555853 85555853 G A WDR63 Silent p.E265E 0.07 TCGA-BH-A1FE-01 2 228855865 228855865 G T SPHKAP Missense_Mutation p.P1604T 0.19 tolerated(0.42) benign(0.158) TCGA-BH-A1FE-01 3 127779451 127779451 G T SEC61A1 Missense_Mutation p.C188F 0.08 deleterious(0) probably_damaging(0.993) TCGA-BH-A1FE-01 3 136221515 136221515 C T STAG1 Silent p.K261K 0.04 TCGA-BH-A1FE-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.32 deleterious(0.03) probably_damaging(0.983) TCGA-BH-A1FE-01 4 56768606 56768606 G A EXOC1 Missense_Mutation p.V812I 0.08 tolerated(0.14) possibly_damaging(0.557) TCGA-BH-A1FE-01 6 49582475 49582475 G A RHAG Silent p.Y244Y 0.13 TCGA-BH-A1FE-01 7 100685739 100685739 G A MUC17 Missense_Mutation p.G3681D 0.21 benign(0.001) TCGA-BH-A1FE-01 7 135377059 135377059 G A SLC13A4 Intron 0.09 TCGA-BH-A1FE-01 7 43484487 43484487 C T HECW1 Silent p.S572S 0.14 TCGA-BH-A1FE-01 8 113299452 113299452 C T CSMD3 Missense_Mutation p.D3058N 0.27 tolerated(0.1) possibly_damaging(0.512) TCGA-BH-A1FE-01 8 3046527 3046527 C A CSMD1 Missense_Mutation p.C1802F 0.07 probably_damaging(0.999) TCGA-BH-A1FE-01 9 132571257 132571257 C T TOR1B Nonsense_Mutation p.Q239* 0.06 TCGA-BH-A1FE-01 9 214549 214550 - G C9orf66 Frame_Shift_Ins p.H283Pfs*22 0.21 TCGA-BH-A1FE-01 9 35706350 35706350 G A TLN1 Missense_Mutation p.A1735V 0.18 tolerated(0.46) benign(0.008) TCGA-BH-A1FE-01 X 63410125 63410125 C T AMER1 Silent p.G1014G 0.10 TCGA-BH-A1FG-01 10 5254676 5254676 G A AKR1C4 Missense_Mutation p.R223Q 0.14 deleterious(0.01) probably_damaging(1) TCGA-BH-A1FG-01 10 70174751 70174752 - G DNA2 3'UTR 0.23 TCGA-BH-A1FG-01 12 113553739 113553739 C A RASAL1 Missense_Mutation p.E283D 0.41 tolerated(0.05) possibly_damaging(0.769) TCGA-BH-A1FG-01 12 120635133 120635133 C T RPLP0 Missense_Mutation p.A262T 0.34 tolerated(0.05) possibly_damaging(0.734) TCGA-BH-A1FG-01 12 122674812 122674812 C T LRRC43 Silent p.Y266Y 0.10 TCGA-BH-A1FG-01 13 35785239 35785239 G C NBEA Silent p.V1857V 0.38 TCGA-BH-A1FG-01 17 26970251 26970251 G A KIAA0100 Silent p.F109F 0.60 TCGA-BH-A1FG-01 17 58257912 58257912 G C USP32 Missense_Mutation p.S1545R 0.27 deleterious(0) probably_damaging(0.99) TCGA-BH-A1FG-01 19 54849483 54849483 C T LILRA4 Missense_Mutation p.A127T 0.48 deleterious(0) possibly_damaging(0.908) TCGA-BH-A1FG-01 1 109553818 109553818 A C WDR47 Missense_Mutation p.L291V 0.13 tolerated(0.47) benign(0.235) TCGA-BH-A1FG-01 1 173155705 173155705 C T TNFSF4 Missense_Mutation p.G168R 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A1FG-01 1 47610609 47610609 G A CYP4A22 Missense_Mutation p.V397I 0.12 tolerated(1) benign(0.012) TCGA-BH-A1FG-01 21 33371391 33371391 A T HUNK Missense_Mutation p.Q680L 0.11 deleterious_low_confidence(0.04) benign(0.159) TCGA-BH-A1FG-01 2 189944701 189944701 T G COL5A2 Intron 0.13 TCGA-BH-A1FG-01 2 230663600 230663601 GA - TRIP12 Frame_Shift_Del p.S1083Qfs*2 0.30 TCGA-BH-A1FG-01 2 27262671 27262671 G A TMEM214 Missense_Mutation p.A530T 0.25 tolerated(0.35) benign(0.009) TCGA-BH-A1FG-01 2 74652076 74652076 A G WDR54 Silent p.T203T 0.25 TCGA-BH-A1FG-01 5 140725274 140725274 C T PCDHGA3 Silent p.N558N 0.10 TCGA-BH-A1FG-01 5 56171109 56171115 CTGTCTA - MAP3K1 Frame_Shift_Del p.V647Kfs*7 0.74 TCGA-BH-A1FG-01 5 89986809 89986809 A T GPR98 Missense_Mutation p.Q2301L 0.37 benign(0.403) TCGA-BH-A1FG-01 8 26227655 26227655 T A PPP2R2A Missense_Mutation p.V367D 0.67 deleterious(0) possibly_damaging(0.796) TCGA-BH-A1FG-01 X 102755501 102755501 G A RAB40A Missense_Mutation p.R62W 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-BH-A1FG-01 X 149613879 149613879 G A MAMLD1 Splice_Site p.X32_splice 0.44 TCGA-BH-A1FG-01 X 67741223 67741223 A G YIPF6 Silent p.Q106Q 0.42 TCGA-BH-A1FH-01 10 118738812 118738812 G A KIAA1598 Silent p.G22G 0.09 TCGA-BH-A1FH-01 10 8115843 8115844 - C GATA3 Frame_Shift_Ins p.R399Qfs*109 0.14 TCGA-BH-A1FH-01 11 56409117 56409117 G A OR5AP2 Missense_Mutation p.R267C 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-BH-A1FH-01 12 52911435 52911435 G T KRT5 Missense_Mutation p.A344D 0.09 deleterious(0) probably_damaging(0.992) TCGA-BH-A1FH-01 16 1551674 1551674 G A TELO2 Missense_Mutation p.V458I 0.08 tolerated(0.21) benign(0.009) TCGA-BH-A1FH-01 16 3255059 3255059 C T OR1F1 Silent p.D271D 0.07 TCGA-BH-A1FH-01 16 90103764 90103765 AG - GAS8 Frame_Shift_Del p.K295Tfs*34 0.15 TCGA-BH-A1FH-01 17 13446964 13446964 T G HS3ST3A1 Intron 0.07 TCGA-BH-A1FH-01 17 58125746 58125746 C T HEATR6 Missense_Mutation p.V851I 0.04 tolerated(0.08) benign(0.002) TCGA-BH-A1FH-01 17 58284466 58284466 G A USP32 Nonsense_Mutation p.R985* 0.04 TCGA-BH-A1FH-01 17 61557756 61557756 C T ACE Silent p.D238D 0.06 TCGA-BH-A1FH-01 17 61972406 61972406 A C CSH1 Silent p.S210S 0.08 TCGA-BH-A1FH-01 17 62248466 62248466 G A TEX2 Missense_Mutation p.H896Y 0.05 tolerated(0.35) benign(0.005) TCGA-BH-A1FH-01 19 43433645 43433645 G A PSG7 Missense_Mutation p.R220W 0.11 tolerated(0.15) benign(0.019) TCGA-BH-A1FH-01 19 46914834 46914834 C T CCDC8 Missense_Mutation p.V412I 0.06 benign(0.001) TCGA-BH-A1FH-01 19 9063288 9063288 G A MUC16 Missense_Mutation p.S8053F 0.05 unknown(0) TCGA-BH-A1FH-01 1 12266952 12266952 G A TNFRSF1B Missense_Mutation p.V421I 0.07 tolerated(0.29) possibly_damaging(0.746) TCGA-BH-A1FH-01 1 19570451 19570451 G A EMC1 Silent p.H93H 0.09 TCGA-BH-A1FH-01 1 205902197 205902197 C G SLC26A9 Missense_Mutation p.K47N 0.06 deleterious(0.01) probably_damaging(0.928) TCGA-BH-A1FH-01 20 11899227 11899227 C T BTBD3 Missense_Mutation p.L102F 0.11 tolerated(0.23) benign(0.003) TCGA-BH-A1FH-01 20 11904305 11904305 C T BTBD3 Silent p.F520F 0.12 TCGA-BH-A1FH-01 20 17339056 17339056 G A PCSK2 Missense_Mutation p.D123N 0.08 deleterious(0) possibly_damaging(0.9) TCGA-BH-A1FH-01 20 17446106 17446106 C T PCSK2 Silent p.V446V 0.07 TCGA-BH-A1FH-01 20 306848 306848 G A SOX12 Missense_Mutation p.E94K 0.15 deleterious(0) probably_damaging(0.966) TCGA-BH-A1FH-01 20 9353021 9353021 G A PLCB4 Silent p.R219R 0.27 TCGA-BH-A1FH-01 21 43897436 43897436 G A RSPH1 Missense_Mutation p.T231M 0.08 tolerated(0.23) benign(0.022) TCGA-BH-A1FH-01 2 234754375 234754375 T C HJURP Missense_Mutation p.E165G 0.10 tolerated(0.05) possibly_damaging(0.813) TCGA-BH-A1FH-01 3 154898322 154898322 G - MME 3'UTR 0.15 TCGA-BH-A1FH-01 4 52899721 52899721 A T SGCB Missense_Mutation p.F40Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-BH-A1FH-01 5 114566711 114566711 T C PGGT1B Missense_Mutation p.D207G 0.11 deleterious(0) probably_damaging(0.989) TCGA-BH-A1FH-01 5 35874552 35874552 G A IL7R Silent p.G236G 0.05 TCGA-BH-A1FH-01 6 100368772 100368772 A T MCHR2 3'UTR 0.07 TCGA-BH-A1FH-01 7 142168395 142168396 AG - TRBV5-4 Frame_Shift_Del p.A111Qfs*? 0.16 TCGA-BH-A1FH-01 7 72719078 72719078 C T NSUN5 Missense_Mutation p.A173T 0.13 tolerated(0.47) benign(0.003) TCGA-BH-A1FH-01 X 109764910 109764910 C A TDGF1P3 RNA 0.06 TCGA-BH-A1FH-01 X 140926104 140926104 G C MAGEC3 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.01) benign(0.005) TCGA-BH-A1FH-01 X 63444932 63444932 A T ASB12 Missense_Mutation p.L200H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FJ-01 10 111640657 111640657 G A XPNPEP1 Silent p.I358I 0.47 TCGA-BH-A1FJ-01 11 26586728 26586728 C T MUC15 Silent p.T253T 0.18 TCGA-BH-A1FJ-01 11 7324487 7324487 C T SYT9 Silent p.P121P 0.45 TCGA-BH-A1FJ-01 12 104408860 104408860 G A GLT8D2 Silent p.L15L 0.41 TCGA-BH-A1FJ-01 12 12870935 12870936 - GC CDKN1B Frame_Shift_Ins p.S56Rfs*16 0.35 TCGA-BH-A1FJ-01 12 81627233 81627233 G T ACSS3 Missense_Mutation p.A568S 0.46 tolerated(0.06) benign(0.249) TCGA-BH-A1FJ-01 12 8608644 8608644 C A CLEC6A 5'UTR 0.38 TCGA-BH-A1FJ-01 14 88414223 88414223 C T GALC Splice_Site p.X447_splice 0.23 TCGA-BH-A1FJ-01 15 43658586 43658586 C T ZSCAN29 Missense_Mutation p.G315D 0.45 deleterious(0) probably_damaging(1) TCGA-BH-A1FJ-01 16 21147728 21147728 G A DNAH3 Missense_Mutation p.T268M 0.45 tolerated(0.12) benign(0.007) TCGA-BH-A1FJ-01 17 37618580 37618580 G A CDK12 Missense_Mutation p.D86N 0.42 unknown(0) TCGA-BH-A1FJ-01 17 56356745 56356745 G A MPO Silent p.R197R 0.45 TCGA-BH-A1FJ-01 17 60782875 60782875 G A MARCH10 Intron 0.54 TCGA-BH-A1FJ-01 19 43430738 43430738 G T PSG7 Silent p.L280L 0.22 TCGA-BH-A1FJ-01 19 50302103 50302103 G T AP2A1 Missense_Mutation p.V287L 0.45 deleterious(0.04) benign(0.033) TCGA-BH-A1FJ-01 19 5641894 5641894 G A SAFB Silent p.S161S 0.33 TCGA-BH-A1FJ-01 19 5832191 5832191 G A FUT6 Nonsense_Mutation p.R130* 0.40 TCGA-BH-A1FJ-01 19 58790408 58790408 G C ZNF8 5'UTR 0.19 TCGA-BH-A1FJ-01 19 9000557 9000557 G A MUC16 Missense_Mutation p.P13476L 0.44 probably_damaging(0.994) TCGA-BH-A1FJ-01 1 152127447 152127447 C T RPTN Missense_Mutation p.G710S 0.21 tolerated(0.2) benign(0.045) TCGA-BH-A1FJ-01 1 155110475 155110475 A G SLC50A1 Silent p.K155K 0.08 TCGA-BH-A1FJ-01 1 166888546 166888546 G A ILDR2 3'UTR 0.19 TCGA-BH-A1FJ-01 1 179064465 179064465 C T TOR3A 3'UTR 0.22 TCGA-BH-A1FJ-01 1 182569531 182569531 G A RGS16 Missense_Mutation p.P169S 0.20 deleterious(0) possibly_damaging(0.665) TCGA-BH-A1FJ-01 1 74621549 74621549 C T LRRIQ3 Missense_Mutation p.G192E 0.50 tolerated(0.51) benign(0.135) TCGA-BH-A1FJ-01 20 30661574 30661574 C T HCK Silent p.H94H 0.20 TCGA-BH-A1FJ-01 22 36722682 36722682 C T MYH9 Silent p.T181T 0.43 TCGA-BH-A1FJ-01 2 32640667 32640669 AAT - BIRC6 In_Frame_Del p.N770del 0.50 TCGA-BH-A1FJ-01 2 54176382 54176382 T A PSME4 Missense_Mutation p.D94V 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A1FJ-01 2 70527971 70527971 C T FAM136A Splice_Site p.X76_splice 0.17 TCGA-BH-A1FJ-01 2 73315618 73315618 G A RAB11FIP5 Silent p.S376S 0.16 TCGA-BH-A1FJ-01 3 128706484 128706484 G A KIAA1257 Silent p.D214D 0.21 TCGA-BH-A1FJ-01 3 23934739 23934739 C T NKIRAS1 Silent p.E142E 0.06 TCGA-BH-A1FJ-01 3 50289959 50289959 C T GNAI2 Missense_Mutation p.P98S 0.40 tolerated(0.37) benign(0.005) TCGA-BH-A1FJ-01 3 57443861 57443861 G A DNAH12 Silent p.N983N 0.45 TCGA-BH-A1FJ-01 3 86115884 86115884 C A CADM2 Missense_Mutation p.A422D 0.46 deleterious(0) probably_damaging(0.988) TCGA-BH-A1FJ-01 5 34863073 34863073 G A TTC23L Silent p.T150T 0.38 TCGA-BH-A1FJ-01 5 35954396 35954396 C T UGT3A1 Missense_Mutation p.G494R 0.52 tolerated(0.09) probably_damaging(0.936) TCGA-BH-A1FJ-01 5 80382661 80382661 C T RASGRF2 Missense_Mutation p.H427Y 0.06 deleterious(0.04) benign(0.381) TCGA-BH-A1FJ-01 6 170844404 170844404 C T PSMB1 Silent p.A210A 0.10 TCGA-BH-A1FJ-01 6 56333793 56333793 A T DST Missense_Mutation p.F4896Y 0.14 benign(0.011) TCGA-BH-A1FJ-01 7 147183037 147183037 A C CNTNAP2 Missense_Mutation p.N561H 0.46 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FJ-01 8 86242048 86242048 A C CA1 Missense_Mutation p.F180C 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A1FJ-01 9 140356760 140356760 C T PNPLA7 Silent p.Q1172Q 0.21 TCGA-BH-A1FJ-01 X 129474313 129474313 G A SLC25A14 Missense_Mutation p.V21M 0.17 deleterious_low_confidence(0.02) benign(0.152) TCGA-BH-A1FJ-01 X 139586545 139586545 G A SOX3 Silent p.S227S 0.18 TCGA-BH-A1FJ-01 X 155003723 155003723 C T SPRY3 Missense_Mutation p.R64C 0.47 deleterious(0.01) possibly_damaging(0.642) TCGA-BH-A1FL-01 11 108032567 108032567 C T NPAT Silent p.K1082K 0.40 TCGA-BH-A1FL-01 11 118779066 118779066 C T BCL9L Missense_Mutation p.G109S 0.38 probably_damaging(0.934) TCGA-BH-A1FL-01 11 62378386 62378386 G A EML3 Silent p.S177S 0.25 TCGA-BH-A1FL-01 11 67186488 67186488 T C CARNS1 Missense_Mutation p.L209P 0.33 deleterious(0.03) probably_damaging(0.969) TCGA-BH-A1FL-01 14 38061213 38061213 T G FOXA1 Missense_Mutation p.Y259S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FL-01 15 41388029 41388029 G A INO80 Missense_Mutation p.L81F 0.33 tolerated(0.16) possibly_damaging(0.454) TCGA-BH-A1FL-01 16 62055218 62055218 A G CDH8 Silent p.A30A 0.80 TCGA-BH-A1FL-01 16 67100608 67100608 T G CBFB Missense_Mutation p.I102M 0.75 deleterious(0) possibly_damaging(0.888) TCGA-BH-A1FL-01 17 1650702 1650702 T C SERPINF2 Missense_Mutation p.I204T 0.38 deleterious(0.04) probably_damaging(0.978) TCGA-BH-A1FL-01 17 37988354 37988354 C A IKZF3 Missense_Mutation p.A20S 0.39 tolerated(0.24) benign(0.009) TCGA-BH-A1FL-01 17 43922347 43922347 C T SPPL2C Silent p.G25G 0.50 TCGA-BH-A1FL-01 17 53798135 53798136 - A TMEM100 Frame_Shift_Ins p.L99Ffs*91 0.31 TCGA-BH-A1FL-01 18 6961630 6961630 G A LAMA1 Silent p.L2527L 0.56 TCGA-BH-A1FL-01 19 18994907 18994907 G A CERS1 Silent p.S193S 0.32 TCGA-BH-A1FL-01 19 19257410 19257410 G A MEF2B Silent p.P241P 0.43 TCGA-BH-A1FL-01 19 6743794 6743794 T - TRIP10 Frame_Shift_Del p.F197Sfs*48 0.34 TCGA-BH-A1FL-01 1 10714015 10714015 G A CASZ1 Missense_Mutation p.S700L 0.43 tolerated(0.18) possibly_damaging(0.715) TCGA-BH-A1FL-01 1 155734834 155734834 G A GON4L Missense_Mutation p.S1477L 0.21 deleterious(0) possibly_damaging(0.765) TCGA-BH-A1FL-01 1 159804941 159804941 G A C1orf204 3'UTR 0.47 TCGA-BH-A1FL-01 20 49509507 49509508 - GTAA ADNP Frame_Shift_Ins p.H582Lfs*6 0.44 TCGA-BH-A1FL-01 21 47548908 47548908 C T COL6A2 Intron 0.28 TCGA-BH-A1FL-01 2 68413703 68413703 C T PPP3R1 Missense_Mutation p.G121E 0.45 deleterious(0) probably_damaging(0.994) TCGA-BH-A1FL-01 3 197249569 197249569 G A BDH1 Silent p.S117S 0.07 TCGA-BH-A1FL-01 3 9495453 9495453 A G SETD5 Missense_Mutation p.M793V 0.26 tolerated(0.23) benign(0.021) TCGA-BH-A1FL-01 6 27860804 27860804 C A HIST1H2AM Nonsense_Mutation p.E42* 0.26 TCGA-BH-A1FL-01 6 73787578 73787578 T C KCNQ5 Missense_Mutation p.S296P 0.21 tolerated(0.2) possibly_damaging(0.808) TCGA-BH-A1FL-01 X 100333936 100333936 G A TMEM35 5'UTR 0.48 TCGA-BH-A1FL-01 X 151092941 151092941 C T MAGEA4 Missense_Mutation p.R269C 0.60 tolerated(0.08) benign(0.008) TCGA-BH-A1FL-01 X 31200940 31200940 C T DMD Missense_Mutation p.V3297I 0.30 benign(0.153) TCGA-BH-A1FM-01 10 70507134 70507134 C T CCAR1 Nonsense_Mutation p.Q213* 0.70 TCGA-BH-A1FM-01 10 8111513 8111514 - G GATA3 Frame_Shift_Ins p.D336Gfs*17 0.18 TCGA-BH-A1FM-01 11 1276029 1276029 G A MUC5B Missense_Mutation p.V5195M 0.12 unknown(0) TCGA-BH-A1FM-01 11 66616565 66616565 C T PC Silent p.A1114A 0.26 TCGA-BH-A1FM-01 11 85966327 85966327 G A EED Missense_Mutation p.D142N 0.21 deleterious(0.04) benign(0.246) TCGA-BH-A1FM-01 11 87908404 87908404 A T RAB38 Missense_Mutation p.V50E 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-BH-A1FM-01 12 109998898 109998898 C T MMAB Silent p.K177K 0.35 TCGA-BH-A1FM-01 12 56737619 56737619 C A STAT2 Missense_Mutation p.E801D 0.40 tolerated_low_confidence(0.25) benign(0.006) TCGA-BH-A1FM-01 13 25743949 25743949 C T AMER2 Silent p.L603L 0.22 TCGA-BH-A1FM-01 13 49796405 49796405 G A MLNR Silent p.P377P 0.10 TCGA-BH-A1FM-01 13 78184194 78184194 C T SCEL Silent p.L430L 0.06 TCGA-BH-A1FM-01 14 103342790 103342790 G A TRAF3 Silent p.V166V 0.08 TCGA-BH-A1FM-01 14 91356949 91356949 G A RPS6KA5 Missense_Mutation p.P573L 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-BH-A1FM-01 16 20348714 20348714 G A UMOD Nonsense_Mutation p.R547* 0.07 TCGA-BH-A1FM-01 16 2048316 2048316 C T ZNF598 Missense_Mutation p.D878N 0.39 probably_damaging(0.999) TCGA-BH-A1FM-01 16 84270709 84270709 G A KCNG4 Missense_Mutation p.A128V 0.35 tolerated(0.08) probably_damaging(0.989) TCGA-BH-A1FM-01 17 12897755 12897755 C G ELAC2 Missense_Mutation p.E699Q 0.45 tolerated(0.11) probably_damaging(0.988) TCGA-BH-A1FM-01 17 12897815 12897815 C T ELAC2 Missense_Mutation p.D679N 0.50 tolerated(0.75) benign(0.052) TCGA-BH-A1FM-01 17 43213950 43213950 C T ACBD4 Missense_Mutation p.R58W 0.67 deleterious(0) probably_damaging(0.992) TCGA-BH-A1FM-01 17 7350401 7350401 C T CHRNB1 Silent p.V131V 0.74 TCGA-BH-A1FM-01 17 80443445 80443445 C G NARF Silent p.G348G 0.36 TCGA-BH-A1FM-01 19 12060223 12060223 C G ZNF700 Missense_Mutation p.R462G 0.32 deleterious(0.04) possibly_damaging(0.653) TCGA-BH-A1FM-01 19 13565940 13565940 G T CACNA1A Missense_Mutation p.T127N 0.22 possibly_damaging(0.607) TCGA-BH-A1FM-01 19 18245637 18245637 C T MAST3 Missense_Mutation p.T543M 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FM-01 19 39075687 39075687 C T RYR1 Silent p.F4917F 0.54 TCGA-BH-A1FM-01 19 56515226 56515226 C G NLRP5 Silent p.L69L 0.14 TCGA-BH-A1FM-01 1 1480373 1480373 C T SSU72 Silent p.Q78Q 0.10 TCGA-BH-A1FM-01 1 158669983 158669983 T C OR6K2 Missense_Mutation p.T154A 0.39 tolerated(0.5) benign(0.101) TCGA-BH-A1FM-01 1 215821936 215821936 G A USH2A Missense_Mutation p.T4839M 0.57 benign(0.16) TCGA-BH-A1FM-01 1 236143802 236143802 C T NID1 Missense_Mutation p.D1127N 0.32 deleterious(0) probably_damaging(0.996) TCGA-BH-A1FM-01 1 33238721 33238721 C G KIAA1522 3'UTR 0.62 TCGA-BH-A1FM-01 1 94520718 94520718 C A ABCA4 Missense_Mutation p.D846Y 0.29 deleterious(0) probably_damaging(0.987) TCGA-BH-A1FM-01 22 50719361 50719361 C T PLXNB2 Missense_Mutation p.E1269K 0.69 tolerated(0.14) probably_damaging(0.98) TCGA-BH-A1FM-01 2 204599579 204599579 C T CD28 Missense_Mutation p.R203C 0.52 deleterious(0) probably_damaging(0.95) TCGA-BH-A1FM-01 2 63053329 63053329 A T EHBP1 Silent p.P140P 0.08 TCGA-BH-A1FM-01 3 132175425 132175425 G A DNAJC13 Splice_Site p.X393_splice 0.06 TCGA-BH-A1FM-01 3 142131391 142131391 C T XRN1 Missense_Mutation p.D570N 0.04 tolerated(0.06) possibly_damaging(0.757) TCGA-BH-A1FM-01 3 170784390 170784390 T C TNIK Silent p.Q1278Q 0.12 TCGA-BH-A1FM-01 3 71161786 71161786 T C FOXP1 Silent p.A63A 0.34 TCGA-BH-A1FM-01 4 113461095 113461095 C G C4orf21 Missense_Mutation p.R2032S 0.08 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FM-01 4 126328230 126328230 A C FAT4 Missense_Mutation p.N1835H 0.10 probably_damaging(0.999) TCGA-BH-A1FM-01 4 175709965 175709965 A C GLRA3 Splice_Site p.X67_splice 0.31 TCGA-BH-A1FM-01 5 140167416 140167416 G T PCDHA1 Missense_Mutation p.S514I 0.36 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BH-A1FM-01 5 154395548 154395548 C T KIF4B Missense_Mutation p.A710V 0.37 tolerated(0.15) probably_damaging(0.996) TCGA-BH-A1FM-01 5 176885421 176885421 C T DBN1 Missense_Mutation p.A474T 0.27 tolerated(0.88) benign(0.003) TCGA-BH-A1FM-01 5 41049479 41049479 C A MROH2B Missense_Mutation p.E468D 0.26 tolerated(0.66) benign(0) TCGA-BH-A1FM-01 5 76028288 76028288 C G F2R Missense_Mutation p.L80V 0.23 tolerated(0.55) benign(0.007) TCGA-BH-A1FM-01 6 65767562 65767562 G T EYS Silent p.A694A 0.12 TCGA-BH-A1FM-01 7 43506115 43506115 C T HECW1 Missense_Mutation p.A954V 0.55 deleterious(0.02) probably_damaging(0.99) TCGA-BH-A1FM-01 7 48314081 48314081 C T ABCA13 Silent p.F1606F 0.08 TCGA-BH-A1FM-01 7 55914275 55914275 C T SEPT14 Missense_Mutation p.C37Y 0.37 deleterious(0) probably_damaging(0.909) TCGA-BH-A1FM-01 7 73008600 73008600 G A MLXIPL Intron 0.15 TCGA-BH-A1FM-01 7 80418832 80418834 CTC - SEMA3C In_Frame_Del p.G381del 0.44 TCGA-BH-A1FM-01 7 88956679 88956679 C T ZNF804B Missense_Mutation p.R91W 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A1FM-01 8 39495190 39495190 C T ADAM18 Silent p.I265I 0.21 TCGA-BH-A1FM-01 9 107332253 107332253 G C OR13C8 Missense_Mutation p.D269H 0.37 deleterious(0.01) possibly_damaging(0.468) TCGA-BH-A1FM-01 9 139368956 139368956 C G SEC16A Missense_Mutation p.D1038H 0.46 deleterious(0.02) probably_damaging(0.939) TCGA-BH-A1FM-01 9 139369265 139369265 C G SEC16A Missense_Mutation p.E935Q 0.35 tolerated(0.58) benign(0.002) TCGA-BH-A1FM-01 9 139369436 139369436 C T SEC16A Missense_Mutation p.D878N 0.30 tolerated(0.22) benign(0.083) TCGA-BH-A1FM-01 X 152807837 152807837 G A ATP2B3 Missense_Mutation p.E241K 0.36 deleterious(0) probably_damaging(1) TCGA-BH-A1FM-01 X 27997704 27997704 G T DCAF8L1 Missense_Mutation p.T583N 0.43 tolerated(0.25) benign(0.206) TCGA-BH-A1FM-01 X 53588774 53588774 G A HUWE1 Missense_Mutation p.R2484C 0.34 possibly_damaging(0.689) TCGA-BH-A1FM-01 X 54280410 54280410 C G WNK3 Missense_Mutation p.E783D 0.08 tolerated(0.12) probably_damaging(0.984) TCGA-BH-A1FM-01 X 54817311 54817311 G A ITIH6 Missense_Mutation p.P192L 0.19 tolerated(1) benign(0.022) TCGA-BH-A1FN-01 10 127789701 127789701 A G ADAM12 Missense_Mutation p.L287P 0.23 deleterious(0) probably_damaging(1) TCGA-BH-A1FN-01 10 27024211 27024211 G A PDSS1 Missense_Mutation p.A292T 0.44 deleterious(0.04) benign(0.376) TCGA-BH-A1FN-01 10 32337446 32337451 ACTGGA - KIF5B In_Frame_Del p.F52_Q53del 0.36 TCGA-BH-A1FN-01 10 47158895 47158895 T A ANXA8L1 Missense_Mutation p.E309V 0.23 deleterious(0.01) benign(0.009) TCGA-BH-A1FN-01 10 63852566 63852566 T A ARID5B Missense_Mutation p.L1115H 0.06 deleterious(0) probably_damaging(0.993) TCGA-BH-A1FN-01 10 75258420 75258420 G A USP54 Silent p.I1674I 0.93 TCGA-BH-A1FN-01 10 89692976 89693013 TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG - PTEN Splice_Site p.X154_splice 0.89 TCGA-BH-A1FN-01 10 93390161 93390164 CAGA - PPP1R3C Frame_Shift_Del p.C158Wfs*11 0.78 TCGA-BH-A1FN-01 11 110449937 110449937 G A ARHGAP20 3'UTR 0.50 TCGA-BH-A1FN-01 11 34999668 34999668 C T PDHX Intron 0.49 TCGA-BH-A1FN-01 11 563350 563350 G A RASSF7 Intron 0.33 TCGA-BH-A1FN-01 11 57265233 57265233 C A SLC43A1 Missense_Mutation p.G184V 0.19 tolerated(0.38) benign(0.35) TCGA-BH-A1FN-01 11 6191248 6191248 G A OR52B2 Silent p.G103G 0.39 TCGA-BH-A1FN-01 11 63995111 63995111 C T NUDT22 Silent p.S184S 0.38 TCGA-BH-A1FN-01 11 64435963 64435963 G T NRXN2 Missense_Mutation p.D437E 0.40 deleterious(0.01) benign(0.068) TCGA-BH-A1FN-01 12 40681167 40681167 C A LRRK2 Missense_Mutation p.L839I 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-BH-A1FN-01 12 56755197 56755197 C G APOF Missense_Mutation p.D265H 0.29 deleterious(0.01) benign(0.413) TCGA-BH-A1FN-01 12 6619500 6619500 C T NCAPD2 Intron 0.26 TCGA-BH-A1FN-01 12 8078450 8078450 G A SLC2A3 Missense_Mutation p.T319I 0.26 deleterious(0) probably_damaging(1) TCGA-BH-A1FN-01 12 81004320 81004320 A G PTPRQ Missense_Mutation p.I1608V 0.21 tolerated(0.85) benign(0.005) TCGA-BH-A1FN-01 12 9254262 9254262 G T A2M Nonsense_Mutation p.Y425* 0.64 TCGA-BH-A1FN-01 13 114321853 114321853 G A GRK1 Missense_Mutation p.R51H 0.23 deleterious(0) benign(0.183) TCGA-BH-A1FN-01 13 48916747 48916747 C T RB1 Nonsense_Mutation p.Q93* 0.71 TCGA-BH-A1FN-01 13 73345227 73345227 G C DIS3 Missense_Mutation p.D554E 0.28 tolerated(0.21) benign(0.018) TCGA-BH-A1FN-01 14 44973863 44973863 A C FSCB Silent p.V776V 0.21 TCGA-BH-A1FN-01 14 50044456 50044456 G A RPS29 3'UTR 0.47 TCGA-BH-A1FN-01 14 91360702 91360702 G T RPS6KA5 Intron 0.40 TCGA-BH-A1FN-01 15 34648639 34648639 G C NUTM1 Missense_Mutation p.E782D 0.78 tolerated(0.16) benign(0.003) TCGA-BH-A1FN-01 15 40998407 40998407 C A RAD51 Intron 0.63 TCGA-BH-A1FN-01 15 43569149 43569149 G C TGM7 Silent p.V628V 0.59 TCGA-BH-A1FN-01 15 43661287 43661287 C A ZSCAN29 Missense_Mutation p.E119D 0.60 deleterious(0.05) probably_damaging(0.984) TCGA-BH-A1FN-01 15 59417210 59417210 G A CCNB2 3'UTR 0.55 TCGA-BH-A1FN-01 16 27761615 27761615 A T KIAA0556 Missense_Mutation p.T1112S 0.32 deleterious(0.01) probably_damaging(1) TCGA-BH-A1FN-01 16 2821022 2821024 TTC - SRRM2 3'UTR 0.31 TCGA-BH-A1FN-01 16 2821885 2821885 C - TCEB2 Intron 0.53 TCGA-BH-A1FN-01 16 30408955 30408955 G A ZNF48 Silent p.V128V 0.43 TCGA-BH-A1FN-01 16 30794530 30794530 C T ZNF629 Silent p.P373P 0.43 TCGA-BH-A1FN-01 16 57803851 57803852 - A KIFC3 Frame_Shift_Ins p.S319Ffs*26 0.31 TCGA-BH-A1FN-01 16 74446736 74446736 C T CLEC18B Missense_Mutation p.G240E 0.09 deleterious(0) probably_damaging(0.984) TCGA-BH-A1FN-01 17 21731464 21731464 C A UBBP4 Missense_Mutation p.A180D 0.35 deleterious(0.04) benign(0.013) TCGA-BH-A1FN-01 17 41349048 41349048 G T NBR1 Nonsense_Mutation p.E651* 0.36 TCGA-BH-A1FN-01 17 45235570 45235570 A C CDC27 Splice_Site p.X159_splice 0.45 TCGA-BH-A1FN-01 17 45421643 45421643 C G EFCAB13 Missense_Mutation p.S140C 0.20 deleterious(0.05) probably_damaging(0.98) TCGA-BH-A1FN-01 17 48247653 48247653 G A SGCA Silent p.L299L 0.23 TCGA-BH-A1FN-01 17 73484883 73484883 C A KIAA0195 Missense_Mutation p.P219H 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-BH-A1FN-01 17 74208563 74208563 C T RNF157 Missense_Mutation p.G30E 0.39 deleterious(0) possibly_damaging(0.768) TCGA-BH-A1FN-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.65 deleterious(0) probably_damaging(0.947) TCGA-BH-A1FN-01 17 80018821 80018821 C T DUS1L Missense_Mutation p.E287K 0.32 tolerated(0.11) benign(0.013) TCGA-BH-A1FN-01 18 45566931 45566931 A G ZBTB7C Missense_Mutation p.I183T 0.47 tolerated(0.74) benign(0.019) TCGA-BH-A1FN-01 19 11557971 11557971 C T PRKCSH Missense_Mutation p.S282F 0.18 tolerated(0.12) benign(0.418) TCGA-BH-A1FN-01 19 20135146 20135146 G C ZNF682 Missense_Mutation p.L15V 0.50 tolerated(0.16) benign(0.001) TCGA-BH-A1FN-01 19 23542876 23542876 C T ZNF91 Missense_Mutation p.E969K 0.42 tolerated(0.72) probably_damaging(0.998) TCGA-BH-A1FN-01 19 34180251 34180251 C T CHST8 Silent p.F28F 0.52 TCGA-BH-A1FN-01 19 36332657 36332657 G T NPHS1 Silent p.A925A 0.20 TCGA-BH-A1FN-01 19 40595317 40595317 C T ZNF780A Intron 0.34 TCGA-BH-A1FN-01 19 48052598 48052598 C T ZNF541 Missense_Mutation p.S151N 0.19 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FN-01 19 48386834 48386834 C G SULT2A1 Missense_Mutation p.K115N 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A1FN-01 19 48386861 48386861 G T SULT2A1 Silent p.P106P 0.17 TCGA-BH-A1FN-01 19 50099663 50099663 G C PRR12 Missense_Mutation p.A691P 0.38 possibly_damaging(0.82) TCGA-BH-A1FN-01 19 51135658 51135658 C A SYT3 Nonsense_Mutation p.E187* 0.52 TCGA-BH-A1FN-01 19 58132824 58132824 C G ZNF134 3'UTR 0.17 TCGA-BH-A1FN-01 1 116666885 116666885 G C MAB21L3 Missense_Mutation p.D130H 0.42 deleterious(0) probably_damaging(0.995) TCGA-BH-A1FN-01 1 145441306 145441312 TCTGCAA - TXNIP 3'UTR 0.48 TCGA-BH-A1FN-01 1 152326689 152326689 A T FLG2 Missense_Mutation p.S1191R 0.18 unknown(0) TCGA-BH-A1FN-01 1 159275777 159275777 G A FCER1A Splice_Site p.X111_splice 0.20 TCGA-BH-A1FN-01 1 168549314 168549314 A C XCL1 Missense_Mutation p.E25D 0.22 tolerated(0.07) probably_damaging(1) TCGA-BH-A1FN-01 1 171254413 171254413 C G FMO1 Missense_Mutation p.I443M 0.19 deleterious(0.03) benign(0.113) TCGA-BH-A1FN-01 1 176863828 176863828 C G ASTN1 Missense_Mutation p.G937A 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A1FN-01 1 182908337 182908337 C G SHCBP1L Silent p.L350L 0.24 TCGA-BH-A1FN-01 1 186114610 186114610 A T HMCN1 Missense_Mutation p.Y4781F 0.33 probably_damaging(0.982) TCGA-BH-A1FN-01 1 197031086 197031086 C A F13B Missense_Mutation p.K93N 0.12 deleterious(0) probably_damaging(0.996) TCGA-BH-A1FN-01 1 197086988 197086988 C G ASPM Missense_Mutation p.Q1332H 0.14 deleterious(0.03) benign(0.213) TCGA-BH-A1FN-01 1 201980127 201980127 G C ELF3 5'UTR 0.18 TCGA-BH-A1FN-01 1 230459309 230459309 G A PGBD5 Silent p.I410I 0.40 TCGA-BH-A1FN-01 1 33999492 33999492 G A CSMD2 Missense_Mutation p.L3155F 0.42 tolerated(0.53) benign(0.001) TCGA-BH-A1FN-01 1 39895636 39895636 G C MACF1 Missense_Mutation p.E3614Q 0.26 benign(0.168) TCGA-BH-A1FN-01 1 46206927 46206927 G A IPP Missense_Mutation p.H124Y 0.19 deleterious(0.03) benign(0.032) TCGA-BH-A1FN-01 1 46290251 46290251 G C MAST2 Silent p.S108S 0.15 TCGA-BH-A1FN-01 1 66384309 66384309 G C PDE4B Missense_Mutation p.L24F 0.21 tolerated_low_confidence(0.72) benign(0.272) TCGA-BH-A1FN-01 20 17640650 17640650 G T RRBP1 Missense_Mutation p.A168D 0.58 tolerated(0.06) benign(0.197) TCGA-BH-A1FN-01 20 40043946 40043946 G C CHD6 Silent p.V2273V 0.38 TCGA-BH-A1FN-01 20 44869708 44869708 C T CDH22 Silent p.L148L 0.41 TCGA-BH-A1FN-01 20 57768189 57768189 T G ZNF831 Silent p.T705T 0.38 TCGA-BH-A1FN-01 21 45542081 45542081 G C PWP2 Missense_Mutation p.D554H 0.26 deleterious(0) probably_damaging(0.966) TCGA-BH-A1FN-01 22 19966462 19966462 G T ARVCF Missense_Mutation p.A513D 0.43 deleterious(0.03) possibly_damaging(0.897) TCGA-BH-A1FN-01 22 51019010 51019010 C A CHKB Nonsense_Mutation p.E221* 0.33 TCGA-BH-A1FN-01 2 177188193 177188193 G A MTX2 Splice_Site p.X70_splice 0.14 TCGA-BH-A1FN-01 2 179584070 179584070 A G TTN Missense_Mutation p.V8016A 0.11 TCGA-BH-A1FN-01 2 196619103 196619103 C T DNAH7 Missense_Mutation p.E3908K 0.55 deleterious(0.02) benign(0.217) TCGA-BH-A1FN-01 2 208994511 208994511 C T CRYGC Silent p.G2G 0.34 TCGA-BH-A1FN-01 2 228228327 228228327 T A TM4SF20 3'UTR 0.18 TCGA-BH-A1FN-01 2 238672126 238672126 T C LRRFIP1 Silent p.D590D 0.22 TCGA-BH-A1FN-01 2 37415655 37415655 T A SULT6B1 Missense_Mutation p.E5D 0.30 deleterious(0.02) possibly_damaging(0.606) TCGA-BH-A1FN-01 2 71191567 71191567 G C ATP6V1B1 Splice_Site p.X382_splice 0.23 TCGA-BH-A1FN-01 2 86308729 86308729 G A POLR1A Silent p.P306P 0.33 TCGA-BH-A1FN-01 2 9613060 9613060 G C CPSF3 Missense_Mutation p.E657Q 0.35 tolerated(0.27) benign(0.071) TCGA-BH-A1FN-01 3 125855661 125855661 G A ALDH1L1 Silent p.F440F 0.34 TCGA-BH-A1FN-01 3 130893828 130893828 C T NEK11 Intron 0.21 TCGA-BH-A1FN-01 3 130893938 130893938 A G NEK11 Intron 0.36 TCGA-BH-A1FN-01 3 133538685 133538685 G A SRPRB 3'UTR 0.11 TCGA-BH-A1FN-01 3 134264532 134264532 C G CEP63 Missense_Mutation p.I220M 0.23 deleterious(0) probably_damaging(0.947) TCGA-BH-A1FN-01 3 149238432 149238432 C G WWTR1 3'UTR 0.52 TCGA-BH-A1FN-01 3 195475921 195475921 G C MUC4 Missense_Mutation p.L5296V 0.15 benign(0.092) TCGA-BH-A1FN-01 3 62648054 62648054 C T CADPS Missense_Mutation p.E302K 0.71 deleterious(0) benign(0.292) TCGA-BH-A1FN-01 4 110791367 110791367 G C LRIT3 Missense_Mutation p.E488Q 0.43 tolerated(0.11) benign(0.018) TCGA-BH-A1FN-01 4 114177049 114177049 C G ANK2 Silent p.L383L 0.41 TCGA-BH-A1FN-01 4 153875460 153875460 G C FHDC1 Missense_Mutation p.E218Q 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A1FN-01 4 5627522 5627522 A G EVC2 Missense_Mutation p.L667P 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FN-01 4 6612888 6612888 G C MAN2B2 Missense_Mutation p.V816L 0.63 deleterious(0.05) benign(0.349) TCGA-BH-A1FN-01 4 76956247 76956247 G T CXCL11 Missense_Mutation p.Q72K 0.18 tolerated(0.24) benign(0.023) TCGA-BH-A1FN-01 4 88534180 88534180 A G DSPP Missense_Mutation p.E281G 0.21 benign(0.255) TCGA-BH-A1FN-01 4 94159585 94159585 C T GRID2 Missense_Mutation p.H397Y 0.44 tolerated(0.51) benign(0.008) TCGA-BH-A1FN-01 5 131822339 131822339 G A IRF1 Missense_Mutation p.L152F 0.42 tolerated(0.1) probably_damaging(0.999) TCGA-BH-A1FN-01 5 139494787 139494787 C A PURA 3'UTR 0.42 TCGA-BH-A1FN-01 5 16877797 16877797 C G MYO10 Missense_Mutation p.R14T 0.51 tolerated(0.16) probably_damaging(0.916) TCGA-BH-A1FN-01 5 171517330 171517330 G A STK10 Missense_Mutation p.R531C 0.27 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FN-01 5 178549700 178549700 G C ADAMTS2 Missense_Mutation p.I1011M 0.36 tolerated(0.23) benign(0.392) TCGA-BH-A1FN-01 5 36195293 36195293 T G NADK2 Missense_Mutation p.M428L 0.41 tolerated(0.29) benign(0) TCGA-BH-A1FN-01 5 36976318 36976318 T G NIPBL Missense_Mutation p.L437V 0.37 deleterious_low_confidence(0.01) benign(0.22) TCGA-BH-A1FN-01 5 92956811 92956811 G T FAM172A Missense_Mutation p.S378Y 0.38 deleterious(0) possibly_damaging(0.879) TCGA-BH-A1FN-01 6 107955358 107955358 C T SOBP Missense_Mutation p.P437L 0.29 deleterious(0) probably_damaging(0.966) TCGA-BH-A1FN-01 6 109803079 109803079 G - ZBTB24 Frame_Shift_Del p.H51Tfs*14 0.26 TCGA-BH-A1FN-01 6 130374131 130374131 G C L3MBTL3 Missense_Mutation p.E193Q 0.47 tolerated(0.13) possibly_damaging(0.579) TCGA-BH-A1FN-01 6 133078597 133078597 G A VNN2 Missense_Mutation p.P101L 0.15 deleterious(0.02) probably_damaging(1) TCGA-BH-A1FN-01 6 138582743 138582743 C T KIAA1244 Missense_Mutation p.S395L 0.53 deleterious(0) possibly_damaging(0.546) TCGA-BH-A1FN-01 6 149982827 149982827 C T LATS1 3'UTR 0.07 TCGA-BH-A1FN-01 6 163991979 163991979 G A QKI 3'UTR 0.18 TCGA-BH-A1FN-01 6 27114616 27114616 C T HIST1H2BK 5'UTR 0.40 TCGA-BH-A1FN-01 6 56044762 56044781 GGGTAGTCACTATATTGAAC - COL21A1 Frame_Shift_Del p.V79Cfs*10 0.61 TCGA-BH-A1FN-01 6 75796120 75796120 G A COL12A1 3'UTR 0.24 TCGA-BH-A1FN-01 7 100201486 100201486 G C PCOLCE Intron 0.24 TCGA-BH-A1FN-01 7 100486535 100486535 C G UFSP1 Missense_Mutation p.D120H 0.73 deleterious(0.04) probably_damaging(0.941) TCGA-BH-A1FN-01 7 107114853 107114853 T C GPR22 Silent p.C116C 0.37 TCGA-BH-A1FN-01 7 137206651 137206651 C T DGKI Missense_Mutation p.E737K 0.41 deleterious(0.01) possibly_damaging(0.725) TCGA-BH-A1FN-01 7 138601660 138601660 G A KIAA1549 Silent p.A904A 0.45 TCGA-BH-A1FN-01 7 47440386 47440386 G A TNS3 Silent p.S283S 0.40 TCGA-BH-A1FN-01 7 47835714 47835714 C G PKD1L1 Missense_Mutation p.R2743T 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-BH-A1FN-01 7 65546942 65546942 C T ASL Silent p.L55L 0.32 TCGA-BH-A1FN-01 7 87011255 87011255 G A CROT Silent p.V364V 0.16 TCGA-BH-A1FN-01 7 99767817 99767817 C A GPC2 3'UTR 0.38 TCGA-BH-A1FN-01 8 113267511 113267511 A C CSMD3 Silent p.T3336T 0.08 TCGA-BH-A1FN-01 8 120602841 120602841 C G ENPP2 Missense_Mutation p.E423Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BH-A1FN-01 8 6690241 6690241 C A GS1-24F4.2 5'Flank 0.67 TCGA-BH-A1FN-01 8 86572444 86572444 A T REXO1L1P 3'UTR 0.12 TCGA-BH-A1FN-01 8 98155289 98155289 C G CPQ Missense_Mutation p.H433D 0.57 deleterious(0) probably_damaging(1) TCGA-BH-A1FN-01 9 104124645 104124645 G T BAAT 3'UTR 0.42 TCGA-BH-A1FN-01 9 104125001 104125001 G A BAAT Silent p.F322F 0.47 TCGA-BH-A1FN-01 9 111674596 111674596 C G IKBKAP Silent p.R379R 0.19 TCGA-BH-A1FN-01 9 117168684 117168684 G A DFNB31 Silent p.P729P 0.53 TCGA-BH-A1FN-01 9 135205210 135205210 A C SETX Missense_Mutation p.I592S 0.30 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FN-01 9 19331976 19331976 G A DENND4C Missense_Mutation p.E752K 0.44 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FN-01 9 33442726 33442726 G A AQP3 Intron 0.41 TCGA-BH-A1FN-01 X 100229143 100229143 G C ARL13A Missense_Mutation p.L29F 0.40 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FN-01 X 117722098 117722098 A T DOCK11 Splice_Site p.X599_splice 0.16 TCGA-BH-A1FN-01 X 32380914 32380914 C G DMD Missense_Mutation p.K1772N 0.42 possibly_damaging(0.607) TCGA-BH-A1FR-01 12 132593193 132593193 C G EP400NL Missense_Mutation p.S322C 0.32 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-BH-A1FR-01 12 6167090 6167090 C T VWF Missense_Mutation p.A552T 0.40 deleterious(0.01) possibly_damaging(0.46) TCGA-BH-A1FR-01 13 38154780 38154780 C T POSTN Missense_Mutation p.G483S 0.23 deleterious(0.04) probably_damaging(1) TCGA-BH-A1FR-01 15 69553426 69553426 G T GLCE Missense_Mutation p.G196V 0.26 deleterious(0) probably_damaging(0.996) TCGA-BH-A1FR-01 16 602903 602903 G T CAPN15 Missense_Mutation p.W982L 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-BH-A1FR-01 18 32919834 32919834 A C ZNF24 Missense_Mutation p.L176R 0.44 tolerated(0.06) possibly_damaging(0.766) TCGA-BH-A1FR-01 19 40889792 40889792 G A HIPK4 Silent p.H240H 0.37 TCGA-BH-A1FR-01 19 45909830 45909830 C G CD3EAP 5'UTR 0.44 TCGA-BH-A1FR-01 1 24388443 24388443 T C MYOM3 Silent p.S1309S 0.38 TCGA-BH-A1FR-01 22 37603605 37603605 T A SSTR3 Missense_Mutation p.N80Y 0.43 deleterious(0) probably_damaging(0.954) TCGA-BH-A1FR-01 22 40417319 40417319 G T FAM83F Missense_Mutation p.D269Y 0.12 deleterious(0) probably_damaging(0.986) TCGA-BH-A1FR-01 2 108921678 108921678 G A SULT1C2 Missense_Mutation p.D196N 0.32 tolerated(0.09) benign(0.036) TCGA-BH-A1FR-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-BH-A1FR-01 3 130159669 130159669 C T COL6A5 Missense_Mutation p.R2163W 0.33 deleterious(0) benign(0.003) TCGA-BH-A1FR-01 6 33231274 33231274 T C VPS52 Missense_Mutation p.N594S 0.36 tolerated(0.95) benign(0.038) TCGA-BH-A1FR-01 8 7718209 7718209 C T SPAG11A Nonsense_Mutation p.Q86* 0.66 TCGA-BH-A1FR-01 X 125298568 125298568 C G DCAF12L2 Missense_Mutation p.G447A 0.28 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FU-01 10 116061134 116061134 G A AFAP1L2 Silent p.D507D 0.05 TCGA-BH-A1FU-01 10 26417388 26417388 C A MYO3A Missense_Mutation p.S728Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FU-01 10 69908182 69908182 C A MYPN Silent p.A401A 0.08 TCGA-BH-A1FU-01 10 81841597 81841597 T G TMEM254 Missense_Mutation p.W30G 0.05 deleterious(0.02) benign(0.201) TCGA-BH-A1FU-01 11 116628651 116628651 C T BUD13 Silent p.R505R 0.06 TCGA-BH-A1FU-01 11 125333426 125333426 T G FEZ1 Missense_Mutation p.E151A 0.09 deleterious(0.04) possibly_damaging(0.735) TCGA-BH-A1FU-01 11 27016367 27016367 G T FIBIN Silent p.L98L 0.24 TCGA-BH-A1FU-01 11 4510559 4510559 C T OR52K1 Silent p.I143I 0.07 TCGA-BH-A1FU-01 12 104208797 104208797 T A NT5DC3 Missense_Mutation p.D104V 0.14 deleterious(0) probably_damaging(1) TCGA-BH-A1FU-01 12 108090308 108090308 A G PWP1 Missense_Mutation p.Y187C 0.07 deleterious(0) probably_damaging(0.979) TCGA-BH-A1FU-01 12 53861207 53861207 C G PCBP2 Intron 0.10 TCGA-BH-A1FU-01 12 56705098 56705098 C T CNPY2 Missense_Mutation p.R102H 0.13 tolerated(0.13) probably_damaging(0.993) TCGA-BH-A1FU-01 12 95478406 95478406 T C FGD6 Missense_Mutation p.E1375G 0.09 deleterious(0) probably_damaging(0.994) TCGA-BH-A1FU-01 13 45983070 45983070 G A SLC25A30 Silent p.L68L 0.13 TCGA-BH-A1FU-01 14 20871929 20871929 G A TEP1 Missense_Mutation p.R383W 0.11 deleterious(0.03) benign(0.141) TCGA-BH-A1FU-01 14 24605394 24605394 G A PSME1 5'Flank 0.16 TCGA-BH-A1FU-01 14 74995713 74995713 G A LTBP2 Silent p.R700R 0.12 TCGA-BH-A1FU-01 14 77809768 77809768 G C TMED8 Missense_Mutation p.F171L 0.06 tolerated(0.11) probably_damaging(0.997) TCGA-BH-A1FU-01 14 93669796 93669796 A G C14orf142 3'UTR 0.32 TCGA-BH-A1FU-01 14 94741767 94741767 A G PPP4R4 Missense_Mutation p.T836A 0.08 tolerated_low_confidence(0.24) benign(0) TCGA-BH-A1FU-01 15 66819667 66819667 C G ZWILCH Missense_Mutation p.L287V 0.06 tolerated(0.67) benign(0.289) TCGA-BH-A1FU-01 15 75772232 75772232 G C PTPN9 Missense_Mutation p.F362L 0.08 deleterious(0) possibly_damaging(0.787) TCGA-BH-A1FU-01 16 30005704 30005704 C A HIRIP3 Missense_Mutation p.K254N 0.11 deleterious(0.04) benign(0.001) TCGA-BH-A1FU-01 16 30198152 30198152 G C CORO1A Missense_Mutation p.D113H 0.17 deleterious(0) possibly_damaging(0.488) TCGA-BH-A1FU-01 16 57684188 57684188 C T GPR56 5'UTR 0.11 TCGA-BH-A1FU-01 16 67655464 67655464 G A CTCF Missense_Mutation p.D443N 0.06 tolerated(0.68) benign(0.241) TCGA-BH-A1FU-01 16 70359483 70359483 T C DDX19B Missense_Mutation p.C167R 0.05 deleterious(0.03) probably_damaging(0.994) TCGA-BH-A1FU-01 17 32906113 32906113 A G C17orf102 Missense_Mutation p.S63P 0.20 deleterious(0) possibly_damaging(0.82) TCGA-BH-A1FU-01 17 33586469 33586469 T C SLFN5 Missense_Mutation p.S254P 0.06 tolerated(0.25) benign(0.076) TCGA-BH-A1FU-01 17 3732539 3732539 G A C17orf85 Missense_Mutation p.S160F 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A1FU-01 17 37868297 37868297 C G ERBB2 Missense_Mutation p.R340G 0.08 deleterious(0.01) benign(0.001) TCGA-BH-A1FU-01 17 72850911 72850911 G A GRIN2C Silent p.I107I 0.14 TCGA-BH-A1FU-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.23 tolerated(0.11) benign(0.308) TCGA-BH-A1FU-01 18 29171771 29171771 G A TTR 5'UTR 0.14 TCGA-BH-A1FU-01 18 55334385 55334385 T C ATP8B1 Missense_Mutation p.I742V 0.06 tolerated(0.06) possibly_damaging(0.573) TCGA-BH-A1FU-01 19 1953917 1953917 G A CSNK1G2 Intron 0.08 TCGA-BH-A1FU-01 19 36034654 36034654 C G GAPDHS Nonsense_Mutation p.Y327* 0.15 TCGA-BH-A1FU-01 19 39973556 39973556 G A TIMM50 Silent p.K200K 0.14 TCGA-BH-A1FU-01 19 46021008 46021008 G A VASP Silent p.Q31Q 0.07 TCGA-BH-A1FU-01 19 46341822 46341822 G A SYMPK Missense_Mutation p.S380L 0.13 tolerated(0.32) benign(0) TCGA-BH-A1FU-01 19 46857002 46857002 C T PPP5C Intron 0.20 TCGA-BH-A1FU-01 19 48949228 48949228 C G GRWD1 5'UTR 0.16 TCGA-BH-A1FU-01 19 49526242 49526242 G C CGB Silent p.P133P 0.19 TCGA-BH-A1FU-01 19 52023321 52023321 G T SIGLEC6 3'UTR 0.09 TCGA-BH-A1FU-01 1 1337496 1337496 T G MRPL20 Missense_Mutation p.E139D 0.14 tolerated(0.19) benign(0.008) TCGA-BH-A1FU-01 1 152283809 152283809 C A FLG Missense_Mutation p.V1185L 0.05 benign(0.097) TCGA-BH-A1FU-01 1 158368363 158368363 T G OR10T2 Missense_Mutation p.K298N 0.11 deleterious(0) probably_damaging(0.999) TCGA-BH-A1FU-01 1 158637768 158637768 T G SPTA1 Missense_Mutation p.I640L 0.19 tolerated(1) benign(0.002) TCGA-BH-A1FU-01 1 160969973 160969973 T C F11R Missense_Mutation p.N185S 0.11 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FU-01 1 176863825 176863825 C T ASTN1 Missense_Mutation p.R938Q 0.09 tolerated(0.23) benign(0.025) TCGA-BH-A1FU-01 1 177250489 177250489 G A BRINP2 Missense_Mutation p.R726Q 0.22 deleterious(0) probably_damaging(0.992) TCGA-BH-A1FU-01 1 186934638 186934638 C T PLA2G4A Silent p.P559P 0.13 TCGA-BH-A1FU-01 1 210415429 210415429 T C SERTAD4 Missense_Mutation p.L273P 0.13 tolerated(0.24) benign(0.001) TCGA-BH-A1FU-01 1 222801377 222801377 C G MIA3 Missense_Mutation p.T272S 0.06 tolerated(0.38) benign(0.128) TCGA-BH-A1FU-01 1 231376986 231376986 G C GNPAT 5'UTR 0.10 TCGA-BH-A1FU-01 1 3329041 3329041 C T PRDM16 Silent p.D760D 0.26 TCGA-BH-A1FU-01 1 35333168 35333168 T C DLGAP3 Missense_Mutation p.Q849R 0.08 deleterious(0.02) probably_damaging(0.982) TCGA-BH-A1FU-01 1 36751975 36751975 G C THRAP3 Missense_Mutation p.R48S 0.11 deleterious_low_confidence(0) unknown(0) TCGA-BH-A1FU-01 1 44085855 44085855 T C PTPRF Missense_Mutation p.I1734T 0.08 deleterious(0.01) probably_damaging(1) TCGA-BH-A1FU-01 20 23016466 23016466 T C SSTR4 Missense_Mutation p.S116P 0.17 tolerated(0.25) benign(0.021) TCGA-BH-A1FU-01 20 23016467 23016467 C T SSTR4 Missense_Mutation p.S116F 0.17 deleterious(0) possibly_damaging(0.739) TCGA-BH-A1FU-01 20 33582022 33582022 T G MYH7B Missense_Mutation p.F882V 0.08 probably_damaging(1) TCGA-BH-A1FU-01 20 53208277 53208277 T C DOK5 Missense_Mutation p.S178P 0.09 tolerated(0.07) possibly_damaging(0.88) TCGA-BH-A1FU-01 21 16339517 16339517 A G NRIP1 Missense_Mutation p.S333P 0.07 tolerated(0.16) benign(0.025) TCGA-BH-A1FU-01 21 40568382 40568382 G C BRWD1 Intron 0.10 TCGA-BH-A1FU-01 22 39096187 39096187 C G JOSD1 5'UTR 0.19 TCGA-BH-A1FU-01 2 167060736 167060736 C G SCN9A Splice_Site p.X1491_splice 0.07 TCGA-BH-A1FU-01 2 172647963 172647963 G A SLC25A12 Missense_Mutation p.A528V 0.10 deleterious(0) probably_damaging(0.943) TCGA-BH-A1FU-01 2 174131568 174131568 G T MLTK 3'UTR 0.13 TCGA-BH-A1FU-01 2 182781142 182781142 G T SSFA2 Missense_Mutation p.Q925H 0.11 tolerated(0.06) probably_damaging(0.967) TCGA-BH-A1FU-01 2 191375133 191375133 C T TMEM194B Missense_Mutation p.D362N 0.09 tolerated(0.12) benign(0.115) TCGA-BH-A1FU-01 2 197105255 197105255 C A HECW2 Missense_Mutation p.D1228Y 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A1FU-01 2 202611323 202611323 C G ALS2 Missense_Mutation p.G655A 0.10 tolerated(0.5) benign(0.001) TCGA-BH-A1FU-01 2 238245112 238245112 C A COL6A3 Silent p.V2877V 0.04 TCGA-BH-A1FU-01 2 238283443 238283443 C T COL6A3 Silent p.Q1097Q 0.08 TCGA-BH-A1FU-01 2 73467661 73467661 A T CCT7 Missense_Mutation p.Q86L 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A1FU-01 3 102171968 102171968 T A ZPLD1 Nonsense_Mutation p.C120* 0.09 TCGA-BH-A1FU-01 3 111603528 111603528 C T PHLDB2 Missense_Mutation p.P202S 0.10 deleterious(0) probably_damaging(0.983) TCGA-BH-A1FU-01 3 133356889 133356889 T C TOPBP1 Missense_Mutation p.N784S 0.10 deleterious(0.04) benign(0.023) TCGA-BH-A1FU-01 3 170078686 170078686 A T SKIL Missense_Mutation p.E189D 0.10 tolerated(0.16) benign(0.005) TCGA-BH-A1FU-01 3 196435591 196435591 A C CEP19 5'UTR 0.10 TCGA-BH-A1FU-01 3 27760081 27760081 T C EOMES Missense_Mutation p.D459G 0.11 deleterious(0) probably_damaging(0.998) TCGA-BH-A1FU-01 4 110789015 110789015 A G LRIT3 Missense_Mutation p.N270D 0.06 deleterious(0) probably_damaging(0.996) TCGA-BH-A1FU-01 4 146807152 146807152 C G ZNF827 Missense_Mutation p.K475N 0.05 deleterious(0.01) possibly_damaging(0.765) TCGA-BH-A1FU-01 4 155411776 155411776 C T DCHS2 Silent p.E244E 0.11 TCGA-BH-A1FU-01 4 2045616 2045616 G A C4orf48 Missense_Mutation p.R117H 0.11 deleterious(0) possibly_damaging(0.741) TCGA-BH-A1FU-01 4 248286 248286 T C ZNF876P RNA 0.16 TCGA-BH-A1FU-01 4 25806205 25806205 G C SEL1L3 Silent p.V578V 0.14 TCGA-BH-A1FU-01 5 112891749 112891749 A T YTHDC2 Nonsense_Mutation p.K712* 0.07 TCGA-BH-A1FU-01 5 130857147 130857147 G C RAPGEF6 Missense_Mutation p.S188C 0.12 deleterious(0) possibly_damaging(0.88) TCGA-BH-A1FU-01 5 140229751 140229751 C T PCDHA9 Silent p.D557D 0.10 TCGA-BH-A1FU-01 5 140580264 140580264 C T PCDHB11 Missense_Mutation p.P306L 0.06 tolerated_low_confidence(0.58) benign(0.002) TCGA-BH-A1FU-01 5 140769344 140769344 C T PCDHGB4 Silent p.G631G 0.13 TCGA-BH-A1FU-01 5 175813843 175813843 T C NOP16 Missense_Mutation p.N95S 0.07 tolerated(0.12) benign(0.194) TCGA-BH-A1FU-01 5 43508740 43508740 C A C5orf34 Missense_Mutation p.R75L 0.08 deleterious(0) probably_damaging(1) TCGA-BH-A1FU-01 5 79768668 79768668 G A ZFYVE16 Silent p.G1371G 0.07 TCGA-BH-A1FU-01 5 81614085 81614085 T C ATP6AP1L Missense_Mutation p.L214P 0.20 deleterious(0) probably_damaging(1) TCGA-BH-A1FU-01 5 94417232 94417232 C G MCTP1 Intron 0.08 TCGA-BH-A1FU-01 6 101109738 101109738 G A ASCC3 Nonsense_Mutation p.R883* 0.06 TCGA-BH-A1FU-01 6 35765015 35765015 T C CLPS Silent p.A17A 0.09 TCGA-BH-A1FU-01 6 38816466 38816466 T A DNAH8 Nonsense_Mutation p.Y1479* 0.16 TCGA-BH-A1FU-01 6 4032112 4032112 G C PRPF4B Missense_Mutation p.D121H 0.07 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BH-A1FU-01 6 84650315 84650315 T G CYB5R4 Missense_Mutation p.D447E 0.09 tolerated(0.22) benign(0.052) TCGA-BH-A1FU-01 6 89967640 89967640 C A GABRR2 Nonsense_Mutation p.E383* 0.09 TCGA-BH-A1FU-01 6 90440536 90440536 T A MDN1 Missense_Mutation p.K1683N 0.06 benign(0.029) TCGA-BH-A1FU-01 7 21677232 21677232 T C DNAH11 Silent p.L1582L 0.05 TCGA-BH-A1FU-01 7 23207557 23207557 A G KLHL7 Missense_Mutation p.E427G 0.11 tolerated(0.18) possibly_damaging(0.87) TCGA-BH-A1FU-01 7 28527799 28527799 G A CREB5 Missense_Mutation p.E4K 0.08 tolerated_low_confidence(0.12) benign(0.001) TCGA-BH-A1FU-01 7 6431652 6431652 C T RAC1 Missense_Mutation p.P69S 0.08 deleterious(0) probably_damaging(0.991) TCGA-BH-A1FU-01 8 124204084 124204084 C G FAM83A Missense_Mutation p.I174M 0.09 deleterious(0) probably_damaging(0.997) TCGA-BH-A1FU-01 8 3263737 3263737 C A CSMD1 Missense_Mutation p.G693V 0.09 probably_damaging(1) TCGA-BH-A1FU-01 8 57080720 57080720 G A PLAG1 Nonsense_Mutation p.Q37* 0.07 TCGA-BH-A1FU-01 8 73480513 73480513 T C KCNB2 Silent p.L182L 0.14 TCGA-BH-A1FU-01 8 86357403 86357403 G A CA3 Missense_Mutation p.E155K 0.05 tolerated(0.67) benign(0.119) TCGA-BH-A1FU-01 8 95403934 95403934 C T RAD54B Missense_Mutation p.C571Y 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-BH-A1FU-01 9 114997150 114997150 T A PTBP3 Missense_Mutation p.Y311F 0.19 tolerated(0.36) benign(0.063) TCGA-BH-A1FU-01 X 1409232 1409232 G A CSF2RA Missense_Mutation p.R159K 0.05 tolerated(1) benign(0.042) TCGA-BH-A1FU-01 X 72433188 72433188 A T NAP1L2 Missense_Mutation p.S381T 0.07 tolerated(0.42) benign(0.159) TCGA-BH-A201-01 10 128147693 128147693 G A C10orf90 Missense_Mutation p.R605W 0.06 deleterious(0) possibly_damaging(0.629) TCGA-BH-A201-01 10 70737326 70737326 A G DDX21 Missense_Mutation p.K595R 0.25 tolerated(0.73) benign(0.005) TCGA-BH-A201-01 11 116766967 116766967 A G SIK3 Splice_Site p.X231_splice 0.31 TCGA-BH-A201-01 15 102263346 102263346 C T TARSL2 Missense_Mutation p.D107N 0.26 tolerated(0.26) benign(0.014) TCGA-BH-A201-01 16 15702158 15702158 T C KIAA0430 Missense_Mutation p.H1391R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A201-01 18 9524597 9524597 C T RALBP1 Silent p.S353S 0.35 TCGA-BH-A201-01 1 17727957 17727957 C A PADI6 RNA 0.31 TCGA-BH-A201-01 1 6511727 6511727 G T ESPN Missense_Mutation p.K660N 0.12 deleterious(0.02) probably_damaging(0.938) TCGA-BH-A201-01 1 7980932 7980932 C T TNFRSF9 Missense_Mutation p.R244Q 0.24 tolerated(0.07) benign(0.177) TCGA-BH-A201-01 1 8075288 8075288 T A ERRFI1 Intron 0.16 TCGA-BH-A201-01 20 49575041 49575041 C T DPM1 Missense_Mutation p.S7N 0.29 tolerated_low_confidence(0.1) benign(0.184) TCGA-BH-A201-01 2 184023015 184023015 C A NUP35 Missense_Mutation p.S205Y 0.17 deleterious(0.02) probably_damaging(0.949) TCGA-BH-A201-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.23 deleterious(0) probably_damaging(0.96) TCGA-BH-A201-01 2 231775625 231775625 A G GPR55 Missense_Mutation p.L18P 0.26 tolerated(0.09) benign(0.052) TCGA-BH-A201-01 2 31588379 31588379 G A XDH Missense_Mutation p.R830C 0.24 deleterious(0.01) probably_damaging(1) TCGA-BH-A201-01 3 178928072 178928098 TGGATTAGAAGATTTGCTGAACCCTAT - PIK3CA In_Frame_Del p.L452_G460del 0.33 TCGA-BH-A201-01 5 149513212 149513212 A G PDGFRB Missense_Mutation p.C291R 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A201-01 5 95194554 95194554 T A C5orf27 Missense_Mutation p.W41R 0.30 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-BH-A201-01 6 136603780 136603780 T C BCLAF1 5'UTR 0.21 TCGA-BH-A201-01 6 27420179 27420179 C T ZNF184 Missense_Mutation p.E387K 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-BH-A201-01 7 100205270 100205270 G A PCOLCE Silent p.A341A 0.30 TCGA-BH-A201-01 8 86569796 86569796 G T REXO1L1P 3'UTR 0.12 TCGA-BH-A201-01 9 133917083 133917083 G A LAMC3 Missense_Mutation p.C448Y 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A201-01 X 105149332 105149332 G A NRK Missense_Mutation p.G281R 0.04 tolerated(0.11) benign(0.177) TCGA-BH-A201-01 X 123514548 123514548 C G TENM1 Silent p.G2679G 0.27 TCGA-BH-A201-01 X 153073934 153073934 G C PDZD4 Missense_Mutation p.D59E 0.19 tolerated(0.27) benign(0.001) TCGA-BH-A201-01 X 3544506 3544506 G T PRKX Missense_Mutation p.L257I 0.28 tolerated(0.08) possibly_damaging(0.629) TCGA-BH-A201-01 X 62875545 62875545 C T ARHGEF9 Missense_Mutation p.E377K 0.11 tolerated(0.12) benign(0.014) TCGA-BH-A202-01 10 48413719 48413719 C A GDF2 Missense_Mutation p.K383N 0.56 tolerated(0.18) probably_damaging(0.966) TCGA-BH-A202-01 11 65064614 65064614 G A POLA2 Silent p.V557V 0.38 TCGA-BH-A202-01 11 67202569 67202569 G A RPS6KB2 Missense_Mutation p.A460T 0.40 deleterious_low_confidence(0) unknown(0) TCGA-BH-A202-01 12 107080750 107080750 A C RFX4 Missense_Mutation p.T165P 0.17 tolerated(0.07) benign(0.004) TCGA-BH-A202-01 12 62965209 62965209 C G MON2 Missense_Mutation p.P1454R 0.38 deleterious(0.02) probably_damaging(0.965) TCGA-BH-A202-01 13 48934189 48934189 C A RB1 Nonsense_Mutation p.S215* 0.47 TCGA-BH-A202-01 15 52350913 52350913 G C MAPK6 Missense_Mutation p.V262L 0.15 deleterious(0.05) benign(0.033) TCGA-BH-A202-01 16 57290919 57290921 ATC - PLLP In_Frame_Del p.M151del 0.14 TCGA-BH-A202-01 16 66974233 66974233 C T CES2 Missense_Mutation p.R242C 0.54 deleterious(0) possibly_damaging(0.642) TCGA-BH-A202-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.49 TCGA-BH-A202-01 19 44612139 44612139 C T ZNF224 Missense_Mutation p.S609L 0.40 tolerated(0.12) probably_damaging(0.991) TCGA-BH-A202-01 1 113231673 113231673 T G MOV10 Missense_Mutation p.V85G 0.26 tolerated(0.44) benign(0.005) TCGA-BH-A202-01 1 156237972 156237972 C T SMG5 Missense_Mutation p.C281Y 0.43 tolerated(0.08) benign(0.29) TCGA-BH-A202-01 1 216219877 216219877 G T USH2A Missense_Mutation p.S2074Y 0.17 benign(0.103) TCGA-BH-A202-01 21 36206776 36206777 - G RUNX1 Frame_Shift_Ins p.T246Hfs*15 0.35 TCGA-BH-A202-01 22 22277563 22277563 C T PPM1F Missense_Mutation p.G423R 0.45 tolerated(0.3) benign(0.005) TCGA-BH-A202-01 3 126730837 126730837 G A PLXNA1 Missense_Mutation p.V717M 0.25 deleterious(0.01) benign(0.02) TCGA-BH-A202-01 3 132166751 132166751 A G DNAJC13 Missense_Mutation p.T102A 0.31 tolerated(0.76) benign(0.002) TCGA-BH-A202-01 3 178922325 178922325 A T PIK3CA Missense_Mutation p.E365V 0.27 deleterious(0) probably_damaging(0.993) TCGA-BH-A202-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.25 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A202-01 3 63594947 63594947 C T SYNPR Silent p.C185C 0.36 TCGA-BH-A202-01 4 186299232 186299232 T C LRP2BP Intron 0.22 TCGA-BH-A202-01 5 150133164 150133164 T A DCTN4 Missense_Mutation p.T88S 0.06 tolerated(0.18) benign(0.328) TCGA-BH-A202-01 6 149847870 149847870 C T PPIL4 Missense_Mutation p.V241I 0.20 deleterious(0.04) possibly_damaging(0.751) TCGA-BH-A202-01 6 16327705 16327705 G C ATXN1 Missense_Mutation p.H279Q 0.37 tolerated(0.24) possibly_damaging(0.649) TCGA-BH-A202-01 7 123671896 123671896 C A TMEM229A 3'UTR 0.08 TCGA-BH-A202-01 7 151874957 151874972 ATTTAAAGGCCTAGGC - KMT2C Frame_Shift_Del p.M2522Ifs*5 0.23 TCGA-BH-A202-01 8 144945136 144945136 G A EPPK1 Silent p.D762D 0.16 TCGA-BH-A202-01 8 16035439 16035439 G T MSR1 Missense_Mutation p.S20Y 0.39 deleterious(0.01) probably_damaging(0.968) TCGA-BH-A202-01 9 127652728 127652728 G A GOLGA1 Silent p.S479S 0.05 TCGA-BH-A202-01 X 13781897 13781897 G T OFD1 Missense_Mutation p.G841V 0.14 deleterious(0) benign(0.18) TCGA-BH-A203-01 10 103867910 103867910 G A LDB1 Silent p.S392S 0.33 TCGA-BH-A203-01 10 124172451 124172451 G C PLEKHA1 Missense_Mutation p.D120H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A203-01 10 126683158 126683158 G A CTBP2 Silent p.S760S 0.11 TCGA-BH-A203-01 10 24896748 24896748 G T ARHGAP21 Missense_Mutation p.P836H 0.39 deleterious(0) probably_damaging(0.975) TCGA-BH-A203-01 10 63983073 63983073 C T RTKN2 Silent p.L235L 0.04 TCGA-BH-A203-01 10 71128354 71128354 C T HK1 Silent p.V190V 0.13 TCGA-BH-A203-01 10 71128375 71128375 C T HK1 Silent p.I197I 0.15 TCGA-BH-A203-01 10 97625946 97625946 G C ENTPD1 Missense_Mutation p.D459H 0.09 deleterious(0) probably_damaging(0.955) TCGA-BH-A203-01 11 110030002 110030002 T A ZC3H12C Nonsense_Mutation p.L312* 0.15 TCGA-BH-A203-01 11 71185527 71185527 C T NADSYN1 Silent p.N251N 0.12 TCGA-BH-A203-01 12 122985279 122985279 C T ZCCHC8 Missense_Mutation p.D37N 0.09 deleterious(0.02) benign(0.206) TCGA-BH-A203-01 12 49426774 49426774 T A KMT2D Missense_Mutation p.Q3905L 0.14 unknown(0) TCGA-BH-A203-01 12 56351845 56351845 C T PMEL Missense_Mutation p.G165S 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A203-01 12 57619524 57619524 C T NXPH4 Silent p.F307F 0.27 TCGA-BH-A203-01 13 114292199 114292199 G A TFDP1 Missense_Mutation p.R358K 0.13 tolerated(0.31) benign(0.146) TCGA-BH-A203-01 13 28537414 28537414 C T CDX2 Silent p.P260P 0.18 TCGA-BH-A203-01 13 79896574 79896574 G A RBM26 Silent p.F921F 0.26 TCGA-BH-A203-01 14 68238906 68238906 G T ZFYVE26 Missense_Mutation p.P1781H 0.14 deleterious(0) possibly_damaging(0.846) TCGA-BH-A203-01 14 69259611 69259629 TTCGCTCAAGTCGAAGATG - ZFP36L1 Frame_Shift_Del p.I10Ffs*64 0.30 TCGA-BH-A203-01 14 81329162 81329162 T C CEP128 Missense_Mutation p.E234G 0.15 deleterious(0.04) probably_damaging(0.969) TCGA-BH-A203-01 15 25953373 25953373 C G ATP10A Missense_Mutation p.G807R 0.23 deleterious(0) probably_damaging(0.998) TCGA-BH-A203-01 16 16282792 16282792 C T ABCC6 Missense_Mutation p.E559K 0.14 tolerated(0.07) benign(0.015) TCGA-BH-A203-01 16 23614905 23614905 G A PALB2 Nonsense_Mutation p.Q1146* 0.20 TCGA-BH-A203-01 16 29706325 29706325 C G QPRT Silent p.A118A 0.12 TCGA-BH-A203-01 16 31138408 31138408 C T KAT8 Missense_Mutation p.A172V 0.21 tolerated(0.07) benign(0.109) TCGA-BH-A203-01 16 67196943 67196943 G A FBXL8 Silent p.P115P 0.50 TCGA-BH-A203-01 16 69974739 69974739 C T WWP2 3'UTR 0.19 TCGA-BH-A203-01 16 84690716 84690716 G A KLHL36 Silent p.V101V 0.25 TCGA-BH-A203-01 17 72352853 72352853 C A BTBD17 Silent p.L460L 0.07 TCGA-BH-A203-01 17 73636276 73636276 C T SMIM5 5'UTR 0.29 TCGA-BH-A203-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.46 tolerated(0.13) possibly_damaging(0.631) TCGA-BH-A203-01 17 78358925 78358925 A G RNF213 Silent p.Q4803Q 0.31 TCGA-BH-A203-01 17 80047261 80047261 C A FASN Splice_Site p.X656_splice 0.21 TCGA-BH-A203-01 19 35504242 35504242 A C GRAMD1A Missense_Mutation p.Y230S 0.09 tolerated(0.07) benign(0.183) TCGA-BH-A203-01 19 4175708 4175708 G A SIRT6 Missense_Mutation p.R195W 0.25 deleterious(0) probably_damaging(0.965) TCGA-BH-A203-01 19 47588375 47588375 G A ZC3H4 Nonsense_Mutation p.R349* 0.08 TCGA-BH-A203-01 19 50753006 50753006 C T MYH14 Missense_Mutation p.R528C 0.17 deleterious(0) probably_damaging(0.988) TCGA-BH-A203-01 1 144911944 144911944 G A PDE4DIP Missense_Mutation p.S722F 0.04 deleterious(0.01) possibly_damaging(0.8) TCGA-BH-A203-01 1 152323416 152323416 T C FLG2 Silent p.Q2282Q 0.06 TCGA-BH-A203-01 1 153012521 153012521 G A SPRR2D 3'UTR 0.68 TCGA-BH-A203-01 1 177908860 177908860 G A SEC16B Missense_Mutation p.S727L 0.21 tolerated(0.27) benign(0.003) TCGA-BH-A203-01 1 210948691 210948691 C A KCNH1 Missense_Mutation p.R704M 0.24 deleterious(0) possibly_damaging(0.872) TCGA-BH-A203-01 1 22174305 22174305 G A HSPG2 Silent p.I2634I 0.39 TCGA-BH-A203-01 1 24668645 24668645 C T GRHL3 Missense_Mutation p.S363L 0.34 deleterious(0.02) benign(0.057) TCGA-BH-A203-01 1 248004332 248004332 G C OR11L1 Missense_Mutation p.I289M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BH-A203-01 1 248004656 248004656 G A OR11L1 Silent p.L181L 0.18 TCGA-BH-A203-01 20 31984736 31984736 C A CDK5RAP1 Missense_Mutation p.E45D 0.32 tolerated(0.09) benign(0.004) TCGA-BH-A203-01 20 47251303 47251303 C T PREX1 Missense_Mutation p.R1393Q 0.14 tolerated(0.58) benign(0.091) TCGA-BH-A203-01 20 61143471 61143471 C T C20orf166 5'Flank 0.30 TCGA-BH-A203-01 22 29885829 29885829 G A NEFH Missense_Mutation p.E734K 0.13 deleterious_low_confidence(0.04) probably_damaging(0.956) TCGA-BH-A203-01 22 36907704 36907704 G A EIF3D Silent p.C493C 0.13 TCGA-BH-A203-01 2 121708927 121708927 C T GLI2 Silent p.Y121Y 0.52 TCGA-BH-A203-01 2 166789497 166789497 C A TTC21B Missense_Mutation p.G261W 0.10 deleterious(0) probably_damaging(0.999) TCGA-BH-A203-01 2 178494095 178494095 C T PDE11A 3'UTR 0.35 TCGA-BH-A203-01 2 179436920 179436920 G A TTN Nonsense_Mutation p.R24647* 0.17 TCGA-BH-A203-01 2 55870522 55870522 C T PNPT1 Missense_Mutation p.V649I 0.29 tolerated(0.64) benign(0.015) TCGA-BH-A203-01 2 61719472 61719472 C T XPO1 Missense_Mutation p.E571K 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A203-01 3 10370571 10370571 G A ATP2B2 Missense_Mutation p.T1220M 0.13 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-BH-A203-01 3 145791114 145791114 C T PLOD2 Missense_Mutation p.R568H 0.27 deleterious(0.05) benign(0.003) TCGA-BH-A203-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.55 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A203-01 3 197659062 197659062 G A IQCG Silent p.F209F 0.67 TCGA-BH-A203-01 3 25833460 25833460 C A OXSM Missense_Mutation p.P317T 0.35 deleterious(0) probably_damaging(0.978) TCGA-BH-A203-01 4 36115810 36115810 T C ARAP2 Missense_Mutation p.I1380V 0.19 deleterious(0.03) benign(0.11) TCGA-BH-A203-01 4 37592672 37592672 G C C4orf19 3'UTR 0.39 TCGA-BH-A203-01 4 40144366 40144366 A T N4BP2 Missense_Mutation p.D1620V 0.27 deleterious(0) probably_damaging(0.977) TCGA-BH-A203-01 4 54915207 54915207 T - CHIC2 Frame_Shift_Del p.N82Mfs*16 0.25 TCGA-BH-A203-01 4 88904029 88904029 C T SPP1 Missense_Mutation p.A309V 0.29 tolerated(0.05) probably_damaging(0.95) TCGA-BH-A203-01 5 36255626 36255626 A T RANBP3L Missense_Mutation p.L349M 0.08 deleterious(0) probably_damaging(1) TCGA-BH-A203-01 5 53182436 53182436 C T ARL15 Silent p.L190L 0.24 TCGA-BH-A203-01 6 109884865 109884865 C T AK9 Missense_Mutation p.E896K 0.06 deleterious(0) possibly_damaging(0.557) TCGA-BH-A203-01 6 56765375 56765375 C T DST Silent p.A87A 0.11 TCGA-BH-A203-01 6 71004156 71004156 G C COL9A1 Missense_Mutation p.S137C 0.33 unknown(0) TCGA-BH-A203-01 6 74346398 74346398 G C SLC17A5 Missense_Mutation p.L216V 0.25 tolerated(0.21) benign(0.361) TCGA-BH-A203-01 7 107820770 107820770 C T NRCAM Silent p.P916P 0.17 TCGA-BH-A203-01 7 148895716 148895716 G A ZNF282 Missense_Mutation p.V153M 0.32 deleterious(0.04) benign(0.355) TCGA-BH-A203-01 7 30544233 30544233 G A GGCT Silent p.I31I 0.21 TCGA-BH-A203-01 7 42005234 42005234 A C GLI3 Missense_Mutation p.L1146R 0.32 deleterious(0.04) benign(0.323) TCGA-BH-A203-01 7 55499034 55499034 A G LANCL2 3'UTR 0.22 TCGA-BH-A203-01 8 107782406 107782406 C T ABRA Missense_Mutation p.E5K 0.92 deleterious_low_confidence(0.02) benign(0.024) TCGA-BH-A203-01 8 22084434 22084434 C T PHYHIP Silent p.T90T 0.11 TCGA-BH-A203-01 8 37917514 37917514 C G EIF4EBP1 3'UTR 0.08 TCGA-BH-A203-01 8 37917587 37917587 C G EIF4EBP1 3'UTR 0.09 TCGA-BH-A203-01 9 100194375 100194375 C G TDRD7 Missense_Mutation p.P140A 0.11 tolerated(0.33) benign(0.016) TCGA-BH-A203-01 9 116858679 116858679 G A KIF12 Silent p.I104I 0.19 TCGA-BH-A203-01 9 123935683 123935683 G A CNTRL Missense_Mutation p.E2194K 0.19 benign(0.005) TCGA-BH-A203-01 9 128064405 128064405 T C GAPVD1 Missense_Mutation p.I110T 0.12 tolerated(0.09) benign(0.036) TCGA-BH-A203-01 9 130656839 130656839 G C ST6GALNAC6 Silent p.L83L 0.29 TCGA-BH-A203-01 X 100662776 100662776 G A GLA Missense_Mutation p.T39M 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-BH-A203-01 X 101627913 101627913 C G NXF2B Intron 0.11 TCGA-BH-A203-01 X 101912271 101912271 T G GPRASP1 Missense_Mutation p.C1144G 0.28 deleterious(0) probably_damaging(1) TCGA-BH-A203-01 X 103358793 103358793 G A ZCCHC18 5'UTR 0.14 TCGA-BH-A203-01 X 103359710 103359710 C T ZCCHC18 Missense_Mutation p.P303L 0.07 tolerated(0.18) benign(0.006) TCGA-BH-A203-01 X 105970476 105970476 C T RNF128 Silent p.T111T 0.18 TCGA-BH-A203-01 X 130411977 130411977 G T IGSF1 Missense_Mutation p.Q730K 0.30 tolerated(0.36) benign(0.047) TCGA-BH-A203-01 X 153282465 153282465 A T IRAK1 Silent p.G321G 0.14 TCGA-BH-A203-01 X 153592952 153592952 C T FLNA Missense_Mutation p.R655H 0.16 deleterious(0.02) possibly_damaging(0.711) TCGA-BH-A203-01 X 154124475 154124475 G A F8 Silent p.G2102G 0.10 TCGA-BH-A203-01 X 54567799 54567799 C T GNL3L Missense_Mutation p.R95C 0.16 deleterious(0.02) benign(0.001) TCGA-BH-A203-01 X 55116977 55116977 C T PAGE2 Missense_Mutation p.P43S 0.06 tolerated(0.09) probably_damaging(0.999) TCGA-BH-A203-01 X 63410049 63410049 C T AMER1 Missense_Mutation p.A1040T 0.31 tolerated(0.24) benign(0.011) TCGA-BH-A203-01 X 66766554 66766554 C T AR Silent p.S522S 0.25 TCGA-BH-A204-01 10 101823406 101823406 A G CPN1 Missense_Mutation p.I279T 0.28 tolerated(0.15) probably_damaging(0.998) TCGA-BH-A204-01 11 103058085 103058085 G A DYNC2H1 Missense_Mutation p.A2304T 0.35 benign(0.03) TCGA-BH-A204-01 11 103091479 103091479 G T DYNC2H1 Missense_Mutation p.G3025V 0.45 probably_damaging(0.999) TCGA-BH-A204-01 11 103908332 103908332 C T DDI1 Missense_Mutation p.S261L 0.47 deleterious(0) probably_damaging(0.996) TCGA-BH-A204-01 12 102045070 102045070 C T MYBPC1 Silent p.I450I 0.36 TCGA-BH-A204-01 14 23503966 23503975 GCCAGGCTCA - PSMB5 Frame_Shift_Del p.L39Pfs*31 0.24 TCGA-BH-A204-01 14 37641556 37641556 C G SLC25A21-AS1 5'UTR 0.30 TCGA-BH-A204-01 15 30024679 30024679 C A TJP1 Nonsense_Mutation p.E659* 0.44 TCGA-BH-A204-01 15 59186732 59186732 C T SLTM Missense_Mutation p.C426Y 0.38 deleterious(0.01) unknown(0) TCGA-BH-A204-01 15 60760323 60760323 G A NARG2 Silent p.Y115Y 0.40 TCGA-BH-A204-01 16 88494721 88494721 T A ZNF469 Missense_Mutation p.H281Q 0.75 possibly_damaging(0.86) TCGA-BH-A204-01 17 12016616 12016616 G T MAP2K4 Missense_Mutation p.S251I 0.30 deleterious(0) probably_damaging(1) TCGA-BH-A204-01 17 37681094 37681094 A T CDK12 Missense_Mutation p.Q1088L 0.41 benign(0.146) TCGA-BH-A204-01 17 37681103 37681103 C T CDK12 Missense_Mutation p.P1091L 0.40 benign(0.392) TCGA-BH-A204-01 17 55197673 55197673 C T AKAP1 Silent p.Y900Y 0.38 TCGA-BH-A204-01 19 10225692 10225692 G C P2RY11 3'UTR 0.21 TCGA-BH-A204-01 19 2353046 2353046 C G LLfos-48D6.1 Intron 0.28 TCGA-BH-A204-01 19 44980904 44980904 A T ZNF180 Silent p.T598T 0.54 TCGA-BH-A204-01 19 50183820 50183820 C G PRMT1 Missense_Mutation p.S56C 0.55 deleterious(0) possibly_damaging(0.806) TCGA-BH-A204-01 1 16202935 16202936 - TA SPEN Frame_Shift_Ins p.H216Yfs*151 0.42 TCGA-BH-A204-01 1 16921107 16921107 T C NBPF1 5'UTR 0.40 TCGA-BH-A204-01 1 207930364 207930364 T G CD46 Missense_Mutation p.C35G 0.46 deleterious(0) probably_damaging(0.998) TCGA-BH-A204-01 1 222849466 222849466 G A AIDA Silent p.I185I 0.47 TCGA-BH-A204-01 1 43317408 43317408 A G ZNF691 Missense_Mutation p.H291R 0.88 tolerated(0.38) possibly_damaging(0.744) TCGA-BH-A204-01 1 67390648 67390648 G A MIER1 5'UTR 0.68 TCGA-BH-A204-01 1 8617573 8617573 C T RERE Missense_Mutation p.D178N 0.80 probably_damaging(0.985) TCGA-BH-A204-01 20 45173985 45173985 G A OCSTAMP Missense_Mutation p.T343M 0.37 deleterious(0.04) probably_damaging(1) TCGA-BH-A204-01 20 62129172 62129172 G A EEF1A2 5'UTR 0.54 TCGA-BH-A204-01 2 165378582 165378582 G A GRB14 Missense_Mutation p.H242Y 0.43 tolerated(0.17) benign(0.024) TCGA-BH-A204-01 2 191827682 191827682 C T GLS Silent p.T660T 0.37 TCGA-BH-A204-01 2 73118774 73118774 G C SPR 3'UTR 0.32 TCGA-BH-A204-01 3 121350689 121350689 C A HCLS1 3'UTR 0.69 TCGA-BH-A204-01 3 12856688 12856688 G A CAND2 Missense_Mutation p.R352H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BH-A204-01 3 46759116 46759116 C T PRSS50 Missense_Mutation p.A40T 0.39 tolerated(0.23) benign(0.009) TCGA-BH-A204-01 3 51673686 51673686 G A RAD54L2 Nonsense_Mutation p.W704* 0.50 TCGA-BH-A204-01 3 52290495 52290495 C A WDR82 3'UTR 0.50 TCGA-BH-A204-01 4 100261755 100261755 G A ADH1C Missense_Mutation p.T314M 0.39 probably_damaging(0.951) TCGA-BH-A204-01 4 122743762 122743762 C A CCNA2 Missense_Mutation p.V85F 0.40 tolerated(0.75) benign(0.002) TCGA-BH-A204-01 4 54880282 54880282 C T CHIC2 Missense_Mutation p.R112Q 0.42 tolerated(0.3) probably_damaging(0.912) TCGA-BH-A204-01 5 159854736 159854736 G A PTTG1 Missense_Mutation p.D129N 0.41 deleterious(0.03) benign(0.163) TCGA-BH-A204-01 6 155575408 155575408 C A TIAM2 Intron 0.43 TCGA-BH-A204-01 6 31686778 31686778 G A LY6G6C 3'UTR 0.50 TCGA-BH-A204-01 6 39507794 39507794 G A KIF6 Missense_Mutation p.L544F 0.39 tolerated(0.12) benign(0.009) TCGA-BH-A204-01 7 41729517 41729517 A T INHBA Missense_Mutation p.W338R 0.32 deleterious(0) probably_damaging(1) TCGA-BH-A204-01 7 6542661 6542661 C T GRID2IP Missense_Mutation p.R1014Q 0.50 tolerated(0.12) benign(0.092) TCGA-BH-A204-01 8 104342280 104342280 C T FZD6 Missense_Mutation p.R647W 0.26 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-BH-A204-01 8 86572323 86572323 T C REXO1L1P 3'UTR 0.13 TCGA-BH-A204-01 9 101822233 101822233 C A COL15A1 Missense_Mutation p.L1134M 0.45 tolerated(0.09) probably_damaging(0.998) TCGA-BH-A204-01 9 139972912 139972912 G T UAP1L1 Intron 0.59 TCGA-BH-A204-01 X 106221352 106221352 G T MORC4 Missense_Mutation p.N338K 0.40 deleterious(0) possibly_damaging(0.78) TCGA-BH-A204-01 X 134156443 134156443 A C FAM127C Missense_Mutation p.L16R 0.21 tolerated(0.33) benign(0.001) TCGA-BH-A204-01 X 152858123 152858123 A G FAM58A Silent p.V164V 0.33 TCGA-BH-A204-01 X 47429359 47429359 G A ARAF Missense_Mutation p.G496E 0.43 deleterious(0) probably_damaging(1) TCGA-BH-A204-01 X 74273323 74273323 T C ABCB7 Missense_Mutation p.N715S 0.34 tolerated(0.35) benign(0.003) TCGA-BH-A208-01 10 70152941 70152941 T C RUFY2 Missense_Mutation p.I237V 0.17 tolerated(0.69) benign(0.253) TCGA-BH-A208-01 10 98087355 98087355 G C DNTT Silent p.R335R 0.13 TCGA-BH-A208-01 11 1093180 1093180 C G MUC2 Missense_Mutation p.P1667A 0.04 unknown(0) TCGA-BH-A208-01 11 111597590 111597590 G C SIK2 3'UTR 0.32 TCGA-BH-A208-01 11 126391325 126391325 C T KIRREL3 Silent p.L106L 0.23 TCGA-BH-A208-01 11 3111890 3111890 C T OSBPL5 Missense_Mutation p.D766N 0.40 deleterious(0.03) possibly_damaging(0.796) TCGA-BH-A208-01 11 46400561 46400561 T G DGKZ Silent p.A1001A 0.31 TCGA-BH-A208-01 11 63487595 63487595 G C RTN3 Missense_Mutation p.E541Q 0.19 deleterious(0.02) possibly_damaging(0.489) TCGA-BH-A208-01 11 89420578 89420578 C T FOLH1B RNA 0.36 TCGA-BH-A208-01 11 89935538 89935538 G A CHORDC1 3'UTR 0.08 TCGA-BH-A208-01 12 10137481 10137481 C T CLEC12A Silent p.N228N 0.22 TCGA-BH-A208-01 12 132423786 132423786 C T PUS1 Silent p.I170I 0.41 TCGA-BH-A208-01 12 29649525 29649525 A G OVCH1 Silent p.S49S 0.30 TCGA-BH-A208-01 12 58018733 58018733 G T SLC26A10 Nonsense_Mutation p.E438* 0.33 TCGA-BH-A208-01 13 109753162 109753162 G T MYO16 Missense_Mutation p.R1100L 0.18 tolerated(0.12) benign(0.06) TCGA-BH-A208-01 13 33281097 33281097 C T PDS5B Missense_Mutation p.S628L 0.21 tolerated(0.07) benign(0.054) TCGA-BH-A208-01 14 105859591 105859591 G A PACS2 Missense_Mutation p.D839N 0.08 deleterious(0.04) benign(0.423) TCGA-BH-A208-01 14 22789094 22789094 G A TRAV41 Missense_Mutation p.D103N 0.61 deleterious(0.02) possibly_damaging(0.538) TCGA-BH-A208-01 15 43814535 43814535 C A MAP1A Missense_Mutation p.F288L 0.21 probably_damaging(0.994) TCGA-BH-A208-01 15 51024862 51024862 C T SPPL2A Missense_Mutation p.D318N 0.24 deleterious(0.05) possibly_damaging(0.601) TCGA-BH-A208-01 15 76248286 76248286 G A NRG4 Silent p.T106T 0.07 TCGA-BH-A208-01 16 30778177 30778177 T A RNF40 Missense_Mutation p.L470Q 0.15 deleterious(0.05) possibly_damaging(0.635) TCGA-BH-A208-01 16 56666638 56666638 C T MT1M 5'UTR 0.23 TCGA-BH-A208-01 16 7645613 7645613 C T RBFOX1 Silent p.H197H 0.26 TCGA-BH-A208-01 16 85936652 85936652 C T IRF8 Nonsense_Mutation p.R11* 0.34 TCGA-BH-A208-01 17 30781593 30781593 C G PSMD11 Missense_Mutation p.L92V 0.52 deleterious(0.05) possibly_damaging(0.527) TCGA-BH-A208-01 17 61957656 61957656 G A GH2 3'UTR 0.16 TCGA-BH-A208-01 17 7578290 7578290 C G TP53 Splice_Site p.X187_splice 0.22 TCGA-BH-A208-01 18 12985311 12985311 G A SEH1L Intron 0.15 TCGA-BH-A208-01 19 11728555 11728555 C G ZNF627 Missense_Mutation p.H413D 0.17 deleterious(0) probably_damaging(0.995) TCGA-BH-A208-01 19 41510050 41510050 C G CYP2B6 Missense_Mutation p.P106A 0.23 tolerated(0.56) benign(0.006) TCGA-BH-A208-01 19 44055732 44055732 G A XRCC1 Missense_Mutation p.P397L 0.18 deleterious(0) probably_damaging(0.941) TCGA-BH-A208-01 19 49632143 49632143 C T PPFIA3 Silent p.H127H 0.29 TCGA-BH-A208-01 19 51958011 51958011 C G SIGLEC8 Missense_Mutation p.V359L 0.17 tolerated(0.14) benign(0.017) TCGA-BH-A208-01 1 114640405 114640405 G A SYT6 Missense_Mutation p.R402W 0.12 deleterious(0) probably_damaging(0.998) TCGA-BH-A208-01 1 155264389 155264389 G A PKLR Silent p.V283V 0.40 TCGA-BH-A208-01 1 155264392 155264392 G A PKLR Silent p.I282I 0.40 TCGA-BH-A208-01 1 196654268 196654268 G A CFH Missense_Mutation p.E289K 0.50 tolerated(0.39) benign(0.21) TCGA-BH-A208-01 1 201859608 201859608 C G SHISA4 Nonsense_Mutation p.S91* 0.15 TCGA-BH-A208-01 1 206331149 206331149 G A CTSE Silent p.G385G 0.19 TCGA-BH-A208-01 1 207648485 207648485 C G CR2 Missense_Mutation p.I880M 0.22 tolerated(0.1) possibly_damaging(0.861) TCGA-BH-A208-01 1 26162259 26162259 G A AUNIP Missense_Mutation p.A100V 0.17 tolerated(0.33) benign(0) TCGA-BH-A208-01 1 32793146 32793146 G A HDAC1 Silent p.Q168Q 0.27 TCGA-BH-A208-01 1 34002643 34002643 C G CSMD2 Missense_Mutation p.Q3142H 0.24 tolerated(0.12) probably_damaging(0.996) TCGA-BH-A208-01 1 48918720 48918720 T - SPATA6 Frame_Shift_Del p.Q45Hfs*25 0.16 TCGA-BH-A208-01 1 67371056 67371056 T C WDR78 Missense_Mutation p.N58S 0.22 tolerated_low_confidence(0.96) benign(0.001) TCGA-BH-A208-01 1 8421432 8421432 G T RERE Missense_Mutation p.S712Y 0.30 probably_damaging(0.997) TCGA-BH-A208-01 20 17446160 17446160 G C PCSK2 Missense_Mutation p.E464D 0.41 tolerated(0.06) benign(0.345) TCGA-BH-A208-01 20 31890728 31890728 G A BPIFB1 Missense_Mutation p.D330N 0.16 tolerated(0.82) benign(0.003) TCGA-BH-A208-01 22 29193085 29193087 CAG - XBP1 In_Frame_Del p.A144del 0.16 TCGA-BH-A208-01 2 10829958 10829958 C G NOL10 Missense_Mutation p.K10N 0.25 deleterious(0) possibly_damaging(0.882) TCGA-BH-A208-01 2 11911646 11911646 C T LPIN1 Missense_Mutation p.P195L 0.27 tolerated(0.36) benign(0.001) TCGA-BH-A208-01 2 141819658 141819658 G A LRP1B Nonsense_Mutation p.Q400* 0.14 TCGA-BH-A208-01 2 152220468 152220468 G A TNFAIP6 Missense_Mutation p.G36S 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A208-01 2 234746179 234746179 C T HJURP 3'UTR 0.13 TCGA-BH-A208-01 2 73717343 73717343 C G ALMS1 Missense_Mutation p.H2752D 0.21 possibly_damaging(0.595) TCGA-BH-A208-01 2 73717959 73717959 C T ALMS1 Missense_Mutation p.S2957L 0.23 benign(0.015) TCGA-BH-A208-01 2 73718057 73718057 C T ALMS1 Nonsense_Mutation p.Q2990* 0.32 TCGA-BH-A208-01 2 86434315 86434315 C T MRPL35 Silent p.P81P 0.40 TCGA-BH-A208-01 3 128758648 128758648 C G EFCC1 Missense_Mutation p.S585C 0.35 deleterious(0.03) benign(0.023) TCGA-BH-A208-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.49 tolerated(0.11) possibly_damaging(0.529) TCGA-BH-A208-01 3 197678141 197678141 C T RPL35A Silent p.F41F 0.14 TCGA-BH-A208-01 3 58154337 58154337 G A FLNB Missense_Mutation p.G2488S 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-BH-A208-01 4 111474542 111474542 C T ENPEP Missense_Mutation p.S858L 0.34 deleterious(0) probably_damaging(0.955) TCGA-BH-A208-01 5 135692820 135692820 C T TRPC7 Missense_Mutation p.V86M 0.38 deleterious(0) probably_damaging(0.998) TCGA-BH-A208-01 5 14610360 14610360 G A FAM105A Silent p.R336R 0.16 TCGA-BH-A208-01 6 152558036 152558036 C T SYNE1 Silent p.L6705L 0.17 TCGA-BH-A208-01 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-BH-A208-01 7 143002266 143002266 C T CASP2 3'UTR 0.20 TCGA-BH-A208-01 7 150840935 150840935 G A AGAP3 Missense_Mutation p.G881R 0.36 tolerated(0.23) benign(0.345) TCGA-BH-A208-01 7 48018139 48018139 C T HUS1 Missense_Mutation p.E78K 0.23 deleterious(0.01) possibly_damaging(0.604) TCGA-BH-A208-01 7 99696897 99696897 C T MCM7 Intron 0.17 TCGA-BH-A208-01 8 37633453 37633453 G A PROSC Silent p.R205R 0.37 TCGA-BH-A208-01 8 67740896 67740896 C G SGK3 Missense_Mutation p.S142C 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-BH-A208-01 8 70550877 70550877 C T SULF1 Nonsense_Mutation p.Q809* 0.18 TCGA-BH-A208-01 9 135202179 135202179 C G SETX Missense_Mutation p.K1602N 0.12 tolerated(0.16) benign(0.007) TCGA-BH-A208-01 9 140142176 140142176 C G FAM166A 5'UTR 0.17 TCGA-BH-A208-01 X 100880821 100880821 A G ARMCX3 Silent p.Q284Q 0.16 TCGA-BH-A208-01 X 110035325 110035325 G C CHRDL1 Missense_Mutation p.Q29E 0.17 tolerated(1) benign(0.004) TCGA-BH-A208-01 X 1755428 1755428 G C ASMT Missense_Mutation p.E295D 0.20 tolerated(0.59) benign(0.089) TCGA-BH-A208-01 X 46696579 46696579 C G RP2 Missense_Mutation p.S15W 0.15 deleterious(0.01) benign(0.404) TCGA-BH-A208-01 X 69652976 69652976 G T GDPD2 3'UTR 0.22 TCGA-BH-A208-01 X 75651058 75651058 T C MAGEE1 Missense_Mutation p.M912T 0.15 deleterious(0.01) probably_damaging(0.977) TCGA-BH-A208-01 X 83724462 83724462 C G HDX Missense_Mutation p.R90P 0.19 tolerated(0.27) benign(0) TCGA-BH-A209-01 10 48413859 48413859 C T GDF2 Missense_Mutation p.E337K 0.16 tolerated(1) benign(0.004) TCGA-BH-A209-01 10 5247744 5247744 G C AKR1C4 Missense_Mutation p.D132H 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A209-01 10 60936599 60936599 G C PHYHIPL 5'UTR 0.18 TCGA-BH-A209-01 10 99141478 99141478 G A RRP12 Silent p.S438S 0.21 TCGA-BH-A209-01 11 119998060 119998060 G A TRIM29 Missense_Mutation p.S373F 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-BH-A209-01 11 2869197 2869197 G C KCNQ1 Silent p.L665L 0.38 TCGA-BH-A209-01 11 4869758 4869758 C T OR51S1 Silent p.L227L 0.19 TCGA-BH-A209-01 11 60229921 60229921 C G MS4A1 Missense_Mutation p.S25C 0.16 deleterious(0.02) benign(0.012) TCGA-BH-A209-01 11 62294670 62294670 C G AHNAK Missense_Mutation p.D2407H 0.12 benign(0.254) TCGA-BH-A209-01 11 67925331 67925331 C T SUV420H1 Missense_Mutation p.D828N 0.30 tolerated(0.05) benign(0.06) TCGA-BH-A209-01 12 112583428 112583428 G A TRAFD1 Missense_Mutation p.E297K 0.14 deleterious(0) possibly_damaging(0.623) TCGA-BH-A209-01 12 13061918 13061918 C T GPRC5A Silent p.L245L 0.23 TCGA-BH-A209-01 12 48374414 48374414 C G COL2A1 Missense_Mutation p.E850Q 0.25 unknown(0) TCGA-BH-A209-01 13 113505471 113505471 G C ATP11A Missense_Mutation p.E644Q 0.14 tolerated(0.25) benign(0.038) TCGA-BH-A209-01 13 33092110 33092110 C G N4BP2L2 Missense_Mutation p.K98N 0.12 deleterious(0) probably_damaging(0.961) TCGA-BH-A209-01 14 102800966 102800966 G A ZNF839 Missense_Mutation p.E498K 0.05 deleterious(0) probably_damaging(0.994) TCGA-BH-A209-01 14 21215831 21215831 G A EDDM3A Missense_Mutation p.R31K 0.12 tolerated(0.34) benign(0.025) TCGA-BH-A209-01 14 51560947 51560947 G A TRIM9 Silent p.H237H 0.16 TCGA-BH-A209-01 14 62536478 62536478 C G SYT16 Missense_Mutation p.F227L 0.11 tolerated(0.36) benign(0.002) TCGA-BH-A209-01 14 70883740 70883740 G T SYNJ2BP 5'UTR 0.24 TCGA-BH-A209-01 14 93125804 93125804 C T RIN3 Silent p.L775L 0.33 TCGA-BH-A209-01 15 30659709 30659709 A G CHRFAM7A Missense_Mutation p.M211T 0.14 deleterious(0) probably_damaging(0.985) TCGA-BH-A209-01 15 33833010 33833010 G A RYR3 Missense_Mutation p.G189S 0.20 benign(0.248) TCGA-BH-A209-01 15 35082524 35082524 G C ACTC1 3'UTR 0.21 TCGA-BH-A209-01 15 54306457 54306457 G C UNC13C Missense_Mutation p.D453H 0.19 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-BH-A209-01 15 89872184 89872184 C T POLG Missense_Mutation p.R338K 0.14 tolerated(1) benign(0.001) TCGA-BH-A209-01 15 94927324 94927324 C A MCTP2 Silent p.L552L 0.19 TCGA-BH-A209-01 16 1500621 1500621 G A CLCN7 Silent p.F498F 0.24 TCGA-BH-A209-01 16 23722312 23722312 G A ERN2 Silent p.L89L 0.27 TCGA-BH-A209-01 16 24578496 24578496 G C RBBP6 Missense_Mutation p.R541T 0.32 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BH-A209-01 16 30721315 30721315 G A SRCAP Missense_Mutation p.E334K 0.13 unknown(0) TCGA-BH-A209-01 16 56782199 56782199 G A NUP93 Missense_Mutation p.E14K 0.17 deleterious(0.05) benign(0.129) TCGA-BH-A209-01 16 68835596 68835596 C T CDH1 Nonsense_Mutation p.R63* 0.25 TCGA-BH-A209-01 16 69390744 69390744 C A TERF2 3'UTR 0.09 TCGA-BH-A209-01 17 17248229 17248229 G A NT5M Intron 0.38 TCGA-BH-A209-01 17 38950184 38950184 C T KRT28 Missense_Mutation p.E365K 0.18 deleterious(0.01) benign(0.44) TCGA-BH-A209-01 17 42330736 42330736 C T SLC4A1 Silent p.L687L 0.20 TCGA-BH-A209-01 17 48600466 48600466 G A MYCBPAP Missense_Mutation p.R518Q 0.11 tolerated(0.37) benign(0.099) TCGA-BH-A209-01 17 49083456 49083456 C G SPAG9 Missense_Mutation p.E472Q 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-BH-A209-01 17 49083547 49083547 C G SPAG9 Silent p.L441L 0.13 TCGA-BH-A209-01 17 56770065 56770065 C T RAD51C Missense_Mutation p.P21S 0.19 tolerated(0.16) benign(0.031) TCGA-BH-A209-01 17 74276111 74276111 C T QRICH2 Intron 0.50 TCGA-BH-A209-01 19 12774587 12774587 C T MAN2B1 Silent p.Q231Q 0.17 TCGA-BH-A209-01 19 14736396 14736396 G C EMR3 Missense_Mutation p.Q610E 0.13 deleterious(0.05) benign(0.018) TCGA-BH-A209-01 19 33422269 33422269 G - CEP89 Intron 0.32 TCGA-BH-A209-01 19 9061450 9061450 C T MUC16 Missense_Mutation p.D8666N 0.05 unknown(0) TCGA-BH-A209-01 19 9084142 9084142 G A MUC16 Missense_Mutation p.S2558L 0.25 unknown(0) TCGA-BH-A209-01 19 9086173 9086173 G A MUC16 Missense_Mutation p.T1881I 0.23 unknown(0) TCGA-BH-A209-01 19 9088599 9088599 G C MUC16 Silent p.T1072T 0.31 TCGA-BH-A209-01 19 9089329 9089329 G A MUC16 Missense_Mutation p.S829L 0.20 unknown(0) TCGA-BH-A209-01 19 9089347 9089347 G C MUC16 Missense_Mutation p.P823R 0.20 unknown(0) TCGA-BH-A209-01 19 9089752 9089752 G C MUC16 Nonsense_Mutation p.S688* 0.11 TCGA-BH-A209-01 19 9089767 9089767 G C MUC16 Nonsense_Mutation p.S683* 0.10 TCGA-BH-A209-01 19 9090384 9090384 G A MUC16 Silent p.S477S 0.27 TCGA-BH-A209-01 1 151219428 151219428 C T PIP5K1A Missense_Mutation p.S558L 0.32 deleterious_low_confidence(0) benign(0.149) TCGA-BH-A209-01 1 171553562 171553562 G C PRRC2C Missense_Mutation p.R2547T 0.27 probably_damaging(0.99) TCGA-BH-A209-01 1 172558069 172558069 G C SUCO Missense_Mutation p.E610Q 0.17 tolerated(0.11) benign(0.137) TCGA-BH-A209-01 1 202719891 202719891 G A KDM5B Nonsense_Mutation p.Q573* 0.09 TCGA-BH-A209-01 1 205568336 205568336 C G MFSD4 Missense_Mutation p.I482M 0.09 tolerated(0.23) benign(0.322) TCGA-BH-A209-01 1 206611447 206611447 C A SRGAP2 Silent p.V503V 0.43 TCGA-BH-A209-01 1 213303216 213303216 C T RPS6KC1 Silent p.L273L 0.17 TCGA-BH-A209-01 1 247464393 247464393 C T ZNF496 Missense_Mutation p.E398K 0.25 tolerated(0.27) benign(0.011) TCGA-BH-A209-01 1 44476555 44476555 C T SLC6A9 Splice_Site p.X84_splice 0.32 TCGA-BH-A209-01 1 67855809 67855809 G A IL12RB2 Missense_Mutation p.E682K 0.16 deleterious(0.03) benign(0.05) TCGA-BH-A209-01 1 85488012 85488012 G C MCOLN3 Missense_Mutation p.I389M 0.12 deleterious(0.02) benign(0.37) TCGA-BH-A209-01 20 49493156 49493156 C G BCAS4 3'UTR 0.25 TCGA-BH-A209-01 20 76927 76927 G C DEFB125 Missense_Mutation p.E114Q 0.17 tolerated(0.16) benign(0.004) TCGA-BH-A209-01 21 34876575 34876575 C T GART Silent p.V963V 0.13 TCGA-BH-A209-01 22 23627293 23627293 G C BCR Missense_Mutation p.E771Q 0.40 deleterious(0.04) probably_damaging(0.913) TCGA-BH-A209-01 22 24829519 24829519 G A ADORA2A Silent p.A49A 0.24 TCGA-BH-A209-01 2 108608600 108608600 G A SLC5A7 Missense_Mutation p.E73K 0.18 deleterious(0) probably_damaging(0.98) TCGA-BH-A209-01 2 136567514 136567514 G A LCT Silent p.L801L 0.28 TCGA-BH-A209-01 2 173335724 173335724 G C ITGA6 Missense_Mutation p.K222N 0.24 tolerated(0.37) benign(0.034) TCGA-BH-A209-01 2 183641874 183641874 A T DNAJC10 3'UTR 0.21 TCGA-BH-A209-01 2 210558653 210558653 G C MAP2 Missense_Mutation p.E587Q 0.35 tolerated_low_confidence(1) benign(0.004) TCGA-BH-A209-01 2 27355593 27355593 C T PREB Silent p.L210L 0.17 TCGA-BH-A209-01 2 54028744 54028744 C G ERLEC1 Missense_Mutation p.H246D 0.22 deleterious(0.01) probably_damaging(0.916) TCGA-BH-A209-01 2 85604484 85604484 G C ELMOD3 Missense_Mutation p.D209H 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A209-01 2 85766380 85766380 C T MAT2A 5'UTR 0.25 TCGA-BH-A209-01 2 96798372 96798372 G A ASTL Missense_Mutation p.H182Y 0.24 deleterious(0) probably_damaging(1) TCGA-BH-A209-01 3 101371771 101371772 - T ZBTB11 Frame_Shift_Ins p.S774Kfs*4 0.32 TCGA-BH-A209-01 3 111632520 111632520 G C PHLDB2 Missense_Mutation p.E564Q 0.10 deleterious(0.05) possibly_damaging(0.887) TCGA-BH-A209-01 3 124952376 124952379 CTTA - ZNF148 Frame_Shift_Del p.S397Rfs*4 0.39 TCGA-BH-A209-01 3 1415621 1415621 C G CNTN6 Silent p.L653L 0.22 TCGA-BH-A209-01 3 196786826 196786826 C G DLG1 Missense_Mutation p.R839T 0.23 deleterious(0) probably_damaging(1) TCGA-BH-A209-01 3 32493950 32493950 G A CMTM7 Missense_Mutation p.V167I 0.28 tolerated(0.82) benign(0.005) TCGA-BH-A209-01 3 69171352 69171352 C T LMOD3 Silent p.P62P 0.21 TCGA-BH-A209-01 4 122749218 122749218 C G BBS7 Intron 0.42 TCGA-BH-A209-01 4 140811855 140811855 C G MAML3 Missense_Mutation p.K245N 0.13 possibly_damaging(0.776) TCGA-BH-A209-01 4 140811926 140811926 C G MAML3 Missense_Mutation p.D222H 0.08 probably_damaging(0.999) TCGA-BH-A209-01 4 49032952 49032952 C T CWH43 Missense_Mutation p.P495S 0.18 deleterious(0.03) possibly_damaging(0.668) TCGA-BH-A209-01 4 76678689 76678689 A T USO1 Silent p.L84L 0.08 TCGA-BH-A209-01 4 83857213 83857213 C G LIN54 Missense_Mutation p.G589A 0.22 deleterious(0) probably_damaging(0.999) TCGA-BH-A209-01 4 88046286 88046286 C G AFF1 Missense_Mutation p.S855C 0.17 deleterious(0.04) unknown(0) TCGA-BH-A209-01 4 9784798 9784798 C T DRD5 Missense_Mutation p.T382M 0.15 deleterious(0) possibly_damaging(0.886) TCGA-BH-A209-01 5 169805861 169805861 C T KCNMB1 Silent p.G141G 0.15 TCGA-BH-A209-01 5 80946149 80946149 G C SSBP2 Silent p.L24L 0.29 TCGA-BH-A209-01 6 160958987 160958987 G A LPA Silent p.A1914A 0.08 TCGA-BH-A209-01 6 166571842 166571842 G C T Silent p.L423L 0.21 TCGA-BH-A209-01 6 28542837 28542837 C G SCAND3 Missense_Mutation p.E549Q 0.20 tolerated_low_confidence(0.11) benign(0.095) TCGA-BH-A209-01 6 74078541 74078541 G A OOEP Missense_Mutation p.S139L 0.12 tolerated(0.09) benign(0.086) TCGA-BH-A209-01 6 93965558 93965558 G C EPHA7 Silent p.V790V 0.17 TCGA-BH-A209-01 7 12610542 12610542 G A SCIN Missense_Mutation p.D44N 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A209-01 7 134819891 134819891 G C AGBL3 Missense_Mutation p.E881Q 0.21 deleterious_low_confidence(0.01) benign(0.128) TCGA-BH-A209-01 7 141463992 141463992 C T TAS2R3 Silent p.L12L 0.28 TCGA-BH-A209-01 7 21750285 21750285 G T DNAH11 Missense_Mutation p.W2273C 0.20 probably_damaging(0.997) TCGA-BH-A209-01 7 29132248 29132248 T A CPVL Missense_Mutation p.D178V 0.10 deleterious(0) probably_damaging(0.951) TCGA-BH-A209-01 7 51096585 51096585 C T COBL Silent p.L736L 0.23 TCGA-BH-A209-01 7 8099783 8099784 TC - GLCCI1 Frame_Shift_Del p.S291Cfs*14 0.11 TCGA-BH-A209-01 8 141415752 141415752 A T TRAPPC9 Missense_Mutation p.I409N 0.19 tolerated(0.07) probably_damaging(0.989) TCGA-BH-A209-01 8 143395802 143395802 C A TSNARE1 Splice_Site p.X359_splice 0.31 TCGA-BH-A209-01 8 143413112 143413112 C G TSNARE1 Intron 0.40 TCGA-BH-A209-01 9 131073254 131073254 C A TRUB2 Silent p.V194V 0.15 TCGA-BH-A209-01 9 134504605 134504605 C G RAPGEF1 Missense_Mutation p.E260D 0.12 tolerated(0.09) possibly_damaging(0.708) TCGA-BH-A209-01 9 85926816 85926816 G A FRMD3 Silent p.I253I 0.11 TCGA-BH-A209-01 9 88293301 88293301 G A AGTPBP1 Missense_Mutation p.L80F 0.12 tolerated(0.71) possibly_damaging(0.602) TCGA-BH-A209-01 9 88967818 88967818 C G ZCCHC6 Missense_Mutation p.K99N 0.14 deleterious_low_confidence(0.04) probably_damaging(0.912) TCGA-BH-A209-01 9 99154720 99154720 G A ZNF367 Nonsense_Mutation p.Q264* 0.09 TCGA-BH-A209-01 9 99160571 99160571 C T ZNF367 Missense_Mutation p.R149K 0.16 tolerated(0.09) probably_damaging(0.996) TCGA-BH-A209-01 X 30671665 30671665 C T GK Missense_Mutation p.S4L 0.26 tolerated(0.14) benign(0.023) TCGA-BH-A209-01 X 48326103 48326103 G C SLC38A5 Missense_Mutation p.F41L 0.35 tolerated(0.08) benign(0.12) TCGA-BH-A209-01 X 49062124 49062124 C T CACNA1F Silent p.S1885S 0.34 TCGA-BH-A209-01 X 71401538 71401538 G A PIN4 5'UTR 0.09 TCGA-BH-A28Q-01 10 8115737 8115749 CCAGACCAGAAAC - GATA3 Frame_Shift_Del p.Q363Efs*38 0.40 TCGA-BH-A28Q-01 10 86018459 86018459 C T RGR 3'UTR 0.33 TCGA-BH-A28Q-01 10 90966611 90966611 G T CH25H Missense_Mutation p.H147N 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A28Q-01 10 99359502 99359502 G A HOGA1 Silent p.L178L 0.16 TCGA-BH-A28Q-01 11 47373015 47373015 C T MYBPC3 Missense_Mutation p.A23T 0.20 tolerated_low_confidence(0.1) benign(0.02) TCGA-BH-A28Q-01 11 57319810 57319810 C A UBE2L6 3'UTR 0.10 TCGA-BH-A28Q-01 11 61977888 61977888 C G SCGB2A1 Missense_Mutation p.S20C 0.20 deleterious(0.02) possibly_damaging(0.7) TCGA-BH-A28Q-01 12 115120616 115120616 C T TBX3 Splice_Site p.X130_splice 0.54 TCGA-BH-A28Q-01 12 12232555 12232555 C G BCL2L14 Missense_Mutation p.Q106E 0.28 tolerated(0.54) benign(0.009) TCGA-BH-A28Q-01 14 100793545 100793545 C T SLC25A47 Silent p.G55G 0.37 TCGA-BH-A28Q-01 14 105695168 105695168 C A BRF1 Silent p.T259T 0.32 TCGA-BH-A28Q-01 14 77767528 77767528 C T POMT2 Missense_Mutation p.G241R 0.41 tolerated(0.08) possibly_damaging(0.665) TCGA-BH-A28Q-01 16 68835780 68835781 - C CDH1 Frame_Shift_Ins p.P127Afs*41 0.46 TCGA-BH-A28Q-01 17 27903567 27903567 G A GIT1 Silent p.S460S 0.32 TCGA-BH-A28Q-01 17 6037 6037 G A DOC2B Silent p.N299N 0.25 TCGA-BH-A28Q-01 1 153941846 153941846 G A CREB3L4 Missense_Mutation p.C153Y 0.41 tolerated(0.05) benign(0.439) TCGA-BH-A28Q-01 1 216172264 216172264 C T USH2A Missense_Mutation p.V2208I 0.29 benign(0) TCGA-BH-A28Q-01 1 237813233 237813233 C T RYR2 Silent p.A2523A 0.20 TCGA-BH-A28Q-01 1 241798530 241798530 T G CHML Missense_Mutation p.K180T 0.26 tolerated(0.39) benign(0.014) TCGA-BH-A28Q-01 1 37324780 37324780 C G GRIK3 Missense_Mutation p.V345L 0.12 tolerated(0.25) benign(0.008) TCGA-BH-A28Q-01 21 10996118 10996118 C T TPTE RNA 0.18 TCGA-BH-A28Q-01 21 47978254 47978254 G A DIP2A Missense_Mutation p.R1306H 0.19 deleterious(0) possibly_damaging(0.521) TCGA-BH-A28Q-01 22 22318370 22318370 G A TOP3B Missense_Mutation p.R377C 0.26 deleterious(0) possibly_damaging(0.846) TCGA-BH-A28Q-01 22 50217038 50217038 C T BRD1 Missense_Mutation p.E310K 0.32 deleterious(0) probably_damaging(0.999) TCGA-BH-A28Q-01 2 219609846 219609846 T C TTLL4 Missense_Mutation p.I559T 0.37 tolerated(0.24) benign(0.011) TCGA-BH-A28Q-01 5 112173676 112173676 C T APC Silent p.L795L 0.25 TCGA-BH-A28Q-01 6 117642471 117642471 G A ROS1 Nonsense_Mutation p.R1910* 0.14 TCGA-BH-A28Q-01 X 125686114 125686114 A C DCAF12L1 Missense_Mutation p.S160A 0.36 deleterious(0.02) benign(0.076) TCGA-BH-A2L8-01 10 101985685 101985685 C T CHUK Missense_Mutation p.M65I 0.14 tolerated(0.07) benign(0.243) TCGA-BH-A2L8-01 10 102676867 102676867 C T FAM178A Missense_Mutation p.S242F 0.21 deleterious(0) possibly_damaging(0.724) TCGA-BH-A2L8-01 10 105793003 105793003 G A COL17A1 Silent p.F1429F 0.22 TCGA-BH-A2L8-01 10 105836095 105836095 C G COL17A1 Missense_Mutation p.E99Q 0.16 unknown(0) TCGA-BH-A2L8-01 10 112364018 112364018 G C SMC3 Missense_Mutation p.E1204D 0.15 tolerated(0.15) benign(0.178) TCGA-BH-A2L8-01 10 115639357 115639357 G A NHLRC2 Missense_Mutation p.G271E 0.17 deleterious(0) probably_damaging(0.997) TCGA-BH-A2L8-01 10 16547122 16547122 G C PTER Missense_Mutation p.D268H 0.18 tolerated(0.09) possibly_damaging(0.792) TCGA-BH-A2L8-01 10 18962960 18962960 G A ARL5B Missense_Mutation p.M129I 0.21 tolerated(0.25) benign(0.001) TCGA-BH-A2L8-01 10 29815937 29815937 C T SVIL Silent p.A765A 0.15 TCGA-BH-A2L8-01 10 35896912 35896912 C T GJD4 Silent p.F157F 0.36 TCGA-BH-A2L8-01 10 38241199 38241199 C T ZNF25 Silent p.Q409Q 0.08 TCGA-BH-A2L8-01 10 50171988 50171988 C A WDFY4 Silent p.I2775I 0.22 TCGA-BH-A2L8-01 10 61029684 61029684 G A FAM13C Missense_Mutation p.P260S 0.13 tolerated(0.17) probably_damaging(1) TCGA-BH-A2L8-01 10 64928293 64928293 C T JMJD1C Missense_Mutation p.E2479K 0.10 deleterious(0.01) probably_damaging(0.92) TCGA-BH-A2L8-01 10 70450998 70450998 C T TET1 Silent p.L1946L 0.21 TCGA-BH-A2L8-01 10 72604392 72604392 G A SGPL1 Missense_Mutation p.E64K 0.19 deleterious(0.03) possibly_damaging(0.698) TCGA-BH-A2L8-01 10 75532243 75532243 C G AC022400.2 Missense_Mutation p.E46Q 0.30 unknown(0) TCGA-BH-A2L8-01 10 75542728 75542728 C T CHCHD1 Intron 0.26 TCGA-BH-A2L8-01 10 75898029 75898029 C G AP3M1 Missense_Mutation p.E37Q 0.19 tolerated(0.43) benign(0.014) TCGA-BH-A2L8-01 10 79554639 79554639 G A DLG5 Silent p.I1838I 0.05 TCGA-BH-A2L8-01 10 8105964 8105964 G A GATA3 Missense_Mutation p.E263K 0.12 deleterious(0) benign(0.287) TCGA-BH-A2L8-01 10 8106058 8106058 T A GATA3 Missense_Mutation p.M294K 0.14 deleterious(0) possibly_damaging(0.583) TCGA-BH-A2L8-01 10 89574223 89574223 C T ATAD1 Missense_Mutation p.R45K 0.30 tolerated(0.37) benign(0.01) TCGA-BH-A2L8-01 10 89720709 89720709 C G PTEN Nonsense_Mutation p.S287* 0.33 TCGA-BH-A2L8-01 10 92660382 92660382 A T RPP30 Silent p.S251S 0.28 TCGA-BH-A2L8-01 10 97452730 97452730 C G TCTN3 Missense_Mutation p.R149T 0.16 tolerated(0.2) benign(0.374) TCGA-BH-A2L8-01 10 98109475 98109475 C T OPALIN Missense_Mutation p.E61K 0.16 tolerated_low_confidence(0.07) possibly_damaging(0.801) TCGA-BH-A2L8-01 11 101833636 101833636 C G KIAA1377 Missense_Mutation p.P624A 0.17 tolerated(0.21) benign(0.22) TCGA-BH-A2L8-01 11 102567422 102567422 C T MMP27 Missense_Mutation p.G255E 0.13 deleterious(0) probably_damaging(0.99) TCGA-BH-A2L8-01 11 111597694 111597694 C G PPP2R1B Missense_Mutation p.D667H 0.22 deleterious_low_confidence(0) benign(0.444) TCGA-BH-A2L8-01 11 111866817 111866817 C T DIXDC1 Missense_Mutation p.S567L 0.20 deleterious(0.02) benign(0.007) TCGA-BH-A2L8-01 11 118245696 118245696 C G UBE4A Missense_Mutation p.S408C 0.20 tolerated(0.05) possibly_damaging(0.792) TCGA-BH-A2L8-01 11 120312872 120312872 C G ARHGEF12 Missense_Mutation p.I421M 0.26 deleterious(0.01) benign(0.427) TCGA-BH-A2L8-01 11 120317131 120317131 C G ARHGEF12 Silent p.L455L 0.11 TCGA-BH-A2L8-01 11 18418136 18418136 G A LDHA Silent p.S14S 0.27 TCGA-BH-A2L8-01 11 1905529 1905529 C A LSP1 Missense_Mutation p.S332Y 0.15 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-BH-A2L8-01 11 20070277 20070277 C G NAV2 Silent p.L1325L 0.18 TCGA-BH-A2L8-01 11 20414539 20414539 C T PRMT3 Nonsense_Mutation p.Q132* 0.13 TCGA-BH-A2L8-01 11 32413552 32413552 C T WT1 Silent p.L466L 0.11 TCGA-BH-A2L8-01 11 3845314 3845314 G A PGAP2 Missense_Mutation p.E184K 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 11 46625050 46625050 G A HARBI1 3'UTR 0.19 TCGA-BH-A2L8-01 11 46625236 46625236 G T HARBI1 Silent p.L298L 0.23 TCGA-BH-A2L8-01 11 4903218 4903218 C G OR51T1 Missense_Mutation p.S57C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BH-A2L8-01 11 55945014 55945014 G C OR5J2 Missense_Mutation p.M307I 0.26 tolerated(0.28) benign(0.001) TCGA-BH-A2L8-01 11 57004167 57004167 G C APLNR Silent p.L104L 0.35 TCGA-BH-A2L8-01 11 57569455 57569455 G A CTNND1 Missense_Mutation p.D403N 0.12 deleterious(0) possibly_damaging(0.785) TCGA-BH-A2L8-01 11 5757883 5757883 C G OR56B1 Nonsense_Mutation p.S46* 0.20 TCGA-BH-A2L8-01 11 59189855 59189855 G C OR5A2 Missense_Mutation p.S191C 0.31 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 11 613081 613081 G A IRF7 Missense_Mutation p.S438F 0.19 deleterious(0) probably_damaging(0.996) TCGA-BH-A2L8-01 11 61578478 61578478 G C FADS1 Missense_Mutation p.L252V 0.25 tolerated(0.25) benign(0.028) TCGA-BH-A2L8-01 11 6190596 6190596 G C OR52B2 Missense_Mutation p.L321V 0.23 deleterious_low_confidence(0.01) benign(0.061) TCGA-BH-A2L8-01 11 62327763 62327763 G C EEF1G Missense_Mutation p.L341V 0.09 deleterious(0) possibly_damaging(0.848) TCGA-BH-A2L8-01 11 63312154 63312154 G A RARRES3 Silent p.V60V 0.27 TCGA-BH-A2L8-01 11 65373425 65373425 C T MAP3K11 Silent p.Q577Q 0.15 TCGA-BH-A2L8-01 11 65651446 65651446 C G FIBP Nonstop_Mutation p.*365Sext*? 0.20 TCGA-BH-A2L8-01 11 67046668 67046668 C T ADRBK1 Intron 0.18 TCGA-BH-A2L8-01 11 73536836 73536836 G A MRPL48 Missense_Mutation p.E66K 0.23 tolerated(0.07) benign(0.004) TCGA-BH-A2L8-01 11 74013501 74013501 C G P4HA3 Missense_Mutation p.Q160H 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-BH-A2L8-01 11 93456347 93456347 C G KIAA1731 Missense_Mutation p.L2030V 0.26 tolerated(0.23) benign(0.133) TCGA-BH-A2L8-01 11 93554310 93554310 G A VSTM5 Nonsense_Mutation p.Q91* 0.13 TCGA-BH-A2L8-01 12 101017656 101017656 C T GAS2L3 Missense_Mutation p.S358L 0.21 deleterious(0.01) benign(0.367) TCGA-BH-A2L8-01 12 105464405 105464405 G C ALDH1L2 Missense_Mutation p.S124C 0.17 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-BH-A2L8-01 12 107371808 107371808 C G MTERFD3 Missense_Mutation p.E229Q 0.27 tolerated(0.22) benign(0.053) TCGA-BH-A2L8-01 12 109671748 109671748 C T ACACB Silent p.L1415L 0.20 TCGA-BH-A2L8-01 12 110929721 110929721 G A VPS29 3'UTR 0.16 TCGA-BH-A2L8-01 12 110929785 110929785 A T VPS29 3'UTR 0.14 TCGA-BH-A2L8-01 12 113382293 113382293 C T OAS3 Missense_Mutation p.S158F 0.19 tolerated(0.05) possibly_damaging(0.549) TCGA-BH-A2L8-01 12 118821844 118821844 C T SUDS3 Silent p.L80L 0.25 TCGA-BH-A2L8-01 12 122395019 122395019 C G WDR66 Missense_Mutation p.F525L 0.19 deleterious(0.01) possibly_damaging(0.877) TCGA-BH-A2L8-01 12 132393761 132393761 G A ULK1 Silent p.L215L 0.38 TCGA-BH-A2L8-01 12 133354347 133354347 G C GOLGA3 Missense_Mutation p.F1209L 0.25 tolerated(0.28) benign(0.015) TCGA-BH-A2L8-01 12 25314105 25314105 G C CASC1 Silent p.T16T 0.21 TCGA-BH-A2L8-01 12 29462128 29462128 G C FAR2 Missense_Mutation p.D245H 0.11 deleterious(0) probably_damaging(0.978) TCGA-BH-A2L8-01 12 34175615 34175615 C T ALG10 Silent p.F27F 0.20 TCGA-BH-A2L8-01 12 4440468 4440468 G C C12orf5 Missense_Mutation p.E19Q 0.17 tolerated(0.1) benign(0.057) TCGA-BH-A2L8-01 12 48119180 48119180 G A ENDOU Missense_Mutation p.S6F 0.15 deleterious_low_confidence(0) benign(0.066) TCGA-BH-A2L8-01 12 4848374 4848374 C A GALNT8 Silent p.V185V 0.17 TCGA-BH-A2L8-01 12 48723256 48723256 C T H1FNT Missense_Mutation p.S61F 0.09 deleterious(0.02) probably_damaging(0.919) TCGA-BH-A2L8-01 12 50856374 50856374 C T LARP4 Silent p.L448L 0.10 TCGA-BH-A2L8-01 12 50860767 50860767 C T LARP4 Missense_Mutation p.S470L 0.24 tolerated(0.11) benign(0.01) TCGA-BH-A2L8-01 12 52467635 52467635 C G C12orf44 Silent p.V67V 0.15 TCGA-BH-A2L8-01 12 54676905 54676905 G C HNRNPA1 Missense_Mutation p.R265T 0.16 tolerated(0.52) unknown(0) TCGA-BH-A2L8-01 12 56489551 56489551 G A ERBB3 Silent p.Q672Q 0.08 TCGA-BH-A2L8-01 12 64383792 64383792 G C SRGAP1 Silent p.L122L 0.12 TCGA-BH-A2L8-01 12 66765534 66765534 C T GRIP1 Silent p.L932L 0.16 TCGA-BH-A2L8-01 12 6690650 6690650 C T CHD4 Intron 0.07 TCGA-BH-A2L8-01 12 6690968 6690968 C G CHD4 Missense_Mutation p.E1510Q 0.13 deleterious(0.01) probably_damaging(0.913) TCGA-BH-A2L8-01 12 674406 674406 G C NINJ2 Missense_Mutation p.L188V 0.17 tolerated_low_confidence(0.05) benign(0.046) TCGA-BH-A2L8-01 12 76749731 76749731 C G OSBPL8 Missense_Mutation p.D870H 0.25 tolerated(0.58) benign(0.015) TCGA-BH-A2L8-01 12 82792682 82792682 G C METTL25 Missense_Mutation p.E214Q 0.12 tolerated(0.87) benign(0.065) TCGA-BH-A2L8-01 12 83289819 83289819 G C TMTC2 Missense_Mutation p.D293H 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 12 88478620 88478620 C T CEP290 Missense_Mutation p.E1483K 0.12 benign(0.056) TCGA-BH-A2L8-01 12 99020541 99020541 C G IKBIP Missense_Mutation p.E101Q 0.29 tolerated(0.12) possibly_damaging(0.841) TCGA-BH-A2L8-01 13 103468896 103468896 C T BIVM-ERCC5 Silent p.L171L 0.22 TCGA-BH-A2L8-01 13 113532584 113532584 G A ATP11A Silent p.Q1127Q 0.13 TCGA-BH-A2L8-01 13 115002150 115002150 G C CDC16 Missense_Mutation p.D27H 0.12 deleterious(0) probably_damaging(0.997) TCGA-BH-A2L8-01 13 115089366 115089366 G C CHAMP1 Missense_Mutation p.D17H 0.13 deleterious(0) probably_damaging(0.914) TCGA-BH-A2L8-01 13 23928978 23928978 G C SACS Silent p.L591L 0.12 TCGA-BH-A2L8-01 13 24465539 24465539 G A C1QTNF9B Silent p.L297L 0.19 TCGA-BH-A2L8-01 13 30423781 30423781 G A UBL3 5'UTR 0.29 TCGA-BH-A2L8-01 13 35756527 35756527 C T NBEA Silent p.L1565L 0.25 TCGA-BH-A2L8-01 13 41517154 41517154 G A ELF1 Missense_Mutation p.S247F 0.18 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 13 53608510 53608510 G A OLFM4 Missense_Mutation p.D78N 0.11 tolerated(0.17) benign(0.049) TCGA-BH-A2L8-01 14 104145801 104145801 G C KLC1 Missense_Mutation p.E523D 0.13 tolerated_low_confidence(0.54) benign(0.008) TCGA-BH-A2L8-01 14 105413270 105413270 C G AHNAK2 Missense_Mutation p.E2840Q 0.13 benign(0.032) TCGA-BH-A2L8-01 14 106110068 106110068 C T IGHG2 Missense_Mutation p.V184I 0.15 tolerated(0.33) benign(0.106) TCGA-BH-A2L8-01 14 31602508 31602508 C A HECTD1 Missense_Mutation p.W1286C 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 14 38061240 38061240 G A FOXA1 Missense_Mutation p.S250F 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 14 39748733 39748733 C G CTAGE5 Missense_Mutation p.Q100E 0.23 tolerated(0.2) benign(0.046) TCGA-BH-A2L8-01 14 39870578 39870578 C T FBXO33 Missense_Mutation p.D400N 0.23 deleterious(0.04) probably_damaging(0.931) TCGA-BH-A2L8-01 14 66136187 66136187 G C FUT8 Missense_Mutation p.G275A 0.14 tolerated(1) benign(0.107) TCGA-BH-A2L8-01 14 73570039 73570039 A T RBM25 Missense_Mutation p.E336V 0.16 unknown(0) TCGA-BH-A2L8-01 14 73570098 73570098 G C RBM25 Missense_Mutation p.E356Q 0.15 unknown(0) TCGA-BH-A2L8-01 14 73969631 73969631 C G HEATR4 Missense_Mutation p.M691I 0.11 deleterious(0.05) benign(0.055) TCGA-BH-A2L8-01 14 77576159 77576159 G A CIPC Silent p.G47G 0.15 TCGA-BH-A2L8-01 14 77579894 77579894 G A CIPC Missense_Mutation p.E145K 0.25 tolerated(0.41) benign(0.313) TCGA-BH-A2L8-01 14 89073594 89073594 G A ZC3H14 Missense_Mutation p.M585I 0.11 tolerated(0.16) benign(0.03) TCGA-BH-A2L8-01 14 92608685 92608685 C T CPSF2 Missense_Mutation p.S280F 0.17 deleterious(0) probably_damaging(0.916) TCGA-BH-A2L8-01 14 95597962 95597962 G C DICER1 Missense_Mutation p.Q108E 0.09 tolerated(0.59) benign(0.003) TCGA-BH-A2L8-01 15 33954819 33954819 G A RYR3 Silent p.L1696L 0.18 TCGA-BH-A2L8-01 15 34134069 34134069 G A RYR3 Missense_Mutation p.E4348K 0.11 benign(0.009) TCGA-BH-A2L8-01 15 34355690 34355690 C T CHRM5 Nonsense_Mutation p.R258* 0.13 TCGA-BH-A2L8-01 15 42454233 42454233 C T VPS39 Silent p.L819L 0.15 TCGA-BH-A2L8-01 15 43621322 43621322 C T LCMT2 Missense_Mutation p.D456N 0.09 tolerated(0.38) benign(0.01) TCGA-BH-A2L8-01 15 48051961 48051961 G A SEMA6D 5'UTR 0.15 TCGA-BH-A2L8-01 15 52667644 52667644 G A MYO5A Silent p.L812L 0.15 TCGA-BH-A2L8-01 15 59146709 59146709 C G FAM63B Nonsense_Mutation p.S589* 0.09 TCGA-BH-A2L8-01 15 62256936 62256936 G A VPS13C Missense_Mutation p.S1059L 0.18 tolerated(0.33) benign(0.009) TCGA-BH-A2L8-01 15 62300873 62300873 G C VPS13C Missense_Mutation p.H367D 0.07 deleterious(0) benign(0.323) TCGA-BH-A2L8-01 15 66161899 66161899 C T RAB11A 5'UTR 0.32 TCGA-BH-A2L8-01 15 72874491 72874491 C A ARIH1 Missense_Mutation p.L518M 0.20 deleterious(0.02) possibly_damaging(0.847) TCGA-BH-A2L8-01 15 72958318 72958318 G A GOLGA6B Silent p.V601V 0.09 TCGA-BH-A2L8-01 15 74922117 74922117 G C CLK3 Missense_Mutation p.D604H 0.26 deleterious(0) probably_damaging(0.995) TCGA-BH-A2L8-01 15 76225245 76225245 G C FBXO22 Silent p.G338G 0.17 TCGA-BH-A2L8-01 15 81571975 81571975 C G IL16 Missense_Mutation p.S314C 0.29 deleterious(0.05) probably_damaging(0.987) TCGA-BH-A2L8-01 15 90281436 90281436 G A WDR93 Missense_Mutation p.E644K 0.26 tolerated(0.14) probably_damaging(0.993) TCGA-BH-A2L8-01 15 93510679 93510679 C T CHD2 Missense_Mutation p.L709F 0.22 deleterious(0) probably_damaging(0.999) TCGA-BH-A2L8-01 16 16295862 16295862 C T ABCC6 Missense_Mutation p.R391K 0.11 tolerated(0.05) benign(0.401) TCGA-BH-A2L8-01 16 20855956 20855956 G C AC004381.6 Missense_Mutation p.Q575H 0.33 tolerated(0.06) benign(0.111) TCGA-BH-A2L8-01 16 27709773 27709773 G A KIAA0556 Silent p.Q355Q 0.21 TCGA-BH-A2L8-01 16 3065372 3065372 C G CLDN6 Missense_Mutation p.K217N 0.26 deleterious(0) probably_damaging(0.995) TCGA-BH-A2L8-01 16 31094355 31094355 C T ZNF646 Missense_Mutation p.T1814M 0.19 deleterious_low_confidence(0.01) benign(0.393) TCGA-BH-A2L8-01 16 3339713 3339713 G A ZNF263 Missense_Mutation p.E403K 0.12 deleterious(0) probably_damaging(0.98) TCGA-BH-A2L8-01 16 3801796 3801796 C A CREBBP Missense_Mutation p.C1237F 0.08 unknown(0) TCGA-BH-A2L8-01 16 4322764 4322764 C T TFAP4 5'UTR 0.22 TCGA-BH-A2L8-01 16 58537830 58537830 C T NDRG4 Intron 0.30 TCGA-BH-A2L8-01 16 66424332 66424332 G C CDH5 Missense_Mutation p.D270H 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-BH-A2L8-01 16 70208876 70208876 C T CLEC18C Missense_Mutation p.L51F 0.26 deleterious(0.02) possibly_damaging(0.774) TCGA-BH-A2L8-01 16 71163612 71163612 C T HYDIN Silent p.A386A 0.19 TCGA-BH-A2L8-01 16 733164 733164 G A JMJD8 Intron 0.24 TCGA-BH-A2L8-01 16 77913106 77913106 C T VAT1L Silent p.F289F 0.18 TCGA-BH-A2L8-01 16 86612425 86612425 C T FOXL1 Silent p.F32F 0.36 TCGA-BH-A2L8-01 16 90037934 90037934 C T CENPBD1 Missense_Mutation p.E133K 0.06 tolerated(0.09) benign(0.034) TCGA-BH-A2L8-01 16 9858521 9858521 C T GRIN2A Missense_Mutation p.M960I 0.12 tolerated(1) benign(0.001) TCGA-BH-A2L8-01 17 16221195 16221195 C T PIGL Silent p.L211L 0.11 TCGA-BH-A2L8-01 17 29112973 29112973 G C CRLF3 Missense_Mutation p.L346V 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-BH-A2L8-01 17 33749892 33749892 G C SLFN12 Silent p.L52L 0.17 TCGA-BH-A2L8-01 17 34340801 34340801 G T CCL23 Nonsense_Mutation p.C95* 0.20 TCGA-BH-A2L8-01 17 37566462 37566462 G T MED1 Missense_Mutation p.S671Y 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-BH-A2L8-01 17 37885723 37885723 G A MIEN1 3'UTR 0.21 TCGA-BH-A2L8-01 17 39637140 39637140 G A KRT35 Silent p.L70L 0.16 TCGA-BH-A2L8-01 17 40722134 40722134 C T MLX Missense_Mutation p.S258L 0.16 deleterious(0) possibly_damaging(0.905) TCGA-BH-A2L8-01 17 41223199 41223199 C G BRCA1 Missense_Mutation p.D1599H 0.15 deleterious(0.01) possibly_damaging(0.864) TCGA-BH-A2L8-01 17 42453698 42453698 C G ITGA2B Missense_Mutation p.E776Q 0.18 tolerated(0.25) benign(0.314) TCGA-BH-A2L8-01 17 42477199 42477199 C T GPATCH8 Missense_Mutation p.R749K 0.16 tolerated_low_confidence(0.26) possibly_damaging(0.745) TCGA-BH-A2L8-01 17 42483399 42483399 C G GPATCH8 Missense_Mutation p.Q171H 0.08 deleterious(0.04) probably_damaging(0.927) TCGA-BH-A2L8-01 17 48157677 48157677 G A ITGA3 Missense_Mutation p.D920N 0.07 tolerated(1) benign(0.077) TCGA-BH-A2L8-01 17 49270242 49270242 C T MBTD1 Missense_Mutation p.E531K 0.15 deleterious(0.04) benign(0.004) TCGA-BH-A2L8-01 17 56321413 56321413 C T LPO Silent p.V45V 0.12 TCGA-BH-A2L8-01 17 565057 565057 C G VPS53 Missense_Mutation p.E122Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-BH-A2L8-01 17 61607489 61607489 G A KCNH6 Silent p.V115V 0.14 TCGA-BH-A2L8-01 17 61784684 61784684 G C STRADA Missense_Mutation p.R226G 0.21 deleterious(0.01) possibly_damaging(0.657) TCGA-BH-A2L8-01 17 65936663 65936663 C T BPTF Missense_Mutation p.S2123L 0.18 benign(0.373) TCGA-BH-A2L8-01 17 7017544 7017544 G C ASGR2 Missense_Mutation p.Q6E 0.17 tolerated(0.32) probably_damaging(0.993) TCGA-BH-A2L8-01 17 73484157 73484157 G C KIAA0195 Missense_Mutation p.G185A 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A2L8-01 17 73918118 73918118 G A FBF1 Silent p.L463L 0.08 TCGA-BH-A2L8-01 17 74536649 74536649 C G PRCD Nonsense_Mutation p.S46* 0.23 TCGA-BH-A2L8-01 17 7468886 7468886 G C SENP3 Missense_Mutation p.Q399H 0.07 tolerated(0.24) possibly_damaging(0.809) TCGA-BH-A2L8-01 17 74725781 74725781 C T METTL23 5'UTR 0.17 TCGA-BH-A2L8-01 17 76459075 76459075 C T DNAH17 Missense_Mutation p.E2995K 0.20 probably_damaging(0.92) TCGA-BH-A2L8-01 17 7726774 7726774 G A DNAH2 Silent p.E3719E 0.12 TCGA-BH-A2L8-01 17 7808967 7808967 G A CHD3 Silent p.R1448R 0.24 TCGA-BH-A2L8-01 17 7809938 7809938 G A CHD3 Missense_Mutation p.D1535N 0.21 possibly_damaging(0.831) TCGA-BH-A2L8-01 17 78919484 78919484 G A RPTOR Missense_Mutation p.D1015N 0.10 tolerated(0.14) probably_damaging(0.964) TCGA-BH-A2L8-01 17 8158418 8158418 C T PFAS Missense_Mutation p.R118C 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 17 8273444 8273444 C T KRBA2 Missense_Mutation p.D163N 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-BH-A2L8-01 18 21152054 21152054 G C NPC1 Missense_Mutation p.L91V 0.26 tolerated(0.49) benign(0.002) TCGA-BH-A2L8-01 18 23970049 23970049 G A TAF4B 3'UTR 0.19 TCGA-BH-A2L8-01 18 28979388 28979388 C T DSG4 Missense_Mutation p.P387S 0.08 deleterious(0.03) probably_damaging(1) TCGA-BH-A2L8-01 18 29122609 29122609 G C DSG2 Missense_Mutation p.E710Q 0.13 tolerated(0.44) benign(0.157) TCGA-BH-A2L8-01 18 43490681 43490681 C T EPG5 Missense_Mutation p.R1337K 0.23 tolerated(0.26) possibly_damaging(0.87) TCGA-BH-A2L8-01 18 61582750 61582750 C T SERPINB10 Silent p.D2D 0.15 TCGA-BH-A2L8-01 18 6992681 6992681 C T LAMA1 Missense_Mutation p.E1683K 0.18 tolerated(0.65) benign(0.033) TCGA-BH-A2L8-01 19 10108093 10108093 G A COL5A3 Missense_Mutation p.S406L 0.25 unknown(0) TCGA-BH-A2L8-01 19 11172467 11172467 C G SMARCA4 Nonsense_Mutation p.S1640* 0.11 TCGA-BH-A2L8-01 19 14866472 14866472 G A EMR2 Silent p.S470S 0.19 TCGA-BH-A2L8-01 19 15562619 15562619 C T RASAL3 Missense_Mutation p.G1008E 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-BH-A2L8-01 19 17435757 17435757 C T ANO8 Missense_Mutation p.E1034K 0.25 deleterious_low_confidence(0) unknown(0) TCGA-BH-A2L8-01 19 21365779 21365779 A G ZNF431 Missense_Mutation p.I225V 0.36 tolerated(0.06) benign(0.008) TCGA-BH-A2L8-01 19 33240740 33240740 G C TDRD12 Missense_Mutation p.E183Q 0.22 deleterious(0.02) benign(0.319) TCGA-BH-A2L8-01 19 35449354 35449354 G A ZNF792 Nonsense_Mutation p.Q469* 0.15 TCGA-BH-A2L8-01 19 35827138 35827138 C G CD22 Silent p.L204L 0.15 TCGA-BH-A2L8-01 19 37314208 37314208 C T ZNF790 Missense_Mutation p.E70K 0.16 tolerated(0.9) benign(0.002) TCGA-BH-A2L8-01 19 3779039 3779039 G C MATK Nonsense_Mutation p.S384* 0.18 TCGA-BH-A2L8-01 19 38385971 38385971 G T WDR87 Nonsense_Mutation p.Y85* 0.18 TCGA-BH-A2L8-01 19 39225014 39225014 G C CAPN12 Missense_Mutation p.S587C 0.32 tolerated(0.19) benign(0.213) TCGA-BH-A2L8-01 19 40366143 40366143 G A FCGBP Silent p.D4697D 0.32 TCGA-BH-A2L8-01 19 44832701 44832701 G A ZNF112 Missense_Mutation p.H543Y 0.22 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 19 44833586 44833586 G C ZNF112 Missense_Mutation p.Q248E 0.08 tolerated(0.32) benign(0.006) TCGA-BH-A2L8-01 19 49619635 49619635 C T LIN7B Missense_Mutation p.S115L 0.16 deleterious(0.03) possibly_damaging(0.595) TCGA-BH-A2L8-01 19 53612984 53612984 C G ZNF415 Missense_Mutation p.R105T 0.25 tolerated(0.16) benign(0.087) TCGA-BH-A2L8-01 19 7511959 7511959 G C ARHGEF18 Missense_Mutation p.E360Q 0.22 tolerated(0.12) probably_damaging(0.973) TCGA-BH-A2L8-01 19 7925449 7925449 G A EVI5L Silent p.E459E 0.13 TCGA-BH-A2L8-01 19 9046684 9046684 C T MUC16 Silent p.L11649L 0.10 TCGA-BH-A2L8-01 19 9049091 9049091 G C MUC16 Nonsense_Mutation p.S10847* 0.13 TCGA-BH-A2L8-01 1 100613596 100613596 G A TRMT13 Missense_Mutation p.E322K 0.21 tolerated(0.15) benign(0.016) TCGA-BH-A2L8-01 1 10473184 10473184 C G PGD Silent p.L240L 0.12 TCGA-BH-A2L8-01 1 112318791 112318791 C T KCND3 Missense_Mutation p.E626K 0.19 deleterious_low_confidence(0.01) benign(0.292) TCGA-BH-A2L8-01 1 113084637 113084637 G C ST7L Missense_Mutation p.S522C 0.16 tolerated(0.06) probably_damaging(0.95) TCGA-BH-A2L8-01 1 11596435 11596435 G A PTCHD2 Missense_Mutation p.V1291M 0.10 deleterious(0) probably_damaging(0.992) TCGA-BH-A2L8-01 1 116206759 116206759 G A VANGL1 Missense_Mutation p.D228N 0.21 tolerated(0.07) probably_damaging(1) TCGA-BH-A2L8-01 1 120345554 120345554 C G REG4 Intron 0.12 TCGA-BH-A2L8-01 1 120493424 120493424 G A NOTCH2 Missense_Mutation p.S801L 0.21 deleterious(0) possibly_damaging(0.678) TCGA-BH-A2L8-01 1 144916700 144916700 G C PDE4DIP Missense_Mutation p.S552C 0.11 deleterious(0) possibly_damaging(0.834) TCGA-BH-A2L8-01 1 148344650 148344650 C T NBPF20 Missense_Mutation p.E90K 0.04 benign(0.301) TCGA-BH-A2L8-01 1 149784945 149784945 C G HIST2H3D Missense_Mutation p.E98Q 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BH-A2L8-01 1 151023150 151023150 C G C1orf56 3'UTR 0.17 TCGA-BH-A2L8-01 1 152084334 152084334 C G TCHH Missense_Mutation p.E453D 0.17 unknown(0) TCGA-BH-A2L8-01 1 152692165 152692165 G T C1orf68 Silent p.V56V 0.24 TCGA-BH-A2L8-01 1 153591330 153591330 G C S100A13 3'UTR 0.19 TCGA-BH-A2L8-01 1 156946799 156946799 C G ARHGEF11 Silent p.L186L 0.11 TCGA-BH-A2L8-01 1 159921589 159921589 G C SLAMF9 Missense_Mutation p.F244L 0.12 tolerated(1) benign(0) TCGA-BH-A2L8-01 1 160279994 160279994 G A COPA Silent p.V377V 0.16 TCGA-BH-A2L8-01 1 160323980 160323980 C T NCSTN Nonsense_Mutation p.Q418* 0.16 TCGA-BH-A2L8-01 1 16255014 16255014 C G SPEN Nonsense_Mutation p.S760* 0.21 TCGA-BH-A2L8-01 1 169796247 169796247 A G C1orf112 Missense_Mutation p.I302V 0.12 tolerated(0.1) benign(0.047) TCGA-BH-A2L8-01 1 17609485 17609485 C G PADI3 Missense_Mutation p.P636A 0.17 tolerated(0.27) benign(0.141) TCGA-BH-A2L8-01 1 178436496 178436496 G C RASAL2 Missense_Mutation p.K1206N 0.14 deleterious(0.03) possibly_damaging(0.686) TCGA-BH-A2L8-01 1 186106009 186106009 G C HMCN1 Missense_Mutation p.E4508Q 0.16 probably_damaging(0.996) TCGA-BH-A2L8-01 1 18809522 18809522 G A KLHDC7A Missense_Mutation p.D683N 0.20 deleterious(0.01) probably_damaging(1) TCGA-BH-A2L8-01 1 196758858 196758858 G A CFHR3 Intron 0.12 TCGA-BH-A2L8-01 1 197071681 197071681 G C ASPM Missense_Mutation p.Q2234E 0.06 tolerated(0.12) benign(0.033) TCGA-BH-A2L8-01 1 197071912 197071912 T C ASPM Missense_Mutation p.K2157E 0.07 deleterious(0) possibly_damaging(0.611) TCGA-BH-A2L8-01 1 197128914 197128914 C G ZBTB41 Missense_Mutation p.E769Q 0.16 tolerated(0.37) benign(0.003) TCGA-BH-A2L8-01 1 197411319 197411319 G A CRB1 Missense_Mutation p.C1301Y 0.07 deleterious(0) probably_damaging(0.919) TCGA-BH-A2L8-01 1 200523707 200523707 C T KIF14 Missense_Mutation p.E1486K 0.08 tolerated(0.06) benign(0.01) TCGA-BH-A2L8-01 1 200569198 200569198 G C KIF14 Missense_Mutation p.Q782E 0.19 tolerated(1) benign(0.002) TCGA-BH-A2L8-01 1 200960101 200960101 G C KIF21B Missense_Mutation p.I877M 0.11 tolerated(0.32) benign(0.321) TCGA-BH-A2L8-01 1 203702398 203702398 C T ATP2B4 Intron 0.12 TCGA-BH-A2L8-01 1 204587686 204587686 C T LRRN2 Missense_Mutation p.E479K 0.19 deleterious(0) probably_damaging(0.996) TCGA-BH-A2L8-01 1 205628672 205628672 C T SLC45A3 Missense_Mutation p.S451N 0.33 tolerated(0.25) benign(0.003) TCGA-BH-A2L8-01 1 206145457 206145457 G A FAM72A Silent p.G78G 0.15 TCGA-BH-A2L8-01 1 215853634 215853634 C G USH2A Missense_Mutation p.E4051Q 0.13 benign(0.034) TCGA-BH-A2L8-01 1 220326692 220326692 G A RAB3GAP2 Silent p.V1234V 0.14 TCGA-BH-A2L8-01 1 221053654 221053654 C T HLX Missense_Mutation p.S152L 0.10 deleterious_low_confidence(0) benign(0.026) TCGA-BH-A2L8-01 1 2234756 2234756 C G SKI Silent p.L376L 0.26 TCGA-BH-A2L8-01 1 223717448 223717448 G C CAPN8 Missense_Mutation p.I648M 0.11 possibly_damaging(0.471) TCGA-BH-A2L8-01 1 228284917 228284917 C G ARF1 Silent p.L34L 0.11 TCGA-BH-A2L8-01 1 228521392 228521392 C G OBSCN Missense_Mutation p.S6279C 0.19 probably_damaging(0.977) TCGA-BH-A2L8-01 1 230923325 230923325 C G CAPN9 Missense_Mutation p.L526V 0.17 deleterious(0.04) benign(0.005) TCGA-BH-A2L8-01 1 233490734 233490734 G A MLK4 Missense_Mutation p.D430N 0.21 tolerated(0.12) benign(0.029) TCGA-BH-A2L8-01 1 235383721 235383721 C G ARID4B Missense_Mutation p.E435Q 0.10 tolerated(0.37) benign(0.085) TCGA-BH-A2L8-01 1 243289797 243289797 C G CEP170 Missense_Mutation p.R1570T 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BH-A2L8-01 1 24406673 24406673 C T MYOM3 Missense_Mutation p.D807N 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-BH-A2L8-01 1 245017546 245017546 G A HNRNPU 3'UTR 0.30 TCGA-BH-A2L8-01 1 247013387 247013387 C T AHCTF1 Missense_Mutation p.R1983H 0.23 deleterious(0.03) probably_damaging(0.977) TCGA-BH-A2L8-01 1 247031055 247031055 C T AHCTF1 Silent p.L1058L 0.20 TCGA-BH-A2L8-01 1 247265074 247265074 C T ZNF669 Silent p.Q136Q 0.11 TCGA-BH-A2L8-01 1 248262773 248262773 C T OR2L13 Silent p.L32L 0.12 TCGA-BH-A2L8-01 1 248844944 248844944 G C OR14I1 Nonsense_Mutation p.S221* 0.16 TCGA-BH-A2L8-01 1 249152047 249152047 G C ZNF692 Nonsense_Mutation p.S69* 0.24 TCGA-BH-A2L8-01 1 26227259 26227259 G C STMN1 Intron 0.33 TCGA-BH-A2L8-01 1 29064088 29064088 C A YTHDF2 Intron 0.13 TCGA-BH-A2L8-01 1 31346030 31346030 G C SDC3 3'UTR 0.12 TCGA-BH-A2L8-01 1 32092459 32092459 C T HCRTR1 Silent p.L386L 0.22 TCGA-BH-A2L8-01 1 32653608 32653608 G C TXLNA Missense_Mutation p.Q217H 0.18 deleterious(0.02) benign(0.102) TCGA-BH-A2L8-01 1 36372627 36372627 G C AGO1 Missense_Mutation p.D497H 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-BH-A2L8-01 1 39494533 39494533 G A NDUFS5 Missense_Mutation p.G46E 0.11 tolerated(0.06) probably_damaging(1) TCGA-BH-A2L8-01 1 39757591 39757591 G C MACF1 Missense_Mutation p.E604Q 0.09 possibly_damaging(0.854) TCGA-BH-A2L8-01 1 39782170 39782170 C G MACF1 Nonsense_Mutation p.S1191* 0.05 TCGA-BH-A2L8-01 1 40098333 40098333 C T HEYL Silent p.K45K 0.20 TCGA-BH-A2L8-01 1 40661308 40661308 C T RLF Missense_Mutation p.S160L 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-BH-A2L8-01 1 42619187 42619187 G A GUCA2B Silent p.Q22Q 0.15 TCGA-BH-A2L8-01 1 44169261 44169261 C T KDM4A Intron 0.19 TCGA-BH-A2L8-01 1 44595541 44595541 G A KLF17 Missense_Mutation p.E200K 0.16 tolerated(0.14) possibly_damaging(0.859) TCGA-BH-A2L8-01 1 46493481 46493481 G A MAST2 Silent p.T666T 0.15 TCGA-BH-A2L8-01 1 46662733 46662733 C T POMGNT1 Silent p.L48L 0.18 TCGA-BH-A2L8-01 1 47735512 47735512 C G STIL Missense_Mutation p.G804R 0.19 tolerated(0.54) benign(0.036) TCGA-BH-A2L8-01 1 52854969 52854969 C A ORC1 Missense_Mutation p.Q369H 0.15 tolerated(0.26) benign(0.002) TCGA-BH-A2L8-01 1 53930486 53930486 G A DMRTB1 Silent p.L309L 0.11 TCGA-BH-A2L8-01 1 6535165 6535165 C G PLEKHG5 Missense_Mutation p.D161H 0.09 deleterious(0) probably_damaging(0.991) TCGA-BH-A2L8-01 1 85392273 85392273 G A MCOLN2 3'UTR 0.13 TCGA-BH-A2L8-01 1 85537620 85537620 G C WDR63 5'UTR 0.09 TCGA-BH-A2L8-01 1 87181436 87181436 G A SH3GLB1 Silent p.E34E 0.20 TCGA-BH-A2L8-01 1 89524633 89524633 G A GBP1 Silent p.F174F 0.19 TCGA-BH-A2L8-01 1 90178302 90178302 G C LRRC8C Missense_Mutation p.R58T 0.18 tolerated(0.34) benign(0.003) TCGA-BH-A2L8-01 1 95609563 95609563 C G TMEM56 Missense_Mutation p.P36A 0.13 tolerated(0.13) benign(0.027) TCGA-BH-A2L8-01 20 23966755 23966755 C A GGTLC1 Nonsense_Mutation p.E88* 0.12 TCGA-BH-A2L8-01 20 30538178 30538178 C G PDRG1 Missense_Mutation p.D34H 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-BH-A2L8-01 20 32228206 32228206 G A CBFA2T2 Missense_Mutation p.E462K 0.14 tolerated(0.11) possibly_damaging(0.468) TCGA-BH-A2L8-01 20 3268275 3268275 C T C20orf194 Intron 0.17 TCGA-BH-A2L8-01 20 3268402 3268402 C T C20orf194 Missense_Mutation p.E788K 0.09 tolerated(0.19) possibly_damaging(0.547) TCGA-BH-A2L8-01 20 34293154 34293154 G A RBM39 Missense_Mutation p.S469L 0.17 deleterious(0) probably_damaging(0.984) TCGA-BH-A2L8-01 20 3847408 3847408 G T MAVS 3'UTR 0.15 TCGA-BH-A2L8-01 20 43572097 43572097 G A TOMM34 Silent p.L274L 0.16 TCGA-BH-A2L8-01 20 44681639 44681639 C T SLC12A5 Silent p.V830V 0.09 TCGA-BH-A2L8-01 20 49575532 49575532 G A MOCS3 Silent p.P51P 0.30 TCGA-BH-A2L8-01 21 17199349 17199349 C T USP25 Missense_Mutation p.S507L 0.17 tolerated(0.26) benign(0) TCGA-BH-A2L8-01 21 30428810 30428810 C G CCT8 Missense_Mutation p.D545H 0.08 deleterious(0) unknown(0) TCGA-BH-A2L8-01 21 33642738 33642738 G A MIS18A Silent p.L168L 0.16 TCGA-BH-A2L8-01 21 33679048 33679048 G A MRAP Missense_Mutation p.M68I 0.19 tolerated(0.38) benign(0.027) TCGA-BH-A2L8-01 21 45811159 45811159 C T TRPM2 Missense_Mutation p.S482L 0.25 deleterious(0.01) benign(0.394) TCGA-BH-A2L8-01 22 19346930 19346930 C T HIRA Silent p.L721L 0.18 TCGA-BH-A2L8-01 22 20386746 20386746 G C PI4KAP1 RNA 0.10 TCGA-BH-A2L8-01 22 20939276 20939276 G C MED15 Missense_Mutation p.M646I 0.26 tolerated(0.14) benign(0.444) TCGA-BH-A2L8-01 22 22599369 22599369 C T VPREB1 Nonsense_Mutation p.Q20* 0.20 TCGA-BH-A2L8-01 22 24967993 24967993 G A SNRPD3 3'UTR 0.38 TCGA-BH-A2L8-01 22 26877751 26877751 C G HPS4 5'UTR 0.04 TCGA-BH-A2L8-01 22 29727487 29727487 G A AP1B1 Silent p.F825F 0.16 TCGA-BH-A2L8-01 22 30768209 30768209 C G CCDC157 Silent p.V423V 0.35 TCGA-BH-A2L8-01 22 32239673 32239673 C G DEPDC5 Silent p.L883L 0.19 TCGA-BH-A2L8-01 22 35478510 35478510 G C ISX Splice_Site p.X77_splice 0.12 TCGA-BH-A2L8-01 22 38074659 38074659 G C LGALS1 Missense_Mutation p.E87Q 0.23 tolerated(0.05) benign(0.309) TCGA-BH-A2L8-01 22 42526878 42526878 C G CYP2D6 5'UTR 0.18 TCGA-BH-A2L8-01 22 42981866 42981866 C T POLDIP3 Silent p.L399L 0.17 TCGA-BH-A2L8-01 22 44079664 44079664 G C EFCAB6 Missense_Mutation p.S405C 0.10 tolerated(0.17) benign(0) TCGA-BH-A2L8-01 22 46704316 46704316 C T GTSE1 Missense_Mutation p.P80S 0.14 tolerated(0.59) benign(0.006) TCGA-BH-A2L8-01 22 46746264 46746264 G A TRMU Silent p.L185L 0.18 TCGA-BH-A2L8-01 22 47116889 47116889 C G CERK Missense_Mutation p.E56Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-BH-A2L8-01 22 50718176 50718176 G C PLXNB2 Silent p.L1424L 0.14 TCGA-BH-A2L8-01 2 111881473 111881473 G A BCL2L11 Missense_Mutation p.E51K 0.26 deleterious(0.04) benign(0.054) TCGA-BH-A2L8-01 2 11752669 11752669 G T GREB1 Nonsense_Mutation p.E1019* 0.17 TCGA-BH-A2L8-01 2 127944841 127944841 C T CYP27C1 3'UTR 0.12 TCGA-BH-A2L8-01 2 133174900 133174900 C G GPR39 Missense_Mutation p.I95M 0.12 deleterious(0) probably_damaging(0.998) TCGA-BH-A2L8-01 2 133402801 133402801 C T GPR39 Silent p.F328F 0.19 TCGA-BH-A2L8-01 2 15758356 15758356 C T DDX1 Nonsense_Mutation p.Q390* 0.16 TCGA-BH-A2L8-01 2 15770902 15770902 G A DDX1 Missense_Mutation p.G699R 0.11 tolerated(0.22) benign(0.125) TCGA-BH-A2L8-01 2 160803360 160803360 C G PLA2R1 Missense_Mutation p.G1307R 0.13 tolerated(0.19) benign(0.151) TCGA-BH-A2L8-01 2 160843762 160843762 C T PLA2R1 Missense_Mutation p.E648K 0.08 tolerated(0.78) benign(0.003) TCGA-BH-A2L8-01 2 162873352 162873352 G A DPP4 Missense_Mutation p.S498L 0.25 tolerated(0.13) benign(0.043) TCGA-BH-A2L8-01 2 167060918 167060918 C T SCN9A Missense_Mutation p.M1474I 0.13 deleterious(0.01) benign(0.209) TCGA-BH-A2L8-01 2 167089853 167089853 C G SCN9A Missense_Mutation p.M1296I 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-BH-A2L8-01 2 170518927 170518927 C T CCDC173 Missense_Mutation p.E228K 0.14 tolerated(0.27) benign(0.17) TCGA-BH-A2L8-01 2 174943741 174943741 C T OLA1 Missense_Mutation p.M348I 0.10 tolerated(0.11) benign(0.249) TCGA-BH-A2L8-01 2 179397043 179397043 C T TTN Missense_Mutation p.E34767K 0.16 TCGA-BH-A2L8-01 2 179425723 179425723 G A TTN Missense_Mutation p.A28379V 0.20 TCGA-BH-A2L8-01 2 179443670 179443670 G A TTN Missense_Mutation p.S22696L 0.20 TCGA-BH-A2L8-01 2 179447050 179447050 C T TTN Missense_Mutation p.E22045K 0.32 TCGA-BH-A2L8-01 2 187626577 187626577 C T FAM171B Missense_Mutation p.S503L 0.16 tolerated(0.31) benign(0.165) TCGA-BH-A2L8-01 2 190606108 190606108 C T ANKAR Silent p.I1247I 0.16 TCGA-BH-A2L8-01 2 203972390 203972390 C G NBEAL1 Silent p.L447L 0.09 TCGA-BH-A2L8-01 2 206166199 206166199 G C PARD3B Missense_Mutation p.D740H 0.15 tolerated(0.06) possibly_damaging(0.673) TCGA-BH-A2L8-01 2 206166469 206166469 C G PARD3B Intron 0.32 TCGA-BH-A2L8-01 2 215301441 215301441 C G VWC2L Missense_Mutation p.P160R 0.14 deleterious(0) probably_damaging(0.996) TCGA-BH-A2L8-01 2 220284998 220284998 G A DES Missense_Mutation p.R222H 0.15 deleterious(0.02) benign(0.136) TCGA-BH-A2L8-01 2 226446894 226446894 G C NYAP2 Missense_Mutation p.R254T 0.12 deleterious(0.03) benign(0.437) TCGA-BH-A2L8-01 2 228401659 228401659 C T AGFG1 Missense_Mutation p.S467F 0.22 deleterious(0) possibly_damaging(0.498) TCGA-BH-A2L8-01 2 238449572 238449572 C T MLPH Missense_Mutation p.A473V 0.11 tolerated(0.13) possibly_damaging(0.558) TCGA-BH-A2L8-01 2 23929372 23929372 G C KLHL29 Missense_Mutation p.K822N 0.11 deleterious(0) probably_damaging(0.972) TCGA-BH-A2L8-01 2 241710399 241710399 C G KIF1A Missense_Mutation p.E444Q 0.28 deleterious(0) probably_damaging(0.964) TCGA-BH-A2L8-01 2 25467168 25467168 C T DNMT3A Silent p.P569P 0.23 TCGA-BH-A2L8-01 2 27592329 27592329 C G EIF2B4 Missense_Mutation p.G76R 0.18 deleterious(0.03) probably_damaging(1) TCGA-BH-A2L8-01 2 27800937 27800937 G C C2orf16 Missense_Mutation p.E500Q 0.15 tolerated(0.33) benign(0.008) TCGA-BH-A2L8-01 2 28865983 28865983 C T PLB1 3'UTR 0.31 TCGA-BH-A2L8-01 2 3193164 3193164 C T TSSC1 Missense_Mutation p.D369N 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-BH-A2L8-01 2 43015732 43015732 G C HAAO Silent p.L32L 0.17 TCGA-BH-A2L8-01 2 44161331 44161331 C T LRPPRC Missense_Mutation p.E912K 0.19 deleterious(0) possibly_damaging(0.899) TCGA-BH-A2L8-01 2 60987417 60987417 G T PAPOLG Nonsense_Mutation p.E56* 0.30 TCGA-BH-A2L8-01 2 63667077 63667077 C T WDPCP Intron 0.21 TCGA-BH-A2L8-01 2 86371534 86371534 G A IMMT Nonsense_Mutation p.Q712* 0.25 TCGA-BH-A2L8-01 2 87049465 87049465 C G CD8B Intron 0.13 TCGA-BH-A2L8-01 2 9570957 9570957 C G CPSF3 Missense_Mutation p.H97D 0.17 deleterious(0) possibly_damaging(0.837) TCGA-BH-A2L8-01 2 99651728 99651728 G A TSGA10 Nonsense_Mutation p.R527* 0.21 TCGA-BH-A2L8-01 3 100432575 100432575 C T TFG Nonsense_Mutation p.Q16* 0.25 TCGA-BH-A2L8-01 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-BH-A2L8-01 3 11354835 11354835 G A ATG7 Missense_Mutation p.E157K 0.17 tolerated(0.16) benign(0.002) TCGA-BH-A2L8-01 3 113755607 113755607 C G KIAA1407 Missense_Mutation p.E148Q 0.15 tolerated(0.44) probably_damaging(0.913) TCGA-BH-A2L8-01 3 119187826 119187826 C T POGLUT1 5'UTR 0.18 TCGA-BH-A2L8-01 3 134197388 134197388 C T ANAPC13 3'UTR 0.28 TCGA-BH-A2L8-01 3 134851668 134851668 C T EPHB1 Silent p.I358I 0.26 TCGA-BH-A2L8-01 3 138289227 138289227 G A CEP70 Missense_Mutation p.S133L 0.15 tolerated(0.11) probably_damaging(0.999) TCGA-BH-A2L8-01 3 139894828 139894828 C T CLSTN2 Missense_Mutation p.H49Y 0.12 deleterious(0) possibly_damaging(0.873) TCGA-BH-A2L8-01 3 140396981 140396981 G T TRIM42 5'UTR 0.16 TCGA-BH-A2L8-01 3 140397023 140397023 G C TRIM42 5'UTR 0.07 TCGA-BH-A2L8-01 3 149563824 149563824 C T RNF13 Missense_Mutation p.S4F 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-BH-A2L8-01 3 169557775 169557775 G A LRRC31 Nonsense_Mutation p.Q552* 0.10 TCGA-BH-A2L8-01 3 178952090 178952090 G C PIK3CA Missense_Mutation p.G1049R 0.16 tolerated(0.09) possibly_damaging(0.487) TCGA-BH-A2L8-01 3 183435461 183435461 G C YEATS2 Missense_Mutation p.K41N 0.19 deleterious(0) probably_damaging(0.96) TCGA-BH-A2L8-01 3 185375096 185375096 C T IGF2BP2 Missense_Mutation p.R455K 0.45 tolerated(0.08) benign(0.061) TCGA-BH-A2L8-01 3 186954290 186954290 C T MASP1 Missense_Mutation p.E457K 0.12 tolerated(0.84) benign(0.005) TCGA-BH-A2L8-01 3 19322765 19322765 C T KCNH8 Missense_Mutation p.S129L 0.14 deleterious(0) probably_damaging(0.996) TCGA-BH-A2L8-01 3 193854190 193854190 G C HES1 Missense_Mutation p.E7D 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.827) TCGA-BH-A2L8-01 3 193854266 193854266 G A HES1 Missense_Mutation p.E33K 0.21 deleterious(0) possibly_damaging(0.889) TCGA-BH-A2L8-01 3 193854273 193854273 G A HES1 Missense_Mutation p.R35K 0.21 tolerated(0.06) possibly_damaging(0.708) TCGA-BH-A2L8-01 3 193854434 193854434 G A HES1 Missense_Mutation p.R46Q 0.25 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 3 195968822 195968822 G T PCYT1A Silent p.I235I 0.21 TCGA-BH-A2L8-01 3 196088738 196088738 G C UBXN7 Missense_Mutation p.L429V 0.13 deleterious(0.02) possibly_damaging(0.872) TCGA-BH-A2L8-01 3 3886976 3886976 G A LRRN1 Silent p.L217L 0.20 TCGA-BH-A2L8-01 3 48696405 48696405 G A CELSR3 Silent p.V1221V 0.16 TCGA-BH-A2L8-01 3 48793865 48793865 C G PRKAR2A Missense_Mutation p.D296H 0.16 deleterious(0) possibly_damaging(0.868) TCGA-BH-A2L8-01 3 49169564 49169564 G A LAMB2 Silent p.L148L 0.14 TCGA-BH-A2L8-01 3 49397603 49397603 C G RHOA 3'UTR 0.14 TCGA-BH-A2L8-01 3 49397788 49397788 C G RHOA Missense_Mutation p.D146H 0.14 tolerated(0.11) benign(0.01) TCGA-BH-A2L8-01 3 49397800 49397800 C T RHOA Missense_Mutation p.E142K 0.15 tolerated(0.05) benign(0.089) TCGA-BH-A2L8-01 3 49397815 49397815 C T RHOA Missense_Mutation p.E137K 0.16 tolerated(0.47) benign(0.006) TCGA-BH-A2L8-01 3 49834418 49834418 G C CDHR4 Missense_Mutation p.F181L 0.19 tolerated(0.57) probably_damaging(0.959) TCGA-BH-A2L8-01 3 53810705 53810705 C T CACNA1D Missense_Mutation p.H1500Y 0.15 deleterious(0) probably_damaging(0.993) TCGA-BH-A2L8-01 3 57835511 57835511 C G SLMAP Missense_Mutation p.Q163E 0.23 tolerated(0.14) possibly_damaging(0.621) TCGA-BH-A2L8-01 3 69158029 69158029 C G LMOD3 3'UTR 0.38 TCGA-BH-A2L8-01 3 78666929 78666929 C T ROBO1 Missense_Mutation p.E1380K 0.23 deleterious(0) probably_damaging(0.952) TCGA-BH-A2L8-01 4 106317458 106317458 G C PPA2 Missense_Mutation p.Q273E 0.14 tolerated(1) benign(0.001) TCGA-BH-A2L8-01 4 119951272 119951272 G A SYNPO2 Missense_Mutation p.E448K 0.28 deleterious(0.02) possibly_damaging(0.889) TCGA-BH-A2L8-01 4 123277097 123277097 G A KIAA1109 Missense_Mutation p.D4818N 0.12 benign(0.189) TCGA-BH-A2L8-01 4 130023848 130023848 G A C4orf33 Missense_Mutation p.R28K 0.16 tolerated(0.62) benign(0.001) TCGA-BH-A2L8-01 4 1377614 1377614 C T UVSSA Missense_Mutation p.S641L 0.09 deleterious(0) probably_damaging(0.931) TCGA-BH-A2L8-01 4 151153941 151153941 C T DCLK2 Silent p.L526L 0.15 TCGA-BH-A2L8-01 4 153250865 153250865 C G FBXW7 Missense_Mutation p.D399H 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 4 156825210 156825210 G C TDO2 Missense_Mutation p.D26H 0.13 deleterious(0.02) probably_damaging(0.962) TCGA-BH-A2L8-01 4 165961497 165961497 G A TRIM60 Silent p.Q91Q 0.17 TCGA-BH-A2L8-01 4 169083772 169083772 G A ANXA10 Missense_Mutation p.E97K 0.13 deleterious(0.01) possibly_damaging(0.852) TCGA-BH-A2L8-01 4 174449901 174449901 C G HAND2 Missense_Mutation p.K180N 0.07 deleterious(0.03) benign(0.048) TCGA-BH-A2L8-01 4 184626159 184626159 C T TRAPPC11 Silent p.I997I 0.16 TCGA-BH-A2L8-01 4 186336952 186336952 C T UFSP2 Missense_Mutation p.E135K 0.16 tolerated(0.56) benign(0.079) TCGA-BH-A2L8-01 4 186336953 186336953 A C UFSP2 Missense_Mutation p.I134M 0.16 deleterious(0) possibly_damaging(0.55) TCGA-BH-A2L8-01 4 2744211 2744211 C T TNIP2 Missense_Mutation p.G355R 0.32 deleterious(0.04) benign(0.091) TCGA-BH-A2L8-01 4 2986304 2986304 C A GRK4 Silent p.V39V 0.24 TCGA-BH-A2L8-01 4 41683051 41683051 C G LIMCH1 Missense_Mutation p.S847C 0.06 tolerated(0.08) probably_damaging(0.998) TCGA-BH-A2L8-01 4 53610038 53610038 C G ERVMER34-1 Missense_Mutation p.M550I 0.07 deleterious_low_confidence(0) benign(0.043) TCGA-BH-A2L8-01 4 5642323 5642323 C G EVC2 Missense_Mutation p.R463T 0.18 deleterious(0) possibly_damaging(0.82) TCGA-BH-A2L8-01 4 57843589 57843589 C G NOA1 Missense_Mutation p.D55H 0.37 tolerated_low_confidence(0.07) benign(0.001) TCGA-BH-A2L8-01 4 62800719 62800719 C T LPHN3 Silent p.V690V 0.13 TCGA-BH-A2L8-01 4 76570845 76570845 C G G3BP2 Missense_Mutation p.E406D 0.11 deleterious(0.01) benign(0.302) TCGA-BH-A2L8-01 4 77817742 77817742 C G SOWAHB Missense_Mutation p.E421Q 0.29 deleterious(0) benign(0.403) TCGA-BH-A2L8-01 4 80976511 80976511 C T ANTXR2 Intron 0.10 TCGA-BH-A2L8-01 4 81196118 81196118 C T FGF5 Silent p.F137F 0.12 TCGA-BH-A2L8-01 4 86989095 86989095 C T MAPK10 Nonsense_Mutation p.W272* 0.08 TCGA-BH-A2L8-01 4 87694013 87694013 G C PTPN13 Missense_Mutation p.D1756H 0.17 tolerated(0.06) possibly_damaging(0.694) TCGA-BH-A2L8-01 4 88370351 88370351 C G NUDT9 Missense_Mutation p.I196M 0.26 tolerated(0.06) possibly_damaging(0.645) TCGA-BH-A2L8-01 4 99997568 99997568 C T ADH5 Missense_Mutation p.E234K 0.11 tolerated(0.85) benign(0.012) TCGA-BH-A2L8-01 5 109961003 109961003 C G TMEM232 Missense_Mutation p.D245H 0.19 deleterious(0.04) possibly_damaging(0.452) TCGA-BH-A2L8-01 5 111312564 111312564 G A NREP 5'UTR 0.10 TCGA-BH-A2L8-01 5 112228363 112228363 G C ZRSR1 Missense_Mutation p.E343Q 0.27 deleterious(0) probably_damaging(0.953) TCGA-BH-A2L8-01 5 112769375 112769375 C T TSSK1B 3'UTR 0.26 TCGA-BH-A2L8-01 5 130535233 130535233 C G LYRM7 Missense_Mutation p.P85R 0.14 deleterious(0.02) benign(0.372) TCGA-BH-A2L8-01 5 132537732 132537732 C T FSTL4 Silent p.V573V 0.11 TCGA-BH-A2L8-01 5 133533504 133533504 C T PPP2CA Missense_Mutation p.E297K 0.18 tolerated(0.17) benign(0.155) TCGA-BH-A2L8-01 5 137342812 137342812 C G FAM13B Missense_Mutation p.E239Q 0.13 tolerated(0.41) probably_damaging(0.995) TCGA-BH-A2L8-01 5 13792115 13792115 G A DNAH5 Silent p.I2812I 0.07 TCGA-BH-A2L8-01 5 138723536 138723536 C A MZB1 Missense_Mutation p.R163L 0.14 tolerated(0.23) benign(0.027) TCGA-BH-A2L8-01 5 140474807 140474807 C G PCDHB2 Missense_Mutation p.P145A 0.25 tolerated_low_confidence(0.08) benign(0.141) TCGA-BH-A2L8-01 5 140530263 140530263 C T PCDHB6 Missense_Mutation p.S142L 0.17 tolerated(0.67) benign(0.003) TCGA-BH-A2L8-01 5 140737104 140737104 C T PCDHGA4 Silent p.L779L 0.18 TCGA-BH-A2L8-01 5 149430000 149430000 C T HMGXB3 Silent p.F1129F 0.19 TCGA-BH-A2L8-01 5 149495436 149495436 C T PDGFRB Missense_Mutation p.E1071K 0.15 deleterious(0.03) benign(0.166) TCGA-BH-A2L8-01 5 150028289 150028289 G A SYNPO Missense_Mutation p.R395K 0.21 tolerated(0.65) benign(0.003) TCGA-BH-A2L8-01 5 150945893 150945893 G A FAT2 Missense_Mutation p.S867F 0.12 possibly_damaging(0.797) TCGA-BH-A2L8-01 5 150946822 150946822 C G FAT2 Missense_Mutation p.L557F 0.24 probably_damaging(0.944) TCGA-BH-A2L8-01 5 153149727 153149727 G C GRIA1 Splice_Site p.X685_splice 0.13 TCGA-BH-A2L8-01 5 154174816 154174816 C T LARP1 Silent p.I361I 0.15 TCGA-BH-A2L8-01 5 156959 156959 C T PLEKHG4B Missense_Mutation p.S451L 0.16 tolerated(0.05) benign(0.032) TCGA-BH-A2L8-01 5 159821042 159821042 C T C5orf54 Missense_Mutation p.D486N 0.10 tolerated(0.51) benign(0.003) TCGA-BH-A2L8-01 5 171488249 171488249 C G STK10 Missense_Mutation p.Q702H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BH-A2L8-01 5 176721018 176721018 G A NSD1 Missense_Mutation p.E2217K 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-BH-A2L8-01 5 23522825 23522825 C T PRDM9 Missense_Mutation p.S238L 0.10 deleterious(0) benign(0.008) TCGA-BH-A2L8-01 5 32089622 32089622 G A PDZD2 Missense_Mutation p.R2023K 0.33 tolerated(0.13) benign(0.005) TCGA-BH-A2L8-01 5 39306855 39306855 G A C9 Missense_Mutation p.S427L 0.18 deleterious(0.02) probably_damaging(0.938) TCGA-BH-A2L8-01 5 52778852 52778852 C T FST Silent p.F76F 0.19 TCGA-BH-A2L8-01 5 55081583 55081583 C T DDX4 Missense_Mutation p.P250S 0.13 tolerated(0.12) possibly_damaging(0.611) TCGA-BH-A2L8-01 5 57750794 57750794 G A PLK2 Nonsense_Mutation p.Q604* 0.16 TCGA-BH-A2L8-01 5 57790781 57790781 C T GAPT Missense_Mutation p.R140C 0.25 tolerated(0.18) benign(0) TCGA-BH-A2L8-01 5 58270601 58270601 C G PDE4D Missense_Mutation p.E774Q 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.663) TCGA-BH-A2L8-01 5 58270649 58270649 C T PDE4D Missense_Mutation p.E758K 0.15 tolerated_low_confidence(0.08) benign(0.13) TCGA-BH-A2L8-01 5 620210 620210 G C CEP72 Missense_Mutation p.E79D 0.23 deleterious(0.01) probably_damaging(0.931) TCGA-BH-A2L8-01 5 65105965 65105965 G A NLN Missense_Mutation p.E606K 0.11 tolerated(0.22) benign(0.011) TCGA-BH-A2L8-01 5 68662440 68662440 G A TAF9 Intron 0.14 TCGA-BH-A2L8-01 5 68662548 68662548 G C TAF9 Intron 0.14 TCGA-BH-A2L8-01 5 7859577 7859577 G C FASTKD3 Missense_Mutation p.Q654E 0.07 deleterious(0.02) benign(0.164) TCGA-BH-A2L8-01 5 86676366 86676366 C T RASA1 Nonsense_Mutation p.Q882* 0.15 TCGA-BH-A2L8-01 5 92921107 92921107 G A NR2F1 Silent p.R126R 0.15 TCGA-BH-A2L8-01 5 96090380 96090380 G C CAST Missense_Mutation p.D508H 0.12 tolerated(0.1) probably_damaging(1) TCGA-BH-A2L8-01 5 96512941 96512941 C T RIOK2 Missense_Mutation p.R126K 0.18 deleterious(0) probably_damaging(0.98) TCGA-BH-A2L8-01 5 99871472 99871472 G C FAM174A Missense_Mutation p.E80Q 0.23 tolerated(0.1) possibly_damaging(0.856) TCGA-BH-A2L8-01 6 10430166 10430166 G T LINC00518 RNA 0.15 TCGA-BH-A2L8-01 6 116832997 116832997 G C FAM26E Missense_Mutation p.E46D 0.11 tolerated(0.43) benign(0.096) TCGA-BH-A2L8-01 6 117609722 117609722 G A ROS1 Missense_Mutation p.S2326F 0.13 deleterious_low_confidence(0) benign(0.001) TCGA-BH-A2L8-01 6 130407294 130407294 C T L3MBTL3 Missense_Mutation p.H473Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-BH-A2L8-01 6 144835944 144835944 C G UTRN Missense_Mutation p.I1744M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A2L8-01 6 145160371 145160371 G A UTRN Silent p.L3376L 0.22 TCGA-BH-A2L8-01 6 145948524 145948524 C T EPM2A 3'UTR 0.14 TCGA-BH-A2L8-01 6 146256486 146256486 C T SHPRH Silent p.K887K 0.12 TCGA-BH-A2L8-01 6 160445709 160445709 C G IGF2R Missense_Mutation p.L207V 0.21 deleterious(0.01) benign(0.288) TCGA-BH-A2L8-01 6 168468077 168468077 G A FRMD1 Silent p.F118F 0.14 TCGA-BH-A2L8-01 6 170594384 170594384 G A DLL1 Silent p.D330D 0.15 TCGA-BH-A2L8-01 6 24134607 24134607 G A NRSN1 Missense_Mutation p.E18K 0.14 tolerated(0.26) benign(0.064) TCGA-BH-A2L8-01 6 26413924 26413924 G C BTN3A1 3'UTR 0.26 TCGA-BH-A2L8-01 6 27276927 27276927 G C POM121L2 Missense_Mutation p.S1008C 0.07 deleterious(0) benign(0.01) TCGA-BH-A2L8-01 6 28402580 28402580 C G ZSCAN23 Missense_Mutation p.E278Q 0.15 tolerated(0.22) possibly_damaging(0.867) TCGA-BH-A2L8-01 6 31525610 31525610 C T NFKBIL1 Silent p.V180V 0.15 TCGA-BH-A2L8-01 6 32095475 32095475 G C ATF6B Silent p.L48L 0.16 TCGA-BH-A2L8-01 6 33380081 33380081 C T PHF1 Missense_Mutation p.S14L 0.16 tolerated_low_confidence(0.13) benign(0.003) TCGA-BH-A2L8-01 6 35438059 35438059 C G RPL10A Silent p.L138L 0.36 TCGA-BH-A2L8-01 6 36489522 36489522 C G STK38 Missense_Mutation p.E127Q 0.17 tolerated(0.16) benign(0.261) TCGA-BH-A2L8-01 6 41196523 41196523 G C TREML4 Missense_Mutation p.K45N 0.22 deleterious(0.04) possibly_damaging(0.762) TCGA-BH-A2L8-01 6 41304008 41304008 C G NCR2 Missense_Mutation p.S79C 0.10 deleterious(0.01) possibly_damaging(0.844) TCGA-BH-A2L8-01 6 46661677 46661677 G A TDRD6 Missense_Mutation p.E1938K 0.07 deleterious(0.03) benign(0.048) TCGA-BH-A2L8-01 6 46677151 46677151 G C PLA2G7 Missense_Mutation p.S261C 0.15 deleterious(0.01) benign(0.336) TCGA-BH-A2L8-01 6 71567695 71567695 G A SMAP1 Silent p.S344S 0.29 TCGA-BH-A2L8-01 6 7295635 7295635 C T SSR1 Silent p.L261L 0.15 TCGA-BH-A2L8-01 6 7579712 7579712 C G DSP Missense_Mutation p.L1097V 0.13 probably_damaging(0.99) TCGA-BH-A2L8-01 6 75851861 75851861 G A COL12A1 Missense_Mutation p.S1615L 0.25 benign(0.042) TCGA-BH-A2L8-01 6 84233644 84233644 C T PRSS35 Nonsense_Mutation p.Q162* 0.11 TCGA-BH-A2L8-01 6 90366470 90366470 C G MDN1 Silent p.S5078S 0.12 TCGA-BH-A2L8-01 6 96974207 96974207 G C UFL1 Missense_Mutation p.D121H 0.21 deleterious(0) probably_damaging(0.997) TCGA-BH-A2L8-01 6 96974231 96974231 G A UFL1 Missense_Mutation p.D129N 0.20 deleterious(0) probably_damaging(0.998) TCGA-BH-A2L8-01 7 100014011 100014011 G A ZCWPW1 Missense_Mutation p.T183I 0.11 deleterious(0.03) benign(0.025) TCGA-BH-A2L8-01 7 100683228 100683228 C G MUC17 Missense_Mutation p.S2844C 0.10 unknown(0) TCGA-BH-A2L8-01 7 103290727 103290727 C T RELN Missense_Mutation p.D666N 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-BH-A2L8-01 7 113522199 113522199 G A PPP1R3A Silent p.I287I 0.19 TCGA-BH-A2L8-01 7 117171132 117171132 G C CFTR Missense_Mutation p.Q151H 0.20 deleterious(0.01) benign(0.085) TCGA-BH-A2L8-01 7 117431253 117431253 G C CTTNBP2 Missense_Mutation p.S666C 0.07 deleterious(0.05) benign(0.033) TCGA-BH-A2L8-01 7 123109376 123109376 G A IQUB Silent p.F491F 0.11 TCGA-BH-A2L8-01 7 127341329 127341329 G C SND1 Missense_Mutation p.E181Q 0.07 deleterious(0.01) benign(0.2) TCGA-BH-A2L8-01 7 136699711 136699711 C T CHRM2 Silent p.L33L 0.15 TCGA-BH-A2L8-01 7 136936040 136936040 C T PTN Missense_Mutation p.E130K 0.19 deleterious(0.03) benign(0.328) TCGA-BH-A2L8-01 7 140258001 140258001 G A DENND2A Missense_Mutation p.S634L 0.12 deleterious(0) probably_damaging(0.99) TCGA-BH-A2L8-01 7 142966030 142966030 G A GSTK1 3'UTR 0.20 TCGA-BH-A2L8-01 7 143098528 143098528 C T EPHA1 Silent p.K107K 0.30 TCGA-BH-A2L8-01 7 143701593 143701593 C A OR6B1 Missense_Mutation p.F168L 0.36 deleterious(0) probably_damaging(0.999) TCGA-BH-A2L8-01 7 143701938 143701938 C T OR6B1 Silent p.L283L 0.26 TCGA-BH-A2L8-01 7 150923404 150923404 G A ABCF2 Silent p.G47G 0.17 TCGA-BH-A2L8-01 7 156976606 156976606 G A UBE3C Silent p.L342L 0.09 TCGA-BH-A2L8-01 7 20201490 20201490 C T MACC1 5'UTR 0.16 TCGA-BH-A2L8-01 7 20685389 20685389 C T ABCB5 Missense_Mutation p.S230L 0.20 deleterious(0.05) possibly_damaging(0.755) TCGA-BH-A2L8-01 7 21813400 21813400 C G DNAH11 Missense_Mutation p.S3047C 0.17 benign(0.073) TCGA-BH-A2L8-01 7 21818683 21818683 G A DNAH11 Silent p.V3155V 0.20 TCGA-BH-A2L8-01 7 25218893 25218893 C G C7orf31 Missense_Mutation p.R12T 0.20 deleterious(0) benign(0.295) TCGA-BH-A2L8-01 7 42017206 42017206 G A GLI3 Missense_Mutation p.S588L 0.14 deleterious(0) probably_damaging(0.94) TCGA-BH-A2L8-01 7 43684885 43684885 C T COA1 Missense_Mutation p.D77N 0.15 deleterious(0.03) probably_damaging(0.944) TCGA-BH-A2L8-01 7 48312102 48312102 C T ABCA13 Missense_Mutation p.H947Y 0.19 benign(0.002) TCGA-BH-A2L8-01 7 4959833 4959833 G A MMD2 Missense_Mutation p.H87Y 0.38 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 7 64276007 64276007 G C ZNF138 Intron 0.17 TCGA-BH-A2L8-01 7 6731271 6731273 CTC TT ZNF12 Frame_Shift_Del p.E434Kfs*43 0.27 TCGA-BH-A2L8-01 7 6731289 6731289 C T ZNF12 Silent p.L428L 0.26 TCGA-BH-A2L8-01 7 73279648 73279648 C T WBSCR28 Missense_Mutation p.S133L 0.12 tolerated(0.05) benign(0.001) TCGA-BH-A2L8-01 7 76903798 76903798 G A CCDC146 Splice_Site p.X424_splice 0.21 TCGA-BH-A2L8-01 7 8095167 8095167 C T GLCCI1 Silent p.I267I 0.22 TCGA-BH-A2L8-01 7 98488014 98488014 C T TRRAP Silent p.F69F 0.16 TCGA-BH-A2L8-01 7 99694960 99694960 G A MCM7 Nonsense_Mutation p.Q389* 0.11 TCGA-BH-A2L8-01 7 99799236 99799236 C G GATS 3'UTR 0.45 TCGA-BH-A2L8-01 8 101145987 101145987 G C FBXO43 3'UTR 0.18 TCGA-BH-A2L8-01 8 103284880 103284880 C T UBR5 Missense_Mutation p.E2284K 0.19 deleterious(0) possibly_damaging(0.824) TCGA-BH-A2L8-01 8 104709373 104709373 C T RIMS2 Missense_Mutation p.S79L 0.36 deleterious_low_confidence(0) benign(0.182) TCGA-BH-A2L8-01 8 110451161 110451161 G A PKHD1L1 Missense_Mutation p.G1266R 0.14 deleterious(0.03) probably_damaging(0.949) TCGA-BH-A2L8-01 8 110461570 110461570 G T PKHD1L1 Missense_Mutation p.S2010I 0.16 deleterious(0) probably_damaging(0.996) TCGA-BH-A2L8-01 8 110477340 110477340 C G PKHD1L1 Missense_Mutation p.S2760C 0.22 deleterious(0.03) benign(0) TCGA-BH-A2L8-01 8 131179788 131179788 C T ASAP1 Silent p.Q301Q 0.17 TCGA-BH-A2L8-01 8 133088304 133088304 G A HHLA1 Missense_Mutation p.S474L 0.15 deleterious(0.01) benign(0.037) TCGA-BH-A2L8-01 8 133142088 133142088 C T KCNQ3 Silent p.L680L 0.27 TCGA-BH-A2L8-01 8 145619108 145619108 G A CPSF1 Silent p.I1335I 0.11 TCGA-BH-A2L8-01 8 145677767 145677767 G C CYHR1 Silent p.L224L 0.15 TCGA-BH-A2L8-01 8 2064059 2064059 C G MYOM2 Silent p.L1125L 0.20 TCGA-BH-A2L8-01 8 21903693 21903693 G C FGF17 Silent p.L47L 0.16 TCGA-BH-A2L8-01 8 24187543 24187543 G C ADAM28 Missense_Mutation p.E340Q 0.19 deleterious(0) probably_damaging(1) TCGA-BH-A2L8-01 8 25718703 25718703 G C EBF2 Missense_Mutation p.L402V 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.734) TCGA-BH-A2L8-01 8 30537029 30537029 C G GSR 3'UTR 0.13 TCGA-BH-A2L8-01 8 53084928 53084928 C G ST18 Missense_Mutation p.D165H 0.32 deleterious(0.03) benign(0.021) TCGA-BH-A2L8-01 8 6302903 6302903 G A MCPH1 Missense_Mutation p.E554K 0.24 tolerated(0.22) probably_damaging(0.987) TCGA-BH-A2L8-01 8 65528639 65528639 G C CYP7B1 Silent p.L153L 0.31 TCGA-BH-A2L8-01 8 68213613 68213613 G A ARFGEF1 Missense_Mutation p.P53L 0.16 tolerated(0.1) benign(0.031) TCGA-BH-A2L8-01 8 70515832 70515832 C G SULF1 Intron 0.12 TCGA-BH-A2L8-01 8 94934968 94934968 G A PDP1 Silent p.S252S 0.09 TCGA-BH-A2L8-01 8 95189831 95189831 G C CDH17 Missense_Mutation p.S90C 0.16 deleterious(0.01) possibly_damaging(0.474) TCGA-BH-A2L8-01 8 98736890 98736890 G A MTDH Missense_Mutation p.E581K 0.23 deleterious(0) probably_damaging(0.997) TCGA-BH-A2L8-01 8 99440631 99440631 G A KCNS2 Missense_Mutation p.E142K 0.14 tolerated(0.47) benign(0.075) TCGA-BH-A2L8-01 9 107288965 107288965 G A OR13C4 Missense_Mutation p.H176Y 0.27 deleterious(0.03) probably_damaging(0.944) TCGA-BH-A2L8-01 9 127220513 127220513 G C GPR144 Missense_Mutation p.Q561H 0.21 deleterious(0.04) probably_damaging(0.948) TCGA-BH-A2L8-01 9 128099860 128099860 C G GAPVD1 Nonsense_Mutation p.S983* 0.12 TCGA-BH-A2L8-01 9 130648829 130648829 G A ST6GALNAC6 3'UTR 0.14 TCGA-BH-A2L8-01 9 130648830 130648830 G A ST6GALNAC6 3'UTR 0.14 TCGA-BH-A2L8-01 9 131271192 131271192 C T GLE1 Missense_Mutation p.S46F 0.16 deleterious(0.01) benign(0.102) TCGA-BH-A2L8-01 9 131339114 131339114 G A SPTAN1 Missense_Mutation p.E222K 0.17 tolerated(0.1) probably_damaging(0.987) TCGA-BH-A2L8-01 9 133779645 133779645 C G FIBCD1 Missense_Mutation p.E398Q 0.30 deleterious(0.03) possibly_damaging(0.833) TCGA-BH-A2L8-01 9 135977119 135977119 C T RALGDS Missense_Mutation p.E748K 0.14 tolerated(0.42) unknown(0) TCGA-BH-A2L8-01 9 135978170 135978170 C T RALGDS Missense_Mutation p.E637K 0.13 deleterious(0) unknown(0) TCGA-BH-A2L8-01 9 135978184 135978184 C T RALGDS Missense_Mutation p.R632Q 0.18 tolerated(0.61) unknown(0) TCGA-BH-A2L8-01 9 136522303 136522303 C T DBH Silent p.F558F 0.08 TCGA-BH-A2L8-01 9 137650106 137650106 C T COL5A1 Silent p.D633D 0.10 TCGA-BH-A2L8-01 9 138454685 138454685 G C PAEP Missense_Mutation p.E86Q 0.20 tolerated(0.15) benign(0.284) TCGA-BH-A2L8-01 9 139751636 139751636 G C MAMDC4 Missense_Mutation p.M664I 0.18 tolerated(0.13) benign(0.022) TCGA-BH-A2L8-01 9 140056529 140056529 C G GRIN1 Missense_Mutation p.L562V 0.30 deleterious(0.01) possibly_damaging(0.592) TCGA-BH-A2L8-01 9 14619665 14619665 C T ZDHHC21 Missense_Mutation p.E213K 0.08 deleterious(0.01) possibly_damaging(0.897) TCGA-BH-A2L8-01 9 27950141 27950141 G A LINGO2 Missense_Mutation p.L177F 0.15 tolerated(0.69) benign(0.391) TCGA-BH-A2L8-01 9 34493197 34493197 G A DNAI1 Silent p.E229E 0.18 TCGA-BH-A2L8-01 9 38596034 38596034 C T ANKRD18A Missense_Mutation p.E435K 0.15 tolerated(0.09) possibly_damaging(0.636) TCGA-BH-A2L8-01 9 6644674 6644674 C T GLDC Missense_Mutation p.E92K 0.18 tolerated(0.14) benign(0.007) TCGA-BH-A2L8-01 9 71863199 71863199 C T TJP2 Intron 0.17 TCGA-BH-A2L8-01 9 77599900 77599900 G C C9orf41 Missense_Mutation p.L351V 0.14 tolerated(1) benign(0.017) TCGA-BH-A2L8-01 9 79441592 79441592 C T PRUNE2 Missense_Mutation p.E189K 0.22 deleterious(0) probably_damaging(0.998) TCGA-BH-A2L8-01 9 79865048 79865048 G A VPS13A Silent p.V691V 0.27 TCGA-BH-A2L8-01 9 91994113 91994113 G A SEMA4D Missense_Mutation p.P699S 0.19 tolerated(0.42) benign(0.011) TCGA-BH-A2L8-01 9 96082656 96082656 G A WNK2 3'Flank 0.12 TCGA-BH-A2L8-01 X 100880812 100880812 C T ARMCX3 Silent p.L281L 0.16 TCGA-BH-A2L8-01 X 109694495 109694495 C A RGAG1 Missense_Mutation p.S217Y 0.09 deleterious(0) probably_damaging(0.986) TCGA-BH-A2L8-01 X 109696070 109696070 G A RGAG1 Missense_Mutation p.G742E 0.20 deleterious(0.01) probably_damaging(0.929) TCGA-BH-A2L8-01 X 117054217 117054217 G C KLHL13 Missense_Mutation p.F122L 0.21 tolerated(0.08) possibly_damaging(0.664) TCGA-BH-A2L8-01 X 117576252 117576252 C T WDR44 Missense_Mutation p.R738C 0.10 deleterious(0) probably_damaging(0.973) TCGA-BH-A2L8-01 X 119249529 119249529 G A RHOXF1 Nonsense_Mutation p.Q82* 0.44 TCGA-BH-A2L8-01 X 119672545 119672545 C T CUL4B Missense_Mutation p.E626K 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-BH-A2L8-01 X 129290551 129290551 G C AIFM1 Missense_Mutation p.P45A 0.18 tolerated_low_confidence(0.17) benign(0.003) TCGA-BH-A2L8-01 X 129380918 129380918 C T ZNF280C Silent p.Q31Q 0.14 TCGA-BH-A2L8-01 X 148037888 148037888 C T AFF2 Silent p.I771I 0.18 TCGA-BH-A2L8-01 X 149639115 149639115 C T MAMLD1 Nonsense_Mutation p.Q399* 0.57 TCGA-BH-A2L8-01 X 151935930 151935930 G C MAGEA3 Silent p.L79L 0.05 TCGA-BH-A2L8-01 X 153590634 153590634 C T FLNA Missense_Mutation p.E878K 0.30 tolerated(0.06) possibly_damaging(0.745) TCGA-BH-A2L8-01 X 154065914 154065914 C G F8 Silent p.L2338L 0.23 TCGA-BH-A2L8-01 X 17819188 17819188 C T RAI2 Missense_Mutation p.E315K 0.19 deleterious(0) unknown(0) TCGA-BH-A2L8-01 X 18954233 18954233 G A PHKA2 Silent p.L359L 0.24 TCGA-BH-A2L8-01 X 20150342 20150342 C T EIF1AX Missense_Mutation p.E99K 0.14 deleterious(0.01) probably_damaging(0.934) TCGA-BH-A2L8-01 X 24735567 24735567 G C POLA1 Silent p.V283V 0.16 TCGA-BH-A2L8-01 X 31165397 31165397 C T DMD Missense_Mutation p.E3598K 0.12 possibly_damaging(0.486) TCGA-BH-A2L8-01 X 37969613 37969613 C T SYTL5 Nonsense_Mutation p.Q514* 0.25 TCGA-BH-A2L8-01 X 53570803 53570803 G A HUWE1 Missense_Mutation p.T3793M 0.12 unknown(0) TCGA-BH-A2L8-01 X 54577398 54577398 C G GNL3L Missense_Mutation p.L260V 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-BH-A2L8-01 X 55102533 55102533 C T PAGE2B Missense_Mutation p.S20F 0.18 tolerated(0.08) benign(0.01) TCGA-BH-A2L8-01 X 66931473 66931473 C T AR Silent p.L705L 0.14 TCGA-BH-A2L8-01 X 69261801 69261801 G A AWAT2 Silent p.L287L 0.19 TCGA-BH-A2L8-01 X 69563755 69563755 G A KIF4A Missense_Mutation p.E452K 0.19 tolerated(0.06) benign(0.028) TCGA-BH-A2L8-01 X 70462260 70462260 G A ZMYM3 Nonsense_Mutation p.R1188* 0.26 TCGA-BH-A2L8-01 X 78216688 78216688 C T P2RY10 Missense_Mutation p.S224F 0.16 deleterious(0) probably_damaging(0.979) TCGA-BH-A42U-01 10 77167182 77167182 G A RP11-399K21.14 5'Flank 0.06 TCGA-BH-A42U-01 10 88260052 88260052 G A WAPAL Silent p.D316D 0.08 TCGA-BH-A42U-01 10 96602618 96602618 G A CYP2C19 Missense_Mutation p.R329H 0.07 tolerated(0.27) benign(0.007) TCGA-BH-A42U-01 11 28352127 28352127 C T METTL15 Silent p.F321F 0.12 TCGA-BH-A42U-01 11 59210804 59210804 G A OR5A1 Missense_Mutation p.D55N 0.07 tolerated(0.08) benign(0.018) TCGA-BH-A42U-01 11 66742867 66742867 G A C11orf86 Missense_Mutation p.E12K 0.08 tolerated(0.18) benign(0) TCGA-BH-A42U-01 16 837377 837377 C T RPUSD1 Missense_Mutation p.V95M 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A42U-01 17 1800429 1800429 G A RPA1 Missense_Mutation p.R604Q 0.12 tolerated(0.09) benign(0.116) TCGA-BH-A42U-01 17 57465703 57465703 C T YPEL2 Nonsense_Mutation p.Q45* 0.06 TCGA-BH-A42U-01 18 18975382 18975382 C T GREB1L Missense_Mutation p.S131L 0.12 deleterious(0) possibly_damaging(0.713) TCGA-BH-A42U-01 19 47212570 47212570 C T PRKD2 Intron 0.10 TCGA-BH-A42U-01 19 56160383 56160383 C T CCDC106 5'UTR 0.08 TCGA-BH-A42U-01 1 119426718 119426718 T A TBX15 3'UTR 0.08 TCGA-BH-A42U-01 1 182520289 182520289 C T RGSL1 Silent p.F996F 0.16 TCGA-BH-A42U-01 1 220936298 220936298 C T MARC2 Missense_Mutation p.S219F 0.10 deleterious(0) probably_damaging(1) TCGA-BH-A42U-01 1 228560482 228560482 G C OBSCN Missense_Mutation p.E8292Q 0.08 possibly_damaging(0.636) TCGA-BH-A42U-01 1 6637090 6637090 G A TAS1R1 Silent p.E518E 0.09 TCGA-BH-A42U-01 2 114336326 114336326 T C FAM138B RNA 0.32 TCGA-BH-A42U-01 2 25354712 25354712 G T EFR3B Missense_Mutation p.S360I 0.18 deleterious(0.04) benign(0.043) TCGA-BH-A42U-01 2 44065562 44065562 G A ABCG5 Intron 0.17 TCGA-BH-A42U-01 3 9490299 9490299 C T SETD5 Silent p.F777F 0.09 TCGA-BH-A42U-01 4 100570806 100570807 AG - RP11-766F14.2 Frame_Shift_Del p.L1667Efs*38 0.15 TCGA-BH-A42U-01 5 127640648 127640648 C A FBN2 Splice_Site p.X1934_splice 0.12 TCGA-BH-A42U-01 5 157230702 157230702 G A CLINT1 Missense_Mutation p.S323F 0.15 tolerated(0.53) probably_damaging(0.998) TCGA-BH-A42U-01 6 106555181 106555181 G C PRDM1 Missense_Mutation p.E766D 0.11 deleterious(0.04) benign(0.39) TCGA-BH-A42U-01 6 26031895 26031895 G A HIST1H3B Missense_Mutation p.R132C 0.11 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-BH-A42U-01 6 42644577 42644577 G T UBR2 Missense_Mutation p.A1482S 0.18 tolerated(0.95) benign(0) TCGA-BH-A42U-01 7 101924116 101924116 G A SH2B2 5'Flank 0.05 TCGA-BH-A42U-01 7 119915092 119915092 G A KCND2 Missense_Mutation p.E136K 0.16 tolerated(0.06) possibly_damaging(0.622) TCGA-BH-A42U-01 7 21552864 21552864 G A SP4 3'UTR 0.08 TCGA-BH-A42U-01 7 94228178 94228178 G A SGCE Missense_Mutation p.P388S 0.06 tolerated(0.09) possibly_damaging(0.747) TCGA-BH-A42U-01 8 42706069 42706069 C G RNF170 3'Flank 0.08 TCGA-BH-A42U-01 9 79324670 79324670 C A PRUNE2 Silent p.G840G 0.06 TCGA-BH-A42V-01 10 72326361 72326361 G A PALD1 Missense_Mutation p.E815K 0.17 deleterious(0.01) possibly_damaging(0.642) TCGA-BH-A42V-01 11 1269731 1269731 C A MUC5B Missense_Mutation p.T3874K 0.19 unknown(0) TCGA-BH-A42V-01 11 48146604 48146604 C T PTPRJ Missense_Mutation p.S320F 0.14 deleterious(0.02) benign(0.052) TCGA-BH-A42V-01 11 82892090 82892090 C T PCF11 Nonsense_Mutation p.Q1342* 0.12 TCGA-BH-A42V-01 11 8639492 8639492 C T TRIM66 Silent p.%3D 0.28 TCGA-BH-A42V-01 12 45686634 45686634 G C ANO6 Intron 0.16 TCGA-BH-A42V-01 12 7026199 7026199 C T ENO2 Intron 0.14 TCGA-BH-A42V-01 12 85432011 85432011 C G LRRIQ1 Silent p.L19L 0.08 TCGA-BH-A42V-01 13 31034821 31034821 A G HMGB1 3'UTR 0.25 TCGA-BH-A42V-01 13 49841963 49841963 G A CDADC1 Missense_Mutation p.M256I 0.16 tolerated(0.1) benign(0.044) TCGA-BH-A42V-01 13 99446022 99446022 C G DOCK9 3'UTR 0.09 TCGA-BH-A42V-01 14 61180304 61180304 C G SIX4 Missense_Mutation p.E723Q 0.11 deleterious_low_confidence(0) benign(0.287) TCGA-BH-A42V-01 14 77698018 77698018 C G TMEM63C Missense_Mutation p.I146M 0.05 tolerated(0.06) possibly_damaging(0.595) TCGA-BH-A42V-01 15 102358817 102358817 A G OR4F15 Missense_Mutation p.Y143C 0.14 tolerated_low_confidence(0.06) benign(0.003) TCGA-BH-A42V-01 15 79056047 79056047 C T ADAMTS7 Nonsense_Mutation p.W1578* 0.12 TCGA-BH-A42V-01 16 2009719 2009719 G A NDUFB10 Missense_Mutation p.D32N 0.16 tolerated(0.43) possibly_damaging(0.821) TCGA-BH-A42V-01 16 58080688 58080688 C G MMP15 3'UTR 0.20 TCGA-BH-A42V-01 18 70461454 70461454 G A NETO1 Silent p.S179S 0.12 TCGA-BH-A42V-01 18 72347245 72347245 G A ZNF407 Missense_Mutation p.D1424N 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-BH-A42V-01 19 34719553 34719553 C G LSM14A 3'UTR 0.12 TCGA-BH-A42V-01 19 36279303 36279303 C G ARHGAP33 Missense_Mutation p.S1118C 0.10 deleterious_low_confidence(0) benign(0.122) TCGA-BH-A42V-01 19 37677381 37677381 G C ZNF585B Missense_Mutation p.S353C 0.10 deleterious(0) probably_damaging(0.979) TCGA-BH-A42V-01 19 38379519 38379519 G C WDR87 Missense_Mutation p.Q1559E 0.06 benign(0) TCGA-BH-A42V-01 19 4174718 4174718 G A SIRT6 Nonsense_Mutation p.Q322* 0.13 TCGA-BH-A42V-01 1 100127929 100127929 G A PALMD Missense_Mutation p.D34N 0.11 deleterious(0) benign(0.07) TCGA-BH-A42V-01 1 185069019 185069025 AAACCAG - RNF2 Frame_Shift_Del p.N279* 0.20 TCGA-BH-A42V-01 1 200819257 200819257 G C CAMSAP2 Missense_Mutation p.L1120F 0.10 deleterious(0) probably_damaging(0.981) TCGA-BH-A42V-01 1 233134110 233134110 G A PCNXL2 Missense_Mutation p.T1893M 0.15 deleterious(0.03) benign(0.006) TCGA-BH-A42V-01 1 233296053 233296053 C G PCNXL2 Missense_Mutation p.E1165Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BH-A42V-01 1 70820695 70820695 G A HHLA3 Missense_Mutation p.E21K 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.486) TCGA-BH-A42V-01 20 31790376 31790376 C G BPIFA4P RNA 0.08 TCGA-BH-A42V-01 20 35517783 35517783 C T TLDC2 Silent p.L214L 0.12 TCGA-BH-A42V-01 20 60889469 60889469 G A LAMA5 Silent p.L2799L 0.12 TCGA-BH-A42V-01 22 26839131 26839131 G A ASPHD2 Missense_Mutation p.E357K 0.10 deleterious(0) probably_damaging(0.99) TCGA-BH-A42V-01 22 32297755 32297755 G A DEPDC5 Missense_Mutation p.R1459Q 0.25 deleterious(0) possibly_damaging(0.862) TCGA-BH-A42V-01 22 35796444 35796444 G C MCM5 Missense_Mutation p.D5H 0.05 deleterious(0) probably_damaging(1) TCGA-BH-A42V-01 22 36006999 36006999 C T MB Missense_Mutation p.E84K 0.06 tolerated(0.17) benign(0.086) TCGA-BH-A42V-01 22 37627984 37627984 G A RAC2 Silent p.N92N 0.15 TCGA-BH-A42V-01 2 160206348 160206348 C T BAZ2B Missense_Mutation p.M1578I 0.15 benign(0.002) TCGA-BH-A42V-01 2 175213341 175213341 C T CIR1 Missense_Mutation p.E413K 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.712) TCGA-BH-A42V-01 2 32726891 32726891 C T BIRC6 Missense_Mutation p.S3048F 0.12 benign(0.224) TCGA-BH-A42V-01 3 127642153 127642153 G A KBTBD12 Silent p.S83S 0.18 TCGA-BH-A42V-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-BH-A42V-01 5 1219729 1219729 C G SLC6A19 Missense_Mutation p.I496M 0.09 tolerated(0.13) possibly_damaging(0.812) TCGA-BH-A42V-01 5 155935638 155935638 G A SGCD Missense_Mutation p.E74K 0.09 tolerated(1) benign(0.321) TCGA-BH-A42V-01 5 56177011 56177014 ATAG - MAP3K1 Frame_Shift_Del p.R763Cfs*35 0.13 TCGA-BH-A42V-01 6 32064878 32064878 C G TNXB Missense_Mutation p.R251P 0.06 probably_damaging(0.986) TCGA-BH-A42V-01 7 105221952 105221952 C T EFCAB10 5'Flank 0.07 TCGA-BH-A42V-01 7 127983880 127983880 G A RBM28 5'UTR 0.19 TCGA-BH-A42V-01 7 131194234 131194234 A G PODXL Silent p.L305L 0.08 TCGA-BH-A42V-01 7 27140983 27140987 TGAAA - HOXA2 Frame_Shift_Del p.H163Qfs*20 0.11 TCGA-BH-A42V-01 8 107371703 107371703 G A OXR1 Splice_Site 0.27 TCGA-BH-A42V-01 8 113301631 113301631 C T CSMD3 Silent p.L3037L 0.07 TCGA-BH-A42V-01 8 42611280 42611280 C T CHRNA6 Silent p.L354L 0.12 TCGA-BH-A42V-01 9 87487202 87487202 C T NTRK2 Intron 0.08 TCGA-BH-A42V-01 X 100617172 100617172 C T BTK Missense_Mutation p.E193K 0.27 tolerated(0.18) benign(0.052) TCGA-BH-A42V-01 X 5947366 5947366 C T NLGN4X Missense_Mutation p.G194R 0.17 deleterious(0) probably_damaging(1) TCGA-BH-A42V-01 X 7811962 7811962 C T VCX Nonsense_Mutation p.Q176* 0.12 TCGA-BH-A5IZ-01 10 119806543 119806543 C T RAB11FIP2 5'Flank 0.25 TCGA-BH-A5IZ-01 10 25883312 25883312 C - GPR158 Frame_Shift_Del p.L662Ffs*2 0.33 TCGA-BH-A5IZ-01 10 25883313 25883313 T A GPR158 Missense_Mutation p.L662H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BH-A5IZ-01 10 38241446 38241446 G A ZNF25 Missense_Mutation p.S327L 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-BH-A5IZ-01 10 46254832 46254832 G A FAM21C Missense_Mutation p.D540N 0.32 deleterious(0) probably_damaging(0.909) TCGA-BH-A5IZ-01 10 52390713 52390713 C A RP11-50E11.3 RNA 0.28 TCGA-BH-A5IZ-01 10 81050733 81050733 G T ZMIZ1 Missense_Mutation p.M186I 0.34 probably_damaging(0.943) TCGA-BH-A5IZ-01 10 95892012 95892012 G C PLCE1 Missense_Mutation p.E430Q 0.43 tolerated_low_confidence(0.43) benign(0.116) TCGA-BH-A5IZ-01 11 3687705 3687705 C A CHRNA10 Missense_Mutation p.V329F 0.09 deleterious(0) benign(0.222) TCGA-BH-A5IZ-01 11 5080547 5080547 A T OR52E2 Missense_Mutation p.F104Y 0.32 tolerated(0.11) benign(0.141) TCGA-BH-A5IZ-01 11 57069368 57069368 T C TNKS1BP1 Silent p.E1628E 0.28 TCGA-BH-A5IZ-01 12 10074743 10074743 G C CLEC2A Silent p.T76T 0.20 TCGA-BH-A5IZ-01 12 13211404 13211404 G T KIAA1467 Missense_Mutation p.L151F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A5IZ-01 12 49949668 49949668 C A KCNH3 Missense_Mutation p.P801Q 0.48 tolerated(0.18) benign(0.005) TCGA-BH-A5IZ-01 12 51086771 51086771 C T DIP2B Missense_Mutation p.A565V 0.12 tolerated(1) benign(0.018) TCGA-BH-A5IZ-01 14 92159484 92159484 G A CATSPERB Missense_Mutation p.R273C 0.10 deleterious(0.02) benign(0.005) TCGA-BH-A5IZ-01 15 78565507 78565507 C T DNAJA4 Silent p.A157A 0.42 TCGA-BH-A5IZ-01 16 2036126 2036126 T C GFER 3'UTR 0.10 TCGA-BH-A5IZ-01 16 30794371 30794371 G A ZNF629 Silent p.G426G 0.45 TCGA-BH-A5IZ-01 16 31473708 31473733 TGGGGGATTGGGCCCACTCGTCAGCC - ARMC5 Frame_Shift_Del p.G282Ffs*40 0.38 TCGA-BH-A5IZ-01 16 396809 396809 C G AXIN1 Missense_Mutation p.E73Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-BH-A5IZ-01 16 69965781 69965781 G C WWP2 Missense_Mutation p.G557A 0.54 deleterious(0.02) probably_damaging(0.984) TCGA-BH-A5IZ-01 17 37821696 37821696 G A TCAP Silent p.L28L 0.43 TCGA-BH-A5IZ-01 17 43481448 43481448 G T ARHGAP27 Missense_Mutation p.D157E 0.70 tolerated(1) benign(0.015) TCGA-BH-A5IZ-01 17 46801987 46801987 G T PRAC1 5'Flank 0.41 TCGA-BH-A5IZ-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.55 tolerated(0.13) possibly_damaging(0.631) TCGA-BH-A5IZ-01 17 79094515 79094515 G C AATK Missense_Mutation p.S1074W 0.50 deleterious(0.01) possibly_damaging(0.858) TCGA-BH-A5IZ-01 18 59763153 59763153 G T PIGN Missense_Mutation p.S703Y 0.28 tolerated(0.05) probably_damaging(0.943) TCGA-BH-A5IZ-01 19 10166339 10166339 T A C3P1 RNA 0.31 TCGA-BH-A5IZ-01 19 12757384 12757384 T C MAN2B1 3'UTR 0.38 TCGA-BH-A5IZ-01 19 15053104 15053104 G A OR7C2 Silent p.R268R 0.31 TCGA-BH-A5IZ-01 19 19232452 19232452 G A TMEM161A Missense_Mutation p.R228C 0.36 deleterious(0.01) benign(0.052) TCGA-BH-A5IZ-01 19 49622111 49622111 C G C19orf73 Missense_Mutation p.V57L 0.16 deleterious(0.04) possibly_damaging(0.621) TCGA-BH-A5IZ-01 19 52538518 52538526 TTTCAAAGT - ZNF432 In_Frame_Del p.T136_K138del 0.39 TCGA-BH-A5IZ-01 19 58983303 58983303 G A ZNF324 Missense_Mutation p.V482M 0.37 tolerated(0.09) probably_damaging(0.972) TCGA-BH-A5IZ-01 19 8131064 8131064 G A FBN3 Silent p.I2723I 0.39 TCGA-BH-A5IZ-01 19 8587613 8587613 C A MYO1F Silent p.P985P 0.39 TCGA-BH-A5IZ-01 1 109856074 109856074 C T SORT1 3'UTR 0.13 TCGA-BH-A5IZ-01 1 114092195 114092195 A T MAGI3 Silent p.S125S 0.53 TCGA-BH-A5IZ-01 1 155025919 155025919 C G ADAM15 Missense_Mutation p.I71M 0.21 tolerated(0.09) probably_damaging(0.949) TCGA-BH-A5IZ-01 1 176903419 176903419 G A ASTN1 Missense_Mutation p.A847V 0.56 deleterious(0.01) benign(0.246) TCGA-BH-A5IZ-01 1 181726134 181726134 A G CACNA1E Missense_Mutation p.I1401V 0.54 deleterious(0.05) benign(0.112) TCGA-BH-A5IZ-01 1 193218979 193218979 C T CDC73 Missense_Mutation p.R513W 0.46 deleterious(0.02) possibly_damaging(0.512) TCGA-BH-A5IZ-01 1 19442032 19442032 C A UBR4 Missense_Mutation p.M3641I 0.25 benign(0.38) TCGA-BH-A5IZ-01 1 198704339 198704339 A G PTPRC Silent p.K787K 0.27 TCGA-BH-A5IZ-01 1 201046073 201046073 G A CACNA1S Missense_Mutation p.P601L 0.32 tolerated(0.2) probably_damaging(1) TCGA-BH-A5IZ-01 1 209879174 209879174 A G HSD11B1 Missense_Mutation p.K36R 0.11 tolerated(1) benign(0) TCGA-BH-A5IZ-01 1 233114054 233114054 T A NTPCR 3'UTR 0.19 TCGA-BH-A5IZ-01 1 235929455 235929455 G T LYST Missense_Mutation p.F2015L 0.19 deleterious(0.02) probably_damaging(0.968) TCGA-BH-A5IZ-01 1 26795817 26795817 G T DHDDS 3'UTR 0.28 TCGA-BH-A5IZ-01 1 35870629 35870629 G C ZMYM4 Silent p.R1178R 0.26 TCGA-BH-A5IZ-01 1 44010810 44010810 G C PTPRF Missense_Mutation p.G22R 0.33 tolerated_low_confidence(0.47) benign(0.167) TCGA-BH-A5IZ-01 1 55139340 55139375 CCTGTAGTTCTGAGTCTTGCTTTTGATCCCACAGGC - MROH7 Splice_Site p.X566_splice 0.43 TCGA-BH-A5IZ-01 20 48257019 48257019 A G B4GALT5 Missense_Mutation p.Y264H 0.41 deleterious(0) probably_damaging(0.997) TCGA-BH-A5IZ-01 21 41710136 41710136 G A DSCAM Missense_Mutation p.L559F 0.44 deleterious(0.04) probably_damaging(0.996) TCGA-BH-A5IZ-01 21 45877478 45877478 G C LRRC3 3'UTR 0.36 TCGA-BH-A5IZ-01 2 130832163 130832163 A G POTEF Missense_Mutation p.L961P 0.38 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BH-A5IZ-01 2 33952828 33952828 G T AC009499.1 Intron 0.32 TCGA-BH-A5IZ-01 2 44173272 44173272 G C LRPPRC Silent p.A730A 0.35 TCGA-BH-A5IZ-01 2 96789873 96789885 CTGCAGGAACGGG - ASTL Frame_Shift_Del p.P334Gfs*14 0.57 TCGA-BH-A5IZ-01 3 115395122 115395122 C A GAP43 Missense_Mutation p.P134H 0.30 deleterious(0.02) possibly_damaging(0.819) TCGA-BH-A5IZ-01 3 133358853 133358853 C T TOPBP1 Missense_Mutation p.G728E 0.40 deleterious(0) probably_damaging(0.997) TCGA-BH-A5IZ-01 3 155282748 155282748 T C PLCH1 Missense_Mutation p.D330G 0.30 deleterious(0.03) possibly_damaging(0.861) TCGA-BH-A5IZ-01 3 170857303 170857306 CTAA - TNIK Frame_Shift_Del p.L458Rfs*35 0.34 TCGA-BH-A5IZ-01 3 184550545 184550545 T G VPS8 Silent p.S97S 0.07 TCGA-BH-A5IZ-01 3 186256290 186256290 G A CRYGS 3'UTR 0.33 TCGA-BH-A5IZ-01 3 48198869 48198871 CAA - CDC25A 3'UTR 0.50 TCGA-BH-A5IZ-01 4 167675842 167675842 G C SPOCK3 Missense_Mutation p.L253V 0.49 tolerated(0.17) possibly_damaging(0.557) TCGA-BH-A5IZ-01 4 186343669 186343669 C G UFSP2 Missense_Mutation p.D18H 0.40 deleterious(0.04) possibly_damaging(0.789) TCGA-BH-A5IZ-01 4 6606892 6606892 G T MAN2B2 Missense_Mutation p.E550D 0.54 tolerated(0.5) benign(0.022) TCGA-BH-A5IZ-01 5 125821464 125821464 G C GRAMD3 Missense_Mutation p.V368L 0.62 tolerated(1) benign(0.003) TCGA-BH-A5IZ-01 5 140167621 140167621 G A PCDHA1 Silent p.P582P 0.46 TCGA-BH-A5IZ-01 6 107390406 107390406 C T BEND3 Silent p.P663P 0.31 TCGA-BH-A5IZ-01 6 11135463 11135463 G A SMIM13 3'UTR 0.50 TCGA-BH-A5IZ-01 6 30231986 30231986 G C HCG17 Intron 0.46 TCGA-BH-A5IZ-01 6 31627874 31627891 CTCCCTTCTCTGAATAGT - C6orf47 5'UTR 0.38 TCGA-BH-A5IZ-01 6 56918699 56918699 G T KIAA1586 Nonsense_Mutation p.E468* 0.26 TCGA-BH-A5IZ-01 6 70092792 70092792 G A BAI3 Missense_Mutation p.D1449N 0.26 deleterious(0.05) benign(0.035) TCGA-BH-A5IZ-01 6 79664655 79664655 C T PHIP Missense_Mutation p.R1310H 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-BH-A5IZ-01 6 84234120 84234120 G T PRSS35 Missense_Mutation p.L320F 0.35 deleterious(0) probably_damaging(0.999) TCGA-BH-A5IZ-01 7 123594492 123594492 A T SPAM1 Nonsense_Mutation p.K290* 0.16 TCGA-BH-A5IZ-01 7 37780220 37780220 C A GPR141 Nonsense_Mutation p.Y75* 0.32 TCGA-BH-A5IZ-01 7 5567201 5567201 C T ACTB 3'UTR 0.19 TCGA-BH-A5IZ-01 7 6370532 6370532 T A FAM220A Missense_Mutation p.Y85F 0.28 tolerated(0.27) benign(0.075) TCGA-BH-A5IZ-01 7 82584707 82584707 A G PCLO Silent p.S1854S 0.40 TCGA-BH-A5IZ-01 7 99274124 99274124 G A CYP3A5 Intron 0.28 TCGA-BH-A5IZ-01 8 1497331 1497331 A T DLGAP2 Nonsense_Mutation p.K158* 0.31 TCGA-BH-A5IZ-01 8 71487006 71487006 T A TRAM1 3'UTR 0.36 TCGA-BH-A5IZ-01 9 123526773 123526773 G A FBXW2 3'UTR 0.22 TCGA-BH-A5IZ-01 9 129594905 129594905 C G ZBTB43 Silent p.V39V 0.45 TCGA-BH-A5IZ-01 9 138377841 138377841 G T PPP1R26 Silent p.L495L 0.42 TCGA-BH-A5IZ-01 9 33025277 33025277 C T DNAJA1 5'UTR 0.37 TCGA-BH-A5IZ-01 9 7798427 7798427 A C TMEM261 3'UTR 0.41 TCGA-BH-A5IZ-01 9 79118592 79118592 G A GCNT1 3'UTR 0.32 TCGA-BH-A5IZ-01 X 102003916 102003916 C T BHLHB9 5'UTR 0.37 TCGA-BH-A5IZ-01 X 144910871 144910871 G A TMEM257 3'UTR 0.41 TCGA-BH-A5IZ-01 X 149997772 149997772 A G CD99L2 Intron 0.33 TCGA-BH-A5IZ-01 X 18668703 18668703 C G CDKL5 Missense_Mutation p.Q991E 0.24 deleterious_low_confidence(0) benign(0.042) TCGA-BH-A5IZ-01 X 19391798 19391798 A T MAP3K15 Missense_Mutation p.V930D 0.25 tolerated(0.25) benign(0.001) TCGA-BH-A5IZ-01 X 21581525 21581525 A T CNKSR2 Missense_Mutation p.R521S 0.14 tolerated(0.34) benign(0.011) TCGA-BH-A5IZ-01 X 31164405 31164405 T C DMD Intron 0.39 TCGA-BH-A5IZ-01 X 31187564 31187564 T A DMD Missense_Mutation p.N3517Y 0.24 possibly_damaging(0.844) TCGA-BH-A5IZ-01 X 45605597 45605597 C T MIR221 RNA 0.40 TCGA-BH-A5IZ-01 X 48825564 48825564 G A KCND1 Missense_Mutation p.T372M 0.20 deleterious(0) probably_damaging(0.988) TCGA-BH-A5J0-01 10 102722879 102722879 G T FAM178A 3'Flank 0.23 TCGA-BH-A5J0-01 10 114172996 114172996 C T ACSL5 Silent p.D394D 0.15 TCGA-BH-A5J0-01 10 126519945 126519945 G A FAM175B Missense_Mutation p.E231K 0.16 deleterious(0.02) benign(0.082) TCGA-BH-A5J0-01 10 135233088 135233088 C T MTG1 Missense_Mutation p.T286M 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-BH-A5J0-01 11 101342870 101342870 C G TRPC6 Missense_Mutation p.E735Q 0.41 tolerated(0.08) probably_damaging(0.993) TCGA-BH-A5J0-01 11 17799294 17799295 - T KCNC1 Intron 0.21 TCGA-BH-A5J0-01 11 26720016 26720016 G C SLC5A12 Missense_Mutation p.I296M 0.23 deleterious(0.01) possibly_damaging(0.85) TCGA-BH-A5J0-01 11 320580 320580 G A IFITM3 Silent p.F78F 0.07 TCGA-BH-A5J0-01 11 62288755 62288755 C T AHNAK Missense_Mutation p.M4378I 0.39 benign(0.124) TCGA-BH-A5J0-01 11 6292165 6292165 C T CCKBR Intron 0.18 TCGA-BH-A5J0-01 11 64877234 64877234 C T VPS51 Missense_Mutation p.R573W 0.29 deleterious(0) possibly_damaging(0.613) TCGA-BH-A5J0-01 11 64974024 64974024 G A CAPN1 Missense_Mutation p.E482K 0.23 deleterious(0) possibly_damaging(0.876) TCGA-BH-A5J0-01 11 7335413 7335413 C T SYT9 Intron 0.28 TCGA-BH-A5J0-01 11 73675980 73675980 G C DNAJB13 Missense_Mutation p.R131P 0.47 tolerated(0.09) benign(0.006) TCGA-BH-A5J0-01 12 101521759 101521759 C T ANO4 3'UTR 0.24 TCGA-BH-A5J0-01 12 109838994 109838994 C T MYO1H Nonsense_Mutation p.Q207* 0.31 TCGA-BH-A5J0-01 12 11174543 11174543 G A TAS2R19 Missense_Mutation p.R210W 0.29 deleterious(0) possibly_damaging(0.846) TCGA-BH-A5J0-01 12 113382525 113382526 TG - OAS3 Intron 0.15 TCGA-BH-A5J0-01 12 118839610 118839610 G C SUDS3 Silent p.L220L 0.15 TCGA-BH-A5J0-01 12 121177129 121177129 G T ACADS Missense_Mutation p.V373L 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-BH-A5J0-01 12 27107176 27107176 C T FGFR1OP2 Silent p.L29L 0.30 TCGA-BH-A5J0-01 12 45429829 45429829 G A DBX2 Missense_Mutation p.R158C 0.40 deleterious(0.03) benign(0.007) TCGA-BH-A5J0-01 12 72026673 72026673 C A ZFC3H1 Missense_Mutation p.R937L 0.12 tolerated(0.73) benign(0.071) TCGA-BH-A5J0-01 12 970325 970325 C G WNK1 Silent p.L589L 0.28 TCGA-BH-A5J0-01 13 114426111 114426111 G A GRK1 Silent p.K350K 0.10 TCGA-BH-A5J0-01 13 46705069 46705069 G A LCP1 Missense_Mutation p.P544L 0.22 deleterious(0.03) benign(0.07) TCGA-BH-A5J0-01 14 22539468 22539468 G C TRAV22 Missense_Mutation p.E110Q 0.17 tolerated(0.35) benign(0.033) TCGA-BH-A5J0-01 14 38725572 38725572 G C CLEC14A 5'UTR 0.27 TCGA-BH-A5J0-01 15 41804458 41804458 G A LTK Missense_Mutation p.S122L 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BH-A5J0-01 15 54920082 54920082 G T UNC13C 3'UTR 0.13 TCGA-BH-A5J0-01 15 78316777 78316777 A - TBC1D2B Frame_Shift_Del p.L398Cfs*29 0.13 TCGA-BH-A5J0-01 15 79382758 79382759 - A RASGRF1 Frame_Shift_Ins p.Y28Lfs*75 0.10 TCGA-BH-A5J0-01 15 91769555 91769555 G A SV2B Missense_Mutation p.R21H 0.41 tolerated_low_confidence(0.16) benign(0.002) TCGA-BH-A5J0-01 16 1358592 1358592 T C UBE2I 5'Flank 0.07 TCGA-BH-A5J0-01 16 1967923 1967923 G T HS3ST6 Silent p.L103L 0.56 TCGA-BH-A5J0-01 16 24226123 24226123 G A PRKCB Missense_Mutation p.E670K 0.32 tolerated_low_confidence(0.63) benign(0.103) TCGA-BH-A5J0-01 16 72832389 72832399 CATGGCGATCT - ZFHX3 Frame_Shift_Del p.D1395Vfs*6 0.56 TCGA-BH-A5J0-01 17 48458754 48458754 C A EME1 3'UTR 0.31 TCGA-BH-A5J0-01 17 7577077 7577077 C T TP53 Silent p.E287E 0.53 TCGA-BH-A5J0-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.55 deleterious(0) probably_damaging(0.985) TCGA-BH-A5J0-01 18 29710932 29710932 C T RNF138 3'UTR 0.16 TCGA-BH-A5J0-01 19 2214609 2214609 G A DOT1L Intron 0.36 TCGA-BH-A5J0-01 19 52076475 52076475 C T ZNF175 5'UTR 0.22 TCGA-BH-A5J0-01 19 54848842 54848842 C T LILRA4 Missense_Mutation p.D261N 0.20 tolerated(0.19) benign(0.009) TCGA-BH-A5J0-01 1 110453404 110453404 G A CSF1 5'UTR 0.40 TCGA-BH-A5J0-01 1 159174725 159174725 C G DARC 5'Flank 0.06 TCGA-BH-A5J0-01 1 166826003 166826003 C T TADA1 3'UTR 0.10 TCGA-BH-A5J0-01 1 215799148 215799148 G T USH2A Missense_Mutation p.T5195N 0.22 probably_damaging(0.931) TCGA-BH-A5J0-01 1 223176237 223176237 C T DISP1 Missense_Mutation p.L500F 0.25 deleterious(0) probably_damaging(0.997) TCGA-BH-A5J0-01 1 247752099 247752099 C T OR2G2 Silent p.A146A 0.12 TCGA-BH-A5J0-01 1 33099302 33099302 G A ZBTB8OS Missense_Mutation p.H103Y 0.13 tolerated(0.1) benign(0.081) TCGA-BH-A5J0-01 1 38061424 38061424 C T GNL2 5'UTR 0.30 TCGA-BH-A5J0-01 1 89447448 89447448 C T RBMXL1 3'UTR 0.42 TCGA-BH-A5J0-01 20 34085758 34085758 G A CEP250 Missense_Mutation p.G1173R 0.13 benign(0.107) TCGA-BH-A5J0-01 20 35386557 35386557 A C DSN1 Missense_Mutation p.L220V 0.35 tolerated(0.37) benign(0.097) TCGA-BH-A5J0-01 20 60485538 60485538 G A CDH4 Missense_Mutation p.D417N 0.24 deleterious(0) probably_damaging(0.99) TCGA-BH-A5J0-01 20 8665692 8665692 T C PLCB1 Missense_Mutation p.F326L 0.17 deleterious(0) benign(0.247) TCGA-BH-A5J0-01 20 9519880 9519880 G A PAK7 3'UTR 0.25 TCGA-BH-A5J0-01 22 41967920 41967920 C T CSDC2 5'UTR 0.18 TCGA-BH-A5J0-01 2 131438382 131438382 G C CYP4F30P RNA 0.12 TCGA-BH-A5J0-01 2 179499204 179499204 C T TTN Missense_Mutation p.A14102T 0.19 TCGA-BH-A5J0-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.17 deleterious(0) probably_damaging(0.96) TCGA-BH-A5J0-01 2 200790463 200790463 G A C2orf69 Missense_Mutation p.D338N 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-BH-A5J0-01 2 200790577 200790577 G C C2orf69 Missense_Mutation p.E376Q 0.16 tolerated(0.12) benign(0.075) TCGA-BH-A5J0-01 2 200790628 200790628 G A C2orf69 3'UTR 0.12 TCGA-BH-A5J0-01 2 200790749 200790749 G C C2orf69 3'UTR 0.22 TCGA-BH-A5J0-01 2 20403762 20403762 C A SDC1 Nonsense_Mutation p.E147* 0.51 TCGA-BH-A5J0-01 2 20871225 20871225 C T GDF7 3'UTR 0.40 TCGA-BH-A5J0-01 2 24092590 24092590 G A ATAD2B Missense_Mutation p.S340F 0.34 deleterious(0) probably_damaging(0.987) TCGA-BH-A5J0-01 2 26781363 26781363 C A OTOF Missense_Mutation p.R26L 0.48 deleterious(0) probably_damaging(0.997) TCGA-BH-A5J0-01 2 42558305 42558305 G C EML4 3'UTR 0.42 TCGA-BH-A5J0-01 2 97483048 97483048 G A CNNM3 Missense_Mutation p.G345D 0.15 deleterious(0) probably_damaging(1) TCGA-BH-A5J0-01 3 10960032 10960032 T C SLC6A11 Silent p.C338C 0.16 TCGA-BH-A5J0-01 3 132378481 132378481 C T ACAD11 Missense_Mutation p.E39K 0.35 tolerated(0.27) benign(0.007) TCGA-BH-A5J0-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.50 deleterious(0.04) probably_damaging(0.96) TCGA-BH-A5J0-01 3 179280819 179280819 C T ACTL6A 5'UTR 0.30 TCGA-BH-A5J0-01 3 188933128 188933128 T C TPRG1 Silent p.A86A 0.06 TCGA-BH-A5J0-01 3 39180104 39180104 T C TTC21A Missense_Mutation p.I1292T 0.22 deleterious(0) benign(0.15) TCGA-BH-A5J0-01 4 146467880 146467880 A G SMAD1 Silent p.E267E 0.24 TCGA-BH-A5J0-01 4 156289820 156289820 G C MAP9 Missense_Mutation p.S209C 0.12 deleterious(0.02) benign(0.053) TCGA-BH-A5J0-01 4 4864568 4864568 G T MSX1 Nonsense_Mutation p.E204* 0.62 TCGA-BH-A5J0-01 4 70620409 70620409 G A SULT1B1 Missense_Mutation p.L86F 0.39 tolerated(0.72) benign(0.008) TCGA-BH-A5J0-01 5 1038350 1038350 G A NKD2 Silent p.V406V 0.15 TCGA-BH-A5J0-01 5 127523411 127523411 C T SLC12A2 3'UTR 0.37 TCGA-BH-A5J0-01 5 140176058 140176058 G A PCDHA2 Silent p.A503A 0.32 TCGA-BH-A5J0-01 5 146778797 146778797 C T DPYSL3 Missense_Mutation p.E491K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BH-A5J0-01 6 131925356 131925356 T C MED23 Missense_Mutation p.Y573C 0.67 deleterious(0.05) probably_damaging(0.999) TCGA-BH-A5J0-01 6 153043257 153043257 T A MYCT1 Missense_Mutation p.S193T 0.33 tolerated(0.67) benign(0.234) TCGA-BH-A5J0-01 6 153043356 153043356 G A MYCT1 Missense_Mutation p.E226K 0.43 deleterious(0) benign(0.423) TCGA-BH-A5J0-01 6 160210569 160210569 G A TCP1 5'UTR 0.58 TCGA-BH-A5J0-01 6 160477534 160477534 C T IGF2R Nonsense_Mutation p.Q925* 0.12 TCGA-BH-A5J0-01 6 18387621 18387621 C T RNF144B 5'UTR 0.47 TCGA-BH-A5J0-01 6 29393866 29393866 G A OR11A1 3'UTR 0.50 TCGA-BH-A5J0-01 6 76640797 76640797 C T IMPG1 Missense_Mutation p.E706K 0.22 tolerated(1) benign(0.006) TCGA-BH-A5J0-01 6 84884479 84884479 T G KIAA1009 Missense_Mutation p.K664N 0.16 tolerated(0.11) benign(0.148) TCGA-BH-A5J0-01 6 98472424 98472424 G A MIR2113 RNA 0.51 TCGA-BH-A5J0-01 7 31594131 31594131 G A CCDC129 Missense_Mutation p.G95E 0.27 deleterious(0.02) possibly_damaging(0.713) TCGA-BH-A5J0-01 9 108366658 108366658 G A FKTN Missense_Mutation p.E178K 0.09 deleterious(0) benign(0.029) TCGA-BH-A5J0-01 9 32427427 32427427 C T ACO1 Nonsense_Mutation p.Q493* 0.35 TCGA-BH-A5J0-01 9 33261117 33261117 C T BAG1 Missense_Mutation p.D211N 0.14 tolerated(1) benign(0.006) TCGA-BH-A5J0-01 9 73151240 73151240 C T TRPM3 Missense_Mutation p.E1585K 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BH-A5J0-01 9 77562305 77562305 G T C9orf40 3'UTR 0.13 TCGA-BH-A5J0-01 X 104464756 104464756 G A TEX13A Missense_Mutation p.S109L 0.21 tolerated(0.06) benign(0.106) TCGA-BH-A5J0-01 X 142717799 142717799 G T SLITRK4 Missense_Mutation p.P376T 0.34 deleterious(0) probably_damaging(0.996) TCGA-BH-A5J0-01 X 152228158 152228158 C G PNMA3 3'UTR 0.25 TCGA-BH-A5J0-01 X 154157956 154157956 G T F8 Missense_Mutation p.T1370N 0.37 deleterious(0.03) benign(0.111) TCGA-BH-A5J0-01 X 49857974 49857974 G A CLCN5 3'UTR 0.45 TCGA-BH-A6R8-01 10 118432355 118432355 A G HSPA12A 3'UTR 0.35 TCGA-BH-A6R8-01 11 61546787 61546787 C G MYRF Missense_Mutation p.T689R 0.31 deleterious(0) probably_damaging(1) TCGA-BH-A6R8-01 14 101490187 101490187 G A MIR299 RNA 0.70 TCGA-BH-A6R8-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.71 deleterious(0) probably_damaging(0.999) TCGA-BH-A6R8-01 15 65559014 65559014 G A PARP16 Silent p.N135N 0.48 TCGA-BH-A6R8-01 16 3106012 3106012 A T MMP25 Intron 0.15 TCGA-BH-A6R8-01 16 88499777 88499777 C T ZNF469 Missense_Mutation p.L1939F 0.53 possibly_damaging(0.557) TCGA-BH-A6R8-01 17 12028638 12028638 C T MAP2K4 Nonsense_Mutation p.R281* 0.74 TCGA-BH-A6R8-01 17 42882828 42882828 G A GJC1 Missense_Mutation p.R120C 0.73 tolerated(0.2) benign(0.336) TCGA-BH-A6R8-01 17 59483116 59483116 C T TBX2 Silent p.G535G 0.34 TCGA-BH-A6R8-01 18 8824774 8824774 C T SOGA2 Missense_Mutation p.P1089L 0.36 deleterious(0.03) possibly_damaging(0.614) TCGA-BH-A6R8-01 19 19609464 19609464 C T GATAD2A Silent p.A379A 0.45 TCGA-BH-A6R8-01 19 4324542 4324542 G C STAP2 Missense_Mutation p.L399V 0.07 deleterious_low_confidence(0.03) benign(0.139) TCGA-BH-A6R8-01 1 173454595 173454595 G T PRDX6 Missense_Mutation p.M116I 0.19 deleterious(0.04) probably_damaging(1) TCGA-BH-A6R8-01 1 22163314 22163314 C T HSPG2 Missense_Mutation p.V3446M 0.24 probably_damaging(0.922) TCGA-BH-A6R8-01 20 44845579 44845579 C T CDH22 Missense_Mutation p.E242K 0.11 tolerated(0.48) benign(0.102) TCGA-BH-A6R8-01 3 151046043 151046059 ACACACAAAGAAGACAG - P2RY13 Frame_Shift_Del p.A262Vfs*19 0.43 TCGA-BH-A6R8-01 3 191093007 191093007 G A CCDC50 Missense_Mutation p.R202K 0.35 tolerated(0.62) benign(0.001) TCGA-BH-A6R8-01 3 9798945 9798945 C T OGG1 Intron 0.52 TCGA-BH-A6R8-01 4 76507048 76507048 G A CDKL2 Missense_Mutation p.H493Y 0.38 tolerated_low_confidence(0.06) benign(0.001) TCGA-BH-A6R8-01 5 26880836 26880836 T C CDH9 3'UTR 0.24 TCGA-BH-A6R8-01 5 37299038 37299038 T C NUP155 Missense_Mutation p.H1242R 0.23 tolerated(0.63) benign(0.001) TCGA-BH-A6R8-01 6 152577864 152577864 G A SYNE1 Missense_Mutation p.P6337S 0.37 probably_damaging(0.915) TCGA-BH-A6R8-01 6 152697631 152697631 C T SYNE1 Missense_Mutation p.R3070Q 0.36 benign(0.006) TCGA-BH-A6R8-01 6 79668220 79668220 C T PHIP Missense_Mutation p.V1252M 0.43 deleterious(0) probably_damaging(0.994) TCGA-BH-A6R8-01 7 151945601 151945601 C A KMT2C Nonsense_Mutation p.E640* 0.54 TCGA-BH-A6R8-01 7 91652176 91652176 C A AKAP9 Missense_Mutation p.T1334N 0.18 benign(0.007) TCGA-BH-A6R8-01 8 41363527 41363527 G A GOLGA7 Missense_Mutation p.R121Q 0.14 deleterious(0) benign(0.005) TCGA-BH-A6R8-01 8 93026993 93026993 G C RUNX1T1 Silent p.P105P 0.18 TCGA-BH-A6R8-01 9 6986600 6986600 T A KDM4C Missense_Mutation p.N537K 0.31 tolerated(0.2) benign(0.021) TCGA-BH-A6R8-01 X 102564437 102564437 G A BEX2 3'UTR 0.13 TCGA-BH-A6R8-01 X 122624508 122624508 A - GRIA3 3'UTR 0.16 TCGA-BH-A6R8-01 X 12904291 12904291 G C TLR7 Missense_Mutation p.V222L 0.49 tolerated(0.29) benign(0.001) TCGA-BH-A6R8-01 X 135313081 135313081 C T MAP7D3 Silent p.K486K 0.18 TCGA-BH-A6R8-01 X 30739034 30739034 G C GK Missense_Mutation p.V469L 0.47 tolerated(0.07) benign(0.128) TCGA-BH-A6R8-01 X 41048699 41048699 C G USP9X Missense_Mutation p.I1316M 0.20 deleterious(0) benign(0.186) TCGA-BH-A6R8-01 X 69826839 69826839 C T TEX11 Missense_Mutation p.M655I 0.38 tolerated(0.52) benign(0) TCGA-BH-A6R8-01 X 69830355 69830355 C T TEX11 Missense_Mutation p.R612K 0.38 tolerated(0.32) benign(0.004) TCGA-BH-A6R8-01 X 70389447 70389447 G T NLGN3 Missense_Mutation p.A683S 0.16 tolerated(0.84) benign(0.001) TCGA-BH-A6R9-01 11 1272969 1272969 G A MUC5B Silent p.S4953S 0.23 TCGA-BH-A6R9-01 11 71510807 71510807 G A FAM86C1 3'UTR 0.06 TCGA-BH-A6R9-01 11 95826480 95826480 G C MAML2 Missense_Mutation p.P239A 0.25 benign(0.031) TCGA-BH-A6R9-01 12 112614445 112614445 G C HECTD4 Missense_Mutation p.P3663A 0.06 benign(0.007) TCGA-BH-A6R9-01 13 113978781 113978781 G C GRTP1 3'UTR 0.08 TCGA-BH-A6R9-01 14 22337486 22337486 T C TRAV13-1 Missense_Mutation p.S93P 0.04 deleterious(0) probably_damaging(0.997) TCGA-BH-A6R9-01 16 70219840 70219840 C G CLEC18C Missense_Mutation p.Q422E 0.08 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BH-A6R9-01 16 85127013 85127013 C T KIAA0513 3'UTR 0.10 TCGA-BH-A6R9-01 17 48191630 48191630 C T SAMD14 Missense_Mutation p.S316N 0.07 deleterious(0) possibly_damaging(0.779) TCGA-BH-A6R9-01 17 59945057 59945057 C T INTS2 Missense_Mutation p.G1159E 0.08 tolerated_low_confidence(0.99) benign(0.004) TCGA-BH-A6R9-01 19 10625361 10625361 G A S1PR5 Silent p.F109F 0.08 TCGA-BH-A6R9-01 19 44514793 44514793 G A ZNF230 Missense_Mutation p.R201H 0.10 tolerated(0.08) benign(0.013) TCGA-BH-A6R9-01 1 145748443 145748443 G C PDZK1 Missense_Mutation p.G106R 0.15 deleterious(0.02) benign(0.099) TCGA-BH-A6R9-01 1 16722373 16722373 C T SZRD1 3'UTR 0.12 TCGA-BH-A6R9-01 20 39803301 39803301 G T PLCG1 3'UTR 0.09 TCGA-BH-A6R9-01 22 17585663 17585663 C T IL17RA Silent p.S298S 0.08 TCGA-BH-A6R9-01 2 179472511 179472511 C G TTN Splice_Site p.X17668_splice 0.13 TCGA-BH-A6R9-01 2 29023101 29023101 T C PPP1CB 3'UTR 0.19 TCGA-BH-A6R9-01 2 54483148 54483148 G A TSPYL6 Silent p.I47I 0.09 TCGA-BH-A6R9-01 3 183994485 183994485 A G ECE2 Intron 0.15 TCGA-BH-A6R9-01 5 132028740 132028740 G T KIF3A 3'UTR 0.10 TCGA-BH-A6R9-01 5 31318068 31318068 T A CDH6 Intron 0.14 TCGA-BH-A6R9-01 6 21597525 21597529 TGTGT - SOX4 3'UTR 0.14 TCGA-BH-A6R9-01 7 103338471 103338471 G A RELN Silent p.V324V 0.10 TCGA-BH-A6R9-01 9 88943383 88943383 G C ZCCHC6 Missense_Mutation p.L494V 0.07 tolerated(0.11) probably_damaging(0.998) TCGA-BH-A6R9-01 X 152616099 152616099 A G ZNF275 3'UTR 0.07 TCGA-BH-A8FY-01 10 73856997 73856997 A - ASCC1 3'UTR 0.28 TCGA-BH-A8FY-01 10 97769585 97769585 C T CC2D2B Missense_Mutation p.H9Y 0.45 tolerated(0.17) benign(0.002) TCGA-BH-A8FY-01 10 97922987 97922987 C G ZNF518A RNA 0.20 TCGA-BH-A8FY-01 10 98133381 98133381 C T TLL2 Silent p.R878R 0.21 TCGA-BH-A8FY-01 11 19077055 19077055 C T MRGPRX2 Missense_Mutation p.A299T 0.21 deleterious(0.02) benign(0.017) TCGA-BH-A8FY-01 11 66469069 66469069 C A SPTBN2 Missense_Mutation p.E934D 0.40 tolerated(1) benign(0.002) TCGA-BH-A8FY-01 11 9004554 9004554 G C NRIP3 3'UTR 0.47 TCGA-BH-A8FY-01 14 30107754 30107754 T C PRKD1 Missense_Mutation p.H309R 0.33 deleterious(0.01) possibly_damaging(0.861) TCGA-BH-A8FY-01 15 23686373 23686373 C T GOLGA6L2 Missense_Mutation p.E417K 0.51 unknown(0) TCGA-BH-A8FY-01 16 68835730 68835740 CAGAAAGTTTT - CDH1 Frame_Shift_Del p.R108Hfs*56 0.65 TCGA-BH-A8FY-01 17 16221096 16221096 T G PIGL Silent p.S178S 0.32 TCGA-BH-A8FY-01 18 23873468 23873468 T C TAF4B Missense_Mutation p.I602T 0.04 deleterious(0) benign(0.424) TCGA-BH-A8FY-01 18 28586966 28586966 G A DSC3 Missense_Mutation p.P599S 0.35 tolerated(0.13) benign(0.025) TCGA-BH-A8FY-01 18 63481745 63481745 C T CDH7 Missense_Mutation p.A177V 0.35 deleterious(0) probably_damaging(0.991) TCGA-BH-A8FY-01 19 21132651 21132651 A G ZNF85 Missense_Mutation p.H444R 0.37 deleterious(0) probably_damaging(1) TCGA-BH-A8FY-01 19 36729617 36729617 C T ZNF146 3'UTR 0.32 TCGA-BH-A8FY-01 19 41292758 41292758 C G RAB4B Missense_Mutation p.L178V 0.48 tolerated(0.15) benign(0.02) TCGA-BH-A8FY-01 19 52034060 52034060 G T SIGLEC6 Missense_Mutation p.T194N 0.56 tolerated(0.08) possibly_damaging(0.644) TCGA-BH-A8FY-01 19 52729299 52729299 G A PPP2R1A 3'UTR 0.12 TCGA-BH-A8FY-01 1 117041614 117041614 T A RP5-1086K13.1 RNA 0.14 TCGA-BH-A8FY-01 1 117041615 117041615 C G RP5-1086K13.1 RNA 0.12 TCGA-BH-A8FY-01 1 151375812 151375813 - A POGZ 3'UTR 0.38 TCGA-BH-A8FY-01 1 154930404 154930404 G T PYGO2 3'UTR 0.22 TCGA-BH-A8FY-01 1 154931348 154931348 G C PYGO2 Silent p.V376V 0.08 TCGA-BH-A8FY-01 1 230379054 230379054 C T GALNT2 Missense_Mutation p.L204F 0.27 deleterious(0) probably_damaging(1) TCGA-BH-A8FY-01 1 34190964 34190964 T G CSMD2 Missense_Mutation p.Q854P 0.16 tolerated(0.07) possibly_damaging(0.808) TCGA-BH-A8FY-01 1 36201882 36201882 C T CLSPN 3'Flank 0.56 TCGA-BH-A8FY-01 1 62675824 62675824 A T L1TD1 Missense_Mutation p.I460L 0.47 tolerated(0.39) benign(0.004) TCGA-BH-A8FY-01 1 9164634 9164634 G A GPR157 Silent p.R284R 0.22 TCGA-BH-A8FY-01 20 16486390 16486390 T G KIF16B Missense_Mutation p.N326T 0.51 deleterious(0) probably_damaging(0.999) TCGA-BH-A8FY-01 22 21402456 21402456 G A AC002472.13 Intron 0.38 TCGA-BH-A8FY-01 2 179590542 179590542 T G TTN Missense_Mutation p.Q6836P 0.52 TCGA-BH-A8FY-01 2 228882776 228882776 C T SPHKAP Missense_Mutation p.E932K 0.43 deleterious(0) possibly_damaging(0.766) TCGA-BH-A8FY-01 2 241706413 241706413 G A KIF1A Missense_Mutation p.R535W 0.27 deleterious(0) probably_damaging(0.921) TCGA-BH-A8FY-01 2 86014130 86014130 C A ATOH8 3'UTR 0.44 TCGA-BH-A8FY-01 3 122274508 122274508 A T PARP9 Missense_Mutation p.D205E 0.43 tolerated(0.53) benign(0.013) TCGA-BH-A8FY-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.45 deleterious(0.02) probably_damaging(0.965) TCGA-BH-A8FY-01 3 186358855 186358855 G T FETUB Missense_Mutation p.V88L 0.33 deleterious(0) probably_damaging(1) TCGA-BH-A8FY-01 3 49200718 49200718 C T CCDC71 Silent p.K308K 0.54 TCGA-BH-A8FY-01 4 47667096 47667096 C A CORIN Missense_Mutation p.L514F 0.38 tolerated(0.25) probably_damaging(0.967) TCGA-BH-A8FY-01 5 123982796 123982796 A T ZNF608 Missense_Mutation p.L1094Q 0.81 deleterious(0) probably_damaging(0.999) TCGA-BH-A8FY-01 5 6751242 6751242 T A PAPD7 Missense_Mutation p.L401M 0.26 deleterious_low_confidence(0.04) probably_damaging(0.944) TCGA-BH-A8FY-01 5 70840889 70840889 C G BDP1 Missense_Mutation p.S2196C 0.20 tolerated(0.06) probably_damaging(0.935) TCGA-BH-A8FY-01 6 139694862 139694862 C A CITED2 Missense_Mutation p.G74W 0.16 deleterious(0) probably_damaging(0.993) TCGA-BH-A8FY-01 6 3225066 3225066 C T TUBB2B Silent p.V419V 0.51 TCGA-BH-A8FY-01 6 43409600 43409600 A T ABCC10 Missense_Mutation p.I710F 0.37 deleterious(0.01) benign(0.038) TCGA-BH-A8FY-01 6 90411396 90411396 A T MDN1 Missense_Mutation p.Y2770N 0.43 possibly_damaging(0.504) TCGA-BH-A8FY-01 7 100370967 100370967 T A ZAN Missense_Mutation p.C1829S 0.32 unknown(0) TCGA-BH-A8FY-01 7 123277477 123277477 C T ASB15 3'UTR 0.36 TCGA-BH-A8FY-01 7 138603824 138603824 G A KIAA1549 Missense_Mutation p.P183L 0.33 tolerated(1) benign(0.006) TCGA-BH-A8FY-01 7 72476426 72476426 G A STAG3L3 RNA 0.44 TCGA-BH-A8FY-01 7 84628812 84628812 G A SEMA3D Nonsense_Mutation p.R760* 0.42 TCGA-BH-A8FY-01 8 143961180 143961180 G A CYP11B1 Missense_Mutation p.S17F 0.33 tolerated(0.13) possibly_damaging(0.474) TCGA-BH-A8FY-01 8 15095106 15095106 A G SGCZ Silent p.I9I 0.38 TCGA-BH-A8FY-01 X 100242534 100242534 C T ARL13A Silent p.C214C 0.65 TCGA-BH-A8FY-01 X 140714045 140714045 G A RP1-171K16.5 RNA 0.36 TCGA-BH-A8FY-01 X 34149857 34149857 C G FAM47A Missense_Mutation p.G180A 0.23 tolerated(0.72) benign(0.218) TCGA-BH-A8FY-01 X 41000676 41000676 C T USP9X Nonsense_Mutation p.R385* 0.40 TCGA-BH-A8FY-01 X 79965042 79965042 C T BRWD3 Missense_Mutation p.R787H 0.58 deleterious(0.03) benign(0.009) TCGA-BH-A8FZ-01 10 135038334 135038334 C T KNDC1 Silent p.S1730S 0.15 TCGA-BH-A8FZ-01 10 51863817 51863817 C T FAM21A Nonsense_Mutation p.Q551* 0.11 TCGA-BH-A8FZ-01 11 27518547 27518547 T C LIN7C 3'UTR 0.12 TCGA-BH-A8FZ-01 11 36594852 36594852 A T RAG1 5'UTR 0.19 TCGA-BH-A8FZ-01 11 67051203 67051203 T C ADRBK1 Missense_Mutation p.F452L 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-BH-A8FZ-01 11 985446 985446 C T AP2A2 Nonsense_Mutation p.R276* 0.24 TCGA-BH-A8FZ-01 12 11324113 11324113 A C RP11-785H5.2 5'Flank 0.15 TCGA-BH-A8FZ-01 12 130184692 130184692 C T TMEM132D Missense_Mutation p.G211R 0.13 deleterious(0.02) benign(0.411) TCGA-BH-A8FZ-01 12 71834045 71834045 C G LGR5 Missense_Mutation p.S62C 0.12 deleterious(0.02) possibly_damaging(0.705) TCGA-BH-A8FZ-01 12 78605419 78605419 G T NAV3 3'Flank 0.26 TCGA-BH-A8FZ-01 13 20411930 20411939 GAATGACATT TC ZMYM5 Frame_Shift_Del p.N299Dfs*14 0.10 TCGA-BH-A8FZ-01 13 42703718 42703718 G C DGKH Missense_Mutation p.D112H 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-BH-A8FZ-01 13 51581144 51581144 T C GUCY1B2 RNA 0.08 TCGA-BH-A8FZ-01 14 20979048 20979048 T G RNASE10 Missense_Mutation p.F140V 0.23 deleterious(0) probably_damaging(0.999) TCGA-BH-A8FZ-01 14 94155089 94155089 G T UNC79 Missense_Mutation p.A2192S 0.20 deleterious(0.05) benign(0.223) TCGA-BH-A8FZ-01 15 78893755 78893755 A T CHRNA3 Missense_Mutation p.I410K 0.19 tolerated(0.9) benign(0.079) TCGA-BH-A8FZ-01 15 78917304 78917304 G C CHRNB4 3'UTR 0.09 TCGA-BH-A8FZ-01 16 2758258 2758258 C G KCTD5 3'UTR 0.10 TCGA-BH-A8FZ-01 16 31374670 31374670 C A ITGAX Missense_Mutation p.P562H 0.07 tolerated(0.55) benign(0.235) TCGA-BH-A8FZ-01 16 67440158 67440158 C G ZDHHC1 Missense_Mutation p.G66A 0.21 tolerated(0.11) benign(0.18) TCGA-BH-A8FZ-01 16 7762451 7762451 G A RBFOX1 3'UTR 0.16 TCGA-BH-A8FZ-01 17 21075418 21075418 C G DHRS7B Silent p.G36G 0.13 TCGA-BH-A8FZ-01 17 38179388 38179388 A G MED24 Missense_Mutation p.I749T 0.18 deleterious(0) benign(0.044) TCGA-BH-A8FZ-01 17 41290813 41290813 C G NBR2 RNA 0.17 TCGA-BH-A8FZ-01 17 67218038 67218038 T G ABCA10 Splice_Site p.X67_splice 0.07 TCGA-BH-A8FZ-01 17 7231189 7231189 G A NEURL4 Silent p.S99S 0.35 TCGA-BH-A8FZ-01 17 78081416 78081416 G A GAA Silent p.S251S 0.30 TCGA-BH-A8FZ-01 18 21125076 21125076 G C NPC1 Missense_Mutation p.L599V 0.22 tolerated(0.07) benign(0.443) TCGA-BH-A8FZ-01 18 49867062 49867062 G A DCC 5'UTR 0.20 TCGA-BH-A8FZ-01 18 5393274 5393274 C G EPB41L3 3'UTR 0.13 TCGA-BH-A8FZ-01 18 59203770 59203770 T A CDH20 Missense_Mutation p.V439D 0.17 deleterious(0) possibly_damaging(0.776) TCGA-BH-A8FZ-01 19 1383592 1383592 G T NDUFS7 5'Flank 0.27 TCGA-BH-A8FZ-01 19 18729292 18729292 T A TMEM59L Missense_Mutation p.L297H 0.07 deleterious(0) probably_damaging(0.986) TCGA-BH-A8FZ-01 19 49951301 49951301 G T PIH1D1 Missense_Mutation p.A119D 0.18 deleterious(0) probably_damaging(0.999) TCGA-BH-A8FZ-01 1 150686595 150686595 A G HORMAD1 Missense_Mutation p.M82T 0.15 deleterious(0.04) benign(0.12) TCGA-BH-A8FZ-01 1 153730134 153730134 C G INTS3 Missense_Mutation p.D348E 0.14 deleterious(0) probably_damaging(0.996) TCGA-BH-A8FZ-01 1 155258167 155258168 - A HCN3 Frame_Shift_Ins p.P748Tfs*14 0.12 TCGA-BH-A8FZ-01 1 158656325 158656325 A T SPTA1 5'UTR 0.13 TCGA-BH-A8FZ-01 1 179013004 179013004 G C FAM20B Missense_Mutation p.V8L 0.13 tolerated(0.05) benign(0.118) TCGA-BH-A8FZ-01 1 201973573 201973573 G C RNPEP Missense_Mutation p.K581N 0.14 deleterious(0.01) possibly_damaging(0.876) TCGA-BH-A8FZ-01 1 203153751 203153751 G T CHI3L1 Missense_Mutation p.N89K 0.20 tolerated(0.95) benign(0.003) TCGA-BH-A8FZ-01 1 213415306 213415306 T C RPS6KC1 Silent p.N829N 0.30 TCGA-BH-A8FZ-01 1 214557576 214557576 T A PTPN14 Missense_Mutation p.E541V 0.10 deleterious(0) probably_damaging(0.998) TCGA-BH-A8FZ-01 1 230458512 230458512 T C PGBD5 3'Flank 0.09 TCGA-BH-A8FZ-01 1 230458513 230458513 C G PGBD5 3'Flank 0.10 TCGA-BH-A8FZ-01 1 3328314 3328314 T A PRDM16 Missense_Mutation p.F518Y 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-BH-A8FZ-01 1 84864297 84864297 T C DNASE2B Missense_Mutation p.L17P 0.23 deleterious(0) possibly_damaging(0.879) TCGA-BH-A8FZ-01 1 91182581 91182581 C T BARHL2 Missense_Mutation p.V58I 0.21 tolerated_low_confidence(0.09) probably_damaging(0.959) TCGA-BH-A8FZ-01 1 91404694 91404694 C A ZNF644 Missense_Mutation p.L739F 0.15 tolerated(0.15) benign(0.004) TCGA-BH-A8FZ-01 20 944687 944687 G A RSPO4 Silent p.G162G 0.23 TCGA-BH-A8FZ-01 21 43912959 43912959 A - RSPH1 Frame_Shift_Del p.F61Lfs*82 0.16 TCGA-BH-A8FZ-01 21 47250223 47250223 T G PCBP3 Intron 0.27 TCGA-BH-A8FZ-01 22 20079101 20079101 C G DGCR8 Missense_Mutation p.P484A 0.14 deleterious(0.02) probably_damaging(0.942) TCGA-BH-A8FZ-01 22 24837726 24837726 C G ADORA2A 3'UTR 0.25 TCGA-BH-A8FZ-01 2 167128985 167128985 G A SCN9A Missense_Mutation p.A1081V 0.14 deleterious(0) probably_damaging(0.998) TCGA-BH-A8FZ-01 2 167128986 167128986 C A SCN9A Missense_Mutation p.A1081S 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-BH-A8FZ-01 2 167285702 167285702 T C SCN7A Missense_Mutation p.E892G 0.11 tolerated(0.06) benign(0.032) TCGA-BH-A8FZ-01 2 172641936 172641936 G A SLC25A12 Missense_Mutation p.P629S 0.16 tolerated(0.16) probably_damaging(1) TCGA-BH-A8FZ-01 2 55402837 55402842 TTTATA CTTCTTACTCT CLHC1 3'UTR 0.35 TCGA-BH-A8FZ-01 2 64819537 64819537 C T AFTPH 3'UTR 0.13 TCGA-BH-A8FZ-01 3 126061680 126061680 A G KLF15 3'UTR 0.06 TCGA-BH-A8FZ-01 3 142984728 142984728 C T SLC9A9 3'UTR 0.28 TCGA-BH-A8FZ-01 3 185929601 185929601 C T DGKG Missense_Mutation p.D634N 0.19 deleterious(0.02) possibly_damaging(0.853) TCGA-BH-A8FZ-01 3 42251777 42251777 C T TRAK1 Intron 0.11 TCGA-BH-A8FZ-01 3 50596372 50596372 G A C3orf18 3'UTR 0.07 TCGA-BH-A8FZ-01 4 11401090 11401090 G A HS3ST1 Silent p.R180R 0.12 TCGA-BH-A8FZ-01 4 142147973 142147973 T C ZNF330 Silent p.G88G 0.14 TCGA-BH-A8FZ-01 4 175429178 175429178 T C HPGD Intron 0.28 TCGA-BH-A8FZ-01 4 85696267 85696267 G C WDFY3 Missense_Mutation p.L1515V 0.23 deleterious(0.02) possibly_damaging(0.893) TCGA-BH-A8FZ-01 5 110428054 110428054 T G WDR36 Missense_Mutation p.L23R 0.27 tolerated_low_confidence(0.41) benign(0.004) TCGA-BH-A8FZ-01 5 161113291 161113291 G A GABRA6 Missense_Mutation p.V32I 0.25 tolerated(1) benign(0.003) TCGA-BH-A8FZ-01 5 37187522 37187522 G A C5orf42 Silent p.I1358I 0.17 TCGA-BH-A8FZ-01 5 94772596 94772596 C A FAM81B Missense_Mutation p.N293K 0.15 tolerated(0.25) benign(0.407) TCGA-BH-A8FZ-01 6 150570286 150570286 C A PPP1R14C 3'UTR 0.20 TCGA-BH-A8FZ-01 6 3019763 3019763 C T NQO2 Silent p.S190S 0.17 TCGA-BH-A8FZ-01 6 37180169 37180169 C A TMEM217 3'UTR 0.17 TCGA-BH-A8FZ-01 6 85457792 85457792 G T TBX18 Missense_Mutation p.S262Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-BH-A8FZ-01 7 113558656 113558656 T G PPP1R3A Silent p.S132S 0.14 TCGA-BH-A8FZ-01 7 86823246 86823246 C G DMTF1 Missense_Mutation p.P619R 0.18 deleterious_low_confidence(0.02) benign(0.064) TCGA-BH-A8FZ-01 8 110457319 110457319 T A PKHD1L1 Missense_Mutation p.F1741I 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-BH-A8FZ-01 8 133975315 133975338 AGCAGGTACTGACCCCCAAACCTT GATG TG Splice_Site p.X1848_splice 0.18 TCGA-BH-A8FZ-01 8 63659544 63659544 A C NKAIN3 Missense_Mutation p.E109D 0.05 tolerated(0.12) probably_damaging(0.998) TCGA-BH-A8FZ-01 8 73850021 73850021 G A KCNB2 Missense_Mutation p.D811N 0.11 deleterious_low_confidence(0) benign(0.014) TCGA-BH-A8FZ-01 8 77763473 77763473 C T ZFHX4 Missense_Mutation p.A1439V 0.12 possibly_damaging(0.682) TCGA-BH-A8FZ-01 9 130605497 130605497 A G ENG Missense_Mutation p.L32P 0.21 deleterious(0) probably_damaging(0.999) TCGA-BH-A8FZ-01 9 33311114 33311114 C G NFX1 Missense_Mutation p.P463A 0.17 deleterious(0.01) possibly_damaging(0.817) TCGA-BH-A8FZ-01 9 73398958 73398958 A G TRPM3 Intron 0.20 TCGA-BH-A8FZ-01 X 110497621 110497621 T A CAPN6 Missense_Mutation p.D59V 0.13 deleterious(0.02) probably_damaging(0.983) TCGA-BH-A8FZ-01 X 153217075 153217075 T A HCFC1 Missense_Mutation p.T1782S 0.18 tolerated_low_confidence(0.1) probably_damaging(0.931) TCGA-BH-A8FZ-01 X 46510560 46510560 G A SLC9A7 Silent p.F444F 0.10 TCGA-BH-A8FZ-01 X 49029524 49029524 T G PLP2 Missense_Mutation p.Y49D 0.07 deleterious(0) probably_damaging(0.969) TCGA-BH-A8FZ-01 X 49029525 49029525 A G PLP2 Missense_Mutation p.Y49C 0.07 deleterious(0) probably_damaging(0.984) TCGA-BH-A8FZ-01 X 49029528 49029528 C A PLP2 Missense_Mutation p.S50Y 0.07 deleterious(0.05) benign(0.16) TCGA-BH-A8FZ-01 X 64726986 64726986 G A ZC3H12B 3'UTR 0.25 TCGA-BH-A8FZ-01 X 70386912 70386912 C A NLGN3 Missense_Mutation p.A322D 0.13 deleterious(0) probably_damaging(0.97) TCGA-BH-A8FZ-01 X 79279631 79279631 C T TBX22 Silent p.I142I 0.22 TCGA-BH-A8G0-01 11 32739628 32739628 C T CCDC73 Nonsense_Mutation p.W67* 0.10 TCGA-BH-A8G0-01 11 76918372 76918372 C T MYO7A Silent p.F1927F 0.09 TCGA-BH-A8G0-01 14 64488076 64488076 A G SYNE2 Missense_Mutation p.K1732R 0.17 benign(0.006) TCGA-BH-A8G0-01 16 2160098 2160098 G A PKD1 Silent p.A1690A 0.11 TCGA-BH-A8G0-01 19 16630095 16630095 C T CHERP Missense_Mutation p.V876I 0.06 tolerated(0.37) unknown(0) TCGA-BH-A8G0-01 19 43969721 43969721 C T LYPD3 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BH-A8G0-01 1 235506541 235506541 C A GGPS1 3'UTR 0.10 TCGA-BH-A8G0-01 1 236978918 236978918 A G MTR Silent p.A208A 0.11 TCGA-BH-A8G0-01 1 26090377 26090377 C T MAN1C1 Missense_Mutation p.R354C 0.09 deleterious(0) probably_damaging(0.996) TCGA-BH-A8G0-01 1 26440851 26440851 A G PDIK1L Missense_Mutation p.S18G 0.17 deleterious(0.01) possibly_damaging(0.803) TCGA-BH-A8G0-01 1 28209453 28209453 C T THEMIS2 Missense_Mutation p.R540W 0.16 deleterious(0) probably_damaging(1) TCGA-BH-A8G0-01 1 32793250 32793250 A G HDAC1 Missense_Mutation p.E203G 0.11 deleterious(0) benign(0.396) TCGA-BH-A8G0-01 1 9075283 9075283 G A SLC2A7 Missense_Mutation p.A203V 0.10 tolerated(0.06) benign(0.327) TCGA-BH-A8G0-01 21 47422449 47422449 C T COL6A1 Silent p.S753S 0.19 TCGA-BH-A8G0-01 2 137814639 137814639 A G THSD7B Silent p.G263G 0.14 TCGA-BH-A8G0-01 7 104753905 104753905 C T KMT2E 3'UTR 0.12 TCGA-BH-A8G0-01 X 102471398 102471398 A G BEX4 Missense_Mutation p.Q106R 0.12 tolerated(0.85) benign(0.026) TCGA-BH-AB28-01 10 8111513 8111514 - GG GATA3 Frame_Shift_Ins p.D336Gfs*21 0.31 TCGA-BH-AB28-01 11 112020826 112020826 T C IL18 Silent p.L65L 0.19 TCGA-BH-AB28-01 11 112085593 112085593 T C BCO2 Missense_Mutation p.F481L 0.05 tolerated(0.08) benign(0.381) TCGA-BH-AB28-01 11 118452164 118452164 C T ARCN1 Silent p.I69I 0.30 TCGA-BH-AB28-01 11 71155238 71155238 G A DHCR7 Missense_Mutation p.A41V 0.10 tolerated(0.73) benign(0.013) TCGA-BH-AB28-01 11 8252000 8252000 C T LMO1 Missense_Mutation p.G26D 0.09 deleterious(0) probably_damaging(0.993) TCGA-BH-AB28-01 12 49427049 49427049 C T KMT2D Silent p.Q3813Q 0.05 TCGA-BH-AB28-01 13 20660940 20660940 A T ZMYM2 3'UTR 0.12 TCGA-BH-AB28-01 13 50275033 50275034 - T KPNA3 3'UTR 0.33 TCGA-BH-AB28-01 13 86370398 86370398 A G SLITRK6 Silent p.N82N 0.20 TCGA-BH-AB28-01 14 80329273 80329273 G T NRXN3 3'Flank 0.14 TCGA-BH-AB28-01 14 92268648 92268648 A C TC2N Missense_Mutation p.L140W 0.27 tolerated(0.05) possibly_damaging(0.806) TCGA-BH-AB28-01 15 24926955 24926956 - AT NPAP1 3'UTR 0.11 TCGA-BH-AB28-01 16 2547100 2547100 C T RP11-20I23.1 Silent p.T317T 0.43 TCGA-BH-AB28-01 16 68846055 68846057 CCT - CDH1 In_Frame_Del p.L343del 0.43 TCGA-BH-AB28-01 16 845995 845995 C A CHTF18 Missense_Mutation p.L792M 0.31 deleterious(0) probably_damaging(0.996) TCGA-BH-AB28-01 17 3656666 3656666 G A ITGAE Missense_Mutation p.T529M 0.26 deleterious(0) possibly_damaging(0.646) TCGA-BH-AB28-01 18 11851617 11851617 T A CHMP1B Missense_Mutation p.I36N 0.05 deleterious(0) benign(0.315) TCGA-BH-AB28-01 19 4891366 4891366 G A ARRDC5 Missense_Mutation p.R241W 0.18 deleterious(0) probably_damaging(0.958) TCGA-BH-AB28-01 19 50774730 50774730 C T MYH14 Missense_Mutation p.T1033M 0.33 deleterious(0) probably_damaging(0.969) TCGA-BH-AB28-01 1 113253421 113253421 A C PPM1J Missense_Mutation p.L388R 0.12 deleterious(0) probably_damaging(1) TCGA-BH-AB28-01 1 150547483 150547484 CA - MCL1 3'UTR 0.48 TCGA-BH-AB28-01 1 162337658 162337658 G A NOS1AP 3'UTR 0.15 TCGA-BH-AB28-01 1 186291478 186291478 G A TPR Missense_Mutation p.R2145C 0.13 probably_damaging(0.991) TCGA-BH-AB28-01 1 204093768 204093768 G A SOX13 Splice_Site p.X459_splice 0.38 TCGA-BH-AB28-01 1 248487167 248487167 C T OR2M7 Missense_Mutation p.R235H 0.13 tolerated(0.39) benign(0.002) TCGA-BH-AB28-01 1 67133216 67133216 C T SGIP1 Missense_Mutation p.R159C 0.24 deleterious(0) probably_damaging(0.982) TCGA-BH-AB28-01 20 32256308 32256308 G A ACTL10 3'UTR 0.13 TCGA-BH-AB28-01 20 34025551 34025552 - G GDF5 Frame_Shift_Ins p.L53Pfs*41 0.25 TCGA-BH-AB28-01 20 44600812 44600812 C G ZNF335 5'Flank 0.29 TCGA-BH-AB28-01 20 57769251 57769251 G A ZNF831 Silent p.T1059T 0.19 TCGA-BH-AB28-01 21 34444433 34444433 G A OLIG1 3'UTR 0.37 TCGA-BH-AB28-01 22 42526619 42526619 C T CYP2D6 Missense_Mutation p.D59N 0.12 tolerated(0.57) benign(0.001) TCGA-BH-AB28-01 2 174774449 174774449 C T SP3 3'UTR 0.19 TCGA-BH-AB28-01 2 220250714 220250714 A C DNPEP Missense_Mutation p.F189C 0.19 deleterious(0) probably_damaging(1) TCGA-BH-AB28-01 2 77746478 77746478 G A LRRTM4 Missense_Mutation p.P173S 0.28 deleterious(0) probably_damaging(1) TCGA-BH-AB28-01 3 107762215 107762215 A T CD47 3'Flank 0.03 TCGA-BH-AB28-01 3 142413372 142413372 C T PLS1 Silent p.Y413Y 0.25 TCGA-BH-AB28-01 3 169663089 169663089 C A RP11-379K17.4 RNA 0.11 TCGA-BH-AB28-01 4 11401564 11401564 G A HS3ST1 Silent p.P22P 0.17 TCGA-BH-AB28-01 4 70346363 70346363 T C UGT2B4 Missense_Mutation p.K526E 0.28 deleterious(0) possibly_damaging(0.899) TCGA-BH-AB28-01 5 140590002 140590002 C T PCDHB12 Missense_Mutation p.A508V 0.28 deleterious_low_confidence(0.01) benign(0.114) TCGA-BH-AB28-01 5 56177517 56177518 - C MAP3K1 Frame_Shift_Ins p.H832Pfs*31 0.25 TCGA-BH-AB28-01 6 73110924 73110925 - T RIMS1 3'Flank 0.09 TCGA-BH-AB28-01 7 122342850 122342850 C T RNF148 5'UTR 0.28 TCGA-BH-AB28-01 7 152497690 152497690 G A ACTR3B Missense_Mutation p.D59N 0.20 deleterious(0.04) possibly_damaging(0.494) TCGA-BH-AB28-01 7 94293244 94293244 A T PEG10 Missense_Mutation p.T126S 0.20 tolerated(0.29) benign(0.359) TCGA-BH-AB28-01 8 70617271 70617271 T G SLCO5A1 Silent p.T539T 0.23 TCGA-BH-AB28-01 9 138387161 138387161 G T C9orf116 3'UTR 0.16 TCGA-BH-AB28-01 9 139371732 139371732 T A SEC16A Silent p.G112G 0.42 TCGA-BH-AB28-01 X 55289701 55289701 C T PAGE3 Missense_Mutation p.G59E 0.28 tolerated(0.12) probably_damaging(0.993) TCGA-C8-A12K-01 10 118423615 118423615 A G C10orf82 3'UTR 0.29 TCGA-C8-A12K-01 10 12203031 12203031 C T SEC61A2 Missense_Mutation p.H360Y 0.05 tolerated(0.06) probably_damaging(0.921) TCGA-C8-A12K-01 10 13237166 13237166 C T MCM10 Missense_Mutation p.T625M 0.24 tolerated(0.31) benign(0.067) TCGA-C8-A12K-01 10 70737415 70737415 G A DDX21 Missense_Mutation p.D625N 0.27 deleterious(0.02) benign(0.009) TCGA-C8-A12K-01 11 101849081 101849081 C T KIAA1377 Missense_Mutation p.S950F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A12K-01 11 125547873 125547873 G A ACRV1 Silent p.L124L 0.05 TCGA-C8-A12K-01 11 128709242 128709242 C A KCNJ1 Missense_Mutation p.E318D 0.47 deleterious(0) probably_damaging(0.988) TCGA-C8-A12K-01 11 17121503 17121503 C T PIK3C2A Missense_Mutation p.G1341E 0.40 deleterious(0) probably_damaging(0.996) TCGA-C8-A12K-01 11 32956801 32956801 G A QSER1 Missense_Mutation p.V1204M 0.20 tolerated(0.14) benign(0.316) TCGA-C8-A12K-01 11 33108591 33108591 C G CSTF3 Missense_Mutation p.E580Q 0.24 tolerated(0.4) benign(0.043) TCGA-C8-A12K-01 11 5373049 5373049 T A OR51B6 Silent p.T104T 0.20 TCGA-C8-A12K-01 11 5624607 5624607 T A TRIM6 Missense_Mutation p.L50Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-C8-A12K-01 11 59992543 59992543 C T MS4A4E Intron 0.11 TCGA-C8-A12K-01 11 61068381 61068382 CG - DDB1 Frame_Shift_Del p.R1080Efs*12 0.35 TCGA-C8-A12K-01 11 62348589 62348589 C A TUT1 Nonsense_Mutation p.E265* 0.27 TCGA-C8-A12K-01 11 62598707 62598707 C G STX5 Silent p.P3P 0.24 TCGA-C8-A12K-01 11 65767848 65767848 T C EIF1AD Missense_Mutation p.T5A 0.23 deleterious(0) possibly_damaging(0.782) TCGA-C8-A12K-01 11 6635725 6635725 G A TPP1 3'UTR 0.06 TCGA-C8-A12K-01 11 89867862 89867862 T G NAALAD2 5'UTR 0.24 TCGA-C8-A12K-01 12 11091327 11091327 T G TAS2R14 Missense_Mutation p.R160S 0.28 deleterious(0.01) benign(0.102) TCGA-C8-A12K-01 12 116424196 116424196 C T MED13L Missense_Mutation p.E1405K 0.03 deleterious(0) unknown(0) TCGA-C8-A12K-01 12 1920881 1920881 C A CACNA2D4 Missense_Mutation p.V854F 0.17 tolerated(0.39) benign(0.166) TCGA-C8-A12K-01 12 50492871 50492871 T A SMARCD1 3'UTR 0.33 TCGA-C8-A12K-01 12 56567506 56567506 C G SMARCC2 Missense_Mutation p.V542L 0.34 tolerated(0.25) benign(0.097) TCGA-C8-A12K-01 12 62775318 62775318 G C USP15 Missense_Mutation p.K321N 0.27 tolerated(0.07) benign(0.035) TCGA-C8-A12K-01 12 665730 665730 G A B4GALNT3 Missense_Mutation p.R693H 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-C8-A12K-01 12 95603690 95603690 T A FGD6 Missense_Mutation p.K457M 0.36 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-C8-A12K-01 13 29041151 29041151 T A FLT1 Missense_Mutation p.T93S 0.06 tolerated(0.28) possibly_damaging(0.734) TCGA-C8-A12K-01 14 102698065 102698065 A G MOK Silent p.I320I 0.41 TCGA-C8-A12K-01 14 55852815 55852815 C G ATG14 Splice_Site p.X137_splice 0.46 TCGA-C8-A12K-01 15 29346952 29346952 G C APBA2 Missense_Mutation p.E289Q 0.35 tolerated_low_confidence(0.3) benign(0.011) TCGA-C8-A12K-01 15 40661944 40661944 C G DISP2 Missense_Mutation p.P1211A 0.21 tolerated(0.34) benign(0.281) TCGA-C8-A12K-01 15 52011797 52011797 T C SCG3 3'UTR 0.42 TCGA-C8-A12K-01 15 64367694 64367694 C G FAM96A Missense_Mutation p.D128H 0.34 tolerated(0.08) probably_damaging(0.996) TCGA-C8-A12K-01 15 72454321 72454321 A T GRAMD2 3'UTR 0.06 TCGA-C8-A12K-01 15 74472480 74472480 G A STRA6 Missense_Mutation p.P688S 0.27 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 15 74472481 74472481 G C STRA6 Missense_Mutation p.N687K 0.27 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 15 81046555 81046555 C A ABHD17C Silent p.V278V 0.25 TCGA-C8-A12K-01 15 90768921 90768921 G A SEMA4B Missense_Mutation p.G517D 0.11 deleterious(0) possibly_damaging(0.736) TCGA-C8-A12K-01 15 91436639 91436639 C G FES Missense_Mutation p.I680M 0.14 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 15 99892643 99892643 C G LRRC28 Missense_Mutation p.S221C 0.03 tolerated(0.1) probably_damaging(0.962) TCGA-C8-A12K-01 16 14645942 14645942 C G PARN Missense_Mutation p.Q472H 0.05 tolerated(0.31) benign(0.003) TCGA-C8-A12K-01 16 2158339 2158339 C G PKD1 Missense_Mutation p.D2277H 0.04 probably_damaging(0.998) TCGA-C8-A12K-01 16 24564837 24564837 G C RBBP6 Missense_Mutation p.D103H 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-C8-A12K-01 16 2712100 2712100 C T ERVK13-1 RNA 0.07 TCGA-C8-A12K-01 16 28842316 28842316 C T ATXN2L Missense_Mutation p.P415L 0.27 deleterious(0.01) probably_damaging(0.961) TCGA-C8-A12K-01 16 31502124 31502124 C T C16orf58 3'UTR 0.24 TCGA-C8-A12K-01 16 3297157 3297157 G - MEFV Frame_Shift_Del p.S483Hfs*30 0.29 TCGA-C8-A12K-01 16 46696975 46696975 G C VPS35 Missense_Mutation p.L583V 0.08 deleterious(0) probably_damaging(0.96) TCGA-C8-A12K-01 16 5038149 5038149 G T SEC14L5 Splice_Site p.X72_splice 0.23 TCGA-C8-A12K-01 16 67159863 67159863 C G C16orf70 Missense_Mutation p.S50C 0.06 deleterious(0.04) benign(0.013) TCGA-C8-A12K-01 16 67942876 67942876 C G PSKH1 Nonsense_Mutation p.S75* 0.23 TCGA-C8-A12K-01 16 816661 816661 C T MSLN Silent p.L416L 0.13 TCGA-C8-A12K-01 17 15450400 15450400 C G TVP23C Missense_Mutation p.K101N 0.26 tolerated(0.09) benign(0.261) TCGA-C8-A12K-01 17 26961913 26961915 TCA - KIAA0100 In_Frame_Del p.M897del 0.15 TCGA-C8-A12K-01 17 27424325 27424325 C T MYO18A Silent p.V1382V 0.20 TCGA-C8-A12K-01 17 34313691 34313692 GG T CTB-186H2.3 Frame_Shift_Del p.W46Lfs*28 0.23 TCGA-C8-A12K-01 17 46023746 46023746 A T PNPO Nonsense_Mutation p.K202* 0.49 TCGA-C8-A12K-01 17 58531762 58531762 T C APPBP2 Silent p.S413S 0.54 TCGA-C8-A12K-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.38 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 17 78306165 78306165 C T RNF213 Silent p.L1293L 0.15 TCGA-C8-A12K-01 18 10671315 10671315 G A PIEZO2 3'Flank 0.27 TCGA-C8-A12K-01 18 34298590 34298590 T G FHOD3 Missense_Mutation p.L935R 0.37 deleterious(0) probably_damaging(0.946) TCGA-C8-A12K-01 18 52901809 52901809 C A TCF4 Missense_Mutation p.D588Y 0.16 deleterious(0) probably_damaging(0.971) TCGA-C8-A12K-01 18 55336433 55336433 C G ATP8B1 Intron 0.17 TCGA-C8-A12K-01 18 6868167 6868167 C A ARHGAP28 Missense_Mutation p.P90T 0.21 tolerated(0.14) benign(0.06) TCGA-C8-A12K-01 18 6995416 6995416 C G LAMA1 Missense_Mutation p.K1612N 0.03 tolerated(0.2) benign(0.288) TCGA-C8-A12K-01 19 10662976 10662976 G C ATG4D Missense_Mutation p.E406D 0.19 tolerated(0.11) benign(0.211) TCGA-C8-A12K-01 19 1207146 1207146 G C STK11 Missense_Mutation p.K78N 0.10 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 19 14884859 14884859 G A EMR2 Silent p.A30A 0.23 TCGA-C8-A12K-01 19 15073152 15073152 C G SLC1A6 Missense_Mutation p.K199N 0.06 deleterious(0) probably_damaging(0.995) TCGA-C8-A12K-01 19 38384088 38384088 T C WDR87 Missense_Mutation p.E713G 0.05 probably_damaging(0.968) TCGA-C8-A12K-01 19 3852528 3852528 G C ZFR2 Intron 0.34 TCGA-C8-A12K-01 19 39805332 39805333 CA - LRFN1 Frame_Shift_Del p.L215Rfs*9 0.25 TCGA-C8-A12K-01 19 57922729 57922729 T C ZNF17 5'UTR 0.32 TCGA-C8-A12K-01 19 58102405 58102405 G T ZIK1 Missense_Mutation p.C409F 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 19 8953926 8953926 C T MBD3L1 Missense_Mutation p.P191L 0.40 tolerated(0.15) probably_damaging(0.946) TCGA-C8-A12K-01 1 117122205 117122205 G A IGSF3 Missense_Mutation p.P1068L 0.27 tolerated(0.34) benign(0.028) TCGA-C8-A12K-01 1 151261887 151261887 C G ZNF687 Silent p.V835V 0.06 TCGA-C8-A12K-01 1 160309729 160309729 G C COPA Missense_Mutation p.F66L 0.05 tolerated(0.18) possibly_damaging(0.683) TCGA-C8-A12K-01 1 16101393 16101393 C G FBLIM1 Missense_Mutation p.S331C 0.04 deleterious_low_confidence(0.01) benign(0) TCGA-C8-A12K-01 1 165651436 165651436 C G ALDH9A1 Missense_Mutation p.R167T 0.09 deleterious(0.01) benign(0.168) TCGA-C8-A12K-01 1 179054768 179054768 G A TOR3A Missense_Mutation p.E127K 0.24 tolerated(0.46) benign(0.097) TCGA-C8-A12K-01 1 180241004 180241004 G A LHX4 Missense_Mutation p.R214H 0.14 deleterious(0) probably_damaging(0.995) TCGA-C8-A12K-01 1 182853847 182853847 C T DHX9 Silent p.I1120I 0.22 TCGA-C8-A12K-01 1 201869820 201869820 A C LMOD1 Missense_Mutation p.D107E 0.04 benign(0.153) TCGA-C8-A12K-01 1 206634438 206634438 G C SRGAP2 Missense_Mutation p.Q877H 0.11 deleterious(0) probably_damaging(0.996) TCGA-C8-A12K-01 1 212798330 212798330 C T FAM71A Silent p.Y37Y 0.18 TCGA-C8-A12K-01 1 216138777 216138777 A C USH2A Missense_Mutation p.N2334K 0.19 benign(0.01) TCGA-C8-A12K-01 1 22084186 22084186 G T USP48 Silent p.I75I 0.18 TCGA-C8-A12K-01 1 222898868 222898868 T G BROX Missense_Mutation p.V184G 0.03 deleterious(0.01) possibly_damaging(0.713) TCGA-C8-A12K-01 1 227227928 227227928 G A CDC42BPA Missense_Mutation p.H1000Y 0.03 deleterious(0.01) probably_damaging(0.997) TCGA-C8-A12K-01 1 229683321 229683321 C T ABCB10 Silent p.L282L 0.06 TCGA-C8-A12K-01 1 238090462 238090462 C G RP11-193H5.1 RNA 0.16 TCGA-C8-A12K-01 1 37979110 37979110 G C MEAF6 Missense_Mutation p.I40M 0.20 deleterious(0.03) benign(0.219) TCGA-C8-A12K-01 1 45224923 45224923 G A KIF2C Missense_Mutation p.D424N 0.07 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 1 46752022 46752022 G C LRRC41 Missense_Mutation p.I169M 0.19 deleterious(0.01) possibly_damaging(0.862) TCGA-C8-A12K-01 1 85136915 85136915 A T SSX2IP 5'UTR 0.26 TCGA-C8-A12K-01 1 89597928 89597928 T A GBP7 Silent p.A607A 0.03 TCGA-C8-A12K-01 1 9034817 9034818 - AAA CA6 3'Flank 0.38 TCGA-C8-A12K-01 20 45021783 45021783 C A ELMO2 Splice_Site p.X65_splice 0.22 TCGA-C8-A12K-01 21 44430206 44430206 G A PKNOX1 Missense_Mutation p.E75K 0.04 deleterious(0) probably_damaging(0.985) TCGA-C8-A12K-01 22 20760374 20760374 C G ZNF74 Missense_Mutation p.L351V 0.32 tolerated(0.09) possibly_damaging(0.861) TCGA-C8-A12K-01 22 31486977 31486977 C A SMTN Nonsense_Mutation p.S323* 0.28 TCGA-C8-A12K-01 22 38536013 38536013 G A PLA2G6 Missense_Mutation p.S258L 0.24 deleterious(0.03) benign(0.001) TCGA-C8-A12K-01 22 46509603 46509603 G A FLJ27365 3'UTR 0.04 TCGA-C8-A12K-01 2 113518307 113518307 G C CKAP2L Missense_Mutation p.Q47E 0.15 deleterious(0.02) benign(0.001) TCGA-C8-A12K-01 2 144903229 144903229 A T GTDC1 Missense_Mutation p.I86N 0.07 deleterious(0) probably_damaging(0.974) TCGA-C8-A12K-01 2 155265555 155265555 A T GALNT13 Missense_Mutation p.K452N 0.25 tolerated(0.39) benign(0.251) TCGA-C8-A12K-01 2 179255921 179255921 C G OSBPL6 Missense_Mutation p.S833C 0.05 deleterious(0) probably_damaging(0.93) TCGA-C8-A12K-01 2 203661619 203661619 C G ICA1L Missense_Mutation p.E327Q 0.25 tolerated(0.29) benign(0.043) TCGA-C8-A12K-01 2 211512678 211512678 C G CPS1 Missense_Mutation p.T1084R 0.26 deleterious(0) probably_damaging(0.999) TCGA-C8-A12K-01 2 227662969 227662969 C T IRS1 Silent p.E162E 0.18 TCGA-C8-A12K-01 2 241808313 241808313 C G AGXT Missense_Mutation p.P11A 0.34 deleterious(0) probably_damaging(0.966) TCGA-C8-A12K-01 2 242194990 242194990 C G HDLBP Missense_Mutation p.K293N 0.10 tolerated(0.05) benign(0.032) TCGA-C8-A12K-01 2 27800049 27800049 C T C2orf16 Missense_Mutation p.P204S 0.06 tolerated(0.19) benign(0.332) TCGA-C8-A12K-01 2 31621458 31621458 C G XDH Missense_Mutation p.E138D 0.20 tolerated(0.72) benign(0.06) TCGA-C8-A12K-01 2 88409999 88409999 C G SMYD1 Missense_Mutation p.P481A 0.29 tolerated_low_confidence(0.77) benign(0.001) TCGA-C8-A12K-01 3 109028044 109028044 T C DPPA2 Silent p.Q105Q 0.07 TCGA-C8-A12K-01 3 150321284 150321284 T A SELT Silent p.I45I 0.34 TCGA-C8-A12K-01 3 184003269 184003269 C A ECE2 Silent p.I502I 0.20 TCGA-C8-A12K-01 3 187387031 187387031 G A SST Missense_Mutation p.S58F 0.07 deleterious(0) possibly_damaging(0.549) TCGA-C8-A12K-01 3 189704666 189704666 C G LEPREL1 Missense_Mutation p.D367H 0.10 deleterious(0.01) possibly_damaging(0.764) TCGA-C8-A12K-01 3 47461090 47461090 T A SCAP Silent p.G556G 0.07 TCGA-C8-A12K-01 3 52850986 52850986 G A ITIH4 Silent p.H795H 0.36 TCGA-C8-A12K-01 3 86996064 86996064 C G VGLL3 3'UTR 0.30 TCGA-C8-A12K-01 4 186366479 186366479 C G CCDC110 3'UTR 0.26 TCGA-C8-A12K-01 4 21305527 21305527 C T KCNIP4 Intron 0.05 TCGA-C8-A12K-01 4 47597676 47597676 C T CORIN 3'UTR 0.41 TCGA-C8-A12K-01 4 6865611 6865611 T G KIAA0232 Missense_Mutation p.S1168A 0.11 deleterious(0.02) benign(0.204) TCGA-C8-A12K-01 4 7044544 7044544 C A CCDC96 Missense_Mutation p.G41V 0.31 tolerated_low_confidence(0.26) unknown(0) TCGA-C8-A12K-01 5 112179630 112179630 G C APC Missense_Mutation p.R2780T 0.12 probably_damaging(0.999) TCGA-C8-A12K-01 5 113740461 113740461 G C KCNN2 Missense_Mutation p.K303N 0.11 deleterious(0) probably_damaging(0.95) TCGA-C8-A12K-01 5 127686601 127686601 A T FBN2 Missense_Mutation p.L924H 0.33 deleterious(0) probably_damaging(0.989) TCGA-C8-A12K-01 5 137284667 137284667 T C FAM13B Missense_Mutation p.R691G 0.31 tolerated(0.37) possibly_damaging(0.9) TCGA-C8-A12K-01 6 111498732 111498732 C A SLC16A10 Missense_Mutation p.S269Y 0.05 deleterious(0.04) possibly_damaging(0.642) TCGA-C8-A12K-01 6 123038978 123038978 T C PKIB Silent p.S20S 0.35 TCGA-C8-A12K-01 6 24850064 24850064 C G FAM65B Missense_Mutation p.G305R 0.29 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 6 36076428 36076428 A G MAPK14 3'UTR 0.46 TCGA-C8-A12K-01 6 36103593 36103593 G A MAPK13 Silent p.E124E 0.20 TCGA-C8-A12K-01 6 39824117 39824117 C A DAAM2 Missense_Mutation p.F13L 0.45 deleterious(0.04) benign(0.209) TCGA-C8-A12K-01 6 86197087 86197087 G A NT5E Silent p.R328R 0.30 TCGA-C8-A12K-01 7 12620847 12620847 G A SCIN Splice_Site p.X172_splice 0.27 TCGA-C8-A12K-01 7 131887475 131887475 G A PLXNA4 Missense_Mutation p.P839L 0.21 tolerated(0.2) benign(0.009) TCGA-C8-A12K-01 7 149557807 149557807 G C ZNF862 Missense_Mutation p.E520Q 0.33 tolerated(0.11) probably_damaging(0.92) TCGA-C8-A12K-01 7 38725521 38725521 G A FAM183B Nonsense_Mutation p.R29* 0.29 TCGA-C8-A12K-01 7 50450348 50450348 T A IKZF1 Missense_Mutation p.C178S 0.28 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 8 110308645 110308645 C A NUDCD1 Nonsense_Mutation p.E143* 0.17 TCGA-C8-A12K-01 8 133726409 133726409 T A TMEM71 Missense_Mutation p.T250S 0.04 deleterious(0.02) possibly_damaging(0.886) TCGA-C8-A12K-01 8 135669982 135669982 T C ZFAT Splice_Site p.X7_splice 0.12 TCGA-C8-A12K-01 8 139767455 139767455 T A COL22A1 Splice_Site p.X660_splice 0.22 TCGA-C8-A12K-01 8 142225925 142225925 C T SLC45A4 Missense_Mutation p.G574D 0.05 deleterious(0) probably_damaging(0.996) TCGA-C8-A12K-01 8 142487894 142487894 C G MROH5 3'UTR 0.16 TCGA-C8-A12K-01 8 145742047 145742047 T G RECQL4 Silent p.A152A 0.04 TCGA-C8-A12K-01 8 15508241 15508241 C G TUSC3 Missense_Mutation p.S115C 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A12K-01 8 26627933 26627933 G A ADRA1A Silent p.P378P 0.21 TCGA-C8-A12K-01 8 52336142 52336142 T G PXDNL Silent p.T596T 0.22 TCGA-C8-A12K-01 8 68087581 68087581 G C CSPP1 Missense_Mutation p.D1002H 0.14 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 8 68138335 68138335 C T ARFGEF1 Missense_Mutation p.A1334T 0.30 tolerated(0.25) benign(0.292) TCGA-C8-A12K-01 9 120476479 120476479 G A TLR4 Silent p.E691E 0.05 TCGA-C8-A12K-01 9 18906856 18906856 T - ADAMTSL1 Frame_Shift_Del p.W1710Gfs*31 0.34 TCGA-C8-A12K-01 9 21384882 21384882 G C IFNA2 Missense_Mutation p.I149M 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-C8-A12K-01 9 34834342 34834342 C T FAM205B RNA 0.14 TCGA-C8-A12K-01 9 77681703 77681703 C G NMRK1 Missense_Mutation p.D184H 0.05 deleterious(0.04) possibly_damaging(0.472) TCGA-C8-A12K-01 9 79324986 79324986 T A PRUNE2 Missense_Mutation p.E735V 0.21 deleterious(0) probably_damaging(0.921) TCGA-C8-A12K-01 9 94821572 94821572 A G SPTLC1 Silent p.F193F 0.56 TCGA-C8-A12K-01 X 101091722 101091722 A G NXF5 Intron 0.22 TCGA-C8-A12K-01 X 103268036 103268036 C T H2BFWT Missense_Mutation p.R66H 0.04 tolerated(0.08) benign(0.001) TCGA-C8-A12K-01 X 107979498 107979498 A T IRS4 Missense_Mutation p.L26Q 0.30 tolerated_low_confidence(0.07) benign(0.403) TCGA-C8-A12K-01 X 123775840 123775840 C G TENM1 Missense_Mutation p.E626D 0.05 tolerated(0.07) benign(0.326) TCGA-C8-A12K-01 X 125686220 125686220 G A DCAF12L1 Silent p.D124D 0.19 TCGA-C8-A12K-01 X 129148107 129148107 G A BCORL1 Silent p.P453P 0.17 TCGA-C8-A12K-01 X 13337695 13337695 C A ATXN3L Missense_Mutation p.W120L 0.33 deleterious(0) probably_damaging(0.994) TCGA-C8-A12K-01 X 134493837 134493837 G T ZNF449 Missense_Mutation p.D194Y 0.21 tolerated(0.65) possibly_damaging(0.556) TCGA-C8-A12K-01 X 141290621 141290621 C G MAGEC2 3'UTR 0.23 TCGA-C8-A12K-01 X 147014261 147014261 C G FMR1 Missense_Mutation p.Q287E 0.23 deleterious(0.03) benign(0.091) TCGA-C8-A12K-01 X 152827699 152827699 A T ATP2B3 Missense_Mutation p.Q1053L 0.27 tolerated(0.09) probably_damaging(0.955) TCGA-C8-A12K-01 X 24760174 24760174 C T POLA1 Missense_Mutation p.A795V 0.27 deleterious(0) probably_damaging(1) TCGA-C8-A12K-01 X 70316804 70316804 T A FOXO4 Silent p.G142G 0.27 TCGA-C8-A12K-01 X 70352290 70352290 C G MED12 Silent p.V1439V 0.17 TCGA-C8-A12L-01 10 105173788 105173788 C G PDCD11 Missense_Mutation p.H417Q 0.67 deleterious(0) possibly_damaging(0.878) TCGA-C8-A12L-01 10 47756067 47756067 C A ANXA8L2 Missense_Mutation p.P176Q 0.23 tolerated(0.4) benign(0.344) TCGA-C8-A12L-01 10 50916667 50916667 C T C10orf53 3'UTR 0.29 TCGA-C8-A12L-01 10 97779420 97779420 C T CC2D2B Intron 0.48 TCGA-C8-A12L-01 11 128391894 128391894 C A ETS1 Intron 0.44 TCGA-C8-A12L-01 11 57509076 57509076 C T C11orf31 Silent p.P3P 0.26 TCGA-C8-A12L-01 11 6007382 6007382 C T OR52L1 Missense_Mutation p.G260D 0.05 deleterious(0) probably_damaging(0.971) TCGA-C8-A12L-01 11 6790159 6790159 G A OR2AG2 Silent p.S10S 0.27 TCGA-C8-A12L-01 11 78369780 78369780 A G TENM4 Missense_Mutation p.S2545P 0.13 tolerated(0.33) benign(0.009) TCGA-C8-A12L-01 12 101504243 101504243 C G ANO4 Silent p.A702A 0.38 TCGA-C8-A12L-01 12 112884103 112884103 G A PTPN11 Missense_Mutation p.G13D 0.33 deleterious(0) probably_damaging(0.999) TCGA-C8-A12L-01 12 1755250 1755250 C G WNT5B Missense_Mutation p.C304W 0.48 deleterious(0) probably_damaging(0.999) TCGA-C8-A12L-01 12 53453704 53453704 C T TENC1 Missense_Mutation p.A770V 0.25 tolerated(0.55) benign(0.028) TCGA-C8-A12L-01 12 96388760 96388760 C T HAL Missense_Mutation p.D87N 0.10 tolerated_low_confidence(0.16) benign(0.017) TCGA-C8-A12L-01 13 49865956 49865956 C T CDADC1 3'UTR 0.37 TCGA-C8-A12L-01 14 24605501 24605501 C G PSME1 Silent p.A10A 0.29 TCGA-C8-A12L-01 14 93412701 93412701 G C ITPK1 Silent p.A292A 0.73 TCGA-C8-A12L-01 14 94524203 94524203 C G DDX24 Missense_Mutation p.D652H 0.69 deleterious(0) probably_damaging(1) TCGA-C8-A12L-01 16 28970093 28970093 C T NFATC2IP Missense_Mutation p.P301L 0.06 deleterious(0) probably_damaging(0.989) TCGA-C8-A12L-01 16 48265859 48265859 C T ABCC11 5'UTR 0.35 TCGA-C8-A12L-01 16 774397 774397 G C CCDC78 Missense_Mutation p.A293G 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-C8-A12L-01 17 2270688 2270688 A G SGSM2 Missense_Mutation p.N471S 0.43 tolerated(0.58) benign(0.003) TCGA-C8-A12L-01 17 26087755 26087755 G A NOS2 Silent p.H968H 0.31 TCGA-C8-A12L-01 17 36070537 36070554 TGTGGCCTGGGTCCAGGC - HNF1B In_Frame_Del p.S388_H393del 0.11 TCGA-C8-A12L-01 17 42330612 42330612 C T SLC4A1 Missense_Mutation p.V729M 0.52 deleterious(0) probably_damaging(0.999) TCGA-C8-A12L-01 17 48600415 48600415 G A MYCBPAP Missense_Mutation p.R501Q 0.25 deleterious(0) probably_damaging(1) TCGA-C8-A12L-01 17 67188786 67188786 C A ABCA10 Missense_Mutation p.V597L 0.26 deleterious(0.03) benign(0.067) TCGA-C8-A12L-01 17 73504315 73504324 CCATCAGCAT - CASKIN2 Frame_Shift_Del p.A47Sfs*16 0.11 TCGA-C8-A12L-01 17 73519402 73519402 T A TSEN54 Silent p.P433P 0.12 TCGA-C8-A12L-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.42 deleterious(0) probably_damaging(1) TCGA-C8-A12L-01 18 12825813 12825813 A C PTPN2 Missense_Mutation p.I164S 0.40 deleterious(0.03) benign(0.409) TCGA-C8-A12L-01 19 15586540 15586540 A - PGLYRP2 Frame_Shift_Del p.F314Sfs*13 0.52 TCGA-C8-A12L-01 19 16024565 16024576 GCTCCACCCGCA - CYP4F11 In_Frame_Del p.L514_E517del 0.25 TCGA-C8-A12L-01 19 36110636 36110636 C G HAUS5 Missense_Mutation p.T461R 0.28 tolerated(0.05) possibly_damaging(0.478) TCGA-C8-A12L-01 19 38960007 38960007 G A RYR1 Missense_Mutation p.V1207M 0.19 probably_damaging(0.994) TCGA-C8-A12L-01 19 46181247 46181247 G T GIPR Silent p.R336R 0.33 TCGA-C8-A12L-01 19 51452007 51452007 C A KLK5 Missense_Mutation p.Q205H 0.35 deleterious(0) probably_damaging(0.928) TCGA-C8-A12L-01 1 144930847 144930847 G C PDE4DIP Intron 0.15 TCGA-C8-A12L-01 1 150923915 150923915 C G SETDB1 Missense_Mutation p.S763C 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-C8-A12L-01 1 152285926 152285934 TCAGGCTGT - FLG In_Frame_Del p.E476_P478del 0.30 TCGA-C8-A12L-01 1 157771712 157771712 G T FCRL1 Missense_Mutation p.N293K 0.28 tolerated(0.05) benign(0.064) TCGA-C8-A12L-01 1 158582648 158582648 C T SPTA1 Missense_Mutation p.A2365T 0.25 tolerated(0.39) possibly_damaging(0.872) TCGA-C8-A12L-01 1 158943528 158943528 C A PYHIN1 Missense_Mutation p.S484Y 0.34 benign(0.002) TCGA-C8-A12L-01 1 160280016 160280016 T A COPA Missense_Mutation p.Y370F 0.23 tolerated(0.19) benign(0.072) TCGA-C8-A12L-01 1 160389022 160389022 C T VANGL2 Silent p.C141C 0.31 TCGA-C8-A12L-01 1 16351326 16351326 C T CLCNKA Missense_Mutation p.P100S 0.48 deleterious(0) probably_damaging(0.992) TCGA-C8-A12L-01 1 179322988 179322988 G T SOAT1 3'UTR 0.19 TCGA-C8-A12L-01 1 197396665 197396665 T A CRB1 Missense_Mutation p.I737N 0.74 deleterious(0.01) benign(0.17) TCGA-C8-A12L-01 1 20442903 20442903 C T PLA2G2D Missense_Mutation p.M36I 0.52 tolerated(0.2) benign(0) TCGA-C8-A12L-01 1 228402602 228402602 C G OBSCN Missense_Mutation p.T544S 0.16 benign(0.055) TCGA-C8-A12L-01 1 32688129 32688129 G A EIF3I Intron 0.49 TCGA-C8-A12L-01 1 4832546 4832546 C T AJAP1 Missense_Mutation p.S375L 0.47 tolerated(0.15) benign(0.198) TCGA-C8-A12L-01 1 94528272 94528272 C G ABCA4 Missense_Mutation p.D600H 0.65 deleterious(0) probably_damaging(0.992) TCGA-C8-A12L-01 1 94528779 94528779 C G ABCA4 Missense_Mutation p.G550A 0.61 tolerated(0.2) benign(0.152) TCGA-C8-A12L-01 1 94528840 94528840 C G ABCA4 Missense_Mutation p.D530H 0.60 deleterious(0.01) probably_damaging(0.983) TCGA-C8-A12L-01 1 94528861 94528861 C G ABCA4 Missense_Mutation p.D523H 0.60 deleterious(0) probably_damaging(0.983) TCGA-C8-A12L-01 20 30137882 30137882 G T HM13 Missense_Mutation p.V228L 0.24 deleterious(0) probably_damaging(0.955) TCGA-C8-A12L-01 21 43411588 43411588 G A ZBTB21 Nonsense_Mutation p.Q873* 0.57 TCGA-C8-A12L-01 22 31971290 31971291 - A SFI1 Frame_Shift_Ins p.R333Kfs*42 0.29 TCGA-C8-A12L-01 22 36696999 36696999 T G MYH9 Missense_Mutation p.E912D 0.36 probably_damaging(0.998) TCGA-C8-A12L-01 2 27439748 27439765 GGAGCCACCACTCTATCC - ATRAID In_Frame_Del p.G263_S268del 0.51 TCGA-C8-A12L-01 2 27800838 27800838 C T C2orf16 Missense_Mutation p.P467S 0.56 tolerated(0.45) benign(0.239) TCGA-C8-A12L-01 2 61720102 61720102 G T XPO1 Missense_Mutation p.F444L 0.20 tolerated(0.06) benign(0.015) TCGA-C8-A12L-01 3 101578232 101578265 CCTGGCTAGCAACACTCACTGTCAGTTAGGCAGT - NFKBIZ 3'UTR 0.29 TCGA-C8-A12L-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.80 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A12L-01 3 180366114 180366114 C T CCDC39 Missense_Mutation p.V401M 0.11 tolerated(0.09) benign(0.189) TCGA-C8-A12L-01 3 25622057 25622057 A T RARB Silent p.R210R 0.28 TCGA-C8-A12L-01 3 53899288 53899288 G A IL17RB Missense_Mutation p.A488T 0.52 tolerated(0.6) benign(0.003) TCGA-C8-A12L-01 3 58156382 58156382 C - FLNB Frame_Shift_Del p.Q2599Nfs*18 0.43 TCGA-C8-A12L-01 3 58196679 58196679 C T DNASE1L3 Intron 0.60 TCGA-C8-A12L-01 3 71027004 71027004 G C FOXP1 Missense_Mutation p.D443E 0.06 tolerated(0.28) benign(0.014) TCGA-C8-A12L-01 4 96762083 96762083 G A PDHA2 Missense_Mutation p.R261H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A12L-01 5 107559823 107559823 T A FBXL17 Missense_Mutation p.K538M 0.54 deleterious(0.01) probably_damaging(0.921) TCGA-C8-A12L-01 5 35871268 35871268 A G IL7R Missense_Mutation p.M164V 0.49 tolerated(0.29) benign(0.001) TCGA-C8-A12L-01 5 78351620 78351660 TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA - DMGDH Splice_Site p.X116_splice 0.35 TCGA-C8-A12L-01 6 26197245 26197245 G T HIST1H3D Missense_Mutation p.D78E 0.60 tolerated_low_confidence(0.08) benign(0.006) TCGA-C8-A12L-01 6 31965519 31965519 G T C4A Missense_Mutation p.G1372V 0.17 deleterious(0) probably_damaging(0.999) TCGA-C8-A12L-01 6 31998256 31998256 G T C4B Missense_Mutation p.G1372V 0.16 deleterious(0) probably_damaging(1) TCGA-C8-A12L-01 6 42236918 42236918 G A TRERF1 Silent p.S137S 0.49 TCGA-C8-A12L-01 6 64498094 64498094 C A EYS Missense_Mutation p.G2543C 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A12L-01 7 120496813 120496813 G A TSPAN12 Missense_Mutation p.A2V 0.49 tolerated(0.15) benign(0.14) TCGA-C8-A12L-01 7 37780680 37780680 T - GPR141 Frame_Shift_Del p.F230Lfs*2 0.30 TCGA-C8-A12L-01 7 44192974 44192974 A T GCK Missense_Mutation p.L46Q 0.31 deleterious(0) probably_damaging(1) TCGA-C8-A12L-01 7 64467092 64467092 T G ERV3-1 5'Flank 0.23 TCGA-C8-A12L-01 7 74114545 74114545 A C GTF2I Intron 0.16 TCGA-C8-A12L-01 8 27321462 27321462 G A CHRNA2 Silent p.F166F 0.06 TCGA-C8-A12L-01 8 61741278 61741278 C T CHD7 Silent p.F1145F 0.11 TCGA-C8-A12L-01 8 67592086 67592086 C T C8orf44 Missense_Mutation p.P126L 0.45 tolerated_low_confidence(1) benign(0) TCGA-C8-A12L-01 8 95182679 95182679 G T CDH17 Missense_Mutation p.P338T 0.20 deleterious(0) probably_damaging(0.931) TCGA-C8-A12L-01 8 95658491 95658491 C T ESRP1 Silent p.D157D 0.17 TCGA-C8-A12L-01 8 98041636 98041636 C T CPQ Missense_Mutation p.R323C 0.39 deleterious(0) probably_damaging(0.967) TCGA-C8-A12L-01 9 124962231 124962231 G A MORN5 3'UTR 0.32 TCGA-C8-A12L-01 9 32634816 32634817 - A TAF1L Frame_Shift_Ins p.P255Tfs*33 0.35 TCGA-C8-A12L-01 X 100667034 100667034 T A HNRNPH2 Missense_Mutation p.W20R 0.25 deleterious(0.01) benign(0.192) TCGA-C8-A12L-01 X 107316029 107316029 G A VSIG1 Missense_Mutation p.G215R 0.34 tolerated(0.06) benign(0.445) TCGA-C8-A12L-01 X 134706902 134706902 C G DDX26B Missense_Mutation p.L484V 0.20 tolerated(0.4) probably_damaging(0.931) TCGA-C8-A12L-01 X 13645206 13645206 T A EGFL6 Silent p.P455P 0.38 TCGA-C8-A12L-01 X 144905067 144905067 C A SLITRK2 Missense_Mutation p.T375N 0.17 tolerated(0.05) benign(0.147) TCGA-C8-A12L-01 X 34148875 34148875 C A FAM47A Missense_Mutation p.E507D 0.27 tolerated(0.1) benign(0.004) TCGA-C8-A12L-01 X 48564954 48564954 C T SUV39H1 Silent p.I347I 0.28 TCGA-C8-A12L-01 X 53106659 53106659 C A GPR173 Missense_Mutation p.R286S 0.12 deleterious(0) possibly_damaging(0.863) TCGA-C8-A12M-01 10 124742808 124742809 CT - PSTK Frame_Shift_Del p.L179Rfs*5 0.15 TCGA-C8-A12M-01 10 61819641 61819641 G C ANK3 Intron 0.16 TCGA-C8-A12M-01 10 8115873 8115874 - C GATA3 Frame_Shift_Ins p.P409Afs*99 0.32 TCGA-C8-A12M-01 11 111156467 111156467 G A C11orf53 Silent p.T133T 0.42 TCGA-C8-A12M-01 11 123777212 123777212 T G OR8D4 Missense_Mutation p.L25R 0.60 deleterious(0) possibly_damaging(0.703) TCGA-C8-A12M-01 11 126134994 126134994 A G SRPR Missense_Mutation p.V462A 0.24 deleterious(0) probably_damaging(0.955) TCGA-C8-A12M-01 11 17531314 17531314 G A USH1C Silent p.G534G 0.43 TCGA-C8-A12M-01 11 20389050 20389050 G C HTATIP2 Intron 0.19 TCGA-C8-A12M-01 11 47594816 47594816 T C KBTBD4 Missense_Mutation p.D424G 0.22 tolerated(0.05) benign(0.102) TCGA-C8-A12M-01 11 48164480 48164480 C G PTPRJ Missense_Mutation p.P818R 0.25 tolerated(0.08) benign(0.052) TCGA-C8-A12M-01 11 6561187 6561187 C T DNHD1 Missense_Mutation p.R1168C 0.27 probably_damaging(1) TCGA-C8-A12M-01 12 12312080 12312080 C T LRP6 Missense_Mutation p.R825H 0.09 deleterious(0.02) benign(0.262) TCGA-C8-A12M-01 12 123498580 123498580 G A PITPNM2 Missense_Mutation p.R30C 0.24 deleterious(0) probably_damaging(0.956) TCGA-C8-A12M-01 12 12397348 12397348 C T LRP6 Silent p.G99G 0.14 TCGA-C8-A12M-01 12 52159467 52159467 A C SCN8A Missense_Mutation p.K853Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-C8-A12M-01 12 54757355 54757355 C A GPR84 Missense_Mutation p.R94M 0.17 deleterious(0) probably_damaging(0.918) TCGA-C8-A12M-01 12 55863307 55863307 T C OR6C70 Missense_Mutation p.I206V 0.18 tolerated_low_confidence(0.54) benign(0.006) TCGA-C8-A12M-01 12 65857045 65857045 C T MSRB3 Silent p.T174T 0.07 TCGA-C8-A12M-01 12 69666823 69666823 G A CPSF6 3'UTR 0.11 TCGA-C8-A12M-01 12 70087660 70087660 C T BEST3 Missense_Mutation p.R92Q 0.05 deleterious(0) probably_damaging(1) TCGA-C8-A12M-01 12 70933795 70933795 G A PTPRB Nonsense_Mutation p.R1868* 0.14 TCGA-C8-A12M-01 12 80935456 80935456 C T PTPRQ Nonsense_Mutation p.Q1089* 0.26 TCGA-C8-A12M-01 13 101278370 101278370 T G TMTC4 Missense_Mutation p.K514T 0.49 tolerated(0.38) benign(0.009) TCGA-C8-A12M-01 13 41639395 41639395 G T WBP4 Missense_Mutation p.E78D 0.32 deleterious(0) probably_damaging(0.965) TCGA-C8-A12M-01 13 46629931 46629931 G T CPB2 Silent p.T351T 0.65 TCGA-C8-A12M-01 15 45444508 45444508 C T DUOX1 Missense_Mutation p.T1073M 0.16 tolerated(0.1) benign(0.017) TCGA-C8-A12M-01 15 63618401 63618401 G A CA12 3'UTR 0.59 TCGA-C8-A12M-01 15 75647144 75647144 C T NEIL1 Nonsense_Mutation p.R363* 0.17 TCGA-C8-A12M-01 16 78466448 78466448 C T WWOX Silent p.N285N 0.17 TCGA-C8-A12M-01 17 17163709 17163709 T C COPS3 Missense_Mutation p.K281R 0.18 deleterious(0.03) benign(0.211) TCGA-C8-A12M-01 17 36865482 36865482 C T MLLT6 Silent p.C137C 0.15 TCGA-C8-A12M-01 17 41166349 41166349 G A IFI35 3'UTR 0.73 TCGA-C8-A12M-01 17 43906585 43906585 A C CRHR1 Missense_Mutation p.K111T 0.44 tolerated(0.08) benign(0.084) TCGA-C8-A12M-01 17 4576281 4576281 C A PELP1 Missense_Mutation p.G669C 0.60 probably_damaging(0.965) TCGA-C8-A12M-01 17 49043508 49043508 G A SPAG9 3'UTR 0.24 TCGA-C8-A12M-01 17 54978817 54978817 C G TRIM25 Missense_Mutation p.Q350H 0.20 tolerated(0.22) benign(0.002) TCGA-C8-A12M-01 17 61897110 61897110 C T FTSJ3 3'UTR 0.49 TCGA-C8-A12M-01 17 62500135 62500135 C T DDX5 Missense_Mutation p.G136E 0.47 deleterious(0) probably_damaging(1) TCGA-C8-A12M-01 17 62500136 62500136 C T DDX5 Missense_Mutation p.G136R 0.47 deleterious(0) probably_damaging(1) TCGA-C8-A12M-01 17 62500178 62500178 C T DDX5 Missense_Mutation p.A122T 0.47 deleterious(0.01) benign(0.289) TCGA-C8-A12M-01 17 62553744 62553745 AG - SMURF2 Frame_Shift_Del p.P471Rfs*5 0.14 TCGA-C8-A12M-01 17 62758551 62758551 G C hsa-mir-6080 RNA 0.21 TCGA-C8-A12M-01 17 62758648 62758648 C G hsa-mir-6080 RNA 0.20 TCGA-C8-A12M-01 17 67282161 67282161 T C ABCA5 Missense_Mutation p.Y717C 0.21 tolerated(0.18) benign(0.003) TCGA-C8-A12M-01 17 76116925 76116925 G A TMC6 Intron 0.11 TCGA-C8-A12M-01 17 76968195 76968195 C T LGALS3BP Silent p.R407R 0.21 TCGA-C8-A12M-01 17 77768449 77768449 A T CBX8 Missense_Mutation p.F385L 0.06 deleterious(0) benign(0.153) TCGA-C8-A12M-01 19 50881600 50881600 C T NR1H2 Missense_Mutation p.R126W 0.41 deleterious(0) probably_damaging(0.97) TCGA-C8-A12M-01 1 120854618 120854618 T A FAM72B 3'UTR 0.12 TCGA-C8-A12M-01 1 145663328 145663328 G A RNF115 Missense_Mutation p.R130Q 0.15 tolerated(0.05) benign(0.007) TCGA-C8-A12M-01 1 151288112 151288112 G A PI4KB Silent p.S294S 0.08 TCGA-C8-A12M-01 1 155584672 155584672 A T MSTO1 3'UTR 0.13 TCGA-C8-A12M-01 1 155701787 155701787 C A DAP3 Missense_Mutation p.P319H 0.11 deleterious(0.01) probably_damaging(0.93) TCGA-C8-A12M-01 1 158913619 158913619 G T PYHIN1 Missense_Mutation p.D348Y 0.57 deleterious(0) probably_damaging(1) TCGA-C8-A12M-01 1 183914792 183914792 C T COLGALT2 Intron 0.31 TCGA-C8-A12M-01 1 190068114 190068114 G A BRINP3 Silent p.D445D 0.06 TCGA-C8-A12M-01 1 245766076 245766076 C T KIF26B Silent p.D516D 0.37 TCGA-C8-A12M-01 2 240984860 240984860 T C OR6B3 Silent p.P210P 0.39 TCGA-C8-A12M-01 2 38795342 38795342 C G HNRNPLL Silent p.P519P 0.60 TCGA-C8-A12M-01 3 113721362 113721362 G A KIAA1407 Nonsense_Mutation p.R668* 0.17 TCGA-C8-A12M-01 3 44700797 44700797 C T ZNF35 Silent p.A314A 0.11 TCGA-C8-A12M-01 3 54786629 54786629 C T CACNA2D3 Missense_Mutation p.R391C 0.20 deleterious(0) probably_damaging(0.998) TCGA-C8-A12M-01 4 104059573 104059573 T C CENPE Missense_Mutation p.R2080G 0.18 benign(0.001) TCGA-C8-A12M-01 4 107845202 107845202 C T DKK2 Missense_Mutation p.R230H 0.44 deleterious(0) probably_damaging(0.987) TCGA-C8-A12M-01 4 44682858 44682858 C G GUF1 Missense_Mutation p.P142R 0.40 deleterious(0) probably_damaging(1) TCGA-C8-A12M-01 4 57272683 57272683 T C PPAT Missense_Mutation p.N127S 0.14 deleterious(0.03) probably_damaging(0.948) TCGA-C8-A12M-01 5 154181757 154181757 A T LARP1 Missense_Mutation p.D559V 0.31 deleterious(0) probably_damaging(0.999) TCGA-C8-A12M-01 6 26093039 26093039 C G HFE Missense_Mutation p.A248G 0.18 tolerated(0.08) benign(0.007) TCGA-C8-A12M-01 6 76554660 76554663 ACAA - MYO6 Frame_Shift_Del p.K289Rfs*17 0.38 TCGA-C8-A12M-01 7 150920859 150920859 C T ABCF2 Silent p.S209S 0.09 TCGA-C8-A12M-01 7 98528431 98528431 T A TRRAP Missense_Mutation p.V1190D 0.38 probably_damaging(0.993) TCGA-C8-A12M-01 8 113650979 113650979 G A CSMD3 Missense_Mutation p.R1158C 0.08 deleterious(0) probably_damaging(0.988) TCGA-C8-A12M-01 8 133899569 133899569 T G TG Missense_Mutation p.V651G 0.07 deleterious(0.01) probably_damaging(0.927) TCGA-C8-A12M-01 8 145640273 145640273 A T SLC39A4 Missense_Mutation p.L271Q 0.09 deleterious(0) probably_damaging(0.991) TCGA-C8-A12M-01 8 3057330 3057330 C T CSMD1 Silent p.G1700G 0.41 TCGA-C8-A12M-01 8 61761708 61761708 A C CHD7 Missense_Mutation p.K1800T 0.06 probably_damaging(0.994) TCGA-C8-A12M-01 8 97156721 97156721 G A GDF6 3'UTR 0.88 TCGA-C8-A12M-01 9 104356697 104356697 G A PPP3R2 Silent p.I172I 0.16 TCGA-C8-A12M-01 9 127683437 127683437 T C GOLGA1 Missense_Mutation p.I272V 0.28 tolerated(0.08) benign(0.021) TCGA-C8-A12M-01 9 130605471 130605471 C T ENG Missense_Mutation p.E41K 0.21 tolerated(0.73) benign(0.004) TCGA-C8-A12M-01 9 135273709 135273709 G A TTF1 Silent p.V532V 0.18 TCGA-C8-A12M-01 9 139910488 139910488 C T ABCA2 Silent p.T1081T 0.06 TCGA-C8-A12M-01 9 34520902 34520902 C T DNAI1 3'UTR 0.15 TCGA-C8-A12M-01 9 79320728 79320728 G A PRUNE2 Silent p.V2154V 0.15 TCGA-C8-A12M-01 X 107814670 107814670 G T COL4A5 Missense_Mutation p.G138C 0.17 unknown(0) TCGA-C8-A12M-01 X 99663201 99663201 G T PCDH19 Missense_Mutation p.A132E 0.22 tolerated(0.43) benign(0.002) TCGA-C8-A12N-01 10 105811267 105811267 G A COL17A1 Silent p.S670S 0.37 TCGA-C8-A12N-01 10 15726025 15726025 G A ITGA8 Silent p.A182A 0.09 TCGA-C8-A12N-01 11 113614667 113614667 G A ZW10 Silent p.H456H 0.08 TCGA-C8-A12N-01 11 12399200 12399200 C T PARVA Silent p.A42A 0.37 TCGA-C8-A12N-01 12 11183409 11183409 C G TAS2R31 Missense_Mutation p.D176H 0.32 tolerated(0.12) benign(0.014) TCGA-C8-A12N-01 12 123794131 123794131 C A SBNO1 Splice_Site p.X1148_splice 0.11 TCGA-C8-A12N-01 12 130907060 130907060 C T RIMBP2 Missense_Mutation p.R803Q 0.38 tolerated(0.07) benign(0.135) TCGA-C8-A12N-01 12 2775903 2775903 G A CACNA1C Silent p.P1574P 0.43 TCGA-C8-A12N-01 12 49445909 49445909 G - KMT2D Frame_Shift_Del p.L520Cfs*410 0.26 TCGA-C8-A12N-01 12 57872994 57872994 G A ARHGAP9 Missense_Mutation p.R66C 0.36 deleterious(0.01) benign(0.024) TCGA-C8-A12N-01 16 15831386 15831386 G T MYH11 Silent p.I1078I 0.37 TCGA-C8-A12N-01 17 38933368 38933368 G T KRT27 Silent p.V421V 0.41 TCGA-C8-A12N-01 17 41931261 41931261 T C CD300LG Missense_Mutation p.Y190H 0.45 tolerated(0.47) benign(0.001) TCGA-C8-A12N-01 17 9862645 9862645 C A GAS7 Intron 0.42 TCGA-C8-A12N-01 19 15276820 15276820 G A NOTCH3 Silent p.D1815D 0.25 TCGA-C8-A12N-01 19 307133 307133 C T MIER2 Silent p.S534S 0.33 TCGA-C8-A12N-01 1 112002198 112002198 A G ATP5F1 Silent p.E211E 0.18 TCGA-C8-A12N-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.61 deleterious(0.02) probably_damaging(0.959) TCGA-C8-A12N-01 5 167943847 167943847 C T RARS Missense_Mutation p.A506V 0.32 deleterious(0) probably_damaging(0.952) TCGA-C8-A12N-01 5 457049 457049 C G EXOC3 Silent p.V364V 0.30 TCGA-C8-A12N-01 5 56167804 56167805 AC - MAP3K1 Frame_Shift_Del p.T457Sfs*3 0.29 TCGA-C8-A12N-01 5 56189423 56189440 TCTTCGTTGTTTAGAACT AACA MAP3K1 Frame_Shift_Del p.L1486Tfs*32 0.23 TCGA-C8-A12N-01 5 56189440 56189440 T A MAP3K1 Missense_Mutation p.L1491H 0.25 tolerated(0.13) probably_damaging(0.989) TCGA-C8-A12N-01 6 126243897 126243897 G C NCOA7 Missense_Mutation p.G814R 0.38 deleterious(0) probably_damaging(0.999) TCGA-C8-A12N-01 6 145095443 145095443 C T UTRN Missense_Mutation p.R2859C 0.03 deleterious(0) probably_damaging(0.999) TCGA-C8-A12N-01 7 143095047 143095047 G C EPHA1 Missense_Mutation p.F527L 0.25 tolerated(0.08) possibly_damaging(0.575) TCGA-C8-A12N-01 7 151856014 151856014 C - KMT2C Frame_Shift_Del p.K3870Rfs*19 0.27 TCGA-C8-A12N-01 7 41729851 41729851 G A INHBA Silent p.S226S 0.28 TCGA-C8-A12N-01 9 74970815 74970815 T C ZFAND5 3'UTR 0.34 TCGA-C8-A12N-01 X 64721753 64721753 T C ZC3H12B Missense_Mutation p.L392P 0.35 deleterious(0) probably_damaging(0.999) TCGA-C8-A12N-01 X 99605659 99605659 G C PCDH19 Missense_Mutation p.A887G 0.29 tolerated(0.39) possibly_damaging(0.827) TCGA-C8-A12O-01 10 27459378 27459378 A G MASTL Missense_Mutation p.K497R 0.36 tolerated(0.91) benign(0.001) TCGA-C8-A12O-01 10 49791161 49791161 C T ARHGAP22 Missense_Mutation p.R24Q 0.05 tolerated(0.09) benign(0.203) TCGA-C8-A12O-01 11 1272862 1272862 G A MUC5B Missense_Mutation p.V4918M 0.08 unknown(0) TCGA-C8-A12O-01 11 610989 610991 GGA - PHRF1 In_Frame_Del p.E1572del 0.36 TCGA-C8-A12O-01 11 67254510 67254510 G A AIP Missense_Mutation p.D45N 0.10 tolerated(0.47) benign(0) TCGA-C8-A12O-01 11 73680349 73680349 C G DNAJB13 Missense_Mutation p.P260R 0.17 deleterious(0.04) probably_damaging(0.971) TCGA-C8-A12O-01 11 8123189 8123189 G T TUB 3'UTR 0.18 TCGA-C8-A12O-01 11 8660279 8660279 C T TRIM66 Silent p.A597A 0.04 TCGA-C8-A12O-01 12 46318583 46318583 T G SCAF11 Silent p.P1278P 0.07 TCGA-C8-A12O-01 12 88910120 88910120 G A KITLG Missense_Mutation p.P171S 0.16 deleterious(0.01) probably_damaging(1) TCGA-C8-A12O-01 12 89998003 89998003 A G ATP2B1 Missense_Mutation p.F855L 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-C8-A12O-01 13 77644827 77644827 A G MYCBP2 Missense_Mutation p.L3910P 0.49 probably_damaging(0.993) TCGA-C8-A12O-01 14 81609772 81609772 C A TSHR Missense_Mutation p.A457D 0.31 deleterious(0) probably_damaging(1) TCGA-C8-A12O-01 15 82336479 82336479 G A MEX3B Silent p.N244N 0.17 TCGA-C8-A12O-01 15 84651390 84651390 G A ADAMTSL3 Missense_Mutation p.A1004T 0.07 tolerated(0.25) benign(0.139) TCGA-C8-A12O-01 16 30364546 30364546 C A CD2BP2 Missense_Mutation p.G291W 0.10 deleterious(0.02) possibly_damaging(0.7) TCGA-C8-A12O-01 16 72032228 72032228 G A PKD1L3 RNA 0.28 TCGA-C8-A12O-01 16 81174924 81174924 T G PKD1L2 5'Flank 0.36 TCGA-C8-A12O-01 16 89245960 89245960 G A CDH15 Missense_Mutation p.R60H 0.37 deleterious(0.04) benign(0.029) TCGA-C8-A12O-01 17 10303960 10303960 G T MYH8 Missense_Mutation p.S1161Y 0.23 deleterious(0.01) probably_damaging(0.918) TCGA-C8-A12O-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.27 tolerated(0.13) possibly_damaging(0.631) TCGA-C8-A12O-01 17 76487632 76487632 G A DNAH17 Nonsense_Mutation p.R2174* 0.29 TCGA-C8-A12O-01 19 11132428 11132428 G A SMARCA4 Missense_Mutation p.E882K 0.13 possibly_damaging(0.692) TCGA-C8-A12O-01 19 54403682 54403682 G A PRKCG Silent p.A461A 0.28 TCGA-C8-A12O-01 19 58384420 58384420 A G ZNF814 Missense_Mutation p.S780P 0.28 deleterious(0.01) probably_damaging(0.955) TCGA-C8-A12O-01 1 118640322 118640322 G A SPAG17 Missense_Mutation p.P328S 0.15 deleterious(0) probably_damaging(0.999) TCGA-C8-A12O-01 1 155531968 155531968 C T ASH1L 5'UTR 0.56 TCGA-C8-A12O-01 1 213037133 213037133 C T FLVCR1 Missense_Mutation p.L269F 0.13 tolerated(0.08) benign(0.035) TCGA-C8-A12O-01 1 228596209 228596209 C T TRIM17 Missense_Mutation p.R376Q 0.22 deleterious(0.03) possibly_damaging(0.448) TCGA-C8-A12O-01 1 27429181 27429181 G A SLC9A1 Silent p.H543H 0.19 TCGA-C8-A12O-01 1 85403443 85403443 C T MCOLN2 Missense_Mutation p.D444N 0.35 tolerated(0.4) benign(0.013) TCGA-C8-A12O-01 20 30816166 30816166 T A POFUT1 Missense_Mutation p.S215T 0.21 tolerated(0.08) possibly_damaging(0.491) TCGA-C8-A12O-01 20 31996281 31996281 C - SNTA1 3'UTR 0.20 TCGA-C8-A12O-01 20 36874487 36874487 C T KIAA1755 Silent p.A15A 0.25 TCGA-C8-A12O-01 20 57009722 57009723 TA - VAPB Frame_Shift_Del p.M93Vfs*5 0.10 TCGA-C8-A12O-01 20 60419757 60419757 C T CDH4 Missense_Mutation p.R204W 0.35 tolerated(0.12) probably_damaging(0.948) TCGA-C8-A12O-01 21 36252860 36252860 C G RUNX1 Missense_Mutation p.G168R 0.36 deleterious(0) probably_damaging(1) TCGA-C8-A12O-01 22 36537431 36537431 C T APOL3 Silent p.A342A 0.16 TCGA-C8-A12O-01 2 11772121 11772121 C T GREB1 Silent p.D1566D 0.15 TCGA-C8-A12O-01 2 178081262 178081262 T C HNRNPA3 Silent p.N195N 0.14 TCGA-C8-A12O-01 2 198353857 198353857 C A HSPD1 Missense_Mutation p.G362C 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-C8-A12O-01 2 228194484 228194484 A T MFF Missense_Mutation p.D8V 0.16 deleterious_low_confidence(0.03) benign(0.075) TCGA-C8-A12O-01 2 44445621 44445621 G A PPM1B Missense_Mutation p.R360H 0.03 tolerated(0.05) benign(0.384) TCGA-C8-A12O-01 4 143114276 143114276 C T INPP4B Missense_Mutation p.R382Q 0.13 tolerated(0.17) benign(0.022) TCGA-C8-A12O-01 5 115140913 115140913 T A CDO1 3'UTR 0.21 TCGA-C8-A12O-01 5 37158402 37158402 T A C5orf42 Missense_Mutation p.Y2579F 0.24 tolerated(0.27) benign(0.023) TCGA-C8-A12O-01 5 37169279 37169279 G A C5orf42 Missense_Mutation p.H2283Y 0.28 deleterious(0.05) possibly_damaging(0.854) TCGA-C8-A12O-01 7 143085937 143085937 C T ZYX Silent p.H464H 0.19 TCGA-C8-A12O-01 8 144940561 144940561 C T EPPK1 Silent p.V2287V 0.13 TCGA-C8-A12O-01 9 124528882 124528882 C T DAB2IP Missense_Mutation p.R496C 0.12 deleterious(0) probably_damaging(1) TCGA-C8-A12O-01 X 119677628 119677628 C T CUL4B Missense_Mutation p.E422K 0.02 tolerated(0.2) benign(0.017) TCGA-C8-A12O-01 X 49236865 49236865 G C GAGE2B Missense_Mutation p.R12T 0.15 possibly_damaging(0.519) TCGA-C8-A12P-01 10 7621758 7621758 G A ITIH5 Missense_Mutation p.R460C 0.11 deleterious(0) benign(0.202) TCGA-C8-A12P-01 11 112832377 112832377 G A NCAM1 Missense_Mutation p.G74R 0.10 deleterious(0.03) benign(0.013) TCGA-C8-A12P-01 11 117301526 117301526 G A DSCAML1 Silent p.I1926I 0.03 TCGA-C8-A12P-01 11 32955856 32955856 C G QSER1 Missense_Mutation p.H889D 0.20 tolerated(0.06) benign(0.08) TCGA-C8-A12P-01 11 46889599 46889599 T C LRP4 Missense_Mutation p.N1673S 0.22 tolerated(0.29) benign(0.001) TCGA-C8-A12P-01 11 50003262 50003262 G A OR4C12 Missense_Mutation p.S259L 0.14 deleterious_low_confidence(0) benign(0.165) TCGA-C8-A12P-01 11 57156722 57156722 C T PRG2 Missense_Mutation p.E43K 0.28 tolerated(0.09) benign(0.197) TCGA-C8-A12P-01 11 58126186 58126186 G A OR5B17 Silent p.D119D 0.26 TCGA-C8-A12P-01 11 58892505 58892506 GA - FAM111B Frame_Shift_Del p.E313Dfs*22 0.11 TCGA-C8-A12P-01 11 72540466 72540466 C G ATG16L2 3'UTR 0.30 TCGA-C8-A12P-01 11 83984277 83984277 G A DLG2 Intron 0.17 TCGA-C8-A12P-01 12 100551373 100551373 C G AC010203.1 5'Flank 0.10 TCGA-C8-A12P-01 12 100660851 100660851 C T DEPDC4 Missense_Mutation p.V2M 0.26 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-C8-A12P-01 12 11138561 11138561 C T TAS2R50 Silent p.%3D 0.14 TCGA-C8-A12P-01 12 112645729 112645729 C G HECTD4 Missense_Mutation p.E2548Q 0.19 probably_damaging(0.998) TCGA-C8-A12P-01 12 25148864 25148864 G A C12orf77 Missense_Mutation p.S95F 0.21 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-C8-A12P-01 12 43837630 43837630 A G ADAMTS20 Missense_Mutation p.Y752H 0.09 tolerated(1) benign(0.001) TCGA-C8-A12P-01 12 50571543 50571543 C A LIMA1 Silent p.L529L 0.17 TCGA-C8-A12P-01 12 56221462 56221462 C T DNAJC14 Silent p.L327L 0.18 TCGA-C8-A12P-01 12 56997477 56997477 T C BAZ2A Missense_Mutation p.T1018A 0.09 tolerated(0.66) benign(0.009) TCGA-C8-A12P-01 12 56997486 56997486 T C BAZ2A Splice_Site p.X1015_splice 0.10 TCGA-C8-A12P-01 12 57532316 57532316 G A LRP1 Missense_Mutation p.D48N 0.19 probably_damaging(0.996) TCGA-C8-A12P-01 12 57843849 57843849 G A INHBC 3'UTR 0.14 TCGA-C8-A12P-01 12 6933082 6933082 G A GPR162 Silent p.A6A 0.33 TCGA-C8-A12P-01 12 9317892 9317892 C G PZP Missense_Mutation p.C777S 0.14 deleterious(0) probably_damaging(0.991) TCGA-C8-A12P-01 13 113851339 113851339 G A PCID2 Missense_Mutation p.S140L 0.22 tolerated(0.44) benign(0.002) TCGA-C8-A12P-01 14 21360155 21360155 C T RNASE3 Missense_Mutation p.R104W 0.24 deleterious(0.01) possibly_damaging(0.802) TCGA-C8-A12P-01 14 33293371 33293371 C G AKAP6 Missense_Mutation p.H2118D 0.18 deleterious(0) probably_damaging(0.996) TCGA-C8-A12P-01 14 51448553 51448553 C G TRIM9 Silent p.R624R 0.20 TCGA-C8-A12P-01 14 53211599 53211599 G A STYX Missense_Mutation p.M29I 0.19 tolerated(0.16) benign(0.047) TCGA-C8-A12P-01 14 64600841 64600841 C T SYNE2 Missense_Mutation p.L4857F 0.16 probably_damaging(0.999) TCGA-C8-A12P-01 14 93723687 93723687 T G BTBD7 Missense_Mutation p.S488R 0.14 deleterious(0) probably_damaging(1) TCGA-C8-A12P-01 14 94526604 94526604 G C DDX24 Missense_Mutation p.Q585E 0.14 deleterious(0) possibly_damaging(0.84) TCGA-C8-A12P-01 15 32936016 32936016 G A SCG5 Missense_Mutation p.E75K 0.15 tolerated(0.11) possibly_damaging(0.622) TCGA-C8-A12P-01 15 44066875 44066875 C T ELL3 Missense_Mutation p.D248N 0.19 tolerated(0.16) benign(0.094) TCGA-C8-A12P-01 15 72637916 72637916 G C HEXA Intron 0.07 TCGA-C8-A12P-01 15 81271807 81271807 C G MESDC2 Missense_Mutation p.G153A 0.23 deleterious(0.05) benign(0.143) TCGA-C8-A12P-01 16 23722313 23722313 G C ERN2 Silent p.L88L 0.16 TCGA-C8-A12P-01 16 70497598 70497598 A C FUK Missense_Mutation p.K52T 0.17 tolerated(0.67) benign(0) TCGA-C8-A12P-01 16 815560 815560 C T MSLN Silent p.D246D 0.14 TCGA-C8-A12P-01 17 1201717 1201717 C A TUSC5 3'UTR 0.23 TCGA-C8-A12P-01 17 42275456 42275466 GACGGCGCTCT - ATXN7L3 5'Flank 0.18 TCGA-C8-A12P-01 17 47218633 47218633 G C B4GALNT2 Missense_Mutation p.K73N 0.26 tolerated(0.08) possibly_damaging(0.788) TCGA-C8-A12P-01 17 56621622 56621622 G A C17orf47 5'UTR 0.05 TCGA-C8-A12P-01 17 62007733 62007733 G A CD79B Missense_Mutation p.S45L 0.03 deleterious(0.03) possibly_damaging(0.677) TCGA-C8-A12P-01 17 62855692 62855692 C T LRRC37A3 Silent p.L1524L 0.06 TCGA-C8-A12P-01 17 64492335 64492335 C T PRKCA Silent p.V74V 0.04 TCGA-C8-A12P-01 17 66267076 66267076 C T SLC16A6 Missense_Mutation p.E409K 0.03 deleterious(0.02) possibly_damaging(0.507) TCGA-C8-A12P-01 17 74084623 74084623 C G EXOC7 Missense_Mutation p.K458N 0.26 deleterious(0.01) probably_damaging(0.955) TCGA-C8-A12P-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.35 deleterious(0) probably_damaging(1) TCGA-C8-A12P-01 17 8020169 8020169 C T ALOXE3 Missense_Mutation p.D225N 0.24 tolerated(0.37) benign(0.076) TCGA-C8-A12P-01 18 14843061 14843061 C G ANKRD30B Silent p.G930G 0.14 TCGA-C8-A12P-01 18 47500851 47500851 C A MYO5B Silent p.V397V 0.09 TCGA-C8-A12P-01 19 12491255 12491255 C G CTD-3105H18.14 3'UTR 0.15 TCGA-C8-A12P-01 19 14748956 14748956 G A EMR3 Missense_Mutation p.S482F 0.12 deleterious(0) probably_damaging(1) TCGA-C8-A12P-01 19 16652708 16652717 ACTTGTAGTA - CHERP Frame_Shift_Del p.Y55Afs*74 0.16 TCGA-C8-A12P-01 19 19756232 19756232 C G ATP13A1 Nonstop_Mutation p.*1205Sext*43 0.24 TCGA-C8-A12P-01 19 21720614 21720614 C T ZNF429 Missense_Mutation p.H587Y 0.10 deleterious(0.04) benign(0.136) TCGA-C8-A12P-01 19 31039202 31039202 C T ZNF536 Silent p.S892S 0.15 TCGA-C8-A12P-01 19 35504261 35504261 G C GRAMD1A Silent p.L236L 0.19 TCGA-C8-A12P-01 19 36035879 36035879 C T GAPDHS Silent p.L375L 0.21 TCGA-C8-A12P-01 19 36210398 36210398 G C KMT2B Missense_Mutation p.D131H 0.13 unknown(0) TCGA-C8-A12P-01 19 37383084 37383084 C G ZNF829 Missense_Mutation p.Q284H 0.38 tolerated(0.06) benign(0.158) TCGA-C8-A12P-01 19 37383374 37383374 C G ZNF829 Splice_Site p.X188_splice 0.20 TCGA-C8-A12P-01 19 37853811 37853811 C G HKR1 Missense_Mutation p.L372V 0.43 tolerated(0.2) probably_damaging(0.995) TCGA-C8-A12P-01 19 37854586 37854586 C T HKR1 Missense_Mutation p.S630L 0.37 deleterious(0.01) probably_damaging(0.964) TCGA-C8-A12P-01 19 4171688 4171688 C G CREB3L3 Missense_Mutation p.R370G 0.27 deleterious(0) probably_damaging(0.997) TCGA-C8-A12P-01 19 49362841 49362841 C G PLEKHA4 Missense_Mutation p.E193Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A12P-01 19 49938086 49938086 G A SLC17A7 Missense_Mutation p.S163L 0.20 tolerated(0.44) benign(0.017) TCGA-C8-A12P-01 19 51628276 51628276 G A SIGLEC9 Silent p.A15A 0.26 TCGA-C8-A12P-01 19 56297174 56297174 T - NLRP11 Frame_Shift_Del p.K973Nfs*4 0.09 TCGA-C8-A12P-01 1 109241882 109241882 A T PRPF38B Missense_Mutation p.E294V 0.30 deleterious(0.05) unknown(0) TCGA-C8-A12P-01 1 120539721 120539721 T A NOTCH2 Missense_Mutation p.Y217F 0.07 tolerated(0.17) benign(0.001) TCGA-C8-A12P-01 1 149898614 149898614 G C SF3B4 Missense_Mutation p.F120L 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-C8-A12P-01 1 152326999 152326999 C A FLG2 Missense_Mutation p.G1088V 0.29 unknown(0) TCGA-C8-A12P-01 1 158724994 158724994 A T OR6K6 Missense_Mutation p.Y130F 0.15 deleterious(0.02) benign(0.217) TCGA-C8-A12P-01 1 158914788 158914788 C A PYHIN1 Missense_Mutation p.P439T 0.23 tolerated(0.36) benign(0) TCGA-C8-A12P-01 1 174983888 174983888 G A MRPS14 Missense_Mutation p.R102W 0.10 tolerated(0.1) benign(0.262) TCGA-C8-A12P-01 1 175116123 175116123 G C TNN Missense_Mutation p.L1272F 0.14 deleterious(0.01) probably_damaging(0.938) TCGA-C8-A12P-01 1 17714946 17714946 G A PADI6 RNA 0.19 TCGA-C8-A12P-01 1 186064599 186064599 A C HMCN1 Missense_Mutation p.I3507L 0.05 benign(0.072) TCGA-C8-A12P-01 1 187610768 187610768 T C ERVMER61-1 RNA 0.18 TCGA-C8-A12P-01 1 193074652 193074652 C T GLRX2 Silent p.A39A 0.14 TCGA-C8-A12P-01 1 19487440 19487440 C T UBR4 Missense_Mutation p.E1793K 0.22 benign(0.014) TCGA-C8-A12P-01 1 196887392 196887392 A G CFHR4 Silent p.K530K 0.03 TCGA-C8-A12P-01 1 220804452 220804452 G A MARK1 Missense_Mutation p.D329N 0.33 deleterious(0.01) possibly_damaging(0.841) TCGA-C8-A12P-01 1 237532863 237532863 C T RYR2 Silent p.L113L 0.27 TCGA-C8-A12P-01 1 26448562 26448562 C T PDIK1L Nonsense_Mutation p.Q174* 0.19 TCGA-C8-A12P-01 1 28661182 28661182 A T MED18 Missense_Mutation p.T110S 0.04 tolerated(0.29) benign(0.341) TCGA-C8-A12P-01 1 32222176 32222176 G T BAI2 Missense_Mutation p.Q88K 0.18 tolerated(0.9) benign(0.044) TCGA-C8-A12P-01 1 32222272 32222272 C T BAI2 Missense_Mutation p.D56N 0.21 tolerated(0.05) probably_damaging(0.916) TCGA-C8-A12P-01 1 39877270 39877270 G A KIAA0754 Missense_Mutation p.D309N 0.17 benign(0.008) TCGA-C8-A12P-01 1 47882356 47882356 C T FOXE3 Silent p.L123L 0.27 TCGA-C8-A12P-01 1 70504298 70504298 C T LRRC7 Missense_Mutation p.P893S 0.09 tolerated_low_confidence(0.24) benign(0.08) TCGA-C8-A12P-01 1 71478130 71478130 A T PTGER3 Missense_Mutation p.V312D 0.19 tolerated(0.1) benign(0.155) TCGA-C8-A12P-01 1 77883374 77883374 G A AK5 Missense_Mutation p.D345N 0.20 tolerated(0.09) benign(0.004) TCGA-C8-A12P-01 1 82456485 82456485 G A LPHN2 Missense_Mutation p.E1290K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.481) TCGA-C8-A12P-01 1 92263023 92263023 C G TGFBR3 Missense_Mutation p.E23Q 0.19 tolerated(0.1) benign(0.015) TCGA-C8-A12P-01 20 1285925 1285925 G T SNPH Nonsense_Mutation p.E238* 0.20 TCGA-C8-A12P-01 20 25264873 25264873 T A PYGB Missense_Mutation p.V585D 0.11 deleterious(0) possibly_damaging(0.907) TCGA-C8-A12P-01 20 2777840 2777840 G A CPXM1 Missense_Mutation p.S277L 0.14 deleterious(0) benign(0.269) TCGA-C8-A12P-01 20 53260061 53260061 C T DOK5 Missense_Mutation p.A267V 0.19 deleterious_low_confidence(0.03) benign(0.048) TCGA-C8-A12P-01 20 61981765 61981765 C T CHRNA4 Missense_Mutation p.R333H 0.11 deleterious(0) probably_damaging(0.999) TCGA-C8-A12P-01 20 62608375 62608375 G C SAMD10 Missense_Mutation p.P132A 0.10 deleterious(0.03) probably_damaging(1) TCGA-C8-A12P-01 21 37665636 37665636 G A DOPEY2 Missense_Mutation p.E2222K 0.16 tolerated(0.57) benign(0.043) TCGA-C8-A12P-01 21 40834433 40834433 C G SH3BGR Missense_Mutation p.Q123E 0.13 tolerated(0.24) benign(0.055) TCGA-C8-A12P-01 21 43771100 43771100 G A TFF2 5'UTR 0.48 TCGA-C8-A12P-01 21 45815402 45815402 C T TRPM2 Missense_Mutation p.R634C 0.13 deleterious(0) probably_damaging(0.983) TCGA-C8-A12P-01 22 24573644 24573644 C G CABIN1 Silent p.S2126S 0.28 TCGA-C8-A12P-01 22 36587925 36587925 C T APOL4 Silent p.K84K 0.15 TCGA-C8-A12P-01 22 41626159 41626159 G A L3MBTL2 Silent p.V674V 0.12 TCGA-C8-A12P-01 22 42342476 42342476 G A CENPM Silent p.L28L 0.33 TCGA-C8-A12P-01 22 50319160 50319160 G A CRELD2 Missense_Mutation p.G371S 0.18 deleterious(0.02) probably_damaging(1) TCGA-C8-A12P-01 2 163072487 163072487 G C FAP Missense_Mutation p.R263G 0.18 deleterious(0.02) benign(0.016) TCGA-C8-A12P-01 2 166903316 166903316 C G SCN1A Missense_Mutation p.M447I 0.17 tolerated(0.06) benign(0.001) TCGA-C8-A12P-01 2 201778053 201778053 C T ORC2 Missense_Mutation p.E538K 0.29 deleterious(0) probably_damaging(0.999) TCGA-C8-A12P-01 2 20647544 20647544 C T RHOB Silent p.F106F 0.15 TCGA-C8-A12P-01 2 212589798 212589798 T A ERBB4 Intron 0.14 TCGA-C8-A12P-01 2 25065185 25065185 G A ADCY3 Silent p.D298D 0.13 TCGA-C8-A12P-01 2 28635012 28635012 G A FOSL2 Silent p.L226L 0.26 TCGA-C8-A12P-01 2 32853281 32853281 C G TTC27 5'UTR 0.18 TCGA-C8-A12P-01 2 85581475 85581475 C A RETSAT Missense_Mutation p.K52N 0.10 tolerated(0.48) benign(0.009) TCGA-C8-A12P-01 3 133664066 133664066 C G SLCO2A1 Missense_Mutation p.R445P 0.20 tolerated(0.24) benign(0.009) TCGA-C8-A12P-01 3 138180987 138180987 G A ESYT3 Missense_Mutation p.R285H 0.16 deleterious(0) probably_damaging(0.998) TCGA-C8-A12P-01 3 140397118 140397118 G C TRIM42 Missense_Mutation p.R16T 0.14 tolerated_low_confidence(0.06) unknown(0) TCGA-C8-A12P-01 3 183755826 183755826 G A HTR3D Silent p.R226R 0.14 TCGA-C8-A12P-01 3 45746631 45746631 G C SACM1L Missense_Mutation p.K45N 0.21 tolerated(0.53) benign(0.011) TCGA-C8-A12P-01 3 47058665 47058665 T - SETD2 Frame_Shift_Del p.H2538Pfs*26 0.20 TCGA-C8-A12P-01 3 98217127 98217127 C T OR5K2 Silent p.I201I 0.10 TCGA-C8-A12P-01 4 129770145 129770145 G A JADE1 Missense_Mutation p.E103K 0.12 deleterious(0.01) benign(0.262) TCGA-C8-A12P-01 4 157689125 157689125 G A PDGFC Silent p.L241L 0.22 TCGA-C8-A12P-01 4 165878596 165878596 G C FAM218A Missense_Mutation p.R141T 0.20 deleterious_low_confidence(0) benign(0) TCGA-C8-A12P-01 4 174450130 174450130 G T HAND2 Missense_Mutation p.A104D 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-C8-A12P-01 4 177046468 177046468 C T WDR17 Missense_Mutation p.A275V 0.21 deleterious(0) probably_damaging(0.995) TCGA-C8-A12P-01 4 70709918 70709918 C T SULT1E1 Missense_Mutation p.E245K 0.21 tolerated(0.47) benign(0.005) TCGA-C8-A12P-01 4 87696433 87696433 G A PTPN13 Missense_Mutation p.R1878K 0.22 tolerated(1) benign(0.005) TCGA-C8-A12P-01 4 89326043 89326043 C T HERC6 Missense_Mutation p.R370C 0.17 tolerated(0.1) benign(0) TCGA-C8-A12P-01 5 108714379 108714379 T A PJA2 Missense_Mutation p.Q270L 0.19 tolerated(0.54) benign(0) TCGA-C8-A12P-01 5 112227496 112227496 G C ZRSR1 Missense_Mutation p.E54Q 0.20 deleterious(0.02) benign(0.403) TCGA-C8-A12P-01 5 137843988 137843988 G A ETF1 3'UTR 0.21 TCGA-C8-A12P-01 5 139884690 139884708 TTTTTTTCTTCTCCTAGAC - ANKHD1 Splice_Site p.X1051_splice 0.10 TCGA-C8-A12P-01 5 140755127 140755127 G T PCDHGA6 Nonsense_Mutation p.E493* 0.25 TCGA-C8-A12P-01 5 192381 192381 C T LRRC14B Missense_Mutation p.S243L 0.21 deleterious(0) possibly_damaging(0.906) TCGA-C8-A12P-01 5 21765099 21765099 G T CDH12 Silent p.A501A 0.08 TCGA-C8-A12P-01 5 40798178 40798178 G A PRKAA1 Silent p.F38F 0.23 TCGA-C8-A12P-01 5 40959700 40959700 G C C7 Missense_Mutation p.D547H 0.13 deleterious(0) probably_damaging(0.976) TCGA-C8-A12P-01 5 82833462 82833462 C G VCAN Missense_Mutation p.S1547C 0.19 deleterious(0.01) possibly_damaging(0.885) TCGA-C8-A12P-01 5 86633865 86633865 C G RASA1 Missense_Mutation p.T325R 0.19 deleterious(0.02) benign(0.015) TCGA-C8-A12P-01 6 130370912 130370912 C G L3MBTL3 Missense_Mutation p.P76A 0.21 tolerated(0.27) benign(0.007) TCGA-C8-A12P-01 6 135239645 135239645 C T ALDH8A1 Missense_Mutation p.G458R 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A12P-01 6 165863749 165863749 C T PDE10A Silent p.L109L 0.19 TCGA-C8-A12P-01 6 17637836 17637836 T A NUP153 Missense_Mutation p.N671I 0.10 deleterious(0) probably_damaging(1) TCGA-C8-A12P-01 6 26388255 26388255 C A BTN2A2 Missense_Mutation p.P153T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A12P-01 6 27879467 27879467 C T OR2B2 Missense_Mutation p.V211M 0.20 deleterious(0.02) benign(0.298) TCGA-C8-A12P-01 6 74473391 74473391 C G CD109 Missense_Mutation p.L364V 0.32 deleterious(0) probably_damaging(0.976) TCGA-C8-A12P-01 7 100382296 100382296 C T ZAN Missense_Mutation p.S2224L 0.10 unknown(0) TCGA-C8-A12P-01 7 107601001 107601001 G T LAMB1 Missense_Mutation p.Q735K 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-C8-A12P-01 7 128480154 128480154 T C FLNC Missense_Mutation p.F497L 0.14 deleterious(0.02) possibly_damaging(0.828) TCGA-C8-A12P-01 7 140154430 140154430 C T MKRN1 Missense_Mutation p.E446K 0.18 tolerated(0.19) benign(0.271) TCGA-C8-A12P-01 7 140500217 140500217 C A BRAF Nonsense_Mutation p.E309* 0.15 TCGA-C8-A12P-01 7 150033950 150033950 C T LRRC61 5'UTR 0.25 TCGA-C8-A12P-01 7 150389940 150389940 G A GIMAP2 Missense_Mutation p.S189N 0.11 tolerated(0.2) benign(0.013) TCGA-C8-A12P-01 7 150389941 150389941 C T GIMAP2 Silent p.S189S 0.11 TCGA-C8-A12P-01 7 156437412 156437412 G C RNF32 Missense_Mutation p.E79Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-C8-A12P-01 7 30793370 30793370 A T INMT Missense_Mutation p.I60F 0.16 deleterious(0) probably_damaging(0.982) TCGA-C8-A12P-01 7 32598959 32598959 G C AVL9 Missense_Mutation p.E366D 0.22 tolerated(0.78) benign(0.003) TCGA-C8-A12P-01 7 33388717 33388717 A C BBS9 Missense_Mutation p.K456T 0.11 tolerated(0.34) benign(0.023) TCGA-C8-A12P-01 7 38403101 38403101 G C TRGV2 5'UTR 0.21 TCGA-C8-A12P-01 7 39503976 39503976 T C POU6F2 Silent p.H589H 0.12 TCGA-C8-A12P-01 7 50513274 50513274 G T FIGNL1 Nonsense_Mutation p.S571* 0.10 TCGA-C8-A12P-01 7 50680488 50680488 C T GRB10 Missense_Mutation p.E382K 0.15 deleterious(0) probably_damaging(0.956) TCGA-C8-A12P-01 7 72984983 72984983 G C TBL2 Missense_Mutation p.H400D 0.13 deleterious(0.01) possibly_damaging(0.88) TCGA-C8-A12P-01 7 8167561 8167561 A G ICA1 Silent p.G424G 0.10 TCGA-C8-A12P-01 7 87225124 87225124 T C ABCB1 Silent p.K25K 0.14 TCGA-C8-A12P-01 8 102381638 102381638 G A NACAP1 RNA 0.09 TCGA-C8-A12P-01 8 104419920 104419920 G C SLC25A32 Missense_Mutation p.Q83E 0.28 deleterious(0.02) possibly_damaging(0.588) TCGA-C8-A12P-01 8 110463293 110463294 CT - PKHD1L1 Frame_Shift_Del p.L2089Dfs*10 0.50 TCGA-C8-A12P-01 8 11180245 11180245 G A MTMR9 Missense_Mutation p.R533Q 0.25 deleterious(0.01) possibly_damaging(0.897) TCGA-C8-A12P-01 8 113314091 113314091 G A CSMD3 Missense_Mutation p.L2791F 0.11 deleterious(0) probably_damaging(0.985) TCGA-C8-A12P-01 8 143993470 143993470 C A CYP11B2 Missense_Mutation p.D480Y 0.78 deleterious(0) probably_damaging(1) TCGA-C8-A12P-01 8 43211970 43211970 A C POTEA RNA 0.62 TCGA-C8-A12P-01 8 59764365 59764365 C G TOX Splice_Site p.X138_splice 0.14 TCGA-C8-A12P-01 8 69017562 69017562 C G PREX2 Intron 0.18 TCGA-C8-A12P-01 8 74939031 74939031 G A LY96 Silent p.V113V 0.23 TCGA-C8-A12P-01 9 116094279 116094279 C T WDR31 Silent p.L8L 0.49 TCGA-C8-A12P-01 9 130486524 130486524 C G TTC16 Missense_Mutation p.T333S 0.17 deleterious(0.02) possibly_damaging(0.812) TCGA-C8-A12P-01 9 136227991 136227991 C T SURF2 Silent p.F249F 0.41 TCGA-C8-A12P-01 9 19378776 19378776 C G RPS6 Missense_Mutation p.K93N 0.15 deleterious(0.01) possibly_damaging(0.66) TCGA-C8-A12P-01 9 20622268 20622268 G T MLLT3 5'UTR 0.22 TCGA-C8-A12P-01 9 21216590 21216590 A G IFNA16 3'UTR 0.07 TCGA-C8-A12P-01 9 32491384 32491384 A G DDX58 Silent p.D202D 0.23 TCGA-C8-A12P-01 9 33944419 33944419 G A UBAP2 Nonsense_Mutation p.Q497* 0.13 TCGA-C8-A12P-01 9 35711069 35711069 C T TLN1 Missense_Mutation p.D1344N 0.15 deleterious(0.04) probably_damaging(0.995) TCGA-C8-A12P-01 9 93606343 93606343 G A SYK Missense_Mutation p.V55M 0.52 tolerated(0.25) possibly_damaging(0.878) TCGA-C8-A12P-01 9 95263288 95263288 G A ECM2 Missense_Mutation p.P551L 0.21 deleterious(0) probably_damaging(0.999) TCGA-C8-A12P-01 X 101970776 101970776 G C GPRASP2 Missense_Mutation p.E327Q 0.22 deleterious(0.03) possibly_damaging(0.719) TCGA-C8-A12P-01 X 117676706 117676706 G C DOCK11 Missense_Mutation p.E41Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-C8-A12P-01 X 127185866 127185866 A G ACTRT1 Missense_Mutation p.L107P 0.14 deleterious(0) probably_damaging(0.973) TCGA-C8-A12P-01 X 130412089 130412089 G T IGSF1 Silent p.V692V 0.16 TCGA-C8-A12P-01 X 13636126 13636126 C A EGFL6 Silent p.A352A 0.26 TCGA-C8-A12P-01 X 153660671 153660671 C T ATP6AP1 Silent p.V141V 0.14 TCGA-C8-A12P-01 X 47040723 47040723 C G RBM10 Missense_Mutation p.S453C 0.09 deleterious(0.01) possibly_damaging(0.628) TCGA-C8-A12P-01 X 47073983 47073983 G A UBA1 Missense_Mutation p.M996I 0.19 tolerated(0.17) benign(0.344) TCGA-C8-A12P-01 X 48681990 48681990 G A HDAC6 Missense_Mutation p.E1061K 0.13 tolerated(0.35) benign(0.002) TCGA-C8-A12P-01 X 49957750 49957750 A T AKAP4 Missense_Mutation p.D538E 0.19 tolerated(0.21) probably_damaging(0.999) TCGA-C8-A12P-01 X 54263733 54263733 G A WNK3 Silent p.F1422F 0.22 TCGA-C8-A12P-01 X 69625735 69625735 G A KIF4A Missense_Mutation p.E986K 0.22 deleterious(0.05) possibly_damaging(0.847) TCGA-C8-A12P-01 X 70324637 70324637 G A CXorf65 Missense_Mutation p.P101S 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-C8-A12P-01 X 9621720 9621720 C T TBL1X Nonsense_Mutation p.R32* 0.15 TCGA-C8-A12Q-01 10 104241877 104241877 C T ACTR1A Missense_Mutation p.G269E 0.15 deleterious(0) probably_damaging(0.994) TCGA-C8-A12Q-01 10 126681292 126681292 G A CTBP2 Missense_Mutation p.H917Y 0.05 deleterious(0) probably_damaging(0.991) TCGA-C8-A12Q-01 10 50916467 50916467 A G C10orf53 Missense_Mutation p.Q93R 0.22 deleterious_low_confidence(0.02) benign(0.001) TCGA-C8-A12Q-01 10 98742331 98742331 C T C10orf12 Missense_Mutation p.S395L 0.21 tolerated(0.08) benign(0.046) TCGA-C8-A12Q-01 11 11976623 11976623 C T USP47 Missense_Mutation p.H1201Y 0.09 deleterious(0.01) possibly_damaging(0.447) TCGA-C8-A12Q-01 11 19169220 19169220 G A ZDHHC13 Missense_Mutation p.R125Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-C8-A12Q-01 11 4411328 4411328 C A TRIM21 Missense_Mutation p.E104D 0.29 deleterious(0) possibly_damaging(0.867) TCGA-C8-A12Q-01 11 56237827 56237827 G A OR5M3 Silent p.V49V 0.26 TCGA-C8-A12Q-01 11 5701120 5701120 T C TRIM5 Silent p.A96A 0.37 TCGA-C8-A12Q-01 11 58746679 58746679 G A RP11-142C4.6 RNA 0.22 TCGA-C8-A12Q-01 11 58746735 58746735 G C RP11-142C4.6 RNA 0.20 TCGA-C8-A12Q-01 11 66743094 66743094 G C C11orf86 Silent p.L87L 0.31 TCGA-C8-A12Q-01 11 67050618 67050618 C G ADRBK1 Missense_Mutation p.S416C 0.10 tolerated(0.05) benign(0.021) TCGA-C8-A12Q-01 11 67926130 67926130 C G SUV420H1 Missense_Mutation p.L561F 0.06 tolerated(0.3) benign(0.005) TCGA-C8-A12Q-01 11 67926225 67926225 C T SUV420H1 Missense_Mutation p.E530K 0.09 tolerated(0.18) benign(0.01) TCGA-C8-A12Q-01 11 68305181 68305181 C G PPP6R3 Missense_Mutation p.L17V 0.08 deleterious(0) probably_damaging(0.996) TCGA-C8-A12Q-01 11 86160981 86160981 C T ME3 Missense_Mutation p.E361K 0.15 deleterious(0.04) benign(0.016) TCGA-C8-A12Q-01 12 125461919 125461919 G A DHX37 Missense_Mutation p.P286S 0.21 deleterious(0) probably_damaging(1) TCGA-C8-A12Q-01 12 130926616 130926616 G T RIMBP2 Silent p.S410S 0.17 TCGA-C8-A12Q-01 12 57925870 57925870 G A DCTN2 Silent p.L354L 0.21 TCGA-C8-A12Q-01 12 85450282 85450282 G C LRRIQ1 Missense_Mutation p.E571Q 0.38 tolerated(0.24) benign(0.037) TCGA-C8-A12Q-01 14 102516407 102516407 G A DYNC1H1 Splice_Site p.X4562_splice 0.18 TCGA-C8-A12Q-01 14 23395360 23395360 G A PRMT5 Silent p.L253L 0.25 TCGA-C8-A12Q-01 14 24644763 24644763 C T REC8 Silent p.L158L 0.25 TCGA-C8-A12Q-01 14 93650053 93650053 C A MOAP1 Nonsense_Mutation p.E179* 0.36 TCGA-C8-A12Q-01 15 101109863 101109866 AGAC - LINS Frame_Shift_Del p.S618Pfs*9 0.23 TCGA-C8-A12Q-01 15 101438383 101438383 C G ALDH1A3 Missense_Mutation p.D292E 0.33 deleterious(0) probably_damaging(0.995) TCGA-C8-A12Q-01 15 40750766 40750766 G A BAHD1 Missense_Mutation p.E35K 0.31 deleterious_low_confidence(0.01) benign(0.003) TCGA-C8-A12Q-01 15 42446363 42446363 G C PLA2G4F Missense_Mutation p.S126C 0.23 tolerated(0.07) benign(0.151) TCGA-C8-A12Q-01 15 42749157 42749157 G A ZNF106 Nonsense_Mutation p.R83* 0.22 TCGA-C8-A12Q-01 15 52652227 52652227 C T MYO5A Missense_Mutation p.E1121K 0.28 tolerated(0.05) benign(0.368) TCGA-C8-A12Q-01 15 62239428 62239428 C A VPS13C Missense_Mutation p.D1614Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-C8-A12Q-01 15 63031644 63031644 C T TLN2 Missense_Mutation p.T1262I 0.29 tolerated(0.25) benign(0.004) TCGA-C8-A12Q-01 15 70971964 70971964 C A UACA Nonsense_Mutation p.E292* 0.05 TCGA-C8-A12Q-01 15 72542358 72542358 C T PARP6 Intron 0.19 TCGA-C8-A12Q-01 16 1639761 1639761 C T IFT140 Missense_Mutation p.E219K 0.39 tolerated(0.1) benign(0.053) TCGA-C8-A12Q-01 16 31927082 31927082 T C ZNF267 Silent p.S504S 0.25 TCGA-C8-A12Q-01 16 3298943 3298943 C A MEFV Missense_Mutation p.R441L 0.25 deleterious(0) probably_damaging(0.975) TCGA-C8-A12Q-01 16 46633858 46633858 A C SHCBP1 Missense_Mutation p.D410E 0.15 tolerated(0.18) benign(0.243) TCGA-C8-A12Q-01 16 48585301 48585301 C T N4BP1 Missense_Mutation p.D705N 0.26 deleterious(0) probably_damaging(0.995) TCGA-C8-A12Q-01 16 50258849 50258849 G A PAPD5 Missense_Mutation p.R504K 0.23 deleterious(0) probably_damaging(0.999) TCGA-C8-A12Q-01 17 25937168 25937168 C T KSR1 Silent p.P652P 0.17 TCGA-C8-A12Q-01 17 26688421 26688421 G A TMEM199 3'UTR 0.16 TCGA-C8-A12Q-01 17 46128581 46128581 C G NFE2L1 Nonsense_Mutation p.S34* 0.19 TCGA-C8-A12Q-01 17 62533819 62533819 C T CEP95 Silent p.F796F 0.17 TCGA-C8-A12Q-01 17 72608766 72608766 C G CD300E 3'UTR 0.17 TCGA-C8-A12Q-01 17 73898220 73898220 A G MRPL38 Missense_Mutation p.I88T 0.28 tolerated(0.28) benign(0.004) TCGA-C8-A12Q-01 17 7578236 7578236 A T TP53 Missense_Mutation p.Y205N 0.31 deleterious(0) probably_damaging(0.948) TCGA-C8-A12Q-01 18 10742496 10742496 A G PIEZO2 Silent p.D1519D 0.52 TCGA-C8-A12Q-01 18 43668162 43668162 C G ATP5A1 Missense_Mutation p.E238Q 0.26 deleterious_low_confidence(0.01) benign(0.326) TCGA-C8-A12Q-01 19 11687591 11687591 T C ACP5 Missense_Mutation p.N110S 0.04 deleterious(0.01) possibly_damaging(0.898) TCGA-C8-A12Q-01 19 12059454 12059454 C T ZNF700 Silent p.F205F 0.16 TCGA-C8-A12Q-01 19 12885536 12885536 C T HOOK2 Missense_Mutation p.E51K 0.18 deleterious(0.04) benign(0.193) TCGA-C8-A12Q-01 19 16593522 16593522 C A CALR3 Missense_Mutation p.W251C 0.20 deleterious(0) probably_damaging(0.983) TCGA-C8-A12Q-01 19 1796813 1796813 C A ATP8B3 Silent p.L550L 0.25 TCGA-C8-A12Q-01 19 21116931 21116931 G A ZNF85 Silent p.E35E 0.17 TCGA-C8-A12Q-01 19 21117793 21117793 G A ZNF85 Missense_Mutation p.E57K 0.15 tolerated(0.07) possibly_damaging(0.839) TCGA-C8-A12Q-01 19 21117813 21117813 G C ZNF85 Missense_Mutation p.W63C 0.20 tolerated(0.09) benign(0.048) TCGA-C8-A12Q-01 19 22155448 22155448 C T ZNF208 Silent p.K796K 0.20 TCGA-C8-A12Q-01 19 3784877 3784877 G C MATK Missense_Mutation p.S27R 0.38 tolerated_low_confidence(0.05) benign(0.001) TCGA-C8-A12Q-01 19 45992785 45992785 T C RTN2 Missense_Mutation p.T354A 0.33 tolerated(0.24) benign(0.012) TCGA-C8-A12Q-01 19 53209290 53209290 C G ZNF611 Missense_Mutation p.E340Q 0.27 deleterious(0.02) possibly_damaging(0.762) TCGA-C8-A12Q-01 19 55526128 55526128 G A GP6 Silent p.F395F 0.22 TCGA-C8-A12Q-01 19 57326917 57326917 G A PEG3 Nonsense_Mutation p.R965* 0.27 TCGA-C8-A12Q-01 19 58067406 58067406 A T ZNF550 Intron 0.36 TCGA-C8-A12Q-01 19 7170648 7170648 G C INSR Silent p.L461L 0.03 TCGA-C8-A12Q-01 19 7687717 7687717 G A XAB2 Silent p.S434S 0.31 TCGA-C8-A12Q-01 1 111996914 111996914 A G ATP5F1 Silent p.K53K 0.11 TCGA-C8-A12Q-01 1 150325454 150325454 G C PRPF3 Nonstop_Mutation p.*684Sext*67 0.06 TCGA-C8-A12Q-01 1 150923915 150923915 C T SETDB1 Missense_Mutation p.S763F 0.10 deleterious(0) probably_damaging(0.938) TCGA-C8-A12Q-01 1 155058975 155058975 G T EFNA3 Missense_Mutation p.A225S 0.21 tolerated(0.28) benign(0.031) TCGA-C8-A12Q-01 1 155231906 155231906 C T SCAMP3 Missense_Mutation p.E13K 0.17 deleterious(0.03) benign(0.097) TCGA-C8-A12Q-01 1 156823931 156823931 G A INSRR Silent p.L84L 0.31 TCGA-C8-A12Q-01 1 158644181 158644181 C T SPTA1 Missense_Mutation p.D430N 0.19 tolerated(0.48) benign(0.007) TCGA-C8-A12Q-01 1 180053301 180053301 C T CEP350 Silent p.I2091I 0.12 TCGA-C8-A12Q-01 1 202266674 202266674 C T LGR6 Missense_Mutation p.A252V 0.14 deleterious(0) probably_damaging(0.986) TCGA-C8-A12Q-01 1 207103757 207103757 G A PIGR Missense_Mutation p.S734L 0.14 deleterious(0) probably_damaging(0.999) TCGA-C8-A12Q-01 1 231396288 231396288 C T GNPAT Silent p.L99L 0.21 TCGA-C8-A12Q-01 1 24978962 24978962 G A SRRM1 Missense_Mutation p.E255K 0.22 unknown(0) TCGA-C8-A12Q-01 1 36557241 36557241 G A ADPRHL2 Missense_Mutation p.D111N 0.23 deleterious(0.02) benign(0.022) TCGA-C8-A12Q-01 1 94048401 94048401 C T BCAR3 Silent p.R381R 0.40 TCGA-C8-A12Q-01 20 18724832 18724832 G A DTD1 Missense_Mutation p.R189Q 0.66 deleterious_low_confidence(0.02) benign(0.208) TCGA-C8-A12Q-01 20 3914677 3914677 C T RNF24 3'UTR 0.59 TCGA-C8-A12Q-01 20 46385992 46385992 C T SULF2 Missense_Mutation p.R39H 0.22 deleterious(0) probably_damaging(0.999) TCGA-C8-A12Q-01 20 60883775 60883775 G A ADRM1 Silent p.T394T 0.18 TCGA-C8-A12Q-01 22 22764481 22764481 C T IGLV1-40 Missense_Mutation p.R75W 0.28 deleterious_low_confidence(0) benign(0.388) TCGA-C8-A12Q-01 22 22842274 22842274 G A ZNF280B Nonsense_Mutation p.Q484* 0.32 TCGA-C8-A12Q-01 22 22843589 22843589 G C ZNF280B Missense_Mutation p.I45M 0.35 deleterious(0.01) probably_damaging(0.962) TCGA-C8-A12Q-01 22 22892625 22892625 C T PRAME Missense_Mutation p.R159Q 0.35 tolerated(0.54) benign(0.011) TCGA-C8-A12Q-01 22 24210689 24210689 G T AP000350.10 Nonsense_Mutation p.E13* 0.14 TCGA-C8-A12Q-01 22 29191398 29191399 AC - XBP1 3'UTR 0.19 TCGA-C8-A12Q-01 22 38013081 38013081 G A GGA1 Intron 0.13 TCGA-C8-A12Q-01 22 38019460 38019460 G A GGA1 Missense_Mutation p.E246K 0.38 tolerated(0.14) possibly_damaging(0.853) TCGA-C8-A12Q-01 22 38266249 38266249 C T EIF3L Missense_Mutation p.R216C 0.26 tolerated(0.14) benign(0.052) TCGA-C8-A12Q-01 22 42018039 42018039 G C XRCC6 Missense_Mutation p.E11Q 0.24 tolerated(0.1) benign(0.1) TCGA-C8-A12Q-01 22 42024199 42024199 G A XRCC6 Missense_Mutation p.E54K 0.20 deleterious(0.04) benign(0.128) TCGA-C8-A12Q-01 2 106780148 106780148 C T UXS1 Missense_Mutation p.E69K 0.24 tolerated_low_confidence(0.08) benign(0.022) TCGA-C8-A12Q-01 2 160295653 160295653 G C BAZ2B Nonsense_Mutation p.S256* 0.24 TCGA-C8-A12Q-01 2 24484451 24484451 G C ITSN2 Missense_Mutation p.S839C 0.28 deleterious(0.03) unknown(0) TCGA-C8-A12Q-01 2 48027214 48027214 C G MSH6 Missense_Mutation p.Q698E 0.22 tolerated(0.19) possibly_damaging(0.676) TCGA-C8-A12Q-01 2 65315496 65315496 C A RAB1A 3'UTR 0.21 TCGA-C8-A12Q-01 2 74383639 74383639 G C MOB1A 3'UTR 0.22 TCGA-C8-A12Q-01 2 96993914 96993914 G A ITPRIPL1 Silent p.P523P 0.24 TCGA-C8-A12Q-01 3 102181129 102181129 C G ZPLD1 Nonsense_Mutation p.S212* 0.20 TCGA-C8-A12Q-01 3 124578168 124578168 G T ITGB5 Silent p.L94L 0.54 TCGA-C8-A12Q-01 3 159976355 159976355 T A IFT80 Silent p.S764S 0.18 TCGA-C8-A12Q-01 3 38051649 38051649 G A PLCD1 Silent p.L391L 0.19 TCGA-C8-A12Q-01 3 52360796 52360796 C T DNAH1 Silent p.F209F 0.42 TCGA-C8-A12Q-01 3 93629501 93629501 G A PROS1 Missense_Mutation p.S103L 0.17 tolerated(0.07) benign(0.094) TCGA-C8-A12Q-01 3 9990812 9990812 C T PRRT3 Missense_Mutation p.E330K 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.488) TCGA-C8-A12Q-01 4 128938554 128938554 G C C4orf29 Silent p.V169V 0.27 TCGA-C8-A12Q-01 4 13605023 13605023 C G BOD1L1 Missense_Mutation p.L1167F 0.23 benign(0.132) TCGA-C8-A12Q-01 4 13605203 13605203 C G BOD1L1 Missense_Mutation p.K1107N 0.28 possibly_damaging(0.894) TCGA-C8-A12Q-01 5 140474317 140474317 A G PCDHB2 5'UTR 0.24 TCGA-C8-A12Q-01 5 156675970 156675970 C A ITK Missense_Mutation p.L582M 0.34 tolerated(0.12) possibly_damaging(0.762) TCGA-C8-A12Q-01 5 37213766 37213766 C T C5orf42 Missense_Mutation p.V939I 0.14 tolerated(0.86) benign(0.075) TCGA-C8-A12Q-01 5 37224748 37224748 C T C5orf42 Missense_Mutation p.E796K 0.21 tolerated(0.07) benign(0.048) TCGA-C8-A12Q-01 5 54329596 54329597 - AT GZMK Frame_Shift_Ins p.S214Tfs*6 0.45 TCGA-C8-A12Q-01 5 90077371 90077371 G C GPR98 Missense_Mutation p.D4403H 0.25 probably_damaging(0.988) TCGA-C8-A12Q-01 6 168319551 168319551 G T MLLT4 Missense_Mutation p.C942F 0.28 deleterious(0) probably_damaging(0.999) TCGA-C8-A12Q-01 6 32159275 32159275 C A GPSM3 Missense_Mutation p.Q117H 0.16 deleterious(0.04) possibly_damaging(0.879) TCGA-C8-A12Q-01 6 33659617 33659618 CT - ITPR3 Frame_Shift_Del p.L2458Vfs*29 0.14 TCGA-C8-A12Q-01 6 43476523 43476523 G A LRRC73 Silent p.L136L 0.28 TCGA-C8-A12Q-01 6 49928136 49928136 C A DEFB114 Missense_Mutation p.D27Y 0.20 deleterious_low_confidence(0.01) benign(0.282) TCGA-C8-A12Q-01 6 75893674 75893674 G A COL12A1 Missense_Mutation p.S395L 0.18 benign(0.027) TCGA-C8-A12Q-01 7 105660837 105660837 G C CDHR3 Missense_Mutation p.E558Q 0.23 deleterious(0.05) possibly_damaging(0.475) TCGA-C8-A12Q-01 7 11030350 11030350 G C PHF14 Missense_Mutation p.K307N 0.34 tolerated(0.06) benign(0.236) TCGA-C8-A12Q-01 7 134363747 134363749 AGA - BPGM In_Frame_Del p.E249del 0.12 TCGA-C8-A12Q-01 7 142124196 142124196 G C TRBV6-8 Silent p.L94L 0.41 TCGA-C8-A12Q-01 7 142574200 142574200 G A TRPV6 Silent p.L241L 0.05 TCGA-C8-A12Q-01 7 151970833 151970833 G A KMT2C Silent p.I323I 0.02 TCGA-C8-A12Q-01 7 43590177 43590177 G A HECW1 Missense_Mutation p.R1461H 0.15 deleterious(0.02) possibly_damaging(0.88) TCGA-C8-A12Q-01 7 56171926 56171926 G A CHCHD2 Missense_Mutation p.T98I 0.20 deleterious(0.01) possibly_damaging(0.807) TCGA-C8-A12Q-01 7 77531171 77531171 C T PHTF2 Missense_Mutation p.R93W 0.19 deleterious(0) probably_damaging(0.964) TCGA-C8-A12Q-01 7 98628312 98628312 A G SMURF1 Intron 0.22 TCGA-C8-A12Q-01 8 117768060 117768060 G C EIF3H 5'UTR 0.24 TCGA-C8-A12Q-01 8 144944180 144944180 G C EPPK1 Missense_Mutation p.S1081C 0.21 possibly_damaging(0.87) TCGA-C8-A12Q-01 9 101778269 101778269 T A COL15A1 Missense_Mutation p.D505E 0.33 tolerated_low_confidence(0.09) benign(0.01) TCGA-C8-A12Q-01 9 104323426 104323426 C G RNF20 Missense_Mutation p.Q855E 0.29 tolerated(0.09) benign(0.035) TCGA-C8-A12Q-01 9 127660909 127660909 T C GOLGA1 Silent p.Q442Q 0.22 TCGA-C8-A12Q-01 9 139309033 139309033 G A PMPCA Missense_Mutation p.D156N 0.27 tolerated(0.19) benign(0.057) TCGA-C8-A12Q-01 9 34241364 34241364 C T UBAP1 Missense_Mutation p.P178L 0.34 tolerated(0.05) benign(0.429) TCGA-C8-A12Q-01 X 147743846 147743846 C A AFF2 Missense_Mutation p.P200T 0.32 tolerated(0.06) probably_damaging(0.998) TCGA-C8-A12Q-01 X 16774820 16774820 C A SYAP1 Silent p.I253I 0.31 TCGA-C8-A12T-01 10 105377012 105377012 C G SH3PXD2A Missense_Mutation p.E260Q 0.14 deleterious(0) possibly_damaging(0.767) TCGA-C8-A12T-01 10 12291674 12291674 C T CDC123 Missense_Mutation p.S314F 0.31 deleterious(0) probably_damaging(0.936) TCGA-C8-A12T-01 10 123720991 123720991 G T NSMCE4A Missense_Mutation p.H296N 0.15 tolerated(1) benign(0.01) TCGA-C8-A12T-01 10 124802613 124802613 C T ACADSB Missense_Mutation p.H245Y 0.15 deleterious(0.03) benign(0.368) TCGA-C8-A12T-01 10 126450881 126450881 G A METTL10 Missense_Mutation p.S288L 0.33 tolerated_low_confidence(0.25) benign(0) TCGA-C8-A12T-01 10 17278368 17278368 G C VIM Missense_Mutation p.R450T 0.27 deleterious(0) benign(0.367) TCGA-C8-A12T-01 10 75525340 75525340 C G SEC24C Missense_Mutation p.I453M 0.17 deleterious(0.01) possibly_damaging(0.497) TCGA-C8-A12T-01 10 82111696 82111696 C T DYDC1 Missense_Mutation p.M70I 0.25 tolerated(0.14) benign(0.004) TCGA-C8-A12T-01 10 90773881 90773881 G A FAS Missense_Mutation p.D228N 0.47 deleterious(0.04) possibly_damaging(0.583) TCGA-C8-A12T-01 10 95518519 95518519 C G LGI1 Missense_Mutation p.S73C 0.18 deleterious(0) probably_damaging(0.99) TCGA-C8-A12T-01 11 103908037 103908037 C T DDI1 Missense_Mutation p.R163C 0.50 deleterious(0.02) benign(0.046) TCGA-C8-A12T-01 11 113934294 113934294 C T ZBTB16 Missense_Mutation p.T91M 0.30 deleterious(0) probably_damaging(0.982) TCGA-C8-A12T-01 11 120925789 120925789 G A TBCEL Missense_Mutation p.D162N 0.04 tolerated(0.62) benign(0.288) TCGA-C8-A12T-01 11 12241781 12241781 G C MICAL2 Missense_Mutation p.E328Q 0.18 deleterious(0.04) possibly_damaging(0.653) TCGA-C8-A12T-01 11 124761564 124761564 G A ROBO4 Missense_Mutation p.S561F 0.17 deleterious(0) probably_damaging(0.998) TCGA-C8-A12T-01 11 126120562 126120562 C G FAM118B Silent p.L167L 0.18 TCGA-C8-A12T-01 11 126133864 126133864 C T SRPR Missense_Mutation p.D622N 0.11 deleterious(0) probably_damaging(1) TCGA-C8-A12T-01 11 126139058 126139058 G A FOXRED1 5'UTR 0.32 TCGA-C8-A12T-01 11 1269972 1269972 C T MUC5B Silent p.I3954I 0.21 TCGA-C8-A12T-01 11 129775573 129775573 G A PRDM10 Missense_Mutation p.A1080V 0.16 tolerated_low_confidence(0.25) benign(0.033) TCGA-C8-A12T-01 11 33121162 33121162 C T CSTF3 Missense_Mutation p.E310K 0.18 deleterious(0.04) benign(0.122) TCGA-C8-A12T-01 11 46702881 46702881 G A ARHGAP1 Silent p.F166F 0.34 TCGA-C8-A12T-01 12 104388153 104388153 T A GLT8D2 Missense_Mutation p.I243F 0.35 deleterious(0) possibly_damaging(0.879) TCGA-C8-A12T-01 12 107083069 107083069 C G RFX4 Missense_Mutation p.S208C 0.24 deleterious(0.03) benign(0.066) TCGA-C8-A12T-01 12 108008853 108008853 C T BTBD11 Missense_Mutation p.H639Y 0.25 tolerated(0.72) probably_damaging(0.934) TCGA-C8-A12T-01 12 108620839 108620839 G A WSCD2 Missense_Mutation p.D293N 0.23 tolerated(0.26) benign(0.213) TCGA-C8-A12T-01 12 120582590 120582590 C T GCN1L1 Silent p.L1735L 0.14 TCGA-C8-A12T-01 12 122691843 122691843 C T B3GNT4 Missense_Mutation p.H349Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-C8-A12T-01 12 123346431 123346431 C G HIP1R 3'UTR 0.27 TCGA-C8-A12T-01 12 48920158 48920158 G A OR8S1 Silent p.V248V 0.28 TCGA-C8-A12T-01 12 53071193 53071193 G A KRT1 Silent p.L345L 0.32 TCGA-C8-A12T-01 12 56478826 56478826 C G ERBB3 Missense_Mutation p.F94L 0.37 deleterious(0.04) probably_damaging(0.984) TCGA-C8-A12T-01 12 8995942 8995942 C T A2ML1 Silent p.I487I 0.22 TCGA-C8-A12T-01 13 103287966 103287966 G T TPP2 Missense_Mutation p.V475F 0.19 deleterious(0.04) possibly_damaging(0.83) TCGA-C8-A12T-01 13 114188508 114188508 G C TMCO3 Missense_Mutation p.E498Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-C8-A12T-01 13 28197278 28197278 G C POLR1D Missense_Mutation p.R98T 0.20 deleterious(0) benign(0.01) TCGA-C8-A12T-01 13 32971062 32971062 G C BRCA2 Missense_Mutation p.E3177Q 0.32 deleterious(0.01) possibly_damaging(0.777) TCGA-C8-A12T-01 13 33110567 33110567 G A N4BP2L2 Intron 0.09 TCGA-C8-A12T-01 13 33635518 33635518 G A KL Missense_Mutation p.G768R 0.29 deleterious(0.03) probably_damaging(1) TCGA-C8-A12T-01 13 74269515 74269515 C T KLF12 3'UTR 0.19 TCGA-C8-A12T-01 13 75863144 75863144 C T TBC1D4 Missense_Mutation p.E1197K 0.05 deleterious(0.01) possibly_damaging(0.887) TCGA-C8-A12T-01 13 77779480 77779480 C T MYCBP2 Missense_Mutation p.E1214K 0.10 probably_damaging(0.995) TCGA-C8-A12T-01 14 102496269 102496269 G C DYNC1H1 Missense_Mutation p.K3252N 0.19 benign(0.215) TCGA-C8-A12T-01 14 105409722 105409722 G A AHNAK2 Silent p.S4022S 0.49 TCGA-C8-A12T-01 14 105420515 105420515 C T AHNAK2 Missense_Mutation p.E425K 0.27 benign(0.054) TCGA-C8-A12T-01 14 21486365 21486365 G C NDRG2 Missense_Mutation p.Q299E 0.28 deleterious(0.02) benign(0.317) TCGA-C8-A12T-01 14 23884421 23884421 C T MYH7 Missense_Mutation p.R1781H 0.17 deleterious(0) probably_damaging(0.995) TCGA-C8-A12T-01 14 24772295 24772295 G C NOP9 Missense_Mutation p.E387Q 0.34 tolerated(0.09) benign(0.373) TCGA-C8-A12T-01 14 39545233 39545233 G A SEC23A Missense_Mutation p.P298L 0.22 deleterious(0.02) possibly_damaging(0.795) TCGA-C8-A12T-01 14 75265199 75265199 G A YLPM1 Missense_Mutation p.D1067N 0.30 probably_damaging(0.991) TCGA-C8-A12T-01 14 75601659 75601659 G C TMED10 Missense_Mutation p.L197V 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-C8-A12T-01 15 33988430 33988430 G A RYR3 Missense_Mutation p.E1958K 0.38 benign(0.015) TCGA-C8-A12T-01 15 51291329 51291329 C T AP4E1 Nonsense_Mutation p.Q989* 0.22 TCGA-C8-A12T-01 15 64966802 64966802 C T ZNF609 Silent p.F583F 0.30 TCGA-C8-A12T-01 15 71548959 71548959 C T THSD4 Missense_Mutation p.P307L 0.20 deleterious(0.01) benign(0.167) TCGA-C8-A12T-01 15 72300180 72300180 G C MYO9A Nonsense_Mutation p.S456* 0.04 TCGA-C8-A12T-01 15 89056368 89056368 G C DET1 Missense_Mutation p.F500L 0.28 deleterious(0.01) probably_damaging(1) TCGA-C8-A12T-01 16 10783850 10783850 C T TEKT5 Silent p.K199K 0.29 TCGA-C8-A12T-01 16 2549400 2549400 C T TBC1D24 Silent p.L395L 0.37 TCGA-C8-A12T-01 16 46737649 46737649 G A MYLK3 3'Flank 0.19 TCGA-C8-A12T-01 16 4861729 4861729 C T GLYR1 Missense_Mutation p.E453K 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-C8-A12T-01 16 57694677 57694677 C G GPR56 Intron 0.22 TCGA-C8-A12T-01 16 633504 633504 C G PIGQ Nonsense_Mutation p.S718* 0.20 TCGA-C8-A12T-01 16 67655431 67655431 G T CTCF Nonsense_Mutation p.E432* 0.31 TCGA-C8-A12T-01 16 68283257 68283257 C A PLA2G15 Silent p.L64L 0.21 TCGA-C8-A12T-01 16 72827828 72827828 G C ZFHX3 Nonsense_Mutation p.S2918* 0.33 TCGA-C8-A12T-01 16 72832052 72832052 G A ZFHX3 Missense_Mutation p.S1510F 0.16 possibly_damaging(0.823) TCGA-C8-A12T-01 16 81739122 81739122 C T CMIP Missense_Mutation p.R704W 0.25 deleterious(0.01) probably_damaging(0.919) TCGA-C8-A12T-01 17 10558307 10558307 G A MYH3 Silent p.I25I 0.22 TCGA-C8-A12T-01 17 12799747 12799747 G A ARHGAP44 Silent p.V39V 0.20 TCGA-C8-A12T-01 17 1578489 1578489 G A PRPF8 Missense_Mutation p.A1006V 0.56 tolerated(0.21) probably_damaging(1) TCGA-C8-A12T-01 17 27975312 27975312 G C SSH2 Nonsense_Mutation p.S399* 0.06 TCGA-C8-A12T-01 17 40376887 40376887 C T STAT5B Splice_Site p.X96_splice 0.31 TCGA-C8-A12T-01 17 41243518 41243518 C G BRCA1 Missense_Mutation p.D1344H 0.29 deleterious(0.04) probably_damaging(1) TCGA-C8-A12T-01 17 46627598 46627598 C G HOXB3 3'UTR 0.14 TCGA-C8-A12T-01 17 46805818 46805818 G C HOXB13 Silent p.V46V 0.11 TCGA-C8-A12T-01 17 48192960 48192960 C T SAMD14 Missense_Mutation p.E264K 0.05 deleterious(0.04) possibly_damaging(0.646) TCGA-C8-A12T-01 17 60493432 60493432 C T EFCAB3 Silent p.L405L 0.04 TCGA-C8-A12T-01 17 7296197 7296197 G C TMEM256-PLSCR3 Missense_Mutation p.F194L 0.45 deleterious(0.03) benign(0.269) TCGA-C8-A12T-01 17 8215677 8215677 C T ARHGEF15 Missense_Mutation p.S107F 0.21 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-C8-A12T-01 18 52571452 52571452 C G CCDC68 3'UTR 0.40 TCGA-C8-A12T-01 18 8633207 8633207 G C RAB12 Missense_Mutation p.R103T 0.04 deleterious(0) possibly_damaging(0.793) TCGA-C8-A12T-01 19 10568682 10568682 C T PDE4A Silent p.I335I 0.26 TCGA-C8-A12T-01 19 12830080 12830080 G C TNPO2 Nonsense_Mutation p.S57* 0.26 TCGA-C8-A12T-01 19 17756583 17756583 G A UNC13A Silent p.R752R 0.38 TCGA-C8-A12T-01 19 4512408 4512408 C G PLIN4 Missense_Mutation p.D508H 0.05 deleterious(0) probably_damaging(0.954) TCGA-C8-A12T-01 19 49391390 49391390 G A TULP2 Silent p.H255H 0.22 TCGA-C8-A12T-01 19 49994223 49994223 G A RPL13A Intron 0.05 TCGA-C8-A12T-01 19 52580298 52580298 G A ZNF841 Nonsense_Mutation p.Q19* 0.11 TCGA-C8-A12T-01 19 54676942 54676942 C G TMC4 5'UTR 0.09 TCGA-C8-A12T-01 19 54695795 54695795 C T TSEN34 Missense_Mutation p.S156L 0.26 tolerated(0.19) benign(0) TCGA-C8-A12T-01 19 55014029 55014029 C T LAIR2 5'UTR 0.06 TCGA-C8-A12T-01 19 55494867 55494867 G A NLRP2 Missense_Mutation p.D601N 0.07 tolerated(0.13) possibly_damaging(0.859) TCGA-C8-A12T-01 19 55708077 55708077 C T PTPRH Silent p.Q690Q 0.07 TCGA-C8-A12T-01 19 58370357 58370357 G C ZNF587 Missense_Mutation p.E193Q 0.04 deleterious(0.02) benign(0.005) TCGA-C8-A12T-01 19 9237482 9237482 C T OR7G3 Missense_Mutation p.V49I 0.30 tolerated(0.71) benign(0.001) TCGA-C8-A12T-01 19 9362661 9362661 C T OR7E24 Silent p.D314D 0.25 TCGA-C8-A12T-01 19 9584909 9584909 C G ZNF560 Silent p.V41V 0.14 TCGA-C8-A12T-01 1 109779045 109779045 G T SARS Missense_Mutation p.D378Y 0.22 deleterious(0) probably_damaging(1) TCGA-C8-A12T-01 1 114397122 114397122 C A PTPN22 Missense_Mutation p.D241Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-C8-A12T-01 1 115276687 115276687 G A CSDE1 Missense_Mutation p.H258Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-C8-A12T-01 1 155450397 155450397 G C ASH1L Missense_Mutation p.S755C 0.29 tolerated_low_confidence(0.05) possibly_damaging(0.632) TCGA-C8-A12T-01 1 156530801 156530801 C T IQGAP3 Missense_Mutation p.V352M 0.26 tolerated(0.16) benign(0.025) TCGA-C8-A12T-01 1 160252731 160252731 C T PEX19 Intron 0.20 TCGA-C8-A12T-01 1 169390881 169390881 G T CCDC181 Missense_Mutation p.S263Y 0.27 deleterious(0.04) possibly_damaging(0.532) TCGA-C8-A12T-01 1 181680184 181680184 C T CACNA1E Missense_Mutation p.R384C 0.34 deleterious(0.02) possibly_damaging(0.689) TCGA-C8-A12T-01 1 197061060 197061060 C T ASPM Missense_Mutation p.V3141I 0.10 tolerated(0.81) benign(0) TCGA-C8-A12T-01 1 243579083 243579083 G A SDCCAG8 Missense_Mutation p.E566K 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-C8-A12T-01 1 247587541 247587541 C G NLRP3 Missense_Mutation p.L266V 0.18 tolerated(0.24) probably_damaging(0.999) TCGA-C8-A12T-01 1 27057874 27057874 C T ARID1A Nonsense_Mutation p.Q528* 0.22 TCGA-C8-A12T-01 1 32797744 32797744 G C HDAC1 Missense_Mutation p.E425Q 0.06 deleterious(0.05) benign(0.208) TCGA-C8-A12T-01 1 39751334 39751334 A T MACF1 Missense_Mutation p.Y476F 0.34 possibly_damaging(0.899) TCGA-C8-A12T-01 1 46488611 46488611 C G MAST2 Missense_Mutation p.P485A 0.27 tolerated_low_confidence(0.46) benign(0.145) TCGA-C8-A12T-01 1 52861727 52861727 C G ORC1 Missense_Mutation p.E238Q 0.27 tolerated(0.64) benign(0.14) TCGA-C8-A12T-01 1 8395594 8395594 C A SLC45A1 Missense_Mutation p.S514Y 0.28 tolerated(1) benign(0.056) TCGA-C8-A12T-01 20 23424675 23424675 G A CSTL1 Silent p.L108L 0.24 TCGA-C8-A12T-01 20 35575151 35575151 G C SAMHD1 Missense_Mutation p.L89V 0.41 deleterious(0.01) possibly_damaging(0.757) TCGA-C8-A12T-01 20 35575175 35575175 G A SAMHD1 Missense_Mutation p.L81F 0.46 deleterious(0) probably_damaging(0.989) TCGA-C8-A12T-01 20 44429770 44429770 C A DNTTIP1 Missense_Mutation p.P144T 0.12 tolerated(0.05) benign(0.029) TCGA-C8-A12T-01 20 54579058 54579058 G A CBLN4 Missense_Mutation p.S57F 0.12 deleterious(0.01) benign(0.418) TCGA-C8-A12T-01 20 61430894 61430894 G C MRGBP Missense_Mutation p.E172Q 0.10 deleterious(0.04) benign(0.378) TCGA-C8-A12T-01 20 61936827 61936827 C T COL20A1 Silent p.G84G 0.65 TCGA-C8-A12T-01 20 62162272 62162272 C T PTK6 Missense_Mutation p.E281K 0.05 tolerated(0.21) benign(0.015) TCGA-C8-A12T-01 21 45811190 45811190 C T TRPM2 Silent p.L492L 0.20 TCGA-C8-A12T-01 22 24698308 24698308 G A SPECC1L Missense_Mutation p.G37R 0.28 deleterious(0.02) benign(0.305) TCGA-C8-A12T-01 22 28503882 28503882 G C TTC28 Missense_Mutation p.Q651E 0.23 tolerated(0.61) benign(0.005) TCGA-C8-A12T-01 22 30189366 30189366 G A ASCC2 Silent p.D634D 0.10 TCGA-C8-A12T-01 22 30221244 30221244 C T ASCC2 Silent p.V81V 0.18 TCGA-C8-A12T-01 22 32272223 32272223 G T DEPDC5 Missense_Mutation p.K1250N 0.23 tolerated(0.16) possibly_damaging(0.854) TCGA-C8-A12T-01 22 38474563 38474563 G A SLC16A8 Silent p.G449G 0.52 TCGA-C8-A12T-01 2 101179434 101179434 G C PDCL3 5'UTR 0.17 TCGA-C8-A12T-01 2 152350381 152350381 C G NEB Missense_Mutation p.V8194L 0.36 benign(0.059) TCGA-C8-A12T-01 2 16740779 16740779 G C FAM49A Silent p.L262L 0.26 TCGA-C8-A12T-01 2 170732316 170732316 C G UBR3 Nonsense_Mutation p.S234* 0.10 TCGA-C8-A12T-01 2 179400472 179400472 C G TTN Missense_Mutation p.D33624H 0.07 TCGA-C8-A12T-01 2 201722462 201722462 G C CLK1 Missense_Mutation p.Q313E 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-C8-A12T-01 2 58350248 58350248 G C VRK2 Missense_Mutation p.D186H 0.25 deleterious(0) probably_damaging(1) TCGA-C8-A12T-01 2 98543924 98543924 C G TMEM131 Missense_Mutation p.E72Q 0.23 tolerated(0.06) probably_damaging(0.986) TCGA-C8-A12T-01 3 125701143 125701143 G A ROPN1B Missense_Mutation p.E143K 0.19 deleterious(0.02) benign(0.392) TCGA-C8-A12T-01 3 129134220 129134220 C T EFCAB12 Missense_Mutation p.E236K 0.09 deleterious(0) probably_damaging(0.919) TCGA-C8-A12T-01 3 132231857 132231857 G C DNAJC13 Missense_Mutation p.E1767Q 0.19 deleterious(0) possibly_damaging(0.643) TCGA-C8-A12T-01 3 135871199 135871199 G A MSL2 Missense_Mutation p.S175F 0.17 deleterious(0.02) possibly_damaging(0.465) TCGA-C8-A12T-01 3 17208372 17208372 C G TBC1D5 Missense_Mutation p.E683Q 0.26 deleterious(0) probably_damaging(0.991) TCGA-C8-A12T-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.37 deleterious(0.04) probably_damaging(0.96) TCGA-C8-A12T-01 3 185639893 185639893 T A TRA2B Missense_Mutation p.M182L 0.36 tolerated(0.16) benign(0.079) TCGA-C8-A12T-01 3 31712404 31712404 G C OSBPL10 Missense_Mutation p.L600V 0.11 deleterious(0) probably_damaging(0.999) TCGA-C8-A12T-01 3 47277646 47277646 G A KIF9 Intron 0.27 TCGA-C8-A12T-01 3 97731406 97731406 A G GABRR3 Intron 0.34 TCGA-C8-A12T-01 4 100534118 100534118 G A MTTP Missense_Mutation p.D680N 0.08 deleterious(0.05) probably_damaging(0.972) TCGA-C8-A12T-01 4 138442365 138442365 G A PCDH18 Missense_Mutation p.H1076Y 0.22 tolerated(0.31) probably_damaging(0.993) TCGA-C8-A12T-01 4 138452906 138452906 G A PCDH18 Silent p.L113L 0.15 TCGA-C8-A12T-01 4 141458650 141458650 G A ELMOD2 Silent p.R118R 0.06 TCGA-C8-A12T-01 4 152499180 152499180 G A FAM160A1 Silent p.E228E 0.22 TCGA-C8-A12T-01 4 183958919 183958919 G C FAM92A1P2 RNA 0.44 TCGA-C8-A12T-01 4 186370791 186370791 C G C4orf47 Missense_Mutation p.S308C 0.04 deleterious(0.01) possibly_damaging(0.893) TCGA-C8-A12T-01 4 20487849 20487849 G T SLIT2 Missense_Mutation p.R189I 0.21 tolerated(0.39) probably_damaging(0.999) TCGA-C8-A12T-01 4 40044934 40044934 G C RP11-333E13.4 RNA 0.17 TCGA-C8-A12T-01 4 71835729 71835729 C G MOB1B Nonsense_Mutation p.S93* 0.05 TCGA-C8-A12T-01 4 80329028 80329028 G T GK2 Nonsense_Mutation p.Y109* 0.25 TCGA-C8-A12T-01 5 112228531 112228531 G A ZRSR1 Missense_Mutation p.E399K 0.21 deleterious(0.02) benign(0.013) TCGA-C8-A12T-01 5 135391441 135391441 G A TGFBI Missense_Mutation p.D495N 0.07 tolerated(0.37) possibly_damaging(0.582) TCGA-C8-A12T-01 5 139680158 139680158 C G PFDN1 Missense_Mutation p.E15Q 0.06 tolerated(0.05) probably_damaging(0.964) TCGA-C8-A12T-01 5 178408562 178408562 G C GRM6 3'UTR 0.36 TCGA-C8-A12T-01 5 38407978 38407978 C G EGFLAM Missense_Mutation p.Q407E 0.20 deleterious(0.01) benign(0.354) TCGA-C8-A12T-01 5 54565406 54565406 G A DHX29 Silent p.L1043L 0.25 TCGA-C8-A12T-01 5 9190523 9190523 G A SEMA5A Nonsense_Mutation p.Q377* 0.05 TCGA-C8-A12T-01 6 111214197 111214197 G A AMD1 Missense_Mutation p.D265N 0.24 tolerated(0.31) possibly_damaging(0.598) TCGA-C8-A12T-01 6 138417551 138417551 G C PERP Missense_Mutation p.L99V 0.18 tolerated(0.07) possibly_damaging(0.716) TCGA-C8-A12T-01 6 152201884 152201884 C G ESR1 Nonsense_Mutation p.Y246* 0.20 TCGA-C8-A12T-01 6 160906870 160906870 C T LPAL2 RNA 0.03 TCGA-C8-A12T-01 6 27278941 27278941 G T POM121L2 Missense_Mutation p.P337T 0.17 deleterious(0.04) benign(0.034) TCGA-C8-A12T-01 6 41035041 41035041 G T OARD1 3'UTR 0.29 TCGA-C8-A12T-01 6 52149556 52149556 C A MCM3 Nonsense_Mutation p.E18* 0.36 TCGA-C8-A12T-01 6 65300723 65300723 C T EYS Missense_Mutation p.M1679I 0.22 tolerated_low_confidence(0.06) benign(0.031) TCGA-C8-A12T-01 6 79688311 79688311 C T PHIP Missense_Mutation p.E963K 0.17 deleterious(0) probably_damaging(0.98) TCGA-C8-A12T-01 7 100677515 100677515 G C MUC17 Missense_Mutation p.E940Q 0.05 probably_damaging(0.984) TCGA-C8-A12T-01 7 100679922 100679922 C G MUC17 Nonsense_Mutation p.S1742* 0.14 TCGA-C8-A12T-01 7 100681224 100681224 C G MUC17 Missense_Mutation p.S2176C 0.26 unknown(0) TCGA-C8-A12T-01 7 102982252 102982252 C G DNAJC2 Missense_Mutation p.E72Q 0.30 tolerated(0.07) possibly_damaging(0.893) TCGA-C8-A12T-01 7 108205254 108205254 C G THAP5 Missense_Mutation p.R190T 0.10 tolerated(0.51) benign(0) TCGA-C8-A12T-01 7 133886232 133886232 G A LRGUK Splice_Site p.X583_splice 0.34 TCGA-C8-A12T-01 7 150731848 150731848 C A ABCB8 Missense_Mutation p.Q233K 0.32 tolerated(0.07) benign(0.025) TCGA-C8-A12T-01 7 156436532 156436532 G C RNF32 5'UTR 0.09 TCGA-C8-A12T-01 7 17980008 17980008 C T SNX13 5'UTR 0.33 TCGA-C8-A12T-01 7 20793123 20793123 T C ABCB5 Silent p.S1190S 0.40 TCGA-C8-A12T-01 7 2946355 2946355 C T CARD11 Missense_Mutation p.V1128I 0.50 tolerated(0.42) benign(0.002) TCGA-C8-A12T-01 7 45067232 45067232 C T CCM2 5'UTR 0.13 TCGA-C8-A12T-01 7 48431515 48431515 C T ABCA13 Intron 0.32 TCGA-C8-A12T-01 7 77789588 77789588 C T MAGI2 Missense_Mutation p.E867K 0.24 tolerated(0.07) benign(0.004) TCGA-C8-A12T-01 7 99773245 99773245 C T GPC2 Missense_Mutation p.D200N 0.32 deleterious(0) possibly_damaging(0.46) TCGA-C8-A12T-01 8 104053031 104053031 C G ATP6V1C1 5'UTR 0.15 TCGA-C8-A12T-01 8 125568494 125568494 C T MTSS1 Missense_Mutation p.M461I 0.08 tolerated(0.46) benign(0.071) TCGA-C8-A12T-01 8 144696346 144696346 G A TSTA3 Silent p.F217F 0.24 TCGA-C8-A12T-01 8 1649528 1649528 G A DLGAP2 Missense_Mutation p.D962N 0.25 deleterious(0) probably_damaging(1) TCGA-C8-A12T-01 8 17067946 17067946 G A ZDHHC2 Missense_Mutation p.E303K 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-C8-A12T-01 8 21861537 21861537 G C XPO7 Missense_Mutation p.D1056H 0.24 deleterious(0) probably_damaging(0.992) TCGA-C8-A12T-01 8 27296585 27296585 G C PTK2B Missense_Mutation p.E561Q 0.12 tolerated(0.06) benign(0.009) TCGA-C8-A12T-01 8 52321106 52321106 G T PXDNL Silent p.G1026G 0.36 TCGA-C8-A12T-01 8 53071507 53071507 C A ST18 Missense_Mutation p.R586M 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-C8-A12T-01 8 61693766 61693766 G C CHD7 Missense_Mutation p.D625H 0.16 possibly_damaging(0.861) TCGA-C8-A12T-01 9 107367609 107367609 C G OR13C2 Missense_Mutation p.Q100H 0.24 deleterious(0) probably_damaging(0.997) TCGA-C8-A12T-01 9 136516800 136516800 C G DBH Missense_Mutation p.H412Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-C8-A12T-01 9 35450104 35450104 G A ATP8B5P RNA 0.25 TCGA-C8-A12T-01 9 38575638 38575638 C T ANKRD18A Missense_Mutation p.M933I 0.33 tolerated(0.46) benign(0.072) TCGA-C8-A12T-01 X 118723291 118723291 T A NKRF 3'UTR 0.19 TCGA-C8-A12T-01 X 135593306 135593306 G A HTATSF1 Missense_Mutation p.E468K 0.19 tolerated_low_confidence(0.14) possibly_damaging(0.601) TCGA-C8-A12T-01 X 27996879 27996879 C G DCAF8L1 3'UTR 0.40 TCGA-C8-A12T-01 X 3239762 3239762 C T MXRA5 Missense_Mutation p.D1322N 0.39 tolerated(0.07) benign(0.216) TCGA-C8-A12T-01 X 41646461 41646461 G C CASK Nonsense_Mutation p.S83* 0.31 TCGA-C8-A12T-01 X 47086846 47086846 G C CDK16 Missense_Mutation p.E525D 0.07 tolerated(0.33) benign(0) TCGA-C8-A12T-01 X 48214153 48214153 G C SSX3 Missense_Mutation p.S33C 0.23 deleterious(0.02) benign(0.147) TCGA-C8-A12T-01 X 49083480 49083480 G C CACNA1F Missense_Mutation p.Q410E 0.32 tolerated(0.13) benign(0.363) TCGA-C8-A12T-01 X 70321046 70321046 T G FOXO4 Missense_Mutation p.S322R 0.33 deleterious(0.04) benign(0.1) TCGA-C8-A12T-01 X 96139267 96139267 C T RPA4 5'UTR 0.32 TCGA-C8-A12U-01 10 8111513 8111514 - G GATA3 Frame_Shift_Ins p.D336Gfs*17 0.38 TCGA-C8-A12U-01 10 88428376 88428376 G A LDB3 Intron 0.24 TCGA-C8-A12U-01 11 113130919 113130919 G A NCAM1 Missense_Mutation p.V718I 0.34 tolerated(0.47) benign(0.045) TCGA-C8-A12U-01 11 32636346 32636346 C T CCDC73 Silent p.T506T 0.40 TCGA-C8-A12U-01 11 66055109 66055109 G T YIF1A Silent p.P129P 0.17 TCGA-C8-A12U-01 11 85435739 85435739 G A SYTL2 Silent p.A587A 0.06 TCGA-C8-A12U-01 11 96117839 96117839 C A CCDC82 Missense_Mutation p.D25Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-C8-A12U-01 12 105443688 105443688 G A ALDH1L2 Nonsense_Mutation p.Q562* 0.15 TCGA-C8-A12U-01 12 49089558 49089558 C T CCNT1 Missense_Mutation p.R254H 0.17 deleterious(0.02) possibly_damaging(0.662) TCGA-C8-A12U-01 12 52082854 52082854 C T SCN8A Intron 0.26 TCGA-C8-A12U-01 12 56558356 56558356 C T SMARCC2 Missense_Mutation p.G1100D 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-C8-A12U-01 12 6080875 6080875 C G VWF Missense_Mutation p.G2480R 0.53 deleterious(0) probably_damaging(0.995) TCGA-C8-A12U-01 12 96661029 96661029 T A ELK3 3'UTR 0.16 TCGA-C8-A12U-01 14 39304919 39304919 C T LINC00639 RNA 0.07 TCGA-C8-A12U-01 14 91341643 91341643 C T RPS6KA5 Missense_Mutation p.S633N 0.29 tolerated(0.21) benign(0.023) TCGA-C8-A12U-01 15 43512944 43512944 A T EPB42 Missense_Mutation p.I27N 0.08 tolerated_low_confidence(0.56) benign(0.017) TCGA-C8-A12U-01 16 50765740 50765740 G A NOD2 3'UTR 0.23 TCGA-C8-A12U-01 17 11572453 11572453 C T DNAH9 Missense_Mutation p.P935L 0.28 probably_damaging(0.979) TCGA-C8-A12U-01 17 18145941 18145941 G C LLGL1 Missense_Mutation p.G1039R 0.45 tolerated(0.37) benign(0.258) TCGA-C8-A12U-01 17 55183615 55183615 G C AKAP1 Missense_Mutation p.A264P 0.22 tolerated(0.32) benign(0.445) TCGA-C8-A12U-01 17 55193475 55193475 C T AKAP1 Missense_Mutation p.T762M 0.28 deleterious(0.03) benign(0.148) TCGA-C8-A12U-01 17 76993295 76993295 G C CANT1 Nonsense_Mutation p.S137* 0.11 TCGA-C8-A12U-01 18 52896202 52896202 G A TCF4 Silent p.N687N 0.17 TCGA-C8-A12U-01 19 33134217 33134217 G A ANKRD27 Silent p.Y227Y 0.21 TCGA-C8-A12U-01 19 41081537 41081537 G C SPTBN4 3'UTR 0.61 TCGA-C8-A12U-01 19 41281725 41281725 C A MIA Silent p.R66R 0.31 TCGA-C8-A12U-01 19 41281762 41281762 G C MIA Missense_Mutation p.G78A 0.29 tolerated(0.08) benign(0.408) TCGA-C8-A12U-01 19 4719897 4719897 G T DPP9 Missense_Mutation p.R8S 0.06 deleterious_low_confidence(0.01) benign(0.089) TCGA-C8-A12U-01 19 48239666 48239666 C T EHD2 Missense_Mutation p.P319L 0.23 deleterious(0) possibly_damaging(0.652) TCGA-C8-A12U-01 19 5925701 5925701 G C RANBP3 Missense_Mutation p.H287Q 0.22 tolerated(0.65) benign(0.002) TCGA-C8-A12U-01 1 111992083 111992083 G A ATP5F1 5'UTR 0.33 TCGA-C8-A12U-01 1 114184725 114184725 C G MAGI3 Nonsense_Mutation p.S518* 0.24 TCGA-C8-A12U-01 1 155348180 155348182 TCT - ASH1L Splice_Site p.X2075_splice 0.16 TCGA-C8-A12U-01 1 158047906 158047906 C T KIRREL Missense_Mutation p.R110W 0.07 deleterious(0) probably_damaging(0.954) TCGA-C8-A12U-01 1 169823868 169823868 T C SCYL3 Missense_Mutation p.D571G 0.33 tolerated(0.06) benign(0.033) TCGA-C8-A12U-01 1 22839582 22839582 C T ZBTB40 Missense_Mutation p.A876V 0.24 deleterious(0) possibly_damaging(0.483) TCGA-C8-A12U-01 1 237608817 237608817 T C RYR2 Silent p.F429F 0.30 TCGA-C8-A12U-01 1 27685006 27685006 G A MAP3K6 Nonsense_Mutation p.R894* 0.16 TCGA-C8-A12U-01 1 6209375 6209375 G A CHD5 Silent p.A364A 0.45 TCGA-C8-A12U-01 1 66838015 66838015 T C PDE4B Missense_Mutation p.I622T 0.23 deleterious(0.01) probably_damaging(1) TCGA-C8-A12U-01 20 31878798 31878798 C T BPIFB1 Missense_Mutation p.T134M 0.14 deleterious(0.05) benign(0.013) TCGA-C8-A12U-01 20 42162999 42162999 G T L3MBTL1 Missense_Mutation p.A537S 0.37 deleterious(0.04) possibly_damaging(0.807) TCGA-C8-A12U-01 20 42164575 42164575 C T L3MBTL1 Missense_Mutation p.R620W 0.21 deleterious(0) benign(0.118) TCGA-C8-A12U-01 20 45865097 45865097 G A ZMYND8 Silent p.A897A 0.39 TCGA-C8-A12U-01 20 60859166 60859166 T G OSBPL2 Missense_Mutation p.S313A 0.20 tolerated(0.86) benign(0.006) TCGA-C8-A12U-01 21 34923805 34923805 A T SON Missense_Mutation p.L756F 0.07 possibly_damaging(0.587) TCGA-C8-A12U-01 2 109068883 109068883 A G GCC2 Silent p.R59R 0.06 TCGA-C8-A12U-01 2 109400128 109400128 A T RANBP2 Missense_Mutation p.D3149V 0.04 tolerated(0.12) possibly_damaging(0.665) TCGA-C8-A12U-01 2 11052805 11052805 G A KCNF1 Missense_Mutation p.A85T 0.04 tolerated(0.1) probably_damaging(0.915) TCGA-C8-A12U-01 2 80816572 80816572 G A CTNNA2 Silent p.Q717Q 0.18 TCGA-C8-A12U-01 2 80816575 80816575 G C CTNNA2 Missense_Mutation p.M718I 0.19 deleterious(0) possibly_damaging(0.69) TCGA-C8-A12U-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.44 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A12U-01 5 176899139 176899140 - AA DBN1 Frame_Shift_Ins p.Q25Ffs*42 0.18 TCGA-C8-A12U-01 5 176899140 176899140 T G DBN1 Missense_Mutation p.R24S 0.17 tolerated_low_confidence(0.11) benign(0.017) TCGA-C8-A12U-01 5 21802509 21802509 C G CDH12 Missense_Mutation p.K341N 0.31 deleterious(0) probably_damaging(0.991) TCGA-C8-A12U-01 7 134136358 134136358 C A AKR1B1 Nonsense_Mutation p.E72* 0.24 TCGA-C8-A12U-01 7 64453178 64453178 C T ERV3-1 Missense_Mutation p.G76D 0.25 tolerated(0.49) benign(0.04) TCGA-C8-A12U-01 7 73151923 73151923 C A ABHD11 Missense_Mutation p.G144V 0.15 deleterious(0) probably_damaging(1) TCGA-C8-A12U-01 8 145620395 145620395 C T CPSF1 Missense_Mutation p.E1064K 0.60 tolerated(0.06) benign(0.008) TCGA-C8-A12U-01 8 19277864 19277864 C T CSGALNACT1 Silent p.L373L 0.26 TCGA-C8-A12U-01 8 22449063 22449063 G A PDLIM2 Splice_Site p.X505_splice 0.12 TCGA-C8-A12U-01 X 16721006 16721006 G T CTPS2 Missense_Mutation p.T7K 0.09 deleterious(0) probably_damaging(0.982) TCGA-C8-A12U-01 X 19854375 19854375 G A SH3KBP1 Silent p.Y10Y 0.30 TCGA-C8-A12U-01 X 64955188 64955188 G A MSN Missense_Mutation p.M285I 0.30 tolerated(0.23) benign(0.149) TCGA-C8-A12V-01 10 88416983 88416983 C T OPN4 Nonsense_Mutation p.Q108* 0.11 TCGA-C8-A12V-01 10 89692953 89692953 T A PTEN Nonsense_Mutation p.L146* 0.10 TCGA-C8-A12V-01 11 125255595 125255595 G A PKNOX2 Missense_Mutation p.D126N 0.15 tolerated(0.3) benign(0.011) TCGA-C8-A12V-01 11 65314328 65314328 C T LTBP3 Missense_Mutation p.S724N 0.12 deleterious(0) possibly_damaging(0.511) TCGA-C8-A12V-01 12 2558217 2558217 T A CACNA1C Missense_Mutation p.F185I 0.06 deleterious(0.03) benign(0.038) TCGA-C8-A12V-01 12 44693473 44693473 C T TMEM117 Missense_Mutation p.A240V 0.08 deleterious(0) probably_damaging(0.986) TCGA-C8-A12V-01 14 106967139 106967139 G C IGHV1-46 Silent p.V87V 0.08 TCGA-C8-A12V-01 14 20691924 20691924 C G OR11H6 Missense_Mutation p.P19R 0.06 tolerated(0.12) benign(0.003) TCGA-C8-A12V-01 14 25077526 25077526 C A GZMH Missense_Mutation p.G50C 0.09 deleterious(0) probably_damaging(0.975) TCGA-C8-A12V-01 14 94750387 94750387 T A SERPINA10 Missense_Mutation p.D417V 0.07 deleterious(0) probably_damaging(0.934) TCGA-C8-A12V-01 15 74239446 74239446 T C LOXL1 Missense_Mutation p.L463P 0.10 deleterious(0) probably_damaging(0.998) TCGA-C8-A12V-01 16 2002953 2002953 G A RPL3L Missense_Mutation p.P96L 0.17 deleterious(0.01) benign(0.227) TCGA-C8-A12V-01 16 76572213 76572213 C A CNTNAP4 Missense_Mutation p.L993I 0.15 tolerated(0.1) possibly_damaging(0.654) TCGA-C8-A12V-01 17 10366682 10366682 T C MYH4 Missense_Mutation p.K260E 0.08 deleterious(0) possibly_damaging(0.483) TCGA-C8-A12V-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.07 TCGA-C8-A12V-01 19 12907842 12907842 C A PRDX2 3'UTR 0.14 TCGA-C8-A12V-01 19 21580035 21580035 C T ZNF493 5'UTR 0.10 TCGA-C8-A12V-01 19 38591862 38591862 C G SIPA1L3 Silent p.V675V 0.08 TCGA-C8-A12V-01 19 43523128 43523128 G C PSG11 Missense_Mutation p.T168S 0.11 tolerated(0.2) benign(0.079) TCGA-C8-A12V-01 19 48342988 48342988 C A CRX Missense_Mutation p.L222I 0.13 deleterious(0) probably_damaging(0.999) TCGA-C8-A12V-01 19 51994852 51994852 A T SIGLEC12 3'UTR 0.07 TCGA-C8-A12V-01 1 114640409 114640409 G A SYT6 Silent p.Y400Y 0.13 TCGA-C8-A12V-01 1 1289825 1289825 G A MXRA8 Silent p.F338F 0.07 TCGA-C8-A12V-01 1 153635526 153635526 C G ILF2 Missense_Mutation p.R297T 0.17 deleterious(0.01) possibly_damaging(0.685) TCGA-C8-A12V-01 1 28823054 28823054 G A PHACTR4 Missense_Mutation p.R711H 0.06 deleterious(0) probably_damaging(0.919) TCGA-C8-A12V-01 1 6194797 6194797 A T CHD5 Missense_Mutation p.L998H 0.03 deleterious(0) probably_damaging(0.999) TCGA-C8-A12V-01 1 77763329 77763329 A G AK5 Silent p.L167L 0.10 TCGA-C8-A12V-01 1 7792621 7792621 G A CAMTA1 Missense_Mutation p.G1010S 0.14 tolerated(0.4) probably_damaging(0.999) TCGA-C8-A12V-01 20 23017092 23017092 G T SSTR4 Silent p.R324R 0.11 TCGA-C8-A12V-01 22 38082463 38082463 T G NOL12 Missense_Mutation p.F22V 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-C8-A12V-01 2 159195304 159195304 T C CCDC148 Missense_Mutation p.Y233C 0.07 tolerated(0.25) benign(0) TCGA-C8-A12V-01 2 196852681 196852681 C A DNAH7 Missense_Mutation p.K542N 0.04 tolerated(0.14) benign(0.194) TCGA-C8-A12V-01 2 61577480 61577480 G A USP34 Silent p.N474N 0.08 TCGA-C8-A12V-01 3 120469482 120469482 T C GTF2E1 Missense_Mutation p.I28T 0.10 tolerated(0.07) benign(0.122) TCGA-C8-A12V-01 3 143704681 143704681 T G C3orf58 Missense_Mutation p.I318M 0.08 deleterious(0) probably_damaging(0.923) TCGA-C8-A12V-01 3 179107927 179107927 G T MFN1 Splice_Site p.X716_splice 0.21 TCGA-C8-A12V-01 4 166385610 166385610 T G CPE Missense_Mutation p.F126V 0.10 tolerated(0.3) benign(0.182) TCGA-C8-A12V-01 4 22415263 22415263 G A GPR125 Nonsense_Mutation p.R662* 0.07 TCGA-C8-A12V-01 5 32786414 32786414 G C NPR3 Missense_Mutation p.R530P 0.21 deleterious(0) probably_damaging(1) TCGA-C8-A12V-01 6 24447190 24447190 C T GPLD1 Missense_Mutation p.A566T 0.07 tolerated(0.56) benign(0.035) TCGA-C8-A12V-01 6 52696759 52696759 T G GSTA5 Missense_Mutation p.T186P 0.09 deleterious(0.02) possibly_damaging(0.838) TCGA-C8-A12V-01 7 2290629 2290629 C T NUDT1 Missense_Mutation p.T178M 0.11 tolerated(0.08) benign(0.294) TCGA-C8-A12V-01 7 92855706 92855706 C G HEPACAM2 Missense_Mutation p.Q18H 0.08 tolerated(0.19) benign(0.001) TCGA-C8-A12V-01 7 99799614 99799643 GAACTCTGCCAGAGTTGCCTCTCAGATGTG - STAG3 In_Frame_Del p.E782_V791del 0.13 TCGA-C8-A12V-01 8 118849379 118849379 G T EXT1 Missense_Mutation p.L342I 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-C8-A12V-01 8 146202334 146202334 T C ZNF252P RNA 0.28 TCGA-C8-A12V-01 8 77618671 77618671 G A ZFHX4 Missense_Mutation p.R783Q 0.10 benign(0.417) TCGA-C8-A12V-01 X 122846729 122846729 T A THOC2 Missense_Mutation p.N34I 0.05 deleterious(0.03) benign(0.078) TCGA-C8-A12V-01 X 150828213 150828213 A G PASD1 Missense_Mutation p.Q249R 0.04 deleterious(0.01) benign(0.324) TCGA-C8-A12V-01 X 43817922 43817922 A T NDP 5'UTR 0.10 TCGA-C8-A12V-01 X 70348166 70348166 T A MED12 Missense_Mutation p.L1077Q 0.10 probably_damaging(0.984) TCGA-C8-A12V-01 X 77912969 77912969 C T ZCCHC5 Missense_Mutation p.D317N 0.06 tolerated(0.15) benign(0.018) TCGA-C8-A12V-01 X 84362976 84362976 T G SATL1 Silent p.P333P 0.06 TCGA-C8-A12W-01 11 105850322 105850322 A G GRIA4 Missense_Mutation p.I855M 0.05 tolerated(1) benign(0.002) TCGA-C8-A12W-01 11 123485478 123485478 G A GRAMD1B Silent p.P608P 0.08 TCGA-C8-A12W-01 11 67939084 67939084 T C SUV420H1 Missense_Mutation p.D249G 0.04 deleterious(0) probably_damaging(0.999) TCGA-C8-A12W-01 12 120260653 120260653 G C CIT Missense_Mutation p.S361C 0.04 deleterious(0.03) benign(0.144) TCGA-C8-A12W-01 12 52714924 52714924 G A KRT83 Missense_Mutation p.R66C 0.13 tolerated(0.08) possibly_damaging(0.587) TCGA-C8-A12W-01 12 53043708 53043708 G A KRT2 Missense_Mutation p.T284M 0.09 tolerated(0.13) probably_damaging(0.995) TCGA-C8-A12W-01 12 53552379 53552379 A T CSAD Silent p.R493R 0.08 TCGA-C8-A12W-01 12 54799461 54799461 C T ITGA5 Missense_Mutation p.V335I 0.17 tolerated(1) benign(0.003) TCGA-C8-A12W-01 12 63042362 63042362 G A PPM1H Silent p.D484D 0.16 TCGA-C8-A12W-01 12 7521559 7521559 G T CD163L1 Missense_Mutation p.Q1348K 0.17 tolerated(0.89) benign(0.001) TCGA-C8-A12W-01 12 8998703 8998703 C A A2ML1 Missense_Mutation p.T523N 0.03 tolerated(0.06) possibly_damaging(0.47) TCGA-C8-A12W-01 13 21165111 21165111 G T IFT88 Missense_Mutation p.K81N 0.45 tolerated(0.44) benign(0.043) TCGA-C8-A12W-01 14 24652224 24652224 G A IPO4 Silent p.L793L 0.11 TCGA-C8-A12W-01 15 48766722 48766722 C T FBN1 Intron 0.14 TCGA-C8-A12W-01 15 68118406 68118406 G A SKOR1 Silent p.T266T 0.17 TCGA-C8-A12W-01 16 28948420 28948420 G A CD19 Silent p.A387A 0.43 TCGA-C8-A12W-01 16 31927545 31927545 C A ZNF267 Missense_Mutation p.P659T 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-C8-A12W-01 16 57752290 57752290 G A CCDC135 Missense_Mutation p.R370K 0.13 tolerated(0.6) benign(0.012) TCGA-C8-A12W-01 17 37682239 37682239 C T CDK12 Missense_Mutation p.P1144S 0.11 probably_damaging(0.998) TCGA-C8-A12W-01 17 38545491 38545491 A G TOP2A 3'UTR 0.13 TCGA-C8-A12W-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.65 deleterious(0) probably_damaging(1) TCGA-C8-A12W-01 19 47287880 47287880 G A SLC1A5 Intron 0.14 TCGA-C8-A12W-01 19 50163080 50163080 G A IRF3 Silent p.H375H 0.34 TCGA-C8-A12W-01 1 151023031 151023058 AACTGGAAAACACATTGTTTGGTCTTGT - C1orf56 3'UTR 0.14 TCGA-C8-A12W-01 1 155823258 155823258 A G GON4L Missense_Mutation p.L105P 0.53 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-C8-A12W-01 1 158746851 158746851 G A OR6N2 Missense_Mutation p.T192I 0.54 deleterious(0.02) probably_damaging(0.991) TCGA-C8-A12W-01 1 160519760 160519760 A T CD84 Missense_Mutation p.S307T 0.22 tolerated(0.72) benign(0.002) TCGA-C8-A12W-01 1 180885377 180885377 C T KIAA1614 Silent p.N46N 0.13 TCGA-C8-A12W-01 1 19481474 19481474 G A UBR4 Silent p.F2132F 0.10 TCGA-C8-A12W-01 1 228612911 228612911 G A HIST3H3 Missense_Mutation p.P39L 0.33 deleterious_low_confidence(0.01) benign(0.23) TCGA-C8-A12W-01 1 52871475 52871475 A G PRPF38A Missense_Mutation p.D85G 0.13 deleterious(0) probably_damaging(0.934) TCGA-C8-A12W-01 1 67299695 67299695 G A WDR78 Nonsense_Mutation p.R624* 0.36 TCGA-C8-A12W-01 1 70505050 70505050 C T LRRC7 Silent p.Y1143Y 0.15 TCGA-C8-A12W-01 20 20232393 20232393 G A C20orf26 Missense_Mutation p.G772R 0.08 deleterious(0) probably_damaging(0.999) TCGA-C8-A12W-01 20 31996209 31996209 T C SNTA1 3'UTR 0.13 TCGA-C8-A12W-01 20 40054018 40054018 G A CHD6 Silent p.D1382D 0.08 TCGA-C8-A12W-01 20 60971643 60971643 C T CABLES2 Missense_Mutation p.R123Q 0.04 deleterious(0.03) benign(0.177) TCGA-C8-A12W-01 21 40570878 40570878 A C BRWD1 Missense_Mutation p.S1822A 0.13 tolerated_low_confidence(0.61) probably_damaging(0.977) TCGA-C8-A12W-01 21 47421256 47421256 G A COL6A1 Missense_Mutation p.V638I 0.12 tolerated(1) benign(0.07) TCGA-C8-A12W-01 22 38878716 38878716 G A KDELR3 3'Flank 0.31 TCGA-C8-A12W-01 2 101885991 101885991 C G CNOT11 3'UTR 0.12 TCGA-C8-A12W-01 2 179477701 179477701 T C TTN Missense_Mutation p.I16583V 0.14 TCGA-C8-A12W-01 2 179611635 179611635 G A TTN Intron 0.23 TCGA-C8-A12W-01 2 29445218 29445218 C G ALK Silent p.L1169L 0.08 TCGA-C8-A12W-01 2 29445459 29445459 C A ALK Missense_Mutation p.G1125V 0.06 deleterious(0) probably_damaging(0.994) TCGA-C8-A12W-01 2 7164587 7164587 G A RNF144A Silent p.A199A 0.38 TCGA-C8-A12W-01 3 130313159 130313159 G A COL6A6 Missense_Mutation p.R1502H 0.21 tolerated(0.66) benign(0.001) TCGA-C8-A12W-01 3 148601470 148601470 G A CPA3 Silent p.T283T 0.11 TCGA-C8-A12W-01 3 160146661 160146661 T G SMC4 Missense_Mutation p.I909R 0.17 deleterious(0) benign(0.209) TCGA-C8-A12W-01 3 167223187 167223187 T C WDR49 Missense_Mutation p.D579G 0.26 tolerated(0.34) benign(0.055) TCGA-C8-A12W-01 3 167246969 167246969 A T WDR49 Nonsense_Mutation p.Y407* 0.05 TCGA-C8-A12W-01 3 170078980 170078980 G T SKIL Silent p.P287P 0.17 TCGA-C8-A12W-01 3 46400145 46400145 T C CCR2 Intron 0.09 TCGA-C8-A12W-01 3 49212375 49212375 G C KLHDC8B Missense_Mutation p.V248L 0.14 tolerated(0.07) benign(0.342) TCGA-C8-A12W-01 3 51696693 51696693 G A RAD54L2 Missense_Mutation p.G1221R 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-C8-A12W-01 3 52833413 52833413 T A ITIH3 Missense_Mutation p.F272Y 0.17 tolerated(0.43) benign(0.145) TCGA-C8-A12W-01 3 55107854 55107854 C T CACNA2D3 Missense_Mutation p.R1051C 0.18 deleterious(0) possibly_damaging(0.732) TCGA-C8-A12W-01 3 74418526 74418526 T C CNTN3 Splice_Site p.X254_splice 0.15 TCGA-C8-A12W-01 3 78666899 78666899 C G ROBO1 Missense_Mutation p.V1390L 0.16 tolerated(0.07) possibly_damaging(0.891) TCGA-C8-A12W-01 4 74702958 74702958 C T CXCL6 Missense_Mutation p.P94L 0.24 deleterious(0) probably_damaging(0.995) TCGA-C8-A12W-01 4 82025545 82025545 A C PRKG2 Missense_Mutation p.I702R 0.05 deleterious(0) probably_damaging(0.998) TCGA-C8-A12W-01 4 843329 843329 C T GAK 3'UTR 0.16 TCGA-C8-A12W-01 5 140553707 140553707 C A PCDHB7 Missense_Mutation p.L431M 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-C8-A12W-01 5 175782616 175782616 C - KIAA1191 Frame_Shift_Del p.W55* 0.13 TCGA-C8-A12W-01 5 76128711 76128711 C T F2RL1 Silent p.N93N 0.18 TCGA-C8-A12W-01 6 160206751 160206751 T C TCP1 Intron 0.15 TCGA-C8-A12W-01 7 128452972 128452972 G A CCDC136 Missense_Mutation p.D918N 0.16 deleterious(0) benign(0.41) TCGA-C8-A12W-01 7 64439606 64439606 G A ZNF117 Missense_Mutation p.R115C 0.05 deleterious(0) possibly_damaging(0.806) TCGA-C8-A12W-01 8 110587435 110587435 C G SYBU Silent p.V564V 0.08 TCGA-C8-A12W-01 8 57354496 57354496 C T PENK Missense_Mutation p.A47T 0.05 tolerated(0.39) benign(0.196) TCGA-C8-A12W-01 8 7305324 7305324 A C SPAG11B 3'Flank 0.10 TCGA-C8-A12W-01 8 95416359 95416359 C T RAD54B Missense_Mutation p.R297Q 0.09 deleterious(0) probably_damaging(1) TCGA-C8-A12W-01 9 131513756 131513756 G A ZER1 Missense_Mutation p.P325L 0.17 deleterious(0) possibly_damaging(0.47) TCGA-C8-A12W-01 X 108887173 108887173 T A ACSL4 3'UTR 0.06 TCGA-C8-A12W-01 X 118223625 118223625 C T KIAA1210 Missense_Mutation p.R523Q 0.49 tolerated(0.22) benign(0.026) TCGA-C8-A12W-01 X 123805670 123805670 C T TENM1 Missense_Mutation p.G344D 0.46 tolerated(0.07) probably_damaging(0.944) TCGA-C8-A12W-01 X 123805671 123805671 C G TENM1 Missense_Mutation p.G344R 0.46 deleterious(0) probably_damaging(0.969) TCGA-C8-A12W-01 X 153924213 153924213 G A GAB3 Silent p.D503D 0.16 TCGA-C8-A12W-01 X 70375070 70375070 G A NLGN3 Missense_Mutation p.R195Q 0.23 deleterious(0.03) probably_damaging(0.934) TCGA-C8-A12X-01 11 1018368 1018368 G T MUC6 Nonsense_Mutation p.S1478* 0.33 TCGA-C8-A12X-01 11 123596728 123596728 T A ZNF202 Missense_Mutation p.T642S 0.16 deleterious(0.02) benign(0.063) TCGA-C8-A12X-01 11 124757090 124757090 C G ROBO4 Missense_Mutation p.A740P 0.46 tolerated(0.18) possibly_damaging(0.665) TCGA-C8-A12X-01 11 130007179 130007180 - A APLP2 Frame_Shift_Ins p.G625Rfs*20 0.34 TCGA-C8-A12X-01 11 18269480 18269480 C T SAA2 Missense_Mutation p.E27K 0.08 deleterious(0) possibly_damaging(0.85) TCGA-C8-A12X-01 11 18288513 18288513 G A SAA1 Missense_Mutation p.E27K 0.12 deleterious(0) possibly_damaging(0.732) TCGA-C8-A12X-01 11 47306022 47306022 A T MADD Missense_Mutation p.D688V 0.17 deleterious_low_confidence(0.01) benign(0.06) TCGA-C8-A12X-01 11 64978769 64978769 G A CAPN1 3'UTR 0.13 TCGA-C8-A12X-01 12 113306329 113306329 C A RPH3A Missense_Mutation p.P180H 0.37 deleterious(0.03) possibly_damaging(0.469) TCGA-C8-A12X-01 12 121461839 121461839 C T OASL Missense_Mutation p.C334Y 0.16 deleterious(0) probably_damaging(1) TCGA-C8-A12X-01 12 124349182 124349182 G A DNAH10 Missense_Mutation p.E2199K 0.41 probably_damaging(1) TCGA-C8-A12X-01 12 3600687 3600687 T G PRMT8 5'UTR 0.43 TCGA-C8-A12X-01 12 52681497 52681497 C T KRT81 Silent p.E303E 0.40 TCGA-C8-A12X-01 13 100617641 100617641 G A ZIC5 Missense_Mutation p.T661M 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-C8-A12X-01 14 53184856 53184856 T G PSMC6 Nonsense_Mutation p.L210* 0.20 TCGA-C8-A12X-01 15 53908085 53908085 T G WDR72 Missense_Mutation p.K773T 0.19 deleterious(0.03) probably_damaging(0.976) TCGA-C8-A12X-01 15 54015098 54015098 G A WDR72 Missense_Mutation p.A54V 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-C8-A12X-01 15 74177364 74177364 G T TBC1D21 Nonsense_Mutation p.E167* 0.26 TCGA-C8-A12X-01 16 11976892 11976892 G A GSPT1 Missense_Mutation p.L470F 0.17 deleterious(0.02) benign(0.221) TCGA-C8-A12X-01 16 19191724 19191724 G A SYT17 Missense_Mutation p.R65Q 0.06 tolerated(0.37) benign(0) TCGA-C8-A12X-01 16 85688513 85688513 C T GSE1 Missense_Mutation p.P238L 0.44 deleterious(0.04) unknown(0) TCGA-C8-A12X-01 17 40491344 40491344 C T STAT3 Silent p.R152R 0.08 TCGA-C8-A12X-01 17 44076959 44076959 G T STH Missense_Mutation p.C105F 0.15 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-C8-A12X-01 18 10855444 10855444 A G PIEZO2 Missense_Mutation p.L275P 0.04 deleterious(0) possibly_damaging(0.71) TCGA-C8-A12X-01 19 11474496 11474496 G C DKFZP761J1410 Missense_Mutation p.K291N 0.35 deleterious(0.04) benign(0.23) TCGA-C8-A12X-01 19 54403952 54403952 C T PRKCG Silent p.P508P 0.36 TCGA-C8-A12X-01 1 114340553 114340553 C T RSBN1 Missense_Mutation p.R270H 0.04 deleterious_low_confidence(0.04) benign(0.008) TCGA-C8-A12X-01 1 11732060 11732060 G A FBXO6 Silent p.P163P 0.16 TCGA-C8-A12X-01 1 196621079 196621079 G T CFH 5'UTR 0.43 TCGA-C8-A12X-01 1 216850754 216850754 G T ESRRG Missense_Mutation p.P51T 0.16 deleterious(0) benign(0.007) TCGA-C8-A12X-01 1 220835233 220835233 A G MARK1 Missense_Mutation p.S705G 0.16 deleterious(0) probably_damaging(0.995) TCGA-C8-A12X-01 1 229440731 229440731 A G RAB4A 3'UTR 0.07 TCGA-C8-A12X-01 1 32096174 32096175 AA - PEF1 3'UTR 0.35 TCGA-C8-A12X-01 1 32798618 32798618 G A HDAC1 Silent p.G474G 0.40 TCGA-C8-A12X-01 1 34254255 34254255 G A CSMD2 Missense_Mutation p.L497F 0.20 tolerated(0.54) possibly_damaging(0.487) TCGA-C8-A12X-01 1 45120323 45120323 C T TMEM53 Missense_Mutation p.V248M 0.25 tolerated(0.12) benign(0.104) TCGA-C8-A12X-01 1 65124496 65124496 C T CACHD1 Missense_Mutation p.R580W 0.35 deleterious(0) probably_damaging(0.993) TCGA-C8-A12X-01 20 418348 418348 G A TBC1D20 3'UTR 0.49 TCGA-C8-A12X-01 21 17199314 17199314 A T USP25 Silent p.G495G 0.17 TCGA-C8-A12X-01 2 192701381 192701381 C T SDPR Silent p.G182G 0.10 TCGA-C8-A12X-01 2 213872500 213872500 G T IKZF2 Missense_Mutation p.P389T 0.28 tolerated(0.2) possibly_damaging(0.606) TCGA-C8-A12X-01 2 27154529 27154529 C T DPYSL5 Missense_Mutation p.R231C 0.27 deleterious(0) probably_damaging(0.999) TCGA-C8-A12X-01 2 29386783 29386783 A T CLIP4 Nonsense_Mutation p.R541* 0.18 TCGA-C8-A12X-01 2 38408256 38408256 G A CYP1B1-AS1 RNA 0.29 TCGA-C8-A12X-01 3 142123820 142123820 A T XRN1 Missense_Mutation p.D604E 0.40 tolerated(0.09) benign(0.019) TCGA-C8-A12X-01 3 51669773 51669773 A C RAD54L2 Missense_Mutation p.D436A 0.17 deleterious(0.03) benign(0.297) TCGA-C8-A12X-01 3 51669790 51669790 C T RAD54L2 Nonsense_Mutation p.Q442* 0.19 TCGA-C8-A12X-01 4 88766794 88766794 C T MEPE Silent p.D258D 0.15 TCGA-C8-A12X-01 5 140482708 140482708 T C PCDHB3 3'UTR 0.16 TCGA-C8-A12X-01 5 160059168 160059168 A G ATP10B Missense_Mutation p.S530P 0.43 tolerated(0.18) benign(0.033) TCGA-C8-A12X-01 5 175717093 175717093 G A SIMC1 Intron 0.22 TCGA-C8-A12X-01 5 40777599 40777599 G A PRKAA1 Missense_Mutation p.R73C 0.04 deleterious(0) probably_damaging(0.947) TCGA-C8-A12X-01 5 50687262 50687262 C T ISL1 Missense_Mutation p.A307V 0.18 deleterious(0.02) possibly_damaging(0.517) TCGA-C8-A12X-01 5 55251984 55251984 T C IL6ST Missense_Mutation p.N379S 0.77 tolerated(0.85) benign(0) TCGA-C8-A12X-01 7 148638581 148638581 G A RNY5 RNA 0.03 TCGA-C8-A12X-01 7 148769113 148769113 G T ZNF786 Silent p.R251R 0.33 TCGA-C8-A12X-01 7 20721141 20721141 G A ABCB5 Missense_Mutation p.R574Q 0.11 deleterious(0.03) benign(0.263) TCGA-C8-A12X-01 7 38768370 38768370 T C VPS41 Missense_Mutation p.K761E 0.12 deleterious(0.01) possibly_damaging(0.905) TCGA-C8-A12X-01 7 44153272 44153272 C T AEBP1 Silent p.S963S 0.12 TCGA-C8-A12X-01 7 92826860 92826860 G C HEPACAM2 Nonsense_Mutation p.S359* 0.37 TCGA-C8-A12X-01 8 69031699 69031699 C G PREX2 Missense_Mutation p.H1152D 0.16 deleterious(0.04) benign(0.107) TCGA-C8-A12X-01 9 115038244 115038244 C T PTBP3 Silent p.S62S 0.16 TCGA-C8-A12X-01 9 2643294 2643294 G A VLDLR Missense_Mutation p.A195T 0.68 tolerated(0.07) benign(0.003) TCGA-C8-A12X-01 X 100078982 100078982 G A CSTF2 Silent p.P184P 0.19 TCGA-C8-A12X-01 X 153695619 153695619 C T PLXNA3 Silent p.P1082P 0.31 TCGA-C8-A12X-01 X 30260918 30260918 A G MAGEB4 Silent p.E222E 0.16 TCGA-C8-A12X-01 X 50090648 50090648 A G CCNB3 Silent p.T1278T 0.35 TCGA-C8-A12Y-01 10 49431219 49431219 G T FRMPD2 Silent p.T421T 0.16 TCGA-C8-A12Y-01 11 111740957 111740957 G A ALG9 Intron 0.11 TCGA-C8-A12Y-01 11 47605938 47605938 G T NDUFS3 Missense_Mutation p.D234Y 0.24 deleterious(0) probably_damaging(0.982) TCGA-C8-A12Y-01 11 64668020 64668020 C T ATG2A Silent p.T1470T 0.37 TCGA-C8-A12Y-01 11 71808758 71808758 G C LAMTOR1 3'UTR 0.07 TCGA-C8-A12Y-01 11 72492211 72492211 C A STARD10 Missense_Mutation p.A6S 0.08 tolerated_low_confidence(0.14) probably_damaging(0.935) TCGA-C8-A12Y-01 11 72492212 72492212 C G STARD10 Silent p.A5A 0.08 TCGA-C8-A12Y-01 11 78780943 78780943 C T TENM4 Missense_Mutation p.R16H 0.04 tolerated_low_confidence(0.47) possibly_damaging(0.767) TCGA-C8-A12Y-01 12 8975820 8975820 C A A2ML1 Silent p.S35S 0.30 TCGA-C8-A12Y-01 13 29005430 29005430 G A FLT1 Silent p.S277S 0.54 TCGA-C8-A12Y-01 15 33873763 33873763 G A RYR3 Missense_Mutation p.V498I 0.13 benign(0.084) TCGA-C8-A12Y-01 18 210024 210024 T C USP14 Silent p.F406F 0.33 TCGA-C8-A12Y-01 18 28574329 28574329 G A DSC3 Nonsense_Mutation p.R835* 0.28 TCGA-C8-A12Y-01 18 33785222 33785222 A G MOCOS Missense_Mutation p.I401V 0.25 tolerated(0.71) benign(0.003) TCGA-C8-A12Y-01 19 15281153 15281153 C T NOTCH3 Silent p.A1701A 0.31 TCGA-C8-A12Y-01 19 39949691 39949691 G A SUPT5H Missense_Mutation p.A146T 0.12 deleterious(0.02) benign(0.159) TCGA-C8-A12Y-01 19 57061548 57061548 C T ZFP28 Missense_Mutation p.A267V 0.20 tolerated(0.83) benign(0.002) TCGA-C8-A12Y-01 1 109649198 109649198 T C C1orf194 Missense_Mutation p.N121S 0.33 tolerated(0.42) benign(0.101) TCGA-C8-A12Y-01 1 1559254 1559254 G A MIB2 Silent p.T231T 0.29 TCGA-C8-A12Y-01 1 181702838 181702838 G A CACNA1E Missense_Mutation p.V1072I 0.12 tolerated(0.98) benign(0.103) TCGA-C8-A12Y-01 1 220089061 220089061 T A SLC30A10 Missense_Mutation p.L396F 0.40 tolerated(0.75) benign(0.002) TCGA-C8-A12Y-01 1 225380584 225380584 C A DNAH14 Missense_Mutation p.L1526I 0.08 tolerated(0.22) benign(0.001) TCGA-C8-A12Y-01 1 240286481 240286481 C A FMN2 Silent p.R540R 0.10 TCGA-C8-A12Y-01 1 26524815 26524815 C T CATSPER4 Silent p.F239F 0.03 TCGA-C8-A12Y-01 1 45501826 45501826 G A ZSWIM5 Silent p.Y680Y 0.38 TCGA-C8-A12Y-01 1 52820569 52820569 C T CC2D1B Missense_Mutation p.R767Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-C8-A12Y-01 20 61835025 61835025 G A YTHDF1 Silent p.Y89Y 0.49 TCGA-C8-A12Y-01 2 135848702 135848702 T C RAB3GAP1 Splice_Site p.X95_splice 0.45 TCGA-C8-A12Y-01 2 220357926 220357926 G T SPEG 3'UTR 0.18 TCGA-C8-A12Y-01 3 135870774 135870774 T C MSL2 Missense_Mutation p.M317V 0.24 tolerated(0.41) benign(0.001) TCGA-C8-A12Y-01 3 151056273 151056273 C A P2RY12 Missense_Mutation p.D121Y 0.07 deleterious(0) probably_damaging(1) TCGA-C8-A12Y-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.71 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A12Y-01 4 135122250 135122250 G A PABPC4L Silent p.S33S 0.32 TCGA-C8-A12Y-01 4 4249441 4249441 T G TMEM128 5'UTR 0.32 TCGA-C8-A12Y-01 5 41149444 41149444 C T C6 Missense_Mutation p.R841H 0.29 tolerated(0.19) benign(0.206) TCGA-C8-A12Y-01 5 96086348 96086348 T A CAST Missense_Mutation p.C455S 0.37 tolerated(0.13) probably_damaging(0.912) TCGA-C8-A12Y-01 6 12294560 12294560 G T EDN1 Silent p.G152G 0.31 TCGA-C8-A12Y-01 6 146275909 146275909 C T SHPRH Missense_Mutation p.E184K 0.03 tolerated_low_confidence(0.45) benign(0.097) TCGA-C8-A12Y-01 6 50811097 50811097 A G TFAP2B Missense_Mutation p.R459G 0.33 deleterious(0) probably_damaging(0.954) TCGA-C8-A12Y-01 8 30705650 30705650 C T TEX15 Missense_Mutation p.S295N 0.29 tolerated(1) benign(0) TCGA-C8-A12Y-01 8 48508402 48508402 G A SPIDR Missense_Mutation p.C376Y 0.31 tolerated(0.18) benign(0.004) TCGA-C8-A12Y-01 8 96166752 96166767 TTGTCAGAAAGCAAAA - PLEKHF2 Frame_Shift_Del p.C161Sfs*66 0.40 TCGA-C8-A12Y-01 9 137630360 137630360 C T COL5A1 Missense_Mutation p.A477V 0.15 probably_damaging(0.983) TCGA-C8-A12Y-01 9 2643403 2643403 G A VLDLR Missense_Mutation p.R231H 0.27 tolerated(0.14) benign(0.002) TCGA-C8-A12Y-01 9 99126743 99126744 - A SLC35D2 Intron 0.23 TCGA-C8-A12Y-01 X 122755020 122755020 C T THOC2 Missense_Mutation p.E1402K 0.04 deleterious(0.02) possibly_damaging(0.459) TCGA-C8-A12Y-01 X 153220820 153220820 G A HCFC1 Silent p.T1010T 0.03 TCGA-C8-A12Y-01 X 19568118 19568118 G A SH3KBP1 Missense_Mutation p.R490W 0.31 deleterious(0) probably_damaging(0.926) TCGA-C8-A12Z-01 10 49943941 49943941 C T WDFY4 Silent p.H568H 0.29 TCGA-C8-A12Z-01 10 98742267 98742267 G A C10orf12 Missense_Mutation p.D374N 0.46 tolerated(0.21) benign(0.023) TCGA-C8-A12Z-01 11 3700873 3700873 G A NUP98 Missense_Mutation p.R1662C 0.48 tolerated(0.35) benign(0.01) TCGA-C8-A12Z-01 11 61508016 61508016 C G DAGLA Silent p.A645A 0.35 TCGA-C8-A12Z-01 11 89880682 89880682 G C NAALAD2 Missense_Mutation p.E127Q 0.06 deleterious(0.04) possibly_damaging(0.649) TCGA-C8-A12Z-01 12 56748596 56748596 T C STAT2 Missense_Mutation p.Q200R 0.19 tolerated(0.09) possibly_damaging(0.897) TCGA-C8-A12Z-01 13 77817214 77817214 T C MYCBP2 Missense_Mutation p.H832R 0.33 probably_damaging(0.947) TCGA-C8-A12Z-01 14 24424404 24424404 G A DHRS4 Missense_Mutation p.E97K 0.37 tolerated(0.55) benign(0.017) TCGA-C8-A12Z-01 15 33954810 33954810 G A RYR3 Silent p.T1693T 0.29 TCGA-C8-A12Z-01 15 42436738 42436738 G A PLA2G4F Missense_Mutation p.R629C 0.11 deleterious(0) probably_damaging(0.998) TCGA-C8-A12Z-01 16 15501892 15501892 G C MPV17L Missense_Mutation p.D172H 0.36 deleterious(0) probably_damaging(0.984) TCGA-C8-A12Z-01 16 50259141 50259141 C G PAPD5 Missense_Mutation p.S567C 0.55 deleterious(0.01) possibly_damaging(0.846) TCGA-C8-A12Z-01 17 39777865 39777865 C T KRT17 Missense_Mutation p.E272K 0.40 deleterious(0.05) possibly_damaging(0.477) TCGA-C8-A12Z-01 17 61958446 61958446 G C GH2 Silent p.L78L 0.19 TCGA-C8-A12Z-01 17 62502337 62502337 G A DDX5 5'UTR 0.30 TCGA-C8-A12Z-01 17 7251307 7251307 G A ACAP1 Silent p.V470V 0.54 TCGA-C8-A12Z-01 17 7574002 7574002 C G TP53 Missense_Mutation p.R342P 0.53 deleterious(0.01) possibly_damaging(0.889) TCGA-C8-A12Z-01 18 43490684 43490684 C T EPG5 Missense_Mutation p.G1336E 0.08 deleterious(0) probably_damaging(0.998) TCGA-C8-A12Z-01 19 42270208 42270208 G C CEACAM6 Splice_Site 0.06 TCGA-C8-A12Z-01 1 152286754 152286754 C G FLG Missense_Mutation p.R203T 0.45 possibly_damaging(0.88) TCGA-C8-A12Z-01 1 154313476 154313476 C T ATP8B2 Missense_Mutation p.T427M 0.13 deleterious(0) probably_damaging(0.917) TCGA-C8-A12Z-01 1 178834294 178834294 T G ANGPTL1 Silent p.R206R 0.16 TCGA-C8-A12Z-01 1 178834752 178834752 G C ANGPTL1 Missense_Mutation p.L54V 0.22 tolerated(0.73) benign(0.039) TCGA-C8-A12Z-01 1 185089040 185089040 G C TRMT1L 3'UTR 0.38 TCGA-C8-A12Z-01 1 207669576 207669576 C T CR1 5'Flank 0.31 TCGA-C8-A12Z-01 1 94946144 94946144 C T ABCD3 Missense_Mutation p.S270F 0.42 deleterious(0) probably_damaging(0.988) TCGA-C8-A12Z-01 20 5904520 5904520 C A CHGB Missense_Mutation p.S577Y 0.13 tolerated(0.08) probably_damaging(0.914) TCGA-C8-A12Z-01 21 42807920 42807920 G C MX1 Missense_Mutation p.E88Q 0.64 deleterious(0) probably_damaging(0.998) TCGA-C8-A12Z-01 22 40807871 40807871 C A MKL1 Silent p.G773G 0.33 TCGA-C8-A12Z-01 22 43619201 43619201 C T SCUBE1 Missense_Mutation p.R410H 0.33 tolerated(0.12) benign(0.336) TCGA-C8-A12Z-01 22 51064659 51064659 C T ARSA Missense_Mutation p.R301Q 0.26 deleterious(0.02) probably_damaging(0.942) TCGA-C8-A12Z-01 2 191069955 191069955 A T HIBCH Nonsense_Mutation p.L350* 0.11 TCGA-C8-A12Z-01 2 20511409 20511409 C T PUM2 Missense_Mutation p.E122K 0.35 tolerated_low_confidence(0.22) possibly_damaging(0.769) TCGA-C8-A12Z-01 2 234164823 234164823 C T ATG16L1 Missense_Mutation p.P64L 0.23 tolerated(0.07) possibly_damaging(0.635) TCGA-C8-A12Z-01 2 236715952 236715952 G A AGAP1 Missense_Mutation p.G343S 0.33 deleterious(0.04) possibly_damaging(0.577) TCGA-C8-A12Z-01 2 86397875 86397875 C G IMMT Missense_Mutation p.E218Q 0.30 tolerated(0.13) benign(0.008) TCGA-C8-A12Z-01 3 132277859 132277859 T C ACAD11 Missense_Mutation p.M767V 0.30 deleterious(0.02) benign(0.05) TCGA-C8-A12Z-01 3 37778398 37778398 G A ITGA9 Missense_Mutation p.E720K 0.31 tolerated(0.06) benign(0.021) TCGA-C8-A12Z-01 4 102951292 102951292 G A BANK1 Missense_Mutation p.M590I 0.29 tolerated(0.31) benign(0.013) TCGA-C8-A12Z-01 4 170628037 170628037 C T CLCN3 Missense_Mutation p.T590I 0.47 deleterious(0) probably_damaging(0.996) TCGA-C8-A12Z-01 4 48584566 48584566 A C FRYL Missense_Mutation p.I645R 0.62 deleterious(0) probably_damaging(0.934) TCGA-C8-A12Z-01 5 140572714 140572714 G A PCDHB10 Missense_Mutation p.D197N 0.40 deleterious_low_confidence(0.05) benign(0.149) TCGA-C8-A12Z-01 5 176884398 176884398 G A DBN1 3'UTR 0.33 TCGA-C8-A12Z-01 5 176910532 176910532 G A PDLIM7 3'UTR 0.55 TCGA-C8-A12Z-01 5 37169245 37169245 C G C5orf42 Missense_Mutation p.R2294T 0.27 tolerated(0.61) benign(0) TCGA-C8-A12Z-01 5 67591127 67591129 AGA - PIK3R1 In_Frame_Del p.R574del 0.25 TCGA-C8-A12Z-01 5 94275825 94275825 A C MCTP1 Missense_Mutation p.V379G 0.32 deleterious(0) probably_damaging(0.99) TCGA-C8-A12Z-01 6 14131848 14131848 C T CD83 Missense_Mutation p.A84V 0.38 tolerated(0.52) benign(0.032) TCGA-C8-A12Z-01 6 142764692 142764692 G A GPR126 3'UTR 0.19 TCGA-C8-A12Z-01 6 170104120 170104120 C T PHF10 Silent p.G492G 0.36 TCGA-C8-A12Z-01 6 25771193 25771193 G C SLC17A4 Missense_Mutation p.G220A 0.04 deleterious(0) probably_damaging(1) TCGA-C8-A12Z-01 6 27805754 27805754 C T HIST1H2AK Missense_Mutation p.E122K 0.29 tolerated_low_confidence(0.2) benign(0.101) TCGA-C8-A12Z-01 6 52101728 52101728 C G IL17F 3'UTR 0.22 TCGA-C8-A12Z-01 6 96651553 96651553 C T FUT9 Silent p.S174S 0.22 TCGA-C8-A12Z-01 7 128141820 128141820 A G METTL2B Silent p.E329E 0.25 TCGA-C8-A12Z-01 7 143104718 143104718 G A EPHA1 Missense_Mutation p.P46S 0.43 tolerated(0.06) probably_damaging(1) TCGA-C8-A12Z-01 8 100994227 100994227 G A RGS22 Nonsense_Mutation p.Q1100* 0.16 TCGA-C8-A12Z-01 9 114454723 114454723 C T C9orf84 Silent p.S1114S 0.33 TCGA-C8-A12Z-01 9 134319670 134319670 G A PRRC2B Missense_Mutation p.V190I 0.41 tolerated(0.08) possibly_damaging(0.526) TCGA-C8-A12Z-01 X 1314927 1314927 G A CRLF2 Missense_Mutation p.S245F 0.28 tolerated(0.71) benign(0.01) TCGA-C8-A12Z-01 X 153668757 153668757 G A GDI1 Missense_Mutation p.R208H 0.25 deleterious(0) possibly_damaging(0.824) TCGA-C8-A12Z-01 X 70472831 70472831 G A ZMYM3 Missense_Mutation p.P92L 0.40 tolerated_low_confidence(0.31) benign(0.306) TCGA-C8-A130-01 10 27702625 27702625 C T PTCHD3 Silent p.V185V 0.17 TCGA-C8-A130-01 11 74570222 74570222 A C XRRA1 Missense_Mutation p.L376R 0.34 deleterious(0) probably_damaging(0.999) TCGA-C8-A130-01 11 89106652 89106652 A G NOX4 Silent p.T361T 0.53 TCGA-C8-A130-01 12 28459679 28459679 A C CCDC91 Missense_Mutation p.Q91P 0.19 tolerated(0.18) possibly_damaging(0.833) TCGA-C8-A130-01 12 95905673 95905673 A T METAP2 Nonsense_Mutation p.K323* 0.11 TCGA-C8-A130-01 13 114128499 114128499 A G DCUN1D2 Missense_Mutation p.F154L 0.21 deleterious(0.01) possibly_damaging(0.689) TCGA-C8-A130-01 13 75936260 75936260 C T TBC1D4 Missense_Mutation p.E328K 0.36 tolerated(0.13) possibly_damaging(0.487) TCGA-C8-A130-01 14 106174386 106174386 C T IGHA1 Missense_Mutation p.E135K 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-C8-A130-01 14 20345239 20345239 G T OR4K2 Silent p.L271L 0.21 TCGA-C8-A130-01 14 21571576 21571576 G A ZNF219 5'Flank 0.15 TCGA-C8-A130-01 14 79933659 79933659 G A NRXN3 Missense_Mutation p.V747M 0.22 deleterious(0) benign(0.057) TCGA-C8-A130-01 15 38591723 38591723 G A SPRED1 Missense_Mutation p.R61H 0.28 tolerated(1) benign(0.002) TCGA-C8-A130-01 15 74468053 74468053 T C ISLR Missense_Mutation p.V285A 0.23 tolerated(0.16) possibly_damaging(0.484) TCGA-C8-A130-01 16 19481012 19481012 G A TMC5 Silent p.K549K 0.20 TCGA-C8-A130-01 17 36977282 36977308 CTCCACATTCCTGAGGGTCTGCGGGTG - CWC25 In_Frame_Del p.H13_E21del 0.22 TCGA-C8-A130-01 17 73235466 73235466 C T GGA3 Silent p.S590S 0.07 TCGA-C8-A130-01 17 7578538 7578538 T - TP53 Frame_Shift_Del p.N131Tfs*39 0.44 TCGA-C8-A130-01 18 33721133 33721133 G C ELP2 Missense_Mutation p.R251T 0.23 tolerated(0.06) benign(0.091) TCGA-C8-A130-01 19 10671742 10671742 G A KRI1 Silent p.A206A 0.10 TCGA-C8-A130-01 19 11685975 11685975 G A ACP5 Silent p.N276N 0.20 TCGA-C8-A130-01 19 15582885 15582885 G A PGLYRP2 Missense_Mutation p.R387C 0.17 deleterious(0.01) possibly_damaging(0.836) TCGA-C8-A130-01 19 36110392 36110392 C T HAUS5 Missense_Mutation p.R416W 0.17 deleterious(0) possibly_damaging(0.852) TCGA-C8-A130-01 19 55286875 55286875 C G KIR2DL1 Nonsense_Mutation p.S210* 0.03 TCGA-C8-A130-01 1 167095568 167095568 C T DUSP27 Silent p.N400N 0.37 TCGA-C8-A130-01 1 176913118 176913118 C A ASTN1 Silent p.L762L 0.34 TCGA-C8-A130-01 1 208227817 208227817 G A PLXNA2 Silent p.G935G 0.09 TCGA-C8-A130-01 1 225568025 225568025 G A DNAH14 Splice_Site p.X3184_splice 0.16 TCGA-C8-A130-01 22 21272296 21272296 A G CRKL Missense_Mutation p.Q25R 0.63 tolerated(0.12) benign(0.105) TCGA-C8-A130-01 22 26422713 26422713 G A MYO18B Missense_Mutation p.R2258Q 0.29 deleterious(0.03) possibly_damaging(0.469) TCGA-C8-A130-01 22 32815386 32815386 C T BPIFC Missense_Mutation p.R408H 0.26 deleterious(0.04) probably_damaging(0.991) TCGA-C8-A130-01 2 128463985 128463985 C T WDR33 Missense_Mutation p.R1308Q 0.28 deleterious_low_confidence(0) unknown(0) TCGA-C8-A130-01 2 202245617 202245617 G C TRAK2 Silent p.L798L 0.38 TCGA-C8-A130-01 2 228883499 228883499 C A SPHKAP Missense_Mutation p.D691Y 0.30 deleterious(0.03) benign(0.101) TCGA-C8-A130-01 2 26696148 26696148 G A OTOF Silent p.N1195N 0.15 TCGA-C8-A130-01 2 31412212 31412212 C T CAPN14 Missense_Mutation p.V474M 0.38 deleterious(0) probably_damaging(0.91) TCGA-C8-A130-01 2 48757097 48757097 C T STON1-GTF2A1L 5'UTR 0.24 TCGA-C8-A130-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.52 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A130-01 3 65342480 65342480 C T MAGI1 Missense_Mutation p.R1321Q 0.32 tolerated(0.1) benign(0.012) TCGA-C8-A130-01 4 154547305 154547305 G T KIAA0922 Missense_Mutation p.S1351I 0.29 deleterious(0.01) benign(0.185) TCGA-C8-A130-01 5 176885058 176885058 C G DBN1 Splice_Site p.X594_splice 0.67 TCGA-C8-A130-01 6 105244542 105244542 G C HACE1 Silent p.L268L 0.88 TCGA-C8-A130-01 6 26045726 26045726 G C HIST1H3C Missense_Mutation p.A30P 0.19 deleterious_low_confidence(0) benign(0.09) TCGA-C8-A130-01 6 28214862 28214862 C T ZKSCAN4 Silent p.L221L 0.19 TCGA-C8-A130-01 6 52551053 52551053 T A TMEM14A 3'UTR 0.31 TCGA-C8-A130-01 7 44197793 44197793 T A GCK Intron 0.16 TCGA-C8-A130-01 8 145692700 145692700 C T KIFC2 Missense_Mutation p.R149W 0.35 deleterious_low_confidence(0.02) benign(0.394) TCGA-C8-A130-01 8 69028097 69028097 T C PREX2 Missense_Mutation p.C1086R 0.04 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-C8-A130-01 8 8748257 8748257 G A MFHAS1 Missense_Mutation p.A771V 0.11 tolerated(1) benign(0) TCGA-C8-A130-01 9 116018423 116018424 - A SLC31A1 5'UTR p.M1? 0.25 TCGA-C8-A130-01 9 15469016 15469016 G A PSIP1 Missense_Mutation p.S382L 0.27 deleterious(0) probably_damaging(0.991) TCGA-C8-A130-01 9 99227714 99227714 G A HABP4 Missense_Mutation p.R203K 0.08 tolerated(0.13) benign(0.077) TCGA-C8-A130-01 X 114524334 114524334 G A LUZP4 Silent p.S3S 0.15 TCGA-C8-A130-01 X 153069877 153069877 C T PDZD4 Missense_Mutation p.R414H 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-C8-A130-01 X 154317544 154317544 G A BRCC3 Missense_Mutation p.R137H 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-C8-A130-01 X 47489181 47489181 G C CFP Silent p.T21T 0.28 TCGA-C8-A130-01 X 48771383 48771383 G A PIM2 3'UTR 0.32 TCGA-C8-A130-01 X 69510350 69510350 G T KIF4A Silent p.L14L 0.17 TCGA-C8-A131-01 10 105179384 105179384 C T PDCD11 Silent p.L732L 0.17 TCGA-C8-A131-01 10 26243835 26243835 C T MYO3A Silent p.N67N 0.12 TCGA-C8-A131-01 10 7801824 7801824 A G KIN Intron 0.13 TCGA-C8-A131-01 11 117089867 117089867 C A PCSK7 Missense_Mutation p.R446L 0.23 tolerated(0.31) benign(0.01) TCGA-C8-A131-01 11 4116249 4116249 G T RRM1 Missense_Mutation p.V3L 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C8-A131-01 11 94759830 94759830 G T KDM4E Missense_Mutation p.G370V 0.25 deleterious(0.02) probably_damaging(0.957) TCGA-C8-A131-01 12 11183883 11183883 C G TAS2R31 Missense_Mutation p.V18L 0.24 tolerated(0.13) possibly_damaging(0.472) TCGA-C8-A131-01 12 115118711 115118711 G - TBX3 Frame_Shift_Del p.N211Tfs*32 0.10 TCGA-C8-A131-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.38 deleterious(0) possibly_damaging(0.479) TCGA-C8-A131-01 12 6670928 6670928 C T NOP2 Missense_Mutation p.G403E 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A131-01 12 96360231 96360231 C A AMDHD1 Missense_Mutation p.H380N 0.27 tolerated(0.05) possibly_damaging(0.551) TCGA-C8-A131-01 13 50134175 50134175 C A RCBTB1 Missense_Mutation p.G108V 0.15 deleterious(0) probably_damaging(0.986) TCGA-C8-A131-01 13 99575591 99575591 C T DOCK9 Missense_Mutation p.V151I 0.22 tolerated(0.31) benign(0.011) TCGA-C8-A131-01 14 20873630 20873630 C A TEP1 Nonsense_Mutation p.E284* 0.31 TCGA-C8-A131-01 14 23894523 23894523 G - MYH7 Frame_Shift_Del p.R798Efs*16 0.45 TCGA-C8-A131-01 14 33291628 33291628 G A AKAP6 Missense_Mutation p.D1537N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-C8-A131-01 14 61444338 61444338 T C TRMT5 Missense_Mutation p.K229R 0.29 deleterious(0) probably_damaging(0.955) TCGA-C8-A131-01 15 80750279 80750279 C T ARNT2 Silent p.F52F 0.19 TCGA-C8-A131-01 16 2090176 2090176 G A NTHL1 Missense_Mutation p.S258F 0.22 deleterious(0.04) possibly_damaging(0.615) TCGA-C8-A131-01 16 56642527 56642527 C T MT2A 5'UTR 0.17 TCGA-C8-A131-01 16 70295012 70295012 G A AARS Silent p.L574L 0.30 TCGA-C8-A131-01 17 10358583 10358583 G T MYH4 Missense_Mutation p.P735Q 0.12 deleterious(0) probably_damaging(1) TCGA-C8-A131-01 17 27001584 27001584 G A SUPT6H Missense_Mutation p.D100N 0.36 deleterious(0.02) unknown(0) TCGA-C8-A131-01 17 36453165 36453165 C T MRPL45 Missense_Mutation p.P6S 0.11 tolerated_low_confidence(0.25) benign(0.003) TCGA-C8-A131-01 17 48646591 48646591 C G CACNA1G Silent p.G140G 0.33 TCGA-C8-A131-01 17 60759592 60759592 G A MRC2 Intron 0.56 TCGA-C8-A131-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.32 tolerated(0.11) benign(0.308) TCGA-C8-A131-01 17 79429821 79429821 G A RP11-1055B8.7 Missense_Mutation p.G2480D 0.35 probably_damaging(0.917) TCGA-C8-A131-01 18 61570566 61570567 - T SERPINB2 3'UTR 0.19 TCGA-C8-A131-01 19 38951038 38951038 G A RYR1 Missense_Mutation p.R795H 0.18 probably_damaging(0.995) TCGA-C8-A131-01 19 44610447 44610447 G C ZNF224 Intron 0.08 TCGA-C8-A131-01 19 58153270 58153270 G A ZNF211 Silent p.Q537Q 0.10 TCGA-C8-A131-01 19 7601348 7601348 C T PNPLA6 Missense_Mutation p.T119I 0.38 tolerated(0.12) benign(0.061) TCGA-C8-A131-01 19 9800857 9800857 C T ZNF812 Missense_Mutation p.G441E 0.34 deleterious(0.03) probably_damaging(0.993) TCGA-C8-A131-01 1 110018244 110018244 C T SYPL2 Silent p.S57S 0.09 TCGA-C8-A131-01 1 169541460 169541460 T G F5 Missense_Mutation p.E124D 0.14 deleterious(0.02) possibly_damaging(0.884) TCGA-C8-A131-01 1 180151338 180151338 C T QSOX1 Silent p.G212G 0.22 TCGA-C8-A131-01 1 222801838 222801838 G A MIA3 Missense_Mutation p.G426R 0.08 tolerated(0.48) benign(0.009) TCGA-C8-A131-01 1 230503869 230503869 G T PGBD5 Intron 0.35 TCGA-C8-A131-01 1 236902735 236902735 A - ACTN2 Frame_Shift_Del p.E337Gfs*98 0.25 TCGA-C8-A131-01 1 243329334 243329334 C T CEP170 Missense_Mutation p.R643Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-C8-A131-01 1 36759501 36759501 G A THRAP3 Missense_Mutation p.D694N 0.16 deleterious(0.02) benign(0.418) TCGA-C8-A131-01 1 36759502 36759502 A T THRAP3 Missense_Mutation p.D694V 0.16 deleterious(0) possibly_damaging(0.624) TCGA-C8-A131-01 1 53416438 53416438 T A SCP2 Missense_Mutation p.C71S 0.09 tolerated(0.35) benign(0.005) TCGA-C8-A131-01 1 85135415 85135415 C A SSX2IP Missense_Mutation p.L125F 0.12 deleterious(0.05) probably_damaging(0.998) TCGA-C8-A131-01 20 60881225 60881225 C T ADRM1 Intron 0.28 TCGA-C8-A131-01 22 36900716 36900716 C T FOXRED2 Missense_Mutation p.E209K 0.09 tolerated(0.4) benign(0.02) TCGA-C8-A131-01 2 170592266 170592266 A C KLHL23 Missense_Mutation p.T248P 0.11 tolerated(0.13) benign(0.099) TCGA-C8-A131-01 2 27169788 27169788 C T DPYSL5 Silent p.I540I 0.16 TCGA-C8-A131-01 2 42997323 42997323 G A HAAO Silent p.F148F 0.37 TCGA-C8-A131-01 2 74651009 74651009 T C WDR54 Missense_Mutation p.F145S 0.35 deleterious(0) probably_damaging(0.996) TCGA-C8-A131-01 2 99443462 99443462 C T KIAA1211L Silent p.S237S 0.16 TCGA-C8-A131-01 3 122345796 122345796 C A PARP15 Missense_Mutation p.L452M 0.34 tolerated(0.58) possibly_damaging(0.529) TCGA-C8-A131-01 3 147113686 147113686 A G ZIC4 Missense_Mutation p.V264A 0.10 deleterious(0) probably_damaging(0.973) TCGA-C8-A131-01 3 165547794 165547794 G T BCHE Missense_Mutation p.T343N 0.26 tolerated(0.06) probably_damaging(0.924) TCGA-C8-A131-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.21 deleterious(0.03) probably_damaging(0.983) TCGA-C8-A131-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A131-01 3 184055444 184055444 A G FAM131A Missense_Mutation p.K9R 0.12 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-C8-A131-01 3 47098670 47098670 G A SETD2 Missense_Mutation p.P2202S 0.09 tolerated(0.49) benign(0.004) TCGA-C8-A131-01 3 72495757 72495757 C T RYBP Silent p.A105A 0.07 TCGA-C8-A131-01 4 104115811 104115811 C T CENPE Missense_Mutation p.E170K 0.21 probably_damaging(0.999) TCGA-C8-A131-01 4 185650156 185650157 - CACGT CENPU Frame_Shift_Ins p.F44Tfs*80 0.08 TCGA-C8-A131-01 4 77955764 77955768 TTTTT - SEPT11 3'UTR 0.35 TCGA-C8-A131-01 5 129040021 129040021 G T ADAMTS19 Missense_Mutation p.R1077S 0.16 tolerated(0.2) benign(0.098) TCGA-C8-A131-01 5 140389715 140389715 T C PCDHAC1 3'UTR 0.07 TCGA-C8-A131-01 5 140589610 140589610 C G PCDHB12 Missense_Mutation p.D377E 0.23 tolerated_low_confidence(0.56) benign(0.026) TCGA-C8-A131-01 5 148730599 148730599 C - GRPEL2 Frame_Shift_Del p.R145Efs*6 0.17 TCGA-C8-A131-01 5 38904586 38904586 C A OSMR Missense_Mutation p.N422K 0.14 tolerated(0.89) benign(0.01) TCGA-C8-A131-01 6 41000851 41000851 G A UNC5CL Missense_Mutation p.R241C 0.29 tolerated(0.19) benign(0.001) TCGA-C8-A131-01 8 88885659 88885659 G T DCAF4L2 Missense_Mutation p.Q181K 0.23 tolerated(1) benign(0.002) TCGA-C8-A131-01 9 130430385 130430385 C T STXBP1 Missense_Mutation p.A274V 0.26 tolerated(0.23) benign(0.045) TCGA-C8-A131-01 9 136412259 136412259 G A ADAMTSL2 Missense_Mutation p.R288Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-C8-A131-01 9 139231983 139231983 T C GPSM1 Silent p.L222L 0.23 TCGA-C8-A131-01 9 8317921 8317921 G A PTPRD Missense_Mutation p.R1898C 0.41 deleterious(0) probably_damaging(0.999) TCGA-C8-A131-01 X 117699984 117699984 G A DOCK11 Missense_Mutation p.R237H 0.11 deleterious(0) probably_damaging(0.999) TCGA-C8-A131-01 X 117926012 117926012 T A IL13RA1 3'UTR 0.27 TCGA-C8-A131-01 X 148770512 148770512 T C MAGEA11 5'UTR 0.11 TCGA-C8-A131-01 X 152722094 152722094 G A HAUS7 Silent p.F164F 0.19 TCGA-C8-A131-01 X 154157239 154157240 - T F8 Frame_Shift_Ins p.T1609Nfs*4 0.11 TCGA-C8-A131-01 X 154282929 154282929 G A FUNDC2 Silent p.L184L 0.10 TCGA-C8-A131-01 X 30877718 30877718 G A TAB3 5'UTR 0.14 TCGA-C8-A131-01 X 73961885 73961885 T C KIAA2022 Missense_Mutation p.H836R 0.06 tolerated(0.06) benign(0.109) TCGA-C8-A132-01 10 100195456 100195456 T G HPS1 Missense_Mutation p.K64T 0.26 deleterious(0.01) probably_damaging(1) TCGA-C8-A132-01 10 97157022 97157022 C T SORBS1 Missense_Mutation p.D393N 0.25 deleterious(0) probably_damaging(0.997) TCGA-C8-A132-01 10 98078170 98078170 C G DNTT Missense_Mutation p.Q89E 0.17 tolerated(0.85) benign(0.018) TCGA-C8-A132-01 11 12241762 12241762 A T MICAL2 Silent p.T321T 0.09 TCGA-C8-A132-01 12 104332199 104332199 G C HSP90B1 Missense_Mutation p.E313Q 0.08 deleterious(0.03) benign(0.209) TCGA-C8-A132-01 12 40687422 40687422 T A LRRK2 Nonsense_Mutation p.L922* 0.15 TCGA-C8-A132-01 13 113485824 113485824 A G ATP11A Missense_Mutation p.I453V 0.11 tolerated(0.5) benign(0.004) TCGA-C8-A132-01 13 114535690 114535690 C G GAS6 Missense_Mutation p.K290N 0.35 deleterious(0) possibly_damaging(0.787) TCGA-C8-A132-01 13 95714960 95714960 G C ABCC4 Missense_Mutation p.Q1122E 0.13 deleterious(0) probably_damaging(0.98) TCGA-C8-A132-01 14 23863422 23863422 G A MYH6 Missense_Mutation p.T847M 0.29 tolerated(0.11) possibly_damaging(0.556) TCGA-C8-A132-01 14 33014433 33014433 C T AKAP6 Intron 0.09 TCGA-C8-A132-01 15 68122564 68122564 G A SKOR1 Missense_Mutation p.D718N 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-C8-A132-01 15 70389041 70389041 G C TLE3 Intron 0.08 TCGA-C8-A132-01 16 10788288 10788288 A G TEKT5 Missense_Mutation p.I148T 0.10 deleterious(0.04) possibly_damaging(0.702) TCGA-C8-A132-01 16 23546520 23546520 T C EARS2 Missense_Mutation p.D216G 0.14 deleterious(0) possibly_damaging(0.764) TCGA-C8-A132-01 16 67840286 67840286 G A RANBP10 Missense_Mutation p.P52S 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-C8-A132-01 17 10358324 10358324 G A MYH4 Missense_Mutation p.T790M 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-C8-A132-01 17 1557290 1557290 G A PRPF8 Missense_Mutation p.T2003I 0.10 deleterious(0) possibly_damaging(0.85) TCGA-C8-A132-01 17 39623317 39623317 G A KRT32 Silent p.Y87Y 0.12 TCGA-C8-A132-01 17 48263242 48263242 C T COL1A1 Missense_Mutation p.G1382D 0.16 unknown(0) TCGA-C8-A132-01 17 48264447 48264447 C G COL1A1 Missense_Mutation p.G1154R 0.21 unknown(0) TCGA-C8-A132-01 17 48265501 48265501 C T COL1A1 Missense_Mutation p.G1073S 0.15 unknown(0) TCGA-C8-A132-01 17 48266586 48266586 C T COL1A1 Silent p.V960V 0.14 TCGA-C8-A132-01 17 48267243 48267243 C T COL1A1 Missense_Mutation p.A864T 0.18 unknown(0) TCGA-C8-A132-01 17 49278957 49278957 C G MBTD1 Missense_Mutation p.R407T 0.08 tolerated(0.18) benign(0.015) TCGA-C8-A132-01 17 65914927 65914927 C A BPTF Missense_Mutation p.P1801T 0.36 probably_damaging(0.954) TCGA-C8-A132-01 17 74277976 74277976 C T QRICH2 Missense_Mutation p.R1245Q 0.15 tolerated(0.17) possibly_damaging(0.595) TCGA-C8-A132-01 18 72347051 72347051 C G ZNF407 Missense_Mutation p.S1359C 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-C8-A132-01 19 3009599 3009599 C T TLE2 Missense_Mutation p.V372I 0.10 tolerated(0.13) benign(0.121) TCGA-C8-A132-01 19 40902578 40902578 C G PRX Missense_Mutation p.E561Q 0.20 deleterious(0.05) possibly_damaging(0.607) TCGA-C8-A132-01 19 45924518 45924518 G C ERCC1 Nonsense_Mutation p.S80* 0.09 TCGA-C8-A132-01 19 9083246 9083246 A G MUC16 Missense_Mutation p.S2857P 0.05 unknown(0) TCGA-C8-A132-01 1 108507412 108507412 G T VAV3 Nonsense_Mutation p.S27* 0.18 TCGA-C8-A132-01 1 109780546 109780546 C A SARS 3'UTR 0.16 TCGA-C8-A132-01 1 112270003 112270003 C T FAM212B Missense_Mutation p.V161I 0.24 tolerated(0.71) benign(0.068) TCGA-C8-A132-01 1 115487071 115487071 G C SYCP1 Missense_Mutation p.E680Q 0.11 tolerated(0.38) benign(0.007) TCGA-C8-A132-01 1 151261136 151261136 C A ZNF687 Missense_Mutation p.H750N 0.25 deleterious(0) probably_damaging(0.987) TCGA-C8-A132-01 1 152275234 152275234 C T FLG Missense_Mutation p.S4043N 0.06 unknown(0) TCGA-C8-A132-01 1 152324739 152324739 G A FLG2 Silent p.D1841D 0.24 TCGA-C8-A132-01 1 168262381 168262381 G C TBX19 Splice_Site p.X157_splice 0.12 TCGA-C8-A132-01 1 174219723 174219723 C T RABGAP1L Silent p.F276F 0.08 TCGA-C8-A132-01 1 203151921 203151921 G A CHI3L1 Silent p.S175S 0.19 TCGA-C8-A132-01 1 207697209 207697209 A G CR1 Missense_Mutation p.I247M 0.15 tolerated(0.27) possibly_damaging(0.721) TCGA-C8-A132-01 1 75038620 75038620 G A C1orf173 Missense_Mutation p.A925V 0.11 deleterious(0.03) benign(0.158) TCGA-C8-A132-01 20 20269280 20269280 G T C20orf26 Missense_Mutation p.V942L 0.15 tolerated(0.07) probably_damaging(0.968) TCGA-C8-A132-01 20 61523338 61523338 C G DIDO1 Splice_Site p.X1115_splice 0.10 TCGA-C8-A132-01 22 21055899 21055899 G C TMEM191A RNA 0.11 TCGA-C8-A132-01 22 21982871 21982871 G A YDJC Missense_Mutation p.R270W 0.33 deleterious(0) probably_damaging(1) TCGA-C8-A132-01 22 25119160 25119160 C T PIWIL3 Missense_Mutation p.G774E 0.11 tolerated(0.26) benign(0.014) TCGA-C8-A132-01 2 136736934 136736934 G A DARS Nonsense_Mutation p.R43* 0.04 TCGA-C8-A132-01 2 191840521 191840521 C G STAT1 Intron 0.12 TCGA-C8-A132-01 2 219557396 219557396 C G STK36 Missense_Mutation p.P669R 0.09 deleterious(0) probably_damaging(0.996) TCGA-C8-A132-01 3 137956364 137956364 G A ARMC8 Silent p.K228K 0.07 TCGA-C8-A132-01 3 25502732 25502732 C T RARB Missense_Mutation p.P69L 0.06 deleterious(0.02) benign(0.098) TCGA-C8-A132-01 3 50615304 50615304 C T HEMK1 Missense_Mutation p.S221L 0.09 tolerated(0.44) benign(0.008) TCGA-C8-A132-01 3 99513747 99513747 G A COL8A1 Silent p.G334G 0.18 TCGA-C8-A132-01 4 100530060 100530060 G T MTTP Silent p.G565G 0.12 TCGA-C8-A132-01 4 113199046 113199046 G C TIFA Missense_Mutation p.P176R 0.14 deleterious(0) probably_damaging(0.997) TCGA-C8-A132-01 4 114823652 114823652 G A ARSJ Silent p.F526F 0.12 TCGA-C8-A132-01 4 140058912 140058912 G A ELF2 5'UTR 0.26 TCGA-C8-A132-01 4 15060048 15060048 A G CPEB2 Missense_Mutation p.Y822C 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-C8-A132-01 4 169343797 169343797 T C DDX60L Missense_Mutation p.K708E 0.10 tolerated(0.19) benign(0.299) TCGA-C8-A132-01 4 3190715 3190715 A G HTT Missense_Mutation p.I1755V 0.19 benign(0.029) TCGA-C8-A132-01 5 112420867 112420867 G C MCC Missense_Mutation p.I513M 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-C8-A132-01 5 140041966 140041966 C G IK 3'UTR 0.08 TCGA-C8-A132-01 5 140517348 140517348 G C PCDHB5 Missense_Mutation p.A778P 0.11 tolerated_low_confidence(0.7) benign(0.002) TCGA-C8-A132-01 5 86672382 86672382 G A RASA1 Silent p.E728E 0.25 TCGA-C8-A132-01 5 98129189 98129190 AC - RGMB Frame_Shift_Del p.L392Gfs*9 0.65 TCGA-C8-A132-01 6 132014640 132014640 C G ENPP3 Missense_Mutation p.R430G 0.18 deleterious(0) benign(0.047) TCGA-C8-A132-01 6 3105990 3105990 G C RIPK1 Missense_Mutation p.E427D 0.05 tolerated(0.41) benign(0.002) TCGA-C8-A132-01 6 56338693 56338693 G A DST Silent p.V4701V 0.08 TCGA-C8-A132-01 7 113518116 113518116 T - PPP1R3A Frame_Shift_Del p.M1011* 0.13 TCGA-C8-A132-01 7 30649281 30649281 A G GARS Silent p.L272L 0.26 TCGA-C8-A132-01 7 38807195 38807195 T A VPS41 Missense_Mutation p.I397F 0.07 deleterious(0) possibly_damaging(0.858) TCGA-C8-A132-01 7 5262288 5262288 G A WIPI2 Missense_Mutation p.R242Q 0.19 deleterious(0.02) benign(0.349) TCGA-C8-A132-01 8 22277089 22277089 C G SLC39A14 Missense_Mutation p.Q453E 0.18 tolerated(0.08) benign(0.007) TCGA-C8-A132-01 8 95172379 95172379 C G CDH17 Silent p.L457L 0.24 TCGA-C8-A132-01 9 111659236 111659236 G C IKBKAP Missense_Mutation p.Q862E 0.33 tolerated(0.12) benign(0.403) TCGA-C8-A132-01 9 15171937 15171937 T C TTC39B 3'UTR 0.07 TCGA-C8-A132-01 9 95003139 95003139 T A IARS Missense_Mutation p.Q1094H 0.16 tolerated(0.11) benign(0.002) TCGA-C8-A132-01 X 129149801 129149801 C T BCORL1 Missense_Mutation p.P1018L 0.11 benign(0.007) TCGA-C8-A132-01 X 129271457 129271457 G C AIFM1 Intron 0.07 TCGA-C8-A132-01 X 53457565 53457565 G A RIBC1 Silent p.K295K 0.06 TCGA-C8-A132-01 X 64139103 64139103 C A ZC4H2 Intron 0.14 TCGA-C8-A132-01 X 69645640 69645640 G C GDPD2 Missense_Mutation p.W79C 0.07 deleterious(0) probably_damaging(1) TCGA-C8-A132-01 X 73960461 73960461 G A KIAA2022 Missense_Mutation p.R1311W 0.10 deleterious(0) probably_damaging(1) TCGA-C8-A133-01 10 115973838 115973838 C T TDRD1 Missense_Mutation p.P726L 0.03 deleterious(0) probably_damaging(0.991) TCGA-C8-A133-01 10 8115810 8115829 CCCAAGAACAGCTCGTTTAA - GATA3 Frame_Shift_Del p.K388Gfs*113 0.32 TCGA-C8-A133-01 12 3104024 3104024 T G TEAD4 Missense_Mutation p.L31R 0.53 tolerated(0.53) possibly_damaging(0.77) TCGA-C8-A133-01 12 41316230 41316230 T A CNTN1 Missense_Mutation p.Y134N 0.46 deleterious(0) probably_damaging(0.983) TCGA-C8-A133-01 12 48143529 48143529 C T RAPGEF3 Missense_Mutation p.G297S 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-C8-A133-01 13 53048072 53048072 T G CKAP2 Missense_Mutation p.L553R 0.44 tolerated(0.46) benign(0.001) TCGA-C8-A133-01 16 28603690 28603690 C T SULT1A2 Missense_Mutation p.M223I 0.46 tolerated(1) benign(0) TCGA-C8-A133-01 17 15965146 15965146 G T NCOR1 Missense_Mutation p.A1817D 0.62 probably_damaging(0.998) TCGA-C8-A133-01 17 15965147 15965147 C T NCOR1 Missense_Mutation p.A1817T 0.60 probably_damaging(0.995) TCGA-C8-A133-01 17 17716752 17716752 G T SREBF1 Silent p.A1078A 0.50 TCGA-C8-A133-01 17 4700075 4700075 C T PSMB6 Missense_Mutation p.S52F 0.42 deleterious(0) probably_damaging(0.998) TCGA-C8-A133-01 19 18333013 18333013 C G PDE4C Silent p.L121L 0.41 TCGA-C8-A133-01 19 46294321 46294321 C T DMWD Missense_Mutation p.D156N 0.32 deleterious(0) possibly_damaging(0.811) TCGA-C8-A133-01 20 33568900 33568900 T C MYH7B Intron 0.34 TCGA-C8-A133-01 20 33591392 33591392 G A TRPC4AP Silent p.L693L 0.43 TCGA-C8-A133-01 20 61526172 61526172 G A DIDO1 Missense_Mutation p.S809L 0.04 probably_damaging(0.997) TCGA-C8-A133-01 21 45113350 45113350 G A RRP1B 3'UTR 0.50 TCGA-C8-A133-01 22 30189408 30189408 G A ASCC2 Silent p.Y620Y 0.15 TCGA-C8-A133-01 22 42076347 42076347 T A NHP2L1 Nonsense_Mutation p.K9* 0.07 TCGA-C8-A133-01 2 21224835 21224835 T - APOB Frame_Shift_Del p.I4487* 0.33 TCGA-C8-A133-01 3 129152964 129152964 C T MBD4 Missense_Mutation p.R406Q 0.44 tolerated(0.11) benign(0.243) TCGA-C8-A133-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.41 deleterious(0.02) probably_damaging(0.959) TCGA-C8-A133-01 4 15627295 15627295 G T FBXL5 Missense_Mutation p.P477H 0.48 deleterious_low_confidence(0) possibly_damaging(0.664) TCGA-C8-A133-01 4 17634098 17634098 G A FAM184B 3'UTR 0.47 TCGA-C8-A133-01 4 85676482 85676482 G A WDFY3 Silent p.I1832I 0.09 TCGA-C8-A133-01 6 135511361 135511361 C T MYB Missense_Mutation p.H135Y 0.40 deleterious(0) possibly_damaging(0.659) TCGA-C8-A133-01 6 149826558 149826558 T C PPIL4 3'UTR 0.45 TCGA-C8-A133-01 6 151743699 151743699 C A RMND1 Nonsense_Mutation p.E327* 0.24 TCGA-C8-A133-01 6 7189439 7189439 A G RREB1 Silent p.G103G 0.56 TCGA-C8-A133-01 7 141537798 141537798 C A PRSS37 Missense_Mutation p.D98Y 0.44 deleterious(0.01) probably_damaging(0.964) TCGA-C8-A133-01 8 70541787 70541787 C A SULF1 Missense_Mutation p.N719K 0.36 tolerated(0.85) benign(0.001) TCGA-C8-A133-01 8 90775089 90775089 T A RIPK2 Missense_Mutation p.I69N 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-C8-A133-01 X 110987998 110987998 C A ALG13 Missense_Mutation p.P933H 0.45 deleterious(0.03) possibly_damaging(0.52) TCGA-C8-A133-01 X 148037578 148037578 G T AFF2 Missense_Mutation p.R668I 0.42 deleterious(0) probably_damaging(0.998) TCGA-C8-A133-01 X 54471068 54471068 C T TSR2 3'UTR 0.36 TCGA-C8-A134-01 10 72468454 72468454 C T ADAMTS14 Silent p.L264L 0.39 TCGA-C8-A134-01 10 81067225 81067225 T G ZMIZ1 Missense_Mutation p.M911R 0.35 benign(0.167) TCGA-C8-A134-01 11 114392917 114392917 C G NXPE1 Missense_Mutation p.V331L 0.30 deleterious(0.04) possibly_damaging(0.764) TCGA-C8-A134-01 11 118498583 118498583 G T PHLDB1 Missense_Mutation p.E348D 0.42 tolerated(0.14) possibly_damaging(0.507) TCGA-C8-A134-01 11 124412667 124412667 T A OR8B12 Missense_Mutation p.D295V 0.24 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-C8-A134-01 11 1269276 1269276 C G MUC5B Silent p.L3722L 0.26 TCGA-C8-A134-01 11 19961292 19961292 G T NAV2 Nonsense_Mutation p.G730* 0.30 TCGA-C8-A134-01 11 20417383 20417383 C T PRMT3 Silent p.P145P 0.36 TCGA-C8-A134-01 11 27390302 27390302 G T LGR4 Missense_Mutation p.S656R 0.22 tolerated(0.3) benign(0.063) TCGA-C8-A134-01 11 36614637 36614637 G A RAG2 Missense_Mutation p.T361I 0.30 tolerated(0.09) benign(0.003) TCGA-C8-A134-01 11 43418346 43418346 C G TTC17 Missense_Mutation p.R251G 0.05 deleterious(0) probably_damaging(0.999) TCGA-C8-A134-01 11 47315517 47315517 C A MADD Missense_Mutation p.L1167M 0.39 tolerated(0.14) benign(0.14) TCGA-C8-A134-01 11 47506035 47506035 C G CELF1 Missense_Mutation p.K143N 0.28 deleterious(0) benign(0) TCGA-C8-A134-01 11 5172768 5172768 G T OR52A1 Missense_Mutation p.L278I 0.27 tolerated(0.14) benign(0.361) TCGA-C8-A134-01 11 61503794 61503794 T C DAGLA Missense_Mutation p.V448A 0.26 deleterious(0.02) possibly_damaging(0.574) TCGA-C8-A134-01 11 62459875 62459875 C T BSCL2 Missense_Mutation p.R279H 0.26 tolerated(0.17) probably_damaging(0.924) TCGA-C8-A134-01 11 65143833 65143833 C A SLC25A45 3'UTR 0.33 TCGA-C8-A134-01 11 92531478 92531478 C T FAT3 Missense_Mutation p.P1767S 0.28 probably_damaging(1) TCGA-C8-A134-01 12 107208904 107208904 G T RIC8B Missense_Mutation p.G188V 0.45 deleterious(0) probably_damaging(0.974) TCGA-C8-A134-01 12 110788264 110788264 T G ATP2A2 3'Flank 0.35 TCGA-C8-A134-01 12 113314597 113314597 C G RPH3A Missense_Mutation p.P366R 0.30 deleterious(0.04) possibly_damaging(0.577) TCGA-C8-A134-01 12 129190322 129190322 G A TMEM132C Missense_Mutation p.A937T 0.21 deleterious(0) probably_damaging(0.996) TCGA-C8-A134-01 12 50498425 50498462 CCATGTGGGTATTTGAGGAAGACATTGGAGGCAAAAAG - GPD1 Frame_Shift_Del p.M38Dfs*2 0.30 TCGA-C8-A134-01 12 80613594 80613594 G A OTOGL Missense_Mutation p.G70D 0.54 tolerated(0.08) probably_damaging(0.945) TCGA-C8-A134-01 13 41373296 41373296 G T SLC25A15 Missense_Mutation p.K53N 0.32 tolerated(0.09) possibly_damaging(0.579) TCGA-C8-A134-01 14 71109059 71109059 G T TTC9 Missense_Mutation p.K71N 0.57 deleterious(0.02) probably_damaging(0.968) TCGA-C8-A134-01 14 74125593 74125593 A C DNAL1 Missense_Mutation p.K29T 0.57 tolerated(0.32) possibly_damaging(0.578) TCGA-C8-A134-01 15 54590073 54590073 A GG UNC13C Frame_Shift_Ins p.E1353Rfs*16 0.39 TCGA-C8-A134-01 15 65350882 65350882 C T RASL12 Missense_Mutation p.R103H 0.37 deleterious(0) probably_damaging(0.957) TCGA-C8-A134-01 15 70350527 70350527 G C TLE3 Missense_Mutation p.P341R 0.66 deleterious(0.03) benign(0.066) TCGA-C8-A134-01 16 20043104 20043104 C A GPR139 Missense_Mutation p.V339L 0.31 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-C8-A134-01 16 67645098 67645098 T A CTCF Silent p.P121P 0.11 TCGA-C8-A134-01 16 820069 820069 G T MSLNL Silent p.T972T 0.32 TCGA-C8-A134-01 17 16623911 16623911 G C CCDC144A Missense_Mutation p.L610F 0.18 tolerated(0.08) benign(0.001) TCGA-C8-A134-01 17 18498095 18498095 C G CCDC144B RNA 0.42 TCGA-C8-A134-01 17 56620214 56620214 G A C17orf47 Missense_Mutation p.P445L 0.31 tolerated(0.15) probably_damaging(0.96) TCGA-C8-A134-01 17 73923583 73923583 G A FBF1 Missense_Mutation p.P129L 0.34 tolerated(0.06) benign(0.001) TCGA-C8-A134-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.48 tolerated(0.13) possibly_damaging(0.631) TCGA-C8-A134-01 18 25572679 25572679 A G CDH2 Silent p.T428T 0.21 TCGA-C8-A134-01 18 35145626 35145626 T C CELF4 5'UTR 0.30 TCGA-C8-A134-01 18 72226583 72226583 A C CNDP1 Missense_Mutation p.E60A 0.29 deleterious(0.03) benign(0.303) TCGA-C8-A134-01 19 11917733 11917733 C T ZNF491 Missense_Mutation p.T322I 0.29 deleterious(0.01) probably_damaging(0.944) TCGA-C8-A134-01 19 13035535 13035535 G C FARSA Missense_Mutation p.H371Q 0.26 deleterious(0.02) possibly_damaging(0.838) TCGA-C8-A134-01 19 38376862 38376862 T A WDR87 Missense_Mutation p.E2444D 0.07 unknown(0) TCGA-C8-A134-01 19 40698100 40698100 C G MAP3K10 Silent p.G54G 0.24 TCGA-C8-A134-01 19 41384689 41384689 G A CYP2A7 Silent p.D269D 0.32 TCGA-C8-A134-01 19 44117665 44117665 T A SRRM5 Silent p.S464S 0.27 TCGA-C8-A134-01 19 56538817 56538817 C T NLRP5 Silent p.I406I 0.44 TCGA-C8-A134-01 19 58437810 58437810 T C ZNF418 Missense_Mutation p.E580G 0.30 tolerated(0.38) possibly_damaging(0.858) TCGA-C8-A134-01 1 118582015 118582015 A C SPAG17 Missense_Mutation p.I1073M 0.30 deleterious(0) probably_damaging(0.994) TCGA-C8-A134-01 1 145474686 145474686 C T ANKRD34A Missense_Mutation p.P453L 0.29 deleterious(0.01) benign(0.037) TCGA-C8-A134-01 1 152284334 152284334 C G FLG Missense_Mutation p.A1010P 0.10 probably_damaging(0.952) TCGA-C8-A134-01 1 154525280 154525280 G A UBE2Q1 Missense_Mutation p.S249L 0.35 deleterious(0) probably_damaging(0.974) TCGA-C8-A134-01 1 156236362 156236362 G C SMG5 Missense_Mutation p.P409A 0.30 tolerated(0.12) benign(0.032) TCGA-C8-A134-01 1 167823634 167823634 C G ADCY10 Silent p.T755T 0.36 TCGA-C8-A134-01 1 16946506 16946506 C G RP5-1182A14.5 3'Flank 0.11 TCGA-C8-A134-01 1 186115046 186115046 G T HMCN1 Missense_Mutation p.A4867S 0.23 benign(0.163) TCGA-C8-A134-01 1 201044743 201044743 C T CACNA1S Missense_Mutation p.V610I 0.19 tolerated(1) benign(0.019) TCGA-C8-A134-01 1 203787708 203787708 G A ZC3H11A Missense_Mutation p.C22Y 0.22 deleterious(0) probably_damaging(1) TCGA-C8-A134-01 1 205042352 205042352 G C CNTN2 Missense_Mutation p.V1001L 0.29 tolerated(0.55) benign(0.004) TCGA-C8-A134-01 1 212180058 212180058 C T INTS7 Missense_Mutation p.V268I 0.23 tolerated(0.2) possibly_damaging(0.465) TCGA-C8-A134-01 1 216348807 216348807 G T USH2A Missense_Mutation p.P1472T 0.35 benign(0.022) TCGA-C8-A134-01 1 230846038 230846038 C A AGT Missense_Mutation p.V187L 0.14 deleterious(0.01) benign(0.023) TCGA-C8-A134-01 1 247587896 247587921 AGTACTTCTCTGATGAGGCCCAAGCC - NLRP3 Frame_Shift_Del p.Y385Gfs*92 0.17 TCGA-C8-A134-01 1 2939179 2939179 G T ACTRT2 Missense_Mutation p.G310V 0.29 deleterious(0) probably_damaging(1) TCGA-C8-A134-01 1 44069315 44069315 C T PTPRF Missense_Mutation p.T831M 0.05 tolerated(0.09) possibly_damaging(0.624) TCGA-C8-A134-01 1 44443425 44443426 AG - ATP6V0B Intron 0.25 TCGA-C8-A134-01 20 32880287 32880287 C G AHCY Missense_Mutation p.E108Q 0.47 deleterious_low_confidence(0.02) benign(0.359) TCGA-C8-A134-01 20 56098927 56098927 A T CTCFL Missense_Mutation p.V112E 0.17 tolerated(0.05) benign(0.346) TCGA-C8-A134-01 20 60988927 60988927 C A RBBP8NL Missense_Mutation p.G494C 0.19 deleterious(0.03) benign(0.289) TCGA-C8-A134-01 20 61460842 61460842 G A COL9A3 Silent p.K348K 0.14 TCGA-C8-A134-01 21 15750638 15750638 C T HSPA13 Silent p.K154K 0.32 TCGA-C8-A134-01 21 46308699 46308699 C T ITGB2 Silent p.K663K 0.25 TCGA-C8-A134-01 22 17071877 17071877 C T CCT8L2 Missense_Mutation p.V522M 0.04 tolerated(0.53) benign(0.24) TCGA-C8-A134-01 22 23006950 23006950 G A IGLV3-27 5'Flank 0.11 TCGA-C8-A134-01 2 10584253 10584253 C T ODC1 Silent p.L139L 0.31 TCGA-C8-A134-01 2 111851247 111851247 T C ACOXL Intron 0.45 TCGA-C8-A134-01 2 132110630 132110630 C T AC073869.2 RNA 0.30 TCGA-C8-A134-01 2 190924922 190924922 T G MSTN Missense_Mutation p.S205R 0.33 tolerated(0.07) benign(0.014) TCGA-C8-A134-01 2 242380741 242380741 T A FARP2 Nonsense_Mutation p.L394* 0.38 TCGA-C8-A134-01 2 25062756 25062756 G A ADCY3 Silent p.A447A 0.34 TCGA-C8-A134-01 2 37402347 37402347 A G SULT6B1 Silent p.D146D 0.17 TCGA-C8-A134-01 2 74659725 74659725 T C RTKN Silent p.A60A 0.44 TCGA-C8-A134-01 2 85046570 85046570 G C DNAH6 3'UTR 0.28 TCGA-C8-A134-01 2 98409066 98409066 T G TMEM131 Silent p.P1309P 0.06 TCGA-C8-A134-01 3 111730662 111730662 A C TAGLN3 Silent p.A136A 0.27 TCGA-C8-A134-01 3 122414437 122414437 G C PARP14 Missense_Mutation p.G255R 0.15 deleterious(0) probably_damaging(0.998) TCGA-C8-A134-01 3 12531408 12531408 T C TSEN2 Missense_Mutation p.F37L 0.35 tolerated(0.08) benign(0.067) TCGA-C8-A134-01 3 150387188 150387188 C T FAM194A Missense_Mutation p.G465D 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-C8-A134-01 3 153840375 153840375 C G ARHGEF26 Silent p.P198P 0.33 TCGA-C8-A134-01 3 15613244 15613244 C T HACL1 Silent p.Q342Q 0.38 TCGA-C8-A134-01 3 186518913 186518913 C G RFC4 Missense_Mutation p.G68A 0.36 tolerated(0.21) probably_damaging(0.967) TCGA-C8-A134-01 3 47308681 47308681 T A KIF9 Missense_Mutation p.I222F 0.06 deleterious(0.03) probably_damaging(0.993) TCGA-C8-A134-01 3 81584427 81584427 C G GBE1 Missense_Mutation p.R618T 0.04 deleterious(0) probably_damaging(1) TCGA-C8-A134-01 3 98002196 98002196 A C OR5H2 Missense_Mutation p.L155F 0.28 tolerated(0.1) benign(0.128) TCGA-C8-A134-01 4 156276919 156276919 T C MAP9 Silent p.K413K 0.05 TCGA-C8-A134-01 5 484650 484650 A C SLC9A3 Missense_Mutation p.L306R 0.09 deleterious(0) probably_damaging(0.999) TCGA-C8-A134-01 6 143486276 143486276 A T AIG1 Nonsense_Mutation p.K119* 0.31 TCGA-C8-A134-01 6 147556463 147556463 A G STXBP5 Missense_Mutation p.N109S 0.33 deleterious(0) benign(0.146) TCGA-C8-A134-01 6 62688082 62688082 A G KHDRBS2 Silent p.Y124Y 0.30 TCGA-C8-A134-01 6 82461505 82461505 C A FAM46A Silent p.V118V 0.37 TCGA-C8-A134-01 7 113558810 113558812 TCA CC PPP1R3A Frame_Shift_Del p.F80Lfs*15 0.18 TCGA-C8-A134-01 7 117267576 117267576 A T CFTR Missense_Mutation p.M1157L 0.18 deleterious(0.02) benign(0.379) TCGA-C8-A134-01 7 24747815 24747832 CTGTTGTGGCTCAGGCAG - DFNA5 In_Frame_Del p.L302_Q307del 0.34 TCGA-C8-A134-01 7 73474244 73474244 T A ELN Silent p.P481P 0.17 TCGA-C8-A134-01 7 76019578 76019578 A T SRCRB4D Missense_Mutation p.V509D 0.40 deleterious(0) probably_damaging(1) TCGA-C8-A134-01 8 117862992 117862992 C A RAD21 Missense_Mutation p.E495D 0.20 tolerated(0.4) benign(0) TCGA-C8-A134-01 8 142481219 142481219 C A MROH5 3'UTR 0.34 TCGA-C8-A134-01 8 145735356 145735356 G C MFSD3 Missense_Mutation p.G214R 0.22 deleterious(0) probably_damaging(0.974) TCGA-C8-A134-01 8 87549810 87549810 A T CPNE3 Missense_Mutation p.D160V 0.19 deleterious(0.01) probably_damaging(1) TCGA-C8-A134-01 9 134393925 134393925 G A POMT1 Splice_Site p.X477_splice 0.04 TCGA-C8-A134-01 9 19786554 19786554 G T SLC24A2 Missense_Mutation p.S104Y 0.33 deleterious(0.01) benign(0.057) TCGA-C8-A134-01 9 21206510 21206510 C T IFNA10 3'UTR 0.26 TCGA-C8-A134-01 9 27109613 27109613 C T TEK Missense_Mutation p.L9F 0.30 tolerated(0.19) unknown(0) TCGA-C8-A134-01 X 100608225 100608225 G C BTK Missense_Mutation p.A622G 0.22 deleterious(0) probably_damaging(0.999) TCGA-C8-A134-01 X 100668471 100668471 C G HNRNPH2 3'UTR 0.44 TCGA-C8-A134-01 X 103267771 103267771 G - H2BFWT Frame_Shift_Del p.E155Sfs*36 0.26 TCGA-C8-A134-01 X 106065364 106065364 C A TBC1D8B Missense_Mutation p.P173H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A134-01 X 130419141 130419141 A G IGSF1 Intron 0.31 TCGA-C8-A134-01 X 153716008 153716008 C A SLC10A3 Missense_Mutation p.Q424H 0.23 deleterious(0.02) benign(0.286) TCGA-C8-A134-01 X 35984726 35984726 A T CXorf22 Missense_Mutation p.K485N 0.32 deleterious(0.03) possibly_damaging(0.904) TCGA-C8-A134-01 X 55250460 55250460 C G PAGE5 3'UTR 0.26 TCGA-C8-A134-01 X 65819549 65819549 G C EDA2R Missense_Mutation p.S245W 0.29 tolerated(0.05) benign(0.095) TCGA-C8-A134-01 X 83319326 83319326 G T RPS6KA6 Missense_Mutation p.Q733K 0.30 tolerated(0.46) benign(0.034) TCGA-C8-A135-01 10 125805761 125805761 C T CHST15 5'UTR 0.07 TCGA-C8-A135-01 10 26534920 26534920 G T GAD2 Missense_Mutation p.C304F 0.24 deleterious(0) possibly_damaging(0.732) TCGA-C8-A135-01 10 97386504 97386504 C T ALDH18A1 Missense_Mutation p.A370T 0.11 deleterious(0.04) possibly_damaging(0.617) TCGA-C8-A135-01 11 105481779 105481779 G A GRIA4 Missense_Mutation p.A19T 0.29 tolerated(0.4) benign(0.007) TCGA-C8-A135-01 11 57367822 57367822 C A SERPING1 Silent p.I174I 0.06 TCGA-C8-A135-01 11 64973997 64973997 C T CAPN1 Missense_Mutation p.R473C 0.27 deleterious(0.05) probably_damaging(0.944) TCGA-C8-A135-01 11 65123907 65123907 C T TIGD3 Missense_Mutation p.R210W 0.05 deleterious(0.03) probably_damaging(0.958) TCGA-C8-A135-01 11 66322680 66322680 G T CTD-3074O7.2 3'Flank 0.21 TCGA-C8-A135-01 11 66335472 66335472 C T CTSF Missense_Mutation p.V99M 0.17 tolerated(0.21) benign(0.33) TCGA-C8-A135-01 11 67186344 67186344 C A CARNS1 Missense_Mutation p.T161K 0.23 deleterious(0) probably_damaging(0.983) TCGA-C8-A135-01 11 67765830 67765830 G A UNC93B1 Silent p.C260C 0.05 TCGA-C8-A135-01 12 1920946 1920947 - A CACNA2D4 Intron 0.20 TCGA-C8-A135-01 12 52913583 52913583 G T KRT5 Silent p.T166T 0.11 TCGA-C8-A135-01 12 57114751 57114751 A G NACA Missense_Mutation p.L188P 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-C8-A135-01 12 70732479 70732479 C T CNOT2 Missense_Mutation p.T352M 0.10 tolerated(0.06) possibly_damaging(0.64) TCGA-C8-A135-01 14 105179570 105179570 G A INF2 Silent p.A934A 0.08 TCGA-C8-A135-01 14 24737947 24737947 C T RABGGTA Missense_Mutation p.R295Q 0.18 tolerated(0.32) benign(0.002) TCGA-C8-A135-01 16 28880551 28880551 C T SH2B1 Missense_Mutation p.R386C 0.12 deleterious(0.02) possibly_damaging(0.634) TCGA-C8-A135-01 17 18775905 18775905 T C PRPSAP2 Missense_Mutation p.V61A 0.09 deleterious(0) possibly_damaging(0.895) TCGA-C8-A135-01 17 26938661 26938661 C T SGK494 Silent p.L245L 0.27 TCGA-C8-A135-01 17 37880261 37880261 G C ERBB2 Missense_Mutation p.D769H 0.53 deleterious(0) probably_damaging(1) TCGA-C8-A135-01 17 37885797 37885797 C T MIEN1 Missense_Mutation p.R109H 0.03 tolerated(0.09) benign(0.271) TCGA-C8-A135-01 17 38955739 38955739 T A KRT28 Missense_Mutation p.D136V 0.09 deleterious(0) probably_damaging(0.997) TCGA-C8-A135-01 17 41522193 41522193 C G MIR2117 RNA 0.13 TCGA-C8-A135-01 17 48273322 48273322 C T COL1A1 Missense_Mutation p.A340T 0.09 unknown(0) TCGA-C8-A135-01 17 67283782 67283782 A G ABCA5 Silent p.H671H 0.11 TCGA-C8-A135-01 17 73274371 73274371 C T SLC25A19 Missense_Mutation p.E169K 0.10 deleterious(0) probably_damaging(0.945) TCGA-C8-A135-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.23 TCGA-C8-A135-01 18 12479722 12479722 G A SPIRE1 Silent p.A460A 0.11 TCGA-C8-A135-01 19 10229782 10229782 G A EIF3G Missense_Mutation p.P45S 0.23 tolerated(0.35) benign(0.012) TCGA-C8-A135-01 19 39924246 39924246 G A RPS16 Intron 0.08 TCGA-C8-A135-01 19 58601320 58601320 G C ZSCAN18 Silent p.V161V 0.26 TCGA-C8-A135-01 1 152191856 152191856 G T HRNR Missense_Mutation p.S750Y 0.18 unknown(0) TCGA-C8-A135-01 1 154542778 154542778 C G CHRNB2 Missense_Mutation p.D100E 0.16 tolerated(0.53) benign(0.047) TCGA-C8-A135-01 1 203150381 203150381 T C CHI3L1 Missense_Mutation p.D207G 0.10 deleterious(0) probably_damaging(0.923) TCGA-C8-A135-01 1 236647496 236647496 G A EDARADD 3'Flank 0.08 TCGA-C8-A135-01 1 2430266 2430266 C T PLCH2 Silent p.N784N 0.27 TCGA-C8-A135-01 1 248789815 248789815 G T OR2T11 Silent p.L205L 0.26 TCGA-C8-A135-01 1 63066808 63066808 G C ANGPTL3 Missense_Mutation p.R221T 0.11 tolerated(0.35) benign(0.009) TCGA-C8-A135-01 20 47858649 47858649 C G DDX27 Silent p.L705L 0.10 TCGA-C8-A135-01 20 60419731 60419731 C A CDH4 Missense_Mutation p.S195Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-C8-A135-01 21 30414344 30414345 - A USP16 Frame_Shift_Ins p.S350Ifs*7 0.10 TCGA-C8-A135-01 22 21355660 21355660 C G THAP7 Missense_Mutation p.A41P 0.10 tolerated(0.24) benign(0.008) TCGA-C8-A135-01 22 38120545 38120545 C A TRIOBP Missense_Mutation p.S661Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-C8-A135-01 2 103130612 103130612 A G SLC9A4 Silent p.S541S 0.08 TCGA-C8-A135-01 2 183800041 183800041 C T NCKAP1 Missense_Mutation p.A926T 0.18 tolerated(0.16) benign(0.274) TCGA-C8-A135-01 2 1906950 1906950 G A MYT1L Missense_Mutation p.S643L 0.21 deleterious(0.01) possibly_damaging(0.559) TCGA-C8-A135-01 2 223423433 223423433 G A SGPP2 Missense_Mutation p.R339H 0.15 deleterious(0) probably_damaging(1) TCGA-C8-A135-01 2 240985219 240985219 G A OR6B3 Missense_Mutation p.R91C 0.12 tolerated(0.21) benign(0.002) TCGA-C8-A135-01 2 29448355 29448355 C T ALK Silent p.L1048L 0.08 TCGA-C8-A135-01 2 42472741 42472742 - A EML4 Frame_Shift_Ins p.A43Gfs*5 0.20 TCGA-C8-A135-01 2 64147047 64147047 T C VPS54 Missense_Mutation p.K712E 0.18 tolerated(0.65) benign(0.014) TCGA-C8-A135-01 3 112534586 112534586 A G CD200R1L 3'UTR 0.25 TCGA-C8-A135-01 3 114070679 114070679 G T ZBTB20 Missense_Mutation p.N82K 0.13 deleterious(0) probably_damaging(0.932) TCGA-C8-A135-01 3 123674890 123674890 A T CCDC14 Intron 0.21 TCGA-C8-A135-01 3 160285963 160285963 C T KPNA4 5'Flank 0.22 TCGA-C8-A135-01 3 48694433 48694433 C T CELSR3 Missense_Mutation p.R1366H 0.25 tolerated(0.06) possibly_damaging(0.608) TCGA-C8-A135-01 4 129880840 129880840 T A SCLT1 Missense_Mutation p.E321V 0.21 tolerated(0.1) benign(0.055) TCGA-C8-A135-01 4 13601953 13601953 C G BOD1L1 Missense_Mutation p.E2191Q 0.06 possibly_damaging(0.697) TCGA-C8-A135-01 4 71532226 71532226 G - IGJ 5'UTR 0.09 TCGA-C8-A135-01 5 179043881 179043881 C T HNRNPH1 Missense_Mutation p.G399D 0.24 tolerated(0.06) benign(0.057) TCGA-C8-A135-01 5 67589556 67589556 A G PIK3R1 Missense_Mutation p.D440G 0.21 deleterious(0.02) benign(0.003) TCGA-C8-A135-01 6 152777087 152777087 G A SYNE1 Silent p.N887N 0.10 TCGA-C8-A135-01 6 168397094 168397094 G A KIF25 5'Flank 0.16 TCGA-C8-A135-01 6 33245414 33245414 T G B3GALT4 Missense_Mutation p.L73R 0.11 deleterious(0) probably_damaging(0.999) TCGA-C8-A135-01 6 345877 345877 T A DUSP22 Missense_Mutation p.I71N 0.04 tolerated(0.22) probably_damaging(1) TCGA-C8-A135-01 6 351019 351019 G A DUSP22 3'UTR 0.12 TCGA-C8-A135-01 6 70942386 70942386 G A COL9A1 Silent p.P801P 0.19 TCGA-C8-A135-01 7 103004751 103004751 T C PSMC2 Silent p.G251G 0.32 TCGA-C8-A135-01 7 127223059 127223059 G A GCC1 Missense_Mutation p.A446V 0.06 deleterious(0.05) probably_damaging(0.998) TCGA-C8-A135-01 7 150761705 150761705 C T SLC4A2 Missense_Mutation p.R104W 0.14 deleterious_low_confidence(0) possibly_damaging(0.73) TCGA-C8-A135-01 7 30643153 30643153 G A GARS Missense_Mutation p.E234K 0.22 deleterious(0.03) benign(0.271) TCGA-C8-A135-01 7 66236971 66236974 CCTG - RABGEF1 Frame_Shift_Del p.A30Gfs*71 0.41 TCGA-C8-A135-01 7 6730822 6730822 T C ZNF12 Missense_Mutation p.K584R 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A135-01 8 106815514 106815514 G A ZFPM2 Silent p.Q1068Q 0.21 TCGA-C8-A135-01 8 110342074 110342074 T A NUDCD1 Intron 0.11 TCGA-C8-A135-01 8 110453513 110453513 C A PKHD1L1 Missense_Mutation p.P1370H 0.05 tolerated(0.08) benign(0.056) TCGA-C8-A135-01 8 54708209 54708209 G A ATP6V1H Missense_Mutation p.R290C 0.15 deleterious(0) possibly_damaging(0.79) TCGA-C8-A135-01 8 86049774 86049774 G A LRRCC1 Missense_Mutation p.R802Q 0.08 deleterious(0.01) possibly_damaging(0.82) TCGA-C8-A135-01 9 140137465 140137465 C A TUBB4B Missense_Mutation p.F265L 0.15 deleterious_low_confidence(0.02) benign(0.091) TCGA-C8-A135-01 9 27209143 27209143 G A TEK Missense_Mutation p.R867K 0.19 deleterious(0) probably_damaging(0.924) TCGA-C8-A135-01 9 84608727 84608727 G T SPATA31D1 Missense_Mutation p.E1114D 0.24 tolerated(0.14) benign(0.075) TCGA-C8-A135-01 X 63488918 63488918 T C MTMR8 Silent p.L538L 0.20 TCGA-C8-A137-01 10 135026343 135026343 G A KNDC1 Missense_Mutation p.A1454T 0.34 tolerated(0.33) benign(0.014) TCGA-C8-A137-01 10 15210612 15210612 C G NMT2 5'UTR 0.22 TCGA-C8-A137-01 11 111414717 111414717 G A LAYN Missense_Mutation p.R60Q 0.50 tolerated(0.11) benign(0.058) TCGA-C8-A137-01 11 2321978 2321978 C G C11orf21 Missense_Mutation p.D43H 0.30 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-C8-A137-01 11 32955061 32955061 G T QSER1 Missense_Mutation p.V624F 0.34 deleterious(0.02) benign(0.063) TCGA-C8-A137-01 11 55703121 55703121 G C OR5I1 Missense_Mutation p.I252M 0.50 tolerated(0.09) probably_damaging(0.999) TCGA-C8-A137-01 11 65770705 65770705 G C BANF1 Splice_Site 0.04 TCGA-C8-A137-01 11 77885216 77885216 C T KCTD21 Missense_Mutation p.E129K 0.51 tolerated(0.39) benign(0.267) TCGA-C8-A137-01 12 49724652 49724652 C G TROAP Missense_Mutation p.S675C 0.34 deleterious(0.02) possibly_damaging(0.874) TCGA-C8-A137-01 12 7981305 7981305 G A SLC2A14 Missense_Mutation p.T247M 0.37 deleterious(0.03) benign(0.129) TCGA-C8-A137-01 12 80730728 80730728 A G OTOGL Missense_Mutation p.K1593E 0.39 tolerated(0.52) possibly_damaging(0.795) TCGA-C8-A137-01 13 52333975 52333975 G A WDFY2 3'UTR 0.26 TCGA-C8-A137-01 14 74970002 74970002 C T LTBP2 Missense_Mutation p.R1603H 0.39 tolerated(0.18) benign(0.034) TCGA-C8-A137-01 14 94770757 94770757 A C SERPINA6 Nonstop_Mutation p.*406Eext*44 0.39 TCGA-C8-A137-01 15 34517290 34517290 C G EMC4 5'UTR 0.33 TCGA-C8-A137-01 15 75221511 75221511 G A COX5A Missense_Mutation p.R55C 0.32 deleterious(0.01) probably_damaging(0.946) TCGA-C8-A137-01 15 85164365 85164365 G A ZSCAN2 Silent p.K313K 0.26 TCGA-C8-A137-01 15 89020219 89020219 G A MRPS11 Splice_Site p.X138_splice 0.35 TCGA-C8-A137-01 16 21994417 21994417 G C UQCRC2 Missense_Mutation p.K429N 0.42 tolerated(0.08) benign(0.026) TCGA-C8-A137-01 16 24942551 24942551 G A ARHGAP17 Missense_Mutation p.S690F 0.42 tolerated_low_confidence(0.11) possibly_damaging(0.485) TCGA-C8-A137-01 16 29821526 29821526 C T MAZ 3'UTR 0.42 TCGA-C8-A137-01 16 31341486 31341486 G T ITGAM Splice_Site p.X1021_splice 0.38 TCGA-C8-A137-01 16 5132557 5132557 C G ALG1 Intron 0.37 TCGA-C8-A137-01 17 33278998 33278998 C G CCT6B Missense_Mutation p.E195D 0.55 tolerated(0.15) benign(0.02) TCGA-C8-A137-01 17 40715174 40715174 C T COASY Silent p.S207S 0.71 TCGA-C8-A137-01 17 71429983 71429983 G A SDK2 Silent p.I400I 0.65 TCGA-C8-A137-01 17 79653400 79653400 G T HGS Missense_Mutation p.A61S 0.61 tolerated(0.06) probably_damaging(0.994) TCGA-C8-A137-01 19 17835855 17835855 C G MAP1S Intron 0.37 TCGA-C8-A137-01 19 40711935 40711935 C T MAP3K10 Missense_Mutation p.R436W 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A137-01 19 54691160 54691160 G A MBOAT7 Silent p.H72H 0.46 TCGA-C8-A137-01 1 155018634 155018634 G T DCST1 Nonsense_Mutation p.E436* 0.38 TCGA-C8-A137-01 1 247027329 247027329 A G AHCTF1 Missense_Mutation p.L1155P 0.07 tolerated(0.16) benign(0.148) TCGA-C8-A137-01 1 27700903 27700903 G A FCN3 Missense_Mutation p.P44L 0.09 tolerated(0.08) possibly_damaging(0.836) TCGA-C8-A137-01 1 68512642 68512642 G A DIRAS3 Silent p.V113V 0.42 TCGA-C8-A137-01 1 75078444 75078444 G A C1orf173 Silent p.L350L 0.37 TCGA-C8-A137-01 22 19444107 19444107 C G UFD1L Intron 0.36 TCGA-C8-A137-01 2 136602246 136602246 C T MCM6 Missense_Mutation p.E740K 0.40 tolerated(0.61) benign(0.002) TCGA-C8-A137-01 2 170343618 170343618 C T BBS5 Missense_Mutation p.S61F 0.35 deleterious(0) probably_damaging(0.95) TCGA-C8-A137-01 2 26707384 26707384 G A OTOF Missense_Mutation p.T388M 0.29 deleterious(0.05) possibly_damaging(0.627) TCGA-C8-A137-01 2 45879441 45879441 G A PRKCE Missense_Mutation p.E68K 0.39 tolerated(0.19) benign(0.055) TCGA-C8-A137-01 2 48915909 48915909 A T LHCGR Missense_Mutation p.C343S 0.41 deleterious(0) probably_damaging(1) TCGA-C8-A137-01 2 96076768 96076768 G A FAHD2A Missense_Mutation p.V227I 0.38 tolerated(0.76) benign(0.015) TCGA-C8-A137-01 3 184107221 184107221 G A CHRD 3'UTR 0.36 TCGA-C8-A137-01 4 128751921 128751921 G A HSPA4L Silent p.V765V 0.36 TCGA-C8-A137-01 4 47938422 47938422 G A CNGA1 3'UTR 0.46 TCGA-C8-A137-01 4 54424249 54424249 G C LNX1 Intron 0.40 TCGA-C8-A137-01 5 132200243 132200243 G A GDF9 5'UTR 0.36 TCGA-C8-A137-01 5 140348769 140348769 C A PCDHAC2 Missense_Mutation p.F806L 0.39 tolerated(0.11) benign(0.049) TCGA-C8-A137-01 5 177305674 177305674 G C RP11-423H2.1 RNA 0.44 TCGA-C8-A137-01 5 32173928 32173928 G C GOLPH3 Silent p.L71L 0.37 TCGA-C8-A137-01 6 30557661 30557661 T G ABCF1 Missense_Mutation p.F715V 0.46 deleterious(0.01) possibly_damaging(0.908) TCGA-C8-A137-01 6 30595007 30595007 C T ATAT1 Silent p.F9F 0.36 TCGA-C8-A137-01 6 84234426 84234426 T C PRSS35 3'UTR 0.62 TCGA-C8-A137-01 7 19739894 19739894 T A TWISTNB Missense_Mutation p.N136Y 0.26 deleterious(0) probably_damaging(1) TCGA-C8-A137-01 7 26404752 26404752 G A SNX10 Missense_Mutation p.D100N 0.42 tolerated(0.23) benign(0.046) TCGA-C8-A137-01 7 99219167 99219167 G T ZSCAN25 Nonsense_Mutation p.G187* 0.20 TCGA-C8-A137-01 8 13425043 13425043 G A C8orf48 Missense_Mutation p.M181I 0.32 tolerated(1) benign(0.012) TCGA-C8-A137-01 8 59059479 59059479 C T FAM110B Silent p.I230I 0.62 TCGA-C8-A137-01 9 130575737 130575737 C T FPGS Missense_Mutation p.P540S 0.20 tolerated(0.39) benign(0.004) TCGA-C8-A137-01 9 37020655 37020655 A - PAX5 Frame_Shift_Del p.C64Vfs*19 0.37 TCGA-C8-A137-01 9 37731074 37731074 G A FRMPD1 Missense_Mutation p.V278M 0.54 deleterious(0) possibly_damaging(0.906) TCGA-C8-A137-01 X 38533518 38533518 C A TSPAN7 Missense_Mutation p.T130N 0.36 tolerated(1) benign(0.001) TCGA-C8-A137-01 X 69479266 69479266 G A P2RY4 Missense_Mutation p.T70M 0.34 deleterious(0.03) benign(0.21) TCGA-C8-A138-01 11 4112595 4112595 G A STIM1 Missense_Mutation p.R542H 0.16 tolerated_low_confidence(0.05) benign(0.446) TCGA-C8-A138-01 11 66103898 66103898 A G RIN1 5'UTR 0.33 TCGA-C8-A138-01 11 66103934 66103934 C G RIN1 5'UTR 0.29 TCGA-C8-A138-01 11 66105190 66105190 C T BRMS1 Nonsense_Mutation p.W274* 0.15 TCGA-C8-A138-01 11 66631396 66631396 C T PC Missense_Mutation p.R406H 0.29 deleterious(0) probably_damaging(0.993) TCGA-C8-A138-01 11 70333654 70333654 C A SHANK2 Missense_Mutation p.R916I 0.29 deleterious(0) benign(0.203) TCGA-C8-A138-01 11 71249558 71249558 T A KRTAP5-8 Missense_Mutation p.C153S 0.34 deleterious(0.01) unknown(0) TCGA-C8-A138-01 11 76696702 76696702 G T ACER3 Missense_Mutation p.K112N 0.65 deleterious(0.02) benign(0.261) TCGA-C8-A138-01 12 53849274 53849274 G A PCBP2 Silent p.E41E 0.31 TCGA-C8-A138-01 12 9242995 9242995 G A A2M Silent p.N851N 0.25 TCGA-C8-A138-01 14 64898264 64898264 C A MTHFD1 Silent p.L442L 0.27 TCGA-C8-A138-01 15 83224732 83224732 A C CPEB1 Missense_Mutation p.S249R 0.15 deleterious(0.01) benign(0.093) TCGA-C8-A138-01 16 67695950 67695950 C T PARD6A Silent p.D147D 0.17 TCGA-C8-A138-01 16 9934626 9934626 C G GRIN2A Missense_Mutation p.G510A 0.09 deleterious(0) probably_damaging(1) TCGA-C8-A138-01 17 54431265 54431265 C T ANKFN1 Silent p.L156L 0.30 TCGA-C8-A138-01 17 722712 722712 G T NXN Silent p.R263R 0.56 TCGA-C8-A138-01 17 7576924 7576925 GT - TP53 Frame_Shift_Del p.L308Afs*28 0.38 TCGA-C8-A138-01 18 8376551 8376551 G A PTPRM Missense_Mutation p.V1140I 0.32 tolerated(0.11) benign(0.075) TCGA-C8-A138-01 19 44222997 44222997 C T IRGC Missense_Mutation p.P96L 0.23 deleterious(0.04) benign(0.162) TCGA-C8-A138-01 19 50771580 50771580 C T MYH14 Missense_Mutation p.R997C 0.23 deleterious(0.01) possibly_damaging(0.862) TCGA-C8-A138-01 19 51890496 51890496 G A LIM2 Missense_Mutation p.R68C 0.23 tolerated_low_confidence(0.18) benign(0.091) TCGA-C8-A138-01 1 179604942 179604942 C A TDRD5 Silent p.I480I 0.11 TCGA-C8-A138-01 1 220152916 220152916 C T EPRS Missense_Mutation p.M1251I 0.12 deleterious(0.01) possibly_damaging(0.508) TCGA-C8-A138-01 1 247151327 247151327 C A ZNF695 Missense_Mutation p.G164C 0.10 deleterious(0) probably_damaging(0.912) TCGA-C8-A138-01 20 47865218 47865218 G A ZNFX1 Missense_Mutation p.S1448F 0.20 deleterious(0) possibly_damaging(0.705) TCGA-C8-A138-01 21 45475668 45475668 T - TRAPPC10 Frame_Shift_Del p.M192Cfs*7 0.13 TCGA-C8-A138-01 22 51143180 51143180 G A SHANK3 Missense_Mutation p.E612K 0.21 probably_damaging(0.999) TCGA-C8-A138-01 2 152410473 152410473 T C NEB Missense_Mutation p.M6499V 0.29 benign(0.044) TCGA-C8-A138-01 2 202356525 202356525 T C ALS2CR11 Silent p.Q1513Q 0.33 TCGA-C8-A138-01 2 207174608 207174608 G T ZDBF2 Missense_Mutation p.D1786Y 0.39 tolerated(0.25) possibly_damaging(0.861) TCGA-C8-A138-01 3 194387183 194387183 C T LSG1 Silent p.R115R 0.11 TCGA-C8-A138-01 3 25542765 25542765 C A RARB Nonsense_Mutation p.C133* 0.19 TCGA-C8-A138-01 3 52552806 52552806 G A STAB1 Missense_Mutation p.R1652Q 0.32 tolerated(0.82) benign(0.004) TCGA-C8-A138-01 3 57908744 57908745 - AAT SLMAP In_Frame_Ins p.N781dup 0.11 TCGA-C8-A138-01 4 151793884 151793884 G A LRBA Missense_Mutation p.S730L 0.45 tolerated(0.09) possibly_damaging(0.878) TCGA-C8-A138-01 4 54362438 54362438 G T LNX1 Missense_Mutation p.Q368K 0.48 tolerated(0.84) benign(0.027) TCGA-C8-A138-01 4 5977632 5977632 G A C4orf50 Silent p.P547P 0.30 TCGA-C8-A138-01 5 41004585 41004585 G T MROH2B Missense_Mutation p.L1353M 0.14 tolerated(0.16) possibly_damaging(0.755) TCGA-C8-A138-01 5 41004586 41004586 G T MROH2B Silent p.G1352G 0.14 TCGA-C8-A138-01 6 111696389 111696389 T C REV3L Missense_Mutation p.K1057E 0.29 deleterious(0) possibly_damaging(0.682) TCGA-C8-A138-01 6 160864753 160864753 G T SLC22A3 Nonsense_Mutation p.E497* 0.37 TCGA-C8-A138-01 6 39832810 39832810 G A DAAM2 Missense_Mutation p.V130M 0.26 deleterious(0) probably_damaging(0.998) TCGA-C8-A138-01 6 7211836 7211836 G A RREB1 Missense_Mutation p.E201K 0.34 tolerated(0.16) benign(0.02) TCGA-C8-A138-01 7 117431308 117431308 G T CTTNBP2 Missense_Mutation p.Q648K 0.23 tolerated(0.15) benign(0.097) TCGA-C8-A138-01 7 128444776 128444776 G A CCDC136 Missense_Mutation p.S248N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A138-01 7 150774052 150774052 G C FASTK Missense_Mutation p.S497W 0.16 deleterious(0) probably_damaging(1) TCGA-C8-A138-01 8 30700783 30700783 T C TEX15 Silent p.L1917L 0.47 TCGA-C8-A138-01 9 135073714 135073714 G A NTNG2 Missense_Mutation p.R192H 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-C8-A138-01 9 97522324 97522324 G T C9orf3 Missense_Mutation p.A87S 0.36 tolerated_low_confidence(0.19) benign(0.005) TCGA-C8-A138-01 9 97522325 97522325 C T C9orf3 Missense_Mutation p.A87V 0.35 tolerated_low_confidence(0.49) benign(0.005) TCGA-C8-A138-01 X 133609330 133609330 T G HPRT1 Missense_Mutation p.L85R 0.06 deleterious(0) possibly_damaging(0.9) TCGA-C8-A138-01 X 133609340 133609340 T C HPRT1 Silent p.N88N 0.10 TCGA-C8-A138-01 X 133609366 133609366 T C HPRT1 Missense_Mutation p.V97A 0.11 deleterious(0) possibly_damaging(0.783) TCGA-C8-A138-01 X 13834993 13834993 C G GPM6B Missense_Mutation p.E11Q 0.23 deleterious_low_confidence(0.05) benign(0.185) TCGA-C8-A138-01 X 49192696 49192696 C T GAGE13 Missense_Mutation p.P70L 0.23 tolerated(0.07) benign(0.012) TCGA-C8-A1HE-01 11 16847786 16847786 C G PLEKHA7 Silent p.G408G 0.08 TCGA-C8-A1HE-01 11 47444135 47444135 C T PSMC3 Missense_Mutation p.G292S 0.75 deleterious(0) probably_damaging(0.987) TCGA-C8-A1HE-01 12 21953991 21953991 C T ABCC9 Missense_Mutation p.R1546H 0.23 deleterious(0.01) benign(0.01) TCGA-C8-A1HE-01 13 36367617 36367617 C T DCLK1 Splice_Site p.X649_splice 0.33 TCGA-C8-A1HE-01 13 51855093 51855093 G A FAM124A Missense_Mutation p.E484K 0.37 tolerated(0.3) benign(0.04) TCGA-C8-A1HE-01 14 23745649 23745649 G A HOMEZ Missense_Mutation p.P263L 0.39 tolerated(0.25) benign(0.02) TCGA-C8-A1HE-01 14 95234888 95234888 C T GSC Silent p.S238S 0.26 TCGA-C8-A1HE-01 15 101718167 101718167 A T CHSY1 Missense_Mutation p.L612Q 0.23 tolerated(0.06) benign(0.367) TCGA-C8-A1HE-01 15 42166578 42166578 G A SPTBN5 Missense_Mutation p.S1534F 0.20 benign(0.267) TCGA-C8-A1HE-01 16 3808953 3808953 G A CREBBP Missense_Mutation p.R1091C 0.44 unknown(0) TCGA-C8-A1HE-01 17 46805422 46805422 C T HOXB13 Nonsense_Mutation p.W178* 0.35 TCGA-C8-A1HE-01 17 59668409 59668409 G A NACA2 Nonsense_Mutation p.Q45* 0.41 TCGA-C8-A1HE-01 17 71427712 71427712 G C SDK2 Missense_Mutation p.A470G 0.20 deleterious(0.02) possibly_damaging(0.837) TCGA-C8-A1HE-01 19 12461860 12461860 C T ZNF442 Missense_Mutation p.R180H 0.28 deleterious(0.02) possibly_damaging(0.513) TCGA-C8-A1HE-01 19 37643456 37643456 A C ZNF585A Missense_Mutation p.S394A 0.30 tolerated(0.16) probably_damaging(0.944) TCGA-C8-A1HE-01 19 44679624 44679624 A G ZNF226 Intron 0.21 TCGA-C8-A1HE-01 19 47919906 47919906 C G MEIS3 Intron 0.36 TCGA-C8-A1HE-01 19 50381800 50381800 G A TBC1D17 Missense_Mutation p.D56N 0.45 tolerated(0.07) possibly_damaging(0.559) TCGA-C8-A1HE-01 19 50946815 50946815 G A MYBPC2 Missense_Mutation p.D323N 0.42 deleterious(0) probably_damaging(0.973) TCGA-C8-A1HE-01 19 53885220 53885220 G T ZNF525 Missense_Mutation p.G463V 0.30 deleterious(0) probably_damaging(0.942) TCGA-C8-A1HE-01 19 6222232 6222232 C G MLLT1 Missense_Mutation p.R337T 0.12 tolerated(0.11) benign(0.227) TCGA-C8-A1HE-01 19 7810630 7810630 A G CD209 Silent p.T174T 0.40 TCGA-C8-A1HE-01 1 216108090 216108090 C T USH2A Missense_Mutation p.G2390R 0.23 benign(0.271) TCGA-C8-A1HE-01 20 43739300 43739300 G A WFDC5 Missense_Mutation p.R68C 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-C8-A1HE-01 20 47254270 47254270 G A PREX1 Silent p.L1309L 0.25 TCGA-C8-A1HE-01 21 40670464 40670464 G A BRWD1 Silent p.I81I 0.20 TCGA-C8-A1HE-01 22 42608681 42608681 G A TCF20 Silent p.V877V 0.45 TCGA-C8-A1HE-01 2 220073995 220073995 C T ZFAND2B Silent p.R247R 0.22 TCGA-C8-A1HE-01 2 225362533 225362533 G A CUL3 Silent p.L548L 0.13 TCGA-C8-A1HE-01 2 234749835 234749835 G A HJURP Missense_Mutation p.H531Y 0.41 tolerated(1) benign(0.018) TCGA-C8-A1HE-01 2 32824940 32824940 C T BIRC6 Silent p.F4655F 0.33 TCGA-C8-A1HE-01 2 89102238 89102238 G A ANKRD36BP2 RNA 0.24 TCGA-C8-A1HE-01 3 123675547 123675547 T C CCDC14 Intron 0.50 TCGA-C8-A1HE-01 3 127439973 127439977 TCTCT - MGLL Frame_Shift_Del p.E144Afs*19 0.50 TCGA-C8-A1HE-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.52 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A1HE-01 3 37089169 37089169 G C MLH1 Missense_Mutation p.D631H 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-C8-A1HE-01 4 104062166 104062166 C G CENPE Missense_Mutation p.K1853N 0.07 possibly_damaging(0.889) TCGA-C8-A1HE-01 4 184922544 184922544 T A STOX2 Missense_Mutation p.L78H 0.75 deleterious(0) probably_damaging(0.981) TCGA-C8-A1HE-01 4 39846302 39846302 C T PDS5A Silent p.L1174L 0.27 TCGA-C8-A1HE-01 5 167673880 167673880 C T TENM2 Missense_Mutation p.S1979F 0.42 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HE-01 6 116600543 116600543 C T TSPYL1 Missense_Mutation p.E151K 0.40 tolerated(1) benign(0.001) TCGA-C8-A1HE-01 6 159197489 159197489 G A EZR Missense_Mutation p.S249F 0.39 deleterious(0) probably_damaging(0.992) TCGA-C8-A1HE-01 6 161502011 161502011 C T MAP3K4 Silent p.F732F 0.33 TCGA-C8-A1HE-01 6 52329847 52329847 G C EFHC1 Missense_Mutation p.E357D 0.37 tolerated(0.55) benign(0.002) TCGA-C8-A1HE-01 6 85466569 85466569 C A TBX18 Silent p.S206S 0.48 TCGA-C8-A1HE-01 7 116863013 116863013 A G ST7 Silent p.Q579Q 0.50 TCGA-C8-A1HE-01 7 117407165 117407165 C T CTTNBP2 Silent p.R948R 0.10 TCGA-C8-A1HE-01 7 139756696 139756696 G A PARP12 Silent p.P240P 0.25 TCGA-C8-A1HE-01 7 31864536 31864536 T C PDE1C Missense_Mutation p.S511G 0.11 tolerated(0.2) benign(0.232) TCGA-C8-A1HE-01 7 6777072 6777072 G A PMS2CL RNA 0.14 TCGA-C8-A1HE-01 7 92207495 92207495 C G FAM133B Missense_Mutation p.R93T 0.38 deleterious_low_confidence(0) unknown(0) TCGA-C8-A1HE-01 8 121644761 121644761 C T SNTB1 Missense_Mutation p.E307K 0.41 deleterious(0) benign(0.318) TCGA-C8-A1HE-01 9 36063860 36063860 C T RECK Nonsense_Mutation p.R114* 0.48 TCGA-C8-A1HE-01 9 91977278 91977278 T A SECISBP2 3'Flank 0.31 TCGA-C8-A1HE-01 X 102632641 102632641 G A NGFRAP1 Missense_Mutation p.M74I 0.41 tolerated(0.05) benign(0.003) TCGA-C8-A1HF-01 10 46965768 46965768 C G SYT15 Missense_Mutation p.V257L 0.07 tolerated(0.2) benign(0.001) TCGA-C8-A1HF-01 10 91178167 91178167 T G IFIT5 Nonsense_Mutation p.L404* 0.23 TCGA-C8-A1HF-01 11 123448232 123448232 G A GRAMD1B Missense_Mutation p.V61M 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-C8-A1HF-01 12 56236540 56236540 C A MMP19 Missense_Mutation p.E25D 0.37 deleterious(0.03) benign(0.006) TCGA-C8-A1HF-01 14 53325259 53325259 C G FERMT2 Missense_Mutation p.E634Q 0.22 tolerated(0.64) benign(0.013) TCGA-C8-A1HF-01 17 10247167 10247167 G A MYH13 Missense_Mutation p.S615L 0.49 deleterious(0) probably_damaging(0.996) TCGA-C8-A1HF-01 17 1561627 1561627 T C PRPF8 Missense_Mutation p.I1809V 0.55 tolerated(0.12) benign(0.125) TCGA-C8-A1HF-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.57 deleterious(0) probably_damaging(1) TCGA-C8-A1HF-01 18 12326152 12326152 C G TUBB6 3'UTR 0.35 TCGA-C8-A1HF-01 18 33785149 33785149 C T MOCOS Silent p.S376S 0.35 TCGA-C8-A1HF-01 18 55992246 55992246 G C NEDD4L Missense_Mutation p.D178H 0.35 deleterious(0) possibly_damaging(0.897) TCGA-C8-A1HF-01 19 3620765 3620765 C G CACTIN Missense_Mutation p.E226D 0.20 tolerated(0.18) probably_damaging(0.978) TCGA-C8-A1HF-01 19 3736280 3736280 C T TJP3 Silent p.A424A 0.36 TCGA-C8-A1HF-01 19 49142211 49142211 G A CA11 Silent p.L299L 0.48 TCGA-C8-A1HF-01 19 51890455 51890455 T A LIM2 Silent p.G81G 0.20 TCGA-C8-A1HF-01 19 55284947 55284947 A G KIR2DL1 Missense_Mutation p.D78G 0.05 tolerated(0.73) probably_damaging(0.998) TCGA-C8-A1HF-01 1 33959019 33959019 C T ZSCAN20 Silent p.C559C 0.38 TCGA-C8-A1HF-01 20 35675538 35675538 A C RBL1 Missense_Mutation p.I508S 0.33 deleterious(0) possibly_damaging(0.826) TCGA-C8-A1HF-01 20 44207926 44207926 C T WFDC8 5'UTR 0.34 TCGA-C8-A1HF-01 20 60963388 60963388 C T RPS21 Silent p.L70L 0.38 TCGA-C8-A1HF-01 21 30445874 30445874 T A CCT8 Missense_Mutation p.Q13L 0.48 tolerated(0.2) benign(0.008) TCGA-C8-A1HF-01 21 36206753 36206753 C T RUNX1 Silent p.L253L 0.25 TCGA-C8-A1HF-01 3 137991869 137991869 G - ARMC8 Frame_Shift_Del p.E500Nfs*12 0.19 TCGA-C8-A1HF-01 3 178937445 178937445 T G PIK3CA Silent p.V611V 0.13 TCGA-C8-A1HF-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.45 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A1HF-01 4 147741289 147741289 G A TTC29 Silent p.I363I 0.29 TCGA-C8-A1HF-01 4 148441015 148441015 C T EDNRA Missense_Mutation p.R145C 0.37 deleterious(0.01) possibly_damaging(0.713) TCGA-C8-A1HF-01 5 156659362 156659362 G T ITK Missense_Mutation p.K242N 0.47 tolerated(0.11) probably_damaging(0.985) TCGA-C8-A1HF-01 6 105816780 105816780 C T PREP Missense_Mutation p.E239K 0.36 tolerated(0.25) benign(0.019) TCGA-C8-A1HF-01 6 161016385 161016385 C T LPA Splice_Site p.X1157_splice 0.35 TCGA-C8-A1HF-01 6 26158384 26158384 C T HIST1H2BD 5'UTR 0.32 TCGA-C8-A1HF-01 6 37613706 37613706 C T MDGA1 Intron 0.38 TCGA-C8-A1HF-01 6 90578074 90578074 G A CASP8AP2 RNA 0.36 TCGA-C8-A1HF-01 7 129008388 129008388 G C AHCYL2 Intron 0.53 TCGA-C8-A1HF-01 7 97921796 97921797 CT - BAIAP2L1 3'UTR 0.32 TCGA-C8-A1HF-01 8 6679393 6679393 T A XKR5 Intron 0.27 TCGA-C8-A1HF-01 9 112185130 112185130 G C PTPN3 Missense_Mutation p.S335W 0.03 deleterious(0) possibly_damaging(0.448) TCGA-C8-A1HF-01 9 117071730 117071730 G A COL27A1 Missense_Mutation p.R1803Q 0.33 unknown(0) TCGA-C8-A1HF-01 X 150912895 150912895 G A CNGA2 Missense_Mutation p.M640I 0.13 tolerated(0.12) benign(0) TCGA-C8-A1HF-01 X 153524141 153524141 C T TKTL1 5'UTR 0.23 TCGA-C8-A1HF-01 X 18234761 18234761 T A BEND2 Missense_Mutation p.N40Y 0.19 deleterious_low_confidence(0.03) benign(0.188) TCGA-C8-A1HG-01 10 114190585 114190585 C T ZDHHC6 Missense_Mutation p.E407K 0.25 tolerated(0.11) benign(0.003) TCGA-C8-A1HG-01 11 128354830 128354830 G C ETS1 Silent p.P250P 0.23 TCGA-C8-A1HG-01 11 66612673 66612673 G A RCE1 Missense_Mutation p.R219H 0.03 tolerated(0.19) benign(0.014) TCGA-C8-A1HG-01 11 67250541 67250541 G T AIP 5'UTR 0.15 TCGA-C8-A1HG-01 12 109185905 109185905 G A SSH1 Intron 0.41 TCGA-C8-A1HG-01 12 45269656 45269656 G A NELL2 Silent p.R49R 0.20 TCGA-C8-A1HG-01 12 64055199 64055199 C T DPY19L2 Nonsense_Mutation p.W171* 0.16 TCGA-C8-A1HG-01 12 72667271 72667271 A T TRHDE Missense_Mutation p.N238I 0.26 tolerated(0.18) benign(0.084) TCGA-C8-A1HG-01 13 34540256 34540256 A G RFC3 Missense_Mutation p.I304M 0.06 tolerated(1) benign(0.015) TCGA-C8-A1HG-01 13 47315844 47315844 C T LRCH1 Missense_Mutation p.T718I 0.03 deleterious(0) possibly_damaging(0.53) TCGA-C8-A1HG-01 15 62146723 62146723 G A VPS13C Missense_Mutation p.T3732M 0.17 tolerated(0.3) benign(0.004) TCGA-C8-A1HG-01 15 72968727 72968727 A T HIGD2B Intron 0.21 TCGA-C8-A1HG-01 15 84868558 84868558 G A AC136698.1 3'Flank 0.10 TCGA-C8-A1HG-01 16 4412030 4412030 C T CORO7 Missense_Mutation p.A512T 0.39 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HG-01 16 68265420 68265420 G A ESRP2 Missense_Mutation p.R493W 0.25 deleterious(0.03) possibly_damaging(0.707) TCGA-C8-A1HG-01 17 39503181 39503181 T G KRT33A Missense_Mutation p.Q264P 0.34 deleterious(0) probably_damaging(0.94) TCGA-C8-A1HG-01 17 4996408 4996408 A C ZFP3 3'UTR 0.47 TCGA-C8-A1HG-01 17 51900989 51900989 G C KIF2B Missense_Mutation p.D199H 0.11 deleterious(0.01) possibly_damaging(0.659) TCGA-C8-A1HG-01 17 7578509 7578509 A G TP53 Missense_Mutation p.C141R 0.51 deleterious(0) probably_damaging(1) TCGA-C8-A1HG-01 17 8151340 8151340 C A CTC1 Silent p.R5R 0.31 TCGA-C8-A1HG-01 18 34238119 34238119 C T FHOD3 Silent p.S426S 0.13 TCGA-C8-A1HG-01 19 10226169 10226169 G A EIF3G Silent p.N311N 0.19 TCGA-C8-A1HG-01 19 14580597 14580597 G C PKN1 Missense_Mutation p.Q735H 0.08 deleterious(0) probably_damaging(0.986) TCGA-C8-A1HG-01 19 42355868 42355868 A G DMRTC2 3'UTR 0.08 TCGA-C8-A1HG-01 19 9000463 9000463 C T MUC16 Silent p.T13507T 0.22 TCGA-C8-A1HG-01 1 146400130 146400130 C A NBPF12 Missense_Mutation p.D202E 0.38 possibly_damaging(0.631) TCGA-C8-A1HG-01 1 158326560 158326560 C T CD1E Silent p.V347V 0.14 TCGA-C8-A1HG-01 1 238048592 238048592 T C ZP4 Missense_Mutation p.Y395C 0.30 deleterious(0.01) probably_damaging(1) TCGA-C8-A1HG-01 1 26348966 26348966 C G EXTL1 5'UTR 0.38 TCGA-C8-A1HG-01 20 49367115 49367115 C T PARD6B 3'UTR 0.17 TCGA-C8-A1HG-01 20 50329531 50329532 - G ATP9A Frame_Shift_Ins p.Q137Pfs*18 0.20 TCGA-C8-A1HG-01 21 47539719 47539719 C T COL6A2 Silent p.P429P 0.42 TCGA-C8-A1HG-01 22 20103765 20103765 G A TRMT2A Missense_Mutation p.A132V 0.18 tolerated(0.52) benign(0.013) TCGA-C8-A1HG-01 22 39907907 39907907 G A MIEF1 Silent p.S66S 0.17 TCGA-C8-A1HG-01 22 40802547 40802547 C T SGSM3 Missense_Mutation p.R356W 0.33 deleterious(0.01) benign(0.339) TCGA-C8-A1HG-01 2 119699963 119699963 C T MARCO Silent p.F29F 0.09 TCGA-C8-A1HG-01 2 131099725 131099727 CTT - CCDC115 5'UTR 0.21 TCGA-C8-A1HG-01 2 131984485 131984485 A G POTEE Silent p.A300A 0.08 TCGA-C8-A1HG-01 2 74719773 74719773 C T TTC31 Missense_Mutation p.R388C 0.25 deleterious(0) probably_damaging(0.912) TCGA-C8-A1HG-01 3 151046371 151046371 A G P2RY13 Missense_Mutation p.V158A 0.14 tolerated(0.52) benign(0.004) TCGA-C8-A1HG-01 3 65361584 65361584 C T MAGI1 Missense_Mutation p.R1011Q 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-C8-A1HG-01 4 154479493 154479493 C G KIAA0922 Silent p.V211V 0.15 TCGA-C8-A1HG-01 4 2955267 2955267 C G NOP14 Missense_Mutation p.E240Q 0.17 tolerated(0.15) benign(0.024) TCGA-C8-A1HG-01 4 3445881 3445881 C T HGFAC Silent p.C197C 0.24 TCGA-C8-A1HG-01 4 66197758 66197758 G A EPHA5 Missense_Mutation p.R981W 0.26 deleterious(0) probably_damaging(0.997) TCGA-C8-A1HG-01 4 72433704 72433704 T - SLC4A4 3'UTR 0.24 TCGA-C8-A1HG-01 4 88901223 88901223 T C SPP1 Missense_Mutation p.V40A 0.37 tolerated(0.09) benign(0.418) TCGA-C8-A1HG-01 5 140711248 140711248 G T PCDHGA1 Missense_Mutation p.V333L 0.23 deleterious_low_confidence(0.05) benign(0.327) TCGA-C8-A1HG-01 5 140711270 140711270 T C PCDHGA1 Missense_Mutation p.V340A 0.29 deleterious_low_confidence(0) benign(0.089) TCGA-C8-A1HG-01 5 41033173 41033173 G A MROH2B Silent p.S777S 0.16 TCGA-C8-A1HG-01 6 32085652 32085652 C T ATF6B Missense_Mutation p.D470N 0.27 tolerated(0.18) benign(0.028) TCGA-C8-A1HG-01 6 83863703 83863703 A T DOPEY1 Missense_Mutation p.E2110D 0.49 tolerated(0.12) possibly_damaging(0.562) TCGA-C8-A1HG-01 7 117067562 117067562 C T ASZ1 5'UTR 0.11 TCGA-C8-A1HG-01 7 140244287 140244287 G A DENND2A Intron 0.11 TCGA-C8-A1HG-01 7 151970897 151970897 C T KMT2C Missense_Mutation p.C302Y 0.10 probably_damaging(1) TCGA-C8-A1HG-01 7 30197080 30197080 C T MTURN Silent p.D104D 0.37 TCGA-C8-A1HG-01 7 44530210 44530210 G A NUDCD3 5'UTR 0.15 TCGA-C8-A1HG-01 7 55259482 55259482 C A EGFR Missense_Mutation p.T847K 0.10 deleterious(0) possibly_damaging(0.739) TCGA-C8-A1HG-01 7 84649620 84649620 T A SEMA3D Nonsense_Mutation p.K478* 0.12 TCGA-C8-A1HG-01 8 146202605 146202605 G A ZNF252P RNA 0.04 TCGA-C8-A1HG-01 8 37720512 37720512 C T RAB11FIP1 Silent p.L1251L 0.26 TCGA-C8-A1HG-01 8 413124 413124 C T FBXO25 Missense_Mutation p.R321W 0.30 deleterious(0) probably_damaging(0.944) TCGA-C8-A1HG-01 8 59852038 59852038 G A TOX Silent p.L78L 0.12 TCGA-C8-A1HG-01 9 104193120 104193120 G A ALDOB Missense_Mutation p.S17L 0.15 tolerated(0.46) benign(0.158) TCGA-C8-A1HG-01 9 117840365 117840365 C A TNC Missense_Mutation p.G844V 0.34 deleterious(0.01) probably_damaging(1) TCGA-C8-A1HG-01 9 126429352 126429354 AAG - DENND1A In_Frame_Del p.S153del 0.16 TCGA-C8-A1HG-01 9 130996358 130996358 G A DNM1 Missense_Mutation p.R465Q 0.63 deleterious(0.03) possibly_damaging(0.77) TCGA-C8-A1HG-01 9 75540487 75540487 A C ALDH1A1 Silent p.P182P 0.13 TCGA-C8-A1HG-01 X 111155832 111155832 C T TRPC5 Missense_Mutation p.R196Q 0.29 deleterious(0) probably_damaging(0.988) TCGA-C8-A1HG-01 X 119064069 119064069 C T NKAP Missense_Mutation p.G328E 0.07 deleterious(0.02) unknown(0) TCGA-C8-A1HG-01 X 132887698 132887698 G T GPC3 Silent p.V281V 0.29 TCGA-C8-A1HG-01 X 150869378 150869378 C T PRRG3 Missense_Mutation p.P190L 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-C8-A1HG-01 X 99661925 99661925 G A PCDH19 Silent p.N557N 0.20 TCGA-C8-A1HI-01 10 114910812 114910812 C T TCF7L2 Missense_Mutation p.H311Y 0.21 deleterious(0) benign(0.373) TCGA-C8-A1HI-01 10 68940116 68940116 G A CTNNA3 Missense_Mutation p.R336C 0.29 deleterious(0) possibly_damaging(0.898) TCGA-C8-A1HI-01 10 8115952 8115953 - C GATA3 Frame_Shift_Ins p.H435Pfs*73 0.16 TCGA-C8-A1HI-01 11 101374819 101374819 A C TRPC6 Missense_Mutation p.V294G 0.09 deleterious(0) probably_damaging(0.966) TCGA-C8-A1HI-01 11 59210928 59210928 C T OR5A1 Missense_Mutation p.S96L 0.07 deleterious(0.01) possibly_damaging(0.721) TCGA-C8-A1HI-01 11 60064763 60064763 G A MS4A4A Missense_Mutation p.V99M 0.37 tolerated(0.08) possibly_damaging(0.523) TCGA-C8-A1HI-01 11 67261512 67261512 C A PITPNM1 Silent p.L963L 0.19 TCGA-C8-A1HI-01 11 82896005 82896005 T C PCF11 3'UTR 0.12 TCGA-C8-A1HI-01 12 107371529 107371529 C T MTERFD3 Missense_Mutation p.V322I 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A1HI-01 12 114296632 114296632 G T RBM19 Missense_Mutation p.F876L 0.27 deleterious(0) probably_damaging(1) TCGA-C8-A1HI-01 12 129558234 129558234 G T TMEM132D 3'UTR 0.26 TCGA-C8-A1HI-01 12 53421660 53421660 C T EIF4B Silent p.G254G 0.07 TCGA-C8-A1HI-01 13 67800324 67800324 C T PCDH9 Missense_Mutation p.R750H 0.09 deleterious(0) probably_damaging(0.987) TCGA-C8-A1HI-01 14 23239475 23239475 C G OXA1L Silent p.L279L 0.26 TCGA-C8-A1HI-01 14 23530619 23530619 C T ACIN1 Silent p.E1162E 0.14 TCGA-C8-A1HI-01 14 77935581 77935581 C T AHSA1 Missense_Mutation p.R336C 0.32 deleterious(0.05) benign(0.225) TCGA-C8-A1HI-01 14 89878525 89878525 G A FOXN3 Missense_Mutation p.A99V 0.21 tolerated(0.1) benign(0.271) TCGA-C8-A1HI-01 15 101169644 101169644 G A ASB7 Missense_Mutation p.D72N 0.10 tolerated(0.3) benign(0.322) TCGA-C8-A1HI-01 15 102245918 102245918 C G TARSL2 Missense_Mutation p.E321D 0.09 tolerated(0.19) benign(0.015) TCGA-C8-A1HI-01 15 22332544 22332544 G A RP11-69H14.6 RNA 0.15 TCGA-C8-A1HI-01 15 35044961 35044961 C G GJD2 Missense_Mutation p.L228F 0.05 tolerated(0.7) benign(0.232) TCGA-C8-A1HI-01 15 50540509 50540509 C A HDC Missense_Mutation p.R358L 0.04 deleterious(0) probably_damaging(0.998) TCGA-C8-A1HI-01 15 64689863 64689863 G C TRIP4 Missense_Mutation p.R155T 0.08 tolerated(0.08) benign(0.003) TCGA-C8-A1HI-01 15 64689913 64689913 G A TRIP4 Missense_Mutation p.D172N 0.08 deleterious(0) probably_damaging(0.948) TCGA-C8-A1HI-01 15 79749073 79749073 T C KIAA1024 Missense_Mutation p.L195S 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-C8-A1HI-01 15 89762200 89762200 C G RLBP1 Missense_Mutation p.E3Q 0.04 tolerated_low_confidence(0.25) benign(0.004) TCGA-C8-A1HI-01 15 89762249 89762249 C T RLBP1 5'UTR 0.04 TCGA-C8-A1HI-01 15 89762256 89762256 C T RLBP1 5'UTR 0.04 TCGA-C8-A1HI-01 15 90170342 90170342 G T TICRR 3'UTR 0.11 TCGA-C8-A1HI-01 15 90170369 90170369 G A TICRR 3'UTR 0.09 TCGA-C8-A1HI-01 15 91551102 91551102 G C VPS33B Missense_Mutation p.L166V 0.12 tolerated(0.15) possibly_damaging(0.771) TCGA-C8-A1HI-01 16 28167638 28167638 C T XPO6 Missense_Mutation p.R285Q 0.50 tolerated(0.19) benign(0.007) TCGA-C8-A1HI-01 16 3119287 3119287 C T IL32 Silent p.Y166Y 0.14 TCGA-C8-A1HI-01 16 81529073 81529073 C T CMIP Intron 0.44 TCGA-C8-A1HI-01 17 67264175 67264175 T C ABCA5 Missense_Mutation p.K1018R 0.10 tolerated(0.4) benign(0.008) TCGA-C8-A1HI-01 17 71231655 71231655 C T C17orf80 Missense_Mutation p.P12S 0.06 deleterious(0) probably_damaging(0.991) TCGA-C8-A1HI-01 17 71231736 71231736 C G C17orf80 Missense_Mutation p.Q39E 0.06 deleterious(0.04) benign(0.075) TCGA-C8-A1HI-01 17 72350926 72350926 C T KIF19 Silent p.S904S 0.12 TCGA-C8-A1HI-01 17 72951890 72951890 C G HID1 Missense_Mutation p.D545H 0.18 deleterious(0) probably_damaging(0.996) TCGA-C8-A1HI-01 17 72952020 72952020 C T HID1 Silent p.V501V 0.17 TCGA-C8-A1HI-01 17 7329370 7329370 G C C17orf74 Splice_Site p.X66_splice 0.16 TCGA-C8-A1HI-01 17 73898161 73898161 G C MRPL38 Missense_Mutation p.Q108E 0.27 tolerated(0.5) benign(0.003) TCGA-C8-A1HI-01 17 74774329 74774329 C G MFSD11 Silent p.L415L 0.08 TCGA-C8-A1HI-01 17 76455188 76455188 G A DNAH17 Silent p.Y3238Y 0.08 TCGA-C8-A1HI-01 17 76491080 76491080 G A DNAH17 Silent p.I1987I 0.16 TCGA-C8-A1HI-01 19 14863285 14863285 C T EMR2 Silent p.L548L 0.34 TCGA-C8-A1HI-01 19 14938267 14938267 C A OR7A5 Missense_Mutation p.A263S 0.23 tolerated_low_confidence(0.09) benign(0.1) TCGA-C8-A1HI-01 19 41711922 41711922 C A CYP2S1 Missense_Mutation p.H408Q 0.21 tolerated(0.43) benign(0.003) TCGA-C8-A1HI-01 19 51410279 51410279 C A KLK4 Missense_Mutation p.A226S 0.21 tolerated(0.82) benign(0.014) TCGA-C8-A1HI-01 1 1599837 1599837 G A SLC35E2B Silent p.D303D 0.09 TCGA-C8-A1HI-01 1 221912365 221912365 T C DUSP10 Missense_Mutation p.N241S 0.30 tolerated(0.76) benign(0.001) TCGA-C8-A1HI-01 1 33795722 33795722 G A PHC2 Missense_Mutation p.R699W 0.16 deleterious(0) probably_damaging(0.987) TCGA-C8-A1HI-01 1 54509100 54509100 G C TMEM59 Silent p.T163T 0.16 TCGA-C8-A1HI-01 20 210400 210402 AGA - DEFB129 In_Frame_Del p.E182del 0.40 TCGA-C8-A1HI-01 2 133539971 133539971 T C NCKAP5 Silent p.T1471T 0.26 TCGA-C8-A1HI-01 2 173825508 173825508 C T RAPGEF4 Silent p.H186H 0.15 TCGA-C8-A1HI-01 2 224903347 224903347 G A SERPINE2 5'UTR 0.08 TCGA-C8-A1HI-01 2 69201743 69201743 A G GKN1 5'UTR 0.13 TCGA-C8-A1HI-01 2 99013403 99013403 G T CNGA3 Missense_Mutation p.E590D 0.28 tolerated(0.06) probably_damaging(0.947) TCGA-C8-A1HI-01 3 126268811 126268811 C T C3orf22 Missense_Mutation p.R109H 0.32 deleterious(0) probably_damaging(0.923) TCGA-C8-A1HI-01 3 136699172 136699172 G A IL20RB Intron 0.25 TCGA-C8-A1HI-01 3 196050917 196050917 G A TM4SF19 Intron 0.36 TCGA-C8-A1HI-01 3 4355555 4355555 G A SETMAR Intron 0.09 TCGA-C8-A1HI-01 4 164428259 164428259 A T TMA16 Missense_Mutation p.Q26H 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-C8-A1HI-01 6 38754553 38754553 C T DNAH8 Missense_Mutation p.T586M 0.06 probably_damaging(0.953) TCGA-C8-A1HI-01 6 84644368 84644368 C T CYB5R4 Missense_Mutation p.T290M 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A1HI-01 7 100777176 100777176 T C SERPINE1 Splice_Site p.X300_splice 0.26 TCGA-C8-A1HI-01 7 121741712 121741712 G A AASS Missense_Mutation p.P434L 0.16 deleterious(0) possibly_damaging(0.703) TCGA-C8-A1HI-01 7 77033914 77033914 C T GSAP Missense_Mutation p.V69I 0.04 tolerated(0.39) benign(0.006) TCGA-C8-A1HI-01 7 97823713 97823713 C T LMTK2 Silent p.D1312D 0.31 TCGA-C8-A1HI-01 8 43152258 43152259 AG T POTEA RNA 0.18 TCGA-C8-A1HI-01 9 104238875 104238875 C T TMEM246 Missense_Mutation p.R167H 0.26 deleterious(0.02) benign(0.011) TCGA-C8-A1HI-01 X 129203447 129203447 C A ELF4 Missense_Mutation p.A339S 0.04 tolerated(0.68) benign(0.006) TCGA-C8-A1HI-01 X 151900534 151900534 G A MAGEA12 Silent p.N89N 0.05 TCGA-C8-A1HI-01 X 153215007 153215007 T C HCFC1 Missense_Mutation p.E2022G 0.33 tolerated_low_confidence(0.11) probably_damaging(0.954) TCGA-C8-A1HJ-01 10 102112221 102112221 T A SCD Missense_Mutation p.F137I 0.30 tolerated(0.36) benign(0.327) TCGA-C8-A1HJ-01 10 116595973 116595973 C G FAM160B1 Missense_Mutation p.Q164E 0.13 tolerated(0.08) benign(0.018) TCGA-C8-A1HJ-01 10 50863479 50863479 T G CHAT Silent p.T608T 0.44 TCGA-C8-A1HJ-01 10 71144575 71144575 C T HK1 Silent p.C585C 0.54 TCGA-C8-A1HJ-01 10 7290590 7290590 G C SFMBT2 Missense_Mutation p.H298D 0.51 deleterious(0.03) probably_damaging(0.996) TCGA-C8-A1HJ-01 10 91162494 91162496 AAA - IFIT1 In_Frame_Del p.K155del 0.41 TCGA-C8-A1HJ-01 10 99508101 99508101 G C ZFYVE27 Missense_Mutation p.E177D 0.28 tolerated(0.41) benign(0.015) TCGA-C8-A1HJ-01 11 1086332 1086332 A T MUC2 Missense_Mutation p.E1014V 0.74 possibly_damaging(0.632) TCGA-C8-A1HJ-01 11 1095264 1095264 G A MUC2 Silent p.T2028T 0.64 TCGA-C8-A1HJ-01 11 1459590 1459590 C A BRSK2 Missense_Mutation p.L127M 0.60 deleterious(0.01) probably_damaging(0.995) TCGA-C8-A1HJ-01 11 35229691 35229698 CAAATCCA - CD44 Frame_Shift_Del p.A485Efs*22 0.28 TCGA-C8-A1HJ-01 11 40137802 40137802 A G LRRC4C Missense_Mutation p.I14T 0.49 tolerated_low_confidence(0.08) benign(0.023) TCGA-C8-A1HJ-01 11 55321992 55321992 A G OR4C15 Silent p.S70S 0.31 TCGA-C8-A1HJ-01 11 61977971 61977971 G C SCGB2A1 Missense_Mutation p.E48Q 0.35 tolerated(0.18) benign(0.06) TCGA-C8-A1HJ-01 11 62520833 62520833 C G ZBTB3 Missense_Mutation p.A152P 0.38 deleterious(0) probably_damaging(1) TCGA-C8-A1HJ-01 11 7110465 7110465 C G RBMXL2 Silent p.L38L 0.55 TCGA-C8-A1HJ-01 11 92577795 92577795 G C FAT3 Missense_Mutation p.E3754D 0.72 benign(0.033) TCGA-C8-A1HJ-01 11 96104224 96104224 G C CCDC82 Missense_Mutation p.R388G 0.14 deleterious(0) probably_damaging(0.997) TCGA-C8-A1HJ-01 12 101693781 101693781 C G UTP20 Silent p.L539L 0.57 TCGA-C8-A1HJ-01 12 120634624 120634624 T C RPLP0 Silent p.E302E 0.72 TCGA-C8-A1HJ-01 12 13208585 13208585 G T KIAA1467 Silent p.G46G 0.35 TCGA-C8-A1HJ-01 12 14946765 14946765 A C WBP11 Silent p.T271T 0.70 TCGA-C8-A1HJ-01 12 6103176 6103176 G T VWF Nonsense_Mutation p.C2150* 0.08 TCGA-C8-A1HJ-01 13 113826030 113826030 C T PROZ Nonsense_Mutation p.Q294* 0.39 TCGA-C8-A1HJ-01 13 113965104 113965104 C A LAMP1 Missense_Mutation p.H162N 0.25 tolerated(0.51) benign(0.012) TCGA-C8-A1HJ-01 13 21142086 21142086 C T IFT88 5'UTR 0.45 TCGA-C8-A1HJ-01 13 79213121 79213121 T A RNF219 Missense_Mutation p.D129V 0.32 deleterious(0.03) possibly_damaging(0.859) TCGA-C8-A1HJ-01 14 106237463 106237463 A T IGHG3 Missense_Mutation p.V94E 0.86 deleterious(0) probably_damaging(0.968) TCGA-C8-A1HJ-01 14 107169978 107169978 G T IGHV1-69 Missense_Mutation p.L102M 0.80 tolerated(0.14) possibly_damaging(0.788) TCGA-C8-A1HJ-01 15 35202492 35202492 C T AQR Missense_Mutation p.V503M 0.58 tolerated(0.12) benign(0.129) TCGA-C8-A1HJ-01 15 57816868 57816868 C G CGNL1 Silent p.L986L 0.43 TCGA-C8-A1HJ-01 15 65459107 65459107 G A CLPX Silent p.V125V 0.23 TCGA-C8-A1HJ-01 15 89002977 89002997 GCTTTGAAGAAGAACACCTTG - MRPL46 In_Frame_Del p.K230_A236del 0.20 TCGA-C8-A1HJ-01 16 21728342 21728342 A G OTOA Missense_Mutation p.K535E 0.47 tolerated(0.14) benign(0.106) TCGA-C8-A1HJ-01 16 21813956 21813956 C G RRN3P1 Splice_Site 0.39 TCGA-C8-A1HJ-01 16 26147267 26147267 G C HS3ST4 Missense_Mutation p.G357R 0.47 deleterious(0.01) probably_damaging(1) TCGA-C8-A1HJ-01 16 31282343 31282343 T C ITGAM Missense_Mutation p.F166L 0.27 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HJ-01 16 49671432 49671432 C - ZNF423 Frame_Shift_Del p.G544Afs*5 0.40 TCGA-C8-A1HJ-01 16 58701190 58701190 C G SLC38A7 3'UTR 0.50 TCGA-C8-A1HJ-01 17 26862056 26862056 G C FOXN1 Missense_Mutation p.Q489H 0.54 deleterious(0.01) possibly_damaging(0.806) TCGA-C8-A1HJ-01 17 40318557 40318557 C T KCNH4 Missense_Mutation p.R533H 0.43 tolerated(0.35) benign(0.302) TCGA-C8-A1HJ-01 17 43924168 43924168 C G SPPL2C Silent p.A632A 0.71 TCGA-C8-A1HJ-01 17 48540911 48540914 GAGG - ACSF2 Splice_Site p.X348_splice 0.38 TCGA-C8-A1HJ-01 17 61511891 61511891 A T CYB561 Missense_Mutation p.C210S 0.43 tolerated(0.26) benign(0.004) TCGA-C8-A1HJ-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.58 TCGA-C8-A1HJ-01 17 7951170 7951170 T C ALOX15B Silent p.P596P 0.71 TCGA-C8-A1HJ-01 17 79526293 79526293 T G NPLOC4 Silent p.R607R 0.39 TCGA-C8-A1HJ-01 18 13057640 13057640 G A CEP192 Missense_Mutation p.A1389T 0.62 deleterious(0.04) possibly_damaging(0.668) TCGA-C8-A1HJ-01 19 10659646 10659646 T G ATG4D Missense_Mutation p.V301G 0.32 deleterious(0) possibly_damaging(0.807) TCGA-C8-A1HJ-01 19 14247177 14247177 C G ASF1B Missense_Mutation p.S31T 0.26 deleterious(0.05) benign(0.001) TCGA-C8-A1HJ-01 19 14551135 14551135 G A PKN1 Silent p.E11E 0.26 TCGA-C8-A1HJ-01 19 32874075 32874075 C G ZNF507 3'UTR 0.75 TCGA-C8-A1HJ-01 19 35718977 35718977 C T FAM187B Missense_Mutation p.V203I 0.23 tolerated(0.15) benign(0.11) TCGA-C8-A1HJ-01 19 38189435 38189435 A T ZNF607 Missense_Mutation p.F533I 0.31 deleterious(0) possibly_damaging(0.806) TCGA-C8-A1HJ-01 19 44116613 44116613 C T SRRM5 Missense_Mutation p.R114W 0.34 deleterious(0) probably_damaging(0.952) TCGA-C8-A1HJ-01 19 48715054 48715054 T A CARD8 Missense_Mutation p.K509N 0.34 tolerated(0.13) probably_damaging(0.998) TCGA-C8-A1HJ-01 19 53302112 53302112 C G ZNF28 3'UTR 0.25 TCGA-C8-A1HJ-01 19 55995015 55995015 C T ZNF628 Nonsense_Mutation p.Q819* 0.09 TCGA-C8-A1HJ-01 19 58758105 58758105 C G ZNF544 Missense_Mutation p.I63M 0.48 deleterious(0) benign(0.125) TCGA-C8-A1HJ-01 19 6926467 6926467 A G EMR1 Missense_Mutation p.M693V 0.42 deleterious(0.03) possibly_damaging(0.588) TCGA-C8-A1HJ-01 1 120436760 120436760 C T ADAM30 Missense_Mutation p.E734K 0.31 tolerated(0.51) benign(0.001) TCGA-C8-A1HJ-01 1 152382842 152382842 G T CRNN Missense_Mutation p.T239N 0.19 tolerated(0.06) benign(0.382) TCGA-C8-A1HJ-01 1 156018375 156018375 C G UBQLN4 Missense_Mutation p.E273Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HJ-01 1 156562240 156562240 G C APOA1BP Silent p.L125L 0.14 TCGA-C8-A1HJ-01 1 159284400 159284400 A - OR10J3 Frame_Shift_Del p.F17Sfs*17 0.11 TCGA-C8-A1HJ-01 1 159683842 159683842 C A CRP Missense_Mutation p.A50S 0.22 tolerated(0.35) possibly_damaging(0.873) TCGA-C8-A1HJ-01 1 160328092 160328092 C G NCSTN 3'UTR 0.19 TCGA-C8-A1HJ-01 1 162560143 162560143 A G UAP1 Silent p.E400E 0.23 TCGA-C8-A1HJ-01 1 165324955 165324955 A T LMX1A Intron 0.17 TCGA-C8-A1HJ-01 1 183525283 183525284 TG - NCF2 Frame_Shift_Del p.T517Rfs*31 0.41 TCGA-C8-A1HJ-01 1 204116080 204116080 G C ETNK2 Intron 0.30 TCGA-C8-A1HJ-01 1 204588018 204588026 CCGTGGAGA - LRRN2 In_Frame_Del p.L366_G368del 0.25 TCGA-C8-A1HJ-01 1 216173838 216173838 C G USH2A Missense_Mutation p.S2131T 0.35 probably_damaging(0.991) TCGA-C8-A1HJ-01 1 216850481 216850481 C A ESRRG Missense_Mutation p.G142W 0.44 deleterious(0) probably_damaging(1) TCGA-C8-A1HJ-01 1 228464918 228464918 A C OBSCN Silent p.R2595R 0.32 TCGA-C8-A1HJ-01 1 245766051 245766051 C T KIF26B Missense_Mutation p.A508V 0.73 deleterious(0.01) unknown(0) TCGA-C8-A1HJ-01 1 3397018 3397018 T C ARHGEF16 Missense_Mutation p.L666P 0.38 tolerated(0.06) possibly_damaging(0.776) TCGA-C8-A1HJ-01 1 40030439 40030439 C T PABPC4 Missense_Mutation p.G418R 0.33 tolerated(0.68) benign(0.004) TCGA-C8-A1HJ-01 1 45293808 45293808 C G PTCH2 Missense_Mutation p.V589L 0.31 tolerated(0.78) benign(0.001) TCGA-C8-A1HJ-01 1 53535511 53535511 C A PODN Missense_Mutation p.A43E 0.38 deleterious_low_confidence(0.01) benign(0.017) TCGA-C8-A1HJ-01 1 60294515 60294515 G C HOOK1 Missense_Mutation p.W71C 0.31 deleterious(0.02) probably_damaging(0.985) TCGA-C8-A1HJ-01 20 20278908 20278908 C A C20orf26 Silent p.I1100I 0.38 TCGA-C8-A1HJ-01 20 2644347 2644347 C A IDH3B Missense_Mutation p.V59L 0.71 deleterious(0) possibly_damaging(0.822) TCGA-C8-A1HJ-01 20 3553410 3553410 T C ATRN Missense_Mutation p.L635P 0.60 deleterious(0.02) benign(0.052) TCGA-C8-A1HJ-01 20 47897041 47897041 C A ZNFX1 5'Flank 0.26 TCGA-C8-A1HJ-01 21 36231819 36231819 A G RUNX1 Missense_Mutation p.Y189H 0.11 deleterious(0) probably_damaging(0.978) TCGA-C8-A1HJ-01 22 19119536 19119536 C T TSSK2 Silent p.I208I 0.42 TCGA-C8-A1HJ-01 22 21348559 21348559 G A LZTR1 Splice_Site p.X539_splice 0.46 TCGA-C8-A1HJ-01 22 29833738 29833738 G T RFPL1 5'Flank 0.33 TCGA-C8-A1HJ-01 22 36694976 36694976 G A MYH9 Missense_Mutation p.T1030I 0.35 benign(0.224) TCGA-C8-A1HJ-01 22 50439518 50439540 GGTGATGGAGGCGCGTACACGCA - IL17REL Frame_Shift_Del p.L27Pfs*3 0.23 TCGA-C8-A1HJ-01 22 50957642 50957642 C T NCAPH2 Missense_Mutation p.P252S 0.38 tolerated(0.14) benign(0.06) TCGA-C8-A1HJ-01 2 152273109 152273109 T C RIF1 Silent p.N105N 0.33 TCGA-C8-A1HJ-01 2 166535903 166535903 G C CSRNP3 Silent p.S466S 0.39 TCGA-C8-A1HJ-01 2 166810299 166810299 C A TTC21B 5'UTR 0.29 TCGA-C8-A1HJ-01 2 24475287 24475287 T A ITSN2 Missense_Mutation p.E1016V 0.21 deleterious(0) unknown(0) TCGA-C8-A1HJ-01 2 24475288 24475288 C A ITSN2 Nonsense_Mutation p.E1016* 0.21 TCGA-C8-A1HJ-01 3 137781680 137781680 T A DZIP1L Missense_Mutation p.Q761L 0.30 tolerated(0.25) benign(0.055) TCGA-C8-A1HJ-01 3 142285029 142285029 T G ATR Missense_Mutation p.M76L 0.19 tolerated_low_confidence(0.05) benign(0.041) TCGA-C8-A1HJ-01 3 172607409 172607409 C T SPATA16 Missense_Mutation p.R554Q 0.17 deleterious(0.01) benign(0.417) TCGA-C8-A1HJ-01 3 45159927 45159927 A G CDCP1 Missense_Mutation p.V90A 0.57 deleterious(0.01) possibly_damaging(0.547) TCGA-C8-A1HJ-01 3 52814374 52814374 C G ITIH1 Missense_Mutation p.I221M 0.64 deleterious(0) possibly_damaging(0.643) TCGA-C8-A1HJ-01 4 158233956 158233956 C A GRIA2 Missense_Mutation p.L199M 0.67 tolerated(0.26) probably_damaging(0.983) TCGA-C8-A1HJ-01 5 145895299 145895299 G T GPR151 Missense_Mutation p.S126R 0.46 deleterious(0) probably_damaging(1) TCGA-C8-A1HJ-01 5 156752564 156752564 C G CYFIP2 Missense_Mutation p.R608G 0.58 deleterious(0.01) probably_damaging(0.947) TCGA-C8-A1HJ-01 5 178994482 178994482 G A RUFY1 Missense_Mutation p.R208Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-C8-A1HJ-01 6 110943369 110943369 A C CDK19 Missense_Mutation p.D344E 0.30 tolerated(0.06) benign(0.071) TCGA-C8-A1HJ-01 6 111695002 111695002 G A REV3L Missense_Mutation p.A1519V 0.27 tolerated_low_confidence(0.08) benign(0.003) TCGA-C8-A1HJ-01 6 151939084 151939084 G C CCDC170 Silent p.L650L 0.20 TCGA-C8-A1HJ-01 6 163483345 163483345 C T PACRG Missense_Mutation p.P152L 0.33 deleterious(0) possibly_damaging(0.751) TCGA-C8-A1HJ-01 6 166833389 166833389 A C RPS6KA2 Missense_Mutation p.L609V 0.27 deleterious(0) possibly_damaging(0.464) TCGA-C8-A1HJ-01 6 31110230 31110230 T C CCHCR1 3'UTR 0.17 TCGA-C8-A1HJ-01 6 33409034 33409034 G C SYNGAP1 Missense_Mutation p.E666D 0.20 deleterious(0) possibly_damaging(0.809) TCGA-C8-A1HJ-01 6 36710197 36710197 G C CPNE5 Missense_Mutation p.R544G 0.19 deleterious(0) benign(0.187) TCGA-C8-A1HJ-01 6 36982782 36982782 C T FGD2 Missense_Mutation p.R333C 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-C8-A1HJ-01 6 46135385 46135385 C A ENPP5 Silent p.G205G 0.41 TCGA-C8-A1HJ-01 6 46216493 46216493 G C RCAN2 Missense_Mutation p.F122L 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-C8-A1HJ-01 7 129841839 129841839 A T TMEM209 Missense_Mutation p.Y142N 0.44 deleterious(0.02) probably_damaging(0.952) TCGA-C8-A1HJ-01 7 25264695 25264695 A G NPVF 3'UTR 0.30 TCGA-C8-A1HJ-01 8 110457789 110457789 T G PKHD1L1 Missense_Mutation p.F1897L 0.38 tolerated(0.7) benign(0.002) TCGA-C8-A1HJ-01 8 110509244 110509244 T A PKHD1L1 Missense_Mutation p.L3475H 0.15 tolerated(0.5) benign(0.059) TCGA-C8-A1HJ-01 8 120596251 120596251 C A ENPP2 Missense_Mutation p.C521F 0.20 tolerated(0.07) possibly_damaging(0.882) TCGA-C8-A1HJ-01 8 124195570 124195570 T G FAM83A Silent p.T158T 0.35 TCGA-C8-A1HJ-01 8 130760832 130760832 C A GSDMC Missense_Mutation p.R481M 0.28 deleterious(0) probably_damaging(0.99) TCGA-C8-A1HJ-01 9 131398586 131398586 T C WDR34 Missense_Mutation p.H226R 0.75 deleterious(0) probably_damaging(0.997) TCGA-C8-A1HJ-01 9 17236526 17236526 A G CNTLN Silent p.K263K 0.14 TCGA-C8-A1HJ-01 9 34660530 34660530 G T IL11RA Missense_Mutation p.V368L 0.47 deleterious(0.01) benign(0.134) TCGA-C8-A1HJ-01 9 34660531 34660531 T C IL11RA Missense_Mutation p.V368A 0.46 deleterious(0) benign(0.423) TCGA-C8-A1HJ-01 X 134988615 134988615 T C SAGE1 Missense_Mutation p.V214A 0.28 tolerated(0.88) benign(0.004) TCGA-C8-A1HJ-01 X 152808551 152808551 G A ATP2B3 Missense_Mutation p.V281M 0.08 deleterious(0) probably_damaging(0.929) TCGA-C8-A1HJ-01 X 17818732 17818732 A T RAI2 Missense_Mutation p.S467T 0.29 deleterious(0) unknown(0) TCGA-C8-A1HJ-01 X 48326122 48326122 C A SLC38A5 Missense_Mutation p.G35V 0.51 deleterious(0.04) benign(0.013) TCGA-C8-A1HJ-01 X 71353963 71353963 G A NHSL2 Silent p.S153S 0.07 TCGA-C8-A1HK-01 10 105145226 105145226 G A TAF5 Missense_Mutation p.G603E 0.26 deleterious(0.04) probably_damaging(0.954) TCGA-C8-A1HK-01 10 95347070 95347070 C T FFAR4 Missense_Mutation p.R280C 0.32 deleterious(0) probably_damaging(0.998) TCGA-C8-A1HK-01 11 55371451 55371451 G A OR4C11 Silent p.I133I 0.33 TCGA-C8-A1HK-01 11 58034379 58034379 A T OR10W1 3'UTR 0.28 TCGA-C8-A1HK-01 11 59132707 59132707 T C OR5AN1 Missense_Mutation p.V259A 0.26 deleterious(0.03) probably_damaging(0.98) TCGA-C8-A1HK-01 11 62298678 62298678 C T AHNAK Missense_Mutation p.D1071N 0.36 probably_damaging(0.918) TCGA-C8-A1HK-01 11 67378565 67378565 G C NDUFV1 Missense_Mutation p.R267T 0.06 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-C8-A1HK-01 11 68380660 68380660 G T PPP6R3 3'UTR 0.19 TCGA-C8-A1HK-01 11 70319538 70319538 C T SHANK2 Silent p.P1663P 0.04 TCGA-C8-A1HK-01 12 10978187 10978187 C A TAS2R10 Missense_Mutation p.V228F 0.28 tolerated(0.06) benign(0.049) TCGA-C8-A1HK-01 12 129569363 129569363 C G TMEM132D Intron 0.15 TCGA-C8-A1HK-01 12 49437197 49437197 C G KMT2D Missense_Mutation p.D1828H 0.12 probably_damaging(0.964) TCGA-C8-A1HK-01 12 53233561 53233561 C T KRT78 Missense_Mutation p.G419S 0.12 tolerated(0.18) benign(0.078) TCGA-C8-A1HK-01 12 94976125 94976126 CG - TMCC3 Frame_Shift_Del p.D90Wfs*26 0.38 TCGA-C8-A1HK-01 13 103701791 103701791 C T SLC10A2 Missense_Mutation p.R256Q 0.60 deleterious(0) probably_damaging(0.99) TCGA-C8-A1HK-01 14 101509354 101509354 G C MIR1185-1 RNA 0.31 TCGA-C8-A1HK-01 14 31574620 31574620 C T HECTD1 Silent p.T2456T 0.51 TCGA-C8-A1HK-01 14 64608677 64608677 G T SYNE2 Missense_Mutation p.L5059F 0.49 probably_damaging(0.999) TCGA-C8-A1HK-01 15 102294701 102294701 G A DNM1P47 RNA 0.31 TCGA-C8-A1HK-01 16 2493715 2493715 G C CCNF Missense_Mutation p.E281D 0.20 tolerated(0.16) benign(0.042) TCGA-C8-A1HK-01 16 27974518 27974518 T A GSG1L Missense_Mutation p.K119I 0.15 deleterious(0.04) benign(0.424) TCGA-C8-A1HK-01 16 56388909 56388909 G A RP11-441F2.5 5'Flank 0.20 TCGA-C8-A1HK-01 16 81971437 81971437 A G PLCG2 Missense_Mutation p.M1043V 0.45 deleterious(0.04) benign(0.16) TCGA-C8-A1HK-01 17 38080352 38080352 G A ORMDL3 Silent p.I35I 0.04 TCGA-C8-A1HK-01 17 71193052 71193052 C G COG1 Missense_Mutation p.H192D 0.50 deleterious(0.03) benign(0.142) TCGA-C8-A1HK-01 17 7577100 7577100 T A TP53 Nonsense_Mutation p.R280* 0.83 TCGA-C8-A1HK-01 17 76437229 76437229 C G DNAH17 Missense_Mutation p.E3847Q 0.05 possibly_damaging(0.477) TCGA-C8-A1HK-01 17 76567116 76567116 C G DNAH17 Splice_Site p.X278_splice 0.14 TCGA-C8-A1HK-01 19 36351484 36351484 C T KIRREL2 Silent p.D281D 0.27 TCGA-C8-A1HK-01 19 4513107 4513107 C T PLIN4 Missense_Mutation p.G275S 0.24 tolerated(0.09) possibly_damaging(0.899) TCGA-C8-A1HK-01 19 57325285 57325285 C T PEG3 Missense_Mutation p.E1509K 0.18 tolerated(0.11) probably_damaging(0.989) TCGA-C8-A1HK-01 1 153580612 153580612 T C S100A16 Missense_Mutation p.T6A 0.08 deleterious(0) benign(0.273) TCGA-C8-A1HK-01 1 155733322 155733322 C T GON4L Missense_Mutation p.E1503K 0.12 deleterious(0) possibly_damaging(0.801) TCGA-C8-A1HK-01 1 1635354 1635354 C A CDK11A Missense_Mutation p.W607L 0.41 deleterious(0) unknown(0) TCGA-C8-A1HK-01 1 206649555 206649555 C T IKBKE Silent p.G130G 0.15 TCGA-C8-A1HK-01 1 228451893 228451893 G C OBSCN Silent p.L1738L 0.16 TCGA-C8-A1HK-01 1 33238473 33238473 G C KIAA1522 Missense_Mutation p.Q1090H 0.32 deleterious_low_confidence(0.01) benign(0.153) TCGA-C8-A1HK-01 1 33429830 33429830 C G RNF19B Missense_Mutation p.E153Q 0.21 tolerated(0.08) probably_damaging(0.968) TCGA-C8-A1HK-01 1 85736385 85736385 G C BCL10 Missense_Mutation p.R88G 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A1HK-01 20 2777256 2777256 C T CPXM1 Missense_Mutation p.R321H 0.14 deleterious(0.02) possibly_damaging(0.538) TCGA-C8-A1HK-01 20 49236628 49236628 G T FAM65C Missense_Mutation p.A51E 0.12 tolerated(0.09) possibly_damaging(0.602) TCGA-C8-A1HK-01 22 46795712 46795713 - G CELSR1 Frame_Shift_Ins p.G1772Rfs*14 0.26 TCGA-C8-A1HK-01 2 149247274 149247274 C T MBD5 Missense_Mutation p.A1125V 0.24 deleterious_low_confidence(0) unknown(0) TCGA-C8-A1HK-01 2 179479656 179479656 G A TTN Silent p.A16226A 0.29 TCGA-C8-A1HK-01 2 217279872 217279872 C G SMARCAL1 Missense_Mutation p.Q149E 0.34 tolerated(0.29) benign(0.08) TCGA-C8-A1HK-01 2 217279969 217279969 C G SMARCAL1 Missense_Mutation p.S181C 0.38 tolerated(0.09) benign(0.004) TCGA-C8-A1HK-01 2 37229509 37229509 G A HEATR5B Missense_Mutation p.R1753C 0.14 deleterious(0.01) possibly_damaging(0.886) TCGA-C8-A1HK-01 2 45773940 45773940 C G SRBD1 Missense_Mutation p.R602T 0.35 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HK-01 2 63605609 63605609 G T WDPCP Missense_Mutation p.P554T 0.18 deleterious(0) probably_damaging(1) TCGA-C8-A1HK-01 3 14803016 14803016 G A C3orf20 Missense_Mutation p.V797I 0.25 tolerated(0.31) benign(0.086) TCGA-C8-A1HK-01 3 171417579 171417579 C G PLD1 Missense_Mutation p.E395Q 0.41 tolerated(0.05) possibly_damaging(0.809) TCGA-C8-A1HK-01 3 191861780 191861780 G C FGF12 3'UTR 0.41 TCGA-C8-A1HK-01 3 45132895 45132895 A T CDCP1 Missense_Mutation p.L588Q 0.36 deleterious(0) probably_damaging(1) TCGA-C8-A1HK-01 3 9860595 9860595 G C TTLL3 Missense_Mutation p.E317Q 0.44 tolerated(0.11) benign(0.157) TCGA-C8-A1HK-01 3 9876579 9876579 G A TTLL3 Silent p.L780L 0.30 TCGA-C8-A1HK-01 4 106967728 106967728 C T TBCK Silent p.%3D 0.07 TCGA-C8-A1HK-01 4 40122051 40122051 T C N4BP2 Missense_Mutation p.S774P 0.30 deleterious(0.03) benign(0.055) TCGA-C8-A1HK-01 4 47514627 47514627 G T ATP10D Missense_Mutation p.D24Y 0.12 tolerated(0.21) benign(0.004) TCGA-C8-A1HK-01 4 70146552 70146552 G C UGT2B28 Missense_Mutation p.E112Q 0.20 deleterious(0.03) benign(0.18) TCGA-C8-A1HK-01 4 71508643 71508643 T C ENAM Silent p.D500D 0.35 TCGA-C8-A1HK-01 5 102353039 102353039 A G PAM Missense_Mutation p.H778R 0.17 tolerated(0.34) benign(0.001) TCGA-C8-A1HK-01 6 110944513 110944513 C G CDK19 Missense_Mutation p.D305H 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-C8-A1HK-01 6 151208992 151208992 G T MTHFD1L Missense_Mutation p.D219Y 0.19 deleterious(0.02) benign(0.285) TCGA-C8-A1HK-01 6 160510276 160510278 TTT A IGF2R Frame_Shift_Del p.I2153Kfs*3 0.54 TCGA-C8-A1HK-01 6 42979081 42979081 G A PPP2R5D 3'UTR 0.31 TCGA-C8-A1HK-01 7 100088145 100088145 G C NYAP1 Missense_Mutation p.E651Q 0.16 tolerated(0.38) benign(0.192) TCGA-C8-A1HK-01 7 1529306 1529306 C T INTS1 Silent p.P726P 0.26 TCGA-C8-A1HK-01 7 44612192 44612192 C G DDX56 Missense_Mutation p.E179Q 0.23 deleterious(0) possibly_damaging(0.799) TCGA-C8-A1HK-01 7 73818183 73818183 G C CLIP2 3'UTR 0.23 TCGA-C8-A1HK-01 8 86573404 86573404 C A REXO1L1P 3'UTR 0.09 TCGA-C8-A1HK-01 9 32784679 32784679 C T TMEM215 Silent p.C166C 0.18 TCGA-C8-A1HK-01 9 36583687 36583687 T A MELK Missense_Mutation p.I41N 0.17 deleterious(0) probably_damaging(0.988) TCGA-C8-A1HK-01 X 153881598 153881598 C T CTAG2 Silent p.P64P 0.22 TCGA-C8-A1HK-01 X 18949833 18949833 C A PHKA2 Missense_Mutation p.D391Y 0.14 deleterious(0) probably_damaging(0.967) TCGA-C8-A1HK-01 X 54026388 54026388 C T PHF8 Missense_Mutation p.R419Q 0.16 deleterious(0.01) probably_damaging(0.974) TCGA-C8-A1HK-01 X 54955076 54955076 G A TRO Missense_Mutation p.R640H 0.18 tolerated(0.08) unknown(0) TCGA-C8-A1HL-01 10 102743085 102743085 C T SEMA4G Missense_Mutation p.R577C 0.43 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HL-01 10 103920683 103920683 C T NOLC1 Missense_Mutation p.S525F 0.38 deleterious_low_confidence(0) unknown(0) TCGA-C8-A1HL-01 10 121677426 121677426 T G SEC23IP Missense_Mutation p.F541L 0.07 deleterious(0) possibly_damaging(0.809) TCGA-C8-A1HL-01 10 85973973 85973973 C T CDHR1 Missense_Mutation p.R726C 0.37 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-C8-A1HL-01 11 14496078 14496078 C T COPB1 Missense_Mutation p.R567H 0.03 deleterious(0.01) probably_damaging(0.932) TCGA-C8-A1HL-01 11 624855 624855 C T CDHR5 Silent p.L16L 0.35 TCGA-C8-A1HL-01 11 66236347 66236347 G T PELI3 Nonsense_Mutation p.E66* 0.50 TCGA-C8-A1HL-01 12 132626394 132626394 C G DDX51 Splice_Site p.X332_splice 0.34 TCGA-C8-A1HL-01 13 95696530 95696530 C T ABCC4 Missense_Mutation p.V1207M 0.47 deleterious(0) probably_damaging(0.967) TCGA-C8-A1HL-01 14 65237718 65237718 G A SPTB Missense_Mutation p.R1895C 0.42 tolerated(0.16) probably_damaging(0.991) TCGA-C8-A1HL-01 15 99874160 99874160 G T LRRC28 Missense_Mutation p.D140Y 0.33 deleterious(0.03) probably_damaging(0.975) TCGA-C8-A1HL-01 17 26920013 26920013 G T SPAG5 Missense_Mutation p.F83L 0.15 tolerated_low_confidence(0.18) benign(0.318) TCGA-C8-A1HL-01 17 43545835 43545835 G A PLEKHM1 Silent p.L350L 0.74 TCGA-C8-A1HL-01 18 31326084 31326084 G T ASXL3 Missense_Mutation p.S2091I 0.20 possibly_damaging(0.506) TCGA-C8-A1HL-01 19 10941733 10941733 G A DNM2 3'UTR 0.71 TCGA-C8-A1HL-01 19 54545202 54545202 C G VSTM1 Missense_Mutation p.S174T 0.32 tolerated(0.07) benign(0.083) TCGA-C8-A1HL-01 19 56490781 56490781 C A NLRP8 Silent p.T966T 0.26 TCGA-C8-A1HL-01 1 118693979 118693979 G A SPAG17 Missense_Mutation p.A34V 0.28 tolerated(0.19) possibly_damaging(0.705) TCGA-C8-A1HL-01 1 16458583 16458583 G A EPHA2 Silent p.D767D 0.50 TCGA-C8-A1HL-01 1 209969822 209969822 G T IRF6 Missense_Mutation p.R84S 0.12 deleterious(0) probably_damaging(1) TCGA-C8-A1HL-01 1 240656415 240656415 C T GREM2 Missense_Mutation p.A121T 0.29 tolerated(0.11) possibly_damaging(0.85) TCGA-C8-A1HL-01 1 27087893 27087902 GGCCACCCAG - ARID1A Frame_Shift_Del p.R727Lfs*12 0.74 TCGA-C8-A1HL-01 20 1559046 1559046 C T RP4-576H24.4 Missense_Mutation p.R123Q 0.43 tolerated(1) benign(0.032) TCGA-C8-A1HL-01 20 17462755 17462755 C T PCSK2 3'UTR 0.45 TCGA-C8-A1HL-01 20 29960765 29960765 G T DEFB118 Missense_Mutation p.C55F 0.38 deleterious(0) probably_damaging(0.951) TCGA-C8-A1HL-01 21 33687216 33687216 T C URB1 3'UTR 0.29 TCGA-C8-A1HL-01 2 18766032 18766032 G A NT5C1B Silent p.A217A 0.50 TCGA-C8-A1HL-01 2 84822851 84822851 G A DNAH6 Missense_Mutation p.G936S 0.15 tolerated(0.12) benign(0.158) TCGA-C8-A1HL-01 5 5237179 5237179 T C ADAMTS16 Silent p.D707D 0.19 TCGA-C8-A1HL-01 5 58285743 58285743 G A PDE4D Missense_Mutation p.R431W 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-C8-A1HL-01 5 80521692 80521692 T C RASGRF2 3'UTR 0.44 TCGA-C8-A1HL-01 7 99696921 99696921 C T MCM7 Missense_Mutation p.A128T 0.41 deleterious(0.01) benign(0.004) TCGA-C8-A1HL-01 9 134072801 134072801 C T NUP214 Missense_Mutation p.S1307F 0.20 possibly_damaging(0.831) TCGA-C8-A1HL-01 9 34623970 34623970 C T ARID3C Missense_Mutation p.A156T 0.75 deleterious(0.01) possibly_damaging(0.739) TCGA-C8-A1HL-01 9 73151247 73151247 G T TRPM3 Nonsense_Mutation p.C1582* 0.19 TCGA-C8-A1HL-01 X 100658816 100658816 G A GLA Missense_Mutation p.R118C 0.37 deleterious(0) possibly_damaging(0.681) TCGA-C8-A1HL-01 X 135574243 135574243 C A BRS3 Missense_Mutation p.D303E 0.17 tolerated(0.1) benign(0.014) TCGA-C8-A1HL-01 X 73963021 73963021 C T KIAA2022 Silent p.K457K 0.04 TCGA-C8-A1HM-01 10 100374727 100374727 C G HPSE2 Silent p.V418V 0.15 TCGA-C8-A1HM-01 10 105200072 105200072 G T PDCD11 Nonsense_Mutation p.E1392* 0.19 TCGA-C8-A1HM-01 10 11791544 11791544 G C ECHDC3 Missense_Mutation p.E115Q 0.10 tolerated(0.11) benign(0.015) TCGA-C8-A1HM-01 10 14891732 14891732 C G HSPA14 Missense_Mutation p.S130C 0.29 deleterious(0.01) probably_damaging(0.933) TCGA-C8-A1HM-01 10 21186095 21186095 C T NEBL Missense_Mutation p.E14K 0.28 tolerated_low_confidence(0.12) benign(0.118) TCGA-C8-A1HM-01 10 30602867 30602867 G C MTPAP Missense_Mutation p.L474V 0.32 deleterious(0) possibly_damaging(0.903) TCGA-C8-A1HM-01 10 34408576 34408576 G A PARD3 Silent p.S1214S 0.27 TCGA-C8-A1HM-01 10 3824269 3824269 C G KLF6 Missense_Mutation p.K80N 0.30 tolerated(0.31) probably_damaging(0.977) TCGA-C8-A1HM-01 10 38654451 38654451 C T HSD17B7P2 RNA 0.37 TCGA-C8-A1HM-01 10 61900259 61900259 G A ANK3 Intron 0.07 TCGA-C8-A1HM-01 10 69750681 69750681 G A HERC4 Missense_Mutation p.H475Y 0.09 tolerated(0.2) benign(0.005) TCGA-C8-A1HM-01 10 73461880 73461880 C T CDH23 Silent p.I425I 0.07 TCGA-C8-A1HM-01 10 81374816 81374816 G A SFTPA1 3'Flank 0.10 TCGA-C8-A1HM-01 10 81706230 81706230 C A SFTPD Missense_Mutation p.E62D 0.16 deleterious(0.01) benign(0.046) TCGA-C8-A1HM-01 10 82277787 82277787 C T TSPAN14 3'UTR 0.05 TCGA-C8-A1HM-01 10 84738797 84738797 C G NRG3 Missense_Mutation p.L502V 0.11 deleterious(0.03) benign(0.384) TCGA-C8-A1HM-01 10 97515462 97515462 C G ENTPD1 5'UTR 0.57 TCGA-C8-A1HM-01 10 97983711 97983711 G A BLNK Silent p.F132F 0.12 TCGA-C8-A1HM-01 10 99416641 99416641 G A PI4K2A Missense_Mutation p.E248K 0.19 tolerated(0.07) possibly_damaging(0.627) TCGA-C8-A1HM-01 11 108384923 108384923 C G EXPH5 Missense_Mutation p.M437I 0.61 tolerated(0.08) benign(0.207) TCGA-C8-A1HM-01 11 112086971 112086971 C G BCO2 Nonsense_Mutation p.S515* 0.28 TCGA-C8-A1HM-01 11 118965982 118965982 G A H2AFX Silent p.A41A 0.66 TCGA-C8-A1HM-01 11 12263947 12263947 C T MICAL2 Missense_Mutation p.R842W 0.43 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-C8-A1HM-01 11 122850093 122850093 T A BSX Missense_Mutation p.K112I 0.34 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 11 128350168 128350168 G A ETS1 Silent p.T347T 0.32 TCGA-C8-A1HM-01 11 16810587 16810587 C G PLEKHA7 3'UTR 0.36 TCGA-C8-A1HM-01 11 49831487 49831487 G A RP11-707M1.1 RNA 0.27 TCGA-C8-A1HM-01 11 55340352 55340352 G T OR4C16 Missense_Mutation p.G250V 0.16 tolerated(0.97) benign(0.075) TCGA-C8-A1HM-01 11 56258639 56258639 G A OR5M8 Silent p.L70L 0.58 TCGA-C8-A1HM-01 11 57563948 57563948 C G CTNND1 Missense_Mutation p.T147S 0.19 tolerated(0.09) probably_damaging(0.993) TCGA-C8-A1HM-01 11 57564173 57564173 C G CTNND1 Missense_Mutation p.P222R 0.10 tolerated(0.15) possibly_damaging(0.796) TCGA-C8-A1HM-01 11 5905606 5905606 G A OR52E4 Nonsense_Mutation p.W28* 0.40 TCGA-C8-A1HM-01 11 62009821 62009821 C T SCGB1D2 Silent p.L14L 0.65 TCGA-C8-A1HM-01 11 63990956 63990956 G T FERMT3 Missense_Mutation p.A666S 0.46 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-C8-A1HM-01 11 64067846 64067846 C G KCNK4 3'Flank 0.65 TCGA-C8-A1HM-01 11 64577195 64577195 G C MEN1 Silent p.L129L 0.67 TCGA-C8-A1HM-01 11 65784319 65784319 G A CATSPER1 3'UTR 0.58 TCGA-C8-A1HM-01 11 66468693 66468693 G T SPTBN2 Missense_Mutation p.S959R 0.19 tolerated(0.76) benign(0.193) TCGA-C8-A1HM-01 11 6653424 6653424 C T DCHS1 Missense_Mutation p.E1107K 0.04 deleterious(0.03) possibly_damaging(0.54) TCGA-C8-A1HM-01 11 6942948 6942948 C A OR2D3 Missense_Mutation p.S239Y 0.38 tolerated(0.45) benign(0.033) TCGA-C8-A1HM-01 11 77036380 77036380 C G PAK1 Missense_Mutation p.M531I 0.61 tolerated_low_confidence(0.54) benign(0) TCGA-C8-A1HM-01 11 78380233 78380233 C A TENM4 Missense_Mutation p.G2386V 0.56 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 11 94134208 94134208 G A GPR83 Missense_Mutation p.T69M 0.12 tolerated(0.15) benign(0.097) TCGA-C8-A1HM-01 11 9516249 9516249 G C ZNF143 Missense_Mutation p.E234D 0.29 tolerated(0.31) benign(0.002) TCGA-C8-A1HM-01 12 104461863 104461863 G C HCFC2 Missense_Mutation p.D151H 0.12 deleterious(0) possibly_damaging(0.781) TCGA-C8-A1HM-01 12 110815414 110815414 C T ANAPC7 Missense_Mutation p.E415K 0.14 deleterious(0.04) benign(0.015) TCGA-C8-A1HM-01 12 120575105 120575105 G A GCN1L1 Nonsense_Mutation p.Q2228* 0.28 TCGA-C8-A1HM-01 12 121469412 121469412 G T OASL Missense_Mutation p.L164I 0.18 tolerated(0.3) benign(0.001) TCGA-C8-A1HM-01 12 122186349 122186349 G A TMEM120B Splice_Site p.X102_splice 0.23 TCGA-C8-A1HM-01 12 122723195 122723195 G C VPS33A Missense_Mutation p.S414C 0.12 tolerated(0.4) benign(0.074) TCGA-C8-A1HM-01 12 123089155 123089155 G T KNTC1 Nonsense_Mutation p.E1716* 0.15 TCGA-C8-A1HM-01 12 123950359 123950359 C G SNRNP35 Nonsense_Mutation p.S96* 0.14 TCGA-C8-A1HM-01 12 123950612 123950612 C G SNRNP35 Silent p.L180L 0.15 TCGA-C8-A1HM-01 12 14947468 14947468 C T WBP11 Intron 0.34 TCGA-C8-A1HM-01 12 15262034 15262034 G A RERG 3'UTR 0.13 TCGA-C8-A1HM-01 12 15262035 15262035 C T RERG 3'UTR 0.12 TCGA-C8-A1HM-01 12 21353576 21353576 C T SLCO1B1 Nonsense_Mutation p.Q369* 0.29 TCGA-C8-A1HM-01 12 27826750 27826750 C T PPFIBP1 Missense_Mutation p.T474I 0.35 tolerated(0.23) benign(0.056) TCGA-C8-A1HM-01 12 30893970 30893970 G A CAPRIN2 Missense_Mutation p.S185F 0.10 tolerated(0.12) probably_damaging(0.969) TCGA-C8-A1HM-01 12 46320776 46320776 G A SCAF11 Missense_Mutation p.P903L 0.18 deleterious(0) possibly_damaging(0.735) TCGA-C8-A1HM-01 12 4796219 4796219 G A NDUFA9 Missense_Mutation p.R360H 0.22 tolerated(0.27) possibly_damaging(0.901) TCGA-C8-A1HM-01 12 48387775 48387775 A T COL2A1 Splice_Site p.X290_splice 0.14 TCGA-C8-A1HM-01 12 48539584 48539584 C G PFKM 3'UTR 0.10 TCGA-C8-A1HM-01 12 49426957 49426957 C A KMT2D Missense_Mutation p.G3844V 0.13 possibly_damaging(0.591) TCGA-C8-A1HM-01 12 51398646 51398646 G T SLC11A2 Silent p.L147L 0.24 TCGA-C8-A1HM-01 12 52761090 52761090 T C KRT85 Missense_Mutation p.I34V 0.07 tolerated(0.73) possibly_damaging(0.891) TCGA-C8-A1HM-01 12 54674552 54674552 C T HNRNPA1 5'UTR 0.52 TCGA-C8-A1HM-01 12 56558181 56558181 A T SMARCC2 Silent p.P1158P 0.14 TCGA-C8-A1HM-01 12 56561849 56561849 C T SMARCC2 Missense_Mutation p.E918K 0.13 deleterious(0) benign(0.292) TCGA-C8-A1HM-01 12 57559971 57559971 G C LRP1 Missense_Mutation p.E926Q 0.05 probably_damaging(0.999) TCGA-C8-A1HM-01 12 57592378 57592378 G T LRP1 Nonsense_Mutation p.E3201* 0.13 TCGA-C8-A1HM-01 12 57606309 57606309 G A LRP1 Missense_Mutation p.E4536K 0.11 benign(0.171) TCGA-C8-A1HM-01 12 66742819 66742819 C T GRIP1 Missense_Mutation p.E1071K 0.27 deleterious_low_confidence(0.03) benign(0.108) TCGA-C8-A1HM-01 12 6680157 6680157 C T CHD4 Missense_Mutation p.D1867N 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-C8-A1HM-01 12 69080776 69080776 G C NUP107 5'UTR 0.27 TCGA-C8-A1HM-01 12 69103830 69103830 G A NUP107 Missense_Mutation p.E283K 0.10 tolerated(0.06) benign(0.079) TCGA-C8-A1HM-01 12 7064127 7064127 C T PTPN6 Silent p.L162L 0.39 TCGA-C8-A1HM-01 12 7550886 7550886 C G CD163L1 Missense_Mutation p.R568T 0.11 tolerated(0.12) possibly_damaging(0.561) TCGA-C8-A1HM-01 13 111290626 111290626 G A CARKD Missense_Mutation p.E311K 0.20 tolerated_low_confidence(0.96) benign(0) TCGA-C8-A1HM-01 13 113719306 113719306 C T MCF2L Silent p.F221F 0.49 TCGA-C8-A1HM-01 13 113772894 113772894 G A F7 Missense_Mutation p.E325K 0.41 tolerated(0.05) probably_damaging(0.982) TCGA-C8-A1HM-01 13 24460622 24460622 C G MIPEP Silent p.L71L 0.07 TCGA-C8-A1HM-01 13 26535727 26535727 G C ATP8A2 Silent p.L1066L 0.18 TCGA-C8-A1HM-01 13 42882612 42882612 C T AKAP11 Nonsense_Mutation p.Q1714* 0.14 TCGA-C8-A1HM-01 13 79233294 79233294 G A RNF219 5'UTR 0.15 TCGA-C8-A1HM-01 13 98865603 98865603 C G FARP1 Nonsense_Mutation p.S36* 0.16 TCGA-C8-A1HM-01 14 102549629 102549629 C G HSP90AA1 Missense_Mutation p.K621N 0.60 deleterious_low_confidence(0.02) unknown(0) TCGA-C8-A1HM-01 14 20404299 20404299 C T OR4K1 Silent p.S158S 0.28 TCGA-C8-A1HM-01 14 20856087 20856087 G C TEP1 Silent p.P887P 0.50 TCGA-C8-A1HM-01 14 21464955 21464955 G A METTL17 Silent p.S450S 0.25 TCGA-C8-A1HM-01 14 21867782 21867782 G C CHD8 Missense_Mutation p.L1634V 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-C8-A1HM-01 14 35077312 35077312 G A SNX6 Missense_Mutation p.S77L 0.34 tolerated(0.1) probably_damaging(0.998) TCGA-C8-A1HM-01 14 70497144 70497144 C T SMOC1 3'UTR 0.19 TCGA-C8-A1HM-01 14 73989808 73989808 G C HEATR4 Missense_Mutation p.Q17E 0.27 tolerated_low_confidence(0.32) benign(0.003) TCGA-C8-A1HM-01 14 74428017 74428017 C A COQ6 Missense_Mutation p.L345M 0.21 tolerated(0.41) benign(0.007) TCGA-C8-A1HM-01 14 94744955 94744955 G C PPP4R4 Splice_Site p.X866_splice 0.60 TCGA-C8-A1HM-01 15 30053811 30053811 C G TJP1 Missense_Mutation p.E285D 0.33 tolerated(0.73) benign(0.004) TCGA-C8-A1HM-01 15 38614513 38614513 G C SPRED1 Missense_Mutation p.K93N 0.49 deleterious(0.02) possibly_damaging(0.546) TCGA-C8-A1HM-01 15 49509389 49509389 G A GALK2 Missense_Mutation p.E49K 0.23 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 15 52497930 52497930 C G MYO5C Intron 0.39 TCGA-C8-A1HM-01 15 52515785 52515785 C T MYO5C Missense_Mutation p.E1195K 0.11 tolerated(0.28) benign(0.184) TCGA-C8-A1HM-01 15 54919234 54919234 C T UNC13C Nonsense_Mutation p.Q2190* 0.16 TCGA-C8-A1HM-01 15 59515261 59515261 C G MYO1E Missense_Mutation p.E303Q 0.11 tolerated(0.21) possibly_damaging(0.588) TCGA-C8-A1HM-01 15 62170937 62170937 C G VPS13C Missense_Mutation p.L3337F 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A1HM-01 15 62204183 62204183 C T VPS13C Missense_Mutation p.M2857I 0.29 tolerated(0.08) possibly_damaging(0.612) TCGA-C8-A1HM-01 15 75641571 75641571 C T NEIL1 Missense_Mutation p.R109W 0.60 deleterious(0.01) possibly_damaging(0.687) TCGA-C8-A1HM-01 15 83518649 83518649 C T HOMER2 Missense_Mutation p.E295K 0.21 deleterious(0) probably_damaging(0.993) TCGA-C8-A1HM-01 15 85431031 85431031 C G SLC28A1 Missense_Mutation p.L14V 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-C8-A1HM-01 15 89424920 89424920 G A HAPLN3 Missense_Mutation p.P54L 0.28 tolerated(0.14) benign(0.098) TCGA-C8-A1HM-01 16 11009480 11009480 C T CIITA Missense_Mutation p.T981M 0.12 tolerated(0.1) benign(0.011) TCGA-C8-A1HM-01 16 14334208 14334208 G A MKL2 Missense_Mutation p.E316K 0.32 deleterious(0) probably_damaging(0.993) TCGA-C8-A1HM-01 16 1451633 1451633 C G UNKL Missense_Mutation p.Q178H 0.08 deleterious(0) benign(0.076) TCGA-C8-A1HM-01 16 1618215 1618215 C A IFT140 Intron 0.14 TCGA-C8-A1HM-01 16 19191817 19191817 C T SYT17 Missense_Mutation p.S96L 0.37 deleterious(0) benign(0.115) TCGA-C8-A1HM-01 16 2014292 2014292 G T RPS2 Missense_Mutation p.F84L 0.30 deleterious(0.01) benign(0.178) TCGA-C8-A1HM-01 16 20636769 20636769 G C ACSM1 Silent p.G501G 0.12 TCGA-C8-A1HM-01 16 2115622 2115622 C G TSC2 Missense_Mutation p.L568V 0.09 tolerated(0.17) possibly_damaging(0.531) TCGA-C8-A1HM-01 16 21215354 21215354 C G ZP2 Silent p.T323T 0.10 TCGA-C8-A1HM-01 16 29896997 29896997 G A SEZ6L2 Missense_Mutation p.R428W 0.07 deleterious(0) probably_damaging(0.917) TCGA-C8-A1HM-01 16 3081079 3081079 C T CCDC64B Missense_Mutation p.V119M 0.45 deleterious(0.05) benign(0.161) TCGA-C8-A1HM-01 16 31341151 31341151 C G ITGAM Missense_Mutation p.I968M 0.10 deleterious(0.04) probably_damaging(0.959) TCGA-C8-A1HM-01 16 3340575 3340575 C G ZNF263 3'UTR 0.09 TCGA-C8-A1HM-01 16 57075485 57075485 G A NLRC5 Missense_Mutation p.D1010N 0.42 deleterious(0.03) benign(0.177) TCGA-C8-A1HM-01 16 67577132 67577132 G C FAM65A Missense_Mutation p.E835Q 0.19 deleterious(0.01) benign(0.403) TCGA-C8-A1HM-01 16 67578233 67578233 G A FAM65A Missense_Mutation p.D898N 0.19 tolerated(0.11) benign(0.011) TCGA-C8-A1HM-01 16 69191112 69191112 C G CIRH1A Missense_Mutation p.F471L 0.19 tolerated(0.74) benign(0.001) TCGA-C8-A1HM-01 16 71766954 71766954 C A AP1G1 3'UTR 0.58 TCGA-C8-A1HM-01 16 72138012 72138012 C G DHX38 Silent p.L664L 0.08 TCGA-C8-A1HM-01 16 72188209 72188209 C G PMFBP1 Missense_Mutation p.Q105H 0.31 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 16 732356 732356 C A STUB1 Intron 0.15 TCGA-C8-A1HM-01 16 77375627 77375627 C T ADAMTS18 Missense_Mutation p.E562K 0.30 deleterious(0) probably_damaging(0.928) TCGA-C8-A1HM-01 16 787197 787197 C G NARFL Missense_Mutation p.D99H 0.32 tolerated(0.12) benign(0.005) TCGA-C8-A1HM-01 16 839677 839677 C T CHTF18 Silent p.L190L 0.24 TCGA-C8-A1HM-01 17 10435109 10435109 C T MYH2 Silent p.L846L 0.17 TCGA-C8-A1HM-01 17 10608733 10608733 G C ADPRM Missense_Mutation p.D164H 0.43 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 17 11543625 11543625 G A DNAH9 Missense_Mutation p.G609S 0.53 probably_damaging(0.975) TCGA-C8-A1HM-01 17 11999007 11999007 G A MAP2K4 Missense_Mutation p.R170K 0.05 tolerated(0.33) benign(0.007) TCGA-C8-A1HM-01 17 12897061 12897061 G A ELAC2 Silent p.V732V 0.49 TCGA-C8-A1HM-01 17 1564924 1564924 C G PRPF8 Missense_Mutation p.E1395Q 0.19 deleterious(0.02) benign(0.373) TCGA-C8-A1HM-01 17 17910739 17910739 G C LRRC48 Intron 0.42 TCGA-C8-A1HM-01 17 25748131 25748131 G C TBC1D3P5 RNA 0.12 TCGA-C8-A1HM-01 17 26824217 26824217 C G SLC13A2 Missense_Mutation p.S619C 0.11 deleterious(0.01) possibly_damaging(0.572) TCGA-C8-A1HM-01 17 27052974 27052974 G A TLCD1 Silent p.L48L 0.17 TCGA-C8-A1HM-01 17 27890066 27890066 C G ABHD15 Missense_Mutation p.R307T 0.13 tolerated(0.29) benign(0.063) TCGA-C8-A1HM-01 17 29111025 29111025 G C CRLF3 3'UTR 0.38 TCGA-C8-A1HM-01 17 36887606 36887606 G C CISD3 Missense_Mutation p.V40L 0.60 tolerated(0.09) benign(0.275) TCGA-C8-A1HM-01 17 43545712 43545712 C G PLEKHM1 Missense_Mutation p.E391Q 0.10 tolerated(0.55) benign(0) TCGA-C8-A1HM-01 17 5418221 5418221 C G NLRP1 Missense_Mutation p.Q1425H 0.18 deleterious(0) probably_damaging(0.933) TCGA-C8-A1HM-01 17 57060207 57060207 C A PPM1E 3'Flank 0.05 TCGA-C8-A1HM-01 17 57126636 57126636 G C TRIM37 Missense_Mutation p.S478C 0.13 deleterious_low_confidence(0) benign(0.001) TCGA-C8-A1HM-01 17 57761039 57761039 G A CLTC Silent p.K1415K 0.05 TCGA-C8-A1HM-01 17 66538857 66538857 C G FAM20A Missense_Mutation p.Q302H 0.06 tolerated(0.37) probably_damaging(0.971) TCGA-C8-A1HM-01 17 7495896 7495896 C T FXR2 Missense_Mutation p.R584H 0.56 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-C8-A1HM-01 17 75196587 75196587 C G SEC14L1 Missense_Mutation p.L281V 0.11 deleterious(0.02) possibly_damaging(0.728) TCGA-C8-A1HM-01 17 7578268 7578268 A G TP53 Missense_Mutation p.L194P 0.58 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 17 79650736 79650736 C G ARL16 Silent p.V40V 0.73 TCGA-C8-A1HM-01 17 79661866 79661866 G A HGS Missense_Mutation p.E320K 0.19 tolerated(0.09) probably_damaging(0.931) TCGA-C8-A1HM-01 18 3134662 3134662 G A MYOM1 Silent p.P790P 0.54 TCGA-C8-A1HM-01 18 33234629 33234629 G A GALNT1 Translation_Start_Site p.M1? 0.06 tolerated_low_confidence(0.08) probably_damaging(0.989) TCGA-C8-A1HM-01 18 55833023 55833023 G C NEDD4L Missense_Mutation p.E18Q 0.48 tolerated(0.33) benign(0.004) TCGA-C8-A1HM-01 19 11287449 11287449 G C KANK2 Nonsense_Mutation p.S530* 0.13 TCGA-C8-A1HM-01 19 12256762 12256762 G A ZNF625 Missense_Mutation p.H157Y 0.13 deleterious(0.01) possibly_damaging(0.636) TCGA-C8-A1HM-01 19 17660294 17660294 C G FAM129C Missense_Mutation p.L601V 0.40 deleterious(0.05) benign(0.192) TCGA-C8-A1HM-01 19 18309660 18309660 C G RAB3A Splice_Site p.X116_splice 0.22 TCGA-C8-A1HM-01 19 18729040 18729040 C T TMEM59L Missense_Mutation p.S247F 0.18 deleterious(0.04) possibly_damaging(0.646) TCGA-C8-A1HM-01 19 23937695 23937695 C T ZNF681 Silent p.L52L 0.12 TCGA-C8-A1HM-01 19 2877997 2877997 C T ZNF556 Silent p.S347S 0.06 TCGA-C8-A1HM-01 19 33417111 33417111 G C CEP89 Silent p.L383L 0.15 TCGA-C8-A1HM-01 19 38911817 38911817 C T RASGRP4 Missense_Mutation p.E78K 0.37 deleterious(0.03) benign(0) TCGA-C8-A1HM-01 19 3938653 3938653 G A NMRK2 Silent p.L73L 0.70 TCGA-C8-A1HM-01 19 40741906 40741906 C T AKT2 Missense_Mutation p.E356K 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A1HM-01 19 40880424 40880424 C G PLD3 Missense_Mutation p.P306A 0.26 tolerated(0.82) benign(0.115) TCGA-C8-A1HM-01 19 41224139 41224139 G C ITPKC Missense_Mutation p.E367Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-C8-A1HM-01 19 42259541 42259541 G C CEACAM6 5'UTR 0.29 TCGA-C8-A1HM-01 19 42315384 42315384 G A CEACAM3 3'UTR 0.35 TCGA-C8-A1HM-01 19 49143054 49143054 G C CA11 Silent p.L186L 0.32 TCGA-C8-A1HM-01 19 4941544 4941544 G T UHRF1 RNA 0.35 TCGA-C8-A1HM-01 19 49494681 49494681 C T GYS1 Missense_Mutation p.D60N 0.12 deleterious(0.05) benign(0.438) TCGA-C8-A1HM-01 19 50840292 50840292 C G NAPSB RNA 0.16 TCGA-C8-A1HM-01 19 51535174 51535174 C T KLK12 Missense_Mutation p.E139K 0.08 tolerated(1) benign(0.002) TCGA-C8-A1HM-01 19 51649334 51649334 C T SIGLEC7 Missense_Mutation p.S328F 0.39 deleterious(0.01) probably_damaging(1) TCGA-C8-A1HM-01 19 52132711 52132711 G A SIGLEC5 Silent p.L200L 0.13 TCGA-C8-A1HM-01 19 52919123 52919123 C G ZNF528 Missense_Mutation p.L340V 0.07 deleterious(0) probably_damaging(0.992) TCGA-C8-A1HM-01 19 54723032 54723032 G C LILRB3 Silent p.L464L 0.15 TCGA-C8-A1HM-01 19 55112350 55112350 G A LILRA1 3'UTR 0.09 TCGA-C8-A1HM-01 19 55670585 55670585 C G DNAAF3 Missense_Mutation p.E558Q 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.597) TCGA-C8-A1HM-01 19 5914426 5914426 C T CAPS Silent p.A3A 0.31 TCGA-C8-A1HM-01 19 9059268 9059268 G A MUC16 Missense_Mutation p.P9393L 0.15 unknown(0) TCGA-C8-A1HM-01 1 114380359 114380359 C G PTPN22 Missense_Mutation p.E555Q 0.16 tolerated(0.08) benign(0.152) TCGA-C8-A1HM-01 1 114445417 114445417 C G AP4B1 Missense_Mutation p.D61H 0.13 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 1 116609809 116609809 G A SLC22A15 3'UTR 0.15 TCGA-C8-A1HM-01 1 155290716 155290716 C G RUSC1 5'Flank 0.05 TCGA-C8-A1HM-01 1 156639318 156639318 C A NES Missense_Mutation p.M1554I 0.17 tolerated(0.09) benign(0.001) TCGA-C8-A1HM-01 1 156641606 156641606 C G NES Missense_Mutation p.D792H 0.12 deleterious(0) possibly_damaging(0.867) TCGA-C8-A1HM-01 1 156641705 156641705 C T NES Missense_Mutation p.E759K 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A1HM-01 1 158532579 158532579 C T OR6P1 Silent p.K272K 0.35 TCGA-C8-A1HM-01 1 159283656 159283656 G C OR10J3 Missense_Mutation p.S265C 0.44 deleterious(0) probably_damaging(0.992) TCGA-C8-A1HM-01 1 173493933 173493933 G A SLC9C2 Silent p.V833V 0.29 TCGA-C8-A1HM-01 1 17599840 17599840 G C PADI3 Missense_Mutation p.E351D 0.15 deleterious(0.01) probably_damaging(0.954) TCGA-C8-A1HM-01 1 179659981 179659981 G A TDRD5 Missense_Mutation p.R1004Q 0.06 tolerated(0.08) possibly_damaging(0.733) TCGA-C8-A1HM-01 1 181452743 181452743 C T CACNA1E 5'Flank 0.30 TCGA-C8-A1HM-01 1 182898837 182898837 C G SHCBP1L Missense_Mutation p.R376T 0.31 deleterious(0) possibly_damaging(0.705) TCGA-C8-A1HM-01 1 183097764 183097764 G A LAMC1 Silent p.E1053E 0.12 TCGA-C8-A1HM-01 1 186908212 186908212 G T PLA2G4A Missense_Mutation p.M256I 0.13 tolerated(0.06) possibly_damaging(0.552) TCGA-C8-A1HM-01 1 186925342 186925342 G C PLA2G4A Missense_Mutation p.R482T 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-C8-A1HM-01 1 196397237 196397237 G A KCNT2 Nonsense_Mutation p.Q328* 0.11 TCGA-C8-A1HM-01 1 197073413 197073413 G C ASPM Silent p.L1656L 0.12 TCGA-C8-A1HM-01 1 200377516 200377516 C G ZNF281 Missense_Mutation p.E440Q 0.10 deleterious(0.03) possibly_damaging(0.575) TCGA-C8-A1HM-01 1 212911672 212911672 C T NSL1 3'UTR 0.37 TCGA-C8-A1HM-01 1 220330691 220330691 G C RAB3GAP2 Missense_Mutation p.S1159C 0.11 tolerated(0.18) probably_damaging(0.919) TCGA-C8-A1HM-01 1 220808759 220808759 G C MARK1 Missense_Mutation p.Q388H 0.10 tolerated(0.17) benign(0.281) TCGA-C8-A1HM-01 1 224301869 224301869 G A FBXO28 Missense_Mutation p.G13E 0.25 deleterious_low_confidence(0) unknown(0) TCGA-C8-A1HM-01 1 224378016 224378016 C T DEGS1 Missense_Mutation p.P274S 0.08 deleterious(0) probably_damaging(0.989) TCGA-C8-A1HM-01 1 226568860 226568860 C T PARP1 Silent p.R403R 0.13 TCGA-C8-A1HM-01 1 226736785 226736785 C G C1orf95 Silent p.L60L 0.34 TCGA-C8-A1HM-01 1 228194782 228194782 C G WNT3A 5'UTR 0.57 TCGA-C8-A1HM-01 1 242048708 242048708 G C EXO1 Missense_Mutation p.K768N 0.09 tolerated(0.07) benign(0.244) TCGA-C8-A1HM-01 1 243303461 243303461 C G CEP170 Intron 0.16 TCGA-C8-A1HM-01 1 243449584 243449584 C G SDCCAG8 Missense_Mutation p.S144C 0.25 tolerated(0.07) probably_damaging(0.914) TCGA-C8-A1HM-01 1 247067320 247067320 C G AHCTF1 Missense_Mutation p.L308F 0.45 deleterious(0.01) possibly_damaging(0.859) TCGA-C8-A1HM-01 1 248402510 248402510 C T OR2M4 Silent p.L94L 0.37 TCGA-C8-A1HM-01 1 32829193 32829193 C T TSSK3 Intron 0.11 TCGA-C8-A1HM-01 1 36479639 36479639 G C AGO3 Missense_Mutation p.E466Q 0.51 tolerated(0.33) benign(0.001) TCGA-C8-A1HM-01 1 43305956 43305956 G A ERMAP Missense_Mutation p.R234Q 0.15 tolerated(0.29) benign(0.015) TCGA-C8-A1HM-01 1 43393372 43393372 G A SLC2A1 Silent p.L394L 0.16 TCGA-C8-A1HM-01 1 49193689 49193689 C G BEND5 Missense_Mutation p.E379Q 0.23 deleterious(0.02) possibly_damaging(0.519) TCGA-C8-A1HM-01 1 53416424 53416424 C G SCP2 Intron 0.17 TCGA-C8-A1HM-01 1 68895512 68895512 C A RPE65 Nonsense_Mutation p.E517* 0.52 TCGA-C8-A1HM-01 1 71544146 71544146 C A ZRANB2 Missense_Mutation p.C71F 0.27 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 1 89607275 89607275 G C GBP7 Missense_Mutation p.I474M 0.13 deleterious(0) probably_damaging(0.997) TCGA-C8-A1HM-01 1 91177785 91177785 G T BARHL2 3'UTR 0.20 TCGA-C8-A1HM-01 1 94486873 94486873 C A ABCA4 Missense_Mutation p.R1647S 0.15 tolerated(0.43) benign(0.009) TCGA-C8-A1HM-01 20 1617003 1617003 C G SIRPG Missense_Mutation p.Q193H 0.24 deleterious(0.04) benign(0.17) TCGA-C8-A1HM-01 20 25281495 25281495 C G ABHD12 Intron 0.10 TCGA-C8-A1HM-01 20 34025184 34025184 C T GDF5 Silent p.S175S 0.19 TCGA-C8-A1HM-01 20 34116530 34116530 C T C20orf173 Missense_Mutation p.R163K 0.35 tolerated(0.11) benign(0.415) TCGA-C8-A1HM-01 20 35284799 35284799 C T NDRG3 Missense_Mutation p.E304K 0.12 deleterious(0) probably_damaging(0.978) TCGA-C8-A1HM-01 20 45132914 45132914 G C ZNF334 Missense_Mutation p.F60L 0.13 tolerated(0.36) benign(0.001) TCGA-C8-A1HM-01 20 47713022 47713022 C T CSE1L 3'UTR 0.07 TCGA-C8-A1HM-01 20 50090599 50090599 C G NFATC2 Silent p.V542V 0.11 TCGA-C8-A1HM-01 20 57269561 57269561 C T NPEPL1 Silent p.A140A 0.07 TCGA-C8-A1HM-01 20 58519648 58519648 C T FAM217B Missense_Mutation p.A217V 0.06 tolerated(0.11) benign(0.076) TCGA-C8-A1HM-01 20 62598782 62598782 C G ZNF512B Missense_Mutation p.K72N 0.10 deleterious(0) possibly_damaging(0.833) TCGA-C8-A1HM-01 20 62610828 62610828 G C SAMD10 5'UTR 0.33 TCGA-C8-A1HM-01 21 31692282 31692282 G C KRTAP26-1 Silent p.L24L 0.15 TCGA-C8-A1HM-01 21 34861131 34861131 C G DNAJC28 Missense_Mutation p.Q190H 0.23 tolerated(0.17) benign(0.018) TCGA-C8-A1HM-01 21 42064818 42064818 G C DSCAM Silent p.V142V 0.12 TCGA-C8-A1HM-01 21 43505408 43505408 G A UMODL1 Silent p.E163E 0.12 TCGA-C8-A1HM-01 21 45209504 45209504 C G RRP1 5'UTR 0.19 TCGA-C8-A1HM-01 21 46047585 46047585 C G KRTAP10-9 Missense_Mutation p.S166C 0.08 deleterious(0.04) unknown(0) TCGA-C8-A1HM-01 22 31301872 31301872 C T OSBP2 Silent p.L808L 0.25 TCGA-C8-A1HM-01 22 31819322 31819322 G C DRG1 Missense_Mutation p.K213N 0.58 deleterious(0.01) possibly_damaging(0.794) TCGA-C8-A1HM-01 22 36718471 36718471 C A MYH9 Intron 0.60 TCGA-C8-A1HM-01 22 42032677 42032677 G C XRCC6 Missense_Mutation p.K164N 0.17 deleterious(0) probably_damaging(0.973) TCGA-C8-A1HM-01 2 100210557 100210557 C T AFF3 Silent p.E547E 0.29 TCGA-C8-A1HM-01 2 101186079 101186079 G A PDCL3 Silent p.K88K 0.27 TCGA-C8-A1HM-01 2 107004121 107004121 A C PLGLA Intron 0.09 TCGA-C8-A1HM-01 2 109404510 109404510 A G CCDC138 Missense_Mutation p.Q39R 0.24 tolerated_low_confidence(0.18) benign(0.005) TCGA-C8-A1HM-01 2 113089587 113089587 C T ZC3H6 Missense_Mutation p.S1031L 0.10 deleterious(0) benign(0.367) TCGA-C8-A1HM-01 2 122215266 122215266 C G CLASP1 Missense_Mutation p.R461T 0.06 deleterious(0) probably_damaging(0.917) TCGA-C8-A1HM-01 2 144714895 144714895 C G GTDC1 Missense_Mutation p.E333Q 0.21 tolerated(0.09) probably_damaging(0.997) TCGA-C8-A1HM-01 2 161056622 161056622 C T ITGB6 5'UTR 0.13 TCGA-C8-A1HM-01 2 164467534 164467534 G A FIGN Missense_Mutation p.P270S 0.30 tolerated(0.28) possibly_damaging(0.857) TCGA-C8-A1HM-01 2 165578606 165578606 C G COBLL1 Missense_Mutation p.M325I 0.05 tolerated(0.33) benign(0.091) TCGA-C8-A1HM-01 2 166850813 166850813 C G SCN1A Missense_Mutation p.Q1565H 0.09 deleterious(0.02) probably_damaging(0.978) TCGA-C8-A1HM-01 2 169995097 169995097 G A LRP2 Missense_Mutation p.S4503L 0.12 benign(0.064) TCGA-C8-A1HM-01 2 170917689 170917689 G C UBR3 Missense_Mutation p.C1629S 0.23 tolerated(0.41) benign(0.001) TCGA-C8-A1HM-01 2 172314580 172314580 G A DCAF17 Missense_Mutation p.E243K 0.17 tolerated(0.28) benign(0.034) TCGA-C8-A1HM-01 2 173349861 173349861 G A ITGA6 Missense_Mutation p.D575N 0.28 deleterious(0) probably_damaging(0.991) TCGA-C8-A1HM-01 2 173423483 173423483 G C PDK1 Missense_Mutation p.E82Q 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-C8-A1HM-01 2 179441677 179441677 C G TTN Missense_Mutation p.E23129Q 0.16 TCGA-C8-A1HM-01 2 1795704 1795704 G C MYT1L Missense_Mutation p.Q1164E 0.30 deleterious(0.02) possibly_damaging(0.671) TCGA-C8-A1HM-01 2 179605821 179605821 C G TTN Missense_Mutation p.E4047Q 0.21 TCGA-C8-A1HM-01 2 188216927 188216927 C T CALCRL Missense_Mutation p.E348K 0.09 deleterious(0) benign(0.158) TCGA-C8-A1HM-01 2 197065945 197065945 C A HECW2 3'UTR 0.28 TCGA-C8-A1HM-01 2 198498586 198498586 C T RFTN2 Missense_Mutation p.E192K 0.09 deleterious(0.03) possibly_damaging(0.547) TCGA-C8-A1HM-01 2 210680045 210680045 C T UNC80 Missense_Mutation p.S422L 0.19 possibly_damaging(0.838) TCGA-C8-A1HM-01 2 21232398 21232398 G C APOB Missense_Mutation p.Q2448E 0.18 probably_damaging(0.952) TCGA-C8-A1HM-01 2 220416900 220416900 C T OBSL1 Missense_Mutation p.E1783K 0.42 tolerated(0.25) possibly_damaging(0.901) TCGA-C8-A1HM-01 2 232390053 232390053 C G NMUR1 Missense_Mutation p.D328H 0.21 deleterious(0.01) possibly_damaging(0.748) TCGA-C8-A1HM-01 2 238725683 238725683 G A RBM44 Missense_Mutation p.G42S 0.24 tolerated(0.06) benign(0.324) TCGA-C8-A1HM-01 2 27248570 27248570 G T MAPRE3 Nonsense_Mutation p.E197* 0.17 TCGA-C8-A1HM-01 2 32093556 32093556 G A MEMO1 Silent p.I256I 0.07 TCGA-C8-A1HM-01 2 56094242 56094242 C G EFEMP1 Missense_Mutation p.R483T 0.33 deleterious(0) probably_damaging(0.997) TCGA-C8-A1HM-01 2 66739421 66739421 C G MEIS1 Missense_Mutation p.L295V 0.11 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 2 70314894 70314894 G C PCBP1 Missense_Mutation p.E7Q 0.15 deleterious(0) probably_damaging(0.946) TCGA-C8-A1HM-01 2 70917942 70917942 C G ADD2 Missense_Mutation p.Q275H 0.20 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 2 71651842 71651854 AGAGGTAAAAAAT - ZNF638 Splice_Site p.X1530_splice 0.24 TCGA-C8-A1HM-01 2 74776573 74776573 C G LOXL3 Missense_Mutation p.W205C 0.09 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 2 89102238 89102238 G C ANKRD36BP2 RNA 0.28 TCGA-C8-A1HM-01 2 89102471 89102471 G T ANKRD36BP2 RNA 0.35 TCGA-C8-A1HM-01 3 101232020 101232020 G C SENP7 5'UTR 0.49 TCGA-C8-A1HM-01 3 108475375 108475375 C G RETNLB Missense_Mutation p.R63T 0.19 tolerated(0.41) benign(0.032) TCGA-C8-A1HM-01 3 112357123 112357123 C G CCDC80 Missense_Mutation p.E544Q 0.41 deleterious(0.03) benign(0.265) TCGA-C8-A1HM-01 3 133372333 133372333 G T TOPBP1 Missense_Mutation p.H260N 0.15 deleterious(0) possibly_damaging(0.677) TCGA-C8-A1HM-01 3 146173028 146173028 C T PLSCR2 Missense_Mutation p.E180K 0.17 tolerated(0.2) benign(0.247) TCGA-C8-A1HM-01 3 160786638 160786638 G A PPM1L Missense_Mutation p.G259E 0.27 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 3 167184951 167184951 G C SERPINI2 Missense_Mutation p.L124V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A1HM-01 3 169847313 169847313 G C PHC3 Missense_Mutation p.S316C 0.40 deleterious(0.02) possibly_damaging(0.812) TCGA-C8-A1HM-01 3 182662779 182662779 G A DCUN1D1 3'UTR 0.10 TCGA-C8-A1HM-01 3 183508603 183508603 G T YEATS2 Missense_Mutation p.V978L 0.30 tolerated_low_confidence(0.74) benign(0.024) TCGA-C8-A1HM-01 3 186272078 186272078 G A TBCCD1 Silent p.I503I 0.28 TCGA-C8-A1HM-01 3 193353218 193353218 G C OPA1 Missense_Mutation p.Q267H 0.10 deleterious(0.01) possibly_damaging(0.814) TCGA-C8-A1HM-01 3 195591021 195591021 C G TNK2 3'UTR 0.28 TCGA-C8-A1HM-01 3 3137081 3137081 G A IL5RA Missense_Mutation p.R253C 0.11 tolerated(0.09) benign(0.002) TCGA-C8-A1HM-01 3 31621357 31621357 G A STT3B Silent p.L160L 0.05 TCGA-C8-A1HM-01 3 33138625 33138625 C T GLB1 5'UTR 0.20 TCGA-C8-A1HM-01 3 44692688 44692688 C G ZNF35 Missense_Mutation p.I43M 0.18 tolerated_low_confidence(0.12) benign(0.09) TCGA-C8-A1HM-01 3 47719698 47719698 C A SMARCC1 Missense_Mutation p.A521S 0.12 tolerated(0.11) probably_damaging(0.994) TCGA-C8-A1HM-01 3 4808324 4808324 G A ITPR1 Silent p.V1870V 0.07 TCGA-C8-A1HM-01 3 52430733 52430733 G C DNAH1 Missense_Mutation p.E3844Q 0.11 probably_damaging(0.968) TCGA-C8-A1HM-01 3 53707806 53707806 T A CACNA1D Missense_Mutation p.F395I 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-C8-A1HM-01 3 56026144 56026144 G A ERC2 Silent p.I732I 0.13 TCGA-C8-A1HM-01 3 66467612 66467612 C G LRIG1 Missense_Mutation p.L148F 0.10 tolerated(0.58) benign(0) TCGA-C8-A1HM-01 4 100460508 100460508 G C C4orf17 Missense_Mutation p.E273Q 0.21 tolerated(0.06) benign(0.377) TCGA-C8-A1HM-01 4 104061230 104061230 C G CENPE Missense_Mutation p.E1974Q 0.11 possibly_damaging(0.694) TCGA-C8-A1HM-01 4 110384524 110384524 C T SEC24B Silent p.L201L 0.32 TCGA-C8-A1HM-01 4 1161254 1161254 C T SPON2 3'UTR 0.40 TCGA-C8-A1HM-01 4 122800901 122800901 C G TRPC3 Missense_Mutation p.R919T 0.07 deleterious_low_confidence(0.01) benign(0.002) TCGA-C8-A1HM-01 4 123332460 123332460 C G ADAD1 Missense_Mutation p.S311C 0.12 deleterious(0) probably_damaging(0.992) TCGA-C8-A1HM-01 4 174449901 174449901 C G HAND2 Missense_Mutation p.K180N 0.27 deleterious(0.03) benign(0.048) TCGA-C8-A1HM-01 4 175896863 175896863 C T ADAM29 Missense_Mutation p.H63Y 0.32 tolerated(0.11) benign(0.163) TCGA-C8-A1HM-01 4 25315706 25315706 G A ZCCHC4 Missense_Mutation p.E56K 0.07 tolerated(0.22) possibly_damaging(0.874) TCGA-C8-A1HM-01 4 48141011 48141011 A C TEC Missense_Mutation p.S522A 0.17 deleterious(0) possibly_damaging(0.648) TCGA-C8-A1HM-01 4 55561716 55561716 C A KIT Missense_Mutation p.P36T 0.20 tolerated(0.39) benign(0.076) TCGA-C8-A1HM-01 4 65145813 65145813 C A TECRL Missense_Mutation p.A357S 0.14 tolerated(0.15) probably_damaging(0.956) TCGA-C8-A1HM-01 4 7043402 7043402 T G CCDC96 Missense_Mutation p.I422L 0.18 tolerated(0.07) benign(0.326) TCGA-C8-A1HM-01 4 7043447 7043447 C T CCDC96 Missense_Mutation p.D407N 0.19 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 4 77100771 77100771 G C SCARB2 Missense_Mutation p.H171D 0.26 deleterious(0) possibly_damaging(0.812) TCGA-C8-A1HM-01 4 89345780 89345780 A G HERC6 Missense_Mutation p.S621G 0.32 deleterious(0.01) benign(0.293) TCGA-C8-A1HM-01 5 111311071 111311071 C T NREP Missense_Mutation p.R12Q 0.16 deleterious_low_confidence(0) benign(0.023) TCGA-C8-A1HM-01 5 118788211 118788211 C T HSD17B4 5'Flank 0.19 TCGA-C8-A1HM-01 5 134011803 134011803 C T SEC24A Silent p.F414F 0.15 TCGA-C8-A1HM-01 5 140215216 140215216 G C PCDHA7 Missense_Mutation p.E416D 0.20 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-C8-A1HM-01 5 145969537 145969537 T C PPP2R2B Silent p.L438L 0.21 TCGA-C8-A1HM-01 5 147493927 147493927 G T SPINK5 Missense_Mutation p.E630D 0.12 tolerated(1) benign(0.001) TCGA-C8-A1HM-01 5 150913967 150913967 C A FAT2 Intron 0.23 TCGA-C8-A1HM-01 5 15937047 15937047 G A FBXL7 Missense_Mutation p.G410S 0.06 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 5 160025900 160025900 C T ATP10B Missense_Mutation p.M1147I 0.21 deleterious(0) benign(0.18) TCGA-C8-A1HM-01 5 167689555 167689555 G C TENM2 Missense_Mutation p.D2689H 0.14 deleterious(0) probably_damaging(0.966) TCGA-C8-A1HM-01 5 172550082 172550082 G A CREBRF Splice_Site p.X561_splice 0.22 TCGA-C8-A1HM-01 5 176523632 176523632 G A FGFR4 Silent p.E681E 0.30 TCGA-C8-A1HM-01 5 41909903 41909903 C T C5orf51 Missense_Mutation p.P88L 0.16 deleterious(0) probably_damaging(0.962) TCGA-C8-A1HM-01 5 43294891 43294891 G C HMGCS1 Silent p.L326L 0.17 TCGA-C8-A1HM-01 5 453877 453877 G C EXOC3 Missense_Mutation p.E253Q 0.11 deleterious(0.04) benign(0.072) TCGA-C8-A1HM-01 5 45462110 45462110 C T HCN1 Splice_Site p.X284_splice 0.06 TCGA-C8-A1HM-01 5 54931483 54931483 C T SLC38A9 Silent p.V390V 0.25 TCGA-C8-A1HM-01 5 82360907 82360907 C G TMEM167A Missense_Mutation p.L11F 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-C8-A1HM-01 5 94353075 94353075 T G MCTP1 Silent p.R278R 0.16 TCGA-C8-A1HM-01 6 100838202 100838202 G C SIM1 3'UTR 0.13 TCGA-C8-A1HM-01 6 108041958 108041958 G C SCML4 Missense_Mutation p.P308A 0.12 tolerated(0.51) benign(0.001) TCGA-C8-A1HM-01 6 116784770 116784770 G C FAM26F Missense_Mutation p.E284Q 0.49 tolerated(0.18) benign(0.041) TCGA-C8-A1HM-01 6 119510868 119510868 C A MAN1A1 Nonsense_Mutation p.E503* 0.09 TCGA-C8-A1HM-01 6 12121190 12121190 G C HIVEP1 Missense_Mutation p.E388Q 0.11 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 6 125330344 125330344 G C RNF217 5'UTR 0.19 TCGA-C8-A1HM-01 6 131910650 131910650 G C MED23 Silent p.L1298L 0.10 TCGA-C8-A1HM-01 6 134498933 134498933 C T SGK1 Intron 0.13 TCGA-C8-A1HM-01 6 134583066 134583066 C T SGK1 Intron 0.11 TCGA-C8-A1HM-01 6 137322630 137322630 G T IL20RA 3'UTR 0.25 TCGA-C8-A1HM-01 6 137323193 137323193 G A IL20RA Silent p.L388L 0.12 TCGA-C8-A1HM-01 6 13978083 13978083 C A RNF182 Missense_Mutation p.P245T 0.14 tolerated_low_confidence(0.26) benign(0) TCGA-C8-A1HM-01 6 143806383 143806383 C G PEX3 Missense_Mutation p.Q346E 0.49 deleterious(0) probably_damaging(0.983) TCGA-C8-A1HM-01 6 152706962 152706962 C T SYNE1 Silent p.R2833R 0.18 TCGA-C8-A1HM-01 6 154431579 154431579 G A OPRM1 Intron 0.12 TCGA-C8-A1HM-01 6 155450974 155450974 C T TIAM2 Missense_Mutation p.S206L 0.48 deleterious_low_confidence(0.01) benign(0.102) TCGA-C8-A1HM-01 6 159239150 159239150 G C EZR 5'UTR 0.23 TCGA-C8-A1HM-01 6 160183801 160183801 G C ACAT2 Intron 0.12 TCGA-C8-A1HM-01 6 161969928 161969928 C G PARK2 Missense_Mutation p.Q347H 0.40 tolerated(0.12) possibly_damaging(0.663) TCGA-C8-A1HM-01 6 24472849 24472849 C G GPLD1 Missense_Mutation p.S169T 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A1HM-01 6 26205022 26205022 C T HIST1H4E Silent p.L50L 0.14 TCGA-C8-A1HM-01 6 28540923 28540923 G C SCAND3 Missense_Mutation p.L915V 0.29 deleterious(0.01) possibly_damaging(0.848) TCGA-C8-A1HM-01 6 3111036 3111036 G A RIPK1 Splice_Site p.X526_splice 0.13 TCGA-C8-A1HM-01 6 33393617 33393617 C T SYNGAP1 Missense_Mutation p.R78C 0.10 deleterious(0) probably_damaging(0.993) TCGA-C8-A1HM-01 6 33662776 33662776 G A ITPR3 Missense_Mutation p.E2621K 0.59 deleterious(0) possibly_damaging(0.833) TCGA-C8-A1HM-01 6 43025966 43025966 C T MRPL2 Missense_Mutation p.M34I 0.13 tolerated_low_confidence(0.57) benign(0) TCGA-C8-A1HM-01 6 43409655 43409655 G C ABCC10 Missense_Mutation p.G728A 0.12 deleterious(0.01) probably_damaging(1) TCGA-C8-A1HM-01 6 46047914 46047914 T GGTCG CLIC5 Frame_Shift_Ins p.Q24Rfs*7 0.35 TCGA-C8-A1HM-01 6 47541929 47541929 C G CD2AP Missense_Mutation p.S224C 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-C8-A1HM-01 6 55142342 55142342 G A HCRTR2 Silent p.V309V 0.20 TCGA-C8-A1HM-01 6 64940650 64940650 C A EYS Missense_Mutation p.D2087Y 0.13 deleterious(0.03) possibly_damaging(0.461) TCGA-C8-A1HM-01 6 73110378 73110378 C G RIMS1 Missense_Mutation p.L1681V 0.23 deleterious(0) possibly_damaging(0.621) TCGA-C8-A1HM-01 6 75893674 75893674 G A COL12A1 Missense_Mutation p.S395L 0.14 benign(0.027) TCGA-C8-A1HM-01 6 96997292 96997292 C G UFL1 Missense_Mutation p.L509V 0.10 deleterious(0) probably_damaging(0.947) TCGA-C8-A1HM-01 7 100405049 100405049 C G EPHB4 Missense_Mutation p.D758H 0.43 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 7 107577624 107577624 G A LAMB1 Missense_Mutation p.S1287F 0.54 deleterious(0.04) benign(0.128) TCGA-C8-A1HM-01 7 116199333 116199333 G C CAV1 Missense_Mutation p.E177Q 0.18 deleterious(0.01) probably_damaging(0.909) TCGA-C8-A1HM-01 7 132470412 132470412 C G CHCHD3 Missense_Mutation p.E224Q 0.53 tolerated(0.66) benign(0.003) TCGA-C8-A1HM-01 7 133160142 133160142 C G EXOC4 Missense_Mutation p.Q415E 0.14 tolerated(0.85) benign(0.428) TCGA-C8-A1HM-01 7 141310992 141310992 C G AGK Intron 0.41 TCGA-C8-A1HM-01 7 141536104 141536104 C T PRSS37 3'UTR 0.17 TCGA-C8-A1HM-01 7 150765003 150765003 G A SLC4A2 Missense_Mutation p.E337K 0.24 deleterious(0.02) benign(0.201) TCGA-C8-A1HM-01 7 150922031 150922031 C G ABCF2 Missense_Mutation p.K66N 0.20 tolerated(0.31) benign(0.288) TCGA-C8-A1HM-01 7 1539910 1539910 G C INTS1 Missense_Mutation p.Q148E 0.26 tolerated(0.17) benign(0.164) TCGA-C8-A1HM-01 7 1786736 1786736 G A ELFN1 3'UTR 0.19 TCGA-C8-A1HM-01 7 23809284 23809284 C T STK31 Missense_Mutation p.S541L 0.15 tolerated(0.07) benign(0.007) TCGA-C8-A1HM-01 7 26686201 26686201 C A C7orf71 3'UTR 0.30 TCGA-C8-A1HM-01 7 30706918 30706918 G C CRHR2 Missense_Mutation p.R108G 0.37 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HM-01 7 57187421 57187421 T C ZNF479 3'UTR 0.19 TCGA-C8-A1HM-01 7 6639569 6639569 G A C7orf26 Silent p.L230L 0.08 TCGA-C8-A1HM-01 7 73011917 73011917 G A MLXIPL Missense_Mutation p.P400S 0.26 tolerated(0.88) benign(0) TCGA-C8-A1HM-01 7 75609733 75609735 CCA - POR In_Frame_Del p.T149del 0.15 TCGA-C8-A1HM-01 7 82784780 82784780 G A PCLO Nonsense_Mutation p.Q393* 0.14 TCGA-C8-A1HM-01 8 10587809 10587809 G A SOX7 Silent p.I45I 0.47 TCGA-C8-A1HM-01 8 110498987 110498987 G C PKHD1L1 Missense_Mutation p.E3273Q 0.09 tolerated(0.29) benign(0.001) TCGA-C8-A1HM-01 8 110523136 110523136 G C PKHD1L1 Silent p.L3842L 0.56 TCGA-C8-A1HM-01 8 120429179 120429179 G C NOV Missense_Mutation p.D94H 0.08 tolerated(0.17) possibly_damaging(0.901) TCGA-C8-A1HM-01 8 124346529 124346529 C G ATAD2 Missense_Mutation p.R1082T 0.59 deleterious(0) possibly_damaging(0.834) TCGA-C8-A1HM-01 8 12592797 12592797 C G LONRF1 Missense_Mutation p.E522Q 0.03 tolerated(0.22) benign(0.347) TCGA-C8-A1HM-01 8 139707101 139707101 C G COL22A1 Missense_Mutation p.E872Q 0.07 probably_damaging(0.987) TCGA-C8-A1HM-01 8 141900716 141900716 G A PTK2 Missense_Mutation p.H41Y 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-C8-A1HM-01 8 142367126 142367126 C T GPR20 Missense_Mutation p.V300I 0.28 tolerated(0.07) benign(0.075) TCGA-C8-A1HM-01 8 143993476 143993476 G C CYP11B2 Missense_Mutation p.Q478E 0.50 deleterious(0.04) benign(0.403) TCGA-C8-A1HM-01 8 144919609 144919609 G A NRBP2 Missense_Mutation p.P349L 0.06 tolerated(0.42) benign(0.003) TCGA-C8-A1HM-01 8 145112528 145112528 G A OPLAH Silent p.N415N 0.47 TCGA-C8-A1HM-01 8 145112928 145112928 G T OPLAH Missense_Mutation p.S358Y 0.15 deleterious(0) probably_damaging(1) TCGA-C8-A1HM-01 8 145140888 145140888 G A GPAA1 Missense_Mutation p.E576K 0.27 deleterious(0.02) benign(0.104) TCGA-C8-A1HM-01 8 17554971 17554971 C G MTUS1 Intron 0.26 TCGA-C8-A1HM-01 8 27668640 27668640 C T PBK Missense_Mutation p.E203K 0.20 tolerated(0.44) benign(0.052) TCGA-C8-A1HM-01 8 67578968 67578968 G C VCPIP1 Missense_Mutation p.R76G 0.19 deleterious(0) probably_damaging(0.983) TCGA-C8-A1HM-01 8 68204172 68204172 G C ARFGEF1 Missense_Mutation p.L276V 0.06 tolerated(0.29) benign(0) TCGA-C8-A1HM-01 8 68204283 68204283 G A ARFGEF1 Missense_Mutation p.H239Y 0.08 tolerated(0.06) benign(0.043) TCGA-C8-A1HM-01 8 68204307 68204307 G A ARFGEF1 Silent p.L231L 0.08 TCGA-C8-A1HM-01 8 73480416 73480416 C T KCNB2 Silent p.N149N 0.49 TCGA-C8-A1HM-01 8 74333628 74333628 C G STAU2 Missense_Mutation p.K564N 0.08 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-C8-A1HM-01 8 80965638 80965638 G C TPD52 Missense_Mutation p.Q95E 0.16 deleterious(0) possibly_damaging(0.852) TCGA-C8-A1HM-01 8 92346607 92346607 C T SLC26A7 Missense_Mutation p.L243F 0.10 tolerated(0.17) probably_damaging(0.923) TCGA-C8-A1HM-01 8 97274286 97274286 G C PTDSS1 Silent p.G6G 0.22 TCGA-C8-A1HM-01 8 98155248 98155248 G A CPQ Missense_Mutation p.G419E 0.19 deleterious(0) probably_damaging(0.98) TCGA-C8-A1HM-01 9 108127819 108127819 C T SLC44A1 Missense_Mutation p.R437C 0.60 tolerated(0.35) benign(0.035) TCGA-C8-A1HM-01 9 109688576 109688576 G A ZNF462 Missense_Mutation p.E795K 0.27 possibly_damaging(0.527) TCGA-C8-A1HM-01 9 111812870 111812870 G A TMEM245 Missense_Mutation p.L653F 0.11 deleterious(0.05) probably_damaging(0.962) TCGA-C8-A1HM-01 9 126794835 126794835 C G LHX2 Missense_Mutation p.S357W 0.31 deleterious(0) probably_damaging(0.996) TCGA-C8-A1HM-01 9 130097556 130097556 G C GARNL3 Missense_Mutation p.E273Q 0.30 tolerated(0.06) benign(0.168) TCGA-C8-A1HM-01 9 33442427 33442427 G A AQP3 Silent p.T194T 0.54 TCGA-C8-A1HM-01 9 79326181 79326181 C A PRUNE2 Missense_Mutation p.D337Y 0.35 deleterious(0) probably_damaging(0.983) TCGA-C8-A1HM-01 X 101910384 101910384 G C GPRASP1 Missense_Mutation p.E515Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-C8-A1HM-01 X 107436904 107436904 C T COL4A6 Silent p.L343L 0.10 TCGA-C8-A1HM-01 X 115304469 115304469 C T AGTR2 Silent p.C312C 0.62 TCGA-C8-A1HM-01 X 120182613 120182613 C T GLUD2 Silent p.L359L 0.11 TCGA-C8-A1HM-01 X 122561910 122561910 G T GRIA3 Nonsense_Mutation p.E666* 0.39 TCGA-C8-A1HM-01 X 153278076 153278076 T C IRAK1 Missense_Mutation p.I662V 0.61 tolerated(0.1) probably_damaging(0.995) TCGA-C8-A1HM-01 X 18278362 18278362 G A SCML2 Missense_Mutation p.S333L 0.07 tolerated(0.08) benign(0.004) TCGA-C8-A1HM-01 X 18638050 18638050 C T CDKL5 Silent p.F780F 0.47 TCGA-C8-A1HM-01 X 27765804 27765804 G A DCAF8L2 Silent p.L264L 0.10 TCGA-C8-A1HM-01 X 32429984 32429984 T C DMD Missense_Mutation p.Q1373R 0.23 possibly_damaging(0.465) TCGA-C8-A1HM-01 X 32591867 32591867 C T DMD Missense_Mutation p.E567K 0.09 possibly_damaging(0.828) TCGA-C8-A1HM-01 X 37028630 37028630 C T FAM47C Missense_Mutation p.A716V 0.23 tolerated(0.23) benign(0.004) TCGA-C8-A1HM-01 X 47516968 47516968 C G UXT Intron 0.12 TCGA-C8-A1HM-01 X 55117845 55117845 G A PAGE2 Missense_Mutation p.E92K 0.53 tolerated(0.79) benign(0.036) TCGA-C8-A1HM-01 X 68749773 68749773 G C FAM155B Missense_Mutation p.E465Q 0.07 deleterious(0.01) benign(0.124) TCGA-C8-A1HM-01 X 83320063 83320063 T A RPS6KA6 Missense_Mutation p.Q676H 0.09 deleterious(0.03) benign(0.042) TCGA-C8-A1HN-01 10 8115877 8115877 C GA GATA3 Frame_Shift_Ins p.P409Rfs*99 0.28 TCGA-C8-A1HN-01 11 22844583 22844583 G C SVIP 3'UTR 0.72 TCGA-C8-A1HN-01 11 289954 289954 C T ATHL1 Silent p.Y46Y 0.29 TCGA-C8-A1HN-01 11 64110771 64110771 C T CCDC88B Nonsense_Mutation p.R395* 0.21 TCGA-C8-A1HN-01 11 65293726 65293726 C T SCYL1 Silent p.N169N 0.30 TCGA-C8-A1HN-01 11 73714978 73714978 C T UCP3 Missense_Mutation p.V240M 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A1HN-01 11 77910503 77910503 C T USP35 Intron 0.57 TCGA-C8-A1HN-01 11 7818330 7818330 G A OR5P2 Missense_Mutation p.P54S 0.50 deleterious(0.01) possibly_damaging(0.601) TCGA-C8-A1HN-01 11 7818355 7818355 G A OR5P2 Silent p.I45I 0.51 TCGA-C8-A1HN-01 11 7818403 7818403 G A OR5P2 Silent p.I29I 0.50 TCGA-C8-A1HN-01 12 111951217 111951217 G C ATXN2 Missense_Mutation p.P661R 0.45 benign(0.266) TCGA-C8-A1HN-01 12 115120697 115120698 - GACC TBX3 Frame_Shift_Ins p.K104Vfs*8 0.20 TCGA-C8-A1HN-01 12 130827177 130827177 G A PIWIL1 Missense_Mutation p.R14H 0.29 tolerated(0.3) benign(0.133) TCGA-C8-A1HN-01 12 4479664 4479664 G A FGF23 Missense_Mutation p.P201S 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-C8-A1HN-01 12 52981585 52981585 G A KRT72 Silent p.C380C 0.28 TCGA-C8-A1HN-01 12 56349318 56349318 T A PMEL Silent p.T564T 0.55 TCGA-C8-A1HN-01 12 6230460 6230460 G A VWF Nonsense_Mutation p.R34* 0.16 TCGA-C8-A1HN-01 14 69256807 69256807 T A ZFP36L1 Nonsense_Mutation p.K154* 0.71 TCGA-C8-A1HN-01 15 33359773 33359773 C T FMN1 Missense_Mutation p.E105K 0.15 tolerated_low_confidence(0.21) unknown(0) TCGA-C8-A1HN-01 15 53889357 53889358 CA - WDR72 Nonsense_Mutation p.C1022* 0.19 TCGA-C8-A1HN-01 17 40179106 40179106 G A ZNF385C Missense_Mutation p.R437C 0.66 tolerated(0.06) benign(0.021) TCGA-C8-A1HN-01 17 41020752 41020752 T C AOC4P RNA 0.05 TCGA-C8-A1HN-01 18 43503333 43503333 T C EPG5 Silent p.Q913Q 0.11 TCGA-C8-A1HN-01 19 12059318 12059318 G T ZNF700 Missense_Mutation p.G160V 0.34 deleterious(0.01) possibly_damaging(0.884) TCGA-C8-A1HN-01 19 19162851 19162851 C G ARMC6 Missense_Mutation p.H234D 0.31 tolerated(0.64) benign(0.002) TCGA-C8-A1HN-01 19 42799050 42799050 C T CIC Missense_Mutation p.R1512C 0.56 probably_damaging(0.973) TCGA-C8-A1HN-01 1 200587127 200587128 CT - KIF14 Frame_Shift_Del p.S242Qfs*15 0.17 TCGA-C8-A1HN-01 1 240256880 240256880 G A FMN2 Missense_Mutation p.A491T 0.27 unknown(0) TCGA-C8-A1HN-01 20 34091462 34091462 G A CEP250 Silent p.L1755L 0.10 TCGA-C8-A1HN-01 20 35869770 35869770 A C RPN2 3'UTR 0.04 TCGA-C8-A1HN-01 20 35869831 35869831 A C RPN2 3'UTR 0.07 TCGA-C8-A1HN-01 20 39792360 39792360 C A PLCG1 Silent p.V299V 0.15 TCGA-C8-A1HN-01 20 43926557 43926557 C T MATN4 Splice_Site p.X527_splice 0.27 TCGA-C8-A1HN-01 20 44054358 44054358 C T PIGT Silent p.F543F 0.07 TCGA-C8-A1HN-01 20 52788245 52788245 G A CYP24A1 Intron 0.04 TCGA-C8-A1HN-01 20 61512815 61512815 T C DIDO1 Missense_Mutation p.E1498G 0.10 possibly_damaging(0.521) TCGA-C8-A1HN-01 20 61512828 61512828 C T DIDO1 Missense_Mutation p.E1494K 0.08 possibly_damaging(0.601) TCGA-C8-A1HN-01 21 30969036 30969036 G A GRIK1-AS2 3'UTR 0.38 TCGA-C8-A1HN-01 2 155711277 155711277 G T KCNJ3 Nonsense_Mutation p.E320* 0.13 TCGA-C8-A1HN-01 2 160690697 160690697 T C LY75-CD302 Silent p.P1233P 0.28 TCGA-C8-A1HN-01 2 220427131 220427131 G T OBSL1 Silent p.T982T 0.10 TCGA-C8-A1HN-01 2 47300972 47300972 C T TTC7A Silent p.N829N 0.13 TCGA-C8-A1HN-01 2 48809312 48809312 C A STON1-GTF2A1L Missense_Mutation p.L514M 0.04 deleterious(0) probably_damaging(1) TCGA-C8-A1HN-01 2 8464804 8464804 C A LINC00299 RNA 0.26 TCGA-C8-A1HN-01 2 8926362 8926362 C A KIDINS220 Missense_Mutation p.R638L 0.28 deleterious(0) probably_damaging(1) TCGA-C8-A1HN-01 2 90154236 90154236 G C IGKV3D-15 Missense_Mutation p.C108S 0.15 deleterious(0) probably_damaging(1) TCGA-C8-A1HN-01 3 133307027 133307027 T G CDV3 3'UTR 0.40 TCGA-C8-A1HN-01 3 170846562 170846562 T G TNIK Missense_Mutation p.S572R 0.21 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-C8-A1HN-01 3 46062898 46062898 G A XCR1 Missense_Mutation p.T181M 0.22 tolerated(0.31) benign(0.001) TCGA-C8-A1HN-01 3 48895116 48895116 A G SLC25A20 3'UTR 0.44 TCGA-C8-A1HN-01 3 50225261 50225261 C T SEMA3F Nonsense_Mutation p.R691* 0.39 TCGA-C8-A1HN-01 3 64004302 64004302 G A PSMD6 Missense_Mutation p.R267C 0.26 deleterious(0.01) possibly_damaging(0.901) TCGA-C8-A1HN-01 4 151169509 151169509 G T DCLK2 Missense_Mutation p.G660V 0.06 tolerated(0.3) benign(0.004) TCGA-C8-A1HN-01 4 152640617 152640617 G T PET112 Missense_Mutation p.S134Y 0.16 deleterious(0) probably_damaging(1) TCGA-C8-A1HN-01 4 154335914 154335914 G T MND1 Missense_Mutation p.A175S 0.15 tolerated(0.75) benign(0.021) TCGA-C8-A1HN-01 4 20555483 20555483 T A SLIT2 Missense_Mutation p.W873R 0.03 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HN-01 5 148590290 148590290 G T ABLIM3 Missense_Mutation p.D193Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-C8-A1HN-01 5 60839535 60839535 G A ZSWIM6 Silent p.A1013A 0.35 TCGA-C8-A1HN-01 5 79473765 79473765 C G SERINC5 Missense_Mutation p.C106S 0.25 tolerated(0.32) possibly_damaging(0.672) TCGA-C8-A1HN-01 6 130762622 130762622 G A TMEM200A Missense_Mutation p.G352E 0.30 tolerated(0.32) benign(0.022) TCGA-C8-A1HN-01 6 33134289 33134289 C T COL11A2 Splice_Site p.X1378_splice 0.21 TCGA-C8-A1HN-01 6 44250153 44250153 C A TCTE1 Silent p.L330L 0.24 TCGA-C8-A1HN-01 7 110763274 110763274 A G LRRN3 Missense_Mutation p.H149R 0.21 deleterious(0) probably_damaging(1) TCGA-C8-A1HN-01 7 134613541 134613541 G A CALD1 Silent p.E36E 0.17 TCGA-C8-A1HN-01 7 8167582 8167583 GG - ICA1 Frame_Shift_Del p.P417Qfs*30 0.25 TCGA-C8-A1HN-01 8 33451195 33451195 G A DUSP26 Missense_Mutation p.R98W 0.04 deleterious(0) possibly_damaging(0.863) TCGA-C8-A1HN-01 8 69000006 69000006 G A PREX2 Missense_Mutation p.R692Q 0.66 deleterious(0.01) probably_damaging(0.996) TCGA-C8-A1HN-01 9 135772688 135772688 C T TSC1 Missense_Mutation p.R953K 0.53 tolerated(0.2) benign(0.002) TCGA-C8-A1HN-01 9 40773232 40773232 T G ZNF658 Silent p.T681T 0.37 TCGA-C8-A1HN-01 X 106957953 106957953 A G TSC22D3 Silent p.Y133Y 0.20 TCGA-C8-A1HN-01 X 107412746 107412746 T C COL4A6 Missense_Mutation p.R1225G 0.18 probably_damaging(0.953) TCGA-C8-A1HN-01 X 3238284 3238284 A T MXRA5 Missense_Mutation p.S1814R 0.20 tolerated(0.4) benign(0.043) TCGA-C8-A1HN-01 X 53432455 53432455 G A SMC1A Silent p.R627R 0.12 TCGA-C8-A1HN-01 X 53453289 53453289 G A RIBC1 Missense_Mutation p.R22Q 0.38 tolerated(0.26) benign(0.175) TCGA-C8-A1HN-01 X 9914800 9914800 C T SHROOM2 Silent p.I1558I 0.33 TCGA-C8-A1HO-01 10 21461309 21461310 - A NEBL-AS1 5'Flank 0.34 TCGA-C8-A1HO-01 10 8111494 8111495 - CTGGAGG GATA3 Frame_Shift_Ins p.R331Lfs*24 0.30 TCGA-C8-A1HO-01 11 128710052 128710052 C T KCNJ1 Silent p.R48R 0.05 TCGA-C8-A1HO-01 11 17496468 17496468 C A ABCC8 Silent p.L85L 0.46 TCGA-C8-A1HO-01 11 51515904 51515904 A G OR4C46 Missense_Mutation p.N208S 0.42 tolerated_low_confidence(0.43) benign(0.057) TCGA-C8-A1HO-01 11 73687705 73687705 C T UCP2 Silent p.L205L 0.23 TCGA-C8-A1HO-01 12 112642368 112642368 G A HECTD4 Missense_Mutation p.P2585S 0.07 probably_damaging(1) TCGA-C8-A1HO-01 12 76741035 76741035 C T BBS10 Missense_Mutation p.D244N 0.39 deleterious(0) probably_damaging(0.998) TCGA-C8-A1HO-01 13 49852564 49852564 G A CDADC1 Missense_Mutation p.D377N 0.06 tolerated(0.17) possibly_damaging(0.823) TCGA-C8-A1HO-01 16 68856122 68856122 G A CDH1 Missense_Mutation p.D644N 0.46 tolerated(0.39) benign(0.013) TCGA-C8-A1HO-01 17 12011212 12011212 A T MAP2K4 Nonsense_Mutation p.K207* 0.72 TCGA-C8-A1HO-01 17 56769983 56769983 G A RAD51C 5'UTR 0.23 TCGA-C8-A1HO-01 17 56772367 56772367 G A RAD51C Missense_Mutation p.R74K 0.31 tolerated(0.46) benign(0.002) TCGA-C8-A1HO-01 17 56772384 56772384 G A RAD51C Missense_Mutation p.E80K 0.29 tolerated(0.88) benign(0.102) TCGA-C8-A1HO-01 17 56772483 56772483 G A RAD51C Missense_Mutation p.G113S 0.35 deleterious(0) probably_damaging(0.994) TCGA-C8-A1HO-01 17 56772500 56772500 G A RAD51C Missense_Mutation p.M118I 0.33 tolerated(0.16) benign(0.007) TCGA-C8-A1HO-01 17 61396372 61396372 C G TANC2 Missense_Mutation p.S425C 0.07 deleterious(0.01) benign(0.011) TCGA-C8-A1HO-01 17 61396376 61396376 C T TANC2 Silent p.I426I 0.07 TCGA-C8-A1HO-01 17 61482535 61482535 G A TANC2 Silent p.L1054L 0.08 TCGA-C8-A1HO-01 17 76554208 76554208 G T DNAH17 Silent p.I720I 0.09 TCGA-C8-A1HO-01 17 76554297 76554297 G A DNAH17 Nonsense_Mutation p.Q691* 0.08 TCGA-C8-A1HO-01 17 80422247 80422247 G A NARF Missense_Mutation p.G65R 0.63 tolerated(0.07) benign(0.111) TCGA-C8-A1HO-01 18 28742499 28742499 A G DSC1 Missense_Mutation p.L20P 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A1HO-01 19 33991853 33991853 G A PEPD Silent p.Y128Y 0.41 TCGA-C8-A1HO-01 19 35801453 35801453 G T MAG Missense_Mutation p.R508L 0.08 tolerated(0.15) benign(0.155) TCGA-C8-A1HO-01 19 39096100 39096100 C T MAP4K1 Silent p.E465E 0.38 TCGA-C8-A1HO-01 1 114340405 114340405 T C RSBN1 Silent p.R319R 0.41 TCGA-C8-A1HO-01 1 186312558 186312558 G C TPR Missense_Mutation p.A1217G 0.29 benign(0.021) TCGA-C8-A1HO-01 1 91727849 91727849 T G HFM1 Missense_Mutation p.K1396T 0.09 deleterious_low_confidence(0.02) benign(0.075) TCGA-C8-A1HO-01 20 23016243 23016243 C T SSTR4 Silent p.D41D 0.33 TCGA-C8-A1HO-01 2 197986120 197986120 G A ANKRD44 Missense_Mutation p.A281V 0.39 tolerated(0.45) benign(0.327) TCGA-C8-A1HO-01 2 29293999 29293999 G T C2orf71 Silent p.T1043T 0.24 TCGA-C8-A1HO-01 2 56097974 56097974 G A EFEMP1 Nonsense_Mutation p.R401* 0.39 TCGA-C8-A1HO-01 3 195515766 195515766 A G MUC4 Silent p.S895S 0.32 TCGA-C8-A1HO-01 4 59446 59446 C A ZNF595 Missense_Mutation p.L43M 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-C8-A1HO-01 5 140769108 140769108 C T PCDHGB4 Missense_Mutation p.R553C 0.30 deleterious(0.03) benign(0.014) TCGA-C8-A1HO-01 5 64859146 64859146 G C PPWD1 Silent p.A3A 0.08 TCGA-C8-A1HO-01 5 64859147 64859147 G T PPWD1 Nonsense_Mutation p.E4* 0.08 TCGA-C8-A1HO-01 5 78919122 78919122 G A PAPD4 Missense_Mutation p.R92H 0.43 deleterious(0.03) probably_damaging(0.983) TCGA-C8-A1HO-01 6 136878950 136878950 C G MAP3K5 Silent p.G1357G 0.69 TCGA-C8-A1HO-01 6 143823670 143823670 C T FUCA2 Missense_Mutation p.R262H 0.14 deleterious(0) probably_damaging(1) TCGA-C8-A1HO-01 7 107114489 107114489 C A GPR22 5'UTR 0.37 TCGA-C8-A1HO-01 7 143421584 143421584 G A FAM115C Missense_Mutation p.G767R 0.46 tolerated(0.16) possibly_damaging(0.807) TCGA-C8-A1HO-01 8 2796075 2796075 G A CSMD1 3'Flank 0.06 TCGA-C8-A1HO-01 8 36644922 36644922 G T KCNU1 Missense_Mutation p.Q98H 0.12 deleterious(0) possibly_damaging(0.892) TCGA-C8-A1HO-01 8 38121844 38121844 G T PPAPDC1B 3'UTR 0.10 TCGA-C8-A1HO-01 8 38121846 38121846 G A PPAPDC1B 3'UTR 0.10 TCGA-C8-A1HO-01 8 43171096 43171096 C A POTEA RNA 0.08 TCGA-C8-A1HO-01 8 43172506 43172506 C G POTEA RNA 0.08 TCGA-C8-A1HO-01 8 43173645 43173645 C G POTEA RNA 0.09 TCGA-C8-A1HO-01 X 107978002 107978002 C T IRS4 Missense_Mutation p.E525K 0.71 deleterious_low_confidence(0.01) unknown(0) TCGA-C8-A26V-01 10 104139146 104139146 G C GBF1 Missense_Mutation p.D1533H 0.71 deleterious(0.01) possibly_damaging(0.593) TCGA-C8-A26V-01 10 104250366 104250366 G C ACTR1A Missense_Mutation p.S18C 0.71 deleterious(0) probably_damaging(0.992) TCGA-C8-A26V-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.45 TCGA-C8-A26V-01 11 119548355 119548355 G A PVRL1 Missense_Mutation p.P215S 0.04 deleterious(0) probably_damaging(1) TCGA-C8-A26V-01 11 4471266 4471266 C G OR52K2 Missense_Mutation p.Q233E 0.40 deleterious(0.01) benign(0.217) TCGA-C8-A26V-01 11 93460372 93460372 G A KIAA1731 Missense_Mutation p.E2244K 0.30 tolerated(0.05) possibly_damaging(0.628) TCGA-C8-A26V-01 12 28116284 28116284 G A PTHLH Missense_Mutation p.S174L 0.47 tolerated_low_confidence(0.46) benign(0) TCGA-C8-A26V-01 12 52779047 52779047 C G KRT84 Missense_Mutation p.G108A 0.34 tolerated(0.06) probably_damaging(0.992) TCGA-C8-A26V-01 12 53722734 53722734 T C SP7 Silent p.G164G 0.26 TCGA-C8-A26V-01 13 53042449 53042449 C G CKAP2 Missense_Mutation p.L506V 0.56 deleterious(0.01) benign(0.441) TCGA-C8-A26V-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.82 deleterious(0) probably_damaging(0.999) TCGA-C8-A26V-01 14 36096648 36096648 T G RALGAPA1 Silent p.R1663R 0.44 TCGA-C8-A26V-01 15 102190296 102190296 C G TM2D3 Missense_Mutation p.D80H 0.56 deleterious(0) benign(0.03) TCGA-C8-A26V-01 15 29415587 29415587 G A FAM189A1 Silent p.L525L 0.39 TCGA-C8-A26V-01 15 48433458 48433458 G C MYEF2 3'UTR 0.37 TCGA-C8-A26V-01 15 75185065 75185065 G C MPI Missense_Mutation p.E137Q 0.42 deleterious(0) probably_damaging(1) TCGA-C8-A26V-01 16 15022333 15022333 G A RP11-958N24.1 RNA 0.13 TCGA-C8-A26V-01 16 3777933 3777933 G A CREBBP Missense_Mutation p.S2372L 0.43 unknown(0) TCGA-C8-A26V-01 16 67265711 67265711 G A FHOD1 Silent p.T738T 0.09 TCGA-C8-A26V-01 16 67701972 67701972 C T C16orf86 Missense_Mutation p.S175F 0.61 deleterious(0.01) possibly_damaging(0.683) TCGA-C8-A26V-01 17 17122397 17122397 G C FLCN Nonsense_Mutation p.S333* 0.59 TCGA-C8-A26V-01 17 7577586 7577586 A C TP53 Missense_Mutation p.I232S 0.65 deleterious(0) probably_damaging(0.966) TCGA-C8-A26V-01 18 32409129 32409129 A G DTNA Intron 0.07 TCGA-C8-A26V-01 18 43502498 43502498 C G EPG5 Missense_Mutation p.W969C 0.24 deleterious(0) probably_damaging(0.99) TCGA-C8-A26V-01 19 11943836 11943836 G T ZNF440 3'UTR 0.33 TCGA-C8-A26V-01 19 15636257 15636257 G A CYP4F22 Missense_Mutation p.R37H 0.36 tolerated(0.36) benign(0.006) TCGA-C8-A26V-01 19 42558054 42558054 C A GRIK5 Missense_Mutation p.V362F 0.44 deleterious(0) possibly_damaging(0.898) TCGA-C8-A26V-01 19 44038639 44038639 C G ZNF575 Missense_Mutation p.P22R 0.38 tolerated(0.31) benign(0.08) TCGA-C8-A26V-01 19 54234290 54234290 T A MIR518A1 RNA 0.39 TCGA-C8-A26V-01 1 110466502 110466502 C G CSF1 Missense_Mutation p.S420C 0.60 deleterious(0.03) probably_damaging(0.939) TCGA-C8-A26V-01 1 11579485 11579485 G A PTCHD2 Missense_Mutation p.G655R 0.37 deleterious(0.03) possibly_damaging(0.724) TCGA-C8-A26V-01 1 151735549 151735549 C T MRPL9 Missense_Mutation p.R76Q 0.38 deleterious(0.01) possibly_damaging(0.573) TCGA-C8-A26V-01 1 172634780 172634780 C A FASLG Missense_Mutation p.S157Y 0.40 deleterious(0.01) possibly_damaging(0.862) TCGA-C8-A26V-01 1 176564541 176564541 G C PAPPA2 Missense_Mutation p.E601Q 0.32 tolerated(0.06) probably_damaging(0.932) TCGA-C8-A26V-01 1 176659458 176659458 G A PAPPA2 Missense_Mutation p.A775T 0.38 tolerated(0.09) probably_damaging(0.956) TCGA-C8-A26V-01 1 205280937 205280937 A G NUAK2 Missense_Mutation p.I83T 0.28 deleterious(0) probably_damaging(0.999) TCGA-C8-A26V-01 1 230381835 230381835 C A GALNT2 Silent p.I252I 0.24 TCGA-C8-A26V-01 1 33795806 33795806 C A PHC2 Missense_Mutation p.V671L 0.38 deleterious(0) possibly_damaging(0.726) TCGA-C8-A26V-01 1 76397787 76397787 C T ASB17 Missense_Mutation p.D64N 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.811) TCGA-C8-A26V-01 20 10025090 10025090 G A ANKEF1 Missense_Mutation p.E199K 0.07 tolerated(0.1) probably_damaging(0.974) TCGA-C8-A26V-01 20 2297758 2297758 C T TGM3 Silent p.S238S 0.30 TCGA-C8-A26V-01 20 2985705 2985705 C G PTPRA Missense_Mutation p.L248V 0.37 tolerated(0.05) probably_damaging(0.989) TCGA-C8-A26V-01 20 57876517 57876517 G A EDN3 Silent p.Q35Q 0.43 TCGA-C8-A26V-01 20 60904057 60904057 G C LAMA5 Missense_Mutation p.F1430L 0.36 benign(0.272) TCGA-C8-A26V-01 20 62340158 62340158 G A ZGPAT Missense_Mutation p.D76N 0.32 deleterious(0.03) benign(0.066) TCGA-C8-A26V-01 21 31797741 31797741 G C KRTAP13-3 Missense_Mutation p.Q164E 0.28 deleterious(0.01) benign(0.099) TCGA-C8-A26V-01 22 28395192 28395192 G C TTC28 Silent p.V1485V 0.38 TCGA-C8-A26V-01 22 41923399 41923399 C T ACO2 Silent p.I687I 0.32 TCGA-C8-A26V-01 22 46239592 46239592 C T ATXN10 3'UTR 0.40 TCGA-C8-A26V-01 2 113888714 113888714 G A IL1RN Missense_Mutation p.E103K 0.39 tolerated(0.38) benign(0.031) TCGA-C8-A26V-01 2 179563606 179563606 C G TTN Missense_Mutation p.V10240L 0.37 TCGA-C8-A26V-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.26 deleterious(0) probably_damaging(0.96) TCGA-C8-A26V-01 2 26998465 26998465 C T SLC35F6 Silent p.I152I 0.08 TCGA-C8-A26V-01 2 28002536 28002536 C A MRPL33 3'UTR 0.33 TCGA-C8-A26V-01 2 95945629 95945629 A G PROM2 Silent p.L437L 0.36 TCGA-C8-A26V-01 3 123023002 123023002 G A ADCY5 Missense_Mutation p.S824F 0.46 deleterious(0) probably_damaging(0.928) TCGA-C8-A26V-01 3 140409844 140409844 C G TRIM42 Missense_Mutation p.S632C 0.29 tolerated(0.15) probably_damaging(0.986) TCGA-C8-A26V-01 3 15115866 15115866 G C ZFYVE20 Nonsense_Mutation p.S593* 0.58 TCGA-C8-A26V-01 3 185245369 185245369 G C LIPH Silent p.L177L 0.31 TCGA-C8-A26V-01 3 87309075 87309075 G C POU1F1 Missense_Mutation p.S308C 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-C8-A26V-01 4 9784305 9784305 G A DRD5 Missense_Mutation p.D218N 0.40 tolerated(0.07) possibly_damaging(0.631) TCGA-C8-A26V-01 5 132101177 132101177 C G SEPT8 Silent p.V25V 0.25 TCGA-C8-A26V-01 5 134032905 134032905 C T SEC24A Silent p.L692L 0.33 TCGA-C8-A26V-01 5 135693008 135693008 C T TRPC7 Missense_Mutation p.R23H 0.33 deleterious(0.02) probably_damaging(0.96) TCGA-C8-A26V-01 5 156957874 156957874 G A ADAM19 Silent p.H116H 0.36 TCGA-C8-A26V-01 5 161302575 161302575 G A GABRA1 Silent p.V162V 0.25 TCGA-C8-A26V-01 5 176951919 176951919 A C FAM193B Missense_Mutation p.S521R 0.46 deleterious(0) benign(0.287) TCGA-C8-A26V-01 6 102069879 102069879 C T GRIK2 Silent p.F57F 0.42 TCGA-C8-A26V-01 6 109818699 109818699 C T AK9 Missense_Mutation p.E1762K 0.32 deleterious(0) probably_damaging(0.993) TCGA-C8-A26V-01 6 112499344 112499344 C G LAMA4 Missense_Mutation p.D390H 0.39 tolerated(0.06) benign(0.03) TCGA-C8-A26V-01 6 150023155 150023155 T A LATS1 Missense_Mutation p.E36D 0.37 deleterious_low_confidence(0.01) benign(0.156) TCGA-C8-A26V-01 6 150211130 150211130 C G RAET1E Missense_Mutation p.K79N 0.40 deleterious(0.03) possibly_damaging(0.771) TCGA-C8-A26V-01 6 167417542 167417542 G A FGFR1OP Intron 0.50 TCGA-C8-A26V-01 6 30691484 30691484 G C TUBB Silent p.L215L 0.45 TCGA-C8-A26V-01 6 39607395 39607395 C A KIF6 Missense_Mutation p.Q130H 0.29 tolerated(0.23) benign(0.033) TCGA-C8-A26V-01 7 111127384 111127384 G A IMMP2L Missense_Mutation p.P50L 0.33 deleterious(0) probably_damaging(0.999) TCGA-C8-A26V-01 7 130417788 130417788 C T KLF14 3'UTR 0.31 TCGA-C8-A26V-01 7 139102409 139102409 G A LUC7L2 Missense_Mutation p.R378H 0.43 deleterious(0.04) unknown(0) TCGA-C8-A26V-01 7 26224267 26224267 G A NFE2L3 Missense_Mutation p.E317K 0.37 deleterious(0) possibly_damaging(0.906) TCGA-C8-A26V-01 7 5415756 5415756 G T TNRC18 Nonsense_Mutation p.S903* 0.35 TCGA-C8-A26V-01 7 8153625 8153625 A G ICA1 Silent p.A460A 0.33 TCGA-C8-A26V-01 8 101961020 101961020 C G YWHAZ Missense_Mutation p.G33A 0.40 deleterious_low_confidence(0.03) benign(0.345) TCGA-C8-A26V-01 8 110984663 110984663 C A KCNV1 Missense_Mutation p.R272I 0.46 deleterious(0) probably_damaging(0.967) TCGA-C8-A26V-01 8 143994845 143994845 G A CYP11B2 Missense_Mutation p.T326M 0.25 deleterious(0.04) possibly_damaging(0.805) TCGA-C8-A26V-01 8 37734696 37734696 G A RAB11FIP1 Missense_Mutation p.R249C 0.40 deleterious(0) probably_damaging(0.93) TCGA-C8-A26V-01 9 66465778 66465778 T C RP11-262H14.1 RNA 0.27 TCGA-C8-A26V-01 9 84608184 84608184 G A SPATA31D1 Silent p.A933A 0.45 TCGA-C8-A26V-01 9 99271985 99271985 C G CDC14B Missense_Mutation p.R477T 0.27 tolerated(0.1) probably_damaging(0.977) TCGA-C8-A26V-01 X 108635297 108635297 A T GUCY2F Missense_Mutation p.V875D 0.40 deleterious(0) possibly_damaging(0.81) TCGA-C8-A26V-01 X 109963075 109963075 G A CHRDL1 Missense_Mutation p.R177W 0.50 deleterious(0.02) possibly_damaging(0.536) TCGA-C8-A26V-01 X 111078166 111078166 A G TRPC5 Missense_Mutation p.S627P 0.20 deleterious(0) probably_damaging(0.987) TCGA-C8-A26V-01 X 119077238 119077238 C T NKAP Missense_Mutation p.D111N 0.37 tolerated(0.12) probably_damaging(0.993) TCGA-C8-A26V-01 X 135961212 135961212 T C RBMX Silent p.A60A 0.43 TCGA-C8-A26V-01 X 139037899 139037899 A G CXorf66 3'UTR 0.31 TCGA-C8-A26V-01 X 140994861 140994861 C G MAGEC1 Missense_Mutation p.D557E 0.32 deleterious_low_confidence(0) benign(0.417) TCGA-C8-A26V-01 X 149905753 149905753 G C MTMR1 Missense_Mutation p.E428Q 0.26 deleterious(0.01) benign(0.239) TCGA-C8-A26V-01 X 48463345 48463345 C T WDR13 Silent p.F461F 0.41 TCGA-C8-A26W-01 10 126655208 126655208 C T ZRANB1 Missense_Mutation p.S287L 0.03 deleterious(0.02) possibly_damaging(0.845) TCGA-C8-A26W-01 10 81838549 81838549 A G TMEM254 Intron 0.08 TCGA-C8-A26W-01 10 97684545 97684545 G A C10orf131 Missense_Mutation p.G54S 0.08 tolerated(0.18) benign(0.032) TCGA-C8-A26W-01 11 12245016 12245016 C T MICAL2 Missense_Mutation p.S503L 0.27 tolerated(0.2) possibly_damaging(0.716) TCGA-C8-A26W-01 11 20676303 20676303 C G SLC6A5 Missense_Mutation p.F761L 0.31 tolerated(0.06) benign(0.032) TCGA-C8-A26W-01 11 47199352 47199352 G A PACSIN3 3'UTR 0.50 TCGA-C8-A26W-01 11 62505801 62505801 C T TTC9C Missense_Mutation p.L155F 0.10 deleterious(0) probably_damaging(0.928) TCGA-C8-A26W-01 11 6417361 6417361 G A APBB1 Missense_Mutation p.A584V 0.33 deleterious(0) probably_damaging(0.997) TCGA-C8-A26W-01 11 95520814 95520814 C T FAM76B Missense_Mutation p.A61T 0.49 tolerated(0.1) possibly_damaging(0.525) TCGA-C8-A26W-01 12 39161456 39161456 G A CPNE8 Nonsense_Mutation p.R186* 0.45 TCGA-C8-A26W-01 12 94975411 94975411 C G TMCC3 Missense_Mutation p.E328Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-C8-A26W-01 13 20717290 20717290 G A GJA3 Silent p.G46G 0.43 TCGA-C8-A26W-01 14 20216391 20216391 G A OR4Q3 Missense_Mutation p.D269N 0.20 deleterious(0.02) probably_damaging(0.962) TCGA-C8-A26W-01 15 28387403 28387403 G C HERC2 Missense_Mutation p.P3894R 0.33 possibly_damaging(0.776) TCGA-C8-A26W-01 16 27556779 27556779 T A GTF3C1 Missense_Mutation p.D96V 0.22 deleterious(0) possibly_damaging(0.886) TCGA-C8-A26W-01 16 30975564 30975564 C T SETD1A Silent p.F263F 0.47 TCGA-C8-A26W-01 16 32890960 32890960 C A SLC6A10P RNA 0.05 TCGA-C8-A26W-01 16 61935083 61935083 C A CDH8 Missense_Mutation p.G183C 0.33 deleterious(0) probably_damaging(0.987) TCGA-C8-A26W-01 17 27948283 27948283 C - CORO6 Frame_Shift_Del p.A53Lfs*103 0.27 TCGA-C8-A26W-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.44 deleterious(0) probably_damaging(0.993) TCGA-C8-A26W-01 18 23619391 23619391 G C SS18 Missense_Mutation p.Q213E 0.43 deleterious_low_confidence(0.05) probably_damaging(0.949) TCGA-C8-A26W-01 19 36164378 36164378 G C UPK1A Silent p.L133L 0.33 TCGA-C8-A26W-01 19 41627364 41627364 C T CYP2F1 Silent p.G162G 0.19 TCGA-C8-A26W-01 19 43864435 43864435 G A CD177 3'UTR 0.21 TCGA-C8-A26W-01 19 51961352 51961352 T C SIGLEC8 Missense_Mutation p.Q97R 0.24 tolerated(0.26) benign(0.021) TCGA-C8-A26W-01 19 55148052 55148052 C A LILRB1 Missense_Mutation p.F587L 0.21 tolerated(1) benign(0.001) TCGA-C8-A26W-01 1 111215690 111215690 A C KCNA3 3'UTR 0.33 TCGA-C8-A26W-01 1 154995617 154995617 G A DCST2 Missense_Mutation p.S694L 0.47 tolerated(0.2) benign(0.001) TCGA-C8-A26W-01 1 155291188 155291188 G T RUSC1 Intron 0.15 TCGA-C8-A26W-01 1 182569504 182569504 G A RGS16 Missense_Mutation p.R178W 0.35 deleterious(0.03) probably_damaging(0.946) TCGA-C8-A26W-01 1 89630428 89630428 C T GBP7 Missense_Mutation p.G102S 0.21 deleterious(0) probably_damaging(0.933) TCGA-C8-A26W-01 20 30409483 30409483 G A MYLK2 Missense_Mutation p.E239K 0.38 tolerated(0.13) possibly_damaging(0.797) TCGA-C8-A26W-01 20 31967344 31967344 G A CDK5RAP1 Silent p.L344L 0.31 TCGA-C8-A26W-01 20 50051765 50051765 C G NFATC2 Missense_Mutation p.K664N 0.32 deleterious(0) probably_damaging(0.999) TCGA-C8-A26W-01 21 31661662 31661662 G A KRTAP25-1 Silent p.F49F 0.44 TCGA-C8-A26W-01 22 40802535 40802535 G C SGSM3 Missense_Mutation p.G352R 0.33 tolerated(0.33) benign(0.001) TCGA-C8-A26W-01 2 121047205 121047205 G A RALB Missense_Mutation p.V125I 0.06 tolerated(0.05) benign(0.042) TCGA-C8-A26W-01 2 130897469 130897469 C T CCDC74B Silent p.K334K 0.26 TCGA-C8-A26W-01 2 168107692 168107692 A G XIRP2 Missense_Mutation p.K3264E 0.32 benign(0.082) TCGA-C8-A26W-01 2 172967226 172967226 G A DLX2 Missense_Mutation p.S14L 0.22 deleterious(0) benign(0.058) TCGA-C8-A26W-01 2 179426582 179426582 C T TTN Missense_Mutation p.E28093K 0.11 TCGA-C8-A26W-01 2 187626830 187626830 C G FAM171B Silent p.P587P 0.42 TCGA-C8-A26W-01 2 21226147 21226147 A G APOB Silent p.D4049D 0.35 TCGA-C8-A26W-01 2 24507656 24507656 G C ITSN2 Silent p.L640L 0.04 TCGA-C8-A26W-01 2 74783592 74783592 G C DOK1 Missense_Mutation p.R266T 0.33 tolerated(0.2) benign(0.034) TCGA-C8-A26W-01 3 120067641 120067641 C G LRRC58 Silent p.L150L 0.19 TCGA-C8-A26W-01 3 139258365 139258365 C T RBP1 Missense_Mutation p.D66N 0.38 tolerated(0.4) benign(0.383) TCGA-C8-A26W-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.58 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A26W-01 3 183677527 183677527 C T ABCC5 Missense_Mutation p.E826K 0.26 tolerated(0.71) benign(0.011) TCGA-C8-A26W-01 3 47610685 47610685 T A CSPG5 Missense_Mutation p.D472V 0.43 deleterious(0.03) probably_damaging(1) TCGA-C8-A26W-01 4 100532382 100532382 A G MTTP Missense_Mutation p.T618A 0.30 tolerated(0.08) possibly_damaging(0.507) TCGA-C8-A26W-01 4 20490503 20490503 C T SLIT2 Missense_Mutation p.R225C 0.32 deleterious(0) possibly_damaging(0.891) TCGA-C8-A26W-01 5 677909 677909 C T TPPP Silent p.R89R 0.15 TCGA-C8-A26W-01 6 117128340 117128340 C G GPRC6A Silent p.L176L 0.06 TCGA-C8-A26W-01 6 132029589 132029589 C T CTAGE9 3'UTR 0.08 TCGA-C8-A26W-01 6 144183272 144183272 G A LTV1 Missense_Mutation p.E319K 0.33 tolerated(0.48) benign(0.098) TCGA-C8-A26W-01 6 64431555 64431555 A G EYS Missense_Mutation p.V2791A 0.32 tolerated(0.88) benign(0.107) TCGA-C8-A26W-01 6 6589046 6589046 T G LY86 Missense_Mutation p.W27G 0.24 deleterious(0) probably_damaging(0.997) TCGA-C8-A26W-01 7 100276323 100276323 C T GNB2 Missense_Mutation p.L308F 0.33 deleterious(0.01) probably_damaging(0.98) TCGA-C8-A26W-01 7 41729410 41729410 G C INHBA Missense_Mutation p.I373M 0.28 deleterious(0) probably_damaging(0.992) TCGA-C8-A26W-01 7 41729420 41729420 G C INHBA Nonsense_Mutation p.S370* 0.28 TCGA-C8-A26W-01 7 81334803 81334803 C T HGF Missense_Mutation p.G638E 0.27 deleterious(0.03) probably_damaging(0.993) TCGA-C8-A26W-01 8 124442245 124442245 C G WDYHV1 Missense_Mutation p.A69G 0.26 tolerated(0.06) benign(0.418) TCGA-C8-A26W-01 9 121971044 121971044 G A BRINP1 Silent p.L366L 0.32 TCGA-C8-A26W-01 9 20990142 20990142 G A FOCAD Silent p.L1675L 0.22 TCGA-C8-A26W-01 9 34996381 34996381 T C DNAJB5 Missense_Mutation p.F225L 0.11 tolerated(0.07) benign(0.061) TCGA-C8-A26W-01 9 35660615 35660615 G A CCDC107 Silent p.L127L 0.42 TCGA-C8-A26W-01 X 103216639 103216639 C T TMSB15B 5'Flank 0.19 TCGA-C8-A26W-01 X 118221704 118221704 C T KIAA1210 Silent p.K1163K 0.30 TCGA-C8-A26W-01 X 152612794 152612794 G A ZNF275 Silent p.S217S 0.06 TCGA-C8-A26X-01 10 104111081 104111081 G A GBF1 Missense_Mutation p.V122M 0.34 tolerated(0.22) benign(0.376) TCGA-C8-A26X-01 10 95994013 95994013 G A PLCE1 Missense_Mutation p.A720T 0.11 tolerated(0.65) benign(0.034) TCGA-C8-A26X-01 11 11374371 11374371 T G CSNK2A3 Missense_Mutation p.D99A 0.17 tolerated(0.13) benign(0.003) TCGA-C8-A26X-01 11 124294480 124294480 A T OR8B4 Nonsense_Mutation p.C96* 0.09 TCGA-C8-A26X-01 11 68380660 68380660 G T PPP6R3 3'UTR 0.29 TCGA-C8-A26X-01 11 85396110 85396110 C A CCDC89 Missense_Mutation p.S355I 0.21 deleterious(0) possibly_damaging(0.748) TCGA-C8-A26X-01 12 10213790 10213790 G A CLEC9A Silent p.L79L 0.29 TCGA-C8-A26X-01 12 103700001 103700001 G T C12orf42 Missense_Mutation p.R128S 0.19 tolerated(0.52) benign(0.007) TCGA-C8-A26X-01 12 124191586 124191586 G A TCTN2 Silent p.P650P 0.07 TCGA-C8-A26X-01 12 124904522 124904522 C T NCOR2 Missense_Mutation p.R488Q 0.22 unknown(0) TCGA-C8-A26X-01 12 49427194 49427194 G C KMT2D Missense_Mutation p.T3765R 0.21 benign(0.11) TCGA-C8-A26X-01 12 52779276 52779276 G A KRT84 Missense_Mutation p.R32W 0.14 tolerated(0.17) benign(0.353) TCGA-C8-A26X-01 13 113887613 113887613 G T CUL4A Missense_Mutation p.S212I 0.16 deleterious(0.03) benign(0.445) TCGA-C8-A26X-01 13 49781652 49781652 A G FNDC3A 3'UTR 0.40 TCGA-C8-A26X-01 14 102028653 102028653 G A DIO3 Missense_Mutation p.G274S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A26X-01 14 23548943 23548943 C A ACIN1 Missense_Mutation p.R592I 0.20 probably_damaging(0.993) TCGA-C8-A26X-01 14 93761249 93761249 G A BTBD7 Silent p.C39C 0.15 TCGA-C8-A26X-01 15 22869955 22869956 - G TUBGCP5 Frame_Shift_Ins p.A961Gfs*26 0.12 TCGA-C8-A26X-01 15 42052689 42052689 C A MGA Missense_Mutation p.H2454N 0.07 tolerated(1) possibly_damaging(0.813) TCGA-C8-A26X-01 15 55742419 55742419 C A DYX1C1 Splice_Site p.X261_splice 0.12 TCGA-C8-A26X-01 16 30749899 30749899 A T SRCAP Silent p.G2846G 0.35 TCGA-C8-A26X-01 16 31273026 31273026 T C ITGAM Silent p.C14C 0.07 TCGA-C8-A26X-01 16 90048301 90048301 C A AFG3L1P RNA 0.27 TCGA-C8-A26X-01 16 929694 929694 G A LMF1 Missense_Mutation p.S258L 0.32 tolerated(0.25) benign(0.072) TCGA-C8-A26X-01 17 73832707 73832707 G A UNC13D Missense_Mutation p.S415F 0.24 deleterious(0.04) possibly_damaging(0.541) TCGA-C8-A26X-01 17 74288110 74288110 C G QRICH2 Missense_Mutation p.G734R 0.10 deleterious(0.04) benign(0.089) TCGA-C8-A26X-01 17 80708303 80708303 C T FN3K Missense_Mutation p.P201L 0.17 deleterious(0) possibly_damaging(0.848) TCGA-C8-A26X-01 19 21132063 21132063 A G ZNF85 Missense_Mutation p.H248R 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-C8-A26X-01 19 36884768 36884768 A G ZFP82 Silent p.T158T 0.09 TCGA-C8-A26X-01 19 37854220 37854220 G A HKR1 Missense_Mutation p.R508Q 0.16 tolerated(1) benign(0.009) TCGA-C8-A26X-01 19 58290902 58290902 G A ZNF586 Missense_Mutation p.R316K 0.07 tolerated(0.31) benign(0.062) TCGA-C8-A26X-01 19 58500009 58500009 C T ZNF606 Silent p.L86L 0.10 TCGA-C8-A26X-01 1 112321061 112321061 G C KCND3 Missense_Mutation p.I505M 0.20 tolerated_low_confidence(0.14) benign(0.016) TCGA-C8-A26X-01 1 150940892 150940892 G A CERS2 Silent p.T90T 0.10 TCGA-C8-A26X-01 1 158390347 158390347 A G OR10K2 Missense_Mutation p.F104L 0.10 tolerated(0.07) probably_damaging(0.995) TCGA-C8-A26X-01 1 161821536 161821537 - A ATF6 Frame_Shift_Ins p.A450Sfs*7 0.31 TCGA-C8-A26X-01 1 162774090 162774090 C T HSD17B7 Missense_Mutation p.P261S 0.09 deleterious(0.03) probably_damaging(0.931) TCGA-C8-A26X-01 1 197641237 197641240 TGTC - DENND1B Frame_Shift_Del p.D75Lfs*12 0.21 TCGA-C8-A26X-01 1 232568162 232568162 G C SIPA1L2 Missense_Mutation p.L1363V 0.05 tolerated(0.56) possibly_damaging(0.624) TCGA-C8-A26X-01 1 70716188 70716188 T C SRSF11 Splice_Site p.X419_splice 0.15 TCGA-C8-A26X-01 1 9784395 9784395 G A PIK3CD Missense_Mutation p.R927H 0.22 deleterious(0) probably_damaging(1) TCGA-C8-A26X-01 20 40053975 40053975 G C CHD6 Missense_Mutation p.R1397G 0.09 deleterious(0) probably_damaging(1) TCGA-C8-A26X-01 20 58448924 58448924 C T SYCP2 Missense_Mutation p.R1181Q 0.17 tolerated(0.81) benign(0.002) TCGA-C8-A26X-01 22 26164533 26164533 G A MYO18B Missense_Mutation p.R217Q 0.29 tolerated_low_confidence(0.95) benign(0.011) TCGA-C8-A26X-01 22 30700525 30700525 T G TBC1D10A Missense_Mutation p.K109Q 0.12 tolerated(0.25) benign(0.046) TCGA-C8-A26X-01 22 38013003 38013003 C T GGA1 Missense_Mutation p.T68M 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-C8-A26X-01 22 38206091 38206091 T C GCAT Missense_Mutation p.I111T 0.23 deleterious(0.02) probably_damaging(0.93) TCGA-C8-A26X-01 2 163072473 163072473 G A FAP Silent p.I267I 0.18 TCGA-C8-A26X-01 2 179440959 179440959 C G TTN Missense_Mutation p.Q23300H 0.23 TCGA-C8-A26X-01 2 179587200 179587200 G T TTN Silent p.L7438L 0.29 TCGA-C8-A26X-01 2 19553422 19553422 C A OSR1 Missense_Mutation p.A49S 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.595) TCGA-C8-A26X-01 2 61149040 61149040 A G REL Silent p.S410S 0.16 TCGA-C8-A26X-01 3 110841072 110841072 T G PVRL3 Missense_Mutation p.S302A 0.11 deleterious(0.01) benign(0.157) TCGA-C8-A26X-01 3 121206799 121206799 G A POLQ Missense_Mutation p.S1660L 0.11 tolerated(0.7) benign(0) TCGA-C8-A26X-01 3 143185996 143185996 C T SLC9A9 Missense_Mutation p.R451Q 0.07 deleterious(0.04) benign(0.069) TCGA-C8-A26X-01 3 178916922 178916930 ACCAGTAGG - PIK3CA In_Frame_Del p.E103_G106delinsD 0.50 TCGA-C8-A26X-01 3 186507018 186507018 C T EIF4A2 Missense_Mutation p.T395I 0.11 deleterious(0.05) benign(0.002) TCGA-C8-A26X-01 3 38592337 38592337 C T SCN5A Missense_Mutation p.M1842I 0.12 tolerated(0.13) benign(0.01) TCGA-C8-A26X-01 4 139964462 139964462 C T CCRN4L Missense_Mutation p.P142L 0.29 deleterious(0.03) benign(0.045) TCGA-C8-A26X-01 4 144918769 144918769 A T GYPB Missense_Mutation p.L65H 0.10 deleterious(0) probably_damaging(0.98) TCGA-C8-A26X-01 4 16040615 16040615 C - PROM1 Frame_Shift_Del p.R77Kfs*20 0.16 TCGA-C8-A26X-01 4 187004711 187004711 C T TLR3 Missense_Mutation p.S624F 0.16 deleterious(0.02) possibly_damaging(0.733) TCGA-C8-A26X-01 4 56316278 56316279 GT - CLOCK Frame_Shift_Del p.T443Gfs*28 0.23 TCGA-C8-A26X-01 5 158588473 158588473 T G RNF145 Missense_Mutation p.E506A 0.18 deleterious(0) probably_damaging(1) TCGA-C8-A26X-01 5 68661327 68661327 C A TAF9 Missense_Mutation p.D80Y 0.22 deleterious(0) possibly_damaging(0.685) TCGA-C8-A26X-01 5 78426943 78426943 C T BHMT 3'UTR 0.23 TCGA-C8-A26X-01 5 80088607 80088607 A G MSH3 Missense_Mutation p.I867V 0.32 tolerated(0.43) benign(0.402) TCGA-C8-A26X-01 6 36355343 36355343 C A ETV7 5'UTR 0.36 TCGA-C8-A26X-01 6 46135740 46135740 T A ENPP5 Missense_Mutation p.N87I 0.26 deleterious(0) possibly_damaging(0.685) TCGA-C8-A26X-01 6 74227785 74227786 - A EEF1A1 Frame_Shift_Ins p.C411Lfs*3 0.28 TCGA-C8-A26X-01 7 100253163 100253163 C - ACTL6B Frame_Shift_Del p.G50Afs*40 0.16 TCGA-C8-A26X-01 7 12423212 12423212 C T VWDE Missense_Mutation p.R164Q 0.08 tolerated(0.24) benign(0.001) TCGA-C8-A26X-01 7 130368439 130368439 C G TSGA13 Missense_Mutation p.S32T 0.21 tolerated(0.45) benign(0.006) TCGA-C8-A26X-01 7 48319155 48319155 C T ABCA13 Silent p.D2788D 0.09 TCGA-C8-A26X-01 8 48801132 48801132 C A PRKDC Missense_Mutation p.A1453S 0.21 benign(0.396) TCGA-C8-A26X-01 8 68346411 68346411 C T CPA6 Silent p.P301P 0.12 TCGA-C8-A26X-01 9 137801654 137801654 C T FCN1 Missense_Mutation p.R324Q 0.10 deleterious(0.02) probably_damaging(0.91) TCGA-C8-A26X-01 9 71687530 71687530 G A FXN Missense_Mutation p.G162E 0.09 deleterious(0.02) possibly_damaging(0.855) TCGA-C8-A26X-01 9 84607107 84607107 T G SPATA31D1 Missense_Mutation p.H574Q 0.07 tolerated(0.26) possibly_damaging(0.705) TCGA-C8-A26X-01 X 117732028 117732028 A - DOCK11 Frame_Shift_Del p.K808Sfs*4 0.11 TCGA-C8-A26X-01 X 153174974 153174974 C A ARHGAP4 Silent p.V850V 0.31 TCGA-C8-A26X-01 X 49034432 49034432 G A PRICKLE3 Missense_Mutation p.R289C 0.33 deleterious(0) probably_damaging(0.996) TCGA-C8-A26X-01 X 73751293 73751293 C T SLC16A2 Nonsense_Mutation p.Q509* 0.21 TCGA-C8-A26X-01 X 84362417 84362417 C T SATL1 Missense_Mutation p.G520S 0.09 tolerated(0.38) probably_damaging(0.99) TCGA-C8-A26Y-01 10 114918464 114918464 C T TCF7L2 Intron 0.43 TCGA-C8-A26Y-01 10 124800072 124800072 G T ACADSB Missense_Mutation p.D132Y 0.33 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 10 124800125 124800125 G A ACADSB Silent p.L149L 0.31 TCGA-C8-A26Y-01 10 127461192 127461192 G C MMP21 Missense_Mutation p.I275M 0.53 deleterious(0) probably_damaging(0.964) TCGA-C8-A26Y-01 10 134660491 134660491 T A TTC40 Missense_Mutation p.E2071V 0.50 deleterious(0) probably_damaging(0.976) TCGA-C8-A26Y-01 10 18903468 18903468 C G NSUN6 Missense_Mutation p.D166H 0.50 deleterious(0.05) benign(0.043) TCGA-C8-A26Y-01 10 32974906 32974906 G A C10ORF68 Missense_Mutation p.E18K 0.58 tolerated(0.16) probably_damaging(0.953) TCGA-C8-A26Y-01 10 50966591 50966591 C T OGDHL Silent p.A16A 0.60 TCGA-C8-A26Y-01 10 54074293 54074293 G A DKK1 Silent p.L33L 0.40 TCGA-C8-A26Y-01 10 6146916 6146916 C G RBM17 Missense_Mutation p.S88C 0.55 tolerated(0.18) possibly_damaging(0.781) TCGA-C8-A26Y-01 10 70243205 70243205 A G SLC25A16 Missense_Mutation p.F328S 0.15 tolerated(0.17) benign(0.253) TCGA-C8-A26Y-01 10 87628764 87628764 G A GRID1 Intron 0.37 TCGA-C8-A26Y-01 10 89312227 89312227 G A MINPP1 Missense_Mutation p.E486K 0.64 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-C8-A26Y-01 10 89720709 89720709 C G PTEN Nonsense_Mutation p.S287* 0.61 TCGA-C8-A26Y-01 10 95079720 95079720 C G MYOF Missense_Mutation p.R1836T 0.54 deleterious(0) probably_damaging(0.981) TCGA-C8-A26Y-01 10 95372794 95372794 G C PDE6C Silent p.R104R 0.42 TCGA-C8-A26Y-01 10 96974700 96974700 G T C10orf129 Missense_Mutation p.D363Y 0.47 deleterious(0.05) benign(0.118) TCGA-C8-A26Y-01 11 107288973 107288973 C T CWF19L2 Missense_Mutation p.E492K 0.36 deleterious(0) possibly_damaging(0.723) TCGA-C8-A26Y-01 11 107299925 107299925 C G CWF19L2 Missense_Mutation p.E345Q 0.44 tolerated(0.15) benign(0.015) TCGA-C8-A26Y-01 11 117307850 117307850 C T DSCAML1 Missense_Mutation p.D1630N 0.72 tolerated(0.86) benign(0.008) TCGA-C8-A26Y-01 11 124440642 124440642 G C OR8A1 Silent p.T226T 0.51 TCGA-C8-A26Y-01 11 124739879 124739879 C G ROBO3 Silent p.L227L 0.47 TCGA-C8-A26Y-01 11 17409584 17409584 C G KCNJ11 Missense_Mutation p.E19Q 0.62 tolerated(0.14) probably_damaging(0.994) TCGA-C8-A26Y-01 11 19256378 19256378 C T E2F8 Missense_Mutation p.E227K 0.40 tolerated(0.06) probably_damaging(0.993) TCGA-C8-A26Y-01 11 19256391 19256391 C T E2F8 Silent p.K222K 0.39 TCGA-C8-A26Y-01 11 2432929 2432929 C T TRPM5 Missense_Mutation p.R848Q 0.29 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 11 26463504 26463504 C T ANO3 Missense_Mutation p.S29L 0.48 deleterious_low_confidence(0.01) benign(0.049) TCGA-C8-A26Y-01 11 284398 284398 C T NLRP6 Silent p.V790V 0.40 TCGA-C8-A26Y-01 11 32954474 32954474 C G QSER1 Missense_Mutation p.S428C 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-C8-A26Y-01 11 45924603 45924603 G A MAPK8IP1 Missense_Mutation p.E429K 0.23 tolerated(0.09) benign(0.316) TCGA-C8-A26Y-01 11 48166619 48166619 G A PTPRJ Missense_Mutation p.E952K 0.45 tolerated(0.14) benign(0.022) TCGA-C8-A26Y-01 11 55418639 55418639 A G OR4S2 Missense_Mutation p.D87G 0.43 tolerated(0.09) benign(0.009) TCGA-C8-A26Y-01 11 56237718 56237718 C G OR5M3 Missense_Mutation p.D86H 0.42 deleterious(0.03) benign(0.149) TCGA-C8-A26Y-01 11 56380545 56380545 A C OR5M1 Missense_Mutation p.V145G 0.21 deleterious(0) probably_damaging(0.976) TCGA-C8-A26Y-01 11 5701445 5701445 G A TRIM5 5'UTR 0.64 TCGA-C8-A26Y-01 11 57971339 57971339 G C OR1S2 Missense_Mutation p.I105M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A26Y-01 11 59211307 59211307 T C OR5A1 Silent p.G222G 0.15 TCGA-C8-A26Y-01 11 60637153 60637153 C T ZP1 Silent p.F154F 0.49 TCGA-C8-A26Y-01 11 62367698 62367699 AG - MTA2 Frame_Shift_Del p.C44Sfs*9 0.27 TCGA-C8-A26Y-01 11 65293615 65293615 C G SCYL1 Silent p.V132V 0.24 TCGA-C8-A26Y-01 11 70007266 70007266 G T ANO1 Splice_Site p.X527_splice 0.55 TCGA-C8-A26Y-01 11 71724696 71724696 C T NUMA1 Missense_Mutation p.E1285K 0.55 possibly_damaging(0.45) TCGA-C8-A26Y-01 11 71940780 71940780 C G INPPL1 Nonsense_Mutation p.S276* 0.40 TCGA-C8-A26Y-01 11 7647043 7647043 G T PPFIBP2 Silent p.L249L 0.48 TCGA-C8-A26Y-01 11 85365293 85365293 G T TMEM126A Missense_Mutation p.L91F 0.57 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 12 100955671 100955671 G A NR1H4 Missense_Mutation p.D373N 0.14 deleterious(0.01) benign(0.036) TCGA-C8-A26Y-01 12 10313515 10313515 G T OLR1 Missense_Mutation p.P145Q 0.26 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 12 104487278 104487278 T A HCFC2 Missense_Mutation p.S467T 0.27 tolerated(0.13) benign(0.02) TCGA-C8-A26Y-01 12 105538125 105538125 C G KIAA1033 Missense_Mutation p.H691D 0.17 deleterious(0.01) benign(0.086) TCGA-C8-A26Y-01 12 107371776 107371776 G A MTERFD3 Silent p.F239F 0.23 TCGA-C8-A26Y-01 12 108589796 108589796 G A WSCD2 Missense_Mutation p.E63K 0.28 tolerated(0.19) benign(0.086) TCGA-C8-A26Y-01 12 109526219 109526219 C G ALKBH2 Missense_Mutation p.R193T 0.31 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 12 109530324 109530324 C G ALKBH2 Missense_Mutation p.E90Q 0.23 tolerated(0.14) benign(0.428) TCGA-C8-A26Y-01 12 109530691 109530691 C G ALKBH2 5'UTR 0.29 TCGA-C8-A26Y-01 12 110230226 110230226 G A TRPV4 Silent p.F611F 0.22 TCGA-C8-A26Y-01 12 110957611 110957611 G C RAD9B Missense_Mutation p.L260F 0.17 tolerated(1) probably_damaging(0.979) TCGA-C8-A26Y-01 12 11139102 11139102 G A TAS2R50 Missense_Mutation p.H120Y 0.13 tolerated(0.58) benign(0.008) TCGA-C8-A26Y-01 12 12022499 12022499 G T ETV6 Missense_Mutation p.R202L 0.15 tolerated(0.07) benign(0.002) TCGA-C8-A26Y-01 12 122861994 122861994 G A CLIP1 Missense_Mutation p.S200L 0.22 deleterious(0) probably_damaging(0.979) TCGA-C8-A26Y-01 12 123984049 123984051 CTT - RILPL1 In_Frame_Del p.K165del 0.13 TCGA-C8-A26Y-01 12 12967130 12967130 G C DDX47 Missense_Mutation p.Q51H 0.13 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 12 130839094 130839094 G C PIWIL1 Missense_Mutation p.E353Q 0.32 tolerated(0.39) benign(0.047) TCGA-C8-A26Y-01 12 132516515 132516515 C A EP400 Missense_Mutation p.F1924L 0.27 unknown(0) TCGA-C8-A26Y-01 12 133198141 133198141 C T P2RX2 Silent p.L359L 0.23 TCGA-C8-A26Y-01 12 14019058 14019058 G A GRIN2B Nonsense_Mutation p.Q29* 0.16 TCGA-C8-A26Y-01 12 15822677 15822677 G C EPS8 Missense_Mutation p.A96G 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A26Y-01 12 23728679 23728679 G A SOX5 Silent p.L420L 0.15 TCGA-C8-A26Y-01 12 29523098 29523098 T G ERGIC2 Missense_Mutation p.Y55S 0.22 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 12 29523145 29523145 T G ERGIC2 Silent p.I39I 0.20 TCGA-C8-A26Y-01 12 29644106 29644106 G A OVCH1 Silent p.I158I 0.21 TCGA-C8-A26Y-01 12 31256307 31256307 G T DDX11 Nonsense_Mutation p.E837* 0.31 TCGA-C8-A26Y-01 12 31545556 31545556 C A DENND5B Nonsense_Mutation p.E1111* 0.17 TCGA-C8-A26Y-01 12 40041621 40041621 C A C12orf40 Missense_Mutation p.L138I 0.15 tolerated(0.08) benign(0.018) TCGA-C8-A26Y-01 12 42792671 42792671 C A PPHLN1 Missense_Mutation p.P262T 0.27 deleterious(0) probably_damaging(0.938) TCGA-C8-A26Y-01 12 44693420 44693420 C T TMEM117 Silent p.I222I 0.39 TCGA-C8-A26Y-01 12 45686634 45686634 G A ANO6 Intron 0.41 TCGA-C8-A26Y-01 12 49088068 49088068 A G CCNT1 Missense_Mutation p.V310A 0.33 tolerated(0.53) benign(0.114) TCGA-C8-A26Y-01 12 49412551 49412551 C T PRKAG1 5'UTR 0.21 TCGA-C8-A26Y-01 12 49440498 49440498 C T KMT2D Missense_Mutation p.D1438N 0.25 probably_damaging(0.999) TCGA-C8-A26Y-01 12 49579225 49579225 G A TUBA1A Silent p.R308R 0.06 TCGA-C8-A26Y-01 12 50264216 50264216 G A FAIM2 3'UTR 0.31 TCGA-C8-A26Y-01 12 51512435 51512435 G C TFCP2 Silent p.L81L 0.15 TCGA-C8-A26Y-01 12 52093557 52093557 G C SCN8A Missense_Mutation p.E304Q 0.23 tolerated(0.24) benign(0.41) TCGA-C8-A26Y-01 12 521048 521048 C T CCDC77 Silent p.L58L 0.24 TCGA-C8-A26Y-01 12 52646209 52646209 G T KRT7 3'Flank 0.47 TCGA-C8-A26Y-01 12 54063126 54063126 C T ATP5G2 Splice_Site p.X97_splice 0.20 TCGA-C8-A26Y-01 12 55615100 55615100 G A OR10A7 Missense_Mutation p.G98S 0.20 deleterious(0.02) benign(0.054) TCGA-C8-A26Y-01 12 55820488 55820488 T A OR6C76 Missense_Mutation p.L151M 0.22 tolerated_low_confidence(0.1) probably_damaging(0.988) TCGA-C8-A26Y-01 12 56351203 56351203 G C PMEL Missense_Mutation p.A295G 0.13 deleterious(0) probably_damaging(0.929) TCGA-C8-A26Y-01 12 56563682 56563682 C A SMARCC2 Missense_Mutation p.G778V 0.20 tolerated(0.07) probably_damaging(0.953) TCGA-C8-A26Y-01 12 56567524 56567524 C T SMARCC2 Missense_Mutation p.D536N 0.21 deleterious(0) possibly_damaging(0.539) TCGA-C8-A26Y-01 12 57604145 57604145 C T LRP1 Silent p.L4212L 0.29 TCGA-C8-A26Y-01 12 58204223 58204223 G T AVIL Missense_Mutation p.Q224K 0.21 tolerated(0.65) benign(0.004) TCGA-C8-A26Y-01 12 59271206 59271206 C A LRIG3 Nonsense_Mutation p.E838* 0.20 TCGA-C8-A26Y-01 12 66703995 66703995 G A HELB Nonsense_Mutation p.W429* 0.24 TCGA-C8-A26Y-01 12 6782582 6782582 G A ZNF384 Silent p.F237F 0.36 TCGA-C8-A26Y-01 12 7301602 7301602 G T CLSTN3 Nonsense_Mutation p.E628* 0.24 TCGA-C8-A26Y-01 12 7527045 7527045 G C CD163L1 Missense_Mutation p.I1134M 0.25 deleterious(0) probably_damaging(0.985) TCGA-C8-A26Y-01 12 75900637 75900637 C T KRR1 Silent p.K106K 0.25 TCGA-C8-A26Y-01 12 7942195 7942195 C G NANOG 5'UTR 0.14 TCGA-C8-A26Y-01 12 80266599 80266599 A C PPP1R12A Silent p.L119L 0.30 TCGA-C8-A26Y-01 12 80717592 80717592 G C OTOGL Missense_Mutation p.E1382Q 0.38 tolerated(0.47) possibly_damaging(0.645) TCGA-C8-A26Y-01 12 82783660 82783660 G C METTL25 Missense_Mutation p.E164Q 0.33 tolerated(0.07) benign(0.209) TCGA-C8-A26Y-01 12 9004584 9004584 C A A2ML1 Missense_Mutation p.F813L 0.27 deleterious(0) probably_damaging(0.919) TCGA-C8-A26Y-01 12 9004849 9004849 C T A2ML1 Missense_Mutation p.S836L 0.21 tolerated(0.2) benign(0.009) TCGA-C8-A26Y-01 12 9006756 9006756 C G A2ML1 Missense_Mutation p.L875V 0.43 tolerated(0.1) benign(0.049) TCGA-C8-A26Y-01 12 93134665 93134665 G A PLEKHG7 Missense_Mutation p.E14K 0.22 deleterious(0.03) benign(0.201) TCGA-C8-A26Y-01 12 93221811 93221812 CT - EEA1 Frame_Shift_Del p.E427Afs*9 0.30 TCGA-C8-A26Y-01 12 94692560 94692560 G A PLXNC1 Nonsense_Mutation p.W1409* 0.25 TCGA-C8-A26Y-01 12 96374439 96374439 C T HAL Missense_Mutation p.E472K 0.25 deleterious(0) probably_damaging(0.918) TCGA-C8-A26Y-01 13 113223531 113223531 C T TUBGCP3 Missense_Mutation p.G40D 0.43 deleterious(0.01) probably_damaging(0.937) TCGA-C8-A26Y-01 13 113337727 113337727 C G C13orf35 3'UTR 0.29 TCGA-C8-A26Y-01 13 115070305 115070305 C T UPF3A Silent p.F448F 0.37 TCGA-C8-A26Y-01 13 26793747 26793747 C G RNF6 Missense_Mutation p.E14Q 0.64 tolerated(1) benign(0.019) TCGA-C8-A26Y-01 13 36245163 36245163 G C NBEA 3'UTR 0.55 TCGA-C8-A26Y-01 13 36903599 36903599 C G SPG20 Missense_Mutation p.R355T 0.50 tolerated(0.28) benign(0.003) TCGA-C8-A26Y-01 13 37625707 37625707 T G SUPT20H 5'UTR 0.50 TCGA-C8-A26Y-01 13 42733494 42733494 G A DGKH Missense_Mutation p.E239K 0.42 deleterious(0) probably_damaging(0.976) TCGA-C8-A26Y-01 13 72147097 72147097 T C DACH1 Missense_Mutation p.S394G 0.06 benign(0.017) TCGA-C8-A26Y-01 13 75876479 75876479 G A TBC1D4 Silent p.L937L 0.22 TCGA-C8-A26Y-01 13 84454773 84454773 G A SLITRK1 Silent p.F290F 0.41 TCGA-C8-A26Y-01 13 95364354 95364354 C A SOX21 5'UTR 0.27 TCGA-C8-A26Y-01 13 96212695 96212695 G C CLDN10 Missense_Mutation p.D148H 0.25 deleterious(0) probably_damaging(0.981) TCGA-C8-A26Y-01 13 97485350 97485350 G A HS6ST3 Silent p.R438R 0.29 TCGA-C8-A26Y-01 13 99093081 99093081 C T FARP1 Silent p.I929I 0.20 TCGA-C8-A26Y-01 13 99100747 99100747 G C FARP1 3'UTR 0.39 TCGA-C8-A26Y-01 14 103352554 103352554 T C TRAF3 Missense_Mutation p.V200A 0.39 tolerated(0.6) benign(0.048) TCGA-C8-A26Y-01 14 106209379 106209379 G A IGHG1 Silent p.P10P 0.24 TCGA-C8-A26Y-01 14 107113972 107113972 G T IGHV3-64 Silent p.S41S 0.17 TCGA-C8-A26Y-01 14 21465115 21465115 G C METTL17 3'UTR 0.35 TCGA-C8-A26Y-01 14 23043972 23043972 C G DAD1 3'UTR 0.45 TCGA-C8-A26Y-01 14 23504012 23504012 G T PSMB5 Missense_Mutation p.L27M 0.45 tolerated(0.16) benign(0.075) TCGA-C8-A26Y-01 14 23894032 23894032 C G MYH7 Missense_Mutation p.E875D 0.31 deleterious(0.03) possibly_damaging(0.856) TCGA-C8-A26Y-01 14 23946997 23946997 C T NGDN Intron 0.46 TCGA-C8-A26Y-01 14 31642457 31642457 C T HECTD1 Missense_Mutation p.R354K 0.45 deleterious(0.02) possibly_damaging(0.696) TCGA-C8-A26Y-01 14 33684482 33684482 C T NPAS3 Missense_Mutation p.P79S 0.27 deleterious(0) possibly_damaging(0.641) TCGA-C8-A26Y-01 14 50094744 50094744 G C DNAAF2 Missense_Mutation p.Q665E 0.41 tolerated(0.29) benign(0.001) TCGA-C8-A26Y-01 14 52534670 52534670 G C NID2 Missense_Mutation p.S147C 0.57 deleterious(0.01) possibly_damaging(0.687) TCGA-C8-A26Y-01 14 52978104 52978104 C T TXNDC16 Missense_Mutation p.E204K 0.50 tolerated(0.09) benign(0.003) TCGA-C8-A26Y-01 14 58831283 58831283 C T ARID4A Missense_Mutation p.H826Y 0.53 deleterious_low_confidence(0.01) benign(0.023) TCGA-C8-A26Y-01 14 64687251 64687251 G C SYNE2 Missense_Mutation p.E6653Q 0.45 possibly_damaging(0.897) TCGA-C8-A26Y-01 14 75130698 75130698 G A AREL1 Missense_Mutation p.S758F 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A26Y-01 14 75266088 75266088 G A YLPM1 Missense_Mutation p.R1363Q 0.53 benign(0.151) TCGA-C8-A26Y-01 14 78174215 78174215 C T ALKBH1 Missense_Mutation p.D45N 0.70 deleterious(0.02) possibly_damaging(0.74) TCGA-C8-A26Y-01 14 89085011 89085011 C G EML5 Missense_Mutation p.D1841H 0.58 deleterious(0) probably_damaging(0.997) TCGA-C8-A26Y-01 14 94849257 94849257 G A SERPINA1 Silent p.F106F 0.61 TCGA-C8-A26Y-01 14 99924822 99924822 G T SETD3 Missense_Mutation p.L157M 0.44 tolerated(0.06) probably_damaging(0.996) TCGA-C8-A26Y-01 15 100185769 100185769 A T MEF2A Missense_Mutation p.T20S 0.15 deleterious(0) possibly_damaging(0.828) TCGA-C8-A26Y-01 15 100942831 100942831 G A CERS3 3'UTR 0.18 TCGA-C8-A26Y-01 15 35044878 35044878 A G GJD2 Missense_Mutation p.F256S 0.17 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 15 40235627 40235627 G A EIF2AK4 Missense_Mutation p.E101K 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-C8-A26Y-01 15 41625187 41625187 C G NUSAP1 Missense_Mutation p.S11C 0.22 deleterious(0) probably_damaging(0.994) TCGA-C8-A26Y-01 15 42710150 42710150 C G ZNF106 Splice_Site p.X1817_splice 0.20 TCGA-C8-A26Y-01 15 43269025 43269025 T A UBR1 Missense_Mutation p.D1420V 0.34 deleterious(0) probably_damaging(0.927) TCGA-C8-A26Y-01 15 43269026 43269026 C T UBR1 Missense_Mutation p.D1420N 0.33 deleterious(0.04) possibly_damaging(0.859) TCGA-C8-A26Y-01 15 43574073 43574073 C G TGM7 Missense_Mutation p.Q440H 0.38 deleterious(0.05) possibly_damaging(0.778) TCGA-C8-A26Y-01 15 44149355 44149355 G T WDR76 Missense_Mutation p.G468V 0.34 deleterious(0) probably_damaging(0.961) TCGA-C8-A26Y-01 15 45047337 45047337 G A TRIM69 Silent p.K82K 0.43 TCGA-C8-A26Y-01 15 45353336 45353336 C T SORD Silent p.L113L 0.28 TCGA-C8-A26Y-01 15 45559965 45559965 G A SLC28A2 Silent p.K390K 0.09 TCGA-C8-A26Y-01 15 50751285 50751285 G A USP8 Missense_Mutation p.G142R 0.21 tolerated(0.15) possibly_damaging(0.454) TCGA-C8-A26Y-01 15 50905027 50905027 C T TRPM7 Splice_Site p.X591_splice 0.35 TCGA-C8-A26Y-01 15 53815460 53815460 C T WDR72 Missense_Mutation p.E1070K 0.18 deleterious(0.05) benign(0.009) TCGA-C8-A26Y-01 15 55651931 55651931 G A CCPG1 Silent p.F680F 0.17 TCGA-C8-A26Y-01 15 55727116 55727116 T C DYX1C1 Missense_Mutation p.E345G 0.36 deleterious(0) probably_damaging(0.98) TCGA-C8-A26Y-01 15 55967747 55967747 C T PRTG Missense_Mutation p.D506N 0.34 tolerated(0.07) probably_damaging(0.933) TCGA-C8-A26Y-01 15 59963389 59963389 C T BNIP2 Missense_Mutation p.D355N 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-C8-A26Y-01 15 62538175 62538175 C G AC126323.1 5'Flank 0.29 TCGA-C8-A26Y-01 15 62945510 62945510 G A TLN2 Missense_Mutation p.D172N 0.09 deleterious(0) benign(0.06) TCGA-C8-A26Y-01 15 63053955 63053955 G A TLN2 Missense_Mutation p.E1572K 0.32 tolerated(0.17) benign(0.017) TCGA-C8-A26Y-01 15 63354780 63354780 G C TPM1 Missense_Mutation p.E236D 0.23 deleterious(0.01) probably_damaging(0.918) TCGA-C8-A26Y-01 15 68466118 68466118 C T PIAS1 Missense_Mutation p.H353Y 0.22 deleterious(0) probably_damaging(0.992) TCGA-C8-A26Y-01 15 70959543 70959543 C G UACA Missense_Mutation p.K1160N 0.12 deleterious(0) possibly_damaging(0.694) TCGA-C8-A26Y-01 15 72492897 72492897 G T PKM Silent p.I469I 0.22 TCGA-C8-A26Y-01 15 72638653 72638653 C A HEXA Missense_Mutation p.Q448H 0.27 deleterious(0) probably_damaging(0.986) TCGA-C8-A26Y-01 15 72639066 72639066 C G HEXA Intron 0.16 TCGA-C8-A26Y-01 15 75980264 75980264 C T CSPG4 Missense_Mutation p.D1048N 0.50 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 15 90265345 90265345 G A WDR93 Silent p.K285K 0.23 TCGA-C8-A26Y-01 16 1278690 1278690 T A TPSB2 Missense_Mutation p.Y262F 0.11 tolerated(0.2) benign(0.439) TCGA-C8-A26Y-01 16 14026115 14026115 G T ERCC4 Nonsense_Mutation p.E359* 0.20 TCGA-C8-A26Y-01 16 14968961 14968961 A G NOMO1 Missense_Mutation p.E708G 0.17 deleterious(0.01) probably_damaging(0.919) TCGA-C8-A26Y-01 16 1544312 1544312 C A TELO2 Silent p.L10L 0.50 TCGA-C8-A26Y-01 16 2025431 2025431 G C TBL3 Missense_Mutation p.G266A 0.22 deleterious(0.01) possibly_damaging(0.664) TCGA-C8-A26Y-01 16 22358682 22358682 G A CDR2 Silent p.I323I 0.48 TCGA-C8-A26Y-01 16 23647167 23647167 C T PALB2 Missense_Mutation p.D234N 0.12 tolerated(0.14) benign(0.043) TCGA-C8-A26Y-01 16 24674019 24674019 C T AC012317.1 RNA 0.43 TCGA-C8-A26Y-01 16 2762622 2762622 C T PRSS27 Silent p.%3D 0.44 TCGA-C8-A26Y-01 16 2762726 2762726 C G PRSS27 Missense_Mutation p.Q256H 0.50 deleterious(0.02) benign(0.063) TCGA-C8-A26Y-01 16 27761291 27761291 G A KIAA0556 Missense_Mutation p.E1004K 0.62 tolerated(0.08) benign(0.137) TCGA-C8-A26Y-01 16 28123292 28123292 G C XPO6 Missense_Mutation p.I729M 0.25 tolerated(0.43) benign(0.002) TCGA-C8-A26Y-01 16 28892310 28892310 C T ATP2A1 Silent p.L98L 0.07 TCGA-C8-A26Y-01 16 28944707 28944707 G C CD19 Missense_Mutation p.D238H 0.11 deleterious(0) benign(0.265) TCGA-C8-A26Y-01 16 30081404 30081404 G A ALDOA Intron 0.70 TCGA-C8-A26Y-01 16 30409375 30409375 G A ZNF48 Silent p.P268P 0.19 TCGA-C8-A26Y-01 16 30485581 30485581 G A ITGAL Silent p.G42G 0.54 TCGA-C8-A26Y-01 16 30744708 30744708 C A SRCAP Missense_Mutation p.L2079I 0.14 benign(0.444) TCGA-C8-A26Y-01 16 30771679 30771679 C T C16orf93 Missense_Mutation p.R132H 0.20 tolerated(0.06) benign(0.233) TCGA-C8-A26Y-01 16 30778098 30778098 G C RNF40 Missense_Mutation p.E444Q 0.37 deleterious(0) probably_damaging(0.992) TCGA-C8-A26Y-01 16 31045418 31045418 G A STX4 Missense_Mutation p.E39K 0.56 deleterious(0.02) benign(0.446) TCGA-C8-A26Y-01 16 31087781 31087781 C A ZNF646 Silent p.R46R 0.12 TCGA-C8-A26Y-01 16 31341399 31341399 C G ITGAM Intron 0.29 TCGA-C8-A26Y-01 16 3651002 3651002 T C SLX4 Missense_Mutation p.S381G 0.14 tolerated(0.92) benign(0.001) TCGA-C8-A26Y-01 16 3900736 3900736 C T CREBBP Silent p.K120K 0.48 TCGA-C8-A26Y-01 16 48145388 48145388 C G ABCC12 Missense_Mutation p.G747A 0.29 tolerated(0.2) benign(0.004) TCGA-C8-A26Y-01 16 511410 511410 G T RAB11FIP3 Missense_Mutation p.D241Y 0.14 deleterious(0.05) benign(0.345) TCGA-C8-A26Y-01 16 53526408 53526408 T C AKTIP Silent p.K265K 0.21 TCGA-C8-A26Y-01 16 56601663 56601663 G T MT4 Missense_Mutation p.G11V 0.15 deleterious(0) probably_damaging(0.988) TCGA-C8-A26Y-01 16 56700792 56700792 C G MT1G Nonstop_Mutation p.*62Sext*11 0.26 TCGA-C8-A26Y-01 16 66819953 66819953 T C CCDC79 Missense_Mutation p.S181G 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-C8-A26Y-01 16 67038094 67038094 C G CES4A Silent p.V349V 0.25 TCGA-C8-A26Y-01 16 67228646 67228646 G T E2F4 Nonsense_Mutation p.E191* 0.33 TCGA-C8-A26Y-01 16 70298986 70298986 C G AARS Missense_Mutation p.G456A 0.31 tolerated(0.39) benign(0.041) TCGA-C8-A26Y-01 16 70400064 70400064 C G DDX19A Silent p.L227L 0.24 TCGA-C8-A26Y-01 16 70506491 70506491 C T FUK Silent p.F463F 0.18 TCGA-C8-A26Y-01 16 718655 718655 G A RHOT2 Splice_Site p.X60_splice 0.13 TCGA-C8-A26Y-01 16 74695104 74695104 C G RFWD3 Missense_Mutation p.E82Q 0.19 deleterious_low_confidence(0.05) possibly_damaging(0.886) TCGA-C8-A26Y-01 16 83948687 83948687 G A MLYCD Missense_Mutation p.E359K 0.16 deleterious(0) possibly_damaging(0.665) TCGA-C8-A26Y-01 16 84129220 84129220 C G MBTPS1 Missense_Mutation p.Q204H 0.17 tolerated(0.11) benign(0.396) TCGA-C8-A26Y-01 16 84213299 84213299 C A TAF1C Missense_Mutation p.D620Y 0.23 deleterious(0.02) possibly_damaging(0.61) TCGA-C8-A26Y-01 16 84623740 84623740 C A COTL1 Missense_Mutation p.D97Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 16 85715277 85715277 C T GINS2 Silent p.E72E 0.20 TCGA-C8-A26Y-01 16 89838157 89838157 C A FANCA Missense_Mutation p.D694Y 0.14 tolerated(0.06) possibly_damaging(0.861) TCGA-C8-A26Y-01 17 10539141 10539141 C G MYH3 Missense_Mutation p.E1296Q 0.52 tolerated(0.07) benign(0.214) TCGA-C8-A26Y-01 17 11511580 11511580 T G DNAH9 Silent p.T184T 0.17 TCGA-C8-A26Y-01 17 12847444 12847444 C T ARHGAP44 Silent p.S264S 0.45 TCGA-C8-A26Y-01 17 21319640 21319640 C T KCNJ12 Missense_Mutation p.P329L 0.08 deleterious(0) probably_damaging(0.98) TCGA-C8-A26Y-01 17 2235463 2235463 C T TSR1 Missense_Mutation p.R499Q 0.65 deleterious(0) probably_damaging(0.972) TCGA-C8-A26Y-01 17 2280275 2280275 C T SGSM2 Silent p.F905F 0.47 TCGA-C8-A26Y-01 17 27076323 27076323 C T TRAF4 Missense_Mutation p.P381S 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-C8-A26Y-01 17 27076377 27076377 G T TRAF4 Missense_Mutation p.A399S 0.21 tolerated(1) benign(0.005) TCGA-C8-A26Y-01 17 28960226 28960226 G C LRRC37BP1 RNA 0.08 TCGA-C8-A26Y-01 17 29221087 29221087 G T ATAD5 Missense_Mutation p.R1739I 0.36 deleterious(0.02) benign(0.418) TCGA-C8-A26Y-01 17 29226406 29226406 C A TEFM Missense_Mutation p.M288I 0.49 deleterious(0.04) probably_damaging(0.991) TCGA-C8-A26Y-01 17 32583746 32583746 A G CCL2 Missense_Mutation p.K67R 0.21 tolerated(0.22) benign(0.097) TCGA-C8-A26Y-01 17 34072538 34072538 G C GAS2L2 Missense_Mutation p.Q660E 0.24 deleterious(0.01) benign(0.343) TCGA-C8-A26Y-01 17 35609904 35609904 C T ACACA Missense_Mutation p.E629K 0.16 deleterious(0) probably_damaging(0.99) TCGA-C8-A26Y-01 17 36357253 36357253 C T RP11-1407O15.2 Missense_Mutation p.D334N 0.09 TCGA-C8-A26Y-01 17 37009953 37009953 C T RPL23 Missense_Mutation p.R4Q 0.16 tolerated(0.19) benign(0.002) TCGA-C8-A26Y-01 17 38171770 38171770 G T CSF3 Intron 0.17 TCGA-C8-A26Y-01 17 39642579 39642579 G A KRT36 3'UTR 0.35 TCGA-C8-A26Y-01 17 39959674 39959674 C G LEPREL4 Missense_Mutation p.E386Q 0.32 tolerated(0.56) benign(0.009) TCGA-C8-A26Y-01 17 40120676 40120676 C T CNP Silent p.S198S 0.23 TCGA-C8-A26Y-01 17 40838993 40838993 G A CNTNAP1 Missense_Mutation p.E325K 0.20 deleterious(0) probably_damaging(0.955) TCGA-C8-A26Y-01 17 41582013 41582013 G A DHX8 Silent p.A516A 0.32 TCGA-C8-A26Y-01 17 42018893 42018893 C A PPY Nonsense_Mutation p.E44* 0.15 TCGA-C8-A26Y-01 17 42085925 42085925 C G NAGS Missense_Mutation p.L521V 0.18 tolerated(0.06) possibly_damaging(0.665) TCGA-C8-A26Y-01 17 44249016 44249016 G C KANSL1 Nonsense_Mutation p.S165* 0.36 TCGA-C8-A26Y-01 17 44249261 44249261 G C KANSL1 Silent p.L83L 0.38 TCGA-C8-A26Y-01 17 44833199 44833199 A C NSF 3'UTR 0.17 TCGA-C8-A26Y-01 17 45567604 45567604 G A MRPL45P2 RNA 0.21 TCGA-C8-A26Y-01 17 45734247 45734247 G A KPNB1 Missense_Mutation p.E102K 0.20 deleterious(0.01) probably_damaging(1) TCGA-C8-A26Y-01 17 46052522 46052522 C A CDK5RAP3 Intron 0.39 TCGA-C8-A26Y-01 17 4648155 4648155 C G ZMYND15 Missense_Mutation p.L618V 0.45 tolerated_low_confidence(0.23) benign(0.01) TCGA-C8-A26Y-01 17 48606547 48606547 G A MYCBPAP Missense_Mutation p.E951K 0.32 deleterious(0.02) benign(0.081) TCGA-C8-A26Y-01 17 48704067 48704067 G C CACNA1G Silent p.L2363L 0.21 TCGA-C8-A26Y-01 17 48828109 48828109 G A LUC7L3 3'UTR 0.17 TCGA-C8-A26Y-01 17 53481139 53481139 G T MMD Silent p.L145L 0.15 TCGA-C8-A26Y-01 17 56565281 56565281 C T HSF5 Missense_Mutation p.D119N 0.15 tolerated(0.09) benign(0.342) TCGA-C8-A26Y-01 17 58260613 58260613 C G USP32 Missense_Mutation p.D1346H 0.37 tolerated_low_confidence(0.08) possibly_damaging(0.833) TCGA-C8-A26Y-01 17 60030466 60030466 C G MED13 Missense_Mutation p.D1993H 0.12 deleterious(0.04) probably_damaging(0.954) TCGA-C8-A26Y-01 17 61904937 61904937 G C FTSJ3 5'UTR 0.44 TCGA-C8-A26Y-01 17 61972332 61972332 C T CSH1 3'UTR 0.25 TCGA-C8-A26Y-01 17 65905793 65905793 G C BPTF Missense_Mutation p.D970H 0.13 benign(0.043) TCGA-C8-A26Y-01 17 71281357 71281357 G A CDC42EP4 3'UTR 0.56 TCGA-C8-A26Y-01 17 72832298 72832298 C G TMEM104 Silent p.L321L 0.27 TCGA-C8-A26Y-01 17 73489641 73489641 G C KIAA0195 Missense_Mutation p.G719A 0.42 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 17 73754138 73754138 C T GALK1 Silent p.%3D 0.12 TCGA-C8-A26Y-01 17 73895240 73895240 C T MRPL38 Silent p.L335L 0.24 TCGA-C8-A26Y-01 17 73922234 73922234 G A FBF1 Missense_Mutation p.R235C 0.24 deleterious(0) possibly_damaging(0.791) TCGA-C8-A26Y-01 17 7577528 7577528 G T TP53 Silent p.I251I 0.56 TCGA-C8-A26Y-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.50 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 17 76045561 76045561 C A TNRC6C Missense_Mutation p.Q140K 0.28 deleterious(0.05) benign(0.087) TCGA-C8-A26Y-01 17 77076351 77076351 G C ENGASE Missense_Mutation p.E210Q 0.16 tolerated(0.05) benign(0.128) TCGA-C8-A26Y-01 17 78318661 78318661 C G RNF213 Missense_Mutation p.Q2176E 0.23 benign(0.015) TCGA-C8-A26Y-01 17 78318685 78318685 C T RNF213 Nonsense_Mutation p.Q2184* 0.21 TCGA-C8-A26Y-01 17 78397370 78397370 G C ENDOV Missense_Mutation p.G152R 0.35 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 17 79864720 79864720 G C PCYT2 Missense_Mutation p.Q216E 0.25 deleterious(0.02) benign(0.138) TCGA-C8-A26Y-01 17 80038729 80038729 A T FASN Missense_Mutation p.L2222Q 0.14 tolerated(0.18) possibly_damaging(0.852) TCGA-C8-A26Y-01 17 80051192 80051192 C T FASN Silent p.G186G 0.16 TCGA-C8-A26Y-01 17 8046116 8046116 G A PER1 Missense_Mutation p.S1037F 0.46 deleterious(0) probably_damaging(0.99) TCGA-C8-A26Y-01 17 8046804 8046804 G A PER1 Missense_Mutation p.S951L 0.50 tolerated(0.16) benign(0.121) TCGA-C8-A26Y-01 17 8047086 8047086 G A PER1 Missense_Mutation p.S857L 0.52 tolerated(0.23) benign(0.103) TCGA-C8-A26Y-01 17 8049971 8049971 C T PER1 Silent p.E616E 0.63 TCGA-C8-A26Y-01 17 8053432 8053432 G A PER1 Missense_Mutation p.S129L 0.47 deleterious(0) probably_damaging(0.948) TCGA-C8-A26Y-01 17 80680683 80680683 G A FN3KRP Missense_Mutation p.R130K 0.28 tolerated(1) benign(0.006) TCGA-C8-A26Y-01 17 80714070 80714070 C G TBCD Missense_Mutation p.H72D 0.37 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 17 8384677 8384677 C G MYH10 Missense_Mutation p.E1743Q 0.57 possibly_damaging(0.566) TCGA-C8-A26Y-01 18 12030413 12030413 C T IMPA2 Nonsense_Mutation p.Q275* 0.30 TCGA-C8-A26Y-01 18 14542700 14542700 C T POTEC Nonsense_Mutation p.W149* 0.13 TCGA-C8-A26Y-01 18 30825244 30825244 C T CCDC178 Missense_Mutation p.E520K 0.29 deleterious(0) possibly_damaging(0.768) TCGA-C8-A26Y-01 18 32917214 32917214 C T ZNF24 Silent p.L363L 0.20 TCGA-C8-A26Y-01 18 60225997 60225997 G C ZCCHC2 Missense_Mutation p.E496Q 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-C8-A26Y-01 18 66344394 66344394 G A TMX3 Missense_Mutation p.L381F 0.36 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 18 674229 674229 C T ENOSF1 3'UTR 0.46 TCGA-C8-A26Y-01 18 9954105 9954105 C T VAPA Missense_Mutation p.S261L 0.46 tolerated(0.22) benign(0.03) TCGA-C8-A26Y-01 19 10104341 10104341 C T COL5A3 Missense_Mutation p.R550H 0.21 unknown(0) TCGA-C8-A26Y-01 19 10464749 10464749 G A TYK2 Silent p.I959I 0.60 TCGA-C8-A26Y-01 19 10464775 10464775 G A TYK2 Silent p.L951L 0.64 TCGA-C8-A26Y-01 19 11891225 11891225 C T ZNF441 Missense_Mutation p.R196C 0.46 deleterious(0.02) benign(0) TCGA-C8-A26Y-01 19 12429334 12429334 T C ZNF563 3'UTR 0.14 TCGA-C8-A26Y-01 19 15291538 15291538 G T NOTCH3 Silent p.L1032L 0.46 TCGA-C8-A26Y-01 19 15563608 15563608 C G RASAL3 Missense_Mutation p.E897Q 0.47 tolerated(0.07) benign(0.117) TCGA-C8-A26Y-01 19 17014404 17014404 C G CPAMD8 Silent p.V1526V 0.40 TCGA-C8-A26Y-01 19 18893736 18893736 G A COMP Missense_Mutation p.R755W 0.17 deleterious_low_confidence(0) benign(0.184) TCGA-C8-A26Y-01 19 23318788 23318788 G A ZNF730 Missense_Mutation p.E57K 0.36 tolerated(0.06) possibly_damaging(0.903) TCGA-C8-A26Y-01 19 2989092 2989092 G A TLE6 Nonsense_Mutation p.W258* 0.40 TCGA-C8-A26Y-01 19 34890129 34890129 C G GPI Missense_Mutation p.F440L 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-C8-A26Y-01 19 36831483 36831483 C G ZFP14 Missense_Mutation p.Q415H 0.16 deleterious(0.04) possibly_damaging(0.855) TCGA-C8-A26Y-01 19 38858194 38858194 C T CATSPERG Missense_Mutation p.S939F 0.24 deleterious(0) possibly_damaging(0.683) TCGA-C8-A26Y-01 19 39334666 39334666 C T HNRNPL Silent p.L263L 0.18 TCGA-C8-A26Y-01 19 39897523 39897523 C T ZFP36 5'UTR 0.20 TCGA-C8-A26Y-01 19 40521059 40521059 C T ZNF546 Missense_Mutation p.H628Y 0.15 deleterious(0.02) benign(0.415) TCGA-C8-A26Y-01 19 40885415 40885415 C G HIPK4 3'UTR 0.20 TCGA-C8-A26Y-01 19 41281380 41281380 G T MIA 5'UTR 0.21 TCGA-C8-A26Y-01 19 41518202 41518202 G C CYP2B6 Splice_Site p.X322_splice 0.20 TCGA-C8-A26Y-01 19 42820839 42820839 C A TMEM145 Missense_Mutation p.F251L 0.24 tolerated(0.65) benign(0.406) TCGA-C8-A26Y-01 19 42931413 42931413 C G LIPE 5'UTR 0.21 TCGA-C8-A26Y-01 19 436390 436390 G C SHC2 Missense_Mutation p.I272M 0.64 deleterious(0) probably_damaging(0.953) TCGA-C8-A26Y-01 19 43763217 43763217 G A PSG9 Silent p.F260F 0.22 TCGA-C8-A26Y-01 19 46307901 46307901 G C RSPH6A Nonsense_Mutation p.S421* 0.19 TCGA-C8-A26Y-01 19 47424131 47424131 C T ARHGAP35 Silent p.L733L 0.33 TCGA-C8-A26Y-01 19 51768841 51768841 G A SIGLECL1 Missense_Mutation p.R81K 0.16 tolerated(0.81) benign(0.004) TCGA-C8-A26Y-01 19 52091460 52091460 C A ZNF175 Missense_Mutation p.Q626K 0.17 deleterious(0.02) benign(0.151) TCGA-C8-A26Y-01 19 52447977 52447978 - AC ZNF613 Frame_Shift_Ins p.I281Nfs*164 0.23 TCGA-C8-A26Y-01 19 53116710 53116710 C T ZNF83 Missense_Mutation p.E370K 0.21 deleterious(0.02) probably_damaging(0.985) TCGA-C8-A26Y-01 19 53116726 53116726 C T ZNF83 Silent p.L364L 0.23 TCGA-C8-A26Y-01 19 53453791 53453791 C G ZNF816 Missense_Mutation p.E413Q 0.25 tolerated(0.35) benign(0.281) TCGA-C8-A26Y-01 19 53459288 53459288 G C ZNF816 Missense_Mutation p.L19V 0.24 tolerated(0.11) benign(0.023) TCGA-C8-A26Y-01 19 53960025 53960025 C A ZNF761 RNA 0.23 TCGA-C8-A26Y-01 19 54214325 54214325 G C MIR524 RNA 0.32 TCGA-C8-A26Y-01 19 54677870 54677870 G C MBOAT7 Missense_Mutation p.I429M 0.50 deleterious(0) benign(0.373) TCGA-C8-A26Y-01 19 55176603 55176603 C G LILRB4 Silent p.L243L 0.31 TCGA-C8-A26Y-01 19 55179552 55179552 G T LILRB4 3'UTR 0.29 TCGA-C8-A26Y-01 19 55689594 55689594 C G SYT5 Silent p.V74V 0.20 TCGA-C8-A26Y-01 19 56538906 56538906 A G NLRP5 Missense_Mutation p.Q436R 0.43 tolerated(0.69) benign(0.003) TCGA-C8-A26Y-01 19 56614468 56614468 G C ZNF787 Intron 0.27 TCGA-C8-A26Y-01 19 56935300 56935300 C T ZNF583 Nonsense_Mutation p.Q425* 0.47 TCGA-C8-A26Y-01 19 58265822 58265822 C A ZNF776 Missense_Mutation p.H442N 0.14 tolerated(0.09) benign(0.001) TCGA-C8-A26Y-01 19 58423525 58423525 C A ZNF417 Silent p.V22V 0.24 TCGA-C8-A26Y-01 19 58718134 58718134 G A ZNF274 Missense_Mutation p.E102K 0.14 tolerated(0.51) benign(0.41) TCGA-C8-A26Y-01 19 59009810 59009810 G A SLC27A5 3'UTR 0.40 TCGA-C8-A26Y-01 19 8430846 8430846 C G ANGPTL4 Silent p.L109L 0.45 TCGA-C8-A26Y-01 1 100159585 100159585 G T PALMD Missense_Mutation p.M541I 0.23 tolerated(0.36) benign(0.001) TCGA-C8-A26Y-01 1 100550983 100550983 C T SASS6 Silent p.Q625Q 0.32 TCGA-C8-A26Y-01 1 10412788 10412788 C G KIF1B Missense_Mutation p.S1304C 0.47 deleterious(0.01) possibly_damaging(0.52) TCGA-C8-A26Y-01 1 110050164 110050164 G C AMIGO1 Silent p.L457L 0.20 TCGA-C8-A26Y-01 1 110121823 110121823 C T GNAI3 Intron 0.22 TCGA-C8-A26Y-01 1 112309444 112309444 C G DDX20 Missense_Mutation p.Q800E 0.26 tolerated(0.21) benign(0.338) TCGA-C8-A26Y-01 1 115284172 115284172 C G CSDE1 Missense_Mutation p.K38N 0.24 tolerated_low_confidence(0.13) benign(0.349) TCGA-C8-A26Y-01 1 11982839 11982839 C T KIAA2013 Missense_Mutation p.E581K 0.29 deleterious(0.01) benign(0.415) TCGA-C8-A26Y-01 1 12337412 12337412 C T VPS13D Missense_Mutation p.S1256F 0.13 benign(0.026) TCGA-C8-A26Y-01 1 12446241 12446241 C G VPS13D Intron 0.23 TCGA-C8-A26Y-01 1 1250299 1250299 C T CPSF3L Missense_Mutation p.E209K 0.35 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 1 12726700 12726700 C T AADACL4 Missense_Mutation p.S393F 0.25 deleterious(0.03) benign(0.234) TCGA-C8-A26Y-01 1 144855784 144855784 C A PDE4DIP Missense_Mutation p.A2257S 0.15 tolerated(0.08) possibly_damaging(0.684) TCGA-C8-A26Y-01 1 144923812 144923812 C T PDE4DIP Missense_Mutation p.E216K 0.17 tolerated(0.16) benign(0.008) TCGA-C8-A26Y-01 1 150234978 150234978 G T CA14 Nonsense_Mutation p.E152* 0.39 TCGA-C8-A26Y-01 1 150235209 150235209 G A CA14 Missense_Mutation p.E168K 0.31 deleterious(0.04) benign(0.33) TCGA-C8-A26Y-01 1 150241120 150241120 G A APH1A Missense_Mutation p.R31C 0.52 deleterious(0) possibly_damaging(0.84) TCGA-C8-A26Y-01 1 151214625 151214625 C T PIP5K1A Missense_Mutation p.R464W 0.32 deleterious(0.01) benign(0.013) TCGA-C8-A26Y-01 1 15392123 15392123 C A KAZN Intron 0.30 TCGA-C8-A26Y-01 1 154516499 154516499 C G TDRD10 Silent p.L188L 0.30 TCGA-C8-A26Y-01 1 154527994 154527994 C G UBE2Q1 Silent p.L149L 0.51 TCGA-C8-A26Y-01 1 155851240 155851240 G A SYT11 Missense_Mutation p.E413K 0.44 deleterious(0) benign(0.173) TCGA-C8-A26Y-01 1 158585180 158585180 T C SPTA1 Missense_Mutation p.E2205G 0.12 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 1 158943498 158943498 C A PYHIN1 Missense_Mutation p.T474N 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.788) TCGA-C8-A26Y-01 1 159283665 159283665 T G OR10J3 Missense_Mutation p.K262T 0.15 deleterious(0) probably_damaging(0.978) TCGA-C8-A26Y-01 1 160389350 160389350 G A VANGL2 Missense_Mutation p.V251M 0.35 deleterious(0) probably_damaging(0.911) TCGA-C8-A26Y-01 1 161335346 161335346 G T C1orf192 Silent p.S106S 0.12 TCGA-C8-A26Y-01 1 165532744 165532744 G T LRRC52 Missense_Mutation p.D209Y 0.43 deleterious(0.05) benign(0.002) TCGA-C8-A26Y-01 1 166974503 166974503 A G MAEL Silent p.Q238Q 0.13 TCGA-C8-A26Y-01 1 167741609 167741609 C A MPZL1 Nonsense_Mutation p.S119* 0.47 TCGA-C8-A26Y-01 1 176740240 176740240 G C PAPPA2 Missense_Mutation p.D1547H 0.45 deleterious(0.01) probably_damaging(1) TCGA-C8-A26Y-01 1 180003096 180003096 A G CEP350 Silent p.S1275S 0.11 TCGA-C8-A26Y-01 1 180974600 180974600 C G STX6 Splice_Site p.X12_splice 0.33 TCGA-C8-A26Y-01 1 183191238 183191238 A G LAMC2 Missense_Mutation p.K219E 0.15 deleterious(0.02) benign(0.103) TCGA-C8-A26Y-01 1 184680990 184680990 C A EDEM3 Missense_Mutation p.D520Y 0.27 deleterious(0) benign(0.248) TCGA-C8-A26Y-01 1 18961014 18961014 C T PAX7 Silent p.I101I 0.31 TCGA-C8-A26Y-01 1 196759135 196759136 AC - CFHR3 Intron 0.13 TCGA-C8-A26Y-01 1 197061148 197061148 G A ASPM Silent p.F3111F 0.41 TCGA-C8-A26Y-01 1 197237531 197237531 C G CRB1 5'UTR 0.26 TCGA-C8-A26Y-01 1 202121710 202121710 C G PTPN7 Missense_Mutation p.E384Q 0.14 tolerated(0.47) benign(0.31) TCGA-C8-A26Y-01 1 202718234 202718234 G A KDM5B Missense_Mutation p.R619C 0.31 deleterious(0) probably_damaging(0.957) TCGA-C8-A26Y-01 1 203798773 203798773 G C ZC3H11A Missense_Mutation p.D165H 0.10 deleterious(0) probably_damaging(0.997) TCGA-C8-A26Y-01 1 206154007 206154007 G A FAM72A Missense_Mutation p.D136N 0.24 tolerated(0.21) probably_damaging(0.932) TCGA-C8-A26Y-01 1 206658611 206658611 G A IKBKE Silent p.V528V 0.11 TCGA-C8-A26Y-01 1 206760071 206760071 G A RASSF5 Intron 0.20 TCGA-C8-A26Y-01 1 206760244 206760244 G C RASSF5 Missense_Mutation p.K397N 0.12 tolerated(0.07) benign(0.011) TCGA-C8-A26Y-01 1 206784716 206784716 C T EIF2D Missense_Mutation p.R23Q 0.17 deleterious(0.04) benign(0.187) TCGA-C8-A26Y-01 1 207700196 207700196 G A CR1 Missense_Mutation p.G329S 0.10 deleterious(0.01) probably_damaging(0.97) TCGA-C8-A26Y-01 1 208061265 208061265 C T CD34 Missense_Mutation p.E326K 0.09 deleterious(0) benign(0.027) TCGA-C8-A26Y-01 1 208062855 208062855 C T CD34 Missense_Mutation p.E237K 0.10 deleterious(0) benign(0.435) TCGA-C8-A26Y-01 1 20945129 20945129 G A CDA 3'UTR 0.19 TCGA-C8-A26Y-01 1 21050165 21050165 C T SH2D5 Missense_Mutation p.E288K 0.43 deleterious(0) benign(0.152) TCGA-C8-A26Y-01 1 216373463 216373463 C T USH2A Missense_Mutation p.S1106N 0.48 benign(0.002) TCGA-C8-A26Y-01 1 217947774 217947774 T G SPATA17 Silent p.V206V 0.36 TCGA-C8-A26Y-01 1 223438151 223438151 C G SUSD4 Missense_Mutation p.R182T 0.65 deleterious(0.01) probably_damaging(0.971) TCGA-C8-A26Y-01 1 225147894 225147894 C T DNAH14 Missense_Mutation p.S86F 0.57 tolerated(0.06) benign(0.111) TCGA-C8-A26Y-01 1 226566885 226566885 G C PARP1 Missense_Mutation p.S568C 0.55 deleterious(0) probably_damaging(0.989) TCGA-C8-A26Y-01 1 25568957 25568957 T C C1orf63 3'UTR 0.23 TCGA-C8-A26Y-01 1 26584203 26584203 A T CEP85 Missense_Mutation p.K340I 0.18 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 1 27745512 27745512 C G WASF2 Missense_Mutation p.E70Q 0.20 deleterious(0.01) unknown(0) TCGA-C8-A26Y-01 1 27878020 27878020 C G AHDC1 Missense_Mutation p.E203Q 0.32 tolerated_low_confidence(0.42) possibly_damaging(0.607) TCGA-C8-A26Y-01 1 28764913 28764913 C G PHACTR4 Silent p.V6V 0.16 TCGA-C8-A26Y-01 1 34090797 34090797 T A CSMD2 Missense_Mutation p.K1745M 0.32 deleterious(0) possibly_damaging(0.853) TCGA-C8-A26Y-01 1 34204850 34204850 G A CSMD2 Silent p.I713I 0.18 TCGA-C8-A26Y-01 1 36786320 36786320 G T SH3D21 Nonsense_Mutation p.E686* 0.18 TCGA-C8-A26Y-01 1 40929184 40929184 A G ZFP69B Missense_Mutation p.K510E 0.26 deleterious(0) benign(0.4) TCGA-C8-A26Y-01 1 44156660 44156660 G C KDM4A Missense_Mutation p.E728Q 0.18 tolerated(0.18) probably_damaging(0.932) TCGA-C8-A26Y-01 1 44443705 44443705 C A ATP6V0B 3'UTR 0.23 TCGA-C8-A26Y-01 1 45266520 45266520 C T PLK3 Silent p.F73F 0.33 TCGA-C8-A26Y-01 1 45275974 45275974 T G BTBD19 Missense_Mutation p.L59R 0.25 deleterious(0) probably_damaging(0.972) TCGA-C8-A26Y-01 1 46088486 46088486 C T CCDC17 Missense_Mutation p.R226Q 0.26 tolerated(0.32) benign(0.024) TCGA-C8-A26Y-01 1 46495164 46495164 G A MAST2 Missense_Mutation p.E749K 0.47 deleterious_low_confidence(0) benign(0.217) TCGA-C8-A26Y-01 1 51760099 51760099 G C TTC39A Missense_Mutation p.F414L 0.29 tolerated(0.46) benign(0) TCGA-C8-A26Y-01 1 52255313 52255313 G A NRD1 Missense_Mutation p.S1130L 0.20 tolerated(0.21) benign(0.009) TCGA-C8-A26Y-01 1 59247812 59247813 TC - JUN Frame_Shift_Del p.K311Sfs*6 0.41 TCGA-C8-A26Y-01 1 63944439 63944439 C A ITGB3BP Missense_Mutation p.D123Y 0.18 deleterious(0) probably_damaging(0.994) TCGA-C8-A26Y-01 1 68153524 68153524 C G GADD45A 3'UTR 0.27 TCGA-C8-A26Y-01 1 7309651 7309651 G C CAMTA1 Missense_Mutation p.E135Q 0.35 deleterious(0) probably_damaging(0.992) TCGA-C8-A26Y-01 1 74665373 74665373 C T FPGT-TNNI3K Silent p.F49F 0.29 TCGA-C8-A26Y-01 1 7858699 7858699 C T PER3 Silent p.L252L 0.18 TCGA-C8-A26Y-01 1 85135517 85135517 C G SSX2IP Missense_Mutation p.K91N 0.15 tolerated(0.45) possibly_damaging(0.711) TCGA-C8-A26Y-01 1 85647955 85647955 C G SYDE2 Silent p.V790V 0.45 TCGA-C8-A26Y-01 1 86894140 86894140 G A CLCA2 Missense_Mutation p.D122N 0.17 tolerated(0.05) probably_damaging(0.954) TCGA-C8-A26Y-01 1 89294223 89294223 G A PKN2 Missense_Mutation p.E827K 0.29 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 1 9171339 9171339 C T GPR157 Missense_Mutation p.R198K 0.12 tolerated(0.12) benign(0.359) TCGA-C8-A26Y-01 1 92948572 92948572 C T GFI1 Silent p.A49A 0.26 TCGA-C8-A26Y-01 1 93730265 93730265 C A CCDC18 Nonsense_Mutation p.S1284* 0.18 TCGA-C8-A26Y-01 1 93998592 93998592 G C FNBP1L Missense_Mutation p.M251I 0.29 tolerated(0.61) benign(0.092) TCGA-C8-A26Y-01 1 99150551 99150551 C A SNX7 Missense_Mutation p.F97L 0.25 tolerated(0.09) benign(0.012) TCGA-C8-A26Y-01 20 10633188 10633188 C T JAG1 Missense_Mutation p.V272I 0.33 tolerated(0.08) probably_damaging(0.968) TCGA-C8-A26Y-01 20 16488605 16488605 G A KIF16B Nonsense_Mutation p.Q233* 0.17 TCGA-C8-A26Y-01 20 17970641 17970641 C T MGME1 Silent p.F308F 0.16 TCGA-C8-A26Y-01 20 17970660 17970660 T A MGME1 Missense_Mutation p.S315T 0.17 tolerated(0.23) benign(0.398) TCGA-C8-A26Y-01 20 17970661 17970661 C G MGME1 Missense_Mutation p.S315C 0.16 tolerated(0.05) probably_damaging(0.954) TCGA-C8-A26Y-01 20 18296115 18296115 A C ZNF133 Missense_Mutation p.E206A 0.24 tolerated(0.14) possibly_damaging(0.641) TCGA-C8-A26Y-01 20 23472533 23472533 C A CST8 Missense_Mutation p.Q77K 0.17 deleterious(0.01) benign(0.31) TCGA-C8-A26Y-01 20 25281467 25281468 - C ABHD12 Intron 0.22 TCGA-C8-A26Y-01 20 25434275 25434275 C T NINL Missense_Mutation p.E1321K 0.13 deleterious(0.03) benign(0.108) TCGA-C8-A26Y-01 20 2637595 2637595 G C NOP56 Intron 0.46 TCGA-C8-A26Y-01 20 2776783 2776783 C T CPXM1 Missense_Mutation p.E423K 0.11 tolerated(0.14) benign(0.34) TCGA-C8-A26Y-01 20 2998481 2998481 G A PTPRA Silent p.V321V 0.15 TCGA-C8-A26Y-01 20 30733156 30733156 G T TM9SF4 Silent p.L271L 0.19 TCGA-C8-A26Y-01 20 30803087 30803087 C G POFUT1 Missense_Mutation p.Q88E 0.33 tolerated(0.33) benign(0.001) TCGA-C8-A26Y-01 20 31434459 31434459 G A MAPRE1 Silent p.E211E 0.21 TCGA-C8-A26Y-01 20 31967405 31967405 G C CDK5RAP1 Silent p.L323L 0.07 TCGA-C8-A26Y-01 20 3202556 3202556 G A ITPA Missense_Mutation p.E161K 0.16 tolerated(0.43) benign(0.001) TCGA-C8-A26Y-01 20 33329126 33329126 G C NCOA6 Nonsense_Mutation p.S1645* 0.16 TCGA-C8-A26Y-01 20 33894574 33894574 A T UQCC1 Silent p.L220L 0.12 TCGA-C8-A26Y-01 20 34057805 34057805 G A CEP250 Silent p.E314E 0.17 TCGA-C8-A26Y-01 20 34092674 34092674 G A CEP250 Silent p.L2159L 0.24 TCGA-C8-A26Y-01 20 34262465 34262465 C T NFS1 Silent p.V341V 0.36 TCGA-C8-A26Y-01 20 36841549 36841549 C G KIAA1755 Missense_Mutation p.Q1166H 0.35 tolerated(0.11) benign(0.002) TCGA-C8-A26Y-01 20 37198601 37198601 G C RALGAPB Missense_Mutation p.R1342T 0.17 deleterious(0) benign(0.04) TCGA-C8-A26Y-01 20 39752030 39752030 G A TOP1 3'UTR 0.17 TCGA-C8-A26Y-01 20 40117094 40117094 G A CHD6 Silent p.L611L 0.34 TCGA-C8-A26Y-01 20 43559217 43559217 C A PABPC1L Silent p.L363L 0.13 TCGA-C8-A26Y-01 20 44190777 44190777 A C WFDC8 Silent p.T36T 0.19 TCGA-C8-A26Y-01 20 44663663 44663663 G C SLC12A5 Missense_Mutation p.K66N 0.14 deleterious(0.02) benign(0.111) TCGA-C8-A26Y-01 20 44681673 44681673 G C SLC12A5 Missense_Mutation p.E842Q 0.42 tolerated(0.06) benign(0.099) TCGA-C8-A26Y-01 20 45132914 45132914 G C ZNF334 Missense_Mutation p.F60L 0.13 tolerated(0.36) benign(0.001) TCGA-C8-A26Y-01 20 45891085 45891085 G A ZMYND8 Missense_Mutation p.T523M 0.35 tolerated_low_confidence(0.26) benign(0.003) TCGA-C8-A26Y-01 20 52674691 52674691 G A BCAS1 Silent p.D25D 0.29 TCGA-C8-A26Y-01 20 56090644 56090644 C T CTCFL Intron 0.44 TCGA-C8-A26Y-01 20 5903756 5903756 G A CHGB Silent p.G322G 0.42 TCGA-C8-A26Y-01 20 62337709 62337709 C T ARFRP1 Silent p.K88K 0.35 TCGA-C8-A26Y-01 20 62839631 62839631 C G MYT1 Nonsense_Mutation p.S361* 0.30 TCGA-C8-A26Y-01 21 27347389 27347389 A T APP Silent p.P484P 0.12 TCGA-C8-A26Y-01 21 28212280 28212280 G C ADAMTS1 Missense_Mutation p.P589R 0.52 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 21 31988928 31988928 C T KRTAP20-1 Missense_Mutation p.S52L 0.47 unknown(0) TCGA-C8-A26Y-01 21 33078619 33078619 G C SCAF4 Missense_Mutation p.L28V 0.36 possibly_damaging(0.684) TCGA-C8-A26Y-01 21 34897181 34897181 G A GART Missense_Mutation p.S398L 0.43 tolerated(0.39) benign(0.017) TCGA-C8-A26Y-01 21 34906959 34906959 C T GART Missense_Mutation p.M114I 0.55 deleterious(0) possibly_damaging(0.847) TCGA-C8-A26Y-01 21 34922706 34922706 C G SON Missense_Mutation p.S390C 0.49 possibly_damaging(0.7) TCGA-C8-A26Y-01 21 34969637 34969637 G A CRYZL1 Silent p.I249I 0.52 TCGA-C8-A26Y-01 21 38538313 38538313 C G TTC3 Missense_Mutation p.S1266C 0.21 deleterious(0.05) possibly_damaging(0.778) TCGA-C8-A26Y-01 21 43855013 43855013 G A UBASH3A Missense_Mutation p.E448K 0.49 tolerated(0.07) probably_damaging(0.998) TCGA-C8-A26Y-01 21 43862645 43862645 C T UBASH3A Missense_Mutation p.P524S 0.35 deleterious(0) probably_damaging(0.974) TCGA-C8-A26Y-01 21 45514103 45514103 G A TRAPPC10 Missense_Mutation p.E1053K 0.15 tolerated(0.06) benign(0.102) TCGA-C8-A26Y-01 21 47817975 47817975 G C PCNT Missense_Mutation p.E1498D 0.38 possibly_damaging(0.636) TCGA-C8-A26Y-01 22 19223377 19223377 C T CLTCL1 Missense_Mutation p.G271S 0.18 tolerated(0.19) benign(0.41) TCGA-C8-A26Y-01 22 19960530 19960530 G A ARVCF Missense_Mutation p.S823L 0.21 deleterious(0) benign(0.24) TCGA-C8-A26Y-01 22 20130513 20130513 G A ZDHHC8 Missense_Mutation p.E454K 0.38 deleterious(0) possibly_damaging(0.631) TCGA-C8-A26Y-01 22 21115652 21115652 C G PI4KA Missense_Mutation p.D911H 0.35 deleterious(0.04) benign(0.289) TCGA-C8-A26Y-01 22 24939983 24939983 G T GUCD1 Nonsense_Mutation p.S152* 0.12 TCGA-C8-A26Y-01 22 25315804 25315804 G A SGSM1 Missense_Mutation p.D1068N 0.22 deleterious(0) probably_damaging(0.962) TCGA-C8-A26Y-01 22 26423196 26423196 T C MYO18B Missense_Mutation p.L2419P 0.19 tolerated(0.21) benign(0.009) TCGA-C8-A26Y-01 22 26829767 26829767 C T ASPHD2 Silent p.I62I 0.16 TCGA-C8-A26Y-01 22 28192899 28192899 C T MN1 Missense_Mutation p.M1211I 0.17 possibly_damaging(0.554) TCGA-C8-A26Y-01 22 29538172 29538172 T C KREMEN1 Intron 0.31 TCGA-C8-A26Y-01 22 29932688 29932688 C G THOC5 Missense_Mutation p.E213D 0.33 tolerated(0.12) possibly_damaging(0.874) TCGA-C8-A26Y-01 22 35717816 35717816 G C TOM1 Intron 0.47 TCGA-C8-A26Y-01 22 39132180 39132180 G A GTPBP1 3'Flank 0.18 TCGA-C8-A26Y-01 22 39380199 39380199 C G APOBEC3B Nonsense_Mutation p.S46* 0.62 TCGA-C8-A26Y-01 22 39440105 39440105 C T APOBEC3F Intron 0.38 TCGA-C8-A26Y-01 22 40825709 40825709 C T MKL1 Missense_Mutation p.D68N 0.23 deleterious(0) probably_damaging(0.995) TCGA-C8-A26Y-01 22 41075436 41075436 A C MCHR1 5'UTR 0.38 TCGA-C8-A26Y-01 22 41726065 41726065 G A ZC3H7B Silent p.Q161Q 0.35 TCGA-C8-A26Y-01 22 42290843 42290843 C T SREBF2 Silent p.V799V 0.31 TCGA-C8-A26Y-01 22 43537171 43537171 C T MCAT Missense_Mutation p.E170K 0.28 tolerated(0.25) possibly_damaging(0.654) TCGA-C8-A26Y-01 22 45182383 45182383 G A PRR5-ARHGAP8 Silent p.V246V 0.37 TCGA-C8-A26Y-01 22 45599780 45599780 G A KIAA0930 Silent p.V206V 0.24 TCGA-C8-A26Y-01 22 50356394 50356394 C T PIM3 Missense_Mutation p.S225L 0.36 deleterious(0.04) probably_damaging(0.917) TCGA-C8-A26Y-01 22 50659211 50659211 C G TUBGCP6 Missense_Mutation p.D1193H 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-C8-A26Y-01 2 100623122 100623122 G C AFF3 Missense_Mutation p.S307C 0.47 deleterious(0.03) possibly_damaging(0.621) TCGA-C8-A26Y-01 2 108921972 108921972 G A SULT1C2 Missense_Mutation p.M244I 0.31 deleterious(0) probably_damaging(0.997) TCGA-C8-A26Y-01 2 109086943 109086943 A T GCC2 Missense_Mutation p.K386N 0.38 deleterious(0) probably_damaging(0.994) TCGA-C8-A26Y-01 2 112944825 112944825 C G FBLN7 Silent p.L354L 0.17 TCGA-C8-A26Y-01 2 113067713 113067714 AC - ZC3H6 Frame_Shift_Del p.Q197Efs*10 0.14 TCGA-C8-A26Y-01 2 128867240 128867240 T C UGGT1 Silent p.C147C 0.07 TCGA-C8-A26Y-01 2 152236110 152236110 G C TNFAIP6 3'UTR 0.53 TCGA-C8-A26Y-01 2 153473673 153473673 C G FMNL2 Silent p.L427L 0.37 TCGA-C8-A26Y-01 2 15432698 15432698 C T NBAS Missense_Mutation p.D1664N 0.22 tolerated(0.45) benign(0.005) TCGA-C8-A26Y-01 2 158114646 158114646 A C GALNT5 Missense_Mutation p.I18L 0.27 deleterious(0.01) possibly_damaging(0.786) TCGA-C8-A26Y-01 2 160206643 160206643 G A BAZ2B Missense_Mutation p.P1480L 0.39 benign(0.165) TCGA-C8-A26Y-01 2 162879266 162879266 C T DPP4 Missense_Mutation p.R356K 0.40 tolerated(0.52) benign(0.215) TCGA-C8-A26Y-01 2 166532849 166532849 G C CSRNP3 Missense_Mutation p.E146Q 0.39 deleterious(0.03) probably_damaging(0.994) TCGA-C8-A26Y-01 2 168106123 168106123 C G XIRP2 Missense_Mutation p.Q2741E 0.22 possibly_damaging(0.79) TCGA-C8-A26Y-01 2 171573774 171573774 G A SP5 Missense_Mutation p.E353K 0.25 deleterious(0) possibly_damaging(0.635) TCGA-C8-A26Y-01 2 173955864 173955864 G A MLTK Nonsense_Mutation p.W35* 0.19 TCGA-C8-A26Y-01 2 177033861 177033861 C T HOXD3 Nonsense_Mutation p.Q7* 0.16 TCGA-C8-A26Y-01 2 179407856 179407856 C G TTN Missense_Mutation p.E32282Q 0.26 TCGA-C8-A26Y-01 2 179615969 179615969 G A TTN Intron 0.32 TCGA-C8-A26Y-01 2 180311286 180311286 C A ZNF385B Silent p.V294V 0.40 TCGA-C8-A26Y-01 2 187626849 187626849 C T FAM171B Missense_Mutation p.H594Y 0.35 tolerated(0.06) possibly_damaging(0.811) TCGA-C8-A26Y-01 2 197650193 197650193 G C GTF3C3 Missense_Mutation p.S338C 0.27 tolerated(0.08) benign(0.011) TCGA-C8-A26Y-01 2 198540114 198540114 C T RFTN2 Silent p.L23L 0.27 TCGA-C8-A26Y-01 2 203149118 203149118 G A NOP58 Missense_Mutation p.M116I 0.27 deleterious(0.03) possibly_damaging(0.627) TCGA-C8-A26Y-01 2 207174095 207174095 G C ZDBF2 Missense_Mutation p.E1615Q 0.39 deleterious(0.01) benign(0.044) TCGA-C8-A26Y-01 2 207174272 207174272 C G ZDBF2 Missense_Mutation p.H1674D 0.35 deleterious(0.04) benign(0.227) TCGA-C8-A26Y-01 2 211455582 211455582 C T CPS1 Missense_Mutation p.T306I 0.32 tolerated(0.06) possibly_damaging(0.628) TCGA-C8-A26Y-01 2 211542801 211542801 G A CPS1 3'UTR 0.35 TCGA-C8-A26Y-01 2 219110143 219110143 G T ARPC2 Nonsense_Mutation p.E184* 0.13 TCGA-C8-A26Y-01 2 220075710 220075710 C T ABCB6 Missense_Mutation p.E697K 0.39 tolerated(0.28) benign(0.012) TCGA-C8-A26Y-01 2 223782858 223782861 ACAA - ACSL3 Frame_Shift_Del p.T219Sfs*2 0.34 TCGA-C8-A26Y-01 2 225738737 225738737 C G DOCK10 Missense_Mutation p.E411D 0.31 tolerated(0.3) benign(0.032) TCGA-C8-A26Y-01 2 231267756 231267756 G C SP140L 3'UTR 0.32 TCGA-C8-A26Y-01 2 232578238 232578240 GTT - PTMA 3'UTR 0.26 TCGA-C8-A26Y-01 2 236839505 236839505 C T AGAP1 Missense_Mutation p.S474L 0.43 tolerated(0.2) probably_damaging(0.977) TCGA-C8-A26Y-01 2 24046241 24046241 T A ATAD2B Missense_Mutation p.H673L 0.26 deleterious(0.01) benign(0.034) TCGA-C8-A26Y-01 2 242179340 242179340 C G HDLBP Missense_Mutation p.E789D 0.20 tolerated(0.07) benign(0.398) TCGA-C8-A26Y-01 2 242352742 242352742 G A FARP2 Missense_Mutation p.E177K 0.34 deleterious(0) probably_damaging(0.947) TCGA-C8-A26Y-01 2 24535095 24535095 A T ITSN2 Missense_Mutation p.I113N 0.15 tolerated(0.2) possibly_damaging(0.607) TCGA-C8-A26Y-01 2 25965240 25965240 C T ASXL2 Silent p.Q1322Q 0.26 TCGA-C8-A26Y-01 2 27591902 27591902 C G EIF2B4 Missense_Mutation p.S150T 0.20 tolerated(0.62) benign(0.038) TCGA-C8-A26Y-01 2 27664625 27664625 C T NRBP1 Silent p.F518F 0.44 TCGA-C8-A26Y-01 2 29063329 29063329 T C SPDYA Missense_Mutation p.S282P 0.23 tolerated_low_confidence(0.14) benign(0.001) TCGA-C8-A26Y-01 2 37428826 37428827 AG - CEBPZ-AS1 Frame_Shift_Del p.E69Afs*41 0.14 TCGA-C8-A26Y-01 2 43813569 43813569 C G THADA Missense_Mutation p.K168N 0.23 deleterious(0) possibly_damaging(0.694) TCGA-C8-A26Y-01 2 48701845 48701845 C G PPP1R21 Missense_Mutation p.S371C 0.24 deleterious(0.02) probably_damaging(0.943) TCGA-C8-A26Y-01 2 54150229 54150229 G C PSME4 Silent p.L645L 0.33 TCGA-C8-A26Y-01 2 54870140 54870140 G C SPTBN1 Missense_Mutation p.E1293D 0.29 tolerated(0.15) possibly_damaging(0.572) TCGA-C8-A26Y-01 2 55563833 55563834 TC - CCDC88A Frame_Shift_Del p.E547Kfs*7 0.19 TCGA-C8-A26Y-01 2 61456067 61456067 C T USP34 Silent p.V2421V 0.49 TCGA-C8-A26Y-01 2 61726027 61726027 C T XPO1 Silent p.Q204Q 0.26 TCGA-C8-A26Y-01 2 64084985 64084985 G A UGP2 Missense_Mutation p.G57E 0.41 tolerated(0.12) benign(0.032) TCGA-C8-A26Y-01 2 67624583 67624583 G C ETAA1 Translation_Start_Site p.M1? 0.52 deleterious(0) probably_damaging(0.97) TCGA-C8-A26Y-01 2 67630796 67630796 G A ETAA1 Missense_Mutation p.E328K 0.43 tolerated(0.09) benign(0.199) TCGA-C8-A26Y-01 2 69746260 69746260 A G AAK1 Silent p.T441T 0.14 TCGA-C8-A26Y-01 2 72362039 72362039 G C CYP26B1 Missense_Mutation p.Q238E 0.44 deleterious(0.01) benign(0.065) TCGA-C8-A26Y-01 2 74043812 74043812 C T C2orf78 Missense_Mutation p.S821F 0.51 deleterious(0) benign(0.405) TCGA-C8-A26Y-01 2 74140657 74140657 T C ACTG2 Missense_Mutation p.I166T 0.07 tolerated_low_confidence(0.06) probably_damaging(0.993) TCGA-C8-A26Y-01 2 74184263 74184263 G C DGUOK Missense_Mutation p.K201N 0.33 tolerated(0.47) possibly_damaging(0.802) TCGA-C8-A26Y-01 2 74642708 74642708 G A C2orf81 Missense_Mutation p.S172L 0.26 tolerated(0.12) benign(0.048) TCGA-C8-A26Y-01 2 74758059 74758059 C T HTRA2 Silent p.L245L 0.46 TCGA-C8-A26Y-01 2 96688944 96688945 AG - GPAT2 Frame_Shift_Del p.F687Sfs*30 0.12 TCGA-C8-A26Y-01 2 97274300 97274300 C T KANSL3 Silent p.L562L 0.41 TCGA-C8-A26Y-01 2 97274712 97274712 C T KANSL3 Silent p.K491K 0.21 TCGA-C8-A26Y-01 2 97274720 97274720 C T KANSL3 Missense_Mutation p.E489K 0.22 deleterious(0.02) benign(0.097) TCGA-C8-A26Y-01 2 99998687 99998687 C T EIF5B Silent p.F709F 0.33 TCGA-C8-A26Y-01 3 100948257 100948257 T A IMPG2 Missense_Mutation p.R1200S 0.42 deleterious(0) possibly_damaging(0.721) TCGA-C8-A26Y-01 3 101484237 101484237 G A CEP97 Missense_Mutation p.D814N 0.62 tolerated_low_confidence(0.18) benign(0.006) TCGA-C8-A26Y-01 3 107776388 107776388 C T CD47 Silent p.L271L 0.53 TCGA-C8-A26Y-01 3 108163603 108163603 C T MYH15 Missense_Mutation p.E867K 0.57 tolerated(0.1) probably_damaging(0.997) TCGA-C8-A26Y-01 3 112066499 112066499 G A CD200 Nonsense_Mutation p.W197* 0.11 TCGA-C8-A26Y-01 3 112546483 112546483 C A CD200R1L Missense_Mutation p.C54F 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-C8-A26Y-01 3 113082085 113082085 C T WDR52 Silent p.R947R 0.56 TCGA-C8-A26Y-01 3 113225375 113225375 A C SPICE1 Silent p.T26T 0.40 TCGA-C8-A26Y-01 3 118621320 118621320 G A IGSF11 3'UTR 0.38 TCGA-C8-A26Y-01 3 121413701 121413701 T G GOLGB1 Missense_Mutation p.K1890T 0.39 possibly_damaging(0.697) TCGA-C8-A26Y-01 3 121822403 121822403 G A CD86 Missense_Mutation p.D37N 0.44 tolerated(0.28) possibly_damaging(0.548) TCGA-C8-A26Y-01 3 123946843 123946843 T A KALRN Missense_Mutation p.F25Y 0.38 tolerated_low_confidence(1) benign(0.074) TCGA-C8-A26Y-01 3 124132497 124132497 G T KALRN Nonsense_Mutation p.E841* 0.61 TCGA-C8-A26Y-01 3 126724938 126724938 G A PLXNA1 Silent p.V638V 0.73 TCGA-C8-A26Y-01 3 130289703 130289703 G A COL6A6 Missense_Mutation p.D815N 0.59 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 3 133307054 133307054 C T CDV3 3'UTR 0.78 TCGA-C8-A26Y-01 3 142499689 142499689 G A TRPC1 Missense_Mutation p.E260K 0.63 tolerated(0.05) benign(0.019) TCGA-C8-A26Y-01 3 1445027 1445027 C A CNTN6 Missense_Mutation p.F1004L 0.50 tolerated(0.65) benign(0) TCGA-C8-A26Y-01 3 149087677 149087680 AAAT - TM4SF1 Intron 0.29 TCGA-C8-A26Y-01 3 14939068 14939068 G A FGD5 Missense_Mutation p.R934K 0.53 tolerated(1) benign(0.01) TCGA-C8-A26Y-01 3 15093776 15093776 C G MRPS25 3'UTR 0.55 TCGA-C8-A26Y-01 3 15711902 15711902 C T ANKRD28 Missense_Mutation p.E1013K 0.46 tolerated(0.81) benign(0.007) TCGA-C8-A26Y-01 3 160155691 160155691 C G TRIM59 3'UTR 0.12 TCGA-C8-A26Y-01 3 167728605 167728605 C G GOLIM4 Missense_Mutation p.E623Q 0.39 tolerated(0.06) probably_damaging(0.936) TCGA-C8-A26Y-01 3 167759237 167759237 C G GOLIM4 Missense_Mutation p.E181D 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-C8-A26Y-01 3 169814932 169814932 C T PHC3 3'UTR 0.24 TCGA-C8-A26Y-01 3 171405270 171405270 C A PLD1 Silent p.L548L 0.29 TCGA-C8-A26Y-01 3 182605459 182605459 A T ATP11B Missense_Mutation p.H934L 0.14 tolerated(0.11) benign(0.102) TCGA-C8-A26Y-01 3 182988034 182988034 G C B3GNT5 Missense_Mutation p.D150H 0.28 tolerated(0.07) benign(0.29) TCGA-C8-A26Y-01 3 182988373 182988373 G A B3GNT5 Missense_Mutation p.D263N 0.17 tolerated(0.28) probably_damaging(0.914) TCGA-C8-A26Y-01 3 185643399 185643399 T G TRA2B Missense_Mutation p.R62S 0.28 tolerated_low_confidence(0.2) unknown(0) TCGA-C8-A26Y-01 3 186506999 186506999 G A EIF4A2 Missense_Mutation p.E389K 0.31 deleterious(0) possibly_damaging(0.747) TCGA-C8-A26Y-01 3 189604231 189604231 G A TP63 Silent p.L466L 0.33 TCGA-C8-A26Y-01 3 190167527 190167527 G T TMEM207 Missense_Mutation p.F24L 0.25 tolerated(0.07) benign(0.083) TCGA-C8-A26Y-01 3 191093368 191093368 C T CCDC50 Silent p.L322L 0.45 TCGA-C8-A26Y-01 3 193374947 193374947 G C OPA1 Missense_Mutation p.D735H 0.30 deleterious(0.03) benign(0.414) TCGA-C8-A26Y-01 3 194062610 194062610 C A CPN2 Missense_Mutation p.W274C 0.11 deleterious(0.01) benign(0.103) TCGA-C8-A26Y-01 3 194154626 194154626 C G ATP13A3 Splice_Site p.X707_splice 0.47 TCGA-C8-A26Y-01 3 196792627 196792627 C A DLG1 Missense_Mutation p.D751Y 0.16 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 3 25656736 25656736 A C TOP2B Missense_Mutation p.L1179R 0.33 deleterious(0) probably_damaging(0.993) TCGA-C8-A26Y-01 3 32767040 32767040 C G CNOT10 Missense_Mutation p.Q381E 0.61 tolerated(0.13) benign(0.061) TCGA-C8-A26Y-01 3 33134522 33134522 G T TMPPE Missense_Mutation p.S389Y 0.62 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 3 33134563 33134563 C G TMPPE Missense_Mutation p.K375N 0.57 deleterious(0.01) probably_damaging(0.989) TCGA-C8-A26Y-01 3 33183978 33183978 G A CRTAP 3'UTR 0.60 TCGA-C8-A26Y-01 3 35723355 35723355 G T ARPP21 Nonsense_Mutation p.E38* 0.44 TCGA-C8-A26Y-01 3 44285072 44285072 G C TOPAZ1 Missense_Mutation p.L358F 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A26Y-01 3 47038822 47038822 A G NBEAL2 Missense_Mutation p.E908G 0.36 deleterious(0.02) benign(0.003) TCGA-C8-A26Y-01 3 48040280 48040280 T C MAP4 Missense_Mutation p.D24G 0.19 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 3 48040282 48040282 C A MAP4 Silent p.R23R 0.19 TCGA-C8-A26Y-01 3 49052659 49052659 G C WDR6 Missense_Mutation p.E1132Q 0.65 tolerated(0.16) benign(0.315) TCGA-C8-A26Y-01 3 49701937 49701937 C G BSN Missense_Mutation p.S3897C 0.73 probably_damaging(0.971) TCGA-C8-A26Y-01 3 49770247 49770247 T C IP6K1 Missense_Mutation p.E198G 0.32 deleterious(0.01) possibly_damaging(0.583) TCGA-C8-A26Y-01 3 52724768 52724768 G A GNL3 Intron 0.55 TCGA-C8-A26Y-01 3 57131939 57131939 C G IL17RD Missense_Mutation p.E598Q 0.67 deleterious_low_confidence(0.04) possibly_damaging(0.46) TCGA-C8-A26Y-01 3 57135219 57135219 G C IL17RD Missense_Mutation p.F384L 0.52 deleterious(0.03) benign(0.285) TCGA-C8-A26Y-01 3 97851707 97851707 C A OR5H1 Missense_Mutation p.H56N 0.48 deleterious(0) probably_damaging(0.95) TCGA-C8-A26Y-01 4 103592459 103592459 G C MANBA Silent p.L403L 0.48 TCGA-C8-A26Y-01 4 104061023 104061023 C A CENPE Nonsense_Mutation p.E2043* 0.44 TCGA-C8-A26Y-01 4 10447058 10447058 C T ZNF518B Missense_Mutation p.E299K 0.35 deleterious(0.03) possibly_damaging(0.612) TCGA-C8-A26Y-01 4 111441503 111441503 C A ENPEP Missense_Mutation p.Q570K 0.35 tolerated(0.28) benign(0.004) TCGA-C8-A26Y-01 4 111470981 111470981 C G ENPEP Missense_Mutation p.Q814E 0.46 deleterious(0) probably_damaging(0.988) TCGA-C8-A26Y-01 4 113461086 113461086 C T C4orf21 Silent p.L2035L 0.44 TCGA-C8-A26Y-01 4 114277934 114277934 C G ANK2 Missense_Mutation p.F2720L 0.54 probably_damaging(0.998) TCGA-C8-A26Y-01 4 118006472 118006472 G T TRAM1L1 Silent p.I26I 0.30 TCGA-C8-A26Y-01 4 166024129 166024129 G C TMEM192 Missense_Mutation p.I49M 0.52 tolerated(0.15) possibly_damaging(0.48) TCGA-C8-A26Y-01 4 17694969 17694969 C G FAM184B Missense_Mutation p.E482Q 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-C8-A26Y-01 4 184431864 184431864 C T ING2 Missense_Mutation p.S201L 0.25 deleterious(0.03) probably_damaging(0.954) TCGA-C8-A26Y-01 4 186112073 186112074 GA - KIAA1430 Frame_Shift_Del p.S93Ifs*12 0.31 TCGA-C8-A26Y-01 4 187540106 187540106 C T FAT1 Missense_Mutation p.R2545K 0.39 benign(0.008) TCGA-C8-A26Y-01 4 39322978 39322979 TC - RFC1 Frame_Shift_Del p.E246Sfs*14 0.33 TCGA-C8-A26Y-01 4 4199177 4199177 G A OTOP1 Missense_Mutation p.R462W 0.14 deleterious(0) benign(0.1) TCGA-C8-A26Y-01 4 46264068 46264068 C T GABRA2 Missense_Mutation p.A312T 0.14 deleterious(0) probably_damaging(0.973) TCGA-C8-A26Y-01 4 48147155 48147155 G A TEC Nonsense_Mutation p.Q471* 0.08 TCGA-C8-A26Y-01 4 48147183 48147183 G A TEC Silent p.F461F 0.12 TCGA-C8-A26Y-01 4 48147487 48147487 G C TEC Missense_Mutation p.I397M 0.11 deleterious(0) probably_damaging(0.951) TCGA-C8-A26Y-01 4 48636338 48636338 C G FRYL Missense_Mutation p.K30N 0.37 deleterious(0) benign(0.273) TCGA-C8-A26Y-01 4 68511732 68511732 C T UBA6 Missense_Mutation p.G440E 0.30 deleterious(0.02) possibly_damaging(0.566) TCGA-C8-A26Y-01 4 70465032 70465032 G A UGT2A1 Missense_Mutation p.R476C 0.67 deleterious(0.01) possibly_damaging(0.846) TCGA-C8-A26Y-01 4 72205157 72205157 C T SLC4A4 Silent p.L108L 0.33 TCGA-C8-A26Y-01 4 72425921 72425921 G A SLC4A4 Missense_Mutation p.E1017K 0.27 tolerated(0.72) benign(0.014) TCGA-C8-A26Y-01 4 74365813 74365813 C A AFM Missense_Mutation p.F505L 0.30 tolerated(0.54) probably_damaging(1) TCGA-C8-A26Y-01 4 84368172 84368172 C G HELQ Missense_Mutation p.S403T 0.52 tolerated(0.12) benign(0.008) TCGA-C8-A26Y-01 4 86571 86571 G C Z95704.2 RNA 0.41 TCGA-C8-A26Y-01 4 88973231 88973231 C T PKD2 Missense_Mutation p.P546L 0.17 deleterious(0) possibly_damaging(0.672) TCGA-C8-A26Y-01 4 89329723 89329723 G A HERC6 Missense_Mutation p.R441K 0.29 tolerated(0.09) benign(0.085) TCGA-C8-A26Y-01 4 90857263 90857263 G C MMRN1 Missense_Mutation p.R811T 0.35 tolerated(0.25) benign(0.021) TCGA-C8-A26Y-01 4 95173942 95173942 T G SMARCAD1 Silent p.V355V 0.37 TCGA-C8-A26Y-01 5 10236621 10236621 G A FAM173B Missense_Mutation p.S138F 0.36 deleterious(0.01) possibly_damaging(0.707) TCGA-C8-A26Y-01 5 102483692 102483692 T C PPIP5K2 Missense_Mutation p.Y234H 0.18 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 5 109120580 109120580 T C MAN2A1 Silent p.A571A 0.10 TCGA-C8-A26Y-01 5 109202657 109202657 G C MAN2A1 Missense_Mutation p.L1131F 0.39 deleterious(0) probably_damaging(0.938) TCGA-C8-A26Y-01 5 111496376 111496376 G C EPB41L4A 3'Flank 0.25 TCGA-C8-A26Y-01 5 114462415 114462416 TA - TRIM36 Frame_Shift_Del p.N657Kfs*14 0.20 TCGA-C8-A26Y-01 5 114956158 114956158 C T TMED7-TICAM2 Missense_Mutation p.E138K 0.24 tolerated_low_confidence(0.64) probably_damaging(0.966) TCGA-C8-A26Y-01 5 121356179 121356179 G A SRFBP1 Missense_Mutation p.G250E 0.25 tolerated(1) benign(0.002) TCGA-C8-A26Y-01 5 121786788 121786788 C G SNCAIP Missense_Mutation p.S749C 0.19 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Y-01 5 125930902 125930902 G A ALDH7A1 5'UTR 0.27 TCGA-C8-A26Y-01 5 127610376 127610376 C G FBN2 Splice_Site p.X2532_splice 0.14 TCGA-C8-A26Y-01 5 129243966 129243966 T C CHSY3 Silent p.L333L 0.21 TCGA-C8-A26Y-01 5 1293843 1293843 G T TERT Nonsense_Mutation p.Y386* 0.35 TCGA-C8-A26Y-01 5 134305689 134305689 G C CATSPER3 Missense_Mutation p.K53N 0.22 tolerated(0.43) benign(0.017) TCGA-C8-A26Y-01 5 135583271 135583271 C G TRPC7 Missense_Mutation p.D578H 0.30 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 5 13708288 13708288 G A DNAH5 Silent p.L4428L 0.23 TCGA-C8-A26Y-01 5 140255159 140255159 C T PCDHA12 Silent p.S34S 0.24 TCGA-C8-A26Y-01 5 140562820 140562820 G A PCDHB16 Missense_Mutation p.R229H 0.30 tolerated_low_confidence(0.42) benign(0.003) TCGA-C8-A26Y-01 5 140564255 140564255 G C PCDHB16 Silent p.L707L 0.27 TCGA-C8-A26Y-01 5 140605262 140605262 G T PCDHB14 Nonsense_Mutation p.E729* 0.32 TCGA-C8-A26Y-01 5 140729835 140729835 G C PCDHGB1 Missense_Mutation p.R3T 0.27 deleterious(0.03) benign(0.003) TCGA-C8-A26Y-01 5 142513542 142513542 C T ARHGAP26 Missense_Mutation p.T570I 0.35 tolerated(0.19) possibly_damaging(0.454) TCGA-C8-A26Y-01 5 145610304 145610304 C G RBM27 Missense_Mutation p.S225C 0.24 deleterious(0) possibly_damaging(0.701) TCGA-C8-A26Y-01 5 147475426 147475426 G A SPINK5 Silent p.L280L 0.20 TCGA-C8-A26Y-01 5 148521588 148521588 G T ABLIM3 5'UTR 0.26 TCGA-C8-A26Y-01 5 148630048 148630048 C T ABLIM3 Nonsense_Mutation p.R590* 0.22 TCGA-C8-A26Y-01 5 150406533 150406533 G A GPX3 Missense_Mutation p.G105E 0.16 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 5 150901470 150901470 C G FAT2 Missense_Mutation p.D3562H 0.23 probably_damaging(1) TCGA-C8-A26Y-01 5 153409079 153409079 G C FAM114A2 Missense_Mutation p.F155L 0.15 tolerated(1) benign(0.024) TCGA-C8-A26Y-01 5 159842242 159842242 C A SLU7 Missense_Mutation p.M20I 0.44 tolerated(0.28) benign(0.001) TCGA-C8-A26Y-01 5 160973680 160973680 C A GABRB2 5'UTR 0.16 TCGA-C8-A26Y-01 5 169423141 169423141 C G DOCK2 Missense_Mutation p.F1015L 0.42 deleterious(0) probably_damaging(0.968) TCGA-C8-A26Y-01 5 177020653 177020653 C T TMED9 Silent p.V96V 0.20 TCGA-C8-A26Y-01 5 177676193 177676193 C G COL23A1 Missense_Mutation p.Q358H 0.36 tolerated(0.11) benign(0.028) TCGA-C8-A26Y-01 5 179078818 179078818 C T AC136604.1 Nonsense_Mutation p.Q101* 0.45 TCGA-C8-A26Y-01 5 179405246 179405246 C G RNF130 Missense_Mutation p.E269Q 0.36 deleterious(0) probably_damaging(0.929) TCGA-C8-A26Y-01 5 179755315 179755315 G A GFPT2 Silent p.F186F 0.18 TCGA-C8-A26Y-01 5 22078861 22078861 T G CDH12 5'UTR 0.29 TCGA-C8-A26Y-01 5 32387785 32387785 C G ZFR Missense_Mutation p.R790P 0.16 deleterious(0) unknown(0) TCGA-C8-A26Y-01 5 32789614 32789614 C A AC026703.1 Nonsense_Mutation p.S36* 0.29 TCGA-C8-A26Y-01 5 36995903 36995903 G T NIPBL Nonsense_Mutation p.E1101* 0.27 TCGA-C8-A26Y-01 5 41018851 41018851 A C MROH2B Missense_Mutation p.L872R 0.15 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 5 41313823 41313823 T A PLCXD3 Missense_Mutation p.S288C 0.15 tolerated(0.05) benign(0.006) TCGA-C8-A26Y-01 5 43298179 43298179 C G HMGCS1 Missense_Mutation p.R169T 0.09 deleterious(0) probably_damaging(0.995) TCGA-C8-A26Y-01 5 64892900 64892900 G A TRIM23 Silent p.F429F 0.16 TCGA-C8-A26Y-01 5 70808186 70808186 C G BDP1 Missense_Mutation p.S1393C 0.20 tolerated(0.16) possibly_damaging(0.54) TCGA-C8-A26Y-01 5 73148474 73148474 G C ARHGEF28 Splice_Site p.X583_splice 0.39 TCGA-C8-A26Y-01 5 76722511 76722511 G C PDE8B 3'UTR 0.45 TCGA-C8-A26Y-01 5 79027850 79027850 G A CMYA5 Missense_Mutation p.E1088K 0.19 benign(0.011) TCGA-C8-A26Y-01 5 79367940 79367940 G C THBS4 Intron 0.31 TCGA-C8-A26Y-01 6 100965943 100965943 T C ASCC3 Missense_Mutation p.I1951V 0.13 tolerated(0.48) benign(0.002) TCGA-C8-A26Y-01 6 109837846 109837846 C T AK9 Splice_Site p.X1212_splice 0.17 TCGA-C8-A26Y-01 6 11185572 11185572 G A NEDD9 Silent p.V776V 0.31 TCGA-C8-A26Y-01 6 112441587 112441587 G A LAMA4 Silent p.L1522L 0.32 TCGA-C8-A26Y-01 6 116574421 116574421 G A TSPYL4 Missense_Mutation p.P251S 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 6 123130485 123130485 A G SMPDL3A Missense_Mutation p.I432V 0.28 tolerated(0.15) benign(0.012) TCGA-C8-A26Y-01 6 131184837 131184837 C T EPB41L2 Missense_Mutation p.E951K 0.24 deleterious(0) probably_damaging(0.987) TCGA-C8-A26Y-01 6 13287299 13287299 C T TBC1D7 Intron 0.40 TCGA-C8-A26Y-01 6 136582075 136582075 C T BCLAF1 3'UTR 0.10 TCGA-C8-A26Y-01 6 144416385 144416385 C G SF3B5 Missense_Mutation p.E84Q 0.12 deleterious(0.02) benign(0.304) TCGA-C8-A26Y-01 6 144860468 144860468 C G UTRN Silent p.L2136L 0.28 TCGA-C8-A26Y-01 6 146264518 146264518 C T SHPRH Missense_Mutation p.D667N 0.30 tolerated(0.26) benign(0.012) TCGA-C8-A26Y-01 6 150071051 150071051 C T PCMT1 Missense_Mutation p.S63F 0.22 tolerated(0.08) benign(0.282) TCGA-C8-A26Y-01 6 150713638 150713638 G A IYD Silent p.L176L 0.30 TCGA-C8-A26Y-01 6 151152844 151152844 A T PLEKHG1 Missense_Mutation p.D866V 0.40 deleterious(0) possibly_damaging(0.807) TCGA-C8-A26Y-01 6 152720751 152720751 C A SYNE1 Nonsense_Mutation p.E2413* 0.24 TCGA-C8-A26Y-01 6 161139478 161139478 T G PLG Missense_Mutation p.F314V 0.07 deleterious(0.01) possibly_damaging(0.793) TCGA-C8-A26Y-01 6 161807867 161807867 C A PARK2 Nonsense_Mutation p.E376* 0.16 TCGA-C8-A26Y-01 6 165846521 165846521 C T PDE10A Missense_Mutation p.G212S 0.32 deleterious(0.01) probably_damaging(0.948) TCGA-C8-A26Y-01 6 167721350 167721350 T A UNC93A Missense_Mutation p.S354T 0.28 deleterious(0.04) benign(0.179) TCGA-C8-A26Y-01 6 168431450 168431450 C G KIF25 Intron 0.23 TCGA-C8-A26Y-01 6 24785964 24785965 AG - GMNN Frame_Shift_Del p.E190Nfs*6 0.20 TCGA-C8-A26Y-01 6 25726302 25726302 G A HIST1H2AA 3'UTR 0.40 TCGA-C8-A26Y-01 6 25726392 25726392 C G HIST1H2AA Missense_Mutation p.E122Q 0.22 tolerated_low_confidence(0.07) benign(0.005) TCGA-C8-A26Y-01 6 27107459 27107459 C T HIST1H4I 3'UTR 0.38 TCGA-C8-A26Y-01 6 28134837 28134837 G C ZNF192P1 RNA 0.32 TCGA-C8-A26Y-01 6 30632928 30632928 G A DHX16 Nonsense_Mutation p.Q349* 0.13 TCGA-C8-A26Y-01 6 31752262 31752262 C T VARS Silent p.L495L 0.28 TCGA-C8-A26Y-01 6 32049445 32049445 C G RNA5SP206 5'Flank 0.38 TCGA-C8-A26Y-01 6 33647831 33647831 A T ITPR3 Missense_Mutation p.Y1382F 0.26 tolerated(0.06) probably_damaging(0.934) TCGA-C8-A26Y-01 6 36259107 36259107 C T PNPLA1 Silent p.L72L 0.29 TCGA-C8-A26Y-01 6 38835879 38835879 G C DNAH8 Missense_Mutation p.L2028F 0.21 probably_damaging(1) TCGA-C8-A26Y-01 6 42644559 42644559 G T UBR2 Nonsense_Mutation p.E1476* 0.28 TCGA-C8-A26Y-01 6 42985434 42985434 G C KLHDC3 Splice_Site p.X111_splice 0.24 TCGA-C8-A26Y-01 6 43005599 43005599 G A CUL7 Nonsense_Mutation p.Q1726* 0.26 TCGA-C8-A26Y-01 6 43230780 43230780 G A TTBK1 Missense_Mutation p.E560K 0.31 possibly_damaging(0.776) TCGA-C8-A26Y-01 6 43417205 43417205 G C ABCC10 Missense_Mutation p.D1417H 0.22 deleterious(0) possibly_damaging(0.866) TCGA-C8-A26Y-01 6 46839704 46839704 G T GPR116 Silent p.L429L 0.29 TCGA-C8-A26Y-01 6 52615196 52615196 G A GSTA2 3'UTR 0.23 TCGA-C8-A26Y-01 6 53519444 53519444 C G KLHL31 Missense_Mutation p.M209I 0.31 tolerated(0.2) benign(0.048) TCGA-C8-A26Y-01 6 56335971 56335971 C G DST Missense_Mutation p.R4795S 0.23 probably_damaging(0.999) TCGA-C8-A26Y-01 6 56504379 56504379 C T DST Missense_Mutation p.D373N 0.21 possibly_damaging(0.904) TCGA-C8-A26Y-01 6 56989642 56989642 G A ZNF451 Silent p.K99K 0.16 TCGA-C8-A26Y-01 6 64431491 64431491 C A EYS Missense_Mutation p.M2812I 0.19 tolerated(0.16) benign(0.324) TCGA-C8-A26Y-01 6 7580286 7580286 A C DSP Missense_Mutation p.K1288T 0.35 benign(0.357) TCGA-C8-A26Y-01 6 7583116 7583116 A C DSP Missense_Mutation p.K1874T 0.20 benign(0.021) TCGA-C8-A26Y-01 6 7585120 7585120 A T DSP Missense_Mutation p.K2542M 0.20 probably_damaging(0.998) TCGA-C8-A26Y-01 6 76023499 76023499 C T FILIP1 Silent p.E683E 0.34 TCGA-C8-A26Y-01 6 80223093 80223093 C T LCA5 Missense_Mutation p.E186K 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-C8-A26Y-01 6 94066469 94066469 G C EPHA7 Silent p.L430L 0.11 TCGA-C8-A26Y-01 6 99936136 99936136 C T USP45 Missense_Mutation p.M218I 0.21 tolerated(0.47) benign(0.03) TCGA-C8-A26Y-01 7 100420101 100420101 C T EPHB4 Silent p.L200L 0.28 TCGA-C8-A26Y-01 7 100678637 100678637 G A MUC17 Missense_Mutation p.E1314K 0.23 unknown(0) TCGA-C8-A26Y-01 7 100773722 100773723 - A SERPINE1 Frame_Shift_Ins p.L98Hfs*16 0.25 TCGA-C8-A26Y-01 7 100866787 100866787 C G ZNHIT1 Missense_Mutation p.H75D 0.39 deleterious(0.03) probably_damaging(0.991) TCGA-C8-A26Y-01 7 101090960 101090963 GTTA - COL26A1 Splice_Site p.X94_splice 0.21 TCGA-C8-A26Y-01 7 102279603 102279603 T C UPK3BL Missense_Mutation p.T177A 0.08 deleterious(0) probably_damaging(0.997) TCGA-C8-A26Y-01 7 102572360 102572360 C G FBXL13 Missense_Mutation p.E249Q 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-C8-A26Y-01 7 102836043 102836043 G A DPY19L2P2 RNA 0.20 TCGA-C8-A26Y-01 7 107600963 107600963 C T LAMB1 Silent p.V747V 0.25 TCGA-C8-A26Y-01 7 107746285 107746285 C G LAMB4 Missense_Mutation p.D283H 0.23 deleterious(0) probably_damaging(0.993) TCGA-C8-A26Y-01 7 117120109 117120109 C T CFTR 5'UTR 0.16 TCGA-C8-A26Y-01 7 1197888 1197888 T A ZFAND2A 5'UTR 0.42 TCGA-C8-A26Y-01 7 119914821 119914821 G A KCND2 Silent p.L45L 0.26 TCGA-C8-A26Y-01 7 120596108 120596108 G C ING3 Intron 0.27 TCGA-C8-A26Y-01 7 128477783 128477783 G A FLNC Missense_Mutation p.E315K 0.33 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 7 128850845 128850845 G A SMO Silent p.K564K 0.27 TCGA-C8-A26Y-01 7 129666140 129666140 C G ZC3HC1 Missense_Mutation p.D212H 0.22 deleterious(0) possibly_damaging(0.897) TCGA-C8-A26Y-01 7 135310985 135310985 C G NUP205 Intron 0.35 TCGA-C8-A26Y-01 7 141673190 141673190 C T TAS2R38 Missense_Mutation p.M100I 0.34 tolerated(0.06) benign(0.035) TCGA-C8-A26Y-01 7 142625939 142625939 G A TRPV5 Silent p.L203L 0.31 TCGA-C8-A26Y-01 7 143175673 143175673 C T TAS2R41 Silent p.L236L 0.30 TCGA-C8-A26Y-01 7 148947328 148947328 C G ZNF212 Missense_Mutation p.Q35E 0.27 tolerated(1) benign(0.015) TCGA-C8-A26Y-01 7 151880189 151880189 G C KMT2C Nonsense_Mutation p.S1712* 0.31 TCGA-C8-A26Y-01 7 16650260 16650260 C T ANKMY2 Missense_Mutation p.M220I 0.26 tolerated(0.13) benign(0.003) TCGA-C8-A26Y-01 7 17378965 17378965 G A AHR Missense_Mutation p.D506N 0.16 tolerated(0.73) benign(0.002) TCGA-C8-A26Y-01 7 22852775 22852775 G T TOMM7 3'UTR 0.22 TCGA-C8-A26Y-01 7 23650865 23650865 C G CCDC126 5'UTR 0.37 TCGA-C8-A26Y-01 7 28843891 28843891 G A CREB5 Missense_Mutation p.E260K 0.45 tolerated(0.39) unknown(0) TCGA-C8-A26Y-01 7 31617842 31617842 G T CCDC129 Missense_Mutation p.D348Y 0.18 tolerated(0.05) benign(0.273) TCGA-C8-A26Y-01 7 33388754 33388754 T C BBS9 Silent p.T468T 0.13 TCGA-C8-A26Y-01 7 37262231 37262231 C A ELMO1 Nonsense_Mutation p.E257* 0.24 TCGA-C8-A26Y-01 7 40535914 40535914 T C SUGCT Missense_Mutation p.Y347H 0.16 tolerated(0.13) benign(0) TCGA-C8-A26Y-01 7 44026273 44026273 C T POLR2J4 RNA 0.17 TCGA-C8-A26Y-01 7 45108170 45108170 G A CCM2 Missense_Mutation p.E222K 0.22 tolerated(0.07) possibly_damaging(0.562) TCGA-C8-A26Y-01 7 45124055 45124055 G C NACAD Missense_Mutation p.S575C 0.29 deleterious(0.01) possibly_damaging(0.712) TCGA-C8-A26Y-01 7 6204344 6204344 C G CYTH3 3'UTR 0.21 TCGA-C8-A26Y-01 7 6204633 6204633 C G CYTH3 Missense_Mutation p.R381T 0.22 tolerated(0.11) probably_damaging(0.935) TCGA-C8-A26Y-01 7 6204915 6204915 C T CYTH3 Missense_Mutation p.M372I 0.32 tolerated(1) benign(0.002) TCGA-C8-A26Y-01 7 6204930 6204930 C T CYTH3 Silent p.E367E 0.40 TCGA-C8-A26Y-01 7 73279592 73279592 C A WBSCR28 Silent p.L114L 0.34 TCGA-C8-A26Y-01 7 75034314 75034314 G T TRIM73 Nonsense_Mutation p.E230* 0.38 TCGA-C8-A26Y-01 7 75192345 75192345 G C HIP1 Nonsense_Mutation p.S305* 0.38 TCGA-C8-A26Y-01 7 77221500 77221501 AG - PTPN12 Splice_Site p.X141_splice 0.36 TCGA-C8-A26Y-01 7 80394494 80394494 G A SEMA3C Silent p.L474L 0.22 TCGA-C8-A26Y-01 7 91714196 91714196 C T AKAP9 Missense_Mutation p.S2925L 0.32 benign(0.034) TCGA-C8-A26Y-01 7 91747923 91747923 C A CYP51A1 Missense_Mutation p.D365Y 0.16 deleterious(0) possibly_damaging(0.695) TCGA-C8-A26Y-01 7 99097527 99097527 G C ZNF394 Missense_Mutation p.R64G 0.39 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 7 99315217 99315217 C T CYP3A7 Missense_Mutation p.E122K 0.25 tolerated(0.45) benign(0.026) TCGA-C8-A26Y-01 7 99366023 99366023 C G CYP3A4 Missense_Mutation p.K208N 0.25 deleterious(0.02) benign(0.058) TCGA-C8-A26Y-01 7 99631175 99631175 G A ZKSCAN1 Silent p.E349E 0.27 TCGA-C8-A26Y-01 8 100791109 100791109 G A VPS13B Silent p.V2568V 0.25 TCGA-C8-A26Y-01 8 103307462 103307462 A T UBR5 Missense_Mutation p.I1343N 0.19 deleterious(0) probably_damaging(0.976) TCGA-C8-A26Y-01 8 110984664 110984664 T C KCNV1 Missense_Mutation p.R272G 0.12 deleterious(0) possibly_damaging(0.817) TCGA-C8-A26Y-01 8 113326143 113326143 C T CSMD3 Missense_Mutation p.R2563K 0.32 deleterious(0.01) benign(0.439) TCGA-C8-A26Y-01 8 121019105 121019105 G A DEPTOR Silent p.K329K 0.27 TCGA-C8-A26Y-01 8 124164049 124164049 C G TBC1D31 Missense_Mutation p.S1024C 0.38 deleterious(0.04) benign(0.027) TCGA-C8-A26Y-01 8 124383508 124383508 C T ATAD2 Missense_Mutation p.E203K 0.20 deleterious(0.02) benign(0.038) TCGA-C8-A26Y-01 8 125076647 125076647 C A FER1L6 Missense_Mutation p.P1130T 0.16 tolerated(0.12) benign(0.001) TCGA-C8-A26Y-01 8 125326227 125326227 C G TMEM65 Missense_Mutation p.D233H 0.42 deleterious(0.01) possibly_damaging(0.541) TCGA-C8-A26Y-01 8 12952717 12952717 C G DLC1 Missense_Mutation p.D1069H 0.30 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 8 130861491 130861491 C T FAM49B Missense_Mutation p.D280N 0.33 tolerated(0.23) benign(0.262) TCGA-C8-A26Y-01 8 133492505 133492505 G A KCNQ3 Missense_Mutation p.P92L 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-C8-A26Y-01 8 136594175 136594175 G A KHDRBS3 Silent p.T222T 0.24 TCGA-C8-A26Y-01 8 141542592 141542592 G A AGO2 Silent p.S798S 0.14 TCGA-C8-A26Y-01 8 144239845 144239845 C T LY6H Missense_Mutation p.R103Q 0.19 tolerated(0.08) possibly_damaging(0.731) TCGA-C8-A26Y-01 8 145006649 145006649 C A PLEC Silent p.L769L 0.42 TCGA-C8-A26Y-01 8 145736542 145736542 C G MFSD3 Missense_Mutation p.L412V 0.46 deleterious_low_confidence(0) benign(0.364) TCGA-C8-A26Y-01 8 145737119 145737119 C A RECQL4 Silent p.L1149L 0.25 TCGA-C8-A26Y-01 8 20107469 20107469 C G LZTS1 Missense_Mutation p.D519H 0.26 tolerated(0.06) probably_damaging(0.943) TCGA-C8-A26Y-01 8 2024237 2024237 C T MYOM2 Silent p.V379V 0.27 TCGA-C8-A26Y-01 8 26441384 26441384 C G DPYSL2 Missense_Mutation p.I66M 0.16 tolerated(0.46) benign(0.082) TCGA-C8-A26Y-01 8 27922138 27922138 C T NUGGC Silent p.V274V 0.25 TCGA-C8-A26Y-01 8 28207585 28207585 G C ZNF395 Missense_Mutation p.S441C 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-C8-A26Y-01 8 36780092 36780092 C T KCNU1 Missense_Mutation p.A894V 0.13 deleterious(0.01) benign(0.231) TCGA-C8-A26Y-01 8 42823256 42823256 G C HOOK3 Missense_Mutation p.E341Q 0.32 tolerated(0.23) possibly_damaging(0.843) TCGA-C8-A26Y-01 8 43152473 43152473 A G POTEA RNA 0.16 TCGA-C8-A26Y-01 8 52252213 52252213 G A PXDNL Nonsense_Mutation p.Q1373* 0.32 TCGA-C8-A26Y-01 8 56668876 56668876 G T TMEM68 Missense_Mutation p.F140L 0.14 tolerated(0.07) benign(0.221) TCGA-C8-A26Y-01 8 67062075 67062075 C T TRIM55 Nonsense_Mutation p.Q267* 0.19 TCGA-C8-A26Y-01 8 68028194 68028194 G C CSPP1 Missense_Mutation p.E440Q 0.45 tolerated(0.1) possibly_damaging(0.821) TCGA-C8-A26Y-01 8 70570783 70570783 C T SULF1 3'UTR 0.20 TCGA-C8-A26Y-01 8 86027725 86027725 C T LRRCC1 Missense_Mutation p.S279F 0.17 deleterious(0) possibly_damaging(0.873) TCGA-C8-A26Y-01 8 89339531 89339531 C A MMP16 5'UTR 0.27 TCGA-C8-A26Y-01 8 90802357 90802357 G C RIPK2 Missense_Mutation p.D446H 0.16 deleterious(0) probably_damaging(0.933) TCGA-C8-A26Y-01 8 95654199 95654199 G A ESRP1 Missense_Mutation p.E50K 0.47 tolerated(0.61) benign(0.004) TCGA-C8-A26Y-01 8 95886801 95886803 TGT - INTS8 In_Frame_Del p.C888del 0.17 TCGA-C8-A26Y-01 8 97244114 97244114 C T UQCRB Missense_Mutation p.R49K 0.45 tolerated(0.22) benign(0.313) TCGA-C8-A26Y-01 8 99129340 99129340 C G HRSP12 5'UTR 0.29 TCGA-C8-A26Y-01 9 101065570 101065570 C G GABBR2 Missense_Mutation p.E789Q 0.27 tolerated(0.24) benign(0.004) TCGA-C8-A26Y-01 9 104170663 104170663 G A ZNF189 Missense_Mutation p.E205K 0.28 tolerated(0.4) benign(0.071) TCGA-C8-A26Y-01 9 104187272 104187272 G A ALDOB Silent p.L284L 0.22 TCGA-C8-A26Y-01 9 107298627 107298627 G T OR13C3 Silent p.I156I 0.29 TCGA-C8-A26Y-01 9 108297397 108297397 G C FSD1L Missense_Mutation p.Q392H 0.34 tolerated(0.13) probably_damaging(0.974) TCGA-C8-A26Y-01 9 113457776 113457776 C G MUSK Nonsense_Mutation p.S151* 0.30 TCGA-C8-A26Y-01 9 121930379 121930379 C T BRINP1 Silent p.Q423Q 0.38 TCGA-C8-A26Y-01 9 125551554 125551554 G T OR5C1 Nonsense_Mutation p.E115* 0.14 TCGA-C8-A26Y-01 9 128347849 128347850 - GTCCTT MAPKAP1 In_Frame_Ins p.G218_R219insQG 0.42 TCGA-C8-A26Y-01 9 131095838 131095838 G A COQ4 Missense_Mutation p.E238K 0.36 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 9 131493513 131493514 CC - ZER1 3'UTR 0.26 TCGA-C8-A26Y-01 9 131566358 131566358 C T TBC1D13 Missense_Mutation p.S293F 0.24 tolerated(0.1) benign(0.057) TCGA-C8-A26Y-01 9 132566431 132566431 C T TOR1B Silent p.F93F 0.34 TCGA-C8-A26Y-01 9 134463211 134463211 C T RAPGEF1 Missense_Mutation p.E881K 0.34 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 9 136216282 136216282 G A RPL7A Intron 0.42 TCGA-C8-A26Y-01 9 136262418 136262418 T A C9orf96 Missense_Mutation p.L332I 0.50 tolerated(0.08) possibly_damaging(0.589) TCGA-C8-A26Y-01 9 137321070 137321070 G T RXRA Missense_Mutation p.G343C 0.25 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 9 139272064 139272064 G C SNAPC4 Silent p.L1405L 0.20 TCGA-C8-A26Y-01 9 140056490 140056490 G A GRIN1 Missense_Mutation p.E549K 0.26 deleterious(0) possibly_damaging(0.453) TCGA-C8-A26Y-01 9 140083571 140083571 G C SSNA1 Missense_Mutation p.E36Q 0.45 tolerated(0.1) possibly_damaging(0.672) TCGA-C8-A26Y-01 9 14868860 14868860 G C FREM1 Missense_Mutation p.S39C 0.39 deleterious(0) probably_damaging(0.971) TCGA-C8-A26Y-01 9 2088583 2088583 G C SMARCA2 Missense_Mutation p.K951N 0.43 possibly_damaging(0.728) TCGA-C8-A26Y-01 9 21367943 21367943 G C IFNA13 Missense_Mutation p.L23V 0.44 deleterious(0) possibly_damaging(0.899) TCGA-C8-A26Y-01 9 35095226 35095226 T C PIGO Missense_Mutation p.I113V 0.25 tolerated(0.23) benign(0.001) TCGA-C8-A26Y-01 9 5044465 5044465 G C JAK2 Missense_Mutation p.R138P 0.48 deleterious(0) possibly_damaging(0.7) TCGA-C8-A26Y-01 9 71687744 71687744 G A FXN 3'UTR 0.31 TCGA-C8-A26Y-01 9 71990715 71990715 G C FAM189A2 Missense_Mutation p.D63H 0.13 deleterious(0) probably_damaging(0.964) TCGA-C8-A26Y-01 9 72912969 72912969 G A SMC5 Missense_Mutation p.E381K 0.17 tolerated(0.07) benign(0.395) TCGA-C8-A26Y-01 9 79267494 79267494 G C PRUNE2 Missense_Mutation p.S2821C 0.28 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 9 79324579 79324579 C A PRUNE2 Missense_Mutation p.D871Y 0.29 tolerated(0.29) benign(0.107) TCGA-C8-A26Y-01 9 79792482 79792482 C G VPS13A 5'UTR 0.30 TCGA-C8-A26Y-01 9 80262731 80262731 G C GNA14 5'UTR 0.25 TCGA-C8-A26Y-01 9 86457233 86457233 T G KIF27 Missense_Mutation p.K1214Q 0.24 deleterious(0.01) probably_damaging(1) TCGA-C8-A26Y-01 9 86485437 86485437 G C KIF27 Silent p.L918L 0.22 TCGA-C8-A26Y-01 9 86504117 86504117 G A KIF27 Nonsense_Mutation p.R621* 0.34 TCGA-C8-A26Y-01 9 95009730 95009730 C G IARS Missense_Mutation p.G907A 0.21 tolerated(0.1) benign(0.033) TCGA-C8-A26Y-01 9 95610506 95610506 A G ZNF484 Missense_Mutation p.I190T 0.25 tolerated(0.42) benign(0.005) TCGA-C8-A26Y-01 9 97081129 97081129 G A NUTM2F Missense_Mutation p.S630L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A26Y-01 X 100538494 100538494 C G TAF7L Missense_Mutation p.E161Q 0.35 deleterious(0.04) possibly_damaging(0.876) TCGA-C8-A26Y-01 X 102192435 102192435 G C RAB40AL Silent p.V63V 0.08 TCGA-C8-A26Y-01 X 103349911 103349911 C T SLC25A53 Silent p.K10K 0.08 TCGA-C8-A26Y-01 X 107167684 107167684 T G MID2 Missense_Mutation p.I516R 0.17 tolerated(0.13) probably_damaging(0.984) TCGA-C8-A26Y-01 X 107844620 107844620 C G COL4A5 Intron 0.28 TCGA-C8-A26Y-01 X 110491214 110491214 C T CAPN6 Silent p.L497L 0.18 TCGA-C8-A26Y-01 X 110494949 110494949 C T CAPN6 Missense_Mutation p.E241K 0.24 deleterious(0) possibly_damaging(0.874) TCGA-C8-A26Y-01 X 111155634 111155634 G A TRPC5 Missense_Mutation p.S262F 0.23 deleterious(0) probably_damaging(0.99) TCGA-C8-A26Y-01 X 117570782 117570782 C G WDR44 Missense_Mutation p.P657A 0.27 deleterious(0.01) probably_damaging(1) TCGA-C8-A26Y-01 X 120009245 120009245 C T CT47B1 Missense_Mutation p.E94K 0.43 tolerated(0.11) probably_damaging(0.981) TCGA-C8-A26Y-01 X 122598859 122598859 G A GRIA3 Missense_Mutation p.M740I 0.29 deleterious(0.01) probably_damaging(0.911) TCGA-C8-A26Y-01 X 128605204 128605204 C G SMARCA1 Missense_Mutation p.E848Q 0.23 tolerated(0.09) benign(0.186) TCGA-C8-A26Y-01 X 129146580 129146580 C G BCORL1 Nonsense_Mutation p.S38* 0.31 TCGA-C8-A26Y-01 X 129629081 129629081 G C RP1-274L7.1 Intron 0.24 TCGA-C8-A26Y-01 X 130678345 130678345 C G OR13H1 Missense_Mutation p.Q100E 0.12 deleterious(0.03) benign(0.302) TCGA-C8-A26Y-01 X 131516235 131516235 G T MBNL3 Missense_Mutation p.P342T 0.27 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Y-01 X 134155864 134155864 G A FAM127C 3'UTR 0.12 TCGA-C8-A26Y-01 X 134427658 134427658 C A ZNF75D Nonsense_Mutation p.E137* 0.28 TCGA-C8-A26Y-01 X 134686019 134686019 C T DDX26B Missense_Mutation p.S336L 0.32 deleterious(0.04) possibly_damaging(0.558) TCGA-C8-A26Y-01 X 134993410 134993410 G C SAGE1 Missense_Mutation p.D689H 0.32 deleterious(0.04) benign(0.426) TCGA-C8-A26Y-01 X 135055869 135055869 G A MMGT1 5'UTR 0.31 TCGA-C8-A26Y-01 X 13587942 13587942 G A EGFL6 5'UTR 0.15 TCGA-C8-A26Y-01 X 13764545 13764545 G C OFD1 Missense_Mutation p.E209Q 0.30 tolerated(1) benign(0.012) TCGA-C8-A26Y-01 X 148055004 148055004 G C AFF2 Missense_Mutation p.E1091Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-C8-A26Y-01 X 148586602 148586602 G A IDS Silent p.V22V 0.22 TCGA-C8-A26Y-01 X 148798335 148798335 A T MAGEA11 Missense_Mutation p.M397L 0.17 deleterious(0.05) benign(0.401) TCGA-C8-A26Y-01 X 149013455 149013455 G A MAGEA8 Missense_Mutation p.E137K 0.18 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 X 151935048 151935048 C A MAGEA3 3'UTR 0.24 TCGA-C8-A26Y-01 X 1522067 1522067 C T ASMTL 3'UTR 0.17 TCGA-C8-A26Y-01 X 153128186 153128186 C T L1CAM Missense_Mutation p.E1236K 0.31 deleterious(0.05) possibly_damaging(0.455) TCGA-C8-A26Y-01 X 155239804 155239804 C G IL9R Missense_Mutation p.S432R 0.15 tolerated_low_confidence(0.09) possibly_damaging(0.883) TCGA-C8-A26Y-01 X 17040392 17040392 C T REPS2 Nonsense_Mutation p.Q182* 0.24 TCGA-C8-A26Y-01 X 17763573 17763573 C A SCML1 Intron 0.19 TCGA-C8-A26Y-01 X 23410824 23410824 G A PTCHD1 Missense_Mutation p.E397K 0.27 tolerated(0.06) probably_damaging(0.996) TCGA-C8-A26Y-01 X 26212603 26212603 G C MAGEB6 Missense_Mutation p.E214Q 0.33 tolerated(0.11) probably_damaging(0.992) TCGA-C8-A26Y-01 X 3248093 3248093 C A MXRA5 Missense_Mutation p.M225I 0.12 deleterious(0.04) benign(0.011) TCGA-C8-A26Y-01 X 41047365 41047365 G C USP9X Missense_Mutation p.E1269Q 0.26 tolerated(0.06) benign(0.001) TCGA-C8-A26Y-01 X 41206702 41206702 G A DDX3X Missense_Mutation p.G636E 0.21 tolerated(0.09) unknown(0) TCGA-C8-A26Y-01 X 41390311 41390311 G C CASK Missense_Mutation p.I818M 0.37 deleterious(0) probably_damaging(1) TCGA-C8-A26Y-01 X 44922731 44922731 C T KDM6A Missense_Mutation p.S531L 0.19 deleterious(0) benign(0.175) TCGA-C8-A26Y-01 X 45606466 45606466 G A MIR222 RNA 0.42 TCGA-C8-A26Y-01 X 47498367 47498367 G A ELK1 Missense_Mutation p.S194L 0.32 tolerated(0.22) benign(0.071) TCGA-C8-A26Y-01 X 53457954 53457954 C G RIBC1 3'UTR 0.41 TCGA-C8-A26Y-01 X 63412320 63412320 C G AMER1 Missense_Mutation p.E283Q 0.29 tolerated(0.1) benign(0.291) TCGA-C8-A26Y-01 X 6451941 6451941 G A VCX3A Nonsense_Mutation p.Q136* 0.06 TCGA-C8-A26Y-01 X 67944320 67944320 G A STARD8 3'UTR 0.41 TCGA-C8-A26Y-01 X 69898656 69898656 C T TEX11 Missense_Mutation p.E429K 0.17 tolerated(0.16) benign(0.129) TCGA-C8-A26Y-01 X 70147654 70147654 G C SLC7A3 Missense_Mutation p.S346C 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-C8-A26Y-01 X 70316624 70316624 C T FOXO4 Silent p.P82P 0.45 TCGA-C8-A26Y-01 X 70340925 70340925 G A MED12 Missense_Mutation p.G220R 0.27 benign(0.171) TCGA-C8-A26Y-01 X 70389243 70389243 C G NLGN3 Missense_Mutation p.H615D 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-C8-A26Y-01 X 7223129 7223129 A T STS Missense_Mutation p.D334V 0.18 deleterious(0.02) benign(0.052) TCGA-C8-A26Y-01 X 8763373 8763373 C A FAM9A Nonsense_Mutation p.E193* 0.37 TCGA-C8-A26Y-01 X 90691255 90691255 A G PABPC5 Missense_Mutation p.S227G 0.31 deleterious(0) probably_damaging(0.968) TCGA-C8-A26Y-01 X 91642764 91642764 G C PCDH11X Missense_Mutation p.E1059Q 0.30 tolerated(0.29) possibly_damaging(0.782) TCGA-C8-A26Z-01 10 118969342 118969342 G T KCNK18 Missense_Mutation p.E229D 0.33 tolerated(0.05) possibly_damaging(0.468) TCGA-C8-A26Z-01 10 24813260 24813260 C T KIAA1217 Missense_Mutation p.T822I 0.20 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Z-01 10 38121863 38121863 A C ZNF248 Missense_Mutation p.C140W 0.63 deleterious(0) probably_damaging(0.997) TCGA-C8-A26Z-01 11 34162068 34162068 C G NAT10 Silent p.R847R 0.08 TCGA-C8-A26Z-01 11 45926335 45926335 G A MAPK8IP1 Missense_Mutation p.V615M 0.08 tolerated(0.18) benign(0.076) TCGA-C8-A26Z-01 12 22063221 22063221 C G ABCC9 Missense_Mutation p.R397T 0.47 deleterious(0) possibly_damaging(0.508) TCGA-C8-A26Z-01 12 27533206 27533206 G A ARNTL2 Missense_Mutation p.R118Q 0.19 deleterious(0) probably_damaging(0.979) TCGA-C8-A26Z-01 12 71016202 71016202 T C PTPRB Missense_Mutation p.T226A 0.16 deleterious_low_confidence(0.04) benign(0.019) TCGA-C8-A26Z-01 13 96412387 96412387 G A DNAJC3 Missense_Mutation p.A214T 0.25 tolerated(0.93) benign(0.011) TCGA-C8-A26Z-01 14 102916920 102916920 C - TECPR2 Frame_Shift_Del p.R1115Vfs*99 0.38 TCGA-C8-A26Z-01 14 107199193 107199193 C G IGHV3-72 Missense_Mutation p.Q32H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.458) TCGA-C8-A26Z-01 14 23521744 23521744 G T CDH24 Missense_Mutation p.A434E 0.21 tolerated(0.25) possibly_damaging(0.486) TCGA-C8-A26Z-01 15 43816672 43816672 G T MAP1A Missense_Mutation p.G1001C 0.21 probably_damaging(1) TCGA-C8-A26Z-01 16 46694483 46694484 CT - VPS35 Frame_Shift_Del p.E764Afs*3 0.23 TCGA-C8-A26Z-01 17 61987302 61987302 C T CSHL1 Intron 0.26 TCGA-C8-A26Z-01 19 35610312 35610312 T G FXYD3 Missense_Mutation p.F68C 0.20 deleterious(0.01) possibly_damaging(0.892) TCGA-C8-A26Z-01 19 50315962 50315962 C T FUZ Missense_Mutation p.G48E 0.17 deleterious(0) probably_damaging(0.998) TCGA-C8-A26Z-01 19 53208071 53208071 G T ZNF611 3'UTR 0.24 TCGA-C8-A26Z-01 1 115223011 115223011 G A AMPD1 Silent p.D245D 0.28 TCGA-C8-A26Z-01 1 154988824 154988824 G A ZBTB7B Missense_Mutation p.R462Q 0.19 deleterious(0) probably_damaging(0.947) TCGA-C8-A26Z-01 1 158687491 158687491 G A OR6K3 Missense_Mutation p.R139W 0.14 deleterious(0.04) benign(0.052) TCGA-C8-A26Z-01 1 220439846 220439846 C A RAB3GAP2 Intron 0.21 TCGA-C8-A26Z-01 1 224377282 224377282 A G DEGS1 Missense_Mutation p.K29R 0.14 deleterious(0.03) possibly_damaging(0.582) TCGA-C8-A26Z-01 1 33402866 33402866 G A RNF19B Intron 0.52 TCGA-C8-A26Z-01 1 36358211 36358211 G A AGO1 Missense_Mutation p.R88H 0.16 tolerated(0.06) benign(0.41) TCGA-C8-A26Z-01 1 46659357 46659357 C T POMGNT1 Intron 0.33 TCGA-C8-A26Z-01 1 87207920 87207920 A G SH3GLB1 Missense_Mutation p.N285S 0.79 tolerated(0.88) benign(0.121) TCGA-C8-A26Z-01 20 19665914 19665915 AG - SLC24A3 Frame_Shift_Del p.N413* 0.17 TCGA-C8-A26Z-01 20 48257168 48257168 A G B4GALT5 Missense_Mutation p.F214S 0.13 deleterious(0) possibly_damaging(0.901) TCGA-C8-A26Z-01 21 31869332 31869332 G A KRTAP19-4 Missense_Mutation p.R33C 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-C8-A26Z-01 2 168108454 168108454 A T XIRP2 Missense_Mutation p.S3518C 0.42 probably_damaging(0.937) TCGA-C8-A26Z-01 2 73659408 73659408 A C ALMS1 Missense_Mutation p.H474P 0.18 probably_damaging(0.958) TCGA-C8-A26Z-01 4 147561516 147561516 C T POU4F2 Silent p.A262A 0.44 TCGA-C8-A26Z-01 4 71232791 71232791 T G SMR3A 3'UTR 0.12 TCGA-C8-A26Z-01 5 171766138 171766138 G A SH3PXD2B Silent p.G657G 0.43 TCGA-C8-A26Z-01 6 45399750 45399750 G T RUNX2 Nonsense_Mutation p.G192* 0.24 TCGA-C8-A26Z-01 6 76412369 76412369 G A SENP6 Nonsense_Mutation p.W766* 0.54 TCGA-C8-A26Z-01 7 100349543 100349543 C T ZAN Silent p.P605P 0.19 TCGA-C8-A26Z-01 7 138593769 138593769 G A KIAA1549 Missense_Mutation p.H1082Y 0.20 deleterious(0.02) probably_damaging(0.93) TCGA-C8-A26Z-01 7 89866283 89866283 C T STEAP2 3'UTR 0.14 TCGA-C8-A26Z-01 7 99802723 99802723 C T STAG3 Missense_Mutation p.S1016F 0.18 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Z-01 8 132962331 132962331 G A EFR3A Missense_Mutation p.R161Q 0.21 tolerated(0.1) benign(0.077) TCGA-C8-A26Z-01 8 139165210 139165210 G A FAM135B Missense_Mutation p.S503L 0.21 tolerated(0.17) benign(0) TCGA-C8-A26Z-01 8 30694937 30694937 G C TEX15 Missense_Mutation p.Q2572E 0.14 tolerated(0.11) benign(0.018) TCGA-C8-A26Z-01 8 55537775 55537775 C T RP1 Missense_Mutation p.R445C 0.27 deleterious(0) possibly_damaging(0.719) TCGA-C8-A26Z-01 8 95502298 95502298 C T KIAA1429 Missense_Mutation p.R1718H 0.20 deleterious(0) probably_damaging(0.999) TCGA-C8-A26Z-01 9 5968121 5968121 G A KIAA2026 Missense_Mutation p.R704C 0.17 tolerated(0.07) benign(0.009) TCGA-C8-A26Z-01 9 8636826 8636826 C T PTPRD Missense_Mutation p.R28Q 0.08 tolerated(0.13) probably_damaging(0.974) TCGA-C8-A26Z-01 X 100183473 100183473 G C XKRX 5'UTR 0.27 TCGA-C8-A26Z-01 X 136651211 136651211 G A ZIC3 Missense_Mutation p.R404H 0.18 deleterious(0) probably_damaging(0.996) TCGA-C8-A26Z-01 X 140984435 140984435 C A MAGEC3 Intron 0.14 TCGA-C8-A26Z-01 X 48385405 48385405 A T EBP Silent p.R110R 0.52 TCGA-C8-A273-01 10 70231706 70231706 G A DNA2 Silent p.R58R 0.33 TCGA-C8-A273-01 10 8111513 8111514 - G GATA3 Frame_Shift_Ins p.D336Gfs*17 0.27 TCGA-C8-A273-01 11 56058034 56058034 C T OR8H1 Missense_Mutation p.D169N 0.34 tolerated(1) benign(0.013) TCGA-C8-A273-01 11 66191476 66191476 G A NPAS4 Missense_Mutation p.S372N 0.35 deleterious(0.04) benign(0.063) TCGA-C8-A273-01 11 70007819 70007819 C T ANO1 Silent p.Y624Y 0.32 TCGA-C8-A273-01 12 132562209 132562209 G A EP400 Silent p.P3121P 0.32 TCGA-C8-A273-01 12 56992346 56992346 T G BAZ2A 3'UTR 0.59 TCGA-C8-A273-01 12 88496844 88496844 C T CEP290 Intron 0.68 TCGA-C8-A273-01 14 91077095 91077095 G T TTC7B Missense_Mutation p.P653T 0.29 tolerated(0.39) possibly_damaging(0.548) TCGA-C8-A273-01 16 28843885 28843899 AAAGGTGAGGGTGGT GAAGGGGGGGGGGGG ATXN2L Splice_Site p.X528_splice 0.12 TCGA-C8-A273-01 17 48703503 48703503 C G CACNA1G Silent p.T2175T 0.47 TCGA-C8-A273-01 17 48703604 48703604 C T CACNA1G Missense_Mutation p.P2209L 0.40 tolerated_low_confidence(0.3) benign(0) TCGA-C8-A273-01 17 48703846 48703846 C G CACNA1G Missense_Mutation p.L2290V 0.57 tolerated_low_confidence(0.7) benign(0.066) TCGA-C8-A273-01 17 59668404 59668404 G A NACA2 Silent p.T46T 0.11 TCGA-C8-A273-01 19 55898460 55898460 T G RPL28 Intron 0.41 TCGA-C8-A273-01 1 166039779 166039779 C A FAM78B Missense_Mutation p.R162I 0.18 tolerated(0.27) possibly_damaging(0.466) TCGA-C8-A273-01 20 1551639 1551639 G A SIRPB1 Missense_Mutation p.S299L 0.36 tolerated(0.51) benign(0.006) TCGA-C8-A273-01 20 19662508 19662508 C T SLC24A3 Silent p.N258N 0.37 TCGA-C8-A273-01 22 39357391 39357391 G A APOBEC3A Splice_Site p.X59_splice 0.48 TCGA-C8-A273-01 2 165952146 165952146 G A SCN3A Missense_Mutation p.P1436S 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-C8-A273-01 2 31562462 31562462 G A XDH Missense_Mutation p.R1223C 0.36 deleterious(0.01) benign(0.413) TCGA-C8-A273-01 5 140530373 140530373 G A PCDHB6 Missense_Mutation p.V179I 0.31 tolerated(0.42) benign(0.019) TCGA-C8-A273-01 5 177474205 177474205 G A FAM153C Intron 0.40 TCGA-C8-A273-01 5 178418554 178418555 - C GRM6 Frame_Shift_Ins p.V243Gfs*40 0.27 TCGA-C8-A273-01 6 33269428 33269428 G C TAPBP 3'Flank 0.33 TCGA-C8-A273-01 7 138968233 138968233 C A UBN2 Missense_Mutation p.S861Y 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-C8-A273-01 7 150027933 150027933 A G ZBED6CL Missense_Mutation p.Q147R 0.24 tolerated(0.67) benign(0.004) TCGA-C8-A274-01 10 105218554 105218554 C G CALHM1 5'UTR 0.41 TCGA-C8-A274-01 10 105812868 105812868 C A COL17A1 Missense_Mutation p.M620I 0.33 unknown(0) TCGA-C8-A274-01 10 115614776 115614776 G C NHLRC2 Missense_Mutation p.E49Q 0.15 tolerated(0.22) benign(0.006) TCGA-C8-A274-01 10 122633359 122633359 A G WDR11 Missense_Mutation p.N494D 0.15 tolerated(0.19) benign(0.017) TCGA-C8-A274-01 10 17747604 17747604 C A STAM Nonsense_Mutation p.S358* 0.05 TCGA-C8-A274-01 10 21784544 21784544 G T CASC10 Missense_Mutation p.F132L 0.26 deleterious_low_confidence(0) benign(0.294) TCGA-C8-A274-01 10 22606826 22606826 G A COMMD3 Silent p.L51L 0.20 TCGA-C8-A274-01 10 24874506 24874506 G A ARHGAP21 Missense_Mutation p.T1571M 0.08 tolerated(0.42) benign(0.006) TCGA-C8-A274-01 10 3191919 3191919 C T PITRM1 Missense_Mutation p.A589T 0.28 tolerated(0.52) benign(0.009) TCGA-C8-A274-01 10 375423 375423 C T DIP2C Missense_Mutation p.V1235M 0.25 deleterious(0) probably_damaging(0.973) TCGA-C8-A274-01 10 49931543 49931543 C T WDFY4 Silent p.F174F 0.36 TCGA-C8-A274-01 10 5541299 5541299 C T CALML5 Missense_Mutation p.A35T 0.45 tolerated(1) benign(0.041) TCGA-C8-A274-01 10 5799561 5799561 C G FAM208B Missense_Mutation p.H2271D 0.21 tolerated(0.73) benign(0.001) TCGA-C8-A274-01 10 75006522 75006522 C T DNAJC9 Missense_Mutation p.G82E 0.23 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 10 75035266 75035266 G C TTC18 Missense_Mutation p.L941V 0.16 deleterious(0.04) probably_damaging(0.978) TCGA-C8-A274-01 10 79745887 79745887 C T POLR3A Missense_Mutation p.E978K 0.04 tolerated(0.52) benign(0.01) TCGA-C8-A274-01 10 88994698 88994698 C T NUTM2A 3'UTR 0.21 TCGA-C8-A274-01 10 91503681 91503681 C G KIF20B Silent p.L1304L 0.13 TCGA-C8-A274-01 11 100095465 100095465 G A CNTN5 Silent p.L642L 0.29 TCGA-C8-A274-01 11 116661095 116661095 G T APOA5 Silent p.R284R 0.16 TCGA-C8-A274-01 11 129728698 129728698 C T TMEM45B 3'UTR 0.55 TCGA-C8-A274-01 11 130340885 130340885 C T ADAMTS15 Silent p.L597L 0.19 TCGA-C8-A274-01 11 14486547 14486547 G A COPB1 Missense_Mutation p.P774S 0.23 tolerated(0.55) benign(0.1) TCGA-C8-A274-01 11 4470867 4470867 C G OR52K2 Missense_Mutation p.L100V 0.29 tolerated(0.09) probably_damaging(0.997) TCGA-C8-A274-01 11 47345270 47345270 G C MADD Missense_Mutation p.E1476Q 0.23 deleterious(0.02) possibly_damaging(0.864) TCGA-C8-A274-01 11 68380660 68380660 G T PPP6R3 3'UTR 0.30 TCGA-C8-A274-01 11 70202291 70202291 C T PPFIA1 Missense_Mutation p.S838L 0.16 tolerated(0.27) benign(0.016) TCGA-C8-A274-01 11 71821343 71821344 - CT LRTOMT 3'UTR 0.28 TCGA-C8-A274-01 11 76370630 76370630 G C LRRC32 3'UTR 0.31 TCGA-C8-A274-01 11 9043489 9043489 T A SCUBE2 Missense_Mutation p.E899D 0.23 tolerated(0.13) possibly_damaging(0.689) TCGA-C8-A274-01 12 124189191 124189191 G A TCTN2 Silent p.A575A 0.26 TCGA-C8-A274-01 12 13233579 13233579 C T KIAA1467 3'UTR 0.28 TCGA-C8-A274-01 12 21711185 21711185 G A GYS2 Silent p.L457L 0.06 TCGA-C8-A274-01 12 31632974 31632974 A G DENND5B Silent p.S151S 0.40 TCGA-C8-A274-01 12 45686579 45686579 C G ANO6 Intron 0.29 TCGA-C8-A274-01 12 52962061 52962061 T A KRT74 Missense_Mutation p.E416V 0.23 deleterious(0) probably_damaging(0.988) TCGA-C8-A274-01 12 53854811 53854811 C G PCBP2 Missense_Mutation p.Q130E 0.05 deleterious(0.02) benign(0.426) TCGA-C8-A274-01 12 6443376 6443376 G A TNFRSF1A Missense_Mutation p.S25L 0.32 tolerated(0.36) benign(0.012) TCGA-C8-A274-01 12 7043656 7043656 C T ATN1 Missense_Mutation p.P65L 0.48 possibly_damaging(0.475) TCGA-C8-A274-01 12 72288506 72288506 T A TBC1D15 Missense_Mutation p.F250Y 0.25 deleterious(0.01) benign(0.05) TCGA-C8-A274-01 12 90004995 90004995 C T ATP2B1 Missense_Mutation p.R741K 0.07 tolerated(0.15) benign(0.108) TCGA-C8-A274-01 13 102029101 102029101 C T NALCN Silent p.Q198Q 0.45 TCGA-C8-A274-01 13 111955406 111955406 G A ARHGEF7 Silent p.V629V 0.41 TCGA-C8-A274-01 13 50587116 50587116 G A TRIM13 Nonsense_Mutation p.W350* 0.41 TCGA-C8-A274-01 13 97639938 97639938 C T OXGR1 Missense_Mutation p.D26N 0.06 tolerated(0.17) benign(0.03) TCGA-C8-A274-01 14 103355969 103355969 C T TRAF3 Nonsense_Mutation p.Q242* 0.27 TCGA-C8-A274-01 14 103363658 103363658 C T TRAF3 Nonsense_Mutation p.Q294* 0.13 TCGA-C8-A274-01 14 103369681 103369684 GAAG AAAAA TRAF3 Frame_Shift_Ins p.M350Ifs*40 0.22 TCGA-C8-A274-01 14 104028413 104028413 C T BAG5 5'UTR 0.30 TCGA-C8-A274-01 14 21868712 21868712 C T CHD8 Missense_Mutation p.R1477Q 0.20 tolerated(0.55) possibly_damaging(0.46) TCGA-C8-A274-01 14 23355290 23355290 A C REM2 Missense_Mutation p.I193L 0.12 tolerated(0.41) benign(0.071) TCGA-C8-A274-01 14 23885225 23885225 C T MYH7 Silent p.Q1647Q 0.26 TCGA-C8-A274-01 14 24586891 24586891 C T DCAF11 Silent p.L142L 0.34 TCGA-C8-A274-01 14 24587304 24587304 C T DCAF11 Nonsense_Mutation p.Q173* 0.24 TCGA-C8-A274-01 14 24659852 24659852 G A TM9SF1 Silent p.F387F 0.23 TCGA-C8-A274-01 14 31344043 31344043 G T COCH Intron 0.42 TCGA-C8-A274-01 14 31604763 31604763 C T HECTD1 Missense_Mutation p.R1058K 0.24 tolerated(1) benign(0.018) TCGA-C8-A274-01 14 35577342 35577342 C T PPP2R3C Intron 0.28 TCGA-C8-A274-01 14 50251346 50251346 C T NEMF 3'UTR 0.28 TCGA-C8-A274-01 14 50266226 50266227 TG - NEMF Frame_Shift_Del p.Q811Efs*21 0.09 TCGA-C8-A274-01 14 58063474 58063474 C T SLC35F4 Missense_Mutation p.E48K 0.21 tolerated_low_confidence(0.34) benign(0) TCGA-C8-A274-01 14 59112495 59112495 C T DACT1 Missense_Mutation p.S385L 0.21 tolerated(0.19) benign(0.013) TCGA-C8-A274-01 14 63174898 63174898 C A KCNH5 Silent p.L765L 0.19 TCGA-C8-A274-01 14 63757697 63757697 G C RHOJ Missense_Mutation p.K200N 0.28 tolerated(0.1) benign(0.078) TCGA-C8-A274-01 14 64496652 64496652 G A SYNE2 Missense_Mutation p.D2252N 0.18 benign(0.117) TCGA-C8-A274-01 14 64595260 64595260 G C SYNE2 Missense_Mutation p.E4670Q 0.16 possibly_damaging(0.756) TCGA-C8-A274-01 14 64879239 64879239 C G MTHFD1 Missense_Mutation p.S79C 0.23 tolerated(0.07) benign(0.225) TCGA-C8-A274-01 15 27160004 27160004 G A GABRA5 Silent p.A184A 0.46 TCGA-C8-A274-01 15 48737603 48737603 C T FBN1 Missense_Mutation p.E1963K 0.10 benign(0.114) TCGA-C8-A274-01 15 64385865 64385865 C G FAM96A Missense_Mutation p.E35Q 0.48 tolerated(0.08) benign(0.1) TCGA-C8-A274-01 15 77406456 77406456 G A PEAK1 3'UTR 0.27 TCGA-C8-A274-01 16 20748324 20748324 C T THUMPD1 Missense_Mutation p.E314K 0.04 tolerated(0.13) benign(0.004) TCGA-C8-A274-01 16 23690577 23690577 C G PLK1 Silent p.L108L 0.28 TCGA-C8-A274-01 16 24104239 24104239 C G PRKCB Silent p.L219L 0.19 TCGA-C8-A274-01 16 27499930 27499930 G C GTF3C1 Silent p.L1152L 0.17 TCGA-C8-A274-01 16 28992923 28992923 G T SPNS1 Missense_Mutation p.A266S 0.23 tolerated(0.5) benign(0.034) TCGA-C8-A274-01 16 30735726 30735726 C G SRCAP Missense_Mutation p.Q1661E 0.25 possibly_damaging(0.585) TCGA-C8-A274-01 16 61935368 61935368 C T CDH8 Missense_Mutation p.D88N 0.42 tolerated(0.18) benign(0.442) TCGA-C8-A274-01 16 68856067 68856068 - T CDH1 Frame_Shift_Ins p.T627Hfs*36 0.61 TCGA-C8-A274-01 17 11684424 11684424 G A DNAH9 Missense_Mutation p.E2551K 0.09 benign(0.217) TCGA-C8-A274-01 17 36719665 36719665 G C SRCIN1 Missense_Mutation p.H212D 0.35 tolerated(0.3) probably_damaging(0.999) TCGA-C8-A274-01 17 37880257 37880257 C G ERBB2 Missense_Mutation p.I767M 0.33 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 17 40556903 40556903 G C PTRF Silent p.V325V 0.29 TCGA-C8-A274-01 17 56272352 56272352 C T EPX Missense_Mutation p.R208C 0.31 tolerated(0.06) probably_damaging(0.993) TCGA-C8-A274-01 17 57697514 57697514 C T CLTC Missense_Mutation p.R8C 0.16 deleterious(0.01) possibly_damaging(0.604) TCGA-C8-A274-01 17 64685156 64685156 G - PRKCA Frame_Shift_Del p.K304Nfs*31 0.24 TCGA-C8-A274-01 17 67286128 67286128 C T ABCA5 Missense_Mutation p.E553K 0.31 tolerated(0.06) probably_damaging(0.967) TCGA-C8-A274-01 17 72700695 72700695 C T CD300LF Missense_Mutation p.D102N 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-C8-A274-01 17 74079730 74079730 C T EXOC7 Silent p.%3D 0.16 TCGA-C8-A274-01 17 7612903 7612903 C G EFNB3 3'UTR 0.25 TCGA-C8-A274-01 17 76210286 76210286 C A BIRC5 5'UTR 0.25 TCGA-C8-A274-01 17 79632282 79632282 G A OXLD1 Silent p.L131L 0.25 TCGA-C8-A274-01 17 9503393 9503393 G A WDR16 Missense_Mutation p.D216N 0.25 tolerated(0.15) benign(0.134) TCGA-C8-A274-01 18 21119419 21119419 G A NPC1 Silent p.F937F 0.29 TCGA-C8-A274-01 18 226824 226824 G C THOC1 Silent p.L332L 0.35 TCGA-C8-A274-01 18 45374910 45374910 G C SMAD2 Missense_Mutation p.F311L 0.30 deleterious(0.01) probably_damaging(1) TCGA-C8-A274-01 18 61377484 61377484 G A SERPINB11 Silent p.L19L 0.06 TCGA-C8-A274-01 19 10363300 10363300 C T MRPL4 Silent p.V66V 0.32 TCGA-C8-A274-01 19 10478748 10478748 C G TYK2 Missense_Mutation p.E150Q 0.09 deleterious(0.02) possibly_damaging(0.742) TCGA-C8-A274-01 19 13370494 13370494 C G CACNA1A Missense_Mutation p.E1424D 0.25 possibly_damaging(0.801) TCGA-C8-A274-01 19 1615425 1615425 G A TCF3 Missense_Mutation p.R561W 0.26 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 19 18726791 18726791 G T TMEM59L Missense_Mutation p.V139F 0.20 deleterious(0.04) benign(0.018) TCGA-C8-A274-01 19 19304852 19304852 G C RFXANK Missense_Mutation p.D33H 0.20 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-C8-A274-01 19 21106115 21106115 C G ZNF85 5'UTR 0.29 TCGA-C8-A274-01 19 23844973 23844973 C T ZNF675 Missense_Mutation p.E57K 0.11 tolerated(0.07) benign(0.003) TCGA-C8-A274-01 19 2991959 2991959 C T TLE6 Silent p.L455L 0.27 TCGA-C8-A274-01 19 35085448 35085448 G T SCGB2B2 Silent p.T7T 0.27 TCGA-C8-A274-01 19 38103573 38103599 GAAGCCCTACGAATGTAAGGAATGTGG - ZNF540 In_Frame_Del p.P466_K474del 0.35 TCGA-C8-A274-01 19 45490529 45490529 G A CLPTM1 Missense_Mutation p.E296K 0.16 tolerated(0.08) benign(0.206) TCGA-C8-A274-01 19 50118164 50118164 G A PRR12 Missense_Mutation p.R1641Q 0.12 unknown(0) TCGA-C8-A274-01 19 50373175 50373175 C T AKT1S1 Silent p.%3D 0.18 TCGA-C8-A274-01 19 53611502 53611502 C G ZNF415 3'UTR 0.31 TCGA-C8-A274-01 19 55086371 55086371 T A LILRA2 Missense_Mutation p.S176T 0.19 tolerated(0.4) probably_damaging(0.997) TCGA-C8-A274-01 19 55693022 55693022 G C PTPRH 3'UTR 0.13 TCGA-C8-A274-01 19 57869175 57869175 C A ZNF304 Missense_Mutation p.N646K 0.34 tolerated(0.05) benign(0.118) TCGA-C8-A274-01 19 5788152 5788152 G A DUS3L Silent p.R326R 0.25 TCGA-C8-A274-01 19 57931692 57931692 G C ZNF17 Missense_Mutation p.E278Q 0.18 tolerated(0.09) benign(0.08) TCGA-C8-A274-01 19 59009898 59009898 C T SLC27A5 Missense_Mutation p.G686E 0.06 deleterious(0.04) probably_damaging(1) TCGA-C8-A274-01 19 6426303 6426303 G A SLC25A41 3'UTR 0.33 TCGA-C8-A274-01 1 10363841 10363841 G C KIF1B Intron 0.41 TCGA-C8-A274-01 1 104116527 104116527 C T AMY2B Silent p.F237F 0.34 TCGA-C8-A274-01 1 1190722 1190722 G T UBE2J2 Missense_Mutation p.P230Q 0.33 tolerated(0.28) benign(0.128) TCGA-C8-A274-01 1 12389921 12389921 G A VPS13D Missense_Mutation p.E2745K 0.10 benign(0.006) TCGA-C8-A274-01 1 147126421 147126421 G C ACP6 Missense_Mutation p.S223C 0.10 tolerated(0.07) benign(0.033) TCGA-C8-A274-01 1 150235547 150235547 G C CA14 Missense_Mutation p.Q223H 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-C8-A274-01 1 151021205 151021205 C T C1orf56 Silent p.L294L 0.11 TCGA-C8-A274-01 1 155531916 155531916 G C ASH1L Intron 0.12 TCGA-C8-A274-01 1 155735772 155735772 G C GON4L Missense_Mutation p.I1164M 0.14 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-C8-A274-01 1 156142776 156142776 C G SEMA4A Missense_Mutation p.L432V 0.14 tolerated(0.44) benign(0.012) TCGA-C8-A274-01 1 156146369 156146369 C T SEMA4A Nonsense_Mutation p.Q623* 0.14 TCGA-C8-A274-01 1 156642072 156642072 C T NES Missense_Mutation p.M636I 0.18 tolerated(0.25) benign(0.004) TCGA-C8-A274-01 1 158449727 158449727 G T OR10R2 Missense_Mutation p.Q20H 0.15 tolerated(0.07) possibly_damaging(0.45) TCGA-C8-A274-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.06 tolerated(0.05) benign(0.069) TCGA-C8-A274-01 1 162725054 162725054 G A DDR2 Missense_Mutation p.V176M 0.10 deleterious(0) probably_damaging(0.999) TCGA-C8-A274-01 1 168034923 168034923 G A DCAF6 Silent p.L845L 0.13 TCGA-C8-A274-01 1 182025923 182025923 A T ZNF648 Missense_Mutation p.V408E 0.09 tolerated(0.06) probably_damaging(0.912) TCGA-C8-A274-01 1 183511502 183511502 G A SMG7 Intron 0.14 TCGA-C8-A274-01 1 197113231 197113231 C T ASPM Splice_Site p.X100_splice 0.16 TCGA-C8-A274-01 1 205498223 205498223 C T CDK18 Silent p.L387L 0.12 TCGA-C8-A274-01 1 205499425 205499425 G A CDK18 Silent p.L450L 0.13 TCGA-C8-A274-01 1 207243670 207243670 C T PFKFB2 Silent p.L380L 0.16 TCGA-C8-A274-01 1 213003576 213003576 G A C1orf227 3'UTR 0.07 TCGA-C8-A274-01 1 214815627 214815627 G A CENPF Missense_Mutation p.E1316K 0.25 possibly_damaging(0.592) TCGA-C8-A274-01 1 228557745 228557745 C G OBSCN Silent p.L7647L 0.06 TCGA-C8-A274-01 1 229567374 229567374 C T ACTA1 Missense_Mutation p.E336K 0.11 deleterious_low_confidence(0.03) benign(0.004) TCGA-C8-A274-01 1 229730565 229730565 A T TAF5L Missense_Mutation p.Y417N 0.12 deleterious(0.04) probably_damaging(0.975) TCGA-C8-A274-01 1 235377271 235377271 C T ARID4B Missense_Mutation p.E552K 0.11 tolerated(0.27) probably_damaging(0.931) TCGA-C8-A274-01 1 236914892 236914892 C T ACTN2 Silent p.I593I 0.11 TCGA-C8-A274-01 1 244803299 244803299 G C C1orf101 Missense_Mutation p.L924F 0.13 tolerated(0.15) possibly_damaging(0.551) TCGA-C8-A274-01 1 247150956 247150956 C G ZNF695 Missense_Mutation p.K287N 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-C8-A274-01 1 248128843 248128843 C T OR2AK2 Silent p.L70L 0.14 TCGA-C8-A274-01 1 248224664 248224664 G A OR2L3 Missense_Mutation p.M227I 0.11 deleterious(0.05) benign(0.17) TCGA-C8-A274-01 1 248569793 248569793 C T OR2T1 Silent p.G166G 0.11 TCGA-C8-A274-01 1 34090136 34090136 C T CSMD2 Missense_Mutation p.E1830K 0.25 deleterious(0) possibly_damaging(0.907) TCGA-C8-A274-01 1 36814341 36814341 C G STK40 Missense_Mutation p.Q233H 0.48 deleterious(0) probably_damaging(0.992) TCGA-C8-A274-01 1 47264795 47264795 C T CYP4B1 Silent p.G14G 0.05 TCGA-C8-A274-01 1 62941775 62941775 G C DOCK7 Missense_Mutation p.S1865C 0.05 deleterious(0) probably_damaging(0.997) TCGA-C8-A274-01 1 75622597 75622597 G A LHX8 Missense_Mutation p.R277K 0.05 deleterious(0) possibly_damaging(0.761) TCGA-C8-A274-01 1 87045807 87045807 A T CLCA4 Missense_Mutation p.S847C 0.37 deleterious(0) probably_damaging(0.971) TCGA-C8-A274-01 20 10286983 10286983 C T SNAP25 3'UTR 0.33 TCGA-C8-A274-01 20 2473354 2473354 G A ZNF343 Missense_Mutation p.L99F 0.06 tolerated(0.12) benign(0.135) TCGA-C8-A274-01 20 3211607 3211607 G C SLC4A11 Silent p.L423L 0.16 TCGA-C8-A274-01 20 32228206 32228206 G A CBFA2T2 Missense_Mutation p.E462K 0.08 tolerated(0.11) possibly_damaging(0.468) TCGA-C8-A274-01 20 33231980 33231980 G A PIGU Silent p.F102F 0.16 TCGA-C8-A274-01 20 33574766 33574766 G A MYH7B Missense_Mutation p.D370N 0.07 possibly_damaging(0.847) TCGA-C8-A274-01 20 42907676 42907676 C G GDAP1L1 Silent p.L280L 0.26 TCGA-C8-A274-01 20 43150659 43150659 G A SERINC3 5'UTR 0.19 TCGA-C8-A274-01 20 45188607 45188607 G A SLC13A3 3'UTR 0.23 TCGA-C8-A274-01 20 46255914 46255914 T C NCOA3 Missense_Mutation p.S176P 0.21 deleterious(0.04) benign(0.1) TCGA-C8-A274-01 20 50769283 50769283 G C ZFP64 Missense_Mutation p.P483R 0.29 deleterious(0) probably_damaging(0.998) TCGA-C8-A274-01 20 61511899 61511899 C G DIDO1 Missense_Mutation p.Q1803H 0.15 possibly_damaging(0.885) TCGA-C8-A274-01 21 36252880 36252881 - G RUNX1 Frame_Shift_Ins p.L161Pfs*52 0.46 TCGA-C8-A274-01 21 36252994 36252995 - C RUNX1 Frame_Shift_Ins p.D123Gfs*15 0.17 TCGA-C8-A274-01 22 19865914 19865914 C T TXNRD2 Missense_Mutation p.R441Q 0.39 deleterious(0.02) benign(0.288) TCGA-C8-A274-01 22 22041956 22041956 A T PPIL2 Missense_Mutation p.I308F 0.27 deleterious(0) probably_damaging(0.974) TCGA-C8-A274-01 22 41368614 41368614 G T RBX1 3'UTR 0.29 TCGA-C8-A274-01 2 100185311 100185311 C T AFF3 Intron 0.20 TCGA-C8-A274-01 2 10830086 10830086 G T NOL10 5'UTR 0.37 TCGA-C8-A274-01 2 120020658 120020658 T C STEAP3 Missense_Mutation p.V414A 0.38 tolerated(0.19) benign(0.204) TCGA-C8-A274-01 2 130898752 130898752 G C CCDC74B Missense_Mutation p.P221R 0.09 tolerated(0.14) probably_damaging(0.939) TCGA-C8-A274-01 2 131797727 131797727 G A ARHGEF4 Missense_Mutation p.E296K 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-C8-A274-01 2 152520097 152520097 C G NEB Missense_Mutation p.E1910Q 0.23 probably_damaging(0.92) TCGA-C8-A274-01 2 163174697 163174697 C G IFIH1 Missense_Mutation p.E41Q 0.13 tolerated(0.08) benign(0.08) TCGA-C8-A274-01 2 176860340 176860340 G A KIAA1715 5'UTR 0.24 TCGA-C8-A274-01 2 179423171 179423171 C G TTN Silent p.L29005L 0.16 TCGA-C8-A274-01 2 182403832 182403832 C T CERKL Missense_Mutation p.E535K 0.15 deleterious(0.03) benign(0.303) TCGA-C8-A274-01 2 190742066 190742066 C G PMS1 Missense_Mutation p.I901M 0.12 tolerated(0.15) benign(0.081) TCGA-C8-A274-01 2 196545103 196545103 G T SLC39A10 Missense_Mutation p.D113Y 0.21 tolerated(0.18) probably_damaging(0.999) TCGA-C8-A274-01 2 202149901 202149901 C T CASP8 Nonsense_Mutation p.Q448* 0.11 TCGA-C8-A274-01 2 202356031 202356031 C A ALS2CR11 Missense_Mutation p.R1678I 0.19 deleterious(0) probably_damaging(0.931) TCGA-C8-A274-01 2 202356066 202356066 C T ALS2CR11 Silent p.K1666K 0.18 TCGA-C8-A274-01 2 202356492 202356492 C T ALS2CR11 Missense_Mutation p.M1524I 0.12 tolerated(0.31) benign(0.016) TCGA-C8-A274-01 2 202357912 202357912 C G ALS2CR11 Missense_Mutation p.S1051T 0.24 tolerated(0.34) benign(0.007) TCGA-C8-A274-01 2 202358197 202358197 C A ALS2CR11 Missense_Mutation p.S956I 0.10 tolerated(0.18) possibly_damaging(0.6) TCGA-C8-A274-01 2 217543764 217543764 C A IGFBP5 Nonsense_Mutation p.E126* 0.28 TCGA-C8-A274-01 2 220038163 220038163 C T CNPPD1 Missense_Mutation p.R200Q 0.27 deleterious(0) probably_damaging(0.986) TCGA-C8-A274-01 2 29358502 29358502 C G CLIP4 Silent p.L206L 0.04 TCGA-C8-A274-01 2 38407627 38407627 C A CYP1B1-AS1 RNA 0.20 TCGA-C8-A274-01 2 39553347 39553347 C A MAP4K3 Missense_Mutation p.G201V 0.27 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 2 55130604 55130604 C A EML6 Missense_Mutation p.S1125Y 0.06 deleterious(0) possibly_damaging(0.853) TCGA-C8-A274-01 2 95847133 95847133 C T ZNF2 Missense_Mutation p.S187L 0.21 tolerated(0.1) benign(0.081) TCGA-C8-A274-01 3 10089640 10089640 C T FANCD2 Nonsense_Mutation p.Q440* 0.28 TCGA-C8-A274-01 3 11623773 11623773 T C VGLL4 Intron 0.46 TCGA-C8-A274-01 3 132050535 132050535 G C ACPP Missense_Mutation p.K87N 0.23 tolerated(0.12) possibly_damaging(0.614) TCGA-C8-A274-01 3 151165429 151165429 G T IGSF10 Silent p.P780P 0.27 TCGA-C8-A274-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.58 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A274-01 3 36872506 36872506 C T TRANK1 Silent p.V2812V 0.42 TCGA-C8-A274-01 3 37114317 37114317 G A LRRFIP2 Silent p.L476L 0.31 TCGA-C8-A274-01 3 38913709 38913709 G A SCN11A Missense_Mutation p.A1157V 0.29 deleterious(0) probably_damaging(0.919) TCGA-C8-A274-01 3 44612804 44612804 T C ZKSCAN7 Silent p.F734F 0.28 TCGA-C8-A274-01 3 47144879 47144879 C A SETD2 Missense_Mutation p.R1625L 0.43 deleterious(0) possibly_damaging(0.582) TCGA-C8-A274-01 4 100125193 100125193 C T ADH6 3'UTR 0.24 TCGA-C8-A274-01 4 122082329 122082329 C T TNIP3 Missense_Mutation p.E114K 0.07 deleterious(0) probably_damaging(0.994) TCGA-C8-A274-01 4 145985831 145985831 C T ANAPC10 Missense_Mutation p.V74M 0.38 deleterious(0.04) benign(0.186) TCGA-C8-A274-01 4 153691716 153691716 T C TIGD4 Silent p.Q147Q 0.16 TCGA-C8-A274-01 4 155507948 155507948 G T FGA Missense_Mutation p.D211E 0.19 tolerated(0.13) benign(0.059) TCGA-C8-A274-01 4 15640233 15640233 G C FBXL5 Missense_Mutation p.Q161E 0.26 tolerated(0.09) benign(0.06) TCGA-C8-A274-01 4 15717385 15717385 G A BST1 Missense_Mutation p.E223K 0.34 tolerated(0.09) probably_damaging(0.985) TCGA-C8-A274-01 4 174254097 174254097 C T HMGB2 Missense_Mutation p.E116K 0.27 tolerated(0.07) benign(0.344) TCGA-C8-A274-01 4 2306914 2306914 G C ZFYVE28 Missense_Mutation p.P385A 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.611) TCGA-C8-A274-01 4 23814411 23814411 C G PPARGC1A Missense_Mutation p.E660Q 0.28 tolerated(0.08) unknown(0) TCGA-C8-A274-01 4 41984214 41984214 G A DCAF4L1 Silent p.L135L 0.36 TCGA-C8-A274-01 4 56319841 56319841 T C CLOCK Intron 0.29 TCGA-C8-A274-01 4 76878697 76878697 A T SDAD1 Silent p.I581I 0.29 TCGA-C8-A274-01 4 87691103 87691103 G A PTPN13 Silent p.V1562V 0.27 TCGA-C8-A274-01 4 90857679 90857679 A G MMRN1 Missense_Mutation p.K950E 0.33 tolerated(0.07) benign(0.01) TCGA-C8-A274-01 5 122153033 122153033 A C SNX2 Missense_Mutation p.H324P 0.30 deleterious(0) possibly_damaging(0.747) TCGA-C8-A274-01 5 140615817 140615817 C T PCDHB18 RNA 0.40 TCGA-C8-A274-01 5 14711146 14711146 A G ANKH 3'UTR 0.43 TCGA-C8-A274-01 5 169461520 169461520 G C DOCK2 Missense_Mutation p.E1195D 0.17 tolerated(0.09) benign(0.076) TCGA-C8-A274-01 5 21842404 21842404 C T CDH12 Missense_Mutation p.R227K 0.29 deleterious(0) probably_damaging(0.993) TCGA-C8-A274-01 5 35954534 35954534 G A UGT3A1 Missense_Mutation p.P448S 0.13 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 5 3599629 3599629 C G IRX1 Missense_Mutation p.N189K 0.06 deleterious(0) probably_damaging(0.932) TCGA-C8-A274-01 5 74047198 74047198 G A GFM2 Missense_Mutation p.T142I 0.31 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 5 79057687 79057687 G A CMYA5 Missense_Mutation p.D3772N 0.33 possibly_damaging(0.841) TCGA-C8-A274-01 5 82554636 82554636 G A XRCC4 Intron 0.50 TCGA-C8-A274-01 5 94267685 94267685 C T MCTP1 Missense_Mutation p.M395I 0.26 tolerated(0.12) benign(0.005) TCGA-C8-A274-01 5 95084070 95084070 C G RHOBTB3 Nonsense_Mutation p.S150* 0.27 TCGA-C8-A274-01 6 111696566 111696566 C T REV3L Missense_Mutation p.D998N 0.22 tolerated(0.36) benign(0.443) TCGA-C8-A274-01 6 116757178 116757178 A G DSE Missense_Mutation p.D516G 0.28 tolerated(0.85) benign(0.004) TCGA-C8-A274-01 6 132892456 132892456 G C TAAR6 Missense_Mutation p.K332N 0.27 tolerated(0.12) benign(0.012) TCGA-C8-A274-01 6 151857537 151857537 G T CCDC170 Nonsense_Mutation p.E48* 0.27 TCGA-C8-A274-01 6 152804231 152804231 C G SYNE1 Missense_Mutation p.E447Q 0.22 possibly_damaging(0.728) TCGA-C8-A274-01 6 159660685 159660685 C A FNDC1 Silent p.V1439V 0.28 TCGA-C8-A274-01 6 26032136 26032136 C T HIST1H3B Silent p.E51E 0.19 TCGA-C8-A274-01 6 33690650 33690650 G A IP6K3 Silent p.L360L 0.08 TCGA-C8-A274-01 6 43022095 43022095 C T MRPL2 Missense_Mutation p.G279R 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A274-01 6 73904286 73904286 G A KCNQ5 Missense_Mutation p.E669K 0.33 deleterious(0) benign(0.359) TCGA-C8-A274-01 6 90573267 90573267 C G CASP8AP2 RNA 0.24 TCGA-C8-A274-01 7 107431617 107431617 A T SLC26A3 Missense_Mutation p.V149D 0.25 deleterious(0.04) benign(0.197) TCGA-C8-A274-01 7 148718177 148718177 C T PDIA4 Missense_Mutation p.E51K 0.22 tolerated(0.68) benign(0.002) TCGA-C8-A274-01 7 151904448 151904448 C A KMT2C Nonsense_Mutation p.E1260* 0.04 TCGA-C8-A274-01 7 1542644 1542644 G A INTS1 Missense_Mutation p.S81F 0.14 deleterious(0.02) benign(0.212) TCGA-C8-A274-01 7 1542722 1542722 G C INTS1 Missense_Mutation p.S55C 0.16 deleterious(0.01) possibly_damaging(0.764) TCGA-C8-A274-01 7 44553138 44553138 C G NPC1L1 Missense_Mutation p.D1330H 0.43 tolerated_low_confidence(0.1) benign(0.151) TCGA-C8-A274-01 7 7472166 7472166 G A COL28A1 Missense_Mutation p.R646C 0.08 deleterious(0.01) probably_damaging(0.976) TCGA-C8-A274-01 7 98648569 98648569 A G SMURF1 Missense_Mutation p.F285L 0.19 tolerated(0.79) benign(0.153) TCGA-C8-A274-01 8 100654384 100654384 G A VPS13B Missense_Mutation p.D1881N 0.09 tolerated(0.12) probably_damaging(0.956) TCGA-C8-A274-01 8 101936494 101936494 C G YWHAZ Missense_Mutation p.E151Q 0.15 tolerated_low_confidence(0.07) benign(0.021) TCGA-C8-A274-01 8 113266484 113266484 G C CSMD3 Missense_Mutation p.Q3370E 0.24 tolerated(0.35) benign(0.365) TCGA-C8-A274-01 8 121457595 121457595 G A MRPL13 5'UTR 0.22 TCGA-C8-A274-01 8 133823329 133823329 G A PHF20L1 Missense_Mutation p.E296K 0.25 tolerated(0.15) possibly_damaging(0.5) TCGA-C8-A274-01 8 144332515 144332515 G C ZFP41 Missense_Mutation p.E168Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-C8-A274-01 8 144652536 144652536 G T MROH6 Missense_Mutation p.A307D 0.19 deleterious(0) probably_damaging(0.992) TCGA-C8-A274-01 8 145583494 145583494 C G SLC52A2 Missense_Mutation p.F114L 0.22 tolerated(0.31) benign(0.071) TCGA-C8-A274-01 8 24209527 24209527 G T ADAM28 Missense_Mutation p.D736Y 0.30 deleterious(0.05) benign(0.234) TCGA-C8-A274-01 8 48875562 48875562 G C MCM4 Missense_Mutation p.D219H 0.20 tolerated(0.07) benign(0.019) TCGA-C8-A274-01 8 87437451 87437451 G A WWP1 Splice_Site p.X354_splice 0.27 TCGA-C8-A274-01 8 87464813 87464813 C T WWP1 Nonsense_Mutation p.R767* 0.18 TCGA-C8-A274-01 9 112705364 112705364 G A PALM2 Missense_Mutation p.A299T 0.47 tolerated(0.71) benign(0.002) TCGA-C8-A274-01 9 112705539 112705539 C T PALM2 Missense_Mutation p.T357M 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A274-01 9 113238421 113238421 C G SVEP1 Intron 0.30 TCGA-C8-A274-01 9 125582338 125582338 G A PDCL 3'UTR 0.20 TCGA-C8-A274-01 9 132595746 132595746 C T C9orf78 Silent p.L82L 0.24 TCGA-C8-A274-01 9 134503379 134503379 G A RAPGEF1 Silent p.L375L 0.33 TCGA-C8-A274-01 9 94487223 94487223 C T ROR2 Missense_Mutation p.R518Q 0.34 tolerated(0.58) benign(0.009) TCGA-C8-A274-01 X 100117252 100117252 T A NOX1 Missense_Mutation p.S238C 0.04 tolerated(0.05) benign(0.438) TCGA-C8-A274-01 X 102968633 102968633 G A TMEM31 Missense_Mutation p.E72K 0.18 tolerated_low_confidence(0.8) benign(0.031) TCGA-C8-A274-01 X 118123497 118123497 G C LONRF3 Missense_Mutation p.E396Q 0.18 tolerated(0.31) benign(0.082) TCGA-C8-A274-01 X 118370396 118370396 G A PGRMC1 Missense_Mutation p.E24K 0.17 deleterious(0) possibly_damaging(0.873) TCGA-C8-A274-01 X 118780729 118780729 G A SEPT6 Intron 0.23 TCGA-C8-A274-01 X 128723903 128723903 G A OCRL Missense_Mutation p.E851K 0.24 tolerated(0.72) benign(0.004) TCGA-C8-A274-01 X 138878432 138878432 C A ATP11C Missense_Mutation p.Q405H 0.25 deleterious(0) probably_damaging(0.998) TCGA-C8-A274-01 X 15682955 15682955 T A TMEM27 5'UTR 0.14 TCGA-C8-A274-01 X 31496247 31496247 G C DMD Silent p.L2971L 0.10 TCGA-C8-A274-01 X 35820374 35820374 G A MAGEB16 Missense_Mutation p.E21K 0.27 tolerated(0.15) benign(0.027) TCGA-C8-A274-01 X 36303788 36303788 C A CXorf30 5'UTR 0.05 TCGA-C8-A274-01 X 55029522 55029522 G T APEX2 Missense_Mutation p.A184S 0.20 deleterious(0.01) possibly_damaging(0.656) TCGA-C8-A274-01 X 9693796 9693796 C A GPR143 Missense_Mutation p.G402V 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-C8-A275-01 10 103292145 103292145 G A BTRC Missense_Mutation p.D312N 0.30 deleterious(0) probably_damaging(0.983) TCGA-C8-A275-01 10 127726840 127726840 C T ADAM12 Missense_Mutation p.M776I 0.21 tolerated(0.44) benign(0.001) TCGA-C8-A275-01 10 25273745 25273745 C G ENKUR Missense_Mutation p.Q228H 0.22 deleterious(0.01) benign(0.076) TCGA-C8-A275-01 10 26310566 26310566 C G MYO3A Missense_Mutation p.F240L 0.30 deleterious(0.01) possibly_damaging(0.893) TCGA-C8-A275-01 10 50340136 50340136 G A FAM170B Missense_Mutation p.T125M 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A275-01 10 75552020 75552020 C G ZSWIM8 Missense_Mutation p.L575V 0.23 tolerated_low_confidence(0.75) benign(0) TCGA-C8-A275-01 10 75671664 75671664 G C PLAU Intron 0.18 TCGA-C8-A275-01 11 17124376 17124376 A G PIK3C2A Silent p.A1228A 0.34 TCGA-C8-A275-01 11 20940827 20940827 C T NELL1 Silent p.L236L 0.18 TCGA-C8-A275-01 12 102569284 102569284 C T PARPBP Missense_Mutation p.S282L 0.39 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 12 112686210 112686210 C G HECTD4 Missense_Mutation p.E1207Q 0.33 possibly_damaging(0.878) TCGA-C8-A275-01 12 29709842 29709842 G A TMTC1 Nonsense_Mutation p.Q542* 0.34 TCGA-C8-A275-01 12 45741997 45741997 G C ANO6 Missense_Mutation p.E199Q 0.14 deleterious(0.02) probably_damaging(0.961) TCGA-C8-A275-01 12 81657056 81657056 A G PPFIA2 Silent p.F1223F 0.23 TCGA-C8-A275-01 13 20763122 20763122 C A GJB2 Missense_Mutation p.G200V 0.20 tolerated(0.52) benign(0.038) TCGA-C8-A275-01 13 21142003 21142003 G T IFT88 Intron 0.55 TCGA-C8-A275-01 13 49050875 49050875 T A RB1 Nonsense_Mutation p.C853* 0.60 TCGA-C8-A275-01 14 102474586 102474586 G A DYNC1H1 Silent p.L1963L 0.32 TCGA-C8-A275-01 14 20215639 20215639 C G OR4Q3 Nonsense_Mutation p.S18* 0.22 TCGA-C8-A275-01 14 35579802 35579802 A C PPP2R3C Missense_Mutation p.L74V 0.21 tolerated(0.15) possibly_damaging(0.775) TCGA-C8-A275-01 14 71199275 71199275 C G MAP3K9 Missense_Mutation p.L951F 0.29 tolerated(0.39) benign(0.394) TCGA-C8-A275-01 15 42292464 42292464 C T PLA2G4E Silent p.V230V 0.13 TCGA-C8-A275-01 15 57212095 57212095 G A TCF12 Intron 0.25 TCGA-C8-A275-01 15 83933256 83933256 G A BNC1 Silent p.F249F 0.29 TCGA-C8-A275-01 15 99666992 99666992 C G SYNM Missense_Mutation p.P333R 0.11 deleterious(0) probably_damaging(0.962) TCGA-C8-A275-01 16 23701433 23701433 C G PLK1 3'UTR 0.50 TCGA-C8-A275-01 16 23702226 23702226 C G ERN2 Missense_Mutation p.E951Q 0.19 deleterious(0.01) benign(0.188) TCGA-C8-A275-01 16 31341642 31341642 C T ITGAM Missense_Mutation p.A1026V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A275-01 17 21217487 21217487 C A MAP2K3 Missense_Mutation p.T330N 0.06 tolerated(0.52) benign(0.002) TCGA-C8-A275-01 17 27233357 27233357 G C PHF12 Missense_Mutation p.I953M 0.07 deleterious(0) probably_damaging(0.972) TCGA-C8-A275-01 17 27959029 27959029 C G SSH2 Missense_Mutation p.E1034D 0.03 tolerated_low_confidence(0.54) benign(0.003) TCGA-C8-A275-01 17 38975872 38975872 C T KRT10 Missense_Mutation p.E424K 0.04 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A275-01 17 39296630 39296630 C T KRTAP4-6 Missense_Mutation p.R37H 0.06 tolerated(0.06) unknown(0) TCGA-C8-A275-01 17 48195601 48195601 C G SAMD14 Missense_Mutation p.R45P 0.22 deleterious(0) probably_damaging(1) TCGA-C8-A275-01 17 55183786 55183786 G C AKAP1 Missense_Mutation p.E321Q 0.10 tolerated(0.55) benign(0.403) TCGA-C8-A275-01 17 56350265 56350265 T C MPO Missense_Mutation p.I546V 0.15 tolerated(0.17) benign(0.039) TCGA-C8-A275-01 17 57430827 57430827 G A YPEL2 Silent p.R19R 0.17 TCGA-C8-A275-01 17 65026607 65026607 C T CACNG4 Silent p.I157I 0.16 TCGA-C8-A275-01 17 66538848 66538848 G C FAM20A Missense_Mutation p.F305L 0.21 deleterious(0) probably_damaging(0.996) TCGA-C8-A275-01 17 7247037 7247037 G C ACAP1 Missense_Mutation p.E181Q 0.53 tolerated(1) benign(0.004) TCGA-C8-A275-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.44 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 18 44190796 44190796 C T LOXHD1 Missense_Mutation p.M234I 0.41 tolerated(0.4) benign(0) TCGA-C8-A275-01 19 11537068 11537068 C G CCDC151 Missense_Mutation p.E287Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-C8-A275-01 19 12501963 12501963 C T ZNF799 Missense_Mutation p.A417T 0.23 deleterious(0) benign(0.369) TCGA-C8-A275-01 19 18322678 18322678 G A PDE4C Missense_Mutation p.T561M 0.39 deleterious(0) probably_damaging(1) TCGA-C8-A275-01 19 2834599 2834599 C T ZNF554 Nonsense_Mutation p.R456* 0.29 TCGA-C8-A275-01 19 37904775 37904775 C G ZNF569 Missense_Mutation p.R262T 0.18 deleterious(0.04) probably_damaging(0.991) TCGA-C8-A275-01 19 38895681 38895681 C G FAM98C Silent p.L161L 0.20 TCGA-C8-A275-01 19 43690498 43690498 G A PSG5 Silent p.L20L 0.25 TCGA-C8-A275-01 19 44006383 44006383 G C PHLDB3 Missense_Mutation p.S89C 0.16 tolerated(0.11) benign(0.302) TCGA-C8-A275-01 19 44055742 44055742 G A XRCC1 Missense_Mutation p.R394W 0.07 deleterious(0.01) possibly_damaging(0.828) TCGA-C8-A275-01 19 44980856 44980856 G A ZNF180 Silent p.F614F 0.06 TCGA-C8-A275-01 19 46914605 46914605 C A CCDC8 Missense_Mutation p.W488L 0.20 probably_damaging(0.999) TCGA-C8-A275-01 19 54304506 54304506 G T NLRP12 Missense_Mutation p.P911T 0.35 deleterious(0.01) possibly_damaging(0.517) TCGA-C8-A275-01 19 54310781 54310781 G C NLRP12 Silent p.L737L 0.22 TCGA-C8-A275-01 19 8841852 8841852 C G OR2Z1 Silent p.L154L 0.29 TCGA-C8-A275-01 1 101376704 101376704 G C SLC30A7 Missense_Mutation p.E128Q 0.25 tolerated(0.09) probably_damaging(0.998) TCGA-C8-A275-01 1 111495184 111495184 G C LRIF1 Missense_Mutation p.L108V 0.15 deleterious(0) possibly_damaging(0.801) TCGA-C8-A275-01 1 113057694 113057694 C T WNT2B Silent p.V127V 0.25 TCGA-C8-A275-01 1 12919911 12919911 G A PRAMEF2 Nonsense_Mutation p.W217* 0.20 TCGA-C8-A275-01 1 157514217 157514217 G A FCRL5 Missense_Mutation p.R227C 0.20 tolerated(0.19) benign(0.001) TCGA-C8-A275-01 1 158324193 158324193 C T CD1E Silent p.L29L 0.31 TCGA-C8-A275-01 1 168550356 168550356 C G XCL1 Silent p.V81V 0.10 TCGA-C8-A275-01 1 232943549 232943549 A G MAP10 Missense_Mutation p.D927G 0.26 tolerated(0.17) benign(0.088) TCGA-C8-A275-01 1 23660097 23660097 G A HNRNPR Silent p.L138L 0.36 TCGA-C8-A275-01 1 62923257 62923257 C T DOCK7 Missense_Mutation p.R2080K 0.32 tolerated(0.1) benign(0.23) TCGA-C8-A275-01 1 86437030 86437030 C G COL24A1 Missense_Mutation p.G804A 0.18 deleterious(0) probably_damaging(0.992) TCGA-C8-A275-01 20 13029712 13029712 C G SPTLC3 Silent p.L79L 0.31 TCGA-C8-A275-01 20 19956130 19956130 C T RIN2 Silent p.F536F 0.43 TCGA-C8-A275-01 20 23966380 23966380 T G GGTLC1 Missense_Mutation p.K152T 0.21 deleterious(0.01) benign(0.275) TCGA-C8-A275-01 21 16337186 16337186 G A NRIP1 Missense_Mutation p.P1110S 0.21 tolerated(0.3) benign(0.038) TCGA-C8-A275-01 21 45181694 45181694 C T PDXK 3'UTR 0.29 TCGA-C8-A275-01 21 47819692 47819692 C T PCNT Silent p.I1591I 0.13 TCGA-C8-A275-01 22 45755687 45755687 C T SMC1B Missense_Mutation p.E954K 0.25 deleterious(0.05) benign(0.018) TCGA-C8-A275-01 22 46653441 46653441 G A PKDREJ Silent p.L1927L 0.35 TCGA-C8-A275-01 22 46655016 46655016 G C PKDREJ Missense_Mutation p.L1402V 0.22 tolerated(0.13) benign(0.226) TCGA-C8-A275-01 2 101646084 101646084 C T TBC1D8 Silent p.V682V 0.40 TCGA-C8-A275-01 2 109383764 109383764 C G RANBP2 Missense_Mutation p.L2257V 0.04 deleterious(0.04) possibly_damaging(0.872) TCGA-C8-A275-01 2 136562528 136562528 C T LCT Missense_Mutation p.A1425T 0.37 deleterious(0.04) possibly_damaging(0.558) TCGA-C8-A275-01 2 167330816 167330816 T A SCN7A Missense_Mutation p.R91S 0.26 deleterious(0) probably_damaging(0.998) TCGA-C8-A275-01 2 172944855 172944855 G A METAP1D Splice_Site p.X284_splice 0.04 TCGA-C8-A275-01 2 173955764 173955764 C T MLTK Missense_Mutation p.S2L 0.26 tolerated_low_confidence(0.45) benign(0.024) TCGA-C8-A275-01 2 201997758 201997758 G T CFLAR Silent p.L96L 0.33 TCGA-C8-A275-01 2 205990343 205990343 G A PARD3B Missense_Mutation p.R439K 0.09 tolerated(1) benign(0.017) TCGA-C8-A275-01 2 24291326 24291326 C T SF3B14 Silent p.G51G 0.36 TCGA-C8-A275-01 2 29169540 29169540 C T WDR43 Silent p.A643A 0.26 TCGA-C8-A275-01 3 113152517 113152517 C G WDR52 Splice_Site 0.36 TCGA-C8-A275-01 3 11421470 11421470 G C ATG7 Missense_Mutation p.D634H 0.19 tolerated(0.2) benign(0.005) TCGA-C8-A275-01 3 184910418 184910418 G A EHHADH Missense_Mutation p.H590Y 0.34 tolerated(0.11) benign(0.001) TCGA-C8-A275-01 3 186370419 186370419 G A FETUB Silent p.%3D 0.47 TCGA-C8-A275-01 3 38768498 38768498 C T SCN10A Missense_Mutation p.D896N 0.33 deleterious(0) probably_damaging(0.979) TCGA-C8-A275-01 4 159894264 159894264 G T C4orf45 Missense_Mutation p.N88K 0.33 deleterious(0.03) probably_damaging(0.957) TCGA-C8-A275-01 4 82027041 82027041 G C PRKG2 Silent p.L663L 0.21 TCGA-C8-A275-01 5 14290927 14290927 G A TRIO Missense_Mutation p.E215K 0.24 probably_damaging(0.952) TCGA-C8-A275-01 5 146703558 146703558 G A STK32A Missense_Mutation p.E120K 0.13 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 5 148206482 148206482 G A ADRB2 Missense_Mutation p.E30K 0.25 tolerated(0.08) benign(0.001) TCGA-C8-A275-01 5 156593170 156593170 C T FAM71B Missense_Mutation p.E4K 0.23 deleterious(0.02) possibly_damaging(0.837) TCGA-C8-A275-01 5 169145739 169145739 G A DOCK2 Silent p.L737L 0.12 TCGA-C8-A275-01 5 170319487 170319487 G T RANBP17 Missense_Mutation p.G118V 0.28 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 5 65459733 65459733 C T SREK1 Missense_Mutation p.S290L 0.12 deleterious(0) probably_damaging(0.939) TCGA-C8-A275-01 5 89815272 89815272 G A LYSMD3 Silent p.L95L 0.19 TCGA-C8-A275-01 6 100896383 100896383 C G SIM1 Missense_Mutation p.D239H 0.13 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 6 144844314 144844314 G A UTRN Missense_Mutation p.D1966N 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-C8-A275-01 6 44224198 44224198 C T SLC35B2 Missense_Mutation p.V81M 0.22 deleterious(0.01) possibly_damaging(0.781) TCGA-C8-A275-01 6 53764633 53764633 C T LRRC1 Missense_Mutation p.S244L 0.24 tolerated(0.21) possibly_damaging(0.555) TCGA-C8-A275-01 6 54173316 54173316 C T TINAG 5'UTR 0.33 TCGA-C8-A275-01 6 656873 656873 C T HUS1B Silent p.A24A 0.16 TCGA-C8-A275-01 6 82906055 82906055 G A IBTK Missense_Mutation p.S1045F 0.24 deleterious(0) possibly_damaging(0.759) TCGA-C8-A275-01 6 90400436 90400436 C T MDN1 Missense_Mutation p.E3569K 0.30 benign(0.41) TCGA-C8-A275-01 7 107669499 107669499 C T LAMB4 Missense_Mutation p.R1712K 0.14 tolerated(0.8) benign(0.012) TCGA-C8-A275-01 7 140706249 140706249 C G MRPS33 Missense_Mutation p.R101T 0.30 deleterious(0) unknown(0) TCGA-C8-A275-01 7 22478332 22478332 C T STEAP1B Missense_Mutation p.A269T 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A275-01 7 298645 298645 C G FAM20C Missense_Mutation p.I493M 0.24 deleterious(0) probably_damaging(0.976) TCGA-C8-A275-01 7 32910255 32910255 C T KBTBD2 Missense_Mutation p.E192K 0.15 deleterious(0.01) probably_damaging(0.965) TCGA-C8-A275-01 7 56051543 56051543 C G GBAS Silent p.L189L 0.25 TCGA-C8-A275-01 8 145107776 145107776 T A OPLAH Missense_Mutation p.T1016S 0.59 tolerated(0.17) benign(0.054) TCGA-C8-A275-01 8 145665449 145665449 C T TONSL Missense_Mutation p.E479K 0.19 tolerated(0.64) benign(0.001) TCGA-C8-A275-01 8 145737356 145737356 C G RECQL4 Missense_Mutation p.E1111Q 0.09 deleterious(0.04) possibly_damaging(0.561) TCGA-C8-A275-01 8 41791830 41791830 T C KAT6A Missense_Mutation p.D1303G 0.25 unknown(0) TCGA-C8-A275-01 8 68005824 68005824 G - CSPP1 Frame_Shift_Del p.G154Vfs*34 0.22 TCGA-C8-A275-01 8 87489536 87489536 G A RMDN1 Silent p.H249H 0.71 TCGA-C8-A275-01 9 101073404 101073404 G A GABBR2 Silent p.I659I 0.40 TCGA-C8-A275-01 9 115806009 115806009 G C ZFP37 Missense_Mutation p.Q297E 0.10 tolerated(1) benign(0.006) TCGA-C8-A275-01 9 132982059 132982059 G A NCS1 Missense_Mutation p.G95E 0.54 deleterious(0) probably_damaging(0.989) TCGA-C8-A275-01 9 135977080 135977080 A G RALGDS Missense_Mutation p.S761P 0.34 deleterious(0.04) unknown(0) TCGA-C8-A275-01 9 136291377 136291377 G A ADAMTS13 Missense_Mutation p.G200S 0.18 deleterious(0) probably_damaging(1) TCGA-C8-A275-01 9 137772751 137772751 G A FCN2 Silent p.A28A 0.25 TCGA-C8-A275-01 9 140328693 140328693 G C NOXA1 Missense_Mutation p.E445Q 0.70 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 9 34343328 34343328 C G NUDT2 Missense_Mutation p.Q112E 0.62 deleterious(0.03) possibly_damaging(0.588) TCGA-C8-A275-01 9 71855021 71855021 C G TJP2 Missense_Mutation p.Q873E 0.51 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 9 74810496 74810496 G C GDA Silent p.L68L 0.16 TCGA-C8-A275-01 X 137715074 137715074 C G FGF13 Missense_Mutation p.K235N 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.696) TCGA-C8-A275-01 X 140983304 140983304 G A MAGEC3 Missense_Mutation p.R361Q 0.33 tolerated(0.22) benign(0.029) TCGA-C8-A275-01 X 153223547 153223547 C G HCFC1 Missense_Mutation p.V653L 0.31 deleterious(0) probably_damaging(0.946) TCGA-C8-A275-01 X 153418542 153418542 C G OPN1LW Missense_Mutation p.S180C 0.34 deleterious(0) possibly_damaging(0.841) TCGA-C8-A275-01 X 32380914 32380914 C G DMD Missense_Mutation p.K1772N 0.27 possibly_damaging(0.607) TCGA-C8-A275-01 X 47485763 47485763 C T CFP Missense_Mutation p.D366N 0.27 tolerated(0.05) possibly_damaging(0.728) TCGA-C8-A275-01 X 54574726 54574726 G C GNL3L Missense_Mutation p.G232A 0.26 deleterious(0) probably_damaging(0.999) TCGA-C8-A275-01 X 69459634 69459634 C G AWAT1 Missense_Mutation p.Q228E 0.23 deleterious(0) probably_damaging(0.996) TCGA-C8-A275-01 X 70148349 70148349 C T SLC7A3 Missense_Mutation p.E222K 0.12 tolerated(0.06) benign(0.021) TCGA-C8-A275-01 X 70832261 70832261 G C ACRC Missense_Mutation p.D603H 0.26 unknown(0) TCGA-C8-A275-01 X 70837215 70837215 G A CXCR3 Missense_Mutation p.S83L 0.42 tolerated(0.72) benign(0.002) TCGA-C8-A275-01 X 99551396 99551396 G C PCDH19 Missense_Mutation p.S1109C 0.16 tolerated_low_confidence(0.11) possibly_damaging(0.524) TCGA-C8-A278-01 10 12056170 12056170 A C UPF2 Missense_Mutation p.S387A 0.06 deleterious(0.02) benign(0.02) TCGA-C8-A278-01 10 5541283 5541283 G A CALML5 Missense_Mutation p.T40M 0.11 deleterious(0.02) benign(0) TCGA-C8-A278-01 10 91353062 91353062 C T PANK1 Missense_Mutation p.M501I 0.12 tolerated(0.37) benign(0.187) TCGA-C8-A278-01 11 57256834 57256834 G A SLC43A1 Missense_Mutation p.R409C 0.09 deleterious(0) probably_damaging(0.989) TCGA-C8-A278-01 13 32914549 32914549 C G BRCA2 Missense_Mutation p.N2019K 0.23 tolerated(0.16) benign(0.168) TCGA-C8-A278-01 13 80113888 80113888 C A NDFIP2 Silent p.G231G 0.10 TCGA-C8-A278-01 14 105960224 105960224 C T C14orf80 Missense_Mutation p.S213F 0.14 deleterious(0) probably_damaging(0.999) TCGA-C8-A278-01 14 24808688 24808688 C T RIPK3 Missense_Mutation p.D46N 0.18 tolerated(0.09) possibly_damaging(0.661) TCGA-C8-A278-01 15 56726563 56726563 T C MNS1 Missense_Mutation p.K348E 0.06 tolerated(0.2) benign(0.011) TCGA-C8-A278-01 16 11856527 11856527 C G ZC3H7A Missense_Mutation p.Q693H 0.12 deleterious(0.02) probably_damaging(0.984) TCGA-C8-A278-01 16 4245638 4245638 T G SRL Missense_Mutation p.I176L 0.21 tolerated(0.27) possibly_damaging(0.557) TCGA-C8-A278-01 17 38933238 38933238 C G KRT27 3'UTR 0.12 TCGA-C8-A278-01 17 38950160 38950160 A G KRT28 Missense_Mutation p.Y373H 0.11 tolerated(0.17) benign(0.215) TCGA-C8-A278-01 17 40125630 40125630 A C CNP Silent p.S318S 0.33 TCGA-C8-A278-01 17 47009050 47009050 G C SNF8 Missense_Mutation p.I198M 0.37 deleterious(0) possibly_damaging(0.883) TCGA-C8-A278-01 17 7578427 7578427 T G TP53 Missense_Mutation p.H168P 0.24 deleterious(0) probably_damaging(0.95) TCGA-C8-A278-01 19 14517932 14517932 G A CD97 Missense_Mutation p.G756D 0.06 deleterious(0) probably_damaging(0.977) TCGA-C8-A278-01 19 40006569 40006569 G A SELV Silent p.S239S 0.30 TCGA-C8-A278-01 19 46376150 46376150 C T FOXA3 Missense_Mutation p.A296V 0.22 tolerated(0.08) benign(0) TCGA-C8-A278-01 19 51656410 51656410 G T SIGLEC7 Missense_Mutation p.A438S 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-C8-A278-01 1 11580865 11580865 C A PTCHD2 Nonsense_Mutation p.Y774* 0.09 TCGA-C8-A278-01 1 155207291 155207291 C G GBA Missense_Mutation p.L280F 0.14 tolerated(0.28) benign(0.002) TCGA-C8-A278-01 1 232941055 232941055 C T MAP10 Missense_Mutation p.R96C 0.10 deleterious_low_confidence(0) benign(0.14) TCGA-C8-A278-01 1 33797902 33797902 G A PHC2 Missense_Mutation p.S621L 0.15 deleterious(0.02) possibly_damaging(0.782) TCGA-C8-A278-01 1 61869776 61869776 C T NFIA Missense_Mutation p.A404V 0.10 tolerated(0.63) possibly_damaging(0.863) TCGA-C8-A278-01 20 13415695 13415695 A G TASP1 Silent p.L364L 0.11 TCGA-C8-A278-01 20 61470092 61470092 G A COL9A3 Missense_Mutation p.E615K 0.11 tolerated(1) possibly_damaging(0.602) TCGA-C8-A278-01 20 858964 858964 C T ANGPT4 Missense_Mutation p.G354R 0.24 deleterious(0) probably_damaging(0.999) TCGA-C8-A278-01 21 30380725 30380725 G A RWDD2B Silent p.D95D 0.08 TCGA-C8-A278-01 22 32587198 32587198 G A RFPL2 Missense_Mutation p.S233F 0.08 deleterious(0.01) probably_damaging(0.985) TCGA-C8-A278-01 22 39016268 39016268 C A FAM227A Missense_Mutation p.K324N 0.10 deleterious(0.02) possibly_damaging(0.798) TCGA-C8-A278-01 22 41632585 41632585 G A CHADL Missense_Mutation p.R656W 0.14 deleterious(0) possibly_damaging(0.67) TCGA-C8-A278-01 22 51220689 51220689 C G RABL2B Missense_Mutation p.D12H 0.15 deleterious(0) probably_damaging(0.919) TCGA-C8-A278-01 2 102805555 102805555 T A IL1RL2 Missense_Mutation p.F26L 0.09 tolerated(0.68) benign(0.002) TCGA-C8-A278-01 2 170361595 170361595 C T BBS5 3'UTR 0.14 TCGA-C8-A278-01 2 179598483 179598483 G A TTN Silent p.D5211D 0.08 TCGA-C8-A278-01 2 215823013 215823013 G A ABCA12 Silent p.F2035F 0.07 TCGA-C8-A278-01 2 37458853 37458853 G A NDUFAF7 Missense_Mutation p.S2N 0.30 tolerated_low_confidence(0.41) benign(0.002) TCGA-C8-A278-01 3 130345341 130345341 G C COL6A6 Missense_Mutation p.D1631H 0.08 tolerated(0.17) probably_damaging(0.963) TCGA-C8-A278-01 3 151095945 151095945 A C MED12L Silent p.R1453R 0.10 TCGA-C8-A278-01 3 178952063 178952063 A G PIK3CA Missense_Mutation p.M1040V 0.22 tolerated(0.19) benign(0.014) TCGA-C8-A278-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.21 tolerated(0.44) benign(0.085) TCGA-C8-A278-01 4 39881426 39881426 T G PDS5A Silent p.S638S 0.10 TCGA-C8-A278-01 6 27420554 27420554 T - ZNF184 Frame_Shift_Del p.S262Vfs*5 0.20 TCGA-C8-A278-01 6 497489 497489 C T EXOC2 Missense_Mutation p.V813M 0.30 deleterious(0) possibly_damaging(0.648) TCGA-C8-A278-01 7 158664211 158664211 G A WDR60 Missense_Mutation p.D150N 0.18 deleterious(0.05) benign(0.018) TCGA-C8-A278-01 7 35712884 35712884 G A HERPUD2 Missense_Mutation p.T51M 0.10 deleterious(0.03) probably_damaging(0.932) TCGA-C8-A278-01 8 141381127 141381127 G C TRAPPC9 Nonsense_Mutation p.Y527* 0.07 TCGA-C8-A278-01 8 97345793 97345793 G A PTDSS1 Silent p.%3D 0.11 TCGA-C8-A278-01 9 66466684 66466684 C T RP11-262H14.1 RNA 0.27 TCGA-C8-A278-01 X 102755198 102755198 T G RAB40A Missense_Mutation p.I163L 0.22 deleterious(0) benign(0.259) TCGA-C8-A278-01 X 1404795 1404795 C G CSF2RA Missense_Mutation p.N67K 0.06 tolerated(1) benign(0.002) TCGA-C8-A278-01 X 152027418 152027418 C A NSDHL Silent p.G124G 0.07 TCGA-C8-A278-01 X 2945469 2945469 C G ARSH Missense_Mutation p.I384M 0.07 deleterious(0.04) possibly_damaging(0.56) TCGA-C8-A27A-01 10 12259451 12259451 G A CDC123 Missense_Mutation p.R142H 0.13 tolerated(1) benign(0.001) TCGA-C8-A27A-01 10 78637595 78637595 T A KCNMA1 Missense_Mutation p.I1136F 0.12 deleterious_low_confidence(0.02) benign(0.1) TCGA-C8-A27A-01 11 100962590 100962590 A G PGR Missense_Mutation p.C603R 0.86 deleterious(0) probably_damaging(0.999) TCGA-C8-A27A-01 12 117448250 117448250 C T FBXW8 Silent p.D454D 0.20 TCGA-C8-A27A-01 12 85270296 85270296 G A SLC6A15 Missense_Mutation p.R283C 0.31 tolerated(0.05) benign(0.026) TCGA-C8-A27A-01 13 113750743 113750743 G A MCF2L Missense_Mutation p.R1045H 0.35 deleterious(0.02) benign(0) TCGA-C8-A27A-01 14 101349800 101349800 G A RTL1 Silent p.F442F 0.35 TCGA-C8-A27A-01 17 25965319 25965319 G A LGALS9 Missense_Mutation p.G24S 0.41 tolerated(0.09) possibly_damaging(0.671) TCGA-C8-A27A-01 17 7578253 7578253 C A TP53 Missense_Mutation p.G199V 0.87 deleterious(0) probably_damaging(1) TCGA-C8-A27A-01 17 76128531 76128531 C G TMC8 Missense_Mutation p.F130L 0.51 tolerated(0.17) benign(0.009) TCGA-C8-A27A-01 18 28934500 28934500 G A DSG1 Missense_Mutation p.E781K 0.17 tolerated(0.29) possibly_damaging(0.773) TCGA-C8-A27A-01 18 39629632 39629632 C G PIK3C3 Intron 0.11 TCGA-C8-A27A-01 19 10224638 10224638 G C P2RY11 Missense_Mutation p.V117L 0.74 deleterious(0.02) possibly_damaging(0.61) TCGA-C8-A27A-01 1 178421557 178421557 C T RASAL2 Silent p.F593F 0.17 TCGA-C8-A27A-01 20 20527462 20527462 C T RALGAPA2 Silent p.T1057T 0.40 TCGA-C8-A27A-01 20 58330370 58330370 G A PHACTR3 Silent p.Q164Q 0.24 TCGA-C8-A27A-01 2 232320764 232320764 G A NCL Missense_Mutation p.R597W 0.59 benign(0.362) TCGA-C8-A27A-01 2 234545248 234545248 A T UGT1A10 Missense_Mutation p.K27M 0.15 deleterious(0) probably_damaging(0.971) TCGA-C8-A27A-01 2 73677593 73677593 T G ALMS1 Silent p.V1312V 0.37 TCGA-C8-A27A-01 2 73677599 73677599 G T ALMS1 Silent p.A1314A 0.37 TCGA-C8-A27A-01 3 105238944 105238944 G A ALCAM Missense_Mutation p.G36E 0.14 deleterious(0) probably_damaging(1) TCGA-C8-A27A-01 3 99568867 99568867 G A FILIP1L Silent p.T551T 0.39 TCGA-C8-A27A-01 4 68221 68221 C A Z95704.1 3'Flank 0.24 TCGA-C8-A27A-01 5 111615976 111615976 C T EPB41L4A Silent p.L83L 0.17 TCGA-C8-A27A-01 5 16479058 16479058 C T FAM134B Missense_Mutation p.D237N 0.25 tolerated(0.13) possibly_damaging(0.808) TCGA-C8-A27A-01 5 176396604 176396604 T C UIMC1 Missense_Mutation p.E154G 0.13 tolerated(0.33) benign(0.135) TCGA-C8-A27A-01 6 32029275 32029275 A G TNXB Missense_Mutation p.V2464A 0.46 probably_damaging(0.954) TCGA-C8-A27A-01 6 3324112 3324112 C T SLC22A23 Silent p.Q346Q 0.21 TCGA-C8-A27A-01 7 100364729 100364729 G A ZAN Missense_Mutation p.R1570Q 0.10 unknown(0) TCGA-C8-A27A-01 7 150746033 150746033 G A ASIC3 Missense_Mutation p.A21T 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A27A-01 7 93519525 93519525 C A TFPI2 Silent p.L65L 0.20 TCGA-C8-A27A-01 8 65509427 65509427 T C CYP7B1 Silent p.R431R 0.05 TCGA-C8-A27A-01 8 65509448 65509448 C A CYP7B1 Missense_Mutation p.K424N 0.05 deleterious(0.04) probably_damaging(0.994) TCGA-C8-A27A-01 8 69381036 69381036 C G C8orf34 Silent p.A239A 0.23 TCGA-C8-A27A-01 8 86569860 86569860 A C REXO1L1P 3'UTR 0.08 TCGA-C8-A27A-01 8 87410839 87410839 G A WWP1 Missense_Mutation p.G171R 0.04 tolerated(0.2) benign(0.009) TCGA-C8-A27A-01 8 91937816 91937816 C T NECAB1 Missense_Mutation p.S183L 0.07 tolerated(0.36) benign(0.007) TCGA-C8-A27A-01 8 99168386 99168386 C G POP1 Nonsense_Mutation p.Y722* 0.11 TCGA-C8-A27A-01 9 79319916 79319916 C G PRUNE2 Missense_Mutation p.R2425T 0.37 tolerated(0.11) benign(0.059) TCGA-C8-A27A-01 X 70344921 70344921 G T MED12 Missense_Mutation p.K717N 0.19 benign(0.217) TCGA-C8-A27B-01 10 100017441 100017441 C G LOXL4 Missense_Mutation p.R409T 0.66 deleterious(0.01) possibly_damaging(0.857) TCGA-C8-A27B-01 10 1229268 1229268 C T ADARB2 Missense_Mutation p.M695I 0.09 tolerated(0.3) benign(0.047) TCGA-C8-A27B-01 10 124389917 124389917 C G DMBT1 Missense_Mutation p.S1850C 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-C8-A27B-01 10 51592391 51592391 C G TIMM23 3'UTR 0.58 TCGA-C8-A27B-01 10 75435124 75435124 C G AGAP5 Missense_Mutation p.D432H 0.29 deleterious(0) probably_damaging(1) TCGA-C8-A27B-01 10 82264498 82264498 C G TSPAN14 Silent p.V32V 0.22 TCGA-C8-A27B-01 11 105929688 105929688 C G KBTBD3 Missense_Mutation p.R46T 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-C8-A27B-01 11 118344879 118344879 C G KMT2A Missense_Mutation p.S1002C 0.52 possibly_damaging(0.694) TCGA-C8-A27B-01 11 2167538 2167538 C T INS-IGF2 3'Flank 0.26 TCGA-C8-A27B-01 11 45891248 45891248 G C CRY2 Missense_Mutation p.W379C 0.14 deleterious(0) probably_damaging(0.995) TCGA-C8-A27B-01 11 47814408 47814408 G A NUP160 Missense_Mutation p.A1127V 0.42 deleterious(0) probably_damaging(0.925) TCGA-C8-A27B-01 11 56310392 56310392 C A OR5M11 Silent p.L114L 0.39 TCGA-C8-A27B-01 11 57177571 57177571 G A SLC43A3 Missense_Mutation p.L362F 0.35 deleterious(0) possibly_damaging(0.897) TCGA-C8-A27B-01 11 69950207 69950207 C G ANO1 Missense_Mutation p.Q215E 0.38 tolerated(0.94) benign(0.175) TCGA-C8-A27B-01 11 73718048 73718048 C T UCP3 Missense_Mutation p.A14T 0.48 tolerated(0.28) benign(0.005) TCGA-C8-A27B-01 11 76903310 76903310 A G MYO7A Missense_Mutation p.Y1380C 0.16 deleterious(0) probably_damaging(0.999) TCGA-C8-A27B-01 11 86056410 86056410 C G C11orf73 Intron 0.31 TCGA-C8-A27B-01 12 102056175 102056175 G C MYBPC1 Missense_Mutation p.W666S 0.19 deleterious(0) probably_damaging(1) TCGA-C8-A27B-01 12 49994357 49994357 C G FAM186B Missense_Mutation p.E356Q 0.24 tolerated(0.09) possibly_damaging(0.853) TCGA-C8-A27B-01 12 56721845 56721845 C G PAN2 Missense_Mutation p.E195D 0.21 tolerated(0.75) benign(0.001) TCGA-C8-A27B-01 12 6710551 6710551 C G CHD4 Missense_Mutation p.A235P 0.71 tolerated_low_confidence(0.16) possibly_damaging(0.908) TCGA-C8-A27B-01 12 6711295 6711295 G T CHD4 Missense_Mutation p.P90Q 0.36 tolerated_low_confidence(0.62) benign(0.009) TCGA-C8-A27B-01 13 25428135 25428135 A G RNF17 Missense_Mutation p.K1155E 0.38 tolerated(0.23) benign(0.037) TCGA-C8-A27B-01 13 36909960 36909960 T G SPG20 Missense_Mutation p.Q3P 0.20 deleterious_low_confidence(0.04) benign(0.003) TCGA-C8-A27B-01 13 37011769 37011777 ATCACAAGA - CCNA1 In_Frame_Del p.T102_I104del 0.36 TCGA-C8-A27B-01 13 39542611 39542611 C G STOML3 Missense_Mutation p.D193H 0.15 deleterious(0.01) probably_damaging(1) TCGA-C8-A27B-01 14 29237121 29237121 G T FOXG1 Missense_Mutation p.M212I 0.25 deleterious(0.04) possibly_damaging(0.859) TCGA-C8-A27B-01 14 60212735 60212737 CTC - RTN1 In_Frame_Del p.G235del 0.57 TCGA-C8-A27B-01 14 60752569 60752569 C G PPM1A Intron 0.42 TCGA-C8-A27B-01 15 37390202 37390202 C T MEIS2 Missense_Mutation p.D71N 0.42 tolerated(0.06) benign(0.425) TCGA-C8-A27B-01 15 48413271 48413271 G A SLC24A5 Silent p.A10A 0.29 TCGA-C8-A27B-01 15 65471352 65471352 G C CLPX Missense_Mutation p.S93C 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-C8-A27B-01 15 70979931 70979949 GACATATTGTTGGCCTACT AA UACA Frame_Shift_Del p.S178Lfs*6 0.34 TCGA-C8-A27B-01 15 73428353 73428353 G C NEO1 Missense_Mutation p.E334Q 0.61 tolerated(0.3) benign(0.01) TCGA-C8-A27B-01 15 79178563 79178563 C G MORF4L1 Missense_Mutation p.A118G 0.55 deleterious(0) possibly_damaging(0.573) TCGA-C8-A27B-01 15 84241415 84241415 C T SH3GL3 Nonsense_Mutation p.Q144* 0.18 TCGA-C8-A27B-01 15 89838218 89838218 G C FANCI Silent p.V843V 0.32 TCGA-C8-A27B-01 15 99759224 99759224 C G TTC23 Missense_Mutation p.E112Q 0.20 deleterious(0.01) probably_damaging(0.948) TCGA-C8-A27B-01 16 2339579 2339579 G T ABCA3 Silent p.I852I 0.38 TCGA-C8-A27B-01 16 69959226 69959226 C G WWP2 Intron 0.25 TCGA-C8-A27B-01 16 88875952 88875952 C T APRT 3'UTR 0.40 TCGA-C8-A27B-01 17 10222306 10222306 C T MYH13 Missense_Mutation p.R1180K 0.70 deleterious(0.01) benign(0.301) TCGA-C8-A27B-01 17 27022374 27022374 G C SUPT6H Missense_Mutation p.G1260A 0.38 deleterious(0.02) probably_damaging(0.919) TCGA-C8-A27B-01 17 33884544 33884544 C G SLFN14 Missense_Mutation p.E180Q 0.22 tolerated(0.08) possibly_damaging(0.848) TCGA-C8-A27B-01 17 38922738 38922738 T C KRT26 3'UTR 0.06 TCGA-C8-A27B-01 17 40030139 40030139 C G ACLY Missense_Mutation p.G856A 0.26 deleterious(0) probably_damaging(0.999) TCGA-C8-A27B-01 17 40030212 40030212 C G ACLY Missense_Mutation p.G832R 0.45 deleterious(0.02) probably_damaging(1) TCGA-C8-A27B-01 17 43323949 43323949 G A FMNL1 Missense_Mutation p.E1097K 0.33 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-C8-A27B-01 17 45689957 45689957 C G NPEPPS Missense_Mutation p.L743V 0.31 deleterious(0) possibly_damaging(0.859) TCGA-C8-A27B-01 17 53063569 53063569 T G STXBP4 5'UTR 0.59 TCGA-C8-A27B-01 17 60484535 60484535 G C EFCAB3 Missense_Mutation p.E329Q 0.23 deleterious(0.01) probably_damaging(0.976) TCGA-C8-A27B-01 17 61898796 61898796 C G FTSJ3 Missense_Mutation p.E602Q 0.27 tolerated(0.27) benign(0.051) TCGA-C8-A27B-01 17 7125548 7125548 G C ACADVL Missense_Mutation p.D292H 0.21 deleterious(0) probably_damaging(0.984) TCGA-C8-A27B-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.63 deleterious(0) probably_damaging(1) TCGA-C8-A27B-01 17 953383 953383 C T ABR Silent p.R566R 0.37 TCGA-C8-A27B-01 18 14105980 14105980 C G ZNF519 Missense_Mutation p.E187Q 0.21 deleterious(0) benign(0.03) TCGA-C8-A27B-01 18 21197771 21197771 C G ANKRD29 Missense_Mutation p.L216F 0.20 tolerated(1) benign(0.025) TCGA-C8-A27B-01 18 9887863 9887863 C A TXNDC2 Missense_Mutation p.L463M 0.34 deleterious(0) probably_damaging(0.999) TCGA-C8-A27B-01 19 17972952 17972952 G A RPL18A Missense_Mutation p.R83H 0.50 tolerated(0.07) benign(0.333) TCGA-C8-A27B-01 19 19681043 19681043 G C PBX4 Silent p.V169V 0.12 TCGA-C8-A27B-01 19 21992075 21992075 T C ZNF43 Missense_Mutation p.Y255C 0.18 deleterious(0) possibly_damaging(0.497) TCGA-C8-A27B-01 19 4793084 4793084 C G FEM1A Missense_Mutation p.F406L 0.56 deleterious(0) possibly_damaging(0.476) TCGA-C8-A27B-01 19 5832255 5832255 G C FUT6 Missense_Mutation p.H108Q 0.69 deleterious(0) probably_damaging(0.918) TCGA-C8-A27B-01 19 58371075 58371075 G C ZNF587 Missense_Mutation p.G432A 0.30 tolerated(0.05) probably_damaging(0.94) TCGA-C8-A27B-01 19 6183146 6183146 C G ACSBG2 Missense_Mutation p.I395M 0.32 tolerated(0.11) benign(0.315) TCGA-C8-A27B-01 19 7030637 7030637 G A MBD3L5 Silent p.A5A 0.20 TCGA-C8-A27B-01 19 9085748 9085748 C T MUC16 Missense_Mutation p.G2023R 0.26 unknown(0) TCGA-C8-A27B-01 19 9677204 9677204 A G ZNF121 Silent p.T195T 0.26 TCGA-C8-A27B-01 1 150525701 150525701 G A ADAMTSL4 Missense_Mutation p.E136K 0.44 tolerated(0.22) benign(0.02) TCGA-C8-A27B-01 1 150940918 150940918 C T CERS2 Missense_Mutation p.A82T 0.25 tolerated(0.13) benign(0.002) TCGA-C8-A27B-01 1 152059851 152059851 C G TCHHL1 Missense_Mutation p.E103Q 0.06 deleterious(0.01) probably_damaging(0.953) TCGA-C8-A27B-01 1 152957724 152957724 G A SPRR1A Silent p.Q6Q 0.14 TCGA-C8-A27B-01 1 153043277 153043277 C T SPRR2B Silent p.Q13Q 0.32 TCGA-C8-A27B-01 1 154543843 154543843 G C CHRNB2 Missense_Mutation p.E182Q 0.08 tolerated(0.31) probably_damaging(0.998) TCGA-C8-A27B-01 1 154960761 154960761 G C FLAD1 Missense_Mutation p.D185H 0.07 deleterious(0) probably_damaging(1) TCGA-C8-A27B-01 1 155450828 155450828 C G ASH1L Missense_Mutation p.L611F 0.19 tolerated_low_confidence(0.11) possibly_damaging(0.545) TCGA-C8-A27B-01 1 156236117 156236117 G T SMG5 Missense_Mutation p.P437H 0.33 tolerated(0.12) benign(0.001) TCGA-C8-A27B-01 1 167865858 167865858 A G ADCY10 Silent p.H238H 0.11 TCGA-C8-A27B-01 1 179064366 179064366 G C TOR3A 3'UTR 0.20 TCGA-C8-A27B-01 1 186266033 186266033 A C PRG4 Missense_Mutation p.Y9S 0.21 possibly_damaging(0.728) TCGA-C8-A27B-01 1 18808277 18808277 G C KLHDC7A Missense_Mutation p.V268L 0.32 deleterious(0.01) benign(0.359) TCGA-C8-A27B-01 1 232940918 232940925 CTCACTGT - MAP10 Frame_Shift_Del p.H51Ffs*34 0.59 TCGA-C8-A27B-01 1 241951206 241951206 T G WDR64 Missense_Mutation p.F911V 0.10 deleterious(0.01) benign(0.26) TCGA-C8-A27B-01 1 41499688 41499688 T C SCMH1 Missense_Mutation p.M561V 0.17 tolerated(0.57) benign(0) TCGA-C8-A27B-01 1 53556433 53556433 G C SLC1A7 Missense_Mutation p.N359K 0.20 tolerated(0.23) probably_damaging(0.936) TCGA-C8-A27B-01 1 89658731 89658731 C G GBP4 Missense_Mutation p.D176H 0.20 tolerated(0.1) benign(0.208) TCGA-C8-A27B-01 1 94343060 94343060 T A DNTTIP2 Missense_Mutation p.E144V 0.12 deleterious(0) probably_damaging(0.965) TCGA-C8-A27B-01 20 1234974 1234974 G A RAD21L1 Missense_Mutation p.R515Q 0.67 tolerated(0.08) benign(0.405) TCGA-C8-A27B-01 20 1961552 1961552 C G PDYN Missense_Mutation p.R61T 0.27 tolerated(0.1) benign(0.093) TCGA-C8-A27B-01 20 23350861 23350861 C T GZF1 Missense_Mutation p.S640F 0.22 deleterious(0) possibly_damaging(0.907) TCGA-C8-A27B-01 20 31374344 31374344 G A DNMT3B Missense_Mutation p.E115K 0.70 tolerated_low_confidence(0.62) probably_damaging(0.977) TCGA-C8-A27B-01 22 19164129 19164129 C T SLC25A1 Missense_Mutation p.G237R 0.61 deleterious(0) probably_damaging(0.943) TCGA-C8-A27B-01 22 19164682 19164682 G C SLC25A1 Silent p.P159P 0.22 TCGA-C8-A27B-01 22 24837096 24837096 G C ADORA2A Missense_Mutation p.R293P 0.28 deleterious(0.04) benign(0.143) TCGA-C8-A27B-01 22 32109100 32109100 T G PRR14L Silent p.R1575R 0.11 TCGA-C8-A27B-01 22 39711522 39711522 C G RPL3 Silent p.L180L 0.31 TCGA-C8-A27B-01 22 41566475 41566475 A C EP300 Missense_Mutation p.H1451P 0.45 probably_damaging(1) TCGA-C8-A27B-01 22 42071108 42071108 C A NHP2L1 Silent p.L72L 0.25 TCGA-C8-A27B-01 22 45740346 45740346 C T SMC1B 3'UTR 0.38 TCGA-C8-A27B-01 22 46761272 46761272 C T CELSR1 Missense_Mutation p.D2804N 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-C8-A27B-01 2 102805699 102805699 C G IL1RL2 Missense_Mutation p.H74Q 0.11 deleterious(0) possibly_damaging(0.765) TCGA-C8-A27B-01 2 234357967 234357967 G A DGKD Silent p.L611L 0.20 TCGA-C8-A27B-01 2 24991255 24991255 G A NCOA1 Missense_Mutation p.E1441K 0.29 deleterious_low_confidence(0) unknown(0) TCGA-C8-A27B-01 2 56145044 56145044 T G EFEMP1 Silent p.A91A 0.40 TCGA-C8-A27B-01 2 56599549 56599549 C A CCDC85A Missense_Mutation p.A463D 0.31 tolerated_low_confidence(0.22) benign(0.253) TCGA-C8-A27B-01 2 73115498 73115498 G A SPR Silent p.V120V 0.14 TCGA-C8-A27B-01 2 89111155 89111155 A C MIR4436A 5'Flank 0.11 TCGA-C8-A27B-01 3 100471647 100471647 C G ABI3BP Missense_Mutation p.L991F 0.15 deleterious(0) probably_damaging(0.969) TCGA-C8-A27B-01 3 113517105 113517105 G C ATP6V1A Missense_Mutation p.D436H 0.13 deleterious(0) probably_damaging(0.996) TCGA-C8-A27B-01 3 121409716 121409716 G A GOLGB1 Missense_Mutation p.S2832F 0.20 probably_damaging(0.978) TCGA-C8-A27B-01 3 121975971 121975992 GCCATAGAGGAGATAAACAGCA - CASR Frame_Shift_Del p.I78Qfs*7 0.41 TCGA-C8-A27B-01 3 126751562 126751562 C A PLXNA1 Silent p.I1826I 0.16 TCGA-C8-A27B-01 3 127327260 127327260 G A MCM2 Silent p.Q379Q 0.25 TCGA-C8-A27B-01 3 128973842 128973842 G A COPG1 Silent p.Q138Q 0.40 TCGA-C8-A27B-01 3 141535617 141535617 G C GRK7 Missense_Mutation p.E463Q 0.18 deleterious(0.01) probably_damaging(0.927) TCGA-C8-A27B-01 3 151163081 151163081 G C IGSF10 Missense_Mutation p.S1563C 0.12 deleterious(0) possibly_damaging(0.789) TCGA-C8-A27B-01 3 171320875 171320875 C G PLD1 Missense_Mutation p.W1073S 0.25 deleterious(0) probably_damaging(0.999) TCGA-C8-A27B-01 3 196281409 196281409 G C WDR53 Silent p.L250L 0.07 TCGA-C8-A27B-01 3 42678814 42678814 A G NKTR Missense_Mutation p.K540E 0.71 deleterious_low_confidence(0.05) unknown(0) TCGA-C8-A27B-01 3 52521224 52521224 C G NISCH Silent p.A572A 0.57 TCGA-C8-A27B-01 3 78656060 78656060 C G ROBO1 Missense_Mutation p.D1523H 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-C8-A27B-01 3 78742501 78742516 ACCCAACTAAAACAAA - ROBO1 Intron 0.49 TCGA-C8-A27B-01 4 1330721 1330721 C T MAEA Silent p.L280L 0.32 TCGA-C8-A27B-01 4 184240911 184240911 G T CLDN22 Missense_Mutation p.P154Q 0.62 deleterious(0) probably_damaging(0.996) TCGA-C8-A27B-01 4 3371866 3371866 C G RGS12 Intron 0.61 TCGA-C8-A27B-01 5 127611744 127611744 C A FBN2 Missense_Mutation p.G2527V 0.23 deleterious(0) probably_damaging(0.998) TCGA-C8-A27B-01 5 136403503 136403503 G C SPOCK1 Missense_Mutation p.H164D 0.41 deleterious(0) possibly_damaging(0.722) TCGA-C8-A27B-01 5 137481544 137481544 G C BRD8 Missense_Mutation p.P1101R 0.64 deleterious(0.03) benign(0.067) TCGA-C8-A27B-01 5 64907435 64907435 G C TRIM23 Missense_Mutation p.H214D 0.20 deleterious(0) probably_damaging(0.994) TCGA-C8-A27B-01 6 111280417 111280417 G T GTF3C6 Missense_Mutation p.D34Y 0.28 deleterious(0) probably_damaging(0.959) TCGA-C8-A27B-01 6 158924012 158924012 A C TULP4 Missense_Mutation p.H1106P 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C8-A27B-01 6 26373224 26373224 G C BTN3A2 Missense_Mutation p.R272T 0.09 deleterious(0.03) benign(0.223) TCGA-C8-A27B-01 6 2840702 2840702 G C SERPINB1 Missense_Mutation p.A40G 0.32 deleterious(0.05) benign(0.228) TCGA-C8-A27B-01 6 28499653 28499653 G C GPX5 Missense_Mutation p.E114Q 0.07 deleterious(0.01) probably_damaging(0.921) TCGA-C8-A27B-01 6 29323322 29323322 G C OR5V1 Silent p.S217S 0.14 TCGA-C8-A27B-01 6 35051198 35051198 C G ANKS1A Missense_Mutation p.S971C 0.25 deleterious(0) probably_damaging(0.997) TCGA-C8-A27B-01 6 43025678 43025688 GCCAAATAAGT - MRPL2 Intron 0.33 TCGA-C8-A27B-01 6 52138116 52138116 C G MCM3 Missense_Mutation p.D575H 0.15 tolerated(0.12) benign(0.02) TCGA-C8-A27B-01 6 71508424 71508424 C A SMAP1 Missense_Mutation p.P187Q 0.22 tolerated(0.14) benign(0.16) TCGA-C8-A27B-01 6 7248826 7248826 G C RREB1 Missense_Mutation p.Q1618H 0.15 deleterious(0) probably_damaging(0.998) TCGA-C8-A27B-01 7 120655806 120655806 C G CPED1 Missense_Mutation p.Q113E 0.20 deleterious(0.04) benign(0.03) TCGA-C8-A27B-01 7 120767288 120767288 C A CPED1 Missense_Mutation p.L427I 0.22 tolerated(0.48) benign(0.006) TCGA-C8-A27B-01 7 132470281 132470281 C G CHCHD3 3'UTR 0.29 TCGA-C8-A27B-01 7 2978400 2978400 C G CARD11 Missense_Mutation p.K310N 0.31 deleterious(0.01) possibly_damaging(0.548) TCGA-C8-A27B-01 7 41729394 41729394 G A INHBA Missense_Mutation p.R379W 0.74 deleterious(0) probably_damaging(0.995) TCGA-C8-A27B-01 7 44795851 44795851 G A ZMIZ2 Translation_Start_Site p.M1? 0.68 deleterious_low_confidence(0.02) benign(0.077) TCGA-C8-A27B-01 7 63726567 63726567 T C ZNF679 Missense_Mutation p.C186R 0.50 deleterious(0.01) possibly_damaging(0.802) TCGA-C8-A27B-01 7 82579907 82579907 C A PCLO Nonsense_Mutation p.E3333* 0.28 TCGA-C8-A27B-01 7 82784791 82784791 T G PCLO Missense_Mutation p.K389T 0.22 unknown(0) TCGA-C8-A27B-01 8 103297407 103297407 C T UBR5 Missense_Mutation p.E1882K 0.19 tolerated(0.47) probably_damaging(0.952) TCGA-C8-A27B-01 8 104453690 104453690 C A DCAF13 Nonsense_Mutation p.S517* 0.09 TCGA-C8-A27B-01 8 134266813 134266813 G A NDRG1 Missense_Mutation p.P188L 0.12 tolerated(0.16) probably_damaging(0.994) TCGA-C8-A27B-01 8 146106959 146106959 G A ZNF250 Missense_Mutation p.R542C 0.37 deleterious(0) probably_damaging(0.976) TCGA-C8-A27B-01 8 41790605 41790605 G A KAT6A Silent p.F1711F 0.22 TCGA-C8-A27B-01 9 111903756 111903756 A G FRRS1L Silent p.D243D 0.38 TCGA-C8-A27B-01 9 137687118 137687118 G C COL5A1 Missense_Mutation p.G919A 0.20 unknown(0) TCGA-C8-A27B-01 9 19346465 19346465 G C DENND4C Missense_Mutation p.S1184T 0.30 deleterious(0.01) possibly_damaging(0.889) TCGA-C8-A27B-01 9 37740228 37740228 T A FRMPD1 Missense_Mutation p.V568E 0.55 tolerated(0.89) benign(0.003) TCGA-C8-A27B-01 9 5763167 5763167 G C KIAA1432 Missense_Mutation p.A714P 0.81 deleterious(0) probably_damaging(0.996) TCGA-C8-A27B-01 9 86616601 86616601 G A RMI1 Missense_Mutation p.D234N 0.23 tolerated(0.14) benign(0.01) TCGA-C8-A27B-01 9 97082499 97082499 A T NUTM2F Missense_Mutation p.F453L 0.17 deleterious(0) probably_damaging(0.999) TCGA-C8-A27B-01 X 131212589 131212589 G T FRMD7 Missense_Mutation p.Q486K 0.30 tolerated(0.18) benign(0.234) TCGA-C8-A27B-01 X 150911600 150911600 A T CNGA2 Nonsense_Mutation p.K209* 0.17 TCGA-C8-A27B-01 X 153668821 153668821 C T GDI1 Silent p.Y229Y 0.22 TCGA-C8-A27B-01 X 153924265 153924265 C G GAB3 Missense_Mutation p.R486T 0.14 deleterious(0.02) possibly_damaging(0.806) TCGA-C8-A27B-01 X 16720990 16720990 T G CTPS2 Silent p.S12S 0.29 TCGA-C8-A27B-01 X 29417323 29417323 C G IL1RAPL1 Missense_Mutation p.L201V 0.35 tolerated(0.11) probably_damaging(0.994) TCGA-C8-A27B-01 X 53631744 53631744 A C HUWE1 Missense_Mutation p.S850A 0.29 benign(0.018) TCGA-C8-A27B-01 X 55046843 55046843 C T ALAS2 Missense_Mutation p.E245K 0.27 tolerated(0.52) benign(0.005) TCGA-C8-A3M7-01 10 120801560 120801560 G C EIF3A Missense_Mutation p.P1158A 0.25 tolerated_low_confidence(0.2) possibly_damaging(0.539) TCGA-C8-A3M7-01 10 48385957 48385957 C G RBP3 Missense_Mutation p.L1045F 0.14 deleterious(0) possibly_damaging(0.849) TCGA-C8-A3M7-01 10 56077108 56077108 G A PCDH15 Missense_Mutation p.P267S 0.08 tolerated(0.14) probably_damaging(1) TCGA-C8-A3M7-01 10 5683789 5683789 G T ASB13 Missense_Mutation p.P218Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-C8-A3M7-01 10 71164782 71164782 C G TACR2 Missense_Mutation p.E333Q 0.14 tolerated(0.62) benign(0.042) TCGA-C8-A3M7-01 10 73046505 73046505 C T UNC5B Silent p.L204L 0.19 TCGA-C8-A3M7-01 10 7621822 7621822 G A ITIH5 Silent p.I438I 0.18 TCGA-C8-A3M7-01 11 10528103 10528103 C T AMPD3 3'UTR 0.15 TCGA-C8-A3M7-01 11 105948531 105948531 G A AASDHPPT Missense_Mutation p.E32K 0.24 deleterious(0.01) benign(0.275) TCGA-C8-A3M7-01 11 110333250 110333250 C G FDX1 3'UTR 0.20 TCGA-C8-A3M7-01 11 117063053 117063053 C T SIDT2 Silent p.L652L 0.25 TCGA-C8-A3M7-01 11 118958972 118958972 A G HMBS Missense_Mutation p.N14S 0.25 tolerated(0.12) benign(0.292) TCGA-C8-A3M7-01 11 34184277 34184277 G A ABTB2 Silent p.A688A 0.11 TCGA-C8-A3M7-01 11 3846131 3846131 A G PGAP2 Intron 0.17 TCGA-C8-A3M7-01 11 5862420 5862420 G C OR52E6 Silent p.L236L 0.16 TCGA-C8-A3M7-01 11 62295895 62295895 C T AHNAK Silent p.L1998L 0.18 TCGA-C8-A3M7-01 11 65123363 65123363 G T TIGD3 Missense_Mutation p.K28N 0.37 deleterious(0) probably_damaging(0.941) TCGA-C8-A3M7-01 11 65124541 65124541 G A TIGD3 Missense_Mutation p.R421K 0.32 tolerated(0.92) benign(0) TCGA-C8-A3M7-01 11 65124663 65124663 G C TIGD3 Missense_Mutation p.E462Q 0.21 deleterious(0.05) possibly_damaging(0.858) TCGA-C8-A3M7-01 11 82877653 82877653 C T PCF11 Nonsense_Mutation p.Q572* 0.33 TCGA-C8-A3M7-01 11 83984229 83984229 G A DLG2 Intron 0.13 TCGA-C8-A3M7-01 12 130926638 130926638 G A RIMBP2 Missense_Mutation p.T403M 0.16 deleterious(0.01) probably_damaging(0.97) TCGA-C8-A3M7-01 12 24102495 24102495 C T SOX5 Intron 0.11 TCGA-C8-A3M7-01 12 30848647 30848647 G C IPO8 5'UTR 0.15 TCGA-C8-A3M7-01 12 31135536 31135536 G A TSPAN11 Missense_Mutation p.E176K 0.19 tolerated(0.48) benign(0.311) TCGA-C8-A3M7-01 12 40742252 40742252 G A LRRK2 Missense_Mutation p.E2108K 0.24 deleterious(0.03) probably_damaging(0.923) TCGA-C8-A3M7-01 12 50190646 50190646 C T NCKAP5L Missense_Mutation p.E333K 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.487) TCGA-C8-A3M7-01 12 56713158 56713158 G A PAN2 Silent p.L1072L 0.15 TCGA-C8-A3M7-01 12 57345768 57345768 C T RDH16 3'UTR 0.27 TCGA-C8-A3M7-01 12 6935488 6935488 C A GPR162 Missense_Mutation p.F395L 0.10 tolerated(0.83) benign(0.001) TCGA-C8-A3M7-01 12 81226349 81226349 C A LIN7A Intron 0.23 TCGA-C8-A3M7-01 13 114079385 114079385 A T ADPRHL1 Missense_Mutation p.D252E 0.19 tolerated(0.1) possibly_damaging(0.73) TCGA-C8-A3M7-01 13 38164577 38164577 C T POSTN Missense_Mutation p.E125K 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-C8-A3M7-01 13 39264059 39264059 G A FREM2 Missense_Mutation p.D860N 0.20 tolerated(0.06) benign(0.083) TCGA-C8-A3M7-01 14 64547350 64547350 G A SYNE2 Silent p.L3780L 0.20 TCGA-C8-A3M7-01 14 75544334 75544334 G A ZC2HC1C 3'UTR 0.16 TCGA-C8-A3M7-01 14 95934203 95934203 C T SYNE3 Silent p.G82G 0.18 TCGA-C8-A3M7-01 15 101887939 101887939 C T PCSK6 Intron 0.19 TCGA-C8-A3M7-01 15 22933648 22933648 G A CYFIP1 Silent p.K219K 0.16 TCGA-C8-A3M7-01 15 34123205 34123205 C T RYR3 Silent p.D3792D 0.12 TCGA-C8-A3M7-01 15 34455763 34455763 C T KATNBL1 Missense_Mutation p.E39K 0.22 deleterious(0.03) possibly_damaging(0.471) TCGA-C8-A3M7-01 15 40683726 40683726 G A KNSTRN Missense_Mutation p.E240K 0.20 tolerated(0.27) benign(0.311) TCGA-C8-A3M7-01 15 44063513 44063513 C G PDIA3 3'UTR 0.24 TCGA-C8-A3M7-01 15 48829850 48829850 G A FBN1 Missense_Mutation p.R232C 0.33 probably_damaging(0.999) TCGA-C8-A3M7-01 15 69004035 69004035 G A CORO2B Missense_Mutation p.R213H 0.17 tolerated(0.11) benign(0.001) TCGA-C8-A3M7-01 15 77906037 77906037 C G LINGO1 3'UTR 0.19 TCGA-C8-A3M7-01 16 1278415 1278415 G A TPSB2 3'UTR 0.15 TCGA-C8-A3M7-01 16 15932071 15932071 G A MYH11 Silent p.F13F 0.08 TCGA-C8-A3M7-01 16 2052577 2052577 G A ZNF598 Missense_Mutation p.R208C 0.20 probably_damaging(0.998) TCGA-C8-A3M7-01 16 2229628 2229628 G A CASKIN1 Silent p.S1247S 0.60 TCGA-C8-A3M7-01 16 24581109 24581109 A G RBBP6 Missense_Mutation p.N1033S 0.50 tolerated_low_confidence(1) unknown(0) TCGA-C8-A3M7-01 16 27078353 27078353 G A C16orf82 RNA 0.30 TCGA-C8-A3M7-01 16 28508289 28508289 G A APOBR Missense_Mutation p.D643N 0.08 tolerated(0.13) possibly_damaging(0.741) TCGA-C8-A3M7-01 16 29852959 29852959 G A MVP Missense_Mutation p.E412K 0.11 deleterious(0) probably_damaging(0.972) TCGA-C8-A3M7-01 16 30615847 30615847 G A ZNF689 Missense_Mutation p.S414L 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-C8-A3M7-01 16 31044468 31044468 C G STX4 5'Flank 0.18 TCGA-C8-A3M7-01 16 31473745 31473745 C G ARMC5 Missense_Mutation p.P293A 0.17 tolerated(0.52) benign(0.311) TCGA-C8-A3M7-01 16 4322744 4322744 C A TFAP4 Nonsense_Mutation p.E2* 0.14 TCGA-C8-A3M7-01 16 68846048 68846049 - G CDH1 Frame_Shift_Ins p.Y341Vfs*9 0.21 TCGA-C8-A3M7-01 17 10210333 10210333 G A MYH13 Nonsense_Mutation p.Q1740* 0.25 TCGA-C8-A3M7-01 17 10399279 10399279 G T MYH1 Silent p.L1719L 0.25 TCGA-C8-A3M7-01 17 29585447 29585447 C G NF1 Nonsense_Mutation p.S1420* 0.26 TCGA-C8-A3M7-01 17 29585516 29585516 C G NF1 Nonsense_Mutation p.S1443* 0.23 TCGA-C8-A3M7-01 17 37868193 37868193 C G ERBB2 Missense_Mutation p.S305C 0.33 deleterious(0.02) possibly_damaging(0.84) TCGA-C8-A3M7-01 17 37868682 37868682 C T ERBB2 Silent p.L377L 0.17 TCGA-C8-A3M7-01 17 38172018 38172018 C G CSF3 Missense_Mutation p.L39V 0.24 tolerated(0.52) possibly_damaging(0.735) TCGA-C8-A3M7-01 17 46804342 46804342 G A HOXB13 Missense_Mutation p.P222L 0.15 deleterious(0) probably_damaging(0.999) TCGA-C8-A3M7-01 17 55917255 55917255 C G MRPS23 Missense_Mutation p.L154F 0.25 tolerated(0.07) benign(0.071) TCGA-C8-A3M7-01 17 78261666 78261666 C T RNF213 Missense_Mutation p.S105L 0.17 benign(0.018) TCGA-C8-A3M7-01 18 29890260 29890260 G A GAREM Nonsense_Mutation p.R97* 0.26 TCGA-C8-A3M7-01 19 11032826 11032826 C T CARM1 3'UTR 0.22 TCGA-C8-A3M7-01 19 1390884 1390884 C T NDUFS7 Silent p.P81P 0.21 TCGA-C8-A3M7-01 19 14142743 14142743 T C IL27RA Missense_Mutation p.L20P 0.19 deleterious(0) possibly_damaging(0.902) TCGA-C8-A3M7-01 19 1599413 1599413 G A UQCR11 Intron 0.17 TCGA-C8-A3M7-01 19 39221790 39221790 G A CAPN12 Silent p.F677F 0.27 TCGA-C8-A3M7-01 19 3982831 3982831 C T EEF2 Missense_Mutation p.E196K 0.23 tolerated(0.21) benign(0.057) TCGA-C8-A3M7-01 19 43866249 43866249 C T CD177 3'UTR 0.22 TCGA-C8-A3M7-01 19 43910613 43910613 G A TEX101 5'UTR 0.17 TCGA-C8-A3M7-01 19 43999763 43999763 G A PHLDB3 Silent p.L279L 0.27 TCGA-C8-A3M7-01 19 49228118 49228118 C A RASIP1 Nonsense_Mutation p.G743* 0.10 TCGA-C8-A3M7-01 19 56147007 56147007 C T ZNF581 5'UTR 0.26 TCGA-C8-A3M7-01 19 58058248 58058248 C T ZNF550 3'UTR 0.21 TCGA-C8-A3M7-01 19 5867208 5867208 C T FUT5 Missense_Mutation p.D177N 0.14 deleterious(0) probably_damaging(1) TCGA-C8-A3M7-01 19 58850987 58850987 G C ZSCAN22 3'UTR 0.11 TCGA-C8-A3M7-01 1 102462320 102462320 C G OLFM3 Missense_Mutation p.G18A 0.22 tolerated(0.09) benign(0.014) TCGA-C8-A3M7-01 1 150233919 150233919 G A CA14 Silent p.S46S 0.42 TCGA-C8-A3M7-01 1 151381003 151381003 C T POGZ Missense_Mutation p.D706N 0.21 tolerated(0.14) benign(0.06) TCGA-C8-A3M7-01 1 154108376 154108376 G A NUP210L Missense_Mutation p.S308F 0.14 tolerated(0.3) benign(0.003) TCGA-C8-A3M7-01 1 154248112 154248112 C G HAX1 Missense_Mutation p.P259A 0.09 deleterious(0.04) benign(0.068) TCGA-C8-A3M7-01 1 156564882 156564882 G A GPATCH4 3'Flank 0.21 TCGA-C8-A3M7-01 1 156565376 156565376 G A GPATCH4 Nonsense_Mutation p.Q253* 0.20 TCGA-C8-A3M7-01 1 161137915 161137915 G A PPOX Missense_Mutation p.E157K 0.11 deleterious(0.04) benign(0.233) TCGA-C8-A3M7-01 1 163298074 163298074 C T NUF2 Silent p.F85F 0.17 TCGA-C8-A3M7-01 1 1635286 1635286 C T CDK11A Missense_Mutation p.D630N 0.17 deleterious(0.03) unknown(0) TCGA-C8-A3M7-01 1 166831654 166831654 G A TADA1 Intron 0.19 TCGA-C8-A3M7-01 1 167096565 167096565 G A DUSP27 Missense_Mutation p.E733K 0.21 deleterious(0) probably_damaging(0.998) TCGA-C8-A3M7-01 1 171083178 171083178 G A FMO3 Missense_Mutation p.E287K 0.20 deleterious(0.02) benign(0.101) TCGA-C8-A3M7-01 1 173720969 173720969 G A KLHL20 Missense_Mutation p.E222K 0.09 tolerated(0.29) possibly_damaging(0.908) TCGA-C8-A3M7-01 1 173840037 173840037 G A ZBTB37 Missense_Mutation p.G225E 0.17 tolerated(0.13) benign(0.218) TCGA-C8-A3M7-01 1 186321198 186321198 C A TPR Missense_Mutation p.L793F 0.11 possibly_damaging(0.587) TCGA-C8-A3M7-01 1 20009023 20009023 C G TMCO4 3'UTR 0.23 TCGA-C8-A3M7-01 1 203033081 203033081 C G PPFIA4 Silent p.L494L 0.14 TCGA-C8-A3M7-01 1 207642500 207642500 G A CR2 Missense_Mutation p.R247Q 0.16 tolerated(0.15) benign(0.013) TCGA-C8-A3M7-01 1 211748823 211748823 C T SLC30A1 Silent p.E477E 0.07 TCGA-C8-A3M7-01 1 224463045 224463045 C T NVL Missense_Mutation p.R693Q 0.13 tolerated(0.59) benign(0.016) TCGA-C8-A3M7-01 1 228362606 228362606 C T IBA57 Silent p.L185L 0.14 TCGA-C8-A3M7-01 1 234536980 234536980 G C TARBP1 Missense_Mutation p.Q1340E 0.23 deleterious(0) probably_damaging(0.993) TCGA-C8-A3M7-01 1 240938876 240938876 G A RGS7 3'UTR 0.53 TCGA-C8-A3M7-01 1 241675380 241675380 G C FH Missense_Mutation p.Q148E 0.12 deleterious(0) possibly_damaging(0.894) TCGA-C8-A3M7-01 1 247752204 247752204 C T OR2G2 Silent p.I181I 0.11 TCGA-C8-A3M7-01 1 31406034 31406034 G C PUM1 3'UTR 0.09 TCGA-C8-A3M7-01 1 34258038 34258038 C A CSMD2 Missense_Mutation p.K472N 0.19 deleterious(0.05) possibly_damaging(0.809) TCGA-C8-A3M7-01 1 46654475 46654475 C G POMGNT1 Silent p.L721L 0.26 TCGA-C8-A3M7-01 1 46656456 46656456 C G POMGNT1 Missense_Mutation p.E514Q 0.25 possibly_damaging(0.744) TCGA-C8-A3M7-01 20 1629905 1629905 C G SIRPG Missense_Mutation p.E75Q 0.22 tolerated(0.38) benign(0.147) TCGA-C8-A3M7-01 20 33591329 33591329 G A TRPC4AP Missense_Mutation p.R714W 0.11 deleterious(0) possibly_damaging(0.809) TCGA-C8-A3M7-01 20 3654742 3654742 C T ADAM33 Missense_Mutation p.R236H 0.19 deleterious(0) probably_damaging(1) TCGA-C8-A3M7-01 20 49225878 49225878 C T FAM65C Missense_Mutation p.E194K 0.16 deleterious(0.02) probably_damaging(1) TCGA-C8-A3M7-01 20 51872433 51872433 C A TSHZ2 Silent p.S812S 0.31 TCGA-C8-A3M7-01 20 62275115 62275115 C T STMN3 Silent p.R95R 0.17 TCGA-C8-A3M7-01 20 62585389 62585389 G A AL118506.1 Missense_Mutation p.G128E 0.26 unknown(0) TCGA-C8-A3M7-01 20 858903 858903 G T ANGPT4 Missense_Mutation p.A374E 0.21 tolerated(0.58) benign(0.314) TCGA-C8-A3M7-01 21 30934055 30934055 G A GRIK1 Missense_Mutation p.A749V 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A3M7-01 21 46011676 46011676 C T KRTAP10-6 Silent p.V230V 0.14 TCGA-C8-A3M7-01 22 32588949 32588949 C G RFPL2 Missense_Mutation p.E166Q 0.21 tolerated(0.4) probably_damaging(0.999) TCGA-C8-A3M7-01 22 32891506 32891506 G C FBXO7 Missense_Mutation p.D391H 0.22 deleterious(0) probably_damaging(0.984) TCGA-C8-A3M7-01 22 41753373 41753373 C G ZC3H7B Missense_Mutation p.D958E 0.26 deleterious_low_confidence(0.03) benign(0.005) TCGA-C8-A3M7-01 22 50921701 50921701 G A ADM2 3'UTR 0.29 TCGA-C8-A3M7-01 2 110889333 110889333 G A NPHP1 Missense_Mutation p.S578F 0.17 tolerated(0.65) benign(0.25) TCGA-C8-A3M7-01 2 128260970 128260970 C A IWS1 Nonsense_Mutation p.E468* 0.21 TCGA-C8-A3M7-01 2 168105391 168105391 G A XIRP2 Missense_Mutation p.A2497T 0.22 benign(0.003) TCGA-C8-A3M7-01 2 176948562 176948562 C T EVX2 5'UTR 0.18 TCGA-C8-A3M7-01 2 179700857 179700857 G A CCDC141 Intron 0.25 TCGA-C8-A3M7-01 2 21249816 21249816 G T APOB Silent p.G696G 0.22 TCGA-C8-A3M7-01 2 234581019 234581019 C T UGT1A9 Missense_Mutation p.L147F 0.18 deleterious(0) possibly_damaging(0.905) TCGA-C8-A3M7-01 2 27169887 27169887 G A DPYSL5 3'UTR 0.18 TCGA-C8-A3M7-01 2 27170233 27170233 G C DPYSL5 3'UTR 0.18 TCGA-C8-A3M7-01 2 44047236 44047236 C T ABCG5 Silent p.T489T 0.25 TCGA-C8-A3M7-01 2 69034573 69034573 G C ARHGAP25 Missense_Mutation p.R212T 0.17 deleterious(0) possibly_damaging(0.856) TCGA-C8-A3M7-01 2 85824654 85824654 C T RNF181 3'UTR 0.22 TCGA-C8-A3M7-01 2 98375464 98375464 C T TMEM131 Silent p.R1753R 0.24 TCGA-C8-A3M7-01 3 10089628 10089628 C T FANCD2 Silent p.L436L 0.11 TCGA-C8-A3M7-01 3 119462918 119462918 G A MAATS1 Missense_Mutation p.E593K 0.17 deleterious(0) probably_damaging(0.986) TCGA-C8-A3M7-01 3 130947413 130947413 G A NEK11 Missense_Mutation p.D481N 0.21 deleterious(0) probably_damaging(0.917) TCGA-C8-A3M7-01 3 138738918 138738918 C T PRR23B Missense_Mutation p.E196K 0.19 deleterious(0.03) possibly_damaging(0.5) TCGA-C8-A3M7-01 3 139092649 139092649 T C COPB2 Silent p.G251G 0.17 TCGA-C8-A3M7-01 3 170819401 170819401 C G TNIK Missense_Mutation p.E810Q 0.27 deleterious(0.02) possibly_damaging(0.876) TCGA-C8-A3M7-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.25 tolerated(0.11) possibly_damaging(0.529) TCGA-C8-A3M7-01 3 185765503 185765503 C T ETV5 3'UTR 0.18 TCGA-C8-A3M7-01 3 194062061 194062061 C T CPN2 Silent p.T457T 0.19 TCGA-C8-A3M7-01 3 42835709 42835709 C G HIGD1A Missense_Mutation p.E27Q 0.17 deleterious(0.03) benign(0.34) TCGA-C8-A3M7-01 3 48696551 48696551 G C CELSR3 Missense_Mutation p.Q1173E 0.26 tolerated(0.35) possibly_damaging(0.81) TCGA-C8-A3M7-01 3 52437465 52437465 C T BAP1 Missense_Mutation p.E566K 0.19 tolerated_low_confidence(0.11) benign(0.006) TCGA-C8-A3M7-01 3 52556576 52556576 C T STAB1 Missense_Mutation p.R2206W 0.17 deleterious(0.03) benign(0.014) TCGA-C8-A3M7-01 3 66456365 66456365 C T LRIG1 Intron 0.18 TCGA-C8-A3M7-01 4 119036068 119036068 G A NDST3 Missense_Mutation p.E393K 0.19 tolerated(0.68) benign(0.266) TCGA-C8-A3M7-01 4 134072895 134072895 G C PCDH10 Missense_Mutation p.E534Q 0.24 deleterious(0) probably_damaging(0.964) TCGA-C8-A3M7-01 4 142053860 142053860 C T RNF150 Missense_Mutation p.E35K 0.19 tolerated(0.12) benign(0.166) TCGA-C8-A3M7-01 4 148787878 148787878 C T ARHGAP10 Nonsense_Mutation p.Q205* 0.20 TCGA-C8-A3M7-01 4 155531295 155531295 C T FGG Silent p.E152E 0.14 TCGA-C8-A3M7-01 4 160274934 160274934 G A RAPGEF2 Missense_Mutation p.D1302N 0.13 tolerated_low_confidence(0.82) benign(0.024) TCGA-C8-A3M7-01 4 164272896 164272896 C T NPY5R 3'UTR 0.12 TCGA-C8-A3M7-01 4 174448180 174448180 C G HAND2 3'UTR 0.17 TCGA-C8-A3M7-01 4 36214018 36214018 C T ARAP2 Missense_Mutation p.S378N 0.11 tolerated(0.15) benign(0.101) TCGA-C8-A3M7-01 4 66197647 66197647 C A EPHA5 Intron 0.35 TCGA-C8-A3M7-01 4 68530995 68530995 G A UBA6 Missense_Mutation p.S270F 0.09 deleterious(0) benign(0.396) TCGA-C8-A3M7-01 4 79516556 79516556 A G ANXA3 Missense_Mutation p.K169E 0.17 tolerated(0.87) benign(0.055) TCGA-C8-A3M7-01 4 87197 87197 C T Z95704.2 RNA 0.29 TCGA-C8-A3M7-01 5 132215220 132215220 G C AFF4 3'UTR 0.33 TCGA-C8-A3M7-01 5 133295343 133295343 C - C5orf15 Frame_Shift_Del p.E170Kfs*13 0.11 TCGA-C8-A3M7-01 5 146754671 146754671 G C STK32A Missense_Mutation p.D308H 0.15 deleterious(0) probably_damaging(0.999) TCGA-C8-A3M7-01 5 160716383 160716383 T C GABRB2 3'UTR 0.27 TCGA-C8-A3M7-01 6 107016591 107016591 G C AIM1 3'UTR 0.21 TCGA-C8-A3M7-01 6 153292185 153292185 T C FBXO5 3'UTR 0.36 TCGA-C8-A3M7-01 6 31721124 31721124 C T MSH5 Missense_Mutation p.R287C 0.17 deleterious(0) probably_damaging(1) TCGA-C8-A3M7-01 6 31827913 31827913 G A NEU1 Silent p.F309F 0.18 TCGA-C8-A3M7-01 6 32065108 32065108 C T TNXB Silent p.E174E 0.18 TCGA-C8-A3M7-01 6 32821939 32821939 C T PSMB9 5'UTR 0.10 TCGA-C8-A3M7-01 6 33374170 33374170 C T KIFC1 Silent p.L578L 0.18 TCGA-C8-A3M7-01 6 84375251 84375251 G A SNAP91 Silent p.A60A 0.14 TCGA-C8-A3M7-01 6 87964456 87964456 C T ZNF292 Missense_Mutation p.S370F 0.18 deleterious(0) probably_damaging(0.995) TCGA-C8-A3M7-01 7 100849515 100849515 C A PLOD3 3'UTR 0.14 TCGA-C8-A3M7-01 7 107706818 107706818 C T LAMB4 Missense_Mutation p.E892K 0.13 deleterious(0) probably_damaging(0.914) TCGA-C8-A3M7-01 7 127014569 127014569 G A ZNF800 Missense_Mutation p.S274F 0.12 tolerated(0.08) benign(0.002) TCGA-C8-A3M7-01 7 138738312 138738312 C T ZC3HAV1 Missense_Mutation p.M778I 0.16 deleterious(0.01) benign(0.239) TCGA-C8-A3M7-01 7 138946214 138946214 G C UBN2 Silent p.L374L 0.12 TCGA-C8-A3M7-01 7 149461947 149461947 G A ZNF467 Silent p.C548C 0.42 TCGA-C8-A3M7-01 7 151868351 151868351 G A KMT2C Nonsense_Mutation p.Q3151* 0.18 TCGA-C8-A3M7-01 7 47969108 47969108 C T PKD1L1 Silent p.P251P 0.40 TCGA-C8-A3M7-01 7 57188761 57188761 C T ZNF479 Missense_Mutation p.E121K 0.12 tolerated(0.26) benign(0.01) TCGA-C8-A3M7-01 7 57529366 57529366 G A ZNF716 Missense_Mutation p.R400K 0.19 tolerated(0.4) benign(0.002) TCGA-C8-A3M7-01 7 62752623 62752623 G A ZNF733P RNA 0.07 TCGA-C8-A3M7-01 7 66762213 66762213 C T Y_RNA 3'Flank 0.07 TCGA-C8-A3M7-01 7 73246641 73246641 A T CLDN4 3'UTR 0.07 TCGA-C8-A3M7-01 7 99802301 99802301 C A STAG3 Missense_Mutation p.P952T 0.26 tolerated(0.1) benign(0.036) TCGA-C8-A3M7-01 8 109796528 109796528 G A TMEM74 Missense_Mutation p.S267F 0.21 tolerated(0.58) possibly_damaging(0.759) TCGA-C8-A3M7-01 8 145534897 145534897 C T HSF1 Missense_Mutation p.R176W 0.33 deleterious(0.01) benign(0.337) TCGA-C8-A3M7-01 8 58192367 58192367 G A LINC00588 RNA 0.16 TCGA-C8-A3M7-01 8 70667681 70667681 C T SLCO5A1 Missense_Mutation p.M412I 0.38 tolerated(0.37) benign(0.005) TCGA-C8-A3M7-01 8 95172318 95172318 C T CDH17 Missense_Mutation p.D478N 0.19 deleterious(0) probably_damaging(1) TCGA-C8-A3M7-01 9 100125857 100125857 C T CCDC180 Intron 0.50 TCGA-C8-A3M7-01 9 104153128 104153128 C G MRPL50 Missense_Mutation p.E33Q 0.32 tolerated(0.11) benign(0.069) TCGA-C8-A3M7-01 9 127619046 127619046 G T WDR38 Missense_Mutation p.W218C 0.20 deleterious(0) probably_damaging(1) TCGA-C8-A3M7-01 9 127684133 127684133 T A GOLGA1 Missense_Mutation p.Q200H 0.26 tolerated(0.05) benign(0.043) TCGA-C8-A3M7-01 9 134072929 134072929 A G NUP214 Missense_Mutation p.N1350D 0.12 benign(0.001) TCGA-C8-A3M7-01 9 32631814 32631814 C T TAF1L Missense_Mutation p.R1255Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-C8-A3M7-01 9 72999908 72999908 G A KLF9 3'UTR 0.21 TCGA-C8-A3M7-01 9 73000502 73000502 G A KLF9 3'UTR 0.22 TCGA-C8-A3M7-01 9 96860128 96860128 G A PTPDC1 Nonsense_Mutation p.W425* 0.18 TCGA-C8-A3M7-01 X 10201911 10201911 C T CLCN4 3'UTR 0.23 TCGA-C8-A3M7-01 X 110388139 110388139 G A PAK3 Missense_Mutation p.E110K 0.22 tolerated_low_confidence(0.56) benign(0) TCGA-C8-A3M7-01 X 118227690 118227690 C T KIAA1210 Missense_Mutation p.E475K 0.20 tolerated(0.27) possibly_damaging(0.88) TCGA-C8-A3M7-01 X 131540295 131540295 C T MBNL3 Silent p.Q101Q 0.12 TCGA-C8-A3M7-01 X 134167088 134167088 C T FAM127A 3'UTR 0.10 TCGA-C8-A3M7-01 X 135594142 135594142 C T HTATSF1 Silent p.L746L 0.24 TCGA-C8-A3M7-01 X 155172823 155172823 G A VAMP7 3'UTR 0.24 TCGA-C8-A3M7-01 X 32834743 32834743 C T DMD Missense_Mutation p.M124I 0.07 benign(0.329) TCGA-C8-A3M7-01 X 51487020 51487020 C T GSPT2 Nonsense_Mutation p.Q100* 0.18 TCGA-C8-A3M7-01 X 53262077 53262077 G A IQSEC2 3'UTR 0.12 TCGA-C8-A3M7-01 X 53583280 53583280 C T HUWE1 Intron 0.22 TCGA-C8-A3M7-01 X 63410388 63410388 C A AMER1 Missense_Mutation p.D927Y 0.13 deleterious(0) probably_damaging(0.94) TCGA-C8-A3M7-01 X 70349589 70349589 G A MED12 Missense_Mutation p.E1251K 0.15 benign(0.048) TCGA-C8-A3M7-01 X 71425208 71425208 C T ERCC6L Missense_Mutation p.E1137K 0.07 tolerated(0.14) benign(0.004) TCGA-C8-A3M8-01 10 73491898 73491898 G A CDH23 Silent p.P1295P 0.33 TCGA-C8-A3M8-01 10 75011558 75011558 G A MRPS16 Silent p.C79C 0.29 TCGA-C8-A3M8-01 11 57003436 57003436 G A APLNR Missense_Mutation p.S348L 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-C8-A3M8-01 11 62340150 62340150 C T EEF1G Missense_Mutation p.G26E 0.30 deleterious(0) probably_damaging(0.928) TCGA-C8-A3M8-01 11 68773560 68773560 A C MRGPRF Missense_Mutation p.I73S 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-C8-A3M8-01 11 70336290 70336290 G C SHANK2 Intron 0.16 TCGA-C8-A3M8-01 11 70336336 70336336 G C SHANK2 Intron 0.16 TCGA-C8-A3M8-01 11 70336386 70336386 G C SHANK2 Nonsense_Mutation p.S850* 0.18 TCGA-C8-A3M8-01 12 124111642 124111642 G C EIF2B1 Missense_Mutation p.A144G 0.23 tolerated(0.35) benign(0.01) TCGA-C8-A3M8-01 12 369124 369124 C G SLC6A13 Missense_Mutation p.R32P 0.19 deleterious(0) probably_damaging(1) TCGA-C8-A3M8-01 14 24846879 24846879 C T NFATC4 3'UTR 0.41 TCGA-C8-A3M8-01 15 29398924 29398924 G A APBA2 Missense_Mutation p.A607T 0.22 tolerated(0.07) benign(0.158) TCGA-C8-A3M8-01 15 39874617 39874619 GAA - THBS1 In_Frame_Del p.K99del 0.34 TCGA-C8-A3M8-01 16 18433290 18433290 G T NPIPA8 5'Flank 0.16 TCGA-C8-A3M8-01 16 2142112 2142112 C T PKD1 Missense_Mutation p.V3783I 0.29 benign(0.046) TCGA-C8-A3M8-01 16 67979749 67979749 G T SLC12A4 Missense_Mutation p.T924N 0.24 deleterious(0) probably_damaging(0.955) TCGA-C8-A3M8-01 17 47219489 47219489 C T B4GALNT2 Missense_Mutation p.A163V 0.19 deleterious(0.03) possibly_damaging(0.747) TCGA-C8-A3M8-01 17 48704379 48704379 G A CACNA1G 3'UTR 0.51 TCGA-C8-A3M8-01 17 73487872 73487872 C T KIAA0195 Missense_Mutation p.P496L 0.22 tolerated(0.07) benign(0) TCGA-C8-A3M8-01 17 76794540 76794540 G A USP36 Missense_Mutation p.H1112Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-C8-A3M8-01 17 79479050 79479050 T C ACTG1 Missense_Mutation p.D81G 0.20 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-C8-A3M8-01 18 31685119 31685120 TG - NOL4 Frame_Shift_Del p.S140* 0.26 TCGA-C8-A3M8-01 19 10252733 10252733 C A DNMT1 Missense_Mutation p.G1094C 0.26 deleterious(0) probably_damaging(0.917) TCGA-C8-A3M8-01 19 10935731 10935731 A T DNM2 Splice_Site p.X632_splice 0.28 TCGA-C8-A3M8-01 19 24103009 24103009 T A ZNF726 Intron 0.32 TCGA-C8-A3M8-01 19 42806570 42806570 C G PAFAH1B3 Intron 0.34 TCGA-C8-A3M8-01 19 45391898 45391898 A G PVRL2 3'UTR 0.14 TCGA-C8-A3M8-01 19 50315565 50315565 C T FUZ Silent p.E87E 0.14 TCGA-C8-A3M8-01 19 50436280 50436280 G C ATF5 Missense_Mutation p.E260D 0.26 deleterious(0) probably_damaging(0.992) TCGA-C8-A3M8-01 19 50554082 50554082 C T ZNF473 3'Flank 0.18 TCGA-C8-A3M8-01 19 57649912 57649912 G A ZIM3 Missense_Mutation p.R24W 0.33 tolerated(0.13) benign(0.001) TCGA-C8-A3M8-01 1 1310127 1310127 C G AURKAIP1 Missense_Mutation p.G4R 0.15 tolerated(0.34) benign(0.052) TCGA-C8-A3M8-01 1 156783649 156783649 G T SH2D2A Silent p.L196L 0.24 TCGA-C8-A3M8-01 1 156783650 156783650 A C SH2D2A Missense_Mutation p.L196R 0.24 deleterious(0.02) probably_damaging(0.979) TCGA-C8-A3M8-01 1 15956963 15956963 C G DDI2 Missense_Mutation p.L138V 0.41 tolerated(0.46) benign(0.034) TCGA-C8-A3M8-01 1 175129996 175129996 A C KIAA0040 Missense_Mutation p.W52G 0.14 tolerated(0.12) possibly_damaging(0.803) TCGA-C8-A3M8-01 1 19474500 19474500 T C UBR4 Missense_Mutation p.Y2539C 0.50 benign(0.39) TCGA-C8-A3M8-01 1 200143522 200143522 T A NR5A2 3'UTR 0.15 TCGA-C8-A3M8-01 1 45984654 45984654 A G PRDX1 Missense_Mutation p.M21T 0.23 deleterious(0) possibly_damaging(0.765) TCGA-C8-A3M8-01 20 34297186 34297187 AA - RBM39 Frame_Shift_Del p.F395Cfs*13 0.32 TCGA-C8-A3M8-01 20 40031458 40031458 C A CHD6 3'UTR 0.50 TCGA-C8-A3M8-01 21 43414183 43414183 T - ZBTB21 Frame_Shift_Del p.I8Sfs*10 0.32 TCGA-C8-A3M8-01 21 47966833 47966833 C T DIP2A Silent p.N800N 0.23 TCGA-C8-A3M8-01 22 25264385 25264385 T C SGSM1 Missense_Mutation p.I346T 0.38 deleterious(0.05) benign(0.061) TCGA-C8-A3M8-01 2 190660542 190660542 T C PMS1 Silent p.G60G 0.20 TCGA-C8-A3M8-01 2 227945200 227945200 G A COL4A4 Missense_Mutation p.R588W 0.31 possibly_damaging(0.633) TCGA-C8-A3M8-01 3 178952074 178952074 G C PIK3CA Missense_Mutation p.M1043I 0.74 tolerated(0.11) benign(0.054) TCGA-C8-A3M8-01 3 183752970 183752970 C T HTR3D Missense_Mutation p.H82Y 0.13 tolerated(0.11) possibly_damaging(0.781) TCGA-C8-A3M8-01 5 171290278 171290278 G A FBXW11 3'UTR 0.47 TCGA-C8-A3M8-01 5 56168490 56168491 - A MAP3K1 Frame_Shift_Ins p.R483Kfs*10 0.19 TCGA-C8-A3M8-01 6 168708328 168708328 G A DACT2 Silent p.D703D 0.47 TCGA-C8-A3M8-01 6 18148076 18148076 C T TPMT Missense_Mutation p.G71R 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-C8-A3M8-01 6 27925280 27925280 A G OR2B6 Missense_Mutation p.I88V 0.29 deleterious(0.03) benign(0.001) TCGA-C8-A3M8-01 6 30131731 30131731 C T TRIM15 Silent p.I90I 0.35 TCGA-C8-A3M8-01 6 34502697 34502698 - C PACSIN1 3'UTR 0.31 TCGA-C8-A3M8-01 6 88757665 88757665 G A SPACA1 Missense_Mutation p.M14I 0.50 deleterious_low_confidence(0.01) benign(0) TCGA-C8-A3M8-01 7 151962231 151962231 C G KMT2C Missense_Mutation p.C359S 0.17 probably_damaging(0.997) TCGA-C8-A3M8-01 7 5886722 5886722 C T ZNF815P RNA 0.29 TCGA-C8-A3M8-01 9 127619645 127619645 C G WDR38 Silent p.V257V 0.39 TCGA-C8-A3M8-01 9 130870708 130870708 G C SLC25A25 3'UTR 0.54 TCGA-C8-A3M8-01 9 136505083 136505083 G C DBH Missense_Mutation p.G152A 0.40 tolerated(0.36) benign(0.006) TCGA-C8-A3M8-01 X 106093309 106093309 A G TBC1D8B Missense_Mutation p.Q631R 0.19 tolerated(0.06) possibly_damaging(0.735) TCGA-C8-A3M8-01 X 144911080 144911080 G T TMEM257 3'UTR 0.32 TCGA-C8-A3M8-01 X 153667208 153667208 A T GDI1 Missense_Mutation p.N84I 0.12 deleterious(0) probably_damaging(0.938) TCGA-C8-A3M8-01 X 153940823 153940823 G A GAB3 Silent p.S250S 0.26 TCGA-C8-A3M8-01 X 38178094 38178094 C T RPGR Missense_Mutation p.A153T 0.13 possibly_damaging(0.772) TCGA-C8-A3M8-01 X 47028833 47028833 G A RBM10 Missense_Mutation p.R46H 0.41 deleterious(0) probably_damaging(0.991) TCGA-C8-A3M8-01 X 55248225 55248225 G C PAGE5 Missense_Mutation p.R56P 0.19 tolerated(1) benign(0.003) TCGA-C8-A8HP-01 10 102777862 102777862 C T PDZD7 Missense_Mutation p.E506K 0.06 deleterious_low_confidence(0) benign(0.146) TCGA-C8-A8HP-01 10 105363226 105363226 C G SH3PXD2A Missense_Mutation p.E555D 0.10 tolerated_low_confidence(0.49) benign(0.002) TCGA-C8-A8HP-01 10 29698527 29698527 C G PTCHD3P1 RNA 0.13 TCGA-C8-A8HP-01 10 31607884 31607884 C T ZEB1 5'Flank 0.33 TCGA-C8-A8HP-01 10 50953419 50953419 C T OGDHL Missense_Mutation p.E534K 0.08 deleterious(0.01) possibly_damaging(0.634) TCGA-C8-A8HP-01 10 71868848 71868848 C T H2AFY2 Nonsense_Mutation p.Q280* 0.36 TCGA-C8-A8HP-01 10 74767738 74767738 C G P4HA1 3'UTR 0.43 TCGA-C8-A8HP-01 10 98380163 98380163 G A PIK3AP1 Silent p.F629F 0.12 TCGA-C8-A8HP-01 10 99160214 99160214 C T RRP12 Missense_Mutation p.E73K 0.08 tolerated(0.34) benign(0.003) TCGA-C8-A8HP-01 11 103043912 103043912 C A DYNC2H1 Missense_Mutation p.F1812L 0.08 probably_damaging(1) TCGA-C8-A8HP-01 11 105850833 105850833 C T GRIA4 3'UTR 0.08 TCGA-C8-A8HP-01 11 10876540 10876540 C T ZBED5 5'UTR 0.10 TCGA-C8-A8HP-01 11 117233194 117233194 C T CEP164 Silent p.L209L 0.07 TCGA-C8-A8HP-01 11 30905048 30905048 C T DCDC1 Silent p.L435L 0.10 TCGA-C8-A8HP-01 11 3659831 3659831 C T ART5 3'UTR 0.13 TCGA-C8-A8HP-01 11 60690641 60690641 G C TMEM109 3'UTR 0.08 TCGA-C8-A8HP-01 11 60690810 60690810 G C TMEM109 3'UTR 0.10 TCGA-C8-A8HP-01 11 66618720 66618720 C G PC Missense_Mutation p.D672H 0.10 deleterious(0) probably_damaging(1) TCGA-C8-A8HP-01 11 66618732 66618732 C G PC Missense_Mutation p.E668Q 0.07 tolerated(0.39) benign(0.002) TCGA-C8-A8HP-01 11 69482249 69482249 C G ORAOV1 3'UTR 0.08 TCGA-C8-A8HP-01 11 69482257 69482257 C T ORAOV1 3'UTR 0.08 TCGA-C8-A8HP-01 11 69482288 69482288 C G ORAOV1 Nonstop_Mutation p.*138Sext*84 0.07 TCGA-C8-A8HP-01 11 6953863 6953863 G A ZNF215 Silent p.V120V 0.11 TCGA-C8-A8HP-01 11 75298116 75298116 C G MAP6 Missense_Mutation p.E810D 0.14 tolerated_low_confidence(0.08) probably_damaging(0.956) TCGA-C8-A8HP-01 11 85714416 85714416 C T PICALM Missense_Mutation p.A296T 0.15 tolerated(0.05) benign(0.057) TCGA-C8-A8HP-01 12 104381509 104381509 A G TDG 3'UTR 0.10 TCGA-C8-A8HP-01 12 120794740 120794740 C T MSI1 Missense_Mutation p.G206E 0.18 deleterious(0.01) benign(0.11) TCGA-C8-A8HP-01 12 131275249 131275249 G A STX2 3'Flank 0.14 TCGA-C8-A8HP-01 12 133196895 133196895 C G P2RX2 Missense_Mutation p.I199M 0.09 deleterious(0) probably_damaging(0.991) TCGA-C8-A8HP-01 12 27128563 27128563 C G TM7SF3 Missense_Mutation p.G439A 0.11 deleterious(0.01) probably_damaging(1) TCGA-C8-A8HP-01 12 3040302 3040302 C G TULP3 Missense_Mutation p.Q198E 0.06 deleterious(0.04) benign(0.009) TCGA-C8-A8HP-01 12 52702153 52702153 C T KRT86 Intron 0.08 TCGA-C8-A8HP-01 12 53680352 53680352 G C ESPL1 Missense_Mutation p.G1278R 0.09 tolerated(0.09) benign(0.024) TCGA-C8-A8HP-01 12 70956815 70956815 G A PTPRB Missense_Mutation p.S1326L 0.11 deleterious(0.03) possibly_damaging(0.844) TCGA-C8-A8HP-01 12 70956859 70956859 G A PTPRB Silent p.I1311I 0.08 TCGA-C8-A8HP-01 12 7966835 7966835 C T SLC2A14 3'UTR 0.08 TCGA-C8-A8HP-01 12 93894952 93894952 G T MRPL42 Silent p.R128R 0.16 TCGA-C8-A8HP-01 12 94794703 94794703 G C CCDC41 Missense_Mutation p.L158V 0.07 deleterious(0.04) benign(0.43) TCGA-C8-A8HP-01 13 29598881 29598881 C T MTUS2 Missense_Mutation p.R26W 0.09 deleterious(0) possibly_damaging(0.855) TCGA-C8-A8HP-01 14 105477022 105477022 G T CDCA4 3'UTR 0.28 TCGA-C8-A8HP-01 14 30105498 30105498 G T PRKD1 Silent p.I396I 0.12 TCGA-C8-A8HP-01 14 50159923 50159923 C T KLHDC1 Missense_Mutation p.S4F 0.12 tolerated(0.07) benign(0.001) TCGA-C8-A8HP-01 14 50626519 50626519 C G SOS2 Missense_Mutation p.M494I 0.17 tolerated(0.56) benign(0.023) TCGA-C8-A8HP-01 14 51446222 51446222 G A TRIM9 Silent p.L651L 0.15 TCGA-C8-A8HP-01 15 30025015 30025015 C G TJP1 Missense_Mutation p.E581Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HP-01 15 33952619 33952619 G A RYR3 Silent p.E1539E 0.31 TCGA-C8-A8HP-01 15 41672419 41672419 C G NUSAP1 3'UTR 0.07 TCGA-C8-A8HP-01 15 43784253 43784253 C T TP53BP1 Missense_Mutation p.R78Q 0.10 tolerated(0.95) benign(0.002) TCGA-C8-A8HP-01 15 65620801 65620801 G A IGDCC3 3'UTR 0.05 TCGA-C8-A8HP-01 15 80467429 80467429 G A FAH Silent p.L303L 0.09 TCGA-C8-A8HP-01 16 18875080 18875080 G A SMG1 Missense_Mutation p.S1196L 0.14 tolerated(0.19) benign(0.022) TCGA-C8-A8HP-01 16 2287543 2287543 C G DNASE1L2 Missense_Mutation p.Q162E 0.11 tolerated(0.36) benign(0.002) TCGA-C8-A8HP-01 16 2871561 2871561 C G PRSS21 Silent p.L300L 0.22 TCGA-C8-A8HP-01 16 30077131 30077131 C T ALDOA Intron 0.06 TCGA-C8-A8HP-01 16 47292567 47292567 C T ITFG1 Missense_Mutation p.D436N 0.14 deleterious(0) possibly_damaging(0.556) TCGA-C8-A8HP-01 16 67270540 67270540 A T FHOD1 Silent p.G413G 0.13 TCGA-C8-A8HP-01 16 68289879 68289879 G A PLA2G15 Missense_Mutation p.R238H 0.09 deleterious(0.02) benign(0.159) TCGA-C8-A8HP-01 16 72832304 72832304 C G ZFHX3 Missense_Mutation p.R1426T 0.09 probably_damaging(0.977) TCGA-C8-A8HP-01 16 74404 74404 G A WASH4P 5'Flank 0.04 TCGA-C8-A8HP-01 16 77325276 77325276 G A ADAMTS18 Missense_Mutation p.R1097C 0.11 deleterious(0.05) probably_damaging(0.978) TCGA-C8-A8HP-01 16 7760716 7760716 G A RBFOX1 Missense_Mutation p.R409Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-C8-A8HP-01 16 81077410 81077410 C T ATMIN Missense_Mutation p.S436F 0.21 deleterious(0) probably_damaging(0.954) TCGA-C8-A8HP-01 16 87902558 87902558 G A SLC7A5 Silent p.L157L 0.20 TCGA-C8-A8HP-01 17 1486609 1486611 CTT - SLC43A2 In_Frame_Del p.K413del 0.13 TCGA-C8-A8HP-01 17 25783825 25783825 C T KSR1 Silent p.I52I 0.21 TCGA-C8-A8HP-01 17 26523321 26523321 C G NLK 3'UTR 0.12 TCGA-C8-A8HP-01 17 27233267 27233267 G C PHF12 Silent p.V983V 0.06 TCGA-C8-A8HP-01 17 27233330 27233330 G A PHF12 Silent p.F962F 0.07 TCGA-C8-A8HP-01 17 30195082 30195082 G C UTP6 Missense_Mutation p.Q516E 0.05 tolerated(0.28) benign(0.005) TCGA-C8-A8HP-01 17 30325687 30325687 G A SUZ12 Missense_Mutation p.D629N 0.08 deleterious(0) probably_damaging(0.985) TCGA-C8-A8HP-01 17 32614845 32614845 T A CCL11 3'UTR 0.39 TCGA-C8-A8HP-01 17 3446792 3446792 G A TRPV3 Missense_Mutation p.R148W 0.14 deleterious(0.04) benign(0.011) TCGA-C8-A8HP-01 17 36894682 36894682 C T PCGF2 Missense_Mutation p.R167Q 0.09 tolerated(0.51) benign(0.01) TCGA-C8-A8HP-01 17 38126856 38126856 G A GSDMA Missense_Mutation p.E172K 0.05 tolerated(0.29) benign(0.174) TCGA-C8-A8HP-01 17 38252101 38252101 C G NR1D1 Missense_Mutation p.E282Q 0.55 tolerated(0.11) benign(0.028) TCGA-C8-A8HP-01 17 39241236 39241236 C G KRTAP4-7 3'UTR 0.07 TCGA-C8-A8HP-01 17 62018538 62018538 C G SCN4A Missense_Mutation p.E1702Q 0.14 deleterious(0.02) benign(0.079) TCGA-C8-A8HP-01 17 67075368 67075368 G A ABCA6 Nonsense_Mutation p.Q1579* 0.19 TCGA-C8-A8HP-01 17 72368281 72368281 G A GPR142 Missense_Mutation p.E311K 0.14 tolerated(0.56) benign(0.028) TCGA-C8-A8HP-01 17 74622844 74622844 G A ST6GALNAC1 Silent p.Y400Y 0.11 TCGA-C8-A8HP-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.11 TCGA-C8-A8HP-01 17 79918576 79918576 G C NOTUM Silent p.V70V 0.07 TCGA-C8-A8HP-01 17 906980 906980 G C ABR 3'UTR 0.23 TCGA-C8-A8HP-01 17 962078 962078 G A ABR Silent p.I404I 0.20 TCGA-C8-A8HP-01 18 21600053 21600053 C T TTC39C Intron 0.13 TCGA-C8-A8HP-01 18 25616457 25616457 G A CDH2 Intron 0.13 TCGA-C8-A8HP-01 18 31323249 31323249 C T ASXL3 Missense_Mutation p.S1146F 0.10 benign(0.372) TCGA-C8-A8HP-01 18 46798590 46798590 G C DYM Missense_Mutation p.I403M 0.17 tolerated(0.05) possibly_damaging(0.52) TCGA-C8-A8HP-01 18 56203078 56203078 G A ALPK2 Silent p.I1447I 0.11 TCGA-C8-A8HP-01 18 61379866 61379866 C G SERPINB11 Missense_Mutation p.S99C 0.13 deleterious(0.02) possibly_damaging(0.792) TCGA-C8-A8HP-01 18 63548113 63548113 G C CDH7 Missense_Mutation p.E781Q 0.05 tolerated(0.59) benign(0.015) TCGA-C8-A8HP-01 19 10225333 10225333 G A PPAN-P2RY11 Silent p.K768K 0.19 TCGA-C8-A8HP-01 19 1045143 1045143 C G ABCA7 Missense_Mutation p.P453R 0.11 deleterious(0.01) benign(0.001) TCGA-C8-A8HP-01 19 11624866 11624866 G A ECSIT Silent p.F89F 0.18 TCGA-C8-A8HP-01 19 13207076 13207076 C T NFIX 3'Flank 0.17 TCGA-C8-A8HP-01 19 13208668 13208668 C T NFIX 3'Flank 0.20 TCGA-C8-A8HP-01 19 19657374 19657374 G C CILP2 3'UTR 0.06 TCGA-C8-A8HP-01 19 21477474 21477474 C T ZNF708 Silent p.V98V 0.12 TCGA-C8-A8HP-01 19 21992472 21992472 C T ZNF43 Missense_Mutation p.E123K 0.17 tolerated(0.14) possibly_damaging(0.562) TCGA-C8-A8HP-01 19 3551048 3551048 G T MFSD12 Missense_Mutation p.S148Y 0.19 probably_damaging(0.987) TCGA-C8-A8HP-01 19 36357116 36357116 G A KIRREL2 Missense_Mutation p.E617K 0.13 tolerated(0.26) benign(0.005) TCGA-C8-A8HP-01 19 39788872 39788872 C T IFNL1 Missense_Mutation p.A138V 0.05 deleterious(0.04) benign(0.022) TCGA-C8-A8HP-01 19 39789216 39789216 C A IFNL1 3'UTR 0.06 TCGA-C8-A8HP-01 19 39876617 39876617 G A PAF1 3'UTR 0.19 TCGA-C8-A8HP-01 19 40540805 40540805 G C ZNF780B Nonsense_Mutation p.S654* 0.18 TCGA-C8-A8HP-01 19 42383667 42383667 G A CD79A Missense_Mutation p.E148K 0.07 deleterious(0) probably_damaging(0.95) TCGA-C8-A8HP-01 19 4355168 4355168 G A MPND Missense_Mutation p.E332K 0.09 deleterious(0.05) possibly_damaging(0.896) TCGA-C8-A8HP-01 19 47700592 47700592 C T SAE1 Missense_Mutation p.S279L 0.16 tolerated(0.14) benign(0.031) TCGA-C8-A8HP-01 19 50795640 50795640 G A MYH14 Silent p.L1750L 0.06 TCGA-C8-A8HP-01 19 53668986 53668986 G A ZNF665 Nonsense_Mutation p.Q253* 0.15 TCGA-C8-A8HP-01 19 54650352 54650352 G A CNOT3 Missense_Mutation p.D285N 0.11 deleterious(0.03) possibly_damaging(0.867) TCGA-C8-A8HP-01 19 55147764 55147764 G C AC009892.10 Intron 0.18 TCGA-C8-A8HP-01 19 57133762 57133762 C T ZNF71 Silent p.L369L 0.12 TCGA-C8-A8HP-01 19 58268337 58268337 C T ZNF776 3'UTR 0.11 TCGA-C8-A8HP-01 19 8564065 8564065 C G PRAM1 Missense_Mutation p.L209F 0.06 tolerated(1) benign(0.003) TCGA-C8-A8HP-01 1 100984339 100984339 C G CDC14A 3'UTR 0.11 TCGA-C8-A8HP-01 1 111506249 111506249 G A LRIF1 Missense_Mutation p.S21L 0.07 deleterious(0.01) possibly_damaging(0.519) TCGA-C8-A8HP-01 1 12855773 12855773 C G PRAMEF1 Silent p.L351L 0.04 TCGA-C8-A8HP-01 1 149785129 149785129 C A HIST2H3D Silent p.V36V 0.20 TCGA-C8-A8HP-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.07 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-C8-A8HP-01 1 155160953 155160953 G A MUC1 Silent p.L192L 0.18 TCGA-C8-A8HP-01 1 160648735 160648735 G T CD48 3'UTR 0.24 TCGA-C8-A8HP-01 1 164761911 164761911 A T PBX1 Missense_Mutation p.D149V 0.08 deleterious(0) probably_damaging(1) TCGA-C8-A8HP-01 1 180217511 180217511 G C LHX4 Missense_Mutation p.K56N 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-C8-A8HP-01 1 185902760 185902760 C T HMCN1 Silent p.I544I 0.17 TCGA-C8-A8HP-01 1 18807912 18807912 G C KLHDC7A Missense_Mutation p.R146T 0.06 deleterious(0.02) benign(0.025) TCGA-C8-A8HP-01 1 18810050 18810050 G A KLHDC7A 3'UTR 0.09 TCGA-C8-A8HP-01 1 193045030 193045030 G C TROVE2 Missense_Mutation p.E221Q 0.11 deleterious(0.01) possibly_damaging(0.899) TCGA-C8-A8HP-01 1 197074185 197074185 G T ASPM Missense_Mutation p.T1399K 0.08 deleterious(0.02) probably_damaging(0.956) TCGA-C8-A8HP-01 1 197123351 197123351 G T ZBTB41 3'UTR 0.09 TCGA-C8-A8HP-01 1 198711070 198711070 G C PTPRC Missense_Mutation p.E826Q 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-C8-A8HP-01 1 201052311 201052311 G T CACNA1S Missense_Mutation p.L458I 0.13 tolerated(0.17) benign(0.058) TCGA-C8-A8HP-01 1 202696619 202696619 T A KDM5B 3'UTR 0.17 TCGA-C8-A8HP-01 1 202842712 202842712 C T RP11-480I12.7 RNA 0.10 TCGA-C8-A8HP-01 1 208390593 208390593 G C PLXNA2 Silent p.L225L 0.09 TCGA-C8-A8HP-01 1 210024563 210024563 G A DIEXF Missense_Mutation p.G681D 0.08 deleterious(0) probably_damaging(1) TCGA-C8-A8HP-01 1 225685155 225685155 G C ENAH 3'UTR 0.08 TCGA-C8-A8HP-01 1 226030085 226030085 C G EPHX1 Missense_Mutation p.S317C 0.09 deleterious(0.02) possibly_damaging(0.729) TCGA-C8-A8HP-01 1 226595603 226595603 G C PARP1 Missense_Mutation p.R10G 0.05 deleterious(0.04) benign(0.326) TCGA-C8-A8HP-01 1 227946811 227946811 G A SNAP47 Missense_Mutation p.G250R 0.08 deleterious(0.03) possibly_damaging(0.775) TCGA-C8-A8HP-01 1 27686837 27686837 C G MAP3K6 Missense_Mutation p.E693Q 0.09 deleterious(0.01) possibly_damaging(0.852) TCGA-C8-A8HP-01 1 29445872 29445872 G C EPB41 3'UTR 0.14 TCGA-C8-A8HP-01 1 67108511 67108511 G A SGIP1 Missense_Mutation p.E83K 0.17 deleterious(0.01) probably_damaging(0.952) TCGA-C8-A8HP-01 20 20269334 20269334 C T C20orf26 Nonsense_Mutation p.R960* 0.15 TCGA-C8-A8HP-01 20 48494540 48494540 T G SLC9A8 Silent p.L382L 0.06 TCGA-C8-A8HP-01 20 62384081 62384081 C T ZBTB46 Silent p.G452G 0.09 TCGA-C8-A8HP-01 20 62738055 62738055 G T NPBWR2 Missense_Mutation p.L44I 0.18 tolerated(0.38) benign(0.162) TCGA-C8-A8HP-01 22 19212989 19212989 G A CLTCL1 Silent p.F705F 0.08 TCGA-C8-A8HP-01 22 21141193 21141193 G A SERPIND1 Missense_Mutation p.E447K 0.13 deleterious(0) probably_damaging(1) TCGA-C8-A8HP-01 22 25115421 25115421 C T PIWIL3 3'UTR 0.08 TCGA-C8-A8HP-01 22 25115429 25115429 C T PIWIL3 3'UTR 0.07 TCGA-C8-A8HP-01 22 29833645 29833645 C A RFPL1 5'Flank 0.09 TCGA-C8-A8HP-01 22 36696906 36696906 C G MYH9 Missense_Mutation p.Q943H 0.23 benign(0.053) TCGA-C8-A8HP-01 2 102486235 102486235 C A MAP4K4 Nonsense_Mutation p.S791* 0.09 TCGA-C8-A8HP-01 2 102626100 102626100 G A IL1R2 Silent p.L48L 0.20 TCGA-C8-A8HP-01 2 128044542 128044542 C T ERCC3 Missense_Mutation p.R360H 0.09 tolerated(0.06) probably_damaging(0.99) TCGA-C8-A8HP-01 2 151328146 151328146 C G RND3 Missense_Mutation p.D160H 0.06 deleterious(0) probably_damaging(0.995) TCGA-C8-A8HP-01 2 190660589 190660589 C G PMS1 Nonsense_Mutation p.S76* 0.09 TCGA-C8-A8HP-01 2 202000928 202000928 G A CFLAR Intron 0.19 TCGA-C8-A8HP-01 2 202149974 202149974 G A CASP8 Missense_Mutation p.R472Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HP-01 2 203156056 203156056 G A NOP58 Intron 0.14 TCGA-C8-A8HP-01 2 204193297 204193297 C G ABI2 Missense_Mutation p.F20L 0.05 tolerated(1) benign(0) TCGA-C8-A8HP-01 2 223497938 223497938 G C FARSB Nonsense_Mutation p.S232* 0.16 TCGA-C8-A8HP-01 2 234377142 234377142 C T DGKD Silent p.F1166F 0.12 TCGA-C8-A8HP-01 2 237075028 237075028 C T GBX2 Silent p.P192P 0.09 TCGA-C8-A8HP-01 2 26179268 26179268 G T KIF3C Missense_Mutation p.H531N 0.13 probably_damaging(0.971) TCGA-C8-A8HP-01 2 262414 262414 C G SH3YL1 Intron 0.18 TCGA-C8-A8HP-01 2 27170071 27170071 G A DPYSL5 3'UTR 0.14 TCGA-C8-A8HP-01 2 46612064 46612064 G A EPAS1 3'UTR 0.21 TCGA-C8-A8HP-01 2 54081705 54081705 G A GPR75 Silent p.V63V 0.19 TCGA-C8-A8HP-01 2 71909795 71909795 C T DYSF Silent p.I2103I 0.10 TCGA-C8-A8HP-01 2 73677732 73677732 A G ALMS1 Missense_Mutation p.I1359V 0.06 benign(0.001) TCGA-C8-A8HP-01 2 75907374 75907374 C G GCFC2 Missense_Mutation p.R586T 0.08 tolerated(0.13) benign(0.025) TCGA-C8-A8HP-01 2 86831774 86831774 G A RNF103 Missense_Mutation p.P417L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A8HP-01 2 96952068 96952068 G A SNRNP200 Silent p.F1328F 0.13 TCGA-C8-A8HP-01 3 110611272 110611272 G C RP11-553A10.1 Nonsense_Mutation p.S135* 0.08 TCGA-C8-A8HP-01 3 119236098 119236098 G C TIMMDC1 Missense_Mutation p.E215Q 0.20 deleterious(0) possibly_damaging(0.844) TCGA-C8-A8HP-01 3 123699100 123699100 G A ROPN1 Intron 0.13 TCGA-C8-A8HP-01 3 125647671 125647671 G C ALG1L 3'Flank 0.15 TCGA-C8-A8HP-01 3 128060705 128060705 G A EEFSEC Silent p.L472L 0.11 TCGA-C8-A8HP-01 3 128971526 128971526 C T COPG1 Nonsense_Mutation p.Q78* 0.13 TCGA-C8-A8HP-01 3 142232357 142232357 C G ATR Missense_Mutation p.E1543Q 0.15 tolerated(0.11) possibly_damaging(0.46) TCGA-C8-A8HP-01 3 158787118 158787118 C G IQCJ 5'UTR 0.13 TCGA-C8-A8HP-01 3 195404644 195404644 C G SDHAP2 RNA 0.09 TCGA-C8-A8HP-01 3 195404707 195404707 C T SDHAP2 RNA 0.07 TCGA-C8-A8HP-01 3 37336517 37336517 T A GOLGA4 Missense_Mutation p.F232L 0.09 possibly_damaging(0.891) TCGA-C8-A8HP-01 3 37336525 37336525 C G GOLGA4 Missense_Mutation p.S235C 0.09 benign(0.041) TCGA-C8-A8HP-01 3 54930785 54930785 G A CACNA2D3 Silent p.L752L 0.08 TCGA-C8-A8HP-01 3 57542967 57542967 G A PDE12 Silent p.K287K 0.17 TCGA-C8-A8HP-01 3 93692569 93692569 C T PROS1 Missense_Mutation p.G9R 0.24 tolerated_low_confidence(0.44) unknown(0) TCGA-C8-A8HP-01 4 113359676 113359676 C G ALPK1 Silent p.L1075L 0.08 TCGA-C8-A8HP-01 4 139093133 139093133 C T SLC7A11 Missense_Mutation p.V495I 0.11 tolerated(0.29) benign(0.014) TCGA-C8-A8HP-01 4 2238099 2238099 C G HAUS3 Missense_Mutation p.L478F 0.06 deleterious(0.01) possibly_damaging(0.729) TCGA-C8-A8HP-01 4 3148585 3148585 A G HTT Missense_Mutation p.M1069V 0.13 benign(0.001) TCGA-C8-A8HP-01 4 46264027 46264027 G A GABRA2 Silent p.F325F 0.09 TCGA-C8-A8HP-01 4 68620003 68620003 G C GNRHR Missense_Mutation p.I17M 0.07 tolerated(0.19) benign(0.176) TCGA-C8-A8HP-01 4 71686275 71686275 A C GRSF1 3'UTR 0.13 TCGA-C8-A8HP-01 4 84193269 84193269 C G COQ2 Missense_Mutation p.R250T 0.09 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HP-01 4 95170806 95170806 G A SMARCAD1 Missense_Mutation p.G236E 0.10 tolerated(1) benign(0.033) TCGA-C8-A8HP-01 4 99850308 99850308 G C EIF4E 5'Flank 0.08 TCGA-C8-A8HP-01 4 99850416 99850416 G A EIF4E 5'Flank 0.08 TCGA-C8-A8HP-01 5 139945519 139945519 G T SLC35A4 5'UTR 0.08 TCGA-C8-A8HP-01 5 140589752 140589752 G T PCDHB12 Missense_Mutation p.D425Y 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-C8-A8HP-01 5 140782628 140782628 G A PCDHGA9 Missense_Mutation p.E37K 0.08 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-C8-A8HP-01 5 154394241 154394241 C T KIF4B Silent p.I274I 0.11 TCGA-C8-A8HP-01 5 156945884 156945884 C A ADAM19 Missense_Mutation p.D205Y 0.16 deleterious(0.04) possibly_damaging(0.891) TCGA-C8-A8HP-01 5 179071819 179071819 C G C5orf60 Missense_Mutation p.R68T 0.07 deleterious(0.03) benign(0.065) TCGA-C8-A8HP-01 5 34832545 34832545 G A RAI14 3'Flank 0.15 TCGA-C8-A8HP-01 5 35049422 35049422 G A AGXT2 5'Flank 0.12 TCGA-C8-A8HP-01 5 36686488 36686488 C T SLC1A3 3'UTR 0.15 TCGA-C8-A8HP-01 5 37121875 37121875 G A C5orf42 Missense_Mutation p.S2956F 0.16 deleterious(0) probably_damaging(0.957) TCGA-C8-A8HP-01 5 5262777 5262777 G A ADAMTS16 Missense_Mutation p.M890I 0.16 tolerated(0.52) benign(0.005) TCGA-C8-A8HP-01 5 53751983 53751983 G A HSPB3 Missense_Mutation p.D122N 0.08 tolerated(0.38) benign(0.036) TCGA-C8-A8HP-01 5 56155599 56155599 G C MAP3K1 Missense_Mutation p.E231Q 0.11 deleterious_low_confidence(0.01) benign(0.343) TCGA-C8-A8HP-01 5 68410315 68410315 G A SLC30A5 Missense_Mutation p.D202N 0.07 deleterious(0) benign(0.116) TCGA-C8-A8HP-01 5 79817923 79817923 T G FAM151B Missense_Mutation p.S213A 0.15 tolerated(0.06) benign(0.232) TCGA-C8-A8HP-01 6 109688143 109688143 G A CD164 3'UTR 0.16 TCGA-C8-A8HP-01 6 12120473 12120473 G A HIVEP1 Missense_Mutation p.E149K 0.16 deleterious(0.05) possibly_damaging(0.852) TCGA-C8-A8HP-01 6 132966127 132966127 G C TAAR1 Nonsense_Mutation p.S339* 0.13 TCGA-C8-A8HP-01 6 152639389 152639389 C A SYNE1 Nonsense_Mutation p.E5467* 0.14 TCGA-C8-A8HP-01 6 25450615 25450615 C G LRRC16A Nonsense_Mutation p.S173* 0.20 TCGA-C8-A8HP-01 6 26056153 26056153 C T HIST1H1C Silent p.K168K 0.08 TCGA-C8-A8HP-01 6 28228147 28228147 C G NKAPL Missense_Mutation p.S333C 0.14 deleterious(0) possibly_damaging(0.561) TCGA-C8-A8HP-01 6 30569278 30569278 G A PPP1R10 3'UTR 0.08 TCGA-C8-A8HP-01 6 32138634 32138634 C G AGPAT1 Intron 0.07 TCGA-C8-A8HP-01 6 33989957 33989957 C G GRM4 3'UTR 0.08 TCGA-C8-A8HP-01 6 38758090 38758090 T G DNAH8 Missense_Mutation p.L680R 0.08 probably_damaging(0.948) TCGA-C8-A8HP-01 6 38758091 38758091 C A DNAH8 Silent p.L680L 0.08 TCGA-C8-A8HP-01 6 38831801 38831801 G C DNAH8 Missense_Mutation p.D1938H 0.10 benign(0.208) TCGA-C8-A8HP-01 6 43323522 43323522 G A ZNF318 Missense_Mutation p.S517F 0.16 possibly_damaging(0.891) TCGA-C8-A8HP-01 6 84872884 84872884 C T KIAA1009 Missense_Mutation p.D831N 0.09 tolerated(0.52) benign(0.046) TCGA-C8-A8HP-01 7 100807531 100807531 C A VGF Missense_Mutation p.E198D 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-C8-A8HP-01 7 105636774 105636774 C G CDHR3 Silent p.L229L 0.07 TCGA-C8-A8HP-01 7 107677915 107677915 C T LAMB4 Missense_Mutation p.E1533K 0.10 deleterious(0.02) possibly_damaging(0.656) TCGA-C8-A8HP-01 7 124404574 124404574 C T GPR37 Missense_Mutation p.E153K 0.07 tolerated_low_confidence(0.2) benign(0.002) TCGA-C8-A8HP-01 7 136936015 136936015 G A PTN Missense_Mutation p.S138F 0.09 deleterious(0) probably_damaging(0.977) TCGA-C8-A8HP-01 7 149514780 149514780 C A SSPO RNA 0.09 TCGA-C8-A8HP-01 7 150649666 150649666 G A KCNH2 Silent p.L468L 0.18 TCGA-C8-A8HP-01 7 150725621 150725621 C G ABCB8 Missense_Mutation p.R7G 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-C8-A8HP-01 7 155599475 155599475 C T SHH Intron 0.15 TCGA-C8-A8HP-01 7 27194679 27194679 C T HOXA7 Missense_Mutation p.R181H 0.09 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HP-01 7 30197564 30197564 G A MTURN 3'UTR 0.10 TCGA-C8-A8HP-01 7 31690782 31690782 G A CCDC129 Missense_Mutation p.M896I 0.06 deleterious(0.01) benign(0.302) TCGA-C8-A8HP-01 7 45784595 45784595 C - SEPT7P2 Splice_Site 0.09 TCGA-C8-A8HP-01 7 48427528 48427528 C G ABCA13 Missense_Mutation p.F3815L 0.07 benign(0.01) TCGA-C8-A8HP-01 7 84649581 84649581 C G SEMA3D Missense_Mutation p.E491Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-C8-A8HP-01 8 100791118 100791118 C A VPS13B Missense_Mutation p.F2571L 0.10 tolerated(0.13) benign(0.153) TCGA-C8-A8HP-01 8 124821170 124821170 G A FAM91A1 Silent p.L725L 0.06 TCGA-C8-A8HP-01 8 125571068 125571068 C T MTSS1 Intron 0.17 TCGA-C8-A8HP-01 8 130788435 130788435 G A GSDMC Missense_Mutation p.S106L 0.11 tolerated(0.1) benign(0.392) TCGA-C8-A8HP-01 8 133196524 133196524 G A KCNQ3 Nonsense_Mutation p.R190* 0.13 TCGA-C8-A8HP-01 8 141310680 141310680 G C TRAPPC9 Silent p.L650L 0.12 TCGA-C8-A8HP-01 8 144403390 144403390 C G TOP1MT Missense_Mutation p.R376T 0.11 tolerated(0.54) benign(0.063) TCGA-C8-A8HP-01 8 145106222 145106222 G A OPLAH 3'UTR 0.11 TCGA-C8-A8HP-01 8 35541131 35541131 G A UNC5D Missense_Mutation p.D213N 0.14 deleterious(0.04) benign(0.07) TCGA-C8-A8HP-01 8 41788246 41788246 A T KAT6A 3'UTR 0.34 TCGA-C8-A8HP-01 8 93023292 93023292 G C RUNX1T1 Missense_Mutation p.H177D 0.08 deleterious(0) probably_damaging(0.95) TCGA-C8-A8HP-01 9 104124640 104124640 G A BAAT 3'UTR 0.37 TCGA-C8-A8HP-01 9 128109227 128109227 A T GAPVD1 Intron 0.29 TCGA-C8-A8HP-01 9 139756920 139756920 C T EDF1 Intron 0.07 TCGA-C8-A8HP-01 9 88897374 88897374 C G ISCA1 5'UTR 0.24 TCGA-C8-A8HP-01 X 131520741 131520741 G A MBNL3 Silent p.C290C 0.06 TCGA-C8-A8HP-01 X 148664888 148664888 G C MAGEA9B 5'UTR 0.03 TCGA-C8-A8HP-01 X 2406522 2406522 C T ZBED1 3'UTR 0.17 TCGA-C8-A8HP-01 X 24578911 24578911 C T PCYT1B 3'Flank 0.11 TCGA-C8-A8HP-01 X 306392 306392 C T PPP2R3B Missense_Mutation p.E299K 0.17 deleterious(0) probably_damaging(0.99) TCGA-C8-A8HP-01 X 48888947 48888947 C G TFE3 Missense_Mutation p.E417Q 0.08 deleterious(0) benign(0.001) TCGA-C8-A8HP-01 X 53296173 53296173 C A IQSEC2 Intron 0.08 TCGA-C8-A8HP-01 X 53572033 53572033 C T HUWE1 Missense_Mutation p.E3669K 0.08 unknown(0) TCGA-C8-A8HP-01 X 69424915 69424915 G C DGAT2L6 Missense_Mutation p.E325Q 0.14 tolerated(0.65) benign(0.01) TCGA-C8-A8HP-01 X 70321509 70321509 G T FOXO4 Nonsense_Mutation p.E477* 0.10 TCGA-C8-A8HP-01 X 74376093 74376093 C T ABCB7 Silent p.A5A 0.08 TCGA-C8-A8HP-01 X 77385401 77385401 G A TAF9B 3'UTR 0.12 TCGA-C8-A8HP-01 X 80552779 80552779 A C SH3BGRL 3'UTR 0.11 TCGA-C8-A8HP-01 X 84342711 84342711 G C APOOL 3'UTR 0.12 TCGA-C8-A8HQ-01 10 112764455 112764455 C G SHOC2 Missense_Mutation p.S355C 0.31 tolerated(0.26) benign(0.215) TCGA-C8-A8HQ-01 10 26414534 26414534 C T MYO3A Missense_Mutation p.P704L 0.09 tolerated(0.9) benign(0.004) TCGA-C8-A8HQ-01 10 27375488 27375488 G C ANKRD26 Missense_Mutation p.S230C 0.26 tolerated(0.22) benign(0.142) TCGA-C8-A8HQ-01 10 32873229 32873229 C T C10ORF68 Nonsense_Mutation p.Q14* 0.25 TCGA-C8-A8HQ-01 10 45472747 45472747 C T C10orf10 3'UTR 0.41 TCGA-C8-A8HQ-01 10 55591175 55591175 C T PCDH15 Missense_Mutation p.E1368K 0.22 deleterious(0.02) benign(0.146) TCGA-C8-A8HQ-01 10 64574031 64574031 C A EGR2 Missense_Mutation p.G123W 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-C8-A8HQ-01 10 8115958 8115959 - CT GATA3 Frame_Shift_Ins p.S438Pfs*39 0.27 TCGA-C8-A8HQ-01 10 87898745 87898745 G A GRID1 Missense_Mutation p.S186L 0.23 tolerated(0.07) probably_damaging(0.994) TCGA-C8-A8HQ-01 10 95552597 95552597 G A LGI1 Missense_Mutation p.E201K 0.48 tolerated(0.24) benign(0.003) TCGA-C8-A8HQ-01 10 95994009 95994009 C T PLCE1 Silent p.D718D 0.32 TCGA-C8-A8HQ-01 10 97158937 97158937 G A SORBS1 Missense_Mutation p.S332L 0.40 deleterious_low_confidence(0.03) benign(0.003) TCGA-C8-A8HQ-01 11 100845331 100845331 G C ARHGAP42 Missense_Mutation p.D618H 0.39 tolerated(0.08) possibly_damaging(0.862) TCGA-C8-A8HQ-01 11 113684607 113684607 C A USP28 Missense_Mutation p.Q581H 0.35 deleterious(0) probably_damaging(0.954) TCGA-C8-A8HQ-01 11 118014708 118014708 G A SCN4B Silent p.I101I 0.39 TCGA-C8-A8HQ-01 11 118764585 118764585 G C CXCR5 Missense_Mutation p.G111A 0.44 tolerated(0.53) benign(0.062) TCGA-C8-A8HQ-01 11 118955852 118955852 C T HMBS Intron 0.49 TCGA-C8-A8HQ-01 11 124740549 124740549 G C ROBO3 Missense_Mutation p.D320H 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-C8-A8HQ-01 11 14157080 14157080 C T RNA5SP332 3'Flank 0.35 TCGA-C8-A8HQ-01 11 17393947 17393947 C T NCR3LG1 Missense_Mutation p.P418L 0.25 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-C8-A8HQ-01 11 20178039 20178039 G A DBX1 Silent p.R290R 0.31 TCGA-C8-A8HQ-01 11 3063407 3063407 G A CARS Silent p.L118L 0.21 TCGA-C8-A8HQ-01 11 33211737 33211737 C T CSTF3-AS1 RNA 0.31 TCGA-C8-A8HQ-01 11 34073944 34073944 C G CAPRIN1 Intron 0.21 TCGA-C8-A8HQ-01 11 4510827 4510827 C G OR52K1 Missense_Mutation p.Q233E 0.19 deleterious(0.03) benign(0.155) TCGA-C8-A8HQ-01 11 62296779 62296779 G C AHNAK Missense_Mutation p.H1704D 0.46 benign(0.402) TCGA-C8-A8HQ-01 11 62297335 62297335 G A AHNAK Silent p.F1518F 0.43 TCGA-C8-A8HQ-01 11 64521371 64521371 T A PYGM Missense_Mutation p.I407F 0.45 deleterious(0) probably_damaging(0.954) TCGA-C8-A8HQ-01 11 64521372 64521372 C T PYGM Silent p.E406E 0.45 TCGA-C8-A8HQ-01 11 64575482 64575482 C T MEN1 Missense_Mutation p.E184K 0.48 deleterious(0) probably_damaging(0.969) TCGA-C8-A8HQ-01 11 64988547 64988547 C A SLC22A20 Intron 0.35 TCGA-C8-A8HQ-01 11 65622872 65622872 G A CFL1 Missense_Mutation p.R146C 0.33 tolerated(0.06) benign(0.055) TCGA-C8-A8HQ-01 11 65625734 65625734 G A CFL1 5'UTR 0.35 TCGA-C8-A8HQ-01 11 66461811 66461811 C G SPTBN2 Silent p.V1434V 0.27 TCGA-C8-A8HQ-01 11 6736309 6736309 C T GVINP1 RNA 0.24 TCGA-C8-A8HQ-01 11 85396589 85396589 C G CCDC89 Missense_Mutation p.E195D 0.29 deleterious(0.03) benign(0.055) TCGA-C8-A8HQ-01 11 85397041 85397041 G C CCDC89 Missense_Mutation p.L45V 0.43 tolerated(0.24) probably_damaging(0.998) TCGA-C8-A8HQ-01 12 104698038 104698038 C G EID3 Nonsense_Mutation p.S109* 0.24 TCGA-C8-A8HQ-01 12 108079593 108079593 C T PWP1 5'UTR 0.33 TCGA-C8-A8HQ-01 12 118468998 118468998 C T RFC5 Missense_Mutation p.S313F 0.33 deleterious(0) probably_damaging(0.936) TCGA-C8-A8HQ-01 12 120589028 120589028 G A GCN1L1 Silent p.I1410I 0.28 TCGA-C8-A8HQ-01 12 122150859 122150859 C G TMEM120B Missense_Mutation p.Q20E 0.27 tolerated(0.23) benign(0.02) TCGA-C8-A8HQ-01 12 125510019 125510019 C G BRI3BP 3'UTR 0.23 TCGA-C8-A8HQ-01 12 133758539 133758539 C G ZNF268 5'UTR 0.43 TCGA-C8-A8HQ-01 12 49075795 49075795 G C KANSL2 Intron 0.25 TCGA-C8-A8HQ-01 12 50747654 50747654 C T FAM186A Silent p.Q987Q 0.45 TCGA-C8-A8HQ-01 12 51584176 51584176 C T POU6F1 Missense_Mutation p.E254K 0.27 tolerated(0.06) possibly_damaging(0.605) TCGA-C8-A8HQ-01 12 56737202 56737202 C T STAT2 Missense_Mutation p.D843N 0.37 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-C8-A8HQ-01 12 56818686 56818686 G A TIMELESS Silent p.L576L 0.37 TCGA-C8-A8HQ-01 12 7085527 7085527 G A LPCAT3 3'UTR 0.23 TCGA-C8-A8HQ-01 12 89992967 89992967 A G ATP2B1 Missense_Mutation p.I1093T 0.27 deleterious(0.03) benign(0.156) TCGA-C8-A8HQ-01 12 96330261 96330261 C T CCDC38 Silent p.L9L 0.24 TCGA-C8-A8HQ-01 12 99139033 99139033 C T ANKS1B Intron 0.20 TCGA-C8-A8HQ-01 13 21563182 21563182 A G LATS2 Missense_Mutation p.F246S 0.24 tolerated_low_confidence(0.46) benign(0.079) TCGA-C8-A8HQ-01 13 26793693 26793693 C G RNF6 Missense_Mutation p.E32Q 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-C8-A8HQ-01 13 32835834 32835834 G C FRY Missense_Mutation p.E2500Q 0.33 tolerated(0.68) benign(0.049) TCGA-C8-A8HQ-01 13 33628017 33628017 C T KL Silent p.H311H 0.34 TCGA-C8-A8HQ-01 13 53418925 53418925 G A PCDH8 Missense_Mutation p.R995W 0.30 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HQ-01 13 76415910 76415910 A G LMO7 Silent p.Q1041Q 0.07 TCGA-C8-A8HQ-01 13 96515938 96515938 C G UGGT2 Missense_Mutation p.D1197H 0.22 deleterious(0) possibly_damaging(0.864) TCGA-C8-A8HQ-01 14 100615839 100615839 G A DEGS2 Silent p.F97F 0.41 TCGA-C8-A8HQ-01 14 102469170 102469170 A G DYNC1H1 Missense_Mutation p.K1584R 0.18 benign(0.247) TCGA-C8-A8HQ-01 14 105176459 105176459 G A INF2 Missense_Mutation p.E725K 0.27 deleterious(0) unknown(0) TCGA-C8-A8HQ-01 14 105395132 105395132 G A PLD4 Missense_Mutation p.G111S 0.34 tolerated(0.2) benign(0.024) TCGA-C8-A8HQ-01 14 21821976 21821976 C T SUPT16H Missense_Mutation p.E936K 0.36 tolerated(0.2) benign(0.016) TCGA-C8-A8HQ-01 14 38724818 38724818 G C CLEC14A Missense_Mutation p.S137C 0.27 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HQ-01 14 45693209 45693209 C G MIS18BP1 Missense_Mutation p.D861H 0.23 tolerated(0.06) possibly_damaging(0.456) TCGA-C8-A8HQ-01 14 61190357 61190357 C G SIX4 Missense_Mutation p.E146Q 0.36 deleterious(0) probably_damaging(0.992) TCGA-C8-A8HQ-01 14 75078171 75078171 C T LTBP2 Silent p.P159P 0.33 TCGA-C8-A8HQ-01 14 77253842 77253842 G C ANGEL1 3'UTR 0.19 TCGA-C8-A8HQ-01 15 101588825 101588825 G A LRRK1 Missense_Mutation p.E1088K 0.28 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HQ-01 15 27160008 27160008 G A GABRA5 Missense_Mutation p.A186T 0.31 tolerated(0.24) possibly_damaging(0.728) TCGA-C8-A8HQ-01 15 33359401 33359401 G A FMN1 Missense_Mutation p.R229C 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-C8-A8HQ-01 15 40627340 40627340 C G C15orf52 3'UTR 0.26 TCGA-C8-A8HQ-01 15 40659920 40659920 G T DISP2 Missense_Mutation p.R536L 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-C8-A8HQ-01 15 41750013 41750013 G A RTF1 Missense_Mutation p.E201K 0.32 deleterious(0) possibly_damaging(0.808) TCGA-C8-A8HQ-01 15 43038199 43038199 C G TTBK2 Missense_Mutation p.D1177H 0.24 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-C8-A8HQ-01 15 43571937 43571937 G A TGM7 Missense_Mutation p.R522W 0.39 tolerated(0.1) benign(0.003) TCGA-C8-A8HQ-01 15 44175953 44175953 C G FRMD5 Silent p.L361L 0.26 TCGA-C8-A8HQ-01 15 55611322 55611322 G A PIGB 5'UTR 0.19 TCGA-C8-A8HQ-01 15 65773932 65773932 C T DPP8 Missense_Mutation p.E363K 0.32 deleterious(0.05) probably_damaging(0.998) TCGA-C8-A8HQ-01 15 71124809 71124809 C T LARP6 Missense_Mutation p.R353Q 0.29 tolerated(0.18) probably_damaging(0.956) TCGA-C8-A8HQ-01 15 74625114 74625114 G A CCDC33 Silent p.A622A 0.38 TCGA-C8-A8HQ-01 15 79080706 79080706 G C ADAMTS7 Missense_Mutation p.Q397E 0.27 deleterious(0.02) possibly_damaging(0.887) TCGA-C8-A8HQ-01 15 81585219 81585219 G A IL16 Silent p.L581L 0.32 TCGA-C8-A8HQ-01 16 1291518 1291518 G T TPSAB1 Missense_Mutation p.R106M 0.29 deleterious(0) probably_damaging(0.911) TCGA-C8-A8HQ-01 16 14766480 14766480 G A PLA2G10 Missense_Mutation p.S161L 0.22 tolerated(0.28) benign(0.049) TCGA-C8-A8HQ-01 16 27078520 27078520 G A C16orf82 RNA 0.22 TCGA-C8-A8HQ-01 16 30744728 30744728 C G SRCAP Silent p.L2085L 0.28 TCGA-C8-A8HQ-01 16 30745221 30745221 C G SRCAP Missense_Mutation p.I2167M 0.34 probably_damaging(0.991) TCGA-C8-A8HQ-01 16 31447993 31447993 C G ZNF843 Missense_Mutation p.E60Q 0.32 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-C8-A8HQ-01 16 4935679 4935679 C T PPL Missense_Mutation p.V993M 0.28 tolerated(0.09) benign(0.042) TCGA-C8-A8HQ-01 16 55890306 55890306 G A CES5A Silent p.L399L 0.52 TCGA-C8-A8HQ-01 16 58031470 58031470 G T ZNF319 Missense_Mutation p.L234M 0.58 tolerated(0.11) probably_damaging(0.988) TCGA-C8-A8HQ-01 16 58031745 58031745 G A ZNF319 Missense_Mutation p.S142L 0.41 deleterious(0.01) benign(0.027) TCGA-C8-A8HQ-01 16 66920610 66920610 G C PDP2 3'UTR 0.42 TCGA-C8-A8HQ-01 16 75669873 75669873 C G KARS Missense_Mutation p.E230D 0.39 deleterious(0.05) benign(0.102) TCGA-C8-A8HQ-01 16 7761120 7761120 G C RBFOX1 3'UTR 0.27 TCGA-C8-A8HQ-01 17 10368804 10368804 G - MYH4 Frame_Shift_Del p.H154Ifs*14 0.31 TCGA-C8-A8HQ-01 17 12011117 12011117 G A MAP2K4 Nonsense_Mutation p.W175* 0.39 TCGA-C8-A8HQ-01 17 14005490 14005490 C T COX10 Silent p.D185D 0.38 TCGA-C8-A8HQ-01 17 1939269 1939269 C T DPH1 Missense_Mutation p.T100M 0.42 deleterious(0) probably_damaging(1) TCGA-C8-A8HQ-01 17 2276295 2276295 G C SGSM2 Missense_Mutation p.E613Q 0.46 tolerated(1) benign(0.011) TCGA-C8-A8HQ-01 17 29859378 29859378 C T RAB11FIP4 3'UTR 0.21 TCGA-C8-A8HQ-01 17 3195685 3195685 G A OR3A1 Silent p.F64F 0.36 TCGA-C8-A8HQ-01 17 33348669 33348669 C T RFFL Missense_Mutation p.M104I 0.33 deleterious(0.01) benign(0.04) TCGA-C8-A8HQ-01 17 36863200 36863200 C T MLLT6 Intron 0.34 TCGA-C8-A8HQ-01 17 36882396 36882396 T G MLLT6 3'UTR 0.09 TCGA-C8-A8HQ-01 17 42858317 42858317 G C ADAM11 3'UTR 0.36 TCGA-C8-A8HQ-01 17 45917621 45917621 C T SCRN2 Missense_Mutation p.E98K 0.12 deleterious(0) probably_damaging(1) TCGA-C8-A8HQ-01 17 47127544 47127544 G A IGF2BP1 3'UTR 0.34 TCGA-C8-A8HQ-01 17 48258068 48258068 C G SGCA 3'Flank 0.33 TCGA-C8-A8HQ-01 17 56676429 56676429 C T TEX14 Silent p.E765E 0.32 TCGA-C8-A8HQ-01 17 61995122 61995122 C A GH1 Missense_Mutation p.G152W 0.27 deleterious(0.05) benign(0.002) TCGA-C8-A8HQ-01 17 7495232 7495232 G A FXR2 Silent p.V646V 0.45 TCGA-C8-A8HQ-01 17 78341851 78341851 C A RNF213 Silent p.L4021L 0.33 TCGA-C8-A8HQ-01 18 21441637 21441637 G C LAMA3 Missense_Mutation p.E1484Q 0.28 benign(0.191) TCGA-C8-A8HQ-01 18 23637643 23637643 G A SS18 Missense_Mutation p.P99S 0.20 tolerated_low_confidence(0.86) benign(0.241) TCGA-C8-A8HQ-01 18 2937704 2937704 G A LPIN2 Missense_Mutation p.P385L 0.08 deleterious(0.02) possibly_damaging(0.656) TCGA-C8-A8HQ-01 18 47769402 47769402 C T CCDC11 Missense_Mutation p.D361N 0.24 deleterious(0.04) benign(0.272) TCGA-C8-A8HQ-01 18 67531534 67531534 C T CD226 3'UTR 0.27 TCGA-C8-A8HQ-01 19 10247862 10247862 G A DNMT1 Missense_Mutation p.S1463L 0.36 deleterious(0.01) possibly_damaging(0.662) TCGA-C8-A8HQ-01 19 11435319 11435319 G C RAB3D 3'UTR 0.23 TCGA-C8-A8HQ-01 19 11435986 11435986 G A RAB3D 3'UTR 0.24 TCGA-C8-A8HQ-01 19 11796925 11796925 G C ZNF833P RNA 0.39 TCGA-C8-A8HQ-01 19 11944518 11944518 C A ZNF440 3'UTR 0.19 TCGA-C8-A8HQ-01 19 12126100 12126100 G C ZNF433 Missense_Mutation p.H528D 0.24 deleterious(0) probably_damaging(0.981) TCGA-C8-A8HQ-01 19 12786521 12786521 G C WDR83 3'UTR 0.18 TCGA-C8-A8HQ-01 19 14590221 14590221 C G GIPC1 Intron 0.40 TCGA-C8-A8HQ-01 19 16664393 16664393 C T SLC35E1 3'UTR 0.20 TCGA-C8-A8HQ-01 19 17662786 17662786 C G FAM129C Intron 0.31 TCGA-C8-A8HQ-01 19 18675751 18675751 G A KXD1 Silent p.Q58Q 0.22 TCGA-C8-A8HQ-01 19 313596 313596 C T MIER2 Missense_Mutation p.E235K 0.42 deleterious(0) probably_damaging(0.987) TCGA-C8-A8HQ-01 19 35831832 35831832 G A CD22 Missense_Mutation p.R433Q 0.25 tolerated(0.11) benign(0.393) TCGA-C8-A8HQ-01 19 37904945 37904945 C T ZNF569 Silent p.L205L 0.12 TCGA-C8-A8HQ-01 19 40321043 40321043 G A DYRK1B Missense_Mutation p.S115L 0.21 deleterious(0.02) possibly_damaging(0.669) TCGA-C8-A8HQ-01 19 41251036 41251036 G A C19orf54 Nonsense_Mutation p.Q131* 0.26 TCGA-C8-A8HQ-01 19 44680935 44680935 A G ZNF226 Missense_Mutation p.E507G 0.41 deleterious(0.02) possibly_damaging(0.54) TCGA-C8-A8HQ-01 19 44681569 44681569 G T ZNF226 Missense_Mutation p.Q718H 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-C8-A8HQ-01 19 44988574 44988574 G C ZNF180 Missense_Mutation p.Q69E 0.13 tolerated(0.07) benign(0.13) TCGA-C8-A8HQ-01 19 4546248 4546248 G C SEMA6B Nonsense_Mutation p.S573* 0.21 TCGA-C8-A8HQ-01 19 49148859 49148859 G C CA11 Missense_Mutation p.R11G 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-C8-A8HQ-01 19 49148905 49148905 G A CA11 5'UTR 0.20 TCGA-C8-A8HQ-01 19 49362834 49362834 G A PLEKHA4 Missense_Mutation p.P195L 0.30 deleterious(0.04) benign(0.04) TCGA-C8-A8HQ-01 19 51874910 51874910 G C NKG7 3'UTR 0.17 TCGA-C8-A8HQ-01 19 53652549 53652549 C T ZNF347 Silent p.Q29Q 0.19 TCGA-C8-A8HQ-01 19 55401249 55401249 G C FCAR 3'UTR 0.31 TCGA-C8-A8HQ-01 19 56904823 56904823 C T ZNF582 5'UTR 0.32 TCGA-C8-A8HQ-01 19 56952812 56952812 C G ZNF667 Missense_Mutation p.E518Q 0.33 tolerated(0.87) probably_damaging(0.998) TCGA-C8-A8HQ-01 19 57765878 57765878 G A ZNF805 Missense_Mutation p.R564K 0.34 tolerated(0.41) benign(0.001) TCGA-C8-A8HQ-01 19 58216332 58216332 C G ZNF154 Missense_Mutation p.E17Q 0.35 deleterious(0.01) benign(0.02) TCGA-C8-A8HQ-01 19 58265397 58265397 C G ZNF776 Missense_Mutation p.S300C 0.31 tolerated(0.06) possibly_damaging(0.457) TCGA-C8-A8HQ-01 19 5896936 5896936 C G NDUFA11 Missense_Mutation p.G57A 0.24 tolerated_low_confidence(0.29) probably_damaging(1) TCGA-C8-A8HQ-01 19 6586125 6586125 C T CD70 Missense_Mutation p.R163Q 0.31 tolerated(0.59) benign(0.001) TCGA-C8-A8HQ-01 19 6739788 6739788 G C TRIP10 Missense_Mutation p.E6Q 0.23 tolerated(0.06) benign(0.002) TCGA-C8-A8HQ-01 19 6972334 6972334 G A EMR4P RNA 0.17 TCGA-C8-A8HQ-01 19 7747179 7747179 G A TRAPPC5 Missense_Mutation p.E14K 0.33 deleterious(0) benign(0.3) TCGA-C8-A8HQ-01 19 9061725 9061725 G C MUC16 Missense_Mutation p.S8574C 0.39 unknown(0) TCGA-C8-A8HQ-01 1 154918384 154918384 G A PBXIP1 Missense_Mutation p.S589L 0.37 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HQ-01 1 158047906 158047906 C T KIRREL Missense_Mutation p.R110W 0.27 deleterious(0) probably_damaging(0.954) TCGA-C8-A8HQ-01 1 173010373 173010373 C T TNFSF18 3'UTR 0.09 TCGA-C8-A8HQ-01 1 173872954 173872954 G C SERPINC1 3'UTR 0.19 TCGA-C8-A8HQ-01 1 179887460 179887460 G C TOR1AIP1 3'UTR 0.14 TCGA-C8-A8HQ-01 1 180012230 180012230 G A CEP350 Missense_Mutation p.V1468M 0.20 benign(0.081) TCGA-C8-A8HQ-01 1 182353436 182353436 G C GLUL 3'UTR 0.21 TCGA-C8-A8HQ-01 1 182827896 182827896 T G DHX9 Missense_Mutation p.L310R 0.21 deleterious(0.01) benign(0.1) TCGA-C8-A8HQ-01 1 185183773 185183773 C T SWT1 Nonsense_Mutation p.Q703* 0.16 TCGA-C8-A8HQ-01 1 200941923 200941923 G A KIF21B 3'Flank 0.16 TCGA-C8-A8HQ-01 1 202574741 202574741 C T SYT2 Missense_Mutation p.E54K 0.24 tolerated(0.06) benign(0.292) TCGA-C8-A8HQ-01 1 203689776 203689776 G A ATP2B4 Missense_Mutation p.V836I 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-C8-A8HQ-01 1 207134550 207134550 G C FCAMR Missense_Mutation p.P224R 0.19 deleterious(0.02) probably_damaging(0.966) TCGA-C8-A8HQ-01 1 213031296 213031296 G A FLVCR1 5'Flank 0.07 TCGA-C8-A8HQ-01 1 220928391 220928391 C T MARC2 Silent p.F125F 0.29 TCGA-C8-A8HQ-01 1 235872445 235872445 C G LYST Silent p.G3363G 0.32 TCGA-C8-A8HQ-01 1 235971909 235971909 G A LYST Missense_Mutation p.P737S 0.26 deleterious(0.03) benign(0.144) TCGA-C8-A8HQ-01 1 237788966 237788966 G A RYR2 Missense_Mutation p.E2010K 0.31 possibly_damaging(0.655) TCGA-C8-A8HQ-01 1 27106664 27106686 CAGTTTGCCCTTCAGCTGAAGCC - ARID1A Frame_Shift_Del p.V2093Gfs*49 0.43 TCGA-C8-A8HQ-01 1 40235332 40235332 C T OXCT2 3'UTR 0.10 TCGA-C8-A8HQ-01 1 43396338 43396338 G C SLC2A1 Missense_Mutation p.L159V 0.32 tolerated(0.23) benign(0.059) TCGA-C8-A8HQ-01 1 47728721 47728721 C T STIL Missense_Mutation p.E895K 0.18 deleterious(0.01) probably_damaging(0.925) TCGA-C8-A8HQ-01 1 65300334 65300334 G A JAK1 Nonsense_Mutation p.Q1126* 0.51 TCGA-C8-A8HQ-01 1 94645489 94645489 G A ARHGAP29 Nonsense_Mutation p.R758* 0.46 TCGA-C8-A8HQ-01 20 18477879 18477879 G C RBBP9 5'UTR 0.16 TCGA-C8-A8HQ-01 20 23501592 23501592 C T RP3-333B15.4 5'Flank 0.27 TCGA-C8-A8HQ-01 20 2539349 2539349 G A TMC2 Silent p.R110R 0.33 TCGA-C8-A8HQ-01 20 30252573 30252573 G C BCL2L1 3'UTR 0.36 TCGA-C8-A8HQ-01 20 30253824 30253824 G A BCL2L1 Silent p.F210F 0.37 TCGA-C8-A8HQ-01 20 39752249 39752249 C T TOP1 3'UTR 0.35 TCGA-C8-A8HQ-01 20 44519094 44519094 G A NEURL2 Silent p.N179N 0.24 TCGA-C8-A8HQ-01 20 55967829 55967829 G A RBM38 Silent p.Q119Q 0.22 TCGA-C8-A8HQ-01 20 56284569 56284569 A G PMEPA1 Missense_Mutation p.C24R 0.44 deleterious_low_confidence(0.04) benign(0.112) TCGA-C8-A8HQ-01 20 57415501 57415501 G A RP4-806M20.3 5'Flank 0.34 TCGA-C8-A8HQ-01 20 62365034 62365034 G A ZGPAT Missense_Mutation p.E272K 0.34 deleterious(0.01) benign(0.434) TCGA-C8-A8HQ-01 22 19839502 19839502 C G C22orf29 Missense_Mutation p.D95H 0.34 deleterious(0) probably_damaging(0.982) TCGA-C8-A8HQ-01 22 22677257 22677257 C T IGLV1-51 Silent p.I95I 0.26 TCGA-C8-A8HQ-01 22 29727493 29727493 G - AP1B1 Frame_Shift_Del p.Y824Tfs*77 0.20 TCGA-C8-A8HQ-01 22 30218373 30218373 G C ASCC2 Silent p.L164L 0.24 TCGA-C8-A8HQ-01 22 30683517 30683517 C T GATSL3 Missense_Mutation p.E73K 0.37 tolerated(0.2) benign(0.21) TCGA-C8-A8HQ-01 22 30767685 30767685 G A CCDC157 Silent p.L364L 0.37 TCGA-C8-A8HQ-01 22 30864504 30864504 C G SEC14L3 Missense_Mutation p.Q138H 0.20 deleterious(0.04) probably_damaging(0.971) TCGA-C8-A8HQ-01 22 32815388 32815388 G A BPIFC Silent p.F407F 0.24 TCGA-C8-A8HQ-01 22 36054687 36054687 G A APOL6 Missense_Mutation p.E26K 0.31 deleterious(0.04) probably_damaging(0.914) TCGA-C8-A8HQ-01 22 37538542 37538542 G A IL2RB Nonsense_Mutation p.Q72* 0.20 TCGA-C8-A8HQ-01 22 38082447 38082447 G A NOL12 Silent p.P16P 0.28 TCGA-C8-A8HQ-01 22 38202567 38202567 C T H1F0 3'UTR 0.29 TCGA-C8-A8HQ-01 22 40574144 40574144 G A TNRC6B Missense_Mutation p.R2K 0.18 tolerated_low_confidence(0.08) unknown(0) TCGA-C8-A8HQ-01 22 44287175 44287175 C G PNPLA5 Splice_Site p.X65_splice 0.42 TCGA-C8-A8HQ-01 22 44892893 44892893 G A LDOC1L Missense_Mutation p.R182W 0.38 deleterious(0.02) benign(0.333) TCGA-C8-A8HQ-01 22 50879435 50879435 G A PPP6R2 Silent p.R827R 0.32 TCGA-C8-A8HQ-01 2 101185440 101185440 G C PDCL3 Missense_Mutation p.D61H 0.33 deleterious(0) probably_damaging(0.997) TCGA-C8-A8HQ-01 2 105956141 105956141 G A C2orf49 Silent p.K67K 0.24 TCGA-C8-A8HQ-01 2 112596080 112596080 C G ANAPC1 Missense_Mutation p.E684Q 0.28 tolerated(0.07) benign(0.357) TCGA-C8-A8HQ-01 2 128947439 128947439 G A UGGT1 3'UTR 0.31 TCGA-C8-A8HQ-01 2 136669029 136669029 C A DARS Missense_Mutation p.G422V 0.30 deleterious(0) probably_damaging(1) TCGA-C8-A8HQ-01 2 136669034 136669034 C A DARS Missense_Mutation p.M420I 0.29 tolerated(0.38) benign(0.271) TCGA-C8-A8HQ-01 2 138030140 138030140 C T THSD7B Silent p.I768I 0.28 TCGA-C8-A8HQ-01 2 152326316 152326316 C T RIF1 Missense_Mutation p.P2345S 0.28 deleterious(0) probably_damaging(0.972) TCGA-C8-A8HQ-01 2 154334677 154334677 G C RPRM 3'UTR 0.20 TCGA-C8-A8HQ-01 2 163201025 163201025 G A GCA Intron 0.38 TCGA-C8-A8HQ-01 2 166810281 166810281 G C TTC21B 5'UTR 0.30 TCGA-C8-A8HQ-01 2 18113862 18113862 C G KCNS3 3'UTR 0.22 TCGA-C8-A8HQ-01 2 183730808 183730808 C G FRZB Missense_Mutation p.G158A 0.20 tolerated(0.32) benign(0.01) TCGA-C8-A8HQ-01 2 187371443 187371443 G C ZC3H15 Missense_Mutation p.D324H 0.27 deleterious(0.01) possibly_damaging(0.45) TCGA-C8-A8HQ-01 2 207621680 207621680 C G MDH1B Missense_Mutation p.E119Q 0.35 tolerated(0.24) benign(0.015) TCGA-C8-A8HQ-01 2 207621707 207621707 C G MDH1B Missense_Mutation p.E110Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-C8-A8HQ-01 2 213868126 213868126 C T IKZF2 3'UTR 0.31 TCGA-C8-A8HQ-01 2 219503070 219503070 C T ZNF142 Missense_Mutation p.E1686K 0.24 deleterious_low_confidence(0.01) benign(0.292) TCGA-C8-A8HQ-01 2 220466734 220466734 C G STK11IP Missense_Mutation p.L134V 0.35 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HQ-01 2 228680273 228680273 C G CCL20 Missense_Mutation p.I60M 0.42 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HQ-01 2 231314303 231314303 C G SP100 Nonsense_Mutation p.S205* 0.24 TCGA-C8-A8HQ-01 2 234372923 234372923 C T DGKD Silent p.D1100D 0.28 TCGA-C8-A8HQ-01 2 238436033 238436033 C G MLPH Missense_Mutation p.I298M 0.39 tolerated(0.22) benign(0.025) TCGA-C8-A8HQ-01 2 242438068 242438068 A G STK25 Silent p.S301S 0.21 TCGA-C8-A8HQ-01 2 242684192 242684192 G A D2HGDH Silent p.L251L 0.26 TCGA-C8-A8HQ-01 2 40656310 40656310 G A SLC8A1 Missense_Mutation p.L371F 0.32 deleterious(0.04) possibly_damaging(0.459) TCGA-C8-A8HQ-01 2 47613997 47613997 C T EPCAM 3'UTR 0.27 TCGA-C8-A8HQ-01 2 49217742 49217742 C G FSHR Missense_Mutation p.D137H 0.30 deleterious(0.01) benign(0.254) TCGA-C8-A8HQ-01 2 54081621 54081621 G A GPR75 Silent p.L91L 0.32 TCGA-C8-A8HQ-01 2 64069139 64069139 C G UGP2 5'UTR 0.36 TCGA-C8-A8HQ-01 2 71681189 71681189 G C DYSF Missense_Mutation p.D21H 0.24 deleterious(0.02) benign(0.332) TCGA-C8-A8HQ-01 2 73519316 73519316 G C EGR4 Missense_Mutation p.L347V 0.29 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HQ-01 2 85133607 85133607 G T TMSB10 3'UTR 0.33 TCGA-C8-A8HQ-01 2 95815835 95815835 C T ZNF514 Missense_Mutation p.R132K 0.29 tolerated(0.23) benign(0.002) TCGA-C8-A8HQ-01 2 96781502 96781502 G C ADRA2B Missense_Mutation p.I129M 0.40 deleterious(0) possibly_damaging(0.535) TCGA-C8-A8HQ-01 2 96993457 96993457 C G ITPRIPL1 Nonsense_Mutation p.S371* 0.33 TCGA-C8-A8HQ-01 3 119422038 119422038 C G MAATS1 Missense_Mutation p.I31M 0.22 tolerated(0.13) benign(0.006) TCGA-C8-A8HQ-01 3 122324820 122324820 C A PARP15 Nonsense_Mutation p.S75* 0.26 TCGA-C8-A8HQ-01 3 129152019 129152019 C G MBD4 Missense_Mutation p.D495H 0.24 deleterious(0) probably_damaging(0.98) TCGA-C8-A8HQ-01 3 130871336 130871336 C A NEK11 Missense_Mutation p.S251Y 0.43 deleterious(0) probably_damaging(0.98) TCGA-C8-A8HQ-01 3 13421201 13421201 G A NUP210 Nonsense_Mutation p.Q280* 0.33 TCGA-C8-A8HQ-01 3 140406936 140406936 C T TRIM42 Missense_Mutation p.S471L 0.37 deleterious(0.01) possibly_damaging(0.476) TCGA-C8-A8HQ-01 3 148927163 148927163 C T CP Missense_Mutation p.D206N 0.26 tolerated(0.38) benign(0.027) TCGA-C8-A8HQ-01 3 170108846 170108846 C G SKIL Nonsense_Mutation p.S565* 0.30 TCGA-C8-A8HQ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.32 deleterious(0.02) probably_damaging(0.959) TCGA-C8-A8HQ-01 3 182763276 182763276 C G MCCC1 Missense_Mutation p.M336I 0.35 deleterious(0) possibly_damaging(0.834) TCGA-C8-A8HQ-01 3 184290847 184290847 G T EPHB3 Nonsense_Mutation p.E247* 0.24 TCGA-C8-A8HQ-01 3 185216757 185216757 C A TMEM41A 5'UTR 0.23 TCGA-C8-A8HQ-01 3 189705396 189705396 C A LEPREL1 Nonsense_Mutation p.E340* 0.28 TCGA-C8-A8HQ-01 3 195599155 195599155 C G TNK2 Missense_Mutation p.R544S 0.29 tolerated(0.1) benign(0.016) TCGA-C8-A8HQ-01 3 195599170 195599170 C T TNK2 Nonsense_Mutation p.W539* 0.25 TCGA-C8-A8HQ-01 3 196528851 196528851 G A PAK2 Missense_Mutation p.E81K 0.25 tolerated(0.35) possibly_damaging(0.612) TCGA-C8-A8HQ-01 3 28365073 28365073 C T CMC1 3'UTR 0.43 TCGA-C8-A8HQ-01 3 38755472 38755472 G C SCN10A Missense_Mutation p.L1261V 0.38 deleterious(0.02) probably_damaging(0.911) TCGA-C8-A8HQ-01 3 42750462 42750462 G A CCDC13 3'UTR 0.38 TCGA-C8-A8HQ-01 3 45000865 45000865 C G ZDHHC3 Missense_Mutation p.E22Q 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.833) TCGA-C8-A8HQ-01 3 47889002 47889002 G A DHX30 Missense_Mutation p.E696K 0.45 tolerated(0.85) benign(0.002) TCGA-C8-A8HQ-01 3 49705430 49705430 G A BSN 3'UTR 0.33 TCGA-C8-A8HQ-01 3 52393403 52393403 G T DNAH1 Splice_Site p.X1469_splice 0.28 TCGA-C8-A8HQ-01 3 69037464 69037464 G C EOGT Intron 0.35 TCGA-C8-A8HQ-01 4 100273896 100273896 G A ADH1C 5'UTR 0.24 TCGA-C8-A8HQ-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.06 TCGA-C8-A8HQ-01 4 13602113 13602113 C G BOD1L1 Missense_Mutation p.E2137D 0.19 benign(0.059) TCGA-C8-A8HQ-01 4 155461784 155461784 C T PLRG1 Missense_Mutation p.D301N 0.34 deleterious(0) probably_damaging(1) TCGA-C8-A8HQ-01 4 156751040 156751040 G C ASIC5 Missense_Mutation p.L496V 0.21 tolerated_low_confidence(0.38) benign(0.058) TCGA-C8-A8HQ-01 4 167655837 167655837 C T SPOCK3 3'UTR 0.38 TCGA-C8-A8HQ-01 4 183673073 183673073 G A TENM3 Silent p.L1250L 0.27 TCGA-C8-A8HQ-01 4 2306648 2306648 G A ZFYVE28 Silent p.L473L 0.34 TCGA-C8-A8HQ-01 4 37841483 37841483 C T PGM2 Missense_Mutation p.S152L 0.37 tolerated(0.72) benign(0.001) TCGA-C8-A8HQ-01 4 37841724 37841724 C G PGM2 Missense_Mutation p.H188D 0.27 deleterious(0.01) possibly_damaging(0.846) TCGA-C8-A8HQ-01 4 40122816 40122816 G C N4BP2 Missense_Mutation p.E1029Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HQ-01 4 55606120 55606120 C G KIT 3'UTR 0.26 TCGA-C8-A8HQ-01 4 57342849 57342849 G A SRP72 Missense_Mutation p.R208H 0.07 deleterious(0.03) benign(0.001) TCGA-C8-A8HQ-01 4 6293057 6293057 G A WFS1 Silent p.A198A 0.41 TCGA-C8-A8HQ-01 4 79440614 79440614 G A FRAS1 Missense_Mutation p.D3507N 0.39 benign(0.347) TCGA-C8-A8HQ-01 4 89363621 89363621 G C HERC6 3'UTR 0.27 TCGA-C8-A8HQ-01 5 1038688 1038688 C G NKD2 3'UTR 0.33 TCGA-C8-A8HQ-01 5 110074820 110074820 G A SLC25A46 5'UTR 0.28 TCGA-C8-A8HQ-01 5 113699638 113699638 C T KCNN2 Silent p.I174I 0.15 TCGA-C8-A8HQ-01 5 113699644 113699644 C T KCNN2 Silent p.L176L 0.19 TCGA-C8-A8HQ-01 5 135587488 135587488 G A TRPC7 Silent p.F476F 0.25 TCGA-C8-A8HQ-01 5 138456842 138456842 G C SIL1 Missense_Mutation p.N42K 0.37 tolerated(1) benign(0.006) TCGA-C8-A8HQ-01 5 140256833 140256833 G A PCDHA12 Silent p.A592A 0.26 TCGA-C8-A8HQ-01 5 140503242 140503242 C T PCDHB4 Silent p.N554N 0.34 TCGA-C8-A8HQ-01 5 141008753 141008753 G A HDAC3 Silent p.F199F 0.17 TCGA-C8-A8HQ-01 5 145515161 145515161 C G LARS Intron 0.27 TCGA-C8-A8HQ-01 5 148421145 148421145 G C SH3TC2 Missense_Mutation p.P189A 0.30 tolerated(0.11) benign(0.012) TCGA-C8-A8HQ-01 5 148875356 148875356 C T CSNK1A1 3'Flank 0.27 TCGA-C8-A8HQ-01 5 157161750 157161750 G A THG1L Missense_Mutation p.D179N 0.26 deleterious(0) probably_damaging(0.992) TCGA-C8-A8HQ-01 5 167182058 167182058 G A TENM2 Intron 0.27 TCGA-C8-A8HQ-01 5 170610198 170610198 G C RANBP17 Missense_Mutation p.K631N 0.37 deleterious(0) probably_damaging(0.991) TCGA-C8-A8HQ-01 5 177548346 177548346 G C N4BP3 Missense_Mutation p.R367P 0.29 deleterious(0.01) possibly_damaging(0.799) TCGA-C8-A8HQ-01 5 177550938 177550938 G A N4BP3 3'UTR 0.20 TCGA-C8-A8HQ-01 5 23526753 23526753 C T PRDM9 Missense_Mutation p.S519L 0.27 tolerated(0.17) probably_damaging(0.95) TCGA-C8-A8HQ-01 5 41312467 41312467 C T PLCXD3 3'UTR 0.36 TCGA-C8-A8HQ-01 5 68669873 68669873 G A RAD17 Missense_Mutation p.E87K 0.29 deleterious(0.02) benign(0.092) TCGA-C8-A8HQ-01 5 75919078 75919078 C G F2RL2 5'UTR 0.19 TCGA-C8-A8HQ-01 5 79351766 79351766 G C THBS4 Missense_Mutation p.D151H 0.23 tolerated(0.19) probably_damaging(0.997) TCGA-C8-A8HQ-01 5 89981690 89981690 C T GPR98 Missense_Mutation p.S2123L 0.21 probably_damaging(0.966) TCGA-C8-A8HQ-01 6 11104294 11104294 C T ERVFRD-1 Missense_Mutation p.R417H 0.26 deleterious(0) probably_damaging(0.932) TCGA-C8-A8HQ-01 6 11714569 11714569 C G ADTRP 3'Flank 0.27 TCGA-C8-A8HQ-01 6 144224208 144224208 G C ZC2HC1B Missense_Mutation p.E173Q 0.29 tolerated(0.22) benign(0.011) TCGA-C8-A8HQ-01 6 151673427 151673427 G C AKAP12 Missense_Mutation p.E1301Q 0.39 deleterious(0.03) possibly_damaging(0.558) TCGA-C8-A8HQ-01 6 151674222 151674222 G A AKAP12 Missense_Mutation p.E1566K 0.20 tolerated(0.13) benign(0.341) TCGA-C8-A8HQ-01 6 155054963 155054963 C G SCAF8 5'UTR 0.22 TCGA-C8-A8HQ-01 6 27356813 27356813 G C ZNF391 5'UTR 0.26 TCGA-C8-A8HQ-01 6 31940443 31940443 G A STK19 Missense_Mutation p.R159Q 0.24 deleterious(0.03) probably_damaging(0.97) TCGA-C8-A8HQ-01 6 38746210 38746210 C G DNAH8 Missense_Mutation p.S453C 0.29 probably_damaging(0.967) TCGA-C8-A8HQ-01 6 38883097 38883097 G A DNAH8 Missense_Mutation p.E3145K 0.17 probably_damaging(0.974) TCGA-C8-A8HQ-01 6 43589866 43589866 G A GTPBP2 Silent p.I502I 0.20 TCGA-C8-A8HQ-01 6 47846040 47846040 C T PTCHD4 Silent p.%3D 0.29 TCGA-C8-A8HQ-01 6 50786477 50786477 G A TFAP2B 5'UTR 0.25 TCGA-C8-A8HQ-01 6 52129302 52129302 G C MCM3 3'UTR 0.32 TCGA-C8-A8HQ-01 6 52868719 52868719 G A ICK 3'UTR 0.29 TCGA-C8-A8HQ-01 6 57498973 57498973 G A PRIM2 3'UTR 0.05 TCGA-C8-A8HQ-01 6 87970695 87970695 G A ZNF292 Missense_Mutation p.D2450N 0.31 tolerated(0.27) benign(0.001) TCGA-C8-A8HQ-01 6 88853655 88853655 C T CNR1 Missense_Mutation p.E447K 0.27 tolerated_low_confidence(0.75) benign(0.184) TCGA-C8-A8HQ-01 6 90453316 90453316 C T MDN1 Silent p.V1432V 0.26 TCGA-C8-A8HQ-01 7 100033019 100033019 G T PPP1R35 Missense_Mutation p.F242L 0.49 deleterious(0) probably_damaging(0.979) TCGA-C8-A8HQ-01 7 123672827 123672827 G A TMEM229A Silent p.F77F 0.59 TCGA-C8-A8HQ-01 7 128138138 128138138 G C METTL2B Silent p.G286G 0.54 TCGA-C8-A8HQ-01 7 138204025 138204025 G A TRIM24 Silent p.L241L 0.39 TCGA-C8-A8HQ-01 7 140035205 140035205 G A SLC37A3 3'UTR 0.29 TCGA-C8-A8HQ-01 7 142176408 142176408 C G TRBV7-4 Missense_Mutation p.E90Q 0.33 tolerated(0.18) benign(0.194) TCGA-C8-A8HQ-01 7 144059806 144059806 C G ARHGEF5 Missense_Mutation p.S15C 0.10 deleterious(0) benign(0.276) TCGA-C8-A8HQ-01 7 151478447 151478447 G T PRKAG2 Missense_Mutation p.S86Y 0.26 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-C8-A8HQ-01 7 1578789 1578789 G A MAFK 5'UTR 0.41 TCGA-C8-A8HQ-01 7 22985374 22985374 G A FAM126A Missense_Mutation p.S467L 0.36 tolerated(0.16) benign(0.046) TCGA-C8-A8HQ-01 7 25163443 25163443 C T CYCS Silent p.L65L 0.26 TCGA-C8-A8HQ-01 7 32591858 32591858 G A AVL9 Missense_Mutation p.M160I 0.34 deleterious(0.02) benign(0.145) TCGA-C8-A8HQ-01 7 5553321 5553321 G C FBXL18 5'UTR 0.35 TCGA-C8-A8HQ-01 7 91714940 91714940 C G AKAP9 Missense_Mutation p.I2988M 0.34 benign(0.05) TCGA-C8-A8HQ-01 7 91715563 91715563 C T AKAP9 Missense_Mutation p.H3016Y 0.29 benign(0.221) TCGA-C8-A8HQ-01 8 100050705 100050705 C T VPS13B Missense_Mutation p.H68Y 0.28 deleterious(0) possibly_damaging(0.728) TCGA-C8-A8HQ-01 8 120594704 120594704 G A ENPP2 Missense_Mutation p.S613F 0.24 tolerated(0.1) possibly_damaging(0.521) TCGA-C8-A8HQ-01 8 53024356 53024356 C T ST18 3'UTR 0.33 TCGA-C8-A8HQ-01 8 57075322 57075322 C G PLAG1 3'UTR 0.38 TCGA-C8-A8HQ-01 8 6615907 6615907 G A AGPAT5 3'UTR 0.30 TCGA-C8-A8HQ-01 8 67563703 67563703 C G VCPIP1 Missense_Mutation p.K929N 0.26 tolerated(0.1) benign(0.031) TCGA-C8-A8HQ-01 8 68992978 68992978 C T PREX2 Intron 0.18 TCGA-C8-A8HQ-01 8 77762540 77762540 G C ZFHX4 Missense_Mutation p.E1302D 0.35 benign(0.388) TCGA-C8-A8HQ-01 8 77766771 77766771 G A ZFHX4 Missense_Mutation p.M2538I 0.26 possibly_damaging(0.758) TCGA-C8-A8HQ-01 9 126776301 126776301 C G LHX2 Missense_Mutation p.S61W 0.36 tolerated(0.13) possibly_damaging(0.848) TCGA-C8-A8HQ-01 9 130269594 130269594 C T FAM129B Missense_Mutation p.E591K 0.26 tolerated(0.12) benign(0.092) TCGA-C8-A8HQ-01 9 135771092 135771092 C T TSC1 3'UTR 0.31 TCGA-C8-A8HQ-01 9 136501505 136501505 C T DBH Silent p.L4L 0.42 TCGA-C8-A8HQ-01 9 34371429 34371429 C T KIAA1161 Missense_Mutation p.V471I 0.28 deleterious(0.05) probably_damaging(0.939) TCGA-C8-A8HQ-01 9 35751637 35751637 C T RGP1 Silent p.I216I 0.38 TCGA-C8-A8HQ-01 9 5763426 5763426 C T KIAA1432 Missense_Mutation p.S800F 0.33 deleterious(0.02) benign(0.147) TCGA-C8-A8HQ-01 9 6499926 6499926 C G UHRF2 Nonsense_Mutation p.S667* 0.30 TCGA-C8-A8HQ-01 9 72365862 72365862 C T PTAR1 Missense_Mutation p.E31K 0.38 deleterious(0) probably_damaging(1) TCGA-C8-A8HQ-01 9 79824446 79824446 G A VPS13A Missense_Mutation p.D165N 0.31 tolerated(0.22) benign(0.191) TCGA-C8-A8HQ-01 9 80646077 80646077 G C GNAQ Missense_Mutation p.I25M 0.28 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HQ-01 9 86907659 86907659 C A SLC28A3 Missense_Mutation p.G316V 0.30 deleterious(0) probably_damaging(1) TCGA-C8-A8HQ-01 X 109696208 109696208 C T RGAG1 Missense_Mutation p.S788L 0.48 tolerated(0.25) benign(0.005) TCGA-C8-A8HQ-01 X 118923933 118923933 C T RPL39 Silent p.K15K 0.21 TCGA-C8-A8HQ-01 X 153295606 153295606 C T MECP2 3'Flank 0.50 TCGA-C8-A8HQ-01 X 153579328 153579328 G A FLNA Missense_Mutation p.H2369Y 0.51 tolerated(0.05) possibly_damaging(0.673) TCGA-C8-A8HQ-01 X 17743943 17743943 C T NHS Nonsense_Mutation p.Q552* 0.32 TCGA-C8-A8HQ-01 X 18258853 18258853 G A SCML2 3'UTR 0.33 TCGA-C8-A8HQ-01 X 30873143 30873143 T C TAB3 Silent p.L213L 0.40 TCGA-C8-A8HQ-01 X 47837028 47837028 G C ZNF182 Nonsense_Mutation p.S153* 0.30 TCGA-C8-A8HQ-01 X 48775887 48775887 G C PIM2 Missense_Mutation p.R33G 0.33 deleterious(0.01) benign(0.245) TCGA-C8-A8HQ-01 X 53115288 53115288 G A TSPYL2 Missense_Mutation p.E572K 0.29 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-C8-A8HQ-01 X 53431966 53431966 C T SMC1A Missense_Mutation p.R725Q 0.34 tolerated(0.12) benign(0.107) TCGA-C8-A8HQ-01 X 54223674 54223674 C T WNK3 3'UTR 0.23 TCGA-C8-A8HQ-01 X 70323171 70323171 G A FOXO4 3'UTR 0.45 TCGA-C8-A8HR-01 10 104157142 104157142 G A NFKB2 Missense_Mutation p.R160H 0.15 deleterious(0.01) benign(0.376) TCGA-C8-A8HR-01 10 121340174 121340174 A C TIAL1 Intron 0.13 TCGA-C8-A8HR-01 10 43623673 43623673 C G RET Missense_Mutation p.L1101V 0.08 tolerated_low_confidence(1) benign(0) TCGA-C8-A8HR-01 10 44052530 44052530 T C ZNF239 Missense_Mutation p.N333S 0.10 tolerated(0.12) probably_damaging(0.995) TCGA-C8-A8HR-01 10 88930267 88930267 G A FAM35A Missense_Mutation p.D556N 0.10 tolerated(0.07) probably_damaging(0.998) TCGA-C8-A8HR-01 11 108383547 108383547 T C EXPH5 Missense_Mutation p.D896G 0.06 tolerated(0.21) benign(0.008) TCGA-C8-A8HR-01 11 2993463 2993463 C A NAP1L4 Missense_Mutation p.A62S 0.09 tolerated(0.49) benign(0.015) TCGA-C8-A8HR-01 11 47602089 47602089 C G NDUFS3 Missense_Mutation p.P49R 0.14 deleterious(0.02) benign(0.002) TCGA-C8-A8HR-01 12 22678600 22678600 A G C2CD5 Missense_Mutation p.L130P 0.17 deleterious(0) possibly_damaging(0.832) TCGA-C8-A8HR-01 12 50190441 50190441 C T NCKAP5L Missense_Mutation p.G401E 0.11 tolerated_low_confidence(0.07) benign(0.052) TCGA-C8-A8HR-01 12 52841658 52841658 C T KRT6B Missense_Mutation p.R443Q 0.12 tolerated(0.06) benign(0.392) TCGA-C8-A8HR-01 12 58176534 58176534 T G TSFM 5'Flank 0.15 TCGA-C8-A8HR-01 13 88331218 88331218 T G SLITRK5 3'UTR 0.14 TCGA-C8-A8HR-01 14 106354413 106354413 T C IGHD2-21 Silent p.L8L 0.07 TCGA-C8-A8HR-01 14 75269371 75269371 A T YLPM1 Missense_Mutation p.M1505L 0.18 possibly_damaging(0.455) TCGA-C8-A8HR-01 14 75515647 75515647 A G MLH3 Missense_Mutation p.Y238H 0.10 deleterious(0.03) possibly_damaging(0.491) TCGA-C8-A8HR-01 15 41827031 41827031 A C RPAP1 Missense_Mutation p.L215R 0.12 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HR-01 15 89873431 89873431 G A POLG Missense_Mutation p.P246S 0.14 deleterious(0.03) probably_damaging(0.945) TCGA-C8-A8HR-01 16 49411693 49411693 G C C16orf78 Missense_Mutation p.E68Q 0.11 tolerated(0.44) benign(0.174) TCGA-C8-A8HR-01 16 57719805 57719805 G A GPR97 Missense_Mutation p.V503I 0.14 tolerated(0.92) benign(0.028) TCGA-C8-A8HR-01 17 32688898 32688898 T A CCL1 Nonsense_Mutation p.R32* 0.19 TCGA-C8-A8HR-01 17 32688899 32688899 G T CCL1 Silent p.S31S 0.19 TCGA-C8-A8HR-01 17 41102673 41102673 G C AARSD1 Missense_Mutation p.S392R 0.12 deleterious(0.03) benign(0.013) TCGA-C8-A8HR-01 17 57777088 57777088 T G PTRH2 5'UTR 0.24 TCGA-C8-A8HR-01 17 73824089 73824089 C T UNC13D Missense_Mutation p.R1077Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-C8-A8HR-01 19 50455605 50455605 T C SIGLEC11 Silent p.G566G 0.09 TCGA-C8-A8HR-01 1 151675132 151675132 A C CELF3 3'UTR 0.12 TCGA-C8-A8HR-01 1 155204685 155204685 C G GBA 3'UTR 0.12 TCGA-C8-A8HR-01 1 166818782 166818782 G C POGK Missense_Mutation p.R322S 0.16 deleterious(0) probably_damaging(0.977) TCGA-C8-A8HR-01 1 181058974 181058974 G A IER5 Silent p.P312P 0.11 TCGA-C8-A8HR-01 1 197407755 197407755 G A CRB1 Silent p.E1276E 0.12 TCGA-C8-A8HR-01 1 200942809 200942809 A C KIF21B 3'Flank 0.15 TCGA-C8-A8HR-01 1 55138785 55138785 G A MROH7 Missense_Mutation p.E541K 0.16 tolerated(0.07) benign(0.076) TCGA-C8-A8HR-01 20 36868987 36868987 T G KIAA1755 Missense_Mutation p.K516Q 0.05 deleterious(0) possibly_damaging(0.856) TCGA-C8-A8HR-01 21 43221481 43221481 C T PRDM15 Silent p.S1481S 0.11 TCGA-C8-A8HR-01 2 152330578 152330578 T C RIF1 Missense_Mutation p.L2399P 0.16 deleterious(0) benign(0.235) TCGA-C8-A8HR-01 2 227967506 227967506 C T COL4A4 Missense_Mutation p.R310Q 0.20 benign(0.204) TCGA-C8-A8HR-01 2 228159739 228159739 G A COL4A3 Missense_Mutation p.D1160N 0.10 unknown(0) TCGA-C8-A8HR-01 2 44513190 44513190 C G SLC3A1 Missense_Mutation p.S262C 0.13 deleterious(0) probably_damaging(0.979) TCGA-C8-A8HR-01 2 70408740 70408740 T C C2orf42 Silent p.Q126Q 0.10 TCGA-C8-A8HR-01 2 73477045 73477045 G A CCT7 Splice_Site p.X357_splice 0.10 TCGA-C8-A8HR-01 3 119595312 119595312 G C GSK3B Missense_Mutation p.P286R 0.16 deleterious(0.03) benign(0.094) TCGA-C8-A8HR-01 3 127806645 127806645 A G RUVBL1 Silent p.T341T 0.06 TCGA-C8-A8HR-01 3 158422648 158422648 C A RARRES1 Missense_Mutation p.V202L 0.28 tolerated(0.1) benign(0.205) TCGA-C8-A8HR-01 3 48614348 48614348 T C COL7A1 Missense_Mutation p.E1858G 0.10 unknown(0) TCGA-C8-A8HR-01 3 52817130 52817130 C T ITIH1 Missense_Mutation p.S363F 0.12 deleterious(0.05) benign(0.033) TCGA-C8-A8HR-01 3 52818463 52818463 C T ITIH1 Silent p.Y459Y 0.10 TCGA-C8-A8HR-01 3 78689017 78689017 C T ROBO1 Missense_Mutation p.A972T 0.21 tolerated(0.77) benign(0) TCGA-C8-A8HR-01 4 7062732 7062732 C T GRPEL1 Missense_Mutation p.D171N 0.08 tolerated(0.16) benign(0.166) TCGA-C8-A8HR-01 5 126205969 126205969 A G MARCH3 3'UTR 0.09 TCGA-C8-A8HR-01 5 132232376 132232376 G C AFF4 Nonsense_Mutation p.S649* 0.21 TCGA-C8-A8HR-01 5 53816344 53816345 - GCAGGGAAACCTACTCCTGA SNX18 3'UTR 0.23 TCGA-C8-A8HR-01 5 94890830 94890830 T C ARSK 5'UTR 0.14 TCGA-C8-A8HR-01 6 124979591 124979591 C T NKAIN2 Intron 0.09 TCGA-C8-A8HR-01 6 152712483 152712483 C T SYNE1 Missense_Mutation p.D2645N 0.10 possibly_damaging(0.821) TCGA-C8-A8HR-01 6 29976472 29976472 A T ZNRD1-AS1 Intron 0.19 TCGA-C8-A8HR-01 7 30490962 30490962 C T NOD1 Missense_Mutation p.D691N 0.30 deleterious(0) probably_damaging(0.998) TCGA-C8-A8HR-01 8 116422294 116422294 C - TRPS1 3'UTR 0.12 TCGA-C8-A8HR-01 9 6014816 6014816 T C RANBP6 Silent p.E264E 0.10 TCGA-C8-A8HR-01 X 138708815 138708815 C T MCF2 Missense_Mutation p.R240Q 0.11 tolerated(1) benign(0) TCGA-C8-A8HR-01 X 30848635 30848635 T C TAB3 3'UTR 0.15 TCGA-C8-A8HR-01 X 49079481 49079481 C G CACNA1F Missense_Mutation p.M675I 0.06 deleterious(0.02) probably_damaging(0.964) TCGA-C8-A9FZ-01 10 103899923 103899923 G T PPRC1 Missense_Mutation p.G553V 0.38 deleterious_low_confidence(0.01) benign(0.151) TCGA-C8-A9FZ-01 10 93786467 93786467 C T BTAF1 Nonsense_Mutation p.R1732* 0.09 TCGA-C8-A9FZ-01 11 17332552 17332552 C T NUCB2 Missense_Mutation p.H222Y 0.27 deleterious(0.05) probably_damaging(1) TCGA-C8-A9FZ-01 11 66742850 66742850 G T C11orf86 Missense_Mutation p.R6L 0.36 deleterious(0) possibly_damaging(0.858) TCGA-C8-A9FZ-01 12 117426539 117426539 G A FBXW8 Missense_Mutation p.M368I 0.45 deleterious(0.03) benign(0.001) TCGA-C8-A9FZ-01 12 128899674 128899674 C T TMEM132C Silent p.H161H 0.37 TCGA-C8-A9FZ-01 12 7249651 7249651 C T C1RL Missense_Mutation p.R267H 0.12 deleterious(0.04) benign(0.37) TCGA-C8-A9FZ-01 12 99222984 99222984 G A ANKS1B Missense_Mutation p.P1012S 0.46 tolerated(0.22) possibly_damaging(0.594) TCGA-C8-A9FZ-01 13 95117964 95117968 AAACA - DCT Frame_Shift_Del p.L261Rfs*12 0.27 TCGA-C8-A9FZ-01 14 38061339 38061339 G C FOXA1 Missense_Mutation p.S217C 0.36 deleterious(0) probably_damaging(1) TCGA-C8-A9FZ-01 15 20740233 20740233 C T GOLGA6L6 Missense_Mutation p.R506Q 0.25 unknown(0) TCGA-C8-A9FZ-01 16 32265157 32265157 C T TP53TG3D Intron 0.33 TCGA-C8-A9FZ-01 16 3656511 3656511 G C SLX4 Missense_Mutation p.P242A 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-C8-A9FZ-01 16 66919783 66919783 T A PDP2 3'UTR 0.10 TCGA-C8-A9FZ-01 17 46688225 46688225 G A HOXB7 Missense_Mutation p.S19L 0.37 deleterious(0.04) benign(0.08) TCGA-C8-A9FZ-01 19 48511932 48511932 G T ELSPBP1 Missense_Mutation p.R3L 0.36 tolerated_low_confidence(0.44) benign(0.048) TCGA-C8-A9FZ-01 19 6396557 6396557 C T GTF2F1 5'Flank 0.46 TCGA-C8-A9FZ-01 1 41215347 41215347 C G NFYC Missense_Mutation p.R94G 0.52 deleterious(0) probably_damaging(0.996) TCGA-C8-A9FZ-01 21 46066750 46066750 G A KRTAP10-11 Silent p.S125S 0.42 TCGA-C8-A9FZ-01 2 141108425 141108425 C T LRP1B Missense_Mutation p.G3945R 0.40 probably_damaging(0.956) TCGA-C8-A9FZ-01 2 202509851 202509851 C G MPP4 3'UTR 0.52 TCGA-C8-A9FZ-01 2 232574730 232574730 C G PTMA Intron 0.28 TCGA-C8-A9FZ-01 2 46803238 46803238 C G RHOQ Missense_Mutation p.R72G 0.34 deleterious(0.01) benign(0.007) TCGA-C8-A9FZ-01 6 110300830 110300830 A G GPR6 Missense_Mutation p.N172S 0.88 tolerated(0.12) probably_damaging(0.987) TCGA-C8-A9FZ-01 6 32939467 32939467 G T BRD2 5'UTR 0.82 TCGA-C8-A9FZ-01 7 107684216 107684216 T - LAMB4 Frame_Shift_Del p.V1485* 0.09 TCGA-C8-A9FZ-01 8 37593314 37593314 T C RP11-863K10.7 3'UTR 0.92 TCGA-C8-A9FZ-01 8 37976870 37976870 G C ASH2L Missense_Mutation p.K312N 0.04 deleterious(0.04) possibly_damaging(0.773) TCGA-C8-A9FZ-01 8 67342813 67342819 TGACGTA - RRS1 3'UTR 0.22 TCGA-C8-A9FZ-01 9 126143958 126143958 C T DENND1A Missense_Mutation p.R928H 0.39 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-C8-A9FZ-01 X 151900718 151900718 G A MAGEA12 Missense_Mutation p.A28V 0.35 tolerated(0.22) benign(0.053) TCGA-C8-A9FZ-01 X 48558640 48558640 G A SUV39H1 Silent p.R108R 0.42 TCGA-D8-A13Y-01 10 17126407 17126407 G A CUBN Missense_Mutation p.P722S 0.45 tolerated(0.06) benign(0.113) TCGA-D8-A13Y-01 10 48371106 48371106 C A ZNF488 Missense_Mutation p.L192M 0.55 deleterious(0) probably_damaging(0.994) TCGA-D8-A13Y-01 11 118963868 118963868 C T HMBS Missense_Mutation p.R321C 0.89 tolerated(0.06) benign(0.013) TCGA-D8-A13Y-01 11 124135016 124135016 C T OR8G5 Silent p.L98L 0.85 TCGA-D8-A13Y-01 11 1251029 1251053 CAGCTCCTGGTACTTATGAGCCCAC - MUC5B Splice_Site p.X406_splice 0.38 TCGA-D8-A13Y-01 11 134080196 134080196 T G NCAPD3 Silent p.R179R 0.10 TCGA-D8-A13Y-01 11 47469693 47469693 C G RAPSN Missense_Mutation p.V68L 0.48 tolerated(0.3) benign(0.063) TCGA-D8-A13Y-01 11 47753007 47753007 C T FNBP4 Missense_Mutation p.D643N 0.40 tolerated_low_confidence(0.31) benign(0.111) TCGA-D8-A13Y-01 11 55032759 55032759 G A TRIM48 Missense_Mutation p.C143Y 0.45 tolerated(0.24) benign(0.008) TCGA-D8-A13Y-01 11 55703513 55703513 A T OR5I1 Missense_Mutation p.Y122N 0.12 deleterious(0) possibly_damaging(0.577) TCGA-D8-A13Y-01 11 5701072 5701083 GACCTTCCCGTC - TRIM5 In_Frame_Del p.D109_V112del 0.71 TCGA-D8-A13Y-01 11 5701092 5701092 A G TRIM5 Missense_Mutation p.C106R 0.71 deleterious(0) probably_damaging(0.957) TCGA-D8-A13Y-01 11 5701094 5701094 A G TRIM5 Missense_Mutation p.F105S 0.71 deleterious(0) probably_damaging(1) TCGA-D8-A13Y-01 11 62595056 62595056 G A STX5 Silent p.R91R 0.40 TCGA-D8-A13Y-01 11 65374961 65374961 C T MAP3K11 Silent p.E423E 0.46 TCGA-D8-A13Y-01 12 12940449 12940449 G A APOLD1 Missense_Mutation p.E235K 0.44 tolerated(0.06) probably_damaging(0.981) TCGA-D8-A13Y-01 12 23887621 23887621 G A SOX5 Silent p.I269I 0.47 TCGA-D8-A13Y-01 12 52377869 52377869 A G ACVR1B Missense_Mutation p.T341A 0.05 deleterious(0.01) possibly_damaging(0.511) TCGA-D8-A13Y-01 12 56295483 56295483 A G WIBG 3'UTR 0.27 TCGA-D8-A13Y-01 12 56713711 56713711 C T PAN2 Silent p.L965L 0.23 TCGA-D8-A13Y-01 13 27333003 27333003 G A GPR12 Missense_Mutation p.P321L 0.77 deleterious(0.04) benign(0.407) TCGA-D8-A13Y-01 13 38229311 38229311 T A TRPC4 Missense_Mutation p.M600L 0.84 deleterious(0.05) possibly_damaging(0.839) TCGA-D8-A13Y-01 15 74914837 74914837 G A CLK3 Missense_Mutation p.E305K 0.45 tolerated(0.2) benign(0.134) TCGA-D8-A13Y-01 15 75980799 75980823 GACTGCCTCTGAGGCACGTGCTGTG - CSPG4 Frame_Shift_Del p.T862Rfs*88 0.38 TCGA-D8-A13Y-01 15 78786397 78786397 C T IREB2 Missense_Mutation p.T824M 0.47 tolerated(0.11) benign(0.012) TCGA-D8-A13Y-01 16 1271826 1271826 G C TPSG1 Missense_Mutation p.P310A 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.728) TCGA-D8-A13Y-01 16 58201137 58201137 A T CSNK2A2 Missense_Mutation p.F234I 0.09 deleterious(0) probably_damaging(0.996) TCGA-D8-A13Y-01 16 70057582 70057582 C T PDXDC2P Splice_Site 0.05 TCGA-D8-A13Y-01 16 77227443 77227443 G C MON1B Missense_Mutation p.E82Q 0.86 tolerated(0.15) benign(0.068) TCGA-D8-A13Y-01 17 10399833 10399833 G A MYH1 Missense_Mutation p.R1564C 0.84 deleterious(0) possibly_damaging(0.883) TCGA-D8-A13Y-01 17 45785815 45785815 G T TBKBP1 Nonsense_Mutation p.E310* 0.88 TCGA-D8-A13Y-01 17 4803317 4803317 G A C17orf107 Silent p.L51L 0.93 TCGA-D8-A13Y-01 17 61558968 61558968 C A ACE Missense_Mutation p.F329L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A13Y-01 17 71244434 71244434 C T C17orf80 3'UTR 0.93 TCGA-D8-A13Y-01 17 7476140 7476140 C T SENP3 3'Flank 0.90 TCGA-D8-A13Y-01 17 7578503 7578518 CAGGGCAGGTCTTGGC - TP53 Frame_Shift_Del p.A138Cfs*27 0.83 TCGA-D8-A13Y-01 18 50278518 50278518 C T DCC Silent p.S62S 0.39 TCGA-D8-A13Y-01 18 71959066 71959066 C T CYB5A Silent p.E15E 0.42 TCGA-D8-A13Y-01 19 36109508 36109508 G A HAUS5 Missense_Mutation p.R308Q 0.80 tolerated(0.26) probably_damaging(1) TCGA-D8-A13Y-01 19 38954480 38954480 G A RYR1 Missense_Mutation p.E926K 0.79 probably_damaging(0.991) TCGA-D8-A13Y-01 19 58967173 58967173 A G ZNF324B Missense_Mutation p.T288A 0.27 tolerated(1) benign(0) TCGA-D8-A13Y-01 19 9577519 9577519 G A ZNF560 Missense_Mutation p.R702C 0.77 deleterious(0.04) benign(0) TCGA-D8-A13Y-01 1 10397180 10397180 G A KIF1B Missense_Mutation p.E1014K 0.82 deleterious(0.03) probably_damaging(0.984) TCGA-D8-A13Y-01 1 149895759 149895760 - G SF3B4 Frame_Shift_Ins p.R354Pfs*132 0.38 TCGA-D8-A13Y-01 1 154185071 154185071 G A C1orf43 Missense_Mutation p.P124S 0.43 tolerated(0.19) benign(0.044) TCGA-D8-A13Y-01 1 155451186 155451186 T G ASH1L Missense_Mutation p.K492T 0.20 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-D8-A13Y-01 1 32122636 32122636 C T COL16A1 Missense_Mutation p.E1352K 0.42 unknown(0) TCGA-D8-A13Y-01 1 43852271 43852271 G C MED8 Nonsense_Mutation p.S161* 0.36 TCGA-D8-A13Y-01 1 85136470 85136470 T C SSX2IP Silent p.S24S 0.61 TCGA-D8-A13Y-01 20 62592679 62592679 G A ZNF512B Silent p.L804L 0.92 TCGA-D8-A13Y-01 20 9546864 9546864 G C PAK7 Silent p.P386P 0.43 TCGA-D8-A13Y-01 2 155711550 155711605 GACTTTCCCAAAAAACTCTTGAGGATGAGTTCTACAACTTCAGAAAAAGCCTACAG - KCNJ3 Frame_Shift_Del p.D411Lfs*25 0.73 TCGA-D8-A13Y-01 2 233244601 233244601 G T ALPP Silent p.G204G 0.20 TCGA-D8-A13Y-01 2 25037305 25037305 G A CENPO Missense_Mutation p.A93T 0.05 tolerated(0.09) benign(0.021) TCGA-D8-A13Y-01 2 44565657 44565657 C G PREPL Missense_Mutation p.D330H 0.47 tolerated(0.13) possibly_damaging(0.593) TCGA-D8-A13Y-01 2 88828895 88828901 GCTACCT - TEX37 Frame_Shift_Del p.L151Cfs*11 0.60 TCGA-D8-A13Y-01 3 120394696 120394696 A C HGD Missense_Mutation p.F10L 0.49 tolerated(0.05) benign(0.244) TCGA-D8-A13Y-01 3 12558155 12558155 G C TSEN2 Missense_Mutation p.E319Q 0.32 tolerated(0.17) benign(0.217) TCGA-D8-A13Y-01 4 1066593 1066593 A C RNF212 3'UTR 0.70 TCGA-D8-A13Y-01 4 3494593 3494593 A G DOK7 Missense_Mutation p.T294A 0.86 tolerated(0.17) benign(0.003) TCGA-D8-A13Y-01 4 69696360 69696360 T A UGT2B10 Missense_Mutation p.D450E 0.08 deleterious(0.02) possibly_damaging(0.854) TCGA-D8-A13Y-01 4 90856574 90856574 G A MMRN1 Silent p.L581L 0.73 TCGA-D8-A13Y-01 5 101631639 101631639 G A SLCO4C1 Missense_Mutation p.H110Y 0.47 tolerated(0.12) benign(0.012) TCGA-D8-A13Y-01 5 1075597 1075597 G C SLC12A7 Missense_Mutation p.S619C 0.26 deleterious(0) probably_damaging(0.994) TCGA-D8-A13Y-01 5 140176671 140176671 T A PCDHA2 Missense_Mutation p.S708T 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.487) TCGA-D8-A13Y-01 5 140176672 140176672 C A PCDHA2 Missense_Mutation p.S708Y 0.40 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D8-A13Y-01 5 140203381 140203381 C T PCDHA5 Missense_Mutation p.A674V 0.43 tolerated_low_confidence(0.12) benign(0.018) TCGA-D8-A13Y-01 5 14687728 14687728 A G FAM105B Silent p.K189K 0.33 TCGA-D8-A13Y-01 5 160047807 160047807 C T ATP10B Missense_Mutation p.V655M 0.45 tolerated(0.41) benign(0.017) TCGA-D8-A13Y-01 5 176084516 176084516 C G TSPAN17 Intron 0.41 TCGA-D8-A13Y-01 5 95226942 95226942 C G ELL2 Missense_Mutation p.Q542H 0.11 deleterious(0) possibly_damaging(0.591) TCGA-D8-A13Y-01 6 116757537 116757537 C T DSE Missense_Mutation p.P636S 0.74 tolerated(0.05) probably_damaging(0.998) TCGA-D8-A13Y-01 6 126333930 126333930 C T TRMT11 Silent p.I313I 0.23 TCGA-D8-A13Y-01 6 149944410 149944410 T C KATNA1 Silent p.P110P 0.06 TCGA-D8-A13Y-01 6 26189158 26189188 GCCAGAAATACGCTTGACGCCGCCGCGGCGA - HIST1H4D Frame_Shift_Del p.R40Sfs*10 0.69 TCGA-D8-A13Y-01 6 80746293 80746293 A G TTK Missense_Mutation p.T676A 0.42 deleterious(0) probably_damaging(0.953) TCGA-D8-A13Y-01 7 100861229 100861229 C G PLOD3 5'Flank 0.62 TCGA-D8-A13Y-01 7 103214731 103214731 C A RELN Missense_Mutation p.C1440F 0.49 tolerated(0.1) probably_damaging(0.983) TCGA-D8-A13Y-01 7 11022484 11022484 C T PHF14 Silent p.L200L 0.41 TCGA-D8-A13Y-01 7 144097327 144097327 G A NOBOX Missense_Mutation p.T308M 0.47 tolerated(0.38) benign(0.103) TCGA-D8-A13Y-01 8 104412655 104412655 C T SLC25A32 Missense_Mutation p.R311K 0.46 tolerated(0.2) benign(0.003) TCGA-D8-A13Y-01 8 133186503 133186503 A T KCNQ3 Missense_Mutation p.F343I 0.30 deleterious(0) probably_damaging(0.999) TCGA-D8-A13Y-01 8 144997236 144997236 G A PLEC Silent p.A2424A 0.28 TCGA-D8-A13Y-01 8 42207581 42207591 TGGGTAAGAAC - POLB Splice_Site p.X107_splice 0.17 TCGA-D8-A13Y-01 8 89130939 89130939 C T MMP16 Silent p.Q287Q 0.43 TCGA-D8-A13Y-01 9 116840414 116840414 G C AMBP Missense_Mutation p.P26A 0.37 tolerated(0.15) benign(0.01) TCGA-D8-A13Y-01 9 3293227 3293227 G C RFX3 Missense_Mutation p.A194G 0.89 deleterious(0.01) possibly_damaging(0.521) TCGA-D8-A13Y-01 9 79827929 79827929 G C VPS13A Missense_Mutation p.E200D 0.42 tolerated(0.46) benign(0.024) TCGA-D8-A13Y-01 X 135593486 135593486 G A HTATSF1 Missense_Mutation p.E528K 1.00 tolerated_low_confidence(0.15) benign(0.164) TCGA-D8-A13Y-01 X 47308385 47308385 G C ZNF41 Missense_Mutation p.Q262E 0.86 tolerated(0.13) benign(0.359) TCGA-D8-A13Y-01 X 91873742 91873742 G A PCDH11X Missense_Mutation p.V1283M 0.82 tolerated_low_confidence(0.16) possibly_damaging(0.629) TCGA-D8-A13Z-01 10 12211329 12211329 G C SEC61A2 3'Flank 0.08 TCGA-D8-A13Z-01 10 21177079 21177079 G C NEBL Missense_Mutation p.P106A 0.06 tolerated(0.08) probably_damaging(0.999) TCGA-D8-A13Z-01 10 27538110 27538110 G A RP11-85G18.6 Intron 0.06 TCGA-D8-A13Z-01 10 29775379 29775379 T G SVIL Missense_Mutation p.K1531N 0.23 deleterious(0.02) benign(0.298) TCGA-D8-A13Z-01 10 89717742 89717743 - G PTEN Frame_Shift_Ins p.F257Vfs*41 0.36 TCGA-D8-A13Z-01 11 126110852 126110852 T G FAM118B Missense_Mutation p.D84E 0.23 tolerated(1) benign(0.001) TCGA-D8-A13Z-01 11 126283912 126283912 G A ST3GAL4 Missense_Mutation p.M324I 0.16 tolerated(0.21) benign(0.001) TCGA-D8-A13Z-01 11 129827748 129827748 C A PRDM10 Missense_Mutation p.V43F 0.14 tolerated_low_confidence(0.05) benign(0.237) TCGA-D8-A13Z-01 11 36119907 36119907 G A LDLRAD3 Missense_Mutation p.R117H 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-D8-A13Z-01 11 4928748 4928748 A T OR51A7 Missense_Mutation p.K50M 0.29 deleterious(0) probably_damaging(0.976) TCGA-D8-A13Z-01 11 61112999 61112999 G C DAK Missense_Mutation p.W471C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D8-A13Z-01 11 64329577 64329577 G A SLC22A11 Missense_Mutation p.R200Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-D8-A13Z-01 11 7818230 7818230 G T OR5P2 Missense_Mutation p.T87K 0.10 deleterious(0.02) benign(0.112) TCGA-D8-A13Z-01 11 8016560 8016560 C T EIF3F Silent p.P259P 0.32 TCGA-D8-A13Z-01 12 112153693 112153693 C T ACAD10 Missense_Mutation p.R338C 0.23 deleterious(0.02) possibly_damaging(0.878) TCGA-D8-A13Z-01 12 117466022 117466022 G C FBXW8 3'UTR 0.09 TCGA-D8-A13Z-01 12 117725949 117725949 C A NOS1 Missense_Mutation p.V353F 0.08 tolerated(0.08) benign(0.345) TCGA-D8-A13Z-01 12 122326782 122326782 G A PSMD9 Missense_Mutation p.R7K 0.27 tolerated_low_confidence(0.94) benign(0) TCGA-D8-A13Z-01 12 132466769 132466769 G A EP400 Missense_Mutation p.G559R 0.11 unknown(0) TCGA-D8-A13Z-01 12 13716276 13716276 C T GRIN2B Missense_Mutation p.R1299H 0.41 tolerated(0.11) benign(0.039) TCGA-D8-A13Z-01 12 14804406 14804406 C A GUCY2C Missense_Mutation p.G549C 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A13Z-01 12 49418417 49418417 C A KMT2D Missense_Mutation p.M5332I 0.23 unknown(0) TCGA-D8-A13Z-01 12 53680055 53680055 C G ESPL1 Missense_Mutation p.Q1179E 0.15 tolerated(0.87) benign(0.003) TCGA-D8-A13Z-01 12 53895208 53895208 C T TARBP2 Nonsense_Mutation p.Q6* 0.17 TCGA-D8-A13Z-01 12 57569343 57569343 C G LRP1 Silent p.P1216P 0.09 TCGA-D8-A13Z-01 12 57587027 57587027 C G LRP1 Missense_Mutation p.L2542V 0.11 benign(0.174) TCGA-D8-A13Z-01 12 58347387 58347387 A C XRCC6BP1 Splice_Site p.X152_splice 0.13 TCGA-D8-A13Z-01 12 64821893 64821893 C T XPOT Missense_Mutation p.S577F 0.09 tolerated(0.07) benign(0.295) TCGA-D8-A13Z-01 12 66531907 66531907 C T TMBIM4 Missense_Mutation p.A184T 0.11 tolerated(0.07) possibly_damaging(0.57) TCGA-D8-A13Z-01 12 72338118 72338118 G C TPH2 Silent p.R100R 0.12 TCGA-D8-A13Z-01 13 40253739 40253739 C G COG6 Missense_Mutation p.T202R 0.42 deleterious(0) possibly_damaging(0.873) TCGA-D8-A13Z-01 14 21501846 21501846 C G RNASE13 3'UTR 0.07 TCGA-D8-A13Z-01 14 23857530 23857530 C T MYH6 Missense_Mutation p.R1398Q 0.09 deleterious(0.02) benign(0.187) TCGA-D8-A13Z-01 14 96129704 96129704 C G TCL6 RNA 0.21 TCGA-D8-A13Z-01 15 48780678 48780678 C T FBN1 Missense_Mutation p.C1032Y 0.18 probably_damaging(0.992) TCGA-D8-A13Z-01 16 15931822 15931822 G T MYH11 Silent p.L96L 0.30 TCGA-D8-A13Z-01 16 16219730 16219730 G A ABCC1 Missense_Mutation p.V1261M 0.40 deleterious(0) probably_damaging(0.981) TCGA-D8-A13Z-01 16 28506761 28506761 C G APOBR Missense_Mutation p.S133R 0.12 tolerated(0.17) benign(0.161) TCGA-D8-A13Z-01 16 66966114 66966114 G A FAM96B Missense_Mutation p.R162C 0.24 tolerated_low_confidence(0.1) benign(0.033) TCGA-D8-A13Z-01 16 70869618 70869618 C G HYDIN Missense_Mutation p.Q4454H 0.14 benign(0.143) TCGA-D8-A13Z-01 16 71683709 71683709 C T PHLPP2 Missense_Mutation p.S1019N 0.13 deleterious(0) probably_damaging(0.999) TCGA-D8-A13Z-01 16 71884325 71884325 C G ATXN1L Missense_Mutation p.P228A 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A13Z-01 17 27380441 27380441 G A PIPOX Missense_Mutation p.R163Q 0.15 tolerated(0.58) benign(0.018) TCGA-D8-A13Z-01 17 39780482 39780482 G A KRT17 Missense_Mutation p.R94C 0.11 deleterious(0.04) possibly_damaging(0.458) TCGA-D8-A13Z-01 17 73486391 73486391 G T KIAA0195 Missense_Mutation p.R344L 0.14 deleterious(0) possibly_damaging(0.631) TCGA-D8-A13Z-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.37 deleterious(0) probably_damaging(1) TCGA-D8-A13Z-01 18 10699015 10699015 G T PIEZO2 Missense_Mutation p.P2088Q 0.14 deleterious(0.01) probably_damaging(0.923) TCGA-D8-A13Z-01 18 54444068 54444068 T C WDR7 Silent p.P968P 0.04 TCGA-D8-A13Z-01 19 14523994 14523994 G T DDX39A Nonsense_Mutation p.Y13* 0.12 TCGA-D8-A13Z-01 19 18675719 18675719 T G KXD1 Missense_Mutation p.F48V 0.09 tolerated(0.49) probably_damaging(0.992) TCGA-D8-A13Z-01 19 40328396 40328396 C A FBL Missense_Mutation p.V213L 0.05 deleterious(0) benign(0.146) TCGA-D8-A13Z-01 19 42729694 42729694 G A ZNF526 Missense_Mutation p.R380Q 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A13Z-01 19 4508835 4508835 T A PLIN4 Missense_Mutation p.H1202L 0.60 deleterious(0) probably_damaging(0.944) TCGA-D8-A13Z-01 19 45575069 45575069 G C ZNF296 Silent p.R406R 0.10 TCGA-D8-A13Z-01 19 50245191 50245191 C T TSKS Missense_Mutation p.G483D 0.63 tolerated(0.2) possibly_damaging(0.86) TCGA-D8-A13Z-01 19 5456398 5456398 T A ZNRF4 Missense_Mutation p.V299D 0.19 deleterious(0) probably_damaging(0.931) TCGA-D8-A13Z-01 19 54866978 54866978 C T LAIR1 Missense_Mutation p.D255N 0.11 tolerated(0.08) probably_damaging(0.956) TCGA-D8-A13Z-01 19 55447631 55447631 C G NLRP7 Silent p.L766L 0.16 TCGA-D8-A13Z-01 19 58199532 58199532 T G ZNF551 Missense_Mutation p.L630R 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A13Z-01 19 7267521 7267521 T C INSR Missense_Mutation p.I163V 0.11 tolerated(0.06) benign(0.077) TCGA-D8-A13Z-01 1 155160204 155160204 C A MUC1 Missense_Mutation p.V359F 0.24 tolerated(0.09) possibly_damaging(0.77) TCGA-D8-A13Z-01 1 211486249 211486249 G C RCOR3 Missense_Mutation p.E421D 0.09 tolerated(0.39) benign(0.002) TCGA-D8-A13Z-01 1 216896587 216896587 C G ESRRG Intron 0.19 TCGA-D8-A13Z-01 1 229623262 229623262 T A NUP133 Silent p.G431G 0.05 TCGA-D8-A13Z-01 1 23419915 23419915 G C LUZP1 Missense_Mutation p.N280K 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-D8-A13Z-01 1 39311661 39311661 T C RRAGC Missense_Mutation p.K333R 0.10 tolerated(0.71) benign(0.005) TCGA-D8-A13Z-01 1 43892390 43892390 C T SZT2 Silent p.A1016A 0.11 TCGA-D8-A13Z-01 1 44442914 44442914 T A ATP6V0B Intron 0.44 TCGA-D8-A13Z-01 1 52940986 52940986 G C ZCCHC11 Missense_Mutation p.L749V 0.11 tolerated(0.3) benign(0.138) TCGA-D8-A13Z-01 1 52991318 52991318 G A ZCCHC11 Missense_Mutation p.S212F 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.694) TCGA-D8-A13Z-01 1 64624796 64624796 C T ROR1 Missense_Mutation p.S436L 0.13 tolerated(0.08) benign(0.154) TCGA-D8-A13Z-01 21 46911228 46911228 C T COL18A1 Silent p.D899D 0.25 TCGA-D8-A13Z-01 2 114340535 114340535 A G FAM138B 3'Flank 0.03 TCGA-D8-A13Z-01 2 17697877 17697877 T C RAD51AP2 Silent p.E602E 0.09 TCGA-D8-A13Z-01 2 186671458 186671459 - AAGATA FSIP2 In_Frame_Ins p.D5899_R5900insKD 0.34 TCGA-D8-A13Z-01 2 238484088 238484088 C T RAB17 Silent p.L157L 0.12 TCGA-D8-A13Z-01 2 27801199 27801201 TTG - C2orf16 In_Frame_Del p.V588del 0.13 TCGA-D8-A13Z-01 2 99936153 99936153 C G TXNDC9 Missense_Mutation p.D225H 0.08 deleterious(0) possibly_damaging(0.879) TCGA-D8-A13Z-01 3 107778350 107778350 C G CD47 Missense_Mutation p.V214L 0.07 deleterious(0) probably_damaging(0.992) TCGA-D8-A13Z-01 3 112080423 112080423 G C CD200 3'UTR 0.20 TCGA-D8-A13Z-01 3 185191457 185191457 G T MAP3K13 Nonsense_Mutation p.E780* 0.22 TCGA-D8-A13Z-01 3 46026346 46026347 - CC FYCO1 Splice_Site p.X19_splice 0.15 TCGA-D8-A13Z-01 3 49662490 49662490 A T BSN Missense_Mutation p.T103S 0.14 unknown(0) TCGA-D8-A13Z-01 3 57130377 57130377 G T IL17RD 3'UTR 0.14 TCGA-D8-A13Z-01 4 110221778 110221778 T G COL25A1 Missense_Mutation p.I110L 0.13 tolerated(0.45) unknown(0) TCGA-D8-A13Z-01 5 1239601 1239601 G A SLC6A18 Missense_Mutation p.A257T 0.16 deleterious(0) probably_damaging(1) TCGA-D8-A13Z-01 5 140559307 140559307 C T PCDHB8 Silent p.Y564Y 0.12 TCGA-D8-A13Z-01 5 161580475 161580475 A G GABRG2 3'UTR 0.08 TCGA-D8-A13Z-01 5 167674943 167674943 C A TENM2 Silent p.T2333T 0.30 TCGA-D8-A13Z-01 5 32356003 32356003 G C ZFR Missense_Mutation p.L1030V 0.13 deleterious(0) unknown(0) TCGA-D8-A13Z-01 5 38918971 38918971 G C OSMR Missense_Mutation p.K464N 0.15 deleterious(0.04) probably_damaging(0.92) TCGA-D8-A13Z-01 5 39021230 39021230 C T RICTOR Missense_Mutation p.D36N 0.13 deleterious(0.01) benign(0.382) TCGA-D8-A13Z-01 6 116442650 116442650 G T COL10A1 Missense_Mutation p.P210H 0.11 deleterious(0) unknown(0) TCGA-D8-A13Z-01 6 124979382 124979382 G T NKAIN2 Missense_Mutation p.W108C 0.17 deleterious(0) probably_damaging(0.964) TCGA-D8-A13Z-01 6 129807718 129807718 C A LAMA2 Missense_Mutation p.L2617M 0.11 tolerated(0.06) possibly_damaging(0.617) TCGA-D8-A13Z-01 6 151766784 151766784 G C RMND1 Missense_Mutation p.P55A 0.09 tolerated_low_confidence(0.22) benign(0.006) TCGA-D8-A13Z-01 6 34256584 34256584 G A NUDT3 Silent p.V155V 0.10 TCGA-D8-A13Z-01 6 56358840 56358840 C G DST Missense_Mutation p.E4165Q 0.09 probably_damaging(0.94) TCGA-D8-A13Z-01 6 71200781 71200781 G C FAM135A Missense_Mutation p.V290L 0.08 tolerated(0.58) benign(0.012) TCGA-D8-A13Z-01 6 76380373 76380373 C A SENP6 Silent p.V443V 0.11 TCGA-D8-A13Z-01 6 88218170 88218170 G C SLC35A1 Missense_Mutation p.D203H 0.20 deleterious(0.01) benign(0.199) TCGA-D8-A13Z-01 6 90380733 90380733 C T MDN1 Missense_Mutation p.V4621I 0.08 benign(0.009) TCGA-D8-A13Z-01 7 19184661 19184661 G A FERD3L Missense_Mutation p.R109C 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A13Z-01 8 133849997 133849997 G A PHF20L1 Missense_Mutation p.G711E 0.24 deleterious(0) probably_damaging(0.982) TCGA-D8-A13Z-01 9 140114747 140114747 C T RNF208 3'UTR 0.43 TCGA-D8-A13Z-01 9 37537382 37537382 G A FBXO10 Missense_Mutation p.R382C 0.13 tolerated(0.2) possibly_damaging(0.543) TCGA-D8-A13Z-01 X 71870294 71870294 C T PHKA1 Missense_Mutation p.D424N 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A140-01 10 122278379 122278379 C A PPAPDC1A Nonsense_Mutation p.C97* 0.39 TCGA-D8-A140-01 10 135020748 135020748 C T KNDC1 Silent p.S1229S 0.33 TCGA-D8-A140-01 10 22016847 22016847 C T MLLT10 Missense_Mutation p.L685F 0.13 deleterious(0.04) benign(0.424) TCGA-D8-A140-01 10 61819102 61819102 C T ANK3 Missense_Mutation p.D4228N 0.24 benign(0.339) TCGA-D8-A140-01 10 70892783 70892783 G A VPS26A Missense_Mutation p.G45R 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-D8-A140-01 10 8111513 8111514 - G GATA3 Frame_Shift_Ins p.D336Gfs*17 0.26 TCGA-D8-A140-01 11 12901217 12901217 G A TEAD1 Intron 0.17 TCGA-D8-A140-01 11 55064990 55064990 G T TRIM51HP RNA 0.17 TCGA-D8-A140-01 11 55735062 55735062 C T OR10AG1 Missense_Mutation p.R293K 0.15 tolerated(0.45) benign(0.021) TCGA-D8-A140-01 11 55798416 55798416 C T OR5AS1 Silent p.V174V 0.26 TCGA-D8-A140-01 11 55861296 55861296 C T OR8I2 Silent p.S171S 0.09 TCGA-D8-A140-01 11 62996956 62996956 C A SLC22A25 Missense_Mutation p.D57Y 0.38 deleterious(0) possibly_damaging(0.691) TCGA-D8-A140-01 11 82708280 82708280 G C RAB30 Missense_Mutation p.R27G 0.52 tolerated(0.07) probably_damaging(1) TCGA-D8-A140-01 12 120899883 120899883 C T SRSF9 Missense_Mutation p.R202H 0.27 tolerated(0.08) possibly_damaging(0.551) TCGA-D8-A140-01 12 131359172 131359172 G - RAN Frame_Shift_Del p.R110Qfs*22 0.19 TCGA-D8-A140-01 12 32908185 32908185 G A YARS2 Silent p.L208L 0.34 TCGA-D8-A140-01 12 53167402 53167402 G A KRT76 Silent p.R280R 0.33 TCGA-D8-A140-01 12 53344579 53344579 C A KRT18 Silent p.I182I 0.33 TCGA-D8-A140-01 12 54943667 54943667 C T PDE1B Missense_Mutation p.S4F 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.485) TCGA-D8-A140-01 12 69082816 69082816 C G NUP107 Missense_Mutation p.A28G 0.12 tolerated_low_confidence(0.08) benign(0.156) TCGA-D8-A140-01 12 6936007 6936007 G A GPR162 Missense_Mutation p.E469K 0.27 tolerated_low_confidence(0.36) possibly_damaging(0.636) TCGA-D8-A140-01 13 101278346 101278346 C T TMTC4 Missense_Mutation p.R522K 0.33 tolerated(1) benign(0.001) TCGA-D8-A140-01 13 106142353 106142353 A G DAOA Missense_Mutation p.M129V 0.29 deleterious_low_confidence(0) benign(0.043) TCGA-D8-A140-01 13 27830356 27830356 T G RPL21 Missense_Mutation p.I93S 0.07 deleterious(0.02) benign(0.101) TCGA-D8-A140-01 13 39611429 39611429 G A PROSER1 5'UTR 0.09 TCGA-D8-A140-01 13 49720065 49720065 T C FNDC3A Missense_Mutation p.V324A 0.10 tolerated(0.21) benign(0.021) TCGA-D8-A140-01 13 96086159 96086159 G A CLDN10 Silent p.T24T 0.20 TCGA-D8-A140-01 14 34269516 34269516 C T NPAS3 Missense_Mutation p.P668L 0.40 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-D8-A140-01 14 64694463 64694463 C T SYNE2 3'Flank 0.35 TCGA-D8-A140-01 14 65208367 65208367 C T PLEKHG3 Missense_Mutation p.T655I 0.50 deleterious(0.01) possibly_damaging(0.667) TCGA-D8-A140-01 14 90650490 90650490 A T KCNK13 Nonsense_Mutation p.K124* 0.26 TCGA-D8-A140-01 15 34530451 34530451 G C SLC12A6 Missense_Mutation p.F928L 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-D8-A140-01 15 40627656 40627657 - A C15orf52 Frame_Shift_Ins p.C437Vfs*21 0.33 TCGA-D8-A140-01 15 42984495 42984495 G A STARD9 Silent p.T3573T 0.38 TCGA-D8-A140-01 15 69072415 69072415 T C ANP32A 3'UTR 0.33 TCGA-D8-A140-01 15 77474189 77474189 T C PEAK1 Missense_Mutation p.H27R 0.34 deleterious(0) probably_damaging(0.998) TCGA-D8-A140-01 15 89449997 89449997 G A MFGE8 Missense_Mutation p.R134W 0.42 deleterious(0) probably_damaging(0.999) TCGA-D8-A140-01 15 90328653 90328653 G A ANPEP Missense_Mutation p.T944M 0.27 deleterious(0) probably_damaging(0.99) TCGA-D8-A140-01 16 3366955 3366955 G T ZNF75A Missense_Mutation p.E48D 0.28 deleterious(0.05) probably_damaging(0.978) TCGA-D8-A140-01 16 9934570 9934570 C A GRIN2A Missense_Mutation p.V529L 0.28 deleterious(0) probably_damaging(0.98) TCGA-D8-A140-01 17 17163754 17163754 A G COPS3 Missense_Mutation p.V266A 0.36 tolerated(1) benign(0.001) TCGA-D8-A140-01 17 18088015 18088015 A G ALKBH5 Missense_Mutation p.E153G 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A140-01 17 19685246 19685246 C T ULK2 Silent p.E865E 0.25 TCGA-D8-A140-01 17 37371076 37371076 G T STAC2 Missense_Mutation p.P271T 0.16 tolerated(0.59) benign(0) TCGA-D8-A140-01 17 38721675 38721675 C T CCR7 5'UTR 0.16 TCGA-D8-A140-01 17 40091945 40091945 C A TTC25 RNA 0.27 TCGA-D8-A140-01 17 56679913 56679913 T A TEX14 Nonsense_Mutation p.K465* 0.12 TCGA-D8-A140-01 17 62026030 62026030 C T SCN4A Missense_Mutation p.E1029K 0.07 tolerated(0.2) probably_damaging(1) TCGA-D8-A140-01 17 77086788 77086788 C T RBFOX3 3'UTR 0.38 TCGA-D8-A140-01 17 78162222 78162222 C G CARD14 Missense_Mutation p.S241C 0.07 tolerated(0.05) benign(0.01) TCGA-D8-A140-01 18 59157775 59157775 C A CDH20 5'UTR 0.16 TCGA-D8-A140-01 19 11113752 11113752 C T SMARCA4 Silent p.I620I 0.38 TCGA-D8-A140-01 19 13248140 13248140 C T NACC1 Silent p.G392G 0.22 TCGA-D8-A140-01 19 1490227 1490227 A T PCSK4 Missense_Mutation p.V40D 0.38 deleterious(0) probably_damaging(0.99) TCGA-D8-A140-01 19 14938377 14938377 T A OR7A5 Missense_Mutation p.H226L 0.07 tolerated_low_confidence(0.74) benign(0.003) TCGA-D8-A140-01 19 18675692 18675692 G C KXD1 Missense_Mutation p.E39Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-D8-A140-01 19 19313025 19313025 G A NR2C2AP Intron 0.26 TCGA-D8-A140-01 19 19452082 19452082 C T MAU2 Silent p.L201L 0.08 TCGA-D8-A140-01 19 3834981 3834981 G A ZFR2 Silent p.S18S 0.57 TCGA-D8-A140-01 19 38993592 38993592 C T RYR1 Silent p.F2636F 0.38 TCGA-D8-A140-01 19 50367627 50367628 - GATGAGCGTCCCGTCCA PNKP Frame_Shift_Ins p.T178Wfs*43 0.08 TCGA-D8-A140-01 19 51647840 51647840 T G SIGLEC7 Missense_Mutation p.L204R 0.35 deleterious(0) probably_damaging(0.991) TCGA-D8-A140-01 19 53645625 53645625 G T ZNF347 Nonsense_Mutation p.Y153* 0.36 TCGA-D8-A140-01 19 9008186 9008186 A G MUC16 Silent p.S13122S 0.09 TCGA-D8-A140-01 19 9057709 9057709 C T MUC16 Missense_Mutation p.E9913K 0.08 unknown(0) TCGA-D8-A140-01 1 12887609 12887609 C T PRAMEF11 Missense_Mutation p.G83E 0.32 tolerated(1) benign(0.011) TCGA-D8-A140-01 1 149857765 149857765 G A HIST2H2BE 3'UTR 0.12 TCGA-D8-A140-01 1 149903314 149903314 G A MTMR11 Silent p.R376R 0.11 TCGA-D8-A140-01 1 150204143 150204143 C T ANP32E Missense_Mutation p.R59Q 0.13 tolerated(0.2) benign(0.015) TCGA-D8-A140-01 1 151377116 151377116 A C POGZ 3'UTR 0.13 TCGA-D8-A140-01 1 154986996 154986996 G T ZBTB7B Intron 0.25 TCGA-D8-A140-01 1 157805906 157805906 C T CD5L Missense_Mutation p.R32H 0.16 tolerated(0.1) benign(0.14) TCGA-D8-A140-01 1 166974325 166974325 A G MAEL Missense_Mutation p.T221A 0.18 tolerated(0.5) benign(0.001) TCGA-D8-A140-01 1 171254572 171254572 C G FMO1 Missense_Mutation p.F496L 0.09 tolerated(1) benign(0.003) TCGA-D8-A140-01 1 172558889 172558889 C T SUCO Missense_Mutation p.T883I 0.08 deleterious(0) possibly_damaging(0.852) TCGA-D8-A140-01 1 19653907 19653907 G A PQLC2 Splice_Site p.X268_splice 0.47 TCGA-D8-A140-01 1 200378223 200378223 T A ZNF281 Missense_Mutation p.D204V 0.23 tolerated(0.19) benign(0.035) TCGA-D8-A140-01 1 205897095 205897095 C T SLC26A9 Missense_Mutation p.V346I 0.15 deleterious(0) benign(0.31) TCGA-D8-A140-01 1 228521466 228521466 C T OBSCN Missense_Mutation p.R6304W 0.27 probably_damaging(0.976) TCGA-D8-A140-01 1 228537694 228537695 - T OBSCN Frame_Shift_Ins p.Y7042Lfs*75 0.16 TCGA-D8-A140-01 1 238051691 238051691 C A ZP4 Nonsense_Mutation p.E174* 0.21 TCGA-D8-A140-01 1 38344092 38344092 C A INPP5B Intron 0.26 TCGA-D8-A140-01 1 54513099 54513099 C T TMEM59 Intron 0.24 TCGA-D8-A140-01 1 57185187 57185187 T C C1orf168 3'UTR 0.36 TCGA-D8-A140-01 1 87380793 87380793 T G HS2ST1 Missense_Mutation p.L25R 0.30 tolerated(0.06) benign(0.191) TCGA-D8-A140-01 1 89414876 89414876 C G CCBL2 Missense_Mutation p.E347Q 0.05 tolerated(1) probably_damaging(0.961) TCGA-D8-A140-01 20 13839995 13839996 GT - SEL1L2 Intron 0.10 TCGA-D8-A140-01 20 46281213 46281213 C T NCOA3 Missense_Mutation p.S1337L 0.24 deleterious(0.02) benign(0.212) TCGA-D8-A140-01 21 33641325 33641325 G A MIS18A 3'UTR 0.11 TCGA-D8-A140-01 21 46596033 46596033 G A ADARB1 Silent p.L139L 0.47 TCGA-D8-A140-01 22 18769201 18769201 G A GGT3P RNA 0.17 TCGA-D8-A140-01 2 113404906 113404906 G T SLC20A1 Missense_Mutation p.A114S 0.34 tolerated(0.12) benign(0.344) TCGA-D8-A140-01 2 166930005 166930005 C T SCN1A Missense_Mutation p.D43N 0.20 tolerated(0.13) benign(0.004) TCGA-D8-A140-01 2 166930133 166930133 T C SCN1A 5'Flank 0.21 TCGA-D8-A140-01 2 239140479 239140479 C T AC016757.3 5'Flank 0.45 TCGA-D8-A140-01 2 32750680 32750680 C T BIRC6 Missense_Mutation p.H3969Y 0.09 probably_damaging(0.979) TCGA-D8-A140-01 2 69870081 69870081 C T AAK1 Missense_Mutation p.G31D 0.33 deleterious(0) unknown(0) TCGA-D8-A140-01 2 85843336 85843336 G A USP39 Silent p.K6K 0.33 TCGA-D8-A140-01 3 10354321 10354321 C T SEC13 Nonsense_Mutation p.W86* 0.28 TCGA-D8-A140-01 3 127788327 127788327 C T SEC61A1 Missense_Mutation p.P418L 0.71 deleterious(0.01) possibly_damaging(0.901) TCGA-D8-A140-01 3 133673994 133673994 C T SLCO2A1 Nonsense_Mutation p.W147* 0.07 TCGA-D8-A140-01 3 197273351 197273351 G T BDH1 5'UTR 0.34 TCGA-D8-A140-01 3 4699856 4699856 G T ITPR1 Nonsense_Mutation p.E334* 0.29 TCGA-D8-A140-01 3 49751562 49751562 C T RNF123 Silent p.L989L 0.44 TCGA-D8-A140-01 3 69244205 69244205 T G FRMD4B Missense_Mutation p.K486Q 0.34 deleterious(0.02) possibly_damaging(0.661) TCGA-D8-A140-01 4 10491965 10491965 G A CLNK 3'UTR 0.37 TCGA-D8-A140-01 4 185940105 185940105 G T HELT Missense_Mutation p.R8L 0.28 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-D8-A140-01 4 68370935 68370935 G A CENPC Missense_Mutation p.H707Y 0.06 tolerated(0.05) benign(0.011) TCGA-D8-A140-01 4 80327945 80327945 G A GK2 Silent p.S470S 0.28 TCGA-D8-A140-01 5 109091068 109091068 G T MAN2A1 Missense_Mutation p.G249V 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A140-01 5 178410025 178410025 G A GRM6 Silent p.G774G 0.45 TCGA-D8-A140-01 5 36984849 36984849 C A NIPBL Missense_Mutation p.P523T 0.08 tolerated_low_confidence(1) benign(0.034) TCGA-D8-A140-01 5 72330517 72330517 G T FCHO2 Missense_Mutation p.S277I 0.25 tolerated(0.47) benign(0.004) TCGA-D8-A140-01 5 73178396 73178396 A G ARHGEF28 Missense_Mutation p.K972E 0.30 deleterious(0) probably_damaging(0.998) TCGA-D8-A140-01 6 142711398 142711398 G A GPR126 Missense_Mutation p.G409E 0.45 tolerated(0.08) possibly_damaging(0.897) TCGA-D8-A140-01 6 153019117 153019117 T - MYCT1 Frame_Shift_Del p.F29Sfs*28 0.30 TCGA-D8-A140-01 6 155561720 155561720 C T TIAM2 Silent p.G1075G 0.36 TCGA-D8-A140-01 6 34004103 34004103 G A GRM4 Missense_Mutation p.A595V 0.36 deleterious(0) possibly_damaging(0.627) TCGA-D8-A140-01 6 44224176 44224176 G T SLC35B2 Missense_Mutation p.A88D 0.42 tolerated(0.47) benign(0.004) TCGA-D8-A140-01 7 130357595 130357595 G A TSGA13 Missense_Mutation p.S170F 0.10 tolerated(0.13) possibly_damaging(0.683) TCGA-D8-A140-01 7 70255691 70255691 G A AUTS2 Silent p.E1163E 0.40 TCGA-D8-A140-01 7 77789453 77789453 C T MAGI2 Missense_Mutation p.A912T 0.30 tolerated(0.36) benign(0.001) TCGA-D8-A140-01 7 99773285 99773286 - G GPC2 Frame_Shift_Ins p.D187* 0.28 TCGA-D8-A140-01 8 103841546 103841546 C T AZIN1 Missense_Mutation p.D397N 0.23 tolerated(0.05) probably_damaging(0.96) TCGA-D8-A140-01 8 11418950 11418950 C T BLK Missense_Mutation p.T390M 0.45 deleterious(0.04) benign(0.028) TCGA-D8-A140-01 8 55537248 55537248 C T RP1 Missense_Mutation p.S269L 0.21 deleterious(0.04) benign(0.03) TCGA-D8-A140-01 9 115964882 115964882 A G FKBP15 Missense_Mutation p.Y143H 0.33 deleterious(0.01) benign(0.093) TCGA-D8-A140-01 9 117844172 117844172 C T TNC Silent p.L761L 0.10 TCGA-D8-A140-01 9 125621114 125621114 T C RC3H2 Missense_Mutation p.Y706C 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-D8-A140-01 9 126125420 126125420 G A CRB2 Missense_Mutation p.R124H 0.38 tolerated(0.56) unknown(0) TCGA-D8-A140-01 9 140142146 140142147 - G FAM166A Frame_Shift_Ins p.D8Rfs*59 0.26 TCGA-D8-A140-01 9 27566832 27566832 G A C9orf72 Missense_Mutation p.S96L 0.09 deleterious(0) probably_damaging(0.996) TCGA-D8-A140-01 9 95475767 95475767 G A BICD2 3'UTR 0.27 TCGA-D8-A140-01 9 99404040 99404040 G T AAED1 3'UTR 0.09 TCGA-D8-A140-01 X 105855830 105855830 C T CXorf57 Nonsense_Mutation p.Q174* 0.31 TCGA-D8-A140-01 X 107978764 107978764 C T IRS4 Missense_Mutation p.E271K 0.35 deleterious(0.02) probably_damaging(0.983) TCGA-D8-A140-01 X 11777758 11777758 A - MSL3 Intron 0.25 TCGA-D8-A140-01 X 48831588 48831588 G A GRIPAP1 Silent p.T804T 0.19 TCGA-D8-A140-01 X 51076061 51076061 G A NUDT10 Missense_Mutation p.V82I 0.36 tolerated(0.66) benign(0.002) TCGA-D8-A140-01 X 54978380 54978380 G A PFKFB1 Silent p.G268G 0.31 TCGA-D8-A140-01 X 57934473 57934473 G A ZXDA Silent p.G794G 0.10 TCGA-D8-A140-01 X 69717042 69717042 C A DLG3 Intron 0.37 TCGA-D8-A140-01 X 71823050 71823050 G A PHKA1 Silent p.L946L 0.31 TCGA-D8-A140-01 X 73964215 73964215 C T KIAA2022 Missense_Mutation p.M59I 0.28 tolerated_low_confidence(0.24) benign(0.002) TCGA-D8-A141-01 10 25313006 25313006 G T THNSL1 Missense_Mutation p.G285V 0.15 tolerated(0.21) possibly_damaging(0.602) TCGA-D8-A141-01 11 63403722 63403722 T C ATL3 Missense_Mutation p.N312S 0.11 tolerated(0.29) possibly_damaging(0.791) TCGA-D8-A141-01 12 72956762 72956762 C G TRHDE Missense_Mutation p.Q617E 0.21 tolerated(1) benign(0) TCGA-D8-A141-01 13 52726763 52726763 T - NEK3 Frame_Shift_Del p.H125Pfs*17 0.24 TCGA-D8-A141-01 13 72134083 72134083 C T DACH1 Missense_Mutation p.R437H 0.08 probably_damaging(0.988) TCGA-D8-A141-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.35 deleterious(0) probably_damaging(0.999) TCGA-D8-A141-01 17 15943759 15943760 - T NCOR1 Frame_Shift_Ins p.S2244Vfs*5 0.10 TCGA-D8-A141-01 17 26732105 26732105 G A SLC46A1 Missense_Mutation p.R204W 0.24 deleterious(0) probably_damaging(0.912) TCGA-D8-A141-01 17 4837701 4837701 C G GP1BA Missense_Mutation p.S601W 0.17 deleterious(0) unknown(0) TCGA-D8-A141-01 19 7682810 7682810 C T CAMSAP3 Missense_Mutation p.S1233L 0.09 deleterious(0) probably_damaging(0.959) TCGA-D8-A141-01 1 215408369 215408369 C T KCNK2 Missense_Mutation p.H388Y 0.11 tolerated_low_confidence(0.28) possibly_damaging(0.775) TCGA-D8-A141-01 1 222695924 222695924 G A HHIPL2 3'UTR 0.24 TCGA-D8-A141-01 1 228582831 228582831 C T TRIM11 Missense_Mutation p.G328S 0.22 tolerated(0.69) probably_damaging(0.98) TCGA-D8-A141-01 21 36252853 36252853 C G RUNX1 Splice_Site p.X170_splice 0.13 TCGA-D8-A141-01 2 88885398 88885398 C A EIF2AK3 Silent p.T537T 0.14 TCGA-D8-A141-01 6 26217367 26217367 G A HIST1H2AE Silent p.V55V 0.16 TCGA-D8-A141-01 6 42227276 42227276 C T TRERF1 Silent p.P690P 0.15 TCGA-D8-A141-01 7 51095504 51095504 G T COBL Missense_Mutation p.P1097T 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A141-01 8 145006858 145006858 C T PLEC Missense_Mutation p.R724Q 0.10 unknown(0) TCGA-D8-A141-01 8 145739483 145739483 C T RECQL4 Silent p.R629R 0.20 TCGA-D8-A141-01 X 12937272 12937272 A G TLR8 Missense_Mutation p.E38G 0.10 deleterious(0) benign(0.391) TCGA-D8-A141-01 X 48978773 48978773 G T GPKOW Missense_Mutation p.A144E 0.25 tolerated(0.96) benign(0.02) TCGA-D8-A141-01 X 70461089 70461089 T C ZMYM3 Missense_Mutation p.Y1303C 0.15 deleterious(0) possibly_damaging(0.812) TCGA-D8-A142-01 10 118401627 118401627 G A PNLIPRP2 Missense_Mutation p.G393R 0.10 deleterious(0.03) probably_damaging(0.949) TCGA-D8-A142-01 10 5567139 5567139 C T CALML3 Missense_Mutation p.R31C 0.07 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-D8-A142-01 10 97602252 97602252 G A ENTPD1 Splice_Site p.X150_splice 0.35 TCGA-D8-A142-01 11 124749095 124749095 C G ROBO3 Silent p.P1181P 0.08 TCGA-D8-A142-01 11 56380493 56380493 T C OR5M1 Silent p.L162L 0.09 TCGA-D8-A142-01 11 60470916 60470916 A G MS4A8 Silent p.V95V 0.03 TCGA-D8-A142-01 11 92616311 92616311 T G FAT3 Missense_Mutation p.V4230G 0.11 possibly_damaging(0.821) TCGA-D8-A142-01 12 100660730 100660730 C G DEPDC4 Missense_Mutation p.R42P 0.23 tolerated(0.54) benign(0) TCGA-D8-A142-01 12 106633627 106633627 C A CKAP4 Silent p.L328L 0.15 TCGA-D8-A142-01 12 112676882 112676882 C T HECTD4 Missense_Mutation p.R1609H 0.06 possibly_damaging(0.603) TCGA-D8-A142-01 12 121838009 121838009 C G RNF34 5'UTR 0.15 TCGA-D8-A142-01 12 124241429 124241429 C T ATP6V0A2 Silent p.V787V 0.40 TCGA-D8-A142-01 12 130927135 130927135 C T RIMBP2 Silent p.S237S 0.09 TCGA-D8-A142-01 12 18891214 18891214 C G CAPZA3 Missense_Mutation p.S4R 0.10 tolerated_low_confidence(0.05) benign(0.044) TCGA-D8-A142-01 12 56844950 56844950 A T MIP 3'UTR 0.19 TCGA-D8-A142-01 12 57603538 57603538 A G LRP1 Missense_Mutation p.N4109S 0.08 probably_damaging(0.993) TCGA-D8-A142-01 12 675138 675138 G A NINJ2 Silent p.I126I 0.13 TCGA-D8-A142-01 12 91449597 91449597 C T KERA Silent p.V154V 0.25 TCGA-D8-A142-01 12 9346815 9346815 T G PZP Missense_Mutation p.K371T 0.04 tolerated(0.19) probably_damaging(0.966) TCGA-D8-A142-01 13 29598871 29598871 C A MTUS2 Nonsense_Mutation p.Y22* 0.08 TCGA-D8-A142-01 13 66878982 66878982 A - PCDH9 Frame_Shift_Del p.V1174* 0.11 TCGA-D8-A142-01 13 92380829 92380830 GC A GPC5 Frame_Shift_Del p.S355Nfs*15 0.12 TCGA-D8-A142-01 14 100576047 100576047 A G EVL Intron 0.41 TCGA-D8-A142-01 14 105417688 105417688 A G AHNAK2 Missense_Mutation p.M1367T 0.14 benign(0.092) TCGA-D8-A142-01 14 105521843 105521843 G A GPR132 5'UTR 0.12 TCGA-D8-A142-01 14 38061398 38061398 G A FOXA1 Silent p.Y197Y 0.10 TCGA-D8-A142-01 15 83437686 83437686 G A FSD2 Missense_Mutation p.S500L 0.16 deleterious(0) probably_damaging(0.999) TCGA-D8-A142-01 15 89760499 89760499 C A RLBP1 Silent p.L66L 0.09 TCGA-D8-A142-01 16 2096293 2096293 C T NTHL1 Missense_Mutation p.D72N 0.45 tolerated(0.16) benign(0.002) TCGA-D8-A142-01 16 31097409 31097409 G A PRSS53 Silent p.D253D 0.10 TCGA-D8-A142-01 16 4626490 4626490 C - C16orf96 Frame_Shift_Del p.K671Sfs*4 0.33 TCGA-D8-A142-01 16 46991110 46991110 G C DNAJA2 Missense_Mutation p.S357C 0.07 deleterious(0) benign(0.353) TCGA-D8-A142-01 16 53281365 53281365 T C CHD9 Silent p.S1205S 0.04 TCGA-D8-A142-01 16 58550557 58550557 G C SETD6 Missense_Mutation p.A218P 0.14 deleterious(0) probably_damaging(0.993) TCGA-D8-A142-01 16 72146379 72146382 GCCC - DHX38 Frame_Shift_Del p.R1224Lfs*26 0.08 TCGA-D8-A142-01 16 8862091 8862091 C T ABAT Silent p.G215G 0.40 TCGA-D8-A142-01 17 27068158 27068158 C G NEK8 Missense_Mutation p.R599G 0.08 tolerated(0.32) benign(0.004) TCGA-D8-A142-01 17 27805320 27805320 C G TAOK1 Missense_Mutation p.A135G 0.11 deleterious(0.04) possibly_damaging(0.866) TCGA-D8-A142-01 17 42164814 42164814 G A HDAC5 Missense_Mutation p.P618L 0.07 tolerated(0.24) probably_damaging(0.996) TCGA-D8-A142-01 17 4389850 4389850 C T SPNS3 Silent p.D474D 0.20 TCGA-D8-A142-01 17 62500878 62500878 T A DDX5 Nonsense_Mutation p.K43* 0.09 TCGA-D8-A142-01 17 64219815 64219815 C T APOH Splice_Site p.X139_splice 0.45 TCGA-D8-A142-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.51 deleterious(0.01) probably_damaging(1) TCGA-D8-A142-01 19 11917679 11917679 G A ZNF491 Missense_Mutation p.C304Y 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A142-01 19 14583533 14583533 C T PTGER1 Missense_Mutation p.V350M 0.60 deleterious(0) probably_damaging(0.961) TCGA-D8-A142-01 19 16035659 16035659 C T CYP4F11 Missense_Mutation p.A187T 0.52 tolerated(1) benign(0.013) TCGA-D8-A142-01 19 21720707 21720707 G C ZNF429 Missense_Mutation p.E618Q 0.10 deleterious(0.01) benign(0.052) TCGA-D8-A142-01 19 40487109 40487109 T C PSMC4 Missense_Mutation p.L385S 0.35 tolerated(0.27) benign(0.007) TCGA-D8-A142-01 19 45731018 45731018 A G EXOC3L2 Silent p.R102R 0.06 TCGA-D8-A142-01 19 49858608 49858608 C T TEAD2 Silent p.A147A 0.05 TCGA-D8-A142-01 19 52001438 52001438 C A SIGLEC12 Missense_Mutation p.W413C 0.12 deleterious(0) probably_damaging(0.996) TCGA-D8-A142-01 19 53993860 53993860 G A ZNF813 Missense_Mutation p.R125Q 0.09 tolerated(1) benign(0.052) TCGA-D8-A142-01 19 55301626 55301626 G C CTB-61M7.1 RNA 0.03 TCGA-D8-A142-01 19 57954789 57954789 A T ZNF749 Silent p.S91S 0.07 TCGA-D8-A142-01 19 58197855 58197855 G T ZNF551 Missense_Mutation p.C71F 0.07 tolerated(0.17) benign(0.001) TCGA-D8-A142-01 1 152191586 152191586 C G HRNR Missense_Mutation p.S840T 0.08 unknown(0) TCGA-D8-A142-01 1 154966145 154966145 G A LENEP Missense_Mutation p.R21Q 0.39 tolerated_low_confidence(0.16) benign(0) TCGA-D8-A142-01 1 155005669 155005669 G A DCST2 Missense_Mutation p.R114C 0.06 deleterious(0) possibly_damaging(0.794) TCGA-D8-A142-01 1 155290277 155290277 G A FDPS Silent p.V379V 0.53 TCGA-D8-A142-01 1 169572282 169572282 A C SELP Missense_Mutation p.S563A 0.07 tolerated(0.41) benign(0.209) TCGA-D8-A142-01 1 197169544 197169544 T G ZBTB41 Missense_Mutation p.K20N 0.50 tolerated_low_confidence(0.05) benign(0.186) TCGA-D8-A142-01 1 212148707 212148707 T C INTS7 Missense_Mutation p.H539R 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-D8-A142-01 1 235901232 235901232 C T LYST Intron 0.23 TCGA-D8-A142-01 1 243328320 243328320 G C CEP170 Missense_Mutation p.S981C 0.08 deleterious(0.03) possibly_damaging(0.687) TCGA-D8-A142-01 1 245530473 245530473 C G KIF26B Missense_Mutation p.P268R 0.06 deleterious(0) unknown(0) TCGA-D8-A142-01 1 40214752 40214752 C T PPIE Missense_Mutation p.T229M 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-D8-A142-01 1 57140151 57140151 A C PRKAA2 Missense_Mutation p.E64D 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A142-01 1 57157158 57157158 C T PRKAA2 Missense_Mutation p.R110W 0.04 deleterious(0) possibly_damaging(0.843) TCGA-D8-A142-01 1 70446130 70446130 A G LRRC7 Silent p.L222L 0.11 TCGA-D8-A142-01 1 70641557 70641557 G A LRRC40 Missense_Mutation p.P305S 0.13 tolerated(0.06) probably_damaging(0.988) TCGA-D8-A142-01 20 13251277 13251277 G A ISM1 Missense_Mutation p.E89K 0.06 tolerated(0.24) benign(0.039) TCGA-D8-A142-01 20 23066566 23066566 C A CD93 Silent p.A88A 0.13 TCGA-D8-A142-01 20 43530358 43530358 C T YWHAB Missense_Mutation p.R62C 0.24 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-D8-A142-01 21 35890532 35890532 T G RCAN1 Silent p.A203A 0.16 TCGA-D8-A142-01 21 43645961 43645961 G T ABCG1 Missense_Mutation p.V75L 0.07 tolerated(0.18) benign(0.02) TCGA-D8-A142-01 22 19506411 19506411 C T CDC45 Missense_Mutation p.L593F 0.07 deleterious(0) probably_damaging(0.999) TCGA-D8-A142-01 22 22707542 22707542 C T IGLV5-48 Missense_Mutation p.R44C 0.31 deleterious(0) benign(0.022) TCGA-D8-A142-01 22 32614516 32614516 G A SLC5A4 Silent p.H655H 0.21 TCGA-D8-A142-01 22 40814951 40814951 G A MKL1 Silent p.L497L 0.12 TCGA-D8-A142-01 2 107049446 107049446 G C RGPD3 Missense_Mutation p.A805G 0.03 deleterious(0) benign(0.344) TCGA-D8-A142-01 2 109546598 109546598 C T EDAR Missense_Mutation p.G51E 0.05 tolerated(1) benign(0.241) TCGA-D8-A142-01 2 1271265 1271265 C T SNTG2 Silent p.N402N 0.33 TCGA-D8-A142-01 2 130951708 130951708 G C TUBA3E Missense_Mutation p.S236C 0.08 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-D8-A142-01 2 169826581 169826581 C A ABCB11 Missense_Mutation p.A595S 0.12 tolerated(0.5) benign(0.253) TCGA-D8-A142-01 2 174774949 174774949 C T SP3 Missense_Mutation p.R689H 0.05 deleterious(0) probably_damaging(0.983) TCGA-D8-A142-01 2 179396209 179396209 C G TTN Missense_Mutation p.D35045H 0.28 TCGA-D8-A142-01 2 179569129 179569129 C G TTN Missense_Mutation p.A9990P 0.12 TCGA-D8-A142-01 2 190327230 190327230 G A WDR75 Missense_Mutation p.G267S 0.12 deleterious(0.02) probably_damaging(1) TCGA-D8-A142-01 2 201435932 201435932 A G SGOL2 Missense_Mutation p.D288G 0.05 tolerated(0.1) benign(0.081) TCGA-D8-A142-01 2 234669767 234669767 C T UGT1A8 Intron 0.10 TCGA-D8-A142-01 2 240500438 240500438 G A AC079612.1 Missense_Mutation p.V107I 0.15 benign(0) TCGA-D8-A142-01 2 240954240 240954242 GAT - NDUFA10 In_Frame_Del p.I195del 0.18 TCGA-D8-A142-01 2 85571789 85571789 C T RETSAT Missense_Mutation p.R395Q 0.04 tolerated(0.31) benign(0.007) TCGA-D8-A142-01 3 109027096 109027096 C G DPPA2 Silent p.S147S 0.22 TCGA-D8-A142-01 3 123695754 123695754 C G ROPN1 Missense_Mutation p.R64P 0.09 tolerated(0.09) benign(0.008) TCGA-D8-A142-01 3 139092214 139092214 C T COPB2 Missense_Mutation p.G312E 0.06 deleterious(0) probably_damaging(0.984) TCGA-D8-A142-01 3 139236488 139236488 A G RBP1 Missense_Mutation p.V192A 0.06 deleterious(0.03) probably_damaging(0.938) TCGA-D8-A142-01 3 141011888 141011888 C G ACPL2 Silent p.V428V 0.09 TCGA-D8-A142-01 3 14708387 14708387 G A CCDC174 Silent p.E219E 0.17 TCGA-D8-A142-01 3 14862067 14862067 G A FGD5 Missense_Mutation p.V497I 0.67 deleterious(0) probably_damaging(0.994) TCGA-D8-A142-01 3 3067864 3067864 C T CNTN4 Missense_Mutation p.T522M 0.10 deleterious(0.01) possibly_damaging(0.86) TCGA-D8-A142-01 3 44612384 44612384 C G ZKSCAN7 Silent p.L594L 0.09 TCGA-D8-A142-01 3 52537392 52537392 C T STAB1 Silent p.L243L 0.09 TCGA-D8-A142-01 3 53908256 53908256 A C ACTR8 Silent p.T349T 0.17 TCGA-D8-A142-01 4 144797935 144797935 G C GYPE Missense_Mutation p.I70M 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.506) TCGA-D8-A142-01 4 146064523 146064523 C T OTUD4 Silent p.A494A 0.19 TCGA-D8-A142-01 4 158282695 158282695 C T GRIA2 Missense_Mutation p.P766L 0.13 deleterious(0.02) benign(0.137) TCGA-D8-A142-01 4 172735837 172735837 C A GALNTL6 Missense_Mutation p.L36M 0.09 tolerated(0.22) benign(0.047) TCGA-D8-A142-01 4 174223291 174223291 T C GALNT7 Silent p.G414G 0.12 TCGA-D8-A142-01 4 4314784 4314784 C G ZBTB49 Missense_Mutation p.T440S 0.10 deleterious(0.03) possibly_damaging(0.838) TCGA-D8-A142-01 4 7844983 7844983 G A AFAP1 Silent p.S143S 0.09 TCGA-D8-A142-01 4 80246759 80246759 C T NAA11 Missense_Mutation p.M91I 0.09 deleterious(0) benign(0.247) TCGA-D8-A142-01 5 137211662 137211662 C A MYOT Nonsense_Mutation p.C167* 0.44 TCGA-D8-A142-01 5 137844062 137844062 G A ETF1 Nonsense_Mutation p.R416* 0.14 TCGA-D8-A142-01 5 140242970 140242970 G A AC005609.1 Silent p.H2H 0.44 TCGA-D8-A142-01 5 180415904 180415904 A G BTNL3 5'UTR 0.11 TCGA-D8-A142-01 5 180670769 180670769 A G GNB2L1 Missense_Mutation p.L11P 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A142-01 5 21752184 21752184 C A CDH12 Missense_Mutation p.V683L 0.12 tolerated(0.09) benign(0.025) TCGA-D8-A142-01 5 32233991 32233991 A C MTMR12 Missense_Mutation p.V521G 0.44 deleterious(0) probably_damaging(0.999) TCGA-D8-A142-01 5 40853095 40853095 T G CARD6 Missense_Mutation p.F554C 0.08 deleterious(0) probably_damaging(0.91) TCGA-D8-A142-01 6 110942402 110942402 C G CDK19 Missense_Mutation p.D428H 0.30 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-D8-A142-01 6 124676437 124676437 G A NKAIN2 Missense_Mutation p.V73I 0.17 tolerated(0.26) benign(0.007) TCGA-D8-A142-01 6 135520049 135520049 T G MYB Missense_Mutation p.L524V 0.26 tolerated(0.05) possibly_damaging(0.681) TCGA-D8-A142-01 6 146276440 146276440 G C SHPRH Missense_Mutation p.R7G 0.12 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-D8-A142-01 6 1930453 1930453 C G GMDS Missense_Mutation p.V219L 0.04 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D8-A142-01 6 26285491 26285491 G T HIST1H4H Silent p.R79R 0.08 TCGA-D8-A142-01 6 2671544 2671544 C G MYLK4 Silent p.V386V 0.07 TCGA-D8-A142-01 6 28120996 28120996 G A ZKSCAN8 Missense_Mutation p.R313Q 0.11 tolerated(1) benign(0.003) TCGA-D8-A142-01 6 33636780 33636780 C T ITPR3 Missense_Mutation p.S679F 0.39 deleterious(0.03) benign(0.058) TCGA-D8-A142-01 6 33636799 33636799 C G ITPR3 Missense_Mutation p.I685M 0.43 tolerated(0.34) benign(0.02) TCGA-D8-A142-01 6 33636854 33636854 C G ITPR3 Missense_Mutation p.H704D 0.38 deleterious(0.04) benign(0.272) TCGA-D8-A142-01 6 33636922 33636922 C G ITPR3 Silent p.L726L 0.33 TCGA-D8-A142-01 6 43029294 43029294 C T KLC4 Missense_Mutation p.S92F 0.62 deleterious(0.03) probably_damaging(0.991) TCGA-D8-A142-01 6 44922267 44922267 T C SUPT3H Missense_Mutation p.I231V 0.03 tolerated(0.27) benign(0.037) TCGA-D8-A142-01 6 46135753 46135753 G A ENPP5 Missense_Mutation p.L83F 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A142-01 6 46787380 46787380 C A MEP1A Missense_Mutation p.H165Q 0.61 deleterious(0) probably_damaging(1) TCGA-D8-A142-01 6 576780 576780 C A EXOC2 Missense_Mutation p.S432I 0.06 tolerated(0.09) benign(0.094) TCGA-D8-A142-01 6 63989962 63989962 A T LGSN Silent p.A498A 0.24 TCGA-D8-A142-01 6 76640789 76640789 C T IMPG1 Silent p.A708A 0.26 TCGA-D8-A142-01 6 84862450 84862450 T G KIAA1009 Missense_Mutation p.N1148T 0.05 tolerated(0.18) benign(0.167) TCGA-D8-A142-01 6 84904772 84904772 C T KIAA1009 Missense_Mutation p.S286N 0.17 tolerated(1) benign(0.001) TCGA-D8-A142-01 6 86346776 86346776 C T SYNCRIP Missense_Mutation p.R192H 0.08 deleterious(0.03) possibly_damaging(0.833) TCGA-D8-A142-01 7 149463130 149463130 G A ZNF467 Missense_Mutation p.P154L 0.10 tolerated(1) benign(0.436) TCGA-D8-A142-01 7 151797885 151797885 A G GALNT11 Missense_Mutation p.M100V 0.10 tolerated(0.06) benign(0.066) TCGA-D8-A142-01 7 18833076 18833076 G T HDAC9 Splice_Site p.X774_splice 0.12 TCGA-D8-A142-01 7 37989823 37989823 A G EPDR1 Missense_Mutation p.Y167C 0.08 deleterious(0) probably_damaging(0.984) TCGA-D8-A142-01 7 42005086 42005086 G A GLI3 Silent p.N1195N 0.24 TCGA-D8-A142-01 7 63538793 63538793 G T ZNF727 Nonsense_Mutation p.E456* 0.10 TCGA-D8-A142-01 7 934986 934986 G C GET4 Missense_Mutation p.S304T 0.13 tolerated(0.14) benign(0.222) TCGA-D8-A142-01 7 98988555 98988555 G A ARPC1B Silent p.P180P 0.26 TCGA-D8-A142-01 8 110567027 110567027 G T EBAG9 Missense_Mutation p.G78W 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-D8-A142-01 8 121535678 121535678 C A MTBP 3'UTR 0.26 TCGA-D8-A142-01 8 124266845 124266845 G A ZHX1 Missense_Mutation p.P448S 0.10 tolerated(0.06) benign(0.046) TCGA-D8-A142-01 8 143996263 143996263 G C CYP11B2 Silent p.A219A 0.12 TCGA-D8-A142-01 8 27516828 27516828 G A SCARA3 Missense_Mutation p.V381M 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A142-01 8 35631900 35631900 C A UNC5D Silent p.P854P 0.16 TCGA-D8-A142-01 8 38275446 38275446 G A FGFR1 Silent p.I529I 0.45 TCGA-D8-A142-01 8 94934912 94934912 T C PDP1 Missense_Mutation p.F234L 0.07 tolerated(0.66) probably_damaging(0.946) TCGA-D8-A142-01 8 95158364 95158364 G A CDH17 Silent p.F653F 0.04 TCGA-D8-A142-01 9 140901245 140901245 A T CACNA1B Silent p.A667A 0.10 TCGA-D8-A142-01 X 122598837 122598837 C A GRIA3 Missense_Mutation p.A733D 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A142-01 X 12704307 12704307 G T FRMPD4 Missense_Mutation p.C222F 0.14 deleterious(0.01) benign(0.372) TCGA-D8-A142-01 X 139037975 139037975 G A CXorf66 3'UTR 0.19 TCGA-D8-A142-01 X 149639464 149639464 G C MAMLD1 Missense_Mutation p.G515A 0.09 deleterious(0.05) benign(0.136) TCGA-D8-A142-01 X 152860089 152860089 C T FAM58A Nonsense_Mutation p.W113* 0.15 TCGA-D8-A142-01 X 153051491 153051491 C T IDH3G Intron 0.11 TCGA-D8-A142-01 X 19854349 19854349 G T SH3KBP1 Missense_Mutation p.T19K 0.10 deleterious(0) benign(0.059) TCGA-D8-A142-01 X 41056635 41056635 G A USP9X Missense_Mutation p.G1418R 0.04 deleterious(0) possibly_damaging(0.844) TCGA-D8-A142-01 X 57620880 57620880 C G ZXDB Nonsense_Mutation p.S800* 0.11 TCGA-D8-A142-01 X 65819470 65819470 G T EDA2R Missense_Mutation p.S271R 0.08 deleterious(0.02) benign(0.029) TCGA-D8-A142-01 X 69456923 69456923 G C AWAT1 Missense_Mutation p.E95D 0.38 tolerated(0.18) benign(0.223) TCGA-D8-A143-01 10 43326387 43326387 T A BMS1 Missense_Mutation p.L1231Q 0.34 tolerated(0.61) benign(0.076) TCGA-D8-A143-01 10 60560727 60560727 A T BICC1 Missense_Mutation p.M646L 0.14 tolerated(0.21) possibly_damaging(0.698) TCGA-D8-A143-01 10 75114545 75114545 C G TTC18 Missense_Mutation p.V4L 0.37 tolerated_low_confidence(0.34) benign(0.054) TCGA-D8-A143-01 11 35219700 35219700 G C CD44 Missense_Mutation p.E277Q 0.08 tolerated(0.18) benign(0.206) TCGA-D8-A143-01 11 6789772 6789772 T A OR2AG2 Missense_Mutation p.R139S 0.44 tolerated(0.1) benign(0.023) TCGA-D8-A143-01 12 125397945 125397945 G C UBC Missense_Mutation p.Q125E 0.25 tolerated(0.09) benign(0.025) TCGA-D8-A143-01 12 131488811 131488811 C T GPR133 Nonsense_Mutation p.Q409* 0.27 TCGA-D8-A143-01 12 9307302 9307302 G A PZP Silent p.A1228A 0.09 TCGA-D8-A143-01 13 49033889 49033890 - TAGAACA RB1 Frame_Shift_Ins p.I679Rfs*15 0.28 TCGA-D8-A143-01 15 77328164 77328164 C G PSTPIP1 Missense_Mutation p.P336R 0.15 deleterious(0.01) benign(0.197) TCGA-D8-A143-01 15 78768612 78768612 C G IREB2 Missense_Mutation p.T369S 0.10 deleterious(0.01) benign(0.43) TCGA-D8-A143-01 16 23093870 23093870 G A USP31 Silent p.P613P 0.08 TCGA-D8-A143-01 16 71408680 71408682 GAA - CALB2 In_Frame_Del p.K69del 0.23 TCGA-D8-A143-01 17 10219317 10219317 G A MYH13 Missense_Mutation p.T1255M 0.81 deleterious(0.02) possibly_damaging(0.685) TCGA-D8-A143-01 17 49076837 49076837 C T SPAG9 Intron 0.29 TCGA-D8-A143-01 17 58503620 58503620 C A C17orf64 Missense_Mutation p.S84R 0.80 deleterious(0.01) probably_damaging(1) TCGA-D8-A143-01 17 7576851 7576851 A C TP53 Splice_Site p.X331_splice 0.80 TCGA-D8-A143-01 19 12980054 12980054 C A MAST1 Missense_Mutation p.A983D 0.34 deleterious(0) probably_damaging(1) TCGA-D8-A143-01 19 19766177 19766177 G T ATP13A1 Silent p.P494P 0.36 TCGA-D8-A143-01 19 38876680 38876680 G A GGN Missense_Mutation p.P408S 0.21 deleterious_low_confidence(0.03) unknown(0) TCGA-D8-A143-01 19 40901124 40901124 C A PRX Missense_Mutation p.L1045F 0.18 tolerated(0.06) possibly_damaging(0.765) TCGA-D8-A143-01 19 42388528 42388528 G T ARHGEF1 5'UTR 0.20 TCGA-D8-A143-01 19 52569631 52569631 C T ZNF841 Missense_Mutation p.V502M 0.21 tolerated(0.24) benign(0.18) TCGA-D8-A143-01 19 7698425 7698425 G C PCP2 5'UTR 0.20 TCGA-D8-A143-01 1 110590491 110590492 - GTGA STRIP1 Nonsense_Mutation 0.23 TCGA-D8-A143-01 1 112031583 112031583 C T ADORA3 Missense_Mutation p.C174Y 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D8-A143-01 1 150790498 150790498 C T ARNT Missense_Mutation p.S468N 0.10 tolerated(0.21) benign(0) TCGA-D8-A143-01 1 154144713 154144713 T A TPM3 Intron 0.08 TCGA-D8-A143-01 1 158297921 158297921 C T CD1B 3'UTR 0.20 TCGA-D8-A143-01 1 16525021 16525021 G A ARHGEF19 3'UTR 0.15 TCGA-D8-A143-01 1 169364427 169364427 C T CCDC181 Missense_Mutation p.R462Q 0.18 tolerated(0.17) benign(0.046) TCGA-D8-A143-01 1 169822076 169822076 C T C1orf112 Missense_Mutation p.A837V 0.09 tolerated(0.21) benign(0.005) TCGA-D8-A143-01 1 182517904 182517904 G A RGSL1 Missense_Mutation p.V960I 0.18 tolerated(1) benign(0.001) TCGA-D8-A143-01 1 186277245 186277245 C A PRG4 Silent p.A798A 0.18 TCGA-D8-A143-01 1 22180806 22180806 C A HSPG2 Missense_Mutation p.V2107F 0.31 possibly_damaging(0.904) TCGA-D8-A143-01 1 228556454 228556454 G T OBSCN Missense_Mutation p.R7557L 0.19 probably_damaging(0.986) TCGA-D8-A143-01 1 245772787 245772787 C T KIF26B Missense_Mutation p.S624F 0.41 deleterious(0.01) unknown(0) TCGA-D8-A143-01 1 40530205 40530205 C G CAP1 Missense_Mutation p.N166K 0.21 deleterious(0) probably_damaging(0.98) TCGA-D8-A143-01 1 6511895 6511895 C T ESPN Silent p.P688P 0.45 TCGA-D8-A143-01 20 18364945 18364945 C T DZANK1 3'UTR 0.27 TCGA-D8-A143-01 20 33577577 33577577 G T MYH7B Missense_Mutation p.C583F 0.18 probably_damaging(1) TCGA-D8-A143-01 21 41559154 41559154 C G DSCAM Missense_Mutation p.D895H 0.11 deleterious(0) possibly_damaging(0.722) TCGA-D8-A143-01 2 141130589 141130589 T G LRP1B Missense_Mutation p.S3586R 0.36 benign(0.001) TCGA-D8-A143-01 2 162757550 162757550 C T SLC4A10 Intron 0.17 TCGA-D8-A143-01 2 21228741 21228743 CTT - APOB In_Frame_Del p.E3666del 0.15 TCGA-D8-A143-01 2 44502636 44502636 A T SLC3A1 5'UTR 0.30 TCGA-D8-A143-01 3 111831902 111831902 G T C3orf52 Intron 0.21 TCGA-D8-A143-01 3 14860967 14860967 C T FGD5 Missense_Mutation p.A130V 0.50 tolerated_low_confidence(0.46) benign(0) TCGA-D8-A143-01 3 164700074 164700074 C T SI Missense_Mutation p.G1791E 0.09 tolerated(0.14) benign(0.001) TCGA-D8-A143-01 3 170843844 170843844 C T TNIK Missense_Mutation p.E624K 0.09 tolerated(0.41) probably_damaging(0.968) TCGA-D8-A143-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.39 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A143-01 4 121739601 121739601 A T PRDM5 Missense_Mutation p.L186H 0.23 tolerated(0.08) probably_damaging(0.914) TCGA-D8-A143-01 4 140280938 140280938 G A NAA15 Silent p.E433E 0.15 TCGA-D8-A143-01 4 79832817 79832817 C A BMP2K Nonsense_Mutation p.S1039* 0.31 TCGA-D8-A143-01 5 140263636 140263636 C T PCDHA13 Missense_Mutation p.R595C 0.36 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-D8-A143-01 6 54214608 54214608 C T TINAG Missense_Mutation p.R332W 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A143-01 7 11464427 11464427 G T THSD7A Missense_Mutation p.D1093E 0.30 tolerated(0.86) benign(0.074) TCGA-D8-A143-01 8 117657115 117657115 T A EIF3H 3'UTR 0.92 TCGA-D8-A143-01 8 136659298 136659312 TACAGAGACCAGCCA - KHDRBS3 In_Frame_Del p.R339_Y343del 0.23 TCGA-D8-A143-01 X 118985519 118985527 GTTTTTAAA - UPF3B In_Frame_Del p.F101_N103del 0.12 TCGA-D8-A143-01 X 119738688 119738688 C T MCTS1 5'UTR 0.39 TCGA-D8-A143-01 X 149818284 149818284 A - MTM1 Frame_Shift_Del p.V324* 0.16 TCGA-D8-A143-01 X 155130247 155130247 C T VAMP7 Silent p.N143N 0.09 TCGA-D8-A143-01 X 30254466 30254466 A - MAGEB3 Frame_Shift_Del p.S144Afs*25 0.13 TCGA-D8-A143-01 X 32490345 32490345 A T DMD Missense_Mutation p.L962H 0.06 probably_damaging(0.997) TCGA-D8-A143-01 X 46887478 46887478 T C JADE3 Silent p.C220C 0.14 TCGA-D8-A143-01 X 49645348 49645348 A T USP27X Missense_Mutation p.L146F 0.10 tolerated(0.17) benign(0.405) TCGA-D8-A143-01 X 49958079 49958079 G A AKAP4 Missense_Mutation p.R429C 0.54 deleterious(0) probably_damaging(1) TCGA-D8-A143-01 X 78622689 78622689 G C ITM2A Silent p.T8T 0.06 TCGA-D8-A145-01 10 1284322 1284322 C T ADARB2 Silent p.S411S 0.18 TCGA-D8-A145-01 11 13407269 13407269 A T ARNTL Missense_Mutation p.S550C 0.04 deleterious(0.02) benign(0.005) TCGA-D8-A145-01 11 18955940 18955940 C T MRGPRX1 Missense_Mutation p.R131H 0.09 tolerated(0.23) benign(0.08) TCGA-D8-A145-01 11 56058345 56058345 T C OR8H1 Missense_Mutation p.H65R 0.10 deleterious(0) possibly_damaging(0.796) TCGA-D8-A145-01 12 121202676 121202676 C T SPPL3 3'UTR 0.16 TCGA-D8-A145-01 12 25671812 25671812 A G IFLTD1 Missense_Mutation p.I369T 0.17 tolerated(0.16) benign(0.161) TCGA-D8-A145-01 16 2816579 2816579 G A SRRM2 Missense_Mutation p.R2017H 0.15 unknown(0) TCGA-D8-A145-01 16 53243700 53243700 A G CHD9 Missense_Mutation p.K587E 0.18 benign(0.051) TCGA-D8-A145-01 16 7647421 7647421 C T RBFOX1 Missense_Mutation p.P224S 0.06 deleterious(0.01) benign(0.437) TCGA-D8-A145-01 17 78264525 78264525 C T RNF213 Silent p.T423T 0.17 TCGA-D8-A145-01 17 8161431 8161431 G A PFAS Missense_Mutation p.R417Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-D8-A145-01 18 21485570 21485570 C A LAMA3 Missense_Mutation p.Q2234K 0.20 benign(0.005) TCGA-D8-A145-01 18 48256050 48256050 C T MAPK4 Silent p.D530D 0.26 TCGA-D8-A145-01 19 19762519 19762519 G A ATP13A1 Silent p.L772L 0.20 TCGA-D8-A145-01 19 39002709 39002709 C G RYR1 Intron 0.26 TCGA-D8-A145-01 1 118426246 118426246 G C GDAP2 Missense_Mutation p.L371V 0.18 tolerated(0.17) probably_damaging(0.999) TCGA-D8-A145-01 1 160012273 160012273 C G KCNJ10 Missense_Mutation p.S17T 0.21 tolerated(0.93) benign(0.007) TCGA-D8-A145-01 1 171154975 171154975 G C FMO2 Missense_Mutation p.W41C 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A145-01 1 204399113 204399113 C T PIK3C2B Missense_Mutation p.R1445Q 0.05 deleterious(0.01) possibly_damaging(0.836) TCGA-D8-A145-01 1 243319545 243319545 C - CEP170 Frame_Shift_Del p.A1297Lfs*6 0.17 TCGA-D8-A145-01 1 65330610 65330611 - T JAK1 Frame_Shift_Ins p.L346Tfs*4 0.18 TCGA-D8-A145-01 20 30309575 30309575 T A BCL2L1 Silent p.A149A 0.12 TCGA-D8-A145-01 20 36634694 36634694 G A TTI1 Missense_Mutation p.T803I 0.09 tolerated(0.1) benign(0.012) TCGA-D8-A145-01 20 51870353 51870353 A G TSHZ2 Missense_Mutation p.H119R 0.36 tolerated(0.58) benign(0.075) TCGA-D8-A145-01 20 61341001 61341001 C T NTSR1 Missense_Mutation p.R148C 0.11 deleterious(0) probably_damaging(0.979) TCGA-D8-A145-01 20 746114 746114 C A SLC52A3 Missense_Mutation p.G102V 0.09 tolerated(0.36) benign(0.001) TCGA-D8-A145-01 22 18022239 18022239 C T CECR2 Missense_Mutation p.R782C 0.30 deleterious(0) possibly_damaging(0.906) TCGA-D8-A145-01 2 133430792 133430792 G A NCKAP5 3'UTR 0.16 TCGA-D8-A145-01 2 152425880 152425880 A C NEB Missense_Mutation p.Y5813D 0.20 probably_damaging(1) TCGA-D8-A145-01 2 158991347 158991347 G C UPP2 Missense_Mutation p.R357P 0.10 deleterious(0) probably_damaging(0.989) TCGA-D8-A145-01 2 219114602 219114602 G A ARPC2 Missense_Mutation p.R279H 0.13 deleterious(0.01) benign(0.142) TCGA-D8-A145-01 3 101578255 101578258 AGTT - NFKBIZ 3'UTR 0.24 TCGA-D8-A145-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.23 tolerated(0.21) possibly_damaging(0.893) TCGA-D8-A145-01 3 193039554 193039554 C T ATP13A5 Missense_Mutation p.A611T 0.14 tolerated(0.54) benign(0.009) TCGA-D8-A145-01 3 196387275 196387275 C T NRROS Missense_Mutation p.T254M 0.12 tolerated(0.25) benign(0.073) TCGA-D8-A145-01 3 39307802 39307802 C G CX3CR1 Missense_Mutation p.D99H 0.17 deleterious(0) probably_damaging(1) TCGA-D8-A145-01 3 52420266 52420266 G A DNAH1 Missense_Mutation p.A2906T 0.18 probably_damaging(0.943) TCGA-D8-A145-01 4 110454805 110454805 T G SEC24B Silent p.L1184L 0.12 TCGA-D8-A145-01 5 112363013 112363013 C T MCC Missense_Mutation p.E1016K 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-D8-A145-01 5 170648770 170648770 G A RANBP17 Missense_Mutation p.R783H 0.03 deleterious(0) possibly_damaging(0.791) TCGA-D8-A145-01 5 37327737 37327737 A T NUP155 Missense_Mutation p.I673N 0.15 deleterious(0) probably_damaging(0.993) TCGA-D8-A145-01 6 167786668 167786668 T C TCP10 Missense_Mutation p.M324V 0.07 tolerated_low_confidence(0.46) benign(0.001) TCGA-D8-A145-01 6 41908208 41908208 A T CCND3 Missense_Mutation p.V105D 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-D8-A145-01 7 141740643 141740643 C T MGAM Missense_Mutation p.A832V 0.10 tolerated(0.42) benign(0.014) TCGA-D8-A145-01 7 84702349 84702349 G C SEMA3D Missense_Mutation p.H142D 0.08 deleterious(0.01) possibly_damaging(0.786) TCGA-D8-A145-01 8 6668927 6668927 C A XKR5 RNA 0.11 TCGA-D8-A145-01 8 9413735 9413735 A G TNKS Missense_Mutation p.I96V 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-D8-A145-01 X 10035453 10035453 A - WWC3 Frame_Shift_Del p.Q48Rfs*46 0.17 TCGA-D8-A145-01 X 54028588 54028588 C T PHF8 Missense_Mutation p.G417S 0.16 deleterious(0.05) benign(0.043) TCGA-D8-A145-01 X 54209032 54209032 G T FAM120C Missense_Mutation p.H200Q 0.20 deleterious(0) possibly_damaging(0.864) TCGA-D8-A145-01 X 84348197 84348197 T C SATL1 Intron 0.13 TCGA-D8-A146-01 10 120917220 120917220 A C SFXN4 Nonsense_Mutation p.L166* 0.22 TCGA-D8-A146-01 10 68687255 68687255 G A LRRTM3 Missense_Mutation p.R194Q 0.23 tolerated(0.1) probably_damaging(0.995) TCGA-D8-A146-01 11 128842336 128842336 T C ARHGAP32 Intron 0.05 TCGA-D8-A146-01 11 47498507 47498507 C A CELF1 Silent p.G324G 0.12 TCGA-D8-A146-01 11 67264729 67264729 G A PITPNM1 Missense_Mutation p.R707C 0.27 deleterious(0) probably_damaging(1) TCGA-D8-A146-01 12 31237587 31237588 - T DDX11 Frame_Shift_Ins p.A156Cfs*30 0.12 TCGA-D8-A146-01 12 57864465 57864465 C T GLI1 Missense_Mutation p.R648C 0.12 deleterious(0.05) possibly_damaging(0.726) TCGA-D8-A146-01 12 62786084 62786084 A G USP15 Silent p.K779K 0.28 TCGA-D8-A146-01 13 46054421 46054421 A G COG3 Missense_Mutation p.E182G 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-D8-A146-01 15 22383200 22383200 G A OR4N4 Missense_Mutation p.R243H 0.08 tolerated(1) benign(0) TCGA-D8-A146-01 15 85747556 85747556 C T AC044860.1 3'Flank 0.26 TCGA-D8-A146-01 16 20994169 20994169 C T DNAH3 Missense_Mutation p.R2578Q 0.12 deleterious(0.01) possibly_damaging(0.906) TCGA-D8-A146-01 17 79478289 79478289 G C ACTG1 Missense_Mutation p.P243A 0.21 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-D8-A146-01 17 80401964 80401964 G A C17orf62 Silent p.F160F 0.31 TCGA-D8-A146-01 18 20573334 20573361 AATTTAGGCAAGTGACTCTTTATGAGGC - RBBP8 Frame_Shift_Del p.K515Ifs*2 0.25 TCGA-D8-A146-01 19 35232612 35232612 C T ZNF181 Silent p.F442F 0.23 TCGA-D8-A146-01 19 49643310 49643310 G A PPFIA3 Missense_Mutation p.R778Q 0.13 tolerated(0.1) probably_damaging(0.961) TCGA-D8-A146-01 19 58370865 58370865 G A ZNF587 Missense_Mutation p.R362H 0.20 tolerated(0.19) benign(0) TCGA-D8-A146-01 1 165721373 165721373 A T TMCO1 Missense_Mutation p.C148S 0.09 tolerated(0.34) benign(0.01) TCGA-D8-A146-01 1 175067535 175067535 C T TNN Silent p.D641D 0.22 TCGA-D8-A146-01 1 32828380 32828380 A G TSSK3 Silent p.E26E 0.09 TCGA-D8-A146-01 1 82409087 82409087 G A LPHN2 Missense_Mutation p.A278T 0.06 tolerated(0.06) probably_damaging(0.992) TCGA-D8-A146-01 20 44680375 44680375 C T SLC12A5 Missense_Mutation p.S771F 0.22 deleterious(0) possibly_damaging(0.832) TCGA-D8-A146-01 20 47863858 47863858 C T ZNFX1 Nonsense_Mutation p.W1901* 0.39 TCGA-D8-A146-01 22 39218663 39218663 C T NPTXR Missense_Mutation p.G485D 0.31 deleterious(0) probably_damaging(1) TCGA-D8-A146-01 2 170672017 170672017 C T METTL5 Missense_Mutation p.E171K 0.12 tolerated(0.14) benign(0.052) TCGA-D8-A146-01 2 175264705 175264705 G A SCRN3 Missense_Mutation p.R72H 0.29 deleterious(0) probably_damaging(0.982) TCGA-D8-A146-01 2 234680926 234680926 G A UGT1A4 Missense_Mutation p.M442I 0.18 deleterious(0.01) benign(0.001) TCGA-D8-A146-01 2 27430388 27430388 A C SLC5A6 Missense_Mutation p.L44R 0.28 deleterious(0) probably_damaging(0.984) TCGA-D8-A146-01 3 113188081 113188081 G A SPICE1 Missense_Mutation p.L206F 0.05 deleterious(0) probably_damaging(0.999) TCGA-D8-A146-01 3 130145079 130145079 C A COL6A5 Missense_Mutation p.Q1729K 0.14 tolerated(0.94) benign(0.003) TCGA-D8-A146-01 3 170110214 170110214 A G SKIL 3'UTR 0.17 TCGA-D8-A146-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.34 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A146-01 3 52863161 52863161 C T ITIH4 Silent p.K75K 0.29 TCGA-D8-A146-01 3 56469127 56469127 A G ERC2 5'UTR 0.10 TCGA-D8-A146-01 5 157073789 157073789 G A SOX30 Nonsense_Mutation p.R415* 0.18 TCGA-D8-A146-01 6 37429325 37429325 G T CMTR1 Missense_Mutation p.G366C 0.36 deleterious(0) probably_damaging(0.998) TCGA-D8-A146-01 6 7580379 7580379 C T DSP Missense_Mutation p.T1319I 0.25 probably_damaging(0.996) TCGA-D8-A146-01 7 75611375 75611375 C T POR Intron 0.31 TCGA-D8-A146-01 8 16921636 16921636 C - MICU3 Frame_Shift_Del p.T143Hfs*13 0.22 TCGA-D8-A146-01 X 149101992 149101992 T C CXorf40B Missense_Mutation p.Q34R 0.26 tolerated(0.16) benign(0.014) TCGA-D8-A146-01 X 149638546 149638546 C T MAMLD1 Missense_Mutation p.A209V 0.10 tolerated(1) benign(0.027) TCGA-D8-A146-01 X 73961112 73961112 T C KIAA2022 Missense_Mutation p.T1094A 0.31 tolerated(0.06) benign(0.005) TCGA-D8-A146-01 X 8433418 8433418 G A VCX3B 5'UTR 0.06 TCGA-D8-A147-01 10 117849400 117849400 T C GFRA1 Missense_Mutation p.D350G 0.06 deleterious(0.01) possibly_damaging(0.88) TCGA-D8-A147-01 10 128974090 128974090 G C FAM196A Silent p.V190V 0.08 TCGA-D8-A147-01 10 13166106 13166106 G C OPTN Missense_Mutation p.E332Q 0.11 deleterious(0.01) possibly_damaging(0.871) TCGA-D8-A147-01 10 17363189 17363189 C A ST8SIA6 Missense_Mutation p.K295N 0.28 deleterious(0.02) possibly_damaging(0.735) TCGA-D8-A147-01 10 18112248 18112248 A G MRC1 Missense_Mutation p.Y89C 0.40 deleterious(0.02) probably_damaging(0.978) TCGA-D8-A147-01 10 27324552 27324552 A C ANKRD26 Missense_Mutation p.F943V 0.26 tolerated(0.34) benign(0.004) TCGA-D8-A147-01 10 44053205 44053205 T G ZNF239 Missense_Mutation p.K108T 0.10 tolerated(0.57) benign(0) TCGA-D8-A147-01 10 70405672 70405672 T C TET1 Silent p.D1062D 0.38 TCGA-D8-A147-01 10 94653185 94653185 G A EXOC6 Missense_Mutation p.E61K 0.14 deleterious(0.04) benign(0.202) TCGA-D8-A147-01 11 103178535 103178535 A T DYNC2H1 Missense_Mutation p.Q3830L 0.77 probably_damaging(0.923) TCGA-D8-A147-01 11 124623780 124623780 G A ESAM Missense_Mutation p.S312F 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A147-01 11 21556009 21556009 A G NELL1 Missense_Mutation p.S579G 0.28 tolerated(0.09) possibly_damaging(0.739) TCGA-D8-A147-01 11 27406878 27406878 T C LGR4 Missense_Mutation p.Q180R 0.16 tolerated(0.06) probably_damaging(0.99) TCGA-D8-A147-01 11 48266932 48266932 C - OR4X2 Frame_Shift_Del p.L93Ffs*17 0.14 TCGA-D8-A147-01 11 55703108 55703108 G A OR5I1 Missense_Mutation p.L257F 0.36 deleterious(0.01) possibly_damaging(0.883) TCGA-D8-A147-01 11 5624731 5624731 C G TRIM6 Nonsense_Mutation p.Y91* 0.21 TCGA-D8-A147-01 11 65983634 65983634 C T PACS1 Silent p.H235H 0.32 TCGA-D8-A147-01 11 71148981 71148981 G A DHCR7 Silent p.Y280Y 0.37 TCGA-D8-A147-01 11 92533362 92533362 A T FAT3 Missense_Mutation p.N2395Y 0.66 benign(0.318) TCGA-D8-A147-01 12 100729669 100729669 G C SCYL2 Missense_Mutation p.Q670H 0.43 tolerated(0.13) benign(0.001) TCGA-D8-A147-01 12 109221167 109221167 C G SSH1 Intron 0.10 TCGA-D8-A147-01 12 118582484 118582484 G T PEBP1 Missense_Mutation p.G147V 0.20 tolerated(0.18) benign(0.116) TCGA-D8-A147-01 12 49957250 49957250 C T MCRS1 Missense_Mutation p.E226K 0.24 deleterious(0) probably_damaging(0.989) TCGA-D8-A147-01 12 68051909 68051909 C T DYRK2 Silent p.L408L 0.08 TCGA-D8-A147-01 12 70954554 70954554 C G PTPRB Silent p.T1443T 0.07 TCGA-D8-A147-01 12 7527924 7527924 C G CD163L1 Missense_Mutation p.G985A 0.20 deleterious(0.01) probably_damaging(1) TCGA-D8-A147-01 12 75716789 75716789 G C CAPS2 Missense_Mutation p.Q105E 0.44 tolerated(0.09) benign(0.006) TCGA-D8-A147-01 12 85546835 85546835 T A LRRIQ1 Missense_Mutation p.F1485I 0.15 tolerated(0.41) benign(0.031) TCGA-D8-A147-01 12 95546743 95546743 T G FGD6 Missense_Mutation p.K871N 0.23 deleterious(0) probably_damaging(0.973) TCGA-D8-A147-01 13 37583667 37583667 A G SUPT20H 3'UTR 0.44 TCGA-D8-A147-01 13 46115702 46115702 C T FAM194B Silent p.L662L 0.48 TCGA-D8-A147-01 14 23883233 23883233 G A MYH7 Missense_Mutation p.R1880C 0.10 deleterious(0) probably_damaging(0.996) TCGA-D8-A147-01 14 38292962 38292962 T C TTC6 Missense_Mutation p.F1592L 0.10 tolerated(0.49) probably_damaging(0.96) TCGA-D8-A147-01 14 55310491 55310491 C G GCH1 3'UTR 0.17 TCGA-D8-A147-01 14 65528172 65528172 C G FNTB 3'UTR 0.37 TCGA-D8-A147-01 14 93709023 93709023 G A BTBD7 Missense_Mutation p.P999S 0.62 tolerated_low_confidence(0.12) probably_damaging(0.979) TCGA-D8-A147-01 15 31239429 31239429 G C MTMR10 Silent p.S484S 0.39 TCGA-D8-A147-01 15 34530592 34530592 T A SLC12A6 Silent p.R881R 0.06 TCGA-D8-A147-01 15 42144921 42144921 C G SPTBN5 Missense_Mutation p.D3454H 0.39 probably_damaging(0.973) TCGA-D8-A147-01 15 49420938 49420938 G A COPS2 Missense_Mutation p.A390V 0.27 tolerated(0.24) benign(0.021) TCGA-D8-A147-01 16 2112513 2112513 A T TSC2 Missense_Mutation p.N425Y 0.23 deleterious(0.03) possibly_damaging(0.863) TCGA-D8-A147-01 16 30018135 30018135 G T DOC2A Silent p.V283V 0.16 TCGA-D8-A147-01 16 34624396 34624396 T A RP11-488I20.3 RNA 0.30 TCGA-D8-A147-01 16 66592170 66592170 A T CKLF Missense_Mutation p.E52D 0.50 deleterious(0.01) probably_damaging(0.941) TCGA-D8-A147-01 16 70310423 70310423 C G AARS Missense_Mutation p.D149H 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A147-01 16 70834844 70834844 C A VAC14 5'UTR 0.20 TCGA-D8-A147-01 16 89590445 89590445 G A SPG7 Silent p.Q136Q 0.17 TCGA-D8-A147-01 17 18082136 18082136 C A MYO15A Silent p.A3515A 0.58 TCGA-D8-A147-01 17 41154788 41154788 A C RPL27 Missense_Mutation p.K117T 0.05 tolerated(0.21) benign(0.082) TCGA-D8-A147-01 17 43227034 43227034 G A HEXIM1 Silent p.K159K 0.24 TCGA-D8-A147-01 17 47688699 47688699 C G SPOP Missense_Mutation p.D201H 0.18 deleterious(0) probably_damaging(0.989) TCGA-D8-A147-01 17 48741442 48741442 G A ABCC3 Silent p.Q436Q 0.08 TCGA-D8-A147-01 17 49091680 49091680 C G SPAG9 Missense_Mutation p.D376H 0.16 deleterious(0.04) possibly_damaging(0.548) TCGA-D8-A147-01 17 57768127 57768127 G C CLTC Intron 0.16 TCGA-D8-A147-01 17 61601567 61601567 C G KCNH6 Missense_Mutation p.F48L 0.19 deleterious(0.04) probably_damaging(1) TCGA-D8-A147-01 17 61885236 61885236 T A DDX42 Nonsense_Mutation p.C333* 0.05 TCGA-D8-A147-01 17 61902766 61902766 G C FTSJ3 Missense_Mutation p.A144G 0.10 deleterious(0.03) possibly_damaging(0.758) TCGA-D8-A147-01 17 73498604 73498604 G A CASKIN2 Missense_Mutation p.R851W 0.13 deleterious(0.01) probably_damaging(0.963) TCGA-D8-A147-01 17 74068454 74068454 T C SRP68 Missense_Mutation p.E40G 0.55 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A147-01 17 74093964 74093964 C T EXOC7 Missense_Mutation p.D185N 0.05 tolerated(0.25) benign(0.183) TCGA-D8-A147-01 17 74564806 74564825 GTAGCTGATGAAGTCCGGAT - ST6GALNAC2 Frame_Shift_Del p.H276Pfs*12 0.12 TCGA-D8-A147-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.57 deleterious(0) probably_damaging(0.993) TCGA-D8-A147-01 18 42643634 42643634 C G SETBP1 Missense_Mutation p.R1588G 0.60 deleterious_low_confidence(0) possibly_damaging(0.538) TCGA-D8-A147-01 18 60642850 60642850 A G PHLPP1 Missense_Mutation p.I1326V 0.17 tolerated(0.17) benign(0.173) TCGA-D8-A147-01 19 11468358 11468358 A G DKFZP761J1410 Silent p.G3G 0.34 TCGA-D8-A147-01 19 20188827 20188827 G T ZNF90 5'Flank 0.17 TCGA-D8-A147-01 19 2328597 2328597 C T LSM7 5'UTR 0.65 TCGA-D8-A147-01 19 30054780 30054780 C A VSTM2B Missense_Mutation p.P266Q 0.09 deleterious(0) possibly_damaging(0.804) TCGA-D8-A147-01 19 31039063 31039063 C T ZNF536 Missense_Mutation p.P846L 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A147-01 19 35758354 35758354 C G LSR Missense_Mutation p.P544R 0.11 tolerated(0.07) possibly_damaging(0.736) TCGA-D8-A147-01 19 40581287 40581287 A G ZNF780A Silent p.I355I 0.12 TCGA-D8-A147-01 19 42794664 42794664 G C CIC Missense_Mutation p.A582P 0.21 benign(0) TCGA-D8-A147-01 19 42841097 42841097 G T MEGF8 Silent p.V461V 0.17 TCGA-D8-A147-01 19 43702358 43702358 A G PSG4 Missense_Mutation p.L167S 0.04 deleterious(0.01) probably_damaging(1) TCGA-D8-A147-01 19 4555004 4555004 G A SEMA6B Silent p.D222D 0.25 TCGA-D8-A147-01 19 46823710 46823710 G C HIF3A Missense_Mutation p.E346Q 0.31 tolerated(0.22) probably_damaging(0.999) TCGA-D8-A147-01 19 57325217 57325217 G C PEG3 Missense_Mutation p.I1531M 0.23 deleterious(0.03) benign(0.346) TCGA-D8-A147-01 1 109804229 109804229 G T CELSR2 Missense_Mutation p.V1426F 0.10 deleterious(0) possibly_damaging(0.836) TCGA-D8-A147-01 1 114240200 114240200 G C PHTF1 3'UTR 0.19 TCGA-D8-A147-01 1 120839746 120839746 G C FAM72B 5'UTR 0.36 TCGA-D8-A147-01 1 149943124 149943124 G A OTUD7B Silent p.V47V 0.09 TCGA-D8-A147-01 1 153736642 153736642 G A INTS3 Missense_Mutation p.E624K 0.52 tolerated(0.37) benign(0.233) TCGA-D8-A147-01 1 153737460 153737460 C G INTS3 Missense_Mutation p.L671V 0.06 tolerated(0.96) benign(0.001) TCGA-D8-A147-01 1 154516883 154516883 C A TDRD10 Silent p.T229T 0.48 TCGA-D8-A147-01 1 158368709 158368709 G T OR10T2 Missense_Mutation p.A183E 0.23 tolerated(0.25) possibly_damaging(0.805) TCGA-D8-A147-01 1 160783459 160783459 C G LY9 Missense_Mutation p.S163C 0.04 deleterious(0.01) probably_damaging(0.992) TCGA-D8-A147-01 1 162745606 162745606 C A DDR2 Missense_Mutation p.S674Y 0.29 deleterious(0.03) possibly_damaging(0.516) TCGA-D8-A147-01 1 177929979 177929979 G A SEC16B Missense_Mutation p.P295S 0.29 deleterious(0.04) possibly_damaging(0.777) TCGA-D8-A147-01 1 179520518 179520518 G A NPHS2 Silent p.G314G 0.40 TCGA-D8-A147-01 1 18618477 18618477 G T IGSF21 Missense_Mutation p.V101L 0.17 tolerated(0.56) benign(0.059) TCGA-D8-A147-01 1 200801329 200801329 C G CAMSAP2 Missense_Mutation p.A216G 0.03 deleterious(0.05) benign(0.276) TCGA-D8-A147-01 1 200818901 200818901 C G CAMSAP2 Missense_Mutation p.P1002A 0.51 deleterious(0) probably_damaging(1) TCGA-D8-A147-01 1 202287825 202287825 G T LGR6 Silent p.L798L 0.58 TCGA-D8-A147-01 1 223567407 223567407 C G C1orf65 Missense_Mutation p.S197W 0.06 deleterious(0) probably_damaging(0.998) TCGA-D8-A147-01 1 231488731 231488731 C G SPRTN Missense_Mutation p.S365C 0.18 deleterious(0.02) probably_damaging(0.935) TCGA-D8-A147-01 1 246704217 246704217 T G TFB2M 3'UTR 0.08 TCGA-D8-A147-01 1 248737974 248737974 C T OR2T34 Missense_Mutation p.A29T 0.09 tolerated(0.68) benign(0.03) TCGA-D8-A147-01 1 28128254 28128254 G T STX12 Missense_Mutation p.Q118H 0.20 deleterious(0) probably_damaging(0.995) TCGA-D8-A147-01 1 34076840 34076840 G A CSMD2 Silent p.I2008I 0.23 TCGA-D8-A147-01 1 43907741 43907744 GAGC - SZT2 Frame_Shift_Del p.E2548Gfs*47 0.37 TCGA-D8-A147-01 1 43907753 43907753 C T SZT2 Silent p.L2552L 0.30 TCGA-D8-A147-01 1 46726979 46726979 C T RAD54L Silent p.L271L 0.08 TCGA-D8-A147-01 1 54640255 54640255 C T CYB5RL 3'UTR 0.62 TCGA-D8-A147-01 1 66838157 66838157 G T PDE4B Missense_Mutation p.R669S 0.14 tolerated_low_confidence(0.66) benign(0.002) TCGA-D8-A147-01 1 76254953 76254953 T A RABGGTB Missense_Mutation p.F74Y 0.29 tolerated(0.23) benign(0.085) TCGA-D8-A147-01 1 79107183 79107183 G C IFI44L Missense_Mutation p.A405P 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-D8-A147-01 20 1514937 1514937 C A SIRPD 3'UTR 0.18 TCGA-D8-A147-01 20 31652642 31652642 C T BPIFB3 Silent p.T305T 0.17 TCGA-D8-A147-01 20 34219092 34219092 C G CPNE1 Missense_Mutation p.E274Q 0.06 tolerated(0.27) benign(0.288) TCGA-D8-A147-01 20 44168036 44168036 G T WFDC6 Nonsense_Mutation p.S4* 0.14 TCGA-D8-A147-01 20 44168052 44168052 G A WFDC6 5'UTR 0.15 TCGA-D8-A147-01 20 6011956 6011956 G A CRLS1 Silent p.S200S 0.17 TCGA-D8-A147-01 20 62597959 62597959 T A ZNF512B Missense_Mutation p.K190M 0.16 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D8-A147-01 21 11021189 11021189 G C BAGE2 RNA 0.03 TCGA-D8-A147-01 21 34861510 34861510 G A DNAJC28 Missense_Mutation p.A64V 0.03 tolerated(0.51) benign(0.02) TCGA-D8-A147-01 21 37505205 37505205 C T CBR3 5'Flank 0.21 TCGA-D8-A147-01 21 38525425 38525425 G A TTC3 Missense_Mutation p.R863K 0.14 tolerated(0.75) benign(0.005) TCGA-D8-A147-01 21 47845764 47845764 G C PCNT Missense_Mutation p.R2400P 0.26 benign(0.053) TCGA-D8-A147-01 22 20748822 20748822 C A ZNF74 5'UTR 0.33 TCGA-D8-A147-01 22 31338115 31338115 C G MORC2 Missense_Mutation p.K128N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A147-01 22 43089316 43089316 G C A4GALT Nonsense_Mutation p.Y214* 0.75 TCGA-D8-A147-01 22 45972921 45972921 C A FBLN1 Missense_Mutation p.D635E 0.23 tolerated(0.17) possibly_damaging(0.739) TCGA-D8-A147-01 22 51007768 51007768 C T CPT1B Silent p.%3D 0.19 TCGA-D8-A147-01 2 109116061 109116061 C G GCC2 Missense_Mutation p.S1612C 0.04 deleterious(0) probably_damaging(0.999) TCGA-D8-A147-01 2 109546645 109546650 CTCGTT - EDAR In_Frame_Del p.N34_E35del 0.13 TCGA-D8-A147-01 2 112725734 112725734 G A MERTK Missense_Mutation p.E289K 0.06 tolerated(0.27) benign(0.034) TCGA-D8-A147-01 2 128346067 128346067 A C MYO7B Missense_Mutation p.L597F 0.25 tolerated(0.57) benign(0.409) TCGA-D8-A147-01 2 170055347 170055347 C G LRP2 Missense_Mutation p.D2843H 0.08 probably_damaging(0.998) TCGA-D8-A147-01 2 179443774 179443774 C G TTN Missense_Mutation p.M22661I 0.13 TCGA-D8-A147-01 2 196912145 196912145 G C DNAH7 Missense_Mutation p.S110C 0.60 deleterious(0.03) benign(0.001) TCGA-D8-A147-01 2 197541323 197541323 G C CCDC150 Missense_Mutation p.Q436H 0.11 tolerated(0.08) possibly_damaging(0.667) TCGA-D8-A147-01 2 210761052 210761052 G C UNC80 Missense_Mutation p.S1433T 0.50 probably_damaging(0.961) TCGA-D8-A147-01 2 220332106 220332128 TACATGAGGACGACAGTGGCGTC - SPEG Frame_Shift_Del p.E1033Lfs*9 0.21 TCGA-D8-A147-01 2 223066653 223066653 C A PAX3 Intron 0.07 TCGA-D8-A147-01 2 239353225 239353225 A C ASB1 Missense_Mutation p.H246P 0.20 deleterious(0) probably_damaging(0.987) TCGA-D8-A147-01 2 242615499 242615499 C T DTYMK 3'UTR 0.28 TCGA-D8-A147-01 2 25358467 25358467 C T EFR3B Silent p.F481F 0.40 TCGA-D8-A147-01 2 29092767 29092767 G A TRMT61B Missense_Mutation p.S126L 0.15 tolerated(0.28) benign(0.014) TCGA-D8-A147-01 2 61522344 61522344 C G USP34 Missense_Mutation p.A1446P 0.07 deleterious(0.05) benign(0.445) TCGA-D8-A147-01 2 74777385 74777385 G A LOXL3 Missense_Mutation p.T135M 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-D8-A147-01 2 87239963 87239963 C T RGPD1 3'UTR 0.19 TCGA-D8-A147-01 2 96955039 96955039 G C SNRNP200 Missense_Mutation p.P1007A 0.03 deleterious(0.03) benign(0.168) TCGA-D8-A147-01 3 121417739 121417739 G T GOLGB1 Missense_Mutation p.S544Y 0.37 possibly_damaging(0.789) TCGA-D8-A147-01 3 123983362 123983362 G A KALRN Missense_Mutation p.R92H 0.24 tolerated(0.22) benign(0.01) TCGA-D8-A147-01 3 134670529 134670529 C T EPHB1 Missense_Mutation p.S147F 0.09 deleterious(0) probably_damaging(0.992) TCGA-D8-A147-01 3 140997234 140997234 C G ACPL2 Missense_Mutation p.R44G 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D8-A147-01 3 183778276 183778276 C A HTR3C 3'UTR 0.07 TCGA-D8-A147-01 3 195510877 195510877 T A MUC4 Missense_Mutation p.D2525V 0.13 benign(0.132) TCGA-D8-A147-01 3 197619514 197619514 T C IQCG Silent p.Q360Q 0.11 TCGA-D8-A147-01 3 38951660 38951660 A G SCN11A Missense_Mutation p.I333T 0.48 tolerated(0.42) benign(0.03) TCGA-D8-A147-01 3 50005040 50005040 C T RBM6 Missense_Mutation p.S61L 0.17 tolerated_low_confidence(0.11) benign(0.158) TCGA-D8-A147-01 3 50340470 50340470 C G HYAL1 5'UTR 0.38 TCGA-D8-A147-01 4 151153951 151153951 C A DCLK2 Missense_Mutation p.H530N 0.08 deleterious(0.02) probably_damaging(0.918) TCGA-D8-A147-01 4 38691562 38691562 G A KLF3 Intron 0.27 TCGA-D8-A147-01 4 79385204 79385204 G C FRAS1 Missense_Mutation p.D2265H 0.05 possibly_damaging(0.841) TCGA-D8-A147-01 5 102526670 102526670 G C PPIP5K2 Missense_Mutation p.K1139N 0.32 tolerated_low_confidence(0.26) benign(0.062) TCGA-D8-A147-01 5 10410284 10410284 G A MARCH6 Silent p.L529L 0.24 TCGA-D8-A147-01 5 176910945 176910945 C G PDLIM7 Missense_Mutation p.D404H 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A147-01 5 179744011 179744011 A C GFPT2 Missense_Mutation p.S336A 0.13 deleterious(0.02) benign(0.294) TCGA-D8-A147-01 5 180045774 180045774 T C FLT4 Silent p.Q999Q 0.41 TCGA-D8-A147-01 5 78328517 78328517 G A DMGDH Nonsense_Mutation p.Q504* 0.16 TCGA-D8-A147-01 6 106967547 106967547 G A AIM1 Missense_Mutation p.D414N 0.22 tolerated_low_confidence(0.43) benign(0.006) TCGA-D8-A147-01 6 125569511 125569511 A G TPD52L1 Missense_Mutation p.K123R 0.14 tolerated(1) benign(0.007) TCGA-D8-A147-01 6 149997698 149997708 TAGCAACACTT - LATS1 Frame_Shift_Del p.E920Afs*9 0.22 TCGA-D8-A147-01 6 170200923 170200939 ACAGCTCCTTCTGGCCG - LINC00574 Splice_Site 0.42 TCGA-D8-A147-01 6 18122300 18122300 C A NHLRC1 Missense_Mutation p.V180F 0.14 deleterious(0) probably_damaging(0.989) TCGA-D8-A147-01 6 29692892 29692892 C G HLA-F Missense_Mutation p.A232G 0.13 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-D8-A147-01 6 32407683 32407683 C T HLA-DRA 5'UTR 0.47 TCGA-D8-A147-01 6 33703104 33703104 G C IP6K3 Missense_Mutation p.F50L 0.33 deleterious(0) benign(0.341) TCGA-D8-A147-01 6 35836837 35836837 C T SRPK1 Missense_Mutation p.A488T 0.47 deleterious(0.03) probably_damaging(0.955) TCGA-D8-A147-01 6 36937843 36937843 A G MTCH1 Missense_Mutation p.I340T 0.30 tolerated(0.11) benign(0.415) TCGA-D8-A147-01 6 42604776 42604776 A G UBR2 Missense_Mutation p.K568E 0.09 tolerated(1) benign(0.003) TCGA-D8-A147-01 6 71235917 71235917 G T FAM135A Missense_Mutation p.G1044C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D8-A147-01 6 8016001 8016001 T G BLOC1S5 Missense_Mutation p.M149L 0.21 tolerated(0.47) benign(0.009) TCGA-D8-A147-01 6 84303249 84303249 G A SNAP91 Silent p.T548T 0.48 TCGA-D8-A147-01 6 99374449 99374449 G C FBXL4 Missense_Mutation p.A139G 0.36 tolerated(0.17) benign(0.036) TCGA-D8-A147-01 7 1132425 1132425 C G GPER1 Missense_Mutation p.A354G 0.07 tolerated_low_confidence(0.07) benign(0.08) TCGA-D8-A147-01 7 147675016 147675016 G C CNTNAP2 Missense_Mutation p.G773A 0.22 tolerated(0.66) benign(0.168) TCGA-D8-A147-01 7 150325286 150325286 G A GIMAP6 Missense_Mutation p.R134W 0.12 deleterious(0.03) possibly_damaging(0.761) TCGA-D8-A147-01 7 150711318 150711318 A G ATG9B 3'UTR 0.38 TCGA-D8-A147-01 7 2304030 2304030 A G SNX8 Missense_Mutation p.Y229H 0.54 tolerated(0.36) benign(0.005) TCGA-D8-A147-01 7 30825584 30825609 TGGGCCCATCGCCAGCTCCCCACAGG - FAM188B Splice_Site p.X215_splice 0.60 TCGA-D8-A147-01 7 63538002 63538002 G C ZNF727 Missense_Mutation p.R192T 0.30 tolerated(0.16) benign(0.187) TCGA-D8-A147-01 7 64527354 64527354 G C SNORA22 3'Flank 0.20 TCGA-D8-A147-01 7 72437382 72437382 C G TRIM74 Intron 0.12 TCGA-D8-A147-01 7 81589141 81589141 A T CACNA2D1 Missense_Mutation p.F991I 0.10 tolerated(0.31) possibly_damaging(0.479) TCGA-D8-A147-01 7 97823289 97823289 C G LMTK2 Missense_Mutation p.S1171C 0.37 deleterious(0.03) benign(0.021) TCGA-D8-A147-01 8 110499050 110499050 G - PKHD1L1 Frame_Shift_Del 0.26 TCGA-D8-A147-01 8 113960102 113960103 - TTT CSMD3 In_Frame_Ins p.L474_N475insK 0.15 TCGA-D8-A147-01 8 128753130 128753130 G A MYC Missense_Mutation p.E431K 0.20 tolerated(0.3) benign(0.423) TCGA-D8-A147-01 8 134260979 134260979 C G NDRG1 Missense_Mutation p.G245A 0.12 tolerated(0.13) benign(0.079) TCGA-D8-A147-01 8 139268993 139268993 C A FAM135B Missense_Mutation p.A103S 0.35 tolerated(0.33) benign(0.081) TCGA-D8-A147-01 8 145540056 145540056 G C DGAT1 3'UTR 0.33 TCGA-D8-A147-01 8 25240206 25240220 TTTATGAGAACATCA - DOCK5 In_Frame_Del p.Y1349_I1353del 0.30 TCGA-D8-A147-01 8 30657145 30657145 C A PPP2CB Missense_Mutation p.D77Y 0.32 tolerated(0.05) possibly_damaging(0.733) TCGA-D8-A147-01 8 6735372 6735372 G T DEFB1 Missense_Mutation p.T3N 0.12 deleterious(0.05) possibly_damaging(0.788) TCGA-D8-A147-01 8 8175701 8175701 G A SGK223 Missense_Mutation p.S1395L 0.71 unknown(0) TCGA-D8-A147-01 8 99440566 99440566 G T KCNS2 Missense_Mutation p.S120I 0.28 tolerated(0.06) possibly_damaging(0.462) TCGA-D8-A147-01 9 140729276 140729276 C T EHMT1 Silent p.C1256C 0.19 TCGA-D8-A147-01 9 84532284 84532284 A G SPATA31D5P RNA 0.28 TCGA-D8-A147-01 X 111003141 111003141 C G ALG13 Missense_Mutation p.Q1110E 0.12 deleterious(0.04) benign(0.084) TCGA-D8-A147-01 X 118215299 118215299 G A KIAA1210 Missense_Mutation p.T1708M 0.28 tolerated(1) benign(0) TCGA-D8-A147-01 X 118968767 118968767 G C UPF3B 3'UTR 0.27 TCGA-D8-A147-01 X 131233522 131233522 A T FRMD7 Nonsense_Mutation p.L60* 0.10 TCGA-D8-A147-01 X 140993500 140993500 G C MAGEC1 Missense_Mutation p.E104Q 0.19 deleterious_low_confidence(0) benign(0.403) TCGA-D8-A147-01 X 153633928 153633928 G C DNASE1L1 5'UTR 0.20 TCGA-D8-A147-01 X 18189268 18189268 C A BEND2 Missense_Mutation p.A680S 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-D8-A147-01 X 3241892 3241892 T A MXRA5 Missense_Mutation p.I612F 0.23 deleterious(0) probably_damaging(0.915) TCGA-D8-A147-01 X 48760064 48760064 C T PQBP1 Silent p.D211D 0.17 TCGA-D8-A147-01 X 49098551 49098551 C G CCDC22 Missense_Mutation p.L100V 0.08 tolerated(0.2) benign(0.384) TCGA-D8-A147-01 X 75649513 75649513 C G MAGEE1 Missense_Mutation p.P397R 0.20 deleterious(0.01) benign(0) TCGA-D8-A1J8-01 10 112581589 112581589 C - RBM20 Frame_Shift_Del p.E1073Kfs*31 0.47 TCGA-D8-A1J8-01 10 11356161 11356161 G C CELF2 Missense_Mutation p.G346R 0.52 tolerated(0.18) probably_damaging(0.942) TCGA-D8-A1J8-01 10 12071427 12071427 G A UPF2 Silent p.S154S 0.33 TCGA-D8-A1J8-01 10 12126594 12126594 C G DHTKD1 Silent p.L122L 0.36 TCGA-D8-A1J8-01 10 125804130 125804130 G A CHST15 Silent p.I284I 0.56 TCGA-D8-A1J8-01 10 135096600 135096600 C T TUBGCP2 Missense_Mutation p.M785I 0.45 tolerated(0.12) benign(0.098) TCGA-D8-A1J8-01 10 135126438 135126438 C T ZNF511 3'UTR 0.28 TCGA-D8-A1J8-01 10 135179505 135179505 C T ECHS1 Silent p.A238A 0.07 TCGA-D8-A1J8-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.33 TCGA-D8-A1J8-01 10 23287250 23287250 C T ARMC3 Missense_Mutation p.S450F 0.61 deleterious(0) probably_damaging(0.926) TCGA-D8-A1J8-01 10 24873956 24873956 G A ARHGAP21 Silent p.S1754S 0.47 TCGA-D8-A1J8-01 10 32197425 32197425 G A ARHGAP12 Missense_Mutation p.S120L 0.47 deleterious(0.01) benign(0.248) TCGA-D8-A1J8-01 10 43615122 43615122 C A RET Missense_Mutation p.L846I 0.58 tolerated(0.19) probably_damaging(0.916) TCGA-D8-A1J8-01 10 51465078 51465078 C T AGAP7 Missense_Mutation p.E460K 0.12 tolerated(0.2) possibly_damaging(0.491) TCGA-D8-A1J8-01 10 52389558 52389558 G C RP11-50E11.3 RNA 0.73 TCGA-D8-A1J8-01 10 52587953 52587953 C A A1CF Missense_Mutation p.R244I 0.56 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 10 60549085 60549085 G A BICC1 Missense_Mutation p.D222N 0.52 deleterious(0.01) benign(0.107) TCGA-D8-A1J8-01 10 61115683 61115683 G A FAM13C Missense_Mutation p.S28F 0.42 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-D8-A1J8-01 10 65140109 65140109 G A JMJD1C Missense_Mutation p.S101L 0.40 deleterious(0.03) benign(0.309) TCGA-D8-A1J8-01 10 8106094 8106094 G A GATA3 Missense_Mutation p.R306Q 0.44 deleterious(0.04) benign(0.062) TCGA-D8-A1J8-01 10 89692886 89692886 T G PTEN Missense_Mutation p.C124G 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1J8-01 10 94388635 94388635 G C KIF11 Missense_Mutation p.E430Q 0.47 deleterious(0.01) possibly_damaging(0.77) TCGA-D8-A1J8-01 10 95995871 95995871 G C PLCE1 Missense_Mutation p.R805P 0.11 deleterious(0.01) possibly_damaging(0.738) TCGA-D8-A1J8-01 11 102076658 102076658 G A YAP1 Silent p.V279V 0.57 TCGA-D8-A1J8-01 11 103004288 103004288 C G DYNC2H1 Nonsense_Mutation p.S653* 0.59 TCGA-D8-A1J8-01 11 104905104 104905104 C T CASP1 Silent p.L35L 0.55 TCGA-D8-A1J8-01 11 105881681 105881681 G C MSANTD4 5'UTR 0.56 TCGA-D8-A1J8-01 11 107219706 107219706 C G CWF19L2 Missense_Mutation p.R720T 0.47 tolerated(0.9) benign(0.004) TCGA-D8-A1J8-01 11 1093500 1093500 C T MUC2 Silent p.T1773T 0.21 TCGA-D8-A1J8-01 11 1093642 1093642 A G MUC2 Missense_Mutation p.T1821A 0.38 unknown(0) TCGA-D8-A1J8-01 11 113076329 113076329 C G NCAM1 Missense_Mutation p.S203C 0.47 deleterious(0) probably_damaging(0.938) TCGA-D8-A1J8-01 11 116706998 116706998 C G APOA1 Missense_Mutation p.M110I 0.64 tolerated(0.12) benign(0.02) TCGA-D8-A1J8-01 11 119027683 119027683 G A ABCG4 Missense_Mutation p.E343K 0.52 tolerated(0.52) benign(0.004) TCGA-D8-A1J8-01 11 119993677 119993677 A G TRIM29 Missense_Mutation p.Y474H 0.08 tolerated(0.05) benign(0.008) TCGA-D8-A1J8-01 11 122776005 122776005 G A C11orf63 Intron 0.45 TCGA-D8-A1J8-01 11 122776087 122776087 G A C11orf63 Intron 0.32 TCGA-D8-A1J8-01 11 123601554 123601554 C T ZNF202 Missense_Mutation p.E15K 0.54 tolerated(0.16) benign(0.025) TCGA-D8-A1J8-01 11 125547821 125547821 C A ACRV1 Nonsense_Mutation p.E142* 0.58 TCGA-D8-A1J8-01 11 134038496 134038496 C G NCAPD3 Missense_Mutation p.E1081Q 0.56 tolerated(0.08) possibly_damaging(0.812) TCGA-D8-A1J8-01 11 1462075 1462075 G - BRSK2 Frame_Shift_Del p.R158Gfs*2 0.42 TCGA-D8-A1J8-01 11 1955029 1955030 - AGG TNNT3 In_Frame_Ins p.E88dup 0.44 TCGA-D8-A1J8-01 11 19955610 19955610 G A NAV2 Missense_Mutation p.G630D 0.47 tolerated(0.14) benign(0.371) TCGA-D8-A1J8-01 11 30937125 30937125 C G DCDC1 Missense_Mutation p.E1196Q 0.51 tolerated(0.09) possibly_damaging(0.607) TCGA-D8-A1J8-01 11 32956671 32956671 G A QSER1 Silent p.G1160G 0.08 TCGA-D8-A1J8-01 11 33308561 33308561 G A HIPK3 Missense_Mutation p.D201N 0.60 deleterious(0) probably_damaging(0.993) TCGA-D8-A1J8-01 11 3659967 3659967 C G ART5 3'UTR 0.46 TCGA-D8-A1J8-01 11 47498973 47498973 C T CELF1 Silent p.L282L 0.12 TCGA-D8-A1J8-01 11 5011825 5011825 C T MMP26 Intron 0.51 TCGA-D8-A1J8-01 11 58919838 58919838 T C FAM111A Missense_Mutation p.S233P 0.53 tolerated(0.41) benign(0.005) TCGA-D8-A1J8-01 11 58972164 58972164 C T DTX4 Missense_Mutation p.L548F 0.51 tolerated(0.17) possibly_damaging(0.753) TCGA-D8-A1J8-01 11 59245060 59245060 C A OR4D10 Missense_Mutation p.S53Y 0.21 deleterious(0.02) possibly_damaging(0.463) TCGA-D8-A1J8-01 11 6260939 6260939 G A CNGA4 Missense_Mutation p.G64S 0.47 tolerated(0.81) benign(0) TCGA-D8-A1J8-01 11 64525980 64525980 A G PYGM Missense_Mutation p.L118P 0.19 deleterious(0) probably_damaging(0.975) TCGA-D8-A1J8-01 11 64567840 64567840 G C MAP4K2 Silent p.L250L 0.61 TCGA-D8-A1J8-01 11 6477399 6477399 C T TRIM3 Missense_Mutation p.R479H 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-D8-A1J8-01 11 64973987 64973987 G A CAPN1 Silent p.A469A 0.59 TCGA-D8-A1J8-01 11 66009006 66009006 G C PACS1 Missense_Mutation p.K846N 0.33 tolerated(0.07) probably_damaging(1) TCGA-D8-A1J8-01 11 66204351 66204351 C A MRPL11 Intron 0.51 TCGA-D8-A1J8-01 11 6650810 6650810 T C DCHS1 Splice_Site p.X1679_splice 0.63 TCGA-D8-A1J8-01 11 6661920 6661920 C T DCHS1 Missense_Mutation p.A309T 0.32 tolerated(0.7) benign(0.15) TCGA-D8-A1J8-01 11 67412606 67412606 G - ACY3 Frame_Shift_Del p.Q182Sfs*14 0.35 TCGA-D8-A1J8-01 11 67833265 67833265 G C CHKA Silent p.T371T 0.58 TCGA-D8-A1J8-01 11 77911821 77911821 G A USP35 Silent p.P388P 0.10 TCGA-D8-A1J8-01 11 8483385 8483385 G A STK33 Silent p.I175I 0.49 TCGA-D8-A1J8-01 11 94189498 94189498 G A MRE11A Missense_Mutation p.R503C 0.55 tolerated(0.08) benign(0.015) TCGA-D8-A1J8-01 12 10270989 10270989 C G CLEC7A 3'UTR 0.42 TCGA-D8-A1J8-01 12 10342675 10342675 C A TMEM52B Missense_Mutation p.P143H 0.28 deleterious(0) probably_damaging(0.982) TCGA-D8-A1J8-01 12 104517123 104517123 T C NFYB Missense_Mutation p.R104G 0.38 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 12 104517135 104517135 C T NFYB Missense_Mutation p.E100K 0.37 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 12 104682791 104682791 G C TXNRD1 Missense_Mutation p.K129N 0.14 tolerated(0.11) benign(0.002) TCGA-D8-A1J8-01 12 105764447 105764447 G A C12orf75 3'UTR 0.07 TCGA-D8-A1J8-01 12 109041113 109041113 C G CORO1C 3'UTR 0.29 TCGA-D8-A1J8-01 12 116457647 116457649 TTC - MED13L In_Frame_Del p.E252del 0.38 TCGA-D8-A1J8-01 12 118517245 118517245 C T VSIG10 Silent p.L277L 0.30 TCGA-D8-A1J8-01 12 120595748 120595748 C T GCN1L1 Missense_Mutation p.E998K 0.27 benign(0.008) TCGA-D8-A1J8-01 12 120595821 120595821 C T GCN1L1 Silent p.L973L 0.23 TCGA-D8-A1J8-01 12 122091035 122091035 C G MORN3 Missense_Mutation p.M198I 0.44 tolerated(0.23) benign(0.009) TCGA-D8-A1J8-01 12 122773065 122773065 G C CLIP1 Silent p.L1206L 0.29 TCGA-D8-A1J8-01 12 123433250 123433250 G A ABCB9 Missense_Mutation p.S325L 0.38 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 12 124192343 124192343 C T TCTN2 3'UTR 0.25 TCGA-D8-A1J8-01 12 124398954 124398954 C T DNAH10 Silent p.L3359L 0.27 TCGA-D8-A1J8-01 12 124421638 124421638 C G CCDC92 Silent p.V321V 0.33 TCGA-D8-A1J8-01 12 129028546 129028546 G A TMEM132C Missense_Mutation p.R340H 0.38 deleterious(0) benign(0.096) TCGA-D8-A1J8-01 12 129559341 129559341 G C TMEM132D Missense_Mutation p.I793M 0.31 deleterious(0.01) benign(0.135) TCGA-D8-A1J8-01 12 130648757 130648757 C T FZD10 Missense_Mutation p.R424W 0.34 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 12 130935873 130935873 G T RIMBP2 Missense_Mutation p.A107D 0.38 tolerated(0.33) benign(0.04) TCGA-D8-A1J8-01 12 132249183 132249183 G A SFSWAP Missense_Mutation p.E635K 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-D8-A1J8-01 12 132490757 132490757 T A EP400 Missense_Mutation p.N1012K 0.32 unknown(0) TCGA-D8-A1J8-01 12 132635525 132635525 G - NOC4L Splice_Site p.X303_splice 0.32 TCGA-D8-A1J8-01 12 133281387 133281387 C T PXMP2 3'UTR 0.32 TCGA-D8-A1J8-01 12 14975867 14975867 G T C12orf60 5'UTR 0.13 TCGA-D8-A1J8-01 12 15814976 15814976 C T EPS8 Missense_Mutation p.R265H 0.08 deleterious(0) benign(0.063) TCGA-D8-A1J8-01 12 21627818 21627818 G A RECQL Nonsense_Mutation p.Q438* 0.04 TCGA-D8-A1J8-01 12 21918578 21918578 C A KCNJ8 3'UTR 0.45 TCGA-D8-A1J8-01 12 26750047 26750047 G A ITPR2 Silent p.D1341D 0.31 TCGA-D8-A1J8-01 12 31135536 31135536 G A TSPAN11 Missense_Mutation p.E176K 0.39 tolerated(0.48) benign(0.311) TCGA-D8-A1J8-01 12 31944956 31944956 G A H3F3C Nonsense_Mutation p.R49* 0.35 TCGA-D8-A1J8-01 12 34176968 34176968 G C ALG10 Missense_Mutation p.W81C 0.31 deleterious(0) probably_damaging(0.95) TCGA-D8-A1J8-01 12 42854279 42854279 C A PRICKLE1 Nonsense_Mutation p.E610* 0.38 TCGA-D8-A1J8-01 12 44196241 44196241 G C TWF1 Missense_Mutation p.Q44E 0.27 tolerated(1) benign(0) TCGA-D8-A1J8-01 12 49087736 49087736 C T CCNT1 Missense_Mutation p.A421T 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-D8-A1J8-01 12 4919268 4919268 G C KCNA6 Missense_Mutation p.E21Q 0.31 tolerated(0.45) possibly_damaging(0.727) TCGA-D8-A1J8-01 12 4919634 4919634 G A KCNA6 Missense_Mutation p.E143K 0.50 tolerated(0.33) benign(0.047) TCGA-D8-A1J8-01 12 49230685 49230685 C T DDX23 Silent p.E334E 0.36 TCGA-D8-A1J8-01 12 50746535 50746535 C T FAM186A Silent p.G1360G 0.05 TCGA-D8-A1J8-01 12 50748541 50748541 C G FAM186A Missense_Mutation p.D692H 0.38 deleterious(0) probably_damaging(0.993) TCGA-D8-A1J8-01 12 50748681 50748681 C G FAM186A Missense_Mutation p.R645T 0.17 deleterious(0.01) benign(0.263) TCGA-D8-A1J8-01 12 50748703 50748703 G A FAM186A Nonsense_Mutation p.Q638* 0.23 TCGA-D8-A1J8-01 12 50748706 50748706 G A FAM186A Missense_Mutation p.H637Y 0.23 tolerated(1) benign(0.246) TCGA-D8-A1J8-01 12 50748730 50748730 C G FAM186A Missense_Mutation p.E629Q 0.27 tolerated(0.59) benign(0.044) TCGA-D8-A1J8-01 12 50749292 50749292 C T FAM186A Silent p.L441L 0.33 TCGA-D8-A1J8-01 12 52407499 52407499 G C GRASP Silent p.L161L 0.32 TCGA-D8-A1J8-01 12 52881589 52881589 C T KRT6A Missense_Mutation p.G537D 0.25 tolerated(0.05) unknown(0) TCGA-D8-A1J8-01 12 53041591 53041591 C G KRT2 Missense_Mutation p.E391Q 0.34 deleterious(0.04) probably_damaging(0.974) TCGA-D8-A1J8-01 12 53345518 53345518 G C KRT18 Missense_Mutation p.E276Q 0.42 tolerated(0.08) benign(0.367) TCGA-D8-A1J8-01 12 55356217 55356217 C T TESPA1 Missense_Mutation p.E489K 0.37 tolerated_low_confidence(0.12) possibly_damaging(0.486) TCGA-D8-A1J8-01 12 56511263 56511263 C G RPL41 Intron 0.29 TCGA-D8-A1J8-01 12 56547854 56547854 C T MYL6B Missense_Mutation p.P51L 0.35 tolerated(0.05) benign(0.005) TCGA-D8-A1J8-01 12 56619427 56619427 G T NABP2 Missense_Mutation p.G80C 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 12 56816665 56816665 C G TIMELESS Missense_Mutation p.E802Q 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1J8-01 12 57593676 57593677 - A LRP1 Frame_Shift_Ins p.V3296Gfs*42 0.21 TCGA-D8-A1J8-01 12 57594568 57594568 T C LRP1 Missense_Mutation p.C3399R 0.21 probably_damaging(0.999) TCGA-D8-A1J8-01 12 58007205 58007205 G C ARHGEF25 Intron 0.26 TCGA-D8-A1J8-01 12 63963127 63963127 G C DPY19L2 Missense_Mutation p.A668G 0.32 deleterious(0.01) possibly_damaging(0.593) TCGA-D8-A1J8-01 12 64588286 64588286 G A C12orf66 Missense_Mutation p.T225M 0.10 deleterious(0.01) probably_damaging(0.939) TCGA-D8-A1J8-01 12 6575246 6575246 C T VAMP1 Intron 0.45 TCGA-D8-A1J8-01 12 6658963 6658963 C T IFFO1 Missense_Mutation p.A344T 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-D8-A1J8-01 12 6672330 6672330 C T NOP2 Missense_Mutation p.E332K 0.38 deleterious(0) possibly_damaging(0.858) TCGA-D8-A1J8-01 12 6748131 6748131 G A ACRBP Missense_Mutation p.R500C 0.20 deleterious(0.02) possibly_damaging(0.628) TCGA-D8-A1J8-01 12 69042554 69042554 C G RAP1B Missense_Mutation p.S17C 0.29 deleterious(0.01) probably_damaging(1) TCGA-D8-A1J8-01 12 6955960 6955960 C T CDCA3 3'Flank 0.24 TCGA-D8-A1J8-01 12 70949054 70949054 C T PTPRB Missense_Mutation p.E1677K 0.08 tolerated(0.9) benign(0.005) TCGA-D8-A1J8-01 12 72080374 72080374 G A TMEM19 5'UTR 0.37 TCGA-D8-A1J8-01 12 72090223 72090223 C T TMEM19 Silent p.V84V 0.29 TCGA-D8-A1J8-01 12 72091271 72091271 A G TMEM19 Silent p.K198K 0.39 TCGA-D8-A1J8-01 12 7343048 7343048 C A PEX5 Silent p.T25T 0.49 TCGA-D8-A1J8-01 12 75436094 75436097 TAAG - KCNC2 3'UTR 0.20 TCGA-D8-A1J8-01 12 8234951 8234951 C T NECAP1 Missense_Mutation p.P23S 0.50 deleterious(0.01) probably_damaging(0.92) TCGA-D8-A1J8-01 12 88566490 88566490 A G TMTC3 Silent p.V389V 0.31 TCGA-D8-A1J8-01 12 91552243 91552243 C G DCN Missense_Mutation p.G123A 0.31 tolerated(0.15) benign(0.009) TCGA-D8-A1J8-01 12 94634314 94634314 C G PLXNC1 Nonsense_Mutation p.S725* 0.36 TCGA-D8-A1J8-01 13 103421738 103421738 G A TEX30 Missense_Mutation p.H57Y 0.39 tolerated(0.07) benign(0.006) TCGA-D8-A1J8-01 13 103443621 103443621 C T KDELC1 Missense_Mutation p.E278K 0.55 deleterious(0) probably_damaging(0.957) TCGA-D8-A1J8-01 13 113978764 113978764 C T GRTP1 3'UTR 0.40 TCGA-D8-A1J8-01 13 113980339 113980339 C T GRTP1 Silent p.A210A 0.47 TCGA-D8-A1J8-01 13 114152795 114152795 G C TMCO3 Missense_Mutation p.E195Q 0.07 tolerated(0.09) possibly_damaging(0.893) TCGA-D8-A1J8-01 13 114541067 114541067 G C GAS6 Silent p.L188L 0.33 TCGA-D8-A1J8-01 13 21395842 21395842 C A XPO4 Splice_Site p.X391_splice 0.46 TCGA-D8-A1J8-01 13 23909883 23909883 G A SACS Missense_Mutation p.S2711L 0.18 probably_damaging(0.992) TCGA-D8-A1J8-01 13 24465396 24465396 G C C1QTNF9B 3'UTR 0.57 TCGA-D8-A1J8-01 13 25033251 25033251 C G PARP4 Missense_Mutation p.L785F 0.58 deleterious(0) possibly_damaging(0.688) TCGA-D8-A1J8-01 13 27333511 27333511 T A GPR12 Missense_Mutation p.R152W 0.43 deleterious(0) probably_damaging(0.993) TCGA-D8-A1J8-01 13 34399976 34399976 T C RFC3 Missense_Mutation p.V115A 0.06 deleterious(0.02) benign(0.053) TCGA-D8-A1J8-01 13 37269304 37269304 C T SERTM1 Missense_Mutation p.S30L 0.46 tolerated_low_confidence(0.13) benign(0.001) TCGA-D8-A1J8-01 13 79175724 79175724 G A POU4F1 Silent p.I362I 0.48 TCGA-D8-A1J8-01 13 95271495 95271495 C T GPR180 Silent p.G199G 0.49 TCGA-D8-A1J8-01 13 99508157 99508157 C A DOCK9 Missense_Mutation p.D1276Y 0.39 deleterious(0) possibly_damaging(0.612) TCGA-D8-A1J8-01 14 100118811 100118811 C G HHIPL1 Nonsense_Mutation p.S169* 0.26 TCGA-D8-A1J8-01 14 102500780 102500780 G A DYNC1H1 Missense_Mutation p.R3582Q 0.32 probably_damaging(0.918) TCGA-D8-A1J8-01 14 105169695 105169695 G A INF2 Missense_Mutation p.V191M 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1J8-01 14 105410897 105410897 C T AHNAK2 Missense_Mutation p.V3631M 0.32 possibly_damaging(0.818) TCGA-D8-A1J8-01 14 105707730 105707730 C T BRF1 Missense_Mutation p.R189H 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 14 21680074 21680074 C T HNRNPC Missense_Mutation p.D191N 0.30 tolerated(0.15) benign(0.029) TCGA-D8-A1J8-01 14 21859175 21859176 - T CHD8 Frame_Shift_Ins p.N2371Kfs*2 0.26 TCGA-D8-A1J8-01 14 21869200 21869200 G A CHD8 Nonsense_Mutation p.R1402* 0.24 TCGA-D8-A1J8-01 14 21961177 21961177 C G TOX4 Missense_Mutation p.P468A 0.36 deleterious(0) probably_damaging(0.956) TCGA-D8-A1J8-01 14 22205011 22205011 C G TRAV4 Missense_Mutation p.I25M 0.43 tolerated(0.13) benign(0.316) TCGA-D8-A1J8-01 14 22363137 22363137 G A TRAV8-4 Missense_Mutation p.E90K 0.33 tolerated(0.15) benign(0.037) TCGA-D8-A1J8-01 14 22508912 22508912 G C TRAV20 Missense_Mutation p.E2Q 0.41 tolerated(0.09) possibly_damaging(0.487) TCGA-D8-A1J8-01 14 23444075 23444075 G T AJUBA Silent p.A465A 0.10 TCGA-D8-A1J8-01 14 23559272 23559272 C T ACIN1 Missense_Mutation p.E177K 0.33 probably_damaging(0.98) TCGA-D8-A1J8-01 14 23887196 23887196 C G MYH7 Intron 0.21 TCGA-D8-A1J8-01 14 24026073 24026073 G A THTPA Missense_Mutation p.R36Q 0.43 tolerated(0.12) benign(0.127) TCGA-D8-A1J8-01 14 24026219 24026219 G A THTPA Missense_Mutation p.E85K 0.32 tolerated(0.17) benign(0.063) TCGA-D8-A1J8-01 14 24041029 24041029 G A JPH4 Missense_Mutation p.P418S 0.18 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 14 24788637 24788637 G T ADCY4 Silent p.L913L 0.36 TCGA-D8-A1J8-01 14 37145400 37145400 C G PAX9 Intron 0.36 TCGA-D8-A1J8-01 14 45565402 45565402 C T PRPF39 Missense_Mutation p.R141W 0.20 deleterious(0) probably_damaging(0.949) TCGA-D8-A1J8-01 14 45585346 45585346 C G FKBP3 3'UTR 0.41 TCGA-D8-A1J8-01 14 51239016 51239016 C T NIN Intron 0.24 TCGA-D8-A1J8-01 14 58825910 58825911 - A ARID4A Frame_Shift_Ins p.Q641Tfs*6 0.23 TCGA-D8-A1J8-01 14 59789941 59789941 C G DAAM1 Missense_Mutation p.Q258E 0.41 deleterious(0) unknown(0) TCGA-D8-A1J8-01 14 59792700 59792700 C T DAAM1 Missense_Mutation p.A360V 0.35 tolerated(0.07) unknown(0) TCGA-D8-A1J8-01 14 62187188 62187188 C T HIF1A Missense_Mutation p.H66Y 0.38 deleterious(0.02) benign(0.016) TCGA-D8-A1J8-01 14 64619358 64619358 G A SYNE2 Missense_Mutation p.G5239E 0.43 probably_damaging(0.941) TCGA-D8-A1J8-01 14 64746795 64746795 G A ESR2 Missense_Mutation p.H147Y 0.34 deleterious(0) possibly_damaging(0.616) TCGA-D8-A1J8-01 14 74422535 74422535 A T COQ6 Missense_Mutation p.I129L 0.26 deleterious(0) possibly_damaging(0.817) TCGA-D8-A1J8-01 14 75514822 75514822 G C MLH3 Missense_Mutation p.Q513E 0.33 tolerated(0.45) benign(0.011) TCGA-D8-A1J8-01 14 75898905 75898905 G A JDP2 5'UTR 0.06 TCGA-D8-A1J8-01 14 88904306 88904306 C T SPATA7 Missense_Mutation p.S447L 0.31 tolerated(0.16) benign(0.059) TCGA-D8-A1J8-01 14 92621595 92621596 - A CPSF2 Frame_Shift_Ins p.S460Vfs*13 0.09 TCGA-D8-A1J8-01 14 94696995 94696995 C T PPP4R4 Silent p.D122D 0.09 TCGA-D8-A1J8-01 14 94909049 94909049 G C SERPINA11 Nonsense_Mutation p.S388* 0.32 TCGA-D8-A1J8-01 14 96864475 96864475 G A AK7 Missense_Mutation p.D57N 0.07 deleterious(0.05) benign(0.347) TCGA-D8-A1J8-01 15 101555570 101555570 C T LRRK1 Silent p.F524F 0.45 TCGA-D8-A1J8-01 15 22926026 22926026 C T CYFIP1 Silent p.I56I 0.49 TCGA-D8-A1J8-01 15 28375390 28375390 G A HERC2 Missense_Mutation p.R4241W 0.50 probably_damaging(0.995) TCGA-D8-A1J8-01 15 29397633 29397633 G T APBA2 Nonsense_Mutation p.E526* 0.67 TCGA-D8-A1J8-01 15 30020163 30020163 G A TJP1 Missense_Mutation p.T693I 0.07 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 15 31229382 31229382 G A FAN1 Missense_Mutation p.E993K 0.65 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 15 35274694 35274694 A G ZNF770 Silent p.C314C 0.33 TCGA-D8-A1J8-01 15 37109463 37109463 G A CSNK1A1P1 RNA 0.06 TCGA-D8-A1J8-01 15 40660101 40660101 C T DISP2 Silent p.S596S 0.42 TCGA-D8-A1J8-01 15 41989020 41989020 G A MGA Silent p.Q604Q 0.60 TCGA-D8-A1J8-01 15 42168448 42168448 C T SPTBN5 Nonsense_Mutation p.W1329* 0.11 TCGA-D8-A1J8-01 15 42743140 42743140 C T ZNF106 Missense_Mutation p.D421N 0.07 tolerated(0.2) benign(0.008) TCGA-D8-A1J8-01 15 43102874 43102874 C T TTBK2 Missense_Mutation p.E254K 0.52 deleterious(0) probably_damaging(0.951) TCGA-D8-A1J8-01 15 43584976 43584976 G C TGM7 Missense_Mutation p.Q124E 0.49 deleterious(0.01) benign(0.257) TCGA-D8-A1J8-01 15 48056840 48056840 G A SEMA6D Missense_Mutation p.G368D 0.22 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 15 49531449 49531449 T A GALK2 Missense_Mutation p.M130K 0.32 deleterious(0) possibly_damaging(0.636) TCGA-D8-A1J8-01 15 51242111 51242111 A G AP4E1 Missense_Mutation p.N469D 0.10 tolerated(0.12) benign(0.042) TCGA-D8-A1J8-01 15 56209009 56209009 C T NEDD4 Silent p.L7L 0.43 TCGA-D8-A1J8-01 15 62948251 62948251 G A TLN2 Missense_Mutation p.R209K 0.51 tolerated(0.1) benign(0.059) TCGA-D8-A1J8-01 15 63954111 63954111 C T HERC1 Missense_Mutation p.R3004H 0.09 benign(0.006) TCGA-D8-A1J8-01 15 67713899 67713899 G A IQCH Missense_Mutation p.S830N 0.09 tolerated(0.57) benign(0.01) TCGA-D8-A1J8-01 15 67938633 67938633 A G MAP2K5 Missense_Mutation p.Y217C 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-D8-A1J8-01 15 75664219 75664219 G A SIN3A 3'UTR 0.46 TCGA-D8-A1J8-01 15 85341183 85341183 A G ZNF592 Missense_Mutation p.K828R 0.52 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 15 86702163 86702163 G A AGBL1 Splice_Site p.X86_splice 0.56 TCGA-D8-A1J8-01 16 11063041 11063041 G A CLEC16A Missense_Mutation p.V123I 0.34 tolerated(0.17) benign(0.416) TCGA-D8-A1J8-01 16 11792007 11792007 C T TXNDC11 Missense_Mutation p.A361T 0.21 tolerated(0.16) benign(0.172) TCGA-D8-A1J8-01 16 11868840 11868840 C T ZC3H7A Silent p.E205E 0.25 TCGA-D8-A1J8-01 16 14342897 14342897 T C MKL2 Missense_Mutation p.F738L 0.07 tolerated(0.7) benign(0.187) TCGA-D8-A1J8-01 16 15813521 15813521 C T MYH11 Missense_Mutation p.R1675K 0.30 benign(0.257) TCGA-D8-A1J8-01 16 18573201 18573201 G C NOMO2 Missense_Mutation p.I54M 0.30 deleterious(0) possibly_damaging(0.644) TCGA-D8-A1J8-01 16 19195030 19195030 T C SYT17 Missense_Mutation p.V171A 0.37 tolerated(0.37) benign(0.006) TCGA-D8-A1J8-01 16 23634364 23634364 C T PALB2 Silent p.K974K 0.36 TCGA-D8-A1J8-01 16 2510820 2510820 G A C16orf59 Missense_Mutation p.C67Y 0.26 tolerated(0.08) possibly_damaging(0.748) TCGA-D8-A1J8-01 16 25258142 25258142 T C ZKSCAN2 Missense_Mutation p.S459G 0.48 tolerated(0.79) benign(0.002) TCGA-D8-A1J8-01 16 27777778 27777778 G A KIAA0556 Missense_Mutation p.E1320K 0.14 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 16 28885049 28885049 C A SH2B1 Missense_Mutation p.P727T 0.30 tolerated_low_confidence(0.22) benign(0) TCGA-D8-A1J8-01 16 28915665 28915665 C T ATP2A1 3'UTR 0.38 TCGA-D8-A1J8-01 16 29819914 29819914 G A MAZ Silent p.T377T 0.46 TCGA-D8-A1J8-01 16 31477928 31477928 C A ARMC5 Missense_Mutation p.F842L 0.27 deleterious(0.01) possibly_damaging(0.832) TCGA-D8-A1J8-01 16 31499002 31499002 C T SLC5A2 Silent p.P269P 0.78 TCGA-D8-A1J8-01 16 3580599 3580599 G T CLUAP1 Missense_Mutation p.E320D 0.28 tolerated(0.12) benign(0.02) TCGA-D8-A1J8-01 16 3613884 3613884 C T NLRC3 Missense_Mutation p.A399T 0.36 tolerated(0.55) benign(0.002) TCGA-D8-A1J8-01 16 3658860 3658860 C T SLX4 Missense_Mutation p.E36K 0.31 deleterious(0.02) benign(0.269) TCGA-D8-A1J8-01 16 49660157 49660157 T A ZNF423 Silent p.T1167T 0.53 TCGA-D8-A1J8-01 16 53860226 53860226 G C FTO Missense_Mutation p.D192H 0.48 tolerated(0.07) probably_damaging(0.909) TCGA-D8-A1J8-01 16 56660528 56660528 G A MT1E Intron 0.53 TCGA-D8-A1J8-01 16 56670832 56670832 G C MT1M 3'Flank 0.55 TCGA-D8-A1J8-01 16 57238485 57238485 G A RSPRY1 5'UTR 0.57 TCGA-D8-A1J8-01 16 57689382 57689382 G A GPR56 Silent p.R280R 0.67 TCGA-D8-A1J8-01 16 58570976 58570976 G C CNOT1 Missense_Mutation p.L1855V 0.55 deleterious(0) benign(0.066) TCGA-D8-A1J8-01 16 58576209 58576209 C T CNOT1 Missense_Mutation p.E1536K 0.49 deleterious(0) benign(0.336) TCGA-D8-A1J8-01 16 67289057 67289057 C T SLC9A5 Silent p.G208G 0.24 TCGA-D8-A1J8-01 16 67327655 67327655 G T KCTD19 Silent p.L670L 0.55 TCGA-D8-A1J8-01 16 69704148 69704148 C G NFAT5 Missense_Mutation p.S505C 0.45 probably_damaging(0.994) TCGA-D8-A1J8-01 16 69874100 69874100 A T WWP2 Missense_Mutation p.T138S 0.65 tolerated(0.63) benign(0.039) TCGA-D8-A1J8-01 16 70688451 70688451 C G IL34 Missense_Mutation p.I13M 0.60 deleterious(0) probably_damaging(0.922) TCGA-D8-A1J8-01 16 70884495 70884495 G A HYDIN Silent p.C4169C 0.44 TCGA-D8-A1J8-01 16 708912 708912 C T WDR90 Missense_Mutation p.S971L 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-D8-A1J8-01 16 71026093 71026093 T G HYDIN Missense_Mutation p.K1222T 0.65 possibly_damaging(0.719) TCGA-D8-A1J8-01 16 80666970 80666970 G C CDYL2 Missense_Mutation p.F260L 0.65 deleterious(0) probably_damaging(0.982) TCGA-D8-A1J8-01 16 84474522 84474522 C A ATP2C2 Silent p.V423V 0.49 TCGA-D8-A1J8-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.39 TCGA-D8-A1J8-01 17 1554841 1554841 C T PRPF8 Missense_Mutation p.E2173K 0.51 tolerated(0.07) possibly_damaging(0.871) TCGA-D8-A1J8-01 17 26727696 26727696 G C SLC46A1 Missense_Mutation p.L418V 0.13 tolerated(0.13) possibly_damaging(0.622) TCGA-D8-A1J8-01 17 28545907 28545907 C T SLC6A4 Missense_Mutation p.G129E 0.17 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 17 29483062 29483062 A - NF1 Frame_Shift_Del p.E41Dfs*3 0.20 TCGA-D8-A1J8-01 17 33259455 33259455 C T CCT6B Silent p.K426K 0.56 TCGA-D8-A1J8-01 17 36486813 36486813 G A GPR179 Missense_Mutation p.A880V 0.50 tolerated(0.41) benign(0.012) TCGA-D8-A1J8-01 17 3912942 3912942 G T ZZEF1 Missense_Mutation p.R2897S 0.42 deleterious(0.04) probably_damaging(0.952) TCGA-D8-A1J8-01 17 4053207 4053207 C T CYB5D2 Silent p.F91F 0.15 TCGA-D8-A1J8-01 17 40647143 40647143 C T ATP6V0A1 Missense_Mutation p.S476F 0.39 deleterious(0) possibly_damaging(0.892) TCGA-D8-A1J8-01 17 41139393 41139393 G A RUNDC1 Missense_Mutation p.D207N 0.59 deleterious(0.02) benign(0.24) TCGA-D8-A1J8-01 17 42284729 42284729 C G UBTF Missense_Mutation p.E726Q 0.50 tolerated_low_confidence(0.17) unknown(0) TCGA-D8-A1J8-01 17 45214547 45214547 G A CDC27 Silent p.I634I 0.22 TCGA-D8-A1J8-01 17 45734337 45734337 C A KPNB1 Missense_Mutation p.Q132K 0.59 tolerated(0.98) benign(0.001) TCGA-D8-A1J8-01 17 53158418 53158418 A G STXBP4 Missense_Mutation p.R455G 0.07 tolerated(0.07) benign(0.013) TCGA-D8-A1J8-01 17 5436238 5436238 T A NLRP1 Missense_Mutation p.D1067V 0.13 deleterious(0) possibly_damaging(0.759) TCGA-D8-A1J8-01 17 60033733 60033733 G A MED13 Missense_Mutation p.R1864C 0.17 deleterious(0) probably_damaging(0.995) TCGA-D8-A1J8-01 17 60050231 60050231 G A MED13 Missense_Mutation p.S1275L 0.44 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 17 61824031 61824031 A - CCDC47 3'UTR 0.44 TCGA-D8-A1J8-01 17 62758716 62758716 C T hsa-mir-6080 RNA 0.12 TCGA-D8-A1J8-01 17 65341877 65341877 C G PSMD12 Missense_Mutation p.E298Q 0.51 tolerated(0.43) possibly_damaging(0.529) TCGA-D8-A1J8-01 17 66511465 66511465 G A PRKAR1A Intron 0.38 TCGA-D8-A1J8-01 17 7140706 7140706 C G PHF23 Missense_Mutation p.E53Q 0.44 tolerated(0.05) benign(0.055) TCGA-D8-A1J8-01 17 71431698 71431698 G A SDK2 Silent p.D362D 0.54 TCGA-D8-A1J8-01 17 72346876 72346876 C G KIF19 Silent p.L473L 0.56 TCGA-D8-A1J8-01 17 73517571 73517571 G C TSEN54 Missense_Mutation p.K201N 0.49 deleterious(0) possibly_damaging(0.838) TCGA-D8-A1J8-01 17 73637040 73637040 C G SMIM5 3'UTR 0.45 TCGA-D8-A1J8-01 17 73818686 73818686 G A UNK Missense_Mutation p.E656K 0.50 deleterious(0.03) benign(0.164) TCGA-D8-A1J8-01 17 73917561 73917561 G A FBF1 Missense_Mutation p.S521L 0.60 tolerated(0.17) benign(0.001) TCGA-D8-A1J8-01 17 78931483 78931483 G A RPTOR Missense_Mutation p.V1144M 0.37 tolerated(0.06) benign(0.295) TCGA-D8-A1J8-01 18 22057345 22057345 C T HRH4 Missense_Mutation p.S331L 0.53 tolerated(0.23) benign(0.02) TCGA-D8-A1J8-01 18 28923779 28923779 T - DSG1 Intron 0.50 TCGA-D8-A1J8-01 18 29848284 29848284 G - GAREM Frame_Shift_Del p.R728Gfs*5 0.42 TCGA-D8-A1J8-01 18 3164315 3164315 C T MYOM1 Missense_Mutation p.E488K 0.51 tolerated(0.41) benign(0.314) TCGA-D8-A1J8-01 18 33795621 33795621 C T MOCOS Missense_Mutation p.S493L 0.66 tolerated(0.24) benign(0.006) TCGA-D8-A1J8-01 18 33848654 33848663 ATTTTTAGCA TTTTTAGCATACAT MOCOS 3'UTR 0.42 TCGA-D8-A1J8-01 18 40503615 40503615 G A RIT2 Silent p.L116L 0.45 TCGA-D8-A1J8-01 18 42532585 42532585 C G SETBP1 Missense_Mutation p.Q1094E 0.53 deleterious(0.01) probably_damaging(0.979) TCGA-D8-A1J8-01 18 45567085 45567085 C - ZBTB7C Frame_Shift_Del p.D132Tfs*90 0.39 TCGA-D8-A1J8-01 18 46163043 46163043 C - CTIF Frame_Shift_Del p.P82Hfs*77 0.50 TCGA-D8-A1J8-01 18 48473521 48473521 A T ME2 Missense_Mutation p.E574D 0.48 tolerated(0.15) benign(0.004) TCGA-D8-A1J8-01 18 55103687 55103687 C T ONECUT2 Missense_Mutation p.P247S 0.38 tolerated(0.47) benign(0.001) TCGA-D8-A1J8-01 18 55342222 55342222 C T ATP8B1 Missense_Mutation p.E555K 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 18 61305175 61305175 C T SERPINB4 Missense_Mutation p.M317I 0.49 tolerated(0.2) benign(0.271) TCGA-D8-A1J8-01 18 61325785 61325785 C T SERPINB3 Missense_Mutation p.R144Q 0.48 tolerated(0.09) benign(0.381) TCGA-D8-A1J8-01 18 66354978 66354978 G A TMX3 Missense_Mutation p.S221L 0.57 tolerated(0.05) benign(0.012) TCGA-D8-A1J8-01 18 66513628 66513628 G A CCDC102B Silent p.L302L 0.10 TCGA-D8-A1J8-01 18 77893955 77893955 G A ADNP2 Missense_Mutation p.C220Y 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-D8-A1J8-01 18 7888192 7888192 C T PTPRM Silent p.H95H 0.53 TCGA-D8-A1J8-01 19 10506149 10506149 G A CDC37 Missense_Mutation p.T150I 0.04 tolerated(0.07) possibly_damaging(0.891) TCGA-D8-A1J8-01 19 10506661 10506661 C T CDC37 Silent p.K107K 0.07 TCGA-D8-A1J8-01 19 10506778 10506778 C T CDC37 Silent p.L68L 0.12 TCGA-D8-A1J8-01 19 10824022 10824022 G T QTRT1 3'UTR 0.50 TCGA-D8-A1J8-01 19 12383179 12383179 G C ZNF44 3'UTR 0.27 TCGA-D8-A1J8-01 19 12502762 12502762 G A ZNF799 Silent p.F150F 0.27 TCGA-D8-A1J8-01 19 12881762 12881762 C T HOOK2 Missense_Mutation p.E296K 0.35 deleterious(0) probably_damaging(0.971) TCGA-D8-A1J8-01 19 14023182 14023182 G C CC2D1A Missense_Mutation p.M81I 0.30 deleterious(0) probably_damaging(0.989) TCGA-D8-A1J8-01 19 14023186 14023186 G A CC2D1A Missense_Mutation p.D83N 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 19 15083567 15083567 G A SLC1A6 Silent p.F52F 0.27 TCGA-D8-A1J8-01 19 16601239 16601239 G C CALR3 Silent p.V112V 0.40 TCGA-D8-A1J8-01 19 16614048 16614048 C T C19orf44 Missense_Mutation p.T311M 0.07 tolerated(0.09) benign(0.161) TCGA-D8-A1J8-01 19 17487862 17487862 G A PLVAP Missense_Mutation p.A79V 0.31 deleterious(0) probably_damaging(0.988) TCGA-D8-A1J8-01 19 17844161 17844161 A G MAP1S Missense_Mutation p.Q983R 0.44 tolerated(0.88) benign(0.009) TCGA-D8-A1J8-01 19 18541650 18541650 G C SSBP4 Splice_Site p.X94_splice 0.75 TCGA-D8-A1J8-01 19 18541655 18541655 C T SSBP4 Missense_Mutation p.A95V 0.67 tolerated(0.07) benign(0.142) TCGA-D8-A1J8-01 19 18652634 18652634 C G FKBP8 Silent p.L49L 0.31 TCGA-D8-A1J8-01 19 18652687 18652687 C G FKBP8 Missense_Mutation p.D32H 0.30 deleterious_low_confidence(0) benign(0.378) TCGA-D8-A1J8-01 19 19767527 19767527 C T ATP13A1 Missense_Mutation p.R342Q 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1J8-01 19 20735324 20735324 T - ZNF737 Frame_Shift_Del p.K61Nfs*3 0.08 TCGA-D8-A1J8-01 19 22157493 22157493 T - ZNF208 Frame_Shift_Del p.I115Lfs*23 0.21 TCGA-D8-A1J8-01 19 22575731 22575731 A T ZNF98 Missense_Mutation p.N102K 0.26 deleterious(0.01) benign(0.109) TCGA-D8-A1J8-01 19 34941194 34941194 C A UBA2 Missense_Mutation p.L266M 0.31 deleterious(0) probably_damaging(0.946) TCGA-D8-A1J8-01 19 35827001 35827001 C G CD22 Missense_Mutation p.L159V 0.07 tolerated(0.37) possibly_damaging(0.498) TCGA-D8-A1J8-01 19 36515355 36515355 G C CLIP3 Silent p.L287L 0.38 TCGA-D8-A1J8-01 19 37118075 37118075 C T ZNF382 Missense_Mutation p.H426Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 19 37382414 37382414 C T ZNF829 Missense_Mutation p.E508K 0.47 deleterious(0.04) benign(0.269) TCGA-D8-A1J8-01 19 37488357 37488357 G A ZNF568 Silent p.E524E 0.51 TCGA-D8-A1J8-01 19 37853022 37853022 G C HKR1 Missense_Mutation p.E109Q 0.41 deleterious(0.03) benign(0.047) TCGA-D8-A1J8-01 19 38077710 38077710 G C ZNF571 Intron 0.35 TCGA-D8-A1J8-01 19 38377679 38377679 G C WDR87 Nonsense_Mutation p.S2172* 0.34 TCGA-D8-A1J8-01 19 3852414 3852414 C G ZFR2 Intron 0.32 TCGA-D8-A1J8-01 19 38853115 38853115 G A CATSPERG Missense_Mutation p.E753K 0.18 tolerated(0.55) possibly_damaging(0.502) TCGA-D8-A1J8-01 19 38885110 38885110 C G SPRED3 Intron 0.26 TCGA-D8-A1J8-01 19 39125819 39125819 G A EIF3K Intron 0.37 TCGA-D8-A1J8-01 19 39913648 39913648 G A PLEKHG2 Missense_Mutation p.E652K 0.27 tolerated_low_confidence(0.81) benign(0.003) TCGA-D8-A1J8-01 19 4028789 4028789 C T PIAS4 Silent p.L248L 0.35 TCGA-D8-A1J8-01 19 40581230 40581230 G A ZNF780A Silent p.L374L 0.34 TCGA-D8-A1J8-01 19 40740816 40740816 G C AKT2 Intron 0.33 TCGA-D8-A1J8-01 19 40900900 40900900 C T PRX Missense_Mutation p.G1120E 0.45 tolerated(0.48) probably_damaging(0.969) TCGA-D8-A1J8-01 19 41019290 41019290 A G SPTBN4 Missense_Mutation p.E865G 0.30 deleterious(0) benign(0.093) TCGA-D8-A1J8-01 19 41271081 41271081 C - SNRPA 3'UTR 0.16 TCGA-D8-A1J8-01 19 42126606 42126606 G T CEACAM4 Missense_Mutation p.P202H 0.37 tolerated(0.21) benign(0.109) TCGA-D8-A1J8-01 19 42409363 42409363 G A ARHGEF1 Silent p.L777L 0.40 TCGA-D8-A1J8-01 19 43585326 43585326 G A PSG2 Missense_Mutation p.S46F 0.59 deleterious(0) probably_damaging(0.99) TCGA-D8-A1J8-01 19 438761 438761 A G SHC2 Missense_Mutation p.I226T 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 19 44011000 44011000 G C ETHE1 3'UTR 0.11 TCGA-D8-A1J8-01 19 44981684 44981684 G A ZNF180 Silent p.S338S 0.08 TCGA-D8-A1J8-01 19 47192823 47192823 C T PRKD2 Missense_Mutation p.E648K 0.36 deleterious(0) benign(0.138) TCGA-D8-A1J8-01 19 47763960 47763960 C T CCDC9 Missense_Mutation p.S109L 0.27 deleterious(0.03) benign(0.266) TCGA-D8-A1J8-01 19 49123760 49123760 G A SPHK2 5'UTR 0.37 TCGA-D8-A1J8-01 19 49249107 49249107 G A IZUMO1 Missense_Mutation p.H4Y 0.35 tolerated(1) benign(0.036) TCGA-D8-A1J8-01 19 49547273 49547273 G A CGB5 5'UTR 0.40 TCGA-D8-A1J8-01 19 49994349 49994349 C T RPL13A Missense_Mutation p.T132I 0.33 tolerated(0.08) benign(0.016) TCGA-D8-A1J8-01 19 50215134 50215134 G A CPT1C Missense_Mutation p.M645I 0.27 deleterious(0.01) benign(0.159) TCGA-D8-A1J8-01 19 50367244 50367244 C G PNKP Missense_Mutation p.E241Q 0.32 tolerated(0.37) benign(0.099) TCGA-D8-A1J8-01 19 50475228 50475228 C - VRK3 3'Flank 0.39 TCGA-D8-A1J8-01 19 50954182 50954182 C T MYBPC2 Silent p.L523L 0.22 TCGA-D8-A1J8-01 19 51742961 51742961 C T CD33 3'UTR 0.37 TCGA-D8-A1J8-01 19 52618995 52618995 G A ZNF616 Silent p.F474F 0.22 TCGA-D8-A1J8-01 19 53844506 53844506 C G ZNF845 5'UTR 0.32 TCGA-D8-A1J8-01 19 53856140 53856140 C G ZNF845 Missense_Mutation p.L738V 0.34 deleterious(0.02) benign(0.004) TCGA-D8-A1J8-01 19 53856158 53856158 G A ZNF845 Missense_Mutation p.E744K 0.37 deleterious(0.01) probably_damaging(0.985) TCGA-D8-A1J8-01 19 53912082 53912082 C G ZNF765 Missense_Mutation p.T425S 0.34 tolerated(0.9) benign(0.002) TCGA-D8-A1J8-01 19 54647843 54647843 G A CNOT3 Silent p.E120E 0.25 TCGA-D8-A1J8-01 19 54663378 54663378 C G LENG1 Missense_Mutation p.R19P 0.43 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 19 54677970 54677970 T C MBOAT7 Missense_Mutation p.D396G 0.33 deleterious(0.03) benign(0.414) TCGA-D8-A1J8-01 19 55144634 55144634 C T LILRB1 Nonsense_Mutation p.Q376* 0.34 TCGA-D8-A1J8-01 19 55543882 55543882 G A GP6 Missense_Mutation p.A20V 0.35 tolerated_low_confidence(0.4) benign(0.082) TCGA-D8-A1J8-01 19 56223333 56223333 C T NLRP9 Silent p.L892L 0.44 TCGA-D8-A1J8-01 19 56736086 56736086 C G ZSCAN5A Missense_Mutation p.Q110H 0.20 deleterious(0.02) possibly_damaging(0.83) TCGA-D8-A1J8-01 19 57065152 57065152 C G ZFP28 Missense_Mutation p.S333C 0.09 deleterious(0.04) benign(0.009) TCGA-D8-A1J8-01 19 58579047 58579047 C T ZNF135 Nonsense_Mutation p.Q423* 0.42 TCGA-D8-A1J8-01 19 6495394 6495394 C T TUBB4A Silent p.T372T 0.32 TCGA-D8-A1J8-01 19 8174578 8174578 C T FBN3 Missense_Mutation p.G1465S 0.38 deleterious(0.01) possibly_damaging(0.82) TCGA-D8-A1J8-01 19 9046939 9046939 C T MUC16 Silent p.L11564L 0.36 TCGA-D8-A1J8-01 1 100634050 100634050 G A LRRC39 Missense_Mutation p.T8I 0.05 tolerated(0.3) benign(0.005) TCGA-D8-A1J8-01 1 109301146 109301146 C G STXBP3 Missense_Mutation p.F91L 0.60 tolerated(1) benign(0.019) TCGA-D8-A1J8-01 1 110255996 110255996 C T GSTM5 Intron 0.09 TCGA-D8-A1J8-01 1 110260079 110260079 G A GSTM5 3'UTR 0.18 TCGA-D8-A1J8-01 1 11210203 11210203 G A MTOR Missense_Mutation p.A1517V 0.30 deleterious(0.03) probably_damaging(0.95) TCGA-D8-A1J8-01 1 113000008 113000008 G C CTTNBP2NL Missense_Mutation p.E632Q 0.68 deleterious(0.02) possibly_damaging(0.512) TCGA-D8-A1J8-01 1 120286790 120286790 C G PHGDH 3'UTR 0.41 TCGA-D8-A1J8-01 1 120462993 120462993 C T NOTCH2 Missense_Mutation p.E1780K 0.12 tolerated(0.91) benign(0.034) TCGA-D8-A1J8-01 1 147400661 147400661 G C GPR89B Silent p.L4L 0.16 TCGA-D8-A1J8-01 1 148009477 148009477 G C NBPF14 Silent p.V616V 0.07 TCGA-D8-A1J8-01 1 150054064 150054064 A G VPS45 Silent p.S307S 0.38 TCGA-D8-A1J8-01 1 150722569 150722569 C G CTSS Missense_Mutation p.D236H 0.40 tolerated(0.21) benign(0.387) TCGA-D8-A1J8-01 1 150724445 150724445 C - CTSS Frame_Shift_Del p.A147Pfs*6 0.27 TCGA-D8-A1J8-01 1 151076042 151076042 C T GABPB2 Silent p.D209D 0.08 TCGA-D8-A1J8-01 1 152005077 152005077 G A S100A11 3'UTR 0.22 TCGA-D8-A1J8-01 1 152083851 152083853 CTC - TCHH In_Frame_Del p.E614del 0.24 TCGA-D8-A1J8-01 1 153617839 153617839 G A CHTOP 3'UTR 0.35 TCGA-D8-A1J8-01 1 153661986 153661986 G C NPR1 Missense_Mutation p.D916H 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-D8-A1J8-01 1 153914454 153914454 G A DENND4B Missense_Mutation p.R316C 0.42 deleterious(0) possibly_damaging(0.708) TCGA-D8-A1J8-01 1 153925050 153925050 C T CRTC2 Silent p.K233K 0.34 TCGA-D8-A1J8-01 1 155001812 155001812 G C DCST2 Missense_Mutation p.I413M 0.33 tolerated(0.26) benign(0.029) TCGA-D8-A1J8-01 1 155184145 155184145 G C MTX1 3'Flank 0.40 TCGA-D8-A1J8-01 1 155912264 155912264 T G RXFP4 Missense_Mutation p.F255C 0.09 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 1 156214536 156214536 C - PAQR6 Frame_Shift_Del p.G153Afs*17 0.40 TCGA-D8-A1J8-01 1 156639698 156639698 C A NES Nonsense_Mutation p.E1428* 0.26 TCGA-D8-A1J8-01 1 156846307 156846307 G A NTRK1 Missense_Mutation p.R583H 0.46 deleterious(0.01) probably_damaging(0.961) TCGA-D8-A1J8-01 1 157509116 157509116 C T FCRL5 Missense_Mutation p.E388K 0.36 tolerated(0.92) benign(0.058) TCGA-D8-A1J8-01 1 15771218 15771218 G A CTRC Missense_Mutation p.G204E 0.63 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 1 15783223 15783223 G A CELA2A 5'Flank 0.58 TCGA-D8-A1J8-01 1 158299647 158299647 C A CD1B Missense_Mutation p.R201I 0.26 deleterious(0) benign(0.314) TCGA-D8-A1J8-01 1 158435690 158435690 C T OR10K1 Silent p.F113F 0.35 TCGA-D8-A1J8-01 1 159778911 159778911 C T FCRL6 Silent p.G160G 0.34 TCGA-D8-A1J8-01 1 160325718 160325718 C T NCSTN Silent p.F507F 0.27 TCGA-D8-A1J8-01 1 16065220 16065220 C T SLC25A34 Silent p.G243G 0.29 TCGA-D8-A1J8-01 1 16255589 16255589 G A SPEN Missense_Mutation p.V952M 0.46 possibly_damaging(0.794) TCGA-D8-A1J8-01 1 16265817 16265817 G T SPEN Silent p.P3630P 0.54 TCGA-D8-A1J8-01 1 166958583 166958583 C T MAEL 5'UTR 0.15 TCGA-D8-A1J8-01 1 166974320 166974320 A T MAEL Missense_Mutation p.D219V 0.31 tolerated(0.07) possibly_damaging(0.823) TCGA-D8-A1J8-01 1 167873162 167873162 C T ADCY10 Silent p.V72V 0.35 TCGA-D8-A1J8-01 1 169930208 169930208 G A KIFAP3 Missense_Mutation p.P718S 0.09 tolerated(0.25) benign(0.207) TCGA-D8-A1J8-01 1 171165873 171165873 A G FMO2 Missense_Mutation p.Q136R 0.06 deleterious(0.02) benign(0.015) TCGA-D8-A1J8-01 1 173499130 173499130 A G SLC9C2 Missense_Mutation p.Y743H 0.37 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 1 176762724 176762724 C - PAPPA2 Frame_Shift_Del p.S1686Vfs*4 0.27 TCGA-D8-A1J8-01 1 182026740 182026740 C T ZNF648 Missense_Mutation p.G136S 0.17 tolerated_low_confidence(0.62) benign(0.003) TCGA-D8-A1J8-01 1 183519915 183519915 C T SMG7 Missense_Mutation p.H1009Y 0.30 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-D8-A1J8-01 1 184868427 184868427 G A FAM129A Missense_Mutation p.A24V 0.06 tolerated(1) benign(0.012) TCGA-D8-A1J8-01 1 186147874 186147874 G A HMCN1 Missense_Mutation p.E5424K 0.40 possibly_damaging(0.608) TCGA-D8-A1J8-01 1 186643896 186643896 T C PTGS2 Splice_Site p.X469_splice 0.27 TCGA-D8-A1J8-01 1 186648511 186648511 C T PTGS2 Missense_Mutation p.D38N 0.27 tolerated(0.1) benign(0.006) TCGA-D8-A1J8-01 1 190068091 190068091 G A BRINP3 Missense_Mutation p.A453V 0.30 deleterious(0.02) possibly_damaging(0.505) TCGA-D8-A1J8-01 1 196303055 196303055 G A KCNT2 Missense_Mutation p.S640L 0.21 tolerated(0.2) benign(0.139) TCGA-D8-A1J8-01 1 196309545 196309545 C G KCNT2 Missense_Mutation p.R570T 0.31 tolerated(0.17) benign(0.011) TCGA-D8-A1J8-01 1 197404570 197404570 G A CRB1 Missense_Mutation p.D1193N 0.20 tolerated(0.11) possibly_damaging(0.541) TCGA-D8-A1J8-01 1 200528581 200528581 C T KIF14 Splice_Site p.X1411_splice 0.10 TCGA-D8-A1J8-01 1 201028335 201028335 G A CACNA1S Silent p.L1169L 0.26 TCGA-D8-A1J8-01 1 201398178 201398178 G A RP11-134G8.2 RNA 0.22 TCGA-D8-A1J8-01 1 202301082 202301082 C T UBE2T Missense_Mutation p.E159K 0.25 tolerated(0.54) benign(0.001) TCGA-D8-A1J8-01 1 203098124 203098124 C T ADORA1 Missense_Mutation p.A52V 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 1 204125433 204125433 G T REN Nonsense_Mutation p.S278* 0.27 TCGA-D8-A1J8-01 1 204375175 204375175 C G PPP1R15B 3'UTR 0.28 TCGA-D8-A1J8-01 1 205904876 205904876 C G SLC26A9 Missense_Mutation p.E25Q 0.24 tolerated(0.24) benign(0.298) TCGA-D8-A1J8-01 1 209799150 209799150 C T LAMB3 Missense_Mutation p.A607T 0.19 tolerated(0.25) benign(0.002) TCGA-D8-A1J8-01 1 209935932 209935932 G C TRAF3IP3 Missense_Mutation p.D140H 0.20 tolerated(0.1) benign(0.045) TCGA-D8-A1J8-01 1 210024819 210024819 T C DIEXF 3'UTR 0.13 TCGA-D8-A1J8-01 1 21175934 21175934 C T EIF4G3 Missense_Mutation p.E1238K 0.07 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 1 213146162 213146162 C G VASH2 Silent p.V202V 0.48 TCGA-D8-A1J8-01 1 213405537 213405537 G A RPS6KC1 Silent p.V388V 0.05 TCGA-D8-A1J8-01 1 216370014 216370014 G C USH2A Missense_Mutation p.L1378V 0.26 possibly_damaging(0.665) TCGA-D8-A1J8-01 1 220316389 220316389 A G IARS2 Silent p.S888S 0.29 TCGA-D8-A1J8-01 1 221057932 221057932 C T HLX Silent p.C451C 0.21 TCGA-D8-A1J8-01 1 222920391 222920391 G C FAM177B Missense_Mutation p.W70S 0.28 deleterious(0.01) possibly_damaging(0.667) TCGA-D8-A1J8-01 1 22456229 22456229 C T WNT4 Missense_Mutation p.D65N 0.34 tolerated(0.14) benign(0.085) TCGA-D8-A1J8-01 1 225270376 225270376 G C DNAH14 Missense_Mutation p.E166Q 0.23 tolerated(0.51) benign(0.078) TCGA-D8-A1J8-01 1 225707007 225707007 C T ENAH Missense_Mutation p.R232Q 0.24 tolerated_low_confidence(0.54) unknown(0) TCGA-D8-A1J8-01 1 228486990 228486990 G A OBSCN Missense_Mutation p.R4414K 0.26 benign(0.001) TCGA-D8-A1J8-01 1 228495850 228495850 G A OBSCN Missense_Mutation p.E5126K 0.22 probably_damaging(0.956) TCGA-D8-A1J8-01 1 229773599 229773599 C A URB2 Missense_Mutation p.A1080D 0.36 tolerated(0.19) benign(0.216) TCGA-D8-A1J8-01 1 232629407 232629407 C G SIPA1L2 Splice_Site p.X495_splice 0.31 TCGA-D8-A1J8-01 1 236212244 236212244 C A NID1 Nonsense_Mutation p.E91* 0.22 TCGA-D8-A1J8-01 1 236646549 236646549 G A EDARADD 3'Flank 0.22 TCGA-D8-A1J8-01 1 236646765 236646765 G T EDARADD 3'Flank 0.22 TCGA-D8-A1J8-01 1 236914796 236914796 C G ACTN2 Missense_Mutation p.F561L 0.18 tolerated(0.06) probably_damaging(0.948) TCGA-D8-A1J8-01 1 237532877 237532877 C T RYR2 Missense_Mutation p.A118V 0.24 benign(0.344) TCGA-D8-A1J8-01 1 241959640 241959642 AAG - WDR64 In_Frame_Del p.K1046del 0.24 TCGA-D8-A1J8-01 1 242253062 242253062 A - PLD5 3'UTR 0.25 TCGA-D8-A1J8-01 1 247040252 247040271 CATAACATTAATCTTCAGAG - AHCTF1 Frame_Shift_Del p.T982Kfs*2 0.11 TCGA-D8-A1J8-01 1 247040279 247040279 C T AHCTF1 Silent p.L979L 0.10 TCGA-D8-A1J8-01 1 247040285 247040285 C T AHCTF1 Silent p.L977L 0.11 TCGA-D8-A1J8-01 1 2524347 2524347 C G MMEL1 Missense_Mutation p.Q642H 0.43 tolerated(0.12) benign(0.021) TCGA-D8-A1J8-01 1 34330027 34330027 G A HMGB4 Missense_Mutation p.V79I 0.26 tolerated(1) benign(0.003) TCGA-D8-A1J8-01 1 35578941 35578941 A - ZMYM1 Frame_Shift_Del p.T506Pfs*15 0.22 TCGA-D8-A1J8-01 1 40149705 40149705 G A HPCAL4 Silent p.R94R 0.46 TCGA-D8-A1J8-01 1 44684860 44684860 G A DMAP1 Missense_Mutation p.E285K 0.60 tolerated(0.31) benign(0.444) TCGA-D8-A1J8-01 1 47501732 47501732 A G CYP4X1 Missense_Mutation p.I222V 0.41 deleterious(0.02) probably_damaging(0.914) TCGA-D8-A1J8-01 1 62330274 62330274 C T INADL Missense_Mutation p.A935V 0.61 tolerated(0.53) benign(0.002) TCGA-D8-A1J8-01 1 74701796 74701796 G A FPGT-TNNI3K Silent p.K131K 0.64 TCGA-D8-A1J8-01 1 79403912 79403912 G A ELTD1 Missense_Mutation p.S150F 0.56 deleterious(0) probably_damaging(0.962) TCGA-D8-A1J8-01 1 94463492 94463492 G C ABCA4 Missense_Mutation p.I2218M 0.65 deleterious(0.02) probably_damaging(0.99) TCGA-D8-A1J8-01 1 94526200 94526200 T A ABCA4 Missense_Mutation p.T685S 0.16 deleterious(0.01) benign(0.34) TCGA-D8-A1J8-01 20 10393434 10393434 G A MKKS Silent p.L243L 0.32 TCGA-D8-A1J8-01 20 10632838 10632838 C T JAG1 Missense_Mutation p.G316D 0.34 tolerated(0.36) possibly_damaging(0.692) TCGA-D8-A1J8-01 20 18123319 18123319 C G CSRP2BP Missense_Mutation p.I5M 0.47 tolerated_low_confidence(0.1) unknown(0) TCGA-D8-A1J8-01 20 20026080 20026080 C G CRNKL1 Missense_Mutation p.E386Q 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-D8-A1J8-01 20 20553672 20553672 G - RALGAPA2 Frame_Shift_Del p.S919Afs*24 0.21 TCGA-D8-A1J8-01 20 20610050 20610050 G C RALGAPA2 Nonsense_Mutation p.S397* 0.34 TCGA-D8-A1J8-01 20 25187856 25187856 G A ENTPD6 Missense_Mutation p.A67T 0.36 tolerated(0.08) benign(0.035) TCGA-D8-A1J8-01 20 25239910 25239910 G A PYGB Missense_Mutation p.R94H 0.38 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J8-01 20 25388530 25388530 A G GINS1 Missense_Mutation p.N25S 0.26 deleterious(0.02) possibly_damaging(0.472) TCGA-D8-A1J8-01 20 31024523 31024523 G A ASXL1 Silent p.G1336G 0.28 TCGA-D8-A1J8-01 20 31025217 31025217 G A ASXL1 3'UTR 0.41 TCGA-D8-A1J8-01 20 3274894 3274894 T C C20orf194 Missense_Mutation p.Q710R 0.18 tolerated(0.11) possibly_damaging(0.854) TCGA-D8-A1J8-01 20 34091186 34091186 G A CEP250 Silent p.Q1663Q 0.37 TCGA-D8-A1J8-01 20 36026204 36026204 C T SRC Missense_Mutation p.S269L 0.32 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 20 36845798 36845798 C T KIAA1755 Missense_Mutation p.E920K 0.44 tolerated(0.06) benign(0.03) TCGA-D8-A1J8-01 20 40033355 40033355 C T CHD6 Missense_Mutation p.E2676K 0.50 deleterious_low_confidence(0.02) benign(0.003) TCGA-D8-A1J8-01 20 41419914 41419914 C A PTPRT Missense_Mutation p.W136L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 20 41420063 41420063 C T PTPRT Silent p.Q86Q 0.23 TCGA-D8-A1J8-01 20 42164830 42164830 G A L3MBTL1 Silent p.R651R 0.27 TCGA-D8-A1J8-01 20 43992240 43992240 G C SYS1 Missense_Mutation p.Q23H 0.43 deleterious(0) probably_damaging(0.995) TCGA-D8-A1J8-01 20 46280008 46280008 C A NCOA3 Missense_Mutation p.Q1312K 0.27 deleterious(0.02) benign(0.027) TCGA-D8-A1J8-01 20 47701911 47701911 T G CSE1L Missense_Mutation p.Y571D 0.22 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J8-01 20 47887732 47887732 T G ZNFX1 Missense_Mutation p.H206P 0.32 deleterious(0.01) possibly_damaging(0.736) TCGA-D8-A1J8-01 20 55027016 55027016 A G CASS4 Missense_Mutation p.S262G 0.39 tolerated(0.44) benign(0.002) TCGA-D8-A1J8-01 20 58519120 58519120 C A FAM217B Missense_Mutation p.T41N 0.45 tolerated(0.08) benign(0.053) TCGA-D8-A1J8-01 20 58559719 58559719 A G CDH26 Silent p.A189A 0.23 TCGA-D8-A1J8-01 20 60485542 60485542 G A CDH4 Missense_Mutation p.R418Q 0.37 tolerated(0.19) benign(0.301) TCGA-D8-A1J8-01 20 60578217 60578217 G A TAF4 Missense_Mutation p.R829W 0.05 probably_damaging(0.988) TCGA-D8-A1J8-01 20 60585146 60585146 G A TAF4 Nonsense_Mutation p.Q573* 0.35 TCGA-D8-A1J8-01 20 61300421 61300421 C G SLCO4A1 Silent p.L672L 0.42 TCGA-D8-A1J8-01 20 61929275 61929275 G A COL20A1 Silent p.L32L 0.50 TCGA-D8-A1J8-01 20 896631 896631 G T ANGPT4 Missense_Mutation p.P76Q 0.22 deleterious(0.04) benign(0.074) TCGA-D8-A1J8-01 20 9374291 9374291 A - PLCB4 Frame_Shift_Del p.N462Tfs*4 0.23 TCGA-D8-A1J8-01 21 27074517 27074517 A T JAM2 Missense_Mutation p.E211D 0.08 deleterious(0) possibly_damaging(0.811) TCGA-D8-A1J8-01 21 30949301 30949301 T C GRIK1 Missense_Mutation p.T705A 0.42 deleterious(0) probably_damaging(0.99) TCGA-D8-A1J8-01 21 31797808 31797808 A T KRTAP13-3 Missense_Mutation p.S141R 0.58 tolerated(0.13) benign(0.071) TCGA-D8-A1J8-01 21 32639061 32639061 G A TIAM1 Silent p.F76F 0.50 TCGA-D8-A1J8-01 21 34839406 34839406 C G TMEM50B Missense_Mutation p.M41I 0.63 tolerated(1) benign(0.002) TCGA-D8-A1J8-01 21 36088701 36088701 G A CLIC6 Missense_Mutation p.R661K 0.52 deleterious(0.02) possibly_damaging(0.607) TCGA-D8-A1J8-01 21 40795031 40795031 C A LCA5L Silent p.L236L 0.51 TCGA-D8-A1J8-01 21 41384893 41384893 A - DSCAM 3'UTR 0.40 TCGA-D8-A1J8-01 21 43523739 43523739 A G C21orf128 3'UTR 0.48 TCGA-D8-A1J8-01 21 43524173 43524173 G A UMODL1 Missense_Mutation p.D499N 0.60 deleterious(0) possibly_damaging(0.754) TCGA-D8-A1J8-01 21 45180065 45180065 T C PDXK 3'UTR 0.45 TCGA-D8-A1J8-01 22 23603134 23603134 C T BCR Intron 0.10 TCGA-D8-A1J8-01 22 25272622 25272622 C T SGSM1 Missense_Mutation p.S512L 0.46 tolerated(0.3) probably_damaging(0.916) TCGA-D8-A1J8-01 22 28693820 28693820 G A TTC28 Nonsense_Mutation p.Q184* 0.49 TCGA-D8-A1J8-01 22 29091817 29091817 G A CHEK2 Silent p.L423L 0.49 TCGA-D8-A1J8-01 22 29091821 29091821 G A CHEK2 Missense_Mutation p.S422F 0.47 deleterious(0) probably_damaging(0.984) TCGA-D8-A1J8-01 22 30857624 30857624 G C SEC14L3 Missense_Mutation p.Q277E 0.60 tolerated(0.1) possibly_damaging(0.825) TCGA-D8-A1J8-01 22 31679060 31679060 C A PIK3IP1 3'UTR 0.36 TCGA-D8-A1J8-01 22 32211543 32211543 T - DEPDC5 Intron 0.50 TCGA-D8-A1J8-01 22 40757286 40757286 G A ADSL Missense_Mutation p.D268N 0.10 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J8-01 22 40800417 40800417 C T SGSM3 Silent p.R108R 0.59 TCGA-D8-A1J8-01 22 42524214 42524214 G - CYP2D6 Frame_Shift_Del p.R269Efs*3 0.42 TCGA-D8-A1J8-01 22 45595873 45595873 C T KIAA0930 Missense_Mutation p.R304Q 0.56 tolerated(0.09) probably_damaging(0.916) TCGA-D8-A1J8-01 22 45689105 45689105 C T UPK3A Silent p.S205S 0.41 TCGA-D8-A1J8-01 22 50966117 50966117 G A TYMP Silent p.C182C 0.38 TCGA-D8-A1J8-01 2 100013281 100013281 C G EIF5B Missense_Mutation p.R1105G 0.31 probably_damaging(1) TCGA-D8-A1J8-01 2 105924502 105924502 G A TGFBRAP1 Missense_Mutation p.S86L 0.21 deleterious(0.01) probably_damaging(0.968) TCGA-D8-A1J8-01 2 105924524 105924524 C A TGFBRAP1 Missense_Mutation p.V79L 0.28 deleterious(0.01) possibly_damaging(0.826) TCGA-D8-A1J8-01 2 107423287 107423287 G A ST6GAL2 Silent p.L479L 0.23 TCGA-D8-A1J8-01 2 10923563 10923563 C T PDIA6 3'UTR 0.38 TCGA-D8-A1J8-01 2 111416320 111416320 C A BUB1 Splice_Site p.X426_splice 0.38 TCGA-D8-A1J8-01 2 1133479 1133479 C T SNTG2 Missense_Mutation p.A132V 0.04 tolerated(0.09) possibly_damaging(0.734) TCGA-D8-A1J8-01 2 128075321 128075321 C T MAP3K2 Missense_Mutation p.E404K 0.41 tolerated(0.1) probably_damaging(0.998) TCGA-D8-A1J8-01 2 128385990 128385990 G A MYO7B Missense_Mutation p.E1476K 0.28 tolerated(0.07) benign(0.242) TCGA-D8-A1J8-01 2 129075905 129075905 G A HS6ST1 Missense_Mutation p.S78L 0.31 tolerated(0.29) benign(0.011) TCGA-D8-A1J8-01 2 133540873 133540873 C A NCKAP5 Nonsense_Mutation p.E1171* 0.31 TCGA-D8-A1J8-01 2 135957918 135957918 C A ZRANB3 Missense_Mutation p.K1078N 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D8-A1J8-01 2 136594224 136594224 G A LCT Silent p.F172F 0.22 TCGA-D8-A1J8-01 2 138414685 138414685 G A THSD7B Missense_Mutation p.E1447K 0.16 tolerated(0.38) unknown(0) TCGA-D8-A1J8-01 2 141116507 141116507 G A LRP1B Missense_Mutation p.L3714F 0.34 benign(0.004) TCGA-D8-A1J8-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.36 TCGA-D8-A1J8-01 2 149803410 149803410 C T KIF5C Intron 0.32 TCGA-D8-A1J8-01 2 155115572 155115572 G A GALNT13 Missense_Mutation p.R299K 0.15 tolerated(0.58) benign(0.015) TCGA-D8-A1J8-01 2 15519929 15519929 A G NBAS Silent p.S1129S 0.31 TCGA-D8-A1J8-01 2 15519956 15519956 C G NBAS Splice_Site p.X1121_splice 0.33 TCGA-D8-A1J8-01 2 158153015 158153015 G C GALNT5 Missense_Mutation p.D663H 0.34 deleterious(0) probably_damaging(0.973) TCGA-D8-A1J8-01 2 159201816 159201816 C T CCDC148 Missense_Mutation p.M54I 0.34 tolerated(0.49) benign(0) TCGA-D8-A1J8-01 2 160176646 160176646 T - BAZ2B 3'UTR 0.33 TCGA-D8-A1J8-01 2 160176804 160176804 T - BAZ2B Frame_Shift_Del p.K2160Sfs*8 0.27 TCGA-D8-A1J8-01 2 162273201 162273201 C T TBR1 Missense_Mutation p.R94C 0.28 deleterious(0) probably_damaging(0.973) TCGA-D8-A1J8-01 2 162274263 162274263 A T TBR1 Missense_Mutation p.I257F 0.28 deleterious(0.01) benign(0.002) TCGA-D8-A1J8-01 2 162849549 162849549 G A DPP4 3'UTR 0.36 TCGA-D8-A1J8-01 2 165972038 165972040 AAC - SCN3A In_Frame_Del p.V1147del 0.37 TCGA-D8-A1J8-01 2 167289026 167289026 C T SCN7A Silent p.L798L 0.29 TCGA-D8-A1J8-01 2 170505788 170505788 C T CCDC173 Missense_Mutation p.M407I 0.34 tolerated(0.36) benign(0.006) TCGA-D8-A1J8-01 2 170537638 170537638 A T CCDC173 Missense_Mutation p.I58N 0.18 deleterious(0) possibly_damaging(0.839) TCGA-D8-A1J8-01 2 175619015 175619015 C G CHRNA1 Missense_Mutation p.D183H 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 2 179396976 179396976 T C TTN Missense_Mutation p.E34789G 0.25 TCGA-D8-A1J8-01 2 179428340 179428340 C G TTN Missense_Mutation p.E27507Q 0.31 TCGA-D8-A1J8-01 2 179432783 179432783 G T TTN Missense_Mutation p.H26026N 0.05 TCGA-D8-A1J8-01 2 179435966 179435966 G C TTN Missense_Mutation p.Q24965E 0.25 TCGA-D8-A1J8-01 2 179595841 179595841 C G TTN Missense_Mutation p.E5851Q 0.35 TCGA-D8-A1J8-01 2 179602965 179602965 C G TTN Missense_Mutation p.E4739Q 0.37 TCGA-D8-A1J8-01 2 179643760 179643760 C T TTN Missense_Mutation p.R1350H 0.35 TCGA-D8-A1J8-01 2 179656925 179656925 C G TTN Splice_Site p.X513_splice 0.31 TCGA-D8-A1J8-01 2 182400156 182400156 C A ITGA4 Intron 0.25 TCGA-D8-A1J8-01 2 183624001 183624001 G A DNAJC10 Silent p.Q704Q 0.37 TCGA-D8-A1J8-01 2 189957098 189957098 G T COL5A2 Missense_Mutation p.Q169K 0.30 probably_damaging(0.949) TCGA-D8-A1J8-01 2 191843677 191843677 T A STAT1 Missense_Mutation p.D593V 0.36 deleterious(0.03) benign(0.144) TCGA-D8-A1J8-01 2 196636482 196636482 G A DNAH7 Nonsense_Mutation p.Q3779* 0.30 TCGA-D8-A1J8-01 2 202245494 202245494 C G TRAK2 Missense_Mutation p.K839N 0.40 deleterious(0) probably_damaging(0.995) TCGA-D8-A1J8-01 2 202344866 202344866 C G STRADB Missense_Mutation p.P409A 0.32 tolerated(0.2) benign(0.001) TCGA-D8-A1J8-01 2 202712166 202712166 A G CDK15 Missense_Mutation p.N305S 0.17 tolerated(0.25) benign(0) TCGA-D8-A1J8-01 2 208632887 208632887 G A FZD5 Missense_Mutation p.R193C 0.24 deleterious(0) possibly_damaging(0.772) TCGA-D8-A1J8-01 2 212578306 212578306 T C ERBB4 Silent p.E317E 0.24 TCGA-D8-A1J8-01 2 220427277 220427277 C G OBSL1 Missense_Mutation p.D934H 0.24 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 2 220428119 220428119 C T OBSL1 Missense_Mutation p.V880I 0.28 tolerated(0.08) possibly_damaging(0.837) TCGA-D8-A1J8-01 2 220433035 220433035 G A OBSL1 Missense_Mutation p.R342W 0.82 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J8-01 2 220505649 220505649 C T SLC4A3 Silent p.L1223L 0.25 TCGA-D8-A1J8-01 2 222429083 222429083 T - EPHA4 Frame_Shift_Del p.N64Ifs*12 0.24 TCGA-D8-A1J8-01 2 225661749 225661749 G C DOCK10 Missense_Mutation p.L1587V 0.06 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 2 227872982 227872982 G A COL4A4 Missense_Mutation p.P1521S 0.31 unknown(0) TCGA-D8-A1J8-01 2 232035319 232035319 G C PSMD1 Missense_Mutation p.E919Q 0.31 tolerated(0.14) benign(0.066) TCGA-D8-A1J8-01 2 232325216 232325216 G C NCL Missense_Mutation p.P291A 0.29 benign(0.391) TCGA-D8-A1J8-01 2 233655742 233655742 G A GIGYF2 Missense_Mutation p.E341K 0.42 probably_damaging(0.993) TCGA-D8-A1J8-01 2 234359584 234359584 T A DGKD Nonsense_Mutation p.C685* 0.40 TCGA-D8-A1J8-01 2 235950796 235950796 C G SH3BP4 Silent p.L461L 0.37 TCGA-D8-A1J8-01 2 238725800 238725800 T - RBM44 Frame_Shift_Del p.S83Qfs*2 0.19 TCGA-D8-A1J8-01 2 239155114 239155114 C T PER2 Missense_Mutation p.E1224K 0.34 deleterious(0.01) probably_damaging(0.931) TCGA-D8-A1J8-01 2 240056337 240056337 C T HDAC4 Silent p.T327T 0.37 TCGA-D8-A1J8-01 2 241531440 241531440 G A CAPN10 Silent p.L187L 0.31 TCGA-D8-A1J8-01 2 241969770 241969770 G A SNED1 Missense_Mutation p.A95T 0.31 tolerated(0.06) possibly_damaging(0.507) TCGA-D8-A1J8-01 2 242811980 242811980 C T CXXC11 Silent p.D24D 0.23 TCGA-D8-A1J8-01 2 25523047 25523047 C T DNMT3A Silent p.R46R 0.25 TCGA-D8-A1J8-01 2 28771790 28771790 C T PLB1 Missense_Mutation p.P334S 0.35 deleterious(0.04) possibly_damaging(0.817) TCGA-D8-A1J8-01 2 30379522 30379522 G A YPEL5 Missense_Mutation p.G2D 0.25 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 2 32712851 32712851 C T BIRC6 Nonsense_Mutation p.Q2651* 0.06 TCGA-D8-A1J8-01 2 36744631 36744631 C T CRIM1 Silent p.L718L 0.08 TCGA-D8-A1J8-01 2 37499526 37499526 A G PRKD3 Silent p.N567N 0.32 TCGA-D8-A1J8-01 2 39081307 39081307 C T DHX57 Missense_Mutation p.R640K 0.36 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 2 39082249 39082249 C T DHX57 Missense_Mutation p.E619K 0.37 deleterious(0) probably_damaging(0.995) TCGA-D8-A1J8-01 2 39083579 39083579 G A DHX57 Silent p.L538L 0.25 TCGA-D8-A1J8-01 2 39088557 39088557 C T DHX57 Missense_Mutation p.G332E 0.33 tolerated(0.6) benign(0.081) TCGA-D8-A1J8-01 2 42530295 42530295 C T EML4 Nonsense_Mutation p.Q565* 0.34 TCGA-D8-A1J8-01 2 43452623 43452623 C - ZFP36L2 Frame_Shift_Del p.G107Afs*80 0.35 TCGA-D8-A1J8-01 2 43802047 43802047 G A THADA Missense_Mutation p.S386L 0.32 deleterious(0) possibly_damaging(0.796) TCGA-D8-A1J8-01 2 43871929 43871929 A G PLEKHH2 Silent p.A39A 0.41 TCGA-D8-A1J8-01 2 48027584 48027584 T C MSH6 Missense_Mutation p.L821P 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 2 54081853 54081853 G A GPR75 Missense_Mutation p.T14I 0.32 deleterious_low_confidence(0.01) benign(0.268) TCGA-D8-A1J8-01 2 54081901 54081901 G A GPR75 5'UTR 0.41 TCGA-D8-A1J8-01 2 54155412 54155412 C A PSME4 Nonsense_Mutation p.E449* 0.28 TCGA-D8-A1J8-01 2 54785824 54785824 G A SPTBN1 Intron 0.62 TCGA-D8-A1J8-01 2 55197473 55197473 G C EML6 3'UTR 0.31 TCGA-D8-A1J8-01 2 55200264 55200264 G A RTN4 3'UTR 0.04 TCGA-D8-A1J8-01 2 63822565 63822565 T C MDH1 Silent p.I55I 0.12 TCGA-D8-A1J8-01 2 64160970 64160970 C T VPS54 Missense_Mutation p.E526K 0.32 tolerated(0.05) benign(0.05) TCGA-D8-A1J8-01 2 64863616 64863616 G A SERTAD2 Silent p.L130L 0.17 TCGA-D8-A1J8-01 2 69092781 69092781 G A BMP10 Silent p.S419S 0.29 TCGA-D8-A1J8-01 2 70377535 70377535 C G C2orf42 Missense_Mutation p.D560H 0.33 deleterious_low_confidence(0.02) benign(0.398) TCGA-D8-A1J8-01 2 74177789 74177789 C G DGUOK Missense_Mutation p.S174C 0.25 deleterious(0) possibly_damaging(0.854) TCGA-D8-A1J8-01 2 74333697 74333697 C G TET3 3'UTR 0.26 TCGA-D8-A1J8-01 2 74335128 74335128 C T TET3 3'UTR 0.25 TCGA-D8-A1J8-01 2 74752197 74752197 C A DQX1 Missense_Mutation p.G124C 0.41 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 2 74906801 74906801 G C SEMA4F Missense_Mutation p.W593S 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 2 77745581 77745581 C T LRRTM4 Missense_Mutation p.E472K 0.37 tolerated(0.37) possibly_damaging(0.718) TCGA-D8-A1J8-01 2 86831694 86831694 T C RNF103 Missense_Mutation p.N444D 0.28 tolerated(1) benign(0) TCGA-D8-A1J8-01 2 89459508 89459508 C G IGKV6-21 Silent p.L23L 0.20 TCGA-D8-A1J8-01 2 96993969 96993969 G A ITPRIPL1 Missense_Mutation p.E542K 0.41 tolerated(0.55) possibly_damaging(0.737) TCGA-D8-A1J8-01 2 98171711 98171711 G A ANKRD36B RNA 0.26 TCGA-D8-A1J8-01 2 98351824 98351824 C T ZAP70 Silent p.I398I 0.24 TCGA-D8-A1J8-01 2 98392392 98392392 C T TMEM131 Missense_Mutation p.E1412K 0.04 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-D8-A1J8-01 3 100058030 100058030 C T NIT2 Missense_Mutation p.A36V 0.12 deleterious(0.01) possibly_damaging(0.832) TCGA-D8-A1J8-01 3 105250904 105250904 A - ALCAM Frame_Shift_Del p.K153Sfs*34 0.18 TCGA-D8-A1J8-01 3 10970889 10970889 T C SLC6A11 Missense_Mutation p.F412S 0.12 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 3 111286411 111286411 G A CD96 Missense_Mutation p.E154K 0.51 tolerated(0.37) benign(0.016) TCGA-D8-A1J8-01 3 113164108 113164108 G C SPICE1 3'UTR 0.47 TCGA-D8-A1J8-01 3 113187080 113187080 C T SPICE1 Missense_Mutation p.R354H 0.06 deleterious(0.04) benign(0.424) TCGA-D8-A1J8-01 3 119209419 119209419 C T POGLUT1 Silent p.G273G 0.20 TCGA-D8-A1J8-01 3 121409810 121409810 C T GOLGB1 Missense_Mutation p.E2801K 0.44 benign(0.275) TCGA-D8-A1J8-01 3 122354880 122354880 C T PARP15 Missense_Mutation p.P657L 0.55 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 3 125874329 125874329 C T ALDH1L1 Silent p.L192L 0.60 TCGA-D8-A1J8-01 3 138014901 138014901 T - ARMC8 3'UTR 0.50 TCGA-D8-A1J8-01 3 138403593 138403593 G A PIK3CB Missense_Mutation p.A730V 0.41 tolerated(0.11) benign(0.017) TCGA-D8-A1J8-01 3 14208754 14208754 C T XPC Splice_Site p.X179_splice 0.19 TCGA-D8-A1J8-01 3 149039271 149039271 G T TM4SF18 Silent p.I200I 0.49 TCGA-D8-A1J8-01 3 157318223 157318223 G A C3orf55 3'UTR 0.52 TCGA-D8-A1J8-01 3 169572700 169572700 C A LRRC31 Missense_Mutation p.G298C 0.40 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.58 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1J8-01 3 183525829 183525829 C T YEATS2 Silent p.T1341T 0.54 TCGA-D8-A1J8-01 3 183898910 183898910 G T AP2M1 Silent p.V201V 0.56 TCGA-D8-A1J8-01 3 189612137 189612137 C G TP63 Missense_Mutation p.S630C 0.42 deleterious(0.01) possibly_damaging(0.751) TCGA-D8-A1J8-01 3 189612350 189612350 C T TP63 3'UTR 0.45 TCGA-D8-A1J8-01 3 189612351 189612351 C T TP63 3'UTR 0.45 TCGA-D8-A1J8-01 3 194379779 194379779 C G LSG1 Silent p.R222R 0.36 TCGA-D8-A1J8-01 3 197427635 197427635 C A KIAA0226 Silent p.G370G 0.62 TCGA-D8-A1J8-01 3 197427778 197427778 C G KIAA0226 Missense_Mutation p.E323Q 0.75 deleterious(0) probably_damaging(0.985) TCGA-D8-A1J8-01 3 31661216 31661216 A G STT3B Silent p.Q407Q 0.50 TCGA-D8-A1J8-01 3 39162578 39162578 G T TTC21A Nonsense_Mutation p.E339* 0.41 TCGA-D8-A1J8-01 3 41795894 41795894 C G ULK4 Missense_Mutation p.L760F 0.47 deleterious(0.04) benign(0.08) TCGA-D8-A1J8-01 3 44489770 44489770 C G ZNF445 Missense_Mutation p.D465H 0.46 tolerated(0.15) possibly_damaging(0.861) TCGA-D8-A1J8-01 3 48460709 48460709 G A PLXNB1 Missense_Mutation p.P926S 0.38 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J8-01 3 48501834 48501834 G C ATRIP Missense_Mutation p.E461Q 0.44 tolerated(0.41) possibly_damaging(0.708) TCGA-D8-A1J8-01 3 49692119 49692119 C T BSN Silent p.A1710A 0.42 TCGA-D8-A1J8-01 3 49759422 49759422 G A GMPPB Silent p.G309G 0.33 TCGA-D8-A1J8-01 3 50386159 50386159 C G NPRL2 Missense_Mutation p.D214H 0.46 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 3 50418195 50418195 C T CACNA2D2 Missense_Mutation p.V276I 0.62 deleterious(0) probably_damaging(0.943) TCGA-D8-A1J8-01 3 51679729 51679729 G C RAD54L2 Missense_Mutation p.E927Q 0.11 deleterious(0.01) possibly_damaging(0.623) TCGA-D8-A1J8-01 3 51989737 51989737 C T GPR62 Silent p.V23V 0.25 TCGA-D8-A1J8-01 3 52290516 52290516 G T WDR82 3'UTR 0.58 TCGA-D8-A1J8-01 3 52290543 52290543 C G WDR82 3'UTR 0.44 TCGA-D8-A1J8-01 3 52512531 52512531 C G NISCH Missense_Mutation p.L414V 0.61 tolerated(0.22) benign(0.12) TCGA-D8-A1J8-01 3 52841021 52841021 G C ITIH3 Missense_Mutation p.D721H 0.52 tolerated(0.12) benign(0.179) TCGA-D8-A1J8-01 3 52874421 52874422 AG - TMEM110 3'UTR 0.27 TCGA-D8-A1J8-01 3 53213754 53213754 G A PRKCD Missense_Mutation p.E93K 0.61 deleterious(0.02) probably_damaging(0.998) TCGA-D8-A1J8-01 3 53769442 53769442 T C CACNA1D Missense_Mutation p.F908S 0.16 deleterious(0) possibly_damaging(0.854) TCGA-D8-A1J8-01 3 53902779 53902779 G A ACTR8 Silent p.R614R 0.34 TCGA-D8-A1J8-01 3 57276921 57276921 A - APPL1 Frame_Shift_Del p.R154Efs*6 0.41 TCGA-D8-A1J8-01 3 58183604 58183604 C T DNASE1L3 Silent p.L216L 0.60 TCGA-D8-A1J8-01 3 64608119 64608119 T A ADAMTS9 Missense_Mutation p.I845F 0.09 deleterious(0.01) possibly_damaging(0.795) TCGA-D8-A1J8-01 3 65349175 65349175 C T MAGI1 Missense_Mutation p.E1154K 0.66 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 3 6903444 6903444 C T GRM7 Silent p.V123V 0.29 TCGA-D8-A1J8-01 3 97731335 97731335 C T GABRR3 Intron 0.32 TCGA-D8-A1J8-01 3 97983873 97983873 G T OR5H6 Missense_Mutation p.G249W 0.45 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 3 9870740 9870740 G C TTLL3 Missense_Mutation p.Q548H 0.29 tolerated(0.14) benign(0.089) TCGA-D8-A1J8-01 4 100003226 100003226 C G ADH5 Silent p.L52L 0.49 TCGA-D8-A1J8-01 4 106155841 106155841 C G TET2 Missense_Mutation p.H248D 0.62 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 4 114232536 114232536 G C ANK2 Missense_Mutation p.E892Q 0.49 possibly_damaging(0.662) TCGA-D8-A1J8-01 4 119202967 119202967 T - PRSS12 3'UTR 0.15 TCGA-D8-A1J8-01 4 123239410 123239410 G A KIAA1109 Silent p.R3593R 0.54 TCGA-D8-A1J8-01 4 152498704 152498704 C T FAM160A1 Missense_Mutation p.H70Y 0.11 deleterious(0) probably_damaging(0.995) TCGA-D8-A1J8-01 4 152592313 152592313 G A PET112 3'UTR 0.47 TCGA-D8-A1J8-01 4 15613942 15613942 G C FBXL5 Nonsense_Mutation p.S649* 0.17 TCGA-D8-A1J8-01 4 16900172 16900172 G A LDB2 5'UTR 0.35 TCGA-D8-A1J8-01 4 169195233 169195233 C T DDX60 Missense_Mutation p.R769Q 0.53 deleterious(0.04) benign(0.382) TCGA-D8-A1J8-01 4 169204706 169204706 A G DDX60 Missense_Mutation p.F538S 0.10 deleterious(0) possibly_damaging(0.703) TCGA-D8-A1J8-01 4 169206004 169206004 C G DDX60 Missense_Mutation p.D510H 0.53 deleterious(0) probably_damaging(0.966) TCGA-D8-A1J8-01 4 183600901 183600901 G T TENM3 Missense_Mutation p.R470L 0.49 deleterious(0.03) possibly_damaging(0.726) TCGA-D8-A1J8-01 4 20521058 20521058 T C SLIT2 Missense_Mutation p.L371P 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 4 25005603 25005603 A G LGI2 Missense_Mutation p.W370R 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 4 26491955 26491955 C G CCKAR 5'UTR 0.33 TCGA-D8-A1J8-01 4 30725095 30725095 T - PCDH7 Frame_Shift_Del p.S686Lfs*47 0.21 TCGA-D8-A1J8-01 4 3205874 3205874 T C HTT Missense_Mutation p.V1906A 0.22 probably_damaging(0.984) TCGA-D8-A1J8-01 4 44176724 44176724 G A KCTD8 3'UTR 0.65 TCGA-D8-A1J8-01 4 44724209 44724209 G A GNPDA2 Missense_Mutation p.L6F 0.25 tolerated_low_confidence(0.51) probably_damaging(0.982) TCGA-D8-A1J8-01 4 47605516 47605516 C T CORIN Missense_Mutation p.E904K 0.41 tolerated(0.14) possibly_damaging(0.72) TCGA-D8-A1J8-01 4 48152946 48152946 C T TEC Missense_Mutation p.G269D 0.65 deleterious(0) possibly_damaging(0.771) TCGA-D8-A1J8-01 4 533005 533005 G A PIGG Silent p.T933T 0.05 TCGA-D8-A1J8-01 4 55964914 55964914 C T KDR Missense_Mutation p.A775T 0.39 deleterious(0) probably_damaging(0.96) TCGA-D8-A1J8-01 4 56301668 56301668 G A CLOCK Nonsense_Mutation p.Q819* 0.07 TCGA-D8-A1J8-01 4 62935956 62935956 G A LPHN3 Missense_Mutation p.G1247D 0.08 deleterious(0.01) possibly_damaging(0.752) TCGA-D8-A1J8-01 4 66286268 66286268 G A EPHA5 Missense_Mutation p.T473I 0.13 tolerated(0.15) possibly_damaging(0.583) TCGA-D8-A1J8-01 4 72400045 72400045 G A SLC4A4 Silent p.L794L 0.60 TCGA-D8-A1J8-01 4 76570700 76570700 G T G3BP2 Missense_Mutation p.P455T 0.47 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D8-A1J8-01 4 85741259 85741259 G C WDFY3 Missense_Mutation p.Q558E 0.37 tolerated(0.77) benign(0.007) TCGA-D8-A1J8-01 4 99403180 99403181 - T TSPAN5 Frame_Shift_Ins p.N142Kfs*19 0.25 TCGA-D8-A1J8-01 5 108719179 108719179 G C PJA2 5'UTR 0.33 TCGA-D8-A1J8-01 5 112889355 112889355 G A YTHDC2 Missense_Mutation p.D646N 0.28 tolerated(0.07) benign(0.093) TCGA-D8-A1J8-01 5 115146973 115146973 C G CDO1 Missense_Mutation p.K96N 0.40 deleterious(0) probably_damaging(0.994) TCGA-D8-A1J8-01 5 118469586 118469586 C T DMXL1 Missense_Mutation p.S656L 0.43 deleterious(0) possibly_damaging(0.703) TCGA-D8-A1J8-01 5 118479553 118479553 C G DMXL1 Silent p.V798V 0.33 TCGA-D8-A1J8-01 5 122359451 122359451 G C PPIC 3'UTR 0.22 TCGA-D8-A1J8-01 5 127522339 127522339 G A SLC12A2 3'UTR 0.26 TCGA-D8-A1J8-01 5 130764664 130764664 G A CTC-432M15.3 Nonsense_Mutation p.Q1621* 0.45 TCGA-D8-A1J8-01 5 131924411 131924411 G C RAD50 Missense_Mutation p.E362Q 0.27 tolerated(0.52) benign(0.019) TCGA-D8-A1J8-01 5 1335215 1335215 G C CLPTM1L Missense_Mutation p.F251L 0.21 tolerated(1) benign(0.003) TCGA-D8-A1J8-01 5 133914669 133914669 G C JADE2 Missense_Mutation p.E679Q 0.44 tolerated(0.49) benign(0.043) TCGA-D8-A1J8-01 5 137426381 137426381 G A WNT8A Silent p.L225L 0.20 TCGA-D8-A1J8-01 5 138737460 138737460 G C SPATA24 Silent p.L123L 0.19 TCGA-D8-A1J8-01 5 139193060 139193060 C A PSD2 Missense_Mutation p.L180I 0.27 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 5 139722273 139722273 G A HBEGF Silent p.F115F 0.35 TCGA-D8-A1J8-01 5 139722293 139722293 G C HBEGF Missense_Mutation p.L109V 0.32 deleterious(0.02) probably_damaging(0.924) TCGA-D8-A1J8-01 5 139876234 139876234 G C ANKHD1 Missense_Mutation p.R792T 0.36 unknown(0) TCGA-D8-A1J8-01 5 140208977 140208977 C T PCDHA6 Missense_Mutation p.S434L 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.548) TCGA-D8-A1J8-01 5 140256844 140256844 C T PCDHA12 Missense_Mutation p.A596V 0.08 deleterious_low_confidence(0.02) probably_damaging(0.923) TCGA-D8-A1J8-01 5 140306817 140306817 G A PCDHAC1 Missense_Mutation p.V114I 0.21 tolerated(0.82) benign(0.052) TCGA-D8-A1J8-01 5 140390429 140390429 A - PCDHAC1 3'UTR 0.26 TCGA-D8-A1J8-01 5 140390931 140390931 C T PCDHAC1 3'UTR 0.28 TCGA-D8-A1J8-01 5 140537101 140537101 A G PCDHB17 Missense_Mutation p.T509A 0.13 tolerated_low_confidence(1) benign(0.004) TCGA-D8-A1J8-01 5 140537103 140537103 A G PCDHB17 Silent p.T509T 0.14 TCGA-D8-A1J8-01 5 140537121 140537121 T C PCDHB17 Silent p.F515F 0.19 TCGA-D8-A1J8-01 5 140736993 140736993 C T PCDHGA4 Silent p.G742G 0.38 TCGA-D8-A1J8-01 5 145886756 145886756 G T TCERG1 Missense_Mutation p.D966Y 0.31 deleterious(0) unknown(0) TCGA-D8-A1J8-01 5 148610219 148610219 G T ABLIM3 Missense_Mutation p.E255D 0.32 tolerated(0.12) possibly_damaging(0.788) TCGA-D8-A1J8-01 5 149624888 149624888 G A CAMK2A Intron 0.29 TCGA-D8-A1J8-01 5 150028481 150028481 C T SYNPO Missense_Mutation p.A459V 0.22 tolerated(0.13) benign(0.009) TCGA-D8-A1J8-01 5 150646902 150646902 G A GM2A Missense_Mutation p.E158K 0.29 tolerated(0.07) benign(0.034) TCGA-D8-A1J8-01 5 156641279 156641279 C T ITK Nonsense_Mutation p.Q135* 0.29 TCGA-D8-A1J8-01 5 156921772 156921772 C T ADAM19 Silent p.E542E 0.32 TCGA-D8-A1J8-01 5 157053418 157053418 G C SOX30 Missense_Mutation p.S731C 0.31 deleterious(0) possibly_damaging(0.907) TCGA-D8-A1J8-01 5 157065288 157065288 G C SOX30 Missense_Mutation p.F610L 0.29 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 5 167851016 167851016 G A WWC1 Missense_Mutation p.A585T 0.20 tolerated(0.61) benign(0.001) TCGA-D8-A1J8-01 5 169015404 169015404 A - SPDL1 5'UTR 0.48 TCGA-D8-A1J8-01 5 16935899 16935899 C T MYO10 Missense_Mutation p.E7K 0.30 tolerated(0.57) benign(0.015) TCGA-D8-A1J8-01 5 170883738 170883738 C T FGF18 Missense_Mutation p.L185F 0.29 tolerated(0.63) benign(0.081) TCGA-D8-A1J8-01 5 179004109 179004109 G T RUFY1 Missense_Mutation p.D288Y 0.36 deleterious(0) probably_damaging(0.959) TCGA-D8-A1J8-01 5 180276755 180276755 T C ZFP62 Silent p.K580K 0.06 TCGA-D8-A1J8-01 5 35065595 35065595 C T PRLR Missense_Mutation p.D489N 0.37 tolerated(0.11) possibly_damaging(0.629) TCGA-D8-A1J8-01 5 37815909 37815909 C T GDNF Silent p.L177L 0.28 TCGA-D8-A1J8-01 5 39389226 39389226 C T DAB2 Splice_Site p.X182_splice 0.35 TCGA-D8-A1J8-01 5 40854328 40854328 C G CARD6 Missense_Mutation p.S965C 0.33 deleterious(0.01) benign(0.023) TCGA-D8-A1J8-01 5 40854345 40854345 C T CARD6 Nonsense_Mutation p.Q971* 0.33 TCGA-D8-A1J8-01 5 54579162 54579162 C G DHX29 Missense_Mutation p.D612H 0.25 deleterious(0) probably_damaging(0.985) TCGA-D8-A1J8-01 5 65321315 65321315 G A ERBB2IP Silent p.L275L 0.32 TCGA-D8-A1J8-01 5 65321692 65321692 G C ERBB2IP Missense_Mutation p.E303Q 0.39 deleterious(0) probably_damaging(0.911) TCGA-D8-A1J8-01 5 65349777 65349777 G C ERBB2IP Missense_Mutation p.E877D 0.43 tolerated(0.94) benign(0.007) TCGA-D8-A1J8-01 5 65350195 65350195 G A ERBB2IP Missense_Mutation p.E1017K 0.49 tolerated(0.2) possibly_damaging(0.593) TCGA-D8-A1J8-01 5 65350414 65350414 G T ERBB2IP Missense_Mutation p.D1090Y 0.43 deleterious(0) possibly_damaging(0.823) TCGA-D8-A1J8-01 5 65371041 65371041 G A ERBB2IP Missense_Mutation p.E1323K 0.37 tolerated(0.08) possibly_damaging(0.648) TCGA-D8-A1J8-01 5 66459594 66459594 C T MAST4 Silent p.R1529R 0.39 TCGA-D8-A1J8-01 5 67584561 67584561 G A PIK3R1 Intron 0.08 TCGA-D8-A1J8-01 5 72865429 72865429 C T UTP15 Missense_Mutation p.T159I 0.28 tolerated(0.18) benign(0.101) TCGA-D8-A1J8-01 5 74130403 74130403 C G FAM169A Missense_Mutation p.R113T 0.36 deleterious(0) probably_damaging(0.997) TCGA-D8-A1J8-01 5 75913971 75913971 G C F2RL2 Missense_Mutation p.I187M 0.50 tolerated(0.21) benign(0.422) TCGA-D8-A1J8-01 5 76251689 76251689 G A CRHBP Splice_Site p.X182_splice 0.30 TCGA-D8-A1J8-01 5 76785328 76785328 C G WDR41 Missense_Mutation p.A41P 0.36 deleterious(0.02) possibly_damaging(0.704) TCGA-D8-A1J8-01 5 78351683 78351683 G A DMGDH Missense_Mutation p.H109Y 0.30 deleterious(0) probably_damaging(0.988) TCGA-D8-A1J8-01 5 78533503 78533503 G T JMY Nonsense_Mutation p.E344* 0.50 TCGA-D8-A1J8-01 5 79029944 79029944 A T CMYA5 Missense_Mutation p.I1786F 0.42 benign(0.059) TCGA-D8-A1J8-01 5 80655778 80655778 C T ACOT12 Missense_Mutation p.R147Q 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1J8-01 5 88026048 88026048 C T MEF2C Intron 0.30 TCGA-D8-A1J8-01 5 94927253 94927253 G A ARSK Missense_Mutation p.M340I 0.30 tolerated(0.89) benign(0.001) TCGA-D8-A1J8-01 5 95768600 95768600 G A PCSK1 Silent p.I49I 0.39 TCGA-D8-A1J8-01 5 9629676 9629676 T A TAS2R1 Missense_Mutation p.R157W 0.29 tolerated(0.08) possibly_damaging(0.886) TCGA-D8-A1J8-01 6 108645100 108645100 G A LACE1 Missense_Mutation p.V71I 0.59 tolerated(0.26) benign(0.001) TCGA-D8-A1J8-01 6 109814642 109814642 C T AK9 Missense_Mutation p.R1889K 0.68 deleterious(0.02) probably_damaging(0.986) TCGA-D8-A1J8-01 6 109819084 109819084 T G AK9 Missense_Mutation p.T1711P 0.65 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J8-01 6 110752420 110752420 G A SLC22A16 Missense_Mutation p.A492V 0.19 tolerated(0.12) possibly_damaging(0.804) TCGA-D8-A1J8-01 6 119510960 119510960 C T MAN1A1 Missense_Mutation p.G472D 0.19 tolerated(0.57) probably_damaging(0.999) TCGA-D8-A1J8-01 6 12161698 12161698 C T HIVEP1 Nonsense_Mutation p.R2172* 0.28 TCGA-D8-A1J8-01 6 126080335 126080335 C T HEY2 Missense_Mutation p.A134V 0.10 tolerated(0.28) possibly_damaging(0.464) TCGA-D8-A1J8-01 6 126319391 126319391 C T TRMT11 Missense_Mutation p.S106F 0.66 tolerated(0.07) benign(0.197) TCGA-D8-A1J8-01 6 130535565 130535565 T - SAMD3 Frame_Shift_Del p.K62Nfs*9 0.13 TCGA-D8-A1J8-01 6 131222189 131222189 C T EPB41L2 Missense_Mutation p.G354D 0.69 tolerated(0.15) benign(0.003) TCGA-D8-A1J8-01 6 132031204 132031204 C T CTAGE9 Silent p.L318L 0.68 TCGA-D8-A1J8-01 6 13286408 13286408 A G TBC1D7 Intron 0.14 TCGA-D8-A1J8-01 6 133065437 133065437 C A VNN2 3'UTR 0.52 TCGA-D8-A1J8-01 6 135778809 135778809 T C AHI1 Missense_Mutation p.E325G 0.15 deleterious(0) possibly_damaging(0.543) TCGA-D8-A1J8-01 6 136687005 136687005 C G MAP7 Missense_Mutation p.E403Q 0.68 tolerated(0.06) probably_damaging(0.987) TCGA-D8-A1J8-01 6 14133922 14133922 G A CD83 Missense_Mutation p.R142K 0.07 tolerated(0.57) benign(0.038) TCGA-D8-A1J8-01 6 150052790 150052790 G A NUP43 Missense_Mutation p.A291V 0.24 tolerated(0.13) benign(0.008) TCGA-D8-A1J8-01 6 152265369 152265369 G A ESR1 Silent p.G274G 0.72 TCGA-D8-A1J8-01 6 155148305 155148305 G T SCAF8 Splice_Site p.X691_splice 0.69 TCGA-D8-A1J8-01 6 160176453 160176453 C T WTAP Missense_Mutation p.A334V 0.73 tolerated_low_confidence(0.33) benign(0.003) TCGA-D8-A1J8-01 6 168949861 168949861 G T SMOC2 Missense_Mutation p.Q216H 0.29 deleterious(0.05) possibly_damaging(0.605) TCGA-D8-A1J8-01 6 26031967 26031967 T C HIST1H3B Missense_Mutation p.T108A 0.21 deleterious_low_confidence(0) benign(0.023) TCGA-D8-A1J8-01 6 28056587 28056587 G A ZNF165 Missense_Mutation p.R266K 0.60 tolerated(0.88) benign(0.018) TCGA-D8-A1J8-01 6 29911954 29911954 G T HLA-A Silent p.L225L 0.65 TCGA-D8-A1J8-01 6 30457320 30457320 A G HLA-E Silent p.G4G 0.08 TCGA-D8-A1J8-01 6 31930342 31930342 C T SKIV2L Silent p.I397I 0.78 TCGA-D8-A1J8-01 6 33245857 33245857 G T B3GALT4 Nonsense_Mutation p.E221* 0.32 TCGA-D8-A1J8-01 6 35923189 35923189 C T SLC26A8 Missense_Mutation p.E658K 0.69 tolerated(0.13) possibly_damaging(0.608) TCGA-D8-A1J8-01 6 37450989 37450989 C T CCDC167 Silent p.T89T 0.08 TCGA-D8-A1J8-01 6 37611585 37611585 C T MDGA1 Missense_Mutation p.G846S 0.70 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 6 39034028 39034028 C T GLP1R Missense_Mutation p.A153V 0.05 deleterious(0.05) benign(0.328) TCGA-D8-A1J8-01 6 39874156 39874156 G A MOCS1 3'UTR 0.19 TCGA-D8-A1J8-01 6 4037711 4037713 GAA - PRPF4B In_Frame_Del p.R442del 0.61 TCGA-D8-A1J8-01 6 41652769 41652769 C T TFEB Silent p.P333P 0.53 TCGA-D8-A1J8-01 6 43109509 43109509 C T PTK7 Silent p.N582N 0.18 TCGA-D8-A1J8-01 6 43306449 43306449 C G ZNF318 Missense_Mutation p.E1763Q 0.70 possibly_damaging(0.53) TCGA-D8-A1J8-01 6 46293276 46293276 G C RCAN2 Intron 0.67 TCGA-D8-A1J8-01 6 46761307 46761307 G C MEP1A Missense_Mutation p.E30Q 0.08 tolerated(0.47) benign(0.005) TCGA-D8-A1J8-01 6 49989664 49989664 A - DEFB110 5'UTR 0.37 TCGA-D8-A1J8-01 6 52883203 52883203 G C ICK Silent p.L196L 0.75 TCGA-D8-A1J8-01 6 6007079 6007079 C T NRN1 5'UTR 0.12 TCGA-D8-A1J8-01 6 74189797 74189797 G C MTO1 Missense_Mutation p.E359D 0.73 tolerated(0.21) possibly_damaging(0.615) TCGA-D8-A1J8-01 6 74189825 74189825 G C MTO1 Missense_Mutation p.E369Q 0.74 deleterious(0.03) probably_damaging(0.982) TCGA-D8-A1J8-01 6 7883486 7883486 G A TXNDC5 Missense_Mutation p.P397L 0.24 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 6 79725353 79725353 G C PHIP Silent p.V461V 0.69 TCGA-D8-A1J8-01 6 99849343 99849343 T - PNISR Frame_Shift_Del p.E498Sfs*85 0.29 TCGA-D8-A1J8-01 6 99956518 99956518 C G USP45 Missense_Mutation p.D81H 0.68 deleterious(0) probably_damaging(0.992) TCGA-D8-A1J8-01 7 100054424 100054425 - G C7orf61 Frame_Shift_Ins p.R191Pfs*24 0.26 TCGA-D8-A1J8-01 7 100192158 100192158 G A FBXO24 Missense_Mutation p.V354I 0.16 tolerated(1) benign(0) TCGA-D8-A1J8-01 7 100282432 100282432 C T GIGYF1 Missense_Mutation p.R459H 0.38 deleterious(0.02) unknown(0) TCGA-D8-A1J8-01 7 100336212 100336212 G C ZAN Missense_Mutation p.D248H 0.48 possibly_damaging(0.904) TCGA-D8-A1J8-01 7 100681242 100681242 C G MUC17 Nonsense_Mutation p.S2182* 0.34 TCGA-D8-A1J8-01 7 100803998 100803998 C G AP1S1 3'UTR 0.50 TCGA-D8-A1J8-01 7 101758493 101758493 A - CUX1 Frame_Shift_Del p.T218Lfs*8 0.25 TCGA-D8-A1J8-01 7 11464450 11464450 C T THSD7A Missense_Mutation p.E1086K 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-D8-A1J8-01 7 116557789 116557789 C T CAPZA2 Silent p.I243I 0.37 TCGA-D8-A1J8-01 7 120607994 120607994 G A ING3 Missense_Mutation p.R188Q 0.23 tolerated(0.2) probably_damaging(0.945) TCGA-D8-A1J8-01 7 121985736 121985736 C G CADPS2 Splice_Site p.X1169_splice 0.37 TCGA-D8-A1J8-01 7 122111514 122111514 C A CADPS2 Nonsense_Mutation p.E701* 0.35 TCGA-D8-A1J8-01 7 127011688 127011688 G C ZNF800 3'UTR 0.24 TCGA-D8-A1J8-01 7 1275500 1275500 G A UNCX Silent p.R161R 0.24 TCGA-D8-A1J8-01 7 127975956 127975956 C T RBM28 Missense_Mutation p.E252K 0.32 tolerated(0.21) benign(0.08) TCGA-D8-A1J8-01 7 128483472 128483472 C T FLNC Silent p.V884V 0.24 TCGA-D8-A1J8-01 7 129680797 129680797 C G ZC3HC1 Missense_Mutation p.D135H 0.38 deleterious(0.04) benign(0.065) TCGA-D8-A1J8-01 7 130025744 130025744 G A CPA1 Missense_Mutation p.G351D 0.37 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 7 130044478 130044478 C T CEP41 Missense_Mutation p.E117K 0.35 tolerated(0.53) benign(0.044) TCGA-D8-A1J8-01 7 131189073 131189073 G T PODXL Silent p.L558L 0.38 TCGA-D8-A1J8-01 7 134819798 134819798 G A AGBL3 Missense_Mutation p.E850K 0.31 tolerated_low_confidence(0.74) benign(0.003) TCGA-D8-A1J8-01 7 135082944 135082944 C A CNOT4 Missense_Mutation p.G286W 0.34 tolerated(0.17) possibly_damaging(0.719) TCGA-D8-A1J8-01 7 135272692 135272692 C G NUP205 Missense_Mutation p.I475M 0.29 tolerated(0.29) benign(0.182) TCGA-D8-A1J8-01 7 136700871 136700871 C G CHRM2 Missense_Mutation p.T420S 0.28 tolerated(0.48) benign(0.223) TCGA-D8-A1J8-01 7 136700905 136700905 C G CHRM2 Missense_Mutation p.I431M 0.26 deleterious(0) probably_damaging(0.972) TCGA-D8-A1J8-01 7 137761197 137761197 C A AKR1D1 5'Flank 0.08 TCGA-D8-A1J8-01 7 138269670 138269670 A G TRIM24 Missense_Mutation p.I1043V 0.36 tolerated(0.54) benign(0.004) TCGA-D8-A1J8-01 7 139281600 139281600 G A HIPK2 Silent p.G860G 0.37 TCGA-D8-A1J8-01 7 140301456 140301456 C G DENND2A Missense_Mutation p.E248Q 0.20 deleterious(0.01) possibly_damaging(0.877) TCGA-D8-A1J8-01 7 141755406 141755406 C T MGAM Silent p.R1121R 0.40 TCGA-D8-A1J8-01 7 142206973 142206973 G A TRBV10-2 5'UTR 0.51 TCGA-D8-A1J8-01 7 142334807 142334807 G A TRBV20-1 Missense_Mutation p.E77K 0.30 tolerated(0.71) benign(0) TCGA-D8-A1J8-01 7 148947404 148947404 C T ZNF212 Missense_Mutation p.A60V 0.16 tolerated(0.06) probably_damaging(0.926) TCGA-D8-A1J8-01 7 149129710 149129710 G A ZNF777 Silent p.C551C 0.10 TCGA-D8-A1J8-01 7 149427568 149427568 C G KRBA1 Missense_Mutation p.P685A 0.30 deleterious(0.02) probably_damaging(0.981) TCGA-D8-A1J8-01 7 150490276 150490276 G C TMEM176B Nonsense_Mutation p.S167* 0.36 TCGA-D8-A1J8-01 7 150937602 150937602 C A SMARCD3 Missense_Mutation p.D316Y 0.26 deleterious(0.01) possibly_damaging(0.793) TCGA-D8-A1J8-01 7 151860545 151860554 CATTTGAGAC - KMT2C Frame_Shift_Del p.V3370Qfs*11 0.27 TCGA-D8-A1J8-01 7 158715127 158715127 C A WDR60 Missense_Mutation p.H661N 0.31 deleterious(0) benign(0.403) TCGA-D8-A1J8-01 7 19156620 19156620 G A TWIST1 Nonsense_Mutation p.Q109* 0.22 TCGA-D8-A1J8-01 7 21847542 21847542 C G DNAH11 Missense_Mutation p.Q3410E 0.38 possibly_damaging(0.805) TCGA-D8-A1J8-01 7 25266492 25266492 C G NPVF Missense_Mutation p.E98Q 0.35 deleterious(0.02) possibly_damaging(0.755) TCGA-D8-A1J8-01 7 2625866 2625866 C T IQCE Silent p.G283G 0.27 TCGA-D8-A1J8-01 7 27185514 27185514 C T HOXA6 Silent p.G155G 0.07 TCGA-D8-A1J8-01 7 27203249 27203249 G A HOXA9 Silent p.I264I 0.34 TCGA-D8-A1J8-01 7 32588492 32588492 G A AVL9 Missense_Mutation p.E112K 0.32 tolerated(0.13) possibly_damaging(0.856) TCGA-D8-A1J8-01 7 32908995 32908995 C G KBTBD2 Missense_Mutation p.E612Q 0.38 tolerated_low_confidence(0.09) benign(0.064) TCGA-D8-A1J8-01 7 33388707 33388707 C G BBS9 Missense_Mutation p.Q453E 0.37 tolerated(0.25) benign(0.009) TCGA-D8-A1J8-01 7 38725659 38725659 C T FAM183B 5'UTR 0.39 TCGA-D8-A1J8-01 7 43982534 43982534 C T UBE2D4 Intron 0.30 TCGA-D8-A1J8-01 7 43982582 43982582 C T UBE2D4 Silent p.F50F 0.28 TCGA-D8-A1J8-01 7 44571371 44571371 C G NPC1L1 Missense_Mutation p.E874Q 0.29 tolerated(0.1) benign(0.072) TCGA-D8-A1J8-01 7 44621710 44621710 G C TMED4 Missense_Mutation p.F32L 0.33 tolerated(0.09) possibly_damaging(0.766) TCGA-D8-A1J8-01 7 45144233 45144233 G A TBRG4 Missense_Mutation p.R271W 0.23 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 7 48313842 48313842 C T ABCA13 Silent p.L1527L 0.32 TCGA-D8-A1J8-01 7 51261261 51261261 C T COBL Missense_Mutation p.E91K 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-D8-A1J8-01 7 64466983 64466983 G A ERV3-1 5'UTR 0.35 TCGA-D8-A1J8-01 7 6550320 6550320 C T GRID2IP Missense_Mutation p.E525K 0.47 deleterious(0.01) benign(0.25) TCGA-D8-A1J8-01 7 6730725 6730725 C G ZNF12 Missense_Mutation p.Q616H 0.36 tolerated(0.44) probably_damaging(0.972) TCGA-D8-A1J8-01 7 6859417 6859417 G T CCZ1B Silent p.L226L 0.38 TCGA-D8-A1J8-01 7 72470029 72470029 T A STAG3L3 RNA 0.22 TCGA-D8-A1J8-01 7 73118812 73118812 C T STX1A Intron 0.23 TCGA-D8-A1J8-01 7 80374310 80374310 C T SEMA3C Missense_Mutation p.G719E 0.26 tolerated(1) benign(0.001) TCGA-D8-A1J8-01 7 83764203 83764203 G T SEMA3A Silent p.T59T 0.25 TCGA-D8-A1J8-01 7 86978480 86978480 A - CROT Frame_Shift_Del p.K34Nfs*13 0.23 TCGA-D8-A1J8-01 7 88956723 88956724 - A ZNF804B Frame_Shift_Ins p.Q108Tfs*6 0.27 TCGA-D8-A1J8-01 7 89933286 89933287 - A C7orf63 Frame_Shift_Ins p.P688Tfs*5 0.34 TCGA-D8-A1J8-01 7 91641902 91641902 G C AKAP9 Missense_Mutation p.E1160Q 0.41 probably_damaging(0.994) TCGA-D8-A1J8-01 7 91843945 91843945 T - KRIT1 Frame_Shift_Del p.K570Nfs*7 0.34 TCGA-D8-A1J8-01 7 92404027 92404027 G A CDK6 Missense_Mutation p.P118S 0.31 tolerated(0.4) probably_damaging(0.998) TCGA-D8-A1J8-01 7 92733848 92733848 G A SAMD9 Silent p.V521V 0.27 TCGA-D8-A1J8-01 7 94539589 94539589 G - PPP1R9A Frame_Shift_Del p.R57Gfs*44 0.35 TCGA-D8-A1J8-01 7 94935641 94935641 G A PON1 Missense_Mutation p.H246Y 0.29 tolerated(0.1) probably_damaging(0.971) TCGA-D8-A1J8-01 7 95157266 95157266 C - ASB4 Frame_Shift_Del p.L212Wfs*59 0.23 TCGA-D8-A1J8-01 7 99032720 99032720 G A ATP5J2-PTCD1 Missense_Mutation p.S98F 0.24 tolerated(0.13) benign(0.077) TCGA-D8-A1J8-01 7 99999515 99999515 G A ZCWPW1 Missense_Mutation p.P541S 0.31 tolerated(0.06) benign(0.266) TCGA-D8-A1J8-01 8 10390543 10390543 C T PRSS55 Silent p.S242S 0.15 TCGA-D8-A1J8-01 8 110655102 110655102 C G SYBU Missense_Mutation p.L28F 0.70 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A1J8-01 8 128429115 128429115 C G POU5F1B Nonsense_Mutation p.S335* 0.54 TCGA-D8-A1J8-01 8 12878609 12878609 G A KIAA1456 Missense_Mutation p.V141I 0.55 deleterious(0) probably_damaging(0.959) TCGA-D8-A1J8-01 8 144800433 144800433 G C MAPK15 Missense_Mutation p.E83Q 0.77 tolerated(0.64) benign(0.281) TCGA-D8-A1J8-01 8 145615938 145615938 G A ADCK5 Missense_Mutation p.V112M 0.46 tolerated(0.12) benign(0.043) TCGA-D8-A1J8-01 8 145625827 145625827 C T CPSF1 Silent p.Q249Q 0.54 TCGA-D8-A1J8-01 8 2017432 2017432 T G MYOM2 Missense_Mutation p.V230G 0.60 deleterious(0.01) possibly_damaging(0.745) TCGA-D8-A1J8-01 8 21996295 21996295 C T REEP4 Missense_Mutation p.G189R 0.54 tolerated(0.19) benign(0.006) TCGA-D8-A1J8-01 8 24259557 24259557 G A ADAMDEC1 Silent p.G424G 0.57 TCGA-D8-A1J8-01 8 27593640 27593640 G A CCDC25 3'UTR 0.05 TCGA-D8-A1J8-01 8 28635395 28635395 T C INTS9 Missense_Mutation p.D449G 0.16 deleterious(0) possibly_damaging(0.637) TCGA-D8-A1J8-01 8 37630348 37630348 G C PROSC Missense_Mutation p.R132T 0.52 tolerated(0.07) benign(0.016) TCGA-D8-A1J8-01 8 59498560 59498560 C G NSMAF Splice_Site p.X847_splice 0.49 TCGA-D8-A1J8-01 8 61139430 61139430 A G CA8 Splice_Site p.X192_splice 0.09 TCGA-D8-A1J8-01 8 67578719 67578719 C G VCPIP1 Missense_Mutation p.D159H 0.59 deleterious(0) probably_damaging(0.995) TCGA-D8-A1J8-01 8 67786699 67786699 A - MCMDC2 Intron 0.14 TCGA-D8-A1J8-01 8 68087602 68087602 C T CSPP1 Nonsense_Mutation p.Q1009* 0.41 TCGA-D8-A1J8-01 8 76456180 76456180 C T HNF4G Missense_Mutation p.R75C 0.57 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 8 95523890 95523890 C T KIAA1429 Silent p.T971T 0.41 TCGA-D8-A1J8-01 8 99560270 99560270 C T STK3 Silent p.T384T 0.64 TCGA-D8-A1J8-01 9 100056342 100056342 C T CCDC180 5'UTR 0.33 TCGA-D8-A1J8-01 9 100407414 100407414 G A NCBP1 Missense_Mutation p.D133N 0.04 deleterious(0.05) probably_damaging(1) TCGA-D8-A1J8-01 9 100862276 100862276 C T TRIM14 Missense_Mutation p.M158I 0.30 tolerated(0.45) benign(0) TCGA-D8-A1J8-01 9 102722234 102722234 C G STX17 Missense_Mutation p.Q151E 0.05 tolerated(0.54) benign(0.002) TCGA-D8-A1J8-01 9 104238342 104238342 G A TMEM246 Missense_Mutation p.R345C 0.36 tolerated(0.18) possibly_damaging(0.55) TCGA-D8-A1J8-01 9 111625579 111625579 C G ACTL7A Missense_Mutation p.S326C 0.44 deleterious(0.03) probably_damaging(0.941) TCGA-D8-A1J8-01 9 112168784 112168784 C G PTPN3 Missense_Mutation p.E584Q 0.29 deleterious(0) probably_damaging(0.982) TCGA-D8-A1J8-01 9 113449439 113449439 C G MUSK Silent p.L83L 0.35 TCGA-D8-A1J8-01 9 114548233 114548233 A G C9orf84 5'UTR 0.35 TCGA-D8-A1J8-01 9 115232817 115232817 G C HSDL2 Missense_Mutation p.R417T 0.42 deleterious(0) benign(0.131) TCGA-D8-A1J8-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.32 TCGA-D8-A1J8-01 9 117228550 117228550 G C DFNB31 Silent p.L320L 0.33 TCGA-D8-A1J8-01 9 118973980 118973980 G A PAPPA Missense_Mutation p.E563K 0.39 deleterious(0) benign(0.027) TCGA-D8-A1J8-01 9 120476501 120476504 GGGG AGGGT TLR4 Frame_Shift_Ins p.G699Rfs*27 0.20 TCGA-D8-A1J8-01 9 121976415 121976415 G A BRINP1 Missense_Mutation p.P235L 0.36 deleterious(0) probably_damaging(0.981) TCGA-D8-A1J8-01 9 123298718 123298718 C T CDK5RAP2 Silent p.K198K 0.37 TCGA-D8-A1J8-01 9 130111209 130111209 G A GARNL3 Missense_Mutation p.E480K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1J8-01 9 130649801 130649801 G A ST6GALNAC6 Silent p.H258H 0.25 TCGA-D8-A1J8-01 9 130697972 130697972 G A DPM2 3'UTR 0.25 TCGA-D8-A1J8-01 9 131669651 131669651 C A LRRC8A Silent p.R70R 0.38 TCGA-D8-A1J8-01 9 13176326 13176326 C A MPDZ Nonsense_Mutation p.E914* 0.42 TCGA-D8-A1J8-01 9 135374895 135374895 C G C9orf171 Silent p.L180L 0.19 TCGA-D8-A1J8-01 9 135534114 135534114 G C DDX31 Missense_Mutation p.L283V 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-D8-A1J8-01 9 135919260 135919260 C A GTF3C5 Missense_Mutation p.F173L 0.41 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J8-01 9 136901437 136901437 C T BRD3 Silent p.K551K 0.35 TCGA-D8-A1J8-01 9 137660308 137660308 C T COL5A1 Missense_Mutation p.P762L 0.12 benign(0.133) TCGA-D8-A1J8-01 9 139306606 139306606 C T PMPCA Missense_Mutation p.R77C 0.36 deleterious(0) probably_damaging(0.988) TCGA-D8-A1J8-01 9 139697137 139697137 G C CCDC183 Missense_Mutation p.E189Q 0.35 tolerated(0.53) benign(0.023) TCGA-D8-A1J8-01 9 15175073 15175073 A G TTC39B Silent p.S634S 0.36 TCGA-D8-A1J8-01 9 21186980 21186981 - T IFNA4 Frame_Shift_Ins p.R184Kfs*15 0.14 TCGA-D8-A1J8-01 9 2811363 2811363 C G KIAA0020 Missense_Mutation p.E545Q 0.38 tolerated(0.64) benign(0.072) TCGA-D8-A1J8-01 9 32631138 32631138 C T TAF1L Silent p.G1480G 0.05 TCGA-D8-A1J8-01 9 32632013 32632013 T A TAF1L Missense_Mutation p.T1189S 0.28 tolerated(0.06) benign(0.22) TCGA-D8-A1J8-01 9 35105706 35105706 C T FAM214B Missense_Mutation p.R479H 0.32 deleterious(0.01) probably_damaging(0.938) TCGA-D8-A1J8-01 9 35237784 35237784 C T UNC13B Missense_Mutation p.H119Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-D8-A1J8-01 9 35679912 35679912 G A CA9 Missense_Mutation p.R376Q 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A1J8-01 9 35740587 35740587 A G GBA2 Silent p.P355P 0.05 TCGA-D8-A1J8-01 9 37744937 37744937 C G FRMPD1 Missense_Mutation p.H970D 0.28 tolerated(0.07) benign(0.118) TCGA-D8-A1J8-01 9 40773227 40773227 C T ZNF658 Missense_Mutation p.R683K 0.32 deleterious(0.03) benign(0) TCGA-D8-A1J8-01 9 40773922 40773922 C G ZNF658 Missense_Mutation p.Q451H 0.34 deleterious(0.03) possibly_damaging(0.694) TCGA-D8-A1J8-01 9 5300362 5300362 C T RLN2 Silent p.L98L 0.29 TCGA-D8-A1J8-01 9 6644693 6644693 C T GLDC Splice_Site p.X86_splice 0.36 TCGA-D8-A1J8-01 9 72131547 72131547 G A APBA1 Nonsense_Mutation p.Q194* 0.33 TCGA-D8-A1J8-01 9 77377431 77377431 G A TRPM6 Missense_Mutation p.H1386Y 0.48 deleterious_low_confidence(0.01) benign(0.445) TCGA-D8-A1J8-01 9 79836219 79836219 A - VPS13A Frame_Shift_Del p.K372Sfs*2 0.32 TCGA-D8-A1J8-01 9 79898501 79898501 G C VPS13A Missense_Mutation p.E1092Q 0.37 tolerated(0.14) benign(0.282) TCGA-D8-A1J8-01 9 84562818 84562818 G C RP11-383M4.6 Intron 0.23 TCGA-D8-A1J8-01 9 84608240 84608240 C G SPATA31D1 Missense_Mutation p.S952C 0.31 deleterious(0.01) probably_damaging(0.956) TCGA-D8-A1J8-01 9 85637276 85637276 G A RASEF Missense_Mutation p.A215V 0.04 deleterious(0.03) probably_damaging(0.998) TCGA-D8-A1J8-01 9 87342753 87342753 C T NTRK2 Silent p.L346L 0.19 TCGA-D8-A1J8-01 9 90502987 90502987 G A SPATA31E1 Silent p.Q1195Q 0.31 TCGA-D8-A1J8-01 9 90503538 90503538 C T SPATA31E1 Missense_Mutation p.P1379L 0.26 tolerated(0.07) benign(0.234) TCGA-D8-A1J8-01 9 91617141 91617141 C T S1PR3 Silent p.S342S 0.33 TCGA-D8-A1J8-01 9 91961852 91961852 C T SECISBP2 Silent p.R497R 0.06 TCGA-D8-A1J8-01 9 95025286 95025286 G A IARS Silent p.F584F 0.34 TCGA-D8-A1J8-01 9 96439925 96439925 G A PHF2 Silent p.L1086L 0.32 TCGA-D8-A1J8-01 9 97080989 97080989 G A NUTM2F Nonsense_Mutation p.Q677* 0.34 TCGA-D8-A1J8-01 9 97088185 97088185 C T NUTM2F Silent p.V16V 0.40 TCGA-D8-A1J8-01 9 98209244 98209244 G A PTCH1 Silent p.L1432L 0.42 TCGA-D8-A1J8-01 X 100871481 100871481 C G ARMCX6 Missense_Mutation p.E44Q 0.53 tolerated(0.38) benign(0.248) TCGA-D8-A1J8-01 X 104440363 104440363 G C IL1RAPL2 Missense_Mutation p.E97Q 0.47 deleterious(0) probably_damaging(0.952) TCGA-D8-A1J8-01 X 106065207 106065207 G A TBC1D8B Missense_Mutation p.G121R 0.43 deleterious(0) probably_damaging(0.933) TCGA-D8-A1J8-01 X 108926090 108926090 A G ACSL4 Silent p.L129L 0.49 TCGA-D8-A1J8-01 X 114400488 114400488 G C LRCH2 Missense_Mutation p.H372D 0.52 tolerated(0.17) probably_damaging(0.997) TCGA-D8-A1J8-01 X 114540869 114540869 G A LUZP4 Missense_Mutation p.E148K 0.56 tolerated(0.3) benign(0.021) TCGA-D8-A1J8-01 X 11682550 11682550 C G ARHGAP6 Missense_Mutation p.K133N 0.40 deleterious_low_confidence(0.04) benign(0.122) TCGA-D8-A1J8-01 X 118975147 118975147 C T UPF3B Silent p.R233R 0.53 TCGA-D8-A1J8-01 X 118975176 118975176 C G UPF3B Missense_Mutation p.E224Q 0.51 deleterious(0.02) possibly_damaging(0.786) TCGA-D8-A1J8-01 X 129162818 129162818 C T BCORL1 Silent p.T1429T 0.44 TCGA-D8-A1J8-01 X 130222630 130222630 C T ARHGAP36 Silent p.S505S 0.42 TCGA-D8-A1J8-01 X 135433683 135433683 G C GPR112 Missense_Mutation p.E2269Q 0.06 deleterious(0) benign(0.307) TCGA-D8-A1J8-01 X 151143147 151143147 C A GABRE 5'UTR 0.25 TCGA-D8-A1J8-01 X 151336964 151336964 G C GABRA3 Missense_Mutation p.I405M 0.55 tolerated(0.22) benign(0.016) TCGA-D8-A1J8-01 X 151899798 151899798 G C MAGEA12 3'UTR 0.61 TCGA-D8-A1J8-01 X 152226242 152226242 G C PNMA3 Missense_Mutation p.R277T 0.46 deleterious(0) benign(0.007) TCGA-D8-A1J8-01 X 152612505 152612505 G C ZNF275 Missense_Mutation p.R121T 0.68 deleterious(0) possibly_damaging(0.755) TCGA-D8-A1J8-01 X 152969538 152969538 C T BCAP31 Missense_Mutation p.R185H 0.46 deleterious(0) probably_damaging(0.993) TCGA-D8-A1J8-01 X 153047644 153047644 C A SRPK3 Silent p.I152I 0.45 TCGA-D8-A1J8-01 X 153760987 153760987 G A G6PD Missense_Mutation p.A391V 0.68 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J8-01 X 154563718 154563718 C T CLIC2 Missense_Mutation p.G7S 0.42 tolerated(0.27) benign(0) TCGA-D8-A1J8-01 X 2343245 2343245 A G DHRSX Silent p.V70V 0.06 TCGA-D8-A1J8-01 X 2343248 2343248 A G DHRSX Silent p.H69H 0.38 TCGA-D8-A1J8-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.11 TCGA-D8-A1J8-01 X 34149897 34149897 C T FAM47A Missense_Mutation p.E167K 0.56 deleterious(0.01) probably_damaging(0.969) TCGA-D8-A1J8-01 X 35993898 35993898 C T CXorf22 Nonsense_Mutation p.R861* 0.60 TCGA-D8-A1J8-01 X 49107846 49107846 C T FOXP3 Silent p.K415K 0.58 TCGA-D8-A1J8-01 X 53106178 53106178 C T GPR173 Silent p.I125I 0.43 TCGA-D8-A1J8-01 X 53224232 53224232 C G KDM5C Missense_Mutation p.D1107H 0.54 deleterious(0.02) benign(0.043) TCGA-D8-A1J8-01 X 53276254 53276254 G A IQSEC2 Silent p.F882F 0.47 TCGA-D8-A1J8-01 X 65415033 65415033 T C HEPH Missense_Mutation p.F542S 0.22 tolerated(0.51) benign(0.264) TCGA-D8-A1J8-01 X 69478418 69478418 G - P2RY4 Frame_Shift_Del p.Q353Rfs*31 0.38 TCGA-D8-A1J8-01 X 73963149 73963149 C T KIAA2022 Missense_Mutation p.G415R 0.05 deleterious(0.03) possibly_damaging(0.629) TCGA-D8-A1J8-01 X 96502794 96502794 C T DIAPH2 Missense_Mutation p.P934S 0.06 tolerated(0.07) possibly_damaging(0.72) TCGA-D8-A1J8-01 X 99854787 99854787 C T TNMD 3'UTR 0.62 TCGA-D8-A1J9-01 10 105176260 105176260 G C PDCD11 Missense_Mutation p.D511H 0.33 tolerated(0.09) possibly_damaging(0.89) TCGA-D8-A1J9-01 10 115986858 115986858 C G TDRD1 Missense_Mutation p.S1068C 0.30 deleterious(0.01) probably_damaging(0.938) TCGA-D8-A1J9-01 10 134218224 134218224 G A PWWP2B Missense_Mutation p.D74N 0.26 tolerated(0.25) benign(0.001) TCGA-D8-A1J9-01 10 135340993 135340993 C G CYP2E1 Missense_Mutation p.L32V 0.33 deleterious(0) probably_damaging(0.996) TCGA-D8-A1J9-01 10 17373434 17373434 C A ST8SIA6 Missense_Mutation p.K165N 0.06 tolerated(0.52) benign(0.016) TCGA-D8-A1J9-01 10 25010846 25010846 A G ARHGAP21 5'UTR 0.30 TCGA-D8-A1J9-01 10 27356123 27356123 C A ANKRD26 Missense_Mutation p.L390F 0.06 deleterious(0.05) possibly_damaging(0.778) TCGA-D8-A1J9-01 10 37486234 37486234 C A ANKRD30A Missense_Mutation p.F824L 0.03 tolerated(1) possibly_damaging(0.827) TCGA-D8-A1J9-01 10 70728802 70728802 G C DDX21 Missense_Mutation p.K387N 0.06 deleterious(0.04) benign(0.334) TCGA-D8-A1J9-01 10 73466731 73466731 G A C10orf105 3'Flank 0.13 TCGA-D8-A1J9-01 10 75557294 75557294 C T ZSWIM8 Missense_Mutation p.S1198L 0.33 tolerated(0.07) probably_damaging(0.99) TCGA-D8-A1J9-01 11 100061971 100061971 C T CNTN5 Missense_Mutation p.S565L 0.56 tolerated(0.17) benign(0.16) TCGA-D8-A1J9-01 11 108124566 108124566 G A ATM Missense_Mutation p.E642K 0.71 tolerated(0.09) benign(0.011) TCGA-D8-A1J9-01 11 118220523 118220523 G A CD3G Missense_Mutation p.E49K 0.11 tolerated(1) benign(0) TCGA-D8-A1J9-01 11 60697991 60697991 G A TMEM132A Silent p.V292V 0.14 TCGA-D8-A1J9-01 11 64812147 64812147 T C SAC3D1 Missense_Mutation p.V342A 0.08 deleterious(0.04) benign(0.011) TCGA-D8-A1J9-01 11 65113788 65113788 C T DPF2 Silent p.I325I 0.28 TCGA-D8-A1J9-01 11 66360198 66360198 C T CCDC87 Missense_Mutation p.E97K 0.28 deleterious(0.01) possibly_damaging(0.537) TCGA-D8-A1J9-01 11 66373005 66373005 G T CCS Missense_Mutation p.D205Y 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-D8-A1J9-01 11 71819713 71819713 G A LRTOMT Silent p.L206L 0.24 TCGA-D8-A1J9-01 11 8933999 8933999 G C AKIP1 Splice_Site p.X75_splice 0.07 TCGA-D8-A1J9-01 12 100657603 100657603 C G DEPDC4 Missense_Mutation p.E76Q 0.14 deleterious(0) probably_damaging(0.943) TCGA-D8-A1J9-01 12 105440687 105440687 C G ALDH1L2 Missense_Mutation p.E583Q 0.30 deleterious(0) probably_damaging(0.98) TCGA-D8-A1J9-01 12 114804130 114804130 G A TBX5 Silent p.F274F 0.33 TCGA-D8-A1J9-01 12 121613210 121613210 G T P2RX7 Nonsense_Mutation p.E301* 0.05 TCGA-D8-A1J9-01 12 122825432 122825432 G C CLIP1 Silent p.L773L 0.38 TCGA-D8-A1J9-01 12 12339980 12339980 C T LRP6 Missense_Mutation p.D241N 0.07 deleterious(0) probably_damaging(1) TCGA-D8-A1J9-01 12 13716151 13716151 C G GRIN2B Missense_Mutation p.E1341Q 0.28 tolerated(0.1) probably_damaging(0.961) TCGA-D8-A1J9-01 12 14614037 14614037 G A ATF7IP Missense_Mutation p.E923K 0.32 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1J9-01 12 14688722 14688722 C T PLBD1 Missense_Mutation p.E239K 0.33 deleterious(0.01) probably_damaging(1) TCGA-D8-A1J9-01 12 21033899 21033899 A T SLCO1B3 Missense_Mutation p.Y481F 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A1J9-01 12 21467590 21467590 C T SLCO1A2 Silent p.V76V 0.07 TCGA-D8-A1J9-01 12 40013178 40013178 C A ABCD2 Silent p.V80V 0.05 TCGA-D8-A1J9-01 12 4853841 4853841 G T GALNT8 Missense_Mutation p.A279S 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A1J9-01 12 52082602 52082602 G A SCN8A Silent p.L225L 0.35 TCGA-D8-A1J9-01 12 54911675 54911675 C G NCKAP1L Missense_Mutation p.Q431E 0.05 deleterious(0) possibly_damaging(0.759) TCGA-D8-A1J9-01 12 57030089 57030089 C T BAZ2A 5'UTR 0.68 TCGA-D8-A1J9-01 12 57626568 57626568 C G SHMT2 Missense_Mutation p.P267A 0.16 deleterious(0) probably_damaging(1) TCGA-D8-A1J9-01 12 57920417 57920417 G A MBD6 Missense_Mutation p.E497K 0.30 tolerated_low_confidence(0.07) unknown(0) TCGA-D8-A1J9-01 13 36141126 36141126 T A NBEA Missense_Mutation p.L2336H 0.10 deleterious(0) possibly_damaging(0.618) TCGA-D8-A1J9-01 13 46549898 46549898 C T ZC3H13 Missense_Mutation p.R663Q 0.07 unknown(0) TCGA-D8-A1J9-01 14 105175628 105175628 G A INF2 Missense_Mutation p.E654K 0.37 deleterious(0) unknown(0) TCGA-D8-A1J9-01 14 51194219 51194219 C G NIN Intron 0.30 TCGA-D8-A1J9-01 14 51219447 51219447 G A NIN Missense_Mutation p.S1580L 0.40 tolerated(0.13) benign(0.032) TCGA-D8-A1J9-01 14 51233599 51233599 G T NIN Missense_Mutation p.R482S 0.37 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J9-01 14 51376618 51376618 C G PYGL Missense_Mutation p.K724N 0.41 tolerated(0.36) benign(0.004) TCGA-D8-A1J9-01 14 73729310 73729310 C A PAPLN Missense_Mutation p.A806E 0.35 tolerated(0.55) benign(0.098) TCGA-D8-A1J9-01 14 77492022 77492022 G A IRF2BPL Missense_Mutation p.S705F 0.12 deleterious(0) unknown(0) TCGA-D8-A1J9-01 14 92083994 92083994 C T CATSPERB Missense_Mutation p.D783N 0.38 tolerated(0.25) benign(0.027) TCGA-D8-A1J9-01 14 94517397 94517397 C G DDX24 3'UTR 0.39 TCGA-D8-A1J9-01 15 63569883 63569884 TA - APH1B Frame_Shift_Del p.Y21Cfs*40 0.27 TCGA-D8-A1J9-01 15 63958297 63958297 C T HERC1 Missense_Mutation p.M2792I 0.44 probably_damaging(0.943) TCGA-D8-A1J9-01 15 74244250 74244250 G A LOXL1 3'UTR 0.38 TCGA-D8-A1J9-01 15 75129542 75129542 C T ULK3 3'UTR 0.47 TCGA-D8-A1J9-01 15 76225523 76225523 C G FBXO22 3'UTR 0.33 TCGA-D8-A1J9-01 15 78390773 78390773 G C SH2D7 Missense_Mutation p.Q160H 0.13 tolerated(0.16) benign(0.026) TCGA-D8-A1J9-01 15 83931995 83931995 C T BNC1 Missense_Mutation p.D670N 0.23 tolerated(0.16) benign(0.036) TCGA-D8-A1J9-01 15 91482977 91482977 C T UNC45A Missense_Mutation p.S148L 0.07 deleterious(0.03) possibly_damaging(0.716) TCGA-D8-A1J9-01 15 91524990 91524990 C T PRC1 Silent p.L163L 0.05 TCGA-D8-A1J9-01 16 1570261 1570261 G A IFT140 Silent p.I1248I 0.23 TCGA-D8-A1J9-01 16 24921688 24921688 C T SLC5A11 Missense_Mutation p.P571L 0.37 tolerated(0.43) benign(0.002) TCGA-D8-A1J9-01 16 25268386 25268386 C T ZKSCAN2 Missense_Mutation p.M21I 0.15 deleterious(0.03) benign(0.02) TCGA-D8-A1J9-01 16 27238062 27238062 G A NSMCE1 Silent p.I193I 0.18 TCGA-D8-A1J9-01 16 28507855 28507855 G C APOBR Missense_Mutation p.R498T 0.33 deleterious(0.05) benign(0.402) TCGA-D8-A1J9-01 16 30369766 30369766 G C TBC1D10B Missense_Mutation p.I642M 0.37 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-D8-A1J9-01 16 31049455 31049455 G A STX4 Missense_Mutation p.D170N 0.15 tolerated(0.36) possibly_damaging(0.884) TCGA-D8-A1J9-01 16 31049458 31049458 G A STX4 Missense_Mutation p.E171K 0.15 deleterious(0) probably_damaging(0.962) TCGA-D8-A1J9-01 16 4908649 4908649 C T UBN1 Silent p.I139I 0.07 TCGA-D8-A1J9-01 16 66946466 66946466 C A CDH16 Nonsense_Mutation p.E434* 0.49 TCGA-D8-A1J9-01 16 70513502 70513502 C T FUK Silent p.I1058I 0.57 TCGA-D8-A1J9-01 16 74670451 74670451 G C RFWD3 Missense_Mutation p.Q407E 0.54 tolerated(0.48) benign(0.002) TCGA-D8-A1J9-01 16 82033756 82033756 G T SDR42E1 Missense_Mutation p.P48T 0.49 deleterious(0) probably_damaging(0.964) TCGA-D8-A1J9-01 16 844160 844160 C A CHTF18 Missense_Mutation p.H637N 0.28 deleterious(0.04) benign(0.218) TCGA-D8-A1J9-01 16 89882319 89882319 C A FANCA Missense_Mutation p.R52L 0.56 tolerated(0.06) benign(0.25) TCGA-D8-A1J9-01 16 9934583 9934583 G C GRIN2A Missense_Mutation p.F524L 0.19 deleterious(0) probably_damaging(0.992) TCGA-D8-A1J9-01 17 15508621 15508621 C T RP11-385D13.1 Missense_Mutation p.R760Q 0.47 tolerated_low_confidence(0.16) benign(0.008) TCGA-D8-A1J9-01 17 17965159 17965159 G A GID4 Missense_Mutation p.E237K 0.27 deleterious(0) probably_damaging(0.985) TCGA-D8-A1J9-01 17 17997277 17997277 C G DRG2 Missense_Mutation p.S72C 0.32 deleterious(0) probably_damaging(0.994) TCGA-D8-A1J9-01 17 27000441 27000441 G A SUPT6H Missense_Mutation p.E8K 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-D8-A1J9-01 17 29761087 29761087 G C RAB11FIP4 Missense_Mutation p.E95Q 0.20 tolerated(0.57) benign(0.011) TCGA-D8-A1J9-01 17 35597396 35597396 C G ACACA Missense_Mutation p.Q1039H 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-D8-A1J9-01 17 36966009 36966009 C A CWC25 Missense_Mutation p.K212N 0.62 deleterious(0.01) possibly_damaging(0.611) TCGA-D8-A1J9-01 17 37357484 37357484 G C RPL19 Missense_Mutation p.K8N 0.08 deleterious(0) probably_damaging(0.988) TCGA-D8-A1J9-01 17 37899229 37899229 G C GRB7 Missense_Mutation p.E152Q 0.15 tolerated(1) benign(0.047) TCGA-D8-A1J9-01 17 39680718 39680718 G A KRT19 Silent p.L245L 0.58 TCGA-D8-A1J9-01 17 40948000 40948000 G A WNK4 Missense_Mutation p.S1127N 0.57 deleterious(0) probably_damaging(0.993) TCGA-D8-A1J9-01 17 48551306 48551306 C T ACSF2 Missense_Mutation p.R557W 0.52 deleterious(0.02) probably_damaging(0.972) TCGA-D8-A1J9-01 17 5048769 5048769 C T USP6 Nonsense_Mutation p.Q688* 0.11 TCGA-D8-A1J9-01 17 72791152 72791152 G A TMEM104 Silent p.V143V 0.04 TCGA-D8-A1J9-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.54 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J9-01 17 79770714 79770714 C G GCGR Missense_Mutation p.L357V 0.25 deleterious(0.02) possibly_damaging(0.764) TCGA-D8-A1J9-01 18 21534680 21534680 C G LAMA3 3'UTR 0.36 TCGA-D8-A1J9-01 18 48255621 48255621 G A MAPK4 Silent p.A387A 0.35 TCGA-D8-A1J9-01 18 56587083 56587083 G T ZNF532 Missense_Mutation p.V522L 0.42 deleterious(0.04) benign(0.126) TCGA-D8-A1J9-01 18 56939737 56939737 C G RAX Missense_Mutation p.K133N 0.12 deleterious(0) probably_damaging(0.991) TCGA-D8-A1J9-01 18 56939769 56939769 C T RAX Missense_Mutation p.E123K 0.12 deleterious(0.05) benign(0.004) TCGA-D8-A1J9-01 19 12638670 12638670 G A ZNF564 Silent p.F84F 0.33 TCGA-D8-A1J9-01 19 14910378 14910378 C T OR7C1 Missense_Mutation p.D191N 0.37 tolerated_low_confidence(0.09) benign(0.17) TCGA-D8-A1J9-01 19 15338655 15338655 C T EPHX3 Missense_Mutation p.E262K 0.30 deleterious(0.02) benign(0.228) TCGA-D8-A1J9-01 19 16860225 16860225 C G NWD1 Missense_Mutation p.H258D 0.46 deleterious(0.01) probably_damaging(0.981) TCGA-D8-A1J9-01 19 17330038 17330038 C T USE1 Nonsense_Mutation p.Q147* 0.31 TCGA-D8-A1J9-01 19 17949174 17949174 C G JAK3 Missense_Mutation p.Q489H 0.30 deleterious(0.01) benign(0.069) TCGA-D8-A1J9-01 19 19293325 19293325 G C MEF2BNB Intron 0.34 TCGA-D8-A1J9-01 19 32954383 32954383 G A DPY19L3 Silent p.L478L 0.05 TCGA-D8-A1J9-01 19 41388071 41388071 C T CYP2A7 Silent p.L15L 0.39 TCGA-D8-A1J9-01 19 41595962 41595962 C T CYP2A13 Silent p.F118F 0.43 TCGA-D8-A1J9-01 19 43699148 43699148 G A PSG4 Silent p.L329L 0.44 TCGA-D8-A1J9-01 19 44740143 44740143 C T ZNF227 Silent p.F520F 0.09 TCGA-D8-A1J9-01 19 49796530 49796530 G A SLC6A16 Silent p.V576V 0.11 TCGA-D8-A1J9-01 19 51518205 51518205 C T KLK10 Missense_Mutation p.D228N 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1J9-01 19 52032988 52032988 G T SIGLEC6 Silent p.L334L 0.31 TCGA-D8-A1J9-01 19 54760586 54760586 G A LILRB5 Missense_Mutation p.R41W 0.38 tolerated(1) benign(0.009) TCGA-D8-A1J9-01 19 54822582 54822582 C A LILRA5 Intron 0.47 TCGA-D8-A1J9-01 19 57089241 57089241 G C ZNF470 Missense_Mutation p.E482Q 0.08 deleterious(0.04) possibly_damaging(0.642) TCGA-D8-A1J9-01 19 57802084 57802084 G A ZNF460 Missense_Mutation p.E59K 0.35 tolerated(1) benign(0.002) TCGA-D8-A1J9-01 19 58024450 58024450 G C ZNF773 3'Flank 0.35 TCGA-D8-A1J9-01 19 8976844 8976844 C T MUC16 Silent p.L14074L 0.41 TCGA-D8-A1J9-01 19 9868536 9868536 G A ZNF846 Missense_Mutation p.S406F 0.37 deleterious(0.04) possibly_damaging(0.682) TCGA-D8-A1J9-01 1 10190626 10190626 C G UBE4B Silent p.L588L 0.35 TCGA-D8-A1J9-01 1 115113352 115113352 C G BCAS2 Missense_Mutation p.E147Q 0.40 tolerated(0.35) probably_damaging(0.921) TCGA-D8-A1J9-01 1 145588435 145588435 C T NUDT17 Silent p.E146E 0.33 TCGA-D8-A1J9-01 1 149783819 149783819 C T HIST2H2BF Silent p.T20T 0.07 TCGA-D8-A1J9-01 1 149871844 149871844 G C BOLA1 Missense_Mutation p.E78Q 0.62 deleterious(0.03) possibly_damaging(0.56) TCGA-D8-A1J9-01 1 154241261 154241261 C T UBAP2L Missense_Mutation p.S1000F 0.47 deleterious(0) benign(0.32) TCGA-D8-A1J9-01 1 156902341 156902341 A G LRRC71 Intron 0.09 TCGA-D8-A1J9-01 1 157660235 157660235 C G FCRL3 Silent p.L500L 0.25 TCGA-D8-A1J9-01 1 162729640 162729640 C T DDR2 Silent p.F242F 0.24 TCGA-D8-A1J9-01 1 179310328 179310328 C A SOAT1 Silent p.L221L 0.31 TCGA-D8-A1J9-01 1 183599740 183599740 G A ARPC5 Silent p.L86L 0.23 TCGA-D8-A1J9-01 1 183920242 183920242 G A COLGALT2 Silent p.F345F 0.42 TCGA-D8-A1J9-01 1 197898203 197898203 A G LHX9 Silent p.K336K 0.54 TCGA-D8-A1J9-01 1 198492483 198492483 C G ATP6V1G3 3'UTR 0.50 TCGA-D8-A1J9-01 1 211526585 211526585 G C TRAF5 Missense_Mutation p.A2P 0.53 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-D8-A1J9-01 1 212985578 212985578 C G TATDN3 Missense_Mutation p.L204V 0.26 tolerated_low_confidence(0.38) benign(0.037) TCGA-D8-A1J9-01 1 227149179 227149179 C T ADCK3 Silent p.G31G 0.19 TCGA-D8-A1J9-01 1 227152768 227152768 C G ADCK3 Nonsense_Mutation p.S82* 0.06 TCGA-D8-A1J9-01 1 229770771 229770771 C T URB2 Silent p.V137V 0.56 TCGA-D8-A1J9-01 1 241886720 241886720 C G WDR64 Silent p.V382V 0.42 TCGA-D8-A1J9-01 1 24669202 24669202 C T GRHL3 Missense_Mutation p.R409C 0.33 deleterious(0) probably_damaging(0.998) TCGA-D8-A1J9-01 1 246810526 246810526 G C CNST Missense_Mutation p.Q341H 0.29 tolerated(0.06) benign(0.022) TCGA-D8-A1J9-01 1 36288473 36288473 G C AGO4 Missense_Mutation p.D66H 0.06 deleterious(0.01) benign(0.401) TCGA-D8-A1J9-01 1 39824490 39824490 C G MACF1 Nonsense_Mutation p.S1960* 0.38 TCGA-D8-A1J9-01 1 44820585 44820585 C T ERI3 Silent p.P38P 0.56 TCGA-D8-A1J9-01 1 62916806 62916806 G A USP1 3'UTR 0.50 TCGA-D8-A1J9-01 1 65270770 65270770 C G RAVER2 Missense_Mutation p.H452D 0.09 tolerated(0.64) benign(0.139) TCGA-D8-A1J9-01 1 85506704 85506704 C G MCOLN3 Missense_Mutation p.A129P 0.36 deleterious(0.01) possibly_damaging(0.818) TCGA-D8-A1J9-01 1 89651146 89651146 C T GBP4 Missense_Mutation p.E572K 0.26 tolerated(0.39) benign(0.02) TCGA-D8-A1J9-01 1 934931 934931 C G HES4 Silent p.R115R 0.36 TCGA-D8-A1J9-01 20 10639266 10639266 G A JAG1 Nonsense_Mutation p.Q182* 0.49 TCGA-D8-A1J9-01 20 25436306 25436306 C T NINL Intron 0.50 TCGA-D8-A1J9-01 20 25436389 25436389 C T NINL Missense_Mutation p.E1293K 0.57 deleterious(0.02) benign(0.15) TCGA-D8-A1J9-01 20 25443172 25443172 C T NINL Silent p.Q1143Q 0.57 TCGA-D8-A1J9-01 20 33586315 33586315 G A MYH7B Silent p.G1334G 0.38 TCGA-D8-A1J9-01 20 45131108 45131108 C G ZNF334 Missense_Mutation p.E290D 0.39 tolerated(0.07) benign(0.258) TCGA-D8-A1J9-01 20 45354882 45354882 C T SLC2A10 Missense_Mutation p.R403W 0.47 deleterious(0.01) benign(0.05) TCGA-D8-A1J9-01 20 47768247 47768247 G C STAU1 Missense_Mutation p.Q128E 0.37 tolerated(0.25) possibly_damaging(0.593) TCGA-D8-A1J9-01 20 48491270 48491270 C G SLC9A8 Missense_Mutation p.I345M 0.36 deleterious(0) possibly_damaging(0.595) TCGA-D8-A1J9-01 20 49366546 49366546 G A PARD6B Missense_Mutation p.E214K 0.19 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J9-01 21 22696752 22696752 G A NCAM2 Silent p.E223E 0.06 TCGA-D8-A1J9-01 21 45994492 45994492 C G KRTAP10-4 Missense_Mutation p.S286C 0.31 tolerated(1) unknown(0) TCGA-D8-A1J9-01 21 47404315 47404315 C G COL6A1 Silent p.V120V 0.18 TCGA-D8-A1J9-01 21 48056833 48056833 C T PRMT2 5'UTR 0.19 TCGA-D8-A1J9-01 22 23980988 23980988 G A GUSBP11 RNA 0.27 TCGA-D8-A1J9-01 22 25024259 25024259 C T GGT1 Silent p.L489L 0.05 TCGA-D8-A1J9-01 22 25024265 25024265 C T GGT1 Silent p.F491F 0.05 TCGA-D8-A1J9-01 22 35661391 35661391 A G HMGXB4 Missense_Mutation p.K337R 0.24 tolerated(0.14) benign(0.001) TCGA-D8-A1J9-01 22 45785753 45785753 G T SMC1B Missense_Mutation p.H524N 0.42 deleterious(0.02) probably_damaging(0.933) TCGA-D8-A1J9-01 22 50665188 50665188 C T TUBGCP6 Silent p.L525L 0.27 TCGA-D8-A1J9-01 2 111907684 111907684 G C BCL2L11 Missense_Mutation p.R153P 0.41 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J9-01 2 112702601 112702601 G A MERTK Missense_Mutation p.E183K 0.07 tolerated(0.2) probably_damaging(0.955) TCGA-D8-A1J9-01 2 121106995 121106995 G A INHBB Missense_Mutation p.E257K 0.39 deleterious(0.05) benign(0.049) TCGA-D8-A1J9-01 2 131704316 131704316 G A ARHGEF4 Intron 0.21 TCGA-D8-A1J9-01 2 133402996 133402996 C G GPR39 Silent p.L393L 0.36 TCGA-D8-A1J9-01 2 137852504 137852504 G A THSD7B Missense_Mutation p.E338K 0.38 tolerated(0.23) possibly_damaging(0.844) TCGA-D8-A1J9-01 2 152230093 152230093 C A TNFAIP6 Silent p.I218I 0.39 TCGA-D8-A1J9-01 2 160619400 160619400 G C MARCH7 Missense_Mutation p.E635Q 0.31 deleterious(0) probably_damaging(0.992) TCGA-D8-A1J9-01 2 160667156 160667156 G C LY75-CD302 Nonsense_Mutation p.S1527* 0.28 TCGA-D8-A1J9-01 2 168106216 168106216 C T XIRP2 Nonsense_Mutation p.Q2772* 0.23 TCGA-D8-A1J9-01 2 179469849 179469849 C T TTN Missense_Mutation p.E18019K 0.40 TCGA-D8-A1J9-01 2 179613383 179613383 G C TTN Intron 0.44 TCGA-D8-A1J9-01 2 203079096 203079096 G T SUMO1 Nonsense_Mutation p.S50* 0.27 TCGA-D8-A1J9-01 2 206980879 206980879 C G AC007383.4 RNA 0.32 TCGA-D8-A1J9-01 2 209190674 209190674 C G PIKFYVE Missense_Mutation p.Q1047E 0.30 deleterious(0.01) benign(0.194) TCGA-D8-A1J9-01 2 210782561 210782561 C G UNC80 Nonsense_Mutation p.S1631* 0.41 TCGA-D8-A1J9-01 2 220080803 220080803 G C ABCB6 Nonsense_Mutation p.S357* 0.25 TCGA-D8-A1J9-01 2 220082409 220082409 C A ABCB6 Missense_Mutation p.D224Y 0.37 deleterious(0) possibly_damaging(0.839) TCGA-D8-A1J9-01 2 223917969 223917969 G A KCNE4 Missense_Mutation p.E141K 0.25 deleterious(0) probably_damaging(0.985) TCGA-D8-A1J9-01 2 232653269 232653269 C G COPS7B 5'UTR 0.36 TCGA-D8-A1J9-01 2 29246027 29246027 G A FAM179A Silent p.L529L 0.25 TCGA-D8-A1J9-01 2 37284541 37284541 G A HEATR5B Silent p.L714L 0.30 TCGA-D8-A1J9-01 2 43924315 43924315 C T PLEKHH2 Nonsense_Mutation p.Q170* 0.06 TCGA-D8-A1J9-01 2 47693816 47693816 G C MSH2 Missense_Mutation p.Q510H 0.29 deleterious(0.03) benign(0.014) TCGA-D8-A1J9-01 2 55194311 55194311 C T EML6 Intron 0.64 TCGA-D8-A1J9-01 2 62099221 62099221 C T CCT4 Missense_Mutation p.R496Q 0.29 tolerated(0.09) possibly_damaging(0.886) TCGA-D8-A1J9-01 2 62107467 62107467 G A CCT4 Silent p.I111I 0.39 TCGA-D8-A1J9-01 2 63631703 63631703 G A WDPCP Silent p.S305S 0.27 TCGA-D8-A1J9-01 2 71730341 71730341 C T DYSF Intron 0.56 TCGA-D8-A1J9-01 2 89384739 89384739 G C IGKV3-15 Silent p.L93L 0.29 TCGA-D8-A1J9-01 2 97860646 97860646 C A ANKRD36 Missense_Mutation p.S848Y 0.17 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-D8-A1J9-01 3 100484687 100484687 C T ABI3BP Silent p.T905T 0.04 TCGA-D8-A1J9-01 3 120973887 120973887 C T STXBP5L Silent p.F529F 0.10 TCGA-D8-A1J9-01 3 128998666 128998666 G C HMCES Missense_Mutation p.E31Q 0.29 tolerated(0.17) benign(0.021) TCGA-D8-A1J9-01 3 129007811 129007811 G A HMCES Missense_Mutation p.D100N 0.31 deleterious(0) probably_damaging(0.994) TCGA-D8-A1J9-01 3 154055753 154055753 G C GPR149 Missense_Mutation p.S644C 0.20 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J9-01 3 164908085 164908085 C T SLITRK3 Silent p.L178L 0.30 TCGA-D8-A1J9-01 3 167051719 167051719 C T ZBBX Missense_Mutation p.D195N 0.24 deleterious(0.01) benign(0.117) TCGA-D8-A1J9-01 3 187009524 187009524 C T MASP1 5'UTR 0.43 TCGA-D8-A1J9-01 3 194079987 194079987 C T LRRC15 3'UTR 0.25 TCGA-D8-A1J9-01 3 36484978 36484978 G A STAC Silent p.E78E 0.37 TCGA-D8-A1J9-01 3 36587824 36587824 G A STAC 3'UTR 0.59 TCGA-D8-A1J9-01 3 52584783 52584783 C G PBRM1 Missense_Mutation p.G1447R 0.27 deleterious(0.02) possibly_damaging(0.496) TCGA-D8-A1J9-01 3 56681156 56681156 G A FAM208A Nonsense_Mutation p.Q537* 0.50 TCGA-D8-A1J9-01 3 97868793 97868793 T C OR5H14 Silent p.S188S 0.35 TCGA-D8-A1J9-01 4 3179079 3179079 G A HTT Silent p.L1476L 0.29 TCGA-D8-A1J9-01 4 71469607 71469607 G C AMBN Missense_Mutation p.R256T 0.38 deleterious(0.02) probably_damaging(1) TCGA-D8-A1J9-01 4 80905051 80905051 C A ANTXR2 Missense_Mutation p.G387V 0.05 deleterious(0) probably_damaging(0.991) TCGA-D8-A1J9-01 5 130883813 130883813 C G RAPGEF6 Missense_Mutation p.R141T 0.06 deleterious(0.04) probably_damaging(0.992) TCGA-D8-A1J9-01 5 141363115 141363115 G C RNF14 Missense_Mutation p.E412Q 0.12 tolerated(1) benign(0.122) TCGA-D8-A1J9-01 5 147719289 147719289 G A SPINK9 3'UTR 0.08 TCGA-D8-A1J9-01 5 178392294 178392294 G C ZNF454 Missense_Mutation p.E297Q 0.06 deleterious(0) probably_damaging(0.991) TCGA-D8-A1J9-01 5 178392378 178392378 G A ZNF454 Missense_Mutation p.E325K 0.09 tolerated(0.07) benign(0.077) TCGA-D8-A1J9-01 5 23527762 23527763 - G PRDM9 Frame_Shift_Ins p.E857Gfs*14 0.09 TCGA-D8-A1J9-01 5 50090091 50090091 C G PARP8 Missense_Mutation p.S263C 0.30 tolerated(0.06) possibly_damaging(0.571) TCGA-D8-A1J9-01 5 63256550 63256550 G A HTR1A Missense_Mutation p.R333C 0.31 deleterious(0) probably_damaging(0.992) TCGA-D8-A1J9-01 5 66398395 66398395 G A MAST4 Missense_Mutation p.E368K 0.32 probably_damaging(0.996) TCGA-D8-A1J9-01 5 68728835 68728835 C G MARVELD2 Missense_Mutation p.S473C 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-D8-A1J9-01 5 89981683 89981683 C T GPR98 Nonsense_Mutation p.Q2121* 0.32 TCGA-D8-A1J9-01 6 116757740 116757740 C A DSE Silent p.A703A 0.23 TCGA-D8-A1J9-01 6 139569014 139569014 G C TXLNB Missense_Mutation p.F370L 0.35 deleterious(0.02) probably_damaging(0.951) TCGA-D8-A1J9-01 6 152847287 152847287 G A SYNE1 Silent p.D51D 0.31 TCGA-D8-A1J9-01 6 17773736 17773736 T C KIF13A Missense_Mutation p.R1433G 0.31 tolerated(0.16) benign(0.003) TCGA-D8-A1J9-01 6 26158393 26158393 C G HIST1H2BD 5'UTR 0.34 TCGA-D8-A1J9-01 6 26452288 26452288 G C BTN3A3 Missense_Mutation p.E468D 0.42 tolerated(0.09) probably_damaging(0.951) TCGA-D8-A1J9-01 6 27860646 27860646 G A HIST1H2AM Silent p.L94L 0.33 TCGA-D8-A1J9-01 6 30864588 30864588 C T DDR1 Silent p.F605F 0.32 TCGA-D8-A1J9-01 6 38029440 38029440 G A ZFAND3 Missense_Mutation p.E62K 0.08 tolerated(0.71) benign(0.014) TCGA-D8-A1J9-01 7 121650745 121650745 C G PTPRZ1 Missense_Mutation p.P549A 0.22 tolerated(0.1) benign(0.341) TCGA-D8-A1J9-01 7 134643006 134643006 G C CALD1 Missense_Mutation p.D676H 0.35 deleterious(0) probably_damaging(0.999) TCGA-D8-A1J9-01 7 139720045 139720045 T A TBXAS1 3'UTR 0.12 TCGA-D8-A1J9-01 7 27185451 27185451 G C HOXA6 Missense_Mutation p.F176L 0.58 deleterious(0) probably_damaging(0.95) TCGA-D8-A1J9-01 7 5103430 5103430 G C RBAK Missense_Mutation p.E115Q 0.70 tolerated(0.32) benign(0.005) TCGA-D8-A1J9-01 7 74564242 74564242 G C GTF2IRD2B Missense_Mutation p.Q663H 0.22 tolerated(0.07) probably_damaging(0.986) TCGA-D8-A1J9-01 7 75210550 75210550 C T HIP1 Intron 0.41 TCGA-D8-A1J9-01 7 97946565 97946565 C T BAIAP2L1 Missense_Mutation p.R151Q 0.29 deleterious(0.03) benign(0.382) TCGA-D8-A1J9-01 8 133078182 133078182 C G HHLA1 3'Flank 0.05 TCGA-D8-A1J9-01 8 146107388 146107388 C G ZNF250 Missense_Mutation p.E399Q 0.08 deleterious(0.02) benign(0.354) TCGA-D8-A1J9-01 8 24151642 24151642 G T ADAM28 5'UTR 0.05 TCGA-D8-A1J9-01 8 27987074 27987074 G C ELP3 Missense_Mutation p.D225H 0.07 deleterious(0) probably_damaging(1) TCGA-D8-A1J9-01 8 80956423 80956423 G C TPD52 Intron 0.34 TCGA-D8-A1J9-01 8 91064064 91064064 A T DECR1 Splice_Site p.X317_splice 0.05 TCGA-D8-A1J9-01 9 114371402 114371402 G C LRRC37A5P RNA 0.20 TCGA-D8-A1J9-01 9 128092475 128092475 A G GAPVD1 Silent p.V717V 0.05 TCGA-D8-A1J9-01 9 134736049 134736049 C A MED27 Missense_Mutation p.R271I 0.71 tolerated(0.05) possibly_damaging(0.589) TCGA-D8-A1J9-01 9 14776228 14776228 C T FREM1 Intron 0.25 TCGA-D8-A1J9-01 9 32631492 32631492 G C TAF1L Silent p.L1362L 0.51 TCGA-D8-A1J9-01 9 35660349 35660349 G A ARHGEF39 3'UTR 0.05 TCGA-D8-A1J9-01 9 35660647 35660647 G A CCDC107 Intron 0.05 TCGA-D8-A1J9-01 9 35662256 35662256 G A ARHGEF39 Silent p.F304F 0.08 TCGA-D8-A1J9-01 9 35664056 35664056 C A ARHGEF39 Missense_Mutation p.G141V 0.04 tolerated(0.33) possibly_damaging(0.487) TCGA-D8-A1J9-01 9 36169443 36169443 G C CCIN 5'UTR 0.08 TCGA-D8-A1J9-01 9 36840436 36840436 C T PAX5 3'UTR 0.12 TCGA-D8-A1J9-01 9 77397680 77397680 C A TRPM6 Missense_Mutation p.E1003D 0.18 deleterious(0) possibly_damaging(0.838) TCGA-D8-A1J9-01 9 88916365 88916365 G C ZCCHC6 Missense_Mutation p.Q1416E 0.33 deleterious_low_confidence(0.02) benign(0.045) TCGA-D8-A1J9-01 9 95277329 95277329 G A ECM2 Missense_Mutation p.S213F 0.14 tolerated(0.79) benign(0.003) TCGA-D8-A1J9-01 9 99721158 99721158 G C HIATL2 Missense_Mutation p.Q76E 0.22 tolerated(0.5) benign(0.002) TCGA-D8-A1J9-01 X 108652232 108652232 C G GUCY2F Missense_Mutation p.D653H 0.05 deleterious(0.01) benign(0.376) TCGA-D8-A1J9-01 X 123224764 123224764 G A STAG2 Silent p.E1176E 0.06 TCGA-D8-A1J9-01 X 134483189 134483189 C T ZNF449 Missense_Mutation p.P170L 0.05 tolerated(0.32) benign(0.015) TCGA-D8-A1J9-01 X 150156319 150156319 A T HMGB3 Nonsense_Mutation p.K179* 0.11 TCGA-D8-A1J9-01 X 150867032 150867032 T G PRRG3 5'UTR 0.33 TCGA-D8-A1J9-01 X 151935227 151935227 C T MAGEA3 Missense_Mutation p.E314K 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-D8-A1J9-01 X 152986357 152986357 G A BCAP31 Missense_Mutation p.L122F 0.24 tolerated(0.22) probably_damaging(0.972) TCGA-D8-A1J9-01 X 3227600 3227600 C A MXRA5 3'UTR 0.32 TCGA-D8-A1J9-01 X 32364170 32364170 C A DMD Nonsense_Mutation p.E1826* 0.07 TCGA-D8-A1J9-01 X 32408271 32408271 C G DMD Missense_Mutation p.E1421Q 0.03 possibly_damaging(0.888) TCGA-D8-A1J9-01 X 47976517 47976517 C T SSX6 3'Flank 0.40 TCGA-D8-A1J9-01 X 48385374 48385374 C G EBP Intron 0.53 TCGA-D8-A1J9-01 X 53115366 53115366 G A TSPYL2 Missense_Mutation p.D598N 0.53 deleterious_low_confidence(0) benign(0.021) TCGA-D8-A1J9-01 X 7268108 7268108 G A STS Missense_Mutation p.E520K 0.09 deleterious(0.04) possibly_damaging(0.678) TCGA-D8-A1J9-01 X 8764358 8764358 T C FAM9A Missense_Mutation p.K147E 0.07 tolerated_low_confidence(0.26) benign(0.012) TCGA-D8-A1JB-01 10 15115160 15115160 G T OLAH Missense_Mutation p.A297S 0.13 tolerated(1) benign(0.12) TCGA-D8-A1JB-01 10 46254848 46254848 A T FAM21C Missense_Mutation p.E545V 0.10 deleterious(0) benign(0.426) TCGA-D8-A1JB-01 10 89692924 89692934 TGCATATTTAT - PTEN Frame_Shift_Del p.A137Tfs*39 0.17 TCGA-D8-A1JB-01 11 121178183 121178183 G A SC5D Missense_Mutation p.E288K 0.20 tolerated(0.22) benign(0.002) TCGA-D8-A1JB-01 11 18741438 18741438 G A IGSF22 Missense_Mutation p.A174V 0.11 tolerated(0.24) benign(0.001) TCGA-D8-A1JB-01 11 46920519 46920519 G C LRP4 Missense_Mutation p.I204M 0.15 deleterious(0) probably_damaging(0.934) TCGA-D8-A1JB-01 11 6588853 6588853 C G DNHD1 Silent p.L4038L 0.12 TCGA-D8-A1JB-01 12 62103999 62103999 G T FAM19A2 3'UTR 0.12 TCGA-D8-A1JB-01 12 72008399 72008399 A G ZFC3H1 Silent p.N1814N 0.05 TCGA-D8-A1JB-01 12 72068026 72068026 G T THAP2 Missense_Mutation p.V39F 0.17 tolerated(0.11) possibly_damaging(0.478) TCGA-D8-A1JB-01 12 8759561 8759561 C T AICDA Missense_Mutation p.R19H 0.09 tolerated(0.49) probably_damaging(0.984) TCGA-D8-A1JB-01 14 101518803 101518803 C A MIR487A RNA 0.06 TCGA-D8-A1JB-01 14 106110114 106110114 T C IGHG2 Silent p.T168T 0.14 TCGA-D8-A1JB-01 14 21792893 21792893 C - RPGRIP1 Frame_Shift_Del p.L627Ffs*11 0.14 TCGA-D8-A1JB-01 14 45658275 45658275 A T FANCM Nonsense_Mutation p.R1684* 0.07 TCGA-D8-A1JB-01 15 52605831 52605831 G C MYO5A 3'UTR 0.12 TCGA-D8-A1JB-01 16 30734392 30734392 C T SRCAP Missense_Mutation p.P1334L 0.07 possibly_damaging(0.726) TCGA-D8-A1JB-01 17 20224726 20224726 G A AC004702.2 Intron 0.15 TCGA-D8-A1JB-01 17 27286098 27286098 C A SEZ6 Silent p.S684S 0.13 TCGA-D8-A1JB-01 17 3424315 3424315 G C TRPV3 Missense_Mutation p.L588V 0.09 tolerated(0.08) possibly_damaging(0.527) TCGA-D8-A1JB-01 17 64738845 64738845 C A PRKCA Silent p.T497T 0.09 TCGA-D8-A1JB-01 17 73624831 73624831 G A RECQL5 Missense_Mutation p.P834L 0.12 tolerated(0.35) benign(0) TCGA-D8-A1JB-01 17 79479072 79479072 C G ACTG1 Missense_Mutation p.G74R 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D8-A1JB-01 19 10502337 10502337 C T CDC37 Missense_Mutation p.V343I 0.17 tolerated(0.1) benign(0.03) TCGA-D8-A1JB-01 19 14991697 14991697 C T OR7A17 Silent p.L157L 0.05 TCGA-D8-A1JB-01 19 4028168 4028168 C T PIAS4 Silent p.A188A 0.10 TCGA-D8-A1JB-01 19 41778020 41778020 C A HNRNPUL1 Missense_Mutation p.T151N 0.13 tolerated(0.48) unknown(0) TCGA-D8-A1JB-01 19 45162224 45162224 T C PVR Intron 0.10 TCGA-D8-A1JB-01 19 55330004 55330004 C A KIR3DL1 Missense_Mutation p.S102Y 0.09 tolerated(0.12) benign(0.022) TCGA-D8-A1JB-01 19 57908453 57908453 C T ZNF548 Missense_Mutation p.S30F 0.08 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JB-01 1 14113237 14113237 G C PRDM2 Intron 0.12 TCGA-D8-A1JB-01 1 16902810 16902810 C T NBPF1 Missense_Mutation p.A691T 0.02 tolerated(0.19) probably_damaging(0.995) TCGA-D8-A1JB-01 1 200959275 200959275 C T KIF21B Silent p.E1007E 0.26 TCGA-D8-A1JB-01 1 212798867 212798867 G A FAM71A Silent p.Q216Q 0.12 TCGA-D8-A1JB-01 1 22202527 22202527 G A HSPG2 Silent p.S1004S 0.14 TCGA-D8-A1JB-01 1 224345435 224345435 G A FBXO28 Missense_Mutation p.R365Q 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-D8-A1JB-01 1 241729895 241729895 C A KMO Silent p.A264A 0.09 TCGA-D8-A1JB-01 1 54375693 54375693 C A DIO1 3'UTR 0.12 TCGA-D8-A1JB-01 20 23584193 23584193 C T CST9 Missense_Mutation p.G145D 0.14 tolerated_low_confidence(0.38) possibly_damaging(0.508) TCGA-D8-A1JB-01 20 33764562 33764562 C T PROCR Silent p.I221I 0.09 TCGA-D8-A1JB-01 20 34293174 34293174 A T RBM39 Missense_Mutation p.H462Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JB-01 20 54824569 54824569 C G MC3R Missense_Mutation p.L224V 0.05 deleterious(0.01) probably_damaging(0.957) TCGA-D8-A1JB-01 22 21088742 21088742 C T PI4KA Missense_Mutation p.E1281K 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-D8-A1JB-01 2 113820261 113820261 G A IL36RN 3'UTR 0.17 TCGA-D8-A1JB-01 2 179648492 179648492 T G TTN Silent p.V932V 0.14 TCGA-D8-A1JB-01 2 198571277 198571277 A G MARS2 Missense_Mutation p.D383G 0.09 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JB-01 2 211447381 211447381 T C CPS1 Missense_Mutation p.V196A 0.09 tolerated(0.12) benign(0.234) TCGA-D8-A1JB-01 2 27666120 27666120 C G KRTCAP3 Missense_Mutation p.D151E 0.08 tolerated(0.35) probably_damaging(0.999) TCGA-D8-A1JB-01 2 27876556 27876556 T G SUPT7L Missense_Mutation p.Q347H 0.18 deleterious(0.01) possibly_damaging(0.751) TCGA-D8-A1JB-01 2 90121923 90121923 G A IGKV1D-17 Silent p.A47A 0.09 TCGA-D8-A1JB-01 3 148877913 148877913 G A HPS3 Missense_Mutation p.M651I 0.14 deleterious(0.01) benign(0.004) TCGA-D8-A1JB-01 3 164710170 164710170 T A SI Missense_Mutation p.K1619N 0.10 tolerated(0.18) possibly_damaging(0.827) TCGA-D8-A1JB-01 3 195295713 195295713 T G APOD 3'UTR 0.50 TCGA-D8-A1JB-01 3 25668734 25668734 T G TOP2B Silent p.R649R 0.15 TCGA-D8-A1JB-01 3 37114294 37114294 T C LRRFIP2 Missense_Mutation p.D484G 0.12 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JB-01 3 98240072 98240072 T C CLDND1 Missense_Mutation p.D89G 0.16 deleterious(0.04) probably_damaging(0.986) TCGA-D8-A1JB-01 4 160279312 160279312 C A RAPGEF2 3'UTR 0.24 TCGA-D8-A1JB-01 5 156184773 156184773 C A SGCD Intron 0.08 TCGA-D8-A1JB-01 5 169138958 169138958 A T DOCK2 Missense_Mutation p.D501V 0.26 deleterious(0) possibly_damaging(0.805) TCGA-D8-A1JB-01 6 10556843 10556843 A T GCNT2 Intron 0.36 TCGA-D8-A1JB-01 6 135751072 135751072 G A AHI1 Missense_Mutation p.R814C 0.19 tolerated(0.1) benign(0.085) TCGA-D8-A1JB-01 7 33028234 33028238 CCTCA - FKBP9 Frame_Shift_Del p.H338Gfs*19 0.19 TCGA-D8-A1JB-01 7 36466568 36466568 C T ANLN Silent p.N938N 0.07 TCGA-D8-A1JB-01 8 103359305 103359305 A G UBR5 Silent p.S134S 0.09 TCGA-D8-A1JB-01 8 56436255 56436255 C G XKR4 Silent p.L474L 0.09 TCGA-D8-A1JB-01 X 49113304 49113304 G A FOXP3 Missense_Mutation p.S184L 0.10 tolerated(0.39) benign(0.003) TCGA-D8-A1JC-01 10 70333071 70333071 G A TET1 Missense_Mutation p.V326I 0.38 deleterious(0.01) benign(0.02) TCGA-D8-A1JC-01 10 73510938 73510938 C G C10orf54 3'UTR 0.33 TCGA-D8-A1JC-01 10 75481226 75481226 C T RP11-574K11.28 RNA 0.17 TCGA-D8-A1JC-01 11 30900183 30900193 ATGTCTGTGGC - DCDC1 Frame_Shift_Del p.A1764Cfs*? 0.39 TCGA-D8-A1JC-01 11 34192619 34192619 C T ABTB2 Splice_Site p.X466_splice 0.71 TCGA-D8-A1JC-01 11 46920500 46920500 C G LRP4 Missense_Mutation p.D211H 0.45 deleterious(0) probably_damaging(0.993) TCGA-D8-A1JC-01 11 70178134 70178134 G A PPFIA1 Silent p.L382L 0.10 TCGA-D8-A1JC-01 11 73978162 73978162 C T P4HA3 3'UTR 0.55 TCGA-D8-A1JC-01 11 76888681 76888681 C T MYO7A Silent p.F758F 0.09 TCGA-D8-A1JC-01 11 76928355 76928355 A G GDPD4 Silent p.T510T 0.19 TCGA-D8-A1JC-01 11 94758700 94758700 C T KDM4E 5'UTR 0.49 TCGA-D8-A1JC-01 12 43823449 43823449 C T ADAMTS20 Missense_Mutation p.A1154T 0.26 tolerated(1) benign(0.02) TCGA-D8-A1JC-01 12 52159886 52159886 C G SCN8A Intron 0.52 TCGA-D8-A1JC-01 12 85438525 85438525 C T LRRIQ1 Missense_Mutation p.H92Y 0.25 tolerated(0.43) benign(0.013) TCGA-D8-A1JC-01 13 23898778 23898778 G A SGCG 3'UTR 0.73 TCGA-D8-A1JC-01 13 23915127 23915127 G C SACS Missense_Mutation p.S963C 0.66 probably_damaging(0.995) TCGA-D8-A1JC-01 14 23311622 23311622 C G MMP14 Missense_Mutation p.I128M 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A1JC-01 14 24729190 24729190 C T TGM1 Missense_Mutation p.G278R 0.35 deleterious(0) probably_damaging(1) TCGA-D8-A1JC-01 14 36192403 36192403 A T RALGAPA1 Nonsense_Mutation p.L645* 0.35 TCGA-D8-A1JC-01 14 92268677 92268677 G C TC2N Missense_Mutation p.F130L 0.24 tolerated(0.66) benign(0.017) TCGA-D8-A1JC-01 15 43940189 43940189 T A CATSPER2 Missense_Mutation p.D24V 0.40 deleterious(0.01) benign(0.214) TCGA-D8-A1JC-01 15 49659665 49659665 G A FAM227B Silent p.L417L 0.26 TCGA-D8-A1JC-01 15 69733225 69733225 G C KIF23 Missense_Mutation p.W729S 0.26 deleterious(0.02) benign(0.021) TCGA-D8-A1JC-01 15 75188521 75188521 C T MPI Silent p.I233I 0.32 TCGA-D8-A1JC-01 16 14024573 14024573 C T ERCC4 Missense_Mutation p.R267C 0.28 deleterious(0.01) benign(0.032) TCGA-D8-A1JC-01 16 20976523 20976523 C T DNAH3 Missense_Mutation p.D2895N 0.62 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JC-01 16 2134403 2134403 C T TSC2 Silent p.L1394L 0.30 TCGA-D8-A1JC-01 16 28948602 28948605 AGAG - CD19 Frame_Shift_Del p.E404Kfs*64 0.50 TCGA-D8-A1JC-01 16 29853120 29853120 C T MVP Silent p.N465N 0.37 TCGA-D8-A1JC-01 16 3074044 3074044 G C THOC6 5'UTR 0.37 TCGA-D8-A1JC-01 16 67662443 67662443 A T CTCF Silent p.T563T 0.48 TCGA-D8-A1JC-01 16 9857878 9857878 C T GRIN2A Missense_Mutation p.E1175K 0.24 tolerated(0.52) benign(0.282) TCGA-D8-A1JC-01 17 10265677 10265677 G A MYH13 Silent p.Y116Y 0.55 TCGA-D8-A1JC-01 17 10312639 10312639 C A MYH8 Missense_Mutation p.K618N 0.18 deleterious(0.01) possibly_damaging(0.751) TCGA-D8-A1JC-01 17 41939193 41939193 C T CD300LG Nonsense_Mutation p.Q305* 0.33 TCGA-D8-A1JC-01 17 63554225 63554225 C G AXIN2 Missense_Mutation p.D172H 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A1JC-01 17 65888148 65888148 G C BPTF Missense_Mutation p.E685Q 0.10 benign(0.049) TCGA-D8-A1JC-01 18 72238475 72238475 G A CNDP1 Missense_Mutation p.E271K 0.59 deleterious(0) probably_damaging(0.991) TCGA-D8-A1JC-01 19 11489402 11489402 C G EPOR Missense_Mutation p.E294Q 0.16 tolerated(0.17) benign(0.111) TCGA-D8-A1JC-01 19 12384086 12384097 CATGTGTCTTTG TA ZNF44 Frame_Shift_Del p.Q373* 0.41 TCGA-D8-A1JC-01 19 12384097 12384097 G A ZNF44 Nonsense_Mutation p.Q373* 0.41 TCGA-D8-A1JC-01 19 14627556 14627556 G T DNAJB1 Missense_Mutation p.L172I 0.48 deleterious(0.01) possibly_damaging(0.875) TCGA-D8-A1JC-01 19 22574315 22574315 C G ZNF98 3'UTR 0.46 TCGA-D8-A1JC-01 19 33406413 33406413 C T CEP89 Silent p.L465L 0.42 TCGA-D8-A1JC-01 19 55420647 55420647 A G NCR1 Silent p.E133E 0.33 TCGA-D8-A1JC-01 19 7676908 7676908 C T CAMSAP3 Missense_Mutation p.S537F 0.52 tolerated(0.06) possibly_damaging(0.718) TCGA-D8-A1JC-01 1 116670894 116670894 G C MAB21L3 Missense_Mutation p.M263I 0.56 tolerated(0.1) benign(0.014) TCGA-D8-A1JC-01 1 150255816 150255816 G C C1orf51 Missense_Mutation p.D47H 0.05 deleterious(0) possibly_damaging(0.833) TCGA-D8-A1JC-01 1 150620761 150620761 G A GOLPH3L 3'UTR 0.76 TCGA-D8-A1JC-01 1 152283008 152283008 C G FLG Missense_Mutation p.E1452Q 0.06 benign(0.403) TCGA-D8-A1JC-01 1 155100432 155100432 C G EFNA1 5'UTR 0.33 TCGA-D8-A1JC-01 1 161043062 161043062 C G PVRL4 Missense_Mutation p.E421Q 0.25 deleterious(0.04) possibly_damaging(0.872) TCGA-D8-A1JC-01 1 161047354 161047354 C G PVRL4 Missense_Mutation p.E207Q 0.24 tolerated(0.08) possibly_damaging(0.573) TCGA-D8-A1JC-01 1 162351892 162351892 G A RP11-565P22.6 Silent p.R176R 0.53 TCGA-D8-A1JC-01 1 176863701 176863701 C T ASTN1 Silent p.Q979Q 0.21 TCGA-D8-A1JC-01 1 178408562 178408562 G A RASAL2 Missense_Mutation p.R227H 0.46 tolerated(0.27) probably_damaging(0.998) TCGA-D8-A1JC-01 1 186280194 186280194 C T PRG4 Silent p.F1176F 0.29 TCGA-D8-A1JC-01 1 202317977 202317977 G C PPP1R12B 5'UTR 0.41 TCGA-D8-A1JC-01 1 206619542 206619542 G C SRGAP2 Missense_Mutation p.E580Q 0.19 tolerated(0.27) possibly_damaging(0.503) TCGA-D8-A1JC-01 1 207039354 207039354 G A IL20 Missense_Mutation p.V53M 0.23 tolerated(0.07) benign(0.281) TCGA-D8-A1JC-01 1 230979431 230979431 C T C1orf198 Missense_Mutation p.R199Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-D8-A1JC-01 1 41300696 41300696 C T KCNQ4 Silent p.D557D 0.28 TCGA-D8-A1JC-01 20 32265062 32265062 C T E2F1 Silent p.G305G 0.09 TCGA-D8-A1JC-01 20 58644968 58644968 C T C20orf197 5'UTR 0.18 TCGA-D8-A1JC-01 20 60869105 60869105 G A OSBPL2 3'UTR 0.14 TCGA-D8-A1JC-01 2 102998106 102998106 C G IL18R1 Missense_Mutation p.L218V 0.30 tolerated(0.08) benign(0.315) TCGA-D8-A1JC-01 2 149864531 149864531 A G KIF5C Missense_Mutation p.I834V 0.07 deleterious(0.02) possibly_damaging(0.694) TCGA-D8-A1JC-01 2 219887050 219887050 G A CCDC108 Missense_Mutation p.T941M 0.33 tolerated(0.07) benign(0.038) TCGA-D8-A1JC-01 2 220192138 220192138 G A RESP18 3'UTR 0.30 TCGA-D8-A1JC-01 2 220501075 220501075 C A SLC4A3 Missense_Mutation p.A775D 0.31 deleterious(0) benign(0.29) TCGA-D8-A1JC-01 2 37304075 37304075 C G HEATR5B Missense_Mutation p.L142F 0.08 deleterious(0) probably_damaging(0.972) TCGA-D8-A1JC-01 2 74699368 74699368 G A MRPL53 Missense_Mutation p.R73C 0.30 deleterious(0) probably_damaging(0.939) TCGA-D8-A1JC-01 2 86993049 86993049 C A RMND5A Missense_Mutation p.H252Q 0.35 tolerated(0.05) benign(0.215) TCGA-D8-A1JC-01 3 101284455 101284455 C T TRMT10C Missense_Mutation p.S277F 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-D8-A1JC-01 3 113375166 113375166 C T KIAA2018 Missense_Mutation p.R1788H 0.36 probably_damaging(0.999) TCGA-D8-A1JC-01 3 131188558 131188558 C T MRPL3 Silent p.R266R 0.24 TCGA-D8-A1JC-01 3 138374293 138374293 C T PIK3CB Missense_Mutation p.E1051K 0.30 deleterious(0.03) possibly_damaging(0.883) TCGA-D8-A1JC-01 3 1414111 1414111 G A CNTN6 Missense_Mutation p.V541I 0.35 tolerated(0.25) benign(0.008) TCGA-D8-A1JC-01 3 15094076 15094076 G A MRPS25 Nonsense_Mutation p.R132* 0.48 TCGA-D8-A1JC-01 3 160141276 160141276 G C SMC4 Missense_Mutation p.D695H 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A1JC-01 3 160155725 160155725 G T TRIM59 3'UTR 0.32 TCGA-D8-A1JC-01 3 49785347 49785347 C T IP6K1 Missense_Mutation p.D43N 0.07 tolerated(0.14) possibly_damaging(0.87) TCGA-D8-A1JC-01 3 50091779 50091779 C G RBM6 Missense_Mutation p.N548K 0.60 tolerated(0.91) benign(0.01) TCGA-D8-A1JC-01 4 108954346 108954346 G A HADH Missense_Mutation p.E259K 0.34 tolerated(0.22) benign(0.13) TCGA-D8-A1JC-01 4 189061035 189061035 A T TRIML1 Missense_Mutation p.D108V 0.24 deleterious(0) possibly_damaging(0.475) TCGA-D8-A1JC-01 4 47405684 47405684 C T GABRB1 Missense_Mutation p.S264F 0.38 deleterious(0) probably_damaging(1) TCGA-D8-A1JC-01 4 56291743 56291743 G C TMEM165 3'UTR 0.36 TCGA-D8-A1JC-01 4 83839429 83839429 C T THAP9 Silent p.H688H 0.35 TCGA-D8-A1JC-01 5 140482555 140482555 C A PCDHB3 Missense_Mutation p.F774L 0.32 tolerated_low_confidence(1) benign(0.003) TCGA-D8-A1JC-01 5 149637130 149637130 C T CAMK2A Missense_Mutation p.D90N 0.35 deleterious_low_confidence(0) benign(0.275) TCGA-D8-A1JC-01 5 158126106 158126106 C T EBF1 3'UTR 0.31 TCGA-D8-A1JC-01 5 179707592 179707592 G C MAPK9 5'UTR 0.30 TCGA-D8-A1JC-01 5 31799670 31799670 G C PDZD2 Missense_Mutation p.K105N 0.29 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JC-01 5 37020923 37020923 C T NIPBL Nonsense_Mutation p.R1758* 0.28 TCGA-D8-A1JC-01 5 39383284 39383284 G A DAB2 Silent p.G259G 0.34 TCGA-D8-A1JC-01 5 60050275 60050275 C G ELOVL7 3'UTR 0.29 TCGA-D8-A1JC-01 5 94749730 94749730 A G FAM81B Missense_Mutation p.I125V 0.35 tolerated(0.16) benign(0.034) TCGA-D8-A1JC-01 6 117894762 117894762 C T GOPC Missense_Mutation p.M228I 0.36 tolerated(0.08) benign(0.222) TCGA-D8-A1JC-01 6 124604227 124604227 T A NKAIN2 Missense_Mutation p.I44N 0.34 deleterious(0) probably_damaging(0.972) TCGA-D8-A1JC-01 6 151907171 151907171 G C CCDC170 Missense_Mutation p.E414Q 0.09 deleterious(0.04) probably_damaging(0.97) TCGA-D8-A1JC-01 6 85466511 85466511 G A TBX18 Missense_Mutation p.P226S 0.48 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JC-01 7 105893591 105893591 C G NAMPT Missense_Mutation p.V413L 0.30 deleterious(0.01) probably_damaging(0.949) TCGA-D8-A1JC-01 7 112407217 112407217 T A TMEM168 3'UTR 0.35 TCGA-D8-A1JC-01 7 155567271 155567271 C G RBM33 Missense_Mutation p.Q1132E 0.06 tolerated(0.15) unknown(0) TCGA-D8-A1JC-01 7 1937992 1937992 C G MAD1L1 Missense_Mutation p.K614N 0.06 deleterious(0) probably_damaging(0.931) TCGA-D8-A1JC-01 7 64838793 64838793 C T ZNF92 5'UTR 0.22 TCGA-D8-A1JC-01 7 82544011 82544011 C G PCLO Missense_Mutation p.D4431H 0.33 unknown(0) TCGA-D8-A1JC-01 8 124526556 124526556 T C FBXO32 Silent p.A130A 0.64 TCGA-D8-A1JC-01 8 133192479 133192479 G A KCNQ3 Silent p.I234I 0.26 TCGA-D8-A1JC-01 8 143957771 143957771 G A CYP11B1 Silent p.F280F 0.19 TCGA-D8-A1JC-01 8 38124737 38124737 C G PPAPDC1B Intron 0.36 TCGA-D8-A1JC-01 8 94747082 94747082 G A RBM12B Silent p.Y519Y 0.48 TCGA-D8-A1JC-01 9 35076497 35076497 T C FANCG Silent p.S336S 0.53 TCGA-D8-A1JC-01 X 118215410 118215410 C T KIAA1210 Missense_Mutation p.R1671Q 0.49 tolerated(0.08) benign(0.005) TCGA-D8-A1JC-01 X 119565099 119565099 C G LAMP2 Intron 0.19 TCGA-D8-A1JC-01 X 142716306 142716306 C G SLITRK4 3'UTR 0.29 TCGA-D8-A1JC-01 X 153219201 153219201 C T HCFC1 Missense_Mutation p.D1452N 0.38 tolerated_low_confidence(0.27) probably_damaging(0.986) TCGA-D8-A1JC-01 X 154124399 154124399 C A F8 Missense_Mutation p.G2128W 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-D8-A1JC-01 X 38156545 38156545 T A RPGR Missense_Mutation p.E469V 0.11 benign(0.014) TCGA-D8-A1JC-01 X 41587090 41587091 - T GPR82 Frame_Shift_Ins p.Y273Lfs*8 0.23 TCGA-D8-A1JC-01 X 47435604 47435604 C T SYN1 Missense_Mutation p.E362K 0.06 deleterious(0.01) benign(0.204) TCGA-D8-A1JC-01 X 5811360 5811360 G A NLGN4X Missense_Mutation p.S650F 0.29 deleterious(0.04) benign(0.018) TCGA-D8-A1JC-01 X 65247938 65247938 G A VSIG4 Silent p.L237L 0.43 TCGA-D8-A1JC-01 X 69454541 69454541 G A AWAT1 5'UTR 0.27 TCGA-D8-A1JC-01 X 99941449 99941449 G T SYTL4 Intron 0.40 TCGA-D8-A1JC-01 Y 16952640 16952640 C T NLGN4Y Missense_Mutation p.S650F 0.21 deleterious(0.03) benign(0.03) TCGA-D8-A1JD-01 10 14862106 14862106 T G CDNF Missense_Mutation p.E146A 0.10 deleterious(0) possibly_damaging(0.796) TCGA-D8-A1JD-01 10 14862115 14862115 C G CDNF Missense_Mutation p.R143T 0.11 deleterious(0) probably_damaging(0.988) TCGA-D8-A1JD-01 10 17686365 17686365 C T STAM Silent p.F9F 0.40 TCGA-D8-A1JD-01 10 21177025 21177025 C A NEBL Splice_Site p.X123_splice 0.12 TCGA-D8-A1JD-01 10 50036827 50036827 C G WDFY4 Missense_Mutation p.P2076A 0.11 tolerated(0.11) benign(0.272) TCGA-D8-A1JD-01 11 119029289 119029289 T G ABCG4 Missense_Mutation p.M397R 0.14 tolerated(0.2) benign(0.045) TCGA-D8-A1JD-01 11 14854289 14854289 G C PDE3B Missense_Mutation p.D706H 0.18 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JD-01 11 18503243 18503243 T C TSG101 Silent p.E339E 0.12 TCGA-D8-A1JD-01 11 33049260 33049260 G A DEPDC7 Missense_Mutation p.D165N 0.09 tolerated(0.42) benign(0.018) TCGA-D8-A1JD-01 11 58384907 58384907 G A ZFP91 Missense_Mutation p.E481K 0.09 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-D8-A1JD-01 12 106729504 106729504 C A TCP11L2 Missense_Mutation p.A287D 0.08 tolerated(0.1) possibly_damaging(0.673) TCGA-D8-A1JD-01 12 113633598 113633598 G A IQCD Nonsense_Mutation p.Q276* 0.19 TCGA-D8-A1JD-01 12 113875830 113875830 C A SDSL Missense_Mutation p.N312K 0.28 tolerated(0.05) possibly_damaging(0.655) TCGA-D8-A1JD-01 12 120884189 120884189 G C TRIAP1 5'UTR 0.12 TCGA-D8-A1JD-01 12 16704056 16704056 G T LMO3 3'UTR 0.27 TCGA-D8-A1JD-01 12 21207557 21207557 G A SLCO1B7 Missense_Mutation p.V510M 0.23 tolerated(1) benign(0.003) TCGA-D8-A1JD-01 12 50453668 50453668 C T ASIC1 Silent p.H163H 0.11 TCGA-D8-A1JD-01 12 54677623 54677666 ACAATGATTTTGGGAATTACAACAATCAGTCTTCAAATTTTGGA - HNRNPA1 Frame_Shift_Del p.Y312Sfs*39 0.17 TCGA-D8-A1JD-01 12 7480932 7480932 G A ACSM4 Missense_Mutation p.R569H 0.23 deleterious(0.01) possibly_damaging(0.617) TCGA-D8-A1JD-01 12 88496844 88496844 C T CEP290 Intron 0.63 TCGA-D8-A1JD-01 13 31891805 31891805 C T B3GALTL Silent p.Y389Y 0.17 TCGA-D8-A1JD-01 14 103802424 103802424 G A EIF5 Missense_Mutation p.V42I 0.18 tolerated(0.55) benign(0.056) TCGA-D8-A1JD-01 14 23828087 23828087 G A EFS Nonsense_Mutation p.Q417* 0.10 TCGA-D8-A1JD-01 14 61447964 61447964 T A SLC38A6 5'UTR 0.38 TCGA-D8-A1JD-01 14 67864511 67864511 C A PLEK2 Missense_Mutation p.W25C 0.33 deleterious(0) probably_damaging(1) TCGA-D8-A1JD-01 15 63097800 63097800 T G TLN2 Missense_Mutation p.V2160G 0.12 deleterious(0.03) benign(0.033) TCGA-D8-A1JD-01 15 65494258 65494258 T C CILP Missense_Mutation p.S380G 0.15 tolerated(0.16) benign(0.27) TCGA-D8-A1JD-01 15 75499758 75499758 C G C15orf39 Missense_Mutation p.H457D 0.25 deleterious(0.01) benign(0.402) TCGA-D8-A1JD-01 15 75977998 75977998 C A CSPG4 Silent p.V1278V 0.35 TCGA-D8-A1JD-01 15 81212548 81212548 C A KIAA1199 Silent p.T637T 0.22 TCGA-D8-A1JD-01 15 90270408 90270408 C A WDR93 Missense_Mutation p.L301M 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-D8-A1JD-01 16 11362858 11362872 AGTTCATAGTCTTTT - TNP2 In_Frame_Del p.K83_S88delinsT 0.08 TCGA-D8-A1JD-01 16 29815348 29815348 G A KIF22 Missense_Mutation p.E547K 0.20 tolerated(0.51) benign(0.001) TCGA-D8-A1JD-01 16 62055142 62055142 A G CDH8 Silent p.L56L 0.08 TCGA-D8-A1JD-01 16 72157496 72157496 C T PMFBP1 Missense_Mutation p.R881Q 0.20 tolerated(0.12) benign(0.056) TCGA-D8-A1JD-01 16 74729581 74729581 C T MLKL Silent p.K25K 0.14 TCGA-D8-A1JD-01 16 75267803 75267803 C A BCAR1 Nonsense_Mutation p.E727* 0.28 TCGA-D8-A1JD-01 16 75485730 75485730 C T TMEM170A Nonsense_Mutation p.W47* 0.54 TCGA-D8-A1JD-01 16 775500 775500 C G CCDC78 Missense_Mutation p.E116D 0.08 deleterious(0.03) benign(0.21) TCGA-D8-A1JD-01 16 80667011 80667011 A C CDYL2 Missense_Mutation p.C247G 0.59 tolerated(0.24) probably_damaging(0.996) TCGA-D8-A1JD-01 17 15961915 15961915 T - NCOR1 Splice_Site p.X1961_splice 0.23 TCGA-D8-A1JD-01 17 16526967 16526967 A T ZNF624 Missense_Mutation p.N411K 0.14 deleterious(0) benign(0.239) TCGA-D8-A1JD-01 17 1707930 1707930 C T SMYD4 Missense_Mutation p.G120D 0.13 tolerated(0.07) benign(0.33) TCGA-D8-A1JD-01 17 17721600 17721600 C G SREBF1 Missense_Mutation p.S416T 0.33 tolerated(0.35) benign(0.013) TCGA-D8-A1JD-01 17 30658783 30658783 C G C17orf75 Nonstop_Mutation p.*397Sext*6 0.07 TCGA-D8-A1JD-01 17 33768644 33768644 A C SLFN13 Missense_Mutation p.F620L 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-D8-A1JD-01 17 42744064 42744064 A C C17orf104 Missense_Mutation p.E262A 0.18 tolerated(0.05) benign(0.068) TCGA-D8-A1JD-01 17 43516865 43516865 A C PLEKHM1 Missense_Mutation p.F1013V 0.17 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JD-01 17 47044526 47044526 C G GIP Missense_Mutation p.K23N 0.15 deleterious(0.01) probably_damaging(0.946) TCGA-D8-A1JD-01 17 56770065 56770065 C G RAD51C Missense_Mutation p.P21A 0.10 tolerated(0.32) benign(0.056) TCGA-D8-A1JD-01 18 29426707 29426707 T A TRAPPC8 Missense_Mutation p.K1270I 0.22 deleterious(0.03) benign(0.189) TCGA-D8-A1JD-01 19 16060202 16060202 C A OR10H4 Missense_Mutation p.H129N 0.14 tolerated(1) possibly_damaging(0.557) TCGA-D8-A1JD-01 19 37309630 37309630 C A ZNF790 Missense_Mutation p.C539F 0.13 deleterious(0) probably_damaging(0.915) TCGA-D8-A1JD-01 19 37309690 37309690 G A ZNF790 Missense_Mutation p.S519L 0.10 tolerated(0.14) benign(0.292) TCGA-D8-A1JD-01 19 39219642 39219642 G A ACTN4 Missense_Mutation p.A809T 0.32 tolerated(0.15) benign(0.049) TCGA-D8-A1JD-01 19 43757651 43757651 C T PSG9 3'UTR 0.21 TCGA-D8-A1JD-01 19 46733414 46733414 C G IGFL1 Silent p.A25A 0.06 TCGA-D8-A1JD-01 19 7550870 7550870 G T PEX11G Missense_Mutation p.L35M 0.11 deleterious(0.05) probably_damaging(0.93) TCGA-D8-A1JD-01 1 158532878 158532878 T A OR6P1 Missense_Mutation p.I173F 0.25 deleterious(0.02) benign(0.006) TCGA-D8-A1JD-01 1 16907408 16907408 G A NBPF1 Silent p.L475L 0.04 TCGA-D8-A1JD-01 1 173916523 173916523 T - RC3H1 Frame_Shift_Del p.K907Nfs*62 0.14 TCGA-D8-A1JD-01 1 179090960 179090960 G A ABL2 Missense_Mutation p.L244F 0.20 deleterious(0.03) probably_damaging(1) TCGA-D8-A1JD-01 1 206658614 206658614 G T IKBKE Missense_Mutation p.K529N 0.13 tolerated(0.06) possibly_damaging(0.616) TCGA-D8-A1JD-01 1 207653332 207653342 CAGGTTTGATA - CR2 Frame_Shift_Del p.G1042Sfs*41 0.37 TCGA-D8-A1JD-01 1 220170677 220170677 G A EPRS Missense_Mutation p.A730V 0.28 tolerated(0.24) benign(0.004) TCGA-D8-A1JD-01 1 223408311 223408311 T A SUSD4 Intron 0.04 TCGA-D8-A1JD-01 1 229434758 229434758 G A RAB4A Silent p.G160G 0.28 TCGA-D8-A1JD-01 1 24768672 24768672 C T NIPAL3 Missense_Mutation p.A97V 0.25 deleterious(0.01) probably_damaging(1) TCGA-D8-A1JD-01 1 248366369 248366369 C T OR2M3 5'UTR 0.11 TCGA-D8-A1JD-01 1 27106230 27106230 G T ARID1A Missense_Mutation p.Q1947H 0.21 benign(0.426) TCGA-D8-A1JD-01 1 41236337 41236337 C T NFYC Intron 0.26 TCGA-D8-A1JD-01 1 5940238 5940238 G A NPHP4 Silent p.V849V 0.32 TCGA-D8-A1JD-01 1 70895480 70895480 C A CTH Missense_Mutation p.P198T 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JD-01 1 89294223 89294223 G C PKN2 Missense_Mutation p.E827Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JD-01 1 94643037 94643037 G A ARHGAP29 Intron 0.55 TCGA-D8-A1JD-01 2 100199290 100199290 G T AFF3 Missense_Mutation p.S946R 0.14 tolerated(0.23) benign(0.016) TCGA-D8-A1JD-01 2 169791842 169791842 G A ABCB11 Missense_Mutation p.P970S 0.16 tolerated(0.07) benign(0.323) TCGA-D8-A1JD-01 2 202149749 202149749 C T CASP8 Missense_Mutation p.S397F 0.10 deleterious(0) probably_damaging(0.995) TCGA-D8-A1JD-01 2 238283417 238283417 G A COL6A3 Missense_Mutation p.P1106L 0.15 benign(0.173) TCGA-D8-A1JD-01 2 241710387 241710387 C A KIF1A Splice_Site p.X447_splice 0.10 TCGA-D8-A1JD-01 2 55825928 55825928 C G SMEK2 Missense_Mutation p.C182S 0.16 deleterious(0.02) possibly_damaging(0.775) TCGA-D8-A1JD-01 2 85048963 85048963 T A TRABD2A 3'UTR 0.12 TCGA-D8-A1JD-01 2 85628923 85628923 G C CAPG Missense_Mutation p.L61V 0.26 tolerated(0.11) benign(0.322) TCGA-D8-A1JD-01 3 112666767 112666767 C T CD200R1 Silent p.A24A 0.17 TCGA-D8-A1JD-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1JD-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.28 tolerated(0.36) benign(0.4) TCGA-D8-A1JD-01 3 178951957 178951957 G A PIK3CA Missense_Mutation p.M1004I 0.26 deleterious(0.01) benign(0.331) TCGA-D8-A1JD-01 3 3144387 3144387 A T IL5RA Missense_Mutation p.V67E 0.17 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JD-01 3 38938451 38938451 C T SCN11A Missense_Mutation p.R763H 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A1JD-01 3 42244004 42244004 C T TRAK1 Silent p.L502L 0.36 TCGA-D8-A1JD-01 3 46063167 46063167 G A XCR1 Silent p.Y91Y 0.35 TCGA-D8-A1JD-01 3 57651920 57651920 G C DENND6A Missense_Mutation p.S121C 0.14 tolerated(0.49) possibly_damaging(0.873) TCGA-D8-A1JD-01 3 68055689 68055689 C A FAM19A1 Intron 0.25 TCGA-D8-A1JD-01 4 155191053 155191057 TGACT - DCHS2 Frame_Shift_Del p.K1736Rfs*12 0.18 TCGA-D8-A1JD-01 4 169108589 169108589 G C ANXA10 3'UTR 0.09 TCGA-D8-A1JD-01 4 174169552 174169552 T A GALNT7 Missense_Mutation p.I183N 0.15 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JD-01 4 174298512 174298512 T C SAP30 3'UTR 0.11 TCGA-D8-A1JD-01 4 47453642 47453642 C T COMMD8 3'UTR 0.15 TCGA-D8-A1JD-01 4 48139295 48139295 T G TEC 3'UTR 0.64 TCGA-D8-A1JD-01 4 70160694 70160694 C G UGT2B28 3'UTR 0.12 TCGA-D8-A1JD-01 4 73013422 73013422 C G NPFFR2 Missense_Mutation p.Q488E 0.14 tolerated(0.14) benign(0.101) TCGA-D8-A1JD-01 4 90169141 90169141 G T GPRIN3 Silent p.I707I 0.22 TCGA-D8-A1JD-01 4 99358139 99358139 A G RAP1GDS1 Missense_Mutation p.H540R 0.22 deleterious(0.04) benign(0.255) TCGA-D8-A1JD-01 5 11082860 11082866 CACCGCG - CTNND2 Frame_Shift_Del p.C910Wfs*26 0.19 TCGA-D8-A1JD-01 5 150704868 150704868 C T SLC36A2 Missense_Mutation p.S330N 0.19 deleterious(0) benign(0.21) TCGA-D8-A1JD-01 5 176815139 176815139 T A SLC34A1 Silent p.A263A 0.31 TCGA-D8-A1JD-01 6 116821736 116821736 G T TRAPPC3L Missense_Mutation p.L112M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JD-01 6 152671436 152671436 T G SYNE1 Missense_Mutation p.D3923A 0.22 benign(0.118) TCGA-D8-A1JD-01 6 32007206 32007206 G A CYP21A2 Missense_Mutation p.C174Y 0.22 deleterious(0.03) benign(0.16) TCGA-D8-A1JD-01 7 21640549 21640549 G A DNAH11 Splice_Site p.X1085_splice 0.25 TCGA-D8-A1JD-01 7 47925506 47925506 C T PKD1L1 Missense_Mutation p.V995M 0.26 tolerated(0.33) benign(0.004) TCGA-D8-A1JD-01 7 66456261 66456261 C G SBDS Missense_Mutation p.E163Q 0.16 tolerated(0.11) benign(0.178) TCGA-D8-A1JD-01 7 86522326 86522326 A T KIAA1324L Missense_Mutation p.F926I 0.17 deleterious(0.01) possibly_damaging(0.903) TCGA-D8-A1JD-01 7 90585061 90585061 G C CDK14 Silent p.V274V 0.41 TCGA-D8-A1JD-01 8 104831623 104831632 GGAGAAATAT - RIMS2 Intron 0.29 TCGA-D8-A1JD-01 8 35563455 35563455 C A UNC5D Missense_Mutation p.P365T 0.19 tolerated(0.43) benign(0.048) TCGA-D8-A1JD-01 8 43046629 43046629 C G HGSNAT Missense_Mutation p.L381V 0.38 tolerated(0.5) benign(0.026) TCGA-D8-A1JD-01 9 136649470 136649470 T G VAV2 Missense_Mutation p.T535P 0.10 deleterious(0.03) benign(0.36) TCGA-D8-A1JD-01 X 100105295 100105295 A G NOX1 Silent p.F326F 0.13 TCGA-D8-A1JD-01 X 100530996 100530996 T A TAF7L Missense_Mutation p.T426S 0.12 deleterious(0.01) benign(0.017) TCGA-D8-A1JD-01 X 100912452 100912452 G T ARMCX2 Silent p.P41P 0.33 TCGA-D8-A1JD-01 X 100912454 100912454 G C ARMCX2 Missense_Mutation p.P41A 0.31 tolerated_low_confidence(0.26) benign(0.002) TCGA-D8-A1JD-01 X 108695252 108695252 C T GUCY2F Missense_Mutation p.R491K 0.12 deleterious(0.02) benign(0.079) TCGA-D8-A1JD-01 X 142596768 142596768 T C SPANXN3 Missense_Mutation p.D101G 0.08 deleterious_low_confidence(0.01) benign(0.017) TCGA-D8-A1JD-01 X 147014003 147014003 G T FMR1 Missense_Mutation p.M230I 0.11 tolerated(0.05) possibly_damaging(0.817) TCGA-D8-A1JD-01 X 147014004 147014004 G A FMR1 Missense_Mutation p.G231S 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1JD-01 X 150909327 150909327 G C CNGA2 Missense_Mutation p.V146L 0.04 tolerated(0.11) benign(0.004) TCGA-D8-A1JD-01 X 153642519 153642519 G A TAZ Missense_Mutation p.R151K 0.16 tolerated_low_confidence(0.38) benign(0) TCGA-D8-A1JD-01 X 67937723 67937723 G C STARD8 Missense_Mutation p.D323H 0.12 deleterious(0.04) benign(0.033) TCGA-D8-A1JD-01 X 69385823 69385823 A G IGBP1 Missense_Mutation p.M338V 0.09 tolerated(0.07) benign(0.188) TCGA-D8-A1JD-01 X 75649889 75649890 TA - MAGEE1 Frame_Shift_Del p.K523Rfs*8 0.21 TCGA-D8-A1JE-01 10 129903220 129903220 T C MKI67 Missense_Mutation p.N2295S 0.24 tolerated(0.2) benign(0.426) TCGA-D8-A1JE-01 10 26446238 26446238 G A MYO3A Splice_Site p.X932_splice 0.24 TCGA-D8-A1JE-01 10 61833948 61833948 T C ANK3 Missense_Mutation p.N2231D 0.16 benign(0.002) TCGA-D8-A1JE-01 10 61835214 61835214 A T ANK3 Missense_Mutation p.S1809T 0.41 benign(0.023) TCGA-D8-A1JE-01 11 1855822 1855822 G T SYT8 Missense_Mutation p.W7C 0.25 tolerated_low_confidence(0.17) benign(0.043) TCGA-D8-A1JE-01 12 120794783 120794783 G A MSI1 Missense_Mutation p.P192S 0.12 deleterious(0.01) benign(0) TCGA-D8-A1JE-01 12 124094511 124094511 C G DDX55 Missense_Mutation p.P193A 0.36 deleterious(0) probably_damaging(0.971) TCGA-D8-A1JE-01 14 35222638 35222638 T G BAZ1A 3'UTR 0.12 TCGA-D8-A1JE-01 15 20488817 20488817 C A CHEK2P2 RNA 0.11 TCGA-D8-A1JE-01 16 15702217 15702217 T A KIAA0430 Silent p.T1371T 0.12 TCGA-D8-A1JE-01 16 21261144 21261144 A T ANKS4B Missense_Mutation p.N86I 0.31 deleterious(0.02) possibly_damaging(0.819) TCGA-D8-A1JE-01 16 70497609 70497609 A C FUK Missense_Mutation p.S56R 0.36 deleterious(0) probably_damaging(1) TCGA-D8-A1JE-01 17 72256446 72256446 G T TTYH2 3'UTR 0.28 TCGA-D8-A1JE-01 19 56466488 56466488 C T NLRP8 Missense_Mutation p.P355L 0.19 tolerated(0.48) benign(0.148) TCGA-D8-A1JE-01 1 152188195 152188195 G T HRNR Silent p.G1970G 0.06 TCGA-D8-A1JE-01 1 1638858 1638858 G A CDK11A Missense_Mutation p.P412L 0.22 deleterious(0) unknown(0) TCGA-D8-A1JE-01 1 16945338 16945338 G C RP5-1182A14.5 3'Flank 0.19 TCGA-D8-A1JE-01 1 170940889 170940889 A G MROH9 Missense_Mutation p.I161V 0.17 tolerated(0.25) benign(0.02) TCGA-D8-A1JE-01 1 182849707 182849707 G A DHX9 Missense_Mutation p.R863H 0.12 deleterious(0.05) probably_damaging(0.985) TCGA-D8-A1JE-01 1 200584501 200584501 C A KIF14 Missense_Mutation p.G450V 0.34 deleterious(0) probably_damaging(0.99) TCGA-D8-A1JE-01 1 217793197 217793197 T C GPATCH2 Missense_Mutation p.E234G 0.51 deleterious(0) benign(0.004) TCGA-D8-A1JE-01 20 31756984 31756984 C T BPIFA2 Silent p.C11C 0.33 TCGA-D8-A1JE-01 20 42143725 42143725 G A L3MBTL1 Silent p.A171A 0.39 TCGA-D8-A1JE-01 20 42161475 42161475 G A L3MBTL1 Silent p.P427P 0.34 TCGA-D8-A1JE-01 22 37695271 37695271 C T CYTH4 Missense_Mutation p.P120S 0.21 tolerated(0.14) benign(0.023) TCGA-D8-A1JE-01 2 217525400 217525400 T C IGFBP2 Missense_Mutation p.L188P 0.24 tolerated(0.15) possibly_damaging(0.878) TCGA-D8-A1JE-01 2 25457218 25457218 C T DNMT3A Missense_Mutation p.G890D 0.37 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JE-01 2 61009838 61009838 G T PAPOLG Nonsense_Mutation p.E349* 0.20 TCGA-D8-A1JE-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.43 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A1JE-01 3 38520670 38520670 A T ACVR2B Nonsense_Mutation p.K240* 0.24 TCGA-D8-A1JE-01 3 9911640 9911640 G A CIDEC Silent p.N170N 0.19 TCGA-D8-A1JE-01 4 126320040 126320041 TA - FAT4 Frame_Shift_Del p.M1760Afs*8 0.17 TCGA-D8-A1JE-01 5 140167729 140167729 G A PCDHA1 Silent p.A618A 0.35 TCGA-D8-A1JE-01 5 89970042 89970042 C T GPR98 Missense_Mutation p.H1701Y 0.34 possibly_damaging(0.775) TCGA-D8-A1JE-01 6 57012098 57012098 C A ZNF451 Missense_Mutation p.S405R 0.39 tolerated(0.14) benign(0.174) TCGA-D8-A1JE-01 8 22102557 22102557 G T POLR3D 5'Flank 0.36 TCGA-D8-A1JE-01 8 28981618 28981618 C T KIF13B Missense_Mutation p.R1092H 0.20 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JE-01 8 32620793 32620793 G T NRG1 Intron 0.18 TCGA-D8-A1JE-01 8 53580718 53580718 C T RB1CC1 Missense_Mutation p.E346K 0.05 deleterious(0) benign(0.075) TCGA-D8-A1JE-01 9 15490026 15490026 C A PSIP1 Missense_Mutation p.W82C 0.13 deleterious(0.04) probably_damaging(0.98) TCGA-D8-A1JE-01 9 99797047 99797047 G A CTSV Missense_Mutation p.A289V 0.18 tolerated(0.21) benign(0.001) TCGA-D8-A1JF-01 10 63851397 63851397 G C ARID5B Missense_Mutation p.R725S 0.21 tolerated(0.42) probably_damaging(0.942) TCGA-D8-A1JF-01 11 55703086 55703086 G C OR5I1 Missense_Mutation p.P264R 0.40 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JF-01 11 63753882 63753882 G C OTUB1 5'Flank 0.27 TCGA-D8-A1JF-01 11 88583174 88583174 C T GRM5 Missense_Mutation p.A271T 0.30 deleterious(0.01) probably_damaging(0.956) TCGA-D8-A1JF-01 12 31579329 31579329 T C DENND5B Silent p.G712G 0.23 TCGA-D8-A1JF-01 12 39734847 39734848 - TTAA KIF21A Nonsense_Mutation p.K657Nfs*2 0.17 TCGA-D8-A1JF-01 12 45781974 45781974 G A ANO6 Missense_Mutation p.R420H 0.15 deleterious(0) probably_damaging(0.965) TCGA-D8-A1JF-01 14 22957612 22957612 G A TRAJ50 Silent p.G11G 0.23 TCGA-D8-A1JF-01 14 94845890 94845890 C T SERPINA1 Missense_Mutation p.V326I 0.19 tolerated(1) benign(0.037) TCGA-D8-A1JF-01 15 65490682 65490682 C T CILP Missense_Mutation p.E648K 0.20 deleterious(0) benign(0.254) TCGA-D8-A1JF-01 16 84778300 84778300 G T USP10 Missense_Mutation p.L71F 0.25 tolerated_low_confidence(0.37) benign(0.288) TCGA-D8-A1JF-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.54 deleterious(0) probably_damaging(1) TCGA-D8-A1JF-01 17 8051116 8051116 G A PER1 Missense_Mutation p.H422Y 0.50 tolerated(0.62) benign(0.418) TCGA-D8-A1JF-01 18 34297797 34297797 T G FHOD3 Missense_Mutation p.L671V 0.28 tolerated(0.36) benign(0.097) TCGA-D8-A1JF-01 19 12639170 12639171 - T ZNF564 Frame_Shift_Ins p.W47Mfs*7 0.40 TCGA-D8-A1JF-01 19 46282601 46282601 T G DMPK Missense_Mutation p.E128A 0.45 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JF-01 1 114377000 114377000 T A PTPN22 Silent p.T652T 0.17 TCGA-D8-A1JF-01 1 214832191 214832191 A G CENPF Splice_Site p.X2988_splice 0.20 TCGA-D8-A1JF-01 1 22304922 22304922 C T CELA3B Missense_Mutation p.A35V 0.54 tolerated(0.18) possibly_damaging(0.564) TCGA-D8-A1JF-01 1 70712533 70712533 G C SRSF11 Missense_Mutation p.R322P 0.15 deleterious(0.01) unknown(0) TCGA-D8-A1JF-01 20 21689306 21689306 C A PAX1 Missense_Mutation p.P343T 0.27 deleterious_low_confidence(0.04) benign(0.046) TCGA-D8-A1JF-01 20 31294404 31294404 G A COMMD7 Missense_Mutation p.A106V 0.45 tolerated(0.06) possibly_damaging(0.789) TCGA-D8-A1JF-01 20 35731179 35731179 G C MROH8 Missense_Mutation p.L1041V 0.59 deleterious(0.04) probably_damaging(0.998) TCGA-D8-A1JF-01 20 57036021 57036021 C T APCDD1L Missense_Mutation p.R444H 0.26 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JF-01 21 41710185 41710185 G A DSCAM Silent p.N542N 0.28 TCGA-D8-A1JF-01 22 40661738 40661738 A G TNRC6B Missense_Mutation p.M502V 0.36 tolerated(0.52) benign(0.001) TCGA-D8-A1JF-01 2 110259085 110259085 G A SH3RF3 Missense_Mutation p.R829H 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A1JF-01 2 166221684 166221684 G A SCN2A Missense_Mutation p.S1144N 0.29 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JF-01 2 17997955 17997955 C T MSGN1 Missense_Mutation p.S57F 0.44 tolerated(0.37) possibly_damaging(0.48) TCGA-D8-A1JF-01 2 219296898 219296898 G A VIL1 Missense_Mutation p.V445I 0.15 tolerated(0.94) benign(0.001) TCGA-D8-A1JF-01 2 233757737 233757737 C T NGEF Missense_Mutation p.R338Q 0.21 deleterious(0) probably_damaging(0.987) TCGA-D8-A1JF-01 2 238253585 238253585 G A COL6A3 Silent p.Y2391Y 0.16 TCGA-D8-A1JF-01 3 172098814 172098814 A G FNDC3B Silent p.P1078P 0.53 TCGA-D8-A1JF-01 3 178927430 178927430 G A PIK3CA Missense_Mutation p.R398H 0.20 tolerated(0.08) possibly_damaging(0.884) TCGA-D8-A1JF-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.53 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1JF-01 5 140174848 140174848 C T PCDHA2 Missense_Mutation p.A100V 0.23 tolerated_low_confidence(0.15) benign(0.107) TCGA-D8-A1JF-01 5 72858604 72858604 G A ANKRA2 Missense_Mutation p.P35S 0.12 tolerated_low_confidence(0.32) benign(0.001) TCGA-D8-A1JF-01 6 135358867 135358867 C G HBS1L Intron 0.22 TCGA-D8-A1JF-01 6 137482869 137482869 G A IL22RA2 Silent p.C6C 0.45 TCGA-D8-A1JF-01 6 35261689 35261689 G A ZNF76 Silent p.Q497Q 0.18 TCGA-D8-A1JF-01 7 106762423 106762425 GAA - PRKAR2B In_Frame_Del p.E126del 0.10 TCGA-D8-A1JF-01 7 142572900 142572900 A G TRPV6 Silent p.P380P 0.10 TCGA-D8-A1JF-01 7 55211097 55211097 G A EGFR Missense_Mutation p.E114K 0.50 deleterious(0.04) benign(0.016) TCGA-D8-A1JF-01 8 12956964 12956964 G T DLC1 Missense_Mutation p.P961H 0.40 deleterious(0.02) probably_damaging(0.91) TCGA-D8-A1JF-01 8 27461880 27461880 T C CLU Missense_Mutation p.I288V 0.62 deleterious(0.04) possibly_damaging(0.851) TCGA-D8-A1JF-01 8 27922210 27922210 G C NUGGC Silent p.R250R 0.07 TCGA-D8-A1JF-01 9 33923840 33923841 - GGG UBAP2 In_Frame_Ins p.P916dup 0.13 TCGA-D8-A1JF-01 9 66466303 66466303 G A RP11-262H14.1 RNA 0.56 TCGA-D8-A1JF-01 X 105865940 105865940 C - CXorf57 Frame_Shift_Del p.P235Lfs*5 0.14 TCGA-D8-A1JF-01 X 133979418 133979418 A - FAM122C Frame_Shift_Del p.G112Afs*2 0.24 TCGA-D8-A1JF-01 X 134992588 134992588 C T SAGE1 Missense_Mutation p.H627Y 0.13 tolerated(0.05) probably_damaging(0.993) TCGA-D8-A1JF-01 X 151896226 151896226 G A MAGEA12 3'Flank 0.18 TCGA-D8-A1JF-01 X 48853758 48853758 T A GRIPAP1 Silent p.V70V 0.25 TCGA-D8-A1JF-01 X 49845354 49845354 G A CLCN5 Missense_Mutation p.C236Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JF-01 X 50031866 50031866 A C CCNB3 Silent p.S61S 0.20 TCGA-D8-A1JG-01 10 25231270 25231270 G C PRTFDC1 Missense_Mutation p.I48M 0.05 deleterious(0.03) benign(0.345) TCGA-D8-A1JG-01 10 52103816 52103816 G A SGMS1 Missense_Mutation p.A20V 0.19 deleterious(0) possibly_damaging(0.799) TCGA-D8-A1JG-01 11 104970133 104970133 T G CARD17 Missense_Mutation p.N97T 0.09 tolerated(0.22) benign(0.018) TCGA-D8-A1JG-01 11 113283314 113283314 C G DRD2 Missense_Mutation p.E368Q 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A1JG-01 11 124502285 124502285 G T TBRG1 3'UTR 0.20 TCGA-D8-A1JG-01 11 13381930 13381930 A T ARNTL Missense_Mutation p.T140S 0.17 tolerated(1) benign(0.001) TCGA-D8-A1JG-01 11 18158830 18158830 C A MRGPRX3 Silent p.T27T 0.13 TCGA-D8-A1JG-01 11 3838636 3838636 G A PGAP2 Silent p.G73G 0.05 TCGA-D8-A1JG-01 11 4976079 4976079 T G OR51A2 Missense_Mutation p.K289Q 0.17 deleterious(0) benign(0.004) TCGA-D8-A1JG-01 11 55322524 55322524 T C OR4C15 Missense_Mutation p.F248L 0.11 tolerated_low_confidence(0.84) benign(0.004) TCGA-D8-A1JG-01 11 55682047 55682047 T A OR5W2 Missense_Mutation p.E4D 0.17 tolerated(0.33) benign(0.011) TCGA-D8-A1JG-01 11 77690065 77690065 G A INTS4 Nonsense_Mutation p.R150* 0.07 TCGA-D8-A1JG-01 12 121603182 121603182 G A P2RX7 Missense_Mutation p.E186K 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-D8-A1JG-01 12 122217545 122217545 G C RHOF Missense_Mutation p.I165M 0.11 tolerated(0.26) benign(0.058) TCGA-D8-A1JG-01 12 122441598 122441598 C T WDR66 Silent p.I1126I 0.12 TCGA-D8-A1JG-01 12 123262167 123262167 C T CCDC62 Missense_Mutation p.L56F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JG-01 12 123815832 123815832 T G SBNO1 Missense_Mutation p.I334L 0.12 tolerated(0.24) benign(0.173) TCGA-D8-A1JG-01 12 130184703 130184703 G A TMEM132D Missense_Mutation p.T207M 0.54 tolerated(0.05) benign(0.143) TCGA-D8-A1JG-01 12 133250250 133250250 G C POLE Missense_Mutation p.L424V 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JG-01 12 27064219 27064219 C A ASUN Nonsense_Mutation p.E613* 0.10 TCGA-D8-A1JG-01 12 30888067 30888067 C T CAPRIN2 Missense_Mutation p.R215Q 0.25 tolerated(0.14) possibly_damaging(0.515) TCGA-D8-A1JG-01 12 49428430 49428430 C A KMT2D Missense_Mutation p.A3459S 0.08 probably_damaging(0.97) TCGA-D8-A1JG-01 12 78443778 78443778 G T NAV3 Missense_Mutation p.D677Y 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1JG-01 12 86373533 86373533 T A MGAT4C Missense_Mutation p.K324M 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-D8-A1JG-01 13 52707287 52707287 G A NEK3 Silent p.C487C 0.21 TCGA-D8-A1JG-01 14 24845639 24845639 C A NFATC4 Nonsense_Mutation p.C795* 0.20 TCGA-D8-A1JG-01 14 42356316 42356316 C A LRFN5 Missense_Mutation p.P163H 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A1JG-01 14 45599056 45599056 T G FKBP3 Missense_Mutation p.N87H 0.17 deleterious(0.05) benign(0.184) TCGA-D8-A1JG-01 14 63174447 63174447 C T KCNH5 Missense_Mutation p.E916K 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D8-A1JG-01 14 68042162 68042162 C G PLEKHH1 Missense_Mutation p.F714L 0.42 tolerated(0.7) benign(0.039) TCGA-D8-A1JG-01 14 72085583 72085583 A C SIPA1L1 Silent p.R536R 0.11 TCGA-D8-A1JG-01 14 89038412 89038412 G C ZC3H14 Missense_Mutation p.D92H 0.24 deleterious(0.05) probably_damaging(0.914) TCGA-D8-A1JG-01 14 95582133 95582133 G A DICER1 Missense_Mutation p.S593L 0.24 tolerated(0.2) benign(0.005) TCGA-D8-A1JG-01 14 99697761 99697761 G A BCL11B Silent p.S187S 0.42 TCGA-D8-A1JG-01 15 42041686 42041686 C T MGA Nonsense_Mutation p.Q1961* 0.36 TCGA-D8-A1JG-01 16 1989009 1989009 G A MSRB1 3'UTR 0.06 TCGA-D8-A1JG-01 16 20803563 20803563 G A ACSM3 Missense_Mutation p.R487Q 0.05 deleterious(0.02) probably_damaging(0.961) TCGA-D8-A1JG-01 16 30018196 30018196 G A DOC2A Missense_Mutation p.S263L 0.25 tolerated(0.08) benign(0.062) TCGA-D8-A1JG-01 16 69967002 69967002 C T WWP2 Intron 0.45 TCGA-D8-A1JG-01 16 72130772 72130772 C T DHX38 Silent p.S125S 0.52 TCGA-D8-A1JG-01 16 72166685 72166685 T C PMFBP1 Missense_Mutation p.N470S 0.09 tolerated(0.17) benign(0.048) TCGA-D8-A1JG-01 17 262973 262973 G A C17orf97 Silent p.P113P 0.23 TCGA-D8-A1JG-01 17 30321730 30321730 C G SUZ12 Missense_Mutation p.L529V 0.45 tolerated(0.08) benign(0.155) TCGA-D8-A1JG-01 17 36357250 36357250 G C RP11-1407O15.2 Missense_Mutation p.P335A 0.25 TCGA-D8-A1JG-01 17 36895484 36895488 TGTCT - PCGF2 Frame_Shift_Del p.Q76Hfs*11 0.17 TCGA-D8-A1JG-01 17 37883766 37883774 CTACGTTGC - ERBB2 In_Frame_Del p.Y1127_A1129del 0.25 TCGA-D8-A1JG-01 17 38508726 38508726 C T RARA Silent p.I258I 0.23 TCGA-D8-A1JG-01 17 38721654 38721654 A T CCR7 Missense_Mutation p.L3Q 0.16 tolerated_low_confidence(0.5) benign(0.053) TCGA-D8-A1JG-01 17 74382084 74382097 TGCTCCCGCGGCCC - SPHK1 Frame_Shift_Del p.L97Pfs*29 0.38 TCGA-D8-A1JG-01 17 7577073 7577073 G A TP53 Missense_Mutation p.L289F 0.17 tolerated(1) benign(0) TCGA-D8-A1JG-01 18 19995860 19995860 G T CTAGE1 Missense_Mutation p.L639I 0.32 tolerated(0.2) benign(0.412) TCGA-D8-A1JG-01 18 21140315 21140315 G A NPC1 Missense_Mutation p.P254L 0.41 deleterious(0.02) benign(0.157) TCGA-D8-A1JG-01 18 44416348 44416349 - T PIAS2 Frame_Shift_Ins p.A392Sfs*4 0.35 TCGA-D8-A1JG-01 18 47379861 47379861 G A MYO5B Silent p.F1393F 0.08 TCGA-D8-A1JG-01 18 54281805 54281805 T G TXNL1 Missense_Mutation p.K195N 0.11 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JG-01 18 73000318 73000318 A G TSHZ1 Missense_Mutation p.I941V 0.47 tolerated(0.27) benign(0.029) TCGA-D8-A1JG-01 19 17836889 17836889 C T MAP1S Silent p.S232S 0.32 TCGA-D8-A1JG-01 19 38160053 38160053 C A ZNF781 3'UTR 0.18 TCGA-D8-A1JG-01 19 40519819 40519819 G T ZNF546 Missense_Mutation p.E214D 0.29 deleterious(0.03) benign(0.025) TCGA-D8-A1JG-01 19 51526351 51526351 G T KLK11 Nonsense_Mutation p.C231* 0.29 TCGA-D8-A1JG-01 19 52477775 52477775 G A ZNF350 5'UTR 0.50 TCGA-D8-A1JG-01 19 52941953 52941953 G T ZNF534 Nonsense_Mutation p.E427* 0.13 TCGA-D8-A1JG-01 19 58384533 58384534 - T ZNF814 Frame_Shift_Ins p.R742Kfs*4 0.08 TCGA-D8-A1JG-01 19 59009984 59009984 G T SLC27A5 Silent p.I657I 0.27 TCGA-D8-A1JG-01 1 12835814 12835814 C T PRAMEF12 Missense_Mutation p.P139L 0.33 tolerated(0.3) benign(0) TCGA-D8-A1JG-01 1 12885009 12885009 A C PRAMEF11 Missense_Mutation p.L368V 0.11 deleterious(0) benign(0.134) TCGA-D8-A1JG-01 1 145536029 145536029 G A ITGA10 Nonsense_Mutation p.W707* 0.06 TCGA-D8-A1JG-01 1 157557342 157557342 G A FCRL4 Missense_Mutation p.P191S 0.16 tolerated(0.36) benign(0.182) TCGA-D8-A1JG-01 1 157650537 157650537 T C FCRL3 Missense_Mutation p.I661V 0.17 tolerated(1) benign(0.001) TCGA-D8-A1JG-01 1 158224317 158224317 G T CD1A 5'UTR 0.16 TCGA-D8-A1JG-01 1 171162534 171162534 G T FMO2 Nonsense_Mutation p.E65* 0.12 TCGA-D8-A1JG-01 1 19018346 19018346 C A PAX7 Missense_Mutation p.L229M 0.56 deleterious(0) possibly_damaging(0.908) TCGA-D8-A1JG-01 1 197032127 197032127 A C F13B Missense_Mutation p.F42C 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1JG-01 1 202304779 202304779 C T UBE2T Missense_Mutation p.R35Q 0.16 tolerated(0.27) benign(0.209) TCGA-D8-A1JG-01 1 204192633 204192633 G A PLEKHA6 Missense_Mutation p.R1038W 0.38 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-D8-A1JG-01 1 220824018 220824018 G A MARK1 Silent p.R509R 0.13 TCGA-D8-A1JG-01 1 23707817 23707817 G T TCEA3 3'UTR 0.23 TCGA-D8-A1JG-01 1 240969623 240969623 G T RGS7 Missense_Mutation p.F362L 0.20 deleterious(0) probably_damaging(0.99) TCGA-D8-A1JG-01 1 241798027 241798027 C A CHML Nonsense_Mutation p.E348* 0.12 TCGA-D8-A1JG-01 1 249212333 249212333 G A PGBD2 Missense_Mutation p.R517Q 0.43 deleterious(0.02) possibly_damaging(0.59) TCGA-D8-A1JG-01 1 27680340 27680340 G A SYTL1 Silent p.T562T 0.32 TCGA-D8-A1JG-01 1 67581050 67581050 C A C1orf141 Nonsense_Mutation p.E111* 0.13 TCGA-D8-A1JG-01 1 86591387 86591387 T G COL24A1 Missense_Mutation p.N211T 0.09 tolerated(0.19) benign(0.019) TCGA-D8-A1JG-01 20 33364231 33364231 G A NCOA6 Nonsense_Mutation p.Q86* 0.32 TCGA-D8-A1JG-01 20 57899430 57899430 C T EDN3 Silent p.H211H 0.24 TCGA-D8-A1JG-01 20 62871696 62871696 C T MYT1 Silent p.F1087F 0.15 TCGA-D8-A1JG-01 20 6759436 6759436 G C BMP2 Missense_Mutation p.K297N 0.18 deleterious(0) benign(0.126) TCGA-D8-A1JG-01 21 40571338 40571338 A C BRWD1 Silent p.A1668A 0.06 TCGA-D8-A1JG-01 22 22930906 22930906 G T IGLV2-33 Missense_Mutation p.G34V 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D8-A1JG-01 2 113830174 113830174 G A IL1F10 5'UTR 0.10 TCGA-D8-A1JG-01 2 153515520 153515520 C A PRPF40A Missense_Mutation p.R837I 0.10 deleterious(0.02) unknown(0) TCGA-D8-A1JG-01 2 153525674 153525674 G A PRPF40A Nonsense_Mutation p.R581* 0.11 TCGA-D8-A1JG-01 2 165969454 165969454 A G SCN3A Missense_Mutation p.Y1262H 0.18 deleterious(0) probably_damaging(0.988) TCGA-D8-A1JG-01 2 179296804 179296804 T C PRKRA 3'UTR 0.05 TCGA-D8-A1JG-01 2 179574368 179574368 C T TTN Missense_Mutation p.D9560N 0.15 TCGA-D8-A1JG-01 2 211503908 211503908 C A CPS1 Missense_Mutation p.T961K 0.34 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JG-01 2 228786260 228786260 G A DAW1 Missense_Mutation p.G399D 0.13 deleterious(0) probably_damaging(0.989) TCGA-D8-A1JG-01 2 28117484 28117484 G A BRE Missense_Mutation p.V21M 0.12 deleterious(0.04) possibly_damaging(0.61) TCGA-D8-A1JG-01 2 3743883 3743883 C A ALLC Missense_Mutation p.S229Y 0.06 deleterious(0.01) probably_damaging(0.934) TCGA-D8-A1JG-01 2 43937469 43937469 G A PLEKHH2 Silent p.P738P 0.30 TCGA-D8-A1JG-01 2 84934679 84934679 C T DNAH6 Missense_Mutation p.R2963C 0.06 deleterious(0) possibly_damaging(0.762) TCGA-D8-A1JG-01 2 86276027 86276027 A C POLR1A Missense_Mutation p.Y872D 0.16 deleterious(0.03) possibly_damaging(0.58) TCGA-D8-A1JG-01 2 96593131 96593131 T C ANKRD36C Intron 0.03 TCGA-D8-A1JG-01 2 98412831 98412831 C A TMEM131 Missense_Mutation p.R1017I 0.14 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JG-01 2 99175925 99175925 G C INPP4A Splice_Site p.X613_splice 0.29 TCGA-D8-A1JG-01 3 112185099 112185099 A C BTLA Silent p.V242V 0.11 TCGA-D8-A1JG-01 3 134977975 134977975 C A EPHB1 3'UTR 0.11 TCGA-D8-A1JG-01 3 151150694 151150694 C A MED12L 3'UTR 0.12 TCGA-D8-A1JG-01 3 175293910 175293910 T G NAALADL2 Missense_Mutation p.Y579D 0.05 deleterious(0.03) probably_damaging(0.95) TCGA-D8-A1JG-01 3 178928060 178928086 GCCAGTACCTCATGGATTAGAAGATTT - PIK3CA In_Frame_Del p.P447_L455del 0.30 TCGA-D8-A1JG-01 3 44285298 44285298 C T TOPAZ1 Missense_Mutation p.P434S 0.20 tolerated(0.96) benign(0.007) TCGA-D8-A1JG-01 3 49898960 49898960 G A CAMKV Missense_Mutation p.S118L 0.39 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JG-01 4 10079036 10079036 C G WDR1 Missense_Mutation p.V536L 0.41 tolerated(0.11) benign(0.04) TCGA-D8-A1JG-01 4 110448539 110448539 A G SEC24B Silent p.V1009V 0.08 TCGA-D8-A1JG-01 4 113189561 113189561 G A AP1AR Missense_Mutation p.R302Q 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D8-A1JG-01 4 119161726 119161726 C T NDST3 Silent p.Y722Y 0.23 TCGA-D8-A1JG-01 4 120072076 120072076 C A MYOZ2 Silent p.I42I 0.14 TCGA-D8-A1JG-01 4 125590359 125590359 C A ANKRD50 Missense_Mutation p.R1358I 0.04 deleterious(0.02) benign(0.4) TCGA-D8-A1JG-01 4 126411920 126411920 A C FAT4 Missense_Mutation p.K4648T 0.09 probably_damaging(0.994) TCGA-D8-A1JG-01 4 154315444 154315444 C G MND1 Missense_Mutation p.L103V 0.28 tolerated(0.18) benign(0.344) TCGA-D8-A1JG-01 4 177142658 177142658 C A ASB5 Missense_Mutation p.A160S 0.28 deleterious(0.04) probably_damaging(0.977) TCGA-D8-A1JG-01 4 184615842 184615842 T C TRAPPC11 Missense_Mutation p.V865A 0.07 tolerated(0.11) benign(0.025) TCGA-D8-A1JG-01 4 40121887 40121887 C A N4BP2 Missense_Mutation p.S719Y 0.25 tolerated(0.12) benign(0.11) TCGA-D8-A1JG-01 4 47163380 47163380 C T GABRB1 Missense_Mutation p.P119S 0.06 deleterious(0.04) probably_damaging(0.994) TCGA-D8-A1JG-01 4 69195986 69195986 G T YTHDC1 Missense_Mutation p.L389I 0.12 deleterious(0.05) possibly_damaging(0.559) TCGA-D8-A1JG-01 4 71500234 71500234 G T ENAM Missense_Mutation p.K140N 0.31 tolerated(0.18) benign(0.009) TCGA-D8-A1JG-01 4 76570820 76570820 G A G3BP2 Nonsense_Mutation p.R415* 0.06 TCGA-D8-A1JG-01 4 77089570 77089570 T A SCARB2 Missense_Mutation p.K391N 0.12 deleterious(0.01) benign(0.14) TCGA-D8-A1JG-01 4 88723554 88723554 C T IBSP Missense_Mutation p.A14V 0.20 deleterious(0.05) benign(0.257) TCGA-D8-A1JG-01 4 90856183 90856183 C T MMRN1 Missense_Mutation p.P451L 0.10 deleterious(0) probably_damaging(0.93) TCGA-D8-A1JG-01 4 95198173 95198173 G T SMARCAD1 Missense_Mutation p.A649S 0.15 tolerated(0.06) benign(0.122) TCGA-D8-A1JG-01 5 121411136 121411136 G A LOX Nonsense_Mutation p.R281* 0.29 TCGA-D8-A1JG-01 5 14363873 14363873 G A TRIO Silent p.E808E 0.24 TCGA-D8-A1JG-01 5 154275892 154275892 C T GEMIN5 Silent p.L1119L 0.09 TCGA-D8-A1JG-01 5 157182067 157182067 C G LSM11 Missense_Mutation p.S293C 0.14 tolerated(0.09) possibly_damaging(0.737) TCGA-D8-A1JG-01 5 169494675 169494675 C T DOCK2 Silent p.F1543F 0.20 TCGA-D8-A1JG-01 5 171766090 171766090 G C SH3PXD2B Silent p.A673A 0.26 TCGA-D8-A1JG-01 5 37169272 37169272 T G C5orf42 Missense_Mutation p.N2285T 0.15 deleterious(0.05) benign(0.327) TCGA-D8-A1JG-01 5 644516 644516 G A CEP72 Missense_Mutation p.A548T 0.04 tolerated(0.28) benign(0.021) TCGA-D8-A1JG-01 5 79030169 79030169 T G CMYA5 Missense_Mutation p.L1861V 0.37 probably_damaging(0.952) TCGA-D8-A1JG-01 5 79616317 79616317 G T SPZ1 Nonsense_Mutation p.E95* 0.33 TCGA-D8-A1JG-01 6 11191022 11191022 G C NEDD9 Missense_Mutation p.D360E 0.55 tolerated(0.41) probably_damaging(0.968) TCGA-D8-A1JG-01 6 117658501 117658501 C T ROS1 Nonsense_Mutation p.W1694* 0.27 TCGA-D8-A1JG-01 6 150067641 150067641 G A NUP43 5'UTR 0.45 TCGA-D8-A1JG-01 6 165715716 165715716 G A C6orf118 Missense_Mutation p.T32M 0.46 deleterious(0.04) benign(0.05) TCGA-D8-A1JG-01 6 170592574 170592574 C T DLL1 Missense_Mutation p.R598H 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JG-01 6 27278901 27278901 G A POM121L2 Missense_Mutation p.T350I 0.14 tolerated(0.07) benign(0.277) TCGA-D8-A1JG-01 6 28365909 28365909 C T ZSCAN12 Missense_Mutation p.E92K 0.17 deleterious(0) probably_damaging(0.992) TCGA-D8-A1JG-01 6 50740543 50740543 C T TFAP2D Missense_Mutation p.A442V 0.12 tolerated_low_confidence(0.12) benign(0.004) TCGA-D8-A1JG-01 6 75866154 75866154 G A COL12A1 Silent p.V1023V 0.36 TCGA-D8-A1JG-01 7 143792630 143792630 G A OR2A12 Missense_Mutation p.A144T 0.12 tolerated(0.08) benign(0.192) TCGA-D8-A1JG-01 7 20778650 20778650 C T ABCB5 Missense_Mutation p.T971M 0.33 deleterious(0) possibly_damaging(0.891) TCGA-D8-A1JG-01 7 73008600 73008600 G A MLXIPL Intron 0.11 TCGA-D8-A1JG-01 7 82545907 82545907 G A PCLO Nonsense_Mutation p.R3799* 0.10 TCGA-D8-A1JG-01 8 107781881 107781881 C T ABRA Missense_Mutation p.E180K 0.08 tolerated(0.07) benign(0.014) TCGA-D8-A1JG-01 8 110131723 110131723 G T TRHR 3'UTR 0.17 TCGA-D8-A1JG-01 8 30705357 30705357 C A TEX15 Nonsense_Mutation p.E393* 0.14 TCGA-D8-A1JG-01 8 57228667 57228667 T G SDR16C5 Silent p.T80T 0.21 TCGA-D8-A1JG-01 8 62578087 62578087 C T ASPH Intron 0.08 TCGA-D8-A1JG-01 8 72967727 72967727 C A TRPA1 Missense_Mutation p.K491N 0.16 deleterious(0.02) probably_damaging(1) TCGA-D8-A1JG-01 8 77765840 77765840 C T ZFHX4 Missense_Mutation p.S2228F 0.16 possibly_damaging(0.766) TCGA-D8-A1JG-01 8 81892669 81892669 C - PAG1 Splice_Site p.X312_splice 0.30 TCGA-D8-A1JG-01 8 99028810 99028810 C T MATN2 Missense_Mutation p.S539L 0.11 tolerated(0.78) benign(0.002) TCGA-D8-A1JG-01 9 111617531 111617531 C G ACTL7B Missense_Mutation p.G227A 0.30 tolerated(0.12) benign(0.109) TCGA-D8-A1JG-01 9 116186510 116186510 A G C9orf43 Missense_Mutation p.K241E 0.12 deleterious(0) possibly_damaging(0.539) TCGA-D8-A1JG-01 9 18684727 18684727 C T ADAMTSL1 Silent p.V501V 0.12 TCGA-D8-A1JG-01 9 34990601 34990601 G A DNAJB5 Intron 0.20 TCGA-D8-A1JG-01 9 71532631 71532631 T C PIP5K1B Silent p.G313G 0.12 TCGA-D8-A1JG-01 X 117053569 117053569 T C KLHL13 Missense_Mutation p.D165G 0.36 tolerated(0.27) benign(0.005) TCGA-D8-A1JG-01 X 144905707 144905707 C T SLITRK2 Silent p.T588T 0.20 TCGA-D8-A1JG-01 X 151899739 151899739 A G MAGEA12 3'UTR 0.24 TCGA-D8-A1JG-01 X 15609935 15609935 G A ACE2 Missense_Mutation p.L162F 0.08 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JG-01 X 21450849 21450849 C T CNKSR2 Silent p.T116T 0.34 TCGA-D8-A1JG-01 X 47088130 47088130 G T CDK16 Missense_Mutation p.G559V 0.15 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D8-A1JG-01 X 50350572 50350572 G A SHROOM4 Silent p.H1190H 0.16 TCGA-D8-A1JG-01 X 84561243 84561243 C A POF1B Nonsense_Mutation p.E421* 0.06 TCGA-D8-A1JH-01 10 81373003 81373003 A G SFTPA1 Silent p.Q132Q 0.05 TCGA-D8-A1JH-01 10 81373699 81373699 C G SFTPA1 Missense_Mutation p.P208A 0.04 tolerated(0.62) benign(0.205) TCGA-D8-A1JH-01 14 21836478 21836478 T C SUPT16H Missense_Mutation p.Y302C 0.22 deleterious(0) probably_damaging(0.957) TCGA-D8-A1JH-01 17 33281599 33281599 A G CCT6B Missense_Mutation p.I119T 0.26 tolerated(0.06) benign(0.399) TCGA-D8-A1JH-01 18 14543191 14543191 G A POTEC 5'Flank 0.20 TCGA-D8-A1JH-01 18 67684697 67684697 T A RTTN Missense_Mutation p.I2123F 0.17 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JH-01 19 44223848 44223848 G A IRGC Missense_Mutation p.A380T 0.28 tolerated(1) benign(0.001) TCGA-D8-A1JH-01 1 167935897 167935897 G A DCAF6 Missense_Mutation p.E64K 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-D8-A1JH-01 1 53675969 53675969 A G CPT2 Missense_Mutation p.N208S 0.21 tolerated(0.07) benign(0.011) TCGA-D8-A1JH-01 20 34313042 34313042 T A RBM39 Missense_Mutation p.D151V 0.16 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JH-01 22 35943099 35943099 C T RASD2 Silent p.P81P 0.19 TCGA-D8-A1JH-01 22 39917837 39917837 T C ATF4 Silent p.L96L 0.26 TCGA-D8-A1JH-01 2 202123066 202123066 G T CASP8 Missense_Mutation p.D38Y 0.22 deleterious_low_confidence(0.05) benign(0.058) TCGA-D8-A1JH-01 2 234669637 234669637 C T UGT1A8 Intron 0.06 TCGA-D8-A1JH-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.28 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A1JH-01 5 56178672 56178673 - ATCA MAP3K1 Frame_Shift_Ins p.I1217Nfs*23 0.41 TCGA-D8-A1JH-01 5 56184105 56184105 G C MAP3K1 Missense_Mutation p.C1437S 0.17 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JH-01 6 131925356 131925356 T C MED23 Missense_Mutation p.Y573C 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-D8-A1JH-01 7 14880851 14880851 G A DGKB Missense_Mutation p.S13L 0.27 tolerated(0.22) benign(0.03) TCGA-D8-A1JH-01 7 810225 810225 T G HEATR2 Missense_Mutation p.L634R 0.09 deleterious(0.02) benign(0.043) TCGA-D8-A1JH-01 8 53586424 53586424 C A RB1CC1 Missense_Mutation p.C328F 0.09 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JH-01 8 56863054 56863054 A - LYN Frame_Shift_Del p.E110Kfs*15 0.28 TCGA-D8-A1JH-01 9 72006643 72006643 G T FAM189A2 Missense_Mutation p.A426S 0.11 tolerated(0.15) benign(0.019) TCGA-D8-A1JH-01 X 2641396 2641396 G A CD99 Missense_Mutation p.G118R 0.23 tolerated(0.09) probably_damaging(0.998) TCGA-D8-A1JH-01 X 44922686 44922687 - A KDM6A Frame_Shift_Ins p.Q517Tfs*9 0.53 TCGA-D8-A1JH-01 X 48761977 48761977 C A SLC35A2 Intron 0.23 TCGA-D8-A1JH-01 X 49958929 49958929 G A AKAP4 Silent p.G145G 0.25 TCGA-D8-A1JI-01 10 89624272 89624273 - A PTEN Nonsense_Mutation p.Y16* 0.52 TCGA-D8-A1JI-01 11 120996488 120996488 G A TECTA Missense_Mutation p.G561S 0.72 tolerated(0.75) benign(0.063) TCGA-D8-A1JI-01 11 66033219 66033219 C T KLC2 Silent p.S476S 0.26 TCGA-D8-A1JI-01 11 66039643 66039643 G A RAB1B Missense_Mutation p.E35K 0.18 deleterious(0.01) possibly_damaging(0.449) TCGA-D8-A1JI-01 11 66039726 66039726 G T RAB1B Intron 0.20 TCGA-D8-A1JI-01 11 70224272 70224272 C T PPFIA1 Missense_Mutation p.S1174F 0.13 deleterious(0) benign(0.056) TCGA-D8-A1JI-01 11 70224377 70224377 C T PPFIA1 Intron 0.08 TCGA-D8-A1JI-01 11 70224428 70224428 C A PPFIA1 Intron 0.20 TCGA-D8-A1JI-01 12 52159702 52159702 G A SCN8A Missense_Mutation p.R931Q 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JI-01 12 52188168 52188168 G A SCN8A Missense_Mutation p.G1513E 0.36 deleterious(0.04) possibly_damaging(0.824) TCGA-D8-A1JI-01 12 70928673 70928673 C A PTPRB Silent p.L2048L 0.32 TCGA-D8-A1JI-01 13 24860370 24860370 G T SPATA13 Missense_Mutation p.V774L 0.73 tolerated(0.07) benign(0.137) TCGA-D8-A1JI-01 14 95562728 95562728 C T DICER1 Missense_Mutation p.C1510Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JI-01 15 101098984 101098984 G A RNU6-181P 3'Flank 0.14 TCGA-D8-A1JI-01 15 22473090 22473090 G T IGHV4OR15-8 Missense_Mutation p.P61T 0.15 deleterious(0.02) benign(0.272) TCGA-D8-A1JI-01 15 62283988 62283988 C T VPS13C Missense_Mutation p.G456E 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A1JI-01 15 91422703 91422703 G A FURIN Silent p.T361T 0.42 TCGA-D8-A1JI-01 16 2143858 2143858 C A PKD1 Missense_Mutation p.S3592I 0.45 possibly_damaging(0.558) TCGA-D8-A1JI-01 16 2225153 2225153 T C TRAF7 Splice_Site p.X462_splice 0.47 TCGA-D8-A1JI-01 17 73998015 73998015 G A CDK3 Silent p.K59K 0.39 TCGA-D8-A1JI-01 18 74625749 74625749 C T ZNF236 Nonsense_Mutation p.Q984* 0.42 TCGA-D8-A1JI-01 1 152648528 152648528 C T LCE2C Missense_Mutation p.P13S 0.06 tolerated_low_confidence(0.55) unknown(0) TCGA-D8-A1JI-01 1 159858227 159858227 C A CCDC19 Missense_Mutation p.R111L 0.45 deleterious(0) probably_damaging(1) TCGA-D8-A1JI-01 1 169770068 169770068 C A C1orf112 Missense_Mutation p.H8N 0.39 deleterious(0.05) possibly_damaging(0.533) TCGA-D8-A1JI-01 1 52222005 52222005 C T OSBPL9 Intron 0.11 TCGA-D8-A1JI-01 1 53927225 53927225 G A DMRTB1 Silent p.P219P 0.27 TCGA-D8-A1JI-01 20 44108628 44108628 C T WFDC2 Silent p.L90L 0.37 TCGA-D8-A1JI-01 2 102968408 102968408 T C IL1RL1 3'UTR 0.21 TCGA-D8-A1JI-01 2 152483718 152483718 T C NEB Missense_Mutation p.N3382S 0.27 possibly_damaging(0.542) TCGA-D8-A1JI-01 3 45030632 45030632 G A EXOSC7 Missense_Mutation p.E20K 0.11 tolerated(0.13) benign(0.009) TCGA-D8-A1JI-01 3 53260867 53260867 G A TKT Missense_Mutation p.P542L 0.42 tolerated(0.85) possibly_damaging(0.822) TCGA-D8-A1JI-01 4 104066442 104066442 C T CENPE Missense_Mutation p.S1541N 0.08 benign(0.004) TCGA-D8-A1JI-01 5 52338039 52338039 C T ITGA2 Silent p.L95L 0.09 TCGA-D8-A1JI-01 5 64081367 64081367 C T CWC27 Silent p.D152D 0.13 TCGA-D8-A1JI-01 6 43042419 43042419 C T KLC4 3'UTR 0.38 TCGA-D8-A1JI-01 6 53133826 53133826 G A ELOVL5 3'UTR 0.50 TCGA-D8-A1JI-01 7 107596054 107596054 G T LAMB1 Silent p.G904G 0.12 TCGA-D8-A1JI-01 7 128455958 128455958 C T CCDC136 Silent p.N1112N 0.13 TCGA-D8-A1JI-01 7 30876302 30876302 A G FAM188B Silent p.E387E 0.40 TCGA-D8-A1JI-01 X 118140133 118140133 A G LONRF3 Missense_Mutation p.K489E 0.35 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JI-01 X 118586830 118586830 A C SLC25A43 Silent p.I276I 0.12 TCGA-D8-A1JI-01 X 133923130 133923130 A G FAM122B Silent p.D106D 0.47 TCGA-D8-A1JI-01 X 51638615 51638615 A T MAGED1 Missense_Mutation p.D227V 0.12 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1JJ-01 10 101090540 101090540 G T CNNM1 Missense_Mutation p.V466L 0.30 deleterious(0) probably_damaging(0.995) TCGA-D8-A1JJ-01 10 134022579 134022579 G A STK32C Silent p.L426L 0.16 TCGA-D8-A1JJ-01 10 26830613 26830613 G A APBB1IP Missense_Mutation p.V383I 0.26 tolerated(0.08) possibly_damaging(0.809) TCGA-D8-A1JJ-01 10 8106058 8106058 T G GATA3 Missense_Mutation p.M294R 0.27 deleterious(0) benign(0.176) TCGA-D8-A1JJ-01 10 82249013 82249013 C T TSPAN14 Silent p.N8N 0.29 TCGA-D8-A1JJ-01 11 111953459 111953459 C G C11orf57 Silent p.L215L 0.25 TCGA-D8-A1JJ-01 11 120197937 120197937 C T TMEM136 5'UTR 0.18 TCGA-D8-A1JJ-01 11 131781417 131781417 C T NTM Silent p.L14L 0.10 TCGA-D8-A1JJ-01 11 5275627 5275627 A C HBG2 Silent p.T70T 0.11 TCGA-D8-A1JJ-01 11 56468516 56468516 T A OR9G1 Missense_Mutation p.L218H 0.09 tolerated(0.08) possibly_damaging(0.863) TCGA-D8-A1JJ-01 11 60064763 60064763 G A MS4A4A Missense_Mutation p.V99M 0.20 tolerated(0.08) possibly_damaging(0.523) TCGA-D8-A1JJ-01 12 50869470 50869470 G C LARP4 Missense_Mutation p.E666D 0.18 tolerated(0.35) benign(0.033) TCGA-D8-A1JJ-01 12 50869477 50869477 G A LARP4 Missense_Mutation p.E669K 0.18 deleterious(0.02) possibly_damaging(0.67) TCGA-D8-A1JJ-01 12 57929272 57929272 C T DCTN2 Missense_Mutation p.E92K 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JJ-01 13 111806290 111806290 C T ARHGEF7 Silent p.S68S 0.27 TCGA-D8-A1JJ-01 13 49781423 49781423 G A FNDC3A Silent p.R1163R 0.36 TCGA-D8-A1JJ-01 14 106610783 106610783 C T IGHV3-15 5'UTR 0.21 TCGA-D8-A1JJ-01 14 77818056 77818056 C A TMED8 Missense_Mutation p.A53S 0.20 tolerated_low_confidence(0.16) benign(0.021) TCGA-D8-A1JJ-01 15 28515846 28515846 G A HERC2 Missense_Mutation p.H418Y 0.32 possibly_damaging(0.541) TCGA-D8-A1JJ-01 15 65681677 65681677 G A IGDCC4 Silent p.G827G 0.08 TCGA-D8-A1JJ-01 15 73852248 73852248 G C C15orf60 Missense_Mutation p.L264F 0.29 tolerated(0.18) benign(0.099) TCGA-D8-A1JJ-01 16 15841442 15841442 C T MYH11 Missense_Mutation p.G806D 0.23 probably_damaging(1) TCGA-D8-A1JJ-01 16 53524272 53524272 C G RBL2 3'UTR 0.18 TCGA-D8-A1JJ-01 16 74505129 74505129 T C GLG1 Missense_Mutation p.N724S 0.49 tolerated(0.05) probably_damaging(0.979) TCGA-D8-A1JJ-01 17 15935743 15935743 G A NCOR1 Missense_Mutation p.P2397L 0.17 probably_damaging(0.999) TCGA-D8-A1JJ-01 17 47210440 47210440 G T B4GALNT2 Missense_Mutation p.R18L 0.14 deleterious_low_confidence(0.04) benign(0.25) TCGA-D8-A1JJ-01 17 58013897 58013897 C A RPS6KB1 Missense_Mutation p.L372M 0.13 tolerated(0.1) benign(0.366) TCGA-D8-A1JJ-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.56 deleterious(0) probably_damaging(1) TCGA-D8-A1JJ-01 17 76201787 76201787 G A AFMID Missense_Mutation p.E250K 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1JJ-01 17 79104969 79104969 C A AATK Missense_Mutation p.D76Y 0.27 deleterious(0) possibly_damaging(0.718) TCGA-D8-A1JJ-01 18 60646275 60646275 G A PHLPP1 Missense_Mutation p.E1589K 0.20 tolerated(0.2) benign(0.298) TCGA-D8-A1JJ-01 18 72103837 72103837 C A FAM69C Missense_Mutation p.V387F 0.17 tolerated(0.06) benign(0.135) TCGA-D8-A1JJ-01 18 72999873 72999873 C T TSHZ1 Silent p.L792L 0.09 TCGA-D8-A1JJ-01 19 17314024 17314024 C T MYO9B Silent p.C1649C 0.13 TCGA-D8-A1JJ-01 19 2097595 2097595 C A IZUMO4 Intron 0.24 TCGA-D8-A1JJ-01 19 49299687 49299687 G A BCAT2 Nonsense_Mutation p.Q380* 0.34 TCGA-D8-A1JJ-01 19 52538139 52538139 C G ZNF432 Missense_Mutation p.E265Q 0.07 deleterious(0.03) benign(0.402) TCGA-D8-A1JJ-01 19 53741204 53741204 C G ZNF677 Missense_Mutation p.R259T 0.17 tolerated(0.18) benign(0.19) TCGA-D8-A1JJ-01 19 55324735 55324735 G A KIR2DL4 Intron 0.57 TCGA-D8-A1JJ-01 1 12954760 12954760 T G PRAMEF10 Silent p.R175R 0.15 TCGA-D8-A1JJ-01 1 159846482 159846482 C T CCDC19 Missense_Mutation p.E406K 0.10 deleterious(0) probably_damaging(0.969) TCGA-D8-A1JJ-01 1 169698645 169698645 C T SELE Silent p.E295E 0.12 TCGA-D8-A1JJ-01 1 172502504 172502504 C T SUCO 5'UTR 0.07 TCGA-D8-A1JJ-01 1 202698100 202698100 G C KDM5B 3'UTR 0.64 TCGA-D8-A1JJ-01 1 214498008 214498008 G A SMYD2 Missense_Mutation p.E187K 0.13 tolerated(0.12) probably_damaging(0.911) TCGA-D8-A1JJ-01 1 247978780 247978780 C T OR14A16 Silent p.L84L 0.07 TCGA-D8-A1JJ-01 1 25572975 25572975 C T C1orf63 Silent p.T160T 0.17 TCGA-D8-A1JJ-01 1 39895660 39895660 G A MACF1 Missense_Mutation p.E3622K 0.18 benign(0.001) TCGA-D8-A1JJ-01 1 40697288 40697288 G A RLF Silent p.T349T 0.23 TCGA-D8-A1JJ-01 1 41473185 41473185 G A CTPS1 Missense_Mutation p.R454K 0.21 tolerated(0.3) benign(0.005) TCGA-D8-A1JJ-01 1 59248409 59248409 C T JUN Missense_Mutation p.E112K 0.11 deleterious(0.01) probably_damaging(0.969) TCGA-D8-A1JJ-01 21 30318584 30318584 G A LTN1 Silent p.F1217F 0.06 TCGA-D8-A1JJ-01 21 34963501 34963501 T A CRYZL1 Missense_Mutation p.D306V 0.20 deleterious(0) possibly_damaging(0.821) TCGA-D8-A1JJ-01 21 35467531 35467531 A G SLC5A3 Missense_Mutation p.I12V 0.33 tolerated(1) benign(0.001) TCGA-D8-A1JJ-01 22 50278870 50278870 G A ZBED4 Silent p.L520L 0.20 TCGA-D8-A1JJ-01 2 170081851 170081851 T C LRP2 Missense_Mutation p.Y1836C 0.19 probably_damaging(0.982) TCGA-D8-A1JJ-01 2 217285189 217285189 G A SMARCAL1 Missense_Mutation p.E344K 0.25 deleterious(0.05) probably_damaging(0.983) TCGA-D8-A1JJ-01 2 227924262 227924262 C T COL4A4 Missense_Mutation p.G748S 0.20 probably_damaging(0.937) TCGA-D8-A1JJ-01 2 231267638 231267638 C T SP140L 3'UTR 0.34 TCGA-D8-A1JJ-01 2 234890491 234890491 C G TRPM8 Missense_Mutation p.L841V 0.03 deleterious(0.01) benign(0.137) TCGA-D8-A1JJ-01 2 63217952 63217952 G A EHBP1 Missense_Mutation p.E975K 0.20 tolerated(0.06) benign(0.066) TCGA-D8-A1JJ-01 2 65245289 65245289 C T SLC1A4 Silent p.I373I 0.18 TCGA-D8-A1JJ-01 2 90139462 90139462 G T IGKV1D-16 Missense_Mutation p.S78I 0.16 deleterious(0.01) benign(0.111) TCGA-D8-A1JJ-01 2 96689146 96689146 A G GPAT2 Silent p.L647L 0.28 TCGA-D8-A1JJ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.35 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A1JJ-01 3 196817851 196817851 C T DLG1 Missense_Mutation p.M564I 0.41 tolerated(0.07) benign(0.107) TCGA-D8-A1JJ-01 3 43388879 43388879 C G SNRK Missense_Mutation p.D376E 0.50 tolerated(0.29) benign(0.114) TCGA-D8-A1JJ-01 5 140175977 140175977 G A PCDHA2 Silent p.T476T 0.43 TCGA-D8-A1JJ-01 5 140594357 140594357 C T PCDHB13 Missense_Mutation p.P221L 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-D8-A1JJ-01 5 32403302 32403302 C T ZFR Silent p.S475S 0.34 TCGA-D8-A1JJ-01 5 38924582 38924582 G A OSMR Silent p.L643L 0.29 TCGA-D8-A1JJ-01 5 43382081 43382081 C T CCL28 Missense_Mutation p.A89T 0.26 tolerated(0.37) benign(0.013) TCGA-D8-A1JJ-01 5 5191851 5191851 G A ADAMTS16 Missense_Mutation p.E421K 0.08 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JJ-01 5 79738999 79738999 C G ZFYVE16 Missense_Mutation p.S826C 0.04 deleterious(0.03) benign(0.024) TCGA-D8-A1JJ-01 6 155143458 155143458 C G SCAF8 Missense_Mutation p.T614R 0.10 tolerated(0.07) possibly_damaging(0.818) TCGA-D8-A1JJ-01 6 159188099 159188099 G A EZR Silent p.S536S 0.28 TCGA-D8-A1JJ-01 6 26444235 26444235 G A BTN3A3 Missense_Mutation p.E46K 0.05 deleterious(0.03) benign(0.133) TCGA-D8-A1JJ-01 6 31867836 31867836 C T ZBTB12 Missense_Mutation p.R416H 0.17 tolerated(0.33) possibly_damaging(0.522) TCGA-D8-A1JJ-01 6 43141677 43141677 G C SRF Silent p.L202L 0.38 TCGA-D8-A1JJ-01 7 148800755 148800755 C T ZNF425 Silent p.A736A 0.25 TCGA-D8-A1JJ-01 7 89982152 89982152 T C GTPBP10 Missense_Mutation p.L19P 0.13 deleterious(0) probably_damaging(0.988) TCGA-D8-A1JJ-01 8 124371840 124371840 C G ATAD2 Missense_Mutation p.D415H 0.24 deleterious(0) probably_damaging(0.971) TCGA-D8-A1JJ-01 8 12863718 12863718 C T KIAA1456 Missense_Mutation p.H3Y 0.22 tolerated(0.31) benign(0.002) TCGA-D8-A1JJ-01 8 53853440 53853440 C T NPBWR1 Missense_Mutation p.R325C 0.48 deleterious(0) probably_damaging(0.945) TCGA-D8-A1JJ-01 8 77767078 77767078 G A ZFHX4 Missense_Mutation p.E2641K 0.27 probably_damaging(0.98) TCGA-D8-A1JJ-01 8 95905064 95905064 G A CCNE2 Missense_Mutation p.S100L 0.12 deleterious(0) possibly_damaging(0.662) TCGA-D8-A1JJ-01 9 18887969 18887969 C G ADAMTSL1 Missense_Mutation p.Q1464E 0.22 tolerated(1) benign(0.008) TCGA-D8-A1JJ-01 9 20982406 20982406 G C FOCAD Missense_Mutation p.M1563I 0.39 deleterious(0.01) probably_damaging(0.91) TCGA-D8-A1JJ-01 X 117815153 117815153 C T DOCK11 Missense_Mutation p.S1935F 0.20 tolerated(0.18) possibly_damaging(0.693) TCGA-D8-A1JJ-01 X 125955390 125955390 C T CXorf64 Missense_Mutation p.P257S 0.23 tolerated(0.13) probably_damaging(0.932) TCGA-D8-A1JJ-01 X 129492680 129492680 C A SLC25A14 Missense_Mutation p.Q189K 0.10 tolerated(0.37) benign(0.361) TCGA-D8-A1JJ-01 X 133938227 133938227 C T FAM122C 5'Flank 0.13 TCGA-D8-A1JJ-01 X 133938261 133938261 C T FAM122C 5'Flank 0.13 TCGA-D8-A1JJ-01 X 135582352 135582352 G A HTATSF1 Missense_Mutation p.V135I 0.16 tolerated(0.1) probably_damaging(0.953) TCGA-D8-A1JJ-01 X 142718155 142718155 T C SLITRK4 Missense_Mutation p.N257S 0.25 tolerated(1) benign(0.251) TCGA-D8-A1JJ-01 X 49459364 49459364 G C PAGE1 Missense_Mutation p.L4V 0.06 deleterious_low_confidence(0.01) benign(0) TCGA-D8-A1JJ-01 X 63410674 63410674 A G AMER1 Silent p.D831D 0.34 TCGA-D8-A1JJ-01 X 65417628 65417628 C T HEPH Silent p.L589L 0.31 TCGA-D8-A1JK-01 10 129866537 129866537 G A PTPRE Missense_Mutation p.V332M 0.14 deleterious(0) probably_damaging(0.925) TCGA-D8-A1JK-01 10 13481140 13481140 G A BEND7 3'UTR 0.08 TCGA-D8-A1JK-01 10 16979758 16979758 G A CUBN Missense_Mutation p.A1920V 0.27 deleterious(0.03) benign(0.3) TCGA-D8-A1JK-01 10 25313411 25313411 T G THNSL1 Missense_Mutation p.I420R 0.11 deleterious(0) probably_damaging(0.917) TCGA-D8-A1JK-01 10 27475553 27475553 G T MASTL 3'UTR 0.28 TCGA-D8-A1JK-01 10 33218841 33218841 T C ITGB1 Silent p.V95V 0.35 TCGA-D8-A1JK-01 10 35930097 35930097 G C FZD8 Missense_Mutation p.F87L 0.35 deleterious(0.01) unknown(0) TCGA-D8-A1JK-01 10 38344917 38344918 CA - ZNF33A Frame_Shift_Del p.Q623Tfs*15 0.11 TCGA-D8-A1JK-01 10 95259866 95259879 AACTCCAAATCCGA - CEP55 Frame_Shift_Del p.S21Yfs*18 0.21 TCGA-D8-A1JK-01 10 97917833 97917834 AG - ZNF518A RNA 0.15 TCGA-D8-A1JK-01 11 105804480 105804480 G T GRIA4 Missense_Mutation p.W693C 0.12 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JK-01 11 132307135 132307135 T - OPCML Frame_Shift_Del p.V216* 0.27 TCGA-D8-A1JK-01 11 22646184 22646184 C A FANCF 3'UTR 0.19 TCGA-D8-A1JK-01 11 62752065 62752065 G A SLC22A6 Missense_Mutation p.S33F 0.06 deleterious(0.01) possibly_damaging(0.758) TCGA-D8-A1JK-01 11 63670121 63670122 AG - MARK2 Frame_Shift_Del p.S429* 0.63 TCGA-D8-A1JK-01 11 64110761 64110761 C T CCDC88B Silent p.N391N 0.23 TCGA-D8-A1JK-01 11 65088527 65088527 G C CDC42EP2 Missense_Mutation p.G53A 0.60 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 11 66618329 66618329 G A PC Silent p.F763F 0.12 TCGA-D8-A1JK-01 11 67947667 67947667 G A SUV420H1 Silent p.S103S 0.42 TCGA-D8-A1JK-01 11 73849780 73849780 T A C2CD3 Nonsense_Mutation p.K314* 0.65 TCGA-D8-A1JK-01 11 77333553 77333554 TC - CLNS1A Frame_Shift_Del p.D213Lfs*2 0.24 TCGA-D8-A1JK-01 12 10959166 10959166 A G TAS2R8 Silent p.F138F 0.13 TCGA-D8-A1JK-01 12 11091413 11091413 C T TAS2R14 Missense_Mutation p.V132M 0.21 tolerated(0.25) benign(0.223) TCGA-D8-A1JK-01 12 111085556 111085556 C A TCTN1 Silent p.A546A 0.20 TCGA-D8-A1JK-01 12 112589696 112589696 T A TRAFD1 Missense_Mutation p.N457K 0.22 deleterious(0.01) possibly_damaging(0.628) TCGA-D8-A1JK-01 12 122794401 122794402 TC - CLIP1 Frame_Shift_Del p.K1168Vfs*13 0.25 TCGA-D8-A1JK-01 12 123201043 123201043 G C HCAR3 Missense_Mutation p.P81R 0.16 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 12 124421709 124421709 C A CCDC92 Missense_Mutation p.A298S 0.16 tolerated_low_confidence(0.33) benign(0.119) TCGA-D8-A1JK-01 12 20806958 20806958 G T PDE3A Missense_Mutation p.Q1001H 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 12 50026868 50026868 C T PRPF40B Silent p.S140S 0.10 TCGA-D8-A1JK-01 12 50385837 50385837 A C RACGAP1 Missense_Mutation p.L553R 0.10 tolerated(0.42) benign(0.013) TCGA-D8-A1JK-01 12 53567239 53567239 C A CSAD Missense_Mutation p.A33S 0.13 tolerated(0.41) benign(0.004) TCGA-D8-A1JK-01 12 56119345 56119345 C T CD63 Silent p.%3D 0.16 TCGA-D8-A1JK-01 12 57007800 57007800 G T BAZ2A Missense_Mutation p.Q287K 0.39 tolerated(0.55) probably_damaging(0.966) TCGA-D8-A1JK-01 12 8211623 8211623 G C C3AR1 Missense_Mutation p.L387V 0.36 deleterious(0.05) benign(0.315) TCGA-D8-A1JK-01 12 88496844 88496844 C T CEP290 Intron 0.57 TCGA-D8-A1JK-01 12 9221429 9221429 G A A2M Nonsense_Mutation p.Q1425* 0.11 TCGA-D8-A1JK-01 12 9750720 9750721 AG - KLRB1 Frame_Shift_Del p.L151Vfs*25 0.13 TCGA-D8-A1JK-01 13 25399899 25399899 C G RNF17 Missense_Mutation p.A745G 0.27 deleterious(0) probably_damaging(0.983) TCGA-D8-A1JK-01 14 102467495 102467495 T C DYNC1H1 Missense_Mutation p.V1400A 0.42 possibly_damaging(0.852) TCGA-D8-A1JK-01 14 20296402 20296402 C A OR4N2 Missense_Mutation p.F265L 0.04 tolerated(0.37) benign(0.019) TCGA-D8-A1JK-01 14 24571997 24571997 T C PCK2 Missense_Mutation p.F424L 0.30 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JK-01 14 24648865 24648865 G A REC8 Missense_Mutation p.V461M 0.27 tolerated(0.18) benign(0.318) TCGA-D8-A1JK-01 14 34269012 34269012 G A NPAS3 Missense_Mutation p.R500Q 0.22 tolerated(0.43) benign(0.082) TCGA-D8-A1JK-01 14 35488263 35488263 A C SRP54 Missense_Mutation p.D380A 0.15 deleterious(0) probably_damaging(0.932) TCGA-D8-A1JK-01 14 59789814 59789814 G C DAAM1 Missense_Mutation p.E215D 0.28 tolerated(0.15) unknown(0) TCGA-D8-A1JK-01 14 67784190 67784190 A C MPP5 Missense_Mutation p.N455H 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-D8-A1JK-01 14 73576109 73576109 G A RBM25 Missense_Mutation p.R534Q 0.13 benign(0.238) TCGA-D8-A1JK-01 14 97322913 97322916 AAAC - VRK1 Frame_Shift_Del p.K295Qfs*11 0.13 TCGA-D8-A1JK-01 15 29091055 29091055 C A GOLGA6L7P RNA 0.27 TCGA-D8-A1JK-01 15 40246168 40246168 A T EIF2AK4 Nonsense_Mutation p.K193* 0.28 TCGA-D8-A1JK-01 15 65871806 65871806 A G VWA9 Silent p.Y442Y 0.15 TCGA-D8-A1JK-01 15 65968860 65968860 T C DENND4A Missense_Mutation p.Q1430R 0.07 tolerated(0.6) benign(0.269) TCGA-D8-A1JK-01 15 66022017 66022017 C T DENND4A Splice_Site p.X389_splice 0.11 TCGA-D8-A1JK-01 15 99673182 99673182 G A SYNM Silent p.R1538R 0.28 TCGA-D8-A1JK-01 16 12758891 12758891 G C CPPED1 Missense_Mutation p.A266G 0.14 deleterious(0) probably_damaging(0.971) TCGA-D8-A1JK-01 16 16208804 16208804 C A ABCC1 Silent p.I1087I 0.10 TCGA-D8-A1JK-01 16 19194881 19194881 C T SYT17 Silent p.L121L 0.17 TCGA-D8-A1JK-01 16 22926863 22926863 C T HS3ST2 Nonsense_Mutation p.Q362* 0.22 TCGA-D8-A1JK-01 16 24582365 24582370 TGAATC - RBBP6 In_Frame_Del p.S1328_E1329del 0.20 TCGA-D8-A1JK-01 16 30081596 30081596 G C ALDOA 3'UTR 0.11 TCGA-D8-A1JK-01 16 50353829 50353829 G T BRD7 Silent p.V624V 0.33 TCGA-D8-A1JK-01 16 57596304 57596304 G A GPR114 Missense_Mutation p.E25K 0.23 tolerated(0.46) benign(0) TCGA-D8-A1JK-01 16 66783211 66783211 C G DYNC1LI2 Missense_Mutation p.D63H 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-D8-A1JK-01 16 698415 698415 G C FAM195A 3'UTR 0.55 TCGA-D8-A1JK-01 16 87874747 87874747 G C SLC7A5 Missense_Mutation p.L227V 0.11 deleterious(0.02) possibly_damaging(0.734) TCGA-D8-A1JK-01 17 10358115 10358115 G A MYH4 Silent p.F816F 0.34 TCGA-D8-A1JK-01 17 16012203 16012203 C A NCOR1 Missense_Mutation p.E693D 0.43 benign(0.171) TCGA-D8-A1JK-01 17 18923719 18923719 T C SLC5A10 Missense_Mutation p.I605T 0.11 deleterious(0) possibly_damaging(0.475) TCGA-D8-A1JK-01 17 35902621 35902621 A T SYNRG Missense_Mutation p.N885K 0.21 deleterious_low_confidence(0.02) benign(0.053) TCGA-D8-A1JK-01 17 35946532 35946532 C A SYNRG Missense_Mutation p.E122D 0.45 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-D8-A1JK-01 17 40481654 40481654 A T STAT3 Missense_Mutation p.F384Y 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1JK-01 17 43220876 43220876 T C ACBD4 Silent p.S298S 0.37 TCGA-D8-A1JK-01 17 61901303 61901304 - T FTSJ3 Frame_Shift_Ins p.K389Efs*5 0.09 TCGA-D8-A1JK-01 17 62474097 62474097 T C POLG2 Missense_Mutation p.E434G 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 17 641191 641191 T A FAM57A Silent p.R104R 0.53 TCGA-D8-A1JK-01 17 73096259 73096259 C A SLC16A5 Silent p.G167G 0.09 TCGA-D8-A1JK-01 17 73519828 73519828 T G TSEN54 Silent p.P466P 0.14 TCGA-D8-A1JK-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.53 TCGA-D8-A1JK-01 17 79991732 79991732 C A RAC3 3'UTR 0.45 TCGA-D8-A1JK-01 17 80041280 80041280 T C FASN Missense_Mutation p.N1788S 0.08 deleterious(0.01) probably_damaging(1) TCGA-D8-A1JK-01 18 18572891 18572891 A G ROCK1 Silent p.I631I 0.30 TCGA-D8-A1JK-01 18 21739933 21739933 G T CABYR Nonsense_Mutation p.G347* 0.17 TCGA-D8-A1JK-01 18 2934386 2934386 G T LPIN2 Missense_Mutation p.L411I 0.13 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JK-01 18 31326469 31326469 C T ASXL3 Silent p.A2219A 0.15 TCGA-D8-A1JK-01 18 3582137 3582137 C A DLGAP1 Missense_Mutation p.Q567H 0.14 tolerated(0.16) probably_damaging(0.997) TCGA-D8-A1JK-01 18 7011398 7011400 GTA - LAMA1 In_Frame_Del p.Y1196del 0.39 TCGA-D8-A1JK-01 18 76974004 76974004 G A ATP9B Missense_Mutation p.R358Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JK-01 18 8796352 8796352 C A SOGA2 Silent p.L711L 0.14 TCGA-D8-A1JK-01 19 11527722 11527722 G A RGL3 Silent p.P53P 0.34 TCGA-D8-A1JK-01 19 12125835 12125835 T A ZNF433 Missense_Mutation p.K616I 0.17 deleterious(0) probably_damaging(0.976) TCGA-D8-A1JK-01 19 1440092 1440092 C G RPS15 Missense_Mutation p.S55C 0.25 deleterious(0.05) benign(0.016) TCGA-D8-A1JK-01 19 23578214 23578214 G T ZNF91 5'UTR 0.38 TCGA-D8-A1JK-01 19 3207193 3207193 C G NCLN Intron 0.32 TCGA-D8-A1JK-01 19 45851256 45851256 G A KLC3 Missense_Mutation p.R206H 0.39 deleterious(0.04) possibly_damaging(0.605) TCGA-D8-A1JK-01 19 50154334 50154334 C G SCAF1 Missense_Mutation p.P230A 0.29 unknown(0) TCGA-D8-A1JK-01 19 58290364 58290364 C T ZNF586 Missense_Mutation p.L137F 0.08 tolerated(0.38) possibly_damaging(0.539) TCGA-D8-A1JK-01 19 58371291 58371291 G T ZNF587 Missense_Mutation p.S504I 0.12 tolerated(0.07) possibly_damaging(0.766) TCGA-D8-A1JK-01 1 10332316 10332316 T C KIF1B Silent p.N272N 0.16 TCGA-D8-A1JK-01 1 145325994 145325994 G A NBPF10 Silent p.L1289L 0.23 TCGA-D8-A1JK-01 1 145325995 145325995 C A NBPF10 Missense_Mutation p.Q1290K 0.24 probably_damaging(0.93) TCGA-D8-A1JK-01 1 150234993 150234993 C A CA14 Missense_Mutation p.L157M 0.45 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JK-01 1 151747894 151747894 A T TDRKH Missense_Mutation p.Y470N 0.08 tolerated(0.36) benign(0.042) TCGA-D8-A1JK-01 1 152286937 152286937 T A FLG Missense_Mutation p.K142M 0.12 probably_damaging(0.947) TCGA-D8-A1JK-01 1 155145857 155145857 T C RP11-201K10.3 Missense_Mutation p.R48G 0.55 unknown(0) TCGA-D8-A1JK-01 1 155340680 155340680 C - ASH1L Frame_Shift_Del p.E2143Nfs*18 0.25 TCGA-D8-A1JK-01 1 155649273 155649273 C T YY1AP1 Missense_Mutation p.E156K 0.32 deleterious(0.02) probably_damaging(0.919) TCGA-D8-A1JK-01 1 161094135 161094136 TG - DEDD Frame_Shift_Del p.H39Qfs*12 0.11 TCGA-D8-A1JK-01 1 162270466 162270466 A T NOS1AP Missense_Mutation p.K105M 0.12 deleterious(0) probably_damaging(0.984) TCGA-D8-A1JK-01 1 167382300 167382300 G A POU2F1 Missense_Mutation p.G647S 0.34 tolerated(1) benign(0.166) TCGA-D8-A1JK-01 1 183486847 183486847 G A SMG7 Silent p.Q68Q 0.12 TCGA-D8-A1JK-01 1 203817471 203817473 AGA - ZC3H11A In_Frame_Del p.K521del 0.12 TCGA-D8-A1JK-01 1 204495552 204495553 CT - MDM4 Frame_Shift_Del p.T48Sfs*2 0.12 TCGA-D8-A1JK-01 1 205053330 205053330 C T TMEM81 Missense_Mutation p.G40E 0.17 tolerated(0.05) possibly_damaging(0.478) TCGA-D8-A1JK-01 1 205632405 205632405 C T SLC45A3 Missense_Mutation p.G172S 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1JK-01 1 206776493 206776494 - T EIF2D Frame_Shift_Ins p.S199Kfs*2 0.08 TCGA-D8-A1JK-01 1 223177547 223177547 T G DISP1 Silent p.A936A 0.10 TCGA-D8-A1JK-01 1 224420957 224420957 A C NVL Missense_Mutation p.S801A 0.15 tolerated(0.35) benign(0.096) TCGA-D8-A1JK-01 1 225488627 225488627 G A DNAH14 Silent p.L2096L 0.41 TCGA-D8-A1JK-01 1 227211038 227211038 A G CDC42BPA Missense_Mutation p.L1479S 0.10 deleterious(0) probably_damaging(0.982) TCGA-D8-A1JK-01 1 248084570 248084570 T C OR2T8 Missense_Mutation p.L84S 0.15 deleterious(0) probably_damaging(0.917) TCGA-D8-A1JK-01 1 26595997 26595997 C G CEP85 Missense_Mutation p.T514S 0.11 tolerated(0.88) benign(0.012) TCGA-D8-A1JK-01 1 29018202 29018202 T A GMEB1 Missense_Mutation p.I116K 0.10 deleterious(0.01) benign(0.004) TCGA-D8-A1JK-01 1 35851042 35851042 G A ZMYM4 Splice_Site p.X524_splice 0.11 TCGA-D8-A1JK-01 1 40704166 40704167 AG - RLF Frame_Shift_Del p.E1265Kfs*2 0.14 TCGA-D8-A1JK-01 1 47149000 47149000 G A EFCAB14 Silent p.I428I 0.10 TCGA-D8-A1JK-01 1 53668073 53668073 A T CPT2 Missense_Mutation p.K104N 0.13 tolerated(0.13) benign(0.042) TCGA-D8-A1JK-01 1 55175824 55175824 G A MROH7 Silent p.Q1312Q 0.50 TCGA-D8-A1JK-01 1 6169975 6169975 G A CHD5 Missense_Mutation p.H1820Y 0.18 deleterious(0.02) benign(0.154) TCGA-D8-A1JK-01 1 6194863 6194863 C - CHD5 Frame_Shift_Del p.G976Afs*11 0.40 TCGA-D8-A1JK-01 1 84701012 84701012 C T PRKACB 3'UTR 0.45 TCGA-D8-A1JK-01 1 90178422 90178422 G A LRRC8C Missense_Mutation p.G98D 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JK-01 1 98186358 98186358 T C DPYD Intron 0.15 TCGA-D8-A1JK-01 20 23065764 23065764 G A CD93 Nonsense_Mutation p.Q356* 0.33 TCGA-D8-A1JK-01 20 31022539 31022539 C T ASXL1 Missense_Mutation p.P675L 0.62 tolerated_low_confidence(0.16) benign(0.005) TCGA-D8-A1JK-01 20 33517366 33517366 A G GSS Missense_Mutation p.V380A 0.37 tolerated(0.74) benign(0.013) TCGA-D8-A1JK-01 20 52193275 52193275 G T ZNF217 Nonsense_Mutation p.Y676* 0.28 TCGA-D8-A1JK-01 20 52583447 52583447 T A BCAS1 Missense_Mutation p.M450L 0.10 tolerated(0.54) benign(0.007) TCGA-D8-A1JK-01 20 57290376 57290376 T C NPEPL1 Silent p.L522L 0.16 TCGA-D8-A1JK-01 21 15013685 15013687 AAG - POTED In_Frame_Del p.E520del 0.43 TCGA-D8-A1JK-01 21 19635193 19635193 C T CHODL Silent p.F240F 0.15 TCGA-D8-A1JK-01 21 28306826 28306826 G T ADAMTS5 Missense_Mutation p.Q550K 0.16 tolerated(0.59) benign(0.22) TCGA-D8-A1JK-01 21 33887394 33887394 C T EVA1C Missense_Mutation p.A407V 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-D8-A1JK-01 21 40665795 40665795 C A BRWD1 Missense_Mutation p.R258I 0.13 deleterious(0) probably_damaging(0.974) TCGA-D8-A1JK-01 22 37387573 37387573 T C TEX33 Missense_Mutation p.K232E 0.52 deleterious(0) possibly_damaging(0.486) TCGA-D8-A1JK-01 22 44067953 44067953 G C EFCAB6 Missense_Mutation p.R514G 0.12 deleterious(0.03) benign(0.226) TCGA-D8-A1JK-01 22 50678788 50678788 C A TUBGCP6 Silent p.P250P 0.07 TCGA-D8-A1JK-01 2 103274271 103274271 A G SLC9A2 Missense_Mutation p.N180D 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-D8-A1JK-01 2 120194626 120194626 G A TMEM37 Nonsense_Mutation p.W61* 0.10 TCGA-D8-A1JK-01 2 135988317 135988317 C T ZRANB3 Missense_Mutation p.E574K 0.28 deleterious(0.04) benign(0.02) TCGA-D8-A1JK-01 2 139316724 139316724 T C SPOPL Missense_Mutation p.F205L 0.13 tolerated(0.81) benign(0.002) TCGA-D8-A1JK-01 2 166451648 166451648 G C CSRNP3 Missense_Mutation p.D25H 0.13 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JK-01 2 170127501 170127501 C T LRP2 Missense_Mutation p.G745R 0.29 probably_damaging(1) TCGA-D8-A1JK-01 2 170366239 170366239 A C KLHL41 5'UTR 0.11 TCGA-D8-A1JK-01 2 178301748 178301748 G A AGPS Missense_Mutation p.M201I 0.09 tolerated(0.16) benign(0) TCGA-D8-A1JK-01 2 179456033 179456033 T C TTN Missense_Mutation p.N20140S 0.20 TCGA-D8-A1JK-01 2 209136299 209136299 G A PIKFYVE Missense_Mutation p.R19Q 0.12 tolerated(0.2) benign(0.005) TCGA-D8-A1JK-01 2 21231856 21231856 T C APOB Silent p.S2628S 0.45 TCGA-D8-A1JK-01 2 225698925 225698925 T G DOCK10 Missense_Mutation p.K969T 0.17 tolerated(0.16) benign(0.026) TCGA-D8-A1JK-01 2 233651995 233651995 C - GIGYF2 Frame_Shift_Del p.A245Vfs*56 0.29 TCGA-D8-A1JK-01 2 234079743 234079743 G A INPP5D Missense_Mutation p.R633H 0.16 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 2 242141634 242141634 C G ANO7 Missense_Mutation p.P267R 0.28 tolerated(0.27) benign(0.055) TCGA-D8-A1JK-01 2 26802290 26802290 T G C2orf70 Missense_Mutation p.F197C 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 2 47233105 47233105 G A TTC7A Silent p.E370E 0.12 TCGA-D8-A1JK-01 2 61361346 61361346 G T KIAA1841 Missense_Mutation p.L701F 0.21 unknown(0) TCGA-D8-A1JK-01 2 70164405 70164405 C A MXD1 Silent p.I119I 0.37 TCGA-D8-A1JK-01 2 71295825 71295825 C A NAGK Silent p.I50I 0.24 TCGA-D8-A1JK-01 2 80773099 80773099 T C CTNNA2 Missense_Mutation p.V484A 0.14 tolerated(0.82) benign(0.042) TCGA-D8-A1JK-01 2 85769254 85769254 C A MAT2A Intron 0.12 TCGA-D8-A1JK-01 2 97019092 97019092 C G NCAPH Missense_Mutation p.A320G 0.26 deleterious(0.01) possibly_damaging(0.85) TCGA-D8-A1JK-01 3 10091091 10091091 A G FANCD2 Missense_Mutation p.S483G 0.08 tolerated(0.08) benign(0.276) TCGA-D8-A1JK-01 3 101370304 101370304 G A ZBTB11 Silent p.N956N 0.17 TCGA-D8-A1JK-01 3 105266099 105266102 AAAG - ALCAM Frame_Shift_Del p.R405Sfs*3 0.32 TCGA-D8-A1JK-01 3 108159994 108159994 C T MYH15 Silent p.E943E 0.15 TCGA-D8-A1JK-01 3 113138991 113138991 T G WDR52 Missense_Mutation p.N148T 0.12 deleterious(0.01) benign(0.224) TCGA-D8-A1JK-01 3 115342472 115342472 G A GAP43 5'UTR 0.21 TCGA-D8-A1JK-01 3 124826747 124826747 T C SLC12A8 Missense_Mutation p.H428R 0.31 tolerated(0.28) benign(0.002) TCGA-D8-A1JK-01 3 126071324 126071324 G A KLF15 Silent p.L148L 0.43 TCGA-D8-A1JK-01 3 132245123 132245123 C A DNAJC13 Missense_Mutation p.Q2127K 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-D8-A1JK-01 3 140397328 140397328 T C TRIM42 Missense_Mutation p.L86P 0.31 tolerated(0.35) benign(0.11) TCGA-D8-A1JK-01 3 14708374 14708374 G C CCDC174 Missense_Mutation p.R215P 0.16 deleterious(0) possibly_damaging(0.613) TCGA-D8-A1JK-01 3 157815841 157815841 T C SHOX2 Missense_Mutation p.K348R 0.13 tolerated(0.1) unknown(0) TCGA-D8-A1JK-01 3 159995153 159995153 A C IFT80 Silent p.L680L 0.21 TCGA-D8-A1JK-01 3 164735432 164735432 A G SI Silent p.Y1221Y 0.14 TCGA-D8-A1JK-01 3 167086345 167086345 C T ZBBX Missense_Mutation p.R29Q 0.35 tolerated(0.47) benign(0.232) TCGA-D8-A1JK-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1JK-01 3 184714278 184714278 A T VPS8 Silent p.I1275I 0.31 TCGA-D8-A1JK-01 3 184801224 184801224 A T C3orf70 Missense_Mutation p.F108L 0.29 tolerated_low_confidence(0.89) benign(0.373) TCGA-D8-A1JK-01 3 184909962 184909962 T C EHHADH 3'UTR 0.10 TCGA-D8-A1JK-01 3 190362053 190362053 C A IL1RAP Nonsense_Mutation p.Y356* 0.29 TCGA-D8-A1JK-01 3 196675068 196675068 C T PIGZ Missense_Mutation p.A234T 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1JK-01 3 25637900 25637928 CTTTTGAAAAGGTGCAGAGCGTGTAATTA - RARB Splice_Site p.X384_splice 0.13 TCGA-D8-A1JK-01 3 42916128 42916128 G A CYP8B1 Missense_Mutation p.P394L 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 3 44373333 44373333 G A TOPAZ1 Missense_Mutation p.E1637K 0.17 tolerated(0.08) benign(0.094) TCGA-D8-A1JK-01 3 48637563 48637563 T C UQCRC1 Missense_Mutation p.D412G 0.23 deleterious(0) possibly_damaging(0.643) TCGA-D8-A1JK-01 3 49200560 49200560 C T CCDC71 Missense_Mutation p.R361K 0.13 tolerated_low_confidence(0.56) unknown(0) TCGA-D8-A1JK-01 4 123193324 123193324 G A KIAA1109 Missense_Mutation p.S2737N 0.10 benign(0.079) TCGA-D8-A1JK-01 4 126384757 126384757 A C FAT4 Missense_Mutation p.N3945T 0.34 benign(0) TCGA-D8-A1JK-01 4 147431152 147431152 A G SLC10A7 Missense_Mutation p.I78T 0.14 tolerated(0.22) benign(0.001) TCGA-D8-A1JK-01 4 169279232 169279232 T G DDX60L 3'UTR 0.20 TCGA-D8-A1JK-01 4 54930430 54930430 T G CHIC2 Missense_Mutation p.D13A 0.27 tolerated(0.23) benign(0.001) TCGA-D8-A1JK-01 4 56301571 56301571 A G CLOCK 3'UTR 0.17 TCGA-D8-A1JK-01 4 71462727 71462727 G T AMBN Missense_Mutation p.Q32H 0.18 tolerated(0.07) possibly_damaging(0.834) TCGA-D8-A1JK-01 4 71650590 71650590 A T RUFY3 Missense_Mutation p.L355F 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-D8-A1JK-01 4 71650591 71650591 C A RUFY3 Silent p.R356R 0.16 TCGA-D8-A1JK-01 4 83765469 83765469 C T SEC31A Intron 0.14 TCGA-D8-A1JK-01 5 112175102 112175102 T A APC Missense_Mutation p.F1271I 0.16 probably_damaging(0.999) TCGA-D8-A1JK-01 5 118484775 118484775 T C DMXL1 Missense_Mutation p.S1085P 0.11 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JK-01 5 151784140 151784140 G A NMUR2 Silent p.L179L 0.18 TCGA-D8-A1JK-01 5 154394120 154394120 C A KIF4B Missense_Mutation p.S234Y 0.18 deleterious(0) probably_damaging(0.936) TCGA-D8-A1JK-01 5 159996578 159996578 A T ATP10B Missense_Mutation p.V1288E 0.08 deleterious(0) possibly_damaging(0.775) TCGA-D8-A1JK-01 5 40854553 40854553 C A CARD6 3'UTR 0.20 TCGA-D8-A1JK-01 5 40972659 40972659 G C C7 Missense_Mutation p.W679C 0.38 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 5 68616155 68616155 T C CCDC125 Silent p.E71E 0.36 TCGA-D8-A1JK-01 5 78938656 78938657 - T PAPD4 Frame_Shift_Ins p.Q228Sfs*7 0.17 TCGA-D8-A1JK-01 6 101075523 101075523 A T ASCC3 Missense_Mutation p.F1529I 0.13 deleterious(0) possibly_damaging(0.689) TCGA-D8-A1JK-01 6 101075570 101075570 A C ASCC3 Missense_Mutation p.F1513C 0.13 deleterious(0) probably_damaging(0.98) TCGA-D8-A1JK-01 6 150267703 150267703 T C ULBP2 Missense_Mutation p.F182S 0.14 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JK-01 6 153292424 153292438 ACAATAATCAAATCC - FBXO5 In_Frame_Del p.G402_C406del 0.13 TCGA-D8-A1JK-01 6 159103965 159103965 A G SYTL3 Missense_Mutation p.K113R 0.22 tolerated(0.16) benign(0.049) TCGA-D8-A1JK-01 6 159660774 159660774 C T FNDC1 Missense_Mutation p.T1469I 0.18 tolerated_low_confidence(0.12) unknown(0) TCGA-D8-A1JK-01 6 2769106 2769106 A C WRNIP1 Missense_Mutation p.K335T 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 6 33654276 33654276 G C ITPR3 Missense_Mutation p.D1987H 0.18 deleterious(0) possibly_damaging(0.738) TCGA-D8-A1JK-01 6 41877006 41877006 C A MED20 Splice_Site p.X141_splice 0.26 TCGA-D8-A1JK-01 6 47686162 47686162 T C GPR115 Missense_Mutation p.M691T 0.18 deleterious_low_confidence(0) benign(0.152) TCGA-D8-A1JK-01 6 54254741 54254741 A G TINAG 3'UTR 0.08 TCGA-D8-A1JK-01 6 56471604 56471604 T G DST Intron 0.21 TCGA-D8-A1JK-01 6 66115227 66115228 AC - EYS Frame_Shift_Del p.V299Ffs*13 0.16 TCGA-D8-A1JK-01 6 96999374 96999374 C G UFL1 Missense_Mutation p.N628K 0.15 tolerated(0.64) benign(0.06) TCGA-D8-A1JK-01 7 12410085 12410085 G - VWDE Frame_Shift_Del p.S616Yfs*46 0.35 TCGA-D8-A1JK-01 7 12412858 12412858 G C VWDE Missense_Mutation p.F444L 0.09 deleterious(0.02) possibly_damaging(0.846) TCGA-D8-A1JK-01 7 132192921 132192921 T C PLXNA4 Missense_Mutation p.N178D 0.10 tolerated(0.46) benign(0.01) TCGA-D8-A1JK-01 7 140373340 140373340 C T ADCK2 Silent p.V70V 0.50 TCGA-D8-A1JK-01 7 143054397 143054397 A T FAM131B Missense_Mutation p.Y196N 0.25 tolerated(0.42) probably_damaging(0.999) TCGA-D8-A1JK-01 7 143054428 143054428 C A FAM131B Missense_Mutation p.Q185H 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-D8-A1JK-01 7 143054478 143054478 T A FAM131B Missense_Mutation p.M169L 0.22 tolerated(1) benign(0.161) TCGA-D8-A1JK-01 7 158473410 158473410 T C NCAPG2 Intron 0.43 TCGA-D8-A1JK-01 7 5535475 5535475 G C FBXL18 Intron 0.29 TCGA-D8-A1JK-01 7 55912240 55912240 C T SEPT14 Missense_Mutation p.G116D 0.30 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JK-01 7 88964933 88964933 C A ZNF804B Missense_Mutation p.H879Q 0.10 tolerated(0.11) possibly_damaging(0.595) TCGA-D8-A1JK-01 7 92730562 92730562 G T SAMD9 3'UTR 0.12 TCGA-D8-A1JK-01 8 124413033 124413033 T A ATAD2 5'Flank 0.16 TCGA-D8-A1JK-01 8 140715163 140715163 C A KCNK9 Missense_Mutation p.V25L 0.53 deleterious(0.01) probably_damaging(0.971) TCGA-D8-A1JK-01 8 144898606 144898606 G A PUF60 3'UTR 0.17 TCGA-D8-A1JK-01 8 3265702 3265702 G T CSMD1 Nonsense_Mutation p.S597* 0.29 TCGA-D8-A1JK-01 8 38961171 38961171 T A ADAM9 Silent p.I804I 0.60 TCGA-D8-A1JK-01 8 39618783 39618783 A C ADAM2 Missense_Mutation p.S509A 0.10 tolerated(0.76) benign(0.003) TCGA-D8-A1JK-01 8 41845006 41845006 C T KAT6A Missense_Mutation p.E226K 0.09 probably_damaging(0.967) TCGA-D8-A1JK-01 8 48855813 48855813 A C PRKDC Missense_Mutation p.L308V 0.05 benign(0.03) TCGA-D8-A1JK-01 8 53548623 53548623 A G RB1CC1 Silent p.N1448N 0.36 TCGA-D8-A1JK-01 8 66525619 66525620 TG - ARMC1 Frame_Shift_Del p.I109Sfs*10 0.37 TCGA-D8-A1JK-01 8 70498728 70498728 A G SULF1 Silent p.G183G 0.10 TCGA-D8-A1JK-01 8 77761899 77761899 C T ZFHX4 Missense_Mutation p.T1266M 0.48 possibly_damaging(0.897) TCGA-D8-A1JK-01 8 77775820 77775820 C T ZFHX4 Silent p.V3290V 0.09 TCGA-D8-A1JK-01 8 82752096 82752096 G A SNX16 Silent p.G42G 0.10 TCGA-D8-A1JK-01 8 94935090 94935090 C A PDP1 Missense_Mutation p.A293E 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1JK-01 8 94935092 94935092 T A PDP1 Missense_Mutation p.F294I 0.10 deleterious(0.04) possibly_damaging(0.871) TCGA-D8-A1JK-01 8 95406066 95406066 C G RAD54B Missense_Mutation p.D475H 0.09 deleterious(0) probably_damaging(0.964) TCGA-D8-A1JK-01 9 112018071 112018071 C T EPB41L4B Missense_Mutation p.V328I 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-D8-A1JK-01 9 116812343 116812343 G C ZNF618 Missense_Mutation p.G828R 0.54 deleterious(0.02) benign(0.05) TCGA-D8-A1JK-01 9 117836049 117836049 C T TNC Missense_Mutation p.R1016H 0.14 deleterious(0) probably_damaging(0.934) TCGA-D8-A1JK-01 9 123731362 123731362 G A C5 Silent p.Y1399Y 0.16 TCGA-D8-A1JK-01 9 13222406 13222406 G A MPDZ Silent p.I191I 0.12 TCGA-D8-A1JK-01 9 134350103 134350103 G A PRRC2B Missense_Mutation p.E863K 0.25 tolerated(0.2) benign(0.22) TCGA-D8-A1JK-01 9 136031465 136031465 G T GBGT1 Intron 0.12 TCGA-D8-A1JK-01 9 3225066 3225066 T C RFX3 Silent p.T742T 0.16 TCGA-D8-A1JK-01 9 66458175 66458175 C T RNA5SP283 RNA 0.30 TCGA-D8-A1JK-01 9 6986428 6986428 T A KDM4C Missense_Mutation p.I480K 0.60 tolerated(0.95) benign(0) TCGA-D8-A1JK-01 9 84562944 84562944 G A RP11-383M4.6 Intron 0.16 TCGA-D8-A1JK-01 9 88272558 88272558 T G AGTPBP1 Missense_Mutation p.K234T 0.13 deleterious(0) probably_damaging(0.913) TCGA-D8-A1JK-01 X 150789492 150789492 C A PASD1 Missense_Mutation p.L100I 0.16 tolerated(0.35) benign(0.365) TCGA-D8-A1JK-01 X 151821057 151821057 G A GABRQ Silent p.A404A 0.14 TCGA-D8-A1JK-01 X 153760236 153760236 C T G6PD Nonsense_Mutation p.W539* 0.52 TCGA-D8-A1JK-01 X 17750232 17750232 C T NHS Missense_Mutation p.S1514F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JK-01 X 47500826 47500826 C T ELK1 Silent p.V5V 0.12 TCGA-D8-A1JK-01 X 47837015 47837015 G A ZNF182 Silent p.P157P 0.21 TCGA-D8-A1JK-01 X 48780995 48780995 G A OTUD5 Silent p.A503A 0.17 TCGA-D8-A1JK-01 X 49861282 49861283 - T CLCN5 3'UTR 0.14 TCGA-D8-A1JL-01 10 11317019 11317019 G A CELF2 Splice_Site p.X260_splice 0.36 TCGA-D8-A1JL-01 10 116233707 116233707 C T ABLIM1 Silent p.R350R 0.15 TCGA-D8-A1JL-01 10 5042582 5042582 T C AKR1C2 Intron 0.13 TCGA-D8-A1JL-01 10 62551936 62551936 G C CDK1 Missense_Mutation p.W228C 0.09 deleterious(0.01) probably_damaging(1) TCGA-D8-A1JL-01 10 76735881 76735881 C G KAT6B Missense_Mutation p.R596G 0.09 benign(0.349) TCGA-D8-A1JL-01 10 85970822 85970822 C G CDHR1 Silent p.L462L 0.30 TCGA-D8-A1JL-01 10 88784395 88784395 C T FAM25A Silent p.T78T 0.41 TCGA-D8-A1JL-01 10 95353681 95353681 G A RBP4 Missense_Mutation p.S156F 0.17 deleterious(0) probably_damaging(0.963) TCGA-D8-A1JL-01 11 111385611 111385611 C G C11orf88 Silent p.A34A 0.12 TCGA-D8-A1JL-01 11 118926221 118926221 T C HYOU1 Missense_Mutation p.D83G 0.28 deleterious(0.01) probably_damaging(0.955) TCGA-D8-A1JL-01 11 123813968 123813968 T C OR6T1 Missense_Mutation p.H193R 0.18 tolerated(0.55) benign(0.004) TCGA-D8-A1JL-01 11 123894114 123894114 C A OR10G9 Missense_Mutation p.T132N 0.53 tolerated(0.16) benign(0.13) TCGA-D8-A1JL-01 11 64332700 64332700 A C SLC22A11 Missense_Mutation p.M317L 0.12 tolerated(1) benign(0.002) TCGA-D8-A1JL-01 11 65620233 65620233 G A SNX32 Missense_Mutation p.E349K 0.21 tolerated(0.08) benign(0.082) TCGA-D8-A1JL-01 11 94278568 94278568 C A FUT4 Silent p.T423T 0.45 TCGA-D8-A1JL-01 12 100796149 100796149 G A SLC17A8 Nonsense_Mutation p.W265* 0.20 TCGA-D8-A1JL-01 12 118615098 118615098 G T TAOK3 Missense_Mutation p.Q535K 0.20 tolerated(0.72) benign(0.036) TCGA-D8-A1JL-01 12 123107016 123107016 G C KNTC1 Missense_Mutation p.S2126T 0.13 tolerated(0.12) benign(0.149) TCGA-D8-A1JL-01 12 124402297 124402301 GAACA - DNAH10 Frame_Shift_Del p.N3606Afs*57 0.14 TCGA-D8-A1JL-01 12 130941040 130941040 C G RIMBP2 Splice_Site p.X103_splice 0.60 TCGA-D8-A1JL-01 12 14613597 14613598 TC - ATF7IP Frame_Shift_Del p.S777Ffs*31 0.10 TCGA-D8-A1JL-01 12 44191587 44191587 A G TWF1 Missense_Mutation p.V185A 0.21 deleterious(0) benign(0.123) TCGA-D8-A1JL-01 12 4721739 4721739 C A DYRK4 Missense_Mutation p.D392E 0.24 tolerated(0.31) benign(0.12) TCGA-D8-A1JL-01 12 98992341 98992341 C T SLC25A3 Silent p.A168A 0.07 TCGA-D8-A1JL-01 13 113742701 113742701 C G MCF2L Missense_Mutation p.Q917E 0.18 deleterious(0) probably_damaging(0.98) TCGA-D8-A1JL-01 13 35770032 35770032 A T NBEA Missense_Mutation p.K1653N 0.44 tolerated_low_confidence(0.11) benign(0.035) TCGA-D8-A1JL-01 14 20249331 20249331 C T OR4M1 Missense_Mutation p.L284F 0.06 deleterious(0.01) benign(0.318) TCGA-D8-A1JL-01 14 21511331 21511331 G A RNASE7 Silent p.K60K 0.47 TCGA-D8-A1JL-01 14 76446997 76446997 C A TGFB3 Silent p.L80L 0.20 TCGA-D8-A1JL-01 14 77274333 77274333 G C ANGEL1 Missense_Mutation p.P270A 0.28 tolerated(0.08) probably_damaging(0.973) TCGA-D8-A1JL-01 14 94088952 94088952 C A UNC79 Silent p.P1614P 0.21 TCGA-D8-A1JL-01 14 99640525 99640525 G T BCL11B Missense_Mutation p.T883N 0.15 tolerated(0.43) probably_damaging(0.995) TCGA-D8-A1JL-01 15 40308734 40308734 A C EIF2AK4 Missense_Mutation p.K1264T 0.14 deleterious(0.01) possibly_damaging(0.877) TCGA-D8-A1JL-01 15 63419596 63419596 T G LACTB Missense_Mutation p.I220M 0.10 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JL-01 15 84651456 84651456 T C ADAMTSL3 Silent p.L1026L 0.16 TCGA-D8-A1JL-01 15 93540500 93540500 G A CHD2 Missense_Mutation p.R1251H 0.14 tolerated(0.74) benign(0.019) TCGA-D8-A1JL-01 16 20970646 20970646 T C DNAH3 Missense_Mutation p.I3561V 0.24 tolerated(0.09) benign(0.079) TCGA-D8-A1JL-01 16 88932941 88932941 G T PABPN1L Missense_Mutation p.P25H 0.40 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JL-01 17 10300124 10300124 T C MYH8 Missense_Mutation p.D1453G 0.17 deleterious(0.02) probably_damaging(1) TCGA-D8-A1JL-01 17 11166794 11166794 G T SHISA6 Silent p.S250S 0.34 TCGA-D8-A1JL-01 17 26574486 26574486 G A CTD-2008P7.8 RNA 0.24 TCGA-D8-A1JL-01 17 26818766 26818766 C A SLC13A2 Silent p.G307G 0.24 TCGA-D8-A1JL-01 17 38256376 38256376 A G NR1D1 5'UTR 0.43 TCGA-D8-A1JL-01 17 39034526 39034526 G T KRT20 Missense_Mutation p.A337D 0.23 tolerated(0.14) benign(0.022) TCGA-D8-A1JL-01 17 72725505 72725505 G A RAB37 Silent p.T61T 0.15 TCGA-D8-A1JL-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1JL-01 18 63476962 63476962 G C CDH7 Missense_Mutation p.G78A 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JL-01 19 20117638 20117638 C A ZNF682 Nonsense_Mutation p.G225* 0.18 TCGA-D8-A1JL-01 19 20135099 20135099 C T ZNF682 Silent p.R30R 0.10 TCGA-D8-A1JL-01 19 8953820 8953820 A C MBD3L1 Missense_Mutation p.K156Q 0.33 tolerated(0.1) possibly_damaging(0.617) TCGA-D8-A1JL-01 1 101190442 101190442 T A VCAM1 Silent p.V308V 0.36 TCGA-D8-A1JL-01 1 113057692 113057692 G A WNT2B Missense_Mutation p.V127I 0.24 deleterious(0.01) possibly_damaging(0.833) TCGA-D8-A1JL-01 1 113232573 113232573 G A MOV10 Missense_Mutation p.G230D 0.21 tolerated(0.33) benign(0.031) TCGA-D8-A1JL-01 1 117654825 117654825 G A TRIM45 3'UTR 0.29 TCGA-D8-A1JL-01 1 152279767 152279767 G A FLG Missense_Mutation p.S2532L 0.54 benign(0.388) TCGA-D8-A1JL-01 1 15687065 15687065 A C FHAD1 Missense_Mutation p.E156A 0.22 deleterious(0) possibly_damaging(0.65) TCGA-D8-A1JL-01 1 161166165 161166165 C - ADAMTS4 Intron 0.34 TCGA-D8-A1JL-01 1 19494604 19494604 A C UBR4 Silent p.T1272T 0.42 TCGA-D8-A1JL-01 1 19630661 19630661 G C AKR7A2 3'UTR 0.23 TCGA-D8-A1JL-01 1 196643014 196643014 C A CFH Missense_Mutation p.T91N 0.20 deleterious(0) probably_damaging(0.989) TCGA-D8-A1JL-01 1 19992561 19992561 C T HTR6 Silent p.F105F 0.30 TCGA-D8-A1JL-01 1 201868906 201868906 A G LMOD1 Missense_Mutation p.L412P 0.27 benign(0.224) TCGA-D8-A1JL-01 1 207697077 207697077 G A CR1 Silent p.K203K 0.19 TCGA-D8-A1JL-01 1 226579990 226579990 G T PARP1 Missense_Mutation p.S104R 0.34 tolerated(0.21) benign(0.025) TCGA-D8-A1JL-01 1 229771028 229771028 G A URB2 Missense_Mutation p.G223D 0.51 tolerated(0.25) benign(0.012) TCGA-D8-A1JL-01 1 43828729 43828729 C G CDC20 Missense_Mutation p.P477A 0.17 deleterious(0.04) probably_damaging(1) TCGA-D8-A1JL-01 1 47154023 47154023 A C EFCAB14 Splice_Site p.X329_splice 0.37 TCGA-D8-A1JL-01 1 70225882 70225882 C T LRRC7 5'UTR 0.19 TCGA-D8-A1JL-01 1 75037347 75037347 C A C1orf173 Silent p.T1349T 0.32 TCGA-D8-A1JL-01 1 91383613 91383613 A T ZNF644 Missense_Mutation p.C1263S 0.20 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JL-01 20 48252686 48252686 G C B4GALT5 3'UTR 0.20 TCGA-D8-A1JL-01 20 62871224 62871224 C A MYT1 Missense_Mutation p.Q1069K 0.62 benign(0.265) TCGA-D8-A1JL-01 21 19666941 19666941 G T TMPRSS15 Silent p.R764R 0.36 TCGA-D8-A1JL-01 22 21134011 21134011 C T SERPIND1 Silent p.L137L 0.18 TCGA-D8-A1JL-01 22 45960939 45960939 C T FBLN1 Intron 0.32 TCGA-D8-A1JL-01 2 144314050 144314050 C A ARHGAP15 Missense_Mutation p.N333K 0.17 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JL-01 2 160205766 160205766 C T BAZ2B Missense_Mutation p.G1630E 0.13 possibly_damaging(0.776) TCGA-D8-A1JL-01 2 166245597 166245597 A T SCN2A Missense_Mutation p.I1761F 0.44 deleterious(0) possibly_damaging(0.8) TCGA-D8-A1JL-01 2 170751798 170751798 A G UBR3 Missense_Mutation p.M405V 0.55 deleterious(0.01) possibly_damaging(0.867) TCGA-D8-A1JL-01 2 17696790 17696790 T C RAD51AP2 Missense_Mutation p.K965E 0.23 deleterious(0) possibly_damaging(0.74) TCGA-D8-A1JL-01 2 196723282 196723282 G A DNAH7 Silent p.I2661I 0.36 TCGA-D8-A1JL-01 2 197081766 197081766 C A HECW2 Missense_Mutation p.R1487I 0.40 deleterious(0.01) possibly_damaging(0.754) TCGA-D8-A1JL-01 2 198949886 198949886 G C PLCL1 Missense_Mutation p.D549H 0.12 tolerated(0.06) benign(0.015) TCGA-D8-A1JL-01 2 210565003 210565003 G A MAP2 Missense_Mutation p.A1509T 0.22 tolerated(0.26) benign(0.005) TCGA-D8-A1JL-01 2 27163016 27163016 G C DPYSL5 Missense_Mutation p.M355I 0.09 deleterious(0.01) probably_damaging(0.97) TCGA-D8-A1JL-01 2 32743984 32743984 C T BIRC6 Missense_Mutation p.T3865I 0.16 benign(0.367) TCGA-D8-A1JL-01 2 86718115 86718115 C G KDM3A Missense_Mutation p.Q1229E 0.10 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JL-01 3 132948149 132948149 T G TMEM108 5'UTR 0.26 TCGA-D8-A1JL-01 3 188584023 188584023 C G LPP Silent p.P482P 0.13 TCGA-D8-A1JL-01 3 191093233 191093233 C T CCDC50 Silent p.P277P 0.12 TCGA-D8-A1JL-01 3 31665175 31665175 G A STT3B Missense_Mutation p.V517M 0.19 tolerated(0.1) benign(0.091) TCGA-D8-A1JL-01 3 46450435 46450435 G A CCRL2 Missense_Mutation p.A301T 0.37 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JL-01 4 104061038 104061038 C G CENPE Missense_Mutation p.A2038P 0.23 possibly_damaging(0.828) TCGA-D8-A1JL-01 4 186598448 186598476 GGTAGAAATCCTCCGAGTTTGAGAATCTT - SORBS2 Intron 0.27 TCGA-D8-A1JL-01 4 85538784 85538784 A T CDS1 Missense_Mutation p.Y137F 0.26 deleterious(0) probably_damaging(0.982) TCGA-D8-A1JL-01 4 86844830 86844830 C T ARHGAP24 Missense_Mutation p.H100Y 0.29 deleterious(0.04) benign(0.232) TCGA-D8-A1JL-01 5 13735385 13735385 G A DNAH5 Silent p.I3872I 0.13 TCGA-D8-A1JL-01 5 140431880 140431880 A T PCDHB1 Missense_Mutation p.K275N 0.30 deleterious(0) possibly_damaging(0.759) TCGA-D8-A1JL-01 5 55237584 55237584 C A IL6ST Nonsense_Mutation p.E695* 0.24 TCGA-D8-A1JL-01 6 10557574 10557574 A T GCNT2 Intron 0.11 TCGA-D8-A1JL-01 6 134350198 134350198 G A SLC2A12 Silent p.S255S 0.14 TCGA-D8-A1JL-01 6 169053662 169053662 C G SMOC2 Missense_Mutation p.L358V 0.19 deleterious(0) probably_damaging(0.99) TCGA-D8-A1JL-01 6 31239446 31239446 G A HLA-C Silent p.Y91Y 0.18 TCGA-D8-A1JL-01 6 57499009 57499009 C G PRIM2 3'UTR 0.04 TCGA-D8-A1JL-01 7 103138567 103138567 C A RELN Missense_Mutation p.V2934L 0.09 tolerated(0.67) probably_damaging(0.989) TCGA-D8-A1JL-01 7 116955248 116955248 A G WNT2 Silent p.G155G 0.27 TCGA-D8-A1JL-01 7 119915360 119915360 A G KCND2 Missense_Mutation p.Y225C 0.27 tolerated(0.05) probably_damaging(0.987) TCGA-D8-A1JL-01 7 120740066 120740066 C T CPED1 Missense_Mutation p.T279M 0.17 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JL-01 7 120935519 120935519 A T CPED1 Missense_Mutation p.E965V 0.18 tolerated(0.07) possibly_damaging(0.502) TCGA-D8-A1JL-01 7 126079180 126079180 G C GRM8 Nonsense_Mutation p.S907* 0.16 TCGA-D8-A1JL-01 7 139798766 139798766 T C KDM7A Missense_Mutation p.R611G 0.13 tolerated(0.13) benign(0.001) TCGA-D8-A1JL-01 7 140110775 140110775 C A RAB19 Intron 0.12 TCGA-D8-A1JL-01 7 142479919 142479919 C T PRSS3P2 RNA 0.06 TCGA-D8-A1JL-01 7 143884086 143884086 G T ARHGEF35 Missense_Mutation p.S464Y 0.31 deleterious(0) possibly_damaging(0.585) TCGA-D8-A1JL-01 7 154753359 154753359 C G PAXIP1 Splice_Site p.X710_splice 0.27 TCGA-D8-A1JL-01 7 157000221 157000221 T C UBE3C Silent p.D516D 0.11 TCGA-D8-A1JL-01 7 158534332 158534332 T A ESYT2 Missense_Mutation p.S711C 0.10 tolerated(0.07) possibly_damaging(0.881) TCGA-D8-A1JL-01 7 27238809 27238809 C G HOXA13 Silent p.A296A 0.21 TCGA-D8-A1JL-01 7 29135737 29135737 C A CPVL Missense_Mutation p.V129F 0.20 deleterious(0.04) possibly_damaging(0.876) TCGA-D8-A1JL-01 7 43659243 43659243 G C STK17A Missense_Mutation p.K204N 0.06 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JL-01 8 22106154 22106154 C G POLR3D Missense_Mutation p.A216G 0.17 tolerated(0.31) benign(0) TCGA-D8-A1JL-01 8 22862905 22862905 C T RHOBTB2 Silent p.D93D 0.20 TCGA-D8-A1JL-01 8 3224613 3224613 T C CSMD1 Missense_Mutation p.Q1019R 0.20 probably_damaging(0.995) TCGA-D8-A1JL-01 8 68123739 68123739 T C ARFGEF1 Missense_Mutation p.S1600G 0.10 tolerated(0.4) benign(0) TCGA-D8-A1JL-01 9 111812873 111812873 G T TMEM245 Missense_Mutation p.L652I 0.17 tolerated(0.4) benign(0.111) TCGA-D8-A1JL-01 9 37521593 37521593 C G FBXO10 Missense_Mutation p.E725Q 0.59 deleterious(0.01) probably_damaging(0.97) TCGA-D8-A1JL-01 9 37948743 37948743 T G SHB Missense_Mutation p.H412P 0.28 deleterious(0) probably_damaging(0.948) TCGA-D8-A1JL-01 9 86514613 86514613 A G KIF27 Missense_Mutation p.V522A 0.12 tolerated(1) benign(0.002) TCGA-D8-A1JL-01 X 148568556 148568556 T G IDS Silent p.I149I 0.28 TCGA-D8-A1JL-01 X 76875962 76875962 T A ATRX Nonsense_Mutation p.K1725* 0.10 TCGA-D8-A1JL-01 X 78427212 78427212 A G GPR174 Silent p.A236A 0.20 TCGA-D8-A1JM-01 10 121677389 121677389 G A SEC23IP Missense_Mutation p.R529H 0.14 deleterious(0) probably_damaging(0.968) TCGA-D8-A1JM-01 10 134886381 134886381 C T GPR123 Missense_Mutation p.R139C 0.36 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-D8-A1JM-01 10 94679793 94679793 A G EXOC6 Missense_Mutation p.I292V 0.37 deleterious(0.03) benign(0.107) TCGA-D8-A1JM-01 12 52682214 52682215 - T KRT81 Frame_Shift_Ins p.S223Vfs*22 0.38 TCGA-D8-A1JM-01 12 55420713 55420713 C T NEUROD4 Nonsense_Mutation p.Q164* 0.40 TCGA-D8-A1JM-01 12 7894054 7894054 T A CLEC4C Silent p.P66P 0.14 TCGA-D8-A1JM-01 14 52781955 52781955 G T PTGER2 Missense_Mutation p.R230L 0.16 deleterious(0.01) benign(0.44) TCGA-D8-A1JM-01 15 55669244 55669244 A C CCPG1 Missense_Mutation p.N119K 0.08 tolerated(0.59) benign(0.06) TCGA-D8-A1JM-01 16 24921651 24921651 C T SLC5A11 Missense_Mutation p.R559C 0.33 deleterious(0.01) possibly_damaging(0.847) TCGA-D8-A1JM-01 16 28506485 28506485 G A APOBR Silent p.A41A 0.27 TCGA-D8-A1JM-01 17 10419585 10419585 C A MYH1 Missense_Mutation p.M93I 0.39 deleterious(0.01) benign(0.003) TCGA-D8-A1JM-01 17 40714971 40714971 C A COASY Missense_Mutation p.P140T 0.80 tolerated(0.18) probably_damaging(0.999) TCGA-D8-A1JM-01 17 40847798 40847798 C G CNTNAP1 Silent p.V1084V 0.64 TCGA-D8-A1JM-01 17 40847799 40847799 T G CNTNAP1 Missense_Mutation p.S1085A 0.64 tolerated(1) benign(0.011) TCGA-D8-A1JM-01 17 51900535 51900535 G A KIF2B Silent p.T47T 0.75 TCGA-D8-A1JM-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.65 tolerated(0.13) possibly_damaging(0.631) TCGA-D8-A1JM-01 19 1218492 1218492 C T STK11 Nonsense_Mutation p.Q123* 0.76 TCGA-D8-A1JM-01 19 19735340 19735340 G A LPAR2 Silent p.L261L 0.44 TCGA-D8-A1JM-01 19 6418847 6418847 G A KHSRP Missense_Mutation p.R216C 0.13 deleterious(0) possibly_damaging(0.543) TCGA-D8-A1JM-01 19 7688749 7688749 C G XAB2 Silent p.L329L 0.38 TCGA-D8-A1JM-01 1 155630341 155630341 T C YY1AP1 Missense_Mutation p.I592V 0.27 tolerated_low_confidence(0.09) benign(0.426) TCGA-D8-A1JM-01 1 156812974 156812974 C T INSRR Missense_Mutation p.R983Q 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-D8-A1JM-01 1 158736247 158736247 C A OR6N1 Missense_Mutation p.A76S 0.28 tolerated(0.83) benign(0.066) TCGA-D8-A1JM-01 1 171178166 171178166 A G FMO2 3'UTR 0.28 TCGA-D8-A1JM-01 1 175355251 175355251 C T TNR Missense_Mutation p.R565Q 0.11 deleterious(0.01) possibly_damaging(0.879) TCGA-D8-A1JM-01 1 248756685 248756685 G T OR2T10 Missense_Mutation p.P129T 0.22 deleterious(0) probably_damaging(0.991) TCGA-D8-A1JM-01 1 32796496 32796496 G T HDAC1 Silent p.T322T 0.30 TCGA-D8-A1JM-01 1 45475092 45475092 T C HECTD3 Missense_Mutation p.Y313C 0.46 deleterious(0.03) possibly_damaging(0.905) TCGA-D8-A1JM-01 20 36572460 36572460 C T VSTM2L Silent p.Y140Y 0.43 TCGA-D8-A1JM-01 20 37177429 37177429 A T RALGAPB Silent p.A1000A 0.40 TCGA-D8-A1JM-01 20 60886769 60886769 G T LAMA5 Missense_Mutation p.P3236Q 0.50 probably_damaging(0.983) TCGA-D8-A1JM-01 20 62863610 62863612 GCA - MYT1 In_Frame_Del p.Q924del 0.81 TCGA-D8-A1JM-01 21 17242407 17242407 G A USP25 Silent p.R872R 0.32 TCGA-D8-A1JM-01 22 16256527 16256527 C A POTEH 3'UTR 0.13 TCGA-D8-A1JM-01 22 25131779 25131779 C A PIWIL3 Missense_Mutation p.W510C 0.66 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JM-01 2 113940821 113940821 G C PSD4 Missense_Mutation p.G263A 0.08 tolerated_low_confidence(0.28) benign(0.02) TCGA-D8-A1JM-01 2 228163516 228163516 A G COL4A3 Silent p.P1290P 0.36 TCGA-D8-A1JM-01 2 68962324 68962324 G A ARHGAP25 5'UTR 0.40 TCGA-D8-A1JM-01 3 173322406 173322406 C A NLGN1 Nonsense_Mutation p.C6* 0.63 TCGA-D8-A1JM-01 3 47045665 47045665 G A NBEAL2 Missense_Mutation p.D1994N 0.66 deleterious(0) probably_damaging(0.929) TCGA-D8-A1JM-01 3 50379059 50379059 C G ZMYND10 Missense_Mutation p.S398T 0.70 deleterious(0) benign(0.016) TCGA-D8-A1JM-01 5 122881422 122881422 C A CSNK1G3 Nonsense_Mutation p.S22* 0.35 TCGA-D8-A1JM-01 6 123892166 123892166 C T TRDN Missense_Mutation p.S45N 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-D8-A1JM-01 6 168462600 168462600 G A FRMD1 Missense_Mutation p.T311M 0.41 deleterious(0) probably_damaging(0.993) TCGA-D8-A1JM-01 6 168709386 168709386 C T DACT2 Missense_Mutation p.E351K 0.35 tolerated(0.89) benign(0.027) TCGA-D8-A1JM-01 6 170070709 170070709 C A WDR27 Missense_Mutation p.V138F 0.42 deleterious(0) possibly_damaging(0.798) TCGA-D8-A1JM-01 7 132193405 132193405 G T PLXNA4 Silent p.L16L 0.39 TCGA-D8-A1JM-01 7 139094326 139094326 G C LUC7L2 Missense_Mutation p.K301N 0.44 deleterious(0.02) probably_damaging(0.987) TCGA-D8-A1JM-01 7 150697610 150697610 G T NOS3 Missense_Mutation p.D386Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JM-01 8 61777880 61777880 T A CHD7 Silent p.A2794A 0.49 TCGA-D8-A1JM-01 8 82670443 82670443 C T CHMP4C Missense_Mutation p.R184C 0.27 deleterious(0.03) possibly_damaging(0.849) TCGA-D8-A1JM-01 9 18892387 18892387 G T ADAMTSL1 Silent p.R1548R 0.19 TCGA-D8-A1JM-01 9 33364082 33364082 G T NFX1 Missense_Mutation p.S983I 0.77 deleterious(0) possibly_damaging(0.602) TCGA-D8-A1JM-01 X 149999738 149999738 C T CD99L2 Silent p.L32L 0.36 TCGA-D8-A1JM-01 X 64721696 64721696 G A ZC3H12B Missense_Mutation p.C373Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JN-01 10 104120776 104120776 C T GBF1 Intron 0.42 TCGA-D8-A1JN-01 10 126523424 126523424 G A FAM175B Missense_Mutation p.E378K 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D8-A1JN-01 10 64573125 64573125 C T EGR2 Missense_Mutation p.E425K 0.37 deleterious(0.01) possibly_damaging(0.636) TCGA-D8-A1JN-01 10 8115717 8115718 - CTATG GATA3 Frame_Shift_Ins p.K358Lfs*2 0.49 TCGA-D8-A1JN-01 10 96106314 96106314 C A NOC3L Splice_Site p.X420_splice 0.37 TCGA-D8-A1JN-01 11 102220447 102220447 G A BIRC2 5'UTR 0.56 TCGA-D8-A1JN-01 11 1101059 1101059 C T MUC2 Silent p.I2486I 0.41 TCGA-D8-A1JN-01 11 113563803 113563803 G C TMPRSS5 Silent p.L318L 0.28 TCGA-D8-A1JN-01 11 125703244 125703244 A G PATE4 5'UTR 0.49 TCGA-D8-A1JN-01 11 129993538 129993538 C T APLP2 Silent p.P318P 0.48 TCGA-D8-A1JN-01 11 57263539 57263539 G A SLC43A1 Silent p.I219I 0.53 TCGA-D8-A1JN-01 11 58207576 58207576 C T OR5B12 Missense_Mutation p.D17N 0.46 tolerated_low_confidence(0.46) benign(0.01) TCGA-D8-A1JN-01 11 58980260 58980260 C A MPEG1 Missense_Mutation p.D27Y 0.40 tolerated(0.06) benign(0.007) TCGA-D8-A1JN-01 11 59559682 59559682 G A STX3 Missense_Mutation p.E154K 0.50 deleterious(0.03) probably_damaging(0.995) TCGA-D8-A1JN-01 11 61897585 61897585 C T INCENP Silent p.L196L 0.46 TCGA-D8-A1JN-01 11 61897900 61897900 C G INCENP Missense_Mutation p.Q301E 0.50 deleterious(0.02) unknown(0) TCGA-D8-A1JN-01 11 62398569 62398569 G C GANAB Missense_Mutation p.I383M 0.34 deleterious(0) probably_damaging(0.981) TCGA-D8-A1JN-01 11 62996883 62996883 G C SLC22A25 Nonsense_Mutation p.S81* 0.47 TCGA-D8-A1JN-01 11 6637688 6637688 G A TPP1 Silent p.L311L 0.45 TCGA-D8-A1JN-01 11 85435306 85435306 G A SYTL2 Nonsense_Mutation p.Q732* 0.49 TCGA-D8-A1JN-01 12 109889615 109889615 C T KCTD10 Missense_Mutation p.E243K 0.67 deleterious(0) possibly_damaging(0.643) TCGA-D8-A1JN-01 12 113599116 113599116 C T DDX54 Missense_Mutation p.R791Q 0.46 tolerated(0.41) benign(0.009) TCGA-D8-A1JN-01 12 120541722 120541722 G C RAB35 Missense_Mutation p.F45L 0.50 deleterious(0) probably_damaging(1) TCGA-D8-A1JN-01 12 52818269 52818269 C G KRT75 3'UTR 0.42 TCGA-D8-A1JN-01 12 53012235 53012235 G A KRT73 Missense_Mutation p.S25L 0.25 deleterious(0.04) benign(0.132) TCGA-D8-A1JN-01 12 53012283 53012283 G A KRT73 Missense_Mutation p.S9L 0.39 tolerated(0.06) benign(0.057) TCGA-D8-A1JN-01 12 53680434 53680434 C G ESPL1 Nonsense_Mutation p.S1305* 0.50 TCGA-D8-A1JN-01 12 57626352 57626352 G A SHMT2 Missense_Mutation p.M237I 0.47 tolerated(0.24) benign(0.02) TCGA-D8-A1JN-01 12 6701207 6701207 T A CHD4 Missense_Mutation p.I989F 0.37 deleterious(0) possibly_damaging(0.486) TCGA-D8-A1JN-01 12 6715439 6715439 C T CHD4 Splice_Site p.X34_splice 0.39 TCGA-D8-A1JN-01 12 69656307 69656307 C T CPSF6 Missense_Mutation p.R542C 0.46 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1JN-01 12 70989934 70989934 C T PTPRB Missense_Mutation p.E385K 0.35 tolerated(0.14) benign(0.03) TCGA-D8-A1JN-01 12 94972209 94972209 C G TMCC3 Missense_Mutation p.K364N 0.48 deleterious(0) possibly_damaging(0.872) TCGA-D8-A1JN-01 13 111371874 111371874 C T ING1 Silent p.P288P 0.62 TCGA-D8-A1JN-01 13 25049681 25049681 C T PARP4 Missense_Mutation p.D615N 0.34 deleterious(0.01) probably_damaging(0.917) TCGA-D8-A1JN-01 13 26967647 26967647 G A CDK8 Missense_Mutation p.D264N 0.51 tolerated(0.13) benign(0.078) TCGA-D8-A1JN-01 13 29599120 29599120 G A MTUS2 Silent p.L105L 0.53 TCGA-D8-A1JN-01 13 30091323 30091323 G A SLC7A1 Silent p.V545V 0.31 TCGA-D8-A1JN-01 13 36886556 36886556 C T SPG20 Silent p.K514K 0.47 TCGA-D8-A1JN-01 13 39438637 39438637 T A FREM2 Missense_Mutation p.F2626Y 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-D8-A1JN-01 13 99338507 99338507 C T SLC15A1 Silent p.L624L 0.49 TCGA-D8-A1JN-01 13 99460049 99460049 C G DOCK9 Missense_Mutation p.D1808H 0.44 deleterious(0) probably_damaging(0.988) TCGA-D8-A1JN-01 14 105416757 105416757 G A AHNAK2 Silent p.I1677I 0.46 TCGA-D8-A1JN-01 14 105418485 105418485 C A AHNAK2 Silent p.V1101V 0.36 TCGA-D8-A1JN-01 14 106308334 106308334 C T IGHD Silent p.E147E 0.47 TCGA-D8-A1JN-01 14 19553698 19553698 C G POTEG Silent p.L94L 0.09 TCGA-D8-A1JN-01 14 20019939 20019939 G C POTEM Silent p.L94L 0.10 TCGA-D8-A1JN-01 14 24036006 24036006 C T AP1G2 Intron 0.28 TCGA-D8-A1JN-01 14 33292059 33292059 C G AKAP6 Missense_Mutation p.I1680M 0.08 deleterious(0) possibly_damaging(0.779) TCGA-D8-A1JN-01 14 38061347 38061347 C A FOXA1 Missense_Mutation p.W214C 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1JN-01 14 44975125 44975125 C T FSCB Missense_Mutation p.E356K 0.32 tolerated(0.11) probably_damaging(0.942) TCGA-D8-A1JN-01 14 47389259 47389259 C A MDGA2 Missense_Mutation p.D732Y 0.42 deleterious(0) possibly_damaging(0.461) TCGA-D8-A1JN-01 14 50862466 50862466 C T CDKL1 Missense_Mutation p.D42N 0.43 deleterious(0.05) benign(0.134) TCGA-D8-A1JN-01 14 71058048 71058048 G A MED6 Nonsense_Mutation p.Q173* 0.42 TCGA-D8-A1JN-01 14 81864832 81864832 C G STON2 5'UTR 0.48 TCGA-D8-A1JN-01 15 42743279 42743279 C G ZNF106 Missense_Mutation p.M374I 0.38 tolerated(0.46) benign(0) TCGA-D8-A1JN-01 15 45398520 45398520 C T DUOX2 Missense_Mutation p.E651K 0.49 deleterious(0) probably_damaging(0.993) TCGA-D8-A1JN-01 15 64010840 64010840 C T HERC1 Missense_Mutation p.R1304Q 0.41 possibly_damaging(0.849) TCGA-D8-A1JN-01 15 65946274 65946274 C T SLC24A1 Silent p.L1053L 0.45 TCGA-D8-A1JN-01 15 72552860 72552860 G A PARP6 Nonsense_Mutation p.Q239* 0.55 TCGA-D8-A1JN-01 16 19477531 19477531 C G TMC5 Missense_Mutation p.T538S 0.40 deleterious(0.03) benign(0.009) TCGA-D8-A1JN-01 16 24166032 24166032 G A PRKCB Missense_Mutation p.D365N 0.50 deleterious(0.01) benign(0.021) TCGA-D8-A1JN-01 16 30795272 30795272 G A ZNF629 Missense_Mutation p.P126L 0.58 tolerated_low_confidence(0.06) benign(0.062) TCGA-D8-A1JN-01 16 31408729 31408729 C T ITGAD Missense_Mutation p.R63W 0.50 deleterious(0.03) benign(0.058) TCGA-D8-A1JN-01 16 4015811 4015811 C T ADCY9 Missense_Mutation p.E1343K 0.40 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D8-A1JN-01 16 66413240 66413240 G A CDH5 5'UTR 0.75 TCGA-D8-A1JN-01 16 71602632 71602632 G A TAT Silent p.V402V 0.80 TCGA-D8-A1JN-01 16 7568361 7568361 G C RBFOX1 Silent p.T100T 0.43 TCGA-D8-A1JN-01 16 89341577 89341577 G A ANKRD11 Missense_Mutation p.A2498V 0.81 possibly_damaging(0.842) TCGA-D8-A1JN-01 16 8988916 8988916 C T USP7 Missense_Mutation p.G1004E 0.42 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JN-01 17 29527590 29527590 C T NF1 Nonsense_Mutation p.Q347* 0.84 TCGA-D8-A1JN-01 17 41283243 41283243 C T NBR2 RNA 0.81 TCGA-D8-A1JN-01 17 60447652 60447652 G T EFCAB3 Translation_Start_Site p.M1? 0.70 tolerated_low_confidence(0.11) benign(0.005) TCGA-D8-A1JN-01 17 76117099 76117099 G A TMC6 Silent p.I510I 0.77 TCGA-D8-A1JN-01 19 14749063 14749063 G C EMR3 Silent p.L446L 0.46 TCGA-D8-A1JN-01 19 17015307 17015307 G A CPAMD8 Silent p.F1408F 0.33 TCGA-D8-A1JN-01 19 21579990 21579990 C T ZNF493 5'UTR 0.38 TCGA-D8-A1JN-01 19 23928047 23928047 C T ZNF681 Missense_Mutation p.R102K 0.41 tolerated(0.18) benign(0.364) TCGA-D8-A1JN-01 19 39207792 39207792 G A ACTN4 Missense_Mutation p.E327K 0.42 tolerated(0.64) benign(0.089) TCGA-D8-A1JN-01 19 40540443 40540443 G A ZNF780B Missense_Mutation p.H775Y 0.52 deleterious(0.01) benign(0) TCGA-D8-A1JN-01 19 41931969 41931969 C T B3GNT8 Missense_Mutation p.V239M 0.82 deleterious(0.01) probably_damaging(0.928) TCGA-D8-A1JN-01 19 4224161 4224164 ACAG - ANKRD24 Frame_Shift_Del p.Y1112* 0.28 TCGA-D8-A1JN-01 19 47425022 47425022 G C ARHGAP35 Missense_Mutation p.E1030D 0.28 tolerated(0.29) probably_damaging(0.99) TCGA-D8-A1JN-01 19 48789311 48789311 G C ZNF114 Missense_Mutation p.D144H 0.37 tolerated(0.06) possibly_damaging(0.861) TCGA-D8-A1JN-01 19 49637900 49637900 C T PPFIA3 Missense_Mutation p.S461F 0.41 tolerated(0.23) benign(0.352) TCGA-D8-A1JN-01 19 49912287 49912287 G A CCDC155 Missense_Mutation p.E353K 0.42 deleterious(0.05) possibly_damaging(0.487) TCGA-D8-A1JN-01 19 50164064 50164064 C T IRF3 Silent p.R340R 0.53 TCGA-D8-A1JN-01 19 52793484 52793484 C T ZNF766 Missense_Mutation p.S147L 0.38 tolerated(0.13) benign(0.007) TCGA-D8-A1JN-01 19 55224783 55224783 G A LILRP2 RNA 0.37 TCGA-D8-A1JN-01 19 7166387 7166387 C T INSR Missense_Mutation p.G547R 0.50 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JN-01 19 7917980 7917980 G A EVI5L Silent p.Q332Q 0.37 TCGA-D8-A1JN-01 19 9086981 9086981 C T MUC16 Missense_Mutation p.D1612N 0.44 unknown(0) TCGA-D8-A1JN-01 19 9325094 9325094 G T OR7D4 Silent p.L140L 0.35 TCGA-D8-A1JN-01 19 9524224 9524224 G A ZNF266 Silent p.S459S 0.44 TCGA-D8-A1JN-01 19 9677557 9677557 G A ZNF121 Missense_Mutation p.H78Y 0.42 tolerated(1) benign(0.001) TCGA-D8-A1JN-01 1 112020326 112020326 C G C1orf162 Missense_Mutation p.L86V 0.37 tolerated(0.23) benign(0.013) TCGA-D8-A1JN-01 1 11345847 11345847 G A UBIAD1 Missense_Mutation p.E226K 0.48 deleterious(0) possibly_damaging(0.728) TCGA-D8-A1JN-01 1 114165576 114165576 G A MAGI3 Silent p.L440L 0.39 TCGA-D8-A1JN-01 1 115284280 115284280 C T CSDE1 Silent p.E2E 0.47 TCGA-D8-A1JN-01 1 13108947 13108947 C G PRAMEF23 RNA 0.05 TCGA-D8-A1JN-01 1 149885119 149885119 C T SV2A Missense_Mutation p.E92K 0.28 deleterious(0) possibly_damaging(0.844) TCGA-D8-A1JN-01 1 150550932 150550932 C T MCL1 Missense_Mutation p.D242N 0.30 tolerated(0.11) benign(0.263) TCGA-D8-A1JN-01 1 151630881 151630881 A T SNX27 Silent p.G238G 0.39 TCGA-D8-A1JN-01 1 15441145 15441145 C T KAZN 3'UTR 0.50 TCGA-D8-A1JN-01 1 158054238 158054238 G A KIRREL Missense_Mutation p.G127R 0.26 deleterious(0) probably_damaging(0.974) TCGA-D8-A1JN-01 1 158576979 158576979 C T OR10Z1 Missense_Mutation p.H251Y 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1JN-01 1 158615335 158615335 C T SPTA1 Missense_Mutation p.E1316K 0.31 deleterious(0) possibly_damaging(0.707) TCGA-D8-A1JN-01 1 170508363 170508363 C T GORAB Missense_Mutation p.P50L 0.25 tolerated(0.08) possibly_damaging(0.687) TCGA-D8-A1JN-01 1 171527054 171527054 C G PRRC2C Missense_Mutation p.Q1933E 0.30 benign(0.388) TCGA-D8-A1JN-01 1 192628465 192628465 C G RGS13 Intron 0.29 TCGA-D8-A1JN-01 1 202418189 202418189 C A PPP1R12B Silent p.L580L 0.27 TCGA-D8-A1JN-01 1 223284238 223284238 G C TLR5 Silent p.L712L 0.17 TCGA-D8-A1JN-01 1 226334330 226334330 C G ACBD3 Missense_Mutation p.R523T 0.28 deleterious(0) probably_damaging(0.99) TCGA-D8-A1JN-01 1 229738611 229738611 G A TAF5L Silent p.V101V 0.24 TCGA-D8-A1JN-01 1 34006792 34006792 C A CSMD2 Missense_Mutation p.R2988I 0.44 tolerated(0.28) benign(0.021) TCGA-D8-A1JN-01 1 37267521 37267521 G A GRIK3 Silent p.F897F 0.40 TCGA-D8-A1JN-01 1 43892848 43892848 C T SZT2 Missense_Mutation p.S1087L 0.39 tolerated(0.08) benign(0.017) TCGA-D8-A1JN-01 1 45821062 45821062 A T TESK2 Silent p.T151T 0.56 TCGA-D8-A1JN-01 1 6311568 6311568 C T GPR153 Missense_Mutation p.R270Q 0.26 deleterious(0.04) benign(0.031) TCGA-D8-A1JN-01 1 84945165 84945165 C T RPF1 Silent p.F67F 0.33 TCGA-D8-A1JN-01 20 18429657 18429657 C T DZANK1 Missense_Mutation p.M200I 0.37 tolerated(0.08) benign(0.41) TCGA-D8-A1JN-01 20 32267773 32267776 TTTC ATTTA E2F1 Frame_Shift_Ins p.S121Ffs*9 0.28 TCGA-D8-A1JN-01 20 36625247 36625247 C T TTI1 Missense_Mutation p.A968T 0.40 tolerated(0.06) benign(0.159) TCGA-D8-A1JN-01 20 58560082 58560082 C T CDH26 Silent p.I245I 0.53 TCGA-D8-A1JN-01 20 61430926 61430926 C T MRGBP Silent p.V182V 0.40 TCGA-D8-A1JN-01 21 11039076 11039076 C G BAGE2 RNA 0.07 TCGA-D8-A1JN-01 21 42754408 42754408 G A MX2 Missense_Mutation p.E217K 0.44 tolerated(0.07) possibly_damaging(0.811) TCGA-D8-A1JN-01 21 45648909 45648909 A G ICOSLG 3'UTR 0.43 TCGA-D8-A1JN-01 21 45959542 45959542 G C KRTAP10-1 Missense_Mutation p.C164W 0.40 deleterious(0) unknown(0) TCGA-D8-A1JN-01 22 21345981 21345981 G A LZTR1 Missense_Mutation p.G286R 0.45 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JN-01 22 31485771 31485771 A G SMTN Silent p.T186T 0.75 TCGA-D8-A1JN-01 22 40055477 40055477 C T CACNA1I Silent p.L790L 0.71 TCGA-D8-A1JN-01 22 50301366 50301367 CA - ALG12 Splice_Site p.X331_splice 0.78 TCGA-D8-A1JN-01 22 50591632 50591632 C A MOV10L1 Silent p.I1017I 0.74 TCGA-D8-A1JN-01 2 109276172 109276172 C T LIMS1 Silent p.F98F 0.32 TCGA-D8-A1JN-01 2 113089006 113089006 C G ZC3H6 Missense_Mutation p.F837L 0.81 tolerated(0.1) benign(0.104) TCGA-D8-A1JN-01 2 138000073 138000073 C T THSD7B Missense_Mutation p.P733S 0.45 deleterious(0.03) benign(0.413) TCGA-D8-A1JN-01 2 179499240 179499240 C G TTN Missense_Mutation p.D14090H 0.48 TCGA-D8-A1JN-01 2 179649010 179649010 C G TTN Missense_Mutation p.K854N 0.49 TCGA-D8-A1JN-01 2 183699435 183699435 G A FRZB 3'UTR 0.41 TCGA-D8-A1JN-01 2 202410312 202410312 C T ALS2CR11 Silent p.T372T 0.37 TCGA-D8-A1JN-01 2 216284067 216284067 C T FN1 Missense_Mutation p.G573R 0.43 deleterious(0) probably_damaging(1) TCGA-D8-A1JN-01 2 227661256 227661256 C T IRS1 Missense_Mutation p.M733I 0.31 tolerated(0.85) benign(0) TCGA-D8-A1JN-01 2 242611609 242611609 C T ATG4B Missense_Mutation p.S371F 0.43 tolerated(0.25) benign(0.002) TCGA-D8-A1JN-01 2 39025372 39025372 G C DHX57 3'UTR 0.45 TCGA-D8-A1JN-01 2 70486522 70486522 C T PCYOX1 Missense_Mutation p.S48L 0.44 deleterious(0) probably_damaging(0.914) TCGA-D8-A1JN-01 2 86260895 86260895 C G POLR1A Silent p.L1350L 0.53 TCGA-D8-A1JN-01 2 90199046 90199046 G T IGKV1D-12 Silent p.L69L 0.41 TCGA-D8-A1JN-01 3 122121674 122121674 G C FAM162A Missense_Mutation p.L34F 0.40 tolerated(0.07) benign(0.202) TCGA-D8-A1JN-01 3 122667367 122667367 G T SEMA5B Missense_Mutation p.T159N 0.32 tolerated(0.13) possibly_damaging(0.452) TCGA-D8-A1JN-01 3 129183529 129183529 C A IFT122 Silent p.I207I 0.39 TCGA-D8-A1JN-01 3 12977058 12977058 G A IQSEC1 Silent p.L500L 0.44 TCGA-D8-A1JN-01 3 137886069 137886069 G C DBR1 Missense_Mutation p.L190V 0.42 deleterious(0) possibly_damaging(0.678) TCGA-D8-A1JN-01 3 165548178 165548178 C T BCHE Missense_Mutation p.G215E 0.07 deleterious(0) probably_damaging(1) TCGA-D8-A1JN-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.52 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1JN-01 3 49755912 49755912 G A AMIGO3 Silent p.I329I 0.53 TCGA-D8-A1JN-01 3 99979901 99979901 G C TBC1D23 Silent p.S13S 0.26 TCGA-D8-A1JN-01 4 102839158 102839158 T G BANK1 Missense_Mutation p.F340V 0.47 tolerated(0.2) benign(0.169) TCGA-D8-A1JN-01 4 175252788 175252788 C T CEP44 3'UTR 0.44 TCGA-D8-A1JN-01 4 175899085 175899085 G C ADAM29 Missense_Mutation p.Q803H 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-D8-A1JN-01 4 17609340 17609340 G A LAP3 3'UTR 0.56 TCGA-D8-A1JN-01 4 25671395 25671395 C T SLC34A2 Silent p.F254F 0.39 TCGA-D8-A1JN-01 5 122714068 122714068 C A CEP120 Nonsense_Mutation p.E720* 0.42 TCGA-D8-A1JN-01 5 140529776 140529776 G A PCDHB6 5'Flank 0.45 TCGA-D8-A1JN-01 5 140719585 140719585 G A PCDHGA2 Missense_Mutation p.M349I 0.51 tolerated_low_confidence(1) benign(0.003) TCGA-D8-A1JN-01 5 172324039 172324039 C T ERGIC1 Silent p.L39L 0.46 TCGA-D8-A1JN-01 5 37026381 37026394 CAATGACAAAGAAG - NIPBL Frame_Shift_Del p.A1925Nfs*17 0.26 TCGA-D8-A1JN-01 5 38490331 38490331 G A LIFR Nonsense_Mutation p.Q710* 0.37 TCGA-D8-A1JN-01 5 88056820 88056820 C T MEF2C Silent p.K147K 0.32 TCGA-D8-A1JN-01 5 94936613 94936613 G C ARSK Missense_Mutation p.E387Q 0.33 tolerated(0.27) benign(0.091) TCGA-D8-A1JN-01 5 95744025 95744025 C T PCSK1 Silent p.T366T 0.41 TCGA-D8-A1JN-01 6 117997186 117997186 C G NUS1 Missense_Mutation p.A118G 0.29 deleterious(0.01) possibly_damaging(0.829) TCGA-D8-A1JN-01 6 13977226 13977226 C T RNF182 5'UTR 0.33 TCGA-D8-A1JN-01 6 13977702 13977702 C G RNF182 Missense_Mutation p.L118V 0.43 tolerated(0.53) benign(0.049) TCGA-D8-A1JN-01 6 159239157 159239157 G A EZR 5'UTR 0.40 TCGA-D8-A1JN-01 6 36181964 36181964 C G BRPF3 Silent p.L930L 0.40 TCGA-D8-A1JN-01 6 4115997 4115997 G C ECI2 3'UTR 0.40 TCGA-D8-A1JN-01 6 43112230 43112230 G A PTK7 Missense_Mutation p.E773K 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A1JN-01 6 7578090 7578090 C T DSP Nonsense_Mutation p.Q986* 0.37 TCGA-D8-A1JN-01 6 8073643 8073643 G T EEF1E1-BLOC1S5 Intron 0.50 TCGA-D8-A1JN-01 7 100030928 100030928 G C MEPCE Missense_Mutation p.E645Q 0.36 tolerated(0.1) possibly_damaging(0.529) TCGA-D8-A1JN-01 7 102116688 102116688 G T POLR2J Missense_Mutation p.P28H 0.40 deleterious(0) possibly_damaging(0.771) TCGA-D8-A1JN-01 7 107408026 107408026 C A SLC26A3 Nonsense_Mutation p.E757* 0.38 TCGA-D8-A1JN-01 7 122342073 122342073 G A RNF148 Silent p.L244L 0.36 TCGA-D8-A1JN-01 7 149514749 149514749 G A SSPO RNA 0.64 TCGA-D8-A1JN-01 7 150706129 150706129 G A NOS3 Missense_Mutation p.E742K 0.44 tolerated(0.28) benign(0.003) TCGA-D8-A1JN-01 7 150754948 150754948 G A CDK5 5'UTR 0.51 TCGA-D8-A1JN-01 7 150774051 150774051 C G FASTK Silent p.S497S 0.50 TCGA-D8-A1JN-01 7 43548854 43548854 G A HECW1 Intron 0.50 TCGA-D8-A1JN-01 7 72952297 72952297 G A BCL7B Silent p.L161L 0.04 TCGA-D8-A1JN-01 7 86468257 86468257 G T GRM3 Missense_Mutation p.G476V 0.60 deleterious(0.01) benign(0.1) TCGA-D8-A1JN-01 7 92120666 92120666 C A PEX1 Nonsense_Mutation p.E1120* 0.45 TCGA-D8-A1JN-01 8 132051878 132051878 C T ADCY8 Silent p.K234K 0.50 TCGA-D8-A1JN-01 8 21938679 21938679 C T DMTN Missense_Mutation p.P360L 0.13 tolerated(0.09) probably_damaging(0.914) TCGA-D8-A1JN-01 8 48694776 48694776 C T PRKDC Silent p.L3811L 0.30 TCGA-D8-A1JN-01 8 70981503 70981503 G A PRDM14 Missense_Mutation p.T198M 0.47 deleterious(0) probably_damaging(0.92) TCGA-D8-A1JN-01 9 111849507 111849507 G A TMEM245 Silent p.L422L 0.40 TCGA-D8-A1JN-01 9 125582781 125582781 C T PDCL Silent p.E163E 0.33 TCGA-D8-A1JN-01 9 130249962 130249962 G A LRSAM1 Missense_Mutation p.E423K 0.51 tolerated(0.12) benign(0.012) TCGA-D8-A1JN-01 9 138439791 138439791 C T OBP2A Missense_Mutation p.R118C 0.26 tolerated(0.07) benign(0.018) TCGA-D8-A1JN-01 9 34996744 34996744 G A DNAJB5 Missense_Mutation p.D346N 0.50 tolerated(0.18) probably_damaging(0.993) TCGA-D8-A1JN-01 9 35749395 35749395 G A RGP1 5'UTR 0.38 TCGA-D8-A1JN-01 9 95086375 95086375 G T NOL8 Missense_Mutation p.D23E 0.31 tolerated(0.43) possibly_damaging(0.826) TCGA-D8-A1JN-01 X 123514646 123514646 C T TENM1 Missense_Mutation p.E2647K 0.45 deleterious(0.01) possibly_damaging(0.666) TCGA-D8-A1JN-01 X 134186091 134186091 G C FAM127B Silent p.L16L 0.39 TCGA-D8-A1JN-01 X 146993659 146993659 C T FMR1 5'UTR 0.37 TCGA-D8-A1JN-01 X 47074208 47074208 G T UBA1 Silent p.V1019V 0.44 TCGA-D8-A1JN-01 X 47307019 47307019 C G ZNF41 Missense_Mutation p.R717T 0.38 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JN-01 X 49106129 49106129 C G CCDC22 Missense_Mutation p.I571M 0.53 deleterious(0.05) probably_damaging(0.954) TCGA-D8-A1JN-01 X 49773117 49773117 G A CLCN5 Intron 0.48 TCGA-D8-A1JN-01 X 63412446 63412446 G C AMER1 Missense_Mutation p.P241A 0.49 tolerated(0.54) benign(0.012) TCGA-D8-A1JN-01 X 70516865 70516865 G A NONO Missense_Mutation p.R304H 0.43 tolerated(0.39) benign(0.029) TCGA-D8-A1JN-01 X 85236772 85236772 G A CHM Missense_Mutation p.S53L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1JP-01 10 50530518 50530518 A T C10orf71 5'UTR 0.22 TCGA-D8-A1JP-01 10 53893644 53893644 C A PRKG1 Missense_Mutation p.T327N 0.34 tolerated(0.17) benign(0.094) TCGA-D8-A1JP-01 11 102269380 102269380 T C TMEM123 3'UTR 0.50 TCGA-D8-A1JP-01 11 18137607 18137607 C - MRGPRX3 5'Flank 0.36 TCGA-D8-A1JP-01 11 18566322 18566330 GTTACATAG - UEVLD In_Frame_Del p.Y301_T303del 0.29 TCGA-D8-A1JP-01 11 290850 290850 C G ATHL1 Missense_Mutation p.L215V 0.55 tolerated(0.14) benign(0.009) TCGA-D8-A1JP-01 11 31452021 31452021 C G DNAJC24 3'UTR 0.38 TCGA-D8-A1JP-01 11 55761642 55761642 G A OR5F1 Silent p.L154L 0.25 TCGA-D8-A1JP-01 11 57995900 57995900 C A OR10Q1 Missense_Mutation p.G150C 0.31 deleterious(0.03) benign(0.008) TCGA-D8-A1JP-01 11 68359089 68359089 C A PPP6R3 Missense_Mutation p.Q611K 0.36 deleterious(0.05) possibly_damaging(0.804) TCGA-D8-A1JP-01 11 71907115 71907115 A T FOLR1 Missense_Mutation p.E223V 0.30 tolerated(0.51) benign(0.188) TCGA-D8-A1JP-01 12 109278917 109278917 C G DAO Silent p.T45T 0.27 TCGA-D8-A1JP-01 12 121001615 121001615 G A RNF10 Missense_Mutation p.E512K 0.33 deleterious(0.02) possibly_damaging(0.652) TCGA-D8-A1JP-01 12 133331390 133331390 C A ANKLE2 Missense_Mutation p.V171L 0.47 tolerated(0.35) benign(0.004) TCGA-D8-A1JP-01 12 40699719 40699719 C T LRRK2 Missense_Mutation p.L1304F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JP-01 12 48539018 48539018 T C PFKM Silent p.D777D 0.55 TCGA-D8-A1JP-01 12 53002135 53002135 C A KRT73 Missense_Mutation p.G490C 0.24 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-D8-A1JP-01 12 56352282 56352282 G T PMEL Missense_Mutation p.S148R 0.38 tolerated(0.84) benign(0.041) TCGA-D8-A1JP-01 12 62929447 62929447 A C MON2 Missense_Mutation p.T620P 0.21 tolerated(0.08) benign(0.126) TCGA-D8-A1JP-01 12 7177194 7177194 C T C1S Nonsense_Mutation p.Q436* 0.31 TCGA-D8-A1JP-01 13 21875736 21875736 C T LINC00422 3'Flank 0.26 TCGA-D8-A1JP-01 13 24438286 24438286 G A MIPEP Missense_Mutation p.S329F 0.26 tolerated(0.69) benign(0.014) TCGA-D8-A1JP-01 13 24465974 24465974 G A C1QTNF9B Silent p.G152G 0.14 TCGA-D8-A1JP-01 13 32914385 32914385 C - BRCA2 Frame_Shift_Del p.L1965Ffs*39 0.34 TCGA-D8-A1JP-01 14 100363567 100363567 G T EML1 Missense_Mutation p.V274L 0.57 deleterious(0) probably_damaging(0.924) TCGA-D8-A1JP-01 14 20344814 20344814 C G OR4K2 Missense_Mutation p.L130V 0.14 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JP-01 14 65008759 65008759 G A HSPA2 Missense_Mutation p.D398N 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1JP-01 14 71576307 71576307 C T PCNX Missense_Mutation p.H2295Y 0.19 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-D8-A1JP-01 14 73743366 73743366 T G NUMB Missense_Mutation p.K626Q 0.19 deleterious(0) possibly_damaging(0.889) TCGA-D8-A1JP-01 14 74489718 74489718 G C CCDC176 Missense_Mutation p.K52N 0.31 deleterious(0) benign(0.085) TCGA-D8-A1JP-01 14 90650936 90650936 C G KCNK13 Missense_Mutation p.I272M 0.45 deleterious(0.03) possibly_damaging(0.626) TCGA-D8-A1JP-01 14 92958083 92958083 T C SLC24A4 Missense_Mutation p.W538R 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A1JP-01 14 93424627 93424627 G A ITPK1 Silent p.L197L 0.38 TCGA-D8-A1JP-01 15 75042230 75042230 C G CYP1A2 Missense_Mutation p.L51V 0.28 tolerated(0.69) benign(0.007) TCGA-D8-A1JP-01 15 75562427 75562427 A C GOLGA6C Missense_Mutation p.S657R 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-D8-A1JP-01 15 80181544 80181544 C G ST20-MTHFS Missense_Mutation p.M66I 0.29 deleterious(0) possibly_damaging(0.69) TCGA-D8-A1JP-01 15 83218208 83218208 A C CPEB1 Splice_Site p.X467_splice 0.18 TCGA-D8-A1JP-01 15 90167547 90167547 G A TICRR Missense_Mutation p.G1336R 0.21 tolerated_low_confidence(0.49) benign(0.018) TCGA-D8-A1JP-01 15 91419739 91419739 C T FURIN Silent p.D108D 0.14 TCGA-D8-A1JP-01 15 92638112 92638112 A T SLCO3A1 Silent p.G216G 0.23 TCGA-D8-A1JP-01 15 94841832 94841832 T A MCTP2 Missense_Mutation p.L113H 0.18 tolerated(0.22) benign(0.248) TCGA-D8-A1JP-01 16 14748927 14748927 C G BFAR Missense_Mutation p.L215V 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JP-01 16 27517381 27517381 C T GTF3C1 Missense_Mutation p.G537R 0.22 tolerated(0.24) benign(0.01) TCGA-D8-A1JP-01 16 569771 569771 G A RAB11FIP3 Silent p.L580L 0.38 TCGA-D8-A1JP-01 16 88014716 88014716 C A BANP Missense_Mutation p.Q49K 0.50 deleterious_low_confidence(0.03) benign(0.066) TCGA-D8-A1JP-01 16 88804214 88804214 C T PIEZO1 Silent p.E343E 0.49 TCGA-D8-A1JP-01 17 2282366 2282366 T C SGSM2 Missense_Mutation p.V979A 0.66 tolerated(0.05) benign(0.015) TCGA-D8-A1JP-01 17 30536237 30536237 T C RHOT1 Intron 0.45 TCGA-D8-A1JP-01 17 3195744 3195744 T G OR3A1 Missense_Mutation p.N45H 0.58 deleterious(0) probably_damaging(0.992) TCGA-D8-A1JP-01 17 48195557 48195557 C G SAMD14 Missense_Mutation p.D60H 0.38 deleterious(0.01) possibly_damaging(0.849) TCGA-D8-A1JP-01 17 649578 649578 C A GEMIN4 Missense_Mutation p.V569L 0.31 deleterious(0.01) possibly_damaging(0.527) TCGA-D8-A1JP-01 17 74071177 74071177 C A GALR2 Missense_Mutation p.D71E 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A1JP-01 18 13884723 13884723 G A MC2R Silent p.I265I 0.38 TCGA-D8-A1JP-01 19 10097037 10097037 G A COL5A3 Missense_Mutation p.A769V 0.36 unknown(0) TCGA-D8-A1JP-01 19 19327774 19327774 G T NCAN Silent p.P4P 0.28 TCGA-D8-A1JP-01 19 33134043 33134043 C A ANKRD27 Silent p.V256V 0.37 TCGA-D8-A1JP-01 19 38610164 38610164 C G SIPA1L3 Missense_Mutation p.P837R 0.31 deleterious(0) probably_damaging(0.937) TCGA-D8-A1JP-01 19 44832009 44832009 T G ZNF112 Silent p.G773G 0.34 TCGA-D8-A1JP-01 19 46334728 46334728 A C SYMPK Silent p.G504G 0.42 TCGA-D8-A1JP-01 19 6270707 6270707 C G MLLT1 Missense_Mutation p.E26Q 0.44 deleterious(0.03) possibly_damaging(0.522) TCGA-D8-A1JP-01 19 9089493 9089493 G T MUC16 Silent p.T774T 0.28 TCGA-D8-A1JP-01 1 114340437 114340437 A G RSBN1 Missense_Mutation p.F309L 0.54 tolerated_low_confidence(0.44) benign(0.004) TCGA-D8-A1JP-01 1 160252800 160252800 A C PEX19 Missense_Mutation p.L94V 0.34 tolerated(0.09) probably_damaging(0.984) TCGA-D8-A1JP-01 1 160769623 160769623 A C LY9 Missense_Mutation p.I69L 0.19 tolerated(0.23) benign(0.395) TCGA-D8-A1JP-01 1 1635323 1635323 C A CDK11A Silent p.L617L 0.31 TCGA-D8-A1JP-01 1 180063342 180063342 C T CEP350 Missense_Mutation p.T2701I 0.24 benign(0.003) TCGA-D8-A1JP-01 1 182441609 182441609 A T RGSL1 Missense_Mutation p.Y127F 0.25 tolerated(0.59) benign(0.094) TCGA-D8-A1JP-01 1 20230830 20230830 A T OTUD3 Missense_Mutation p.D226V 0.19 deleterious(0.01) possibly_damaging(0.616) TCGA-D8-A1JP-01 1 204412686 204412686 G A PIK3C2B Silent p.I969I 0.11 TCGA-D8-A1JP-01 1 215747424 215747436 GTGGGAGAATTTC - KCTD3 Frame_Shift_Del p.S49Kfs*23 0.12 TCGA-D8-A1JP-01 1 220195746 220195746 T A EPRS Missense_Mutation p.D353V 0.27 deleterious(0) probably_damaging(0.994) TCGA-D8-A1JP-01 1 248224268 248224268 G T OR2L3 Silent p.G95G 0.36 TCGA-D8-A1JP-01 1 248224269 248224269 T C OR2L3 Missense_Mutation p.C96R 0.36 deleterious(0) probably_damaging(0.98) TCGA-D8-A1JP-01 1 248344298 248344308 CAAAATACTAG - OR2M2 Frame_Shift_Del p.K338Ifs*? 0.18 TCGA-D8-A1JP-01 1 55464896 55464896 G T BSND Missense_Mutation p.V13L 0.22 deleterious(0.01) benign(0.203) TCGA-D8-A1JP-01 1 76349385 76349385 T G MSH4 Silent p.P662P 0.30 TCGA-D8-A1JP-01 1 99764684 99764684 G A LPPR4 Missense_Mutation p.C211Y 0.57 deleterious(0) probably_damaging(1) TCGA-D8-A1JP-01 20 20033136 20033136 C A CRNKL1 Missense_Mutation p.A112S 0.27 deleterious_low_confidence(0.01) benign(0.018) TCGA-D8-A1JP-01 20 25204757 25204757 C T ENTPD6 Silent p.L403L 0.10 TCGA-D8-A1JP-01 20 39831411 39831411 T C ZHX3 Missense_Mutation p.I716V 0.17 tolerated(0.33) benign(0) TCGA-D8-A1JP-01 21 35209377 35209377 G C ITSN1 Intron 0.06 TCGA-D8-A1JP-01 21 38845158 38845158 G C DYRK1A Missense_Mutation p.Q61H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.73) TCGA-D8-A1JP-01 22 22890903 22890903 C T PRAME Silent p.L372L 0.30 TCGA-D8-A1JP-01 22 24837011 24837011 G T ADORA2A Missense_Mutation p.A265S 0.50 tolerated(0.5) benign(0.11) TCGA-D8-A1JP-01 22 24837012 24837012 C T ADORA2A Missense_Mutation p.A265V 0.50 tolerated(0.27) benign(0.011) TCGA-D8-A1JP-01 22 43308041 43308041 C T PACSIN2 Missense_Mutation p.D16N 0.07 tolerated(0.07) possibly_damaging(0.653) TCGA-D8-A1JP-01 22 43308058 43308058 C G PACSIN2 Missense_Mutation p.G10A 0.07 tolerated(0.99) possibly_damaging(0.606) TCGA-D8-A1JP-01 22 50279223 50279223 C T ZBED4 Missense_Mutation p.A638V 0.47 tolerated(0.13) benign(0.025) TCGA-D8-A1JP-01 2 105979846 105979846 A T FHL2 Missense_Mutation p.L195Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JP-01 2 167163093 167163093 T C SCN9A Missense_Mutation p.I132V 0.39 deleterious(0) possibly_damaging(0.573) TCGA-D8-A1JP-01 2 175260433 175260433 C T CIR1 5'UTR 0.36 TCGA-D8-A1JP-01 2 178988887 178988887 C G RBM45 Missense_Mutation p.Q368E 0.42 tolerated(0.1) benign(0.015) TCGA-D8-A1JP-01 2 179433377 179433377 T C TTN Missense_Mutation p.T25828A 0.34 TCGA-D8-A1JP-01 2 209190360 209190360 A G PIKFYVE Missense_Mutation p.E942G 0.29 tolerated(0.24) benign(0.001) TCGA-D8-A1JP-01 2 63283477 63283477 A G OTX1 3'UTR 0.58 TCGA-D8-A1JP-01 3 112358086 112358086 T A CCDC80 Missense_Mutation p.M223L 0.26 tolerated(0.35) benign(0.22) TCGA-D8-A1JP-01 3 119899984 119899986 GAT - GPR156 In_Frame_Del p.I307del 0.31 TCGA-D8-A1JP-01 3 124281865 124281865 C G KALRN Missense_Mutation p.P75R 0.33 deleterious(0.03) probably_damaging(0.96) TCGA-D8-A1JP-01 3 124951438 124951438 G A ZNF148 Missense_Mutation p.S711F 0.23 deleterious(0.01) possibly_damaging(0.687) TCGA-D8-A1JP-01 3 151046415 151046415 G C P2RY13 Silent p.L143L 0.16 TCGA-D8-A1JP-01 3 156570747 156570747 T C LEKR1 Missense_Mutation p.I80T 0.34 tolerated(0.77) benign(0) TCGA-D8-A1JP-01 3 178916946 178916946 G C PIK3CA Missense_Mutation p.K111N 0.48 deleterious(0) probably_damaging(0.989) TCGA-D8-A1JP-01 3 185867820 185867820 G C DGKG 3'UTR 0.52 TCGA-D8-A1JP-01 3 187447483 187447483 G A BCL6 Missense_Mutation p.P237L 0.28 tolerated(0.58) benign(0.021) TCGA-D8-A1JP-01 3 190374301 190374301 G T IL1RAP Missense_Mutation p.G657C 0.19 deleterious_low_confidence(0.05) possibly_damaging(0.9) TCGA-D8-A1JP-01 5 137515355 137515355 G T KIF20A 5'UTR 0.19 TCGA-D8-A1JP-01 5 158135133 158135133 T G EBF1 Missense_Mutation p.N533T 0.53 tolerated_low_confidence(0.15) benign(0.001) TCGA-D8-A1JP-01 5 176004753 176004753 T A CDHR2 Missense_Mutation p.V489E 0.09 deleterious(0) probably_damaging(0.996) TCGA-D8-A1JP-01 5 176471467 176471467 G C ZNF346 Missense_Mutation p.Q150H 0.46 deleterious(0.02) possibly_damaging(0.866) TCGA-D8-A1JP-01 5 74047238 74047238 T C GFM2 Missense_Mutation p.T129A 0.54 deleterious(0) possibly_damaging(0.868) TCGA-D8-A1JP-01 6 100006241 100006241 A C CCNC Intron 0.27 TCGA-D8-A1JP-01 6 100369062 100369062 G A MCHR2 Silent p.V259V 0.18 TCGA-D8-A1JP-01 6 106554322 106554322 A G PRDM1 Missense_Mutation p.H617R 0.17 deleterious(0) probably_damaging(0.976) TCGA-D8-A1JP-01 6 110064914 110064914 T A FIG4 Missense_Mutation p.L359H 0.32 tolerated(0.23) benign(0.209) TCGA-D8-A1JP-01 6 116977852 116977857 GTTTTT - ZUFSP In_Frame_Del p.K318_T319del 0.20 TCGA-D8-A1JP-01 6 124676413 124676413 T C NKAIN2 Missense_Mutation p.Y65H 0.15 deleterious(0.01) benign(0.177) TCGA-D8-A1JP-01 6 138655269 138655269 C A KIAA1244 Silent p.I1762I 0.67 TCGA-D8-A1JP-01 6 159670141 159670141 G T FNDC1 Silent p.V1587V 0.24 TCGA-D8-A1JP-01 6 160958958 160958958 C A LPA Missense_Mutation p.C1924F 0.26 deleterious(0.01) benign(0.105) TCGA-D8-A1JP-01 6 28359437 28359437 G A ZSCAN12 Silent p.S210S 0.29 TCGA-D8-A1JP-01 6 56483286 56483286 A T DST Intron 0.41 TCGA-D8-A1JP-01 6 56483307 56483307 A T DST Intron 0.43 TCGA-D8-A1JP-01 7 107748102 107748102 C A LAMB4 Missense_Mutation p.D189Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-D8-A1JP-01 7 128452928 128452928 A C CCDC136 Missense_Mutation p.K903T 0.30 deleterious(0) possibly_damaging(0.804) TCGA-D8-A1JP-01 7 142223987 142223987 C T TRBV11-1 Silent p.Q60Q 0.31 TCGA-D8-A1JP-01 7 151960149 151960149 A T KMT2C Nonsense_Mutation p.C417* 0.21 TCGA-D8-A1JP-01 7 31018861 31018870 CTGCCTCATC - GHRHR 3'UTR 0.13 TCGA-D8-A1JP-01 8 101237494 101237494 T G SPAG1 Silent p.A594A 0.09 TCGA-D8-A1JP-01 8 106431375 106431375 C A ZFPM2 Missense_Mutation p.P15Q 0.16 deleterious(0.04) probably_damaging(0.968) TCGA-D8-A1JP-01 8 106431376 106431376 G A ZFPM2 Silent p.P15P 0.16 TCGA-D8-A1JP-01 8 123964616 123964616 A C ZHX2 Missense_Mutation p.Q289P 0.29 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JP-01 8 17867196 17867196 A G PCM1 Silent p.K1701K 0.52 TCGA-D8-A1JP-01 8 22424226 22424226 G A SORBS3 Silent p.K381K 0.90 TCGA-D8-A1JP-01 8 25766024 25766024 G C EBF2 Missense_Mutation p.T200R 0.08 deleterious(0) probably_damaging(0.979) TCGA-D8-A1JP-01 8 77617384 77617384 T C ZFHX4 Missense_Mutation p.I354T 0.03 benign(0.291) TCGA-D8-A1JP-01 9 108424759 108424759 C G TAL2 5'UTR 0.16 TCGA-D8-A1JP-01 9 114466195 114466195 A C C9orf84 Missense_Mutation p.V914G 0.34 deleterious(0) possibly_damaging(0.877) TCGA-D8-A1JP-01 9 34514447 34514447 C G DNAI1 Nonsense_Mutation p.S542* 0.31 TCGA-D8-A1JP-01 9 80043864 80043864 G A GNA14 Silent p.L228L 0.36 TCGA-D8-A1JP-01 X 106066568 106066568 G A TBC1D8B Missense_Mutation p.M233I 0.17 deleterious(0) probably_damaging(0.96) TCGA-D8-A1JP-01 X 115586588 115586588 T C SLC6A14 Missense_Mutation p.W524R 0.04 deleterious(0) probably_damaging(0.954) TCGA-D8-A1JP-01 X 151514123 151514123 G T GABRA3 Silent p.I64I 0.36 TCGA-D8-A1JP-01 X 67941499 67941499 A C STARD8 Missense_Mutation p.E790D 0.52 deleterious(0.04) benign(0.003) TCGA-D8-A1JS-01 10 99527450 99527450 C G SFRP5 Missense_Mutation p.D259H 0.40 tolerated(0.07) probably_damaging(0.95) TCGA-D8-A1JS-01 11 126075478 126075478 G A RPUSD4 Silent p.D227D 0.41 TCGA-D8-A1JS-01 12 53722234 53722234 C T SP7 Missense_Mutation p.C331Y 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A1JS-01 12 68595501 68595501 C A IL26 3'UTR 0.65 TCGA-D8-A1JS-01 14 50623747 50623747 C T SOS2 Missense_Mutation p.R676H 0.38 deleterious(0) probably_damaging(0.997) TCGA-D8-A1JS-01 15 50897216 50897216 T C TRPM7 Silent p.A945A 0.05 TCGA-D8-A1JS-01 16 22358192 22358193 - T CDR2 3'UTR 0.40 TCGA-D8-A1JS-01 17 42766938 42766938 C T CCDC43 Missense_Mutation p.G62R 0.37 deleterious(0) probably_damaging(0.928) TCGA-D8-A1JS-01 18 13438301 13438301 C A LDLRAD4 Missense_Mutation p.N33K 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-D8-A1JS-01 19 13370458 13370458 C T CACNA1A Silent p.K1436K 0.36 TCGA-D8-A1JS-01 19 9076395 9076395 C T MUC16 Missense_Mutation p.S3684N 0.27 unknown(0) TCGA-D8-A1JS-01 1 109774392 109774392 A T SARS Missense_Mutation p.D244V 0.41 deleterious(0) probably_damaging(0.98) TCGA-D8-A1JS-01 1 228596888 228596888 G C TRIM17 Missense_Mutation p.L290V 0.52 deleterious(0.04) possibly_damaging(0.907) TCGA-D8-A1JS-01 1 236721601 236721601 C T HEATR1 Missense_Mutation p.A1714T 0.31 deleterious(0) possibly_damaging(0.855) TCGA-D8-A1JS-01 1 32798616 32798616 A T HDAC1 Splice_Site p.X474_splice 0.46 TCGA-D8-A1JS-01 20 32265318 32265318 G A E2F1 Missense_Mutation p.R252C 0.38 deleterious(0.01) possibly_damaging(0.612) TCGA-D8-A1JS-01 21 46309941 46309941 C T ITGB2 Missense_Mutation p.D537N 0.44 deleterious(0.04) benign(0.134) TCGA-D8-A1JS-01 2 197674214 197674215 - T C2orf66 5'UTR 0.23 TCGA-D8-A1JS-01 2 207040859 207040859 G A GPR1 3'UTR 0.44 TCGA-D8-A1JS-01 3 178921548 178921548 G A PIK3CA Missense_Mutation p.V344M 0.50 deleterious(0) probably_damaging(0.987) TCGA-D8-A1JS-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.53 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A1JS-01 3 9425945 9425945 G A THUMPD3 Missense_Mutation p.E429K 0.60 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JS-01 4 106604454 106604454 T A INTS12 Silent p.G275G 0.71 TCGA-D8-A1JS-01 4 728744 728744 A T PCGF3 Missense_Mutation p.Y45F 0.42 deleterious(0.05) benign(0.211) TCGA-D8-A1JS-01 4 84377236 84377236 C T MRPS18C Silent p.A2A 0.39 TCGA-D8-A1JS-01 7 91793911 91793911 T C LRRD1 Silent p.S202S 0.43 TCGA-D8-A1JS-01 7 93633635 93633635 C A BET1 5'UTR 0.48 TCGA-D8-A1JS-01 8 116632193 116632193 A - TRPS1 Frame_Shift_Del p.G45Efs*23 0.07 TCGA-D8-A1JS-01 8 23174487 23174487 G A LOXL2 Silent p.Y537Y 0.48 TCGA-D8-A1JS-01 8 56698879 56698879 C A TGS1 Missense_Mutation p.S141Y 0.52 deleterious(0.03) benign(0.048) TCGA-D8-A1JS-01 X 19764522 19764522 T C SH3KBP1 Missense_Mutation p.N67S 0.43 tolerated(0.91) benign(0.029) TCGA-D8-A1JS-01 X 69521827 69521827 G A KIF4A Silent p.R198R 0.40 TCGA-D8-A1JT-01 10 8115711 8115711 C - GATA3 Frame_Shift_Del p.L355* 0.29 TCGA-D8-A1JT-01 11 104825700 104825700 C G CASP4 Missense_Mutation p.K12N 0.43 tolerated(0.05) benign(0.158) TCGA-D8-A1JT-01 12 125448967 125448967 C T DHX37 Missense_Mutation p.G673E 0.43 deleterious(0) probably_damaging(1) TCGA-D8-A1JT-01 12 48919779 48919779 G A OR8S1 Missense_Mutation p.R122H 0.25 tolerated(0.08) benign(0.069) TCGA-D8-A1JT-01 13 20237220 20237220 C T MPHOSPH8 Missense_Mutation p.A658V 0.17 deleterious(0.05) probably_damaging(1) TCGA-D8-A1JT-01 14 21109350 21109350 C A OR6S1 Missense_Mutation p.L167F 0.50 deleterious(0.05) probably_damaging(0.932) TCGA-D8-A1JT-01 14 26939694 26939694 C T NOVA1 Intron 0.23 TCGA-D8-A1JT-01 15 101115307 101115307 A T LINS Silent p.A172A 0.40 TCGA-D8-A1JT-01 15 64915230 64915230 G C ZNF609 Missense_Mutation p.V318L 0.29 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JT-01 15 78775776 78775776 G A IREB2 Silent p.K471K 0.37 TCGA-D8-A1JT-01 17 20768693 20768693 A G CCDC144NL 3'UTR 0.40 TCGA-D8-A1JT-01 17 26901258 26901258 A G ALDOC Missense_Mutation p.V209A 0.29 deleterious(0.02) probably_damaging(0.92) TCGA-D8-A1JT-01 17 27064381 27064381 C T NEK8 Missense_Mutation p.R226W 0.20 deleterious(0) possibly_damaging(0.846) TCGA-D8-A1JT-01 17 61662631 61662631 G A DCAF7 Missense_Mutation p.R66Q 0.27 tolerated(0.52) possibly_damaging(0.487) TCGA-D8-A1JT-01 18 6889931 6889931 A G ARHGAP28 Silent p.K368K 0.11 TCGA-D8-A1JT-01 19 2396645 2396645 C T TMPRSS9 Missense_Mutation p.T84M 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JT-01 19 58131801 58131801 C T ZNF134 Missense_Mutation p.P105L 0.07 tolerated(0.3) benign(0.005) TCGA-D8-A1JT-01 19 9085003 9085003 G A MUC16 Missense_Mutation p.T2271I 0.31 unknown(0) TCGA-D8-A1JT-01 1 120457940 120457940 C T NOTCH2 Missense_Mutation p.V2469I 0.54 tolerated(0.16) benign(0.025) TCGA-D8-A1JT-01 1 181764068 181764068 G A CACNA1E Silent p.S2032S 0.05 TCGA-D8-A1JT-01 1 196621079 196621079 G T CFH 5'UTR 0.65 TCGA-D8-A1JT-01 1 197128400 197128404 AAGAA - ZBTB41 3'UTR 0.56 TCGA-D8-A1JT-01 1 202249911 202249911 A T LGR6 Missense_Mutation p.H216L 0.69 deleterious(0) probably_damaging(1) TCGA-D8-A1JT-01 1 237608772 237608772 C G RYR2 Silent p.R414R 0.14 TCGA-D8-A1JT-01 20 3640448 3640448 G A GFRA4 3'Flank 0.29 TCGA-D8-A1JT-01 21 43767728 43767728 G A TFF2 Silent p.C81C 0.37 TCGA-D8-A1JT-01 2 36583699 36583699 G C CRIM1 Silent p.L88L 0.50 TCGA-D8-A1JT-01 3 124438238 124438238 G A RP11-71H17.7 5'Flank 0.58 TCGA-D8-A1JT-01 4 103718541 103718541 T C UBE2D3 3'UTR 0.22 TCGA-D8-A1JT-01 4 175897708 175897708 G A ADAM29 Silent p.E344E 0.66 TCGA-D8-A1JT-01 4 187629455 187629455 C T FAT1 Silent p.P509P 0.21 TCGA-D8-A1JT-01 5 140798223 140798223 C A PCDHGB7 Missense_Mutation p.A266D 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A1JT-01 5 57750566 57750568 GAT - PLK2 In_Frame_Del p.I634del 0.23 TCGA-D8-A1JT-01 5 99871633 99871633 C G FAM174A Silent p.G133G 0.55 TCGA-D8-A1JT-01 6 137322542 137322542 C A IL20RA 3'UTR 0.40 TCGA-D8-A1JT-01 7 122342439 122342439 C A RNF148 Missense_Mutation p.K122N 0.39 tolerated(0.1) possibly_damaging(0.864) TCGA-D8-A1JT-01 7 151843775 151843776 TT - KMT2C Frame_Shift_Del p.K4647Vfs*2 0.42 TCGA-D8-A1JT-01 7 71142235 71142235 G A WBSCR17 Missense_Mutation p.G482R 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1JT-01 7 99998835 99998835 T A ZCWPW1 Silent p.S583S 0.33 TCGA-D8-A1JT-01 8 134232962 134232962 C T WISP1 Missense_Mutation p.P163L 0.82 deleterious(0.02) probably_damaging(0.971) TCGA-D8-A1JT-01 8 67578573 67578573 A C VCPIP1 Missense_Mutation p.C207W 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-D8-A1JT-01 9 123593673 123593673 T C PSMD5 Missense_Mutation p.N166S 0.33 tolerated(0.54) benign(0.007) TCGA-D8-A1JT-01 9 123930557 123930557 G A CNTRL Missense_Mutation p.E2010K 0.63 benign(0.016) TCGA-D8-A1JT-01 9 26988692 26988692 C T IFT74 Missense_Mutation p.T164I 0.41 tolerated(0.06) benign(0.039) TCGA-D8-A1JT-01 X 82764246 82764246 C T POU3F4 Missense_Mutation p.A305V 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A1JU-01 11 7324289 7324289 G A SYT9 Silent p.L55L 0.17 TCGA-D8-A1JU-01 12 113307785 113307785 G A RPH3A Missense_Mutation p.R246Q 0.15 tolerated(0.55) benign(0.005) TCGA-D8-A1JU-01 13 77748601 77748601 G A MYCBP2 Silent p.R1794R 0.22 TCGA-D8-A1JU-01 15 23437911 23437911 T C GOLGA8EP RNA 0.34 TCGA-D8-A1JU-01 16 26147094 26147094 C G HS3ST4 Missense_Mutation p.T299R 0.20 deleterious(0) probably_damaging(1) TCGA-D8-A1JU-01 19 52327162 52327162 G A FPR3 Missense_Mutation p.R54Q 0.05 tolerated(0.11) benign(0.377) TCGA-D8-A1JU-01 1 182554852 182554852 A G RNASEL Missense_Mutation p.F364L 0.11 tolerated(0.09) benign(0.022) TCGA-D8-A1JU-01 1 185985219 185985219 T C HMCN1 Missense_Mutation p.V1680A 0.19 benign(0.423) TCGA-D8-A1JU-01 1 203743056 203743056 A T LAX1 Silent p.T148T 0.35 TCGA-D8-A1JU-01 2 21233395 21233395 C T APOB Silent p.L2115L 0.20 TCGA-D8-A1JU-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.15 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A1JU-01 4 83971138 83971138 G A COPS4 Splice_Site p.X137_splice 0.13 TCGA-D8-A1JU-01 5 140181951 140181951 C T PCDHA3 Missense_Mutation p.T390M 0.07 tolerated_low_confidence(0.1) benign(0.364) TCGA-D8-A1JU-01 5 140784341 140784341 C T PCDHGA9 Silent p.L608L 0.50 TCGA-D8-A1JU-01 5 31515296 31515296 A T DROSHA Silent p.A363A 0.05 TCGA-D8-A1JU-01 5 56155725 56155726 AG - MAP3K1 Frame_Shift_Del p.R273Sfs*27 0.29 TCGA-D8-A1JU-01 8 119936777 119936777 C T TNFRSF11B Missense_Mutation p.A348T 0.25 tolerated(0.06) benign(0.237) TCGA-D8-A1JU-01 X 24828028 24828028 C T POLA1 Missense_Mutation p.T987M 0.09 deleterious(0) probably_damaging(0.999) TCGA-D8-A1JU-01 X 3002630 3002630 C T ARSF Silent p.H251H 0.10 TCGA-D8-A1JU-01 X 34962644 34962644 C A FAM47B Missense_Mutation p.P566T 0.20 tolerated(0.06) probably_damaging(0.975) TCGA-D8-A1JU-01 X 77243966 77243966 A G ATP7A Missense_Mutation p.K117E 0.06 tolerated(0.16) benign(0.103) TCGA-D8-A1X5-01 11 12278474 12278474 C G MICAL2 Missense_Mutation p.A1033G 0.10 tolerated(0.56) benign(0.063) TCGA-D8-A1X5-01 11 130781614 130781614 T C SNX19 Missense_Mutation p.Y576C 0.48 deleterious(0.02) possibly_damaging(0.491) TCGA-D8-A1X5-01 11 26620415 26620415 G A ANO3 Missense_Mutation p.R514H 0.14 deleterious(0) probably_damaging(0.997) TCGA-D8-A1X5-01 11 60184021 60184021 C T MS4A14 Missense_Mutation p.S560F 0.17 deleterious(0) possibly_damaging(0.825) TCGA-D8-A1X5-01 11 61094351 61094351 C T DDB1 Silent p.R188R 0.31 TCGA-D8-A1X5-01 11 6232928 6232928 G A FAM160A2 Silent p.G923G 0.32 TCGA-D8-A1X5-01 12 16115830 16115830 G T DERA Nonsense_Mutation p.E153* 0.18 TCGA-D8-A1X5-01 12 71833865 71833865 A C LGR5 Missense_Mutation p.D2A 0.25 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D8-A1X5-01 12 7252292 7252292 C A C1RL Missense_Mutation p.Q227H 0.15 tolerated(0.23) benign(0.003) TCGA-D8-A1X5-01 12 95415991 95415991 T G NR2C1 3'UTR 0.10 TCGA-D8-A1X5-01 14 73572703 73572703 C T RBM25 Missense_Mutation p.R431W 0.09 unknown(0) TCGA-D8-A1X5-01 16 15221952 15221952 C T RP11-1186N24.5 RNA 0.15 TCGA-D8-A1X5-01 16 67405086 67405086 G A LRRC36 Missense_Mutation p.D479N 0.20 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-D8-A1X5-01 17 10216033 10216033 G A MYH13 Missense_Mutation p.T1408M 0.28 tolerated(0.18) benign(0.015) TCGA-D8-A1X5-01 17 35687261 35687261 C T ACACA Missense_Mutation p.D64N 0.13 tolerated_low_confidence(0.33) benign(0.443) TCGA-D8-A1X5-01 17 35687301 35687301 C G ACACA Silent p.L50L 0.16 TCGA-D8-A1X5-01 17 49354509 49354509 C T UTP18 Missense_Mutation p.P286S 0.23 deleterious(0.02) possibly_damaging(0.873) TCGA-D8-A1X5-01 17 49354526 49354526 C G UTP18 Missense_Mutation p.I291M 0.23 deleterious(0) possibly_damaging(0.723) TCGA-D8-A1X5-01 17 49354547 49354547 C G UTP18 Missense_Mutation p.I298M 0.24 deleterious(0) possibly_damaging(0.659) TCGA-D8-A1X5-01 17 73520470 73520470 T C TSEN54 Silent p.L520L 0.15 TCGA-D8-A1X5-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.54 deleterious(0) probably_damaging(1) TCGA-D8-A1X5-01 18 66354926 66354926 G T TMX3 Silent p.L238L 0.29 TCGA-D8-A1X5-01 19 18188415 18188415 G T IL12RB1 Missense_Mutation p.Q154K 0.14 tolerated(0.13) benign(0.017) TCGA-D8-A1X5-01 19 42583484 42583484 C T ZNF574 Silent p.P242P 0.24 TCGA-D8-A1X5-01 19 44778658 44778658 G A ZNF233 Silent p.T615T 0.21 TCGA-D8-A1X5-01 19 49547303 49547303 G A CGB5 5'UTR 0.13 TCGA-D8-A1X5-01 1 151018589 151018589 C A BNIPL Missense_Mutation p.L329M 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1X5-01 1 216246478 216246479 - T USH2A Frame_Shift_Ins p.E1913Rfs*24 0.35 TCGA-D8-A1X5-01 1 238051727 238051727 C A ZP4 Nonsense_Mutation p.G162* 0.14 TCGA-D8-A1X5-01 1 240256746 240256746 G A FMN2 Missense_Mutation p.R446Q 0.17 unknown(0) TCGA-D8-A1X5-01 20 61834989 61834989 G A YTHDF1 Silent p.H101H 0.20 TCGA-D8-A1X5-01 22 36055202 36055202 G A APOL6 Silent p.L197L 0.19 TCGA-D8-A1X5-01 2 119600587 119600587 G A EN1 Missense_Mutation p.A369V 0.31 deleterious(0) probably_damaging(0.998) TCGA-D8-A1X5-01 2 210560612 210560612 G T MAP2 Nonsense_Mutation p.E1240* 0.20 TCGA-D8-A1X5-01 2 21234906 21234906 A G APOB Missense_Mutation p.F1612L 0.22 benign(0.07) TCGA-D8-A1X5-01 2 28775833 28775833 C T PLB1 Silent p.D374D 0.16 TCGA-D8-A1X5-01 2 40656069 40656069 G T SLC8A1 Missense_Mutation p.A451E 0.22 deleterious(0) probably_damaging(1) TCGA-D8-A1X5-01 2 43453434 43453434 G A ZFP36L2 Silent p.S7S 0.33 TCGA-D8-A1X5-01 2 97498311 97498311 C T CNNM3 Silent p.G694G 0.24 TCGA-D8-A1X5-01 3 182897874 182897874 C A MCF2L2 Missense_Mutation p.E1030D 0.08 tolerated(0.43) benign(0.004) TCGA-D8-A1X5-01 3 197427964 197427964 T C KIAA0226 Missense_Mutation p.S261G 0.14 tolerated(0.21) benign(0.001) TCGA-D8-A1X5-01 3 43596874 43596874 C A ANO10 Missense_Mutation p.A522S 0.44 deleterious(0.04) probably_damaging(0.993) TCGA-D8-A1X5-01 3 49168209 49168209 G A LAMB2 Missense_Mutation p.R334C 0.23 deleterious(0) possibly_damaging(0.883) TCGA-D8-A1X5-01 3 52109949 52109949 T G POC1A Missense_Mutation p.Q393P 0.45 deleterious(0) benign(0.078) TCGA-D8-A1X5-01 4 187077211 187077211 C T FAM149A Silent p.L147L 0.15 TCGA-D8-A1X5-01 4 53264 53264 C A ZNF595 5'UTR 0.04 TCGA-D8-A1X5-01 5 40959618 40959618 A G C7 Silent p.R519R 0.53 TCGA-D8-A1X5-01 5 71492990 71492991 - C MAP1B Frame_Shift_Ins p.L1272Pfs*3 0.53 TCGA-D8-A1X5-01 6 101847171 101847171 G A GRIK2 Silent p.P6P 0.13 TCGA-D8-A1X5-01 6 112015900 112015900 T C FYN Silent p.L350L 0.42 TCGA-D8-A1X5-01 6 13977923 13977923 G T RNF182 Missense_Mutation p.L191F 0.24 tolerated(0.48) benign(0.169) TCGA-D8-A1X5-01 6 28269126 28269126 G A PGBD1 Missense_Mutation p.E499K 0.24 deleterious(0.04) possibly_damaging(0.862) TCGA-D8-A1X5-01 6 36922584 36922584 A G PI16 Silent p.L16L 0.22 TCGA-D8-A1X5-01 6 7582932 7582932 G C DSP Missense_Mutation p.E1813Q 0.44 probably_damaging(0.993) TCGA-D8-A1X5-01 6 76551053 76551054 - TA MYO6 Frame_Shift_Ins p.I259* 0.23 TCGA-D8-A1X5-01 7 100656116 100656116 T C MUC12 Silent p.Y5140Y 0.13 TCGA-D8-A1X5-01 7 100656123 100656123 G T MUC12 Nonsense_Mutation p.E5143* 0.13 TCGA-D8-A1X5-01 7 117432213 117432213 C A CTTNBP2 Missense_Mutation p.C346F 0.26 tolerated(0.05) possibly_damaging(0.498) TCGA-D8-A1X5-01 7 30795418 30795418 C A INMT Missense_Mutation p.A248D 0.41 tolerated(0.91) benign(0.079) TCGA-D8-A1X5-01 8 139856380 139856380 C T COL22A1 Missense_Mutation p.R227H 0.17 unknown(0) TCGA-D8-A1X5-01 8 74235310 74235310 G A RDH10 3'UTR 0.21 TCGA-D8-A1X5-01 8 92365190 92365191 - A SLC26A7 Frame_Shift_Ins p.Y430Ifs*6 0.13 TCGA-D8-A1X5-01 9 136405814 136405814 A G ADAMTSL2 Silent p.T169T 0.52 TCGA-D8-A1X5-01 9 21207102 21207102 T A IFNA10 5'UTR 0.43 TCGA-D8-A1X5-01 9 35295823 35295823 G A UNC13B Silent p.P219P 0.64 TCGA-D8-A1X5-01 9 5988477 5988477 C A KIAA2026 Missense_Mutation p.G221V 0.14 deleterious(0) probably_damaging(0.994) TCGA-D8-A1X5-01 9 94486308 94486308 C G ROR2 Missense_Mutation p.G823A 0.39 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D8-A1X5-01 X 103080689 103080689 T G RAB9B Missense_Mutation p.K9T 0.33 deleterious(0) probably_damaging(1) TCGA-D8-A1X5-01 X 123196791 123196791 A T STAG2 Missense_Mutation p.R560W 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-D8-A1X5-01 X 18638042 18638042 G T CDKL5 Nonsense_Mutation p.G778* 0.22 TCGA-D8-A1X6-01 10 121674317 121674317 G A SEC23IP Missense_Mutation p.S463N 0.37 tolerated(0.05) probably_damaging(0.998) TCGA-D8-A1X6-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.29 TCGA-D8-A1X6-01 11 46419045 46419045 G A AMBRA1 Silent p.S1194S 0.22 TCGA-D8-A1X6-01 12 104495851 104495851 G C HCFC2 Missense_Mutation p.G662R 0.37 deleterious(0) benign(0.443) TCGA-D8-A1X6-01 12 115118782 115118782 G A TBX3 Missense_Mutation p.H187Y 0.38 deleterious(0) probably_damaging(1) TCGA-D8-A1X6-01 12 54426887 54426887 T A HOXC5 5'UTR 0.45 TCGA-D8-A1X6-01 12 54902260 54902260 C T NCKAP1L Missense_Mutation p.R151W 0.19 deleterious(0) probably_damaging(0.999) TCGA-D8-A1X6-01 12 57894289 57894289 A T MARS Missense_Mutation p.N426I 0.46 deleterious(0) probably_damaging(0.985) TCGA-D8-A1X6-01 12 88496844 88496844 C T CEP290 Intron 0.56 TCGA-D8-A1X6-01 13 29608146 29608146 G A MTUS2 Missense_Mutation p.R787H 0.47 deleterious(0) probably_damaging(0.999) TCGA-D8-A1X6-01 14 29237628 29237628 C T FOXG1 Silent p.A381A 0.55 TCGA-D8-A1X6-01 14 58737668 58737668 T A PSMA3 Missense_Mutation p.H225Q 0.34 deleterious(0) probably_damaging(0.929) TCGA-D8-A1X6-01 15 49420113 49420113 T A COPS2 3'UTR 0.06 TCGA-D8-A1X6-01 15 52879367 52879367 G A FAM214A Missense_Mutation p.P953L 0.35 deleterious(0.01) possibly_damaging(0.676) TCGA-D8-A1X6-01 15 79058631 79058631 G T ADAMTS7 Missense_Mutation p.P1208T 0.48 tolerated(0.29) benign(0.011) TCGA-D8-A1X6-01 16 12155386 12155386 C G SNX29 Missense_Mutation p.P376A 0.21 deleterious_low_confidence(0.05) benign(0.013) TCGA-D8-A1X6-01 17 37761947 37761948 - G NEUROD2 Frame_Shift_Ins p.L303Afs*80 0.28 TCGA-D8-A1X6-01 18 28714069 28714069 C T DSC1 Missense_Mutation p.R634Q 0.41 tolerated(0.71) benign(0.046) TCGA-D8-A1X6-01 19 40883954 40883954 G A PLD3 Silent p.T449T 0.54 TCGA-D8-A1X6-01 1 158654984 158654984 G A SPTA1 Nonsense_Mutation p.R60* 0.39 TCGA-D8-A1X6-01 1 159828685 159828685 G A VSIG8 Missense_Mutation p.R23W 0.40 deleterious(0) probably_damaging(1) TCGA-D8-A1X6-01 1 43282112 43282112 T C CCDC23 Missense_Mutation p.Q35R 0.39 deleterious(0.01) possibly_damaging(0.556) TCGA-D8-A1X6-01 1 55589159 55589159 G A USP24 Missense_Mutation p.L1413F 0.37 tolerated(0.13) possibly_damaging(0.8) TCGA-D8-A1X6-01 2 109300418 109300418 G T LIMS1 Missense_Mutation p.R376I 0.21 tolerated(0.06) unknown(0) TCGA-D8-A1X6-01 2 178098009 178098009 G C NFE2L2 Missense_Mutation p.A124G 0.43 deleterious(0.03) possibly_damaging(0.906) TCGA-D8-A1X6-01 2 234680995 234680995 T C UGT1A4 Silent p.F465F 0.48 TCGA-D8-A1X6-01 3 115439676 115439676 C T GAP43 Missense_Mutation p.R258W 0.40 deleterious(0) probably_damaging(0.925) TCGA-D8-A1X6-01 3 11596413 11596413 G A ATG7 3'UTR 0.46 TCGA-D8-A1X6-01 3 157289743 157289743 G T C3orf55 Splice_Site p.X72_splice 0.41 TCGA-D8-A1X6-01 3 20167590 20167590 G A KAT2B Missense_Mutation p.R536Q 0.47 tolerated(0.23) probably_damaging(0.964) TCGA-D8-A1X6-01 3 63981414 63981414 G C ATXN7 Missense_Mutation p.C639S 0.36 tolerated(0.43) benign(0.02) TCGA-D8-A1X6-01 4 122735146 122735146 T C EXOSC9 Missense_Mutation p.I367T 0.40 tolerated_low_confidence(0.98) benign(0.002) TCGA-D8-A1X6-01 5 140250403 140250403 C T PCDHA11 Missense_Mutation p.A572V 0.10 tolerated_low_confidence(0.2) benign(0.009) TCGA-D8-A1X6-01 5 140712120 140712120 G A PCDHGA1 Silent p.T623T 0.07 TCGA-D8-A1X6-01 5 56160679 56160680 - A MAP3K1 Frame_Shift_Ins p.L319Tfs*7 0.45 TCGA-D8-A1X6-01 5 56170972 56170973 - GA MAP3K1 Frame_Shift_Ins p.S602Rfs*55 0.09 TCGA-D8-A1X6-01 6 138752045 138752045 C - NHSL1 Frame_Shift_Del p.S1150Ifs*15 0.37 TCGA-D8-A1X6-01 6 150290259 150290259 G A ULBP1 Missense_Mutation p.E130K 0.09 tolerated(0.32) benign(0.024) TCGA-D8-A1X6-01 6 30864469 30864469 G A DDR1 Missense_Mutation p.V566I 0.11 tolerated(0.06) probably_damaging(0.98) TCGA-D8-A1X6-01 7 100244424 100244424 C G ACTL6B Missense_Mutation p.G323R 0.29 tolerated(0.07) possibly_damaging(0.839) TCGA-D8-A1X6-01 7 151841851 151841852 - CC KMT2C Frame_Shift_Ins p.K4764Gfs*3 0.31 TCGA-D8-A1X6-01 8 86572313 86572313 G C REXO1L1P 3'UTR 0.20 TCGA-D8-A1X6-01 9 136568235 136568235 T C SARDH Intron 0.21 TCGA-D8-A1X6-01 9 136918532 136918532 G A BRD3 Missense_Mutation p.P23L 0.68 deleterious(0.02) possibly_damaging(0.766) TCGA-D8-A1X6-01 9 140395220 140395220 G A PNPLA7 Silent p.T560T 0.33 TCGA-D8-A1X6-01 9 6805599 6805599 G C KDM4C Missense_Mutation p.V49L 0.53 deleterious(0) benign(0.087) TCGA-D8-A1X6-01 X 30872398 30872398 C T TAB3 Missense_Mutation p.A462T 0.26 tolerated(0.2) benign(0.003) TCGA-D8-A1X6-01 X 99662740 99662740 G A PCDH19 Missense_Mutation p.R286C 0.50 deleterious(0) probably_damaging(0.977) TCGA-D8-A1X7-01 11 58478234 58478234 C T GLYAT Missense_Mutation p.S106N 0.09 tolerated(0.1) probably_damaging(0.98) TCGA-D8-A1X7-01 12 102053566 102053566 C T MYBPC1 Silent p.N603N 0.39 TCGA-D8-A1X7-01 12 1702880 1702880 G A FBXL14 Missense_Mutation p.S118F 0.30 deleterious(0.01) possibly_damaging(0.474) TCGA-D8-A1X7-01 12 88496844 88496844 C T CEP290 Intron 0.56 TCGA-D8-A1X7-01 13 103397200 103397200 G C LINC00283 RNA 0.30 TCGA-D8-A1X7-01 15 65495782 65495782 C A CILP Nonsense_Mutation p.E316* 0.14 TCGA-D8-A1X7-01 16 1756526 1756526 G T MAPK8IP3 Silent p.V62V 0.10 TCGA-D8-A1X7-01 17 18565506 18565506 G C ZNF286B Missense_Mutation p.P438R 0.72 deleterious(0) probably_damaging(1) TCGA-D8-A1X7-01 17 41955101 41955101 T G MPP2 3'UTR 0.50 TCGA-D8-A1X7-01 17 73235514 73235514 C T GGA3 Silent p.P574P 0.08 TCGA-D8-A1X7-01 19 12954345 12954345 C T MAST1 Missense_Mutation p.A84V 0.49 tolerated(0.09) benign(0.34) TCGA-D8-A1X7-01 19 18375974 18375974 G T KIAA1683 Missense_Mutation p.S792R 0.31 tolerated(0.11) probably_damaging(0.914) TCGA-D8-A1X7-01 1 12711145 12711145 A T AADACL4 Missense_Mutation p.N58Y 0.31 tolerated(0.15) possibly_damaging(0.66) TCGA-D8-A1X7-01 1 197390372 197390372 C T CRB1 Missense_Mutation p.P472S 0.07 tolerated(0.6) possibly_damaging(0.609) TCGA-D8-A1X7-01 1 20027295 20027295 C T TMCO4 Missense_Mutation p.V450M 0.36 deleterious(0) probably_damaging(0.981) TCGA-D8-A1X7-01 1 233344320 233344320 T C PCNXL2 Missense_Mutation p.Y936C 0.18 deleterious(0) probably_damaging(0.984) TCGA-D8-A1X7-01 20 50408674 50408674 G A SALL4 Silent p.S116S 0.30 TCGA-D8-A1X7-01 2 103311569 103311569 A G SLC9A2 Missense_Mutation p.D528G 0.44 deleterious(0) possibly_damaging(0.744) TCGA-D8-A1X7-01 2 149501311 149501311 G A EPC2 Missense_Mutation p.R145K 0.19 deleterious(0) possibly_damaging(0.672) TCGA-D8-A1X7-01 2 220476737 220476737 A T STK11IP Missense_Mutation p.E810V 0.29 deleterious(0) probably_damaging(0.994) TCGA-D8-A1X7-01 2 26707384 26707384 G A OTOF Missense_Mutation p.T388M 0.40 deleterious(0.05) possibly_damaging(0.627) TCGA-D8-A1X7-01 2 61468772 61468772 G A USP34 Silent p.L2234L 0.40 TCGA-D8-A1X7-01 7 48068584 48068584 G T SUN3 5'UTR 0.13 TCGA-D8-A1X7-01 7 72849875 72849875 A T FZD9 Missense_Mutation p.K513I 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A1X7-01 8 104831624 104831624 G A RIMS2 Intron 0.25 TCGA-D8-A1X7-01 8 144358528 144358528 C G GLI4 Missense_Mutation p.H229D 0.23 deleterious(0) probably_damaging(0.999) TCGA-D8-A1X7-01 9 111673326 111673326 G C IKBKAP Missense_Mutation p.L442V 0.20 tolerated(0.14) possibly_damaging(0.838) TCGA-D8-A1X7-01 9 131115797 131115797 G A SLC27A4 Missense_Mutation p.G434D 0.35 deleterious(0) probably_damaging(1) TCGA-D8-A1X7-01 9 317062 317062 G A DOCK8 Missense_Mutation p.R254H 0.36 tolerated(0.18) possibly_damaging(0.874) TCGA-D8-A1X7-01 X 119005594 119005594 C A RNF113A 5'UTR 0.21 TCGA-D8-A1X7-01 X 152159057 152159057 G A PNMA5 Silent p.V362V 0.39 TCGA-D8-A1X7-01 X 41025387 41025387 C T USP9X Nonsense_Mutation p.R750* 0.34 TCGA-D8-A1X9-01 10 112581284 112581284 A C RBM20 Silent p.V969V 0.55 TCGA-D8-A1X9-01 10 3181120 3181120 C T PITRM1 Missense_Mutation p.A966T 0.25 deleterious(0.03) benign(0.025) TCGA-D8-A1X9-01 10 74769591 74769591 C A P4HA1 Missense_Mutation p.C503F 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A1X9-01 11 16007910 16007910 C T SOX6 Missense_Mutation p.A655T 0.45 deleterious(0) possibly_damaging(0.863) TCGA-D8-A1X9-01 11 46726161 46726161 A T ZNF408 Missense_Mutation p.Y304F 0.42 tolerated(0.65) benign(0.002) TCGA-D8-A1X9-01 11 6190716 6190716 G T OR52B2 Missense_Mutation p.L281I 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-D8-A1X9-01 11 63420031 63420031 A T ATL3 Missense_Mutation p.M141K 0.30 deleterious(0) possibly_damaging(0.815) TCGA-D8-A1X9-01 12 117014080 117014080 G T MAP1LC3B2 Missense_Mutation p.M111I 0.17 tolerated(0.19) benign(0.051) TCGA-D8-A1X9-01 12 126138566 126138566 C G TMEM132B Silent p.T849T 0.25 TCGA-D8-A1X9-01 12 50745684 50745684 G C FAM186A Missense_Mutation p.A1644G 0.24 deleterious(0.01) benign(0.227) TCGA-D8-A1X9-01 14 102843158 102843158 A - TECPR2 Frame_Shift_Del p.I34Sfs*34 0.36 TCGA-D8-A1X9-01 14 105412985 105412985 G A AHNAK2 Missense_Mutation p.P2935S 0.43 benign(0.162) TCGA-D8-A1X9-01 14 39818099 39818099 T A CTAGE5 Silent p.P727P 0.22 TCGA-D8-A1X9-01 14 75748073 75748073 C T FOS Silent p.S363S 0.50 TCGA-D8-A1X9-01 14 93119023 93119023 G T RIN3 Missense_Mutation p.M543I 0.36 tolerated(0.6) benign(0.002) TCGA-D8-A1X9-01 15 49059319 49059319 T A CEP152 Nonsense_Mutation p.K740* 0.35 TCGA-D8-A1X9-01 15 49059320 49059320 C A CEP152 Missense_Mutation p.E739D 0.35 deleterious(0.05) probably_damaging(0.998) TCGA-D8-A1X9-01 15 83451590 83451590 G T FSD2 Missense_Mutation p.T308K 0.24 deleterious(0.01) possibly_damaging(0.703) TCGA-D8-A1X9-01 15 89860668 89860668 G A POLG Silent p.T1194T 0.09 TCGA-D8-A1X9-01 15 91769862 91769862 G T SV2B Silent p.G123G 0.33 TCGA-D8-A1X9-01 16 30997512 30997512 G A AC135048.1 Missense_Mutation p.L8F 0.25 possibly_damaging(0.773) TCGA-D8-A1X9-01 16 31121625 31121625 G A BCKDK Missense_Mutation p.E175K 0.17 deleterious(0.01) probably_damaging(0.952) TCGA-D8-A1X9-01 16 70162893 70162893 C G PDPR Missense_Mutation p.P159A 0.25 tolerated(0.07) benign(0.14) TCGA-D8-A1X9-01 16 88773618 88773618 G T CTU2 Missense_Mutation p.R48M 0.50 deleterious(0) possibly_damaging(0.501) TCGA-D8-A1X9-01 17 18498077 18498077 C G CCDC144B RNA 0.84 TCGA-D8-A1X9-01 17 30349516 30349516 C T LRRC37B Missense_Mutation p.L451F 0.38 tolerated(0.26) benign(0.429) TCGA-D8-A1X9-01 17 36521265 36521265 C A SOCS7 Missense_Mutation p.P345T 0.07 deleterious_low_confidence(0.04) benign(0.155) TCGA-D8-A1X9-01 17 65548392 65548392 A T PITPNC1 Nonsense_Mutation p.R73* 0.45 TCGA-D8-A1X9-01 17 72338053 72338053 C A KIF19 Missense_Mutation p.D53E 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-D8-A1X9-01 17 72842316 72842316 T G GRIN2C Missense_Mutation p.T747P 0.50 deleterious(0) probably_damaging(0.998) TCGA-D8-A1X9-01 17 78113839 78113839 T A EIF4A3 Missense_Mutation p.H158L 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1X9-01 17 79220110 79220110 C T SLC38A10 Missense_Mutation p.G869D 0.20 tolerated(0.31) benign(0.089) TCGA-D8-A1X9-01 18 29488954 29488954 A C TRAPPC8 Missense_Mutation p.F295L 0.28 tolerated(0.87) benign(0.001) TCGA-D8-A1X9-01 18 48604754 48604754 G T SMAD4 Nonsense_Mutation p.E526* 0.45 TCGA-D8-A1X9-01 18 6961582 6961582 C A LAMA1 Intron 0.61 TCGA-D8-A1X9-01 19 14910104 14910104 G T OR7C1 Missense_Mutation p.T282N 0.43 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D8-A1X9-01 19 18897364 18897364 G A COMP Missense_Mutation p.P411L 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A1X9-01 19 31039360 31039360 C T ZNF536 Missense_Mutation p.P945L 0.31 tolerated(0.48) benign(0) TCGA-D8-A1X9-01 19 36243216 36243216 G C LIN37 Intron 0.32 TCGA-D8-A1X9-01 19 39038978 39038978 T A RYR1 Missense_Mutation p.L4067H 0.24 benign(0.192) TCGA-D8-A1X9-01 19 42355733 42355733 G T DMRTC2 Missense_Mutation p.G358V 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A1X9-01 19 53209483 53209483 T A ZNF611 Silent p.A275A 0.67 TCGA-D8-A1X9-01 1 150240461 150240461 G T APH1A Silent p.T60T 0.37 TCGA-D8-A1X9-01 1 153915527 153915527 G T DENND4B Missense_Mutation p.L133M 0.32 deleterious(0) probably_damaging(0.997) TCGA-D8-A1X9-01 1 156287325 156287325 A C CCT3 Missense_Mutation p.I258S 0.41 deleterious(0) possibly_damaging(0.561) TCGA-D8-A1X9-01 1 158368836 158368836 G A OR10T2 Silent p.L141L 0.42 TCGA-D8-A1X9-01 1 158639531 158639531 C A SPTA1 Missense_Mutation p.D549Y 0.28 deleterious(0.04) probably_damaging(1) TCGA-D8-A1X9-01 1 171251333 171251333 C A FMO1 Silent p.G348G 0.32 TCGA-D8-A1X9-01 1 240072278 240072278 C A CHRM3 Silent p.I509I 0.16 TCGA-D8-A1X9-01 1 243419510 243419510 A G SDCCAG8 Missense_Mutation p.E12G 0.39 deleterious(0) possibly_damaging(0.853) TCGA-D8-A1X9-01 1 8421833 8421833 G C RERE Missense_Mutation p.T669R 0.20 possibly_damaging(0.761) TCGA-D8-A1X9-01 20 51870893 51870893 A T TSHZ2 Missense_Mutation p.H299L 0.26 deleterious(0) probably_damaging(0.999) TCGA-D8-A1X9-01 22 20074049 20074049 T G DGCR8 Missense_Mutation p.L188R 0.48 tolerated(0.21) benign(0.282) TCGA-D8-A1X9-01 22 46657363 46657363 G T PKDREJ Silent p.T619T 0.40 TCGA-D8-A1X9-01 2 136579592 136579592 T A LCT Missense_Mutation p.K328N 0.32 tolerated(0.43) benign(0.035) TCGA-D8-A1X9-01 2 170557587 170557587 C T PHOSPHO2 Missense_Mutation p.R36C 0.38 deleterious(0) possibly_damaging(0.606) TCGA-D8-A1X9-01 2 8874805 8874805 A G KIDINS220 Missense_Mutation p.W1266R 0.36 deleterious(0) probably_damaging(0.999) TCGA-D8-A1X9-01 2 89459492 89459492 A C IGKV6-21 Missense_Mutation p.F29V 0.40 tolerated(0.11) benign(0.065) TCGA-D8-A1X9-01 2 99013589 99013589 C T CNGA3 Silent p.N652N 0.69 TCGA-D8-A1X9-01 3 128199857 128199857 G T GATA2 3'UTR 0.27 TCGA-D8-A1X9-01 3 138186958 138186958 G A ESYT3 Silent p.L410L 0.32 TCGA-D8-A1X9-01 3 140401895 140401895 C G TRIM42 Silent p.T311T 0.32 TCGA-D8-A1X9-01 3 141678678 141678678 C G TFDP2 Missense_Mutation p.E297Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-D8-A1X9-01 3 180334625 180334625 C A CCDC39 Missense_Mutation p.V799L 0.39 deleterious(0.03) benign(0.335) TCGA-D8-A1X9-01 3 37091999 37091999 C A MLH1 Missense_Mutation p.P709Q 0.34 tolerated(0.4) benign(0.035) TCGA-D8-A1X9-01 3 40192594 40192594 A C MYRIP Missense_Mutation p.K130Q 0.37 deleterious(0.02) possibly_damaging(0.517) TCGA-D8-A1X9-01 3 42699991 42699991 G C ZBTB47 Missense_Mutation p.Q48H 0.42 deleterious(0.04) benign(0.064) TCGA-D8-A1X9-01 3 49054678 49054678 T G DALRD3 Missense_Mutation p.K304Q 0.21 tolerated(0.91) benign(0.001) TCGA-D8-A1X9-01 3 52821620 52821620 C A ITIH1 Missense_Mutation p.P639H 0.32 tolerated(0.17) benign(0.005) TCGA-D8-A1X9-01 3 53269083 53269083 A T TKT Missense_Mutation p.L190Q 0.47 deleterious(0) probably_damaging(0.988) TCGA-D8-A1X9-01 3 71026978 71026978 C A FOXP1 Splice_Site p.X452_splice 0.41 TCGA-D8-A1X9-01 4 70346546 70346546 C A UGT2B4 Nonsense_Mutation p.E465* 0.37 TCGA-D8-A1X9-01 4 88535974 88535974 T C DSPP Silent p.N720N 0.38 TCGA-D8-A1X9-01 5 132534782 132534782 G A FSTL4 3'UTR 0.27 TCGA-D8-A1X9-01 5 137289986 137289986 C G FAM13B Missense_Mutation p.M507I 0.28 deleterious(0.04) probably_damaging(0.968) TCGA-D8-A1X9-01 5 150508981 150508981 T C ANXA6 Missense_Mutation p.Y302C 0.23 deleterious(0.02) possibly_damaging(0.893) TCGA-D8-A1X9-01 5 179070490 179070505 ATCTGGAAAGCAGGAG - C5orf60 Splice_Site p.X94_splice 0.45 TCGA-D8-A1X9-01 5 24593446 24593446 G T CDH10 Missense_Mutation p.Q52K 0.41 tolerated(0.36) benign(0.026) TCGA-D8-A1X9-01 6 105224704 105224704 C A HACE1 Splice_Site p.X593_splice 0.74 TCGA-D8-A1X9-01 6 112395935 112395935 C A TUBE1 Missense_Mutation p.D311Y 0.44 deleterious(0) probably_damaging(0.987) TCGA-D8-A1X9-01 6 41196189 41196189 C A TREML4 Silent p.T8T 0.30 TCGA-D8-A1X9-01 6 99842022 99842022 C A COQ3 Missense_Mutation p.G12C 0.41 tolerated_low_confidence(0.15) possibly_damaging(0.533) TCGA-D8-A1X9-01 7 107834872 107834872 C T NRCAM Nonsense_Mutation p.W488* 0.40 TCGA-D8-A1X9-01 7 21641142 21641142 C T DNAH11 Missense_Mutation p.A1185V 0.19 benign(0.046) TCGA-D8-A1X9-01 7 27578011 27578011 A G HIBADH Missense_Mutation p.L215P 0.62 deleterious(0) probably_damaging(0.997) TCGA-D8-A1X9-01 7 29440430 29440430 A G CHN2 Missense_Mutation p.T188A 0.25 tolerated(0.75) benign(0) TCGA-D8-A1X9-01 7 42079679 42079679 G T GLI3 Nonsense_Mutation p.S329* 0.19 TCGA-D8-A1X9-01 7 44735647 44735647 G C OGDH Missense_Mutation p.K564N 0.61 tolerated(0.27) possibly_damaging(0.765) TCGA-D8-A1X9-01 7 84628938 84628938 G T SEMA3D Missense_Mutation p.Q718K 0.18 deleterious(0.03) benign(0.256) TCGA-D8-A1X9-01 7 87031379 87031379 G C ABCB4 3'UTR 0.17 TCGA-D8-A1X9-01 7 94057753 94057753 C T COL1A2 Silent p.H1225H 0.21 TCGA-D8-A1X9-01 7 99693398 99693398 G A MCM7 Missense_Mutation p.R532W 0.20 deleterious(0) probably_damaging(0.998) TCGA-D8-A1X9-01 8 145111540 145111540 C T OPLAH Missense_Mutation p.G609R 0.33 tolerated(0.53) benign(0.001) TCGA-D8-A1X9-01 8 96059285 96059285 C T NDUFAF6 Missense_Mutation p.T215I 0.24 deleterious(0) possibly_damaging(0.887) TCGA-D8-A1X9-01 8 96059287 96059287 T G NDUFAF6 Missense_Mutation p.C216G 0.24 deleterious(0.01) possibly_damaging(0.661) TCGA-D8-A1X9-01 9 131898874 131898885 GGTACTAGAGCG - PPP2R4 Splice_Site p.X229_splice 0.62 TCGA-D8-A1X9-01 9 35870156 35870156 C A OR13J1 Missense_Mutation p.M81I 0.32 tolerated(0.28) probably_damaging(0.958) TCGA-D8-A1X9-01 9 71080089 71080089 G A PGM5 Missense_Mutation p.R375H 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-D8-A1X9-01 X 100629586 100629586 T C BTK Missense_Mutation p.K60E 0.46 deleterious(0) possibly_damaging(0.895) TCGA-D8-A1X9-01 X 10092351 10092351 G A WWC3 Missense_Mutation p.G600R 0.47 tolerated(0.2) benign(0.096) TCGA-D8-A1X9-01 X 154133268 154133268 A C F8 Missense_Mutation p.Y1802D 0.15 deleterious(0) probably_damaging(0.996) TCGA-D8-A1X9-01 X 17743644 17743644 C A NHS Missense_Mutation p.A452E 0.39 deleterious(0) possibly_damaging(0.886) TCGA-D8-A1X9-01 X 40456905 40456905 A G ATP6AP2 Missense_Mutation p.R175G 0.11 tolerated(0.11) benign(0.004) TCGA-D8-A1X9-01 X 49459370 49459370 C T PAGE1 Missense_Mutation p.G2S 0.20 tolerated_low_confidence(1) probably_damaging(0.982) TCGA-D8-A1X9-01 X 53965560 53965560 T C PHF8 3'UTR 0.34 TCGA-D8-A1XA-01 10 135340911 135340911 C T CYP2E1 Silent p.L4L 0.67 TCGA-D8-A1XA-01 10 5042749 5042749 G A AKR1C2 Missense_Mutation p.S121F 0.39 tolerated(0.06) probably_damaging(0.997) TCGA-D8-A1XA-01 10 50916662 50916662 G T C10orf53 Nonstop_Mutation p.*158Lext*24 0.39 TCGA-D8-A1XA-01 11 129827675 129827675 G A PRDM10 Missense_Mutation p.T67M 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1XA-01 11 308323 308323 T C IFITM2 Missense_Mutation p.V44A 0.42 deleterious(0.01) possibly_damaging(0.895) TCGA-D8-A1XA-01 11 5462323 5462323 T C OR51I1 Missense_Mutation p.N141S 0.60 tolerated(1) benign(0.005) TCGA-D8-A1XA-01 11 55541596 55541596 T G OR5D13 Missense_Mutation p.M228R 0.44 deleterious(0.01) benign(0.01) TCGA-D8-A1XA-01 11 61135442 61135442 T C TMEM138 Silent p.L116L 0.48 TCGA-D8-A1XA-01 12 51203349 51203349 A G ATF1 Missense_Mutation p.Y102C 0.45 deleterious(0) benign(0.009) TCGA-D8-A1XA-01 16 28898983 28898983 C A ATP2A1 Missense_Mutation p.R290S 0.32 deleterious(0.04) benign(0.419) TCGA-D8-A1XA-01 16 84050246 84050246 C T SLC38A8 Missense_Mutation p.R347Q 0.23 deleterious(0.02) probably_damaging(0.972) TCGA-D8-A1XA-01 17 41123700 41123700 G A PTGES3L Missense_Mutation p.S106F 0.39 deleterious(0.05) benign(0.137) TCGA-D8-A1XA-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.82 TCGA-D8-A1XA-01 19 9272088 9272088 C T ZNF317 Silent p.S589S 0.31 TCGA-D8-A1XA-01 1 153964620 153964620 G T RPS27 3'UTR 0.38 TCGA-D8-A1XA-01 20 43927067 43927067 G A MATN4 Missense_Mutation p.S390L 0.29 probably_damaging(0.999) TCGA-D8-A1XA-01 22 39918079 39918082 TTCC - ATF4 Frame_Shift_Del p.S177Lfs*3 0.79 TCGA-D8-A1XA-01 22 50217426 50217426 G A BRD1 Silent p.A180A 0.25 TCGA-D8-A1XA-01 2 39519955 39519955 T C MAP4K3 Silent p.A410A 0.72 TCGA-D8-A1XA-01 3 195956806 195956806 T G SLC51A Silent p.A218A 0.43 TCGA-D8-A1XA-01 3 50327172 50327172 C A IFRD2 Missense_Mutation p.G254C 0.49 tolerated(1) benign(0.042) TCGA-D8-A1XA-01 4 68374632 68374632 C T CENPC Missense_Mutation p.G602S 0.37 tolerated(0.65) benign(0.134) TCGA-D8-A1XA-01 5 131080327 131080343 CAGTCTTGATATACAAT - FNIP1 Frame_Shift_Del p.I45* 0.84 TCGA-D8-A1XA-01 5 56183240 56183241 - T MAP3K1 Frame_Shift_Ins p.R1385Kfs*35 0.51 TCGA-D8-A1XA-01 5 81571904 81571904 C G RPS23 3'UTR 0.06 TCGA-D8-A1XA-01 7 24789354 24789354 C A DFNA5 Missense_Mutation p.D14Y 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A1XA-01 7 44161698 44161698 A G POLD2 5'UTR 0.50 TCGA-D8-A1XA-01 7 98581879 98581907 TATTCCAACTGTTCCTATCGTGGATTGCT - TRRAP Frame_Shift_Del p.I3067Pfs*8 0.41 TCGA-D8-A1XA-01 8 1645363 1645363 G A DLGAP2 Nonsense_Mutation p.W869* 0.45 TCGA-D8-A1XA-01 8 75932129 75932130 CA - CRISPLD1 Frame_Shift_Del p.T385Sfs*3 0.34 TCGA-D8-A1XA-01 9 103947755 103947755 G T LPPR1 5'UTR 0.70 TCGA-D8-A1XA-01 X 73960664 73960664 C T KIAA2022 Missense_Mutation p.R1243H 0.69 tolerated_low_confidence(0.19) benign(0.006) TCGA-D8-A1XA-01 X 9841726 9841726 A G SHROOM2 Missense_Mutation p.K67R 0.62 tolerated(0.1) probably_damaging(0.945) TCGA-D8-A1XB-01 10 104486446 104486446 G A SFXN2 Missense_Mutation p.R18H 0.06 deleterious(0) benign(0.116) TCGA-D8-A1XB-01 10 23482876 23482876 G T PTF1A 3'UTR 0.38 TCGA-D8-A1XB-01 11 123624563 123624563 C T OR6X1 Missense_Mutation p.A222T 0.36 tolerated(1) benign(0.007) TCGA-D8-A1XB-01 12 63061084 63061084 T C PPM1H Missense_Mutation p.Y424C 0.32 tolerated(0.06) benign(0.018) TCGA-D8-A1XB-01 12 8288271 8288271 G A CLEC4A Missense_Mutation p.S130N 0.28 deleterious(0) probably_damaging(0.984) TCGA-D8-A1XB-01 13 29608201 29608201 C T MTUS2 Silent p.S805S 0.06 TCGA-D8-A1XB-01 14 96851896 96851896 T A GSKIP Missense_Mutation p.L99I 0.26 tolerated(0.2) benign(0.003) TCGA-D8-A1XB-01 15 41372096 41372096 G A INO80 Missense_Mutation p.H312Y 0.26 tolerated(0.85) benign(0.267) TCGA-D8-A1XB-01 16 1576011 1576011 G A IFT140 Missense_Mutation p.A882V 0.18 deleterious(0.02) benign(0.03) TCGA-D8-A1XB-01 16 1889430 1889430 A G MEIOB Silent p.C348C 0.33 TCGA-D8-A1XB-01 16 50139074 50139074 T A HEATR3 3'UTR 0.24 TCGA-D8-A1XB-01 17 74734448 74734448 C G MFSD11 Missense_Mutation p.S5C 0.15 deleterious(0.05) possibly_damaging(0.682) TCGA-D8-A1XB-01 18 44634957 44634957 G T HDHD2 3'UTR 0.39 TCGA-D8-A1XB-01 19 1235064 1235064 G A C19orf26 Missense_Mutation p.R131W 0.25 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XB-01 19 19218751 19218751 G T SLC25A42 Silent p.G182G 0.33 TCGA-D8-A1XB-01 19 37130642 37130642 C T ZNF461 Missense_Mutation p.S202N 0.27 tolerated(0.43) benign(0.007) TCGA-D8-A1XB-01 19 44610662 44610662 T C ZNF224 Silent p.L117L 0.10 TCGA-D8-A1XB-01 19 44831587 44831587 C A ZNF112 Nonstop_Mutation p.*914Lext*17 0.09 TCGA-D8-A1XB-01 1 153965255 153965255 C T NUP210L 3'UTR 0.55 TCGA-D8-A1XB-01 1 158609755 158609755 C T SPTA1 Missense_Mutation p.E1594K 0.06 tolerated(0.38) benign(0.052) TCGA-D8-A1XB-01 1 171549015 171549015 G A PRRC2C Missense_Mutation p.G2439R 0.60 probably_damaging(0.992) TCGA-D8-A1XB-01 1 201861163 201861163 G A SHISA4 3'UTR 0.09 TCGA-D8-A1XB-01 1 202987620 202987620 C T TMEM183A Silent p.F240F 0.07 TCGA-D8-A1XB-01 1 247835571 247835571 C T OR13G1 Missense_Mutation p.R258H 0.52 tolerated(0.24) benign(0.111) TCGA-D8-A1XB-01 1 86942180 86942180 C T CLCA1 Silent p.D167D 0.08 TCGA-D8-A1XB-01 20 44638517 44638517 C T MMP9 Missense_Mutation p.R51C 0.07 deleterious(0) probably_damaging(0.981) TCGA-D8-A1XB-01 20 45839483 45839483 G A ZMYND8 Missense_Mutation p.R1164C 0.03 tolerated_low_confidence(0.22) benign(0.006) TCGA-D8-A1XB-01 21 37833546 37833546 G C CLDN14 Missense_Mutation p.P150A 0.28 deleterious(0) probably_damaging(1) TCGA-D8-A1XB-01 22 20024370 20024370 G A TANGO2 Missense_Mutation p.A17T 0.19 deleterious(0.03) possibly_damaging(0.804) TCGA-D8-A1XB-01 2 159481627 159481627 T G PKP4 Missense_Mutation p.S281A 0.17 deleterious(0.05) benign(0.008) TCGA-D8-A1XB-01 2 27294263 27294265 ACG - OST4 In_Frame_Del p.V23del 0.41 TCGA-D8-A1XB-01 3 149374905 149374905 G C WWTR1 Silent p.R63R 0.24 TCGA-D8-A1XB-01 3 154859894 154859894 A G MME Missense_Mutation p.I358V 0.07 tolerated(0.35) benign(0.004) TCGA-D8-A1XB-01 3 178916926 178916937 GTAGGCAACCGT - PIK3CA In_Frame_Del p.V105_R108del 0.33 TCGA-D8-A1XB-01 3 36759619 36759619 G A DCLK3 Silent p.I545I 0.24 TCGA-D8-A1XB-01 3 39230480 39230480 C T XIRP1 Missense_Mutation p.V153I 0.10 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XB-01 3 42777253 42777253 C T CCDC13 Silent p.E439E 0.22 TCGA-D8-A1XB-01 3 48613682 48613682 C T COL7A1 Silent p.P1940P 0.08 TCGA-D8-A1XB-01 4 128811154 128811154 T - PLK4 Frame_Shift_Del p.D532Ifs*6 0.19 TCGA-D8-A1XB-01 4 160265200 160265200 G A RAPGEF2 Nonsense_Mutation p.W928* 0.10 TCGA-D8-A1XB-01 4 167022091 167022091 A T TLL1 3'UTR 0.17 TCGA-D8-A1XB-01 4 175649752 175649752 A T GLRA3 Missense_Mutation p.M122K 0.29 deleterious(0) possibly_damaging(0.858) TCGA-D8-A1XB-01 4 186318102 186318102 G A ANKRD37 Missense_Mutation p.E9K 0.18 tolerated(0.08) possibly_damaging(0.756) TCGA-D8-A1XB-01 5 179079250 179079250 A G AC136604.1 Missense_Mutation p.K245E 0.29 tolerated(0.22) benign(0) TCGA-D8-A1XB-01 5 56177099 56177099 G T MAP3K1 Missense_Mutation p.R790M 0.31 deleterious(0.05) probably_damaging(0.991) TCGA-D8-A1XB-01 5 56179396 56179396 T A MAP3K1 Missense_Mutation p.Y1237N 0.35 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XB-01 6 121526246 121526246 C T TBC1D32 Missense_Mutation p.E849K 0.20 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XB-01 6 160174524 160174524 G C WTAP Missense_Mutation p.R162P 0.36 deleterious(0) probably_damaging(1) TCGA-D8-A1XB-01 X 115585541 115585541 T C SLC6A14 Missense_Mutation p.M446T 0.26 tolerated(0.24) benign(0.351) TCGA-D8-A1XB-01 X 119738004 119738004 C T MCTS1 5'Flank 0.22 TCGA-D8-A1XB-01 X 138811070 138811070 C T ATP11C 3'UTR 0.09 TCGA-D8-A1XB-01 X 48839811 48839811 C T GRIPAP1 Missense_Mutation p.M438I 0.19 benign(0.001) TCGA-D8-A1XB-01 X 70823575 70823575 G A ACRC Missense_Mutation p.D150N 0.04 unknown(0) TCGA-D8-A1XC-01 11 112064318 112064318 C T BCO2 Nonsense_Mutation p.R139* 0.43 TCGA-D8-A1XC-01 11 59225033 59225033 C A OR4D6 Silent p.I200I 0.41 TCGA-D8-A1XC-01 11 86267631 86267631 G A ME3 Missense_Mutation p.A144V 0.41 deleterious(0.01) possibly_damaging(0.884) TCGA-D8-A1XC-01 12 12630318 12630318 G A DUSP16 Nonsense_Mutation p.R483* 0.14 TCGA-D8-A1XC-01 12 53825208 53825208 G A AMHR2 Missense_Mutation p.G558D 0.36 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-D8-A1XC-01 14 38060755 38060762 GCTGCTCC - FOXA1 Frame_Shift_Del p.E410Afs*2 0.37 TCGA-D8-A1XC-01 14 77767530 77767530 A G POMT2 Missense_Mutation p.L240S 0.39 deleterious(0) benign(0.371) TCGA-D8-A1XC-01 16 28844531 28844531 C T ATXN2L Missense_Mutation p.S604L 0.24 tolerated(0.16) benign(0.001) TCGA-D8-A1XC-01 17 60678053 60678053 A G TLK2 Missense_Mutation p.D531G 0.37 deleterious(0) probably_damaging(0.969) TCGA-D8-A1XC-01 18 20516761 20516761 C T RBBP8 5'UTR 0.21 TCGA-D8-A1XC-01 18 44057735 44057735 G A LOXHD1 Silent p.V1063V 0.38 TCGA-D8-A1XC-01 19 31768399 31768399 G A TSHZ3 Missense_Mutation p.P767L 0.46 deleterious(0) probably_damaging(0.913) TCGA-D8-A1XC-01 19 9066614 9066614 C A MUC16 Missense_Mutation p.E6944D 0.33 unknown(0) TCGA-D8-A1XC-01 1 179063271 179063271 C T TOR3A Missense_Mutation p.L288F 0.25 deleterious(0) probably_damaging(0.964) TCGA-D8-A1XC-01 1 196716457 196716457 G T CFH 3'UTR 0.29 TCGA-D8-A1XC-01 20 20036596 20036596 T A CRNKL1 Missense_Mutation p.K21N 0.44 deleterious_low_confidence(0) benign(0) TCGA-D8-A1XC-01 20 31315779 31315779 G A COMMD7 Silent p.L54L 0.29 TCGA-D8-A1XC-01 20 61981023 61981023 G A CHRNA4 Silent p.A580A 0.31 TCGA-D8-A1XC-01 20 62187465 62187465 G A C20orf195 Missense_Mutation p.R150Q 0.53 tolerated(0.59) benign(0.005) TCGA-D8-A1XC-01 22 28503613 28503613 T C TTC28 Silent p.Q740Q 0.09 TCGA-D8-A1XC-01 2 128389268 128389268 C T MYO7B Missense_Mutation p.P1704L 0.19 deleterious(0.03) benign(0.001) TCGA-D8-A1XC-01 2 166012326 166012326 G C SCN3A Missense_Mutation p.F373L 0.12 deleterious(0.01) probably_damaging(0.943) TCGA-D8-A1XC-01 2 179742731 179742731 G A CCDC141 Missense_Mutation p.T620I 0.38 tolerated(0.16) benign(0.127) TCGA-D8-A1XC-01 2 207508978 207508978 C G AC010731.4 RNA 0.68 TCGA-D8-A1XC-01 3 164755728 164755728 T C SI Missense_Mutation p.I796V 0.53 tolerated(0.16) benign(0.057) TCGA-D8-A1XC-01 4 134073305 134073305 C T PCDH10 Silent p.S670S 0.38 TCGA-D8-A1XC-01 4 40245027 40245027 C T RHOH Silent p.C7C 0.49 TCGA-D8-A1XC-01 5 162891728 162891728 G A HMMR Splice_Site p.X49_splice 0.39 TCGA-D8-A1XC-01 5 44813385 44813385 G A MRPS30 Splice_Site p.X344_splice 0.60 TCGA-D8-A1XC-01 5 7835571 7835571 C T C5orf49 Missense_Mutation p.R63H 0.52 tolerated(0.15) benign(0.372) TCGA-D8-A1XC-01 6 137147511 137147511 T G PEX7 Missense_Mutation p.H81Q 0.22 deleterious(0.04) possibly_damaging(0.756) TCGA-D8-A1XC-01 7 21516732 21516732 C A SP4 Missense_Mutation p.Q572K 0.56 tolerated(0.17) benign(0.016) TCGA-D8-A1XC-01 7 31912927 31912927 T G PDE1C Missense_Mutation p.Y256S 0.41 deleterious(0.01) benign(0.092) TCGA-D8-A1XC-01 7 40027851 40027851 C T CDK13 Missense_Mutation p.A622V 0.50 tolerated(0.42) benign(0.138) TCGA-D8-A1XC-01 X 70627446 70627446 G A TAF1 Missense_Mutation p.R1397Q 0.29 deleterious(0) benign(0.304) TCGA-D8-A1XF-01 10 103897671 103897671 T A PPRC1 Missense_Mutation p.L73Q 0.43 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-D8-A1XF-01 10 12178154 12178154 C T SEC61A2 Silent p.F42F 0.13 TCGA-D8-A1XF-01 10 70156614 70156614 C T RUFY2 Silent p.A142A 0.31 TCGA-D8-A1XF-01 11 123598959 123598959 C T ZNF202 Silent p.T238T 0.39 TCGA-D8-A1XF-01 11 49831377 49831377 C T RP11-707M1.1 RNA 0.29 TCGA-D8-A1XF-01 11 66457401 66457401 C T SPTBN2 Missense_Mutation p.A1942T 0.83 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XF-01 11 73785378 73785378 G A C2CD3 Missense_Mutation p.T1624M 0.10 deleterious(0.05) benign(0.053) TCGA-D8-A1XF-01 12 40153634 40153634 T G SLC2A13 3'UTR 0.25 TCGA-D8-A1XF-01 12 49918671 49918671 C T SPATS2 Missense_Mutation p.L440F 0.16 tolerated(0.49) benign(0.008) TCGA-D8-A1XF-01 12 76791544 76791544 C T OSBPL8 Missense_Mutation p.R201H 0.26 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XF-01 13 113898800 113898800 G C CUL4A Missense_Mutation p.K435N 0.46 deleterious(0) possibly_damaging(0.555) TCGA-D8-A1XF-01 14 22237104 22237104 A C TRAV6 Missense_Mutation p.T61P 0.26 deleterious(0) possibly_damaging(0.759) TCGA-D8-A1XF-01 15 53957929 53957929 C T WDR72 Missense_Mutation p.R601Q 0.47 tolerated(0.21) benign(0.008) TCGA-D8-A1XF-01 15 72050319 72050319 G T THSD4 Nonsense_Mutation p.E832* 0.29 TCGA-D8-A1XF-01 16 29851675 29851675 C A MVP Silent p.P362P 0.27 TCGA-D8-A1XF-01 16 57921789 57921789 C T CNGB1 Silent p.A1144A 0.59 TCGA-D8-A1XF-01 17 34050880 34050880 G A AP2B1 3'UTR 0.38 TCGA-D8-A1XF-01 18 32397938 32397938 C G DTNA Intron 0.27 TCGA-D8-A1XF-01 18 44559184 44559184 C A TCEB3B 3'UTR 0.29 TCGA-D8-A1XF-01 18 52928751 52928751 G A TCF4 Silent p.S414S 0.26 TCGA-D8-A1XF-01 19 20828055 20828056 - A ZNF626 Intron 0.30 TCGA-D8-A1XF-01 19 39077216 39077222 GGTAAGG - RYR1 Splice_Site p.X5007_splice 0.37 TCGA-D8-A1XF-01 19 41596463 41596463 G A CYP2A13 Silent p.T216T 0.23 TCGA-D8-A1XF-01 19 51584934 51584934 T C KLK14 Missense_Mutation p.N39D 0.30 tolerated(0.2) benign(0.003) TCGA-D8-A1XF-01 19 9058138 9058138 C T MUC16 Missense_Mutation p.E9770K 0.21 unknown(0) TCGA-D8-A1XF-01 1 152192762 152192762 C T HRNR Missense_Mutation p.R448Q 0.20 unknown(0) TCGA-D8-A1XF-01 1 152193765 152193765 C T HRNR Missense_Mutation p.E114K 0.19 possibly_damaging(0.826) TCGA-D8-A1XF-01 1 152278000 152278000 C A FLG Missense_Mutation p.R3121M 0.13 unknown(0) TCGA-D8-A1XF-01 1 158687927 158687927 A - OR6K3 5'Flank 0.50 TCGA-D8-A1XF-01 1 203452389 203452389 C A PRELP Missense_Mutation p.P26Q 0.20 deleterious_low_confidence(0.03) benign(0.177) TCGA-D8-A1XF-01 1 206906070 206906070 G A MAPKAPK2 3'UTR 0.20 TCGA-D8-A1XF-01 1 247587581 247587581 G T NLRP3 Missense_Mutation p.C279F 0.29 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XF-01 1 248902892 248902892 C A LYPD8 3'UTR 0.21 TCGA-D8-A1XF-01 1 39908479 39908479 G A MACF1 Missense_Mutation p.A4341T 0.36 probably_damaging(0.991) TCGA-D8-A1XF-01 1 45241248 45241248 C G RPS8 5'UTR 0.75 TCGA-D8-A1XF-01 20 45228668 45228668 G C SLC13A3 Missense_Mutation p.R184G 0.24 tolerated(0.25) benign(0.009) TCGA-D8-A1XF-01 22 29727809 29727809 C T AP1B1 Silent p.S802S 0.33 TCGA-D8-A1XF-01 22 38823442 38823442 G A KCNJ4 Silent p.G232G 0.30 TCGA-D8-A1XF-01 2 204291989 204291989 G A ABI2 Missense_Mutation p.D448N 0.89 deleterious(0) probably_damaging(1) TCGA-D8-A1XF-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.85 TCGA-D8-A1XF-01 2 228564073 228564073 C T SLC19A3 Missense_Mutation p.E120K 1.00 deleterious(0) probably_damaging(0.937) TCGA-D8-A1XF-01 2 33952673 33952673 C T AC009499.1 Intron 0.23 TCGA-D8-A1XF-01 3 123451949 123451949 A C MYLK Missense_Mutation p.V437G 0.22 deleterious(0) benign(0.156) TCGA-D8-A1XF-01 3 42754739 42754739 C T CCDC13 Silent p.V596V 0.38 TCGA-D8-A1XF-01 3 51263178 51263178 C A DOCK3 Missense_Mutation p.L451I 0.28 deleterious(0.04) benign(0.143) TCGA-D8-A1XF-01 4 118005644 118005644 C A TRAM1L1 Silent p.S302S 0.21 TCGA-D8-A1XF-01 4 174449778 174449778 G A HAND2 Intron 0.14 TCGA-D8-A1XF-01 5 112173496 112173496 G A APC Silent p.A735A 0.58 TCGA-D8-A1XF-01 5 34909405 34909405 T C RAD1 Missense_Mutation p.D208G 0.30 deleterious(0.03) probably_damaging(0.976) TCGA-D8-A1XF-01 6 153292154 153292154 T - FBXO5 3'UTR 0.41 TCGA-D8-A1XF-01 6 24581158 24581158 C A KIAA0319 Missense_Mutation p.K425N 0.23 tolerated(0.36) possibly_damaging(0.618) TCGA-D8-A1XF-01 7 94928251 94928251 G C PON1 3'UTR 0.38 TCGA-D8-A1XF-01 8 13356703 13356703 C T DLC1 Missense_Mutation p.G293D 0.84 tolerated_low_confidence(0.35) benign(0.002) TCGA-D8-A1XF-01 8 77764795 77764795 A G ZFHX4 Missense_Mutation p.K1880E 0.47 possibly_damaging(0.486) TCGA-D8-A1XF-01 9 26905474 26905474 A G PLAA 3'UTR 0.40 TCGA-D8-A1XG-01 10 127734625 127734625 C T ADAM12 Missense_Mutation p.G668E 0.34 deleterious(0) probably_damaging(1) TCGA-D8-A1XG-01 11 31653874 31653874 G C ELP4 Missense_Mutation p.K283N 0.46 deleterious(0.02) benign(0.219) TCGA-D8-A1XG-01 11 63071594 63071594 C T SLC22A10 Missense_Mutation p.R434C 0.17 tolerated(0.06) benign(0.431) TCGA-D8-A1XG-01 11 67166579 67166579 T A PPP1CA Silent p.T204T 0.44 TCGA-D8-A1XG-01 14 38061884 38061890 GTTCATG - FOXA1 Frame_Shift_Del p.M34Qfs*6 0.56 TCGA-D8-A1XG-01 14 74995708 74995708 C T LTBP2 Missense_Mutation p.G702D 0.33 deleterious(0) probably_damaging(0.943) TCGA-D8-A1XG-01 14 91338369 91338369 T C RPS6KA5 3'UTR 0.34 TCGA-D8-A1XG-01 15 33356985 33356985 G C FMN1 Intron 0.29 TCGA-D8-A1XG-01 16 27353480 27353480 G A IL4R Missense_Mutation p.D37N 0.09 tolerated(0.07) possibly_damaging(0.769) TCGA-D8-A1XG-01 19 40316721 40316721 T G DYRK1B Silent p.P508P 0.46 TCGA-D8-A1XG-01 19 52633836 52633836 T C ZNF616 5'UTR 0.43 TCGA-D8-A1XG-01 19 6711025 6711025 C A C3 Missense_Mutation p.E484D 0.12 tolerated(0.52) benign(0.008) TCGA-D8-A1XG-01 20 35689643 35689643 C T RBL1 Silent p.L371L 0.42 TCGA-D8-A1XG-01 2 107423302 107423302 G A ST6GAL2 Silent p.D474D 0.27 TCGA-D8-A1XG-01 2 198351864 198351873 TCTGCTGTAG - HSPD1 Frame_Shift_Del p.T540Kfs*3 0.60 TCGA-D8-A1XG-01 2 97302834 97302834 T C KANSL3 Silent p.S13S 0.37 TCGA-D8-A1XG-01 3 10370591 10370591 G A ATP2B2 Silent p.I1213I 0.40 TCGA-D8-A1XG-01 3 111632438 111632438 G T PHLDB2 Missense_Mutation p.R536S 0.30 tolerated(0.07) benign(0.036) TCGA-D8-A1XG-01 3 122645475 122645475 G T SEMA5B Missense_Mutation p.F354L 0.42 tolerated(0.34) benign(0.113) TCGA-D8-A1XG-01 4 140454468 140454468 T A SETD7 Missense_Mutation p.T75S 0.59 tolerated(0.06) possibly_damaging(0.479) TCGA-D8-A1XG-01 4 184240759 184240759 G T CLDN22 Missense_Mutation p.Q205K 0.69 tolerated(0.2) benign(0.094) TCGA-D8-A1XG-01 5 127597566 127597566 C T FBN2 Silent p.G2742G 0.48 TCGA-D8-A1XG-01 5 148709274 148709274 C T AFAP1L1 Missense_Mutation p.A619V 0.39 tolerated(0.12) probably_damaging(0.966) TCGA-D8-A1XG-01 5 150443171 150443171 T C TNIP1 Intron 0.32 TCGA-D8-A1XG-01 5 94619756 94619756 C A MCTP1 Missense_Mutation p.R175M 0.47 tolerated_low_confidence(0.19) benign(0.068) TCGA-D8-A1XG-01 7 82595138 82595227 CTGTGGCTGTTCTTTTATTGTTTTGGTTGTCTTATCATCTTCTTTAGGTAAACTCTGAGGTGTGCCAGATGGTAAACCTTCCATCTTGGT - PCLO In_Frame_Del p.T1293_Q1322del 0.13 TCGA-D8-A1XG-01 8 104940067 104940067 C G RIMS2 Intron 0.09 TCGA-D8-A1XG-01 8 42177326 42177326 G T IKBKB Intron 0.41 TCGA-D8-A1XG-01 8 90970950 90970950 T C NBN Intron 0.08 TCGA-D8-A1XG-01 8 99217462 99217463 AC - NIPAL2 Frame_Shift_Del p.V223Yfs*17 0.39 TCGA-D8-A1XG-01 9 131707952 131707952 C T DOLK 3'UTR 0.42 TCGA-D8-A1XK-01 10 101486835 101486835 G T COX15 Missense_Mutation p.L158I 0.35 tolerated(0.33) benign(0.008) TCGA-D8-A1XK-01 10 101572815 101572815 A G ABCC2 Missense_Mutation p.I670V 0.39 tolerated(1) benign(0) TCGA-D8-A1XK-01 10 101596043 101596043 A T ABCC2 Missense_Mutation p.N1204Y 0.08 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 10 102684177 102684177 A G FAM178A Silent p.L473L 0.13 TCGA-D8-A1XK-01 10 103907142 103907142 T C PPRC1 Missense_Mutation p.W1465R 0.24 tolerated_low_confidence(0.12) possibly_damaging(0.608) TCGA-D8-A1XK-01 10 104634356 104634356 T G AS3MT Missense_Mutation p.C156G 0.20 deleterious(0.01) possibly_damaging(0.651) TCGA-D8-A1XK-01 10 106163505 106163505 G A CCDC147 Missense_Mutation p.M686I 0.21 tolerated(0.32) benign(0.001) TCGA-D8-A1XK-01 10 108466377 108466377 G A SORCS1 Missense_Mutation p.R387W 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 10 112724562 112724562 T C SHOC2 Missense_Mutation p.M149T 0.09 tolerated(0.43) benign(0.03) TCGA-D8-A1XK-01 10 114205243 114205243 T C ZDHHC6 5'UTR 0.16 TCGA-D8-A1XK-01 10 114849235 114849235 A T TCF7L2 Intron 0.29 TCGA-D8-A1XK-01 10 1149703 1149703 T G WDR37 Silent p.A296A 0.24 TCGA-D8-A1XK-01 10 11505090 11505090 C G USP6NL Missense_Mutation p.A630P 0.10 tolerated_low_confidence(1) benign(0.002) TCGA-D8-A1XK-01 10 118435931 118435931 C T HSPA12A Missense_Mutation p.D457N 0.20 tolerated(0.17) benign(0.032) TCGA-D8-A1XK-01 10 121582587 121582587 T C INPP5F Silent p.P679P 0.25 TCGA-D8-A1XK-01 10 124753556 124753556 G C IKZF5 Missense_Mutation p.P334A 0.20 tolerated(0.84) benign(0) TCGA-D8-A1XK-01 10 125521487 125521487 G A CPXM2 Missense_Mutation p.R560C 0.27 tolerated(0.17) probably_damaging(0.956) TCGA-D8-A1XK-01 10 126682516 126682516 G A CTBP2 Silent p.G813G 0.34 TCGA-D8-A1XK-01 10 127522354 127522354 G A BCCIP Missense_Mutation p.G205R 0.30 tolerated(0.36) benign(0.003) TCGA-D8-A1XK-01 10 13231007 13231007 A C MCM10 Missense_Mutation p.S449R 0.25 deleterious(0.03) benign(0.013) TCGA-D8-A1XK-01 10 134158119 134158119 T C LRRC27 Missense_Mutation p.V173A 0.35 tolerated(0.93) benign(0.001) TCGA-D8-A1XK-01 10 135038192 135038192 A G KNDC1 Missense_Mutation p.H1683R 0.11 deleterious(0.01) benign(0.042) TCGA-D8-A1XK-01 10 15838114 15838114 T C FAM188A Missense_Mutation p.T314A 0.11 tolerated(0.29) benign(0.004) TCGA-D8-A1XK-01 10 17632264 17632264 A G PTPLA 3'UTR 0.20 TCGA-D8-A1XK-01 10 24722057 24722057 G T KIAA1217 Silent p.S229S 0.23 TCGA-D8-A1XK-01 10 25465221 25465221 G C GPR158 Missense_Mutation p.G291A 0.14 deleterious(0.01) probably_damaging(0.927) TCGA-D8-A1XK-01 10 27342247 27342247 A G ANKRD26 Splice_Site p.X545_splice 0.25 TCGA-D8-A1XK-01 10 27403447 27403447 T A YME1L1 Intron 0.31 TCGA-D8-A1XK-01 10 29839780 29839780 G A SVIL Silent p.D191D 0.38 TCGA-D8-A1XK-01 10 323385 323385 C A DIP2C Silent p.V1517V 0.08 TCGA-D8-A1XK-01 10 35318555 35318555 T A CUL2 Missense_Mutation p.Y486F 0.25 tolerated(0.06) benign(0.041) TCGA-D8-A1XK-01 10 395333 395333 A G DIP2C Missense_Mutation p.V1016A 0.19 tolerated(1) benign(0.001) TCGA-D8-A1XK-01 10 50668419 50668419 C A ERCC6 Missense_Mutation p.Q1354H 0.21 deleterious(0.01) possibly_damaging(0.827) TCGA-D8-A1XK-01 10 50732504 50732504 T C ERCC6-PGBD3 Silent p.K324K 0.17 TCGA-D8-A1XK-01 10 5149757 5149757 G A AKR1C3 3'UTR 0.23 TCGA-D8-A1XK-01 10 52502772 52502772 T C ASAH2B Splice_Site p.X29_splice 0.05 TCGA-D8-A1XK-01 10 53227498 53227498 T C PRKG1 Missense_Mutation p.V165A 0.34 deleterious(0) probably_damaging(0.989) TCGA-D8-A1XK-01 10 53667269 53667269 T C PRKG1 Missense_Mutation p.V234A 0.06 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 10 5772959 5772961 AAG - FAM208B In_Frame_Del p.K334del 0.16 TCGA-D8-A1XK-01 10 5788566 5788566 A G FAM208B Missense_Mutation p.H1061R 0.19 tolerated(0.19) benign(0.143) TCGA-D8-A1XK-01 10 5995062 5995062 A G IL15RA Missense_Mutation p.L267P 0.10 deleterious(0) probably_damaging(0.975) TCGA-D8-A1XK-01 10 61014181 61014181 A G FAM13C Missense_Mutation p.L420P 0.18 deleterious(0) benign(0.106) TCGA-D8-A1XK-01 10 61823945 61823946 - T ANK3 Frame_Shift_Ins p.W4141Mfs*12 0.26 TCGA-D8-A1XK-01 10 61832235 61832235 T C ANK3 Missense_Mutation p.N2802D 0.28 benign(0) TCGA-D8-A1XK-01 10 61832245 61832245 T C ANK3 Silent p.E2798E 0.30 TCGA-D8-A1XK-01 10 61842479 61842479 T A ANK3 Missense_Mutation p.Q1406L 0.29 probably_damaging(0.948) TCGA-D8-A1XK-01 10 70406058 70406058 T C TET1 Missense_Mutation p.I1191T 0.35 deleterious(0) possibly_damaging(0.548) TCGA-D8-A1XK-01 10 70641762 70641762 T C STOX1 Missense_Mutation p.V120A 0.26 deleterious(0.03) benign(0.284) TCGA-D8-A1XK-01 10 70652628 70652628 T A STOX1 3'UTR 0.23 TCGA-D8-A1XK-01 10 70673838 70673838 T C DDX50 Silent p.L323L 0.06 TCGA-D8-A1XK-01 10 70931038 70931038 A - VPS26A 3'UTR 0.25 TCGA-D8-A1XK-01 10 70946251 70946251 T G SUPV3L1 Silent p.S134S 0.24 TCGA-D8-A1XK-01 10 72520611 72520611 C T ADAMTS14 3'UTR 0.19 TCGA-D8-A1XK-01 10 72541685 72541685 T C TBATA Missense_Mutation p.E50G 0.14 deleterious(0.04) benign(0.007) TCGA-D8-A1XK-01 10 73472592 73472592 G T C10orf105 3'UTR 0.24 TCGA-D8-A1XK-01 10 75289458 75289458 A G USP54 Silent p.P680P 0.32 TCGA-D8-A1XK-01 10 75488206 75488208 TCT - RP11-464F9.1 RNA 0.28 TCGA-D8-A1XK-01 10 75552070 75552070 T G ZSWIM8 Silent p.A591A 0.40 TCGA-D8-A1XK-01 10 78651290 78651290 T C KCNMA1 Missense_Mutation p.D1095G 0.15 tolerated(0.2) possibly_damaging(0.548) TCGA-D8-A1XK-01 10 78704601 78704601 G C KCNMA1 Missense_Mutation p.I927M 0.13 deleterious(0) probably_damaging(0.934) TCGA-D8-A1XK-01 10 79767570 79767570 A C POLR3A Missense_Mutation p.L655R 0.18 deleterious(0) probably_damaging(0.972) TCGA-D8-A1XK-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.27 TCGA-D8-A1XK-01 10 91483862 91483862 T C KIF20B Splice_Site p.X621_splice 0.10 TCGA-D8-A1XK-01 10 93749167 93749167 A G BTAF1 Missense_Mutation p.N895S 0.11 tolerated(0.38) benign(0.005) TCGA-D8-A1XK-01 10 96271382 96271382 T C TBC1D12 Missense_Mutation p.Y578H 0.46 deleterious(0.01) probably_damaging(0.993) TCGA-D8-A1XK-01 11 102076658 102076658 G A YAP1 Silent p.V279V 0.62 TCGA-D8-A1XK-01 11 103036734 103036734 A T DYNC2H1 Missense_Mutation p.Q1573H 0.46 benign(0) TCGA-D8-A1XK-01 11 108380334 108380334 T A EXPH5 Missense_Mutation p.N1967I 0.10 deleterious(0) benign(0.002) TCGA-D8-A1XK-01 11 110134808 110134808 A G RDX Missense_Mutation p.I115T 0.43 deleterious(0) probably_damaging(0.921) TCGA-D8-A1XK-01 11 111904183 111904183 A - DLAT Frame_Shift_Del p.V242Wfs*5 0.26 TCGA-D8-A1XK-01 11 112119411 112119411 A T PLET1 3'UTR 0.32 TCGA-D8-A1XK-01 11 114441619 114441619 T - NXPE4 3'Flank 0.33 TCGA-D8-A1XK-01 11 118366575 118366575 A G KMT2A Missense_Mutation p.T1842A 0.35 benign(0.013) TCGA-D8-A1XK-01 11 118771770 118771770 A G BCL9L Silent p.P894P 0.13 TCGA-D8-A1XK-01 11 118899010 118899010 A G SLC37A4 Missense_Mutation p.I92T 0.44 deleterious(0) benign(0.315) TCGA-D8-A1XK-01 11 120998674 120998674 A C TECTA Missense_Mutation p.E663A 0.10 tolerated(0.11) benign(0.052) TCGA-D8-A1XK-01 11 121498428 121498428 T C SORL1 Missense_Mutation p.Y2177H 0.37 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 11 12281437 12281437 C - MICAL2 Frame_Shift_Del p.P1111Qfs*20 0.31 TCGA-D8-A1XK-01 11 16362658 16362658 A G SOX6 Missense_Mutation p.I46T 0.08 tolerated_low_confidence(0.16) benign(0.087) TCGA-D8-A1XK-01 11 16766217 16766217 A G C11orf58 Missense_Mutation p.M45V 0.23 deleterious(0) benign(0.269) TCGA-D8-A1XK-01 11 1858526 1858526 G A SYT8 Silent p.Q357Q 0.50 TCGA-D8-A1XK-01 11 19197491 19197491 T C ZDHHC13 Missense_Mutation p.V618A 0.31 tolerated_low_confidence(0.52) benign(0.002) TCGA-D8-A1XK-01 11 19246367 19246367 T G E2F8 Missense_Mutation p.K814N 0.27 tolerated(0.07) benign(0.029) TCGA-D8-A1XK-01 11 20057565 20057565 T C NAV2 Silent p.T966T 0.30 TCGA-D8-A1XK-01 11 290715 290715 G - ATHL1 Frame_Shift_Del p.P172Hfs*16 0.42 TCGA-D8-A1XK-01 11 30255237 30255237 T C FSHB Missense_Mutation p.Y94H 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 11 30938565 30938565 C T DCDC1 Missense_Mutation p.V1102I 0.33 tolerated(0.22) benign(0.001) TCGA-D8-A1XK-01 11 31287064 31287064 A G DCDC1 Silent p.D348D 0.26 TCGA-D8-A1XK-01 11 31451962 31451962 T C DNAJC24 3'UTR 0.26 TCGA-D8-A1XK-01 11 33108677 33108677 C T CSTF3 Missense_Mutation p.R551H 0.32 tolerated(0.09) benign(0.133) TCGA-D8-A1XK-01 11 33113848 33113848 T G CSTF3 Missense_Mutation p.T472P 0.24 deleterious(0.01) benign(0.068) TCGA-D8-A1XK-01 11 33360386 33360386 G A HIPK3 Silent p.A475A 0.19 TCGA-D8-A1XK-01 11 4148031 4148031 A T RRM1 Missense_Mutation p.I480F 0.43 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-D8-A1XK-01 11 4148047 4148047 A C RRM1 Missense_Mutation p.Y485S 0.40 deleterious_low_confidence(0.01) benign(0.292) TCGA-D8-A1XK-01 11 43357466 43357466 G T API5 Nonsense_Mutation p.G472* 0.32 TCGA-D8-A1XK-01 11 44219535 44219535 G A EXT2 Missense_Mutation p.V521I 0.21 tolerated(0.53) possibly_damaging(0.555) TCGA-D8-A1XK-01 11 46408063 46408063 G T CHRM4 Silent p.S15S 0.20 TCGA-D8-A1XK-01 11 46667426 46667426 T C ATG13 Silent p.L53L 0.23 TCGA-D8-A1XK-01 11 46667526 46667526 T G ATG13 Missense_Mutation p.L86R 0.24 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 11 46799048 46799048 T G CKAP5 Missense_Mutation p.I935L 0.28 tolerated(0.49) benign(0.007) TCGA-D8-A1XK-01 11 47698891 47698891 A G AGBL2 Silent p.H693H 0.28 TCGA-D8-A1XK-01 11 47721055 47721055 T C AGBL2 Missense_Mutation p.K213E 0.28 tolerated(0.25) benign(0.009) TCGA-D8-A1XK-01 11 55135492 55135492 C A OR4A15 Missense_Mutation p.L45I 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.842) TCGA-D8-A1XK-01 11 57115697 57115697 A G P2RX3 Missense_Mutation p.I149V 0.21 tolerated(0.44) benign(0.077) TCGA-D8-A1XK-01 11 57511868 57511868 A G BTBD18 Missense_Mutation p.L626P 0.09 tolerated_low_confidence(0.07) benign(0.004) TCGA-D8-A1XK-01 11 60711201 60711201 A G SLC15A3 Missense_Mutation p.V319A 0.38 deleterious(0) possibly_damaging(0.454) TCGA-D8-A1XK-01 11 60886845 60886845 C T CD5 Silent p.C201C 0.38 TCGA-D8-A1XK-01 11 61135894 61135894 T A TMEM138 Intron 0.42 TCGA-D8-A1XK-01 11 61178488 61178488 T C CPSF7 Missense_Mutation p.H491R 0.34 deleterious(0.02) probably_damaging(0.948) TCGA-D8-A1XK-01 11 61725813 61725813 A G BEST1 Intron 0.10 TCGA-D8-A1XK-01 11 62287328 62287328 A G AHNAK Missense_Mutation p.V4854A 0.42 possibly_damaging(0.907) TCGA-D8-A1XK-01 11 62291016 62291016 T C AHNAK Missense_Mutation p.T3625A 0.41 benign(0.014) TCGA-D8-A1XK-01 11 62365601 62365601 A - MTA2 Frame_Shift_Del p.Y129Tfs*33 0.35 TCGA-D8-A1XK-01 11 63533328 63533328 C T C11orf95 RNA 0.33 TCGA-D8-A1XK-01 11 64009989 64009989 A G FKBP2 Missense_Mutation p.I44V 0.25 tolerated(0.57) benign(0.007) TCGA-D8-A1XK-01 11 64010937 64010937 A - FKBP2 Frame_Shift_Del p.K101Sfs*5 0.21 TCGA-D8-A1XK-01 11 64811984 64811984 A C SAC3D1 Silent p.R288R 0.35 TCGA-D8-A1XK-01 11 64814945 64814945 A G NAALADL1 Splice_Site p.X533_splice 0.23 TCGA-D8-A1XK-01 11 64978304 64978304 C A CAPN1 Missense_Mutation p.D693E 0.27 deleterious(0.03) benign(0.166) TCGA-D8-A1XK-01 11 64978812 64978812 T A CAPN1 3'UTR 0.35 TCGA-D8-A1XK-01 11 65062088 65062088 T C POLA2 Silent p.D475D 0.23 TCGA-D8-A1XK-01 11 65063479 65063479 T - POLA2 Intron 0.19 TCGA-D8-A1XK-01 11 65299138 65299138 T C SCYL1 Missense_Mutation p.I367T 0.16 deleterious(0.03) benign(0.021) TCGA-D8-A1XK-01 11 65545571 65545571 A G AP5B1 Missense_Mutation p.V798A 0.28 deleterious(0.01) benign(0.154) TCGA-D8-A1XK-01 11 6578697 6578697 T C DNHD1 Silent p.N2724N 0.18 TCGA-D8-A1XK-01 11 6636122 6636122 T C TPP1 Missense_Mutation p.Q509R 0.23 tolerated(0.12) benign(0.002) TCGA-D8-A1XK-01 11 66407221 66407221 T A RBM4 Silent p.A13A 0.16 TCGA-D8-A1XK-01 11 66456245 66456245 C T SPTBN2 Missense_Mutation p.R2037H 0.14 tolerated(0.39) probably_damaging(0.997) TCGA-D8-A1XK-01 11 6806662 6806662 T C OR2AG1 Missense_Mutation p.Y132H 0.17 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 11 68174114 68174114 G T LRP5 Missense_Mutation p.V642L 0.32 tolerated(0.09) benign(0.051) TCGA-D8-A1XK-01 11 7063639 7063639 A G NLRP14 Missense_Mutation p.N128D 0.38 tolerated(0.45) benign(0) TCGA-D8-A1XK-01 11 73021526 73021527 - C ARHGEF17 Frame_Shift_Ins p.G618Wfs*4 0.45 TCGA-D8-A1XK-01 11 73073179 73073179 T A ARHGEF17 Missense_Mutation p.L1530Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 11 75153568 75153568 T C GDPD5 Missense_Mutation p.N336S 0.29 deleterious(0) probably_damaging(0.976) TCGA-D8-A1XK-01 11 76885826 76885826 C T MYO7A Missense_Mutation p.R654C 0.31 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 11 76924005 76924005 G A MYO7A Silent p.T2121T 0.29 TCGA-D8-A1XK-01 11 89028657 89028657 T C TYR 3'UTR 0.20 TCGA-D8-A1XK-01 11 89891367 89891367 T C NAALAD2 Missense_Mutation p.V284A 0.26 tolerated(0.08) probably_damaging(0.961) TCGA-D8-A1XK-01 11 9051439 9051439 T C SCUBE2 Missense_Mutation p.Q775R 0.26 deleterious(0) possibly_damaging(0.69) TCGA-D8-A1XK-01 11 92087421 92087421 T - FAT3 Frame_Shift_Del p.Y716Ifs*20 0.09 TCGA-D8-A1XK-01 11 92531224 92531224 A G FAT3 Missense_Mutation p.E1682G 0.21 probably_damaging(1) TCGA-D8-A1XK-01 11 94038942 94038942 T A FOLR4 Splice_Site p.X46_splice 0.40 TCGA-D8-A1XK-01 11 94231399 94231399 G A ANKRD49 Missense_Mutation p.G141S 0.23 deleterious(0.05) possibly_damaging(0.461) TCGA-D8-A1XK-01 11 96124811 96124811 C T JRKL Missense_Mutation p.T333M 0.26 tolerated(0.07) benign(0.098) TCGA-D8-A1XK-01 11 977175 977175 T C AP2A2 Missense_Mutation p.M185T 0.41 tolerated(0.39) benign(0.002) TCGA-D8-A1XK-01 12 101680248 101680248 T C UTP20 Missense_Mutation p.L159P 0.34 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 12 105605039 105605039 A G APPL2 Silent p.P114P 0.42 TCGA-D8-A1XK-01 12 106770148 106770148 T C POLR3B Missense_Mutation p.M139T 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 12 109898454 109898454 T C KCTD10 Missense_Mutation p.Q125R 0.42 tolerated(0.07) benign(0.058) TCGA-D8-A1XK-01 12 112117118 112117118 A T BRAP Missense_Mutation p.V157E 0.41 tolerated(0.06) benign(0.037) TCGA-D8-A1XK-01 12 113553048 113553048 C G RASAL1 Missense_Mutation p.R342P 0.45 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 12 118506394 118506394 T G VSIG10 Missense_Mutation p.N452T 0.43 tolerated(0.09) benign(0.028) TCGA-D8-A1XK-01 12 121132901 121132901 T C MLEC Missense_Mutation p.Y199H 0.44 tolerated(0.31) benign(0.142) TCGA-D8-A1XK-01 12 121465376 121465376 T C OASL Intron 0.15 TCGA-D8-A1XK-01 12 122079541 122079541 T C ORAI1 Missense_Mutation p.Y302H 0.78 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-D8-A1XK-01 12 122399920 122399920 C A WDR66 Missense_Mutation p.L782M 0.46 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 12 122966592 122966592 T C ZCCHC8 Missense_Mutation p.M259V 0.49 deleterious(0.03) benign(0.05) TCGA-D8-A1XK-01 12 123201202 123201202 T C HCAR3 Missense_Mutation p.K28R 0.08 tolerated(0.6) benign(0.002) TCGA-D8-A1XK-01 12 123471302 123471302 G A PITPNM2 Missense_Mutation p.A1163V 0.39 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 12 124130032 124130032 A G GTF2H3 Missense_Mutation p.M42V 0.37 tolerated(0.58) benign(0.004) TCGA-D8-A1XK-01 12 12483636 12483636 T C MANSC1 Silent p.S207S 0.46 TCGA-D8-A1XK-01 12 125302247 125302247 G A SCARB1 Missense_Mutation p.R45C 0.28 tolerated(0.09) benign(0.049) TCGA-D8-A1XK-01 12 1740587 1740587 G A WNT5B Missense_Mutation p.A23T 0.24 tolerated(0.15) benign(0.278) TCGA-D8-A1XK-01 12 1887038 1887038 C T ADIPOR2 Nonsense_Mutation p.R104* 0.22 TCGA-D8-A1XK-01 12 1993950 1993950 T C CACNA2D4 Missense_Mutation p.N419S 0.29 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XK-01 12 26703232 26703232 A T ITPR2 Missense_Mutation p.I1674N 0.23 deleterious(0) possibly_damaging(0.781) TCGA-D8-A1XK-01 12 27470917 27470917 A G STK38L Silent p.V348V 0.28 TCGA-D8-A1XK-01 12 2983284 2983284 G T FOXM1 Missense_Mutation p.L121I 0.29 tolerated(0.43) benign(0.026) TCGA-D8-A1XK-01 12 3029956 3029956 A - TULP3 Frame_Shift_Del p.K42Sfs*31 0.36 TCGA-D8-A1XK-01 12 32764183 32764183 G A FGD4 Missense_Mutation p.R435Q 0.10 deleterious(0) possibly_damaging(0.477) TCGA-D8-A1XK-01 12 39763645 39763645 A G KIF21A Silent p.G112G 0.30 TCGA-D8-A1XK-01 12 40713869 40713870 - A LRRK2 Frame_Shift_Ins p.R1639Kfs*13 0.28 TCGA-D8-A1XK-01 12 41337525 41337525 A G CNTN1 Silent p.T502T 0.26 TCGA-D8-A1XK-01 12 43825144 43825144 T C ADAMTS20 Silent p.P1084P 0.33 TCGA-D8-A1XK-01 12 44782339 44782339 G A TMEM117 Missense_Mutation p.V477I 0.35 tolerated_low_confidence(0.16) benign(0.288) TCGA-D8-A1XK-01 12 48119241 48119241 A T ENDOU 5'UTR 0.45 TCGA-D8-A1XK-01 12 48866672 48866672 A G ANP32D Silent p.R75R 0.51 TCGA-D8-A1XK-01 12 49086842 49086842 G C CCNT1 Missense_Mutation p.P719A 0.33 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1XK-01 12 49948243 49948243 G A KCNH3 Missense_Mutation p.S681N 0.35 deleterious(0) possibly_damaging(0.845) TCGA-D8-A1XK-01 12 56524634 56524634 T C ESYT1 Silent p.T164T 0.45 TCGA-D8-A1XK-01 12 56555225 56555225 C T MYL6 3'UTR 0.36 TCGA-D8-A1XK-01 12 56629477 56629477 T C SLC39A5 Missense_Mutation p.L313P 0.35 tolerated(0.26) benign(0.052) TCGA-D8-A1XK-01 12 56743379 56743379 G A STAT2 Silent p.S417S 0.36 TCGA-D8-A1XK-01 12 57881863 57881863 T A MARS 5'UTR 0.52 TCGA-D8-A1XK-01 12 57924554 57924554 T C DCTN2 Missense_Mutation p.Q380R 0.39 deleterious(0) probably_damaging(0.931) TCGA-D8-A1XK-01 12 57927826 57927826 T C DCTN2 Silent p.G198G 0.11 TCGA-D8-A1XK-01 12 60173290 60173290 A G SLC16A7 Missense_Mutation p.I423V 0.38 tolerated(0.54) benign(0.078) TCGA-D8-A1XK-01 12 6660141 6660141 A G IFFO1 Missense_Mutation p.I267T 0.19 tolerated(0.29) benign(0.003) TCGA-D8-A1XK-01 12 6709716 6709716 A T CHD4 Silent p.T349T 0.35 TCGA-D8-A1XK-01 12 6711260 6711260 G A CHD4 Missense_Mutation p.R102C 0.27 tolerated_low_confidence(0.1) possibly_damaging(0.876) TCGA-D8-A1XK-01 12 6928547 6928547 C T CD4 3'UTR 0.26 TCGA-D8-A1XK-01 12 6948766 6948766 A G LEPREL2 3'UTR 0.25 TCGA-D8-A1XK-01 12 72030786 72030786 T C ZFC3H1 Silent p.E593E 0.14 TCGA-D8-A1XK-01 12 72070747 72070747 A G THAP2 Silent p.L182L 0.26 TCGA-D8-A1XK-01 12 72094702 72094702 T C TMEM19 Missense_Mutation p.V313A 0.39 deleterious(0) benign(0.005) TCGA-D8-A1XK-01 12 72300837 72300837 T C TBC1D15 Missense_Mutation p.F424L 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-D8-A1XK-01 12 7249128 7249129 CA - C1RL Frame_Shift_Del p.V441Gfs*26 0.29 TCGA-D8-A1XK-01 12 7640574 7640574 T C CD163 Silent p.E510E 0.32 TCGA-D8-A1XK-01 12 77427807 77427807 T C E2F7 Missense_Mutation p.D380G 0.15 tolerated(0.46) benign(0.424) TCGA-D8-A1XK-01 12 7805077 7805077 G T APOBEC1 Missense_Mutation p.D133E 0.37 tolerated(0.1) benign(0.049) TCGA-D8-A1XK-01 12 7842414 7842414 A G GDF3 3'UTR 0.13 TCGA-D8-A1XK-01 12 8328540 8328540 T C ZNF705A Splice_Site p.X106_splice 0.25 TCGA-D8-A1XK-01 12 88496844 88496844 C T CEP290 Intron 0.61 TCGA-D8-A1XK-01 12 95478281 95478281 C T FGD6 Missense_Mutation p.A1417T 0.39 tolerated(0.07) possibly_damaging(0.536) TCGA-D8-A1XK-01 12 95603960 95603960 T C FGD6 Missense_Mutation p.N367S 0.07 tolerated_low_confidence(0.74) benign(0.009) TCGA-D8-A1XK-01 13 108881759 108881759 C T ABHD13 Missense_Mutation p.L65F 0.45 deleterious(0.01) probably_damaging(0.994) TCGA-D8-A1XK-01 13 111274639 111274639 T C CARKD Silent p.N59N 0.10 TCGA-D8-A1XK-01 13 113153356 113153356 T C TUBGCP3 Intron 0.33 TCGA-D8-A1XK-01 13 114138363 114138363 A G DCUN1D2 Silent p.L4L 0.45 TCGA-D8-A1XK-01 13 20987466 20987466 A G CRYL1 Missense_Mutation p.Y232H 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1XK-01 13 23915463 23915463 A G SACS Missense_Mutation p.V851A 0.07 probably_damaging(0.98) TCGA-D8-A1XK-01 13 24520495 24520495 G C ANKRD20A19P RNA 0.18 TCGA-D8-A1XK-01 13 32761697 32761697 A G FRY Silent p.V1165V 0.06 TCGA-D8-A1XK-01 13 33110048 33110048 A G N4BP2L2 Intron 0.36 TCGA-D8-A1XK-01 13 35615293 35615293 T C NBEA Missense_Mutation p.M173T 0.08 deleterious(0) benign(0.434) TCGA-D8-A1XK-01 13 36748865 36748865 C G SOHLH2 Missense_Mutation p.M338I 0.27 deleterious(0.01) benign(0.253) TCGA-D8-A1XK-01 13 41704703 41704703 A T KBTBD6 Missense_Mutation p.F649I 0.12 tolerated_low_confidence(0.14) benign(0.008) TCGA-D8-A1XK-01 13 41767525 41767525 T C KBTBD7 Missense_Mutation p.Y290C 0.11 deleterious(0.02) probably_damaging(0.94) TCGA-D8-A1XK-01 13 42267042 42267042 T A VWA8 Nonsense_Mutation p.K1211* 0.33 TCGA-D8-A1XK-01 13 48660424 48660424 T G MED4 Missense_Mutation p.Q119H 0.18 tolerated(0.6) benign(0.002) TCGA-D8-A1XK-01 13 48660516 48660516 T G MED4 Missense_Mutation p.I89L 0.19 tolerated(0.24) benign(0.002) TCGA-D8-A1XK-01 13 51957870 51957870 C T INTS6 Missense_Mutation p.R301H 0.40 deleterious(0.01) benign(0.038) TCGA-D8-A1XK-01 13 58206872 58206872 C T PCDH17 Silent p.Y64Y 0.43 TCGA-D8-A1XK-01 13 79932450 79932450 T G RBM26 Missense_Mutation p.N550H 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 14 100742955 100742955 A C YY1 Missense_Mutation p.Q344H 0.21 tolerated(0.09) benign(0.233) TCGA-D8-A1XK-01 14 101350350 101350350 T C RTL1 Missense_Mutation p.E259G 0.25 tolerated(0.22) benign(0.005) TCGA-D8-A1XK-01 14 101350605 101350605 T C RTL1 Missense_Mutation p.Y174C 0.24 deleterious(0) possibly_damaging(0.707) TCGA-D8-A1XK-01 14 102509062 102509062 A G DYNC1H1 Missense_Mutation p.I4164V 0.22 benign(0.047) TCGA-D8-A1XK-01 14 102516130 102516130 A G DYNC1H1 Missense_Mutation p.N4532S 0.16 possibly_damaging(0.542) TCGA-D8-A1XK-01 14 103597436 103597436 C A TNFAIP2 Missense_Mutation p.T416K 0.21 tolerated(0.52) benign(0.003) TCGA-D8-A1XK-01 14 105410652 105410652 G T AHNAK2 Silent p.P3712P 0.33 TCGA-D8-A1XK-01 14 105419812 105419812 T - AHNAK2 Frame_Shift_Del p.K659Rfs*5 0.23 TCGA-D8-A1XK-01 14 20528647 20528647 A G OR4L1 Silent p.S148S 0.39 TCGA-D8-A1XK-01 14 21250102 21250102 A G RNASE6 Missense_Mutation p.S82G 0.37 deleterious(0.03) benign(0.253) TCGA-D8-A1XK-01 14 21770705 21770705 T C RPGRIP1 Silent p.N183N 0.36 TCGA-D8-A1XK-01 14 21945048 21945048 G A RAB2B 5'UTR 0.37 TCGA-D8-A1XK-01 14 23532278 23532278 A G ACIN1 Silent p.L973L 0.41 TCGA-D8-A1XK-01 14 24807202 24807202 G T RIPK3 Missense_Mutation p.Q237K 0.47 tolerated(0.35) benign(0.125) TCGA-D8-A1XK-01 14 35005482 35005482 C T EAPP Splice_Site p.X25_splice 0.22 TCGA-D8-A1XK-01 14 35242776 35242776 A G BAZ1A Splice_Site p.X1051_splice 0.09 TCGA-D8-A1XK-01 14 36096681 36096681 T C RALGAPA1 Missense_Mutation p.T1652A 0.35 tolerated(0.59) benign(0.003) TCGA-D8-A1XK-01 14 39716241 39716241 T C MIA2 Missense_Mutation p.Y155H 0.43 tolerated(0.21) benign(0.052) TCGA-D8-A1XK-01 14 50065893 50065893 T C LRR1 Missense_Mutation p.L52P 0.46 tolerated(0.24) benign(0.304) TCGA-D8-A1XK-01 14 50576310 50576311 - A VCPKMT 3'UTR 0.25 TCGA-D8-A1XK-01 14 52507555 52507555 G T NID2 Missense_Mutation p.H614N 0.40 tolerated(0.09) benign(0.05) TCGA-D8-A1XK-01 14 57052487 57052487 T C TMEM260 Silent p.H67H 0.38 TCGA-D8-A1XK-01 14 59789672 59789672 T C DAAM1 Missense_Mutation p.M168T 0.33 tolerated(0.06) unknown(0) TCGA-D8-A1XK-01 14 61442326 61442326 A G TRMT5 Silent p.A437A 0.42 TCGA-D8-A1XK-01 14 62213905 62213905 T A HIF1A 3'UTR 0.28 TCGA-D8-A1XK-01 14 64678806 64678806 G A SYNE2 Missense_Mutation p.R6284H 0.33 probably_damaging(1) TCGA-D8-A1XK-01 14 64936324 64936324 T A AKAP5 Silent p.I404I 0.44 TCGA-D8-A1XK-01 14 69341721 69341721 A G ACTN1 Missense_Mutation p.M867T 0.29 tolerated(0.08) benign(0) TCGA-D8-A1XK-01 14 69966879 69966879 A - PLEKHD1 Frame_Shift_Del p.K68Rfs*36 0.31 TCGA-D8-A1XK-01 14 70926261 70926261 T - ADAM21 Frame_Shift_Del p.L684Cfs*3 0.30 TCGA-D8-A1XK-01 14 73408476 73408476 A T DCAF4 Silent p.A125A 0.36 TCGA-D8-A1XK-01 14 74974787 74974787 A G LTBP2 Missense_Mutation p.C1222R 0.50 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 14 75516229 75516229 T C MLH3 Missense_Mutation p.R44G 0.31 deleterious(0) probably_damaging(0.982) TCGA-D8-A1XK-01 14 77844722 77844722 A G SAMD15 Missense_Mutation p.T321A 0.48 tolerated(0.12) benign(0.147) TCGA-D8-A1XK-01 14 89124579 89124579 T - EML5 Frame_Shift_Del p.R1277Gfs*43 0.33 TCGA-D8-A1XK-01 14 92627467 92627467 T C CPSF2 Silent p.H711H 0.19 TCGA-D8-A1XK-01 14 93263950 93263950 T G GOLGA5 Silent p.T56T 0.23 TCGA-D8-A1XK-01 14 93761193 93761193 T - BTBD7 Frame_Shift_Del p.K58Rfs*44 0.21 TCGA-D8-A1XK-01 14 94089110 94089110 C T UNC79 Missense_Mutation p.A1667V 0.16 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D8-A1XK-01 15 101523888 101523888 G C LRRK1 Missense_Mutation p.L139F 0.24 deleterious(0.04) probably_damaging(1) TCGA-D8-A1XK-01 15 101593286 101593286 A G LRRK1 Silent p.V1283V 0.13 TCGA-D8-A1XK-01 15 101718063 101718063 T C CHSY1 Missense_Mutation p.N647D 0.17 deleterious(0.01) probably_damaging(0.962) TCGA-D8-A1XK-01 15 101821779 101821779 A G SNRPA1 3'UTR 0.11 TCGA-D8-A1XK-01 15 102291902 102291902 C A DNM1P47 RNA 0.06 TCGA-D8-A1XK-01 15 28525309 28525309 G A HERC2 Silent p.R149R 0.19 TCGA-D8-A1XK-01 15 31776728 31776728 A G OTUD7A Missense_Mutation p.L517P 0.37 deleterious(0) probably_damaging(0.917) TCGA-D8-A1XK-01 15 38591681 38591681 T C SPRED1 Missense_Mutation p.V47A 0.16 tolerated(0.12) benign(0.017) TCGA-D8-A1XK-01 15 40057882 40057882 C G FSIP1 Missense_Mutation p.D126H 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 15 41634593 41634593 T C NUSAP1 Silent p.L35L 0.31 TCGA-D8-A1XK-01 15 41854803 41854803 T C TYRO3 Missense_Mutation p.F156S 0.52 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XK-01 15 41854888 41854888 T G TYRO3 Silent p.A184A 0.09 TCGA-D8-A1XK-01 15 42127047 42127047 G A JMJD7-PLA2G4B Silent p.L58L 0.47 TCGA-D8-A1XK-01 15 42536296 42536296 A G TMEM87A Missense_Mutation p.S192P 0.45 tolerated(0.32) benign(0) TCGA-D8-A1XK-01 15 42742957 42742957 A - ZNF106 Frame_Shift_Del p.S482Pfs*33 0.25 TCGA-D8-A1XK-01 15 43584291 43584291 G A TGM7 Silent p.D148D 0.37 TCGA-D8-A1XK-01 15 43739574 43739574 A G TP53BP1 Silent p.S942S 0.20 TCGA-D8-A1XK-01 15 43816227 43816227 C A MAP1A Silent p.A852A 0.11 TCGA-D8-A1XK-01 15 44211718 44211718 T C FRMD5 Missense_Mutation p.M90V 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-D8-A1XK-01 15 51790795 51790795 A G DMXL2 Silent p.A1542A 0.36 TCGA-D8-A1XK-01 15 57524621 57524621 A G TCF12 Missense_Mutation p.D273G 0.30 tolerated(0.06) possibly_damaging(0.874) TCGA-D8-A1XK-01 15 57730269 57730269 T A CGNL1 Missense_Mutation p.D24E 0.12 tolerated_low_confidence(0.32) benign(0.005) TCGA-D8-A1XK-01 15 59064339 59064339 C T FAM63B Nonsense_Mutation p.Q249* 0.57 TCGA-D8-A1XK-01 15 62327154 62327154 A G VPS13C Splice_Site p.X95_splice 0.19 TCGA-D8-A1XK-01 15 62990999 62990999 A G TLN2 Missense_Mutation p.H507R 0.53 tolerated(0.43) benign(0) TCGA-D8-A1XK-01 15 63047807 63047807 C T TLN2 Missense_Mutation p.T1518M 0.62 deleterious(0) probably_damaging(0.989) TCGA-D8-A1XK-01 15 63421881 63421881 T C LACTB Intron 0.10 TCGA-D8-A1XK-01 15 65421426 65421426 A T PDCD7 Missense_Mutation p.I318N 0.18 deleterious(0) probably_damaging(0.929) TCGA-D8-A1XK-01 15 65702618 65702618 A G IGDCC4 Missense_Mutation p.V154A 0.32 deleterious(0.02) probably_damaging(0.974) TCGA-D8-A1XK-01 15 65777497 65777497 A G DPP8 Silent p.G335G 0.52 TCGA-D8-A1XK-01 15 66613033 66613033 A - DIS3L Frame_Shift_Del p.N431Tfs*18 0.25 TCGA-D8-A1XK-01 15 66727540 66727540 T G MAP2K1 Missense_Mutation p.S86A 0.16 tolerated(0.67) benign(0.045) TCGA-D8-A1XK-01 15 72146807 72146807 A G MYO9A Missense_Mutation p.I2086T 0.16 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 15 72152111 72152111 A G MYO9A Missense_Mutation p.C2040R 0.25 deleterious(0) possibly_damaging(0.8) TCGA-D8-A1XK-01 15 75500456 75500456 T A C15orf39 Silent p.I689I 0.47 TCGA-D8-A1XK-01 15 78452522 78452522 T C IDH3A Missense_Mutation p.M88T 0.27 deleterious(0) possibly_damaging(0.593) TCGA-D8-A1XK-01 15 78568072 78568072 T C DNAJA4 Splice_Site p.X322_splice 0.58 TCGA-D8-A1XK-01 15 80263166 80263166 A C BCL2A1 Missense_Mutation p.L99R 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 15 83926688 83926688 C G BNC1 Missense_Mutation p.V831L 0.09 deleterious(0.03) benign(0.167) TCGA-D8-A1XK-01 15 85159710 85159710 A G ZSCAN2 Intron 0.11 TCGA-D8-A1XK-01 15 85213987 85213987 G A SEC11A Missense_Mutation p.T153M 0.47 deleterious(0) benign(0.104) TCGA-D8-A1XK-01 15 89698709 89698709 A G ABHD2 Missense_Mutation p.N161S 0.19 deleterious(0.03) probably_damaging(0.912) TCGA-D8-A1XK-01 15 89876333 89876333 G A POLG Missense_Mutation p.S218L 0.33 tolerated(0.22) benign(0.004) TCGA-D8-A1XK-01 15 90454024 90454024 T C C15orf38-AP3S2 Silent p.E40E 0.42 TCGA-D8-A1XK-01 15 91418964 91418964 C - FURIN 5'UTR 0.32 TCGA-D8-A1XK-01 15 93043696 93043696 A G C15orf32 3'UTR 0.09 TCGA-D8-A1XK-01 15 94945751 94945751 A G MCTP2 Intron 0.15 TCGA-D8-A1XK-01 15 96880700 96880700 T C NR2F2 Missense_Mutation p.L365P 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 16 10626885 10626885 G A EMP2 Silent p.N127N 0.19 TCGA-D8-A1XK-01 16 10775958 10775958 T C TEKT5 Missense_Mutation p.D252G 0.27 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 16 10788551 10788551 G A TEKT5 Silent p.N60N 0.09 TCGA-D8-A1XK-01 16 11016271 11016271 T C CIITA Missense_Mutation p.Y1081H 0.34 deleterious(0) probably_damaging(0.968) TCGA-D8-A1XK-01 16 12061488 12061488 T C TNFRSF17 Silent p.I113I 0.41 TCGA-D8-A1XK-01 16 18841308 18841308 T - SMG1 Frame_Shift_Del p.R3025Dfs*31 0.30 TCGA-D8-A1XK-01 16 18846392 18846392 T C SMG1 Missense_Mutation p.N2718D 0.32 deleterious(0.03) probably_damaging(0.971) TCGA-D8-A1XK-01 16 19034503 19034503 T C TMC7 Silent p.L233L 0.08 TCGA-D8-A1XK-01 16 20043420 20043420 A G GPR139 Silent p.I233I 0.29 TCGA-D8-A1XK-01 16 2011613 2011613 G A NDUFB10 Missense_Mutation p.V129M 0.38 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XK-01 16 20634607 20634607 A T ACSM1 3'UTR 0.32 TCGA-D8-A1XK-01 16 21288836 21288836 G A CRYM Silent p.Y80Y 0.26 TCGA-D8-A1XK-01 16 23117794 23117794 A C USP31 Silent p.T262T 0.19 TCGA-D8-A1XK-01 16 23360011 23360011 G A SCNN1B Missense_Mutation p.D31N 0.31 tolerated(0.9) benign(0.05) TCGA-D8-A1XK-01 16 2369781 2369781 T C ABCA3 Missense_Mutation p.Y225C 0.38 deleterious(0) possibly_damaging(0.886) TCGA-D8-A1XK-01 16 24574618 24574618 T A RBBP6 Splice_Site p.X462_splice 0.15 TCGA-D8-A1XK-01 16 27788938 27788938 T C KIAA0556 Missense_Mutation p.V1520A 0.11 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 16 28123194 28123194 T C XPO6 Missense_Mutation p.Y762C 0.13 deleterious(0) possibly_damaging(0.789) TCGA-D8-A1XK-01 16 2816852 2816852 C A SRRM2 Missense_Mutation p.A2108E 0.49 probably_damaging(0.993) TCGA-D8-A1XK-01 16 28931139 28931139 G A RABEP2 Missense_Mutation p.P134S 0.25 deleterious(0.03) possibly_damaging(0.898) TCGA-D8-A1XK-01 16 3025624 3025624 A G PKMYT1 Missense_Mutation p.C190R 0.69 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 16 30389784 30389784 C - SEPT1 Frame_Shift_Del p.A364Pfs*? 0.23 TCGA-D8-A1XK-01 16 30515494 30515494 A G ITGAL Splice_Site p.X716_splice 0.14 TCGA-D8-A1XK-01 16 30537065 30537065 G A ZNF768 Silent p.S132S 0.17 TCGA-D8-A1XK-01 16 30594328 30594328 C T ZNF785 Silent p.A257A 0.36 TCGA-D8-A1XK-01 16 30999275 30999275 T C HSD3B7 Missense_Mutation p.L294P 0.23 deleterious(0) probably_damaging(0.921) TCGA-D8-A1XK-01 16 31096162 31096162 A G PRSS53 Silent p.P406P 0.31 TCGA-D8-A1XK-01 16 3293879 3293879 A T MEFV Silent p.I591I 0.55 TCGA-D8-A1XK-01 16 3781803 3781803 A G CREBBP Missense_Mutation p.Y1622H 0.43 unknown(0) TCGA-D8-A1XK-01 16 46836776 46836776 A G C16orf87 3'UTR 0.09 TCGA-D8-A1XK-01 16 46940839 46940839 G A GPT2 Silent p.A176A 0.10 TCGA-D8-A1XK-01 16 47117199 47117199 A G NETO2 Missense_Mutation p.I504T 0.20 tolerated_low_confidence(0.05) benign(0.004) TCGA-D8-A1XK-01 16 47497793 47497793 T C PHKB Intron 0.12 TCGA-D8-A1XK-01 16 48201522 48201522 G A ABCC11 Missense_Mutation p.T1314I 0.29 tolerated(0.17) benign(0.052) TCGA-D8-A1XK-01 16 53691441 53691441 T C RPGRIP1L Missense_Mutation p.H502R 0.13 deleterious(0) possibly_damaging(0.905) TCGA-D8-A1XK-01 16 55563839 55563839 T A LPCAT2 Missense_Mutation p.S208T 0.11 deleterious(0) possibly_damaging(0.771) TCGA-D8-A1XK-01 16 55563841 55563841 A C LPCAT2 Silent p.S208S 0.12 TCGA-D8-A1XK-01 16 55730220 55730220 A G SLC6A2 Missense_Mutation p.M411V 0.16 deleterious(0) benign(0.411) TCGA-D8-A1XK-01 16 57054809 57054809 A G NLRC5 Missense_Mutation p.H62R 0.18 tolerated(0.34) benign(0.001) TCGA-D8-A1XK-01 16 57111205 57111205 A G NLRC5 Intron 0.21 TCGA-D8-A1XK-01 16 57752315 57752315 T C CCDC135 Silent p.T378T 0.34 TCGA-D8-A1XK-01 16 57795058 57795058 C T KIFC3 Missense_Mutation p.R633H 0.15 deleterious(0) probably_damaging(0.912) TCGA-D8-A1XK-01 16 58018605 58018605 G T TEPP Silent p.A172A 0.20 TCGA-D8-A1XK-01 16 66620992 66620992 A G CMTM2 Silent p.L179L 0.19 TCGA-D8-A1XK-01 16 66764084 66764084 A G DYNC1LI2 Silent p.H324H 0.08 TCGA-D8-A1XK-01 16 67768860 67768860 A T RANBP10 Missense_Mutation p.I226N 0.32 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XK-01 16 67768929 67768929 G T RANBP10 Missense_Mutation p.T203N 0.35 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 16 67977876 67977876 A G LCAT Silent p.S43S 0.35 TCGA-D8-A1XK-01 16 68012203 68012203 T C DPEP3 Missense_Mutation p.Y243C 0.14 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 16 69693765 69693765 T C NFAT5 Silent p.T444T 0.29 TCGA-D8-A1XK-01 16 69776394 69776394 G T NOB1 Missense_Mutation p.N360K 0.19 deleterious(0) benign(0.419) TCGA-D8-A1XK-01 16 69974073 69974073 C T WWP2 3'UTR 0.29 TCGA-D8-A1XK-01 16 70566408 70566408 A G SF3B3 Silent p.E199E 0.17 TCGA-D8-A1XK-01 16 70566471 70566471 G T SF3B3 Silent p.V220V 0.20 TCGA-D8-A1XK-01 16 72166652 72166652 A G PMFBP1 Missense_Mutation p.L481P 0.18 deleterious(0.05) probably_damaging(0.929) TCGA-D8-A1XK-01 16 7645617 7645617 A G RBFOX1 Missense_Mutation p.T199A 0.32 deleterious(0) possibly_damaging(0.771) TCGA-D8-A1XK-01 16 78466540 78466540 T C WWOX Missense_Mutation p.V316A 0.15 deleterious(0) possibly_damaging(0.67) TCGA-D8-A1XK-01 16 84914200 84914200 A G CRISPLD2 Intron 0.27 TCGA-D8-A1XK-01 16 88497459 88497459 G A ZNF469 Missense_Mutation p.R1166H 0.38 benign(0) TCGA-D8-A1XK-01 16 88666196 88666196 T G ZC3H18 Intron 0.28 TCGA-D8-A1XK-01 16 89357145 89357145 C A ANKRD11 Missense_Mutation p.K163N 0.14 probably_damaging(0.987) TCGA-D8-A1XK-01 17 15535965 15535965 A G RP11-385D13.1 Silent p.T291T 0.40 TCGA-D8-A1XK-01 17 17053480 17053480 T A MPRIP Missense_Mutation p.I433N 0.25 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XK-01 17 19575060 19575060 G A ALDH3A2 Missense_Mutation p.G412R 0.27 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 17 19812547 19812547 T C AKAP10 Missense_Mutation p.S644G 0.31 tolerated(0.13) benign(0.021) TCGA-D8-A1XK-01 17 20919169 20919169 A G USP22 Missense_Mutation p.L245P 0.43 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 17 21087713 21087713 C A DHRS7B Missense_Mutation p.Q186K 0.21 tolerated(0.24) benign(0.004) TCGA-D8-A1XK-01 17 27017178 27017178 T C SUPT6H Missense_Mutation p.Y1141H 0.27 deleterious(0) probably_damaging(0.99) TCGA-D8-A1XK-01 17 27778624 27778624 T C TAOK1 Missense_Mutation p.F20L 0.10 tolerated(0.6) benign(0.019) TCGA-D8-A1XK-01 17 28548756 28548756 A C SLC6A4 Missense_Mutation p.L74R 0.15 tolerated(0.54) benign(0.048) TCGA-D8-A1XK-01 17 29123191 29123191 A G CRLF3 Missense_Mutation p.V197A 0.18 tolerated(0.1) possibly_damaging(0.496) TCGA-D8-A1XK-01 17 29563041 29563041 T C NF1 Splice_Site p.X1325_splice 0.40 TCGA-D8-A1XK-01 17 33288280 33288280 T C CCT6B Missense_Mutation p.K45E 0.42 deleterious(0.02) possibly_damaging(0.798) TCGA-D8-A1XK-01 17 40265785 40265785 C T KAT2A Missense_Mutation p.R799Q 0.56 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XK-01 17 41143157 41143196 GACTATGGCTGTGCGGAAGGAGCTAACGGTGGCTGTGAGG - RUNDC1 Frame_Shift_Del p.M424Cfs*13 0.53 TCGA-D8-A1XK-01 17 42390802 42390802 G A RUNDC3A Missense_Mutation p.R130Q 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-D8-A1XK-01 17 43367862 43367862 C A MAP3K14 RNA 0.45 TCGA-D8-A1XK-01 17 43585807 43585807 G T LRRC37A4P Intron 0.40 TCGA-D8-A1XK-01 17 4434032 4434032 C T SPNS2 Missense_Mutation p.R227C 0.38 deleterious(0) probably_damaging(0.938) TCGA-D8-A1XK-01 17 4535246 4535246 A G ALOX15 Missense_Mutation p.F583L 0.51 tolerated(0.59) benign(0.006) TCGA-D8-A1XK-01 17 4578434 4578434 A G PELP1 Missense_Mutation p.V405A 0.51 probably_damaging(0.986) TCGA-D8-A1XK-01 17 45787926 45787926 T C TBKBP1 Silent p.P594P 0.20 TCGA-D8-A1XK-01 17 46133761 46133761 T A NFE2L1 Missense_Mutation p.I175N 0.26 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 17 46629396 46629396 G - HOXB3 Frame_Shift_Del p.G148Afs*72 0.36 TCGA-D8-A1XK-01 17 47783658 47783658 G A SLC35B1 Missense_Mutation p.R83W 0.46 deleterious(0.01) possibly_damaging(0.773) TCGA-D8-A1XK-01 17 48551262 48551262 G C ACSF2 Missense_Mutation p.G542A 0.41 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 17 48940756 48940756 T C TOB1 Missense_Mutation p.N208S 0.13 tolerated(0.4) benign(0.084) TCGA-D8-A1XK-01 17 5013061 5013061 A G ZNF232 Silent p.G42G 0.36 TCGA-D8-A1XK-01 17 5072193 5072193 T C USP6 Silent p.H1120H 0.14 TCGA-D8-A1XK-01 17 53481166 53481166 T C MMD Silent p.A136A 0.36 TCGA-D8-A1XK-01 17 54939578 54939578 A T DGKE Missense_Mutation p.N497I 0.16 deleterious(0.02) probably_damaging(1) TCGA-D8-A1XK-01 17 57292288 57292288 T - SMG8 Frame_Shift_Del p.F968Sfs*9 0.31 TCGA-D8-A1XK-01 17 58506842 58506842 G A C17orf64 Silent p.R183R 0.47 TCGA-D8-A1XK-01 17 59969042 59969042 A C INTS2 Missense_Mutation p.I577M 0.33 deleterious(0) benign(0.387) TCGA-D8-A1XK-01 17 60751429 60751429 C T MRC2 Silent p.G489G 0.42 TCGA-D8-A1XK-01 17 61566421 61566421 C T ACE Missense_Mutation p.R857C 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-D8-A1XK-01 17 61899365 61899365 T C FTSJ3 Missense_Mutation p.Q485R 0.27 tolerated(0.19) benign(0.001) TCGA-D8-A1XK-01 17 62530794 62530794 A G CEP95 Missense_Mutation p.Y670C 0.06 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XK-01 17 65074496 65074496 G A HELZ Missense_Mutation p.R1901W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1XK-01 17 66040147 66040147 A G KPNA2 Missense_Mutation p.N375S 0.24 tolerated(0.36) benign(0.018) TCGA-D8-A1XK-01 17 67538016 67538016 T G MAP2K6 3'UTR 0.14 TCGA-D8-A1XK-01 17 71204484 71204484 A G COG1 Missense_Mutation p.D946G 0.30 deleterious(0.01) possibly_damaging(0.589) TCGA-D8-A1XK-01 17 72767957 72767957 A G NAT9 Missense_Mutation p.L177P 0.33 deleterious(0.03) probably_damaging(0.928) TCGA-D8-A1XK-01 17 73164342 73164342 A C SUMO2 3'UTR 0.28 TCGA-D8-A1XK-01 17 7319375 7319375 T A NLGN2 Missense_Mutation p.V528D 0.60 deleterious(0) probably_damaging(0.923) TCGA-D8-A1XK-01 17 73503687 73503687 A G CASKIN2 Silent p.T74T 0.17 TCGA-D8-A1XK-01 17 73835919 73835919 C T UNC13D Splice_Site p.X352_splice 0.24 TCGA-D8-A1XK-01 17 73836403 73836403 C T UNC13D Missense_Mutation p.R254H 0.36 tolerated(0.9) benign(0) TCGA-D8-A1XK-01 17 73851355 73851355 C A WBP2 Silent p.S8S 0.19 TCGA-D8-A1XK-01 17 73951690 73951690 T C ACOX1 Missense_Mutation p.N244S 0.19 tolerated(0.05) benign(0.006) TCGA-D8-A1XK-01 17 74289014 74289014 A G QRICH2 Silent p.R432R 0.04 TCGA-D8-A1XK-01 17 74300972 74300972 C T QRICH2 Silent p.E29E 0.19 TCGA-D8-A1XK-01 17 74328411 74328411 C T PRPSAP1 Silent p.K132K 0.12 TCGA-D8-A1XK-01 17 74566662 74566662 A G ST6GALNAC2 Missense_Mutation p.L253P 0.16 benign(0.004) TCGA-D8-A1XK-01 17 7572829 7572829 T C TP53 3'UTR 0.47 TCGA-D8-A1XK-01 17 76067210 76067210 C T TNRC6C Silent p.S938S 0.24 TCGA-D8-A1XK-01 17 76420260 76420260 C A PGS1 3'UTR 0.27 TCGA-D8-A1XK-01 17 76486797 76486798 - G DNAH17 Frame_Shift_Ins p.D2254Rfs*29 0.18 TCGA-D8-A1XK-01 17 7680816 7680816 T C DNAH2 Missense_Mutation p.I1704T 0.47 benign(0.269) TCGA-D8-A1XK-01 17 78182035 78182035 G A CARD14 Missense_Mutation p.S969N 0.24 deleterious(0.04) benign(0.309) TCGA-D8-A1XK-01 17 78293304 78293304 C T RNF213 Intron 0.23 TCGA-D8-A1XK-01 17 78346828 78346828 C T RNF213 Missense_Mutation p.R4269W 0.08 possibly_damaging(0.794) TCGA-D8-A1XK-01 17 79563140 79563140 A G NPLOC4 Splice_Site p.X374_splice 0.09 TCGA-D8-A1XK-01 17 79564290 79564290 A G NPLOC4 Missense_Mutation p.V325A 0.19 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 17 79663911 79663911 T G HGS Missense_Mutation p.F589V 0.24 tolerated(0.45) probably_damaging(0.916) TCGA-D8-A1XK-01 17 79684474 79684474 T C SLC25A10 Missense_Mutation p.Y194H 0.26 tolerated(0.27) benign(0.019) TCGA-D8-A1XK-01 17 80332655 80332655 T C UTS2R Missense_Mutation p.V152A 0.33 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 17 80350229 80350229 G C OGFOD3 3'UTR 0.25 TCGA-D8-A1XK-01 17 80403805 80403805 A C C17orf62 Missense_Mutation p.V78G 0.23 deleterious(0) possibly_damaging(0.628) TCGA-D8-A1XK-01 17 8049768 8049768 A G PER1 Missense_Mutation p.S654P 0.10 tolerated(0.19) probably_damaging(0.998) TCGA-D8-A1XK-01 17 80755680 80755680 T C TBCD Splice_Site p.X273_splice 0.20 TCGA-D8-A1XK-01 17 8480563 8480563 A G MYH10 Silent p.H208H 0.43 TCGA-D8-A1XK-01 17 910413 910413 T A ABR Missense_Mutation p.M828L 0.35 tolerated(0.14) possibly_damaging(0.869) TCGA-D8-A1XK-01 18 12718542 12718542 A G PSMG2 Silent p.K105K 0.16 TCGA-D8-A1XK-01 18 13666382 13666382 G A FAM210A 3'UTR 0.09 TCGA-D8-A1XK-01 18 23772429 23772429 A T PSMA8 3'UTR 0.53 TCGA-D8-A1XK-01 18 2732390 2732390 A G SMCHD1 Missense_Mutation p.N1059S 0.18 tolerated(0.57) benign(0.004) TCGA-D8-A1XK-01 18 30092416 30092416 C - WBP11P1 RNA 0.30 TCGA-D8-A1XK-01 18 30267120 30267120 T C KLHL14 Silent p.E412E 0.32 TCGA-D8-A1XK-01 18 3879223 3879223 C T DLGAP1 Silent p.T282T 0.27 TCGA-D8-A1XK-01 18 43432571 43432571 A G EPG5 Missense_Mutation p.V2534A 0.41 tolerated(0.65) benign(0.063) TCGA-D8-A1XK-01 18 46469025 46469025 A G SMAD7 Intron 0.43 TCGA-D8-A1XK-01 18 58038839 58038839 G T MC4R Silent p.T248T 0.24 TCGA-D8-A1XK-01 18 59166695 59166695 C T CDH20 Missense_Mutation p.P175S 0.28 deleterious(0.01) possibly_damaging(0.628) TCGA-D8-A1XK-01 18 60241727 60241727 A G ZCCHC2 Missense_Mutation p.T805A 0.29 tolerated(0.45) benign(0.001) TCGA-D8-A1XK-01 18 61569726 61569726 T A SERPINB2 Missense_Mutation p.L256H 0.29 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XK-01 18 674213 674213 T C ENOSF1 3'UTR 0.15 TCGA-D8-A1XK-01 18 74402396 74402396 C T AC034110.1 RNA 0.29 TCGA-D8-A1XK-01 18 9122508 9122508 T A NDUFV2 Intron 0.30 TCGA-D8-A1XK-01 19 10229396 10229396 C T EIF3G Missense_Mutation p.R83H 0.40 deleterious(0.05) probably_damaging(0.956) TCGA-D8-A1XK-01 19 10273383 10273383 A C DNMT1 Missense_Mutation p.V323G 0.08 tolerated(0.37) benign(0.109) TCGA-D8-A1XK-01 19 10795627 10795627 C A ILF3 Intron 0.18 TCGA-D8-A1XK-01 19 10799929 10799929 T C ILF3 Missense_Mutation p.S880P 0.26 tolerated_low_confidence(0.26) unknown(0) TCGA-D8-A1XK-01 19 1109171 1109171 A T SBNO2 Missense_Mutation p.Y1130N 0.21 deleterious(0) benign(0.318) TCGA-D8-A1XK-01 19 11132635 11132635 G - SMARCA4 Frame_Shift_Del p.E952Kfs*5 0.14 TCGA-D8-A1XK-01 19 11417283 11417283 A G TSPAN16 Missense_Mutation p.K152E 0.14 tolerated(0.08) benign(0.093) TCGA-D8-A1XK-01 19 12154701 12154701 T C ZNF878 Silent p.K505K 0.20 TCGA-D8-A1XK-01 19 12386769 12386769 A G ZNF44 Splice_Site p.X92_splice 0.32 TCGA-D8-A1XK-01 19 1255442 1255442 A T MIDN Missense_Mutation p.Q293L 0.28 deleterious(0) benign(0.009) TCGA-D8-A1XK-01 19 12691529 12691529 C T ZNF490 Missense_Mutation p.V454I 0.16 deleterious(0.02) possibly_damaging(0.577) TCGA-D8-A1XK-01 19 12692195 12692195 C T ZNF490 Missense_Mutation p.A232T 0.12 tolerated(0.58) benign(0.026) TCGA-D8-A1XK-01 19 12769127 12769127 C T MAN2B1 Missense_Mutation p.A381T 0.25 deleterious(0) probably_damaging(0.971) TCGA-D8-A1XK-01 19 13985568 13985568 G A NANOS3 5'Flank 0.12 TCGA-D8-A1XK-01 19 14262162 14262162 G A LPHN1 Silent p.G1316G 0.62 TCGA-D8-A1XK-01 19 14705311 14705311 T C CLEC17A Intron 0.23 TCGA-D8-A1XK-01 19 15366911 15366911 T - BRD4 Frame_Shift_Del p.K572Rfs*12 0.25 TCGA-D8-A1XK-01 19 1584612 1584612 A T MBD3 Missense_Mutation p.V112E 0.13 deleterious(0.03) probably_damaging(0.949) TCGA-D8-A1XK-01 19 16678976 16678976 T C SLC35E1 Missense_Mutation p.Y166C 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 19 17085906 17085906 C T CPAMD8 Splice_Site p.X737_splice 0.20 TCGA-D8-A1XK-01 19 17449407 17449407 A G GTPBP3 Missense_Mutation p.N150D 0.22 tolerated(0.23) benign(0.379) TCGA-D8-A1XK-01 19 18685757 18685757 A T UBA52 Missense_Mutation p.N90Y 0.17 deleterious(0) possibly_damaging(0.876) TCGA-D8-A1XK-01 19 19338231 19338231 A C NCAN Missense_Mutation p.D601A 0.28 tolerated(0.24) benign(0.002) TCGA-D8-A1XK-01 19 19414180 19414180 T C SUGP1 Missense_Mutation p.K247R 0.18 tolerated(0.98) benign(0.001) TCGA-D8-A1XK-01 19 1990817 1990817 C T BTBD2 Missense_Mutation p.R230Q 0.13 deleterious(0.05) possibly_damaging(0.903) TCGA-D8-A1XK-01 19 20308936 20308936 T - ZNF486 3'UTR 0.20 TCGA-D8-A1XK-01 19 21300912 21300912 A G ZNF714 Missense_Mutation p.K481R 0.30 tolerated(0.05) benign(0.035) TCGA-D8-A1XK-01 19 21607594 21607594 A G ZNF493 Silent p.K711K 0.29 TCGA-D8-A1XK-01 19 21720017 21720017 A - ZNF429 Frame_Shift_Del p.I390Ffs*? 0.18 TCGA-D8-A1XK-01 19 21934004 21934004 A G ZNF100 Intron 0.19 TCGA-D8-A1XK-01 19 2247002 2247002 A G SF3A2 Missense_Mutation p.Y176C 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.85) TCGA-D8-A1XK-01 19 2344416 2344416 T C SPPL2B RNA 0.37 TCGA-D8-A1XK-01 19 2717406 2717406 G A DIRAS1 Silent p.R133R 0.17 TCGA-D8-A1XK-01 19 2918316 2918316 A G ZNF57 3'UTR 0.22 TCGA-D8-A1XK-01 19 33222673 33222673 A G TDRD12 Missense_Mutation p.S23G 0.31 tolerated(0.88) benign(0.007) TCGA-D8-A1XK-01 19 33378730 33378730 A G CEP89 Silent p.S631S 0.25 TCGA-D8-A1XK-01 19 336129 336129 G A MIER2 Silent p.L18L 0.10 TCGA-D8-A1XK-01 19 35434150 35434150 A G ZNF30 Missense_Mutation p.I95V 0.08 tolerated(0.51) benign(0.002) TCGA-D8-A1XK-01 19 36128363 36128363 C T RBM42 Silent p.R450R 0.41 TCGA-D8-A1XK-01 19 36964231 36964231 T C ZNF566 Intron 0.24 TCGA-D8-A1XK-01 19 37309789 37309789 G A ZNF790 Missense_Mutation p.T486I 0.27 tolerated(0.07) possibly_damaging(0.812) TCGA-D8-A1XK-01 19 37382381 37382381 A G ZNF829 3'UTR 0.32 TCGA-D8-A1XK-01 19 38380339 38380339 T C WDR87 Silent p.E1285E 0.23 TCGA-D8-A1XK-01 19 38386920 38386920 A G WDR87 Missense_Mutation p.L35P 0.22 possibly_damaging(0.85) TCGA-D8-A1XK-01 19 38998429 38998429 G A RYR1 Missense_Mutation p.R2965H 0.31 benign(0.094) TCGA-D8-A1XK-01 19 39788881 39788881 G A IFNL1 Missense_Mutation p.R141K 0.22 tolerated(0.1) benign(0.02) TCGA-D8-A1XK-01 19 39915425 39915425 G T PLEKHG2 Nonsense_Mutation p.G1218* 0.30 TCGA-D8-A1XK-01 19 39959502 39959502 G C SUPT5H Splice_Site p.X381_splice 0.27 TCGA-D8-A1XK-01 19 40320999 40320999 G - DYRK1B Intron 0.25 TCGA-D8-A1XK-01 19 40540643 40540643 T C ZNF780B Missense_Mutation p.Y708C 0.27 tolerated(0.2) probably_damaging(0.98) TCGA-D8-A1XK-01 19 40580706 40580706 C T ZNF780A Missense_Mutation p.R549Q 0.09 tolerated(1) benign(0.004) TCGA-D8-A1XK-01 19 40902398 40902399 - T PRX Frame_Shift_Ins p.V621Sfs*13 0.20 TCGA-D8-A1XK-01 19 41095083 41095083 C T SHKBP1 Missense_Mutation p.R530W 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 19 41707175 41707175 A G CYP2S1 Missense_Mutation p.M292V 0.28 deleterious(0) benign(0.033) TCGA-D8-A1XK-01 19 41920064 41920064 T C BCKDHA Splice_Site p.X162_splice 0.28 TCGA-D8-A1XK-01 19 42351706 42351706 A T DMRTC2 Missense_Mutation p.K70N 0.35 tolerated(0.29) probably_damaging(0.999) TCGA-D8-A1XK-01 19 43233410 43233410 C G PSG3 Missense_Mutation p.G370R 0.28 deleterious(0.03) benign(0.434) TCGA-D8-A1XK-01 19 44065082 44065082 C T XRCC1 Missense_Mutation p.A79T 0.08 tolerated(0.67) benign(0.001) TCGA-D8-A1XK-01 19 44127494 44127494 T C CADM4 Silent p.E385E 0.29 TCGA-D8-A1XK-01 19 44636910 44636910 T C ZNF225 3'UTR 0.24 TCGA-D8-A1XK-01 19 44770442 44770442 T C ZNF233 Missense_Mutation p.V36A 0.06 deleterious(0) probably_damaging(0.987) TCGA-D8-A1XK-01 19 44792421 44792421 A G ZNF235 Silent p.D389D 0.30 TCGA-D8-A1XK-01 19 45404306 45404306 T C TOMM40 Missense_Mutation p.V263A 0.42 tolerated(1) benign(0.011) TCGA-D8-A1XK-01 19 45918179 45918179 G T ERCC1 Silent p.A214A 0.56 TCGA-D8-A1XK-01 19 46520507 46520507 G A CCDC61 Missense_Mutation p.G438D 0.36 tolerated(0.62) benign(0) TCGA-D8-A1XK-01 19 47653624 47653624 T C SAE1 Missense_Mutation p.F126L 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1XK-01 19 49644722 49644722 T C PPFIA3 Missense_Mutation p.L805P 0.44 tolerated(0.17) benign(0.328) TCGA-D8-A1XK-01 19 50387588 50387588 A G TBC1D17 Missense_Mutation p.D402G 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 19 50881064 50881064 G - NR1H2 Frame_Shift_Del p.G41Vfs*114 0.36 TCGA-D8-A1XK-01 19 51506263 51506263 A G KLK9 3'UTR 0.19 TCGA-D8-A1XK-01 19 52090234 52090234 G A ZNF175 Missense_Mutation p.S217N 0.26 tolerated(0.96) benign(0.002) TCGA-D8-A1XK-01 19 52567841 52567841 C T ZNF841 3'UTR 0.26 TCGA-D8-A1XK-01 19 52919283 52919283 A G ZNF528 Missense_Mutation p.K393R 0.13 tolerated(0.47) benign(0.136) TCGA-D8-A1XK-01 19 53612578 53612578 T C ZNF415 Silent p.G240G 0.07 TCGA-D8-A1XK-01 19 54567156 54567156 T - VSTM1 5'UTR 0.44 TCGA-D8-A1XK-01 19 55085971 55085971 G A LILRA2 Missense_Mutation p.A92T 0.28 tolerated(0.06) benign(0.06) TCGA-D8-A1XK-01 19 55525995 55525995 A G GP6 Missense_Mutation p.W440R 0.07 tolerated_low_confidence(0.29) benign(0) TCGA-D8-A1XK-01 19 56443489 56443489 G A NLRP13 Silent p.A63A 0.22 TCGA-D8-A1XK-01 19 56466176 56466176 C T NLRP8 Missense_Mutation p.T251M 0.10 tolerated(0.11) benign(0.025) TCGA-D8-A1XK-01 19 56520208 56520208 A - NLRP5 Frame_Shift_Del p.V168Cfs*72 0.20 TCGA-D8-A1XK-01 19 57327372 57327372 A G PEG3 Missense_Mutation p.I813T 0.33 tolerated(0.27) benign(0.007) TCGA-D8-A1XK-01 19 57765284 57765284 C T ZNF805 Missense_Mutation p.T366I 0.25 deleterious(0) possibly_damaging(0.848) TCGA-D8-A1XK-01 19 58018211 58018211 A G ZNF773 Missense_Mutation p.S250G 0.27 tolerated(0.36) benign(0.001) TCGA-D8-A1XK-01 19 58115681 58115681 T G ZNF530 Missense_Mutation p.F23V 0.28 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 19 58619426 58619426 C T ZSCAN18 Intron 0.27 TCGA-D8-A1XK-01 19 58846472 58846472 C - ZSCAN22 Frame_Shift_Del p.P103Qfs*25 0.21 TCGA-D8-A1XK-01 19 5914696 5914696 G A CAPS Nonsense_Mutation p.W69* 0.08 TCGA-D8-A1XK-01 19 6750563 6750563 A G TRIP10 Missense_Mutation p.I470V 0.25 tolerated(0.37) possibly_damaging(0.771) TCGA-D8-A1XK-01 19 804187 804187 G T PTBP1 Silent p.L89L 0.14 TCGA-D8-A1XK-01 19 814468 814468 C T LPPR3 Missense_Mutation p.G294D 0.20 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 19 8436257 8436257 A G ANGPTL4 Missense_Mutation p.D297G 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-D8-A1XK-01 19 9066859 9066859 T C MUC16 Missense_Mutation p.T6863A 0.15 unknown(0) TCGA-D8-A1XK-01 19 9077821 9077821 T C MUC16 Missense_Mutation p.M3209V 0.34 unknown(0) TCGA-D8-A1XK-01 19 9083271 9083271 T C MUC16 Missense_Mutation p.I2848M 0.37 unknown(0) TCGA-D8-A1XK-01 19 9721399 9721399 T C ZNF561 Missense_Mutation p.Y313C 0.23 deleterious(0) possibly_damaging(0.7) TCGA-D8-A1XK-01 19 9870543 9870543 A G ZNF846 Missense_Mutation p.V102A 0.10 deleterious(0.03) benign(0.013) TCGA-D8-A1XK-01 1 100203640 100203640 A C FRRS1 Splice_Site p.X253_splice 0.28 TCGA-D8-A1XK-01 1 109270535 109270535 T C FNDC7 Missense_Mutation p.V406A 0.05 tolerated(1) benign(0.001) TCGA-D8-A1XK-01 1 109427989 109427989 A G GPSM2 5'UTR 0.40 TCGA-D8-A1XK-01 1 109466838 109466838 T C GPSM2 Splice_Site p.X605_splice 0.25 TCGA-D8-A1XK-01 1 109472189 109472189 A T CLCC1 3'UTR 0.27 TCGA-D8-A1XK-01 1 109472600 109472600 A T GPSM2 3'UTR 0.19 TCGA-D8-A1XK-01 1 109779110 109779110 G A SARS Silent p.T399T 0.27 TCGA-D8-A1XK-01 1 109780392 109780392 T A SARS Missense_Mutation p.I476N 0.22 deleterious(0.03) probably_damaging(0.924) TCGA-D8-A1XK-01 1 114308901 114308901 A T RSBN1 Missense_Mutation p.Y704N 0.06 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 1 114940167 114940167 G A TRIM33 3'UTR 0.22 TCGA-D8-A1XK-01 1 12065914 12065914 G A MFN2 Missense_Mutation p.G548R 0.12 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 1 1256437 1256437 A G CPSF3L Missense_Mutation p.V28A 0.42 tolerated(0.1) possibly_damaging(0.596) TCGA-D8-A1XK-01 1 143767699 143767699 A G PPIAL4G Silent p.G50G 0.17 TCGA-D8-A1XK-01 1 149943110 149943110 A G OTUD7B Missense_Mutation p.L52P 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-D8-A1XK-01 1 150234561 150234561 A G CA14 Silent p.Q87Q 0.19 TCGA-D8-A1XK-01 1 150310652 150310652 T A PRPF3 Missense_Mutation p.L351Q 0.14 deleterious(0) probably_damaging(0.988) TCGA-D8-A1XK-01 1 151090650 151090651 - AG GABPB2 Frame_Shift_Ins p.T426Rfs*4 0.09 TCGA-D8-A1XK-01 1 151259992 151259992 G A ZNF687 Missense_Mutation p.A409T 0.11 deleterious(0) possibly_damaging(0.777) TCGA-D8-A1XK-01 1 151262327 151262328 - C ZNF687 Frame_Shift_Ins p.R939Pfs*36 0.18 TCGA-D8-A1XK-01 1 151265237 151265237 A G PI4KB 3'UTR 0.17 TCGA-D8-A1XK-01 1 151958689 151958689 T C S100A10 Silent p.E6E 0.16 TCGA-D8-A1XK-01 1 151994979 151994979 C - NBPF18P RNA 0.26 TCGA-D8-A1XK-01 1 152733330 152733330 T C KPRP Silent p.P422P 0.23 TCGA-D8-A1XK-01 1 152857068 152857068 A G SMCP Missense_Mutation p.H57R 0.13 tolerated(0.67) benign(0.402) TCGA-D8-A1XK-01 1 153914686 153914686 G A DENND4B Missense_Mutation p.L263F 0.21 deleterious(0) possibly_damaging(0.644) TCGA-D8-A1XK-01 1 153956014 153956014 A G RAB13 Missense_Mutation p.Y77H 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 1 154528431 154528431 G T UBE2Q1 Missense_Mutation p.P113T 0.22 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XK-01 1 154680437 154680437 A T KCNN3 3'UTR 0.15 TCGA-D8-A1XK-01 1 154999032 154999032 A T DCST2 Missense_Mutation p.I501K 0.25 deleterious(0.04) benign(0.039) TCGA-D8-A1XK-01 1 155018561 155018561 G T DCST1 Intron 0.23 TCGA-D8-A1XK-01 1 155236644 155236644 G T CLK2 Missense_Mutation p.H237Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 1 155290947 155290947 C T RUSC1 Intron 0.13 TCGA-D8-A1XK-01 1 155294982 155294982 G - RUSC1 Intron 0.24 TCGA-D8-A1XK-01 1 155631112 155631112 G A YY1AP1 Missense_Mutation p.P466S 0.20 deleterious(0) probably_damaging(0.982) TCGA-D8-A1XK-01 1 155884014 155884014 A T KIAA0907 Missense_Mutation p.H581Q 0.24 tolerated_low_confidence(0.17) benign(0.301) TCGA-D8-A1XK-01 1 155936205 155936205 A G ARHGEF2 Splice_Site p.X114_splice 0.10 TCGA-D8-A1XK-01 1 156278916 156278916 T C CCT3 3'UTR 0.19 TCGA-D8-A1XK-01 1 156314450 156314450 T C TSACC Silent p.S38S 0.14 TCGA-D8-A1XK-01 1 156498340 156498340 T - IQGAP3 Frame_Shift_Del p.K1545Rfs*33 0.16 TCGA-D8-A1XK-01 1 156639821 156639821 C T NES Missense_Mutation p.A1387T 0.22 tolerated(0.17) benign(0.035) TCGA-D8-A1XK-01 1 156910105 156910105 T C ARHGEF11 Silent p.T1209T 0.14 TCGA-D8-A1XK-01 1 156921363 156921363 A G ARHGEF11 Splice_Site p.X642_splice 0.14 TCGA-D8-A1XK-01 1 158639290 158639290 A T SPTA1 Missense_Mutation p.S581T 0.20 deleterious(0.01) possibly_damaging(0.624) TCGA-D8-A1XK-01 1 158990208 158990208 A G IFI16 Silent p.Q350Q 0.26 TCGA-D8-A1XK-01 1 159170702 159170702 A G CADM3 Missense_Mutation p.Y430C 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 1 159904032 159904032 G - IGSF9 Frame_Shift_Del p.P351Hfs*30 0.22 TCGA-D8-A1XK-01 1 160054403 160054403 T A KCNJ9 Missense_Mutation p.L195M 0.24 tolerated(0.26) probably_damaging(1) TCGA-D8-A1XK-01 1 160168503 160168503 G A CASQ1 Missense_Mutation p.A289T 0.12 deleterious(0) possibly_damaging(0.817) TCGA-D8-A1XK-01 1 161137815 161137815 C A PPOX Silent p.S123S 0.21 TCGA-D8-A1XK-01 1 161143627 161143627 A T B4GALT3 Intron 0.21 TCGA-D8-A1XK-01 1 161202978 161202978 T G NR1I3 Missense_Mutation p.E130A 0.08 tolerated(0.18) benign(0.026) TCGA-D8-A1XK-01 1 165721405 165721405 A G TMCO1 Missense_Mutation p.V137A 0.13 tolerated(0.19) benign(0.053) TCGA-D8-A1XK-01 1 165875172 165875172 T C UCK2 Silent p.A204A 0.25 TCGA-D8-A1XK-01 1 1670469 1670469 A C SLC35E2 Missense_Mutation p.V117G 0.18 deleterious(0) possibly_damaging(0.491) TCGA-D8-A1XK-01 1 167511387 167511387 A T CREG1 3'UTR 0.22 TCGA-D8-A1XK-01 1 16757876 16757876 G A SPATA21 5'UTR 0.41 TCGA-D8-A1XK-01 1 17017757 17017757 G A ESPNP RNA 0.09 TCGA-D8-A1XK-01 1 172571219 172571219 A C SUCO Missense_Mutation p.S1012R 0.21 deleterious(0.01) possibly_damaging(0.824) TCGA-D8-A1XK-01 1 173593947 173593947 A G ANKRD45 Missense_Mutation p.F237L 0.27 tolerated(1) benign(0.003) TCGA-D8-A1XK-01 1 173780442 173780442 T C CENPL Intron 0.22 TCGA-D8-A1XK-01 1 173802617 173802617 A G DARS2 Missense_Mutation p.E199G 0.10 deleterious(0) benign(0.248) TCGA-D8-A1XK-01 1 173802620 173802620 A T DARS2 Missense_Mutation p.Y200F 0.11 tolerated(0.29) benign(0.06) TCGA-D8-A1XK-01 1 173962098 173962098 G T RC3H1 Missense_Mutation p.T9K 0.18 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 1 17409045 17409045 G A PADI2 Missense_Mutation p.L385F 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-D8-A1XK-01 1 174219767 174219767 T C RABGAP1L Missense_Mutation p.F291S 0.28 deleterious(0) probably_damaging(0.974) TCGA-D8-A1XK-01 1 17735381 17735381 A - RCC2 3'UTR 0.33 TCGA-D8-A1XK-01 1 177898979 177898979 A G SEC16B 3'UTR 0.21 TCGA-D8-A1XK-01 1 178427180 178427180 A G RASAL2 Missense_Mutation p.Q918R 0.20 tolerated(0.36) benign(0.019) TCGA-D8-A1XK-01 1 17914103 17914103 C - ARHGEF10L Frame_Shift_Del p.P64Hfs*2 0.35 TCGA-D8-A1XK-01 1 179587762 179587762 C T TDRD5 Missense_Mutation p.A287V 0.12 tolerated(0.15) benign(0.17) TCGA-D8-A1XK-01 1 179985072 179985072 T A CEP350 Missense_Mutation p.M714K 0.18 possibly_damaging(0.501) TCGA-D8-A1XK-01 1 180905640 180905640 C T KIAA1614 Silent p.S865S 0.20 TCGA-D8-A1XK-01 1 1849175 1849175 G A TMEM52 3'UTR 0.50 TCGA-D8-A1XK-01 1 185947023 185947023 T C HMCN1 Missense_Mutation p.W826R 0.10 probably_damaging(0.996) TCGA-D8-A1XK-01 1 186314830 186314830 T C TPR Splice_Site p.X1033_splice 0.23 TCGA-D8-A1XK-01 1 192992983 192992983 T C UCHL5 Silent p.Q241Q 0.05 TCGA-D8-A1XK-01 1 19578307 19578307 C T MRTO4 5'UTR 0.38 TCGA-D8-A1XK-01 1 197112585 197112585 A G ASPM Missense_Mutation p.V266A 0.08 deleterious(0.01) benign(0.014) TCGA-D8-A1XK-01 1 200584711 200584711 A G KIF14 Missense_Mutation p.V380A 0.17 tolerated(0.07) benign(0.4) TCGA-D8-A1XK-01 1 200817995 200817995 A G CAMSAP2 Missense_Mutation p.T700A 0.28 tolerated(0.55) benign(0.003) TCGA-D8-A1XK-01 1 202287366 202287366 T C LGR6 Silent p.T645T 0.26 TCGA-D8-A1XK-01 1 202398059 202398059 T C PPP1R12B Splice_Site p.X307_splice 0.17 TCGA-D8-A1XK-01 1 203690370 203690370 A G ATP2B4 Missense_Mutation p.M882V 0.13 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 1 203786220 203786220 T C ZC3H11A Missense_Mutation p.C8R 0.25 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 1 204161941 204161941 A T KISS1 Missense_Mutation p.L22I 0.15 tolerated(0.47) possibly_damaging(0.801) TCGA-D8-A1XK-01 1 205126412 205126412 T C DSTYK Missense_Mutation p.K781E 0.16 deleterious(0) probably_damaging(0.919) TCGA-D8-A1XK-01 1 205499815 205499815 T C CDK18 Silent p.L488L 0.23 TCGA-D8-A1XK-01 1 205633797 205633797 G A SLC45A3 5'UTR 0.30 TCGA-D8-A1XK-01 1 206619535 206619535 C T SRGAP2 Silent p.H577H 0.17 TCGA-D8-A1XK-01 1 206906070 206906070 G A MAPKAPK2 3'UTR 0.14 TCGA-D8-A1XK-01 1 207241610 207241610 G T PFKFB2 Missense_Mutation p.G315W 0.21 probably_damaging(0.998) TCGA-D8-A1XK-01 1 20964396 20964396 G T PINK1 Missense_Mutation p.G150V 0.35 deleterious(0.03) probably_damaging(1) TCGA-D8-A1XK-01 1 214507374 214507374 A G SMYD2 Intron 0.18 TCGA-D8-A1XK-01 1 220300110 220300110 T C IARS2 Silent p.L588L 0.29 TCGA-D8-A1XK-01 1 22160416 22160416 A G HSPG2 Silent p.L3575L 0.41 TCGA-D8-A1XK-01 1 222825650 222825650 T A MIA3 Silent p.A1354A 0.31 TCGA-D8-A1XK-01 1 223962584 223962584 C A CAPN2 3'UTR 0.32 TCGA-D8-A1XK-01 1 225445697 225445697 G A DNAH14 Missense_Mutation p.G2295R 0.12 benign(0.056) TCGA-D8-A1XK-01 1 225605767 225605767 C G LBR Missense_Mutation p.E252D 0.21 tolerated(1) benign(0.002) TCGA-D8-A1XK-01 1 225700686 225700686 A G ENAH Silent p.N417N 0.33 TCGA-D8-A1XK-01 1 226259174 226259174 T C H3F3A Silent p.R135R 0.10 TCGA-D8-A1XK-01 1 226570735 226570735 A G PARP1 Splice_Site p.X387_splice 0.09 TCGA-D8-A1XK-01 1 228527714 228527714 C T OBSCN Missense_Mutation p.A6733V 0.09 benign(0.184) TCGA-D8-A1XK-01 1 228529193 228529193 T C OBSCN Missense_Mutation p.V6928A 0.29 possibly_damaging(0.529) TCGA-D8-A1XK-01 1 229631263 229631263 T C NUP133 Missense_Mutation p.Y342C 0.21 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XK-01 1 230975527 230975527 T - C1orf198 3'UTR 0.12 TCGA-D8-A1XK-01 1 231954269 231954269 T C DISC1 Intron 0.22 TCGA-D8-A1XK-01 1 23219497 23219497 G A EPHB2 Missense_Mutation p.G517R 0.24 deleterious(0) probably_damaging(0.98) TCGA-D8-A1XK-01 1 232942880 232942880 A G MAP10 Missense_Mutation p.Y704C 0.31 tolerated(0.27) benign(0.006) TCGA-D8-A1XK-01 1 235505913 235505913 A - GGPS1 Frame_Shift_Del p.K245Nfs*10 0.17 TCGA-D8-A1XK-01 1 235904748 235904748 G C LYST Missense_Mutation p.R2778G 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-D8-A1XK-01 1 236714266 236714266 T C HEATR1 Missense_Mutation p.Q2124R 0.15 deleterious(0.01) possibly_damaging(0.758) TCGA-D8-A1XK-01 1 237551389 237551389 T C RYR2 Missense_Mutation p.Y227H 0.08 benign(0.291) TCGA-D8-A1XK-01 1 237780728 237780728 T C RYR2 Missense_Mutation p.M1953T 0.12 probably_damaging(0.997) TCGA-D8-A1XK-01 1 237893593 237893593 T C RYR2 Silent p.Y3624Y 0.13 TCGA-D8-A1XK-01 1 24393521 24393521 A G MYOM3 Missense_Mutation p.L1138P 0.33 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XK-01 1 245583020 245583020 C T KIF26B Missense_Mutation p.T380I 0.28 deleterious(0.04) unknown(0) TCGA-D8-A1XK-01 1 246755180 246755180 A - CNST Frame_Shift_Del p.I108Ffs*29 0.18 TCGA-D8-A1XK-01 1 247012977 247012977 A T AHCTF1 Missense_Mutation p.S2120T 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-D8-A1XK-01 1 247030635 247030635 T C AHCTF1 Silent p.P1095P 0.13 TCGA-D8-A1XK-01 1 248616098 248616098 C T OR2T2 5'UTR 0.17 TCGA-D8-A1XK-01 1 249151665 249151665 C A ZNF692 Missense_Mutation p.Q86H 0.16 tolerated(0.06) possibly_damaging(0.766) TCGA-D8-A1XK-01 1 26440821 26440821 T A PDIK1L Missense_Mutation p.Y8N 0.48 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 1 27706607 27706607 C T CD164L2 Missense_Mutation p.S151N 0.33 deleterious(0.03) probably_damaging(0.982) TCGA-D8-A1XK-01 1 32384735 32384735 A T PTP4A2 5'UTR 0.35 TCGA-D8-A1XK-01 1 33248059 33248059 T C YARS Missense_Mutation p.T330A 0.22 tolerated(0.34) benign(0) TCGA-D8-A1XK-01 1 36367604 36367604 T C AGO1 Missense_Mutation p.V399A 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-D8-A1XK-01 1 36521270 36521270 A T AGO3 Missense_Mutation p.N836I 0.08 tolerated(0.19) possibly_damaging(0.635) TCGA-D8-A1XK-01 1 36551436 36551436 G C TEKT2 Splice_Site p.X95_splice 0.33 TCGA-D8-A1XK-01 1 36636587 36636587 C - MAP7D1 Frame_Shift_Del p.P23Qfs*33 0.39 TCGA-D8-A1XK-01 1 36752133 36752133 G C THRAP3 Missense_Mutation p.R101P 0.21 deleterious(0.01) unknown(0) TCGA-D8-A1XK-01 1 3692506 3692506 G - SMIM1 3'UTR 0.36 TCGA-D8-A1XK-01 1 38003172 38003172 T C SNIP1 3'UTR 0.19 TCGA-D8-A1XK-01 1 38034680 38034680 A G GNL2 Missense_Mutation p.L547P 0.31 deleterious(0) probably_damaging(0.91) TCGA-D8-A1XK-01 1 3806442 3806442 A T C1orf174 3'UTR 0.10 TCGA-D8-A1XK-01 1 38463128 38463128 T C FHL3 Silent p.V264V 0.26 TCGA-D8-A1XK-01 1 39877269 39877269 A T KIAA0754 Silent p.S308S 0.26 TCGA-D8-A1XK-01 1 40735712 40735712 T C ZMPSTE24 Silent p.P180P 0.23 TCGA-D8-A1XK-01 1 40881847 40881847 G T SMAP2 Splice_Site p.X228_splice 0.20 TCGA-D8-A1XK-01 1 41285020 41285020 A G KCNQ4 Missense_Mutation p.E237G 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-D8-A1XK-01 1 43296401 43296401 C T ERMAP Intron 0.30 TCGA-D8-A1XK-01 1 43777766 43777766 T C TIE1 Missense_Mutation p.W532R 0.09 tolerated(0.56) benign(0.004) TCGA-D8-A1XK-01 1 44058239 44058239 A G PTPRF Missense_Mutation p.T594A 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1XK-01 1 46521525 46521525 T - PIK3R3 Frame_Shift_Del p.M295* 0.22 TCGA-D8-A1XK-01 1 47842556 47842556 T C CMPK1 3'UTR 0.30 TCGA-D8-A1XK-01 1 48705123 48705123 C A SLC5A9 Missense_Mutation p.L556M 0.26 tolerated(0.06) probably_damaging(0.988) TCGA-D8-A1XK-01 1 50572059 50572059 A G ELAVL4 Silent p.S18S 0.29 TCGA-D8-A1XK-01 1 51866605 51866605 G T EPS15 Missense_Mutation p.P635T 0.12 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 1 51869127 51869127 A T EPS15 Silent p.V585V 0.21 TCGA-D8-A1XK-01 1 52878256 52878256 A G PRPF38A Missense_Mutation p.D190G 0.30 tolerated(0.05) possibly_damaging(0.87) TCGA-D8-A1XK-01 1 63876980 63876980 A T ALG6 Nonsense_Mutation p.K220* 0.24 TCGA-D8-A1XK-01 1 71418439 71418439 C A PTGER3 3'UTR 0.28 TCGA-D8-A1XK-01 1 78181537 78181537 G T USP33 Silent p.A676A 0.35 TCGA-D8-A1XK-01 1 78201758 78201760 TCT - USP33 In_Frame_Del p.E176del 0.09 TCGA-D8-A1XK-01 1 85551637 85551637 A G WDR63 Missense_Mutation p.T222A 0.26 deleterious(0.04) benign(0.002) TCGA-D8-A1XK-01 1 85733330 85733330 G A BCL10 Missense_Mutation p.R228C 0.23 deleterious(0) possibly_damaging(0.513) TCGA-D8-A1XK-01 1 87538857 87538857 T C HS2ST1 Splice_Site p.X121_splice 0.30 TCGA-D8-A1XK-01 1 89524600 89524633 GAAATCTCTCAGTGTCCACACAAAGTCTGGGAAG - GBP1 Frame_Shift_Del p.F175Pfs*17 0.22 TCGA-D8-A1XK-01 1 94342893 94342893 T C DNTTIP2 Missense_Mutation p.T200A 0.33 tolerated(0.44) benign(0.006) TCGA-D8-A1XK-01 20 13145424 13145424 G T SPTLC3 Missense_Mutation p.M523I 0.39 tolerated(0.56) benign(0) TCGA-D8-A1XK-01 20 13856681 13856681 T C SEL1L2 Intron 0.33 TCGA-D8-A1XK-01 20 1552369 1552369 G A SIRPB1 Nonsense_Mutation p.R250* 0.29 TCGA-D8-A1XK-01 20 17462282 17462282 A C PCSK2 Missense_Mutation p.E495A 0.10 tolerated(0.86) benign(0.012) TCGA-D8-A1XK-01 20 18131569 18131569 T - CSRP2BP Frame_Shift_Del p.L163Yfs*2 0.29 TCGA-D8-A1XK-01 20 18165347 18165347 T C CSRP2BP Missense_Mutation p.Y696H 0.41 deleterious(0) possibly_damaging(0.574) TCGA-D8-A1XK-01 20 1961210 1961210 T C PDYN Missense_Mutation p.Y175C 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 20 23350233 23350233 A G GZF1 Missense_Mutation p.Y547C 0.52 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XK-01 20 30193854 30193854 A G ID1 Splice_Site p.X143_splice 0.31 TCGA-D8-A1XK-01 20 3028480 3028480 G T MRPS26 Missense_Mutation p.G195W 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 20 30534319 30534319 T C PDRG1 Missense_Mutation p.N100S 0.33 tolerated(0.25) benign(0.004) TCGA-D8-A1XK-01 20 3686992 3686992 A G SIGLEC1 Splice_Site p.X137_splice 0.28 TCGA-D8-A1XK-01 20 39990972 39990972 C T EMILIN3 Missense_Mutation p.G413S 0.44 tolerated(1) benign(0.002) TCGA-D8-A1XK-01 20 40049624 40049624 A G CHD6 Missense_Mutation p.M1884T 0.09 tolerated_low_confidence(0.37) benign(0) TCGA-D8-A1XK-01 20 43836194 43836194 G C SEMG1 Missense_Mutation p.D86H 0.38 tolerated(0.07) possibly_damaging(0.73) TCGA-D8-A1XK-01 20 44519135 44519135 C A NEURL2 Missense_Mutation p.G166W 0.33 deleterious(0) possibly_damaging(0.885) TCGA-D8-A1XK-01 20 49214207 49214207 A G FAM65C Missense_Mutation p.L563P 0.38 deleterious(0.03) probably_damaging(0.985) TCGA-D8-A1XK-01 20 52198048 52198048 C A ZNF217 Missense_Mutation p.G440C 0.11 deleterious(0.05) probably_damaging(0.98) TCGA-D8-A1XK-01 20 54978696 54978696 A G CSTF1 Missense_Mutation p.I403M 0.24 tolerated(0.05) possibly_damaging(0.511) TCGA-D8-A1XK-01 20 5528275 5528275 A T GPCPD1 3'UTR 0.45 TCGA-D8-A1XK-01 20 5528310 5528310 A G GPCPD1 Silent p.A672A 0.46 TCGA-D8-A1XK-01 20 5585082 5585082 T A GPCPD1 5'UTR 0.20 TCGA-D8-A1XK-01 20 56073727 56073727 T C CTCFL Missense_Mutation p.K624R 0.11 tolerated(0.56) benign(0.004) TCGA-D8-A1XK-01 20 6012717 6012717 C A CRLS1 Missense_Mutation p.F240L 0.41 tolerated(0.45) benign(0.032) TCGA-D8-A1XK-01 20 60528663 60528663 C T MIR1257 RNA 0.24 TCGA-D8-A1XK-01 20 60904938 60904938 G A LAMA5 Silent p.Y1338Y 0.57 TCGA-D8-A1XK-01 20 60906104 60906104 C T LAMA5 Missense_Mutation p.A1212T 0.25 benign(0.041) TCGA-D8-A1XK-01 20 61542836 61542836 C T DIDO1 Silent p.A43A 0.30 TCGA-D8-A1XK-01 20 62065196 62065196 A G KCNQ2 Missense_Mutation p.Y362H 0.30 tolerated(0.13) benign(0.039) TCGA-D8-A1XK-01 20 62236137 62236137 G A GMEB2 Missense_Mutation p.A63V 0.39 tolerated(0.39) benign(0.028) TCGA-D8-A1XK-01 20 62374284 62374284 C T SLC2A4RG Missense_Mutation p.R369W 0.27 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 20 62659902 62659902 T A PRPF6 Missense_Mutation p.L804Q 0.23 deleterious(0) possibly_damaging(0.86) TCGA-D8-A1XK-01 21 10934985 10934985 A G TPTE Missense_Mutation p.F270L 0.06 deleterious(0.03) probably_damaging(0.971) TCGA-D8-A1XK-01 21 15588559 15588559 G C RBM11 Missense_Mutation p.E18Q 0.18 deleterious(0.05) probably_damaging(0.911) TCGA-D8-A1XK-01 21 19165571 19165571 T C C21orf91 3'UTR 0.35 TCGA-D8-A1XK-01 21 19666640 19666640 G A TMPRSS15 Silent p.G811G 0.10 TCGA-D8-A1XK-01 21 27840791 27840791 T C CYYR1 3'UTR 0.21 TCGA-D8-A1XK-01 21 30339479 30339479 A C LTN1 Missense_Mutation p.V491G 0.29 deleterious(0.01) benign(0.392) TCGA-D8-A1XK-01 21 30411849 30411849 T C USP16 Missense_Mutation p.L304P 0.07 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 21 31802706 31802706 C A KRTAP13-4 Missense_Mutation p.P38H 0.22 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 21 31913972 31913972 T - KRTAP19-6 3'UTR 0.29 TCGA-D8-A1XK-01 21 33746080 33746080 A G URB1 Missense_Mutation p.V251A 0.34 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XK-01 21 34922290 34922290 T C SON Silent p.P251P 0.31 TCGA-D8-A1XK-01 21 34926937 34926937 C T SON Silent p.H1800H 0.24 TCGA-D8-A1XK-01 21 35275852 35275852 C A ATP5O Missense_Mutation p.R207M 0.24 deleterious(0.01) possibly_damaging(0.759) TCGA-D8-A1XK-01 21 40569035 40569035 A G BRWD1 Missense_Mutation p.V1987A 0.08 tolerated_low_confidence(0.88) benign(0.138) TCGA-D8-A1XK-01 21 40778156 40778156 T C LCA5L Silent p.T555T 0.26 TCGA-D8-A1XK-01 21 44323880 44323880 A G NDUFV3 Missense_Mutation p.Q253R 0.24 tolerated(0.16) benign(0.063) TCGA-D8-A1XK-01 21 45194018 45194018 C T CSTB 3'UTR 0.26 TCGA-D8-A1XK-01 21 45994019 45994019 C T KRTAP10-4 Silent p.V128V 0.31 TCGA-D8-A1XK-01 21 46896297 46896297 A G COL18A1 Silent p.P457P 0.25 TCGA-D8-A1XK-01 21 47706935 47706935 C T YBEY Silent p.D36D 0.27 TCGA-D8-A1XK-01 22 18378067 18378067 A G MICAL3 Missense_Mutation p.F478L 0.08 possibly_damaging(0.855) TCGA-D8-A1XK-01 22 21304061 21304061 C T CRKL Silent p.N280N 0.08 TCGA-D8-A1XK-01 22 22730663 22730663 G T IGLV5-45 Missense_Mutation p.R53M 0.31 tolerated(0.21) benign(0.254) TCGA-D8-A1XK-01 22 24313605 24313605 A G DDT 3'UTR 0.38 TCGA-D8-A1XK-01 22 24562925 24562925 A G CABIN1 Missense_Mutation p.T1776A 0.25 tolerated_low_confidence(0.41) benign(0) TCGA-D8-A1XK-01 22 24656980 24656980 G A POM121L9P RNA 0.31 TCGA-D8-A1XK-01 22 30415722 30415722 A G MTMR3 Missense_Mutation p.I692V 0.29 tolerated(0.06) probably_damaging(0.992) TCGA-D8-A1XK-01 22 30730502 30730503 - G SF3A1 3'UTR 0.16 TCGA-D8-A1XK-01 22 30736331 30736331 T C SF3A1 Missense_Mutation p.Y410C 0.32 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 22 30775714 30775714 T A RNF215 Missense_Mutation p.K366I 0.11 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 22 31493273 31493273 T C SMTN Missense_Mutation p.M703T 0.27 tolerated(0.57) benign(0) TCGA-D8-A1XK-01 22 32586740 32586741 - T RFPL2 3'UTR 0.30 TCGA-D8-A1XK-01 22 36700141 36700141 G A MYH9 Missense_Mutation p.R764C 0.37 probably_damaging(1) TCGA-D8-A1XK-01 22 38039709 38039709 A G SH3BP1 Missense_Mutation p.S178G 0.08 tolerated(0.33) benign(0.029) TCGA-D8-A1XK-01 22 38694881 38694881 G C CSNK1E Missense_Mutation p.D265E 0.24 deleterious_low_confidence(0.01) benign(0.049) TCGA-D8-A1XK-01 22 39137537 39137537 A T SUN2 Missense_Mutation p.S391T 0.11 tolerated(0.39) benign(0.004) TCGA-D8-A1XK-01 22 40283459 40283459 A G ENTHD1 Silent p.C98C 0.45 TCGA-D8-A1XK-01 22 40661353 40661353 A - TNRC6B Frame_Shift_Del p.N375Mfs*7 0.23 TCGA-D8-A1XK-01 22 41568658 41568658 A T EP300 Missense_Mutation p.E1536D 0.46 benign(0.444) TCGA-D8-A1XK-01 22 42043008 42043008 A T XRCC6 Missense_Mutation p.E294D 0.08 deleterious(0.02) possibly_damaging(0.787) TCGA-D8-A1XK-01 22 43607017 43607023 TGGTAGG - SCUBE1 Frame_Shift_Del p.T763Sfs*93 0.45 TCGA-D8-A1XK-01 22 45946477 45946477 A G FBLN1 Missense_Mutation p.Y560C 0.41 deleterious(0) probably_damaging(0.98) TCGA-D8-A1XK-01 22 46669876 46669876 C A TTC38 Missense_Mutation p.A92D 0.43 tolerated(0.5) benign(0.012) TCGA-D8-A1XK-01 22 46762904 46762904 C T CELSR1 Missense_Mutation p.A2731T 0.57 tolerated(0.11) benign(0.408) TCGA-D8-A1XK-01 22 51043991 51043991 T C MAPK8IP2 Missense_Mutation p.F614L 0.50 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XK-01 2 101911394 101911394 T C RNF149 Missense_Mutation p.Q237R 0.44 deleterious(0.02) benign(0.424) TCGA-D8-A1XK-01 2 10712055 10712055 T C NOL10 3'UTR 0.30 TCGA-D8-A1XK-01 2 109087914 109087914 T - GCC2 Frame_Shift_Del p.L712Cfs*16 0.19 TCGA-D8-A1XK-01 2 111417597 111417597 T C BUB1 Missense_Mutation p.T412A 0.30 tolerated(0.22) benign(0.004) TCGA-D8-A1XK-01 2 11696749 11696749 T C GREB1 Silent p.N3N 0.33 TCGA-D8-A1XK-01 2 11752468 11752468 T G GREB1 Intron 0.31 TCGA-D8-A1XK-01 2 122519072 122519072 T C TSN Silent p.T115T 0.19 TCGA-D8-A1XK-01 2 135779315 135779315 G A MAP3K19 Silent p.N36N 0.28 TCGA-D8-A1XK-01 2 136873066 136873066 A T CXCR4 Missense_Mutation p.S148R 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 2 141460086 141460086 A G LRP1B Silent p.C2020C 0.31 TCGA-D8-A1XK-01 2 149447914 149447914 A T EPC2 Missense_Mutation p.K95N 0.19 deleterious(0) probably_damaging(0.944) TCGA-D8-A1XK-01 2 152324612 152324612 T G RIF1 Missense_Mutation p.S2233R 0.26 tolerated(0.12) possibly_damaging(0.467) TCGA-D8-A1XK-01 2 152432754 152432754 G A NEB Missense_Mutation p.R5607W 0.19 probably_damaging(1) TCGA-D8-A1XK-01 2 157185038 157185038 A G NR4A2 Missense_Mutation p.V291A 0.13 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 2 158300407 158300407 A G CYTIP Silent p.I42I 0.33 TCGA-D8-A1XK-01 2 160007062 160007062 T A TANC1 Missense_Mutation p.I226N 0.30 deleterious(0) possibly_damaging(0.655) TCGA-D8-A1XK-01 2 160189132 160189132 T C BAZ2B Silent p.K1954K 0.23 TCGA-D8-A1XK-01 2 160711424 160711424 A G LY75-CD302 Missense_Mutation p.Y804H 0.13 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 2 160901313 160901313 A G PLA2R1 Silent p.G155G 0.14 TCGA-D8-A1XK-01 2 161055738 161055738 A G ITGB6 Silent p.C31C 0.27 TCGA-D8-A1XK-01 2 161055750 161055750 A T ITGB6 Silent p.G27G 0.07 TCGA-D8-A1XK-01 2 163027347 163027347 T - FAP 3'UTR 0.21 TCGA-D8-A1XK-01 2 1652601 1652601 A G PXDN Missense_Mutation p.L984P 0.25 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 2 170031820 170031820 G A LRP2 Missense_Mutation p.R3551C 0.07 probably_damaging(1) TCGA-D8-A1XK-01 2 170753213 170753213 T C UBR3 Missense_Mutation p.M478T 0.20 deleterious(0) possibly_damaging(0.885) TCGA-D8-A1XK-01 2 170936530 170936530 A G UBR3 Silent p.V1802V 0.25 TCGA-D8-A1XK-01 2 174945897 174945897 G A OLA1 Missense_Mutation p.R317C 0.11 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 2 176804278 176804278 A G KIAA1715 Splice_Site p.X271_splice 0.16 TCGA-D8-A1XK-01 2 178416149 178416149 C T TTC30B Missense_Mutation p.R448H 0.04 tolerated(0.11) benign(0.03) TCGA-D8-A1XK-01 2 179433320 179433320 T A TTN Missense_Mutation p.T25847S 0.28 TCGA-D8-A1XK-01 2 179554018 179554018 T - TTN Frame_Shift_Del p.V10671Cfs*37 0.10 TCGA-D8-A1XK-01 2 181927669 181927669 T A UBE2E3 3'UTR 0.13 TCGA-D8-A1XK-01 2 201515914 201515914 C A AOX1 Missense_Mutation p.A1022D 0.07 deleterious(0.02) possibly_damaging(0.756) TCGA-D8-A1XK-01 2 204022515 204022515 T A NBEAL1 Missense_Mutation p.L1865H 0.26 deleterious(0.02) probably_damaging(0.945) TCGA-D8-A1XK-01 2 206874446 206874446 T A INO80D Nonsense_Mutation p.K539* 0.09 TCGA-D8-A1XK-01 2 209201654 209201654 T C PIKFYVE Splice_Site p.X1537_splice 0.35 TCGA-D8-A1XK-01 2 212285236 212285236 T C ERBB4 Missense_Mutation p.Y1022C 0.17 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 2 21236260 21236260 G T APOB Missense_Mutation p.L1330M 0.19 possibly_damaging(0.796) TCGA-D8-A1XK-01 2 216964712 216964712 A G TMEM169 Missense_Mutation p.K114R 0.15 tolerated(0.09) benign(0.082) TCGA-D8-A1XK-01 2 218669122 218669122 A G TNS1 3'UTR 0.34 TCGA-D8-A1XK-01 2 219362503 219362503 T - USP37 Frame_Shift_Del p.N412Mfs*22 0.08 TCGA-D8-A1XK-01 2 219487380 219487380 C A PLCD4 Missense_Mutation p.T184K 0.23 tolerated(1) benign(0.003) TCGA-D8-A1XK-01 2 219549920 219549920 T A STK36 Missense_Mutation p.I450N 0.34 deleterious(0) possibly_damaging(0.836) TCGA-D8-A1XK-01 2 219612918 219612918 T C TTLL4 Silent p.N823N 0.33 TCGA-D8-A1XK-01 2 220098589 220098589 C T ANKZF1 Silent p.I324I 0.22 TCGA-D8-A1XK-01 2 223389675 223389675 T C SGPP2 Silent p.L191L 0.16 TCGA-D8-A1XK-01 2 223504404 223504404 A T FARSB Missense_Mutation p.I117K 0.10 deleterious(0) possibly_damaging(0.891) TCGA-D8-A1XK-01 2 228159736 228159736 C T COL4A3 Missense_Mutation p.R1159C 0.08 unknown(0) TCGA-D8-A1XK-01 2 231943447 231943447 T C PSMD1 Silent p.S382S 0.29 TCGA-D8-A1XK-01 2 233697794 233697794 G A GIGYF2 Silent p.A940A 0.23 TCGA-D8-A1XK-01 2 233750060 233750060 T G NGEF Missense_Mutation p.E456A 0.13 tolerated(0.22) probably_damaging(0.97) TCGA-D8-A1XK-01 2 233791755 233791755 T C NGEF Missense_Mutation p.I175M 0.11 deleterious(0.02) possibly_damaging(0.87) TCGA-D8-A1XK-01 2 234394463 234394463 T G USP40 Missense_Mutation p.I1131L 0.18 tolerated(0.49) benign(0.019) TCGA-D8-A1XK-01 2 234420562 234420562 T C USP40 Intron 0.17 TCGA-D8-A1XK-01 2 234681161 234681161 A - UGT1A4 Frame_Shift_Del p.R524Efs*22 0.10 TCGA-D8-A1XK-01 2 236653360 236653360 G A AGAP1 Missense_Mutation p.A139T 0.23 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 2 239165684 239165684 A G PER2 Silent p.G648G 0.34 TCGA-D8-A1XK-01 2 239353276 239353276 T C ASB1 Missense_Mutation p.L263P 0.30 tolerated(0.13) benign(0.083) TCGA-D8-A1XK-01 2 242352812 242352812 T A FARP2 Missense_Mutation p.I200K 0.30 deleterious(0) probably_damaging(0.976) TCGA-D8-A1XK-01 2 24535098 24535098 A G ITSN2 Missense_Mutation p.L112S 0.42 tolerated(0.66) probably_damaging(0.999) TCGA-D8-A1XK-01 2 24980898 24980898 A G NCOA1 Missense_Mutation p.N1313S 0.49 tolerated(0.2) benign(0.119) TCGA-D8-A1XK-01 2 26676213 26676213 T C DRC1 Missense_Mutation p.M572T 0.34 tolerated(0.74) benign(0) TCGA-D8-A1XK-01 2 26696942 26696942 T C OTOF Missense_Mutation p.N1109D 0.58 tolerated(1) benign(0) TCGA-D8-A1XK-01 2 27549474 27549474 A T GTF3C2 3'UTR 0.34 TCGA-D8-A1XK-01 2 30863518 30863518 C T LCLAT1 3'UTR 0.42 TCGA-D8-A1XK-01 2 31565141 31565141 A C XDH Missense_Mutation p.F1143V 0.45 deleterious(0.03) benign(0.2) TCGA-D8-A1XK-01 2 32613875 32613875 A C BIRC6 Missense_Mutation p.I235L 0.10 benign(0.01) TCGA-D8-A1XK-01 2 33813419 33813419 T C FAM98A Missense_Mutation p.S169G 0.37 deleterious(0) possibly_damaging(0.888) TCGA-D8-A1XK-01 2 3391955 3391955 C T TRAPPC12 Silent p.G187G 0.31 TCGA-D8-A1XK-01 2 37129876 37129876 A G STRN Silent p.G170G 0.14 TCGA-D8-A1XK-01 2 37286079 37286079 A T HEATR5B Missense_Mutation p.I634N 0.38 deleterious(0.02) benign(0.054) TCGA-D8-A1XK-01 2 43655254 43655254 A T THADA Missense_Mutation p.V1348D 0.19 deleterious(0) possibly_damaging(0.713) TCGA-D8-A1XK-01 2 48046193 48046193 C A FBXO11 Nonsense_Mutation p.E608* 0.12 TCGA-D8-A1XK-01 2 50733715 50733715 A G NRXN1 Silent p.N845N 0.22 TCGA-D8-A1XK-01 2 54852083 54852083 A C SPTBN1 Missense_Mutation p.Q442P 0.36 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XK-01 2 61456055 61456055 T C USP34 Silent p.L2425L 0.39 TCGA-D8-A1XK-01 2 61575404 61575404 T C USP34 Missense_Mutation p.H629R 0.19 tolerated_low_confidence(0.39) benign(0) TCGA-D8-A1XK-01 2 61709572 61709572 A G XPO1 Missense_Mutation p.I972T 0.32 tolerated(0.54) benign(0.001) TCGA-D8-A1XK-01 2 69757821 69757821 T C AAK1 Missense_Mutation p.Y225C 0.38 deleterious(0) unknown(0) TCGA-D8-A1XK-01 2 71883420 71883420 G A DYSF Silent p.K1585K 0.25 TCGA-D8-A1XK-01 2 72362450 72362450 G - CYP26B1 Frame_Shift_Del p.E177Rfs*12 0.27 TCGA-D8-A1XK-01 2 80136785 80136785 G A CTNNA2 Silent p.R306R 0.46 TCGA-D8-A1XK-01 2 84848399 84848399 C T DNAH6 Missense_Mutation p.R1293C 0.33 deleterious(0) possibly_damaging(0.893) TCGA-D8-A1XK-01 2 85361522 85361522 G A TCF7L1 Silent p.L130L 0.10 TCGA-D8-A1XK-01 2 85570760 85570760 A G RETSAT Splice_Site p.X565_splice 0.19 TCGA-D8-A1XK-01 2 85894924 85894924 A G SFTPB Missense_Mutation p.W37R 0.38 tolerated(0.83) benign(0.001) TCGA-D8-A1XK-01 2 86712078 86712078 T C KDM3A Silent p.N1036N 0.27 TCGA-D8-A1XK-01 2 88409969 88409969 A G SMYD1 Missense_Mutation p.M471V 0.10 tolerated_low_confidence(0.11) benign(0.002) TCGA-D8-A1XK-01 2 88472800 88472800 G A THNSL2 Missense_Mutation p.C44Y 0.13 tolerated(0.07) benign(0.005) TCGA-D8-A1XK-01 2 96601221 96601221 A T ANKRD36C 3'UTR 0.07 TCGA-D8-A1XK-01 2 96852623 96852623 T C STARD7 Missense_Mutation p.M320V 0.36 tolerated(0.28) benign(0.007) TCGA-D8-A1XK-01 2 96950287 96950287 G C SNRNP200 Missense_Mutation p.L1401V 0.14 tolerated(0.2) possibly_damaging(0.513) TCGA-D8-A1XK-01 2 97884966 97884966 T C ANKRD36 Missense_Mutation p.V1313A 0.07 tolerated(0.18) possibly_damaging(0.674) TCGA-D8-A1XK-01 2 98419155 98419155 C T TMEM131 Missense_Mutation p.R834Q 0.07 tolerated(0.74) benign(0.019) TCGA-D8-A1XK-01 2 99227309 99227309 G T UNC50 Missense_Mutation p.V118L 0.21 tolerated(0.08) benign(0.373) TCGA-D8-A1XK-01 2 99439347 99439347 T C KIAA1211L Silent p.E463E 0.25 TCGA-D8-A1XK-01 2 99995779 99995779 A G EIF5B Splice_Site p.X651_splice 0.13 TCGA-D8-A1XK-01 3 10011467 10011467 A G EMC3 Missense_Mutation p.M198T 0.09 tolerated(0.35) benign(0.002) TCGA-D8-A1XK-01 3 101062691 101062691 A G SENP7 Silent p.L649L 0.26 TCGA-D8-A1XK-01 3 101083810 101083810 T C SENP7 Silent p.G448G 0.25 TCGA-D8-A1XK-01 3 10114941 10114941 G T FANCD2 Missense_Mutation p.R870S 0.35 tolerated(0.13) benign(0.149) TCGA-D8-A1XK-01 3 101574269 101574269 C G NFKBIZ Missense_Mutation p.Q541E 0.07 tolerated(0.06) benign(0.345) TCGA-D8-A1XK-01 3 102187981 102187981 T C ZPLD1 Splice_Site p.X327_splice 0.26 TCGA-D8-A1XK-01 3 108367765 108367765 G C DZIP3 Missense_Mutation p.V655L 0.25 tolerated_low_confidence(0.14) benign(0.123) TCGA-D8-A1XK-01 3 111432906 111432906 T C PLCXD2 Missense_Mutation p.I266T 0.20 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 3 111685516 111685516 C T PHLDB2 Missense_Mutation p.A1045V 0.34 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 3 113723546 113723546 T G KIAA1407 Missense_Mutation p.N639T 0.07 tolerated(0.37) benign(0.407) TCGA-D8-A1XK-01 3 113755558 113755558 T - KIAA1407 Frame_Shift_Del p.N164Mfs*3 0.24 TCGA-D8-A1XK-01 3 121248613 121248613 T A POLQ Missense_Mutation p.L329F 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 3 121414699 121414699 A G GOLGB1 Silent p.I1557I 0.27 TCGA-D8-A1XK-01 3 124567178 124567178 A G ITGB5 Missense_Mutation p.Y197H 0.30 tolerated(0.27) probably_damaging(1) TCGA-D8-A1XK-01 3 125301808 125301808 T C OSBPL11 Missense_Mutation p.N60S 0.20 tolerated(0.07) benign(0.002) TCGA-D8-A1XK-01 3 127299097 127299097 G C TPRA1 Intron 0.36 TCGA-D8-A1XK-01 3 12881679 12881679 A G RPL32 Missense_Mutation p.F20L 0.16 deleterious(0.02) benign(0.287) TCGA-D8-A1XK-01 3 129389590 129389590 A G TMCC1 Missense_Mutation p.V365A 0.06 deleterious(0) possibly_damaging(0.604) TCGA-D8-A1XK-01 3 130449170 130449170 T G PIK3R4 Missense_Mutation p.N523H 0.20 tolerated(0.26) benign(0.001) TCGA-D8-A1XK-01 3 13679066 13679066 T A FBLN2 Missense_Mutation p.C1115S 0.27 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 3 138329772 138329772 A G FAIM 5'UTR 0.21 TCGA-D8-A1XK-01 3 142511768 142511768 T - TRPC1 Frame_Shift_Del p.F515Lfs*41 0.26 TCGA-D8-A1XK-01 3 14862849 14862849 A G FGD5 Silent p.P757P 0.64 TCGA-D8-A1XK-01 3 150917043 150917043 G A GPR171 Missense_Mutation p.T44M 0.30 deleterious(0.01) benign(0.399) TCGA-D8-A1XK-01 3 15137516 15137516 A C ZFYVE20 Missense_Mutation p.S38A 0.27 tolerated(0.07) benign(0.003) TCGA-D8-A1XK-01 3 15272020 15272020 A T CAPN7 Missense_Mutation p.H337L 0.07 deleterious(0) possibly_damaging(0.665) TCGA-D8-A1XK-01 3 15471489 15471489 T C EAF1 Missense_Mutation p.V58A 0.26 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 3 15711898 15711898 G A ANKRD28 Missense_Mutation p.A1014V 0.07 deleterious(0.02) benign(0.001) TCGA-D8-A1XK-01 3 165491085 165491085 T - BCHE 3'UTR 0.09 TCGA-D8-A1XK-01 3 169500427 169500427 T A MYNN Missense_Mutation p.H465Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 3 169557805 169557805 T - LRRC31 Frame_Shift_Del p.R542Efs*37 0.08 TCGA-D8-A1XK-01 3 170020869 170020869 T G PRKCI Missense_Mutation p.F582C 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 3 170895125 170895125 T - TNIK Frame_Shift_Del p.G229Vfs*11 0.27 TCGA-D8-A1XK-01 3 17131386 17131386 C G PLCL2 Missense_Mutation p.N996K 0.29 tolerated_low_confidence(0.91) benign(0.051) TCGA-D8-A1XK-01 3 172351098 172351098 T C NCEH1 3'UTR 0.18 TCGA-D8-A1XK-01 3 172737320 172737320 T C SPATA16 Silent p.Q268Q 0.19 TCGA-D8-A1XK-01 3 174951810 174951810 T C NAALADL2 Missense_Mutation p.V212A 0.15 tolerated(0.43) benign(0.064) TCGA-D8-A1XK-01 3 179341878 179341878 T A NDUFB5 3'UTR 0.11 TCGA-D8-A1XK-01 3 179408081 179408081 T - USP13 Frame_Shift_Del p.L118* 0.20 TCGA-D8-A1XK-01 3 179424844 179424844 T C USP13 Silent p.N200N 0.21 TCGA-D8-A1XK-01 3 183683014 183683014 T C ABCC5 Missense_Mutation p.R664G 0.26 tolerated(0.08) benign(0.035) TCGA-D8-A1XK-01 3 184059929 184059929 A G FAM131A Missense_Mutation p.E134G 0.26 deleterious(0) probably_damaging(0.969) TCGA-D8-A1XK-01 3 18438674 18438674 T C SATB1 Missense_Mutation p.M250V 0.25 tolerated(0.2) benign(0.013) TCGA-D8-A1XK-01 3 184557394 184557394 C G VPS8 Intron 0.11 TCGA-D8-A1XK-01 3 18458516 18458516 T C SATB1 Missense_Mutation p.Y89C 0.32 tolerated(0.16) possibly_damaging(0.62) TCGA-D8-A1XK-01 3 185214687 185214687 A G TMEM41A Missense_Mutation p.Y68H 0.10 tolerated(0.06) benign(0.033) TCGA-D8-A1XK-01 3 186338515 186338515 A G AHSG Silent p.L300L 0.25 TCGA-D8-A1XK-01 3 186395438 186395438 T C HRG Silent p.R448R 0.24 TCGA-D8-A1XK-01 3 188478051 188478051 A G LPP Missense_Mutation p.Y464C 0.30 deleterious(0) probably_damaging(0.987) TCGA-D8-A1XK-01 3 190326897 190326897 T A IL1RAP Missense_Mutation p.I155N 0.27 tolerated(0.32) benign(0.002) TCGA-D8-A1XK-01 3 195243516 195243516 A G PPP1R2 3'UTR 0.38 TCGA-D8-A1XK-01 3 196749976 196749976 C G MFI2 Missense_Mutation p.D166H 0.63 deleterious(0.04) benign(0.142) TCGA-D8-A1XK-01 3 27446348 27446348 A C SLC4A7 Missense_Mutation p.F674C 0.35 deleterious(0) probably_damaging(0.964) TCGA-D8-A1XK-01 3 3189148 3189148 G A TRNT1 Missense_Mutation p.A273T 0.28 tolerated(0.16) benign(0) TCGA-D8-A1XK-01 3 37045916 37045916 G C MLH1 Missense_Mutation p.A111P 0.43 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 3 37366139 37366139 A G GOLGA4 Missense_Mutation p.K943R 0.17 benign(0.085) TCGA-D8-A1XK-01 3 38766669 38766669 G C SCN10A Missense_Mutation p.A1075G 0.37 tolerated(0.39) benign(0.008) TCGA-D8-A1XK-01 3 38802201 38802201 G - SCN10A Frame_Shift_Del p.L308Yfs*46 0.27 TCGA-D8-A1XK-01 3 39140303 39140303 A G GORASP1 Missense_Mutation p.L333P 0.29 tolerated(0.14) benign(0.01) TCGA-D8-A1XK-01 3 44612841 44612841 T C ZKSCAN7 Missense_Mutation p.S747P 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-D8-A1XK-01 3 47129671 47129671 T C SETD2 Missense_Mutation p.S1737G 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-D8-A1XK-01 3 48929454 48929454 A G SLC25A20 Missense_Mutation p.S53P 0.39 tolerated(0.07) benign(0.006) TCGA-D8-A1XK-01 3 49168278 49168278 T C LAMB2 Missense_Mutation p.I311V 0.23 tolerated(1) benign(0.001) TCGA-D8-A1XK-01 3 49756369 49756369 A G AMIGO3 Missense_Mutation p.L177P 0.31 deleterious(0) probably_damaging(0.987) TCGA-D8-A1XK-01 3 50323961 50323961 G A LSMEM2 Missense_Mutation p.V40M 0.70 tolerated(0.3) benign(0.107) TCGA-D8-A1XK-01 3 51457448 51457448 T - VPRBP Frame_Shift_Del p.K563Nfs*16 0.11 TCGA-D8-A1XK-01 3 52088095 52088095 G C DUSP7 Missense_Mutation p.I271M 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 3 52544367 52544367 T C STAB1 Silent p.A877A 0.36 TCGA-D8-A1XK-01 3 52729457 52729457 T - GLT8D1 Frame_Shift_Del p.K264Nfs*3 0.31 TCGA-D8-A1XK-01 3 53765136 53765136 A G CACNA1D Missense_Mutation p.K810R 0.35 tolerated(0.13) benign(0.259) TCGA-D8-A1XK-01 3 53835273 53835273 T C CACNA1D Silent p.H1763H 0.28 TCGA-D8-A1XK-01 3 56605270 56605271 - A CCDC66 Frame_Shift_Ins p.S295Ifs*2 0.32 TCGA-D8-A1XK-01 3 56703802 56703802 A G FAM208A Missense_Mutation p.Y221H 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-D8-A1XK-01 3 57439118 57439118 A G DNAH12 Missense_Mutation p.Y1134H 0.46 deleterious(0) benign(0.403) TCGA-D8-A1XK-01 3 57496562 57496562 T A DNAH12 Missense_Mutation p.N142Y 0.16 deleterious(0.03) benign(0.098) TCGA-D8-A1XK-01 3 57619029 57619029 T G DENND6A Missense_Mutation p.Y439S 0.16 deleterious(0) possibly_damaging(0.526) TCGA-D8-A1XK-01 3 65342309 65342309 A T MAGI1 Missense_Mutation p.L1378Q 0.35 tolerated_low_confidence(0.33) unknown(0) TCGA-D8-A1XK-01 3 8667992 8667992 T A SSUH2 Silent p.S230S 0.08 TCGA-D8-A1XK-01 3 8981289 8981289 T G RAD18 Missense_Mutation p.K218T 0.07 deleterious(0.01) benign(0.043) TCGA-D8-A1XK-01 3 9412821 9412821 T C THUMPD3 Silent p.N136N 0.27 TCGA-D8-A1XK-01 3 9730753 9730753 A G MTMR14 Missense_Mutation p.T474A 0.19 tolerated(0.64) benign(0.002) TCGA-D8-A1XK-01 3 97673260 97673260 A G MINA Missense_Mutation p.V254A 0.27 deleterious(0) possibly_damaging(0.626) TCGA-D8-A1XK-01 3 98109906 98109906 C G OR5K3 Missense_Mutation p.H133D 0.28 tolerated(0.2) benign(0.25) TCGA-D8-A1XK-01 3 98251821 98251821 A G GPR15 Missense_Mutation p.H315R 0.35 tolerated(1) benign(0) TCGA-D8-A1XK-01 4 106196748 106196748 T C TET2 Missense_Mutation p.L1694S 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-D8-A1XK-01 4 111542358 111542358 T C PITX2 Missense_Mutation p.I125V 0.23 deleterious(0) possibly_damaging(0.826) TCGA-D8-A1XK-01 4 114117624 114117624 T C ANK2 Splice_Site p.X95_splice 0.40 TCGA-D8-A1XK-01 4 120983199 120983199 A T MAD2L1 Missense_Mutation p.I91N 0.21 tolerated(0.13) benign(0.033) TCGA-D8-A1XK-01 4 122593748 122593749 - C ANXA5 Frame_Shift_Ins p.T189Dfs*3 0.12 TCGA-D8-A1XK-01 4 126328238 126328238 T C FAT4 Silent p.H1837H 0.38 TCGA-D8-A1XK-01 4 140265461 140265461 T A NAA15 Missense_Mutation p.I220N 0.36 deleterious(0) probably_damaging(0.932) TCGA-D8-A1XK-01 4 146048804 146048804 A G ABCE1 3'UTR 0.33 TCGA-D8-A1XK-01 4 152080503 152080503 A G SH3D19 Silent p.C268C 0.36 TCGA-D8-A1XK-01 4 153271249 153271249 C T FBXW7 Missense_Mutation p.E177K 0.37 deleterious_low_confidence(0.01) benign(0.236) TCGA-D8-A1XK-01 4 153802234 153802234 A G ARFIP1 Silent p.K177K 0.12 TCGA-D8-A1XK-01 4 154506765 154506765 T C KIAA0922 Splice_Site p.X437_splice 0.23 TCGA-D8-A1XK-01 4 155533355 155533355 T C FGG Splice_Site p.X42_splice 0.35 TCGA-D8-A1XK-01 4 169393852 169393852 G A DDX60L 5'UTR 0.37 TCGA-D8-A1XK-01 4 170634376 170634376 A G CLCN3 Missense_Mutation p.T766A 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-D8-A1XK-01 4 170674878 170674878 A T C4orf27 Missense_Mutation p.F53I 0.34 deleterious(0.01) possibly_damaging(0.888) TCGA-D8-A1XK-01 4 171008311 171008311 T C AADAT Missense_Mutation p.M109V 0.08 tolerated(0.06) possibly_damaging(0.476) TCGA-D8-A1XK-01 4 175229894 175229894 G C CEP44 Missense_Mutation p.E188Q 0.38 tolerated(0.14) benign(0.184) TCGA-D8-A1XK-01 4 187197005 187197005 G A F11 Missense_Mutation p.V184M 0.38 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 4 187521121 187521121 T C FAT1 Missense_Mutation p.T4012A 0.43 benign(0.001) TCGA-D8-A1XK-01 4 2733551 2733551 T C FAM193A Missense_Mutation p.W1252R 0.28 deleterious(0) possibly_damaging(0.667) TCGA-D8-A1XK-01 4 38776708 38776708 A G TLR10 Silent p.N168N 0.09 TCGA-D8-A1XK-01 4 40121611 40121611 T C N4BP2 Missense_Mutation p.L627S 0.20 tolerated(0.16) benign(0.005) TCGA-D8-A1XK-01 4 41608009 41608009 T C LIMCH1 Silent p.A158A 0.41 TCGA-D8-A1XK-01 4 42895324 42895324 G A GRXCR1 Missense_Mutation p.R14Q 0.36 tolerated_low_confidence(0.37) benign(0.311) TCGA-D8-A1XK-01 4 4436529 4436529 C T STX18 Missense_Mutation p.E224K 0.45 deleterious(0) benign(0.017) TCGA-D8-A1XK-01 4 48604083 48604083 A - FRYL Frame_Shift_Del p.L330* 0.34 TCGA-D8-A1XK-01 4 515577 515577 C T PIGG Silent p.H487H 0.16 TCGA-D8-A1XK-01 4 54364970 54364970 A T LNX1 Silent p.I272I 0.39 TCGA-D8-A1XK-01 4 5827261 5827261 T - CRMP1 Frame_Shift_Del p.I645Sfs*16 0.35 TCGA-D8-A1XK-01 4 6302783 6302783 A G WFS1 Missense_Mutation p.I421V 0.33 tolerated(1) benign(0.002) TCGA-D8-A1XK-01 4 6594959 6594959 A G MAN2B2 Missense_Mutation p.Y247C 0.35 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XK-01 4 69811106 69811106 T C UGT2A3 Missense_Mutation p.D261G 0.06 deleterious(0) probably_damaging(0.973) TCGA-D8-A1XK-01 4 72629626 72629626 G A GC Silent p.Y186Y 0.51 TCGA-D8-A1XK-01 4 74285358 74285358 T C ALB Splice_Site p.X595_splice 0.27 TCGA-D8-A1XK-01 4 74736236 74736236 A G CXCL1 Splice_Site p.X103_splice 0.26 TCGA-D8-A1XK-01 4 77304813 77304813 A G CCDC158 Splice_Site p.X268_splice 0.38 TCGA-D8-A1XK-01 4 77305430 77305430 C T CCDC158 Missense_Mutation p.M179I 0.45 tolerated(0.24) possibly_damaging(0.758) TCGA-D8-A1XK-01 4 90816143 90816143 T G MMRN1 Missense_Mutation p.F7L 0.34 tolerated_low_confidence(0.41) benign(0.022) TCGA-D8-A1XK-01 4 95220620 95220620 A G HPGDS 3'UTR 0.37 TCGA-D8-A1XK-01 5 10239373 10239373 A G FAM173B Missense_Mutation p.F38L 0.07 tolerated(1) benign(0.002) TCGA-D8-A1XK-01 5 102442598 102442598 T C GIN1 Missense_Mutation p.Y52C 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-D8-A1XK-01 5 112179043 112179043 A - APC Frame_Shift_Del p.S2586Vfs*7 0.27 TCGA-D8-A1XK-01 5 115361979 115361979 T C AQPEP 3'UTR 0.27 TCGA-D8-A1XK-01 5 115815855 115815855 T C SEMA6A Missense_Mutation p.I405V 0.09 tolerated(0.87) benign(0.002) TCGA-D8-A1XK-01 5 122893186 122893186 T C CSNK1G3 Intron 0.10 TCGA-D8-A1XK-01 5 131323822 131323822 G T ACSL6 Silent p.I250I 0.31 TCGA-D8-A1XK-01 5 132198070 132198070 T A GDF9 Missense_Mutation p.R192S 0.45 tolerated(0.8) benign(0.003) TCGA-D8-A1XK-01 5 132199940 132199940 A G GDF9 Missense_Mutation p.Y96H 0.44 tolerated(0.27) possibly_damaging(0.765) TCGA-D8-A1XK-01 5 133326764 133326764 A G VDAC1 Missense_Mutation p.Y67H 0.10 tolerated(0.22) benign(0.028) TCGA-D8-A1XK-01 5 134347285 134347285 A G CATSPER3 Missense_Mutation p.Q390R 0.45 tolerated(0.07) benign(0.077) TCGA-D8-A1XK-01 5 135382083 135382083 C A TGFBI Missense_Mutation p.L120M 0.37 tolerated(0.12) probably_damaging(0.998) TCGA-D8-A1XK-01 5 137219153 137219153 A G MYOT Missense_Mutation p.I299M 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-D8-A1XK-01 5 137226248 137226248 T - PKD2L2 Frame_Shift_Del p.L39* 0.09 TCGA-D8-A1XK-01 5 137347505 137347505 A G FAM13B Missense_Mutation p.I167T 0.39 tolerated(0.3) benign(0.039) TCGA-D8-A1XK-01 5 137537800 137537800 A T CDC23 Splice_Site p.X139_splice 0.27 TCGA-D8-A1XK-01 5 137803283 137803283 A G EGR1 Missense_Mutation p.H382R 0.29 deleterious(0) unknown(0) TCGA-D8-A1XK-01 5 13871671 13871671 A G DNAH5 Splice_Site p.X1200_splice 0.24 TCGA-D8-A1XK-01 5 139938257 139938257 G A APBB3 Silent p.G465G 0.37 TCGA-D8-A1XK-01 5 140214295 140214295 C G PCDHA7 Missense_Mutation p.I109M 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-D8-A1XK-01 5 140215804 140215804 A G PCDHA7 Silent p.Q612Q 0.14 TCGA-D8-A1XK-01 5 140236696 140236696 T C PCDHA10 Missense_Mutation p.S355P 0.21 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-D8-A1XK-01 5 140531205 140531205 T C PCDHB6 Missense_Mutation p.L456P 0.16 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-D8-A1XK-01 5 140723785 140723785 G A PCDHGA3 Missense_Mutation p.R62H 0.08 tolerated_low_confidence(0.16) benign(0.162) TCGA-D8-A1XK-01 5 140751487 140751487 C T PCDHGB3 Missense_Mutation p.A509V 0.12 deleterious(0.03) benign(0.328) TCGA-D8-A1XK-01 5 140763960 140763960 G T PCDHGA7 Silent p.G498G 0.22 TCGA-D8-A1XK-01 5 140869786 140869786 C G PCDHGC5 Missense_Mutation p.Q327E 0.10 tolerated(0.27) benign(0.297) TCGA-D8-A1XK-01 5 141248817 141248817 T C PCDH1 Missense_Mutation p.I74V 0.08 deleterious(0.05) probably_damaging(0.99) TCGA-D8-A1XK-01 5 141309266 141309266 T A KIAA0141 Missense_Mutation p.S178T 0.11 deleterious(0.03) possibly_damaging(0.708) TCGA-D8-A1XK-01 5 142281563 142281563 T A ARHGAP26 Missense_Mutation p.F221I 0.10 deleterious(0) possibly_damaging(0.637) TCGA-D8-A1XK-01 5 142779500 142779500 C A NR3C1 Missense_Mutation p.C302F 0.08 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XK-01 5 145665548 145665548 C T RBM27 Silent p.D1046D 0.09 TCGA-D8-A1XK-01 5 145838842 145838842 C A TCERG1 Silent p.T278T 0.21 TCGA-D8-A1XK-01 5 1463783 1463783 G A LPCAT1 Missense_Mutation p.R530C 0.11 tolerated_low_confidence(0.26) benign(0.001) TCGA-D8-A1XK-01 5 147261734 147261734 A G SCGB3A2 3'UTR 0.46 TCGA-D8-A1XK-01 5 150075198 150075198 T C RBM22 Missense_Mutation p.N206D 0.39 deleterious(0.04) benign(0.028) TCGA-D8-A1XK-01 5 150901548 150901548 T G FAT2 Missense_Mutation p.I3536L 0.65 benign(0.141) TCGA-D8-A1XK-01 5 150946044 150946044 C T FAT2 Missense_Mutation p.A817T 0.07 benign(0.02) TCGA-D8-A1XK-01 5 153765901 153765901 G A GALNT10 Missense_Mutation p.A323T 0.27 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 5 154244839 154244839 G A CNOT8 Missense_Mutation p.V69I 0.43 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XK-01 5 162917426 162917426 A - HMMR Frame_Shift_Del p.K667Nfs*11 0.32 TCGA-D8-A1XK-01 5 162944491 162944491 T C MAT2B Intron 0.33 TCGA-D8-A1XK-01 5 171809077 171809077 A G SH3PXD2B Missense_Mutation p.F122L 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-D8-A1XK-01 5 174869489 174869489 A G DRD1 Missense_Mutation p.I205T 0.13 deleterious(0) probably_damaging(0.988) TCGA-D8-A1XK-01 5 175782704 175782704 A G KIAA1191 Missense_Mutation p.I26T 0.37 deleterious(0.01) benign(0.001) TCGA-D8-A1XK-01 5 176084516 176084516 C A TSPAN17 Intron 0.15 TCGA-D8-A1XK-01 5 176402395 176402395 A G UIMC1 Splice_Site p.X78_splice 0.07 TCGA-D8-A1XK-01 5 176719060 176719060 T G NSD1 Missense_Mutation p.F2122V 0.29 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XK-01 5 176719136 176719136 T G NSD1 Missense_Mutation p.L2147R 0.28 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 5 176939145 176939145 C T DDX41 Missense_Mutation p.V562M 0.37 deleterious(0.03) benign(0.01) TCGA-D8-A1XK-01 5 176959539 176959539 T G FAM193B Missense_Mutation p.S394R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1XK-01 5 177574760 177574760 T C RMND5B Missense_Mutation p.Y332H 0.14 deleterious(0) possibly_damaging(0.893) TCGA-D8-A1XK-01 5 179729575 179729576 - G GFPT2 Frame_Shift_Ins p.I618Hfs*10 0.12 TCGA-D8-A1XK-01 5 32444344 32444344 G T ZFR Missense_Mutation p.A43D 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-D8-A1XK-01 5 33984609 33984609 G A SLC45A2 Missense_Mutation p.P27L 0.14 tolerated(0.07) benign(0.052) TCGA-D8-A1XK-01 5 34826493 34826493 A G RAI14 Missense_Mutation p.Q906R 0.19 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 5 37195962 37195962 A C C5orf42 Missense_Mutation p.I1270R 0.25 deleterious(0) possibly_damaging(0.865) TCGA-D8-A1XK-01 5 37309247 37309247 A T NUP155 Nonsense_Mutation p.C917* 0.09 TCGA-D8-A1XK-01 5 40947909 40947909 T C C7 Missense_Mutation p.V315A 0.21 tolerated(0.31) benign(0.057) TCGA-D8-A1XK-01 5 42799978 42799978 G A CCDC152 3'UTR 0.21 TCGA-D8-A1XK-01 5 54948414 54948414 G A SLC38A9 Missense_Mutation p.L299F 0.38 tolerated(0.07) probably_damaging(0.938) TCGA-D8-A1XK-01 5 619114 619114 A G CEP72 Missense_Mutation p.Q31R 0.06 tolerated(1) benign(0.001) TCGA-D8-A1XK-01 5 63894218 63894218 T A RGS7BP Nonsense_Mutation p.L213* 0.42 TCGA-D8-A1XK-01 5 67592114 67592114 G T PIK3R1 Missense_Mutation p.G644C 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 5 67593261 67593261 T A PIK3R1 Missense_Mutation p.H669Q 0.32 deleterious(0) probably_damaging(0.99) TCGA-D8-A1XK-01 5 7414819 7414819 T C ADCY2 Missense_Mutation p.I115T 0.27 tolerated(0.11) benign(0.004) TCGA-D8-A1XK-01 5 77461431 77461431 A G AP3B1 Intron 0.36 TCGA-D8-A1XK-01 6 101090613 101090613 C G ASCC3 Missense_Mutation p.E1249Q 0.12 tolerated(0.13) possibly_damaging(0.531) TCGA-D8-A1XK-01 6 109477209 109477209 G A CEP57L1 Intron 0.50 TCGA-D8-A1XK-01 6 10956408 10956408 A C SYCP2L Missense_Mutation p.N699T 0.11 tolerated(0.05) possibly_damaging(0.884) TCGA-D8-A1XK-01 6 109827679 109827679 C T AK9 Missense_Mutation p.G1567D 0.43 tolerated(1) benign(0.003) TCGA-D8-A1XK-01 6 110113866 110113866 A G FIG4 Missense_Mutation p.R820G 0.38 deleterious(0) probably_damaging(0.94) TCGA-D8-A1XK-01 6 111213605 111213605 T C AMD1 Missense_Mutation p.F192L 0.28 deleterious(0.04) benign(0.147) TCGA-D8-A1XK-01 6 112397206 112397206 T - TUBE1 Frame_Shift_Del p.K249Sfs*10 0.32 TCGA-D8-A1XK-01 6 117013467 117013467 T C KPNA5 Silent p.V84V 0.13 TCGA-D8-A1XK-01 6 117687257 117687257 A T ROS1 Missense_Mutation p.S932T 0.40 tolerated(0.07) possibly_damaging(0.571) TCGA-D8-A1XK-01 6 119282932 119282932 A T FAM184A Missense_Mutation p.F1112Y 0.53 deleterious(0.03) possibly_damaging(0.478) TCGA-D8-A1XK-01 6 123118049 123118049 T C SMPDL3A Missense_Mutation p.I136T 0.07 deleterious(0.02) possibly_damaging(0.861) TCGA-D8-A1XK-01 6 128134626 128134626 T C THEMIS Missense_Mutation p.D387G 0.31 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 6 129637010 129637010 C A LAMA2 Missense_Mutation p.T1280K 0.59 tolerated(0.63) possibly_damaging(0.854) TCGA-D8-A1XK-01 6 129687492 129687492 A G LAMA2 Missense_Mutation p.T1616A 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1XK-01 6 130536412 130536412 T C SAMD3 Missense_Mutation p.T3A 0.32 tolerated_low_confidence(0.09) benign(0.02) TCGA-D8-A1XK-01 6 131201317 131201317 A G EPB41L2 Silent p.N621N 0.15 TCGA-D8-A1XK-01 6 132196979 132196979 A G ENPP1 Missense_Mutation p.I567V 0.39 deleterious(0.04) possibly_damaging(0.835) TCGA-D8-A1XK-01 6 132966199 132966199 A G TAAR1 Missense_Mutation p.L315P 0.11 deleterious(0) possibly_damaging(0.88) TCGA-D8-A1XK-01 6 143081364 143081364 A G HIVEP2 Missense_Mutation p.C2021R 0.33 tolerated(0.27) benign(0.094) TCGA-D8-A1XK-01 6 144750006 144750006 T G UTRN Missense_Mutation p.I224S 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 6 149918302 149918302 G A KATNA1 Nonsense_Mutation p.R392* 0.54 TCGA-D8-A1XK-01 6 150285229 150285229 T A ULBP1 Missense_Mutation p.L15H 0.45 deleterious(0.01) unknown(0) TCGA-D8-A1XK-01 6 151773568 151773568 T - C6orf211 5'UTR 0.41 TCGA-D8-A1XK-01 6 152737585 152737585 T C SYNE1 Missense_Mutation p.D1996G 0.46 probably_damaging(0.995) TCGA-D8-A1XK-01 6 157502124 157502124 A G ARID1B Missense_Mutation p.T1053A 0.22 probably_damaging(0.95) TCGA-D8-A1XK-01 6 158497723 158497723 A T SYNJ2 Silent p.S786S 0.08 TCGA-D8-A1XK-01 6 158535819 158535819 A G SERAC1 Splice_Site p.X562_splice 0.06 TCGA-D8-A1XK-01 6 158915801 158915801 A G TULP4 Missense_Mutation p.Q598R 0.31 deleterious(0) benign(0.001) TCGA-D8-A1XK-01 6 165715153 165715153 G A C6orf118 Missense_Mutation p.R220C 0.09 tolerated(0.15) benign(0.006) TCGA-D8-A1XK-01 6 168352743 168352743 A G MLLT4 Missense_Mutation p.E1563G 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D8-A1XK-01 6 168369817 168369817 A T MLLT4 3'Flank 0.17 TCGA-D8-A1XK-01 6 17794817 17794817 A G KIF13A Missense_Mutation p.F1021L 0.11 deleterious(0) benign(0.047) TCGA-D8-A1XK-01 6 24588848 24588848 T C KIAA0319 Missense_Mutation p.I323V 0.06 tolerated(1) benign(0.001) TCGA-D8-A1XK-01 6 24687700 24687700 A T ACOT13 Intron 0.50 TCGA-D8-A1XK-01 6 25510790 25510790 A G LRRC16A Missense_Mutation p.I511M 0.17 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XK-01 6 27879599 27879599 G C OR2B2 Missense_Mutation p.P167A 0.37 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XK-01 6 28403763 28403763 T C ZSCAN23 Missense_Mutation p.E94G 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 6 29454984 29454984 A G MAS1L Silent p.H232H 0.20 TCGA-D8-A1XK-01 6 30530410 30530410 C - PRR3 3'UTR 0.21 TCGA-D8-A1XK-01 6 31431503 31431503 C T HCP5 RNA 0.32 TCGA-D8-A1XK-01 6 31498878 31498878 A G DDX39B Silent p.I358I 0.34 TCGA-D8-A1XK-01 6 31608186 31608186 T C BAG6 Silent p.E1008E 0.44 TCGA-D8-A1XK-01 6 32010078 32010078 T C TNXB Missense_Mutation p.H520R 0.14 tolerated(0.24) benign(0.048) TCGA-D8-A1XK-01 6 32064693 32064693 G A TNXB Missense_Mutation p.R313W 0.45 probably_damaging(0.988) TCGA-D8-A1XK-01 6 32097316 32097316 T A FKBPL Missense_Mutation p.H81L 0.11 tolerated_low_confidence(0.2) benign(0.022) TCGA-D8-A1XK-01 6 33244011 33244011 T A RPS18 Missense_Mutation p.I117N 0.15 deleterious(0.03) possibly_damaging(0.775) TCGA-D8-A1XK-01 6 35473817 35473817 T A TULP1 Missense_Mutation p.Y321F 0.09 tolerated(0.3) possibly_damaging(0.81) TCGA-D8-A1XK-01 6 35745259 35745259 C A CLPSL2 Missense_Mutation p.H36Q 0.11 deleterious(0) possibly_damaging(0.767) TCGA-D8-A1XK-01 6 35773537 35773537 T C LHFPL5 Silent p.G30G 0.15 TCGA-D8-A1XK-01 6 36336758 36336758 A G ETV7 Missense_Mutation p.I252T 0.13 deleterious(0) probably_damaging(0.972) TCGA-D8-A1XK-01 6 38562052 38562052 A G BTBD9 Silent p.P79P 0.22 TCGA-D8-A1XK-01 6 38893841 38893841 G - DNAH8 Frame_Shift_Del p.L3443Yfs*17 0.31 TCGA-D8-A1XK-01 6 39563938 39563938 G T KIF6 Silent p.L246L 0.18 TCGA-D8-A1XK-01 6 42890941 42890941 T C PTCRA Missense_Mutation p.S79P 0.14 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XK-01 6 42934554 42934554 T G PEX6 Missense_Mutation p.S643R 0.37 tolerated(0.11) benign(0.017) TCGA-D8-A1XK-01 6 43018852 43018852 A G CUL7 Missense_Mutation p.F447L 0.14 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 6 43473343 43473343 C A TJAP1 Missense_Mutation p.P475H 0.35 tolerated(0.1) possibly_damaging(0.58) TCGA-D8-A1XK-01 6 43581864 43581864 A G POLH Missense_Mutation p.Y571C 0.45 tolerated(0.18) benign(0.001) TCGA-D8-A1XK-01 6 44232987 44232987 T C NFKBIE Missense_Mutation p.T172A 0.12 tolerated(0.09) benign(0.002) TCGA-D8-A1XK-01 6 44274847 44274847 A G AARS2 Intron 0.13 TCGA-D8-A1XK-01 6 46135809 46135809 A G ENPP5 Missense_Mutation p.V64A 0.14 deleterious(0) probably_damaging(0.958) TCGA-D8-A1XK-01 6 46563859 46563859 T C CYP39A1 Splice_Site p.X311_splice 0.39 TCGA-D8-A1XK-01 6 46793031 46793031 C A MEP1A Silent p.T193T 0.43 TCGA-D8-A1XK-01 6 46802999 46802999 C T MEP1A Silent p.L599L 0.42 TCGA-D8-A1XK-01 6 49403270 49403270 C T MUT Missense_Mutation p.A675T 0.08 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D8-A1XK-01 6 49425402 49425402 A T MUT Splice_Site p.X251_splice 0.30 TCGA-D8-A1XK-01 6 51611517 51611517 A G PKHD1 Splice_Site p.X3333_splice 0.14 TCGA-D8-A1XK-01 6 52103684 52103684 A G IL17F Missense_Mutation p.I33T 0.09 tolerated(0.61) benign(0.002) TCGA-D8-A1XK-01 6 53156753 53156753 C T ELOVL5 Missense_Mutation p.V23I 0.46 deleterious(0.03) benign(0.365) TCGA-D8-A1XK-01 6 55264205 55264205 T C GFRAL Missense_Mutation p.C363R 0.37 deleterious(0) possibly_damaging(0.736) TCGA-D8-A1XK-01 6 56879963 56879963 T A BEND6 Missense_Mutation p.L111M 0.44 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-D8-A1XK-01 6 6251074 6251074 G A F13A1 Silent p.D220D 0.37 TCGA-D8-A1XK-01 6 70935663 70935663 G A COL9A1 Silent p.N851N 0.52 TCGA-D8-A1XK-01 6 72006458 72006458 T C OGFRL1 Silent p.T210T 0.08 TCGA-D8-A1XK-01 6 7414518 7414518 T A RIOK1 Missense_Mutation p.D497E 0.07 tolerated(0.6) benign(0.011) TCGA-D8-A1XK-01 6 74228713 74228713 A G EEF1A1 Missense_Mutation p.V188A 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-D8-A1XK-01 6 8417714 8417714 T C SLC35B3 Missense_Mutation p.Y265C 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 6 86351110 86351110 A T SYNCRIP Missense_Mutation p.D16E 0.29 tolerated(0.55) benign(0.085) TCGA-D8-A1XK-01 6 88049865 88049865 C T SMIM8 Missense_Mutation p.T56I 0.10 deleterious(0.01) benign(0.134) TCGA-D8-A1XK-01 6 88391480 88391480 T C AKIRIN2 Silent p.E79E 0.06 TCGA-D8-A1XK-01 6 88776207 88776207 T C SPACA1 3'UTR 0.37 TCGA-D8-A1XK-01 7 100159981 100159981 C A AGFG2 Missense_Mutation p.P326H 0.34 deleterious(0.01) benign(0.401) TCGA-D8-A1XK-01 7 100184262 100184262 C T FBXO24 5'Flank 0.18 TCGA-D8-A1XK-01 7 100283937 100283937 T C GIGYF1 Missense_Mutation p.S272G 0.21 tolerated(0.42) unknown(0) TCGA-D8-A1XK-01 7 100350027 100350027 A C ZAN Missense_Mutation p.T767P 0.12 unknown(0) TCGA-D8-A1XK-01 7 100491531 100491531 T C ACHE Missense_Mutation p.Y108C 0.13 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XK-01 7 100648643 100648643 T A MUC12 Silent p.P4933P 0.07 TCGA-D8-A1XK-01 7 102669194 102669194 T C FBXL13 Missense_Mutation p.T24A 0.08 tolerated(1) benign(0.001) TCGA-D8-A1XK-01 7 105516288 105516288 T - ATXN7L1 Frame_Shift_Del p.S74Afs*5 0.29 TCGA-D8-A1XK-01 7 107335077 107335077 A G SLC26A4 Silent p.A451A 0.24 TCGA-D8-A1XK-01 7 116165017 116165017 T - CAV1 5'UTR 0.46 TCGA-D8-A1XK-01 7 128452115 128452115 A G CCDC136 Missense_Mutation p.T764A 0.34 deleterious_low_confidence(0.03) benign(0.009) TCGA-D8-A1XK-01 7 128586562 128586563 - C IRF5 Frame_Shift_Ins p.E134* 0.16 TCGA-D8-A1XK-01 7 129474685 129474685 A - UBE2H 3'UTR 0.48 TCGA-D8-A1XK-01 7 133981152 133981152 A G SLC35B4 Missense_Mutation p.I247T 0.21 tolerated(0.06) benign(0.001) TCGA-D8-A1XK-01 7 138210015 138210015 A T TRIM24 Missense_Mutation p.N265I 0.35 deleterious(0) probably_damaging(0.973) TCGA-D8-A1XK-01 7 138774443 138774443 T G ZC3HAV1 Missense_Mutation p.H124P 0.14 deleterious(0.01) probably_damaging(0.924) TCGA-D8-A1XK-01 7 139257859 139257859 T C HIPK2 Silent p.P1137P 0.12 TCGA-D8-A1XK-01 7 143175191 143175191 T C TAS2R41 Missense_Mutation p.Y76H 0.27 tolerated(0.06) benign(0.078) TCGA-D8-A1XK-01 7 148463718 148463718 T C CUL1 Silent p.D285D 0.26 TCGA-D8-A1XK-01 7 149522448 149522448 G A SSPO RNA 0.33 TCGA-D8-A1XK-01 7 150748931 150748931 G T ASIC3 Missense_Mutation p.A417S 0.19 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 7 151664478 151664478 A - GALNTL5 Frame_Shift_Del p.V52Cfs*17 0.34 TCGA-D8-A1XK-01 7 1526286 1526286 A G INTS1 Missense_Mutation p.V984A 0.46 tolerated(0.4) benign(0.001) TCGA-D8-A1XK-01 7 154585811 154585811 A G DPP6 Missense_Mutation p.K387E 0.56 deleterious(0.01) benign(0.028) TCGA-D8-A1XK-01 7 20418860 20418860 T C ITGB8 Missense_Mutation p.V192A 0.39 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 7 2748352 2748352 T C AMZ1 Splice_Site p.X201_splice 0.24 TCGA-D8-A1XK-01 7 47925473 47925473 T C PKD1L1 Missense_Mutation p.R1006G 0.33 tolerated(0.8) benign(0.003) TCGA-D8-A1XK-01 7 48259016 48259016 T A ABCA13 Missense_Mutation p.I118K 0.36 benign(0.146) TCGA-D8-A1XK-01 7 48285189 48285189 T C ABCA13 Missense_Mutation p.F491L 0.29 benign(0.008) TCGA-D8-A1XK-01 7 48407468 48407469 - A ABCA13 Frame_Shift_Ins p.L3591Vfs*4 0.23 TCGA-D8-A1XK-01 7 55273325 55273325 A G EGFR 3'UTR 0.26 TCGA-D8-A1XK-01 7 6063111 6063111 A - AIMP2 Frame_Shift_Del p.A253Pfs*7 0.31 TCGA-D8-A1XK-01 7 64439557 64439557 T C ZNF117 Missense_Mutation p.Q131R 0.23 deleterious(0.01) benign(0.103) TCGA-D8-A1XK-01 7 66474575 66474575 C T TYW1 Silent p.F93F 0.26 TCGA-D8-A1XK-01 7 66490011 66490011 T C TYW1 Splice_Site p.X328_splice 0.26 TCGA-D8-A1XK-01 7 66774043 66774043 T A STAG3L4 RNA 0.26 TCGA-D8-A1XK-01 7 72416772 72416772 A G POM121 Intron 0.28 TCGA-D8-A1XK-01 7 72418792 72418792 T A POM121 Intron 0.29 TCGA-D8-A1XK-01 7 72903631 72903631 A C BAZ1B Missense_Mutation p.L262V 0.16 tolerated(0.16) probably_damaging(0.996) TCGA-D8-A1XK-01 7 74105366 74105366 T C GTF2I Missense_Mutation p.V54A 0.28 deleterious(0.01) benign(0.101) TCGA-D8-A1XK-01 7 74212284 74212284 C T GTF2IRD2 Missense_Mutation p.V523M 0.27 tolerated(0.12) benign(0.02) TCGA-D8-A1XK-01 7 75051330 75051331 AG - POM121C Frame_Shift_Del p.S735Cfs*173 0.37 TCGA-D8-A1XK-01 7 75167410 75167410 G - HIP1 3'UTR 0.39 TCGA-D8-A1XK-01 7 76247566 76247566 T C POMZP3 Silent p.R93R 0.10 TCGA-D8-A1XK-01 7 87825915 87825915 A G ADAM22 3'Flank 0.09 TCGA-D8-A1XK-01 7 90895054 90895054 A C FZD1 Missense_Mutation p.N287H 0.21 tolerated(0.3) benign(0.005) TCGA-D8-A1XK-01 7 92731303 92731303 T C SAMD9 Missense_Mutation p.T1370A 0.17 tolerated(0.48) benign(0.009) TCGA-D8-A1XK-01 7 92731998 92731998 T C SAMD9 Missense_Mutation p.N1138S 0.23 tolerated(0.19) benign(0.086) TCGA-D8-A1XK-01 7 92883184 92883184 T C CCDC132 Silent p.P79P 0.22 TCGA-D8-A1XK-01 7 93540338 93540338 A T GNGT1 3'UTR 0.29 TCGA-D8-A1XK-01 7 94259146 94259146 A G SGCE Silent p.S39S 0.29 TCGA-D8-A1XK-01 7 95657618 95657618 A C DYNC1I1 Silent p.S384S 0.27 TCGA-D8-A1XK-01 7 98524883 98524883 A G TRRAP Silent p.T1023T 0.09 TCGA-D8-A1XK-01 7 99247813 99247813 T C CYP3A5 Silent p.T432T 0.22 TCGA-D8-A1XK-01 7 99998783 99998783 T C ZCWPW1 Missense_Mutation p.S601G 0.17 deleterious(0.02) benign(0.169) TCGA-D8-A1XK-01 8 101178092 101178092 A G SPAG1 Missense_Mutation p.H64R 0.24 tolerated(1) benign(0.002) TCGA-D8-A1XK-01 8 102661727 102661727 G A GRHL2 Silent p.A566A 0.12 TCGA-D8-A1XK-01 8 103842085 103842085 C A AZIN1 Silent p.L328L 0.19 TCGA-D8-A1XK-01 8 105502800 105502801 - T LRP12 3'UTR 0.35 TCGA-D8-A1XK-01 8 109489020 109489020 A G EMC2 Missense_Mutation p.T201A 0.20 deleterious(0) possibly_damaging(0.742) TCGA-D8-A1XK-01 8 113323267 113323267 C T CSMD3 Missense_Mutation p.V2609M 0.20 deleterious(0.03) probably_damaging(0.974) TCGA-D8-A1XK-01 8 119122937 119122937 A T EXT1 Missense_Mutation p.Y117N 0.42 deleterious(0) probably_damaging(0.966) TCGA-D8-A1XK-01 8 119123053 119123053 A T EXT1 Missense_Mutation p.V78E 0.34 tolerated(0.4) benign(0) TCGA-D8-A1XK-01 8 124812115 124812115 T C FAM91A1 Missense_Mutation p.V600A 0.39 deleterious(0.01) probably_damaging(0.945) TCGA-D8-A1XK-01 8 125507778 125507778 A G TATDN1 Missense_Mutation p.L200P 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 8 12957700 12957700 T A DLC1 Missense_Mutation p.I716F 0.37 deleterious(0.01) probably_damaging(0.935) TCGA-D8-A1XK-01 8 131130405 131130405 A G ASAP1 Splice_Site p.X627_splice 0.45 TCGA-D8-A1XK-01 8 135614769 135614769 C T ZFAT Missense_Mutation p.G398D 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 8 141567283 141567283 A G AGO2 Missense_Mutation p.Y311H 0.39 deleterious(0.02) possibly_damaging(0.775) TCGA-D8-A1XK-01 8 141753416 141753416 G A PTK2 Missense_Mutation p.R550W 0.35 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XK-01 8 143866694 143866694 G T LY6D Silent p.A110A 0.21 TCGA-D8-A1XK-01 8 144896281 144896281 A - SCRIB Frame_Shift_Del p.F56Sfs*4 0.18 TCGA-D8-A1XK-01 8 145138727 145138727 T C GPAA1 Silent p.A159A 0.25 TCGA-D8-A1XK-01 8 145579285 145579285 C T FBXL6 Missense_Mutation p.R509H 0.14 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 8 145618530 145618530 G A CPSF1 3'UTR 0.16 TCGA-D8-A1XK-01 8 145660855 145660855 A G TONSL Splice_Site p.X951_splice 0.26 TCGA-D8-A1XK-01 8 145999963 145999963 T C ZNF34 Missense_Mutation p.E124G 0.17 tolerated(0.24) benign(0.115) TCGA-D8-A1XK-01 8 17794852 17794852 A G PCM1 Silent p.K102K 0.12 TCGA-D8-A1XK-01 8 17819685 17819685 T C PCM1 Splice_Site p.X821_splice 0.22 TCGA-D8-A1XK-01 8 17824567 17824567 T C PCM1 Silent p.S1100S 0.34 TCGA-D8-A1XK-01 8 22210611 22210611 T C PIWIL2 Missense_Mutation p.V848A 0.29 tolerated(0.39) benign(0.048) TCGA-D8-A1XK-01 8 22464757 22464757 G C CCAR2 Missense_Mutation p.G136R 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 8 22864368 22864368 A G RHOBTB2 Missense_Mutation p.I226V 0.39 tolerated(0.08) probably_damaging(0.946) TCGA-D8-A1XK-01 8 22864740 22864740 C T RHOBTB2 Missense_Mutation p.H350Y 0.26 tolerated(1) benign(0.003) TCGA-D8-A1XK-01 8 25276864 25276864 T C GNRH1 3'UTR 0.09 TCGA-D8-A1XK-01 8 27690580 27690581 - T PBK Frame_Shift_Ins p.K18Efs*50 0.16 TCGA-D8-A1XK-01 8 28827600 28827600 T G HMBOX1 Missense_Mutation p.F22V 0.37 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 8 30701524 30701524 T C TEX15 Silent p.V1670V 0.27 TCGA-D8-A1XK-01 8 30853884 30853885 - A PURG 3'UTR 0.35 TCGA-D8-A1XK-01 8 35624486 35624486 C T UNC5D Missense_Mutation p.R794C 0.38 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 8 37701875 37701875 T A BRF2 3'UTR 0.44 TCGA-D8-A1XK-01 8 37797493 37797493 T A GOT1L1 Missense_Mutation p.S19C 0.07 deleterious(0.02) possibly_damaging(0.784) TCGA-D8-A1XK-01 8 38117571 38117571 A G DDHD2 Missense_Mutation p.T690A 0.32 deleterious(0.02) possibly_damaging(0.776) TCGA-D8-A1XK-01 8 38287248 38287248 T G FGFR1 Missense_Mutation p.S137R 0.19 tolerated(0.67) benign(0.071) TCGA-D8-A1XK-01 8 42227386 42227386 T C POLB Missense_Mutation p.Y265H 0.08 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 8 42693202 42693202 T C THAP1 Missense_Mutation p.E182G 0.21 deleterious(0.05) benign(0.057) TCGA-D8-A1XK-01 8 43212102 43212102 C T POTEA RNA 0.42 TCGA-D8-A1XK-01 8 48713538 48713538 T C PRKDC Missense_Mutation p.N3310S 0.29 benign(0.001) TCGA-D8-A1XK-01 8 52232330 52232330 T C PXDNL 3'UTR 0.36 TCGA-D8-A1XK-01 8 53084528 53084528 T C ST18 Missense_Mutation p.K298R 0.37 tolerated(0.81) benign(0.005) TCGA-D8-A1XK-01 8 61769388 61769388 A G CHD7 Missense_Mutation p.K2517E 0.15 possibly_damaging(0.621) TCGA-D8-A1XK-01 8 6302399 6302399 C T MCPH1 Nonsense_Mutation p.Q386* 0.20 TCGA-D8-A1XK-01 8 64122289 64122289 T A YTHDF3 3'UTR 0.34 TCGA-D8-A1XK-01 8 64122486 64122486 C A YTHDF3 3'UTR 0.45 TCGA-D8-A1XK-01 8 66988984 66988984 T C DNAJC5B Missense_Mutation p.I70T 0.17 tolerated(0.2) possibly_damaging(0.483) TCGA-D8-A1XK-01 8 67705945 67705945 T - SGK3 5'UTR 0.35 TCGA-D8-A1XK-01 8 72967993 72967993 T C TRPA1 Missense_Mutation p.N431S 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-D8-A1XK-01 8 73958550 73958550 A G TERF1 3'UTR 0.70 TCGA-D8-A1XK-01 8 77764386 77764386 A G ZFHX4 Missense_Mutation p.I1743M 0.37 possibly_damaging(0.506) TCGA-D8-A1XK-01 8 80677294 80677294 A - HEY1 3'UTR 0.54 TCGA-D8-A1XK-01 8 82606776 82606776 T C SLC10A5 Silent p.L144L 0.34 TCGA-D8-A1XK-01 8 8747996 8747996 A T MFHAS1 Missense_Mutation p.V858E 0.37 tolerated(0.2) benign(0.001) TCGA-D8-A1XK-01 8 95503934 95503934 A G KIAA1429 Missense_Mutation p.I1671T 0.23 deleterious(0.05) benign(0.188) TCGA-D8-A1XK-01 8 95861747 95861747 G A INTS8 Missense_Mutation p.A440T 0.24 tolerated(0.06) possibly_damaging(0.773) TCGA-D8-A1XK-01 8 95888477 95888477 T C INTS8 Missense_Mutation p.Y931H 0.13 deleterious(0.03) possibly_damaging(0.654) TCGA-D8-A1XK-01 8 95944319 95944319 A C TP53INP1 Intron 0.09 TCGA-D8-A1XK-01 8 97321789 97321789 T C PTDSS1 Missense_Mutation p.Y338H 0.26 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 9 100245337 100245337 T C TDRD7 Silent p.T873T 0.13 TCGA-D8-A1XK-01 9 100405484 100405484 A G NCBP1 Splice_Site p.X75_splice 0.07 TCGA-D8-A1XK-01 9 101498739 101498739 G T ANKS6 3'UTR 0.26 TCGA-D8-A1XK-01 9 104086489 104086489 T C LPPR1 3'UTR 0.30 TCGA-D8-A1XK-01 9 107521626 107521626 A G NIPSNAP3A 3'UTR 0.11 TCGA-D8-A1XK-01 9 113562979 113562979 T - MUSK Frame_Shift_Del p.Y776Ifs*92 0.12 TCGA-D8-A1XK-01 9 116859592 116859592 A T KIF12 Missense_Mutation p.L74H 0.20 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XK-01 9 116859594 116859594 T C KIF12 Silent p.E73E 0.20 TCGA-D8-A1XK-01 9 116860018 116860018 C A KIF12 5'UTR 0.34 TCGA-D8-A1XK-01 9 125154527 125154527 T A PTGS1 Missense_Mutation p.F502I 0.11 deleterious(0) possibly_damaging(0.882) TCGA-D8-A1XK-01 9 127701046 127701046 G C GOLGA1 5'UTR 0.13 TCGA-D8-A1XK-01 9 130883442 130883442 C T PTGES2 Silent p.E372E 0.40 TCGA-D8-A1XK-01 9 130982300 130982300 A G DNM1 Missense_Mutation p.D208G 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A1XK-01 9 13176133 13176133 A G MPDZ Splice_Site p.X977_splice 0.14 TCGA-D8-A1XK-01 9 131767496 131767496 T C NUP188 Missense_Mutation p.L1502S 0.08 deleterious(0) benign(0.125) TCGA-D8-A1XK-01 9 131848990 131848990 C A DOLPP1 Missense_Mutation p.P198H 0.17 tolerated(0.13) probably_damaging(0.968) TCGA-D8-A1XK-01 9 13216858 13216858 G T MPDZ Missense_Mutation p.P402H 0.17 deleterious(0) possibly_damaging(0.477) TCGA-D8-A1XK-01 9 13247781 13247781 A G MPDZ Silent p.H12H 0.08 TCGA-D8-A1XK-01 9 134073368 134073368 C T NUP214 Missense_Mutation p.A1496V 0.34 benign(0.389) TCGA-D8-A1XK-01 9 134321980 134321980 T C PRRC2B Missense_Mutation p.M269T 0.14 tolerated(0.16) benign(0.003) TCGA-D8-A1XK-01 9 134504050 134504050 T C RAPGEF1 Silent p.P302P 0.08 TCGA-D8-A1XK-01 9 135277582 135277582 T G TTF1 Missense_Mutation p.E209D 0.11 tolerated(0.1) possibly_damaging(0.636) TCGA-D8-A1XK-01 9 135946438 135946438 G T CEL Missense_Mutation p.G520C 0.12 tolerated(0.1) probably_damaging(0.914) TCGA-D8-A1XK-01 9 136379898 136379898 A T TMEM8C Missense_Mutation p.Y176N 0.26 deleterious(0) probably_damaging(0.921) TCGA-D8-A1XK-01 9 138011606 138011606 A G OLFM1 Missense_Mutation p.Y329C 0.12 deleterious(0) probably_damaging(0.98) TCGA-D8-A1XK-01 9 138662203 138662203 A G KCNT1 Missense_Mutation p.E560G 0.40 deleterious(0) probably_damaging(0.973) TCGA-D8-A1XK-01 9 139277821 139277821 A G SNAPC4 Silent p.P600P 0.54 TCGA-D8-A1XK-01 9 139753475 139753475 T A MAMDC4 Missense_Mutation p.V992E 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 9 140137986 140137986 A G TUBB4B Missense_Mutation p.E439G 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-D8-A1XK-01 9 140138190 140138190 A G FAM166A Missense_Mutation p.Y306H 0.07 deleterious(0) probably_damaging(0.924) TCGA-D8-A1XK-01 9 14722453 14722453 T A CER1 Missense_Mutation p.Q73L 0.06 deleterious(0.01) benign(0.277) TCGA-D8-A1XK-01 9 15171905 15171905 A C TTC39B 3'UTR 0.14 TCGA-D8-A1XK-01 9 17235755 17235755 G T CNTLN Nonsense_Mutation p.E212* 0.14 TCGA-D8-A1XK-01 9 17409437 17409437 A T CNTLN Missense_Mutation p.Q921L 0.09 deleterious(0.03) benign(0.053) TCGA-D8-A1XK-01 9 19380101 19380101 T C RPS6 Intron 0.07 TCGA-D8-A1XK-01 9 20995576 20995576 T G FOCAD Missense_Mutation p.V1785G 0.06 tolerated(0.34) benign(0) TCGA-D8-A1XK-01 9 21166204 21166204 A G IFNA21 Silent p.N136N 0.10 TCGA-D8-A1XK-01 9 21201726 21201726 A G IFNA7 Missense_Mutation p.F147L 0.18 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XK-01 9 21334379 21334379 A G KLHL9 Silent p.I160I 0.20 TCGA-D8-A1XK-01 9 26917106 26917106 T C PLAA Missense_Mutation p.D492G 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-D8-A1XK-01 9 32487531 32487531 A G DDX58 Missense_Mutation p.V438A 0.19 tolerated(0.28) benign(0.055) TCGA-D8-A1XK-01 9 33120602 33120602 C T B4GALT1 Silent p.A217A 0.16 TCGA-D8-A1XK-01 9 33256802 33256802 T C BAG1 Silent p.T294T 0.08 TCGA-D8-A1XK-01 9 34256370 34256370 T G KIF24 Missense_Mutation p.S1079R 0.36 tolerated(0.23) benign(0.003) TCGA-D8-A1XK-01 9 34257713 34257713 C T KIF24 Missense_Mutation p.G631D 0.08 tolerated(0.43) benign(0.031) TCGA-D8-A1XK-01 9 35616461 35616461 C A CD72 Intron 0.27 TCGA-D8-A1XK-01 9 35737755 35737755 A G GBA2 Missense_Mutation p.M832T 0.10 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 9 37498161 37498161 T C POLR1E Missense_Mutation p.C276R 0.06 deleterious(0.01) benign(0.026) TCGA-D8-A1XK-01 9 441391 441391 A G DOCK8 Missense_Mutation p.R1777G 0.15 deleterious(0) benign(0.089) TCGA-D8-A1XK-01 9 464280 464280 T C DOCK8 3'UTR 0.14 TCGA-D8-A1XK-01 9 5089672 5089672 A G JAK2 Splice_Site p.X858_splice 0.06 TCGA-D8-A1XK-01 9 5163892 5163892 T C INSL6 3'UTR 0.22 TCGA-D8-A1XK-01 9 5787132 5787132 T A ERMP1 3'UTR 0.07 TCGA-D8-A1XK-01 9 6012611 6012611 T C RANBP6 Silent p.E999E 0.10 TCGA-D8-A1XK-01 9 7103861 7103861 C - KDM4C Frame_Shift_Del p.N869Tfs*2 0.22 TCGA-D8-A1XK-01 9 71827470 71827470 G T TJP2 Missense_Mutation p.G54C 0.11 deleterious(0.04) probably_damaging(0.919) TCGA-D8-A1XK-01 9 72333548 72333548 T C PTAR1 Intron 0.09 TCGA-D8-A1XK-01 9 72435881 72435881 G A C9orf135 Missense_Mutation p.R29H 0.31 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XK-01 9 77457135 77457135 C A TRPM6 Missense_Mutation p.D93Y 0.26 deleterious(0) possibly_damaging(0.813) TCGA-D8-A1XK-01 9 77598497 77598497 T C C9orf41 3'UTR 0.36 TCGA-D8-A1XK-01 9 8376723 8376723 T C PTPRD Missense_Mutation p.K1464E 0.06 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 9 90114005 90114005 A G DAPK1 Missense_Mutation p.R5G 0.10 tolerated(0.53) benign(0.016) TCGA-D8-A1XK-01 9 94812243 94812243 T A SPTLC1 Missense_Mutation p.N296I 0.19 deleterious(0.03) benign(0.084) TCGA-D8-A1XK-01 9 95773518 95773518 A G FGD3 Silent p.T333T 0.14 TCGA-D8-A1XK-01 X 100652887 100652887 A G GLA Silent p.T400T 0.35 TCGA-D8-A1XK-01 X 102564877 102564877 T G BEX2 Missense_Mutation p.N42H 0.09 deleterious(0) possibly_damaging(0.6) TCGA-D8-A1XK-01 X 102632568 102632568 C T NGFRAP1 Missense_Mutation p.A50V 0.22 tolerated(0.13) benign(0.001) TCGA-D8-A1XK-01 X 102974186 102974186 G A GLRA4 Silent p.C244C 0.11 TCGA-D8-A1XK-01 X 105150446 105150446 A - NRK Frame_Shift_Del p.N297Ifs*20 0.23 TCGA-D8-A1XK-01 X 115304246 115304246 T C AGTR2 Missense_Mutation p.L238S 0.20 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XK-01 X 117053569 117053569 T C KLHL13 Missense_Mutation p.D165G 0.27 tolerated(0.27) benign(0.005) TCGA-D8-A1XK-01 X 118971805 118971805 T G UPF3B Missense_Mutation p.K406T 0.18 deleterious(0.03) benign(0.094) TCGA-D8-A1XK-01 X 119388224 119388224 T C ZBTB33 Silent p.S318S 0.31 TCGA-D8-A1XK-01 X 119425191 119425191 A G TMEM255A Missense_Mutation p.V90A 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-D8-A1XK-01 X 122765548 122765548 A G THOC2 Silent p.H824H 0.33 TCGA-D8-A1XK-01 X 12937583 12937583 T G TLR8 Missense_Mutation p.S142A 0.25 tolerated(0.96) benign(0.001) TCGA-D8-A1XK-01 X 134991926 134991926 A G SAGE1 Missense_Mutation p.T571A 0.11 tolerated(0.22) probably_damaging(0.953) TCGA-D8-A1XK-01 X 135480086 135480086 C T GPR112 Missense_Mutation p.A2744V 0.17 tolerated(1) benign(0.01) TCGA-D8-A1XK-01 X 13626502 13626502 A G EGFL6 Missense_Mutation p.T239A 0.25 deleterious(0.02) benign(0.068) TCGA-D8-A1XK-01 X 138678873 138678873 T C MCF2 Missense_Mutation p.I780M 0.05 tolerated(0.07) benign(0.01) TCGA-D8-A1XK-01 X 14027287 14027287 C T GEMIN8 Silent p.R158R 0.17 TCGA-D8-A1XK-01 X 1428338 1428338 G A CSF2RA Missense_Mutation p.R424H 0.28 tolerated(0.17) benign(0.007) TCGA-D8-A1XK-01 X 14891616 14891616 C A MOSPD2 5'UTR 0.17 TCGA-D8-A1XK-01 X 149013887 149013888 - T MAGEA8 Frame_Shift_Ins p.A282Cfs*2 0.24 TCGA-D8-A1XK-01 X 152083321 152083321 G A ZNF185 Silent p.T34T 0.39 TCGA-D8-A1XK-01 X 152722057 152722057 C A HAUS7 Nonsense_Mutation p.E177* 0.08 TCGA-D8-A1XK-01 X 152773843 152773843 G A BGN Silent p.P349P 0.23 TCGA-D8-A1XK-01 X 153047249 153047249 G A SRPK3 Silent p.T117T 0.27 TCGA-D8-A1XK-01 X 15364199 15364199 T G FIGF 3'UTR 0.20 TCGA-D8-A1XK-01 X 153664078 153664078 T A ATP6AP1 Nonsense_Mutation p.C418* 0.11 TCGA-D8-A1XK-01 X 153691781 153691781 C T PLXNA3 Silent p.P455P 0.15 TCGA-D8-A1XK-01 X 154132573 154132573 T C F8 Missense_Mutation p.H1938R 0.31 deleterious(0.04) possibly_damaging(0.89) TCGA-D8-A1XK-01 X 16847877 16847877 A G TXLNG Missense_Mutation p.Y283C 0.26 tolerated(0.06) probably_damaging(0.976) TCGA-D8-A1XK-01 X 17750097 17750097 A G NHS Missense_Mutation p.N1469S 0.26 tolerated(1) benign(0.002) TCGA-D8-A1XK-01 X 18192346 18192346 G A BEND2 Silent p.N595N 0.31 TCGA-D8-A1XK-01 X 18221772 18221772 A G BEND2 Silent p.N252N 0.24 TCGA-D8-A1XK-01 X 18807363 18807363 A G PPEF1 Missense_Mutation p.E346G 0.19 tolerated(0.06) possibly_damaging(0.491) TCGA-D8-A1XK-01 X 24089733 24089733 A T EIF2S3 Silent p.V357V 0.13 TCGA-D8-A1XK-01 X 2852962 2852962 T C ARSE Missense_Mutation p.R561G 0.22 tolerated(0.37) benign(0) TCGA-D8-A1XK-01 X 31165612 31165612 C T DMD Missense_Mutation p.R3526H 0.24 possibly_damaging(0.715) TCGA-D8-A1XK-01 X 31341728 31341728 G C DMD Missense_Mutation p.P3071A 0.17 possibly_damaging(0.492) TCGA-D8-A1XK-01 X 34962381 34962381 C A FAM47B Missense_Mutation p.S478Y 0.18 tolerated(1) benign(0.413) TCGA-D8-A1XK-01 X 35984797 35984797 T C CXorf22 Missense_Mutation p.F509S 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XK-01 X 46508119 46508119 A G SLC9A7 Splice_Site p.X487_splice 0.05 TCGA-D8-A1XK-01 X 46952394 46952394 A G RGN 3'UTR 0.42 TCGA-D8-A1XK-01 X 47432291 47432291 T A SYN1 Missense_Mutation p.K697M 0.19 deleterious(0) possibly_damaging(0.781) TCGA-D8-A1XK-01 X 47496235 47496235 T C ELK1 Missense_Mutation p.K427R 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-D8-A1XK-01 X 48791735 48791735 A G OTUD5 Splice_Site p.X358_splice 0.16 TCGA-D8-A1XK-01 X 49050712 49050712 C T SYP Missense_Mutation p.V112M 0.09 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XK-01 X 50135430 50135430 T C DGKK RNA 0.18 TCGA-D8-A1XK-01 X 53106578 53106578 C T GPR173 Silent p.L259L 0.21 TCGA-D8-A1XK-01 X 53655570 53655570 A G HUWE1 Silent p.D372D 0.17 TCGA-D8-A1XK-01 X 54817417 54817417 C T ITIH6 Missense_Mutation p.G157S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1XK-01 X 55514450 55514450 A T USP51 Missense_Mutation p.I308N 0.30 tolerated(0.32) benign(0.001) TCGA-D8-A1XK-01 X 57020909 57020909 T C SPIN3 Missense_Mutation p.M158V 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1XK-01 X 57146207 57146207 A G SPIN2B 3'UTR 0.23 TCGA-D8-A1XK-01 X 62944456 62944456 G T ARHGEF9 Missense_Mutation p.Q49K 0.20 tolerated(0.1) benign(0.017) TCGA-D8-A1XK-01 X 66943683 66943683 A T AR Nonstop_Mutation p.*921Cext*95 0.09 TCGA-D8-A1XK-01 X 68725672 68725672 A - FAM155B Frame_Shift_Del p.N185Tfs*40 0.31 TCGA-D8-A1XK-01 X 69269746 69269746 G A AWAT2 Silent p.L13L 0.18 TCGA-D8-A1XK-01 X 69595200 69595200 T C KIF4A Splice_Site p.X641_splice 0.10 TCGA-D8-A1XK-01 X 69650967 69650967 A G GDPD2 Missense_Mutation p.H484R 0.19 tolerated_low_confidence(1) benign(0) TCGA-D8-A1XK-01 X 70328515 70328515 A G IL2RG Missense_Mutation p.V263A 0.22 deleterious(0.04) possibly_damaging(0.76) TCGA-D8-A1XK-01 X 70774360 70774360 T A OGT Intron 0.34 TCGA-D8-A1XK-01 X 73812354 73812354 G A RLIM Missense_Mutation p.R266W 0.31 deleterious(0.04) unknown(0) TCGA-D8-A1XK-01 X 73814166 73814166 T C RLIM Silent p.P76P 0.17 TCGA-D8-A1XK-01 X 74644504 74644504 C T ZDHHC15 Missense_Mutation p.R240K 0.20 tolerated(1) benign(0.004) TCGA-D8-A1XK-01 X 76940063 76940063 A C ATRX Missense_Mutation p.L229V 0.24 probably_damaging(0.975) TCGA-D8-A1XK-01 X 76940066 76940066 T A ATRX Missense_Mutation p.N228Y 0.25 probably_damaging(0.998) TCGA-D8-A1XK-01 X 77301832 77301832 G A ATP7A Missense_Mutation p.R1423Q 0.33 tolerated(0.74) benign(0.006) TCGA-D8-A1XK-01 X 79939568 79939568 T C BRWD3 Missense_Mutation p.K1392E 0.22 deleterious(0.02) probably_damaging(0.951) TCGA-D8-A1XK-01 X 83128683 83128683 A - CYLC1 Frame_Shift_Del p.K324Rfs*3 0.20 TCGA-D8-A1XK-01 X 86888818 86888818 T C KLHL4 Missense_Mutation p.V540A 0.16 deleterious(0.01) possibly_damaging(0.877) TCGA-D8-A1XK-01 X 86924298 86924298 C T KLHL4 Intron 0.29 TCGA-D8-A1XK-01 X 96139824 96139824 G A RPA4 Missense_Mutation p.R172H 0.18 tolerated(0.71) benign(0.006) TCGA-D8-A1XL-01 10 1208497 1208497 G T LINC00200 RNA 0.26 TCGA-D8-A1XL-01 10 123258034 123258034 A T FGFR2 Missense_Mutation p.N550K 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A1XL-01 10 126673532 126673532 G C ZRANB1 Missense_Mutation p.E700Q 0.15 tolerated(0.2) unknown(0) TCGA-D8-A1XL-01 10 33491738 33491738 G C NRP1 Intron 0.10 TCGA-D8-A1XL-01 10 50530920 50530920 A C C10orf71 Missense_Mutation p.E110D 0.16 tolerated(0.17) benign(0.078) TCGA-D8-A1XL-01 10 61926346 61926346 T C ANK3 Intron 0.10 TCGA-D8-A1XL-01 11 113815320 113815320 C T HTR3B Silent p.A311A 0.16 TCGA-D8-A1XL-01 11 122756780 122756780 G C C11orf63 Missense_Mutation p.D75H 0.12 deleterious(0.01) possibly_damaging(0.889) TCGA-D8-A1XL-01 11 126396467 126396467 G A KIRREL3 Silent p.D83D 0.33 TCGA-D8-A1XL-01 11 55541722 55541722 G A OR5D13 Missense_Mutation p.S270N 0.23 tolerated(0.18) benign(0.008) TCGA-D8-A1XL-01 11 56230715 56230715 T C OR5M9 Missense_Mutation p.S55G 0.31 deleterious(0) benign(0.066) TCGA-D8-A1XL-01 11 57970919 57970919 C A OR1S2 Missense_Mutation p.Q245H 0.20 tolerated(0.06) possibly_damaging(0.571) TCGA-D8-A1XL-01 11 58207097 58207097 G T OR5B12 Missense_Mutation p.F176L 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D8-A1XL-01 11 61026440 61026440 G C VWCE Missense_Mutation p.L859V 0.30 tolerated_low_confidence(0.21) benign(0.098) TCGA-D8-A1XL-01 11 62948206 62948206 C - SLC22A25 Frame_Shift_Del p.K334Sfs*23 0.15 TCGA-D8-A1XL-01 11 6643297 6643297 G C DCHS1 Missense_Mutation p.L3204V 0.11 deleterious(0) possibly_damaging(0.881) TCGA-D8-A1XL-01 11 6816236 6816236 G A OR6A2 Missense_Mutation p.S235L 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-D8-A1XL-01 11 71712371 71712371 G C IL18BP Splice_Site p.X120_splice 0.12 TCGA-D8-A1XL-01 11 83172880 83172880 A G DLG2 Intron 0.24 TCGA-D8-A1XL-01 12 124343746 124343746 C T DNAH10 Missense_Mutation p.T2109M 0.29 probably_damaging(0.998) TCGA-D8-A1XL-01 12 124418005 124418005 C T DNAH10 Missense_Mutation p.T4357I 0.25 probably_damaging(0.927) TCGA-D8-A1XL-01 12 129028531 129028531 T C TMEM132C Missense_Mutation p.L335P 0.22 deleterious(0.01) probably_damaging(0.937) TCGA-D8-A1XL-01 12 14849430 14849430 T A GUCY2C 5'UTR 0.18 TCGA-D8-A1XL-01 12 21370146 21370146 A G SLCO1B1 Missense_Mutation p.T531A 0.08 tolerated(0.22) benign(0.04) TCGA-D8-A1XL-01 12 56211512 56211512 C A SARNP 5'UTR 0.16 TCGA-D8-A1XL-01 12 57167880 57167880 C G HSD17B6 Missense_Mutation p.L82V 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-D8-A1XL-01 12 70964942 70964942 T G PTPRB Silent p.V1078V 0.29 TCGA-D8-A1XL-01 12 7548822 7548822 G C CD163L1 Missense_Mutation p.T640R 0.20 tolerated(0.29) benign(0.004) TCGA-D8-A1XL-01 13 32913428 32913428 G - BRCA2 Frame_Shift_Del p.E1646Kfs*24 0.62 TCGA-D8-A1XL-01 14 106321897 106321897 C T IGHM Missense_Mutation p.V113M 0.25 tolerated(0.13) possibly_damaging(0.775) TCGA-D8-A1XL-01 14 24567421 24567421 C A PCK2 Silent p.A95A 0.17 TCGA-D8-A1XL-01 14 47687332 47687332 T A MDGA2 Missense_Mutation p.T163S 0.17 deleterious(0) benign(0.435) TCGA-D8-A1XL-01 14 58925191 58925191 A G KIAA0586 Silent p.R581R 0.17 TCGA-D8-A1XL-01 14 65270474 65270474 G A SPTB Missense_Mutation p.R109C 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A1XL-01 14 77323744 77323744 A G C14orf166B Missense_Mutation p.M344V 0.20 tolerated(1) benign(0.002) TCGA-D8-A1XL-01 14 91810002 91810002 C G CCDC88C Splice_Site p.X114_splice 0.27 TCGA-D8-A1XL-01 14 93673593 93673593 C T UBR7 5'UTR 0.33 TCGA-D8-A1XL-01 16 11940658 11940658 C T RSL1D1 Missense_Mutation p.E143K 0.40 deleterious(0) probably_damaging(0.98) TCGA-D8-A1XL-01 17 28511883 28511883 C T NSRP1 Missense_Mutation p.R290W 0.19 deleterious(0.01) benign(0.012) TCGA-D8-A1XL-01 17 29632390 29632390 G T EVI2B Missense_Mutation p.Q80K 0.37 tolerated(0.16) possibly_damaging(0.486) TCGA-D8-A1XL-01 17 38182463 38182463 C T MED24 Missense_Mutation p.R644H 0.10 deleterious(0.01) possibly_damaging(0.806) TCGA-D8-A1XL-01 17 39550341 39550341 C G KRT31 Missense_Mutation p.C393S 0.14 tolerated(0.16) possibly_damaging(0.879) TCGA-D8-A1XL-01 17 5461874 5461874 G A NLRP1 Silent p.H714H 0.62 TCGA-D8-A1XL-01 17 60064428 60064433 GTCTGA - MED13 In_Frame_Del p.S774_D775del 0.14 TCGA-D8-A1XL-01 17 73555430 73555430 C G LLGL2 Missense_Mutation p.Q157E 0.10 tolerated(0.77) benign(0.001) TCGA-D8-A1XL-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.42 deleterious(0) probably_damaging(1) TCGA-D8-A1XL-01 17 8110509 8110509 A G AURKB Missense_Mutation p.I128T 0.22 deleterious(0) probably_damaging(0.932) TCGA-D8-A1XL-01 19 10659619 10659619 A T ATG4D Missense_Mutation p.D292V 0.20 tolerated(0.12) benign(0.039) TCGA-D8-A1XL-01 19 17039931 17039931 A T CPAMD8 Missense_Mutation p.S1036T 0.15 tolerated(0.21) benign(0.209) TCGA-D8-A1XL-01 19 54444907 54444907 G A CACNG7 Intron 0.39 TCGA-D8-A1XL-01 19 55147063 55147063 G A LILRB1 Intron 0.18 TCGA-D8-A1XL-01 19 8808499 8808499 C G ACTL9 Missense_Mutation p.V185L 0.26 tolerated(0.09) benign(0.389) TCGA-D8-A1XL-01 19 9492136 9492136 T G ZNF177 Missense_Mutation p.F377V 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XL-01 1 100961587 100961587 C A CDC14A Missense_Mutation p.A427E 0.31 deleterious(0.05) benign(0.343) TCGA-D8-A1XL-01 1 152275600 152275600 T C FLG Missense_Mutation p.D3921G 0.14 unknown(0) TCGA-D8-A1XL-01 1 154841911 154841911 G T KCNN3 Missense_Mutation p.S177Y 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-D8-A1XL-01 1 182993128 182993128 G A LAMC1 Missense_Mutation p.D93N 0.56 tolerated(0.08) benign(0.109) TCGA-D8-A1XL-01 1 186122990 186122990 G A HMCN1 Missense_Mutation p.V5043I 0.20 benign(0.002) TCGA-D8-A1XL-01 1 190067803 190067803 A T BRINP3 Missense_Mutation p.M549K 0.16 deleterious(0) probably_damaging(0.942) TCGA-D8-A1XL-01 1 227288919 227288919 G T CDC42BPA Missense_Mutation p.P675T 0.12 tolerated(0.15) benign(0.013) TCGA-D8-A1XL-01 1 231344976 231344976 C A TRIM67 Missense_Mutation p.H701Q 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-D8-A1XL-01 1 33985410 33985410 A G CSMD2 Splice_Site p.X3435_splice 0.12 TCGA-D8-A1XL-01 1 51761833 51761833 T C TTC39A Missense_Mutation p.I359V 0.20 tolerated(1) benign(0.002) TCGA-D8-A1XL-01 1 57491653 57491654 - G DAB1 Frame_Shift_Ins p.T263Hfs*7 0.23 TCGA-D8-A1XL-01 1 93297636 93297636 C A RPL5 5'UTR 0.39 TCGA-D8-A1XL-01 20 33501263 33501263 G C ACSS2 Silent p.L178L 0.20 TCGA-D8-A1XL-01 20 33501264 33501264 G T ACSS2 Missense_Mutation p.A179S 0.19 deleterious(0.03) benign(0.439) TCGA-D8-A1XL-01 20 45179202 45179202 T - OCSTAMP 5'UTR 0.29 TCGA-D8-A1XL-01 21 31812853 31812853 T A KRTAP15-1 Missense_Mutation p.S70T 0.31 deleterious(0.03) benign(0.187) TCGA-D8-A1XL-01 21 39671727 39671727 C A KCNJ15 Missense_Mutation p.H182N 0.31 tolerated(0.21) benign(0.002) TCGA-D8-A1XL-01 22 20720878 20720878 C A USP41 Missense_Mutation p.E290D 0.37 tolerated(0.24) benign(0.002) TCGA-D8-A1XL-01 22 31532946 31532946 G T PLA2G3 Missense_Mutation p.Q383K 0.11 tolerated(0.05) possibly_damaging(0.622) TCGA-D8-A1XL-01 2 182542979 182542979 C A NEUROD1 Missense_Mutation p.M203I 0.35 tolerated(0.31) benign(0.001) TCGA-D8-A1XL-01 2 26587746 26587746 T C EPT1 Missense_Mutation p.F58S 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XL-01 2 27373074 27373074 T A TCF23 Silent p.A102A 0.11 TCGA-D8-A1XL-01 2 29294367 29294367 C A C2orf71 Missense_Mutation p.A921S 0.19 tolerated(0.59) benign(0.017) TCGA-D8-A1XL-01 3 119378865 119378865 G T POPDC2 Missense_Mutation p.Q136K 0.23 tolerated(0.32) benign(0.02) TCGA-D8-A1XL-01 3 121217489 121217489 G C POLQ Missense_Mutation p.T663S 0.18 tolerated(0.07) benign(0.009) TCGA-D8-A1XL-01 3 129195606 129195606 C G IFT122 Missense_Mutation p.T421S 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-D8-A1XL-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.87 tolerated(0.21) possibly_damaging(0.893) TCGA-D8-A1XL-01 3 19975531 19975531 C T EFHB 5'UTR 0.59 TCGA-D8-A1XL-01 3 36485094 36485094 A G STAC Missense_Mutation p.K117R 0.19 tolerated(0.5) probably_damaging(0.951) TCGA-D8-A1XL-01 3 48629805 48629805 C A COL7A1 Missense_Mutation p.V358L 0.25 unknown(0) TCGA-D8-A1XL-01 3 52822303 52822303 C T ITIH1 Silent p.C687C 0.13 TCGA-D8-A1XL-01 4 109672126 109672126 T A ETNPPL Missense_Mutation p.I223F 0.19 tolerated(0.17) probably_damaging(0.978) TCGA-D8-A1XL-01 4 121739572 121739572 C A PRDM5 Nonsense_Mutation p.E196* 0.19 TCGA-D8-A1XL-01 4 183714346 183714346 G A TENM3 Missense_Mutation p.R2174H 0.15 tolerated(0.06) possibly_damaging(0.84) TCGA-D8-A1XL-01 4 52861781 52861782 - A LRRC66 Frame_Shift_Ins p.I470Nfs*3 0.18 TCGA-D8-A1XL-01 4 54362419 54362419 C G LNX1 Missense_Mutation p.R374T 0.22 tolerated(0.41) benign(0.007) TCGA-D8-A1XL-01 5 180684356 180684356 A G TRIM52 3'UTR 0.28 TCGA-D8-A1XL-01 5 96518917 96518917 G A CTD-2215E18.1 Missense_Mutation p.D80N 0.67 possibly_damaging(0.737) TCGA-D8-A1XL-01 6 136599066 136599071 CGGCCC - BCLAF1 In_Frame_Del p.R316_R318delinsS 0.15 TCGA-D8-A1XL-01 6 18122254 18122254 T G NHLRC1 Missense_Mutation p.D195A 0.11 deleterious(0.04) possibly_damaging(0.669) TCGA-D8-A1XL-01 6 25801134 25801134 C G SLC17A1 Missense_Mutation p.G418A 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XL-01 6 27879388 27879388 G A OR2B2 Missense_Mutation p.A237V 0.15 tolerated(0.11) possibly_damaging(0.521) TCGA-D8-A1XL-01 6 30513924 30513924 C T GNL1 Silent p.E583E 0.19 TCGA-D8-A1XL-01 6 42585064 42585064 C T UBR2 Silent p.T423T 0.20 TCGA-D8-A1XL-01 6 44274104 44274104 C T AARS2 Missense_Mutation p.E405K 0.12 deleterious(0) probably_damaging(0.941) TCGA-D8-A1XL-01 6 69348974 69348974 C A BAI3 Missense_Mutation p.T136N 0.12 tolerated(0.29) benign(0) TCGA-D8-A1XL-01 7 50771567 50771567 C G GRB10 Silent p.P30P 0.07 TCGA-D8-A1XL-01 7 57528859 57528859 A G ZNF716 Missense_Mutation p.H231R 0.43 deleterious(0.03) benign(0.018) TCGA-D8-A1XL-01 7 86537782 86537782 C A KIAA1324L Missense_Mutation p.D813Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XL-01 7 89939392 89939392 G A C7orf63 Missense_Mutation p.G889D 0.13 deleterious(0.02) probably_damaging(0.971) TCGA-D8-A1XL-01 8 121290407 121290407 A - COL14A1 Frame_Shift_Del p.T1092Pfs*50 0.13 TCGA-D8-A1XL-01 8 131955636 131955636 C G ADCY8 Missense_Mutation p.M438I 0.09 tolerated(0.21) possibly_damaging(0.778) TCGA-D8-A1XL-01 8 139163647 139163647 C A FAM135B Missense_Mutation p.S1024I 0.08 deleterious(0) possibly_damaging(0.646) TCGA-D8-A1XL-01 8 142161849 142161849 C T DENND3 Silent p.I249I 0.14 TCGA-D8-A1XL-01 9 116053913 116053913 G C PRPF4 Missense_Mutation p.R514S 0.26 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XL-01 9 18829873 18829873 A T ADAMTSL1 Missense_Mutation p.I1383F 0.11 tolerated(0.74) benign(0.001) TCGA-D8-A1XL-01 9 35558279 35558279 A G RUSC2 Missense_Mutation p.E1049G 0.14 tolerated(0.37) benign(0.083) TCGA-D8-A1XL-01 9 91993930 91993930 G T SEMA4D Missense_Mutation p.L760M 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1XL-01 X 114242525 114242525 T C IL13RA2 Missense_Mutation p.S323G 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A1XL-01 X 118724267 118724267 C T NKRF Missense_Mutation p.R389H 0.22 tolerated(0.14) possibly_damaging(0.838) TCGA-D8-A1XL-01 X 131762777 131762777 A C HS6ST2 Missense_Mutation p.F471C 0.28 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XL-01 X 16711263 16711263 C G CTPS2 Splice_Site p.X213_splice 0.25 TCGA-D8-A1XL-01 X 21900777 21900777 T C MBTPS2 3'UTR 0.21 TCGA-D8-A1XL-01 X 3228241 3228241 C T MXRA5 Missense_Mutation p.R2668H 0.15 tolerated(0.36) benign(0.059) TCGA-D8-A1XL-01 X 80371790 80371790 G T HMGN5 Silent p.A60A 0.06 TCGA-D8-A1XM-01 10 103986245 103986245 C T ELOVL3 5'UTR 0.30 TCGA-D8-A1XM-01 10 121663612 121663612 G C SEC23IP Missense_Mutation p.E308D 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-D8-A1XM-01 10 124593252 124593252 C T CUZD1 Nonsense_Mutation p.W529* 0.23 TCGA-D8-A1XM-01 10 87379751 87379751 C T GRID1 Missense_Mutation p.V745M 0.28 deleterious(0) probably_damaging(0.953) TCGA-D8-A1XM-01 10 97917739 97917746 TCAGCAAC - ZNF518A RNA 0.21 TCGA-D8-A1XM-01 11 121393316 121393316 C T SORL1 Missense_Mutation p.H476Y 0.25 deleterious(0) probably_damaging(0.939) TCGA-D8-A1XM-01 11 33763554 33763554 G C FBXO3 Nonsense_Mutation p.S439* 0.19 TCGA-D8-A1XM-01 11 46568822 46568822 C T AMBRA1 Silent p.V73V 0.27 TCGA-D8-A1XM-01 11 55322666 55322666 C A OR4C15 Missense_Mutation p.S295Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-D8-A1XM-01 11 9608368 9608368 G T WEE1 Missense_Mutation p.L584F 0.14 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XM-01 12 52844244 52844244 C T KRT6B Missense_Mutation p.R234H 0.20 deleterious(0.05) benign(0.127) TCGA-D8-A1XM-01 12 55039438 55039438 A T DCD Missense_Mutation p.L51I 0.29 tolerated_low_confidence(0.3) possibly_damaging(0.567) TCGA-D8-A1XM-01 13 47409635 47409635 C A HTR2A Silent p.V251V 0.26 TCGA-D8-A1XM-01 15 65496643 65496643 C T CILP Silent p.L294L 0.23 TCGA-D8-A1XM-01 15 74468296 74468296 G A ISLR Missense_Mutation p.G366E 0.19 deleterious(0.01) benign(0.36) TCGA-D8-A1XM-01 16 18839447 18839447 G T SMG1 Nonsense_Mutation p.S3216* 0.24 TCGA-D8-A1XM-01 16 57710130 57710130 G A GPR97 Silent p.E75E 0.12 TCGA-D8-A1XM-01 16 71967361 71967361 C T RP11-498D10.6 3'Flank 0.15 TCGA-D8-A1XM-01 17 1374587 1374587 G A MYO1C Missense_Mutation p.R689W 0.58 deleterious(0.01) probably_damaging(0.981) TCGA-D8-A1XM-01 17 33875444 33875444 C T SLFN14 Silent p.P851P 0.32 TCGA-D8-A1XM-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.34 deleterious(0) probably_damaging(1) TCGA-D8-A1XM-01 17 48541257 48541257 G A ACSF2 Silent p.S375S 0.47 TCGA-D8-A1XM-01 17 49297759 49297761 AGA - MBTD1 In_Frame_Del p.F73del 0.48 TCGA-D8-A1XM-01 17 72366697 72366697 C T GPR142 Silent p.H132H 0.33 TCGA-D8-A1XM-01 17 7370012 7370012 C T ZBTB4 Missense_Mutation p.G37R 0.40 unknown(0) TCGA-D8-A1XM-01 19 22379699 22379699 C T ZNF676 5'UTR 0.35 TCGA-D8-A1XM-01 19 36832278 36832278 C T ZFP14 Missense_Mutation p.M150I 0.27 tolerated(0.38) benign(0) TCGA-D8-A1XM-01 19 54418757 54418757 C T CACNG7 Missense_Mutation p.S141L 0.28 deleterious(0) probably_damaging(0.951) TCGA-D8-A1XM-01 1 103461544 103461544 C T COL11A1 Splice_Site p.X765_splice 0.49 TCGA-D8-A1XM-01 1 117146529 117146529 G A IGSF3 Silent p.I467I 0.29 TCGA-D8-A1XM-01 1 117311125 117311125 A C CD2 Missense_Mutation p.E259A 0.36 tolerated(0.06) possibly_damaging(0.577) TCGA-D8-A1XM-01 1 166135414 166135414 G A FAM78B Silent p.C24C 0.28 TCGA-D8-A1XM-01 1 46751244 46751244 C T LRRC41 Missense_Mutation p.E429K 0.13 tolerated(0.51) possibly_damaging(0.486) TCGA-D8-A1XM-01 1 62970400 62970400 G C DOCK7 Silent p.L1524L 0.22 TCGA-D8-A1XM-01 1 897038 897038 G A KLHL17 Missense_Mutation p.V133M 0.25 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XM-01 22 41545883 41545883 C T EP300 Missense_Mutation p.S833L 0.37 unknown(0) TCGA-D8-A1XM-01 2 118582184 118582184 G A DDX18 Missense_Mutation p.R369Q 0.28 tolerated(0.51) benign(0.013) TCGA-D8-A1XM-01 2 162929936 162929936 C T DPP4 Missense_Mutation p.V23M 0.15 tolerated(0.16) possibly_damaging(0.701) TCGA-D8-A1XM-01 2 74763222 74763222 G A LOXL3 Silent p.L383L 0.30 TCGA-D8-A1XM-01 2 99204011 99204011 G A INPP4A Silent p.L958L 0.25 TCGA-D8-A1XM-01 3 10400565 10400565 C T ATP2B2 Missense_Mutation p.R649Q 0.36 tolerated(0.15) probably_damaging(0.997) TCGA-D8-A1XM-01 3 14197851 14197851 C T XPC Missense_Mutation p.E673K 0.25 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XM-01 3 151075105 151075105 C A MED12L Silent p.L887L 0.26 TCGA-D8-A1XM-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.27 deleterious(0.04) probably_damaging(0.96) TCGA-D8-A1XM-01 3 49759232 49759232 G C GMPPB Missense_Mutation p.H373D 0.29 deleterious(0) probably_damaging(0.969) TCGA-D8-A1XM-01 3 51458364 51458364 T C VPRBP Missense_Mutation p.N258S 0.20 deleterious(0.01) probably_damaging(0.968) TCGA-D8-A1XM-01 3 89391241 89391241 G C EPHA3 Splice_Site p.X436_splice 0.23 TCGA-D8-A1XM-01 4 100266397 100266397 G T ADH1C Missense_Mutation p.P96T 0.21 probably_damaging(0.943) TCGA-D8-A1XM-01 5 102888118 102888118 C T NUDT12 Splice_Site p.X360_splice 0.27 TCGA-D8-A1XM-01 5 77524009 77524009 G A AP3B1 Missense_Mutation p.L112F 0.23 deleterious(0.01) possibly_damaging(0.74) TCGA-D8-A1XM-01 6 110778105 110778105 T G SLC22A16 Missense_Mutation p.N57H 0.42 deleterious(0) possibly_damaging(0.738) TCGA-D8-A1XM-01 6 131912640 131912640 G A MED23 Nonsense_Mutation p.R1167* 0.39 TCGA-D8-A1XM-01 6 160232782 160232782 C T PNLDC1 Silent p.L290L 0.57 TCGA-D8-A1XM-01 6 168352584 168352584 G A MLLT4 Missense_Mutation p.S1510N 0.57 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1XM-01 6 56437729 56437729 C T DST Missense_Mutation p.R1834Q 0.23 probably_damaging(0.969) TCGA-D8-A1XM-01 7 14880851 14880851 G A DGKB Missense_Mutation p.S13L 0.34 tolerated(0.22) benign(0.03) TCGA-D8-A1XM-01 7 62758740 62758740 C T ZNF733P RNA 0.17 TCGA-D8-A1XM-01 9 139229013 139229013 G A GPSM1 Missense_Mutation p.E60K 0.25 deleterious(0) possibly_damaging(0.678) TCGA-D8-A1XM-01 9 84532651 84532651 T A SPATA31D5P RNA 0.31 TCGA-D8-A1XM-01 X 129629609 129629609 C G RP1-274L7.1 Intron 0.29 TCGA-D8-A1XM-01 X 154182270 154182270 C T F8 Silent p.E600E 0.28 TCGA-D8-A1XM-01 X 3238221 3238221 C A MXRA5 Missense_Mutation p.K1835N 0.28 tolerated(0.12) possibly_damaging(0.472) TCGA-D8-A1XM-01 X 5811184 5811184 T A NLGN4X Missense_Mutation p.R709W 0.31 deleterious(0) possibly_damaging(0.635) TCGA-D8-A1XM-01 X 70462884 70462884 G A ZMYM3 Silent p.Y1161Y 0.19 TCGA-D8-A1XM-01 X 71494957 71494957 G C RPS4X Missense_Mutation p.I102M 0.27 tolerated(0.14) benign(0.203) TCGA-D8-A1XM-01 X 96185793 96185793 T A DIAPH2 Missense_Mutation p.I347K 0.32 deleterious(0) unknown(0) TCGA-D8-A1XO-01 10 78943191 78943191 T A KCNMA1 Nonsense_Mutation p.R266* 0.28 TCGA-D8-A1XO-01 11 108121488 108121488 G T ATM Silent p.L432L 0.30 TCGA-D8-A1XO-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.60 TCGA-D8-A1XO-01 16 72832413 72832413 G A ZFHX3 Nonsense_Mutation p.Q1390* 0.55 TCGA-D8-A1XO-01 17 7531048 7531048 G A SAT2 5'UTR 0.55 TCGA-D8-A1XO-01 17 80046098 80046098 G A FASN Silent p.S893S 0.21 TCGA-D8-A1XO-01 19 18650372 18650372 C A FKBP8 Missense_Mutation p.D151Y 0.35 deleterious(0) probably_damaging(0.982) TCGA-D8-A1XO-01 19 36321761 36321761 G A NPHS1 Silent p.Y1193Y 0.18 TCGA-D8-A1XO-01 19 8959522 8959522 C T MUC16 3'UTR 0.17 TCGA-D8-A1XO-01 1 143912407 143912407 C G FAM72D 5'UTR 0.13 TCGA-D8-A1XO-01 1 150551359 150551359 A T MCL1 Silent p.V216V 0.25 TCGA-D8-A1XO-01 1 63920077 63920077 C G ITGB3BP Missense_Mutation p.R173T 0.23 tolerated(0.45) benign(0.156) TCGA-D8-A1XO-01 22 30775744 30775744 A T RNF215 Missense_Mutation p.L356Q 0.44 deleterious(0) probably_damaging(1) TCGA-D8-A1XO-01 2 44429052 44429052 C T PPM1B Silent p.I238I 0.25 TCGA-D8-A1XO-01 2 68352441 68352441 C T WDR92 3'Flank 0.24 TCGA-D8-A1XO-01 2 74666934 74666934 G A RTKN Intron 0.33 TCGA-D8-A1XO-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.36 deleterious(0.04) probably_damaging(0.96) TCGA-D8-A1XO-01 3 87017994 87017994 C T VGLL3 Missense_Mutation p.R228Q 0.11 tolerated(0.42) benign(0.117) TCGA-D8-A1XO-01 5 139851971 139851971 A C ANKHD1 Intron 0.35 TCGA-D8-A1XO-01 5 150924228 150924228 G A FAT2 Nonsense_Mutation p.Q2154* 0.33 TCGA-D8-A1XO-01 6 105609402 105609402 G A POPDC3 Missense_Mutation p.T128M 0.40 deleterious(0.03) benign(0.011) TCGA-D8-A1XO-01 6 10626893 10626893 C T GCNT2 3'UTR 0.34 TCGA-D8-A1XO-01 6 145172203 145172203 G T UTRN 3'UTR 0.29 TCGA-D8-A1XO-01 7 104719345 104719345 G T KMT2E Missense_Mutation p.V395F 0.32 deleterious(0) possibly_damaging(0.727) TCGA-D8-A1XO-01 7 23792363 23792363 A G STK31 Missense_Mutation p.T349A 0.30 tolerated(0.89) benign(0.008) TCGA-D8-A1XO-01 9 138387255 138387255 G C C9orf116 3'UTR 0.37 TCGA-D8-A1XO-01 X 101096721 101096721 G A NXF5 Silent p.F55F 0.25 TCGA-D8-A1XO-01 X 24580157 24580157 A G PCYT1B 3'UTR 0.16 TCGA-D8-A1XO-01 X 66765081 66765081 C T AR Silent p.R31R 0.26 TCGA-D8-A1XQ-01 10 103904781 103904781 G A PPRC1 Missense_Mutation p.V1205I 0.22 tolerated_low_confidence(0.22) benign(0.124) TCGA-D8-A1XQ-01 10 106136572 106136572 T C CCDC147 Missense_Mutation p.V365A 0.21 deleterious(0.02) benign(0.014) TCGA-D8-A1XQ-01 10 118386474 118386474 G T PNLIPRP2 Missense_Mutation p.G144W 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 10 11963302 11963302 G A UPF2 Missense_Mutation p.R1272C 0.19 deleterious_low_confidence(0) benign(0.136) TCGA-D8-A1XQ-01 10 12143133 12143133 T C DHTKD1 Missense_Mutation p.Y617H 0.15 tolerated(0.43) benign(0.012) TCGA-D8-A1XQ-01 10 125771940 125771940 A G CHST15 Silent p.F468F 0.07 TCGA-D8-A1XQ-01 10 127461252 127461252 T C MMP21 Silent p.L255L 0.12 TCGA-D8-A1XQ-01 10 129903631 129903631 T G MKI67 Missense_Mutation p.N2158T 0.14 tolerated(0.49) benign(0.034) TCGA-D8-A1XQ-01 10 129913443 129913443 T C MKI67 Missense_Mutation p.D410G 0.11 tolerated(0.06) benign(0.014) TCGA-D8-A1XQ-01 10 23235096 23235097 - A ARMC3 Frame_Shift_Ins p.A27Sfs*9 0.14 TCGA-D8-A1XQ-01 10 27382293 27382293 A G ANKRD26 Silent p.I172I 0.19 TCGA-D8-A1XQ-01 10 27702992 27702992 T A PTCHD3 Missense_Mutation p.E63V 0.29 tolerated_low_confidence(0.28) possibly_damaging(0.607) TCGA-D8-A1XQ-01 10 29759278 29759278 G T SVIL Missense_Mutation p.L1924M 0.18 deleterious(0) probably_damaging(0.966) TCGA-D8-A1XQ-01 10 3124643 3124643 T A PFKP Missense_Mutation p.F59Y 0.11 tolerated(0.07) benign(0.116) TCGA-D8-A1XQ-01 10 46121714 46121714 A C ZFAND4 Silent p.S519S 0.16 TCGA-D8-A1XQ-01 10 49392635 49392635 A T FRMPD2 Missense_Mutation p.I853K 0.31 deleterious(0) possibly_damaging(0.886) TCGA-D8-A1XQ-01 10 50025367 50025367 C A WDFY4 Missense_Mutation p.H1806Q 0.15 deleterious(0.01) benign(0.027) TCGA-D8-A1XQ-01 10 50708659 50708659 C T ERCC6 Missense_Mutation p.G537D 0.15 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 10 50952735 50952735 T C OGDHL Missense_Mutation p.I565V 0.19 tolerated(0.73) benign(0.008) TCGA-D8-A1XQ-01 10 51580603 51580603 T C NCOA4 Silent p.L79L 0.06 TCGA-D8-A1XQ-01 10 55566505 55566505 T C PCDH15 Missense_Mutation p.K1627R 0.45 tolerated_low_confidence(0.34) benign(0) TCGA-D8-A1XQ-01 10 6061845 6061845 C A IL2RA Missense_Mutation p.V215F 0.23 tolerated(1) benign(0.002) TCGA-D8-A1XQ-01 10 61832799 61832799 G A ANK3 Missense_Mutation p.R2614C 0.25 benign(0.165) TCGA-D8-A1XQ-01 10 64415342 64415342 T C ZNF365 Intron 0.19 TCGA-D8-A1XQ-01 10 68686312 68686312 C A LRRTM3 5'UTR 0.37 TCGA-D8-A1XQ-01 10 72061216 72061216 T A LRRC20 Missense_Mutation p.N150I 0.16 deleterious(0) possibly_damaging(0.904) TCGA-D8-A1XQ-01 10 74666365 74666365 T C OIT3 Missense_Mutation p.C186R 0.19 deleterious(0) probably_damaging(0.944) TCGA-D8-A1XQ-01 10 75532215 75532215 T G AC022400.2 Missense_Mutation p.H55P 0.10 unknown(0) TCGA-D8-A1XQ-01 10 91162854 91162854 A - IFIT1 Frame_Shift_Del p.K276Rfs*16 0.13 TCGA-D8-A1XQ-01 10 95276744 95276744 A - CEP55 Frame_Shift_Del p.D247Ifs*9 0.22 TCGA-D8-A1XQ-01 10 95557083 95557083 A T LGI1 Missense_Mutation p.L399F 0.20 deleterious(0) probably_damaging(0.956) TCGA-D8-A1XQ-01 10 96352051 96352051 A - HELLS Frame_Shift_Del p.R614Efs*11 0.28 TCGA-D8-A1XQ-01 10 97916940 97916940 A C ZNF518A RNA 0.07 TCGA-D8-A1XQ-01 10 98411020 98411020 C G PIK3AP1 Missense_Mutation p.E325Q 0.05 tolerated(0.13) possibly_damaging(0.826) TCGA-D8-A1XQ-01 11 101324385 101324385 G A TRPC6 Silent p.N880N 0.11 TCGA-D8-A1XQ-01 11 105481555 105481555 A G GRIA4 Intron 0.26 TCGA-D8-A1XQ-01 11 107393043 107393043 G A ALKBH8 Silent p.I423I 0.08 TCGA-D8-A1XQ-01 11 108043147 108043147 G A NPAT Missense_Mutation p.A855V 0.07 deleterious(0.04) possibly_damaging(0.731) TCGA-D8-A1XQ-01 11 108062883 108062883 A C NPAT Silent p.S84S 0.21 TCGA-D8-A1XQ-01 11 108204662 108204662 A G ATM Silent p.L2659L 0.11 TCGA-D8-A1XQ-01 11 108253745 108253745 A T C11orf65 3'UTR 0.21 TCGA-D8-A1XQ-01 11 108381462 108381462 A G EXPH5 Missense_Mutation p.V1591A 0.06 tolerated(0.1) benign(0.014) TCGA-D8-A1XQ-01 11 108382318 108382318 A G EXPH5 Missense_Mutation p.S1306P 0.10 tolerated(0.23) benign(0.019) TCGA-D8-A1XQ-01 11 111956054 111956054 G A TIMM8B Missense_Mutation p.R88W 0.10 deleterious(0.02) benign(0.067) TCGA-D8-A1XQ-01 11 113845976 113845976 G A HTR3A 5'UTR 0.12 TCGA-D8-A1XQ-01 11 115047314 115047314 T G CADM1 Splice_Site p.X404_splice 0.04 TCGA-D8-A1XQ-01 11 116703521 116703521 G A APOC3 Nonsense_Mutation p.W74* 0.05 TCGA-D8-A1XQ-01 11 116827664 116827664 C T SIK3 Silent p.Q72Q 0.17 TCGA-D8-A1XQ-01 11 117060973 117060973 C T SIDT2 Missense_Mutation p.R529W 0.17 deleterious(0) probably_damaging(0.959) TCGA-D8-A1XQ-01 11 117306398 117306398 C T DSCAML1 Missense_Mutation p.R1673H 0.06 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XQ-01 11 117711035 117711035 A G FXYD6-FXYD2 Missense_Mutation p.M74T 0.10 tolerated(0.37) benign(0.002) TCGA-D8-A1XQ-01 11 118038832 118038840 TGGCCACGG - SCN2B In_Frame_Del p.R137_H139del 0.16 TCGA-D8-A1XQ-01 11 118272347 118272347 C T RP11-770J1.5 Silent p.P12P 0.11 TCGA-D8-A1XQ-01 11 119050981 119050981 C T NLRX1 Missense_Mutation p.R751C 0.25 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 11 122848486 122848486 A G BSX Silent p.G191G 0.10 TCGA-D8-A1XQ-01 11 124120545 124120545 C T OR8G1 Silent p.G41G 0.32 TCGA-D8-A1XQ-01 11 124748247 124748247 C G ROBO3 Missense_Mutation p.L1079V 0.73 tolerated(0.09) probably_damaging(0.996) TCGA-D8-A1XQ-01 11 1268667 1268667 C T MUC5B Silent p.T3519T 0.24 TCGA-D8-A1XQ-01 11 134073079 134073079 C T NCAPD3 Missense_Mutation p.V495I 0.09 tolerated(0.4) benign(0.001) TCGA-D8-A1XQ-01 11 18472667 18472667 T G LDHC Missense_Mutation p.I331R 0.10 tolerated(0.29) benign(0.03) TCGA-D8-A1XQ-01 11 22646476 22646477 - A FANCF Frame_Shift_Ins p.W294Lfs*5 0.12 TCGA-D8-A1XQ-01 11 2320797 2320797 A T C11orf21 Silent p.P142P 0.19 TCGA-D8-A1XQ-01 11 25100217 25100217 T C LUZP2 3'UTR 0.16 TCGA-D8-A1XQ-01 11 2920736 2920736 G C SLC22A18AS Missense_Mutation p.R66G 0.21 tolerated_low_confidence(0.09) benign(0) TCGA-D8-A1XQ-01 11 3062149 3062149 G A CARS Silent p.D144D 0.15 TCGA-D8-A1XQ-01 11 3661293 3661293 C T ART5 Silent p.E122E 0.13 TCGA-D8-A1XQ-01 11 4141180 4141180 T C RRM1 Intron 0.13 TCGA-D8-A1XQ-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.23 TCGA-D8-A1XQ-01 11 47236658 47236658 A T DDB2 5'UTR 0.32 TCGA-D8-A1XQ-01 11 47345226 47345226 G A MADD Missense_Mutation p.C1461Y 0.11 tolerated(0.07) possibly_damaging(0.904) TCGA-D8-A1XQ-01 11 47800714 47800714 G A NUP160 Silent p.D1418D 0.13 TCGA-D8-A1XQ-01 11 47819397 47819397 G T NUP160 Missense_Mutation p.L1075I 0.16 tolerated(0.05) possibly_damaging(0.477) TCGA-D8-A1XQ-01 11 48238525 48238527 CTC TT OR4B1 Frame_Shift_Del p.S55Ffs*27 0.19 TCGA-D8-A1XQ-01 11 56000229 56000229 T C OR5T2 Missense_Mutation p.S145G 0.08 tolerated(0.14) benign(0.028) TCGA-D8-A1XQ-01 11 56468298 56468298 A G OR9G1 Silent p.A145A 0.04 TCGA-D8-A1XQ-01 11 57081178 57081178 A C TNKS1BP1 Silent p.A328A 0.15 TCGA-D8-A1XQ-01 11 57252590 57252590 G A SLC43A1 Silent p.S553S 0.14 TCGA-D8-A1XQ-01 11 58207497 58207497 A T OR5B12 Missense_Mutation p.M43K 0.15 deleterious_low_confidence(0) benign(0.146) TCGA-D8-A1XQ-01 11 58919903 58919903 G A FAM111A Silent p.Q254Q 0.17 TCGA-D8-A1XQ-01 11 59863091 59863091 G T MS4A2 Nonsense_Mutation p.E233* 0.11 TCGA-D8-A1XQ-01 11 61630806 61630806 A G FADS2 Missense_Mutation p.M345V 0.17 deleterious(0) possibly_damaging(0.542) TCGA-D8-A1XQ-01 11 62338493 62338493 G A EEF1G Nonsense_Mutation p.R156* 0.08 TCGA-D8-A1XQ-01 11 62371499 62371499 C G EML3 Missense_Mutation p.A696P 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 11 63533610 63533610 C T C11orf95 RNA 0.11 TCGA-D8-A1XQ-01 11 64084564 64084564 T C TRMT112 Missense_Mutation p.E79G 0.15 tolerated(0.06) benign(0.078) TCGA-D8-A1XQ-01 11 64428483 64428483 G T NRXN2 Missense_Mutation p.P643T 0.30 tolerated(0.89) benign(0.003) TCGA-D8-A1XQ-01 11 64527299 64527299 G A PYGM Silent p.N24N 0.09 TCGA-D8-A1XQ-01 11 64677214 64677214 A G ATG2A Silent p.L682L 0.21 TCGA-D8-A1XQ-01 11 64813977 64813977 A G NAALADL1 Missense_Mutation p.Y541H 0.12 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 11 65826406 65826406 C T SF3B2 Missense_Mutation p.R358C 0.23 deleterious(0.02) benign(0.424) TCGA-D8-A1XQ-01 11 66001353 66001353 C A PACS1 Missense_Mutation p.L646M 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 11 66031617 66031617 G A KLC2 Missense_Mutation p.R348Q 0.16 tolerated(1) benign(0.011) TCGA-D8-A1XQ-01 11 66136062 66136062 C T SLC29A2 Missense_Mutation p.G166S 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 11 6637976 6637976 G A TPP1 Missense_Mutation p.R268W 0.28 deleterious(0.02) benign(0.001) TCGA-D8-A1XQ-01 11 66407468 66407468 G A RBM4 Missense_Mutation p.A96T 0.10 tolerated(0.09) benign(0.02) TCGA-D8-A1XQ-01 11 66458881 66458881 G A SPTBN2 Silent p.A1813A 0.30 TCGA-D8-A1XQ-01 11 66638267 66638267 G A PC Missense_Mutation p.H244Y 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 11 67274874 67274874 T C CDK2AP2 Missense_Mutation p.Y92C 0.09 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 11 67925721 67925723 TCT - SUV420H1 In_Frame_Del p.K697del 0.11 TCGA-D8-A1XQ-01 11 70858241 70858241 C T SHANK2 Silent p.P44P 0.07 TCGA-D8-A1XQ-01 11 71946489 71946489 C T INPPL1 Missense_Mutation p.L885F 0.18 deleterious(0.02) possibly_damaging(0.893) TCGA-D8-A1XQ-01 11 73809238 73809238 T C C2CD3 Missense_Mutation p.Y932C 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-D8-A1XQ-01 11 73829363 73829364 - T C2CD3 Frame_Shift_Ins p.I477Nfs*12 0.14 TCGA-D8-A1XQ-01 11 74554230 74554230 C - XRRA1 3'UTR 0.21 TCGA-D8-A1XQ-01 11 82895807 82895807 A T PCF11 Missense_Mutation p.E1513D 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-D8-A1XQ-01 11 83172914 83172914 T C DLG2 Intron 0.20 TCGA-D8-A1XQ-01 11 86086081 86086081 T G CCDC81 5'UTR 0.35 TCGA-D8-A1XQ-01 11 86665908 86665908 C A FZD4 Missense_Mutation p.D74Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XQ-01 11 89944425 89944425 C T CHORDC1 Missense_Mutation p.D131N 0.24 deleterious(0.02) benign(0.187) TCGA-D8-A1XQ-01 11 92086398 92086398 A G FAT3 Missense_Mutation p.I374V 0.11 benign(0) TCGA-D8-A1XQ-01 11 92573800 92573800 C G FAT3 Missense_Mutation p.P3481A 0.19 probably_damaging(1) TCGA-D8-A1XQ-01 11 94759082 94759082 C T KDM4E Nonsense_Mutation p.R121* 0.10 TCGA-D8-A1XQ-01 11 95504688 95504688 T C FAM76B 3'UTR 0.07 TCGA-D8-A1XQ-01 11 95825224 95825224 T C MAML2 Silent p.Q657Q 0.09 TCGA-D8-A1XQ-01 11 9878002 9878002 T C SBF2 Intron 0.25 TCGA-D8-A1XQ-01 12 101437324 101437324 G - ANO4 Frame_Shift_Del p.V353Sfs*20 0.15 TCGA-D8-A1XQ-01 12 101488041 101488041 A - ANO4 Frame_Shift_Del p.V537Lfs*5 0.11 TCGA-D8-A1XQ-01 12 101777421 101777421 A G UTP20 Missense_Mutation p.E2677G 0.12 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 12 105512306 105512306 A C KIAA1033 Missense_Mutation p.K173T 0.17 deleterious(0.03) benign(0.353) TCGA-D8-A1XQ-01 12 108918177 108918177 T C SART3 Missense_Mutation p.N877S 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1XQ-01 12 109959091 109959091 A T UBE3B Missense_Mutation p.I739F 0.18 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 12 110989696 110989696 A G PPTC7 Missense_Mutation p.C101R 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 12 111064185 111064185 T C TCTN1 Silent p.C120C 0.21 TCGA-D8-A1XQ-01 12 111089114 111089114 A T HVCN1 Missense_Mutation p.L184H 0.13 deleterious(0) probably_damaging(0.989) TCGA-D8-A1XQ-01 12 111291345 111291345 A T CCDC63 Missense_Mutation p.K49M 0.09 deleterious(0.02) benign(0.253) TCGA-D8-A1XQ-01 12 111923661 111923661 A C ATXN2 Silent p.P931P 0.19 TCGA-D8-A1XQ-01 12 113307473 113307473 G T RPH3A Intron 0.16 TCGA-D8-A1XQ-01 12 120575091 120575091 A G GCN1L1 Silent p.I2232I 0.05 TCGA-D8-A1XQ-01 12 121439050 121439050 A G HNF1A 3'UTR 0.21 TCGA-D8-A1XQ-01 12 121654940 121654940 G T P2RX4 Missense_Mutation p.W62C 0.18 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 12 121785621 121785621 T C ANAPC5 Missense_Mutation p.N91D 0.24 tolerated(0.57) benign(0.021) TCGA-D8-A1XQ-01 12 122017957 122017957 T - KDM2B Intron 0.15 TCGA-D8-A1XQ-01 12 123187533 123187533 A - HCAR2 Frame_Shift_Del p.C100Afs*3 0.17 TCGA-D8-A1XQ-01 12 123703048 123703048 T A MPHOSPH9 Splice_Site p.X139_splice 0.13 TCGA-D8-A1XQ-01 12 124428025 124428025 C T CCDC92 Missense_Mutation p.S17N 0.22 deleterious(0.01) benign(0.133) TCGA-D8-A1XQ-01 12 12483263 12483263 T C MANSC1 Missense_Mutation p.T332A 0.34 tolerated(0.62) benign(0.001) TCGA-D8-A1XQ-01 12 132546701 132546701 C T EP400 Missense_Mutation p.P2644L 0.19 possibly_damaging(0.859) TCGA-D8-A1XQ-01 12 133196850 133196850 C T P2RX2 Intron 0.40 TCGA-D8-A1XQ-01 12 133201511 133201511 C T POLE Missense_Mutation p.A2243T 0.18 tolerated(0.59) benign(0) TCGA-D8-A1XQ-01 12 133291511 133291511 T G PGAM5 Missense_Mutation p.S87A 0.14 tolerated(0.32) benign(0.002) TCGA-D8-A1XQ-01 12 133733491 133733491 G A ZNF10 Silent p.A553A 0.19 TCGA-D8-A1XQ-01 12 13717034 13717034 G A GRIN2B Silent p.S1046S 0.22 TCGA-D8-A1XQ-01 12 25031486 25031486 C T BCAT1 Missense_Mutation p.R175H 0.12 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 12 26564309 26564309 A G ITPR2 Missense_Mutation p.M2448T 0.20 tolerated(0.42) benign(0.002) TCGA-D8-A1XQ-01 12 280295 280295 C G IQSEC3 Missense_Mutation p.L1028V 0.20 tolerated(0.3) benign(0.017) TCGA-D8-A1XQ-01 12 30787096 30787096 G A IPO8 Silent p.T940T 0.16 TCGA-D8-A1XQ-01 12 31585981 31585981 T - DENND5B Intron 0.33 TCGA-D8-A1XQ-01 12 31850719 31850719 T C AMN1 Silent p.G163G 0.18 TCGA-D8-A1XQ-01 12 40704388 40704388 C G LRRK2 Silent p.T1491T 0.40 TCGA-D8-A1XQ-01 12 46760683 46760683 A G SLC38A2 Missense_Mutation p.V176A 0.34 tolerated(0.22) probably_damaging(0.997) TCGA-D8-A1XQ-01 12 48174356 48174356 T C SLC48A1 3'UTR 0.20 TCGA-D8-A1XQ-01 12 49421616 49421616 G C KMT2D Missense_Mutation p.S4871R 0.17 unknown(0) TCGA-D8-A1XQ-01 12 49666773 49666773 A G TUBA1C Silent p.V371V 0.22 TCGA-D8-A1XQ-01 12 50045842 50045842 C G FMNL3 Missense_Mutation p.E493Q 0.19 tolerated(0.45) probably_damaging(0.986) TCGA-D8-A1XQ-01 12 52771901 52771901 C T KRT84 Missense_Mutation p.G574R 0.24 tolerated_low_confidence(0.08) unknown(0) TCGA-D8-A1XQ-01 12 53818998 53818998 C G AMHR2 Silent p.L158L 0.11 TCGA-D8-A1XQ-01 12 55615590 55615590 G A OR10A7 Missense_Mutation p.R261Q 0.28 tolerated(0.52) benign(0.171) TCGA-D8-A1XQ-01 12 55794567 55794567 A G OR6C65 Silent p.T85T 0.25 TCGA-D8-A1XQ-01 12 56817433 56817434 - TCC TIMELESS In_Frame_Ins p.E678dup 0.15 TCGA-D8-A1XQ-01 12 57437901 57437901 T C MYO1A Missense_Mutation p.R245G 0.13 tolerated(0.09) benign(0.005) TCGA-D8-A1XQ-01 12 57578941 57578941 G A LRP1 Missense_Mutation p.G2139D 0.25 probably_damaging(1) TCGA-D8-A1XQ-01 12 66308966 66308966 T C HMGA2 Intron 0.19 TCGA-D8-A1XQ-01 12 80733015 80733015 A T OTOGL Missense_Mutation p.N1665I 0.21 tolerated(0.05) benign(0.357) TCGA-D8-A1XQ-01 12 81777849 81777849 T C PPFIA2 Missense_Mutation p.I313V 0.16 tolerated(0.13) benign(0.025) TCGA-D8-A1XQ-01 12 9318694 9318694 G A PZP Nonsense_Mutation p.R738* 0.09 TCGA-D8-A1XQ-01 12 93226436 93226436 T C EEA1 Missense_Mutation p.E369G 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 12 96354383 96354383 C A AMDHD1 Missense_Mutation p.H265Q 0.12 tolerated(0.19) possibly_damaging(0.529) TCGA-D8-A1XQ-01 12 99120975 99120977 CTT - APAF1 In_Frame_Del p.L1162del 0.14 TCGA-D8-A1XQ-01 13 109707440 109707440 G A MYO16 Missense_Mutation p.R1010Q 0.08 deleterious(0.02) probably_damaging(0.985) TCGA-D8-A1XQ-01 13 109777639 109777639 G A MYO16 Missense_Mutation p.E1217K 0.10 tolerated(0.06) benign(0.013) TCGA-D8-A1XQ-01 13 110857876 110857876 C T COL4A1 Missense_Mutation p.G290R 0.07 unknown(0) TCGA-D8-A1XQ-01 13 111367765 111367765 C T ING1 5'UTR 0.08 TCGA-D8-A1XQ-01 13 114077063 114077063 C A ADPRHL1 3'UTR 0.58 TCGA-D8-A1XQ-01 13 114107558 114107558 G A ADPRHL1 Silent p.T65T 0.11 TCGA-D8-A1XQ-01 13 114107723 114107723 C T ADPRHL1 Silent p.L10L 0.30 TCGA-D8-A1XQ-01 13 114265367 114265367 T G TFDP1 Missense_Mutation p.S23R 0.10 tolerated(0.09) benign(0.365) TCGA-D8-A1XQ-01 13 114307194 114307194 C T ATP4B Missense_Mutation p.M183I 0.09 deleterious(0.03) possibly_damaging(0.527) TCGA-D8-A1XQ-01 13 23915510 23915510 C G SACS Missense_Mutation p.Q835H 0.19 probably_damaging(0.991) TCGA-D8-A1XQ-01 13 24443487 24443487 A T MIPEP Missense_Mutation p.V296E 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-D8-A1XQ-01 13 31797103 31797103 T C B3GALTL Silent p.S45S 0.16 TCGA-D8-A1XQ-01 13 35632987 35632987 G C NBEA Missense_Mutation p.G409A 0.11 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 13 35730247 35730248 - A NBEA Frame_Shift_Ins p.N854Kfs*18 0.11 TCGA-D8-A1XQ-01 13 39446912 39446912 C A FREM2 Silent p.R2673R 0.32 TCGA-D8-A1XQ-01 13 41507736 41507736 G C ELF1 Missense_Mutation p.T562R 0.10 deleterious(0.04) benign(0.241) TCGA-D8-A1XQ-01 13 41635808 41635808 T C WBP4 5'UTR 0.17 TCGA-D8-A1XQ-01 13 42277474 42277474 A C VWA8 Missense_Mutation p.L1064V 0.17 tolerated(0.15) benign(0.392) TCGA-D8-A1XQ-01 13 43986108 43986108 G A ENOX1 Missense_Mutation p.A51V 0.10 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XQ-01 13 45589722 45589722 G C GPALPP1 Missense_Mutation p.R232S 0.22 deleterious(0) possibly_damaging(0.551) TCGA-D8-A1XQ-01 13 48936996 48936996 G A RB1 Missense_Mutation p.R255Q 0.12 tolerated(0.06) benign(0.14) TCGA-D8-A1XQ-01 13 49089817 49089817 A - RCBTB2 Frame_Shift_Del p.S35Pfs*10 0.15 TCGA-D8-A1XQ-01 13 49760124 49760124 A - FNDC3A Frame_Shift_Del p.S549Vfs*6 0.16 TCGA-D8-A1XQ-01 13 49933960 49933960 T - CAB39L Frame_Shift_Del p.D96Mfs*2 0.17 TCGA-D8-A1XQ-01 13 51287274 51287274 C A DLEU7 3'UTR 0.12 TCGA-D8-A1XQ-01 13 52764065 52764065 A - MRPS31P5 RNA 0.29 TCGA-D8-A1XQ-01 13 53000065 53000065 A G VPS36 Splice_Site p.X258_splice 0.09 TCGA-D8-A1XQ-01 13 72063246 72063246 G - DACH1 Frame_Shift_Del p.D537Efs*8 0.09 TCGA-D8-A1XQ-01 13 77655723 77655723 G A MYCBP2 Nonsense_Mutation p.R3715* 0.18 TCGA-D8-A1XQ-01 13 77732165 77732165 C T MYCBP2 Missense_Mutation p.G2188E 0.07 probably_damaging(0.998) TCGA-D8-A1XQ-01 13 78202091 78202091 C A SCEL Missense_Mutation p.N546K 0.25 deleterious(0.03) benign(0.062) TCGA-D8-A1XQ-01 13 95275555 95275555 G A GPR180 Splice_Site p.X362_splice 0.12 TCGA-D8-A1XQ-01 13 99099062 99099062 C T FARP1 Missense_Mutation p.T1016M 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1XQ-01 13 99481978 99481978 G A DOCK9 Silent p.D1533D 0.10 TCGA-D8-A1XQ-01 13 99550452 99550452 G A DOCK9 Missense_Mutation p.P523S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1XQ-01 13 99947890 99947890 A T GPR183 Silent p.P170P 0.37 TCGA-D8-A1XQ-01 13 99947891 99947891 G A GPR183 Missense_Mutation p.P170L 0.36 deleterious(0.01) benign(0.076) TCGA-D8-A1XQ-01 14 100126741 100126741 C T HHIPL1 Silent p.S500S 0.07 TCGA-D8-A1XQ-01 14 100138717 100138717 C A HHIPL1 Silent p.I598I 0.17 TCGA-D8-A1XQ-01 14 102442138 102442138 T C DYNC1H1 Splice_Site p.X115_splice 0.15 TCGA-D8-A1XQ-01 14 103442062 103442062 T C CDC42BPB Missense_Mutation p.K489R 0.17 tolerated(0.29) benign(0.005) TCGA-D8-A1XQ-01 14 104145728 104145728 A G KLC1 Missense_Mutation p.D499G 0.14 deleterious(0.03) benign(0.2) TCGA-D8-A1XQ-01 14 105408008 105408008 C T AHNAK2 Missense_Mutation p.V4594M 0.11 benign(0.18) TCGA-D8-A1XQ-01 14 105834431 105834431 T C PACS2 Missense_Mutation p.Y203H 0.16 tolerated(0.55) possibly_damaging(0.857) TCGA-D8-A1XQ-01 14 106518647 106518647 C A IGHV3-7 Missense_Mutation p.G35V 0.13 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-D8-A1XQ-01 14 107049095 107049095 A - IGHV3-53 Frame_Shift_Del p.F9Sfs*6 0.12 TCGA-D8-A1XQ-01 14 20666270 20666270 T C OR11G2 Missense_Mutation p.V259A 0.28 deleterious(0) benign(0.232) TCGA-D8-A1XQ-01 14 20836967 20836967 C T TEP1 Missense_Mutation p.S2584N 0.13 tolerated(0.1) benign(0.279) TCGA-D8-A1XQ-01 14 20851438 20851438 G A TEP1 Silent p.H1314H 0.15 TCGA-D8-A1XQ-01 14 21109823 21109823 C A OR6S1 Missense_Mutation p.D10Y 0.17 deleterious(0.04) benign(0.106) TCGA-D8-A1XQ-01 14 21511522 21511522 A T RNASE7 Missense_Mutation p.K124M 0.15 tolerated(0.07) benign(0.089) TCGA-D8-A1XQ-01 14 23237317 23237317 C T OXA1L Nonsense_Mutation p.Q186* 0.18 TCGA-D8-A1XQ-01 14 24610102 24610102 G C EMC9 Missense_Mutation p.Q91E 0.33 tolerated(0.7) benign(0.14) TCGA-D8-A1XQ-01 14 24724342 24724342 G A TGM1 Missense_Mutation p.A588V 0.21 tolerated(0.19) benign(0.015) TCGA-D8-A1XQ-01 14 24799107 24799107 A G ADCY4 Silent p.D392D 0.12 TCGA-D8-A1XQ-01 14 24878012 24878012 G T NYNRIN Missense_Mutation p.V338L 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.497) TCGA-D8-A1XQ-01 14 30194831 30194831 C T PRKD1 Missense_Mutation p.R105H 0.09 deleterious(0.02) probably_damaging(0.953) TCGA-D8-A1XQ-01 14 35579138 35579138 C G PPP2R3C Splice_Site p.X98_splice 0.30 TCGA-D8-A1XQ-01 14 35742845 35742845 T C KIAA0391 3'UTR 0.21 TCGA-D8-A1XQ-01 14 39605751 39605751 C A GEMIN2 3'UTR 0.14 TCGA-D8-A1XQ-01 14 51226952 51226953 - T NIN Frame_Shift_Ins p.N674Kfs*2 0.10 TCGA-D8-A1XQ-01 14 62567180 62567180 C T SYT16 Missense_Mutation p.R565W 0.21 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XQ-01 14 67759250 67759250 A G MPP5 Silent p.S130S 0.21 TCGA-D8-A1XQ-01 14 68044077 68044077 C G PLEKHH1 Silent p.S840S 0.13 TCGA-D8-A1XQ-01 14 71206805 71206805 A T MAP3K9 Missense_Mutation p.S548R 0.10 deleterious(0) probably_damaging(0.988) TCGA-D8-A1XQ-01 14 75330485 75330485 A G PROX2 Missense_Mutation p.L18P 0.19 tolerated(0.24) benign(0.125) TCGA-D8-A1XQ-01 14 75516368 75516368 A G MLH3 5'UTR 0.38 TCGA-D8-A1XQ-01 14 78374253 78374253 C T ADCK1 Silent p.D283D 0.08 TCGA-D8-A1XQ-01 14 86089277 86089277 T C FLRT2 Silent p.G473G 0.14 TCGA-D8-A1XQ-01 14 93142953 93142953 T G RIN3 Splice_Site p.X823_splice 0.25 TCGA-D8-A1XQ-01 14 93199028 93199028 G A LGMN Missense_Mutation p.A35V 0.12 deleterious(0) probably_damaging(0.981) TCGA-D8-A1XQ-01 14 94139749 94139749 C G UNC79 Missense_Mutation p.A2092G 0.15 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XQ-01 14 94908912 94908912 A G SERPINA11 3'UTR 0.11 TCGA-D8-A1XQ-01 14 95053878 95053878 C - SERPINA5 Frame_Shift_Del p.S62Afs*9 0.29 TCGA-D8-A1XQ-01 14 95677094 95677094 C T CLMN Missense_Mutation p.R244Q 0.37 deleterious(0.05) benign(0.393) TCGA-D8-A1XQ-01 15 28326892 28326892 A G OCA2 Silent p.G43G 0.50 TCGA-D8-A1XQ-01 15 30653956 30653956 C A CHRFAM7A 3'UTR 0.17 TCGA-D8-A1XQ-01 15 31779758 31779758 G - OTUD7A Frame_Shift_Del p.L388* 0.26 TCGA-D8-A1XQ-01 15 34102731 34102731 T C RYR3 Missense_Mutation p.Y3360H 0.26 probably_damaging(0.987) TCGA-D8-A1XQ-01 15 34130695 34130695 G A RYR3 Missense_Mutation p.V4172M 0.17 benign(0.012) TCGA-D8-A1XQ-01 15 38643500 38643500 A G SPRED1 Missense_Mutation p.K324E 0.24 tolerated(0.12) possibly_damaging(0.83) TCGA-D8-A1XQ-01 15 40509800 40509800 A G BUB1B Missense_Mutation p.S928G 0.07 tolerated(0.17) benign(0.029) TCGA-D8-A1XQ-01 15 41384230 41384230 T C INO80 Missense_Mutation p.K178E 0.18 tolerated(0.52) benign(0.077) TCGA-D8-A1XQ-01 15 42185407 42185407 A G SPTBN5 Intron 0.27 TCGA-D8-A1XQ-01 15 43621138 43621138 C A LCMT2 Missense_Mutation p.G517V 0.23 tolerated(0.18) benign(0.017) TCGA-D8-A1XQ-01 15 44150962 44150962 C T WDR76 Silent p.A501A 0.11 TCGA-D8-A1XQ-01 15 45884475 45884475 G C BLOC1S6 Splice_Site p.X75_splice 0.15 TCGA-D8-A1XQ-01 15 48053941 48053941 C G SEMA6D Silent p.L177L 0.10 TCGA-D8-A1XQ-01 15 49076204 49076206 CTC - CEP152 In_Frame_Del p.E429del 0.15 TCGA-D8-A1XQ-01 15 55783388 55783388 T C DYX1C1 Missense_Mutation p.E113G 0.12 deleterious(0.04) benign(0.354) TCGA-D8-A1XQ-01 15 56121956 56121956 C G NEDD4 3'UTR 0.11 TCGA-D8-A1XQ-01 15 64039169 64039169 C T HERC1 Missense_Mutation p.R823Q 0.13 probably_damaging(0.997) TCGA-D8-A1XQ-01 15 65242118 65242118 G A ANKDD1A Missense_Mutation p.V470M 0.10 tolerated(0.13) benign(0.315) TCGA-D8-A1XQ-01 15 75143800 75143800 A C SCAMP2 Silent p.P122P 0.19 TCGA-D8-A1XQ-01 15 75503351 75503351 C T C15orf39 Missense_Mutation p.A1013V 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D8-A1XQ-01 15 78783000 78783000 C A IREB2 Missense_Mutation p.H741N 0.12 tolerated(0.09) benign(0.196) TCGA-D8-A1XQ-01 15 79310205 79310205 G A RASGRF1 Silent p.I550I 0.15 TCGA-D8-A1XQ-01 15 82574982 82574982 A G FAM154B Missense_Mutation p.Q259R 0.17 tolerated(0.24) benign(0.022) TCGA-D8-A1XQ-01 15 88476414 88476414 G A NTRK3 Missense_Mutation p.A573V 0.10 tolerated(0.17) benign(0.012) TCGA-D8-A1XQ-01 15 91298167 91298167 C T BLM Silent p.D362D 0.09 TCGA-D8-A1XQ-01 15 91420405 91420406 - C FURIN Frame_Shift_Ins p.Q183Pfs*9 0.21 TCGA-D8-A1XQ-01 15 91459377 91459377 G T MAN2A2 Missense_Mutation p.R962L 0.63 deleterious(0) possibly_damaging(0.708) TCGA-D8-A1XQ-01 16 15706434 15706434 C T KIAA0430 Missense_Mutation p.A1152T 0.10 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 16 15978039 15978039 T A FOPNL Nonsense_Mutation p.K18* 0.10 TCGA-D8-A1XQ-01 16 1621412 1621412 G T IFT140 Silent p.R550R 0.48 TCGA-D8-A1XQ-01 16 17232213 17232213 T C XYLT1 Missense_Mutation p.Q588R 0.14 deleterious(0.01) possibly_damaging(0.844) TCGA-D8-A1XQ-01 16 1798618 1798618 C T MAPK8IP3 Silent p.I370I 0.13 TCGA-D8-A1XQ-01 16 19547763 19547763 G A CCP110 Missense_Mutation p.E258K 0.32 deleterious(0) benign(0.306) TCGA-D8-A1XQ-01 16 19702748 19702748 G A C16orf62 Silent p.V956V 0.32 TCGA-D8-A1XQ-01 16 2160310 2160310 C T PKD1 Missense_Mutation p.A1620T 0.23 benign(0.305) TCGA-D8-A1XQ-01 16 2162806 2162806 G A PKD1 Silent p.A1048A 0.16 TCGA-D8-A1XQ-01 16 2223334 2223334 C T TRAF7 Missense_Mutation p.R316C 0.15 deleterious(0.01) benign(0.233) TCGA-D8-A1XQ-01 16 22326504 22326504 T G POLR3E Missense_Mutation p.V206G 0.09 deleterious(0) possibly_damaging(0.493) TCGA-D8-A1XQ-01 16 2546253 2546253 T C RP11-20I23.1 Missense_Mutation p.L35P 0.33 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XQ-01 16 2871599 2871599 C A PRSS21 Missense_Mutation p.P313Q 0.09 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1XQ-01 16 29907175 29907175 C A SEZ6L2 Missense_Mutation p.C173F 0.09 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 16 30593838 30593838 T C ZNF785 3'UTR 0.50 TCGA-D8-A1XQ-01 16 30936037 30936037 G A FBXL19 5'UTR 0.23 TCGA-D8-A1XQ-01 16 31191465 31191465 G A FUS 5'UTR 0.28 TCGA-D8-A1XQ-01 16 31383824 31383824 G A ITGAX Silent p.T762T 0.18 TCGA-D8-A1XQ-01 16 31388161 31388161 C T ITGAX Silent p.S850S 0.15 TCGA-D8-A1XQ-01 16 33020760 33020760 C G IGHV3OR16-8 Silent p.V56V 0.14 TCGA-D8-A1XQ-01 16 3781302 3781302 G A CREBBP Missense_Mutation p.T1688M 0.17 unknown(0) TCGA-D8-A1XQ-01 16 3820609 3820609 G T CREBBP Missense_Mutation p.Q948K 0.35 unknown(0) TCGA-D8-A1XQ-01 16 4016347 4016347 C T ADCY9 Missense_Mutation p.R1164H 0.12 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 16 4242567 4242567 C T SRL Missense_Mutation p.A337T 0.10 deleterious(0) possibly_damaging(0.902) TCGA-D8-A1XQ-01 16 55523666 55523666 C T MMP2 Silent p.D370D 0.24 TCGA-D8-A1XQ-01 16 55899995 55899995 G A CES5A Silent p.A224A 0.17 TCGA-D8-A1XQ-01 16 57181658 57181659 - T CPNE2 3'UTR 0.25 TCGA-D8-A1XQ-01 16 57760118 57760118 G A CCDC135 Missense_Mutation p.E633K 0.13 deleterious(0.03) possibly_damaging(0.884) TCGA-D8-A1XQ-01 16 58577341 58577341 A G CNOT1 Intron 0.17 TCGA-D8-A1XQ-01 16 58589155 58589155 C T CNOT1 Missense_Mutation p.R964K 0.27 tolerated(0.44) benign(0.023) TCGA-D8-A1XQ-01 16 633151 633151 T G PIGQ Silent p.A600A 0.12 TCGA-D8-A1XQ-01 16 65032588 65032588 C T CDH11 Missense_Mutation p.D134N 0.09 tolerated(0.62) benign(0.003) TCGA-D8-A1XQ-01 16 67859647 67859647 G C TSNAXIP1 Missense_Mutation p.E244Q 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1XQ-01 16 68716273 68716273 C T CDH3 Silent p.D355D 0.29 TCGA-D8-A1XQ-01 16 70589014 70589014 C T SF3B3 Missense_Mutation p.P539S 0.43 deleterious(0.02) possibly_damaging(0.764) TCGA-D8-A1XQ-01 16 711733 711733 G A WDR90 Silent p.Q1270Q 0.20 TCGA-D8-A1XQ-01 16 81056427 81056427 A G CENPN Intron 0.12 TCGA-D8-A1XQ-01 16 81056439 81056439 A G CENPN Intron 0.15 TCGA-D8-A1XQ-01 16 81187729 81187729 A G PKD1L2 RNA 0.23 TCGA-D8-A1XQ-01 16 84035989 84035991 CTT - NECAB2 3'UTR 0.33 TCGA-D8-A1XQ-01 16 84438843 84438843 T C ATP2C2 Missense_Mutation p.L107P 0.21 deleterious(0) probably_damaging(0.988) TCGA-D8-A1XQ-01 16 84797815 84797815 G A USP10 Missense_Mutation p.R593H 0.19 deleterious(0.03) possibly_damaging(0.841) TCGA-D8-A1XQ-01 16 89169066 89169066 G A ACSF3 Missense_Mutation p.V241M 0.13 deleterious(0.01) probably_damaging(0.947) TCGA-D8-A1XQ-01 17 1028679 1028679 A G ABR Missense_Mutation p.Y29H 0.12 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-D8-A1XQ-01 17 10351825 10351825 T A MYH4 Missense_Mutation p.D1515V 0.59 deleterious(0) probably_damaging(0.984) TCGA-D8-A1XQ-01 17 10543402 10543402 C T MYH3 Missense_Mutation p.A865T 0.14 tolerated(0.15) benign(0.001) TCGA-D8-A1XQ-01 17 11166756 11166756 A G SHISA6 Missense_Mutation p.I238V 0.18 tolerated(0.24) possibly_damaging(0.811) TCGA-D8-A1XQ-01 17 16705825 16705825 T C CCDC144A 3'UTR 0.11 TCGA-D8-A1XQ-01 17 18220114 18220114 G A SMCR8 Silent p.Q337Q 0.22 TCGA-D8-A1XQ-01 17 26731704 26731704 G A SLC46A1 Silent p.I337I 0.20 TCGA-D8-A1XQ-01 17 28539803 28539803 C T SLC6A4 Missense_Mutation p.A387T 0.42 deleterious(0) probably_damaging(0.967) TCGA-D8-A1XQ-01 17 28754560 28754560 A G CPD Silent p.S667S 0.19 TCGA-D8-A1XQ-01 17 29701152 29701152 T C NF1 Silent p.N2833N 0.20 TCGA-D8-A1XQ-01 17 2995389 2995389 C T OR1D2 Missense_Mutation p.G301E 0.21 tolerated(0.87) benign(0.185) TCGA-D8-A1XQ-01 17 2995437 2995437 T C OR1D2 Missense_Mutation p.N285S 0.16 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 17 3100901 3100901 T - OR1A2 Frame_Shift_Del p.L32Cfs*8 0.21 TCGA-D8-A1XQ-01 17 33738430 33738430 T C SLFN12 Missense_Mutation p.Y555C 0.06 tolerated_low_confidence(0.13) benign(0) TCGA-D8-A1XQ-01 17 36452996 36452996 G T MRPL45 5'UTR 0.47 TCGA-D8-A1XQ-01 17 36876922 36876922 C T MLLT6 Silent p.S788S 0.12 TCGA-D8-A1XQ-01 17 37988374 37988374 G A IKZF3 Missense_Mutation p.T13I 0.21 tolerated(0.1) benign(0.001) TCGA-D8-A1XQ-01 17 38122539 38122539 T C GSDMA Missense_Mutation p.F81L 0.18 tolerated(0.33) possibly_damaging(0.779) TCGA-D8-A1XQ-01 17 39914977 39914977 T A JUP Missense_Mutation p.Q548L 0.24 tolerated(0.17) benign(0.1) TCGA-D8-A1XQ-01 17 40458442 40458442 G A STAT5A Missense_Mutation p.V553M 0.25 tolerated(0.13) probably_damaging(0.953) TCGA-D8-A1XQ-01 17 40997704 40997704 C A AOC2 Missense_Mutation p.A354D 0.35 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 17 41031567 41031567 T C LINC00671 RNA 0.21 TCGA-D8-A1XQ-01 17 41168369 41168369 C T VAT1 Silent p.Q351Q 0.43 TCGA-D8-A1XQ-01 17 42429495 42429495 C T GRN Missense_Mutation p.A431V 0.25 deleterious(0.04) benign(0.078) TCGA-D8-A1XQ-01 17 43192564 43192564 G A PLCD3 Silent p.H536H 0.13 TCGA-D8-A1XQ-01 17 45569792 45569794 AAC - MRPL45P2 RNA 0.15 TCGA-D8-A1XQ-01 17 46148794 46148794 G A CBX1 3'UTR 0.15 TCGA-D8-A1XQ-01 17 46805391 46805391 T C HOXB13 Missense_Mutation p.N189D 0.13 tolerated(0.29) benign(0.034) TCGA-D8-A1XQ-01 17 47484202 47484202 G A PHB Silent p.F175F 0.17 TCGA-D8-A1XQ-01 17 49710906 49710906 T C CA10 Missense_Mutation p.T299A 0.13 tolerated(0.27) probably_damaging(0.996) TCGA-D8-A1XQ-01 17 54526454 54526454 G A ANKFN1 Missense_Mutation p.D375N 0.41 deleterious(0.03) benign(0.355) TCGA-D8-A1XQ-01 17 5463177 5463177 T A NLRP1 Missense_Mutation p.Q280L 0.28 deleterious(0) possibly_damaging(0.889) TCGA-D8-A1XQ-01 17 56353032 56353032 G A MPO Silent p.L412L 0.14 TCGA-D8-A1XQ-01 17 56492758 56492758 G T RNF43 Missense_Mutation p.L61M 0.32 deleterious_low_confidence(0.04) probably_damaging(0.984) TCGA-D8-A1XQ-01 17 56540485 56540485 G T HSF5 Nonsense_Mutation p.C400* 0.23 TCGA-D8-A1XQ-01 17 57076545 57076545 T - TRIM37 3'UTR 0.13 TCGA-D8-A1XQ-01 17 60484392 60484392 G A EFCAB3 Missense_Mutation p.C281Y 0.06 tolerated(0.45) benign(0.022) TCGA-D8-A1XQ-01 17 61497894 61497894 C - TANC2 Frame_Shift_Del p.P1519Lfs*33 0.12 TCGA-D8-A1XQ-01 17 61615558 61615558 T C KCNH6 Missense_Mutation p.L545P 0.11 deleterious(0) probably_damaging(0.954) TCGA-D8-A1XQ-01 17 61685293 61685293 G C TACO1 Missense_Mutation p.Q275H 0.46 tolerated(0.09) benign(0.14) TCGA-D8-A1XQ-01 17 61895616 61895616 G A DDX42 Missense_Mutation p.R892H 0.12 tolerated_low_confidence(0.07) benign(0.375) TCGA-D8-A1XQ-01 17 62532782 62532782 A C CEP95 Missense_Mutation p.R711S 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 17 62855609 62855609 A T LRRC37A3 Missense_Mutation p.I1552N 0.08 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XQ-01 17 62855849 62855849 T A LRRC37A3 Missense_Mutation p.Q1472L 0.11 deleterious(0.02) possibly_damaging(0.566) TCGA-D8-A1XQ-01 17 63156348 63156348 C T RGS9 Intron 0.22 TCGA-D8-A1XQ-01 17 64173049 64173049 A G CEP112 Missense_Mutation p.Y66H 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-D8-A1XQ-01 17 68172301 68172301 T C KCNJ2 Missense_Mutation p.F374S 0.07 deleterious(0.02) probably_damaging(1) TCGA-D8-A1XQ-01 17 73230808 73230810 GAC - NUP85 In_Frame_Del p.T565del 0.42 TCGA-D8-A1XQ-01 17 73500659 73500659 G A CASKIN2 Silent p.N436N 0.18 TCGA-D8-A1XQ-01 17 74079664 74079664 T C EXOC7 3'UTR 0.12 TCGA-D8-A1XQ-01 17 7480800 7480800 C T EIF4A1 Nonsense_Mutation p.R255* 0.13 TCGA-D8-A1XQ-01 17 7577527 7577527 G - TP53 Frame_Shift_Del p.L252Sfs*93 0.49 TCGA-D8-A1XQ-01 17 76203068 76203068 C G AFMID 3'UTR 0.48 TCGA-D8-A1XQ-01 17 76435299 76435299 C A DNAH17 Missense_Mutation p.G3879V 0.45 probably_damaging(0.988) TCGA-D8-A1XQ-01 17 7734141 7734141 C G DNAH2 Missense_Mutation p.L4071V 0.14 benign(0.07) TCGA-D8-A1XQ-01 17 77770082 77770082 A G CBX8 Missense_Mutation p.L49P 0.13 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XQ-01 17 77808811 77808811 C T CBX4 Silent p.A210A 0.18 TCGA-D8-A1XQ-01 17 79108182 79108182 C T AATK Missense_Mutation p.G59S 0.38 tolerated(0.11) benign(0.014) TCGA-D8-A1XQ-01 17 79168750 79168750 A G AZI1 Missense_Mutation p.L680S 0.15 deleterious(0) benign(0.025) TCGA-D8-A1XQ-01 17 8108653 8108653 G A AURKB Missense_Mutation p.R248C 0.14 deleterious(0.02) benign(0.017) TCGA-D8-A1XQ-01 17 8422030 8422030 T C MYH10 Missense_Mutation p.H808R 0.32 probably_damaging(0.995) TCGA-D8-A1XQ-01 18 10468572 10468572 G T APCDD1 Missense_Mutation p.M55I 0.12 tolerated(0.14) possibly_damaging(0.899) TCGA-D8-A1XQ-01 18 10803882 10803882 A T PIEZO2 Missense_Mutation p.D397E 0.12 tolerated(0.26) possibly_damaging(0.57) TCGA-D8-A1XQ-01 18 11886609 11886609 C T MPPE1 Silent p.L252L 0.17 TCGA-D8-A1XQ-01 18 12030415 12030415 G T IMPA2 Missense_Mutation p.Q275H 0.31 deleterious(0) benign(0.349) TCGA-D8-A1XQ-01 18 13049352 13049352 T A CEP192 Missense_Mutation p.N854K 0.64 tolerated(0.07) benign(0.009) TCGA-D8-A1XQ-01 18 14852029 14852029 A - ANKRD30B Frame_Shift_Del p.I1245Lfs*10 0.12 TCGA-D8-A1XQ-01 18 20815956 20815956 T C CABLES1 Missense_Mutation p.L428P 0.14 tolerated(0.15) benign(0.006) TCGA-D8-A1XQ-01 18 21422391 21422391 C A LAMA3 Missense_Mutation p.H1123Q 0.23 benign(0.018) TCGA-D8-A1XQ-01 18 23772559 23772559 T C PSMA8 3'UTR 0.27 TCGA-D8-A1XQ-01 18 33554980 33554980 T C C18orf21 Silent p.N74N 0.41 TCGA-D8-A1XQ-01 18 34320688 34320688 G T FHOD3 Nonsense_Mutation p.E1041* 0.28 TCGA-D8-A1XQ-01 18 40850290 40850290 A T SYT4 3'UTR 0.19 TCGA-D8-A1XQ-01 18 47404165 47404165 C T MYO5B Missense_Mutation p.G1122R 0.38 deleterious(0.04) probably_damaging(0.951) TCGA-D8-A1XQ-01 18 51729171 51729172 - A MBD2 Intron 0.31 TCGA-D8-A1XQ-01 18 52609946 52609946 G A CCDC68 Missense_Mutation p.T26M 0.27 deleterious(0) possibly_damaging(0.839) TCGA-D8-A1XQ-01 18 5443847 5443847 T - EPB41L3 Frame_Shift_Del p.K173Nfs*14 0.12 TCGA-D8-A1XQ-01 18 685992 685992 C A ENOSF1 Missense_Mutation p.G245C 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 18 70205913 70205913 T G CBLN2 Missense_Mutation p.K151T 0.13 deleterious(0) probably_damaging(0.983) TCGA-D8-A1XQ-01 18 76753358 76753358 G A SALL3 Missense_Mutation p.R456H 0.57 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 18 9360001 9360001 A T TWSG1 Missense_Mutation p.N52I 0.22 deleterious(0) possibly_damaging(0.735) TCGA-D8-A1XQ-01 19 1058728 1058728 G - ABCA7 Frame_Shift_Del p.R1754Qfs*10 0.21 TCGA-D8-A1XQ-01 19 12721553 12721553 G A ZNF490 5'UTR 0.16 TCGA-D8-A1XQ-01 19 12721568 12721568 C A ZNF490 5'UTR 0.14 TCGA-D8-A1XQ-01 19 12721569 12721569 A C ZNF490 5'UTR 0.14 TCGA-D8-A1XQ-01 19 12874566 12874566 C T HOOK2 Silent p.Q618Q 0.13 TCGA-D8-A1XQ-01 19 13033402 13033402 G T FARSA 3'UTR 0.27 TCGA-D8-A1XQ-01 19 13319778 13319778 G A CACNA1A Missense_Mutation p.P2191L 0.41 benign(0.005) TCGA-D8-A1XQ-01 19 13947404 13947404 C T ZSWIM4 3'Flank 0.21 TCGA-D8-A1XQ-01 19 14627523 14627525 TCT - DNAJB1 In_Frame_Del p.K182del 0.32 TCGA-D8-A1XQ-01 19 15918774 15918774 A C OR10H1 Missense_Mutation p.L25R 0.19 tolerated(0.19) possibly_damaging(0.541) TCGA-D8-A1XQ-01 19 18273878 18273878 A G PIK3R2 Missense_Mutation p.H404R 0.18 deleterious(0) probably_damaging(0.909) TCGA-D8-A1XQ-01 19 18886534 18886534 G A CRTC1 Silent p.A548A 0.45 TCGA-D8-A1XQ-01 19 19387418 19387418 G A SUGP1 3'UTR 0.20 TCGA-D8-A1XQ-01 19 22155407 22155407 C T ZNF208 Missense_Mutation p.C810Y 0.25 tolerated(0.06) unknown(0) TCGA-D8-A1XQ-01 19 23159392 23159392 A G ZNF728 Silent p.I249I 0.21 TCGA-D8-A1XQ-01 19 3113468 3113468 C A GNA11 Silent p.S154S 0.24 TCGA-D8-A1XQ-01 19 31769191 31769191 T C TSHZ3 Missense_Mutation p.K503R 0.24 tolerated(0.17) possibly_damaging(0.459) TCGA-D8-A1XQ-01 19 34843719 34843719 C T KIAA0355 Silent p.N1024N 0.14 TCGA-D8-A1XQ-01 19 35249962 35249962 G A ZNF599 Nonsense_Mutation p.R582* 0.17 TCGA-D8-A1XQ-01 19 36851395 36851395 A G ZFP14 Silent p.D59D 0.20 TCGA-D8-A1XQ-01 19 37440919 37440919 T C ZNF568 Silent p.I288I 0.15 TCGA-D8-A1XQ-01 19 38027832 38027832 G C ZNF793 Missense_Mutation p.R91T 0.41 tolerated(0.28) benign(0.321) TCGA-D8-A1XQ-01 19 38375769 38375769 A - WDR87 Frame_Shift_Del p.C2809Vfs*39 0.15 TCGA-D8-A1XQ-01 19 38382411 38382411 C - WDR87 Frame_Shift_Del p.A1020Pfs*15 0.16 TCGA-D8-A1XQ-01 19 38382421 38382421 C A WDR87 Silent p.L1016L 0.21 TCGA-D8-A1XQ-01 19 39217680 39217680 C T ACTN4 Silent p.D758D 0.10 TCGA-D8-A1XQ-01 19 39787501 39787501 T C IFNL1 Silent p.N76N 0.14 TCGA-D8-A1XQ-01 19 39963851 39963851 G A SUPT5H Missense_Mutation p.R756Q 0.29 tolerated(0.62) benign(0.028) TCGA-D8-A1XQ-01 19 4033537 4033537 G A PIAS4 Silent p.V367V 0.33 TCGA-D8-A1XQ-01 19 40580829 40580829 C A ZNF780A Missense_Mutation p.G508V 0.33 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 19 4101074 4101074 G A MAP2K2 Silent p.S216S 0.24 TCGA-D8-A1XQ-01 19 41063061 41063061 T A SPTBN4 Missense_Mutation p.W1808R 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-D8-A1XQ-01 19 41354176 41354176 A G CYP2A6 Missense_Mutation p.L201P 0.09 probably_damaging(0.999) TCGA-D8-A1XQ-01 19 41938231 41938231 G C ATP5SL Missense_Mutation p.P233A 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 19 42396865 42396865 G T ARHGEF1 Nonsense_Mutation p.E202* 0.43 TCGA-D8-A1XQ-01 19 42873850 42873850 G A MEGF8 Missense_Mutation p.C2203Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 19 43023125 43023125 G A CEACAM1 Silent p.S407S 0.18 TCGA-D8-A1XQ-01 19 43570753 43570753 C A PSG2 Splice_Site p.X322_splice 0.18 TCGA-D8-A1XQ-01 19 44619810 44619810 G C ZNF225 Intron 0.17 TCGA-D8-A1XQ-01 19 45535999 45535999 G A RELB Missense_Mutation p.R400H 0.11 tolerated(0.11) possibly_damaging(0.676) TCGA-D8-A1XQ-01 19 46124816 46124816 C T EML2 Silent p.T508T 0.32 TCGA-D8-A1XQ-01 19 46190825 46190825 T C SNRPD2 Missense_Mutation p.I115V 0.26 tolerated(0.08) benign(0) TCGA-D8-A1XQ-01 19 46997970 46997970 G A PNMAL2 Silent p.R251R 0.22 TCGA-D8-A1XQ-01 19 48248803 48248803 C T GLTSCR2 5'UTR 0.07 TCGA-D8-A1XQ-01 19 48547286 48547286 C T CABP5 5'UTR 0.44 TCGA-D8-A1XQ-01 19 48790106 48790106 A G ZNF114 Missense_Mutation p.T409A 0.11 tolerated(0.2) benign(0.025) TCGA-D8-A1XQ-01 19 49142239 49142239 C G CA11 Silent p.R289R 0.10 TCGA-D8-A1XQ-01 19 49246709 49246709 A T IZUMO1 Missense_Mutation p.D164E 0.10 deleterious(0.04) benign(0.126) TCGA-D8-A1XQ-01 19 50357782 50357782 C T PTOV1 Silent p.G97G 0.18 TCGA-D8-A1XQ-01 19 50865322 50865322 C A NAPSA Nonsense_Mutation p.G85* 0.12 TCGA-D8-A1XQ-01 19 51646010 51646010 A G SIGLEC7 Silent p.G128G 0.19 TCGA-D8-A1XQ-01 19 51958839 51958839 C A SIGLEC8 Missense_Mutation p.W295L 0.14 deleterious(0.02) benign(0.096) TCGA-D8-A1XQ-01 19 51984902 51984903 TC - CEACAM18 Frame_Shift_Del p.L282Dfs*16 0.14 TCGA-D8-A1XQ-01 19 54848965 54848965 C T LILRA4 Missense_Mutation p.V220M 0.11 tolerated(0.1) benign(0.402) TCGA-D8-A1XQ-01 19 55668470 55668470 A G TNNI3 Missense_Mutation p.I19T 0.14 tolerated(0.22) unknown(0) TCGA-D8-A1XQ-01 19 56024386 56024386 G T SSC5D Missense_Mutation p.D932Y 0.13 possibly_damaging(0.898) TCGA-D8-A1XQ-01 19 57036918 57036918 A G ZNF471 Silent p.K494K 0.09 TCGA-D8-A1XQ-01 19 57036919 57036919 G A ZNF471 Missense_Mutation p.A495T 0.09 tolerated(0.49) probably_damaging(0.995) TCGA-D8-A1XQ-01 19 57036920 57036920 C A ZNF471 Missense_Mutation p.A495D 0.10 tolerated(0.11) probably_damaging(0.998) TCGA-D8-A1XQ-01 19 9453826 9453826 A C ZNF559 3'UTR 0.17 TCGA-D8-A1XQ-01 19 9577932 9577932 C T ZNF560 Missense_Mutation p.R564Q 0.27 deleterious(0.02) possibly_damaging(0.88) TCGA-D8-A1XQ-01 19 9868615 9868615 C G ZNF846 Missense_Mutation p.G380R 0.24 tolerated(0.35) possibly_damaging(0.82) TCGA-D8-A1XQ-01 1 109242402 109242402 A C PRPF38B Silent p.S467S 0.21 TCGA-D8-A1XQ-01 1 109242410 109242410 G T PRPF38B Missense_Mutation p.R470L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1XQ-01 1 109794904 109794904 A G CELSR2 Missense_Mutation p.S735G 0.23 deleterious(0.03) benign(0.173) TCGA-D8-A1XQ-01 1 111060392 111060392 G A KCNA10 Silent p.L340L 0.10 TCGA-D8-A1XQ-01 1 111784919 111784919 G A CHI3L2 Missense_Mutation p.G369D 0.21 deleterious(0.01) benign(0.112) TCGA-D8-A1XQ-01 1 114646335 114646335 C A SYT6 Silent p.V275V 0.18 TCGA-D8-A1XQ-01 1 116206690 116206690 G C VANGL1 Missense_Mutation p.G205R 0.12 tolerated(0.12) probably_damaging(0.991) TCGA-D8-A1XQ-01 1 116926693 116926693 A - ATP1A1 Frame_Shift_Del p.K25Rfs*11 0.23 TCGA-D8-A1XQ-01 1 117142951 117142951 G T IGSF3 Silent p.V567V 0.12 TCGA-D8-A1XQ-01 1 11852409 11852409 C G MTHFR Missense_Mutation p.E520Q 0.16 tolerated(0.05) benign(0.211) TCGA-D8-A1XQ-01 1 11854032 11854032 T C MTHFR Missense_Mutation p.I488V 0.20 tolerated(1) benign(0.001) TCGA-D8-A1XQ-01 1 118574360 118574360 T G SPAG17 Missense_Mutation p.K1188N 0.20 deleterious(0.02) possibly_damaging(0.843) TCGA-D8-A1XQ-01 1 12266954 12266954 C A TNFRSF1B Silent p.V421V 0.14 TCGA-D8-A1XQ-01 1 1249259 1249259 C T CPSF3L Silent p.G276G 0.23 TCGA-D8-A1XQ-01 1 14109029 14109029 G A PRDM2 Missense_Mutation p.R1580K 0.20 unknown(0) TCGA-D8-A1XQ-01 1 145557093 145557093 G A ANKRD35 Missense_Mutation p.C102Y 0.06 deleterious(0) probably_damaging(0.951) TCGA-D8-A1XQ-01 1 145698997 145698997 T C CD160 Missense_Mutation p.E165G 0.07 tolerated(0.07) possibly_damaging(0.755) TCGA-D8-A1XQ-01 1 146757127 146757127 A G CHD1L Missense_Mutation p.K661E 0.08 tolerated(0.26) benign(0.001) TCGA-D8-A1XQ-01 1 149901062 149901062 C T MTMR11 Missense_Mutation p.A697T 0.56 tolerated_low_confidence(0.37) benign(0.002) TCGA-D8-A1XQ-01 1 150531819 150531819 A T ADAMTSL4 Missense_Mutation p.K940N 0.65 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 1 150799086 150799086 A G ARNT Missense_Mutation p.L392S 0.74 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 1 150921624 150921624 G A SETDB1 Missense_Mutation p.V432I 0.07 tolerated(0.08) probably_damaging(0.99) TCGA-D8-A1XQ-01 1 151134432 151134432 C G LYSMD1 Missense_Mutation p.V109L 0.04 tolerated(0.34) benign(0.011) TCGA-D8-A1XQ-01 1 152082115 152082115 T C TCHH Missense_Mutation p.Q1193R 0.13 unknown(0) TCGA-D8-A1XQ-01 1 152326432 152326432 T C FLG2 Missense_Mutation p.D1277G 0.13 benign(0.042) TCGA-D8-A1XQ-01 1 152552220 152552220 G A LCE3D Missense_Mutation p.R65C 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-D8-A1XQ-01 1 153634839 153634839 C - ILF2 3'UTR 0.14 TCGA-D8-A1XQ-01 1 153945260 153945260 G A CREB3L4 Missense_Mutation p.R195H 0.11 tolerated(0.18) benign(0.014) TCGA-D8-A1XQ-01 1 154548259 154548259 G A CHRNB2 Missense_Mutation p.V454I 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1XQ-01 1 155733356 155733356 C T GON4L Splice_Site p.X1492_splice 0.05 TCGA-D8-A1XQ-01 1 156214983 156214983 C A PAQR6 Nonsense_Mutation p.G81* 0.17 TCGA-D8-A1XQ-01 1 156513961 156513961 G A IQGAP3 Missense_Mutation p.H815Y 0.09 deleterious(0) benign(0.044) TCGA-D8-A1XQ-01 1 156713979 156713979 C T HDGF Silent p.K171K 0.11 TCGA-D8-A1XQ-01 1 156882061 156882063 AGA GG PEAR1 Frame_Shift_Del p.N660Tfs*25 0.17 TCGA-D8-A1XQ-01 1 157648595 157648595 C G FCRL3 Missense_Mutation p.A704P 0.11 tolerated(0.27) benign(0.034) TCGA-D8-A1XQ-01 1 158057581 158057581 C T KIRREL Missense_Mutation p.T233M 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-D8-A1XQ-01 1 159035971 159035971 G T AIM2 Missense_Mutation p.A182D 0.13 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XQ-01 1 159275798 159275798 T C FCER1A Missense_Mutation p.S118P 0.16 deleterious(0.04) benign(0.356) TCGA-D8-A1XQ-01 1 159409646 159409646 A C OR10J1 Missense_Mutation p.E33A 0.10 deleterious(0.03) benign(0.271) TCGA-D8-A1XQ-01 1 161023138 161023138 C T ARHGAP30 Missense_Mutation p.A192T 0.16 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 1 161123814 161123815 TG - UFC1 Frame_Shift_Del p.S11* 0.10 TCGA-D8-A1XQ-01 1 161183502 161183502 G A NDUFS2 Missense_Mutation p.A426T 0.16 deleterious(0.01) possibly_damaging(0.817) TCGA-D8-A1XQ-01 1 166833124 166833124 G A TADA1 Silent p.S89S 0.07 TCGA-D8-A1XQ-01 1 171293346 171293346 A G FMO4 Missense_Mutation p.T131A 0.14 tolerated(0.47) benign(0.284) TCGA-D8-A1XQ-01 1 172357842 172357842 C A DNM3 Silent p.V805V 0.08 TCGA-D8-A1XQ-01 1 172357843 172357843 C A DNM3 Missense_Mutation p.P806T 0.08 deleterious_low_confidence(0.03) benign(0.039) TCGA-D8-A1XQ-01 1 173916576 173916576 A G RC3H1 Missense_Mutation p.Y890H 0.10 deleterious(0) probably_damaging(0.949) TCGA-D8-A1XQ-01 1 175066652 175066652 T C TNN Missense_Mutation p.V563A 0.09 deleterious(0) probably_damaging(0.963) TCGA-D8-A1XQ-01 1 179077894 179077894 T - ABL2 Frame_Shift_Del p.K836Nfs*34 0.16 TCGA-D8-A1XQ-01 1 180165581 180165581 C T QSOX1 Silent p.A551A 0.18 TCGA-D8-A1XQ-01 1 180243355 180243355 A G LHX4 Missense_Mutation p.R272G 0.14 tolerated(1) benign(0) TCGA-D8-A1XQ-01 1 181754521 181754521 G T CACNA1E Missense_Mutation p.K1882N 0.18 deleterious(0) benign(0.02) TCGA-D8-A1XQ-01 1 182920474 182920474 A T SHCBP1L Silent p.P178P 0.14 TCGA-D8-A1XQ-01 1 183086705 183086705 A G LAMC1 Missense_Mutation p.Q575R 0.07 deleterious(0) possibly_damaging(0.859) TCGA-D8-A1XQ-01 1 183204803 183204803 T A LAMC2 Missense_Mutation p.H798Q 0.33 tolerated(0.61) benign(0) TCGA-D8-A1XQ-01 1 183534900 183534900 C T NCF2 Silent p.P313P 0.10 TCGA-D8-A1XQ-01 1 190067686 190067686 A C BRINP3 Missense_Mutation p.V588G 0.16 deleterious(0) possibly_damaging(0.69) TCGA-D8-A1XQ-01 1 192335049 192335049 A G RGS21 Splice_Site p.X86_splice 0.21 TCGA-D8-A1XQ-01 1 197128647 197128647 C T ZBTB41 Missense_Mutation p.E858K 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 1 200143343 200143343 C A NR5A2 3'UTR 0.18 TCGA-D8-A1XQ-01 1 200819218 200819218 A - CAMSAP2 Frame_Shift_Del p.N1109Mfs*4 0.19 TCGA-D8-A1XQ-01 1 200826904 200826904 A G CAMSAP2 Missense_Mutation p.N1385S 0.24 deleterious(0) possibly_damaging(0.609) TCGA-D8-A1XQ-01 1 200860730 200860730 G - C1orf106 5'Flank 0.26 TCGA-D8-A1XQ-01 1 201780818 201780818 G A NAV1 Missense_Mutation p.D1629N 0.17 tolerated(1) possibly_damaging(0.604) TCGA-D8-A1XQ-01 1 202724577 202724577 A G KDM5B Missense_Mutation p.Y454H 0.21 deleterious(0) probably_damaging(0.954) TCGA-D8-A1XQ-01 1 203138485 203138485 G A MYBPH Nonsense_Mutation p.R376* 0.19 TCGA-D8-A1XQ-01 1 203452475 203452475 C T PRELP Missense_Mutation p.P55S 0.15 deleterious(0.02) benign(0.259) TCGA-D8-A1XQ-01 1 20471184 20471184 T C PLA2G2F Splice_Site p.X142_splice 0.21 TCGA-D8-A1XQ-01 1 206224648 206224648 C T AVPR1B Missense_Mutation p.H70Y 0.17 tolerated(0.2) possibly_damaging(0.896) TCGA-D8-A1XQ-01 1 206611317 206611317 A T SRGAP2 Missense_Mutation p.E460V 0.15 deleterious(0) probably_damaging(0.949) TCGA-D8-A1XQ-01 1 20976973 20976973 G - PINK1 Frame_Shift_Del p.G513Vfs*5 0.31 TCGA-D8-A1XQ-01 1 209797202 209797202 C T LAMB3 Missense_Mutation p.S707N 0.07 tolerated(0.43) benign(0.097) TCGA-D8-A1XQ-01 1 212968443 212968443 G A TATDN3 Missense_Mutation p.D25N 0.13 tolerated(0.15) benign(0.02) TCGA-D8-A1XQ-01 1 214169999 214169999 T - PROX1 Frame_Shift_Del p.F42Lfs*4 0.13 TCGA-D8-A1XQ-01 1 215785258 215785258 A - KCTD3 Frame_Shift_Del p.R521Efs*18 0.16 TCGA-D8-A1XQ-01 1 22174272 22174272 C T HSPG2 Silent p.Q2645Q 0.17 TCGA-D8-A1XQ-01 1 222806559 222806560 AT - MIA3 Frame_Shift_Del p.Y1150Ffs*8 0.10 TCGA-D8-A1XQ-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.10 TCGA-D8-A1XQ-01 1 224804847 224804847 C T CNIH3 5'UTR 0.13 TCGA-D8-A1XQ-01 1 228295703 228295703 A G MRPL55 Missense_Mutation p.C37R 0.22 deleterious_low_confidence(0.01) benign(0) TCGA-D8-A1XQ-01 1 228345526 228345526 G T GJC2 Missense_Mutation p.V23L 0.15 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 1 235383212 235383212 T - ARID4B Frame_Shift_Del p.K493Nfs*18 0.17 TCGA-D8-A1XQ-01 1 241755385 241755385 G A KMO Missense_Mutation p.R464Q 0.15 tolerated_low_confidence(0.56) benign(0.001) TCGA-D8-A1XQ-01 1 245021466 245021466 A G HNRNPU Silent p.H447H 0.12 TCGA-D8-A1XQ-01 1 247050544 247050544 C G AHCTF1 Missense_Mutation p.G823A 0.24 tolerated(0.19) possibly_damaging(0.832) TCGA-D8-A1XQ-01 1 248059405 248059405 G A OR2W3 Missense_Mutation p.E173K 0.27 tolerated(0.56) benign(0.002) TCGA-D8-A1XQ-01 1 27624574 27624574 C T WDTC1 Nonsense_Mutation p.R401* 0.18 TCGA-D8-A1XQ-01 1 29189599 29189599 A G OPRD1 Missense_Mutation p.Y308C 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 1 32937111 32937111 G A ZBTB8B Missense_Mutation p.A296T 0.20 tolerated(0.3) benign(0.001) TCGA-D8-A1XQ-01 1 3545009 3545009 A - TPRG1L Frame_Shift_Del p.A223Pfs*15 0.15 TCGA-D8-A1XQ-01 1 35972480 35972480 T - KIAA0319L Frame_Shift_Del p.K133Nfs*22 0.13 TCGA-D8-A1XQ-01 1 36026235 36026235 T C NCDN Silent p.A161A 0.19 TCGA-D8-A1XQ-01 1 36055628 36055628 C T TFAP2E Silent p.L295L 0.17 TCGA-D8-A1XQ-01 1 36229911 36229911 T - CLSPN Frame_Shift_Del p.M180Wfs*7 0.17 TCGA-D8-A1XQ-01 1 36520695 36520695 A G AGO3 Missense_Mutation p.H808R 0.15 tolerated(0.08) benign(0.311) TCGA-D8-A1XQ-01 1 36559082 36559082 T C ADPRHL2 3'UTR 0.20 TCGA-D8-A1XQ-01 1 36939169 36939169 C A CSF3R Missense_Mutation p.K180N 0.19 tolerated(0.11) benign(0.002) TCGA-D8-A1XQ-01 1 38005843 38005843 A G SNIP1 Missense_Mutation p.Y281H 0.10 deleterious(0) possibly_damaging(0.833) TCGA-D8-A1XQ-01 1 38343876 38343876 G T INPP5B Nonsense_Mutation p.S554* 0.23 TCGA-D8-A1XQ-01 1 38463195 38463195 C T FHL3 Missense_Mutation p.R242Q 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-D8-A1XQ-01 1 40701830 40701830 G T RLF Nonsense_Mutation p.E486* 0.12 TCGA-D8-A1XQ-01 1 44415402 44415402 G A IPO13 Missense_Mutation p.S133N 0.23 tolerated(1) benign(0.001) TCGA-D8-A1XQ-01 1 44437174 44437174 G A DPH2 Silent p.G200G 0.23 TCGA-D8-A1XQ-01 1 44474088 44474088 C T SLC6A9 Missense_Mutation p.S249N 0.14 tolerated(0.5) benign(0.1) TCGA-D8-A1XQ-01 1 47653030 47653030 A G PDZK1IP1 Missense_Mutation p.I46T 0.16 deleterious(0) possibly_damaging(0.824) TCGA-D8-A1XQ-01 1 48821396 48821396 A G SPATA6 Silent p.H380H 0.15 TCGA-D8-A1XQ-01 1 51613416 51613416 T C C1orf185 Silent p.T191T 0.23 TCGA-D8-A1XQ-01 1 52344171 52344172 AG - NRD1 Frame_Shift_Del p.S39Cfs*25 0.26 TCGA-D8-A1XQ-01 1 55085649 55085649 G T FAM151A Silent p.A50A 0.29 TCGA-D8-A1XQ-01 1 57409414 57409414 C A C8B Missense_Mutation p.G397C 0.17 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 1 66834548 66834548 C T PDE4B Missense_Mutation p.R581C 0.12 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XQ-01 1 74575160 74575160 T A LRRIQ3 Missense_Mutation p.K262I 0.20 deleterious(0.01) benign(0.316) TCGA-D8-A1XQ-01 1 75190519 75190519 C T CRYZ Splice_Site 0.14 TCGA-D8-A1XQ-01 1 76387846 76387847 - A ASB17 Frame_Shift_Ins p.L200Ffs*3 0.08 TCGA-D8-A1XQ-01 1 78392424 78392424 A - NEXN Frame_Shift_Del p.E240Nfs*8 0.25 TCGA-D8-A1XQ-01 1 78408258 78408258 C T NEXN Missense_Mutation p.T591I 0.11 tolerated(0.56) benign(0.004) TCGA-D8-A1XQ-01 1 84986376 84986376 C T SPATA1 Splice_Site 0.17 TCGA-D8-A1XQ-01 1 85499890 85499890 C A MCOLN3 Missense_Mutation p.E147D 0.14 tolerated(0.45) benign(0.002) TCGA-D8-A1XQ-01 1 86894111 86894111 T C CLCA2 Missense_Mutation p.I112T 0.16 deleterious(0.01) possibly_damaging(0.719) TCGA-D8-A1XQ-01 1 89479814 89479814 G T GBP3 Missense_Mutation p.P193T 0.14 tolerated(0.15) benign(0.006) TCGA-D8-A1XQ-01 1 89735377 89735377 A - GBP5 Intron 0.44 TCGA-D8-A1XQ-01 1 90400731 90400731 A G LRRC8D Missense_Mutation p.I702V 0.15 tolerated(0.07) probably_damaging(0.954) TCGA-D8-A1XQ-01 1 99422292 99422292 T C LPPR5 Missense_Mutation p.I81M 0.17 tolerated(0.08) benign(0.012) TCGA-D8-A1XQ-01 1 99767348 99767348 C A LPPR4 Silent p.I287I 0.15 TCGA-D8-A1XQ-01 20 10256204 10256204 C G SNAP25 Missense_Mutation p.A22G 0.32 deleterious(0.02) benign(0) TCGA-D8-A1XQ-01 20 126075 126075 G - DEFB126 Frame_Shift_Del p.K26Nfs*3 0.19 TCGA-D8-A1XQ-01 20 16729577 16729577 A - OTOR Frame_Shift_Del p.Q64Sfs*10 0.21 TCGA-D8-A1XQ-01 20 17475657 17475657 G A BFSP1 Nonsense_Mutation p.Q354* 0.22 TCGA-D8-A1XQ-01 20 1896099 1896099 G A SIRPA Missense_Mutation p.R145H 0.21 tolerated(0.6) benign(0.003) TCGA-D8-A1XQ-01 20 1903212 1903212 C T SIRPA Silent p.D336D 0.20 TCGA-D8-A1XQ-01 20 20582459 20582459 G A RALGAPA2 Silent p.T690T 0.22 TCGA-D8-A1XQ-01 20 23066230 23066230 G T CD93 Silent p.T200T 0.19 TCGA-D8-A1XQ-01 20 24930099 24930099 C T CST7 5'UTR 0.17 TCGA-D8-A1XQ-01 20 2517917 2517917 C T TMC2 Nonsense_Mutation p.R13* 0.27 TCGA-D8-A1XQ-01 20 25257395 25257395 T C PYGB Splice_Site p.X258_splice 0.09 TCGA-D8-A1XQ-01 20 30738461 30738461 G A TM9SF4 Missense_Mutation p.R375Q 0.10 deleterious(0.03) probably_damaging(0.924) TCGA-D8-A1XQ-01 20 31021221 31021221 A G ASXL1 Missense_Mutation p.H407R 0.18 tolerated(0.28) probably_damaging(0.996) TCGA-D8-A1XQ-01 20 32439958 32439958 G A CHMP4B Missense_Mutation p.E187K 0.09 tolerated(0.36) benign(0.021) TCGA-D8-A1XQ-01 20 32441480 32441480 C T CHMP4B 3'UTR 0.24 TCGA-D8-A1XQ-01 20 32660049 32660049 T C RALY Missense_Mutation p.Y57H 0.18 deleterious(0.02) possibly_damaging(0.897) TCGA-D8-A1XQ-01 20 33303055 33303056 - T NCOA6 3'UTR 0.10 TCGA-D8-A1XQ-01 20 33703267 33703267 A G EDEM2 Missense_Mutation p.L569S 0.17 deleterious_low_confidence(0) benign(0.108) TCGA-D8-A1XQ-01 20 34611658 34611658 A - CNBD2 Frame_Shift_Del p.K466Sfs*3 0.11 TCGA-D8-A1XQ-01 20 35431445 35431445 C T SOGA1 Silent p.Q1051Q 0.08 TCGA-D8-A1XQ-01 20 37632533 37632533 T C DHX35 Missense_Mutation p.S332P 0.11 tolerated(1) benign(0) TCGA-D8-A1XQ-01 20 3804929 3804929 C T AP5S1 Silent p.A196A 0.26 TCGA-D8-A1XQ-01 20 3904065 3904065 A T PANK2 3'UTR 0.13 TCGA-D8-A1XQ-01 20 40790037 40790037 C T PTPRT Silent p.T879T 0.10 TCGA-D8-A1XQ-01 20 43743663 43743663 G A WFDC5 Missense_Mutation p.A21V 0.13 tolerated(0.21) benign(0.177) TCGA-D8-A1XQ-01 20 44506372 44506372 T C ZSWIM3 Missense_Mutation p.M392T 0.19 deleterious(0.03) probably_damaging(0.983) TCGA-D8-A1XQ-01 20 45130337 45130337 A G ZNF334 Silent p.N547N 0.16 TCGA-D8-A1XQ-01 20 47731322 47731322 C T STAU1 3'UTR 0.11 TCGA-D8-A1XQ-01 20 47858511 47858511 A G DDX27 Missense_Mutation p.K691R 0.19 tolerated(0.07) benign(0.222) TCGA-D8-A1XQ-01 20 50256004 50256004 G T ATP9A Missense_Mutation p.L516M 0.15 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XQ-01 20 55209319 55209319 T C TFAP2C Missense_Mutation p.V306A 0.14 deleterious(0.02) probably_damaging(0.965) TCGA-D8-A1XQ-01 20 57276201 57276201 G A NPEPL1 Missense_Mutation p.S270N 0.14 deleterious(0.01) possibly_damaging(0.506) TCGA-D8-A1XQ-01 20 60498601 60498601 G A CDH4 Silent p.Q489Q 0.21 TCGA-D8-A1XQ-01 20 61588223 61588223 G A SLC17A9 Missense_Mutation p.G56S 0.23 tolerated(0.1) benign(0.21) TCGA-D8-A1XQ-01 20 61981463 61981463 G A CHRNA4 Missense_Mutation p.P434S 0.35 tolerated(0.3) benign(0.363) TCGA-D8-A1XQ-01 20 61981948 61981948 C T CHRNA4 Missense_Mutation p.G272D 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 20 8609062 8609064 AAG - PLCB1 In_Frame_Del p.E125del 0.24 TCGA-D8-A1XQ-01 20 9523310 9523311 - G PAK7 Frame_Shift_Ins p.Y643Lfs*4 0.21 TCGA-D8-A1XQ-01 21 19775875 19775875 G A TMPRSS15 Missense_Mutation p.A22V 0.41 tolerated(0.28) benign(0.005) TCGA-D8-A1XQ-01 21 34134427 34134438 TGTCTTTGTGAC - PAXBP1 In_Frame_Del p.S281_Q284del 0.13 TCGA-D8-A1XQ-01 21 34617290 34617290 A G IFNAR2 Silent p.S44S 0.23 TCGA-D8-A1XQ-01 21 35183328 35183328 A G ITSN1 Missense_Mutation p.K790R 0.18 tolerated(0.77) benign(0.102) TCGA-D8-A1XQ-01 21 35893632 35893632 T C RCAN1 Intron 0.44 TCGA-D8-A1XQ-01 21 40646341 40646341 T A BRWD1 Missense_Mutation p.E401D 0.15 deleterious(0.03) probably_damaging(0.952) TCGA-D8-A1XQ-01 21 43535985 43535985 G A UMODL1 Missense_Mutation p.A917T 0.10 deleterious(0.01) possibly_damaging(0.682) TCGA-D8-A1XQ-01 21 43959732 43959732 G A SLC37A1 Missense_Mutation p.S154N 0.19 tolerated(0.4) benign(0.075) TCGA-D8-A1XQ-01 21 45819238 45819238 G A TRPM2 Missense_Mutation p.V708M 0.23 deleterious(0.04) probably_damaging(0.981) TCGA-D8-A1XQ-01 21 46907403 46907403 C T COL18A1 Nonsense_Mutation p.R806* 0.27 TCGA-D8-A1XQ-01 21 47333863 47333863 A T PCBP3 Splice_Site p.X201_splice 0.29 TCGA-D8-A1XQ-01 21 47611798 47611798 C T LSS Silent p.P688P 0.15 TCGA-D8-A1XQ-01 21 47663638 47663638 T C MCM3AP Splice_Site p.X1680_splice 0.27 TCGA-D8-A1XQ-01 21 47847579 47847579 A C PCNT Missense_Mutation p.Q2455P 0.29 possibly_damaging(0.507) TCGA-D8-A1XQ-01 21 48022227 48022227 C A S100B Missense_Mutation p.K34N 0.22 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XQ-01 22 18016903 18016903 A - CECR2 Frame_Shift_Del p.K388Rfs*19 0.30 TCGA-D8-A1XQ-01 22 19394707 19394707 G A HIRA Missense_Mutation p.T101M 0.24 deleterious(0.05) benign(0.247) TCGA-D8-A1XQ-01 22 21330779 21330779 A G AIFM3 Missense_Mutation p.R328G 0.32 tolerated(0.11) benign(0.139) TCGA-D8-A1XQ-01 22 22036757 22036757 A G PPIL2 Missense_Mutation p.N140S 0.08 tolerated(0.12) benign(0.091) TCGA-D8-A1XQ-01 22 22749557 22749557 C A IGLV7-43 Silent p.P27P 0.11 TCGA-D8-A1XQ-01 22 22749779 22749779 T C IGLV7-43 Silent p.P101P 0.14 TCGA-D8-A1XQ-01 22 23235986 23235986 G C IGLL5 Missense_Mutation p.V105L 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-D8-A1XQ-01 22 30210719 30210719 C T ASCC2 Missense_Mutation p.G216E 0.23 tolerated(1) benign(0.025) TCGA-D8-A1XQ-01 22 32211093 32211093 T A DEPDC5 Missense_Mutation p.S521T 0.26 tolerated(0.17) probably_damaging(0.993) TCGA-D8-A1XQ-01 22 33402627 33402627 A T SYN3 Silent p.R7R 0.14 TCGA-D8-A1XQ-01 22 36661457 36661457 T A APOL1 Missense_Mutation p.V208D 0.10 deleterious(0) benign(0.131) TCGA-D8-A1XQ-01 22 36920752 36920752 C T EIF3D Missense_Mutation p.G66E 0.09 deleterious(0) probably_damaging(0.976) TCGA-D8-A1XQ-01 22 37770126 37770126 G A ELFN2 Silent p.T483T 0.15 TCGA-D8-A1XQ-01 22 38017668 38017668 G A GGA1 Missense_Mutation p.A192T 0.15 deleterious(0.01) possibly_damaging(0.509) TCGA-D8-A1XQ-01 22 38028008 38028008 A G GGA1 Missense_Mutation p.I512V 0.39 tolerated(0.47) benign(0) TCGA-D8-A1XQ-01 22 38039004 38039004 G A SH3BP1 Silent p.R129R 0.28 TCGA-D8-A1XQ-01 22 38151164 38151164 C T TRIOBP Silent p.Y1848Y 0.16 TCGA-D8-A1XQ-01 22 40760968 40760968 C T ADSL Missense_Mutation p.R426C 0.06 deleterious(0) probably_damaging(0.983) TCGA-D8-A1XQ-01 22 42049645 42049645 G A XRCC6 Silent p.V414V 0.22 TCGA-D8-A1XQ-01 22 46759045 46759045 C T CELSR1 3'UTR 0.16 TCGA-D8-A1XQ-01 22 47061530 47061530 T C GRAMD4 Missense_Mutation p.W246R 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-D8-A1XQ-01 22 50301580 50301580 G A ALG12 Silent p.L261L 0.19 TCGA-D8-A1XQ-01 22 50615379 50615379 T C PANX2 Missense_Mutation p.Y80H 0.13 tolerated(0.07) probably_damaging(0.998) TCGA-D8-A1XQ-01 22 50656038 50656038 T A SELO 3'UTR 0.27 TCGA-D8-A1XQ-01 22 50900429 50900429 G A SBF1 Missense_Mutation p.T839M 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-D8-A1XQ-01 22 51063819 51063819 C T ARSA Silent p.P428P 0.23 TCGA-D8-A1XQ-01 2 100925592 100925592 G C LONRF2 Missense_Mutation p.Q259E 0.54 deleterious(0.02) probably_damaging(0.977) TCGA-D8-A1XQ-01 2 102842496 102842496 T C IL1RL2 Missense_Mutation p.I377T 0.40 tolerated(0.47) benign(0.002) TCGA-D8-A1XQ-01 2 10937874 10937874 G T PDIA6 Missense_Mutation p.H57Q 0.24 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XQ-01 2 114256957 114256959 GAG - FOXD4L1 In_Frame_Del p.E45del 0.10 TCGA-D8-A1XQ-01 2 114399815 114399815 G A RABL2A 3'UTR 0.22 TCGA-D8-A1XQ-01 2 11728914 11728914 T G GREB1 Missense_Mutation p.V401G 0.12 deleterious(0) possibly_damaging(0.857) TCGA-D8-A1XQ-01 2 11767230 11767230 G A GREB1 Silent p.Q1483Q 0.15 TCGA-D8-A1XQ-01 2 118715997 118715997 G A CCDC93 Missense_Mutation p.R317W 0.34 deleterious(0) possibly_damaging(0.716) TCGA-D8-A1XQ-01 2 119751999 119751999 G A MARCO Missense_Mutation p.R489Q 0.26 tolerated(0.54) unknown(0) TCGA-D8-A1XQ-01 2 125192222 125192222 T G CNTNAP5 Missense_Mutation p.L231V 0.21 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 2 128262356 128262356 T - IWS1 Frame_Shift_Del p.M375Wfs*15 0.19 TCGA-D8-A1XQ-01 2 128466383 128466383 A G WDR33 Missense_Mutation p.S1217P 0.25 tolerated_low_confidence(0.59) possibly_damaging(0.665) TCGA-D8-A1XQ-01 2 131810547 131810547 G - FAM168B Frame_Shift_Del p.H173Tfs*63 0.15 TCGA-D8-A1XQ-01 2 132021661 132021661 T C POTEE Missense_Mutation p.L878P 0.15 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-D8-A1XQ-01 2 132235782 132235782 G A TUBA3D Missense_Mutation p.G17S 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D8-A1XQ-01 2 133403188 133403188 C T LYPD1 3'UTR 0.11 TCGA-D8-A1XQ-01 2 135985408 135985410 TCT - ZRANB3 In_Frame_Del p.E710del 0.22 TCGA-D8-A1XQ-01 2 136579807 136579807 G A LCT Intron 0.30 TCGA-D8-A1XQ-01 2 138722006 138722008 AGA - HNMT 5'UTR 0.23 TCGA-D8-A1XQ-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.09 TCGA-D8-A1XQ-01 2 149847639 149847639 C T KIF5C Missense_Mutation p.A611V 0.55 tolerated(0.29) benign(0.017) TCGA-D8-A1XQ-01 2 1507765 1507765 C G TPO Missense_Mutation p.S811C 0.18 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 2 151326702 151326702 T C RND3 Silent p.S178S 0.07 TCGA-D8-A1XQ-01 2 153527793 153527793 T - PRPF40A Frame_Shift_Del p.E492Kfs*16 0.10 TCGA-D8-A1XQ-01 2 153532999 153532999 A G PRPF40A Silent p.S317S 0.11 TCGA-D8-A1XQ-01 2 160289269 160289269 T C BAZ2B Silent p.S633S 0.06 TCGA-D8-A1XQ-01 2 160958270 160958270 C T ITGB6 Missense_Mutation p.V782I 0.14 tolerated_low_confidence(0.44) benign(0.001) TCGA-D8-A1XQ-01 2 161051887 161051887 G T ITGB6 Missense_Mutation p.P196T 0.15 deleterious(0) probably_damaging(0.981) TCGA-D8-A1XQ-01 2 1652615 1652615 G A PXDN Silent p.N979N 0.09 TCGA-D8-A1XQ-01 2 165365340 165365340 A - GRB14 Frame_Shift_Del p.F280Sfs*40 0.17 TCGA-D8-A1XQ-01 2 170127436 170127436 A - LRP2 Frame_Shift_Del p.F766Lfs*46 0.18 TCGA-D8-A1XQ-01 2 170386307 170386307 A G FASTKD1 3'UTR 0.11 TCGA-D8-A1XQ-01 2 172411120 172411120 T - CYBRD1 Frame_Shift_Del p.W217Gfs*2 0.15 TCGA-D8-A1XQ-01 2 172641950 172641950 C T SLC25A12 Missense_Mutation p.R624H 0.20 tolerated(0.27) benign(0.008) TCGA-D8-A1XQ-01 2 178080589 178080589 C T HNRNPA3 Missense_Mutation p.R103C 0.19 deleterious(0.04) benign(0.006) TCGA-D8-A1XQ-01 2 179468913 179468913 A G TTN Silent p.P18167P 0.19 TCGA-D8-A1XQ-01 2 179473134 179473134 A G TTN Silent p.N17492N 0.65 TCGA-D8-A1XQ-01 2 179602944 179602944 A G TTN Missense_Mutation p.C4746R 0.07 TCGA-D8-A1XQ-01 2 179613017 179613017 C T TTN Intron 0.08 TCGA-D8-A1XQ-01 2 180835741 180835741 G A CWC22 Silent p.S289S 0.35 TCGA-D8-A1XQ-01 2 182543294 182543294 A G NEUROD1 Silent p.R98R 0.23 TCGA-D8-A1XQ-01 2 183129052 183129052 T C PDE1A Missense_Mutation p.E64G 0.13 deleterious(0) probably_damaging(0.918) TCGA-D8-A1XQ-01 2 198643760 198643760 A - BOLL Frame_Shift_Del p.S66Pfs*6 0.12 TCGA-D8-A1XQ-01 2 201728972 201728972 T C CLK1 5'UTR 0.29 TCGA-D8-A1XQ-01 2 206892860 206892860 G A INO80D Missense_Mutation p.R425W 0.19 deleterious(0.03) possibly_damaging(0.59) TCGA-D8-A1XQ-01 2 211019076 211019076 G A KANSL1L Silent p.Y77Y 0.15 TCGA-D8-A1XQ-01 2 219314015 219314015 C T VIL1 Nonsense_Mutation p.R814* 0.20 TCGA-D8-A1XQ-01 2 227974003 227974003 C A COL4A4 Splice_Site p.X199_splice 0.17 TCGA-D8-A1XQ-01 2 228563696 228563696 A G SLC19A3 Silent p.N245N 0.17 TCGA-D8-A1XQ-01 2 228882606 228882606 G A SPHKAP Silent p.S988S 0.33 TCGA-D8-A1XQ-01 2 230672494 230672494 G A TRIP12 Missense_Mutation p.A761V 0.23 tolerated(0.57) benign(0.079) TCGA-D8-A1XQ-01 2 232326496 232326496 C G NCL Missense_Mutation p.G123A 0.19 unknown(0) TCGA-D8-A1XQ-01 2 234846052 234846052 A T TRPM8 Missense_Mutation p.I83F 0.16 tolerated(0.52) benign(0.027) TCGA-D8-A1XQ-01 2 238999869 238999869 A G SCLY Missense_Mutation p.T307A 0.18 deleterious(0.01) benign(0.293) TCGA-D8-A1XQ-01 2 239162058 239162058 G - PER2 Frame_Shift_Del p.P869Rfs*150 0.22 TCGA-D8-A1XQ-01 2 239975187 239975187 G A HDAC4 Silent p.L1062L 0.12 TCGA-D8-A1XQ-01 2 25037246 25037246 T C CENPO Missense_Mutation p.V73A 0.09 tolerated(0.8) benign(0.007) TCGA-D8-A1XQ-01 2 27322379 27322379 C T KHK Missense_Mutation p.R249C 0.17 tolerated(0.07) benign(0.013) TCGA-D8-A1XQ-01 2 27688295 27688295 T C IFT172 Silent p.Q640Q 0.13 TCGA-D8-A1XQ-01 2 28066017 28066017 C T RBKS Missense_Mutation p.S144N 0.17 tolerated(0.14) benign(0.003) TCGA-D8-A1XQ-01 2 33588538 33588538 A G LTBP1 Missense_Mutation p.Y1451C 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-D8-A1XQ-01 2 39250249 39250249 A G SOS1 Silent p.C440C 0.14 TCGA-D8-A1XQ-01 2 42282457 42282457 G T PKDCC Silent p.L382L 0.14 TCGA-D8-A1XQ-01 2 42578406 42578406 A G COX7A2L Missense_Mutation p.Y100H 0.27 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 2 43804188 43804200 GCAGTATCCAAGA - THADA Frame_Shift_Del p.L333Hfs*7 0.16 TCGA-D8-A1XQ-01 2 43939380 43939380 A T PLEKHH2 Missense_Mutation p.H773L 0.24 deleterious(0.01) benign(0.016) TCGA-D8-A1XQ-01 2 46707678 46707678 C T TMEM247 Silent p.G84G 0.12 TCGA-D8-A1XQ-01 2 48915224 48915224 A G LHCGR Missense_Mutation p.M571T 0.12 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 2 54858526 54858526 C T SPTBN1 Silent p.Y1114Y 0.16 TCGA-D8-A1XQ-01 2 55143983 55143983 G A EML6 Missense_Mutation p.V1196I 0.11 tolerated(0.26) benign(0.047) TCGA-D8-A1XQ-01 2 55471321 55471322 AG - MTIF2 Frame_Shift_Del p.S385Cfs*16 0.15 TCGA-D8-A1XQ-01 2 55863423 55863423 A G PNPT1 Silent p.S767S 0.14 TCGA-D8-A1XQ-01 2 60679590 60679590 C T BCL11A 3'Flank 0.16 TCGA-D8-A1XQ-01 2 61430400 61430400 T C USP34 Splice_Site p.X3129_splice 0.14 TCGA-D8-A1XQ-01 2 62053700 62053700 T C FAM161A Missense_Mutation p.N681D 0.08 tolerated(0.18) benign(0.027) TCGA-D8-A1XQ-01 2 62063204 62063204 G A FAM161A Silent p.L598L 0.10 TCGA-D8-A1XQ-01 2 71415480 71415480 G A PAIP2B 3'UTR 0.14 TCGA-D8-A1XQ-01 2 73679886 73679886 C T ALMS1 Missense_Mutation p.P2077S 0.26 benign(0.042) TCGA-D8-A1XQ-01 2 74042414 74042414 A - C2orf78 Frame_Shift_Del p.N357Mfs*17 0.13 TCGA-D8-A1XQ-01 2 74333020 74333020 G A TET3 3'UTR 0.14 TCGA-D8-A1XQ-01 2 74590153 74590153 G A DCTN1 Missense_Mutation p.T1166M 0.12 tolerated(0.11) benign(0.004) TCGA-D8-A1XQ-01 2 75105812 75105812 C T HK2 Intron 0.33 TCGA-D8-A1XQ-01 2 79347986 79347986 G A REG1A 5'UTR 0.11 TCGA-D8-A1XQ-01 2 80530409 80530409 C T LRRTM1 Missense_Mutation p.R179H 0.13 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XQ-01 2 85066304 85066304 A G TRABD2A Silent p.P271P 0.11 TCGA-D8-A1XQ-01 2 85848613 85848613 T C USP39 Missense_Mutation p.V115A 0.10 tolerated(0.07) benign(0.056) TCGA-D8-A1XQ-01 2 85866465 85866465 A G USP39 Missense_Mutation p.Q412R 0.12 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 2 89953096 89953096 C A IGKV1D-33 Missense_Mutation p.S31Y 0.10 deleterious(0) benign(0.312) TCGA-D8-A1XQ-01 2 9546974 9546974 C T ITGB1BP1 Missense_Mutation p.E198K 0.12 tolerated(0.25) possibly_damaging(0.524) TCGA-D8-A1XQ-01 2 96970585 96970585 C T SNRNP200 Missense_Mutation p.A23T 0.14 tolerated(0.18) benign(0.098) TCGA-D8-A1XQ-01 2 97019119 97019119 G A NCAPH Missense_Mutation p.S329N 0.12 tolerated(0.15) benign(0.033) TCGA-D8-A1XQ-01 2 97365797 97365797 A C FER1L5 RNA 0.16 TCGA-D8-A1XQ-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.14 TCGA-D8-A1XQ-01 2 99253041 99253041 C T MGAT4A Missense_Mutation p.G447D 0.12 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 2 99722087 99722087 T G TSGA10 Missense_Mutation p.H95P 0.13 deleterious(0.01) benign(0.131) TCGA-D8-A1XQ-01 3 10018676 10018677 - T EMC3 Frame_Shift_Ins p.T91Nfs*2 0.13 TCGA-D8-A1XQ-01 3 101484323 101484323 T C CEP97 Silent p.N842N 0.19 TCGA-D8-A1XQ-01 3 10302031 10302031 C T TATDN2 Missense_Mutation p.R209W 0.59 deleterious(0.01) possibly_damaging(0.696) TCGA-D8-A1XQ-01 3 108273229 108273229 T C KIAA1524 Missense_Mutation p.N773S 0.06 deleterious(0.02) possibly_damaging(0.839) TCGA-D8-A1XQ-01 3 109033388 109033388 A T DPPA2 Translation_Start_Site p.M1? 0.11 deleterious(0) benign(0.161) TCGA-D8-A1XQ-01 3 113146122 113146122 T C WDR52 Silent p.E55E 0.10 TCGA-D8-A1XQ-01 3 11383701 11383701 G A ATG7 Missense_Mutation p.C358Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XQ-01 3 113955049 113955049 A G ZNF80 3'UTR 0.15 TCGA-D8-A1XQ-01 3 119434642 119434642 G A MAATS1 Intron 0.20 TCGA-D8-A1XQ-01 3 119451169 119451169 G C MAATS1 Missense_Mutation p.K349N 0.19 deleterious(0.05) benign(0.078) TCGA-D8-A1XQ-01 3 120347339 120347339 G A HGD Missense_Mutation p.T409I 0.23 deleterious(0) probably_damaging(0.989) TCGA-D8-A1XQ-01 3 122296641 122296641 C T PARP15 Silent p.L43L 0.23 TCGA-D8-A1XQ-01 3 122459274 122459274 G A HSPBAP1 Missense_Mutation p.T462M 0.16 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XQ-01 3 125313607 125313607 G T OSBPL11 Nonsense_Mutation p.S13* 0.26 TCGA-D8-A1XQ-01 3 12653446 12653446 T A RAF1 Intron 0.17 TCGA-D8-A1XQ-01 3 130110138 130110138 G C COL6A5 Missense_Mutation p.D845H 0.11 deleterious(0.02) benign(0.335) TCGA-D8-A1XQ-01 3 132086814 132086814 G A ACPP 3'UTR 0.18 TCGA-D8-A1XQ-01 3 132423108 132423108 A G NPHP3 Silent p.D486D 0.08 TCGA-D8-A1XQ-01 3 1339605 1339605 G C CNTN6 Missense_Mutation p.V231L 0.30 deleterious(0.05) possibly_damaging(0.582) TCGA-D8-A1XQ-01 3 134851765 134851765 G A EPHB1 Missense_Mutation p.V391I 0.13 tolerated(0.06) benign(0.358) TCGA-D8-A1XQ-01 3 134977954 134977954 A T EPHB1 Missense_Mutation p.M983L 0.25 tolerated_low_confidence(0.61) benign(0.001) TCGA-D8-A1XQ-01 3 135721144 135721144 T C PPP2R3A Silent p.N268N 0.32 TCGA-D8-A1XQ-01 3 137483947 137483947 G A SOX14 Silent p.A107A 0.12 TCGA-D8-A1XQ-01 3 142103488 142103488 A C XRN1 Silent p.S793S 0.09 TCGA-D8-A1XQ-01 3 142754861 142754861 G - U2SURP Frame_Shift_Del p.A661Qfs*8 0.31 TCGA-D8-A1XQ-01 3 148459202 148459202 A G AGTR1 Missense_Mutation p.Y127C 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 3 148789037 148789037 A G HLTF Splice_Site p.X298_splice 0.11 TCGA-D8-A1XQ-01 3 151055559 151055559 G A P2RY12 3'UTR 0.36 TCGA-D8-A1XQ-01 3 151154686 151154686 C A IGSF10 Missense_Mutation p.V2555F 0.10 deleterious(0) probably_damaging(0.952) TCGA-D8-A1XQ-01 3 151165784 151165784 A G IGSF10 Missense_Mutation p.V662A 0.69 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 3 154055481 154055481 A G GPR149 3'UTR 0.09 TCGA-D8-A1XQ-01 3 156175252 156175252 G C KCNAB1 Missense_Mutation p.R123P 0.11 deleterious(0.04) benign(0.362) TCGA-D8-A1XQ-01 3 159998525 159998525 A G IFT80 Missense_Mutation p.W532R 0.05 deleterious(0) possibly_damaging(0.866) TCGA-D8-A1XQ-01 3 164741426 164741426 G A SI Missense_Mutation p.P1011S 0.09 tolerated(0.06) benign(0.315) TCGA-D8-A1XQ-01 3 16633620 16633620 A T DAZL Silent p.S277S 0.10 TCGA-D8-A1XQ-01 3 183823746 183823746 C - HTR3E Frame_Shift_Del p.L333Sfs*12 0.08 TCGA-D8-A1XQ-01 3 184557790 184557790 C G VPS8 Intron 0.53 TCGA-D8-A1XQ-01 3 185407323 185407323 G - IGF2BP2 Frame_Shift_Del p.P166Lfs*49 0.12 TCGA-D8-A1XQ-01 3 185929630 185929630 G C DGKG Missense_Mutation p.T624S 0.06 tolerated(0.17) probably_damaging(0.999) TCGA-D8-A1XQ-01 3 189689712 189689712 T G LEPREL1 Missense_Mutation p.K595T 0.10 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 3 190106188 190106188 A T CLDN16 Missense_Mutation p.T94S 0.09 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XQ-01 3 194126757 194126757 G A ATP13A3 Missense_Mutation p.A1191V 0.10 tolerated(0.13) possibly_damaging(0.815) TCGA-D8-A1XQ-01 3 194168627 194168627 G A ATP13A3 Missense_Mutation p.A421V 0.07 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XQ-01 3 19491706 19491706 G A KCNH8 Missense_Mutation p.R495H 0.15 deleterious(0.01) possibly_damaging(0.804) TCGA-D8-A1XQ-01 3 195515710 195515710 C T MUC4 Missense_Mutation p.R914K 0.08 unknown(0) TCGA-D8-A1XQ-01 3 196202171 196202171 C T RNF168 Silent p.P231P 0.04 TCGA-D8-A1XQ-01 3 196214301 196214301 T C RNF168 Missense_Mutation p.E176G 0.08 deleterious(0) probably_damaging(0.979) TCGA-D8-A1XQ-01 3 196304643 196304643 G A FBXO45 Missense_Mutation p.G213D 0.05 tolerated(0.06) probably_damaging(0.918) TCGA-D8-A1XQ-01 3 196613069 196613069 T C SENP5 Silent p.S339S 0.05 TCGA-D8-A1XQ-01 3 33863451 33863451 T C PDCD6IP Silent p.L113L 0.16 TCGA-D8-A1XQ-01 3 38022467 38022467 A G CTDSPL 3'UTR 0.11 TCGA-D8-A1XQ-01 3 38149073 38149073 A G DLEC1 Splice_Site p.X955_splice 0.09 TCGA-D8-A1XQ-01 3 38592012 38592012 C T SCN5A Missense_Mutation p.V1951M 0.10 tolerated(1) benign(0.001) TCGA-D8-A1XQ-01 3 38739930 38739930 C T SCN10A Missense_Mutation p.R1594H 0.08 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 3 38938500 38938500 G A SCN11A Missense_Mutation p.R747W 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1XQ-01 3 38991723 38991723 G T SCN11A Missense_Mutation p.T44K 0.59 tolerated(0.99) benign(0.007) TCGA-D8-A1XQ-01 3 39174533 39174533 G A TTC21A Intron 0.12 TCGA-D8-A1XQ-01 3 39323176 39323176 G A CX3CR1 Missense_Mutation p.P4L 0.12 unknown(0) TCGA-D8-A1XQ-01 3 42166958 42166958 G A TRAK1 Silent p.L46L 0.13 TCGA-D8-A1XQ-01 3 42567418 42567418 C T VIPR1 Missense_Mutation p.T111M 0.11 deleterious(0.01) benign(0.149) TCGA-D8-A1XQ-01 3 44890031 44890031 A C KIF15 Missense_Mutation p.M1263L 0.12 tolerated(0.71) benign(0.002) TCGA-D8-A1XQ-01 3 46245605 46245605 T - CCR1 Frame_Shift_Del p.N67Tfs*2 0.13 TCGA-D8-A1XQ-01 3 46783985 46783996 GCCTTCACGCAG - PRSS45 In_Frame_Del p.C178_A181del 0.12 TCGA-D8-A1XQ-01 3 47814349 47814349 G T SMARCC1 Silent p.A91A 0.11 TCGA-D8-A1XQ-01 3 48282626 48282626 C T ZNF589 5'UTR 0.20 TCGA-D8-A1XQ-01 3 48696383 48696383 G A CELSR3 Nonsense_Mutation p.R1229* 0.21 TCGA-D8-A1XQ-01 3 49282178 49282178 A G CCDC36 Intron 0.15 TCGA-D8-A1XQ-01 3 49313959 49313959 C T C3orf62 Missense_Mutation p.S116N 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-D8-A1XQ-01 3 49695441 49695441 A G BSN Missense_Mutation p.N2818D 0.19 unknown(0) TCGA-D8-A1XQ-01 3 49850974 49850974 C A UBA7 Missense_Mutation p.G55C 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 3 50396186 50396186 T C TMEM115 Silent p.S103S 0.22 TCGA-D8-A1XQ-01 3 50403245 50403245 C T CACNA2D2 Missense_Mutation p.A978T 0.14 tolerated(0.09) benign(0.085) TCGA-D8-A1XQ-01 3 51995174 51995174 A G PCBP4 Splice_Site p.X27_splice 0.08 TCGA-D8-A1XQ-01 3 52238804 52238804 C G ALAS1 Missense_Mutation p.R225G 0.37 tolerated(0.33) benign(0.153) TCGA-D8-A1XQ-01 3 52954619 52954619 C G SFMBT1 Missense_Mutation p.D436H 0.09 deleterious(0.01) benign(0.023) TCGA-D8-A1XQ-01 3 54537654 54537654 C A CACNA2D3 Missense_Mutation p.Q173K 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-D8-A1XQ-01 3 58279470 58279472 ACA - ABHD6 In_Frame_Del p.N333del 0.31 TCGA-D8-A1XQ-01 3 62240892 62240892 T C PTPRG Splice_Site p.X853_splice 0.21 TCGA-D8-A1XQ-01 3 63466556 63466556 C T SYNPR Silent p.L45L 0.11 TCGA-D8-A1XQ-01 3 72842170 72842170 T C SHQ1 Missense_Mutation p.K360E 0.08 deleterious(0) probably_damaging(0.988) TCGA-D8-A1XQ-01 3 99514813 99514813 G A COL8A1 Missense_Mutation p.D690N 0.20 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 3 9976279 9976279 G C CRELD1 Missense_Mutation p.V53L 0.13 tolerated(0.08) probably_damaging(0.923) TCGA-D8-A1XQ-01 4 113362145 113362145 T G ALPK1 Missense_Mutation p.V1204G 0.23 tolerated(0.38) benign(0) TCGA-D8-A1XQ-01 4 114278752 114278752 T G ANK2 Missense_Mutation p.I2993R 0.19 benign(0.078) TCGA-D8-A1XQ-01 4 123283427 123283427 A G KIAA1109 3'UTR 0.35 TCGA-D8-A1XQ-01 4 1343345 1343345 C T UVSSA Silent p.R44R 0.34 TCGA-D8-A1XQ-01 4 144481154 144481154 C T SMARCA5 3'Flank 0.35 TCGA-D8-A1XQ-01 4 147104070 147104071 - A LSM6 5'UTR p.M1? 0.09 TCGA-D8-A1XQ-01 4 16165061 16165061 T C TAPT1 Missense_Mutation p.Q525R 0.19 tolerated(0.19) benign(0.115) TCGA-D8-A1XQ-01 4 16258161 16258161 G T TAPT1-AS1 RNA 0.43 TCGA-D8-A1XQ-01 4 166914018 166914018 A G TLL1 Missense_Mutation p.I115V 0.24 tolerated(0.32) benign(0.005) TCGA-D8-A1XQ-01 4 1720159 1720159 G A TMEM129 Missense_Mutation p.P134S 0.08 tolerated(0.13) benign(0.023) TCGA-D8-A1XQ-01 4 173961139 173961141 AGA - GALNTL6 In_Frame_Del p.K567del 0.26 TCGA-D8-A1XQ-01 4 174295094 174295094 A T SAP30 Missense_Mutation p.D149V 0.25 deleterious(0) possibly_damaging(0.686) TCGA-D8-A1XQ-01 4 17493943 17493943 C T QDPR Missense_Mutation p.A153T 0.25 tolerated(0.1) possibly_damaging(0.53) TCGA-D8-A1XQ-01 4 184203902 184203902 A - WWC2 Frame_Shift_Del p.E911Rfs*16 0.23 TCGA-D8-A1XQ-01 4 1988049 1988049 T C NELFA Missense_Mutation p.T250A 0.12 tolerated(0.06) benign(0.047) TCGA-D8-A1XQ-01 4 20729003 20729003 A T PACRGL 3'UTR 0.19 TCGA-D8-A1XQ-01 4 22394213 22394213 C T GPR125 Missense_Mutation p.C861Y 0.22 tolerated(1) benign(0.03) TCGA-D8-A1XQ-01 4 25390191 25390191 A - ANAPC4 Frame_Shift_Del p.N148Tfs*67 0.16 TCGA-D8-A1XQ-01 4 2746574 2746574 G A TNIP2 Silent p.H252H 0.53 TCGA-D8-A1XQ-01 4 37863441 37863441 A C PGM2 3'UTR 0.47 TCGA-D8-A1XQ-01 4 38798998 38798998 T C TLR1 Silent p.G485G 0.15 TCGA-D8-A1XQ-01 4 38828952 38828952 C T TLR6 Missense_Mutation p.E715K 0.18 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 4 420895 420895 A G ABCA11P Intron 0.32 TCGA-D8-A1XQ-01 4 44638017 44638018 - A YIPF7 Frame_Shift_Ins p.Q92Sfs*16 0.23 TCGA-D8-A1XQ-01 4 47676508 47676508 G C CORIN Nonsense_Mutation p.S420* 0.16 TCGA-D8-A1XQ-01 4 48424070 48424070 C T SLAIN2 Silent p.D574D 0.17 TCGA-D8-A1XQ-01 4 55161392 55161392 G A PDGFRA Missense_Mutation p.D1075N 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-D8-A1XQ-01 4 56858137 56858137 T C CEP135 Missense_Mutation p.L632S 0.10 tolerated(0.85) benign(0.005) TCGA-D8-A1XQ-01 4 57182678 57182678 T C KIAA1211 Missense_Mutation p.S1004P 0.13 tolerated(0.33) possibly_damaging(0.504) TCGA-D8-A1XQ-01 4 5966750 5966750 C A C4orf50 Splice_Site p.X667_splice 0.45 TCGA-D8-A1XQ-01 4 68812185 68812185 A G TMPRSS11A Missense_Mutation p.V39A 0.12 tolerated(0.42) benign(0.004) TCGA-D8-A1XQ-01 4 70513359 70513359 A G UGT2A1 Silent p.L2L 0.17 TCGA-D8-A1XQ-01 4 71066271 71066271 G A ODAM Missense_Mutation p.V161I 0.14 tolerated(0.25) benign(0.047) TCGA-D8-A1XQ-01 4 71508990 71508990 G A ENAM Missense_Mutation p.R616K 0.16 tolerated(0.31) benign(0.347) TCGA-D8-A1XQ-01 4 72618233 72618233 A G GC Splice_Site p.X484_splice 0.08 TCGA-D8-A1XQ-01 4 74270073 74270073 T A ALB Missense_Mutation p.L10H 0.16 deleterious(0) possibly_damaging(0.853) TCGA-D8-A1XQ-01 4 74285987 74285987 C T ALB Missense_Mutation p.A601V 0.15 tolerated(0.53) benign(0.002) TCGA-D8-A1XQ-01 4 74719799 74719799 T C PF4V1 Missense_Mutation p.L92P 0.17 tolerated(1) benign(0.003) TCGA-D8-A1XQ-01 4 84026141 84026141 C T PLAC8 Missense_Mutation p.G51R 0.31 deleterious(0.01) possibly_damaging(0.873) TCGA-D8-A1XQ-01 5 108691698 108691698 C T PJA2 Missense_Mutation p.G561E 0.22 deleterious(0.02) probably_damaging(0.978) TCGA-D8-A1XQ-01 5 109117120 109117120 T - MAN2A1 Frame_Shift_Del p.F468Lfs*22 0.22 TCGA-D8-A1XQ-01 5 115318986 115318986 C G AQPEP Missense_Mutation p.A233G 0.13 tolerated(0.09) benign(0.048) TCGA-D8-A1XQ-01 5 118465026 118465026 T - DMXL1 Frame_Shift_Del p.L410Yfs*17 0.17 TCGA-D8-A1XQ-01 5 126705651 126705651 C A MEGF10 Silent p.T123T 0.16 TCGA-D8-A1XQ-01 5 135276459 135276459 G A FBXL21 RNA 0.16 TCGA-D8-A1XQ-01 5 139231232 139231232 G A NRG2 Missense_Mutation p.H577Y 0.31 tolerated(0.06) possibly_damaging(0.745) TCGA-D8-A1XQ-01 5 140187923 140187923 T C PCDHA4 Missense_Mutation p.L384P 0.24 deleterious_low_confidence(0) benign(0.012) TCGA-D8-A1XQ-01 5 140222530 140222530 G A PCDHA8 Missense_Mutation p.V542M 0.29 deleterious_low_confidence(0.02) benign(0.366) TCGA-D8-A1XQ-01 5 140432384 140432384 C T PCDHB1 Silent p.S443S 0.18 TCGA-D8-A1XQ-01 5 140559922 140559922 A G PCDHB8 Silent p.K769K 0.19 TCGA-D8-A1XQ-01 5 140572988 140572988 T C PCDHB10 Missense_Mutation p.I288T 0.19 deleterious_low_confidence(0.04) benign(0.091) TCGA-D8-A1XQ-01 5 140731960 140731960 G A PCDHGB1 Silent p.L711L 0.16 TCGA-D8-A1XQ-01 5 140740933 140740933 G T PCDHGB2 Missense_Mutation p.D411Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 5 140744575 140744575 G A PCDHGA5 Silent p.T226T 0.18 TCGA-D8-A1XQ-01 5 140812003 140812003 G A PCDHGA12 Silent p.A559A 0.23 TCGA-D8-A1XQ-01 5 146780284 146780284 G A DPYSL3 Missense_Mutation p.R475W 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 5 150175154 150175154 G A SMIM3 Missense_Mutation p.R51Q 0.29 tolerated_low_confidence(0.29) possibly_damaging(0.764) TCGA-D8-A1XQ-01 5 154308089 154308089 A C GEMIN5 Missense_Mutation p.F304L 0.16 deleterious(0.03) benign(0.005) TCGA-D8-A1XQ-01 5 159912413 159912413 G A MIR146A RNA 0.08 TCGA-D8-A1XQ-01 5 167645722 167645722 T G TENM2 Missense_Mutation p.V1609G 0.30 deleterious(0.02) possibly_damaging(0.597) TCGA-D8-A1XQ-01 5 176814816 176814816 T C SLC34A1 Missense_Mutation p.S196P 0.26 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XQ-01 5 176885610 176885610 C T DBN1 Missense_Mutation p.A411T 0.42 tolerated(0.16) benign(0.075) TCGA-D8-A1XQ-01 5 179996273 179996273 T C CNOT6 Silent p.S397S 0.21 TCGA-D8-A1XQ-01 5 180001174 180001174 G A CNOT6 Missense_Mutation p.G550S 0.28 tolerated(0.1) probably_damaging(0.988) TCGA-D8-A1XQ-01 5 24535881 24535881 C T CDH10 Missense_Mutation p.G193R 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1XQ-01 5 32010450 32010450 G A PDZD2 Silent p.E423E 0.18 TCGA-D8-A1XQ-01 5 480128 480128 G A SLC9A3 Intron 0.56 TCGA-D8-A1XQ-01 5 63257254 63257254 A C HTR1A Missense_Mutation p.V98G 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 5 65374370 65374370 A - ERBB2IP 3'UTR 0.29 TCGA-D8-A1XQ-01 5 67592114 67592114 G A PIK3R1 Missense_Mutation p.G644S 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 5 70308556 70308556 T - NAIP Frame_Shift_Del p.R63Gfs*2 0.18 TCGA-D8-A1XQ-01 5 76028611 76028611 C T F2R Silent p.Y187Y 0.20 TCGA-D8-A1XQ-01 5 79855425 79855427 AAG - ANKRD34B In_Frame_Del p.L138del 0.17 TCGA-D8-A1XQ-01 5 89939710 89939710 A - GPR98 Frame_Shift_Del p.N883Mfs*8 0.24 TCGA-D8-A1XQ-01 6 101296432 101296432 A G ASCC3 Silent p.C131C 0.09 TCGA-D8-A1XQ-01 6 105239507 105239507 G C HACE1 Missense_Mutation p.Q316E 0.67 tolerated(0.2) benign(0.027) TCGA-D8-A1XQ-01 6 106968729 106968729 A G AIM1 Missense_Mutation p.M808V 0.57 tolerated(0.32) benign(0) TCGA-D8-A1XQ-01 6 106968796 106968796 A - AIM1 Frame_Shift_Del p.S832Vfs*21 0.12 TCGA-D8-A1XQ-01 6 117128233 117128233 C T GPRC6A Missense_Mutation p.G212D 0.09 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XQ-01 6 117900219 117900219 C G GOPC Missense_Mutation p.L98F 0.11 tolerated(0.06) possibly_damaging(0.566) TCGA-D8-A1XQ-01 6 119628074 119628074 T C MAN1A1 Silent p.S229S 0.14 TCGA-D8-A1XQ-01 6 12120473 12120473 G A HIVEP1 Missense_Mutation p.E149K 0.08 deleterious(0.05) possibly_damaging(0.852) TCGA-D8-A1XQ-01 6 126307723 126307723 G A TRMT11 Silent p.R9R 0.10 TCGA-D8-A1XQ-01 6 138599672 138599672 C T KIAA1244 Missense_Mutation p.A738V 0.16 tolerated(0.11) benign(0.097) TCGA-D8-A1XQ-01 6 147631307 147631307 T C STXBP5 Silent p.T335T 0.10 TCGA-D8-A1XQ-01 6 152532698 152532698 C T SYNE1 Missense_Mutation p.R7507H 0.15 possibly_damaging(0.816) TCGA-D8-A1XQ-01 6 1611053 1611053 A G FOXC1 Missense_Mutation p.S125G 0.41 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XQ-01 6 16326992 16326992 G A ATXN1 Missense_Mutation p.A517V 0.08 tolerated(0.09) benign(0.146) TCGA-D8-A1XQ-01 6 168363322 168363322 G A MLLT4 3'UTR 0.25 TCGA-D8-A1XQ-01 6 25727450 25727450 C T HIST1H2BA Missense_Mutation p.P105L 0.11 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-D8-A1XQ-01 6 27833136 27833136 T A HIST1H2AL Missense_Mutation p.S2T 0.29 tolerated_low_confidence(0.08) benign(0.184) TCGA-D8-A1XQ-01 6 27840981 27840981 C T HIST1H4L Missense_Mutation p.G103D 0.09 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-D8-A1XQ-01 6 2840716 2840716 A C SERPINB1 Missense_Mutation p.I35M 0.16 deleterious(0.02) possibly_damaging(0.646) TCGA-D8-A1XQ-01 6 29054990 29054990 A G OR2B3 Silent p.F12F 0.13 TCGA-D8-A1XQ-01 6 29455184 29455184 C T MAS1L Missense_Mutation p.A166T 0.12 deleterious(0.05) probably_damaging(0.93) TCGA-D8-A1XQ-01 6 30557688 30557688 A G ABCF1 Missense_Mutation p.K724E 0.17 deleterious(0.02) possibly_damaging(0.771) TCGA-D8-A1XQ-01 6 31237303 31237303 C A HLA-C Splice_Site p.X339_splice 0.13 TCGA-D8-A1XQ-01 6 31895870 31895870 G A CFB Missense_Mutation p.R62Q 0.09 deleterious(0.02) benign(0.011) TCGA-D8-A1XQ-01 6 31934615 31934615 G C SKIV2L Missense_Mutation p.D778H 0.07 tolerated(0.17) benign(0.377) TCGA-D8-A1XQ-01 6 31937374 31937374 G A SKIV2L Missense_Mutation p.R1208H 0.22 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XQ-01 6 35212434 35212434 C T SCUBE3 Silent p.C749C 0.08 TCGA-D8-A1XQ-01 6 35261543 35261543 G C ZNF76 Missense_Mutation p.E449Q 0.17 tolerated(0.28) possibly_damaging(0.717) TCGA-D8-A1XQ-01 6 35473918 35473918 C T TULP1 Silent p.E287E 0.12 TCGA-D8-A1XQ-01 6 36291118 36291119 - A C6orf222 Frame_Shift_Ins p.L475Sfs*17 0.15 TCGA-D8-A1XQ-01 6 37344772 37344772 A G RNF8 Missense_Mutation p.E400G 0.05 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 6 38828235 38828235 A - DNAH8 Frame_Shift_Del p.M1772Cfs*12 0.11 TCGA-D8-A1XQ-01 6 39866693 39866693 G A DAAM2 Missense_Mutation p.G887S 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 6 39895248 39895248 A G MOCS1 Missense_Mutation p.S24P 0.08 tolerated(0.1) benign(0.212) TCGA-D8-A1XQ-01 6 43096826 43096826 A G PTK7 Missense_Mutation p.Y72C 0.06 tolerated(0.18) possibly_damaging(0.617) TCGA-D8-A1XQ-01 6 43172796 43172796 T C CUL9 Silent p.A1525A 0.15 TCGA-D8-A1XQ-01 6 43399797 43399797 T G ABCC10 Intron 0.10 TCGA-D8-A1XQ-01 6 43403588 43403588 C T ABCC10 Missense_Mutation p.R570W 0.15 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XQ-01 6 43471369 43471369 C T TJAP1 Silent p.Y168Y 0.13 TCGA-D8-A1XQ-01 6 43484867 43484867 T C POLR1C Missense_Mutation p.V7A 0.05 tolerated(0.16) benign(0.027) TCGA-D8-A1XQ-01 6 43516152 43516152 T G XPO5 Missense_Mutation p.N636H 0.07 deleterious(0.02) benign(0.281) TCGA-D8-A1XQ-01 6 45909369 45909369 T C CLIC5 Silent p.K266K 0.07 TCGA-D8-A1XQ-01 6 46658417 46658417 T A TDRD6 Missense_Mutation p.F851Y 0.12 tolerated(0.82) possibly_damaging(0.557) TCGA-D8-A1XQ-01 6 51900493 51900493 A G PKHD1 Missense_Mutation p.S1042P 0.12 deleterious(0.05) probably_damaging(0.962) TCGA-D8-A1XQ-01 6 54805054 54805054 T C FAM83B Missense_Mutation p.S429P 0.21 tolerated(0.19) benign(0.265) TCGA-D8-A1XQ-01 6 54805055 54805055 C A FAM83B Nonsense_Mutation p.S429* 0.21 TCGA-D8-A1XQ-01 6 55925688 55925688 C T COL21A1 Splice_Site p.X784_splice 0.16 TCGA-D8-A1XQ-01 6 56473919 56473919 T C DST Intron 0.12 TCGA-D8-A1XQ-01 6 56716195 56716195 C A RP11-472M19.2 Intron 0.08 TCGA-D8-A1XQ-01 6 62390775 62390775 A - KHDRBS2 3'UTR 0.08 TCGA-D8-A1XQ-01 6 65149088 65149088 A - EYS Frame_Shift_Del p.F1934Lfs*11 0.08 TCGA-D8-A1XQ-01 6 70859922 70859922 C - COL19A1 Frame_Shift_Del p.P676Qfs*31 0.18 TCGA-D8-A1XQ-01 6 71508378 71508378 A C SMAP1 Missense_Mutation p.K172Q 0.47 tolerated(0.11) benign(0.015) TCGA-D8-A1XQ-01 6 7230420 7230420 G C RREB1 Missense_Mutation p.E696D 0.10 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 6 7404737 7404737 T C RIOK1 Missense_Mutation p.M314T 0.07 deleterious(0) probably_damaging(0.924) TCGA-D8-A1XQ-01 6 90377860 90377860 A G MDN1 Missense_Mutation p.L4656S 0.11 probably_damaging(0.995) TCGA-D8-A1XQ-01 6 97626347 97626347 G C MMS22L Missense_Mutation p.P884R 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XQ-01 7 100453404 100453404 C A SLC12A9 Silent p.G131G 0.20 TCGA-D8-A1XQ-01 7 100681430 100681430 G A MUC17 Missense_Mutation p.V2245I 0.15 unknown(0) TCGA-D8-A1XQ-01 7 100682280 100682280 C T MUC17 Missense_Mutation p.A2528V 0.06 benign(0.163) TCGA-D8-A1XQ-01 7 103019728 103019728 C T SLC26A5 Missense_Mutation p.A547T 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-D8-A1XQ-01 7 103179657 103179657 T C RELN Missense_Mutation p.T2350A 0.09 tolerated(0.46) benign(0) TCGA-D8-A1XQ-01 7 107115791 107115791 A G GPR22 Missense_Mutation p.Q429R 0.21 tolerated_low_confidence(0.46) benign(0.001) TCGA-D8-A1XQ-01 7 117368307 117368307 C T CTTNBP2 Silent p.A1297A 0.17 TCGA-D8-A1XQ-01 7 117375131 117375131 A G CTTNBP2 Missense_Mutation p.Y1238H 0.17 tolerated(0.34) possibly_damaging(0.841) TCGA-D8-A1XQ-01 7 123332759 123332759 G T WASL Missense_Mutation p.P330Q 0.19 tolerated(0.63) unknown(0) TCGA-D8-A1XQ-01 7 129821553 129821553 T C TMEM209 Missense_Mutation p.N344D 0.21 tolerated(0.06) benign(0.122) TCGA-D8-A1XQ-01 7 131866334 131866334 C A PLXNA4 Missense_Mutation p.A1100S 0.10 tolerated(1) benign(0.124) TCGA-D8-A1XQ-01 7 138418883 138418883 G A ATP6V0A4 Silent p.H563H 0.21 TCGA-D8-A1XQ-01 7 138967905 138967905 C A UBN2 Missense_Mutation p.L752I 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-D8-A1XQ-01 7 141618962 141618962 C G OR9A4 Missense_Mutation p.A96G 0.26 tolerated(1) benign(0.001) TCGA-D8-A1XQ-01 7 142104368 142104368 T C TRBV6-9 Missense_Mutation p.K33E 0.19 tolerated(0.81) benign(0.005) TCGA-D8-A1XQ-01 7 142567573 142567573 C G EPHB6 Missense_Mutation p.P821A 0.22 tolerated(0.18) benign(0.016) TCGA-D8-A1XQ-01 7 143826923 143826923 T C OR2A14 Missense_Mutation p.C240R 0.15 deleterious(0) probably_damaging(0.958) TCGA-D8-A1XQ-01 7 148525867 148525868 TC - EZH2 Frame_Shift_Del p.E197Rfs*12 0.15 TCGA-D8-A1XQ-01 7 149416639 149416639 G A KRBA1 5'UTR 0.20 TCGA-D8-A1XQ-01 7 150732718 150732718 G T ABCB8 Missense_Mutation p.M272I 0.15 tolerated(0.39) benign(0.003) TCGA-D8-A1XQ-01 7 1527075 1527075 G - INTS1 Frame_Shift_Del p.R843Gfs*11 0.45 TCGA-D8-A1XQ-01 7 20668355 20668355 T C ABCB5 Silent p.G51G 0.16 TCGA-D8-A1XQ-01 7 22162076 22162076 T G RAPGEF5 Missense_Mutation p.D714A 0.48 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 7 25266578 25266578 T - NPVF Frame_Shift_Del p.N69Mfs*5 0.23 TCGA-D8-A1XQ-01 7 30795207 30795207 G A INMT Missense_Mutation p.A178T 0.19 tolerated(0.22) benign(0.044) TCGA-D8-A1XQ-01 7 39504229 39504229 C G POU6F2 Missense_Mutation p.P674A 0.17 tolerated_low_confidence(1) unknown(0) TCGA-D8-A1XQ-01 7 40027228 40027228 G A CDK13 Silent p.P414P 0.24 TCGA-D8-A1XQ-01 7 42007203 42007203 T G GLI3 Missense_Mutation p.I808L 0.24 tolerated(0.55) benign(0.021) TCGA-D8-A1XQ-01 7 6026963 6026963 C G PMS2 Missense_Mutation p.S478T 0.68 tolerated(0.6) benign(0.002) TCGA-D8-A1XQ-01 7 63505920 63505920 A G ZNF727 5'UTR 0.22 TCGA-D8-A1XQ-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.22 TCGA-D8-A1XQ-01 7 83823823 83823823 T C SEMA3A Missense_Mutation p.N27S 0.15 tolerated(0.97) benign(0) TCGA-D8-A1XQ-01 7 89866027 89866027 T - STEAP2 3'UTR 0.29 TCGA-D8-A1XQ-01 7 90741992 90741992 C T CDK14 Silent p.T412T 0.17 TCGA-D8-A1XQ-01 7 91793084 91793084 T C LRRD1 Missense_Mutation p.Y478C 0.18 tolerated(0.1) possibly_damaging(0.706) TCGA-D8-A1XQ-01 7 93516141 93516141 C T TFPI2 Silent p.K233K 0.12 TCGA-D8-A1XQ-01 7 94935634 94935634 T C PON1 Missense_Mutation p.Y248C 0.18 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XQ-01 7 95665026 95665026 T C DYNC1I1 Silent p.S459S 0.20 TCGA-D8-A1XQ-01 7 97858423 97858423 C T TECPR1 Missense_Mutation p.V780M 0.19 deleterious(0) possibly_damaging(0.803) TCGA-D8-A1XQ-01 7 98524910 98524910 G T TRRAP Missense_Mutation p.K1032N 0.15 benign(0.347) TCGA-D8-A1XQ-01 7 99769785 99769785 C T GPC2 Silent p.T316T 0.16 TCGA-D8-A1XQ-01 8 101276912 101276912 A G RNF19A Silent p.A431A 0.09 TCGA-D8-A1XQ-01 8 104080908 104080908 T C ATP6V1C1 Missense_Mutation p.L361P 0.09 deleterious(0) probably_damaging(0.948) TCGA-D8-A1XQ-01 8 104417075 104417075 T C SLC25A32 Missense_Mutation p.K107R 0.06 deleterious(0.03) probably_damaging(1) TCGA-D8-A1XQ-01 8 105436483 105436483 T C DPYS Silent p.K409K 0.08 TCGA-D8-A1XQ-01 8 108334260 108334260 A G ANGPT1 Silent p.T224T 0.08 TCGA-D8-A1XQ-01 8 110308628 110308628 A G NUDCD1 Silent p.A148A 0.09 TCGA-D8-A1XQ-01 8 110598295 110598297 GAA - SYBU In_Frame_Del p.S175del 0.11 TCGA-D8-A1XQ-01 8 118147485 118147485 A G SLC30A8 5'Flank 0.08 TCGA-D8-A1XQ-01 8 121528318 121528318 G A MTBP Silent p.S711S 0.12 TCGA-D8-A1XQ-01 8 121530983 121530983 A G MTBP Missense_Mutation p.S846G 0.05 tolerated(1) benign(0.016) TCGA-D8-A1XQ-01 8 124358466 124358466 C T ATAD2 Missense_Mutation p.V798I 0.04 tolerated(0.28) benign(0.029) TCGA-D8-A1XQ-01 8 124371894 124371894 A G ATAD2 Silent p.L397L 0.07 TCGA-D8-A1XQ-01 8 124797324 124797324 G A FAM91A1 Missense_Mutation p.A272T 0.07 deleterious(0) probably_damaging(0.982) TCGA-D8-A1XQ-01 8 125058081 125058081 T C FER1L6 Missense_Mutation p.V888A 0.06 tolerated(1) benign(0.004) TCGA-D8-A1XQ-01 8 125989479 125989479 A G ZNF572 Silent p.T323T 0.11 TCGA-D8-A1XQ-01 8 125989692 125989692 C T ZNF572 Silent p.G394G 0.05 TCGA-D8-A1XQ-01 8 131104288 131104288 T C ASAP1 Missense_Mutation p.K835E 0.10 deleterious(0.04) probably_damaging(0.971) TCGA-D8-A1XQ-01 8 131193126 131193126 A G ASAP1 Silent p.F177F 0.08 TCGA-D8-A1XQ-01 8 132957113 132957113 G A EFR3A Missense_Mutation p.R70H 0.09 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 8 133595966 133595966 T G LRRC6 Silent p.R401R 0.04 TCGA-D8-A1XQ-01 8 133910445 133910445 G T TG Silent p.G1057G 0.18 TCGA-D8-A1XQ-01 8 139601554 139601554 G A COL22A1 Missense_Mutation p.S1608F 0.07 unknown(0) TCGA-D8-A1XQ-01 8 139642977 139642977 A G COL22A1 Silent p.I1208I 0.05 TCGA-D8-A1XQ-01 8 139697548 139697548 G A COL22A1 Missense_Mutation p.A957V 0.10 unknown(0) TCGA-D8-A1XQ-01 8 142367315 142367315 C T GPR20 Missense_Mutation p.V237M 0.21 tolerated(0.56) benign(0.044) TCGA-D8-A1XQ-01 8 143867884 143867884 G T LY6D Missense_Mutation p.P17T 0.14 deleterious(0.01) unknown(0) TCGA-D8-A1XQ-01 8 144668992 144668992 A G EEF1D Silent p.H374H 0.10 TCGA-D8-A1XQ-01 8 144890855 144890855 T - SCRIB Frame_Shift_Del p.N680Tfs*37 0.09 TCGA-D8-A1XQ-01 8 144995305 144995305 A G PLEC Missense_Mutation p.V3032A 0.21 benign(0.074) TCGA-D8-A1XQ-01 8 145139417 145139417 C A GPAA1 Silent p.S305S 0.10 TCGA-D8-A1XQ-01 8 145626655 145626655 G T CPSF1 Missense_Mutation p.H113N 0.17 tolerated(0.21) benign(0.085) TCGA-D8-A1XQ-01 8 145999021 145999021 T C ZNF34 Missense_Mutation p.Q438R 0.06 tolerated(0.13) probably_damaging(0.999) TCGA-D8-A1XQ-01 8 146076122 146076122 C T COMMD5 Missense_Mutation p.R201Q 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 8 21768297 21768297 A G DOK2 Missense_Mutation p.S169P 0.11 tolerated(0.26) benign(0.008) TCGA-D8-A1XQ-01 8 22006268 22006268 G A LGI3 Missense_Mutation p.A351V 0.13 deleterious(0) probably_damaging(0.963) TCGA-D8-A1XQ-01 8 30539473 30539473 G - GSR Frame_Shift_Del p.P420Lfs*18 0.20 TCGA-D8-A1XQ-01 8 33451226 33451226 G T DUSP26 Silent p.G87G 0.55 TCGA-D8-A1XQ-01 8 3443744 3443744 T A CSMD1 Missense_Mutation p.Y379F 0.19 probably_damaging(0.995) TCGA-D8-A1XQ-01 8 38832596 38832596 C G HTRA4 Silent p.A171A 0.62 TCGA-D8-A1XQ-01 8 41552707 41552707 C T ANK1 Missense_Mutation p.G1076R 0.18 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XQ-01 8 52321102 52321102 T C PXDNL Missense_Mutation p.R1028G 0.33 deleterious(0.02) benign(0.139) TCGA-D8-A1XQ-01 8 52336218 52336218 C A PXDNL Missense_Mutation p.G571V 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-D8-A1XQ-01 8 55537811 55537811 G T RP1 Missense_Mutation p.V457L 0.23 deleterious(0.04) benign(0.015) TCGA-D8-A1XQ-01 8 56015697 56015697 T A XKR4 Missense_Mutation p.S217T 0.29 tolerated(0.13) probably_damaging(0.982) TCGA-D8-A1XQ-01 8 56663530 56663530 G A TMEM68 Missense_Mutation p.A227V 0.12 deleterious(0) probably_damaging(0.969) TCGA-D8-A1XQ-01 8 6378767 6378767 A G ANGPT2 Missense_Mutation p.L244P 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-D8-A1XQ-01 8 66989041 66989041 A G DNAJC5B Missense_Mutation p.Y89C 0.12 deleterious(0) probably_damaging(0.971) TCGA-D8-A1XQ-01 8 68150987 68150987 C G ARFGEF1 Missense_Mutation p.G1041R 0.13 deleterious(0) probably_damaging(0.962) TCGA-D8-A1XQ-01 8 68200263 68200263 G T ARFGEF1 Missense_Mutation p.N318K 0.30 tolerated(1) benign(0.007) TCGA-D8-A1XQ-01 8 68255462 68255462 C T ARFGEF1 Missense_Mutation p.A21T 0.10 tolerated(0.24) benign(0.014) TCGA-D8-A1XQ-01 8 72968046 72968046 C - TRPA1 Frame_Shift_Del p.C414Vfs*16 0.13 TCGA-D8-A1XQ-01 8 75275185 75275185 T G GDAP1 Silent p.L197L 0.21 TCGA-D8-A1XQ-01 8 82571679 82571679 T A IMPA1 Silent p.S306S 0.05 TCGA-D8-A1XQ-01 8 82606341 82606342 TA - SLC10A5 Frame_Shift_Del p.I289Sfs*5 0.47 TCGA-D8-A1XQ-01 8 82713805 82713805 C A SNX16 Missense_Mutation p.S321I 0.04 deleterious_low_confidence(0.01) benign(0.197) TCGA-D8-A1XQ-01 8 87076702 87076702 A G PSKH2 Missense_Mutation p.V115A 0.39 deleterious(0) probably_damaging(0.983) TCGA-D8-A1XQ-01 8 87439993 87439993 C T WWP1 Missense_Mutation p.R427W 0.05 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 8 87440009 87440009 G C WWP1 Missense_Mutation p.G432A 0.03 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1XQ-01 8 88885613 88885613 G A DCAF4L2 Missense_Mutation p.A196V 0.05 tolerated(0.46) benign(0.091) TCGA-D8-A1XQ-01 8 95906154 95906154 C G CCNE2 Missense_Mutation p.E44Q 0.17 tolerated(0.53) benign(0.008) TCGA-D8-A1XQ-01 9 101599427 101599428 CT A GALNT12 Frame_Shift_Del p.L404Wfs*7 0.10 TCGA-D8-A1XQ-01 9 104314716 104314716 G T RNF20 Missense_Mutation p.D528Y 0.17 deleterious(0.01) possibly_damaging(0.861) TCGA-D8-A1XQ-01 9 104433265 104433265 T G GRIN3A Missense_Mutation p.M477L 0.32 tolerated(0.06) benign(0.338) TCGA-D8-A1XQ-01 9 110247971 110247971 T C KLF4 3'UTR 0.15 TCGA-D8-A1XQ-01 9 113212424 113212424 T C SVEP1 Missense_Mutation p.T1340A 0.24 benign(0.028) TCGA-D8-A1XQ-01 9 116176059 116176059 G A C9orf43 Missense_Mutation p.V58M 0.31 deleterious(0) possibly_damaging(0.619) TCGA-D8-A1XQ-01 9 121930239 121930239 C T BRINP1 Missense_Mutation p.R470Q 0.21 tolerated(0.38) possibly_damaging(0.885) TCGA-D8-A1XQ-01 9 123334252 123334252 G A CDK5RAP2 Silent p.L43L 0.24 TCGA-D8-A1XQ-01 9 123954462 123954462 A G RAB14 Silent p.F31F 0.15 TCGA-D8-A1XQ-01 9 125288931 125288931 G T OR1N1 Silent p.T214T 0.21 TCGA-D8-A1XQ-01 9 126219633 126219633 A T DENND1A Missense_Mutation p.Y394N 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-D8-A1XQ-01 9 127661657 127661657 G A GOLGA1 Missense_Mutation p.A421V 0.20 deleterious(0.01) possibly_damaging(0.611) TCGA-D8-A1XQ-01 9 127661658 127661658 C A GOLGA1 Missense_Mutation p.A421S 0.21 tolerated(0.15) benign(0.056) TCGA-D8-A1XQ-01 9 131770942 131770942 G - SH3GLB2 3'UTR 0.32 TCGA-D8-A1XQ-01 9 133570878 133570878 G - EXOSC2 Splice_Site p.X42_splice 0.23 TCGA-D8-A1XQ-01 9 134073169 134073169 A G NUP214 Missense_Mutation p.T1430A 0.21 benign(0) TCGA-D8-A1XQ-01 9 135102255 135102255 G A NTNG2 Missense_Mutation p.A293T 0.40 deleterious(0.01) benign(0.403) TCGA-D8-A1XQ-01 9 136315031 136315031 G T ADAMTS13 Missense_Mutation p.G997W 0.22 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XQ-01 9 138713411 138713411 A G CAMSAP1 Silent p.S1032S 0.20 TCGA-D8-A1XQ-01 9 140082004 140082004 C T ANAPC2 Silent p.G223G 0.26 TCGA-D8-A1XQ-01 9 140330201 140330201 G C ENTPD8 Missense_Mutation p.I377M 0.22 deleterious(0.02) benign(0.068) TCGA-D8-A1XQ-01 9 14776166 14776166 C A FREM1 Missense_Mutation p.G1493V 0.19 deleterious(0.02) possibly_damaging(0.696) TCGA-D8-A1XQ-01 9 27197533 27197533 T C TEK Silent p.A615A 0.16 TCGA-D8-A1XQ-01 9 33467507 33467507 A T NOL6 Missense_Mutation p.I537N 0.27 deleterious(0) probably_damaging(0.943) TCGA-D8-A1XQ-01 9 34726310 34726310 C - FAM205A Frame_Shift_Del p.L310Sfs*9 0.11 TCGA-D8-A1XQ-01 9 35547488 35547488 C A RUSC2 Missense_Mutation p.L324M 0.08 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 9 35616076 35616076 C T CD72 Silent p.Q184Q 0.27 TCGA-D8-A1XQ-01 9 35697743 35697743 C T TLN1 3'UTR 0.19 TCGA-D8-A1XQ-01 9 36100533 36100533 A G RECK Missense_Mutation p.I431V 0.16 deleterious(0.03) benign(0.027) TCGA-D8-A1XQ-01 9 36170592 36170592 C T CCIN Missense_Mutation p.L365F 0.13 tolerated(0.08) probably_damaging(0.998) TCGA-D8-A1XQ-01 9 36236868 36236868 T G GNE Missense_Mutation p.N275H 0.17 deleterious(0.02) possibly_damaging(0.73) TCGA-D8-A1XQ-01 9 36882083 36882083 C T PAX5 Silent p.T310T 0.13 TCGA-D8-A1XQ-01 9 37440931 37440931 G A ZBTB5 Missense_Mutation p.P540S 0.29 deleterious(0.02) probably_damaging(0.911) TCGA-D8-A1XQ-01 9 5769149 5769149 A G KIAA1432 Missense_Mutation p.N1106S 0.09 deleterious(0.01) benign(0.013) TCGA-D8-A1XQ-01 9 71080063 71080063 C G PGM5 Missense_Mutation p.F366L 0.34 deleterious(0) benign(0.378) TCGA-D8-A1XQ-01 9 72659140 72659140 G A MAMDC2 Silent p.A9A 0.17 TCGA-D8-A1XQ-01 9 74842957 74842957 G A GDA Splice_Site p.X307_splice 0.10 TCGA-D8-A1XQ-01 9 79930243 79930243 G A VPS13A Missense_Mutation p.C1496Y 0.22 tolerated(0.79) benign(0.028) TCGA-D8-A1XQ-01 9 84531345 84531345 C T SPATA31D5P RNA 0.16 TCGA-D8-A1XQ-01 9 8526637 8526637 T C PTPRD Silent p.T186T 0.12 TCGA-D8-A1XQ-01 9 86294875 86294875 G A UBQLN1 Nonsense_Mutation p.Q176* 0.29 TCGA-D8-A1XQ-01 9 86584278 86584278 C G HNRNPK 3'UTR 0.36 TCGA-D8-A1XQ-01 9 98740347 98740347 C T ERCC6L2 Silent p.G86G 0.09 TCGA-D8-A1XQ-01 X 100105159 100105159 G A NOX1 Nonsense_Mutation p.Q372* 0.18 TCGA-D8-A1XQ-01 X 102004543 102004543 A - BHLHB9 Frame_Shift_Del p.N209Ifs*9 0.15 TCGA-D8-A1XQ-01 X 102192925 102192925 A G RAB40AL Missense_Mutation p.M227V 0.16 tolerated_low_confidence(0.13) benign(0.005) TCGA-D8-A1XQ-01 X 105132358 105132358 C A NRK Silent p.S108S 0.19 TCGA-D8-A1XQ-01 X 105970597 105970597 C T RNF128 Missense_Mutation p.R152C 0.28 deleterious(0) possibly_damaging(0.764) TCGA-D8-A1XQ-01 X 106308863 106308863 T C RBM41 3'Flank 0.16 TCGA-D8-A1XQ-01 X 107865045 107865045 A - COL4A5 Frame_Shift_Del p.M898Wfs*3 0.15 TCGA-D8-A1XQ-01 X 123196825 123196825 T C STAG2 Missense_Mutation p.L571P 0.15 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XQ-01 X 123517989 123517989 G A TENM1 Silent p.V2264V 0.18 TCGA-D8-A1XQ-01 X 132159686 132159686 A G USP26 Missense_Mutation p.F855L 0.17 tolerated(0.14) possibly_damaging(0.651) TCGA-D8-A1XQ-01 X 135405373 135405373 C T GPR112 Silent p.S169S 0.14 TCGA-D8-A1XQ-01 X 135570623 135570623 G T BRS3 Missense_Mutation p.R117I 0.18 deleterious(0.01) possibly_damaging(0.819) TCGA-D8-A1XQ-01 X 135592335 135592335 G C HTATSF1 Missense_Mutation p.R340P 0.37 deleterious(0) probably_damaging(1) TCGA-D8-A1XQ-01 X 135593359 135593359 T C HTATSF1 Silent p.S485S 0.15 TCGA-D8-A1XQ-01 X 137715089 137715089 G A FGF13 Silent p.S230S 0.27 TCGA-D8-A1XQ-01 X 148607367 148607367 T C IDS Intron 0.14 TCGA-D8-A1XQ-01 X 149101876 149101876 T C CXorf40B Missense_Mutation p.R73G 0.09 tolerated(0.37) benign(0) TCGA-D8-A1XQ-01 X 14929530 14929530 A - MOSPD2 Frame_Shift_Del p.K293Rfs*21 0.20 TCGA-D8-A1XQ-01 X 152225668 152225668 G C PNMA3 Missense_Mutation p.G86R 0.15 deleterious(0) probably_damaging(0.944) TCGA-D8-A1XQ-01 X 1531623 1531623 A G ASMTL Splice_Site p.X549_splice 0.25 TCGA-D8-A1XQ-01 X 153220054 153220054 G A HCFC1 Missense_Mutation p.P1266S 0.13 tolerated_low_confidence(0.33) benign(0) TCGA-D8-A1XQ-01 X 153592631 153592631 A G FLNA Missense_Mutation p.V711A 0.12 tolerated(1) benign(0.012) TCGA-D8-A1XQ-01 X 153633998 153633998 T A DNASE1L1 Splice_Site 0.18 TCGA-D8-A1XQ-01 X 153717203 153717203 A G SLC10A3 Missense_Mutation p.L26S 0.12 tolerated_low_confidence(0.15) benign(0.011) TCGA-D8-A1XQ-01 X 17819378 17819378 C T RAI2 Silent p.P251P 0.17 TCGA-D8-A1XQ-01 X 19554341 19554341 G C SH3KBP1 3'UTR 0.16 TCGA-D8-A1XQ-01 X 20213257 20213257 T C RPS6KA3 Missense_Mutation p.D111G 0.10 deleterious(0) possibly_damaging(0.806) TCGA-D8-A1XQ-01 X 24580025 24580025 C T PCYT1B 3'UTR 0.21 TCGA-D8-A1XQ-01 X 24753571 24753571 C T POLA1 Missense_Mutation p.A624V 0.13 tolerated(0.08) possibly_damaging(0.649) TCGA-D8-A1XQ-01 X 26213277 26213277 T A MAGEB6 3'UTR 0.22 TCGA-D8-A1XQ-01 X 30260712 30260712 G T MAGEB4 Missense_Mutation p.V154F 0.11 deleterious(0) possibly_damaging(0.722) TCGA-D8-A1XQ-01 X 37026522 37026522 G A FAM47C Silent p.P13P 0.17 TCGA-D8-A1XQ-01 X 37515047 37515047 A G LANCL3 Missense_Mutation p.Y227C 0.18 deleterious(0.04) probably_damaging(0.984) TCGA-D8-A1XQ-01 X 41064705 41064705 A G USP9X Silent p.R1658R 0.09 TCGA-D8-A1XQ-01 X 44922970 44922970 C T KDM6A Nonsense_Mutation p.Q611* 0.06 TCGA-D8-A1XQ-01 X 48456353 48456353 C T WDR13 5'UTR 0.12 TCGA-D8-A1XQ-01 X 48558624 48558624 G A SUV39H1 Missense_Mutation p.R103Q 0.53 tolerated(0.4) benign(0.032) TCGA-D8-A1XQ-01 X 49179681 49179681 G A GAGE12J Nonsense_Mutation p.W3* 0.10 TCGA-D8-A1XQ-01 X 49179758 49179758 T C GAGE12J Splice_Site p.X28_splice 0.05 TCGA-D8-A1XQ-01 X 49957212 49957212 C A AKAP4 Missense_Mutation p.G718W 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1XQ-01 X 53423295 53423295 A T SMC1A Missense_Mutation p.M905K 0.16 deleterious(0) benign(0.063) TCGA-D8-A1XQ-01 X 53589824 53589824 C G HUWE1 Missense_Mutation p.S2391T 0.18 probably_damaging(0.914) TCGA-D8-A1XQ-01 X 54784294 54784294 G A ITIH6 Missense_Mutation p.P738L 0.14 tolerated(0.18) benign(0.001) TCGA-D8-A1XQ-01 X 5821330 5821330 G A NLGN4X Silent p.Y463Y 0.21 TCGA-D8-A1XQ-01 X 68383120 68383120 C T PJA1 5'UTR 0.10 TCGA-D8-A1XQ-01 X 71354257 71354257 C T NHSL2 Intron 0.25 TCGA-D8-A1XQ-01 X 78216912 78216912 C A P2RY10 Missense_Mutation p.L299I 0.36 deleterious(0) benign(0.216) TCGA-D8-A1XQ-01 X 79698295 79698295 T - FAM46D Frame_Shift_Del p.F87Lfs*19 0.18 TCGA-D8-A1XQ-01 X 85211231 85211231 G T CHM Missense_Mutation p.L365I 0.18 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XQ-01 X 8995993 8995993 T C FAM9B Silent p.E136E 0.27 TCGA-D8-A1XQ-01 X 91134145 91134145 A T PCDH11X Missense_Mutation p.D969V 0.29 deleterious(0.04) probably_damaging(1) TCGA-D8-A1XQ-01 X 99849281 99849281 G T TNMD Silent p.V115V 0.18 TCGA-D8-A1XR-01 10 112361451 112361451 A G SMC3 Missense_Mutation p.M901V 0.45 tolerated(0.15) benign(0.055) TCGA-D8-A1XR-01 11 119210189 119210190 - C C1QTNF5 Frame_Shift_Ins p.A195Gfs*8 0.37 TCGA-D8-A1XR-01 11 32954399 32954399 C T QSER1 Missense_Mutation p.S403F 0.46 deleterious(0) possibly_damaging(0.8) TCGA-D8-A1XR-01 12 10562124 10562124 T C KLRC4 Silent p.P17P 0.06 TCGA-D8-A1XR-01 12 120156107 120156107 C T CIT Missense_Mutation p.A1371T 0.44 tolerated(0.06) benign(0.126) TCGA-D8-A1XR-01 13 113897392 113897392 G A CUL4A Silent p.K382K 0.46 TCGA-D8-A1XR-01 14 102549404 102549404 G A HSP90AA1 Silent p.I696I 0.04 TCGA-D8-A1XR-01 14 38060798 38060818 GTTGAAGGAGTAGTGGGGGTC - FOXA1 In_Frame_Del p.D391_N397del 0.31 TCGA-D8-A1XR-01 15 44092668 44092668 A T HYPK Intron 0.47 TCGA-D8-A1XR-01 17 21206523 21206523 G A MAP2K3 Missense_Mutation p.S182N 0.11 tolerated(0.1) benign(0.033) TCGA-D8-A1XR-01 17 21319592 21319592 G A KCNJ12 Missense_Mutation p.R313H 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A1XR-01 17 48447871 48447871 G A MRPL27 Silent p.S39S 0.41 TCGA-D8-A1XR-01 19 21299748 21299748 T A ZNF714 Missense_Mutation p.V93D 0.57 tolerated(1) benign(0) TCGA-D8-A1XR-01 19 40275187 40275187 C T LEUTX 5'UTR 0.59 TCGA-D8-A1XR-01 19 57328905 57328905 C T PEG3 Missense_Mutation p.R302Q 0.30 tolerated(0.08) benign(0.301) TCGA-D8-A1XR-01 1 111742312 111742312 A G DENND2D Missense_Mutation p.V59A 0.18 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XR-01 1 154163748 154163748 C A TPM3 Missense_Mutation p.G53W 0.16 deleterious(0.02) possibly_damaging(0.802) TCGA-D8-A1XR-01 1 157069272 157069272 C T ETV3L Missense_Mutation p.G15D 0.30 deleterious(0.01) benign(0.134) TCGA-D8-A1XR-01 1 26310434 26310434 T C PAFAH2 Intron 0.49 TCGA-D8-A1XR-01 21 41741044 41741044 C T DSCAM Missense_Mutation p.A213T 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-D8-A1XR-01 21 47965866 47965866 A T DIP2A Missense_Mutation p.I796F 0.53 deleterious(0.01) probably_damaging(0.972) TCGA-D8-A1XR-01 22 31867837 31867838 - T EIF4ENIF1 Frame_Shift_Ins p.Y55Ifs*2 0.37 TCGA-D8-A1XR-01 22 32889121 32889121 G C FBXO7 Missense_Mutation p.V333L 0.44 tolerated(0.37) benign(0.006) TCGA-D8-A1XR-01 22 49042480 49042480 G A FAM19A5 Missense_Mutation p.A62T 0.47 deleterious(0.04) probably_damaging(1) TCGA-D8-A1XR-01 2 230312186 230312186 G T DNER Silent p.T444T 0.16 TCGA-D8-A1XR-01 3 150421569 150421569 T C FAM194A Silent p.E39E 0.32 TCGA-D8-A1XR-01 3 49694289 49694289 C T BSN Missense_Mutation p.R2434C 0.50 unknown(0) TCGA-D8-A1XR-01 7 1028266 1028266 C T CYP2W1 Intron 0.71 TCGA-D8-A1XR-01 7 99780457 99780457 A T STAG3 Missense_Mutation p.M111L 0.07 tolerated(0.29) benign(0.055) TCGA-D8-A1XR-01 9 115806423 115806423 T C ZFP37 Missense_Mutation p.K159E 0.06 tolerated(0.19) benign(0.01) TCGA-D8-A1XR-01 9 34977197 34977197 T C KIAA1045 Missense_Mutation p.W323R 0.46 deleterious(0) possibly_damaging(0.902) TCGA-D8-A1XR-01 9 40715918 40715918 C A FAM74A3 RNA 0.30 TCGA-D8-A1XR-01 X 19560229 19560229 G A SH3KBP1 Missense_Mutation p.A569V 0.54 tolerated(0.41) benign(0.001) TCGA-D8-A1XR-01 X 46913561 46913561 G A JADE3 Missense_Mutation p.C325Y 0.46 deleterious(0) probably_damaging(0.997) TCGA-D8-A1XR-01 X 78216289 78216289 T A P2RY10 Missense_Mutation p.I91N 0.53 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XS-01 11 4127418 4127418 C G RRM1 Missense_Mutation p.S84C 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-D8-A1XS-01 11 61725644 61725644 C T BEST1 Silent p.F187F 0.21 TCGA-D8-A1XS-01 11 74880266 74880266 C T SLCO2B1 Missense_Mutation p.S166L 0.11 tolerated(0.36) benign(0.011) TCGA-D8-A1XS-01 14 74364800 74364800 G A ZNF410 Missense_Mutation p.V156M 0.07 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-D8-A1XS-01 16 3598192 3598192 C - NLRC3 Frame_Shift_Del p.G951Afs*19 0.26 TCGA-D8-A1XS-01 16 85952387 85952387 C T IRF8 Silent p.F322F 0.70 TCGA-D8-A1XS-01 17 72588199 72588199 C T C17orf77 Missense_Mutation p.A5V 0.49 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-D8-A1XS-01 18 59221632 59221632 G A CDH20 Missense_Mutation p.E704K 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-D8-A1XS-01 1 158059523 158059523 C A KIRREL Missense_Mutation p.S396Y 0.07 deleterious(0) probably_damaging(0.926) TCGA-D8-A1XS-01 1 205813220 205813220 G A PM20D1 Silent p.I234I 0.45 TCGA-D8-A1XS-01 1 94337761 94337761 C A DNTTIP2 Missense_Mutation p.W645L 0.31 deleterious(0) probably_damaging(0.99) TCGA-D8-A1XS-01 20 10256162 10256162 G A SNAP25 Missense_Mutation p.R8H 0.48 tolerated(0.06) possibly_damaging(0.855) TCGA-D8-A1XS-01 22 30210708 30210708 T G ASCC2 Missense_Mutation p.N220H 0.32 deleterious(0.02) benign(0.195) TCGA-D8-A1XS-01 2 152320011 152320011 A G RIF1 Missense_Mutation p.N1326S 0.23 tolerated(0.15) benign(0.031) TCGA-D8-A1XS-01 2 219447740 219447740 C A RQCD1 Missense_Mutation p.A84E 0.05 tolerated(0.2) probably_damaging(0.973) TCGA-D8-A1XS-01 2 43798926 43798926 A C THADA Missense_Mutation p.W662G 0.35 deleterious(0) benign(0.078) TCGA-D8-A1XS-01 3 151163762 151163762 G T IGSF10 Missense_Mutation p.T1336K 0.37 tolerated(0.14) benign(0.079) TCGA-D8-A1XS-01 3 152554180 152554180 C T P2RY1 Silent p.Y203Y 0.40 TCGA-D8-A1XS-01 3 170244644 170244644 G A SLC7A14 Missense_Mutation p.R28C 0.40 deleterious(0) probably_damaging(1) TCGA-D8-A1XS-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1XS-01 5 157098676 157098676 C A C5orf52 Silent p.I18I 0.67 TCGA-D8-A1XS-01 6 16145378 16145378 T A MYLIP Missense_Mutation p.C360S 0.24 tolerated(0.32) benign(0.017) TCGA-D8-A1XS-01 6 84233840 84233840 C T PRSS35 Missense_Mutation p.A227V 0.06 tolerated(0.48) benign(0.004) TCGA-D8-A1XS-01 7 31829674 31829674 C T PDE1C Intron 0.23 TCGA-D8-A1XS-01 8 134477071 134477071 G A ST3GAL1 Silent p.T211T 0.19 TCGA-D8-A1XS-01 8 38775523 38775523 C T PLEKHA2 Silent p.L26L 0.34 TCGA-D8-A1XS-01 9 131024001 131024001 C T GOLGA2 Silent p.Q363Q 0.40 TCGA-D8-A1XT-01 11 123813896 123813896 G T OR6T1 Missense_Mutation p.S217Y 0.17 deleterious(0.03) probably_damaging(0.977) TCGA-D8-A1XT-01 11 1477889 1477889 C T BRSK2 Silent p.H683H 0.42 TCGA-D8-A1XT-01 11 4406447 4406447 A G TRIM21 3'UTR 0.19 TCGA-D8-A1XT-01 11 4842865 4842865 G A OR51F2 Missense_Mutation p.D84N 0.27 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XT-01 11 66463885 66463885 C G SPTBN2 Missense_Mutation p.D1381H 0.24 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XT-01 11 75298416 75298416 G A MAP6 Silent p.P710P 0.29 TCGA-D8-A1XT-01 12 57908826 57908826 G A MARS Missense_Mutation p.G730D 0.20 deleterious(0) probably_damaging(0.951) TCGA-D8-A1XT-01 12 79679692 79679692 G - SYT1 Frame_Shift_Del p.K99Rfs*6 0.22 TCGA-D8-A1XT-01 13 31037698 31037698 C G HMGB1 Missense_Mutation p.E40D 0.26 deleterious(0.02) benign(0.21) TCGA-D8-A1XT-01 16 53686660 53686660 C A RPGRIP1L Missense_Mutation p.V647L 0.29 tolerated(0.1) benign(0.026) TCGA-D8-A1XT-01 17 40280675 40280675 T C RAB5C Missense_Mutation p.T137A 0.07 deleterious(0) benign(0.032) TCGA-D8-A1XT-01 17 7577112 7577112 C G TP53 Missense_Mutation p.A276P 0.43 deleterious(0.03) possibly_damaging(0.631) TCGA-D8-A1XT-01 18 65178250 65178250 C T DSEL Nonsense_Mutation p.W1209* 0.28 TCGA-D8-A1XT-01 18 74701956 74701956 G A MBP Missense_Mutation p.R80W 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A1XT-01 19 58003544 58003544 C T ZNF419 Missense_Mutation p.P89L 0.34 tolerated(0.09) possibly_damaging(0.703) TCGA-D8-A1XT-01 1 147087614 147087614 C A BCL9 Missense_Mutation p.A191D 0.17 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XT-01 1 152280540 152280540 C T FLG Silent p.Q2274Q 0.38 TCGA-D8-A1XT-01 1 156288708 156288708 C T CCT3 Missense_Mutation p.R237H 0.56 deleterious(0) possibly_damaging(0.888) TCGA-D8-A1XT-01 1 162492385 162492385 T G UHMK1 3'UTR 0.30 TCGA-D8-A1XT-01 20 61834555 61834555 G T YTHDF1 Missense_Mutation p.P246H 0.18 deleterious(0.04) possibly_damaging(0.832) TCGA-D8-A1XT-01 22 39413824 39413824 C T APOBEC3C Silent p.C76C 0.11 TCGA-D8-A1XT-01 22 39413893 39413893 C G APOBEC3C Missense_Mutation p.D99E 0.15 tolerated(1) benign(0.001) TCGA-D8-A1XT-01 22 39414002 39414002 C T APOBEC3C Missense_Mutation p.R136C 0.21 tolerated(0.12) benign(0.021) TCGA-D8-A1XT-01 22 39414291 39414291 G A APOBEC3C Missense_Mutation p.E158K 0.21 tolerated(0.3) benign(0.014) TCGA-D8-A1XT-01 2 109087385 109087385 C G GCC2 Missense_Mutation p.L534V 0.33 tolerated(0.06) benign(0.007) TCGA-D8-A1XT-01 2 166847987 166847987 C T SCN1A Missense_Mutation p.R1933Q 0.27 tolerated(0.3) benign(0) TCGA-D8-A1XT-01 2 204037478 204037478 T G NBEAL1 Silent p.T2046T 0.21 TCGA-D8-A1XT-01 2 56420362 56420362 G A CCDC85A Missense_Mutation p.A343T 0.24 tolerated_low_confidence(0.5) benign(0.007) TCGA-D8-A1XT-01 2 74754622 74754622 A G AUP1 Silent p.L313L 0.10 TCGA-D8-A1XT-01 3 183882690 183882690 T A DVL3 Missense_Mutation p.F190L 0.15 tolerated(0.76) benign(0.026) TCGA-D8-A1XT-01 4 122078381 122078381 C T TNIP3 Silent p.T154T 0.28 TCGA-D8-A1XT-01 4 122853631 122853631 C T TRPC3 Missense_Mutation p.R261Q 0.36 tolerated(0.14) benign(0.087) TCGA-D8-A1XT-01 4 134072136 134072136 C T PCDH10 Nonsense_Mutation p.Q281* 0.16 TCGA-D8-A1XT-01 4 146601433 146601433 C A C4orf51 Silent p.I26I 0.25 TCGA-D8-A1XT-01 4 76788502 76788502 G - PPEF2 Frame_Shift_Del p.L574Sfs*14 0.23 TCGA-D8-A1XT-01 5 176519685 176519685 C G FGFR4 Nonsense_Mutation p.Y319* 0.10 TCGA-D8-A1XT-01 5 35773992 35773992 C T SPEF2 Intron 0.33 TCGA-D8-A1XT-01 5 465362 465362 G A EXOC3 Missense_Mutation p.R638H 0.30 tolerated(0.34) possibly_damaging(0.616) TCGA-D8-A1XT-01 6 121631945 121631945 C T TBC1D32 Missense_Mutation p.D182N 0.33 deleterious(0.03) possibly_damaging(0.836) TCGA-D8-A1XT-01 7 96639271 96639271 G C DLX6 Missense_Mutation p.S265T 0.32 tolerated(0.56) benign(0.085) TCGA-D8-A1XT-01 8 72973917 72973917 G A TRPA1 Missense_Mutation p.S296F 0.26 deleterious(0.01) possibly_damaging(0.879) TCGA-D8-A1XT-01 9 120476456 120476456 G T TLR4 Missense_Mutation p.D684Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-D8-A1XT-01 9 134360104 134360104 G A PRRC2B Missense_Mutation p.R1831Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-D8-A1XT-01 9 140777361 140777361 C T CACNA1B Intron 0.10 TCGA-D8-A1XT-01 9 70972286 70972286 G A PGM5 Silent p.Q81Q 0.30 TCGA-D8-A1XT-01 X 119293091 119293091 G A RHOXF2 Missense_Mutation p.G84R 0.28 tolerated(0.52) possibly_damaging(0.548) TCGA-D8-A1XT-01 X 71830973 71830973 T C PHKA1 Missense_Mutation p.T811A 0.22 tolerated(0.33) benign(0.003) TCGA-D8-A1XU-01 10 114185175 114185175 T C ACSL5 Missense_Mutation p.I614T 0.43 deleterious(0) probably_damaging(1) TCGA-D8-A1XU-01 10 13251320 13251321 - A MCM10 3'UTR 0.18 TCGA-D8-A1XU-01 10 17373535 17373535 A T ST8SIA6 Missense_Mutation p.C132S 0.24 deleterious(0.01) benign(0.342) TCGA-D8-A1XU-01 12 109016798 109016798 G A SELPLG 3'UTR 0.37 TCGA-D8-A1XU-01 12 40223928 40223928 A G SLC2A13 Silent p.S474S 0.32 TCGA-D8-A1XU-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.65 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XU-01 15 54590048 54590048 G A UNC13C Missense_Mutation p.R1343Q 0.31 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-D8-A1XU-01 15 68124619 68124619 G A SKOR1 Silent p.L768L 0.36 TCGA-D8-A1XU-01 19 47424345 47424345 C T ARHGAP35 Nonsense_Mutation p.Q805* 0.34 TCGA-D8-A1XU-01 19 51132704 51132704 C T SYT3 Silent p.E376E 0.42 TCGA-D8-A1XU-01 19 52521732 52521732 C T ZNF614 Missense_Mutation p.E11K 0.34 tolerated(0.14) probably_damaging(0.992) TCGA-D8-A1XU-01 1 103573639 103573639 C T COL11A1 Silent p.E32E 0.04 TCGA-D8-A1XU-01 1 152329961 152329961 T A FLG2 Nonsense_Mutation p.K101* 0.27 TCGA-D8-A1XU-01 1 158590173 158590173 C T SPTA1 Silent p.E2068E 0.29 TCGA-D8-A1XU-01 1 160990937 160990937 G C F11R 5'UTR 0.35 TCGA-D8-A1XU-01 20 31041156 31041156 C T C20orf112 Missense_Mutation p.R239H 0.31 deleterious(0) probably_damaging(0.968) TCGA-D8-A1XU-01 20 52188259 52188259 C G ZNF217 Splice_Site 0.14 TCGA-D8-A1XU-01 22 28494912 28494912 C T TTC28 Missense_Mutation p.V1180I 0.63 tolerated(0.1) benign(0.075) TCGA-D8-A1XU-01 22 51215160 51215160 G T RABL2B Missense_Mutation p.S52Y 0.46 deleterious(0) probably_damaging(0.96) TCGA-D8-A1XU-01 2 168115358 168115358 G A XIRP2 3'UTR 0.21 TCGA-D8-A1XU-01 2 196801373 196801373 C A DNAH7 Missense_Mutation p.L1074F 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A1XU-01 2 203848458 203848458 G C CARF 3'UTR 0.35 TCGA-D8-A1XU-01 2 207431970 207431970 C T ADAM23 Missense_Mutation p.S473L 0.25 deleterious(0) probably_damaging(0.928) TCGA-D8-A1XU-01 2 48844987 48844987 A G GTF2A1L 5'UTR 0.34 TCGA-D8-A1XU-01 3 169847215 169847215 T C PHC3 Missense_Mutation p.I349V 0.30 tolerated(0.12) benign(0.001) TCGA-D8-A1XU-01 3 185190782 185190782 G - MAP3K13 Frame_Shift_Del p.E555Kfs*52 0.43 TCGA-D8-A1XU-01 3 39174599 39174599 G A TTC21A Missense_Mutation p.M880I 0.61 tolerated(0.28) benign(0.003) TCGA-D8-A1XU-01 4 173150860 173150860 G A GALNTL6 Silent p.L64L 0.48 TCGA-D8-A1XU-01 4 6621677 6621677 C T MAN2B2 Silent p.S946S 0.79 TCGA-D8-A1XU-01 5 41911259 41911259 G A C5orf51 Missense_Mutation p.R155K 0.30 tolerated(0.88) benign(0.001) TCGA-D8-A1XU-01 6 117658378 117658378 C T ROS1 Silent p.T1735T 0.65 TCGA-D8-A1XU-01 6 151869573 151869573 A G CCDC170 Silent p.R241R 0.74 TCGA-D8-A1XU-01 6 31727670 31727670 C G MSH5 Missense_Mutation p.L535V 0.35 deleterious(0.01) benign(0.393) TCGA-D8-A1XU-01 7 101459292 101459292 C T CUX1 5'UTR 0.56 TCGA-D8-A1XU-01 7 151848038 151848043 TATTAC - KMT2C In_Frame_Del p.S4239_N4240del 0.15 TCGA-D8-A1XU-01 8 103664109 103664109 G A KLF10 Nonsense_Mutation p.Q151* 0.45 TCGA-D8-A1XU-01 9 131151719 131151719 G C URM1 Missense_Mutation p.R123T 0.30 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-D8-A1XU-01 9 131151720 131151720 G T URM1 Missense_Mutation p.R123S 0.30 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-D8-A1XV-01 11 118626189 118626189 T A DDX6 Missense_Mutation p.I400L 0.41 deleterious(0) benign(0.166) TCGA-D8-A1XV-01 11 5841962 5841962 C T OR52N2 Missense_Mutation p.R133C 0.06 deleterious(0.02) benign(0.028) TCGA-D8-A1XV-01 13 25823617 25823617 C T MTMR6 Missense_Mutation p.R540H 0.41 tolerated(0.53) benign(0) TCGA-D8-A1XV-01 14 23511743 23511743 C T PSMB11 Silent p.T103T 0.08 TCGA-D8-A1XV-01 14 38060754 38060754 T - FOXA1 Frame_Shift_Del p.Q412Rfs*28 0.37 TCGA-D8-A1XV-01 15 65459107 65459107 G C CLPX Silent p.V125V 0.44 TCGA-D8-A1XV-01 15 75047325 75047325 G A CYP1A2 Missense_Mutation p.V483M 0.27 tolerated(0.09) benign(0.184) TCGA-D8-A1XV-01 15 90617422 90617422 C G ZNF710 Missense_Mutation p.F575L 0.10 deleterious(0) probably_damaging(0.973) TCGA-D8-A1XV-01 16 30616444 30616444 G A ZNF689 Missense_Mutation p.S215F 0.43 deleterious(0) probably_damaging(0.985) TCGA-D8-A1XV-01 16 66946404 66946404 T A CDH16 Intron 0.43 TCGA-D8-A1XV-01 17 40575012 40575012 G A PTRF Missense_Mutation p.P35L 0.50 tolerated(0.12) benign(0.003) TCGA-D8-A1XV-01 17 43011380 43011380 T A KIF18B Missense_Mutation p.I325F 0.49 deleterious(0) probably_damaging(0.951) TCGA-D8-A1XV-01 18 23713974 23713974 C T PSMA8 Silent p.D15D 0.48 TCGA-D8-A1XV-01 18 33048579 33048579 G A INO80C Missense_Mutation p.P228L 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-D8-A1XV-01 19 19767522 19767522 G C ATP13A1 Missense_Mutation p.R344G 0.38 tolerated(0.06) benign(0.339) TCGA-D8-A1XV-01 19 22836139 22836139 G C ZNF492 5'UTR 0.38 TCGA-D8-A1XV-01 19 35849945 35849945 C T FFAR3 Silent p.D51D 0.35 TCGA-D8-A1XV-01 19 43864445 43864445 C A CD177 3'UTR 0.45 TCGA-D8-A1XV-01 19 45209123 45209123 G A CEACAM16 Missense_Mutation p.V309M 0.40 tolerated(0.29) probably_damaging(0.954) TCGA-D8-A1XV-01 1 160062103 160062103 T C IGSF8 Silent p.S565S 0.21 TCGA-D8-A1XV-01 1 178514983 178514983 C G C1ORF220 Missense_Mutation p.N123K 0.21 possibly_damaging(0.607) TCGA-D8-A1XV-01 1 36030851 36030851 C T NCDN Nonsense_Mutation p.R593* 0.44 TCGA-D8-A1XV-01 1 46088465 46088465 G A CCDC17 Missense_Mutation p.P233L 0.45 tolerated(0.26) benign(0.081) TCGA-D8-A1XV-01 1 86841953 86841953 C A ODF2L Missense_Mutation p.G258V 0.45 tolerated(0.08) possibly_damaging(0.844) TCGA-D8-A1XV-01 2 160824180 160824180 C T PLA2R1 Missense_Mutation p.G925D 0.44 tolerated(0.15) benign(0.12) TCGA-D8-A1XV-01 3 112545931 112545931 A G CD200R1L Silent p.S196S 0.31 TCGA-D8-A1XV-01 3 121416391 121416391 A G GOLGB1 Silent p.N993N 0.23 TCGA-D8-A1XV-01 3 19961994 19961994 C T EFHB Intron 0.36 TCGA-D8-A1XV-01 4 57777582 57777582 G T REST Nonsense_Mutation p.E260* 0.31 TCGA-D8-A1XV-01 4 84231232 84231232 C A HPSE Splice_Site p.X281_splice 0.40 TCGA-D8-A1XV-01 5 140725686 140725686 G C PCDHGA3 Missense_Mutation p.A696P 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D8-A1XV-01 5 179226297 179226297 C T MGAT4B Missense_Mutation p.R367Q 0.41 tolerated(0.21) possibly_damaging(0.701) TCGA-D8-A1XV-01 5 78671930 78671930 G A HOMER1 Missense_Mutation p.R323C 0.20 deleterious(0) possibly_damaging(0.739) TCGA-D8-A1XV-01 6 64422754 64422754 G T PHF3 Missense_Mutation p.G1757V 0.49 deleterious(0) probably_damaging(1) TCGA-D8-A1XV-01 7 100187289 100187289 G A FBXO24 Missense_Mutation p.R9Q 0.55 deleterious_low_confidence(0) unknown(0) TCGA-D8-A1XV-01 7 22985376 22985376 C T FAM126A Silent p.P466P 0.12 TCGA-D8-A1XV-01 7 98957253 98957253 G A ARPC1A Missense_Mutation p.S292N 0.06 tolerated(0.26) benign(0.008) TCGA-D8-A1XW-01 10 106160488 106160488 T A CCDC147 Missense_Mutation p.D622E 0.10 tolerated(0.1) benign(0.254) TCGA-D8-A1XW-01 10 25464818 25464818 T C GPR158 Missense_Mutation p.Y157H 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A1XW-01 10 88123716 88123716 A T GRID1 Missense_Mutation p.F73I 0.32 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XW-01 10 88123717 88123717 T A GRID1 Silent p.P72P 0.32 TCGA-D8-A1XW-01 10 98742390 98742390 G T C10orf12 Missense_Mutation p.D415Y 0.20 tolerated(0.1) benign(0.317) TCGA-D8-A1XW-01 10 98742978 98742978 A G C10orf12 Missense_Mutation p.K611E 0.12 tolerated(0.56) possibly_damaging(0.493) TCGA-D8-A1XW-01 11 111594680 111594680 G A SIK2 Missense_Mutation p.D870N 0.23 tolerated_low_confidence(0.14) benign(0.004) TCGA-D8-A1XW-01 11 124180486 124180486 C G OR8D1 Missense_Mutation p.M59I 0.12 deleterious(0.01) benign(0.139) TCGA-D8-A1XW-01 11 134115368 134115368 G A VPS26B Missense_Mutation p.V299I 0.52 tolerated(0.26) benign(0.001) TCGA-D8-A1XW-01 11 48149442 48149442 C T PTPRJ Missense_Mutation p.H402Y 0.11 tolerated(0.16) benign(0.008) TCGA-D8-A1XW-01 11 55065515 55065515 G T TRIM51HP RNA 0.36 TCGA-D8-A1XW-01 11 68566686 68566686 G T CPT1A Nonsense_Mutation p.Y231* 0.26 TCGA-D8-A1XW-01 12 103288660 103288660 G A PAH Missense_Mutation p.P69S 0.20 tolerated(0.11) benign(0.438) TCGA-D8-A1XW-01 12 106461184 106461184 G A NUAK1 Missense_Mutation p.T461M 0.23 tolerated(0.11) benign(0.049) TCGA-D8-A1XW-01 12 50748233 50748233 C A FAM186A Missense_Mutation p.M794I 0.25 tolerated(0.1) benign(0.065) TCGA-D8-A1XW-01 12 57441140 57441140 T C MYO1A Missense_Mutation p.E126G 0.40 tolerated(0.07) benign(0.068) TCGA-D8-A1XW-01 12 72956000 72956000 C T TRHDE Missense_Mutation p.T570I 0.29 deleterious(0.05) benign(0.238) TCGA-D8-A1XW-01 12 76741020 76741020 G T BBS10 Missense_Mutation p.R249S 0.33 deleterious(0.02) benign(0.013) TCGA-D8-A1XW-01 13 28141929 28141929 C G LNX2 Missense_Mutation p.E235Q 0.05 deleterious(0.03) probably_damaging(1) TCGA-D8-A1XW-01 14 103400160 103400160 T G CDC42BPB Missense_Mutation p.K1675N 0.43 tolerated(0.1) probably_damaging(0.998) TCGA-D8-A1XW-01 14 21560535 21560535 G A ZNF219 Silent p.C307C 0.56 TCGA-D8-A1XW-01 14 75248373 75248373 C A YLPM1 Missense_Mutation p.P543T 0.50 unknown(0) TCGA-D8-A1XW-01 15 55727258 55727258 T C DYX1C1 Splice_Site p.X298_splice 0.40 TCGA-D8-A1XW-01 15 84488589 84488589 C T ADAMTSL3 Silent p.F130F 0.32 TCGA-D8-A1XW-01 16 1279650 1279650 G C TPSB2 Silent p.V50V 0.68 TCGA-D8-A1XW-01 16 20997029 20997030 GA T DNAH3 Frame_Shift_Del p.I2345Nfs*9 0.22 TCGA-D8-A1XW-01 16 29872462 29872462 A G CDIPT Silent p.S99S 0.26 TCGA-D8-A1XW-01 16 3339518 3339518 C T ZNF263 Missense_Mutation p.H338Y 0.23 deleterious(0.04) benign(0.024) TCGA-D8-A1XW-01 16 71061409 71061409 T C HYDIN Intron 0.29 TCGA-D8-A1XW-01 16 72166723 72166723 C T PMFBP1 Silent p.E457E 0.28 TCGA-D8-A1XW-01 16 72830766 72830766 C G ZFHX3 Missense_Mutation p.D1939H 0.27 probably_damaging(0.996) TCGA-D8-A1XW-01 17 19474864 19474864 T C SLC47A1 Silent p.N461N 0.04 TCGA-D8-A1XW-01 17 28613877 28613877 A C BLMH Nonsense_Mutation p.Y169* 0.33 TCGA-D8-A1XW-01 17 3101122 3101122 A T OR1A2 Missense_Mutation p.M104L 0.35 tolerated(0.35) benign(0.008) TCGA-D8-A1XW-01 17 39675147 39675147 G A KRT15 5'UTR 0.50 TCGA-D8-A1XW-01 17 43314962 43314962 G A FMNL1 Missense_Mutation p.G284R 0.68 deleterious(0) unknown(0) TCGA-D8-A1XW-01 17 7578554 7578554 A T TP53 Missense_Mutation p.Y126N 0.61 deleterious(0) probably_damaging(1) TCGA-D8-A1XW-01 18 3067226 3067226 C G MYOM1 3'UTR 0.18 TCGA-D8-A1XW-01 18 34335149 34335149 T C FHOD3 Missense_Mutation p.F1259L 0.05 deleterious(0.02) probably_damaging(0.976) TCGA-D8-A1XW-01 18 71740756 71740756 G C FBXO15 Silent p.V491V 0.12 TCGA-D8-A1XW-01 19 22018959 22018959 G A ZNF43 5'UTR 0.34 TCGA-D8-A1XW-01 19 22171632 22171632 A C ZNF208 Nonsense_Mutation p.L28* 0.20 TCGA-D8-A1XW-01 19 31769775 31769775 G A TSHZ3 Silent p.P308P 0.51 TCGA-D8-A1XW-01 19 37427682 37427682 T A ZNF568 Missense_Mutation p.L57H 0.19 deleterious(0) possibly_damaging(0.807) TCGA-D8-A1XW-01 19 41231346 41231346 T G ITPKC Splice_Site p.X419_splice 0.18 TCGA-D8-A1XW-01 19 46299287 46299287 A C RSPH6A Missense_Mutation p.I665S 0.13 deleterious(0.01) possibly_damaging(0.67) TCGA-D8-A1XW-01 19 55142998 55142998 A T LILRB1 Missense_Mutation p.T40S 0.08 tolerated(0.38) benign(0.001) TCGA-D8-A1XW-01 19 55526258 55526258 C G GP6 Missense_Mutation p.R352T 0.25 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-D8-A1XW-01 1 109256138 109256138 T G FNDC7 Silent p.A23A 0.12 TCGA-D8-A1XW-01 1 150238443 150238443 C G APH1A 3'UTR 0.32 TCGA-D8-A1XW-01 1 17548919 17548919 T A PADI1 Missense_Mutation p.M76K 0.25 deleterious(0) benign(0.093) TCGA-D8-A1XW-01 1 179308636 179308636 C T SOAT1 Silent p.L151L 0.22 TCGA-D8-A1XW-01 1 186038896 186038896 G C HMCN1 Missense_Mutation p.V2661L 0.04 probably_damaging(0.989) TCGA-D8-A1XW-01 1 196227521 196227521 G A KCNT2 Missense_Mutation p.S1005L 0.21 tolerated(0.06) benign(0.015) TCGA-D8-A1XW-01 1 215847722 215847722 C A USH2A Missense_Mutation p.A4511S 0.28 probably_damaging(0.998) TCGA-D8-A1XW-01 1 231335936 231335936 C T TRIM67 Nonsense_Mutation p.Q436* 0.18 TCGA-D8-A1XW-01 1 23697584 23697584 G C C1orf213 3'UTR 0.33 TCGA-D8-A1XW-01 1 248525091 248525091 C T OR2T4 Missense_Mutation p.A70V 0.12 deleterious(0.01) benign(0.337) TCGA-D8-A1XW-01 1 248570049 248570049 T A OR2T1 Missense_Mutation p.C252S 0.35 deleterious(0.02) probably_damaging(1) TCGA-D8-A1XW-01 1 248722668 248722668 G A OR2T29 Missense_Mutation p.A42V 0.10 deleterious(0.01) benign(0.127) TCGA-D8-A1XW-01 1 43828804 43828804 C A CDC20 3'UTR 0.28 TCGA-D8-A1XW-01 1 54605732 54605732 G T CDCP2 Missense_Mutation p.P271T 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A1XW-01 20 15412054 15412054 T C MACROD2 Missense_Mutation p.F182S 0.03 deleterious(0) probably_damaging(1) TCGA-D8-A1XW-01 20 34528959 34528959 G A PHF20 Silent p.K962K 0.49 TCGA-D8-A1XW-01 20 62520553 62520553 A C TPD52L2 Missense_Mutation p.T186P 0.47 deleterious(0) possibly_damaging(0.776) TCGA-D8-A1XW-01 21 30331787 30331787 A C LTN1 Missense_Mutation p.H908Q 0.21 tolerated(0.07) possibly_damaging(0.597) TCGA-D8-A1XW-01 21 30925900 30925900 T C GRIK1 Silent p.K911K 0.05 TCGA-D8-A1XW-01 21 43444833 43444833 G C ZNF295-AS1 RNA 0.22 TCGA-D8-A1XW-01 22 18028881 18028881 C A CECR2 Missense_Mutation p.H1281N 0.44 deleterious(0) probably_damaging(0.99) TCGA-D8-A1XW-01 22 22020368 22020368 A T PPIL2 5'UTR 0.18 TCGA-D8-A1XW-01 22 26164633 26164633 C T MYO18B Silent p.T250T 0.57 TCGA-D8-A1XW-01 22 29670255 29670255 A G EWSR1 Silent p.V76V 0.29 TCGA-D8-A1XW-01 22 32841684 32841684 C A BPIFC Missense_Mutation p.V178F 0.10 tolerated(0.29) probably_damaging(0.938) TCGA-D8-A1XW-01 22 40417461 40417461 C T FAM83F Missense_Mutation p.S316F 0.41 deleterious(0) probably_damaging(0.945) TCGA-D8-A1XW-01 22 43287157 43287157 C G PACSIN2 Missense_Mutation p.W83C 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A1XW-01 2 102791190 102791190 G C IL1R1 Missense_Mutation p.A379P 0.09 deleterious(0.03) probably_damaging(0.921) TCGA-D8-A1XW-01 2 130900856 130900856 G A CCDC74B Missense_Mutation p.T94I 0.20 deleterious(0) benign(0.331) TCGA-D8-A1XW-01 2 141625166 141625166 C T LRP1B Silent p.Q1524Q 0.05 TCGA-D8-A1XW-01 2 177015045 177015045 G A HOXD3 5'Flank 0.09 TCGA-D8-A1XW-01 2 202141566 202141566 A T CASP8 Missense_Mutation p.Y285F 0.58 deleterious(0.01) probably_damaging(1) TCGA-D8-A1XW-01 2 203992635 203992635 T C NBEAL1 Missense_Mutation p.I1098T 0.36 tolerated(0.06) benign(0.283) TCGA-D8-A1XW-01 2 235950855 235950855 C G SH3BP4 Missense_Mutation p.P481R 0.33 deleterious(0) probably_damaging(1) TCGA-D8-A1XW-01 2 26998432 26998432 G A SLC35F6 Silent p.V141V 0.64 TCGA-D8-A1XW-01 2 39095461 39095461 G A DHX57 Silent p.H29H 0.08 TCGA-D8-A1XW-01 2 86400803 86400803 G C IMMT Missense_Mutation p.Q131E 0.25 tolerated(1) benign(0.001) TCGA-D8-A1XW-01 3 101370349 101370349 C T ZBTB11 Silent p.V941V 0.14 TCGA-D8-A1XW-01 3 10387191 10387191 G T ATP2B2 Missense_Mutation p.S860R 0.32 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XW-01 3 10387192 10387192 C G ATP2B2 Missense_Mutation p.S860T 0.32 deleterious(0) probably_damaging(0.977) TCGA-D8-A1XW-01 3 113785093 113785093 C G QTRTD1 Silent p.V85V 0.30 TCGA-D8-A1XW-01 3 183898426 183898445 CCTCCAGCATCAGGTAAGCT - AP2M1 Splice_Site p.X142_splice 0.25 TCGA-D8-A1XW-01 3 190321988 190321988 A T IL1RAP Nonsense_Mutation p.K46* 0.31 TCGA-D8-A1XW-01 4 162307095 162307095 T C FSTL5 Missense_Mutation p.K783R 0.24 tolerated(0.1) probably_damaging(0.952) TCGA-D8-A1XW-01 4 54374205 54374205 G A LNX1 Silent p.D190D 0.48 TCGA-D8-A1XW-01 4 62758497 62758497 C G LPHN3 Missense_Mutation p.T467S 0.07 tolerated(0.56) benign(0.006) TCGA-D8-A1XW-01 4 77357170 77357170 C A SHROOM3 5'UTR 0.21 TCGA-D8-A1XW-01 4 83278496 83278499 TTCC AA HNRNPD Frame_Shift_Del p.M240Ifs*2 0.53 TCGA-D8-A1XW-01 5 1394670 1394670 C G SLC6A3 3'UTR 0.43 TCGA-D8-A1XW-01 5 140564371 140564371 C T PCDHB16 Missense_Mutation p.S746F 0.54 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-D8-A1XW-01 5 1406352 1406352 C G SLC6A3 Missense_Mutation p.S517T 0.72 deleterious(0) benign(0.201) TCGA-D8-A1XW-01 5 140953199 140953199 G C DIAPH1 Missense_Mutation p.P740A 0.16 unknown(0) TCGA-D8-A1XW-01 5 180687133 180687133 A C TRIM52 Missense_Mutation p.F228V 0.45 tolerated(0.09) benign(0.002) TCGA-D8-A1XW-01 5 38427224 38427224 C T EGFLAM Missense_Mutation p.R642W 0.07 tolerated(0.09) benign(0.066) TCGA-D8-A1XW-01 6 101306757 101306757 C T ASCC3 Intron 0.68 TCGA-D8-A1XW-01 6 142726951 142726951 A G GPR126 Missense_Mutation p.T752A 0.64 tolerated(0.05) possibly_damaging(0.452) TCGA-D8-A1XW-01 6 168343808 168343808 G C MLLT4 Splice_Site p.X1027_splice 0.66 TCGA-D8-A1XW-01 6 27840018 27840018 C G HIST1H3I Missense_Mutation p.A26P 0.18 deleterious_low_confidence(0.02) benign(0.013) TCGA-D8-A1XW-01 6 33154479 33154479 A G COL11A2 Silent p.P241P 0.05 TCGA-D8-A1XW-01 6 33648147 33648147 G A ITPR3 Silent p.V1422V 0.08 TCGA-D8-A1XW-01 6 46293332 46293332 C T RCAN2 Intron 0.86 TCGA-D8-A1XW-01 7 38502653 38502653 G T AMPH Silent p.L270L 0.15 TCGA-D8-A1XW-01 7 4285355 4285355 A G SDK1 Missense_Mutation p.D2100G 0.50 deleterious(0) possibly_damaging(0.703) TCGA-D8-A1XW-01 7 65552371 65552371 C T ASL Missense_Mutation p.A218V 0.31 tolerated(0.08) benign(0.008) TCGA-D8-A1XW-01 8 101078504 101078504 T - RGS22 Frame_Shift_Del p.D206Ifs*5 0.17 TCGA-D8-A1XW-01 8 135622886 135622886 T C ZFAT Missense_Mutation p.D154G 0.12 deleterious(0.05) benign(0.212) TCGA-D8-A1XW-01 8 144400190 144400190 T G TOP1MT Missense_Mutation p.T405P 0.19 deleterious(0) possibly_damaging(0.611) TCGA-D8-A1XW-01 8 29003884 29003884 G C KIF13B Intron 0.28 TCGA-D8-A1XW-01 8 37720609 37720609 G C RAB11FIP1 Missense_Mutation p.A1219G 0.17 deleterious(0.03) possibly_damaging(0.721) TCGA-D8-A1XW-01 8 53536264 53536264 T C RB1CC1 3'UTR 0.21 TCGA-D8-A1XW-01 8 68139523 68139523 C T ARFGEF1 Missense_Mutation p.M1255I 0.14 deleterious(0) probably_damaging(0.991) TCGA-D8-A1XW-01 8 70981582 70981589 AAGGTAAT - PRDM14 Frame_Shift_Del p.P171Tfs*63 0.16 TCGA-D8-A1XW-01 8 95399325 95399325 T C RAD54B Silent p.L624L 0.15 TCGA-D8-A1XW-01 9 138669336 138669336 C T KCNT1 Silent p.I834I 0.39 TCGA-D8-A1XW-01 9 3856175 3856175 A C GLIS3 Silent p.P769P 0.26 TCGA-D8-A1XW-01 X 106184859 106184877 AGCCCTGTATGAAGGAGTG - MORC4 Splice_Site p.X887_splice 0.56 TCGA-D8-A1XW-01 X 130416483 130416483 T C IGSF1 Missense_Mutation p.Y394C 0.60 tolerated(0.18) benign(0.015) TCGA-D8-A1XW-01 X 153631301 153631301 G C DNASE1L1 Missense_Mutation p.F252L 0.76 deleterious(0.01) benign(0.107) TCGA-D8-A1XW-01 X 53115273 53115273 G A TSPYL2 Missense_Mutation p.E567K 0.10 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-D8-A1XW-01 X 77381547 77381547 T A PGK1 3'UTR 0.31 TCGA-D8-A1XY-01 10 95718978 95718978 C T PIPSL RNA 0.14 TCGA-D8-A1XY-01 10 98281836 98281836 C A TM9SF3 3'UTR 0.11 TCGA-D8-A1XY-01 11 18566328 18566328 T C UEVLD Missense_Mutation p.Y301C 0.22 deleterious(0) probably_damaging(1) TCGA-D8-A1XY-01 11 47204094 47204094 C T PACSIN3 Missense_Mutation p.R24H 0.11 deleterious(0.01) possibly_damaging(0.542) TCGA-D8-A1XY-01 11 57367733 57367733 G A SERPING1 Missense_Mutation p.A145T 0.22 deleterious(0) probably_damaging(0.986) TCGA-D8-A1XY-01 11 67220272 67220272 G A CABP4 5'Flank 0.36 TCGA-D8-A1XY-01 11 77812019 77812019 C T ALG8 Silent p.K524K 0.26 TCGA-D8-A1XY-01 11 92714892 92714892 C A MTNR1B Missense_Mutation p.T168N 0.09 deleterious(0) probably_damaging(0.99) TCGA-D8-A1XY-01 12 123214098 123214098 G C HCAR1 Silent p.T263T 0.05 TCGA-D8-A1XY-01 12 133733005 133733005 T G ZNF10 Missense_Mutation p.H391Q 0.15 tolerated(0.47) benign(0.155) TCGA-D8-A1XY-01 12 29639257 29639257 G A OVCH1 Missense_Mutation p.S306L 0.05 tolerated(0.43) benign(0.002) TCGA-D8-A1XY-01 12 51112558 51112558 G T DIP2B Missense_Mutation p.G973V 0.22 deleterious(0) probably_damaging(0.969) TCGA-D8-A1XY-01 12 6782570 6782570 C T ZNF384 Silent p.S241S 0.08 TCGA-D8-A1XY-01 13 52548306 52548306 C T ATP7B Silent p.P350P 0.32 TCGA-D8-A1XY-01 14 65239968 65239968 C T SPTB Silent p.P1716P 0.14 TCGA-D8-A1XY-01 15 100672248 100672248 C T ADAMTS17 Missense_Mutation p.G562E 0.28 deleterious(0) probably_damaging(1) TCGA-D8-A1XY-01 15 45722878 45722878 C T C15orf48 5'UTR 0.31 TCGA-D8-A1XY-01 15 52356190 52356190 G T MAPK6 Missense_Mutation p.D387Y 0.23 deleterious(0) probably_damaging(0.982) TCGA-D8-A1XY-01 16 2140121 2140121 C T PKD1 Silent p.P4173P 0.10 TCGA-D8-A1XY-01 16 31143759 31143759 G A PRSS8 Silent p.D232D 0.26 TCGA-D8-A1XY-01 16 68732208 68732208 G A CDH3 Missense_Mutation p.A799T 0.14 tolerated(0.06) benign(0.041) TCGA-D8-A1XY-01 17 12032481 12032481 C G MAP2K4 Missense_Mutation p.P306R 0.46 deleterious(0) probably_damaging(1) TCGA-D8-A1XY-01 17 29220855 29220855 C T ATAD5 Missense_Mutation p.L1662F 0.05 tolerated(0.24) benign(0.109) TCGA-D8-A1XY-01 17 41346494 41346494 C T NBR1 Missense_Mutation p.S551F 0.10 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XY-01 17 7847523 7847523 C T CNTROB Nonsense_Mutation p.R510* 0.29 TCGA-D8-A1XY-01 17 9586182 9586182 G A USP43 Missense_Mutation p.R383H 0.06 tolerated(0.69) benign(0.009) TCGA-D8-A1XY-01 18 74668027 74668027 C T ZNF236 Silent p.A1665A 0.21 TCGA-D8-A1XY-01 19 19645891 19645891 G A YJEFN3 Missense_Mutation p.V123M 0.20 deleterious(0) probably_damaging(0.938) TCGA-D8-A1XY-01 19 51217199 51217199 G T SHANK1 Silent p.P216P 0.17 TCGA-D8-A1XY-01 19 51837454 51837454 G A VSIG10L Missense_Mutation p.R804C 0.23 tolerated(0.07) benign(0.037) TCGA-D8-A1XY-01 19 55246750 55246750 G T KIR3DL3 Missense_Mutation p.G327V 0.32 deleterious(0.02) benign(0.077) TCGA-D8-A1XY-01 1 245582982 245582982 G T KIF26B Silent p.S367S 0.70 TCGA-D8-A1XY-01 1 75037178 75037178 C T C1orf173 Missense_Mutation p.E1406K 0.51 deleterious(0.01) possibly_damaging(0.833) TCGA-D8-A1XY-01 20 46311847 46311847 C T SULF2 Missense_Mutation p.G319S 0.07 deleterious(0) probably_damaging(1) TCGA-D8-A1XY-01 21 47918525 47918525 C G DIP2A Missense_Mutation p.S145C 0.34 deleterious(0) probably_damaging(0.971) TCGA-D8-A1XY-01 2 167055875 167055875 G A SCN9A Silent p.V1747V 0.18 TCGA-D8-A1XY-01 2 216262532 216262532 C A FN1 Nonsense_Mutation p.E1130* 0.17 TCGA-D8-A1XY-01 2 228881454 228881454 C A SPHKAP Missense_Mutation p.R1372S 0.18 tolerated(0.59) benign(0.024) TCGA-D8-A1XY-01 2 61416190 61416190 G C USP34 Silent p.L3296L 0.22 TCGA-D8-A1XY-01 2 69472437 69472437 G A ANTXR1 Silent p.S505S 0.25 TCGA-D8-A1XY-01 3 11301339 11301339 A G HRH1 Missense_Mutation p.M206V 0.17 deleterious(0) probably_damaging(0.927) TCGA-D8-A1XY-01 3 134825375 134825375 G A EPHB1 Silent p.A297A 0.20 TCGA-D8-A1XY-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.40 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1XY-01 3 182810273 182810273 C T MCCC1 Missense_Mutation p.R66H 0.12 deleterious(0.02) benign(0.276) TCGA-D8-A1XY-01 3 193068973 193068974 AT - ATP13A5 Frame_Shift_Del p.Y208Cfs*36 0.20 TCGA-D8-A1XY-01 3 46560544 46560544 G A LRRC2 Missense_Mutation p.P359L 0.20 deleterious(0) probably_damaging(0.965) TCGA-D8-A1XY-01 4 115586882 115586883 AT - UGT8 Frame_Shift_Del p.I338Rfs*7 0.23 TCGA-D8-A1XY-01 5 110679796 110679796 A C CAMK4 Missense_Mutation p.K79T 0.16 deleterious(0) probably_damaging(0.983) TCGA-D8-A1XY-01 5 138264958 138264958 T A CTNNA1 Silent p.S641S 0.07 TCGA-D8-A1XY-01 5 39383203 39383203 G A DAB2 Silent p.F286F 0.34 TCGA-D8-A1XY-01 5 77511985 77511985 C T AP3B1 Missense_Mutation p.R227H 0.11 deleterious(0) probably_damaging(0.934) TCGA-D8-A1XY-01 7 141755462 141755462 G T MGAM Missense_Mutation p.R1140M 0.34 tolerated(0.07) benign(0.146) TCGA-D8-A1XY-01 7 4189088 4189088 G A SDK1 Missense_Mutation p.V1540I 0.28 tolerated(0.21) benign(0.084) TCGA-D8-A1XY-01 7 65439687 65439687 C T GUSB Missense_Mutation p.R357Q 0.38 deleterious(0) probably_damaging(0.992) TCGA-D8-A1XY-01 7 91570457 91570457 C T AKAP9 Missense_Mutation p.A15V 0.10 probably_damaging(0.934) TCGA-D8-A1XY-01 8 42294888 42294888 C T SLC20A2 Missense_Mutation p.R381H 0.08 deleterious(0) probably_damaging(0.99) TCGA-D8-A1XY-01 9 115806351 115806351 T A ZFP37 Missense_Mutation p.I183F 0.23 tolerated(0.28) benign(0.019) TCGA-D8-A1XY-01 9 138378571 138378571 C T PPP1R26 Missense_Mutation p.R739W 0.50 deleterious(0.01) probably_damaging(0.942) TCGA-D8-A1XY-01 9 140672412 140672412 G A EHMT1 Silent p.T699T 0.36 TCGA-D8-A1XY-01 X 38156690 38156690 A G RPGR Missense_Mutation p.S421P 0.14 benign(0.028) TCGA-D8-A1XY-01 X 48761929 48761929 G A SLC35A2 Intron 0.19 TCGA-D8-A1XZ-01 10 31809597 31809597 A G ZEB1 Missense_Mutation p.N446S 0.47 tolerated(0.78) benign(0.003) TCGA-D8-A1XZ-01 11 101359736 101359736 C T TRPC6 Missense_Mutation p.V409M 0.20 tolerated(0.15) probably_damaging(0.996) TCGA-D8-A1XZ-01 11 117097898 117097898 G A PCSK7 Silent p.G248G 0.44 TCGA-D8-A1XZ-01 11 30926690 30926690 C A DCDC1 Missense_Mutation p.A1376S 0.20 deleterious(0.01) possibly_damaging(0.567) TCGA-D8-A1XZ-01 11 33368958 33368958 C G HIPK3 Missense_Mutation p.Q673E 0.40 deleterious(0) probably_damaging(0.977) TCGA-D8-A1XZ-01 11 55579837 55579837 G C OR5L1 Missense_Mutation p.E299Q 0.19 tolerated(0.07) benign(0.128) TCGA-D8-A1XZ-01 11 6891847 6891847 C G OR10A2 Missense_Mutation p.L288V 0.14 tolerated(0.07) benign(0.04) TCGA-D8-A1XZ-01 12 119937943 119937943 G A CCDC60 Silent p.Q206Q 0.22 TCGA-D8-A1XZ-01 12 120287989 120287989 G T CIT Missense_Mutation p.H169N 0.37 tolerated(1) benign(0) TCGA-D8-A1XZ-01 12 13768551 13768551 C A GRIN2B Missense_Mutation p.G459V 0.49 deleterious(0) probably_damaging(1) TCGA-D8-A1XZ-01 12 40716258 40716258 G C LRRK2 Missense_Mutation p.G1819R 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A1XZ-01 12 41418956 41418956 G A CNTN1 Missense_Mutation p.R843Q 0.30 deleterious(0.02) probably_damaging(0.964) TCGA-D8-A1XZ-01 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.32 tolerated(1) benign(0.007) TCGA-D8-A1XZ-01 13 114150035 114150035 C T TMCO3 Missense_Mutation p.R47W 0.48 deleterious(0.01) possibly_damaging(0.462) TCGA-D8-A1XZ-01 13 31722195 31722195 G A HSPH1 Missense_Mutation p.P427S 0.31 deleterious(0) benign(0.036) TCGA-D8-A1XZ-01 13 42869866 42869884 TGCTCATATACAGGTATGG - AKAP11 Splice_Site p.X69_splice 0.12 TCGA-D8-A1XZ-01 13 60348934 60348934 C T DIAPH3 Missense_Mutation p.D1063N 0.40 deleterious(0) probably_damaging(0.993) TCGA-D8-A1XZ-01 13 79945156 79945161 ACTTCG - RBM26 In_Frame_Del p.R185_S186del 0.12 TCGA-D8-A1XZ-01 14 100793638 100793638 C T SLC25A47 Silent p.Y86Y 0.08 TCGA-D8-A1XZ-01 14 101349520 101349520 G A RTL1 Missense_Mutation p.R536C 0.69 deleterious(0.01) benign(0.203) TCGA-D8-A1XZ-01 14 101522563 101522563 C T MIR323B RNA 0.07 TCGA-D8-A1XZ-01 14 22591393 22591393 G T TRAV26-1 5'UTR 0.24 TCGA-D8-A1XZ-01 14 24788604 24788604 G C ADCY4 Missense_Mutation p.I924M 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A1XZ-01 14 88962792 88962792 C T PTPN21 Silent p.A299A 0.15 TCGA-D8-A1XZ-01 14 93118595 93118595 A T RIN3 Missense_Mutation p.S401C 0.19 tolerated(0.14) possibly_damaging(0.887) TCGA-D8-A1XZ-01 15 31334372 31334372 G A TRPM1 Silent p.D640D 0.13 TCGA-D8-A1XZ-01 15 50152542 50152542 G A ATP8B4 Missense_Mutation p.T1143I 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1XZ-01 16 31391336 31391336 G A ITGAX Missense_Mutation p.A1004T 0.17 tolerated(0.78) benign(0.003) TCGA-D8-A1XZ-01 16 49669753 49669753 C T ZNF423 Missense_Mutation p.V1104M 0.30 tolerated(0.24) benign(0.003) TCGA-D8-A1XZ-01 17 18881643 18881643 G A FAM83G Missense_Mutation p.R446C 0.62 deleterious(0) probably_damaging(1) TCGA-D8-A1XZ-01 17 48917816 48917816 C T WFIKKN2 Silent p.P389P 0.11 TCGA-D8-A1XZ-01 17 51900359 51900359 G A KIF2B 5'UTR 0.09 TCGA-D8-A1XZ-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.71 TCGA-D8-A1XZ-01 17 8139245 8139245 A T CTC1 Silent p.A370A 0.14 TCGA-D8-A1XZ-01 18 12325960 12325960 G A TUBB6 Missense_Mutation p.R391H 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.614) TCGA-D8-A1XZ-01 18 48255548 48255548 C T MAPK4 Missense_Mutation p.S363L 0.32 deleterious(0) probably_damaging(0.978) TCGA-D8-A1XZ-01 18 59221741 59221741 C T CDH20 Missense_Mutation p.P740L 0.29 deleterious(0.03) probably_damaging(1) TCGA-D8-A1XZ-01 18 74624298 74624298 T C ZNF236 Silent p.S966S 0.10 TCGA-D8-A1XZ-01 19 14031724 14031724 G C CC2D1A Missense_Mutation p.D544H 0.18 deleterious(0) probably_damaging(0.97) TCGA-D8-A1XZ-01 19 14164464 14164464 C T PALM3 Missense_Mutation p.A659T 0.07 tolerated(0.09) possibly_damaging(0.725) TCGA-D8-A1XZ-01 19 1754710 1754710 G A ONECUT3 Missense_Mutation p.C350Y 0.67 deleterious(0) probably_damaging(0.961) TCGA-D8-A1XZ-01 19 19407828 19407828 C A SUGP1 Missense_Mutation p.D405Y 0.50 tolerated(0.43) benign(0.009) TCGA-D8-A1XZ-01 19 35842949 35842949 C T FFAR1 Silent p.N165N 0.12 TCGA-D8-A1XZ-01 1 108507315 108507317 CTC - VAV3 In_Frame_Del p.E59del 0.42 TCGA-D8-A1XZ-01 1 118166421 118166421 C T FAM46C Missense_Mutation p.R311C 0.04 deleterious(0) possibly_damaging(0.873) TCGA-D8-A1XZ-01 1 197326056 197326056 C A CRB1 Missense_Mutation p.Q362K 0.39 tolerated(0.29) benign(0.063) TCGA-D8-A1XZ-01 1 201618120 201618120 G A NAV1 Silent p.E108E 0.14 TCGA-D8-A1XZ-01 1 220791767 220791767 C T MARK1 Missense_Mutation p.A223V 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A1XZ-01 1 24857756 24857756 C T RCAN3 Nonsense_Mutation p.Q82* 0.50 TCGA-D8-A1XZ-01 1 248685642 248685642 C T OR2G6 Missense_Mutation p.A232V 0.38 tolerated(0.11) benign(0.009) TCGA-D8-A1XZ-01 1 35250679 35250679 C T GJB3 Missense_Mutation p.R106C 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-D8-A1XZ-01 1 41512122 41512122 G C SCMH1 Silent p.L475L 0.22 TCGA-D8-A1XZ-01 1 44363942 44363942 G C ST3GAL3 Missense_Mutation p.E214Q 0.18 tolerated(0.06) possibly_damaging(0.617) TCGA-D8-A1XZ-01 1 5927909 5927909 C G NPHP4 Silent p.L1121L 0.16 TCGA-D8-A1XZ-01 1 6292163 6292163 G C ICMT Silent p.T157T 0.08 TCGA-D8-A1XZ-01 1 63920577 63920577 T A ITGB3BP Missense_Mutation p.N145I 0.09 deleterious(0) probably_damaging(0.939) TCGA-D8-A1XZ-01 20 34242060 34242060 C T RBM12 Missense_Mutation p.M395I 0.12 tolerated(0.56) benign(0.016) TCGA-D8-A1XZ-01 20 47990860 47990860 C T KCNB1 Missense_Mutation p.V413I 0.39 deleterious(0) probably_damaging(0.994) TCGA-D8-A1XZ-01 20 58519040 58519040 G T FAM217B Missense_Mutation p.K14N 0.27 deleterious(0) probably_damaging(0.945) TCGA-D8-A1XZ-01 22 30733776 30733776 C T SF3A1 Silent p.P618P 0.34 TCGA-D8-A1XZ-01 22 32334085 32334085 A C C22orf24 5'UTR 0.15 TCGA-D8-A1XZ-01 22 41523564 41523564 C T EP300 Missense_Mutation p.A327V 0.23 unknown(0) TCGA-D8-A1XZ-01 2 107459729 107459729 C T ST6GAL2 Silent p.G235G 0.30 TCGA-D8-A1XZ-01 2 138208561 138208561 C T THSD7B Nonsense_Mutation p.R1036* 0.10 TCGA-D8-A1XZ-01 2 141081533 141081533 A G LRP1B Missense_Mutation p.V4148A 0.32 benign(0.153) TCGA-D8-A1XZ-01 2 179594238 179594238 G A TTN Silent p.D6215D 0.51 TCGA-D8-A1XZ-01 2 191899324 191899324 C G STAT4 Splice_Site p.X524_splice 0.05 TCGA-D8-A1XZ-01 3 123038594 123038594 C T ADCY5 Missense_Mutation p.S728N 0.47 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XZ-01 3 129251571 129251571 G A RHO Missense_Mutation p.A298T 0.16 deleterious(0) benign(0.064) TCGA-D8-A1XZ-01 3 130116894 130116894 C T COL6A5 Silent p.D1310D 0.26 TCGA-D8-A1XZ-01 4 122085228 122085228 G A TNIP3 Missense_Mutation p.T95M 0.04 tolerated(0.13) benign(0.031) TCGA-D8-A1XZ-01 4 37448786 37448786 C T KIAA1239 Missense_Mutation p.R1726W 0.21 deleterious_low_confidence(0) possibly_damaging(0.644) TCGA-D8-A1XZ-01 4 89671660 89671660 G A FAM13A Missense_Mutation p.R619W 0.46 deleterious(0) probably_damaging(1) TCGA-D8-A1XZ-01 5 178454518 178454518 C T ZNF879 Silent p.D26D 0.03 TCGA-D8-A1XZ-01 5 178540927 178540927 G C ADAMTS2 Missense_Mutation p.Q1193E 0.05 deleterious_low_confidence(0.01) benign(0.097) TCGA-D8-A1XZ-01 5 26881405 26881405 G A CDH9 Missense_Mutation p.T737M 0.31 deleterious(0) possibly_damaging(0.873) TCGA-D8-A1XZ-01 5 3601145 3601145 G A IRX1 Silent p.P478P 0.14 TCGA-D8-A1XZ-01 5 72980669 72980669 C T ARHGEF28 5'UTR 0.33 TCGA-D8-A1XZ-01 6 128030883 128030883 G A THEMIS 3'UTR 0.53 TCGA-D8-A1XZ-01 6 151687962 151687962 A T ZBTB2 Missense_Mutation p.M80K 0.45 deleterious(0) probably_damaging(0.969) TCGA-D8-A1XZ-01 6 31778018 31778018 C G HSPA1L Missense_Mutation p.E578Q 0.21 tolerated_low_confidence(0.09) benign(0.212) TCGA-D8-A1XZ-01 6 53784398 53784398 C T LRRC1 Silent p.D403D 0.26 TCGA-D8-A1XZ-01 6 74171766 74171766 G T MTO1 Silent p.L63L 0.27 TCGA-D8-A1XZ-01 6 80198927 80198927 G A LCA5 Nonsense_Mutation p.Q369* 0.19 TCGA-D8-A1XZ-01 7 38431512 38431512 G A AMPH Missense_Mutation p.A572V 0.33 tolerated(0.59) benign(0) TCGA-D8-A1XZ-01 8 69021753 69021753 T A PREX2 Missense_Mutation p.L1014Q 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1XZ-01 8 89053719 89053719 G A MMP16 Silent p.Y598Y 0.11 TCGA-D8-A1XZ-01 8 97620629 97620629 G A SDC2 Missense_Mutation p.E125K 0.13 tolerated(0.83) benign(0.419) TCGA-D8-A1XZ-01 9 140901231 140901231 G C CACNA1B Missense_Mutation p.E663Q 0.05 deleterious(0) benign(0.154) TCGA-D8-A1XZ-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.20 TCGA-D8-A1XZ-01 9 21077756 21077756 C T IFNB1 Missense_Mutation p.C38Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-D8-A1XZ-01 9 40772640 40772640 C A ZNF658 Nonsense_Mutation p.E879* 0.06 TCGA-D8-A1XZ-01 9 88694123 88694123 C T GOLM1 Missense_Mutation p.R38Q 0.25 deleterious(0) possibly_damaging(0.776) TCGA-D8-A1XZ-01 X 105855472 105855472 G A CXorf57 Missense_Mutation p.M54I 0.23 tolerated(0.64) benign(0) TCGA-D8-A1XZ-01 X 144906400 144906400 C T SLITRK2 Silent p.H819H 0.17 TCGA-D8-A1XZ-01 X 17744275 17744275 G C NHS Silent p.V662V 0.13 TCGA-D8-A1XZ-01 X 41012240 41012240 C T USP9X Silent p.D601D 0.19 TCGA-D8-A1XZ-01 X 46434009 46434009 G A CHST7 Missense_Mutation p.A215T 0.17 tolerated(0.56) benign(0.004) TCGA-D8-A1XZ-01 X 55170210 55170211 TT - FAM104B 3'Flank 0.15 TCGA-D8-A1XZ-01 X 70832732 70832732 C T ACRC Missense_Mutation p.S659L 0.21 unknown(0) TCGA-D8-A1XZ-01 X 79278719 79278719 G T TBX22 Missense_Mutation p.M112I 0.29 deleterious(0) probably_damaging(0.998) TCGA-D8-A1Y0-01 10 124352003 124352003 G T DMBT1 Missense_Mutation p.D798Y 0.08 deleterious(0) unknown(0) TCGA-D8-A1Y0-01 10 1279721 1279721 T C ADARB2 Silent p.R476R 0.20 TCGA-D8-A1Y0-01 10 38652501 38652501 A T HSD17B7P2 RNA 0.32 TCGA-D8-A1Y0-01 10 63759999 63759999 A T ARID5B Missense_Mutation p.R218W 0.33 deleterious(0.01) benign(0.143) TCGA-D8-A1Y0-01 11 65384797 65384797 G C PCNXL3 Missense_Mutation p.V140L 0.29 tolerated(0.58) benign(0.002) TCGA-D8-A1Y0-01 11 67377893 67377893 G C NDUFV1 Missense_Mutation p.K184N 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-D8-A1Y0-01 11 69625283 69625283 G A FGF3 Silent p.R170R 0.18 TCGA-D8-A1Y0-01 11 71259693 71259693 C G KRTAP5-9 5'UTR 0.29 TCGA-D8-A1Y0-01 11 75298409 75298409 C T MAP6 Missense_Mutation p.V713M 0.26 tolerated_low_confidence(0.07) benign(0.034) TCGA-D8-A1Y0-01 11 76062798 76062798 G A PRKRIR Nonsense_Mutation p.R466* 0.47 TCGA-D8-A1Y0-01 12 123798175 123798175 A T SBNO1 Missense_Mutation p.F1071Y 0.23 deleterious(0) probably_damaging(0.965) TCGA-D8-A1Y0-01 12 43833862 43833862 G A ADAMTS20 Silent p.D767D 0.28 TCGA-D8-A1Y0-01 12 6666267 6666267 G C NOP2 Silent p.P810P 0.20 TCGA-D8-A1Y0-01 12 7014914 7014914 C A LRRC23 Missense_Mutation p.F39L 0.18 tolerated(0.67) benign(0.001) TCGA-D8-A1Y0-01 13 96230312 96230312 G A CLDN10 3'UTR 0.43 TCGA-D8-A1Y0-01 14 31792818 31792818 T A HEATR5A Missense_Mutation p.H1247L 0.27 deleterious(0) probably_damaging(0.99) TCGA-D8-A1Y0-01 14 50605424 50605424 T C SOS2 Missense_Mutation p.N955S 0.31 deleterious(0.05) possibly_damaging(0.631) TCGA-D8-A1Y0-01 14 62235358 62235358 C T SNAPC1 Missense_Mutation p.S145L 0.16 deleterious(0.03) possibly_damaging(0.869) TCGA-D8-A1Y0-01 16 18544464 18544464 G T NOMO2 Missense_Mutation p.P420T 0.18 deleterious(0) probably_damaging(0.989) TCGA-D8-A1Y0-01 16 23711894 23711894 G T ERN2 Silent p.P545P 0.16 TCGA-D8-A1Y0-01 16 24202408 24202408 A T PRKCB Intron 0.14 TCGA-D8-A1Y0-01 16 4942091 4942091 C T PPL Missense_Mutation p.D592N 0.19 tolerated(0.73) benign(0.033) TCGA-D8-A1Y0-01 17 10298721 10298721 A T MYH8 Missense_Mutation p.I1564N 0.36 deleterious(0.01) possibly_damaging(0.467) TCGA-D8-A1Y0-01 17 30536424 30536424 G C RHOT1 Missense_Mutation p.E599Q 0.12 tolerated_low_confidence(0.55) benign(0.002) TCGA-D8-A1Y0-01 17 37933941 37933941 C A IKZF3 Silent p.V263V 0.07 TCGA-D8-A1Y0-01 17 56801450 56801450 C A RAD51C Missense_Mutation p.D318E 0.24 tolerated(0.93) benign(0.002) TCGA-D8-A1Y0-01 19 17887068 17887068 C T FCHO1 Missense_Mutation p.R399C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1Y0-01 19 18679394 18679394 A T KXD1 Missense_Mutation p.I162F 0.38 tolerated_low_confidence(0.11) benign(0.1) TCGA-D8-A1Y0-01 19 2852854 2852854 C G ZNF555 Missense_Mutation p.A264G 0.28 deleterious(0.03) benign(0.298) TCGA-D8-A1Y0-01 19 42492241 42492241 G A ATP1A3 Silent p.N81N 0.28 TCGA-D8-A1Y0-01 19 42729552 42729552 G A ZNF526 Missense_Mutation p.E333K 0.21 tolerated(0.23) probably_damaging(0.997) TCGA-D8-A1Y0-01 19 45662102 45662102 G A NKPD1 Silent p.V116V 0.29 TCGA-D8-A1Y0-01 19 47124648 47124648 C A PTGIR Silent p.S350S 0.27 TCGA-D8-A1Y0-01 1 10163139 10163139 A G UBE4B Missense_Mutation p.N190S 0.38 tolerated(0.11) unknown(0) TCGA-D8-A1Y0-01 1 110201636 110201636 T G GSTM4 Missense_Mutation p.D157E 0.20 deleterious(0) probably_damaging(0.979) TCGA-D8-A1Y0-01 1 110201637 110201637 T A GSTM4 Missense_Mutation p.F158I 0.18 deleterious(0.01) possibly_damaging(0.879) TCGA-D8-A1Y0-01 1 11097769 11097792 GTCTCGCAAAAGATGGAGAAGCTG - MASP2 In_Frame_Del p.S323_T330del 0.15 TCGA-D8-A1Y0-01 1 11187116 11187116 C A MTOR Missense_Mutation p.W2101L 0.38 deleterious(0) probably_damaging(0.997) TCGA-D8-A1Y0-01 1 113616189 113616189 T A LRIG2 Missense_Mutation p.L54Q 0.25 deleterious(0) possibly_damaging(0.899) TCGA-D8-A1Y0-01 1 157490895 157490895 C G FCRL5 Silent p.L809L 0.12 TCGA-D8-A1Y0-01 1 181685255 181685255 C A CACNA1E Silent p.I435I 0.26 TCGA-D8-A1Y0-01 1 245851145 245851145 C T KIF26B Silent p.G1620G 0.19 TCGA-D8-A1Y0-01 1 42049672 42049672 T C HIVEP3 Missense_Mutation p.E266G 0.30 probably_damaging(0.997) TCGA-D8-A1Y0-01 1 93602437 93602437 C G MTF2 Silent p.L545L 0.25 TCGA-D8-A1Y0-01 20 25481635 25481635 C G NINL Missense_Mutation p.E291D 0.29 deleterious(0) benign(0.263) TCGA-D8-A1Y0-01 20 34091216 34091216 G T CEP250 Missense_Mutation p.Q1673H 0.76 probably_damaging(0.999) TCGA-D8-A1Y0-01 20 44238841 44238841 G C WFDC9 5'UTR 0.29 TCGA-D8-A1Y0-01 20 60581738 60581738 G A TAF4 Missense_Mutation p.P684L 0.21 possibly_damaging(0.462) TCGA-D8-A1Y0-01 20 60714888 60714888 C T PSMA7 Silent p.E99E 0.13 TCGA-D8-A1Y0-01 21 43645822 43645822 G A ABCG1 Silent p.S28S 0.51 TCGA-D8-A1Y0-01 21 43732327 43732327 G A TFF3 3'UTR 0.18 TCGA-D8-A1Y0-01 2 198950898 198950898 T A PLCL1 Missense_Mutation p.I886N 0.29 deleterious(0.01) benign(0.106) TCGA-D8-A1Y0-01 2 26739336 26739336 G A OTOF Silent p.L153L 0.35 TCGA-D8-A1Y0-01 2 69569326 69569326 C G GFPT1 Missense_Mutation p.L387F 0.26 tolerated(0.08) possibly_damaging(0.753) TCGA-D8-A1Y0-01 3 13364839 13364839 C T NUP210 Missense_Mutation p.A1580T 0.21 tolerated(1) benign(0.001) TCGA-D8-A1Y0-01 3 40528692 40528692 C T ZNF619 Missense_Mutation p.P271S 0.31 tolerated(0.15) benign(0.067) TCGA-D8-A1Y0-01 3 43121534 43121534 C G POMGNT2 Missense_Mutation p.V464L 0.37 tolerated(0.44) benign(0.062) TCGA-D8-A1Y0-01 4 100003129 100003129 C T ADH5 Missense_Mutation p.A85T 0.29 tolerated(0.06) benign(0.001) TCGA-D8-A1Y0-01 4 10446040 10446040 G C ZNF518B Missense_Mutation p.S638C 0.30 deleterious(0) probably_damaging(0.997) TCGA-D8-A1Y0-01 4 120213924 120213924 A T USP53 Missense_Mutation p.K927M 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D8-A1Y0-01 4 186545132 186545132 T C SORBS2 Missense_Mutation p.Y580C 0.22 deleterious(0) probably_damaging(0.999) TCGA-D8-A1Y0-01 4 52951104 52951104 G T SPATA18 Missense_Mutation p.S501I 0.22 deleterious(0) benign(0.158) TCGA-D8-A1Y0-01 5 133997101 133997101 C A SEC24A Silent p.A130A 0.38 TCGA-D8-A1Y0-01 5 140230345 140230345 G T PCDHA9 Missense_Mutation p.R755S 0.21 tolerated_low_confidence(0.19) benign(0.027) TCGA-D8-A1Y0-01 5 140580879 140580879 G C PCDHB11 Missense_Mutation p.G511A 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1Y0-01 5 205708 205708 C T CCDC127 Missense_Mutation p.E163K 0.08 deleterious(0.01) possibly_damaging(0.601) TCGA-D8-A1Y0-01 5 36608580 36608580 C T SLC1A3 Nonsense_Mutation p.Q19* 0.18 TCGA-D8-A1Y0-01 5 94922376 94922391 AGAAATTAAGAATATT - ARSK Frame_Shift_Del p.I272Hfs*24 0.63 TCGA-D8-A1Y0-01 5 95242412 95242412 T C ELL2 Missense_Mutation p.M186V 0.51 tolerated(0.64) benign(0.004) TCGA-D8-A1Y0-01 7 142568723 142568723 G A EPHB6 3'UTR 0.26 TCGA-D8-A1Y0-01 7 5348572 5348572 G T TNRC18 Missense_Mutation p.D2878E 0.22 unknown(0) TCGA-D8-A1Y0-01 7 65751548 65751548 T C TPST1 Missense_Mutation p.L299P 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A1Y0-01 7 89933315 89933315 G T C7orf63 Nonsense_Mutation p.E695* 0.21 TCGA-D8-A1Y0-01 8 130762815 130762815 A G GSDMC Silent p.N315N 0.12 TCGA-D8-A1Y0-01 8 133083697 133083697 A C HHLA1 Silent p.A489A 0.24 TCGA-D8-A1Y0-01 8 144995478 144995478 C A PLEC Missense_Mutation p.E2974D 0.09 benign(0.057) TCGA-D8-A1Y0-01 8 145006612 145006612 T C PLEC Missense_Mutation p.S782G 0.19 benign(0.328) TCGA-D8-A1Y0-01 8 145616600 145616600 A C ADCK5 Missense_Mutation p.I242L 0.09 tolerated(0.32) benign(0.019) TCGA-D8-A1Y0-01 8 73848355 73848355 A G KCNB2 Silent p.S255S 0.17 TCGA-D8-A1Y0-01 9 101006299 101006299 G C TBC1D2 Silent p.L208L 0.40 TCGA-D8-A1Y0-01 9 136913577 136913577 C T BRD3 Splice_Site p.X239_splice 0.21 TCGA-D8-A1Y0-01 9 40774928 40774928 T G ZNF658 Missense_Mutation p.Q116P 0.17 deleterious(0.03) benign(0.086) TCGA-D8-A1Y0-01 9 97848305 97848305 C T C9orf3 Intron 0.32 TCGA-D8-A1Y1-01 10 118351338 118351338 C T PNLIPRP1 Silent p.G35G 0.52 TCGA-D8-A1Y1-01 10 123844356 123844356 C - TACC2 Frame_Shift_Del p.Q783Rfs*32 0.52 TCGA-D8-A1Y1-01 10 13169759 13169759 C T OPTN Silent p.D419D 0.12 TCGA-D8-A1Y1-01 10 135233665 135233665 C A MTG1 Missense_Mutation p.P334H 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A1Y1-01 10 27702096 27702096 T - PTCHD3 Frame_Shift_Del p.I362Lfs*3 0.17 TCGA-D8-A1Y1-01 10 32311826 32311826 T - KIF5B Frame_Shift_Del p.M622Wfs*8 0.30 TCGA-D8-A1Y1-01 10 7218087 7218087 G A SFMBT2 Missense_Mutation p.R617W 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 10 94109244 94109244 C T MARCH5 Missense_Mutation p.R170C 0.25 deleterious(0.02) probably_damaging(0.981) TCGA-D8-A1Y1-01 11 113935219 113935219 C T ZBTB16 Silent p.S399S 0.39 TCGA-D8-A1Y1-01 11 118391565 118391565 A - KMT2A Frame_Shift_Del p.K3828Rfs*31 0.23 TCGA-D8-A1Y1-01 11 124120653 124120653 T C OR8G1 Silent p.I77I 0.13 TCGA-D8-A1Y1-01 11 124749424 124749424 G A ROBO3 Missense_Mutation p.R1250Q 0.12 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-D8-A1Y1-01 11 126318906 126318906 T C KIRREL3 Missense_Mutation p.Y332C 0.12 deleterious(0) probably_damaging(0.995) TCGA-D8-A1Y1-01 11 128843228 128843228 G A ARHGAP32 Missense_Mutation p.A1044V 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D8-A1Y1-01 11 134244521 134244521 T C GLB1L2 Missense_Mutation p.I578T 0.20 deleterious(0) possibly_damaging(0.707) TCGA-D8-A1Y1-01 11 1857151 1857151 G - SYT8 Frame_Shift_Del p.D114Mfs*25 0.32 TCGA-D8-A1Y1-01 11 44289156 44289156 C T ALX4 Missense_Mutation p.R265Q 0.21 deleterious(0) probably_damaging(0.988) TCGA-D8-A1Y1-01 11 47599060 47599060 C A KBTBD4 Silent p.T180T 0.24 TCGA-D8-A1Y1-01 11 4967531 4967531 C T OR51A4 Missense_Mutation p.R267Q 0.10 tolerated(0.08) benign(0.015) TCGA-D8-A1Y1-01 11 57373624 57373624 G A SERPING1 Missense_Mutation p.R276Q 0.30 tolerated(1) benign(0.002) TCGA-D8-A1Y1-01 11 61607877 61607877 C T FADS2 Silent p.H130H 0.20 TCGA-D8-A1Y1-01 11 63670145 63670145 G A MARK2 Missense_Mutation p.R436Q 0.28 tolerated(0.79) benign(0.193) TCGA-D8-A1Y1-01 11 71729889 71729889 C T NUMA1 Missense_Mutation p.R241H 0.37 benign(0.043) TCGA-D8-A1Y1-01 11 78368952 78368952 A - TENM4 3'UTR 0.31 TCGA-D8-A1Y1-01 11 83195172 83195172 G A DLG2 Nonsense_Mutation p.R765* 0.14 TCGA-D8-A1Y1-01 11 86152307 86152307 C T ME3 3'UTR 0.07 TCGA-D8-A1Y1-01 12 109311864 109311864 C T SVOP Silent p.A370A 0.11 TCGA-D8-A1Y1-01 12 120593144 120593144 C A GCN1L1 Missense_Mutation p.Q1177H 0.10 possibly_damaging(0.847) TCGA-D8-A1Y1-01 12 122413586 122413586 G A WDR66 Missense_Mutation p.E1001K 0.53 tolerated(0.07) benign(0.086) TCGA-D8-A1Y1-01 12 122691337 122691337 A G B3GNT4 Missense_Mutation p.D180G 0.27 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 12 128899747 128899747 C T TMEM132C Missense_Mutation p.R186W 0.23 deleterious(0) probably_damaging(0.982) TCGA-D8-A1Y1-01 12 132474593 132474593 C T EP400 Missense_Mutation p.R832W 0.24 unknown(0) TCGA-D8-A1Y1-01 12 133324459 133324459 G A ANKLE2 Missense_Mutation p.R397C 0.23 tolerated(0.26) benign(0.001) TCGA-D8-A1Y1-01 12 13724845 13724845 G A GRIN2B Silent p.N688N 0.23 TCGA-D8-A1Y1-01 12 22677460 22677460 G A C2CD5 Missense_Mutation p.R183C 0.12 deleterious(0) probably_damaging(0.957) TCGA-D8-A1Y1-01 12 2929346 2929346 G A ITFG2 Silent p.L167L 0.37 TCGA-D8-A1Y1-01 12 40114850 40114850 G A C12orf40 Missense_Mutation p.V586I 0.10 tolerated(1) benign(0) TCGA-D8-A1Y1-01 12 52631316 52631316 G A KRT7 Missense_Mutation p.R187H 0.18 deleterious(0.02) benign(0.081) TCGA-D8-A1Y1-01 12 57323335 57323335 C T SDR9C7 Missense_Mutation p.R188H 0.16 deleterious(0.02) benign(0.209) TCGA-D8-A1Y1-01 12 66932939 66932939 G A GRIP1 Missense_Mutation p.R113C 0.28 deleterious(0) probably_damaging(0.994) TCGA-D8-A1Y1-01 12 72335393 72335393 C T TPH2 Silent p.D45D 0.19 TCGA-D8-A1Y1-01 13 100181813 100181814 - A TM9SF2 Frame_Shift_Ins p.S145Kfs*14 0.12 TCGA-D8-A1Y1-01 13 20315754 20315754 C T PSPC1 Missense_Mutation p.E335K 0.66 deleterious(0.03) probably_damaging(0.998) TCGA-D8-A1Y1-01 13 21950753 21950753 A G ZDHHC20 3'UTR 0.30 TCGA-D8-A1Y1-01 13 52539048 52539048 G A ATP7B Missense_Mutation p.P610L 0.26 deleterious(0.02) benign(0.386) TCGA-D8-A1Y1-01 13 96443192 96443192 G A DNAJC3 Missense_Mutation p.G475S 0.25 tolerated(0.35) benign(0.007) TCGA-D8-A1Y1-01 14 106307559 106307560 CT - IGHD Frame_Shift_Del p.E160Vfs*36 0.46 TCGA-D8-A1Y1-01 14 20528495 20528495 G A OR4L1 Missense_Mutation p.V98M 0.09 tolerated(1) benign(0) TCGA-D8-A1Y1-01 14 21789487 21789487 G A RPGRIP1 Missense_Mutation p.A513T 0.23 deleterious(0) possibly_damaging(0.905) TCGA-D8-A1Y1-01 14 35568559 35568559 G T PPP2R3C Missense_Mutation p.P202H 0.16 deleterious(0) probably_damaging(0.998) TCGA-D8-A1Y1-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.29 TCGA-D8-A1Y1-01 14 91780360 91780360 C T CCDC88C Silent p.T600T 0.23 TCGA-D8-A1Y1-01 15 102345983 102345983 C T OR4F6 Missense_Mutation p.R21W 0.22 tolerated_low_confidence(1) benign(0) TCGA-D8-A1Y1-01 15 31323186 31323186 G A TRPM1 Missense_Mutation p.L1060F 0.26 deleterious(0.01) possibly_damaging(0.686) TCGA-D8-A1Y1-01 15 44094007 44094007 C T HYPK 3'UTR 0.21 TCGA-D8-A1Y1-01 15 63908694 63908694 C T HERC1 Missense_Mutation p.V4626M 0.12 probably_damaging(0.999) TCGA-D8-A1Y1-01 16 12758637 12758637 T G CPPED1 3'UTR 0.19 TCGA-D8-A1Y1-01 16 1307051 1307051 G A TPSD1 Missense_Mutation p.V170M 0.46 tolerated(0.08) benign(0.412) TCGA-D8-A1Y1-01 16 1869958 1869958 G A HAGH Silent p.Y124Y 0.15 TCGA-D8-A1Y1-01 16 20487095 20487095 G A ACSM2A Silent p.T366T 0.14 TCGA-D8-A1Y1-01 16 30664308 30664308 C T PRR14 Nonsense_Mutation p.R130* 0.17 TCGA-D8-A1Y1-01 16 3779691 3779691 C T CREBBP Missense_Mutation p.R1786H 0.15 unknown(0) TCGA-D8-A1Y1-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.18 TCGA-D8-A1Y1-01 16 4562821 4562821 G A CDIP1 Silent p.F162F 0.17 TCGA-D8-A1Y1-01 16 52484428 52484428 G A TOX3 Missense_Mutation p.R147W 0.28 deleterious(0.05) possibly_damaging(0.723) TCGA-D8-A1Y1-01 16 56667262 56667262 C T MT1M Silent p.C13C 0.32 TCGA-D8-A1Y1-01 16 66599895 66599895 A - CKLF Frame_Shift_Del p.E150Kfs*? 0.36 TCGA-D8-A1Y1-01 16 67696412 67696412 G C PARD6A Silent p.G301G 0.25 TCGA-D8-A1Y1-01 16 68856129 68856129 G T CDH1 Splice_Site p.X646_splice 0.57 TCGA-D8-A1Y1-01 16 72830903 72830904 CT - ZFHX3 Frame_Shift_Del p.R1893Gfs*35 0.58 TCGA-D8-A1Y1-01 17 10544483 10544483 C T MYH3 Missense_Mutation p.R695Q 0.33 deleterious(0.01) possibly_damaging(0.65) TCGA-D8-A1Y1-01 17 11783516 11783516 C T DNAH9 Nonsense_Mutation p.R3534* 0.28 TCGA-D8-A1Y1-01 17 12011109 12011109 T - MAP2K4 Frame_Shift_Del p.D173Tfs*24 0.55 TCGA-D8-A1Y1-01 17 17106258 17106258 G A PLD6 Silent p.Y194Y 0.37 TCGA-D8-A1Y1-01 17 27049570 27049570 G A RPL23A Intron 0.20 TCGA-D8-A1Y1-01 17 27216012 27216012 C T FLOT2 Missense_Mutation p.V28M 0.33 deleterious(0.02) benign(0.269) TCGA-D8-A1Y1-01 17 27420379 27420379 G A MYO18A Missense_Mutation p.R1630W 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 17 28645921 28645922 CA - TMIGD1 Frame_Shift_Del p.V217Gfs*25 0.34 TCGA-D8-A1Y1-01 17 36495389 36495389 C T GPR179 Missense_Mutation p.V272I 0.11 tolerated(0.52) benign(0.003) TCGA-D8-A1Y1-01 17 37565802 37565802 T C MED1 Missense_Mutation p.D891G 0.07 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D8-A1Y1-01 17 40134299 40134299 C T DNAJC7 Missense_Mutation p.R402Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-D8-A1Y1-01 17 41006560 41006560 C T AOC3 Missense_Mutation p.R566W 0.56 deleterious(0) possibly_damaging(0.612) TCGA-D8-A1Y1-01 17 41738729 41738729 C T MEOX1 Silent p.A58A 0.19 TCGA-D8-A1Y1-01 17 42287046 42287046 A G UBTF Missense_Mutation p.M561T 0.20 tolerated(0.31) benign(0.138) TCGA-D8-A1Y1-01 17 44626601 44626601 A G LRRC37A2 Missense_Mutation p.S1366G 0.07 deleterious(0.03) benign(0.444) TCGA-D8-A1Y1-01 17 56276490 56276490 C T EPX Missense_Mutation p.R404C 0.23 deleterious(0.02) benign(0.052) TCGA-D8-A1Y1-01 17 61396410 61396410 C T TANC2 Missense_Mutation p.R438C 0.31 deleterious(0) possibly_damaging(0.872) TCGA-D8-A1Y1-01 17 61557230 61557230 C T ACE Silent p.Y204Y 0.22 TCGA-D8-A1Y1-01 17 67183897 67183897 C T ABCA10 Nonsense_Mutation p.W752* 0.23 TCGA-D8-A1Y1-01 17 7385307 7385307 G A SLC35G6 Missense_Mutation p.A2T 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D8-A1Y1-01 17 7828433 7828433 G T KCNAB3 Missense_Mutation p.P203T 0.19 tolerated(0.07) benign(0.033) TCGA-D8-A1Y1-01 18 44139503 44139503 C T LOXHD1 5'Flank 0.23 TCGA-D8-A1Y1-01 18 55355712 55355712 A G ATP8B1 Silent p.S416S 0.13 TCGA-D8-A1Y1-01 18 58039219 58039219 C T MC4R Missense_Mutation p.D122N 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A1Y1-01 18 7231524 7231524 A G LRRC30 Missense_Mutation p.T130A 0.31 tolerated(0.15) benign(0.002) TCGA-D8-A1Y1-01 19 1014378 1014378 C T TMEM259 Missense_Mutation p.R107H 0.42 deleterious(0.02) probably_damaging(0.931) TCGA-D8-A1Y1-01 19 10445930 10445930 G A ICAM3 Missense_Mutation p.S250L 0.35 tolerated(0.1) possibly_damaging(0.904) TCGA-D8-A1Y1-01 19 10449539 10449539 A T ICAM3 Missense_Mutation p.S54R 0.50 deleterious(0) probably_damaging(0.998) TCGA-D8-A1Y1-01 19 13223557 13223557 C T TRMT1 Missense_Mutation p.G278R 0.14 deleterious(0) probably_damaging(0.963) TCGA-D8-A1Y1-01 19 21512198 21512198 G A ZNF708 5'UTR 0.23 TCGA-D8-A1Y1-01 19 2280862 2280862 C T C19orf35 Silent p.T23T 0.44 TCGA-D8-A1Y1-01 19 36357343 36357343 A G KIRREL2 Silent p.P692P 0.23 TCGA-D8-A1Y1-01 19 38901798 38901798 G - RASGRP4 Frame_Shift_Del p.G604Efs*57 0.50 TCGA-D8-A1Y1-01 19 39591673 39591673 G A PAPL Missense_Mutation p.D298N 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A1Y1-01 19 41825700 41825700 G C CCDC97 Missense_Mutation p.E242Q 0.24 tolerated(0.16) possibly_damaging(0.744) TCGA-D8-A1Y1-01 19 42381320 42381320 G A CD79A 5'UTR 0.19 TCGA-D8-A1Y1-01 19 44570961 44570961 G A ZNF223 Missense_Mutation p.R327H 0.24 tolerated(0.54) benign(0.05) TCGA-D8-A1Y1-01 19 46130077 46130077 C T EML2 Silent p.L410L 0.19 TCGA-D8-A1Y1-01 19 48229479 48229479 C T EHD2 Nonsense_Mutation p.R305* 0.27 TCGA-D8-A1Y1-01 19 49656895 49656895 C T HRC Missense_Mutation p.E534K 0.57 deleterious(0) possibly_damaging(0.899) TCGA-D8-A1Y1-01 19 50335233 50335233 C T MED25 Missense_Mutation p.T424M 0.16 deleterious(0) possibly_damaging(0.522) TCGA-D8-A1Y1-01 19 50519394 50519394 C T VRK3 Missense_Mutation p.G9D 0.12 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 19 51323226 51323227 - T KLK1 Frame_Shift_Ins p.A188Sfs*26 0.39 TCGA-D8-A1Y1-01 19 54254542 54254542 C T MIR522 RNA 0.09 TCGA-D8-A1Y1-01 19 55494672 55494672 C T NLRP2 Nonsense_Mutation p.Q536* 0.11 TCGA-D8-A1Y1-01 19 57803637 57803637 A G ZNF460 3'UTR 0.20 TCGA-D8-A1Y1-01 1 100606429 100606429 G A TRMT13 Missense_Mutation p.E175K 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-D8-A1Y1-01 1 114248545 114248546 - A PHTF1 Frame_Shift_Ins p.M547Hfs*10 0.25 TCGA-D8-A1Y1-01 1 154516982 154516982 C T TDRD10 Silent p.H262H 0.23 TCGA-D8-A1Y1-01 1 156437437 156437437 T C MEF2D Nonstop_Mutation p.*522Wext*11 0.12 TCGA-D8-A1Y1-01 1 157504569 157504569 G C FCRL5 Missense_Mutation p.Q506E 0.18 deleterious(0.04) possibly_damaging(0.719) TCGA-D8-A1Y1-01 1 15831197 15831197 C T CASP9 Silent p.S259S 0.24 TCGA-D8-A1Y1-01 1 158326370 158326370 A - CD1E Frame_Shift_Del p.K331Nfs*47 0.27 TCGA-D8-A1Y1-01 1 159683727 159683727 T C CRP Missense_Mutation p.D88G 0.17 tolerated(0.42) benign(0.001) TCGA-D8-A1Y1-01 1 160143454 160143454 G C ATP1A4 Silent p.T646T 0.19 TCGA-D8-A1Y1-01 1 16260214 16260214 C - SPEN Frame_Shift_Del p.P2495Lfs*4 0.25 TCGA-D8-A1Y1-01 1 182572462 182572462 G C RGS16 Missense_Mutation p.F19L 0.12 tolerated(1) benign(0.004) TCGA-D8-A1Y1-01 1 186034377 186034377 A G HMCN1 Silent p.P2507P 0.38 TCGA-D8-A1Y1-01 1 196659317 196659317 A G CFH Silent p.T428T 0.19 TCGA-D8-A1Y1-01 1 196758765 196758765 C T CFHR3 Intron 0.15 TCGA-D8-A1Y1-01 1 206224826 206224826 C T AVPR1B Missense_Mutation p.T129M 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 1 208227774 208227774 T C PLXNA2 Missense_Mutation p.T950A 0.14 tolerated(0.25) benign(0.014) TCGA-D8-A1Y1-01 1 21299568 21299568 G A EIF4G3 Missense_Mutation p.P124L 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-D8-A1Y1-01 1 215813964 215813964 G A USH2A Silent p.D4968D 0.12 TCGA-D8-A1Y1-01 1 226041376 226041376 C T TMEM63A Missense_Mutation p.R584H 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A1Y1-01 1 228335369 228335369 G A GUK1 Silent p.R169R 0.21 TCGA-D8-A1Y1-01 1 228497221 228497221 G A OBSCN Missense_Mutation p.V5282M 0.15 probably_damaging(1) TCGA-D8-A1Y1-01 1 233393833 233393833 G A PCNXL2 Missense_Mutation p.T592M 0.17 tolerated(0.11) benign(0.007) TCGA-D8-A1Y1-01 1 233507928 233507928 G - MLK4 Intron 0.26 TCGA-D8-A1Y1-01 1 233802463 233802463 G A KCNK1 Missense_Mutation p.V160I 0.13 tolerated(0.17) benign(0.029) TCGA-D8-A1Y1-01 1 247053342 247053342 T C AHCTF1 Silent p.S699S 0.12 TCGA-D8-A1Y1-01 1 41945006 41945006 C A EDN2 3'UTR 0.30 TCGA-D8-A1Y1-01 1 60338642 60338643 - A HOOK1 3'UTR 0.41 TCGA-D8-A1Y1-01 1 65306997 65306997 T - JAK1 Frame_Shift_Del p.K860Nfs*16 0.31 TCGA-D8-A1Y1-01 1 65325833 65325833 G - JAK1 Frame_Shift_Del p.P430Rfs*2 0.39 TCGA-D8-A1Y1-01 1 70701196 70701196 G A SRSF11 Missense_Mutation p.D185N 0.30 deleterious(0.04) unknown(0) TCGA-D8-A1Y1-01 1 75036916 75036916 G A C1orf173 Missense_Mutation p.A1493V 0.14 tolerated(0.33) benign(0.084) TCGA-D8-A1Y1-01 1 98058912 98058912 C T DPYD Silent p.S330S 0.27 TCGA-D8-A1Y1-01 20 10644610 10644610 C T JAG1 Splice_Site p.X147_splice 0.16 TCGA-D8-A1Y1-01 20 17595481 17595481 G A RRBP1 Silent p.R932R 0.07 TCGA-D8-A1Y1-01 20 24949624 24949624 C - APMAP Frame_Shift_Del p.Y316Tfs*29 0.30 TCGA-D8-A1Y1-01 20 31041163 31041163 G A C20orf112 Missense_Mutation p.R237C 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 20 4202069 4202069 C T ADRA1D 3'UTR 0.38 TCGA-D8-A1Y1-01 20 46318931 46318931 G - SULF2 Frame_Shift_Del p.H226Tfs*43 0.50 TCGA-D8-A1Y1-01 21 44195410 44195411 - G PDE9A 3'UTR 0.35 TCGA-D8-A1Y1-01 22 29726657 29726657 C T AP1B1 Missense_Mutation p.E856K 0.63 tolerated(0.3) benign(0.035) TCGA-D8-A1Y1-01 22 43213231 43213231 T C ARFGAP3 Missense_Mutation p.I327M 0.09 deleterious(0) probably_damaging(0.999) TCGA-D8-A1Y1-01 22 51015421 51015421 G A CPT1B Silent p.S108S 0.28 TCGA-D8-A1Y1-01 2 105654495 105654495 G A MRPS9 5'UTR 0.56 TCGA-D8-A1Y1-01 2 107460277 107460277 G A ST6GAL2 Missense_Mutation p.P53S 0.67 possibly_damaging(0.695) TCGA-D8-A1Y1-01 2 108614339 108614341 TCA - SLC5A7 In_Frame_Del p.I167del 0.53 TCGA-D8-A1Y1-01 2 11053665 11053665 C T KCNF1 Silent p.V371V 0.24 TCGA-D8-A1Y1-01 2 128185995 128185995 G A PROC Missense_Mutation p.V287I 0.26 tolerated(1) benign(0) TCGA-D8-A1Y1-01 2 136564955 136564955 C T LCT Missense_Mutation p.D1306N 0.40 deleterious(0.01) possibly_damaging(0.573) TCGA-D8-A1Y1-01 2 145147249 145147251 CTT - ZEB2 In_Frame_Del p.K1138del 0.47 TCGA-D8-A1Y1-01 2 1653368 1653368 G A PXDN Silent p.R728R 0.32 TCGA-D8-A1Y1-01 2 170344338 170344338 G A BBS5 Silent p.L77L 0.57 TCGA-D8-A1Y1-01 2 179296889 179296889 T C PRKRA Missense_Mutation p.N293D 0.08 tolerated(0.35) benign(0.022) TCGA-D8-A1Y1-01 2 188332651 188332651 C T TFPI Missense_Mutation p.G213S 0.22 tolerated(0.39) benign(0.303) TCGA-D8-A1Y1-01 2 198950763 198950763 T - PLCL1 Frame_Shift_Del p.F842Lfs*4 0.36 TCGA-D8-A1Y1-01 2 218682600 218682600 G T TNS1 Missense_Mutation p.S1381R 0.38 deleterious(0) probably_damaging(0.998) TCGA-D8-A1Y1-01 2 220081432 220081432 C - ABCB6 Frame_Shift_Del p.L271Sfs*20 0.27 TCGA-D8-A1Y1-01 2 233431669 233431669 C T EIF4E2 Missense_Mutation p.A169V 0.26 tolerated(0.18) benign(0.118) TCGA-D8-A1Y1-01 2 24303775 24303775 A T TP53I3 Missense_Mutation p.L178H 0.10 tolerated(0.12) probably_damaging(0.997) TCGA-D8-A1Y1-01 2 27838044 27838044 A G ZNF512 Missense_Mutation p.T381A 0.28 tolerated(0.07) benign(0.002) TCGA-D8-A1Y1-01 2 28464261 28464261 G A BRE Splice_Site p.X284_splice 0.34 TCGA-D8-A1Y1-01 2 47702265 47702265 C T MSH2 Nonsense_Mutation p.R621* 0.60 TCGA-D8-A1Y1-01 2 71839797 71839797 C - DYSF Frame_Shift_Del p.I1419Sfs*47 0.50 TCGA-D8-A1Y1-01 2 98273221 98273221 G T ACTR1B 3'UTR 0.50 TCGA-D8-A1Y1-01 3 102187833 102187833 G A ZPLD1 Missense_Mutation p.V279I 0.65 tolerated(0.5) benign(0.03) TCGA-D8-A1Y1-01 3 114057923 114057923 C T ZBTB20 Missense_Mutation p.V719I 0.21 tolerated_low_confidence(0.1) probably_damaging(0.939) TCGA-D8-A1Y1-01 3 127395142 127395142 C T ABTB1 Silent p.D116D 0.37 TCGA-D8-A1Y1-01 3 132153451 132153451 A G DNAJC13 Silent p.S19S 0.30 TCGA-D8-A1Y1-01 3 13546039 13546039 C A HDAC11 Silent p.T300T 0.31 TCGA-D8-A1Y1-01 3 14212015 14212015 A G XPC Missense_Mutation p.L112P 0.10 tolerated_low_confidence(0.58) benign(0) TCGA-D8-A1Y1-01 3 155652811 155652811 G C GMPS Missense_Mutation p.A595P 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-D8-A1Y1-01 3 178916823 178916823 C T PIK3CA Silent p.F70F 0.35 TCGA-D8-A1Y1-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.62 deleterious(0.04) probably_damaging(0.96) TCGA-D8-A1Y1-01 3 190373953 190373953 C T IL1RAP Missense_Mutation p.R541W 0.47 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 3 39227618 39227618 C A XIRP1 Missense_Mutation p.G1107C 0.29 deleterious(0) benign(0.166) TCGA-D8-A1Y1-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.22 TCGA-D8-A1Y1-01 3 51673633 51673633 G A RAD54L2 Missense_Mutation p.V687I 0.23 tolerated(0.59) benign(0.004) TCGA-D8-A1Y1-01 3 56650033 56650033 A G CCDC66 Missense_Mutation p.T599A 0.58 tolerated(0.74) benign(0.009) TCGA-D8-A1Y1-01 3 8787229 8787229 G A CAV3 Silent p.V44V 0.61 TCGA-D8-A1Y1-01 4 114251533 114251533 G A ANK2 Missense_Mutation p.R1011H 0.19 probably_damaging(1) TCGA-D8-A1Y1-01 4 123168476 123168476 C T KIAA1109 Nonsense_Mutation p.R1826* 0.12 TCGA-D8-A1Y1-01 4 125592464 125592464 G A ANKRD50 Silent p.H656H 0.25 TCGA-D8-A1Y1-01 4 160253744 160253744 A - RAPGEF2 Frame_Shift_Del p.V518* 0.30 TCGA-D8-A1Y1-01 4 22748956 22748956 A - GBA3 Frame_Shift_Del p.N110Mfs*7 0.11 TCGA-D8-A1Y1-01 4 42895323 42895323 C T GRXCR1 Missense_Mutation p.R14W 0.34 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-D8-A1Y1-01 4 48496158 48496158 G A ZAR1 Missense_Mutation p.R391H 0.27 deleterious(0) probably_damaging(0.986) TCGA-D8-A1Y1-01 4 62813942 62813942 C T LPHN3 Missense_Mutation p.S850F 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A1Y1-01 4 6578364 6578364 C T MAN2B2 Silent p.R66R 0.56 TCGA-D8-A1Y1-01 4 70462045 70462045 G A UGT2A1 Silent p.L307L 0.46 TCGA-D8-A1Y1-01 4 83839673 83839673 C T THAP9 Missense_Mutation p.R770W 0.07 deleterious(0.01) possibly_damaging(0.609) TCGA-D8-A1Y1-01 4 84377269 84377271 GAA - MRPS18C In_Frame_Del p.K15del 0.51 TCGA-D8-A1Y1-01 5 112321590 112321590 C T DCP2 Nonsense_Mutation p.Q38* 0.18 TCGA-D8-A1Y1-01 5 112926754 112926754 C T YTHDC2 Missense_Mutation p.S1281L 0.29 tolerated(0.09) benign(0.149) TCGA-D8-A1Y1-01 5 118835030 118835030 A G HSD17B4 Missense_Mutation p.K356E 0.21 tolerated(0.33) benign(0.005) TCGA-D8-A1Y1-01 5 131931354 131931354 G T RAD50 Missense_Mutation p.V687F 0.17 tolerated(0.06) benign(0.004) TCGA-D8-A1Y1-01 5 140188906 140188906 G A PCDHA4 Missense_Mutation p.V712M 0.19 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D8-A1Y1-01 5 140735488 140735488 G A PCDHGA4 Missense_Mutation p.V241M 0.26 deleterious_low_confidence(0.03) benign(0.363) TCGA-D8-A1Y1-01 5 140764797 140764797 C T PCDHGA7 Silent p.D777D 0.17 TCGA-D8-A1Y1-01 5 140793061 140793061 G A PCDHGA10 Missense_Mutation p.V107M 0.18 deleterious_low_confidence(0.02) benign(0.123) TCGA-D8-A1Y1-01 5 141359789 141359789 G A RNF14 Silent p.P312P 0.31 TCGA-D8-A1Y1-01 5 145886723 145886723 A - TCERG1 Frame_Shift_Del p.K957Rfs*17 0.25 TCGA-D8-A1Y1-01 5 156770205 156770205 A - FNDC9 Frame_Shift_Del p.W114Gfs*3 0.41 TCGA-D8-A1Y1-01 5 157182096 157182096 C T LSM11 Missense_Mutation p.R303W 0.34 deleterious(0) possibly_damaging(0.825) TCGA-D8-A1Y1-01 5 159776463 159776463 G A C1QTNF2 Silent p.G235G 0.30 TCGA-D8-A1Y1-01 5 167946113 167946113 G A RARS Missense_Mutation p.R634H 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 5 171638974 171638974 G A UBTD2 Missense_Mutation p.P189S 0.27 tolerated(0.15) benign(0.396) TCGA-D8-A1Y1-01 5 32090758 32090758 G A PDZD2 Missense_Mutation p.E2402K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A1Y1-01 5 34867123 34867123 G A TTC23L Silent p.Q263Q 0.23 TCGA-D8-A1Y1-01 5 38438425 38438425 G A EGFLAM Missense_Mutation p.G778R 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 5 61688029 61688029 T - DIMT1 Frame_Shift_Del p.N254Tfs*12 0.41 TCGA-D8-A1Y1-01 5 70858270 70858270 C T BDP1 Nonsense_Mutation p.R2556* 0.15 TCGA-D8-A1Y1-01 5 79095259 79095259 C T CMYA5 Silent p.G4010G 0.10 TCGA-D8-A1Y1-01 6 109906406 109906406 C G AK9 Missense_Mutation p.K678N 0.19 tolerated(1) benign(0) TCGA-D8-A1Y1-01 6 118886832 118886832 C T CEP85L Missense_Mutation p.V297I 0.16 tolerated(0.1) benign(0.141) TCGA-D8-A1Y1-01 6 150001152 150001152 T C LATS1 Missense_Mutation p.S818G 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A1Y1-01 6 160638453 160638453 G A SLC22A2 3'UTR 0.20 TCGA-D8-A1Y1-01 6 25983774 25983774 G A TRIM38 Silent p.E419E 0.21 TCGA-D8-A1Y1-01 6 30587733 30587733 C T MRPS18B Silent p.I107I 0.36 TCGA-D8-A1Y1-01 6 44219928 44219928 A T HSP90AB1 Missense_Mutation p.K552M 0.36 deleterious(0.01) probably_damaging(0.956) TCGA-D8-A1Y1-01 6 4996460 4996460 C T RPP40 Missense_Mutation p.D252N 0.23 tolerated(0.35) benign(0.013) TCGA-D8-A1Y1-01 6 572606 572606 C T EXOC2 Missense_Mutation p.E453K 0.26 deleterious(0.01) possibly_damaging(0.899) TCGA-D8-A1Y1-01 6 88773880 88773880 T C SPACA1 Missense_Mutation p.I225T 0.26 tolerated(0.91) benign(0.009) TCGA-D8-A1Y1-01 6 88854514 88854514 C T CNR1 Silent p.A160A 0.27 TCGA-D8-A1Y1-01 7 100732127 100732127 G A TRIM56 Missense_Mutation p.G512R 0.79 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 7 105248157 105248157 G A ATXN7L1 3'UTR 0.17 TCGA-D8-A1Y1-01 7 108204936 108204936 G A THAP5 Missense_Mutation p.T296M 0.04 tolerated(0.63) benign(0.001) TCGA-D8-A1Y1-01 7 120911387 120911388 - A CPED1 Frame_Shift_Ins p.H927Tfs*4 0.13 TCGA-D8-A1Y1-01 7 12375819 12375819 C T VWDE Silent p.A1534A 0.09 TCGA-D8-A1Y1-01 7 139102462 139102462 C T LUC7L2 Nonsense_Mutation p.R396* 0.06 TCGA-D8-A1Y1-01 7 141464156 141464156 T - TAS2R3 Frame_Shift_Del p.L68* 0.27 TCGA-D8-A1Y1-01 7 142983891 142983891 T - TMEM139 Frame_Shift_Del p.Y209Mfs*10 0.38 TCGA-D8-A1Y1-01 7 144068342 144068342 G A ARHGEF5 Missense_Mutation p.R1207Q 0.13 tolerated(0.19) benign(0.103) TCGA-D8-A1Y1-01 7 4153058 4153058 G A SDK1 Missense_Mutation p.R1191Q 0.17 tolerated(0.32) benign(0.237) TCGA-D8-A1Y1-01 7 72891325 72891325 T - BAZ1B Frame_Shift_Del p.E823Kfs*3 0.15 TCGA-D8-A1Y1-01 7 82595175 82595177 TCT - PCLO In_Frame_Del p.E1309del 0.22 TCGA-D8-A1Y1-01 7 87083859 87083861 TTC - ABCB4 In_Frame_Del p.E112del 0.12 TCGA-D8-A1Y1-01 7 91948770 91948770 C T ANKIB1 Missense_Mutation p.R205W 0.14 deleterious(0.02) possibly_damaging(0.892) TCGA-D8-A1Y1-01 7 99697274 99697274 G A MCM7 Missense_Mutation p.R72C 0.21 deleterious(0) possibly_damaging(0.637) TCGA-D8-A1Y1-01 8 117866515 117866515 G C RAD21 Missense_Mutation p.A377G 0.11 tolerated(0.25) benign(0.014) TCGA-D8-A1Y1-01 8 120774729 120774729 G A TAF2 Silent p.L828L 0.29 TCGA-D8-A1Y1-01 8 124105925 124105925 A G TBC1D31 Missense_Mutation p.Q205R 0.12 tolerated(0.18) benign(0.111) TCGA-D8-A1Y1-01 8 144658676 144658676 G A NAPRT1 Silent p.G316G 0.19 TCGA-D8-A1Y1-01 8 144941901 144941901 G A EPPK1 Nonsense_Mutation p.Q1841* 0.11 TCGA-D8-A1Y1-01 8 26505220 26505220 C - DPYSL2 Frame_Shift_Del p.R397Gfs*95 0.19 TCGA-D8-A1Y1-01 8 27151640 27151640 C T TRIM35 Missense_Mutation p.R240Q 0.23 tolerated(0.79) benign(0.068) TCGA-D8-A1Y1-01 8 2820822 2820822 C T CSMD1 Missense_Mutation p.G3126S 0.11 probably_damaging(1) TCGA-D8-A1Y1-01 8 30648767 30648767 C T PPP2CB Missense_Mutation p.R268H 0.12 tolerated(0.06) possibly_damaging(0.468) TCGA-D8-A1Y1-01 8 31001132 31001132 A - WRN Frame_Shift_Del p.S1128Vfs*34 0.21 TCGA-D8-A1Y1-01 8 42977594 42977594 G A POMK Silent p.P209P 0.15 TCGA-D8-A1Y1-01 8 61769023 61769023 C A CHD7 Missense_Mutation p.S2395Y 0.13 possibly_damaging(0.556) TCGA-D8-A1Y1-01 8 68089932 68089932 C A CSPP1 Missense_Mutation p.P1038T 0.15 tolerated(0.11) possibly_damaging(0.625) TCGA-D8-A1Y1-01 8 70570778 70570778 C T SULF1 3'UTR 0.18 TCGA-D8-A1Y1-01 9 107289169 107289169 C A OR13C4 Missense_Mutation p.G108W 0.41 deleterious(0) probably_damaging(1) TCGA-D8-A1Y1-01 9 116053923 116053923 C T PRPF4 Silent p.L518L 0.20 TCGA-D8-A1Y1-01 9 118950410 118950410 C T PAPPA Missense_Mutation p.R465W 0.22 tolerated(0.18) possibly_damaging(0.689) TCGA-D8-A1Y1-01 9 133506076 133506076 C - FUBP3 Frame_Shift_Del p.P395Lfs*27 0.32 TCGA-D8-A1Y1-01 9 135866411 135866411 C T GFI1B Missense_Mutation p.R323C 0.22 deleterious(0) possibly_damaging(0.531) TCGA-D8-A1Y1-01 9 136307529 136307529 C T ADAMTS13 Missense_Mutation p.R660W 0.21 deleterious(0) probably_damaging(0.993) TCGA-D8-A1Y1-01 9 80040546 80040546 T A GNA14 Missense_Mutation p.N270I 0.25 deleterious(0) probably_damaging(0.981) TCGA-D8-A1Y1-01 9 90535238 90535238 G A SPATA31C1 RNA 0.26 TCGA-D8-A1Y1-01 X 101396134 101396134 T G TCEAL6 Missense_Mutation p.E57A 0.13 tolerated(0.08) benign(0.272) TCGA-D8-A1Y1-01 X 115303889 115303889 T - AGTR2 Frame_Shift_Del p.F120Lfs*7 0.14 TCGA-D8-A1Y1-01 X 12906029 12906029 C T TLR7 Missense_Mutation p.T801M 0.30 deleterious(0) probably_damaging(0.937) TCGA-D8-A1Y1-01 X 153133791 153133791 C T L1CAM Missense_Mutation p.G557S 0.23 deleterious(0.05) possibly_damaging(0.901) TCGA-D8-A1Y1-01 X 154493388 154493388 G A RAB39B Silent p.I62I 0.52 TCGA-D8-A1Y1-01 X 37026807 37026807 G A FAM47C Silent p.S108S 0.10 TCGA-D8-A1Y2-01 11 64136024 64136024 C T RPS6KA4 Missense_Mutation p.R429C 0.38 tolerated(0.08) possibly_damaging(0.849) TCGA-D8-A1Y2-01 14 102449530 102449530 G A DYNC1H1 Missense_Mutation p.R379H 0.14 benign(0.086) TCGA-D8-A1Y2-01 14 50915497 50915497 C T MAP4K5 Missense_Mutation p.E357K 0.29 tolerated(0.14) benign(0.022) TCGA-D8-A1Y2-01 17 38510603 38510603 T C RARA Missense_Mutation p.F286S 0.26 deleterious(0) probably_damaging(0.998) TCGA-D8-A1Y2-01 17 40762203 40762203 G A TUBG1 Missense_Mutation p.E43K 0.22 tolerated(0.24) benign(0.056) TCGA-D8-A1Y2-01 19 41117154 41117154 G A LTBP4 Missense_Mutation p.R703Q 0.11 tolerated(0.16) benign(0.126) TCGA-D8-A1Y2-01 19 48239730 48239730 G C EHD2 Silent p.A340A 0.19 TCGA-D8-A1Y2-01 19 51361806 51361806 C T KLK3 Silent p.F195F 0.15 TCGA-D8-A1Y2-01 1 158576343 158576343 C G OR10Z1 Missense_Mutation p.L39V 0.16 deleterious(0.05) benign(0.048) TCGA-D8-A1Y2-01 1 201333496 201333496 C T TNNT2 Missense_Mutation p.R130H 0.14 deleterious(0) probably_damaging(0.955) TCGA-D8-A1Y2-01 1 201859604 201859604 G A SHISA4 Missense_Mutation p.A90T 0.12 deleterious(0) probably_damaging(0.948) TCGA-D8-A1Y2-01 1 247655261 247655261 C G OR2W5 RNA 0.50 TCGA-D8-A1Y2-01 1 27721113 27721113 G A GPR3 Missense_Mutation p.D271N 0.16 deleterious(0.01) possibly_damaging(0.89) TCGA-D8-A1Y2-01 1 75055486 75055486 G A C1orf173 Missense_Mutation p.L669F 0.18 deleterious(0.04) benign(0.393) TCGA-D8-A1Y2-01 2 169791866 169791866 C T ABCB11 Missense_Mutation p.A962T 0.18 tolerated(0.22) benign(0.008) TCGA-D8-A1Y2-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.30 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A1Y2-01 3 196235169 196235169 G T SMCO1 Missense_Mutation p.S78R 0.18 deleterious(0) probably_damaging(0.997) TCGA-D8-A1Y2-01 3 47484492 47484492 G A SCAP 5'UTR 0.16 TCGA-D8-A1Y2-01 3 4847896 4847896 A G ITPR1 Missense_Mutation p.Y2391C 0.44 deleterious(0.01) probably_damaging(1) TCGA-D8-A1Y2-01 5 137766020 137766020 G A KDM3B Missense_Mutation p.R1659H 0.20 deleterious(0) probably_damaging(0.997) TCGA-D8-A1Y2-01 5 141049557 141049557 G A ARAP3 Silent p.L727L 0.32 TCGA-D8-A1Y2-01 6 107070756 107070756 C A RTN4IP1 Silent p.R121R 0.11 TCGA-D8-A1Y3-01 10 103360972 103360972 C T DPCD Missense_Mutation p.R95C 0.58 deleterious(0) probably_damaging(0.992) TCGA-D8-A1Y3-01 10 16945996 16945996 G A CUBN Silent p.H2677H 0.21 TCGA-D8-A1Y3-01 10 26825123 26825123 T A APBB1IP Missense_Mutation p.Y341N 0.23 deleterious(0) probably_damaging(0.999) TCGA-D8-A1Y3-01 10 45642910 45642910 A G RP11-445N18.7 RNA 0.24 TCGA-D8-A1Y3-01 10 90427417 90427417 A G LIPF Missense_Mutation p.Y76C 0.09 deleterious(0.04) benign(0.108) TCGA-D8-A1Y3-01 10 90524285 90524285 G T LIPN Missense_Mutation p.W115C 0.48 deleterious(0) probably_damaging(0.994) TCGA-D8-A1Y3-01 11 108059913 108059913 C T NPAT Missense_Mutation p.R159Q 0.26 tolerated(0.13) benign(0.056) TCGA-D8-A1Y3-01 11 6024337 6024337 C T OR56A4 Silent p.Q14Q 0.21 TCGA-D8-A1Y3-01 11 64416348 64416348 A G NRXN2 Silent p.N1047N 0.35 TCGA-D8-A1Y3-01 11 94278445 94278445 C T FUT4 Silent p.T382T 0.18 TCGA-D8-A1Y3-01 12 119591417 119591417 C T SRRM4 Missense_Mutation p.R452C 0.40 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-D8-A1Y3-01 12 122720362 122720362 G A VPS33A Missense_Mutation p.R471C 0.23 deleterious(0) probably_damaging(0.954) TCGA-D8-A1Y3-01 12 123199998 123199998 G A HCAR3 3'UTR 0.21 TCGA-D8-A1Y3-01 12 12640024 12640024 G A DUSP16 Missense_Mutation p.P210L 0.20 deleterious(0) possibly_damaging(0.876) TCGA-D8-A1Y3-01 12 2795355 2795355 G C CACNA1C Missense_Mutation p.E1950Q 0.51 tolerated_low_confidence(0.33) possibly_damaging(0.533) TCGA-D8-A1Y3-01 12 49918618 49918618 C T SPATS2 Missense_Mutation p.P422L 0.08 deleterious(0.03) benign(0.003) TCGA-D8-A1Y3-01 12 70974895 70974895 G A PTPRB Silent p.S833S 0.56 TCGA-D8-A1Y3-01 13 80910967 80910967 G A SPRY2 Missense_Mutation p.R292C 0.58 deleterious(0) probably_damaging(0.91) TCGA-D8-A1Y3-01 14 103988690 103988690 C T CKB Silent p.T47T 0.44 TCGA-D8-A1Y3-01 15 39874617 39874619 GAA - THBS1 In_Frame_Del p.K99del 0.41 TCGA-D8-A1Y3-01 15 41870239 41870239 C T TYRO3 Missense_Mutation p.P813L 0.21 tolerated(0.44) benign(0.001) TCGA-D8-A1Y3-01 15 90167690 90167690 A C TICRR Missense_Mutation p.K1383N 0.21 tolerated(0.08) possibly_damaging(0.72) TCGA-D8-A1Y3-01 16 31473590 31473590 C T ARMC5 Missense_Mutation p.P241L 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-D8-A1Y3-01 17 58275761 58275761 G A USP32 Silent p.P1098P 0.52 TCGA-D8-A1Y3-01 17 58725291 58725291 G A PPM1D Missense_Mutation p.V289M 0.21 deleterious(0.01) probably_damaging(0.92) TCGA-D8-A1Y3-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.54 TCGA-D8-A1Y3-01 19 19766896 19766896 T C ATP13A1 Missense_Mutation p.I394V 0.26 deleterious(0.03) benign(0.027) TCGA-D8-A1Y3-01 19 20228629 20228629 A G ZNF90 Missense_Mutation p.Q89R 0.18 tolerated(0.06) benign(0.007) TCGA-D8-A1Y3-01 19 39369929 39369929 G A SIRT2 Missense_Mutation p.R346W 0.30 deleterious(0) benign(0.356) TCGA-D8-A1Y3-01 19 8577364 8577364 C T ZNF414 Missense_Mutation p.R146H 0.48 tolerated(0.28) benign(0.006) TCGA-D8-A1Y3-01 1 104203222 104203222 T A AMY1A Missense_Mutation p.F342Y 0.40 tolerated(0.06) probably_damaging(0.946) TCGA-D8-A1Y3-01 1 153636538 153636538 G A ILF2 Missense_Mutation p.P242L 0.21 deleterious(0.03) benign(0.139) TCGA-D8-A1Y3-01 1 242253225 242253225 G T PLD5 Missense_Mutation p.F514L 0.12 tolerated_low_confidence(0.65) benign(0) TCGA-D8-A1Y3-01 1 61548326 61548327 - T NFIA Intron 0.59 TCGA-D8-A1Y3-01 20 22563382 22563382 C T FOXA2 Silent p.P166P 0.33 TCGA-D8-A1Y3-01 20 3677795 3677795 C T SIGLEC1 Missense_Mutation p.A773T 0.29 tolerated(0.43) benign(0.02) TCGA-D8-A1Y3-01 20 40081437 40081443 GCTTTGT ACAA CHD6 In_Frame_Del p.D1087_A1089delinsVV 0.24 TCGA-D8-A1Y3-01 20 54824328 54824328 C T MC3R Silent p.Y143Y 0.23 TCGA-D8-A1Y3-01 20 60578311 60578311 G C TAF4 Silent p.A797A 0.26 TCGA-D8-A1Y3-01 21 33711046 33711046 C T URB1 Missense_Mutation p.G1494R 0.08 tolerated(0.09) benign(0.032) TCGA-D8-A1Y3-01 21 43338233 43338233 G A C2CD2 Missense_Mutation p.T234M 0.32 tolerated(0.06) benign(0.056) TCGA-D8-A1Y3-01 2 99988165 99988165 T A EIF5B Silent p.A508A 0.33 TCGA-D8-A1Y3-01 3 167167160 167167160 G A SERPINI2 Missense_Mutation p.T332M 0.15 tolerated(0.64) benign(0.01) TCGA-D8-A1Y3-01 3 38892206 38892206 T C SCN11A Missense_Mutation p.S1365G 0.55 deleterious(0.03) benign(0.118) TCGA-D8-A1Y3-01 3 41938435 41938435 G A ULK4 Missense_Mutation p.S470L 0.28 tolerated(0.09) benign(0.009) TCGA-D8-A1Y3-01 4 139144461 139144461 T G SLC7A11 Missense_Mutation p.N180H 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A1Y3-01 4 155242117 155242117 T A DCHS2 Missense_Mutation p.R1023S 0.25 tolerated(0.06) possibly_damaging(0.869) TCGA-D8-A1Y3-01 4 165890903 165890903 T C TRIM61 Silent p.R84R 0.26 TCGA-D8-A1Y3-01 4 88106441 88106441 G A KLHL8 Nonsense_Mutation p.Q243* 0.43 TCGA-D8-A1Y3-01 5 140720528 140720528 G A PCDHGA2 Missense_Mutation p.V664M 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-D8-A1Y3-01 5 153026664 153026664 C G GRIA1 Missense_Mutation p.L143V 0.32 tolerated(0.14) possibly_damaging(0.497) TCGA-D8-A1Y3-01 5 36195293 36195293 T C NADK2 Missense_Mutation p.M428V 0.51 tolerated(0.21) benign(0.002) TCGA-D8-A1Y3-01 6 170151432 170151432 C T TCTE3 Intron 0.36 TCGA-D8-A1Y3-01 6 17539526 17539526 G A CAP2 Silent p.A221A 0.22 TCGA-D8-A1Y3-01 6 17608448 17608448 A C FAM8A1 Missense_Mutation p.K374Q 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A1Y3-01 6 33372827 33372827 C T KIFC1 Missense_Mutation p.P319S 0.28 deleterious(0) probably_damaging(0.996) TCGA-D8-A1Y3-01 6 36940433 36940433 A C MTCH1 Intron 0.23 TCGA-D8-A1Y3-01 6 39162069 39162069 G A KCNK5 Silent p.G170G 0.20 TCGA-D8-A1Y3-01 6 41122014 41122014 G C TREML1 Missense_Mutation p.L5V 0.14 tolerated_low_confidence(0.28) unknown(0) TCGA-D8-A1Y3-01 7 64451520 64451520 G A ERV3-1 3'UTR 0.31 TCGA-D8-A1Y3-01 8 110477044 110477044 A G PKHD1L1 Silent p.E2661E 0.09 TCGA-D8-A1Y3-01 8 141810673 141810673 A T PTK2 Silent p.P326P 0.08 TCGA-D8-A1Y3-01 8 30958371 30958371 C T WRN Missense_Mutation p.T663M 0.57 deleterious(0) probably_damaging(0.982) TCGA-D8-A1Y3-01 8 42608268 42608268 A G CHRNA6 3'UTR 0.37 TCGA-D8-A1Y3-01 9 123943767 123943767 A G RAB14 Silent p.A185A 0.77 TCGA-D8-A1Y3-01 9 35794041 35794041 C T NPR2 Missense_Mutation p.R272W 0.72 deleterious(0) possibly_damaging(0.849) TCGA-D8-A1Y3-01 9 420960 420960 T A DOCK8 Missense_Mutation p.S1345R 0.42 tolerated(0.2) benign(0.016) TCGA-D8-A1Y3-01 9 5830922 5830922 C G ERMP1 Missense_Mutation p.V149L 0.35 tolerated(0.32) benign(0) TCGA-D8-A1Y3-01 9 88204545 88204545 G A AGTPBP1 Missense_Mutation p.R834W 0.28 deleterious(0) probably_damaging(0.944) TCGA-D8-A1Y3-01 X 101092485 101092485 C T NXF5 Missense_Mutation p.R354Q 0.05 tolerated(0.23) benign(0.001) TCGA-D8-A27E-01 14 94935899 94935899 C T SERPINA9 Silent p.Q111Q 0.46 TCGA-D8-A27E-01 16 89762012 89762012 C A CDK10 Missense_Mutation p.P332Q 0.18 deleterious(0.01) possibly_damaging(0.839) TCGA-D8-A27E-01 18 47480795 47480795 C A MYO5B Missense_Mutation p.G519V 0.28 deleterious(0) probably_damaging(0.977) TCGA-D8-A27E-01 19 45175930 45175930 C G CEACAM19 Missense_Mutation p.P40A 0.52 deleterious(0.03) probably_damaging(0.951) TCGA-D8-A27E-01 19 54240127 54240127 A C MIR516B1 RNA 0.35 TCGA-D8-A27E-01 19 59073812 59073813 - TGAGGCGCTGGC MZF1 In_Frame_Ins p.S607_L610dup 0.42 TCGA-D8-A27E-01 20 2820525 2820525 G A PCED1A Missense_Mutation p.R12C 0.39 tolerated_low_confidence(0.11) benign(0.003) TCGA-D8-A27E-01 22 39711279 39711286 CCAGCGCT - RPL3 Intron 0.31 TCGA-D8-A27E-01 3 130383928 130383928 G A COL6A6 Missense_Mutation p.R2195Q 0.32 tolerated_low_confidence(0.28) benign(0.001) TCGA-D8-A27E-01 4 146058902 146058902 C T OTUD4 Missense_Mutation p.A944T 0.33 tolerated(0.23) benign(0.02) TCGA-D8-A27E-01 6 36041850 36041850 G A MAPK14 Missense_Mutation p.V158M 0.24 deleterious(0) probably_damaging(0.997) TCGA-D8-A27E-01 7 117022190 117022190 G C ASZ1 Missense_Mutation p.T274R 0.27 deleterious(0) benign(0.069) TCGA-D8-A27E-01 7 42018291 42018306 CAGCCACCTGCACACG - GLI3 Frame_Shift_Del p.F513Lfs*17 0.38 TCGA-D8-A27E-01 8 54141731 54141731 A G OPRK1 3'UTR 0.40 TCGA-D8-A27F-01 10 129904060 129904086 ACTGGTAGGACCTCTTCTTTCACACCT - MKI67 In_Frame_Del p.V2008_G2016del 0.72 TCGA-D8-A27F-01 10 50025362 50025362 G A WDFY4 Missense_Mutation p.V1805I 0.38 tolerated(0.57) benign(0.014) TCGA-D8-A27F-01 11 32722361 32722361 C A CCDC73 Missense_Mutation p.K97N 0.36 deleterious(0) probably_damaging(0.992) TCGA-D8-A27F-01 11 35226171 35226171 G C CD44 Silent p.S422S 0.36 TCGA-D8-A27F-01 11 51515822 51515822 C A OR4C46 Missense_Mutation p.P181T 0.40 deleterious_low_confidence(0.02) benign(0.424) TCGA-D8-A27F-01 11 55681285 55681285 C T OR5W2 Missense_Mutation p.M258I 0.47 tolerated(0.09) benign(0.127) TCGA-D8-A27F-01 12 80928679 80928679 G A PTPRQ Missense_Mutation p.D946N 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A27F-01 12 81101569 81101569 C A MYF6 Missense_Mutation p.P24Q 0.67 tolerated(0.54) benign(0.002) TCGA-D8-A27F-01 12 8374581 8374581 G C FAM90A1 Missense_Mutation p.A411G 0.47 deleterious(0.02) possibly_damaging(0.889) TCGA-D8-A27F-01 13 29275494 29275494 C G SLC46A3 Intron 0.60 TCGA-D8-A27F-01 14 22005013 22005013 C G SALL2 Missense_Mutation p.D15H 0.47 deleterious(0) possibly_damaging(0.621) TCGA-D8-A27F-01 14 22102231 22102231 G A OR10G2 Silent p.Y256Y 0.30 TCGA-D8-A27F-01 15 68612682 68612682 T A ITGA11 Silent p.A819A 0.44 TCGA-D8-A27F-01 15 91354482 91354509 GGAAGAAGTGCCGCTGAGGAGCTCGACG - BLM Frame_Shift_Del p.G1308Rfs*89 0.42 TCGA-D8-A27F-01 16 67283105 67283105 G T SLC9A5 Splice_Site p.X63_splice 0.29 TCGA-D8-A27F-01 17 48265251 48265277 GACCCTGGAGGCCAGAGAAGCCACGGT - COL1A1 In_Frame_Del p.H1110_G1118del 0.52 TCGA-D8-A27F-01 17 58525152 58525152 A T APPBP2 Missense_Mutation p.D516E 0.52 deleterious(0) probably_damaging(0.997) TCGA-D8-A27F-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.58 TCGA-D8-A27F-01 17 77705037 77705037 G C ENPP7 Missense_Mutation p.D46H 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A27F-01 18 18531219 18531219 G A ROCK1 3'UTR 0.35 TCGA-D8-A27F-01 18 18531220 18531220 C A ROCK1 3'UTR 0.36 TCGA-D8-A27F-01 18 70502366 70502366 T G NETO1 Intron 0.56 TCGA-D8-A27F-01 18 72775227 72775227 C G ZNF407 Silent p.L1850L 0.85 TCGA-D8-A27F-01 19 13186433 13186433 C G NFIX Silent p.S301S 0.43 TCGA-D8-A27F-01 19 3019621 3019621 A G TLE2 Intron 0.38 TCGA-D8-A27F-01 19 4513410 4513410 G A PLIN4 Nonsense_Mutation p.Q174* 0.54 TCGA-D8-A27F-01 19 52115496 52115496 C G SIGLEC5 Missense_Mutation p.K548N 0.69 deleterious(0.04) benign(0.039) TCGA-D8-A27F-01 19 55880300 55880300 C G IL11 Missense_Mutation p.R6P 0.77 tolerated(0.26) unknown(0) TCGA-D8-A27F-01 19 8842092 8842092 A T OR2Z1 Missense_Mutation p.R234S 0.31 deleterious(0.01) benign(0.345) TCGA-D8-A27F-01 1 120054136 120054136 C A HSD3B1 Missense_Mutation p.N52K 0.44 tolerated(0.37) benign(0.005) TCGA-D8-A27F-01 1 152327278 152327278 C T FLG2 Missense_Mutation p.S995N 0.19 unknown(0) TCGA-D8-A27F-01 1 155263003 155263003 A C PKLR Missense_Mutation p.C467W 0.22 tolerated(0.1) probably_damaging(1) TCGA-D8-A27F-01 1 185951458 185951458 G T HMCN1 Missense_Mutation p.L909F 0.52 probably_damaging(0.998) TCGA-D8-A27F-01 1 199996930 199996930 A G NR5A2 5'UTR 0.31 TCGA-D8-A27F-01 1 33988932 33988932 T C CSMD2 Missense_Mutation p.D3351G 0.39 tolerated(0.05) benign(0.002) TCGA-D8-A27F-01 1 9777639 9777639 C G PIK3CD Missense_Mutation p.I325M 0.75 deleterious(0.02) possibly_damaging(0.619) TCGA-D8-A27F-01 20 49626537 49626537 G A KCNG1 Silent p.N113N 0.79 TCGA-D8-A27F-01 21 45947265 45947265 G C TSPEAR Silent p.V353V 0.38 TCGA-D8-A27F-01 2 120799675 120799675 G C EPB41L5 Missense_Mutation p.A92P 0.19 tolerated(0.09) probably_damaging(0.974) TCGA-D8-A27F-01 2 170558059 170558059 A G PHOSPHO2 Missense_Mutation p.D193G 0.70 tolerated(1) benign(0) TCGA-D8-A27F-01 2 197594178 197594178 A C CCDC150 Intron 0.41 TCGA-D8-A27F-01 2 24494689 24494689 C G ITSN2 Missense_Mutation p.A735P 0.43 tolerated(0.32) unknown(0) TCGA-D8-A27F-01 2 39456599 39456599 G A CDKL4 Silent p.T25T 0.37 TCGA-D8-A27F-01 3 113955515 113955515 C T ZNF80 Missense_Mutation p.S136N 0.43 tolerated(0.43) benign(0.029) TCGA-D8-A27F-01 3 119301156 119301156 A T ADPRH Missense_Mutation p.D47V 0.30 tolerated(0.42) possibly_damaging(0.565) TCGA-D8-A27F-01 3 123166295 123166295 C T ADCY5 Silent p.L366L 0.33 TCGA-D8-A27F-01 3 123166296 123166296 A T ADCY5 Missense_Mutation p.L366Q 0.35 deleterious(0.05) possibly_damaging(0.702) TCGA-D8-A27F-01 3 123166299 123166302 GCGA - ADCY5 Frame_Shift_Del p.I364Tfs*12 0.33 TCGA-D8-A27F-01 3 148880113 148880113 T A HPS3 Missense_Mutation p.F762Y 0.37 tolerated(0.09) probably_damaging(0.916) TCGA-D8-A27F-01 3 151162894 151162894 T A IGSF10 Silent p.P1625P 0.36 TCGA-D8-A27F-01 3 156868125 156868133 AAATCGAAC - CCNL1 In_Frame_Del p.V238_F240del 0.24 TCGA-D8-A27F-01 3 183665225 183665225 G A ABCC5 Missense_Mutation p.R1101W 0.36 tolerated(0.12) possibly_damaging(0.866) TCGA-D8-A27F-01 3 28557108 28557108 C A ZCWPW2 Missense_Mutation p.N260K 0.69 deleterious(0) possibly_damaging(0.462) TCGA-D8-A27F-01 3 49450057 49450057 G A TCTA Silent p.G66G 0.62 TCGA-D8-A27F-01 3 52436639 52436664 TAAAGGTGCAGATGAACTCATCGTAG - BAP1 Frame_Shift_Del p.Y671Lfs*37 0.61 TCGA-D8-A27F-01 4 144922352 144922352 G T GYPB Nonsense_Mutation p.S41* 0.55 TCGA-D8-A27F-01 5 42800932 42800932 G C SEPP1 Missense_Mutation p.R346G 0.41 deleterious_low_confidence(0) benign(0.426) TCGA-D8-A27F-01 6 11190223 11190223 C A NEDD9 Missense_Mutation p.D627Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-D8-A27F-01 6 29141639 29141639 C A OR2J2 Missense_Mutation p.T76N 0.31 deleterious(0) probably_damaging(0.924) TCGA-D8-A27F-01 6 31611965 31611965 T C BAG6 Missense_Mutation p.Q491R 0.27 deleterious(0.01) probably_damaging(0.914) TCGA-D8-A27F-01 6 36884276 36884276 C G C6orf89 Missense_Mutation p.H258D 0.32 tolerated(0.21) benign(0.002) TCGA-D8-A27F-01 6 41029494 41029494 G A APOBEC2 Missense_Mutation p.V187I 0.32 tolerated(0.3) benign(0.003) TCGA-D8-A27F-01 6 7583101 7583111 CTCAATATTCC - DSP Frame_Shift_Del p.Y1871Gfs*5 0.25 TCGA-D8-A27F-01 7 103183246 103183246 G C RELN Missense_Mutation p.N2201K 0.36 tolerated(0.38) probably_damaging(0.996) TCGA-D8-A27F-01 7 2565139 2565139 G A LFNG Missense_Mutation p.V225I 0.40 tolerated(1) benign(0.014) TCGA-D8-A27F-01 7 55268034 55268034 C A EGFR Silent p.R958R 0.25 TCGA-D8-A27F-01 7 62752982 62752982 T A ZNF733P RNA 0.28 TCGA-D8-A27F-01 8 114326893 114326893 A G CSMD3 Missense_Mutation p.I103T 0.24 deleterious(0) benign(0.266) TCGA-D8-A27F-01 8 12958181 12958181 G T DLC1 Silent p.V555V 0.12 TCGA-D8-A27F-01 8 144547995 144547995 C T ZC3H3 Silent p.L733L 0.15 TCGA-D8-A27F-01 8 41575713 41575713 T C ANK1 Missense_Mutation p.T406A 0.37 deleterious(0) probably_damaging(0.993) TCGA-D8-A27F-01 8 59352284 59352284 G C UBXN2B Missense_Mutation p.R209T 0.41 deleterious(0) possibly_damaging(0.688) TCGA-D8-A27F-01 8 67488508 67488508 C A MYBL1 Nonsense_Mutation p.E402* 0.40 TCGA-D8-A27F-01 8 75276444 75276444 A G GDAP1 Missense_Mutation p.T307A 0.40 tolerated(0.22) benign(0.005) TCGA-D8-A27F-01 8 77764960 77764960 G A ZFHX4 Missense_Mutation p.G1935S 0.46 probably_damaging(0.931) TCGA-D8-A27F-01 9 123943823 123943823 C G RAB14 Missense_Mutation p.E167Q 0.72 tolerated(0.53) benign(0.345) TCGA-D8-A27F-01 9 139265150 139265150 C T CARD9 Missense_Mutation p.D211N 0.56 deleterious(0) possibly_damaging(0.48) TCGA-D8-A27F-01 X 53581746 53581746 C T HUWE1 Missense_Mutation p.G2781E 0.33 benign(0.001) TCGA-D8-A27G-01 10 100503657 100503657 G C HPSE2 Missense_Mutation p.S256C 0.27 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 10 101927112 101927112 C G ERLIN1 Missense_Mutation p.E186Q 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-D8-A27G-01 10 103285793 103285793 G C BTRC Missense_Mutation p.E194Q 0.29 tolerated(0.08) possibly_damaging(0.894) TCGA-D8-A27G-01 10 103569984 103569984 G A MGEA5 Missense_Mutation p.S146F 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 10 104231094 104231094 C T TMEM180 Missense_Mutation p.L257F 0.21 tolerated(0.11) benign(0.082) TCGA-D8-A27G-01 10 105758977 105758977 G A SLK Missense_Mutation p.E230K 0.16 deleterious(0) possibly_damaging(0.831) TCGA-D8-A27G-01 10 1089321 1089321 C T IDI1 Missense_Mutation p.R109Q 0.23 deleterious(0) possibly_damaging(0.853) TCGA-D8-A27G-01 10 112362728 112362728 C T SMC3 Missense_Mutation p.A1148V 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-D8-A27G-01 10 11259429 11259429 G C CELF2 Missense_Mutation p.E105Q 0.11 tolerated(0.06) possibly_damaging(0.676) TCGA-D8-A27G-01 10 113915568 113915568 G A GPAM Intron 0.11 TCGA-D8-A27G-01 10 116049249 116049249 G T VWA2 Missense_Mutation p.G708V 0.14 tolerated_low_confidence(0.36) benign(0) TCGA-D8-A27G-01 10 116055702 116055702 C G AFAP1L2 3'UTR 0.10 TCGA-D8-A27G-01 10 120936582 120936582 C T PRDX3 Silent p.L40L 0.22 TCGA-D8-A27G-01 10 121618682 121618682 C T MCMBP Silent p.L52L 0.33 TCGA-D8-A27G-01 10 127412419 127412419 C T EDRF1 Missense_Mutation p.H142Y 0.21 tolerated(0.07) possibly_damaging(0.713) TCGA-D8-A27G-01 10 129160347 129160347 C A DOCK1 Missense_Mutation p.F1080L 0.12 deleterious(0.01) benign(0.018) TCGA-D8-A27G-01 10 134151163 134151163 G C LRRC27 Missense_Mutation p.R102T 0.29 deleterious(0.02) benign(0.126) TCGA-D8-A27G-01 10 17203488 17203488 G A TRDMT1 Missense_Mutation p.S128F 0.20 deleterious(0) possibly_damaging(0.869) TCGA-D8-A27G-01 10 25701277 25701277 G T GPR158 Missense_Mutation p.D404Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-D8-A27G-01 10 26465629 26465629 G A MYO3A Splice_Site p.X1432_splice 0.13 TCGA-D8-A27G-01 10 27434369 27434369 C T YME1L1 Missense_Mutation p.E164K 0.08 tolerated(0.09) benign(0.284) TCGA-D8-A27G-01 10 28872429 28872429 G C WAC Missense_Mutation p.D126H 0.29 deleterious(0.01) possibly_damaging(0.817) TCGA-D8-A27G-01 10 32561070 32561070 G A EPC1 Missense_Mutation p.S653F 0.09 deleterious(0) probably_damaging(0.93) TCGA-D8-A27G-01 10 43285882 43285882 G C BMS1 Missense_Mutation p.D187H 0.07 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 10 44053111 44053111 C G ZNF239 Missense_Mutation p.Q139H 0.22 tolerated(0.21) benign(0.002) TCGA-D8-A27G-01 10 46999421 46999421 G A GPRIN2 Missense_Mutation p.E181K 0.19 tolerated(0.12) benign(0.002) TCGA-D8-A27G-01 10 50599324 50599324 G A DRGX Silent p.I11I 0.29 TCGA-D8-A27G-01 10 53457842 53457842 G A CSTF2T Nonsense_Mutation p.Q490* 0.21 TCGA-D8-A27G-01 10 5827855 5827855 C G GDI2 Missense_Mutation p.D183H 0.25 deleterious(0) probably_damaging(0.972) TCGA-D8-A27G-01 10 5827883 5827883 C T GDI2 Silent p.K173K 0.26 TCGA-D8-A27G-01 10 60553331 60553331 G A BICC1 Missense_Mutation p.D379N 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-D8-A27G-01 10 60566341 60566341 C T BICC1 Intron 0.17 TCGA-D8-A27G-01 10 61122179 61122179 G A FAM13C Silent p.F14F 0.30 TCGA-D8-A27G-01 10 69299279 69299279 G C CTNNA3 Silent p.L147L 0.10 TCGA-D8-A27G-01 10 73521418 73521418 C G C10orf54 Missense_Mutation p.E150Q 0.27 deleterious(0) probably_damaging(0.961) TCGA-D8-A27G-01 10 75868884 75868884 C T VCL Silent p.L905L 0.43 TCGA-D8-A27G-01 10 75877938 75877938 G C VCL 3'UTR 0.09 TCGA-D8-A27G-01 10 81113562 81113562 G A PPIF Silent p.K196K 0.13 TCGA-D8-A27G-01 10 81374552 81374552 C A SFTPA1 3'Flank 0.21 TCGA-D8-A27G-01 10 85961629 85961629 C G CDHR1 Missense_Mutation p.L198V 0.16 deleterious(0) probably_damaging(0.979) TCGA-D8-A27G-01 10 86185546 86185546 G A CCSER2 Missense_Mutation p.E589K 0.15 deleterious(0.01) possibly_damaging(0.672) TCGA-D8-A27G-01 10 890933 890933 C T LARP4B Missense_Mutation p.E165K 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 10 890992 890992 C A LARP4B Missense_Mutation p.G145V 0.33 deleterious(0.04) benign(0.037) TCGA-D8-A27G-01 10 90332723 90332723 C T RNLS Missense_Mutation p.D155N 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-D8-A27G-01 10 90521981 90521981 G C LIPN Missense_Mutation p.E49Q 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-D8-A27G-01 10 90562570 90562570 G A LIPM 5'UTR 0.20 TCGA-D8-A27G-01 10 94291539 94291539 C T IDE Silent p.G209G 0.23 TCGA-D8-A27G-01 10 96602677 96602677 G A CYP2C19 Missense_Mutation p.D349N 0.33 tolerated(0.09) benign(0.398) TCGA-D8-A27G-01 10 97117484 97117484 C T SORBS1 Missense_Mutation p.E678K 0.29 deleterious(0) probably_damaging(0.995) TCGA-D8-A27G-01 10 98741670 98741670 G C C10orf12 Missense_Mutation p.E175Q 0.21 deleterious(0.04) probably_damaging(0.994) TCGA-D8-A27G-01 11 102932892 102932892 C T DCUN1D5 3'UTR 0.21 TCGA-D8-A27G-01 11 105845130 105845130 G C GRIA4 Missense_Mutation p.E835Q 0.08 deleterious(0) probably_damaging(0.995) TCGA-D8-A27G-01 11 111781132 111781132 C A CRYAB Silent p.V81V 0.23 TCGA-D8-A27G-01 11 115109292 115109292 C G CADM1 Missense_Mutation p.D118H 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 11 118376471 118376471 C T KMT2A Silent p.I3288I 0.25 TCGA-D8-A27G-01 11 118919064 118919064 C T HYOU1 Missense_Mutation p.E758K 0.12 deleterious(0.01) probably_damaging(0.971) TCGA-D8-A27G-01 11 120916442 120916442 G C TBCEL Missense_Mutation p.E15Q 0.24 tolerated(0.12) possibly_damaging(0.637) TCGA-D8-A27G-01 11 122756560 122756560 G C C11orf63 Translation_Start_Site p.M1? 0.45 deleterious(0) probably_damaging(0.923) TCGA-D8-A27G-01 11 124120582 124120582 C A OR8G1 Missense_Mutation p.H54N 0.18 tolerated_low_confidence(0.06) benign(0.025) TCGA-D8-A27G-01 11 18633094 18633094 C T SPTY2D1 Missense_Mutation p.D632N 0.10 deleterious(0) probably_damaging(0.995) TCGA-D8-A27G-01 11 20104613 20104613 C T NAV2 Missense_Mutation p.H1855Y 0.29 tolerated(0.4) probably_damaging(0.989) TCGA-D8-A27G-01 11 28116237 28116237 C T KIF18A Missense_Mutation p.E146K 0.10 tolerated(0.16) benign(0.43) TCGA-D8-A27G-01 11 30032753 30032753 G C KCNA4 Silent p.L491L 0.20 TCGA-D8-A27G-01 11 30033212 30033212 G T KCNA4 Silent p.L338L 0.19 TCGA-D8-A27G-01 11 3069055 3069055 G A CARS Missense_Mutation p.R68W 0.25 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-D8-A27G-01 11 33565327 33565327 C G KIAA1549L Missense_Mutation p.P443A 0.22 tolerated_low_confidence(0.12) benign(0.001) TCGA-D8-A27G-01 11 46810261 46810261 C G CKAP5 Missense_Mutation p.K646N 0.27 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 11 46911990 46911990 C T LRP4 Missense_Mutation p.D585N 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-D8-A27G-01 11 46920202 46920202 C A LRP4 Nonsense_Mutation p.E235* 0.19 TCGA-D8-A27G-01 11 47374181 47374181 C T MYBPC3 Silent p.K6K 0.30 TCGA-D8-A27G-01 11 5275570 5275570 C T HBG2 Silent p.L89L 0.07 TCGA-D8-A27G-01 11 5618077 5618077 G C TRIM6 5'UTR 0.12 TCGA-D8-A27G-01 11 57310448 57310448 G A SMTNL1 Missense_Mutation p.M129I 0.21 tolerated(0.15) benign(0.034) TCGA-D8-A27G-01 11 6024305 6024305 G C OR56A4 Missense_Mutation p.S25C 0.28 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-D8-A27G-01 11 60476149 60476149 C T MS4A8 Silent p.I143I 0.38 TCGA-D8-A27G-01 11 61183744 61183744 G C CPSF7 Silent p.L309L 0.16 TCGA-D8-A27G-01 11 62437402 62437402 G C C11orf48 Silent p.L34L 0.44 TCGA-D8-A27G-01 11 62751042 62751042 G C SLC22A6 Missense_Mutation p.L199V 0.10 tolerated(0.46) benign(0.07) TCGA-D8-A27G-01 11 64802327 64802327 G A SNX15 Missense_Mutation p.E89K 0.58 deleterious(0.01) possibly_damaging(0.731) TCGA-D8-A27G-01 11 66392567 66392567 C T RBM14 Missense_Mutation p.S407L 0.31 deleterious(0.01) unknown(0) TCGA-D8-A27G-01 11 68658793 68658793 C G MRPL21 3'UTR 0.21 TCGA-D8-A27G-01 11 70017024 70017024 C T ANO1 Silent p.V743V 0.04 TCGA-D8-A27G-01 11 70331427 70331427 G C SHANK2 Silent p.L1658L 0.12 TCGA-D8-A27G-01 11 70507864 70507864 C T SHANK2 Intron 0.21 TCGA-D8-A27G-01 11 709572 709572 G T EPS8L2 Missense_Mutation p.D22Y 0.36 deleterious(0.04) possibly_damaging(0.824) TCGA-D8-A27G-01 11 71208553 71208553 G A NADSYN1 Missense_Mutation p.E597K 0.38 deleterious(0) probably_damaging(0.96) TCGA-D8-A27G-01 11 76956516 76956516 G A GDPD4 Missense_Mutation p.S299L 0.04 deleterious(0) possibly_damaging(0.844) TCGA-D8-A27G-01 11 76969566 76969566 G C GDPD4 Silent p.L243L 0.09 TCGA-D8-A27G-01 11 77054952 77054952 G A PAK1 Nonsense_Mutation p.Q304* 0.13 TCGA-D8-A27G-01 11 77103453 77103453 G C PAK1 Missense_Mutation p.S38C 0.08 tolerated(0.17) probably_damaging(0.959) TCGA-D8-A27G-01 11 77396200 77396200 C G RSF1 Missense_Mutation p.E969Q 0.07 deleterious(0.04) possibly_damaging(0.77) TCGA-D8-A27G-01 11 77553522 77553522 C G AAMDC Intron 0.09 TCGA-D8-A27G-01 11 77885525 77885525 C T KCTD21 Missense_Mutation p.D26N 0.15 deleterious(0) benign(0.047) TCGA-D8-A27G-01 11 800427 800427 C G PIDD Missense_Mutation p.R689T 0.36 deleterious(0) probably_damaging(0.979) TCGA-D8-A27G-01 11 8148248 8148248 C G RIC3 Missense_Mutation p.E210Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 11 85436737 85436737 C T SYTL2 Missense_Mutation p.G255R 0.13 tolerated(0.27) benign(0.079) TCGA-D8-A27G-01 11 88338035 88338035 C G GRM5 Missense_Mutation p.Q415H 0.35 tolerated(1) probably_damaging(0.999) TCGA-D8-A27G-01 11 89391855 89391855 C T FOLH1B 5'Flank 0.33 TCGA-D8-A27G-01 12 101491639 101491639 G C ANO4 Missense_Mutation p.G606A 0.20 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 12 102056149 102056149 G C MYBPC1 Missense_Mutation p.E657D 0.22 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 12 104134419 104134419 G C STAB2 Missense_Mutation p.Q1922H 0.37 tolerated(0.13) possibly_damaging(0.553) TCGA-D8-A27G-01 12 108954579 108954579 G A SART3 Intron 0.35 TCGA-D8-A27G-01 12 109316518 109316518 C T SVOP Silent p.L303L 0.27 TCGA-D8-A27G-01 12 109366203 109366203 G C SVOP Nonsense_Mutation p.S79* 0.21 TCGA-D8-A27G-01 12 109700261 109700261 C T ACACB Silent p.L2258L 0.17 TCGA-D8-A27G-01 12 110376308 110376308 G A GIT2 Missense_Mutation p.A627V 0.27 tolerated(0.24) benign(0.001) TCGA-D8-A27G-01 12 110940060 110940060 G T RAD9B 5'UTR 0.29 TCGA-D8-A27G-01 12 111321923 111321923 G A CCDC63 Missense_Mutation p.E315K 0.20 tolerated(0.15) benign(0.023) TCGA-D8-A27G-01 12 113818608 113818608 C T PLBD2 Silent p.I306I 0.24 TCGA-D8-A27G-01 12 114793599 114793599 G A TBX5 Missense_Mutation p.S432L 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-D8-A27G-01 12 114793746 114793746 G C TBX5 Missense_Mutation p.S383C 0.40 deleterious(0) possibly_damaging(0.778) TCGA-D8-A27G-01 12 116406835 116406835 C T MED13L Silent p.G2045G 0.19 TCGA-D8-A27G-01 12 117595778 117595778 C G FBXO21 Missense_Mutation p.E480Q 0.14 tolerated(0.52) benign(0.066) TCGA-D8-A27G-01 12 120638628 120638628 G C RPLP0 5'UTR 0.45 TCGA-D8-A27G-01 12 121220515 121220515 G A SPPL3 Silent p.L149L 0.25 TCGA-D8-A27G-01 12 121858105 121858105 G A RNF34 Missense_Mutation p.D233N 0.27 tolerated(0.51) benign(0.002) TCGA-D8-A27G-01 12 121880471 121880471 C T KDM2B Missense_Mutation p.E925K 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.738) TCGA-D8-A27G-01 12 123065155 123065155 C G KNTC1 Missense_Mutation p.L974V 0.35 tolerated(1) benign(0.001) TCGA-D8-A27G-01 12 12315287 12315287 G C LRP6 Missense_Mutation p.P707A 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 12 123892292 123892292 C G SETD8 3'UTR 0.24 TCGA-D8-A27G-01 12 124171390 124171390 C T TCTN2 Missense_Mutation p.S191L 0.10 deleterious(0.03) benign(0.16) TCGA-D8-A27G-01 12 124414857 124414857 C G DNAH10OS 3'UTR 0.20 TCGA-D8-A27G-01 12 130834474 130834474 G A PIWIL1 Missense_Mutation p.D336N 0.32 deleterious(0.02) benign(0.113) TCGA-D8-A27G-01 12 13221368 13221368 C G KIAA1467 Missense_Mutation p.Q425E 0.15 tolerated(0.93) benign(0.073) TCGA-D8-A27G-01 12 132863000 132863000 G A GALNT9 Silent p.I85I 0.29 TCGA-D8-A27G-01 12 133446307 133446307 C T CHFR Missense_Mutation p.E173K 0.38 deleterious(0.01) possibly_damaging(0.792) TCGA-D8-A27G-01 12 14982329 14982329 G A ART4 Silent p.I307I 0.09 TCGA-D8-A27G-01 12 1890221 1890221 C A ADIPOR2 Missense_Mutation p.Q273K 0.25 tolerated(1) benign(0.006) TCGA-D8-A27G-01 12 20852638 20852638 A C SLCO1C1 Missense_Mutation p.K43T 0.29 deleterious(0) possibly_damaging(0.854) TCGA-D8-A27G-01 12 23728724 23728724 C T SOX5 Missense_Mutation p.D405N 0.24 deleterious(0.01) benign(0.126) TCGA-D8-A27G-01 12 26647139 26647139 C T ITPR2 Missense_Mutation p.E1773K 0.27 tolerated(0.11) possibly_damaging(0.703) TCGA-D8-A27G-01 12 27126946 27126946 G A TM7SF3 Silent p.L555L 0.15 TCGA-D8-A27G-01 12 44191603 44191603 G C TWF1 Missense_Mutation p.Q180E 0.22 deleterious(0) possibly_damaging(0.456) TCGA-D8-A27G-01 12 45803172 45803172 G C ANO6 Missense_Mutation p.R659T 0.11 tolerated(0.62) benign(0.001) TCGA-D8-A27G-01 12 46240701 46240701 G A ARID2 Missense_Mutation p.E521K 0.25 deleterious(0) probably_damaging(0.944) TCGA-D8-A27G-01 12 4736759 4736759 C T AKAP3 Missense_Mutation p.E437K 0.27 tolerated(1) benign(0.124) TCGA-D8-A27G-01 12 4881768 4881768 C G GALNT8 3'UTR 0.33 TCGA-D8-A27G-01 12 49332859 49332859 G A AC073610.5 Silent p.I14I 0.13 TCGA-D8-A27G-01 12 49359873 49359873 G A WNT10B 3'UTR 0.27 TCGA-D8-A27G-01 12 50745916 50745916 G C FAM186A Missense_Mutation p.L1567V 0.24 tolerated(0.18) probably_damaging(0.928) TCGA-D8-A27G-01 12 51737591 51737591 C G CELA1 Missense_Mutation p.G49A 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-D8-A27G-01 12 52380876 52380876 G C ACVR1B Intron 0.06 TCGA-D8-A27G-01 12 53165956 53165956 G A KRT76 Silent p.I353I 0.11 TCGA-D8-A27G-01 12 53895905 53895905 G A TARBP2 Missense_Mutation p.E54K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A27G-01 12 55524223 55524223 C G OR9K2 Missense_Mutation p.S224C 0.30 deleterious(0.03) possibly_damaging(0.852) TCGA-D8-A27G-01 12 57144894 57144894 C G PRIM1 Missense_Mutation p.Q63H 0.11 tolerated(0.07) possibly_damaging(0.76) TCGA-D8-A27G-01 12 57317659 57317659 G A SDR9C7 Silent p.F300F 0.29 TCGA-D8-A27G-01 12 57485216 57485216 C G NAB2 Missense_Mutation p.S131C 0.13 tolerated(0.08) probably_damaging(0.972) TCGA-D8-A27G-01 12 57629349 57629349 G C NDUFA4L2 Missense_Mutation p.F87L 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-D8-A27G-01 12 57919283 57919283 C G MBD6 Missense_Mutation p.L178V 0.21 deleterious_low_confidence(0) unknown(0) TCGA-D8-A27G-01 12 58203467 58203467 G C AVIL Missense_Mutation p.I284M 0.14 deleterious(0.01) possibly_damaging(0.795) TCGA-D8-A27G-01 12 62790158 62790158 G T USP15 Missense_Mutation p.G885V 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 12 62986519 62986519 G C MON2 Missense_Mutation p.G1715A 0.22 tolerated_low_confidence(0.05) possibly_damaging(0.596) TCGA-D8-A27G-01 12 64505738 64505738 G A SRGAP1 Missense_Mutation p.E706K 0.17 deleterious(0.01) benign(0.439) TCGA-D8-A27G-01 12 67691236 67691236 C T CAND1 Missense_Mutation p.L181F 0.22 deleterious(0.03) benign(0.104) TCGA-D8-A27G-01 12 70953346 70953346 G A PTPRB Silent p.I1497I 0.17 TCGA-D8-A27G-01 12 7249361 7249361 C T C1RL Missense_Mutation p.E364K 0.38 tolerated(0.09) benign(0.105) TCGA-D8-A27G-01 12 79689854 79689854 G C SYT1 Silent p.L160L 0.26 TCGA-D8-A27G-01 12 80935445 80935445 C G PTPRQ Nonsense_Mutation p.S1085* 0.16 TCGA-D8-A27G-01 12 81205439 81205439 C G LIN7A Missense_Mutation p.E169D 0.21 deleterious(0) possibly_damaging(0.874) TCGA-D8-A27G-01 12 85626496 85626496 G C LRRIQ1 Missense_Mutation p.D1660H 0.25 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 12 8670867 8670867 G A CLEC4D Missense_Mutation p.E77K 0.31 tolerated(0.69) benign(0.004) TCGA-D8-A27G-01 12 90036112 90036112 C G ATP2B1 Missense_Mutation p.D77H 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 12 91347316 91347316 G C CCER1 Missense_Mutation p.Q402E 0.05 tolerated(0.97) unknown(0) TCGA-D8-A27G-01 12 93210085 93210085 G A EEA1 Missense_Mutation p.A607V 0.26 tolerated(0.06) benign(0.011) TCGA-D8-A27G-01 12 95689989 95689989 G C VEZT Missense_Mutation p.E596Q 0.30 deleterious(0) probably_damaging(0.91) TCGA-D8-A27G-01 12 96691099 96691099 C T CDK17 Silent p.L274L 0.29 TCGA-D8-A27G-01 12 990106 990106 C T WNK1 Nonsense_Mutation p.Q1018* 0.09 TCGA-D8-A27G-01 12 99166817 99166817 C T ANKS1B Intron 0.15 TCGA-D8-A27G-01 12 99837459 99837459 G A ANKS1B Nonsense_Mutation p.R523* 0.30 TCGA-D8-A27G-01 13 100211679 100211679 C G TM9SF2 Missense_Mutation p.I605M 0.27 tolerated(0.18) benign(0.363) TCGA-D8-A27G-01 13 103459616 103459616 C T BIVM 5'UTR 0.30 TCGA-D8-A27G-01 13 103701638 103701638 C A SLC10A2 Splice_Site p.X307_splice 0.07 TCGA-D8-A27G-01 13 107220013 107220013 G A ARGLU1 Silent p.F85F 0.24 TCGA-D8-A27G-01 13 109707850 109707850 C T MYO16 Missense_Mutation p.S1059F 0.14 tolerated(0.08) probably_damaging(1) TCGA-D8-A27G-01 13 111125395 111125395 G A COL4A2 Missense_Mutation p.E775K 0.33 benign(0.061) TCGA-D8-A27G-01 13 114537535 114537535 C A GAS6 Missense_Mutation p.D275Y 0.21 deleterious(0) possibly_damaging(0.748) TCGA-D8-A27G-01 13 115048332 115048332 C T UPF3A Missense_Mutation p.S112L 0.21 deleterious(0) probably_damaging(0.986) TCGA-D8-A27G-01 13 20601421 20601421 A T ZMYM2 Missense_Mutation p.Y605F 0.21 tolerated(0.26) probably_damaging(0.995) TCGA-D8-A27G-01 13 25479707 25479707 C T CENPJ Silent p.Q823Q 0.16 TCGA-D8-A27G-01 13 30077140 30077140 G A MTUS2 Missense_Mutation p.E1313K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A27G-01 13 31338322 31338322 C T ALOX5AP 3'UTR 0.10 TCGA-D8-A27G-01 13 31803344 31803344 C A B3GALTL Silent p.V61V 0.20 TCGA-D8-A27G-01 13 32366114 32366114 G A RXFP2 Missense_Mutation p.M439I 0.27 deleterious(0) benign(0.365) TCGA-D8-A27G-01 13 32915015 32915015 G C BRCA2 Missense_Mutation p.E2175Q 0.24 tolerated(0.07) probably_damaging(0.947) TCGA-D8-A27G-01 13 39265301 39265301 G A FREM2 Missense_Mutation p.E1274K 0.09 deleterious(0.03) benign(0.082) TCGA-D8-A27G-01 13 41383721 41383721 G A SLC25A15 Missense_Mutation p.R275Q 0.09 deleterious(0) probably_damaging(0.996) TCGA-D8-A27G-01 13 46658437 46658437 C G CPB2 Missense_Mutation p.K64N 0.27 tolerated(0.37) probably_damaging(0.961) TCGA-D8-A27G-01 13 49086237 49086237 C G RCBTB2 Missense_Mutation p.R197T 0.07 deleterious(0.03) benign(0.071) TCGA-D8-A27G-01 13 50129757 50129757 G C RCBTB1 Missense_Mutation p.A166G 0.20 tolerated(0.14) benign(0.033) TCGA-D8-A27G-01 13 51287277 51287277 C T DLEU7 3'UTR 0.25 TCGA-D8-A27G-01 13 75880569 75880569 C G TBC1D4 Missense_Mutation p.D878H 0.33 deleterious(0.02) possibly_damaging(0.899) TCGA-D8-A27G-01 13 79209249 79209249 G C RNF219 Missense_Mutation p.Q212E 0.22 deleterious(0.01) benign(0.188) TCGA-D8-A27G-01 13 88328417 88328417 G A SLITRK5 Silent p.L258L 0.17 TCGA-D8-A27G-01 14 102376010 102376010 C G PPP2R5C Missense_Mutation p.F443L 0.24 deleterious(0) benign(0.036) TCGA-D8-A27G-01 14 104387343 104387343 C G C14orf2 5'UTR 0.18 TCGA-D8-A27G-01 14 104571705 104571705 C T ASPG Missense_Mutation p.S364L 0.27 tolerated(0.24) benign(0.001) TCGA-D8-A27G-01 14 106586182 106586182 C T IGHV3-13 Missense_Mutation p.M101I 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.455) TCGA-D8-A27G-01 14 107283265 107283265 G A IGHV7-81 5'UTR 0.26 TCGA-D8-A27G-01 14 21544955 21544955 A G ARHGEF40 Missense_Mutation p.N647S 0.36 tolerated(0.52) benign(0.001) TCGA-D8-A27G-01 14 22133391 22133391 C A OR4E2 Nonsense_Mutation p.S32* 0.15 TCGA-D8-A27G-01 14 22554690 22554690 G C TRAV23DV6 5'UTR 0.23 TCGA-D8-A27G-01 14 23457139 23457139 C G C14orf93 Missense_Mutation p.E390D 0.22 tolerated_low_confidence(0.08) benign(0.146) TCGA-D8-A27G-01 14 23634501 23634501 G C SLC7A8 Missense_Mutation p.I167M 0.14 tolerated(0.12) benign(0.398) TCGA-D8-A27G-01 14 24534912 24534912 C T LRRC16B Missense_Mutation p.P1160S 0.29 tolerated(0.31) unknown(0) TCGA-D8-A27G-01 14 35782183 35782183 G A PSMA6 Missense_Mutation p.G169E 0.13 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 14 36133961 36133961 C T RALGAPA1 Missense_Mutation p.E1233K 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-D8-A27G-01 14 36147276 36147276 G C RALGAPA1 Missense_Mutation p.L996V 0.23 tolerated(0.51) benign(0.295) TCGA-D8-A27G-01 14 38016173 38016173 C G MIPOL1 Missense_Mutation p.I442M 0.32 deleterious(0) possibly_damaging(0.847) TCGA-D8-A27G-01 14 39815162 39815162 C T CTAGE5 Missense_Mutation p.S634F 0.19 deleterious(0.03) possibly_damaging(0.642) TCGA-D8-A27G-01 14 39871049 39871049 C T FBXO33 Missense_Mutation p.E243K 0.24 tolerated(0.48) possibly_damaging(0.787) TCGA-D8-A27G-01 14 50671070 50671070 C A SOS2 Nonsense_Mutation p.E49* 0.11 TCGA-D8-A27G-01 14 51721100 51721100 G A TMX1 Missense_Mutation p.E236K 0.28 tolerated(0.19) benign(0.276) TCGA-D8-A27G-01 14 55453880 55453880 G T WDHD1 Missense_Mutation p.F584L 0.16 tolerated(1) benign(0.001) TCGA-D8-A27G-01 14 55611885 55611885 C T LGALS3 Missense_Mutation p.H217Y 0.11 deleterious(0.03) possibly_damaging(0.861) TCGA-D8-A27G-01 14 56101368 56101368 C T KTN1 Nonsense_Mutation p.Q485* 0.17 TCGA-D8-A27G-01 14 57268630 57268630 G A OTX2 Silent p.L239L 0.06 TCGA-D8-A27G-01 14 60619764 60619764 G A DHRS7 Missense_Mutation p.H176Y 0.17 tolerated(0.08) benign(0.12) TCGA-D8-A27G-01 14 63757637 63757637 G A RHOJ Silent p.Q180Q 0.12 TCGA-D8-A27G-01 14 64153287 64153287 G C SGPP1 Missense_Mutation p.H288D 0.33 tolerated(0.33) benign(0.009) TCGA-D8-A27G-01 14 67810151 67810151 G C ATP6V1D Missense_Mutation p.S154C 0.26 tolerated(0.07) benign(0.33) TCGA-D8-A27G-01 14 68129245 68129245 C A VTI1B Missense_Mutation p.K41N 0.26 deleterious(0) benign(0.119) TCGA-D8-A27G-01 14 72175942 72175942 G C SIPA1L1 Missense_Mutation p.D1278H 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A27G-01 14 72431492 72431492 G A RGS6 5'UTR 0.23 TCGA-D8-A27G-01 14 72985156 72985156 C G RGS6 Missense_Mutation p.P397A 0.13 tolerated(0.08) benign(0.047) TCGA-D8-A27G-01 14 77900251 77900251 C T VIPAS39 Silent p.L371L 0.18 TCGA-D8-A27G-01 14 77978728 77978728 C T SPTLC2 Missense_Mutation p.E530K 0.26 tolerated(0.12) benign(0.077) TCGA-D8-A27G-01 14 81993170 81993170 C G SEL1L Missense_Mutation p.E83Q 0.19 tolerated_low_confidence(0.09) benign(0.38) TCGA-D8-A27G-01 14 91745599 91745599 G A CCDC88C Missense_Mutation p.S1584L 0.12 deleterious(0.01) possibly_damaging(0.87) TCGA-D8-A27G-01 14 91791240 91791240 C T CCDC88C Missense_Mutation p.E409K 0.14 deleterious(0.01) probably_damaging(1) TCGA-D8-A27G-01 14 91792295 91792295 C T CCDC88C Missense_Mutation p.E386K 0.10 deleterious(0) probably_damaging(0.977) TCGA-D8-A27G-01 14 92583859 92583859 C G NDUFB1 Missense_Mutation p.K88N 0.20 deleterious(0) possibly_damaging(0.895) TCGA-D8-A27G-01 14 92583888 92583888 C A NDUFB1 Missense_Mutation p.D79Y 0.18 deleterious(0) probably_damaging(0.979) TCGA-D8-A27G-01 14 94125583 94125583 G C UNC79 Missense_Mutation p.K2029N 0.13 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 14 94400858 94400858 G C ASB2 3'UTR 0.31 TCGA-D8-A27G-01 14 95569715 95569715 C G DICER1 Missense_Mutation p.E1340Q 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 14 96707899 96707899 C T BDKRB2 3'UTR 0.20 TCGA-D8-A27G-01 14 96730027 96730027 C T BDKRB1 Missense_Mutation p.S3L 0.09 deleterious_low_confidence(0.03) benign(0.001) TCGA-D8-A27G-01 14 96788996 96788996 C T ATG2B Missense_Mutation p.D873N 0.11 tolerated(0.19) benign(0.379) TCGA-D8-A27G-01 15 28517375 28517375 C T HERC2 Missense_Mutation p.E357K 0.14 benign(0.358) TCGA-D8-A27G-01 15 33149276 33149276 C G FMN1 Missense_Mutation p.E1067Q 0.18 tolerated(0.26) probably_damaging(0.92) TCGA-D8-A27G-01 15 33825550 33825550 C A RYR3 Missense_Mutation p.D131E 0.19 probably_damaging(0.979) TCGA-D8-A27G-01 15 34382543 34382543 C T EMC7 Nonsense_Mutation p.W157* 0.28 TCGA-D8-A27G-01 15 34396107 34396107 C G PGBD4 Missense_Mutation p.L459V 0.12 tolerated(0.07) probably_damaging(0.941) TCGA-D8-A27G-01 15 35256470 35256470 G A AQR Missense_Mutation p.P33S 0.26 tolerated(0.09) benign(0.119) TCGA-D8-A27G-01 15 40865863 40865863 G T RPUSD2 Silent p.V347V 0.12 TCGA-D8-A27G-01 15 43502614 43502614 G A EPB42 Silent p.L221L 0.14 TCGA-D8-A27G-01 15 43701291 43701292 - A TP53BP1 Frame_Shift_Ins p.N1802* 0.21 TCGA-D8-A27G-01 15 48703211 48703211 C T FBN1 Missense_Mutation p.M2864I 0.24 probably_damaging(0.914) TCGA-D8-A27G-01 15 49048259 49048259 G A CEP152 Silent p.I1062I 0.28 TCGA-D8-A27G-01 15 51778354 51778354 G A DMXL2 Missense_Mutation p.L1800F 0.14 deleterious(0) possibly_damaging(0.786) TCGA-D8-A27G-01 15 53080980 53080980 C G ONECUT1 Missense_Mutation p.A368P 0.43 deleterious(0.01) benign(0.311) TCGA-D8-A27G-01 15 53081051 53081051 C T ONECUT1 Missense_Mutation p.R344Q 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 15 63449714 63449714 G C RPS27L 5'UTR 0.26 TCGA-D8-A27G-01 15 63964894 63964894 C G HERC1 Splice_Site p.X2616_splice 0.28 TCGA-D8-A27G-01 15 64017704 64017704 C T HERC1 Missense_Mutation p.E1119K 0.29 benign(0.013) TCGA-D8-A27G-01 15 65790229 65790229 C T DPP8 Missense_Mutation p.E246K 0.10 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 15 67692531 67692531 G A IQCH Missense_Mutation p.R662Q 0.28 deleterious(0.01) benign(0.003) TCGA-D8-A27G-01 15 68118403 68118403 G C SKOR1 Missense_Mutation p.E265D 0.17 tolerated_low_confidence(0.05) possibly_damaging(0.832) TCGA-D8-A27G-01 15 73996053 73996053 G A CD276 Missense_Mutation p.D263N 0.31 deleterious(0.02) possibly_damaging(0.749) TCGA-D8-A27G-01 15 75042079 75042079 G A CYP1A2 5'UTR 0.19 TCGA-D8-A27G-01 15 78585121 78585121 C G WDR61 Missense_Mutation p.E52D 0.31 tolerated(0.55) benign(0) TCGA-D8-A27G-01 15 78778155 78778155 G C IREB2 Missense_Mutation p.G561A 0.27 deleterious(0) probably_damaging(0.962) TCGA-D8-A27G-01 15 81217032 81217032 C T KIAA1199 Missense_Mutation p.S758L 0.16 deleterious(0.03) benign(0.407) TCGA-D8-A27G-01 15 83677321 83677321 C A C15orf40 Missense_Mutation p.K115N 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-D8-A27G-01 15 84539660 84539660 G A ADAMTSL3 Silent p.E303E 0.21 TCGA-D8-A27G-01 15 84539697 84539697 G C ADAMTSL3 Missense_Mutation p.D316H 0.28 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 15 86077099 86077099 C T AKAP13 Nonsense_Mutation p.Q156* 0.33 TCGA-D8-A27G-01 15 86207934 86207934 C A AKAP13 Nonsense_Mutation p.S1651* 0.27 TCGA-D8-A27G-01 15 89414699 89414699 G C ACAN Missense_Mutation p.E2345Q 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 15 91453858 91453858 C T MAN2A2 Missense_Mutation p.H569Y 0.21 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 15 91551139 91551139 C G VPS33B Silent p.L153L 0.25 TCGA-D8-A27G-01 16 10989596 10989596 G C CIITA Missense_Mutation p.E90D 0.23 tolerated(0.2) benign(0.359) TCGA-D8-A27G-01 16 11862259 11862259 G C ZC3H7A Silent p.T424T 0.24 TCGA-D8-A27G-01 16 1412861 1412861 G A GNPTG Silent p.L259L 0.17 TCGA-D8-A27G-01 16 15155582 15155582 C G RRN3 3'UTR 0.24 TCGA-D8-A27G-01 16 160604 160604 C G NPRL3 Missense_Mutation p.G183A 0.21 tolerated(1) benign(0.001) TCGA-D8-A27G-01 16 1712533 1712533 C G CRAMP1L Missense_Mutation p.S819C 0.37 deleterious(0.01) probably_damaging(0.914) TCGA-D8-A27G-01 16 18827805 18827805 G C SMG1 Nonsense_Mutation p.S3374* 0.11 TCGA-D8-A27G-01 16 18895441 18895441 G C SMG1 Missense_Mutation p.S357C 0.20 deleterious(0) probably_damaging(0.993) TCGA-D8-A27G-01 16 22103961 22103961 G A VWA3A Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.019) TCGA-D8-A27G-01 16 22545362 22545362 C T NPIPB5 Missense_Mutation p.S353L 0.18 deleterious_low_confidence(0.03) probably_damaging(0.931) TCGA-D8-A27G-01 16 23641648 23641648 G A PALB2 Silent p.I609I 0.22 TCGA-D8-A27G-01 16 24674573 24674573 G A AC012317.1 RNA 0.26 TCGA-D8-A27G-01 16 2636750 2636750 C A PDPK1 Missense_Mutation p.S400Y 0.14 deleterious(0.04) benign(0.019) TCGA-D8-A27G-01 16 29982865 29982865 G A TMEM219 Silent p.%3D 0.25 TCGA-D8-A27G-01 16 30080850 30080850 G A ALDOA Missense_Mutation p.D273N 0.26 deleterious(0) benign(0.194) TCGA-D8-A27G-01 16 30369442 30369442 C T TBC1D10B Silent p.E750E 0.09 TCGA-D8-A27G-01 16 30495230 30495230 G A ITGAL Missense_Mutation p.D269N 0.22 deleterious(0.01) benign(0.097) TCGA-D8-A27G-01 16 3077655 3077655 C T THOC6 Silent p.F341F 0.29 TCGA-D8-A27G-01 16 31405554 31405554 C G ITGAD Intron 0.11 TCGA-D8-A27G-01 16 33020940 33020940 G A IGHV3OR16-8 Silent p.V116V 0.08 TCGA-D8-A27G-01 16 3900518 3900518 G C CREBBP Missense_Mutation p.S193C 0.12 probably_damaging(0.991) TCGA-D8-A27G-01 16 47162345 47162345 C G NETO2 Silent p.V124V 0.18 TCGA-D8-A27G-01 16 48174608 48174608 G C ABCC12 Missense_Mutation p.S216C 0.31 deleterious(0) probably_damaging(0.987) TCGA-D8-A27G-01 16 5122995 5122995 G T ALG1 Missense_Mutation p.Q84H 0.32 tolerated(0.27) benign(0.003) TCGA-D8-A27G-01 16 55364348 55364348 G A IRX6 3'UTR 0.28 TCGA-D8-A27G-01 16 55729244 55729244 C T SLC6A2 Silent p.F359F 0.38 TCGA-D8-A27G-01 16 55905576 55905576 G C CES5A Missense_Mutation p.I155M 0.44 deleterious(0.01) probably_damaging(0.966) TCGA-D8-A27G-01 16 58742041 58742041 G C GOT2 3'UTR 0.22 TCGA-D8-A27G-01 16 67709771 67709771 C T GFOD2 Missense_Mutation p.D149N 0.21 deleterious(0) possibly_damaging(0.652) TCGA-D8-A27G-01 16 68842438 68842439 - A CDH1 Frame_Shift_Ins p.G169Rfs*5 0.29 TCGA-D8-A27G-01 16 69776233 69776233 C A NOB1 3'UTR 0.47 TCGA-D8-A27G-01 16 71098709 71098709 C G HYDIN Missense_Mutation p.E704Q 0.28 probably_damaging(0.948) TCGA-D8-A27G-01 16 773019 773019 C G CCDC78 Splice_Site p.X401_splice 0.22 TCGA-D8-A27G-01 17 15406381 15406381 C T TVP23C Missense_Mutation p.D210N 0.42 tolerated(0.35) benign(0.043) TCGA-D8-A27G-01 17 15620239 15620239 C G ZNF286A Missense_Mutation p.Q401E 0.16 deleterious(0) possibly_damaging(0.691) TCGA-D8-A27G-01 17 15620485 15620485 C A ZNF286A Missense_Mutation p.Q483K 0.07 tolerated(0.51) probably_damaging(0.992) TCGA-D8-A27G-01 17 16075194 16075194 G A NCOR1 Nonsense_Mutation p.Q120* 0.17 TCGA-D8-A27G-01 17 16612317 16612317 G A CCDC144A Missense_Mutation p.E316K 0.11 tolerated(0.17) possibly_damaging(0.636) TCGA-D8-A27G-01 17 16638743 16638743 G A CCDC144A Missense_Mutation p.R1053Q 0.17 tolerated(0.21) benign(0.005) TCGA-D8-A27G-01 17 17083362 17083362 G C MPRIP Missense_Mutation p.R1002T 0.11 tolerated_low_confidence(0.05) possibly_damaging(0.45) TCGA-D8-A27G-01 17 18088022 18088022 C G ALKBH5 Silent p.L155L 0.11 TCGA-D8-A27G-01 17 18181268 18181268 C G TOP3A Missense_Mutation p.D850H 0.19 deleterious(0) probably_damaging(0.938) TCGA-D8-A27G-01 17 18181566 18181566 C G TOP3A Silent p.L750L 0.10 TCGA-D8-A27G-01 17 19576546 19576546 G A ALDH3A2 Silent p.%3D 0.41 TCGA-D8-A27G-01 17 19720149 19720149 C G ULK2 Missense_Mutation p.D337H 0.11 deleterious(0) possibly_damaging(0.738) TCGA-D8-A27G-01 17 19843048 19843048 C T AKAP10 Missense_Mutation p.D434N 0.15 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 17 21319099 21319099 C T KCNJ12 Missense_Mutation p.R149C 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 17 25974091 25974091 G A LGALS9 Silent p.L235L 0.27 TCGA-D8-A27G-01 17 26888531 26888531 C G PIGS Missense_Mutation p.L195F 0.13 tolerated(1) benign(0.044) TCGA-D8-A27G-01 17 27425981 27425981 C G MYO18A Missense_Mutation p.D1215H 0.28 deleterious(0.05) probably_damaging(0.954) TCGA-D8-A27G-01 17 35902444 35902444 G A SYNRG Silent p.L944L 0.36 TCGA-D8-A27G-01 17 37880257 37880257 C G ERBB2 Missense_Mutation p.I767M 0.06 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 17 38153808 38153808 G T PSMD3 Nonsense_Mutation p.E527* 0.38 TCGA-D8-A27G-01 17 38506062 38506062 G A RARA Silent p.K118K 0.27 TCGA-D8-A27G-01 17 38816249 38816249 C G KRT222 Missense_Mutation p.E146Q 0.25 tolerated(0.09) probably_damaging(0.949) TCGA-D8-A27G-01 17 38859392 38859392 T A KRT24 Missense_Mutation p.D185V 0.18 tolerated(0.09) possibly_damaging(0.647) TCGA-D8-A27G-01 17 39394360 39394360 G C KRTAP9-8 Missense_Mutation p.W19C 0.17 tolerated(1) unknown(0) TCGA-D8-A27G-01 17 4005621 4005621 C T ZZEF1 Nonsense_Mutation p.W554* 0.29 TCGA-D8-A27G-01 17 40962867 40962867 C T BECN1 Missense_Mutation p.E422K 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 17 41143193 41143193 G A RUNDC1 Silent p.V434V 0.39 TCGA-D8-A27G-01 17 43535797 43535797 C G PLEKHM1 Missense_Mutation p.K439N 0.12 tolerated(0.06) benign(0.282) TCGA-D8-A27G-01 17 43587646 43587646 C T LRRC37A4P RNA 0.10 TCGA-D8-A27G-01 17 43587660 43587660 C A LRRC37A4P Splice_Site 0.11 TCGA-D8-A27G-01 17 44051778 44051778 G A MAPT Missense_Mutation p.G83E 0.23 tolerated(0.1) benign(0.026) TCGA-D8-A27G-01 17 45893814 45893814 G A OSBPL7 Silent p.L321L 0.14 TCGA-D8-A27G-01 17 46863601 46863601 C G TTLL6 Silent p.V562V 0.17 TCGA-D8-A27G-01 17 47653553 47653553 G C NXPH3 5'UTR 0.10 TCGA-D8-A27G-01 17 48597009 48597009 G A MYCBPAP Silent p.E302E 0.14 TCGA-D8-A27G-01 17 48776873 48776873 G A ANKRD40 Missense_Mutation p.S222F 0.13 tolerated(0.08) benign(0.365) TCGA-D8-A27G-01 17 49244296 49244296 C A NME1-NME2 Silent p.L150L 0.17 TCGA-D8-A27G-01 17 54526461 54526461 G A ANKFN1 Missense_Mutation p.R377K 0.19 tolerated(0.33) benign(0.071) TCGA-D8-A27G-01 17 57682903 57682903 G C DHX40 Missense_Mutation p.E690Q 0.06 tolerated(0.2) benign(0.275) TCGA-D8-A27G-01 17 57752127 57752127 C A CLTC Silent p.V828V 0.06 TCGA-D8-A27G-01 17 57970672 57970672 G A RPS6KB1 Missense_Mutation p.E43K 0.15 tolerated(0.06) benign(0.257) TCGA-D8-A27G-01 17 60062382 60062382 G A MED13 Silent p.L819L 0.11 TCGA-D8-A27G-01 17 60518038 60518038 G C METTL2A Missense_Mutation p.E244Q 0.13 tolerated(0.7) benign(0.016) TCGA-D8-A27G-01 17 60526195 60526195 C T METTL2A 3'UTR 0.11 TCGA-D8-A27G-01 17 61570849 61570849 G C ACE Missense_Mutation p.E989Q 0.18 tolerated(0.23) probably_damaging(0.95) TCGA-D8-A27G-01 17 61829734 61829734 C A CCDC47 Missense_Mutation p.M383I 0.19 deleterious(0.03) benign(0.248) TCGA-D8-A27G-01 17 61864561 61864561 C G DDX42 Nonsense_Mutation p.S51* 0.18 TCGA-D8-A27G-01 17 61876968 61876968 G A DDX42 Missense_Mutation p.E152K 0.16 deleterious(0) probably_damaging(0.937) TCGA-D8-A27G-01 17 62492750 62492750 C A POLG2 Nonsense_Mutation p.E113* 0.15 TCGA-D8-A27G-01 17 62893314 62893314 G A LRRC37A3 Missense_Mutation p.P21L 0.06 tolerated(0.06) benign(0.001) TCGA-D8-A27G-01 17 63010824 63010824 C T GNA13 Missense_Mutation p.E229K 0.08 deleterious(0) possibly_damaging(0.868) TCGA-D8-A27G-01 17 65147231 65147231 G A HELZ Missense_Mutation p.L763F 0.14 deleterious(0.04) probably_damaging(0.953) TCGA-D8-A27G-01 17 65850193 65850193 G A BPTF Missense_Mutation p.E251K 0.16 probably_damaging(0.999) TCGA-D8-A27G-01 17 65989338 65989338 G A C17orf58 5'UTR 0.29 TCGA-D8-A27G-01 17 66246373 66246373 C T AMZ2 Silent p.L15L 0.11 TCGA-D8-A27G-01 17 66267692 66267692 G T SLC16A6 Silent p.I203I 0.18 TCGA-D8-A27G-01 17 66339821 66339821 C T ARSG Missense_Mutation p.R99C 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 17 67186589 67186589 C T ABCA10 Missense_Mutation p.D681N 0.12 tolerated(0.54) benign(0.009) TCGA-D8-A27G-01 17 67189676 67189676 C G ABCA10 Missense_Mutation p.K533N 0.27 deleterious(0.01) possibly_damaging(0.896) TCGA-D8-A27G-01 17 71282177 71282177 C G CDC42EP4 Missense_Mutation p.E155Q 0.29 tolerated(0.26) benign(0.007) TCGA-D8-A27G-01 17 73872388 73872388 C G TRIM47 Missense_Mutation p.Q319H 0.56 tolerated(0.53) benign(0) TCGA-D8-A27G-01 17 74084200 74084200 C T EXOC7 Missense_Mutation p.D486N 0.26 tolerated(0.05) benign(0.103) TCGA-D8-A27G-01 17 74392483 74392483 C G UBE2O Missense_Mutation p.E845D 0.17 tolerated(0.07) probably_damaging(0.97) TCGA-D8-A27G-01 17 76045967 76045967 C T TNRC6C Missense_Mutation p.S275L 0.23 deleterious(0.01) possibly_damaging(0.611) TCGA-D8-A27G-01 17 78280205 78280205 C T RNF213 Silent p.I788I 0.29 TCGA-D8-A27G-01 17 79966993 79966993 G A ASPSCR1 Silent p.A338A 0.30 TCGA-D8-A27G-01 17 80053314 80053314 C T FASN Silent p.L54L 0.29 TCGA-D8-A27G-01 17 80386446 80386446 C G HEXDC Missense_Mutation p.I69M 0.12 deleterious(0.01) possibly_damaging(0.839) TCGA-D8-A27G-01 17 8402638 8402638 C T MYH10 Missense_Mutation p.E1301K 0.09 possibly_damaging(0.775) TCGA-D8-A27G-01 17 8424485 8424485 G A MYH10 Silent p.L692L 0.34 TCGA-D8-A27G-01 18 10807218 10807218 G A PIEZO2 Silent p.I324I 0.23 TCGA-D8-A27G-01 18 13742650 13742650 G A RNMT Missense_Mutation p.E380K 0.30 tolerated(0.99) benign(0.122) TCGA-D8-A27G-01 18 20817196 20817196 T C CABLES1 Missense_Mutation p.F478S 0.18 deleterious(0) probably_damaging(0.918) TCGA-D8-A27G-01 18 23866325 23866325 G A TAF4B Silent p.V484V 0.31 TCGA-D8-A27G-01 18 23901147 23901147 C T TAF4B Nonsense_Mutation p.R706* 0.25 TCGA-D8-A27G-01 18 2666919 2666919 C T SMCHD1 Nonsense_Mutation p.Q105* 0.21 TCGA-D8-A27G-01 18 3094176 3094176 C T MYOM1 Missense_Mutation p.E1286K 0.31 tolerated(0.36) benign(0.015) TCGA-D8-A27G-01 18 33243615 33243615 C T GALNT1 Missense_Mutation p.H55Y 0.23 tolerated(0.57) benign(0.002) TCGA-D8-A27G-01 18 45368211 45368211 G C SMAD2 Nonsense_Mutation p.S464* 0.28 TCGA-D8-A27G-01 18 53252513 53252513 G A TCF4 Missense_Mutation p.S150L 0.21 deleterious(0) possibly_damaging(0.558) TCGA-D8-A27G-01 18 55816683 55816683 C T NEDD4L Intron 0.15 TCGA-D8-A27G-01 18 56063580 56063580 G A NEDD4L 3'UTR 0.19 TCGA-D8-A27G-01 18 60384485 60384485 C G PHLPP1 Missense_Mutation p.F523L 0.39 deleterious(0.02) benign(0.035) TCGA-D8-A27G-01 18 6965413 6965413 C G LAMA1 Missense_Mutation p.E2357Q 0.23 deleterious(0) probably_damaging(0.992) TCGA-D8-A27G-01 18 72999858 72999858 G A TSHZ1 Silent p.L787L 0.36 TCGA-D8-A27G-01 18 74620457 74620457 C T ZNF236 Nonsense_Mutation p.Q825* 0.44 TCGA-D8-A27G-01 18 77737612 77737612 G A TXNL4A Silent p.V81V 0.20 TCGA-D8-A27G-01 19 11031748 11031748 G C CARM1 Missense_Mutation p.L520F 0.17 deleterious_low_confidence(0.05) benign(0.208) TCGA-D8-A27G-01 19 11832709 11832709 C T ZNF823 Missense_Mutation p.R547K 0.31 deleterious(0.05) probably_damaging(0.998) TCGA-D8-A27G-01 19 12060404 12060404 C T ZNF700 Missense_Mutation p.S522L 0.31 tolerated(0.19) benign(0.05) TCGA-D8-A27G-01 19 12090753 12090753 C T ZNF763 3'UTR 0.30 TCGA-D8-A27G-01 19 12780198 12780198 G C WDR83OS Missense_Mutation p.S7W 0.19 deleterious(0) possibly_damaging(0.818) TCGA-D8-A27G-01 19 13216367 13216367 C T TRMT1 Missense_Mutation p.R546Q 0.24 tolerated(0.5) benign(0.002) TCGA-D8-A27G-01 19 14080838 14080838 G T RFX1 Missense_Mutation p.F488L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A27G-01 19 15198731 15198731 C G OR1I1 Silent p.L285L 0.26 TCGA-D8-A27G-01 19 15271380 15271380 G A NOTCH3 3'UTR 0.27 TCGA-D8-A27G-01 19 16593368 16593368 G A CALR3 Missense_Mutation p.H271Y 0.16 tolerated(1) benign(0.254) TCGA-D8-A27G-01 19 17313011 17313011 G A MYO9B Missense_Mutation p.E1579K 0.27 tolerated(0.2) benign(0.034) TCGA-D8-A27G-01 19 17449538 17449538 G C GTPBP3 Missense_Mutation p.E193D 0.36 tolerated(0.17) benign(0.02) TCGA-D8-A27G-01 19 17949086 17949086 C T JAK3 Missense_Mutation p.D519N 0.10 deleterious(0.03) benign(0.004) TCGA-D8-A27G-01 19 17950341 17950341 C T JAK3 Silent p.L462L 0.22 TCGA-D8-A27G-01 19 19206910 19206910 C T SLC25A42 5'UTR 0.15 TCGA-D8-A27G-01 19 20307957 20307957 G C ZNF486 Missense_Mutation p.L146F 0.12 tolerated(0.1) probably_damaging(0.991) TCGA-D8-A27G-01 19 21132571 21132571 G C ZNF85 Missense_Mutation p.K417N 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-D8-A27G-01 19 21990526 21990526 G T ZNF43 Missense_Mutation p.F771L 0.10 deleterious(0.01) probably_damaging(0.923) TCGA-D8-A27G-01 19 22155976 22155976 C G ZNF208 Missense_Mutation p.K620N 0.27 tolerated(0.46) benign(0.002) TCGA-D8-A27G-01 19 31768073 31768073 C T TSHZ3 Missense_Mutation p.G876R 0.39 deleterious(0.04) probably_damaging(1) TCGA-D8-A27G-01 19 33572169 33572169 G C GPATCH1 Missense_Mutation p.E24Q 0.32 deleterious(0.01) possibly_damaging(0.836) TCGA-D8-A27G-01 19 34832394 34832394 G T KIAA0355 Missense_Mutation p.D519Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-D8-A27G-01 19 36135560 36135560 C T ETV2 Missense_Mutation p.R279W 0.29 deleterious(0) probably_damaging(0.988) TCGA-D8-A27G-01 19 36293136 36293136 G A PRODH2 Silent p.F461F 0.28 TCGA-D8-A27G-01 19 36394703 36394703 C T HCST Silent p.L47L 0.24 TCGA-D8-A27G-01 19 3744005 3744005 G C TJP3 Missense_Mutation p.E647Q 0.10 deleterious(0.01) probably_damaging(0.94) TCGA-D8-A27G-01 19 39070708 39070708 C G RYR1 Missense_Mutation p.I4817M 0.17 unknown(0) TCGA-D8-A27G-01 19 39880904 39880904 C A PAF1 Nonsense_Mutation p.E25* 0.27 TCGA-D8-A27G-01 19 40222057 40222057 G A CLC Missense_Mutation p.S131F 0.07 tolerated(0.13) benign(0.318) TCGA-D8-A27G-01 19 41096738 41096738 C T SHKBP1 Missense_Mutation p.S624L 0.31 deleterious_low_confidence(0.04) benign(0.001) TCGA-D8-A27G-01 19 42793495 42793495 G A CIC Missense_Mutation p.D433N 0.09 probably_damaging(0.995) TCGA-D8-A27G-01 19 43093885 43093885 C T CEACAM8 Missense_Mutation p.E143K 0.15 tolerated(0.19) benign(0.031) TCGA-D8-A27G-01 19 43519387 43519387 G C PSG11 Nonsense_Mutation p.S282* 0.24 TCGA-D8-A27G-01 19 4422727 4422727 G C CHAF1A Missense_Mutation p.E394D 0.32 tolerated(0.13) unknown(0) TCGA-D8-A27G-01 19 44892086 44892086 G A ZNF285 Silent p.L107L 0.33 TCGA-D8-A27G-01 19 45996556 45996556 G T RTN2 Missense_Mutation p.L299M 0.16 tolerated_low_confidence(0.1) benign(0.11) TCGA-D8-A27G-01 19 46195301 46195301 C A SNRPD2 5'UTR 0.45 TCGA-D8-A27G-01 19 46196027 46196027 C G QPCTL Silent p.L22L 0.31 TCGA-D8-A27G-01 19 49574011 49574011 C T KCNA7 Missense_Mutation p.R227H 0.26 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 19 49643254 49643254 G A PPFIA3 Silent p.K759K 0.32 TCGA-D8-A27G-01 19 52090056 52090056 C T ZNF175 Missense_Mutation p.H158Y 0.11 tolerated(0.05) benign(0.064) TCGA-D8-A27G-01 19 52537917 52537917 G A ZNF432 Missense_Mutation p.H339Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 19 52658629 52658629 C T ZNF836 Silent p.R769R 0.22 TCGA-D8-A27G-01 19 532034 532034 G A CDC34 Missense_Mutation p.E35K 0.14 deleterious(0.01) possibly_damaging(0.9) TCGA-D8-A27G-01 19 53770365 53770365 G T VN1R4 Nonsense_Mutation p.S185* 0.14 TCGA-D8-A27G-01 19 53987055 53987055 G T ZNF813 5'UTR 0.10 TCGA-D8-A27G-01 19 54215542 54215542 G C MIR517A RNA 0.18 TCGA-D8-A27G-01 19 54664016 54664016 C T TMC4 3'UTR 0.15 TCGA-D8-A27G-01 19 57665700 57665700 G C DUXA 3'UTR 0.17 TCGA-D8-A27G-01 19 57743477 57743477 C T AURKC Missense_Mutation p.R61W 0.21 deleterious(0.01) possibly_damaging(0.814) TCGA-D8-A27G-01 19 57765876 57765876 G C ZNF805 Silent p.G563G 0.29 TCGA-D8-A27G-01 19 57910114 57910114 C T ZNF548 Silent p.F165F 0.36 TCGA-D8-A27G-01 19 58016693 58016693 G A ZNF773 Missense_Mutation p.E63K 0.08 tolerated(0.6) benign(0.073) TCGA-D8-A27G-01 19 58058554 58058554 C G ZNF550 Missense_Mutation p.R312T 0.10 tolerated(0.48) probably_damaging(0.943) TCGA-D8-A27G-01 19 58152607 58152607 C T ZNF211 Silent p.L316L 0.37 TCGA-D8-A27G-01 19 58899511 58899511 G A RPS5 Missense_Mutation p.E3K 0.13 deleterious(0.02) benign(0.003) TCGA-D8-A27G-01 19 7570273 7570273 C T C19orf45 Silent p.L282L 0.38 TCGA-D8-A27G-01 19 7589965 7589965 G A MCOLN1 Missense_Mutation p.M50I 0.12 deleterious(0) probably_damaging(0.989) TCGA-D8-A27G-01 19 7696568 7696568 C A PCP2 3'UTR 0.29 TCGA-D8-A27G-01 19 7993025 7993025 G A TIMM44 Silent p.I355I 0.20 TCGA-D8-A27G-01 19 9046789 9046789 C G MUC16 Silent p.T11614T 0.28 TCGA-D8-A27G-01 19 9063096 9063096 G A MUC16 Missense_Mutation p.S8117F 0.19 unknown(0) TCGA-D8-A27G-01 19 9068489 9068489 G A MUC16 Silent p.V6319V 0.27 TCGA-D8-A27G-01 19 9452833 9452833 G C ZNF559 Missense_Mutation p.D236H 0.14 deleterious(0.02) benign(0.069) TCGA-D8-A27G-01 1 10041198 10041198 C G NMNAT1 Missense_Mutation p.Q137E 0.16 tolerated(0.88) benign(0.006) TCGA-D8-A27G-01 1 109457025 109457025 G A GPSM2 Missense_Mutation p.E420K 0.38 tolerated(0.1) benign(0.309) TCGA-D8-A27G-01 1 111147111 111147111 C G KCNA2 Missense_Mutation p.L98F 0.26 deleterious(0) probably_damaging(0.939) TCGA-D8-A27G-01 1 112318678 112318678 C G KCND3 3'UTR 0.18 TCGA-D8-A27G-01 1 113460161 113460161 C G SLC16A1 Missense_Mutation p.K289N 0.24 deleterious(0) probably_damaging(0.99) TCGA-D8-A27G-01 1 113633950 113633950 C G LRIG2 Missense_Mutation p.H84D 0.08 deleterious(0.02) benign(0.028) TCGA-D8-A27G-01 1 114454081 114454081 G A DCLRE1B Silent p.L289L 0.12 TCGA-D8-A27G-01 1 115282499 115282499 G C CSDE1 Missense_Mutation p.P51A 0.20 tolerated(0.08) benign(0.027) TCGA-D8-A27G-01 1 11898657 11898657 C G CLCN6 Silent p.V823V 0.26 TCGA-D8-A27G-01 1 120539920 120539920 G A NOTCH2 Missense_Mutation p.H151Y 0.35 deleterious(0) benign(0.101) TCGA-D8-A27G-01 1 12381932 12381932 C G VPS13D Missense_Mutation p.Q2539E 0.27 benign(0.042) TCGA-D8-A27G-01 1 13001260 13001260 C T PRAMEF6 Missense_Mutation p.M141I 0.18 tolerated(0.46) benign(0.017) TCGA-D8-A27G-01 1 145282192 145282192 C G NOTCH2NL 3'UTR 0.15 TCGA-D8-A27G-01 1 149898614 149898614 G A SF3B4 Silent p.F120F 0.24 TCGA-D8-A27G-01 1 151210675 151210675 C T PIP5K1A Missense_Mutation p.A388V 0.27 deleterious(0.01) possibly_damaging(0.728) TCGA-D8-A27G-01 1 151266585 151266585 G T PI4KB Missense_Mutation p.F738L 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-D8-A27G-01 1 152084986 152084986 C T TCHH Missense_Mutation p.R236K 0.22 unknown(0) TCGA-D8-A27G-01 1 152275139 152275139 C G FLG 3'UTR 0.19 TCGA-D8-A27G-01 1 154002391 154002391 G C NUP210L Missense_Mutation p.S1279C 0.18 deleterious(0) probably_damaging(0.987) TCGA-D8-A27G-01 1 154166178 154166178 C T TPM3 5'Flank 0.23 TCGA-D8-A27G-01 1 154947359 154947359 G C CKS1B Intron 0.25 TCGA-D8-A27G-01 1 154987144 154987144 G A ZBTB7B Missense_Mutation p.S37N 0.20 tolerated(0.53) possibly_damaging(0.682) TCGA-D8-A27G-01 1 155686854 155686854 C T DAP3 Missense_Mutation p.H35Y 0.18 deleterious(0.04) benign(0.141) TCGA-D8-A27G-01 1 156180300 156180300 C G SLC25A44 3'UTR 0.35 TCGA-D8-A27G-01 1 156521568 156521568 C G IQGAP3 Missense_Mutation p.D555H 0.14 tolerated(0.16) benign(0.322) TCGA-D8-A27G-01 1 156555599 156555599 C T TTC24 Silent p.L517L 0.24 TCGA-D8-A27G-01 1 157509116 157509116 C T FCRL5 Missense_Mutation p.E388K 0.26 tolerated(0.92) benign(0.058) TCGA-D8-A27G-01 1 157737109 157737109 C G FCRL2 Missense_Mutation p.L358F 0.25 deleterious(0) probably_damaging(0.996) TCGA-D8-A27G-01 1 1586887 1586887 C T CDK11B Missense_Mutation p.D55N 0.24 probably_damaging(0.95) TCGA-D8-A27G-01 1 15888676 15888676 G C DNAJC16 Missense_Mutation p.L398F 0.23 tolerated(1) benign(0) TCGA-D8-A27G-01 1 15890499 15890499 G C DNAJC16 Missense_Mutation p.E472Q 0.16 tolerated(0.06) benign(0.028) TCGA-D8-A27G-01 1 159159608 159159608 G A CADM3 Missense_Mutation p.D46N 0.14 deleterious_low_confidence(0.05) benign(0.005) TCGA-D8-A27G-01 1 159804941 159804941 G A C1orf204 3'UTR 0.09 TCGA-D8-A27G-01 1 159921619 159921619 G A SLAMF9 Silent p.F234F 0.09 TCGA-D8-A27G-01 1 160651050 160651050 G A CD48 Silent p.V198V 0.09 TCGA-D8-A27G-01 1 161093941 161093941 C G NIT1 3'Flank 0.09 TCGA-D8-A27G-01 1 161132413 161132413 G C USP21 Missense_Mutation p.D264H 0.19 deleterious(0) probably_damaging(0.979) TCGA-D8-A27G-01 1 161642868 161642868 C G FCGR2B Missense_Mutation p.F165L 0.15 tolerated(0.05) possibly_damaging(0.474) TCGA-D8-A27G-01 1 16270685 16270685 G A ZBTB17 Intron 0.40 TCGA-D8-A27G-01 1 16274922 16274922 G C ZBTB17 Silent p.L23L 0.29 TCGA-D8-A27G-01 1 16356470 16356470 C T CLCNKA Silent p.I436I 0.26 TCGA-D8-A27G-01 1 1635704 1635704 G T CDK11A Silent p.L548L 0.38 TCGA-D8-A27G-01 1 1647826 1647826 C T CDK11A Silent p.Q149Q 0.19 TCGA-D8-A27G-01 1 166962039 166962039 G C MAEL Missense_Mutation p.E148Q 0.15 deleterious(0.03) benign(0.092) TCGA-D8-A27G-01 1 16778398 16778398 G A NECAP2 Silent p.L185L 0.17 TCGA-D8-A27G-01 1 168073859 168073859 G A GPR161 Missense_Mutation p.S97F 0.16 deleterious(0) probably_damaging(0.967) TCGA-D8-A27G-01 1 168267010 168267010 G A TBX19 Missense_Mutation p.D218N 0.12 deleterious(0) possibly_damaging(0.8) TCGA-D8-A27G-01 1 169828266 169828266 C G SCYL3 Missense_Mutation p.E410Q 0.25 tolerated(0.3) benign(0.083) TCGA-D8-A27G-01 1 17084448 17084448 G A MST1L RNA 0.06 TCGA-D8-A27G-01 1 170994466 170994466 C T MROH9 Missense_Mutation p.S729F 0.15 deleterious(0.04) benign(0.168) TCGA-D8-A27G-01 1 173504976 173504976 G T SLC9C2 Missense_Mutation p.P590T 0.12 tolerated(0.45) benign(0.079) TCGA-D8-A27G-01 1 173806108 173806108 G A DARS2 Missense_Mutation p.E232K 0.22 tolerated(0.39) benign(0.065) TCGA-D8-A27G-01 1 175129826 175129826 G T KIAA0040 3'UTR 0.25 TCGA-D8-A27G-01 1 176811650 176811650 C T PAPPA2 3'UTR 0.23 TCGA-D8-A27G-01 1 179354475 179354475 G C AXDND1 Missense_Mutation p.E282Q 0.19 tolerated(0.29) probably_damaging(0.913) TCGA-D8-A27G-01 1 179983440 179983440 C G CEP350 Missense_Mutation p.Q618E 0.26 probably_damaging(0.995) TCGA-D8-A27G-01 1 179989696 179989696 G C CEP350 Missense_Mutation p.Q929H 0.17 benign(0.001) TCGA-D8-A27G-01 1 181721316 181721316 C G CACNA1E Missense_Mutation p.L1257V 0.22 deleterious(0) probably_damaging(0.92) TCGA-D8-A27G-01 1 183230435 183230435 C T NMNAT2 Missense_Mutation p.E219K 0.08 tolerated(0.53) benign(0.068) TCGA-D8-A27G-01 1 185931695 185931695 G A HMCN1 Missense_Mutation p.G625E 0.05 possibly_damaging(0.649) TCGA-D8-A27G-01 1 186120829 186120829 C T HMCN1 Silent p.L4950L 0.13 TCGA-D8-A27G-01 1 19595190 19595190 C T AKR7L Nonsense_Mutation p.W59* 0.19 TCGA-D8-A27G-01 1 198492671 198492671 G C ATP6V1G3 Silent p.L69L 0.23 TCGA-D8-A27G-01 1 202698837 202698837 C A KDM5B Nonsense_Mutation p.E1499* 0.24 TCGA-D8-A27G-01 1 203134784 203134784 G C ADORA1 Missense_Mutation p.S246T 0.23 tolerated(0.18) benign(0.032) TCGA-D8-A27G-01 1 205693108 205693108 C T NUCKS1 Missense_Mutation p.E59K 0.15 tolerated(0.08) possibly_damaging(0.801) TCGA-D8-A27G-01 1 205813966 205813966 G C PM20D1 Missense_Mutation p.F183L 0.15 tolerated(0.12) benign(0.313) TCGA-D8-A27G-01 1 207112715 207112715 G A PIGR Missense_Mutation p.S46F 0.16 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 1 207134028 207134028 G A FCAMR Missense_Mutation p.S398F 0.21 deleterious(0) probably_damaging(0.997) TCGA-D8-A27G-01 1 208391140 208391140 G C PLXNA2 Missense_Mutation p.S43C 0.17 tolerated(0.09) benign(0.106) TCGA-D8-A27G-01 1 210001507 210001507 C T DIEXF Silent p.F33F 0.30 TCGA-D8-A27G-01 1 210187039 210187039 C T SYT14 Silent p.L86L 0.17 TCGA-D8-A27G-01 1 21076289 21076289 C T HP1BP3 Silent p.P356P 0.17 TCGA-D8-A27G-01 1 211192458 211192458 G C KCNH1 Missense_Mutation p.I233M 0.17 deleterious(0) probably_damaging(0.995) TCGA-D8-A27G-01 1 211526623 211526623 C T TRAF5 Silent p.F14F 0.12 TCGA-D8-A27G-01 1 211526667 211526667 C G TRAF5 Missense_Mutation p.P29R 0.08 deleterious(0.01) probably_damaging(1) TCGA-D8-A27G-01 1 212788425 212788425 C G ATF3 Missense_Mutation p.P21R 0.26 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 1 212799107 212799107 G C FAM71A Missense_Mutation p.L296F 0.35 tolerated(0.16) possibly_damaging(0.708) TCGA-D8-A27G-01 1 212799384 212799384 G T FAM71A Missense_Mutation p.A389S 0.17 tolerated(0.9) benign(0.006) TCGA-D8-A27G-01 1 215792602 215792602 C T KCTD3 Nonsense_Mutation p.Q619* 0.19 TCGA-D8-A27G-01 1 220170425 220170425 G A EPRS Missense_Mutation p.S814F 0.15 deleterious(0.03) benign(0.163) TCGA-D8-A27G-01 1 222705317 222705317 C T HHIPL2 Missense_Mutation p.D572N 0.08 deleterious(0) probably_damaging(0.997) TCGA-D8-A27G-01 1 222750952 222750952 G A TAF1A Missense_Mutation p.H147Y 0.12 tolerated(0.1) benign(0.006) TCGA-D8-A27G-01 1 223116391 223116391 C G DISP1 Missense_Mutation p.Q76E 0.16 tolerated_low_confidence(0.12) benign(0.04) TCGA-D8-A27G-01 1 224548252 224548252 C T CNIH4 Missense_Mutation p.S42L 0.21 deleterious(0.02) possibly_damaging(0.801) TCGA-D8-A27G-01 1 225155281 225155281 C G DNAH14 Nonsense_Mutation p.S216* 0.10 TCGA-D8-A27G-01 1 226076622 226076622 C G LEFTY1 Missense_Mutation p.E49Q 0.19 tolerated(0.22) possibly_damaging(0.761) TCGA-D8-A27G-01 1 227152807 227152807 C T ADCK3 Missense_Mutation p.S95L 0.11 tolerated_low_confidence(0.18) benign(0.001) TCGA-D8-A27G-01 1 227307612 227307612 C T CDC42BPA Missense_Mutation p.E514K 0.22 tolerated(0.12) benign(0.007) TCGA-D8-A27G-01 1 227921836 227921836 C T SNAP47 5'Flank 0.19 TCGA-D8-A27G-01 1 228646044 228646044 G A HIST3H2BB Missense_Mutation p.E72K 0.18 deleterious_low_confidence(0.03) benign(0.022) TCGA-D8-A27G-01 1 22915763 22915763 C G EPHA8 Intron 0.25 TCGA-D8-A27G-01 1 22965582 22965582 G A C1QA Silent p.Q140Q 0.25 TCGA-D8-A27G-01 1 230979431 230979431 C T C1orf198 Missense_Mutation p.R199Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-D8-A27G-01 1 231376866 231376866 C T C1orf131 Missense_Mutation p.D8N 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D8-A27G-01 1 233136146 233136146 C A PCNXL2 Nonsense_Mutation p.E1745* 0.15 TCGA-D8-A27G-01 1 235969147 235969147 C T LYST Missense_Mutation p.E1097K 0.22 deleterious(0.04) probably_damaging(0.987) TCGA-D8-A27G-01 1 237586541 237586541 C T RYR2 Missense_Mutation p.S333F 0.16 probably_damaging(0.959) TCGA-D8-A27G-01 1 237972300 237972300 G A RYR2 Missense_Mutation p.D4800N 0.26 benign(0.108) TCGA-D8-A27G-01 1 237994830 237994830 C G RYR2 Missense_Mutation p.L4925V 0.18 possibly_damaging(0.636) TCGA-D8-A27G-01 1 244586160 244586160 C G ADSS Missense_Mutation p.E214Q 0.20 deleterious(0.01) possibly_damaging(0.476) TCGA-D8-A27G-01 1 245019359 245019359 C G HNRNPU Missense_Mutation p.E672Q 0.23 deleterious(0) unknown(0) TCGA-D8-A27G-01 1 245020994 245020994 C T HNRNPU Missense_Mutation p.G507E 0.20 deleterious(0) unknown(0) TCGA-D8-A27G-01 1 246498692 246498692 G C SMYD3 Missense_Mutation p.L105V 0.09 tolerated(1) benign(0.062) TCGA-D8-A27G-01 1 247014723 247014723 C T AHCTF1 Missense_Mutation p.E1538K 0.09 tolerated(0.26) possibly_damaging(0.487) TCGA-D8-A27G-01 1 247320233 247320233 C G ZNF124 Missense_Mutation p.E169Q 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A27G-01 1 247589051 247589051 C T NLRP3 Intron 0.29 TCGA-D8-A27G-01 1 247597529 247597529 C T NLRP3 Silent p.L818L 0.25 TCGA-D8-A27G-01 1 248058939 248058939 C T OR2W3 Silent p.F17F 0.25 TCGA-D8-A27G-01 1 27436083 27436083 G A SLC9A1 Silent p.F333F 0.23 TCGA-D8-A27G-01 1 27739104 27739104 G C WASF2 Missense_Mutation p.F262L 0.22 tolerated(0.25) unknown(0) TCGA-D8-A27G-01 1 28240985 28240985 G C RPA2 5'UTR 0.28 TCGA-D8-A27G-01 1 32681988 32681988 C T TMEM234 3'UTR 0.31 TCGA-D8-A27G-01 1 34291356 34291356 C T CSMD2 Silent p.L311L 0.24 TCGA-D8-A27G-01 1 35836131 35836131 C T ZMYM4 Nonsense_Mutation p.Q362* 0.16 TCGA-D8-A27G-01 1 36181601 36181601 G A C1orf216 Silent p.L108L 0.38 TCGA-D8-A27G-01 1 36202617 36202617 G C CLSPN Silent p.L1269L 0.17 TCGA-D8-A27G-01 1 36932074 36932074 T A CSF3R Missense_Mutation p.T826S 0.29 tolerated(0.67) benign(0.006) TCGA-D8-A27G-01 1 38323301 38323301 G A MTF1 Silent p.I10I 0.08 TCGA-D8-A27G-01 1 39853963 39853963 G A MACF1 Missense_Mutation p.R3088K 0.13 probably_damaging(0.997) TCGA-D8-A27G-01 1 39950348 39950348 G T MACF1 Missense_Mutation p.D5328Y 0.30 probably_damaging(0.993) TCGA-D8-A27G-01 1 41579178 41579178 G A SCMH1 Silent p.H164H 0.20 TCGA-D8-A27G-01 1 43047095 43047095 C G CCDC30 Nonsense_Mutation p.S377* 0.06 TCGA-D8-A27G-01 1 43308919 43308919 C G ERMAP 3'UTR 0.17 TCGA-D8-A27G-01 1 43647208 43647208 C G WDR65 Nonsense_Mutation p.S54* 0.14 TCGA-D8-A27G-01 1 44134883 44134883 G C KDM4A Missense_Mutation p.E426Q 0.29 tolerated(0.18) benign(0.043) TCGA-D8-A27G-01 1 44437827 44437827 C T DPH2 Intron 0.32 TCGA-D8-A27G-01 1 45474006 45474006 G C HECTD3 Intron 0.24 TCGA-D8-A27G-01 1 46195372 46195372 G C IPP Missense_Mutation p.S265C 0.12 deleterious(0.02) benign(0.376) TCGA-D8-A27G-01 1 49711501 49711501 G A AGBL4 Silent p.T106T 0.23 TCGA-D8-A27G-01 1 50956274 50956274 C G FAF1 Missense_Mutation p.E547Q 0.34 tolerated(0.14) possibly_damaging(0.505) TCGA-D8-A27G-01 1 52399020 52399020 C T RAB3B Missense_Mutation p.E148K 0.13 deleterious(0.02) benign(0.316) TCGA-D8-A27G-01 1 59922675 59922675 G C FGGY Missense_Mutation p.E199D 0.35 tolerated(0.39) benign(0.003) TCGA-D8-A27G-01 1 62734158 62734158 C T KANK4 Missense_Mutation p.E678K 0.30 deleterious(0) possibly_damaging(0.636) TCGA-D8-A27G-01 1 62959997 62959997 C T DOCK7 Silent p.L1691L 0.32 TCGA-D8-A27G-01 1 62961313 62961313 C G DOCK7 Missense_Mutation p.D1624H 0.25 deleterious(0) probably_damaging(0.997) TCGA-D8-A27G-01 1 62961323 62961323 C T DOCK7 Missense_Mutation p.M1620I 0.24 deleterious(0.02) possibly_damaging(0.823) TCGA-D8-A27G-01 1 67411967 67411967 G A MIER1 Missense_Mutation p.D110N 0.36 tolerated(0.09) benign(0.033) TCGA-D8-A27G-01 1 68603524 68603524 G C WLS Silent p.V483V 0.14 TCGA-D8-A27G-01 1 68624928 68624928 C G WLS Missense_Mutation p.E126Q 0.19 tolerated(0.3) benign(0.322) TCGA-D8-A27G-01 1 77987621 77987621 G C AK5 Missense_Mutation p.G474A 0.14 tolerated(0.07) benign(0.007) TCGA-D8-A27G-01 1 84991642 84991642 G C SPATA1 RNA 0.13 TCGA-D8-A27G-01 1 91981408 91981408 G C CDC7 Missense_Mutation p.L385F 0.29 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 20 10621580 10621580 G A JAG1 Missense_Mutation p.S1017F 0.26 deleterious(0) benign(0.369) TCGA-D8-A27G-01 20 14306370 14306370 G T FLRT3 Missense_Mutation p.Q595K 0.20 deleterious(0.01) possibly_damaging(0.69) TCGA-D8-A27G-01 20 17539387 17539387 C T BFSP1 5'UTR 0.10 TCGA-D8-A27G-01 20 20031155 20031155 C T CRNKL1 Missense_Mutation p.D216N 0.26 deleterious(0.03) benign(0.325) TCGA-D8-A27G-01 20 21314419 21314419 C T XRN2 Silent p.F337F 0.09 TCGA-D8-A27G-01 20 25448048 25448048 C T NINL Missense_Mutation p.E1134K 0.21 tolerated(0.08) benign(0.054) TCGA-D8-A27G-01 20 2967452 2967452 C T PTPRA Silent p.L162L 0.23 TCGA-D8-A27G-01 20 31644491 31644491 G A BPIFB3 Missense_Mutation p.E90K 0.18 tolerated(0.11) benign(0.069) TCGA-D8-A27G-01 20 33329000 33329000 G C NCOA6 Missense_Mutation p.S1687C 0.30 possibly_damaging(0.642) TCGA-D8-A27G-01 20 34208630 34208630 G A SPAG4 Missense_Mutation p.E368K 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A27G-01 20 34446251 34446251 G C PHF20 Missense_Mutation p.G123A 0.09 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 20 34776379 34776379 C G EPB41L1 Silent p.S328S 0.09 TCGA-D8-A27G-01 20 35467841 35467841 C T SOGA1 Missense_Mutation p.E231K 0.36 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 20 35731097 35731097 G C MROH8 Missense_Mutation p.S1068C 0.18 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-D8-A27G-01 20 35731195 35731195 G T MROH8 Silent p.I1035I 0.12 TCGA-D8-A27G-01 20 36856635 36856635 C T KIAA1755 Missense_Mutation p.D627N 0.19 tolerated(0.2) possibly_damaging(0.701) TCGA-D8-A27G-01 20 36870061 36870061 C G KIAA1755 Missense_Mutation p.E158Q 0.28 tolerated(0.05) benign(0.027) TCGA-D8-A27G-01 20 37378871 37378871 C G ACTR5 Missense_Mutation p.I198M 0.09 deleterious(0) possibly_damaging(0.682) TCGA-D8-A27G-01 20 39744072 39744072 G C TOP1 Missense_Mutation p.R567T 0.21 deleterious(0) probably_damaging(0.974) TCGA-D8-A27G-01 20 39986519 39986519 C A LPIN3 Intron 0.40 TCGA-D8-A27G-01 20 42169646 42169646 G C L3MBTL1 Missense_Mutation p.V801L 0.11 tolerated_low_confidence(1) benign(0) TCGA-D8-A27G-01 20 43243223 43243223 C T PKIG Missense_Mutation p.S9L 0.27 tolerated(0.09) benign(0.032) TCGA-D8-A27G-01 20 46281227 46281227 C T NCOA3 Missense_Mutation p.P1342S 0.11 tolerated(0.34) benign(0.177) TCGA-D8-A27G-01 20 47570306 47570306 G A ARFGEF2 Missense_Mutation p.E273K 0.24 tolerated(0.46) benign(0.002) TCGA-D8-A27G-01 20 50234064 50234064 G A ATP9A Nonsense_Mutation p.Q794* 0.17 TCGA-D8-A27G-01 20 52574003 52574003 C T BCAS1 Missense_Mutation p.E462K 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-D8-A27G-01 20 61572953 61572953 C T GID8 Silent p.I33I 0.33 TCGA-D8-A27G-01 20 61833941 61833941 C T YTHDF1 Missense_Mutation p.E451K 0.26 deleterious(0) probably_damaging(0.994) TCGA-D8-A27G-01 20 62191829 62191829 C T HELZ2 Intron 0.12 TCGA-D8-A27G-01 21 31587860 31587860 G A CLDN8 Silent p.I128I 0.20 TCGA-D8-A27G-01 21 31802938 31802938 G A KRTAP13-4 Silent p.L115L 0.24 TCGA-D8-A27G-01 21 33044346 33044346 C T SCAF4 Missense_Mutation p.R937K 0.12 unknown(0) TCGA-D8-A27G-01 21 34123276 34123276 C T PAXBP1 Missense_Mutation p.D559N 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 21 35122544 35122544 C G ITSN1 Missense_Mutation p.S148C 0.16 deleterious(0.02) unknown(0) TCGA-D8-A27G-01 21 36088711 36088711 C A CLIC6 Missense_Mutation p.F664L 0.28 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 21 40191444 40191444 G A ETS2 Missense_Mutation p.D277N 0.12 tolerated(0.11) benign(0.003) TCGA-D8-A27G-01 21 40570906 40570906 G C BRWD1 Missense_Mutation p.F1812L 0.20 tolerated_low_confidence(0.69) benign(0.001) TCGA-D8-A27G-01 21 43533685 43533685 C T UMODL1 Missense_Mutation p.P831S 0.22 tolerated(0.06) possibly_damaging(0.803) TCGA-D8-A27G-01 21 43716451 43716451 C G ABCG1 Silent p.L662L 0.11 TCGA-D8-A27G-01 21 47407424 47407424 C T COL6A1 Silent p.F250F 0.31 TCGA-D8-A27G-01 22 16287463 16287463 G C POTEH Missense_Mutation p.H141Q 0.17 tolerated_low_confidence(0.1) benign(0.018) TCGA-D8-A27G-01 22 16449769 16449769 C T OR11H1 Missense_Mutation p.M12I 0.17 deleterious(0.02) benign(0.291) TCGA-D8-A27G-01 22 19127420 19127420 C T DGCR14 Missense_Mutation p.R173K 0.23 tolerated(1) benign(0.001) TCGA-D8-A27G-01 22 20385170 20385170 C T AC023490.1 3'Flank 0.29 TCGA-D8-A27G-01 22 21304207 21304207 C G CRKL 3'UTR 0.15 TCGA-D8-A27G-01 22 21922054 21922054 G T UBE2L3 Intron 0.29 TCGA-D8-A27G-01 22 25124145 25124145 T A PIWIL3 Missense_Mutation p.D644V 0.21 deleterious(0) benign(0.284) TCGA-D8-A27G-01 22 25124146 25124146 C G PIWIL3 Missense_Mutation p.D644H 0.20 deleterious(0.02) possibly_damaging(0.498) TCGA-D8-A27G-01 22 25308675 25308675 G A SGSM1 Missense_Mutation p.G1017S 0.11 deleterious(0) possibly_damaging(0.781) TCGA-D8-A27G-01 22 26859979 26859979 C T HPS4 Silent p.V539V 0.25 TCGA-D8-A27G-01 22 27026323 27026323 C T CRYBA4 Missense_Mutation p.P155S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-D8-A27G-01 22 30221653 30221653 G A ASCC2 Silent p.L66L 0.24 TCGA-D8-A27G-01 22 30811828 30811828 G C SEC14L2 Missense_Mutation p.D249H 0.12 deleterious(0) possibly_damaging(0.593) TCGA-D8-A27G-01 22 36054791 36054791 C T APOL6 Silent p.L60L 0.30 TCGA-D8-A27G-01 22 36055369 36055369 C G APOL6 Nonsense_Mutation p.S253* 0.14 TCGA-D8-A27G-01 22 36205855 36205855 G A RBFOX2 Missense_Mutation p.S145L 0.23 benign(0.108) TCGA-D8-A27G-01 22 39069209 39069209 G C CBY1 Missense_Mutation p.D117H 0.24 deleterious(0.01) benign(0.426) TCGA-D8-A27G-01 22 39917510 39917510 C T ATF4 Silent p.F20F 0.09 TCGA-D8-A27G-01 22 39917549 39917549 C G ATF4 Silent p.L33L 0.10 TCGA-D8-A27G-01 22 39918341 39918341 C G ATF4 Missense_Mutation p.P264A 0.15 deleterious(0.04) probably_damaging(0.983) TCGA-D8-A27G-01 22 43289503 43289503 G A PACSIN2 Silent p.L59L 0.31 TCGA-D8-A27G-01 22 44079633 44079633 G A EFCAB6 Silent p.I415I 0.10 TCGA-D8-A27G-01 22 44322826 44322826 C T PNPLA3 Nonsense_Mutation p.Q67* 0.10 TCGA-D8-A27G-01 22 50898965 50898965 G A SBF1 Silent p.L1048L 0.20 TCGA-D8-A27G-01 22 50899061 50899061 G C SBF1 Nonsense_Mutation p.Y1016* 0.27 TCGA-D8-A27G-01 22 50899605 50899605 G A SBF1 Missense_Mutation p.R984C 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 2 100911929 100911929 C G LONRF2 Missense_Mutation p.K521N 0.23 deleterious(0) possibly_damaging(0.863) TCGA-D8-A27G-01 2 101670693 101670693 C A TBC1D8 Nonsense_Mutation p.E155* 0.32 TCGA-D8-A27G-01 2 102472451 102472451 G C MAP4K4 Missense_Mutation p.E416Q 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-D8-A27G-01 2 108618395 108618395 G A SLC5A7 Missense_Mutation p.D214N 0.31 tolerated(0.36) benign(0.013) TCGA-D8-A27G-01 2 113057472 113057472 G A ZC3H6 Missense_Mutation p.E27K 0.21 deleterious(0.03) unknown(0) TCGA-D8-A27G-01 2 11342211 11342211 G C ROCK2 Silent p.L862L 0.10 TCGA-D8-A27G-01 2 125192094 125192094 C T CNTNAP5 Missense_Mutation p.S188L 0.35 tolerated(0.09) benign(0.271) TCGA-D8-A27G-01 2 128261086 128261086 G T IWS1 Nonsense_Mutation p.S429* 0.21 TCGA-D8-A27G-01 2 128939725 128939725 G C UGGT1 Missense_Mutation p.E1369Q 0.22 deleterious(0) probably_damaging(0.973) TCGA-D8-A27G-01 2 128947509 128947509 G A UGGT1 3'UTR 0.29 TCGA-D8-A27G-01 2 131801929 131801929 G T ARHGEF4 Nonsense_Mutation p.E553* 0.28 TCGA-D8-A27G-01 2 135965152 135965152 C T ZRANB3 Missense_Mutation p.R954K 0.25 deleterious(0) probably_damaging(0.997) TCGA-D8-A27G-01 2 149227744 149227744 G T MBD5 Missense_Mutation p.M744I 0.23 tolerated(0.2) benign(0.004) TCGA-D8-A27G-01 2 152409956 152409956 G C NEB Missense_Mutation p.P6563A 0.24 probably_damaging(1) TCGA-D8-A27G-01 2 153533208 153533208 C T PRPF40A Missense_Mutation p.E248K 0.33 tolerated(0.78) benign(0.305) TCGA-D8-A27G-01 2 15534412 15534412 G C NBAS Missense_Mutation p.Q1066E 0.23 tolerated(0.05) benign(0.114) TCGA-D8-A27G-01 2 158412650 158412650 G A ACVR1C Silent p.L167L 0.30 TCGA-D8-A27G-01 2 167129104 167129104 G A SCN9A Silent p.F1041F 0.33 TCGA-D8-A27G-01 2 16734167 16734167 G A FAM49A 3'UTR 0.13 TCGA-D8-A27G-01 2 168102294 168102294 G A XIRP2 Silent p.L1464L 0.29 TCGA-D8-A27G-01 2 169995791 169995791 G C LRP2 Missense_Mutation p.S4453C 0.29 probably_damaging(0.91) TCGA-D8-A27G-01 2 179320772 179320772 C G DFNB59 Nonsense_Mutation p.S148* 0.19 TCGA-D8-A27G-01 2 179558664 179558664 C T TTN Missense_Mutation p.E10500K 0.25 TCGA-D8-A27G-01 2 179612488 179612488 T C TTN Intron 0.30 TCGA-D8-A27G-01 2 179656840 179656840 C T TTN Missense_Mutation p.E541K 0.26 TCGA-D8-A27G-01 2 182543321 182543321 C T NEUROD1 Silent p.K89K 0.12 TCGA-D8-A27G-01 2 191850372 191850372 C G STAT1 Missense_Mutation p.Q412H 0.29 deleterious(0) probably_damaging(0.937) TCGA-D8-A27G-01 2 1926145 1926145 C G MYT1L Missense_Mutation p.E466Q 0.13 tolerated(0.2) possibly_damaging(0.71) TCGA-D8-A27G-01 2 202050561 202050561 C T CASP10 Missense_Mutation p.R21C 0.21 deleterious(0.04) benign(0.377) TCGA-D8-A27G-01 2 204292164 204292164 G C ABI2 3'UTR 0.11 TCGA-D8-A27G-01 2 207945972 207945972 C G KLF7 Missense_Mutation p.D292H 0.25 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 2 210685294 210685294 G C UNC80 Missense_Mutation p.G741A 0.23 benign(0.008) TCGA-D8-A27G-01 2 21238074 21238074 C T APOB Missense_Mutation p.M1189I 0.13 benign(0.002) TCGA-D8-A27G-01 2 212495208 212495208 C G ERBB4 Missense_Mutation p.L686F 0.10 deleterious(0.01) probably_damaging(0.943) TCGA-D8-A27G-01 2 219290337 219290337 G T VIL1 Splice_Site p.X51_splice 0.27 TCGA-D8-A27G-01 2 219296867 219296867 C T VIL1 Silent p.L434L 0.36 TCGA-D8-A27G-01 2 219457418 219457418 C T RQCD1 Missense_Mutation p.S240L 0.22 deleterious(0) probably_damaging(0.982) TCGA-D8-A27G-01 2 220341673 220341673 G A SPEG Missense_Mutation p.G1510E 0.20 probably_damaging(0.999) TCGA-D8-A27G-01 2 223168516 223168516 G A CCDC140 5'UTR 0.36 TCGA-D8-A27G-01 2 227872760 227872760 G T COL4A4 Missense_Mutation p.L1595I 0.23 unknown(0) TCGA-D8-A27G-01 2 229046342 229046342 C T SPHKAP 5'UTR 0.24 TCGA-D8-A27G-01 2 232011053 232011053 G A PSMD1 Missense_Mutation p.E700K 0.25 deleterious(0.02) benign(0.041) TCGA-D8-A27G-01 2 232325401 232325401 C T NCL Missense_Mutation p.E264K 0.35 benign(0.001) TCGA-D8-A27G-01 2 233431864 233431864 G A EIF4E2 Missense_Mutation p.R202Q 0.44 tolerated(0.05) benign(0.075) TCGA-D8-A27G-01 2 233721513 233721513 C G GIGYF2 Silent p.V1302V 0.06 TCGA-D8-A27G-01 2 234171846 234171846 G C ATG16L1 Missense_Mutation p.E94Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 2 234182378 234182378 C T ATG16L1 Missense_Mutation p.S269L 0.29 deleterious(0.04) probably_damaging(0.968) TCGA-D8-A27G-01 2 238939194 238939194 C T UBE2F Intron 0.22 TCGA-D8-A27G-01 2 241556439 241556439 G A GPR35 Intron 0.38 TCGA-D8-A27G-01 2 242179145 242179145 C T HDLBP Missense_Mutation p.E828K 0.08 tolerated(0.09) benign(0.394) TCGA-D8-A27G-01 2 27260482 27260482 G C TMEM214 Missense_Mutation p.G355A 0.16 deleterious(0.05) possibly_damaging(0.698) TCGA-D8-A27G-01 2 27599023 27599023 G A SNX17 Silent p.V385V 0.11 TCGA-D8-A27G-01 2 27917512 27917512 G C SLC4A1AP Missense_Mutation p.D785H 0.25 deleterious(0) probably_damaging(0.914) TCGA-D8-A27G-01 2 29519845 29519845 C G ALK Missense_Mutation p.E576Q 0.22 tolerated(0.15) probably_damaging(0.999) TCGA-D8-A27G-01 2 32461373 32461373 G C NLRC4 Missense_Mutation p.L853V 0.26 deleterious(0.01) benign(0.432) TCGA-D8-A27G-01 2 32475918 32475918 G C NLRC4 Missense_Mutation p.L339V 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-D8-A27G-01 2 33817255 33817255 G T FAM98A Missense_Mutation p.L77I 0.26 tolerated(0.07) possibly_damaging(0.749) TCGA-D8-A27G-01 2 37041381 37041381 C G VIT Silent p.V653V 0.24 TCGA-D8-A27G-01 2 38523843 38523843 C G ATL2 Intron 0.25 TCGA-D8-A27G-01 2 38829676 38829676 C T HNRNPLL Silent p.E26E 0.33 TCGA-D8-A27G-01 2 38829687 38829687 C T HNRNPLL Missense_Mutation p.E23K 0.31 deleterious_low_confidence(0.05) benign(0.115) TCGA-D8-A27G-01 2 43571327 43571327 G A THADA Missense_Mutation p.S1426L 0.09 tolerated(0.08) benign(0.009) TCGA-D8-A27G-01 2 46739730 46739730 C G ATP6V1E2 Missense_Mutation p.E41Q 0.32 deleterious(0.02) probably_damaging(0.973) TCGA-D8-A27G-01 2 47389797 47389797 G C CALM2 Missense_Mutation p.F13L 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.756) TCGA-D8-A27G-01 2 48915041 48915041 C G LHCGR Missense_Mutation p.R632T 0.20 deleterious(0.03) possibly_damaging(0.87) TCGA-D8-A27G-01 2 55191121 55191121 G A EML6 Splice_Site p.X1720_splice 0.22 TCGA-D8-A27G-01 2 55900055 55900055 G A PNPT1 Missense_Mutation p.S280L 0.27 tolerated(0.31) benign(0.001) TCGA-D8-A27G-01 2 61633109 61633109 C T USP34 Missense_Mutation p.D96N 0.27 tolerated(0.39) benign(0.015) TCGA-D8-A27G-01 2 62728269 62728269 C G TMEM17 3'UTR 0.20 TCGA-D8-A27G-01 2 64085017 64085017 G T UGP2 Nonsense_Mutation p.E68* 0.25 TCGA-D8-A27G-01 2 70917942 70917942 C A ADD2 Missense_Mutation p.Q275H 0.22 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 2 71650077 71650077 G C ZNF638 Missense_Mutation p.E1145Q 0.19 tolerated(0.05) possibly_damaging(0.492) TCGA-D8-A27G-01 2 74432940 74432940 G C MTHFD2 Silent p.L70L 0.25 TCGA-D8-A27G-01 2 74483038 74483038 T A SLC4A5 Nonsense_Mutation p.K297* 0.23 TCGA-D8-A27G-01 2 74483039 74483039 C T SLC4A5 Silent p.K296K 0.23 TCGA-D8-A27G-01 2 74699267 74699267 C T MRPL53 Silent p.P106P 0.26 TCGA-D8-A27G-01 2 84745089 84745089 G C DNAH6 Missense_Mutation p.D47H 0.25 deleterious_low_confidence(0.03) benign(0.136) TCGA-D8-A27G-01 2 86358205 86358206 - T PTCD3 Frame_Shift_Ins p.Q417Sfs*35 0.24 TCGA-D8-A27G-01 2 87015674 87015674 C T CD8A Missense_Mutation p.R212K 0.31 tolerated(0.13) benign(0.316) TCGA-D8-A27G-01 2 96548063 96548063 C G ANKRD36C Missense_Mutation p.W145C 0.05 deleterious_low_confidence(0.02) benign(0.062) TCGA-D8-A27G-01 2 97025883 97025883 G T NCAPH Missense_Mutation p.D454Y 0.38 deleterious(0.01) possibly_damaging(0.595) TCGA-D8-A27G-01 2 99949675 99949675 C G TXNDC9 5'UTR 0.10 TCGA-D8-A27G-01 3 101039278 101039278 G C IMPG2 5'UTR 0.17 TCGA-D8-A27G-01 3 101039305 101039305 G A IMPG2 5'UTR 0.24 TCGA-D8-A27G-01 3 107492312 107492312 G A BBX Missense_Mutation p.D582N 0.33 tolerated(0.06) benign(0.125) TCGA-D8-A27G-01 3 111342638 111342638 G C CD96 Silent p.V422V 0.13 TCGA-D8-A27G-01 3 112643997 112643997 G T CD200R1 Silent p.I271I 0.15 TCGA-D8-A27G-01 3 113169309 113169309 C T SPICE1 Missense_Mutation p.E733K 0.15 deleterious(0) probably_damaging(0.96) TCGA-D8-A27G-01 3 121421341 121421341 C G GOLGB1 Silent p.L502L 0.10 TCGA-D8-A27G-01 3 122274435 122274435 G C PARP9 Missense_Mutation p.H230D 0.13 tolerated(0.77) benign(0.006) TCGA-D8-A27G-01 3 122274953 122274953 C G PARP9 Missense_Mutation p.G57A 0.31 tolerated(0.72) benign(0.005) TCGA-D8-A27G-01 3 128696921 128696921 C G KIAA1257 Missense_Mutation p.E259Q 0.27 deleterious(0.04) probably_damaging(0.964) TCGA-D8-A27G-01 3 129155812 129155812 G A MBD4 Silent p.F225F 0.26 TCGA-D8-A27G-01 3 129279238 129279238 G A PLXND1 Missense_Mutation p.H1690Y 0.25 tolerated(0.23) possibly_damaging(0.904) TCGA-D8-A27G-01 3 132345562 132345562 C T ACAD11 Missense_Mutation p.M390I 0.23 tolerated(0.11) benign(0.188) TCGA-D8-A27G-01 3 132347189 132347189 G A ACAD11 Silent p.S355S 0.08 TCGA-D8-A27G-01 3 140185532 140185532 G A CLSTN2 Missense_Mutation p.D435N 0.30 deleterious(0.02) benign(0.028) TCGA-D8-A27G-01 3 140997221 140997221 G C ACPL2 Missense_Mutation p.M39I 0.29 tolerated_low_confidence(0.41) benign(0) TCGA-D8-A27G-01 3 141011696 141011696 C T ACPL2 Silent p.T364T 0.16 TCGA-D8-A27G-01 3 148903057 148903057 C T CP Missense_Mutation p.E752K 0.14 deleterious(0.03) probably_damaging(0.956) TCGA-D8-A27G-01 3 15518644 15518644 C T COLQ Missense_Mutation p.E152K 0.23 tolerated(0.56) unknown(0) TCGA-D8-A27G-01 3 155301389 155301389 C G PLCH1 Missense_Mutation p.E203Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-D8-A27G-01 3 157177759 157177759 G A VEPH1 Intron 0.34 TCGA-D8-A27G-01 3 157815879 157815879 C G SHOX2 Missense_Mutation p.K335N 0.23 deleterious(0) unknown(0) TCGA-D8-A27G-01 3 159713202 159713202 C T IL12A Silent p.F206F 0.28 TCGA-D8-A27G-01 3 160942832 160942832 G C NMD3 Silent p.S53S 0.10 TCGA-D8-A27G-01 3 168840406 168840406 C T MECOM Missense_Mutation p.D190N 0.06 tolerated(0.06) possibly_damaging(0.81) TCGA-D8-A27G-01 3 169569447 169569447 G C LRRC31 Missense_Mutation p.I373M 0.31 tolerated(0.07) benign(0.196) TCGA-D8-A27G-01 3 169815093 169815093 G C PHC3 Silent p.L971L 0.13 TCGA-D8-A27G-01 3 170843929 170843929 C T TNIK Silent p.L595L 0.15 TCGA-D8-A27G-01 3 171360647 171360647 C T PLD1 Missense_Mutation p.G859E 0.26 tolerated(0.79) benign(0.019) TCGA-D8-A27G-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.10 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A27G-01 3 178968844 178968844 G A KCNMB3 Silent p.F16F 0.26 TCGA-D8-A27G-01 3 183706385 183706385 C T ABCC5 Missense_Mutation p.E140K 0.21 deleterious(0) possibly_damaging(0.895) TCGA-D8-A27G-01 3 184039808 184039808 G T EIF4G1 Missense_Mutation p.G486V 0.28 tolerated(0.31) benign(0.261) TCGA-D8-A27G-01 3 185823642 185823642 C G ETV5 Missense_Mutation p.D6H 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A27G-01 3 188592299 188592299 G A LPP 3'UTR 0.14 TCGA-D8-A27G-01 3 190126100 190126100 C T CLDN16 Intron 0.28 TCGA-D8-A27G-01 3 190373869 190373869 C G IL1RAP Missense_Mutation p.L513V 0.18 tolerated(0.08) possibly_damaging(0.492) TCGA-D8-A27G-01 3 190967882 190967882 G A OSTN Missense_Mutation p.R125K 0.23 tolerated(1) benign(0.159) TCGA-D8-A27G-01 3 192992930 192992930 G A ATP13A5 Silent p.F1186F 0.19 TCGA-D8-A27G-01 3 193160240 193160240 G A ATP13A4 Missense_Mutation p.S753L 0.31 tolerated(0.06) benign(0.012) TCGA-D8-A27G-01 3 196199186 196199186 C G RNF168 Missense_Mutation p.R407T 0.12 deleterious(0) possibly_damaging(0.821) TCGA-D8-A27G-01 3 196199357 196199357 C G RNF168 Missense_Mutation p.R350T 0.09 tolerated(0.14) benign(0.048) TCGA-D8-A27G-01 3 196210659 196210662 TTTC - RNF168 Frame_Shift_Del p.R220Tfs*9 0.33 TCGA-D8-A27G-01 3 197497048 197497048 C T FYTTD1 Silent p.L144L 0.31 TCGA-D8-A27G-01 3 25770774 25770774 C T NGLY1 Silent p.E487E 0.08 TCGA-D8-A27G-01 3 27204223 27204223 G A NEK10 Silent p.F946F 0.22 TCGA-D8-A27G-01 3 3189869 3189869 C G TRNT1 3'UTR 0.25 TCGA-D8-A27G-01 3 32995515 32995515 C T CCR4 Missense_Mutation p.L201F 0.12 tolerated(1) benign(0.137) TCGA-D8-A27G-01 3 33451004 33451004 C G UBP1 Missense_Mutation p.Q215H 0.33 tolerated(0.45) possibly_damaging(0.863) TCGA-D8-A27G-01 3 33539968 33539968 C T CLASP2 3'UTR 0.26 TCGA-D8-A27G-01 3 36534670 36534670 G A STAC Missense_Mutation p.E239K 0.20 tolerated(0.05) probably_damaging(0.998) TCGA-D8-A27G-01 3 37388711 37388711 C A GOLGA4 Nonsense_Mutation p.S2182* 0.13 TCGA-D8-A27G-01 3 40498823 40498823 C G RPL14 5'Flank 0.30 TCGA-D8-A27G-01 3 42448786 42448786 G A LYZL4 5'UTR 0.23 TCGA-D8-A27G-01 3 44867541 44867541 G A KIF15 Missense_Mutation p.E854K 0.20 deleterious(0) probably_damaging(0.994) TCGA-D8-A27G-01 3 46026395 46026395 G C FYCO1 Missense_Mutation p.S3C 0.07 deleterious(0.01) possibly_damaging(0.778) TCGA-D8-A27G-01 3 47163682 47163682 G T SETD2 Nonsense_Mutation p.S815* 0.19 TCGA-D8-A27G-01 3 47163993 47163993 G A SETD2 Silent p.V711V 0.33 TCGA-D8-A27G-01 3 47165816 47165816 G A SETD2 Missense_Mutation p.P104S 0.25 tolerated(0.25) benign(0.057) TCGA-D8-A27G-01 3 47451651 47451651 C T PTPN23 Missense_Mutation p.S788L 0.38 unknown(0) TCGA-D8-A27G-01 3 47453831 47453831 G T PTPN23 Nonsense_Mutation p.E1413* 0.27 TCGA-D8-A27G-01 3 47676820 47676820 C T SMARCC1 Missense_Mutation p.E836K 0.19 tolerated(0.21) benign(0.007) TCGA-D8-A27G-01 3 48896537 48896537 G A SLC25A20 Nonsense_Mutation p.R236* 0.32 TCGA-D8-A27G-01 3 49412973 49412973 C G RHOA Missense_Mutation p.G17A 0.23 deleterious(0) possibly_damaging(0.591) TCGA-D8-A27G-01 3 49693239 49693239 G T BSN Nonsense_Mutation p.E2084* 0.20 TCGA-D8-A27G-01 3 49934985 49934985 C T MST1R Missense_Mutation p.G672S 0.36 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 3 49940844 49940844 C T MST1R Missense_Mutation p.E67K 0.16 tolerated(0.66) benign(0.158) TCGA-D8-A27G-01 3 49940880 49940880 C G MST1R Missense_Mutation p.V55L 0.22 deleterious(0.02) benign(0.303) TCGA-D8-A27G-01 3 49940888 49940888 C T MST1R Missense_Mutation p.G52E 0.19 tolerated(0.17) possibly_damaging(0.703) TCGA-D8-A27G-01 3 50103765 50103765 C G RBM6 Missense_Mutation p.P925A 0.25 tolerated(0.11) benign(0.002) TCGA-D8-A27G-01 3 51978149 51978149 G C PARP3 Missense_Mutation p.E83D 0.29 tolerated(0.07) benign(0.001) TCGA-D8-A27G-01 3 51978890 51978890 G A PARP3 Missense_Mutation p.E207K 0.33 deleterious(0.01) benign(0.016) TCGA-D8-A27G-01 3 52745823 52745823 C G NEK4 Missense_Mutation p.L832F 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 3 57335860 57335860 C T DNAH12 Missense_Mutation p.G485E 0.27 deleterious(0) probably_damaging(0.976) TCGA-D8-A27G-01 3 64009039 64009039 G C PSMD6 Missense_Mutation p.I19M 0.21 deleterious(0.01) benign(0.368) TCGA-D8-A27G-01 3 67053917 67053917 C T KBTBD8 Missense_Mutation p.R176C 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-D8-A27G-01 3 7621005 7621005 C T GRM7 Silent p.F804F 0.11 TCGA-D8-A27G-01 3 97596117 97596117 C A CRYBG3 Missense_Mutation p.H79N 0.20 tolerated_low_confidence(0.08) benign(0) TCGA-D8-A27G-01 3 99513932 99513932 G T COL8A1 Missense_Mutation p.G396V 0.35 deleterious(0) unknown(0) TCGA-D8-A27G-01 4 100521726 100521726 C T MTTP Nonsense_Mutation p.Q358* 0.21 TCGA-D8-A27G-01 4 103949982 103949982 C T SLC9B2 Silent p.L438L 0.17 TCGA-D8-A27G-01 4 104066736 104066736 C G CENPE Missense_Mutation p.E1506Q 0.15 probably_damaging(0.998) TCGA-D8-A27G-01 4 104067141 104067141 C G CENPE Missense_Mutation p.E1420Q 0.15 possibly_damaging(0.447) TCGA-D8-A27G-01 4 104579457 104579457 G A TACR3 Nonsense_Mutation p.Q218* 0.17 TCGA-D8-A27G-01 4 106156375 106156375 C G TET2 Missense_Mutation p.L426V 0.23 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-D8-A27G-01 4 106190766 106190766 G C TET2 Splice_Site p.X1349_splice 0.33 TCGA-D8-A27G-01 4 106604111 106604111 G A INTS12 Missense_Mutation p.P390S 0.24 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-D8-A27G-01 4 110603795 110603795 G A CCDC109B Missense_Mutation p.R170K 0.29 tolerated(0.12) benign(0.038) TCGA-D8-A27G-01 4 114253195 114253195 C T ANK2 Nonsense_Mutation p.Q1065* 0.10 TCGA-D8-A27G-01 4 119609136 119609136 G A METTL14 Missense_Mutation p.R42K 0.20 tolerated_low_confidence(0.75) benign(0.002) TCGA-D8-A27G-01 4 119609147 119609147 G A METTL14 Missense_Mutation p.E46K 0.18 tolerated_low_confidence(0.15) probably_damaging(0.971) TCGA-D8-A27G-01 4 119951999 119951999 G A SYNPO2 Missense_Mutation p.R690K 0.20 tolerated(0.2) probably_damaging(0.91) TCGA-D8-A27G-01 4 123132205 123132205 G C KIAA1109 Missense_Mutation p.Q734H 0.34 benign(0.008) TCGA-D8-A27G-01 4 123664136 123664136 C T BBS12 Silent p.L363L 0.31 TCGA-D8-A27G-01 4 128842696 128842696 G C MFSD8 Missense_Mutation p.L445V 0.21 deleterious(0.02) possibly_damaging(0.849) TCGA-D8-A27G-01 4 138449959 138449959 G C PCDH18 Missense_Mutation p.L835V 0.06 tolerated(0.12) possibly_damaging(0.472) TCGA-D8-A27G-01 4 146435960 146435960 C T SMAD1 Silent p.V65V 0.09 TCGA-D8-A27G-01 4 151511904 151511904 G A LRBA Silent p.L2063L 0.15 TCGA-D8-A27G-01 4 15690057 15690057 G C FAM200B Missense_Mutation p.R486T 0.16 tolerated(0.82) benign(0.005) TCGA-D8-A27G-01 4 15720590 15720590 C G BST1 Missense_Mutation p.F255L 0.16 tolerated(0.08) possibly_damaging(0.796) TCGA-D8-A27G-01 4 157999256 157999256 C T GLRB Missense_Mutation p.S27L 0.25 deleterious_low_confidence(0.01) benign(0.027) TCGA-D8-A27G-01 4 169172173 169172173 G A DDX60 Missense_Mutation p.H1264Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 4 169232504 169232504 G A DDX60 5'UTR 0.19 TCGA-D8-A27G-01 4 169305835 169305835 G A DDX60L Silent p.L1348L 0.29 TCGA-D8-A27G-01 4 174242987 174242987 C T GALNT7 3'UTR 0.25 TCGA-D8-A27G-01 4 184930337 184930337 C T STOX2 Silent p.L116L 0.40 TCGA-D8-A27G-01 4 186380336 186380336 G A CCDC110 Missense_Mutation p.L469F 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-D8-A27G-01 4 187208887 187208887 C T F11 Silent p.N542N 0.08 TCGA-D8-A27G-01 4 20852249 20852249 G A KCNIP4 Missense_Mutation p.R69W 0.27 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 4 25258265 25258265 G A PI4K2B Missense_Mutation p.R242K 0.23 tolerated(0.25) benign(0.05) TCGA-D8-A27G-01 4 25806285 25806285 G A SEL1L3 Missense_Mutation p.H552Y 0.22 tolerated(0.11) benign(0.004) TCGA-D8-A27G-01 4 2717776 2717776 G A FAM193A Missense_Mutation p.D1217N 0.09 deleterious(0.02) probably_damaging(0.991) TCGA-D8-A27G-01 4 2717806 2717806 G C FAM193A Missense_Mutation p.E1227Q 0.08 deleterious(0) probably_damaging(0.986) TCGA-D8-A27G-01 4 3037241 3037241 C T GRK4 Silent p.F466F 0.13 TCGA-D8-A27G-01 4 3190748 3190748 G A HTT Missense_Mutation p.E1766K 0.31 possibly_damaging(0.692) TCGA-D8-A27G-01 4 36069753 36069753 G A ARAP2 Missense_Mutation p.R1631W 0.30 deleterious(0.03) benign(0.004) TCGA-D8-A27G-01 4 37846059 37846059 C A PGM2 Nonsense_Mutation p.S265* 0.10 TCGA-D8-A27G-01 4 39915337 39915337 C T PDS5A Missense_Mutation p.G296R 0.32 tolerated(0.11) possibly_damaging(0.549) TCGA-D8-A27G-01 4 40440028 40440028 C T RBM47 Missense_Mutation p.V295M 0.38 tolerated(0.05) possibly_damaging(0.644) TCGA-D8-A27G-01 4 438174 438174 C T ZNF721 Missense_Mutation p.E28K 0.23 tolerated(0.7) benign(0.021) TCGA-D8-A27G-01 4 48069484 48069484 G A TXK 3'UTR 0.54 TCGA-D8-A27G-01 4 524392 524392 G A PIGG Missense_Mutation p.R810K 0.16 tolerated(0.08) probably_damaging(0.997) TCGA-D8-A27G-01 4 55141020 55141020 G A PDGFRA Missense_Mutation p.E556K 0.16 deleterious(0) probably_damaging(0.996) TCGA-D8-A27G-01 4 56475337 56475337 C T NMU Missense_Mutation p.A77T 0.21 tolerated(0.39) benign(0.097) TCGA-D8-A27G-01 4 6864958 6864958 C T KIAA0232 Missense_Mutation p.P950L 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A27G-01 4 71098739 71098739 G C FDCSP Missense_Mutation p.R29T 0.12 deleterious_low_confidence(0) benign(0.402) TCGA-D8-A27G-01 4 71465264 71465264 C A AMBN Nonsense_Mutation p.Y65* 0.25 TCGA-D8-A27G-01 4 71509721 71509721 C G ENAM Missense_Mutation p.Q860E 0.27 deleterious(0.03) possibly_damaging(0.755) TCGA-D8-A27G-01 4 74014745 74014745 C G ANKRD17 Missense_Mutation p.R451T 0.24 probably_damaging(0.999) TCGA-D8-A27G-01 4 76439444 76439444 C T RCHY1 Missense_Mutation p.R18Q 0.41 tolerated(0.24) benign(0.008) TCGA-D8-A27G-01 4 79410060 79410060 C G FRAS1 Silent p.L2928L 0.22 TCGA-D8-A27G-01 4 81123181 81123181 C T PRDM8 Missense_Mutation p.P189S 0.17 tolerated_low_confidence(0.13) benign(0.004) TCGA-D8-A27G-01 4 85540666 85540666 C T CDS1 Missense_Mutation p.S187L 0.09 deleterious(0) probably_damaging(0.981) TCGA-D8-A27G-01 4 88085091 88085091 C T KLHL8 Missense_Mutation p.G560S 0.31 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 4 88106843 88106843 C G KLHL8 Missense_Mutation p.E109Q 0.21 tolerated(0.32) possibly_damaging(0.502) TCGA-D8-A27G-01 4 88723881 88723881 C T IBSP Nonsense_Mutation p.Q61* 0.19 TCGA-D8-A27G-01 4 89668139 89668139 C G FAM13A Missense_Mutation p.E804Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 4 90169599 90169599 C T GPRIN3 Missense_Mutation p.D555N 0.07 tolerated(0.49) benign(0.002) TCGA-D8-A27G-01 4 90169740 90169740 C T GPRIN3 Missense_Mutation p.D508N 0.06 tolerated(0.16) benign(0.004) TCGA-D8-A27G-01 5 108168544 108168544 C G FER Missense_Mutation p.S94C 0.29 deleterious(0.01) possibly_damaging(0.8) TCGA-D8-A27G-01 5 112128144 112128144 G A APC Missense_Mutation p.R216Q 0.17 benign(0.001) TCGA-D8-A27G-01 5 112175084 112175084 G C APC Missense_Mutation p.E1265Q 0.34 probably_damaging(0.999) TCGA-D8-A27G-01 5 112175457 112175457 C T APC Missense_Mutation p.S1389F 0.26 probably_damaging(1) TCGA-D8-A27G-01 5 112769588 112769588 C G TSSK1B Missense_Mutation p.E317Q 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.675) TCGA-D8-A27G-01 5 120022150 120022150 G A PRR16 Missense_Mutation p.D198N 0.26 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-D8-A27G-01 5 121412813 121412813 G C LOX Intron 0.44 TCGA-D8-A27G-01 5 126383590 126383590 C T C5orf63 Silent p.Q63Q 0.28 TCGA-D8-A27G-01 5 126732358 126732358 G A MEGF10 Missense_Mutation p.E183K 0.20 tolerated(0.44) benign(0.012) TCGA-D8-A27G-01 5 127520176 127520176 G C SLC12A2 Missense_Mutation p.E1140Q 0.08 tolerated(0.07) probably_damaging(0.96) TCGA-D8-A27G-01 5 127712538 127712538 C T FBN2 Missense_Mutation p.E620K 0.30 deleterious(0.02) possibly_damaging(0.622) TCGA-D8-A27G-01 5 137290027 137290027 C T FAM13B Missense_Mutation p.E494K 0.33 deleterious(0.02) benign(0.201) TCGA-D8-A27G-01 5 139221911 139221911 C G PSD2 Nonsense_Mutation p.S723* 0.20 TCGA-D8-A27G-01 5 139864797 139864797 C G ANKHD1 Silent p.L654L 0.33 TCGA-D8-A27G-01 5 140181299 140181299 G A PCDHA3 Missense_Mutation p.D173N 0.35 tolerated_low_confidence(0.12) benign(0.007) TCGA-D8-A27G-01 5 140390465 140390465 G C PCDHAC1 3'UTR 0.26 TCGA-D8-A27G-01 5 140480072 140480072 C T PCDHB3 5'Flank 0.24 TCGA-D8-A27G-01 5 140719182 140719182 C A PCDHGA2 Missense_Mutation p.S215Y 0.18 tolerated_low_confidence(1) benign(0.154) TCGA-D8-A27G-01 5 140772611 140772611 G A PCDHGA8 Silent p.L77L 0.30 TCGA-D8-A27G-01 5 14465790 14465790 C G TRIO Intron 0.14 TCGA-D8-A27G-01 5 14480117 14480117 G A TRIO Silent p.L2111L 0.24 TCGA-D8-A27G-01 5 149276340 149276340 C T PDE6A Splice_Site p.X470_splice 0.31 TCGA-D8-A27G-01 5 149676953 149676953 G A ARSI Missense_Mutation p.H512Y 0.18 deleterious(0.05) benign(0.285) TCGA-D8-A27G-01 5 151179904 151179904 C T G3BP1 Nonsense_Mutation p.Q361* 0.16 TCGA-D8-A27G-01 5 167995968 167995968 G A PANK3 Silent p.L22L 0.17 TCGA-D8-A27G-01 5 175795857 175795857 G A ARL10 Missense_Mutation p.E145K 0.27 tolerated(0.64) possibly_damaging(0.876) TCGA-D8-A27G-01 5 176882225 176882225 G T PRR7 Missense_Mutation p.A53S 0.27 tolerated(0.05) unknown(0) TCGA-D8-A27G-01 5 177022334 177022334 C T TMED9 Silent p.L209L 0.32 TCGA-D8-A27G-01 5 179663311 179663311 C G MAPK9 3'UTR 0.33 TCGA-D8-A27G-01 5 31401594 31401594 C A DROSHA Missense_Mutation p.W1357L 0.26 tolerated_low_confidence(0.7) benign(0.002) TCGA-D8-A27G-01 5 32048704 32048704 G A PDZD2 Missense_Mutation p.D527N 0.14 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 5 38418272 38418272 C A EGFLAM Silent p.G533G 0.30 TCGA-D8-A27G-01 5 40981496 40981496 G A C7 Missense_Mutation p.E785K 0.17 tolerated(0.07) benign(0.003) TCGA-D8-A27G-01 5 41065478 41065478 C T MROH2B Missense_Mutation p.D106N 0.09 tolerated(0.94) benign(0.001) TCGA-D8-A27G-01 5 50685717 50685717 G A ISL1 Missense_Mutation p.R239Q 0.17 deleterious(0) possibly_damaging(0.533) TCGA-D8-A27G-01 5 52370939 52370939 C G ITGA2 Missense_Mutation p.Q905E 0.31 tolerated(0.96) benign(0.012) TCGA-D8-A27G-01 5 55082490 55082490 G T DDX4 Missense_Mutation p.G337W 0.32 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 5 60827328 60827328 A G ZSWIM6 Missense_Mutation p.H674R 0.32 deleterious(0.04) benign(0.099) TCGA-D8-A27G-01 5 6449319 6449319 G T UBE2QL1 Missense_Mutation p.A105S 0.40 tolerated(0.89) possibly_damaging(0.725) TCGA-D8-A27G-01 5 65466617 65466617 G A SREK1 Silent p.E442E 0.07 TCGA-D8-A27G-01 5 65466635 65466635 G C SREK1 Missense_Mutation p.E448D 0.07 tolerated_low_confidence(0.42) unknown(0) TCGA-D8-A27G-01 5 68414432 68414432 G A SLC30A5 Missense_Mutation p.E516K 0.28 tolerated(0.26) possibly_damaging(0.719) TCGA-D8-A27G-01 5 68800079 68800079 C G OCLN Missense_Mutation p.S3C 0.32 deleterious(0.01) possibly_damaging(0.606) TCGA-D8-A27G-01 5 73178323 73178323 G C ARHGEF28 Missense_Mutation p.M947I 0.21 deleterious(0.01) possibly_damaging(0.768) TCGA-D8-A27G-01 5 74017042 74017042 C G HEXB 3'UTR 0.16 TCGA-D8-A27G-01 5 74017366 74017366 C G GFM2 3'UTR 0.15 TCGA-D8-A27G-01 5 76649195 76649195 C G PDE8B Silent p.L377L 0.21 TCGA-D8-A27G-01 5 79025052 79025052 C G CMYA5 Missense_Mutation p.S155C 0.19 possibly_damaging(0.869) TCGA-D8-A27G-01 5 79030755 79030755 C T CMYA5 Missense_Mutation p.S2056L 0.50 benign(0.039) TCGA-D8-A27G-01 5 79031127 79031127 C T CMYA5 Missense_Mutation p.S2180L 0.60 probably_damaging(0.953) TCGA-D8-A27G-01 5 80149949 80149949 G T MSH3 Missense_Mutation p.R938S 0.21 deleterious(0) probably_damaging(0.987) TCGA-D8-A27G-01 5 82648999 82648999 G A XRCC4 Missense_Mutation p.E317K 0.10 tolerated(0.24) probably_damaging(0.973) TCGA-D8-A27G-01 5 94803617 94803617 A G TTC37 Missense_Mutation p.Y1525H 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-D8-A27G-01 6 10398657 10398657 C T TFAP2A Missense_Mutation p.R436K 0.16 deleterious(0.02) benign(0.015) TCGA-D8-A27G-01 6 105291170 105291170 C A HACE1 Missense_Mutation p.Q110H 0.17 tolerated(0.1) benign(0.159) TCGA-D8-A27G-01 6 11190945 11190945 G A NEDD9 Missense_Mutation p.S386F 0.23 deleterious(0.02) benign(0.158) TCGA-D8-A27G-01 6 116579988 116579988 G A TSPYL4 5'Flank 0.13 TCGA-D8-A27G-01 6 117046930 117046930 C G KPNA5 Missense_Mutation p.S339C 0.28 deleterious(0.01) probably_damaging(0.924) TCGA-D8-A27G-01 6 126203578 126203578 G A NCOA7 Missense_Mutation p.D194N 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-D8-A27G-01 6 133802655 133802655 G C EYA4 Missense_Mutation p.R342T 0.16 tolerated(0.1) benign(0.197) TCGA-D8-A27G-01 6 138584527 138584527 C T KIAA1244 Missense_Mutation p.S636L 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D8-A27G-01 6 144835051 144835051 C T UTRN Nonsense_Mutation p.Q1651* 0.15 TCGA-D8-A27G-01 6 145118986 145118986 G A UTRN Silent p.V3035V 0.22 TCGA-D8-A27G-01 6 146256180 146256180 C T SHPRH Silent p.K951K 0.11 TCGA-D8-A27G-01 6 146678690 146678690 G A GRM1 Missense_Mutation p.E488K 0.33 tolerated(0.3) benign(0.019) TCGA-D8-A27G-01 6 147022141 147022141 G A ADGB Missense_Mutation p.E548K 0.22 deleterious(0.03) possibly_damaging(0.849) TCGA-D8-A27G-01 6 150263239 150263239 C G ULBP2 Missense_Mutation p.L11V 0.15 tolerated(0.3) benign(0.445) TCGA-D8-A27G-01 6 151670262 151670262 G A AKAP12 Missense_Mutation p.E246K 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-D8-A27G-01 6 151670277 151670277 G T AKAP12 Nonsense_Mutation p.E251* 0.30 TCGA-D8-A27G-01 6 151687572 151687572 G C ZBTB2 Missense_Mutation p.P210R 0.34 tolerated(0.58) benign(0.07) TCGA-D8-A27G-01 6 152782834 152782834 C G SYNE1 Missense_Mutation p.K764N 0.33 probably_damaging(0.993) TCGA-D8-A27G-01 6 15468829 15468829 G A JARID2 Missense_Mutation p.E184K 0.09 tolerated(0.06) benign(0.031) TCGA-D8-A27G-01 6 155504368 155504368 C G TIAM2 Intron 0.24 TCGA-D8-A27G-01 6 155578203 155578203 C G TIAM2 Missense_Mutation p.S1685C 0.31 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D8-A27G-01 6 160206679 160206679 C G TCP1 Intron 0.19 TCGA-D8-A27G-01 6 160328830 160328830 C G MAS1 Missense_Mutation p.F281L 0.21 tolerated(0.06) possibly_damaging(0.831) TCGA-D8-A27G-01 6 160482885 160482885 C T IGF2R Silent p.I1169I 0.33 TCGA-D8-A27G-01 6 160913898 160913898 C T LPAL2 RNA 0.09 TCGA-D8-A27G-01 6 168191766 168191766 G C C6orf123 5'UTR 0.18 TCGA-D8-A27G-01 6 170176735 170176735 C T ERMARD Missense_Mutation p.R569C 0.21 deleterious(0) possibly_damaging(0.479) TCGA-D8-A27G-01 6 17616916 17616916 G C NUP153 Missense_Mutation p.F1395L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 6 18249944 18249944 C T DEK Missense_Mutation p.E234K 0.25 tolerated(0.08) possibly_damaging(0.899) TCGA-D8-A27G-01 6 20402466 20402466 G A E2F3 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) benign(0.019) TCGA-D8-A27G-01 6 24843212 24843212 G C FAM65B Missense_Mutation p.L600V 0.34 tolerated(0.41) benign(0.12) TCGA-D8-A27G-01 6 25471441 25471441 C T LRRC16A Silent p.S245S 0.27 TCGA-D8-A27G-01 6 26056117 26056117 C G HIST1H1C Silent p.A180A 0.10 TCGA-D8-A27G-01 6 26465522 26465522 G - BTN2A1 Frame_Shift_Del p.E275Kfs*20 0.11 TCGA-D8-A27G-01 6 28228226 28228226 G A NKAPL Silent p.Q359Q 0.18 TCGA-D8-A27G-01 6 29643253 29643253 G A ZFP57 Silent p.L88L 0.06 TCGA-D8-A27G-01 6 31133802 31133802 T A POU5F1 Missense_Mutation p.Q143L 0.13 deleterious(0.03) benign(0.344) TCGA-D8-A27G-01 6 32709262 32709262 G A HLA-DQA2 Silent p.L14L 0.25 TCGA-D8-A27G-01 6 33377466 33377466 G T KIFC1 Nonstop_Mutation p.*674Lext*29 0.30 TCGA-D8-A27G-01 6 35588008 35588008 C T FKBP5 Silent p.K98K 0.19 TCGA-D8-A27G-01 6 35588011 35588011 C T FKBP5 Missense_Mutation p.M97I 0.19 deleterious(0) probably_damaging(0.995) TCGA-D8-A27G-01 6 35745264 35745264 C G CLPSL2 Missense_Mutation p.S38C 0.18 deleterious(0.01) probably_damaging(0.938) TCGA-D8-A27G-01 6 35918970 35918970 C T SLC26A8 Silent p.V814V 0.23 TCGA-D8-A27G-01 6 36446965 36446965 G A KCTD20 Missense_Mutation p.E168K 0.36 deleterious(0.03) probably_damaging(0.928) TCGA-D8-A27G-01 6 38885163 38885163 C T DNAH8 Missense_Mutation p.S3213L 0.16 probably_damaging(0.999) TCGA-D8-A27G-01 6 41318535 41318535 G A NCR2 Missense_Mutation p.R255K 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-D8-A27G-01 6 42152498 42152498 C G GUCA1B 3'UTR 0.42 TCGA-D8-A27G-01 6 42532065 42532065 C G UBR2 Missense_Mutation p.S3W 0.31 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-D8-A27G-01 6 43267186 43267186 C T SLC22A7 Missense_Mutation p.A153V 0.22 tolerated(0.8) benign(0.003) TCGA-D8-A27G-01 6 47846040 47846040 C G PTCHD4 Nonstop_Mutation p.*847Sext*3 0.14 TCGA-D8-A27G-01 6 51586751 51586751 C G PKHD1 Intron 0.18 TCGA-D8-A27G-01 6 51921764 51921764 G C PKHD1 Nonsense_Mutation p.S509* 0.20 TCGA-D8-A27G-01 6 52701040 52701040 C G GSTA5 Missense_Mutation p.R89T 0.09 deleterious(0.04) probably_damaging(0.93) TCGA-D8-A27G-01 6 56368803 56368803 C G DST Missense_Mutation p.E3897Q 0.09 probably_damaging(0.999) TCGA-D8-A27G-01 6 83898385 83898385 C G PGM3 Missense_Mutation p.E141Q 0.25 tolerated(0.32) possibly_damaging(0.742) TCGA-D8-A27G-01 6 90453333 90453333 C T MDN1 Missense_Mutation p.G1427S 0.32 probably_damaging(1) TCGA-D8-A27G-01 6 9903633 9903633 C T OFCC1 Intron 0.14 TCGA-D8-A27G-01 7 100675012 100675012 C T MUC17 Silent p.V105V 0.24 TCGA-D8-A27G-01 7 101842130 101842130 G A CUX1 Missense_Mutation p.R659Q 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-D8-A27G-01 7 103113290 103113290 C T RELN Missense_Mutation p.R3451K 0.25 tolerated_low_confidence(0.16) possibly_damaging(0.815) TCGA-D8-A27G-01 7 103155815 103155815 C T RELN Missense_Mutation p.D2646N 0.35 tolerated(0.14) probably_damaging(0.986) TCGA-D8-A27G-01 7 104715186 104715186 C G KMT2E Nonsense_Mutation p.S218* 0.24 TCGA-D8-A27G-01 7 105146666 105146666 C G PUS7 Missense_Mutation p.L151F 0.27 deleterious(0) probably_damaging(0.962) TCGA-D8-A27G-01 7 106840607 106840607 C G HBP1 Missense_Mutation p.A463G 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 7 107254145 107254145 G A BCAP29 Missense_Mutation p.G246D 0.19 deleterious_low_confidence(0) benign(0.046) TCGA-D8-A27G-01 7 107880462 107880462 C G NRCAM Missense_Mutation p.R16T 0.30 tolerated(0.24) benign(0.083) TCGA-D8-A27G-01 7 111451976 111451976 G C DOCK4 Nonsense_Mutation p.S987* 0.24 TCGA-D8-A27G-01 7 11446994 11446994 C T THSD7A Silent p.V1285V 0.17 TCGA-D8-A27G-01 7 117232054 117232054 G C CFTR Missense_Mutation p.K611N 0.40 deleterious(0.01) benign(0.007) TCGA-D8-A27G-01 7 120768504 120768504 C T CPED1 Silent p.F457F 0.32 TCGA-D8-A27G-01 7 127975934 127975934 G A RBM28 Missense_Mutation p.S259L 0.24 tolerated(0.1) benign(0.118) TCGA-D8-A27G-01 7 128484829 128484829 G A FLNC Missense_Mutation p.E1104K 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-D8-A27G-01 7 128845151 128845151 C G SMO Missense_Mutation p.I215M 0.26 deleterious(0) possibly_damaging(0.707) TCGA-D8-A27G-01 7 129064919 129064919 G C AHCYL2 Missense_Mutation p.E549Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-D8-A27G-01 7 133002139 133002139 C G EXOC4 Nonsense_Mutation p.S253* 0.33 TCGA-D8-A27G-01 7 140386936 140386936 C T ADCK2 Silent p.L484L 0.09 TCGA-D8-A27G-01 7 147259301 147259301 G A CNTNAP2 Missense_Mutation p.D617N 0.21 deleterious(0) probably_damaging(0.962) TCGA-D8-A27G-01 7 149421749 149421749 G T KRBA1 Missense_Mutation p.G312V 0.17 tolerated(0.09) probably_damaging(0.998) TCGA-D8-A27G-01 7 150174822 150174822 C T GIMAP8 Missense_Mutation p.S651F 0.28 tolerated(0.11) benign(0.091) TCGA-D8-A27G-01 7 151074240 151074240 G C NUB1 Missense_Mutation p.D617H 0.17 deleterious(0) possibly_damaging(0.889) TCGA-D8-A27G-01 7 151711834 151711834 C T GALNTL5 Missense_Mutation p.H378Y 0.11 tolerated(0.53) benign(0) TCGA-D8-A27G-01 7 151845580 151845580 G A KMT2C Nonsense_Mutation p.R4478* 0.09 TCGA-D8-A27G-01 7 17873687 17873687 C G SNX13 Missense_Mutation p.D529H 0.11 deleterious(0) probably_damaging(0.993) TCGA-D8-A27G-01 7 25175643 25175643 G C C7orf31 Missense_Mutation p.S574W 0.19 deleterious(0.02) probably_damaging(0.911) TCGA-D8-A27G-01 7 2771046 2771046 C T GNA12 Silent p.V305V 0.26 TCGA-D8-A27G-01 7 2771197 2771197 C T GNA12 Missense_Mutation p.S255N 0.24 tolerated(0.07) probably_damaging(0.99) TCGA-D8-A27G-01 7 29152329 29152329 G T CPVL Missense_Mutation p.F93L 0.22 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 7 2987384 2987384 C T CARD11 Silent p.L15L 0.22 TCGA-D8-A27G-01 7 31018925 31018925 C T GHRHR 3'UTR 0.28 TCGA-D8-A27G-01 7 4281470 4281470 G A SDK1 Missense_Mutation p.G2059E 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-D8-A27G-01 7 44073784 44073784 C G RASA4CP RNA 0.35 TCGA-D8-A27G-01 7 44795790 44795790 G A ZMIZ2 5'UTR 0.33 TCGA-D8-A27G-01 7 45122984 45122984 C T NACAD Missense_Mutation p.G932D 0.19 tolerated(0.42) benign(0.004) TCGA-D8-A27G-01 7 45701780 45701780 C T ADCY1 Silent p.F524F 0.22 TCGA-D8-A27G-01 7 47925537 47925537 C G PKD1L1 Silent p.T984T 0.33 TCGA-D8-A27G-01 7 48237925 48237925 C T ABCA13 Silent p.F85F 0.11 TCGA-D8-A27G-01 7 5104349 5104349 G C RBAK Missense_Mutation p.R421T 0.34 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 7 5256731 5256731 G A WIPI2 Silent p.A163A 0.23 TCGA-D8-A27G-01 7 6026983 6026983 C T PMS2 Silent p.Q471Q 0.21 TCGA-D8-A27G-01 7 66532313 66532313 C T TYW1 Silent p.F399F 0.30 TCGA-D8-A27G-01 7 7283329 7283329 G C C1GALT1 Missense_Mutation p.D355H 0.18 deleterious(0.03) benign(0.303) TCGA-D8-A27G-01 7 73938400 73938400 G A GTF2IRD1 Splice_Site p.X368_splice 0.11 TCGA-D8-A27G-01 7 74536717 74536717 G A GTF2IRD2B Silent p.V88V 0.14 TCGA-D8-A27G-01 7 82579161 82579161 C T PCLO Silent p.L3581L 0.16 TCGA-D8-A27G-01 7 82785412 82785412 G A PCLO Missense_Mutation p.S182F 0.22 unknown(0) TCGA-D8-A27G-01 7 97816228 97816228 C T LMTK2 Silent p.L306L 0.16 TCGA-D8-A27G-01 7 98602781 98602781 G A TRRAP Silent p.Q3507Q 0.20 TCGA-D8-A27G-01 7 99144807 99144807 C G FAM200A Missense_Mutation p.E408D 0.26 tolerated(0.16) possibly_damaging(0.576) TCGA-D8-A27G-01 7 99689093 99689093 C T COPS6 Missense_Mutation p.H265Y 0.32 tolerated(0.16) benign(0.049) TCGA-D8-A27G-01 8 102631887 102631887 C G GRHL2 Missense_Mutation p.H407D 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 8 104343750 104343750 C G FZD6 3'UTR 0.08 TCGA-D8-A27G-01 8 110100131 110100131 C T TRHR Silent p.P130P 0.26 TCGA-D8-A27G-01 8 124267582 124267582 G C ZHX1 Nonsense_Mutation p.S202* 0.28 TCGA-D8-A27G-01 8 124696852 124696852 C T ANXA13 Missense_Mutation p.E318K 0.06 deleterious(0.02) benign(0.312) TCGA-D8-A27G-01 8 124982322 124982322 G C FER1L6 Missense_Mutation p.K144N 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A27G-01 8 134050912 134050912 G C SLA Missense_Mutation p.R270G 0.21 deleterious(0) probably_damaging(0.999) TCGA-D8-A27G-01 8 135622750 135622750 G C ZFAT Missense_Mutation p.I199M 0.07 deleterious(0) probably_damaging(0.991) TCGA-D8-A27G-01 8 143928108 143928108 G A GML 3'UTR 0.11 TCGA-D8-A27G-01 8 144899196 144899196 C T PUF60 Missense_Mutation p.E422K 0.15 tolerated(0.2) benign(0.089) TCGA-D8-A27G-01 8 145057223 145057223 C T PARP10 Silent p.Q811Q 0.38 TCGA-D8-A27G-01 8 145058738 145058738 C T PARP10 Missense_Mutation p.E478K 0.25 deleterious(0) probably_damaging(0.956) TCGA-D8-A27G-01 8 145058780 145058780 C T PARP10 Missense_Mutation p.D464N 0.31 deleterious(0) benign(0.001) TCGA-D8-A27G-01 8 145059210 145059210 C T PARP10 Missense_Mutation p.M320I 0.22 tolerated(0.25) benign(0) TCGA-D8-A27G-01 8 145059220 145059220 C T PARP10 Missense_Mutation p.R317K 0.24 tolerated(0.93) benign(0) TCGA-D8-A27G-01 8 146171570 146171570 C T ZNF16 Missense_Mutation p.R8H 0.33 tolerated_low_confidence(0.06) benign(0.006) TCGA-D8-A27G-01 8 1806219 1806219 G A ARHGEF10 Missense_Mutation p.R44K 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.889) TCGA-D8-A27G-01 8 19703292 19703292 C G INTS10 Missense_Mutation p.Q654E 0.32 tolerated(0.1) possibly_damaging(0.546) TCGA-D8-A27G-01 8 2048802 2048802 G A MYOM2 Nonsense_Mutation p.W859* 0.28 TCGA-D8-A27G-01 8 2054142 2054142 G C MYOM2 Missense_Mutation p.E949Q 0.16 tolerated(0.12) possibly_damaging(0.752) TCGA-D8-A27G-01 8 21957369 21957369 C T FAM160B2 Missense_Mutation p.H436Y 0.33 tolerated(0.13) benign(0.005) TCGA-D8-A27G-01 8 27373304 27373304 G A EPHX2 Missense_Mutation p.E269K 0.16 deleterious(0) probably_damaging(0.951) TCGA-D8-A27G-01 8 27762283 27762283 G A SCARA5 Intron 0.20 TCGA-D8-A27G-01 8 28385334 28385334 G A FZD3 Missense_Mutation p.E353K 0.12 deleterious(0) probably_damaging(0.996) TCGA-D8-A27G-01 8 30040766 30040766 C G DCTN6 3'UTR 0.34 TCGA-D8-A27G-01 8 30553959 30553959 C A GSR Nonsense_Mutation p.E245* 0.14 TCGA-D8-A27G-01 8 30601689 30601689 C T UBXN8 5'Flank 0.24 TCGA-D8-A27G-01 8 30969164 30969164 T G WRN Missense_Mutation p.S708A 0.29 deleterious(0.01) possibly_damaging(0.781) TCGA-D8-A27G-01 8 37553647 37553647 C T ZNF703 Silent p.I50I 0.50 TCGA-D8-A27G-01 8 38067752 38067752 C T BAG4 Missense_Mutation p.S372L 0.42 deleterious(0.02) possibly_damaging(0.65) TCGA-D8-A27G-01 8 41530277 41530277 G C ANK1 Missense_Mutation p.S1605C 0.36 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-D8-A27G-01 8 418912 418912 C T FBXO25 3'UTR 0.32 TCGA-D8-A27G-01 8 42698164 42698164 C T THAP1 Intron 0.40 TCGA-D8-A27G-01 8 43033331 43033331 C T HGSNAT Silent p.I322I 0.24 TCGA-D8-A27G-01 8 48887472 48887472 C G MCM4 Missense_Mutation p.S772C 0.24 deleterious(0) probably_damaging(0.992) TCGA-D8-A27G-01 8 49831464 49831464 C T SNAI2 Missense_Mutation p.D237N 0.05 deleterious(0.01) benign(0.348) TCGA-D8-A27G-01 8 52323876 52323876 C T PXDNL Missense_Mutation p.E666K 0.19 deleterious(0) probably_damaging(0.947) TCGA-D8-A27G-01 8 56435862 56435862 C T XKR4 Silent p.L343L 0.59 TCGA-D8-A27G-01 8 56986682 56986682 C T RPS20 Missense_Mutation p.E14K 0.20 tolerated(0.08) benign(0.103) TCGA-D8-A27G-01 8 59409365 59409365 C T CYP7A1 Missense_Mutation p.E236K 0.08 tolerated(0.2) possibly_damaging(0.692) TCGA-D8-A27G-01 8 61654172 61654172 C T CHD7 Nonsense_Mutation p.Q61* 0.26 TCGA-D8-A27G-01 8 67546774 67546774 C G VCPIP1 Missense_Mutation p.E1211Q 0.13 tolerated_low_confidence(0.13) benign(0.095) TCGA-D8-A27G-01 8 68071328 68071328 C A CSPP1 Missense_Mutation p.Q827K 0.31 tolerated(0.08) benign(0.375) TCGA-D8-A27G-01 8 70667861 70667861 G A SLCO5A1 Silent p.L352L 0.14 TCGA-D8-A27G-01 8 82736169 82736169 C G SNX16 Missense_Mutation p.E157Q 0.31 tolerated(0.25) benign(0.043) TCGA-D8-A27G-01 8 86127297 86127297 G C C8orf59 Intron 0.29 TCGA-D8-A27G-01 8 90965699 90965699 G T NBN Missense_Mutation p.H540N 0.24 tolerated(0.55) benign(0.014) TCGA-D8-A27G-01 8 95419752 95419752 G A RAD54B Silent p.F232F 0.13 TCGA-D8-A27G-01 8 95419786 95419786 G C RAD54B Missense_Mutation p.S221C 0.25 tolerated(0.07) benign(0.008) TCGA-D8-A27G-01 8 95893679 95893679 G C CCNE2 3'UTR 0.24 TCGA-D8-A27G-01 8 99101660 99101660 G A C8orf47 Missense_Mutation p.E139K 0.13 deleterious(0.03) benign(0) TCGA-D8-A27G-01 9 100840472 100840472 C G NANS Intron 0.30 TCGA-D8-A27G-01 9 107266827 107266827 C T OR13F1 Missense_Mutation p.S95L 0.25 tolerated(0.31) benign(0.006) TCGA-D8-A27G-01 9 114454003 114454003 G C C9orf84 Missense_Mutation p.F1354L 0.23 tolerated(0.26) benign(0.013) TCGA-D8-A27G-01 9 114454075 114454075 G A C9orf84 Silent p.F1330F 0.23 TCGA-D8-A27G-01 9 114454484 114454484 G C C9orf84 Missense_Mutation p.S1194C 0.14 deleterious(0.01) probably_damaging(0.934) TCGA-D8-A27G-01 9 120476417 120476417 G A TLR4 Missense_Mutation p.E671K 0.13 tolerated(0.1) possibly_damaging(0.742) TCGA-D8-A27G-01 9 123301349 123301349 G C CDK5RAP2 Silent p.L159L 0.21 TCGA-D8-A27G-01 9 123374719 123374719 G A MEGF9 Missense_Mutation p.R348C 0.16 deleterious(0.03) possibly_damaging(0.847) TCGA-D8-A27G-01 9 123527031 123527031 C T FBXW2 Missense_Mutation p.D391N 0.30 tolerated(0.38) possibly_damaging(0.738) TCGA-D8-A27G-01 9 123535049 123535049 C T FBXW2 Missense_Mutation p.D297N 0.24 tolerated(0.14) benign(0.384) TCGA-D8-A27G-01 9 125621222 125621222 G A RC3H2 Missense_Mutation p.S670F 0.09 tolerated(0.1) probably_damaging(0.982) TCGA-D8-A27G-01 9 125659702 125659702 G A RC3H2 Silent p.I29I 0.27 TCGA-D8-A27G-01 9 127101933 127101933 C G NEK6 Missense_Mutation p.L270V 0.30 tolerated(0.11) probably_damaging(1) TCGA-D8-A27G-01 9 128347943 128347943 C T MAPKAP1 Missense_Mutation p.D188N 0.19 deleterious(0.01) benign(0.102) TCGA-D8-A27G-01 9 130579444 130579444 G A ENG Silent p.I575I 0.40 TCGA-D8-A27G-01 9 131670394 131670394 C G LRRC8A Silent p.L317L 0.33 TCGA-D8-A27G-01 9 134049692 134049692 G A NUP214 Silent p.V1048V 0.43 TCGA-D8-A27G-01 9 136305542 136305542 G C ADAMTS13 Missense_Mutation p.E622Q 0.24 deleterious(0) probably_damaging(0.971) TCGA-D8-A27G-01 9 17747112 17747112 G A SH3GL2 Missense_Mutation p.D32N 0.23 deleterious(0) probably_damaging(0.998) TCGA-D8-A27G-01 9 18622283 18622283 G A ADAMTSL1 Missense_Mutation p.D173N 0.21 deleterious(0) probably_damaging(0.987) TCGA-D8-A27G-01 9 2039663 2039663 C T SMARCA2 Nonsense_Mutation p.Q185* 0.10 TCGA-D8-A27G-01 9 2729535 2729535 C T KCNV2 Silent p.I482I 0.24 TCGA-D8-A27G-01 9 3275544 3275544 C T RFX3 Missense_Mutation p.E348K 0.17 tolerated(0.13) benign(0.091) TCGA-D8-A27G-01 9 33280962 33280962 C T CHMP5 3'UTR 0.44 TCGA-D8-A27G-01 9 35704102 35704102 C T TLN1 Silent p.G2039G 0.38 TCGA-D8-A27G-01 9 35707452 35707452 C T TLN1 Missense_Mutation p.A1556T 0.14 tolerated(0.3) benign(0.009) TCGA-D8-A27G-01 9 39100067 39100067 C T CNTNAP3 Missense_Mutation p.E946K 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-D8-A27G-01 9 5787227 5787227 G C ERMP1 Missense_Mutation p.Q878E 0.14 tolerated(0.54) benign(0.001) TCGA-D8-A27G-01 9 71831312 71831312 G C TJP2 Missense_Mutation p.E89Q 0.28 tolerated(0.6) possibly_damaging(0.537) TCGA-D8-A27G-01 9 77761878 77761878 G C OSTF1 3'UTR 0.33 TCGA-D8-A27G-01 9 79853230 79853230 G A VPS13A Missense_Mutation p.E610K 0.27 deleterious(0.05) benign(0.004) TCGA-D8-A27G-01 9 8525027 8525027 G A PTPRD Nonsense_Mutation p.Q193* 0.13 TCGA-D8-A27G-01 9 85615118 85615118 C G RASEF Missense_Mutation p.K563N 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A27G-01 9 90401666 90401666 C T CTSL3P RNA 0.13 TCGA-D8-A27G-01 9 91977111 91977111 C G SECISBP2 3'Flank 0.28 TCGA-D8-A27G-01 9 94841617 94841617 G C SPTLC1 Intron 0.45 TCGA-D8-A27G-01 9 95078334 95078334 C G NOL8 Silent p.L191L 0.08 TCGA-D8-A27G-01 9 95475761 95475761 G C BICD2 3'UTR 0.29 TCGA-D8-A27G-01 9 95609508 95609508 C T ZNF484 Missense_Mutation p.E523K 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-D8-A27G-01 9 99521982 99521982 G C ZNF510 Missense_Mutation p.S377C 0.23 tolerated(0.22) benign(0.326) TCGA-D8-A27G-01 X 107335055 107335055 G A ATG4A 5'UTR 0.30 TCGA-D8-A27G-01 X 108924259 108924259 G A ACSL4 Missense_Mutation p.S249L 0.33 tolerated(0.21) benign(0.082) TCGA-D8-A27G-01 X 109924809 109924809 C G CHRDL1 Missense_Mutation p.E353Q 0.09 tolerated(0.28) probably_damaging(0.997) TCGA-D8-A27G-01 X 11272783 11272783 C T ARHGAP6 Silent p.L211L 0.29 TCGA-D8-A27G-01 X 114141977 114141977 G A HTR2C Silent p.%3D 0.39 TCGA-D8-A27G-01 X 117528092 117528092 C T WDR44 Nonsense_Mutation p.Q301* 0.30 TCGA-D8-A27G-01 X 128946745 128946745 C T ZDHHC9 Silent p.L242L 0.19 TCGA-D8-A27G-01 X 129394424 129394424 G C ZNF280C 5'UTR 0.12 TCGA-D8-A27G-01 X 132351621 132351621 G C TFDP3 Missense_Mutation p.L223V 0.30 tolerated(0.14) probably_damaging(0.919) TCGA-D8-A27G-01 X 133915933 133915933 C T FAM122B Missense_Mutation p.E192K 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-D8-A27G-01 X 134292176 134292176 G C CT55 Nonsense_Mutation p.S162* 0.18 TCGA-D8-A27G-01 X 138698560 138698560 C T MCF2 Missense_Mutation p.D418N 0.38 deleterious(0.01) benign(0.033) TCGA-D8-A27G-01 X 151900474 151900474 G A MAGEA12 Silent p.L109L 0.36 TCGA-D8-A27G-01 X 153210076 153210076 C G RENBP 5'UTR 0.31 TCGA-D8-A27G-01 X 15403102 15403102 C G PIR 3'UTR 0.12 TCGA-D8-A27G-01 X 18662693 18662693 G C RS1 Missense_Mutation p.L127V 0.35 deleterious(0.02) benign(0.202) TCGA-D8-A27G-01 X 18797190 18797190 G C PPEF1 Missense_Mutation p.K207N 0.14 deleterious(0.03) benign(0.098) TCGA-D8-A27G-01 X 229514 229514 G A GTPBP6 Missense_Mutation p.R50C 0.33 deleterious(0.01) probably_damaging(0.95) TCGA-D8-A27G-01 X 23704421 23704421 G C PRDX4 Missense_Mutation p.G262A 0.29 tolerated(0.22) benign(0.066) TCGA-D8-A27G-01 X 24225861 24225861 G C ZFX Missense_Mutation p.E277Q 0.14 tolerated(0.38) possibly_damaging(0.724) TCGA-D8-A27G-01 X 25028418 25028418 C G ARX Missense_Mutation p.E360Q 0.22 deleterious(0.03) benign(0.094) TCGA-D8-A27G-01 X 41413095 41413095 C T CASK Missense_Mutation p.R639Q 0.41 tolerated(0.52) benign(0.024) TCGA-D8-A27G-01 X 48755788 48755788 C G PQBP1 5'UTR 0.35 TCGA-D8-A27G-01 X 48922181 48922181 C T CCDC120 Missense_Mutation p.A202V 0.45 tolerated_low_confidence(0.18) benign(0.05) TCGA-D8-A27G-01 X 50377931 50377931 G C SHROOM4 Missense_Mutation p.S381C 0.36 tolerated(0.13) possibly_damaging(0.524) TCGA-D8-A27G-01 X 54319739 54319739 C T WNK3 Missense_Mutation p.G572E 0.28 tolerated(0.08) benign(0.031) TCGA-D8-A27G-01 X 62569945 62569945 G C SPIN4 3'UTR 0.44 TCGA-D8-A27G-01 X 63405921 63405921 C T AMER1 3'UTR 0.40 TCGA-D8-A27G-01 X 68382501 68382501 C T PJA1 Missense_Mutation p.R194K 0.39 tolerated(0.3) benign(0.039) TCGA-D8-A27G-01 X 68382697 68382697 C T PJA1 Missense_Mutation p.E129K 0.19 deleterious(0.03) probably_damaging(0.983) TCGA-D8-A27G-01 X 68382750 68382750 C G PJA1 Missense_Mutation p.R111T 0.18 deleterious(0.02) benign(0.441) TCGA-D8-A27G-01 X 69640114 69640114 G A KIF4A Silent p.%3D 0.11 TCGA-D8-A27G-01 X 70342620 70342620 G A MED12 Missense_Mutation p.E461K 0.13 probably_damaging(0.983) TCGA-D8-A27G-01 X 70346870 70346870 G T MED12 Missense_Mutation p.D913Y 0.46 benign(0.284) TCGA-D8-A27G-01 X 70586229 70586229 C G TAF1 Nonsense_Mutation p.S22* 0.16 TCGA-D8-A27G-01 X 75003629 75003629 C G MAGEE2 Missense_Mutation p.E420Q 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-D8-A27G-01 X 77294443 77294443 G C ATP7A Missense_Mutation p.E1207D 0.30 deleterious(0) possibly_damaging(0.577) TCGA-D8-A27G-01 X 7811247 7811247 G C VCX Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) unknown(0) TCGA-D8-A27G-01 X 83372093 83372093 G A RPS6KA6 Silent p.F308F 0.21 TCGA-D8-A27G-01 X 84520127 84520127 G T ZNF711 Missense_Mutation p.G261V 0.15 deleterious(0.03) possibly_damaging(0.758) TCGA-D8-A27G-01 X 86773201 86773201 C G KLHL4 Missense_Mutation p.A102G 0.21 tolerated_low_confidence(0.08) benign(0.009) TCGA-D8-A27G-01 X 89177816 89177816 G A TGIF2LX 3'UTR 0.19 TCGA-D8-A27H-01 10 112650367 112650367 G A PDCD4 Missense_Mutation p.R310H 0.33 tolerated(0.17) possibly_damaging(0.519) TCGA-D8-A27H-01 10 75071615 75071615 G C TTC18 Missense_Mutation p.L451V 0.09 tolerated(0.53) benign(0.002) TCGA-D8-A27H-01 11 102248952 102248952 C G BIRC2 3'UTR 0.08 TCGA-D8-A27H-01 11 117110556 117110556 C G RNF214 Missense_Mutation p.Q220E 0.70 tolerated(0.43) benign(0.253) TCGA-D8-A27H-01 11 418935 418935 G T ANO9 Missense_Mutation p.F663L 0.48 tolerated(0.2) benign(0.133) TCGA-D8-A27H-01 11 64535632 64535632 T G SF1 Silent p.T463T 0.21 TCGA-D8-A27H-01 11 85606377 85606377 A C CCDC83 Missense_Mutation p.I185L 0.26 tolerated(0.42) benign(0.009) TCGA-D8-A27H-01 12 101693508 101693508 G A UTP20 Silent p.Q493Q 0.19 TCGA-D8-A27H-01 12 19653099 19653099 C G AEBP2 Missense_Mutation p.L415V 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-D8-A27H-01 12 54515280 54515280 C T RP11-834C11.3 RNA 0.48 TCGA-D8-A27H-01 12 56995411 56995411 G A BAZ2A Silent p.C1332C 0.42 TCGA-D8-A27H-01 12 56995412 56995412 C A BAZ2A Missense_Mutation p.C1332F 0.42 deleterious(0) probably_damaging(0.996) TCGA-D8-A27H-01 12 80226269 80226269 C A PPP1R12A Missense_Mutation p.V164F 0.31 deleterious(0) possibly_damaging(0.579) TCGA-D8-A27H-01 14 52187001 52187001 A C FRMD6 Missense_Mutation p.H418P 0.85 tolerated(0.08) possibly_damaging(0.613) TCGA-D8-A27H-01 14 58895176 58895176 C G KIAA0586 Nonsense_Mutation p.S77* 0.07 TCGA-D8-A27H-01 15 39886350 39886350 C G THBS1 Silent p.T1106T 0.69 TCGA-D8-A27H-01 15 66819708 66819708 G C ZWILCH Missense_Mutation p.Q300H 0.20 deleterious(0) probably_damaging(0.94) TCGA-D8-A27H-01 15 75982713 75982713 G T CSPG4 Silent p.T231T 0.16 TCGA-D8-A27H-01 15 89391205 89391205 G C ACAN Missense_Mutation p.R556S 0.07 deleterious(0) unknown(0) TCGA-D8-A27H-01 15 91436552 91436552 G C FES Missense_Mutation p.E651D 0.14 tolerated(0.17) benign(0.025) TCGA-D8-A27H-01 15 93510571 93510571 G A CHD2 Missense_Mutation p.D673N 0.05 tolerated(0.07) benign(0.295) TCGA-D8-A27H-01 16 15457918 15457918 C G NPIPA5 Missense_Mutation p.M217I 0.19 deleterious(0) possibly_damaging(0.688) TCGA-D8-A27H-01 16 20835829 20835829 T C AC004381.6 Missense_Mutation p.F229L 0.07 deleterious(0) probably_damaging(0.971) TCGA-D8-A27H-01 16 30785451 30785451 G T RNF40 3'UTR 0.69 TCGA-D8-A27H-01 16 3100510 3100510 C G MMP25 Missense_Mutation p.H208Q 0.31 deleterious(0) probably_damaging(1) TCGA-D8-A27H-01 16 3779066 3779066 C G CREBBP Missense_Mutation p.Q1994H 0.59 unknown(0) TCGA-D8-A27H-01 16 49412426 49412426 C G C16orf78 Missense_Mutation p.L106V 0.52 tolerated(0.37) possibly_damaging(0.84) TCGA-D8-A27H-01 16 86546726 86546726 C T FOXF1 3'UTR 0.25 TCGA-D8-A27H-01 17 10318835 10318835 A G MYH8 Missense_Mutation p.I201T 0.57 deleterious(0) probably_damaging(0.942) TCGA-D8-A27H-01 17 10398288 10398288 A T MYH1 Missense_Mutation p.L1809Q 0.52 deleterious(0.01) possibly_damaging(0.795) TCGA-D8-A27H-01 17 15516055 15516055 C G RP11-385D13.1 Missense_Mutation p.S671T 0.26 tolerated_low_confidence(0.79) benign(0.02) TCGA-D8-A27H-01 17 4713241 4713241 G C PLD2 Missense_Mutation p.Q259H 0.55 deleterious(0) possibly_damaging(0.827) TCGA-D8-A27H-01 17 48539896 48539896 A G ACSF2 Missense_Mutation p.N248D 0.12 tolerated(0.7) benign(0.063) TCGA-D8-A27H-01 17 57288711 57288711 G C SMG8 Missense_Mutation p.R433S 0.14 deleterious(0) probably_damaging(0.998) TCGA-D8-A27H-01 17 61568690 61568690 G C ACE Missense_Mutation p.E954Q 0.32 tolerated(0.07) possibly_damaging(0.69) TCGA-D8-A27H-01 17 66929372 66929372 A C ABCA8 Silent p.V169V 0.05 TCGA-D8-A27H-01 17 72469794 72469801 CAGATTTT - CD300A Frame_Shift_Del p.Q54Pfs*3 0.20 TCGA-D8-A27H-01 17 75878015 75878015 G A FLJ45079 Missense_Mutation p.S153F 0.08 possibly_damaging(0.683) TCGA-D8-A27H-01 17 76235908 76235908 C G TMEM235 3'UTR 0.17 TCGA-D8-A27H-01 17 7945743 7945743 A T ALOX15B Missense_Mutation p.D169V 0.76 tolerated(0.15) benign(0.382) TCGA-D8-A27H-01 17 79536048 79536048 C G NPLOC4 Missense_Mutation p.E481D 0.26 tolerated(0.14) benign(0.211) TCGA-D8-A27H-01 17 81043180 81043180 G C METRNL Silent p.S179S 0.37 TCGA-D8-A27H-01 18 29775426 29775426 A G MEP1B Silent p.P76P 0.46 TCGA-D8-A27H-01 18 31318818 31318818 A C ASXL3 Missense_Mutation p.T484P 0.33 benign(0) TCGA-D8-A27H-01 18 61264417 61264417 C G SERPINB13 Missense_Mutation p.H332Q 0.42 tolerated(0.06) probably_damaging(1) TCGA-D8-A27H-01 19 11942231 11942240 TGGAGAAACT - ZNF440 Frame_Shift_Del p.G81Lfs*9 0.23 TCGA-D8-A27H-01 19 15852362 15852362 C T OR10H3 Missense_Mutation p.R54C 0.33 tolerated(0.06) benign(0.012) TCGA-D8-A27H-01 19 35174103 35174103 T C ZNF302 Silent p.D58D 0.28 TCGA-D8-A27H-01 19 40376817 40376817 G A FCGBP Missense_Mutation p.P3869S 0.11 possibly_damaging(0.876) TCGA-D8-A27H-01 19 45206762 45206762 G A CEACAM16 Missense_Mutation p.V61M 0.20 tolerated(0.13) possibly_damaging(0.564) TCGA-D8-A27H-01 19 52888270 52888270 T G ZNF880 Silent p.L479L 0.31 TCGA-D8-A27H-01 19 52888484 52888484 C G ZNF880 Missense_Mutation p.H551D 0.09 tolerated(0.24) benign(0.045) TCGA-D8-A27H-01 19 53453742 53453742 A T ZNF816 Missense_Mutation p.V429D 0.31 tolerated(0.17) benign(0.005) TCGA-D8-A27H-01 19 53884173 53884173 C G ZNF525 Missense_Mutation p.T114R 0.30 deleterious(0) probably_damaging(0.997) TCGA-D8-A27H-01 19 58899504 58899504 G C RPS5 5'UTR 0.07 TCGA-D8-A27H-01 19 9018506 9018506 C G MUC16 Missense_Mutation p.K12556N 0.06 possibly_damaging(0.491) TCGA-D8-A27H-01 1 109439529 109439529 C G GPSM2 Missense_Mutation p.L34V 0.10 deleterious(0) possibly_damaging(0.845) TCGA-D8-A27H-01 1 112003689 112003689 C G ATP5F1 3'UTR 0.12 TCGA-D8-A27H-01 1 147230977 147230977 C G GJA5 Missense_Mutation p.E124Q 0.16 tolerated(0.47) benign(0.099) TCGA-D8-A27H-01 1 152282807 152282807 G A FLG Missense_Mutation p.H1519Y 0.32 benign(0.152) TCGA-D8-A27H-01 1 156701823 156701823 C T RRNAD1 Missense_Mutation p.S51L 0.23 deleterious(0.01) benign(0.236) TCGA-D8-A27H-01 1 156707244 156707244 C G MRPL24 Missense_Mutation p.M199I 0.39 deleterious(0) possibly_damaging(0.507) TCGA-D8-A27H-01 1 1580604 1580604 C G CDK11B Missense_Mutation p.E175Q 0.09 probably_damaging(0.932) TCGA-D8-A27H-01 1 158450097 158450097 G T OR10R2 Missense_Mutation p.A144S 0.43 deleterious(0.01) benign(0.341) TCGA-D8-A27H-01 1 160129216 160129216 G C ATP1A4 Missense_Mutation p.L226F 0.47 deleterious(0.02) probably_damaging(1) TCGA-D8-A27H-01 1 16577968 16577968 C G FBXO42 Missense_Mutation p.V451L 0.22 tolerated_low_confidence(0.72) benign(0.003) TCGA-D8-A27H-01 1 175375432 175375432 C T TNR Missense_Mutation p.R140Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-D8-A27H-01 1 181765933 181765933 C A CACNA1E Missense_Mutation p.S2113Y 0.41 deleterious(0) probably_damaging(0.962) TCGA-D8-A27H-01 1 1922407 1922407 G A C1orf222 5'UTR 0.17 TCGA-D8-A27H-01 1 197446865 197446865 C G CRB1 Silent p.L1359L 0.06 TCGA-D8-A27H-01 1 203683364 203683364 G A ATP2B4 Missense_Mutation p.D789N 0.20 deleterious(0) probably_damaging(0.999) TCGA-D8-A27H-01 1 206904486 206904486 G A MAPKAPK2 Silent p.L257L 0.21 TCGA-D8-A27H-01 1 24123024 24123024 G A GALE Missense_Mutation p.A283V 0.35 deleterious(0.02) probably_damaging(0.916) TCGA-D8-A27H-01 1 25554645 25554645 T G SYF2 Missense_Mutation p.K114Q 0.43 deleterious(0.01) possibly_damaging(0.902) TCGA-D8-A27H-01 1 3550035 3550035 C G WRAP73 Missense_Mutation p.Q283H 0.39 tolerated(0.16) benign(0.002) TCGA-D8-A27H-01 1 36941196 36941196 A T CSF3R Missense_Mutation p.I48N 0.40 deleterious(0) probably_damaging(0.984) TCGA-D8-A27H-01 1 44437957 44437957 G T DPH2 Missense_Mutation p.L432F 0.38 tolerated(0.33) benign(0.001) TCGA-D8-A27H-01 1 67486085 67486085 A C SLC35D1 Silent p.S281S 0.35 TCGA-D8-A27H-01 20 33587427 33587427 G A MYH7B Missense_Mutation p.E1574K 0.39 probably_damaging(0.997) TCGA-D8-A27H-01 20 34451203 34451203 A C PHF20 Missense_Mutation p.E230A 0.26 deleterious(0.01) probably_damaging(1) TCGA-D8-A27H-01 20 39750739 39750739 G C TOP1 Missense_Mutation p.Q713H 0.18 deleterious(0.01) benign(0.153) TCGA-D8-A27H-01 20 46268762 46268762 C G NCOA3 Missense_Mutation p.S1016C 0.35 deleterious(0.03) possibly_damaging(0.687) TCGA-D8-A27H-01 20 47246027 47246027 C A PREX1 Missense_Mutation p.G1576W 0.07 deleterious(0) probably_damaging(0.996) TCGA-D8-A27H-01 20 47682930 47682930 G C CSE1L Missense_Mutation p.R120T 0.28 deleterious(0.02) benign(0.231) TCGA-D8-A27H-01 21 37833619 37833619 G A CLDN14 Silent p.F125F 0.35 TCGA-D8-A27H-01 22 30421701 30421701 G C MTMR3 Missense_Mutation p.V1170L 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-D8-A27H-01 22 45580546 45580546 G C NUP50 3'UTR 0.27 TCGA-D8-A27H-01 2 11354992 11354992 C A ROCK2 Missense_Mutation p.G637V 0.49 tolerated(0.2) benign(0.271) TCGA-D8-A27H-01 2 128283861 128283861 G A IWS1 5'UTR 0.38 TCGA-D8-A27H-01 2 128471382 128471382 C T WDR33 Missense_Mutation p.R1028Q 0.17 tolerated_low_confidence(0.11) possibly_damaging(0.885) TCGA-D8-A27H-01 2 130949653 130949653 C T TUBA3E Silent p.L368L 0.72 TCGA-D8-A27H-01 2 133540494 133540494 A G NCKAP5 Missense_Mutation p.V1297A 0.25 deleterious(0) benign(0.243) TCGA-D8-A27H-01 2 152543948 152543948 G A NEB Silent p.A874A 0.21 TCGA-D8-A27H-01 2 15326973 15326973 T C NBAS Missense_Mutation p.T2202A 0.31 tolerated(0.27) benign(0.002) TCGA-D8-A27H-01 2 176959403 176959403 A C HOXD13 Missense_Mutation p.N326T 0.36 deleterious(0) probably_damaging(1) TCGA-D8-A27H-01 2 179445095 179445095 C G TTN Missense_Mutation p.E22337D 0.35 TCGA-D8-A27H-01 2 187455104 187455104 C G ITGAV Silent p.P13P 0.45 TCGA-D8-A27H-01 2 203630540 203630540 A T FAM117B 3'UTR 0.82 TCGA-D8-A27H-01 2 211082788 211082788 T C ACADL Missense_Mutation p.E91G 0.12 tolerated(0.3) benign(0.033) TCGA-D8-A27H-01 2 225266346 225266346 C G FAM124B Missense_Mutation p.R47P 0.90 deleterious(0) probably_damaging(0.935) TCGA-D8-A27H-01 2 231774802 231774802 G A GPR55 Silent p.I292I 0.33 TCGA-D8-A27H-01 2 234758445 234758445 G C HJURP Missense_Mutation p.P101A 0.32 tolerated(0.67) benign(0.018) TCGA-D8-A27H-01 2 31412173 31412173 C T CAPN14 Missense_Mutation p.V487I 0.33 tolerated(1) benign(0.003) TCGA-D8-A27H-01 2 48936098 48936098 C A LHCGR Silent p.G223G 0.28 TCGA-D8-A27H-01 2 71654442 71654442 G C ZNF638 Missense_Mutation p.D1815H 0.06 deleterious(0.01) possibly_damaging(0.717) TCGA-D8-A27H-01 3 101574727 101574727 G C NFKBIZ Missense_Mutation p.G602A 0.06 deleterious(0) probably_damaging(0.995) TCGA-D8-A27H-01 3 126191121 126191121 C G ZXDC Missense_Mutation p.S312T 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-D8-A27H-01 3 128707723 128707723 T C KIAA1257 Missense_Mutation p.K101E 0.28 deleterious(0.01) possibly_damaging(0.677) TCGA-D8-A27H-01 3 134327635 134327635 C G KY Missense_Mutation p.D316H 0.46 deleterious(0.01) probably_damaging(0.981) TCGA-D8-A27H-01 3 142137414 142137414 A T XRN1 Missense_Mutation p.F426L 0.21 tolerated(0.14) benign(0.004) TCGA-D8-A27H-01 3 142740210 142740210 G A U2SURP Missense_Mutation p.R251K 0.11 tolerated(0.61) benign(0.014) TCGA-D8-A27H-01 3 164908611 164908611 G A SLITRK3 Missense_Mutation p.P3L 0.24 deleterious_low_confidence(0.01) benign(0.012) TCGA-D8-A27H-01 3 178968569 178968569 G A KCNMB3 Silent p.F74F 0.19 TCGA-D8-A27H-01 3 193016987 193016987 T C ATP13A5 Silent p.L927L 0.59 TCGA-D8-A27H-01 3 196735702 196735702 A G MFI2 Missense_Mutation p.Y554H 0.59 deleterious(0.01) probably_damaging(0.971) TCGA-D8-A27H-01 3 44488277 44488277 G T ZNF445 Missense_Mutation p.S962R 0.53 tolerated(0.25) benign(0.307) TCGA-D8-A27H-01 4 122825607 122825607 A G TRPC3 Missense_Mutation p.V708A 0.34 tolerated(0.54) possibly_damaging(0.81) TCGA-D8-A27H-01 4 128938562 128938562 G C C4orf29 Missense_Mutation p.G172A 0.46 deleterious(0.03) benign(0.219) TCGA-D8-A27H-01 4 183603098 183603098 G T TENM3 Nonsense_Mutation p.G656* 0.39 TCGA-D8-A27H-01 4 22748975 22748975 A G GBA3 Missense_Mutation p.I115V 0.51 tolerated(0.23) benign(0.002) TCGA-D8-A27H-01 4 37445491 37445491 A T KIAA1239 Missense_Mutation p.K627N 0.42 tolerated(0.33) benign(0.007) TCGA-D8-A27H-01 4 77100814 77100814 G C SCARB2 Missense_Mutation p.I156M 0.73 tolerated(0.05) benign(0.44) TCGA-D8-A27H-01 5 1036436 1036436 G A NKD2 Missense_Mutation p.E242K 0.36 deleterious(0) probably_damaging(0.928) TCGA-D8-A27H-01 5 1036488 1036488 G A NKD2 Missense_Mutation p.R259K 0.35 tolerated(1) benign(0.002) TCGA-D8-A27H-01 5 141029054 141029054 C A FCHSD1 Missense_Mutation p.A95S 0.50 tolerated(0.2) benign(0.06) TCGA-D8-A27H-01 5 153149829 153149829 G A GRIA1 Silent p.R718R 0.12 TCGA-D8-A27H-01 5 177164037 177164047 CTTTACCGTGT - FAM153A Splice_Site p.X133_splice 0.83 TCGA-D8-A27H-01 5 36177372 36177372 G C SKP2 Missense_Mutation p.D347H 0.23 tolerated(0.32) benign(0.016) TCGA-D8-A27H-01 5 5444434 5444434 T C KIAA0947 Missense_Mutation p.L140P 0.22 deleterious(0) probably_damaging(0.999) TCGA-D8-A27H-01 5 5464629 5464629 C T KIAA0947 Missense_Mutation p.P1728S 0.42 deleterious(0) probably_damaging(1) TCGA-D8-A27H-01 6 127608175 127608175 A C RNF146 Missense_Mutation p.L139F 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A27H-01 6 152686119 152686119 C G SYNE1 Missense_Mutation p.Q3336H 0.10 possibly_damaging(0.907) TCGA-D8-A27H-01 6 26158358 26158358 C G HIST1H2BD 5'Flank 0.11 TCGA-D8-A27H-01 6 28402746 28402746 C G ZSCAN23 Missense_Mutation p.Q222H 0.36 tolerated(0.23) benign(0.365) TCGA-D8-A27H-01 6 33257979 33257979 G C PFDN6 Missense_Mutation p.Q31H 0.50 deleterious(0) probably_damaging(0.994) TCGA-D8-A27H-01 6 90388361 90388361 T - MDN1 Frame_Shift_Del p.K4123Nfs*40 0.36 TCGA-D8-A27H-01 7 100244378 100244378 C A ACTL6B Missense_Mutation p.R338L 0.55 deleterious(0) probably_damaging(0.975) TCGA-D8-A27H-01 7 103183194 103183194 C G RELN Missense_Mutation p.D2219H 0.34 deleterious(0) probably_damaging(1) TCGA-D8-A27H-01 7 107330598 107330598 C G SLC26A4 Missense_Mutation p.I393M 0.10 tolerated(0.15) benign(0.175) TCGA-D8-A27H-01 7 138968722 138968722 C T UBN2 Missense_Mutation p.T1024M 0.49 deleterious_low_confidence(0.04) benign(0.04) TCGA-D8-A27H-01 7 142498863 142498863 T A TRBC2 Missense_Mutation p.V47E 0.22 deleterious(0) probably_damaging(1) TCGA-D8-A27H-01 7 142498864 142498864 G A TRBC2 Silent p.V47V 0.22 TCGA-D8-A27H-01 7 154561218 154561218 C T DPP6 Silent p.I325I 0.39 TCGA-D8-A27H-01 7 27219300 27219300 C A RP1-170O19.20 5'UTR 0.49 TCGA-D8-A27H-01 7 38424487 38424487 G A AMPH Missense_Mutation p.L674F 0.38 tolerated(0.14) possibly_damaging(0.791) TCGA-D8-A27H-01 7 66105436 66105436 C G KCTD7 3'UTR 0.36 TCGA-D8-A27H-01 7 99799803 99799803 C T STAG3 Silent p.V801V 0.10 TCGA-D8-A27H-01 8 110510755 110510755 C A PKHD1L1 Missense_Mutation p.P3555H 0.06 tolerated(0.19) probably_damaging(0.948) TCGA-D8-A27H-01 8 125464021 125464021 G C TRMT12 Missense_Mutation p.D285H 0.09 deleterious(0.04) benign(0.224) TCGA-D8-A27H-01 8 26238136 26238136 C G BNIP3L 5'Flank 0.11 TCGA-D8-A27H-01 8 59407066 59407066 T G CYP7A1 Missense_Mutation p.L346F 0.38 deleterious(0) probably_damaging(0.985) TCGA-D8-A27H-01 8 82441695 82441695 G A FABP12 Missense_Mutation p.T75M 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-D8-A27H-01 9 128070045 128070045 A G GAPVD1 Missense_Mutation p.N443D 0.14 tolerated(0.11) benign(0.133) TCGA-D8-A27H-01 9 35449946 35449946 G C ATP8B5P RNA 0.07 TCGA-D8-A27H-01 9 6592147 6592147 G C GLDC Missense_Mutation p.S493C 0.13 deleterious(0.02) possibly_damaging(0.885) TCGA-D8-A27H-01 9 72131068 72131068 G C APBA1 Missense_Mutation p.I353M 0.25 deleterious(0) probably_damaging(0.997) TCGA-D8-A27H-01 9 74345042 74345042 T G TMEM2 Missense_Mutation p.D634A 0.34 deleterious(0) probably_damaging(0.996) TCGA-D8-A27H-01 9 77400841 77400841 G C TRPM6 Missense_Mutation p.F956L 0.10 tolerated(0.59) benign(0.074) TCGA-D8-A27H-01 X 110494202 110494202 C G CAPN6 Silent p.L367L 0.48 TCGA-D8-A27H-01 X 119738069 119738069 C G MCTS1 5'Flank 0.10 TCGA-D8-A27H-01 X 133674577 133674577 C T MIR450A2 RNA 0.18 TCGA-D8-A27H-01 X 133938207 133938220 CAAAAGCAGTGTCC - FAM122C 5'Flank 0.35 TCGA-D8-A27H-01 X 134421701 134421701 C T ZNF75D Missense_Mutation p.E301K 0.10 tolerated(0.99) benign(0) TCGA-D8-A27H-01 X 147027089 147027089 C G FMR1 Missense_Mutation p.R564G 0.40 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-D8-A27H-01 X 153716037 153716037 G A SLC10A3 Missense_Mutation p.R415W 0.61 deleterious(0) probably_damaging(0.912) TCGA-D8-A27H-01 X 19947961 19947973 GTGAACCGTAAAC - CXorf23 Frame_Shift_Del p.R650Lfs*15 0.68 TCGA-D8-A27I-01 11 112019371 112019371 C T IL18 Silent p.E105E 0.10 TCGA-D8-A27I-01 11 11964387 11964387 A G USP47 Missense_Mutation p.D872G 0.25 tolerated(0.08) probably_damaging(0.954) TCGA-D8-A27I-01 11 64085718 64085718 C T PRDX5 Missense_Mutation p.R11C 0.13 deleterious_low_confidence(0.03) benign(0.446) TCGA-D8-A27I-01 12 22068664 22068664 G T ABCC9 Missense_Mutation p.P252T 0.14 deleterious(0) probably_damaging(0.994) TCGA-D8-A27I-01 12 52162755 52162755 G A SCN8A Missense_Mutation p.R1003H 0.20 deleterious(0) probably_damaging(1) TCGA-D8-A27I-01 13 19752451 19752451 C T TUBA3C Missense_Mutation p.A104T 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.516) TCGA-D8-A27I-01 15 29443953 29443953 G C FAM189A1 Missense_Mutation p.S205C 0.18 deleterious(0.02) possibly_damaging(0.869) TCGA-D8-A27I-01 16 23200787 23200787 G A SCNN1G Missense_Mutation p.R138Q 0.23 tolerated(0.23) probably_damaging(1) TCGA-D8-A27I-01 16 68842433 68842433 A - CDH1 Frame_Shift_Del p.N166Mfs*49 0.26 TCGA-D8-A27I-01 17 46846360 46846360 C G TTLL6 Missense_Mutation p.E889D 0.09 tolerated_low_confidence(0.18) benign(0.028) TCGA-D8-A27I-01 17 48777007 48777007 C A ANKRD40 Silent p.R177R 0.09 TCGA-D8-A27I-01 19 17476703 17476703 G A PLVAP Missense_Mutation p.R191C 0.21 deleterious(0) probably_damaging(0.959) TCGA-D8-A27I-01 19 43866394 43866394 C T CD177 3'UTR 0.17 TCGA-D8-A27I-01 1 151379720 151379720 T C POGZ Missense_Mutation p.N808S 0.14 tolerated(0.59) benign(0.223) TCGA-D8-A27I-01 1 154988058 154988058 G C ZBTB7B Missense_Mutation p.D342H 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-D8-A27I-01 1 237777819 237777819 A T RYR2 Missense_Mutation p.E1797D 0.34 possibly_damaging(0.843) TCGA-D8-A27I-01 1 248436177 248436177 T C OR2T33 Missense_Mutation p.N314D 0.18 tolerated(0.61) benign(0.009) TCGA-D8-A27I-01 21 19770211 19770211 C G TMPRSS15 Missense_Mutation p.R110T 0.14 tolerated(0.06) benign(0.049) TCGA-D8-A27I-01 22 37966365 37966365 C A LGALS2 Nonsense_Mutation p.E102* 0.12 TCGA-D8-A27I-01 22 46719150 46719150 C T GTSE1 Missense_Mutation p.S499L 0.15 tolerated(0.09) possibly_damaging(0.59) TCGA-D8-A27I-01 2 150071303 150071303 G A LYPD6B 3'UTR 0.25 TCGA-D8-A27I-01 2 174096948 174096948 A G MLTK Missense_Mutation p.K354R 0.06 tolerated(0.23) benign(0.213) TCGA-D8-A27I-01 3 112648154 112648154 C A CD200R1 Missense_Mutation p.D135Y 0.10 deleterious(0) probably_damaging(0.98) TCGA-D8-A27I-01 3 152165442 152165442 A G MBNL1 Missense_Mutation p.K299E 0.15 deleterious(0) unknown(0) TCGA-D8-A27I-01 3 197556450 197556451 AA - LRCH3 Frame_Shift_Del p.K265Sfs*5 0.14 TCGA-D8-A27I-01 4 39439521 39439521 G A KLB Missense_Mutation p.R504Q 0.15 tolerated(1) benign(0.004) TCGA-D8-A27I-01 5 126792857 126792857 T C MEGF10 Silent p.N1090N 0.18 TCGA-D8-A27I-01 5 140730020 140730020 C T PCDHGB1 Missense_Mutation p.R65W 0.43 deleterious(0) benign(0.103) TCGA-D8-A27I-01 5 161324182 161324182 C T GABRA1 Silent p.Y375Y 0.14 TCGA-D8-A27I-01 5 33658359 33658359 G A ADAMTS12 Missense_Mutation p.R374C 0.18 deleterious(0) probably_damaging(0.997) TCGA-D8-A27I-01 5 434764 434764 C T AHRR Missense_Mutation p.R659W 0.38 tolerated(0.1) benign(0.006) TCGA-D8-A27I-01 6 117130687 117130687 C G GPRC6A Silent p.G96G 0.15 TCGA-D8-A27I-01 7 148815337 148815337 T C ZNF425 Missense_Mutation p.N41S 0.19 deleterious(0) probably_damaging(1) TCGA-D8-A27I-01 7 1607460 1607460 G C PSMG3 Missense_Mutation p.N81K 0.11 tolerated(0.07) benign(0.105) TCGA-D8-A27I-01 8 68062079 68062079 A G CSPP1 Silent p.T674T 0.17 TCGA-D8-A27I-01 9 111663920 111663920 G A IKBKAP Silent p.I632I 0.15 TCGA-D8-A27I-01 9 123922564 123922564 G A CNTRL Missense_Mutation p.M1691I 0.22 benign(0.002) TCGA-D8-A27I-01 9 130941543 130941543 C A CIZ1 Missense_Mutation p.V315F 0.07 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D8-A27K-01 10 123954680 123954680 C T TACC2 Missense_Mutation p.P1987L 0.67 benign(0.021) TCGA-D8-A27K-01 10 8111558 8111559 - AATA GATA3 Frame_Shift_Ins p.I351Kfs*3 0.19 TCGA-D8-A27K-01 12 31613237 31613237 G C DENND5B Missense_Mutation p.P328R 0.25 deleterious(0) probably_damaging(1) TCGA-D8-A27K-01 12 55725992 55725992 G A OR6C3 Missense_Mutation p.V170I 0.22 tolerated_low_confidence(0.83) benign(0.021) TCGA-D8-A27K-01 13 32753825 32753825 C T FRY Missense_Mutation p.P962L 0.24 deleterious(0.02) benign(0.065) TCGA-D8-A27K-01 14 23792274 23792274 A G PABPN1 Missense_Mutation p.N178S 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A27K-01 15 34064135 34064135 C A RYR3 Nonsense_Mutation p.S2944* 0.29 TCGA-D8-A27K-01 17 47246211 47246211 C T B4GALNT2 Nonsense_Mutation p.R482* 0.39 TCGA-D8-A27K-01 17 79662012 79662012 G A HGS Missense_Mutation p.S345N 0.33 tolerated(0.08) possibly_damaging(0.878) TCGA-D8-A27K-01 1 198675930 198675930 G A PTPRC Silent p.K251K 0.13 TCGA-D8-A27K-01 1 231131566 231131567 - A ARV1 Frame_Shift_Ins p.P174Afs*14 0.33 TCGA-D8-A27K-01 1 55251674 55251674 C T TTC22 Silent p.A334A 0.42 TCGA-D8-A27K-01 1 79120883 79120883 A G IFI44 Missense_Mutation p.I227V 0.31 tolerated(0.26) benign(0.008) TCGA-D8-A27K-01 2 15651439 15651439 A T NBAS Missense_Mutation p.V261E 0.36 tolerated(1) benign(0.008) TCGA-D8-A27K-01 3 178916944 178916946 AAG - PIK3CA In_Frame_Del p.K111del 0.29 TCGA-D8-A27K-01 5 115822497 115822497 G A SEMA6A Missense_Mutation p.R304C 0.22 deleterious(0) possibly_damaging(0.74) TCGA-D8-A27K-01 5 76173644 76173644 A G S100Z Missense_Mutation p.K96R 0.28 tolerated(0.06) benign(0.01) TCGA-D8-A27K-01 6 154412457 154412457 T C OPRM1 Silent p.Y431Y 0.22 TCGA-D8-A27K-01 6 18132371 18132371 C T TPMT Silent p.R206R 0.23 TCGA-D8-A27K-01 6 44413391 44413391 G C CDC5L Splice_Site p.X698_splice 0.29 TCGA-D8-A27K-01 7 150034402 150034402 G A LRRC61 Missense_Mutation p.R151Q 0.50 tolerated(0.31) benign(0.001) TCGA-D8-A27K-01 7 44713499 44713499 G A OGDH Silent p.E249E 0.16 TCGA-D8-A27K-01 8 30890012 30890012 C T PURG Missense_Mutation p.R96Q 0.36 tolerated(0.08) probably_damaging(0.998) TCGA-D8-A27K-01 X 107402723 107402723 C A COL4A6 Missense_Mutation p.R1595L 0.33 possibly_damaging(0.466) TCGA-D8-A27L-01 10 103908402 103908402 C T PPRC1 Missense_Mutation p.S1523L 0.35 deleterious(0) benign(0.307) TCGA-D8-A27L-01 10 89624271 89624272 - T PTEN Frame_Shift_Ins p.Y16Lfs*28 0.29 TCGA-D8-A27L-01 11 118348902 118348902 G A KMT2A Silent p.K1185K 0.07 TCGA-D8-A27L-01 11 62298191 62298191 C T AHNAK Missense_Mutation p.G1233E 0.06 probably_damaging(1) TCGA-D8-A27L-01 11 63764394 63764394 T C OTUB1 Missense_Mutation p.I135T 0.21 tolerated(0.08) possibly_damaging(0.707) TCGA-D8-A27L-01 14 94931066 94931066 C G SERPINA9 Missense_Mutation p.R361T 0.07 tolerated(0.5) benign(0.005) TCGA-D8-A27L-01 15 75641328 75641328 G A NEIL1 Missense_Mutation p.E28K 0.35 tolerated(0.38) possibly_damaging(0.852) TCGA-D8-A27L-01 16 31141789 31141789 C T KAT8 Missense_Mutation p.S340F 0.30 deleterious(0) probably_damaging(1) TCGA-D8-A27L-01 16 723516 723516 C T RHOT2 Silent p.F589F 0.33 TCGA-D8-A27L-01 18 19088425 19088425 C T GREB1L Silent p.H1536H 0.13 TCGA-D8-A27L-01 19 24270126 24270126 G A ZNF254 Missense_Mutation p.R6K 0.14 tolerated(0.87) benign(0.001) TCGA-D8-A27L-01 19 31767326 31767326 G T TSHZ3 3'UTR 0.19 TCGA-D8-A27L-01 19 47535538 47535538 C T NPAS1 Missense_Mutation p.P121S 0.27 tolerated(0.15) benign(0.002) TCGA-D8-A27L-01 19 49100156 49100156 G A SULT2B1 Missense_Mutation p.R269H 0.16 tolerated(0.47) benign(0.003) TCGA-D8-A27L-01 19 58423433 58423433 G A ZNF417 Missense_Mutation p.S53L 0.12 deleterious(0) probably_damaging(0.991) TCGA-D8-A27L-01 1 156641715 156641715 C T NES Silent p.L755L 0.05 TCGA-D8-A27L-01 1 159284261 159284261 G A OR10J3 Silent p.F63F 0.07 TCGA-D8-A27L-01 1 201772760 201772760 C G NAV1 Nonsense_Mutation p.S1186* 0.13 TCGA-D8-A27L-01 1 47611857 47611857 G A CYP4A22 Intron 0.13 TCGA-D8-A27L-01 1 8426006 8426006 C T RERE Nonsense_Mutation p.W438* 0.16 TCGA-D8-A27L-01 20 42195054 42195054 G A SGK2 Missense_Mutation p.M33I 0.23 tolerated_low_confidence(0.09) benign(0.001) TCGA-D8-A27L-01 20 58441392 58441392 C T SYCP2 Missense_Mutation p.E1426K 0.06 deleterious(0) possibly_damaging(0.898) TCGA-D8-A27L-01 22 37482397 37482397 G A TMPRSS6 Missense_Mutation p.A309V 0.27 tolerated(0.12) benign(0.222) TCGA-D8-A27L-01 2 175215434 175215434 C T CIR1 Missense_Mutation p.E211K 0.06 tolerated(0.09) unknown(0) TCGA-D8-A27L-01 2 178417084 178417084 T C TTC30B Silent p.V136V 0.27 TCGA-D8-A27L-01 2 207175999 207175999 G C ZDBF2 Silent p.L2249L 0.10 TCGA-D8-A27L-01 2 216226292 216226292 C T FN1 Missense_Mutation p.D2474N 0.08 tolerated_low_confidence(0.63) benign(0.007) TCGA-D8-A27L-01 2 27258507 27258507 G A TMEM214 Missense_Mutation p.R183Q 0.07 deleterious(0.04) benign(0.238) TCGA-D8-A27L-01 2 27447710 27447710 A G CAD Missense_Mutation p.Y451C 0.22 deleterious(0.01) possibly_damaging(0.824) TCGA-D8-A27L-01 2 86709187 86709187 G A KDM3A Missense_Mutation p.G883S 0.19 tolerated(1) possibly_damaging(0.871) TCGA-D8-A27L-01 2 97268573 97268573 G C KANSL3 Missense_Mutation p.Q726E 0.16 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-D8-A27L-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.28 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A27L-01 3 186953790 186953790 G A MASP1 Silent p.P623P 0.23 TCGA-D8-A27L-01 3 194080618 194080618 G A LRRC15 Silent p.F391F 0.22 TCGA-D8-A27L-01 3 194080750 194080750 C T LRRC15 Silent p.T347T 0.15 TCGA-D8-A27L-01 3 28381965 28381965 G C AZI2 Missense_Mutation p.I48M 0.10 deleterious(0) possibly_damaging(0.813) TCGA-D8-A27L-01 3 71021818 71021818 G A FOXP1 Missense_Mutation p.R516C 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A27L-01 4 11401382 11401382 G A HS3ST1 Missense_Mutation p.A83V 0.29 tolerated(0.05) probably_damaging(0.998) TCGA-D8-A27L-01 4 114158316 114158316 C T ANK2 Silent p.D219D 0.15 TCGA-D8-A27L-01 5 140788421 140788421 G A PCDHGB6 Missense_Mutation p.G218R 0.24 deleterious(0) probably_damaging(1) TCGA-D8-A27L-01 5 31545752 31545752 G A C5orf22 Splice_Site p.X331_splice 0.23 TCGA-D8-A27L-01 5 38942299 38942299 G A RICTOR 3'UTR 0.12 TCGA-D8-A27L-01 5 56180536 56180537 - A MAP3K1 Frame_Shift_Ins p.A1290Sfs*19 0.23 TCGA-D8-A27L-01 5 56180586 56180588 CAT - MAP3K1 In_Frame_Del p.I1307del 0.19 TCGA-D8-A27L-01 6 10419753 10419753 C T TFAP2A 5'Flank 0.21 TCGA-D8-A27L-01 7 143056010 143056010 G C FAM131B Missense_Mutation p.Q126E 0.11 tolerated_low_confidence(0.27) benign(0.359) TCGA-D8-A27L-01 7 151917646 151917646 G C KMT2C Nonsense_Mutation p.S1225* 0.09 TCGA-D8-A27L-01 8 108264003 108264003 G A ANGPT1 3'UTR 0.10 TCGA-D8-A27L-01 8 87568513 87568513 G A CPNE3 Missense_Mutation p.E480K 0.08 tolerated(0.15) possibly_damaging(0.522) TCGA-D8-A27L-01 9 114290002 114290002 G A ZNF483 Silent p.R109R 0.25 TCGA-D8-A27L-01 9 125512395 125512395 C T OR1L6 Missense_Mutation p.T90I 0.05 tolerated(0.05) benign(0.033) TCGA-D8-A27L-01 X 110385364 110385364 T A PAK3 Silent p.L72L 0.12 TCGA-D8-A27L-01 X 12736552 12736552 C A FRMPD4 Missense_Mutation p.Q1203K 0.24 deleterious_low_confidence(0) benign(0.362) TCGA-D8-A27L-01 X 154007503 154007503 G A MPP1 Silent p.F450F 0.05 TCGA-D8-A27L-01 X 48547770 48547770 T G WAS Missense_Mutation p.V467G 0.15 deleterious(0) unknown(0) TCGA-D8-A27L-01 X 84510486 84510486 G A ZNF711 Missense_Mutation p.E101K 0.04 deleterious(0.01) possibly_damaging(0.517) TCGA-D8-A27M-01 11 104776204 104776204 G A RP11-693N9.2 RNA 0.36 TCGA-D8-A27M-01 11 124489712 124489712 G C PANX3 Missense_Mutation p.D354H 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A27M-01 11 126278365 126278365 G C ST3GAL4 Missense_Mutation p.E201Q 0.36 tolerated(0.26) possibly_damaging(0.698) TCGA-D8-A27M-01 11 134090556 134090556 T A NCAPD3 Missense_Mutation p.E43D 0.09 tolerated(0.08) possibly_damaging(0.874) TCGA-D8-A27M-01 11 1862789 1862789 G C TNNI2 3'UTR 0.18 TCGA-D8-A27M-01 11 43940636 43940636 G A ALKBH3 Missense_Mutation p.D240N 0.23 tolerated(0.21) benign(0.069) TCGA-D8-A27M-01 11 67352214 67352214 C G GSTP1 Missense_Mutation p.T68S 0.26 tolerated(0.13) benign(0.002) TCGA-D8-A27M-01 11 72468901 72468901 C T STARD10 Missense_Mutation p.R163Q 0.20 deleterious(0) probably_damaging(0.971) TCGA-D8-A27M-01 12 27654981 27654981 G A SMCO2 Missense_Mutation p.R320H 0.26 tolerated(0.1) benign(0.361) TCGA-D8-A27M-01 12 46246569 46246569 G T ARID2 Missense_Mutation p.A1555S 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-D8-A27M-01 12 70964809 70964809 T C PTPRB Missense_Mutation p.T1123A 0.07 deleterious(0) probably_damaging(0.998) TCGA-D8-A27M-01 13 109496701 109496701 G C MYO16 Missense_Mutation p.V348L 0.17 tolerated(0.28) benign(0.036) TCGA-D8-A27M-01 13 114292024 114292024 C G TFDP1 Intron 0.15 TCGA-D8-A27M-01 13 76112056 76112056 G T COMMD6 5'Flank 0.52 TCGA-D8-A27M-01 14 22564822 22564822 G A TRDV1 Silent p.A91A 0.25 TCGA-D8-A27M-01 14 24808802 24808802 G T RIPK3 Missense_Mutation p.P8T 0.16 tolerated(0.38) benign(0.118) TCGA-D8-A27M-01 15 30011076 30011076 C G TJP1 Missense_Mutation p.Q1090H 0.35 tolerated_low_confidence(0.2) benign(0.003) TCGA-D8-A27M-01 15 38990578 38990578 C G C15orf53 Silent p.P124P 0.41 TCGA-D8-A27M-01 15 90342682 90342682 T G ANPEP Missense_Mutation p.Q643P 0.33 deleterious(0.03) possibly_damaging(0.699) TCGA-D8-A27M-01 16 3336103 3336103 C T ZNF263 Silent p.L241L 0.19 TCGA-D8-A27M-01 16 4057514 4057514 C G ADCY9 Missense_Mutation p.R580P 0.32 tolerated(0.33) benign(0.079) TCGA-D8-A27M-01 16 57931412 57931412 G T CNGB1 Missense_Mutation p.A1044D 0.25 deleterious(0) probably_damaging(0.999) TCGA-D8-A27M-01 16 71318994 71318994 A C CMTR2 Missense_Mutation p.F277C 0.25 deleterious(0) probably_damaging(1) TCGA-D8-A27M-01 16 88787655 88787655 G T PIEZO1 Missense_Mutation p.P1863T 0.15 tolerated(0.15) benign(0.025) TCGA-D8-A27M-01 17 29670148 29670154 TAAAAGG - NF1 Splice_Site p.X2397_splice 0.25 TCGA-D8-A27M-01 17 41223086 41223166 AGCTGGACTCTGGGCAGATTCTGCAACTTTCAATTGGGGAACTTTCAATGCAGAGGTTGAAGATGGTATGTTGCCAACACG - BRCA1 In_Frame_Del p.R1610_A1636del 0.08 TCGA-D8-A27M-01 17 71232169 71232169 C G C17orf80 Nonsense_Mutation p.S183* 0.08 TCGA-D8-A27M-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.37 TCGA-D8-A27M-01 19 45912866 45912866 C T ERCC1 3'Flank 0.33 TCGA-D8-A27M-01 19 55106797 55106797 C A LILRA1 Nonsense_Mutation p.C197* 0.28 TCGA-D8-A27M-01 1 12374322 12374322 C A VPS13D Silent p.I2362I 0.14 TCGA-D8-A27M-01 1 154310185 154310185 T C ATP8B2 Intron 0.11 TCGA-D8-A27M-01 1 158435435 158435435 T G OR10K1 Missense_Mutation p.F28L 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-D8-A27M-01 1 161519730 161519730 G A FCGR3A 5'UTR 0.09 TCGA-D8-A27M-01 1 171250104 171250104 C T FMO1 Silent p.Y269Y 0.11 TCGA-D8-A27M-01 1 180062936 180062936 A G CEP350 Missense_Mutation p.I2566V 0.23 benign(0.093) TCGA-D8-A27M-01 1 201022388 201022388 C A CACNA1S Silent p.V1270V 0.14 TCGA-D8-A27M-01 1 210267922 210267922 C T SYT14 Missense_Mutation p.A278V 0.11 deleterious(0) benign(0.373) TCGA-D8-A27M-01 1 26508367 26508367 A C CNKSR1 Missense_Mutation p.N138H 0.17 tolerated(0.12) probably_damaging(1) TCGA-D8-A27M-01 1 90180366 90180366 C A LRRC8C Missense_Mutation p.P746Q 0.25 deleterious(0.02) possibly_damaging(0.888) TCGA-D8-A27M-01 1 984735 984735 A T AGRN Missense_Mutation p.E1473V 0.28 deleterious(0) probably_damaging(0.979) TCGA-D8-A27M-01 20 24954310 24954310 G C APMAP Missense_Mutation p.T131S 0.30 tolerated(0.3) benign(0.019) TCGA-D8-A27M-01 20 2618150 2618150 G C TMC2 Missense_Mutation p.V806L 0.08 tolerated(0.37) benign(0.002) TCGA-D8-A27M-01 20 50238710 50238710 A T ATP9A Missense_Mutation p.V673D 0.40 deleterious(0) probably_damaging(0.965) TCGA-D8-A27M-01 22 21174022 21174022 A C PI4KA Missense_Mutation p.N232K 0.14 tolerated(0.11) benign(0.269) TCGA-D8-A27M-01 22 23248691 23248691 C T IGLC3 Nonsense_Mutation p.Q61* 0.14 TCGA-D8-A27M-01 22 42564676 42564676 G T TCF20 Missense_Mutation p.Q1956K 0.29 probably_damaging(0.966) TCGA-D8-A27M-01 22 45802482 45802482 G A SMC1B Silent p.I158I 0.15 TCGA-D8-A27M-01 2 109086705 109086705 C A GCC2 Nonsense_Mutation p.S307* 0.23 TCGA-D8-A27M-01 2 121740346 121740346 C A GLI2 Silent p.R525R 0.20 TCGA-D8-A27M-01 2 132288293 132288293 G C CCDC74A Missense_Mutation p.G146A 0.14 tolerated(0.22) benign(0.028) TCGA-D8-A27M-01 2 149868144 149868144 G T KIF5C Missense_Mutation p.R943L 0.23 deleterious(0.03) benign(0.052) TCGA-D8-A27M-01 2 179477304 179477304 C G TTN Splice_Site p.X16650_splice 0.24 TCGA-D8-A27M-01 2 187626600 187626600 G T FAM171B Nonsense_Mutation p.E511* 0.36 TCGA-D8-A27M-01 2 242168842 242168842 C A HDLBP 3'UTR 0.31 TCGA-D8-A27M-01 3 128994135 128994135 G T COPG1 Missense_Mutation p.G832C 0.18 deleterious(0) probably_damaging(1) TCGA-D8-A27M-01 3 142102248 142102248 C T XRN1 Missense_Mutation p.R837Q 0.28 tolerated(0.23) benign(0.001) TCGA-D8-A27M-01 4 106155407 106155407 T G TET2 Missense_Mutation p.L103R 0.26 deleterious(0) probably_damaging(0.982) TCGA-D8-A27M-01 4 106155408 106155408 C A TET2 Silent p.L103L 0.26 TCGA-D8-A27M-01 4 122682813 122682813 G A TMEM155 Missense_Mutation p.A31V 0.18 tolerated(1) benign(0.001) TCGA-D8-A27M-01 4 68725377 68725377 T C TMPRSS11D Missense_Mutation p.T10A 0.16 tolerated(0.91) benign(0.001) TCGA-D8-A27M-01 5 100147801 100147801 C G ST8SIA4 Missense_Mutation p.R277T 0.27 possibly_damaging(0.478) TCGA-D8-A27M-01 5 171533635 171533635 C T STK10 Silent p.T259T 0.36 TCGA-D8-A27M-01 5 61642964 61642964 A G KIF2A Missense_Mutation p.I24M 0.33 deleterious(0) probably_damaging(0.999) TCGA-D8-A27M-01 6 157528666 157528666 T A ARID1B Missense_Mutation p.S2131T 0.23 probably_damaging(0.981) TCGA-D8-A27M-01 6 28056440 28056440 C T ZNF165 Missense_Mutation p.S217L 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-D8-A27M-01 6 29692856 29692856 C T HLA-F Missense_Mutation p.A220V 0.32 tolerated_low_confidence(0.68) probably_damaging(0.912) TCGA-D8-A27M-01 6 33371565 33371565 T C KIFC1 Silent p.L139L 0.32 TCGA-D8-A27M-01 6 39507890 39507890 G A KIF6 Missense_Mutation p.R512C 0.26 tolerated(0.09) benign(0.005) TCGA-D8-A27M-01 7 100486576 100486576 G T UFSP1 Missense_Mutation p.A106D 0.22 tolerated(0.62) benign(0.385) TCGA-D8-A27M-01 7 150174426 150174426 C G GIMAP8 Missense_Mutation p.S519C 0.06 deleterious(0.01) probably_damaging(0.964) TCGA-D8-A27M-01 7 44104994 44104994 G C PGAM2 Missense_Mutation p.I45M 0.11 deleterious(0.04) possibly_damaging(0.602) TCGA-D8-A27M-01 7 54610496 54610497 TC - VSTM2A Frame_Shift_Del p.Q26Sfs*81 0.25 TCGA-D8-A27M-01 7 87037370 87037370 G T ABCB4 Missense_Mutation p.P1088T 0.28 deleterious(0.03) possibly_damaging(0.764) TCGA-D8-A27M-01 8 110355891 110355891 T G ENY2 3'UTR 0.23 TCGA-D8-A27M-01 8 124221764 124221764 G A FAM83A 3'UTR 0.35 TCGA-D8-A27M-01 8 144943054 144943054 G A EPPK1 Silent p.P1456P 0.19 TCGA-D8-A27M-01 8 51415387 51415387 T C SNTG1 Missense_Mutation p.F138S 0.10 deleterious(0) possibly_damaging(0.76) TCGA-D8-A27M-01 8 6669164 6669182 CTCTGCTGTCCTTCCCCTC AT XKR5 RNA 0.08 TCGA-D8-A27M-01 9 118982292 118982292 C A PAPPA Silent p.G665G 0.17 TCGA-D8-A27M-01 9 130869313 130869313 C G SLC25A25 Silent p.L394L 0.12 TCGA-D8-A27M-01 9 131367318 131367318 C G SPTAN1 Missense_Mutation p.A1242G 0.20 deleterious(0) probably_damaging(0.958) TCGA-D8-A27M-01 9 139313014 139313014 A C PMPCA Missense_Mutation p.D333A 0.17 deleterious(0) probably_damaging(0.987) TCGA-D8-A27M-01 9 140138642 140138642 G C FAM166A Missense_Mutation p.F282L 0.12 deleterious(0.05) probably_damaging(0.99) TCGA-D8-A27M-01 9 35906376 35906376 G T HRCT1 Missense_Mutation p.C31F 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D8-A27M-01 9 390476 390476 C T DOCK8 Silent p.F960F 0.13 TCGA-D8-A27M-01 9 84531130 84531130 C G SPATA31D5P RNA 0.17 TCGA-D8-A27M-01 X 102339302 102339302 C G NXF3 Missense_Mutation p.D107H 0.10 deleterious(0.04) benign(0.337) TCGA-D8-A27M-01 X 134426226 134426226 G T ZNF75D Silent p.T195T 0.14 TCGA-D8-A27M-01 X 15540536 15540536 A C BMX Missense_Mutation p.Q193P 0.08 tolerated(0.29) benign(0.002) TCGA-D8-A27M-01 X 2761348 2761348 G A GYG2 Silent p.T65T 0.10 TCGA-D8-A27M-01 X 46322698 46322698 G C KRBOX4 Missense_Mutation p.D70H 0.06 tolerated(0.05) benign(0.03) TCGA-D8-A27M-01 X 47774912 47774912 C A ZNF81 Missense_Mutation p.F289L 0.21 tolerated(1) benign(0) TCGA-D8-A27M-01 X 51644708 51644708 C T MAGED1 Silent p.A729A 0.08 TCGA-D8-A27N-01 10 116710886 116710886 C T TRUB1 Missense_Mutation p.T140I 0.31 tolerated(0.11) possibly_damaging(0.53) TCGA-D8-A27N-01 11 4703136 4703136 G T OR51E2 Missense_Mutation p.P269H 0.27 tolerated(0.49) probably_damaging(1) TCGA-D8-A27N-01 11 57003529 57003529 C T APLNR Missense_Mutation p.R317H 0.62 deleterious(0) probably_damaging(0.999) TCGA-D8-A27N-01 11 64338508 64338508 G A SLC22A11 Silent p.S549S 0.20 TCGA-D8-A27N-01 11 71821527 71821527 A T LRTOMT 3'UTR 0.54 TCGA-D8-A27N-01 11 82877694 82877694 A G PCF11 Silent p.V585V 0.88 TCGA-D8-A27N-01 12 53895219 53895219 C T TARBP2 Silent p.G9G 0.27 TCGA-D8-A27N-01 12 57065615 57065615 C G PTGES3 Missense_Mutation p.R68T 0.27 deleterious(0.04) probably_damaging(0.932) TCGA-D8-A27N-01 14 64687206 64687212 GTGAGCA - SYNE2 Frame_Shift_Del p.V6638Afs*22 0.33 TCGA-D8-A27N-01 15 41060225 41060225 G A DNAJC17 Silent p.L276L 0.30 TCGA-D8-A27N-01 15 44180393 44180393 G A FRMD5 Silent p.I288I 0.05 TCGA-D8-A27N-01 15 51973945 51973945 G A SCG3 5'UTR 0.28 TCGA-D8-A27N-01 15 73615671 73615671 G A HCN4 Silent p.S921S 0.28 TCGA-D8-A27N-01 16 48303976 48303976 C T LONP2 Silent p.Y344Y 0.25 TCGA-D8-A27N-01 16 69997501 69997501 G T CLEC18A Missense_Mutation p.G443V 0.16 deleterious_low_confidence(0) benign(0.051) TCGA-D8-A27N-01 17 36734839 36734839 G A SRCIN1 Silent p.A76A 0.06 TCGA-D8-A27N-01 17 37792208 37792208 C T PPP1R1B 3'UTR 0.69 TCGA-D8-A27N-01 17 48191567 48191567 G A SAMD14 Missense_Mutation p.S337F 0.72 deleterious(0) probably_damaging(0.999) TCGA-D8-A27N-01 17 57775130 57775130 C A PTRH2 Silent p.V70V 0.45 TCGA-D8-A27N-01 17 61958411 61958411 C A GH2 Missense_Mutation p.R90M 0.21 tolerated(0.27) benign(0.036) TCGA-D8-A27N-01 17 72951961 72951961 G A HID1 Missense_Mutation p.S521F 0.21 deleterious(0) probably_damaging(0.988) TCGA-D8-A27N-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.74 tolerated(0.11) benign(0.308) TCGA-D8-A27N-01 17 80040021 80040021 C T FASN Silent p.A2009A 0.35 TCGA-D8-A27N-01 18 65178341 65178341 G C DSEL Missense_Mutation p.P1179A 0.34 tolerated(0.36) benign(0.065) TCGA-D8-A27N-01 18 674341 674341 T A ENOSF1 Missense_Mutation p.E439D 0.11 tolerated(0.37) benign(0) TCGA-D8-A27N-01 19 10169599 10169599 C T C3P1 RNA 0.20 TCGA-D8-A27N-01 19 19390149 19390149 G T SUGP1 Missense_Mutation p.D467E 0.28 tolerated(1) benign(0.003) TCGA-D8-A27N-01 19 41114402 41114402 C T LTBP4 Missense_Mutation p.T507I 0.11 tolerated(0.07) benign(0.005) TCGA-D8-A27N-01 19 51379975 51379975 T C KLK2 Missense_Mutation p.C152R 0.13 deleterious(0) probably_damaging(1) TCGA-D8-A27N-01 19 55399502 55399502 C A FCAR Missense_Mutation p.L164I 0.41 tolerated(0.6) benign(0.082) TCGA-D8-A27N-01 1 176564549 176564549 A G PAPPA2 Silent p.P603P 0.07 TCGA-D8-A27N-01 1 196952137 196952137 T G CFHR5 Missense_Mutation p.S61A 0.18 deleterious(0.01) possibly_damaging(0.484) TCGA-D8-A27N-01 1 27176930 27176930 G A ZDHHC18 Splice_Site p.X262_splice 0.25 TCGA-D8-A27N-01 1 33138484 33138484 C T RBBP4 Silent p.I398I 0.32 TCGA-D8-A27N-01 1 53676854 53676854 G A CPT2 Missense_Mutation p.R503H 0.32 deleterious(0) possibly_damaging(0.889) TCGA-D8-A27N-01 1 67891834 67891834 C T SERBP1 Missense_Mutation p.E150K 0.34 tolerated(0.21) possibly_damaging(0.629) TCGA-D8-A27N-01 22 19708187 19708187 C T SEPT5 Missense_Mutation p.R205W 0.27 deleterious(0) probably_damaging(0.938) TCGA-D8-A27N-01 22 30775551 30775551 G A RNF215 3'UTR 0.15 TCGA-D8-A27N-01 22 36684952 36684952 C A MYH9 Nonsense_Mutation p.E1531* 0.34 TCGA-D8-A27N-01 22 38273806 38273808 GCA - EIF3L In_Frame_Del p.Q402del 0.47 TCGA-D8-A27N-01 2 166848766 166848766 G A SCN1A Silent p.I1673I 0.05 TCGA-D8-A27N-01 2 233164783 233164783 G A DIS3L2 Missense_Mutation p.G565R 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-D8-A27N-01 2 44071747 44071747 G A ABCG8 Silent p.Q55Q 0.46 TCGA-D8-A27N-01 3 133497563 133497563 C T TF 3'UTR 0.33 TCGA-D8-A27N-01 3 171455363 171455363 C T PLD1 Missense_Mutation p.A83T 0.23 deleterious(0.04) benign(0.4) TCGA-D8-A27N-01 3 184570300 184570300 C G VPS8 Missense_Mutation p.P256A 0.49 deleterious(0.05) probably_damaging(0.972) TCGA-D8-A27N-01 3 194790704 194790704 G A XXYLT1 Missense_Mutation p.R308C 0.25 deleterious(0.01) possibly_damaging(0.606) TCGA-D8-A27N-01 4 151765872 151765872 T A LRBA Missense_Mutation p.R1467W 0.08 deleterious(0.01) benign(0.371) TCGA-D8-A27N-01 4 170912535 170912535 A T MFAP3L Missense_Mutation p.H408Q 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D8-A27N-01 5 136969761 136969762 TA - KLHL3 Frame_Shift_Del p.Y472Rfs*17 0.31 TCGA-D8-A27N-01 5 55178962 55178962 C T IL31RA Missense_Mutation p.A182V 0.20 tolerated(0.42) benign(0.013) TCGA-D8-A27N-01 6 10775644 10775644 T G MAK Missense_Mutation p.N505T 0.33 tolerated(0.62) benign(0.004) TCGA-D8-A27N-01 7 129664182 129664182 C A ZC3HC1 Missense_Mutation p.R314L 0.38 deleterious(0.01) probably_damaging(0.91) TCGA-D8-A27N-01 7 45004603 45004603 G T MYO1G Missense_Mutation p.Q823K 0.42 tolerated(1) probably_damaging(0.991) TCGA-D8-A27N-01 7 6175584 6175584 T A USP42 Splice_Site p.X185_splice 0.27 TCGA-D8-A27N-01 7 91682267 91682267 A C AKAP9 Missense_Mutation p.S1866R 0.20 possibly_damaging(0.603) TCGA-D8-A27N-01 8 110424512 110424512 C A PKHD1L1 Missense_Mutation p.Q702K 0.33 tolerated(0.41) benign(0.001) TCGA-D8-A27N-01 8 118147513 118147513 G A SLC30A8 5'Flank 0.33 TCGA-D8-A27N-01 8 65509378 65509378 T A CYP7B1 Nonsense_Mutation p.K448* 0.38 TCGA-D8-A27N-01 9 119115961 119115961 T A PAPPA Silent p.P1412P 0.32 TCGA-D8-A27N-01 9 2648254 2648254 G A VLDLR Missense_Mutation p.M623I 0.40 tolerated(0.21) benign(0.314) TCGA-D8-A27N-01 X 48650324 48650324 C T GATA1 Silent p.Y98Y 0.33 TCGA-D8-A27N-01 X 71360164 71360164 G A NHSL2 Silent p.T922T 0.29 TCGA-D8-A27P-01 10 96018782 96018782 G A PLCE1 Missense_Mutation p.R1230H 0.19 deleterious(0) probably_damaging(0.999) TCGA-D8-A27P-01 11 71726685 71726685 G A NUMA1 Nonsense_Mutation p.Q622* 0.17 TCGA-D8-A27P-01 12 120760099 120760099 G T PLA2G1B Missense_Mutation p.A115D 0.38 tolerated(0.22) benign(0.056) TCGA-D8-A27P-01 12 6882468 6882468 C T LAG3 Nonsense_Mutation p.R57* 0.27 TCGA-D8-A27P-01 13 72440467 72440467 A G DACH1 Silent p.S147S 0.12 TCGA-D8-A27P-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.32 deleterious(0) probably_damaging(0.999) TCGA-D8-A27P-01 14 52735144 52735144 C T PTGDR Silent p.S204S 0.47 TCGA-D8-A27P-01 17 35614622 35614622 C T ACACA Intron 0.33 TCGA-D8-A27P-01 17 74041393 74041393 A T SRP68 Silent p.T458T 0.29 TCGA-D8-A27P-01 18 29055684 29055684 G T DSG3 Missense_Mutation p.A821S 0.36 tolerated(0.2) benign(0.139) TCGA-D8-A27P-01 18 70526127 70526127 T C NETO1 Missense_Mutation p.I135V 0.20 tolerated(0.15) possibly_damaging(0.607) TCGA-D8-A27P-01 1 236908040 236908040 G A ACTN2 Missense_Mutation p.R457H 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A27P-01 1 248569363 248569363 A G OR2T1 Missense_Mutation p.N23S 0.17 deleterious_low_confidence(0.03) benign(0.036) TCGA-D8-A27P-01 1 39775287 39775287 G A MACF1 Silent p.L950L 0.42 TCGA-D8-A27P-01 20 42965927 42965927 C T R3HDML Silent p.L44L 0.27 TCGA-D8-A27P-01 22 50304162 50304162 A T ALG12 Missense_Mutation p.F130Y 0.21 possibly_damaging(0.833) TCGA-D8-A27P-01 2 165947251 165947251 C T SCN3A Silent p.A1804A 0.25 TCGA-D8-A27P-01 2 48049368 48049368 T C FBXO11 Missense_Mutation p.N564S 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-D8-A27P-01 3 15531117 15531117 C T COLQ Missense_Mutation p.R45H 0.21 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-D8-A27P-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.30 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A27P-01 5 140711227 140711227 G C PCDHGA1 Missense_Mutation p.G326R 0.23 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D8-A27P-01 5 176637903 176637903 G T NSD1 Missense_Mutation p.G835C 0.26 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-D8-A27P-01 6 90642333 90642333 C T BACH2 Missense_Mutation p.A774T 0.07 tolerated(0.61) benign(0.001) TCGA-D8-A27P-01 6 9903615 9903615 C T OFCC1 Intron 0.06 TCGA-D8-A27P-01 7 150698507 150698507 C T NOS3 Silent p.R474R 0.40 TCGA-D8-A27P-01 7 152012425 152012425 T G KMT2C Splice_Site p.X130_splice 0.26 TCGA-D8-A27P-01 7 73471003 73471003 C T ELN Silent p.P439P 0.25 TCGA-D8-A27P-01 9 129641675 129641675 C T ZBTB34 5'UTR 0.37 TCGA-D8-A27P-01 X 47073947 47073947 A G UBA1 Silent p.K984K 0.28 TCGA-D8-A27P-01 X 53561598 53561598 C T HUWE1 Missense_Mutation p.R4237H 0.19 unknown(0) TCGA-D8-A27R-01 10 61028447 61028447 G A FAM13C Missense_Mutation p.R270W 0.12 deleterious(0) probably_damaging(1) TCGA-D8-A27R-01 10 882385 882385 G T LARP4B Nonsense_Mutation p.C236* 0.29 TCGA-D8-A27R-01 11 64030194 64030194 G A PLCB3 Missense_Mutation p.D757N 0.19 deleterious(0) probably_damaging(0.998) TCGA-D8-A27R-01 11 67132963 67132963 C T CLCF1 Missense_Mutation p.E108K 0.15 tolerated(0.98) benign(0.066) TCGA-D8-A27R-01 12 95911800 95911800 A T USP44 3'UTR 0.56 TCGA-D8-A27R-01 13 109707832 109707832 T C MYO16 Missense_Mutation p.F1053S 0.08 deleterious(0) probably_damaging(1) TCGA-D8-A27R-01 13 113439470 113439470 G A ATP11A Missense_Mutation p.V21M 0.09 deleterious(0) possibly_damaging(0.819) TCGA-D8-A27R-01 14 39870722 39870722 C T FBXO33 Missense_Mutation p.D352N 0.32 deleterious(0.02) benign(0.005) TCGA-D8-A27R-01 15 28359787 28359787 C T HERC2 Silent p.A4628A 0.05 TCGA-D8-A27R-01 15 45884474 45884474 C G BLOC1S6 Missense_Mutation p.T75R 0.20 deleterious(0.02) benign(0.287) TCGA-D8-A27R-01 17 27822714 27822714 G C TAOK1 Missense_Mutation p.G323A 0.15 tolerated(0.06) possibly_damaging(0.53) TCGA-D8-A27R-01 18 48190626 48190626 G A MAPK4 Missense_Mutation p.V100M 0.28 tolerated(0.22) benign(0.086) TCGA-D8-A27R-01 19 41743948 41743948 C T AXL Missense_Mutation p.R295W 0.46 tolerated(0.17) possibly_damaging(0.773) TCGA-D8-A27R-01 1 220170582 220170582 C T EPRS Missense_Mutation p.D762N 0.16 tolerated(0.34) possibly_damaging(0.521) TCGA-D8-A27R-01 1 27099042 27099042 C - ARID1A Frame_Shift_Del p.M1154Wfs*7 0.25 TCGA-D8-A27R-01 22 50563962 50563962 C T MOV10L1 Missense_Mutation p.P571S 0.17 deleterious(0) probably_damaging(0.979) TCGA-D8-A27R-01 2 108487890 108487890 C G RGPD4 Missense_Mutation p.L1144V 0.32 tolerated(0.44) probably_damaging(0.99) TCGA-D8-A27R-01 2 191236038 191236038 A G INPP1 Silent p.G370G 0.15 TCGA-D8-A27R-01 2 49189922 49189922 T A FSHR Missense_Mutation p.S680C 0.06 deleterious(0.04) possibly_damaging(0.451) TCGA-D8-A27R-01 3 111427014 111427014 T G PLCXD2 Missense_Mutation p.F135L 0.12 deleterious(0.01) possibly_damaging(0.78) TCGA-D8-A27R-01 4 100871377 100871377 G C H2AFZ 5'UTR 0.15 TCGA-D8-A27R-01 4 123254965 123254965 G T KIAA1109 Splice_Site p.X3882_splice 0.34 TCGA-D8-A27R-01 4 166999053 166999053 A T TLL1 Splice_Site p.X772_splice 0.20 TCGA-D8-A27R-01 4 99997614 99997614 C G ADH5 Silent p.R218R 0.09 TCGA-D8-A27R-01 5 102894609 102894609 G A NUDT12 Missense_Mutation p.A256V 0.08 tolerated(0.2) probably_damaging(0.962) TCGA-D8-A27R-01 5 140348477 140348477 T C PCDHAC2 Missense_Mutation p.I709T 0.41 deleterious(0.01) benign(0.347) TCGA-D8-A27R-01 5 40853931 40853931 C A CARD6 Missense_Mutation p.P833T 0.18 tolerated(0.31) benign(0.025) TCGA-D8-A27R-01 6 50805713 50805713 T G TFAP2B Missense_Mutation p.S283A 0.12 tolerated(0.08) benign(0.042) TCGA-D8-A27R-01 6 78172317 78172317 G C HTR1B Silent p.T268T 0.24 TCGA-D8-A27R-01 7 150218030 150218030 C T GIMAP7 3'UTR 0.18 TCGA-D8-A27R-01 7 91641818 91641818 C T AKAP9 Missense_Mutation p.R1132C 0.18 probably_damaging(0.998) TCGA-D8-A27R-01 8 95541520 95541520 G A KIAA1429 Missense_Mutation p.P220S 0.09 deleterious(0.03) possibly_damaging(0.591) TCGA-D8-A27R-01 9 119460253 119460253 G C TRIM32 Missense_Mutation p.D78H 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A27R-01 9 119461101 119461101 G C TRIM32 Missense_Mutation p.K360N 0.12 deleterious(0.02) benign(0.444) TCGA-D8-A27R-01 X 153043430 153043430 C T PLXNB3 Silent p.A1786A 0.13 TCGA-D8-A27R-01 X 3235330 3235330 G A MXRA5 Missense_Mutation p.A2131V 0.70 deleterious(0.03) probably_damaging(0.989) TCGA-D8-A27T-01 11 626464 626464 G A SCT Silent p.G111G 0.32 TCGA-D8-A27T-01 11 66102467 66102467 G C RIN1 Missense_Mutation p.P268R 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-D8-A27T-01 11 67260513 67260513 G A PITPNM1 Silent p.A1121A 0.23 TCGA-D8-A27T-01 13 20580517 20580517 C T ZMYM2 Missense_Mutation p.R435C 0.35 deleterious(0) probably_damaging(0.999) TCGA-D8-A27T-01 13 67802512 67802512 C T PCDH9 Missense_Mutation p.A21T 0.10 tolerated(0.1) benign(0.004) TCGA-D8-A27T-01 14 53247396 53247396 C A GNPNAT1 Splice_Site p.X136_splice 0.27 TCGA-D8-A27T-01 16 68846166 68846166 G A CDH1 Silent p.T379T 0.52 TCGA-D8-A27T-01 17 34893531 34893531 C A PIGW Missense_Mutation p.S194Y 0.09 tolerated(0.38) possibly_damaging(0.634) TCGA-D8-A27T-01 18 63477101 63477101 G A CDH7 Silent p.A124A 0.44 TCGA-D8-A27T-01 19 54682425 54682425 G A MBOAT7 Intron 0.32 TCGA-D8-A27T-01 1 1341141 1341141 T G MRPL20 Intron 0.31 TCGA-D8-A27T-01 1 17597589 17597589 T C PADI3 Silent p.D321D 0.38 TCGA-D8-A27T-01 1 236341813 236341813 G T GPR137B Missense_Mutation p.K188N 0.27 tolerated(0.31) benign(0.005) TCGA-D8-A27T-01 20 31611227 31611227 G A BPIFB2 3'UTR 0.22 TCGA-D8-A27T-01 21 19770556 19770556 G A TMPRSS15 Missense_Mutation p.S79L 0.31 deleterious(0) probably_damaging(0.973) TCGA-D8-A27T-01 22 33255330 33255330 C A TIMP3 Missense_Mutation p.P201Q 0.67 deleterious(0.01) possibly_damaging(0.687) TCGA-D8-A27T-01 2 166223736 166223736 G A SCN2A Missense_Mutation p.R1177Q 0.29 tolerated(0.43) benign(0.004) TCGA-D8-A27T-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-D8-A27T-01 3 196754653 196754653 C G MFI2 Missense_Mutation p.A60P 0.73 tolerated(0.2) benign(0.087) TCGA-D8-A27T-01 3 3131894 3131894 G A IL5RA Intron 0.28 TCGA-D8-A27T-01 3 52727242 52727242 C T GNL3 Silent p.L362L 0.21 TCGA-D8-A27T-01 4 39114838 39114838 A G KLHL5 Silent p.S675S 0.17 TCGA-D8-A27T-01 5 140188443 140188443 C T PCDHA4 Silent p.D557D 0.30 TCGA-D8-A27T-01 6 24533771 24533771 G A ALDH5A1 Missense_Mutation p.R493K 0.05 deleterious(0.03) probably_damaging(0.997) TCGA-D8-A27T-01 6 31832672 31832674 AAG - SLC44A4 In_Frame_Del p.F618del 0.58 TCGA-D8-A27T-01 7 157959701 157959701 G T PTPRN2 Missense_Mutation p.P278T 0.33 tolerated(0.17) benign(0.053) TCGA-D8-A27T-01 7 65445321 65445321 C T GUSB Missense_Mutation p.V96I 0.24 tolerated(0.59) benign(0.031) TCGA-D8-A27T-01 7 99757738 99757738 C T GAL3ST4 Missense_Mutation p.R425H 0.26 deleterious(0) probably_damaging(0.995) TCGA-D8-A27T-01 9 140707938 140707938 G A EHMT1 Missense_Mutation p.V1046M 0.45 tolerated(0.1) probably_damaging(0.988) TCGA-D8-A27T-01 9 6330045 6330045 A G TPD52L3 3'UTR 0.41 TCGA-D8-A27T-01 X 101858272 101858272 C T ARMCX5 Silent p.I401I 0.35 TCGA-D8-A27T-01 X 77378415 77378415 T C PGK1 Missense_Mutation p.F242S 0.36 deleterious(0.01) possibly_damaging(0.517) TCGA-D8-A27V-01 10 100995387 100995387 T - HPSE2 Frame_Shift_Del p.K58Rfs*3 0.13 TCGA-D8-A27V-01 10 101503007 101503007 G - CUTC Frame_Shift_Del p.V98* 0.12 TCGA-D8-A27V-01 10 101503060 101503060 T - CUTC Frame_Shift_Del p.F116Lfs*4 0.08 TCGA-D8-A27V-01 10 101961887 101961887 T - CHUK Frame_Shift_Del p.A510Hfs*47 0.08 TCGA-D8-A27V-01 10 102267737 102267737 G - SEC31B Frame_Shift_Del p.S190Vfs*36 0.08 TCGA-D8-A27V-01 10 102584439 102584439 C - PAX2 Frame_Shift_Del p.P343Lfs*50 0.13 TCGA-D8-A27V-01 10 103541541 103541541 A - NPM3 Frame_Shift_Del p.E164Sfs*75 0.11 TCGA-D8-A27V-01 10 103869698 103869698 G - LDB1 Frame_Shift_Del p.R210Afs*38 0.13 TCGA-D8-A27V-01 10 103987403 103987403 C - ELOVL3 Frame_Shift_Del p.L42* 0.11 TCGA-D8-A27V-01 10 104629888 104629888 C G AS3MT Missense_Mutation p.N30K 0.32 deleterious(0.03) benign(0.211) TCGA-D8-A27V-01 10 104634363 104634363 T - AS3MT Frame_Shift_Del p.N159Tfs*17 0.10 TCGA-D8-A27V-01 10 105822083 105822083 A - COL17A1 Frame_Shift_Del p.F281Lfs*11 0.09 TCGA-D8-A27V-01 10 105891198 105891198 T - WDR96 Frame_Shift_Del p.K1574Nfs*11 0.10 TCGA-D8-A27V-01 10 105893506 105893506 T - WDR96 Frame_Shift_Del p.S1490Vfs*25 0.09 TCGA-D8-A27V-01 10 105942160 105942160 T - WDR96 Frame_Shift_Del p.V752Ffs*3 0.11 TCGA-D8-A27V-01 10 1087147 1087147 C T IDI1 Missense_Mutation p.E279K 0.39 tolerated(0.29) benign(0.01) TCGA-D8-A27V-01 10 114136024 114136024 A - ACSL5 5'UTR 0.16 TCGA-D8-A27V-01 10 115356888 115356888 G - NRAP Frame_Shift_Del p.P1463Qfs*31 0.09 TCGA-D8-A27V-01 10 115412772 115412772 G - NRAP Frame_Shift_Del p.R165Gfs*9 0.09 TCGA-D8-A27V-01 10 115594978 115594978 C - DCLRE1A Frame_Shift_Del p.G1019Afs*48 0.09 TCGA-D8-A27V-01 10 115897005 115897005 T - C10orf118 Frame_Shift_Del p.A423Qfs*15 0.10 TCGA-D8-A27V-01 10 116059080 116059080 C - AFAP1L2 Frame_Shift_Del p.H685Tfs*12 0.08 TCGA-D8-A27V-01 10 118464780 118464780 C T HSPA12A Missense_Mutation p.D46N 0.22 tolerated_low_confidence(0.07) benign(0.062) TCGA-D8-A27V-01 10 118728182 118728182 T - KIAA1598 Frame_Shift_Del p.K51Nfs*13 0.10 TCGA-D8-A27V-01 10 118957038 118957038 C - KCNK18 Frame_Shift_Del p.P14Qfs*18 0.10 TCGA-D8-A27V-01 10 119798780 119798780 T - RAB11FIP2 Frame_Shift_Del p.N323Ifs*14 0.08 TCGA-D8-A27V-01 10 119805431 119805431 G C RAB11FIP2 Missense_Mutation p.L82V 0.27 tolerated(0.06) probably_damaging(0.994) TCGA-D8-A27V-01 10 120802088 120802088 C - EIF3A Frame_Shift_Del p.A982Qfs*191 0.11 TCGA-D8-A27V-01 10 120810054 120810054 C - EIF3A Frame_Shift_Del p.A818Qfs*6 0.10 TCGA-D8-A27V-01 10 120810076 120810076 T - EIF3A Frame_Shift_Del p.E811Kfs*13 0.08 TCGA-D8-A27V-01 10 120817696 120817696 C G EIF3A Missense_Mutation p.E583D 0.27 deleterious(0.01) unknown(0) TCGA-D8-A27V-01 10 12203016 12203016 T - SEC61A2 Frame_Shift_Del p.F355Lfs*36 0.08 TCGA-D8-A27V-01 10 123325099 123325099 C - FGFR2 Frame_Shift_Del p.V77Cfs*18 0.10 TCGA-D8-A27V-01 10 124088996 124088996 T - BTBD16 Frame_Shift_Del p.P306Lfs*11 0.11 TCGA-D8-A27V-01 10 124214415 124214415 A - ARMS2 Frame_Shift_Del p.K58Nfs*8 0.08 TCGA-D8-A27V-01 10 124350201 124350201 C - DMBT1 Frame_Shift_Del p.R711Gfs*15 0.08 TCGA-D8-A27V-01 10 124395670 124395670 G - DMBT1 Frame_Shift_Del p.F2110Sfs*27 0.12 TCGA-D8-A27V-01 10 124399860 124399860 A - DMBT1 Frame_Shift_Del p.I2288Sfs*8 0.12 TCGA-D8-A27V-01 10 124810641 124810641 T - ACADSB Frame_Shift_Del p.L357* 0.09 TCGA-D8-A27V-01 10 126523208 126523208 C - FAM175B Frame_Shift_Del p.P307Lfs*14 0.16 TCGA-D8-A27V-01 10 127483521 127483521 A - UROS Frame_Shift_Del p.F196Lfs*44 0.09 TCGA-D8-A27V-01 10 127542585 127542585 A - DHX32 Frame_Shift_Del p.L346* 0.08 TCGA-D8-A27V-01 10 127705830 127705830 A - ADAM12 3'UTR 0.11 TCGA-D8-A27V-01 10 128118387 128118387 A - C10orf90 Frame_Shift_Del p.S644Qfs*30 0.08 TCGA-D8-A27V-01 10 12867643 12867643 A - CAMK1D Frame_Shift_Del p.N332Mfs*46 0.09 TCGA-D8-A27V-01 10 128836036 128836036 A - DOCK1 Frame_Shift_Del p.N635Tfs*2 0.08 TCGA-D8-A27V-01 10 129152961 129152961 T - DOCK1 Frame_Shift_Del p.F1064Lfs*15 0.09 TCGA-D8-A27V-01 10 129868042 129868042 A - PTPRE Frame_Shift_Del p.E365Dfs*69 0.10 TCGA-D8-A27V-01 10 129904785 129904785 T - MKI67 Frame_Shift_Del p.K1773Nfs*17 0.08 TCGA-D8-A27V-01 10 129907030 129907030 A - MKI67 Frame_Shift_Del p.L1025* 0.11 TCGA-D8-A27V-01 10 13154529 13154529 G - OPTN Frame_Shift_Del p.R149Sfs*20 0.09 TCGA-D8-A27V-01 10 131761655 131761655 A - EBF3 Frame_Shift_Del p.F89Lfs*43 0.13 TCGA-D8-A27V-01 10 13361245 13361245 T - SEPHS1 Frame_Shift_Del p.K359Rfs*9 0.08 TCGA-D8-A27V-01 10 133963527 133963527 G - JAKMIP3 Frame_Shift_Del p.G664Afs*6 0.09 TCGA-D8-A27V-01 10 134016253 134016253 C - DPYSL4 Frame_Shift_Del p.P463Rfs*44 0.09 TCGA-D8-A27V-01 10 134022549 134022549 A - STK32C Frame_Shift_Del p.F436Lfs*6 0.11 TCGA-D8-A27V-01 10 134621931 134621931 C G TTC40 Missense_Mutation p.L2714F 0.23 deleterious_low_confidence(0) unknown(0) TCGA-D8-A27V-01 10 14861990 14861990 T - CDNF Frame_Shift_Del p.T185Qfs*? 0.09 TCGA-D8-A27V-01 10 15720739 15720739 A - ITGA8 Frame_Shift_Del p.F204Lfs*25 0.12 TCGA-D8-A27V-01 10 17061854 17061854 A - CUBN Frame_Shift_Del p.Q1383Rfs*80 0.09 TCGA-D8-A27V-01 10 17271647 17271647 G - VIM Frame_Shift_Del p.V77Cfs*34 0.11 TCGA-D8-A27V-01 10 17949646 17949646 C - MRC1L1 Frame_Shift_Del p.A1337Gfs*55 0.09 TCGA-D8-A27V-01 10 18828380 18828380 A - CACNB2 Frame_Shift_Del p.K571Rfs*71 0.14 TCGA-D8-A27V-01 10 20432294 20432294 A - PLXDC2 Frame_Shift_Del p.N205Ifs*65 0.10 TCGA-D8-A27V-01 10 21906109 21906109 G - MLLT10 Frame_Shift_Del p.D225Ifs*35 0.09 TCGA-D8-A27V-01 10 22690171 22690171 A - SPAG6 Frame_Shift_Del p.N427Ifs*3 0.09 TCGA-D8-A27V-01 10 27406562 27406562 T - YME1L1 Frame_Shift_Del p.D612Mfs*73 0.10 TCGA-D8-A27V-01 10 27454379 27454379 A - MASTL Frame_Shift_Del p.T242Hfs*14 0.08 TCGA-D8-A27V-01 10 27964248 27964248 T - MKX Frame_Shift_Del p.K323Nfs*16 0.09 TCGA-D8-A27V-01 10 286890 286890 A - ZMYND11 Frame_Shift_Del p.N271Tfs*18 0.10 TCGA-D8-A27V-01 10 28824543 28824543 A - WAC Frame_Shift_Del p.K45Rfs*147 0.12 TCGA-D8-A27V-01 10 29580880 29580880 A - LYZL1 Frame_Shift_Del p.I76Yfs*59 0.09 TCGA-D8-A27V-01 10 29762772 29762772 C - SVIL Frame_Shift_Del p.A1842Pfs*65 0.12 TCGA-D8-A27V-01 10 29788058 29788058 C - SVIL Frame_Shift_Del p.M1218Wfs*2 0.14 TCGA-D8-A27V-01 10 30915139 30915139 G - LYZL2 Frame_Shift_Del p.L111Wfs*24 0.11 TCGA-D8-A27V-01 10 3160983 3160983 G - PFKP Frame_Shift_Del p.K486Sfs*19 0.10 TCGA-D8-A27V-01 10 33469196 33469196 G - NRP1 Frame_Shift_Del p.I861Sfs*2 0.09 TCGA-D8-A27V-01 10 34420403 34420403 A - PARD3 Frame_Shift_Del p.F1179Lfs*120 0.09 TCGA-D8-A27V-01 10 35305184 35305184 T - CUL2 Frame_Shift_Del p.K627Rfs*3 0.10 TCGA-D8-A27V-01 10 35456644 35456644 T - CREM Intron 0.09 TCGA-D8-A27V-01 10 43613910 43613910 G - RET Frame_Shift_Del p.A793Pfs*76 0.13 TCGA-D8-A27V-01 10 43659423 43659423 T - CSGALNACT2 Frame_Shift_Del p.F365Sfs*18 0.10 TCGA-D8-A27V-01 10 43882375 43882375 C G HNRNPF Missense_Mutation p.E320Q 0.25 tolerated(0.17) probably_damaging(0.985) TCGA-D8-A27V-01 10 46250527 46250527 T - FAM21C Frame_Shift_Del p.F463Sfs*34 0.08 TCGA-D8-A27V-01 10 47087257 47087257 G - NPY4R Frame_Shift_Del p.I160Lfs*101 0.08 TCGA-D8-A27V-01 10 49654587 49654587 T - ARHGAP22 Frame_Shift_Del p.K664Nfs*7 0.09 TCGA-D8-A27V-01 10 49939350 49939350 C - WDFY4 Frame_Shift_Del p.P443Qfs*10 0.11 TCGA-D8-A27V-01 10 5032175 5032175 A - AKR1C2 3'UTR 0.08 TCGA-D8-A27V-01 10 51581370 51581370 A - NCOA4 Frame_Shift_Del p.T175Pfs*8 0.10 TCGA-D8-A27V-01 10 5248295 5248295 A - AKR1C4 Frame_Shift_Del p.N169Tfs*7 0.08 TCGA-D8-A27V-01 10 53458811 53458811 G - CSTF2T Frame_Shift_Del p.Q167Nfs*11 0.08 TCGA-D8-A27V-01 10 55591183 55591183 T - PCDH15 Frame_Shift_Del p.K1365Rfs*6 0.09 TCGA-D8-A27V-01 10 5784061 5784061 C - FAM208B Frame_Shift_Del p.W778Gfs*12 0.13 TCGA-D8-A27V-01 10 61802460 61802460 T - ANK3 Frame_Shift_Del p.S4375Afs*64 0.11 TCGA-D8-A27V-01 10 61932701 61932701 T - ANK3 Frame_Shift_Del p.N780Mfs*15 0.13 TCGA-D8-A27V-01 10 63957995 63957995 T - RTKN2 Frame_Shift_Del p.K501Rfs*16 0.09 TCGA-D8-A27V-01 10 6540415 6540415 A - PRKCQ Frame_Shift_Del p.F162Sfs*22 0.10 TCGA-D8-A27V-01 10 70098372 70098372 G - HNRNPH3 Frame_Shift_Del p.G123Vfs*48 0.12 TCGA-D8-A27V-01 10 70768643 70768643 T - KIAA1279 Frame_Shift_Del p.F280Lfs*31 0.10 TCGA-D8-A27V-01 10 71060618 71060618 G C HK1 Intron 0.22 TCGA-D8-A27V-01 10 71139739 71139739 T - HK1 Frame_Shift_Del p.L389Wfs*10 0.10 TCGA-D8-A27V-01 10 71392764 71392764 C - C10orf35 Frame_Shift_Del p.L106Sfs*13 0.08 TCGA-D8-A27V-01 10 71634883 71634883 G - COL13A1 Splice_Site p.X135_splice 0.10 TCGA-D8-A27V-01 10 72532282 72532282 T - TBATA Frame_Shift_Del p.S320Afs*36 0.10 TCGA-D8-A27V-01 10 73199653 73199653 G - CDH23 Frame_Shift_Del 0.08 TCGA-D8-A27V-01 10 73562822 73562822 C - CDH23 Frame_Shift_Del p.P311Lfs*15 0.09 TCGA-D8-A27V-01 10 74673080 74673080 A - OIT3 Frame_Shift_Del p.K269Nfs*7 0.13 TCGA-D8-A27V-01 10 75016142 75016142 G - TTC18 Frame_Shift_Del p.Y1090* 0.10 TCGA-D8-A27V-01 10 75147507 75147507 G - ANXA7 Frame_Shift_Del p.N214Tfs*22 0.09 TCGA-D8-A27V-01 10 75525244 75525244 C - SEC24C Frame_Shift_Del p.P422Lfs*69 0.10 TCGA-D8-A27V-01 10 75874030 75874030 G - VCL Frame_Shift_Del p.A1014Hfs*16 0.10 TCGA-D8-A27V-01 10 76789376 76789376 C - KAT6B Frame_Shift_Del p.P1599Qfs*51 0.09 TCGA-D8-A27V-01 10 7825048 7825048 A - KIN Frame_Shift_Del p.S69Qfs*9 0.12 TCGA-D8-A27V-01 10 8006138 8006138 A - TAF3 Frame_Shift_Del p.K223Rfs*41 0.11 TCGA-D8-A27V-01 10 8006776 8006776 A - TAF3 Frame_Shift_Del p.A436Lfs*86 0.10 TCGA-D8-A27V-01 10 81697886 81697886 C - SFTPD Frame_Shift_Del p.A284Lfs*22 0.11 TCGA-D8-A27V-01 10 82111751 82111751 T - DYDC1 Frame_Shift_Del p.K52Rfs*12 0.08 TCGA-D8-A27V-01 10 86131234 86131234 T - CCSER2 Frame_Shift_Del p.S144Lfs*15 0.08 TCGA-D8-A27V-01 10 88206144 88206144 T - WAPAL Frame_Shift_Del p.D1060Mfs*81 0.10 TCGA-D8-A27V-01 10 88417869 88417869 C - OPN4 Frame_Shift_Del p.P136Lfs*34 0.09 TCGA-D8-A27V-01 10 88419132 88419132 C - OPN4 Frame_Shift_Del p.M248Cfs*91 0.11 TCGA-D8-A27V-01 10 88784388 88784388 C - FAM25A Frame_Shift_Del p.I77Sfs*? 0.08 TCGA-D8-A27V-01 10 88784417 88784417 A - FAM25A Frame_Shift_Del p.K86Nfs*? 0.09 TCGA-D8-A27V-01 10 88784455 88784455 C - FAM25A 3'UTR 0.10 TCGA-D8-A27V-01 10 89725058 89725058 C A PTEN Missense_Mutation p.F347L 0.20 tolerated(0.13) probably_damaging(0.942) TCGA-D8-A27V-01 10 92680808 92680808 T - ANKRD1 5'UTR 0.12 TCGA-D8-A27V-01 10 93716365 93716365 C A BTAF1 Missense_Mutation p.S261Y 0.28 tolerated(0.09) benign(0.092) TCGA-D8-A27V-01 10 93726436 93726436 T - BTAF1 Frame_Shift_Del p.L526Cfs*66 0.12 TCGA-D8-A27V-01 10 95441283 95441283 T - FRA10AC1 Frame_Shift_Del p.K247Nfs*81 0.09 TCGA-D8-A27V-01 10 96534871 96534871 G - CYP2C19 Frame_Shift_Del p.V76Cfs*8 0.09 TCGA-D8-A27V-01 10 96540284 96540284 G - CYP2C19 Frame_Shift_Del p.G171Afs*7 0.08 TCGA-D8-A27V-01 10 96988479 96988479 G - C10orf129 Frame_Shift_Del p.G461Afs*28 0.11 TCGA-D8-A27V-01 10 96988546 96988546 T - C10orf129 3'UTR 0.08 TCGA-D8-A27V-01 10 97452731 97452731 T - TCTN3 Frame_Shift_Del p.R149Efs*16 0.08 TCGA-D8-A27V-01 10 98803206 98803206 G - SLIT1 Frame_Shift_Del p.R640Gfs*27 0.08 TCGA-D8-A27V-01 10 99019194 99019194 G - ARHGAP19 Frame_Shift_Del p.M270Cfs*24 0.11 TCGA-D8-A27V-01 10 99243859 99243859 C - MMS19 Splice_Site p.X54_splice 0.12 TCGA-D8-A27V-01 11 100221434 100221434 T - CNTN5 Frame_Shift_Del p.Y1013Ifs*20 0.10 TCGA-D8-A27V-01 11 1019282 1019282 G - MUC6 Frame_Shift_Del p.T1342Rfs*114 0.09 TCGA-D8-A27V-01 11 1019304 1019304 G - MUC6 Frame_Shift_Del p.P1334Qfs*122 0.13 TCGA-D8-A27V-01 11 1019320 1019320 T - MUC6 Frame_Shift_Del p.M1329* 0.08 TCGA-D8-A27V-01 11 1019406 1019406 G - MUC6 Frame_Shift_Del p.T1300Kfs*2 0.11 TCGA-D8-A27V-01 11 1019441 1019441 G - MUC6 Frame_Shift_Del p.T1289Qfs*4 0.11 TCGA-D8-A27V-01 11 102395767 102395767 C - MMP7 Frame_Shift_Del p.P172Qfs*33 0.11 TCGA-D8-A27V-01 11 103306688 103306688 G C DYNC2H1 Missense_Mutation p.Q4135H 0.38 benign(0.082) TCGA-D8-A27V-01 11 105836771 105836771 G - GRIA4 Intron 0.16 TCGA-D8-A27V-01 11 10647935 10647935 T - MRVI1 Frame_Shift_Del p.M316Wfs*3 0.11 TCGA-D8-A27V-01 11 107501426 107501426 A - ELMOD1 Frame_Shift_Del p.T56Hfs*3 0.10 TCGA-D8-A27V-01 11 10785262 10785262 T - CTR9 Frame_Shift_Del p.F345Lfs*24 0.08 TCGA-D8-A27V-01 11 109294557 109294557 C - C11orf87 Frame_Shift_Del p.L67Wfs*23 0.11 TCGA-D8-A27V-01 11 110494927 110494927 A - ARHGAP20 Frame_Shift_Del p.F154Lfs*8 0.12 TCGA-D8-A27V-01 11 112119521 112119521 T - PLET1 3'UTR 0.10 TCGA-D8-A27V-01 11 113133613 113133613 T - NCAM1 Intron 0.08 TCGA-D8-A27V-01 11 114453561 114453561 G - NXPE4 Frame_Shift_Del p.T94Pfs*30 0.09 TCGA-D8-A27V-01 11 116652935 116652935 C - ZNF259 Frame_Shift_Del p.G373Afs*27 0.10 TCGA-D8-A27V-01 11 117062690 117062690 C - SIDT2 Frame_Shift_Del p.C612Afs*125 0.09 TCGA-D8-A27V-01 11 117074993 117074993 T - TAGLN Frame_Shift_Del p.I175Mfs*16 0.10 TCGA-D8-A27V-01 11 117153189 117153189 G - RNF214 Frame_Shift_Del p.E595Nfs*65 0.16 TCGA-D8-A27V-01 11 118235848 118235848 T - UBE4A Frame_Shift_Del p.F19Lfs*18 0.09 TCGA-D8-A27V-01 11 118277759 118277759 A - ATP5L Frame_Shift_Del p.I56* 0.09 TCGA-D8-A27V-01 11 118778252 118778252 C - BCL9L Frame_Shift_Del p.D158Tfs*24 0.18 TCGA-D8-A27V-01 11 118888677 118888677 G - RPS25 Frame_Shift_Del p.K32Rfs*16 0.09 TCGA-D8-A27V-01 11 119064503 119064503 G - CCDC153 Frame_Shift_Del p.R77Efs*11 0.10 TCGA-D8-A27V-01 11 119205865 119205865 G - RNF26 Frame_Shift_Del p.G12Afs*7 0.15 TCGA-D8-A27V-01 11 119217213 119217213 A - MFRP Frame_Shift_Del p.F4Sfs*133 0.11 TCGA-D8-A27V-01 11 119227610 119227610 G - USP2 Frame_Shift_Del p.Q585Kfs*62 0.12 TCGA-D8-A27V-01 11 120198138 120198138 T - TMEM136 Frame_Shift_Del p.H20Ifs*6 0.08 TCGA-D8-A27V-01 11 120201213 120201213 A - TMEM136 Frame_Shift_Del p.I266Yfs*24 0.14 TCGA-D8-A27V-01 11 122848545 122848545 T - BSX Frame_Shift_Del p.S172Afs*31 0.11 TCGA-D8-A27V-01 11 123909452 123909452 G - OR10G7 Frame_Shift_Del p.P86Qfs*49 0.09 TCGA-D8-A27V-01 11 124761203 124761203 T - ROBO4 Frame_Shift_Del p.K647Rfs*27 0.09 TCGA-D8-A27V-01 11 125448053 125448053 T - EI24 Frame_Shift_Del p.W115Gfs*27 0.09 TCGA-D8-A27V-01 11 1264059 1264059 C - MUC5B Frame_Shift_Del p.S1985Lfs*106 0.08 TCGA-D8-A27V-01 11 1264584 1270026 11:1264584-1270026 - MUC5B large deletion p.P2160Qfs*3 0.10 TCGA-D8-A27V-01 11 1264814 1270256 11:1264814-1270256 - MUC5B large deletion p.H2236Tfs*71 0.09 TCGA-D8-A27V-01 11 1265021 1270463 11:1265021-1270463 - MUC5B large deletion p.I2306* 0.09 TCGA-D8-A27V-01 11 1265966 1269737 11:1265966-1269737 - MUC5B large deletion p.S2621Pfs*27 0.09 TCGA-D8-A27V-01 11 1266117 1269888 11:1266117-1269888 - MUC5B large deletion p.A2670Pfs*21 0.11 TCGA-D8-A27V-01 11 129772300 129772300 G - PRDM10 Frame_Shift_Del p.Q1131Rfs*37 0.09 TCGA-D8-A27V-01 11 129794867 129794867 A - PRDM10 Frame_Shift_Del p.D601Ifs*3 0.13 TCGA-D8-A27V-01 11 129801009 129801009 T - PRDM10 Frame_Shift_Del p.T478Lfs*21 0.12 TCGA-D8-A27V-01 11 131781378 131781378 G - NTM Frame_Shift_Del p.V3Sfs*43 0.11 TCGA-D8-A27V-01 11 16068171 16068171 C - SOX6 Frame_Shift_Del p.K505Rfs*25 0.12 TCGA-D8-A27V-01 11 16208395 16208395 T - SOX6 Frame_Shift_Del p.K214Nfs*55 0.14 TCGA-D8-A27V-01 11 17115913 17115913 A - PIK3C2A Frame_Shift_Del p.L1449* 0.10 TCGA-D8-A27V-01 11 17191033 17191033 T - PIK3C2A Frame_Shift_Del p.R86Efs*3 0.10 TCGA-D8-A27V-01 11 17424284 17424284 C - ABCC8 Frame_Shift_Del p.D1192Mfs*16 0.09 TCGA-D8-A27V-01 11 17450156 17450156 G - ABCC8 Frame_Shift_Del p.H627Mfs*20 0.09 TCGA-D8-A27V-01 11 1769153 1769153 G A RP11-295K3.1 Missense_Mutation p.S294L 0.53 tolerated_low_confidence(0.19) benign(0.029) TCGA-D8-A27V-01 11 18195260 18195260 T - MRGPRX4 Frame_Shift_Del p.F153Lfs*32 0.12 TCGA-D8-A27V-01 11 18267513 18267513 C - SAA2 Frame_Shift_Del p.N59Tfs*17 0.09 TCGA-D8-A27V-01 11 18741368 18741368 T - IGSF22 Frame_Shift_Del p.V198Cfs*28 0.09 TCGA-D8-A27V-01 11 1874395 1874395 C - LSP1 Frame_Shift_Del p.P8Rfs*60 0.12 TCGA-D8-A27V-01 11 22384314 22384314 C - SLC17A6 Frame_Shift_Del p.P231Lfs*2 0.09 TCGA-D8-A27V-01 11 22384359 22384359 T - SLC17A6 Frame_Shift_Del p.Y247Mfs*36 0.08 TCGA-D8-A27V-01 11 2549220 2549220 C - KCNQ1 Frame_Shift_Del p.L151Wfs*86 0.10 TCGA-D8-A27V-01 11 27378986 27378986 T - CCDC34 Frame_Shift_Del p.E155Kfs*8 0.09 TCGA-D8-A27V-01 11 27390366 27390366 A - LGR4 Frame_Shift_Del p.L635Yfs*2 0.09 TCGA-D8-A27V-01 11 27528284 27528284 C - LIN7C Frame_Shift_Del p.E6Nfs*45 0.08 TCGA-D8-A27V-01 11 27679864 27679864 T - BDNF Frame_Shift_Del p.N165Tfs*12 0.10 TCGA-D8-A27V-01 11 31815306 31815306 T - PAX6 Frame_Shift_Del p.K284Nfs*2 0.09 TCGA-D8-A27V-01 11 32410616 32410616 C - WT1 Frame_Shift_Del p.Q514Hfs*21 0.10 TCGA-D8-A27V-01 11 32417843 32417843 A - WT1 Frame_Shift_Del p.F403Lfs*46 0.10 TCGA-D8-A27V-01 11 32616533 32616533 T - EIF3M Frame_Shift_Del p.L232Wfs*10 0.08 TCGA-D8-A27V-01 11 34104578 34104578 A - CAPRIN1 Frame_Shift_Del p.T320Rfs*5 0.12 TCGA-D8-A27V-01 11 36296287 36296287 G - COMMD9 Frame_Shift_Del p.S165Pfs*9 0.09 TCGA-D8-A27V-01 11 36297743 36297743 T - COMMD9 Frame_Shift_Del p.T134Pfs*18 0.12 TCGA-D8-A27V-01 11 3690467 3690467 G - CHRNA10 Frame_Shift_Del p.S108Afs*51 0.23 TCGA-D8-A27V-01 11 3838684 3838684 T - PGAP2 Frame_Shift_Del p.P91Lfs*34 0.08 TCGA-D8-A27V-01 11 3845509 3845509 A - PGAP2 Frame_Shift_Del p.N205Mfs*23 0.11 TCGA-D8-A27V-01 11 4112909 4112909 C T STIM1 Silent p.L647L 0.27 TCGA-D8-A27V-01 11 4139655 4139655 G - RRM1 Frame_Shift_Del p.S253Vfs*24 0.08 TCGA-D8-A27V-01 11 44073214 44073214 A - ACCSL Frame_Shift_Del p.N240Mfs*43 0.10 TCGA-D8-A27V-01 11 4409628 4409628 C - TRIM21 Frame_Shift_Del p.E213Rfs*20 0.09 TCGA-D8-A27V-01 11 4567024 4567024 G - OR52M1 Frame_Shift_Del p.L203* 0.09 TCGA-D8-A27V-01 11 4598937 4598937 T - C11orf40 Frame_Shift_Del p.V39Lfs*4 0.08 TCGA-D8-A27V-01 11 4608867 4608867 G - OR52I2 Frame_Shift_Del p.V277Lfs*22 0.08 TCGA-D8-A27V-01 11 4626492 4626492 T - TRIM68 Frame_Shift_Del p.V82Sfs*4 0.13 TCGA-D8-A27V-01 11 46701325 46701325 C - ARHGAP1 Frame_Shift_Del p.L301Cfs*71 0.09 TCGA-D8-A27V-01 11 46724273 46724273 G - ZNF408 Frame_Shift_Del p.G118Efs*74 0.09 TCGA-D8-A27V-01 11 46791529 46791529 T - CKAP5 Frame_Shift_Del p.K1102Nfs*49 0.10 TCGA-D8-A27V-01 11 47176782 47176782 T - C11orf49 Frame_Shift_Del p.F141Lfs*32 0.08 TCGA-D8-A27V-01 11 47189526 47189526 C - ARFGAP2 Frame_Shift_Del p.G380Vfs*5 0.08 TCGA-D8-A27V-01 11 47193049 47193049 T - ARFGAP2 Frame_Shift_Del p.K290Rfs*37 0.08 TCGA-D8-A27V-01 11 47364253 47364253 T - MYBPC3 Frame_Shift_Del p.K500Nfs*13 0.11 TCGA-D8-A27V-01 11 47376950 47376950 C - SPI1 Frame_Shift_Del p.G215Afs*10 0.13 TCGA-D8-A27V-01 11 47684631 47684631 G - AGBL2 Frame_Shift_Del p.L828Wfs*8 0.10 TCGA-D8-A27V-01 11 47758266 47758266 T - FNBP4 Frame_Shift_Del p.I495* 0.08 TCGA-D8-A27V-01 11 48511095 48511095 C - OR4A47 Frame_Shift_Del p.P251Lfs*19 0.09 TCGA-D8-A27V-01 11 4945310 4945310 A - OR51G1 Frame_Shift_Del p.F87Sfs*52 0.17 TCGA-D8-A27V-01 11 5255610 5255610 T - HBD Frame_Shift_Del p.V19* 0.08 TCGA-D8-A27V-01 11 5475095 5475095 T - OR51I2 Frame_Shift_Del p.C127Vfs*20 0.09 TCGA-D8-A27V-01 11 55322684 55322684 T - OR4C15 Frame_Shift_Del p.L302Cfs*30 0.08 TCGA-D8-A27V-01 11 55890553 55890553 G T OR8H3 Missense_Mutation p.Q235H 0.29 tolerated(0.32) benign(0.008) TCGA-D8-A27V-01 11 56127892 56127892 C - OR8J1 Frame_Shift_Del p.M59Cfs*24 0.08 TCGA-D8-A27V-01 11 57077036 57077036 T - TNKS1BP1 Frame_Shift_Del p.N1050Tfs*83 0.11 TCGA-D8-A27V-01 11 58381747 58381747 C - ZFP91 Frame_Shift_Del p.H346Ifs*47 0.10 TCGA-D8-A27V-01 11 5842336 5842336 T - OR52N2 Frame_Shift_Del p.F259Sfs*9 0.09 TCGA-D8-A27V-01 11 5906368 5906368 G - OR52E4 Frame_Shift_Del p.V283Lfs*23 0.08 TCGA-D8-A27V-01 11 59224492 59224492 C - OR4D6 Frame_Shift_Del p.R21Efs*16 0.08 TCGA-D8-A27V-01 11 59271272 59271272 C - OR4D11 Frame_Shift_Del p.T76Qfs*23 0.09 TCGA-D8-A27V-01 11 59345689 59345689 C - OSBP Frame_Shift_Del p.D665Mfs*37 0.08 TCGA-D8-A27V-01 11 59377961 59377961 C - OSBP Frame_Shift_Del p.G155Vfs*7 0.09 TCGA-D8-A27V-01 11 60689314 60689314 G - TMEM109 Frame_Shift_Del p.A138Pfs*26 0.11 TCGA-D8-A27V-01 11 60886419 60886419 C - CD5 Frame_Shift_Del p.P146Rfs*65 0.08 TCGA-D8-A27V-01 11 61032632 61032632 G - VWCE Frame_Shift_Del p.P673Lfs*45 0.16 TCGA-D8-A27V-01 11 61089078 61089078 G - DDB1 Frame_Shift_Del p.P405Qfs*34 0.08 TCGA-D8-A27V-01 11 61551327 61551327 G - MYRF Frame_Shift_Del p.N1043Tfs*18 0.12 TCGA-D8-A27V-01 11 62362477 62362477 G - MTA2 Frame_Shift_Del p.L517Wfs*14 0.10 TCGA-D8-A27V-01 11 62400726 62400726 C - GANAB Frame_Shift_Del p.K239Rfs*50 0.08 TCGA-D8-A27V-01 11 62445535 62445535 C - UBXN1 Frame_Shift_Del p.E116Rfs*43 0.14 TCGA-D8-A27V-01 11 62556503 62556503 C G TMEM179B Missense_Mutation p.F35L 0.29 deleterious(0) benign(0.056) TCGA-D8-A27V-01 11 62592953 62592953 C - STX5 Frame_Shift_Del p.G161Afs*34 0.12 TCGA-D8-A27V-01 11 62782297 62782297 G - SLC22A8 Frame_Shift_Del p.P45Lfs*65 0.08 TCGA-D8-A27V-01 11 62933560 62933560 A - SLC22A25 Frame_Shift_Del p.F414Sfs*46 0.11 TCGA-D8-A27V-01 11 63071638 63071638 T - SLC22A10 Frame_Shift_Del p.S450Pfs*22 0.09 TCGA-D8-A27V-01 11 63276047 63276047 T - LGALS12 Frame_Shift_Del p.F54Lfs*18 0.08 TCGA-D8-A27V-01 11 63327626 63327626 A - HRASLS2 Frame_Shift_Del p.S17Lfs*38 0.10 TCGA-D8-A27V-01 11 63719939 63719939 C - NAA40 Frame_Shift_Del p.R105Efs*64 0.09 TCGA-D8-A27V-01 11 63918791 63918791 T - MACROD1 Frame_Shift_Del p.K146Rfs*103 0.08 TCGA-D8-A27V-01 11 64010706 64010706 C - FKBP2 Frame_Shift_Del p.L70Cfs*36 0.12 TCGA-D8-A27V-01 11 64021925 64021925 C - PLCB3 Frame_Shift_Del p.N48Mfs*56 0.15 TCGA-D8-A27V-01 11 64453309 64453309 G - NRXN2 Frame_Shift_Del p.L321Cfs*6 0.08 TCGA-D8-A27V-01 11 6461730 6461730 G - HPX Frame_Shift_Del p.L61Wfs*25 0.09 TCGA-D8-A27V-01 11 64813371 64813371 C - NAALADL1 Frame_Shift_Del p.M654Cfs*6 0.09 TCGA-D8-A27V-01 11 64822177 64822177 C - NAALADL1 Frame_Shift_Del p.V213Cfs*14 0.12 TCGA-D8-A27V-01 11 64824862 64824862 C - NAALADL1 Frame_Shift_Del p.G195Vfs*2 0.12 TCGA-D8-A27V-01 11 64882492 64882492 C - TM7SF2 Frame_Shift_Del p.L278Cfs*190 0.09 TCGA-D8-A27V-01 11 65650730 65650730 C - CTSW Frame_Shift_Del p.Q287Sfs*43 0.11 TCGA-D8-A27V-01 11 65793762 65793762 G - CATSPER1 Frame_Shift_Del p.P30Hfs*305 0.12 TCGA-D8-A27V-01 11 6590000 6590000 A - DNHD1 Frame_Shift_Del p.Q4256Hfs*36 0.08 TCGA-D8-A27V-01 11 66333191 66333191 G - CTSF Frame_Shift_Del p.C333Afs*13 0.17 TCGA-D8-A27V-01 11 6647183 6647183 G - DCHS1 Frame_Shift_Del p.I2234Sfs*14 0.10 TCGA-D8-A27V-01 11 66975025 66975025 G - KDM2A Frame_Shift_Del p.G118Afs*4 0.16 TCGA-D8-A27V-01 11 67164937 67164937 C - RAD9A Frame_Shift_Del p.R362Afs*35 0.10 TCGA-D8-A27V-01 11 67377939 67377939 G - NDUFV1 Frame_Shift_Del p.A201Lfs*25 0.08 TCGA-D8-A27V-01 11 67789201 67789201 T - ALDH3B1 Frame_Shift_Del p.F270Sfs*59 0.16 TCGA-D8-A27V-01 11 67864595 67864595 C - CHKA Frame_Shift_Del p.G118Afs*37 0.10 TCGA-D8-A27V-01 11 6806888 6806888 T - OR2AG1 Frame_Shift_Del p.L207Rfs*39 0.09 TCGA-D8-A27V-01 11 68204426 68204426 C - LRP5 Frame_Shift_Del p.F1358Sfs*81 0.08 TCGA-D8-A27V-01 11 6867508 6891538 11:6867508-6891538 - OR10A5 large deletion 0.09 TCGA-D8-A27V-01 11 6867524 6891554 11:6867524-6891554 - OR10A5 large deletion 0.08 TCGA-D8-A27V-01 11 686883 686883 C - DEAF1 Frame_Shift_Del p.G260Afs*13 0.09 TCGA-D8-A27V-01 11 700619 700619 G - TMEM80 Frame_Shift_Del p.V72Cfs*18 0.09 TCGA-D8-A27V-01 11 7065114 7065114 T - NLRP14 Frame_Shift_Del p.F620Sfs*16 0.10 TCGA-D8-A27V-01 11 71502834 71502834 C - FAM86C1 Intron 0.09 TCGA-D8-A27V-01 11 71705825 71705825 G - RNF121 Frame_Shift_Del p.Q231Sfs*49 0.09 TCGA-D8-A27V-01 11 71821277 71821277 G - ANAPC15 Intron 0.10 TCGA-D8-A27V-01 11 72533924 72533924 G T ATG16L2 Nonsense_Mutation p.E248* 0.23 TCGA-D8-A27V-01 11 72700072 72700072 T - FCHSD2 Frame_Shift_Del p.K153Rfs*39 0.11 TCGA-D8-A27V-01 11 73020998 73020998 C - ARHGEF17 Frame_Shift_Del p.P439Lfs*8 0.16 TCGA-D8-A27V-01 11 73070988 73070988 C - ARHGEF17 Frame_Shift_Del p.H1401Tfs*80 0.15 TCGA-D8-A27V-01 11 73360056 73360056 G - PLEKHB1 Splice_Site p.X7_splice 0.10 TCGA-D8-A27V-01 11 73611387 73611387 G - PAAF1 Frame_Shift_Del p.G153Efs*6 0.12 TCGA-D8-A27V-01 11 73785429 73785429 G - C2CD3 Frame_Shift_Del p.P1607Lfs*17 0.11 TCGA-D8-A27V-01 11 73879514 73879514 C - C2CD3 Frame_Shift_Del p.G67Efs*22 0.09 TCGA-D8-A27V-01 11 74047644 74047644 T - PGM2L1 3'UTR 0.13 TCGA-D8-A27V-01 11 74554401 74554401 C - XRRA1 Frame_Shift_Del p.Q742Sfs*3 0.15 TCGA-D8-A27V-01 11 77066781 77066781 A - PAK1 Frame_Shift_Del p.L235* 0.11 TCGA-D8-A27V-01 11 7721877 7721877 T - OVCH2 Frame_Shift_Del p.V290Cfs*28 0.08 TCGA-D8-A27V-01 11 77672117 77672117 A - INTS4 Frame_Shift_Del p.L180Wfs*12 0.18 TCGA-D8-A27V-01 11 77919962 77919962 T - USP35 Frame_Shift_Del p.G516Afs*10 0.11 TCGA-D8-A27V-01 11 78369697 78369697 A - TENM4 Frame_Shift_Del p.F2572Lfs*3 0.10 TCGA-D8-A27V-01 11 78380231 78380231 C - TENM4 Frame_Shift_Del p.E2387Rfs*14 0.12 TCGA-D8-A27V-01 11 7984895 7984895 C A NLRP10 Nonsense_Mutation p.E50* 0.22 TCGA-D8-A27V-01 11 86103679 86103679 T - CCDC81 Frame_Shift_Del p.L134Yfs*7 0.08 TCGA-D8-A27V-01 11 86161378 86161378 A - ME3 Frame_Shift_Del p.S328Pfs*25 0.14 TCGA-D8-A27V-01 11 89449125 89449125 G - TRIM77 Frame_Shift_Del p.V278Cfs*29 0.12 TCGA-D8-A27V-01 11 8977806 8977806 C - TMEM9B Frame_Shift_Del p.P80Lfs*3 0.12 TCGA-D8-A27V-01 11 9077392 9077392 A - SCUBE2 Frame_Shift_Del p.F385Lfs*35 0.09 TCGA-D8-A27V-01 11 9087459 9087459 C - SCUBE2 Frame_Shift_Del p.V277* 0.10 TCGA-D8-A27V-01 11 93408802 93408802 T - KIAA1731 Frame_Shift_Del p.F199Lfs*2 0.16 TCGA-D8-A27V-01 11 94354103 94354103 A - PIWIL4 Frame_Shift_Del p.S836Afs*10 0.13 TCGA-D8-A27V-01 11 9442019 9442019 G - IPO7 Frame_Shift_Del p.A264Pfs*5 0.08 TCGA-D8-A27V-01 11 94759658 94759658 A - KDM4E Frame_Shift_Del p.T313Qfs*2 0.14 TCGA-D8-A27V-01 11 95712522 95712522 T - MAML2 Frame_Shift_Del p.T1021Hfs*6 0.09 TCGA-D8-A27V-01 12 100452901 100452901 A - UHRF1BP1L Frame_Shift_Del p.F718Lfs*2 0.13 TCGA-D8-A27V-01 12 10165401 10165401 C - CLEC12B Frame_Shift_Del p.I38Ffs*10 0.08 TCGA-D8-A27V-01 12 102437931 102437931 G - CCDC53 Frame_Shift_Del p.S93Vfs*36 0.10 TCGA-D8-A27V-01 12 102589882 102589882 A - PARPBP Frame_Shift_Del p.N519Ifs*33 0.14 TCGA-D8-A27V-01 12 103238153 103238153 T - PAH Frame_Shift_Del p.Y343Mfs*57 0.12 TCGA-D8-A27V-01 12 104014267 104014267 C - STAB2 Frame_Shift_Del p.S118Yfs*58 0.08 TCGA-D8-A27V-01 12 104714925 104714925 C - TXNRD1 Frame_Shift_Del p.Y350Mfs*15 0.10 TCGA-D8-A27V-01 12 104714962 104714962 T - TXNRD1 Frame_Shift_Del p.I362Lfs*3 0.09 TCGA-D8-A27V-01 12 10531234 10531234 C G KLRK1 Missense_Mutation p.E116D 0.25 deleterious(0.01) possibly_damaging(0.596) TCGA-D8-A27V-01 12 105420464 105420464 C - ALDH1L2 Frame_Shift_Del p.V859Ffs*6 0.09 TCGA-D8-A27V-01 12 105445924 105445924 A - ALDH1L2 Frame_Shift_Del p.F493Lfs*9 0.08 TCGA-D8-A27V-01 12 10583821 10583821 T - KLRC2 Frame_Shift_Del p.D198Tfs*14 0.10 TCGA-D8-A27V-01 12 106977064 106977064 T - RP11-144F15.1 Intron 0.12 TCGA-D8-A27V-01 12 107391752 107391752 A - CRY1 Frame_Shift_Del p.H411Tfs*26 0.17 TCGA-D8-A27V-01 12 108045517 108045517 A - BTBD11 Frame_Shift_Del p.S1021Afs*34 0.08 TCGA-D8-A27V-01 12 108137036 108137036 T - PRDM4 Frame_Shift_Del p.E473Dfs*15 0.10 TCGA-D8-A27V-01 12 10868314 10868314 A - YBX3 Frame_Shift_Del p.F143Lfs*15 0.09 TCGA-D8-A27V-01 12 108926094 108926094 G - SART3 Frame_Shift_Del p.Q525Sfs*35 0.13 TCGA-D8-A27V-01 12 109017363 109017363 C - SELPLG Frame_Shift_Del p.A257Hfs*77 0.09 TCGA-D8-A27V-01 12 109017626 109017626 G - SELPLG Frame_Shift_Del p.T169Kfs*4 0.14 TCGA-D8-A27V-01 12 109306298 109306298 C - SVOP 3'UTR 0.11 TCGA-D8-A27V-01 12 109845716 109845716 A - MYO1H Frame_Shift_Del p.K369Rfs*8 0.09 TCGA-D8-A27V-01 12 110034267 110034267 C - MVK Frame_Shift_Del p.L360* 0.12 TCGA-D8-A27V-01 12 110370832 110370832 T - GIT2 Frame_Shift_Del p.K744Rfs*54 0.09 TCGA-D8-A27V-01 12 111893936 111893936 G - ATXN2 Frame_Shift_Del p.P1214Hfs*53 0.10 TCGA-D8-A27V-01 12 112477051 112477051 T - NAA25 Frame_Shift_Del p.E878Kfs*23 0.08 TCGA-D8-A27V-01 12 113645867 113645867 T - IQCD Frame_Shift_Del p.K35Nfs*32 0.08 TCGA-D8-A27V-01 12 114395612 114395612 T - RBM19 Frame_Shift_Del p.K272Rfs*25 0.14 TCGA-D8-A27V-01 12 117290387 117290387 A - RNFT2 3'Flank 0.16 TCGA-D8-A27V-01 12 117655862 117655862 T - NOS1 Frame_Shift_Del p.D1461Tfs*21 0.12 TCGA-D8-A27V-01 12 117909001 117909001 T - KSR2 Frame_Shift_Del p.I903Sfs*106 0.09 TCGA-D8-A27V-01 12 118504323 118504323 A - VSIG10 3'UTR 0.13 TCGA-D8-A27V-01 12 120156201 120156201 T - CIT Frame_Shift_Del p.A1340Qfs*33 0.13 TCGA-D8-A27V-01 12 120941589 120941589 A - COQ5 Frame_Shift_Del p.*328N 0.14 TCGA-D8-A27V-01 12 120995422 120995422 G - RNF10 Frame_Shift_Del p.V303Cfs*11 0.10 TCGA-D8-A27V-01 12 121000807 121000807 G - RNF10 Frame_Shift_Del p.A397Lfs*8 0.08 TCGA-D8-A27V-01 12 121013619 121013619 C - RNF10 Frame_Shift_Del p.P743Lfs*32 0.14 TCGA-D8-A27V-01 12 121442026 121442026 T - C12orf43 Frame_Shift_Del p.K240Rfs*71 0.09 TCGA-D8-A27V-01 12 121603969 121603969 T - P2RX7 Frame_Shift_Del p.S243Qfs*9 0.12 TCGA-D8-A27V-01 12 122247669 122247669 C - SETD1B Frame_Shift_Del p.P274Rfs*33 0.12 TCGA-D8-A27V-01 12 122473252 122473252 A - BCL7A Frame_Shift_Del p.G66Afs*10 0.15 TCGA-D8-A27V-01 12 122669140 122669140 C - LRRC43 Frame_Shift_Del p.G77Efs*22 0.13 TCGA-D8-A27V-01 12 12315181 12315181 A - LRP6 Frame_Shift_Del p.L742Wfs*6 0.16 TCGA-D8-A27V-01 12 123907594 123907594 T - RILPL2 Frame_Shift_Del p.K201Sfs*44 0.08 TCGA-D8-A27V-01 12 123984069 123984069 C - RILPL1 Frame_Shift_Del p.E159Sfs*4 0.14 TCGA-D8-A27V-01 12 124155838 124155838 G - TCTN2 Frame_Shift_Del p.G18Afs*3 0.10 TCGA-D8-A27V-01 12 124192227 124192227 C - TCTN2 Frame_Shift_Del p.W689Gfs*29 0.09 TCGA-D8-A27V-01 12 124341636 124341636 A - DNAH10 Frame_Shift_Del p.N2040Tfs*16 0.08 TCGA-D8-A27V-01 12 124379225 124379225 C - DNAH10 Frame_Shift_Del p.W2962Gfs*14 0.12 TCGA-D8-A27V-01 12 124419193 124419193 G - DNAH10 Frame_Shift_Del p.E4384Kfs*7 0.09 TCGA-D8-A27V-01 12 128899430 128899430 G - TMEM132C Frame_Shift_Del p.V81Wfs*32 0.09 TCGA-D8-A27V-01 12 129293367 129293367 G - SLC15A4 Frame_Shift_Del p.M409Cfs*19 0.09 TCGA-D8-A27V-01 12 131283115 131283115 T - STX2 Frame_Shift_Del p.E248Kfs*19 0.11 TCGA-D8-A27V-01 12 13229033 13229033 T - KIAA1467 Frame_Shift_Del p.L534Wfs*10 0.09 TCGA-D8-A27V-01 12 132508413 132508413 C - EP400 Frame_Shift_Del p.Q1595Rfs*46 0.10 TCGA-D8-A27V-01 12 133220486 133220486 T - POLE Frame_Shift_Del p.E1409Dfs*44 0.09 TCGA-D8-A27V-01 12 13529258 13529258 C T C12orf36 Missense_Mutation p.E28K 0.28 possibly_damaging(0.486) TCGA-D8-A27V-01 12 14766108 14766108 T - GUCY2C Frame_Shift_Del p.G1056Afs*8 0.08 TCGA-D8-A27V-01 12 14781582 14781582 A - GUCY2C Frame_Shift_Del p.F749Lfs*16 0.09 TCGA-D8-A27V-01 12 14781608 14781608 T - GUCY2C Frame_Shift_Del p.I741Lfs*24 0.10 TCGA-D8-A27V-01 12 14952568 14952568 C - WBP11 Splice_Site p.X64_splice 0.09 TCGA-D8-A27V-01 12 15742474 15742474 G - PTPRO Frame_Shift_Del p.L1167Wfs*5 0.08 TCGA-D8-A27V-01 12 15794745 15794745 T - EPS8 Frame_Shift_Del p.T530Hfs*14 0.09 TCGA-D8-A27V-01 12 18890331 18890331 C G PLCZ1 5'UTR 0.31 TCGA-D8-A27V-01 12 1920875 1920875 T - CACNA2D4 Frame_Shift_Del p.M856* 0.11 TCGA-D8-A27V-01 12 20870106 20870106 T - SLCO1C1 Frame_Shift_Del p.F240Sfs*3 0.11 TCGA-D8-A27V-01 12 21692231 21692231 A - GYS2 Frame_Shift_Del p.P618Qfs*8 0.10 TCGA-D8-A27V-01 12 21693443 21693443 A - GYS2 Frame_Shift_Del p.L571Sfs*31 0.10 TCGA-D8-A27V-01 12 21733400 21733400 C - GYS2 Frame_Shift_Del p.G60Efs*6 0.08 TCGA-D8-A27V-01 12 21794947 21794947 T - LDHB Frame_Shift_Del p.K178Nfs*28 0.13 TCGA-D8-A27V-01 12 22623816 22623816 A - C2CD5 Frame_Shift_Del p.F796Lfs*51 0.09 TCGA-D8-A27V-01 12 25656701 25656701 T - IFLTD1 Frame_Shift_Del p.K408Sfs*11 0.10 TCGA-D8-A27V-01 12 2566791 2566791 G - CACNA1C Frame_Shift_Del p.A229Pfs*5 0.14 TCGA-D8-A27V-01 12 25699344 25699344 G - IFLTD1 Frame_Shift_Del p.S152Lfs*2 0.11 TCGA-D8-A27V-01 12 266270 266270 C - IQSEC3 Frame_Shift_Del p.Q745Rfs*60 0.11 TCGA-D8-A27V-01 12 26639136 26639136 T - ITPR2 Frame_Shift_Del p.K1904Nfs*6 0.11 TCGA-D8-A27V-01 12 2692002 2692002 G - CACNA1C Frame_Shift_Del p.D707Tfs*5 0.17 TCGA-D8-A27V-01 12 27109547 27109547 C - FGFR1OP2 Frame_Shift_Del p.Q70Sfs*31 0.10 TCGA-D8-A27V-01 12 2721114 2721114 A - CACNA1C Frame_Shift_Del p.N1275Tfs*12 0.09 TCGA-D8-A27V-01 12 27462120 27462120 A - STK38L Frame_Shift_Del p.E130Sfs*14 0.13 TCGA-D8-A27V-01 12 29671503 29671503 G - TMTC1 Frame_Shift_Del p.I643Sfs*12 0.09 TCGA-D8-A27V-01 12 2973870 2973870 T - FOXM1 Frame_Shift_Del p.T357Pfs*11 0.09 TCGA-D8-A27V-01 12 32135323 32135323 A - KIAA1551 Frame_Shift_Del p.N479Ifs*7 0.09 TCGA-D8-A27V-01 12 32480579 32480579 G - BICD1 Frame_Shift_Del p.D398Tfs*16 0.11 TCGA-D8-A27V-01 12 33031121 33031121 A - PKP2 Frame_Shift_Del p.F231Lfs*32 0.10 TCGA-D8-A27V-01 12 3701397 3701397 C - PRMT8 Frame_Shift_Del p.P328Lfs*33 0.09 TCGA-D8-A27V-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.09 TCGA-D8-A27V-01 12 40681285 40681285 T - LRRK2 Frame_Shift_Del p.P879Lfs*26 0.08 TCGA-D8-A27V-01 12 41318435 41318435 C - CNTN1 Frame_Shift_Del p.P161Hfs*14 0.10 TCGA-D8-A27V-01 12 42853689 42853689 G - PRICKLE1 Frame_Shift_Del p.T807Pfs*40 0.09 TCGA-D8-A27V-01 12 44913859 44913859 T - NELL2 Frame_Shift_Del p.M827* 0.10 TCGA-D8-A27V-01 12 46320402 46320402 T - SCAF11 Frame_Shift_Del p.I1028* 0.10 TCGA-D8-A27V-01 12 46322221 46322221 T - SCAF11 Frame_Shift_Del p.E422Sfs*6 0.09 TCGA-D8-A27V-01 12 47471488 47471488 T - AMIGO2 Frame_Shift_Del p.N433Ifs*40 0.08 TCGA-D8-A27V-01 12 4777646 4777646 C - NDUFA9 Frame_Shift_Del p.G229Vfs*15 0.10 TCGA-D8-A27V-01 12 4829850 4829850 T - GALNT8 Frame_Shift_Del p.W4Gfs*12 0.12 TCGA-D8-A27V-01 12 48359688 48359688 T - TMEM106C Frame_Shift_Del p.P108Rfs*14 0.08 TCGA-D8-A27V-01 12 49225024 49225024 C - DDX23 Frame_Shift_Del p.A714Pfs*66 0.10 TCGA-D8-A27V-01 12 49230011 49230011 C - DDX23 Frame_Shift_Del p.L426Yfs*70 0.11 TCGA-D8-A27V-01 12 49237755 49237755 C - DDX23 Frame_Shift_Del p.H97Tfs*78 0.10 TCGA-D8-A27V-01 12 49333830 49333830 C - ARF3 Frame_Shift_Del p.G70Afs*19 0.11 TCGA-D8-A27V-01 12 49373396 49373396 G - WNT1 Frame_Shift_Del p.L86Cfs*113 0.15 TCGA-D8-A27V-01 12 49421848 49421848 G - KMT2D Frame_Shift_Del p.P4820Qfs*38 0.10 TCGA-D8-A27V-01 12 49428411 49428411 C - KMT2D Frame_Shift_Del p.G3465Dfs*37 0.10 TCGA-D8-A27V-01 12 49438211 49438211 T - KMT2D Frame_Shift_Del p.K1686Nfs*36 0.19 TCGA-D8-A27V-01 12 49491488 49491488 G A LMBR1L Silent p.F479F 0.12 TCGA-D8-A27V-01 12 49992672 49992672 G - FAM186B Frame_Shift_Del p.Q744Rfs*36 0.11 TCGA-D8-A27V-01 12 50152538 50152538 T - TMBIM6 Frame_Shift_Del p.F228Sfs*43 0.08 TCGA-D8-A27V-01 12 50189471 50189471 C - NCKAP5L Frame_Shift_Del p.I725Yfs*12 0.14 TCGA-D8-A27V-01 12 50367074 50367074 T - AQP6 Frame_Shift_Del p.F40Lfs*46 0.10 TCGA-D8-A27V-01 12 50385838 50385838 G - RACGAP1 Frame_Shift_Del p.L553Yfs*20 0.08 TCGA-D8-A27V-01 12 50501411 50501411 C - GPD1 Frame_Shift_Del p.A225Gfs*3 0.09 TCGA-D8-A27V-01 12 50747363 50747363 C - FAM186A Frame_Shift_Del p.I1085Sfs*23 0.09 TCGA-D8-A27V-01 12 50754621 50754621 T - FAM186A Frame_Shift_Del p.A168Lfs*9 0.09 TCGA-D8-A27V-01 12 50794800 50794800 C - LARP4 Frame_Shift_Del p.L3Ffs*6 0.09 TCGA-D8-A27V-01 12 51386089 51386089 G - SLC11A2 Frame_Shift_Del p.R440Efs*4 0.08 TCGA-D8-A27V-01 12 51636355 51636355 G - DAZAP2 Frame_Shift_Del p.C183Vfs*14 0.08 TCGA-D8-A27V-01 12 51735039 51735039 C - CELA1 Frame_Shift_Del p.G151Afs*36 0.12 TCGA-D8-A27V-01 12 52699513 52699513 A - KRT86 Frame_Shift_Del p.N323Tfs*3 0.09 TCGA-D8-A27V-01 12 52864336 52864336 G - KRT6C Frame_Shift_Del p.R386Afs*2 0.09 TCGA-D8-A27V-01 12 52913766 52913766 A - KRT5 Frame_Shift_Del p.F105Lfs*46 0.09 TCGA-D8-A27V-01 12 52963692 52963692 T - KRT74 Frame_Shift_Del p.N362Tfs*14 0.08 TCGA-D8-A27V-01 12 53225246 53225246 C - KRT79 Frame_Shift_Del p.R215Gfs*58 0.11 TCGA-D8-A27V-01 12 53512138 53512138 G - SOAT2 Frame_Shift_Del p.I263Sfs*64 0.09 TCGA-D8-A27V-01 12 53573582 53573582 G - CSAD Frame_Shift_Del p.P4Hfs*2 0.10 TCGA-D8-A27V-01 12 53647394 53647394 T - MFSD5 Frame_Shift_Del p.F366Lfs*71 0.11 TCGA-D8-A27V-01 12 53686716 53686716 G - ESPL1 Frame_Shift_Del p.A2043Lfs*22 0.09 TCGA-D8-A27V-01 12 53803227 53803227 C - SP1 Frame_Shift_Del p.L643Cfs*54 0.09 TCGA-D8-A27V-01 12 54645846 54645846 G C CBX5 Missense_Mutation p.I101M 0.17 tolerated(0.12) benign(0.048) TCGA-D8-A27V-01 12 54686674 54686674 G - NFE2 Frame_Shift_Del p.L203Wfs*3 0.12 TCGA-D8-A27V-01 12 54689014 54689014 G - NFE2 Frame_Shift_Del p.Q7Sfs*7 0.08 TCGA-D8-A27V-01 12 54764426 54764426 C - ZNF385A Frame_Shift_Del p.G305Afs*9 0.18 TCGA-D8-A27V-01 12 54914957 54914957 T - NCKAP1L Frame_Shift_Del p.L605Wfs*19 0.10 TCGA-D8-A27V-01 12 55039443 55039443 G - DCD Frame_Shift_Del p.P49Qfs*3 0.08 TCGA-D8-A27V-01 12 56081820 56081820 C - ITGA7 Frame_Shift_Del p.V1044Sfs*13 0.08 TCGA-D8-A27V-01 12 56398569 56398569 G - SUOX Frame_Shift_Del p.G467Afs*2 0.09 TCGA-D8-A27V-01 12 56515530 56515530 C - ZC3H10 Frame_Shift_Del p.P396Lfs*15 0.09 TCGA-D8-A27V-01 12 56522218 56522218 G - ESYT1 Frame_Shift_Del p.G40Afs*16 0.14 TCGA-D8-A27V-01 12 56558237 56558237 C - SMARCC2 Frame_Shift_Del p.A1140Rfs*143 0.08 TCGA-D8-A27V-01 12 56607801 56607801 C - RNF41 Frame_Shift_Del p.D11Mfs*50 0.10 TCGA-D8-A27V-01 12 56663336 56663336 G - COQ10A Frame_Shift_Del p.D190Tfs*50 0.10 TCGA-D8-A27V-01 12 56737705 56737705 T - STAT2 Frame_Shift_Del p.T773Qfs*23 0.09 TCGA-D8-A27V-01 12 56755594 56755594 T - APOF Frame_Shift_Del p.G133Afs*20 0.09 TCGA-D8-A27V-01 12 56824019 56824019 G - TIMELESS Frame_Shift_Del p.P319Lfs*20 0.08 TCGA-D8-A27V-01 12 56998565 56998565 C - BAZ2A Frame_Shift_Del p.E925Rfs*8 0.12 TCGA-D8-A27V-01 12 57389162 57389162 T - GPR182 Frame_Shift_Del p.F57Lfs*18 0.09 TCGA-D8-A27V-01 12 57592088 57592088 C - LRP1 Frame_Shift_Del p.R3145Vfs*25 0.09 TCGA-D8-A27V-01 12 57652699 57652699 G - R3HDM2 Frame_Shift_Del p.L745Cfs*14 0.10 TCGA-D8-A27V-01 12 57693170 57693170 T - R3HDM2 Frame_Shift_Del p.N129Tfs*24 0.09 TCGA-D8-A27V-01 12 57843500 57843500 T - INHBC Frame_Shift_Del p.F253Lfs*21 0.09 TCGA-D8-A27V-01 12 57910280 57910280 G - MARS Frame_Shift_Del p.A874Rfs*6 0.10 TCGA-D8-A27V-01 12 57992892 57992892 G - PIP4K2C Frame_Shift_Del p.M188Cfs*15 0.08 TCGA-D8-A27V-01 12 59274556 59274556 T - LRIG3 Frame_Shift_Del p.D537Tfs*23 0.11 TCGA-D8-A27V-01 12 62887729 62887729 T - MON2 Frame_Shift_Del p.L72* 0.08 TCGA-D8-A27V-01 12 6427501 6427501 C - PLEKHG6 Frame_Shift_Del p.M399Cfs*20 0.12 TCGA-D8-A27V-01 12 64521663 64521663 C - SRGAP1 Frame_Shift_Del p.P856Lfs*3 0.10 TCGA-D8-A27V-01 12 64588066 64588066 A - C12orf66 Frame_Shift_Del p.F298Lfs*18 0.09 TCGA-D8-A27V-01 12 6483539 6483539 G - SCNN1A Frame_Shift_Del p.Y197Tfs*54 0.09 TCGA-D8-A27V-01 12 65461526 65461526 T - WIF1 Frame_Shift_Del p.R195Dfs*25 0.10 TCGA-D8-A27V-01 12 667777 667777 C - B4GALNT3 Frame_Shift_Del p.M906Wfs*2 0.08 TCGA-D8-A27V-01 12 6680152 6680152 C T CHD4 Silent p.V1868V 0.26 TCGA-D8-A27V-01 12 6781651 6781651 G - ZNF384 Frame_Shift_Del p.P320Rfs*99 0.09 TCGA-D8-A27V-01 12 68549174 68549174 T - IFNG Frame_Shift_Del p.R154Gfs*22 0.10 TCGA-D8-A27V-01 12 68645315 68645315 T - IL22 Frame_Shift_Del p.K147Sfs*2 0.08 TCGA-D8-A27V-01 12 6946158 6946158 G - LEPREL2 Frame_Shift_Del p.A490Lfs*48 0.12 TCGA-D8-A27V-01 12 6965284 6965284 G - USP5 Frame_Shift_Del p.G138Dfs*10 0.17 TCGA-D8-A27V-01 12 6972479 6972479 T - USP5 Frame_Shift_Del p.G632Vfs*58 0.08 TCGA-D8-A27V-01 12 69991047 69991047 T - CCT2 Frame_Shift_Del p.A366Pfs*18 0.08 TCGA-D8-A27V-01 12 70003905 70003905 C - LRRC10 Frame_Shift_Del p.R239Dfs*92 0.09 TCGA-D8-A27V-01 12 7043144 7043144 G - ATN1 5'UTR 0.08 TCGA-D8-A27V-01 12 71016207 71016207 A - PTPRB Frame_Shift_Del p.L224Cfs*68 0.08 TCGA-D8-A27V-01 12 7175759 7175759 G - C1S Splice_Site p.X400_splice 0.09 TCGA-D8-A27V-01 12 71978347 71978347 A - LGR5 Frame_Shift_Del p.N853Tfs*17 0.13 TCGA-D8-A27V-01 12 72024697 72024697 G - ZFC3H1 Frame_Shift_Del p.L1170* 0.08 TCGA-D8-A27V-01 12 72300868 72300868 T - TBC1D15 Frame_Shift_Del p.L435Yfs*6 0.09 TCGA-D8-A27V-01 12 72667179 72667179 T - TRHDE Frame_Shift_Del p.F209Sfs*9 0.08 TCGA-D8-A27V-01 12 7280956 7280956 T - RBP5 Frame_Shift_Del p.E44Dfs*7 0.12 TCGA-D8-A27V-01 12 7360358 7360358 T - PEX5 Frame_Shift_Del p.F373Lfs*30 0.09 TCGA-D8-A27V-01 12 7531839 7531839 T - CD163L1 Frame_Shift_Del p.V703Lfs*3 0.11 TCGA-D8-A27V-01 12 75436942 75436942 G - KCNC2 Frame_Shift_Del p.Y621Tfs*7 0.08 TCGA-D8-A27V-01 12 75897787 75897787 A - KRR1 Frame_Shift_Del p.L243Cfs*9 0.09 TCGA-D8-A27V-01 12 76424351 76424351 G - PHLDA1 Frame_Shift_Del p.H391Tfs*66 0.10 TCGA-D8-A27V-01 12 7647689 7647689 T - CD163 Frame_Shift_Del p.I470Lfs*24 0.08 TCGA-D8-A27V-01 12 77220781 77220781 A - ZDHHC17 Frame_Shift_Del p.L333* 0.10 TCGA-D8-A27V-01 12 77417910 77417910 A - E2F7 Frame_Shift_Del p.F874Sfs*12 0.08 TCGA-D8-A27V-01 12 79693277 79693277 T - SYT1 Frame_Shift_Del p.F253Lfs*4 0.09 TCGA-D8-A27V-01 12 81026055 81026055 T - PTPRQ Frame_Shift_Del p.F1921Lfs*28 0.08 TCGA-D8-A27V-01 12 81593178 81593178 A - ACSS3 Frame_Shift_Del p.N438Mfs*8 0.10 TCGA-D8-A27V-01 12 85695204 85695204 T - ALX1 Frame_Shift_Del p.R312Efs*2 0.12 TCGA-D8-A27V-01 12 89984943 89984943 G - ATP2B1 Frame_Shift_Del p.I1162Lfs*37 0.15 TCGA-D8-A27V-01 12 95387988 95387988 T - NDUFA12 Frame_Shift_Del p.N72Tfs*22 0.10 TCGA-D8-A27V-01 12 95397374 95397374 A - NDUFA12 Frame_Shift_Del p.F28Sfs*11 0.30 TCGA-D8-A27V-01 12 96288821 96288821 T - CCDC38 Frame_Shift_Del p.R240Efs*17 0.09 TCGA-D8-A27V-01 12 96292192 96292192 T - CCDC38 Frame_Shift_Del p.A196Qfs*8 0.08 TCGA-D8-A27V-01 12 96422904 96422904 T - LTA4H Frame_Shift_Del p.K73Nfs*23 0.10 TCGA-D8-A27V-01 12 9885593 9885593 T - CLECL1 Frame_Shift_Del p.T90Lfs*7 0.11 TCGA-D8-A27V-01 12 98992429 98992429 A - SLC25A3 Frame_Shift_Del p.N198Tfs*3 0.14 TCGA-D8-A27V-01 13 101277817 101277817 G - TMTC4 Frame_Shift_Del p.P603Qfs*21 0.09 TCGA-D8-A27V-01 13 109707839 109707839 T - MYO16 Frame_Shift_Del p.Y1057Tfs*15 0.11 TCGA-D8-A27V-01 13 109707855 109707855 C T MYO16 Nonsense_Mutation p.Q1061* 0.19 TCGA-D8-A27V-01 13 110833678 110833678 A - COL4A1 Frame_Shift_Del p.F718Lfs*84 0.09 TCGA-D8-A27V-01 13 110895021 110895021 C - COL4A1 Splice_Site p.X48_splice 0.11 TCGA-D8-A27V-01 13 111077299 111077299 G - COL4A2 Splice_Site p.X106_splice 0.10 TCGA-D8-A27V-01 13 111371698 111371698 G A ING1 Missense_Mutation p.E230K 0.32 deleterious(0) probably_damaging(0.974) TCGA-D8-A27V-01 13 113170792 113170792 C - TUBGCP3 Frame_Shift_Del p.G683Dfs*9 0.08 TCGA-D8-A27V-01 13 113465035 113465035 C - ATP11A Frame_Shift_Del p.L146Cfs*19 0.09 TCGA-D8-A27V-01 13 114303715 114303715 C - ATP4B Frame_Shift_Del p.E284Sfs*101 0.13 TCGA-D8-A27V-01 13 114748753 114748753 A - RASA3 3'UTR 0.08 TCGA-D8-A27V-01 13 19753581 19753581 A - TUBA3C Frame_Shift_Del p.I42Mfs*51 0.08 TCGA-D8-A27V-01 13 19997151 19997151 G - TPTE2 3'UTR 0.08 TCGA-D8-A27V-01 13 21721336 21721336 T - SAP18 Frame_Shift_Del p.I125Mfs*15 0.11 TCGA-D8-A27V-01 13 21729250 21729250 T - SKA3 3'UTR 0.08 TCGA-D8-A27V-01 13 23913890 23913890 G - SACS Frame_Shift_Del p.N1376Tfs*17 0.10 TCGA-D8-A27V-01 13 25341441 25341441 T - RNF17 Frame_Shift_Del p.C56Vfs*6 0.09 TCGA-D8-A27V-01 13 25486135 25486135 C - CENPJ Frame_Shift_Del p.E173Kfs*19 0.09 TCGA-D8-A27V-01 13 25823416 25823416 G - MTMR6 Frame_Shift_Del p.P607Lfs*6 0.10 TCGA-D8-A27V-01 13 32911298 32911298 A - BRCA2 Frame_Shift_Del p.K936Nfs*24 0.11 TCGA-D8-A27V-01 13 35619508 35619508 T - NBEA Frame_Shift_Del p.F233Sfs*27 0.08 TCGA-D8-A27V-01 13 35644932 35644932 T - NBEA Frame_Shift_Del p.F506Lfs*34 0.11 TCGA-D8-A27V-01 13 36367564 36367564 T - DCLK1 Frame_Shift_Del p.K666Rfs*20 0.09 TCGA-D8-A27V-01 13 37539766 37539766 A - ALG5 Frame_Shift_Del p.L240Yfs*23 0.08 TCGA-D8-A27V-01 13 37614761 37614761 T - SUPT20H Frame_Shift_Del p.K155Nfs*19 0.12 TCGA-D8-A27V-01 13 40251716 40251716 G - COG6 Frame_Shift_Del 0.09 TCGA-D8-A27V-01 13 45540026 45540026 T - NUFIP1 Frame_Shift_Del p.K260Nfs*11 0.08 TCGA-D8-A27V-01 13 46142496 46142496 G - FAM194B Frame_Shift_Del p.L381* 0.10 TCGA-D8-A27V-01 13 49865924 49865924 A - CDADC1 3'UTR 0.13 TCGA-D8-A27V-01 13 51602382 51602382 T - RNA5SP29 5'Flank 0.12 TCGA-D8-A27V-01 13 77638832 77638832 T - MYCBP2 Frame_Shift_Del p.N4159Mfs*10 0.10 TCGA-D8-A27V-01 13 77818029 77818029 G - MYCBP2 Frame_Shift_Del p.C776Vfs*5 0.09 TCGA-D8-A27V-01 13 99098439 99098439 T - FARP1 Frame_Shift_Del p.F962Sfs*62 0.08 TCGA-D8-A27V-01 14 100135227 100135227 T - HHIPL1 Intron 0.09 TCGA-D8-A27V-01 14 100406391 100406391 G - EML1 Frame_Shift_Del p.S816Tfs*49 0.13 TCGA-D8-A27V-01 14 102452389 102452389 C - DYNC1H1 Frame_Shift_Del p.Q610Sfs*3 0.13 TCGA-D8-A27V-01 14 102472280 102472280 T - DYNC1H1 Frame_Shift_Del p.I1830Mfs*61 0.09 TCGA-D8-A27V-01 14 102808150 102808150 G - ZNF839 Frame_Shift_Del p.D807Ifs*26 0.13 TCGA-D8-A27V-01 14 102815019 102815019 G - CINP Frame_Shift_Del p.H187Tfs*9 0.11 TCGA-D8-A27V-01 14 104212862 104212862 G - PPP1R13B Frame_Shift_Del p.P333Hfs*5 0.09 TCGA-D8-A27V-01 14 104387356 104387356 C - C14orf2 5'UTR 0.08 TCGA-D8-A27V-01 14 105412550 105412550 G - AHNAK2 Frame_Shift_Del p.Q3080Rfs*2 0.14 TCGA-D8-A27V-01 14 105692429 105692429 C - BRF1 Frame_Shift_Del p.G342Afs*36 0.11 TCGA-D8-A27V-01 14 105958643 105958643 C - C14orf80 Frame_Shift_Del p.Q143Sfs*29 0.08 TCGA-D8-A27V-01 14 106091520 106091520 G - IGHG4 Frame_Shift_Del p.P125Qfs*8 0.08 TCGA-D8-A27V-01 14 106209129 106209129 C - IGHG1 Frame_Shift_Del p.V94Wfs*42 0.09 TCGA-D8-A27V-01 14 106237493 106237493 T - IGHG3 Frame_Shift_Del p.N84Tfs*2 0.08 TCGA-D8-A27V-01 14 106321155 106321155 G - IGHM Frame_Shift_Del p.N279Mfs*27 0.10 TCGA-D8-A27V-01 14 106518813 106518813 A - IGHV3-7 Frame_Shift_Del p.L14* 0.09 TCGA-D8-A27V-01 14 20848395 20848395 T - TEP1 Frame_Shift_Del p.S1668Afs*38 0.10 TCGA-D8-A27V-01 14 21552996 21552996 T - ARHGEF40 Frame_Shift_Del p.L1293Sfs*34 0.08 TCGA-D8-A27V-01 14 21623747 21623747 A - OR5AU1 Frame_Shift_Del p.F146Lfs*4 0.10 TCGA-D8-A27V-01 14 21960788 21960788 C - TOX4 Frame_Shift_Del p.P339Hfs*30 0.09 TCGA-D8-A27V-01 14 21967174 21967174 G - METTL3 Frame_Shift_Del p.N543Tfs*15 0.10 TCGA-D8-A27V-01 14 22236815 22236815 T - TRAV6 Frame_Shift_Del p.L28Cfs*2 0.08 TCGA-D8-A27V-01 14 23504004 23504004 A - PSMB5 Frame_Shift_Del p.L30* 0.09 TCGA-D8-A27V-01 14 23521790 23521790 C T CDH24 Missense_Mutation p.E419K 0.29 tolerated(0.24) benign(0.02) TCGA-D8-A27V-01 14 23538788 23538788 T - ACIN1 Frame_Shift_Del p.N779Tfs*93 0.09 TCGA-D8-A27V-01 14 23853749 23853749 C - MYH6 Frame_Shift_Del p.E1823Sfs*17 0.09 TCGA-D8-A27V-01 14 23874916 23874916 C - MYH6 Frame_Shift_Del p.D89Tfs*5 0.12 TCGA-D8-A27V-01 14 23885316 23885316 T - MYH7 Frame_Shift_Del p.K1617Rfs*34 0.09 TCGA-D8-A27V-01 14 23891389 23891389 T - MYH7 Frame_Shift_Del p.D1084Tfs*4 0.09 TCGA-D8-A27V-01 14 24568892 24568892 G - PCK2 Frame_Shift_Del p.D328Mfs*6 0.08 TCGA-D8-A27V-01 14 24572939 24572939 G - PCK2 Frame_Shift_Del p.E565Rfs*26 0.17 TCGA-D8-A27V-01 14 24607787 24607787 G - PSME1 Frame_Shift_Del p.G230Afs*15 0.11 TCGA-D8-A27V-01 14 24770877 24770877 T - NOP9 Frame_Shift_Del p.L254* 0.08 TCGA-D8-A27V-01 14 24900872 24900872 A - KHNYN Frame_Shift_Del p.E136Kfs*7 0.15 TCGA-D8-A27V-01 14 28734010 28734010 C - BNIP3P1 RNA 0.10 TCGA-D8-A27V-01 14 30105584 30105584 C - PRKD1 Frame_Shift_Del p.A368Qfs*40 0.09 TCGA-D8-A27V-01 14 31775953 31775953 T - AL136418.1 5'Flank 0.09 TCGA-D8-A27V-01 14 35074876 35074876 T - SNX6 Frame_Shift_Del p.K118Nfs*12 0.08 TCGA-D8-A27V-01 14 36217838 36217838 A - RALGAPA1 Frame_Shift_Del p.S402Lfs*7 0.15 TCGA-D8-A27V-01 14 39819399 39819399 C - CTAGE5 Frame_Shift_Del p.S789Qfs*3 0.12 TCGA-D8-A27V-01 14 45700438 45700438 G - MIS18BP1 Frame_Shift_Del p.D500Efs*2 0.08 TCGA-D8-A27V-01 14 50246999 50246999 T - KLHDC2 Frame_Shift_Del p.L283Sfs*12 0.08 TCGA-D8-A27V-01 14 50907143 50907143 A - MAP4K5 Frame_Shift_Del p.F527Lfs*10 0.11 TCGA-D8-A27V-01 14 51221311 51221311 A - NIN Frame_Shift_Del p.Q1569Rfs*7 0.10 TCGA-D8-A27V-01 14 52466512 52466512 A - C14orf166 Frame_Shift_Del p.K154Rfs*11 0.10 TCGA-D8-A27V-01 14 52906054 52906054 G - TXNDC16 Frame_Shift_Del p.L688Ffs*7 0.10 TCGA-D8-A27V-01 14 52922119 52922119 T - TXNDC16 Frame_Shift_Del p.I589* 0.10 TCGA-D8-A27V-01 14 53100594 53100594 T - GPR137C Frame_Shift_Del p.F349Sfs*36 0.15 TCGA-D8-A27V-01 14 53619247 53619247 G C DDHD1 Missense_Mutation p.I190M 0.11 deleterious(0.05) possibly_damaging(0.869) TCGA-D8-A27V-01 14 55818543 55818543 C T FBXO34 Missense_Mutation p.P479S 0.29 deleterious(0) probably_damaging(0.999) TCGA-D8-A27V-01 14 55903337 55903337 T - TBPL2 Frame_Shift_Del p.T184Lfs*3 0.11 TCGA-D8-A27V-01 14 58796856 58796856 A - ARID4A Frame_Shift_Del p.K293Rfs*85 0.10 TCGA-D8-A27V-01 14 58955427 58955427 T - KIAA0586 Frame_Shift_Del p.P1260Lfs*24 0.10 TCGA-D8-A27V-01 14 64593163 64593163 G - SYNE2 Frame_Shift_Del p.E4559Rfs*17 0.10 TCGA-D8-A27V-01 14 67940256 67940256 G - TMEM229B Frame_Shift_Del p.L129Sfs*29 0.14 TCGA-D8-A27V-01 14 68191197 68191197 T - RDH12 Frame_Shift_Del p.F26Lfs*16 0.11 TCGA-D8-A27V-01 14 69701445 69701445 T - EXD2 Frame_Shift_Del p.S250Qfs*48 0.13 TCGA-D8-A27V-01 14 69989090 69989090 A - PLEKHD1 Frame_Shift_Del p.K216Rfs*6 0.08 TCGA-D8-A27V-01 14 70989447 70989447 T - ADAM20 Frame_Shift_Del p.P727Lfs*9 0.11 TCGA-D8-A27V-01 14 71197227 71197227 G - MAP3K9 Frame_Shift_Del p.P1076Rfs*27 0.13 TCGA-D8-A27V-01 14 71206834 71206834 T - MAP3K9 Frame_Shift_Del p.R539Gfs*26 0.10 TCGA-D8-A27V-01 14 71478249 71478249 T - PCNX Frame_Shift_Del p.Y922Ifs*13 0.09 TCGA-D8-A27V-01 14 71479826 71479826 A - PCNX Frame_Shift_Del p.K969Rfs*40 0.12 TCGA-D8-A27V-01 14 71502835 71502835 T - PCNX Frame_Shift_Del p.F1277Lfs*5 0.10 TCGA-D8-A27V-01 14 72128104 72128104 A - SIPA1L1 Frame_Shift_Del p.N727Tfs*62 0.09 TCGA-D8-A27V-01 14 73219976 73219976 T - DPF3 Frame_Shift_Del p.K99Nfs*8 0.12 TCGA-D8-A27V-01 14 73442376 73442376 C - ZFYVE1 Frame_Shift_Del p.M564* 0.10 TCGA-D8-A27V-01 14 74008297 74008297 G - ACOT1 Frame_Shift_Del p.A187Lfs*26 0.08 TCGA-D8-A27V-01 14 74409102 74409102 G - FAM161B Frame_Shift_Del p.C478Vfs*26 0.09 TCGA-D8-A27V-01 14 74409122 74409122 G - FAM161B Frame_Shift_Del p.L471Cfs*33 0.09 TCGA-D8-A27V-01 14 75276212 75276212 C - YLPM1 Frame_Shift_Del p.P1551Lfs*11 0.08 TCGA-D8-A27V-01 14 75282956 75282956 A - YLPM1 Frame_Shift_Del p.K1852Nfs*8 0.09 TCGA-D8-A27V-01 14 75355826 75355826 T - DLST Frame_Shift_Del p.F60Sfs*63 0.09 TCGA-D8-A27V-01 14 76045441 76045441 C - FLVCR2 Frame_Shift_Del p.S44Afs*15 0.10 TCGA-D8-A27V-01 14 77491832 77491832 C - IRF2BPL Frame_Shift_Del p.S769Rfs*16 0.14 TCGA-D8-A27V-01 14 77703019 77703019 A - TMEM63C Frame_Shift_Del p.N199Tfs*24 0.09 TCGA-D8-A27V-01 14 77795535 77795535 G - GSTZ1 Frame_Shift_Del p.G138Afs*18 0.11 TCGA-D8-A27V-01 14 78140238 78140238 T - ALKBH1 Frame_Shift_Del p.R363Efs*18 0.10 TCGA-D8-A27V-01 14 79270136 79270136 G - NRXN3 Frame_Shift_Del p.R369Vfs*8 0.10 TCGA-D8-A27V-01 14 79746664 79746664 C - NRXN3 Intron 0.10 TCGA-D8-A27V-01 14 81969228 81969228 C A SEL1L Splice_Site p.X205_splice 0.27 TCGA-D8-A27V-01 14 88970819 88970819 T - PTPN21 Frame_Shift_Del p.V180Yfs*32 0.08 TCGA-D8-A27V-01 14 90726504 90726504 A - PSMC1 Frame_Shift_Del p.K36Rfs*17 0.09 TCGA-D8-A27V-01 14 91084275 91084275 G - TTC7B Frame_Shift_Del p.S623Vfs*10 0.08 TCGA-D8-A27V-01 14 91161854 91161854 T - TTC7B Frame_Shift_Del p.N256Tfs*4 0.09 TCGA-D8-A27V-01 14 91626694 91626694 T - C14orf159 Frame_Shift_Del p.L20Yfs*95 0.09 TCGA-D8-A27V-01 14 91747817 91747817 G - CCDC88C Frame_Shift_Del p.N1562Tfs*12 0.08 TCGA-D8-A27V-01 14 92477357 92477357 T - TRIP11 Frame_Shift_Del p.E430Rfs*5 0.10 TCGA-D8-A27V-01 14 92563069 92563069 C G ATXN3 Missense_Mutation p.M46I 0.18 tolerated(0.33) benign(0.002) TCGA-D8-A27V-01 14 93176040 93176040 C - LGMN Frame_Shift_Del p.E333Rfs*70 0.10 TCGA-D8-A27V-01 14 93264157 93264157 T - GOLGA5 Frame_Shift_Del p.N128Ifs*34 0.10 TCGA-D8-A27V-01 14 93581470 93581470 C - ITPK1 Frame_Shift_Del p.W13Cfs*2 0.12 TCGA-D8-A27V-01 14 95034599 95034599 A - SERPINA4 Frame_Shift_Del p.K353Nfs*54 0.09 TCGA-D8-A27V-01 14 95942143 95942143 G - SYNE3 Frame_Shift_Del p.Q6Rfs*15 0.08 TCGA-D8-A27V-01 14 96770878 96770878 C - ATG2B Frame_Shift_Del p.G1599Efs*9 0.09 TCGA-D8-A27V-01 15 20645801 20645801 G - HERC2P3 RNA 0.09 TCGA-D8-A27V-01 15 22933580 22933580 A - CYFIP1 Frame_Shift_Del p.M198Wfs*33 0.09 TCGA-D8-A27V-01 15 28483280 28483280 A - HERC2 Frame_Shift_Del p.C1278Vfs*25 0.08 TCGA-D8-A27V-01 15 31358350 31358350 C - TRPM1 Frame_Shift_Del p.G257Afs*7 0.08 TCGA-D8-A27V-01 15 31362364 31362364 T - TRPM1 Frame_Shift_Del p.N67Mfs*62 0.08 TCGA-D8-A27V-01 15 32455439 32455439 C - CHRNA7 Frame_Shift_Del p.S328Afs*3 0.10 TCGA-D8-A27V-01 15 33357208 33357208 G - FMN1 Frame_Shift_Del p.P481Qfs*12 0.09 TCGA-D8-A27V-01 15 33855179 33855179 A - RYR3 Frame_Shift_Del p.T373Lfs*7 0.12 TCGA-D8-A27V-01 15 33999210 33999210 G - RYR3 Frame_Shift_Del p.E2193Nfs*7 0.09 TCGA-D8-A27V-01 15 34077921 34077921 C - RYR3 Frame_Shift_Del p.L3110* 0.14 TCGA-D8-A27V-01 15 34158896 34158896 T - AVEN Frame_Shift_Del p.N336Tfs*25 0.08 TCGA-D8-A27V-01 15 37329067 37329067 A - MEIS2 Frame_Shift_Del p.F283Sfs*4 0.10 TCGA-D8-A27V-01 15 38795505 38795505 T - RASGRP1 Frame_Shift_Del p.T466Pfs*43 0.10 TCGA-D8-A27V-01 15 38990610 38990610 T - C15orf53 Frame_Shift_Del p.P136Lfs*49 0.12 TCGA-D8-A27V-01 15 40630990 40630990 C - C15orf52 Frame_Shift_Del p.E160Sfs*7 0.08 TCGA-D8-A27V-01 15 41065971 41065971 C - DNAJC17 Frame_Shift_Del p.G249Dfs*30 0.10 TCGA-D8-A27V-01 15 41068758 41068758 G - DNAJC17 Frame_Shift_Del p.R122Gfs*3 0.08 TCGA-D8-A27V-01 15 41068776 41068776 T - DNAJC17 Frame_Shift_Del p.E116Rfs*9 0.09 TCGA-D8-A27V-01 15 41191490 41191490 C - VPS18 Frame_Shift_Del p.I160Sfs*37 0.09 TCGA-D8-A27V-01 15 41571069 41571069 T - CHP1 Frame_Shift_Del p.F173Sfs*13 0.09 TCGA-D8-A27V-01 15 42105206 42105206 A - MAPKBP1 Frame_Shift_Del p.K244Rfs*29 0.14 TCGA-D8-A27V-01 15 42115775 42115775 C - MAPKBP1 Frame_Shift_Del p.T1251Pfs*84 0.13 TCGA-D8-A27V-01 15 42127400 42127400 C - JMJD7-PLA2G4B Frame_Shift_Del p.W152Gfs*13 0.11 TCGA-D8-A27V-01 15 42173270 42173270 A G SPTBN5 Silent p.L874L 0.30 TCGA-D8-A27V-01 15 42454593 42454593 T - VPS39 Frame_Shift_Del p.A755Pfs*65 0.09 TCGA-D8-A27V-01 15 42483704 42483704 T - VPS39 Frame_Shift_Del p.K65Rfs*18 0.12 TCGA-D8-A27V-01 15 42702790 42702790 T - CAPN3 Frame_Shift_Del p.F731Sfs*45 0.11 TCGA-D8-A27V-01 15 43009979 43009979 A - STARD9 Frame_Shift_Del p.T4516Lfs*66 0.09 TCGA-D8-A27V-01 15 43022406 43022406 C - CDAN1 Frame_Shift_Del p.V728Cfs*13 0.08 TCGA-D8-A27V-01 15 43724449 43724449 C - TP53BP1 Frame_Shift_Del p.S1207Vfs*39 0.09 TCGA-D8-A27V-01 15 43814077 43814077 T - MAP1A Frame_Shift_Del p.F137Sfs*30 0.09 TCGA-D8-A27V-01 15 43891441 43891441 C - CKMT1B Frame_Shift_Del p.T410Hfs*? 0.08 TCGA-D8-A27V-01 15 44058966 44058966 A - PDIA3 Frame_Shift_Del p.K296Nfs*6 0.10 TCGA-D8-A27V-01 15 44092790 44092790 G - HYPK 5'UTR 0.10 TCGA-D8-A27V-01 15 44143414 44143414 G - WDR76 Frame_Shift_Del p.D389Ifs*31 0.08 TCGA-D8-A27V-01 15 45408003 45408003 T - DUOXA2 Frame_Shift_Del p.W53Gfs*3 0.09 TCGA-D8-A27V-01 15 48441481 48441481 G - MYEF2 Frame_Shift_Del p.P489Qfs*3 0.10 TCGA-D8-A27V-01 15 48450997 48450997 A - MYEF2 Frame_Shift_Del p.F280Lfs*26 0.09 TCGA-D8-A27V-01 15 48543854 48543854 T - SLC12A1 Frame_Shift_Del p.F611Lfs*32 0.08 TCGA-D8-A27V-01 15 48717998 48717998 C T FBN1 Missense_Mutation p.G2423E 0.24 probably_damaging(1) TCGA-D8-A27V-01 15 49320786 49320786 G - SECISBP2L Frame_Shift_Del p.P253Lfs*37 0.09 TCGA-D8-A27V-01 15 50866888 50866888 T - TRPM7 Frame_Shift_Del p.K1683Sfs*9 0.09 TCGA-D8-A27V-01 15 50905959 50905959 T - TRPM7 Frame_Shift_Del p.K572Rfs*4 0.10 TCGA-D8-A27V-01 15 51687138 51687138 G - GLDN Frame_Shift_Del p.G217Vfs*87 0.12 TCGA-D8-A27V-01 15 51742446 51742446 A - DMXL2 Frame_Shift_Del p.F2928Lfs*40 0.13 TCGA-D8-A27V-01 15 51773540 51773540 T - DMXL2 Frame_Shift_Del p.D1922Ifs*20 0.09 TCGA-D8-A27V-01 15 51973895 51973895 A - SCG3 5'UTR 0.20 TCGA-D8-A27V-01 15 51991561 51991561 A - SCG3 Frame_Shift_Del p.N346Mfs*6 0.11 TCGA-D8-A27V-01 15 52339070 52339070 G - MAPK6 Frame_Shift_Del p.L140Sfs*28 0.10 TCGA-D8-A27V-01 15 52439702 52439702 C - GNB5 Frame_Shift_Del p.V150* 0.11 TCGA-D8-A27V-01 15 52638613 52638613 T - MYO5A Frame_Shift_Del p.M1302* 0.11 TCGA-D8-A27V-01 15 52905944 52905944 T - FAM214A Frame_Shift_Del p.S43Afs*13 0.09 TCGA-D8-A27V-01 15 55497727 55497727 T - RAB27A Frame_Shift_Del p.E215Gfs*27 0.09 TCGA-D8-A27V-01 15 55652568 55652568 T - CCPG1 Frame_Shift_Del p.K468Rfs*29 0.08 TCGA-D8-A27V-01 15 55933367 55933367 T - PRTG Frame_Shift_Del p.N694Tfs*3 0.08 TCGA-D8-A27V-01 15 56394424 56394424 T - RFX7 Frame_Shift_Del p.A183Lfs*52 0.08 TCGA-D8-A27V-01 15 57524926 57524926 C G TCF12 Nonsense_Mutation p.S281* 0.22 TCGA-D8-A27V-01 15 59179629 59179629 T - SLTM Frame_Shift_Del p.N829Mfs*28 0.08 TCGA-D8-A27V-01 15 59181666 59181666 T - SLTM Frame_Shift_Del p.R723Gfs*4 0.08 TCGA-D8-A27V-01 15 62302728 62302728 G - VPS13C Frame_Shift_Del p.K319Nfs*6 0.08 TCGA-D8-A27V-01 15 63904630 63904630 T - HERC1 Frame_Shift_Del p.V4741Wfs*33 0.09 TCGA-D8-A27V-01 15 63935169 63935169 G C HERC1 Nonsense_Mutation p.S3807* 0.33 TCGA-D8-A27V-01 15 63946438 63946438 T - HERC1 Frame_Shift_Del p.Q3390Hfs*42 0.09 TCGA-D8-A27V-01 15 64005045 64005045 A - HERC1 Frame_Shift_Del p.Y1505Ifs*3 0.14 TCGA-D8-A27V-01 15 65295429 65295429 T - MTFMT Frame_Shift_Del p.T381Lfs*11 0.09 TCGA-D8-A27V-01 15 65946254 65946254 T - SLC24A1 Frame_Shift_Del p.L1047Cfs*9 0.09 TCGA-D8-A27V-01 15 66034090 66034090 T - DENND4A Frame_Shift_Del p.K198Nfs*15 0.08 TCGA-D8-A27V-01 15 66191215 66191215 T - MEGF11 Frame_Shift_Del p.N942Tfs*22 0.13 TCGA-D8-A27V-01 15 66621447 66621447 G A DIS3L Missense_Mutation p.E781K 0.20 deleterious(0.03) benign(0.403) TCGA-D8-A27V-01 15 66792470 66792470 T - RPL4 Frame_Shift_Del p.N321Tfs*2 0.10 TCGA-D8-A27V-01 15 66845480 66845480 G A LCTL Missense_Mutation p.R347W 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A27V-01 15 66855908 66855908 A - LCTL Frame_Shift_Del p.L143* 0.09 TCGA-D8-A27V-01 15 67768110 67768110 T - IQCH Frame_Shift_Del p.L920Sfs*27 0.08 TCGA-D8-A27V-01 15 68609624 68609624 G - ITGA11 Frame_Shift_Del p.F899Sfs*67 0.15 TCGA-D8-A27V-01 15 69223015 69223015 T - SPESP1 Frame_Shift_Del p.A9Rfs*15 0.09 TCGA-D8-A27V-01 15 71197087 71197087 A - LRRC49 Frame_Shift_Del p.N171Tfs*12 0.10 TCGA-D8-A27V-01 15 72030274 72030274 C - THSD4 Frame_Shift_Del p.P613Hfs*50 0.08 TCGA-D8-A27V-01 15 72559942 72559942 G A PARP6 5'UTR 0.24 TCGA-D8-A27V-01 15 74743196 74743196 A - UBL7 Frame_Shift_Del p.L160Sfs*37 0.13 TCGA-D8-A27V-01 15 74922124 74922124 C - CLK3 Frame_Shift_Del p.Q607Sfs*17 0.08 TCGA-D8-A27V-01 15 75111560 75111560 T - LMAN1L Frame_Shift_Del p.L223Wfs*26 0.10 TCGA-D8-A27V-01 15 75134490 75134490 C - ULK3 Frame_Shift_Del p.G97Afs*25 0.10 TCGA-D8-A27V-01 15 75500433 75500433 C - C15orf39 Frame_Shift_Del p.T683Pfs*19 0.10 TCGA-D8-A27V-01 15 75632340 75632340 G - COMMD4 Frame_Shift_Del p.G199Afs*22 0.10 TCGA-D8-A27V-01 15 75664494 75664494 T - SIN3A Frame_Shift_Del p.K1216Nfs*42 0.09 TCGA-D8-A27V-01 15 76183300 76183300 A - UBE2Q2 Frame_Shift_Del p.I326* 0.08 TCGA-D8-A27V-01 15 76646396 76646396 A - SCAPER Frame_Shift_Del p.I1314Tfs*26 0.09 TCGA-D8-A27V-01 15 77046170 77046170 T - SCAPER Frame_Shift_Del p.A616Hfs*8 0.08 TCGA-D8-A27V-01 15 77064140 77064140 T - SCAPER Frame_Shift_Del p.K397Nfs*9 0.08 TCGA-D8-A27V-01 15 78390363 78390363 C - SH2D7 Frame_Shift_Del p.A120Vfs*19 0.08 TCGA-D8-A27V-01 15 78474328 78474328 C T ACSBG1 Missense_Mutation p.E352K 0.29 deleterious(0.01) possibly_damaging(0.513) TCGA-D8-A27V-01 15 78755395 78755395 T - IREB2 Frame_Shift_Del p.F81Sfs*22 0.09 TCGA-D8-A27V-01 15 78780591 78780591 C T IREB2 Missense_Mutation p.R622C 0.23 deleterious(0.05) benign(0.047) TCGA-D8-A27V-01 15 79083055 79083055 C - ADAMTS7 Frame_Shift_Del p.D329Mfs*22 0.09 TCGA-D8-A27V-01 15 79215401 79215401 C - CTSH Frame_Shift_Del p.G289Efs*11 0.08 TCGA-D8-A27V-01 15 79350705 79350705 C - RASGRF1 Frame_Shift_Del p.E168Rfs*7 0.16 TCGA-D8-A27V-01 15 80750307 80750307 A - ARNT2 Frame_Shift_Del p.K62Nfs*18 0.10 TCGA-D8-A27V-01 15 80873669 80873669 C - ARNT2 Frame_Shift_Del p.L616Sfs*211 0.12 TCGA-D8-A27V-01 15 81627189 81627189 C - TMC3 Frame_Shift_Del p.S778Afs*7 0.09 TCGA-D8-A27V-01 15 84558961 84558961 A - ADAMTSL3 Frame_Shift_Del p.K392Nfs*2 0.09 TCGA-D8-A27V-01 15 84561476 84561476 G - ADAMTSL3 Frame_Shift_Del p.G435Efs*12 0.10 TCGA-D8-A27V-01 15 85223967 85223967 T - SEC11A Frame_Shift_Del p.D137Mfs*16 0.11 TCGA-D8-A27V-01 15 89416148 89416148 T - ACAN Frame_Shift_Del p.F2410Lfs*9 0.10 TCGA-D8-A27V-01 15 90245248 90245248 C - WDR93 Frame_Shift_Del p.T92Pfs*62 0.09 TCGA-D8-A27V-01 15 90347777 90347777 G - ANPEP Frame_Shift_Del p.I324Sfs*37 0.13 TCGA-D8-A27V-01 15 90437159 90437159 A - AP3S2 Frame_Shift_Del p.F8Sfs*9 0.10 TCGA-D8-A27V-01 15 90446512 90446512 T - C15orf38-AP3S2 Frame_Shift_Del p.K203Sfs*37 0.09 TCGA-D8-A27V-01 15 90764226 90764226 T - SEMA4B Frame_Shift_Del p.F166Sfs*163 0.10 TCGA-D8-A27V-01 15 90799091 90799091 C - TTLL13 Frame_Shift_Del p.R176Afs*52 0.11 TCGA-D8-A27V-01 15 91290621 91290621 T - BLM Intron 0.09 TCGA-D8-A27V-01 15 91449641 91449641 G - MAN2A2 Frame_Shift_Del p.V251* 0.09 TCGA-D8-A27V-01 15 91453346 91453346 T - MAN2A2 Frame_Shift_Del p.F468Lfs*22 0.10 TCGA-D8-A27V-01 15 91832792 91832792 T - SV2B Frame_Shift_Del p.F585Lfs*8 0.08 TCGA-D8-A27V-01 15 93277246 93277246 C - RP11-386M24.4 RNA 0.10 TCGA-D8-A27V-01 15 93486182 93486182 G - CHD2 Frame_Shift_Del p.G313Vfs*20 0.10 TCGA-D8-A27V-01 15 99442809 99442809 A - IGF1R Frame_Shift_Del p.N404Tfs*6 0.11 TCGA-D8-A27V-01 15 99671438 99671438 A - SYNM Frame_Shift_Del p.T958Pfs*6 0.13 TCGA-D8-A27V-01 16 10783809 10783809 T - TEKT5 Frame_Shift_Del p.N213Tfs*9 0.12 TCGA-D8-A27V-01 16 10850631 10850631 A - NUBP1 Frame_Shift_Del p.N150Tfs*3 0.09 TCGA-D8-A27V-01 16 1129627 1129627 G - SSTR5 Frame_Shift_Del p.V254Cfs*137 0.08 TCGA-D8-A27V-01 16 11369735 11369735 G - PRM2 3'UTR 0.12 TCGA-D8-A27V-01 16 11966966 11966966 A - GSPT1 3'UTR 0.11 TCGA-D8-A27V-01 16 1375162 1375162 G - UBE2I 3'UTR 0.14 TCGA-D8-A27V-01 16 14311099 14311099 A - MKL2 Frame_Shift_Del p.N158Tfs*14 0.09 TCGA-D8-A27V-01 16 14312794 14312794 C - MKL2 Frame_Shift_Del p.P212Qfs*13 0.09 TCGA-D8-A27V-01 16 14340886 14340886 A - MKL2 Frame_Shift_Del p.E591Sfs*8 0.10 TCGA-D8-A27V-01 16 14647955 14647955 T - PARN Frame_Shift_Del p.T458Pfs*34 0.08 TCGA-D8-A27V-01 16 1493974 1493974 G A CCDC154 Missense_Mutation p.S16F 0.20 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-D8-A27V-01 16 15814088 15814088 C - MYH11 Frame_Shift_Del p.D1632Tfs*2 0.09 TCGA-D8-A27V-01 16 15835366 15835366 C - MYH11 Frame_Shift_Del p.G945Afs*74 0.09 TCGA-D8-A27V-01 16 15844106 15844106 C - MYH11 Frame_Shift_Del p.M656Ifs*16 0.08 TCGA-D8-A27V-01 16 15851726 15851726 A - MYH11 Frame_Shift_Del p.F518Lfs*82 0.15 TCGA-D8-A27V-01 16 15932054 15932054 T - MYH11 Frame_Shift_Del p.N19Tfs*61 0.09 TCGA-D8-A27V-01 16 16200673 16200673 G - ABCC1 Frame_Shift_Del p.A939Pfs*9 0.10 TCGA-D8-A27V-01 16 16355482 16355482 T - NOMO3 Frame_Shift_Del p.D448Efs*19 0.08 TCGA-D8-A27V-01 16 17211800 17211800 G A XYLT1 Missense_Mutation p.R754C 0.20 deleterious(0) probably_damaging(1) TCGA-D8-A27V-01 16 18823126 18823126 C - SMG1 Frame_Shift_Del p.G3622Afs*26 0.09 TCGA-D8-A27V-01 16 18844425 18844425 C - SMG1 Frame_Shift_Del p.E2877Nfs*4 0.08 TCGA-D8-A27V-01 16 19085273 19085273 A - COQ7 Frame_Shift_Del p.K96Sfs*5 0.09 TCGA-D8-A27V-01 16 20322585 20322585 G - GP2 Frame_Shift_Del p.P525Lfs*5 0.10 TCGA-D8-A27V-01 16 20355466 20355466 T - UMOD Frame_Shift_Del p.N404Tfs*28 0.09 TCGA-D8-A27V-01 16 2052610 2052610 G - ZNF598 Frame_Shift_Del p.L197Wfs*149 0.11 TCGA-D8-A27V-01 16 20554499 20554499 A - ACSM2B Frame_Shift_Del p.F456Sfs*23 0.08 TCGA-D8-A27V-01 16 2096334 2096334 G - NTHL1 Frame_Shift_Del p.P58Rfs*45 0.10 TCGA-D8-A27V-01 16 21031032 21031032 A - DNAH3 Frame_Shift_Del p.F1979Sfs*4 0.08 TCGA-D8-A27V-01 16 2235343 2235343 G - CASKIN1 Frame_Shift_Del p.P372Qfs*7 0.15 TCGA-D8-A27V-01 16 23080399 23080399 G - USP31 Frame_Shift_Del p.S1010Afs*55 0.10 TCGA-D8-A27V-01 16 23099110 23099110 C - USP31 Frame_Shift_Del p.D488Tfs*11 0.09 TCGA-D8-A27V-01 16 24373097 24373097 T - CACNG3 Frame_Shift_Del p.L289Yfs*66 0.09 TCGA-D8-A27V-01 16 24922838 24922838 G - SLC5A11 Frame_Shift_Del p.G672Afs*8 0.09 TCGA-D8-A27V-01 16 25238388 25238388 G - AQP8 Splice_Site p.X202_splice 0.09 TCGA-D8-A27V-01 16 25255208 25255208 C T ZKSCAN2 Missense_Mutation p.E627K 0.21 deleterious(0.03) benign(0.424) TCGA-D8-A27V-01 16 2815374 2815374 G A SRRM2 Silent p.Q1615Q 0.26 TCGA-D8-A27V-01 16 28499967 28499967 G A CLN3 Missense_Mutation p.T80M 0.19 tolerated(0.11) benign(0.051) TCGA-D8-A27V-01 16 28892285 28892285 A - ATP2A1 Frame_Shift_Del p.E90Dfs*7 0.08 TCGA-D8-A27V-01 16 28913243 28913243 G - ATP2A1 Frame_Shift_Del p.G721Dfs*24 0.10 TCGA-D8-A27V-01 16 28925998 28925998 T - RABEP2 Frame_Shift_Del p.I180Sfs*34 0.11 TCGA-D8-A27V-01 16 2906084 2906084 C - PRSS22 Frame_Shift_Del p.D94Tfs*3 0.08 TCGA-D8-A27V-01 16 29791638 29791638 C - ZG16 Frame_Shift_Del p.N136Tfs*80 0.09 TCGA-D8-A27V-01 16 2988210 2988210 G C FLYWCH1 Silent p.L600L 0.20 TCGA-D8-A27V-01 16 29917112 29917112 C - ASPHD1 Frame_Shift_Del p.E358Kfs*78 0.09 TCGA-D8-A27V-01 16 3021331 3021331 C T PAQR4 Missense_Mutation p.R114W 0.26 tolerated(0.06) probably_damaging(0.935) TCGA-D8-A27V-01 16 30369341 30369341 T - TBC1D10B Frame_Shift_Del p.K784Rfs*127 0.10 TCGA-D8-A27V-01 16 30664363 30664363 C - PRR14 Frame_Shift_Del p.Q150Sfs*6 0.08 TCGA-D8-A27V-01 16 30676085 30676085 G - FBRS Frame_Shift_Del p.G470Vfs*131 0.09 TCGA-D8-A27V-01 16 30724910 30724910 T - SRCAP Frame_Shift_Del p.L792* 0.13 TCGA-D8-A27V-01 16 30768329 30768329 C - PHKG2 Frame_Shift_Del p.P379Lfs*18 0.08 TCGA-D8-A27V-01 16 30779800 30779800 A - RNF40 Frame_Shift_Del p.T644Pfs*26 0.10 TCGA-D8-A27V-01 16 31196315 31196315 T - FUS Frame_Shift_Del p.Y194Mfs*128 0.08 TCGA-D8-A27V-01 16 31340573 31340573 C G ITGAM Silent p.L940L 0.21 TCGA-D8-A27V-01 16 31435460 31435460 A - ITGAD Frame_Shift_Del p.I1067Lfs*18 0.09 TCGA-D8-A27V-01 16 3639699 3639699 G - SLX4 Frame_Shift_Del p.Q1314Rfs*61 0.10 TCGA-D8-A27V-01 16 3640850 3640850 G - SLX4 Frame_Shift_Del p.P930Hfs*71 0.16 TCGA-D8-A27V-01 16 3656668 3656668 A - SLX4 Frame_Shift_Del p.P190Lfs*4 0.10 TCGA-D8-A27V-01 16 3714308 3714308 G - TRAP1 Frame_Shift_Del p.Y513Tfs*5 0.17 TCGA-D8-A27V-01 16 3779476 3779476 G - CREBBP Frame_Shift_Del p.R1858Afs*15 0.13 TCGA-D8-A27V-01 16 3781775 3781775 A - CREBBP Splice_Site p.X1630_splice 0.11 TCGA-D8-A27V-01 16 3781811 3781811 T - CREBBP Frame_Shift_Del p.Q1619Rfs*16 0.08 TCGA-D8-A27V-01 16 3781890 3781890 T - CREBBP Frame_Shift_Del p.T1593Pfs*42 0.14 TCGA-D8-A27V-01 16 3831253 3831253 G - CREBBP Frame_Shift_Del p.P543Qfs*3 0.09 TCGA-D8-A27V-01 16 4016107 4016107 T - ADCY9 Frame_Shift_Del p.K1244Sfs*85 0.08 TCGA-D8-A27V-01 16 4165315 4165315 G - ADCY9 Frame_Shift_Del p.K44Sfs*55 0.08 TCGA-D8-A27V-01 16 4649361 4649361 C - C16orf96 Frame_Shift_Del p.L1071Cfs*16 0.10 TCGA-D8-A27V-01 16 46934632 46934632 C - GPT2 Frame_Shift_Del p.S126Afs*58 0.15 TCGA-D8-A27V-01 16 4827944 4827944 G - SEPT12 Frame_Shift_Del p.R311Afs*18 0.09 TCGA-D8-A27V-01 16 5123166 5123166 T - ALG1 Frame_Shift_Del p.F101Sfs*18 0.09 TCGA-D8-A27V-01 16 52473651 52473651 T - TOX3 Frame_Shift_Del p.N406Tfs*10 0.09 TCGA-D8-A27V-01 16 53256612 53256612 A - CHD9 Frame_Shift_Del p.I615Yfs*12 0.14 TCGA-D8-A27V-01 16 53679754 53679754 A - RPGRIP1L Frame_Shift_Del p.F822Lfs*27 0.12 TCGA-D8-A27V-01 16 53692705 53692705 T - RPGRIP1L Frame_Shift_Del p.K443Nfs*3 0.08 TCGA-D8-A27V-01 16 53878177 53878177 C - FTO Frame_Shift_Del p.L289Ffs*68 0.12 TCGA-D8-A27V-01 16 53967929 53967929 G - FTO Frame_Shift_Del p.L426Sfs*10 0.13 TCGA-D8-A27V-01 16 55536793 55536793 G - MMP2 Frame_Shift_Del p.G625Afs*14 0.11 TCGA-D8-A27V-01 16 55600648 55600648 T - CAPNS2 5'UTR 0.12 TCGA-D8-A27V-01 16 55897295 55897295 A - CES5A Frame_Shift_Del p.Y288Tfs*31 0.09 TCGA-D8-A27V-01 16 56388779 56388779 C - RP11-441F2.5 5'Flank 0.14 TCGA-D8-A27V-01 16 56501099 56501099 A - OGFOD1 Frame_Shift_Del p.K228Sfs*6 0.14 TCGA-D8-A27V-01 16 56642573 56642573 T - MT2A Frame_Shift_Del p.N4Tfs*96 0.08 TCGA-D8-A27V-01 16 56920276 56920276 C - SLC12A3 Frame_Shift_Del p.Q644Sfs*28 0.16 TCGA-D8-A27V-01 16 56974072 56974072 T - HERPUD1 Frame_Shift_Del p.S275Lfs*13 0.08 TCGA-D8-A27V-01 16 57073703 57073703 A - NLRC5 Frame_Shift_Del p.T939Lfs*2 0.12 TCGA-D8-A27V-01 16 57115466 57115466 G - NLRC5 Frame_Shift_Del p.A1813Pfs*32 0.17 TCGA-D8-A27V-01 16 57144765 57144765 C - CPNE2 Frame_Shift_Del p.R38Gfs*97 0.16 TCGA-D8-A27V-01 16 57449039 57449039 G - CCL17 Frame_Shift_Del p.G40Efs*8 0.09 TCGA-D8-A27V-01 16 57992325 57992325 T - CNGB1 Frame_Shift_Del p.I276* 0.16 TCGA-D8-A27V-01 16 58426568 58426568 T - GINS3 Frame_Shift_Del p.L22Wfs*5 0.17 TCGA-D8-A27V-01 16 58559176 58559176 G - CNOT1 Frame_Shift_Del p.H2231Tfs*9 0.12 TCGA-D8-A27V-01 16 66861902 66861902 T - NAE1 Intron 0.09 TCGA-D8-A27V-01 16 66919097 66919097 C - PDP2 Frame_Shift_Del p.T306Hfs*15 0.11 TCGA-D8-A27V-01 16 67229899 67229899 C - E2F4 Frame_Shift_Del p.T343Qfs*21 0.13 TCGA-D8-A27V-01 16 67409289 67409289 C - LRRC36 Frame_Shift_Del p.L546Sfs*19 0.10 TCGA-D8-A27V-01 16 67429420 67429420 G - ZDHHC1 Frame_Shift_Del p.P326Lfs*9 0.13 TCGA-D8-A27V-01 16 67915024 67915024 C - EDC4 Frame_Shift_Del p.R860Dfs*94 0.23 TCGA-D8-A27V-01 16 68248309 68248309 C - NFATC3 Intron 0.08 TCGA-D8-A27V-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.31 TCGA-D8-A27V-01 16 68909129 68909129 T - TANGO6 Frame_Shift_Del p.L357Wfs*32 0.13 TCGA-D8-A27V-01 16 69191067 69191067 A - CIRH1A Frame_Shift_Del p.N457Ifs*43 0.09 TCGA-D8-A27V-01 16 697461 697461 C - FAM195A Frame_Shift_Del p.S78Pfs*67 0.08 TCGA-D8-A27V-01 16 70190512 70190512 C - PDPR Frame_Shift_Del p.R791Gfs*40 0.10 TCGA-D8-A27V-01 16 70293014 70293014 C - AARS Frame_Shift_Del p.E621Kfs*39 0.12 TCGA-D8-A27V-01 16 70365686 70365686 T - DDX19B Frame_Shift_Del p.L362Rfs*2 0.11 TCGA-D8-A27V-01 16 70422363 70422363 T - ST3GAL2 Frame_Shift_Del p.N207Tfs*37 0.15 TCGA-D8-A27V-01 16 70512288 70512288 T - FUK Frame_Shift_Del p.F919Lfs*28 0.12 TCGA-D8-A27V-01 16 70841598 70841598 T - HYDIN Frame_Shift_Del p.N5084Tfs*13 0.09 TCGA-D8-A27V-01 16 70926304 70926304 T - HYDIN Frame_Shift_Del p.K3126Rfs*3 0.09 TCGA-D8-A27V-01 16 71570762 71570762 T - CHST4 Frame_Shift_Del p.F62Lfs*10 0.08 TCGA-D8-A27V-01 16 716929 716929 T - WDR90 Frame_Shift_Del p.F1678Lfs*5 0.10 TCGA-D8-A27V-01 16 71977968 71977968 T - PKD1L3 RNA 0.10 TCGA-D8-A27V-01 16 72184519 72184519 C - PMFBP1 Frame_Shift_Del p.I209Sfs*23 0.10 TCGA-D8-A27V-01 16 72845574 72845574 G - ZFHX3 Frame_Shift_Del p.L1256Cfs*32 0.13 TCGA-D8-A27V-01 16 74511324 74511324 T - GLG1 Frame_Shift_Del p.K645Nfs*30 0.10 TCGA-D8-A27V-01 16 74511415 74511415 C - GLG1 Frame_Shift_Del p.R615Qfs*26 0.11 TCGA-D8-A27V-01 16 74716608 74716608 T - MLKL Frame_Shift_Del p.D300Tfs*10 0.26 TCGA-D8-A27V-01 16 75276945 75276945 G - BCAR1 Frame_Shift_Del p.P65Rfs*12 0.11 TCGA-D8-A27V-01 16 75646504 75646504 G - ADAT1 Frame_Shift_Del p.S227Yfs*11 0.11 TCGA-D8-A27V-01 16 75688251 75688251 A - TERF2IP Frame_Shift_Del p.K252Rfs*26 0.13 TCGA-D8-A27V-01 16 76482686 76482686 T - CNTNAP4 Frame_Shift_Del p.S231Pfs*12 0.09 TCGA-D8-A27V-01 16 76556127 76556127 T - CNTNAP4 Frame_Shift_Del p.L837Yfs*28 0.13 TCGA-D8-A27V-01 16 773872 773872 C - CCDC78 Frame_Shift_Del p.G373Efs*44 0.11 TCGA-D8-A27V-01 16 77398122 77398122 C - ADAMTS18 Frame_Shift_Del p.G312Efs*10 0.10 TCGA-D8-A27V-01 16 775452 775452 T - CCDC78 Frame_Shift_Del p.A133Pfs*20 0.11 TCGA-D8-A27V-01 16 81198344 81198344 G - PKD1L2 RNA 0.15 TCGA-D8-A27V-01 16 81927349 81927349 C - PLCG2 Frame_Shift_Del p.P342Qfs*60 0.13 TCGA-D8-A27V-01 16 83378586 83378586 C - CDH13 Frame_Shift_Del p.H300Tfs*12 0.13 TCGA-D8-A27V-01 16 84900615 84900615 G - CRISPLD2 Frame_Shift_Del p.K274Nfs*11 0.11 TCGA-D8-A27V-01 16 85015537 85015537 C - ZDHHC7 Frame_Shift_Del p.E164Kfs*37 0.08 TCGA-D8-A27V-01 16 87938459 87938459 A - CA5A Frame_Shift_Del p.F131Sfs*6 0.11 TCGA-D8-A27V-01 16 88873858 88873858 T - CDT1 Frame_Shift_Del p.M482Rfs*9 0.13 TCGA-D8-A27V-01 16 89703285 89703285 G - DPEP1 Frame_Shift_Del p.W178Cfs*23 0.14 TCGA-D8-A27V-01 16 89713679 89713679 G - CHMP1A Frame_Shift_Del p.L105Cfs*7 0.16 TCGA-D8-A27V-01 16 8996240 8996240 T - USP7 Frame_Shift_Del p.T647Qfs*2 0.08 TCGA-D8-A27V-01 17 10263312 10263312 C - MYH13 Frame_Shift_Del p.D204Tfs*15 0.09 TCGA-D8-A27V-01 17 10307751 10307751 T - MYH8 Frame_Shift_Del p.T862Pfs*15 0.09 TCGA-D8-A27V-01 17 10357127 10357127 T - MYH4 Frame_Shift_Del p.I923Sfs*4 0.09 TCGA-D8-A27V-01 17 10409371 10409371 G - MYH1 Frame_Shift_Del p.H672Tfs*26 0.09 TCGA-D8-A27V-01 17 10411879 10411879 G A MYH1 Silent p.F566F 0.28 TCGA-D8-A27V-01 17 10547781 10547781 A - MYH3 Frame_Shift_Del p.Y433Mfs*148 0.09 TCGA-D8-A27V-01 17 10728616 10728616 T - PIRT Frame_Shift_Del p.K116Rfs*20 0.09 TCGA-D8-A27V-01 17 12915000 12915000 T - ELAC2 Frame_Shift_Del p.N220Mfs*22 0.09 TCGA-D8-A27V-01 17 13980075 13980075 C - COX10 Frame_Shift_Del p.H68Tfs*5 0.11 TCGA-D8-A27V-01 17 15510930 15510930 T - RP11-385D13.1 Frame_Shift_Del p.N707Mfs*29 0.09 TCGA-D8-A27V-01 17 15517307 15517307 C T RP11-385D13.1 Missense_Mutation p.M547I 0.43 tolerated_low_confidence(0.08) possibly_damaging(0.888) TCGA-D8-A27V-01 17 1554198 1554198 T - PRPF8 Frame_Shift_Del p.E2303Sfs*56 0.09 TCGA-D8-A27V-01 17 1558727 1558727 C - PRPF8 Frame_Shift_Del p.W1968Cfs*4 0.09 TCGA-D8-A27V-01 17 15619505 15619505 T - ZNF286A Frame_Shift_Del p.E157Nfs*6 0.09 TCGA-D8-A27V-01 17 15878382 15878382 T - ADORA2B Frame_Shift_Del p.F243Lfs*30 0.10 TCGA-D8-A27V-01 17 15938142 15938142 A - NCOR1 Frame_Shift_Del p.S2358Qfs*31 0.09 TCGA-D8-A27V-01 17 16120587 16120587 G - PIGL Frame_Shift_Del p.G17Afs*12 0.10 TCGA-D8-A27V-01 17 16285748 16285748 A - UBB Frame_Shift_Del p.N177Mfs*2 0.08 TCGA-D8-A27V-01 17 16725493 16725493 C - AC022596.6 RNA 0.08 TCGA-D8-A27V-01 17 18110261 18110261 G - ALKBH5 Frame_Shift_Del p.A329Qfs*61 0.10 TCGA-D8-A27V-01 17 18154992 18154992 A - FLII Splice_Site p.X461_splice 0.08 TCGA-D8-A27V-01 17 18498058 18498058 T C CCDC144B Intron 0.16 TCGA-D8-A27V-01 17 18542499 18542499 G - TBC1D28 Frame_Shift_Del p.L63Wfs*3 0.09 TCGA-D8-A27V-01 17 18651383 18651383 A - FBXW10 Frame_Shift_Del p.N213Mfs*25 0.11 TCGA-D8-A27V-01 17 18673377 18673377 C - FBXW10 Frame_Shift_Del p.F663Sfs*24 0.09 TCGA-D8-A27V-01 17 19642369 19642369 C - ALDH3A1 Frame_Shift_Del p.V386Wfs*45 0.09 TCGA-D8-A27V-01 17 19866296 19866296 T - AKAP10 Frame_Shift_Del p.N59Ifs*94 0.09 TCGA-D8-A27V-01 17 20363725 20363725 C - LGALS9B Frame_Shift_Del p.G24Vfs*89 0.10 TCGA-D8-A27V-01 17 21092052 21092052 T - DHRS7B Frame_Shift_Del p.F217Sfs*16 0.12 TCGA-D8-A27V-01 17 21094328 21094328 G - DHRS7B Frame_Shift_Del p.K282Rfs*6 0.10 TCGA-D8-A27V-01 17 2290409 2290409 G - MNT Frame_Shift_Del p.P512Rfs*6 0.17 TCGA-D8-A27V-01 17 25621356 25621356 G - WSB1 5'UTR 0.09 TCGA-D8-A27V-01 17 26521669 26521669 A - NLK 3'UTR 0.08 TCGA-D8-A27V-01 17 26944265 26944265 G - KIAA0100 Frame_Shift_Del p.N1966Mfs*6 0.12 TCGA-D8-A27V-01 17 27016400 27016400 G - SUPT6H Frame_Shift_Del p.G1055Vfs*45 0.08 TCGA-D8-A27V-01 17 27207564 27207564 G - FLOT2 3'UTR 0.09 TCGA-D8-A27V-01 17 27284451 27284451 A - SEZ6 Frame_Shift_Del p.F803Lfs*3 0.09 TCGA-D8-A27V-01 17 27438590 27438590 G - MYO18A Frame_Shift_Del p.L918Ffs*21 0.10 TCGA-D8-A27V-01 17 27448945 27448945 A - MYO18A Frame_Shift_Del p.L373Cfs*8 0.09 TCGA-D8-A27V-01 17 27613990 27613990 G - NUFIP2 Frame_Shift_Del p.P341Qfs*12 0.08 TCGA-D8-A27V-01 17 27620856 27620856 T - NUFIP2 Frame_Shift_Del p.K74Nfs*24 0.12 TCGA-D8-A27V-01 17 27620880 27620880 G - NUFIP2 Frame_Shift_Del p.K67Rfs*7 0.08 TCGA-D8-A27V-01 17 27903662 27903662 C - GIT1 Frame_Shift_Del p.A429Lfs*2 0.11 TCGA-D8-A27V-01 17 27957924 27957924 G - SSH2 Frame_Shift_Del p.R1404Gfs*3 0.09 TCGA-D8-A27V-01 17 28576114 28576114 G - BLMH Frame_Shift_Del p.P430Lfs*5 0.10 TCGA-D8-A27V-01 17 29326030 29326030 G - RNF135 Frame_Shift_Del p.V375Wfs*6 0.12 TCGA-D8-A27V-01 17 29632217 29632217 T - EVI2B Frame_Shift_Del p.Q137Hfs*25 0.08 TCGA-D8-A27V-01 17 29632276 29632276 G - EVI2B Frame_Shift_Del p.Q118Sfs*44 0.11 TCGA-D8-A27V-01 17 30219798 30219798 A - UTP6 Frame_Shift_Del p.W110Gfs*78 0.13 TCGA-D8-A27V-01 17 30648201 30648201 A - RHBDL3 Frame_Shift_Del p.I390Sfs*9 0.08 TCGA-D8-A27V-01 17 33316682 33316682 G - LIG3 Frame_Shift_Del 0.11 TCGA-D8-A27V-01 17 33331538 33331538 C - LIG3 3'UTR 0.11 TCGA-D8-A27V-01 17 33456648 33456648 G - FNDC8 Frame_Shift_Del p.V266Wfs*148 0.09 TCGA-D8-A27V-01 17 33591256 33591256 C T SLFN5 Missense_Mutation p.S398L 0.40 tolerated(0.11) benign(0.194) TCGA-D8-A27V-01 17 33592565 33592565 T - SLFN5 Frame_Shift_Del p.L780Sfs*29 0.09 TCGA-D8-A27V-01 17 34062381 34062381 T - RASL10B Frame_Shift_Del p.P61Hfs*55 0.27 TCGA-D8-A27V-01 17 3476964 3476964 T - SHPK Frame_Shift_Del p.K689Rfs*29 0.09 TCGA-D8-A27V-01 17 3476979 3476979 C - SHPK Frame_Shift_Del p.G684Vfs*34 0.08 TCGA-D8-A27V-01 17 35937498 35937498 T - SYNRG Frame_Shift_Del p.N268Tfs*40 0.11 TCGA-D8-A27V-01 17 36868998 36868998 C - MLLT6 Frame_Shift_Del p.S261Afs*48 0.19 TCGA-D8-A27V-01 17 36962611 36962611 T - CWC25 Frame_Shift_Del p.T314Lfs*28 0.08 TCGA-D8-A27V-01 17 36977246 36977246 C - CWC25 Frame_Shift_Del p.E33Dfs*49 0.10 TCGA-D8-A27V-01 17 36981429 36981429 C - CWC25 Frame_Shift_Del p.G3Afs*4 0.11 TCGA-D8-A27V-01 17 3724574 3724574 A - C17orf85 Frame_Shift_Del p.G324Afs*2 0.09 TCGA-D8-A27V-01 17 37321371 37321371 C - ARL5C Frame_Shift_Del p.G23Dfs*15 0.14 TCGA-D8-A27V-01 17 37604094 37604094 T - MED1 Frame_Shift_Del p.N30Ifs*20 0.11 TCGA-D8-A27V-01 17 37687253 37687253 C - CDK12 Frame_Shift_Del p.S1387Afs*24 0.12 TCGA-D8-A27V-01 17 37873695 37873695 G - ERBB2 Frame_Shift_Del p.G621Afs*31 0.14 TCGA-D8-A27V-01 17 38065270 38065270 G - GSDMB Frame_Shift_Del p.P201Qfs*5 0.23 TCGA-D8-A27V-01 17 38146390 38146390 A - PSMD3 Frame_Shift_Del p.T308Rfs*2 0.17 TCGA-D8-A27V-01 17 38635928 38635928 C - TNS4 Frame_Shift_Del p.K637Rfs*69 0.10 TCGA-D8-A27V-01 17 38643488 38643488 G - TNS4 Frame_Shift_Del p.P363Hfs*14 0.10 TCGA-D8-A27V-01 17 38925179 38925179 A - KRT26 Frame_Shift_Del p.L380* 0.12 TCGA-D8-A27V-01 17 39296262 39296262 A - KRTAP4-6 Frame_Shift_Del p.C160Afs*51 0.10 TCGA-D8-A27V-01 17 39340705 39340707 TGC GT KRTAP4-1 Frame_Shift_Del p.A134Tfs*55 0.09 TCGA-D8-A27V-01 17 39723730 39723730 C - KRT9 Frame_Shift_Del p.G556Afs*? 0.11 TCGA-D8-A27V-01 17 39727916 39727916 C - KRT9 Frame_Shift_Del p.G110Vfs*40 0.08 TCGA-D8-A27V-01 17 39768629 39768629 A - KRT16 Frame_Shift_Del p.G105Vfs*15 0.09 TCGA-D8-A27V-01 17 4058022 4058022 C - CYB5D2 Frame_Shift_Del p.Q150Rfs*2 0.13 TCGA-D8-A27V-01 17 4060340 4060340 C - CYB5D2 Frame_Shift_Del p.P254Hfs*3 0.09 TCGA-D8-A27V-01 17 40725571 40725571 T - PSMC3IP Frame_Shift_Del p.E136Dfs*9 0.08 TCGA-D8-A27V-01 17 40744145 40744145 A - FAM134C Frame_Shift_Del p.L92Yfs*6 0.10 TCGA-D8-A27V-01 17 4087155 4087155 G - ANKFY1 Frame_Shift_Del p.L626Sfs*65 0.12 TCGA-D8-A27V-01 17 40872427 40872427 A - EZH1 Frame_Shift_Del p.L177Wfs*7 0.12 TCGA-D8-A27V-01 17 40931030 40931030 G - VPS25 Frame_Shift_Del p.E159Sfs*109 0.14 TCGA-D8-A27V-01 17 40991389 40991389 A - PSME3 Frame_Shift_Del p.N239Ifs*9 0.17 TCGA-D8-A27V-01 17 41123665 41123665 C - PTGES3L Frame_Shift_Del p.D118Mfs*16 0.09 TCGA-D8-A27V-01 17 41150732 41150732 T - RPL27 5'UTR 0.11 TCGA-D8-A27V-01 17 41290836 41290836 T - NBR2 RNA 0.10 TCGA-D8-A27V-01 17 41584889 41584889 T - DHX8 Frame_Shift_Del p.F648Lfs*14 0.12 TCGA-D8-A27V-01 17 422463 422463 C T VPS53 Missense_Mutation p.E802K 0.27 tolerated(0.64) benign(0.053) TCGA-D8-A27V-01 17 42271660 42271660 T - ATXN7L3 Frame_Shift_Del p.T346Rfs*88 0.08 TCGA-D8-A27V-01 17 42293080 42293080 T - UBTF Frame_Shift_Del p.N139Tfs*4 0.10 TCGA-D8-A27V-01 17 42475015 42475015 G - GPATCH8 Frame_Shift_Del p.T1477Mfs*42 0.13 TCGA-D8-A27V-01 17 42477350 42477350 T - GPATCH8 Frame_Shift_Del p.S699Afs*410 0.09 TCGA-D8-A27V-01 17 42964062 42964062 C - EFTUD2 Frame_Shift_Del p.M55Wfs*26 0.10 TCGA-D8-A27V-01 17 42987625 42987625 C - GFAP 3'Flank 0.09 TCGA-D8-A27V-01 17 43481446 43481446 T - ARHGAP27 Frame_Shift_Del p.K158Rfs*34 0.09 TCGA-D8-A27V-01 17 44116440 44116440 T - KANSL1 Frame_Shift_Del p.N782Tfs*5 0.08 TCGA-D8-A27V-01 17 4448380 4448380 C - MYBBP1A Frame_Shift_Del p.D751Tfs*10 0.12 TCGA-D8-A27V-01 17 4448410 4448410 C - MYBBP1A Frame_Shift_Del p.E741Rfs*20 0.11 TCGA-D8-A27V-01 17 45369679 45369679 G - ITGB3 Frame_Shift_Del p.T480Pfs*189 0.09 TCGA-D8-A27V-01 17 45663055 45663055 T - NPEPPS Frame_Shift_Del p.F280Lfs*3 0.10 TCGA-D8-A27V-01 17 45740537 45740537 T - KPNB1 Frame_Shift_Del p.F261Lfs*8 0.12 TCGA-D8-A27V-01 17 45896401 45896401 T - OSBPL7 Frame_Shift_Del p.K107Rfs*36 0.11 TCGA-D8-A27V-01 17 46154371 46154371 C - CBX1 5'UTR 0.10 TCGA-D8-A27V-01 17 4644938 4644938 G - ZMYND15 Frame_Shift_Del p.G219Afs*5 0.09 TCGA-D8-A27V-01 17 46972668 46972668 T - ATP5G1 Frame_Shift_Del p.F90Lfs*4 0.10 TCGA-D8-A27V-01 17 47007923 47007923 C - SNF8 Frame_Shift_Del p.E231Rfs*95 0.10 TCGA-D8-A27V-01 17 47039111 47039111 C - GIP Frame_Shift_Del p.E110Rfs*24 0.08 TCGA-D8-A27V-01 17 47121369 47121369 C - IGF2BP1 Frame_Shift_Del p.Q415Rfs*72 0.08 TCGA-D8-A27V-01 17 47219453 47219453 A G B4GALNT2 Missense_Mutation p.N151S 0.24 tolerated(0.09) benign(0.09) TCGA-D8-A27V-01 17 47587913 47587913 G - NGFR Frame_Shift_Del p.G237Afs*7 0.09 TCGA-D8-A27V-01 17 47589328 47589328 A - NGFR Frame_Shift_Del p.K300Nfs*74 0.10 TCGA-D8-A27V-01 17 48460393 48460393 G - LRRC59 Frame_Shift_Del p.H294Mfs*43 0.08 TCGA-D8-A27V-01 17 4860364 4860364 C G ENO3 3'UTR 0.18 TCGA-D8-A27V-01 17 48608747 48608747 C - MYCBPAP Frame_Shift_Del p.I973* 0.09 TCGA-D8-A27V-01 17 48629377 48629377 G - SPATA20 Frame_Shift_Del p.G599Afs*52 0.09 TCGA-D8-A27V-01 17 48681556 48681556 A - CACNA1G Frame_Shift_Del p.T1404Rfs*2 0.10 TCGA-D8-A27V-01 17 48734528 48734528 T - ABCC3 Frame_Shift_Del p.L158* 0.09 TCGA-D8-A27V-01 17 48940805 48940805 T - TOB1 Frame_Shift_Del p.M192* 0.09 TCGA-D8-A27V-01 17 53014524 53014524 C - TOM1L1 Frame_Shift_Del p.R325Gfs*13 0.10 TCGA-D8-A27V-01 17 56396557 56396557 G - BZRAP1 Frame_Shift_Del p.L532Wfs*100 0.10 TCGA-D8-A27V-01 17 57057487 57057487 A - PPM1E Frame_Shift_Del p.E456Rfs*13 0.11 TCGA-D8-A27V-01 17 57697516 57697516 T - CLTC Frame_Shift_Del p.Q10Rfs*21 0.12 TCGA-D8-A27V-01 17 57721765 57721765 C - CLTC Frame_Shift_Del p.P58Qfs*16 0.09 TCGA-D8-A27V-01 17 57724970 57724970 C G CLTC Missense_Mutation p.I154M 0.41 deleterious(0.02) probably_damaging(0.928) TCGA-D8-A27V-01 17 57963473 57963473 T - TUBD1 Frame_Shift_Del p.K97Nfs*23 0.08 TCGA-D8-A27V-01 17 58094789 58094789 T - TBC1D3P1-DHX40P1 Intron 0.10 TCGA-D8-A27V-01 17 58332573 58332573 T - USP32 Frame_Shift_Del p.N346Mfs*8 0.10 TCGA-D8-A27V-01 17 60757536 60757536 T - MRC2 Frame_Shift_Del p.Y769Tfs*92 0.13 TCGA-D8-A27V-01 17 61466005 61466005 A - TANC2 Frame_Shift_Del p.V829Lfs*35 0.09 TCGA-D8-A27V-01 17 61775981 61775981 C - LIMD2 Frame_Shift_Del p.F106Lfs*165 0.15 TCGA-D8-A27V-01 17 61899504 61899504 C - FTSJ3 Frame_Shift_Del p.D439Ifs*2 0.10 TCGA-D8-A27V-01 17 61901713 61901713 G - FTSJ3 Frame_Shift_Del p.Q326Kfs*43 0.09 TCGA-D8-A27V-01 17 61910705 61910705 G - SMARCD2 Frame_Shift_Del p.Q465Rfs*21 0.10 TCGA-D8-A27V-01 17 61994657 61994657 C - GH1 3'UTR 0.14 TCGA-D8-A27V-01 17 62020279 62020279 C - SCN4A Frame_Shift_Del p.E1399Sfs*38 0.08 TCGA-D8-A27V-01 17 62028883 62028883 G - SCN4A Frame_Shift_Del p.Y919Tfs*2 0.09 TCGA-D8-A27V-01 17 62137914 62137914 T - ERN1 Frame_Shift_Del p.K374Rfs*17 0.08 TCGA-D8-A27V-01 17 62291516 62291516 G - TEX2 Frame_Shift_Del p.P21Lfs*46 0.10 TCGA-D8-A27V-01 17 62783431 62783431 T - PLEKHM1P Splice_Site 0.11 TCGA-D8-A27V-01 17 63526147 63526147 C - AXIN2 Frame_Shift_Del p.V827Cfs*34 0.08 TCGA-D8-A27V-01 17 6352659 6352659 G - FAM64A Frame_Shift_Del p.A208Rfs*13 0.08 TCGA-D8-A27V-01 17 63847980 63847980 T - CEP112 Frame_Shift_Del p.K779Rfs*2 0.08 TCGA-D8-A27V-01 17 63898304 63898304 T - CEP112 Frame_Shift_Del p.N710Ifs*24 0.10 TCGA-D8-A27V-01 17 644657 644657 G - FAM57A Frame_Shift_Del p.G208Dfs*2 0.11 TCGA-D8-A27V-01 17 64880746 64880746 G T CACNG5 Missense_Mutation p.A180S 0.31 tolerated(0.15) possibly_damaging(0.799) TCGA-D8-A27V-01 17 65014304 65014304 G - CACNG4 Splice_Site p.X74_splice 0.14 TCGA-D8-A27V-01 17 65157039 65157039 T - HELZ Frame_Shift_Del p.K683Nfs*25 0.08 TCGA-D8-A27V-01 17 65688747 65688747 A - PITPNC1 Frame_Shift_Del p.I249Sfs*67 0.08 TCGA-D8-A27V-01 17 66423356 66423356 T - WIPI1 Frame_Shift_Del p.N371Mfs*15 0.09 TCGA-D8-A27V-01 17 66891085 66891085 C - ABCA8 Frame_Shift_Del p.G905Efs*28 0.10 TCGA-D8-A27V-01 17 6928432 6928432 G - BCL6B Frame_Shift_Del p.A269Lfs*103 0.08 TCGA-D8-A27V-01 17 6929881 6929881 T - BCL6B Frame_Shift_Del p.L332Rfs*40 0.12 TCGA-D8-A27V-01 17 706984 706984 T - NXN Frame_Shift_Del p.I355Sfs*18 0.09 TCGA-D8-A27V-01 17 7132756 7132756 A - DVL2 Frame_Shift_Del p.F253Sfs*18 0.10 TCGA-D8-A27V-01 17 71640200 71640200 G - SDK2 Frame_Shift_Del p.L10* 0.12 TCGA-D8-A27V-01 17 7189753 7189753 G - SLC2A4 Frame_Shift_Del p.Y448Tfs*19 0.11 TCGA-D8-A27V-01 17 72249362 72249362 C - TTYH2 Frame_Shift_Del p.P469Rfs*14 0.11 TCGA-D8-A27V-01 17 7228737 7228737 C - NEURL4 Frame_Shift_Del p.M475Wfs*3 0.10 TCGA-D8-A27V-01 17 72342546 72342546 G - KIF19 Frame_Shift_Del p.A271Pfs*17 0.17 TCGA-D8-A27V-01 17 72578442 72578442 T - CD300LD Frame_Shift_Del p.T130Lfs*49 0.11 TCGA-D8-A27V-01 17 73235083 73235083 C - GGA3 Frame_Shift_Del p.R621Hfs*12 0.09 TCGA-D8-A27V-01 17 73316518 73316518 T - GRB2 Frame_Shift_Del p.G196Efs*18 0.16 TCGA-D8-A27V-01 17 7357826 7357826 T - CHRNB1 Frame_Shift_Del p.W345Gfs*16 0.08 TCGA-D8-A27V-01 17 73831007 73831007 A - UNC13D Frame_Shift_Del p.F662Lfs*16 0.16 TCGA-D8-A27V-01 17 74150398 74150398 A - RNF157 Frame_Shift_Del p.I593* 0.10 TCGA-D8-A27V-01 17 7416525 7416525 C - POLR2A Frame_Shift_Del p.S1649Afs*332 0.08 TCGA-D8-A27V-01 17 74625649 74625649 G - ST6GALNAC1 Frame_Shift_Del p.K93Rfs*42 0.13 TCGA-D8-A27V-01 17 7480921 7480921 A - EIF4A1 Frame_Shift_Del p.T269Pfs*2 0.11 TCGA-D8-A27V-01 17 7483232 7483232 A - CD68 Frame_Shift_Del p.R52Gfs*145 0.12 TCGA-D8-A27V-01 17 7483318 7483318 C - CD68 Frame_Shift_Del p.T82Pfs*115 0.08 TCGA-D8-A27V-01 17 7489103 7489103 G - MPDU1 Frame_Shift_Del p.G53Afs*4 0.09 TCGA-D8-A27V-01 17 75878231 75878231 A - FLJ45079 Frame_Shift_Del p.L81Cfs*46 0.08 TCGA-D8-A27V-01 17 75878283 75878283 A - FLJ45079 Frame_Shift_Del p.C64Afs*63 0.10 TCGA-D8-A27V-01 17 76202084 76202084 T - AFMID Frame_Shift_Del p.F285Lfs*7 0.15 TCGA-D8-A27V-01 17 76495184 76495184 T - DNAH17 Frame_Shift_Del p.N1870Ifs*28 0.16 TCGA-D8-A27V-01 17 76672201 76672201 T - CYTH1 Frame_Shift_Del p.K390Rfs*50 0.15 TCGA-D8-A27V-01 17 7734515 7734515 C - DNAH2 Frame_Shift_Del p.N4116Mfs*46 0.13 TCGA-D8-A27V-01 17 78085809 78085809 C - GAA Frame_Shift_Del p.T556Pfs*22 0.14 TCGA-D8-A27V-01 17 78171934 78171934 C - CARD14 Frame_Shift_Del p.P545Lfs*22 0.25 TCGA-D8-A27V-01 17 78178914 78178914 C - CARD14 Frame_Shift_Del p.R828Gfs*14 0.16 TCGA-D8-A27V-01 17 78857247 78857247 T - RPTOR Frame_Shift_Del p.L539Sfs*3 0.09 TCGA-D8-A27V-01 17 79077889 79077889 A - BAIAP2 Frame_Shift_Del p.N351Tfs*29 0.14 TCGA-D8-A27V-01 17 80206814 80206814 G - CSNK1D Frame_Shift_Del p.V379Sfs*52 0.12 TCGA-D8-A27V-01 17 8045203 8045203 A - PER1 Frame_Shift_Del p.S1174Lfs*26 0.15 TCGA-D8-A27V-01 17 80858561 80858561 C - TBCD Frame_Shift_Del p.P562Qfs*2 0.09 TCGA-D8-A27V-01 17 80896006 80896006 C - TBCD Frame_Shift_Del p.P1122Rfs*2 0.11 TCGA-D8-A27V-01 17 8424551 8424551 A - MYH10 Frame_Shift_Del p.F670Lfs*26 0.09 TCGA-D8-A27V-01 17 8647440 8647440 T - CCDC42 Frame_Shift_Del p.K49Rfs*24 0.12 TCGA-D8-A27V-01 17 8790447 8790447 C - PIK3R5 Frame_Shift_Del p.G624Afs*15 0.11 TCGA-D8-A27V-01 17 916039 916039 T - ABR Splice_Site p.X618_splice 0.09 TCGA-D8-A27V-01 17 9578245 9578245 A - USP43 Frame_Shift_Del p.N260Tfs*21 0.09 TCGA-D8-A27V-01 17 9846476 9846476 T - GAS7 Frame_Shift_Del p.K231Nfs*15 0.09 TCGA-D8-A27V-01 17 986844 986844 T - ABR Frame_Shift_Del p.A186Rfs*32 0.11 TCGA-D8-A27V-01 18 10550220 10550220 T - NAPG 3'UTR 0.15 TCGA-D8-A27V-01 18 18547810 18547810 T - ROCK1 Frame_Shift_Del p.K1032Rfs*21 0.09 TCGA-D8-A27V-01 18 19080070 19080070 C - GREB1L Frame_Shift_Del p.H1259Tfs*7 0.19 TCGA-D8-A27V-01 18 19154691 19154691 T - ESCO1 Frame_Shift_Del p.K38Nfs*8 0.08 TCGA-D8-A27V-01 18 21394405 21394405 T - LAMA3 Frame_Shift_Del p.C610Vfs*30 0.08 TCGA-D8-A27V-01 18 21495340 21495340 A - LAMA3 Frame_Shift_Del p.T2580Hfs*68 0.12 TCGA-D8-A27V-01 18 22040822 22040822 A - HRH4 Frame_Shift_Del p.N45Tfs*22 0.08 TCGA-D8-A27V-01 18 23615034 23615034 C - SS18 Frame_Shift_Del p.G344Dfs*83 0.08 TCGA-D8-A27V-01 18 23895249 23895249 A - TAF4B Frame_Shift_Del p.N631Mfs*5 0.09 TCGA-D8-A27V-01 18 28666595 28666595 A - DSC2 Frame_Shift_Del p.S296Lfs*8 0.10 TCGA-D8-A27V-01 18 28711692 28711692 T - DSC1 Frame_Shift_Del p.G785Efs*78 0.08 TCGA-D8-A27V-01 18 28923421 28923421 T - DSG1 Frame_Shift_Del p.L567* 0.08 TCGA-D8-A27V-01 18 29052735 29052735 T - DSG3 Frame_Shift_Del p.F696Sfs*26 0.08 TCGA-D8-A27V-01 18 2951066 2951066 C - LPIN2 Frame_Shift_Del p.A193Pfs*12 0.09 TCGA-D8-A27V-01 18 29867833 29867833 T - GAREM Frame_Shift_Del p.T243Pfs*5 0.11 TCGA-D8-A27V-01 18 30518042 30518042 T - CCDC178 Frame_Shift_Del p.N846Ifs*2 0.09 TCGA-D8-A27V-01 18 31322953 31322953 G A ASXL3 Silent p.R1047R 0.18 TCGA-D8-A27V-01 18 31325336 31325336 A - ASXL3 Frame_Shift_Del p.K1842Nfs*27 0.08 TCGA-D8-A27V-01 18 33706631 33706631 G - SLC39A6 Frame_Shift_Del p.H114Mfs*74 0.08 TCGA-D8-A27V-01 18 33718816 33718816 T - ELP2 Frame_Shift_Del p.L170Cfs*74 0.09 TCGA-D8-A27V-01 18 34238126 34238126 C - FHOD3 Frame_Shift_Del p.P430Hfs*44 0.08 TCGA-D8-A27V-01 18 34376883 34376883 T - TPGS2 Frame_Shift_Del p.K263Rfs*60 0.12 TCGA-D8-A27V-01 18 34752994 34752994 A - KIAA1328 Frame_Shift_Del p.K492Rfs*29 0.12 TCGA-D8-A27V-01 18 348069 348069 T - COLEC12 Frame_Shift_Del p.K92Nfs*2 0.08 TCGA-D8-A27V-01 18 3814222 3814222 T - DLGAP1 Frame_Shift_Del p.I337Ffs*72 0.12 TCGA-D8-A27V-01 18 42618573 42618573 C - SETBP1 Frame_Shift_Del p.P1376Qfs*20 0.10 TCGA-D8-A27V-01 18 43249355 43249355 T - SLC14A2 Frame_Shift_Del p.L708Cfs*38 0.10 TCGA-D8-A27V-01 18 44068969 44068969 G - LOXHD1 Frame_Shift_Del p.N895Tfs*17 0.11 TCGA-D8-A27V-01 18 44149513 44149513 T - LOXHD1 Frame_Shift_Del p.K712Nfs*33 0.09 TCGA-D8-A27V-01 18 44172460 44172460 C - LOXHD1 Splice_Site p.X506_splice 0.11 TCGA-D8-A27V-01 18 46197065 46197065 G - CTIF Frame_Shift_Del p.D154Mfs*5 0.13 TCGA-D8-A27V-01 18 47015730 47015730 T - RPL17-C18orf32 Frame_Shift_Del p.K169Sfs*2 0.09 TCGA-D8-A27V-01 18 49867199 49867199 T - DCC Frame_Shift_Del p.F15Lfs*15 0.09 TCGA-D8-A27V-01 18 52602099 52602099 T - CCDC68 Frame_Shift_Del p.K184Nfs*23 0.10 TCGA-D8-A27V-01 18 57122084 57122084 T - CCBE1 Frame_Shift_Del p.K218Rfs*181 0.10 TCGA-D8-A27V-01 18 60029005 60029005 A - TNFRSF11A Frame_Shift_Del p.A241Hfs*17 0.08 TCGA-D8-A27V-01 18 63430138 63430138 T - CDH7 Frame_Shift_Del p.S22Lfs*3 0.09 TCGA-D8-A27V-01 18 66564481 66564481 C - CCDC102B Frame_Shift_Del p.S361Rfs*23 0.08 TCGA-D8-A27V-01 18 70417832 70417832 C - NETO1 Frame_Shift_Del p.D336Tfs*3 0.10 TCGA-D8-A27V-01 18 72179706 72179706 C - CNDP2 Frame_Shift_Del p.H228Ifs*13 0.09 TCGA-D8-A27V-01 18 72775896 72775896 G A ZNF407 Silent p.Q2073Q 0.23 TCGA-D8-A27V-01 18 743054 743054 T - YES1 Frame_Shift_Del p.K308Nfs*5 0.08 TCGA-D8-A27V-01 18 9221898 9221898 A - ANKRD12 Frame_Shift_Del p.K282Nfs*9 0.10 TCGA-D8-A27V-01 18 9280953 9280953 G A ANKRD12 Missense_Mutation p.M2006I 0.31 deleterious(0) benign(0.153) TCGA-D8-A27V-01 19 10506110 10506110 C - CDC37 Splice_Site p.X163_splice 0.09 TCGA-D8-A27V-01 19 10506136 10506136 T - CDC37 Frame_Shift_Del p.K154Nfs*44 0.09 TCGA-D8-A27V-01 19 10572637 10572637 G - PDE4A Frame_Shift_Del p.V570Sfs*4 0.09 TCGA-D8-A27V-01 19 1065371 1065371 A - ABCA7 Frame_Shift_Del p.K2130Nfs*? 0.08 TCGA-D8-A27V-01 19 11468382 11468382 T - DKFZP761J1410 Frame_Shift_Del p.F12Sfs*114 0.13 TCGA-D8-A27V-01 19 1149421 1149421 G - SBNO2 Frame_Shift_Del p.Y39Tfs*21 0.11 TCGA-D8-A27V-01 19 11594514 11594514 C - ZNF653 Frame_Shift_Del p.D611Ifs*11 0.10 TCGA-D8-A27V-01 19 11658672 11658672 A - CNN1 Frame_Shift_Del p.K151Nfs*7 0.13 TCGA-D8-A27V-01 19 11665142 11665142 T - ELOF1 Frame_Shift_Del p.K7Nfs*10 0.11 TCGA-D8-A27V-01 19 11728579 11728579 T - ZNF627 Frame_Shift_Del p.C421Vfs*114 0.14 TCGA-D8-A27V-01 19 12792434 12792434 G A DHPS Silent p.F49F 0.30 TCGA-D8-A27V-01 19 12817094 12817094 C - TNPO2 Frame_Shift_Del p.K529Nfs*21 0.12 TCGA-D8-A27V-01 19 13035779 13035779 T - FARSA Frame_Shift_Del p.N322Tfs*105 0.11 TCGA-D8-A27V-01 19 14001020 14001020 C - C19orf57 Frame_Shift_Del p.A217Pfs*126 0.09 TCGA-D8-A27V-01 19 14023209 14023209 G - CC2D1A Frame_Shift_Del p.T92Rfs*16 0.10 TCGA-D8-A27V-01 19 14217677 14217677 A - PRKACA Frame_Shift_Del p.F44Lfs*15 0.08 TCGA-D8-A27V-01 19 14263660 14263660 C - LPHN1 Frame_Shift_Del p.G1125Afs*33 0.10 TCGA-D8-A27V-01 19 14513613 14513613 T - CD97 Frame_Shift_Del p.F464Sfs*22 0.08 TCGA-D8-A27V-01 19 1495551 1495551 C - REEP6 Frame_Shift_Del p.E99Sfs*47 0.09 TCGA-D8-A27V-01 19 15052684 15052684 C - OR7C2 Frame_Shift_Del p.L130Cfs*7 0.08 TCGA-D8-A27V-01 19 15166866 15166866 A - CASP14 Frame_Shift_Del p.S233Afs*65 0.09 TCGA-D8-A27V-01 19 15222238 15222238 A - SYDE1 Frame_Shift_Del p.N469Mfs*61 0.08 TCGA-D8-A27V-01 19 15223156 15223156 G - SYDE1 Splice_Site p.X527_splice 0.07 TCGA-D8-A27V-01 19 15510130 15510130 T - AKAP8L Frame_Shift_Del p.D381Tfs*40 0.15 TCGA-D8-A27V-01 19 15571021 15571021 G - RASAL3 Frame_Shift_Del p.R219Gfs*46 0.10 TCGA-D8-A27V-01 19 15648212 15648212 A - CYP4F22 Frame_Shift_Del p.K137Nfs*4 0.13 TCGA-D8-A27V-01 19 15852438 15852438 C - OR10H3 Frame_Shift_Del p.P80Lfs*46 0.11 TCGA-D8-A27V-01 19 16060389 16060389 A - OR10H4 Frame_Shift_Del p.N192Tfs*10 0.08 TCGA-D8-A27V-01 19 16319959 16319959 T - AP1M1 Frame_Shift_Del p.L173Wfs*76 0.13 TCGA-D8-A27V-01 19 16612295 16612295 A - C19orf44 Frame_Shift_Del p.N233Tfs*26 0.15 TCGA-D8-A27V-01 19 16872911 16872911 C T NWD1 Silent p.L699L 0.22 TCGA-D8-A27V-01 19 17036180 17036180 C - CPAMD8 Frame_Shift_Del p.D1172Tfs*7 0.08 TCGA-D8-A27V-01 19 17104267 17104267 T - CPAMD8 Frame_Shift_Del p.I456Sfs*17 0.09 TCGA-D8-A27V-01 19 17396490 17396490 C - ANKLE1 Frame_Shift_Del p.H514Tfs*45 0.09 TCGA-D8-A27V-01 19 17760359 17760359 C G UNC13A Missense_Mutation p.D493H 0.18 deleterious(0) probably_damaging(0.999) TCGA-D8-A27V-01 19 17845155 17845155 C - MAP1S Frame_Shift_Del p.A1033Gfs*53 0.09 TCGA-D8-A27V-01 19 17881650 17881650 A - FCHO1 Frame_Shift_Del p.K181Nfs*28 0.14 TCGA-D8-A27V-01 19 1819965 1819965 C - REXO1 Frame_Shift_Del p.G873Afs*48 0.16 TCGA-D8-A27V-01 19 18377070 18377070 T - KIAA1683 Frame_Shift_Del p.N427Tfs*12 0.08 TCGA-D8-A27V-01 19 18377129 18377129 G - KIAA1683 Frame_Shift_Del p.T408Qfs*31 0.09 TCGA-D8-A27V-01 19 18423457 18423457 T - LSM4 Frame_Shift_Del p.N34Tfs*3 0.09 TCGA-D8-A27V-01 19 18423473 18423473 G - LSM4 Frame_Shift_Del p.L29Wfs*2 0.09 TCGA-D8-A27V-01 19 18963055 18963055 C - UPF1 Frame_Shift_Del p.L309Wfs*12 0.16 TCGA-D8-A27V-01 19 18994959 18994959 G A CERS1 Missense_Mutation p.S176L 0.19 deleterious(0) probably_damaging(0.934) TCGA-D8-A27V-01 19 19010711 19010711 G - COPE Frame_Shift_Del p.H284Ifs*35 0.11 TCGA-D8-A27V-01 19 19112426 19112426 T - SUGP2 Frame_Shift_Del p.K996Rfs*14 0.09 TCGA-D8-A27V-01 19 19261529 19261529 T - MEF2B Frame_Shift_Del p.I6Sfs*14 0.09 TCGA-D8-A27V-01 19 19309501 19309501 G A RFXANK Silent p.G200G 0.23 TCGA-D8-A27V-01 19 19327765 19327765 G - NCAN Frame_Shift_Del p.A3Pfs*10 0.10 TCGA-D8-A27V-01 19 19338131 19338131 C - NCAN Frame_Shift_Del p.P569Lfs*19 0.09 TCGA-D8-A27V-01 19 2102199 2102199 C T AP3D1 Silent p.E1207E 0.28 TCGA-D8-A27V-01 19 2102255 2102255 C T AP3D1 Missense_Mutation p.V1189I 0.23 tolerated(0.36) benign(0.198) TCGA-D8-A27V-01 19 21131828 21131828 A - ZNF85 Frame_Shift_Del p.K171Rfs*15 0.12 TCGA-D8-A27V-01 19 21719580 21719580 C T ZNF429 Missense_Mutation p.S242L 0.20 deleterious(0.03) possibly_damaging(0.87) TCGA-D8-A27V-01 19 2193730 2193730 G - DOT1L Frame_Shift_Del p.C179Sfs*28 0.10 TCGA-D8-A27V-01 19 23928058 23928058 C T ZNF681 Silent p.V98V 0.19 TCGA-D8-A27V-01 19 24310394 24310394 C T ZNF254 Missense_Mutation p.S531L 0.26 deleterious(0.02) benign(0.018) TCGA-D8-A27V-01 19 2878142 2878142 A - ZNF556 Frame_Shift_Del p.K396Nfs*3 0.10 TCGA-D8-A27V-01 19 3013735 3013735 C - TLE2 Frame_Shift_Del p.V269Wfs*23 0.14 TCGA-D8-A27V-01 19 31039782 31039782 G C ZNF536 Missense_Mutation p.E1086Q 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.587) TCGA-D8-A27V-01 19 3157813 3157813 A - GNA15 Frame_Shift_Del p.T279Pfs*171 0.12 TCGA-D8-A27V-01 19 31770258 31770258 G - TSHZ3 Frame_Shift_Del p.N147Kfs*83 0.09 TCGA-D8-A27V-01 19 33493152 33493152 C - RHPN2 Splice_Site p.X369_splice 0.12 TCGA-D8-A27V-01 19 33617539 33617539 A - GPATCH1 Frame_Shift_Del p.K890Nfs*31 0.12 TCGA-D8-A27V-01 19 33697604 33697604 C - LRP3 Frame_Shift_Del p.V565Wfs*61 0.11 TCGA-D8-A27V-01 19 34981339 34981339 G - WTIP Frame_Shift_Del p.S244Vfs*57 0.09 TCGA-D8-A27V-01 19 35832639 35832639 G - CD22 Frame_Shift_Del p.D604Tfs*3 0.09 TCGA-D8-A27V-01 19 35850608 35850608 C - FFAR3 Frame_Shift_Del p.F274Lfs*18 0.09 TCGA-D8-A27V-01 19 36002664 36002664 C - DMKN Splice_Site p.X245_splice 0.11 TCGA-D8-A27V-01 19 36004055 36004055 T - DMKN Frame_Shift_Del p.N108Tfs*79 0.09 TCGA-D8-A27V-01 19 36145554 36145554 C - COX6B1 Frame_Shift_Del p.L64Sfs*41 0.09 TCGA-D8-A27V-01 19 36220993 36220993 C A KMT2B Missense_Mutation p.F1681L 0.18 probably_damaging(0.95) TCGA-D8-A27V-01 19 3623960 3623960 C T CACTIN Missense_Mutation p.R123Q 0.38 tolerated_low_confidence(0.47) unknown(0) TCGA-D8-A27V-01 19 36642366 36642366 C - COX7A1 Frame_Shift_Del p.G62Afs*? 0.11 TCGA-D8-A27V-01 19 37413745 37413745 A - ZNF568 Frame_Shift_Del p.A26Lfs*23 0.09 TCGA-D8-A27V-01 19 38134181 38134181 T - ZFP30 Frame_Shift_Del p.R74Efs*5 0.10 TCGA-D8-A27V-01 19 38376716 38376716 A - WDR87 Frame_Shift_Del p.L2493Cfs*6 0.08 TCGA-D8-A27V-01 19 38380613 38380613 T - WDR87 Frame_Shift_Del p.K1194Rfs*9 0.10 TCGA-D8-A27V-01 19 38847471 38847471 A - CATSPERG Frame_Shift_Del p.K429Nfs*34 0.09 TCGA-D8-A27V-01 19 38849077 38849077 G - CATSPERG Frame_Shift_Del p.G458Dfs*5 0.09 TCGA-D8-A27V-01 19 38910859 38910859 G - RASGRP4 Frame_Shift_Del p.Q141Sfs*2 0.10 TCGA-D8-A27V-01 19 39109941 39109941 G - EIF3K Frame_Shift_Del p.G12Afs*22 0.12 TCGA-D8-A27V-01 19 39409069 39409069 C - SARS2 Frame_Shift_Del p.A307Qfs*52 0.16 TCGA-D8-A27V-01 19 39443237 39443237 C - FBXO17 Intron 0.09 TCGA-D8-A27V-01 19 39517594 39517594 A - FBXO27 Frame_Shift_Del p.L209* 0.09 TCGA-D8-A27V-01 19 39819601 39819601 C - GMFG Intron 0.09 TCGA-D8-A27V-01 19 39819628 39819628 C - GMFG Intron 0.08 TCGA-D8-A27V-01 19 39879631 39879631 G - PAF1 Frame_Shift_Del p.R198Efs*24 0.11 TCGA-D8-A27V-01 19 39998936 39998936 T - DLL3 3'UTR 0.09 TCGA-D8-A27V-01 19 40172127 40172127 G - AC093063.3 5'Flank 0.09 TCGA-D8-A27V-01 19 40225015 40225015 C - CLC Frame_Shift_Del p.A71Pfs*21 0.11 TCGA-D8-A27V-01 19 40368676 40368676 G - FCGBP Frame_Shift_Del p.N4225Tfs*173 0.10 TCGA-D8-A27V-01 19 40419999 40419999 G - FCGBP Frame_Shift_Del p.L999Cfs*136 0.11 TCGA-D8-A27V-01 19 40698256 40698256 G - MAP3K10 Frame_Shift_Del p.G108Afs*30 0.15 TCGA-D8-A27V-01 19 40744862 40744862 G - AKT2 Frame_Shift_Del p.Q220Rfs*9 0.09 TCGA-D8-A27V-01 19 40762855 40762855 G - AKT2 Frame_Shift_Del p.L52* 0.09 TCGA-D8-A27V-01 19 41112179 41112179 A - LTBP4 Frame_Shift_Del p.T346Pfs*56 0.11 TCGA-D8-A27V-01 19 41354204 41354204 C - CYP2A6 Frame_Shift_Del p.D192Tfs*13 0.10 TCGA-D8-A27V-01 19 41601838 41601838 C - CYP2A13 Frame_Shift_Del p.R494Afs*44 0.12 TCGA-D8-A27V-01 19 42728648 42728648 G - ZNF526 Frame_Shift_Del p.E32Rfs*6 0.08 TCGA-D8-A27V-01 19 43093000 43093000 G - CEACAM8 Frame_Shift_Del p.C299Afs*17 0.09 TCGA-D8-A27V-01 19 44050864 44050864 T - XRCC1 Frame_Shift_Del p.T437Pfs*32 0.09 TCGA-D8-A27V-01 19 44252165 44252165 T - SMG9 Frame_Shift_Del p.T64Pfs*38 0.08 TCGA-D8-A27V-01 19 44529571 44529571 G - ZNF222 5'UTR 0.13 TCGA-D8-A27V-01 19 44832020 44832020 C - ZNF112 Frame_Shift_Del p.V770Ffs*157 0.09 TCGA-D8-A27V-01 19 44840820 44840820 T - ZNF112 Frame_Shift_Del p.K65Sfs*3 0.11 TCGA-D8-A27V-01 19 4512654 4512654 C - PLIN4 Frame_Shift_Del p.V426* 0.09 TCGA-D8-A27V-01 19 4513178 4513178 G A PLIN4 Missense_Mutation p.T251I 0.27 deleterious(0) probably_damaging(0.963) TCGA-D8-A27V-01 19 45185839 45185839 C - CEACAM19 Frame_Shift_Del p.L266Cfs*21 0.12 TCGA-D8-A27V-01 19 45506210 45506210 C - RELB Frame_Shift_Del p.D39Tfs*52 0.11 TCGA-D8-A27V-01 19 45822967 45822967 G - CKM Frame_Shift_Del p.P2Hfs*11 0.08 TCGA-D8-A27V-01 19 45920146 45920146 G - ERCC1 Frame_Shift_Del p.Q179Sfs*18 0.10 TCGA-D8-A27V-01 19 46324655 46324655 T - SYMPK Frame_Shift_Del p.K960Nfs*25 0.09 TCGA-D8-A27V-01 19 47030293 47030293 T - PPP5D1 Frame_Shift_Del p.M42* 0.09 TCGA-D8-A27V-01 19 47112414 47112414 C - CALM3 3'UTR 0.12 TCGA-D8-A27V-01 19 47207470 47207470 T - PRKD2 Frame_Shift_Del p.K282Rfs*100 0.08 TCGA-D8-A27V-01 19 47234021 47234021 C - STRN4 Frame_Shift_Del p.D283Tfs*10 0.09 TCGA-D8-A27V-01 19 47342740 47342740 G - AP2S1 Frame_Shift_Del p.I84Ffs*8 0.11 TCGA-D8-A27V-01 19 47844690 47844690 C - C5AR2 Frame_Shift_Del p.L213Wfs*99 0.09 TCGA-D8-A27V-01 19 48024492 48024492 G - ZNF541 Frame_Shift_Del p.L1363Cfs*56 0.09 TCGA-D8-A27V-01 19 48248869 48248869 C - GLTSCR2 Frame_Shift_Del p.D19Ifs*16 0.09 TCGA-D8-A27V-01 19 48254836 48254836 A - GLTSCR2 Frame_Shift_Del p.G221Efs*2 0.09 TCGA-D8-A27V-01 19 48284572 48284572 A - SEPW1 Frame_Shift_Del p.S71Afs*? 0.11 TCGA-D8-A27V-01 19 48480026 48480026 T - BSPH1 Frame_Shift_Del p.K114Nfs*5 0.11 TCGA-D8-A27V-01 19 48480642 48480642 A - BSPH1 Frame_Shift_Del p.C82Afs*18 0.09 TCGA-D8-A27V-01 19 48480728 48480728 T - BSPH1 Frame_Shift_Del p.N53Mfs*19 0.09 TCGA-D8-A27V-01 19 48533725 48533725 G - CABP5 3'UTR 0.10 TCGA-D8-A27V-01 19 48634334 48634334 T - LIG1 Frame_Shift_Del p.K607Rfs*109 0.11 TCGA-D8-A27V-01 19 48657174 48657174 T - LIG1 Frame_Shift_Del p.S141Vfs*48 0.09 TCGA-D8-A27V-01 19 48734986 48734986 T - CARD8 Frame_Shift_Del p.N158Ifs*15 0.08 TCGA-D8-A27V-01 19 48785718 48785718 G A ZNF114 Missense_Mutation p.V34M 0.29 deleterious(0) possibly_damaging(0.867) TCGA-D8-A27V-01 19 49132545 49132545 C - SPHK2 Frame_Shift_Del p.P495Hfs*14 0.11 TCGA-D8-A27V-01 19 49142859 49142859 G - CA11 Frame_Shift_Del p.P196Hfs*27 0.09 TCGA-D8-A27V-01 19 49309779 49309779 G - BCAT2 Frame_Shift_Del p.L99Cfs*7 0.08 TCGA-D8-A27V-01 19 49714757 49714757 C - TRPM4 3'UTR 0.09 TCGA-D8-A27V-01 19 49843452 49843452 C - CD37 Intron 0.09 TCGA-D8-A27V-01 19 50166739 50166739 G - IRF3 Frame_Shift_Del p.R68Gfs*25 0.10 TCGA-D8-A27V-01 19 50332267 50332267 C - MED25 Frame_Shift_Del p.P150Hfs*64 0.10 TCGA-D8-A27V-01 19 50368447 50368447 G - PNKP Frame_Shift_Del p.G146Afs*9 0.12 TCGA-D8-A27V-01 19 50383589 50383591 CGA GG TBC1D17 Frame_Shift_Del p.D84Afs*38 0.10 TCGA-D8-A27V-01 19 50393003 50393003 T - IL4I1 Frame_Shift_Del p.K565Rfs*? 0.10 TCGA-D8-A27V-01 19 50758482 50758482 G - MYH14 Frame_Shift_Del p.G652Afs*40 0.11 TCGA-D8-A27V-01 19 51226916 51226916 C - CLEC11A Frame_Shift_Del p.L46* 0.09 TCGA-D8-A27V-01 19 51530827 51530827 A G KLK11 5'UTR 0.29 TCGA-D8-A27V-01 19 52031041 52031041 T - SIGLEC6 Frame_Shift_Del p.N383Tfs*5 0.08 TCGA-D8-A27V-01 19 52033725 52033725 T - SIGLEC6 Frame_Shift_Del p.V241Wfs*44 0.09 TCGA-D8-A27V-01 19 52130746 52130746 C - SIGLEC5 Frame_Shift_Del p.S418Pfs*43 0.09 TCGA-D8-A27V-01 19 52147202 52147202 G - SIGLEC14 Frame_Shift_Del p.P281Lfs*4 0.17 TCGA-D8-A27V-01 19 52394357 52394357 T - ZNF649 Frame_Shift_Del p.K344Nfs*19 0.09 TCGA-D8-A27V-01 19 52519865 52519865 T - ZNF614 Frame_Shift_Del p.N329Ifs*26 0.10 TCGA-D8-A27V-01 19 52579321 52579321 C - ZNF841 Frame_Shift_Del p.E83Nfs*3 0.08 TCGA-D8-A27V-01 19 54301532 54301532 C - NLRP12 Frame_Shift_Del p.L965Cfs*36 0.11 TCGA-D8-A27V-01 19 54304545 54304545 C - NLRP12 Frame_Shift_Del p.D898Tfs*51 0.11 TCGA-D8-A27V-01 19 55451618 55451618 T - NLRP7 Frame_Shift_Del p.K190Sfs*37 0.08 TCGA-D8-A27V-01 19 55663227 55663227 C - TNNI3 Frame_Shift_Del p.G203Afs*18 0.08 TCGA-D8-A27V-01 19 55677902 55677902 A - DNAAF3 Frame_Shift_Del p.W39Gfs*3 0.14 TCGA-D8-A27V-01 19 55718112 55718112 C - PTPRH Frame_Shift_Del p.W100Gfs*7 0.09 TCGA-D8-A27V-01 19 56175028 56175028 G - U2AF2 Frame_Shift_Del p.G221Afs*4 0.08 TCGA-D8-A27V-01 19 5653182 5653182 T - SAFB Frame_Shift_Del p.F451Lfs*26 0.08 TCGA-D8-A27V-01 19 56733659 56733659 G - ZSCAN5A Frame_Shift_Del p.P259Qfs*3 0.08 TCGA-D8-A27V-01 19 56925397 56925397 C T ZNF583 Nonsense_Mutation p.Q27* 0.23 TCGA-D8-A27V-01 19 57334127 57334127 T - PEG3 Frame_Shift_Del p.R187Efs*83 0.09 TCGA-D8-A27V-01 19 58453709 58453709 A - ZNF256 Frame_Shift_Del p.L156* 0.08 TCGA-D8-A27V-01 19 59027806 59027806 A - ZBTB45 Frame_Shift_Del p.F412Sfs*137 0.09 TCGA-D8-A27V-01 19 59057156 59057156 C - TRIM28 Frame_Shift_Del p.P161Qfs*18 0.12 TCGA-D8-A27V-01 19 5923250 5923250 T - RANBP3 Frame_Shift_Del p.V389Wfs*55 0.09 TCGA-D8-A27V-01 19 7585455 7585455 G - ZNF358 Frame_Shift_Del p.V443Ffs*? 0.12 TCGA-D8-A27V-01 19 7712629 7712629 C - STXBP2 Frame_Shift_Del p.P573Rfs*8 0.10 TCGA-D8-A27V-01 19 8322845 8322845 C - CERS4 Frame_Shift_Del p.R276Dfs*34 0.12 TCGA-D8-A27V-01 19 8528508 8528508 A - HNRNPM Frame_Shift_Del p.A128Lfs*5 0.09 TCGA-D8-A27V-01 19 8616716 8616716 G - MYO1F Frame_Shift_Del p.L227Sfs*2 0.09 TCGA-D8-A27V-01 19 8987284 8987284 G - MUC16 Frame_Shift_Del p.L13935Cfs*47 0.11 TCGA-D8-A27V-01 19 9024934 9024934 T - MUC16 Frame_Shift_Del p.S12310Afs*13 0.09 TCGA-D8-A27V-01 19 9047650 9047650 C - MUC16 Frame_Shift_Del p.R11328Efs*52 0.08 TCGA-D8-A27V-01 19 9061126 9061126 A - MUC16 Frame_Shift_Del p.S8774Lfs*12 0.08 TCGA-D8-A27V-01 19 9066715 9066715 T - MUC16 Frame_Shift_Del p.T6911Pfs*39 0.11 TCGA-D8-A27V-01 19 9066936 9066936 G - MUC16 Frame_Shift_Del p.P6837Lfs*3 0.09 TCGA-D8-A27V-01 19 9066977 9066977 G - MUC16 Frame_Shift_Del p.I6824Ffs*8 0.10 TCGA-D8-A27V-01 19 9072451 9072451 G - MUC16 Frame_Shift_Del p.Q4999Rfs*8 0.09 TCGA-D8-A27V-01 19 9074983 9074983 C G MUC16 Missense_Mutation p.E4155Q 0.26 unknown(0) TCGA-D8-A27V-01 19 9085373 9085373 T - MUC16 Frame_Shift_Del p.M2148Wfs*3 0.09 TCGA-D8-A27V-01 19 9085906 9085906 G - MUC16 Frame_Shift_Del p.P1970Qfs*152 0.08 TCGA-D8-A27V-01 19 9266714 9266714 T - ZNF317 Frame_Shift_Del p.F8Lfs*50 0.10 TCGA-D8-A27V-01 19 9578473 9578473 T - ZNF560 Frame_Shift_Del p.T384Pfs*40 0.09 TCGA-D8-A27V-01 1 100214222 100214222 T - FRRS1 Frame_Shift_Del p.M35* 0.10 TCGA-D8-A27V-01 1 100525493 100525493 A - HIAT1 Frame_Shift_Del p.K102Nfs*6 0.08 TCGA-D8-A27V-01 1 100533650 100533650 A - HIAT1 Frame_Shift_Del p.I202Ffs*36 0.09 TCGA-D8-A27V-01 1 100571355 100571355 T - SASS6 Frame_Shift_Del p.I505Sfs*9 0.08 TCGA-D8-A27V-01 1 101342368 101342368 A - EXTL2 Frame_Shift_Del p.F162Lfs*14 0.09 TCGA-D8-A27V-01 1 1018321 1018321 G A C1orf159 Silent p.A183A 0.31 TCGA-D8-A27V-01 1 10689792 10689792 C - PEX14 Frame_Shift_Del p.Q296Rfs*39 0.12 TCGA-D8-A27V-01 1 108697646 108697646 T - SLC25A24 Frame_Shift_Del p.I261Lfs*26 0.14 TCGA-D8-A27V-01 1 109730948 109730948 C - KIAA1324 Frame_Shift_Del p.P398Hfs*51 0.09 TCGA-D8-A27V-01 1 110200276 110200276 C - GSTM4 Frame_Shift_Del p.R82Afs*42 0.08 TCGA-D8-A27V-01 1 110256282 110256282 G - GSTM5 Splice_Site p.X87_splice 0.14 TCGA-D8-A27V-01 1 11137420 11137420 A - EXOSC10 Splice_Site p.X627_splice 0.15 TCGA-D8-A27V-01 1 111434070 111434070 T - CD53 Frame_Shift_Del p.F15Sfs*21 0.08 TCGA-D8-A27V-01 1 11151216 11151216 T - EXOSC10 Frame_Shift_Del p.A167Qfs*96 0.09 TCGA-D8-A27V-01 1 111703777 111703777 T - CEPT1 Frame_Shift_Del p.F164Lfs*47 0.14 TCGA-D8-A27V-01 1 111854870 111854870 G - CHIA Frame_Shift_Del p.R40Afs*15 0.11 TCGA-D8-A27V-01 1 11186692 11186692 T - MTOR Frame_Shift_Del p.K2171Nfs*2 0.10 TCGA-D8-A27V-01 1 11194494 11194494 A - MTOR Frame_Shift_Del p.F1720Lfs*33 0.13 TCGA-D8-A27V-01 1 112019957 112019957 A - C1orf162 Frame_Shift_Del p.K38Nfs*3 0.11 TCGA-D8-A27V-01 1 112029257 112029257 T - ADORA3 Frame_Shift_Del p.T275Pfs*26 0.09 TCGA-D8-A27V-01 1 114162410 114162410 A - MAGI3 Frame_Shift_Del p.K378Sfs*3 0.12 TCGA-D8-A27V-01 1 114442507 114442507 A - AP4B1 Intron 0.12 TCGA-D8-A27V-01 1 114453991 114453991 A - DCLRE1B Frame_Shift_Del p.I261Sfs*29 0.08 TCGA-D8-A27V-01 1 114680354 114680354 T - SYT6 Frame_Shift_Del p.K193Nfs*13 0.10 TCGA-D8-A27V-01 1 114964057 114964057 C - TRIM33 Splice_Site p.X687_splice 0.08 TCGA-D8-A27V-01 1 115226879 115226879 G A AMPD1 Missense_Mutation p.S196F 0.24 deleterious(0) probably_damaging(0.928) TCGA-D8-A27V-01 1 115251178 115251178 C - NRAS Frame_Shift_Del p.G183Dfs*6 0.09 TCGA-D8-A27V-01 1 11595584 11595584 G - PTCHD2 Frame_Shift_Del p.A1235Lfs*100 0.17 TCGA-D8-A27V-01 1 117087219 117087219 G A CD58 Silent p.I26I 0.33 TCGA-D8-A27V-01 1 117576575 117576575 C - CD101 Frame_Shift_Del p.L974Sfs*28 0.09 TCGA-D8-A27V-01 1 11808491 11808491 C - AGTRAP Frame_Shift_Del p.T64Pfs*128 0.10 TCGA-D8-A27V-01 1 118579420 118579420 A - SPAG17 Frame_Shift_Del p.Y1136Tfs*16 0.08 TCGA-D8-A27V-01 1 11863157 11863157 C G MTHFR Missense_Mutation p.R6T 0.21 deleterious_low_confidence(0.05) benign(0.047) TCGA-D8-A27V-01 1 11896049 11896049 C - CLCN6 Frame_Shift_Del p.N608Tfs*2 0.09 TCGA-D8-A27V-01 1 120301762 120301762 T - HMGCS2 Frame_Shift_Del p.I277Sfs*22 0.10 TCGA-D8-A27V-01 1 12089879 12089879 C - MIIP Frame_Shift_Del p.C260Afs*24 0.15 TCGA-D8-A27V-01 1 1250315 1250315 G - CPSF3L Frame_Shift_Del p.N204Tfs*25 0.16 TCGA-D8-A27V-01 1 14108569 14108569 C T PRDM2 Nonsense_Mutation p.Q1427* 0.19 TCGA-D8-A27V-01 1 144903091 144903091 A G PDE4DIP Missense_Mutation p.L934P 0.16 deleterious(0.03) probably_damaging(0.956) TCGA-D8-A27V-01 1 145580380 145580380 C T PIAS3 Intron 0.18 TCGA-D8-A27V-01 1 145580435 145580435 C T PIAS3 Intron 0.12 TCGA-D8-A27V-01 1 146631177 146631179 CTT - PRKAB2 In_Frame_Del p.K262del 0.11 TCGA-D8-A27V-01 1 146658623 146658623 T - FMO5 Frame_Shift_Del p.A487Lfs*13 0.10 TCGA-D8-A27V-01 1 147127326 147127326 T - ACP6 Frame_Shift_Del p.V200Sfs*12 0.08 TCGA-D8-A27V-01 1 149877443 149877443 G - SV2A Frame_Shift_Del p.S679Qfs*11 0.12 TCGA-D8-A27V-01 1 150199075 150199075 T - ANP32E Frame_Shift_Del p.G183Dfs*39 0.12 TCGA-D8-A27V-01 1 150230575 150230575 G - CA14 Frame_Shift_Del 0.11 TCGA-D8-A27V-01 1 150235484 150235484 C - CA14 Frame_Shift_Del p.K204Nfs*88 0.10 TCGA-D8-A27V-01 1 150526094 150526094 C - ADAMTSL4 Frame_Shift_Del p.Q211Kfs*21 0.12 TCGA-D8-A27V-01 1 150789842 150789842 A - ARNT Frame_Shift_Del p.S525Pfs*7 0.09 TCGA-D8-A27V-01 1 150916454 150916454 C - SETDB1 Frame_Shift_Del p.I313Ffs*5 0.08 TCGA-D8-A27V-01 1 150938731 150938731 T - CERS2 Frame_Shift_Del p.T346Qfs*20 0.09 TCGA-D8-A27V-01 1 151259530 151259530 C - ZNF687 Frame_Shift_Del p.P256Qfs*29 0.10 TCGA-D8-A27V-01 1 151400725 151400725 G - POGZ Frame_Shift_Del p.Q245Sfs*26 0.10 TCGA-D8-A27V-01 1 151678762 151678762 G - CELF3 Frame_Shift_Del p.P355Hfs*72 0.10 TCGA-D8-A27V-01 1 151752477 151752477 G - TDRKH Frame_Shift_Del p.P124Qfs*17 0.08 TCGA-D8-A27V-01 1 152058059 152058059 T - TCHHL1 Frame_Shift_Del p.K700Rfs*22 0.10 TCGA-D8-A27V-01 1 152081025 152081025 T - TCHH Frame_Shift_Del p.K1556Nfs*17 0.10 TCGA-D8-A27V-01 1 152085320 152085320 G - TCHH Frame_Shift_Del p.R125Gfs*24 0.09 TCGA-D8-A27V-01 1 152127235 152127235 C - RPTN Frame_Shift_Del p.N781Tfs*41 0.08 TCGA-D8-A27V-01 1 152127339 152127339 G - RPTN Frame_Shift_Del p.Q746Kfs*76 0.08 TCGA-D8-A27V-01 1 152129228 152129228 T - RPTN Frame_Shift_Del p.N116Tfs*95 0.08 TCGA-D8-A27V-01 1 153507724 153507724 T - S100A6 Frame_Shift_Del p.K31Rfs*4 0.10 TCGA-D8-A27V-01 1 153637777 153637777 T - ILF2 Frame_Shift_Del p.I166Sfs*8 0.09 TCGA-D8-A27V-01 1 153642646 153642646 C - ILF2 Splice_Site p.X22_splice 0.09 TCGA-D8-A27V-01 1 153750278 153750278 T - SLC27A3 Frame_Shift_Del p.F407Sfs*10 0.11 TCGA-D8-A27V-01 1 153800590 153800590 T - GATAD2B Frame_Shift_Del p.K78Nfs*30 0.08 TCGA-D8-A27V-01 1 153911514 153911514 G C DENND4B Silent p.L609L 0.13 TCGA-D8-A27V-01 1 153954600 153954600 T - RAB13 Frame_Shift_Del p.N196Tfs*20 0.09 TCGA-D8-A27V-01 1 154224002 154224002 G - UBAP2L Frame_Shift_Del p.L514* 0.09 TCGA-D8-A27V-01 1 154307000 154307000 A - ATP8B2 Frame_Shift_Del p.N291Tfs*15 0.08 TCGA-D8-A27V-01 1 154317949 154317949 T - ATP8B2 Frame_Shift_Del p.F908Sfs*71 0.09 TCGA-D8-A27V-01 1 154517322 154517322 T - TDRD10 Frame_Shift_Del p.F284Lfs*15 0.10 TCGA-D8-A27V-01 1 154917536 154917536 C - PBXIP1 Frame_Shift_Del p.H721Tfs*32 0.08 TCGA-D8-A27V-01 1 154924327 154924327 G - PBXIP1 Frame_Shift_Del p.P41Lfs*12 0.08 TCGA-D8-A27V-01 1 155177643 155177643 C - THBS3 Frame_Shift_Del p.A9Pfs*19 0.14 TCGA-D8-A27V-01 1 155231460 155231460 A - SCAMP3 Frame_Shift_Del p.F44Lfs*57 0.10 TCGA-D8-A27V-01 1 155231944 155231944 T - SCAMP3 5'UTR 0.09 TCGA-D8-A27V-01 1 155236569 155236569 G - CLK2 Frame_Shift_Del p.I263Sfs*23 0.09 TCGA-D8-A27V-01 1 155255018 155255018 C - HCN3 Frame_Shift_Del p.H385Tfs*22 0.11 TCGA-D8-A27V-01 1 155896518 155896518 G - KIAA0907 Frame_Shift_Del p.I211Sfs*29 0.08 TCGA-D8-A27V-01 1 155984806 155984806 G C SSR2 Missense_Mutation p.F103L 0.15 tolerated(0.05) benign(0.277) TCGA-D8-A27V-01 1 156047138 156047138 G - MEX3A Frame_Shift_Del p.R264Afs*214 0.08 TCGA-D8-A27V-01 1 156047265 156047265 G - MEX3A Frame_Shift_Del p.G222Afs*3 0.09 TCGA-D8-A27V-01 1 156256232 156256232 C - TMEM79 Frame_Shift_Del p.P314Lfs*12 0.11 TCGA-D8-A27V-01 1 156563832 156563832 C T APOA1BP Silent p.L275L 0.19 TCGA-D8-A27V-01 1 156721982 156721982 C G HDGF Intron 0.21 TCGA-D8-A27V-01 1 156812030 156812030 C - INSRR Frame_Shift_Del p.E1091Kfs*2 0.10 TCGA-D8-A27V-01 1 156921427 156921427 T - ARHGEF11 Frame_Shift_Del p.E622Nfs*40 0.08 TCGA-D8-A27V-01 1 157069072 157069072 C T ETV3L Missense_Mutation p.E53K 0.13 deleterious(0.01) benign(0.394) TCGA-D8-A27V-01 1 157803200 157803200 C - CD5L Frame_Shift_Del p.G274Efs*95 0.08 TCGA-D8-A27V-01 1 158054269 158054269 C - KIRREL Frame_Shift_Del p.H139Tfs*35 0.09 TCGA-D8-A27V-01 1 158595939 158595939 T - SPTA1 Frame_Shift_Del p.K1969Nfs*23 0.08 TCGA-D8-A27V-01 1 158605777 158605777 C - SPTA1 Frame_Shift_Del p.Q1787Kfs*33 0.11 TCGA-D8-A27V-01 1 158653211 158653211 T - SPTA1 Frame_Shift_Del p.T114Qfs*20 0.12 TCGA-D8-A27V-01 1 158908985 158908985 C - PYHIN1 Frame_Shift_Del p.P177Hfs*19 0.08 TCGA-D8-A27V-01 1 158988142 158988142 A - IFI16 Frame_Shift_Del p.I227* 0.10 TCGA-D8-A27V-01 1 159038395 159038395 T - AIM2 Frame_Shift_Del p.K120Sfs*40 0.09 TCGA-D8-A27V-01 1 159284004 159284004 G A OR10J3 Missense_Mutation p.S149L 0.14 deleterious(0.03) possibly_damaging(0.542) TCGA-D8-A27V-01 1 159778782 159778782 C - FCRL6 Frame_Shift_Del p.S119Lfs*10 0.09 TCGA-D8-A27V-01 1 159842308 159842308 T - CCDC19 Frame_Shift_Del p.A542Lfs*9 0.10 TCGA-D8-A27V-01 1 160134106 160134106 T - ATP1A4 Frame_Shift_Del p.F315Lfs*38 0.11 TCGA-D8-A27V-01 1 160195422 160195422 C G DCAF8 Missense_Mutation p.E368Q 0.10 tolerated(0.16) benign(0.018) TCGA-D8-A27V-01 1 160326427 160326427 C - NCSTN Frame_Shift_Del p.T561Pfs*14 0.08 TCGA-D8-A27V-01 1 160535231 160535231 G - CD84 Frame_Shift_Del p.Y118Tfs*24 0.09 TCGA-D8-A27V-01 1 160920834 160920834 T - ITLN2 Frame_Shift_Del p.K147Rfs*33 0.08 TCGA-D8-A27V-01 1 160970494 160970494 C - F11R Frame_Shift_Del p.T106Hfs*46 0.09 TCGA-D8-A27V-01 1 161012662 161012662 T - USF1 Frame_Shift_Del p.T7Qfs*53 0.10 TCGA-D8-A27V-01 1 161044082 161044082 A - PVRL4 Frame_Shift_Del p.F361Sfs*22 0.09 TCGA-D8-A27V-01 1 161044490 161044490 G - PVRL4 Frame_Shift_Del p.P304Hfs*2 0.10 TCGA-D8-A27V-01 1 161128303 161128303 G - UFC1 3'UTR 0.08 TCGA-D8-A27V-01 1 161476156 161476156 C - FCGR2A Frame_Shift_Del p.P48Rfs*11 0.09 TCGA-D8-A27V-01 1 161512832 161512832 A - FCGR3A Frame_Shift_Del p.F281Lfs*71 0.09 TCGA-D8-A27V-01 1 161953604 161953604 T - OLFML2B Frame_Shift_Del p.N705Tfs*20 0.05 TCGA-D8-A27V-01 1 161953636 161953636 G - OLFML2B Frame_Shift_Del p.N695Tfs*30 0.08 TCGA-D8-A27V-01 1 162469917 162469917 T - UHMK1 Frame_Shift_Del p.L149Ffs*41 0.08 TCGA-D8-A27V-01 1 162773265 162773265 T - HSD17B7 Frame_Shift_Del p.L230* 0.08 TCGA-D8-A27V-01 1 162829441 162829441 T - C1orf110 5'UTR 0.12 TCGA-D8-A27V-01 1 163044269 163044269 C - RGS4 Frame_Shift_Del p.P277Rfs*35 0.10 TCGA-D8-A27V-01 1 16372149 16372149 C - CLCNKB Frame_Shift_Del p.M67Wfs*60 0.13 TCGA-D8-A27V-01 1 167097502 167097502 C - DUSP27 Frame_Shift_Del p.P1046Qfs*48 0.09 TCGA-D8-A27V-01 1 167825472 167825472 T - ADCY10 Frame_Shift_Del p.Q701Rfs*15 0.11 TCGA-D8-A27V-01 1 168034845 168034845 C T DCAF6 Silent p.F819F 0.17 TCGA-D8-A27V-01 1 168215915 168215915 G C SFT2D2 3'UTR 0.22 TCGA-D8-A27V-01 1 168550372 168550372 A - XCL1 Frame_Shift_Del p.K87Nfs*8 0.11 TCGA-D8-A27V-01 1 168550424 168550424 A - XCL1 Frame_Shift_Del p.Q104Hfs*7 0.10 TCGA-D8-A27V-01 1 169390953 169390953 A - CCDC181 Frame_Shift_Del p.L239Cfs*91 0.09 TCGA-D8-A27V-01 1 169497294 169497294 T - F5 Frame_Shift_Del p.M1820Cfs*7 0.08 TCGA-D8-A27V-01 1 169511067 169511067 G - F5 Frame_Shift_Del p.S1088Lfs*7 0.09 TCGA-D8-A27V-01 1 170501276 170501276 G - GORAB 5'UTR 0.09 TCGA-D8-A27V-01 1 171621590 171621590 G - MYOC Frame_Shift_Del p.S55Vfs*29 0.09 TCGA-D8-A27V-01 1 172376973 172376973 T - DNM3 Frame_Shift_Del p.L862* 0.08 TCGA-D8-A27V-01 1 172501668 172501668 G - SUCO 5'Flank 0.11 TCGA-D8-A27V-01 1 173551076 173551076 T - SLC9C2 Frame_Shift_Del p.I238Sfs*14 0.09 TCGA-D8-A27V-01 1 173806109 173806109 A - DARS2 Frame_Shift_Del p.E232Dfs*19 0.08 TCGA-D8-A27V-01 1 173912615 173912615 T - RC3H1 Frame_Shift_Del p.R1034Gfs*10 0.09 TCGA-D8-A27V-01 1 175086256 175086256 G A TNN Silent p.L767L 0.12 TCGA-D8-A27V-01 1 175106018 175106018 T - TNN Frame_Shift_Del p.L1164Yfs*26 0.12 TCGA-D8-A27V-01 1 177906457 177906457 A - SEC16B Frame_Shift_Del p.Y799Tfs*17 0.11 TCGA-D8-A27V-01 1 179078068 179078068 A - ABL2 Frame_Shift_Del p.P779Qfs*21 0.11 TCGA-D8-A27V-01 1 179981152 179981152 A - CEP350 Frame_Shift_Del p.E447Sfs*55 0.10 TCGA-D8-A27V-01 1 18152983 18152983 G C ACTL8 Missense_Mutation p.R357P 0.20 deleterious(0) probably_damaging(0.959) TCGA-D8-A27V-01 1 181548294 181548294 T - CACNA1E Frame_Shift_Del p.F235Lfs*19 0.08 TCGA-D8-A27V-01 1 181695297 181695297 G A CACNA1E Missense_Mutation p.E747K 0.16 tolerated(0.39) benign(0.305) TCGA-D8-A27V-01 1 181701993 181701993 G A CACNA1E Missense_Mutation p.R924H 0.27 tolerated(0.11) possibly_damaging(0.522) TCGA-D8-A27V-01 1 182025512 182025512 T - ZNF648 Frame_Shift_Del p.N545Ifs*72 0.11 TCGA-D8-A27V-01 1 182545488 182545488 A - RNASEL Frame_Shift_Del p.Y648Mfs*16 0.09 TCGA-D8-A27V-01 1 182572447 182572447 C - RGS16 Frame_Shift_Del p.I25Sfs*46 0.10 TCGA-D8-A27V-01 1 183514304 183514304 C - SMG7 Frame_Shift_Del p.T699Hfs*20 0.09 TCGA-D8-A27V-01 1 183532637 183532637 G A NCF2 Silent p.L370L 0.17 TCGA-D8-A27V-01 1 183602245 183602245 G - ARPC5 Frame_Shift_Del p.P66Lfs*9 0.08 TCGA-D8-A27V-01 1 183920243 183920243 A - COLGALT2 Frame_Shift_Del p.F345Sfs*2 0.09 TCGA-D8-A27V-01 1 185089207 185089207 T - TRMT1L Frame_Shift_Del p.R716Efs*6 0.08 TCGA-D8-A27V-01 1 185274769 185274769 T - IVNS1ABP Frame_Shift_Del p.T222Pfs*16 0.10 TCGA-D8-A27V-01 1 186062755 186062755 C - HMCN1 Frame_Shift_Del p.P3384Lfs*18 0.09 TCGA-D8-A27V-01 1 186302384 186302384 A - TPR Frame_Shift_Del p.F1775Lfs*23 0.09 TCGA-D8-A27V-01 1 186645747 186645747 C - PTGS2 Frame_Shift_Del p.Q275Rfs*10 0.09 TCGA-D8-A27V-01 1 190068018 190068018 T - BRINP3 Frame_Shift_Del p.V478Sfs*20 0.10 TCGA-D8-A27V-01 1 192998740 192998740 C A UCHL5 Silent p.L98L 0.17 TCGA-D8-A27V-01 1 19467865 19467865 G - UBR4 Frame_Shift_Del p.L2822* 0.11 TCGA-D8-A27V-01 1 19524204 19524204 T - UBR4 Frame_Shift_Del p.M285Cfs*5 0.09 TCGA-D8-A27V-01 1 19746177 19746177 T - CAPZB Frame_Shift_Del p.N24Tfs*5 0.10 TCGA-D8-A27V-01 1 200776602 200776602 T - CAMSAP2 Frame_Shift_Del p.Q169Kfs*17 0.10 TCGA-D8-A27V-01 1 201028374 201028374 G - CACNA1S Frame_Shift_Del p.F1157Sfs*9 0.08 TCGA-D8-A27V-01 1 201123014 201123014 A - TMEM9 Frame_Shift_Del p.L13Cfs*97 0.08 TCGA-D8-A27V-01 1 201282464 201282464 C G PKP1 Silent p.L159L 0.20 TCGA-D8-A27V-01 1 201832695 201832695 C - IPO9 Frame_Shift_Del p.P531Hfs*8 0.09 TCGA-D8-A27V-01 1 201859635 201859635 T - SHISA4 Frame_Shift_Del p.A101Pfs*32 0.08 TCGA-D8-A27V-01 1 201869474 201869474 C - LMOD1 Frame_Shift_Del p.V223* 0.08 TCGA-D8-A27V-01 1 201980402 201980402 C - ELF3 Frame_Shift_Del p.Q48Rfs*107 0.10 TCGA-D8-A27V-01 1 202097429 202097429 G - GPR37L1 Frame_Shift_Del p.G398Afs*158 0.09 TCGA-D8-A27V-01 1 202287880 202287880 C - LGR6 Frame_Shift_Del p.L818Cfs*34 0.12 TCGA-D8-A27V-01 1 202731867 202731867 T - KDM5B Frame_Shift_Del p.K293Rfs*47 0.08 TCGA-D8-A27V-01 1 204135369 204135369 C - REN Frame_Shift_Del p.G18Afs*29 0.08 TCGA-D8-A27V-01 1 20416327 20416327 G - PLA2G5 Frame_Shift_Del p.G78Afs*28 0.08 TCGA-D8-A27V-01 1 204170836 204170836 C - GOLT1A Frame_Shift_Del p.G74Vfs*64 0.10 TCGA-D8-A27V-01 1 20417128 20417128 A - PLA2G5 Frame_Shift_Del p.N121Tfs*95 0.08 TCGA-D8-A27V-01 1 204197861 204197861 T - PLEKHA6 Frame_Shift_Del p.K960Nfs*92 0.10 TCGA-D8-A27V-01 1 204966366 204966366 A - NFASC Frame_Shift_Del p.I951Lfs*114 0.10 TCGA-D8-A27V-01 1 204966395 204966395 C - NFASC Frame_Shift_Del p.I962Sfs*103 0.09 TCGA-D8-A27V-01 1 205028786 205028786 C - CNTN2 Frame_Shift_Del p.L259Wfs*72 0.09 TCGA-D8-A27V-01 1 205308833 205308833 G - KLHDC8A Frame_Shift_Del p.M161Cfs*58 0.09 TCGA-D8-A27V-01 1 205568346 205568346 T - MFSD4 Frame_Shift_Del p.F487Sfs*32 0.08 TCGA-D8-A27V-01 1 205892234 205892234 C - SLC26A9 Frame_Shift_Del p.R584Gfs*5 0.08 TCGA-D8-A27V-01 1 206664151 206664151 G - IKBKE Splice_Site p.X565_splice 0.13 TCGA-D8-A27V-01 1 206905976 206905976 A - MAPKAPK2 Frame_Shift_Del p.K374Rfs*11 0.12 TCGA-D8-A27V-01 1 207262826 207262826 G - C4BPB 5'UTR 0.08 TCGA-D8-A27V-01 1 207867823 207867823 T - CR1L Frame_Shift_Del p.F197Lfs*54 0.09 TCGA-D8-A27V-01 1 208061156 208061156 T - CD34 Frame_Shift_Del p.N362Tfs*158 0.08 TCGA-D8-A27V-01 1 208062930 208062930 G - CD34 Frame_Shift_Del p.R212Efs*27 0.11 TCGA-D8-A27V-01 1 209791900 209791900 G - LAMB3 Frame_Shift_Del p.Q936Rfs*94 0.08 TCGA-D8-A27V-01 1 20980125 20980125 G - DDOST Frame_Shift_Del p.L330* 0.11 TCGA-D8-A27V-01 1 209879268 209879268 A - HSD11B1 Frame_Shift_Del p.E69Kfs*28 0.08 TCGA-D8-A27V-01 1 210010373 210010373 C G DIEXF Missense_Mutation p.F293L 0.24 tolerated(0.12) benign(0.002) TCGA-D8-A27V-01 1 210573839 210573839 G - HHAT Frame_Shift_Del p.M103Cfs*34 0.08 TCGA-D8-A27V-01 1 210637955 210637955 C - HHAT Frame_Shift_Del p.R324Afs*3 0.08 TCGA-D8-A27V-01 1 210970868 210970868 C G KCNH1 Missense_Mutation p.E633Q 0.10 deleterious(0.02) possibly_damaging(0.89) TCGA-D8-A27V-01 1 21143962 21143962 C T EIF4G3 Missense_Mutation p.E1430K 0.31 deleterious(0.01) benign(0.066) TCGA-D8-A27V-01 1 211952331 211952331 T - LPGAT1 Frame_Shift_Del p.A262Lfs*4 0.09 TCGA-D8-A27V-01 1 21212703 21212703 A - EIF4G3 Frame_Shift_Del p.T757Pfs*12 0.09 TCGA-D8-A27V-01 1 212209199 212209199 T - DTL 5'UTR 0.11 TCGA-D8-A27V-01 1 212241661 212241661 G A DTL Missense_Mutation p.R270Q 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-D8-A27V-01 1 212519249 212519249 A - PPP2R5A Frame_Shift_Del p.K227Nfs*27 0.08 TCGA-D8-A27V-01 1 214560226 214560226 G - PTPN14 Frame_Shift_Del p.Q343Sfs*34 0.11 TCGA-D8-A27V-01 1 21563240 21563240 T - ECE1 Frame_Shift_Del p.K496Rfs*8 0.10 TCGA-D8-A27V-01 1 21586882 21586882 T - ECE1 Frame_Shift_Del p.N166Tfs*6 0.08 TCGA-D8-A27V-01 1 216051172 216051172 G - USH2A Frame_Shift_Del p.P2870Qfs*4 0.08 TCGA-D8-A27V-01 1 21880565 21880565 G - ALPL 5'UTR 0.12 TCGA-D8-A27V-01 1 220345231 220345231 T - RAB3GAP2 Frame_Shift_Del p.K859Nfs*32 0.09 TCGA-D8-A27V-01 1 22083040 22083040 T - USP48 Frame_Shift_Del p.D138Ifs*83 0.11 TCGA-D8-A27V-01 1 220835425 220835425 G - MARK1 Frame_Shift_Del p.V770Ffs*20 0.10 TCGA-D8-A27V-01 1 22186687 22186687 C - HSPG2 Frame_Shift_Del p.G1666Afs*22 0.13 TCGA-D8-A27V-01 1 222717116 222717116 G - HHIPL2 Frame_Shift_Del p.P246Lfs*18 0.10 TCGA-D8-A27V-01 1 222798136 222798136 A - MIA3 Frame_Shift_Del p.D100Ifs*2 0.09 TCGA-D8-A27V-01 1 222802190 222802190 A - MIA3 Frame_Shift_Del p.K544Sfs*24 0.10 TCGA-D8-A27V-01 1 223116275 223116275 C - DISP1 Frame_Shift_Del p.Q38Sfs*13 0.08 TCGA-D8-A27V-01 1 223175739 223175739 C - DISP1 Frame_Shift_Del p.Q335Sfs*27 0.12 TCGA-D8-A27V-01 1 2235759 2235759 C - SKI Frame_Shift_Del p.P502Rfs*70 0.10 TCGA-D8-A27V-01 1 223938641 223938641 G - CAPN2 Frame_Shift_Del p.G289Efs*19 0.09 TCGA-D8-A27V-01 1 223983965 223983965 A - TP53BP2 Frame_Shift_Del p.L759Yfs*7 0.08 TCGA-D8-A27V-01 1 223986225 223986225 C - TP53BP2 Frame_Shift_Del p.G547Efs*91 0.10 TCGA-D8-A27V-01 1 224477262 224477262 T - NVL Frame_Shift_Del p.N500Ifs*36 0.09 TCGA-D8-A27V-01 1 225533762 225533762 G A DNAH14 Missense_Mutation p.E2697K 0.17 tolerated(0.06) benign(0.005) TCGA-D8-A27V-01 1 226342397 226342397 T - ACBD3 Frame_Shift_Del p.E348Nfs*21 0.08 TCGA-D8-A27V-01 1 226485450 226485450 T - LIN9 Frame_Shift_Del p.G60Afs*29 0.09 TCGA-D8-A27V-01 1 227076566 227076566 C - PSEN2 Frame_Shift_Del p.T203Pfs*4 0.08 TCGA-D8-A27V-01 1 227171819 227171819 C T ADCK3 Silent p.F427F 0.19 TCGA-D8-A27V-01 1 228003834 228003834 C - PRSS38 Frame_Shift_Del p.P65Lfs*51 0.07 TCGA-D8-A27V-01 1 228238498 228238498 G - WNT3A Frame_Shift_Del p.G153Vfs*31 0.09 TCGA-D8-A27V-01 1 228401137 228401137 G T C1orf145 Silent p.A75A 0.12 TCGA-D8-A27V-01 1 228481144 228481144 C - OBSCN Frame_Shift_Del p.V4084Wfs*18 0.10 TCGA-D8-A27V-01 1 228582445 228582445 C - TRIM11 Frame_Shift_Del p.P457Rfs*57 0.12 TCGA-D8-A27V-01 1 229663006 229663006 C - ABCB10 Frame_Shift_Del p.W565Cfs*2 0.11 TCGA-D8-A27V-01 1 230468691 230468691 C - PGBD5 Frame_Shift_Del p.G322Afs*7 0.11 TCGA-D8-A27V-01 1 2333724 2333724 G - RER1 Frame_Shift_Del p.I149Ffs*3 0.08 TCGA-D8-A27V-01 1 233507861 233507861 C - MLK4 Frame_Shift_Del p.P545Rfs*6 0.11 TCGA-D8-A27V-01 1 233518107 233518107 C - MLK4 Frame_Shift_Del p.P921Lfs*30 0.08 TCGA-D8-A27V-01 1 235872523 235872523 A - LYST Frame_Shift_Del p.F3337Lfs*9 0.09 TCGA-D8-A27V-01 1 236176841 236176841 G - NID1 Frame_Shift_Del p.I759Sfs*45 0.08 TCGA-D8-A27V-01 1 236719429 236719429 T - HEATR1 Frame_Shift_Del p.T1829Lfs*17 0.10 TCGA-D8-A27V-01 1 237632412 237632412 C G RYR2 Missense_Mutation p.R545G 0.12 possibly_damaging(0.453) TCGA-D8-A27V-01 1 237656282 237656282 T - RYR2 Frame_Shift_Del p.C620Afs*30 0.09 TCGA-D8-A27V-01 1 240370660 240370660 A - FMN2 Frame_Shift_Del p.N851Tfs*36 0.10 TCGA-D8-A27V-01 1 240519133 240519133 G - FMN2 Frame_Shift_Del p.V1597Yfs*35 0.09 TCGA-D8-A27V-01 1 241729857 241729857 G C KMO Missense_Mutation p.D252H 0.18 deleterious(0.01) possibly_damaging(0.465) TCGA-D8-A27V-01 1 241798588 241798588 T - CHML Frame_Shift_Del p.S161Vfs*7 0.08 TCGA-D8-A27V-01 1 243349607 243349607 T - CEP170 Frame_Shift_Del p.K409Sfs*34 0.08 TCGA-D8-A27V-01 1 24394459 24394459 C - MYOM3 Splice_Site p.X1119_splice 0.12 TCGA-D8-A27V-01 1 2445809 2445809 G - PANK4 Frame_Shift_Del p.L491* 0.11 TCGA-D8-A27V-01 1 245026021 245026021 T - HNRNPU Frame_Shift_Del p.T235Qfs*104 0.09 TCGA-D8-A27V-01 1 245180567 245180567 A - EFCAB2 Frame_Shift_Del p.I19Sfs*18 0.08 TCGA-D8-A27V-01 1 246027125 246027125 T - SMYD3 Frame_Shift_Del p.I293Lfs*4 0.10 TCGA-D8-A27V-01 1 24727856 24727856 T - STPG1 Frame_Shift_Del p.N8Mfs*36 0.13 TCGA-D8-A27V-01 1 24782653 24782653 G - NIPAL3 Frame_Shift_Del p.A222Pfs*23 0.08 TCGA-D8-A27V-01 1 248084548 248084548 C - OR2T8 Frame_Shift_Del p.M79Wfs*6 0.11 TCGA-D8-A27V-01 1 248512613 248512613 C - OR14C36 Frame_Shift_Del p.S181Lfs*3 0.09 TCGA-D8-A27V-01 1 248525486 248525486 G - OR2T4 Frame_Shift_Del p.G202Dfs*16 0.09 TCGA-D8-A27V-01 1 248902976 248902976 C - LYPD8 Frame_Shift_Del p.G59Afs*60 0.08 TCGA-D8-A27V-01 1 24927443 24927443 T - NCMAP Frame_Shift_Del p.I32Mfs*17 0.09 TCGA-D8-A27V-01 1 25569109 25569109 T - C1orf63 Frame_Shift_Del p.S282Vfs*20 0.10 TCGA-D8-A27V-01 1 26138266 26138266 G - SEPN1 Frame_Shift_Del p.E394Sfs*? 0.13 TCGA-D8-A27V-01 1 26227540 26227540 G - STMN1 Intron 0.08 TCGA-D8-A27V-01 1 26228047 26228047 T - STMN1 Frame_Shift_Del p.M105Wfs*60 0.12 TCGA-D8-A27V-01 1 26371586 26371586 C - SLC30A2 Frame_Shift_Del p.G58Vfs*19 0.09 TCGA-D8-A27V-01 1 26646699 26646699 A - CD52 Frame_Shift_Del p.T32Pfs*10 0.09 TCGA-D8-A27V-01 1 26646811 26646811 T - CD52 3'UTR 0.08 TCGA-D8-A27V-01 1 27120798 27120798 C - PIGV Frame_Shift_Del p.L93Wfs*10 0.08 TCGA-D8-A27V-01 1 27206121 27206121 C - GPN2 3'UTR 0.09 TCGA-D8-A27V-01 1 27682573 27682573 G - MAP3K6 Frame_Shift_Del p.Q1219Rfs*10 0.09 TCGA-D8-A27V-01 1 27708298 27708298 G - CD164L2 Frame_Shift_Del p.T116Pfs*35 0.09 TCGA-D8-A27V-01 1 27742486 27742486 T - WASF2 Frame_Shift_Del p.K177Sfs*15 0.09 TCGA-D8-A27V-01 1 28293225 28293225 G - XKR8 Frame_Shift_Del p.G235Afs*29 0.12 TCGA-D8-A27V-01 1 28343704 28343704 G - EYA3 Frame_Shift_Del p.N183Ifs*7 0.09 TCGA-D8-A27V-01 1 28477549 28477549 G - PTAFR 5'UTR 0.13 TCGA-D8-A27V-01 1 28527808 28527808 T - DNAJC8 Frame_Shift_Del p.N238Ifs*5 0.09 TCGA-D8-A27V-01 1 28861645 28861645 A - RCC1 Frame_Shift_Del p.K207Rfs*10 0.08 TCGA-D8-A27V-01 1 28931911 28931911 T - TAF12 Frame_Shift_Del p.A142Lfs*13 0.09 TCGA-D8-A27V-01 1 29338403 29338403 A - EPB41 Frame_Shift_Del p.K273Sfs*14 0.09 TCGA-D8-A27V-01 1 29602178 29602178 C - PTPRU Frame_Shift_Del p.Y456Ifs*6 0.10 TCGA-D8-A27V-01 1 29606064 29606064 T - PTPRU Frame_Shift_Del p.F554Sfs*30 0.08 TCGA-D8-A27V-01 1 29644307 29644307 C T PTPRU Silent p.I1197I 0.23 TCGA-D8-A27V-01 1 31215304 31215304 G - LAPTM5 Frame_Shift_Del p.I60Mfs*4 0.08 TCGA-D8-A27V-01 1 31347253 31347253 G - SDC3 Frame_Shift_Del p.K352Rfs*36 0.09 TCGA-D8-A27V-01 1 31467982 31467982 A - PUM1 Frame_Shift_Del p.L269* 0.08 TCGA-D8-A27V-01 1 31838762 31838762 A - FABP3 Frame_Shift_Del p.C125Afs*78 0.18 TCGA-D8-A27V-01 1 33235362 33235362 C - KIAA1522 Frame_Shift_Del p.P226Rfs*10 0.11 TCGA-D8-A27V-01 1 3342672 3342672 C - PRDM16 Frame_Shift_Del p.S1057Qfs*9 0.12 TCGA-D8-A27V-01 1 3350263 3350263 T - PRDM16 Frame_Shift_Del p.S1241Pfs*18 0.10 TCGA-D8-A27V-01 1 33623899 33623899 G - TRIM62 Frame_Shift_Del p.L278Cfs*20 0.11 TCGA-D8-A27V-01 1 34006878 34006878 G - CSMD2 Frame_Shift_Del p.N2960Mfs*15 0.08 TCGA-D8-A27V-01 1 34066487 34066487 C - CSMD2 Frame_Shift_Del p.I2281Sfs*4 0.18 TCGA-D8-A27V-01 1 34258096 34258096 A - CSMD2 Frame_Shift_Del p.L453Wfs*8 0.08 TCGA-D8-A27V-01 1 35250621 35250621 C - GJB3 Frame_Shift_Del p.S88Rfs*180 0.08 TCGA-D8-A27V-01 1 35484980 35484980 G - ZMYM6 Frame_Shift_Del p.K135Rfs*12 0.09 TCGA-D8-A27V-01 1 3555327 3555327 T - WRAP73 Frame_Shift_Del p.A134Lfs*27 0.09 TCGA-D8-A27V-01 1 36217049 36217049 A - CLSPN Frame_Shift_Del p.F610Lfs*13 0.10 TCGA-D8-A27V-01 1 36228780 36228780 T - CLSPN Frame_Shift_Del p.N242Tfs*3 0.08 TCGA-D8-A27V-01 1 36557692 36557692 G - ADPRHL2 Frame_Shift_Del p.E234Sfs*13 0.08 TCGA-D8-A27V-01 1 3669305 3669305 A - CCDC27 Frame_Shift_Del p.K88Sfs*122 0.16 TCGA-D8-A27V-01 1 37975075 37975075 G A MEAF6 Missense_Mutation p.S92F 0.17 deleterious(0) probably_damaging(0.992) TCGA-D8-A27V-01 1 38095265 38095265 C - RSPO1 Frame_Shift_Del p.I24Sfs*68 0.11 TCGA-D8-A27V-01 1 38348533 38348533 T - INPP5B Frame_Shift_Del p.V460* 0.09 TCGA-D8-A27V-01 1 38450394 38450394 T - SF3A3 Frame_Shift_Del p.S121Vfs*32 0.08 TCGA-D8-A27V-01 1 38465007 38465007 G - FHL3 Frame_Shift_Del p.Y27Tfs*49 0.09 TCGA-D8-A27V-01 1 39797161 39797161 T - MACF1 Intron 0.10 TCGA-D8-A27V-01 1 39824862 39824862 A - MACF1 Frame_Shift_Del p.V1997* 0.10 TCGA-D8-A27V-01 1 39876765 39876765 C - KIAA0754 Frame_Shift_Del p.D144Tfs*15 0.10 TCGA-D8-A27V-01 1 41503109 41503109 T - SCMH1 Frame_Shift_Del p.R525Gfs*28 0.08 TCGA-D8-A27V-01 1 41536312 41536312 G - SCMH1 Frame_Shift_Del p.Q344Rfs*20 0.09 TCGA-D8-A27V-01 1 41608636 41608636 T - SCMH1 Frame_Shift_Del p.N99Mfs*33 0.09 TCGA-D8-A27V-01 1 42657087 42657087 G - FOXJ3 Frame_Shift_Del p.P413Lfs*23 0.08 TCGA-D8-A27V-01 1 43124973 43124973 G - PPIH Intron 0.09 TCGA-D8-A27V-01 1 43787093 43787093 T - TIE1 Frame_Shift_Del p.C1059Vfs*27 0.10 TCGA-D8-A27V-01 1 43852293 43852293 T - MED8 Frame_Shift_Del p.I154Sfs*101 0.09 TCGA-D8-A27V-01 1 43895987 43895987 G - SZT2 Frame_Shift_Del p.P1414Lfs*5 0.13 TCGA-D8-A27V-01 1 44425952 44425952 T - IPO13 Frame_Shift_Del p.I688Sfs*5 0.11 TCGA-D8-A27V-01 1 44443642 44443642 T - ATP6V0B Intron 0.08 TCGA-D8-A27V-01 1 44685514 44685514 A - DMAP1 Frame_Shift_Del p.K339Rfs*14 0.12 TCGA-D8-A27V-01 1 45293556 45293556 G - PTCH2 Frame_Shift_Del p.R673Afs*27 0.14 TCGA-D8-A27V-01 1 45294208 45294208 G - PTCH2 Frame_Shift_Del p.I521Sfs*13 0.09 TCGA-D8-A27V-01 1 45475046 45475046 A - HECTD3 Frame_Shift_Del p.I328Mfs*15 0.10 TCGA-D8-A27V-01 1 45478998 45478998 T - UROD Frame_Shift_Del p.F84Sfs*15 0.08 TCGA-D8-A27V-01 1 45480621 45480621 G - UROD Frame_Shift_Del p.K297Rfs*3 0.11 TCGA-D8-A27V-01 1 45795036 45795036 T - MUTYH Frame_Shift_Del p.N528Ifs*40 0.09 TCGA-D8-A27V-01 1 45811171 45811171 G - TESK2 Frame_Shift_Del p.H353Tfs*28 0.11 TCGA-D8-A27V-01 1 46073432 46073432 G - NASP Frame_Shift_Del p.V284* 0.08 TCGA-D8-A27V-01 1 46521525 46521525 T - PIK3R3 Frame_Shift_Del p.M295* 0.12 TCGA-D8-A27V-01 1 47037771 47037771 C - MKNK1 Frame_Shift_Del p.D153Tfs*20 0.09 TCGA-D8-A27V-01 1 49202000 49202000 T - BEND5 Frame_Shift_Del p.N340Tfs*26 0.10 TCGA-D8-A27V-01 1 51787448 51787448 G - TTC39A Frame_Shift_Del p.L35Wfs*28 0.09 TCGA-D8-A27V-01 1 51873933 51873933 T - EPS15 Frame_Shift_Del p.A450Lfs*5 0.08 TCGA-D8-A27V-01 1 52238393 52238393 A - OSBPL9 Frame_Shift_Del p.K400Rfs*2 0.08 TCGA-D8-A27V-01 1 52242562 52242562 T - OSBPL9 Frame_Shift_Del p.F421Lfs*8 0.08 TCGA-D8-A27V-01 1 52306126 52306126 T - NRD1 Frame_Shift_Del p.G135Vfs*30 0.09 TCGA-D8-A27V-01 1 52489181 52489181 A - TXNDC12 Frame_Shift_Del p.Y141Mfs*11 0.09 TCGA-D8-A27V-01 1 52859118 52859118 T - ORC1 Frame_Shift_Del p.K360Rfs*27 0.10 TCGA-D8-A27V-01 1 52896816 52896816 T - ZCCHC11 Frame_Shift_Del p.N1527Mfs*36 0.13 TCGA-D8-A27V-01 1 52911506 52911506 T - ZCCHC11 Frame_Shift_Del p.R1259Gfs*25 0.09 TCGA-D8-A27V-01 1 53373585 53373585 C - ECHDC2 Frame_Shift_Del p.V107Wfs*11 0.10 TCGA-D8-A27V-01 1 53555528 53555528 G - SLC1A7 Frame_Shift_Del p.S436Pfs*25 0.11 TCGA-D8-A27V-01 1 55050333 55050333 G - ACOT11 Frame_Shift_Del p.A14Pfs*36 0.10 TCGA-D8-A27V-01 1 57189307 57189307 T - C1orf168 Frame_Shift_Del p.K643Rfs*4 0.10 TCGA-D8-A27V-01 1 5923362 5923362 T - NPHP4 Frame_Shift_Del p.N1415Tfs*7 0.09 TCGA-D8-A27V-01 1 6203917 6203917 T - CHD5 Frame_Shift_Del p.K670Sfs*120 0.11 TCGA-D8-A27V-01 1 6246852 6246852 T - RPL22 Frame_Shift_Del p.K89Nfs*3 0.08 TCGA-D8-A27V-01 1 62737222 62737222 T - KANK4 Frame_Shift_Del p.K647Rfs*112 0.10 TCGA-D8-A27V-01 1 6324753 6324753 G - ACOT7 Frame_Shift_Del p.E350Rfs*19 0.09 TCGA-D8-A27V-01 1 6409878 6409878 C - ACOT7 Frame_Shift_Del p.T75Pfs*3 0.13 TCGA-D8-A27V-01 1 64624818 64624818 A - ROR1 Frame_Shift_Del p.K444Nfs*8 0.09 TCGA-D8-A27V-01 1 65139045 65139045 A - CACHD1 Frame_Shift_Del p.N825Mfs*10 0.12 TCGA-D8-A27V-01 1 65268718 65268718 T - RAVER2 Frame_Shift_Del p.L390Yfs*3 0.09 TCGA-D8-A27V-01 1 65305357 65305357 T - JAK1 Frame_Shift_Del p.K924Rfs*6 0.10 TCGA-D8-A27V-01 1 65335085 65335085 C G JAK1 Missense_Mutation p.E186Q 0.27 tolerated(0.15) benign(0.181) TCGA-D8-A27V-01 1 65895586 65895586 C - LEPROT Frame_Shift_Del p.I47Sfs*47 0.08 TCGA-D8-A27V-01 1 6592057 6592057 A - NOL9 Frame_Shift_Del p.S540Lfs*6 0.10 TCGA-D8-A27V-01 1 6647335 6647335 C - ZBTB48 Frame_Shift_Del p.K405Sfs*133 0.10 TCGA-D8-A27V-01 1 67452145 67452145 T - MIER1 3'Flank 0.08 TCGA-D8-A27V-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.09 TCGA-D8-A27V-01 1 70641578 70641578 C - LRRC40 Frame_Shift_Del p.D298Ifs*4 0.10 TCGA-D8-A27V-01 1 75038820 75038820 G - C1orf173 Frame_Shift_Del p.I859* 0.10 TCGA-D8-A27V-01 1 75078342 75078342 C - C1orf173 Frame_Shift_Del p.F385Lfs*40 0.10 TCGA-D8-A27V-01 1 75097480 75097480 T - C1orf173 Frame_Shift_Del p.R246Efs*22 0.09 TCGA-D8-A27V-01 1 76257185 76257185 T - RABGGTB Frame_Shift_Del p.F170Lfs*6 0.09 TCGA-D8-A27V-01 1 77806069 77806069 C - AK5 Frame_Shift_Del p.D238Ifs*18 0.12 TCGA-D8-A27V-01 1 78560684 78560684 G - GIPC2 Frame_Shift_Del p.D160Ifs*6 0.13 TCGA-D8-A27V-01 1 79120830 79120830 T - IFI44 Frame_Shift_Del p.F210Sfs*5 0.08 TCGA-D8-A27V-01 1 79383682 79383682 A - ELTD1 Frame_Shift_Del p.F505Lfs*35 0.09 TCGA-D8-A27V-01 1 84394900 84394900 G - TTLL7 Frame_Shift_Del p.P354Qfs*9 0.08 TCGA-D8-A27V-01 1 84415645 84415645 C - TTLL7 Frame_Shift_Del p.G61Dfs*3 0.09 TCGA-D8-A27V-01 1 84864322 84864322 G - DNASE2B Frame_Shift_Del p.A27Qfs*35 0.09 TCGA-D8-A27V-01 1 85124015 85124015 T - SSX2IP Frame_Shift_Del p.K355Sfs*19 0.10 TCGA-D8-A27V-01 1 85412752 85412752 T - MCOLN2 Frame_Shift_Del p.I271Lfs*7 0.11 TCGA-D8-A27V-01 1 86173482 86173482 T - ZNHIT6 Frame_Shift_Del p.K162Nfs*11 0.08 TCGA-D8-A27V-01 1 87036817 87036817 G - CLCA4 Frame_Shift_Del p.E415Rfs*12 0.10 TCGA-D8-A27V-01 1 87036860 87036860 A - CLCA4 Frame_Shift_Del p.S429Vfs*18 0.08 TCGA-D8-A27V-01 1 89481025 89481025 T - GBP3 Frame_Shift_Del p.K88Sfs*6 0.11 TCGA-D8-A27V-01 1 89587462 89587462 T - GBP2 Frame_Shift_Del p.N63Tfs*5 0.11 TCGA-D8-A27V-01 1 92195379 92195379 G - TGFBR3 Frame_Shift_Del p.N241Tfs*12 0.14 TCGA-D8-A27V-01 1 93089760 93089760 T - EVI5 Frame_Shift_Del p.K584Nfs*4 0.08 TCGA-D8-A27V-01 1 93142738 93142738 T - EVI5 Frame_Shift_Del p.M423Wfs*17 0.09 TCGA-D8-A27V-01 1 94362251 94362251 G A GCLM Nonsense_Mutation p.Q155* 0.25 TCGA-D8-A27V-01 1 94512579 94512579 A - ABCA4 Frame_Shift_Del p.F938Lfs*12 0.11 TCGA-D8-A27V-01 1 95392473 95392473 G - CNN3 5'UTR 0.12 TCGA-D8-A27V-01 1 9809866 9809866 A - CLSTN1 Frame_Shift_Del p.L252Wfs*2 0.09 TCGA-D8-A27V-01 1 9990460 9990460 T - LZIC Frame_Shift_Del p.K190Nfs*16 0.11 TCGA-D8-A27V-01 20 10620168 10620168 T - JAG1 Frame_Shift_Del p.N1212Tfs*20 0.09 TCGA-D8-A27V-01 20 10620184 10620184 T - JAG1 Frame_Shift_Del p.S1207Vfs*5 0.08 TCGA-D8-A27V-01 20 13756668 13756668 T - ESF1 Frame_Shift_Del p.S296Vfs*14 0.08 TCGA-D8-A27V-01 20 14066298 14066298 G C MACROD2 Missense_Mutation p.K65N 0.25 tolerated(0.22) probably_damaging(0.997) TCGA-D8-A27V-01 20 1610888 1610888 G - SIRPG Frame_Shift_Del p.W383Gfs*34 0.10 TCGA-D8-A27V-01 20 1616927 1616927 C - SIRPG Frame_Shift_Del p.D219Tfs*43 0.08 TCGA-D8-A27V-01 20 16359744 16359744 T - KIF16B Frame_Shift_Del p.K968Sfs*19 0.08 TCGA-D8-A27V-01 20 16359791 16359791 T - KIF16B Frame_Shift_Del p.E953Kfs*34 0.09 TCGA-D8-A27V-01 20 18122897 18122897 A - PET117 Frame_Shift_Del p.E50Kfs*12 0.08 TCGA-D8-A27V-01 20 18370347 18370347 C - DZANK1 Frame_Shift_Del p.P673Rfs*46 0.09 TCGA-D8-A27V-01 20 1918099 1918099 C - SIRPA Frame_Shift_Del p.L468Sfs*45 0.09 TCGA-D8-A27V-01 20 19560694 19560694 C - SLC24A3 Frame_Shift_Del p.P134Lfs*36 0.09 TCGA-D8-A27V-01 20 19566084 19566084 G - SLC24A3 Splice_Site p.X171_splice 0.10 TCGA-D8-A27V-01 20 20055008 20055008 C - C20orf26 Frame_Shift_Del p.C119* 0.08 TCGA-D8-A27V-01 20 22562611 22562611 G - FOXA2 Frame_Shift_Del p.M424Cfs*37 0.08 TCGA-D8-A27V-01 20 25261722 25261722 C - PYGB Frame_Shift_Del p.H460Tfs*5 0.10 TCGA-D8-A27V-01 20 2591101 2591101 C - TMC2 Frame_Shift_Del p.P485Lfs*18 0.12 TCGA-D8-A27V-01 20 2593917 2593917 T - TMC2 Frame_Shift_Del p.F608Lfs*5 0.10 TCGA-D8-A27V-01 20 2688627 2688627 A - EBF4 Frame_Shift_Del p.M147Cfs*50 0.09 TCGA-D8-A27V-01 20 30028552 30028552 G - DEFB123 Frame_Shift_Del p.T18Lfs*30 0.08 TCGA-D8-A27V-01 20 30534309 30534309 A - PDRG1 Frame_Shift_Del p.F103Lfs*9 0.10 TCGA-D8-A27V-01 20 30584526 30584526 T - XKR7 Frame_Shift_Del p.W336Gfs*4 0.11 TCGA-D8-A27V-01 20 30681779 30681779 G - HCK Frame_Shift_Del p.A403Pfs*45 0.08 TCGA-D8-A27V-01 20 30697535 30697535 G - TM9SF4 5'UTR 0.09 TCGA-D8-A27V-01 20 31041412 31041412 T - C20orf112 Frame_Shift_Del p.G181Afs*68 0.08 TCGA-D8-A27V-01 20 31381395 31381395 A - DNMT3B Frame_Shift_Del p.K374Nfs*216 0.10 TCGA-D8-A27V-01 20 3146948 3146948 T - LZTS3 Frame_Shift_Del p.H173Pfs*34 0.22 TCGA-D8-A27V-01 20 31481037 31481037 C T EFCAB8 Silent p.V272V 0.20 TCGA-D8-A27V-01 20 31611147 31611147 G - BPIFB2 Splice_Site p.X446_splice 0.12 TCGA-D8-A27V-01 20 31660569 31660569 T - BPIFB3 Frame_Shift_Del p.S459Pfs*8 0.09 TCGA-D8-A27V-01 20 31688301 31688301 T - BPIFB4 Splice_Site p.X546_splice 0.10 TCGA-D8-A27V-01 20 3235898 3235898 C - C20orf194 Frame_Shift_Del p.M1099Cfs*2 0.08 TCGA-D8-A27V-01 20 33600844 33600844 A - TRPC4AP Frame_Shift_Del p.L459* 0.09 TCGA-D8-A27V-01 20 33703355 33703355 G - EDEM2 Frame_Shift_Del p.H540Mfs*36 0.11 TCGA-D8-A27V-01 20 33839806 33839806 A - MMP24 Frame_Shift_Del p.K166Nfs*17 0.08 TCGA-D8-A27V-01 20 34025491 34025491 T - GDF5 Frame_Shift_Del p.N73Mfs*14 0.12 TCGA-D8-A27V-01 20 34319965 34319965 T - RBM39 Frame_Shift_Del p.K65Rfs*56 0.09 TCGA-D8-A27V-01 20 35635942 35635942 T - RBL1 Frame_Shift_Del p.T915Hfs*9 0.12 TCGA-D8-A27V-01 20 36640868 36640868 A - TTI1 Frame_Shift_Del p.W451Gfs*6 0.08 TCGA-D8-A27V-01 20 37209905 37209905 T - ADIG Frame_Shift_Del p.L5* 0.09 TCGA-D8-A27V-01 20 3735117 3735117 T - C20orf27 Frame_Shift_Del p.E143Rfs*5 0.14 TCGA-D8-A27V-01 20 37580336 37580336 T - FAM83D Frame_Shift_Del p.F341Lfs*92 0.10 TCGA-D8-A27V-01 20 39990857 39990857 C - EMILIN3 Frame_Shift_Del p.G451Dfs*4 0.08 TCGA-D8-A27V-01 20 39993724 39993724 C - EMILIN3 Frame_Shift_Del p.A81Lfs*33 0.10 TCGA-D8-A27V-01 20 40033643 40033643 T - CHD6 Frame_Shift_Del p.T2580Qfs*4 0.08 TCGA-D8-A27V-01 20 42697344 42697344 C - TOX2 3'UTR 0.09 TCGA-D8-A27V-01 20 44279161 44279161 T - WFDC11 Frame_Shift_Del p.M27* 0.09 TCGA-D8-A27V-01 20 44669093 44669093 G - SLC12A5 Frame_Shift_Del p.V255Ffs*82 0.08 TCGA-D8-A27V-01 20 45858519 45858519 T - ZMYND8 Frame_Shift_Del p.I918Yfs*14 0.09 TCGA-D8-A27V-01 20 46276026 46276026 C - NCOA3 Frame_Shift_Del p.P1155Hfs*6 0.10 TCGA-D8-A27V-01 20 46287079 46287079 T - SULF2 3'UTR 0.09 TCGA-D8-A27V-01 20 46313262 46313262 G - SULF2 Frame_Shift_Del p.M268* 0.08 TCGA-D8-A27V-01 20 47768206 47768206 T - STAU1 Frame_Shift_Del p.G142Efs*16 0.08 TCGA-D8-A27V-01 20 47865558 47865558 G - ZNFX1 Frame_Shift_Del p.V1336Ffs*11 0.14 TCGA-D8-A27V-01 20 4843515 4843515 G A SLC23A2 Silent p.L465L 0.38 TCGA-D8-A27V-01 20 48481271 48481271 T - SLC9A8 Intron 0.09 TCGA-D8-A27V-01 20 48744621 48744621 C - TMEM189-UBE2V1 Frame_Shift_Del p.L195Cfs*38 0.10 TCGA-D8-A27V-01 20 50092010 50092010 T - NFATC2 Frame_Shift_Del p.N507Tfs*3 0.10 TCGA-D8-A27V-01 20 50407472 50407472 C - SALL4 Frame_Shift_Del p.G517Vfs*33 0.11 TCGA-D8-A27V-01 20 50803465 50803465 G - ZFP64 Frame_Shift_Del p.S65Afs*95 0.12 TCGA-D8-A27V-01 20 52570033 52570033 C - BCAS1 Frame_Shift_Del p.D540Tfs*117 0.10 TCGA-D8-A27V-01 20 52788168 52788168 T - CYP24A1 Frame_Shift_Del p.K164Rfs*3 0.08 TCGA-D8-A27V-01 20 56098132 56098132 T - CTCFL Frame_Shift_Del p.K249Rfs*28 0.08 TCGA-D8-A27V-01 20 5922671 5922671 T - TRMT6 Frame_Shift_Del p.K346Nfs*13 0.09 TCGA-D8-A27V-01 20 5943950 5943950 T - MCM8 Frame_Shift_Del p.F274Lfs*23 0.09 TCGA-D8-A27V-01 20 60574111 60574111 A - TAF4 Frame_Shift_Del p.F947Lfs*20 0.12 TCGA-D8-A27V-01 20 60967511 60967511 T - CABLES2 Frame_Shift_Del p.K342Rfs*3 0.10 TCGA-D8-A27V-01 20 61291821 61291821 G - SLCO4A1 Frame_Shift_Del p.G316Afs*29 0.11 TCGA-D8-A27V-01 20 61488932 61488932 G - TCFL5 Frame_Shift_Del p.D351Efs*4 0.12 TCGA-D8-A27V-01 20 61982004 61982004 G - CHRNA4 Frame_Shift_Del p.C254Afs*61 0.08 TCGA-D8-A27V-01 20 62192010 62192010 T - HELZ2 Frame_Shift_Del p.K2441Rfs*4 0.09 TCGA-D8-A27V-01 20 62597614 62597614 G - ZNF512B Frame_Shift_Del p.P305Rfs*2 0.10 TCGA-D8-A27V-01 20 62597757 62597757 G - ZNF512B Frame_Shift_Del p.I258Sfs*21 0.11 TCGA-D8-A27V-01 20 62648146 62648146 T - PRPF6 Frame_Shift_Del p.I532Mfs*20 0.10 TCGA-D8-A27V-01 20 62729682 62729682 T - OPRL1 Frame_Shift_Del p.F215Lfs*24 0.14 TCGA-D8-A27V-01 20 8678272 8678272 G - PLCB1 Splice_Site p.X337_splice 0.09 TCGA-D8-A27V-01 20 9495523 9495523 C - LAMP5 Frame_Shift_Del p.S10Afs*9 0.09 TCGA-D8-A27V-01 21 15753618 15753618 T - HSPA13 Frame_Shift_Del p.N91Ifs*13 0.08 TCGA-D8-A27V-01 21 18933124 18933124 C - CXADR Frame_Shift_Del p.R226Vfs*2 0.08 TCGA-D8-A27V-01 21 22656691 22656691 A - NCAM2 Frame_Shift_Del p.E104Kfs*4 0.10 TCGA-D8-A27V-01 21 27394221 27394221 T - APP Frame_Shift_Del p.E267Gfs*37 0.09 TCGA-D8-A27V-01 21 27394232 27394232 T - APP Frame_Shift_Del p.E264Kfs*40 0.10 TCGA-D8-A27V-01 21 30343636 30343636 G - LTN1 Frame_Shift_Del p.P360Qfs*21 0.14 TCGA-D8-A27V-01 21 31813069 31813069 G - KRTAP15-1 3'UTR 0.10 TCGA-D8-A27V-01 21 31986136 31986136 G - KRTAP6-1 Frame_Shift_Del p.L30Wfs*60 0.08 TCGA-D8-A27V-01 21 32595787 32595787 T - TIAM1 Frame_Shift_Del p.S644Vfs*32 0.15 TCGA-D8-A27V-01 21 32598144 32598144 T - TIAM1 Frame_Shift_Del p.K569Nfs*12 0.09 TCGA-D8-A27V-01 21 33039637 33039637 T - SOD1 Frame_Shift_Del p.S103Lfs*2 0.08 TCGA-D8-A27V-01 21 33734227 33734227 G - URB1 Frame_Shift_Del p.P538Rfs*17 0.11 TCGA-D8-A27V-01 21 33974563 33974563 C - C21orf59 Intron 0.09 TCGA-D8-A27V-01 21 34004081 34004081 T - SYNJ1 Frame_Shift_Del p.R1355Efs*5 0.12 TCGA-D8-A27V-01 21 34787323 34787323 A - IFNGR2 Frame_Shift_Del p.K68Nfs*15 0.10 TCGA-D8-A27V-01 21 34932328 34932328 C - SON Intron 0.14 TCGA-D8-A27V-01 21 35260590 35260590 T - ITSN1 Frame_Shift_Del p.F1718Lfs*31 0.11 TCGA-D8-A27V-01 21 36206744 36206744 G - RUNX1 Frame_Shift_Del p.T257Lfs*54 0.14 TCGA-D8-A27V-01 21 36231787 36231787 C - RUNX1 Frame_Shift_Del p.R201Efs*10 0.09 TCGA-D8-A27V-01 21 37410492 37410492 T - SETD4 Frame_Shift_Del p.I382Yfs*6 0.10 TCGA-D8-A27V-01 21 37510172 37510172 A - CBR3 Frame_Shift_Del p.N114Ifs*15 0.08 TCGA-D8-A27V-01 21 37583923 37583923 T - DOPEY2 Frame_Shift_Del p.F253Sfs*34 0.08 TCGA-D8-A27V-01 21 37661403 37661403 G - DOPEY2 Frame_Shift_Del p.E2140Rfs*53 0.10 TCGA-D8-A27V-01 21 38538651 38538651 A - TTC3 Frame_Shift_Del p.N1380Mfs*11 0.10 TCGA-D8-A27V-01 21 39671692 39671692 G C KCNJ15 Missense_Mutation p.R170T 0.32 tolerated(0.06) probably_damaging(0.998) TCGA-D8-A27V-01 21 39671802 39671802 T - KCNJ15 Frame_Shift_Del p.L207* 0.08 TCGA-D8-A27V-01 21 39671845 39671845 T - KCNJ15 Frame_Shift_Del p.V221Afs*32 0.09 TCGA-D8-A27V-01 21 39755768 39755768 C - ERG Frame_Shift_Del p.E340Kfs*9 0.15 TCGA-D8-A27V-01 21 40558919 40558919 T - BRWD1 3'UTR 0.13 TCGA-D8-A27V-01 21 41447036 41447036 C - DSCAM Frame_Shift_Del p.V1606Sfs*20 0.08 TCGA-D8-A27V-01 21 43767677 43767677 G - TFF2 Frame_Shift_Del p.E99Rfs*77 0.11 TCGA-D8-A27V-01 21 43963561 43963561 G - SLC37A1 Frame_Shift_Del p.V195Sfs*15 0.14 TCGA-D8-A27V-01 21 43963638 43963638 G - SLC37A1 Frame_Shift_Del p.G220Afs*16 0.10 TCGA-D8-A27V-01 21 45971330 45971330 G - KRTAP10-2 Frame_Shift_Del p.T5Pfs*39 0.09 TCGA-D8-A27V-01 21 46047291 46047291 A - KRTAP10-9 Frame_Shift_Del p.Q68Hfs*313 0.19 TCGA-D8-A27V-01 21 46689905 46689905 G - POFUT2 Frame_Shift_Del p.Y288Tfs*6 0.10 TCGA-D8-A27V-01 21 46888604 46888604 A - COL18A1 Frame_Shift_Del p.M366Cfs*34 0.09 TCGA-D8-A27V-01 21 47330941 47330941 G - PCBP3 Frame_Shift_Del p.E200Sfs*42 0.11 TCGA-D8-A27V-01 21 47412282 47412282 C - COL6A1 Frame_Shift_Del p.P415Qfs*90 0.11 TCGA-D8-A27V-01 21 47697607 47697607 A - MCM3AP Frame_Shift_Del p.L565* 0.13 TCGA-D8-A27V-01 21 48068499 48068499 C G PRMT2 Missense_Mutation p.L153V 0.24 deleterious(0.03) probably_damaging(0.988) TCGA-D8-A27V-01 22 19506418 19506418 C - CDC45 Frame_Shift_Del p.L596Sfs*11 0.09 TCGA-D8-A27V-01 22 20920967 20920967 C - MED15 Frame_Shift_Del p.P302Hfs*44 0.12 TCGA-D8-A27V-01 22 20921099 20921099 A - MED15 Frame_Shift_Del p.K346Nfs*40 0.09 TCGA-D8-A27V-01 22 21328871 21328871 G - AIFM3 Frame_Shift_Del p.Y191Tfs*37 0.11 TCGA-D8-A27V-01 22 24086386 24086386 C - ZNF70 Frame_Shift_Del p.K315Rfs*65 0.12 TCGA-D8-A27V-01 22 24122794 24122794 T - MMP11 Frame_Shift_Del p.F170Lfs*63 0.20 TCGA-D8-A27V-01 22 26070490 26070490 A - ADRBK2 Frame_Shift_Del p.M216Cfs*4 0.08 TCGA-D8-A27V-01 22 26400707 26400707 C - MYO18B Frame_Shift_Del p.Q2120Sfs*10 0.08 TCGA-D8-A27V-01 22 26906076 26906076 C - TFIP11 Frame_Shift_Del p.A55Qfs*65 0.09 TCGA-D8-A27V-01 22 28388940 28388940 G - TTC28 Intron 0.14 TCGA-D8-A27V-01 22 28426269 28426269 C - TTC28 Frame_Shift_Del p.V1340Sfs*24 0.10 TCGA-D8-A27V-01 22 29610938 29610938 C - EMID1 Frame_Shift_Del p.R43Afs*24 0.09 TCGA-D8-A27V-01 22 29763218 29763218 T - AP1B1 Frame_Shift_Del p.K5Nfs*14 0.08 TCGA-D8-A27V-01 22 29908046 29908046 T - THOC5 Frame_Shift_Del p.E589Rfs*34 0.09 TCGA-D8-A27V-01 22 30736183 30736183 A - SF3A1 Splice_Site p.X459_splice 0.09 TCGA-D8-A27V-01 22 30737797 30737797 C - SF3A1 Frame_Shift_Del p.E319Rfs*148 0.11 TCGA-D8-A27V-01 22 30766446 30766446 C - CCDC157 Frame_Shift_Del p.Q185Kfs*67 0.13 TCGA-D8-A27V-01 22 30975176 30975176 T - PES1 Frame_Shift_Del p.K490Rfs*22 0.10 TCGA-D8-A27V-01 22 31286900 31286900 G - OSBP2 Frame_Shift_Del p.E605Rfs*20 0.21 TCGA-D8-A27V-01 22 32110875 32110875 T - PRR14L Frame_Shift_Del p.S984Vfs*10 0.09 TCGA-D8-A27V-01 22 36206004 36206004 A - RBFOX2 Frame_Shift_Del p.F95Lfs*35 0.08 TCGA-D8-A27V-01 22 36702475 36702475 G - MYH9 Frame_Shift_Del p.N675Tfs*50 0.11 TCGA-D8-A27V-01 22 36716407 36716407 G - MYH9 Frame_Shift_Del p.D291Ifs*36 0.08 TCGA-D8-A27V-01 22 36907717 36907717 C - EIF3D Frame_Shift_Del p.G489Afs*11 0.09 TCGA-D8-A27V-01 22 36915451 36915451 C - EIF3D Splice_Site p.X237_splice 0.08 TCGA-D8-A27V-01 22 37770299 37770299 C - ELFN2 Frame_Shift_Del p.E426Rfs*51 0.10 TCGA-D8-A27V-01 22 37903866 37903866 T - CARD10 Frame_Shift_Del p.Q387Hfs*48 0.08 TCGA-D8-A27V-01 22 38824037 38824037 T - KCNJ4 Frame_Shift_Del p.N34Tfs*2 0.10 TCGA-D8-A27V-01 22 38875754 38875754 G C KDELR3 Missense_Mutation p.E117Q 0.21 tolerated(0.06) possibly_damaging(0.523) TCGA-D8-A27V-01 22 38884101 38884101 A - DDX17 Frame_Shift_Del p.F489Lfs*2 0.08 TCGA-D8-A27V-01 22 38962697 38962697 G - DMC1 Frame_Shift_Del p.I48Sfs*6 0.09 TCGA-D8-A27V-01 22 39358291 39388227 22:39358291-39388227 - APOBEC3B large deletion 0.12 TCGA-D8-A27V-01 22 39378415 39378415 A - APOBEC3B 5'UTR 0.18 TCGA-D8-A27V-01 22 40030580 40030580 C - CACNA1I Frame_Shift_Del p.L198Wfs*2 0.13 TCGA-D8-A27V-01 22 40064333 40064333 G - CACNA1I Frame_Shift_Del p.G1381Vfs*3 0.09 TCGA-D8-A27V-01 22 40068273 40068273 A - CACNA1I Frame_Shift_Del p.K1537Sfs*7 0.12 TCGA-D8-A27V-01 22 40574076 40574076 T - TNRC6B 5'UTR 0.08 TCGA-D8-A27V-01 22 40696576 40696576 C - TNRC6B Frame_Shift_Del p.Q1277Sfs*41 0.08 TCGA-D8-A27V-01 22 40711510 40711510 G - TNRC6B Frame_Shift_Del 0.19 TCGA-D8-A27V-01 22 41240850 41240850 T - ST13 Frame_Shift_Del p.N103Mfs*4 0.08 TCGA-D8-A27V-01 22 41676987 41676987 C - RANGAP1 Frame_Shift_Del p.G21Dfs*3 0.10 TCGA-D8-A27V-01 22 41916267 41916267 G - ACO2 Frame_Shift_Del p.D376Tfs*6 0.09 TCGA-D8-A27V-01 22 41923997 41923997 C G ACO2 Missense_Mutation p.Q727E 0.24 tolerated_low_confidence(0.22) benign(0.001) TCGA-D8-A27V-01 22 42086626 42086626 T - C22orf46 5'UTR 0.09 TCGA-D8-A27V-01 22 42383750 42383750 C - SEPT3 Frame_Shift_Del p.T181Qfs*13 0.09 TCGA-D8-A27V-01 22 42807521 42807521 G - NFAM1 Frame_Shift_Del p.Q115Rfs*26 0.08 TCGA-D8-A27V-01 22 43019800 43019800 G - CYB5R3 Frame_Shift_Del p.P276Lfs*11 0.09 TCGA-D8-A27V-01 22 43471501 43471501 T - TTLL1 Frame_Shift_Del p.N31Tfs*9 0.10 TCGA-D8-A27V-01 22 44235893 44235893 G A SULT4A1 Missense_Mutation p.P105S 0.28 tolerated(0.07) probably_damaging(0.949) TCGA-D8-A27V-01 22 44285402 44285402 G - PNPLA5 Frame_Shift_Del p.A170Vfs*2 0.09 TCGA-D8-A27V-01 22 44322964 44322964 A - PNPLA3 Frame_Shift_Del p.I114* 0.12 TCGA-D8-A27V-01 22 44328905 44328905 C G PNPLA3 Missense_Mutation p.L212V 0.25 tolerated(0.14) benign(0.073) TCGA-D8-A27V-01 22 44377272 44377272 T - SAMM50 Frame_Shift_Del p.S315Qfs*48 0.09 TCGA-D8-A27V-01 22 50485609 50485609 G - TTLL8 Frame_Shift_Del p.F164Sfs*9 0.08 TCGA-D8-A27V-01 22 50885976 50885976 A - SBF1 Frame_Shift_Del p.F1809Sfs*54 0.17 TCGA-D8-A27V-01 22 51178286 51178286 C - ACR Frame_Shift_Del p.P150Lfs*36 0.11 TCGA-D8-A27V-01 22 51207235 51207235 G - RABL2B Frame_Shift_Del p.P229Hfs*65 0.11 TCGA-D8-A27V-01 2 100055692 100055692 T - REV1 Frame_Shift_Del p.N195Ifs*42 0.08 TCGA-D8-A27V-01 2 101592029 101592029 G - NPAS2 Frame_Shift_Del 0.10 TCGA-D8-A27V-01 2 101622805 101622805 T - RPL31 Intron 0.09 TCGA-D8-A27V-01 2 101648788 101648788 C - TBC1D8 Frame_Shift_Del p.W611Cfs*19 0.08 TCGA-D8-A27V-01 2 102504258 102504258 C - MAP4K4 Frame_Shift_Del p.H1120Mfs*25 0.09 TCGA-D8-A27V-01 2 102632422 102632422 T - IL1R2 Frame_Shift_Del p.L142* 0.09 TCGA-D8-A27V-01 2 103124610 103124610 T - SLC9A4 Frame_Shift_Del p.F425Sfs*33 0.09 TCGA-D8-A27V-01 2 103130693 103130693 T - SLC9A4 Frame_Shift_Del p.F569Sfs*24 0.15 TCGA-D8-A27V-01 2 103299890 103299890 C - SLC9A2 Frame_Shift_Del p.F393Sfs*20 0.08 TCGA-D8-A27V-01 2 103299936 103299936 G - SLC9A2 Frame_Shift_Del 0.08 TCGA-D8-A27V-01 2 105984099 105984099 G - FHL2 Frame_Shift_Del p.D145Tfs*66 0.09 TCGA-D8-A27V-01 2 105990048 105990048 T - FHL2 Frame_Shift_Del p.K100Sfs*111 0.09 TCGA-D8-A27V-01 2 105990110 105990110 G - FHL2 Frame_Shift_Del p.F80Lfs*131 0.09 TCGA-D8-A27V-01 2 106713224 106713224 T - UXS1 Frame_Shift_Del p.R366Efs*10 0.12 TCGA-D8-A27V-01 2 106715189 106715189 A - UXS1 Frame_Shift_Del p.L342* 0.14 TCGA-D8-A27V-01 2 109370347 109370347 A - RANBP2 Frame_Shift_Del p.N709Ifs*3 0.09 TCGA-D8-A27V-01 2 110310740 110310740 T - SEPT10 Frame_Shift_Del p.K362Rfs*5 0.08 TCGA-D8-A27V-01 2 111551690 111551690 G - ACOXL Frame_Shift_Del p.G96Afs*23 0.13 TCGA-D8-A27V-01 2 112526879 112526879 T - ANAPC1 Frame_Shift_Del p.M1942Wfs*2 0.08 TCGA-D8-A27V-01 2 112588876 112588876 C T ANAPC1 Missense_Mutation p.R871K 0.36 tolerated(0.88) benign(0.004) TCGA-D8-A27V-01 2 113007768 113007768 T - ZC3H8 Frame_Shift_Del p.K52Nfs*67 0.09 TCGA-D8-A27V-01 2 113089859 113089859 G A ZC3H6 Missense_Mutation p.G1122S 0.32 tolerated(0.7) benign(0.014) TCGA-D8-A27V-01 2 113157342 113157342 G C RGPD8 Nonsense_Mutation p.S641* 0.24 TCGA-D8-A27V-01 2 11338705 11338705 G C ROCK2 Nonsense_Mutation p.S1004* 0.27 TCGA-D8-A27V-01 2 11342196 11342196 T - ROCK2 Frame_Shift_Del p.A868Qfs*52 0.09 TCGA-D8-A27V-01 2 113513706 113513706 T - CKAP2L Frame_Shift_Del p.A415Hfs*8 0.09 TCGA-D8-A27V-01 2 11355490 11355490 T - ROCK2 Frame_Shift_Del p.N549Tfs*9 0.09 TCGA-D8-A27V-01 2 116447264 116447264 T - DPP10 Frame_Shift_Del p.H154Ifs*9 0.08 TCGA-D8-A27V-01 2 11738053 11738053 C - GREB1 Frame_Shift_Del p.S703Qfs*3 0.09 TCGA-D8-A27V-01 2 11959695 11959695 T - LPIN1 Frame_Shift_Del p.Y880Mfs*17 0.08 TCGA-D8-A27V-01 2 122135088 122135088 T - CLASP1 Frame_Shift_Del p.K1210Rfs*25 0.09 TCGA-D8-A27V-01 2 128046254 128046254 C - ERCC3 Frame_Shift_Del p.V337Sfs*15 0.10 TCGA-D8-A27V-01 2 130911319 130911319 C T SMPD4 Missense_Mutation p.E656K 0.23 tolerated(0.08) benign(0.004) TCGA-D8-A27V-01 2 130912742 130912742 G - SMPD4 Frame_Shift_Del p.K500Sfs*21 0.09 TCGA-D8-A27V-01 2 130949427 130949427 C - TUBA3E Frame_Shift_Del p.A444Lfs*20 0.14 TCGA-D8-A27V-01 2 131102251 131102251 G - IMP4 Frame_Shift_Del p.S56Pfs*12 0.09 TCGA-D8-A27V-01 2 131356286 131356286 C - CFC1 Frame_Shift_Del p.G59Efs*3 0.09 TCGA-D8-A27V-01 2 133486416 133486416 C - NCKAP5 Frame_Shift_Del p.S1852Vfs*44 0.11 TCGA-D8-A27V-01 2 135985510 135985510 T - ZRANB3 Frame_Shift_Del p.K677Rfs*58 0.08 TCGA-D8-A27V-01 2 136409321 136409321 T - R3HDM1 Frame_Shift_Del p.F548Lfs*4 0.10 TCGA-D8-A27V-01 2 136566611 136566611 G - LCT Frame_Shift_Del p.R1103Efs*20 0.15 TCGA-D8-A27V-01 2 136594239 136594239 C - LCT Frame_Shift_Del p.I168Sfs*11 0.14 TCGA-D8-A27V-01 2 136718990 136718990 T - DARS Frame_Shift_Del p.K99Sfs*18 0.10 TCGA-D8-A27V-01 2 136872567 136872567 T - CXCR4 Frame_Shift_Del p.T315Pfs*10 0.10 TCGA-D8-A27V-01 2 138375986 138375986 A - THSD7B Frame_Shift_Del p.N1201Tfs*13 0.09 TCGA-D8-A27V-01 2 138425354 138425354 A - THSD7B Frame_Shift_Del p.I1559Ffs*14 0.08 TCGA-D8-A27V-01 2 141115624 141115624 T - LRP1B Frame_Shift_Del p.K3773Nfs*26 0.11 TCGA-D8-A27V-01 2 141643815 141643815 C T LRP1B Missense_Mutation p.G1286R 0.28 probably_damaging(0.953) TCGA-D8-A27V-01 2 145157512 145157512 G - ZEB2 Frame_Shift_Del p.F415Lfs*2 0.21 TCGA-D8-A27V-01 2 145182362 145182362 C - ZEB2 Splice_Site p.X135_splice 0.09 TCGA-D8-A27V-01 2 149240830 149240830 T - MBD5 Frame_Shift_Del p.F891Lfs*24 0.08 TCGA-D8-A27V-01 2 149838032 149838032 C - KIF5C Frame_Shift_Del p.R510Gfs*6 0.11 TCGA-D8-A27V-01 2 151331469 151331469 G - RND3 Frame_Shift_Del p.L90Sfs*10 0.12 TCGA-D8-A27V-01 2 152127332 152127332 T - NMI Frame_Shift_Del p.M267Wfs*9 0.09 TCGA-D8-A27V-01 2 152408299 152408299 T - NEB Frame_Shift_Del p.T6633Pfs*48 0.08 TCGA-D8-A27V-01 2 152417159 152417159 A - NEB Frame_Shift_Del p.S6421Pfs*6 0.08 TCGA-D8-A27V-01 2 152512848 152512848 T - NEB Frame_Shift_Del p.N2105Tfs*36 0.10 TCGA-D8-A27V-01 2 152551103 152551103 T - NEB Frame_Shift_Del p.K572Sfs*24 0.12 TCGA-D8-A27V-01 2 152553210 152553210 G - NEB Frame_Shift_Del p.Q504Kfs*18 0.09 TCGA-D8-A27V-01 2 152566191 152566191 T - NEB Frame_Shift_Del p.A339Lfs*8 0.09 TCGA-D8-A27V-01 2 153519660 153519660 T - PRPF40A Frame_Shift_Del p.E705Dfs*12 0.09 TCGA-D8-A27V-01 2 153533258 153533258 G - PRPF40A Frame_Shift_Del p.P231Qfs*11 0.09 TCGA-D8-A27V-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.09 TCGA-D8-A27V-01 2 160628476 160628476 T - LY75 Frame_Shift_Del p.K1836Nfs*26 0.09 TCGA-D8-A27V-01 2 161169715 161169715 T - RBMS1 Frame_Shift_Del p.A119Lfs*5 0.09 TCGA-D8-A27V-01 2 162696376 162696376 A - SLC4A10 Frame_Shift_Del p.T119Qfs*23 0.10 TCGA-D8-A27V-01 2 166245374 166245374 G C SCN2A Missense_Mutation p.K1686N 0.28 deleterious(0.02) possibly_damaging(0.784) TCGA-D8-A27V-01 2 166788299 166788299 A - TTC21B Frame_Shift_Del p.F288Sfs*32 0.12 TCGA-D8-A27V-01 2 167129074 167129074 A - SCN9A Frame_Shift_Del p.F1051Lfs*9 0.10 TCGA-D8-A27V-01 2 167266793 167266793 T - SCN7A Frame_Shift_Del p.K1216Nfs*6 0.11 TCGA-D8-A27V-01 2 167313382 167313382 C A SCN7A Nonsense_Mutation p.E430* 0.22 TCGA-D8-A27V-01 2 168103382 168103382 C - XIRP2 Frame_Shift_Del p.T1827Nfs*11 0.12 TCGA-D8-A27V-01 2 169764246 169764246 G - G6PC2 Frame_Shift_Del p.W242Cfs*19 0.09 TCGA-D8-A27V-01 2 169780221 169780221 C - ABCB11 Frame_Shift_Del p.V1293Wfs*2 0.09 TCGA-D8-A27V-01 2 170025132 170025132 T - LRP2 Frame_Shift_Del p.N3851Tfs*132 0.16 TCGA-D8-A27V-01 2 171822335 171822335 T - GORASP2 Frame_Shift_Del p.L352Yfs*63 0.10 TCGA-D8-A27V-01 2 171862737 171862737 A - TLK1 Frame_Shift_Del p.F608Lfs*14 0.10 TCGA-D8-A27V-01 2 172944914 172944914 G - METAP1D Frame_Shift_Del p.V304Sfs*3 0.08 TCGA-D8-A27V-01 2 173333872 173333872 A - ITGA6 Frame_Shift_Del p.R138Gfs*20 0.10 TCGA-D8-A27V-01 2 175318477 175318477 A - GPR155 Frame_Shift_Del p.S622Rfs*9 0.08 TCGA-D8-A27V-01 2 176804325 176804325 A - KIAA1715 Frame_Shift_Del p.L256Wfs*32 0.08 TCGA-D8-A27V-01 2 178095723 178095723 T - NFE2L2 Frame_Shift_Del p.E537Kfs*17 0.09 TCGA-D8-A27V-01 2 178416187 178416187 C - TTC30B Frame_Shift_Del p.W435* 0.10 TCGA-D8-A27V-01 2 178762844 178762844 G - PDE11A Frame_Shift_Del p.Q415Kfs*4 0.08 TCGA-D8-A27V-01 2 179325820 179325820 C - DFNB59 Frame_Shift_Del p.H294Ifs*43 0.09 TCGA-D8-A27V-01 2 179434125 179434125 T - TTN Frame_Shift_Del p.K25578Nfs*6 0.11 TCGA-D8-A27V-01 2 179516415 179516415 T - TTN Frame_Shift_Del p.K13147Nfs*7 0.09 TCGA-D8-A27V-01 2 179544327 179544327 T - TTN Frame_Shift_Del p.V11222Cfs*122 0.11 TCGA-D8-A27V-01 2 179547959 179547959 T - TTN Frame_Shift_Del p.R10956Efs*9 0.08 TCGA-D8-A27V-01 2 179567268 179567268 C T TTN Missense_Mutation p.E10116K 0.25 TCGA-D8-A27V-01 2 179574358 179574358 A - TTN Frame_Shift_Del p.L9563Cfs*37 0.10 TCGA-D8-A27V-01 2 182767111 182767111 A - SSFA2 Frame_Shift_Del p.E446Sfs*6 0.11 TCGA-D8-A27V-01 2 183608377 183608377 T - DNAJC10 Frame_Shift_Del p.Q417Sfs*4 0.09 TCGA-D8-A27V-01 2 187465088 187465088 C - ITGAV Intron 0.09 TCGA-D8-A27V-01 2 18768810 18768810 T - NT5C1B Frame_Shift_Del p.R27Efs*11 0.09 TCGA-D8-A27V-01 2 189875514 189875514 A - COL3A1 Frame_Shift_Del p.N1385Mfs*2 0.11 TCGA-D8-A27V-01 2 191155166 191155166 A - HIBCH Frame_Shift_Del p.F117Sfs*8 0.09 TCGA-D8-A27V-01 2 191537870 191537870 A - NAB1 Frame_Shift_Del p.V334Wfs*37 0.09 TCGA-D8-A27V-01 2 191864367 191864367 T - STAT1 Frame_Shift_Del p.T176Pfs*29 0.10 TCGA-D8-A27V-01 2 197538986 197538986 A - CCDC150 Frame_Shift_Del p.K352Sfs*5 0.08 TCGA-D8-A27V-01 2 198270073 198270073 T - SF3B1 Frame_Shift_Del p.S455Vfs*13 0.18 TCGA-D8-A27V-01 2 198353781 198353781 T - HSPD1 Frame_Shift_Del p.K387Rfs*4 0.10 TCGA-D8-A27V-01 2 198646554 198646554 A - BOLL Frame_Shift_Del p.P20Hfs*11 0.10 TCGA-D8-A27V-01 2 201371684 201371684 C - KCTD18 Frame_Shift_Del p.G19Vfs*30 0.10 TCGA-D8-A27V-01 2 202400955 202400955 T - ALS2CR11 Frame_Shift_Del p.N432Mfs*23 0.09 TCGA-D8-A27V-01 2 203147130 203147130 A - NOP58 Frame_Shift_Del p.I79* 0.11 TCGA-D8-A27V-01 2 203949255 203949255 G - NBEAL1 Frame_Shift_Del p.C354Sfs*30 0.09 TCGA-D8-A27V-01 2 20402587 20402587 C T SDC1 Silent p.P291P 0.30 TCGA-D8-A27V-01 2 204341846 204341846 C - RAPH1 Intron 0.12 TCGA-D8-A27V-01 2 204355967 204355967 A - RAPH1 Frame_Shift_Del p.S66Lfs*9 0.08 TCGA-D8-A27V-01 2 204737517 204737517 T - CTLA4 Frame_Shift_Del p.F219Lfs*10 0.09 TCGA-D8-A27V-01 2 207527860 207527860 C - DYTN Frame_Shift_Del p.S467Tfs*21 0.10 TCGA-D8-A27V-01 2 209207345 209207345 C - PIKFYVE Frame_Shift_Del p.S1668Afs*17 0.09 TCGA-D8-A27V-01 2 20939912 20939912 G - C2orf43 Frame_Shift_Del p.N175Mfs*24 0.12 TCGA-D8-A27V-01 2 211168332 211168332 C - MYL1 Intron 0.10 TCGA-D8-A27V-01 2 215866312 215866312 T - ABCA12 Frame_Shift_Del p.R945Gfs*37 0.08 TCGA-D8-A27V-01 2 215884317 215884317 T - ABCA12 Frame_Shift_Del p.V498* 0.10 TCGA-D8-A27V-01 2 217279591 217279591 A - SMARCAL1 Frame_Shift_Del p.N56Ifs*10 0.12 TCGA-D8-A27V-01 2 217543637 217543637 C - IGFBP5 Frame_Shift_Del p.G168Efs*16 0.07 TCGA-D8-A27V-01 2 218700892 218700892 G - TNS1 Frame_Shift_Del p.P892Lfs*94 0.14 TCGA-D8-A27V-01 2 219129279 219129279 A - AAMP Frame_Shift_Del p.C428Vfs*19 0.12 TCGA-D8-A27V-01 2 219255968 219255968 C - SLC11A1 Frame_Shift_Del p.M336* 0.12 TCGA-D8-A27V-01 2 219566636 219566636 G - STK36 Frame_Shift_Del p.N1286Ifs*24 0.09 TCGA-D8-A27V-01 2 219617541 219617541 T - TTLL4 Frame_Shift_Del p.E1012Rfs*53 0.10 TCGA-D8-A27V-01 2 220033039 220033039 C - SLC23A3 Frame_Shift_Del p.V234Lfs*43 0.14 TCGA-D8-A27V-01 2 220116396 220116396 G - TUBA4A Frame_Shift_Del p.P89Qfs*65 0.12 TCGA-D8-A27V-01 2 220161749 220161749 C - PTPRN Frame_Shift_Del p.E732Rfs*20 0.08 TCGA-D8-A27V-01 2 220430081 220430081 C - OBSL1 Frame_Shift_Del p.V764* 0.08 TCGA-D8-A27V-01 2 220473841 220473841 C - STK11IP Frame_Shift_Del p.I624Sfs*36 0.09 TCGA-D8-A27V-01 2 223085025 223085025 G - PAX3 Frame_Shift_Del p.P336Qfs*45 0.09 TCGA-D8-A27V-01 2 223553130 223553130 T - MOGAT1 Frame_Shift_Del p.L55* 0.08 TCGA-D8-A27V-01 2 224463177 224463177 T - SCG2 Frame_Shift_Del p.N275Mfs*8 0.09 TCGA-D8-A27V-01 2 225659734 225659734 C T DOCK10 Silent p.K1672K 0.24 TCGA-D8-A27V-01 2 225688250 225688250 T - DOCK10 Frame_Shift_Del p.R1051Gfs*65 0.09 TCGA-D8-A27V-01 2 225706574 225706574 T - DOCK10 Frame_Shift_Del p.R870Efs*21 0.09 TCGA-D8-A27V-01 2 227967541 227967541 T - COL4A4 Frame_Shift_Del p.G299Efs*26 0.09 TCGA-D8-A27V-01 2 230127458 230127458 G T PID1 Missense_Mutation p.L22I 0.26 tolerated_low_confidence(0.1) benign(0) TCGA-D8-A27V-01 2 231048310 231048310 A - SP110 Frame_Shift_Del p.Q443Rfs*24 0.08 TCGA-D8-A27V-01 2 231072718 231072718 T - SP110 Frame_Shift_Del p.S296Afs*36 0.08 TCGA-D8-A27V-01 2 231077077 231077077 T - SP110 Frame_Shift_Del p.T218Lfs*11 0.09 TCGA-D8-A27V-01 2 231113613 231113613 A - SP140 Frame_Shift_Del p.T304Lfs*44 0.08 TCGA-D8-A27V-01 2 231948325 231948325 A - PSMD1 Frame_Shift_Del p.N525Mfs*28 0.11 TCGA-D8-A27V-01 2 232104660 232104660 C - ARMC9 Frame_Shift_Del p.P263Lfs*43 0.08 TCGA-D8-A27V-01 2 233001200 233001200 A - DIS3L2 Frame_Shift_Del p.K242Nfs*96 0.08 TCGA-D8-A27V-01 2 233349535 233349535 C - ECEL1 Frame_Shift_Del p.Q346Sfs*15 0.09 TCGA-D8-A27V-01 2 233394765 233394765 C - CHRND Frame_Shift_Del p.L247Sfs*79 0.14 TCGA-D8-A27V-01 2 233635687 233635687 C - KCNJ13 Frame_Shift_Del p.G129Vfs*16 0.08 TCGA-D8-A27V-01 2 234091057 234091057 C - INPP5D Frame_Shift_Del p.S680Vfs*6 0.10 TCGA-D8-A27V-01 2 234091106 234091106 T - INPP5D Frame_Shift_Del p.F696Lfs*33 0.11 TCGA-D8-A27V-01 2 234451000 234451000 T - USP40 Frame_Shift_Del p.S338Vfs*5 0.08 TCGA-D8-A27V-01 2 234628179 234628179 T - UGT1A4 Frame_Shift_Del p.Q240Rfs*23 0.09 TCGA-D8-A27V-01 2 235962399 235962399 C - SH3BP4 Frame_Shift_Del p.L945Wfs*4 0.08 TCGA-D8-A27V-01 2 236626209 236626209 G - AGAP1 Frame_Shift_Del p.G78Vfs*15 0.10 TCGA-D8-A27V-01 2 236957722 236957722 G C AGAP1 Missense_Mutation p.L637F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D8-A27V-01 2 237374301 237374301 T - IQCA1 Frame_Shift_Del p.K258Rfs*11 0.09 TCGA-D8-A27V-01 2 241976675 241976675 C - SNED1 Frame_Shift_Del p.Q318Sfs*80 0.12 TCGA-D8-A27V-01 2 242187421 242187421 A - HDLBP Frame_Shift_Del p.L577Wfs*77 0.10 TCGA-D8-A27V-01 2 242192410 242192410 T - HDLBP Frame_Shift_Del p.K445Sfs*14 0.09 TCGA-D8-A27V-01 2 24469707 24469707 A - ITSN2 Frame_Shift_Del p.L1115Wfs*18 0.09 TCGA-D8-A27V-01 2 24494636 24494636 T - ITSN2 Frame_Shift_Del p.K752Nfs*9 0.08 TCGA-D8-A27V-01 2 24531564 24531564 C - ITSN2 Frame_Shift_Del p.A239Qfs*8 0.12 TCGA-D8-A27V-01 2 25656820 25656820 T - DTNB Frame_Shift_Del p.K434Nfs*52 0.09 TCGA-D8-A27V-01 2 26457157 26457157 A - HADHA Frame_Shift_Del p.E128Rfs*33 0.09 TCGA-D8-A27V-01 2 264972 264972 A - ACP1 Frame_Shift_Del p.E3Dfs*29 0.11 TCGA-D8-A27V-01 2 26501502 26501502 G - HADHB Frame_Shift_Del p.G155Afs*5 0.08 TCGA-D8-A27V-01 2 26676197 26676197 T - DRC1 Frame_Shift_Del p.C567Afs*70 0.11 TCGA-D8-A27V-01 2 272081 272081 C - ACP1 Intron 0.17 TCGA-D8-A27V-01 2 27262644 27262644 T - TMEM214 Frame_Shift_Del p.F521Sfs*86 0.10 TCGA-D8-A27V-01 2 27317481 27317481 T - KHK Splice_Site p.X115_splice 0.09 TCGA-D8-A27V-01 2 27591285 27591285 G A EIF2B4 Missense_Mutation p.H202Y 0.27 deleterious(0) probably_damaging(1) TCGA-D8-A27V-01 2 27597593 27597593 A - SNX17 Frame_Shift_Del p.N217Tfs*5 0.10 TCGA-D8-A27V-01 2 28055620 28055620 G - RBKS Frame_Shift_Del p.P180Lfs*27 0.11 TCGA-D8-A27V-01 2 28865850 28865850 G A PLB1 Missense_Mutation p.G1434R 0.26 tolerated(0.14) benign(0.142) TCGA-D8-A27V-01 2 31147000 31147000 T - GALNT14 Frame_Shift_Del p.D461Mfs*57 0.08 TCGA-D8-A27V-01 2 31189106 31189106 T - GALNT14 Frame_Shift_Del p.N126Tfs*15 0.08 TCGA-D8-A27V-01 2 31572684 31572684 T - XDH Frame_Shift_Del p.N946Tfs*8 0.10 TCGA-D8-A27V-01 2 31605974 31605974 T - XDH Frame_Shift_Del p.T311Pfs*62 0.11 TCGA-D8-A27V-01 2 37458870 37458870 G - NDUFAF7 Frame_Shift_Del p.G8Vfs*33 0.09 TCGA-D8-A27V-01 2 37471055 37471055 T - NDUFAF7 Frame_Shift_Del p.S245Lfs*4 0.10 TCGA-D8-A27V-01 2 37596881 37596881 T - QPCT Frame_Shift_Del p.P262Qfs*41 0.11 TCGA-D8-A27V-01 2 39008833 39008833 G A GEMIN6 Silent p.E101E 0.28 TCGA-D8-A27V-01 2 43520091 43520091 T - THADA Frame_Shift_Del p.K1567Sfs*3 0.19 TCGA-D8-A27V-01 2 43968124 43968124 C - PLEKHH2 Frame_Shift_Del p.H1056Ifs*12 0.08 TCGA-D8-A27V-01 2 43968135 43968135 T - PLEKHH2 Frame_Shift_Del p.F1059Sfs*9 0.09 TCGA-D8-A27V-01 2 44174451 44174451 T - LRPPRC Frame_Shift_Del p.N675Ifs*4 0.09 TCGA-D8-A27V-01 2 44570996 44570996 T - PREPL Frame_Shift_Del p.K168Nfs*7 0.09 TCGA-D8-A27V-01 2 45800425 45800425 T - SRBD1 Frame_Shift_Del p.K409Rfs*2 0.12 TCGA-D8-A27V-01 2 45826841 45826841 T - SRBD1 Frame_Shift_Del p.K132Sfs*2 0.08 TCGA-D8-A27V-01 2 48036794 48036794 A - FBXO11 Frame_Shift_Del p.F797Lfs*10 0.08 TCGA-D8-A27V-01 2 48818821 48818821 A - STON1-GTF2A1L Frame_Shift_Del p.K654Nfs*2 0.08 TCGA-D8-A27V-01 2 50779792 50779792 T - NRXN1 Frame_Shift_Del p.A605Pfs*3 0.10 TCGA-D8-A27V-01 2 54127101 54127101 G - PSME4 Frame_Shift_Del p.S1114Lfs*27 0.08 TCGA-D8-A27V-01 2 54152807 54152807 T - PSME4 Frame_Shift_Del p.S560Vfs*16 0.09 TCGA-D8-A27V-01 2 55106691 55106691 A - EML6 Frame_Shift_Del p.K785Nfs*8 0.09 TCGA-D8-A27V-01 2 55473549 55473549 T - MTIF2 Frame_Shift_Del p.M344Cfs*2 0.08 TCGA-D8-A27V-01 2 55481234 55481234 T - MTIF2 Frame_Shift_Del p.T203Lfs*28 0.12 TCGA-D8-A27V-01 2 55530261 55530261 A - CCDC88A Frame_Shift_Del p.L1471* 0.09 TCGA-D8-A27V-01 2 55785946 55785946 T - SMEK2 Frame_Shift_Del p.T807Pfs*8 0.09 TCGA-D8-A27V-01 2 58386813 58386813 T - VRK2 Frame_Shift_Del p.L505Yfs*39 0.09 TCGA-D8-A27V-01 2 61492568 61492568 C T USP34 Missense_Mutation p.M1914I 0.28 deleterious(0) probably_damaging(0.975) TCGA-D8-A27V-01 2 63486484 63486484 T - WDPCP Frame_Shift_Del p.R625Efs*10 0.09 TCGA-D8-A27V-01 2 63712078 63712078 T - WDPCP Frame_Shift_Del p.K99Nfs*12 0.09 TCGA-D8-A27V-01 2 64683444 64683444 G - LGALSL Frame_Shift_Del p.D75Tfs*86 0.08 TCGA-D8-A27V-01 2 67631411 67631411 A - ETAA1 Frame_Shift_Del p.N534Ifs*5 0.10 TCGA-D8-A27V-01 2 68691370 68691370 C - FBXO48 Frame_Shift_Del p.E147Kfs*3 0.12 TCGA-D8-A27V-01 2 71058239 71058239 G - CD207 Frame_Shift_Del p.P310Hfs*35 0.08 TCGA-D8-A27V-01 2 71163055 71163055 G C ATP6V1B1 5'UTR 0.25 TCGA-D8-A27V-01 2 71801492 71801492 G - DYSF Frame_Shift_Del p.A1133Pfs*5 0.10 TCGA-D8-A27V-01 2 72406540 72406540 T - EXOC6B Frame_Shift_Del p.N787Mfs*28 0.09 TCGA-D8-A27V-01 2 72692409 72692409 C - EXOC6B Frame_Shift_Del p.Q620Hfs*11 0.11 TCGA-D8-A27V-01 2 73490910 73490910 C - FBXO41 Frame_Shift_Del p.N658Tfs*3 0.15 TCGA-D8-A27V-01 2 74128546 74128546 G - ACTG2 Frame_Shift_Del p.G37Afs*8 0.15 TCGA-D8-A27V-01 2 74320096 74320096 C - TET3 Frame_Shift_Del p.P902Lfs*8 0.16 TCGA-D8-A27V-01 2 74594924 74594924 G - DCTN1 Frame_Shift_Del p.H695Mfs*66 0.10 TCGA-D8-A27V-01 2 74654365 74654365 T - RTKN Frame_Shift_Del p.I431Lfs*34 0.09 TCGA-D8-A27V-01 2 74867303 74867303 A - M1AP Frame_Shift_Del p.W34Gfs*18 0.09 TCGA-D8-A27V-01 2 84806684 84806684 A - DNAH6 Frame_Shift_Del p.V706Wfs*48 0.11 TCGA-D8-A27V-01 2 85043113 85043113 T - DNAH6 Frame_Shift_Del p.F4094Lfs*39 0.08 TCGA-D8-A27V-01 2 85571836 85571836 C - RETSAT Frame_Shift_Del p.T380Rfs*6 0.09 TCGA-D8-A27V-01 2 85628704 85628704 C - CAPG Frame_Shift_Del p.G100Afs*8 0.09 TCGA-D8-A27V-01 2 85828210 85828210 G - TMEM150A Frame_Shift_Del p.P45Lfs*48 0.11 TCGA-D8-A27V-01 2 86258671 86258671 C - POLR1A Frame_Shift_Del p.E1454Kfs*15 0.09 TCGA-D8-A27V-01 2 86308065 86308065 A - POLR1A Frame_Shift_Del p.F320Lfs*7 0.08 TCGA-D8-A27V-01 2 86371522 86371522 C - IMMT Frame_Shift_Del p.E716Nfs*10 0.09 TCGA-D8-A27V-01 2 86716782 86716782 G - KDM3A Frame_Shift_Del 0.09 TCGA-D8-A27V-01 2 89161395 89161395 C G IGKC 5'Flank 0.33 TCGA-D8-A27V-01 2 89278457 89278457 G - IGKV3-7 Frame_Shift_Del p.P16Qfs*8 0.10 TCGA-D8-A27V-01 2 89545005 89545005 G C IGKV2-30 Silent p.V15V 0.15 TCGA-D8-A27V-01 2 9531301 9531301 C - ASAP2 Frame_Shift_Del p.P833Lfs*4 0.14 TCGA-D8-A27V-01 2 9630483 9630483 G - ADAM17 Frame_Shift_Del p.S767Afs*87 0.08 TCGA-D8-A27V-01 2 9633909 9633909 C - ADAM17 Frame_Shift_Del p.D654Ifs*6 0.09 TCGA-D8-A27V-01 2 96948947 96948947 A - SNRNP200 Frame_Shift_Del p.F1636Sfs*19 0.12 TCGA-D8-A27V-01 2 98373716 98373716 C - TMEM131 Frame_Shift_Del p.G1833Afs*77 0.10 TCGA-D8-A27V-01 2 98392383 98392383 C - TMEM131 Frame_Shift_Del p.D1415Tfs*48 0.09 TCGA-D8-A27V-01 2 98409310 98409310 T - TMEM131 Frame_Shift_Del p.N1228Tfs*38 0.08 TCGA-D8-A27V-01 2 99410975 99410975 T - KIAA1211L 3'UTR 0.09 TCGA-D8-A27V-01 2 99725868 99725868 G - TSGA10 Frame_Shift_Del p.P12Hfs*12 0.08 TCGA-D8-A27V-01 3 100148709 100148709 A - LNP1 Frame_Shift_Del p.T47Pfs*97 0.15 TCGA-D8-A27V-01 3 100617610 100617610 C T ABI3BP Missense_Mutation p.D160N 0.11 deleterious(0.02) possibly_damaging(0.539) TCGA-D8-A27V-01 3 101046601 101046601 T - SENP7 Frame_Shift_Del p.N975Tfs*51 0.10 TCGA-D8-A27V-01 3 101231980 101231980 C - SENP7 5'UTR 0.10 TCGA-D8-A27V-01 3 101504452 101504452 T - NXPE3 Frame_Shift_Del p.F5Sfs*14 0.08 TCGA-D8-A27V-01 3 10327520 10327520 T - GHRL 3'UTR 0.11 TCGA-D8-A27V-01 3 108156543 108156543 C G MYH15 Missense_Mutation p.E1047Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A27V-01 3 108203971 108203971 T C MYH15 Missense_Mutation p.R381G 0.26 deleterious(0) benign(0.003) TCGA-D8-A27V-01 3 108224618 108224618 T - MYH15 Frame_Shift_Del p.S71Vfs*7 0.10 TCGA-D8-A27V-01 3 109046821 109046821 T - DPPA4 3'UTR 0.08 TCGA-D8-A27V-01 3 109050860 109050860 T - DPPA4 Frame_Shift_Del p.K66Rfs*28 0.08 TCGA-D8-A27V-01 3 109129018 109129018 C T RP11-702L6.4 RNA 0.31 TCGA-D8-A27V-01 3 111602931 111602931 G A PHLDB2 Missense_Mutation p.E3K 0.15 deleterious_low_confidence(0) benign(0.375) TCGA-D8-A27V-01 3 111681002 111681002 T - PHLDB2 Frame_Shift_Del p.Y975Ifs*12 0.09 TCGA-D8-A27V-01 3 113063400 113063400 T - WDR52 Frame_Shift_Del p.E1076Rfs*23 0.09 TCGA-D8-A27V-01 3 113300241 113300241 T - SIDT1 Frame_Shift_Del p.F233Lfs*8 0.08 TCGA-D8-A27V-01 3 113649573 113649573 C - GRAMD1C Frame_Shift_Del p.P369Lfs*11 0.10 TCGA-D8-A27V-01 3 114069743 114069743 A - ZBTB20 Frame_Shift_Del p.F394Lfs*33 0.09 TCGA-D8-A27V-01 3 114099109 114099109 T - ZBTB20 Frame_Shift_Del p.T52Hfs*4 0.12 TCGA-D8-A27V-01 3 119120900 119120900 T - ARHGAP31 Frame_Shift_Del p.F435Sfs*50 0.10 TCGA-D8-A27V-01 3 119449190 119449190 A - MAATS1 Frame_Shift_Del p.M330Wfs*16 0.11 TCGA-D8-A27V-01 3 120365175 120365175 G - HGD Frame_Shift_Del p.R197Gfs*32 0.16 TCGA-D8-A27V-01 3 121340803 121340803 T - FBXO40 Frame_Shift_Del p.V176Gfs*20 0.08 TCGA-D8-A27V-01 3 121350751 121350751 C - HCLS1 Frame_Shift_Del p.G468Dfs*21 0.08 TCGA-D8-A27V-01 3 121363760 121363760 C G HCLS1 Missense_Mutation p.E102Q 0.51 deleterious(0) possibly_damaging(0.728) TCGA-D8-A27V-01 3 124210209 124210209 C - KALRN Frame_Shift_Del p.C1542Afs*19 0.15 TCGA-D8-A27V-01 3 126178522 126178522 T - ZXDC Frame_Shift_Del p.K729Sfs*19 0.09 TCGA-D8-A27V-01 3 126178570 126178570 C - ZXDC Frame_Shift_Del p.G713Afs*12 0.09 TCGA-D8-A27V-01 3 12861630 12861630 T - CAND2 Frame_Shift_Del p.I998Sfs*12 0.10 TCGA-D8-A27V-01 3 128973537 128973537 A - COPG1 Frame_Shift_Del p.D118Tfs*27 0.08 TCGA-D8-A27V-01 3 129147348 129147348 G - EFCAB12 5'UTR 0.08 TCGA-D8-A27V-01 3 129200485 129200485 A - IFT122 Frame_Shift_Del p.N586Mfs*24 0.10 TCGA-D8-A27V-01 3 129262071 129262071 G - H1FOO Frame_Shift_Del p.S5Afs*93 0.12 TCGA-D8-A27V-01 3 129389990 129389990 C - TMCC1 Frame_Shift_Del p.A232Lfs*11 0.09 TCGA-D8-A27V-01 3 12961963 12961963 T - IQSEC1 Frame_Shift_Del p.M677* 0.10 TCGA-D8-A27V-01 3 130287422 130287422 T - COL6A6 Frame_Shift_Del p.F793Lfs*16 0.08 TCGA-D8-A27V-01 3 130653469 130653469 A - ATP2C1 Frame_Shift_Del p.N115Ifs*16 0.10 TCGA-D8-A27V-01 3 130715627 130715627 C - ATP2C1 Frame_Shift_Del p.P779Qfs*7 0.10 TCGA-D8-A27V-01 3 133647532 133647532 G A C3orf36 Missense_Mutation p.S39L 0.18 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-D8-A27V-01 3 134920362 134920362 G - EPHB1 Frame_Shift_Del p.G727Afs*6 0.10 TCGA-D8-A27V-01 3 135820981 135820981 T - PPP2R3A Frame_Shift_Del p.L1021Yfs*8 0.10 TCGA-D8-A27V-01 3 137483685 137483685 G - SOX14 Frame_Shift_Del p.G21Afs*22 0.12 TCGA-D8-A27V-01 3 137813821 137813821 T - DZIP1L Frame_Shift_Del p.K197Nfs*13 0.10 TCGA-D8-A27V-01 3 139077975 139077975 T - COPB2 Frame_Shift_Del p.A784Qfs*18 0.14 TCGA-D8-A27V-01 3 139079959 139079959 T - COPB2 Frame_Shift_Del p.N725Ifs*6 0.13 TCGA-D8-A27V-01 3 140397251 140397251 C - TRIM42 Frame_Shift_Del p.N62Tfs*70 0.08 TCGA-D8-A27V-01 3 140406994 140406994 C - TRIM42 Frame_Shift_Del p.T492Qfs*24 0.10 TCGA-D8-A27V-01 3 140998284 140998284 C - ACPL2 Frame_Shift_Del p.P102Hfs*47 0.11 TCGA-D8-A27V-01 3 141290273 141290273 T - RASA2 Frame_Shift_Del p.L350* 0.08 TCGA-D8-A27V-01 3 141884517 141884517 C - GK5 Frame_Shift_Del p.E513Kfs*7 0.08 TCGA-D8-A27V-01 3 14212004 14212004 C - XPC Frame_Shift_Del p.A116Lfs*3 0.09 TCGA-D8-A27V-01 3 142511743 142511743 A - TRPC1 Frame_Shift_Del p.N506Mfs*3 0.08 TCGA-D8-A27V-01 3 142746002 142746002 C - U2SURP Frame_Shift_Del p.L430* 0.10 TCGA-D8-A27V-01 3 14520683 14520683 T - SLC6A6 Frame_Shift_Del p.L515Sfs*16 0.09 TCGA-D8-A27V-01 3 145828182 145828182 T - PLOD2 Frame_Shift_Del p.K131Rfs*20 0.09 TCGA-D8-A27V-01 3 149260227 149260227 G - WWTR1 Frame_Shift_Del p.N223Mfs*3 0.13 TCGA-D8-A27V-01 3 150396303 150396303 C A FAM194A Missense_Mutation p.V384L 0.36 tolerated(0.53) benign(0.009) TCGA-D8-A27V-01 3 150916832 150916832 A - GPR171 Frame_Shift_Del p.Q115Sfs*2 0.19 TCGA-D8-A27V-01 3 151012329 151012329 T - GPR87 Frame_Shift_Del p.K235Nfs*7 0.08 TCGA-D8-A27V-01 3 151045997 151045997 T - P2RY13 Frame_Shift_Del p.T283Pfs*33 0.10 TCGA-D8-A27V-01 3 151107822 151107822 C - MED12L Frame_Shift_Del p.Q1802Kfs*2 0.12 TCGA-D8-A27V-01 3 153943728 153943728 A - ARHGEF26 Frame_Shift_Del p.R674Efs*35 0.11 TCGA-D8-A27V-01 3 15480677 15480677 A - EAF1 3'UTR 0.10 TCGA-D8-A27V-01 3 157815823 157815823 C - SHOX2 Frame_Shift_Del p.G354Vfs*44 0.15 TCGA-D8-A27V-01 3 158541248 158541248 C - MFSD1 Frame_Shift_Del p.C420Vfs*10 0.09 TCGA-D8-A27V-01 3 158541992 158541992 T - MFSD1 Frame_Shift_Del p.L469Wfs*22 0.10 TCGA-D8-A27V-01 3 159976366 159976366 T - IFT80 Frame_Shift_Del p.R761Efs*13 0.09 TCGA-D8-A27V-01 3 160122373 160122373 T - SMC4 Intron 0.09 TCGA-D8-A27V-01 3 161214887 161214887 T - OTOL1 Frame_Shift_Del p.L99* 0.09 TCGA-D8-A27V-01 3 167277956 167277956 T - WDR49 Frame_Shift_Del p.I183Sfs*26 0.10 TCGA-D8-A27V-01 3 167745537 167745537 G - GOLIM4 Frame_Shift_Del p.D535Tfs*11 0.08 TCGA-D8-A27V-01 3 168840367 168840367 C - MECOM Splice_Site p.X202_splice 0.08 TCGA-D8-A27V-01 3 170893075 170893075 G - TNIK Frame_Shift_Del p.R247Gfs*7 0.13 TCGA-D8-A27V-01 3 171452707 171452707 A - PLD1 Frame_Shift_Del p.L163Cfs*8 0.12 TCGA-D8-A27V-01 3 172080483 172080483 A - FNDC3B Frame_Shift_Del p.T954Lfs*11 0.11 TCGA-D8-A27V-01 3 17208335 17208335 T - TBC1D5 Frame_Shift_Del p.N695Tfs*45 0.09 TCGA-D8-A27V-01 3 172224516 172224516 T - TNFSF10 Frame_Shift_Del p.K204Nfs*19 0.11 TCGA-D8-A27V-01 3 174814752 174814752 G A NAALADL2 Silent p.Q72Q 0.61 TCGA-D8-A27V-01 3 176769333 176769333 T - TBL1XR1 Frame_Shift_Del p.N129Tfs*13 0.08 TCGA-D8-A27V-01 3 176782763 176782763 C G TBL1XR1 Translation_Start_Site p.M1? 0.39 tolerated(0.13) possibly_damaging(0.829) TCGA-D8-A27V-01 3 179481825 179481825 G - USP13 Frame_Shift_Del p.A711Qfs*23 0.09 TCGA-D8-A27V-01 3 180377509 180377509 T - CCDC39 Frame_Shift_Del p.R189Efs*12 0.08 TCGA-D8-A27V-01 3 180381683 180381683 T - CCDC39 Frame_Shift_Del p.N61Mfs*37 0.14 TCGA-D8-A27V-01 3 182897395 182897395 C - MCF2L2 Frame_Shift_Del p.G1064Efs*122 0.13 TCGA-D8-A27V-01 3 183689403 183689403 C - ABCC5 Frame_Shift_Del p.G570Afs*40 0.09 TCGA-D8-A27V-01 3 183732126 183732126 T - ABCC5 Frame_Shift_Del p.S19Vfs*2 0.12 TCGA-D8-A27V-01 3 183860891 183860891 T - EIF2B5 Frame_Shift_Del p.S570Lfs*18 0.09 TCGA-D8-A27V-01 3 184025206 184025206 T - PSMD2 Frame_Shift_Del p.S700Qfs*11 0.11 TCGA-D8-A27V-01 3 184026332 184026332 C - PSMD2 Frame_Shift_Del p.P841Qfs*70 0.10 TCGA-D8-A27V-01 3 185364814 185364814 T - IGF2BP2 Frame_Shift_Del p.Q569Rfs*14 0.08 TCGA-D8-A27V-01 3 185638956 185638956 C - TRA2B Frame_Shift_Del p.D220Ifs*72 0.11 TCGA-D8-A27V-01 3 188590524 188590524 T - LPP Frame_Shift_Del p.F562Sfs*43 0.09 TCGA-D8-A27V-01 3 189607236 189607236 C - TP63 Frame_Shift_Del p.P540Hfs*14 0.14 TCGA-D8-A27V-01 3 190106158 190106158 T - CLDN16 Frame_Shift_Del p.F85Sfs*6 0.16 TCGA-D8-A27V-01 3 190106173 190106173 T - CLDN16 Frame_Shift_Del p.L90* 0.09 TCGA-D8-A27V-01 3 190345194 190345194 A - IL1RAP Frame_Shift_Del p.K288Nfs*15 0.08 TCGA-D8-A27V-01 3 190362074 190362074 T - IL1RAP Frame_Shift_Del p.F364Lfs*7 0.09 TCGA-D8-A27V-01 3 191100537 191100537 A - CCDC50 Frame_Shift_Del p.T417Qfs*31 0.08 TCGA-D8-A27V-01 3 192973481 192973481 C - HRASLS Frame_Shift_Del p.C121Afs*5 0.08 TCGA-D8-A27V-01 3 193171917 193171917 T - ATP13A4 Frame_Shift_Del p.N667Mfs*8 0.11 TCGA-D8-A27V-01 3 195022737 195022737 T - ACAP2 Frame_Shift_Del p.N428Tfs*27 0.09 TCGA-D8-A27V-01 3 195389475 195389475 T - AC069513.4 5'Flank 0.14 TCGA-D8-A27V-01 3 195505265 195505265 G - MUC4 Frame_Shift_Del p.T4285Qfs*142 0.09 TCGA-D8-A27V-01 3 195802123 195802123 C A TFRC Missense_Mutation p.D49Y 0.26 deleterious(0.01) possibly_damaging(0.886) TCGA-D8-A27V-01 3 195997315 195997315 C - PCYT1A Frame_Shift_Del p.V30Ffs*33 0.09 TCGA-D8-A27V-01 3 196460766 196460766 C - PIGX Frame_Shift_Del p.L276Yfs*? 0.11 TCGA-D8-A27V-01 3 196650388 196650388 A - SENP5 Frame_Shift_Del p.D663Vfs*11 0.10 TCGA-D8-A27V-01 3 196675311 196675311 C - PIGZ Frame_Shift_Del p.A153Rfs*44 0.14 TCGA-D8-A27V-01 3 197640829 197640829 T - IQCG Frame_Shift_Del p.T271Pfs*30 0.09 TCGA-D8-A27V-01 3 21552356 21552356 T - ZNF385D Frame_Shift_Del p.T146Qfs*24 0.12 TCGA-D8-A27V-01 3 27759210 27759210 C - EOMES Frame_Shift_Del p.G471Afs*61 0.08 TCGA-D8-A27V-01 3 3216890 3216890 G - CRBN Frame_Shift_Del p.P44Qfs*4 0.09 TCGA-D8-A27V-01 3 32801010 32801010 T - CNOT10 Frame_Shift_Del p.L613* 0.09 TCGA-D8-A27V-01 3 33114044 33114044 G - GLB1 Frame_Shift_Del p.I80Sfs*41 0.11 TCGA-D8-A27V-01 3 33195348 33195348 T - SUSD5 Frame_Shift_Del p.N259Tfs*2 0.11 TCGA-D8-A27V-01 3 33450770 33450770 T - UBP1 Frame_Shift_Del p.E260Kfs*15 0.09 TCGA-D8-A27V-01 3 33450784 33450784 T - UBP1 Frame_Shift_Del p.T255Qfs*20 0.09 TCGA-D8-A27V-01 3 36779712 36779712 C - DCLK3 Frame_Shift_Del p.E147Sfs*32 0.10 TCGA-D8-A27V-01 3 36888773 36888773 T - TRANK1 Frame_Shift_Del p.N1607Tfs*22 0.08 TCGA-D8-A27V-01 3 37033280 37033280 T - EPM2AIP1 Frame_Shift_Del p.N430Ifs*2 0.12 TCGA-D8-A27V-01 3 37152548 37152548 G C LRRFIP2 Silent p.L149L 0.27 TCGA-D8-A27V-01 3 37356999 37356999 A - GOLGA4 Frame_Shift_Del p.T465Lfs*17 0.08 TCGA-D8-A27V-01 3 38105375 38105375 T - DLEC1 Frame_Shift_Del p.F381Sfs*13 0.09 TCGA-D8-A27V-01 3 38159082 38159082 C - DLEC1 Frame_Shift_Del p.E1490Sfs*8 0.12 TCGA-D8-A27V-01 3 38350501 38350501 T - SLC22A14 Frame_Shift_Del p.F279Sfs*8 0.20 TCGA-D8-A27V-01 3 38798242 38798242 G - SCN10A Frame_Shift_Del p.Q405Rfs*28 0.08 TCGA-D8-A27V-01 3 39225672 39225672 C - XIRP1 Frame_Shift_Del p.P1756Qfs*10 0.08 TCGA-D8-A27V-01 3 39433042 39433042 G - SLC25A38 Frame_Shift_Del p.V131Wfs*16 0.12 TCGA-D8-A27V-01 3 41288373 41288373 C - ULK4 3'UTR 0.18 TCGA-D8-A27V-01 3 41860914 41860914 C - ULK4 Splice_Site p.X616_splice 0.09 TCGA-D8-A27V-01 3 44906633 44906633 C - TMEM42 Frame_Shift_Del p.P148Hfs*48 0.10 TCGA-D8-A27V-01 3 45561781 45561781 C - LARS2 Frame_Shift_Del p.L763Sfs*22 0.15 TCGA-D8-A27V-01 3 4562736 4562736 C - ITPR1 Frame_Shift_Del p.P41Qfs*23 0.12 TCGA-D8-A27V-01 3 46619440 46619440 C - TDGF1 5'UTR 0.08 TCGA-D8-A27V-01 3 46963538 46963538 G - CCDC12 3'UTR 0.11 TCGA-D8-A27V-01 3 47032791 47032791 A - NBEAL2 Frame_Shift_Del p.K214Rfs*8 0.08 TCGA-D8-A27V-01 3 47041663 47041663 G - NBEAL2 Frame_Shift_Del p.G1359Afs*7 0.10 TCGA-D8-A27V-01 3 47950659 47950659 T - MAP4 Intron 0.11 TCGA-D8-A27V-01 3 4836786 4836786 T - ITPR1 Frame_Shift_Del p.F2268Sfs*12 0.09 TCGA-D8-A27V-01 3 48476335 48476335 C - CCDC51 Frame_Shift_Del p.H69Tfs*34 0.13 TCGA-D8-A27V-01 3 48576716 48576716 C - PFKFB4 Frame_Shift_Del p.D161Ifs*5 0.09 TCGA-D8-A27V-01 3 49017052 49017052 T - ARIH2 Frame_Shift_Del p.F367Sfs*15 0.12 TCGA-D8-A27V-01 3 49397778 49397778 T - RHOA Frame_Shift_Del p.N149Tfs*19 0.09 TCGA-D8-A27V-01 3 49463821 49463821 A - NICN1 Frame_Shift_Del p.L58* 0.10 TCGA-D8-A27V-01 3 49714107 49714107 G - APEH Frame_Shift_Del p.G271Afs*37 0.11 TCGA-D8-A27V-01 3 49719325 49719325 C - APEH Frame_Shift_Del p.H511Ifs*24 0.14 TCGA-D8-A27V-01 3 49761064 49761064 G - GMPPB Frame_Shift_Del p.I33Sfs*9 0.11 TCGA-D8-A27V-01 3 49896936 49896936 T - CAMKV Frame_Shift_Del p.S441Afs*63 0.11 TCGA-D8-A27V-01 3 50255117 50255117 A - SLC38A3 RNA 0.16 TCGA-D8-A27V-01 3 50290558 50290558 G - GNAI2 Frame_Shift_Del p.G136Vfs*22 0.13 TCGA-D8-A27V-01 3 50381203 50381203 C T ZMYND10 Missense_Mutation p.D94N 0.23 tolerated(0.14) benign(0.214) TCGA-D8-A27V-01 3 50382634 50382634 T - ZMYND10 Frame_Shift_Del p.K41Sfs*2 0.10 TCGA-D8-A27V-01 3 50421692 50421692 T - CACNA2D2 Frame_Shift_Del p.N196Tfs*103 0.09 TCGA-D8-A27V-01 3 50647806 50647806 G - CISH Frame_Shift_Del p.R24Dfs*64 0.08 TCGA-D8-A27V-01 3 51399341 51399341 A - DOCK3 Frame_Shift_Del p.H1687Mfs*10 0.09 TCGA-D8-A27V-01 3 51992953 51992953 C T PCBP4 Missense_Mutation p.R259H 0.35 deleterious(0.03) probably_damaging(1) TCGA-D8-A27V-01 3 52257292 52257292 T - TLR9 Frame_Shift_Del p.K501Rfs*20 0.09 TCGA-D8-A27V-01 3 52258036 52258036 G - TLR9 Frame_Shift_Del p.P253Rfs*14 0.10 TCGA-D8-A27V-01 3 52547917 52547917 G - STAB1 Frame_Shift_Del p.D1124Mfs*106 0.13 TCGA-D8-A27V-01 3 52555474 52555474 T - STAB1 Frame_Shift_Del p.T2004Qfs*108 0.08 TCGA-D8-A27V-01 3 52555499 52555499 C - STAB1 Frame_Shift_Del p.P2011Lfs*101 0.08 TCGA-D8-A27V-01 3 52588798 52588798 C - PBRM1 Frame_Shift_Del p.P1411Lfs*21 0.11 TCGA-D8-A27V-01 3 52731883 52731883 C - GLT8D1 Frame_Shift_Del p.R62Dfs*23 0.09 TCGA-D8-A27V-01 3 52740883 52740883 T - SPCS1 Frame_Shift_Del p.S126Hfs*4 0.09 TCGA-D8-A27V-01 3 52813481 52813481 C - ITIH1 Frame_Shift_Del p.H149Tfs*14 0.09 TCGA-D8-A27V-01 3 52825871 52825871 G - ITIH1 Frame_Shift_Del p.A895Lfs*39 0.11 TCGA-D8-A27V-01 3 52941212 52941212 T - SFMBT1 Frame_Shift_Del p.K735Sfs*45 0.12 TCGA-D8-A27V-01 3 53156428 53156428 A - RFT1 Frame_Shift_Del p.W140Gfs*10 0.13 TCGA-D8-A27V-01 3 53757830 53757830 C - CACNA1D Frame_Shift_Del p.L656* 0.09 TCGA-D8-A27V-01 3 58095775 58095775 T - FLNB Frame_Shift_Del p.L788* 0.09 TCGA-D8-A27V-01 3 58196554 58196554 T - DNASE1L3 Frame_Shift_Del p.N27Tfs*20 0.10 TCGA-D8-A27V-01 3 58519206 58519206 G - ACOX2 Frame_Shift_Del p.T184Rfs*2 0.13 TCGA-D8-A27V-01 3 58855990 58855990 T - C3orf67 Frame_Shift_Del p.N129Ifs*26 0.11 TCGA-D8-A27V-01 3 62356992 62356992 T - FEZF2 Frame_Shift_Del p.A341Rfs*41 0.08 TCGA-D8-A27V-01 3 62459911 62459911 A - CADPS Frame_Shift_Del p.F1138Lfs*29 0.12 TCGA-D8-A27V-01 3 63594860 63594860 A - SYNPR Frame_Shift_Del p.G158Dfs*17 0.09 TCGA-D8-A27V-01 3 64627560 64627560 C - ADAMTS9 Frame_Shift_Del p.G607Afs*22 0.09 TCGA-D8-A27V-01 3 65342575 65342575 G - MAGI1 Frame_Shift_Del p.D1290Tfs*145 0.09 TCGA-D8-A27V-01 3 66463326 66463326 C - LRIG1 Frame_Shift_Del p.A254Pfs*19 0.15 TCGA-D8-A27V-01 3 70000969 70000969 T - MITF Intron 0.09 TCGA-D8-A27V-01 3 73024283 73024283 C A GXYLT2 Silent p.I435I 0.25 TCGA-D8-A27V-01 3 73434898 73434898 A - PDZRN3 Frame_Shift_Del p.L520Wfs*137 0.08 TCGA-D8-A27V-01 3 74334592 74334592 T - CNTN3 Frame_Shift_Del p.V857Wfs*13 0.08 TCGA-D8-A27V-01 3 74413662 74413662 T - CNTN3 Frame_Shift_Del p.N390Tfs*26 0.11 TCGA-D8-A27V-01 3 81584428 81584428 T - GBE1 Frame_Shift_Del p.R618Efs*33 0.08 TCGA-D8-A27V-01 3 87017751 87017751 C - VGLL3 Frame_Shift_Del p.G309Dfs*48 0.09 TCGA-D8-A27V-01 3 8787494 8787494 T - CAV3 Frame_Shift_Del p.F133Sfs*120 0.09 TCGA-D8-A27V-01 3 88188479 88188479 T - ZNF654 Frame_Shift_Del p.L8* 0.12 TCGA-D8-A27V-01 3 8923020 8923020 A - RAD18 3'UTR 0.08 TCGA-D8-A27V-01 3 8923136 8923136 G T RAD18 Missense_Mutation p.L465I 0.30 tolerated(0.22) benign(0.06) TCGA-D8-A27V-01 3 9052018 9052018 C - SRGAP3 Frame_Shift_Del p.G734Afs*65 0.10 TCGA-D8-A27V-01 3 9470643 9470643 G - SETD5 Frame_Shift_Del p.G8Efs*60 0.10 TCGA-D8-A27V-01 3 9515106 9515106 A - SETD5 Frame_Shift_Del p.K1129Nfs*15 0.11 TCGA-D8-A27V-01 3 9726923 9726923 G - MTMR14 Frame_Shift_Del p.E387Rfs*11 0.10 TCGA-D8-A27V-01 3 97851842 97851842 T - OR5H1 Frame_Shift_Del p.S103Rfs*6 0.10 TCGA-D8-A27V-01 3 9807505 9807505 A - OGG1 Frame_Shift_Del p.N321Mfs*64 0.09 TCGA-D8-A27V-01 3 98530321 98530321 T - DCBLD2 Frame_Shift_Del p.I481* 0.09 TCGA-D8-A27V-01 3 9857781 9857781 C - TTLL3 Intron 0.09 TCGA-D8-A27V-01 3 9876804 9876804 C - TTLL3 Frame_Shift_Del p.Q795Sfs*11 0.10 TCGA-D8-A27V-01 3 9879846 9879846 G - RPUSD3 Frame_Shift_Del p.Q304Rfs*63 0.15 TCGA-D8-A27V-01 4 100203636 100203636 T - ADH1A Frame_Shift_Del p.K232Rfs*24 0.08 TCGA-D8-A27V-01 4 100470297 100470297 T - TRMT10A Frame_Shift_Del p.K323Sfs*12 0.09 TCGA-D8-A27V-01 4 102117116 102117116 A - PPP3CA Frame_Shift_Del p.R73Dfs*26 0.10 TCGA-D8-A27V-01 4 103174544 103174544 G T SLC39A8 3'UTR 0.25 TCGA-D8-A27V-01 4 103557111 103557111 G C MANBA Missense_Mutation p.P690A 0.34 tolerated(0.08) benign(0.163) TCGA-D8-A27V-01 4 104119482 104119482 C T CENPE 5'UTR 0.29 TCGA-D8-A27V-01 4 107163670 107163670 A - TBCK Frame_Shift_Del p.L376* 0.10 TCGA-D8-A27V-01 4 108940786 108940786 T - HADH Frame_Shift_Del p.F171Sfs*8 0.10 TCGA-D8-A27V-01 4 114274236 114274236 A - ANK2 Frame_Shift_Del p.S1489Vfs*10 0.12 TCGA-D8-A27V-01 4 114275429 114275429 A - ANK2 Frame_Shift_Del p.T1887Lfs*107 0.13 TCGA-D8-A27V-01 4 114473189 114473189 G - CAMK2D Frame_Shift_Del p.S114Vfs*8 0.10 TCGA-D8-A27V-01 4 119621751 119621751 T - METTL14 Frame_Shift_Del p.L233Sfs*43 0.11 TCGA-D8-A27V-01 4 120188541 120188541 T - USP53 Frame_Shift_Del p.Y348Mfs*37 0.09 TCGA-D8-A27V-01 4 121742345 121742345 T - PRDM5 Frame_Shift_Del p.Q152Hfs*76 0.10 TCGA-D8-A27V-01 4 122082303 122082303 T - TNIP3 Frame_Shift_Del p.K122Nfs*20 0.11 TCGA-D8-A27V-01 4 122301607 122301607 C - QRFPR Frame_Shift_Del p.V66Cfs*5 0.10 TCGA-D8-A27V-01 4 123140615 123140615 A - KIAA1109 Frame_Shift_Del p.K791Rfs*56 0.08 TCGA-D8-A27V-01 4 123818583 123818583 C G FGF2 3'UTR 0.33 TCGA-D8-A27V-01 4 124323538 124323538 T - SPRY1 Frame_Shift_Del p.L265Yfs*16 0.12 TCGA-D8-A27V-01 4 125590860 125590860 G C ANKRD50 Missense_Mutation p.S1191C 0.28 deleterious(0.01) probably_damaging(0.921) TCGA-D8-A27V-01 4 128625424 128625424 G - INTU Frame_Shift_Del p.S517Lfs*9 0.09 TCGA-D8-A27V-01 4 13602922 13602922 C - BOD1L1 Frame_Shift_Del p.E1868Rfs*4 0.09 TCGA-D8-A27V-01 4 140189853 140189853 T - MGARP Frame_Shift_Del p.T85Qfs*30 0.08 TCGA-D8-A27V-01 4 140811337 140811337 G - MAML3 Frame_Shift_Del p.P418Lfs*23 0.08 TCGA-D8-A27V-01 4 141483346 141483346 C - UCP1 Splice_Site p.X270_splice 0.09 TCGA-D8-A27V-01 4 141549469 141549469 T - TBC1D9 Frame_Shift_Del p.M933Cfs*53 0.10 TCGA-D8-A27V-01 4 143129633 143129633 A - INPP4B Frame_Shift_Del p.F339Lfs*4 0.09 TCGA-D8-A27V-01 4 145032509 145032509 T - GYPA 3'UTR 0.09 TCGA-D8-A27V-01 4 147561121 147561121 C - POU4F2 Frame_Shift_Del p.H132Tfs*14 0.09 TCGA-D8-A27V-01 4 148461009 148461009 T - EDNRA Frame_Shift_Del p.F315Lfs*10 0.09 TCGA-D8-A27V-01 4 149075776 149075776 T - NR3C2 Frame_Shift_Del p.N764Ifs*9 0.14 TCGA-D8-A27V-01 4 152499220 152499220 T - FAM160A1 Frame_Shift_Del p.C243Vfs*19 0.09 TCGA-D8-A27V-01 4 152510000 152510000 C - FAM160A1 Frame_Shift_Del p.L302* 0.09 TCGA-D8-A27V-01 4 152638079 152638079 T - PET112 Frame_Shift_Del p.S197Afs*6 0.09 TCGA-D8-A27V-01 4 154517418 154517418 T - KIAA0922 Frame_Shift_Del p.S669Lfs*18 0.10 TCGA-D8-A27V-01 4 15570981 15570981 T - CC2D2A Frame_Shift_Del p.F1156Lfs*9 0.11 TCGA-D8-A27V-01 4 166795076 166795076 C - TLL1 Frame_Shift_Del p.P8Rfs*41 0.10 TCGA-D8-A27V-01 4 169206051 169206051 T - DDX60 Frame_Shift_Del p.K494Rfs*15 0.08 TCGA-D8-A27V-01 4 170057665 170057665 T - SH3RF1 Frame_Shift_Del p.K291Sfs*69 0.10 TCGA-D8-A27V-01 4 170601266 170601266 G T CLCN3 Missense_Mutation p.D76Y 0.20 deleterious(0) possibly_damaging(0.897) TCGA-D8-A27V-01 4 170652894 170652894 C - C4orf27 Frame_Shift_Del p.E292Nfs*29 0.11 TCGA-D8-A27V-01 4 170652933 170652933 A - C4orf27 Frame_Shift_Del p.F277Lfs*44 0.13 TCGA-D8-A27V-01 4 174216916 174216916 T - GALNT7 Frame_Shift_Del p.L297* 0.09 TCGA-D8-A27V-01 4 174448484 174448484 T - HAND2 Frame_Shift_Del p.T200Pfs*52 0.09 TCGA-D8-A27V-01 4 177017694 177017694 A - WDR17 Frame_Shift_Del p.N9Ifs*20 0.09 TCGA-D8-A27V-01 4 177036998 177036998 A - WDR17 Frame_Shift_Del p.T85Qfs*23 0.11 TCGA-D8-A27V-01 4 17709342 17709342 T - FAM184B Frame_Shift_Del p.K320Nfs*13 0.10 TCGA-D8-A27V-01 4 184186181 184186181 A - WWC2 Frame_Shift_Del p.T655Pfs*24 0.10 TCGA-D8-A27V-01 4 184605364 184605364 A - TRAPPC11 Frame_Shift_Del p.S453Vfs*3 0.08 TCGA-D8-A27V-01 4 184930554 184930554 A - STOX2 Frame_Shift_Del p.R189Gfs*56 0.23 TCGA-D8-A27V-01 4 185074855 185074855 C - ENPP6 Frame_Shift_Del p.N92Tfs*21 0.12 TCGA-D8-A27V-01 4 185340640 185340640 T - IRF2 Frame_Shift_Del p.N57Tfs*13 0.09 TCGA-D8-A27V-01 4 186112121 186112121 G - KIAA1430 Frame_Shift_Del p.P77Qfs*5 0.08 TCGA-D8-A27V-01 4 186423551 186423551 C - PDLIM3 Frame_Shift_Del p.G331Afs*5 0.15 TCGA-D8-A27V-01 4 186510856 186510856 T - SORBS2 Frame_Shift_Del p.K1173Sfs*36 0.08 TCGA-D8-A27V-01 4 186598564 186598564 T - SORBS2 Intron 0.14 TCGA-D8-A27V-01 4 187454839 187454839 T - MTNR1A 3'UTR 0.09 TCGA-D8-A27V-01 4 187535367 187535367 T - FAT1 Frame_Shift_Del p.K3069Nfs*4 0.12 TCGA-D8-A27V-01 4 189026071 189026071 T - TRIML2 Frame_Shift_Del p.I19Yfs*2 0.09 TCGA-D8-A27V-01 4 190947540 190947540 T - FRG2 Frame_Shift_Del p.N112Tfs*11 0.11 TCGA-D8-A27V-01 4 20706141 20706141 A - PACRGL Frame_Shift_Del p.N14Tfs*17 0.12 TCGA-D8-A27V-01 4 2214775 2214775 T - POLN Frame_Shift_Del p.K71Rfs*6 0.09 TCGA-D8-A27V-01 4 23833282 23833282 A - PPARGC1A Frame_Shift_Del p.F109Lfs*4 0.09 TCGA-D8-A27V-01 4 24833161 24833161 T - CCDC149 Frame_Shift_Del p.N311Tfs*14 0.10 TCGA-D8-A27V-01 4 26741556 26741556 T - TBC1D19 Frame_Shift_Del p.F398Sfs*59 0.09 TCGA-D8-A27V-01 4 26750101 26750101 T - TBC1D19 Frame_Shift_Del p.L464Yfs*6 0.08 TCGA-D8-A27V-01 4 26921246 26921246 A - STIM2 Frame_Shift_Del p.S92Vfs*9 0.10 TCGA-D8-A27V-01 4 2701776 2701776 G A FAM193A Missense_Mutation p.D1002N 0.32 tolerated(0.31) benign(0.004) TCGA-D8-A27V-01 4 2895762 2895762 A - ADD1 Frame_Shift_Del p.E178Dfs*15 0.10 TCGA-D8-A27V-01 4 3319756 3319756 G A RGS12 Missense_Mutation p.R620Q 0.33 tolerated(0.25) benign(0.018) TCGA-D8-A27V-01 4 37863183 37863183 G - PGM2 Frame_Shift_Del p.E597Nfs*37 0.08 TCGA-D8-A27V-01 4 38828775 38828775 A - TLR6 Frame_Shift_Del p.W774Gfs*10 0.12 TCGA-D8-A27V-01 4 39217732 39217732 T - WDR19 Frame_Shift_Del p.S385Lfs*11 0.08 TCGA-D8-A27V-01 4 39466781 39466781 G - LIAS Frame_Shift_Del p.G171Vfs*7 0.09 TCGA-D8-A27V-01 4 39779392 39779392 A - UBE2K Frame_Shift_Del p.I166* 0.10 TCGA-D8-A27V-01 4 40245069 40245069 G - RHOH Frame_Shift_Del p.V22Cfs*59 0.10 TCGA-D8-A27V-01 4 40350954 40350954 G - CHRNA9 Frame_Shift_Del p.L142* 0.09 TCGA-D8-A27V-01 4 41016228 41016228 T - APBB2 Frame_Shift_Del p.K69Nfs*4 0.08 TCGA-D8-A27V-01 4 4276252 4276252 T - LYAR Frame_Shift_Del p.K225Rfs*63 0.11 TCGA-D8-A27V-01 4 4422622 4422622 T - STX18 Frame_Shift_Del p.N294Ifs*9 0.09 TCGA-D8-A27V-01 4 46252453 46252453 T - GABRA2 Frame_Shift_Del p.T410Lfs*14 0.09 TCGA-D8-A27V-01 4 47589080 47589080 T - ATP10D Frame_Shift_Del p.L1268Yfs*4 0.09 TCGA-D8-A27V-01 4 47853931 47853931 T - NFXL1 Frame_Shift_Del p.N817Ifs*5 0.09 TCGA-D8-A27V-01 4 5141670 5141670 A - STK32B Frame_Shift_Del p.S33Vfs*19 0.09 TCGA-D8-A27V-01 4 55153699 55153699 T - PDGFRA Frame_Shift_Del p.S890Pfs*10 0.11 TCGA-D8-A27V-01 4 5642308 5642308 T - EVC2 Frame_Shift_Del p.N468Tfs*7 0.10 TCGA-D8-A27V-01 4 62679543 62679543 A - LPHN3 Frame_Shift_Del p.Q405Kfs*15 0.08 TCGA-D8-A27V-01 4 6612615 6612615 C - MAN2B2 Frame_Shift_Del p.M758Wfs*54 0.12 TCGA-D8-A27V-01 4 66356248 66356248 G - EPHA5 Frame_Shift_Del p.R417Gfs*5 0.09 TCGA-D8-A27V-01 4 70592876 70592876 T - SULT1B1 Frame_Shift_Del p.N274Mfs*31 0.11 TCGA-D8-A27V-01 4 71275429 71275429 T - PROL1 Frame_Shift_Del p.A132Lfs*13 0.09 TCGA-D8-A27V-01 4 71347102 71347102 C - MUC7 Frame_Shift_Del p.P215Hfs*55 0.08 TCGA-D8-A27V-01 4 71347402 71347402 C - MUC7 Frame_Shift_Del p.P315Qfs*49 0.09 TCGA-D8-A27V-01 4 71471980 71471980 C T AMBN Missense_Mutation p.P293S 0.21 deleterious(0.03) benign(0.207) TCGA-D8-A27V-01 4 71554953 71554953 G A UTP3 Missense_Mutation p.E187K 0.35 tolerated(0.06) benign(0.011) TCGA-D8-A27V-01 4 72412085 72412085 T - SLC4A4 Frame_Shift_Del p.L821Wfs*22 0.10 TCGA-D8-A27V-01 4 73164043 73164043 A - ADAMTS3 Frame_Shift_Del p.F847Lfs*5 0.10 TCGA-D8-A27V-01 4 73186466 73186466 A - ADAMTS3 Frame_Shift_Del p.L356* 0.11 TCGA-D8-A27V-01 4 74275153 74275153 T - ALB Frame_Shift_Del p.F189Lfs*52 0.11 TCGA-D8-A27V-01 4 74364923 74364923 G - AFM Frame_Shift_Del p.C461Sfs*4 0.09 TCGA-D8-A27V-01 4 76720855 76720855 T - USO1 Frame_Shift_Del p.L522Ffs*48 0.11 TCGA-D8-A27V-01 4 77020119 77020119 C - ART3 Frame_Shift_Del p.I277Sfs*38 0.08 TCGA-D8-A27V-01 4 77065570 77065570 A - NUP54 Frame_Shift_Del p.S42Lfs*36 0.09 TCGA-D8-A27V-01 4 77631384 77631384 C - SHROOM3 Frame_Shift_Del p.Q135Sfs*15 0.10 TCGA-D8-A27V-01 4 77676009 77676009 A - SHROOM3 Frame_Shift_Del p.K1459Nfs*52 0.09 TCGA-D8-A27V-01 4 79418115 79418115 G - FRAS1 Frame_Shift_Del 0.13 TCGA-D8-A27V-01 4 82010955 82010955 G C PRKG2 Silent p.L732L 0.25 TCGA-D8-A27V-01 4 82065396 82065396 T - PRKG2 Frame_Shift_Del p.R415Dfs*20 0.10 TCGA-D8-A27V-01 4 83860786 83860786 T - LIN54 Frame_Shift_Del p.N449Tfs*41 0.08 TCGA-D8-A27V-01 4 844764 844764 T - GAK Frame_Shift_Del p.K1206Sfs*13 0.08 TCGA-D8-A27V-01 4 85660209 85660209 G - WDFY3 Frame_Shift_Del p.S2177Rfs*21 0.08 TCGA-D8-A27V-01 4 85752727 85752727 G - WDFY3 Frame_Shift_Del p.P203Lfs*18 0.09 TCGA-D8-A27V-01 4 87556494 87556494 G - PTPN13 Frame_Shift_Del p.A29Lfs*11 0.09 TCGA-D8-A27V-01 4 87691300 87691300 T - PTPN13 Frame_Shift_Del p.L1590Sfs*17 0.08 TCGA-D8-A27V-01 4 88356370 88356370 C T NUDT9 Silent p.I115I 0.23 TCGA-D8-A27V-01 4 89052271 89052271 T - ABCG2 Frame_Shift_Del p.N158Tfs*11 0.10 TCGA-D8-A27V-01 4 94006274 94006274 G - GRID2 Frame_Shift_Del p.T126Pfs*32 0.14 TCGA-D8-A27V-01 4 952146 952146 C T TMEM175 Silent p.F459F 0.27 TCGA-D8-A27V-01 4 96140374 96140374 G - UNC5C Frame_Shift_Del p.P464Qfs*2 0.13 TCGA-D8-A27V-01 4 99808300 99808300 C - EIF4E Frame_Shift_Del p.G110Efs*5 0.10 TCGA-D8-A27V-01 5 10417438 10417438 G - MARCH6 Frame_Shift_Del p.L737Sfs*11 0.09 TCGA-D8-A27V-01 5 108714016 108714016 T - PJA2 Frame_Shift_Del p.N391Ifs*4 0.10 TCGA-D8-A27V-01 5 109183425 109183425 C - MAN2A1 Frame_Shift_Del p.Q971Rfs*14 0.08 TCGA-D8-A27V-01 5 112406835 112406835 T - MCC Frame_Shift_Del p.K627Nfs*9 0.09 TCGA-D8-A27V-01 5 112437570 112437570 C - MCC Frame_Shift_Del p.E422Rfs*7 0.12 TCGA-D8-A27V-01 5 112884671 112884671 A - YTHDC2 Frame_Shift_Del p.K548Nfs*12 0.09 TCGA-D8-A27V-01 5 11384887 11384887 T - CTNND2 Frame_Shift_Del p.Y356Sfs*65 0.08 TCGA-D8-A27V-01 5 114515705 114515705 A - TRIM36 Frame_Shift_Del p.F10Lfs*7 0.11 TCGA-D8-A27V-01 5 115336805 115336805 A - AQPEP Frame_Shift_Del p.N565Tfs*2 0.11 TCGA-D8-A27V-01 5 118502316 118502316 A - DMXL1 Frame_Shift_Del p.N1661Tfs*4 0.11 TCGA-D8-A27V-01 5 121786491 121786491 G C SNCAIP Missense_Mutation p.R650T 0.27 tolerated(0.11) probably_damaging(0.997) TCGA-D8-A27V-01 5 1219105 1219105 T - SLC6A19 Frame_Shift_Del p.F421Sfs*55 0.10 TCGA-D8-A27V-01 5 122359602 122359602 T - PPIC Frame_Shift_Del p.T203Rfs*59 0.09 TCGA-D8-A27V-01 5 1255464 1255464 A - TERT Frame_Shift_Del p.F1032Sfs*16 0.11 TCGA-D8-A27V-01 5 127644951 127644951 T - FBN2 Frame_Shift_Del p.T1781Lfs*71 0.15 TCGA-D8-A27V-01 5 127704912 127704912 A - FBN2 Frame_Shift_Del p.F737Lfs*24 0.08 TCGA-D8-A27V-01 5 130771889 130771889 T - RAPGEF6 Intron 0.10 TCGA-D8-A27V-01 5 130828335 130828335 A - RAPGEF6 Frame_Shift_Del p.F557Lfs*5 0.11 TCGA-D8-A27V-01 5 131396417 131396417 C - IL3 Frame_Shift_Del p.L7Cfs*16 0.11 TCGA-D8-A27V-01 5 131606698 131606698 C - PDLIM4 Frame_Shift_Del p.P141Lfs*19 0.10 TCGA-D8-A27V-01 5 131821380 131821380 T - IRF1 Frame_Shift_Del p.K232Nfs*7 0.12 TCGA-D8-A27V-01 5 132100092 132100092 T - SEPT8 Frame_Shift_Del p.K57Nfs*4 0.08 TCGA-D8-A27V-01 5 132160434 132160434 C - SHROOM1 Frame_Shift_Del p.V372Sfs*20 0.08 TCGA-D8-A27V-01 5 133292655 133292655 T - C5orf15 Frame_Shift_Del p.K231Nfs*16 0.08 TCGA-D8-A27V-01 5 133496754 133496754 T - SKP1 Frame_Shift_Del p.K80Sfs*14 0.09 TCGA-D8-A27V-01 5 133655088 133655088 T - CDKL3 Frame_Shift_Del p.K251Nfs*12 0.14 TCGA-D8-A27V-01 5 134223580 134223580 A - TXNDC15 Frame_Shift_Del p.A101Lfs*5 0.09 TCGA-D8-A27V-01 5 134344576 134344576 T - CATSPER3 Frame_Shift_Del p.F241Lfs*3 0.09 TCGA-D8-A27V-01 5 134705129 134705129 T - H2AFY Frame_Shift_Del p.A149Qfs*49 0.10 TCGA-D8-A27V-01 5 136403424 136403424 T - SPOCK1 Frame_Shift_Del p.K190Sfs*21 0.09 TCGA-D8-A27V-01 5 137045461 137045461 G - KLHL3 Frame_Shift_Del p.Y74Tfs*18 0.11 TCGA-D8-A27V-01 5 13708232 13708232 T - DNAH5 Frame_Shift_Del p.A4447Lfs*16 0.10 TCGA-D8-A27V-01 5 137713461 137713461 A - KDM3B Frame_Shift_Del p.T177Qfs*5 0.08 TCGA-D8-A27V-01 5 13794090 13794090 A - DNAH5 Frame_Shift_Del p.F2655Lfs*5 0.08 TCGA-D8-A27V-01 5 138264962 138264962 T - CTNNA1 Frame_Shift_Del p.F643Lfs*21 0.11 TCGA-D8-A27V-01 5 139866585 139866585 C - ANKHD1 Frame_Shift_Del p.Q730Rfs*15 0.11 TCGA-D8-A27V-01 5 140023431 140023431 G - TMCO6 Frame_Shift_Del p.Q330Kfs*54 0.08 TCGA-D8-A27V-01 5 140603107 140603107 A - PCDHB14 Frame_Shift_Del p.R12Gfs*4 0.08 TCGA-D8-A27V-01 5 140792829 140792829 G - PCDHGA10 Frame_Shift_Del p.A30Lfs*14 0.09 TCGA-D8-A27V-01 5 140905634 140905634 T - DIAPH1 Frame_Shift_Del p.K1182Rfs*6 0.08 TCGA-D8-A27V-01 5 141005310 141005310 G - HDAC3 Frame_Shift_Del p.P334Qfs*33 0.10 TCGA-D8-A27V-01 5 141037990 141037990 C - ARAP3 Frame_Shift_Del p.T1157Qfs*9 0.11 TCGA-D8-A27V-01 5 141248546 141248546 T - PCDH1 Frame_Shift_Del p.N164Tfs*71 0.09 TCGA-D8-A27V-01 5 141334572 141334572 C T PCDH12 Missense_Mutation p.V949M 0.29 tolerated(0.21) benign(0.049) TCGA-D8-A27V-01 5 143587103 143587103 T - KCTD16 Frame_Shift_Del p.F276Sfs*58 0.10 TCGA-D8-A27V-01 5 14465677 14465677 C - TRIO Frame_Shift_Del p.T1899Pfs*19 0.09 TCGA-D8-A27V-01 5 145512466 145512466 A - LARS Frame_Shift_Del p.F797Lfs*5 0.08 TCGA-D8-A27V-01 5 147019219 147019219 G A JAKMIP2 Silent p.I502I 0.23 TCGA-D8-A27V-01 5 148876362 148876362 A - CSNK1A1 3'Flank 0.11 TCGA-D8-A27V-01 5 149513324 149513324 C G PDGFRB Splice_Site p.X254_splice 0.15 TCGA-D8-A27V-01 5 149755376 149755376 C G TCOF1 Silent p.V599V 0.22 TCGA-D8-A27V-01 5 149786786 149786786 C - CD74 Frame_Shift_Del p.G76Afs*6 0.09 TCGA-D8-A27V-01 5 150090830 150090830 T C DCTN4 Missense_Mutation p.K429E 0.18 tolerated(0.11) benign(0.406) TCGA-D8-A27V-01 5 150418680 150418680 T - TNIP1 Frame_Shift_Del p.K414Rfs*14 0.10 TCGA-D8-A27V-01 5 150906826 150906826 A - FAT2 Frame_Shift_Del p.F3426Sfs*23 0.09 TCGA-D8-A27V-01 5 150917389 150917389 G - FAT2 Frame_Shift_Del p.P3053Lfs*15 0.11 TCGA-D8-A27V-01 5 151239422 151239422 C - GLRA1 Frame_Shift_Del p.A134Pfs*13 0.09 TCGA-D8-A27V-01 5 153432529 153432529 T - MFAP3 Frame_Shift_Del p.F116Lfs*32 0.08 TCGA-D8-A27V-01 5 156378641 156378641 G - TIMD4 Frame_Shift_Del p.I188Lfs*13 0.13 TCGA-D8-A27V-01 5 156536040 156536040 T - HAVCR2 5'UTR 0.12 TCGA-D8-A27V-01 5 156670664 156670664 T - ITK Frame_Shift_Del p.F365Lfs*40 0.09 TCGA-D8-A27V-01 5 156787356 156787356 C - CYFIP2 Frame_Shift_Del p.R937Dfs*17 0.10 TCGA-D8-A27V-01 5 159821557 159821557 A - C5orf54 Frame_Shift_Del p.F314Sfs*7 0.09 TCGA-D8-A27V-01 5 159842198 159842198 T - SLU7 Frame_Shift_Del p.K35Rfs*5 0.08 TCGA-D8-A27V-01 5 161576203 161576203 T - GABRG2 Frame_Shift_Del p.F378Lfs*62 0.08 TCGA-D8-A27V-01 5 16465439 16465439 C - ZNF622 Frame_Shift_Del p.N113Tfs*16 0.10 TCGA-D8-A27V-01 5 16685866 16685866 G - MYO10 Frame_Shift_Del p.A1324Efs*14 0.09 TCGA-D8-A27V-01 5 167379628 167379628 C - TENM2 Frame_Shift_Del p.P251Lfs*25 0.08 TCGA-D8-A27V-01 5 167995948 167995948 A - PANK3 Frame_Shift_Del p.F28Lfs*18 0.11 TCGA-D8-A27V-01 5 168093582 168093582 C - SLIT3 Frame_Shift_Del p.Q1485Sfs*24 0.09 TCGA-D8-A27V-01 5 169504720 169504720 T - DOCK2 Frame_Shift_Del p.F1625Lfs*27 0.12 TCGA-D8-A27V-01 5 171482710 171482710 T - STK10 Frame_Shift_Del p.K803Rfs*75 0.10 TCGA-D8-A27V-01 5 171509966 171509966 T - STK10 Frame_Shift_Del p.N603Tfs*11 0.08 TCGA-D8-A27V-01 5 171532681 171532681 G - STK10 Frame_Shift_Del p.S284Vfs*31 0.08 TCGA-D8-A27V-01 5 171766791 171766791 G - SH3PXD2B Frame_Shift_Del p.L440Cfs*5 0.09 TCGA-D8-A27V-01 5 171766907 171766907 T - SH3PXD2B Frame_Shift_Del p.N401Tfs*2 0.12 TCGA-D8-A27V-01 5 175717524 175717524 G - SIMC1 Intron 0.08 TCGA-D8-A27V-01 5 175775313 175775313 G - KIAA1191 Frame_Shift_Del p.P169Lfs*87 0.08 TCGA-D8-A27V-01 5 175819835 175819835 T - CLTB Frame_Shift_Del p.D211Mfs*12 0.12 TCGA-D8-A27V-01 5 175921030 175921030 T - FAF2 Frame_Shift_Del p.L173Ffs*29 0.09 TCGA-D8-A27V-01 5 176395695 176395695 C - UIMC1 Frame_Shift_Del p.G354Efs*31 0.11 TCGA-D8-A27V-01 5 176396626 176396626 T - UIMC1 Frame_Shift_Del p.T147Pfs*66 0.09 TCGA-D8-A27V-01 5 177580720 177580720 G - NHP2 Frame_Shift_Del p.I34Sfs*22 0.12 TCGA-D8-A27V-01 5 177987685 177987685 G - COL23A1 Frame_Shift_Del p.P120Qfs*189 0.08 TCGA-D8-A27V-01 5 179263572 179263572 A - SQSTM1 Frame_Shift_Del p.K435Sfs*28 0.09 TCGA-D8-A27V-01 5 179280430 179280430 T - C5orf45 Frame_Shift_Del p.K25Rfs*35 0.09 TCGA-D8-A27V-01 5 179294845 179294845 C G TBC1D9B Silent p.L932L 0.26 TCGA-D8-A27V-01 5 179299972 179299972 C - TBC1D9B Frame_Shift_Del p.A779Pfs*13 0.10 TCGA-D8-A27V-01 5 179994114 179994114 T - CNOT6 Frame_Shift_Del p.L251Wfs*2 0.08 TCGA-D8-A27V-01 5 180166207 180166207 G C OR2Y1 Silent p.L284L 0.23 TCGA-D8-A27V-01 5 180429754 180429754 G - BTNL3 Frame_Shift_Del p.M254* 0.14 TCGA-D8-A27V-01 5 180477125 180477125 C G BTNL9 Missense_Mutation p.F164L 0.17 deleterious(0.02) possibly_damaging(0.546) TCGA-D8-A27V-01 5 1814549 1814549 G - NDUFS6 Frame_Shift_Del p.G95Afs*7 0.12 TCGA-D8-A27V-01 5 21751980 21751980 G - CDH12 Frame_Shift_Del p.L751Sfs*4 0.08 TCGA-D8-A27V-01 5 21752064 21752064 C - CDH12 Frame_Shift_Del p.E723Kfs*32 0.09 TCGA-D8-A27V-01 5 31451686 31451686 A - DROSHA Frame_Shift_Del p.L879Wfs*4 0.10 TCGA-D8-A27V-01 5 31464380 31464380 C - DROSHA Frame_Shift_Del p.G846Dfs*16 0.09 TCGA-D8-A27V-01 5 32088453 32088453 A - PDZD2 Frame_Shift_Del p.K1634Nfs*38 0.12 TCGA-D8-A27V-01 5 32406964 32406964 T - ZFR Frame_Shift_Del p.N316Ifs*4 0.09 TCGA-D8-A27V-01 5 33637785 33637785 G - ADAMTS12 Frame_Shift_Del p.C596Vfs*45 0.09 TCGA-D8-A27V-01 5 3599516 3599516 A - IRX1 Frame_Shift_Del p.N152Ifs*18 0.08 TCGA-D8-A27V-01 5 36035878 36035878 C - UGT3A2 Frame_Shift_Del p.T499Lfs*22 0.08 TCGA-D8-A27V-01 5 41055923 41055923 A - MROH2B Frame_Shift_Del p.F318Lfs*5 0.09 TCGA-D8-A27V-01 5 41794812 41794812 A - OXCT1 Frame_Shift_Del p.F380Sfs*9 0.09 TCGA-D8-A27V-01 5 41917204 41917204 C - C5orf51 Frame_Shift_Del p.P230Qfs*27 0.08 TCGA-D8-A27V-01 5 41941326 41941326 T - FBXO4 Frame_Shift_Del p.L371* 0.12 TCGA-D8-A27V-01 5 42566030 42566030 T - GHR Frame_Shift_Del p.S20Lfs*24 0.09 TCGA-D8-A27V-01 5 43291251 43291251 A - HMGCS1 Frame_Shift_Del p.S516Vfs*49 0.20 TCGA-D8-A27V-01 5 43615999 43615999 T - NNT Frame_Shift_Del p.L145* 0.10 TCGA-D8-A27V-01 5 44813267 44813267 A - MRPS30 Frame_Shift_Del p.K305Nfs*2 0.09 TCGA-D8-A27V-01 5 45645589 45645589 C G HCN1 Missense_Mutation p.D183H 0.31 deleterious(0) possibly_damaging(0.866) TCGA-D8-A27V-01 5 49695694 49695694 T - EMB Frame_Shift_Del p.N322Mfs*32 0.10 TCGA-D8-A27V-01 5 49699068 49699068 A - EMB Frame_Shift_Del p.L274* 0.10 TCGA-D8-A27V-01 5 54589954 54589954 T - DHX29 Frame_Shift_Del p.N224Ifs*4 0.10 TCGA-D8-A27V-01 5 56207302 56207302 A - SETD9 Frame_Shift_Del p.G137Vfs*72 0.09 TCGA-D8-A27V-01 5 60455781 60455781 T - SMIM15 Frame_Shift_Del p.K73Rfs*34 0.08 TCGA-D8-A27V-01 5 64920796 64920796 G C CTC-534A2.2 5'UTR 0.12 TCGA-D8-A27V-01 5 64966149 64966149 T - SGTB Frame_Shift_Del p.N280Ifs*5 0.09 TCGA-D8-A27V-01 5 66400380 66400380 A - MAST4 Frame_Shift_Del p.K445Nfs*2 0.08 TCGA-D8-A27V-01 5 67575451 67575451 A - PIK3R1 Frame_Shift_Del p.M176* 0.10 TCGA-D8-A27V-01 5 68588101 68588101 T - CCDC125 Frame_Shift_Del p.N338Mfs*7 0.08 TCGA-D8-A27V-01 5 71495716 71495716 C G MAP1B Missense_Mutation p.I2178M 0.23 possibly_damaging(0.747) TCGA-D8-A27V-01 5 74028878 74028878 A - GFM2 Frame_Shift_Del p.L519* 0.10 TCGA-D8-A27V-01 5 74091929 74091929 C - FAM169A Frame_Shift_Del p.D396Mfs*29 0.12 TCGA-D8-A27V-01 5 74137473 74137473 T - FAM169A Frame_Shift_Del p.N10Ifs*18 0.11 TCGA-D8-A27V-01 5 74518114 74518114 T - ANKRD31 Frame_Shift_Del p.N83Ifs*3 0.10 TCGA-D8-A27V-01 5 75594663 75594663 T - SV2C Frame_Shift_Del p.F517Lfs*9 0.08 TCGA-D8-A27V-01 5 76129273 76129273 A - F2RL1 Frame_Shift_Del p.R282Gfs*16 0.09 TCGA-D8-A27V-01 5 77512010 77512010 T - AP3B1 Frame_Shift_Del p.I219* 0.10 TCGA-D8-A27V-01 5 78324375 78324375 C T DMGDH Missense_Mutation p.R638K 0.16 deleterious(0.03) probably_damaging(0.983) TCGA-D8-A27V-01 5 78359539 78359539 C - DMGDH Frame_Shift_Del p.G58Afs*5 0.09 TCGA-D8-A27V-01 5 78375244 78375244 T - BHMT2 Frame_Shift_Del p.F74Lfs*17 0.07 TCGA-D8-A27V-01 5 78411653 78411653 C - BHMT Frame_Shift_Del p.L33Wfs*7 0.08 TCGA-D8-A27V-01 5 80160684 80160684 A - MSH3 Frame_Shift_Del p.N1020Ifs*40 0.09 TCGA-D8-A27V-01 5 80552762 80552762 C - CKMT2 Frame_Shift_Del p.P234Lfs*3 0.09 TCGA-D8-A27V-01 5 82837351 82837351 C - VCAN Frame_Shift_Del p.Q2845Sfs*8 0.08 TCGA-D8-A27V-01 5 83239153 83239153 C T EDIL3 3'UTR 0.23 TCGA-D8-A27V-01 5 83433076 83433076 C - EDIL3 Frame_Shift_Del p.G151Efs*52 0.08 TCGA-D8-A27V-01 5 89920965 89920965 C - GPR98 Frame_Shift_Del p.P194Lfs*5 0.10 TCGA-D8-A27V-01 5 90086750 90086750 T - GPR98 Frame_Shift_Del p.F4703Sfs*24 0.09 TCGA-D8-A27V-01 5 90087009 90087009 C - GPR98 Frame_Shift_Del p.R4789Gfs*48 0.08 TCGA-D8-A27V-01 5 9108291 9108291 C - SEMA5A Frame_Shift_Del p.I679Sfs*26 0.12 TCGA-D8-A27V-01 5 95730594 95730594 C - PCSK1 Frame_Shift_Del p.V620Wfs*32 0.09 TCGA-D8-A27V-01 5 96065318 96065318 A - CAST Frame_Shift_Del p.S107Afs*42 0.10 TCGA-D8-A27V-01 5 96112148 96112148 A - ERAP1 Frame_Shift_Del p.F926Lfs*38 0.09 TCGA-D8-A27V-01 5 96460304 96460304 A - LIX1 Frame_Shift_Del p.W38Gfs*30 0.10 TCGA-D8-A27V-01 5 98228361 98228361 T - CHD1 Frame_Shift_Del p.Y683Lfs*32 0.09 TCGA-D8-A27V-01 6 101099492 101099492 T - ASCC3 Frame_Shift_Del p.T1007Qfs*8 0.11 TCGA-D8-A27V-01 6 105726076 105726076 T - PREP Frame_Shift_Del p.V693Sfs*12 0.09 TCGA-D8-A27V-01 6 105800913 105800913 C - PREP Frame_Shift_Del p.E253Kfs*6 0.08 TCGA-D8-A27V-01 6 109468094 109468094 A - CEP57L1 Frame_Shift_Del p.N99Mfs*10 0.11 TCGA-D8-A27V-01 6 109764207 109764207 C - SMPD2 Frame_Shift_Del p.K219Rfs*10 0.09 TCGA-D8-A27V-01 6 109787185 109787185 T - ZBTB24 Frame_Shift_Del p.T655Qfs*6 0.09 TCGA-D8-A27V-01 6 111196323 111196323 T - AMD1 Frame_Shift_Del p.F7Sfs*38 0.09 TCGA-D8-A27V-01 6 111527826 111527826 A - SLC16A10 Frame_Shift_Del p.N327Ifs*30 0.08 TCGA-D8-A27V-01 6 111540077 111540077 G - SLC16A10 Frame_Shift_Del p.A384Pfs*23 0.09 TCGA-D8-A27V-01 6 111587480 111587480 T - KIAA1919 Frame_Shift_Del p.Y241Mfs*6 0.10 TCGA-D8-A27V-01 6 111643807 111643807 T - REV3L Frame_Shift_Del p.K2772Nfs*18 0.08 TCGA-D8-A27V-01 6 11185478 11185478 G - NEDD9 Frame_Shift_Del p.Q808Rfs*7 0.09 TCGA-D8-A27V-01 6 112443223 112443223 C - LAMA4 Frame_Shift_Del p.G1490Vfs*10 0.08 TCGA-D8-A27V-01 6 112670958 112670958 T - RFPL4B Frame_Shift_Del p.F18Sfs*23 0.09 TCGA-D8-A27V-01 6 114378787 114378787 T - HS3ST5 Frame_Shift_Del p.K225Nfs*5 0.09 TCGA-D8-A27V-01 6 117043336 117043336 C - KPNA5 Frame_Shift_Del p.P269Qfs*4 0.11 TCGA-D8-A27V-01 6 118028125 118028125 T - NUS1 Frame_Shift_Del p.F278Sfs*26 0.08 TCGA-D8-A27V-01 6 119215565 119215565 T - ASF1A 5'UTR 0.12 TCGA-D8-A27V-01 6 12121104 12121104 C G HIVEP1 Nonsense_Mutation p.S359* 0.47 TCGA-D8-A27V-01 6 121638709 121638709 T - TBC1D32 Frame_Shift_Del p.I143Sfs*21 0.08 TCGA-D8-A27V-01 6 126080268 126080268 T - HEY2 Frame_Shift_Del p.F112Lfs*11 0.12 TCGA-D8-A27V-01 6 126080807 126080807 A - HEY2 Frame_Shift_Del p.N292Tfs*55 0.10 TCGA-D8-A27V-01 6 126320713 126320713 A - TRMT11 Frame_Shift_Del p.V213* 0.09 TCGA-D8-A27V-01 6 127440363 127440363 T - RSPO3 Frame_Shift_Del p.F10Lfs*4 0.10 TCGA-D8-A27V-01 6 128311972 128311972 G - PTPRK Frame_Shift_Del p.T1019Sfs*3 0.10 TCGA-D8-A27V-01 6 131931244 131931244 A - MED23 Frame_Shift_Del p.F340Sfs*21 0.09 TCGA-D8-A27V-01 6 132031254 132031254 C - CTAGE9 Frame_Shift_Del p.E302Kfs*6 0.08 TCGA-D8-A27V-01 6 132032045 132032045 C - CTAGE9 Frame_Shift_Del p.G38Vfs*48 0.08 TCGA-D8-A27V-01 6 135318601 135318601 T - HBS1L Frame_Shift_Del p.I245* 0.12 TCGA-D8-A27V-01 6 135787401 135787401 T - AHI1 Frame_Shift_Del p.K100Nfs*2 0.09 TCGA-D8-A27V-01 6 136901490 136901490 C G MAP3K5 Missense_Mutation p.D1156H 0.42 deleterious(0) probably_damaging(0.999) TCGA-D8-A27V-01 6 136904791 136904791 T - MAP3K5 Frame_Shift_Del p.I1105Sfs*2 0.08 TCGA-D8-A27V-01 6 138753891 138753891 G - NHSL1 Frame_Shift_Del p.Q535Kfs*36 0.11 TCGA-D8-A27V-01 6 139097296 139097296 T - CCDC28A Frame_Shift_Del p.F104Lfs*18 0.09 TCGA-D8-A27V-01 6 143086006 143086006 T - HIVEP2 Frame_Shift_Del p.K1816Nfs*27 0.11 TCGA-D8-A27V-01 6 143094394 143094394 T - HIVEP2 Frame_Shift_Del p.K494Nfs*38 0.09 TCGA-D8-A27V-01 6 144263717 144263717 T - PLAGL1 Frame_Shift_Del p.N79Tfs*51 0.09 TCGA-D8-A27V-01 6 148865073 148865073 G A SASH1 Missense_Mutation p.E823K 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D8-A27V-01 6 149997456 149997456 A - LATS1 Frame_Shift_Del p.F941Lfs*16 0.11 TCGA-D8-A27V-01 6 150322459 150322459 C G RAET1K RNA 0.54 TCGA-D8-A27V-01 6 151672123 151672123 A - AKAP12 Frame_Shift_Del p.S868Afs*24 0.12 TCGA-D8-A27V-01 6 152332832 152332832 G C ESR1 Missense_Mutation p.E380Q 0.33 deleterious(0) probably_damaging(0.979) TCGA-D8-A27V-01 6 152497656 152497656 T - SYNE1 Frame_Shift_Del p.I7834Yfs*44 0.08 TCGA-D8-A27V-01 6 152523023 152523023 T - SYNE1 Frame_Shift_Del p.K7694Rfs*24 0.08 TCGA-D8-A27V-01 6 152539391 152539391 C - SYNE1 Splice_Site p.X7397_splice 0.09 TCGA-D8-A27V-01 6 154771288 154771288 C - CNKSR3 Frame_Shift_Del p.V53Sfs*20 0.10 TCGA-D8-A27V-01 6 15504754 15504754 T - JARID2 Frame_Shift_Del p.Y826Ifs*8 0.12 TCGA-D8-A27V-01 6 155129284 155129284 T - SCAF8 Frame_Shift_Del p.E357Nfs*10 0.09 TCGA-D8-A27V-01 6 15524650 15524650 G - DTNBP1 Intron 0.10 TCGA-D8-A27V-01 6 15533541 15533541 A - DTNBP1 Frame_Shift_Del p.F199Lfs*27 0.12 TCGA-D8-A27V-01 6 155749950 155749950 G - NOX3 Frame_Shift_Del p.Q375Rfs*19 0.11 TCGA-D8-A27V-01 6 15615504 15615504 T - DTNBP1 Frame_Shift_Del p.N161Ifs*13 0.09 TCGA-D8-A27V-01 6 157522232 157522232 C - ARID1B Frame_Shift_Del p.D1503Ifs*4 0.11 TCGA-D8-A27V-01 6 158870049 158870049 G - TULP4 Frame_Shift_Del p.Q190Rfs*2 0.13 TCGA-D8-A27V-01 6 159029423 159029423 C - TMEM181 Frame_Shift_Del p.L382Sfs*30 0.12 TCGA-D8-A27V-01 6 159401908 159401908 T - RSPH3 Frame_Shift_Del p.I395Sfs*38 0.09 TCGA-D8-A27V-01 6 160169365 160169365 A - WTAP Frame_Shift_Del p.N140Mfs*3 0.10 TCGA-D8-A27V-01 6 160494999 160494999 C - IGF2R Frame_Shift_Del p.I1722* 0.09 TCGA-D8-A27V-01 6 160500642 160500642 G - IGF2R Frame_Shift_Del p.V1838Cfs*35 0.09 TCGA-D8-A27V-01 6 161123334 161123334 A - PLG 5'UTR p.M1? 0.12 TCGA-D8-A27V-01 6 161653126 161653126 G - AGPAT4 Frame_Shift_Del p.I41Lfs*22 0.09 TCGA-D8-A27V-01 6 161781147 161781147 G - PARK2 Frame_Shift_Del p.R420Afs*15 0.09 TCGA-D8-A27V-01 6 16250569 16250569 T - GMPR Frame_Shift_Del p.F88Lfs*12 0.09 TCGA-D8-A27V-01 6 16327823 16327823 G - ATXN1 Frame_Shift_Del p.P240Hfs*37 0.09 TCGA-D8-A27V-01 6 163735909 163735909 G - PACRG Frame_Shift_Del p.D262Tfs*2 0.09 TCGA-D8-A27V-01 6 166575969 166575969 G A T Silent p.Y290Y 0.46 TCGA-D8-A27V-01 6 166833429 166833429 G - RPS6KA2 Frame_Shift_Del p.Y596Mfs*74 0.09 TCGA-D8-A27V-01 6 167754343 167754343 G - TTLL2 Frame_Shift_Del p.G319Vfs*57 0.10 TCGA-D8-A27V-01 6 167755039 167755039 C - TTLL2 Frame_Shift_Del p.Q552Kfs*23 0.11 TCGA-D8-A27V-01 6 168315952 168315952 A - MLLT4 Frame_Shift_Del p.N795Ifs*9 0.08 TCGA-D8-A27V-01 6 170876009 170876009 T - TBP Frame_Shift_Del p.F197Lfs*4 0.08 TCGA-D8-A27V-01 6 170878757 170878757 T - TBP Frame_Shift_Del p.P247Qfs*18 0.10 TCGA-D8-A27V-01 6 24709104 24709104 T - C6orf62 Frame_Shift_Del p.K155Nfs*7 0.10 TCGA-D8-A27V-01 6 24843325 24843325 T - FAM65B Frame_Shift_Del p.N562Tfs*39 0.11 TCGA-D8-A27V-01 6 25472709 25472709 C - LRRC16A Frame_Shift_Del p.H279Tfs*18 0.09 TCGA-D8-A27V-01 6 26022075 26022075 G - HIST1H4A Frame_Shift_Del p.V58Cfs*9 0.08 TCGA-D8-A27V-01 6 26123760 26123760 A - HIST1H2BC Frame_Shift_Del p.S125Pfs*33 0.10 TCGA-D8-A27V-01 6 26250525 26250525 C - HIST1H3F Frame_Shift_Del p.L104Sfs*15 0.12 TCGA-D8-A27V-01 6 26285573 26285573 T C HIST1H4H Missense_Mutation p.Y52C 0.44 deleterious(0) probably_damaging(0.962) TCGA-D8-A27V-01 6 26405755 26405755 C - BTN3A1 5'UTR 0.10 TCGA-D8-A27V-01 6 26458896 26458896 G - BTN2A1 Frame_Shift_Del p.P12Qfs*88 0.08 TCGA-D8-A27V-01 6 2680480 2680480 T - MYLK4 Frame_Shift_Del p.I245Lfs*16 0.09 TCGA-D8-A27V-01 6 2770502 2770502 T - WRNIP1 Frame_Shift_Del p.L389* 0.08 TCGA-D8-A27V-01 6 27806518 27806518 G - HIST1H2BN Frame_Shift_Del p.G27Afs*20 0.09 TCGA-D8-A27V-01 6 27925198 27925198 T - OR2B6 Frame_Shift_Del p.T64Pfs*19 0.10 TCGA-D8-A27V-01 6 30573720 30573720 A - PPP1R10 Frame_Shift_Del p.V278Gfs*112 0.09 TCGA-D8-A27V-01 6 30585636 30585636 C - MRPS18B 5'UTR 0.10 TCGA-D8-A27V-01 6 30884721 30884721 T - VARS2 Frame_Shift_Del p.F277Lfs*11 0.09 TCGA-D8-A27V-01 6 30955366 30955366 G - MUC21 Frame_Shift_Del p.G472Vfs*31 0.08 TCGA-D8-A27V-01 6 30955435 30955435 T - MUC21 Frame_Shift_Del p.F495Lfs*8 0.11 TCGA-D8-A27V-01 6 31625886 31625886 C - APOM 3'UTR 0.09 TCGA-D8-A27V-01 6 31638781 31638781 A - LY6G5B Frame_Shift_Del p.K19Rfs*15 0.08 TCGA-D8-A27V-01 6 31668773 31668773 A - ABHD16A Frame_Shift_Del p.S97Lfs*120 0.09 TCGA-D8-A27V-01 6 31760217 31760217 T - VARS Frame_Shift_Del p.K246Nfs*93 0.09 TCGA-D8-A27V-01 6 31962441 31962441 A - C4A Frame_Shift_Del p.E920Dfs*49 0.09 TCGA-D8-A27V-01 6 32084321 32084321 G - ATF6B Frame_Shift_Del p.I607Sfs*14 0.08 TCGA-D8-A27V-01 6 32187987 32187987 G - NOTCH4 Frame_Shift_Del p.L412Sfs*26 0.09 TCGA-D8-A27V-01 6 33246172 33246172 A - B3GALT4 Frame_Shift_Del p.K326Nfs*4 0.07 TCGA-D8-A27V-01 6 33654254 33654254 C - ITPR3 Frame_Shift_Del p.L1981Cfs*23 0.10 TCGA-D8-A27V-01 6 33766973 33766973 T - MLN Frame_Shift_Del p.K48Rfs*4 0.08 TCGA-D8-A27V-01 6 34738100 34738100 C - SNRPC Frame_Shift_Del p.H96Ifs*7 0.08 TCGA-D8-A27V-01 6 34835096 34835096 G - UHRF1BP1 Frame_Shift_Del p.S1171Hfs*25 0.09 TCGA-D8-A27V-01 6 35027971 35027971 G - ANKS1A Frame_Shift_Del p.L710Cfs*10 0.12 TCGA-D8-A27V-01 6 35086096 35086096 T - TCP11 Frame_Shift_Del p.T501Pfs*38 0.09 TCGA-D8-A27V-01 6 35088389 35088389 T - TCP11 Frame_Shift_Del p.A264Qfs*47 0.08 TCGA-D8-A27V-01 6 35213724 35213724 C - SCUBE3 Frame_Shift_Del p.P869Hfs*56 0.09 TCGA-D8-A27V-01 6 35289005 35289005 C - DEF6 Frame_Shift_Del p.P573Lfs*10 0.10 TCGA-D8-A27V-01 6 35378955 35378955 G - PPARD Frame_Shift_Del p.G32Dfs*73 0.09 TCGA-D8-A27V-01 6 35437285 35437285 A - RPL10A Frame_Shift_Del p.K98Nfs*19 0.09 TCGA-D8-A27V-01 6 35762911 35762911 G - CLPS 3'UTR 0.12 TCGA-D8-A27V-01 6 35855854 35855854 T - SRPK1 Frame_Shift_Del p.S113Vfs*10 0.08 TCGA-D8-A27V-01 6 36724059 36724059 T - CPNE5 Frame_Shift_Del p.K291Rfs*3 0.09 TCGA-D8-A27V-01 6 36823736 36823736 G - PPIL1 Frame_Shift_Del p.T119Pfs*18 0.12 TCGA-D8-A27V-01 6 39267128 39267128 G T KCNK17 3'UTR 0.26 TCGA-D8-A27V-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.08 TCGA-D8-A27V-01 6 4130628 4130628 T - ECI2 Frame_Shift_Del p.K160Rfs*5 0.11 TCGA-D8-A27V-01 6 42211047 42211047 T - TRERF1 Frame_Shift_Del p.K933Rfs*21 0.12 TCGA-D8-A27V-01 6 42612013 42612013 T - UBR2 Frame_Shift_Del p.Y721Ifs*29 0.08 TCGA-D8-A27V-01 6 42974321 42974321 G - PPP2R5D Frame_Shift_Del p.Q79Rfs*28 0.11 TCGA-D8-A27V-01 6 42985891 42985891 T - KLHDC3 Frame_Shift_Del p.S154Pfs*7 0.10 TCGA-D8-A27V-01 6 43156361 43156361 C - CUL9 Frame_Shift_Del p.L697Cfs*30 0.08 TCGA-D8-A27V-01 6 43250638 43250638 C - TTBK1 Frame_Shift_Del p.P721Hfs*124 0.12 TCGA-D8-A27V-01 6 43268919 43268919 A - SLC22A7 Frame_Shift_Del p.E293Rfs*27 0.08 TCGA-D8-A27V-01 6 43306740 43306740 T - ZNF318 Frame_Shift_Del p.S1666Afs*12 0.08 TCGA-D8-A27V-01 6 44107235 44107235 G A TMEM63B Missense_Mutation p.D147N 0.21 deleterious(0) possibly_damaging(0.65) TCGA-D8-A27V-01 6 46800915 46800915 G - MEP1A Frame_Shift_Del p.G418Efs*4 0.12 TCGA-D8-A27V-01 6 47846145 47846145 G - PTCHD4 Frame_Shift_Del p.P812Lfs*23 0.11 TCGA-D8-A27V-01 6 4937839 4937839 C - CDYL Frame_Shift_Del p.D331Mfs*28 0.09 TCGA-D8-A27V-01 6 49409649 49409649 T - MUT Frame_Shift_Del p.K571Rfs*13 0.09 TCGA-D8-A27V-01 6 49518504 49518504 G A C6orf141 5'UTR 0.15 TCGA-D8-A27V-01 6 50682989 50682989 C - TFAP2D Frame_Shift_Del p.P68Rfs*25 0.09 TCGA-D8-A27V-01 6 52993254 52993254 G - GCM1 Frame_Shift_Del p.P354Hfs*63 0.09 TCGA-D8-A27V-01 6 54013871 54013871 A - MLIP Frame_Shift_Del p.S211Afs*20 0.13 TCGA-D8-A27V-01 6 56362779 56362779 C G DST Missense_Mutation p.E4034Q 0.27 benign(0.032) TCGA-D8-A27V-01 6 56382416 56382416 A - DST Frame_Shift_Del p.F3421Lfs*19 0.10 TCGA-D8-A27V-01 6 56458841 56458841 C T DST Missense_Mutation p.E1493K 0.17 benign(0.341) TCGA-D8-A27V-01 6 56469569 56469569 T - DST Intron 0.08 TCGA-D8-A27V-01 6 56479244 56479244 T - DST Frame_Shift_Del p.A1120Pfs*15 0.09 TCGA-D8-A27V-01 6 56857350 56857350 C T BEND6 Nonsense_Mutation p.Q99* 0.36 TCGA-D8-A27V-01 6 57055306 57055306 T - RAB23 Frame_Shift_Del p.R223Gfs*24 0.08 TCGA-D8-A27V-01 6 6174903 6174903 A - F13A1 Frame_Shift_Del p.Y553Ifs*24 0.08 TCGA-D8-A27V-01 6 65596601 65596601 G - EYS Frame_Shift_Del p.P994Lfs*10 0.09 TCGA-D8-A27V-01 6 65655765 65655765 A - EYS Frame_Shift_Del p.C768Vfs*10 0.09 TCGA-D8-A27V-01 6 70428862 70428862 T - LMBRD1 Frame_Shift_Del p.T250Rfs*20 0.08 TCGA-D8-A27V-01 6 72892135 72892135 A - RIMS1 Frame_Shift_Del p.R323Dfs*39 0.12 TCGA-D8-A27V-01 6 7580509 7580509 A - DSP Frame_Shift_Del p.N1364Ifs*32 0.13 TCGA-D8-A27V-01 6 76018510 76018510 T - FILIP1 Frame_Shift_Del p.N1180Ifs*2 0.08 TCGA-D8-A27V-01 6 79655856 79655856 T - PHIP Frame_Shift_Del p.T1498Qfs*16 0.08 TCGA-D8-A27V-01 6 80201336 80201336 T - LCA5 Frame_Shift_Del p.N356Tfs*27 0.08 TCGA-D8-A27V-01 6 82461402 82461402 C - FAM46A Frame_Shift_Del p.E153Sfs*5 0.11 TCGA-D8-A27V-01 6 83863624 83863624 C - DOPEY1 Frame_Shift_Del p.P2085Lfs*54 0.08 TCGA-D8-A27V-01 6 8430332 8430332 T - SLC35B3 Frame_Shift_Del p.N21Ifs*11 0.10 TCGA-D8-A27V-01 6 84772665 84772665 T - MRAP2 Frame_Shift_Del p.F62Lfs*3 0.12 TCGA-D8-A27V-01 6 84870632 84870632 C T KIAA1009 Missense_Mutation p.E894K 0.38 deleterious(0.02) benign(0.253) TCGA-D8-A27V-01 6 84883828 84883828 T - KIAA1009 Frame_Shift_Del p.K702Sfs*2 0.08 TCGA-D8-A27V-01 6 86215614 86215614 A - SNX14 3'UTR 0.10 TCGA-D8-A27V-01 6 88216140 88216140 T - SLC35A1 Frame_Shift_Del p.I183Mfs*17 0.09 TCGA-D8-A27V-01 6 88224699 88224699 T - RARS2 Frame_Shift_Del p.D543Ifs*21 0.12 TCGA-D8-A27V-01 6 89895112 89895112 T - GABRR1 Frame_Shift_Del p.K238Rfs*57 0.08 TCGA-D8-A27V-01 6 89967568 89967568 T - GABRR2 Frame_Shift_Del p.I407* 0.08 TCGA-D8-A27V-01 6 89977787 89977787 C - GABRR2 Frame_Shift_Del p.D181Tfs*26 0.12 TCGA-D8-A27V-01 6 96985330 96985330 T - UFL1 Frame_Shift_Del p.L296* 0.09 TCGA-D8-A27V-01 6 99956551 99956551 T - USP45 Frame_Shift_Del p.R70Dfs*7 0.09 TCGA-D8-A27V-01 6 99993008 99993008 T - CCNC Frame_Shift_Del p.K259Nfs*33 0.12 TCGA-D8-A27V-01 7 100000166 100000166 T - ZCWPW1 Frame_Shift_Del p.I482Yfs*29 0.10 TCGA-D8-A27V-01 7 100205091 100205091 A - PCOLCE Frame_Shift_Del p.K320Sfs*20 0.09 TCGA-D8-A27V-01 7 100210849 100210849 T - MOSPD3 Frame_Shift_Del p.F80Lfs*7 0.11 TCGA-D8-A27V-01 7 100451878 100451878 C - SLC12A9 Frame_Shift_Del p.L21Sfs*34 0.10 TCGA-D8-A27V-01 7 100453351 100453351 C - SLC12A9 Frame_Shift_Del p.E115Rfs*107 0.10 TCGA-D8-A27V-01 7 100648666 100648666 C - MUC12 Frame_Shift_Del p.P4942Lfs*42 0.09 TCGA-D8-A27V-01 7 103835653 103835653 T - ORC5 Frame_Shift_Del p.K164Sfs*21 0.10 TCGA-D8-A27V-01 7 104773277 104773277 C - SRPK2 Frame_Shift_Del p.Y572Tfs*39 0.10 TCGA-D8-A27V-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.08 TCGA-D8-A27V-01 7 105248296 105248296 T - ATXN7L1 3'UTR 0.08 TCGA-D8-A27V-01 7 105254302 105254302 C - ATXN7L1 Intron 0.09 TCGA-D8-A27V-01 7 105278847 105278847 T - ATXN7L1 Frame_Shift_Del p.V386Lfs*23 0.11 TCGA-D8-A27V-01 7 105283334 105283334 T - ATXN7L1 Frame_Shift_Del p.K271Nfs*49 0.10 TCGA-D8-A27V-01 7 105908931 105908931 G A NAMPT Missense_Mutation p.S241F 0.34 deleterious(0) probably_damaging(0.984) TCGA-D8-A27V-01 7 106826907 106826907 T - HBP1 Frame_Shift_Del p.L216* 0.10 TCGA-D8-A27V-01 7 107350561 107350561 T - SLC26A4 Frame_Shift_Del p.F718Sfs*3 0.08 TCGA-D8-A27V-01 7 107571861 107571861 T - LAMB1 Frame_Shift_Del p.M1493Wfs*8 0.08 TCGA-D8-A27V-01 7 107613443 107613443 T - LAMB1 Frame_Shift_Del p.N519Tfs*17 0.09 TCGA-D8-A27V-01 7 107836262 107836262 T - NRCAM Frame_Shift_Del p.N469Tfs*6 0.08 TCGA-D8-A27V-01 7 111409654 111409654 G - DOCK4 Frame_Shift_Del p.M1245Cfs*48 0.08 TCGA-D8-A27V-01 7 111967869 111967869 A - ZNF277 Frame_Shift_Del p.K220Sfs*24 0.12 TCGA-D8-A27V-01 7 11452318 11452318 T - THSD7A Frame_Shift_Del p.N1216Tfs*11 0.11 TCGA-D8-A27V-01 7 115614246 115614246 G C TFEC Missense_Mutation p.S82C 0.18 tolerated(0.37) benign(0.004) TCGA-D8-A27V-01 7 116544270 116544270 T - CAPZA2 Frame_Shift_Del p.L88Wfs*14 0.09 TCGA-D8-A27V-01 7 116918239 116918239 G - WNT2 Frame_Shift_Del p.K352Rfs*43 0.10 TCGA-D8-A27V-01 7 117351698 117351698 T - CTTNBP2 Frame_Shift_Del p.R1629Efs*11 0.09 TCGA-D8-A27V-01 7 117424440 117424440 G - CTTNBP2 Frame_Shift_Del p.L713Ffs*48 0.13 TCGA-D8-A27V-01 7 120629712 120629712 T - CPED1 Frame_Shift_Del p.C14Afs*9 0.16 TCGA-D8-A27V-01 7 120704367 120704367 G - CPED1 Frame_Shift_Del 0.08 TCGA-D8-A27V-01 7 121513552 121513552 A - PTPRZ1 5'UTR p.M1? 0.12 TCGA-D8-A27V-01 7 121691923 121691923 A - PTPRZ1 Frame_Shift_Del p.R2062Dfs*9 0.09 TCGA-D8-A27V-01 7 121766451 121766451 A - AASS Frame_Shift_Del p.F150Lfs*10 0.10 TCGA-D8-A27V-01 7 121943282 121943282 T - FEZF1 Frame_Shift_Del p.G296Vfs*36 0.10 TCGA-D8-A27V-01 7 122027097 122027097 G - CADPS2 Frame_Shift_Del p.L1099Wfs*13 0.10 TCGA-D8-A27V-01 7 124464046 124464046 A - POT1 Frame_Shift_Del p.F625Lfs*9 0.08 TCGA-D8-A27V-01 7 127031611 127031611 T - ZNF800 Frame_Shift_Del p.M1? 0.08 TCGA-D8-A27V-01 7 127222242 127222242 G - GCC1 Frame_Shift_Del p.N719Ifs*13 0.08 TCGA-D8-A27V-01 7 127961379 127961379 T - RBM28 Frame_Shift_Del p.K501Nfs*8 0.09 TCGA-D8-A27V-01 7 128035200 128035200 G - IMPDH1 Frame_Shift_Del p.G465Efs*5 0.09 TCGA-D8-A27V-01 7 128455871 128455871 G - CCDC136 Frame_Shift_Del p.D1084Tfs*53 0.10 TCGA-D8-A27V-01 7 128526721 128526721 C - KCP RNA 0.09 TCGA-D8-A27V-01 7 129045005 129045005 A - AHCYL2 Frame_Shift_Del p.K365Nfs*24 0.09 TCGA-D8-A27V-01 7 130023264 130023264 C G CPA1 Missense_Mutation p.I172M 0.27 deleterious(0.02) possibly_damaging(0.906) TCGA-D8-A27V-01 7 131130533 131130533 A - MKLN1 Frame_Shift_Del p.N467Ifs*16 0.08 TCGA-D8-A27V-01 7 131191350 131191350 T - PODXL Frame_Shift_Del p.I413Sfs*16 0.13 TCGA-D8-A27V-01 7 134132053 134132053 A - AKR1B1 Frame_Shift_Del p.F274Lfs*8 0.13 TCGA-D8-A27V-01 7 135047802 135047802 G - CNOT4 Frame_Shift_Del p.F660Sfs*122 0.09 TCGA-D8-A27V-01 7 138262174 138262174 T - TRIM24 Frame_Shift_Del p.S700Pfs*23 0.12 TCGA-D8-A27V-01 7 139107042 139107042 G C LUC7L2 Missense_Mutation p.E445Q 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-D8-A27V-01 7 139757735 139757735 T - PARP12 Frame_Shift_Del p.Q142Hfs*74 0.09 TCGA-D8-A27V-01 7 140055549 140055549 A - SLC37A3 Frame_Shift_Del p.F179Lfs*18 0.11 TCGA-D8-A27V-01 7 140402708 140402708 C - NDUFB2 Frame_Shift_Del p.Q49Sfs*2 0.09 TCGA-D8-A27V-01 7 140482838 140482838 C T BRAF Missense_Mutation p.E433K 0.20 tolerated(0.22) benign(0.367) TCGA-D8-A27V-01 7 140549940 140549940 C - BRAF Frame_Shift_Del p.E71Sfs*19 0.09 TCGA-D8-A27V-01 7 141731556 141731556 T - MGAM Frame_Shift_Del p.H518Tfs*4 0.08 TCGA-D8-A27V-01 7 142364511 142364511 A - TRBV24-1 Frame_Shift_Del p.D49Vfs*16 0.08 TCGA-D8-A27V-01 7 142638476 142638476 G - KEL Frame_Shift_Del p.Q688Rfs*36 0.08 TCGA-D8-A27V-01 7 142960653 142960653 C - GSTK1 Frame_Shift_Del p.Y18Tfs*27 0.10 TCGA-D8-A27V-01 7 142983222 142983222 T - TMEM139 Frame_Shift_Del p.L59Wfs*41 0.10 TCGA-D8-A27V-01 7 143018544 143018544 T - CLCN1 Frame_Shift_Del p.F174Sfs*21 0.08 TCGA-D8-A27V-01 7 143140699 143140699 T - TAS2R60 Frame_Shift_Del p.L52Cfs*11 0.09 TCGA-D8-A27V-01 7 143632629 143632629 T - OR2F2 Frame_Shift_Del p.F103Sfs*15 0.10 TCGA-D8-A27V-01 7 144015494 144015494 T - OR2A1 Frame_Shift_Del p.F93Lfs*5 0.10 TCGA-D8-A27V-01 7 14620492 14620492 C - DGKB Frame_Shift_Del p.G536Efs*9 0.08 TCGA-D8-A27V-01 7 148771614 148771614 T - ZNF786 Frame_Shift_Del p.K54Nfs*4 0.10 TCGA-D8-A27V-01 7 149505664 149505664 C - SSPO RNA 0.11 TCGA-D8-A27V-01 7 150654405 150654405 G - KCNH2 Frame_Shift_Del p.H368Tfs*66 0.11 TCGA-D8-A27V-01 7 152012263 152012263 T - KMT2C Frame_Shift_Del p.M184Cfs*22 0.09 TCGA-D8-A27V-01 7 154876020 154876020 C - HTR5A Frame_Shift_Del p.F301Sfs*36 0.09 TCGA-D8-A27V-01 7 155094077 155094077 T - INSIG1 Frame_Shift_Del p.L220* 0.09 TCGA-D8-A27V-01 7 1937969 1937969 A - MAD1L1 Frame_Shift_Del p.F622Sfs*30 0.11 TCGA-D8-A27V-01 7 20782517 20782517 T - ABCB5 Frame_Shift_Del p.L1015* 0.09 TCGA-D8-A27V-01 7 21923916 21923916 G - DNAH11 Frame_Shift_Del p.E4140Kfs*29 0.11 TCGA-D8-A27V-01 7 23226723 23226723 T - NUPL2 Frame_Shift_Del p.S136Lfs*6 0.09 TCGA-D8-A27V-01 7 23226744 23226744 A - NUPL2 Frame_Shift_Del p.K143Rfs*16 0.10 TCGA-D8-A27V-01 7 23731166 23731166 T - FAM221A Frame_Shift_Del p.F197Sfs*11 0.11 TCGA-D8-A27V-01 7 2418363 2418363 G C EIF3B Missense_Mutation p.E732Q 0.28 deleterious(0) possibly_damaging(0.879) TCGA-D8-A27V-01 7 24904971 24904971 T - OSBPL3 Frame_Shift_Del p.K221Nfs*14 0.11 TCGA-D8-A27V-01 7 26236588 26236588 C - HNRNPA2B1 Frame_Shift_Del p.G117Afs*27 0.08 TCGA-D8-A27V-01 7 27282686 27282686 G - EVX1 Frame_Shift_Del p.G14Vfs*35 0.10 TCGA-D8-A27V-01 7 28758425 28758425 C - CREB5 Frame_Shift_Del p.M175Cfs*21 0.11 TCGA-D8-A27V-01 7 31015405 31015405 T - GHRHR Frame_Shift_Del p.L301Sfs*8 0.11 TCGA-D8-A27V-01 7 31855651 31855651 T - PDE1C Frame_Shift_Del p.K627Rfs*130 0.10 TCGA-D8-A27V-01 7 31876906 31876906 T - PDE1C Frame_Shift_Del p.K424Sfs*65 0.09 TCGA-D8-A27V-01 7 33644871 33644871 C - BBS9 3'UTR 0.12 TCGA-D8-A27V-01 7 34979825 34979825 C - DPY19L1 Frame_Shift_Del p.E529Sfs*11 0.10 TCGA-D8-A27V-01 7 36713550 36713550 T - AOAH Frame_Shift_Del p.K96Nfs*7 0.08 TCGA-D8-A27V-01 7 38389382 38398537 7:38389382-38398537 - TRGV4 large deletion 0.12 TCGA-D8-A27V-01 7 38766506 38766506 C T VPS41 Intron 0.22 TCGA-D8-A27V-01 7 38791836 38791836 T - VPS41 Frame_Shift_Del p.E622Dfs*32 0.08 TCGA-D8-A27V-01 7 39500217 39500217 A - POU6F2 Frame_Shift_Del p.I493Sfs*8 0.11 TCGA-D8-A27V-01 7 40134069 40134069 T - CDK13 Frame_Shift_Del p.F1344Sfs*12 0.10 TCGA-D8-A27V-01 7 4215421 4215421 A - SDK1 Frame_Shift_Del p.K1651Rfs*3 0.10 TCGA-D8-A27V-01 7 42262815 42262815 T - GLI3 Frame_Shift_Del p.K13Rfs*8 0.11 TCGA-D8-A27V-01 7 43590095 43590095 A - HECW1 Frame_Shift_Del p.N1435Tfs*10 0.10 TCGA-D8-A27V-01 7 44070485 44070485 T - RASA4CP RNA 0.11 TCGA-D8-A27V-01 7 44147037 44147037 G - AEBP1 Splice_Site p.X200_splice 0.13 TCGA-D8-A27V-01 7 44192016 44192016 C - GCK Frame_Shift_Del p.D74Tfs*14 0.10 TCGA-D8-A27V-01 7 44281896 44281896 T - CAMK2B Frame_Shift_Del p.N247Tfs*7 0.09 TCGA-D8-A27V-01 7 44431970 44431970 C - NUDCD3 Frame_Shift_Del p.E301Nfs*25 0.10 TCGA-D8-A27V-01 7 44556920 44556920 T - NPC1L1 Frame_Shift_Del p.N1085Tfs*49 0.11 TCGA-D8-A27V-01 7 45018498 45018498 G - MYO1G Frame_Shift_Del p.M22Wfs*5 0.09 TCGA-D8-A27V-01 7 45109441 45109441 T - CCM2 Frame_Shift_Del p.C231Afs*4 0.10 TCGA-D8-A27V-01 7 47440439 47440439 C - TNS3 Frame_Shift_Del p.A266Lfs*31 0.09 TCGA-D8-A27V-01 7 47913531 47913531 G - PKD1L1 Frame_Shift_Del p.R1288Afs*17 0.09 TCGA-D8-A27V-01 7 47917162 47917162 C T PKD1L1 Missense_Mutation p.M1196I 0.25 tolerated(0.11) benign(0.044) TCGA-D8-A27V-01 7 47979835 47979835 T - PKD1L1 Frame_Shift_Del p.D81Tfs*26 0.09 TCGA-D8-A27V-01 7 48308665 48308665 C G ABCA13 Silent p.L698L 0.38 TCGA-D8-A27V-01 7 50683933 50683933 A - GRB10 Frame_Shift_Del p.Y320Ifs*28 0.10 TCGA-D8-A27V-01 7 51111247 51111247 G - COBL Frame_Shift_Del p.S414Qfs*13 0.11 TCGA-D8-A27V-01 7 54636793 54636793 T - VSTM2A 3'UTR 0.10 TCGA-D8-A27V-01 7 6185198 6185198 A - USP42 Frame_Shift_Del p.N348Tfs*29 0.12 TCGA-D8-A27V-01 7 6210549 6210549 T - CYTH3 Frame_Shift_Del p.N208Tfs*14 0.09 TCGA-D8-A27V-01 7 64004131 64004131 T - ZNF680 Frame_Shift_Del p.E70Sfs*11 0.09 TCGA-D8-A27V-01 7 65439346 65439346 C - GUSB Frame_Shift_Del p.V443Sfs*2 0.08 TCGA-D8-A27V-01 7 6560234 6560234 C - GRID2IP Frame_Shift_Del p.A415Pfs*38 0.11 TCGA-D8-A27V-01 7 66237026 66237026 G - KCTD7 Frame_Shift_Del p.R47Sfs*55 0.12 TCGA-D8-A27V-01 7 6656883 6656883 C T ZNF853 Silent p.F25F 0.24 TCGA-D8-A27V-01 7 70231269 70231269 C - AUTS2 Frame_Shift_Del p.H548Tfs*46 0.10 TCGA-D8-A27V-01 7 72419080 72419080 T - POM121 3'UTR 0.09 TCGA-D8-A27V-01 7 72907202 72907202 T - BAZ1B Frame_Shift_Del p.G208Efs*17 0.09 TCGA-D8-A27V-01 7 73114750 73114750 C - STX1A Frame_Shift_Del p.G285Afs*84 0.11 TCGA-D8-A27V-01 7 73474210 73474210 T - ELN Intron 0.09 TCGA-D8-A27V-01 7 73474734 73474734 C - ELN Frame_Shift_Del p.P551Lfs*62 0.10 TCGA-D8-A27V-01 7 73666813 73666813 C - RFC2 Frame_Shift_Del p.R43Sfs*3 0.08 TCGA-D8-A27V-01 7 74303867 74303867 T - STAG3L2 RNA 0.10 TCGA-D8-A27V-01 7 75601763 75601763 A - POR Frame_Shift_Del p.K75Rfs*2 0.15 TCGA-D8-A27V-01 7 76940723 76940723 A - GSAP Frame_Shift_Del p.F839Lfs*2 0.10 TCGA-D8-A27V-01 7 78131063 78131063 C - MAGI2 Frame_Shift_Del p.E266Rfs*18 0.08 TCGA-D8-A27V-01 7 80141200 80141200 T - GNAT3 Frame_Shift_Del p.R15Dfs*20 0.08 TCGA-D8-A27V-01 7 82595120 82595120 T - PCLO Frame_Shift_Del p.K1328Nfs*33 0.08 TCGA-D8-A27V-01 7 8260918 8260918 A - ICA1 Frame_Shift_Del p.S123Lfs*32 0.09 TCGA-D8-A27V-01 7 83029420 83029420 T - SEMA3E Frame_Shift_Del p.K430Nfs*4 0.14 TCGA-D8-A27V-01 7 87037470 87037470 C - ABCB4 Frame_Shift_Del p.L1055* 0.12 TCGA-D8-A27V-01 7 87060765 87060765 T - ABCB4 Frame_Shift_Del p.E616Dfs*2 0.08 TCGA-D8-A27V-01 7 87195520 87195520 T - ABCB1 Frame_Shift_Del p.I190Lfs*16 0.09 TCGA-D8-A27V-01 7 87536900 87536900 A - DBF4 Frame_Shift_Del p.K483Nfs*51 0.09 TCGA-D8-A27V-01 7 87839397 87839397 C - SRI Frame_Shift_Del p.A100Lfs*3 0.08 TCGA-D8-A27V-01 7 90042495 90042495 T - CLDN12 Frame_Shift_Del p.S170Hfs*18 0.11 TCGA-D8-A27V-01 7 90042605 90042605 T - CLDN12 Frame_Shift_Del p.F206Sfs*34 0.10 TCGA-D8-A27V-01 7 91742975 91742975 T - CYP51A1 3'UTR 0.09 TCGA-D8-A27V-01 7 92760780 92760780 T - SAMD9L Frame_Shift_Del p.N1502Ifs*24 0.09 TCGA-D8-A27V-01 7 931927 931927 A - GET4 Frame_Shift_Del p.N208Tfs*45 0.12 TCGA-D8-A27V-01 7 97481638 97481638 T - ASNS Frame_Shift_Del p.K540Sfs*13 0.07 TCGA-D8-A27V-01 7 97984421 97984421 T - BAIAP2L1 Frame_Shift_Del p.A50Pfs*27 0.10 TCGA-D8-A27V-01 7 98497360 98497360 C - TRRAP Frame_Shift_Del p.I258Lfs*34 0.09 TCGA-D8-A27V-01 7 98508876 98508876 A - TRRAP Frame_Shift_Del p.N665Ifs*68 0.09 TCGA-D8-A27V-01 7 99091358 99091358 C - ZNF394 Frame_Shift_Del p.E494Rfs*82 0.09 TCGA-D8-A27V-01 7 99364789 99364789 T - CYP3A4 Frame_Shift_Del p.R255Gfs*2 0.11 TCGA-D8-A27V-01 7 99573583 99573583 G - AZGP1 Frame_Shift_Del p.Q21Rfs*10 0.14 TCGA-D8-A27V-01 7 99705163 99705163 G - TAF6 Frame_Shift_Del p.I618Sfs*? 0.09 TCGA-D8-A27V-01 7 99818249 99818249 C - PVRIG Frame_Shift_Del p.F184Lfs*140 0.10 TCGA-D8-A27V-01 7 99818640 99818640 C - PVRIG Frame_Shift_Del p.H251Mfs*73 0.11 TCGA-D8-A27V-01 7 99818875 99818875 G C PVRIG 3'UTR 0.33 TCGA-D8-A27V-01 7 99820248 99820248 G - GATS Intron 0.09 TCGA-D8-A27V-01 7 99909462 99909462 A - SPDYE3 Frame_Shift_Del p.K212Rfs*21 0.08 TCGA-D8-A27V-01 7 99913453 99913453 G - SPDYE3 Frame_Shift_Del p.V417Cfs*11 0.09 TCGA-D8-A27V-01 7 99936498 99936498 A - PILRB 5'UTR 0.09 TCGA-D8-A27V-01 8 100865931 100865931 T - VPS13B Frame_Shift_Del p.F3464Sfs*6 0.09 TCGA-D8-A27V-01 8 101232604 101232604 A - SPAG1 Frame_Shift_Del p.T546Qfs*5 0.09 TCGA-D8-A27V-01 8 101271197 101271197 T - RNF19A Frame_Shift_Del p.S702Afs*19 0.09 TCGA-D8-A27V-01 8 103358508 103358508 C - UBR5 Frame_Shift_Del p.G231Efs*61 0.09 TCGA-D8-A27V-01 8 103564131 103564131 C - ODF1 Frame_Shift_Del p.K60Sfs*39 0.09 TCGA-D8-A27V-01 8 10690439 10690439 T - SOX7 Frame_Shift_Del p.N62Ifs*30 0.09 TCGA-D8-A27V-01 8 107715191 107715191 A - OXR1 Frame_Shift_Del p.N247Mfs*22 0.09 TCGA-D8-A27V-01 8 108913275 108913275 C - RSPO2 3'UTR 0.11 TCGA-D8-A27V-01 8 110587734 110587734 C - SYBU Frame_Shift_Del p.A465Lfs*9 0.12 TCGA-D8-A27V-01 8 110590134 110590134 T - SYBU Frame_Shift_Del p.T283Pfs*3 0.09 TCGA-D8-A27V-01 8 113353769 113353769 T - CSMD3 Frame_Shift_Del p.T2197Pfs*39 0.08 TCGA-D8-A27V-01 8 113960086 113960086 T - CSMD3 Frame_Shift_Del p.T481Qfs*49 0.09 TCGA-D8-A27V-01 8 116426812 116426812 A - TRPS1 Frame_Shift_Del p.F1108Lfs*34 0.08 TCGA-D8-A27V-01 8 118169942 118169942 C - SLC30A8 Frame_Shift_Del p.L145Cfs*10 0.08 TCGA-D8-A27V-01 8 120744237 120744237 T - TAF2 Frame_Shift_Del p.K1176Rfs*41 0.09 TCGA-D8-A27V-01 8 121013857 121013857 A - DEPTOR Frame_Shift_Del p.K234Sfs*15 0.08 TCGA-D8-A27V-01 8 121301961 121301961 G - COL14A1 Frame_Shift_Del p.M1400Wfs*39 0.10 TCGA-D8-A27V-01 8 124658141 124658141 C - KLHL38 Frame_Shift_Del p.R529Gfs*3 0.11 TCGA-D8-A27V-01 8 125555485 125555485 G - NDUFB9 Frame_Shift_Del p.G88Afs*17 0.09 TCGA-D8-A27V-01 8 126448404 126448404 G - TRIB1 Frame_Shift_Del p.V272* 0.09 TCGA-D8-A27V-01 8 12968281 12968281 A - DLC1 Frame_Shift_Del p.L491Wfs*13 0.10 TCGA-D8-A27V-01 8 130760834 130760834 G - GSDMC Frame_Shift_Del p.R481Gfs*6 0.10 TCGA-D8-A27V-01 8 133078142 133078142 G - HHLA1 3'Flank 0.09 TCGA-D8-A27V-01 8 133645049 133645049 T - LRRC6 Frame_Shift_Del p.N197Mfs*25 0.09 TCGA-D8-A27V-01 8 133645117 133645117 T - LRRC6 Frame_Shift_Del p.D175Ifs*47 0.11 TCGA-D8-A27V-01 8 133885369 133885369 C - TG Frame_Shift_Del p.Q182Sfs*21 0.08 TCGA-D8-A27V-01 8 133911059 133911059 G C TG Missense_Mutation p.E1078D 0.16 deleterious(0.01) possibly_damaging(0.876) TCGA-D8-A27V-01 8 135812794 135812794 C T MIR30B RNA 0.41 TCGA-D8-A27V-01 8 139151232 139151232 T - FAM135B Frame_Shift_Del p.T1300Qfs*46 0.09 TCGA-D8-A27V-01 8 139620180 139620180 G - COL22A1 Frame_Shift_Del p.P1344Lfs*84 0.08 TCGA-D8-A27V-01 8 143569774 143569774 C - BAI1 Frame_Shift_Del p.M788* 0.11 TCGA-D8-A27V-01 8 143960491 143960491 C - CYP11B1 Frame_Shift_Del p.A118Pfs*15 0.08 TCGA-D8-A27V-01 8 143998577 143998577 T - CYP11B2 Frame_Shift_Del p.E98Gfs*14 0.13 TCGA-D8-A27V-01 8 145154927 145154927 G - SHARPIN Frame_Shift_Del p.P141Lfs*29 0.13 TCGA-D8-A27V-01 8 145235341 145235341 C - MROH1 Frame_Shift_Del p.F161Sfs*6 0.11 TCGA-D8-A27V-01 8 145620164 145620164 C - CPSF1 Frame_Shift_Del p.G1116Afs*25 0.14 TCGA-D8-A27V-01 8 145693135 145693135 G - KIFC2 Frame_Shift_Del p.E219Sfs*21 0.16 TCGA-D8-A27V-01 8 146003869 146003869 G - ZNF34 Frame_Shift_Del p.N18Tfs*18 0.10 TCGA-D8-A27V-01 8 17412083 17412083 T - SLC7A2 Frame_Shift_Del p.F398Sfs*6 0.09 TCGA-D8-A27V-01 8 19813424 19813424 A - LPL Frame_Shift_Del p.N284Ifs*20 0.10 TCGA-D8-A27V-01 8 21823779 21823779 G A XPO7 Intron 0.19 TCGA-D8-A27V-01 8 21861416 21861416 T - XPO7 Frame_Shift_Del p.S1017Lfs*3 0.10 TCGA-D8-A27V-01 8 21955029 21955029 C - FAM160B2 Frame_Shift_Del p.P102Qfs*79 0.09 TCGA-D8-A27V-01 8 22019350 22019350 G - SFTPC Frame_Shift_Del p.G4Afs*6 0.08 TCGA-D8-A27V-01 8 22051978 22051978 A - BMP1 Frame_Shift_Del p.K441Rfs*311 0.08 TCGA-D8-A27V-01 8 22171926 22171926 C - PIWIL2 Frame_Shift_Del p.P693Qfs*44 0.09 TCGA-D8-A27V-01 8 22426688 22426688 C - SORBS3 Frame_Shift_Del p.I446Sfs*38 0.09 TCGA-D8-A27V-01 8 22429878 22429878 C - SORBS3 Frame_Shift_Del p.Q626Rfs*104 0.09 TCGA-D8-A27V-01 8 22465503 22465503 C - CCAR2 Frame_Shift_Del p.H171Tfs*5 0.11 TCGA-D8-A27V-01 8 22972277 22972277 A - TNFRSF10C Frame_Shift_Del p.K92Nfs*12 0.09 TCGA-D8-A27V-01 8 23155605 23155605 T - LOXL2 Frame_Shift_Del p.K759Sfs*9 0.09 TCGA-D8-A27V-01 8 23159579 23159579 A - LOXL2 Frame_Shift_Del p.D699Tfs*32 0.09 TCGA-D8-A27V-01 8 25136115 25136115 C - DOCK5 Frame_Shift_Del p.L87Wfs*21 0.11 TCGA-D8-A27V-01 8 25319576 25319576 C T CDCA2 Missense_Mutation p.S80L 0.43 deleterious(0.02) possibly_damaging(0.804) TCGA-D8-A27V-01 8 27320882 27320882 G - CHRNA2 Frame_Shift_Del p.H360Tfs*20 0.11 TCGA-D8-A27V-01 8 27321090 27321090 G - CHRNA2 Frame_Shift_Del p.S291Pfs*46 0.09 TCGA-D8-A27V-01 8 27321135 27321135 G - CHRNA2 Frame_Shift_Del p.C276Afs*61 0.08 TCGA-D8-A27V-01 8 27466514 27466514 T - CLU Frame_Shift_Del p.T63Qfs*12 0.10 TCGA-D8-A27V-01 8 28385211 28385211 T - FZD3 Frame_Shift_Del p.L313* 0.08 TCGA-D8-A27V-01 8 28409261 28409261 A - FZD3 Frame_Shift_Del p.E518Rfs*2 0.08 TCGA-D8-A27V-01 8 29006146 29006146 A - KIF13B Frame_Shift_Del p.F587Lfs*12 0.08 TCGA-D8-A27V-01 8 29035055 29035055 A - KIF13B Frame_Shift_Del p.L254* 0.09 TCGA-D8-A27V-01 8 29927181 29927181 G - TMEM66 Frame_Shift_Del p.P226Qfs*48 0.13 TCGA-D8-A27V-01 8 30472143 30472143 T - GTF2E2 Frame_Shift_Del p.K116Nfs*4 0.09 TCGA-D8-A27V-01 8 30889652 30889652 A - PURG Frame_Shift_Del p.L216Wfs*14 0.08 TCGA-D8-A27V-01 8 32505769 32505769 T - NRG1 Intron 0.12 TCGA-D8-A27V-01 8 32505825 32505825 A - NRG1 Intron 0.09 TCGA-D8-A27V-01 8 33356754 33356754 T - TTI2 Frame_Shift_Del p.V489Wfs*2 0.10 TCGA-D8-A27V-01 8 3351177 3351177 C - CSMD1 Frame_Shift_Del p.K473Rfs*22 0.09 TCGA-D8-A27V-01 8 38940220 38940220 A - ADAM9 Frame_Shift_Del p.K649Sfs*43 0.09 TCGA-D8-A27V-01 8 41122923 41122923 C - SFRP1 Frame_Shift_Del p.I238Sfs*6 0.09 TCGA-D8-A27V-01 8 413032 413032 A - FBXO25 Frame_Shift_Del p.G292Vfs*7 0.09 TCGA-D8-A27V-01 8 41543733 41543733 G - ANK1 Frame_Shift_Del p.L1484Cfs*9 0.09 TCGA-D8-A27V-01 8 41791077 41791077 C - KAT6A Frame_Shift_Del p.G1554Afs*65 0.09 TCGA-D8-A27V-01 8 41791683 41791683 A - KAT6A Frame_Shift_Del p.L1352* 0.11 TCGA-D8-A27V-01 8 41800494 41800494 T - KAT6A Frame_Shift_Del p.K751Nfs*12 0.08 TCGA-D8-A27V-01 8 42302207 42302207 A - SLC20A2 Frame_Shift_Del p.F229Lfs*14 0.15 TCGA-D8-A27V-01 8 42608376 42608376 A - CHRNA6 Frame_Shift_Del p.F477Lfs*92 0.09 TCGA-D8-A27V-01 8 48874222 48874222 C - MCM4 Frame_Shift_Del p.Q74Kfs*17 0.12 TCGA-D8-A27V-01 8 48888382 48888382 G T MCM4 Nonsense_Mutation p.E825* 0.38 TCGA-D8-A27V-01 8 53038611 53038611 C - ST18 Splice_Site p.X919_splice 0.08 TCGA-D8-A27V-01 8 53071459 53071459 T - ST18 Frame_Shift_Del p.K602Rfs*5 0.08 TCGA-D8-A27V-01 8 53569163 53569163 T - RB1CC1 Frame_Shift_Del p.I1076Ffs*14 0.08 TCGA-D8-A27V-01 8 54142133 54142133 G - OPRK1 Frame_Shift_Del p.I290Ffs*29 0.10 TCGA-D8-A27V-01 8 54891684 54891684 T - TCEA1 Frame_Shift_Del p.E243Kfs*43 0.10 TCGA-D8-A27V-01 8 56435978 56435978 C - XKR4 Frame_Shift_Del p.I383Sfs*30 0.09 TCGA-D8-A27V-01 8 56663526 56663526 T - TMEM68 Frame_Shift_Del p.V229* 0.10 TCGA-D8-A27V-01 8 59410908 59410908 A - CYP7A1 Frame_Shift_Del p.F67Lfs*5 0.10 TCGA-D8-A27V-01 8 59412631 59412631 C - CYP7A1 Frame_Shift_Del p.I10Lfs*3 0.08 TCGA-D8-A27V-01 8 61764635 61764635 C - CHD7 Frame_Shift_Del p.L1909* 0.10 TCGA-D8-A27V-01 8 62475352 62475352 C - ASPH Frame_Shift_Del p.G463Dfs*4 0.09 TCGA-D8-A27V-01 8 6588232 6588232 T - AGPAT5 Frame_Shift_Del p.D98Tfs*15 0.12 TCGA-D8-A27V-01 8 66620148 66620148 A - MTFR1 Frame_Shift_Del p.K280Rfs*38 0.09 TCGA-D8-A27V-01 8 67577980 67577980 A - VCPIP1 Frame_Shift_Del p.L405Cfs*41 0.11 TCGA-D8-A27V-01 8 67974134 67974134 T - COPS5 Frame_Shift_Del p.K33Rfs*31 0.09 TCGA-D8-A27V-01 8 69143622 69143622 C - PREX2 3'UTR 0.09 TCGA-D8-A27V-01 8 71495463 71495463 A - TRAM1 Frame_Shift_Del p.Q330Rfs*5 0.09 TCGA-D8-A27V-01 8 72935206 72935206 T - TRPA1 Frame_Shift_Del p.R1099Gfs*9 0.10 TCGA-D8-A27V-01 8 72967686 72967686 C - TRPA1 Frame_Shift_Del p.G505Vfs*26 0.09 TCGA-D8-A27V-01 8 72975737 72975737 A - TRPA1 Frame_Shift_Del p.S208Qfs*9 0.08 TCGA-D8-A27V-01 8 74233199 74233199 T - RDH10 Frame_Shift_Del p.H221Mfs*4 0.09 TCGA-D8-A27V-01 8 74600987 74600987 T - STAU2 Frame_Shift_Del p.K59Rfs*12 0.11 TCGA-D8-A27V-01 8 75757430 75757430 C - PI15 Frame_Shift_Del p.Q155Rfs*9 0.10 TCGA-D8-A27V-01 8 77617161 77617161 T - ZFHX4 Frame_Shift_Del p.C280Vfs*15 0.09 TCGA-D8-A27V-01 8 77776554 77776554 C - ZFHX4 Frame_Shift_Del p.R3536Gfs*46 0.09 TCGA-D8-A27V-01 8 80831185 80831185 A - MRPS28 3'UTR 0.10 TCGA-D8-A27V-01 8 81897117 81897117 G - PAG1 Frame_Shift_Del p.P257Hfs*64 0.12 TCGA-D8-A27V-01 8 82391680 82391680 T - FABP4 Frame_Shift_Del p.K106Rfs*15 0.08 TCGA-D8-A27V-01 8 87567146 87567146 T - CPNE3 Frame_Shift_Del p.S398Lfs*4 0.09 TCGA-D8-A27V-01 8 91937808 91937808 A - NECAB1 Frame_Shift_Del p.K181Nfs*28 0.08 TCGA-D8-A27V-01 8 92082499 92082499 G - OTUD6B 5'UTR 0.11 TCGA-D8-A27V-01 8 92082597 92082597 G - OTUD6B Frame_Shift_Del p.Y27Tfs*9 0.10 TCGA-D8-A27V-01 8 92346575 92346575 T - SLC26A7 Frame_Shift_Del p.L233Yfs*4 0.09 TCGA-D8-A27V-01 8 92972559 92972559 C - RUNX1T1 Frame_Shift_Del p.A587Lfs*24 0.09 TCGA-D8-A27V-01 8 94798517 94798517 A - TMEM67 Frame_Shift_Del p.N453Mfs*3 0.09 TCGA-D8-A27V-01 8 94815850 94815850 T - TMEM67 Frame_Shift_Del p.Y755Mfs*5 0.08 TCGA-D8-A27V-01 8 95751893 95751893 T - DPY19L4 Frame_Shift_Del p.F163Sfs*24 0.08 TCGA-D8-A27V-01 8 95844267 95844267 A - INTS8 Frame_Shift_Del p.K207Nfs*2 0.10 TCGA-D8-A27V-01 8 97307384 97307384 T - PTDSS1 Frame_Shift_Del p.F168Lfs*11 0.10 TCGA-D8-A27V-01 8 97605736 97605736 T C SDC2 Missense_Mutation p.M30T 0.45 deleterious(0) possibly_damaging(0.697) TCGA-D8-A27V-01 8 99039961 99039961 C - MATN2 Frame_Shift_Del p.L755Ffs*40 0.16 TCGA-D8-A27V-01 8 99441161 99441161 G - KCNS2 Frame_Shift_Del p.A320Pfs*3 0.09 TCGA-D8-A27V-01 8 99961721 99961721 T - OSR2 Frame_Shift_Del p.F181Lfs*63 0.13 TCGA-D8-A27V-01 9 100125875 100125875 T - CCDC180 Intron 0.09 TCGA-D8-A27V-01 9 100380113 100380113 G - TSTD2 Frame_Shift_Del p.H177Mfs*115 0.09 TCGA-D8-A27V-01 9 100672415 100672415 A - C9orf156 Frame_Shift_Del p.L298Cfs*32 0.09 TCGA-D8-A27V-01 9 100672429 100672429 T - C9orf156 Frame_Shift_Del p.G294Efs*36 0.08 TCGA-D8-A27V-01 9 100892080 100892080 C - CORO2A Frame_Shift_Del p.I322Sfs*22 0.10 TCGA-D8-A27V-01 9 101594117 101594117 C T GALNT12 Silent p.F265F 0.20 TCGA-D8-A27V-01 9 102594973 102594973 A - NR4A3 Frame_Shift_Del p.T330Qfs*18 0.08 TCGA-D8-A27V-01 9 103015327 103015327 C - INVS Frame_Shift_Del p.P459Lfs*51 0.12 TCGA-D8-A27V-01 9 103072653 103072653 A - TEX10 Frame_Shift_Del p.H738Tfs*27 0.11 TCGA-D8-A27V-01 9 103090081 103090081 G - TEX10 Frame_Shift_Del p.L597Sfs*40 0.09 TCGA-D8-A27V-01 9 104187140 104187140 A - ALDOB Frame_Shift_Del p.F328Lfs*2 0.11 TCGA-D8-A27V-01 9 104309724 104309724 C - RNF20 Frame_Shift_Del p.A339Vfs*25 0.10 TCGA-D8-A27V-01 9 104390604 104390604 G - GRIN3A Frame_Shift_Del p.P811Qfs*7 0.09 TCGA-D8-A27V-01 9 107298538 107298538 G C OR13C3 Nonsense_Mutation p.S186* 0.23 TCGA-D8-A27V-01 9 107332382 107332382 T C OR13C8 Missense_Mutation p.C312R 0.21 tolerated(0.54) benign(0.001) TCGA-D8-A27V-01 9 107589314 107589314 C - ABCA1 Frame_Shift_Del p.G751Afs*77 0.09 TCGA-D8-A27V-01 9 108126902 108126902 G - SLC44A1 Frame_Shift_Del p.W385Cfs*8 0.10 TCGA-D8-A27V-01 9 109687979 109687979 C - ZNF462 Frame_Shift_Del p.P596Lfs*17 0.09 TCGA-D8-A27V-01 9 109688036 109688036 C - ZNF462 Frame_Shift_Del p.L615* 0.08 TCGA-D8-A27V-01 9 110064366 110064366 A - RAD23B Frame_Shift_Del p.N68Tfs*7 0.09 TCGA-D8-A27V-01 9 110249422 110249422 C - KLF4 Frame_Shift_Del p.G384Efs*60 0.09 TCGA-D8-A27V-01 9 111653584 111653584 G A IKBKAP Missense_Mutation p.S1020L 0.24 tolerated(0.07) benign(0.091) TCGA-D8-A27V-01 9 111741618 111741618 T - CTNNAL1 Frame_Shift_Del p.E348Dfs*13 0.08 TCGA-D8-A27V-01 9 111979377 111979377 A - EPB41L4B Frame_Shift_Del p.F486Lfs*39 0.08 TCGA-D8-A27V-01 9 112153774 112153774 T - PTPN3 Frame_Shift_Del p.N674Tfs*28 0.09 TCGA-D8-A27V-01 9 114131398 114131398 T - KIAA0368 Frame_Shift_Del p.K1855Rfs*38 0.10 TCGA-D8-A27V-01 9 115936745 115936745 T - FKBP15 Frame_Shift_Del p.K781Rfs*16 0.09 TCGA-D8-A27V-01 9 116022584 116022584 A - SLC31A1 Frame_Shift_Del p.T136Qfs*10 0.08 TCGA-D8-A27V-01 9 116171079 116171079 C - POLE3 3'UTR 0.10 TCGA-D8-A27V-01 9 116171195 116171195 T - POLE3 Frame_Shift_Del p.T114Qfs*32 0.10 TCGA-D8-A27V-01 9 116810182 116810182 A - ZNF618 Frame_Shift_Del p.N327Tfs*15 0.08 TCGA-D8-A27V-01 9 117124000 117124000 T - AKNA Frame_Shift_Del p.K703Rfs*23 0.10 TCGA-D8-A27V-01 9 117390469 117390469 C - C9orf91 Frame_Shift_Del p.L139Wfs*4 0.08 TCGA-D8-A27V-01 9 117838729 117838729 C - TNC Frame_Shift_Del p.D934Tfs*22 0.12 TCGA-D8-A27V-01 9 119106885 119106885 C T PAPPA Silent p.L1225L 0.19 TCGA-D8-A27V-01 9 119130018 119130018 C - PAPPA Frame_Shift_Del p.T1532Hfs*3 0.09 TCGA-D8-A27V-01 9 121971020 121971020 G - BRINP1 Frame_Shift_Del p.N375Tfs*55 0.09 TCGA-D8-A27V-01 9 123171474 123171474 C - CDK5RAP2 Frame_Shift_Del p.G1512Afs*11 0.09 TCGA-D8-A27V-01 9 123591420 123591420 T - PSMD5 Frame_Shift_Del p.T210Pfs*4 0.08 TCGA-D8-A27V-01 9 123671546 123671546 C - TRAF1 Frame_Shift_Del p.E332Sfs*35 0.10 TCGA-D8-A27V-01 9 124073108 124073108 C - GSN Frame_Shift_Del p.L218Wfs*21 0.08 TCGA-D8-A27V-01 9 126776288 126776288 G - LHX2 Frame_Shift_Del p.G58Afs*71 0.11 TCGA-D8-A27V-01 9 127650600 127650600 C - GOLGA1 Frame_Shift_Del p.A613Pfs*25 0.11 TCGA-D8-A27V-01 9 127662826 127662826 C - GOLGA1 Frame_Shift_Del p.V356* 0.12 TCGA-D8-A27V-01 9 128283969 128283969 C - MAPKAP1 Intron 0.09 TCGA-D8-A27V-01 9 129642475 129642475 T - ZBTB34 Frame_Shift_Del p.D263Mfs*8 0.10 TCGA-D8-A27V-01 9 130259550 130259550 G - LRSAM1 Frame_Shift_Del p.G617Afs*23 0.11 TCGA-D8-A27V-01 9 130635015 130635015 C - AK1 Frame_Shift_Del p.G54Afs*38 0.13 TCGA-D8-A27V-01 9 130648919 130648919 G - ST6GALNAC6 Frame_Shift_Del p.Q321Sfs*56 0.09 TCGA-D8-A27V-01 9 130884666 130884666 C - PTGES2 Frame_Shift_Del p.G327Afs*17 0.09 TCGA-D8-A27V-01 9 130887622 130887622 G - PTGES2 Frame_Shift_Del p.Y127Tfs*6 0.08 TCGA-D8-A27V-01 9 130982517 130982517 C - DNM1 Frame_Shift_Del p.A250Pfs*36 0.09 TCGA-D8-A27V-01 9 131038524 131038524 C T SWI5 Missense_Mutation p.P34S 0.13 tolerated_low_confidence(0.54) benign(0.005) TCGA-D8-A27V-01 9 131222859 131222859 C - ODF2 Intron 0.11 TCGA-D8-A27V-01 9 131388132 131388132 A - SPTAN1 Frame_Shift_Del p.K2052Nfs*16 0.14 TCGA-D8-A27V-01 9 131483993 131483993 G - ZDHHC12 Frame_Shift_Del p.P140Hfs*96 0.08 TCGA-D8-A27V-01 9 131696122 131696122 T - PHYHD1 Frame_Shift_Del p.F86Lfs*131 0.09 TCGA-D8-A27V-01 9 131862919 131862919 G - CRAT Frame_Shift_Del p.V286Cfs*3 0.09 TCGA-D8-A27V-01 9 132632764 132632764 G - USP20 Frame_Shift_Del p.P535Lfs*18 0.09 TCGA-D8-A27V-01 9 132719680 132719680 T - FNBP1 Frame_Shift_Del p.M158Wfs*68 0.10 TCGA-D8-A27V-01 9 133491806 133491806 G T FUBP3 Missense_Mutation p.D157Y 0.22 deleterious(0.02) benign(0.048) TCGA-D8-A27V-01 9 133506050 133506050 G - FUBP3 Frame_Shift_Del p.A386Rfs*36 0.11 TCGA-D8-A27V-01 9 134022924 134022924 A - NUP214 Frame_Shift_Del p.K665Nfs*5 0.09 TCGA-D8-A27V-01 9 134073298 134073298 T - NUP214 Frame_Shift_Del p.F1473Lfs*5 0.09 TCGA-D8-A27V-01 9 134107682 134107682 G - NUP214 Frame_Shift_Del p.S2077Qfs*66 0.09 TCGA-D8-A27V-01 9 134379615 134379615 T - POMT1 Frame_Shift_Del p.L5* 0.09 TCGA-D8-A27V-01 9 134382747 134382747 T - POMT1 Intron 0.09 TCGA-D8-A27V-01 9 135501075 135501075 A - DDX31 Frame_Shift_Del p.F668Lfs*62 0.09 TCGA-D8-A27V-01 9 135786937 135786937 G - TSC1 Frame_Shift_Del p.P311Lfs*7 0.08 TCGA-D8-A27V-01 9 136201370 136201370 T - SURF6 Frame_Shift_Del p.K54Nfs*145 0.08 TCGA-D8-A27V-01 9 136215074 136215074 T - RPL7A 5'UTR 0.09 TCGA-D8-A27V-01 9 136218975 136218975 G - SURF1 Frame_Shift_Del p.I259Lfs*9 0.14 TCGA-D8-A27V-01 9 136649449 136649449 T - VAV2 Frame_Shift_Del p.M542Cfs*27 0.08 TCGA-D8-A27V-01 9 136653495 136653495 T - VAV2 Frame_Shift_Del p.N463Tfs*19 0.09 TCGA-D8-A27V-01 9 137982163 137982163 A - OLFM1 Frame_Shift_Del p.K74Nfs*3 0.13 TCGA-D8-A27V-01 9 138671244 138671244 C - KCNT1 Frame_Shift_Del p.P924Lfs*22 0.11 TCGA-D8-A27V-01 9 139307304 139307304 T - PMPCA Frame_Shift_Del p.L133Wfs*44 0.09 TCGA-D8-A27V-01 9 139407969 139407969 G - NOTCH1 Frame_Shift_Del p.P743Lfs*29 0.10 TCGA-D8-A27V-01 9 139412704 139412704 G - NOTCH1 Frame_Shift_Del p.C381Vfs*250 0.09 TCGA-D8-A27V-01 9 139697226 139697226 G A CCDC183 Silent p.T218T 0.24 TCGA-D8-A27V-01 9 140161725 140161725 G - NELFB Frame_Shift_Del p.L426Cfs*112 0.15 TCGA-D8-A27V-01 9 140449697 140449697 C - DPH7 Frame_Shift_Del p.N452Tfs*46 0.10 TCGA-D8-A27V-01 9 140458885 140458885 C - DPH7 Splice_Site p.X317_splice 0.12 TCGA-D8-A27V-01 9 140777279 140777279 G - CACNA1B Frame_Shift_Del p.G159Afs*33 0.08 TCGA-D8-A27V-01 9 140952633 140952633 T - CACNA1B Frame_Shift_Del p.L1414* 0.13 TCGA-D8-A27V-01 9 140970334 140970334 T - CACNA1B Frame_Shift_Del p.L1642Cfs*4 0.10 TCGA-D8-A27V-01 9 15472662 15472662 T - PSIP1 Frame_Shift_Del p.K315Nfs*56 0.08 TCGA-D8-A27V-01 9 20622279 20622279 G - MLLT3 5'UTR 0.09 TCGA-D8-A27V-01 9 20758147 20758147 T - FOCAD Frame_Shift_Del p.L152Cfs*4 0.10 TCGA-D8-A27V-01 9 2081969 2081969 C - SMARCA2 Frame_Shift_Del p.Y776Ifs*25 0.08 TCGA-D8-A27V-01 9 2191404 2191404 A - SMARCA2 Frame_Shift_Del p.E1578Dfs*36 0.09 TCGA-D8-A27V-01 9 2811454 2811454 A - KIAA0020 Frame_Shift_Del p.L515Wfs*12 0.09 TCGA-D8-A27V-01 9 32457338 32457338 A - DDX58 Frame_Shift_Del p.S854Qfs*24 0.09 TCGA-D8-A27V-01 9 33255870 33255870 T - BAG1 Frame_Shift_Del p.K314Rfs*6 0.09 TCGA-D8-A27V-01 9 34249859 34249859 C - UBAP1 Frame_Shift_Del p.S455Afs*23 0.08 TCGA-D8-A27V-01 9 34514640 34514640 C - DNAI1 Frame_Shift_Del p.P575Rfs*7 0.09 TCGA-D8-A27V-01 9 34834113 34834113 T - FAM205B RNA 0.09 TCGA-D8-A27V-01 9 35059515 35059515 T - VCP Frame_Shift_Del p.N660Tfs*19 0.09 TCGA-D8-A27V-01 9 35376116 35376116 C - UNC13B Frame_Shift_Del p.P488Qfs*64 0.09 TCGA-D8-A27V-01 9 35737260 35737260 T - GBA2 Frame_Shift_Del p.K897Rfs*13 0.08 TCGA-D8-A27V-01 9 35752016 35752016 G - RGP1 Frame_Shift_Del p.G277Vfs*8 0.08 TCGA-D8-A27V-01 9 35809444 35809444 C - SPAG8 Frame_Shift_Del p.F444Lfs*12 0.09 TCGA-D8-A27V-01 9 35852904 35852904 G - TMEM8B Frame_Shift_Del p.G301Afs*3 0.11 TCGA-D8-A27V-01 9 36091235 36091235 A - RECK Frame_Shift_Del p.E327Dfs*10 0.09 TCGA-D8-A27V-01 9 36148611 36148611 G - GLIPR2 Frame_Shift_Del p.E65Rfs*102 0.08 TCGA-D8-A27V-01 9 36376000 36376000 G - RNF38 Frame_Shift_Del p.P96Lfs*60 0.10 TCGA-D8-A27V-01 9 37515966 37515966 A - FBXO10 Frame_Shift_Del p.Q878Sfs*29 0.09 TCGA-D8-A27V-01 9 43629316 43629316 G - SPATA31A6 Frame_Shift_Del p.P65Qfs*2 0.08 TCGA-D8-A27V-01 9 5774087 5774087 C - KIAA1432 Frame_Shift_Del p.R1373Gfs*64 0.12 TCGA-D8-A27V-01 9 5830726 5830726 C - ERMP1 Splice_Site p.X214_splice 0.13 TCGA-D8-A27V-01 9 6888063 6888063 G - KDM4C Frame_Shift_Del 0.08 TCGA-D8-A27V-01 9 6984256 6984256 C - KDM4C Frame_Shift_Del p.D404Tfs*17 0.11 TCGA-D8-A27V-01 9 71114246 71114246 G - PGM5 Frame_Shift_Del p.D529Ifs*13 0.10 TCGA-D8-A27V-01 9 71509429 71509429 A - PIP5K1B Frame_Shift_Del p.E217Rfs*12 0.16 TCGA-D8-A27V-01 9 75543865 75543865 T - ALDH1A1 Frame_Shift_Del p.T129Hfs*52 0.09 TCGA-D8-A27V-01 9 75773488 75773488 T C ANXA1 Missense_Mutation p.F13L 0.19 tolerated(0.4) benign(0.314) TCGA-D8-A27V-01 9 77357501 77357501 G T TRPM6 Missense_Mutation p.P1726T 0.12 deleterious(0) possibly_damaging(0.827) TCGA-D8-A27V-01 9 79323897 79323897 A - PRUNE2 Frame_Shift_Del p.L1098Cfs*21 0.11 TCGA-D8-A27V-01 9 79323934 79323934 G - PRUNE2 Frame_Shift_Del p.Q1086Nfs*33 0.09 TCGA-D8-A27V-01 9 79973312 79973312 T - VPS13A Frame_Shift_Del p.Y2666Ifs*25 0.10 TCGA-D8-A27V-01 9 80943973 80943973 A - PSAT1 Frame_Shift_Del p.K363Nfs*69 0.08 TCGA-D8-A27V-01 9 84228407 84228407 T - TLE1 Frame_Shift_Del p.K316Nfs*32 0.10 TCGA-D8-A27V-01 9 86928284 86928284 T - SLC28A3 Frame_Shift_Del p.N49Tfs*62 0.08 TCGA-D8-A27V-01 9 88257823 88257823 T - AGTPBP1 Frame_Shift_Del p.K367Nfs*10 0.09 TCGA-D8-A27V-01 9 88648224 88648224 G - GOLM1 Frame_Shift_Del p.L368Wfs*8 0.08 TCGA-D8-A27V-01 9 88918038 88918038 T - ZCCHC6 Frame_Shift_Del p.I1353Sfs*5 0.08 TCGA-D8-A27V-01 9 94172779 94172779 T - NFIL3 Frame_Shift_Del p.R80Gfs*17 0.08 TCGA-D8-A27V-01 9 96233652 96233652 T - FAM120A Frame_Shift_Del p.F236Lfs*5 0.08 TCGA-D8-A27V-01 9 96438973 96438973 C - PHF2 Frame_Shift_Del p.S978Pfs*109 0.10 TCGA-D8-A27V-01 9 97321236 97321236 T - FBP2 Frame_Shift_Del p.N335Ifs*22 0.08 TCGA-D8-A27V-01 9 97869347 97869347 C - FANCC Splice_Site p.X511_splice 0.08 TCGA-D8-A27V-01 9 97869436 97869436 G - FANCC Frame_Shift_Del p.P482Lfs*5 0.08 TCGA-D8-A27V-01 9 98278957 98278957 T - RP11-435O5.4 3'Flank 0.08 TCGA-D8-A27V-01 9 98684599 98684599 G - ERCC6L2 Frame_Shift_Del p.G449Vfs*4 0.08 TCGA-D8-A27V-01 9 99099002 99099002 A - SLC35D2 Frame_Shift_Del p.L250Wfs*5 0.09 TCGA-D8-A27V-01 9 99285875 99285875 A - CDC14B Frame_Shift_Del p.L360Wfs*2 0.10 TCGA-D8-A27V-01 9 99581918 99581918 A - ZNF782 Frame_Shift_Del p.R130Vfs*4 0.09 TCGA-D8-A27V-01 X 100098804 100098804 A - NOX1 3'UTR 0.23 TCGA-D8-A27V-01 X 100395707 100395707 T - CENPI Frame_Shift_Del p.S509Lfs*6 0.10 TCGA-D8-A27V-01 X 100531492 100531492 A - TAF7L Frame_Shift_Del p.F325Sfs*66 0.09 TCGA-D8-A27V-01 X 100612552 100612552 T - BTK Frame_Shift_Del p.K374Nfs*29 0.09 TCGA-D8-A27V-01 X 10155583 10155583 G - CLCN4 Frame_Shift_Del p.E59Sfs*15 0.10 TCGA-D8-A27V-01 X 103042840 103042840 C - PLP1 Frame_Shift_Del p.S191Afs*7 0.09 TCGA-D8-A27V-01 X 106069300 106069300 T - TBC1D8B Frame_Shift_Del p.F291Lfs*9 0.10 TCGA-D8-A27V-01 X 107975846 107975846 A - IRS4 Frame_Shift_Del p.F1243Lfs*? 0.10 TCGA-D8-A27V-01 X 107978601 107978601 A - IRS4 Frame_Shift_Del p.L325Wfs*4 0.10 TCGA-D8-A27V-01 X 108784784 108784784 T - NXT2 Frame_Shift_Del p.F118Lfs*14 0.10 TCGA-D8-A27V-01 X 109695791 109695791 T - RGAG1 Frame_Shift_Del p.S650Lfs*9 0.11 TCGA-D8-A27V-01 X 110988072 110988072 C - ALG13 Frame_Shift_Del p.P958Hfs*31 0.09 TCGA-D8-A27V-01 X 11316938 11316938 C - AMELX Frame_Shift_Del p.M154Cfs*35 0.11 TCGA-D8-A27V-01 X 114400405 114400405 T - LRCH2 Frame_Shift_Del p.D400Tfs*15 0.09 TCGA-D8-A27V-01 X 117722403 117722403 T - DOCK11 Frame_Shift_Del p.F670Sfs*12 0.09 TCGA-D8-A27V-01 X 117739287 117739287 C T DOCK11 Silent p.T883T 0.32 TCGA-D8-A27V-01 X 118767398 118767398 T - SEPT6 Frame_Shift_Del p.E339Kfs*4 0.08 TCGA-D8-A27V-01 X 119660644 119660644 T - CUL4B Frame_Shift_Del p.N905Ifs*26 0.10 TCGA-D8-A27V-01 X 12157071 12157071 G - FRMPD4 5'UTR 0.10 TCGA-D8-A27V-01 X 122765573 122765573 A - THOC2 Frame_Shift_Del p.F816Sfs*41 0.09 TCGA-D8-A27V-01 X 122766856 122766856 T - THOC2 Frame_Shift_Del p.K724Nfs*6 0.08 TCGA-D8-A27V-01 X 122767884 122767884 T - THOC2 Frame_Shift_Del p.M686Wfs*4 0.08 TCGA-D8-A27V-01 X 123205056 123205056 G - STAG2 Frame_Shift_Del p.R807Vfs*4 0.08 TCGA-D8-A27V-01 X 123504109 123504109 A - SH2D1A Frame_Shift_Del p.I96Yfs*22 0.11 TCGA-D8-A27V-01 X 128605193 128605193 T - SMARCA1 Frame_Shift_Del p.K851Nfs*33 0.08 TCGA-D8-A27V-01 X 128701252 128701252 A - OCRL Frame_Shift_Del p.A462Lfs*58 0.09 TCGA-D8-A27V-01 X 128895210 128895210 G - XPNPEP2 Frame_Shift_Del p.T522Qfs*54 0.09 TCGA-D8-A27V-01 X 12904864 12904864 A - TLR7 Frame_Shift_Del p.N413Tfs*11 0.13 TCGA-D8-A27V-01 X 129274557 129274557 T - AIFM1 Frame_Shift_Del p.K244Nfs*8 0.11 TCGA-D8-A27V-01 X 129281542 129281542 T - AIFM1 Frame_Shift_Del p.E178Nfs*56 0.08 TCGA-D8-A27V-01 X 129283513 129283513 T - AIFM1 Frame_Shift_Del p.R94Dfs*9 0.09 TCGA-D8-A27V-01 X 129349833 129349833 T - ZNF280C Frame_Shift_Del p.K590Nfs*16 0.08 TCGA-D8-A27V-01 X 129363009 129363009 G - ZNF280C Frame_Shift_Del p.T364Hfs*39 0.10 TCGA-D8-A27V-01 X 129363020 129363020 G - ZNF280C Frame_Shift_Del p.R360Gfs*43 0.15 TCGA-D8-A27V-01 X 129771278 129771278 T - ENOX2 Frame_Shift_Del p.V442Sfs*13 0.09 TCGA-D8-A27V-01 X 129799681 129799681 T - ENOX2 Frame_Shift_Del p.K346Rfs*32 0.09 TCGA-D8-A27V-01 X 131205183 131205183 T - MST4 Frame_Shift_Del p.F291Lfs*60 0.08 TCGA-D8-A27V-01 X 131212966 131212966 C - FRMD7 Frame_Shift_Del p.G360Vfs*7 0.09 TCGA-D8-A27V-01 X 132351805 132351805 T - TFDP3 Frame_Shift_Del p.K161Nfs*8 0.09 TCGA-D8-A27V-01 X 132351858 132351858 C - TFDP3 Frame_Shift_Del p.A144Pfs*14 0.08 TCGA-D8-A27V-01 X 133955554 133955554 C - FAM122C Intron 0.09 TCGA-D8-A27V-01 X 134025581 134025581 C - MOSPD1 Frame_Shift_Del p.D180Mfs*12 0.13 TCGA-D8-A27V-01 X 134185403 134185403 G - FAM127B 3'UTR 0.10 TCGA-D8-A27V-01 X 135594075 135594075 G - HTATSF1 Frame_Shift_Del p.T726Lfs*51 0.10 TCGA-D8-A27V-01 X 13781895 13781895 G - OFD1 Frame_Shift_Del p.G841Afs*28 0.09 TCGA-D8-A27V-01 X 138810984 138810984 G A ATP11C 3'UTR 0.33 TCGA-D8-A27V-01 X 138811055 138811055 T - ATP11C 3'UTR 0.09 TCGA-D8-A27V-01 X 138880855 138880855 T - ATP11C Frame_Shift_Del p.N256Ifs*20 0.10 TCGA-D8-A27V-01 X 147009859 147009859 A - FMR1 Frame_Shift_Del p.E75Sfs*7 0.09 TCGA-D8-A27V-01 X 147063034 147063034 C - FMR1NB Frame_Shift_Del p.E39Rfs*23 0.12 TCGA-D8-A27V-01 X 1471083 1471083 C - IL3RA Frame_Shift_Del p.A132Rfs*9 0.08 TCGA-D8-A27V-01 X 1471122 1471122 C - IL3RA Frame_Shift_Del p.N144Tfs*65 0.09 TCGA-D8-A27V-01 X 1471337 1471337 G - IL3RA Frame_Shift_Del p.G186Afs*23 0.08 TCGA-D8-A27V-01 X 147582625 147582625 T - AFF2 Frame_Shift_Del p.L3Hfs*55 0.09 TCGA-D8-A27V-01 X 148059901 148059901 T - AFF2 Frame_Shift_Del p.L1163Yfs*6 0.08 TCGA-D8-A27V-01 X 148072769 148072769 G - AFF2 Frame_Shift_Del p.P1283Lfs*2 0.10 TCGA-D8-A27V-01 X 148585780 148585780 G - IDS Frame_Shift_Del p.S50Pfs*10 0.12 TCGA-D8-A27V-01 X 149100840 149100840 G - CXorf40B Frame_Shift_Del p.I134Yfs*12 0.12 TCGA-D8-A27V-01 X 150345342 150345342 T - GPR50 Frame_Shift_Del p.L51Wfs*3 0.13 TCGA-D8-A27V-01 X 150348301 150348301 C - GPR50 Frame_Shift_Del p.P83Lfs*2 0.11 TCGA-D8-A27V-01 X 151815514 151815514 T - GABRQ Frame_Shift_Del p.L138Cfs*9 0.09 TCGA-D8-A27V-01 X 152684142 152684142 T - ZFP92 Frame_Shift_Del p.F16Lfs*27 0.08 TCGA-D8-A27V-01 X 152821798 152821798 G C ATP2B3 Missense_Mutation p.E750Q 0.28 deleterious(0.03) possibly_damaging(0.742) TCGA-D8-A27V-01 X 152845670 152845670 A - ATP2B3 Frame_Shift_Del p.T1193Pfs*131 0.08 TCGA-D8-A27V-01 X 152915527 152915527 A - DUSP9 Frame_Shift_Del p.K308Sfs*128 0.09 TCGA-D8-A27V-01 X 152958488 152958488 C - SLC6A8 Intron 0.09 TCGA-D8-A27V-01 X 152959414 152959414 C - SLC6A8 Frame_Shift_Del p.P400Hfs*21 0.10 TCGA-D8-A27V-01 X 153036765 153036765 T - PLXNB3 Frame_Shift_Del p.Y776Ifs*31 0.11 TCGA-D8-A27V-01 X 153055255 153055255 A - IDH3G Frame_Shift_Del p.F86Lfs*6 0.08 TCGA-D8-A27V-01 X 153132134 153132134 G - L1CAM Frame_Shift_Del p.Q801Rfs*50 0.09 TCGA-D8-A27V-01 X 153171725 153171725 C - AVPR2 Frame_Shift_Del p.G257Vfs*14 0.09 TCGA-D8-A27V-01 X 153997534 153997534 T - DKC1 Frame_Shift_Del p.L289Wfs*5 0.09 TCGA-D8-A27V-01 X 153999106 153999106 A - DKC1 Frame_Shift_Del p.N330Ifs*20 0.08 TCGA-D8-A27V-01 X 154019326 154019326 C - MPP1 Frame_Shift_Del p.D115Mfs*4 0.08 TCGA-D8-A27V-01 X 154132218 154132218 T - F8 Frame_Shift_Del p.E1988Rfs*42 0.09 TCGA-D8-A27V-01 X 154158195 154158195 T - F8 Frame_Shift_Del p.E1292Rfs*16 0.09 TCGA-D8-A27V-01 X 154194774 154194774 T - F8 Frame_Shift_Del p.T400Lfs*18 0.12 TCGA-D8-A27V-01 X 154227786 154227786 A - F8 Frame_Shift_Del p.F78Sfs*14 0.08 TCGA-D8-A27V-01 X 155119178 155119178 A - VAMP7 Frame_Shift_Del p.K17Nfs*12 0.10 TCGA-D8-A27V-01 X 155231123 155231123 T - IL9R Intron 0.09 TCGA-D8-A27V-01 X 18631361 18631361 A - CDKL5 Frame_Shift_Del p.N748Tfs*36 0.10 TCGA-D8-A27V-01 X 18969350 18969350 T - PHKA2 Frame_Shift_Del p.K109Rfs*40 0.09 TCGA-D8-A27V-01 X 19984260 19984260 T - CXorf23 Frame_Shift_Del p.K183Nfs*136 0.10 TCGA-D8-A27V-01 X 20043074 20043074 T - MAP7D2 Frame_Shift_Del p.D470Ifs*8 0.17 TCGA-D8-A27V-01 X 20174266 20174266 T - RPS6KA3 Frame_Shift_Del p.Q687Hfs*4 0.08 TCGA-D8-A27V-01 X 21886659 21886659 T - MBTPS2 Frame_Shift_Del p.Y250Tfs*48 0.13 TCGA-D8-A27V-01 X 23411728 23411728 C - PTCHD1 Frame_Shift_Del p.L700Cfs*23 0.09 TCGA-D8-A27V-01 X 2343265 2343265 C - DHRSX Frame_Shift_Del p.A64Rfs*9 0.08 TCGA-D8-A27V-01 X 23801821 23801821 A - SAT1 Frame_Shift_Del p.D40Ifs*3 0.12 TCGA-D8-A27V-01 X 23897082 23897082 T - APOO Frame_Shift_Del p.S63Afs*35 0.10 TCGA-D8-A27V-01 X 24091308 24091308 T - EIF2S3 Frame_Shift_Del p.L429* 0.10 TCGA-D8-A27V-01 X 24593388 24593388 T - PCYT1B Frame_Shift_Del p.V253Sfs*12 0.09 TCGA-D8-A27V-01 X 26212886 26212886 G - MAGEB6 Frame_Shift_Del p.E309Sfs*62 0.10 TCGA-D8-A27V-01 X 2640697 2640697 G - CD99 Frame_Shift_Del p.G98Afs*29 0.09 TCGA-D8-A27V-01 X 2826799 2826799 C - ARSD Frame_Shift_Del p.Q462Sfs*47 0.09 TCGA-D8-A27V-01 X 3007562 3007562 T - ARSF Frame_Shift_Del p.F287Sfs*48 0.09 TCGA-D8-A27V-01 X 30852234 30852234 G - TAB3 Frame_Shift_Del p.R642Efs*5 0.10 TCGA-D8-A27V-01 X 31525504 31525504 T - DMD Frame_Shift_Del p.I2762Sfs*2 0.10 TCGA-D8-A27V-01 X 322167 322167 G - PPP2R3B Frame_Shift_Del p.M162Wfs*61 0.09 TCGA-D8-A27V-01 X 322197 322197 G - PPP2R3B Frame_Shift_Del p.F152Sfs*71 0.17 TCGA-D8-A27V-01 X 33357391 33357391 T - DMD 5'UTR 0.10 TCGA-D8-A27V-01 X 35820704 35820704 A - MAGEB16 Frame_Shift_Del p.K132Sfs*3 0.10 TCGA-D8-A27V-01 X 38260622 38260622 A - OTC Frame_Shift_Del p.N161Mfs*26 0.08 TCGA-D8-A27V-01 X 39922212 39922212 T - BCOR Frame_Shift_Del p.K1320Nfs*49 0.09 TCGA-D8-A27V-01 X 41203492 41203492 T - DDX3X Frame_Shift_Del p.S290Hfs*31 0.09 TCGA-D8-A27V-01 X 41205487 41205487 G C DDX3X Missense_Mutation p.D441H 0.21 deleterious(0.02) benign(0.418) TCGA-D8-A27V-01 X 41401961 41401961 A - CASK Frame_Shift_Del p.L713Wfs*14 0.08 TCGA-D8-A27V-01 X 44703340 44703340 C - DUSP21 5'UTR 0.15 TCGA-D8-A27V-01 X 46736960 46736960 T - RP2 Frame_Shift_Del p.F302Lfs*7 0.09 TCGA-D8-A27V-01 X 47083052 47083052 C - CDK16 Frame_Shift_Del p.L107Wfs*42 0.12 TCGA-D8-A27V-01 X 47099263 47099263 G - USP11 Frame_Shift_Del p.G208Afs*16 0.08 TCGA-D8-A27V-01 X 47272565 47272565 A - ZNF157 Frame_Shift_Del p.K365Nfs*33 0.13 TCGA-D8-A27V-01 X 47307606 47307606 T - ZNF41 Frame_Shift_Del p.K521Nfs*74 0.10 TCGA-D8-A27V-01 X 47466574 47466574 T - SYN1 Frame_Shift_Del p.K134Rfs*10 0.08 TCGA-D8-A27V-01 X 47705571 47705571 G A ZNF81 5'UTR 0.28 TCGA-D8-A27V-01 X 48164265 48164265 G - SSX9 RNA 0.08 TCGA-D8-A27V-01 X 48337080 48337080 G - FTSJ1 Frame_Shift_Del p.D91Tfs*22 0.22 TCGA-D8-A27V-01 X 48382327 48382327 C - EBP Frame_Shift_Del p.P57Hfs*22 0.10 TCGA-D8-A27V-01 X 48386733 48386733 C - EBP Frame_Shift_Del p.L195Cfs*14 0.08 TCGA-D8-A27V-01 X 48543994 48543994 C - WAS Frame_Shift_Del p.F113Sfs*14 0.10 TCGA-D8-A27V-01 X 48791759 48791759 C - OTUD5 Frame_Shift_Del p.G351Afs*14 0.12 TCGA-D8-A27V-01 X 48834673 48834673 G - GRIPAP1 Intron 0.10 TCGA-D8-A27V-01 X 48838230 48838230 C - GRIPAP1 Frame_Shift_Del p.E552Sfs*7 0.14 TCGA-D8-A27V-01 X 48976103 48976103 C - GPKOW Frame_Shift_Del p.G174Afs*17 0.10 TCGA-D8-A27V-01 X 49049783 49049783 C - SYP Frame_Shift_Del p.N188Tfs*6 0.12 TCGA-D8-A27V-01 X 49055479 49055479 C - SYP Frame_Shift_Del p.G17Vfs*13 0.08 TCGA-D8-A27V-01 X 49065766 49065766 C T CACNA1F Missense_Mutation p.E1648K 0.24 tolerated(0.44) benign(0.001) TCGA-D8-A27V-01 X 49079411 49079411 G - CACNA1F Frame_Shift_Del p.Q699Rfs*10 0.09 TCGA-D8-A27V-01 X 49089819 49089819 C - CACNA1F 5'UTR 0.09 TCGA-D8-A27V-01 X 49098494 49098494 C - CCDC22 Frame_Shift_Del p.L82Wfs*93 0.10 TCGA-D8-A27V-01 X 49113961 49113961 G - FOXP3 Frame_Shift_Del p.P126Qfs*3 0.12 TCGA-D8-A27V-01 X 49774413 49774413 C - CLCN5 Intron 0.09 TCGA-D8-A27V-01 X 49837200 49837200 T - CLCN5 Frame_Shift_Del p.S126Pfs*5 0.08 TCGA-D8-A27V-01 X 50028182 50028182 C - CCNB3 Frame_Shift_Del p.Q8Rfs*79 0.09 TCGA-D8-A27V-01 X 51151044 51151044 C - CXorf67 Frame_Shift_Del p.P393Qfs*54 0.09 TCGA-D8-A27V-01 X 51641687 51641687 C - MAGED1 Frame_Shift_Del p.L655Sfs*5 0.09 TCGA-D8-A27V-01 X 53115201 53115201 T - TSPYL2 Frame_Shift_Del p.F543Sfs*81 0.10 TCGA-D8-A27V-01 X 53430524 53430524 T - SMC1A Frame_Shift_Del p.K798Nfs*31 0.11 TCGA-D8-A27V-01 X 53616679 53616679 G - HUWE1 Frame_Shift_Del p.P1430Rfs*35 0.09 TCGA-D8-A27V-01 X 54259294 54259294 A - WNK3 Frame_Shift_Del p.R1597Efs*7 0.09 TCGA-D8-A27V-01 X 54481888 54481888 G - FGD1 Frame_Shift_Del p.Q670Rfs*20 0.17 TCGA-D8-A27V-01 X 54569694 54569694 G - GNL3L Frame_Shift_Del p.G149Afs*24 0.08 TCGA-D8-A27V-01 X 55248272 55248272 G - PAGE5 Frame_Shift_Del p.E73Rfs*27 0.11 TCGA-D8-A27V-01 X 63005907 63005907 T - MIR1468 RNA 0.16 TCGA-D8-A27V-01 X 63413021 63413021 G - AMER1 Frame_Shift_Del p.P49Qfs*4 0.08 TCGA-D8-A27V-01 X 65480010 65480010 G - HEPH Frame_Shift_Del p.A1090Pfs*8 0.12 TCGA-D8-A27V-01 X 68749550 68749550 T - FAM155B Frame_Shift_Del p.F391Sfs*74 0.08 TCGA-D8-A27V-01 X 69497632 69497632 A - ARR3 Frame_Shift_Del p.I228Sfs*16 0.08 TCGA-D8-A27V-01 X 69652921 69652921 T - GDPD2 Frame_Shift_Del p.F587Sfs*2 0.10 TCGA-D8-A27V-01 X 70328186 70328186 G - IL2RG Frame_Shift_Del p.R289Efs*5 0.10 TCGA-D8-A27V-01 X 70341641 70341641 T - MED12 Frame_Shift_Del p.F360Lfs*24 0.10 TCGA-D8-A27V-01 X 70351461 70351461 C - MED12 Frame_Shift_Del p.P1371Lfs*5 0.08 TCGA-D8-A27V-01 X 70367828 70367828 C - NLGN3 Frame_Shift_Del p.P78Rfs*67 0.09 TCGA-D8-A27V-01 X 70464198 70464198 T - ZMYM3 Frame_Shift_Del p.K1078Nfs*42 0.08 TCGA-D8-A27V-01 X 71801015 71801015 C - PHKA1 Frame_Shift_Del p.G1170Afs*31 0.11 TCGA-D8-A27V-01 X 73745625 73745625 C - SLC16A2 Frame_Shift_Del p.W357Gfs*43 0.08 TCGA-D8-A27V-01 X 74517425 74517425 T - UPRT Intron 0.09 TCGA-D8-A27V-01 X 74636972 74636972 G - ZDHHC15 Frame_Shift_Del p.P306Hfs*3 0.09 TCGA-D8-A27V-01 X 75397568 75397568 A - PBDC1 Frame_Shift_Del p.R178Efs*93 0.11 TCGA-D8-A27V-01 X 76709693 76709693 G - FGF16 Frame_Shift_Del p.G17Efs*8 0.09 TCGA-D8-A27V-01 X 76920173 76920173 T - ATRX Frame_Shift_Del p.R1302Efs*44 0.09 TCGA-D8-A27V-01 X 77266958 77266958 T - ATP7A Frame_Shift_Del p.V656* 0.10 TCGA-D8-A27V-01 X 79286184 79286184 T - TBX22 Frame_Shift_Del p.W381Gfs*14 0.09 TCGA-D8-A27V-01 X 79955483 79955483 T - BRWD3 Frame_Shift_Del p.K972Nfs*18 0.09 TCGA-D8-A27V-01 X 8434064 8434064 G A VCX3B Silent p.E127E 0.22 TCGA-D8-A27V-01 X 84363667 84363667 C - SATL1 Frame_Shift_Del p.G103Afs*2 0.08 TCGA-D8-A27V-01 X 84561293 84561293 T - POF1B Frame_Shift_Del p.N404Tfs*16 0.10 TCGA-D8-A27V-01 X 85969583 85969583 C - DACH2 Frame_Shift_Del p.L323Yfs*15 0.08 TCGA-D8-A27V-01 X 91090829 91090829 A - PCDH11X Frame_Shift_Del p.V110Wfs*19 0.08 TCGA-D8-A27V-01 X 99955966 99955966 G - SYTL4 Frame_Shift_Del p.L156Sfs*33 0.09 TCGA-D8-A27W-01 10 30336682 30336683 - G KIAA1462 Frame_Shift_Ins p.A21Sfs*6 0.24 TCGA-D8-A27W-01 10 70775927 70775927 C T KIAA1279 Missense_Mutation p.R541C 0.09 deleterious(0) probably_damaging(1) TCGA-D8-A27W-01 10 71964651 71964651 A T PPA1 Silent p.S272S 0.08 TCGA-D8-A27W-01 10 82098231 82098231 A G DYDC1 Missense_Mutation p.F166L 0.08 tolerated(1) benign(0) TCGA-D8-A27W-01 10 90700995 90700995 C T ACTA2 Missense_Mutation p.V203I 0.08 deleterious_low_confidence(0.04) benign(0.025) TCGA-D8-A27W-01 11 70507831 70507831 C G SHANK2 Intron 0.32 TCGA-D8-A27W-01 12 45686673 45686673 G A ANO6 Intron 0.22 TCGA-D8-A27W-01 13 103385889 103385889 T C CCDC168 Missense_Mutation p.N1091D 0.07 tolerated(0.19) unknown(0) TCGA-D8-A27W-01 13 108862785 108862785 G A LIG4 Missense_Mutation p.R278C 0.10 deleterious(0) probably_damaging(1) TCGA-D8-A27W-01 13 110845223 110845223 G A COL4A1 Silent p.D473D 0.08 TCGA-D8-A27W-01 14 22192399 22192399 C A TRAV3 Nonsense_Mutation p.Y58* 0.06 TCGA-D8-A27W-01 14 24527187 24527187 G A LRRC16B Silent p.P412P 0.15 TCGA-D8-A27W-01 14 55817206 55817206 T C FBXO34 Missense_Mutation p.V33A 0.10 tolerated(1) benign(0.002) TCGA-D8-A27W-01 15 22963798 22963798 G A CYFIP1 Missense_Mutation p.R771H 0.07 deleterious(0) probably_damaging(0.944) TCGA-D8-A27W-01 15 48052559 48052559 G A SEMA6D Silent p.R56R 0.27 TCGA-D8-A27W-01 16 3591705 3591705 C T NLRC3 3'UTR 0.22 TCGA-D8-A27W-01 16 7382995 7382995 C T RBFOX1 5'UTR 0.18 TCGA-D8-A27W-01 17 38610201 38610201 G A IGFBP4 Missense_Mutation p.E177K 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-D8-A27W-01 19 49900954 49900954 C T CCDC155 Silent p.G149G 0.09 TCGA-D8-A27W-01 1 151505004 151505004 G A CGN Missense_Mutation p.E900K 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A27W-01 1 221057756 221057756 C T HLX Missense_Mutation p.R393W 0.08 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-D8-A27W-01 1 27106354 27106354 C T ARID1A Nonsense_Mutation p.R1989* 0.11 TCGA-D8-A27W-01 1 77528749 77528749 G A ST6GALNAC5 Missense_Mutation p.R290H 0.14 probably_damaging(0.975) TCGA-D8-A27W-01 20 51872712 51872712 C T TSHZ2 Silent p.Y905Y 0.42 TCGA-D8-A27W-01 22 24582101 24582101 G A SUSD2 Missense_Mutation p.R486Q 0.18 deleterious(0) probably_damaging(0.984) TCGA-D8-A27W-01 22 37964207 37964207 G A CDC42EP1 Missense_Mutation p.G186R 0.12 tolerated(0.07) probably_damaging(0.98) TCGA-D8-A27W-01 2 166806250 166806250 G T TTC21B Intron 0.20 TCGA-D8-A27W-01 2 183822287 183822287 G A NCKAP1 Missense_Mutation p.A646V 0.06 tolerated(0.23) possibly_damaging(0.882) TCGA-D8-A27W-01 2 231222649 231222649 C T SP140L Silent p.R79R 0.19 TCGA-D8-A27W-01 2 9467980 9467980 A G ASAP2 Missense_Mutation p.K209R 0.10 deleterious(0.03) possibly_damaging(0.761) TCGA-D8-A27W-01 3 133099898 133099898 C A TMEM108 Missense_Mutation p.S448Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-D8-A27W-01 3 146171892 146171892 G A PLSCR2 Missense_Mutation p.P200L 0.19 tolerated(0.19) benign(0.16) TCGA-D8-A27W-01 3 152018145 152018145 G A MBNL1 Missense_Mutation p.D55N 0.12 deleterious(0.02) benign(0.358) TCGA-D8-A27W-01 3 156249278 156249278 G A KCNAB1 Missense_Mutation p.A388T 0.30 deleterious(0) probably_damaging(0.964) TCGA-D8-A27W-01 3 170819278 170819278 G A TNIK Missense_Mutation p.H851Y 0.07 deleterious(0.03) possibly_damaging(0.544) TCGA-D8-A27W-01 4 147561811 147561811 G A POU4F2 Missense_Mutation p.E361K 0.19 deleterious(0) benign(0.109) TCGA-D8-A27W-01 4 186111736 186111736 C A KIAA1430 Missense_Mutation p.K205N 0.10 tolerated(0.32) unknown(0) TCGA-D8-A27W-01 4 26491823 26491823 C G CCKAR Missense_Mutation p.E23Q 0.12 tolerated(0.14) benign(0.03) TCGA-D8-A27W-01 4 437075 437075 C T ZNF721 Missense_Mutation p.C394Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-D8-A27W-01 5 140957049 140957049 C A DIAPH1 Nonsense_Mutation p.E425* 0.08 TCGA-D8-A27W-01 5 154396151 154396151 A G KIF4B Missense_Mutation p.E911G 0.31 deleterious(0.04) benign(0.008) TCGA-D8-A27W-01 5 179563506 179563506 G A RASGEF1C Missense_Mutation p.R104W 0.27 deleterious(0) possibly_damaging(0.832) TCGA-D8-A27W-01 6 126669611 126669611 G A CENPW Splice_Site p.X81_splice 0.32 TCGA-D8-A27W-01 6 25450164 25450164 G A LRRC16A Missense_Mutation p.R137H 0.32 deleterious(0.01) possibly_damaging(0.708) TCGA-D8-A27W-01 6 26197399 26197399 C G HIST1H3D Missense_Mutation p.R27P 0.10 deleterious_low_confidence(0.01) benign(0.015) TCGA-D8-A27W-01 6 2689172 2689172 G A MYLK4 Missense_Mutation p.P85L 0.11 deleterious(0.02) benign(0.018) TCGA-D8-A27W-01 6 37620076 37620076 G C MDGA1 Missense_Mutation p.I341M 0.88 tolerated(0.09) probably_damaging(0.991) TCGA-D8-A27W-01 7 37953987 37953987 G A SFRP4 Missense_Mutation p.R172C 0.10 tolerated(0.11) benign(0.109) TCGA-D8-A27W-01 7 7680043 7680043 C T RPA3 Missense_Mutation p.D3N 0.30 deleterious(0.04) benign(0.361) TCGA-D8-A27W-01 7 8790657 8790657 C T NXPH1 Missense_Mutation p.T25M 0.16 tolerated(0.12) benign(0.003) TCGA-D8-A27W-01 8 92053073 92053073 G A TMEM55A 5'UTR 0.23 TCGA-D8-A27W-01 9 100418319 100418319 A G NCBP1 Missense_Mutation p.E442G 0.08 tolerated(0.48) benign(0.012) TCGA-D8-A27W-01 9 111938886 111938886 C T EPB41L4B Missense_Mutation p.V860I 0.11 tolerated_low_confidence(0.61) benign(0.004) TCGA-D8-A27W-01 9 136597723 136597723 C A SARDH Missense_Mutation p.G111V 0.12 deleterious(0) probably_damaging(1) TCGA-D8-A27W-01 9 88272487 88272487 G A AGTPBP1 Missense_Mutation p.R258C 0.24 deleterious(0.02) probably_damaging(0.961) TCGA-D8-A27W-01 X 73960046 73960046 C T KIAA2022 Missense_Mutation p.R1449H 0.28 deleterious(0) probably_damaging(1) TCGA-D8-A3Z6-01 10 113923490 113923490 C T GPAM Silent p.L464L 0.41 TCGA-D8-A3Z6-01 11 118499208 118499208 T C PHLDB1 Missense_Mutation p.C557R 0.13 tolerated(1) benign(0) TCGA-D8-A3Z6-01 11 30946866 30946866 C G DCDC1 Missense_Mutation p.R996T 0.35 deleterious(0) benign(0.402) TCGA-D8-A3Z6-01 11 563307 563307 C G RASSF7 Missense_Mutation p.P314R 0.28 deleterious(0.05) benign(0.216) TCGA-D8-A3Z6-01 11 57182167 57182167 G A SLC43A3 Silent p.F327F 0.28 TCGA-D8-A3Z6-01 11 65272285 65272285 A T MALAT1 RNA 0.36 TCGA-D8-A3Z6-01 11 8752457 8752457 C T ST5 Missense_Mutation p.G127E 0.17 tolerated_low_confidence(0.1) benign(0.351) TCGA-D8-A3Z6-01 12 100711639 100711639 A G SCYL2 Missense_Mutation p.E444G 0.41 tolerated(0.06) benign(0.269) TCGA-D8-A3Z6-01 14 105420425 105420425 G T AHNAK2 Missense_Mutation p.L455M 0.40 possibly_damaging(0.904) TCGA-D8-A3Z6-01 14 24620062 24620062 C T RNF31 Missense_Mutation p.R485W 0.41 deleterious(0) possibly_damaging(0.832) TCGA-D8-A3Z6-01 16 11792024 11792024 A C TXNDC11 Missense_Mutation p.I355R 0.09 deleterious(0) possibly_damaging(0.851) TCGA-D8-A3Z6-01 16 13329127 13329127 G A SHISA9 Missense_Mutation p.R379Q 0.47 tolerated(0.06) probably_damaging(0.984) TCGA-D8-A3Z6-01 16 68847369 68847370 AA - CDH1 Frame_Shift_Del p.N431Qfs*14 0.34 TCGA-D8-A3Z6-01 18 72999964 72999964 G A TSHZ1 Missense_Mutation p.D823N 0.22 deleterious(0) probably_damaging(0.945) TCGA-D8-A3Z6-01 19 11959677 11959677 T C ZNF439 5'UTR 0.42 TCGA-D8-A3Z6-01 19 41903250 41903250 G A EXOSC5 5'UTR 0.40 TCGA-D8-A3Z6-01 19 48282019 48282019 C T SEPW1 5'UTR 0.44 TCGA-D8-A3Z6-01 19 5621340 5621340 G A SAFB2 Missense_Mutation p.S85L 0.29 deleterious(0.04) benign(0.004) TCGA-D8-A3Z6-01 1 149576695 149576695 T C RP11-277L2.3 RNA 0.31 TCGA-D8-A3Z6-01 1 160970906 160970908 ACA - F11R In_Frame_Del p.L48del 0.12 TCGA-D8-A3Z6-01 1 24113958 24113958 T A PITHD1 3'UTR 0.26 TCGA-D8-A3Z6-01 1 245016504 245016504 G A HNRNPU 3'Flank 0.21 TCGA-D8-A3Z6-01 1 27732162 27732162 G A WASF2 3'UTR 0.21 TCGA-D8-A3Z6-01 20 57561249 57561249 C - NELFCD Frame_Shift_Del p.F72Lfs*4 0.12 TCGA-D8-A3Z6-01 20 61834861 61834861 C T YTHDF1 Missense_Mutation p.S144N 0.18 tolerated(0.13) benign(0.005) TCGA-D8-A3Z6-01 2 113940602 113940602 C T PSD4 Missense_Mutation p.T190M 0.07 tolerated_low_confidence(0.06) benign(0.391) TCGA-D8-A3Z6-01 2 97530574 97530574 G A SEMA4C Missense_Mutation p.T277M 0.08 deleterious(0) probably_damaging(0.991) TCGA-D8-A3Z6-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.35 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A3Z6-01 3 42730496 42730496 C T KLHL40 Silent p.T519T 0.29 TCGA-D8-A3Z6-01 3 8675446 8675446 G A SSUH2 Missense_Mutation p.A82V 0.13 deleterious(0) possibly_damaging(0.907) TCGA-D8-A3Z6-01 5 1266600 1266600 G T TERT Missense_Mutation p.T878N 0.19 tolerated(0.21) benign(0.285) TCGA-D8-A3Z6-01 5 139007088 139007090 TAA - UBE2D2 3'UTR 0.22 TCGA-D8-A3Z6-01 5 140182226 140182226 G A PCDHA3 Missense_Mutation p.A482T 0.25 deleterious_low_confidence(0.02) benign(0.396) TCGA-D8-A3Z6-01 5 140773952 140773952 G T PCDHGA8 Missense_Mutation p.Q524H 0.39 tolerated_low_confidence(0.05) benign(0.399) TCGA-D8-A3Z6-01 5 191707 191707 C A LRRC14B Missense_Mutation p.H18Q 0.31 tolerated(0.23) benign(0.025) TCGA-D8-A3Z6-01 5 56161268 56161269 TT - MAP3K1 Frame_Shift_Del p.L380Kfs*4 0.27 TCGA-D8-A3Z6-01 5 88017231 88017231 A C MEF2C 3'UTR 0.22 TCGA-D8-A3Z6-01 6 27791945 27791945 G A HIST1H4J Missense_Mutation p.G15S 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-D8-A3Z6-01 8 442323 442323 C T TDRP Intron 0.25 TCGA-D8-A3Z6-01 X 102471487 102471487 C A BEX4 3'UTR 0.32 TCGA-D8-A3Z6-01 X 57021934 57021934 C T SPIN3 5'UTR 0.44 TCGA-D8-A3Z6-01 X 70345260 70345260 G A MED12 Silent p.K762K 0.45 TCGA-D8-A4Z1-01 10 103530308 103530308 C G FGF8 Missense_Mutation p.Q171H 0.08 deleterious(0.03) probably_damaging(0.936) TCGA-D8-A4Z1-01 10 68280418 68280418 G A CTNNA3 Silent p.A496A 0.12 TCGA-D8-A4Z1-01 11 117789456 117789456 G A TMPRSS13 Missense_Mutation p.S40F 0.05 deleterious_low_confidence(0.01) benign(0.277) TCGA-D8-A4Z1-01 11 13736148 13736148 C G FAR1 Missense_Mutation p.H350D 0.06 tolerated(0.62) benign(0) TCGA-D8-A4Z1-01 11 62400546 62400546 G A GANAB Missense_Mutation p.S271F 0.11 deleterious(0) probably_damaging(0.934) TCGA-D8-A4Z1-01 12 48258951 48258951 C A VDR Missense_Mutation p.M102I 0.07 tolerated(0.24) benign(0.09) TCGA-D8-A4Z1-01 12 50494270 50494270 C T SMARCD1 3'UTR 0.10 TCGA-D8-A4Z1-01 14 21109617 21109617 G A OR6S1 Silent p.V78V 0.19 TCGA-D8-A4Z1-01 14 25281930 25281930 C T STXBP6 Missense_Mutation p.M206I 0.14 tolerated(0.25) benign(0.001) TCGA-D8-A4Z1-01 14 38061311 38061311 G C FOXA1 Missense_Mutation p.D226E 0.06 deleterious(0) probably_damaging(0.992) TCGA-D8-A4Z1-01 16 18434545 18434545 G A NPIPA8 5'Flank 0.11 TCGA-D8-A4Z1-01 16 20818405 20818405 G A AC004381.6 Missense_Mutation p.E44K 0.09 tolerated(0.41) benign(0.006) TCGA-D8-A4Z1-01 16 2827038 2827038 C G TCEB2 Missense_Mutation p.E32Q 0.09 tolerated(0.2) benign(0.086) TCGA-D8-A4Z1-01 16 88747586 88747586 G A SNAI3 Missense_Mutation p.H205Y 0.09 deleterious(0) possibly_damaging(0.728) TCGA-D8-A4Z1-01 17 40715191 40715191 C T COASY Missense_Mutation p.P213L 0.09 tolerated(0.12) possibly_damaging(0.659) TCGA-D8-A4Z1-01 17 40715279 40715279 C T COASY Silent p.V242V 0.12 TCGA-D8-A4Z1-01 17 40726211 40726211 C T PSMC3IP Silent p.V81V 0.14 TCGA-D8-A4Z1-01 17 56665337 56665337 C T TEX14 Silent p.Q880Q 0.11 TCGA-D8-A4Z1-01 17 76354964 76354964 G A SOCS3 Silent p.R71R 0.06 TCGA-D8-A4Z1-01 18 63489391 63489391 G A CDH7 Missense_Mutation p.D234N 0.08 deleterious(0) probably_damaging(0.998) TCGA-D8-A4Z1-01 19 44376705 44376705 C T ZNF404 3'UTR 0.08 TCGA-D8-A4Z1-01 19 46215382 46215382 C G FBXO46 Missense_Mutation p.E458Q 0.17 deleterious(0) probably_damaging(0.969) TCGA-D8-A4Z1-01 19 5240207 5240207 C T PTPRS Intron 0.09 TCGA-D8-A4Z1-01 1 10527263 10527263 G C DFFA Nonsense_Mutation p.S142* 0.09 TCGA-D8-A4Z1-01 1 180794351 180794351 C A XPR1 Missense_Mutation p.F335L 0.08 tolerated(1) benign(0) TCGA-D8-A4Z1-01 1 185878571 185878571 C T HMCN1 Missense_Mutation p.P242S 0.11 probably_damaging(0.968) TCGA-D8-A4Z1-01 1 2235943 2235943 C T SKI Silent p.F562F 0.07 TCGA-D8-A4Z1-01 1 53544581 53544581 G A PODN Missense_Mutation p.A515T 0.07 deleterious(0.04) possibly_damaging(0.855) TCGA-D8-A4Z1-01 20 2442521 2442521 G A SNRPB Intron 0.11 TCGA-D8-A4Z1-01 20 47864983 47864983 G C ZNFX1 Silent p.L1526L 0.07 TCGA-D8-A4Z1-01 3 45965252 45965252 G A FYCO1 Silent p.L1419L 0.07 TCGA-D8-A4Z1-01 4 6304057 6304057 C A WFS1 Silent p.I845I 0.07 TCGA-D8-A4Z1-01 5 1217015 1217015 G A SLC6A19 Silent p.A376A 0.09 TCGA-D8-A4Z1-01 5 140531573 140531573 G A PCDHB6 Missense_Mutation p.E579K 0.08 deleterious(0) benign(0.358) TCGA-D8-A4Z1-01 5 70837323 70837323 G C BDP1 Missense_Mutation p.S2022T 0.14 tolerated(0.27) possibly_damaging(0.737) TCGA-D8-A4Z1-01 6 28359280 28359280 C T ZSCAN12 Missense_Mutation p.E263K 0.08 tolerated(0.37) benign(0.106) TCGA-D8-A4Z1-01 6 31079799 31079799 C T C6orf15 Missense_Mutation p.E113K 0.10 deleterious(0.01) possibly_damaging(0.801) TCGA-D8-A4Z1-01 6 38825419 38825419 C T DNAH8 Silent p.L1736L 0.09 TCGA-D8-A4Z1-01 6 74229113 74229113 C T EEF1A1 Missense_Mutation p.D91N 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.847) TCGA-D8-A4Z1-01 7 2577792 2577792 C T BRAT1 Missense_Mutation p.D793N 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-D8-A4Z1-01 8 104225209 104225209 C T BAALC Missense_Mutation p.P75S 0.09 tolerated(1) benign(0.002) TCGA-D8-A4Z1-01 8 73848367 73848367 G A KCNB2 Nonsense_Mutation p.W259* 0.06 TCGA-D8-A4Z1-01 8 9912116 9912116 C T MSRA Silent p.I30I 0.07 TCGA-D8-A4Z1-01 9 133294317 133294317 G A HMCN2 Missense_Mutation p.D84N 0.08 tolerated(1) benign(0.035) TCGA-D8-A4Z1-01 9 137804937 137804937 C A FCN1 Missense_Mutation p.W131C 0.07 deleterious(0) probably_damaging(0.931) TCGA-D8-A4Z1-01 X 30873310 30873310 G A TAB3 Nonsense_Mutation p.Q158* 0.10 TCGA-D8-A73U-01 10 105139667 105139667 C G TAF5 Nonsense_Mutation p.S435* 0.13 TCGA-D8-A73U-01 10 105793915 105793915 C T COL17A1 Missense_Mutation p.G1315E 0.16 unknown(0) TCGA-D8-A73U-01 10 122626241 122626241 C G WDR11 Silent p.L385L 0.09 TCGA-D8-A73U-01 10 132890796 132890796 G A TCERG1L 3'UTR 0.11 TCGA-D8-A73U-01 10 24910150 24910150 G A ARHGAP21 Missense_Mutation p.S225L 0.08 tolerated(0.14) benign(0.012) TCGA-D8-A73U-01 10 43650967 43650967 C T CSGALNACT2 Missense_Mutation p.L124F 0.24 tolerated(0.26) probably_damaging(1) TCGA-D8-A73U-01 10 48428765 48428765 C G GDF10 Missense_Mutation p.R374T 0.10 deleterious(0) probably_damaging(0.993) TCGA-D8-A73U-01 10 50820030 50820030 C T SLC18A3 Missense_Mutation p.S415L 0.12 deleterious(0) probably_damaging(0.998) TCGA-D8-A73U-01 10 51065376 51065376 G A PARG Missense_Mutation p.H292Y 0.03 tolerated(1) benign(0.444) TCGA-D8-A73U-01 10 61719401 61719401 G T C10orf40 5'UTR 0.16 TCGA-D8-A73U-01 10 73039678 73039678 G A UNC5B Silent p.V60V 0.10 TCGA-D8-A73U-01 10 95662292 95662292 C T SLC35G1 3'UTR 0.12 TCGA-D8-A73U-01 11 112046334 112046334 C T BCO2 Nonsense_Mutation p.R4* 0.12 TCGA-D8-A73U-01 11 113265792 113265792 G A ANKK1 Missense_Mutation p.D208N 0.14 deleterious(0.04) benign(0.443) TCGA-D8-A73U-01 11 118444379 118444379 G A ARCN1 Intron 0.10 TCGA-D8-A73U-01 11 1579471 1579471 C T DUSP8 Missense_Mutation p.V190I 0.13 deleterious(0) possibly_damaging(0.463) TCGA-D8-A73U-01 11 17331194 17331194 C G NUCB2 Missense_Mutation p.S152C 0.14 deleterious(0.03) possibly_damaging(0.841) TCGA-D8-A73U-01 11 18743474 18743474 G A IGSF22 Missense_Mutation p.P75L 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A73U-01 11 3877569 3877569 C T STIM1 Silent p.L23L 0.07 TCGA-D8-A73U-01 11 44950847 44950847 G C TSPAN18 3'UTR 0.13 TCGA-D8-A73U-01 11 5220977 5220977 C T OR51V1 Silent p.L318L 0.06 TCGA-D8-A73U-01 11 55658629 55658629 G A TRIM51 Missense_Mutation p.E294K 0.06 deleterious(0.02) benign(0.04) TCGA-D8-A73U-01 11 70331657 70331657 C T SHANK2 Missense_Mutation p.A1582T 0.10 tolerated(0.1) possibly_damaging(0.499) TCGA-D8-A73U-01 11 78147802 78147802 C T NARS2 Missense_Mutation p.E450K 0.09 deleterious(0) probably_damaging(0.999) TCGA-D8-A73U-01 11 83676447 83676447 G A DLG2 Missense_Mutation p.S374L 0.09 tolerated(0.06) probably_damaging(0.988) TCGA-D8-A73U-01 12 110466338 110466338 A T ANKRD13A Missense_Mutation p.T323S 0.25 tolerated(1) possibly_damaging(0.755) TCGA-D8-A73U-01 12 110968380 110968380 C T RAD9B Silent p.F392F 0.11 TCGA-D8-A73U-01 12 116421168 116421168 G A MED13L Missense_Mutation p.S1570F 0.12 deleterious(0.03) unknown(0) TCGA-D8-A73U-01 12 120534339 120534339 G T RAB35 3'UTR 0.18 TCGA-D8-A73U-01 12 120534936 120534936 G C RAB35 3'UTR 0.12 TCGA-D8-A73U-01 12 12871758 12871758 G C CDKN1B Splice_Site p.X159_splice 0.15 TCGA-D8-A73U-01 12 21243032 21243032 G A SLCO1B7 Missense_Mutation p.E639K 0.06 tolerated(0.49) benign(0.086) TCGA-D8-A73U-01 12 29673648 29673648 C A TMTC1 Silent p.R597R 0.21 TCGA-D8-A73U-01 12 38714974 38714974 C T ALG10B Nonsense_Mutation p.Q461* 0.22 TCGA-D8-A73U-01 12 46765054 46765054 C T SLC38A2 Missense_Mutation p.R8Q 0.09 tolerated(0.14) benign(0.105) TCGA-D8-A73U-01 12 49227086 49227086 C G DDX23 Missense_Mutation p.E593Q 0.09 tolerated(0.34) benign(0.425) TCGA-D8-A73U-01 12 51489802 51489802 C T TFCP2 Missense_Mutation p.E481K 0.10 deleterious(0.01) benign(0.162) TCGA-D8-A73U-01 12 52648071 52648071 C T KRT121P RNA 0.05 TCGA-D8-A73U-01 12 5916523 5916523 G A ANO2 Silent p.L298L 0.07 TCGA-D8-A73U-01 12 71978598 71978598 G A LGR5 3'UTR 0.13 TCGA-D8-A73U-01 13 41507417 41507417 C T ELF1 3'UTR 0.13 TCGA-D8-A73U-01 13 46056582 46056582 G A COG3 Missense_Mutation p.D231N 0.10 deleterious(0.02) possibly_damaging(0.614) TCGA-D8-A73U-01 13 67800228 67800228 G A PCDH9 Missense_Mutation p.S782F 0.11 deleterious(0) possibly_damaging(0.866) TCGA-D8-A73U-01 13 99519769 99519769 C T DOCK9 Missense_Mutation p.E1066K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A73U-01 14 101489686 101489686 G A MIR411 RNA 0.06 TCGA-D8-A73U-01 14 42356711 42356711 G A LRFN5 Missense_Mutation p.E295K 0.08 tolerated(1) benign(0.01) TCGA-D8-A73U-01 14 94088887 94088887 G A UNC79 Missense_Mutation p.E1593K 0.08 deleterious_low_confidence(0.02) benign(0.036) TCGA-D8-A73U-01 15 34543257 34543257 C T SLC12A6 Silent p.E445E 0.05 TCGA-D8-A73U-01 15 40476054 40476054 C G BUB1B Missense_Mutation p.P241A 0.06 deleterious(0) probably_damaging(0.967) TCGA-D8-A73U-01 15 43622539 43622539 G A LCMT2 Missense_Mutation p.P50L 0.16 deleterious(0) probably_damaging(0.992) TCGA-D8-A73U-01 15 62221928 62221928 C T VPS13C Missense_Mutation p.D2020N 0.12 tolerated(0.06) benign(0.005) TCGA-D8-A73U-01 15 64386027 64386027 C T FAM96A 5'UTR 0.10 TCGA-D8-A73U-01 15 65890717 65890717 C T VWA9 Silent p.R173R 0.11 TCGA-D8-A73U-01 15 68608044 68608044 C T ITGA11 Missense_Mutation p.E913K 0.15 deleterious(0) probably_damaging(1) TCGA-D8-A73U-01 15 78909414 78909414 C T CHRNA3 Missense_Mutation p.R110H 0.10 tolerated(0.16) benign(0.065) TCGA-D8-A73U-01 16 25255353 25255353 C G ZKSCAN2 Missense_Mutation p.E578D 0.07 deleterious(0) probably_damaging(0.999) TCGA-D8-A73U-01 16 31926477 31926477 G A ZNF267 Missense_Mutation p.D303N 0.09 deleterious(0.02) benign(0.012) TCGA-D8-A73U-01 16 449037 449037 G A NME4 Missense_Mutation p.D47N 0.06 deleterious(0.01) probably_damaging(1) TCGA-D8-A73U-01 16 4674988 4674988 C T MGRN1 Silent p.I9I 0.09 TCGA-D8-A73U-01 16 4930220 4930220 C T UBN1 3'UTR 0.32 TCGA-D8-A73U-01 16 711944 711944 C G WDR90 Silent p.L1306L 0.10 TCGA-D8-A73U-01 16 83813704 83813704 G C CDH13 Missense_Mutation p.G652R 0.11 tolerated(0.14) probably_damaging(0.991) TCGA-D8-A73U-01 17 17719774 17719774 T C SREBF1 Missense_Mutation p.M712V 0.10 tolerated(0.09) benign(0.002) TCGA-D8-A73U-01 17 18058678 18058678 C G MYO15A Missense_Mutation p.I2797M 0.21 unknown(0) TCGA-D8-A73U-01 17 21322176 21322176 C T KCNJ12 3'UTR 0.17 TCGA-D8-A73U-01 17 21731600 21731600 G A UBBP4 Silent p.L225L 0.16 TCGA-D8-A73U-01 17 2279013 2279013 C T SGSM2 Silent p.F776F 0.23 TCGA-D8-A73U-01 17 29679291 29679291 C T NF1 Nonsense_Mutation p.Q2492* 0.07 TCGA-D8-A73U-01 17 33768243 33768243 G C SLFN13 Missense_Mutation p.Q689E 0.15 tolerated(0.06) benign(0.124) TCGA-D8-A73U-01 17 37873659 37873659 C T ERBB2 Silent p.L608L 0.08 TCGA-D8-A73U-01 17 44895976 44895976 C G WNT3 5'UTR 0.17 TCGA-D8-A73U-01 17 47115628 47115628 G A IGF2BP1 Missense_Mutation p.R167H 0.13 deleterious(0.03) possibly_damaging(0.551) TCGA-D8-A73U-01 17 48227631 48227631 C T PPP1R9B Missense_Mutation p.E82K 0.06 tolerated(0.29) benign(0.017) TCGA-D8-A73U-01 17 67298995 67298995 C T ABCA5 Missense_Mutation p.G328E 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-D8-A73U-01 18 14772157 14772157 T - ANKRD30B Frame_Shift_Del p.F421Lfs*48 0.10 TCGA-D8-A73U-01 18 5291615 5291615 G A ZBTB14 Nonsense_Mutation p.Q198* 0.22 TCGA-D8-A73U-01 19 14263200 14263200 C T LPHN1 Silent p.G1195G 0.20 TCGA-D8-A73U-01 19 14769322 14769322 C A EMR3 Intron 0.16 TCGA-D8-A73U-01 19 38023317 38023317 G A ZNF793 Silent p.L25L 0.22 TCGA-D8-A73U-01 19 39125710 39125710 G A EIF3K Missense_Mutation p.E193K 0.11 deleterious(0) possibly_damaging(0.889) TCGA-D8-A73U-01 19 39369815 39369815 C T SIRT2 Missense_Mutation p.E384K 0.08 tolerated_low_confidence(0.1) benign(0.146) TCGA-D8-A73U-01 19 54544119 54544119 C T VSTM1 3'UTR 0.10 TCGA-D8-A73U-01 19 56009439 56009439 C T SSC5D Missense_Mutation p.A527V 0.22 probably_damaging(0.947) TCGA-D8-A73U-01 19 57642875 57642875 G A USP29 3'UTR 0.16 TCGA-D8-A73U-01 19 8191352 8191352 C T FBN3 Missense_Mutation p.D852N 0.09 tolerated(0.05) probably_damaging(0.975) TCGA-D8-A73U-01 1 115400075 115400075 C T SYCP1 Missense_Mutation p.S83F 0.11 tolerated(0.1) probably_damaging(0.938) TCGA-D8-A73U-01 1 144816505 144816505 C T NBPF9 Missense_Mutation p.P212L 0.05 tolerated(0.19) probably_damaging(0.994) TCGA-D8-A73U-01 1 152127621 152127621 C T RPTN Missense_Mutation p.E652K 0.04 deleterious(0.02) benign(0.259) TCGA-D8-A73U-01 1 152283841 152283841 C T FLG Missense_Mutation p.G1174E 0.05 probably_damaging(0.931) TCGA-D8-A73U-01 1 154934997 154934997 C A SHC1 3'UTR 0.09 TCGA-D8-A73U-01 1 155912472 155912472 C T RXFP4 Silent p.F324F 0.07 TCGA-D8-A73U-01 1 156236383 156236383 C G SMG5 Missense_Mutation p.E402Q 0.06 deleterious(0.01) benign(0.131) TCGA-D8-A73U-01 1 158517746 158517746 G A OR6Y1 Silent p.I50I 0.11 TCGA-D8-A73U-01 1 167791312 167791312 G C ADCY10 Silent p.L1412L 0.05 TCGA-D8-A73U-01 1 173628284 173628284 C T ANKRD45 Missense_Mutation p.V92M 0.12 deleterious(0) possibly_damaging(0.819) TCGA-D8-A73U-01 1 177899736 177899736 G A SEC16B Missense_Mutation p.P1019S 0.09 tolerated(0.07) probably_damaging(0.915) TCGA-D8-A73U-01 1 180135623 180135623 C T QSOX1 Intron 0.15 TCGA-D8-A73U-01 1 180905182 180905182 G A KIAA1614 Missense_Mutation p.E713K 0.14 deleterious(0.01) possibly_damaging(0.757) TCGA-D8-A73U-01 1 200523707 200523707 C T KIF14 Missense_Mutation p.E1486K 0.09 tolerated(0.06) benign(0.01) TCGA-D8-A73U-01 1 206757946 206757946 C G RASSF5 Silent p.L306L 0.05 TCGA-D8-A73U-01 1 207220557 207220557 C T YOD1 3'UTR 0.07 TCGA-D8-A73U-01 1 210010331 210010331 G C DIEXF Missense_Mutation p.Q279H 0.08 deleterious(0) probably_damaging(0.926) TCGA-D8-A73U-01 1 226595529 226595529 C T PARP1 Silent p.R34R 0.11 TCGA-D8-A73U-01 1 2426947 2426947 G A PLCH2 Silent p.K564K 0.08 TCGA-D8-A73U-01 1 243493865 243493865 G A SDCCAG8 Silent p.L364L 0.10 TCGA-D8-A73U-01 1 34037222 34037222 C G CSMD2 Missense_Mutation p.D2625H 0.10 deleterious(0.03) probably_damaging(0.944) TCGA-D8-A73U-01 1 3650091 3650091 G C TP73 3'UTR 0.13 TCGA-D8-A73U-01 1 46500609 46500609 C T MAST2 Missense_Mutation p.A1423V 0.25 tolerated_low_confidence(0.43) benign(0.003) TCGA-D8-A73U-01 1 74492494 74492494 G C LRRIQ3 3'UTR 0.15 TCGA-D8-A73U-01 20 13605888 13605888 G A TASP1 Missense_Mutation p.H53Y 0.19 deleterious(0) probably_damaging(0.971) TCGA-D8-A73U-01 20 30898398 30898398 C T KIF3B Missense_Mutation p.S273F 0.06 deleterious(0) probably_damaging(0.998) TCGA-D8-A73U-01 20 60888162 60888162 G T LAMA5 Silent p.L2979L 0.18 TCGA-D8-A73U-01 20 61431791 61431791 G A MRGBP 3'UTR 0.11 TCGA-D8-A73U-01 20 7990938 7990938 G C TMX4 Missense_Mutation p.C67W 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A73U-01 21 43802259 43802259 C G TMPRSS3 Missense_Mutation p.K289N 0.06 deleterious(0.02) benign(0.182) TCGA-D8-A73U-01 21 46197223 46197223 G A UBE2G2 Missense_Mutation p.H79Y 0.06 deleterious(0) probably_damaging(0.998) TCGA-D8-A73U-01 21 47571505 47571505 G A FTCD Silent p.L201L 0.06 TCGA-D8-A73U-01 22 20637218 20637218 C T AC011718.2 RNA 0.12 TCGA-D8-A73U-01 22 21056531 21056531 C G TMEM191A RNA 0.08 TCGA-D8-A73U-01 22 22054028 22054028 C G YPEL1 3'UTR 0.09 TCGA-D8-A73U-01 22 36886283 36886283 C T FOXRED2 Silent p.Q609Q 0.08 TCGA-D8-A73U-01 22 43010934 43010934 C G POLDIP3 5'UTR 0.09 TCGA-D8-A73U-01 22 45582642 45582642 G A NUP50 3'UTR 0.06 TCGA-D8-A73U-01 22 46726594 46726594 G C GTSE1 3'UTR 0.13 TCGA-D8-A73U-01 2 102984496 102984496 G C IL18R1 Missense_Mutation p.L90F 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-D8-A73U-01 2 109403332 109403332 C G CCDC138 Silent p.L18L 0.09 TCGA-D8-A73U-01 2 125530382 125530382 C T CNTNAP5 Missense_Mutation p.S846L 0.09 deleterious(0.05) benign(0.392) TCGA-D8-A73U-01 2 136561630 136561630 G A LCT Silent p.I1511I 0.14 TCGA-D8-A73U-01 2 15601404 15601404 G A NBAS Missense_Mutation p.P754S 0.05 tolerated(0.09) benign(0.305) TCGA-D8-A73U-01 2 15841447 15841447 G C AC008271.1 Missense_Mutation p.D78H 0.10 probably_damaging(0.937) TCGA-D8-A73U-01 2 17941303 17941303 G A GEN1 Silent p.L31L 0.07 TCGA-D8-A73U-01 2 183821235 183821235 G C NCKAP1 Missense_Mutation p.T709S 0.17 tolerated(0.12) benign(0.099) TCGA-D8-A73U-01 2 20458039 20458039 G A PUM2 Nonsense_Mutation p.Q817* 0.07 TCGA-D8-A73U-01 2 228398331 228398331 C G AGFG1 Missense_Mutation p.A318G 0.14 tolerated(0.16) probably_damaging(0.997) TCGA-D8-A73U-01 2 241531410 241531410 G A CAPN10 Silent p.L177L 0.07 TCGA-D8-A73U-01 2 27560391 27560391 C G GTF3C2 Missense_Mutation p.E329Q 0.10 deleterious(0.01) possibly_damaging(0.488) TCGA-D8-A73U-01 2 39025567 39025567 C T DHX57 Silent p.K1345K 0.11 TCGA-D8-A73U-01 3 100365497 100365497 C T GPR128 Nonsense_Mutation p.Q399* 0.19 TCGA-D8-A73U-01 3 11301639 11301639 G A HRH1 Missense_Mutation p.D306N 0.08 tolerated(0.49) benign(0.003) TCGA-D8-A73U-01 3 158372341 158372341 C T GFM1 Missense_Mutation p.S335L 0.16 deleterious(0.03) benign(0.004) TCGA-D8-A73U-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.19 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A73U-01 3 186504329 186504329 G C EIF4A2 Missense_Mutation p.L222F 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-D8-A73U-01 3 194140681 194140681 G A ATP13A3 Missense_Mutation p.S1110F 0.13 tolerated(0.71) benign(0.181) TCGA-D8-A73U-01 3 33580303 33580303 G C CLASP2 Missense_Mutation p.S1187C 0.08 deleterious(0.04) possibly_damaging(0.469) TCGA-D8-A73U-01 3 38136501 38136501 G A DLEC1 Missense_Mutation p.R684K 0.34 tolerated(0.4) benign(0) TCGA-D8-A73U-01 3 44763013 44763013 G A ZNF502 Missense_Mutation p.G235E 0.11 deleterious(0) probably_damaging(1) TCGA-D8-A73U-01 3 52723107 52723107 T C GNL3 Silent p.D142D 0.11 TCGA-D8-A73U-01 3 58486802 58486802 C T KCTD6 Nonsense_Mutation p.Q53* 0.09 TCGA-D8-A73U-01 3 9782502 9782502 G T BRPF1 Missense_Mutation p.K533N 0.24 deleterious(0) benign(0.134) TCGA-D8-A73U-01 4 140265403 140265403 C T NAA15 Missense_Mutation p.R201W 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-D8-A73U-01 4 170051247 170051247 C T SH3RF1 Missense_Mutation p.G377S 0.16 tolerated(0.11) probably_damaging(0.957) TCGA-D8-A73U-01 4 189068043 189068043 G - TRIML1 Frame_Shift_Del p.K309Nfs*54 0.12 TCGA-D8-A73U-01 4 42088218 42088218 C T SLC30A9 3'UTR 0.21 TCGA-D8-A73U-01 5 138941992 138941992 G A UBE2D2 Intron 0.07 TCGA-D8-A73U-01 5 140517062 140517062 C T PCDHB5 Silent p.A682A 0.09 TCGA-D8-A73U-01 5 140597 140597 G A PLEKHG4B Missense_Mutation p.E59K 0.08 tolerated(0.06) benign(0.098) TCGA-D8-A73U-01 5 150585037 150585037 C T CCDC69 Splice_Site p.X17_splice 0.13 TCGA-D8-A73U-01 5 56546917 56546917 C A GPBP1 Nonsense_Mutation p.S377* 0.07 TCGA-D8-A73U-01 5 65016580 65016580 T C SGTB Missense_Mutation p.S19G 0.10 deleterious(0) benign(0.119) TCGA-D8-A73U-01 5 908132 908132 G C TRIP13 Missense_Mutation p.Q234H 0.05 deleterious(0) benign(0.378) TCGA-D8-A73U-01 6 100391007 100391007 G A MCHR2 Silent p.L135L 0.17 TCGA-D8-A73U-01 6 108678022 108678022 C T LACE1 Nonsense_Mutation p.Q216* 0.11 TCGA-D8-A73U-01 6 136597415 136597415 G A BCLAF1 Silent p.L416L 0.05 TCGA-D8-A73U-01 6 139159509 139159509 C G ECT2L Nonsense_Mutation p.S67* 0.07 TCGA-D8-A73U-01 6 146756329 146756329 C T GRM1 3'UTR 0.13 TCGA-D8-A73U-01 6 24873991 24873991 C T FAM65B Silent p.K46K 0.07 TCGA-D8-A73U-01 6 26468086 26468086 G A BTN2A1 Intron 0.14 TCGA-D8-A73U-01 6 28134539 28134539 G A ZNF192P1 RNA 0.14 TCGA-D8-A73U-01 6 29394064 29394064 C T OR11A1 3'UTR 0.09 TCGA-D8-A73U-01 6 39046769 39046769 C T GLP1R Silent p.L307L 0.08 TCGA-D8-A73U-01 6 43415090 43415090 C T ABCC10 Missense_Mutation p.R1217W 0.08 deleterious(0) probably_damaging(0.912) TCGA-D8-A73U-01 6 43528030 43528030 G T XPO5 Missense_Mutation p.S369Y 0.20 deleterious(0) probably_damaging(0.949) TCGA-D8-A73U-01 6 47594376 47594376 C T CD2AP 3'UTR 0.19 TCGA-D8-A73U-01 6 71666165 71666165 G A B3GAT2 5'UTR 0.11 TCGA-D8-A73U-01 6 86204019 86204019 C G NT5E 3'UTR 0.06 TCGA-D8-A73U-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.16 deleterious(0) possibly_damaging(0.79) TCGA-D8-A73U-01 6 96659309 96659309 G A FUT9 3'UTR 0.14 TCGA-D8-A73U-01 7 107399881 107399881 C G CBLL1 3'UTR 0.18 TCGA-D8-A73U-01 7 1273269 1273269 C T UNCX Missense_Mutation p.P130S 0.16 deleterious(0) probably_damaging(1) TCGA-D8-A73U-01 7 131194200 131194200 G C PODXL Missense_Mutation p.S316C 0.11 deleterious(0) possibly_damaging(0.85) TCGA-D8-A73U-01 7 136700034 136700034 G T CHRM2 Missense_Mutation p.G141V 0.21 deleterious(0.04) probably_damaging(0.994) TCGA-D8-A73U-01 7 143421471 143421471 A G FAM115C Missense_Mutation p.Y729C 0.08 deleterious(0) probably_damaging(0.999) TCGA-D8-A73U-01 7 156555805 156555805 G A LMBR1 Missense_Mutation p.L206F 0.07 deleterious(0) probably_damaging(0.969) TCGA-D8-A73U-01 7 57530121 57530121 C T ZNF716 3'UTR 0.22 TCGA-D8-A73U-01 7 6193680 6193680 C G USP42 Missense_Mutation p.S832C 0.10 deleterious(0.04) possibly_damaging(0.79) TCGA-D8-A73U-01 7 91503974 91503974 G A MTERF Missense_Mutation p.S45L 0.06 deleterious(0) possibly_damaging(0.791) TCGA-D8-A73U-01 8 110099952 110099952 G A TRHR Missense_Mutation p.D71N 0.06 deleterious(0) probably_damaging(0.996) TCGA-D8-A73U-01 8 64099876 64099877 - T YTHDF3 Frame_Shift_Ins p.I436Yfs*4 0.18 TCGA-D8-A73U-01 8 72935167 72935167 C T TRPA1 Missense_Mutation p.A1112T 0.20 tolerated(0.43) benign(0.004) TCGA-D8-A73U-01 9 104357001 104357001 C T PPP3R2 Missense_Mutation p.G71E 0.09 tolerated(0.05) possibly_damaging(0.491) TCGA-D8-A73U-01 9 115580051 115580051 T C SNX30 Silent p.L139L 0.12 TCGA-D8-A73U-01 9 123930399 123930399 G A CNTRL Missense_Mutation p.R1957K 0.13 benign(0.044) TCGA-D8-A73U-01 9 125923304 125923304 C G STRBP Missense_Mutation p.Q193H 0.16 tolerated(0.16) benign(0.034) TCGA-D8-A73U-01 9 128001418 128001418 G A HSPA5 Silent p.F266F 0.10 TCGA-D8-A73U-01 9 131847301 131847301 G T DOLPP1 Splice_Site p.X60_splice 0.14 TCGA-D8-A73U-01 9 138011823 138011823 A G OLFM1 Silent p.S401S 0.16 TCGA-D8-A73U-01 9 14087242 14087242 C T NFIB 3'Flank 0.17 TCGA-D8-A73U-01 9 85611971 85611971 C G RASEF Missense_Mutation p.E626Q 0.13 tolerated(0.06) probably_damaging(0.92) TCGA-D8-A73U-01 9 92220789 92220789 C G GADD45G Silent p.L121L 0.16 TCGA-D8-A73U-01 9 95021166 95021166 G A IARS Silent p.F662F 0.09 TCGA-D8-A73U-01 X 100387226 100387226 C G CENPI Silent p.L445L 0.05 TCGA-D8-A73U-01 X 110544666 110544666 C T DCX 3'UTR 0.25 TCGA-D8-A73U-01 X 117578397 117578397 G A WDR44 Missense_Mutation p.E863K 0.06 tolerated(0.08) benign(0.104) TCGA-D8-A73U-01 X 134126110 134126110 G A SMIM10 3'UTR 0.10 TCGA-D8-A73U-01 X 134383059 134383059 C G RP13-210D15.4 5'Flank 0.04 TCGA-D8-A73U-01 X 153649241 153649241 G A TAZ Splice_Site p.X260_splice 0.11 TCGA-D8-A73U-01 X 47428276 47428276 G C ARAF Missense_Mutation p.Q412H 0.10 deleterious(0) probably_damaging(0.996) TCGA-D8-A73U-01 X 54223504 54223504 C T WNK3 3'UTR 0.12 TCGA-D8-A73U-01 X 70597520 70597520 G A TAF1 Missense_Mutation p.R281K 0.11 tolerated(0.75) benign(0.047) TCGA-D8-A73U-01 X 73062011 73062011 T A XIST RNA 0.19 TCGA-D8-A73W-01 10 70182303 70182303 C T DNA2 Missense_Mutation p.V907I 0.34 tolerated(0.05) benign(0.114) TCGA-D8-A73W-01 10 70775593 70775593 G A KIAA1279 Silent p.L429L 0.32 TCGA-D8-A73W-01 11 46387910 46387910 G A DGKZ Missense_Mutation p.R35H 0.36 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D8-A73W-01 11 71806061 71806061 A G LRTOMT 5'UTR 0.06 TCGA-D8-A73W-01 11 89774566 89774566 C T TRIM49C Missense_Mutation p.P403S 0.23 deleterious(0.03) benign(0.035) TCGA-D8-A73W-01 12 115114218 115114218 A - TBX3 Frame_Shift_Del p.N333Kfs*28 0.24 TCGA-D8-A73W-01 12 124415918 124415918 C G DNAH10 Missense_Mutation p.T4154R 0.42 probably_damaging(0.963) TCGA-D8-A73W-01 12 53086292 53086292 C T KRT77 Missense_Mutation p.R447H 0.26 deleterious(0.01) probably_damaging(0.976) TCGA-D8-A73W-01 13 33703737 33703737 G A STARD13 Silent p.R359R 0.32 TCGA-D8-A73W-01 14 45537652 45537652 T G FAM179B Missense_Mutation p.L1539R 0.23 deleterious(0) probably_damaging(1) TCGA-D8-A73W-01 15 22743315 22743315 G A GOLGA6L1 Missense_Mutation p.R567Q 0.14 unknown(0) TCGA-D8-A73W-01 15 40589045 40589045 T C PLCB2 Missense_Mutation p.K463R 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-D8-A73W-01 15 44943801 44943801 A C SPG11 Nonsense_Mutation p.Y448* 0.06 TCGA-D8-A73W-01 16 20826343 20826343 G T AC004381.6 Nonsense_Mutation p.E116* 0.24 TCGA-D8-A73W-01 16 67910875 67910875 G A EDC4 Missense_Mutation p.A151T 0.33 deleterious(0.03) benign(0.282) TCGA-D8-A73W-01 17 10404603 10404603 G A MYH1 Nonsense_Mutation p.Q1188* 0.54 TCGA-D8-A73W-01 17 61831853 61831853 G A CCDC47 Missense_Mutation p.A325V 0.15 tolerated(0.17) benign(0.397) TCGA-D8-A73W-01 17 72366697 72366697 C T GPR142 Silent p.H132H 0.44 TCGA-D8-A73W-01 17 78444530 78444530 A G NPTX1 3'UTR 0.12 TCGA-D8-A73W-01 18 70209173 70209173 C G CBLN2 Missense_Mutation p.D75H 0.08 deleterious(0) possibly_damaging(0.85) TCGA-D8-A73W-01 19 14693949 14693949 C T CLEC17A 5'UTR 0.28 TCGA-D8-A73W-01 19 41257104 41257104 A C SNRPA 5'UTR 0.45 TCGA-D8-A73W-01 19 43382155 43382155 G A PSG1 Missense_Mutation p.R114W 0.35 deleterious(0.04) benign(0.001) TCGA-D8-A73W-01 19 6177373 6177373 C T ACSBG2 Missense_Mutation p.A291V 0.22 tolerated(0.17) benign(0.297) TCGA-D8-A73W-01 1 155256991 155256991 G A HCN3 Missense_Mutation p.R502H 0.10 deleterious(0.02) probably_damaging(0.986) TCGA-D8-A73W-01 1 68512684 68512684 G A DIRAS3 Silent p.R99R 0.56 TCGA-D8-A73W-01 1 89733102 89733102 C T GBP5 Silent p.L142L 0.52 TCGA-D8-A73W-01 1 914508 914508 C T C1orf170 Silent p.P540P 0.40 TCGA-D8-A73W-01 20 1559071 1559071 C T RP4-576H24.4 Missense_Mutation p.G115S 0.43 deleterious(0) probably_damaging(0.995) TCGA-D8-A73W-01 20 39803528 39803530 GGA - PLCG1 3'UTR 0.12 TCGA-D8-A73W-01 20 57564550 57564550 C G NELFCD Missense_Mutation p.S189C 0.34 deleterious(0) probably_damaging(0.995) TCGA-D8-A73W-01 22 42383763 42383763 C T SEPT3 Missense_Mutation p.S184F 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-D8-A73W-01 2 166237099 166237099 T C SCN2A Intron 0.44 TCGA-D8-A73W-01 2 179456388 179456388 T G TTN Missense_Mutation p.E20053A 0.19 TCGA-D8-A73W-01 2 1893186 1893186 G A MYT1L Missense_Mutation p.R781W 0.24 deleterious(0) possibly_damaging(0.84) TCGA-D8-A73W-01 2 25462020 25462020 C - DNMT3A Frame_Shift_Del p.G796Vfs*6 0.25 TCGA-D8-A73W-01 2 26150906 26150906 A G KIF3C 3'UTR 0.28 TCGA-D8-A73W-01 2 56419876 56419876 G A CCDC85A Missense_Mutation p.A181T 0.44 tolerated(0.06) probably_damaging(0.954) TCGA-D8-A73W-01 3 171571465 171571465 C T TMEM212 Missense_Mutation p.T123I 0.30 tolerated(0.17) benign(0.047) TCGA-D8-A73W-01 3 33406149 33406149 C A FBXL2 Nonsense_Mutation p.C76* 0.33 TCGA-D8-A73W-01 3 8794178 8794178 C T OXTR 3'UTR 0.42 TCGA-D8-A73W-01 4 119552676 119552676 C T RP11-384K6.6 RNA 0.14 TCGA-D8-A73W-01 5 102433307 102433307 T C GIN1 Missense_Mutation p.N273S 0.31 tolerated(0.08) probably_damaging(0.968) TCGA-D8-A73W-01 5 111065735 111065735 T A NREP 3'UTR 0.41 TCGA-D8-A73W-01 5 160716308 160716308 C T GABRB2 3'UTR 0.32 TCGA-D8-A73W-01 5 178562919 178562919 C A ADAMTS2 Silent p.G692G 0.25 TCGA-D8-A73W-01 6 34949501 34949501 C T ANKS1A Missense_Mutation p.A157V 0.42 deleterious(0) probably_damaging(0.977) TCGA-D8-A73W-01 7 97821147 97821147 G A LMTK2 Missense_Mutation p.R457H 0.34 tolerated(0.33) benign(0.06) TCGA-D8-A73W-01 8 22273454 22273454 G A SLC39A14 Missense_Mutation p.G308D 0.07 tolerated(0.31) benign(0.082) TCGA-D8-A73W-01 8 55541160 55541160 C T RP1 Missense_Mutation p.S1573L 0.37 deleterious(0.01) possibly_damaging(0.452) TCGA-D8-A73W-01 9 125486748 125486748 C T OR1L4 Silent p.R160R 0.23 TCGA-D8-A73W-01 X 101911713 101911713 G A GPRASP1 Missense_Mutation p.E958K 0.34 deleterious(0.04) benign(0.103) TCGA-D8-A73W-01 X 109560832 109560832 C T AMMECR1 Silent p.E156E 0.27 TCGA-D8-A73W-01 X 155011282 155011282 G T SPRY3 3'UTR 0.39 TCGA-D8-A73W-01 X 71350342 71350342 T G RGAG4 Missense_Mutation p.Q350P 0.40 tolerated(0.07) benign(0.145) TCGA-D8-A73X-01 10 134712612 134712612 C T TTC40 Missense_Mutation p.A1024T 0.28 deleterious(0.03) possibly_damaging(0.894) TCGA-D8-A73X-01 10 32324495 32324495 G A KIF5B Missense_Mutation p.S306L 0.37 deleterious(0.01) benign(0.076) TCGA-D8-A73X-01 10 50167798 50167798 C T WDFY4 Silent p.D2721D 0.14 TCGA-D8-A73X-01 10 70764810 70764812 TCC - KIAA1279 In_Frame_Del p.P180del 0.55 TCGA-D8-A73X-01 11 117985638 117985638 T C TMPRSS4 Silent p.N335N 0.48 TCGA-D8-A73X-01 11 18057654 18057654 T C TPH1 Silent p.R51R 0.17 TCGA-D8-A73X-01 11 62416160 62416160 C T INTS5 Silent p.P464P 0.29 TCGA-D8-A73X-01 11 7960265 7960265 G A OR10A3 Missense_Mutation p.P268L 0.05 tolerated(0.07) benign(0.35) TCGA-D8-A73X-01 12 106460867 106460867 G A NUAK1 Missense_Mutation p.R567C 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-D8-A73X-01 12 108052128 108052128 A T BTBD11 3'UTR 0.10 TCGA-D8-A73X-01 12 130827607 130827607 C T PIWIL1 Missense_Mutation p.R51W 0.20 deleterious(0) probably_damaging(0.925) TCGA-D8-A73X-01 13 25058788 25058788 T C PARP4 Intron 0.35 TCGA-D8-A73X-01 13 38137439 38137439 G T POSTN 3'UTR 0.34 TCGA-D8-A73X-01 16 1584287 1584288 AG - TMEM204 Frame_Shift_Del p.R5Tfs*67 0.15 TCGA-D8-A73X-01 16 715211 715211 G - WDR90 Intron 0.22 TCGA-D8-A73X-01 17 16734830 16734830 A G KRT16P2 RNA 0.30 TCGA-D8-A73X-01 17 31341031 31341031 G A ASIC2 Silent p.N548N 0.19 TCGA-D8-A73X-01 19 19790381 19790381 A C ZNF101 Silent p.R195R 0.12 TCGA-D8-A73X-01 19 40433485 40433485 G A FCGBP Missense_Mutation p.R262C 0.23 possibly_damaging(0.854) TCGA-D8-A73X-01 19 49298484 49298484 G A BCAT2 3'UTR 0.10 TCGA-D8-A73X-01 19 55652325 55652325 G A TNNT1 Missense_Mutation p.R105W 0.42 deleterious(0.01) probably_damaging(0.989) TCGA-D8-A73X-01 1 110023846 110023846 C - SYPL2 3'UTR 0.34 TCGA-D8-A73X-01 1 145075638 145075638 G A PDE4DIP Silent p.P75P 0.11 TCGA-D8-A73X-01 1 171250015 171250015 C T FMO1 Nonsense_Mutation p.Q240* 0.07 TCGA-D8-A73X-01 1 18809714 18809714 C G KLHDC7A Missense_Mutation p.P747A 0.49 tolerated(0.27) benign(0.03) TCGA-D8-A73X-01 1 204125919 204125919 G T REN Missense_Mutation p.S235Y 0.34 deleterious(0) possibly_damaging(0.783) TCGA-D8-A73X-01 1 206652460 206652460 G T IKBKE Silent p.G389G 0.61 TCGA-D8-A73X-01 1 32690055 32690055 C A EIF3I Missense_Mutation p.R77S 0.37 deleterious(0.01) benign(0.299) TCGA-D8-A73X-01 1 45308591 45308591 G T PTCH2 Missense_Mutation p.P5Q 0.50 deleterious_low_confidence(0) benign(0.008) TCGA-D8-A73X-01 1 47653062 47653062 G A PDZK1IP1 Silent p.I35I 0.43 TCGA-D8-A73X-01 1 72400932 72400932 G T NEGR1 Missense_Mutation p.A80E 0.39 deleterious(0) probably_damaging(0.996) TCGA-D8-A73X-01 20 1229346 1229346 G A RAD21L1 Missense_Mutation p.R494Q 0.41 tolerated(0.62) benign(0.007) TCGA-D8-A73X-01 21 33104229 33104229 G A SCAF4 5'UTR 0.35 TCGA-D8-A73X-01 21 44339128 44339128 C T ERVH48-1 RNA 0.37 TCGA-D8-A73X-01 2 149216249 149216249 T G MBD5 5'UTR 0.26 TCGA-D8-A73X-01 2 152474926 152474926 C T NEB Missense_Mutation p.V3647I 0.33 benign(0.194) TCGA-D8-A73X-01 2 24484474 24484474 T C ITSN2 Silent p.L831L 0.33 TCGA-D8-A73X-01 2 62733321 62733321 G A TMEM17 5'UTR 0.31 TCGA-D8-A73X-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.47 tolerated(0.11) possibly_damaging(0.529) TCGA-D8-A73X-01 3 39307525 39307525 A G CX3CR1 Missense_Mutation p.L191S 0.29 tolerated(0.05) probably_damaging(0.984) TCGA-D8-A73X-01 3 48692531 48692531 G A CELSR3 Missense_Mutation p.A1645V 0.08 tolerated(0.12) possibly_damaging(0.507) TCGA-D8-A73X-01 4 156753067 156753067 C T ASIC5 Silent p.R412R 0.22 TCGA-D8-A73X-01 4 186425734 186425734 C T PDLIM3 Missense_Mutation p.R267H 0.26 deleterious(0) probably_damaging(0.991) TCGA-D8-A73X-01 5 140168107 140168107 G A PCDHA1 Silent p.A744A 0.11 TCGA-D8-A73X-01 5 147820075 147820075 A G FBXO38 Missense_Mutation p.I1012V 0.29 deleterious(0.01) possibly_damaging(0.902) TCGA-D8-A73X-01 5 179292838 179292838 C G TBC1D9B Missense_Mutation p.E989Q 0.30 tolerated(0.23) benign(0.022) TCGA-D8-A73X-01 5 56168749 56168749 C T MAP3K1 Nonsense_Mutation p.Q535* 0.18 TCGA-D8-A73X-01 5 56184116 56184116 G A MAP3K1 Missense_Mutation p.E1441K 0.60 deleterious(0) probably_damaging(0.996) TCGA-D8-A73X-01 6 152443757 152443757 G A SYNE1 Silent p.S8736S 0.30 TCGA-D8-A73X-01 6 152772241 152772241 C A SYNE1 Missense_Mutation p.D1043Y 0.13 benign(0.367) TCGA-D8-A73X-01 6 34827138 34827138 T C UHRF1BP1 Missense_Mutation p.V1002A 0.16 tolerated(0.22) benign(0.066) TCGA-D8-A73X-01 8 141799584 141799584 A G PTK2 Missense_Mutation p.V389A 0.26 tolerated(0.33) benign(0.287) TCGA-D8-A73X-01 8 42026506 42026506 A G AP3M2 Missense_Mutation p.Y395C 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-D8-A73X-01 X 106844524 106844524 C T FRMPD3 Silent p.G1118G 0.19 TCGA-D8-A73X-01 X 148564220 148564220 C A IDS 3'UTR 0.31 TCGA-D8-A73X-01 X 34675241 34675241 G T TMEM47 5'UTR 0.31 TCGA-E2-A105-01 10 52834557 52834557 G T PRKG1 Missense_Mutation p.Q69H 0.44 tolerated(0.1) benign(0.001) TCGA-E2-A105-01 10 98303695 98303695 T G TM9SF3 Intron 0.40 TCGA-E2-A105-01 10 99619286 99619286 C T GOLGA7B Silent p.S28S 0.46 TCGA-E2-A105-01 11 125525240 125525240 C G CHEK1 3'UTR 0.41 TCGA-E2-A105-01 11 64577330 64577333 AGAC - MEN1 Frame_Shift_Del p.I85Sfs*33 0.59 TCGA-E2-A105-01 12 109831184 109831184 G A MYO1H Missense_Mutation p.G59R 0.35 tolerated(0.14) possibly_damaging(0.778) TCGA-E2-A105-01 12 110778619 110778619 C T ATP2A2 Silent p.G639G 0.35 TCGA-E2-A105-01 12 113357242 113357242 C G OAS1 Intron 0.40 TCGA-E2-A105-01 12 113727991 113727991 G A TPCN1 Missense_Mutation p.V691M 0.04 deleterious(0.04) benign(0.143) TCGA-E2-A105-01 12 122966134 122966134 T C ZCCHC8 Missense_Mutation p.Y318C 0.41 deleterious(0) probably_damaging(0.993) TCGA-E2-A105-01 12 2714315 2714315 A G CACNA1C Missense_Mutation p.N1030S 0.10 deleterious(0) probably_damaging(0.975) TCGA-E2-A105-01 12 46591840 46591840 G C SLC38A1 Missense_Mutation p.R376G 0.50 deleterious(0) probably_damaging(0.999) TCGA-E2-A105-01 12 57918744 57918744 C A MBD6 Missense_Mutation p.N75K 0.38 deleterious_low_confidence(0) unknown(0) TCGA-E2-A105-01 12 57918753 57918754 - TTGGCCCC MBD6 Frame_Shift_Ins p.V82Wfs*4 0.24 TCGA-E2-A105-01 13 103698518 103698518 T C SLC10A2 Missense_Mutation p.K338E 0.41 tolerated(0.8) benign(0) TCGA-E2-A105-01 13 26621019 26621019 G A SHISA2 Missense_Mutation p.R174W 0.33 deleterious(0) probably_damaging(1) TCGA-E2-A105-01 14 20249411 20249411 T G OR4M1 Missense_Mutation p.C310W 0.15 tolerated(0.13) benign(0.016) TCGA-E2-A105-01 14 67610087 67610087 A G GPHN Missense_Mutation p.D586G 0.36 tolerated(0.11) probably_damaging(0.93) TCGA-E2-A105-01 14 94097185 94097185 C T UNC79 Nonsense_Mutation p.R1706* 0.34 TCGA-E2-A105-01 17 11881385 11881385 A G ZNF18 Silent p.V513V 0.64 TCGA-E2-A105-01 17 16593944 16593944 G A CCDC144A Missense_Mutation p.R77H 0.67 deleterious_low_confidence(0.03) benign(0.001) TCGA-E2-A105-01 17 55478762 55478762 T A MSI2 Missense_Mutation p.I112K 0.27 deleterious(0) probably_damaging(0.996) TCGA-E2-A105-01 19 14274041 14274041 T C LPHN1 Missense_Mutation p.Y196C 0.51 tolerated(0.06) benign(0.02) TCGA-E2-A105-01 19 373979 373979 A T THEG Missense_Mutation p.I155N 0.43 deleterious(0) possibly_damaging(0.859) TCGA-E2-A105-01 19 52249706 52249706 G A FPR1 Missense_Mutation p.S181L 0.40 tolerated(0.26) benign(0.309) TCGA-E2-A105-01 19 58384888 58384888 G A ZNF814 Missense_Mutation p.R624C 0.39 deleterious(0) probably_damaging(0.969) TCGA-E2-A105-01 19 8982254 8982254 C T MUC16 Silent p.L14007L 0.40 TCGA-E2-A105-01 1 157105452 157105452 G A ETV3 Missense_Mutation p.S32F 0.40 deleterious(0) probably_damaging(0.99) TCGA-E2-A105-01 1 159021640 159021640 G C IFI16 Missense_Mutation p.V557L 0.20 deleterious(0.01) possibly_damaging(0.774) TCGA-E2-A105-01 1 16202800 16202801 - ATAGAGATCCTCGA SPEN Frame_Shift_Ins p.E175Ifs*196 0.32 TCGA-E2-A105-01 20 3209309 3209309 C T SLC4A11 Missense_Mutation p.S789N 0.46 tolerated(0.69) benign(0.012) TCGA-E2-A105-01 20 36488710 36488710 G A CTNNBL1 Missense_Mutation p.G523R 0.25 tolerated(0.21) probably_damaging(0.999) TCGA-E2-A105-01 20 52644811 52644811 G T BCAS1 Intron 0.21 TCGA-E2-A105-01 20 62309502 62309502 G A RTEL1 Silent p.L332L 0.11 TCGA-E2-A105-01 20 62309642 62309642 G A RTEL1 Missense_Mutation p.G351E 0.05 tolerated(0.47) benign(0.011) TCGA-E2-A105-01 20 62309659 62309659 G C RTEL1 Missense_Mutation p.E357Q 0.05 tolerated(0.34) benign(0.03) TCGA-E2-A105-01 20 62311271 62311271 G A RTEL1 Silent p.L393L 0.13 TCGA-E2-A105-01 20 62312019 62312019 G A RTEL1 Missense_Mutation p.A404T 0.11 tolerated(0.8) benign(0.02) TCGA-E2-A105-01 22 50720419 50720421 GTG - PLXNB2 In_Frame_Del p.T1070del 0.62 TCGA-E2-A105-01 2 174777994 174777999 TCTAAA - SP3 Splice_Site p.X611_splice 0.35 TCGA-E2-A105-01 2 190560903 190560903 G C ANKAR Missense_Mutation p.V506L 0.48 deleterious(0.01) benign(0.101) TCGA-E2-A105-01 2 202093774 202093774 C - CASP10 Frame_Shift_Del p.M514Cfs*50 0.28 TCGA-E2-A105-01 2 234235788 234235788 G C SAG Missense_Mutation p.V153L 0.36 tolerated(0.46) possibly_damaging(0.458) TCGA-E2-A105-01 2 242066754 242066754 C T PASK Missense_Mutation p.G526R 0.47 tolerated(0.63) benign(0.003) TCGA-E2-A105-01 2 74746321 74746321 G T DQX1 Missense_Mutation p.L615I 0.43 tolerated(0.38) probably_damaging(0.966) TCGA-E2-A105-01 3 114057790 114057793 TTTG - ZBTB20 3'UTR 0.40 TCGA-E2-A105-01 3 173998327 173998327 G T NLGN1 Missense_Mutation p.R569L 0.14 deleterious(0) probably_damaging(0.946) TCGA-E2-A105-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.48 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A105-01 3 179066579 179066579 T C MFN1 Intron 0.04 TCGA-E2-A105-01 3 3133823 3133823 C T IL5RA Intron 0.54 TCGA-E2-A105-01 3 49568483 49568483 C T DAG1 Missense_Mutation p.S180F 0.38 tolerated(1) benign(0.001) TCGA-E2-A105-01 3 50597061 50597061 C A C3orf18 3'UTR 0.56 TCGA-E2-A105-01 3 53263320 53263320 C T TKT Missense_Mutation p.G422S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-E2-A105-01 3 81627203 81627203 G A GBE1 Silent p.A497A 0.31 TCGA-E2-A105-01 5 133473797 133473797 C T TCF7 Silent p.Y163Y 0.39 TCGA-E2-A105-01 5 161116329 161116329 C T GABRA6 Silent p.L172L 0.36 TCGA-E2-A105-01 5 32101025 32101025 G A PDZD2 Intron 0.53 TCGA-E2-A105-01 5 72469563 72469563 G A TMEM174 Missense_Mutation p.G165S 0.45 tolerated(0.26) benign(0.11) TCGA-E2-A105-01 6 132792638 132792638 C T STX7 Silent p.E117E 0.29 TCGA-E2-A105-01 6 160908383 160908383 C T LPAL2 RNA 0.31 TCGA-E2-A105-01 6 70733563 70733563 T G COL19A1 Missense_Mutation p.N357K 0.42 tolerated(0.94) unknown(0) TCGA-E2-A105-01 7 4056882 4056882 G A SDK1 Missense_Mutation p.D834N 0.58 deleterious(0) benign(0.402) TCGA-E2-A105-01 7 4056981 4056981 G A SDK1 Missense_Mutation p.G867R 0.59 deleterious(0.02) probably_damaging(0.992) TCGA-E2-A105-01 7 4056982 4056982 G C SDK1 Missense_Mutation p.G867A 0.59 deleterious(0) possibly_damaging(0.75) TCGA-E2-A105-01 8 55539493 55539493 G A RP1 Silent p.L1017L 0.41 TCGA-E2-A105-01 9 131670265 131670265 G C LRRC8A Missense_Mutation p.K274N 0.44 tolerated(0.11) benign(0.06) TCGA-E2-A105-01 9 19126264 19126264 G A PLIN2 Missense_Mutation p.T25M 0.42 deleterious(0) possibly_damaging(0.718) TCGA-E2-A105-01 9 71998865 71998865 A T FAM189A2 Silent p.G209G 0.35 TCGA-E2-A105-01 9 86571300 86571300 G T C9orf64 Missense_Mutation p.A39E 0.40 tolerated(0.27) benign(0.091) TCGA-E2-A105-01 X 12937622 12937622 C T TLR8 Nonsense_Mutation p.Q155* 0.41 TCGA-E2-A105-01 X 147024827 147024827 C T FMR1 Silent p.R484R 0.40 TCGA-E2-A105-01 X 149898600 149898600 T A MTMR1 Missense_Mutation p.L184H 0.32 deleterious(0) possibly_damaging(0.708) TCGA-E2-A105-01 X 26212547 26212547 T G MAGEB6 Missense_Mutation p.V195G 0.38 deleterious(0) benign(0.094) TCGA-E2-A105-01 X 63411643 63411643 G A AMER1 Silent p.F508F 0.38 TCGA-E2-A107-01 12 130833916 130833916 G A PIWIL1 Silent p.Q289Q 0.15 TCGA-E2-A107-01 12 75892695 75892695 A G GLIPR1 Missense_Mutation p.I246M 0.35 deleterious(0.04) benign(0.141) TCGA-E2-A107-01 13 51855360 51855360 G A FAM124A Missense_Mutation p.G573R 0.16 tolerated_low_confidence(0.36) benign(0.009) TCGA-E2-A107-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.62 deleterious(0) probably_damaging(0.999) TCGA-E2-A107-01 15 93527570 93527570 T G CHD2 Missense_Mutation p.F1026C 0.26 deleterious(0) probably_damaging(0.992) TCGA-E2-A107-01 16 1812950 1812950 A G MAPK8IP3 Missense_Mutation p.N613S 0.46 tolerated(1) benign(0.001) TCGA-E2-A107-01 16 68845762 68845762 G A CDH1 Silent p.E336E 0.48 TCGA-E2-A107-01 17 65467644 65467668 ATTACTTTCAATGGCAAAAACCACA - PITPNC1 Intron 0.24 TCGA-E2-A107-01 18 5290905 5290905 C T ZBTB14 Silent p.A434A 0.10 TCGA-E2-A107-01 18 645027 645027 G A CLUL1 Missense_Mutation p.E443K 0.17 tolerated(0.23) possibly_damaging(0.739) TCGA-E2-A107-01 19 14910187 14910187 C T OR7C1 Silent p.T254T 0.26 TCGA-E2-A107-01 1 145441191 145441191 C T TXNIP Silent p.P383P 0.04 TCGA-E2-A107-01 1 166839061 166839061 C T TADA1 Silent p.K35K 0.19 TCGA-E2-A107-01 1 200567540 200567540 T A KIF14 Missense_Mutation p.I792F 0.44 deleterious(0) possibly_damaging(0.873) TCGA-E2-A107-01 1 23636838 23636838 A G HNRNPR 3'UTR 0.40 TCGA-E2-A107-01 1 8422899 8422899 C T RERE Silent p.S582S 0.35 TCGA-E2-A107-01 20 37186945 37186948 CAAA - RALGAPB Frame_Shift_Del p.A1127Vfs*41 0.44 TCGA-E2-A107-01 3 135871094 135871094 G - MSL2 Frame_Shift_Del p.P210Lfs*17 0.22 TCGA-E2-A107-01 4 126372689 126372689 C T FAT4 Silent p.N3506N 0.32 TCGA-E2-A107-01 4 167675497 167675497 A T SPOCK3 Intron 0.21 TCGA-E2-A107-01 4 175224934 175224934 C T CEP44 Silent p.I106I 0.30 TCGA-E2-A107-01 5 134147500 134147500 C A DDX46 Missense_Mutation p.L801I 0.42 tolerated(0.09) benign(0.14) TCGA-E2-A107-01 5 138699536 138699536 C T PAIP2 Silent p.N21N 0.31 TCGA-E2-A107-01 5 140531214 140531214 G A PCDHB6 Missense_Mutation p.R459H 0.26 tolerated_low_confidence(0.08) benign(0.012) TCGA-E2-A107-01 5 43295926 43295926 A G HMGCS1 Missense_Mutation p.M278T 0.25 deleterious(0) benign(0.185) TCGA-E2-A107-01 5 73931474 73931474 A T ENC1 Missense_Mutation p.N279K 0.28 deleterious(0.02) benign(0.066) TCGA-E2-A107-01 6 143759817 143759817 G A ADAT2 Silent p.L37L 0.33 TCGA-E2-A107-01 6 42797341 42797342 - T GLTSCR1L Frame_Shift_Ins p.L425Sfs*40 0.20 TCGA-E2-A107-01 7 103179598 103179598 G A RELN Silent p.D2369D 0.20 TCGA-E2-A107-01 7 150656940 150656940 G T KCNH2 Intron 0.15 TCGA-E2-A107-01 7 151810410 151810410 G C GALNT11 Missense_Mutation p.G387A 0.39 deleterious(0) probably_damaging(0.999) TCGA-E2-A107-01 8 124265786 124265786 C T ZHX1 Missense_Mutation p.D801N 0.12 deleterious(0.01) probably_damaging(1) TCGA-E2-A107-01 8 71050435 71050435 C T NCOA2 Intron 0.30 TCGA-E2-A107-01 9 18574047 18574047 G A ADAMTSL1 Missense_Mutation p.G86D 0.29 tolerated(0.05) probably_damaging(1) TCGA-E2-A107-01 9 20912930 20912931 - A FOCAD Frame_Shift_Ins p.S931Kfs*8 0.31 TCGA-E2-A107-01 X 101971061 101971061 G A GPRASP2 Missense_Mutation p.A422T 0.41 tolerated(0.36) benign(0) TCGA-E2-A107-01 X 108926449 108926449 C T ACSL4 Silent p.K89K 0.41 TCGA-E2-A107-01 X 154508608 154508608 A T CLIC2 Missense_Mutation p.S138T 0.14 tolerated(0.09) benign(0.015) TCGA-E2-A107-01 X 38182684 38182684 G A RPGR Missense_Mutation p.S41L 0.31 probably_damaging(0.937) TCGA-E2-A107-01 X 54337552 54337552 G A WNK3 Missense_Mutation p.T237M 0.40 deleterious(0) probably_damaging(0.998) TCGA-E2-A107-01 X 74637024 74637024 G T ZDHHC15 Missense_Mutation p.P289T 0.29 tolerated(0.15) benign(0.004) TCGA-E2-A108-01 10 102267771 102267771 C T SEC31B Missense_Mutation p.R178Q 0.08 tolerated(0.11) benign(0.011) TCGA-E2-A108-01 10 104814140 104814140 C G CNNM2 Missense_Mutation p.S607C 0.06 deleterious(0) probably_damaging(0.997) TCGA-E2-A108-01 10 50121853 50121853 C A LRRC18 Missense_Mutation p.E116D 0.05 tolerated(0.09) benign(0.41) TCGA-E2-A108-01 10 6262763 6262763 G A PFKFB3 Missense_Mutation p.E256K 0.16 probably_damaging(0.999) TCGA-E2-A108-01 10 76468160 76468160 G C ADK Missense_Mutation p.R349T 0.05 deleterious(0.03) benign(0.045) TCGA-E2-A108-01 10 79784369 79784369 G C POLR3A Missense_Mutation p.Q195E 0.12 tolerated(0.91) benign(0.002) TCGA-E2-A108-01 10 95930961 95930966 CCAATT - PLCE1 In_Frame_Del p.S508_N509del 0.15 TCGA-E2-A108-01 11 123848012 123848012 G T OR10S1 Nonsense_Mutation p.Y129* 0.10 TCGA-E2-A108-01 11 27379074 27379074 G C CCDC34 Nonsense_Mutation p.S125* 0.12 TCGA-E2-A108-01 11 55418866 55418866 C A OR4S2 Missense_Mutation p.Q163K 0.07 deleterious(0.04) possibly_damaging(0.545) TCGA-E2-A108-01 11 57076132 57076132 C G TNKS1BP1 Missense_Mutation p.Q1351H 0.14 tolerated(0.07) benign(0.002) TCGA-E2-A108-01 11 62414645 62414645 G T INTS5 Missense_Mutation p.F969L 0.12 tolerated(0.15) probably_damaging(0.99) TCGA-E2-A108-01 11 62415402 62415402 G A INTS5 Missense_Mutation p.S717L 0.11 tolerated(0.26) benign(0.021) TCGA-E2-A108-01 11 62417233 62417233 G C INTS5 Missense_Mutation p.P107A 0.11 tolerated_low_confidence(0.75) benign(0.01) TCGA-E2-A108-01 11 62430482 62430482 G A C11orf48 3'UTR 0.11 TCGA-E2-A108-01 11 62489702 62489702 G A HNRNPUL2 Nonsense_Mutation p.Q416* 0.18 TCGA-E2-A108-01 11 62521459 62521459 G A ZBTB3 Missense_Mutation p.R26C 0.11 tolerated_low_confidence(0.08) benign(0.092) TCGA-E2-A108-01 11 65391115 65391115 G T PCNXL3 Missense_Mutation p.K837N 0.10 deleterious(0) probably_damaging(0.986) TCGA-E2-A108-01 11 77991866 77991866 G A GAB2 Missense_Mutation p.H53Y 0.05 deleterious(0) possibly_damaging(0.604) TCGA-E2-A108-01 11 77991918 77991918 C G GAB2 Silent p.R35R 0.07 TCGA-E2-A108-01 12 10954804 10954804 C T TAS2R7 Missense_Mutation p.M122I 0.08 tolerated(0.09) benign(0.011) TCGA-E2-A108-01 12 111066828 111066828 G C TCTN1 Intron 0.11 TCGA-E2-A108-01 12 112638504 112638504 G A HECTD4 Silent p.G2689G 0.06 TCGA-E2-A108-01 12 120594723 120594723 C T GCN1L1 Missense_Mutation p.R1054H 0.10 benign(0.256) TCGA-E2-A108-01 12 42862485 42862485 A C PRICKLE1 Missense_Mutation p.I177M 0.08 deleterious(0.01) possibly_damaging(0.507) TCGA-E2-A108-01 12 56650806 56650806 C T ANKRD52 Missense_Mutation p.R85Q 0.08 tolerated(0.32) possibly_damaging(0.597) TCGA-E2-A108-01 12 56676225 56676225 G A CS Silent p.I189I 0.08 TCGA-E2-A108-01 12 64891767 64891767 G A TBK1 Missense_Mutation p.E696K 0.04 deleterious(0.01) possibly_damaging(0.557) TCGA-E2-A108-01 12 69113429 69113429 G A NUP107 Missense_Mutation p.E416K 0.09 deleterious(0.04) possibly_damaging(0.734) TCGA-E2-A108-01 12 69250306 69250306 G C CPM Missense_Mutation p.L415V 0.05 deleterious(0.02) probably_damaging(0.986) TCGA-E2-A108-01 12 71148214 71148214 G C PTPRR Intron 0.19 TCGA-E2-A108-01 12 9070338 9070338 C G PHC1 Missense_Mutation p.S22C 0.09 deleterious(0.01) unknown(0) TCGA-E2-A108-01 12 93803717 93803717 C G UBE2N 3'UTR 0.06 TCGA-E2-A108-01 13 20641001 20641001 G A ZMYM2 Missense_Mutation p.R1048K 0.11 tolerated(0.3) possibly_damaging(0.452) TCGA-E2-A108-01 13 20657091 20657091 T C ZMYM2 Missense_Mutation p.W1247R 0.19 tolerated(0.06) possibly_damaging(0.756) TCGA-E2-A108-01 13 25268604 25268604 C G ATP12A Nonsense_Mutation p.S473* 0.06 TCGA-E2-A108-01 13 32811934 32811934 G A FRY Missense_Mutation p.D2077N 0.16 deleterious(0) possibly_damaging(0.848) TCGA-E2-A108-01 13 43469228 43469229 - AA EPSTI1 Frame_Shift_Ins p.L289Ffs*23 0.08 TCGA-E2-A108-01 13 52976770 52976770 C T THSD1 5'UTR 0.10 TCGA-E2-A108-01 14 22038296 22038296 T A OR10G3 Missense_Mutation p.T194S 0.05 tolerated(1) benign(0.019) TCGA-E2-A108-01 14 51190367 51190367 G A NIN 3'Flank 0.04 TCGA-E2-A108-01 14 65263386 65263386 C T SPTB Silent p.L410L 0.11 TCGA-E2-A108-01 14 67779352 67779352 C G MPP5 Missense_Mutation p.Q384E 0.07 deleterious(0.01) benign(0.422) TCGA-E2-A108-01 15 42564268 42564268 G C TMEM87A Missense_Mutation p.F66L 0.10 tolerated(0.65) benign(0.001) TCGA-E2-A108-01 15 43244537 43244537 C G UBR1 Missense_Mutation p.E1649Q 0.11 tolerated(0.21) possibly_damaging(0.859) TCGA-E2-A108-01 15 63933744 63933744 C T HERC1 Silent p.L3844L 0.05 TCGA-E2-A108-01 15 78825858 78825858 C G HYKK Missense_Mutation p.S323C 0.10 deleterious(0) possibly_damaging(0.687) TCGA-E2-A108-01 16 11782228 11782228 C A TXNDC11 Missense_Mutation p.Q658H 0.12 tolerated(0.39) benign(0.011) TCGA-E2-A108-01 16 1887860 1887860 A G MEIOB Silent p.F410F 0.04 TCGA-E2-A108-01 16 2335538 2335538 C T ABCA3 Missense_Mutation p.V1130M 0.07 tolerated(0.13) benign(0.026) TCGA-E2-A108-01 16 30037989 30037989 C G FAM57B Missense_Mutation p.E129Q 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-E2-A108-01 16 30596468 30596468 G A ZNF785 Silent p.F103F 0.12 TCGA-E2-A108-01 16 67325298 67325298 G T KCTD19 Missense_Mutation p.L827M 0.13 deleterious(0) probably_damaging(0.999) TCGA-E2-A108-01 16 70928407 70928407 C A HYDIN Nonsense_Mutation p.E3065* 0.09 TCGA-E2-A108-01 16 81167208 81167208 G C PKD1L2 RNA 0.10 TCGA-E2-A108-01 17 28384724 28384724 C A EFCAB5 Missense_Mutation p.S799Y 0.08 deleterious(0) probably_damaging(0.975) TCGA-E2-A108-01 17 33806966 33806966 T C SLFN12L Missense_Mutation p.Y88C 0.08 deleterious(0) probably_damaging(0.997) TCGA-E2-A108-01 17 40849571 40849571 G C CNTNAP1 Splice_Site p.X1190_splice 0.11 TCGA-E2-A108-01 17 42264979 42264979 C T TMUB2 Intron 0.10 TCGA-E2-A108-01 17 46189979 46189979 A G SNX11 Missense_Mutation p.E29G 0.16 deleterious(0.01) probably_damaging(0.911) TCGA-E2-A108-01 17 56356395 56356395 G A MPO Nonsense_Mutation p.Q287* 0.16 TCGA-E2-A108-01 17 61417516 61417516 G A TANC2 Missense_Mutation p.E470K 0.05 deleterious(0) probably_damaging(0.911) TCGA-E2-A108-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.11 tolerated(0.13) possibly_damaging(0.631) TCGA-E2-A108-01 18 2960806 2960806 C T LPIN2 Silent p.V11V 0.24 TCGA-E2-A108-01 18 31324829 31324829 C A ASXL3 Missense_Mutation p.H1673N 0.05 benign(0.03) TCGA-E2-A108-01 18 56587315 56587315 C G ZNF532 Missense_Mutation p.P599R 0.08 deleterious(0) probably_damaging(1) TCGA-E2-A108-01 18 7032992 7032992 G C LAMA1 Silent p.T718T 0.10 TCGA-E2-A108-01 19 47425257 47425257 C T ARHGAP35 Missense_Mutation p.H1109Y 0.07 deleterious(0.01) possibly_damaging(0.882) TCGA-E2-A108-01 19 4960761 4960761 C A UHRF1 RNA 0.10 TCGA-E2-A108-01 19 51920033 51920033 G C SIGLEC10 Nonsense_Mutation p.S198* 0.10 TCGA-E2-A108-01 19 51920140 51920140 G A SIGLEC10 Silent p.V162V 0.07 TCGA-E2-A108-01 19 52003413 52003413 C T SIGLEC12 Nonsense_Mutation p.W190* 0.04 TCGA-E2-A108-01 19 55086977 55086977 G A LILRA2 Missense_Mutation p.E304K 0.16 tolerated(0.09) benign(0.027) TCGA-E2-A108-01 1 110587681 110587681 G C STRIP1 Missense_Mutation p.S466T 0.04 deleterious(0.04) probably_damaging(0.982) TCGA-E2-A108-01 1 113052034 113052034 G C WNT2B Silent p.L50L 0.16 TCGA-E2-A108-01 1 114636379 114636379 C T SYT6 3'UTR 0.10 TCGA-E2-A108-01 1 114640500 114640500 C T SYT6 Splice_Site p.X370_splice 0.16 TCGA-E2-A108-01 1 114641841 114641841 C T SYT6 Silent p.K328K 0.10 TCGA-E2-A108-01 1 115600203 115600203 G A TSPAN2 Silent p.S157S 0.08 TCGA-E2-A108-01 1 117568312 117568312 G C CD101 Missense_Mutation p.L870F 0.09 deleterious(0.02) possibly_damaging(0.824) TCGA-E2-A108-01 1 150939642 150939642 T C CERS2 Missense_Mutation p.I217V 0.12 tolerated(0.1) possibly_damaging(0.851) TCGA-E2-A108-01 1 152058642 152058642 C G TCHHL1 Missense_Mutation p.E506Q 0.10 deleterious(0.03) possibly_damaging(0.87) TCGA-E2-A108-01 1 155311856 155311856 G A ASH1L Silent p.I2777I 0.11 TCGA-E2-A108-01 1 160582299 160582299 C T SLAMF1 Silent p.E312E 0.12 TCGA-E2-A108-01 1 162829308 162829308 C T C1orf110 Silent p.V43V 0.05 TCGA-E2-A108-01 1 169510434 169510434 G C F5 Silent p.L1298L 0.03 TCGA-E2-A108-01 1 17264157 17264157 A T CROCC Silent p.A405A 0.08 TCGA-E2-A108-01 1 181767528 181767528 G A CACNA1E Missense_Mutation p.R2167Q 0.14 deleterious(0) possibly_damaging(0.885) TCGA-E2-A108-01 1 184686738 184686738 C G EDEM3 Missense_Mutation p.R394T 0.11 deleterious(0.03) benign(0.395) TCGA-E2-A108-01 1 190195266 190195266 G A BRINP3 Missense_Mutation p.L303F 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-E2-A108-01 1 197070580 197070580 C G ASPM Missense_Mutation p.E2601Q 0.04 tolerated(0.61) benign(0.112) TCGA-E2-A108-01 1 221913018 221913018 G C DUSP10 Silent p.L23L 0.11 TCGA-E2-A108-01 1 22408243 22408243 T C CDC42 Missense_Mutation p.M45T 0.03 tolerated(0.18) probably_damaging(0.912) TCGA-E2-A108-01 1 231474280 231474280 C T SPRTN Nonsense_Mutation p.Q51* 0.12 TCGA-E2-A108-01 1 236746159 236746159 C G HEATR1 Missense_Mutation p.W813C 0.11 deleterious(0) probably_damaging(0.996) TCGA-E2-A108-01 1 236883479 236883479 A G ACTN2 Missense_Mutation p.I146V 0.07 deleterious(0.01) probably_damaging(0.959) TCGA-E2-A108-01 1 24086048 24086048 A C TCEB3 Missense_Mutation p.R794S 0.10 deleterious(0.05) benign(0.243) TCGA-E2-A108-01 1 247150838 247150838 C A ZNF695 Nonsense_Mutation p.E327* 0.14 TCGA-E2-A108-01 1 248028177 248028177 G A TRIM58 Silent p.L229L 0.21 TCGA-E2-A108-01 1 32193069 32193069 G C BAI2 Silent p.A1570A 0.10 TCGA-E2-A108-01 1 38484231 38484231 G C UTP11L Missense_Mutation p.K108N 0.05 deleterious(0) probably_damaging(0.972) TCGA-E2-A108-01 1 41474477 41474477 C G CTPS1 Silent p.V487V 0.05 TCGA-E2-A108-01 1 52264041 52264041 C T NRD1 Missense_Mutation p.M896I 0.04 tolerated(0.19) benign(0.017) TCGA-E2-A108-01 1 8073993 8073993 G A ERRFI1 Silent p.L222L 0.07 TCGA-E2-A108-01 20 32250250 32250250 C A C20orf144 Silent p.L33L 0.09 TCGA-E2-A108-01 20 34778680 34778680 T G EPB41L1 Missense_Mutation p.S421A 0.10 tolerated(0.06) benign(0.145) TCGA-E2-A108-01 20 3669152 3669152 G C SIGLEC1 3'UTR 0.08 TCGA-E2-A108-01 20 37547041 37547041 C T PPP1R16B Missense_Mutation p.T479M 0.15 deleterious(0) probably_damaging(0.999) TCGA-E2-A108-01 20 44750513 44750513 C T CD40 Nonsense_Mutation p.Q36* 0.10 TCGA-E2-A108-01 20 45905176 45905176 C T ZMYND8 Missense_Mutation p.M454I 0.12 deleterious_low_confidence(0.01) benign(0.036) TCGA-E2-A108-01 20 55020990 55020990 C T CASS4 Missense_Mutation p.S165L 0.06 deleterious(0.03) benign(0.071) TCGA-E2-A108-01 20 56886164 56886164 C G RAB22A Missense_Mutation p.I34M 0.06 tolerated(0.1) benign(0.358) TCGA-E2-A108-01 21 17183503 17183503 G C USP25 Missense_Mutation p.R302T 0.07 tolerated(0.59) benign(0.007) TCGA-E2-A108-01 21 30357222 30357222 C A LTN1 Nonsense_Mutation p.E169* 0.05 TCGA-E2-A108-01 22 22868553 22868553 C G ZNF280A Missense_Mutation p.E468Q 0.06 deleterious(0.01) possibly_damaging(0.901) TCGA-E2-A108-01 22 22989629 22989629 C T GGTLC2 Missense_Mutation p.H127Y 0.09 tolerated(0.72) benign(0.028) TCGA-E2-A108-01 22 32647765 32647765 C T SLC5A4 Missense_Mutation p.E102K 0.09 deleterious(0) probably_damaging(0.999) TCGA-E2-A108-01 22 45244917 45244917 A G ARHGAP8 Missense_Mutation p.Y407C 0.11 deleterious(0) probably_damaging(1) TCGA-E2-A108-01 2 136505878 136505878 G A UBXN4 Missense_Mutation p.D42N 0.05 tolerated(0.12) benign(0.111) TCGA-E2-A108-01 2 149243339 149243339 G C MBD5 Missense_Mutation p.L958F 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-E2-A108-01 2 152112244 152112244 T C RBM43 Missense_Mutation p.N6S 0.09 tolerated(0.11) possibly_damaging(0.487) TCGA-E2-A108-01 2 172782052 172782052 G C HAT1 Missense_Mutation p.G5R 0.06 deleterious_low_confidence(0.05) benign(0.021) TCGA-E2-A108-01 2 175300832 175300832 C T GPR155 3'UTR 0.08 TCGA-E2-A108-01 2 179260315 179260315 C T OSBPL6 3'UTR 0.06 TCGA-E2-A108-01 2 233633146 233633146 C T KCNJ13 Missense_Mutation p.E280K 0.07 tolerated(0.13) probably_damaging(0.965) TCGA-E2-A108-01 2 49217745 49217745 G A FSHR Missense_Mutation p.P136S 0.11 deleterious(0) probably_damaging(0.995) TCGA-E2-A108-01 2 70441620 70441620 G A TIA1 Nonsense_Mutation p.Q299* 0.04 TCGA-E2-A108-01 2 73677476 73677476 G C ALMS1 Missense_Mutation p.Q1273H 0.09 probably_damaging(0.969) TCGA-E2-A108-01 2 90121676 90121676 G A IGKV1D-17 Missense_Mutation p.A7T 0.06 tolerated(0.58) benign(0.007) TCGA-E2-A108-01 2 96959214 96959214 G C SNRNP200 Missense_Mutation p.P626A 0.06 deleterious(0.01) possibly_damaging(0.85) TCGA-E2-A108-01 2 97302910 97302910 G A KANSL3 5'UTR 0.08 TCGA-E2-A108-01 3 108214635 108214635 A G MYH15 Missense_Mutation p.S255P 0.04 deleterious(0) probably_damaging(1) TCGA-E2-A108-01 3 113514749 113514749 C G ATP6V1A Missense_Mutation p.S418C 0.08 deleterious(0) probably_damaging(0.951) TCGA-E2-A108-01 3 121410077 121410077 C G GOLGB1 Missense_Mutation p.E2712Q 0.04 probably_damaging(0.999) TCGA-E2-A108-01 3 142090086 142090086 C G XRN1 Missense_Mutation p.E1021D 0.05 deleterious(0.05) benign(0.068) TCGA-E2-A108-01 3 14561740 14561740 T G GRIP2 RNA 0.07 TCGA-E2-A108-01 3 154021197 154021198 - A DHX36 Frame_Shift_Ins p.N380* 0.09 TCGA-E2-A108-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.09 tolerated(0.05) possibly_damaging(0.704) TCGA-E2-A108-01 3 185867838 185867838 C G DGKG 3'UTR 0.11 TCGA-E2-A108-01 3 52431868 52431868 C G DNAH1 Missense_Mutation p.S3978C 0.07 probably_damaging(0.95) TCGA-E2-A108-01 4 123329074 123329074 G A ADAD1 Missense_Mutation p.E246K 0.09 tolerated(0.07) possibly_damaging(0.562) TCGA-E2-A108-01 4 128564824 128564824 G C INTU Missense_Mutation p.D99H 0.10 tolerated(0.11) probably_damaging(0.924) TCGA-E2-A108-01 4 184628080 184628080 C T TRAPPC11 Missense_Mutation p.S1059L 0.07 deleterious(0) probably_damaging(0.954) TCGA-E2-A108-01 4 38775802 38775802 T C TLR10 Silent p.E470E 0.15 TCGA-E2-A108-01 4 39505561 39505561 G A UGDH Silent p.A436A 0.06 TCGA-E2-A108-01 4 42964964 42964964 G A GRXCR1 Missense_Mutation p.R147H 0.14 tolerated(0.13) probably_damaging(0.999) TCGA-E2-A108-01 4 81974505 81974505 A T BMP3 Nonsense_Mutation p.K412* 0.06 TCGA-E2-A108-01 5 141511786 141511786 A T NDFIP1 Missense_Mutation p.D54V 0.11 deleterious(0) possibly_damaging(0.624) TCGA-E2-A108-01 5 146703466 146703466 C G STK32A Missense_Mutation p.S89C 0.09 deleterious(0.03) probably_damaging(1) TCGA-E2-A108-01 5 39377187 39377187 G A DAB2 Missense_Mutation p.P568S 0.06 tolerated(0.25) benign(0.011) TCGA-E2-A108-01 6 132271109 132271109 C G CTGF Missense_Mutation p.D245H 0.06 tolerated(0.12) benign(0.005) TCGA-E2-A108-01 6 139363893 139363893 C G ABRACL Silent p.L33L 0.04 TCGA-E2-A108-01 6 154831311 154831311 C G CNKSR3 5'UTR 0.18 TCGA-E2-A108-01 6 30919979 30919979 C G DPCR1 Silent p.V1246V 0.07 TCGA-E2-A108-01 6 54173459 54173459 G A TINAG Silent p.R37R 0.05 TCGA-E2-A108-01 6 6145822 6145822 T A F13A1 3'UTR 0.09 TCGA-E2-A108-01 6 99860583 99860583 A G PNISR Missense_Mutation p.W41R 0.12 deleterious(0) probably_damaging(0.999) TCGA-E2-A108-01 7 117417611 117417611 C T CTTNBP2 Missense_Mutation p.R911K 0.04 tolerated(1) benign(0.001) TCGA-E2-A108-01 7 129938654 129938654 C T CPA4 Missense_Mutation p.S46L 0.04 tolerated(0.44) benign(0.005) TCGA-E2-A108-01 7 130144966 130144966 G C MEST 3'UTR 0.07 TCGA-E2-A108-01 7 155093316 155093316 C T INSIG1 Silent p.L151L 0.04 TCGA-E2-A108-01 7 23729011 23729011 C G FAM221A Silent p.P121P 0.19 TCGA-E2-A108-01 7 35242172 35242172 G C TBX20 Missense_Mutation p.S405C 0.08 deleterious_low_confidence(0.02) benign(0.258) TCGA-E2-A108-01 7 82997064 82997064 G A SEMA3E Silent p.F722F 0.05 TCGA-E2-A108-01 8 142231823 142231823 G A SLC45A4 Missense_Mutation p.P44S 0.08 deleterious(0) possibly_damaging(0.662) TCGA-E2-A108-01 8 20067922 20067922 C G ATP6V1B2 Silent p.L119L 0.10 TCGA-E2-A108-01 8 27293815 27293815 C A PTK2B Missense_Mutation p.L431I 0.14 tolerated(0.75) possibly_damaging(0.687) TCGA-E2-A108-01 8 37602118 37602118 G A ERLIN2 Missense_Mutation p.D110N 0.06 tolerated(0.12) benign(0.274) TCGA-E2-A108-01 8 37609224 37609224 G A ERLIN2 Missense_Mutation p.E244K 0.08 tolerated(0.07) benign(0.079) TCGA-E2-A108-01 8 39564360 39564360 G C ADAM18 Missense_Mutation p.D652H 0.10 tolerated(0.08) benign(0.097) TCGA-E2-A108-01 8 68956728 68956728 G A PREX2 Silent p.L282L 0.04 TCGA-E2-A108-01 8 71646172 71646172 C A XKR9 Missense_Mutation p.T212K 0.03 deleterious(0) probably_damaging(0.999) TCGA-E2-A108-01 8 82614909 82614909 C G ZFAND1 3'UTR 0.12 TCGA-E2-A108-01 8 91013654 91013654 C G DECR1 5'UTR 0.11 TCGA-E2-A108-01 8 99039792 99039792 C G MATN2 Silent p.L697L 0.06 TCGA-E2-A108-01 9 102677570 102677570 A G STX17 Missense_Mutation p.I17V 0.12 tolerated(0.31) benign(0.021) TCGA-E2-A108-01 9 125863863 125863863 G C RABGAP1 Missense_Mutation p.E970Q 0.06 tolerated(0.13) benign(0.214) TCGA-E2-A108-01 9 33034218 33034218 G A DNAJA1 Missense_Mutation p.M216I 0.08 deleterious(0) benign(0.142) TCGA-E2-A108-01 9 37783984 37783984 C G EXOSC3 Missense_Mutation p.G134A 0.10 deleterious(0) probably_damaging(1) TCGA-E2-A108-01 9 77631273 77631273 T C C9orf41 Silent p.R167R 0.15 TCGA-E2-A108-01 X 132833971 132833971 A T GPC3 Nonsense_Mutation p.L396* 0.07 TCGA-E2-A108-01 X 19764450 19764450 C G SH3KBP1 Missense_Mutation p.R91T 0.06 tolerated(0.06) benign(0.076) TCGA-E2-A108-01 X 38182135 38182135 G A RPGR Missense_Mutation p.S73L 0.06 benign(0.261) TCGA-E2-A108-01 X 49107750 49107750 C G FOXP3 3'UTR 0.09 TCGA-E2-A108-01 X 49107788 49107788 C T FOXP3 3'UTR 0.10 TCGA-E2-A108-01 X 53430747 53430747 C G SMC1A Missense_Mutation p.E759Q 0.13 tolerated(0.71) benign(0.089) TCGA-E2-A108-01 X 68381974 68381974 C T PJA1 Missense_Mutation p.E370K 0.08 deleterious(0) probably_damaging(0.999) TCGA-E2-A108-01 X 70357410 70357410 G C MED12 Missense_Mutation p.Q1917H 0.07 possibly_damaging(0.601) TCGA-E2-A108-01 X 70793730 70793730 T C OGT 3'UTR 0.16 TCGA-E2-A109-01 10 134997384 134997384 C T KNDC1 Silent p.I172I 0.07 TCGA-E2-A109-01 10 16878371 16878371 T A CUBN Missense_Mutation p.N3348I 0.39 deleterious(0.01) possibly_damaging(0.824) TCGA-E2-A109-01 10 75672712 75672712 G A PLAU Missense_Mutation p.G75D 0.39 deleterious(0) probably_damaging(0.997) TCGA-E2-A109-01 10 91198597 91198597 C T SLC16A12 Silent p.Q264Q 0.47 TCGA-E2-A109-01 12 109835562 109835562 G A MYO1H Missense_Mutation p.R156Q 0.42 deleterious(0) possibly_damaging(0.828) TCGA-E2-A109-01 12 124887087 124887087 C T NCOR2 Silent p.Q501Q 0.10 TCGA-E2-A109-01 12 45810499 45810499 G A ANO6 Missense_Mutation p.V698I 0.34 tolerated(0.27) possibly_damaging(0.787) TCGA-E2-A109-01 14 24910883 24910883 C - SDR39U1 Frame_Shift_Del p.V109* 0.26 TCGA-E2-A109-01 14 33290718 33290718 G A AKAP6 Silent p.E1233E 0.17 TCGA-E2-A109-01 14 37050102 37050102 C T NKX2-8 3'UTR 0.59 TCGA-E2-A109-01 15 76073206 76073206 G A RN7SL319P 5'Flank 0.22 TCGA-E2-A109-01 15 77067311 77067311 G C SCAPER Missense_Mutation p.P307R 0.35 deleterious(0.03) benign(0.24) TCGA-E2-A109-01 16 18542797 18542797 A C NOMO2 Missense_Mutation p.S510A 0.26 tolerated(0.51) benign(0.012) TCGA-E2-A109-01 16 48396255 48396255 T C SIAH1 Missense_Mutation p.T60A 0.20 tolerated(0.2) benign(0.005) TCGA-E2-A109-01 16 50334759 50334759 C T ADCY7 Missense_Mutation p.R404W 0.25 deleterious(0) probably_damaging(1) TCGA-E2-A109-01 16 64984798 64984798 G A CDH11 Missense_Mutation p.T589I 0.09 deleterious(0.01) benign(0.004) TCGA-E2-A109-01 16 89294298 89294298 A G ZNF778 Silent p.E506E 0.44 TCGA-E2-A109-01 16 89804566 89804566 C T ZNF276 Missense_Mutation p.A586V 0.28 deleterious(0.03) possibly_damaging(0.535) TCGA-E2-A109-01 17 25637136 25637136 C G WSB1 Missense_Mutation p.R312G 0.17 tolerated(0.56) benign(0.003) TCGA-E2-A109-01 17 47389335 47389335 T C ZNF652 Missense_Mutation p.K373R 0.09 deleterious(0.03) probably_damaging(0.967) TCGA-E2-A109-01 17 48431013 48431013 G A XYLT2 Missense_Mutation p.R53Q 0.03 tolerated_low_confidence(0.47) benign(0.008) TCGA-E2-A109-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.71 deleterious(0) probably_damaging(1) TCGA-E2-A109-01 18 32720267 32720267 C A MAPRE2 Missense_Mutation p.H306Q 0.20 tolerated(0.52) unknown(0) TCGA-E2-A109-01 18 7033069 7033069 C A LAMA1 Missense_Mutation p.A693S 0.32 deleterious(0) probably_damaging(0.992) TCGA-E2-A109-01 19 14992035 14992035 T C OR7A17 Missense_Mutation p.I45V 0.12 deleterious_low_confidence(0.01) benign(0.226) TCGA-E2-A109-01 19 19932498 19932498 G A ZNF506 5'UTR 0.24 TCGA-E2-A109-01 19 44254812 44254812 G T SMG9 Missense_Mutation p.P28T 0.72 tolerated_low_confidence(0.06) benign(0.023) TCGA-E2-A109-01 19 54930398 54930398 C A TTYH1 Missense_Mutation p.P75T 0.34 tolerated(0.36) possibly_damaging(0.897) TCGA-E2-A109-01 19 55451245 55451245 C T NLRP7 Silent p.Q314Q 0.28 TCGA-E2-A109-01 19 56321131 56321131 C T NLRP11 Missense_Mutation p.G282E 0.23 tolerated(1) benign(0.001) TCGA-E2-A109-01 1 109649741 109649741 G T C1orf194 Missense_Mutation p.P56T 0.22 deleterious(0) probably_damaging(0.981) TCGA-E2-A109-01 1 115276687 115276687 G C CSDE1 Missense_Mutation p.H258D 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-E2-A109-01 1 162351928 162351929 GA - C1orf226 Frame_Shift_Del p.T123Rfs*15 0.31 TCGA-E2-A109-01 1 17964425 17964425 A G ARHGEF10L Missense_Mutation p.Q657R 0.24 deleterious(0) possibly_damaging(0.476) TCGA-E2-A109-01 1 204167479 204167479 G A GOLT1A 3'UTR 0.12 TCGA-E2-A109-01 1 205492722 205492722 G A CDK18 Missense_Mutation p.R81Q 0.44 tolerated_low_confidence(0.11) benign(0.02) TCGA-E2-A109-01 1 21585236 21585238 AGA - ECE1 In_Frame_Del p.F237del 0.61 TCGA-E2-A109-01 22 51018482 51018482 T G CHKB Missense_Mutation p.E283A 0.13 deleterious(0) probably_damaging(1) TCGA-E2-A109-01 2 103001345 103001345 C T IL18R1 Silent p.N232N 0.50 TCGA-E2-A109-01 2 168725537 168725537 T C B3GALT1 5'UTR 0.48 TCGA-E2-A109-01 2 234681013 234681013 C T UGT1A4 Silent p.G471G 0.47 TCGA-E2-A109-01 2 241535825 241535825 C T CAPN10 Silent p.H456H 0.39 TCGA-E2-A109-01 2 27806578 27806579 - A ZNF512 Frame_Shift_Ins p.N30Efs*2 0.29 TCGA-E2-A109-01 2 31605877 31605877 T A XDH Missense_Mutation p.K343M 0.42 deleterious(0) probably_damaging(0.98) TCGA-E2-A109-01 2 56149540 56149540 C T EFEMP1 Silent p.L12L 0.14 TCGA-E2-A109-01 3 126062722 126062722 C A KLF15 Nonsense_Mutation p.E367* 0.48 TCGA-E2-A109-01 3 137484051 137484051 C T SOX14 Missense_Mutation p.A142V 0.23 tolerated(0.27) benign(0.029) TCGA-E2-A109-01 3 157823481 157823481 C T SHOX2 Silent p.P111P 0.39 TCGA-E2-A109-01 3 170102343 170102343 A G SKIL Missense_Mutation p.K407E 0.39 deleterious(0.01) benign(0.411) TCGA-E2-A109-01 3 183756031 183756031 C T HTR3D Intron 0.19 TCGA-E2-A109-01 3 189681772 189681772 G C LEPREL1 Missense_Mutation p.T670S 0.25 deleterious(0) probably_damaging(0.999) TCGA-E2-A109-01 3 47891166 47891166 G C DHX30 Missense_Mutation p.V1080L 0.40 tolerated(0.11) benign(0.137) TCGA-E2-A109-01 3 49758302 49758302 C T RNF123 Missense_Mutation p.S1238F 0.18 deleterious(0.03) possibly_damaging(0.535) TCGA-E2-A109-01 4 177113974 177113974 A - SPATA4 Frame_Shift_Del p.F164Lfs*2 0.26 TCGA-E2-A109-01 4 3255096 3255096 G A MSANTD1 Silent p.S161S 0.21 TCGA-E2-A109-01 4 62936207 62936207 C A LPHN3 Missense_Mutation p.P1331T 0.24 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-E2-A109-01 5 140590645 140590645 C A PCDHB12 Silent p.V722V 0.40 TCGA-E2-A109-01 5 156456795 156456795 G A HAVCR1 Silent p.V348V 0.13 TCGA-E2-A109-01 5 159992485 159992485 C A ATP10B Missense_Mutation p.R1454L 0.57 deleterious_low_confidence(0) benign(0.25) TCGA-E2-A109-01 5 80659681 80659681 T G ACOT12 Missense_Mutation p.M96L 0.09 tolerated(1) benign(0.012) TCGA-E2-A109-01 6 165749696 165749696 C A PDE10A Missense_Mutation p.G728V 0.31 deleterious(0) probably_damaging(0.999) TCGA-E2-A109-01 6 26124426 26124426 A G HIST1H2AC 5'Flank 0.42 TCGA-E2-A109-01 7 128542848 128542848 G T AC025594.1 5'Flank 0.17 TCGA-E2-A109-01 7 141673510 141673510 C A TAS2R38 5'UTR 0.64 TCGA-E2-A109-01 7 48506594 48506594 G A ABCA13 Missense_Mutation p.R4286Q 0.33 benign(0.019) TCGA-E2-A109-01 7 71036313 71036313 T A WBSCR17 Missense_Mutation p.F336I 0.33 deleterious(0.02) benign(0.324) TCGA-E2-A109-01 7 88965288 88965288 C T ZNF804B Missense_Mutation p.P998S 0.47 tolerated(0.26) benign(0.003) TCGA-E2-A109-01 8 100115204 100115204 C A VPS13B Silent p.R146R 0.08 TCGA-E2-A109-01 8 134232988 134232988 C T WISP1 Missense_Mutation p.R172C 0.41 deleterious(0.04) possibly_damaging(0.893) TCGA-E2-A109-01 8 38876379 38876379 G A ADAM9 Missense_Mutation p.R205K 0.03 tolerated(0.08) probably_damaging(0.997) TCGA-E2-A109-01 9 117106081 117106081 G A AKNA Missense_Mutation p.H1222Y 0.17 deleterious(0.01) benign(0.055) TCGA-E2-A109-01 9 139618193 139618193 C A FAM69B Silent p.L421L 0.11 TCGA-E2-A109-01 9 35853682 35853682 G T TMEM8B Missense_Mutation p.G422C 0.59 deleterious(0.01) probably_damaging(0.98) TCGA-E2-A109-01 9 93375798 93375798 G A DIRAS2 Silent p.I104I 0.23 TCGA-E2-A109-01 X 103080361 103080361 G T RAB9B Silent p.P118P 0.44 TCGA-E2-A109-01 X 105868340 105868340 C G CXorf57 Missense_Mutation p.D269E 0.42 deleterious(0) probably_damaging(0.921) TCGA-E2-A109-01 X 107418928 107418928 C A COL4A6 Missense_Mutation p.G930V 0.39 probably_damaging(1) TCGA-E2-A109-01 X 118239020 118239020 C A KIAA1210 Missense_Mutation p.D335Y 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-E2-A109-01 X 128709149 128709149 A T OCRL Missense_Mutation p.K545N 0.39 deleterious(0) possibly_damaging(0.724) TCGA-E2-A109-01 X 129171506 129171506 G A BCORL1 Silent p.T1490T 0.35 TCGA-E2-A109-01 X 13764997 13764997 A T OFD1 Missense_Mutation p.K251N 0.44 deleterious(0) possibly_damaging(0.549) TCGA-E2-A109-01 X 30269554 30269554 C A MAGEB1 Missense_Mutation p.A315D 0.43 deleterious(0) unknown(0) TCGA-E2-A109-01 X 30269555 30269555 C A MAGEB1 Silent p.A315A 0.43 TCGA-E2-A109-01 X 32305754 32305754 G T DMD Missense_Mutation p.A2061E 0.13 benign(0.197) TCGA-E2-A109-01 X 40573796 40573796 C T MED14 Missense_Mutation p.C172Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-E2-A109-01 X 49108054 49108055 - AGGCCTG FOXP3 Intron 0.33 TCGA-E2-A109-01 X 50659007 50659007 G T BMP15 Missense_Mutation p.R193S 0.11 tolerated(0.22) benign(0.022) TCGA-E2-A109-01 X 53106957 53106957 G T GPR173 3'UTR 0.39 TCGA-E2-A109-01 X 73961157 73961157 G T KIAA2022 Missense_Mutation p.L1079I 0.33 tolerated(0.05) benign(0.164) TCGA-E2-A109-01 X 79965065 79965065 C T BRWD3 Silent p.E779E 0.05 TCGA-E2-A10A-01 10 127787014 127787019 TGCACA - ADAM12 In_Frame_Del p.M324_C325del 0.21 TCGA-E2-A10A-01 10 8115922 8115923 - C GATA3 Frame_Shift_Ins p.P426Afs*82 0.39 TCGA-E2-A10A-01 11 47611477 47611477 C T C1QTNF4 Missense_Mutation p.A296T 0.10 tolerated(0.18) possibly_damaging(0.901) TCGA-E2-A10A-01 11 73021058 73021058 C T ARHGEF17 Missense_Mutation p.R459W 0.05 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-E2-A10A-01 11 76872024 76872024 C T MYO7A Silent p.I402I 0.30 TCGA-E2-A10A-01 12 109288095 109288095 G A DAO Silent p.A188A 0.35 TCGA-E2-A10A-01 12 51128870 51128870 A G DIP2B Missense_Mutation p.E1353G 0.35 tolerated(0.07) possibly_damaging(0.885) TCGA-E2-A10A-01 13 73349502 73349502 C T DIS3 Silent p.Q278Q 0.44 TCGA-E2-A10A-01 14 36155819 36155819 C T RALGAPA1 Missense_Mutation p.G830S 0.38 tolerated(1) benign(0.002) TCGA-E2-A10A-01 15 48431272 48431272 A - SLC24A5 Frame_Shift_Del p.K328Sfs*8 0.23 TCGA-E2-A10A-01 15 76072993 76072993 G A RN7SL319P 5'Flank 0.04 TCGA-E2-A10A-01 16 50102743 50102743 G A HEATR3 Missense_Mutation p.D122N 0.38 deleterious(0.01) possibly_damaging(0.729) TCGA-E2-A10A-01 16 50709816 50709816 C T SNX20 Silent p.L49L 0.49 TCGA-E2-A10A-01 16 58075625 58075625 C A MMP15 Missense_Mutation p.P339T 0.35 tolerated(0.28) benign(0.032) TCGA-E2-A10A-01 16 84050323 84050323 C T SLC38A8 Missense_Mutation p.M321I 0.60 tolerated(1) benign(0.004) TCGA-E2-A10A-01 16 90072656 90072656 G A DBNDD1 3'UTR 0.55 TCGA-E2-A10A-01 16 90072686 90072686 G C DBNDD1 3'UTR 0.56 TCGA-E2-A10A-01 16 90072737 90072737 G A DBNDD1 3'UTR 0.62 TCGA-E2-A10A-01 17 48274595 48274595 C T COL1A1 Splice_Site p.X233_splice 0.36 TCGA-E2-A10A-01 17 57326133 57326133 C T GDPD1 Silent p.V118V 0.14 TCGA-E2-A10A-01 19 39216514 39216514 G T ACTN4 Missense_Mutation p.D721Y 0.19 deleterious(0.02) probably_damaging(1) TCGA-E2-A10A-01 19 41125311 41125311 G T LTBP4 Nonsense_Mutation p.E1110* 0.34 TCGA-E2-A10A-01 19 54784374 54784374 C T LILRB2 5'UTR 0.35 TCGA-E2-A10A-01 1 154924348 154924348 G C PBXIP1 Missense_Mutation p.S34C 0.04 deleterious(0.02) possibly_damaging(0.823) TCGA-E2-A10A-01 1 158577134 158577134 G C OR10Z1 Missense_Mutation p.R302S 0.27 deleterious(0.02) benign(0.073) TCGA-E2-A10A-01 1 40705054 40705054 G A RLF Silent p.V1560V 0.04 TCGA-E2-A10A-01 20 44665941 44665941 G T SLC12A5 Missense_Mutation p.G200W 0.39 deleterious(0) probably_damaging(1) TCGA-E2-A10A-01 5 56152454 56152455 - A MAP3K1 Frame_Shift_Ins p.G172Rfs*7 0.29 TCGA-E2-A10A-01 6 152129128 152129131 CCGT - ESR1 Frame_Shift_Del p.P29Sfs*79 0.33 TCGA-E2-A10A-01 6 2785389 2785389 G A WRNIP1 Missense_Mutation p.R624K 0.29 tolerated(0.83) benign(0.055) TCGA-E2-A10A-01 7 141752647 141752647 G T MGAM Missense_Mutation p.V1008F 0.38 tolerated(0.08) benign(0.037) TCGA-E2-A10A-01 9 135933380 135933380 C T GTF3C5 3'UTR 0.08 TCGA-E2-A10A-01 X 47101513 47101513 A G USP11 Silent p.K447K 0.42 TCGA-E2-A10B-01 10 118441326 118441326 C T HSPA12A Missense_Mutation p.E300K 0.04 tolerated(0.07) benign(0.037) TCGA-E2-A10B-01 10 32324464 32324464 G C KIF5B Silent p.L316L 0.31 TCGA-E2-A10B-01 10 32324498 32324498 G A KIF5B Missense_Mutation p.S305L 0.33 deleterious(0) benign(0.378) TCGA-E2-A10B-01 11 1101591 1101591 C T MUC2 Missense_Mutation p.S2535F 0.56 unknown(0) TCGA-E2-A10B-01 11 4661335 4661335 C T OR51D1 Silent p.I105I 0.03 TCGA-E2-A10B-01 11 55594934 55594934 G A OR5L2 Silent p.K80K 0.04 TCGA-E2-A10B-01 11 62520584 62520584 C T ZBTB3 Missense_Mutation p.D235N 0.30 tolerated(0.33) benign(0.001) TCGA-E2-A10B-01 12 106751627 106751630 TCTA - POLR3B 5'UTR 0.10 TCGA-E2-A10B-01 12 125396964 125396964 G A UBC Missense_Mutation p.R452C 0.23 tolerated(0.06) possibly_damaging(0.645) TCGA-E2-A10B-01 12 129190522 129190522 G C TMEM132C Silent p.G1003G 0.12 TCGA-E2-A10B-01 12 130834441 130834441 G A PIWIL1 Missense_Mutation p.D325N 0.27 tolerated(0.46) benign(0.026) TCGA-E2-A10B-01 12 15702093 15702093 T C PTPRO Silent p.N790N 0.07 TCGA-E2-A10B-01 12 7015591 7015591 C T LRRC23 Silent p.Y85Y 0.09 TCGA-E2-A10B-01 13 113474225 113474225 G A ATP11A Missense_Mutation p.R229H 0.56 deleterious(0) probably_damaging(0.934) TCGA-E2-A10B-01 13 52707946 52707946 C T NEK3 Missense_Mutation p.E422K 0.13 deleterious(0.03) benign(0.15) TCGA-E2-A10B-01 14 20863645 20863645 T G TEP1 Missense_Mutation p.Q631P 0.38 tolerated(0.15) possibly_damaging(0.46) TCGA-E2-A10B-01 15 44084528 44084528 A G SERF2 5'UTR 0.54 TCGA-E2-A10B-01 15 50782646 50782646 C G USP8 Missense_Mutation p.P720A 0.49 deleterious(0) probably_damaging(0.98) TCGA-E2-A10B-01 15 73044897 73044897 G C ADPGK Missense_Mutation p.L426V 0.07 deleterious(0.04) benign(0.263) TCGA-E2-A10B-01 15 83482001 83482001 T C WHAMM Silent p.V252V 0.04 TCGA-E2-A10B-01 16 50745896 50745896 G A NOD2 Missense_Mutation p.E692K 0.12 tolerated(0.24) benign(0.006) TCGA-E2-A10B-01 16 77317840 77317840 G T ADAMTS18 3'UTR 0.37 TCGA-E2-A10B-01 17 29123274 29123274 G A CRLF3 Silent p.D169D 0.56 TCGA-E2-A10B-01 17 40359681 40359681 C T STAT5B Missense_Mutation p.D658N 0.04 deleterious(0) probably_damaging(0.974) TCGA-E2-A10B-01 17 40826020 40826020 C T PLEKHH3 Nonsense_Mutation p.W77* 0.13 TCGA-E2-A10B-01 17 79662007 79662007 C T HGS Silent p.R343R 0.63 TCGA-E2-A10B-01 18 12706699 12706699 G A PSMG2 Missense_Mutation p.E70K 0.16 tolerated(0.21) benign(0.026) TCGA-E2-A10B-01 18 28588347 28588347 C G DSC3 Missense_Mutation p.E470Q 0.05 deleterious(0.02) possibly_damaging(0.848) TCGA-E2-A10B-01 18 909674 909674 C T ADCYAP1 3'UTR 0.10 TCGA-E2-A10B-01 19 10670170 10670170 C T KRI1 Silent p.L359L 0.12 TCGA-E2-A10B-01 19 12432110 12432110 T C ZNF563 Missense_Mutation p.Y56C 0.36 tolerated(0.11) benign(0.012) TCGA-E2-A10B-01 19 12876942 12876942 G A HOOK2 Missense_Mutation p.R496C 0.20 deleterious(0.02) possibly_damaging(0.791) TCGA-E2-A10B-01 19 21131813 21131813 G C ZNF85 Missense_Mutation p.E165Q 0.47 deleterious(0.05) benign(0.016) TCGA-E2-A10B-01 19 38055672 38055672 G T ZNF571 Missense_Mutation p.T553N 0.39 deleterious(0.01) benign(0.001) TCGA-E2-A10B-01 19 45575819 45575819 G A ZNF296 Silent p.A156A 0.06 TCGA-E2-A10B-01 19 45862040 45862040 T C ERCC2 Intron 0.46 TCGA-E2-A10B-01 19 53884186 53884186 A G ZNF525 Silent p.K118K 0.16 TCGA-E2-A10B-01 19 57642078 57642078 G C USP29 Missense_Mutation p.E679Q 0.06 tolerated(0.19) benign(0.064) TCGA-E2-A10B-01 1 19595111 19595111 C T AKR7L Missense_Mutation p.M85I 0.55 benign(0.012) TCGA-E2-A10B-01 1 197112310 197112310 C T ASPM Missense_Mutation p.A358T 0.07 tolerated(0.14) benign(0.005) TCGA-E2-A10B-01 21 15011930 15011930 G C POTED Missense_Mutation p.E502Q 0.38 deleterious(0.02) possibly_damaging(0.744) TCGA-E2-A10B-01 22 42557280 42557280 G A TCF20 3'UTR 0.27 TCGA-E2-A10B-01 22 45204250 45204250 C T ARHGAP8 Silent p.Y199Y 0.10 TCGA-E2-A10B-01 2 107007843 107007843 C T PLGLA RNA 0.05 TCGA-E2-A10B-01 3 112357401 112357401 G C CCDC80 Nonsense_Mutation p.S451* 0.05 TCGA-E2-A10B-01 3 133661577 133661577 G A SLCO2A1 Silent p.S499S 0.29 TCGA-E2-A10B-01 3 151535239 151535239 C A AADAC Nonsense_Mutation p.S75* 0.32 TCGA-E2-A10B-01 3 170078160 170078160 C T SKIL Missense_Mutation p.S14L 0.07 deleterious_low_confidence(0.01) benign(0.002) TCGA-E2-A10B-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.34 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A10B-01 3 193272697 193272697 G C ATP13A4 5'UTR 0.19 TCGA-E2-A10B-01 4 106190828 106190828 C T TET2 Missense_Mutation p.S1369L 0.55 deleterious(0) probably_damaging(0.997) TCGA-E2-A10B-01 4 30921826 30921826 C T PCDH7 Nonsense_Mutation p.Q1076* 0.16 TCGA-E2-A10B-01 4 37446878 37446878 T C KIAA1239 Missense_Mutation p.W1090R 0.09 tolerated(0.82) benign(0.131) TCGA-E2-A10B-01 4 85657344 85657347 ATTA - WDFY3 Frame_Shift_Del p.K2299Tfs*22 0.39 TCGA-E2-A10B-01 5 130834231 130834231 C G RAPGEF6 Missense_Mutation p.D442H 0.70 deleterious(0) probably_damaging(1) TCGA-E2-A10B-01 5 140699775 140699775 A T TAF7 5'UTR 0.17 TCGA-E2-A10B-01 5 150946518 150946518 C A FAT2 Missense_Mutation p.V659L 0.29 benign(0.2) TCGA-E2-A10B-01 5 176678730 176678730 G C NSD1 Splice_Site p.X1548_splice 0.05 TCGA-E2-A10B-01 5 37153889 37153889 C T C5orf42 Missense_Mutation p.E2722K 0.03 deleterious(0) probably_damaging(1) TCGA-E2-A10B-01 5 94988783 94988783 T G RFESD Intron 0.72 TCGA-E2-A10B-01 6 129609065 129609065 C A LAMA2 Missense_Mutation p.L871I 0.11 tolerated(0.08) probably_damaging(0.998) TCGA-E2-A10B-01 6 26217379 26217379 G T HIST1H2AE Silent p.L59L 0.14 TCGA-E2-A10B-01 7 107710329 107710329 A C LAMB4 Missense_Mutation p.L709R 0.31 deleterious(0) probably_damaging(0.99) TCGA-E2-A10B-01 7 123269363 123269363 G A ASB15 Missense_Mutation p.G439S 0.11 deleterious(0.02) probably_damaging(0.962) TCGA-E2-A10B-01 7 14797340 14797340 T C DGKB Silent p.L29L 0.25 TCGA-E2-A10B-01 7 39500226 39500226 C T POU6F2 Missense_Mutation p.R495C 0.31 deleterious(0) unknown(0) TCGA-E2-A10B-01 8 99118536 99118536 C T HRSP12 Missense_Mutation p.E64K 0.57 tolerated(0.14) benign(0.094) TCGA-E2-A10B-01 9 33443389 33443389 C G AQP3 Silent p.L101L 0.28 TCGA-E2-A10B-01 9 79931137 79931137 A G VPS13A Missense_Mutation p.N1560D 0.21 tolerated(0.77) probably_damaging(0.999) TCGA-E2-A10B-01 X 105905447 105905447 G A CXorf57 Silent p.A727A 0.32 TCGA-E2-A10B-01 X 150349138 150349138 C A GPR50 Silent p.T361T 0.06 TCGA-E2-A10B-01 X 15677209 15677209 T C TMEM27 Missense_Mutation p.N45D 0.04 tolerated(0.12) benign(0.008) TCGA-E2-A10B-01 X 41402022 41402022 C G CASK Missense_Mutation p.E693Q 0.04 tolerated(0.2) benign(0.086) TCGA-E2-A10B-01 X 47306890 47306890 G A ZNF41 Missense_Mutation p.S760L 0.07 deleterious(0) possibly_damaging(0.631) TCGA-E2-A10B-01 X 71425081 71425081 G T ERCC6L Missense_Mutation p.P1179H 0.32 tolerated(0.1) possibly_damaging(0.717) TCGA-E2-A10C-01 10 103906618 103906618 A G PPRC1 Missense_Mutation p.H1290R 0.57 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-E2-A10C-01 10 11299828 11299828 G A CELF2 Silent p.L177L 0.21 TCGA-E2-A10C-01 10 135194991 135194991 G A PAOX Missense_Mutation p.M232I 0.39 tolerated(0.43) benign(0.002) TCGA-E2-A10C-01 10 14996007 14996007 C T DCLRE1C Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.983) TCGA-E2-A10C-01 10 17087062 17087062 C G CUBN Missense_Mutation p.E1206Q 0.17 tolerated(0.5) benign(0.013) TCGA-E2-A10C-01 10 17645931 17645931 C G PTPLA Missense_Mutation p.E125Q 0.16 deleterious(0.02) benign(0.377) TCGA-E2-A10C-01 10 27486360 27486360 C G ACBD5 Nonstop_Mutation p.*526Sext*18 0.17 TCGA-E2-A10C-01 10 28908478 28908478 G C WAC Missense_Mutation p.L629F 0.24 deleterious(0) probably_damaging(0.996) TCGA-E2-A10C-01 10 49414927 49414927 G A FRMPD2 Missense_Mutation p.S554L 0.11 tolerated(0.11) benign(0.205) TCGA-E2-A10C-01 10 49988056 49988056 C T WDFY4 Silent p.L1156L 0.10 TCGA-E2-A10C-01 10 50678496 50678496 C T ERCC6 Silent p.E1170E 0.12 TCGA-E2-A10C-01 10 50736490 50736490 C G ERCC6-PGBD3 Missense_Mutation p.D209H 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-E2-A10C-01 10 62670718 62670718 C T RHOBTB1 Missense_Mutation p.E75K 0.04 tolerated(0.13) probably_damaging(0.998) TCGA-E2-A10C-01 10 64952854 64952854 G A JMJD1C Nonsense_Mutation p.Q1974* 0.09 TCGA-E2-A10C-01 10 68687691 68687691 C A LRRTM3 Silent p.I339I 0.36 TCGA-E2-A10C-01 10 70646331 70646331 G C STOX1 Missense_Mutation p.E927Q 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-E2-A10C-01 10 75832608 75832608 C A VCL Nonsense_Mutation p.S207* 0.28 TCGA-E2-A10C-01 10 79745020 79745020 C T POLR3A Silent p.L1050L 0.14 TCGA-E2-A10C-01 10 88930320 88930320 G A FAM35A Silent p.P573P 0.32 TCGA-E2-A10C-01 10 89720817 89720853 ATGATCTTGACAAAGCAAATAAAGACAAAGCCAACCG - PTEN Frame_Shift_Del p.D324Tfs*8 0.40 TCGA-E2-A10C-01 10 91198588 91198588 G C SLC16A12 Silent p.L267L 0.26 TCGA-E2-A10C-01 11 108057261 108057261 G C NPAT Missense_Mutation p.P225R 0.35 deleterious(0.01) probably_damaging(0.923) TCGA-E2-A10C-01 11 108170512 108170512 G A ATM Missense_Mutation p.D1693N 0.42 tolerated(0.41) benign(0.008) TCGA-E2-A10C-01 11 114262276 114262276 C T C11orf71 3'UTR 0.11 TCGA-E2-A10C-01 11 117710999 117710999 C G FXYD6 Intron 0.46 TCGA-E2-A10C-01 11 118926849 118926849 C T HYOU1 Silent p.Q8Q 0.16 TCGA-E2-A10C-01 11 124495579 124495579 G A TBRG1 Silent p.K78K 0.26 TCGA-E2-A10C-01 11 128651915 128651915 G C FLI1 Missense_Mutation p.E218Q 0.18 tolerated(0.53) benign(0.01) TCGA-E2-A10C-01 11 134047318 134047318 C T NCAPD3 Silent p.K939K 0.20 TCGA-E2-A10C-01 11 2424787 2424787 G C TSSC4 Missense_Mutation p.R308S 0.24 deleterious(0) benign(0.306) TCGA-E2-A10C-01 11 36597333 36597333 G C RAG1 Missense_Mutation p.E827Q 0.26 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-E2-A10C-01 11 47772520 47772520 G A FNBP4 Missense_Mutation p.S285F 0.27 deleterious(0.02) benign(0.352) TCGA-E2-A10C-01 11 4929293 4929293 G C OR51A7 Missense_Mutation p.E232Q 0.32 deleterious(0.04) benign(0.367) TCGA-E2-A10C-01 11 55657466 55657466 C T TRIM51 Silent p.L270L 0.44 TCGA-E2-A10C-01 11 59210752 59210752 C G OR5A1 Missense_Mutation p.I37M 0.19 deleterious(0.04) possibly_damaging(0.569) TCGA-E2-A10C-01 11 59940572 59940572 G A MS4A6A Silent p.L222L 0.13 TCGA-E2-A10C-01 11 61017138 61017138 C T PGA5 Intron 0.31 TCGA-E2-A10C-01 11 62435234 62435234 G A METTL12 3'UTR 0.18 TCGA-E2-A10C-01 11 63965415 63965415 G A STIP1 Missense_Mutation p.R331Q 0.15 deleterious(0) possibly_damaging(0.861) TCGA-E2-A10C-01 11 64764401 64764401 A C BATF2 5'UTR 0.40 TCGA-E2-A10C-01 11 6501680 6501680 T C ARFIP2 Intron 0.16 TCGA-E2-A10C-01 11 6816236 6816236 G T OR6A2 Nonsense_Mutation p.S235* 0.26 TCGA-E2-A10C-01 11 6816999 6816999 C T OR6A2 5'UTR 0.29 TCGA-E2-A10C-01 11 7067969 7067969 G C NLRP14 Missense_Mutation p.E677Q 0.23 tolerated(0.17) benign(0.03) TCGA-E2-A10C-01 11 74047596 74047596 G C PGM2L1 3'UTR 0.35 TCGA-E2-A10C-01 11 74500681 74500681 C G RNF169 Missense_Mutation p.F171L 0.10 tolerated(0.07) probably_damaging(0.97) TCGA-E2-A10C-01 11 76175025 76175025 C A C11orf30 Silent p.I244I 0.26 TCGA-E2-A10C-01 11 76175093 76175093 C G C11orf30 Nonsense_Mutation p.S267* 0.27 TCGA-E2-A10C-01 11 812762 812762 G C RPLP2 Missense_Mutation p.E92Q 0.28 deleterious(0.01) unknown(0) TCGA-E2-A10C-01 11 94038866 94038866 G A FOLR4 Missense_Mutation p.E22K 0.18 tolerated(0.42) benign(0.006) TCGA-E2-A10C-01 12 124101077 124101077 G A DDX55 Missense_Mutation p.D326N 0.22 deleterious(0) probably_damaging(0.983) TCGA-E2-A10C-01 12 124158159 124158159 C T TCTN2 Intron 0.25 TCGA-E2-A10C-01 12 132862886 132862886 G A GALNT9 Silent p.L123L 0.17 TCGA-E2-A10C-01 12 132862887 132862887 A G GALNT9 Missense_Mutation p.L123P 0.18 deleterious(0) probably_damaging(0.994) TCGA-E2-A10C-01 12 15718524 15718524 C T PTPRO Intron 0.10 TCGA-E2-A10C-01 12 19467754 19467754 G C PLEKHA5 Missense_Mutation p.E682Q 0.13 deleterious(0.04) probably_damaging(0.982) TCGA-E2-A10C-01 12 21960414 21960414 C G ABCC9 Splice_Site p.X1439_splice 0.09 TCGA-E2-A10C-01 12 26748416 26748416 G A ITPR2 Silent p.F1454F 0.17 TCGA-E2-A10C-01 12 30834604 30834604 C A IPO8 Silent p.V157V 0.14 TCGA-E2-A10C-01 12 30888003 30888003 G A CAPRIN2 Silent p.F236F 0.12 TCGA-E2-A10C-01 12 32138135 32138135 G A KIAA1551 Missense_Mutation p.E1416K 0.18 deleterious(0) probably_damaging(0.966) TCGA-E2-A10C-01 12 40265720 40265720 C T SLC2A13 Missense_Mutation p.D360N 0.18 tolerated(0.18) benign(0.055) TCGA-E2-A10C-01 12 50724375 50724375 G C FAM186A Missense_Mutation p.L2339V 0.16 deleterious(0) probably_damaging(0.996) TCGA-E2-A10C-01 12 51076995 51076995 G A DIP2B Silent p.V427V 0.16 TCGA-E2-A10C-01 12 52078046 52078046 G C SCN8A Missense_Mutation p.R122T 0.24 deleterious(0) probably_damaging(0.972) TCGA-E2-A10C-01 12 55846936 55846936 G C OR6C2 Nonstop_Mutation p.*313Yext*? 0.13 TCGA-E2-A10C-01 12 56347990 56347990 G A PMEL 3'UTR 0.23 TCGA-E2-A10C-01 12 56397621 56397621 G A SUOX Missense_Mutation p.E150K 0.15 tolerated(0.19) benign(0.261) TCGA-E2-A10C-01 12 58087920 58087920 C G OS9 5'UTR 0.20 TCGA-E2-A10C-01 12 64410768 64410768 G A SRGAP1 Missense_Mutation p.M155I 0.05 tolerated(0.09) benign(0.009) TCGA-E2-A10C-01 12 66539731 66539731 G A TMBIM4 Silent p.F118F 0.38 TCGA-E2-A10C-01 12 66839218 66839218 C T GRIP1 Silent p.L423L 0.05 TCGA-E2-A10C-01 12 69746043 69746043 G C LYZ Missense_Mutation p.K115N 0.02 deleterious(0) probably_damaging(0.909) TCGA-E2-A10C-01 12 70209149 70209149 C T RAB3IP Nonsense_Mutation p.Q452* 0.08 TCGA-E2-A10C-01 12 70965064 70965064 C G PTPRB Missense_Mutation p.E1038Q 0.08 tolerated(0.19) possibly_damaging(0.462) TCGA-E2-A10C-01 12 71518973 71518973 G T TSPAN8 3'UTR 0.08 TCGA-E2-A10C-01 12 73056837 73056837 G A TRHDE Silent p.K979K 0.08 TCGA-E2-A10C-01 12 75698568 75698568 G A CAPS2 Nonsense_Mutation p.R269* 0.04 TCGA-E2-A10C-01 12 8200740 8200740 C T FOXJ2 Silent p.P360P 0.18 TCGA-E2-A10C-01 12 9085299 9085299 C A PHC1 Missense_Mutation p.H416N 0.06 deleterious_low_confidence(0) unknown(0) TCGA-E2-A10C-01 12 95498801 95498801 G A FGD6 Missense_Mutation p.S1160F 0.16 deleterious(0.01) probably_damaging(0.913) TCGA-E2-A10C-01 13 100915005 100915005 C G PCCA Missense_Mutation p.Q247E 0.21 tolerated(0.31) benign(0.009) TCGA-E2-A10C-01 13 114303695 114303695 C T ATP4B Silent p.E290E 0.22 TCGA-E2-A10C-01 13 19751442 19751442 G T TUBA3C Silent p.L227L 0.29 TCGA-E2-A10C-01 13 19751650 19751650 G T TUBA3C Nonsense_Mutation p.S158* 0.25 TCGA-E2-A10C-01 13 22245942 22245942 C T FGF9 5'UTR 0.30 TCGA-E2-A10C-01 13 25480951 25480951 C T CENPJ Missense_Mutation p.D409N 0.32 deleterious(0.02) possibly_damaging(0.776) TCGA-E2-A10C-01 13 39587532 39587532 G A PROSER1 Silent p.F619F 0.26 TCGA-E2-A10C-01 13 50587226 50587226 G A TRIM13 Missense_Mutation p.E387K 0.22 tolerated_low_confidence(0.22) benign(0.04) TCGA-E2-A10C-01 14 101349406 101349406 C T RTL1 Missense_Mutation p.E574K 0.27 tolerated(0.15) probably_damaging(0.992) TCGA-E2-A10C-01 14 105410836 105410836 G A AHNAK2 Missense_Mutation p.S3651L 0.16 probably_damaging(0.947) TCGA-E2-A10C-01 14 105418953 105418953 C G AHNAK2 Silent p.L945L 0.21 TCGA-E2-A10C-01 14 106586182 106586182 C T IGHV3-13 Missense_Mutation p.M101I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.455) TCGA-E2-A10C-01 14 20444652 20444652 G C OR4K15 Silent p.L325L 0.17 TCGA-E2-A10C-01 14 20483291 20483291 C T OR4K14 Missense_Mutation p.R21Q 0.22 tolerated(0.76) benign(0.002) TCGA-E2-A10C-01 14 22293984 22293984 C T TRAV10 Nonsense_Mutation p.Q30* 0.12 TCGA-E2-A10C-01 14 22788866 22788866 G C TRAV41 Missense_Mutation p.E27Q 0.17 tolerated(0.06) benign(0.003) TCGA-E2-A10C-01 14 23072319 23072319 G A ABHD4 Missense_Mutation p.R46K 0.15 tolerated(0.4) benign(0.002) TCGA-E2-A10C-01 14 24912021 24912021 C T SDR39U1 5'Flank 0.14 TCGA-E2-A10C-01 14 36277933 36277933 C T RALGAPA1 Intron 0.15 TCGA-E2-A10C-01 14 39639335 39639335 C G TRAPPC6B 5'UTR 0.15 TCGA-E2-A10C-01 14 53173920 53173920 G A PSMC6 Missense_Mutation p.E9K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-E2-A10C-01 14 56757079 56757079 G A PELI2 Missense_Mutation p.E201K 0.13 tolerated(0.44) benign(0.228) TCGA-E2-A10C-01 14 60063404 60063404 G A RTN1 3'UTR 0.13 TCGA-E2-A10C-01 14 62193473 62193473 C G HIF1A Silent p.L193L 0.19 TCGA-E2-A10C-01 14 64669652 64669652 G A SYNE2 Missense_Mutation p.E6058K 0.17 probably_damaging(0.999) TCGA-E2-A10C-01 14 68264728 68264728 C T ZFYVE26 Intron 0.19 TCGA-E2-A10C-01 14 74665780 74665780 G C LIN52 3'UTR 0.13 TCGA-E2-A10C-01 14 76621084 76621084 C G GPATCH2L Silent p.L126L 0.15 TCGA-E2-A10C-01 14 77942061 77942061 G A ISM2 Silent p.I531I 0.14 TCGA-E2-A10C-01 14 94097186 94097186 G C UNC79 Missense_Mutation p.R1706P 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A10C-01 15 25924558 25924558 G A ATP10A Missense_Mutation p.S1477L 0.20 tolerated_low_confidence(0.18) benign(0.01) TCGA-E2-A10C-01 15 33765740 33765740 G T RYR3 Splice_Site p.X57_splice 0.47 TCGA-E2-A10C-01 15 41099931 41099931 G C ZFYVE19 Silent p.R48R 0.20 TCGA-E2-A10C-01 15 43700247 43700247 G C TP53BP1 Silent p.L1880L 0.19 TCGA-E2-A10C-01 15 44900705 44900705 G A SPG11 Silent p.L1130L 0.20 TCGA-E2-A10C-01 15 45003787 45003787 C T B2M Missense_Mutation p.L15F 0.29 deleterious(0.01) possibly_damaging(0.637) TCGA-E2-A10C-01 15 45564978 45564978 C T SLC28A2 Nonsense_Mutation p.Q619* 0.14 TCGA-E2-A10C-01 15 83933455 83933455 A T BNC1 Missense_Mutation p.M183K 0.39 deleterious(0) probably_damaging(0.993) TCGA-E2-A10C-01 15 89762200 89762200 C T RLBP1 Missense_Mutation p.E3K 0.16 tolerated_low_confidence(0.27) benign(0.033) TCGA-E2-A10C-01 15 91312739 91312739 G A BLM Silent p.V826V 0.25 TCGA-E2-A10C-01 15 91354615 91354615 C T BLM Missense_Mutation p.S1352F 0.22 tolerated(0.7) benign(0.001) TCGA-E2-A10C-01 15 99715275 99715275 G A TTC23 Missense_Mutation p.S282L 0.25 deleterious(0) probably_damaging(0.965) TCGA-E2-A10C-01 16 11035707 11035707 G A DEXI Silent p.L52L 0.15 TCGA-E2-A10C-01 16 11133666 11133666 G A CLEC16A Silent p.E531E 0.10 TCGA-E2-A10C-01 16 14738180 14738180 C T BFAR 5'UTR 0.49 TCGA-E2-A10C-01 16 19468194 19468194 C G TMC5 Intron 0.35 TCGA-E2-A10C-01 16 19468321 19468321 C T TMC5 Intron 0.30 TCGA-E2-A10C-01 16 21213434 21213434 C T ZP2 Silent p.T426T 0.43 TCGA-E2-A10C-01 16 21893239 21893239 G C RP11-645C24.2 RNA 0.28 TCGA-E2-A10C-01 16 2336827 2336827 G A ABCA3 Missense_Mutation p.S1049F 0.34 deleterious(0) possibly_damaging(0.868) TCGA-E2-A10C-01 16 28507853 28507853 G T APOBR Missense_Mutation p.E497D 0.11 deleterious(0.02) benign(0.388) TCGA-E2-A10C-01 16 28508304 28508304 G A APOBR Missense_Mutation p.E648K 0.12 tolerated(0.6) unknown(0) TCGA-E2-A10C-01 16 28508563 28508563 G A APOBR Missense_Mutation p.R734K 0.12 tolerated(1) benign(0) TCGA-E2-A10C-01 16 28509311 28509311 G C APOBR Missense_Mutation p.W983C 0.07 deleterious(0) probably_damaging(0.95) TCGA-E2-A10C-01 16 31503569 31503569 C T C16orf58 Missense_Mutation p.D394N 0.20 tolerated(0.14) benign(0.001) TCGA-E2-A10C-01 16 31926785 31926785 G C ZNF267 Missense_Mutation p.E405D 0.36 deleterious(0) benign(0.413) TCGA-E2-A10C-01 16 31926979 31926979 G A ZNF267 Missense_Mutation p.S470N 0.35 deleterious(0.02) benign(0.258) TCGA-E2-A10C-01 16 3633370 3633370 C G SLX4 Missense_Mutation p.Q1627H 0.18 tolerated(0.15) benign(0.052) TCGA-E2-A10C-01 16 56543943 56543943 G C BBS2 Missense_Mutation p.L180V 0.21 tolerated(0.33) benign(0.247) TCGA-E2-A10C-01 16 56782199 56782199 G A NUP93 Missense_Mutation p.E14K 0.33 deleterious(0.05) benign(0.129) TCGA-E2-A10C-01 16 57070087 57070087 G T NLRC5 Missense_Mutation p.R901S 0.41 deleterious(0.01) benign(0.097) TCGA-E2-A10C-01 16 57994422 57994422 C T CNGB1 Missense_Mutation p.E183K 0.32 tolerated_low_confidence(0.07) benign(0.022) TCGA-E2-A10C-01 16 69718792 69718792 G T NFAT5 Missense_Mutation p.A565S 0.20 benign(0.003) TCGA-E2-A10C-01 16 72094180 72094180 C T HP Silent p.L204L 0.22 TCGA-E2-A10C-01 16 72133171 72133171 G A DHX38 Missense_Mutation p.D318N 0.46 tolerated(0.1) benign(0.184) TCGA-E2-A10C-01 16 72166725 72166725 C T PMFBP1 Missense_Mutation p.E457K 0.27 deleterious(0.01) possibly_damaging(0.713) TCGA-E2-A10C-01 16 86612373 86612373 C G FOXL1 Missense_Mutation p.S15W 0.27 deleterious(0) probably_damaging(0.979) TCGA-E2-A10C-01 17 10312474 10312474 G A MYH8 Silent p.S635S 0.48 TCGA-E2-A10C-01 17 1795220 1795220 G A RPA1 Missense_Mutation p.E549K 0.24 tolerated(0.12) benign(0.059) TCGA-E2-A10C-01 17 2569362 2569362 C G PAFAH1B1 Missense_Mutation p.S57C 0.38 deleterious(0) probably_damaging(0.987) TCGA-E2-A10C-01 17 26101330 26101330 G A NOS2 Missense_Mutation p.H477Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-E2-A10C-01 17 27049656 27049656 C T RPL23A Intron 0.17 TCGA-E2-A10C-01 17 27613780 27613780 G A NUFIP2 Missense_Mutation p.S411F 0.17 deleterious(0) probably_damaging(0.997) TCGA-E2-A10C-01 17 27613855 27613855 G T NUFIP2 Missense_Mutation p.S386Y 0.21 deleterious(0) probably_damaging(0.994) TCGA-E2-A10C-01 17 27614141 27614141 G A NUFIP2 Nonsense_Mutation p.R291* 0.20 TCGA-E2-A10C-01 17 29162675 29162675 G C ATAD5 Missense_Mutation p.E526Q 0.22 deleterious(0.05) benign(0.156) TCGA-E2-A10C-01 17 32684555 32684555 G A CCL13 Silent p.Q46Q 0.33 TCGA-E2-A10C-01 17 35981176 35981176 C T DDX52 Silent p.R499R 0.19 TCGA-E2-A10C-01 17 43592111 43592111 C T LRRC37A4P RNA 0.06 TCGA-E2-A10C-01 17 47299506 47299506 G C ABI3 Missense_Mutation p.D286H 0.24 deleterious(0.05) possibly_damaging(0.861) TCGA-E2-A10C-01 17 48456488 48456488 G A EME1 Missense_Mutation p.R391K 0.13 tolerated(0.3) benign(0.011) TCGA-E2-A10C-01 17 55065576 55065576 G C SCPEP1 Splice_Site p.X158_splice 0.18 TCGA-E2-A10C-01 17 55123443 55123443 C T RNF126P1 RNA 0.23 TCGA-E2-A10C-01 17 57290598 57290598 G C SMG8 Missense_Mutation p.R805T 0.31 deleterious(0.01) benign(0.033) TCGA-E2-A10C-01 17 61490920 61490920 G A TANC2 Silent p.A1231A 0.19 TCGA-E2-A10C-01 17 62750718 62750718 G C hsa-mir-6080 RNA 0.27 TCGA-E2-A10C-01 17 7691442 7691442 C T DNAH2 Silent p.L2260L 0.32 TCGA-E2-A10C-01 17 77921632 77921632 T A TBC1D16 Splice_Site p.X514_splice 0.31 TCGA-E2-A10C-01 17 80441594 80441594 G A NARF Missense_Mutation p.E258K 0.28 deleterious(0.03) possibly_damaging(0.536) TCGA-E2-A10C-01 17 8661642 8661642 G A SPDYE4 Missense_Mutation p.T20M 0.16 deleterious(0.01) benign(0.003) TCGA-E2-A10C-01 17 9757871 9757871 C T GLP2R Silent p.F188F 0.21 TCGA-E2-A10C-01 18 23598197 23598197 C G SS18 3'UTR 0.31 TCGA-E2-A10C-01 18 3253328 3253328 C T MYL12A Missense_Mutation p.S28L 0.29 deleterious(0) benign(0.348) TCGA-E2-A10C-01 18 44409752 44409752 C T PIAS2 Missense_Mutation p.M427I 0.25 tolerated(0.17) benign(0.004) TCGA-E2-A10C-01 18 67833354 67833354 G T RTTN Missense_Mutation p.H625N 0.25 deleterious(0) probably_damaging(0.979) TCGA-E2-A10C-01 18 6876136 6876136 G C ARHGAP28 Missense_Mutation p.E248Q 0.24 tolerated(0.22) benign(0.014) TCGA-E2-A10C-01 19 11170495 11170495 G A SMARCA4 Missense_Mutation p.D1568N 0.16 benign(0.001) TCGA-E2-A10C-01 19 11925149 11925149 C T ZNF440 5'UTR 0.22 TCGA-E2-A10C-01 19 12936703 12936703 G A RTBDN Silent p.H201H 0.45 TCGA-E2-A10C-01 19 13414674 13414674 C T CACNA1A Missense_Mutation p.E671K 0.21 possibly_damaging(0.81) TCGA-E2-A10C-01 19 15757899 15757899 C T CYP4F3 Silent p.F127F 0.22 TCGA-E2-A10C-01 19 17888953 17888953 G C FCHO1 Missense_Mutation p.E423Q 0.16 tolerated(0.36) possibly_damaging(0.533) TCGA-E2-A10C-01 19 19136939 19136939 C G SUGP2 Missense_Mutation p.R73T 0.18 deleterious(0.02) benign(0.196) TCGA-E2-A10C-01 19 19257861 19257861 G A MEF2B Silent p.P175P 0.19 TCGA-E2-A10C-01 19 19313039 19313039 C T NR2C2AP Intron 0.27 TCGA-E2-A10C-01 19 19750962 19750962 C T GMIP Missense_Mutation p.E157K 0.14 deleterious(0.03) possibly_damaging(0.831) TCGA-E2-A10C-01 19 21365597 21365597 T A ZNF431 Missense_Mutation p.L164Q 0.19 deleterious(0.01) probably_damaging(0.914) TCGA-E2-A10C-01 19 33602683 33602683 G A GPATCH1 Missense_Mutation p.E547K 0.06 deleterious(0) probably_damaging(1) TCGA-E2-A10C-01 19 35232425 35232425 G C ZNF181 Missense_Mutation p.R380T 0.18 tolerated(0.19) benign(0.01) TCGA-E2-A10C-01 19 37677367 37677367 C T ZNF585B Missense_Mutation p.E358K 0.23 tolerated(0.07) benign(0.23) TCGA-E2-A10C-01 19 39229285 39229285 C T CAPN12 Missense_Mutation p.D245N 0.16 tolerated(0.23) benign(0.037) TCGA-E2-A10C-01 19 39371529 39371529 C T SIRT2 Silent p.L252L 0.17 TCGA-E2-A10C-01 19 41029470 41029470 G A SPTBN4 Missense_Mutation p.A1261T 0.27 tolerated(0.46) benign(0.09) TCGA-E2-A10C-01 19 41945440 41945440 C G ATP5SL 5'UTR 0.18 TCGA-E2-A10C-01 19 42373805 42373805 G A RPS19 Silent p.L131L 0.09 TCGA-E2-A10C-01 19 4292535 4292535 C G TMIGD2 3'UTR 0.19 TCGA-E2-A10C-01 19 43233520 43233520 T A PSG3 Missense_Mutation p.D333V 0.36 deleterious(0.04) possibly_damaging(0.71) TCGA-E2-A10C-01 19 46283417 46283417 G A DMPK 5'UTR 0.21 TCGA-E2-A10C-01 19 46393934 46393934 G C MYPOP Missense_Mutation p.R383G 0.48 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-E2-A10C-01 19 49143354 49143354 C T CA11 Missense_Mutation p.E157K 0.18 deleterious(0.04) benign(0.184) TCGA-E2-A10C-01 19 49655283 49655283 G C HRC Silent p.V668V 0.27 TCGA-E2-A10C-01 19 50360970 50360970 C G PTOV1 Silent p.V245V 0.17 TCGA-E2-A10C-01 19 52919501 52919501 G A ZNF528 Missense_Mutation p.E466K 0.16 tolerated(1) benign(0) TCGA-E2-A10C-01 19 53304398 53304398 G C ZNF28 Missense_Mutation p.Q234E 0.18 deleterious(0.04) benign(0.304) TCGA-E2-A10C-01 19 55493625 55493625 G C NLRP2 Missense_Mutation p.E187Q 0.12 tolerated(1) benign(0.007) TCGA-E2-A10C-01 19 57088676 57088676 C A ZNF470 Missense_Mutation p.F293L 0.13 deleterious(0) probably_damaging(0.992) TCGA-E2-A10C-01 19 57088944 57088944 C G ZNF470 Missense_Mutation p.L383V 0.17 deleterious(0) probably_damaging(0.992) TCGA-E2-A10C-01 19 58265613 58265613 G C ZNF776 Missense_Mutation p.G372A 0.19 deleterious(0.02) possibly_damaging(0.884) TCGA-E2-A10C-01 19 58980584 58980584 C T ZNF324 Missense_Mutation p.S11F 0.23 deleterious(0) probably_damaging(0.965) TCGA-E2-A10C-01 19 8145920 8145920 G C FBN3 Missense_Mutation p.P2474A 0.20 tolerated(0.06) benign(0.344) TCGA-E2-A10C-01 19 8533661 8533661 G A HNRNPM Missense_Mutation p.E280K 0.17 tolerated(0.15) benign(0.057) TCGA-E2-A10C-01 19 9058093 9058093 T C MUC16 Missense_Mutation p.N9785D 0.36 unknown(0) TCGA-E2-A10C-01 1 103379913 103379913 G A COL11A1 Missense_Mutation p.P1325S 0.24 unknown(0) TCGA-E2-A10C-01 1 109607256 109607256 G A TAF13 Silent p.F88F 0.31 TCGA-E2-A10C-01 1 11137494 11137494 C G EXOSC10 Missense_Mutation p.E603Q 0.19 tolerated(0.14) benign(0.115) TCGA-E2-A10C-01 1 111737258 111737258 G C DENND2D Missense_Mutation p.Q246E 0.23 tolerated(0.2) benign(0.021) TCGA-E2-A10C-01 1 149398946 149398946 C G HIST2H3PS2 3'Flank 0.16 TCGA-E2-A10C-01 1 149858071 149858071 G C HIST2H2BE Missense_Mutation p.I40M 0.23 tolerated_low_confidence(0.14) benign(0.079) TCGA-E2-A10C-01 1 150601982 150601982 G A ENSA 5'UTR 0.13 TCGA-E2-A10C-01 1 155282164 155282164 C A FDPS Missense_Mutation p.T153N 0.16 deleterious(0.01) possibly_damaging(0.715) TCGA-E2-A10C-01 1 155838071 155838071 C G SYT11 Missense_Mutation p.S117C 0.13 deleterious(0.04) benign(0.285) TCGA-E2-A10C-01 1 1573894 1573894 C G CDK11B Missense_Mutation p.G440A 0.18 unknown(0) TCGA-E2-A10C-01 1 158636273 158636273 C T SPTA1 Missense_Mutation p.E685K 0.07 deleterious(0.02) benign(0.181) TCGA-E2-A10C-01 1 158813742 158813742 C T MNDA Intron 0.17 TCGA-E2-A10C-01 1 159021644 159021644 A T IFI16 Missense_Mutation p.K558M 0.54 deleterious(0) probably_damaging(1) TCGA-E2-A10C-01 1 163044339 163044339 C T RGS4 Nonsense_Mutation p.Q300* 0.15 TCGA-E2-A10C-01 1 169831924 169831924 C A SCYL3 Nonsense_Mutation p.E324* 0.22 TCGA-E2-A10C-01 1 170695469 170695469 G C PRRX1 Missense_Mutation p.E176Q 0.20 deleterious(0) probably_damaging(0.954) TCGA-E2-A10C-01 1 171033555 171033555 G A MROH9 3'UTR 0.15 TCGA-E2-A10C-01 1 171753159 171753159 G T METTL13 Nonsense_Mutation p.E145* 0.21 TCGA-E2-A10C-01 1 181727119 181727119 C G CACNA1E Missense_Mutation p.L1456V 0.18 deleterious(0.02) benign(0.364) TCGA-E2-A10C-01 1 182616022 182616022 T A RGS8 Missense_Mutation p.T149S 0.16 deleterious(0) probably_damaging(0.95) TCGA-E2-A10C-01 1 183876230 183876230 C T RGL1 Silent p.L554L 0.13 TCGA-E2-A10C-01 1 186283810 186283810 C G TPR Missense_Mutation p.Q2329H 0.18 possibly_damaging(0.585) TCGA-E2-A10C-01 1 186316447 186316447 C T TPR Missense_Mutation p.E974K 0.16 benign(0) TCGA-E2-A10C-01 1 193060633 193060633 C G GLRX2 3'Flank 0.14 TCGA-E2-A10C-01 1 193060645 193060645 C A GLRX2 3'Flank 0.12 TCGA-E2-A10C-01 1 196295947 196295947 C A KCNT2 Nonsense_Mutation p.E726* 0.17 TCGA-E2-A10C-01 1 198492443 198492443 C G ATP6V1G3 3'UTR 0.17 TCGA-E2-A10C-01 1 200818343 200818343 G A CAMSAP2 Missense_Mutation p.D816N 0.13 tolerated(0.18) benign(0.274) TCGA-E2-A10C-01 1 201869306 201869306 C T LMOD1 Missense_Mutation p.E279K 0.18 benign(0.002) TCGA-E2-A10C-01 1 209953885 209953885 G A TRAF3IP3 Silent p.E461E 0.17 TCGA-E2-A10C-01 1 209974721 209974721 C G IRF6 Missense_Mutation p.W13S 0.21 deleterious(0) probably_damaging(1) TCGA-E2-A10C-01 1 21800026 21800026 C T NBPF3 Silent p.L296L 0.22 TCGA-E2-A10C-01 1 221875700 221875700 C T DUSP10 3'UTR 0.17 TCGA-E2-A10C-01 1 222721350 222721350 G A HHIPL2 Silent p.L13L 0.16 TCGA-E2-A10C-01 1 2340225 2340225 G A PEX10 Missense_Mutation p.S89L 0.27 tolerated(0.71) benign(0) TCGA-E2-A10C-01 1 23519996 23519996 G A HTR1D Silent p.F239F 0.27 TCGA-E2-A10C-01 1 235972846 235972846 G C LYST Missense_Mutation p.F424L 0.13 deleterious(0.04) benign(0.003) TCGA-E2-A10C-01 1 236646505 236646505 C G EDARADD 3'Flank 0.14 TCGA-E2-A10C-01 1 237670043 237670043 G C RYR2 Missense_Mutation p.E883Q 0.20 possibly_damaging(0.46) TCGA-E2-A10C-01 1 24664133 24664133 G C GRHL3 Missense_Mutation p.E232Q 0.30 tolerated(0.59) probably_damaging(0.999) TCGA-E2-A10C-01 1 28800206 28800206 G A PHACTR4 Missense_Mutation p.E332K 0.26 tolerated(0.08) benign(0.008) TCGA-E2-A10C-01 1 32098889 32098889 C T PEF1 Missense_Mutation p.E118K 0.36 tolerated(0.09) benign(0.288) TCGA-E2-A10C-01 1 32124168 32124168 C G COL16A1 Missense_Mutation p.G1314A 0.21 unknown(0) TCGA-E2-A10C-01 1 32950879 32950879 G C ZBTB8B Missense_Mutation p.E450Q 0.38 deleterious(0.03) possibly_damaging(0.719) TCGA-E2-A10C-01 1 44437827 44437827 C T DPH2 Intron 0.26 TCGA-E2-A10C-01 1 52991817 52991817 C T ZCCHC11 Missense_Mutation p.E46K 0.20 deleterious_low_confidence(0.02) benign(0.053) TCGA-E2-A10C-01 1 53668050 53668050 G A CPT2 Missense_Mutation p.E97K 0.28 tolerated(0.71) benign(0.008) TCGA-E2-A10C-01 1 55145599 55145599 G A MROH7 Silent p.L754L 0.25 TCGA-E2-A10C-01 1 57189333 57189333 G A C1orf168 Silent p.F634F 0.17 TCGA-E2-A10C-01 1 6195315 6195315 G A CHD5 Missense_Mutation p.R949W 0.24 deleterious(0) probably_damaging(0.999) TCGA-E2-A10C-01 1 6272450 6272450 G C RNF207 Missense_Mutation p.E486Q 0.12 tolerated(0.06) benign(0.191) TCGA-E2-A10C-01 1 75622602 75622602 C T LHX8 Missense_Mutation p.R279C 0.28 deleterious(0) probably_damaging(0.98) TCGA-E2-A10C-01 1 89473327 89473327 C G GBP3 3'UTR 0.18 TCGA-E2-A10C-01 20 1559202 1559202 C G RP4-576H24.4 Missense_Mutation p.G71A 0.32 deleterious(0.01) benign(0.385) TCGA-E2-A10C-01 20 17956500 17956500 G A MGME1 Missense_Mutation p.E229K 0.18 tolerated(0.29) benign(0.056) TCGA-E2-A10C-01 20 23728509 23728509 C T CST1 Missense_Mutation p.E124K 0.19 tolerated(0.39) probably_damaging(0.999) TCGA-E2-A10C-01 20 2463696 2463696 C G ZNF343 3'UTR 0.23 TCGA-E2-A10C-01 20 30898618 30898618 C T KIF3B Silent p.V346V 0.18 TCGA-E2-A10C-01 20 32295624 32295624 G A PXMP4 Missense_Mutation p.S176F 0.25 deleterious(0.02) benign(0.125) TCGA-E2-A10C-01 20 33568478 33568478 C T MYH7B Missense_Mutation p.S189L 0.24 benign(0.013) TCGA-E2-A10C-01 20 3655266 3655266 G C ADAM33 Nonsense_Mutation p.S162* 0.24 TCGA-E2-A10C-01 20 3677446 3677446 G A SIGLEC1 Silent p.L824L 0.29 TCGA-E2-A10C-01 20 40045305 40045305 G A CHD6 Nonsense_Mutation p.R2137* 0.32 TCGA-E2-A10C-01 20 44708029 44708029 C T NCOA5 Missense_Mutation p.R12Q 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-E2-A10C-01 20 46365493 46365493 C T SULF2 Silent p.E123E 0.22 TCGA-E2-A10C-01 20 54941255 54941255 G C FAM210B Missense_Mutation p.R164T 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A10C-01 20 57876668 57876668 G A EDN3 Missense_Mutation p.E86K 0.18 tolerated(0.49) benign(0.001) TCGA-E2-A10C-01 20 58562505 58562505 C T CDH26 Intron 0.14 TCGA-E2-A10C-01 20 61512703 61512703 G A DIDO1 Silent p.F1535F 0.12 TCGA-E2-A10C-01 20 6759581 6759581 C T BMP2 Nonsense_Mutation p.Q346* 0.21 TCGA-E2-A10C-01 21 10941954 10941954 G A TPTE Missense_Mutation p.S250L 0.12 deleterious(0) probably_damaging(0.964) TCGA-E2-A10C-01 21 27107257 27107257 C T ATP5J Missense_Mutation p.D4N 0.11 tolerated_low_confidence(0.18) benign(0.047) TCGA-E2-A10C-01 21 31587809 31587809 G A CLDN8 Silent p.I145I 0.27 TCGA-E2-A10C-01 21 34121010 34121010 C G PAXBP1 Splice_Site p.X575_splice 0.15 TCGA-E2-A10C-01 21 43222950 43222950 G A PRDM15 Silent p.S1321S 0.23 TCGA-E2-A10C-01 21 45959118 45959118 G A KRTAP10-1 3'UTR 0.21 TCGA-E2-A10C-01 21 46086781 46086781 G A KRTAP12-2 Missense_Mutation p.S8L 0.21 deleterious(0) unknown(0) TCGA-E2-A10C-01 21 48084230 48084230 C T PRMT2 Silent p.I431I 0.27 TCGA-E2-A10C-01 22 16256645 16256645 G A POTEH 3'UTR 0.13 TCGA-E2-A10C-01 22 17072534 17072534 T G CCT8L2 Missense_Mutation p.T303P 0.21 deleterious(0.01) possibly_damaging(0.69) TCGA-E2-A10C-01 22 22707577 22707577 C T IGLV5-48 Silent p.F55F 0.27 TCGA-E2-A10C-01 22 30415818 30415818 G A MTMR3 Missense_Mutation p.E724K 0.17 tolerated_low_confidence(0.35) benign(0.027) TCGA-E2-A10C-01 22 32019736 32019736 G C PISD Silent p.L51L 0.20 TCGA-E2-A10C-01 22 41752441 41752441 G A ZC3H7B Silent p.E826E 0.25 TCGA-E2-A10C-01 22 43231396 43231396 G A ARFGAP3 Missense_Mutation p.S122F 0.17 deleterious(0.01) possibly_damaging(0.895) TCGA-E2-A10C-01 22 43231430 43231430 G A ARFGAP3 Nonsense_Mutation p.Q111* 0.18 TCGA-E2-A10C-01 22 50279480 50279480 G A ZBED4 Missense_Mutation p.E724K 0.17 deleterious(0) probably_damaging(0.967) TCGA-E2-A10C-01 22 51018232 51018232 C T CHKB Missense_Mutation p.E319K 0.20 tolerated(0.07) benign(0.324) TCGA-E2-A10C-01 2 10192590 10192590 G C KLF11 Missense_Mutation p.E499Q 0.24 tolerated(0.13) possibly_damaging(0.827) TCGA-E2-A10C-01 2 107007527 107007527 C T PLGLA RNA 0.05 TCGA-E2-A10C-01 2 114483002 114483002 G A SLC35F5 Silent p.I401I 0.21 TCGA-E2-A10C-01 2 129026048 129026048 G C HS6ST1 Missense_Mutation p.F308L 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-E2-A10C-01 2 135957946 135957946 C A ZRANB3 Missense_Mutation p.G1069V 0.23 deleterious(0) possibly_damaging(0.796) TCGA-E2-A10C-01 2 158272514 158272514 G A CYTIP Missense_Mutation p.S252F 0.13 tolerated(0.1) probably_damaging(0.914) TCGA-E2-A10C-01 2 161135089 161135089 C G RBMS1 Missense_Mutation p.M344I 0.17 deleterious(0) benign(0.146) TCGA-E2-A10C-01 2 1653128 1653128 G A PXDN Silent p.V808V 0.21 TCGA-E2-A10C-01 2 165946941 165946941 G A SCN3A Nonsense_Mutation p.Q1908* 0.24 TCGA-E2-A10C-01 2 168102468 168102468 C G XIRP2 Silent p.V1522V 0.20 TCGA-E2-A10C-01 2 168105425 168105425 C T XIRP2 Missense_Mutation p.S2508L 0.15 benign(0.027) TCGA-E2-A10C-01 2 179452019 179452019 C T TTN Missense_Mutation p.E21307K 0.14 TCGA-E2-A10C-01 2 196699060 196699060 C G DNAH7 Missense_Mutation p.M2990I 0.17 deleterious(0.03) possibly_damaging(0.732) TCGA-E2-A10C-01 2 196825113 196825113 G C DNAH7 Missense_Mutation p.S921C 0.14 deleterious(0) possibly_damaging(0.563) TCGA-E2-A10C-01 2 20451267 20451267 G A PUM2 3'UTR 0.19 TCGA-E2-A10C-01 2 207024703 207024703 C A EEF1B2 5'UTR 0.22 TCGA-E2-A10C-01 2 210518072 210518072 G A MAP2 Missense_Mutation p.E60K 0.09 tolerated_low_confidence(0.05) benign(0.275) TCGA-E2-A10C-01 2 220501551 220501551 C T SLC4A3 Silent p.L857L 0.23 TCGA-E2-A10C-01 2 230038 230038 C G SH3YL1 Missense_Mutation p.E237Q 0.25 tolerated(0.43) benign(0.004) TCGA-E2-A10C-01 2 231940241 231940241 G C PSMD1 Missense_Mutation p.E300Q 0.23 tolerated(0.24) benign(0.03) TCGA-E2-A10C-01 2 26805698 26805698 G A CIB4 Silent p.F174F 0.22 TCGA-E2-A10C-01 2 27460410 27460410 G A CAD Silent p.Q1520Q 0.15 TCGA-E2-A10C-01 2 29217640 29217640 C T FAM179A 5'UTR 0.27 TCGA-E2-A10C-01 2 30381698 30381698 G C YPEL5 Missense_Mutation p.D119H 0.13 deleterious_low_confidence(0) benign(0.341) TCGA-E2-A10C-01 2 30974021 30974021 G C CAPN13 Nonsense_Mutation p.S395* 0.26 TCGA-E2-A10C-01 2 3483128 3483128 G A TRAPPC12 Missense_Mutation p.E702K 0.24 deleterious(0) probably_damaging(0.997) TCGA-E2-A10C-01 2 39050344 39050344 G C DHX57 Missense_Mutation p.P1028A 0.11 deleterious(0) probably_damaging(0.999) TCGA-E2-A10C-01 2 43452575 43452575 G C ZFP36L2 Missense_Mutation p.S123W 0.17 deleterious(0) probably_damaging(0.98) TCGA-E2-A10C-01 2 43452604 43452604 G A ZFP36L2 Silent p.L113L 0.19 TCGA-E2-A10C-01 2 43453450 43453450 G C ZFP36L2 Missense_Mutation p.S2W 0.27 deleterious(0) probably_damaging(0.98) TCGA-E2-A10C-01 2 44121732 44121732 C G LRPPRC Missense_Mutation p.E1313Q 0.16 deleterious(0.03) benign(0.141) TCGA-E2-A10C-01 2 48915942 48915942 C G LHCGR Missense_Mutation p.E332Q 0.17 tolerated(0.07) benign(0.224) TCGA-E2-A10C-01 2 55126862 55126862 C A EML6 Missense_Mutation p.R1023S 0.30 deleterious(0) probably_damaging(0.993) TCGA-E2-A10C-01 2 61715794 61715794 C T XPO1 Missense_Mutation p.R712K 0.21 tolerated(0.23) benign(0.059) TCGA-E2-A10C-01 2 63824531 63824531 A T MDH1 Splice_Site p.X85_splice 0.18 TCGA-E2-A10C-01 2 63824532 63824532 G A MDH1 Splice_Site p.X85_splice 0.18 TCGA-E2-A10C-01 2 74141897 74141897 C T ACTG2 Missense_Mutation p.S235F 0.19 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-E2-A10C-01 2 74594520 74594520 G A DCTN1 Nonsense_Mutation p.Q738* 0.20 TCGA-E2-A10C-01 2 80097054 80097054 G T CTNNA2 Missense_Mutation p.R193I 0.15 deleterious(0) probably_damaging(0.997) TCGA-E2-A10C-01 2 96936858 96936858 G A CIAO1 Silent p.L263L 0.32 TCGA-E2-A10C-01 2 97869808 97869808 C G ANKRD36 Missense_Mutation p.S988C 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-E2-A10C-01 3 10107574 10107574 G T FANCD2 Nonsense_Mutation p.E766* 0.21 TCGA-E2-A10C-01 3 108407718 108407718 C T DZIP3 Silent p.L1155L 0.20 TCGA-E2-A10C-01 3 112080467 112080467 G A CD200 3'UTR 0.24 TCGA-E2-A10C-01 3 115529227 115529227 G A LSAMP Silent p.I318I 0.14 TCGA-E2-A10C-01 3 12866971 12866971 G C CAND2 Missense_Mutation p.E1015Q 0.31 tolerated(0.16) benign(0.053) TCGA-E2-A10C-01 3 14163568 14163568 G A CHCHD4 5'UTR 0.41 TCGA-E2-A10C-01 3 142840898 142840898 G A CHST2 Missense_Mutation p.D414N 0.26 tolerated(0.29) possibly_damaging(0.498) TCGA-E2-A10C-01 3 169587605 169587605 G T LRRC31 5'UTR 0.27 TCGA-E2-A10C-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-E2-A10C-01 3 181430398 181430398 G A SOX2 Missense_Mutation p.E84K 0.24 deleterious(0) probably_damaging(0.992) TCGA-E2-A10C-01 3 20167519 20167519 G T KAT2B Silent p.L512L 0.21 TCGA-E2-A10C-01 3 28562576 28562576 G A ZCWPW2 Missense_Mutation p.G293E 0.25 tolerated_low_confidence(1) benign(0) TCGA-E2-A10C-01 3 32280554 32280554 C T CMTM8 Silent p.F30F 0.16 TCGA-E2-A10C-01 3 38755529 38755529 C T SCN10A Missense_Mutation p.E1242K 0.27 deleterious(0.05) benign(0.026) TCGA-E2-A10C-01 3 43095055 43095055 G C FAM198A Missense_Mutation p.E445Q 0.16 deleterious(0.02) possibly_damaging(0.837) TCGA-E2-A10C-01 3 46620626 46620626 G A TDGF1 Missense_Mutation p.G26E 0.22 tolerated(0.3) benign(0.059) TCGA-E2-A10C-01 3 46937242 46937242 G A PTH1R Missense_Mutation p.D66N 0.25 tolerated(0.2) benign(0.001) TCGA-E2-A10C-01 3 47385248 47385248 G A KLHL18 Silent p.R514R 0.22 TCGA-E2-A10C-01 3 48040186 48040186 C T MAP4 Silent p.E55E 0.27 TCGA-E2-A10C-01 3 49724598 49724598 G C MST1 Missense_Mutation p.I197M 0.37 deleterious(0) probably_damaging(0.98) TCGA-E2-A10C-01 3 49933743 49933743 C T MST1R Missense_Mutation p.R845Q 0.36 tolerated(0.64) benign(0.004) TCGA-E2-A10C-01 3 52745646 52745646 C G NEK4 3'UTR 0.28 TCGA-E2-A10C-01 3 62543150 62543150 C G CADPS Missense_Mutation p.E561D 0.24 deleterious(0.02) benign(0.05) TCGA-E2-A10C-01 3 77695247 77695247 C G ROBO2 3'UTR 0.15 TCGA-E2-A10C-01 3 98304499 98304499 C T CPOX Missense_Mutation p.D320N 0.28 deleterious(0) probably_damaging(1) TCGA-E2-A10C-01 4 113351985 113351985 G C ALPK1 Missense_Mutation p.D428H 0.21 deleterious(0) probably_damaging(0.97) TCGA-E2-A10C-01 4 122825623 122825623 C T TRPC3 Missense_Mutation p.E703K 0.20 tolerated(0.16) possibly_damaging(0.673) TCGA-E2-A10C-01 4 169183193 169183193 C G DDX60 Missense_Mutation p.K1077N 0.21 deleterious(0) probably_damaging(1) TCGA-E2-A10C-01 4 17694927 17694927 C G FAM184B Missense_Mutation p.E496Q 0.14 deleterious(0.05) probably_damaging(0.918) TCGA-E2-A10C-01 4 1976719 1976719 G A WHSC1 Missense_Mutation p.D1168N 0.19 tolerated(0.05) probably_damaging(0.988) TCGA-E2-A10C-01 4 2659551 2659560 CGCATGTTAA - FAM193A Frame_Shift_Del p.R154Qfs*17 0.15 TCGA-E2-A10C-01 4 2951687 2951687 C G NOP14 Missense_Mutation p.R419T 0.17 deleterious(0.03) benign(0.315) TCGA-E2-A10C-01 4 2951699 2951699 C T NOP14 Missense_Mutation p.G415E 0.19 tolerated(1) benign(0.08) TCGA-E2-A10C-01 4 2951877 2951877 C T NOP14 Missense_Mutation p.E356K 0.19 tolerated(0.17) benign(0.026) TCGA-E2-A10C-01 4 39310296 39310296 G A RFC1 Silent p.L615L 0.18 TCGA-E2-A10C-01 4 39310356 39310356 G C RFC1 Silent p.L595L 0.19 TCGA-E2-A10C-01 4 65175565 65175565 T C TECRL Silent p.T212T 0.31 TCGA-E2-A10C-01 4 71027346 71027346 C T C4orf40 Intron 0.13 TCGA-E2-A10C-01 4 75174841 75174841 G A EPGN Silent p.V25V 0.13 TCGA-E2-A10C-01 4 79522719 79522719 G C ANXA3 Missense_Mutation p.L262F 0.23 deleterious(0) benign(0.029) TCGA-E2-A10C-01 5 1063979 1063979 C T SLC12A7 Missense_Mutation p.E907K 0.15 tolerated(0.05) benign(0.035) TCGA-E2-A10C-01 5 11018106 11018106 G C CTNND2 Missense_Mutation p.L1022V 0.19 deleterious(0) probably_damaging(0.972) TCGA-E2-A10C-01 5 1260685 1260685 G C TERT Silent p.L958L 0.20 TCGA-E2-A10C-01 5 130857085 130857085 G C RAPGEF6 Missense_Mutation p.Q209E 0.28 deleterious(0.04) probably_damaging(0.983) TCGA-E2-A10C-01 5 138717666 138717666 C T SLC23A1 Missense_Mutation p.D75N 0.25 tolerated(0.21) benign(0.026) TCGA-E2-A10C-01 5 140391897 140391897 C A PCDHAC1 3'UTR 0.20 TCGA-E2-A10C-01 5 140730032 140730032 G A PCDHGB1 Missense_Mutation p.E69K 0.29 tolerated(0.15) benign(0.02) TCGA-E2-A10C-01 5 140790173 140790173 G C PCDHGB6 Missense_Mutation p.E802Q 0.18 tolerated(0.27) benign(0.009) TCGA-E2-A10C-01 5 14462913 14462913 C T TRIO Missense_Mutation p.S1849F 0.09 probably_damaging(0.987) TCGA-E2-A10C-01 5 150696593 150696593 C T SLC36A2 Missense_Mutation p.V413M 0.18 deleterious(0.02) possibly_damaging(0.737) TCGA-E2-A10C-01 5 158697440 158697440 G A UBLCP1 Missense_Mutation p.E107K 0.19 tolerated(0.55) benign(0.003) TCGA-E2-A10C-01 5 31409170 31409170 G C DROSHA Missense_Mutation p.L1283V 0.20 tolerated(0.53) benign(0.055) TCGA-E2-A10C-01 5 32000267 32000267 G A PDZD2 Missense_Mutation p.D382N 0.20 deleterious(0.01) probably_damaging(0.939) TCGA-E2-A10C-01 5 37180152 37180152 C T C5orf42 Missense_Mutation p.E1902K 0.11 tolerated(0.08) benign(0.081) TCGA-E2-A10C-01 5 38504178 38504178 G C LIFR Nonsense_Mutation p.S446* 0.11 TCGA-E2-A10C-01 5 39375157 39375157 C G DAB2 Missense_Mutation p.E759D 0.22 tolerated(1) benign(0) TCGA-E2-A10C-01 5 41917460 41917460 G C C5orf51 3'UTR 0.14 TCGA-E2-A10C-01 5 75906999 75906999 G A IQGAP2 Silent p.Q504Q 0.23 TCGA-E2-A10C-01 5 76700558 76700558 C T PDE8B Silent p.F408F 0.19 TCGA-E2-A10C-01 5 78697773 78697773 C A HOMER1 Missense_Mutation p.W211C 0.30 deleterious(0) probably_damaging(0.999) TCGA-E2-A10C-01 5 78697782 78697782 C T HOMER1 Silent p.V208V 0.30 TCGA-E2-A10C-01 6 10419791 10419791 C T TFAP2A 5'Flank 0.14 TCGA-E2-A10C-01 6 109814560 109814560 C T AK9 3'UTR 0.23 TCGA-E2-A10C-01 6 116757151 116757151 C T DSE Missense_Mutation p.S507L 0.17 tolerated(0.23) benign(0.173) TCGA-E2-A10C-01 6 117232129 117232129 C T RFX6 Missense_Mutation p.S235L 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-E2-A10C-01 6 132938838 132938838 C A TAAR2 Silent p.S169S 0.21 TCGA-E2-A10C-01 6 146126650 146126650 C T FBXO30 Missense_Mutation p.D298N 0.13 tolerated(0.61) benign(0.001) TCGA-E2-A10C-01 6 147660341 147660341 G A STXBP5 Missense_Mutation p.D725N 0.18 tolerated(0.35) benign(0.029) TCGA-E2-A10C-01 6 152774643 152774643 C T SYNE1 Intron 0.44 TCGA-E2-A10C-01 6 160218324 160218324 G A MRPL18 Missense_Mutation p.R82Q 0.20 tolerated(0.19) benign(0.391) TCGA-E2-A10C-01 6 160240082 160240082 G C PNLDC1 Missense_Mutation p.Q443H 0.20 tolerated(0.07) possibly_damaging(0.847) TCGA-E2-A10C-01 6 25510753 25510753 C T LRRC16A Missense_Mutation p.S499F 0.21 tolerated(0.12) probably_damaging(0.924) TCGA-E2-A10C-01 6 26021186 26021186 C T HIST1H3A 3'UTR 0.21 TCGA-E2-A10C-01 6 26032049 26032049 C G HIST1H3B Missense_Mutation p.K80N 0.31 deleterious_low_confidence(0.04) benign(0.188) TCGA-E2-A10C-01 6 26033433 26033433 C G HIST1H2AB Missense_Mutation p.E122Q 0.16 tolerated_low_confidence(0.07) benign(0.116) TCGA-E2-A10C-01 6 27834864 27834864 C A HIST1H1B Silent p.A148A 0.19 TCGA-E2-A10C-01 6 32190850 32190850 C G NOTCH4 Silent p.G29G 0.18 TCGA-E2-A10C-01 6 32904950 32904950 C G HLA-DMB Missense_Mutation p.W207C 0.13 deleterious(0) probably_damaging(0.997) TCGA-E2-A10C-01 6 33169325 33169325 C G SLC39A7 Silent p.L101L 0.22 TCGA-E2-A10C-01 6 69349121 69349121 G A BAI3 Missense_Mutation p.R185K 0.23 tolerated(0.95) benign(0) TCGA-E2-A10C-01 6 82927697 82927697 C G IBTK Missense_Mutation p.R469T 0.22 tolerated(0.06) benign(0.024) TCGA-E2-A10C-01 6 86197154 86197154 C G NT5E Missense_Mutation p.Q351E 0.22 tolerated(0.75) benign(0.002) TCGA-E2-A10C-01 6 88854999 88854999 C T CNR1 5'UTR 0.26 TCGA-E2-A10C-01 7 100198284 100198284 C T FBXO24 Missense_Mutation p.P540L 0.08 tolerated_low_confidence(0.4) possibly_damaging(0.713) TCGA-E2-A10C-01 7 100363041 100363041 C T ZAN Missense_Mutation p.S1445L 0.18 unknown(0) TCGA-E2-A10C-01 7 101747716 101747716 G C CUX1 Missense_Mutation p.Q180H 0.11 tolerated(0.33) unknown(0) TCGA-E2-A10C-01 7 102915888 102915888 G A DPY19L2P2 RNA 0.22 TCGA-E2-A10C-01 7 11676319 11676319 G A THSD7A Nonsense_Mutation p.Q154* 0.16 TCGA-E2-A10C-01 7 122635653 122635653 G A TAS2R16 Silent p.I12I 0.27 TCGA-E2-A10C-01 7 128487833 128487833 C T FLNC Silent p.V1457V 0.14 TCGA-E2-A10C-01 7 132193072 132193072 C G PLXNA4 Silent p.L127L 0.17 TCGA-E2-A10C-01 7 134260625 134260625 C T AKR1B15 Missense_Mutation p.S230F 0.16 deleterious(0.02) benign(0.3) TCGA-E2-A10C-01 7 134719159 134719159 G A AGBL3 Missense_Mutation p.D273N 0.08 tolerated(0.09) benign(0.059) TCGA-E2-A10C-01 7 135261125 135261125 C T NUP205 Nonsense_Mutation p.Q151* 0.15 TCGA-E2-A10C-01 7 141736724 141736724 C G MGAM Silent p.L726L 0.15 TCGA-E2-A10C-01 7 143657556 143657556 C T OR2F1 Nonsense_Mutation p.Q165* 0.15 TCGA-E2-A10C-01 7 143657696 143657696 C T OR2F1 Silent p.F211F 0.18 TCGA-E2-A10C-01 7 143657793 143657793 C G OR2F1 Missense_Mutation p.H244D 0.19 deleterious(0) probably_damaging(0.998) TCGA-E2-A10C-01 7 143807338 143807338 C T OR2A2 Silent p.L221L 0.24 TCGA-E2-A10C-01 7 144320315 144320315 C T TPK1 Missense_Mutation p.D100N 0.17 deleterious(0) probably_damaging(0.999) TCGA-E2-A10C-01 7 150389612 150389612 G C GIMAP2 Missense_Mutation p.D80H 0.19 deleterious(0.05) probably_damaging(1) TCGA-E2-A10C-01 7 150813883 150813883 C T AGAP3 Missense_Mutation p.S112L 0.28 deleterious(0) possibly_damaging(0.651) TCGA-E2-A10C-01 7 22769291 22769291 C T IL6 Intron 0.14 TCGA-E2-A10C-01 7 23766900 23766900 G A STK31 Missense_Mutation p.R97K 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-E2-A10C-01 7 24749906 24749906 C G DFNA5 Missense_Mutation p.D267H 0.22 tolerated(0.28) benign(0.257) TCGA-E2-A10C-01 7 26251371 26251371 G A CBX3 Missense_Mutation p.M140I 0.18 tolerated(0.35) benign(0.063) TCGA-E2-A10C-01 7 27237824 27237824 G C HOXA13 Missense_Mutation p.T387S 0.16 tolerated(0.84) benign(0.008) TCGA-E2-A10C-01 7 2979488 2979488 C T CARD11 Silent p.L253L 0.11 TCGA-E2-A10C-01 7 45124506 45124506 C T NACAD Missense_Mutation p.E425K 0.17 deleterious(0.02) benign(0.026) TCGA-E2-A10C-01 7 5541259 5541259 G A FBXL18 Missense_Mutation p.S214L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-E2-A10C-01 7 5982982 5982982 C G RSPH10B Missense_Mutation p.K577N 0.11 tolerated(0.09) benign(0.026) TCGA-E2-A10C-01 7 72040521 72040521 G A TYW1B Nonsense_Mutation p.Q283* 0.12 TCGA-E2-A10C-01 7 72414040 72414040 G A POM121 Missense_Mutation p.E905K 0.19 tolerated(0.05) benign(0.201) TCGA-E2-A10C-01 7 72849818 72849818 G A FZD9 Missense_Mutation p.R494Q 0.19 tolerated(0.4) possibly_damaging(0.553) TCGA-E2-A10C-01 7 76023178 76023178 G C SRCRB4D Silent p.L330L 0.19 TCGA-E2-A10C-01 7 92732458 92732458 G A SAMD9 Missense_Mutation p.H985Y 0.19 deleterious(0) probably_damaging(0.987) TCGA-E2-A10C-01 7 94039828 94039828 C A COL1A2 Missense_Mutation p.P396T 0.07 probably_damaging(0.967) TCGA-E2-A10C-01 7 98515131 98515131 G A TRRAP Silent p.L817L 0.09 TCGA-E2-A10C-01 7 98529178 98529178 G C TRRAP Missense_Mutation p.E1248Q 0.15 benign(0.034) TCGA-E2-A10C-01 7 98983370 98983370 C G ARPC1B Missense_Mutation p.I11M 0.17 deleterious(0) probably_damaging(0.994) TCGA-E2-A10C-01 7 99758286 99758286 G C GAL3ST4 Silent p.V242V 0.15 TCGA-E2-A10C-01 8 110400725 110400725 G A PKHD1L1 Splice_Site p.X190_splice 0.13 TCGA-E2-A10C-01 8 121463465 121463465 G A MTBP Missense_Mutation p.E110K 0.14 deleterious(0.04) possibly_damaging(0.908) TCGA-E2-A10C-01 8 133492490 133492490 A C KCNQ3 Missense_Mutation p.V97G 0.15 tolerated(0.25) benign(0.054) TCGA-E2-A10C-01 8 135612498 135612498 G C ZFAT Intron 0.16 TCGA-E2-A10C-01 8 143957264 143957264 C T CYP11B1 Missense_Mutation p.E329K 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-E2-A10C-01 8 48647973 48647973 C T SPIDR Silent p.I903I 0.14 TCGA-E2-A10C-01 8 49833963 49833963 G A SNAI2 5'UTR 0.09 TCGA-E2-A10C-01 8 54163365 54163365 G A OPRK1 Missense_Mutation p.S78L 0.11 tolerated(0.4) possibly_damaging(0.453) TCGA-E2-A10C-01 8 59750744 59750744 C A TOX Missense_Mutation p.D274Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-E2-A10C-01 8 66617023 66617023 G C MTFR1 Missense_Mutation p.E126Q 0.08 tolerated(0.1) benign(0.084) TCGA-E2-A10C-01 8 70981480 70981480 G A PRDM14 Silent p.L206L 0.13 TCGA-E2-A10C-01 8 75898249 75898249 C T CRISPLD1 Silent p.L9L 0.12 TCGA-E2-A10C-01 8 85799846 85799846 G T RALYL Missense_Mutation p.Q244H 0.19 tolerated(0.16) benign(0.025) TCGA-E2-A10C-01 8 88249292 88249292 C G CNBD1 Missense_Mutation p.F241L 0.20 tolerated(0.87) benign(0.001) TCGA-E2-A10C-01 8 88886087 88886087 C T DCAF4L2 Missense_Mutation p.R38K 0.12 tolerated(0.23) benign(0.001) TCGA-E2-A10C-01 8 89086949 89086949 C G MMP16 Missense_Mutation p.R369T 0.17 deleterious(0) probably_damaging(0.927) TCGA-E2-A10C-01 8 95174362 95174362 G C CDH17 Missense_Mutation p.I437M 0.07 deleterious(0) probably_damaging(0.976) TCGA-E2-A10C-01 8 95262496 95262496 C G GEM 3'UTR 0.12 TCGA-E2-A10C-01 9 100070026 100070026 C T CCDC180 5'UTR 0.29 TCGA-E2-A10C-01 9 117188600 117188600 T A DFNB31 Missense_Mutation p.I353F 0.22 deleterious(0.01) possibly_damaging(0.529) TCGA-E2-A10C-01 9 125622277 125622277 G C RC3H2 Missense_Mutation p.P590A 0.20 deleterious(0.01) benign(0.006) TCGA-E2-A10C-01 9 125652509 125652509 C G RC3H2 Intron 0.24 TCGA-E2-A10C-01 9 132637700 132637700 C T USP20 Silent p.F720F 0.07 TCGA-E2-A10C-01 9 135933239 135933239 G C GTF3C5 Missense_Mutation p.E485Q 0.30 tolerated(0.21) benign(0.012) TCGA-E2-A10C-01 9 139393424 139393424 G A NOTCH1 Missense_Mutation p.A2036V 0.21 deleterious(0) probably_damaging(0.963) TCGA-E2-A10C-01 9 34458942 34458942 G A DNAI1 5'UTR 0.25 TCGA-E2-A10C-01 9 35068004 35068004 C G VCP Missense_Mutation p.K62N 0.07 deleterious(0.02) possibly_damaging(0.837) TCGA-E2-A10C-01 9 37441978 37441978 G A ZBTB5 Missense_Mutation p.H191Y 0.20 deleterious(0) benign(0.255) TCGA-E2-A10C-01 9 73424946 73424946 C G TRPM3 Intron 0.26 TCGA-E2-A10C-01 9 85624562 85624562 G A RASEF Missense_Mutation p.T318I 0.16 tolerated(0.29) benign(0.003) TCGA-E2-A10C-01 9 86587019 86587019 T A HNRNPK Missense_Mutation p.D244V 0.15 deleterious(0) probably_damaging(0.999) TCGA-E2-A10C-01 9 96326563 96326563 C G FAM120A Nonsense_Mutation p.S1033* 0.32 TCGA-E2-A10C-01 X 102338576 102338576 C G NXF3 Missense_Mutation p.L132F 0.20 tolerated(0.17) possibly_damaging(0.873) TCGA-E2-A10C-01 X 103499124 103499124 C T ESX1 Missense_Mutation p.D73N 0.23 tolerated(0.99) benign(0.002) TCGA-E2-A10C-01 X 106171608 106171608 C G CLDN2 Silent p.L50L 0.23 TCGA-E2-A10C-01 X 106171827 106171827 C G CLDN2 Silent p.V123V 0.23 TCGA-E2-A10C-01 X 110970088 110970088 G A ALG13 Missense_Mutation p.R594Q 0.18 deleterious(0) probably_damaging(0.992) TCGA-E2-A10C-01 X 11139943 11139943 G A HCCS 3'UTR 0.26 TCGA-E2-A10C-01 X 123182867 123182867 C G STAG2 Missense_Mutation p.Q278E 0.22 tolerated(0.06) benign(0.041) TCGA-E2-A10C-01 X 134427833 134427833 C T ZNF75D Silent p.L78L 0.21 TCGA-E2-A10C-01 X 134715540 134715540 C A DDX26B Silent p.I855I 0.19 TCGA-E2-A10C-01 X 135309524 135309524 T A MAP7D3 Missense_Mutation p.K651N 0.21 deleterious(0.02) probably_damaging(0.971) TCGA-E2-A10C-01 X 135593186 135593186 G A HTATSF1 Missense_Mutation p.E428K 0.21 deleterious_low_confidence(0.02) benign(0.073) TCGA-E2-A10C-01 X 136112924 136112924 C T GPR101 Missense_Mutation p.E304K 0.22 tolerated_low_confidence(0.55) benign(0.005) TCGA-E2-A10C-01 X 153001904 153001904 C T ABCD1 Nonsense_Mutation p.Q444* 0.24 TCGA-E2-A10C-01 X 154299774 154299774 G C BRCC3 5'Flank 0.15 TCGA-E2-A10C-01 X 17818567 17818567 G A RAI2 Missense_Mutation p.R522W 0.21 deleterious(0) unknown(0) TCGA-E2-A10C-01 X 3242463 3242463 C A MXRA5 Silent p.V421V 0.18 TCGA-E2-A10C-01 X 3248697 3248697 G A MXRA5 Silent p.L102L 0.25 TCGA-E2-A10C-01 X 36379490 36379490 C T CXorf30 Missense_Mutation p.S412F 0.14 deleterious(0) probably_damaging(0.974) TCGA-E2-A10C-01 X 48841752 48841752 C T GRIPAP1 Missense_Mutation p.E369K 0.19 benign(0.379) TCGA-E2-A10C-01 X 51234405 51234405 C T NUDT11 3'UTR 0.25 TCGA-E2-A10C-01 X 53267381 53267381 C T IQSEC2 Missense_Mutation p.D1075N 0.21 deleterious(0) probably_damaging(0.955) TCGA-E2-A10C-01 X 57313197 57313197 C T FAAH2 5'UTR 0.18 TCGA-E2-A10C-01 X 63410170 63410170 C T AMER1 Missense_Mutation p.M999I 0.18 tolerated(0.2) benign(0) TCGA-E2-A10C-01 X 69650936 69650936 C T GDPD2 Nonsense_Mutation p.Q474* 0.20 TCGA-E2-A10C-01 X 74517354 74517354 G A UPRT Silent p.E176E 0.21 TCGA-E2-A10C-01 X 79932203 79932203 C T BRWD3 Missense_Mutation p.E1772K 0.33 tolerated_low_confidence(0.08) unknown(0) TCGA-E2-A10F-01 10 65380602 65380602 G T REEP3 Silent p.V247V 0.20 TCGA-E2-A10F-01 11 134179638 134179638 G A GLB1L3 Silent p.S360S 0.23 TCGA-E2-A10F-01 11 78775887 78775887 C T TENM4 Missense_Mutation p.R130H 0.26 tolerated_low_confidence(0.07) benign(0.231) TCGA-E2-A10F-01 12 67696173 67696173 G A CAND1 Silent p.L357L 0.25 TCGA-E2-A10F-01 12 77252621 77252621 A G CSRP2 3'UTR 0.13 TCGA-E2-A10F-01 16 68845685 68845686 - T CDH1 Frame_Shift_Ins p.D313* 0.28 TCGA-E2-A10F-01 17 27014157 27014157 C T SUPT6H Missense_Mutation p.R918W 0.34 deleterious(0) probably_damaging(0.999) TCGA-E2-A10F-01 19 1802626 1802626 G A ATP8B3 Missense_Mutation p.A308V 0.26 tolerated(0.15) benign(0.294) TCGA-E2-A10F-01 19 22940742 22940742 C A ZNF99 Missense_Mutation p.A657S 0.35 tolerated(0.08) probably_damaging(0.925) TCGA-E2-A10F-01 19 24270046 24270046 C T ZNF254 5'UTR 0.33 TCGA-E2-A10F-01 1 158299878 158299878 G C CD1B Missense_Mutation p.S124C 0.21 tolerated(0.1) benign(0.16) TCGA-E2-A10F-01 1 40705088 40705088 C T RLF Missense_Mutation p.R1572C 0.31 deleterious(0) probably_damaging(0.995) TCGA-E2-A10F-01 1 6659504 6659504 C T KLHL21 Missense_Mutation p.D344N 0.15 tolerated(0.32) probably_damaging(0.98) TCGA-E2-A10F-01 20 58342410 58342410 G A PHACTR3 Silent p.P237P 0.24 TCGA-E2-A10F-01 2 198266493 198266493 A T SF3B1 Missense_Mutation p.D781E 0.20 tolerated(0.07) benign(0.37) TCGA-E2-A10F-01 2 198949560 198949560 G A PLCL1 Missense_Mutation p.R440Q 0.25 deleterious(0) probably_damaging(1) TCGA-E2-A10F-01 2 25358396 25358396 C T EFR3B Missense_Mutation p.R458C 0.28 deleterious(0) possibly_damaging(0.502) TCGA-E2-A10F-01 3 136088052 136088052 G A STAG1 Nonsense_Mutation p.Q815* 0.33 TCGA-E2-A10F-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.21 tolerated(0.36) benign(0.4) TCGA-E2-A10F-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.25 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A10F-01 3 39185716 39185716 C T CSRNP1 Missense_Mutation p.R231H 0.33 deleterious(0) probably_damaging(0.999) TCGA-E2-A10F-01 3 48694417 48694417 T C CELSR3 Silent p.V1371V 0.24 TCGA-E2-A10F-01 5 131877466 131877466 C T IL5 3'UTR 0.30 TCGA-E2-A10F-01 5 140553401 140553401 G A PCDHB7 Missense_Mutation p.G329R 0.25 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-E2-A10F-01 5 68728474 68728474 A G MARVELD2 Missense_Mutation p.K435E 0.17 deleterious(0.02) possibly_damaging(0.839) TCGA-E2-A10F-01 6 36334453 36334453 A G ETV7 Missense_Mutation p.F332S 0.24 deleterious(0.04) benign(0.036) TCGA-E2-A10F-01 6 41035015 41035015 C A OARD1 3'UTR 0.19 TCGA-E2-A10F-01 7 73474233 73474250 GGCGTGGCTCCTGGAGTT - ELN In_Frame_Del p.V491_G496del 0.21 TCGA-E2-A10F-01 8 62415781 62415781 G A ASPH 3'UTR 0.31 TCGA-E2-A10F-01 9 36169514 36169514 C A CCIN Missense_Mutation p.F5L 0.33 tolerated(0.19) probably_damaging(0.993) TCGA-E2-A10F-01 X 105152945 105152945 C T NRK Nonsense_Mutation p.R439* 0.20 TCGA-E2-A10F-01 X 153599398 153599398 G A FLNA Silent p.S72S 0.24 TCGA-E2-A14N-01 10 127371574 127371574 G A TEX36 5'UTR 0.09 TCGA-E2-A14N-01 10 13043199 13043199 G A CCDC3 Silent p.L124L 0.40 TCGA-E2-A14N-01 10 25313398 25313398 C T THNSL1 Nonsense_Mutation p.Q416* 0.18 TCGA-E2-A14N-01 10 27052815 27052815 C A ABI1 Missense_Mutation p.V299L 0.19 tolerated(0.74) benign(0) TCGA-E2-A14N-01 10 27700858 27700858 C A PTCHD3 Missense_Mutation p.V364L 0.18 tolerated(0.05) benign(0.164) TCGA-E2-A14N-01 10 73485258 73485258 C T CDH23 Missense_Mutation p.P1192L 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-E2-A14N-01 11 107965573 107965573 C T CUL5 Silent p.G534G 0.28 TCGA-E2-A14N-01 11 118221328 118221328 C A CD3G Silent p.I123I 0.09 TCGA-E2-A14N-01 11 18159472 18159472 G T MRGPRX3 Missense_Mutation p.R241S 0.19 deleterious(0.04) benign(0.026) TCGA-E2-A14N-01 11 62400200 62400200 C G GANAB Missense_Mutation p.R300P 0.23 deleterious(0) probably_damaging(1) TCGA-E2-A14N-01 11 73418530 73418530 T G RAB6A Missense_Mutation p.K144Q 0.03 deleterious(0.03) benign(0.062) TCGA-E2-A14N-01 11 73418531 73418531 C A RAB6A Missense_Mutation p.R143S 0.03 tolerated(0.35) benign(0.003) TCGA-E2-A14N-01 11 9597567 9597567 C G WEE1 Missense_Mutation p.P237A 0.03 deleterious(0) probably_damaging(0.997) TCGA-E2-A14N-01 12 120995476 120995476 C T RNF10 Missense_Mutation p.H320Y 0.27 tolerated(0.51) benign(0.001) TCGA-E2-A14N-01 12 21457475 21457475 C T SLCO1A2 Missense_Mutation p.V159M 0.04 deleterious(0.02) benign(0.038) TCGA-E2-A14N-01 13 113488902 113488902 G C ATP11A Splice_Site p.X520_splice 0.21 TCGA-E2-A14N-01 13 113771885 113771885 C T F7 Silent p.N260N 0.11 TCGA-E2-A14N-01 13 51854669 51854669 G A FAM124A Silent p.P342P 0.20 TCGA-E2-A14N-01 14 101350779 101350779 C T RTL1 Missense_Mutation p.G116E 0.11 tolerated_low_confidence(1) benign(0) TCGA-E2-A14N-01 14 22891512 22891512 A G TRDV2 5'UTR 0.19 TCGA-E2-A14N-01 14 57749659 57749659 A T AP5M1 Missense_Mutation p.I366F 0.07 deleterious(0) possibly_damaging(0.891) TCGA-E2-A14N-01 14 75329577 75329577 T A PROX2 Intron 0.12 TCGA-E2-A14N-01 15 72338876 72338876 C T MYO9A Missense_Mutation p.R10H 0.22 deleterious(0) probably_damaging(0.993) TCGA-E2-A14N-01 16 28511052 28511052 C G IL27 Missense_Mutation p.V218L 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-E2-A14N-01 16 70305721 70305721 G C AARS Missense_Mutation p.L212V 0.08 tolerated(0.16) probably_damaging(0.999) TCGA-E2-A14N-01 17 25949181 25949181 C G KSR1 3'UTR 0.14 TCGA-E2-A14N-01 17 38936652 38936652 C T KRT27 Missense_Mutation p.R195Q 0.19 deleterious(0.02) probably_damaging(0.942) TCGA-E2-A14N-01 17 56384995 56384995 A C BZRAP1 Missense_Mutation p.F1654V 0.16 deleterious(0) probably_damaging(0.999) TCGA-E2-A14N-01 17 73956312 73956312 C G ACOX1 Missense_Mutation p.Q138H 0.20 deleterious(0) probably_damaging(1) TCGA-E2-A14N-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.26 TCGA-E2-A14N-01 18 28598177 28598177 G A DSC3 Nonsense_Mutation p.R375* 0.05 TCGA-E2-A14N-01 19 12256170 12256170 G C ZNF625 Missense_Mutation p.T354S 0.19 tolerated(0.11) benign(0.017) TCGA-E2-A14N-01 19 1877565 1877565 C A ABHD17A Missense_Mutation p.G268C 0.21 deleterious(0) probably_damaging(1) TCGA-E2-A14N-01 19 3530803 3530803 G A FZR1 Missense_Mutation p.C223Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-E2-A14N-01 19 36303679 36303679 G C PRODH2 Missense_Mutation p.S86C 0.17 deleterious_low_confidence(0.05) benign(0.01) TCGA-E2-A14N-01 19 40373944 40373944 C T FCGBP Splice_Site p.X4045_splice 0.04 TCGA-E2-A14N-01 19 40411955 40411955 C T FCGBP Missense_Mutation p.E1225K 0.11 benign(0.401) TCGA-E2-A14N-01 19 41173774 41173774 C A NUMBL Missense_Mutation p.V477L 0.27 tolerated_low_confidence(0.12) possibly_damaging(0.785) TCGA-E2-A14N-01 19 49994466 49994466 G A RPL13A Intron 0.14 TCGA-E2-A14N-01 19 5917932 5917932 C T RANBP3 Silent p.L511L 0.21 TCGA-E2-A14N-01 1 117619399 117619399 G C TTF2 Missense_Mutation p.K509N 0.09 tolerated(0.36) benign(0.002) TCGA-E2-A14N-01 1 149915605 149915605 C A OTUD7B 3'UTR 0.13 TCGA-E2-A14N-01 1 150722597 150722597 C A CTSS Missense_Mutation p.K226N 0.18 deleterious(0.02) possibly_damaging(0.459) TCGA-E2-A14N-01 1 151209081 151209081 C T PIP5K1A Silent p.I329I 0.18 TCGA-E2-A14N-01 1 152975898 152975898 T G SPRR3 Silent p.P134P 0.10 TCGA-E2-A14N-01 1 155870229 155870229 A C RIT1 Missense_Mutation p.W221G 0.08 tolerated(0.06) benign(0.035) TCGA-E2-A14N-01 1 203734468 203734468 C T LAX1 5'UTR 0.23 TCGA-E2-A14N-01 1 207857233 207857233 T C CR1L Missense_Mutation p.S132P 0.09 tolerated(0.16) benign(0.103) TCGA-E2-A14N-01 1 227381512 227381512 C T CDC42BPA Missense_Mutation p.V192I 0.04 tolerated(1) benign(0.003) TCGA-E2-A14N-01 1 34554791 34554791 T C CSMD2 Missense_Mutation p.Q24R 0.12 tolerated(0.2) possibly_damaging(0.829) TCGA-E2-A14N-01 1 42875811 42875811 T C RIMKLA Missense_Mutation p.M213T 0.10 deleterious(0.04) probably_damaging(0.952) TCGA-E2-A14N-01 1 44063471 44063471 G C PTPRF Silent p.T622T 0.16 TCGA-E2-A14N-01 1 46100010 46100010 A G GPBP1L1 Intron 0.16 TCGA-E2-A14N-01 1 47395721 47395721 G C CYP4A11 3'UTR 0.16 TCGA-E2-A14N-01 1 48699331 48699331 G A SLC5A9 Silent p.E371E 0.18 TCGA-E2-A14N-01 1 906108 906108 G T PLEKHN1 Missense_Mutation p.G152W 0.28 deleterious(0) probably_damaging(0.942) TCGA-E2-A14N-01 20 31961928 31961928 G A CDK5RAP1 Missense_Mutation p.R400W 0.14 deleterious(0) probably_damaging(0.944) TCGA-E2-A14N-01 20 32677564 32677564 C T EIF2S2 Missense_Mutation p.R325Q 0.04 deleterious(0.02) benign(0.004) TCGA-E2-A14N-01 20 3527932 3527932 T A ATRN Missense_Mutation p.F247I 0.26 tolerated(1) benign(0.002) TCGA-E2-A14N-01 20 62899355 62899355 T C PCMTD2 Missense_Mutation p.V233A 0.22 tolerated(0.09) benign(0.009) TCGA-E2-A14N-01 21 38126598 38126598 G A HLCS Silent p.D710D 0.10 TCGA-E2-A14N-01 21 40969512 40969512 A T C21orf88 3'UTR 0.07 TCGA-E2-A14N-01 21 45959143 45959143 G A KRTAP10-1 3'UTR 0.10 TCGA-E2-A14N-01 22 22123582 22123582 C T MAPK1 Missense_Mutation p.D332N 0.04 deleterious(0.03) benign(0) TCGA-E2-A14N-01 22 26423470 26423470 A T MYO18B Silent p.S2510S 0.31 TCGA-E2-A14N-01 22 37967898 37967898 G C LGALS2 Nonsense_Mutation p.S16* 0.09 TCGA-E2-A14N-01 2 120704093 120704093 G A PTPN4 Splice_Site p.X534_splice 0.04 TCGA-E2-A14N-01 2 145147082 145147082 G A ZEB2 Missense_Mutation p.S1194L 0.09 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-E2-A14N-01 2 187626606 187626606 A T FAM171B Missense_Mutation p.R513W 0.29 tolerated(0.1) probably_damaging(0.975) TCGA-E2-A14N-01 2 27849854 27849854 G A CCDC121 Silent p.T433T 0.09 TCGA-E2-A14N-01 2 61710129 61710129 A G XPO1 Silent p.H925H 0.18 TCGA-E2-A14N-01 2 65298808 65298808 C T CEP68 Missense_Mutation p.P193L 0.12 tolerated(1) benign(0.001) TCGA-E2-A14N-01 2 85097456 85097456 A C TRABD2A Missense_Mutation p.L188V 0.11 deleterious(0) probably_damaging(0.999) TCGA-E2-A14N-01 3 11383698 11383698 A G ATG7 Missense_Mutation p.K357R 0.40 tolerated(0.83) benign(0.074) TCGA-E2-A14N-01 3 12225045 12225045 T A SYN2 RNA 0.26 TCGA-E2-A14N-01 3 130145082 130145082 C G COL6A5 Missense_Mutation p.P1730A 0.05 tolerated(0.53) benign(0.036) TCGA-E2-A14N-01 3 136573332 136573332 A C SLC35G2 Silent p.P10P 0.09 TCGA-E2-A14N-01 3 151055527 151055527 G C P2RY12 3'UTR 0.09 TCGA-E2-A14N-01 3 182987414 182987414 C G B3GNT5 5'UTR 0.10 TCGA-E2-A14N-01 3 196051341 196051341 G C TM4SF19 Intron 0.04 TCGA-E2-A14N-01 3 49147764 49147774 TGTCACTGTGC - USP19 Frame_Shift_Del p.S1292Nfs*34 0.11 TCGA-E2-A14N-01 3 54912937 54912948 GAGGTGTAAGTT - CACNA2D3 Intron 0.35 TCGA-E2-A14N-01 4 147724636 147724636 C G TTC29 Missense_Mutation p.G435R 0.11 tolerated(0.08) benign(0.009) TCGA-E2-A14N-01 4 70455314 70455314 G T UGT2A1 Missense_Mutation p.P620T 0.17 deleterious(0) probably_damaging(0.992) TCGA-E2-A14N-01 4 84234382 84234382 A T HPSE Missense_Mutation p.F186L 0.20 tolerated(0.07) possibly_damaging(0.866) TCGA-E2-A14N-01 5 129001245 129001245 G C ADAMTS19 Missense_Mutation p.E821Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-E2-A14N-01 5 137771360 137771360 G A KDM3B Missense_Mutation p.A1753T 0.22 deleterious(0.03) benign(0.418) TCGA-E2-A14N-01 5 150566946 150566946 C A CCDC69 Splice_Site p.X131_splice 0.25 TCGA-E2-A14N-01 5 33954533 33954533 A T SLC45A2 Missense_Mutation p.I322N 0.07 deleterious(0) probably_damaging(0.936) TCGA-E2-A14N-01 5 67591140 67591145 ACCAAT - PIK3R1 In_Frame_Del p.Q579_Y580del 0.10 TCGA-E2-A14N-01 6 10935310 10935310 C A SYCP2L Nonsense_Mutation p.S568* 0.26 TCGA-E2-A14N-01 6 151293154 151293154 T C MTHFD1L Silent p.D695D 0.11 TCGA-E2-A14N-01 6 159401878 159401878 G C RSPH3 Missense_Mutation p.L405V 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-E2-A14N-01 6 169649066 169649066 C T THBS2 Missense_Mutation p.G19S 0.16 tolerated_low_confidence(0.39) benign(0.014) TCGA-E2-A14N-01 6 656100 656100 C A HUS1B 3'UTR 0.37 TCGA-E2-A14N-01 6 7301667 7301667 A G SSR1 Missense_Mutation p.L140P 0.14 deleterious(0) probably_damaging(0.979) TCGA-E2-A14N-01 7 141705436 141705436 A G MGAM Missense_Mutation p.K36E 0.16 tolerated(0.37) benign(0.001) TCGA-E2-A14N-01 7 154862779 154862779 G T HTR5A-AS1 Missense_Mutation p.Q79K 0.13 deleterious_low_confidence(0) benign(0.092) TCGA-E2-A14N-01 7 157367047 157367047 T G PTPRN2 Intron 0.06 TCGA-E2-A14N-01 7 4845229 4845229 C G RADIL Missense_Mutation p.G753A 0.33 tolerated(0.18) benign(0.045) TCGA-E2-A14N-01 7 91632139 91632139 C G AKAP9 Missense_Mutation p.H970D 0.14 possibly_damaging(0.809) TCGA-E2-A14N-01 7 92733023 92733023 G T SAMD9 Silent p.L796L 0.15 TCGA-E2-A14N-01 8 10465304 10465304 C G RP1L1 Missense_Mutation p.E2102Q 0.05 unknown(0) TCGA-E2-A14N-01 8 32406158 32406158 A C NRG1 5'UTR 0.16 TCGA-E2-A14N-01 9 135765120 135765120 T C C9orf9 Intron 0.19 TCGA-E2-A14N-01 9 137309062 137309062 C T RXRA Silent p.T223T 0.30 TCGA-E2-A14N-01 9 17795652 17795652 G A SH3GL2 Missense_Mutation p.D324N 0.13 deleterious(0) possibly_damaging(0.908) TCGA-E2-A14N-01 9 20620668 20620668 G A MLLT3 Missense_Mutation p.P60S 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-E2-A14N-01 9 98221930 98221930 C G PTCH1 Missense_Mutation p.E947Q 0.34 tolerated(0.16) benign(0.349) TCGA-E2-A14N-01 X 107170052 107170052 C G MID2 Missense_Mutation p.R653G 0.20 deleterious(0) probably_damaging(0.983) TCGA-E2-A14N-01 X 1471022 1471022 C G IL3RA Missense_Mutation p.L110V 0.03 tolerated(0.07) possibly_damaging(0.905) TCGA-E2-A14N-01 X 2774660 2774660 C G GYG2 Missense_Mutation p.F234L 0.16 deleterious(0) possibly_damaging(0.65) TCGA-E2-A14O-01 10 102732993 102732993 T G SEMA4G Missense_Mutation p.S78A 0.48 tolerated(1) probably_damaging(0.994) TCGA-E2-A14O-01 10 127530353 127530353 T G DHX32 Missense_Mutation p.D501A 0.41 deleterious(0) probably_damaging(0.973) TCGA-E2-A14O-01 10 21959565 21959565 G A MLLT10 Missense_Mutation p.R328K 0.49 tolerated(0.42) probably_damaging(0.986) TCGA-E2-A14O-01 11 66811295 66811295 G T SYT12 Missense_Mutation p.G270C 0.13 tolerated(0.07) benign(0.396) TCGA-E2-A14O-01 11 67269453 67269453 C T PITPNM1 Missense_Mutation p.D174N 0.13 deleterious(0) benign(0.379) TCGA-E2-A14O-01 12 56862936 56862936 A C SPRYD4 Missense_Mutation p.N67H 0.35 deleterious(0.02) possibly_damaging(0.8) TCGA-E2-A14O-01 12 65857110 65857110 G A MSRB3 3'UTR 0.47 TCGA-E2-A14O-01 14 103802230 103802230 C G EIF5 Missense_Mutation p.D11E 0.52 deleterious(0) possibly_damaging(0.646) TCGA-E2-A14O-01 14 105716214 105716214 C T BTBD6 Silent p.S221S 0.42 TCGA-E2-A14O-01 15 32929250 32929250 C A ARHGAP11A Missense_Mutation p.A759D 0.58 tolerated(0.1) benign(0.012) TCGA-E2-A14O-01 16 2027601 2027601 G A TBL3 Missense_Mutation p.G610E 0.53 deleterious(0) possibly_damaging(0.649) TCGA-E2-A14O-01 16 31474228 31474228 C T ARMC5 Missense_Mutation p.R454W 0.57 deleterious(0.01) possibly_damaging(0.899) TCGA-E2-A14O-01 16 4862120 4862122 AGC - GLYR1 In_Frame_Del p.C416del 0.61 TCGA-E2-A14O-01 17 18149307 18149307 C T FLII Missense_Mutation p.E1113K 0.14 deleterious(0.02) possibly_damaging(0.666) TCGA-E2-A14O-01 17 48267939 48267939 C T COL1A1 Missense_Mutation p.G788S 0.45 unknown(0) TCGA-E2-A14O-01 17 58740624 58740624 A - PPM1D Frame_Shift_Del p.N512Ifs*2 0.24 TCGA-E2-A14O-01 17 61498828 61498828 A G TANC2 Missense_Mutation p.T1829A 0.41 tolerated_low_confidence(0.09) benign(0.016) TCGA-E2-A14O-01 19 1418354 1418354 G T DAZAP1 Silent p.T74T 0.20 TCGA-E2-A14O-01 19 14866468 14866468 G A EMR2 Missense_Mutation p.R472C 0.40 deleterious(0.03) benign(0.006) TCGA-E2-A14O-01 19 15565621 15565621 C T RASAL3 Missense_Mutation p.R602Q 0.36 deleterious(0.02) possibly_damaging(0.735) TCGA-E2-A14O-01 19 6750615 6750615 G T TRIP10 Missense_Mutation p.G487V 0.31 deleterious(0) probably_damaging(0.995) TCGA-E2-A14O-01 1 248616513 248616513 C T OR2T2 Missense_Mutation p.R139C 0.17 tolerated(0.1) benign(0.003) TCGA-E2-A14O-01 1 51584393 51584393 C T C1orf185 Missense_Mutation p.P60S 0.61 tolerated(0.64) benign(0.011) TCGA-E2-A14O-01 22 23165366 23165366 G T IGLV2-8 Intron 0.64 TCGA-E2-A14O-01 22 25315810 25315810 G A SGSM1 Missense_Mutation p.V1070I 0.66 tolerated(0.05) possibly_damaging(0.591) TCGA-E2-A14O-01 3 129289712 129289712 C T PLXND1 Missense_Mutation p.D1223N 0.41 tolerated(0.4) benign(0.004) TCGA-E2-A14O-01 3 42659115 42659115 A G NKTR Missense_Mutation p.N38D 0.37 deleterious_low_confidence(0) unknown(0) TCGA-E2-A14O-01 3 52557526 52557526 G A STAB1 Silent p.P2408P 0.05 TCGA-E2-A14O-01 6 150001395 150001395 G A LATS1 Nonsense_Mutation p.R737* 0.72 TCGA-E2-A14O-01 7 131908302 131908302 C T PLXNA4 Missense_Mutation p.R694Q 0.27 deleterious(0.01) benign(0.215) TCGA-E2-A14O-01 7 4008969 4008969 G A SDK1 Missense_Mutation p.V543I 0.55 tolerated(0.15) benign(0.13) TCGA-E2-A14O-01 7 92098206 92098206 A T ERVW-1 Missense_Mutation p.I497N 0.40 deleterious_low_confidence(0) benign(0.065) TCGA-E2-A14O-01 8 27098633 27098633 G A STMN4 Missense_Mutation p.R113W 0.21 deleterious(0) probably_damaging(0.993) TCGA-E2-A14O-01 9 119188282 119188282 C T ASTN2 Missense_Mutation p.V1239M 0.75 tolerated(0.09) unknown(0) TCGA-E2-A14O-01 X 117162442 117162442 C A KLHL13 5'UTR 0.04 TCGA-E2-A14O-01 X 151336621 151336621 G A GABRA3 3'UTR 0.38 TCGA-E2-A14O-01 X 153284685 153284685 C A IRAK1 Silent p.R133R 0.25 TCGA-E2-A14O-01 X 68382547 68382547 G A PJA1 Nonsense_Mutation p.R179* 0.25 TCGA-E2-A14P-01 10 11911456 11911456 C T PROSER2 Intron 0.37 TCGA-E2-A14P-01 10 133967268 133967268 C T JAKMIP3 Silent p.L691L 0.21 TCGA-E2-A14P-01 11 18232136 18232136 G A RP11-113D6.10 3'UTR 0.23 TCGA-E2-A14P-01 11 56127893 56127893 C A OR8J1 Silent p.T57T 0.12 TCGA-E2-A14P-01 11 56185359 56185359 G T OR5R1 Missense_Mutation p.S117Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-E2-A14P-01 11 68748273 68748273 G A MRGPRD Silent p.F61F 0.35 TCGA-E2-A14P-01 12 22025600 22025600 G A ABCC9 Silent p.L719L 0.20 TCGA-E2-A14P-01 12 45444337 45444337 C T DBX2 Missense_Mutation p.R125Q 0.40 tolerated(0.23) benign(0.002) TCGA-E2-A14P-01 12 52470890 52470890 G T C12orf44 Missense_Mutation p.K191N 0.20 deleterious(0) benign(0.411) TCGA-E2-A14P-01 12 53565586 53565586 C A CSAD Intron 0.10 TCGA-E2-A14P-01 12 56506702 56506702 C G PA2G4 3'UTR 0.25 TCGA-E2-A14P-01 12 57919306 57919306 C T MBD6 Silent p.F185F 0.41 TCGA-E2-A14P-01 12 5848498 5848498 G T ANO2 Silent p.G469G 0.21 TCGA-E2-A14P-01 13 52854827 52854827 G A RP11-248G5.8 RNA 0.20 TCGA-E2-A14P-01 14 20344474 20344474 G T OR4K2 Silent p.G16G 0.23 TCGA-E2-A14P-01 14 23397820 23397820 C G PRMT5 Missense_Mutation p.D39H 0.27 deleterious(0.02) possibly_damaging(0.449) TCGA-E2-A14P-01 14 55251057 55251057 G A SAMD4A Intron 0.22 TCGA-E2-A14P-01 14 58910712 58910715 AATT - KIAA0586 Frame_Shift_Del p.E262Dfs*38 0.21 TCGA-E2-A14P-01 14 75248571 75248571 T C YLPM1 Missense_Mutation p.S609P 0.37 unknown(0) TCGA-E2-A14P-01 15 39883456 39883456 G A THBS1 Missense_Mutation p.R773H 0.05 deleterious(0.05) possibly_damaging(0.842) TCGA-E2-A14P-01 15 44119242 44119242 G T WDR76 Silent p.S4S 0.18 TCGA-E2-A14P-01 15 79067106 79067106 C T ADAMTS7 Missense_Mutation p.G579D 0.11 deleterious(0) probably_damaging(1) TCGA-E2-A14P-01 15 90276247 90276248 - G WDR93 Frame_Shift_Ins p.V449Gfs*30 0.21 TCGA-E2-A14P-01 16 31766522 31766522 G A ZNF720 Intron 0.18 TCGA-E2-A14P-01 16 68404767 68404767 G T SMPD3 Missense_Mutation p.L440I 0.13 tolerated(0.43) benign(0.057) TCGA-E2-A14P-01 16 723643 723643 T C RHOT2 3'UTR 0.28 TCGA-E2-A14P-01 16 87636643 87636643 C G JPH3 5'UTR 0.28 TCGA-E2-A14P-01 17 26905084 26905084 G A SPAG5 Missense_Mutation p.R1152W 0.10 deleterious(0) probably_damaging(1) TCGA-E2-A14P-01 17 30658684 30658684 C A C17orf75 3'UTR 0.09 TCGA-E2-A14P-01 17 33520478 33520478 G A SLC35G3 Silent p.C283C 0.34 TCGA-E2-A14P-01 17 59861632 59861640 TGCTATTTT - BRIP1 In_Frame_Del p.Q540_S542del 0.19 TCGA-E2-A14P-01 17 72613390 72613390 G A CD300E Silent p.L85L 0.39 TCGA-E2-A14P-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.52 deleterious(0) probably_damaging(0.997) TCGA-E2-A14P-01 17 78169364 78169364 C T CARD14 Silent p.L503L 0.20 TCGA-E2-A14P-01 18 10696087 10696087 G A PIEZO2 Missense_Mutation p.P2279L 0.18 deleterious(0) possibly_damaging(0.8) TCGA-E2-A14P-01 18 34465536 34465536 G A KIAA1328 Missense_Mutation p.E117K 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-E2-A14P-01 18 44400931 44400931 T C PIAS2 Missense_Mutation p.H538R 0.20 tolerated(0.3) possibly_damaging(0.507) TCGA-E2-A14P-01 18 74091001 74091001 G A ZNF516 Silent p.D1023D 0.33 TCGA-E2-A14P-01 18 8387170 8387170 G A PTPRM Missense_Mutation p.R1382H 0.35 tolerated(0.16) benign(0.014) TCGA-E2-A14P-01 19 10226023 10226023 A G P2RY11 3'UTR 0.27 TCGA-E2-A14P-01 19 39329199 39329199 G T HNRNPL Nonsense_Mutation p.Y465* 0.29 TCGA-E2-A14P-01 19 48533687 48533687 A T CABP5 3'UTR 0.24 TCGA-E2-A14P-01 19 55820015 55820015 C T BRSK1 Missense_Mutation p.R700C 0.16 deleterious(0) probably_damaging(0.998) TCGA-E2-A14P-01 1 151146968 151146968 G A TMOD4 Missense_Mutation p.T60M 0.27 deleterious(0) probably_damaging(1) TCGA-E2-A14P-01 1 155922540 155922540 G A ARHGEF2 Silent p.F621F 0.64 TCGA-E2-A14P-01 1 206649567 206649567 C T IKBKE Silent p.R134R 0.18 TCGA-E2-A14P-01 1 21076220 21076220 A G HP1BP3 Silent p.Y379Y 0.51 TCGA-E2-A14P-01 1 22156504 22156504 C A HSPG2 Missense_Mutation p.G3918W 0.28 probably_damaging(1) TCGA-E2-A14P-01 1 222903003 222903003 A T BROX Missense_Mutation p.K266N 0.56 deleterious(0) probably_damaging(0.993) TCGA-E2-A14P-01 1 241750005 241750005 G C KMO Missense_Mutation p.D328H 0.17 tolerated(0.08) possibly_damaging(0.6) TCGA-E2-A14P-01 1 26608929 26608929 G A UBXN11 Missense_Mutation p.P475L 0.14 tolerated(0.44) probably_damaging(0.931) TCGA-E2-A14P-01 1 47728698 47728698 C T STIL Silent p.Q902Q 0.14 TCGA-E2-A14P-01 1 48696327 48696327 A G SLC5A9 Missense_Mutation p.Y212C 0.30 deleterious(0.01) benign(0.25) TCGA-E2-A14P-01 1 91859834 91859834 G C HFM1 Missense_Mutation p.L104V 0.24 deleterious_low_confidence(0.03) benign(0.12) TCGA-E2-A14P-01 20 3184039 3184039 C T DDRGK1 Missense_Mutation p.E39K 0.37 tolerated(0.09) benign(0.016) TCGA-E2-A14P-01 20 31946704 31946704 G A CDK5RAP1 3'UTR 0.31 TCGA-E2-A14P-01 20 3765588 3765588 C T CENPB Missense_Mutation p.E515K 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.458) TCGA-E2-A14P-01 20 42194928 42194928 C T SGK2 5'UTR 0.15 TCGA-E2-A14P-01 20 42788650 42788650 G A JPH2 Silent p.D259D 0.18 TCGA-E2-A14P-01 20 43538932 43538932 C T PABPC1L Missense_Mutation p.R50C 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A14P-01 20 59829897 59829897 C G CDH4 Missense_Mutation p.L25V 0.27 tolerated_low_confidence(0.75) benign(0.002) TCGA-E2-A14P-01 22 37771355 37771355 A G ELFN2 Missense_Mutation p.S74P 0.25 deleterious(0) probably_damaging(0.987) TCGA-E2-A14P-01 22 50646949 50646949 C T SELO Intron 0.22 TCGA-E2-A14P-01 2 128046289 128046289 C T ERCC3 Missense_Mutation p.R325Q 0.14 deleterious(0.03) possibly_damaging(0.862) TCGA-E2-A14P-01 2 128260411 128260411 C T IWS1 Missense_Mutation p.E483K 0.18 deleterious(0) benign(0.242) TCGA-E2-A14P-01 2 130868152 130868155 GTCT - POTEF Frame_Shift_Del p.Q339Rfs*13 0.17 TCGA-E2-A14P-01 2 170003332 170003332 C T LRP2 Missense_Mutation p.R4243Q 0.17 benign(0.133) TCGA-E2-A14P-01 2 179456809 179456809 A C TTN Missense_Mutation p.L19941R 0.17 TCGA-E2-A14P-01 2 179476280 179476280 A G TTN Silent p.C16892C 0.16 TCGA-E2-A14P-01 2 18112646 18112646 G A KCNS3 Missense_Mutation p.R124H 0.20 deleterious(0.01) benign(0.127) TCGA-E2-A14P-01 2 207175720 207175720 C T ZDBF2 Silent p.V2156V 0.16 TCGA-E2-A14P-01 2 225266233 225266233 C T FAM124B Missense_Mutation p.V85I 0.20 tolerated(0.14) benign(0.016) TCGA-E2-A14P-01 2 232070924 232070924 G T ARMC9 5'UTR 0.16 TCGA-E2-A14P-01 2 232392911 232392911 G A NMUR1 Missense_Mutation p.S274F 0.35 deleterious(0.03) benign(0.181) TCGA-E2-A14P-01 2 42990664 42990664 C T OXER1 Missense_Mutation p.G219D 0.32 tolerated(0.08) benign(0.417) TCGA-E2-A14P-01 2 60688018 60688018 C T BCL11A Missense_Mutation p.G677R 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-E2-A14P-01 2 86831287 86831287 G A RNF103 Silent p.A579A 0.19 TCGA-E2-A14P-01 3 127983621 127983621 C A EEFSEC Silent p.L261L 0.61 TCGA-E2-A14P-01 3 129200411 129200411 C G IFT122 Silent p.V560V 0.56 TCGA-E2-A14P-01 3 183669317 183669317 G C ABCC5 Missense_Mutation p.F952L 0.17 deleterious(0.01) benign(0.189) TCGA-E2-A14P-01 3 183855975 183855975 G A EIF2B5 Missense_Mutation p.D236N 0.15 tolerated(0.16) benign(0.004) TCGA-E2-A14P-01 4 109087517 109087517 C A LEF1 Intron 0.21 TCGA-E2-A14P-01 4 141578724 141578724 A G TBC1D9 Silent p.L722L 0.19 TCGA-E2-A14P-01 4 170912621 170912621 C T MFAP3L Missense_Mutation p.D380N 0.21 deleterious_low_confidence(0.04) benign(0.042) TCGA-E2-A14P-01 5 140242934 140242934 G A AC005609.1 Silent p.V14V 0.15 TCGA-E2-A14P-01 5 140720243 140720243 A G PCDHGA2 Missense_Mutation p.T569A 0.43 deleterious_low_confidence(0) benign(0.039) TCGA-E2-A14P-01 5 179267940 179267940 C T C5orf45 Missense_Mutation p.V157I 0.17 tolerated(0.33) benign(0.009) TCGA-E2-A14P-01 6 150715289 150715289 C T IYD Silent p.F195F 0.23 TCGA-E2-A14P-01 6 153077328 153077328 A T VIP Missense_Mutation p.D132V 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A14P-01 6 26377421 26377421 C T BTN3A2 3'UTR 0.12 TCGA-E2-A14P-01 6 29454744 29454744 G A MAS1L Silent p.I312I 0.23 TCGA-E2-A14P-01 6 29455332 29455332 G A MAS1L Silent p.V116V 0.24 TCGA-E2-A14P-01 6 31541102 31541102 G A LTA Missense_Mutation p.D84N 0.22 tolerated(0.54) probably_damaging(1) TCGA-E2-A14P-01 6 348862 348862 C T DUSP22 Intron 0.15 TCGA-E2-A14P-01 7 100244881 100244881 G A ACTL6B Silent p.S262S 0.18 TCGA-E2-A14P-01 7 122303308 122303308 G A CADPS2 Missense_Mutation p.L257F 0.31 deleterious(0) possibly_damaging(0.703) TCGA-E2-A14P-01 7 131982906 131982906 G A PLXNA4 Missense_Mutation p.R483W 0.36 deleterious(0) probably_damaging(1) TCGA-E2-A14P-01 7 33407456 33407456 C T BBS9 Missense_Mutation p.L591F 0.18 deleterious(0) possibly_damaging(0.749) TCGA-E2-A14P-01 7 34724283 34724283 G T NPSR1 Missense_Mutation p.Q89H 0.18 tolerated(0.31) benign(0.123) TCGA-E2-A14P-01 7 42064883 42064883 G A GLI3 Missense_Mutation p.P446S 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-E2-A14P-01 7 62752198 62752198 G A ZNF733P RNA 0.22 TCGA-E2-A14P-01 7 65157715 65157715 C A INTS4L2 RNA 0.19 TCGA-E2-A14P-01 7 6621256 6621256 C G ZDHHC4 Missense_Mutation p.P46A 0.58 deleterious(0.01) possibly_damaging(0.871) TCGA-E2-A14P-01 7 99580920 99580920 C T AZGP1P1 RNA 0.53 TCGA-E2-A14P-01 7 99695338 99695338 G T MCM7 Nonsense_Mutation p.S339* 0.22 TCGA-E2-A14P-01 8 103284901 103284901 C T UBR5 Missense_Mutation p.V2277I 0.22 deleterious(0) possibly_damaging(0.55) TCGA-E2-A14P-01 8 118811889 118811889 G A EXT1 3'UTR 0.15 TCGA-E2-A14P-01 8 29989859 29989859 G C MBOAT4 Nonsense_Mutation p.S303* 0.19 TCGA-E2-A14P-01 8 42711536 42711536 C T RNF170 Silent p.L181L 0.29 TCGA-E2-A14P-01 9 131133649 131133649 G A URM1 5'UTR 0.19 TCGA-E2-A14P-01 9 136314932 136314932 G A ADAMTS13 Missense_Mutation p.V964M 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-E2-A14P-01 9 140729293 140729293 A G EHMT1 Missense_Mutation p.K1262R 0.47 deleterious(0.03) benign(0.247) TCGA-E2-A14P-01 9 34723403 34723403 A G FAM205A Silent p.R1278R 0.11 TCGA-E2-A14P-01 9 88920155 88920155 C T ZCCHC6 Splice_Site p.X1280_splice 0.35 TCGA-E2-A14P-01 X 100668219 100668219 C A HNRNPH2 Missense_Mutation p.Q415K 0.25 tolerated(0.47) benign(0.016) TCGA-E2-A14P-01 X 37028635 37028635 C T FAM47C Missense_Mutation p.P718S 0.17 tolerated(0.11) benign(0) TCGA-E2-A14Q-01 10 134036380 134036380 C T STK32C Silent p.P368P 0.26 TCGA-E2-A14Q-01 10 48413574 48413574 G T GDF2 3'UTR 0.23 TCGA-E2-A14Q-01 11 74209012 74209012 G A LIPT2 5'Flank 0.31 TCGA-E2-A14Q-01 12 122825972 122825972 G A CLIP1 Silent p.T593T 0.30 TCGA-E2-A14Q-01 12 81101884 81101884 C T MYF6 Missense_Mutation p.P129L 0.23 deleterious(0) probably_damaging(0.999) TCGA-E2-A14Q-01 14 53173897 53173897 T C PSMC6 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.092) TCGA-E2-A14Q-01 14 77757676 77757676 C T POMT2 Silent p.K388K 0.25 TCGA-E2-A14Q-01 14 89094085 89094085 C - EML5 Frame_Shift_Del p.G1479Efs*19 0.22 TCGA-E2-A14Q-01 15 20644030 20644030 C T HERC2P3 RNA 0.26 TCGA-E2-A14Q-01 17 2598235 2598235 G A CLUH Missense_Mutation p.T884I 0.32 deleterious(0.01) benign(0.304) TCGA-E2-A14Q-01 17 63221255 63221255 C T RGS9 Missense_Mutation p.R515W 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.719) TCGA-E2-A14Q-01 17 66246315 66246315 C A AMZ2 Intron 0.21 TCGA-E2-A14Q-01 19 1397207 1397207 A G GAMT 3'Flank 0.39 TCGA-E2-A14Q-01 19 15538257 15538257 C T WIZ Missense_Mutation p.R206H 0.39 deleterious(0) probably_damaging(1) TCGA-E2-A14Q-01 19 38973696 38973696 C T RYR1 Silent p.A1550A 0.28 TCGA-E2-A14Q-01 19 39735556 39735556 C T IFNL3 Missense_Mutation p.V18M 0.19 tolerated(0.16) benign(0.212) TCGA-E2-A14Q-01 19 57764438 57764438 C T ZNF805 Intron 0.12 TCGA-E2-A14Q-01 1 160147410 160147410 G C ATP1A4 Missense_Mutation p.D898H 0.20 deleterious(0.01) possibly_damaging(0.682) TCGA-E2-A14Q-01 1 173840165 173840165 G T ZBTB37 Missense_Mutation p.A268S 0.18 tolerated(0.28) benign(0.046) TCGA-E2-A14Q-01 1 196918689 196918689 T C CFHR2 Missense_Mutation p.C55R 0.38 deleterious(0) probably_damaging(0.999) TCGA-E2-A14Q-01 1 237881772 237881772 A G RYR2 Missense_Mutation p.E3502G 0.15 benign(0.269) TCGA-E2-A14Q-01 1 33402317 33402317 T G RNF19B 3'UTR 0.20 TCGA-E2-A14Q-01 20 39832443 39832443 G A ZHX3 Missense_Mutation p.R372W 0.25 deleterious(0) probably_damaging(1) TCGA-E2-A14Q-01 20 47989458 47989458 T G KCNB1 3'UTR 0.60 TCGA-E2-A14Q-01 22 24085966 24085966 G T ZNF70 3'UTR 0.09 TCGA-E2-A14Q-01 2 102818091 102818091 G A IL1RL2 Missense_Mutation p.D189N 0.25 deleterious(0.03) possibly_damaging(0.741) TCGA-E2-A14Q-01 2 141598583 141598583 G A LRP1B Missense_Mutation p.T1673M 0.29 possibly_damaging(0.791) TCGA-E2-A14Q-01 2 1507748 1507748 C A TPO Missense_Mutation p.H805Q 0.14 tolerated(0.35) benign(0.004) TCGA-E2-A14Q-01 3 49167413 49167413 G A LAMB2 Missense_Mutation p.R422C 0.31 deleterious(0.03) possibly_damaging(0.717) TCGA-E2-A14Q-01 4 13370042 13370042 T C RAB28 3'UTR 0.30 TCGA-E2-A14Q-01 5 140605357 140605357 G C PCDHB14 Silent p.G760G 0.22 TCGA-E2-A14Q-01 5 140731438 140731438 G A PCDHGB1 Silent p.A537A 0.26 TCGA-E2-A14Q-01 5 67591130 67591150 AAGACGAGAGACCAATACTTG - PIK3R1 In_Frame_Del p.K575_L581del 0.24 TCGA-E2-A14Q-01 6 33371608 33371608 G T KIFC1 Missense_Mutation p.C153F 0.21 tolerated(0.45) benign(0) TCGA-E2-A14Q-01 6 41773690 41773690 G A USP49 Silent p.L344L 0.15 TCGA-E2-A14Q-01 7 138264195 138264195 G A TRIM24 Missense_Mutation p.G835R 0.06 deleterious(0) probably_damaging(1) TCGA-E2-A14Q-01 7 5103484 5103484 A G RBAK Missense_Mutation p.I133V 0.29 tolerated(0.44) benign(0) TCGA-E2-A14Q-01 7 6155014 6155014 T G USP42 Missense_Mutation p.L101R 0.21 deleterious(0) probably_damaging(0.999) TCGA-E2-A14Q-01 8 104924348 104924348 G A RIMS2 Missense_Mutation p.R587H 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E2-A14Q-01 8 12044059 12044059 G A FAM86B1 Missense_Mutation p.R148W 0.14 deleterious(0) benign(0.002) TCGA-E2-A14Q-01 8 95392443 95392443 C A RAD54B Missense_Mutation p.G726V 0.26 deleterious(0) probably_damaging(0.999) TCGA-E2-A14Q-01 9 100887118 100887118 C T CORO2A Missense_Mutation p.V506I 0.19 tolerated(0.4) benign(0.179) TCGA-E2-A14Q-01 9 43133379 43133380 TA - ANKRD20A3 Frame_Shift_Del p.I18Rfs*70 0.12 TCGA-E2-A14Q-01 X 47078020 47078021 - C CDK16 5'Flank 0.31 TCGA-E2-A14R-01 10 104128052 104128052 G T GBF1 Missense_Mutation p.R906L 0.34 deleterious(0) probably_damaging(0.992) TCGA-E2-A14R-01 10 115986919 115986919 G C TDRD1 Silent p.V1088V 0.34 TCGA-E2-A14R-01 10 21097581 21097581 C A NEBL Silent p.A873A 0.19 TCGA-E2-A14R-01 10 3178021 3178021 C T PFKP Missense_Mutation p.T739M 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-E2-A14R-01 10 43883017 43883017 C T HNRNPF Missense_Mutation p.D106N 0.21 tolerated(0.11) benign(0.014) TCGA-E2-A14R-01 10 50532560 50532560 G T C10orf71 Missense_Mutation p.G657V 0.19 tolerated(0.13) benign(0.076) TCGA-E2-A14R-01 10 75482195 75482195 C T RP11-574K11.28 RNA 0.58 TCGA-E2-A14R-01 10 86198279 86198279 A T CCSER2 Missense_Mutation p.Y627F 0.21 tolerated(0.27) probably_damaging(0.997) TCGA-E2-A14R-01 11 1101932 1101932 C A MUC2 Missense_Mutation p.H2566N 0.37 unknown(0) TCGA-E2-A14R-01 11 117306496 117306496 C A DSCAML1 Missense_Mutation p.K1640N 0.05 tolerated(0.07) benign(0.062) TCGA-E2-A14R-01 11 12023920 12023920 C T DKK3 Missense_Mutation p.S93N 0.36 tolerated(1) benign(0.003) TCGA-E2-A14R-01 11 1643059 1643059 C A KRTAP5-4 Missense_Mutation p.G89W 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-E2-A14R-01 11 32608625 32608625 G C EIF3M Missense_Mutation p.G37A 0.65 tolerated(0.14) possibly_damaging(0.564) TCGA-E2-A14R-01 11 49190796 49190796 G A FOLH1 Silent p.L441L 0.35 TCGA-E2-A14R-01 11 64503109 64503109 G A RASGRP2 Missense_Mutation p.P401S 0.31 tolerated(0.07) benign(0.061) TCGA-E2-A14R-01 11 64889852 64889852 G C MRPL49 Missense_Mutation p.G12R 0.49 tolerated(0.79) benign(0.001) TCGA-E2-A14R-01 11 66391939 66391939 T C RBM14 Missense_Mutation p.F198L 0.20 deleterious(0.01) benign(0) TCGA-E2-A14R-01 11 67395788 67395814 GCTCACCTCCTCCGAGTTGGGCCTGAG - NUDT8 Splice_Site p.X129_splice 0.35 TCGA-E2-A14R-01 11 74660153 74660153 G C XRRA1 5'UTR 0.19 TCGA-E2-A14R-01 11 9161094 9161094 C G DENND5A 3'UTR 0.54 TCGA-E2-A14R-01 12 101723085 101723085 G T UTP20 Missense_Mutation p.G1092V 0.12 deleterious(0.01) possibly_damaging(0.707) TCGA-E2-A14R-01 12 122396206 122396206 G A WDR66 Missense_Mutation p.A587T 0.74 tolerated(1) benign(0) TCGA-E2-A14R-01 12 125396252 125396252 G A UBC 3'UTR 0.05 TCGA-E2-A14R-01 12 132862937 132862937 G C GALNT9 Missense_Mutation p.D106E 0.31 tolerated(0.88) benign(0.036) TCGA-E2-A14R-01 12 31551140 31551140 C G DENND5B Missense_Mutation p.L1075F 0.30 tolerated(0.78) benign(0.003) TCGA-E2-A14R-01 12 62979200 62979200 C T MON2 Missense_Mutation p.S1609L 0.50 deleterious(0.01) benign(0.06) TCGA-E2-A14R-01 12 93101706 93101706 G A C12orf74 3'UTR 0.66 TCGA-E2-A14R-01 13 53241054 53241054 G C SUGT1 Missense_Mutation p.K241N 0.17 deleterious(0) probably_damaging(0.968) TCGA-E2-A14R-01 13 97928584 97928584 A C MBNL2 Missense_Mutation p.E32A 0.26 tolerated(0.92) benign(0.011) TCGA-E2-A14R-01 14 20344480 20344480 T C OR4K2 Silent p.S18S 0.06 TCGA-E2-A14R-01 14 23511785 23511785 G T PSMB11 Silent p.L117L 0.26 TCGA-E2-A14R-01 14 55309935 55309935 G T GCH1 3'UTR 0.68 TCGA-E2-A14R-01 14 64153112 64153112 G C SGPP1 Missense_Mutation p.S346C 0.71 deleterious(0) possibly_damaging(0.664) TCGA-E2-A14R-01 15 42805156 42805156 C G SNAP23 Missense_Mutation p.L21V 0.72 tolerated(0.05) possibly_damaging(0.668) TCGA-E2-A14R-01 15 43767790 43767790 C T TP53BP1 Missense_Mutation p.R353K 0.79 tolerated(0.7) benign(0.012) TCGA-E2-A14R-01 15 83523466 83523466 G T HOMER2 Missense_Mutation p.A205E 0.59 tolerated(0.06) benign(0.19) TCGA-E2-A14R-01 15 88678619 88678619 C G NTRK3 Missense_Mutation p.R306P 0.27 tolerated(0.23) benign(0.346) TCGA-E2-A14R-01 16 22161158 22161158 T G VWA3A Missense_Mutation p.L1012R 0.38 deleterious(0) probably_damaging(0.992) TCGA-E2-A14R-01 16 28997485 28997485 C A LAT Missense_Mutation p.P101T 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-E2-A14R-01 16 30733960 30733960 G C SRCAP Missense_Mutation p.Q1261H 0.19 unknown(0) TCGA-E2-A14R-01 16 50112797 50112797 A G HEATR3 Silent p.L303L 0.08 TCGA-E2-A14R-01 16 65025783 65025783 G C CDH11 Missense_Mutation p.H233Q 0.26 tolerated(0.94) benign(0.016) TCGA-E2-A14R-01 16 66586528 66586528 C G CKLF 5'UTR 0.32 TCGA-E2-A14R-01 16 71319781 71319781 G C CMTR2 Missense_Mutation p.P15A 0.23 tolerated_low_confidence(1) benign(0.03) TCGA-E2-A14R-01 16 89930240 89930240 G C SPIRE2 Silent p.S583S 0.07 TCGA-E2-A14R-01 17 40460235 40460235 G A STAT5A Missense_Mutation p.R649Q 0.14 deleterious(0.01) benign(0.021) TCGA-E2-A14R-01 17 71426721 71426721 A T SDK2 Missense_Mutation p.D504E 0.53 deleterious(0.01) possibly_damaging(0.648) TCGA-E2-A14R-01 17 73942758 73942758 A C ACOX1 3'UTR 0.05 TCGA-E2-A14R-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.70 deleterious(0) probably_damaging(1) TCGA-E2-A14R-01 17 81006833 81006833 C G B3GNTL1 Intron 0.36 TCGA-E2-A14R-01 18 14543179 14543179 C T POTEC 5'Flank 0.65 TCGA-E2-A14R-01 18 19020262 19020262 C T GREB1L Nonsense_Mutation p.R328* 0.73 TCGA-E2-A14R-01 18 24496887 24496887 C G CHST9 Missense_Mutation p.G223A 0.83 tolerated(0.23) probably_damaging(1) TCGA-E2-A14R-01 18 71816279 71816279 G A TIMM21 Missense_Mutation p.G79D 0.14 tolerated(0.41) benign(0.001) TCGA-E2-A14R-01 19 31769668 31769668 G C TSHZ3 Missense_Mutation p.T344S 0.06 tolerated(1) benign(0.021) TCGA-E2-A14R-01 19 46321248 46321248 A T SYMPK Missense_Mutation p.M1017K 0.27 deleterious(0) probably_damaging(0.993) TCGA-E2-A14R-01 19 51631731 51631731 A T SIGLEC9 Silent p.I389I 0.55 TCGA-E2-A14R-01 19 51728821 51728821 T C CD33 Missense_Mutation p.Y129H 0.25 deleterious(0) probably_damaging(1) TCGA-E2-A14R-01 19 53668116 53668116 T G ZNF665 Missense_Mutation p.K543Q 0.23 deleterious(0.04) benign(0.121) TCGA-E2-A14R-01 19 55329856 55329856 C G KIR3DL1 Missense_Mutation p.H53D 0.78 tolerated(0.2) benign(0.003) TCGA-E2-A14R-01 1 109238924 109238952 TGGGACTGGTTTGAATCCTTCCTTGATGA - PRPF38B Frame_Shift_Del p.W175* 0.39 TCGA-E2-A14R-01 1 112524764 112524764 G A KCND3 Silent p.V195V 0.42 TCGA-E2-A14R-01 1 116280870 116280870 G - CASQ2 Frame_Shift_Del p.F171Sfs*39 0.26 TCGA-E2-A14R-01 1 1328842 1328842 T C CCNL2 Splice_Site p.X199_splice 0.75 TCGA-E2-A14R-01 1 146408106 146408107 - A NBPF12 Frame_Shift_Ins p.E582Rfs*22 0.34 TCGA-E2-A14R-01 1 147230544 147230544 T C GJA5 Missense_Mutation p.N268S 0.06 tolerated(0.69) benign(0.001) TCGA-E2-A14R-01 1 151006389 151006389 T C PRUNE Silent p.S347S 0.59 TCGA-E2-A14R-01 1 152659424 152659424 G T LCE2B Missense_Mutation p.Q35H 0.19 deleterious_low_confidence(0) unknown(0) TCGA-E2-A14R-01 1 156640029 156640029 T C NES Silent p.G1317G 0.12 TCGA-E2-A14R-01 1 160167383 160167383 G A CASQ1 Silent p.P269P 0.52 TCGA-E2-A14R-01 1 169292459 169292459 T G NME7 Missense_Mutation p.E58D 0.26 tolerated(0.29) benign(0.003) TCGA-E2-A14R-01 1 17266458 17266458 G T CROCC Nonsense_Mutation p.E560* 0.36 TCGA-E2-A14R-01 1 177917055 177917055 C G SEC16B Missense_Mutation p.G523A 0.20 deleterious(0) probably_damaging(0.96) TCGA-E2-A14R-01 1 186106065 186106065 C A HMCN1 Silent p.V4526V 0.10 TCGA-E2-A14R-01 1 186106066 186106066 C G HMCN1 Missense_Mutation p.Q4527E 0.09 possibly_damaging(0.827) TCGA-E2-A14R-01 1 187611009 187611009 G A ERVMER61-1 RNA 0.39 TCGA-E2-A14R-01 1 208257821 208257821 C T PLXNA2 Silent p.Q734Q 0.49 TCGA-E2-A14R-01 1 226420423 226420423 A G LIN9 Intron 0.67 TCGA-E2-A14R-01 1 228506947 228506947 G A OBSCN Missense_Mutation p.A5789T 0.12 benign(0.082) TCGA-E2-A14R-01 1 228509882 228509882 G A OBSCN Missense_Mutation p.E6071K 0.22 benign(0.059) TCGA-E2-A14R-01 1 236341802 236341802 T C GPR137B Missense_Mutation p.W185R 0.31 tolerated(0.35) benign(0.098) TCGA-E2-A14R-01 1 247582066 247582066 C G NLRP3 5'UTR 0.27 TCGA-E2-A14R-01 1 40945155 40945155 G C ZFP69 Missense_Mutation p.G41A 0.16 tolerated(0.18) benign(0.011) TCGA-E2-A14R-01 1 43824942 43824942 C T CDC20 Missense_Mutation p.P19L 0.10 deleterious(0) possibly_damaging(0.594) TCGA-E2-A14R-01 1 78099029 78099029 G A ZZZ3 Missense_Mutation p.S4F 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-E2-A14R-01 20 23966412 23966412 G T GGTLC1 Silent p.I141I 0.20 TCGA-E2-A14R-01 20 25060118 25060118 G C VSX1 Missense_Mutation p.L153V 0.17 tolerated(0.07) benign(0.084) TCGA-E2-A14R-01 20 35406195 35406195 C A SOGA1 3'UTR 0.40 TCGA-E2-A14R-01 20 49208955 49208955 C G FAM65C Missense_Mutation p.G831R 0.61 tolerated(0.11) probably_damaging(0.94) TCGA-E2-A14R-01 21 11039167 11039167 G A BAGE2 RNA 0.07 TCGA-E2-A14R-01 21 46309979 46309979 A T ITGB2 Missense_Mutation p.V524D 0.21 tolerated(0.68) benign(0.002) TCGA-E2-A14R-01 21 46897375 46897375 C T COL18A1 Missense_Mutation p.R507W 0.18 unknown(0) TCGA-E2-A14R-01 22 24909455 24909455 T A UPB1 Splice_Site p.X207_splice 0.45 TCGA-E2-A14R-01 22 40859362 40859362 A C MKL1 Intron 0.52 TCGA-E2-A14R-01 22 50900516 50900516 G A SBF1 Missense_Mutation p.T810M 0.08 deleterious(0) probably_damaging(0.999) TCGA-E2-A14R-01 2 152527544 152527544 A T NEB Missense_Mutation p.L1500Q 0.34 benign(0.42) TCGA-E2-A14R-01 2 169764208 169764231 CATTGACCTGCTGTGGTCCGTGCC - G6PC2 In_Frame_Del p.D231_I238del 0.27 TCGA-E2-A14R-01 2 36623768 36623791 ACTGATGACCAACTGCTTGGTTTT - CRIM1 In_Frame_Del p.T115_F122del 0.39 TCGA-E2-A14R-01 2 61505421 61505421 C A USP34 Splice_Site p.X1771_splice 0.51 TCGA-E2-A14R-01 2 86790514 86790514 C T CHMP3 Intron 0.60 TCGA-E2-A14R-01 2 96780849 96780849 C T ADRA2B Missense_Mutation p.G347D 0.11 tolerated(0.32) benign(0.065) TCGA-E2-A14R-01 3 11070440 11070440 G - SLC6A1 Frame_Shift_Del p.A367Hfs*6 0.41 TCGA-E2-A14R-01 3 133109180 133109180 T A TMEM108 Splice_Site p.X535_splice 0.30 TCGA-E2-A14R-01 3 141890304 141890304 C G GK5 Missense_Mutation p.E422Q 0.17 tolerated(0.11) probably_damaging(0.925) TCGA-E2-A14R-01 3 183896904 183896904 C A AP2M1 Missense_Mutation p.L112M 0.50 deleterious(0.05) probably_damaging(1) TCGA-E2-A14R-01 3 193188758 193188758 C G ATP13A4 Missense_Mutation p.R278P 0.18 tolerated(0.11) benign(0.068) TCGA-E2-A14R-01 3 44283717 44283717 C A TOPAZ1 Missense_Mutation p.P58T 0.38 tolerated(0.18) benign(0.065) TCGA-E2-A14R-01 3 47889002 47889002 G T DHX30 Nonsense_Mutation p.E696* 0.33 TCGA-E2-A14R-01 3 56173622 56173622 T C ERC2 Missense_Mutation p.Q463R 0.09 deleterious(0) possibly_damaging(0.869) TCGA-E2-A14R-01 4 115791933 115791933 A G NDST4 Silent p.P570P 0.56 TCGA-E2-A14R-01 4 13606196 13606196 A T BOD1L1 Missense_Mutation p.S776R 0.28 benign(0.048) TCGA-E2-A14R-01 4 25749852 25749852 C A SEL1L3 3'UTR 0.46 TCGA-E2-A14R-01 4 82061764 82061764 T C PRKG2 Missense_Mutation p.I489M 0.17 deleterious(0) possibly_damaging(0.844) TCGA-E2-A14R-01 5 141051178 141051178 T C ARAP3 Missense_Mutation p.K605E 0.28 tolerated(0.11) possibly_damaging(0.464) TCGA-E2-A14R-01 5 32233994 32233994 G C MTMR12 Missense_Mutation p.T520S 0.25 tolerated(0.83) benign(0.06) TCGA-E2-A14R-01 5 865540 865540 T A BRD9 Missense_Mutation p.Q561L 0.26 tolerated(0.82) benign(0.002) TCGA-E2-A14R-01 6 110107520 110107520 A T FIG4 Missense_Mutation p.N655I 0.16 tolerated(0.12) benign(0.011) TCGA-E2-A14R-01 6 160199604 160199604 G C TCP1 3'UTR 0.79 TCGA-E2-A14R-01 6 32905029 32905029 G T HLA-DMB Missense_Mutation p.A181D 0.25 deleterious(0.02) benign(0.056) TCGA-E2-A14R-01 6 33752167 33752167 A G LEMD2 Missense_Mutation p.L272P 0.33 deleterious(0) benign(0.354) TCGA-E2-A14R-01 6 4077645 4077645 C T FAM217A Missense_Mutation p.G2R 0.26 deleterious(0) probably_damaging(0.995) TCGA-E2-A14R-01 6 42988503 42988503 C T KLHDC3 3'UTR 0.25 TCGA-E2-A14R-01 6 44797565 44797565 A C SUPT3H Missense_Mutation p.F325L 0.11 tolerated(0.52) benign(0.164) TCGA-E2-A14R-01 6 56473155 56473155 A C DST Intron 0.32 TCGA-E2-A14R-01 6 73951884 73951884 A G KHDC1 Silent p.A136A 0.57 TCGA-E2-A14R-01 6 76072704 76072704 A T FILIP1 Intron 0.12 TCGA-E2-A14R-01 6 82461445 82461445 C G FAM46A Missense_Mutation p.K138N 0.50 tolerated(0.67) possibly_damaging(0.861) TCGA-E2-A14R-01 6 88299840 88299840 C G ORC3 5'Flank 0.42 TCGA-E2-A14R-01 7 112462311 112462311 C A C7orf60 Nonsense_Mutation p.E236* 0.39 TCGA-E2-A14R-01 7 127343366 127343366 A G SND1 Missense_Mutation p.I277V 0.06 tolerated(0.38) benign(0.022) TCGA-E2-A14R-01 7 130023284 130023284 A G CPA1 Missense_Mutation p.H179R 0.40 deleterious(0) probably_damaging(0.981) TCGA-E2-A14R-01 7 134717625 134717625 G A AGBL3 Missense_Mutation p.R150Q 0.52 tolerated(0.06) benign(0.311) TCGA-E2-A14R-01 7 151716746 151716746 C T GALNTL5 Nonsense_Mutation p.R398* 0.68 TCGA-E2-A14R-01 7 40172716 40172716 C G MPLKIP Missense_Mutation p.S161T 0.16 tolerated(0.19) possibly_damaging(0.682) TCGA-E2-A14R-01 7 48338055 48338055 A T ABCA13 Missense_Mutation p.I3098F 0.40 benign(0.139) TCGA-E2-A14R-01 7 65547366 65547366 G C ASL Missense_Mutation p.E73D 0.19 deleterious(0.04) probably_damaging(0.91) TCGA-E2-A14R-01 7 99565858 99565858 G A AZGP1 Missense_Mutation p.A178V 0.47 tolerated(0.1) probably_damaging(0.997) TCGA-E2-A14R-01 8 108334142 108334142 G C ANGPT1 Missense_Mutation p.L264V 0.10 tolerated(0.19) benign(0.038) TCGA-E2-A14R-01 8 122626723 122626723 C A HAS2 Nonsense_Mutation p.G429* 0.09 TCGA-E2-A14R-01 8 29990295 29990295 G A MBOAT4 Missense_Mutation p.H158Y 0.18 tolerated(0.7) benign(0.011) TCGA-E2-A14R-01 8 70588856 70588856 A G SLCO5A1 Silent p.L693L 0.15 TCGA-E2-A14R-01 8 90937878 90937879 TA - OSGIN2 3'UTR 0.11 TCGA-E2-A14R-01 9 100092921 100092921 C G CCDC180 Missense_Mutation p.Q760E 0.34 tolerated(0.46) probably_damaging(0.954) TCGA-E2-A14R-01 9 121929829 121929829 G A BRINP1 Missense_Mutation p.R607W 0.09 deleterious(0) probably_damaging(0.973) TCGA-E2-A14R-01 X 122538638 122538638 T C GRIA3 Missense_Mutation p.L458P 0.24 deleterious(0) probably_damaging(0.982) TCGA-E2-A14R-01 X 129147782 129147782 C T BCORL1 Missense_Mutation p.T345M 0.29 unknown(0) TCGA-E2-A14R-01 X 30260876 30260876 C G MAGEB4 Missense_Mutation p.I208M 0.23 deleterious(0) probably_damaging(1) TCGA-E2-A14R-01 X 37028186 37028216 ACAGTCTCCGCCCGGAGCCTCCCGATACTGG - FAM47C Frame_Shift_Del p.Y568* 0.31 TCGA-E2-A14R-01 X 49076144 49076144 A G CACNA1F Missense_Mutation p.V842A 0.22 tolerated(1) benign(0.211) TCGA-E2-A14R-01 X 54780124 54780124 G T ITIH6 Missense_Mutation p.H1104Q 0.33 tolerated(0.11) benign(0.017) TCGA-E2-A14R-01 X 70073144 70073144 G A TEX11 Missense_Mutation p.A135V 0.23 tolerated(0.92) benign(0) TCGA-E2-A14R-01 X 77528833 77528833 C A CYSLTR1 Missense_Mutation p.Q137H 0.47 tolerated(0.2) benign(0.005) TCGA-E2-A14T-01 10 15634257 15634257 T C ITGA8 Missense_Mutation p.N753S 0.04 tolerated(0.14) benign(0.403) TCGA-E2-A14T-01 10 44052732 44052732 C G ZNF239 Missense_Mutation p.D266H 0.23 deleterious(0.01) probably_damaging(1) TCGA-E2-A14T-01 10 71332756 71332756 C G NEUROG3 Missense_Mutation p.R15P 0.56 tolerated_low_confidence(0.22) benign(0.001) TCGA-E2-A14T-01 10 8115874 8115875 - G GATA3 Frame_Shift_Ins p.P409Afs*99 0.27 TCGA-E2-A14T-01 10 94653133 94653133 G A EXOC6 Silent p.A43A 0.25 TCGA-E2-A14T-01 11 17418752 17418752 C T ABCC8 Missense_Mutation p.E1326K 0.22 deleterious(0.02) benign(0.067) TCGA-E2-A14T-01 11 47808045 47808045 C T NUP160 Missense_Mutation p.A1270T 0.19 tolerated(0.2) benign(0.008) TCGA-E2-A14T-01 11 66456618 66456618 G A SPTBN2 Missense_Mutation p.R1995C 0.18 deleterious(0) probably_damaging(1) TCGA-E2-A14T-01 12 6879322 6879322 G C PTMS Splice_Site p.X66_splice 0.11 TCGA-E2-A14T-01 13 75933979 75933980 TC - TBC1D4 Frame_Shift_Del p.E365Dfs*2 0.15 TCGA-E2-A14T-01 14 105268210 105268210 G A ZBTB42 Missense_Mutation p.E226K 0.57 deleterious(0) benign(0.148) TCGA-E2-A14T-01 14 93686624 93686624 C - UBR7 Frame_Shift_Del p.L331* 0.23 TCGA-E2-A14T-01 16 23096260 23096260 C T USP31 Missense_Mutation p.R584H 0.25 deleterious(0.02) probably_damaging(0.981) TCGA-E2-A14T-01 17 26919888 26919888 T A SPAG5 Missense_Mutation p.Y125F 0.18 tolerated_low_confidence(0.67) benign(0.351) TCGA-E2-A14T-01 17 33585672 33585672 G C SLFN5 Intron 0.30 TCGA-E2-A14T-01 17 61864400 61864400 C T DDX42 5'UTR 0.08 TCGA-E2-A14T-01 17 61886223 61886223 G A DDX42 Missense_Mutation p.R356Q 0.11 tolerated(0.06) possibly_damaging(0.797) TCGA-E2-A14T-01 19 41235234 41235234 G T ITPKC Silent p.L461L 0.24 TCGA-E2-A14T-01 19 51483714 51483714 G A KLK7 Missense_Mutation p.T84M 0.17 tolerated(0.15) benign(0.008) TCGA-E2-A14T-01 19 9362034 9362034 T G OR7E24 Silent p.T105T 0.06 TCGA-E2-A14T-01 1 110466006 110466006 A T CSF1 Missense_Mutation p.R255W 0.08 deleterious(0) probably_damaging(1) TCGA-E2-A14T-01 1 21167444 21167444 G A EIF4G3 Silent p.T1272T 0.12 TCGA-E2-A14T-01 1 236706922 236706924 AGG - LGALS8 In_Frame_Del p.G247del 0.34 TCGA-E2-A14T-01 1 47610236 47610236 C T CYP4A22 Silent p.S304S 0.10 TCGA-E2-A14T-01 1 62737384 62737389 GAACCA - KANK4 Intron 0.21 TCGA-E2-A14T-01 21 35183459 35183459 G A ITSN1 Missense_Mutation p.A834T 0.15 tolerated(0.62) benign(0.004) TCGA-E2-A14T-01 2 105883738 105883738 C T TGFBRAP1 3'UTR 0.23 TCGA-E2-A14T-01 2 112944983 112944983 C T FBLN7 Missense_Mutation p.T407M 0.08 deleterious(0) possibly_damaging(0.84) TCGA-E2-A14T-01 2 179429426 179429426 A C TTN Missense_Mutation p.F27145V 0.27 TCGA-E2-A14T-01 2 72406489 72406489 C G EXOC6B Missense_Mutation p.G804A 0.16 tolerated(0.83) benign(0.005) TCGA-E2-A14T-01 3 125828868 125828868 C A ALDH1L1 Missense_Mutation p.V766L 0.31 deleterious(0.03) benign(0.001) TCGA-E2-A14T-01 3 48699138 48699138 C T CELSR3 Silent p.A310A 0.29 TCGA-E2-A14T-01 4 120057701 120057701 G A MYOZ2 Missense_Mutation p.M7I 0.06 deleterious(0.03) benign(0.119) TCGA-E2-A14T-01 5 169098135 169098135 C T DOCK2 Missense_Mutation p.T93M 0.17 deleterious(0.01) benign(0.188) TCGA-E2-A14T-01 5 24537632 24537632 C T CDH10 Missense_Mutation p.R128H 0.04 tolerated(0.23) probably_damaging(0.982) TCGA-E2-A14T-01 5 82937278 82937278 T A HAPLN1 3'UTR 0.14 TCGA-E2-A14T-01 7 100839243 100839243 C A MOGAT3 Missense_Mutation p.C337F 0.41 tolerated(0.48) benign(0.288) TCGA-E2-A14T-01 7 105255024 105255024 T A ATXN7L1 Missense_Mutation p.H586L 0.19 tolerated(0.57) possibly_damaging(0.632) TCGA-E2-A14T-01 7 136912653 136912653 T C PTN 3'UTR 0.15 TCGA-E2-A14T-01 7 139102373 139102373 G A LUC7L2 Missense_Mutation p.R366H 0.10 tolerated(0.12) unknown(0) TCGA-E2-A14T-01 9 104086374 104086380 CATCTTC - LPPR1 3'UTR 0.21 TCGA-E2-A14T-01 9 27180271 27180271 A C TEK Missense_Mutation p.K312T 0.04 tolerated(0.19) benign(0.126) TCGA-E2-A14T-01 9 33135287 33135287 G A B4GALT1 Missense_Mutation p.P183L 0.36 deleterious(0) possibly_damaging(0.79) TCGA-E2-A14T-01 X 119679311 119679311 A G CUL4B Missense_Mutation p.L321P 0.04 deleterious(0.02) benign(0.154) TCGA-E2-A14T-01 X 12906739 12906739 C T TLR7 Missense_Mutation p.H1038Y 0.07 tolerated(0.18) possibly_damaging(0.61) TCGA-E2-A14T-01 X 144909424 144909424 A G TMEM257 Missense_Mutation p.S77G 0.06 deleterious_low_confidence(0.01) benign(0.294) TCGA-E2-A14T-01 X 16778593 16778593 T A SYAP1 3'UTR 0.61 TCGA-E2-A14T-01 X 21550181 21550181 T C CNKSR2 Silent p.T433T 0.05 TCGA-E2-A14T-01 X 71812966 71812966 T G PHKA1 Missense_Mutation p.K1077N 0.10 tolerated(0.13) benign(0.021) TCGA-E2-A14V-01 10 103826885 103826885 A G HPS6 Missense_Mutation p.T552A 0.12 tolerated(1) benign(0.001) TCGA-E2-A14V-01 10 106075563 106075563 G A ITPRIP Missense_Mutation p.R83C 0.21 tolerated(0.09) possibly_damaging(0.517) TCGA-E2-A14V-01 10 106737218 106737218 G A SORCS3 Silent p.E307E 0.19 TCGA-E2-A14V-01 10 13320306 13320306 G C PHYH Missense_Mutation p.L338V 0.23 deleterious(0) possibly_damaging(0.841) TCGA-E2-A14V-01 10 50036872 50036872 C T WDFY4 Missense_Mutation p.H2091Y 0.06 tolerated(0.06) benign(0.02) TCGA-E2-A14V-01 10 5042535 5042535 C G AKR1C2 Intron 0.20 TCGA-E2-A14V-01 10 5966302 5966302 C G FBXO18 Missense_Mutation p.I860M 0.09 deleterious(0) probably_damaging(0.997) TCGA-E2-A14V-01 10 5966410 5966410 C G FBXO18 Missense_Mutation p.I896M 0.10 tolerated(0.28) benign(0.309) TCGA-E2-A14V-01 10 70056662 70056662 C T PBLD Silent p.P55P 0.04 TCGA-E2-A14V-01 11 104874068 104874068 G A CASP5 Missense_Mutation p.S172F 0.06 tolerated(0.19) benign(0.022) TCGA-E2-A14V-01 11 114569175 114569175 C G NXPE2 Missense_Mutation p.L181V 0.29 deleterious(0) probably_damaging(0.994) TCGA-E2-A14V-01 11 12315619 12315619 G A MICALCL Missense_Mutation p.S214N 0.20 tolerated(0.13) benign(0.258) TCGA-E2-A14V-01 11 2943415 2943415 C A SLC22A18 Silent p.I316I 0.34 TCGA-E2-A14V-01 11 59211520 59211520 C G OR5A1 Nonsense_Mutation p.Y293* 0.04 TCGA-E2-A14V-01 11 7689777 7689777 C G CYB5R2 Missense_Mutation p.R135T 0.17 deleterious(0.01) benign(0.162) TCGA-E2-A14V-01 12 12240232 12240232 A G BCL2L14 Silent p.G173G 0.13 TCGA-E2-A14V-01 12 12240238 12240238 C G BCL2L14 Missense_Mutation p.F175L 0.12 tolerated(0.55) benign(0.006) TCGA-E2-A14V-01 12 123265847 123265847 G A CCDC62 Silent p.T122T 0.22 TCGA-E2-A14V-01 12 130839549 130839549 A G PIWIL1 Missense_Mutation p.K430E 0.03 tolerated(0.05) benign(0.075) TCGA-E2-A14V-01 12 51590762 51590762 C T POU6F1 Intron 0.37 TCGA-E2-A14V-01 12 58010663 58010663 G A ARHGEF25 Missense_Mutation p.E616K 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E2-A14V-01 12 58125611 58125611 C A AGAP2 Missense_Mutation p.R645L 0.27 deleterious(0) probably_damaging(0.969) TCGA-E2-A14V-01 12 72176409 72176409 T C RAB21 Missense_Mutation p.I169T 0.16 deleterious(0) probably_damaging(0.989) TCGA-E2-A14V-01 13 21212477 21212477 G C IFT88 Missense_Mutation p.D474H 0.06 deleterious(0) possibly_damaging(0.572) TCGA-E2-A14V-01 13 37016895 37016895 G T CCNA1 3'UTR 0.46 TCGA-E2-A14V-01 14 20691885 20691885 A T OR11H6 Missense_Mutation p.H6L 0.23 deleterious_low_confidence(0.03) benign(0.01) TCGA-E2-A14V-01 14 23248035 23248035 T G SLC7A7 Missense_Mutation p.N246T 0.23 deleterious(0.03) possibly_damaging(0.856) TCGA-E2-A14V-01 14 67847477 67847477 G A EIF2S1 Missense_Mutation p.R192Q 0.30 deleterious(0.04) possibly_damaging(0.784) TCGA-E2-A14V-01 15 50555491 50555491 C G HDC Missense_Mutation p.E49Q 0.06 tolerated(0.68) benign(0.009) TCGA-E2-A14V-01 15 55647072 55647072 G A PIGB Missense_Mutation p.E472K 0.24 deleterious(0) probably_damaging(0.997) TCGA-E2-A14V-01 15 82450123 82450123 G A EFTUD1 Missense_Mutation p.T654M 0.39 deleterious(0) probably_damaging(0.996) TCGA-E2-A14V-01 16 18903661 18903662 - AA SMG1 Frame_Shift_Ins p.Y143Ffs*28 0.22 TCGA-E2-A14V-01 16 20387489 20387489 C G PDILT Missense_Mutation p.L148F 0.32 deleterious(0.01) probably_damaging(1) TCGA-E2-A14V-01 16 20976354 20976354 T G DNAH3 Missense_Mutation p.K2951T 0.37 tolerated(0.25) benign(0.015) TCGA-E2-A14V-01 16 23563498 23563498 C G EARS2 Missense_Mutation p.E89D 0.16 tolerated(0.09) benign(0.052) TCGA-E2-A14V-01 16 30724033 30724033 C G SRCAP Missense_Mutation p.T676S 0.19 unknown(0) TCGA-E2-A14V-01 16 3493134 3493134 G A ZNF597 Missense_Mutation p.T7M 0.07 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-E2-A14V-01 16 3611719 3611719 G A NLRC3 Missense_Mutation p.R714C 0.13 tolerated(0.05) benign(0.035) TCGA-E2-A14V-01 16 71682825 71682825 C T PHLPP2 Missense_Mutation p.E1314K 0.16 tolerated_low_confidence(0.74) benign(0.037) TCGA-E2-A14V-01 17 18058028 18058028 G A MYO15A Missense_Mutation p.R2728H 0.08 unknown(0) TCGA-E2-A14V-01 17 38230773 38230773 G T THRA Missense_Mutation p.G11V 0.25 deleterious_low_confidence(0.01) benign(0.265) TCGA-E2-A14V-01 17 38652354 38652354 C T TNS4 Missense_Mutation p.M108I 0.54 deleterious(0.01) probably_damaging(0.985) TCGA-E2-A14V-01 17 38652372 38652372 C T TNS4 Silent p.L102L 0.54 TCGA-E2-A14V-01 17 38652695 38652695 C T TNS4 5'UTR 0.54 TCGA-E2-A14V-01 17 38954526 38954526 C G KRT28 Silent p.L217L 0.04 TCGA-E2-A14V-01 17 38978562 38978562 G A KRT10 Silent p.S92S 0.02 TCGA-E2-A14V-01 17 39537398 39537398 C T KRT34 Silent p.L208L 0.05 TCGA-E2-A14V-01 17 39538002 39538002 C G KRT34 Missense_Mutation p.D174H 0.02 deleterious(0) probably_damaging(0.988) TCGA-E2-A14V-01 17 49270286 49270286 C T MBTD1 Missense_Mutation p.R516Q 0.29 tolerated(0.09) benign(0.326) TCGA-E2-A14V-01 17 56833291 56833291 A G PPM1E 5'UTR 0.08 TCGA-E2-A14V-01 17 61909276 61909276 G C PSMC5 Missense_Mutation p.V390L 0.07 tolerated(0.06) benign(0.045) TCGA-E2-A14V-01 17 68128288 68128288 C T KCNJ16 Silent p.Y20Y 0.07 TCGA-E2-A14V-01 17 68128510 68128510 C T KCNJ16 Silent p.L94L 0.25 TCGA-E2-A14V-01 18 15325695 15325695 A G RNU6-721P 5'Flank 0.18 TCGA-E2-A14V-01 18 28739438 28739438 G A DSC1 Missense_Mutation p.H40Y 0.04 tolerated(0.09) benign(0.015) TCGA-E2-A14V-01 18 43247050 43247050 G A SLC14A2 Missense_Mutation p.G570R 0.04 deleterious(0.04) benign(0.037) TCGA-E2-A14V-01 18 47015767 47015767 C T RPL17-C18orf32 Missense_Mutation p.V157I 0.16 tolerated(0.05) benign(0.054) TCGA-E2-A14V-01 18 6942104 6942104 G A LAMA1 Missense_Mutation p.H3068Y 0.24 tolerated(1) possibly_damaging(0.835) TCGA-E2-A14V-01 19 13941680 13941680 C T ZSWIM4 Missense_Mutation p.S929L 0.30 deleterious(0) unknown(0) TCGA-E2-A14V-01 19 15839053 15839053 C T OR10H2 Missense_Mutation p.S67L 0.03 deleterious(0) probably_damaging(0.999) TCGA-E2-A14V-01 19 49867154 49867154 A C DKKL1 5'UTR 0.18 TCGA-E2-A14V-01 19 53793014 53793014 C T BIRC8 Missense_Mutation p.G205E 0.26 deleterious(0) probably_damaging(0.986) TCGA-E2-A14V-01 19 54416214 54416214 G A CACNG7 Silent p.P43P 0.28 TCGA-E2-A14V-01 19 5776305 5776305 C T CATSPERD Missense_Mutation p.S692L 0.15 deleterious(0.02) possibly_damaging(0.885) TCGA-E2-A14V-01 19 58117885 58117885 C A ZNF530 Missense_Mutation p.S331Y 0.23 deleterious(0.04) benign(0.444) TCGA-E2-A14V-01 19 9226091 9226091 C A OR7G1 Missense_Mutation p.V117F 0.22 deleterious(0) possibly_damaging(0.58) TCGA-E2-A14V-01 1 152785404 152785404 C G LCE1B 3'UTR 0.22 TCGA-E2-A14V-01 1 159900122 159900122 G A IGSF9 Silent p.L641L 0.15 TCGA-E2-A14V-01 1 160920836 160920836 G C ITLN2 Nonsense_Mutation p.Y146* 0.12 TCGA-E2-A14V-01 1 181684488 181684488 G T CACNA1E Missense_Mutation p.A396S 0.13 deleterious(0.02) possibly_damaging(0.515) TCGA-E2-A14V-01 1 186316439 186316439 C G TPR Silent p.L976L 0.03 TCGA-E2-A14V-01 1 196694377 196694377 C A CFH Missense_Mutation p.S608Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-E2-A14V-01 1 210856855 210856855 G A KCNH1 Missense_Mutation p.S913L 0.14 tolerated_low_confidence(0.56) benign(0.001) TCGA-E2-A14V-01 1 223176630 223176630 C T DISP1 Nonsense_Mutation p.R631* 0.44 TCGA-E2-A14V-01 1 223536624 223536624 C T SUSD4 Silent p.T48T 0.09 TCGA-E2-A14V-01 1 225152251 225152251 A G DNAH14 Silent p.L146L 0.04 TCGA-E2-A14V-01 1 236208972 236208987 GAACGTGTTTCTCTGT - NID1 Splice_Site p.X176_splice 0.23 TCGA-E2-A14V-01 1 237777585 237777585 C T RYR2 Silent p.L1719L 0.20 TCGA-E2-A14V-01 1 32681437 32681437 T G DCDC2B Missense_Mutation p.L330R 0.21 tolerated(0.18) possibly_damaging(0.621) TCGA-E2-A14V-01 1 34663261 34663261 G T C1orf94 Missense_Mutation p.K252N 0.55 deleterious(0) probably_damaging(0.946) TCGA-E2-A14V-01 20 46279813 46279813 A C NCOA3 Missense_Mutation p.M1247L 0.19 tolerated_low_confidence(0.23) benign(0.005) TCGA-E2-A14V-01 20 58444998 58444998 C G SYCP2 Missense_Mutation p.R1199T 0.11 tolerated(0.5) benign(0.167) TCGA-E2-A14V-01 20 5903673 5903673 C G CHGB Missense_Mutation p.Q295E 0.13 tolerated(0.28) possibly_damaging(0.525) TCGA-E2-A14V-01 21 45755592 45755592 G T C21orf2 Intron 0.17 TCGA-E2-A14V-01 22 17288863 17288863 G T XKR3 Missense_Mutation p.P34H 0.21 deleterious(0) benign(0.416) TCGA-E2-A14V-01 2 166904154 166904154 C T SCN1A Missense_Mutation p.E385K 0.04 deleterious(0) probably_damaging(0.998) TCGA-E2-A14V-01 2 170751771 170751771 C G UBR3 Missense_Mutation p.Q396E 0.12 tolerated(0.23) probably_damaging(0.949) TCGA-E2-A14V-01 2 189599494 189599494 C A DIRC1 Missense_Mutation p.A52S 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.567) TCGA-E2-A14V-01 2 228563616 228563616 C T SLC19A3 Missense_Mutation p.C272Y 0.07 deleterious(0) probably_damaging(1) TCGA-E2-A14V-01 2 238233325 238233325 A - COL6A3 3'UTR 0.27 TCGA-E2-A14V-01 2 63169992 63169992 C G EHBP1 Missense_Mutation p.S477C 0.21 deleterious(0) probably_damaging(0.991) TCGA-E2-A14V-01 2 69870164 69870166 CTT - AAK1 In_Frame_Del p.K3del 0.35 TCGA-E2-A14V-01 3 119099788 119099788 C A ARHGAP31 Missense_Mutation p.A129D 0.20 deleterious(0.01) probably_damaging(1) TCGA-E2-A14V-01 3 119348292 119348292 G A PLA1A Missense_Mutation p.D450N 0.04 tolerated(0.14) benign(0.011) TCGA-E2-A14V-01 3 119462981 119462981 G A MAATS1 Missense_Mutation p.E614K 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-E2-A14V-01 3 12858049 12858049 G A CAND2 Missense_Mutation p.E540K 0.11 deleterious(0) probably_damaging(0.969) TCGA-E2-A14V-01 3 142681942 142681942 C G PAQR9 Missense_Mutation p.K79N 0.13 tolerated(0.05) benign(0.187) TCGA-E2-A14V-01 3 151085954 151085954 C T MED12L Silent p.D1120D 0.14 TCGA-E2-A14V-01 3 154884783 154884783 G C MME Missense_Mutation p.E585Q 0.03 deleterious(0) probably_damaging(0.989) TCGA-E2-A14V-01 3 172064204 172064204 G A FNDC3B Missense_Mutation p.D780N 0.06 tolerated(1) benign(0.008) TCGA-E2-A14V-01 3 178952075 178952075 A T PIK3CA Missense_Mutation p.N1044Y 0.40 tolerated(0.5) benign(0.068) TCGA-E2-A14V-01 3 183013121 183013121 C T MCF2L2 Missense_Mutation p.V548M 0.03 tolerated(0.13) benign(0.04) TCGA-E2-A14V-01 3 33600858 33600858 G C CLASP2 Missense_Mutation p.L992V 0.03 tolerated(0.16) probably_damaging(0.992) TCGA-E2-A14V-01 3 38182851 38182851 C T MYD88 3'UTR 0.24 TCGA-E2-A14V-01 3 38592777 38592777 T C SCN5A Missense_Mutation p.T1696A 0.25 deleterious(0) probably_damaging(0.995) TCGA-E2-A14V-01 3 47158198 47158198 A G SETD2 Missense_Mutation p.C1501R 0.18 deleterious(0) probably_damaging(0.998) TCGA-E2-A14V-01 4 186111743 186111743 G A KIAA1430 Missense_Mutation p.S203L 0.04 tolerated(0.1) unknown(0) TCGA-E2-A14V-01 4 85642669 85642669 C T WDFY3 Missense_Mutation p.E2500K 0.22 tolerated(0.19) benign(0.011) TCGA-E2-A14V-01 4 955823 955823 C G DGKQ Silent p.L754L 0.12 TCGA-E2-A14V-01 4 9785145 9785145 G A DRD5 3'UTR 0.25 TCGA-E2-A14V-01 5 101813402 101813402 T A SLCO6A1 Silent p.T260T 0.25 TCGA-E2-A14V-01 5 102482291 102482291 C T PPIP5K2 Missense_Mutation p.P183L 0.16 deleterious(0) probably_damaging(0.996) TCGA-E2-A14V-01 5 140531491 140531491 C T PCDHB6 Silent p.D551D 0.22 TCGA-E2-A14V-01 5 141008753 141008753 G C HDAC3 Missense_Mutation p.F199L 0.04 deleterious(0) probably_damaging(1) TCGA-E2-A14V-01 5 150028362 150028362 G A SYNPO Silent p.T419T 0.19 TCGA-E2-A14V-01 5 16701887 16701887 C T MYO10 Missense_Mutation p.E873K 0.04 tolerated(0.5) benign(0.024) TCGA-E2-A14V-01 5 26885845 26885845 C T CDH9 Missense_Mutation p.R587H 0.40 tolerated(0.07) possibly_damaging(0.787) TCGA-E2-A14V-01 5 35800068 35800068 A T SPEF2 Splice_Site p.X1611_splice 0.20 TCGA-E2-A14V-01 5 54436202 54436202 C T CDC20B Missense_Mutation p.V174M 0.14 tolerated(0.07) benign(0.035) TCGA-E2-A14V-01 5 75914139 75914139 G C F2RL2 Missense_Mutation p.F131L 0.04 tolerated(0.44) benign(0.045) TCGA-E2-A14V-01 6 102503346 102503346 A C GRIK2 Missense_Mutation p.Q818P 0.13 tolerated(0.07) possibly_damaging(0.906) TCGA-E2-A14V-01 6 24566862 24566862 T C KIAA0319 Missense_Mutation p.Y752C 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-E2-A14V-01 6 497377 497377 C G EXOC2 Missense_Mutation p.G850A 0.17 deleterious(0.02) benign(0.024) TCGA-E2-A14V-01 7 117021097 117021097 G C ASZ1 Missense_Mutation p.L305V 0.14 deleterious(0) probably_damaging(0.996) TCGA-E2-A14V-01 7 149171796 149171796 G A ZNF746 Silent p.F539F 0.11 TCGA-E2-A14V-01 7 21946010 21946010 C T CDCA7L Missense_Mutation p.R273Q 0.21 deleterious(0.01) possibly_damaging(0.473) TCGA-E2-A14V-01 7 30931710 30931710 C T FAM188B 3'UTR 0.16 TCGA-E2-A14V-01 7 55492946 55492946 G C LANCL2 Splice_Site p.X337_splice 0.03 TCGA-E2-A14V-01 7 75959370 75959370 C G YWHAG Missense_Mutation p.E90Q 0.03 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A14V-01 7 98254334 98254334 C T NPTX2 Silent p.Y248Y 0.14 TCGA-E2-A14V-01 8 121468800 121468800 C G MTBP Missense_Mutation p.Q213E 0.16 deleterious(0.03) possibly_damaging(0.728) TCGA-E2-A14V-01 8 125498596 125498596 G A RNF139 Missense_Mutation p.D236N 0.19 tolerated(0.56) benign(0.044) TCGA-E2-A14V-01 8 19805748 19805748 C T LPL Missense_Mutation p.T49I 0.16 tolerated(0.1) benign(0.008) TCGA-E2-A14V-01 8 23302096 23302096 G C ENTPD4 Missense_Mutation p.P146A 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A14V-01 8 39695672 39695672 G A ADAM2 Silent p.L11L 0.29 TCGA-E2-A14V-01 8 62566159 62566162 GTGT - ASPH Frame_Shift_Del p.H127Lfs*65 0.18 TCGA-E2-A14V-01 9 114305318 114305318 T C ZNF483 Silent p.S701S 0.26 TCGA-E2-A14V-01 9 137620530 137620530 C T COL5A1 Silent p.D267D 0.39 TCGA-E2-A14V-01 9 14179762 14179762 T G NFIB Missense_Mutation p.S194R 0.20 tolerated(0.12) probably_damaging(0.974) TCGA-E2-A14V-01 9 90501430 90501430 G C SPATA31E1 Missense_Mutation p.L676F 0.09 tolerated_low_confidence(0.35) possibly_damaging(0.719) TCGA-E2-A14V-01 9 95178955 95178956 - TGCT OMD Frame_Shift_Ins p.F296Sfs*16 0.12 TCGA-E2-A14V-01 X 103498917 103498917 G A ESX1 Missense_Mutation p.R142C 0.16 tolerated(0.21) probably_damaging(0.953) TCGA-E2-A14V-01 X 114881868 114881889 AGATATACCCTCAATGTCCTGG - PLS3 Splice_Site p.X504_splice 0.12 TCGA-E2-A14V-01 X 129063526 129063526 A T UTP14A Missense_Mutation p.N753I 0.11 tolerated_low_confidence(0.13) benign(0.021) TCGA-E2-A14V-01 X 152853866 152853866 G A FAM58A Missense_Mutation p.S233F 0.16 tolerated(0.11) benign(0.013) TCGA-E2-A14V-01 X 32305815 32305815 T C DMD Missense_Mutation p.I2041V 0.06 benign(0) TCGA-E2-A14V-01 X 49093646 49093646 G A CCDC22 Silent p.A48A 0.05 TCGA-E2-A14V-01 X 69669583 69669583 G A DLG3 Missense_Mutation p.E193K 0.04 deleterious(0.04) benign(0.002) TCGA-E2-A14W-01 10 123263332 123263332 C A FGFR2 Missense_Mutation p.D472Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-E2-A14W-01 10 123263333 123263333 C A FGFR2 Missense_Mutation p.E471D 0.50 tolerated(0.41) probably_damaging(0.916) TCGA-E2-A14W-01 10 69955248 69955255 GCCCATTC - MYPN Frame_Shift_Del p.P1040Qfs*44 0.41 TCGA-E2-A14W-01 10 87615835 87615835 G C GRID1 Missense_Mutation p.S355C 0.33 deleterious(0) probably_damaging(0.999) TCGA-E2-A14W-01 10 96058171 96058171 T A PLCE1 Missense_Mutation p.S1735T 0.50 tolerated(0.76) benign(0.001) TCGA-E2-A14W-01 11 117308077 117308077 G A DSCAML1 Missense_Mutation p.T1554M 0.34 deleterious(0) probably_damaging(0.979) TCGA-E2-A14W-01 11 17482153 17482153 C T ABCC8 Missense_Mutation p.R298H 0.32 deleterious(0.02) possibly_damaging(0.508) TCGA-E2-A14W-01 11 18727602 18727602 C T IGSF22 Silent p.V1224V 0.32 TCGA-E2-A14W-01 11 2181019 2181019 G C INS 3'UTR 0.24 TCGA-E2-A14W-01 11 33667477 33667477 G A KIAA1549L Silent p.S1588S 0.34 TCGA-E2-A14W-01 11 61624993 61624993 G C FADS2 Missense_Mutation p.K291N 0.33 deleterious(0.01) benign(0.281) TCGA-E2-A14W-01 11 64525907 64525907 A T PYGM Splice_Site p.X142_splice 0.38 TCGA-E2-A14W-01 11 64674910 64674931 GGCTGGGAAGGAGACCGCGAAG - ATG2A Splice_Site p.X883_splice 0.35 TCGA-E2-A14W-01 11 64789400 64789400 G T ARL2 3'UTR 0.30 TCGA-E2-A14W-01 11 64972292 64972292 G A CAPN1 Missense_Mutation p.G435D 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-E2-A14W-01 12 101705565 101705565 C A UTP20 Missense_Mutation p.A767D 0.34 deleterious(0.02) benign(0.111) TCGA-E2-A14W-01 12 113753164 113753164 C - SLC8B1 Frame_Shift_Del p.V371Sfs*2 0.31 TCGA-E2-A14W-01 12 120295405 120295405 C G CIT Missense_Mutation p.Q112H 0.32 tolerated(0.27) benign(0.012) TCGA-E2-A14W-01 12 133158042 133158042 T A FBRSL1 Missense_Mutation p.S661T 0.37 tolerated(0.89) benign(0.013) TCGA-E2-A14W-01 12 78542637 78542637 C T NAV3 Missense_Mutation p.R1575W 0.48 deleterious(0) probably_damaging(1) TCGA-E2-A14W-01 13 32907409 32907413 ATCTT - BRCA2 Frame_Shift_Del p.S599* 0.42 TCGA-E2-A14W-01 14 64688249 64688249 C G SYNE2 Intron 0.36 TCGA-E2-A14W-01 15 100185956 100185956 C T MEF2A Missense_Mutation p.S82L 0.03 deleterious(0.01) benign(0.004) TCGA-E2-A14W-01 15 44962197 44962197 G A PATL2 Missense_Mutation p.P249L 0.39 deleterious(0.01) possibly_damaging(0.585) TCGA-E2-A14W-01 15 45335550 45335550 A G SORD Missense_Mutation p.M66V 0.27 deleterious(0) possibly_damaging(0.789) TCGA-E2-A14W-01 15 73409162 73409162 A C NEO1 Missense_Mutation p.T138P 0.26 deleterious(0.04) probably_damaging(0.925) TCGA-E2-A14W-01 15 74367321 74367322 GG T GOLGA6A Frame_Shift_Del p.P290Tfs*4 0.34 TCGA-E2-A14W-01 15 81216988 81216988 C G KIAA1199 Silent p.V743V 0.25 TCGA-E2-A14W-01 16 24817933 24817933 A G TNRC6A Silent p.Q1456Q 0.53 TCGA-E2-A14W-01 16 81303899 81303899 G A BCMO1 Missense_Mutation p.E327K 0.48 tolerated(0.38) benign(0.004) TCGA-E2-A14W-01 17 3775903 3775920 AATCGTCGATGAATGGGC - CAMKK1 In_Frame_Del p.C389_D394del 0.42 TCGA-E2-A14W-01 17 74729124 74729124 C G METTL23 Nonsense_Mutation p.S50* 0.14 TCGA-E2-A14W-01 17 74934211 74934211 C A MGAT5B Missense_Mutation p.L533M 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-E2-A14W-01 18 34289076 34289076 A G FHOD3 Missense_Mutation p.E577G 0.35 tolerated_low_confidence(0.14) benign(0.001) TCGA-E2-A14W-01 19 11464539 11464539 C T CCDC159 Missense_Mutation p.S254L 0.45 tolerated_low_confidence(0.05) benign(0.009) TCGA-E2-A14W-01 19 17954274 17954280 AGCCCAA - JAK3 Frame_Shift_Del p.F110Wfs*35 0.40 TCGA-E2-A14W-01 19 2116710 2116710 G A AP3D1 Missense_Mutation p.S632L 0.43 tolerated(0.06) benign(0.036) TCGA-E2-A14W-01 19 21933913 21933913 A G ZNF100 Intron 0.33 TCGA-E2-A14W-01 19 35530106 35530106 G T SCN1B 3'Flank 0.40 TCGA-E2-A14W-01 19 38990591 38990591 C A RYR1 Missense_Mutation p.H2420N 0.37 benign(0.027) TCGA-E2-A14W-01 19 50195607 50195607 T A CPT1C Missense_Mutation p.L33H 0.32 tolerated(0.11) possibly_damaging(0.907) TCGA-E2-A14W-01 19 51022417 51022417 G T LRRC4B Silent p.R185R 0.30 TCGA-E2-A14W-01 19 52877847 52877847 C A ZNF880 Intron 0.38 TCGA-E2-A14W-01 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.36 tolerated(0.26) probably_damaging(0.999) TCGA-E2-A14W-01 19 6981117 6981117 T A EMR4P RNA 0.21 TCGA-E2-A14W-01 19 9324875 9324876 CC - OR7D4 Frame_Shift_Del p.G213Dfs*? 0.30 TCGA-E2-A14W-01 1 109656937 109656937 G A KIAA1324 Silent p.P44P 0.14 TCGA-E2-A14W-01 1 112997128 112997130 GAT - CTTNBP2NL In_Frame_Del p.D131del 0.42 TCGA-E2-A14W-01 1 145415526 145415526 C G HFE2 Missense_Mutation p.I115M 0.29 tolerated(0.05) probably_damaging(0.995) TCGA-E2-A14W-01 1 145530313 145530313 C T ITGA10 Silent p.N176N 0.31 TCGA-E2-A14W-01 1 161953515 161953515 C G OLFML2B Missense_Mutation p.A735P 0.34 deleterious(0) probably_damaging(0.979) TCGA-E2-A14W-01 1 17316489 17316489 G A ATP13A2 Nonsense_Mutation p.Q808* 0.28 TCGA-E2-A14W-01 1 248737334 248737334 G T OR2T34 Missense_Mutation p.A242D 0.34 deleterious(0) probably_damaging(0.999) TCGA-E2-A14W-01 1 47333672 47333672 C G CYP4Z2P RNA 0.37 TCGA-E2-A14W-01 1 62293244 62293244 C - INADL Frame_Shift_Del p.P657Lfs*21 0.28 TCGA-E2-A14W-01 20 5556066 5556066 T C GPCPD1 Missense_Mutation p.T332A 0.05 tolerated(0.39) benign(0.02) TCGA-E2-A14W-01 21 22664443 22664443 A T NCAM2 Silent p.A167A 0.34 TCGA-E2-A14W-01 21 28212818 28212828 GAGGTGCCAGG - ADAMTS1 Frame_Shift_Del p.P478Vfs*26 0.26 TCGA-E2-A14W-01 21 34635572 34635572 G A IFNAR2 Missense_Mutation p.D439N 0.24 tolerated(0.19) possibly_damaging(0.811) TCGA-E2-A14W-01 21 47783719 47783719 G A PCNT Missense_Mutation p.D827N 0.29 benign(0.006) TCGA-E2-A14W-01 22 24765272 24765272 A C SPECC1L Missense_Mutation p.K1024T 0.30 deleterious(0) probably_damaging(0.998) TCGA-E2-A14W-01 22 26299726 26299726 G T MYO18B Missense_Mutation p.K1692N 0.13 deleterious(0.02) benign(0.36) TCGA-E2-A14W-01 22 29534662 29534662 G T KREMEN1 Missense_Mutation p.A339S 0.60 tolerated(0.38) benign(0.024) TCGA-E2-A14W-01 22 50967953 50967953 C T TYMP Silent p.V62V 0.48 TCGA-E2-A14W-01 2 108998294 108998294 T C SULT1C4 Silent p.T82T 0.27 TCGA-E2-A14W-01 2 163236470 163236470 A - KCNH7 Frame_Shift_Del p.P1009Hfs*27 0.26 TCGA-E2-A14W-01 2 179613021 179613021 T - TTN Intron 0.30 TCGA-E2-A14W-01 2 196749335 196749335 T C DNAH7 Missense_Mutation p.I1913V 0.43 tolerated(1) benign(0.001) TCGA-E2-A14W-01 2 203084812 203084812 A C SUMO1 Silent p.T10T 0.32 TCGA-E2-A14W-01 2 207530636 207530636 A C DYTN Missense_Mutation p.D366E 0.32 tolerated(0.65) benign(0.015) TCGA-E2-A14W-01 2 20886840 20886842 ATA - C2orf43 In_Frame_Del p.Y267del 0.49 TCGA-E2-A14W-01 2 210559282 210559282 C T MAP2 Silent p.Y796Y 0.18 TCGA-E2-A14W-01 2 218686502 218686502 C T TNS1 Missense_Mutation p.S1074N 0.26 tolerated(0.12) benign(0.014) TCGA-E2-A14W-01 2 231906087 231906087 G A C2orf72 Silent p.K237K 0.40 TCGA-E2-A14W-01 2 37217922 37217922 C G HEATR5B Missense_Mutation p.D1856H 0.30 deleterious(0) probably_damaging(0.998) TCGA-E2-A14W-01 2 39249723 39249723 G A SOS1 Missense_Mutation p.H616Y 0.34 deleterious(0) probably_damaging(1) TCGA-E2-A14W-01 2 62450052 62450052 A T B3GNT2 Missense_Mutation p.T233S 0.32 tolerated(0.61) benign(0.013) TCGA-E2-A14W-01 2 74604811 74604827 TCTCTGGGGAAGTAGTA - DCTN1 Frame_Shift_Del p.T104* 0.14 TCGA-E2-A14W-01 2 85066288 85066288 A T TRABD2A Missense_Mutation p.F277I 0.27 deleterious(0) probably_damaging(0.999) TCGA-E2-A14W-01 3 119153657 119153657 C - TMEM39A Frame_Shift_Del p.P396Lfs*23 0.23 TCGA-E2-A14W-01 3 135721060 135721060 C A PPP2R3A Silent p.S240S 0.42 TCGA-E2-A14W-01 3 135745705 135745705 C T PPP2R3A Missense_Mutation p.T676I 0.35 deleterious(0.04) benign(0.004) TCGA-E2-A14W-01 3 148917582 148917582 A T CP Missense_Mutation p.L473H 0.02 tolerated(0.06) probably_damaging(0.928) TCGA-E2-A14W-01 3 16306469 16306469 T C DPH3 5'UTR 0.33 TCGA-E2-A14W-01 3 167320043 167320043 T G WDR49 Missense_Mutation p.K42Q 0.23 tolerated(0.25) benign(0.04) TCGA-E2-A14W-01 3 18458465 18458465 A T SATB1 Missense_Mutation p.L106H 0.39 deleterious(0) probably_damaging(0.997) TCGA-E2-A14W-01 3 42916932 42916940 GCTGAGTGT ACC CYP8B1 In_Frame_Del p.I123_A126delinsMV 0.46 TCGA-E2-A14W-01 3 48658374 48658382 GTGCAGGAC - TMEM89 In_Frame_Del p.V125_H127del 0.64 TCGA-E2-A14W-01 3 97614826 97614826 A G CRYBG3 Missense_Mutation p.H585R 0.31 tolerated(0.68) benign(0.002) TCGA-E2-A14W-01 4 104066383 104066383 C T CENPE Missense_Mutation p.D1561N 0.22 benign(0.357) TCGA-E2-A14W-01 4 1836571 1836571 C A LETM1 Splice_Site p.X292_splice 0.33 TCGA-E2-A14W-01 4 71510070 71510070 G C ENAM Missense_Mutation p.S976T 0.37 tolerated(0.07) benign(0.062) TCGA-E2-A14W-01 4 90169748 90169758 GTTTTGTGGCC - GPRIN3 Frame_Shift_Del p.G502Rfs*8 0.34 TCGA-E2-A14W-01 4 941540 941540 C A TMEM175 Silent p.R5R 0.38 TCGA-E2-A14W-01 5 111496465 111496492 TAGCGCAGCGGCCGATGGTACAGCCCGC - EPB41L4A 3'Flank 0.23 TCGA-E2-A14W-01 5 122729131 122729131 A C CEP120 Missense_Mutation p.L225V 0.29 deleterious(0) probably_damaging(0.986) TCGA-E2-A14W-01 5 124080558 124080569 TCCAAATCAGCG - ZNF608 In_Frame_Del p.D38_L41del 0.14 TCGA-E2-A14W-01 5 129072926 129072926 G C ADAMTS19 3'UTR 0.35 TCGA-E2-A14W-01 5 140186783 140186783 C A PCDHA4 Missense_Mutation p.S4Y 0.39 deleterious_low_confidence(0.03) benign(0.006) TCGA-E2-A14W-01 5 150483215 150483215 C G ANXA6 Missense_Mutation p.M626I 0.33 tolerated(0.27) benign(0.021) TCGA-E2-A14W-01 5 156675929 156675929 T C ITK Missense_Mutation p.V568A 0.07 tolerated(0.1) probably_damaging(0.98) TCGA-E2-A14W-01 5 42718684 42718684 G A GHR Missense_Mutation p.E359K 0.34 tolerated(0.17) benign(0.088) TCGA-E2-A14W-01 5 53751731 53751731 C T HSPB3 Missense_Mutation p.P38S 0.07 deleterious(0) probably_damaging(1) TCGA-E2-A14W-01 5 79743961 79743961 G - ZFYVE16 Frame_Shift_Del p.E948Kfs*5 0.29 TCGA-E2-A14W-01 6 160328951 160328951 G C MAS1 Missense_Mutation p.E322Q 0.49 deleterious_low_confidence(0.02) possibly_damaging(0.849) TCGA-E2-A14W-01 6 160514595 160514595 G C IGF2R Intron 0.43 TCGA-E2-A14W-01 6 26056168 26056182 CGCGGCCGGCTTCTT - HIST1H1C In_Frame_Del p.K159_A163del 0.66 TCGA-E2-A14W-01 6 27925573 27925573 C G OR2B6 Silent p.L185L 0.35 TCGA-E2-A14W-01 6 36710076 36710076 G C CPNE5 Missense_Mutation p.P584R 0.51 deleterious(0) benign(0.002) TCGA-E2-A14W-01 6 90338952 90338952 C G ANKRD6 Missense_Mutation p.S536C 0.40 tolerated(0.08) benign(0.005) TCGA-E2-A14W-01 6 90660211 90660211 G A BACH2 Silent p.C538C 0.31 TCGA-E2-A14W-01 7 103183270 103183270 C G RELN Missense_Mutation p.K2193N 0.31 tolerated(0.11) probably_damaging(0.995) TCGA-E2-A14W-01 7 149981858 149981858 C T ACTR3C Missense_Mutation p.R183Q 0.28 deleterious(0) probably_damaging(0.985) TCGA-E2-A14W-01 7 149981862 149981862 C A ACTR3C Missense_Mutation p.V182L 0.29 tolerated(0.18) benign(0.019) TCGA-E2-A14W-01 7 30092481 30092493 AGGTAAAAACAAA - PLEKHA8 Splice_Site p.X266_splice 0.32 TCGA-E2-A14W-01 7 35057529 35057529 T A DPY19L1 Missense_Mutation p.T53S 0.25 tolerated(0.41) benign(0.021) TCGA-E2-A14W-01 7 92760834 92760834 A T SAMD9L Missense_Mutation p.L1484Q 0.05 deleterious(0) probably_damaging(0.935) TCGA-E2-A14W-01 8 17486008 17486008 T C PDGFRL Missense_Mutation p.L173P 0.58 deleterious(0) probably_damaging(0.926) TCGA-E2-A14W-01 8 6669666 6669666 T G XKR5 RNA 0.05 TCGA-E2-A14W-01 8 69002851 69002851 G A PREX2 Silent p.Q717Q 0.17 TCGA-E2-A14W-01 X 32328199 32328199 C T DMD Silent p.K2039K 0.61 TCGA-E2-A14W-01 X 47498688 47498688 G C ELK1 Missense_Mutation p.S87C 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-E2-A14W-01 X 49454099 49454099 C G PAGE1 Missense_Mutation p.G114R 0.51 deleterious(0.01) probably_damaging(0.988) TCGA-E2-A14W-01 X 6451836 6451836 C G VCX3A Missense_Mutation p.E171Q 0.39 tolerated(0.27) unknown(0) TCGA-E2-A14W-01 X 71351178 71351178 G C RGAG4 Missense_Mutation p.F71L 0.62 tolerated_low_confidence(0.1) benign(0.031) TCGA-E2-A14W-01 X 7812007 7812007 G C VCX Missense_Mutation p.E191Q 0.31 tolerated(0.3) unknown(0) TCGA-E2-A14X-01 11 1020730 1020730 C T MUC6 Silent p.P1198P 0.04 TCGA-E2-A14X-01 11 108173681 108173681 G A ATM Silent p.K1807K 0.06 TCGA-E2-A14X-01 12 130855727 130855728 - T PIWIL1 Frame_Shift_Ins p.I779Yfs*10 0.16 TCGA-E2-A14X-01 13 19748195 19748195 G A TUBA3C Silent p.A387A 0.15 TCGA-E2-A14X-01 14 21109743 21109743 G C OR6S1 Silent p.V36V 0.24 TCGA-E2-A14X-01 14 31071093 31071093 C T G2E3 Silent p.Y290Y 0.29 TCGA-E2-A14X-01 14 32562091 32562091 G A ARHGAP5 Missense_Mutation p.R739H 0.11 tolerated(0.06) possibly_damaging(0.624) TCGA-E2-A14X-01 15 35168164 35168164 A G AQR Missense_Mutation p.I1070T 0.30 deleterious(0) probably_damaging(0.991) TCGA-E2-A14X-01 15 42740787 42740787 G C ZNF106 Missense_Mutation p.S850W 0.28 deleterious(0) probably_damaging(0.955) TCGA-E2-A14X-01 16 15022331 15022331 G A RP11-958N24.1 RNA 0.29 TCGA-E2-A14X-01 16 23116870 23116870 T C USP31 Silent p.Q327Q 0.25 TCGA-E2-A14X-01 16 682837 682837 G A WFIKKN1 Missense_Mutation p.A143T 0.45 deleterious(0) probably_damaging(1) TCGA-E2-A14X-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.37 TCGA-E2-A14X-01 17 76471537 76471537 G A DNAH17 Silent p.D2764D 0.31 TCGA-E2-A14X-01 18 56202919 56202919 G A ALPK2 Silent p.G1500G 0.04 TCGA-E2-A14X-01 19 23542476 23542476 C G ZNF91 Missense_Mutation p.G1102A 0.32 deleterious(0.04) probably_damaging(0.968) TCGA-E2-A14X-01 19 6495886 6495886 G A TUBB4A Silent p.Y208Y 0.10 TCGA-E2-A14X-01 1 94032999 94032999 C T BCAR3 Silent p.P712P 0.24 TCGA-E2-A14X-01 22 50599794 50599794 C T MOV10L1 Intron 0.38 TCGA-E2-A14X-01 2 118677883 118677883 G T CCDC93 3'UTR 0.18 TCGA-E2-A14X-01 2 1670056 1670056 G A PXDN Silent p.S407S 0.09 TCGA-E2-A14X-01 2 179480082 179480082 C T TTN Missense_Mutation p.R16197H 0.36 TCGA-E2-A14X-01 3 122459884 122459884 G A HSPBAP1 Missense_Mutation p.P301L 0.14 tolerated(0.09) benign(0.168) TCGA-E2-A14X-01 3 49832471 49832471 G A CDHR4 Missense_Mutation p.P365L 0.11 tolerated(0.07) benign(0.097) TCGA-E2-A14X-01 3 52430775 52430775 A - DNAH1 Frame_Shift_Del p.K3858Rfs*38 0.10 TCGA-E2-A14X-01 4 187003591 187003591 C T TLR3 Missense_Mutation p.R251W 0.36 deleterious(0.02) benign(0.023) TCGA-E2-A14X-01 5 11346626 11346626 C G CTNND2 Missense_Mutation p.A496P 0.14 deleterious(0.01) possibly_damaging(0.616) TCGA-E2-A14X-01 5 178608136 178608136 G A ADAMTS2 Silent p.D304D 0.32 TCGA-E2-A14X-01 5 33453503 33453503 G A TARS Missense_Mutation p.E180K 0.17 tolerated(0.24) benign(0.015) TCGA-E2-A14X-01 6 31922367 31922367 C T NELFE Missense_Mutation p.R236Q 0.12 tolerated(0.18) unknown(0) TCGA-E2-A14X-01 7 43591895 43591895 C A HECW1 Silent p.I1490I 0.16 TCGA-E2-A14X-01 8 113277766 113277766 C T CSMD3 Missense_Mutation p.D3188N 0.07 deleterious(0.02) possibly_damaging(0.639) TCGA-E2-A14X-01 8 113702220 113702220 C T CSMD3 Missense_Mutation p.D678N 0.05 tolerated(0.21) benign(0.202) TCGA-E2-A14X-01 8 92988171 92988171 G A RUNX1T1 Missense_Mutation p.A448V 0.07 tolerated(0.24) benign(0.001) TCGA-E2-A14X-01 9 103204393 103204393 C T MSANTD3 Missense_Mutation p.S58F 0.20 deleterious(0) probably_damaging(0.995) TCGA-E2-A14X-01 9 103204395 103204395 C T MSANTD3 Nonsense_Mutation p.Q59* 0.20 TCGA-E2-A14X-01 X 153699919 153699919 G A PLXNA3 Missense_Mutation p.D1820N 0.14 deleterious(0) benign(0.233) TCGA-E2-A14X-01 X 21887836 21887836 C T MBTPS2 Intron 0.11 TCGA-E2-A14X-01 X 72433234 72433234 A G NAP1L2 Silent p.F365F 0.18 TCGA-E2-A14Y-01 10 119078457 119078457 C T PDZD8 Missense_Mutation p.E342K 0.29 deleterious(0) probably_damaging(0.997) TCGA-E2-A14Y-01 10 56077174 56077174 G A PCDH15 Nonsense_Mutation p.R245* 0.35 TCGA-E2-A14Y-01 10 61946501 61946501 C G ANK3 Missense_Mutation p.R686T 0.38 probably_damaging(0.952) TCGA-E2-A14Y-01 11 62297977 62297977 T C AHNAK Silent p.G1304G 0.45 TCGA-E2-A14Y-01 11 64369160 64369160 C T SLC22A12 3'UTR 0.29 TCGA-E2-A14Y-01 11 64722223 64722228 CCCTAC - C11orf85 Splice_Site p.X49_splice 0.27 TCGA-E2-A14Y-01 12 124323098 124323098 G A DNAH10 Silent p.E1548E 0.03 TCGA-E2-A14Y-01 12 33529612 33529612 A T SYT10 3'UTR 0.08 TCGA-E2-A14Y-01 12 46244915 46244915 C A ARID2 Silent p.V1003V 0.02 TCGA-E2-A14Y-01 12 6426507 6426507 C T PLEKHG6 Silent p.L265L 0.32 TCGA-E2-A14Y-01 13 100511220 100511220 G C CLYBL Missense_Mutation p.D119H 0.04 deleterious(0) probably_damaging(0.996) TCGA-E2-A14Y-01 13 19751640 19751640 G A TUBA3C Silent p.Y161Y 0.35 TCGA-E2-A14Y-01 15 66629421 66629421 C G TIPIN Missense_Mutation p.D261H 0.40 tolerated_low_confidence(0.08) benign(0.06) TCGA-E2-A14Y-01 15 74468237 74468237 G A ISLR Silent p.T346T 0.27 TCGA-E2-A14Y-01 15 78790420 78790420 G A IREB2 Missense_Mutation p.D943N 0.03 tolerated(0.11) benign(0.005) TCGA-E2-A14Y-01 16 69294160 69294160 A G SNTB2 Silent p.E334E 0.66 TCGA-E2-A14Y-01 17 17716089 17716090 - AG SREBF1 Frame_Shift_Ins p.P1128Cfs*110 0.36 TCGA-E2-A14Y-01 17 27296863 27296863 G A SEZ6 Silent p.V322V 0.21 TCGA-E2-A14Y-01 17 4621248 4621248 C T ARRB2 Missense_Mutation p.S205L 0.56 tolerated(0.38) probably_damaging(0.988) TCGA-E2-A14Y-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.59 deleterious(0) probably_damaging(0.997) TCGA-E2-A14Y-01 18 47438435 47438435 G C MYO5B Missense_Mutation p.I733M 0.04 deleterious(0) possibly_damaging(0.571) TCGA-E2-A14Y-01 18 59947889 59947889 A C KIAA1468 Missense_Mutation p.I1021L 0.08 deleterious(0.01) benign(0.311) TCGA-E2-A14Y-01 19 11277272 11277272 C T KANK2 Missense_Mutation p.D848N 0.29 tolerated(0.09) probably_damaging(0.997) TCGA-E2-A14Y-01 19 11892354 11892354 C G ZNF441 Nonsense_Mutation p.S572* 0.03 TCGA-E2-A14Y-01 19 15511970 15511970 G C AKAP8L Silent p.A269A 0.30 TCGA-E2-A14Y-01 19 38104051 38104051 G A ZNF540 Missense_Mutation p.E624K 0.42 tolerated(0.87) benign(0.136) TCGA-E2-A14Y-01 19 4494310 4494310 C A HDGFRP2 Silent p.R354R 0.22 TCGA-E2-A14Y-01 19 49014822 49014822 G A LMTK3 Silent p.P33P 0.55 TCGA-E2-A14Y-01 19 56206663 56206663 C T EPN1 Silent p.L644L 0.40 TCGA-E2-A14Y-01 1 116933404 116933404 G A ATP1A1 Missense_Mutation p.G408D 0.60 tolerated(0.06) possibly_damaging(0.746) TCGA-E2-A14Y-01 1 152278409 152278409 A T FLG Missense_Mutation p.S2985T 0.31 benign(0.038) TCGA-E2-A14Y-01 1 155448544 155448544 G A ASH1L Missense_Mutation p.L1373F 0.04 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-E2-A14Y-01 1 158436273 158436273 A T OR10K1 Missense_Mutation p.T308S 0.30 tolerated(0.68) benign(0.066) TCGA-E2-A14Y-01 20 51871700 51871700 G A TSHZ2 Missense_Mutation p.R568Q 0.19 tolerated(0.86) possibly_damaging(0.605) TCGA-E2-A14Y-01 22 24458410 24458410 G C CABIN1 Missense_Mutation p.D540H 0.06 deleterious(0.01) possibly_damaging(0.815) TCGA-E2-A14Y-01 2 108460141 108460141 C T RGPD4 Missense_Mutation p.T246M 0.26 deleterious(0) probably_damaging(0.93) TCGA-E2-A14Y-01 2 160667159 160667159 G A LY75-CD302 Missense_Mutation p.S1526L 0.04 deleterious(0.01) probably_damaging(0.943) TCGA-E2-A14Y-01 2 204320207 204320207 G C RAPH1 Missense_Mutation p.L419V 0.03 probably_damaging(0.999) TCGA-E2-A14Y-01 2 39997101 39997101 C G THUMPD2 Missense_Mutation p.E141Q 0.04 tolerated(0.15) benign(0.372) TCGA-E2-A14Y-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A14Y-01 3 49159432 49159432 C T LAMB2 Missense_Mutation p.G1623D 0.41 tolerated(0.44) benign(0.006) TCGA-E2-A14Y-01 4 15964689 15964689 G T FGFBP2 Missense_Mutation p.P22T 0.37 tolerated(0.65) possibly_damaging(0.896) TCGA-E2-A14Y-01 5 7889262 7889262 C G MTRR Missense_Mutation p.L428V 0.42 deleterious(0) probably_damaging(0.999) TCGA-E2-A14Y-01 6 33246447 33246447 C T B3GALT4 3'UTR 0.25 TCGA-E2-A14Y-01 6 86332352 86332353 TG - SYNCRIP Frame_Shift_Del p.N285Kfs*7 0.28 TCGA-E2-A14Y-01 7 5569207 5569207 G T ACTB Silent p.R28R 0.32 TCGA-E2-A14Y-01 7 72418729 72418729 A T POM121 Intron 0.45 TCGA-E2-A14Y-01 7 77016709 77016709 G C GSAP Missense_Mutation p.L142V 0.03 deleterious(0.03) probably_damaging(1) TCGA-E2-A14Y-01 8 16961987 16961987 G C MICU3 Missense_Mutation p.E358Q 0.56 tolerated(0.11) benign(0.04) TCGA-E2-A14Y-01 8 41582042 41582042 G A ANK1 Missense_Mutation p.H248Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-E2-A14Y-01 9 19096691 19096691 G C HAUS6 Missense_Mutation p.L69V 0.29 tolerated(0.14) benign(0.082) TCGA-E2-A14Y-01 X 118284280 118284280 G A KIAA1210 Missense_Mutation p.P88L 0.39 tolerated_low_confidence(0.68) benign(0.005) TCGA-E2-A14Y-01 X 7267969 7267969 C T STS Silent p.F473F 0.04 TCGA-E2-A14Z-01 10 102054793 102054793 C T PKD2L1 Missense_Mutation p.V482I 0.13 tolerated(1) benign(0.023) TCGA-E2-A14Z-01 10 89717727 89717737 GTGATATCAAA - PTEN Frame_Shift_Del p.D252Rfs*42 0.33 TCGA-E2-A14Z-01 10 96580363 96580363 C A CYP2C19 Silent p.L310L 0.25 TCGA-E2-A14Z-01 11 125280153 125280153 T C PKNOX2 Missense_Mutation p.V217A 0.15 tolerated(0.1) benign(0.016) TCGA-E2-A14Z-01 11 126396533 126396533 C T KIRREL3 Silent p.S61S 0.15 TCGA-E2-A14Z-01 11 5444328 5444328 C G OR51Q1 Missense_Mutation p.Q300E 0.14 tolerated(0.11) benign(0.023) TCGA-E2-A14Z-01 11 56185676 56185676 T C OR5R1 Silent p.V11V 0.19 TCGA-E2-A14Z-01 11 62381062 62381062 G T ROM1 Silent p.L103L 0.23 TCGA-E2-A14Z-01 11 71809321 71809321 G A LAMTOR1 Intron 0.16 TCGA-E2-A14Z-01 12 113532664 113532664 T A DTX1 Missense_Mutation p.V433E 0.64 deleterious(0) benign(0.309) TCGA-E2-A14Z-01 13 35517230 35517230 C T NBEA Silent p.I91I 0.53 TCGA-E2-A14Z-01 13 42149921 42149921 C T VWA8 Missense_Mutation p.M1775I 0.49 tolerated(0.5) benign(0) TCGA-E2-A14Z-01 14 23421871 23421871 G A HAUS4 Missense_Mutation p.P26L 0.24 tolerated(1) probably_damaging(0.999) TCGA-E2-A14Z-01 15 98995099 98995099 C A FAM169B Missense_Mutation p.A109S 0.35 tolerated(0.07) probably_damaging(0.999) TCGA-E2-A14Z-01 15 98995100 98995100 C A FAM169B Missense_Mutation p.E108D 0.35 tolerated(0.3) benign(0.035) TCGA-E2-A14Z-01 16 25266659 25266659 C T ZKSCAN2 Missense_Mutation p.V152M 0.26 deleterious(0.05) benign(0.197) TCGA-E2-A14Z-01 16 72984482 72984482 G A ZFHX3 Silent p.I1034I 0.42 TCGA-E2-A14Z-01 17 1201703 1201703 C A TUSC5 3'UTR 0.17 TCGA-E2-A14Z-01 17 3620003 3620003 C T ITGAE Silent p.V1141V 0.30 TCGA-E2-A14Z-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.47 deleterious(0) probably_damaging(0.997) TCGA-E2-A14Z-01 18 24722889 24722889 T A CHST9 Intron 0.38 TCGA-E2-A14Z-01 19 10781755 10781755 C G ILF3 Missense_Mutation p.H37D 0.19 tolerated(0.13) probably_damaging(0.998) TCGA-E2-A14Z-01 19 1272339 1272339 G A CIRBP Intron 0.16 TCGA-E2-A14Z-01 19 40376680 40376680 G T FCGBP Nonsense_Mutation p.C3914* 0.12 TCGA-E2-A14Z-01 19 40541078 40541078 C T ZNF780B Missense_Mutation p.G563E 0.11 tolerated(0.09) benign(0.008) TCGA-E2-A14Z-01 19 40704346 40704346 C T MAP3K10 Silent p.F249F 0.38 TCGA-E2-A14Z-01 19 43411997 43411997 G T PSG6 Missense_Mutation p.P239H 0.13 tolerated(0.1) probably_damaging(0.933) TCGA-E2-A14Z-01 19 50322461 50322461 C G MED25 Missense_Mutation p.F71L 0.24 deleterious(0) probably_damaging(0.95) TCGA-E2-A14Z-01 19 51738413 51738413 G T CD33 Silent p.G249G 0.21 TCGA-E2-A14Z-01 1 115226908 115226908 C G AMPD1 Missense_Mutation p.K186N 0.15 tolerated(0.2) benign(0.04) TCGA-E2-A14Z-01 1 150959080 150959080 G A ANXA9 Silent p.G185G 0.10 TCGA-E2-A14Z-01 1 157789876 157789876 G A FCRL1 5'UTR 0.17 TCGA-E2-A14Z-01 1 157789879 157789879 T A FCRL1 5'UTR 0.21 TCGA-E2-A14Z-01 1 212985604 212985604 G A TATDN3 Silent p.V212V 0.37 TCGA-E2-A14Z-01 1 242159362 242159362 A C MAP1LC3C 3'UTR 0.31 TCGA-E2-A14Z-01 1 29023445 29023445 G A GMEB1 Missense_Mutation p.M159I 0.14 tolerated(0.59) possibly_damaging(0.5) TCGA-E2-A14Z-01 20 44692114 44692114 G A NCOA5 Silent p.L345L 0.24 TCGA-E2-A14Z-01 20 62658961 62658961 G A PRPF6 Silent p.K737K 0.22 TCGA-E2-A14Z-01 21 45181962 45181962 G T PDXK 3'UTR 0.20 TCGA-E2-A14Z-01 2 105897089 105897089 G A TGFBRAP1 Missense_Mutation p.H405Y 0.12 deleterious(0) probably_damaging(0.957) TCGA-E2-A14Z-01 2 160087413 160087413 C G TANC1 Missense_Mutation p.L1826V 0.09 tolerated_low_confidence(1) benign(0.005) TCGA-E2-A14Z-01 2 166032944 166032944 A C SCN3A 5'UTR 0.16 TCGA-E2-A14Z-01 2 36704101 36704101 G A CRIM1 Missense_Mutation p.C354Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-E2-A14Z-01 2 60688630 60688630 C T BCL11A Missense_Mutation p.E473K 0.41 deleterious(0.01) benign(0.305) TCGA-E2-A14Z-01 3 100413856 100413856 T G GPR128 3'UTR 0.14 TCGA-E2-A14Z-01 3 126157177 126157177 C G ZXDC 3'UTR 0.33 TCGA-E2-A14Z-01 3 138417861 138417861 T C PIK3CB Missense_Mutation p.N553S 0.07 tolerated(0.26) possibly_damaging(0.602) TCGA-E2-A14Z-01 3 141277776 141277776 G T RASA2 Nonsense_Mutation p.E245* 0.16 TCGA-E2-A14Z-01 3 158983341 158983341 G A IQCJ 3'UTR 0.31 TCGA-E2-A14Z-01 3 20212139 20212139 C T SGOL1 Intron 0.34 TCGA-E2-A14Z-01 3 27418337 27418337 C T SLC4A7 Splice_Site p.X1188_splice 0.27 TCGA-E2-A14Z-01 3 39226889 39226889 G A XIRP1 Missense_Mutation p.P1350S 0.21 tolerated(0.19) benign(0.003) TCGA-E2-A14Z-01 3 50005657 50005657 C A RBM6 Missense_Mutation p.Q267K 0.13 tolerated(0.41) probably_damaging(0.993) TCGA-E2-A14Z-01 3 52019910 52019910 G C ACY1 Missense_Mutation p.E103Q 0.24 tolerated(0.38) benign(0.006) TCGA-E2-A14Z-01 3 57132384 57132384 G A IL17RD Silent p.L449L 0.16 TCGA-E2-A14Z-01 3 57232103 57232103 G T HESX1 3'UTR 0.34 TCGA-E2-A14Z-01 4 156721140 156721140 C T GUCY1B3 Silent p.Y363Y 0.14 TCGA-E2-A14Z-01 4 39191292 39191292 G A WDR19 Missense_Mutation p.D61N 0.09 tolerated(0.58) benign(0.205) TCGA-E2-A14Z-01 4 4323035 4323035 G C ZBTB49 Missense_Mutation p.D764H 0.28 deleterious(0) possibly_damaging(0.866) TCGA-E2-A14Z-01 4 57337902 57337902 G C SRP72 Missense_Mutation p.E83Q 0.27 deleterious(0) possibly_damaging(0.817) TCGA-E2-A14Z-01 4 57337949 57337949 G C SRP72 Missense_Mutation p.L98F 0.27 deleterious(0.03) possibly_damaging(0.796) TCGA-E2-A14Z-01 4 99579428 99579428 G T TSPAN5 5'UTR 0.21 TCGA-E2-A14Z-01 5 140022500 140022500 C T TMCO6 Intron 0.15 TCGA-E2-A14Z-01 5 140604455 140604455 G A PCDHB14 Missense_Mutation p.V460I 0.19 tolerated_low_confidence(0.16) benign(0.042) TCGA-E2-A14Z-01 5 160059363 160059363 C G ATP10B Missense_Mutation p.E465Q 0.33 deleterious(0.04) probably_damaging(0.959) TCGA-E2-A14Z-01 5 176943429 176943429 C T DDX41 Missense_Mutation p.R53Q 0.19 tolerated(0.46) benign(0) TCGA-E2-A14Z-01 5 37605229 37605229 G A WDR70 Silent p.T327T 0.11 TCGA-E2-A14Z-01 5 40843622 40843622 G C CARD6 Missense_Mutation p.V218L 0.23 tolerated(0.25) benign(0.009) TCGA-E2-A14Z-01 5 60188025 60188025 C A ERCC8 Intron 0.16 TCGA-E2-A14Z-01 5 68809919 68809919 C A OCLN Missense_Mutation p.P292T 0.06 deleterious(0.01) probably_damaging(1) TCGA-E2-A14Z-01 5 75914384 75914384 C T F2RL2 Missense_Mutation p.E50K 0.39 tolerated(0.79) benign(0.011) TCGA-E2-A14Z-01 5 90024745 90024745 T G GPR98 Missense_Mutation p.F3474C 0.16 benign(0.035) TCGA-E2-A14Z-01 5 95011246 95011246 G A SPATA9 Missense_Mutation p.S83F 0.15 deleterious(0) probably_damaging(0.998) TCGA-E2-A14Z-01 6 102074363 102074363 A C GRIK2 Missense_Mutation p.Q131P 0.27 deleterious(0) probably_damaging(0.978) TCGA-E2-A14Z-01 6 138734237 138734237 C G HEBP2 3'UTR 0.23 TCGA-E2-A14Z-01 6 138734246 138734246 G T HEBP2 3'UTR 0.23 TCGA-E2-A14Z-01 6 139165717 139165717 G A ECT2L Missense_Mutation p.R255Q 0.08 tolerated(0.07) benign(0.007) TCGA-E2-A14Z-01 6 151334924 151334924 G A MTHFD1L Missense_Mutation p.G759S 0.24 deleterious(0) probably_damaging(0.994) TCGA-E2-A14Z-01 6 160858113 160858113 G A SLC22A3 Silent p.S386S 0.22 TCGA-E2-A14Z-01 6 31727737 31727737 G A MSH5 Missense_Mutation p.R557Q 0.21 tolerated(0.31) benign(0.366) TCGA-E2-A14Z-01 6 52849324 52849324 G A GSTA4 Nonsense_Mutation p.Q118* 0.27 TCGA-E2-A14Z-01 6 73952144 73952144 C - KHDC1 Frame_Shift_Del p.E106Rfs*37 0.10 TCGA-E2-A14Z-01 6 83835322 83835322 C G DOPEY1 Missense_Mutation p.T530R 0.08 deleterious(0) possibly_damaging(0.905) TCGA-E2-A14Z-01 6 94068126 94068126 C A EPHA7 Missense_Mutation p.C279F 0.26 deleterious(0) possibly_damaging(0.795) TCGA-E2-A14Z-01 6 97338946 97338946 G A NDUFAF4 3'UTR 0.22 TCGA-E2-A14Z-01 7 134678284 134678284 G A AGBL3 Silent p.Q55Q 0.23 TCGA-E2-A14Z-01 7 138764558 138764559 AC - ZC3HAV1 Frame_Shift_Del p.P379Hfs*16 0.16 TCGA-E2-A14Z-01 7 24718895 24718895 T C MPP6 Silent p.D420D 0.12 TCGA-E2-A14Z-01 7 27181585 27181585 T C HOXA5 Missense_Mutation p.I228V 0.33 deleterious(0) possibly_damaging(0.895) TCGA-E2-A14Z-01 8 29989709 29989709 A G MBOAT4 Missense_Mutation p.V353A 0.08 tolerated(0.34) benign(0.054) TCGA-E2-A14Z-01 8 68178346 68178346 G A ARFGEF1 Missense_Mutation p.S673L 0.16 deleterious(0.04) possibly_damaging(0.546) TCGA-E2-A14Z-01 9 19094362 19094362 C T HAUS6 Missense_Mutation p.D86N 0.10 deleterious(0.05) probably_damaging(0.929) TCGA-E2-A14Z-01 9 33676093 33676093 A T PTENP1 RNA 0.14 TCGA-E2-A14Z-01 X 114244201 114244201 A C IL13RA2 Silent p.T245T 0.31 TCGA-E2-A14Z-01 X 12736883 12736883 G T FRMPD4 Missense_Mutation p.R1313L 0.33 deleterious_low_confidence(0) possibly_damaging(0.669) TCGA-E2-A14Z-01 X 1407467 1407467 T A CSF2RA Missense_Mutation p.V92D 0.14 deleterious(0) probably_damaging(0.959) TCGA-E2-A14Z-01 X 140786506 140786506 G A SPANXD Silent p.N19N 0.21 TCGA-E2-A14Z-01 X 153035989 153035989 C T PLXNB3 Silent p.R657R 0.12 TCGA-E2-A14Z-01 X 50089661 50089662 - A CCNB3 Frame_Shift_Ins p.P1223Tfs*5 0.09 TCGA-E2-A150-01 10 11908656 11908660 CTCTG - PROSER2 Frame_Shift_Del p.C90Pfs*14 0.73 TCGA-E2-A150-01 10 135099012 135099012 C A TUBGCP2 Missense_Mutation p.A643S 0.13 tolerated(0.32) benign(0.163) TCGA-E2-A150-01 10 31810768 31810768 G A ZEB1 Silent p.T836T 0.12 TCGA-E2-A150-01 10 55944938 55944938 G A PCDH15 Missense_Mutation p.L466F 0.17 tolerated(0.06) probably_damaging(0.979) TCGA-E2-A150-01 10 56077150 56077150 C T PCDH15 Missense_Mutation p.V253M 0.07 deleterious(0) probably_damaging(0.983) TCGA-E2-A150-01 10 64425930 64425930 T C ZNF365 Missense_Mutation p.L421P 0.13 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-E2-A150-01 10 7244480 7244480 T G SFMBT2 Missense_Mutation p.Q483H 0.20 tolerated(0.32) possibly_damaging(0.663) TCGA-E2-A150-01 11 104879560 104879560 G A CASP5 Missense_Mutation p.T65M 0.06 tolerated_low_confidence(0.26) benign(0.32) TCGA-E2-A150-01 12 24970952 24970952 A G BCAT1 Missense_Mutation p.V396A 0.11 deleterious(0.03) benign(0.057) TCGA-E2-A150-01 12 25260902 25260902 G A LRMP Missense_Mutation p.A470T 0.10 deleterious(0.04) benign(0.313) TCGA-E2-A150-01 12 83526162 83526162 G C TMTC2 Missense_Mutation p.K835N 0.08 tolerated_low_confidence(0.08) benign(0.014) TCGA-E2-A150-01 13 99040682 99040682 C T FARP1 Silent p.L269L 0.08 TCGA-E2-A150-01 14 101526096 101526096 T C MIR154 RNA 0.60 TCGA-E2-A150-01 14 93180780 93180780 C T LGMN Missense_Mutation p.V141M 0.08 deleterious(0) probably_damaging(0.993) TCGA-E2-A150-01 15 20876497 20876497 A C NBEAP1 RNA 0.06 TCGA-E2-A150-01 15 45554217 45554217 A C SLC28A2 Missense_Mutation p.S59R 0.04 tolerated(0.57) benign(0.001) TCGA-E2-A150-01 15 72875632 72875632 G A ARIH1 Silent p.%3D 0.08 TCGA-E2-A150-01 15 77329611 77329611 G A PSTPIP1 3'UTR 0.27 TCGA-E2-A150-01 15 90176983 90176983 A C KIF7 Silent p.L842L 0.10 TCGA-E2-A150-01 16 20955961 20955961 G T DNAH3 Missense_Mutation p.L3790I 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-E2-A150-01 16 72166731 72166731 C G PMFBP1 Missense_Mutation p.E455Q 0.06 tolerated(0.91) benign(0.064) TCGA-E2-A150-01 17 11522985 11522985 G T DNAH9 Nonsense_Mutation p.E413* 0.19 TCGA-E2-A150-01 17 11572872 11572872 A C DNAH9 Missense_Mutation p.E1038D 0.08 benign(0.002) TCGA-E2-A150-01 17 55058560 55058560 T A SCPEP1 Missense_Mutation p.F65Y 0.60 tolerated(1) benign(0.021) TCGA-E2-A150-01 17 56285503 56285503 C T MKS1 Silent p.T376T 0.22 TCGA-E2-A150-01 17 7578402 7578402 G T TP53 Nonsense_Mutation p.C176* 0.50 TCGA-E2-A150-01 18 42643576 42643576 C G SETBP1 Silent p.P1568P 0.50 TCGA-E2-A150-01 18 618062 618062 C T CLUL1 Missense_Mutation p.A21V 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-E2-A150-01 18 65180277 65180277 C T DSEL Silent p.A533A 0.04 TCGA-E2-A150-01 19 36243521 36243521 C T LIN37 Intron 0.08 TCGA-E2-A150-01 19 39690990 39690990 G T NCCRP1 Nonsense_Mutation p.E185* 0.19 TCGA-E2-A150-01 19 40480708 40480708 G A PSMC4 Missense_Mutation p.A216T 0.22 deleterious(0) probably_damaging(0.99) TCGA-E2-A150-01 19 48620916 48620916 G C LIG1 Missense_Mutation p.I854M 0.24 deleterious(0.01) benign(0.442) TCGA-E2-A150-01 19 49661106 49661106 T G TRPM4 5'UTR 0.24 TCGA-E2-A150-01 19 51301334 51301334 G A C19orf48 3'UTR 0.21 TCGA-E2-A150-01 19 8842175 8842175 C G OR2Z1 Missense_Mutation p.P262R 0.04 deleterious(0.02) probably_damaging(0.984) TCGA-E2-A150-01 1 12071603 12071603 A T MFN2 Missense_Mutation p.Y752F 0.07 tolerated(0.4) probably_damaging(0.992) TCGA-E2-A150-01 1 12089158 12089158 C T MIIP Missense_Mutation p.R206W 0.05 deleterious(0) probably_damaging(1) TCGA-E2-A150-01 1 152816068 152816068 C T LCE6A Silent p.N24N 0.17 TCGA-E2-A150-01 1 154543672 154543672 G A CHRNB2 Missense_Mutation p.G125S 0.42 deleterious(0) probably_damaging(1) TCGA-E2-A150-01 1 158517488 158517488 G C OR6Y1 Silent p.R136R 0.20 TCGA-E2-A150-01 1 176740195 176740195 C A PAPPA2 Missense_Mutation p.L1532M 0.09 deleterious(0.01) benign(0.416) TCGA-E2-A150-01 1 182368717 182368717 A G TEDDM1 3'UTR 0.18 TCGA-E2-A150-01 1 20009551 20009551 G A TMCO4 Silent p.P629P 0.15 TCGA-E2-A150-01 1 215953312 215953312 C T USH2A Silent p.V3604V 0.36 TCGA-E2-A150-01 1 247014111 247014111 C A AHCTF1 Missense_Mutation p.D1742Y 0.13 tolerated(0.95) possibly_damaging(0.45) TCGA-E2-A150-01 1 39951240 39951240 G A MACF1 Missense_Mutation p.S5356N 0.04 possibly_damaging(0.885) TCGA-E2-A150-01 1 55059698 55059698 C G ACOT11 Missense_Mutation p.R153G 0.13 tolerated(0.45) benign(0.002) TCGA-E2-A150-01 1 67507959 67507959 G C SLC35D1 Missense_Mutation p.P230R 0.31 deleterious(0) probably_damaging(0.998) TCGA-E2-A150-01 1 75708648 75708648 G C SLC44A5 Missense_Mutation p.Q132E 0.10 tolerated(0.14) benign(0.019) TCGA-E2-A150-01 1 78194177 78194177 T A USP33 Missense_Mutation p.N344I 0.15 tolerated(0.2) benign(0.297) TCGA-E2-A150-01 20 52192498 52192498 A G ZNF217 Silent p.N935N 0.12 TCGA-E2-A150-01 20 52570137 52570137 G T BCAS1 Nonsense_Mutation p.S505* 0.33 TCGA-E2-A150-01 2 135893183 135893183 A C RAB3GAP1 Missense_Mutation p.K535T 0.05 deleterious(0.03) benign(0.025) TCGA-E2-A150-01 2 158406760 158406760 C A ACVR1C Missense_Mutation p.R230I 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-E2-A150-01 2 17697195 17697195 C T RAD51AP2 Missense_Mutation p.D830N 0.03 tolerated(0.19) benign(0.046) TCGA-E2-A150-01 2 211471611 211471611 T G CPS1 Missense_Mutation p.I719S 0.23 deleterious(0) probably_damaging(0.999) TCGA-E2-A150-01 2 212543900 212543900 C T ERBB4 Missense_Mutation p.G500E 0.19 deleterious(0.03) benign(0.075) TCGA-E2-A150-01 2 220354392 220354392 A C SPEG Silent p.P2884P 0.18 TCGA-E2-A150-01 2 48035532 48035532 T G FBXO11 Missense_Mutation p.I864L 0.04 deleterious(0) benign(0.112) TCGA-E2-A150-01 2 86705821 86705821 T G KDM3A Missense_Mutation p.L760R 0.14 tolerated(0.39) possibly_damaging(0.534) TCGA-E2-A150-01 3 121613255 121613255 G A SLC15A2 5'UTR 0.24 TCGA-E2-A150-01 3 128996136 128996136 G C COPG1 Splice_Site p.X832_splice 0.24 TCGA-E2-A150-01 3 169644926 169644926 A G SAMD7 Silent p.E292E 0.08 TCGA-E2-A150-01 3 183911471 183911471 C T ABCF3 Silent p.R705R 0.20 TCGA-E2-A150-01 4 113484412 113484412 G - C4orf21 Frame_Shift_Del p.S1486* 0.17 TCGA-E2-A150-01 4 163032463 163032463 C T FSTL5 Missense_Mutation p.G29D 0.04 tolerated_low_confidence(0.27) possibly_damaging(0.469) TCGA-E2-A150-01 4 6612853 6612853 A G MAN2B2 Missense_Mutation p.D804G 0.15 tolerated(0.41) benign(0.02) TCGA-E2-A150-01 4 70715248 70715248 C T SULT1E1 Missense_Mutation p.A135T 0.22 tolerated(0.09) benign(0.124) TCGA-E2-A150-01 4 94547528 94547528 C G GRID2 Missense_Mutation p.R768G 0.18 deleterious(0) probably_damaging(0.979) TCGA-E2-A150-01 4 94547529 94547529 G A GRID2 Missense_Mutation p.R768Q 0.19 deleterious(0) probably_damaging(0.948) TCGA-E2-A150-01 5 140961888 140961888 C T DIAPH1 Missense_Mutation p.M225I 0.05 unknown(0) TCGA-E2-A150-01 5 156464344 156464344 G A HAVCR1 Missense_Mutation p.T289M 0.12 tolerated(0.36) benign(0.01) TCGA-E2-A150-01 5 178413928 178413928 C T GRM6 Missense_Mutation p.D471N 0.09 tolerated(0.53) benign(0.318) TCGA-E2-A150-01 5 34033468 34033468 G A C1QTNF3 Missense_Mutation p.R171W 0.04 deleterious(0) probably_damaging(0.991) TCGA-E2-A150-01 5 52216261 52216261 G A ITGA1 Missense_Mutation p.R752Q 0.36 tolerated(0.22) benign(0.054) TCGA-E2-A150-01 6 30571347 30571347 C T PPP1R10 Missense_Mutation p.V557I 0.17 tolerated(0.21) benign(0.07) TCGA-E2-A150-01 6 31700074 31700074 C T CLIC1 Missense_Mutation p.V162I 0.04 tolerated(0.49) benign(0) TCGA-E2-A150-01 6 49754174 49754174 T G PGK2 Missense_Mutation p.T243P 0.05 deleterious(0.01) possibly_damaging(0.84) TCGA-E2-A150-01 6 65301142 65301142 T G EYS Missense_Mutation p.N1540H 0.36 deleterious(0) probably_damaging(0.972) TCGA-E2-A150-01 6 74123407 74123407 A C DDX43 Silent p.I465I 0.05 TCGA-E2-A150-01 6 75799910 75799910 C T COL12A1 Missense_Mutation p.A2953T 0.08 benign(0.3) TCGA-E2-A150-01 6 83905471 83905471 T A RWDD2A Missense_Mutation p.V120E 0.35 deleterious(0) possibly_damaging(0.591) TCGA-E2-A150-01 7 140476796 140476796 A G BRAF Missense_Mutation p.L537S 0.20 deleterious(0) probably_damaging(1) TCGA-E2-A150-01 7 22330848 22330848 T G RAPGEF5 Missense_Mutation p.K78N 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-E2-A150-01 8 53569190 53569190 T A RB1CC1 Nonsense_Mutation p.K1067* 0.30 TCGA-E2-A150-01 9 140938304 140938304 G A CACNA1B Missense_Mutation p.R1122Q 0.51 deleterious(0.01) possibly_damaging(0.636) TCGA-E2-A150-01 9 6252889 6252889 C A IL33 Missense_Mutation p.L123I 0.04 tolerated(0.39) benign(0.029) TCGA-E2-A150-01 9 6252896 6252896 C A IL33 Missense_Mutation p.S125Y 0.05 tolerated(0.31) probably_damaging(0.98) TCGA-E2-A150-01 9 6554681 6554681 C T GLDC Missense_Mutation p.G768E 0.07 deleterious(0) probably_damaging(0.989) TCGA-E2-A150-01 X 102931122 102931122 C A MORF4L2 Silent p.V278V 0.19 TCGA-E2-A150-01 X 150573551 150573551 A G VMA21 3'UTR 0.23 TCGA-E2-A150-01 X 49065116 49065116 C T CACNA1F Missense_Mutation p.R1672H 0.27 tolerated(0.14) benign(0.004) TCGA-E2-A152-01 10 103892870 103892870 G A PPRC1 Silent p.P15P 0.25 TCGA-E2-A152-01 10 103892871 103892871 A T PPRC1 Missense_Mutation p.S16C 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-E2-A152-01 10 105965792 105965792 C G WDR96 Intron 0.31 TCGA-E2-A152-01 10 120863682 120863682 C G FAM45A Missense_Mutation p.Q10E 0.21 tolerated_low_confidence(0.14) benign(0.001) TCGA-E2-A152-01 10 127668745 127668745 C T FANK1 Missense_Mutation p.S10L 0.19 deleterious_low_confidence(0.02) benign(0.003) TCGA-E2-A152-01 10 75034278 75034278 A C TTC18 Nonsense_Mutation p.Y986* 0.19 TCGA-E2-A152-01 10 97392724 97392724 T A ALDH18A1 Missense_Mutation p.D267V 0.05 deleterious(0) probably_damaging(0.999) TCGA-E2-A152-01 11 126396470 126396470 C T KIRREL3 Silent p.K82K 0.05 TCGA-E2-A152-01 11 12785961 12785961 C G TEAD1 Nonsense_Mutation p.S61* 0.16 TCGA-E2-A152-01 11 22391723 22391723 G A SLC17A6 Missense_Mutation p.E344K 0.18 tolerated(0.39) benign(0.043) TCGA-E2-A152-01 11 47186849 47186849 G A ARFGAP2 3'UTR 0.31 TCGA-E2-A152-01 11 65997921 65997921 C T PACS1 Intron 0.16 TCGA-E2-A152-01 11 6807135 6807135 C G OR2AG1 Missense_Mutation p.I289M 0.26 deleterious(0) probably_damaging(0.91) TCGA-E2-A152-01 12 110939871 110939871 C T VPS29 5'UTR 0.15 TCGA-E2-A152-01 12 122685099 122685099 G A LRRC43 Silent p.V504V 0.21 TCGA-E2-A152-01 12 18891232 18891232 C G CAPZA3 Missense_Mutation p.D10E 0.12 tolerated(1) benign(0) TCGA-E2-A152-01 12 49086993 49086993 G C CCNT1 Silent p.L668L 0.15 TCGA-E2-A152-01 12 50355892 50355892 C G AQP5 Missense_Mutation p.S31W 0.24 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 12 50747708 50747708 C T FAM186A Silent p.Q969Q 0.30 TCGA-E2-A152-01 14 24836334 24836334 C G NFATC4 Missense_Mutation p.S25C 0.16 deleterious_low_confidence(0) benign(0.077) TCGA-E2-A152-01 14 24909407 24909407 C T SDR39U1 Missense_Mutation p.R255Q 0.45 tolerated(0.49) benign(0.005) TCGA-E2-A152-01 14 50319475 50319475 G A NEMF 5'UTR 0.08 TCGA-E2-A152-01 14 61789110 61789110 C A PRKCH Missense_Mutation p.F97L 0.15 tolerated(0.12) probably_damaging(0.992) TCGA-E2-A152-01 14 89091348 89091348 C T EML5 Missense_Mutation p.D1622N 0.20 tolerated(0.06) probably_damaging(0.919) TCGA-E2-A152-01 15 28769180 28769180 C T GOLGA8G Missense_Mutation p.G439E 0.23 deleterious(0.04) probably_damaging(0.982) TCGA-E2-A152-01 15 54793090 54793090 C T UNC13C Nonsense_Mutation p.Q1739* 0.28 TCGA-E2-A152-01 15 64792007 64792007 A G ZNF609 Missense_Mutation p.N130S 0.46 tolerated(0.89) benign(0.009) TCGA-E2-A152-01 15 67457304 67457304 G A SMAD3 Missense_Mutation p.R93Q 0.48 deleterious(0) probably_damaging(0.974) TCGA-E2-A152-01 15 78921439 78921439 G A CHRNB4 Missense_Mutation p.S403F 0.26 tolerated(0.54) possibly_damaging(0.526) TCGA-E2-A152-01 16 1488633 1488633 C T CCDC154 Missense_Mutation p.E347K 0.14 deleterious(0.03) benign(0.3) TCGA-E2-A152-01 16 20432609 20432609 G C ACSM5 Missense_Mutation p.R218T 0.07 deleterious(0.04) benign(0.016) TCGA-E2-A152-01 16 30409375 30409375 G A ZNF48 Silent p.P268P 0.17 TCGA-E2-A152-01 16 4638311 4638311 C G C16orf96 Silent p.L857L 0.20 TCGA-E2-A152-01 16 49660145 49660145 G C ZNF423 Missense_Mutation p.I1171M 0.03 deleterious(0) probably_damaging(0.998) TCGA-E2-A152-01 16 70569223 70569223 C T SF3B3 Missense_Mutation p.S242L 0.13 tolerated(0.14) benign(0.09) TCGA-E2-A152-01 16 88504833 88504833 C G ZNF469 Nonsense_Mutation p.S3624* 0.26 TCGA-E2-A152-01 16 88747605 88747605 G A SNAI3 Silent p.L198L 0.37 TCGA-E2-A152-01 17 21826428 21826428 G C FAM27L RNA 0.27 TCGA-E2-A152-01 17 39254032 39254032 G T KRTAP4-8 Missense_Mutation p.P102H 0.40 deleterious(0) unknown(0) TCGA-E2-A152-01 17 57043169 57043169 C G PPM1E Nonsense_Mutation p.S233* 0.26 TCGA-E2-A152-01 17 7359155 7359155 C A CHRNB1 Silent p.I420I 0.24 TCGA-E2-A152-01 17 7578536 7578536 T C TP53 Missense_Mutation p.K132E 0.49 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 18 45372102 45372102 A C SMAD2 Missense_Mutation p.F356C 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A152-01 18 51053085 51053085 G A DCC Missense_Mutation p.E1404K 0.47 deleterious(0.01) possibly_damaging(0.854) TCGA-E2-A152-01 19 11465585 11465585 C G CCDC159 3'UTR 0.41 TCGA-E2-A152-01 19 11473233 11473233 C G DKFZP761J1410 Silent p.V211V 0.48 TCGA-E2-A152-01 19 11488778 11488778 G A EPOR Missense_Mutation p.S470L 0.50 tolerated(0.36) benign(0.079) TCGA-E2-A152-01 19 12976890 12976890 C T MAST1 Missense_Mutation p.S668L 0.26 deleterious(0) possibly_damaging(0.448) TCGA-E2-A152-01 19 40328380 40328380 C T FBL Missense_Mutation p.R218Q 0.31 deleterious(0.02) possibly_damaging(0.858) TCGA-E2-A152-01 19 41117097 41117097 G T LTBP4 Missense_Mutation p.R684L 0.18 deleterious(0.05) possibly_damaging(0.807) TCGA-E2-A152-01 19 41944131 41944131 C T ATP5SL Silent p.E75E 0.14 TCGA-E2-A152-01 19 50193365 50193365 G A ADM5 Missense_Mutation p.R26Q 0.38 tolerated_low_confidence(0.28) benign(0.05) TCGA-E2-A152-01 19 50302177 50302177 C T AP2A1 Silent p.F311F 0.15 TCGA-E2-A152-01 19 52496081 52496081 C T ZNF615 3'UTR 0.37 TCGA-E2-A152-01 19 52825581 52825581 C T ZNF480 Nonsense_Mutation p.R360* 0.11 TCGA-E2-A152-01 19 55493529 55493529 G C NLRP2 Splice_Site p.X155_splice 0.14 TCGA-E2-A152-01 19 56735124 56735124 C G ZSCAN5A Missense_Mutation p.R155T 0.11 tolerated(0.57) benign(0.11) TCGA-E2-A152-01 19 57910499 57910499 G A ZNF548 Missense_Mutation p.E294K 0.04 tolerated(0.12) benign(0.019) TCGA-E2-A152-01 1 109445764 109445764 G A GPSM2 Missense_Mutation p.A324T 0.38 deleterious(0.02) possibly_damaging(0.869) TCGA-E2-A152-01 1 145508273 145508273 G T RBM8A Missense_Mutation p.G65V 0.33 deleterious(0) probably_damaging(0.972) TCGA-E2-A152-01 1 149937782 149937782 C T OTUD7B Missense_Mutation p.S175N 0.14 tolerated(0.53) benign(0.001) TCGA-E2-A152-01 1 153085068 153085068 G A SPRR2F Nonsense_Mutation p.Q48* 0.34 TCGA-E2-A152-01 1 155165801 155165801 G C THBS3 Missense_Mutation p.S930C 0.15 deleterious(0) probably_damaging(0.998) TCGA-E2-A152-01 1 156567909 156567909 C A GPATCH4 Missense_Mutation p.G89V 0.31 deleterious(0) probably_damaging(0.965) TCGA-E2-A152-01 1 158812198 158812198 G C MNDA Missense_Mutation p.E85D 0.17 deleterious(0.02) possibly_damaging(0.551) TCGA-E2-A152-01 1 16719813 16719813 G C SZRD1 Missense_Mutation p.K64N 0.17 deleterious(0) probably_damaging(0.998) TCGA-E2-A152-01 1 176564678 176564678 C A PAPPA2 Missense_Mutation p.D646E 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-E2-A152-01 1 207498997 207498997 G A CD55 Missense_Mutation p.R170Q 0.15 tolerated(0.56) benign(0.003) TCGA-E2-A152-01 1 21175934 21175934 C T EIF4G3 Missense_Mutation p.E1238K 0.23 deleterious(0) probably_damaging(0.997) TCGA-E2-A152-01 1 230503782 230503782 G C PGBD5 Intron 0.14 TCGA-E2-A152-01 1 248737415 248737415 G T OR2T34 Missense_Mutation p.P215H 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 1 29587268 29587268 G A PTPRU Missense_Mutation p.E333K 0.20 deleterious(0) possibly_damaging(0.881) TCGA-E2-A152-01 1 9022689 9022689 C T CA6 Missense_Mutation p.S182F 0.19 deleterious(0) probably_damaging(0.936) TCGA-E2-A152-01 1 99150448 99150448 C G SNX7 Nonsense_Mutation p.S63* 0.19 TCGA-E2-A152-01 20 22564859 22564859 C T FOXA2 Missense_Mutation p.D20N 0.08 deleterious(0) probably_damaging(0.99) TCGA-E2-A152-01 20 25303958 25303958 C G ABHD12 Intron 0.10 TCGA-E2-A152-01 20 25303983 25303983 C T ABHD12 Missense_Mutation p.E134K 0.12 tolerated(0.16) benign(0.164) TCGA-E2-A152-01 20 25304028 25304028 C T ABHD12 Missense_Mutation p.D119N 0.11 tolerated(0.23) possibly_damaging(0.56) TCGA-E2-A152-01 20 44141314 44141314 C A SPINT3 Nonsense_Mutation p.E83* 0.18 TCGA-E2-A152-01 20 48699337 48699337 G A UBE2V1 Nonsense_Mutation p.Q161* 0.14 TCGA-E2-A152-01 20 61940776 61940776 C T COL20A1 Silent p.L344L 0.25 TCGA-E2-A152-01 20 62421337 62421337 C G ZBTB46 Missense_Mutation p.Q258H 0.17 deleterious(0.02) possibly_damaging(0.615) TCGA-E2-A152-01 20 62421476 62421476 G T ZBTB46 Missense_Mutation p.S212Y 0.16 deleterious(0.01) possibly_damaging(0.707) TCGA-E2-A152-01 22 24086282 24086282 G A ZNF70 Missense_Mutation p.S349F 0.09 deleterious(0) possibly_damaging(0.768) TCGA-E2-A152-01 22 26694977 26694977 G A SEZ6L Missense_Mutation p.R397H 0.07 deleterious(0.03) benign(0.12) TCGA-E2-A152-01 22 28315101 28315101 C G PITPNB Intron 0.09 TCGA-E2-A152-01 22 38541572 38541572 G C PLA2G6 Missense_Mutation p.Q100E 0.12 tolerated(0.87) benign(0.04) TCGA-E2-A152-01 22 50728951 50728951 C T PLXNB2 Silent p.R21R 0.17 TCGA-E2-A152-01 2 10050972 10050972 G A TAF1B Missense_Mutation p.D355N 0.15 deleterious(0) probably_damaging(0.984) TCGA-E2-A152-01 2 105858889 105858889 G A GPR45 Missense_Mutation p.D192N 0.13 tolerated(0.49) benign(0.001) TCGA-E2-A152-01 2 113676141 113676141 G C IL37 Missense_Mutation p.E138Q 0.19 tolerated(0.06) benign(0.004) TCGA-E2-A152-01 2 137814238 137814238 G C THSD7B Missense_Mutation p.E130Q 0.25 tolerated(0.13) possibly_damaging(0.504) TCGA-E2-A152-01 2 152322549 152322549 C T RIF1 Missense_Mutation p.S2172F 0.22 deleterious(0) probably_damaging(0.999) TCGA-E2-A152-01 2 228476365 228476365 A G C2orf83 Silent p.S66S 0.18 TCGA-E2-A152-01 2 55194347 55194347 G C EML6 Intron 0.10 TCGA-E2-A152-01 2 75280858 75280858 C A TACR1 Silent p.L203L 0.20 TCGA-E2-A152-01 2 90199146 90199146 G A IGKV1D-12 Missense_Mutation p.E103K 0.18 deleterious(0.01) possibly_damaging(0.709) TCGA-E2-A152-01 3 119327722 119327722 A T PLA1A Silent p.G127G 0.19 TCGA-E2-A152-01 3 122628878 122628878 G A SEMA5B 3'UTR 0.11 TCGA-E2-A152-01 3 123419644 123419644 C G MYLK Missense_Mutation p.E891Q 0.22 deleterious(0.01) benign(0.042) TCGA-E2-A152-01 3 142103472 142103472 G A XRN1 Nonsense_Mutation p.Q799* 0.04 TCGA-E2-A152-01 3 150127372 150127372 G C TSC22D2 Missense_Mutation p.E79Q 0.28 tolerated(0.07) benign(0.365) TCGA-E2-A152-01 3 164758732 164758732 G A SI Missense_Mutation p.H719Y 0.08 deleterious(0.04) benign(0.042) TCGA-E2-A152-01 3 178941973 178941973 C T PIK3CA Silent p.L764L 0.15 TCGA-E2-A152-01 3 47951254 47951254 C A MAP4 Intron 0.56 TCGA-E2-A152-01 3 49831147 49831147 G A CDHR4 Missense_Mutation p.H498Y 0.28 tolerated(0.43) benign(0.015) TCGA-E2-A152-01 3 93783283 93783283 G C NSUN3 Silent p.L5L 0.13 TCGA-E2-A152-01 4 103590198 103590198 C G MANBA Missense_Mutation p.Q413H 0.19 tolerated(0.08) probably_damaging(0.929) TCGA-E2-A152-01 4 123230553 123230553 G T KIAA1109 Missense_Mutation p.D3396Y 0.18 possibly_damaging(0.851) TCGA-E2-A152-01 4 13579099 13579099 C G BOD1L1 Missense_Mutation p.E2938Q 0.15 possibly_damaging(0.697) TCGA-E2-A152-01 4 138451370 138451370 C T PCDH18 Missense_Mutation p.E625K 0.17 deleterious(0.01) possibly_damaging(0.902) TCGA-E2-A152-01 4 145567732 145567732 G T HHIP 5'UTR 0.29 TCGA-E2-A152-01 4 155463426 155463426 G C PLRG1 Missense_Mutation p.I200M 0.07 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 4 173961139 173961141 AGA - GALNTL6 In_Frame_Del p.K567del 0.17 TCGA-E2-A152-01 4 69681927 69681927 G C UGT2B10 Missense_Mutation p.D64H 0.17 deleterious(0) benign(0.213) TCGA-E2-A152-01 4 77304840 77304840 G C CCDC158 Missense_Mutation p.L260V 0.13 deleterious(0.04) probably_damaging(0.979) TCGA-E2-A152-01 4 77476816 77476816 G A SHROOM3 Missense_Mutation p.E75K 0.35 deleterious(0) possibly_damaging(0.681) TCGA-E2-A152-01 4 77676338 77676338 C T SHROOM3 Missense_Mutation p.R1568C 0.21 tolerated(0.21) benign(0.001) TCGA-E2-A152-01 4 88415072 88415072 G A SPARCL1 Nonsense_Mutation p.Q294* 0.19 TCGA-E2-A152-01 5 140724883 140724883 G T PCDHGA3 Missense_Mutation p.G428V 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-E2-A152-01 5 14477043 14477043 G A TRIO Missense_Mutation p.E2042K 0.13 probably_damaging(0.998) TCGA-E2-A152-01 5 149206414 149206414 C T PPARGC1B Missense_Mutation p.S144L 0.12 tolerated(0.53) benign(0) TCGA-E2-A152-01 5 167850837 167850837 C T WWC1 Missense_Mutation p.S525F 0.07 deleterious(0.01) probably_damaging(0.924) TCGA-E2-A152-01 5 171639034 171639034 G A UBTD2 Missense_Mutation p.R169C 0.19 tolerated(0.19) probably_damaging(0.998) TCGA-E2-A152-01 5 33459816 33459816 G A TARS Missense_Mutation p.R400K 0.25 deleterious(0) possibly_damaging(0.816) TCGA-E2-A152-01 5 38944601 38944601 G C RICTOR Silent p.V1620V 0.13 TCGA-E2-A152-01 5 52366060 52366060 G C ITGA2 Missense_Mutation p.Q735H 0.37 tolerated(0.09) possibly_damaging(0.456) TCGA-E2-A152-01 5 54563060 54563060 C G DHX29 Splice_Site p.X1144_splice 0.12 TCGA-E2-A152-01 5 65054455 65054455 C T NLN Nonsense_Mutation p.Q35* 0.04 TCGA-E2-A152-01 5 666230 666230 G A TPPP Missense_Mutation p.S107F 0.15 deleterious(0) possibly_damaging(0.781) TCGA-E2-A152-01 6 110944522 110944522 C A CDK19 Missense_Mutation p.V302F 0.18 tolerated(0.15) benign(0.25) TCGA-E2-A152-01 6 116720364 116720364 C A DSE 5'UTR 0.17 TCGA-E2-A152-01 6 142468422 142468422 G C VTA1 5'UTR 0.23 TCGA-E2-A152-01 6 26123904 26123904 C A HIST1H2BC Nonsense_Mutation p.E77* 0.18 TCGA-E2-A152-01 6 26199108 26199108 C G HIST1H2AD Missense_Mutation p.E122Q 0.15 tolerated_low_confidence(0.06) benign(0.002) TCGA-E2-A152-01 6 26413383 26413383 C G BTN3A1 Intron 0.18 TCGA-E2-A152-01 6 27107360 27107360 C G HIST1H4I Silent p.L91L 0.19 TCGA-E2-A152-01 6 3081330 3081330 G A RIPK1 Missense_Mutation p.D147N 0.13 deleterious(0.03) probably_damaging(0.979) TCGA-E2-A152-01 6 65531584 65531584 G A EYS Missense_Mutation p.S1066L 0.32 tolerated(0.69) possibly_damaging(0.895) TCGA-E2-A152-01 6 75814970 75814970 G A COL12A1 Silent p.C2739C 0.17 TCGA-E2-A152-01 6 75892984 75892984 C G COL12A1 Missense_Mutation p.R558T 0.17 benign(0.16) TCGA-E2-A152-01 7 100681335 100681335 C T MUC17 Missense_Mutation p.S2213L 0.18 unknown(0) TCGA-E2-A152-01 7 100683508 100683508 C T MUC17 Silent p.T2937T 0.18 TCGA-E2-A152-01 7 102614072 102614072 C T FBXL13 Intron 0.04 TCGA-E2-A152-01 7 130364154 130364154 G C TSGA13 Missense_Mutation p.Q76E 0.16 tolerated(0.17) benign(0.092) TCGA-E2-A152-01 7 134672706 134672706 G A AGBL3 Missense_Mutation p.E8K 0.14 deleterious(0) benign(0.209) TCGA-E2-A152-01 7 135272700 135272700 C G NUP205 Missense_Mutation p.S478C 0.15 deleterious(0.01) possibly_damaging(0.855) TCGA-E2-A152-01 7 142836690 142836690 C G PIP Missense_Mutation p.I132M 0.20 tolerated(0.07) benign(0.003) TCGA-E2-A152-01 7 143453587 143453587 C T CTAGE6 Missense_Mutation p.E389K 0.08 deleterious(0.02) possibly_damaging(0.814) TCGA-E2-A152-01 7 148767652 148767652 C T ZNF786 Missense_Mutation p.G738R 0.36 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 7 20198009 20198009 C T MACC1 Missense_Mutation p.E659K 0.15 deleterious(0.02) possibly_damaging(0.824) TCGA-E2-A152-01 7 30088947 30088947 C G PLEKHA8 Silent p.L182L 0.21 TCGA-E2-A152-01 7 39125579 39125579 G A POU6F2 Silent p.L46L 0.32 TCGA-E2-A152-01 7 73511431 73511431 C T LIMK1 Missense_Mutation p.H105Y 0.18 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 8 3057296 3057296 G A CSMD1 Silent p.L1712L 0.27 TCGA-E2-A152-01 9 104499593 104499593 G A GRIN3A Silent p.I223I 0.13 TCGA-E2-A152-01 9 108234383 108234383 C G FSD1L Intron 0.13 TCGA-E2-A152-01 9 109689136 109689136 G A ZNF462 Silent p.L981L 0.21 TCGA-E2-A152-01 9 136595296 136595296 C T SARDH Missense_Mutation p.C235Y 0.17 deleterious(0) probably_damaging(0.954) TCGA-E2-A152-01 9 139633881 139633881 C T LCN6 3'Flank 0.15 TCGA-E2-A152-01 9 14851512 14851512 C G FREM1 Missense_Mutation p.D308H 0.19 deleterious(0) probably_damaging(0.999) TCGA-E2-A152-01 9 84607526 84607526 G A SPATA31D1 Missense_Mutation p.R714H 0.36 tolerated(0.14) benign(0.005) TCGA-E2-A152-01 9 95482669 95482669 G A BICD2 Silent p.L325L 0.14 TCGA-E2-A152-01 9 98268846 98268846 C T PTCH1 Silent p.L79L 0.10 TCGA-E2-A152-01 X 105188021 105188021 C A NRK Missense_Mutation p.S1350R 0.03 tolerated(0.09) benign(0.295) TCGA-E2-A152-01 X 107301404 107301404 C T VSIG1 Silent p.F62F 0.17 TCGA-E2-A152-01 X 108647579 108647579 A G GUCY2F Silent p.S701S 0.04 TCGA-E2-A152-01 X 151808900 151808900 G A GABRQ Missense_Mutation p.D71N 0.18 deleterious(0) probably_damaging(1) TCGA-E2-A152-01 X 69478551 69478551 G C P2RY4 Silent p.L308L 0.30 TCGA-E2-A152-01 X 73962903 73962903 C G KIAA2022 Missense_Mutation p.D497H 0.14 deleterious(0) probably_damaging(0.998) TCGA-E2-A152-01 X 77289220 77289220 G A ATP7A Missense_Mutation p.E1138K 0.29 tolerated(0.17) possibly_damaging(0.738) TCGA-E2-A152-01 X 80371738 80371738 C A HMGN5 Nonsense_Mutation p.E78* 0.13 TCGA-E2-A153-01 10 98129947 98129947 C T TLL2 Missense_Mutation p.G930S 0.20 tolerated(0.27) benign(0.219) TCGA-E2-A153-01 11 34492955 34492955 C T CAT Missense_Mutation p.A520V 0.33 tolerated_low_confidence(0.11) benign(0.003) TCGA-E2-A153-01 11 68355449 68355455 GGCTTCA - PPP6R3 Frame_Shift_Del p.G563Tfs*113 0.09 TCGA-E2-A153-01 12 40044140 40044140 T G C12orf40 Missense_Mutation p.F224V 0.20 deleterious(0.02) benign(0.184) TCGA-E2-A153-01 14 61444282 61444282 G A TRMT5 Nonsense_Mutation p.R248* 0.26 TCGA-E2-A153-01 15 42115928 42115928 C T MAPKBP1 Silent p.I1300I 0.18 TCGA-E2-A153-01 15 79585975 79585975 C T ANKRD34C Missense_Mutation p.R117C 0.41 deleterious(0.01) possibly_damaging(0.857) TCGA-E2-A153-01 16 67070600 67070601 GA - CBFB Frame_Shift_Del p.E76Tfs*6 0.53 TCGA-E2-A153-01 16 67685827 67685827 C T RLTPR Silent p.D864D 0.41 TCGA-E2-A153-01 1 115454161 115454161 C T SYCP1 Missense_Mutation p.S496L 0.28 tolerated(0.12) benign(0.058) TCGA-E2-A153-01 1 168215182 168215182 G A SFT2D2 3'UTR 0.08 TCGA-E2-A153-01 1 29189416 29189416 C T OPRD1 Missense_Mutation p.S247L 0.37 deleterious(0.01) probably_damaging(0.938) TCGA-E2-A153-01 1 45316548 45316548 C T EIF2B3 3'UTR 0.30 TCGA-E2-A153-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-E2-A153-01 4 66201815 66201815 C T EPHA5 Missense_Mutation p.R896H 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-E2-A153-01 5 114620509 114620509 G A CCDC112 Missense_Mutation p.R72C 0.30 deleterious(0.01) benign(0.344) TCGA-E2-A153-01 5 160753392 160753392 C A GABRB2 Missense_Mutation p.D392Y 0.29 deleterious(0.04) benign(0.003) TCGA-E2-A153-01 5 32233993 32233993 G C MTMR12 Silent p.T520T 0.21 TCGA-E2-A153-01 5 36953818 36953818 A T NIPBL Missense_Mutation p.H7L 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-E2-A153-01 6 131222136 131222136 C T EPB41L2 Missense_Mutation p.E372K 0.06 deleterious(0) probably_damaging(0.982) TCGA-E2-A153-01 6 49416584 49416584 T C MUT Missense_Mutation p.I463M 0.29 tolerated_low_confidence(0.76) benign(0.012) TCGA-E2-A153-01 6 83667047 83667047 C T UBE3D Missense_Mutation p.R378H 0.22 tolerated(0.55) benign(0) TCGA-E2-A153-01 7 151859211 151859217 AGCTGGG - KMT2C Frame_Shift_Del p.N3815Kfs*72 0.21 TCGA-E2-A153-01 8 133141532 133141532 T C KCNQ3 Missense_Mutation p.T866A 0.20 tolerated_low_confidence(0.1) probably_damaging(0.944) TCGA-E2-A153-01 8 2020570 2020570 C T MYOM2 Silent p.R313R 0.13 TCGA-E2-A153-01 9 112219622 112219622 C T PTPN3 Missense_Mutation p.E66K 0.03 deleterious(0) probably_damaging(1) TCGA-E2-A153-01 9 136508616 136508616 G A DBH Missense_Mutation p.V276I 0.18 tolerated(0.65) benign(0.032) TCGA-E2-A153-01 9 140952286 140952286 G A CACNA1B Silent p.T1357T 0.28 TCGA-E2-A153-01 X 47326822 47326822 C A ZNF41 Missense_Mutation p.G20V 0.22 tolerated(0.06) benign(0) TCGA-E2-A154-01 10 60994219 60994230 AACAAGAAAGAG - PHYHIPL In_Frame_Del p.K90_K93del 0.23 TCGA-E2-A154-01 10 76818229 76818229 G T DUPD1 Nonsense_Mutation p.S15* 0.19 TCGA-E2-A154-01 10 98816176 98816176 G T SLIT1 Missense_Mutation p.F401L 0.45 deleterious(0) probably_damaging(0.997) TCGA-E2-A154-01 11 133826664 133826664 A C IGSF9B 5'UTR 0.20 TCGA-E2-A154-01 11 320790 320790 G T IFITM3 Missense_Mutation p.F8L 0.22 tolerated(0.1) benign(0.005) TCGA-E2-A154-01 11 56000198 56000198 G A OR5T2 Missense_Mutation p.A155V 0.22 deleterious(0.01) possibly_damaging(0.45) TCGA-E2-A154-01 11 56431680 56431680 C T OR5AR1 Silent p.I173I 0.25 TCGA-E2-A154-01 11 64534720 64534720 T G SF1 Missense_Mutation p.Q574P 0.29 deleterious_low_confidence(0.01) benign(0.293) TCGA-E2-A154-01 12 53201529 53201529 C T KRT4 Silent p.L415L 0.06 TCGA-E2-A154-01 12 66641568 66641568 T G IRAK3 Missense_Mutation p.F470V 0.53 tolerated(0.05) possibly_damaging(0.834) TCGA-E2-A154-01 13 100518535 100518535 C T CLYBL Missense_Mutation p.R226W 0.44 deleterious(0) probably_damaging(1) TCGA-E2-A154-01 13 77595895 77595895 C G FBXL3 Missense_Mutation p.C34S 0.14 tolerated_low_confidence(0.32) benign(0) TCGA-E2-A154-01 14 106805400 106805400 A T IGHV4-31 Missense_Mutation p.W55R 0.45 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-E2-A154-01 14 21859709 21859709 C A CHD8 Silent p.L2326L 0.16 TCGA-E2-A154-01 14 23848056 23848056 G T CMTM5 Intron 0.47 TCGA-E2-A154-01 16 16418937 16418937 G T PKD1P1 RNA 0.27 TCGA-E2-A154-01 16 21854855 21854855 G A NPIPB4 Nonsense_Mutation p.R133* 0.14 TCGA-E2-A154-01 16 57794297 57794297 G A KIFC3 Missense_Mutation p.T755M 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A154-01 16 7645563 7645563 G A RBFOX1 Missense_Mutation p.V181I 0.09 deleterious(0.01) possibly_damaging(0.745) TCGA-E2-A154-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.67 TCGA-E2-A154-01 19 42862378 42862378 G A MEGF8 Silent p.L1631L 0.14 TCGA-E2-A154-01 19 46457123 46457123 C T NOVA2 Missense_Mutation p.R104Q 0.56 deleterious(0.02) unknown(0) TCGA-E2-A154-01 19 5744496 5744496 C T CATSPERD Missense_Mutation p.A211V 0.49 deleterious(0) benign(0.346) TCGA-E2-A154-01 1 153270481 153270481 C A PGLYRP3 Missense_Mutation p.G326V 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A154-01 1 161600164 161600164 G T FCGR3B Silent p.R55R 0.31 TCGA-E2-A154-01 1 170695377 170695377 G A PRRX1 Missense_Mutation p.R145Q 0.37 deleterious(0) probably_damaging(0.986) TCGA-E2-A154-01 1 211751745 211751745 G A SLC30A1 Silent p.N70N 0.11 TCGA-E2-A154-01 1 247654805 247654805 G A OR2W5 RNA 0.43 TCGA-E2-A154-01 20 32267640 32267640 G A E2F1 Missense_Mutation p.R165W 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A154-01 20 56138776 56138776 C T PCK1 Silent p.D318D 0.05 TCGA-E2-A154-01 21 36206729 36206736 AGGGTTAA - RUNX1 Frame_Shift_Del p.F259Sfs*338 0.30 TCGA-E2-A154-01 21 47360065 47360065 C T PCBP3 Missense_Mutation p.T344M 0.05 deleterious(0.01) probably_damaging(0.953) TCGA-E2-A154-01 2 190428591 190428591 A C SLC40A1 Missense_Mutation p.L374R 0.43 deleterious(0) possibly_damaging(0.472) TCGA-E2-A154-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.51 tolerated(0.44) benign(0.085) TCGA-E2-A154-01 3 197349102 197349102 C A AC024560.3 RNA 0.41 TCGA-E2-A154-01 3 44970922 44970922 C T ZDHHC3 Missense_Mutation p.S234N 0.08 deleterious(0) probably_damaging(0.967) TCGA-E2-A154-01 4 159644428 159644428 A C PPID Missense_Mutation p.S5A 0.29 tolerated_low_confidence(0.4) benign(0.002) TCGA-E2-A154-01 5 140764680 140764680 G A PCDHGA7 Silent p.S738S 0.47 TCGA-E2-A154-01 5 7690927 7690927 T A ADCY2 Missense_Mutation p.Y282N 0.09 deleterious(0) probably_damaging(0.988) TCGA-E2-A154-01 6 11103979 11103979 G T ERVFRD-1 Missense_Mutation p.T522K 0.39 tolerated_low_confidence(0.32) benign(0.003) TCGA-E2-A154-01 6 27775645 27775645 C A HIST1H2BL Missense_Mutation p.G14C 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-E2-A154-01 6 31896624 31896624 G A CFB Intron 0.50 TCGA-E2-A154-01 6 52380908 52380908 G A TRAM2 Missense_Mutation p.R103W 0.08 deleterious(0) probably_damaging(1) TCGA-E2-A154-01 6 87796031 87796031 C T CGA Silent p.T70T 0.37 TCGA-E2-A154-01 7 100456724 100456724 C T SLC12A9 Silent p.V306V 0.10 TCGA-E2-A154-01 7 31735224 31735224 C A PPP1R17 Missense_Mutation p.P75H 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A154-01 7 56066816 56066816 C T GBAS 3'UTR 0.21 TCGA-E2-A154-01 8 100883111 100883111 G A VPS13B Missense_Mutation p.V3856I 0.35 tolerated(0.06) benign(0.097) TCGA-E2-A154-01 8 124664638 124664638 C T KLHL38 Missense_Mutation p.A177T 0.45 tolerated(0.15) benign(0.155) TCGA-E2-A154-01 8 145649475 145649475 C T VPS28 Missense_Mutation p.R166H 0.47 deleterious(0) possibly_damaging(0.807) TCGA-E2-A154-01 8 27402058 27402058 G A EPHX2 3'UTR 0.49 TCGA-E2-A154-01 8 55533917 55533917 C T RP1 Missense_Mutation p.R131W 0.60 deleterious(0) probably_damaging(0.988) TCGA-E2-A154-01 9 135763881 135763881 G A C9orf9 Intron 0.20 TCGA-E2-A154-01 9 70993224 70993224 G T PGM5 Missense_Mutation p.C124F 0.16 deleterious(0) benign(0.393) TCGA-E2-A154-01 9 86912924 86912924 C G SLC28A3 Missense_Mutation p.R227T 0.15 deleterious(0) probably_damaging(0.981) TCGA-E2-A154-01 X 119005097 119005097 C A RNF113A Missense_Mutation p.Q160H 0.13 tolerated(0.2) benign(0.002) TCGA-E2-A154-01 X 128692644 128692644 G T OCRL Missense_Mutation p.M158I 0.40 tolerated(0.2) benign(0) TCGA-E2-A154-01 X 31152232 31152232 G T DMD Missense_Mutation p.F3667L 0.32 benign(0.294) TCGA-E2-A154-01 X 47065655 47065655 A T UBA1 Missense_Mutation p.M584L 0.51 tolerated(0.08) possibly_damaging(0.517) TCGA-E2-A154-01 X 50037884 50037884 C G CCNB3 Missense_Mutation p.Q76E 0.49 deleterious(0.02) benign(0.023) TCGA-E2-A154-01 X 53439174 53439174 C T SMC1A Missense_Mutation p.R295Q 0.37 deleterious(0.03) benign(0.216) TCGA-E2-A155-01 10 13325695 13325695 G T PHYH Silent p.R275R 0.40 TCGA-E2-A155-01 10 8111501 8111502 - A GATA3 Frame_Shift_Ins p.R331Kfs*22 0.40 TCGA-E2-A155-01 11 16816136 16816136 A G PLEKHA7 Missense_Mutation p.F882L 0.05 tolerated(0.54) benign(0.016) TCGA-E2-A155-01 11 18301406 18301406 A G HPS5 3'UTR 0.38 TCGA-E2-A155-01 11 700171 700171 T C TMEM80 Silent p.F48F 0.38 TCGA-E2-A155-01 12 114380175 114380175 C T RBM19 Missense_Mutation p.R564Q 0.28 deleterious(0.03) possibly_damaging(0.701) TCGA-E2-A155-01 12 22677465 22677465 C T C2CD5 Missense_Mutation p.R181Q 0.70 deleterious(0.01) benign(0.17) TCGA-E2-A155-01 12 90015519 90015519 G T ATP2B1 Missense_Mutation p.T465N 0.24 deleterious(0) probably_damaging(0.998) TCGA-E2-A155-01 12 90015552 90015552 T C ATP2B1 Missense_Mutation p.N454S 0.25 deleterious(0) probably_damaging(0.994) TCGA-E2-A155-01 13 111545325 111545325 T A ANKRD10 Intron 0.68 TCGA-E2-A155-01 14 105965157 105965157 G T C14orf80 Silent p.T385T 0.54 TCGA-E2-A155-01 14 106622007 106622007 C A IGHV3-16 Missense_Mutation p.V80L 0.76 deleterious_low_confidence(0.02) benign(0.003) TCGA-E2-A155-01 14 20665593 20665593 G A OR11G2 Silent p.R33R 0.64 TCGA-E2-A155-01 15 102346146 102346146 C T OR4F6 Missense_Mutation p.S75F 0.24 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-E2-A155-01 15 102346200 102346200 C G OR4F6 Missense_Mutation p.S93C 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-E2-A155-01 15 102346324 102346324 C T OR4F6 Silent p.T134T 0.28 TCGA-E2-A155-01 15 102358597 102358597 G A OR4F15 Missense_Mutation p.D70N 0.44 deleterious_low_confidence(0.01) benign(0.32) TCGA-E2-A155-01 15 20489417 20489417 C T CHEK2P2 RNA 0.10 TCGA-E2-A155-01 15 24921813 24921813 G T NPAP1 Missense_Mutation p.V267F 0.35 tolerated(0.13) benign(0.346) TCGA-E2-A155-01 15 43122137 43122137 G A TTBK2 Missense_Mutation p.P144L 0.45 deleterious(0.01) probably_damaging(1) TCGA-E2-A155-01 15 89020270 89020270 G A MRPS11 Silent p.L154L 0.40 TCGA-E2-A155-01 16 31092215 31092215 C T ZNF646 Nonsense_Mutation p.Q1524* 0.48 TCGA-E2-A155-01 16 3486606 3486606 C A ZNF597 Nonsense_Mutation p.E365* 0.39 TCGA-E2-A155-01 16 708527 708527 G A WDR90 Silent p.L923L 0.45 TCGA-E2-A155-01 17 27380585 27380585 G A PIPOX Missense_Mutation p.R211H 0.45 tolerated(0.13) benign(0.035) TCGA-E2-A155-01 17 57057854 57057854 C T PPM1E Missense_Mutation p.A577V 0.16 deleterious_low_confidence(0.04) benign(0.311) TCGA-E2-A155-01 17 64875098 64875098 C T CACNG5 Missense_Mutation p.R69W 0.17 deleterious(0) possibly_damaging(0.512) TCGA-E2-A155-01 17 7579591 7579591 C G TP53 Splice_Site p.X33_splice 0.82 TCGA-E2-A155-01 17 76831512 76831512 G A USP36 Nonsense_Mutation p.R109* 0.39 TCGA-E2-A155-01 18 28654837 28654837 A G DSC2 Missense_Mutation p.L567P 0.40 deleterious(0) probably_damaging(0.981) TCGA-E2-A155-01 18 77659086 77659086 T C KCNG2 Missense_Mutation p.V224A 0.33 deleterious(0) possibly_damaging(0.816) TCGA-E2-A155-01 19 14015697 14015697 C A C19orf57 Missense_Mutation p.K3N 0.44 tolerated(0.13) benign(0.031) TCGA-E2-A155-01 19 36211899 36211899 C - KMT2B Frame_Shift_Del p.K553Nfs*52 0.44 TCGA-E2-A155-01 19 38229370 38229370 G T ZNF573 3'UTR 0.45 TCGA-E2-A155-01 19 43233453 43233453 G A PSG3 Silent p.F355F 0.40 TCGA-E2-A155-01 19 46825069 46825069 C T HIF3A Missense_Mutation p.P394L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-E2-A155-01 19 5866890 5866890 C T FUT5 Missense_Mutation p.V283M 0.39 deleterious(0) possibly_damaging(0.885) TCGA-E2-A155-01 1 144220855 144220855 C T NBPF8 Missense_Mutation p.S3592L 0.13 probably_damaging(0.972) TCGA-E2-A155-01 1 149939428 149939428 C A OTUD7B Missense_Mutation p.G98V 0.48 deleterious(0) probably_damaging(1) TCGA-E2-A155-01 1 156907126 156907126 C T ARHGEF11 Missense_Mutation p.R1452H 0.33 tolerated_low_confidence(0.7) benign(0.001) TCGA-E2-A155-01 1 157737500 157737500 G A FCRL2 Intron 0.47 TCGA-E2-A155-01 1 158225973 158225973 C T CD1A Nonsense_Mutation p.Q169* 0.38 TCGA-E2-A155-01 1 193045697 193045697 G T TROVE2 Missense_Mutation p.A290S 0.42 tolerated(0.65) benign(0.08) TCGA-E2-A155-01 1 204214761 204214761 C T PLEKHA6 Missense_Mutation p.D672N 0.46 tolerated(0.24) benign(0.008) TCGA-E2-A155-01 1 237863760 237863760 C G RYR2 Missense_Mutation p.D3120E 0.39 possibly_damaging(0.75) TCGA-E2-A155-01 1 41006377 41006377 C T ZNF684 Silent p.I45I 0.35 TCGA-E2-A155-01 1 67206375 67206375 C A SGIP1 Missense_Mutation p.P757T 0.41 tolerated(0.23) benign(0.02) TCGA-E2-A155-01 20 52193283 52193283 A G ZNF217 Missense_Mutation p.C674R 0.42 tolerated(0.35) benign(0.082) TCGA-E2-A155-01 22 32479101 32479101 G A SLC5A1 Silent p.T208T 0.38 TCGA-E2-A155-01 22 39388678 39388678 C A APOBEC3B 3'UTR 0.45 TCGA-E2-A155-01 2 200137283 200137283 C T SATB2 Missense_Mutation p.R618H 0.47 deleterious(0) probably_damaging(0.997) TCGA-E2-A155-01 2 216209567 216209568 CT - ATIC Frame_Shift_Del p.S432Cfs*29 0.40 TCGA-E2-A155-01 2 219000723 219000723 G T CXCR2 3'UTR 0.45 TCGA-E2-A155-01 2 220102662 220102662 C T GLB1L Silent p.V453V 0.27 TCGA-E2-A155-01 2 32476278 32476278 G A NLRC4 Nonsense_Mutation p.Q219* 0.35 TCGA-E2-A155-01 3 127800192 127800192 G A RUVBL1 Silent p.S424S 0.37 TCGA-E2-A155-01 3 142176483 142176483 T C ATR Missense_Mutation p.M2540V 0.39 deleterious(0.01) benign(0.01) TCGA-E2-A155-01 3 175042047 175042047 C G NAALADL2 Missense_Mutation p.S341R 0.41 tolerated(0.42) benign(0.235) TCGA-E2-A155-01 3 185990120 185990120 G C DGKG Missense_Mutation p.T308S 0.43 deleterious(0.01) possibly_damaging(0.73) TCGA-E2-A155-01 3 97614915 97614915 C T CRYBG3 Missense_Mutation p.R615W 0.34 deleterious(0) probably_damaging(0.997) TCGA-E2-A155-01 4 170912804 170912804 C T MFAP3L Missense_Mutation p.V319M 0.42 deleterious(0) probably_damaging(0.993) TCGA-E2-A155-01 4 3234979 3234979 C T HTT Silent p.G2785G 0.29 TCGA-E2-A155-01 4 5837643 5837643 G A CRMP1 Missense_Mutation p.S541L 0.40 tolerated(0.71) possibly_damaging(0.866) TCGA-E2-A155-01 4 6711321 6711321 A G MRFAP1L1 Silent p.P12P 0.30 TCGA-E2-A155-01 4 76861401 76861401 A T NAAA Intron 0.60 TCGA-E2-A155-01 4 87746702 87746702 C G SLC10A6 Missense_Mutation p.A264P 0.06 tolerated(0.12) benign(0.128) TCGA-E2-A155-01 4 87797586 87797586 C T RP11-397E7.2 RNA 0.04 TCGA-E2-A155-01 5 102432359 102432359 C G GIN1 Missense_Mutation p.D394H 0.71 deleterious(0) probably_damaging(0.947) TCGA-E2-A155-01 5 141005299 141005299 G A HDAC3 Missense_Mutation p.L338F 0.67 deleterious(0) probably_damaging(1) TCGA-E2-A155-01 5 172517553 172517553 C G CREBRF Missense_Mutation p.S124C 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E2-A155-01 5 182340 182340 G T PLEKHG4B Nonsense_Mutation p.E1240* 0.23 TCGA-E2-A155-01 5 79028598 79028598 C T CMYA5 Missense_Mutation p.S1337L 0.76 possibly_damaging(0.879) TCGA-E2-A155-01 6 107566769 107566769 C T PDSS2 Missense_Mutation p.E229K 0.04 tolerated(0.11) benign(0.41) TCGA-E2-A155-01 6 123851667 123851667 C A TRDN Missense_Mutation p.R156S 0.18 deleterious_low_confidence(0) unknown(0) TCGA-E2-A155-01 7 76943704 76943704 A G GSAP Missense_Mutation p.V731A 0.26 tolerated(0.09) benign(0.297) TCGA-E2-A155-01 7 91603204 91603204 T - AKAP9 Frame_Shift_Del p.V77* 0.29 TCGA-E2-A155-01 8 27147674 27147674 G A TRIM35 Nonsense_Mutation p.R262* 0.04 TCGA-E2-A155-01 8 53852794 53852794 C T NPBWR1 Silent p.C109C 0.30 TCGA-E2-A155-01 8 56912024 56912024 G A LYN Missense_Mutation p.G418R 0.34 deleterious(0) probably_damaging(0.998) TCGA-E2-A155-01 8 82615324 82615324 T A ZFAND1 Missense_Mutation p.K172N 0.11 deleterious(0) benign(0.196) TCGA-E2-A155-01 9 138676695 138676695 G A KCNT1 Missense_Mutation p.G1039D 0.10 deleterious(0) probably_damaging(0.994) TCGA-E2-A155-01 9 84530475 84530475 C T SPATA31D5P RNA 0.39 TCGA-E2-A155-01 X 100382636 100382636 G A CENPI Silent p.Q352Q 0.73 TCGA-E2-A155-01 X 11162146 11162146 C T ARHGAP6 Silent p.S710S 0.68 TCGA-E2-A155-01 X 63488612 63488612 C T MTMR8 Missense_Mutation p.M640I 0.74 tolerated_low_confidence(0.48) benign(0) TCGA-E2-A156-01 11 57003857 57003857 C T APLNR Missense_Mutation p.V208M 0.46 tolerated(0.15) benign(0.01) TCGA-E2-A156-01 11 61105416 61105416 T A DAK Missense_Mutation p.S3T 0.40 tolerated(0.31) benign(0.088) TCGA-E2-A156-01 11 6964815 6964815 G T ZNF215 Nonsense_Mutation p.E219* 0.33 TCGA-E2-A156-01 12 123078852 123078852 T A KNTC1 Missense_Mutation p.H1425Q 0.43 tolerated(0.59) benign(0.075) TCGA-E2-A156-01 12 123078899 123078899 A G KNTC1 Missense_Mutation p.D1441G 0.44 tolerated(0.17) possibly_damaging(0.681) TCGA-E2-A156-01 12 5936961 5936961 G A ANO2 Missense_Mutation p.A285V 0.41 tolerated(0.21) benign(0.004) TCGA-E2-A156-01 13 39266455 39266455 C T FREM2 Silent p.I1658I 0.42 TCGA-E2-A156-01 13 76111651 76111651 G A COMMD6 Intron 0.42 TCGA-E2-A156-01 14 106877757 106877757 G A IGHV4-39 Silent p.I79I 0.21 TCGA-E2-A156-01 15 33066452 33066452 A G FMN1 3'UTR 0.42 TCGA-E2-A156-01 15 33256405 33256405 T - FMN1 Frame_Shift_Del p.D791Afs*49 0.36 TCGA-E2-A156-01 15 50955194 50955194 T G TRPM7 Missense_Mutation p.Y18S 0.03 tolerated(0.23) benign(0.101) TCGA-E2-A156-01 15 77406833 77406833 G A PEAK1 Missense_Mutation p.R1636W 0.12 tolerated(0.25) benign(0) TCGA-E2-A156-01 16 67644796 67644796 G T CTCF Nonsense_Mutation p.E21* 0.85 TCGA-E2-A156-01 17 11984840 11984856 CAGTTAAAGTAGGTGAT - MAP2K4 Splice_Site p.X129_splice 0.78 TCGA-E2-A156-01 1 208062812 208062812 G T CD34 Missense_Mutation p.T251K 0.45 tolerated(0.07) probably_damaging(0.997) TCGA-E2-A156-01 1 24078169 24078170 - C TCEB3 Frame_Shift_Ins p.K386Qfs*8 0.31 TCGA-E2-A156-01 2 242202328 242202328 G A HDLBP Missense_Mutation p.P83L 0.42 tolerated(0.05) benign(0.2) TCGA-E2-A156-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.90 deleterious(0.04) probably_damaging(0.96) TCGA-E2-A156-01 3 32933232 32933232 G A TRIM71 Missense_Mutation p.G846S 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-E2-A156-01 5 154393522 154393522 G A KIF4B Missense_Mutation p.V35M 0.05 deleterious(0) probably_damaging(0.911) TCGA-E2-A156-01 5 156945842 156945842 C G ADAM19 Missense_Mutation p.D219H 0.38 deleterious(0) probably_damaging(0.999) TCGA-E2-A156-01 5 56168483 56168483 G - MAP3K1 Frame_Shift_Del p.R480Kfs*7 0.30 TCGA-E2-A156-01 6 116950783 116950783 A G RSPH4A Silent p.E572E 0.04 TCGA-E2-A156-01 6 7583485 7583485 G T DSP Missense_Mutation p.G1997V 0.39 probably_damaging(1) TCGA-E2-A156-01 7 142168485 142168485 G A TRBV5-4 Missense_Mutation p.P80S 0.40 tolerated(0.25) benign(0.004) TCGA-E2-A156-01 7 14647119 14647139 AATTTTCTGTAAATTCTATAA - DGKB Splice_Site p.X454_splice 0.32 TCGA-E2-A156-01 8 145535048 145535048 C G HSF1 Missense_Mutation p.I202M 0.44 deleterious(0.02) benign(0.277) TCGA-E2-A156-01 9 80856675 80856675 T C CEP78 Missense_Mutation p.L188P 0.18 deleterious(0) possibly_damaging(0.885) TCGA-E2-A156-01 X 79698227 79698227 G A FAM46D Silent p.L63L 0.06 TCGA-E2-A158-01 10 129875909 129875909 G A PTPRE Missense_Mutation p.R585Q 0.92 deleterious(0.01) possibly_damaging(0.881) TCGA-E2-A158-01 10 73111428 73111428 T C SLC29A3 Missense_Mutation p.F165L 0.42 deleterious(0.03) possibly_damaging(0.523) TCGA-E2-A158-01 10 94714430 94714430 C T EXOC6 Silent p.L524L 0.04 TCGA-E2-A158-01 10 96030357 96030357 A C PLCE1 Missense_Mutation p.K1502Q 0.45 tolerated(0.18) probably_damaging(1) TCGA-E2-A158-01 11 47193042 47193042 T G ARFGAP2 Silent p.L292L 0.82 TCGA-E2-A158-01 12 51450235 51450235 G A LETMD1 Missense_Mutation p.A302T 0.45 deleterious(0) probably_damaging(0.991) TCGA-E2-A158-01 12 69202261 69202261 G C MDM2 Missense_Mutation p.V2L 0.88 tolerated_low_confidence(0.33) benign(0.198) TCGA-E2-A158-01 12 69666899 69666899 G C CPSF6 3'UTR 0.91 TCGA-E2-A158-01 12 7475135 7475135 G T ACSM4 Missense_Mutation p.V375L 0.33 deleterious(0.02) benign(0.285) TCGA-E2-A158-01 12 97045441 97045441 C A C12orf55 Missense_Mutation p.L1650I 0.37 tolerated(0.09) possibly_damaging(0.54) TCGA-E2-A158-01 13 77644815 77644815 A G MYCBP2 Missense_Mutation p.M3914T 0.89 possibly_damaging(0.822) TCGA-E2-A158-01 13 96547535 96547535 A G UGGT2 Silent p.D886D 0.93 TCGA-E2-A158-01 15 91423399 91423399 G A FURIN Silent p.L484L 0.41 TCGA-E2-A158-01 16 16349580 16349580 G A NOMO3 Missense_Mutation p.V323M 0.39 tolerated(0.13) benign(0.175) TCGA-E2-A158-01 16 19883964 19883981 CAGGGCGCCCGCCCCGGC - GPRC5B In_Frame_Del p.A63_L68del 0.69 TCGA-E2-A158-01 16 4292057 4292057 C T SRL Silent p.L4L 0.15 TCGA-E2-A158-01 16 46633775 46633775 A C SHCBP1 Missense_Mutation p.F438C 0.02 deleterious(0) possibly_damaging(0.9) TCGA-E2-A158-01 16 53534164 53534164 G C AKTIP Missense_Mutation p.P3R 0.27 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-E2-A158-01 17 53398125 53398125 C G HLF Missense_Mutation p.S258W 0.84 deleterious(0) probably_damaging(0.989) TCGA-E2-A158-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.81 deleterious(0) probably_damaging(1) TCGA-E2-A158-01 17 76490680 76490680 C G DNAH17 Missense_Mutation p.E2075Q 0.49 possibly_damaging(0.739) TCGA-E2-A158-01 17 80015926 80015926 G C DUS1L 3'UTR 0.50 TCGA-E2-A158-01 18 31320313 31320313 T A ASXL3 Missense_Mutation p.I982K 0.39 probably_damaging(0.998) TCGA-E2-A158-01 18 44157812 44157812 C T LOXHD1 Missense_Mutation p.E610K 0.43 deleterious(0.01) possibly_damaging(0.81) TCGA-E2-A158-01 18 61325830 61325830 G C SERPINB3 Missense_Mutation p.T129S 0.48 tolerated(0.05) benign(0.025) TCGA-E2-A158-01 19 14199331 14199331 C T SAMD1 Silent p.L399L 0.46 TCGA-E2-A158-01 19 15838966 15838966 C T OR10H2 Missense_Mutation p.T38M 0.45 deleterious(0.02) benign(0.317) TCGA-E2-A158-01 19 17985316 17985316 G T SLC5A5 Missense_Mutation p.G146V 0.43 deleterious(0) probably_damaging(1) TCGA-E2-A158-01 19 21909523 21909523 G C ZNF100 Missense_Mutation p.Q531E 0.42 deleterious_low_confidence(0.01) benign(0.01) TCGA-E2-A158-01 19 35232115 35232115 G T ZNF181 Missense_Mutation p.G277C 0.45 tolerated(0.06) probably_damaging(0.998) TCGA-E2-A158-01 19 49658427 49658427 G T HRC Missense_Mutation p.P23H 0.43 deleterious(0) benign(0.282) TCGA-E2-A158-01 19 49978980 49978989 GGGACTCAGT - FLT3LG Frame_Shift_Del p.L24Pfs*75 0.38 TCGA-E2-A158-01 19 49993282 49993282 C T RPL13A Intron 0.46 TCGA-E2-A158-01 19 50906809 50906809 G C POLD1 Missense_Mutation p.Q399H 0.04 tolerated(0.14) probably_damaging(0.992) TCGA-E2-A158-01 19 54254529 54254529 C G MIR522 RNA 0.42 TCGA-E2-A158-01 19 57326308 57326308 A C PEG3 Missense_Mutation p.C1168G 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-E2-A158-01 1 11107016 11107016 G A MASP2 Missense_Mutation p.R56C 0.16 deleterious(0) probably_damaging(0.988) TCGA-E2-A158-01 1 120438621 120438621 C A ADAM30 Missense_Mutation p.M113I 0.29 tolerated(0.4) benign(0.007) TCGA-E2-A158-01 1 146759365 146759365 G C CHD1L Missense_Mutation p.R758P 0.31 deleterious(0) probably_damaging(0.988) TCGA-E2-A158-01 1 15541910 15541910 C A TMEM51 Missense_Mutation p.H109Q 0.65 tolerated(0.37) benign(0.007) TCGA-E2-A158-01 1 156498803 156498803 C G IQGAP3 Missense_Mutation p.Q1492H 0.30 tolerated(0.13) benign(0.099) TCGA-E2-A158-01 1 160388826 160388826 C T VANGL2 Missense_Mutation p.T76M 0.30 deleterious(0) probably_damaging(0.999) TCGA-E2-A158-01 1 167367365 167367365 T G POU2F1 Missense_Mutation p.L422V 0.28 deleterious(0.05) unknown(0) TCGA-E2-A158-01 1 179609514 179609514 G A TDRD5 Silent p.K578K 0.48 TCGA-E2-A158-01 1 197073197 197073197 C A ASPM Missense_Mutation p.M1728I 0.41 tolerated(0.25) benign(0.006) TCGA-E2-A158-01 1 202119541 202119541 C G PTPN7 Missense_Mutation p.G401A 0.52 deleterious(0) probably_damaging(1) TCGA-E2-A158-01 1 204588156 204588156 C T LRRN2 Missense_Mutation p.R322Q 0.37 tolerated(0.08) probably_damaging(0.909) TCGA-E2-A158-01 1 23419726 23419727 TA - LUZP1 Frame_Shift_Del p.I343Kfs*29 0.41 TCGA-E2-A158-01 1 32223003 32223003 G T BAI2 5'UTR 0.65 TCGA-E2-A158-01 1 34254306 34254306 C A CSMD2 Missense_Mutation p.G480C 0.30 deleterious(0) probably_damaging(1) TCGA-E2-A158-01 1 44422562 44422562 T C IPO13 Silent p.D395D 0.41 TCGA-E2-A158-01 20 2775057 2775057 G A CPXM1 Missense_Mutation p.R662C 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A158-01 20 30785163 30785171 GGTCACAGG - PLAGL2 In_Frame_Del p.P192_D194del 0.72 TCGA-E2-A158-01 20 60794857 60794857 A T HRH3 Missense_Mutation p.L57H 0.32 deleterious(0) probably_damaging(0.998) TCGA-E2-A158-01 21 40188980 40188980 C T ETS2 Missense_Mutation p.T185I 0.60 tolerated(0.12) benign(0.177) TCGA-E2-A158-01 22 37540124 37540124 C A IL2RB Splice_Site p.X30_splice 0.40 TCGA-E2-A158-01 2 157407221 157407221 A G GPD2 Missense_Mutation p.S312G 0.44 deleterious(0) probably_damaging(0.956) TCGA-E2-A158-01 2 175613362 175613362 G A CHRNA1 Silent p.I421I 0.44 TCGA-E2-A158-01 2 177054834 177054842 CCCCGGCAG - HOXD1 In_Frame_Del p.G319_P321del 0.56 TCGA-E2-A158-01 2 179585241 179585241 T G TTN Missense_Mutation p.I7750L 0.42 TCGA-E2-A158-01 2 179592849 179592849 A C TTN Missense_Mutation p.L6568V 0.47 TCGA-E2-A158-01 2 189928732 189928732 C G COL5A2 Missense_Mutation p.G582R 0.46 probably_damaging(1) TCGA-E2-A158-01 2 191900935 191900935 C T STAT4 Missense_Mutation p.G509S 0.52 deleterious(0) probably_damaging(0.999) TCGA-E2-A158-01 2 241569563 241569563 C T GPR35 Missense_Mutation p.A96V 0.44 tolerated(0.06) probably_damaging(0.919) TCGA-E2-A158-01 2 32379525 32379525 A G SPAST Missense_Mutation p.Y604C 0.34 deleterious(0) probably_damaging(0.999) TCGA-E2-A158-01 2 44457678 44457678 G C PPM1B Missense_Mutation p.A421P 0.30 deleterious_low_confidence(0.02) benign(0.446) TCGA-E2-A158-01 2 55462729 55462730 - T RPS27A 3'UTR 0.38 TCGA-E2-A158-01 2 675561 675561 A T TMEM18 Missense_Mutation p.C43S 0.32 deleterious(0.04) benign(0.429) TCGA-E2-A158-01 2 74042839 74042839 G C C2orf78 Missense_Mutation p.D497H 0.26 deleterious(0.03) benign(0.103) TCGA-E2-A158-01 2 74474219 74474219 T A SLC4A5 Missense_Mutation p.D668V 0.26 tolerated(0.15) possibly_damaging(0.673) TCGA-E2-A158-01 2 96259815 96259815 G C TRIM43 Missense_Mutation p.C15S 0.44 deleterious(0) probably_damaging(0.991) TCGA-E2-A158-01 2 99953840 99953840 C A EIF5B 5'UTR 0.36 TCGA-E2-A158-01 3 100015073 100015073 C G TBC1D23 Missense_Mutation p.S277C 0.43 deleterious(0) benign(0.214) TCGA-E2-A158-01 3 107096274 107096274 C T CCDC54 5'UTR 0.62 TCGA-E2-A158-01 3 121828123 121828123 C G CD86 Missense_Mutation p.P239A 0.44 tolerated(0.41) benign(0.022) TCGA-E2-A158-01 3 97439149 97439149 C A EPHA6 Silent p.A943A 0.04 TCGA-E2-A158-01 4 123207765 123207765 C T KIAA1109 Missense_Mutation p.T3036I 0.45 benign(0.071) TCGA-E2-A158-01 4 151504781 151504781 G C MAB21L2 Silent p.V200V 0.36 TCGA-E2-A158-01 4 17528460 17528460 A G CLRN2 Missense_Mutation p.I152V 0.75 tolerated(1) benign(0.003) TCGA-E2-A158-01 4 53752015 53752015 T A SCFD2 Missense_Mutation p.S621C 0.51 deleterious(0.01) probably_damaging(0.959) TCGA-E2-A158-01 4 79340212 79340212 A T FRAS1 Missense_Mutation p.N1512I 0.48 possibly_damaging(0.522) TCGA-E2-A158-01 5 140746002 140746002 G C PCDHGA5 Missense_Mutation p.C702S 0.79 deleterious_low_confidence(0.01) benign(0.391) TCGA-E2-A158-01 5 179440193 179440193 C A RNF130 Silent p.P187P 0.84 TCGA-E2-A158-01 6 106634409 106634409 G C ATG5 3'UTR 0.41 TCGA-E2-A158-01 6 157522383 157522383 G A ARID1B Missense_Mutation p.R1552K 0.83 probably_damaging(0.97) TCGA-E2-A158-01 6 17283067 17283067 G C RBM24 Missense_Mutation p.R67T 0.42 deleterious(0.01) benign(0.264) TCGA-E2-A158-01 6 39693150 39693150 C A KIF6 5'UTR 0.51 TCGA-E2-A158-01 6 43017144 43017144 C T CUL7 Splice_Site p.X693_splice 0.39 TCGA-E2-A158-01 7 146829361 146829361 G T CNTNAP2 Nonsense_Mutation p.E370* 0.59 TCGA-E2-A158-01 7 26412173 26412173 C G SNX10 Missense_Mutation p.T196R 0.61 tolerated_low_confidence(0.11) benign(0) TCGA-E2-A158-01 7 73245517 73245517 C G CLDN4 5'UTR 0.19 TCGA-E2-A158-01 8 132966110 132966110 A G EFR3A Silent p.K178K 0.67 TCGA-E2-A158-01 8 142481164 142481164 C T MROH5 3'UTR 0.29 TCGA-E2-A158-01 8 38034431 38034431 C A BAG4 Missense_Mutation p.P15Q 0.24 tolerated_low_confidence(0.08) unknown(0) TCGA-E2-A158-01 9 114464479 114464479 C A C9orf84 Missense_Mutation p.A935S 0.47 tolerated(0.63) possibly_damaging(0.903) TCGA-E2-A158-01 9 21077875 21077875 A C IFNB1 5'UTR 0.45 TCGA-E2-A158-01 9 33116073 33116073 A G B4GALT1 Missense_Mutation p.L292P 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-E2-A158-01 X 118221420 118221420 A T KIAA1210 Missense_Mutation p.M1258K 0.47 tolerated(0.1) benign(0.035) TCGA-E2-A158-01 X 130408820 130408820 C T IGSF1 Nonsense_Mutation p.W1173* 0.30 TCGA-E2-A158-01 X 153278098 153278098 C T IRAK1 Silent p.S654S 0.60 TCGA-E2-A158-01 X 22208620 22208620 G A PHEX Splice_Site p.X549_splice 0.45 TCGA-E2-A158-01 X 49040158 49040158 G T PRICKLE3 Intron 0.15 TCGA-E2-A158-01 X 69353826 69353826 C T IGBP1 Missense_Mutation p.P10L 0.44 tolerated(0.05) benign(0.035) TCGA-E2-A159-01 10 16955917 16955917 G A CUBN Missense_Mutation p.R2476W 0.17 tolerated(0.07) benign(0.011) TCGA-E2-A159-01 10 38120483 38120483 C G ZNF248 3'UTR 0.23 TCGA-E2-A159-01 10 5436386 5436386 G T TUBAL3 Missense_Mutation p.F145L 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-E2-A159-01 10 5920091 5920091 C G ANKRD16 3'UTR 0.19 TCGA-E2-A159-01 10 85962805 85962805 G A CDHR1 Missense_Mutation p.E237K 0.19 tolerated(0.88) benign(0.261) TCGA-E2-A159-01 10 93572805 93572805 G A TNKS2 Missense_Mutation p.D89N 0.32 tolerated(0.14) probably_damaging(0.989) TCGA-E2-A159-01 11 108031617 108031617 T C NPAT Missense_Mutation p.K1399R 0.25 tolerated(0.08) probably_damaging(0.946) TCGA-E2-A159-01 11 108032049 108032049 G C NPAT Nonsense_Mutation p.S1255* 0.26 TCGA-E2-A159-01 11 118765300 118765300 C T CXCR5 Silent p.C349C 0.18 TCGA-E2-A159-01 11 118885784 118885784 C G CCDC84 Missense_Mutation p.L266V 0.26 deleterious(0) benign(0.275) TCGA-E2-A159-01 11 419605 419605 C G ANO9 Silent p.L637L 0.35 TCGA-E2-A159-01 11 48177413 48177413 C G PTPRJ Missense_Mutation p.A1097G 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A159-01 11 557569 557569 C T C11orf35 Intron 0.30 TCGA-E2-A159-01 11 557598 557598 C G C11orf35 Missense_Mutation p.E200Q 0.33 tolerated(0.07) benign(0.074) TCGA-E2-A159-01 11 557881 557881 C T C11orf35 Intron 0.43 TCGA-E2-A159-01 11 558306 558306 C G C11orf35 Intron 0.29 TCGA-E2-A159-01 11 558341 558341 C T C11orf35 Intron 0.29 TCGA-E2-A159-01 11 558342 558342 C T C11orf35 Intron 0.30 TCGA-E2-A159-01 11 64068205 64068205 C G TEX40 Missense_Mutation p.T33R 0.32 tolerated(0.31) possibly_damaging(0.732) TCGA-E2-A159-01 11 64072038 64072038 G A TEX40 Missense_Mutation p.D175N 0.25 tolerated(0.21) benign(0.004) TCGA-E2-A159-01 11 65714666 65714666 C A TSGA10IP RNA 0.15 TCGA-E2-A159-01 11 66392812 66392812 C T RBM14 Nonsense_Mutation p.Q489* 0.27 TCGA-E2-A159-01 11 66468355 66468355 C T SPTBN2 Missense_Mutation p.R1072H 0.19 tolerated(0.09) probably_damaging(0.998) TCGA-E2-A159-01 11 75590926 75590926 C T UVRAG Missense_Mutation p.P92S 0.15 deleterious(0) probably_damaging(1) TCGA-E2-A159-01 11 77775298 77775298 T C THRSP Missense_Mutation p.L124P 0.15 deleterious(0) probably_damaging(0.993) TCGA-E2-A159-01 12 108917063 108917063 G C SART3 3'UTR 0.35 TCGA-E2-A159-01 12 29709801 29709801 C T TMTC1 Silent p.G555G 0.27 TCGA-E2-A159-01 12 52377883 52377883 G T ACVR1B Missense_Mutation p.M345I 0.40 deleterious(0.02) benign(0.287) TCGA-E2-A159-01 12 52380701 52380701 G C ACVR1B Missense_Mutation p.E453D 0.35 deleterious(0) probably_damaging(0.915) TCGA-E2-A159-01 12 53895943 53895943 C T TARBP2 Silent p.V66V 0.24 TCGA-E2-A159-01 12 58112055 58112055 G A OS9 Missense_Mutation p.E421K 0.28 tolerated(0.22) benign(0.028) TCGA-E2-A159-01 12 67072694 67072694 C T GRIP1 5'UTR 0.34 TCGA-E2-A159-01 12 7076337 7076337 C T PHB2 Silent p.K262K 0.28 TCGA-E2-A159-01 13 102030929 102030929 C A NALCN Missense_Mutation p.V123L 0.25 tolerated(0.57) benign(0.028) TCGA-E2-A159-01 13 26793693 26793693 C T RNF6 Missense_Mutation p.E32K 0.29 deleterious(0) possibly_damaging(0.591) TCGA-E2-A159-01 13 30091320 30091320 G A SLC7A1 Silent p.I546I 0.22 TCGA-E2-A159-01 13 48955532 48955534 TTA AT RB1 Frame_Shift_Del p.L550Mfs*61 0.20 TCGA-E2-A159-01 13 93879635 93879635 G T GPC6 5'UTR 0.29 TCGA-E2-A159-01 14 35873760 35873760 C T NFKBIA Missense_Mutation p.D31N 0.28 deleterious(0) probably_damaging(0.998) TCGA-E2-A159-01 14 50576130 50576130 C G VCPKMT 3'UTR 0.20 TCGA-E2-A159-01 14 64656888 64656888 G A SYNE2 Missense_Mutation p.E5991K 0.04 probably_damaging(0.999) TCGA-E2-A159-01 15 40710373 40710373 C T IVD Nonsense_Mutation p.R398* 0.34 TCGA-E2-A159-01 15 43545083 43545083 A G TGM5 Missense_Mutation p.Y246H 0.28 deleterious(0) probably_damaging(0.966) TCGA-E2-A159-01 15 65628154 65628154 C G IGDCC3 Missense_Mutation p.E184Q 0.34 tolerated(0.11) benign(0.038) TCGA-E2-A159-01 15 66774131 66774131 G A MAP2K1 Missense_Mutation p.E203K 0.31 deleterious(0) probably_damaging(0.995) TCGA-E2-A159-01 16 2140301 2140301 G C PKD1 Silent p.L4143L 0.33 TCGA-E2-A159-01 16 67682005 67682005 C T RLTPR Silent p.L374L 0.31 TCGA-E2-A159-01 17 1537890 1537890 C T SCARF1 3'UTR 0.25 TCGA-E2-A159-01 17 1554097 1554097 C T PRPF8 Silent p.%3D 0.36 TCGA-E2-A159-01 17 36482587 36482587 C T GPR179 Missense_Mutation p.E2289K 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-E2-A159-01 17 42786063 42786063 G A DBF4B 5'UTR 0.25 TCGA-E2-A159-01 17 72926762 72926762 G C OTOP2 Silent p.L344L 0.41 TCGA-E2-A159-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.32 deleterious(0) probably_damaging(1) TCGA-E2-A159-01 17 7667478 7667478 T G DNAH2 Missense_Mutation p.L1075V 0.37 benign(0.132) TCGA-E2-A159-01 18 60052085 60052085 G A TNFRSF11A Missense_Mutation p.E557K 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-E2-A159-01 18 71740747 71740747 G A FBXO15 Silent p.V494V 0.30 TCGA-E2-A159-01 19 23926992 23926992 C G ZNF681 Missense_Mutation p.E454Q 0.37 deleterious(0.04) possibly_damaging(0.847) TCGA-E2-A159-01 19 2997727 2997727 G C TLE2 3'UTR 0.49 TCGA-E2-A159-01 19 46128000 46128000 C A EML2 Missense_Mutation p.G474V 0.32 deleterious(0) probably_damaging(0.972) TCGA-E2-A159-01 19 51330233 51330233 G T KLK15 Missense_Mutation p.P128T 0.18 tolerated(0.11) probably_damaging(0.996) TCGA-E2-A159-01 19 51649165 51649165 C G SIGLEC7 Missense_Mutation p.L272V 0.22 tolerated(0.05) probably_damaging(0.999) TCGA-E2-A159-01 19 51983701 51983701 T A CEACAM18 Missense_Mutation p.V117D 0.23 tolerated(0.12) benign(0.223) TCGA-E2-A159-01 19 52529005 52529005 C T ZNF614 5'UTR 0.28 TCGA-E2-A159-01 19 55591557 55591557 G A EPS8L1 Missense_Mutation p.G114S 0.13 tolerated(0.54) benign(0.103) TCGA-E2-A159-01 19 55716783 55716783 C T PTPRH Missense_Mutation p.G177E 0.24 unknown(0) TCGA-E2-A159-01 1 149785205 149785205 G A HIST2H3D Missense_Mutation p.S11L 0.14 deleterious_low_confidence(0.01) benign(0.003) TCGA-E2-A159-01 1 150484178 150484178 C T ECM1 Silent p.F345F 0.24 TCGA-E2-A159-01 1 150684035 150684035 G C HORMAD1 Missense_Mutation p.P105A 0.22 tolerated(0.07) benign(0.03) TCGA-E2-A159-01 1 152083125 152083125 G C TCHH Silent p.L856L 0.10 TCGA-E2-A159-01 1 154163705 154163705 T A TPM3 Missense_Mutation p.D67V 0.18 tolerated(0.06) benign(0.194) TCGA-E2-A159-01 1 155150660 155150660 C G TRIM46 Silent p.G364G 0.16 TCGA-E2-A159-01 1 156531792 156531792 G C IQGAP3 Silent p.V293V 0.12 TCGA-E2-A159-01 1 156819035 156819035 C T INSRR Intron 0.22 TCGA-E2-A159-01 1 158325653 158325653 C G CD1E Missense_Mutation p.P221R 0.19 deleterious(0.02) possibly_damaging(0.879) TCGA-E2-A159-01 1 159409770 159409770 G C OR10J1 Silent p.L74L 0.19 TCGA-E2-A159-01 1 16525668 16525668 G A ARHGEF19 Missense_Mutation p.S743L 0.25 tolerated(0.75) benign(0.002) TCGA-E2-A159-01 1 19407923 19407923 C G UBR4 Missense_Mutation p.W5051C 0.25 probably_damaging(0.994) TCGA-E2-A159-01 1 204085760 204085760 G C SOX13 Missense_Mutation p.E182Q 0.09 deleterious(0) probably_damaging(0.938) TCGA-E2-A159-01 1 204086881 204086881 G A SOX13 Intron 0.11 TCGA-E2-A159-01 1 209803110 209803110 C T LAMB3 Silent p.P368P 0.29 TCGA-E2-A159-01 1 235345497 235345497 C G ARID4B Missense_Mutation p.D913H 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A159-01 1 237052573 237052573 T A MTR Missense_Mutation p.W982R 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A159-01 1 237052610 237052610 C G MTR Missense_Mutation p.P994R 0.14 deleterious(0) probably_damaging(0.99) TCGA-E2-A159-01 1 24646027 24646027 C T GRHL3 5'UTR 0.11 TCGA-E2-A159-01 1 247320363 247320363 G A ZNF124 Silent p.F125F 0.09 TCGA-E2-A159-01 1 247769442 247769442 C G OR2G3 Silent p.L185L 0.13 TCGA-E2-A159-01 1 248616977 248616977 G C OR2T2 Missense_Mutation p.L293F 0.10 tolerated(0.11) probably_damaging(0.998) TCGA-E2-A159-01 1 248801684 248801684 C G OR2T35 Missense_Mutation p.L292F 0.15 tolerated(0.11) probably_damaging(0.998) TCGA-E2-A159-01 1 31437562 31437562 G A PUM1 Missense_Mutation p.P761L 0.21 deleterious(0) probably_damaging(0.999) TCGA-E2-A159-01 1 35873661 35873661 G C ZMYM4 Missense_Mutation p.L1283F 0.20 deleterious(0) probably_damaging(0.997) TCGA-E2-A159-01 1 39797744 39797744 G A MACF1 Intron 0.23 TCGA-E2-A159-01 1 39798309 39798309 G C MACF1 Intron 0.23 TCGA-E2-A159-01 1 77748056 77748056 G C AK5 Missense_Mutation p.E20Q 0.30 tolerated(0.12) benign(0.068) TCGA-E2-A159-01 20 20269469 20269469 C T C20orf26 Nonsense_Mutation p.Q1005* 0.23 TCGA-E2-A159-01 20 23064322 23064322 G C CD93 3'UTR 0.19 TCGA-E2-A159-01 20 43247165 43247165 G C PKIG 3'UTR 0.33 TCGA-E2-A159-01 20 58494610 58494610 G C SYCP2 Missense_Mutation p.Q114E 0.18 tolerated(0.06) benign(0.228) TCGA-E2-A159-01 21 22804504 22804504 G A NCAM2 Silent p.P519P 0.24 TCGA-E2-A159-01 21 39817464 39817464 C T ERG Missense_Mutation p.M40I 0.33 deleterious(0.05) benign(0.298) TCGA-E2-A159-01 21 45745033 45745033 C G PFKL Intron 0.28 TCGA-E2-A159-01 21 47851969 47851969 A G PCNT Missense_Mutation p.E2864G 0.25 possibly_damaging(0.727) TCGA-E2-A159-01 22 24919738 24919738 C T UPB1 Silent p.F356F 0.34 TCGA-E2-A159-01 22 38933603 38933603 G A DMC1 Missense_Mutation p.T277I 0.36 deleterious(0.01) benign(0.305) TCGA-E2-A159-01 22 40425538 40425538 C A FAM83F Missense_Mutation p.S491Y 0.37 deleterious_low_confidence(0.01) benign(0.135) TCGA-E2-A159-01 2 11284204 11284204 G C C2orf50 Missense_Mutation p.K152N 0.21 deleterious(0) probably_damaging(0.956) TCGA-E2-A159-01 2 11702668 11702668 C A GREB1 Missense_Mutation p.F79L 0.27 deleterious(0) benign(0.029) TCGA-E2-A159-01 2 120194851 120194851 C A TMEM37 Silent p.V136V 0.18 TCGA-E2-A159-01 2 133636435 133636435 G T NCKAP5 Silent p.R212R 0.29 TCGA-E2-A159-01 2 160257133 160257133 G C BAZ2B Missense_Mutation p.L959V 0.31 possibly_damaging(0.677) TCGA-E2-A159-01 2 170668867 170668867 C G METTL5 Intron 0.32 TCGA-E2-A159-01 2 1805566 1805566 C G MYT1L Missense_Mutation p.E1058Q 0.13 deleterious(0.01) possibly_damaging(0.885) TCGA-E2-A159-01 2 18757611 18757611 C G NT5C1B Missense_Mutation p.D450H 0.17 deleterious(0.04) benign(0.14) TCGA-E2-A159-01 2 21232419 21232419 C T APOB Missense_Mutation p.D2441N 0.23 benign(0) TCGA-E2-A159-01 2 218938536 218938536 C T RUFY4 Intron 0.27 TCGA-E2-A159-01 2 225338944 225338944 C T CUL3 3'UTR 0.13 TCGA-E2-A159-01 2 24484608 24484608 C T ITSN2 Missense_Mutation p.D787N 0.24 deleterious(0.04) unknown(0) TCGA-E2-A159-01 2 25040616 25040616 C T CENPO Nonsense_Mutation p.Q282* 0.23 TCGA-E2-A159-01 2 5833196 5833196 G T SOX11 Missense_Mutation p.D115Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-E2-A159-01 2 85893784 85893784 C G SFTPB Missense_Mutation p.D129H 0.22 deleterious(0.02) probably_damaging(0.981) TCGA-E2-A159-01 2 97881276 97881276 G C ANKRD36 Missense_Mutation p.E1239Q 0.15 tolerated_low_confidence(0.29) possibly_damaging(0.65) TCGA-E2-A159-01 3 113329895 113329895 G A SIDT1 Silent p.L587L 0.21 TCGA-E2-A159-01 3 114014431 114014431 C T TIGIT Missense_Mutation p.S34F 0.22 deleterious(0) probably_damaging(0.967) TCGA-E2-A159-01 3 133339115 133339115 C T TOPBP1 Silent p.V1085V 0.20 TCGA-E2-A159-01 3 169490991 169490991 C G MYNN 5'UTR 0.29 TCGA-E2-A159-01 3 178936081 178936081 T C PIK3CA Silent p.S541S 0.21 TCGA-E2-A159-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-E2-A159-01 3 178936083 178936083 A G PIK3CA Missense_Mutation p.E542G 0.21 tolerated(0.07) benign(0.286) TCGA-E2-A159-01 3 184005730 184005730 G C ECE2 Missense_Mutation p.E575Q 0.21 tolerated(0.16) benign(0.14) TCGA-E2-A159-01 3 193335038 193335038 G T OPA1 Nonsense_Mutation p.E174* 0.21 TCGA-E2-A159-01 3 39228203 39228203 G C XIRP1 Missense_Mutation p.L912V 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-E2-A159-01 3 43122777 43122777 C T POMGNT2 Silent p.L49L 0.30 TCGA-E2-A159-01 3 48667870 48667870 C A SLC26A6 Splice_Site p.X442_splice 0.34 TCGA-E2-A159-01 3 9791867 9791867 G A OGG1 5'UTR 0.16 TCGA-E2-A159-01 4 102946639 102946639 C A BANK1 Missense_Mutation p.L523M 0.39 tolerated(0.13) possibly_damaging(0.885) TCGA-E2-A159-01 4 121616407 121616407 C T PRDM5 Silent p.L584L 0.30 TCGA-E2-A159-01 4 148575483 148575483 G C PRMT10 Missense_Mutation p.S522C 0.32 tolerated(0.26) benign(0.008) TCGA-E2-A159-01 4 15444327 15444327 C G C1QTNF7 Missense_Mutation p.F265L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-E2-A159-01 4 164436573 164436573 G A TMA16 Silent p.T116T 0.32 TCGA-E2-A159-01 4 177049888 177049888 G C WDR17 Splice_Site p.X288_splice 0.29 TCGA-E2-A159-01 4 40440841 40440841 C A RBM47 Nonsense_Mutation p.E24* 0.26 TCGA-E2-A159-01 4 8607783 8607783 C G CPZ Missense_Mutation p.I259M 0.41 deleterious(0) possibly_damaging(0.873) TCGA-E2-A159-01 5 140431703 140431703 C T PCDHB1 Silent p.D216D 0.22 TCGA-E2-A159-01 5 14399162 14399162 T C TRIO Missense_Mutation p.Y1533H 0.30 probably_damaging(0.998) TCGA-E2-A159-01 5 151047100 151047100 G C SPARC Silent p.L171L 0.22 TCGA-E2-A159-01 5 151178806 151178806 C G G3BP1 Missense_Mutation p.L259V 0.20 tolerated(0.11) probably_damaging(0.981) TCGA-E2-A159-01 5 153409057 153409057 G C FAM114A2 Missense_Mutation p.Q163E 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-E2-A159-01 5 160076224 160076224 C T ATP10B Missense_Mutation p.V239M 0.21 tolerated(0.07) probably_damaging(0.983) TCGA-E2-A159-01 5 169810582 169810582 T C KCNMB1 Intron 0.23 TCGA-E2-A159-01 5 170669806 170669806 G A RANBP17 Missense_Mutation p.E920K 0.25 tolerated(0.27) benign(0.214) TCGA-E2-A159-01 5 176931433 176931433 C G DOK3 Missense_Mutation p.E348Q 0.26 tolerated(0.13) benign(0.022) TCGA-E2-A159-01 5 177669088 177669088 C G COL23A1 Missense_Mutation p.Q512H 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-E2-A159-01 5 58270700 58270700 C G PDE4D Missense_Mutation p.E741Q 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-E2-A159-01 5 64892251 64892251 G C TRIM23 Missense_Mutation p.Q473E 0.27 deleterious(0.01) possibly_damaging(0.899) TCGA-E2-A159-01 5 94863730 94863730 C G TTC37 Missense_Mutation p.R374P 0.25 tolerated(0.12) benign(0.086) TCGA-E2-A159-01 6 106967869 106967869 G C AIM1 Missense_Mutation p.G521A 0.22 tolerated_low_confidence(0.15) benign(0.002) TCGA-E2-A159-01 6 13283675 13283675 G A TBC1D7 Intron 0.22 TCGA-E2-A159-01 6 134349970 134349970 G T SLC2A12 Silent p.T331T 0.27 TCGA-E2-A159-01 6 144761487 144761487 G C UTRN Splice_Site p.X465_splice 0.20 TCGA-E2-A159-01 6 150240756 150240756 C T RAET1G Silent p.L94L 0.19 TCGA-E2-A159-01 6 152599233 152599233 G T SYNE1 Silent p.L6188L 0.25 TCGA-E2-A159-01 6 157528895 157528895 G A ARID1B Missense_Mutation p.R2207K 0.25 benign(0.027) TCGA-E2-A159-01 6 17837174 17837174 C T KIF13A Missense_Mutation p.A364T 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-E2-A159-01 6 26123759 26123759 G A HIST1H2BC Missense_Mutation p.S125F 0.22 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-E2-A159-01 6 32190561 32190561 C G NOTCH4 Missense_Mutation p.E60Q 0.23 tolerated(0.96) benign(0.33) TCGA-E2-A159-01 6 33247580 33247580 G A WDR46 Silent p.I527I 0.25 TCGA-E2-A159-01 6 43306894 43306894 A C ZNF318 Silent p.S1614S 0.20 TCGA-E2-A159-01 6 44223268 44223268 C T SLC35B2 Missense_Mutation p.M158I 0.25 tolerated(0.3) benign(0.055) TCGA-E2-A159-01 6 44358031 44358031 G A CDC5L Missense_Mutation p.M24I 0.23 deleterious(0) probably_damaging(0.959) TCGA-E2-A159-01 7 100238598 100238598 C A TFR2 Splice_Site p.X96_splice 0.30 TCGA-E2-A159-01 7 107594139 107594139 G T LAMB1 Nonsense_Mutation p.S972* 0.29 TCGA-E2-A159-01 7 150774081 150774081 G A FASTK Silent p.F487F 0.23 TCGA-E2-A159-01 7 20199737 20199737 G C MACC1 Missense_Mutation p.Q83E 0.26 tolerated(0.27) benign(0.141) TCGA-E2-A159-01 7 43992405 43992405 C G UBE2D4 3'UTR 0.17 TCGA-E2-A159-01 7 64292740 64292740 C T ZNF138 3'Flank 0.21 TCGA-E2-A159-01 7 97937087 97937087 G C BAIAP2L1 Silent p.L359L 0.25 TCGA-E2-A159-01 7 98628354 98628354 G C SMURF1 Intron 0.26 TCGA-E2-A159-01 7 99799582 99799582 C A STAG3 Nonsense_Mutation p.S771* 0.23 TCGA-E2-A159-01 8 110587700 110587700 C T SYBU Missense_Mutation p.G476D 0.26 tolerated(0.38) benign(0.005) TCGA-E2-A159-01 8 142506533 142506533 C T MROH5 Missense_Mutation p.R15H 0.30 tolerated(0.34) benign(0.001) TCGA-E2-A159-01 8 143356182 143356182 T G TSNARE1 Missense_Mutation p.E469A 0.17 tolerated(0.09) benign(0.334) TCGA-E2-A159-01 8 22548107 22548107 C T EGR3 Missense_Mutation p.R348H 0.23 deleterious(0) probably_damaging(0.999) TCGA-E2-A159-01 8 27528720 27528720 C T SCARA3 Missense_Mutation p.S558L 0.31 tolerated(0.32) possibly_damaging(0.637) TCGA-E2-A159-01 8 57354365 57354365 C T PENK Silent p.P90P 0.25 TCGA-E2-A159-01 8 95751734 95751734 G C DPY19L4 Missense_Mutation p.S146T 0.20 deleterious(0) probably_damaging(0.999) TCGA-E2-A159-01 9 100890527 100890527 C T CORO2A Missense_Mutation p.E366K 0.24 deleterious(0) probably_damaging(0.917) TCGA-E2-A159-01 9 108210345 108210345 G T FSD1L 5'Flank 0.17 TCGA-E2-A159-01 9 139934476 139934476 C G NPDC1 Missense_Mutation p.E278Q 0.30 deleterious(0) probably_damaging(0.92) TCGA-E2-A159-01 9 139995528 139995528 G C MAN1B1 Missense_Mutation p.E330Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-E2-A159-01 9 14146751 14146751 C G NFIB Missense_Mutation p.D288H 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-E2-A159-01 9 21227650 21227650 G A IFNA17 Missense_Mutation p.L175F 0.08 tolerated(1) benign(0.006) TCGA-E2-A159-01 9 21228014 21228014 C T IFNA17 Silent p.L53L 0.03 TCGA-E2-A159-01 9 3263041 3263041 G T RFX3 Missense_Mutation p.T500K 0.23 deleterious(0) probably_damaging(0.994) TCGA-E2-A159-01 9 33442638 33442638 G A AQP3 Intron 0.29 TCGA-E2-A159-01 9 97082696 97082696 C T NUTM2F Missense_Mutation p.E388K 0.23 tolerated(1) benign(0.014) TCGA-E2-A159-01 X 117679991 117679991 C T DOCK11 Missense_Mutation p.S157F 0.27 deleterious(0.02) benign(0.153) TCGA-E2-A159-01 X 134427939 134427939 A C ZNF75D Missense_Mutation p.L43R 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-E2-A159-01 X 134995026 134995026 C G SAGE1 Silent p.L895L 0.26 TCGA-E2-A159-01 X 135570328 135570328 G T BRS3 Missense_Mutation p.D19Y 0.26 deleterious(0.01) possibly_damaging(0.526) TCGA-E2-A159-01 X 1712954 1712954 C T AKAP17A Missense_Mutation p.T200M 0.22 tolerated(0.1) benign(0.045) TCGA-E2-A159-01 X 27839536 27839536 C T MAGEB10 Missense_Mutation p.S38F 0.21 tolerated(0.61) benign(0.015) TCGA-E2-A159-01 X 30269315 30269315 C A MAGEB1 Missense_Mutation p.H235Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-E2-A159-01 X 48418131 48418131 G A TBC1D25 Missense_Mutation p.E279K 0.24 tolerated(0.09) possibly_damaging(0.887) TCGA-E2-A15A-01 10 1038429 1038429 G T GTPBP4 Missense_Mutation p.D17Y 0.38 deleterious(0) possibly_damaging(0.896) TCGA-E2-A15A-01 10 108380241 108380241 C T SORCS1 Nonsense_Mutation p.W914* 0.21 TCGA-E2-A15A-01 10 123845245 123845245 C T TACC2 Missense_Mutation p.P1077L 0.12 benign(0.092) TCGA-E2-A15A-01 10 70863653 70863653 G A SRGN Missense_Mutation p.R85H 0.16 deleterious(0.02) possibly_damaging(0.487) TCGA-E2-A15A-01 11 114318554 114318554 G C REXO2 Missense_Mutation p.W179C 0.24 deleterious(0) probably_damaging(1) TCGA-E2-A15A-01 11 46741275 46741275 C G F2 Missense_Mutation p.R35G 0.15 tolerated(0.21) benign(0.002) TCGA-E2-A15A-01 11 62502958 62502958 G A TTC9C Missense_Mutation p.G115R 0.14 deleterious(0) probably_damaging(0.999) TCGA-E2-A15A-01 11 63398771 63398771 T G ATL3 Missense_Mutation p.N427T 0.10 tolerated(0.06) benign(0.174) TCGA-E2-A15A-01 11 64699064 64699064 A G PPP2R5B Missense_Mutation p.T327A 0.08 deleterious(0.01) probably_damaging(0.937) TCGA-E2-A15A-01 11 66192244 66192244 A G NPAS4 Missense_Mutation p.E628G 0.49 deleterious(0) benign(0.062) TCGA-E2-A15A-01 11 7021109 7021109 C A ZNF214 Missense_Mutation p.R602I 0.11 deleterious(0.01) benign(0.001) TCGA-E2-A15A-01 11 8122413 8122413 C T TUB Missense_Mutation p.T474M 0.12 tolerated(1) benign(0.029) TCGA-E2-A15A-01 12 118619174 118619174 A C TAOK3 Splice_Site p.X522_splice 0.47 TCGA-E2-A15A-01 12 133733175 133733175 T - ZNF10 Frame_Shift_Del p.Y449Ifs*85 0.29 TCGA-E2-A15A-01 12 33538115 33538115 C T SYT10 Missense_Mutation p.G397S 0.16 deleterious(0.01) probably_damaging(1) TCGA-E2-A15A-01 14 33293893 33293893 G A AKAP6 Missense_Mutation p.A2292T 0.05 tolerated_low_confidence(0.13) benign(0.054) TCGA-E2-A15A-01 15 27726029 27726029 C G GABRG3 Intron 0.11 TCGA-E2-A15A-01 16 70503225 70503225 G A FUK Missense_Mutation p.M318I 0.10 tolerated(0.06) benign(0.063) TCGA-E2-A15A-01 16 89702958 89702958 C T DPEP1 Missense_Mutation p.R130W 0.56 deleterious(0) possibly_damaging(0.783) TCGA-E2-A15A-01 17 74902269 74902269 G A MGAT5B Missense_Mutation p.S353N 0.17 tolerated(0.15) possibly_damaging(0.772) TCGA-E2-A15A-01 19 12223794 12223794 C A ZNF788 Missense_Mutation p.Q478K 0.06 deleterious(0.02) benign(0.022) TCGA-E2-A15A-01 19 15559079 15559079 G C WIZ Missense_Mutation p.R14G 0.71 deleterious_low_confidence(0.01) benign(0.012) TCGA-E2-A15A-01 19 17316911 17316911 A G MYO9B Missense_Mutation p.K1736R 0.10 deleterious(0) probably_damaging(0.999) TCGA-E2-A15A-01 19 49184077 49184077 C T RN7SL345P 5'Flank 0.30 TCGA-E2-A15A-01 19 49920669 49920669 C A CCDC155 Missense_Mutation p.L531M 0.18 deleterious_low_confidence(0.02) probably_damaging(0.973) TCGA-E2-A15A-01 1 158687007 158687007 A T OR6K3 Missense_Mutation p.I300N 0.03 deleterious(0) possibly_damaging(0.881) TCGA-E2-A15A-01 1 16464453 16464453 C T EPHA2 Missense_Mutation p.E403K 0.12 tolerated(0.83) benign(0.143) TCGA-E2-A15A-01 1 220359016 220359016 A G RAB3GAP2 Missense_Mutation p.L616S 0.18 deleterious(0.02) benign(0.033) TCGA-E2-A15A-01 1 248512348 248512348 C A OR14C36 Missense_Mutation p.S91Y 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-E2-A15A-01 20 34061226 34061226 C G CEP250 Missense_Mutation p.Q413E 0.16 probably_damaging(0.995) TCGA-E2-A15A-01 21 28214903 28214903 G A ADAMTS1 Silent p.L278L 0.26 TCGA-E2-A15A-01 21 37618234 37618234 G A DOPEY2 Missense_Mutation p.C1319Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-E2-A15A-01 2 166854657 166854657 C T SCN1A Missense_Mutation p.S1456N 0.20 tolerated(1) benign(0.003) TCGA-E2-A15A-01 2 174131293 174131293 C T MLTK Missense_Mutation p.P740S 0.11 deleterious_low_confidence(0.02) benign(0.004) TCGA-E2-A15A-01 2 179588217 179588217 T G TTN Missense_Mutation p.S7204R 0.03 TCGA-E2-A15A-01 2 46207466 46207466 C T PRKCE Silent p.H213H 0.13 TCGA-E2-A15A-01 3 58413894 58413894 T G PDHB Missense_Mutation p.N316T 0.55 deleterious(0.01) benign(0.148) TCGA-E2-A15A-01 4 115754845 115754845 C T NDST4 Silent p.L771L 0.09 TCGA-E2-A15A-01 4 146467923 146467923 C A SMAD1 Missense_Mutation p.R282S 0.05 deleterious(0) probably_damaging(0.98) TCGA-E2-A15A-01 4 155156678 155156678 C A DCHS2 Silent p.V2587V 0.04 TCGA-E2-A15A-01 4 183594188 183594188 A G TENM3 Missense_Mutation p.N381S 0.05 tolerated(1) benign(0.292) TCGA-E2-A15A-01 5 107216863 107216863 G A FBXL17 Nonsense_Mutation p.R614* 0.28 TCGA-E2-A15A-01 5 149212759 149212759 C T PPARGC1B Missense_Mutation p.P375S 0.20 tolerated(0.24) benign(0.008) TCGA-E2-A15A-01 5 167626024 167626024 G C TENM2 Missense_Mutation p.G1023R 0.46 deleterious(0) probably_damaging(1) TCGA-E2-A15A-01 5 175782743 175782743 G C KIAA1191 Missense_Mutation p.A13G 0.14 tolerated(0.59) benign(0.009) TCGA-E2-A15A-01 5 24491905 24491906 - T CDH10 Frame_Shift_Ins p.N552Kfs*5 0.17 TCGA-E2-A15A-01 5 39289024 39289024 C A C9 Silent p.V482V 0.10 TCGA-E2-A15A-01 5 85582741 85582741 G C NBPF22P RNA 0.61 TCGA-E2-A15A-01 5 90052933 90052933 A C GPR98 Missense_Mutation p.E3965D 0.14 probably_damaging(0.973) TCGA-E2-A15A-01 6 119345581 119345581 G T FAM184A Missense_Mutation p.A186E 0.19 deleterious(0) probably_damaging(0.992) TCGA-E2-A15A-01 6 564578 564578 C A EXOC2 Missense_Mutation p.G545V 0.21 tolerated(0.08) probably_damaging(0.994) TCGA-E2-A15A-01 7 108155517 108155517 G C PNPLA8 Missense_Mutation p.S140W 0.13 deleterious_low_confidence(0) possibly_damaging(0.592) TCGA-E2-A15A-01 7 150648593 150648593 C T KCNH2 Missense_Mutation p.V630I 0.40 deleterious(0.01) probably_damaging(0.937) TCGA-E2-A15A-01 8 145004699 145004699 C T PLEC Silent p.E907E 0.10 TCGA-E2-A15A-01 8 41399367 41399367 T A GINS4 Missense_Mutation p.V175E 0.03 deleterious(0) probably_damaging(0.987) TCGA-E2-A15A-01 9 127781175 127781175 C T SCAI Missense_Mutation p.R278H 0.19 deleterious(0) probably_damaging(0.992) TCGA-E2-A15A-01 9 134362560 134362560 G A PRRC2B Missense_Mutation p.A1955T 0.16 tolerated(0.1) benign(0.021) TCGA-E2-A15A-01 9 139642884 139642884 C T LCN6 Missense_Mutation p.A18T 0.28 tolerated(0.09) benign(0.01) TCGA-E2-A15A-01 9 80030965 80030965 G T VPS13A 3'UTR 0.27 TCGA-E2-A15A-01 9 8500901 8500901 C A PTPRD Nonsense_Mutation p.E661* 0.15 TCGA-E2-A15A-01 9 88211299 88211299 C A AGTPBP1 Missense_Mutation p.G761W 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A15A-01 X 153715914 153715914 C T SLC10A3 Missense_Mutation p.G456S 0.27 tolerated(1) benign(0.426) TCGA-E2-A15A-01 X 46887292 46887292 A - JADE3 Splice_Site p.X159_splice 0.27 TCGA-E2-A15A-01 X 54224848 54224848 G A WNK3 Missense_Mutation p.S1771F 0.25 deleterious_low_confidence(0.03) benign(0.03) TCGA-E2-A15A-01 X 54324649 54324649 T A WNK3 Missense_Mutation p.N453Y 0.03 deleterious(0) probably_damaging(0.998) TCGA-E2-A15A-01 X 71359966 71359968 AGA - NHSL2 In_Frame_Del p.E858del 0.11 TCGA-E2-A15C-01 11 111571640 111571640 G A SIK2 Missense_Mutation p.G170D 0.05 deleterious(0.03) probably_damaging(0.997) TCGA-E2-A15C-01 11 64981401 64981401 C T CAPN1 3'Flank 0.39 TCGA-E2-A15C-01 11 65810935 65810935 C T GAL3ST3 Silent p.A113A 0.32 TCGA-E2-A15C-01 11 67200919 67200919 G T RPS6KB2 Splice_Site p.X302_splice 0.35 TCGA-E2-A15C-01 11 7817592 7817592 C T OR5P2 Missense_Mutation p.E300K 0.27 tolerated(0.54) benign(0.002) TCGA-E2-A15C-01 12 49228171 49228171 G A DDX23 Missense_Mutation p.R498C 0.33 deleterious(0) probably_damaging(0.982) TCGA-E2-A15C-01 13 25672268 25672268 C T PABPC3 3'UTR 0.18 TCGA-E2-A15C-01 14 105236677 105236677 C T AKT1 3'UTR 0.52 TCGA-E2-A15C-01 15 66257398 66257398 G A MEGF11 Silent p.C320C 0.37 TCGA-E2-A15C-01 15 90213364 90213364 C T PLIN1 Missense_Mutation p.G149R 0.29 deleterious(0) possibly_damaging(0.81) TCGA-E2-A15C-01 15 91341520 91341520 G A BLM Missense_Mutation p.G1104D 0.03 deleterious(0.02) possibly_damaging(0.493) TCGA-E2-A15C-01 16 29818987 29818987 T A MAZ Missense_Mutation p.L294Q 0.09 deleterious(0.01) benign(0.029) TCGA-E2-A15C-01 16 67063655 67063655 G C CBFB Missense_Mutation p.R35P 0.50 deleterious(0) probably_damaging(0.997) TCGA-E2-A15C-01 16 87367507 87367507 C - FBXO31 Frame_Shift_Del p.R461Qfs*43 0.30 TCGA-E2-A15C-01 18 28935165 28935165 C T DSG1 Silent p.G1002G 0.03 TCGA-E2-A15C-01 18 44555164 44555164 G A TCEB3C Silent p.D350D 0.04 TCGA-E2-A15C-01 19 11129678 11129678 C G SMARCA4 Silent p.S828S 0.33 TCGA-E2-A15C-01 19 1585064 1585064 T C MBD3 Missense_Mutation p.N87S 0.29 tolerated(0.61) benign(0.01) TCGA-E2-A15C-01 19 49507653 49507653 G A RUVBL2 Silent p.T81T 0.31 TCGA-E2-A15C-01 1 155288183 155288183 C T FDPS Intron 0.07 TCGA-E2-A15C-01 1 158687011 158687011 C T OR6K3 Missense_Mutation p.A299T 0.03 deleterious(0.03) possibly_damaging(0.45) TCGA-E2-A15C-01 1 236907962 236907962 C T ACTN2 Missense_Mutation p.S431L 0.18 deleterious(0.04) possibly_damaging(0.475) TCGA-E2-A15C-01 1 249210807 249210807 C G PGBD2 Silent p.V8V 0.38 TCGA-E2-A15C-01 22 17680545 17680545 C T CECR1 Intron 0.10 TCGA-E2-A15C-01 22 29445672 29445672 G A ZNRF3 Silent p.P501P 0.64 TCGA-E2-A15C-01 2 166788288 166788289 - A TTC21B Frame_Shift_Ins p.T292Yfs*11 0.34 TCGA-E2-A15C-01 2 208442363 208442363 C T CREB1 Missense_Mutation p.R289C 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A15C-01 2 219211330 219211330 A G PNKD 3'UTR 0.31 TCGA-E2-A15C-01 2 226447270 226447270 G A NYAP2 Silent p.S379S 0.35 TCGA-E2-A15C-01 2 233708862 233708862 C T GIGYF2 Missense_Mutation p.T1020M 0.32 unknown(0) TCGA-E2-A15C-01 2 71894557 71894557 C T DYSF Missense_Mutation p.A1790V 0.11 deleterious(0) probably_damaging(0.959) TCGA-E2-A15C-01 3 126062602 126062602 G A KLF15 Missense_Mutation p.R407W 0.33 deleterious(0) possibly_damaging(0.876) TCGA-E2-A15C-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A15C-01 4 119204223 119204223 A G PRSS12 Missense_Mutation p.Y695H 0.03 deleterious(0.05) possibly_damaging(0.861) TCGA-E2-A15C-01 4 184366704 184366704 A T CDKN2AIP Missense_Mutation p.M97L 0.04 deleterious(0.01) unknown(0) TCGA-E2-A15C-01 4 90833166 90833166 G T MMRN1 Missense_Mutation p.C272F 0.32 deleterious(0) probably_damaging(1) TCGA-E2-A15C-01 5 140573470 140573470 C T PCDHB10 Missense_Mutation p.P449S 0.24 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-E2-A15C-01 5 56161239 56161240 - CT MAP3K1 Frame_Shift_Ins p.S371Lfs*11 0.29 TCGA-E2-A15C-01 6 123539854 123539854 C G TRDN Missense_Mutation p.L694F 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-E2-A15C-01 6 74190485 74190485 G A MTO1 Missense_Mutation p.G406E 0.15 deleterious(0) probably_damaging(0.995) TCGA-E2-A15C-01 7 38431426 38431426 G T AMPH Missense_Mutation p.P601T 0.27 tolerated(0.69) benign(0.024) TCGA-E2-A15C-01 7 50673033 50673033 G A GRB10 Missense_Mutation p.P448L 0.28 deleterious(0.02) benign(0.323) TCGA-E2-A15C-01 7 53103484 53103484 C G POM121L12 Silent p.P40P 0.44 TCGA-E2-A15C-01 7 63774395 63774395 G T ZNF736 5'Flank 0.24 TCGA-E2-A15C-01 8 145618957 145618957 C T CPSF1 Missense_Mutation p.R1357Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-E2-A15C-01 8 95942683 95942683 A G TP53INP1 3'UTR 0.05 TCGA-E2-A15C-01 9 131860626 131860626 G A CRAT Silent p.T410T 0.10 TCGA-E2-A15C-01 9 8341168 8341168 G A PTPRD Missense_Mutation p.S1683F 0.26 tolerated(0.09) probably_damaging(0.998) TCGA-E2-A15C-01 X 153222202 153222202 C A HCFC1 Missense_Mutation p.G837W 0.27 deleterious(0) probably_damaging(0.999) TCGA-E2-A15C-01 X 18944633 18944633 G A PHKA2 Missense_Mutation p.A466V 0.40 deleterious(0.03) benign(0.097) TCGA-E2-A15C-01 X 44703713 44703713 G A DUSP21 Missense_Mutation p.R112H 0.10 tolerated(0.05) probably_damaging(0.985) TCGA-E2-A15C-01 X 78426998 78426998 G T GPR174 Missense_Mutation p.R165M 0.34 tolerated(0.13) benign(0.007) TCGA-E2-A15C-01 X 84329287 84329287 C A APOOL Missense_Mutation p.S203Y 0.04 deleterious(0.04) benign(0.304) TCGA-E2-A15D-01 10 8115701 8115701 G C GATA3 Splice_Site p.X351_splice 0.28 TCGA-E2-A15D-01 11 7949941 7949942 - T OR10A6 Frame_Shift_Ins p.T90Nfs*22 0.10 TCGA-E2-A15D-01 12 116429370 116429370 C T MED13L Missense_Mutation p.S1130N 0.26 deleterious(0) unknown(0) TCGA-E2-A15D-01 12 122691041 122691042 AG - B3GNT4 Frame_Shift_Del p.S83* 0.09 TCGA-E2-A15D-01 12 53722021 53722021 G A SP7 Missense_Mutation p.A402V 0.19 tolerated(0.15) benign(0.021) TCGA-E2-A15D-01 12 9907274 9907274 G A CD69 Nonsense_Mutation p.R134* 0.11 TCGA-E2-A15D-01 13 28367816 28367816 C T GSX1 Missense_Mutation p.R176C 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A15D-01 13 77636761 77636761 C A MYCBP2 Missense_Mutation p.W4210C 0.25 probably_damaging(0.992) TCGA-E2-A15D-01 14 94088576 94088576 C A UNC79 Missense_Mutation p.S1489Y 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-E2-A15D-01 16 1812380 1812380 G A MAPK8IP3 Missense_Mutation p.R522H 0.04 deleterious(0) probably_damaging(0.999) TCGA-E2-A15D-01 16 69969793 69969793 C T WWP2 Missense_Mutation p.T627I 0.30 tolerated(0.13) possibly_damaging(0.9) TCGA-E2-A15D-01 17 74274115 74274115 C T QRICH2 Missense_Mutation p.R1525H 0.13 tolerated(0.09) benign(0.246) TCGA-E2-A15D-01 17 74570535 74570535 C T ST6GALNAC2 Silent p.L91L 0.14 TCGA-E2-A15D-01 19 41248333 41248333 C T C19orf54 3'UTR 0.30 TCGA-E2-A15D-01 1 156618525 156618525 G A BCAN Missense_Mutation p.R312H 0.06 deleterious(0.02) probably_damaging(1) TCGA-E2-A15D-01 1 45974590 45974590 T A MMACHC Silent p.P184P 0.23 TCGA-E2-A15D-01 1 68624888 68624888 C T WLS Missense_Mutation p.R139H 0.26 deleterious(0) probably_damaging(0.99) TCGA-E2-A15D-01 2 61622023 61622023 G T USP34 Missense_Mutation p.L240I 0.22 tolerated(0.07) benign(0.021) TCGA-E2-A15D-01 2 79350038 79350038 T C REG1A Silent p.S131S 0.26 TCGA-E2-A15D-01 3 60522632 60522632 A G FHIT Missense_Mutation p.S22P 0.30 deleterious(0) probably_damaging(0.978) TCGA-E2-A15D-01 4 79432509 79432509 A - FRAS1 Frame_Shift_Del p.T3288Pfs*3 0.23 TCGA-E2-A15D-01 4 8217920 8217920 C T SH3TC1 Silent p.A188A 0.24 TCGA-E2-A15D-01 5 140502961 140502961 G A PCDHB4 Missense_Mutation p.E461K 0.08 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-E2-A15D-01 6 106547367 106547367 C T PRDM1 Missense_Mutation p.R202W 0.33 deleterious(0.01) possibly_damaging(0.817) TCGA-E2-A15D-01 6 151766672 151766672 T C RMND1 Missense_Mutation p.K92R 0.26 tolerated(0.29) benign(0.002) TCGA-E2-A15D-01 6 166779514 166779514 C T MPC1 Missense_Mutation p.A85T 0.28 tolerated(0.36) benign(0.094) TCGA-E2-A15D-01 6 38793935 38793935 C T DNAH8 Missense_Mutation p.P1067L 0.07 benign(0.009) TCGA-E2-A15D-01 6 43153245 43153245 A C CUL9 Missense_Mutation p.Q216P 0.27 deleterious(0) probably_damaging(0.985) TCGA-E2-A15D-01 7 100677246 100677246 C T MUC17 Missense_Mutation p.A850V 0.12 unknown(0) TCGA-E2-A15D-01 7 138235823 138235823 C T TRIM24 Missense_Mutation p.R387W 0.03 deleterious(0) possibly_damaging(0.776) TCGA-E2-A15D-01 7 2418800 2418800 A G EIF3B Missense_Mutation p.E755G 0.21 deleterious(0) benign(0.106) TCGA-E2-A15D-01 7 94928119 94928119 A G PON1 3'UTR 0.50 TCGA-E2-A15D-01 8 116426295 116426295 T C TRPS1 Missense_Mutation p.R1281G 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-E2-A15D-01 9 138454702 138454702 A G PAEP Silent p.G91G 0.31 TCGA-E2-A15D-01 9 37354798 37354798 A G ZCCHC7 Missense_Mutation p.K392R 0.32 tolerated(0.47) benign(0.001) TCGA-E2-A15D-01 X 153581667 153581667 C T FLNA Missense_Mutation p.V2007M 0.04 tolerated(0.08) possibly_damaging(0.788) TCGA-E2-A15D-01 X 55028014 55028014 G A APEX2 Missense_Mutation p.G65S 0.24 deleterious(0) probably_damaging(0.999) TCGA-E2-A15E-01 11 128443000 128443000 C T ETS1 Missense_Mutation p.G9E 0.23 deleterious_low_confidence(0.04) benign(0) TCGA-E2-A15E-01 11 78468030 78468030 A C TENM4 Missense_Mutation p.L859R 0.06 tolerated(0.46) possibly_damaging(0.866) TCGA-E2-A15E-01 11 85961453 85961453 A G EED Missense_Mutation p.K77R 0.15 tolerated(0.18) benign(0.017) TCGA-E2-A15E-01 12 13906449 13906449 G A GRIN2B Missense_Mutation p.A271V 0.36 tolerated(0.17) benign(0.058) TCGA-E2-A15E-01 12 54448874 54448874 C T HOXC4 Missense_Mutation p.P227L 0.14 deleterious(0.03) benign(0.083) TCGA-E2-A15E-01 13 36700191 36700191 G A DCLK1 Silent p.N28N 0.24 TCGA-E2-A15E-01 14 81382827 81382827 G T CEP128 Missense_Mutation p.A22D 0.26 deleterious(0.04) benign(0.206) TCGA-E2-A15E-01 15 42032290 42032290 C T MGA Missense_Mutation p.R1492C 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-E2-A15E-01 15 42455846 42455846 T C VPS39 Missense_Mutation p.K703E 0.04 tolerated(0.15) benign(0.069) TCGA-E2-A15E-01 17 10346782 10346782 G T MYH4 Silent p.A1910A 0.19 TCGA-E2-A15E-01 17 42929146 42929146 G A EFTUD2 Missense_Mutation p.R919C 0.51 deleterious(0) probably_damaging(0.953) TCGA-E2-A15E-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.29 deleterious(0) probably_damaging(1) TCGA-E2-A15E-01 17 9680524 9680524 G A DHRS7C Missense_Mutation p.P187L 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A15E-01 19 50885244 50885244 A T NR1H2 Missense_Mutation p.N350I 0.18 deleterious(0) probably_damaging(0.964) TCGA-E2-A15E-01 19 51728686 51728686 G C CD33 Missense_Mutation p.E84Q 0.06 deleterious(0.01) benign(0.048) TCGA-E2-A15E-01 1 110086562 110086562 C T GPR61 Silent p.F306F 0.15 TCGA-E2-A15E-01 1 168260440 168260440 C A TBX19 Missense_Mutation p.D82E 0.05 tolerated(0.09) probably_damaging(0.997) TCGA-E2-A15E-01 1 184023924 184023924 G T TSEN15 Missense_Mutation p.G94C 0.13 deleterious(0) probably_damaging(1) TCGA-E2-A15E-01 1 203152855 203152855 G C CHI3L1 Missense_Mutation p.L127V 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A15E-01 1 2103803 2103803 G A PRKCZ Missense_Mutation p.E421K 0.13 deleterious(0) probably_damaging(0.999) TCGA-E2-A15E-01 1 236883433 236883433 C A ACTN2 Silent p.T130T 0.11 TCGA-E2-A15E-01 1 2430566 2430566 C T PLCH2 Silent p.H799H 0.23 TCGA-E2-A15E-01 1 40235997 40235997 C G OXCT2 Missense_Mutation p.E311Q 0.05 tolerated(0.22) benign(0.009) TCGA-E2-A15E-01 21 33765616 33765616 G C C21orf119 Missense_Mutation p.A29P 0.20 possibly_damaging(0.826) TCGA-E2-A15E-01 21 38884440 38884440 A G DYRK1A Missense_Mutation p.Y633C 0.32 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-E2-A15E-01 21 39086565 39086565 T C KCNJ6 Missense_Mutation p.K299E 0.23 tolerated(0.16) benign(0.029) TCGA-E2-A15E-01 3 13860785 13860785 C T WNT7A Missense_Mutation p.V236I 0.21 tolerated(0.11) benign(0.052) TCGA-E2-A15E-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.50 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A15E-01 3 185960291 185960291 A G DGKG Splice_Site p.X609_splice 0.20 TCGA-E2-A15E-01 3 9594129 9594129 C G LHFPL4 Missense_Mutation p.G79R 0.31 deleterious(0) probably_damaging(0.997) TCGA-E2-A15E-01 4 860994 860994 A G GAK Silent p.P874P 0.30 TCGA-E2-A15E-01 5 140167773 140167773 C T PCDHA1 Missense_Mutation p.T633M 0.11 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-E2-A15E-01 5 140741005 140741005 A G PCDHGB2 Missense_Mutation p.S435G 0.27 deleterious(0.02) possibly_damaging(0.672) TCGA-E2-A15E-01 6 29974759 29974759 C T ZNRD1-AS1 Intron 0.09 TCGA-E2-A15E-01 6 7570674 7570674 G A DSP Missense_Mutation p.E527K 0.16 possibly_damaging(0.724) TCGA-E2-A15E-01 8 30695338 30695338 C G TEX15 Missense_Mutation p.R2438T 0.30 tolerated(0.18) benign(0.009) TCGA-E2-A15E-01 8 30695359 30695359 T - TEX15 Frame_Shift_Del p.N2431Ifs*2 0.29 TCGA-E2-A15E-01 8 30695447 30695447 C G TEX15 Missense_Mutation p.E2402Q 0.29 tolerated(0.14) benign(0.053) TCGA-E2-A15E-01 8 30695512 30695512 C A TEX15 Missense_Mutation p.R2380I 0.30 deleterious(0) probably_damaging(0.967) TCGA-E2-A15E-01 X 118145876 118145876 G A LONRF3 Missense_Mutation p.R584H 0.04 deleterious(0) probably_damaging(1) TCGA-E2-A15E-01 X 9905362 9905362 G A SHROOM2 Missense_Mutation p.R1259H 0.16 tolerated(0.07) probably_damaging(0.98) TCGA-E2-A15F-01 10 118313248 118313248 G A PNLIP Missense_Mutation p.G157S 0.24 tolerated(0.24) benign(0.028) TCGA-E2-A15F-01 10 38120662 38120662 T C ZNF248 Missense_Mutation p.T541A 0.05 tolerated(0.11) benign(0.298) TCGA-E2-A15F-01 10 70748750 70748750 T C KIAA1279 Silent p.P54P 0.29 TCGA-E2-A15F-01 11 18568489 18568489 G C UEVLD Missense_Mutation p.A275G 0.31 tolerated(0.75) benign(0.34) TCGA-E2-A15F-01 11 26584710 26584710 G A MUC15 Missense_Mutation p.T293M 0.28 tolerated(0.06) benign(0.011) TCGA-E2-A15F-01 11 36615502 36615502 G A RAG2 Missense_Mutation p.R73C 0.21 deleterious(0) benign(0.005) TCGA-E2-A15F-01 11 95724818 95724818 T G MAML2 Missense_Mutation p.T737P 0.06 unknown(0) TCGA-E2-A15F-01 14 31388247 31388247 G C STRN3 Missense_Mutation p.P389A 0.46 tolerated(0.14) benign(0.011) TCGA-E2-A15F-01 16 15128373 15128373 G - PDXDC1 Frame_Shift_Del p.A656Lfs*10 0.30 TCGA-E2-A15F-01 17 19607404 19607404 C T SLC47A2 Missense_Mutation p.V369I 0.37 tolerated(0.82) benign(0.007) TCGA-E2-A15F-01 19 19681029 19681029 A G PBX4 Missense_Mutation p.I174T 0.22 deleterious(0.03) possibly_damaging(0.612) TCGA-E2-A15F-01 19 37118529 37118529 C T ZNF382 3'UTR 0.12 TCGA-E2-A15F-01 1 118624202 118624202 A C SPAG17 Missense_Mutation p.L609R 0.07 deleterious(0) probably_damaging(1) TCGA-E2-A15F-01 1 249107351 249107351 G A SH3BP5L Missense_Mutation p.A183V 0.13 deleterious(0) probably_damaging(0.948) TCGA-E2-A15F-01 1 41296807 41296807 G A KCNQ4 Silent p.R448R 0.25 TCGA-E2-A15F-01 1 75202299 75202299 A T TYW3 Missense_Mutation p.D83V 0.19 deleterious(0.01) benign(0.411) TCGA-E2-A15F-01 20 11899208 11899208 G A BTBD3 Silent p.P95P 0.09 TCGA-E2-A15F-01 20 34451109 34451109 A G PHF20 Missense_Mutation p.K199E 0.04 deleterious(0.04) probably_damaging(0.996) TCGA-E2-A15F-01 21 37445117 37445117 G T CBR1 Missense_Mutation p.L257F 0.30 deleterious(0.01) probably_damaging(1) TCGA-E2-A15F-01 22 32162629 32162630 - T DEPDC5 Frame_Shift_Ins p.M114Yfs*30 0.10 TCGA-E2-A15F-01 22 50961526 50961526 C G NCAPH2 Silent p.P537P 0.07 TCGA-E2-A15F-01 3 108819313 108819313 G A MORC1 Missense_Mutation p.R89W 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-E2-A15F-01 3 122296675 122296675 C T PARP15 Missense_Mutation p.S54F 0.41 tolerated(0.51) benign(0) TCGA-E2-A15F-01 3 49050454 49050454 G A WDR6 Missense_Mutation p.C526Y 0.29 deleterious(0) probably_damaging(0.969) TCGA-E2-A15F-01 3 49050455 49050455 C T WDR6 Silent p.C526C 0.28 TCGA-E2-A15F-01 3 49455277 49455277 A T AMT Missense_Mutation p.I336N 0.33 deleterious(0) probably_damaging(0.989) TCGA-E2-A15F-01 5 139862242 139862243 - A ANKHD1 Frame_Shift_Ins p.I621Nfs*2 0.28 TCGA-E2-A15F-01 7 150648711 150648711 G A KCNH2 Silent p.G590G 0.07 TCGA-E2-A15F-01 7 27134229 27134229 G A HOXA1 Missense_Mutation p.R280C 0.29 deleterious(0) probably_damaging(0.988) TCGA-E2-A15F-01 7 42957401 42957401 A T PSMA2 Silent p.I188I 0.04 TCGA-E2-A15F-01 8 36662741 36662741 G C KCNU1 Missense_Mutation p.D136H 0.59 deleterious(0) probably_damaging(0.981) TCGA-E2-A15G-01 10 8006835 8006835 C G TAF3 Silent p.S454S 0.31 TCGA-E2-A15G-01 10 91198855 91198855 G A SLC16A12 Silent p.I178I 0.15 TCGA-E2-A15G-01 10 99502856 99502856 A - ZFYVE27 Frame_Shift_Del p.Q68Rfs*8 0.20 TCGA-E2-A15G-01 11 65396838 65396838 G A PCNXL3 Missense_Mutation p.V1318M 0.37 deleterious(0.02) probably_damaging(0.923) TCGA-E2-A15G-01 11 67259748 67259748 A G PITPNM1 Missense_Mutation p.V1164A 0.11 tolerated(1) benign(0.023) TCGA-E2-A15G-01 11 69588113 69588113 G T FGF4 Silent p.P195P 0.20 TCGA-E2-A15G-01 11 93097377 93097377 C T CCDC67 Nonsense_Mutation p.Q117* 0.33 TCGA-E2-A15G-01 11 9989966 9989966 T A SBF2 Missense_Mutation p.N508Y 0.16 deleterious(0) benign(0.089) TCGA-E2-A15G-01 12 106824180 106824180 G A POLR3B Missense_Mutation p.V465M 0.17 deleterious(0.01) possibly_damaging(0.861) TCGA-E2-A15G-01 12 110566885 110566885 G A IFT81 Missense_Mutation p.V127I 0.34 tolerated(0.37) benign(0.444) TCGA-E2-A15G-01 12 118590144 118590144 A G TAOK3 Missense_Mutation p.L808P 0.22 deleterious(0) probably_damaging(0.993) TCGA-E2-A15G-01 12 44180307 44180307 G T IRAK4 Missense_Mutation p.V432F 0.18 deleterious(0.02) possibly_damaging(0.807) TCGA-E2-A15G-01 13 101756927 101756927 A T NALCN Missense_Mutation p.M904K 0.20 deleterious(0) possibly_damaging(0.696) TCGA-E2-A15G-01 13 111274599 111274599 C T CARKD Missense_Mutation p.S46L 0.22 tolerated(0.15) benign(0.032) TCGA-E2-A15G-01 14 102452485 102452486 - C DYNC1H1 Frame_Shift_Ins p.V644Cfs*9 0.12 TCGA-E2-A15G-01 14 24529250 24529250 G A LRRC16B Missense_Mutation p.R647H 0.09 deleterious(0.04) benign(0.087) TCGA-E2-A15G-01 15 101910696 101910696 G A PCSK6 Missense_Mutation p.T521M 0.13 tolerated(0.15) benign(0.344) TCGA-E2-A15G-01 15 31295003 31295003 G A TRPM1 Silent p.N1317N 0.18 TCGA-E2-A15G-01 15 63102180 63102180 C T TLN2 Silent p.F2240F 0.13 TCGA-E2-A15G-01 15 63970199 63970199 G C HERC1 Silent p.P2305P 0.18 TCGA-E2-A15G-01 15 81176528 81176528 T C KIAA1199 Silent p.Y210Y 0.24 TCGA-E2-A15G-01 15 91436887 91436887 C A FES Missense_Mutation p.D683E 0.24 deleterious(0) probably_damaging(0.946) TCGA-E2-A15G-01 16 72830186 72830186 T C ZFHX3 Missense_Mutation p.Y2132C 0.31 probably_damaging(0.993) TCGA-E2-A15G-01 16 88747790 88747790 C T SNAI3 Missense_Mutation p.E137K 0.31 deleterious(0.03) benign(0.292) TCGA-E2-A15G-01 17 10213133 10213133 G A MYH13 Silent p.H1557H 0.15 TCGA-E2-A15G-01 17 5072218 5072218 G A USP6 Missense_Mutation p.E1129K 0.19 tolerated_low_confidence(0.25) possibly_damaging(0.626) TCGA-E2-A15G-01 17 7145570 7145570 T C GABARAP Missense_Mutation p.D27G 0.22 deleterious(0.02) benign(0.028) TCGA-E2-A15G-01 18 59167643 59167643 C A CDH20 Missense_Mutation p.T190K 0.17 deleterious(0) probably_damaging(0.996) TCGA-E2-A15G-01 19 2041144 2041144 G T MKNK2 Silent p.A335A 0.20 TCGA-E2-A15G-01 19 3750649 3750649 C T TJP3 Silent p.D918D 0.36 TCGA-E2-A15G-01 19 50939058 50939058 G A MYBPC2 Silent p.P45P 0.20 TCGA-E2-A15G-01 19 50964798 50964798 G A MYBPC2 Splice_Site p.X978_splice 0.35 TCGA-E2-A15G-01 19 6480063 6480063 C T DENND1C Splice_Site p.X6_splice 0.21 TCGA-E2-A15G-01 1 155988059 155988065 ACGGGGC - SSR2 Splice_Site p.X84_splice 0.25 TCGA-E2-A15G-01 1 171251383 171251383 C A FMO1 Missense_Mutation p.T365N 0.15 deleterious(0) probably_damaging(0.997) TCGA-E2-A15G-01 1 234519482 234519482 A T COA6 Missense_Mutation p.D99V 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-E2-A15G-01 1 48703432 48703432 C A SLC5A9 Missense_Mutation p.D483E 0.20 tolerated(0.36) benign(0.084) TCGA-E2-A15G-01 1 78481910 78481910 G A DNAJB4 Silent p.R331R 0.14 TCGA-E2-A15G-01 20 4713295 4713296 - A PRNT Frame_Shift_Ins p.A10Cfs*25 0.21 TCGA-E2-A15G-01 21 45217847 45217847 C T RRP1 Missense_Mutation p.P226L 0.36 deleterious(0) probably_damaging(0.992) TCGA-E2-A15G-01 21 48022307 48022307 T C S100B Missense_Mutation p.M8V 0.32 deleterious(0.04) benign(0.001) TCGA-E2-A15G-01 22 23264956 23264956 C A IGLC7 Missense_Mutation p.N64K 0.22 deleterious_low_confidence(0) benign(0.018) TCGA-E2-A15G-01 2 179730515 179730515 G A CCDC141 Silent p.A901A 0.16 TCGA-E2-A15G-01 2 220405780 220405780 C T CHPF Missense_Mutation p.R319Q 0.18 tolerated(0.79) benign(0.015) TCGA-E2-A15G-01 2 39025511 39025511 A G DHX57 Missense_Mutation p.I1364T 0.04 deleterious(0.03) benign(0.002) TCGA-E2-A15G-01 2 71913698 71913698 G A DYSF 3'UTR 0.21 TCGA-E2-A15G-01 2 86832076 86832076 C T RNF103 Silent p.L316L 0.15 TCGA-E2-A15G-01 3 101395420 101395420 C T ZBTB11 Intron 0.23 TCGA-E2-A15G-01 3 128707653 128707653 A G KIAA1257 Missense_Mutation p.L124P 0.15 deleterious(0) probably_damaging(0.997) TCGA-E2-A15G-01 3 176744190 176744190 T A TBL1XR1 Nonsense_Mutation p.K497* 0.15 TCGA-E2-A15G-01 3 176771659 176771659 G A TBL1XR1 Nonsense_Mutation p.Q36* 0.17 TCGA-E2-A15G-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.51 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A15G-01 3 187451419 187451419 G C BCL6 Missense_Mutation p.N21K 0.13 deleterious(0) probably_damaging(1) TCGA-E2-A15G-01 3 50369249 50369249 C G RASSF1 Missense_Mutation p.Q171H 0.09 tolerated(1) benign(0.103) TCGA-E2-A15G-01 3 67054333 67054333 G A KBTBD8 Silent p.V314V 0.16 TCGA-E2-A15G-01 3 77623847 77623847 T G ROBO2 Missense_Mutation p.D739E 0.30 tolerated(0.22) benign(0.335) TCGA-E2-A15G-01 3 9027246 9027246 T C SRGAP3 Missense_Mutation p.K1086R 0.19 tolerated_low_confidence(0.18) benign(0.004) TCGA-E2-A15G-01 4 139993126 139993126 G A ELF2 Silent p.V128V 0.07 TCGA-E2-A15G-01 4 96761984 96761984 G T PDHA2 Missense_Mutation p.G228V 0.13 deleterious(0) probably_damaging(1) TCGA-E2-A15G-01 5 38407953 38407953 G A EGFLAM Silent p.T398T 0.16 TCGA-E2-A15G-01 5 41159254 41159254 G A C6 Nonsense_Mutation p.R596* 0.18 TCGA-E2-A15G-01 5 5318312 5318312 G A ADAMTS16 Silent p.P1159P 0.17 TCGA-E2-A15G-01 5 56160565 56160565 A C MAP3K1 Missense_Mutation p.Q280P 0.14 deleterious_low_confidence(0) benign(0.013) TCGA-E2-A15G-01 5 56177598 56177598 G - MAP3K1 Frame_Shift_Del p.A858Lfs*16 0.26 TCGA-E2-A15G-01 5 82937208 82937208 A C HAPLN1 3'UTR 0.18 TCGA-E2-A15G-01 6 112397174 112397174 T C TUBE1 Missense_Mutation p.N260D 0.05 tolerated(0.09) benign(0.081) TCGA-E2-A15G-01 6 135511399 135511399 G A MYB Nonsense_Mutation p.W147* 0.21 TCGA-E2-A15G-01 6 151055039 151055039 G A PLEKHG1 Silent p.T74T 0.23 TCGA-E2-A15G-01 6 45922898 45922898 G A CLIC5 Silent p.F208F 0.05 TCGA-E2-A15G-01 6 88279250 88279250 G T RARS2 Missense_Mutation p.P32Q 0.16 deleterious(0.01) probably_damaging(0.916) TCGA-E2-A15G-01 7 32110056 32110056 C T PDE1C Intron 0.24 TCGA-E2-A15G-01 8 24251638 24251638 T A ADAMDEC1 Missense_Mutation p.I114N 0.05 deleterious(0) possibly_damaging(0.845) TCGA-E2-A15G-01 8 77764134 77764134 C A ZFHX4 Missense_Mutation p.N1659K 0.05 benign(0.004) TCGA-E2-A15G-01 8 97157010 97157010 G A GDF6 Silent p.C383C 0.20 TCGA-E2-A15G-01 9 139008534 139008534 A T C9orf69 Silent p.G71G 0.33 TCGA-E2-A15G-01 9 139888077 139888077 G A C9orf142 Missense_Mutation p.R179Q 0.22 deleterious(0.04) probably_damaging(0.946) TCGA-E2-A15G-01 X 123538961 123538961 G T TENM1 Missense_Mutation p.H1771N 0.05 tolerated(1) benign(0.002) TCGA-E2-A15G-01 X 135574435 135574435 G A BRS3 Silent p.V367V 0.14 TCGA-E2-A15H-01 10 8115851 8115852 - A GATA3 Frame_Shift_Ins p.M401Nfs*107 0.29 TCGA-E2-A15H-01 11 74651907 74651907 A C XRRA1 Missense_Mutation p.I6S 0.15 tolerated(0.08) benign(0.011) TCGA-E2-A15H-01 12 106461239 106461239 G A NUAK1 Missense_Mutation p.P443S 0.35 tolerated(0.74) benign(0.001) TCGA-E2-A15H-01 12 106995096 106995096 G A RFX4 Silent p.R14R 0.36 TCGA-E2-A15H-01 12 129558739 129558739 C - TMEM132D Frame_Shift_Del p.G994Afs*52 0.21 TCGA-E2-A15H-01 12 32778624 32778624 C T FGD4 Nonsense_Mutation p.R558* 0.29 TCGA-E2-A15H-01 12 58159205 58159205 G A CYP27B1 Missense_Mutation p.A155V 0.37 tolerated(0.06) benign(0.345) TCGA-E2-A15H-01 14 52485857 52485857 C T NID2 Missense_Mutation p.V984M 0.36 deleterious(0.03) probably_damaging(0.969) TCGA-E2-A15H-01 16 31073089 31073089 G A ZNF668 Missense_Mutation p.S410L 0.45 tolerated(0.05) benign(0.06) TCGA-E2-A15H-01 16 66884454 66884454 G A CA7 Silent p.G83G 0.56 TCGA-E2-A15H-01 17 38907557 38907557 C T KRT25 Missense_Mutation p.A231T 0.06 tolerated(0.27) benign(0.358) TCGA-E2-A15H-01 17 39134461 39134461 G A KRT40 Silent p.N428N 0.06 TCGA-E2-A15H-01 17 40180151 40180151 G A ZNF385C Missense_Mutation p.R362W 0.64 deleterious(0) possibly_damaging(0.614) TCGA-E2-A15H-01 17 77768618 77768618 C T CBX8 Missense_Mutation p.G329E 0.49 tolerated(0.18) probably_damaging(0.931) TCGA-E2-A15H-01 17 77768957 77768957 C T CBX8 Missense_Mutation p.G216D 0.45 tolerated(0.42) probably_damaging(0.931) TCGA-E2-A15H-01 1 228506817 228506817 G A OBSCN Silent p.T5745T 0.09 TCGA-E2-A15H-01 1 240969512 240969512 C A RGS7 Missense_Mutation p.L399F 0.12 deleterious(0) possibly_damaging(0.618) TCGA-E2-A15H-01 1 79115985 79115985 C A IFI44 Missense_Mutation p.F35L 0.16 tolerated(0.44) probably_damaging(0.982) TCGA-E2-A15H-01 20 60791587 60791587 C T HRH3 Silent p.P271P 0.54 TCGA-E2-A15H-01 22 41310322 41310322 A G XPNPEP3 Missense_Mutation p.N350S 0.47 tolerated(0.34) benign(0.044) TCGA-E2-A15H-01 22 45309833 45309833 T C PHF21B Missense_Mutation p.I234V 0.57 deleterious(0.05) benign(0.124) TCGA-E2-A15H-01 2 111416077 111416077 G C BUB1 Missense_Mutation p.Q476E 0.05 deleterious(0) probably_damaging(0.986) TCGA-E2-A15H-01 2 128522166 128522166 C T WDR33 Intron 0.38 TCGA-E2-A15H-01 2 131976471 131976471 G A POTEE Missense_Mutation p.V166M 0.21 tolerated_low_confidence(0.38) probably_damaging(0.971) TCGA-E2-A15H-01 2 163361010 163361010 G A KCNH7 Silent p.T357T 0.03 TCGA-E2-A15H-01 2 73303155 73303156 - G RAB11FIP5 Frame_Shift_Ins p.Q575Pfs*30 0.46 TCGA-E2-A15H-01 3 170784081 170784081 G A TNIK Silent p.G1298G 0.32 TCGA-E2-A15H-01 4 88584457 88584457 C - DMP1 Frame_Shift_Del p.Q510Kfs*22 0.21 TCGA-E2-A15H-01 6 144070161 144070161 A G PHACTR2 Missense_Mutation p.E85G 0.30 deleterious(0) probably_damaging(0.998) TCGA-E2-A15H-01 6 149862525 149862525 G A PPIL4 Missense_Mutation p.R61C 0.47 tolerated(0.08) benign(0.118) TCGA-E2-A15H-01 7 4153004 4153004 C A SDK1 Missense_Mutation p.P1173H 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A15H-01 7 74148311 74148311 C T GTF2I Missense_Mutation p.P451S 0.30 tolerated(0.16) benign(0.139) TCGA-E2-A15H-01 9 114170924 114170924 C A KIAA0368 Missense_Mutation p.G1038V 0.30 deleterious(0) probably_damaging(1) TCGA-E2-A15H-01 9 97873829 97873829 T C FANCC Silent p.A415A 0.34 TCGA-E2-A15H-01 X 129147755 129147755 C T BCORL1 Missense_Mutation p.P336L 0.45 unknown(0) TCGA-E2-A15H-01 X 39923040 39923040 G A BCOR Missense_Mutation p.S1223L 0.25 deleterious(0.04) benign(0.007) TCGA-E2-A15H-01 X 79990688 79990688 G C BRWD3 Missense_Mutation p.P308R 0.25 deleterious(0.03) probably_damaging(0.963) TCGA-E2-A15I-01 10 113932823 113932823 G T GPAM Missense_Mutation p.L188M 0.10 deleterious(0.02) possibly_damaging(0.84) TCGA-E2-A15I-01 10 37486216 37486216 C G ANKRD30A Silent p.P818P 0.48 TCGA-E2-A15I-01 11 121000388 121000388 G A TECTA Silent p.S803S 0.33 TCGA-E2-A15I-01 12 113307580 113307580 G A RPH3A Silent p.R209R 0.31 TCGA-E2-A15I-01 13 70281929 70281929 C T KLHL1 Splice_Site p.X672_splice 0.18 TCGA-E2-A15I-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.41 deleterious(0) probably_damaging(0.999) TCGA-E2-A15I-01 15 33923486 33923486 G T RYR3 Silent p.L953L 0.26 TCGA-E2-A15I-01 16 1817882 1817882 C T MAPK8IP3 Silent p.T1161T 0.05 TCGA-E2-A15I-01 16 2282496 2282496 C T E4F1 Missense_Mutation p.R217C 0.08 deleterious(0) probably_damaging(0.977) TCGA-E2-A15I-01 17 56332273 56332273 C T LPO Nonsense_Mutation p.Q403* 0.12 TCGA-E2-A15I-01 17 7217236 7217236 G - GPS2 Frame_Shift_Del p.Q157Kfs*188 0.27 TCGA-E2-A15I-01 19 15079203 15079203 G A SLC1A6 Missense_Mutation p.H154Y 0.06 deleterious(0) possibly_damaging(0.816) TCGA-E2-A15I-01 19 41092756 41092756 G T SHKBP1 Missense_Mutation p.E414D 0.32 deleterious(0) possibly_damaging(0.839) TCGA-E2-A15I-01 19 46627331 46627331 G A IGFL3 Silent p.C54C 0.23 TCGA-E2-A15I-01 1 16748588 16748588 C T SPATA21 Intron 0.32 TCGA-E2-A15I-01 1 197407734 197407734 C G CRB1 Nonsense_Mutation p.Y1269* 0.07 TCGA-E2-A15I-01 1 78478782 78478782 C T DNAJB4 Missense_Mutation p.R87W 0.10 deleterious(0.02) benign(0.031) TCGA-E2-A15I-01 20 30697494 30697494 C T TM9SF4 5'UTR 0.11 TCGA-E2-A15I-01 22 16267058 16267058 A T POTEH Missense_Mutation p.M464K 0.02 tolerated(0.06) benign(0.055) TCGA-E2-A15I-01 2 158977994 158977994 C T UPP2 Silent p.V233V 0.05 TCGA-E2-A15I-01 2 168115717 168115717 A G XIRP2 3'UTR 0.38 TCGA-E2-A15I-01 2 220144582 220144582 C T DNAJB2 Silent p.D9D 0.38 TCGA-E2-A15I-01 2 220503504 220503504 G A SLC4A3 Missense_Mutation p.R1006H 0.11 tolerated(0.08) benign(0.372) TCGA-E2-A15I-01 2 233399890 233399890 G - CHRND Frame_Shift_Del p.F475Lfs*3 0.56 TCGA-E2-A15I-01 3 57414077 57414077 T C DNAH12 Missense_Mutation p.Q1761R 0.28 tolerated(0.59) benign(0) TCGA-E2-A15I-01 3 63824082 63824082 T A THOC7 Missense_Mutation p.E77D 0.06 deleterious(0.01) probably_damaging(0.955) TCGA-E2-A15I-01 3 99513292 99513292 C A COL8A1 Missense_Mutation p.Q183K 0.06 tolerated(0.13) unknown(0) TCGA-E2-A15I-01 4 53610816 53610816 G A ERVMER34-1 Missense_Mutation p.S291F 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.683) TCGA-E2-A15I-01 5 11346513 11346513 C T CTNND2 Silent p.P533P 0.07 TCGA-E2-A15I-01 5 114611288 114611288 A G CCDC112 Silent p.I181I 0.33 TCGA-E2-A15I-01 5 149915315 149915315 C T NDST1 Silent p.G435G 0.30 TCGA-E2-A15I-01 5 161116743 161116743 A C GABRA6 Missense_Mutation p.I211L 0.28 tolerated(0.76) benign(0.012) TCGA-E2-A15I-01 5 33937028 33937028 G A RXFP3 Silent p.P61P 0.30 TCGA-E2-A15I-01 6 125598352 125598352 A T HDDC2 Missense_Mutation p.F138Y 0.26 tolerated(0.15) benign(0.012) TCGA-E2-A15I-01 7 100806954 100806954 C T VGF Missense_Mutation p.E391K 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-E2-A15I-01 7 102978101 102978101 G T DNAJC2 Intron 0.20 TCGA-E2-A15I-01 7 134878393 134878393 C T WDR91 Missense_Mutation p.R476H 0.03 deleterious(0) probably_damaging(0.994) TCGA-E2-A15I-01 7 86493622 86493622 C T GRM3 Missense_Mutation p.T864M 0.24 deleterious(0.04) probably_damaging(0.931) TCGA-E2-A15I-01 8 29963462 29963462 T A LEPROTL1 Intron 0.37 TCGA-E2-A15I-01 8 35588596 35588596 T G UNC5D Missense_Mutation p.I583S 0.03 deleterious(0) possibly_damaging(0.85) TCGA-E2-A15I-01 8 35588600 35588600 C A UNC5D Missense_Mutation p.N584K 0.04 deleterious(0.01) benign(0.243) TCGA-E2-A15I-01 X 151092941 151092941 C T MAGEA4 Missense_Mutation p.R269C 0.05 tolerated(0.08) benign(0.008) TCGA-E2-A15I-01 X 48762371 48762371 C A SLC35A2 Missense_Mutation p.W272L 0.39 deleterious(0.01) possibly_damaging(0.449) TCGA-E2-A15I-01 X 49050648 49050648 C T SYP Missense_Mutation p.R133Q 0.30 deleterious(0.03) possibly_damaging(0.888) TCGA-E2-A15I-01 X 50118036 50118036 G A DGKK RNA 0.06 TCGA-E2-A15J-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.37 TCGA-E2-A15J-01 11 205996 205996 G A BET1L Nonsense_Mutation p.R23* 0.40 TCGA-E2-A15J-01 11 6645350 6645350 G C DCHS1 Missense_Mutation p.D2519E 0.45 tolerated(0.07) probably_damaging(0.923) TCGA-E2-A15J-01 12 50156785 50156785 A - TMBIM6 3'UTR 0.32 TCGA-E2-A15J-01 12 57548459 57548459 G A LRP1 Missense_Mutation p.R401H 0.36 probably_damaging(0.952) TCGA-E2-A15J-01 12 8203193 8203193 A G FOXJ2 Missense_Mutation p.D538G 0.44 tolerated(0.08) possibly_damaging(0.493) TCGA-E2-A15J-01 14 94417514 94417514 G A ASB2 Silent p.R237R 0.55 TCGA-E2-A15J-01 15 68582869 68582869 T A FEM1B Silent p.V391V 0.44 TCGA-E2-A15J-01 16 31213061 31213061 G A PYCARD Nonsense_Mutation p.Q145* 0.62 TCGA-E2-A15J-01 17 16012215 16012227 TTTTCGTGAAGTC - NCOR1 Splice_Site p.X686_splice 0.87 TCGA-E2-A15J-01 17 55183677 55183677 G A AKAP1 Silent p.A284A 0.43 TCGA-E2-A15J-01 17 76803588 76803588 G A USP36 Missense_Mutation p.S513F 0.38 tolerated(0.1) benign(0.132) TCGA-E2-A15J-01 19 17945965 17945965 C T JAK3 Silent p.E658E 0.36 TCGA-E2-A15J-01 19 41113324 41113324 G A LTBP4 Missense_Mutation p.G416S 0.35 deleterious(0.04) probably_damaging(1) TCGA-E2-A15J-01 1 217783712 217783712 C A GPATCH2 Missense_Mutation p.G350V 0.66 deleterious(0) possibly_damaging(0.887) TCGA-E2-A15J-01 1 23637492 23637492 C A HNRNPR Missense_Mutation p.G456W 0.49 tolerated(0.12) unknown(0) TCGA-E2-A15J-01 1 6202309 6202309 G A CHD5 Missense_Mutation p.A772V 0.47 deleterious(0) probably_damaging(0.954) TCGA-E2-A15J-01 20 43255195 43255195 C T ADA Silent p.E88E 0.34 TCGA-E2-A15J-01 2 118860893 118860893 G A INSIG2 Missense_Mutation p.S122N 0.39 tolerated(0.07) benign(0.247) TCGA-E2-A15J-01 3 11684952 11684952 A T VGLL4 Nonsense_Mutation p.L14* 0.50 TCGA-E2-A15J-01 3 1414040 1414040 T C CNTN6 Missense_Mutation p.I517T 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A15J-01 3 99513227 99513227 G T COL8A1 Missense_Mutation p.G161V 0.39 deleterious(0) unknown(0) TCGA-E2-A15J-01 8 104948831 104948831 T G RIMS2 Missense_Mutation p.W810G 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-E2-A15J-01 9 136634607 136634607 T C VAV2 Missense_Mutation p.N789S 0.45 tolerated(0.36) benign(0.007) TCGA-E2-A15J-01 X 103080672 103080672 C A RAB9B Missense_Mutation p.D15Y 0.38 deleterious(0) probably_damaging(1) TCGA-E2-A15K-01 10 123258034 123258034 A T FGFR2 Missense_Mutation p.N550K 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A15K-01 10 73520397 73520397 C T C10orf54 Intron 0.28 TCGA-E2-A15K-01 11 118081378 118081378 C T AMICA1 Missense_Mutation p.R83H 0.47 deleterious(0.02) benign(0.141) TCGA-E2-A15K-01 11 124180566 124180566 C T OR8D1 Missense_Mutation p.G33R 0.57 deleterious(0.02) possibly_damaging(0.779) TCGA-E2-A15K-01 11 4703745 4703745 G C OR51E2 Missense_Mutation p.A66G 0.28 deleterious(0) probably_damaging(0.996) TCGA-E2-A15K-01 11 64600178 64600178 C T CDC42BPG Missense_Mutation p.R968H 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A15K-01 12 120602272 120602272 C A GCN1L1 Silent p.V572V 0.40 TCGA-E2-A15K-01 12 24982785 24982785 C T BCAT1 Missense_Mutation p.R376H 0.34 deleterious(0) possibly_damaging(0.806) TCGA-E2-A15K-01 12 52797575 52797575 C T KRT82 Missense_Mutation p.R177Q 0.31 tolerated(0.06) benign(0.047) TCGA-E2-A15K-01 12 70932079 70932079 T C PTPRB Intron 0.33 TCGA-E2-A15K-01 13 110850853 110850853 G A COL4A1 Missense_Mutation p.P416S 0.35 unknown(0) TCGA-E2-A15K-01 13 52639481 52639481 A G NEK5 3'UTR 0.41 TCGA-E2-A15K-01 14 24845738 24845738 C - NFATC4 Frame_Shift_Del p.P829Lfs*78 0.46 TCGA-E2-A15K-01 15 49118114 49118114 C T SHC4 3'UTR 0.47 TCGA-E2-A15K-01 15 85164438 85164438 G A ZSCAN2 Missense_Mutation p.E338K 0.36 deleterious(0.02) benign(0.002) TCGA-E2-A15K-01 17 12913975 12913975 T C ELAC2 Silent p.R231R 0.42 TCGA-E2-A15K-01 17 7989371 7989371 C T ALOX12B Missense_Mutation p.M105I 0.32 tolerated(0.76) benign(0.003) TCGA-E2-A15K-01 17 8415888 8415888 C G MYH10 Missense_Mutation p.A945P 0.25 possibly_damaging(0.533) TCGA-E2-A15K-01 18 46284669 46284669 G C CTIF Missense_Mutation p.E322Q 0.38 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-E2-A15K-01 18 47802228 47802228 G A MBD1 Missense_Mutation p.R214C 0.29 deleterious(0) probably_damaging(0.999) TCGA-E2-A15K-01 19 2213589 2213589 C G DOT1L Missense_Mutation p.Q537E 0.36 tolerated(0.08) possibly_damaging(0.878) TCGA-E2-A15K-01 19 23837311 23837311 T A ZNF675 Nonsense_Mutation p.K142* 0.38 TCGA-E2-A15K-01 19 35998373 35998373 C T DMKN Intron 0.27 TCGA-E2-A15K-01 19 37382643 37382645 CTT - ZNF829 In_Frame_Del p.K431del 0.34 TCGA-E2-A15K-01 19 39292540 39292540 C T LGALS4 Missense_Mutation p.R279H 0.29 deleterious(0.05) benign(0.308) TCGA-E2-A15K-01 19 50436338 50436338 C T ATF5 Missense_Mutation p.R280C 0.31 deleterious(0) possibly_damaging(0.609) TCGA-E2-A15K-01 19 54711446 54711446 C A RPS9 3'UTR 0.10 TCGA-E2-A15K-01 19 6751237 6751237 G A TRIP10 3'UTR 0.31 TCGA-E2-A15K-01 19 7698413 7698413 G A PCP2 5'UTR 0.47 TCGA-E2-A15K-01 1 113456766 113456766 C T SLC16A1 Missense_Mutation p.G417E 0.27 deleterious(0.02) possibly_damaging(0.864) TCGA-E2-A15K-01 1 216680202 216680202 C G ESRRG 3'UTR 0.73 TCGA-E2-A15K-01 1 22304903 22304903 G A CELA3B Missense_Mutation p.V29I 0.08 deleterious(0.01) possibly_damaging(0.643) TCGA-E2-A15K-01 1 240370374 240370374 G A FMN2 Silent p.V754V 0.15 TCGA-E2-A15K-01 1 243437874 243437874 G A SDCCAG8 Missense_Mutation p.M112I 0.07 tolerated(0.36) benign(0.002) TCGA-E2-A15K-01 1 44426575 44426575 G T IPO13 Missense_Mutation p.V713F 0.35 deleterious(0.02) benign(0.362) TCGA-E2-A15K-01 1 46512262 46512262 A C PIK3R3 Missense_Mutation p.L326R 0.32 deleterious(0) possibly_damaging(0.729) TCGA-E2-A15K-01 20 8709740 8709740 C T PLCB1 Missense_Mutation p.R603C 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A15K-01 21 41719610 41719610 C T DSCAM Silent p.Q399Q 0.35 TCGA-E2-A15K-01 22 33245467 33245467 G A TIMP3 Silent p.K50K 0.33 TCGA-E2-A15K-01 2 216288147 216288147 C A FN1 Missense_Mutation p.R440I 0.43 deleterious(0) possibly_damaging(0.625) TCGA-E2-A15K-01 2 237405911 237405911 G A IQCA1 Silent p.D77D 0.40 TCGA-E2-A15K-01 2 24118722 24118722 C A ATAD2B Missense_Mutation p.R112L 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.694) TCGA-E2-A15K-01 3 175189546 175189546 G T NAALADL2 Missense_Mutation p.E551D 0.30 tolerated(0.1) possibly_damaging(0.741) TCGA-E2-A15K-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.36 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A15K-01 3 33175699 33175699 C T CRTAP Missense_Mutation p.T365I 0.33 deleterious(0.02) benign(0.43) TCGA-E2-A15K-01 3 42230525 42230525 C T TRAK1 Missense_Mutation p.S200L 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-E2-A15K-01 3 65346921 65346921 C T MAGI1 Missense_Mutation p.R1196K 0.34 tolerated(0.42) benign(0.044) TCGA-E2-A15K-01 5 13759060 13759060 G A DNAH5 Silent p.L3438L 0.41 TCGA-E2-A15K-01 5 68470891 68470891 G T CCNB1 Missense_Mutation p.G298V 0.36 deleterious(0) probably_damaging(0.99) TCGA-E2-A15K-01 6 130407393 130407393 A G L3MBTL3 Missense_Mutation p.K506E 0.42 deleterious(0) probably_damaging(0.998) TCGA-E2-A15K-01 6 53883886 53883886 G T MLIP Silent p.L20L 0.39 TCGA-E2-A15K-01 8 22146119 22146120 - A PIWIL2 Frame_Shift_Ins p.I311Dfs*7 0.35 TCGA-E2-A15K-01 9 111735100 111735100 G T CTNNAL1 Missense_Mutation p.A401E 0.45 deleterious(0) probably_damaging(1) TCGA-E2-A15K-01 X 21857777 21857777 G A MBTPS2 5'UTR 0.32 TCGA-E2-A15K-01 X 32591673 32591673 T G DMD Missense_Mutation p.M596L 0.21 benign(0.001) TCGA-E2-A15K-01 X 48214616 48214616 C A SSX3 Missense_Mutation p.K23N 0.33 deleterious(0) probably_damaging(0.963) TCGA-E2-A15L-01 10 73039667 73039667 G A UNC5B Missense_Mutation p.A57T 0.26 deleterious(0) probably_damaging(0.95) TCGA-E2-A15L-01 12 126137027 126137027 C T TMEM132B Missense_Mutation p.T647M 0.34 deleterious(0) probably_damaging(0.998) TCGA-E2-A15L-01 12 50045069 50045069 C T FMNL3 Missense_Mutation p.R560Q 0.32 tolerated(0.09) probably_damaging(0.988) TCGA-E2-A15L-01 12 69265694 69265694 C T CPM Missense_Mutation p.V101I 0.37 tolerated(0.09) benign(0.092) TCGA-E2-A15L-01 14 51237222 51237222 C G NIN Missense_Mutation p.E440Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-E2-A15L-01 14 99968624 99968624 A G CCNK Missense_Mutation p.K219R 0.30 deleterious(0.04) benign(0.444) TCGA-E2-A15L-01 16 29994166 29994166 A T TAOK2 Missense_Mutation p.I315F 0.40 deleterious(0) possibly_damaging(0.749) TCGA-E2-A15L-01 16 66957813 66957813 T C RRAD Missense_Mutation p.Y127C 0.45 tolerated(0.05) probably_damaging(0.979) TCGA-E2-A15L-01 16 88593275 88593276 - C ZFPM1 Frame_Shift_Ins p.Q154Pfs*5 0.31 TCGA-E2-A15L-01 19 14213716 14213716 A G PRKACA Missense_Mutation p.L83P 0.34 deleterious(0) probably_damaging(0.947) TCGA-E2-A15L-01 19 1482437 1482437 C T PCSK4 Silent p.T578T 0.50 TCGA-E2-A15L-01 19 16279058 16279058 G C CIB3 Missense_Mutation p.S79C 0.38 deleterious(0) possibly_damaging(0.906) TCGA-E2-A15L-01 19 3924603 3924603 A G ATCAY 3'UTR 0.33 TCGA-E2-A15L-01 19 39926258 39926258 G C RPS16 Missense_Mutation p.L47V 0.47 deleterious(0.02) benign(0.311) TCGA-E2-A15L-01 19 46915828 46915828 C T CCDC8 Silent p.R80R 0.38 TCGA-E2-A15L-01 19 49225113 49225113 G A RASIP1 Missense_Mutation p.T897I 0.08 deleterious(0) possibly_damaging(0.731) TCGA-E2-A15L-01 1 109466799 109466799 C A GPSM2 Missense_Mutation p.A593D 0.36 deleterious(0.03) benign(0.046) TCGA-E2-A15L-01 1 206139148 206139148 G C FAM72A 5'UTR 0.33 TCGA-E2-A15L-01 1 237947353 237947353 G A RYR2 Missense_Mutation p.R4114Q 0.28 probably_damaging(0.995) TCGA-E2-A15L-01 20 3016449 3016449 G A PTPRA Missense_Mutation p.R687Q 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A15L-01 2 28631710 28631710 G C FOSL2 Missense_Mutation p.E147Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-E2-A15L-01 2 74709370 74709370 A C CCDC142 Missense_Mutation p.S199A 0.30 tolerated(0.17) benign(0.054) TCGA-E2-A15L-01 3 109213001 109213001 T C RP11-702L6.4 RNA 0.33 TCGA-E2-A15L-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.38 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A15L-01 3 52430731 52430731 A G DNAH1 Missense_Mutation p.Y3843C 0.36 probably_damaging(1) TCGA-E2-A15L-01 3 64133124 64133124 C A PRICKLE2 Nonsense_Mutation p.E348* 0.34 TCGA-E2-A15L-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.40 TCGA-E2-A15L-01 5 118480270 118480270 G A DMXL1 Missense_Mutation p.D836N 0.47 tolerated(0.08) benign(0.005) TCGA-E2-A15L-01 5 56177916 56177919 CAGT - MAP3K1 Frame_Shift_Del p.Q965Vfs*2 0.68 TCGA-E2-A15L-01 5 65088425 65088425 C T NLN Silent p.D490D 0.42 TCGA-E2-A15L-01 6 167417316 167417320 TTACA - FGFR1OP Intron 0.41 TCGA-E2-A15L-01 8 102571029 102571029 G A GRHL2 Missense_Mutation p.A223T 0.35 tolerated(0.41) benign(0) TCGA-E2-A15L-01 8 107715146 107715146 G A OXR1 Missense_Mutation p.G231S 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A15L-01 9 35753714 35753714 C T MSMP Missense_Mutation p.R61H 0.43 tolerated(0.14) possibly_damaging(0.807) TCGA-E2-A15L-01 9 93376141 93376141 C T DIRAS2 5'UTR 0.26 TCGA-E2-A15L-01 X 12156950 12156950 C T FRMPD4 5'UTR 0.11 TCGA-E2-A15L-01 X 15610358 15610358 C A ACE2 Nonsense_Mutation p.E145* 0.48 TCGA-E2-A15L-01 X 37026638 37026638 C T FAM47C Missense_Mutation p.T52M 0.24 deleterious(0) probably_damaging(0.934) TCGA-E2-A15M-01 10 102762562 102762562 C T LZTS2 Silent p.T89T 0.06 TCGA-E2-A15M-01 10 103433309 103433309 C G FBXW4 Missense_Mutation p.A160P 0.07 tolerated(0.09) benign(0.005) TCGA-E2-A15M-01 10 108434901 108434901 C T SORCS1 Missense_Mutation p.E616K 0.19 deleterious(0) probably_damaging(0.998) TCGA-E2-A15M-01 10 92638822 92638822 A T RPP30 Missense_Mutation p.R91S 0.19 tolerated(0.21) possibly_damaging(0.531) TCGA-E2-A15M-01 11 55029718 55029718 G A TRIM48 5'UTR 0.12 TCGA-E2-A15M-01 11 56510936 56510936 A G OR9G4 Missense_Mutation p.F118L 0.20 tolerated(0.06) probably_damaging(0.995) TCGA-E2-A15M-01 11 6048719 6048719 G C OR56A1 Silent p.L72L 0.19 TCGA-E2-A15M-01 11 63585290 63585290 G A C11orf84 Silent p.E47E 0.22 TCGA-E2-A15M-01 12 109577236 109577236 G T ACACB Missense_Mutation p.C9F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-E2-A15M-01 12 115114129 115114129 G C TBX3 Missense_Mutation p.S363W 0.32 deleterious(0) probably_damaging(0.97) TCGA-E2-A15M-01 12 118293372 118293372 G A KSR2 Silent p.P111P 0.36 TCGA-E2-A15M-01 12 30823923 30823923 G T IPO8 Silent p.T339T 0.17 TCGA-E2-A15M-01 12 977510 977510 C T WNK1 Intron 0.27 TCGA-E2-A15M-01 13 110822965 110822965 G A COL4A1 Missense_Mutation p.P1224L 0.06 probably_damaging(0.984) TCGA-E2-A15M-01 13 95114308 95114318 CTTCTGGAGAG - DCT Frame_Shift_Del p.S330Ffs*2 0.23 TCGA-E2-A15M-01 14 39722059 39722059 G A MIA2 Missense_Mutation p.E559K 0.27 deleterious(0.02) benign(0.034) TCGA-E2-A15M-01 14 63174802 63174802 G A KCNH5 Silent p.V797V 0.12 TCGA-E2-A15M-01 15 50905926 50905926 G C TRPM7 Missense_Mutation p.T583R 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-E2-A15M-01 15 90210242 90210242 C G PLIN1 Silent p.G378G 0.27 TCGA-E2-A15M-01 15 90983744 90983744 C A IQGAP1 Silent p.I182I 0.08 TCGA-E2-A15M-01 16 14738316 14738316 A C BFAR Missense_Mutation p.Y38S 0.22 deleterious(0) possibly_damaging(0.47) TCGA-E2-A15M-01 16 69202749 69202749 A C CIRH1A Missense_Mutation p.D657A 0.27 deleterious(0.01) possibly_damaging(0.477) TCGA-E2-A15M-01 17 25937168 25937168 C T KSR1 Silent p.P652P 0.30 TCGA-E2-A15M-01 17 38911459 38911459 C G KRT25 Missense_Mutation p.R22T 0.15 deleterious(0) benign(0.328) TCGA-E2-A15M-01 17 41158967 41158967 G - IFI35 Frame_Shift_Del p.M1? 0.19 TCGA-E2-A15M-01 17 47376040 47376040 A G ZNF652 Missense_Mutation p.V519A 0.24 tolerated_low_confidence(0.82) benign(0.002) TCGA-E2-A15M-01 17 7578542 7578542 G C TP53 Missense_Mutation p.L130V 0.24 deleterious(0) probably_damaging(0.997) TCGA-E2-A15M-01 18 44236973 44236973 C T LOXHD1 Silent p.R8R 0.24 TCGA-E2-A15M-01 18 47329199 47329199 C A ACAA2 Missense_Mutation p.R14L 0.11 deleterious(0) probably_damaging(0.998) TCGA-E2-A15M-01 18 72342935 72342935 A T ZNF407 5'Flank 0.36 TCGA-E2-A15M-01 19 11493879 11493879 C T EPOR Missense_Mutation p.E49K 0.12 tolerated(0.25) benign(0.004) TCGA-E2-A15M-01 19 19329805 19329805 C T NCAN Missense_Mutation p.A52V 0.16 deleterious(0) probably_damaging(0.999) TCGA-E2-A15M-01 19 38102566 38102566 G C ZNF540 Missense_Mutation p.E129Q 0.21 deleterious(0.04) benign(0.027) TCGA-E2-A15M-01 19 3918805 3918805 G A ATCAY Missense_Mutation p.A335T 0.03 tolerated(0.09) benign(0) TCGA-E2-A15M-01 19 43766118 43766118 G A PSG9 Silent p.T201T 0.09 TCGA-E2-A15M-01 19 44831626 44831626 G A ZNF112 Missense_Mutation p.S901L 0.10 deleterious(0.02) benign(0.058) TCGA-E2-A15M-01 19 51629007 51629007 C T SIGLEC9 Missense_Mutation p.T192I 0.37 deleterious(0.05) benign(0.031) TCGA-E2-A15M-01 19 51958002 51958002 C A SIGLEC8 Missense_Mutation p.A362S 0.09 deleterious(0.04) benign(0.072) TCGA-E2-A15M-01 19 55450823 55450823 C T NLRP7 Missense_Mutation p.R455H 0.24 deleterious(0.04) possibly_damaging(0.847) TCGA-E2-A15M-01 19 8191185 8191185 G A FBN3 Silent p.C867C 0.30 TCGA-E2-A15M-01 19 9076968 9076968 A G MUC16 Missense_Mutation p.I3493T 0.18 unknown(0) TCGA-E2-A15M-01 1 116233986 116233986 G C VANGL1 Missense_Mutation p.E521Q 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A15M-01 1 165797080 165797080 G T UCK2 Missense_Mutation p.D4Y 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E2-A15M-01 1 178854286 178854286 C T RALGPS2 Missense_Mutation p.P327L 0.07 deleterious(0.05) benign(0.021) TCGA-E2-A15M-01 1 19186120 19186120 A T TAS1R2 Missense_Mutation p.F12Y 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-E2-A15M-01 1 197397057 197397057 C T CRB1 Missense_Mutation p.P868S 0.37 tolerated(1) benign(0) TCGA-E2-A15M-01 1 207753648 207753648 C T CR1 Missense_Mutation p.S1667L 0.34 deleterious(0.02) possibly_damaging(0.567) TCGA-E2-A15M-01 1 228598744 228598744 T C TRIM17 Missense_Mutation p.E220G 0.08 deleterious(0.02) benign(0.074) TCGA-E2-A15M-01 1 248308750 248308750 A G OR2M5 Missense_Mutation p.I101V 0.18 deleterious(0.04) possibly_damaging(0.598) TCGA-E2-A15M-01 1 248637013 248637013 C A OR2T3 Missense_Mutation p.A121D 0.30 deleterious(0) benign(0.08) TCGA-E2-A15M-01 1 93602616 93602616 C A MTF2 3'UTR 0.12 TCGA-E2-A15M-01 20 25388382 25388382 G T GINS1 5'UTR 0.11 TCGA-E2-A15M-01 20 25388383 25388383 C T GINS1 5'UTR 0.11 TCGA-E2-A15M-01 20 50407730 50407730 C T SALL4 Missense_Mutation p.R431Q 0.08 tolerated(0.08) probably_damaging(0.996) TCGA-E2-A15M-01 20 60889977 60889977 G A LAMA5 Nonsense_Mutation p.Q2692* 0.30 TCGA-E2-A15M-01 21 46888225 46888225 C T COL18A1 Missense_Mutation p.T239M 0.11 unknown(0) TCGA-E2-A15M-01 22 35478527 35478527 G A ISX Silent p.K82K 0.26 TCGA-E2-A15M-01 22 42607185 42607185 C T TCF20 Missense_Mutation p.G1376E 0.07 probably_damaging(0.992) TCGA-E2-A15M-01 2 216262561 216262561 C G FN1 Missense_Mutation p.R1120P 0.22 deleterious(0.02) probably_damaging(1) TCGA-E2-A15M-01 2 219259428 219259428 C A SLC11A1 Missense_Mutation p.L488M 0.10 deleterious(0.04) possibly_damaging(0.824) TCGA-E2-A15M-01 2 228883836 228883836 C T SPHKAP Silent p.E578E 0.23 TCGA-E2-A15M-01 2 26204304 26204304 C T KIF3C Silent p.P161P 0.25 TCGA-E2-A15M-01 2 55093924 55093924 C G EML6 Missense_Mutation p.Q652E 0.07 tolerated(0.16) benign(0.038) TCGA-E2-A15M-01 2 73487592 73487592 C T FBXO41 Missense_Mutation p.E792K 0.21 tolerated(0.26) possibly_damaging(0.52) TCGA-E2-A15M-01 3 119396062 119396062 C T COX17 Silent p.A32A 0.14 TCGA-E2-A15M-01 3 154138885 154138885 T C GPR149 Silent p.K522K 0.12 TCGA-E2-A15M-01 3 172520404 172520404 A G ECT2 Splice_Site p.X636_splice 0.20 TCGA-E2-A15M-01 3 178785497 178785497 G T ZMAT3 Missense_Mutation p.P15H 0.09 deleterious_low_confidence(0.04) benign(0.436) TCGA-E2-A15M-01 3 189038603 189038603 T G TPRG1 Silent p.G274G 0.12 TCGA-E2-A15M-01 3 50332623 50332623 C A HYAL3 Silent p.G137G 0.08 TCGA-E2-A15M-01 3 56653393 56653393 G A CCDC66 Missense_Mutation p.E825K 0.12 tolerated(0.18) benign(0.201) TCGA-E2-A15M-01 3 97607255 97607255 G C CRYBG3 Missense_Mutation p.E506Q 0.15 tolerated(0.06) possibly_damaging(0.832) TCGA-E2-A15M-01 3 98237804 98237804 T A CLDND1 Missense_Mutation p.T133S 0.09 tolerated(0.62) benign(0.01) TCGA-E2-A15M-01 4 104084638 104084638 C G CENPE Missense_Mutation p.E574Q 0.27 probably_damaging(0.998) TCGA-E2-A15M-01 4 129964598 129964598 C T SCLT1 Silent p.E62E 0.11 TCGA-E2-A15M-01 4 135248485 135248485 C T RP11-400D2.2 RNA 0.28 TCGA-E2-A15M-01 4 169433082 169433082 C T PALLD Missense_Mutation p.R143C 0.35 deleterious(0.03) benign(0.015) TCGA-E2-A15M-01 4 22390713 22390713 G C GPR125 Silent p.P907P 0.13 TCGA-E2-A15M-01 4 38910268 38910268 C A FAM114A1 Missense_Mutation p.T238N 0.21 deleterious(0) possibly_damaging(0.777) TCGA-E2-A15M-01 5 137480865 137480865 C T BRD8 Splice_Site p.X1146_splice 0.32 TCGA-E2-A15M-01 5 137666884 137666884 C T CDC25C 5'UTR 0.15 TCGA-E2-A15M-01 5 140564570 140564570 C G PCDHB16 3'UTR 0.48 TCGA-E2-A15M-01 5 169697879 169697879 C T LCP2 Missense_Mutation p.E123K 0.33 deleterious(0.04) benign(0.341) TCGA-E2-A15M-01 5 40936438 40936438 A T C7 Splice_Site p.X94_splice 0.23 TCGA-E2-A15M-01 5 52243219 52243219 A T ITGA1 Silent p.P1141P 0.20 TCGA-E2-A15M-01 5 637664 637664 C G CEP72 Missense_Mutation p.Q313E 0.06 tolerated(0.05) possibly_damaging(0.676) TCGA-E2-A15M-01 5 72189201 72189201 C T TNPO1 Intron 0.21 TCGA-E2-A15M-01 5 79032493 79032493 C A CMYA5 Missense_Mutation p.F2635L 0.21 benign(0.005) TCGA-E2-A15M-01 6 43225687 43225687 G A TTBK1 Silent p.Q333Q 0.11 TCGA-E2-A15M-01 6 7583848 7583848 G C DSP Missense_Mutation p.R2118T 0.09 benign(0.253) TCGA-E2-A15M-01 6 96969749 96969749 G A UFL1 5'UTR 0.14 TCGA-E2-A15M-01 7 141296374 141296374 C G AGK Missense_Mutation p.Q52E 0.16 tolerated(0.34) benign(0.016) TCGA-E2-A15M-01 7 142028570 142028570 C G TRBV6-1 Missense_Mutation p.P102A 0.10 tolerated(0.22) benign(0.121) TCGA-E2-A15M-01 7 27182735 27182735 G T HOXA5 Missense_Mutation p.S164R 0.26 tolerated(0.37) benign(0.005) TCGA-E2-A15M-01 7 39379419 39379419 C T POU6F2 Silent p.P230P 0.24 TCGA-E2-A15M-01 7 43351515 43351515 G A HECW1 Missense_Mutation p.V61I 0.25 tolerated_low_confidence(0.25) benign(0.007) TCGA-E2-A15M-01 7 65551616 65551616 C T ASL Missense_Mutation p.A164V 0.13 deleterious(0) probably_damaging(0.978) TCGA-E2-A15M-01 8 105509599 105509599 C T LRP12 Missense_Mutation p.R394H 0.42 tolerated(0.14) probably_damaging(0.998) TCGA-E2-A15M-01 8 122641065 122641065 C T HAS2 Silent p.T172T 0.09 TCGA-E2-A15M-01 8 141549423 141549423 T A AGO2 Missense_Mutation p.E722V 0.12 deleterious(0) possibly_damaging(0.908) TCGA-E2-A15M-01 8 145580359 145580380 GGGGCAGCAGCTGCCCTGCAGA - FBXL6 Splice_Site p.X294_splice 0.30 TCGA-E2-A15M-01 8 77619838 77619838 A G ZFHX4 Missense_Mutation p.D883G 0.08 possibly_damaging(0.728) TCGA-E2-A15M-01 8 80679523 80679523 C T HEY1 Silent p.L32L 0.45 TCGA-E2-A15M-01 8 95419695 95419695 G A RAD54B Silent p.C251C 0.10 TCGA-E2-A15M-01 9 123550286 123550286 G C FBXW2 Missense_Mutation p.S84C 0.31 tolerated(0.33) benign(0.009) TCGA-E2-A15M-01 9 134165688 134165688 C T PPAPDC3 Missense_Mutation p.R102W 0.31 deleterious(0) possibly_damaging(0.603) TCGA-E2-A15M-01 9 134514093 134514093 C T RAPGEF1 Missense_Mutation p.V195M 0.22 deleterious(0.04) probably_damaging(0.918) TCGA-E2-A15M-01 9 37537587 37537587 G A FBXO10 Silent p.I313I 0.18 TCGA-E2-A15M-01 9 69200364 69200435 AGGGCCGACGAGGCCGACAGGTGCCCGCCCAGCACCGCGCCCTTGGTGGGAGCGCAGCCGTTGGCGCAGTCC GCCGACGAGGCCGACAGGTGCCCGCCCAGCACCGCGCCCTTGGTGGGAGCGCAGCCGTTGGCGCAG FOXD4L6 In_Frame_Del p.R393_C417delinsTAPTAALPPRARCWAGTCRPRRR 0.09 TCGA-E2-A15M-01 X 107396915 107396915 G - ATG4A Frame_Shift_Del p.E391Kfs*6 0.22 TCGA-E2-A15M-01 X 31525555 31525555 T - DMD Frame_Shift_Del p.I2745Lfs*19 0.12 TCGA-E2-A15M-01 X 34961675 34961675 C T FAM47B Missense_Mutation p.R243C 0.06 tolerated(0.08) possibly_damaging(0.541) TCGA-E2-A15M-01 X 48418304 48418304 C A TBC1D25 Missense_Mutation p.D336E 0.11 deleterious(0) probably_damaging(0.968) TCGA-E2-A15M-01 X 48458901 48458901 A G WDR13 Missense_Mutation p.T240A 0.26 deleterious(0.05) benign(0.17) TCGA-E2-A15O-01 12 114386694 114386694 C A RBM19 Missense_Mutation p.R407L 0.22 deleterious(0) probably_damaging(0.999) TCGA-E2-A15O-01 13 52684534 52684534 T C NEK5 Missense_Mutation p.S137G 0.59 deleterious(0) probably_damaging(0.982) TCGA-E2-A15O-01 14 22315349 22315349 C T TRAV8-2 Missense_Mutation p.T96M 0.36 deleterious(0.01) benign(0.119) TCGA-E2-A15O-01 14 95053768 95053768 C A SERPINA5 Missense_Mutation p.H23Q 0.35 tolerated(0.21) benign(0.079) TCGA-E2-A15O-01 15 100173343 100173347 CAAAT - MEF2A Frame_Shift_Del p.Q7Hfs*6 0.36 TCGA-E2-A15O-01 17 16691307 16691307 T A CCDC144A 3'UTR 0.25 TCGA-E2-A15O-01 17 36491508 36491508 T C GPR179 Missense_Mutation p.I458V 0.29 tolerated(0.24) benign(0.074) TCGA-E2-A15O-01 17 37899253 37899253 G A GRB7 Missense_Mutation p.A160T 0.11 deleterious(0.03) benign(0.245) TCGA-E2-A15O-01 17 40042364 40042364 C T ACLY Splice_Site p.X691_splice 0.38 TCGA-E2-A15O-01 19 22847203 22847203 G A ZNF492 Silent p.K244K 0.18 TCGA-E2-A15O-01 19 51021653 51021653 C A LRRC4B Silent p.T439T 0.25 TCGA-E2-A15O-01 19 918593 918593 C T KISS1R Silent p.F98F 0.38 TCGA-E2-A15O-01 1 10205077 10205077 C T UBE4B Missense_Mutation p.R815C 0.65 deleterious(0) probably_damaging(0.985) TCGA-E2-A15O-01 1 11188177 11188177 T A MTOR Missense_Mutation p.I1973F 0.59 deleterious(0) probably_damaging(0.986) TCGA-E2-A15O-01 1 158435388 158435388 G A OR10K1 Missense_Mutation p.V13I 0.29 tolerated(1) benign(0.007) TCGA-E2-A15O-01 1 160261650 160261650 G C COPA Missense_Mutation p.L1082V 0.29 tolerated(0.22) benign(0.001) TCGA-E2-A15O-01 1 179310278 179310278 C T SOAT1 Missense_Mutation p.H205Y 0.36 tolerated(0.5) benign(0.063) TCGA-E2-A15O-01 1 21546502 21546502 G C ECE1 Missense_Mutation p.F753L 0.60 deleterious(0) probably_damaging(0.998) TCGA-E2-A15O-01 1 234367371 234367371 C T SLC35F3 Silent p.D164D 0.26 TCGA-E2-A15O-01 20 36869418 36869418 G A KIAA1755 Missense_Mutation p.S372F 0.27 deleterious(0) benign(0.332) TCGA-E2-A15O-01 22 24463095 24463095 C - CABIN1 Frame_Shift_Del p.I733Ffs*18 0.50 TCGA-E2-A15O-01 2 190428601 190428601 G A SLC40A1 Missense_Mutation p.R371W 0.34 deleterious(0) probably_damaging(0.988) TCGA-E2-A15O-01 2 219246934 219246934 C A SLC11A1 5'UTR 0.38 TCGA-E2-A15O-01 2 74762803 74762803 C A LOXL3 Missense_Mutation p.G443V 0.45 deleterious(0) probably_damaging(0.994) TCGA-E2-A15O-01 3 136078054 136078054 G A STAG1 Missense_Mutation p.R958C 0.64 deleterious(0) probably_damaging(1) TCGA-E2-A15O-01 4 174254765 174254765 T A HMGB2 Missense_Mutation p.K12N 0.25 tolerated(0.08) probably_damaging(0.983) TCGA-E2-A15O-01 5 149773041 149773041 C T TCOF1 Missense_Mutation p.A1236V 0.37 tolerated(0.12) benign(0.259) TCGA-E2-A15O-01 5 179044055 179044055 A T HNRNPH1 Missense_Mutation p.Y372N 0.41 tolerated(0.11) probably_damaging(0.958) TCGA-E2-A15O-01 5 180377233 180377233 G A BTNL8 Missense_Mutation p.V398I 0.74 tolerated(0.09) benign(0.001) TCGA-E2-A15O-01 5 56160578 56160579 CA - MAP3K1 Frame_Shift_Del p.P286Tfs*14 0.29 TCGA-E2-A15O-01 5 96077234 96077234 A T CAST Missense_Mutation p.T309S 0.32 tolerated(0.44) benign(0.012) TCGA-E2-A15O-01 5 98236686 98236686 T G CHD1 Silent p.R230R 0.27 TCGA-E2-A15O-01 7 86825961 86825961 C T TMEM243 Silent p.V116V 0.40 TCGA-E2-A15O-01 8 125047696 125047696 G T FER1L6 Splice_Site p.X822_splice 0.26 TCGA-E2-A15O-01 9 138591368 138591368 C T SOHLH1 5'UTR 0.47 TCGA-E2-A15O-01 X 30268880 30268880 T C MAGEB1 Silent p.N90N 0.26 TCGA-E2-A15O-01 X 77912478 77912478 G A ZCCHC5 3'UTR 0.42 TCGA-E2-A15P-01 10 28900761 28900762 AT - WAC Frame_Shift_Del p.Y450Cfs*11 0.11 TCGA-E2-A15P-01 10 51592555 51592555 T C TIMM23 Silent p.L193L 0.46 TCGA-E2-A15P-01 11 20177994 20177994 G A DBX1 Silent p.S305S 0.35 TCGA-E2-A15P-01 11 34194815 34194815 G A ABTB2 Silent p.R428R 0.24 TCGA-E2-A15P-01 11 58345493 58345493 G A LPXN Silent p.S9S 0.38 TCGA-E2-A15P-01 12 132284037 132284037 G - SFSWAP 3'UTR 0.20 TCGA-E2-A15P-01 12 69140514 69140516 CTT - SLC35E3 In_Frame_Del p.F120del 0.25 TCGA-E2-A15P-01 14 102446082 102446082 T C DYNC1H1 Missense_Mutation p.V182A 0.10 benign(0.006) TCGA-E2-A15P-01 14 91007788 91007788 T G TTC7B Missense_Mutation p.E819A 0.30 deleterious(0.03) probably_damaging(0.99) TCGA-E2-A15P-01 14 91007891 91007891 T G TTC7B Missense_Mutation p.K785Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-E2-A15P-01 15 42529656 42529656 T C TMEM87A Missense_Mutation p.Q281R 0.32 deleterious(0) probably_damaging(1) TCGA-E2-A15P-01 15 78572663 78572666 AAGT - DNAJA4 Frame_Shift_Del p.K381Rfs*12 0.31 TCGA-E2-A15P-01 16 30596856 30596856 G A ZNF785 Missense_Mutation p.P26L 0.07 deleterious(0.02) benign(0.097) TCGA-E2-A15P-01 17 30267462 30267465 CTTA - SUZ12 Frame_Shift_Del p.Y117Cfs*24 0.08 TCGA-E2-A15P-01 17 79094046 79094048 CTT - AATK In_Frame_Del p.K1230del 0.21 TCGA-E2-A15P-01 19 14150588 14150588 G C IL27RA Missense_Mutation p.G134R 0.06 tolerated(0.35) benign(0.004) TCGA-E2-A15P-01 19 44008096 44008098 CTT - PHLDB3 In_Frame_Del p.E58del 0.31 TCGA-E2-A15P-01 1 109525305 109525305 C T WDR47 Missense_Mutation p.G739E 0.40 deleterious(0) probably_damaging(1) TCGA-E2-A15P-01 1 16257842 16257842 C - SPEN Frame_Shift_Del p.P1704Qfs*11 0.13 TCGA-E2-A15P-01 1 43212402 43212403 GA - LEPRE1 3'UTR 0.32 TCGA-E2-A15P-01 21 34968081 34968081 T C CRYZL1 Missense_Mutation p.D287G 0.25 deleterious(0.02) possibly_damaging(0.759) TCGA-E2-A15P-01 21 43187137 43187137 A T RIPK4 Missense_Mutation p.F22Y 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-E2-A15P-01 2 171240240 171240240 G A MYO3B Silent p.G402G 0.23 TCGA-E2-A15P-01 2 174819671 174819674 TGTT - SP3 Frame_Shift_Del p.T523Lfs*3 0.23 TCGA-E2-A15P-01 2 179442017 179442017 C T TTN Silent p.A23015A 0.29 TCGA-E2-A15P-01 2 55214698 55214699 CA - RTN4 Frame_Shift_Del p.V1050Dfs*5 0.24 TCGA-E2-A15P-01 2 70475537 70475538 AG - TIA1 Frame_Shift_Del p.L9Ifs*4 0.36 TCGA-E2-A15P-01 2 74900877 74900879 CTT - SEMA4F In_Frame_Del p.F251del 0.29 TCGA-E2-A15P-01 2 84518368 84518368 C T FUNDC2P2 RNA 0.26 TCGA-E2-A15P-01 2 8822205 8822205 G T ID2 5'UTR 0.24 TCGA-E2-A15P-01 2 95847302 95847302 G A ZNF2 Silent p.S243S 0.32 TCGA-E2-A15P-01 3 176756187 176756189 TGT - TBL1XR1 In_Frame_Del p.N320del 0.31 TCGA-E2-A15P-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.27 deleterious(0.04) probably_damaging(0.96) TCGA-E2-A15P-01 3 189597992 189597992 T G TP63 Intron 0.26 TCGA-E2-A15P-01 3 196846394 196846396 AGA - DLG1 In_Frame_Del p.S424del 0.22 TCGA-E2-A15P-01 3 37033943 37033945 AGA - EPM2AIP1 In_Frame_Del p.L209del 0.28 TCGA-E2-A15P-01 3 67058478 67058480 ATC - KBTBD8 In_Frame_Del p.H493del 0.33 TCGA-E2-A15P-01 3 88205221 88205223 AGA - C3orf38 In_Frame_Del p.E144del 0.30 TCGA-E2-A15P-01 4 10445214 10445214 A C ZNF518B Missense_Mutation p.D913E 0.29 tolerated(0.15) benign(0.023) TCGA-E2-A15P-01 4 435561 435562 CA - ZNF721 Frame_Shift_Del p.C898Wfs*5 0.10 TCGA-E2-A15P-01 5 111066613 111066614 - A NREP 3'UTR 0.25 TCGA-E2-A15P-01 5 150275009 150275009 T A ZNF300 Missense_Mutation p.I614F 0.33 deleterious(0) probably_damaging(0.997) TCGA-E2-A15P-01 5 34925580 34925580 G T BRIX1 Missense_Mutation p.D348Y 0.26 deleterious_low_confidence(0.02) benign(0.009) TCGA-E2-A15P-01 5 74706907 74706909 TTC - COL4A3BP In_Frame_Del p.R414del 0.26 TCGA-E2-A15P-01 7 141464672 141464674 CTT - TAS2R3 In_Frame_Del p.F241del 0.26 TCGA-E2-A15P-01 7 45753497 45753497 C T ADCY1 Missense_Mutation p.P1088L 0.43 deleterious_low_confidence(0.02) benign(0.001) TCGA-E2-A15P-01 7 99306769 99306769 A G CYP3A7 Missense_Mutation p.V381A 0.14 deleterious(0.03) possibly_damaging(0.672) TCGA-E2-A15P-01 7 99358590 99358592 TTC - CYP3A4 In_Frame_Del p.K422del 0.34 TCGA-E2-A15P-01 8 126030304 126030306 TTC - SQLE In_Frame_Del p.L405del 0.28 TCGA-E2-A15P-01 8 21965179 21965182 CTGT - NUDT18 Frame_Shift_Del p.T201Cfs*4 0.46 TCGA-E2-A15P-01 9 139943179 139943179 G A ENTPD2 Missense_Mutation p.S473F 0.25 tolerated(0.41) benign(0.021) TCGA-E2-A15P-01 X 150832809 150832809 G A PASD1 Missense_Mutation p.A354T 0.34 tolerated(1) benign(0.008) TCGA-E2-A15P-01 X 46434003 46434003 G A CHST7 Missense_Mutation p.A213T 0.29 tolerated(0.74) benign(0.002) TCGA-E2-A15R-01 10 93021117 93021117 G A PCGF5 Missense_Mutation p.R170H 0.39 tolerated(0.11) probably_damaging(0.988) TCGA-E2-A15R-01 11 120351050 120351050 A T ARHGEF12 Missense_Mutation p.D1383V 0.83 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A15R-01 11 4609000 4609000 C T OR52I2 Missense_Mutation p.P320S 0.25 deleterious(0) probably_damaging(1) TCGA-E2-A15R-01 11 49176021 49176021 A G FOLH1 Silent p.Y549Y 0.11 TCGA-E2-A15R-01 13 37678978 37678978 G T CSNK1A1L Missense_Mutation p.P139Q 0.68 deleterious_low_confidence(0) probably_damaging(1) TCGA-E2-A15R-01 14 55369216 55369216 C T GCH1 Missense_Mutation p.E56K 0.59 tolerated(0.18) benign(0.002) TCGA-E2-A15R-01 14 80669412 80669412 C T DIO2 Missense_Mutation p.E184K 0.41 tolerated(0.15) possibly_damaging(0.596) TCGA-E2-A15R-01 17 42330650 42330650 G T SLC4A1 Missense_Mutation p.A716D 0.58 deleterious(0.01) possibly_damaging(0.868) TCGA-E2-A15R-01 17 56569882 56569882 G A MTMR4 Missense_Mutation p.H1134Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-E2-A15R-01 17 76798464 76798464 G T USP36 Silent p.V988V 0.40 TCGA-E2-A15R-01 19 41450641 41450641 G A AC092071.1 5'Flank 0.38 TCGA-E2-A15R-01 19 42703632 42703632 C T DEDD2 Silent p.L313L 0.33 TCGA-E2-A15R-01 19 7964376 7964376 C T LRRC8E Silent p.Y323Y 0.42 TCGA-E2-A15R-01 19 9407034 9407034 T - ZNF699 Frame_Shift_Del p.H349Pfs*3 0.27 TCGA-E2-A15R-01 1 1222976 1222976 G A SCNN1D Missense_Mutation p.G467R 0.35 deleterious(0.01) possibly_damaging(0.479) TCGA-E2-A15R-01 1 160210035 160210035 G A DCAF8 Missense_Mutation p.R59C 0.57 tolerated(0.05) possibly_damaging(0.517) TCGA-E2-A15R-01 1 178490396 178490396 C T TEX35 Missense_Mutation p.R195W 0.29 deleterious_low_confidence(0) benign(0.231) TCGA-E2-A15R-01 1 201980286 201980286 A G ELF3 Missense_Mutation p.S8G 0.57 tolerated(0.15) probably_damaging(0.986) TCGA-E2-A15R-01 1 248039412 248039412 G A TRIM58 Missense_Mutation p.G361E 0.77 deleterious(0) probably_damaging(1) TCGA-E2-A15R-01 1 29189481 29189481 G A OPRD1 Missense_Mutation p.A269T 0.79 deleterious(0.01) possibly_damaging(0.507) TCGA-E2-A15R-01 1 6271954 6271954 G A RNF207 Silent p.A379A 0.71 TCGA-E2-A15R-01 20 31631125 31631125 G A BPIFB6 Silent p.P427P 0.32 TCGA-E2-A15R-01 21 44279796 44279796 G A WDR4 Silent p.P201P 0.35 TCGA-E2-A15R-01 2 144193247 144193247 C G ARHGAP15 Missense_Mutation p.I184M 0.41 deleterious(0) probably_damaging(0.995) TCGA-E2-A15R-01 2 46739133 46739133 G A ATP6V1E2 3'UTR 0.48 TCGA-E2-A15R-01 2 70923448 70923448 A G ADD2 Missense_Mutation p.C135R 0.37 deleterious(0) probably_damaging(0.999) TCGA-E2-A15R-01 3 10327073 10327073 G A GHRL 3'Flank 0.28 TCGA-E2-A15R-01 3 13860569 13860569 A T WNT7A Missense_Mutation p.C308S 0.33 deleterious(0) probably_damaging(0.996) TCGA-E2-A15R-01 3 48336715 48336715 G T NME6 Silent p.R90R 0.21 TCGA-E2-A15R-01 3 62467428 62467428 G A CADPS Missense_Mutation p.P1048L 0.42 deleterious(0) possibly_damaging(0.726) TCGA-E2-A15R-01 4 146062555 146062555 G A OTUD4 Nonsense_Mutation p.Q622* 0.40 TCGA-E2-A15R-01 4 3441258 3441258 C G RGS12 Silent p.P1397P 0.46 TCGA-E2-A15R-01 5 133902109 133902109 G A JADE2 Missense_Mutation p.D425N 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-E2-A15R-01 5 140615827 140615827 C T PCDHB18 RNA 0.36 TCGA-E2-A15R-01 5 93077199 93077199 G A POU5F2 Missense_Mutation p.P24L 0.48 deleterious(0.03) possibly_damaging(0.726) TCGA-E2-A15R-01 6 2890240 2890240 C A SERPINB9 3'UTR 0.50 TCGA-E2-A15R-01 6 33374648 33374648 C T KIFC1 Missense_Mutation p.S658F 0.48 deleterious(0) probably_damaging(0.998) TCGA-E2-A15R-01 7 142498959 142498959 G A TRBC2 Missense_Mutation p.R79H 0.17 deleterious(0) probably_damaging(0.98) TCGA-E2-A15R-01 7 156742517 156742517 G A NOM1 Missense_Mutation p.G29E 0.62 tolerated_low_confidence(0.15) probably_damaging(0.931) TCGA-E2-A15R-01 7 26225181 26225182 - AA NFE2L3 Frame_Shift_Ins p.R622Kfs*13 0.24 TCGA-E2-A15R-01 8 25292958 25292958 A G KCTD9 Missense_Mutation p.L245S 0.69 deleterious(0) probably_damaging(0.998) TCGA-E2-A15R-01 8 62555969 62555969 C T ASPH Missense_Mutation p.D245N 0.22 deleterious_low_confidence(0.04) benign(0.222) TCGA-E2-A15R-01 9 107457129 107457129 G T OR13D1 Nonsense_Mutation p.E143* 0.43 TCGA-E2-A15R-01 9 134354682 134354682 G A PRRC2B Missense_Mutation p.R1601Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-E2-A15R-01 9 34635777 34635777 C T SIGMAR1 Missense_Mutation p.R175Q 0.39 tolerated(0.06) possibly_damaging(0.643) TCGA-E2-A15R-01 X 136649808 136649808 C A ZIC3 Silent p.R320R 0.40 TCGA-E2-A15R-01 X 3030432 3030432 C T ARSF Silent p.N536N 0.40 TCGA-E2-A15R-01 X 70836846 70836846 A T CXCR3 Missense_Mutation p.L206H 0.40 deleterious(0) possibly_damaging(0.879) TCGA-E2-A15R-01 X 83723787 83723787 G A HDX Missense_Mutation p.S315L 0.03 tolerated(0.3) benign(0.001) TCGA-E2-A15S-01 10 85901316 85901316 T G GHITM Silent p.A20A 0.17 TCGA-E2-A15S-01 11 10876225 10876225 C G ZBED5 Missense_Mutation p.V90L 0.06 tolerated_low_confidence(0.22) benign(0.003) TCGA-E2-A15S-01 11 113853915 113853919 CCCCT - HTR3A Frame_Shift_Del p.P156Sfs*7 0.30 TCGA-E2-A15S-01 11 13410404 13410404 G A BTBD10 Missense_Mutation p.P468S 0.24 deleterious_low_confidence(0.03) benign(0.003) TCGA-E2-A15S-01 11 46744957 46744957 G T F2 Missense_Mutation p.A150S 0.39 tolerated(0.47) benign(0.057) TCGA-E2-A15S-01 11 68825062 68825062 G C TPCN2 Missense_Mutation p.W149S 0.37 deleterious(0.03) possibly_damaging(0.833) TCGA-E2-A15S-01 11 71276905 71276905 A C KRTAP5-10 Missense_Mutation p.K91T 0.33 unknown(0) TCGA-E2-A15S-01 12 104519903 104519903 G A NFYB Nonsense_Mutation p.Q74* 0.16 TCGA-E2-A15S-01 12 21679844 21679844 A G C12orf39 Missense_Mutation p.T11A 0.48 tolerated(0.66) benign(0.075) TCGA-E2-A15S-01 12 49499717 49499717 T C LMBR1L Missense_Mutation p.N61D 0.17 tolerated(0.47) benign(0.046) TCGA-E2-A15S-01 12 57987825 57987825 G T PIP4K2C Missense_Mutation p.Q64H 0.55 tolerated(1) benign(0.082) TCGA-E2-A15S-01 13 114839252 114839252 G A RASA3 Missense_Mutation p.T39M 0.05 deleterious(0) probably_damaging(0.956) TCGA-E2-A15S-01 13 31232168 31232168 A G USPL1 Missense_Mutation p.I652V 0.77 tolerated(0.55) benign(0.002) TCGA-E2-A15S-01 13 37016853 37016853 A G CCNA1 3'UTR 0.12 TCGA-E2-A15S-01 15 66829513 66829513 A C ZWILCH Missense_Mutation p.I496L 0.14 tolerated(0.77) possibly_damaging(0.824) TCGA-E2-A15S-01 16 67265611 67265611 C A FHOD1 Missense_Mutation p.A772S 0.39 tolerated(1) possibly_damaging(0.68) TCGA-E2-A15S-01 16 72045980 72045980 G A DHODH Missense_Mutation p.G18E 0.08 deleterious(0.03) possibly_damaging(0.891) TCGA-E2-A15S-01 17 48545782 48545782 G A CHAD Silent p.D131D 0.47 TCGA-E2-A15S-01 18 77726648 77726648 C G HSBP1L1 Missense_Mutation p.Q30E 0.09 tolerated(0.09) benign(0.083) TCGA-E2-A15S-01 19 41627952 41627952 G T CYP2F1 Missense_Mutation p.A246S 0.54 tolerated(0.51) benign(0.014) TCGA-E2-A15S-01 19 41889743 41889743 C T TMEM91 Silent p.L162L 0.17 TCGA-E2-A15S-01 19 42596350 42596350 C T POU2F2 Missense_Mutation p.G424E 0.39 deleterious_low_confidence(0.04) benign(0.091) TCGA-E2-A15S-01 19 54312951 54312951 C T NLRP12 Silent p.L654L 0.21 TCGA-E2-A15S-01 1 151823599 151823599 A G THEM5 Missense_Mutation p.F132L 0.37 deleterious(0) probably_damaging(0.979) TCGA-E2-A15S-01 1 165859581 165859581 G A UCK2 Silent p.Q80Q 0.15 TCGA-E2-A15S-01 1 181024535 181024535 T C MR1 3'UTR 0.38 TCGA-E2-A15S-01 1 185984569 185984569 G C HMCN1 Missense_Mutation p.V1637L 0.34 possibly_damaging(0.771) TCGA-E2-A15S-01 1 201294097 201294097 G A PKP1 Silent p.R642R 0.07 TCGA-E2-A15S-01 1 20977053 20977053 T G PINK1 Missense_Mutation p.L539V 0.34 deleterious(0) possibly_damaging(0.844) TCGA-E2-A15S-01 1 211545718 211545718 G - TRAF5 Frame_Shift_Del p.D451Mfs*32 0.25 TCGA-E2-A15S-01 1 248636948 248636948 G A OR2T3 Silent p.P99P 0.45 TCGA-E2-A15S-01 1 46078853 46078853 C T NASP Missense_Mutation p.S480L 0.35 deleterious(0) probably_damaging(0.997) TCGA-E2-A15S-01 1 67885843 67885843 T A SERBP1 Missense_Mutation p.E282V 0.03 deleterious(0) probably_damaging(0.944) TCGA-E2-A15S-01 1 71318542 71318542 C G PTGER3 Missense_Mutation p.E369Q 0.45 tolerated(0.53) benign(0.004) TCGA-E2-A15S-01 20 896760 896760 C T ANGPT4 Missense_Mutation p.C33Y 0.18 tolerated(0.12) benign(0.035) TCGA-E2-A15S-01 21 34799287 34799287 C T IFNGR2 Missense_Mutation p.T170M 0.08 tolerated(0.13) benign(0.014) TCGA-E2-A15S-01 21 45846569 45846569 C A TRPM2 Silent p.P1274P 0.08 TCGA-E2-A15S-01 22 40696504 40696504 C T TNRC6B Missense_Mutation p.P1252S 0.07 tolerated(0.06) benign(0.354) TCGA-E2-A15S-01 22 45804622 45804622 G A SMC1B Silent p.G89G 0.37 TCGA-E2-A15S-01 2 166179821 166179822 CT - SCN2A Frame_Shift_Del p.L611Vfs*35 0.28 TCGA-E2-A15S-01 2 169814622 169814622 A C ABCB11 Missense_Mutation p.V732G 0.36 tolerated(0.54) benign(0.028) TCGA-E2-A15S-01 2 211540487 211540487 C T CPS1 Silent p.N1405N 0.41 TCGA-E2-A15S-01 2 42990002 42990002 C G OXER1 3'UTR 0.82 TCGA-E2-A15S-01 2 69692475 69692475 C G AAK1 3'Flank 0.21 TCGA-E2-A15S-01 3 113786846 113786846 C T QTRTD1 Missense_Mutation p.S102L 0.03 tolerated(0.34) benign(0.012) TCGA-E2-A15S-01 3 165504019 165504031 GTATTCAAGGTTA - BCHE Frame_Shift_Del p.L529Qfs*6 0.16 TCGA-E2-A15S-01 3 191093245 191093245 A T CCDC50 Missense_Mutation p.Q281H 0.13 tolerated(0.31) possibly_damaging(0.465) TCGA-E2-A15S-01 3 41268806 41268806 T A CTNNB1 Silent p.S348S 0.44 TCGA-E2-A15S-01 3 46501161 46501161 A G LTF Silent p.C64C 0.42 TCGA-E2-A15S-01 3 49053757 49053757 G C DALRD3 Missense_Mutation p.A388G 0.16 tolerated(0.26) benign(0.013) TCGA-E2-A15S-01 4 15818139 15818139 T C CD38 Missense_Mutation p.V80A 0.45 tolerated(0.06) benign(0.165) TCGA-E2-A15S-01 4 48604082 48604082 T A FRYL Missense_Mutation p.L330F 0.14 deleterious(0) probably_damaging(0.984) TCGA-E2-A15S-01 4 81967479 81967479 C T BMP3 Missense_Mutation p.L302F 0.59 deleterious(0) probably_damaging(0.999) TCGA-E2-A15S-01 5 150905430 150905430 C A FAT2 Missense_Mutation p.G3469W 0.32 probably_damaging(1) TCGA-E2-A15S-01 5 150924168 150924172 GACTC TGGGCTGACTT FAT2 In_Frame_Ins p.P2174delinsQPT 0.54 TCGA-E2-A15S-01 5 89939720 89939720 A T GPR98 Missense_Mutation p.D885V 0.50 probably_damaging(0.937) TCGA-E2-A15S-01 6 20144468 20144468 G A MBOAT1 Silent p.L134L 0.12 TCGA-E2-A15S-01 6 26409847 26409847 T G BTN3A1 Missense_Mutation p.Y268D 0.17 tolerated(0.07) possibly_damaging(0.646) TCGA-E2-A15S-01 6 49753845 49753845 G T PGK2 Silent p.T352T 0.19 TCGA-E2-A15S-01 6 56357754 56357754 A C DST Nonsense_Mutation p.L4220* 0.05 TCGA-E2-A15S-01 6 7845540 7845540 C G BMP6 Missense_Mutation p.Q278E 0.53 tolerated(0.55) probably_damaging(0.963) TCGA-E2-A15S-01 7 47921536 47921536 C T PKD1L1 Missense_Mutation p.R1138Q 0.61 tolerated(0.15) possibly_damaging(0.576) TCGA-E2-A15S-01 7 98609952 98609952 G C TRRAP Missense_Mutation p.D3852H 0.11 probably_damaging(0.999) TCGA-E2-A15S-01 8 77765581 77765581 A T ZFHX4 Nonsense_Mutation p.K2142* 0.06 TCGA-E2-A15S-01 8 89209396 89209396 T C MMP16 Missense_Mutation p.N91S 0.08 tolerated(0.42) benign(0.026) TCGA-E2-A15S-01 9 135702351 135702351 G T AK8 Missense_Mutation p.A216D 0.26 tolerated(0.11) probably_damaging(0.971) TCGA-E2-A15S-01 9 73233887 73233887 C T TRPM3 Missense_Mutation p.V740M 0.07 deleterious(0.03) possibly_damaging(0.833) TCGA-E2-A15S-01 9 86421214 86421214 T A GKAP1 Intron 0.08 TCGA-E2-A15S-01 X 130409100 130409100 G T IGSF1 Nonsense_Mutation p.Y1120* 0.58 TCGA-E2-A15S-01 X 39937122 39937122 G A BCOR Missense_Mutation p.R21C 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E2-A15S-01 X 49107779 49107779 T A FOXP3 3'UTR 0.46 TCGA-E2-A15S-01 X 49137767 49137767 G A PPP1R3F Intron 0.14 TCGA-E2-A15S-01 X 50350476 50350476 G C SHROOM4 Missense_Mutation p.H1222Q 0.38 tolerated(0.16) benign(0.019) TCGA-E2-A15T-01 10 34620061 34620061 A T PARD3 Missense_Mutation p.D942E 0.45 tolerated(0.12) probably_damaging(0.997) TCGA-E2-A15T-01 11 118925916 118925916 C A HYOU1 Missense_Mutation p.V134L 1.00 deleterious(0.05) benign(0.258) TCGA-E2-A15T-01 11 67173127 67173127 G A TBC1D10C Missense_Mutation p.R141H 0.24 deleterious(0) probably_damaging(1) TCGA-E2-A15T-01 12 8023788 8023788 G T SLC2A14 5'UTR 0.41 TCGA-E2-A15T-01 13 32869412 32869412 C T FRY Missense_Mutation p.R2953C 0.44 deleterious(0.04) probably_damaging(0.973) TCGA-E2-A15T-01 14 45566145 45566145 A G PRPF39 Missense_Mutation p.Y169C 0.36 deleterious(0) probably_damaging(1) TCGA-E2-A15T-01 15 99672941 99672941 C T SYNM Missense_Mutation p.S1458L 0.21 deleterious(0.01) probably_damaging(0.938) TCGA-E2-A15T-01 16 67670628 67670628 G T CTCF Nonsense_Mutation p.E625* 1.00 TCGA-E2-A15T-01 1 100154698 100154698 G A PALMD Silent p.L294L 0.33 TCGA-E2-A15T-01 1 156828585 156828585 A G INSRR 5'UTR 0.58 TCGA-E2-A15T-01 1 228444554 228444554 G A OBSCN Silent p.A1596A 0.43 TCGA-E2-A15T-01 1 240374531 240374531 A G FMN2 Missense_Mutation p.K1354R 0.49 possibly_damaging(0.8) TCGA-E2-A15T-01 1 36359982 36359982 G A AGO1 Missense_Mutation p.R284H 0.47 tolerated(0.09) benign(0.002) TCGA-E2-A15T-01 20 50048860 50048860 G A NFATC2 Silent p.C822C 0.50 TCGA-E2-A15T-01 22 30639826 30639826 G A LIF Silent p.A141A 0.88 TCGA-E2-A15T-01 2 113161599 113161599 A T RGPD8 Missense_Mutation p.I407N 0.32 deleterious(0) probably_damaging(0.986) TCGA-E2-A15T-01 2 152394755 152394755 G A NEB Missense_Mutation p.R6966C 0.49 probably_damaging(0.989) TCGA-E2-A15T-01 2 18112662 18112662 C T KCNS3 Silent p.H129H 0.33 TCGA-E2-A15T-01 2 234601744 234601744 G T UGT1A6 Missense_Mutation p.V32F 0.52 tolerated(0.06) benign(0.34) TCGA-E2-A15T-01 2 242793270 242793270 G A PDCD1 Silent p.D269D 0.58 TCGA-E2-A15T-01 3 10106486 10106486 C T FANCD2 Missense_Mutation p.L699F 0.34 deleterious(0) probably_damaging(0.94) TCGA-E2-A15T-01 3 108474726 108474726 C T RETNLB Missense_Mutation p.G79S 0.20 deleterious(0) probably_damaging(1) TCGA-E2-A15T-01 3 113890710 113890710 C T DRD3 Missense_Mutation p.V44I 0.60 tolerated(0.21) benign(0.003) TCGA-E2-A15T-01 3 38938447 38938447 G A SCN11A Silent p.I764I 0.47 TCGA-E2-A15T-01 4 143226676 143226676 G A INPP4B Silent p.G146G 0.39 TCGA-E2-A15T-01 4 154471282 154471282 T C KIAA0922 Silent p.D99D 0.44 TCGA-E2-A15T-01 4 78783825 78783825 C T MRPL1 5'UTR 0.69 TCGA-E2-A15T-01 5 21817190 21817190 C - CDH12 Frame_Shift_Del p.G289Efs*3 0.08 TCGA-E2-A15T-01 6 138197170 138197170 C T TNFAIP3 Silent p.F224F 0.40 TCGA-E2-A15T-01 6 169626380 169626380 T C THBS2 Silent p.E811E 0.41 TCGA-E2-A15T-01 7 151807732 151807732 T A GALNT11 Splice_Site p.X360_splice 0.11 TCGA-E2-A15T-01 7 151970872 151970872 A G KMT2C Silent p.C310C 0.04 TCGA-E2-A15T-01 8 144919640 144919640 T C NRBP2 Missense_Mutation p.M339V 0.60 tolerated(0.48) benign(0) TCGA-E2-A15T-01 8 16944521 16944521 G C MICU3 Missense_Mutation p.D276H 0.38 deleterious(0.05) possibly_damaging(0.615) TCGA-E2-A15T-01 8 16948061 16948061 C T MICU3 Nonsense_Mutation p.Q286* 0.64 TCGA-E2-A15T-01 8 28595139 28595139 G C EXTL3 Missense_Mutation p.E794Q 0.34 deleterious(0) probably_damaging(0.946) TCGA-E2-A15T-01 9 124522318 124522318 G A DAB2IP Missense_Mutation p.G229D 0.38 deleterious(0) probably_damaging(1) TCGA-E2-A15T-01 9 137687132 137687132 C T COL5A1 Missense_Mutation p.R924W 0.37 unknown(0) TCGA-E2-A15T-01 9 33001425 33001425 G A APTX Intron 0.60 TCGA-E2-A15T-01 X 108718516 108718516 C A GUCY2F Missense_Mutation p.G217V 0.25 deleterious(0.04) probably_damaging(1) TCGA-E2-A15T-01 X 50377366 50377366 C T SHROOM4 Silent p.R569R 0.58 TCGA-E2-A1AZ-01 10 101419665 101419665 G T ENTPD7 5'UTR 0.14 TCGA-E2-A1AZ-01 10 134598422 134598422 A G NKX6-2 Nonstop_Mutation p.*278Rext*? 0.15 TCGA-E2-A1AZ-01 10 50960190 50960190 G A OGDHL Missense_Mutation p.R195W 0.12 deleterious(0.01) benign(0.152) TCGA-E2-A1AZ-01 10 5789754 5789754 G T FAM208B Missense_Mutation p.G1457V 0.27 deleterious(0) possibly_damaging(0.729) TCGA-E2-A1AZ-01 10 73767170 73767170 C A CHST3 Silent p.A127A 0.19 TCGA-E2-A1AZ-01 10 94110927 94110927 G A MARCH5 Missense_Mutation p.R267H 0.12 deleterious(0) probably_damaging(0.998) TCGA-E2-A1AZ-01 11 14526675 14526675 C T PSMA1 3'UTR 0.21 TCGA-E2-A1AZ-01 11 30433116 30433116 C T MPPED2 Missense_Mutation p.D262N 0.52 deleterious(0.03) probably_damaging(0.964) TCGA-E2-A1AZ-01 11 55798847 55798847 G A OR5AS1 Missense_Mutation p.R318H 0.42 deleterious(0.01) benign(0) TCGA-E2-A1AZ-01 11 64597091 64597091 G A CDC42BPG Silent p.R1273R 0.32 TCGA-E2-A1AZ-01 11 64597720 64597720 G A CDC42BPG Nonsense_Mutation p.R1105* 0.20 TCGA-E2-A1AZ-01 11 65211932 65211932 C A NEAT1 RNA 0.26 TCGA-E2-A1AZ-01 11 67786655 67786655 G A ALDH3B1 Silent p.L136L 0.14 TCGA-E2-A1AZ-01 11 70338443 70338443 C A SHANK2 Missense_Mutation p.M813I 0.44 tolerated(0.79) benign(0.013) TCGA-E2-A1AZ-01 11 73809103 73809103 G C C2CD3 Missense_Mutation p.P977R 0.21 tolerated(0.7) benign(0.007) TCGA-E2-A1AZ-01 12 108589967 108589967 G C WSCD2 Missense_Mutation p.V120L 0.47 tolerated(0.6) benign(0.001) TCGA-E2-A1AZ-01 12 108589988 108589988 C T WSCD2 Nonsense_Mutation p.R127* 0.43 TCGA-E2-A1AZ-01 12 121148295 121148295 G A UNC119B Silent p.P6P 0.43 TCGA-E2-A1AZ-01 12 41337930 41337930 C A CNTN1 Silent p.I547I 0.24 TCGA-E2-A1AZ-01 13 36348770 36348770 A T DCLK1 3'UTR 0.36 TCGA-E2-A1AZ-01 15 65678395 65678395 T A IGDCC4 Missense_Mutation p.E985V 0.30 deleterious(0) possibly_damaging(0.739) TCGA-E2-A1AZ-01 16 30392785 30392785 C A SEPT1 Silent p.P110P 0.22 TCGA-E2-A1AZ-01 16 67263010 67263010 G T TMEM208 Silent p.R172R 0.14 TCGA-E2-A1AZ-01 17 40065885 40065885 C T ACLY Silent p.G138G 0.09 TCGA-E2-A1AZ-01 17 49302495 49302495 C G MBTD1 Missense_Mutation p.E10Q 0.47 deleterious(0.03) probably_damaging(0.968) TCGA-E2-A1AZ-01 17 49302539 49302539 C T MBTD1 5'UTR 0.45 TCGA-E2-A1AZ-01 17 55028115 55028116 TT - COIL Frame_Shift_Del p.K163Efs*4 0.19 TCGA-E2-A1AZ-01 17 73748569 73748569 G A ITGB4 Missense_Mutation p.G1340E 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-E2-A1AZ-01 17 7577077 7577077 C A TP53 Missense_Mutation p.E287D 0.45 tolerated(0.24) benign(0.059) TCGA-E2-A1AZ-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.43 deleterious(0) probably_damaging(0.947) TCGA-E2-A1AZ-01 18 61304849 61304849 T A SERPINB4 3'UTR 0.17 TCGA-E2-A1AZ-01 18 61304927 61304927 T C SERPINB4 3'UTR 0.12 TCGA-E2-A1AZ-01 18 61304956 61304956 T C SERPINB4 Silent p.P390P 0.09 TCGA-E2-A1AZ-01 19 51961309 51961309 G C SIGLEC8 Missense_Mutation p.I111M 0.43 deleterious(0) probably_damaging(1) TCGA-E2-A1AZ-01 19 53208630 53208630 G C ZNF611 Missense_Mutation p.H560D 0.39 deleterious(0) probably_damaging(0.998) TCGA-E2-A1AZ-01 19 53668314 53668314 G A ZNF665 Missense_Mutation p.R477W 0.17 tolerated(0.06) possibly_damaging(0.888) TCGA-E2-A1AZ-01 1 10364067 10364067 C T KIF1B Intron 0.40 TCGA-E2-A1AZ-01 1 150054883 150054883 A C VPS45 Silent p.R340R 0.13 TCGA-E2-A1AZ-01 1 155255046 155255046 G T HCN3 Missense_Mutation p.G394C 0.15 deleterious(0) probably_damaging(1) TCGA-E2-A1AZ-01 1 175046741 175046741 C G TNN Missense_Mutation p.Q63E 0.21 tolerated(0.28) benign(0.003) TCGA-E2-A1AZ-01 1 233482294 233482294 A G MLK4 Silent p.T304T 0.22 TCGA-E2-A1AZ-01 1 75229641 75229641 C G TYW3 Missense_Mutation p.I208M 0.36 tolerated(0.11) benign(0.043) TCGA-E2-A1AZ-01 20 46282248 46282248 T C NCOA3 3'UTR 0.31 TCGA-E2-A1AZ-01 21 44485575 44485575 C A CBS Missense_Mutation p.R196S 0.08 tolerated(0.52) benign(0.01) TCGA-E2-A1AZ-01 2 128250923 128250923 T G IWS1 Silent p.S621S 0.18 TCGA-E2-A1AZ-01 2 136700974 136700974 G A DARS Nonsense_Mutation p.Q133* 0.22 TCGA-E2-A1AZ-01 2 136700975 136700975 C A DARS Missense_Mutation p.Q132H 0.22 tolerated(0.24) probably_damaging(0.93) TCGA-E2-A1AZ-01 2 153575347 153575347 G T ARL6IP6 Missense_Mutation p.R70L 0.16 tolerated_low_confidence(0.18) benign(0.01) TCGA-E2-A1AZ-01 2 160006902 160006902 A C TANC1 Missense_Mutation p.I173L 0.16 tolerated(0.11) benign(0.063) TCGA-E2-A1AZ-01 2 46587815 46587815 G C EPAS1 Missense_Mutation p.E165Q 0.26 tolerated(0.08) probably_damaging(0.944) TCGA-E2-A1AZ-01 2 65217239 65217239 G T SLC1A4 Silent p.G154G 0.53 TCGA-E2-A1AZ-01 2 99907849 99907849 T C LYG1 Missense_Mutation p.M62V 0.24 deleterious(0.01) benign(0.164) TCGA-E2-A1AZ-01 3 128292138 128292138 G A C3orf27 Silent p.F145F 0.14 TCGA-E2-A1AZ-01 3 130116760 130116760 G T COL6A5 Missense_Mutation p.R1301L 0.24 deleterious(0) possibly_damaging(0.806) TCGA-E2-A1AZ-01 3 133347430 133347430 G C TOPBP1 Missense_Mutation p.Q890E 0.21 tolerated(0.28) benign(0.003) TCGA-E2-A1AZ-01 3 14559372 14559372 C T GRIP2 RNA 0.12 TCGA-E2-A1AZ-01 3 48627949 48627949 C A COL7A1 Missense_Mutation p.A617S 0.36 unknown(0) TCGA-E2-A1AZ-01 4 110610542 110610542 G A CASP6 Missense_Mutation p.P276S 0.15 deleterious(0) probably_damaging(1) TCGA-E2-A1AZ-01 4 15444474 15444474 G A C1QTNF7 3'UTR 0.52 TCGA-E2-A1AZ-01 5 10290748 10290771 TGCCTGCATCAACGGGGGATTTGG - CMBL In_Frame_Del p.T35_G42del 0.22 TCGA-E2-A1AZ-01 6 27834744 27834744 C G HIST1H1B Missense_Mutation p.K188N 0.23 deleterious(0) unknown(0) TCGA-E2-A1AZ-01 6 43188323 43188323 G C CUL9 Missense_Mutation p.E2137Q 0.25 deleterious(0.02) benign(0.084) TCGA-E2-A1AZ-01 6 49438722 49438722 G C CENPQ Silent p.L46L 0.20 TCGA-E2-A1AZ-01 7 116166457 116166457 G A CAV1 Intron 0.43 TCGA-E2-A1AZ-01 7 148454195 148454195 C T CUL1 Missense_Mutation p.R146C 0.22 deleterious(0) benign(0.035) TCGA-E2-A1AZ-01 7 150645546 150645546 C T KCNH2 Missense_Mutation p.R893K 0.30 tolerated(0.16) benign(0.001) TCGA-E2-A1AZ-01 7 150700856 150700856 G C NOS3 Intron 0.39 TCGA-E2-A1AZ-01 7 2771355 2771355 C A GNA12 Silent p.L202L 0.24 TCGA-E2-A1AZ-01 7 31690768 31690768 G C CCDC129 Missense_Mutation p.E892Q 0.41 deleterious(0) probably_damaging(0.977) TCGA-E2-A1AZ-01 7 73100970 73100970 C A WBSCR22 Silent p.R31R 0.24 TCGA-E2-A1AZ-01 8 110461681 110461681 A C PKHD1L1 Missense_Mutation p.Y2047S 0.13 tolerated(0.88) benign(0.003) TCGA-E2-A1AZ-01 8 133182583 133182583 G A KCNQ3 Silent p.F411F 0.33 TCGA-E2-A1AZ-01 8 143546131 143546131 G A BAI1 Missense_Mutation p.R191H 0.33 deleterious(0.01) possibly_damaging(0.522) TCGA-E2-A1AZ-01 8 24300020 24300020 G C ADAM7 Silent p.L29L 0.16 TCGA-E2-A1AZ-01 8 86389385 86389385 G C CA2 Missense_Mutation p.G182R 0.32 tolerated(0.06) possibly_damaging(0.46) TCGA-E2-A1AZ-01 9 100862335 100862335 G A TRIM14 Missense_Mutation p.L139F 0.24 tolerated(0.19) possibly_damaging(0.794) TCGA-E2-A1AZ-01 9 139820165 139820172 CGGGAGCA - TRAF2 Frame_Shift_Del p.E441Dfs*2 0.36 TCGA-E2-A1AZ-01 9 140400143 140400143 C T PNPLA7 Missense_Mutation p.E466K 0.48 tolerated(0.23) benign(0.287) TCGA-E2-A1AZ-01 X 105152799 105152799 C A NRK Missense_Mutation p.P390H 0.27 deleterious(0) possibly_damaging(0.847) TCGA-E2-A1AZ-01 X 111097215 111097215 C A TRPC5 Silent p.L340L 0.26 TCGA-E2-A1AZ-01 X 123556236 123556236 C T TENM1 Missense_Mutation p.E1453K 0.15 deleterious(0.01) benign(0.081) TCGA-E2-A1AZ-01 X 48858677 48858677 G C GRIPAP1 5'Flank 0.53 TCGA-E2-A1B0-01 10 26463156 26463156 A G MYO3A Silent p.E1321E 0.27 TCGA-E2-A1B0-01 10 5435789 5435789 C T TUBAL3 Silent p.S344S 0.25 TCGA-E2-A1B0-01 10 70174772 70174772 T C DNA2 3'UTR 0.21 TCGA-E2-A1B0-01 10 76788710 76788710 A G KAT6B Silent p.G1376G 0.21 TCGA-E2-A1B0-01 11 60482871 60482871 T A MS4A8 Missense_Mutation p.I246N 0.05 deleterious(0.01) benign(0.062) TCGA-E2-A1B0-01 11 67020978 67020978 G A KDM2A Missense_Mutation p.S996N 0.21 deleterious(0) benign(0.439) TCGA-E2-A1B0-01 11 77336038 77336038 C T CLNS1A Missense_Mutation p.D148N 0.04 tolerated(0.23) benign(0.014) TCGA-E2-A1B0-01 11 93913090 93913090 G T PANX1 Missense_Mutation p.V290L 0.20 tolerated(0.39) benign(0.012) TCGA-E2-A1B0-01 12 57602874 57602874 G A LRP1 Missense_Mutation p.V4052M 0.16 probably_damaging(0.979) TCGA-E2-A1B0-01 13 36700097 36700097 G A DCLK1 Missense_Mutation p.R60C 0.18 deleterious(0.02) unknown(0) TCGA-E2-A1B0-01 14 23245482 23245482 G A SLC7A7 Silent p.I272I 0.16 TCGA-E2-A1B0-01 14 96871122 96871122 G A AK7 Missense_Mutation p.R108H 0.11 tolerated(1) benign(0.001) TCGA-E2-A1B0-01 15 43817021 43817021 C T MAP1A Missense_Mutation p.A1117V 0.15 benign(0.014) TCGA-E2-A1B0-01 15 78453949 78453949 G A IDH3A Missense_Mutation p.G106S 0.24 deleterious(0) probably_damaging(1) TCGA-E2-A1B0-01 15 81221455 81221455 A G KIAA1199 Missense_Mutation p.D851G 0.19 tolerated(0.56) benign(0.297) TCGA-E2-A1B0-01 16 89778380 89778380 G T VPS9D1 Intron 0.12 TCGA-E2-A1B0-01 17 16330833 16330833 T G TRPV2 Missense_Mutation p.L441R 0.43 deleterious(0.01) probably_damaging(0.956) TCGA-E2-A1B0-01 17 18022852 18022852 C T MYO15A Silent p.Y246Y 0.29 TCGA-E2-A1B0-01 17 29622958 29622958 G C OMG Missense_Mutation p.S131C 0.07 deleterious(0) probably_damaging(0.984) TCGA-E2-A1B0-01 17 40065254 40065254 T A ACLY Missense_Mutation p.I202F 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-E2-A1B0-01 17 73750743 73750743 T C ITGB4 Missense_Mutation p.Y1469H 0.09 tolerated_low_confidence(0.41) benign(0.013) TCGA-E2-A1B0-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.51 deleterious(0) probably_damaging(1) TCGA-E2-A1B0-01 19 2987728 2987728 G T TLE6 Nonsense_Mutation p.E189* 0.32 TCGA-E2-A1B0-01 19 34832983 34832983 C T KIAA0355 Missense_Mutation p.P715L 0.08 tolerated_low_confidence(0.26) benign(0) TCGA-E2-A1B0-01 19 44590779 44590779 C T ZNF284 Missense_Mutation p.S383F 0.06 deleterious(0.05) benign(0.294) TCGA-E2-A1B0-01 19 52376691 52376691 T C ZNF577 Silent p.K184K 0.17 TCGA-E2-A1B0-01 19 6919734 6919734 C T EMR1 Silent p.I532I 0.23 TCGA-E2-A1B0-01 19 9048251 9048252 - GT MUC16 Frame_Shift_Ins p.P11127Hfs*10 0.10 TCGA-E2-A1B0-01 1 12887489 12887489 T C PRAMEF11 Missense_Mutation p.Y123C 0.23 tolerated(0.28) benign(0.004) TCGA-E2-A1B0-01 1 160063723 160063723 G C IGSF8 Silent p.A227A 0.16 TCGA-E2-A1B0-01 1 176671852 176671852 G A PAPPA2 Missense_Mutation p.G1116R 0.06 deleterious(0) probably_damaging(1) TCGA-E2-A1B0-01 1 21924472 21924472 C T RAP1GAP Silent p.E719E 0.30 TCGA-E2-A1B0-01 1 231155551 231155551 G T FAM89A 3'UTR 0.20 TCGA-E2-A1B0-01 1 247769043 247769043 T G OR2G3 Missense_Mutation p.D52E 0.54 tolerated(0.1) benign(0.012) TCGA-E2-A1B0-01 21 44483098 44483098 C T CBS Missense_Mutation p.G307S 0.15 deleterious(0) probably_damaging(1) TCGA-E2-A1B0-01 21 45742920 45742920 C T PFKL Silent p.V495V 0.16 TCGA-E2-A1B0-01 22 25115535 25115535 C T PIWIL3 Silent p.A851A 0.17 TCGA-E2-A1B0-01 2 132290269 132290269 T C CCDC74A Missense_Mutation p.L264P 0.11 tolerated(0.39) benign(0.003) TCGA-E2-A1B0-01 2 152573967 152573967 A G NEB Missense_Mutation p.I262T 0.22 benign(0.437) TCGA-E2-A1B0-01 3 126153123 126153123 C T CCDC37 Silent p.I509I 0.31 TCGA-E2-A1B0-01 3 128810076 128810076 T C RAB43 Missense_Mutation p.N168D 0.42 deleterious(0) possibly_damaging(0.68) TCGA-E2-A1B0-01 3 143214222 143214222 C T SLC9A9 Silent p.T386T 0.05 TCGA-E2-A1B0-01 3 36873851 36873851 C T TRANK1 Missense_Mutation p.R2364Q 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-E2-A1B0-01 4 70156383 70156383 C T UGT2B28 Silent p.I388I 0.05 TCGA-E2-A1B0-01 5 31294332 31294332 C A CDH6 Nonsense_Mutation p.Y164* 0.19 TCGA-E2-A1B0-01 5 75913348 75913348 T A F2RL2 3'UTR 0.27 TCGA-E2-A1B0-01 6 111688818 111688818 C A REV3L Missense_Mutation p.C2058F 0.27 tolerated(0.71) benign(0) TCGA-E2-A1B0-01 6 148852768 148852768 G A SASH1 Missense_Mutation p.R512H 0.14 deleterious(0.03) probably_damaging(1) TCGA-E2-A1B0-01 6 33653896 33653896 G A ITPR3 Missense_Mutation p.D1912N 0.22 deleterious(0) possibly_damaging(0.448) TCGA-E2-A1B0-01 6 39847226 39847226 G A DAAM2 Silent p.K606K 0.30 TCGA-E2-A1B0-01 7 143657300 143657300 T C OR2F1 Silent p.P79P 0.06 TCGA-E2-A1B0-01 7 150937202 150937202 C T SMARCD3 Missense_Mutation p.S390N 0.26 tolerated(1) benign(0.001) TCGA-E2-A1B0-01 8 113529370 113529370 A G CSMD3 Missense_Mutation p.V1550A 0.09 tolerated(0.1) benign(0.37) TCGA-E2-A1B0-01 8 124710745 124710745 A C ANXA13 Missense_Mutation p.L122V 0.20 tolerated(0.26) possibly_damaging(0.54) TCGA-E2-A1B0-01 8 125580892 125580892 A G MTSS1 Intron 0.05 TCGA-E2-A1B0-01 8 13357027 13357027 T C DLC1 Missense_Mutation p.D185G 0.28 tolerated_low_confidence(0.31) benign(0) TCGA-E2-A1B0-01 8 37602094 37602094 G C ERLIN2 Missense_Mutation p.D102H 0.08 deleterious(0) possibly_damaging(0.831) TCGA-E2-A1B0-01 X 110366476 110366476 C T PAK3 Missense_Mutation p.R49C 0.22 tolerated(0.18) probably_damaging(0.961) TCGA-E2-A1B0-01 X 125685408 125685408 G A DCAF12L1 Missense_Mutation p.S395L 0.09 tolerated(0.27) benign(0) TCGA-E2-A1B0-01 X 13734634 13734634 A G TRAPPC2 Intron 0.17 TCGA-E2-A1B0-01 X 41206668 41206668 G A DDX3X Missense_Mutation p.G625R 0.07 deleterious(0.04) unknown(0) TCGA-E2-A1B1-01 10 118318677 118318677 C T PNLIP Silent p.F314F 0.18 TCGA-E2-A1B1-01 10 91195879 91195879 G A SLC16A12 Missense_Mutation p.S409L 0.06 deleterious(0.01) possibly_damaging(0.737) TCGA-E2-A1B1-01 11 5373318 5373318 G A OR51B6 Missense_Mutation p.R194H 0.05 tolerated(0.34) benign(0.022) TCGA-E2-A1B1-01 11 57466825 57466825 C G ZDHHC5 Missense_Mutation p.S639R 0.12 tolerated(0.15) benign(0.134) TCGA-E2-A1B1-01 11 92533820 92533820 C G FAT3 Missense_Mutation p.D2547E 0.27 probably_damaging(0.991) TCGA-E2-A1B1-01 12 64174918 64174918 G A TMEM5 Missense_Mutation p.D97N 0.04 tolerated(0.16) benign(0.006) TCGA-E2-A1B1-01 12 72315153 72315153 C T TBC1D15 Silent p.I591I 0.05 TCGA-E2-A1B1-01 12 77239549 77239549 G C ZDHHC17 Missense_Mutation p.D464H 0.07 deleterious(0) possibly_damaging(0.56) TCGA-E2-A1B1-01 12 90013924 90013924 G A ATP2B1 Nonsense_Mutation p.Q561* 0.03 TCGA-E2-A1B1-01 12 90018057 90018057 A C ATP2B1 Missense_Mutation p.F416C 0.13 deleterious(0.02) possibly_damaging(0.849) TCGA-E2-A1B1-01 13 103346743 103346743 C G METTL21C Missense_Mutation p.D36H 0.07 tolerated(0.08) benign(0.007) TCGA-E2-A1B1-01 13 96555315 96555315 C T UGGT2 Splice_Site p.X766_splice 0.24 TCGA-E2-A1B1-01 14 105409502 105409502 G C AHNAK2 Missense_Mutation p.L4096V 0.08 possibly_damaging(0.664) TCGA-E2-A1B1-01 14 22392562 22392562 C A TRAV14DV4 Missense_Mutation p.P29T 0.22 TCGA-E2-A1B1-01 15 52611294 52611294 T C MYO5A Missense_Mutation p.K1708E 0.11 deleterious(0) probably_damaging(0.999) TCGA-E2-A1B1-01 15 56141078 56141078 G A NEDD4 Missense_Mutation p.P799S 0.18 deleterious(0) probably_damaging(1) TCGA-E2-A1B1-01 15 88476388 88476388 G A NTRK3 Missense_Mutation p.R582W 0.20 deleterious(0) probably_damaging(0.999) TCGA-E2-A1B1-01 16 3432925 3432925 G C ZSCAN32 Missense_Mutation p.S462C 0.08 deleterious(0) probably_damaging(0.986) TCGA-E2-A1B1-01 16 65016151 65016151 G A CDH11 Silent p.N351N 0.13 TCGA-E2-A1B1-01 17 41180658 41180658 G C RND2 Missense_Mutation p.E215D 0.07 tolerated(0.53) benign(0.139) TCGA-E2-A1B1-01 17 49067165 49067165 C T SPAG9 Missense_Mutation p.E896K 0.03 deleterious(0.03) benign(0.186) TCGA-E2-A1B1-01 17 53345424 53345424 G A HLF Missense_Mutation p.C143Y 0.62 tolerated(0.57) possibly_damaging(0.898) TCGA-E2-A1B1-01 17 71412001 71412001 C T SDK2 Missense_Mutation p.A773T 0.05 deleterious(0.01) probably_damaging(0.946) TCGA-E2-A1B1-01 17 7579717 7579717 G A TP53 Missense_Mutation p.P27S 0.14 tolerated(0.08) benign(0.219) TCGA-E2-A1B1-01 17 80206870 80206870 C T CSNK1D Missense_Mutation p.V360I 0.12 tolerated_low_confidence(0.62) benign(0) TCGA-E2-A1B1-01 17 8064147 8064147 C G VAMP2 3'UTR 0.10 TCGA-E2-A1B1-01 18 7017348 7017348 C T LAMA1 Missense_Mutation p.V913M 0.06 tolerated(0.07) benign(0.149) TCGA-E2-A1B1-01 18 70416259 70416259 C T NETO1 3'UTR 0.05 TCGA-E2-A1B1-01 18 74635103 74635103 C G ZNF236 Missense_Mutation p.L1210V 0.06 deleterious(0.03) benign(0.248) TCGA-E2-A1B1-01 19 10286249 10286249 C T DNMT1 Silent p.S205S 0.09 TCGA-E2-A1B1-01 19 17487876 17487876 G A PLVAP Silent p.L74L 0.05 TCGA-E2-A1B1-01 1 159923409 159923409 G A SLAMF9 Silent p.S27S 0.15 TCGA-E2-A1B1-01 1 177908851 177908851 C T SEC16B Missense_Mutation p.G730E 0.08 tolerated(1) benign(0.044) TCGA-E2-A1B1-01 1 186291717 186291717 C A TPR Missense_Mutation p.R2100I 0.09 benign(0.084) TCGA-E2-A1B1-01 1 203154335 203154335 G C CHI3L1 Silent p.G78G 0.30 TCGA-E2-A1B1-01 1 215963503 215963503 C T USH2A Silent p.E3360E 0.05 TCGA-E2-A1B1-01 1 232649717 232649717 C T SIPA1L2 Missense_Mutation p.V457I 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-E2-A1B1-01 1 243668570 243668570 G A AKT3 Missense_Mutation p.S474F 0.06 tolerated(0.05) probably_damaging(0.925) TCGA-E2-A1B1-01 1 24996733 24996733 C T SRRM1 Missense_Mutation p.P776L 0.14 unknown(0) TCGA-E2-A1B1-01 1 45269604 45269604 C T PLK3 Missense_Mutation p.A389V 0.24 tolerated(0.35) benign(0.001) TCGA-E2-A1B1-01 1 63284698 63284698 G C ATG4C Missense_Mutation p.L139F 0.05 tolerated(0.29) benign(0.272) TCGA-E2-A1B1-01 1 93826119 93826119 C T DR1 Nonsense_Mutation p.Q152* 0.06 TCGA-E2-A1B1-01 1 94639491 94639491 C G ARHGAP29 Missense_Mutation p.Q1240H 0.05 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-E2-A1B1-01 20 33567485 33567485 G A MYH7B Missense_Mutation p.E116K 0.06 benign(0.308) TCGA-E2-A1B1-01 20 44313528 44313528 C A WFDC10B Nonsense_Mutation p.E71* 0.09 TCGA-E2-A1B1-01 2 132240504 132240504 C G TUBA3D 3'UTR 0.20 TCGA-E2-A1B1-01 2 182363469 182363469 G A ITGA4 Missense_Mutation p.E554K 0.04 tolerated(0.9) benign(0) TCGA-E2-A1B1-01 2 230643194 230643194 G A TRIP12 Silent p.R1698R 0.15 TCGA-E2-A1B1-01 3 121208668 121208668 C T POLQ Missense_Mutation p.R1037K 0.07 tolerated_low_confidence(0.99) benign(0) TCGA-E2-A1B1-01 4 151242470 151242470 G A LRBA Silent p.L2512L 0.07 TCGA-E2-A1B1-01 4 2986263 2986263 C T GRK4 Missense_Mutation p.R26C 0.15 deleterious(0) probably_damaging(0.999) TCGA-E2-A1B1-01 4 87728895 87728895 C G PTPN13 Missense_Mutation p.Q2315E 0.11 deleterious(0) possibly_damaging(0.837) TCGA-E2-A1B1-01 5 138658393 138658393 G A MATR3 Missense_Mutation p.E629K 0.07 tolerated(0.07) benign(0.142) TCGA-E2-A1B1-01 5 45267308 45267308 C T HCN1 Missense_Mutation p.D556N 0.06 deleterious(0.03) possibly_damaging(0.779) TCGA-E2-A1B1-01 6 132618330 132618330 G A MOXD1 Silent p.L602L 0.05 TCGA-E2-A1B1-01 6 28501742 28501742 C T GPX5 Missense_Mutation p.S155F 0.07 deleterious(0.04) possibly_damaging(0.773) TCGA-E2-A1B1-01 6 79665349 79665351 TTC - PHIP In_Frame_Del p.K1278del 0.14 TCGA-E2-A1B1-01 7 105672875 105672875 G C CDHR3 Missense_Mutation p.G797A 0.06 deleterious(0) probably_damaging(0.999) TCGA-E2-A1B1-01 7 130147637 130147637 C G MEST 3'Flank 0.04 TCGA-E2-A1B1-01 7 72717530 72717530 G C NSUN5 Intron 0.08 TCGA-E2-A1B1-01 8 110984956 110984956 C T KCNV1 Silent p.Q174Q 0.05 TCGA-E2-A1B1-01 8 59346963 59346963 T C UBXN2B Silent p.L145L 0.09 TCGA-E2-A1B1-01 9 37744488 37744488 G C FRMPD1 Missense_Mutation p.R820T 0.06 tolerated(0.16) benign(0.012) TCGA-E2-A1B1-01 9 37745156 37745156 G A FRMPD1 Missense_Mutation p.E1043K 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.488) TCGA-E2-A1B1-01 X 117959237 117959237 C G ZCCHC12 Missense_Mutation p.N10K 0.16 tolerated(0.08) benign(0.082) TCGA-E2-A1B1-01 X 1585110 1585110 C T P2RY8 Missense_Mutation p.M114I 0.07 tolerated(0.08) possibly_damaging(0.615) TCGA-E2-A1B1-01 X 84510357 84510357 G A ZNF711 Missense_Mutation p.D58N 0.05 tolerated(0.09) benign(0.318) TCGA-E2-A1B4-01 10 61011227 61011227 T C FAM13C Intron 0.41 TCGA-E2-A1B4-01 12 123345688 123345688 T G HIP1R Missense_Mutation p.D967E 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-E2-A1B4-01 13 43810874 43810874 C A ENOX1 Nonsense_Mutation p.E538* 0.39 TCGA-E2-A1B4-01 14 52164840 52164840 C G FRMD6 Intron 0.32 TCGA-E2-A1B4-01 16 57786814 57786814 G A KATNB1 Missense_Mutation p.D277N 0.70 deleterious(0.01) probably_damaging(0.991) TCGA-E2-A1B4-01 17 12897055 12897055 G A ELAC2 Silent p.L734L 0.30 TCGA-E2-A1B4-01 17 4837651 4837651 G C GP1BA Missense_Mutation p.R584S 0.36 deleterious(0) unknown(0) TCGA-E2-A1B4-01 17 48433561 48433561 T C XYLT2 Missense_Mutation p.I474T 0.40 deleterious(0) probably_damaging(0.999) TCGA-E2-A1B4-01 17 7478063 7478063 G C EIF4A1 Intron 0.33 TCGA-E2-A1B4-01 17 7983693 7983693 G A AC129492.6 Missense_Mutation p.G125E 0.08 unknown(0) TCGA-E2-A1B4-01 18 28934692 28934692 G C DSG1 Missense_Mutation p.D845H 0.41 deleterious(0) possibly_damaging(0.547) TCGA-E2-A1B4-01 19 17883272 17883272 C T FCHO1 Nonsense_Mutation p.Q201* 0.45 TCGA-E2-A1B4-01 19 1802548 1802548 A C ATP8B3 Missense_Mutation p.L334R 0.29 deleterious(0) possibly_damaging(0.873) TCGA-E2-A1B4-01 19 46998318 46998318 C T PNMAL2 Silent p.T135T 0.33 TCGA-E2-A1B4-01 1 17355201 17355201 T C SDHB Missense_Mutation p.N106S 0.34 deleterious(0.05) benign(0.041) TCGA-E2-A1B4-01 1 233136233 233136233 C A PCNXL2 Nonsense_Mutation p.E1716* 0.35 TCGA-E2-A1B4-01 1 5964847 5964847 C T NPHP4 Missense_Mutation p.R658Q 0.38 tolerated(0.38) benign(0.009) TCGA-E2-A1B4-01 1 85018792 85018792 C T CTBS 3'UTR 0.36 TCGA-E2-A1B4-01 21 10921971 10921971 G A TPTE Missense_Mutation p.A351V 0.16 tolerated(0.4) benign(0.158) TCGA-E2-A1B4-01 21 28305265 28305265 G T ADAMTS5 Missense_Mutation p.N596K 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-E2-A1B4-01 22 50596677 50596677 C A MOV10L1 Intron 0.46 TCGA-E2-A1B4-01 2 138000059 138000059 G A THSD7B Missense_Mutation p.R728H 0.34 deleterious(0) possibly_damaging(0.851) TCGA-E2-A1B4-01 2 239049614 239049614 C T KLHL30 Silent p.R73R 0.56 TCGA-E2-A1B4-01 2 61492669 61492669 A G USP34 Missense_Mutation p.Y1881H 0.37 deleterious(0.03) probably_damaging(0.99) TCGA-E2-A1B4-01 2 85836051 85836051 G A C2orf68 3'UTR 0.34 TCGA-E2-A1B4-01 3 111304209 111304209 C A CD96 Missense_Mutation p.T280K 0.38 tolerated(0.17) possibly_damaging(0.565) TCGA-E2-A1B4-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.35 deleterious(0.04) probably_damaging(0.96) TCGA-E2-A1B4-01 3 51393602 51393602 C A DOCK3 Missense_Mutation p.S1444R 0.34 tolerated(0.2) probably_damaging(0.987) TCGA-E2-A1B4-01 4 155283 155283 C T ZNF718 RNA 0.37 TCGA-E2-A1B4-01 5 13902213 13902213 G A DNAH5 Missense_Mutation p.A560V 0.28 benign(0.001) TCGA-E2-A1B4-01 5 176004515 176004515 C T CDHR2 Missense_Mutation p.A437V 0.33 tolerated(0.09) benign(0.001) TCGA-E2-A1B4-01 5 176963594 176963594 T G FAM193B Missense_Mutation p.T281P 0.16 tolerated(0.48) benign(0.009) TCGA-E2-A1B4-01 5 56178085 56178085 C T MAP3K1 Nonsense_Mutation p.Q1020* 0.47 TCGA-E2-A1B4-01 5 56178466 56178467 - T MAP3K1 Frame_Shift_Ins p.T1148Nfs*3 0.26 TCGA-E2-A1B4-01 8 11177089 11177089 T G MTMR9 Intron 0.41 TCGA-E2-A1B4-01 8 144941802 144941802 G A EPPK1 Missense_Mutation p.R1874C 0.37 benign(0.001) TCGA-E2-A1B4-01 8 145584626 145584626 A G SLC52A2 Missense_Mutation p.Y430C 0.42 deleterious(0.01) probably_damaging(0.954) TCGA-E2-A1B4-01 9 116346360 116346360 G A RGS3 Missense_Mutation p.E890K 0.43 deleterious(0.01) possibly_damaging(0.698) TCGA-E2-A1B4-01 9 127563854 127563854 G T OLFML2A Missense_Mutation p.K277N 0.31 deleterious(0.01) possibly_damaging(0.813) TCGA-E2-A1B4-01 9 2088587 2088587 G A SMARCA2 Missense_Mutation p.E953K 0.73 possibly_damaging(0.621) TCGA-E2-A1B4-01 X 101769050 101769050 T G TMSB15A Missense_Mutation p.I35L 0.35 deleterious(0.02) benign(0.394) TCGA-E2-A1B4-01 X 123211834 123211834 A G STAG2 Missense_Mutation p.K901E 0.34 deleterious(0) probably_damaging(1) TCGA-E2-A1B4-01 X 38008849 38008849 T C SRPX 3'UTR 0.48 TCGA-E2-A1B5-01 10 8115965 8115966 - A GATA3 Frame_Shift_Ins p.M439Nfs*69 0.16 TCGA-E2-A1B5-01 11 73429669 73429670 - A RAB6A Intron 0.10 TCGA-E2-A1B5-01 11 93886744 93886746 AGA - PANX1 In_Frame_Del p.K91del 0.21 TCGA-E2-A1B5-01 12 101603399 101603399 G A SLC5A8 Silent p.S76S 0.07 TCGA-E2-A1B5-01 12 101736365 101736365 G A UTP20 Missense_Mutation p.E1415K 0.05 tolerated(0.19) benign(0) TCGA-E2-A1B5-01 12 118599615 118599615 C T TAOK3 Missense_Mutation p.R706Q 0.07 deleterious(0) probably_damaging(0.922) TCGA-E2-A1B5-01 12 335669 335669 G A SLC6A13 Missense_Mutation p.A316V 0.06 tolerated(0.5) possibly_damaging(0.555) TCGA-E2-A1B5-01 12 93135273 93135273 C T PLEKHG7 Missense_Mutation p.L36F 0.07 tolerated(0.98) benign(0.005) TCGA-E2-A1B5-01 13 46148977 46148977 G A FAM194B Silent p.N350N 0.10 TCGA-E2-A1B5-01 17 27581399 27581399 C G CRYBA1 3'UTR 0.13 TCGA-E2-A1B5-01 17 37455310 37455310 G A FBXL20 Nonsense_Mutation p.R88* 0.07 TCGA-E2-A1B5-01 17 56435317 56435317 G A RNF43 Missense_Mutation p.S607L 0.04 tolerated_low_confidence(0.09) benign(0.002) TCGA-E2-A1B5-01 17 59821812 59821812 G A BRIP1 Silent p.I746I 0.32 TCGA-E2-A1B5-01 17 59821901 59821901 G C BRIP1 Missense_Mutation p.L717V 0.32 deleterious(0) probably_damaging(1) TCGA-E2-A1B5-01 17 78269609 78269609 C A RNF213 Missense_Mutation p.Q670K 0.07 benign(0.038) TCGA-E2-A1B5-01 18 18540143 18540143 G A ROCK1 Missense_Mutation p.S1126L 0.07 deleterious(0) possibly_damaging(0.85) TCGA-E2-A1B5-01 18 77895774 77895774 C T ADNP2 Silent p.I826I 0.11 TCGA-E2-A1B5-01 19 1482992 1482992 G A PCSK4 Silent p.Y533Y 0.16 TCGA-E2-A1B5-01 19 43762296 43762296 G A PSG9 Intron 0.05 TCGA-E2-A1B5-01 19 48945466 48945466 G A GRIN2D Missense_Mutation p.E834K 0.13 deleterious(0.04) probably_damaging(0.996) TCGA-E2-A1B5-01 19 49469846 49469846 G A FTL Missense_Mutation p.D128N 0.11 deleterious(0.03) possibly_damaging(0.771) TCGA-E2-A1B5-01 19 50128449 50128449 C T PRR12 Missense_Mutation p.R1986W 0.11 unknown(0) TCGA-E2-A1B5-01 19 9069355 9069355 T C MUC16 Missense_Mutation p.I6031V 0.08 unknown(0) TCGA-E2-A1B5-01 1 147083511 147083511 G A BCL9 5'UTR 0.13 TCGA-E2-A1B5-01 1 148017583 148017583 T C NBPF14 Missense_Mutation p.M240V 0.04 deleterious(0.02) benign(0.426) TCGA-E2-A1B5-01 1 227174180 227174180 C T ADCK3 Silent p.A562A 0.08 TCGA-E2-A1B5-01 20 2542635 2542635 C T TMC2 Missense_Mutation p.A178V 0.15 tolerated(0.2) benign(0.004) TCGA-E2-A1B5-01 20 45354005 45354005 C T SLC2A10 Silent p.F110F 0.16 TCGA-E2-A1B5-01 21 46596556 46596556 G A ADARB1 Missense_Mutation p.G314S 0.11 tolerated(0.48) probably_damaging(0.994) TCGA-E2-A1B5-01 22 36680212 36680212 G A MYH9 Missense_Mutation p.R1898C 0.13 probably_damaging(0.982) TCGA-E2-A1B5-01 2 28004563 28004563 G A RBKS Silent p.F296F 0.05 TCGA-E2-A1B5-01 2 44571039 44571039 T C PREPL Missense_Mutation p.D154G 0.09 tolerated(0.6) benign(0.001) TCGA-E2-A1B5-01 2 69577298 69577298 T G GFPT1 Missense_Mutation p.S253R 0.07 tolerated(0.52) benign(0.042) TCGA-E2-A1B5-01 5 140181539 140181539 G A PCDHA3 Missense_Mutation p.E253K 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E2-A1B5-01 5 149510110 149510110 G T PDGFRB Missense_Mutation p.D453E 0.17 deleterious(0.01) benign(0.055) TCGA-E2-A1B5-01 6 133849883 133849883 G A EYA4 Silent p.R620R 0.07 TCGA-E2-A1B5-01 6 161071469 161071469 C T LPA Missense_Mutation p.R37Q 0.12 tolerated(0.09) benign(0.187) TCGA-E2-A1B5-01 7 102952139 102952139 A C PMPCB Missense_Mutation p.N402H 0.08 deleterious(0) probably_damaging(0.981) TCGA-E2-A1B5-01 7 106843886 106843886 C G COG5 3'UTR 0.10 TCGA-E2-A1B5-01 7 140494208 140494208 C A BRAF Missense_Mutation p.R347L 0.10 tolerated(0.18) benign(0.013) TCGA-E2-A1B5-01 7 7645673 7645673 A G MIOS Silent p.G834G 0.07 TCGA-E2-A1B5-01 7 92761453 92761453 G A SAMD9L Silent p.L1278L 0.09 TCGA-E2-A1B5-01 8 10465030 10465030 G A RP1L1 Missense_Mutation p.S2193L 0.07 unknown(0) TCGA-E2-A1B5-01 8 42323332 42323332 A G SLC20A2 Silent p.G131G 0.08 TCGA-E2-A1B5-01 8 73958225 73958225 G C TERF1 Missense_Mutation p.L391F 0.05 deleterious(0) probably_damaging(1) TCGA-E2-A1B5-01 8 85441546 85441546 G A RALYL Missense_Mutation p.G10E 0.04 tolerated_low_confidence(0.25) benign(0.037) TCGA-E2-A1B5-01 9 125674142 125674142 G C ZBTB6 Silent p.V70V 0.11 TCGA-E2-A1B5-01 9 35237754 35237754 G A UNC13B Missense_Mutation p.E109K 0.08 tolerated_low_confidence(0.08) benign(0.125) TCGA-E2-A1B5-01 X 70461151 70461151 G C ZMYM3 Missense_Mutation p.I1282M 0.05 tolerated(0.22) benign(0.009) TCGA-E2-A1B6-01 10 24832311 24832311 G C KIAA1217 Missense_Mutation p.S1371T 0.04 tolerated(0.17) possibly_damaging(0.487) TCGA-E2-A1B6-01 10 55581702 55581702 G A PCDH15 Silent p.I1930I 0.05 TCGA-E2-A1B6-01 11 126147598 126147598 G C FOXRED1 3'UTR 0.06 TCGA-E2-A1B6-01 11 17531973 17531973 A - USH1C Frame_Shift_Del p.A504Lfs*8 0.09 TCGA-E2-A1B6-01 11 62521486 62521486 C T ZBTB3 Missense_Mutation p.A17T 0.08 deleterious_low_confidence(0.04) benign(0.011) TCGA-E2-A1B6-01 11 68153967 68153967 C T LRP5 Missense_Mutation p.A400V 0.14 deleterious(0.04) possibly_damaging(0.627) TCGA-E2-A1B6-01 11 75299123 75299123 C T MAP6 Missense_Mutation p.G475S 0.04 tolerated_low_confidence(0.13) benign(0.021) TCGA-E2-A1B6-01 12 116401297 116401297 C G MED13L Missense_Mutation p.A2139P 0.07 tolerated(0.13) probably_damaging(0.977) TCGA-E2-A1B6-01 12 6690307 6690307 A G CHD4 Silent p.D1604D 0.13 TCGA-E2-A1B6-01 13 28124517 28124517 A T LNX2 Silent p.I630I 0.06 TCGA-E2-A1B6-01 13 77715007 77715007 G C MYCBP2 Missense_Mutation p.P2421A 0.07 benign(0.254) TCGA-E2-A1B6-01 13 99515663 99515663 C A DOCK9 Silent p.L1142L 0.05 TCGA-E2-A1B6-01 15 77907402 77907402 C T LINGO1 Missense_Mutation p.V283I 0.22 tolerated(0.16) benign(0.001) TCGA-E2-A1B6-01 16 29882826 29882826 G T SEZ6L2 3'UTR 0.20 TCGA-E2-A1B6-01 16 4949013 4949013 C A PPL Splice_Site p.X292_splice 0.06 TCGA-E2-A1B6-01 16 67916870 67916870 G C EDC4 Missense_Mutation p.E1213D 0.07 tolerated(0.69) benign(0.005) TCGA-E2-A1B6-01 16 69356526 69356526 C G VPS4A Missense_Mutation p.P379A 0.06 deleterious(0.03) benign(0.083) TCGA-E2-A1B6-01 16 74670459 74670459 G A RFWD3 Missense_Mutation p.T404M 0.05 tolerated(0.39) benign(0.004) TCGA-E2-A1B6-01 16 80646731 80646731 T A CDYL2 Missense_Mutation p.D337V 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-E2-A1B6-01 17 48275345 48275345 C G COL1A1 Missense_Mutation p.G203R 0.07 unknown(0) TCGA-E2-A1B6-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.11 TCGA-E2-A1B6-01 19 10254578 10254578 C G DNMT1 Missense_Mutation p.D994H 0.04 deleterious(0) probably_damaging(0.982) TCGA-E2-A1B6-01 19 10570300 10570300 C G PDE4A Missense_Mutation p.I410M 0.13 deleterious(0) probably_damaging(0.998) TCGA-E2-A1B6-01 19 38127028 38127028 A G ZFP30 Silent p.T138T 0.07 TCGA-E2-A1B6-01 1 154561934 154561934 A G ADAR Silent p.N891N 0.08 TCGA-E2-A1B6-01 1 216369941 216369941 A T USH2A Missense_Mutation p.L1402H 0.06 benign(0.013) TCGA-E2-A1B6-01 1 222721087 222721087 G A HHIPL2 Silent p.Y100Y 0.05 TCGA-E2-A1B6-01 1 237796915 237796915 G A RYR2 Missense_Mutation p.R2198H 0.11 probably_damaging(1) TCGA-E2-A1B6-01 1 29040961 29040961 C G GMEB1 Missense_Mutation p.H466Q 0.07 tolerated(0.09) benign(0.056) TCGA-E2-A1B6-01 1 33957011 33957011 C T ZSCAN20 Missense_Mutation p.R385W 0.06 deleterious(0) probably_damaging(1) TCGA-E2-A1B6-01 20 3268330 3268330 G A C20orf194 Missense_Mutation p.R812C 0.09 deleterious(0) probably_damaging(0.959) TCGA-E2-A1B6-01 21 39493332 39493332 C G DSCR4 Missense_Mutation p.L6F 0.05 possibly_damaging(0.765) TCGA-E2-A1B6-01 21 41137704 41137704 C - IGSF5 Frame_Shift_Del p.S116Vfs*37 0.08 TCGA-E2-A1B6-01 22 45279150 45279150 C T PHF21B Missense_Mutation p.R471H 0.15 deleterious(0.04) possibly_damaging(0.621) TCGA-E2-A1B6-01 2 179226415 179226415 C G OSBPL6 Missense_Mutation p.S412C 0.05 tolerated(0.09) probably_damaging(0.999) TCGA-E2-A1B6-01 2 202149683 202149683 C T CASP8 Missense_Mutation p.S375F 0.12 deleterious(0) probably_damaging(0.998) TCGA-E2-A1B6-01 3 108677943 108677943 G A MORC1 Nonsense_Mutation p.Q942* 0.07 TCGA-E2-A1B6-01 3 108677944 108677944 C A MORC1 Missense_Mutation p.E941D 0.07 tolerated(0.06) possibly_damaging(0.64) TCGA-E2-A1B6-01 3 113724560 113724560 G C KIAA1407 Missense_Mutation p.R555G 0.07 deleterious(0) possibly_damaging(0.573) TCGA-E2-A1B6-01 3 195453405 195453405 C T MUC20 Missense_Mutation p.T644M 0.09 deleterious(0) unknown(0) TCGA-E2-A1B6-01 3 66463334 66463334 G C LRIG1 Missense_Mutation p.T251R 0.05 tolerated(0.1) benign(0.028) TCGA-E2-A1B6-01 3 69097419 69097419 T C TMF1 Missense_Mutation p.E146G 0.07 tolerated_low_confidence(0.05) benign(0.007) TCGA-E2-A1B6-01 4 115997412 115997412 C T NDST4 Missense_Mutation p.G261R 0.06 deleterious(0) probably_damaging(0.999) TCGA-E2-A1B6-01 4 99339842 99339842 T C RAP1GDS1 Silent p.I359I 0.05 TCGA-E2-A1B6-01 5 127782224 127782224 C A FBN2 Missense_Mutation p.C301F 0.03 deleterious(0) benign(0.157) TCGA-E2-A1B6-01 5 156456824 156456824 C A HAVCR1 Missense_Mutation p.A339S 0.05 deleterious(0.01) benign(0.168) TCGA-E2-A1B6-01 5 41203348 41203348 A T C6 5'UTR 0.05 TCGA-E2-A1B6-01 6 165715615 165715615 G T C6orf118 Missense_Mutation p.P66T 0.12 tolerated(0.06) probably_damaging(0.96) TCGA-E2-A1B6-01 6 38702268 38702268 C G DNAH8 5'UTR 0.04 TCGA-E2-A1B6-01 6 56472980 56472980 T C DST Intron 0.06 TCGA-E2-A1B6-01 6 56480818 56480818 G T DST Intron 0.11 TCGA-E2-A1B6-01 7 142206954 142206954 T A TRBV10-2 Missense_Mutation p.T3S 0.06 tolerated(0.67) benign(0.003) TCGA-E2-A1B6-01 7 43283484 43283484 G A HECW1 5'UTR 0.07 TCGA-E2-A1B6-01 8 145532615 145532615 C G HSF1 Missense_Mutation p.F47L 0.10 tolerated(0.14) benign(0.009) TCGA-E2-A1B6-01 8 61653959 61653959 C T CHD7 5'UTR 0.09 TCGA-E2-A1B6-01 8 66635752 66635752 C A PDE7A Intron 0.04 TCGA-E2-A1B6-01 9 116811102 116811102 G T ZNF618 Missense_Mutation p.G414V 0.12 deleterious(0) probably_damaging(1) TCGA-E2-A1B6-01 9 127911800 127911800 A G PPP6C 3'UTR 0.25 TCGA-E2-A1BC-01 10 38652504 38652504 T C HSD17B7P2 RNA 0.26 TCGA-E2-A1BC-01 10 43015456 43015456 G T ZNF37BP RNA 0.29 TCGA-E2-A1BC-01 11 65632201 65632201 G T MUS81 Missense_Mutation p.G396V 0.30 deleterious(0) probably_damaging(0.993) TCGA-E2-A1BC-01 11 66475053 66475053 G C SPTBN2 Silent p.L529L 0.29 TCGA-E2-A1BC-01 12 11506225 11506225 G A PRB1 Missense_Mutation p.S138F 0.28 deleterious_low_confidence(0) unknown(0) TCGA-E2-A1BC-01 12 131616342 131616342 G A GPR133 Missense_Mutation p.G750R 0.20 tolerated(0.05) possibly_damaging(0.833) TCGA-E2-A1BC-01 12 27133509 27133509 G C TM7SF3 Missense_Mutation p.I342M 0.24 deleterious(0.02) benign(0.111) TCGA-E2-A1BC-01 13 110827024 110827024 C T COL4A1 Missense_Mutation p.G1091R 0.05 probably_damaging(1) TCGA-E2-A1BC-01 13 37446983 37446983 C T SMAD9 Missense_Mutation p.R161H 0.25 tolerated(0.13) benign(0.006) TCGA-E2-A1BC-01 14 22554978 22554978 G T TRAV23DV6 Missense_Mutation p.S35I 0.26 tolerated(0.32) benign(0.248) TCGA-E2-A1BC-01 14 91252558 91252558 C T TTC7B Missense_Mutation p.R79H 0.31 deleterious(0) possibly_damaging(0.575) TCGA-E2-A1BC-01 15 101447414 101447414 C T ALDH1A3 Missense_Mutation p.A441V 0.24 deleterious(0) possibly_damaging(0.827) TCGA-E2-A1BC-01 15 32929655 32929655 C A ARHGAP11A Nonsense_Mutation p.S894* 0.29 TCGA-E2-A1BC-01 16 7102099 7102099 G T RBFOX1 Missense_Mutation p.R9S 0.20 deleterious_low_confidence(0) benign(0.018) TCGA-E2-A1BC-01 17 11984671 11984672 AG - MAP2K4 Splice_Site p.X75_splice 0.34 TCGA-E2-A1BC-01 17 29588873 29588876 TAGG - NF1 Splice_Site p.X1575_splice 0.28 TCGA-E2-A1BC-01 17 43009058 43009058 G A KIF18B Silent p.L477L 0.29 TCGA-E2-A1BC-01 17 72916760 72916760 G C USH1G Missense_Mutation p.D57E 0.19 deleterious(0.05) possibly_damaging(0.833) TCGA-E2-A1BC-01 19 53667670 53667670 C T ZNF665 3'UTR 0.27 TCGA-E2-A1BC-01 1 170952657 170952657 C T MROH9 Silent p.D237D 0.13 TCGA-E2-A1BC-01 1 229461134 229461134 T G CCSAP Missense_Mutation p.K221Q 0.09 deleterious(0) possibly_damaging(0.793) TCGA-E2-A1BC-01 1 53692670 53692670 A C MAGOH 3'UTR 0.29 TCGA-E2-A1BC-01 1 85790543 85790543 G T DDAH1 Missense_Mutation p.H207Q 0.32 deleterious(0.03) benign(0.012) TCGA-E2-A1BC-01 21 39087022 39087022 T C KCNJ6 Silent p.S146S 0.26 TCGA-E2-A1BC-01 22 25747690 25747690 A T LRP5L 3'UTR 0.08 TCGA-E2-A1BC-01 2 26204648 26204648 G A KIF3C Missense_Mutation p.P47S 0.19 benign(0.314) TCGA-E2-A1BC-01 2 89976393 89976393 C - IGKV2D-30 Frame_Shift_Del p.S88Rfs*11 0.25 TCGA-E2-A1BC-01 2 96574437 96574437 C G ANKRD36C Missense_Mutation p.E71Q 0.04 tolerated(1) benign(0) TCGA-E2-A1BC-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A1BC-01 3 49698237 49698237 A T BSN Nonsense_Mutation p.K2987* 0.18 TCGA-E2-A1BC-01 3 49742580 49742580 G C RNF123 Missense_Mutation p.R708P 0.23 tolerated(0.09) possibly_damaging(0.693) TCGA-E2-A1BC-01 4 134084410 134084410 C T PCDH10 Nonsense_Mutation p.R1026* 0.24 TCGA-E2-A1BC-01 4 46053637 46053637 G C GABRG1 Missense_Mutation p.T312S 0.19 deleterious(0) probably_damaging(0.992) TCGA-E2-A1BC-01 4 56329927 56329927 C A CLOCK Nonsense_Mutation p.E162* 0.05 TCGA-E2-A1BC-01 4 8228801 8228801 C G SH3TC1 Silent p.P460P 0.40 TCGA-E2-A1BC-01 4 89744132 89744132 C A FAM13A Intron 0.24 TCGA-E2-A1BC-01 5 41382118 41382118 G A PLCXD3 Missense_Mutation p.P208S 0.32 tolerated(0.1) benign(0.175) TCGA-E2-A1BC-01 5 41382133 41382133 C A PLCXD3 Missense_Mutation p.V203L 0.33 tolerated(0.4) benign(0.029) TCGA-E2-A1BC-01 5 447698 447698 C T EXOC3 Silent p.L65L 0.38 TCGA-E2-A1BC-01 6 131937129 131937129 G - MED23 Frame_Shift_Del p.P265Hfs*6 0.33 TCGA-E2-A1BC-01 8 27845103 27845103 G A SCARA5 Silent p.T10T 0.19 TCGA-E2-A1BC-01 9 125288841 125288841 G A OR1N1 Silent p.C244C 0.11 TCGA-E2-A1BC-01 X 19971988 19971988 G T CXorf23 Silent p.G491G 0.27 TCGA-E2-A1BC-01 X 39922954 39922954 T C BCOR Missense_Mutation p.I1252V 0.27 tolerated(0.77) benign(0.007) TCGA-E2-A1BC-01 X 73812045 73812045 G A RLIM Missense_Mutation p.R369C 0.12 tolerated(0.06) unknown(0) TCGA-E2-A1BD-01 11 18369125 18369125 T - GTF2H1 Intron 0.16 TCGA-E2-A1BD-01 11 56237919 56237919 G A OR5M3 Nonsense_Mutation p.R19* 0.15 TCGA-E2-A1BD-01 12 109948241 109948241 C G UBE3B Missense_Mutation p.P612A 0.48 deleterious(0.01) benign(0.441) TCGA-E2-A1BD-01 12 130935809 130935809 C T RIMBP2 Silent p.P128P 0.33 TCGA-E2-A1BD-01 12 18234200 18234200 C G RERGL Missense_Mutation p.K181N 0.18 tolerated(0.09) benign(0.25) TCGA-E2-A1BD-01 12 32134080 32134080 T C KIAA1551 Missense_Mutation p.L64P 0.07 tolerated(0.18) benign(0.033) TCGA-E2-A1BD-01 12 5021915 5021915 C T KCNA1 Silent p.I457I 0.15 TCGA-E2-A1BD-01 12 56601499 56601499 C T RNF41 Missense_Mutation p.R178H 0.41 tolerated(0.08) benign(0.015) TCGA-E2-A1BD-01 14 22090639 22090639 G T TRAV1-1 Missense_Mutation p.S82I 0.34 tolerated(0.06) benign(0.022) TCGA-E2-A1BD-01 14 67799824 67799824 G C MPP5 3'UTR 0.41 TCGA-E2-A1BD-01 15 68613777 68613777 C T ITGA11 Missense_Mutation p.R796Q 0.21 tolerated(0.34) benign(0.009) TCGA-E2-A1BD-01 16 20327362 20327362 A T GP2 Missense_Mutation p.S476T 0.52 tolerated(0.77) benign(0.023) TCGA-E2-A1BD-01 17 39316513 39316513 G A KRTAP4-4 Missense_Mutation p.T144I 0.10 unknown(0) TCGA-E2-A1BD-01 17 41276108 41276108 A T BRCA1 Missense_Mutation p.D2E 0.12 deleterious(0) probably_damaging(0.979) TCGA-E2-A1BD-01 17 650835 650835 C T GEMIN4 Missense_Mutation p.V150I 0.18 tolerated(0.21) benign(0.002) TCGA-E2-A1BD-01 19 13414649 13414649 G T CACNA1A Missense_Mutation p.S679Y 0.45 probably_damaging(0.977) TCGA-E2-A1BD-01 1 182554944 182554944 G T RNASEL Missense_Mutation p.A333D 0.14 tolerated(0.36) benign(0.015) TCGA-E2-A1BD-01 1 236918328 236918328 C T ACTN2 Missense_Mutation p.R662W 0.25 deleterious(0) probably_damaging(0.974) TCGA-E2-A1BD-01 1 8385359 8385359 A G SLC45A1 Silent p.G133G 0.21 TCGA-E2-A1BD-01 20 1285901 1285901 G T SNPH Missense_Mutation p.G230C 0.43 deleterious(0.03) possibly_damaging(0.779) TCGA-E2-A1BD-01 20 43927055 43927055 C T MATN4 Missense_Mutation p.R394H 0.29 probably_damaging(1) TCGA-E2-A1BD-01 20 45021747 45021747 T - ELMO2 Frame_Shift_Del p.Q76Hfs*13 0.28 TCGA-E2-A1BD-01 20 8721040 8721040 G T PLCB1 Silent p.L786L 0.47 TCGA-E2-A1BD-01 21 45220491 45220491 C T RRP1 Missense_Mutation p.R329W 0.24 deleterious(0) probably_damaging(0.995) TCGA-E2-A1BD-01 22 17071880 17071880 C T CCT8L2 Missense_Mutation p.V521I 0.31 tolerated(1) benign(0.017) TCGA-E2-A1BD-01 2 29455275 29455275 C T ALK Missense_Mutation p.G843R 0.69 deleterious(0) probably_damaging(1) TCGA-E2-A1BD-01 2 84846872 84846872 C T DNAH6 Silent p.A1212A 0.54 TCGA-E2-A1BD-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.59 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A1BD-01 4 906526 906526 G T GAK Missense_Mutation p.F88L 0.28 tolerated(0.12) benign(0.015) TCGA-E2-A1BD-01 5 56177011 56177014 ATAG - MAP3K1 Frame_Shift_Del p.R763Cfs*35 0.48 TCGA-E2-A1BD-01 5 56179424 56179425 - T MAP3K1 Frame_Shift_Ins p.Q1247Sfs*26 0.32 TCGA-E2-A1BD-01 5 71479590 71479590 C T MAP1B Nonsense_Mutation p.R103* 0.19 TCGA-E2-A1BD-01 7 23213726 23213726 G T KLHL7 Missense_Mutation p.A524S 0.13 deleterious(0.01) possibly_damaging(0.899) TCGA-E2-A1BD-01 7 23213727 23213727 C T KLHL7 Missense_Mutation p.A524V 0.13 tolerated(0.16) benign(0.255) TCGA-E2-A1BD-01 7 31377921 31377921 C T NEUROD6 Missense_Mutation p.R321H 0.40 tolerated(1) possibly_damaging(0.84) TCGA-E2-A1BD-01 7 79818279 79818279 C T GNAI1 Missense_Mutation p.S44F 0.50 deleterious(0) probably_damaging(1) TCGA-E2-A1BD-01 7 99950365 99950365 A G PILRB Intron 0.17 TCGA-E2-A1BD-01 8 146076483 146076483 G A COMMD5 Nonsense_Mutation p.Q81* 0.33 TCGA-E2-A1BD-01 8 146107918 146107918 G T ZNF250 Missense_Mutation p.T222N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A1BD-01 8 17838141 17838141 A C PCM1 Missense_Mutation p.K1329Q 0.14 tolerated(0.46) benign(0.086) TCGA-E2-A1BD-01 8 22078843 22078844 - C PHYHIP 3'UTR 0.33 TCGA-E2-A1BD-01 8 36721930 36721930 G A KCNU1 Missense_Mutation p.V634I 0.10 tolerated(0.64) benign(0.001) TCGA-E2-A1BD-01 9 130648927 130648927 G A ST6GALNAC6 Missense_Mutation p.S318L 0.10 benign(0.237) TCGA-E2-A1BD-01 X 122599568 122599568 C T GRIA3 Missense_Mutation p.L790F 0.40 tolerated(0.08) benign(0.062) TCGA-E2-A1BD-01 X 154007395 154007395 G A MPP1 3'UTR 0.38 TCGA-E2-A1BD-01 X 18924858 18924858 G A PHKA2 Missense_Mutation p.T891M 0.05 deleterious(0) probably_damaging(0.982) TCGA-E2-A1BD-01 X 37893157 37893157 A T SYTL5 Silent p.S5S 0.40 TCGA-E2-A1BD-01 X 76709703 76709703 C A FGF16 Missense_Mutation p.D19E 0.43 benign(0.003) TCGA-E2-A1IE-01 10 95418688 95418688 T A PDE6C Missense_Mutation p.D689E 0.09 tolerated(0.25) benign(0.074) TCGA-E2-A1IE-01 11 108214019 108214019 T G ATM Missense_Mutation p.L2780R 0.54 deleterious(0) probably_damaging(1) TCGA-E2-A1IE-01 11 33731840 33731840 G A CD59 Silent p.N73N 0.37 TCGA-E2-A1IE-01 11 65108454 65108454 C T DPF2 Silent p.L71L 0.08 TCGA-E2-A1IE-01 12 56031321 56031321 G T OR10P1 Missense_Mutation p.V216F 0.25 deleterious(0.02) possibly_damaging(0.776) TCGA-E2-A1IE-01 12 95479412 95479412 A G FGD6 Intron 0.30 TCGA-E2-A1IE-01 15 24922753 24922753 C T NPAP1 Missense_Mutation p.T580I 0.34 deleterious(0) probably_damaging(0.998) TCGA-E2-A1IE-01 16 54317446 54317449 TTTC - IRX3 3'UTR 0.67 TCGA-E2-A1IE-01 16 613283 613283 T C C16orf11 5'UTR 0.29 TCGA-E2-A1IE-01 16 87866473 87866473 G T SLC7A5 3'UTR 0.61 TCGA-E2-A1IE-01 17 65978598 65978598 C G BPTF 3'UTR 0.58 TCGA-E2-A1IE-01 19 52091101 52091101 G A ZNF175 Missense_Mutation p.S506N 0.31 tolerated(0.18) benign(0.011) TCGA-E2-A1IE-01 19 9058547 9058547 C A MUC16 Missense_Mutation p.Q9633H 0.33 unknown(0) TCGA-E2-A1IE-01 1 112998889 112998889 C T CTTNBP2NL Missense_Mutation p.R259W 0.35 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IE-01 1 32694376 32694376 C T EIF3I Missense_Mutation p.R230C 0.30 tolerated(0.19) benign(0.143) TCGA-E2-A1IE-01 20 43052731 43052731 C T HNF4A Silent p.Y322Y 0.38 TCGA-E2-A1IE-01 2 179444052 179444052 G A TTN Missense_Mutation p.R22569W 0.30 TCGA-E2-A1IE-01 2 179479294 179479294 A G TTN Missense_Mutation p.V16316A 0.35 TCGA-E2-A1IE-01 2 182402851 182402851 G A CERKL 3'Flank 0.30 TCGA-E2-A1IE-01 3 195513222 195513222 G A MUC4 Silent p.S1743S 0.39 TCGA-E2-A1IE-01 3 98538119 98538119 C T DCBLD2 Silent p.P338P 0.37 TCGA-E2-A1IE-01 6 109766645 109766645 C T MICAL1 Missense_Mutation p.E921K 0.58 deleterious(0) benign(0.201) TCGA-E2-A1IE-01 6 26032045 26032045 C T HIST1H3B Missense_Mutation p.D82N 0.14 deleterious_low_confidence(0.01) benign(0.051) TCGA-E2-A1IE-01 6 41903724 41903724 G C CCND3 Missense_Mutation p.P278R 0.35 tolerated(0.44) benign(0.067) TCGA-E2-A1IE-01 7 5545048 5545048 A C FBXL18 Missense_Mutation p.Y78D 0.57 deleterious(0) probably_damaging(0.982) TCGA-E2-A1IE-01 8 25189823 25189823 C A DOCK5 Missense_Mutation p.L654I 0.58 deleterious(0) possibly_damaging(0.905) TCGA-E2-A1IE-01 9 135946424 135946424 C A CEL Missense_Mutation p.T515N 0.09 tolerated(0.16) possibly_damaging(0.862) TCGA-E2-A1IE-01 9 135962223 135962223 C A CELP RNA 0.24 TCGA-E2-A1IE-01 9 78799604 78799604 G A PCSK5 Missense_Mutation p.R738Q 0.38 deleterious(0.02) benign(0.158) TCGA-E2-A1IE-01 9 90535249 90535249 C A SPATA31C1 RNA 0.38 TCGA-E2-A1IE-01 X 117960036 117960036 G A ZCCHC12 Missense_Mutation p.V277M 0.43 deleterious(0) probably_damaging(0.998) TCGA-E2-A1IF-01 10 105990439 105990439 G - WDR96 Frame_Shift_Del p.C77Vfs*11 0.27 TCGA-E2-A1IF-01 10 94225439 94225439 G C IDE Missense_Mutation p.Q828E 0.07 deleterious(0) probably_damaging(0.942) TCGA-E2-A1IF-01 11 30033418 30033418 G A KCNA4 Missense_Mutation p.R270W 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-E2-A1IF-01 12 104100710 104100710 C T STAB2 Silent p.S1379S 0.17 TCGA-E2-A1IF-01 12 115120669 115120669 A G TBX3 Missense_Mutation p.W113R 0.33 deleterious(0) probably_damaging(1) TCGA-E2-A1IF-01 12 120763747 120763747 C A PLA2G1B Silent p.G37G 0.20 TCGA-E2-A1IF-01 12 120966842 120966842 C A COQ5 Missense_Mutation p.G35W 0.15 tolerated(0.12) benign(0.018) TCGA-E2-A1IF-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.17 deleterious(0) benign(0.361) TCGA-E2-A1IF-01 13 49281768 49281768 C T CYSLTR2 Missense_Mutation p.T272M 0.18 tolerated(0.11) benign(0) TCGA-E2-A1IF-01 16 1507755 1507755 C T CLCN7 Silent p.T226T 0.14 TCGA-E2-A1IF-01 16 30545573 30545573 C T AC002310.13 Nonsense_Mutation p.W85* 0.53 TCGA-E2-A1IF-01 16 4650214 4650214 C T C16orf96 Silent p.L1108L 0.14 TCGA-E2-A1IF-01 1 148251778 148251778 T C NBPF20 3'UTR 0.33 TCGA-E2-A1IF-01 1 202411672 202411672 T C PPP1R12B Missense_Mutation p.S547P 0.12 tolerated(0.1) possibly_damaging(0.719) TCGA-E2-A1IF-01 1 247016578 247016578 C T AHCTF1 Missense_Mutation p.G1469S 0.30 tolerated(1) benign(0.002) TCGA-E2-A1IF-01 20 17956328 17956328 C A MGME1 Missense_Mutation p.N171K 0.06 tolerated(0.15) benign(0.038) TCGA-E2-A1IF-01 2 157186269 157186269 C - NR4A2 Frame_Shift_Del p.D144Tfs*19 0.17 TCGA-E2-A1IF-01 2 189873899 189873899 G A COL3A1 Missense_Mutation p.A1259T 0.21 unknown(0) TCGA-E2-A1IF-01 2 216809539 216809539 G T MREG 3'UTR 0.12 TCGA-E2-A1IF-01 2 91805706 91805706 G T AC116050.1 Intron 0.20 TCGA-E2-A1IF-01 3 125769871 125769871 A G SLC41A3 Missense_Mutation p.V99A 0.26 deleterious(0) possibly_damaging(0.55) TCGA-E2-A1IF-01 3 132257060 132257060 A G DNAJC13 Silent p.T2222T 0.12 TCGA-E2-A1IF-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.19 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A1IF-01 6 53519409 53519409 A C KLHL31 Missense_Mutation p.I221R 0.15 tolerated(0.48) benign(0.004) TCGA-E2-A1IF-01 9 72073092 72073092 A C APBA1 Missense_Mutation p.L499V 0.19 tolerated(0.31) benign(0.025) TCGA-E2-A1IF-01 9 96238607 96238607 T C FAM120A Missense_Mutation p.L264P 0.26 deleterious(0) probably_damaging(0.974) TCGA-E2-A1IG-01 10 124097568 124097569 - T BTBD16 Frame_Shift_Ins p.S498Kfs*33 0.40 TCGA-E2-A1IG-01 10 131640515 131640515 A T EBF3 Missense_Mutation p.Y404N 0.30 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-E2-A1IG-01 10 329357 329357 G A DIP2C Silent p.S1383S 0.14 TCGA-E2-A1IG-01 10 68686978 68686978 G A LRRTM3 Missense_Mutation p.E102K 0.26 tolerated(0.39) benign(0.183) TCGA-E2-A1IG-01 10 70182350 70182350 A C DNA2 Missense_Mutation p.M891R 0.36 deleterious(0) probably_damaging(0.936) TCGA-E2-A1IG-01 11 122930239 122930241 GAA - HSPA8 In_Frame_Del p.F354del 0.68 TCGA-E2-A1IG-01 11 55926948 55926948 G A OR8K5 Silent p.I282I 0.57 TCGA-E2-A1IG-01 11 55926993 55926993 G A OR8K5 Silent p.F267F 0.63 TCGA-E2-A1IG-01 11 55927003 55927003 G A OR8K5 Missense_Mutation p.S264F 0.61 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-E2-A1IG-01 11 55927382 55927382 G A OR8K5 Nonsense_Mutation p.Q138* 0.43 TCGA-E2-A1IG-01 11 55927384 55927384 G A OR8K5 Missense_Mutation p.S137F 0.42 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-E2-A1IG-01 11 55927406 55927406 G A OR8K5 Silent p.L130L 0.59 TCGA-E2-A1IG-01 11 67938583 67938583 C T SUV420H1 Silent p.K292K 0.09 TCGA-E2-A1IG-01 12 4881731 4881731 G C GALNT8 Missense_Mutation p.V628L 0.52 tolerated(0.49) benign(0.005) TCGA-E2-A1IG-01 14 65220359 65220359 G A SPTB Silent p.P2166P 0.35 TCGA-E2-A1IG-01 15 20739675 20739675 C T GOLGA6L6 Missense_Mutation p.R692Q 0.13 unknown(0) TCGA-E2-A1IG-01 15 66797133 66797133 G A RPL4 5'UTR 0.54 TCGA-E2-A1IG-01 16 8997212 8997212 G A USP7 Silent p.Y584Y 0.32 TCGA-E2-A1IG-01 17 11572851 11572851 C T DNAH9 Silent p.Y1031Y 0.64 TCGA-E2-A1IG-01 17 12032459 12032459 G T MAP2K4 Nonsense_Mutation p.E299* 0.53 TCGA-E2-A1IG-01 17 26116644 26116644 C T NOS2 Missense_Mutation p.V61M 0.44 tolerated(0.21) benign(0.007) TCGA-E2-A1IG-01 17 43924233 43924233 C T SPPL2C Missense_Mutation p.A654V 0.33 deleterious_low_confidence(0.01) benign(0.212) TCGA-E2-A1IG-01 17 67212357 67212357 C A ABCA10 Splice_Site p.X224_splice 0.17 TCGA-E2-A1IG-01 17 80046886 80046891 GCTCAG - FASN In_Frame_Del p.P753_E754del 0.45 TCGA-E2-A1IG-01 18 19031101 19031101 C T GREB1L Missense_Mutation p.T613I 0.26 deleterious(0.02) possibly_damaging(0.59) TCGA-E2-A1IG-01 18 46808427 46808427 C T DYM Silent p.L355L 0.38 TCGA-E2-A1IG-01 19 39819046 39819046 G A GMFG 3'UTR 0.46 TCGA-E2-A1IG-01 19 45024705 45024705 G A CEACAM20 RNA 0.23 TCGA-E2-A1IG-01 1 153615980 153615980 T A CHTOP Intron 0.40 TCGA-E2-A1IG-01 1 155262965 155262965 C A PKLR Intron 0.21 TCGA-E2-A1IG-01 1 228480325 228480325 T C OBSCN Missense_Mutation p.W3998R 0.17 probably_damaging(1) TCGA-E2-A1IG-01 1 2304001 2304001 G C MORN1 Missense_Mutation p.P222A 0.30 deleterious(0.02) probably_damaging(0.96) TCGA-E2-A1IG-01 1 26688661 26688661 C T ZNF683 Intron 0.35 TCGA-E2-A1IG-01 1 27106363 27106363 T C ARID1A Missense_Mutation p.S1992P 0.51 probably_damaging(0.998) TCGA-E2-A1IG-01 1 6537605 6537605 G A PLEKHG5 Silent p.F88F 0.39 TCGA-E2-A1IG-01 1 67424667 67424668 - T MIER1 Splice_Site p.X212_splice 0.33 TCGA-E2-A1IG-01 1 87810502 87810502 C T LMO4 3'UTR 0.28 TCGA-E2-A1IG-01 1 89434456 89434456 T C CCBL2 Missense_Mutation p.N67S 0.31 deleterious(0) probably_damaging(0.997) TCGA-E2-A1IG-01 2 163693155 163693155 C T KCNH7 Missense_Mutation p.D67N 0.46 deleterious(0.05) possibly_damaging(0.511) TCGA-E2-A1IG-01 2 197707454 197707454 A G PGAP1 Missense_Mutation p.I874T 0.51 deleterious(0.01) benign(0.06) TCGA-E2-A1IG-01 2 230910775 230910775 G A SLC16A14 Missense_Mutation p.T356M 0.38 deleterious(0.04) probably_damaging(1) TCGA-E2-A1IG-01 2 55144045 55144045 C T EML6 Silent p.F1216F 0.30 TCGA-E2-A1IG-01 3 124457125 124457125 C A UMPS Intron 0.47 TCGA-E2-A1IG-01 3 184091243 184091243 C - THPO Frame_Shift_Del p.R119Lfs*32 0.44 TCGA-E2-A1IG-01 3 4730264 4730264 C A ITPR1 Missense_Mutation p.A1248D 0.43 deleterious(0.03) possibly_damaging(0.688) TCGA-E2-A1IG-01 4 89363548 89363548 A G HERC6 Missense_Mutation p.E1002G 0.41 deleterious(0) probably_damaging(0.92) TCGA-E2-A1IG-01 5 140960365 140960365 A C DIAPH1 Missense_Mutation p.I257S 0.44 unknown(0) TCGA-E2-A1IG-01 5 64824380 64824380 T A CENPK Missense_Mutation p.M166L 0.32 tolerated(0.31) benign(0.003) TCGA-E2-A1IG-01 6 116381284 116381284 C G FRK Missense_Mutation p.R64P 0.43 deleterious(0.02) possibly_damaging(0.699) TCGA-E2-A1IG-01 6 12131013 12131013 G A HIVEP1 Missense_Mutation p.E2075K 0.20 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IG-01 6 12131016 12131016 G A HIVEP1 Missense_Mutation p.E2076K 0.21 deleterious(0) possibly_damaging(0.65) TCGA-E2-A1IG-01 6 12131113 12131113 G A HIVEP1 Missense_Mutation p.R2108Q 0.21 deleterious(0) probably_damaging(1) TCGA-E2-A1IG-01 6 152861113 152861113 G A SYNE1 Silent p.I37I 0.37 TCGA-E2-A1IG-01 6 46975029 46975029 T C GPR110 Silent p.G831G 0.31 TCGA-E2-A1IG-01 6 47646834 47646834 C G GPR111 Missense_Mutation p.D145E 0.35 tolerated(0.7) benign(0.022) TCGA-E2-A1IG-01 6 90660252 90660252 A T BACH2 Missense_Mutation p.S525T 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-E2-A1IG-01 7 151945159 151945159 G C KMT2C Missense_Mutation p.P787R 0.06 benign(0.001) TCGA-E2-A1IG-01 7 4249712 4249712 C T SDK1 Silent p.N1819N 0.43 TCGA-E2-A1IG-01 8 42798513 42798513 C A HOOK3 Missense_Mutation p.H109N 0.20 tolerated(0.32) possibly_damaging(0.589) TCGA-E2-A1IG-01 8 68965476 68965476 G A PREX2 Missense_Mutation p.R363Q 0.19 tolerated(0.05) probably_damaging(0.984) TCGA-E2-A1IG-01 9 104433299 104433299 G A GRIN3A Silent p.I465I 0.29 TCGA-E2-A1IG-01 X 107834827 107834828 - A COL4A5 Frame_Shift_Ins p.G460Rfs*5 0.41 TCGA-E2-A1IG-01 X 47424682 47424682 G A ARAF Missense_Mutation p.G164S 0.09 tolerated(0.67) benign(0.129) TCGA-E2-A1IH-01 10 131636135 131636135 G A EBF3 3'UTR 0.23 TCGA-E2-A1IH-01 10 27437888 27437888 A G YME1L1 Missense_Mutation p.S39P 0.29 tolerated_low_confidence(0.16) benign(0.001) TCGA-E2-A1IH-01 10 64968401 64968401 C T JMJD1C Missense_Mutation p.E1010K 0.24 tolerated(0.09) possibly_damaging(0.849) TCGA-E2-A1IH-01 10 73326553 73326553 G A CDH23 Missense_Mutation p.G162R 0.19 deleterious(0) probably_damaging(1) TCGA-E2-A1IH-01 10 89690810 89690813 GAAA - PTEN Frame_Shift_Del p.E73Dfs*25 0.63 TCGA-E2-A1IH-01 10 90433449 90433449 C G LIPF Silent p.A268A 0.39 TCGA-E2-A1IH-01 10 90433458 90433458 A G LIPF Missense_Mutation p.I271M 0.39 tolerated(0.28) benign(0.031) TCGA-E2-A1IH-01 10 90697946 90697946 C A ACTA2 Missense_Mutation p.D288Y 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-E2-A1IH-01 11 14541825 14541825 G A PSMA1 Intron 0.11 TCGA-E2-A1IH-01 11 33886168 33886168 G A LMO2 Silent p.L148L 0.15 TCGA-E2-A1IH-01 11 63997348 63997348 G A NUDT22 Silent p.E266E 0.14 TCGA-E2-A1IH-01 11 65746121 65746121 G T SART1 Missense_Mutation p.M741I 0.12 tolerated(0.09) probably_damaging(0.966) TCGA-E2-A1IH-01 11 67200221 67200221 G A RPS6KB2 Missense_Mutation p.E177K 0.18 deleterious(0) probably_damaging(1) TCGA-E2-A1IH-01 11 70171069 70171069 G C PPFIA1 Silent p.L161L 0.25 TCGA-E2-A1IH-01 11 73872571 73872571 G T C2CD3 Missense_Mutation p.T119N 0.38 deleterious(0) probably_damaging(0.944) TCGA-E2-A1IH-01 12 118610295 118610295 C T TAOK3 Silent p.K622K 0.17 TCGA-E2-A1IH-01 12 1675795 1675795 C G FBXL14 3'UTR 0.27 TCGA-E2-A1IH-01 12 4855388 4855388 C T GALNT8 Silent p.L379L 0.30 TCGA-E2-A1IH-01 12 49999104 49999104 C T FAM186B Intron 0.32 TCGA-E2-A1IH-01 12 53074048 53074048 G A KRT1 Missense_Mutation p.R29C 0.16 deleterious_low_confidence(0) unknown(0) TCGA-E2-A1IH-01 12 88379678 88379678 A G C12orf50 Missense_Mutation p.S359P 0.08 tolerated(0.12) benign(0.014) TCGA-E2-A1IH-01 13 114531617 114531617 G A GAS6 Missense_Mutation p.A404V 0.35 tolerated(0.99) possibly_damaging(0.648) TCGA-E2-A1IH-01 13 48954373 48954373 T C RB1 Silent p.Y498Y 0.28 TCGA-E2-A1IH-01 14 24619840 24619840 C G RNF31 Missense_Mutation p.Q411E 0.31 tolerated(1) benign(0) TCGA-E2-A1IH-01 14 67790494 67790494 C G MPP5 Missense_Mutation p.R606G 0.31 deleterious(0) possibly_damaging(0.883) TCGA-E2-A1IH-01 15 33954810 33954810 G A RYR3 Silent p.T1693T 0.34 TCGA-E2-A1IH-01 15 51742471 51742471 C T DMXL2 Missense_Mutation p.G2920D 0.31 deleterious(0) probably_damaging(1) TCGA-E2-A1IH-01 15 64218145 64218145 C G DAPK2 Missense_Mutation p.E269D 0.08 tolerated(1) benign(0) TCGA-E2-A1IH-01 15 80886107 80886107 G C ARNT2 3'UTR 0.36 TCGA-E2-A1IH-01 16 28913342 28913342 C G ATP2A1 Missense_Mutation p.I753M 0.27 deleterious(0) probably_damaging(0.998) TCGA-E2-A1IH-01 16 68215432 68215432 G A NFATC3 Missense_Mutation p.G657E 0.17 tolerated(0.9) benign(0.005) TCGA-E2-A1IH-01 16 68855977 68856002 AGAACCTCGAACTATATTCTTCTGTG - CDH1 Frame_Shift_Del p.P597Efs*11 0.41 TCGA-E2-A1IH-01 16 68856011 68856011 C T CDH1 Missense_Mutation p.P607S 0.29 tolerated(0.08) possibly_damaging(0.801) TCGA-E2-A1IH-01 17 40129457 40129457 C G CNP 3'UTR 0.26 TCGA-E2-A1IH-01 17 49067939 49067939 T C SPAG9 Missense_Mutation p.N830S 0.22 tolerated(0.77) benign(0.002) TCGA-E2-A1IH-01 17 66928618 66928618 G A ABCA8 Missense_Mutation p.S203L 0.24 deleterious(0) probably_damaging(0.938) TCGA-E2-A1IH-01 18 70417314 70417314 G T NETO1 Missense_Mutation p.H508Q 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.795) TCGA-E2-A1IH-01 19 13368334 13368334 C T CACNA1A Missense_Mutation p.E1474K 0.17 possibly_damaging(0.801) TCGA-E2-A1IH-01 19 38382389 38382389 G C WDR87 Missense_Mutation p.S1027C 0.34 possibly_damaging(0.555) TCGA-E2-A1IH-01 19 39660228 39660228 C T PAK4 Missense_Mutation p.S12F 0.30 deleterious(0) probably_damaging(0.998) TCGA-E2-A1IH-01 19 46914499 46914499 G A CCDC8 Silent p.A523A 0.28 TCGA-E2-A1IH-01 19 52705251 52705251 G C PPP2R1A Missense_Mutation p.E45Q 0.19 tolerated(0.09) benign(0.093) TCGA-E2-A1IH-01 19 53014257 53014257 A T ZNF578 Missense_Mutation p.Y208F 0.23 tolerated(0.05) possibly_damaging(0.793) TCGA-E2-A1IH-01 19 7685205 7685205 A G XAB2 Missense_Mutation p.M741T 0.10 tolerated(0.2) benign(0.024) TCGA-E2-A1IH-01 1 113471850 113471850 G C SLC16A1 Missense_Mutation p.F27L 0.43 deleterious(0.01) probably_damaging(0.94) TCGA-E2-A1IH-01 1 169562905 169562905 G A SELP Missense_Mutation p.T782M 0.53 tolerated(0.11) possibly_damaging(0.511) TCGA-E2-A1IH-01 1 211263988 211263988 C T KCNH1 Missense_Mutation p.E119K 0.50 deleterious(0) probably_damaging(0.981) TCGA-E2-A1IH-01 1 35223650 35223650 A C GJB5 Missense_Mutation p.Q240P 0.20 tolerated(0.07) benign(0.002) TCGA-E2-A1IH-01 1 40944896 40944896 T C ZFP69 5'UTR 0.13 TCGA-E2-A1IH-01 1 47759214 47759214 C G STIL Missense_Mutation p.W263S 0.10 deleterious(0.03) probably_damaging(0.919) TCGA-E2-A1IH-01 20 43052757 43052757 G A HNF4A Missense_Mutation p.R331H 0.14 deleterious(0) probably_damaging(0.996) TCGA-E2-A1IH-01 21 27254037 27254037 G A APP Nonsense_Mutation p.Q753* 0.14 TCGA-E2-A1IH-01 21 27254038 27254038 C A APP Missense_Mutation p.M752I 0.14 deleterious(0) probably_damaging(0.997) TCGA-E2-A1IH-01 2 179605501 179605501 C G TTN Missense_Mutation p.Q4153H 0.16 TCGA-E2-A1IH-01 2 179718227 179718227 G A CCDC141 Missense_Mutation p.S1062L 0.13 tolerated(0.05) benign(0.266) TCGA-E2-A1IH-01 2 198363536 198363537 - T HSPD1 Frame_Shift_Ins p.P13Tfs*53 0.24 TCGA-E2-A1IH-01 2 202245814 202245814 T C TRAK2 Missense_Mutation p.T733A 0.14 tolerated(0.38) benign(0.202) TCGA-E2-A1IH-01 2 43992655 43992655 C A PLEKHH2 Missense_Mutation p.T1467N 0.23 tolerated(0.23) benign(0.001) TCGA-E2-A1IH-01 2 68371831 68371831 C T WDR92 Missense_Mutation p.E101K 0.11 tolerated(0.34) benign(0.003) TCGA-E2-A1IH-01 2 68740758 68740758 A T APLF Missense_Mutation p.M190L 0.24 deleterious(0) probably_damaging(0.986) TCGA-E2-A1IH-01 3 113499918 113499918 C T ATP6V1A Missense_Mutation p.A35V 0.05 tolerated(0.16) benign(0.23) TCGA-E2-A1IH-01 3 126222869 126222869 C T UROC1 Missense_Mutation p.D291N 0.34 tolerated(0.21) benign(0.013) TCGA-E2-A1IH-01 3 15300446 15300446 G A SH3BP5 Missense_Mutation p.R261W 0.27 deleterious(0) probably_damaging(0.993) TCGA-E2-A1IH-01 3 180328183 180328183 C G TTC14 Missense_Mutation p.I722M 0.25 tolerated_low_confidence(0.26) unknown(0) TCGA-E2-A1IH-01 3 40528668 40528668 C T ZNF619 Nonsense_Mutation p.Q263* 0.42 TCGA-E2-A1IH-01 3 64142855 64142855 A G PRICKLE2 Missense_Mutation p.C195R 0.19 deleterious(0) probably_damaging(1) TCGA-E2-A1IH-01 4 2940561 2940561 T A NOP14 Missense_Mutation p.K857N 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.741) TCGA-E2-A1IH-01 5 37330153 37330153 G T NUP155 Silent p.R571R 0.31 TCGA-E2-A1IH-01 5 55042014 55042014 G C DDX4 Missense_Mutation p.G31A 0.28 tolerated_low_confidence(0.35) possibly_damaging(0.814) TCGA-E2-A1IH-01 5 75913319 75913319 G A F2RL2 3'UTR 0.28 TCGA-E2-A1IH-01 6 118886718 118886718 G T CEP85L Silent p.R335R 0.22 TCGA-E2-A1IH-01 6 149925801 149925801 G A KATNA1 Nonsense_Mutation p.R207* 0.09 TCGA-E2-A1IH-01 6 154412561 154412561 G C OPRM1 Missense_Mutation p.R466T 0.17 tolerated(0.1) probably_damaging(0.948) TCGA-E2-A1IH-01 6 159184541 159184541 A C SYTL3 Missense_Mutation p.K575Q 0.24 tolerated(0.05) benign(0.197) TCGA-E2-A1IH-01 6 76623827 76623827 G A MYO6 Missense_Mutation p.E1163K 0.44 tolerated(0.86) benign(0.211) TCGA-E2-A1IH-01 6 80746194 80746194 A T TTK Missense_Mutation p.I643F 0.06 deleterious(0) probably_damaging(0.983) TCGA-E2-A1IH-01 6 83869520 83869520 C A DOPEY1 Nonsense_Mutation p.S2268* 0.19 TCGA-E2-A1IH-01 7 108204886 108204886 A G THAP5 Missense_Mutation p.Y313H 0.26 tolerated(0.59) benign(0.003) TCGA-E2-A1IH-01 8 110346579 110346579 T C ENY2 5'UTR 0.08 TCGA-E2-A1IH-01 8 125711807 125711807 G A MTSS1 Silent p.D56D 0.20 TCGA-E2-A1IH-01 9 125329986 125329986 G T OR1L8 Missense_Mutation p.F257L 0.20 tolerated(0.24) benign(0.152) TCGA-E2-A1IH-01 9 130829386 130829386 C G NAIF1 5'UTR 0.12 TCGA-E2-A1IH-01 9 15489983 15489983 C A PSIP1 Splice_Site p.X96_splice 0.15 TCGA-E2-A1IH-01 9 66468857 66468857 C T RP11-262H14.1 RNA 0.12 TCGA-E2-A1IH-01 X 128650475 128650475 C G SMARCA1 Splice_Site p.X88_splice 0.36 TCGA-E2-A1IH-01 X 14871186 14871186 T A FANCB Missense_Mutation p.D434V 0.20 tolerated(0.2) benign(0.067) TCGA-E2-A1IH-01 X 48631863 48631863 C T GLOD5 3'UTR 0.10 TCGA-E2-A1IH-01 X 70149574 70149574 G T SLC7A3 Missense_Mutation p.P92T 0.28 deleterious(0) probably_damaging(0.969) TCGA-E2-A1II-01 10 128973602 128973602 G A FAM196A Missense_Mutation p.T353M 0.11 deleterious(0.02) benign(0.333) TCGA-E2-A1II-01 10 99216753 99216753 G A ZDHHC16 3'UTR 0.33 TCGA-E2-A1II-01 11 22215036 22215036 A C ANO5 5'UTR 0.33 TCGA-E2-A1II-01 12 50136033 50136033 C G TMBIM6 Silent p.P38P 0.22 TCGA-E2-A1II-01 12 53494525 53494525 C A IGFBP6 Missense_Mutation p.P122T 0.27 tolerated(0.1) benign(0.282) TCGA-E2-A1II-01 15 42807437 42807437 C G SNAP23 Missense_Mutation p.Q51E 0.14 deleterious(0.02) benign(0.128) TCGA-E2-A1II-01 16 30740827 30740827 T G SRCAP Missense_Mutation p.L2021V 0.09 possibly_damaging(0.899) TCGA-E2-A1II-01 17 7578556 7578556 T G TP53 Splice_Site p.X126_splice 0.27 TCGA-E2-A1II-01 18 50278619 50278619 C G DCC Missense_Mutation p.S96C 0.15 deleterious(0) probably_damaging(0.999) TCGA-E2-A1II-01 18 65178268 65178268 A T DSEL Missense_Mutation p.L1203Q 0.22 tolerated(0.18) benign(0.009) TCGA-E2-A1II-01 19 17986867 17986867 G A SLC5A5 Missense_Mutation p.R217H 0.20 tolerated(0.35) possibly_damaging(0.553) TCGA-E2-A1II-01 19 40904676 40904676 C G PRX Missense_Mutation p.E78Q 0.24 deleterious(0) possibly_damaging(0.742) TCGA-E2-A1II-01 19 42569462 42569462 C T GRIK5 Missense_Mutation p.G53R 0.39 tolerated(1) possibly_damaging(0.691) TCGA-E2-A1II-01 1 145533136 145533137 CC A ITGA10 Frame_Shift_Del p.P411Tfs*61 0.14 TCGA-E2-A1II-01 20 39798164 39798164 T A PLCG1 Missense_Mutation p.I883N 0.23 deleterious(0) possibly_damaging(0.883) TCGA-E2-A1II-01 20 60772932 60772932 C G MTG2 Missense_Mutation p.S126W 0.19 deleterious(0) probably_damaging(0.996) TCGA-E2-A1II-01 21 45846599 45846599 C T TRPM2 Silent p.A1284A 0.17 TCGA-E2-A1II-01 2 111886207 111886207 T A BCL2L11 Intron 0.17 TCGA-E2-A1II-01 2 128479557 128479557 C G WDR33 Missense_Mutation p.W508C 0.05 deleterious(0) unknown(0) TCGA-E2-A1II-01 3 111432831 111432831 G A PLCXD2 Missense_Mutation p.R241H 0.10 tolerated(0.29) benign(0) TCGA-E2-A1II-01 3 112987269 112987269 A T BOC Missense_Mutation p.Q167L 0.11 tolerated(0.14) possibly_damaging(0.456) TCGA-E2-A1II-01 4 134073920 134073920 C T PCDH10 Silent p.S875S 0.24 TCGA-E2-A1II-01 5 179200977 179200977 A T MAML1 Missense_Mutation p.N717I 0.42 deleterious(0.01) benign(0.14) TCGA-E2-A1II-01 6 142396871 142396871 T A NMBR Missense_Mutation p.T363S 0.26 tolerated(0.13) possibly_damaging(0.55) TCGA-E2-A1II-01 6 159029468 159029468 G C TMEM181 Silent p.L396L 0.19 TCGA-E2-A1II-01 6 87965080 87965080 T G ZNF292 Missense_Mutation p.F578C 0.24 deleterious(0) probably_damaging(0.998) TCGA-E2-A1II-01 7 45113873 45113873 G A CCM2 Missense_Mutation p.R328H 0.14 deleterious(0) probably_damaging(1) TCGA-E2-A1II-01 8 103297830 103297830 T C UBR5 Missense_Mutation p.M1799V 0.19 deleterious(0.05) benign(0.011) TCGA-E2-A1II-01 8 124243721 124243722 AG - C8orf76 Frame_Shift_Del p.D211Efs*7 0.11 TCGA-E2-A1II-01 8 38162915 38162915 C T WHSC1L1 Missense_Mutation p.R764H 0.12 deleterious(0) probably_damaging(0.999) TCGA-E2-A1II-01 9 26907965 26907965 A - PLAA Frame_Shift_Del p.E564Kfs*5 0.28 TCGA-E2-A1II-01 X 152612458 152612458 G A ZNF275 Silent p.E105E 0.13 TCGA-E2-A1II-01 X 29935696 29935696 T G IL1RAPL1 Silent p.V298V 0.14 TCGA-E2-A1II-01 X 50377007 50377007 T G SHROOM4 Missense_Mutation p.Q689P 0.18 tolerated(0.06) possibly_damaging(0.548) TCGA-E2-A1II-01 X 53562452 53562452 A C HUWE1 Missense_Mutation p.F4181C 0.23 unknown(0) TCGA-E2-A1II-01 X 57358083 57358083 A G FAAH2 Silent p.T155T 0.25 TCGA-E2-A1II-01 X 99662058 99662058 C G PCDH19 Missense_Mutation p.G513A 0.13 deleterious(0) probably_damaging(1) TCGA-E2-A1IJ-01 10 61831281 61831281 G T ANK3 Missense_Mutation p.Q3120K 0.17 possibly_damaging(0.857) TCGA-E2-A1IJ-01 10 88421081 88421081 G A OPN4 Missense_Mutation p.V348I 0.14 tolerated(0.12) benign(0.048) TCGA-E2-A1IJ-01 12 114793417 114793417 C T TBX5 Missense_Mutation p.V493M 0.32 tolerated_low_confidence(0.15) benign(0.023) TCGA-E2-A1IJ-01 12 115115446 115115446 T - TBX3 Frame_Shift_Del p.I294* 0.26 TCGA-E2-A1IJ-01 13 45010182 45010182 T C TSC22D1 Missense_Mutation p.M988V 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-E2-A1IJ-01 16 3656563 3656563 C A SLX4 Missense_Mutation p.L224F 0.27 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IJ-01 16 68857397 68857398 - T CDH1 Frame_Shift_Ins p.T679Dfs*9 0.28 TCGA-E2-A1IJ-01 17 76089144 76089144 G A TNRC6C Nonsense_Mutation p.W1364* 0.23 TCGA-E2-A1IJ-01 17 80013676 80013676 C T GPS1 Missense_Mutation p.S310F 0.17 tolerated(0.27) benign(0.029) TCGA-E2-A1IJ-01 19 42754680 42754680 C T ERF Silent p.S20S 0.11 TCGA-E2-A1IJ-01 20 35443694 35443694 C A SOGA1 Silent p.L717L 0.19 TCGA-E2-A1IJ-01 20 61391610 61391610 G A NTSR1 Silent p.T416T 0.19 TCGA-E2-A1IJ-01 5 177171957 177171957 G A FAM153A Missense_Mutation p.R14W 0.14 tolerated_low_confidence(0.12) benign(0) TCGA-E2-A1IJ-01 6 44219526 44219526 G T HSP90AB1 Missense_Mutation p.R456L 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A1IJ-01 6 44219527 44219527 C T HSP90AB1 Silent p.R456R 0.15 TCGA-E2-A1IJ-01 7 149517795 149517795 C T SSPO RNA 0.43 TCGA-E2-A1IJ-01 7 154767672 154767672 C - PAXIP1 Frame_Shift_Del p.E270Kfs*5 0.28 TCGA-E2-A1IJ-01 7 23309653 23309653 A C GPNMB Missense_Mutation p.S442R 0.37 deleterious(0) benign(0.012) TCGA-E2-A1IJ-01 8 145580024 145580024 G T FBXL6 Silent p.R387R 0.19 TCGA-E2-A1IJ-01 8 30557645 30557645 G A GSR Silent p.S216S 0.13 TCGA-E2-A1IJ-01 9 134027158 134027158 T G NUP214 Silent p.T771T 0.18 TCGA-E2-A1IK-01 10 118386510 118386510 G A PNLIPRP2 Splice_Site p.X155_splice 0.05 TCGA-E2-A1IK-01 10 43696327 43696327 T A RASGEF1A Missense_Mutation p.T157S 0.20 tolerated(0.36) benign(0.004) TCGA-E2-A1IK-01 11 71155209 71155209 G C DHCR7 Missense_Mutation p.P51A 0.11 deleterious(0.01) probably_damaging(1) TCGA-E2-A1IK-01 12 18443835 18443835 A C PIK3C2G Missense_Mutation p.K270Q 0.19 tolerated(0.29) benign(0.252) TCGA-E2-A1IK-01 14 106322075 106322075 G A IGHM Silent p.D83D 0.10 TCGA-E2-A1IK-01 15 84506850 84506850 T A ADAMTSL3 Missense_Mutation p.C204S 0.28 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IK-01 16 11154805 11154805 G A CLEC16A Missense_Mutation p.R681Q 0.21 tolerated(1) benign(0.003) TCGA-E2-A1IK-01 16 53706824 53706824 T C RPGRIP1L Silent p.K329K 0.20 TCGA-E2-A1IK-01 16 67201760 67201760 C - HSF4 Frame_Shift_Del p.I332Sfs*64 0.21 TCGA-E2-A1IK-01 16 81737574 81737574 G T CMIP Missense_Mutation p.G659C 0.32 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IK-01 19 16905357 16905357 C T NWD1 Silent p.L1099L 0.22 TCGA-E2-A1IK-01 1 223285435 223285435 A T TLR5 Missense_Mutation p.D313E 0.15 tolerated(0.75) benign(0.002) TCGA-E2-A1IK-01 1 32384627 32384627 T A PTP4A2 Missense_Mutation p.M14L 0.24 tolerated(0.19) benign(0.001) TCGA-E2-A1IK-01 1 39798985 39798985 A G MACF1 Intron 0.27 TCGA-E2-A1IK-01 22 19127488 19127488 G C DGCR14 Silent p.V150V 0.26 TCGA-E2-A1IK-01 2 3691463 3691463 G A COLEC11 Missense_Mutation p.A205T 0.26 tolerated(0.36) benign(0.016) TCGA-E2-A1IK-01 3 47058736 47058737 - T SETD2 Frame_Shift_Ins p.H2514Qfs*6 0.09 TCGA-E2-A1IK-01 5 132159726 132159726 C T SHROOM1 Missense_Mutation p.E543K 0.19 deleterious(0.04) possibly_damaging(0.624) TCGA-E2-A1IK-01 6 149826628 149826628 T C PPIL4 Silent p.P480P 0.04 TCGA-E2-A1IL-01 11 125490851 125490851 A C STT3A 3'UTR 0.57 TCGA-E2-A1IL-01 11 134014849 134014849 G A JAM3 Missense_Mutation p.R191H 0.31 tolerated(0.55) benign(0.009) TCGA-E2-A1IL-01 11 55905072 55905072 C T OR8J3 Silent p.G41G 0.06 TCGA-E2-A1IL-01 11 57077320 57077320 G A TNKS1BP1 Silent p.S955S 0.41 TCGA-E2-A1IL-01 11 73103329 73103329 T G RELT Silent p.P147P 0.27 TCGA-E2-A1IL-01 12 122497085 122497085 C T BCL7A 3'UTR 0.30 TCGA-E2-A1IL-01 14 21869159 21869174 GTCATCATCTTTCAGA - CHD8 Frame_Shift_Del p.L1411Wfs*59 0.09 TCGA-E2-A1IL-01 15 86768172 86768172 G T AGBL1 Missense_Mutation p.L126F 0.27 deleterious(0.02) possibly_damaging(0.538) TCGA-E2-A1IL-01 17 40956304 40956305 AA - CNTD1 Frame_Shift_Del p.K103Efs*56 0.43 TCGA-E2-A1IL-01 17 5009336 5009336 T G ZNF232 Missense_Mutation p.H373P 0.38 tolerated(0.08) benign(0.44) TCGA-E2-A1IL-01 19 18474258 18474258 C T PGPEP1 Silent p.A165A 0.36 TCGA-E2-A1IL-01 19 44005930 44005930 G T PHLDB3 Missense_Mutation p.Q164K 0.27 tolerated(0.86) benign(0.098) TCGA-E2-A1IL-01 19 9868344 9868345 CG - ZNF846 Frame_Shift_Del p.R470Nfs*11 0.28 TCGA-E2-A1IL-01 1 176015326 176015326 G A RFWD2 Missense_Mutation p.S471L 0.08 deleterious(0) probably_damaging(0.992) TCGA-E2-A1IL-01 1 240370352 240370352 C T FMN2 Missense_Mutation p.S747F 0.46 unknown(0) TCGA-E2-A1IL-01 1 6655387 6655387 A C KLHL21 Intron 0.42 TCGA-E2-A1IL-01 20 40828001 40828001 G T PTPRT Silent p.T790T 0.34 TCGA-E2-A1IL-01 20 47607613 47607613 T C ARFGEF2 Missense_Mutation p.F951L 0.38 deleterious(0) probably_damaging(0.925) TCGA-E2-A1IL-01 2 131883435 131883435 G A PLEKHB2 Missense_Mutation p.M49I 0.31 tolerated(0.47) benign(0.267) TCGA-E2-A1IL-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.50 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A1IL-01 4 73942663 73942663 A C ANKRD17 Silent p.P2582P 0.20 TCGA-E2-A1IL-01 5 140595540 140595540 C T PCDHB13 Silent p.F615F 0.38 TCGA-E2-A1IL-01 5 162910263 162910263 C A HMMR Intron 0.35 TCGA-E2-A1IL-01 6 13365419 13365419 G A GFOD1 Silent p.G243G 0.22 TCGA-E2-A1IL-01 6 152751745 152751745 G A SYNE1 Nonsense_Mutation p.R1521* 0.63 TCGA-E2-A1IL-01 6 2955880 2955880 C T SERPINB6 Missense_Mutation p.G64S 0.27 tolerated(0.16) probably_damaging(0.916) TCGA-E2-A1IL-01 6 42712938 42712938 A G TBCC Missense_Mutation p.Y292H 0.26 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IL-01 7 31378167 31378167 G A NEUROD6 Missense_Mutation p.A239V 0.47 deleterious(0.04) benign(0.024) TCGA-E2-A1IL-01 7 32598971 32598971 T G AVL9 Missense_Mutation p.I370M 0.36 tolerated(0.1) possibly_damaging(0.824) TCGA-E2-A1IL-01 7 37896882 37896882 G C NME8 Missense_Mutation p.A69P 0.17 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IL-01 7 45699643 45699643 A T ADCY1 Missense_Mutation p.K437M 0.07 deleterious(0.05) probably_damaging(0.964) TCGA-E2-A1IL-01 9 35649944 35649944 G A SIT1 Silent p.P164P 0.40 TCGA-E2-A1IL-01 X 139586876 139586876 G T SOX3 Missense_Mutation p.A117E 0.33 tolerated(0.16) probably_damaging(0.983) TCGA-E2-A1IL-01 X 9679670 9679670 G C TBL1X Missense_Mutation p.V487L 0.09 deleterious(0.01) possibly_damaging(0.9) TCGA-E2-A1IN-01 10 105207136 105207136 G - CALHM2 Frame_Shift_Del p.R249Afs*15 0.38 TCGA-E2-A1IN-01 10 122622406 122622406 A G WDR11 Missense_Mutation p.K229R 0.46 tolerated(0.48) benign(0.004) TCGA-E2-A1IN-01 10 124657340 124657340 G A RP11-564D11.3 RNA 0.27 TCGA-E2-A1IN-01 10 134161507 134161507 G C LRRC27 Missense_Mutation p.E191D 0.38 tolerated(0.07) benign(0.017) TCGA-E2-A1IN-01 10 3149487 3149487 G A PFKP Missense_Mutation p.E286K 0.28 deleterious(0.03) benign(0.263) TCGA-E2-A1IN-01 10 33190469 33190469 C T ITGB1 3'UTR 0.20 TCGA-E2-A1IN-01 10 53227489 53227489 A T PRKG1 Missense_Mutation p.K162M 0.32 tolerated(0.13) possibly_damaging(0.555) TCGA-E2-A1IN-01 10 5788925 5788925 C G FAM208B Missense_Mutation p.Q1181E 0.28 tolerated(0.12) benign(0.037) TCGA-E2-A1IN-01 10 58118633 58118633 C G ZWINT Missense_Mutation p.D186H 0.24 deleterious(0) benign(0.009) TCGA-E2-A1IN-01 10 67862936 67862936 C G CTNNA3 Missense_Mutation p.Q652H 0.40 tolerated(0.16) unknown(0) TCGA-E2-A1IN-01 10 70450589 70450589 C G TET1 Missense_Mutation p.P1810R 0.21 tolerated(0.08) benign(0.105) TCGA-E2-A1IN-01 10 73579279 73579279 C T PSAP Silent p.E431E 0.35 TCGA-E2-A1IN-01 10 95415556 95415556 G C PDE6C Missense_Mutation p.E659Q 0.15 deleterious(0.03) possibly_damaging(0.744) TCGA-E2-A1IN-01 11 101832484 101832484 G A KIAA1377 Missense_Mutation p.E240K 0.25 deleterious(0.03) possibly_damaging(0.604) TCGA-E2-A1IN-01 11 102935019 102935019 C T DCUN1D5 Missense_Mutation p.D215N 0.21 deleterious(0) probably_damaging(0.973) TCGA-E2-A1IN-01 11 118895783 118895783 C G SLC37A4 Missense_Mutation p.G398A 0.41 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 11 128681004 128681004 G A FLI1 3'UTR 0.53 TCGA-E2-A1IN-01 11 45203410 45203410 C T PRDM11 Silent p.L31L 0.37 TCGA-E2-A1IN-01 11 56468331 56468331 A C OR9G1 Silent p.S156S 0.14 TCGA-E2-A1IN-01 11 57457520 57457520 C T ZDHHC5 Silent p.C134C 0.34 TCGA-E2-A1IN-01 11 63594409 63594409 C T C11orf84 Missense_Mutation p.P315L 0.25 deleterious_low_confidence(0) possibly_damaging(0.814) TCGA-E2-A1IN-01 11 66807366 66807366 G C SYT12 Missense_Mutation p.E105Q 0.34 deleterious_low_confidence(0.01) benign(0.115) TCGA-E2-A1IN-01 11 7949551 7949551 C G OR10A6 Missense_Mutation p.R220P 0.50 deleterious(0.03) possibly_damaging(0.763) TCGA-E2-A1IN-01 11 92568091 92568091 G A FAT3 Silent p.L3309L 0.38 TCGA-E2-A1IN-01 12 113906151 113906151 G T LHX5 Missense_Mutation p.D152E 0.38 tolerated(0.14) benign(0.005) TCGA-E2-A1IN-01 12 41419117 41419117 G C CNTN1 Missense_Mutation p.E897Q 0.40 tolerated(0.4) benign(0.007) TCGA-E2-A1IN-01 12 43896138 43896138 C T ADAMTS20 Missense_Mutation p.M228I 0.35 tolerated(0.24) benign(0.003) TCGA-E2-A1IN-01 12 53225306 53225306 G C KRT79 Silent p.L194L 0.40 TCGA-E2-A1IN-01 12 53687349 53687349 G A ESPL1 3'UTR 0.27 TCGA-E2-A1IN-01 12 57637603 57637603 C G STAC3 Missense_Mutation p.E363Q 0.31 tolerated(0.12) probably_damaging(0.999) TCGA-E2-A1IN-01 12 58002372 58002372 G A DTX3 Missense_Mutation p.E274K 0.28 deleterious(0.03) benign(0.077) TCGA-E2-A1IN-01 12 66522788 66522788 G A LLPH Silent p.L33L 0.29 TCGA-E2-A1IN-01 12 82147853 82147853 G A PPFIA2 Missense_Mutation p.R50W 0.37 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IN-01 14 100625894 100625894 C G DEGS2 Missense_Mutation p.E11Q 0.36 tolerated(0.12) probably_damaging(0.967) TCGA-E2-A1IN-01 14 104506621 104506621 G A TDRD9 Missense_Mutation p.D1269N 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-E2-A1IN-01 14 20248850 20248850 T A OR4M1 Nonsense_Mutation p.Y123* 0.05 TCGA-E2-A1IN-01 14 20612635 20612635 A G OR4N5 Missense_Mutation p.I247M 0.40 deleterious(0.02) benign(0.171) TCGA-E2-A1IN-01 14 23075325 23075325 C A ABHD4 Intron 0.32 TCGA-E2-A1IN-01 14 45605267 45605267 G A FANCM Silent p.T11T 0.54 TCGA-E2-A1IN-01 14 56107112 56107112 C T KTN1 Silent p.F645F 0.30 TCGA-E2-A1IN-01 14 74004171 74004171 G A ACOT1 Missense_Mutation p.D16N 0.22 deleterious(0.03) probably_damaging(1) TCGA-E2-A1IN-01 14 94718190 94718190 C G PPP4R4 Missense_Mutation p.L608V 0.36 tolerated(1) benign(0.069) TCGA-E2-A1IN-01 15 100996101 100996101 C T CERS3 Missense_Mutation p.M332I 0.30 tolerated(0.21) benign(0.008) TCGA-E2-A1IN-01 15 45454016 45454016 C G DUOX1 Missense_Mutation p.L1313V 0.44 deleterious(0.01) possibly_damaging(0.718) TCGA-E2-A1IN-01 15 48787352 48787352 G A FBN1 Missense_Mutation p.A882V 0.38 probably_damaging(0.999) TCGA-E2-A1IN-01 15 72180453 72180453 G A MYO9A Missense_Mutation p.S1716L 0.32 tolerated(0.21) benign(0.003) TCGA-E2-A1IN-01 15 72432133 72432133 G A SENP8 Missense_Mutation p.E57K 0.36 deleterious(0.01) benign(0.274) TCGA-E2-A1IN-01 15 74704309 74704309 G A SEMA7A Missense_Mutation p.H447Y 0.22 tolerated(0.17) possibly_damaging(0.46) TCGA-E2-A1IN-01 15 78305373 78305373 C T TBC1D2B Missense_Mutation p.E688K 0.39 tolerated(0.59) benign(0.004) TCGA-E2-A1IN-01 15 91136895 91136895 C T CRTC3 Missense_Mutation p.R87W 0.36 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IN-01 16 1256238 1256238 A G CACNA1H Missense_Mutation p.D913G 0.15 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IN-01 16 14339391 14339391 C T MKL2 Silent p.L362L 0.47 TCGA-E2-A1IN-01 16 22545293 22545293 C G NPIPB5 Missense_Mutation p.P330R 0.31 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-E2-A1IN-01 16 30004965 30004965 C T HIRIP3 Missense_Mutation p.M468I 0.44 tolerated(0.07) possibly_damaging(0.871) TCGA-E2-A1IN-01 16 30793337 30793337 G C ZNF629 Nonsense_Mutation p.S771* 0.38 TCGA-E2-A1IN-01 16 31336602 31336602 G T ITGAM Silent p.V795V 0.35 TCGA-E2-A1IN-01 16 4563801 4563801 G C CDIP1 Missense_Mutation p.P46R 0.38 deleterious(0) benign(0.086) TCGA-E2-A1IN-01 16 89651219 89651219 A G CPNE7 Missense_Mutation p.Y257C 0.71 deleterious(0.01) probably_damaging(0.971) TCGA-E2-A1IN-01 16 89651226 89651226 C T CPNE7 Silent p.V259V 0.72 TCGA-E2-A1IN-01 17 10206539 10206539 A T MYH13 Missense_Mutation p.S1881T 0.61 tolerated(0.14) benign(0.019) TCGA-E2-A1IN-01 17 10447097 10447097 G A MYH2 Silent p.I224I 0.49 TCGA-E2-A1IN-01 17 12649343 12649343 C G MYOCD Missense_Mutation p.S360C 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-E2-A1IN-01 17 12649384 12649384 C A MYOCD Missense_Mutation p.L374M 0.47 deleterious(0) probably_damaging(0.999) TCGA-E2-A1IN-01 17 26912942 26912942 G A SPAG5 Silent p.L560L 0.41 TCGA-E2-A1IN-01 17 26918847 26918847 C G SPAG5 Missense_Mutation p.D436H 0.48 deleterious(0.03) probably_damaging(0.961) TCGA-E2-A1IN-01 17 44067416 44067416 C G MAPT Missense_Mutation p.S452C 0.32 deleterious(0) probably_damaging(0.971) TCGA-E2-A1IN-01 17 46703217 46703217 C - HOXB9 Frame_Shift_Del p.E139Kfs*62 0.23 TCGA-E2-A1IN-01 17 48538641 48538641 C T ACSF2 Silent p.L121L 0.47 TCGA-E2-A1IN-01 17 56356465 56356465 G C MPO Silent p.L263L 0.33 TCGA-E2-A1IN-01 17 62969020 62969020 G T AMZ2P1 RNA 0.29 TCGA-E2-A1IN-01 17 7100285 7100285 G A DLG4 Missense_Mutation p.R335W 0.57 tolerated(0.08) probably_damaging(0.992) TCGA-E2-A1IN-01 17 7404270 7404270 G A POLR2A Silent p.E631E 0.33 TCGA-E2-A1IN-01 17 7578460 7578460 A C TP53 Missense_Mutation p.V157G 0.65 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 17 7736442 7736442 G C DNAH2 Missense_Mutation p.K4344N 0.39 benign(0.22) TCGA-E2-A1IN-01 17 7736909 7736909 G C DNAH2 3'UTR 0.30 TCGA-E2-A1IN-01 17 7796626 7796626 C G CHD3 Missense_Mutation p.P237A 0.32 benign(0.42) TCGA-E2-A1IN-01 17 80038680 80038680 C G FASN Missense_Mutation p.Q2238H 0.33 deleterious(0.01) benign(0.382) TCGA-E2-A1IN-01 17 8216367 8216367 G A ARHGEF15 Silent p.P243P 0.18 TCGA-E2-A1IN-01 18 21417017 21417017 C T LAMA3 Silent p.D1019D 0.63 TCGA-E2-A1IN-01 18 32949307 32949307 G C ZNF396 Missense_Mutation p.L294V 0.64 deleterious(0) possibly_damaging(0.801) TCGA-E2-A1IN-01 18 54305679 54305679 G A TXNL1 5'UTR 0.38 TCGA-E2-A1IN-01 19 10381799 10381799 C T ICAM1 5'UTR 0.38 TCGA-E2-A1IN-01 19 1045035 1045035 C G ABCA7 Nonsense_Mutation p.S417* 0.56 TCGA-E2-A1IN-01 19 1272102 1272102 G T CIRBP Intron 0.31 TCGA-E2-A1IN-01 19 1272106 1272106 C T CIRBP Intron 0.28 TCGA-E2-A1IN-01 19 1272306 1272306 C G CIRBP Intron 0.24 TCGA-E2-A1IN-01 19 1272504 1272504 C T CIRBP 3'UTR 0.33 TCGA-E2-A1IN-01 19 1272535 1272535 C T CIRBP 3'UTR 0.24 TCGA-E2-A1IN-01 19 1272552 1272552 C G CIRBP 3'UTR 0.25 TCGA-E2-A1IN-01 19 19312527 19312527 G A RFXANK Silent p.%3D 0.26 TCGA-E2-A1IN-01 19 24102957 24102969 TGATTTGGAAAGC - ZNF726 Intron 0.32 TCGA-E2-A1IN-01 19 31039733 31039733 C T ZNF536 Silent p.I1069I 0.53 TCGA-E2-A1IN-01 19 3759707 3759707 C T APBA3 Missense_Mutation p.E186K 0.41 tolerated(0.13) benign(0.01) TCGA-E2-A1IN-01 19 39789245 39789245 G A IFNL1 3'UTR 0.55 TCGA-E2-A1IN-01 19 39955656 39955656 C G SUPT5H Silent p.L281L 0.34 TCGA-E2-A1IN-01 19 42585045 42585045 G A ZNF574 Missense_Mutation p.E763K 0.32 deleterious(0) possibly_damaging(0.849) TCGA-E2-A1IN-01 19 44791480 44791480 C G ZNF235 Missense_Mutation p.R703T 0.24 deleterious(0) probably_damaging(0.92) TCGA-E2-A1IN-01 19 44980834 44980834 G A ZNF180 Nonsense_Mutation p.Q622* 0.09 TCGA-E2-A1IN-01 19 45209092 45209092 C T CEACAM16 Silent p.T298T 0.22 TCGA-E2-A1IN-01 19 49424449 49424449 G A NUCB1 Silent p.L347L 0.31 TCGA-E2-A1IN-01 19 49902741 49902741 G C CCDC155 Missense_Mutation p.E259Q 0.29 tolerated(0.21) benign(0.253) TCGA-E2-A1IN-01 19 50161137 50161137 C T SCAF1 Silent p.A1246A 0.54 TCGA-E2-A1IN-01 19 52537854 52537854 C G ZNF432 Missense_Mutation p.V360L 0.23 tolerated(1) benign(0.006) TCGA-E2-A1IN-01 19 53761654 53761654 C A VN1R2 Missense_Mutation p.P9H 0.16 unknown(0) TCGA-E2-A1IN-01 1 10166258 10166258 C G UBE4B Silent p.L271L 0.23 TCGA-E2-A1IN-01 1 109793212 109793212 C T CELSR2 Missense_Mutation p.R171W 0.51 tolerated(0.19) benign(0.025) TCGA-E2-A1IN-01 1 11008331 11008331 C G C1orf127 Missense_Mutation p.E621Q 0.36 deleterious(0.05) possibly_damaging(0.549) TCGA-E2-A1IN-01 1 11008427 11008427 G T C1orf127 Missense_Mutation p.Q589K 0.47 tolerated(0.13) benign(0.346) TCGA-E2-A1IN-01 1 11270881 11270881 C G MTOR Missense_Mutation p.R1215T 0.22 deleterious(0) benign(0.212) TCGA-E2-A1IN-01 1 115251203 115251203 C T NRAS Missense_Mutation p.D175N 0.30 tolerated(0.39) benign(0) TCGA-E2-A1IN-01 1 117078619 117078619 G A CD58 Missense_Mutation p.S199L 0.29 tolerated(0.11) benign(0.052) TCGA-E2-A1IN-01 1 151138294 151138294 C G LYSMD1 5'UTR 0.43 TCGA-E2-A1IN-01 1 151509297 151509297 G A CGN Missense_Mutation p.R1133H 0.61 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 1 152188955 152188955 C T HRNR Missense_Mutation p.R1717Q 0.11 unknown(0) TCGA-E2-A1IN-01 1 153283097 153283097 G C PGLYRP3 Silent p.L15L 0.11 TCGA-E2-A1IN-01 1 154936264 154936264 G C SHC1 3'UTR 0.37 TCGA-E2-A1IN-01 1 154991075 154991075 G C DCST2 Nonsense_Mutation p.S756* 0.15 TCGA-E2-A1IN-01 1 156737729 156737729 C G PRCC Missense_Mutation p.Q56E 0.31 tolerated_low_confidence(0.13) unknown(0) TCGA-E2-A1IN-01 1 161518251 161518251 G C FCGR3A Silent p.L129L 0.11 TCGA-E2-A1IN-01 1 16736350 16736350 C G SPATA21 Missense_Mutation p.Q111H 0.31 tolerated(0.09) benign(0.332) TCGA-E2-A1IN-01 1 16890631 16890631 G A NBPF1 Missense_Mutation p.S1076L 0.06 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-E2-A1IN-01 1 173884020 173884020 A G SERPINC1 Missense_Mutation p.W27R 0.10 deleterious(0) possibly_damaging(0.677) TCGA-E2-A1IN-01 1 177250316 177250316 G T BRINP2 Missense_Mutation p.M668I 0.25 tolerated(0.22) benign(0.01) TCGA-E2-A1IN-01 1 179095533 179095533 G C ABL2 Missense_Mutation p.I222M 0.41 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 1 179095544 179095544 G C ABL2 Missense_Mutation p.H219D 0.42 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 1 190068164 190068164 G T BRINP3 Missense_Mutation p.P429T 0.23 tolerated(0.35) benign(0.084) TCGA-E2-A1IN-01 1 198691597 198691597 C G PTPRC Nonsense_Mutation p.S571* 0.18 TCGA-E2-A1IN-01 1 200635322 200635322 C G DDX59 Missense_Mutation p.E183Q 0.44 tolerated(0.26) benign(0.023) TCGA-E2-A1IN-01 1 207106470 207106470 C G PIGR Missense_Mutation p.D583H 0.41 tolerated(0.11) benign(0.304) TCGA-E2-A1IN-01 1 233161098 233161098 C A PCNXL2 Nonsense_Mutation p.E1467* 0.34 TCGA-E2-A1IN-01 1 24469608 24469608 C T IL22RA1 5'UTR 0.47 TCGA-E2-A1IN-01 1 32676870 32676870 C G DCDC2B Intron 0.36 TCGA-E2-A1IN-01 1 32843862 32843862 G A BSDC1 Missense_Mutation p.S201L 0.41 tolerated(0.19) benign(0.021) TCGA-E2-A1IN-01 1 65243506 65243506 C T RAVER2 Silent p.L173L 0.34 TCGA-E2-A1IN-01 1 71512883 71512883 C T PTGER3 Silent p.S126S 0.45 TCGA-E2-A1IN-01 1 92649701 92649701 G C KIAA1107 Missense_Mutation p.Q1293H 0.35 deleterious(0) probably_damaging(0.994) TCGA-E2-A1IN-01 20 2640352 2640352 G C IDH3B Missense_Mutation p.H335D 0.10 deleterious(0) possibly_damaging(0.841) TCGA-E2-A1IN-01 20 39833585 39833585 G T ZHX3 5'UTR 0.29 TCGA-E2-A1IN-01 20 42204933 42204933 G A SGK2 Missense_Mutation p.G315R 0.27 tolerated(0.48) benign(0.022) TCGA-E2-A1IN-01 20 43615911 43615911 G A STK4 Missense_Mutation p.D167N 0.43 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 20 44684870 44684870 G A SLC12A5 Missense_Mutation p.E980K 0.14 tolerated(0.18) benign(0.007) TCGA-E2-A1IN-01 20 49493134 49493134 C T BCAS4 3'UTR 0.12 TCGA-E2-A1IN-01 20 50286620 50286620 G C ATP9A Missense_Mutation p.F403L 0.15 tolerated(0.63) benign(0.168) TCGA-E2-A1IN-01 20 61458148 61458148 G A COL9A3 Silent p.G256G 0.28 TCGA-E2-A1IN-01 20 62293270 62293270 C T RTEL1 Silent p.I123I 0.20 TCGA-E2-A1IN-01 21 33709732 33709732 G A URB1 Silent p.G1534G 0.34 TCGA-E2-A1IN-01 21 34012090 34012090 C G SYNJ1 Splice_Site p.X1236_splice 0.44 TCGA-E2-A1IN-01 21 39426783 39426783 C T DSCR4 3'UTR 0.24 TCGA-E2-A1IN-01 22 32180825 32180825 G T DEPDC5 Silent p.V196V 0.44 TCGA-E2-A1IN-01 22 36054859 36054859 C G APOL6 Missense_Mutation p.S83C 0.12 tolerated(0.05) possibly_damaging(0.861) TCGA-E2-A1IN-01 22 38539256 38539256 G A PLA2G6 Silent p.P155P 0.28 TCGA-E2-A1IN-01 22 46656331 46656331 A T PKDREJ Silent p.A963A 0.50 TCGA-E2-A1IN-01 22 46751468 46751468 G A TRMU Missense_Mutation p.R334H 0.19 deleterious(0.05) possibly_damaging(0.87) TCGA-E2-A1IN-01 2 109102990 109102990 A G GCC2 Silent p.S1272S 0.41 TCGA-E2-A1IN-01 2 11780601 11780601 C T GREB1 3'UTR 0.12 TCGA-E2-A1IN-01 2 152541307 152541307 A G NEB Silent p.Y940Y 0.20 TCGA-E2-A1IN-01 2 20113974 20113974 G A WDR35 Silent p.L1073L 0.22 TCGA-E2-A1IN-01 2 225244906 225244906 A C FAM124B Missense_Mutation p.L251R 0.23 tolerated(0.19) benign(0.075) TCGA-E2-A1IN-01 2 231077589 231077589 C T SP110 Missense_Mutation p.S157N 0.12 tolerated(0.18) benign(0.383) TCGA-E2-A1IN-01 2 233346234 233346234 G A ECEL1 Silent p.F657F 0.21 TCGA-E2-A1IN-01 2 26534505 26534505 G A GPR113 Silent p.F697F 0.15 TCGA-E2-A1IN-01 2 55253275 55253275 C T RTN4 Missense_Mutation p.E654K 0.50 deleterious(0) probably_damaging(0.971) TCGA-E2-A1IN-01 2 85280380 85280380 G A KCMF1 Missense_Mutation p.E332K 0.23 tolerated(0.28) benign(0.039) TCGA-E2-A1IN-01 2 99763869 99763869 C G C2ORF15 5'UTR 0.49 TCGA-E2-A1IN-01 3 118865557 118865557 G T C3orf30 Missense_Mutation p.G174V 0.21 tolerated(0.15) probably_damaging(0.998) TCGA-E2-A1IN-01 3 122642520 122642520 G A SEMA5B Nonsense_Mutation p.Q460* 0.48 TCGA-E2-A1IN-01 3 142266743 142266743 C T ATR Missense_Mutation p.E1061K 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-E2-A1IN-01 3 15727589 15727589 C T ANKRD28 Missense_Mutation p.D667N 0.50 deleterious(0) possibly_damaging(0.564) TCGA-E2-A1IN-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.44 deleterious(0.04) probably_damaging(0.96) TCGA-E2-A1IN-01 3 197574833 197574833 G T LRCH3 Nonsense_Mutation p.E491* 0.52 TCGA-E2-A1IN-01 3 3081704 3081704 C T CNTN4 Intron 0.58 TCGA-E2-A1IN-01 3 38645493 38645493 T A SCN5A Missense_Mutation p.R534W 0.27 tolerated(0.1) probably_damaging(0.992) TCGA-E2-A1IN-01 3 38645494 38645494 G A SCN5A Silent p.R533R 0.29 TCGA-E2-A1IN-01 3 39425264 39425264 G A SLC25A38 Missense_Mutation p.D17N 0.60 tolerated_low_confidence(0.12) benign(0.002) TCGA-E2-A1IN-01 3 48609475 48609475 C T COL7A1 Missense_Mutation p.E2343K 0.62 probably_damaging(0.991) TCGA-E2-A1IN-01 3 50608618 50608618 C T HEMK1 Missense_Mutation p.S28L 0.41 tolerated(0.18) benign(0.005) TCGA-E2-A1IN-01 3 53531432 53531432 C G CACNA1D Missense_Mutation p.F107L 0.56 tolerated(0.39) probably_damaging(0.99) TCGA-E2-A1IN-01 3 58190568 58190568 C G DNASE1L3 Missense_Mutation p.D121H 0.44 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 3 64133158 64133158 G A PRICKLE2 Silent p.R336R 0.55 TCGA-E2-A1IN-01 3 69101320 69101320 C T TMF1 5'UTR 0.21 TCGA-E2-A1IN-01 3 95374408 95374408 G T MTHFD2P1 RNA 0.27 TCGA-E2-A1IN-01 4 109669230 109669230 C G ETNPPL Missense_Mutation p.R338T 0.16 tolerated(0.38) benign(0.035) TCGA-E2-A1IN-01 4 114278404 114278404 C A ANK2 Missense_Mutation p.T2877K 0.29 possibly_damaging(0.628) TCGA-E2-A1IN-01 4 1348587 1348587 C G UVSSA Silent p.L333L 0.36 TCGA-E2-A1IN-01 4 15638232 15638232 G A FBXL5 Silent p.F217F 0.35 TCGA-E2-A1IN-01 4 2210055 2210055 C G POLN Missense_Mutation p.E125Q 0.32 tolerated(0.24) benign(0.025) TCGA-E2-A1IN-01 4 247396 247396 G C ZNF876P RNA 0.48 TCGA-E2-A1IN-01 4 25005818 25005818 C G LGI2 Missense_Mutation p.G298A 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-E2-A1IN-01 4 38907253 38907253 G A FAM114A1 Missense_Mutation p.E183K 0.34 tolerated(0.31) benign(0.029) TCGA-E2-A1IN-01 4 76805791 76805791 G T PPEF2 Missense_Mutation p.F234L 0.24 tolerated(0.72) possibly_damaging(0.575) TCGA-E2-A1IN-01 4 84361040 84361040 T C HELQ Missense_Mutation p.E595G 0.19 tolerated(0.27) benign(0.001) TCGA-E2-A1IN-01 5 10681199 10681199 C G DAP Missense_Mutation p.R93T 0.55 tolerated(0.08) benign(0.003) TCGA-E2-A1IN-01 5 127647574 127647574 C G FBN2 Intron 0.50 TCGA-E2-A1IN-01 5 13769169 13769169 G A DNAH5 Missense_Mutation p.A3266V 0.47 possibly_damaging(0.787) TCGA-E2-A1IN-01 5 138980017 138980017 G A UBE2D2 Missense_Mutation p.D29N 0.39 tolerated_low_confidence(0.1) possibly_damaging(0.874) TCGA-E2-A1IN-01 5 140180926 140180926 C G PCDHA3 Missense_Mutation p.I48M 0.39 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-E2-A1IN-01 5 148885086 148885086 G C CSNK1A1 Silent p.A338A 0.34 TCGA-E2-A1IN-01 5 159842203 159842203 C T SLU7 Nonsense_Mutation p.W33* 0.49 TCGA-E2-A1IN-01 5 71638822 71638822 C G PTCD2 Missense_Mutation p.Q263E 0.05 deleterious(0) benign(0.37) TCGA-E2-A1IN-01 5 7709482 7709482 C T ADCY2 Silent p.N520N 0.24 TCGA-E2-A1IN-01 6 109814642 109814642 C G AK9 Missense_Mutation p.R1889T 0.24 deleterious(0) probably_damaging(0.996) TCGA-E2-A1IN-01 6 116950846 116950846 A C RSPH4A Silent p.T593T 0.09 TCGA-E2-A1IN-01 6 129622012 129622012 T A LAMA2 Missense_Mutation p.C1057S 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A1IN-01 6 138754770 138754770 G C NHSL1 Missense_Mutation p.P242A 0.41 tolerated(0.05) benign(0.061) TCGA-E2-A1IN-01 6 31730243 31730243 C T MSH5 Missense_Mutation p.P815S 0.16 tolerated(0.11) benign(0.007) TCGA-E2-A1IN-01 6 33283626 33283626 G A ZBTB22 Silent p.L356L 0.24 TCGA-E2-A1IN-01 6 41774547 41774547 C G USP49 Missense_Mutation p.E59Q 0.14 tolerated(1) benign(0.009) TCGA-E2-A1IN-01 6 7405582 7405582 C G RIOK1 Silent p.L399L 0.26 TCGA-E2-A1IN-01 7 106509345 106509345 G A PIK3CG Missense_Mutation p.A447T 0.47 tolerated(0.45) benign(0.009) TCGA-E2-A1IN-01 7 114066652 114066652 C A FOXP2 Missense_Mutation p.A29D 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.903) TCGA-E2-A1IN-01 7 12271683 12271683 G A TMEM106B 3'UTR 0.38 TCGA-E2-A1IN-01 7 132192988 132192988 C G PLXNA4 Missense_Mutation p.K155N 0.34 tolerated(0.05) benign(0.011) TCGA-E2-A1IN-01 7 2687345 2687345 C T TTYH3 Intron 0.33 TCGA-E2-A1IN-01 7 4213862 4213862 G A SDK1 Silent p.R1603R 0.26 TCGA-E2-A1IN-01 7 75070302 75070302 C G POM121C Missense_Mutation p.E53Q 0.36 deleterious(0.01) benign(0.187) TCGA-E2-A1IN-01 8 119941001 119941001 C T TNFRSF11B Missense_Mutation p.E190K 0.37 tolerated(0.78) benign(0.11) TCGA-E2-A1IN-01 8 125988660 125988660 A T ZNF572 Missense_Mutation p.K50N 0.17 tolerated(0.53) benign(0.01) TCGA-E2-A1IN-01 8 126036720 126036720 C T KIAA0196 3'UTR 0.24 TCGA-E2-A1IN-01 8 133913623 133913623 G C TG Missense_Mutation p.K1153N 0.24 deleterious(0.04) benign(0.259) TCGA-E2-A1IN-01 8 143784680 143784680 C T LY6K Missense_Mutation p.S130L 0.24 tolerated(0.16) benign(0.002) TCGA-E2-A1IN-01 8 145730656 145730656 G A GPT Missense_Mutation p.E175K 0.32 tolerated(0.47) benign(0.052) TCGA-E2-A1IN-01 8 146202132 146202132 C G ZNF252P RNA 0.17 TCGA-E2-A1IN-01 8 26221289 26221289 C T PPP2R2A Silent p.I295I 0.50 TCGA-E2-A1IN-01 8 38258464 38258464 C T LETM2 Nonsense_Mutation p.Q246* 0.26 TCGA-E2-A1IN-01 8 48962528 48962528 C G UBE2V2 Missense_Mutation p.S94C 0.30 deleterious(0) benign(0.027) TCGA-E2-A1IN-01 8 53038649 53038649 A T ST18 Silent p.S906S 0.12 TCGA-E2-A1IN-01 8 79629583 79629583 C G ZC2HC1A Missense_Mutation p.S278C 0.31 tolerated(0.07) possibly_damaging(0.572) TCGA-E2-A1IN-01 8 96166542 96166542 C G PLEKHF2 Missense_Mutation p.I90M 0.17 deleterious(0) possibly_damaging(0.689) TCGA-E2-A1IN-01 9 109773294 109773294 G A ZNF462 Missense_Mutation p.E2502K 0.29 probably_damaging(0.986) TCGA-E2-A1IN-01 9 113265399 113265399 C T SVEP1 Missense_Mutation p.E468K 0.33 possibly_damaging(0.626) TCGA-E2-A1IN-01 9 132382053 132382053 G T C9orf50 Silent p.R189R 0.36 TCGA-E2-A1IN-01 9 132630515 132630515 G A USP20 Missense_Mutation p.E308K 0.39 deleterious(0.03) probably_damaging(0.982) TCGA-E2-A1IN-01 9 135513749 135513749 C T DDX31 Intron 0.35 TCGA-E2-A1IN-01 9 136270506 136270506 C A C9orf96 Missense_Mutation p.S668R 0.38 tolerated_low_confidence(0.45) possibly_damaging(0.766) TCGA-E2-A1IN-01 9 136661557 136661557 G C VAV2 Silent p.L342L 0.25 TCGA-E2-A1IN-01 9 21228028 21228028 G T IFNA17 Missense_Mutation p.P49T 0.15 tolerated(0.2) benign(0.042) TCGA-E2-A1IN-01 9 21384861 21384861 C T IFNA2 Silent p.K156K 0.30 TCGA-E2-A1IN-01 9 3937059 3937059 C T GLIS3 Missense_Mutation p.R614H 0.08 deleterious(0) probably_damaging(0.998) TCGA-E2-A1IN-01 9 71002421 71002421 G A PGM5 Missense_Mutation p.R205Q 0.28 tolerated(0.31) possibly_damaging(0.707) TCGA-E2-A1IN-01 9 74489592 74489592 C A ABHD17B Silent p.G135G 0.45 TCGA-E2-A1IN-01 9 84605770 84605770 G A SPATA31D1 Missense_Mutation p.V129I 0.17 tolerated(0.58) benign(0.002) TCGA-E2-A1IN-01 9 86900304 86900304 C G SLC28A3 Missense_Mutation p.E535Q 0.38 tolerated(0.28) benign(0.056) TCGA-E2-A1IN-01 9 91616635 91616635 C T S1PR3 Silent p.L174L 0.38 TCGA-E2-A1IN-01 9 97062379 97062379 G C ZNF169 Missense_Mutation p.R180T 0.29 tolerated(0.82) benign(0.003) TCGA-E2-A1IN-01 X 114238573 114238573 C G IL13RA2 3'UTR 0.07 TCGA-E2-A1IN-01 X 123539030 123539030 C T TENM1 Missense_Mutation p.E1748K 0.51 tolerated(0.08) benign(0.379) TCGA-E2-A1IN-01 X 133547523 133547523 G A PHF6 Missense_Mutation p.D141N 0.44 deleterious(0.02) benign(0.276) TCGA-E2-A1IN-01 X 148035163 148035163 C G AFF2 Missense_Mutation p.S484C 0.40 deleterious(0) possibly_damaging(0.65) TCGA-E2-A1IN-01 X 14915213 14915213 C G MOSPD2 Missense_Mutation p.I110M 0.26 deleterious(0.03) benign(0.247) TCGA-E2-A1IN-01 X 23397794 23397794 G C PTCHD1 Missense_Mutation p.K146N 0.20 tolerated(0.38) benign(0.022) TCGA-E2-A1IN-01 X 54586952 54586952 G A GNL3L Splice_Site p.X556_splice 0.23 TCGA-E2-A1IO-01 10 105238777 105238777 G A CALHM3 Missense_Mutation p.R5C 0.12 deleterious(0) probably_damaging(0.995) TCGA-E2-A1IO-01 11 58919766 58919766 C T FAM111A Missense_Mutation p.R209C 0.10 tolerated(0.2) benign(0) TCGA-E2-A1IO-01 11 62065069 62065069 G A SCGB1D4 Silent p.D39D 0.11 TCGA-E2-A1IO-01 13 51950260 51950260 A T INTS6 Missense_Mutation p.N551K 0.42 tolerated(0.57) benign(0.154) TCGA-E2-A1IO-01 15 64386081 64386081 A C FAM96A 5'UTR 0.45 TCGA-E2-A1IO-01 17 10415212 10415212 G T MYH1 Missense_Mutation p.Q454K 0.20 tolerated(0.25) possibly_damaging(0.674) TCGA-E2-A1IO-01 17 30690005 30690005 T C ZNF207 Splice_Site p.X224_splice 0.11 TCGA-E2-A1IO-01 17 7951752 7951752 C T ALOX15B Missense_Mutation p.R634W 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-E2-A1IO-01 1 196973889 196973889 C T CFHR5 Missense_Mutation p.R477C 0.24 tolerated(0.18) probably_damaging(0.939) TCGA-E2-A1IO-01 1 24465129 24465129 G A IL22RA1 Missense_Mutation p.T40M 0.18 tolerated(0.09) possibly_damaging(0.548) TCGA-E2-A1IO-01 21 44514780 44514780 C T U2AF1 Missense_Mutation p.R156H 0.31 deleterious(0.03) benign(0.117) TCGA-E2-A1IO-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.22 deleterious(0.04) probably_damaging(0.96) TCGA-E2-A1IO-01 5 137891585 137891585 A C HSPA9 3'UTR 0.42 TCGA-E2-A1IO-01 5 140626431 140626431 C A PCDHB15 Missense_Mutation p.P429T 0.29 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-E2-A1IO-01 5 52781027 52781028 - T FST Frame_Shift_Ins p.E309Gfs*22 0.18 TCGA-E2-A1IO-01 6 155575530 155575530 G A TIAM2 Intron 0.36 TCGA-E2-A1IO-01 8 139164616 139164616 C T FAM135B Missense_Mutation p.R701Q 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-E2-A1IU-01 10 27687621 27687621 C T PTCHD3 Missense_Mutation p.D636N 0.08 tolerated(0.18) benign(0.183) TCGA-E2-A1IU-01 11 56143720 56143720 C T OR8U1 Silent p.F207F 0.20 TCGA-E2-A1IU-01 12 124110991 124110991 C G EIF2B1 Missense_Mutation p.V178L 0.47 deleterious(0.03) benign(0.018) TCGA-E2-A1IU-01 12 53400186 53400186 C T EIF4B 5'UTR 0.22 TCGA-E2-A1IU-01 12 58177049 58177049 G A RP11-571M6.15 Nonsense_Mutation p.W78* 0.27 TCGA-E2-A1IU-01 14 93685043 93685043 G A UBR7 Missense_Mutation p.E258K 0.13 tolerated(0.14) benign(0.026) TCGA-E2-A1IU-01 16 23690550 23690550 C A PLK1 Silent p.S99S 0.10 TCGA-E2-A1IU-01 16 26147122 26147122 C A HS3ST4 Silent p.I308I 0.08 TCGA-E2-A1IU-01 18 31326555 31326555 G A ASXL3 Missense_Mutation p.R2248Q 0.15 probably_damaging(0.996) TCGA-E2-A1IU-01 18 56586060 56586060 G C ZNF532 Missense_Mutation p.G181R 0.25 tolerated(0.06) possibly_damaging(0.628) TCGA-E2-A1IU-01 18 56615311 56615311 G A ZNF532 Silent p.K906K 0.08 TCGA-E2-A1IU-01 19 1272448 1272448 C G CIRBP 3'UTR 0.12 TCGA-E2-A1IU-01 19 14208444 14208444 A T PRKACA Missense_Mutation p.W197R 0.33 deleterious(0) probably_damaging(0.982) TCGA-E2-A1IU-01 1 161967680 161967680 C T OLFML2B Nonsense_Mutation p.W470* 0.29 TCGA-E2-A1IU-01 1 204129737 204129737 C T REN Missense_Mutation p.R148H 0.12 tolerated(1) benign(0) TCGA-E2-A1IU-01 20 17950658 17950658 C T MGME1 Silent p.Y52Y 0.19 TCGA-E2-A1IU-01 20 23669592 23669592 C T CST4 Silent p.L5L 0.22 TCGA-E2-A1IU-01 22 20383855 20383855 C T AC023490.1 3'Flank 0.10 TCGA-E2-A1IU-01 2 1418203 1418203 C G TPO Missense_Mutation p.S8C 0.10 deleterious(0.02) benign(0.401) TCGA-E2-A1IU-01 5 131796262 131796262 C T C5orf56 Nonsense_Mutation p.Q33* 0.15 TCGA-E2-A1IU-01 5 156589497 156589497 C T FAM71B Silent p.E593E 0.23 TCGA-E2-A1IU-01 5 67591136 67591137 - GAGACC PIK3R1 In_Frame_Ins p.R577_D578dup 0.54 TCGA-E2-A1IU-01 6 127796935 127796935 C T SOGA3 Missense_Mutation p.G746S 0.21 tolerated(0.18) benign(0.079) TCGA-E2-A1IU-01 6 1930370 1930370 T C GMDS Silent p.K246K 0.31 TCGA-E2-A1IU-01 6 27805735 27805735 T C HIST1H2AK Missense_Mutation p.K128R 0.25 deleterious_low_confidence(0) benign(0.001) TCGA-E2-A1IU-01 8 103293607 103293607 T A UBR5 Missense_Mutation p.H1946L 0.11 deleterious(0) probably_damaging(0.921) TCGA-E2-A1IU-01 8 144945188 144945188 C G EPPK1 Missense_Mutation p.R745P 0.10 possibly_damaging(0.677) TCGA-E2-A1IU-01 8 54142387 54142387 C T OPRK1 Missense_Mutation p.V205I 0.29 tolerated(0.42) benign(0.002) TCGA-E2-A1IU-01 8 61766023 61766023 G T CHD7 Missense_Mutation p.D2247Y 0.46 benign(0.004) TCGA-E2-A1IU-01 9 109687060 109687060 G A ZNF462 Silent p.P289P 0.15 TCGA-E2-A1IU-01 9 12698600 12698600 G A TYRP1 Nonsense_Mutation p.W286* 0.19 TCGA-E2-A1IU-01 X 2407843 2407843 C T ZBED1 Silent p.P306P 0.24 TCGA-E2-A1L6-01 10 37490161 37490161 A G ANKRD30A Splice_Site p.X871_splice 0.16 TCGA-E2-A1L6-01 10 63191081 63191081 T C TMEM26 Missense_Mutation p.I94V 0.23 tolerated(0.31) benign(0.001) TCGA-E2-A1L6-01 10 75885944 75885944 G C AP3M1 Missense_Mutation p.P325A 0.18 tolerated(1) benign(0.002) TCGA-E2-A1L6-01 11 133790479 133790479 G A IGSF9B Silent p.F1047F 0.20 TCGA-E2-A1L6-01 11 67290106 67290106 C T CABP2 Missense_Mutation p.A42T 0.81 tolerated(0.43) benign(0) TCGA-E2-A1L6-01 12 120593147 120593147 C A GCN1L1 Missense_Mutation p.R1176S 0.27 probably_damaging(0.997) TCGA-E2-A1L6-01 12 56997461 56997461 C T BAZ2A Missense_Mutation p.R1023Q 0.26 deleterious(0.01) possibly_damaging(0.646) TCGA-E2-A1L6-01 14 21500170 21500170 G A TPPP2 Missense_Mutation p.M149I 0.19 tolerated(0.42) benign(0.004) TCGA-E2-A1L6-01 14 69345757 69345757 C T ACTN1 Silent p.E770E 0.16 TCGA-E2-A1L6-01 15 74836605 74836605 G A ARID3B Missense_Mutation p.V110M 0.10 tolerated(0.3) benign(0.028) TCGA-E2-A1L6-01 17 40715065 40715067 GCT - COASY In_Frame_Del p.C173del 0.25 TCGA-E2-A1L6-01 18 56018246 56018246 C T NEDD4L Silent p.H559H 0.20 TCGA-E2-A1L6-01 18 61650836 61650836 G A SERPINB8 Missense_Mutation p.A150T 0.23 tolerated(0.21) benign(0.011) TCGA-E2-A1L6-01 19 14150592 14150592 C G IL27RA Missense_Mutation p.P135R 0.33 deleterious(0.01) possibly_damaging(0.901) TCGA-E2-A1L6-01 1 168032951 168032951 C T DCAF6 Missense_Mutation p.P798L 0.14 tolerated(0.15) probably_damaging(0.991) TCGA-E2-A1L6-01 1 169677935 169677935 G T SELL Missense_Mutation p.A45E 0.21 tolerated(1) benign(0.118) TCGA-E2-A1L6-01 1 221912490 221912490 C T DUSP10 Silent p.K199K 0.10 TCGA-E2-A1L6-01 20 62664383 62664383 G C PRPF6 3'UTR 0.19 TCGA-E2-A1L6-01 2 149835435 149835435 G A KIF5C Splice_Site p.X432_splice 0.10 TCGA-E2-A1L6-01 2 201354725 201354725 G A KCTD18 3'UTR 0.19 TCGA-E2-A1L6-01 3 141934463 141934463 G A GK5 Silent p.A73A 0.19 TCGA-E2-A1L6-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.15 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A1L6-01 3 48501938 48501938 A G ATRIP Silent p.L495L 0.24 TCGA-E2-A1L6-01 5 94927224 94927224 G A ARSK Missense_Mutation p.E331K 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A1L6-01 6 10415253 10415253 C T TFAP2A 5'UTR 0.21 TCGA-E2-A1L6-01 6 39283076 39283076 G A KCNK16 Missense_Mutation p.P265S 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-E2-A1L6-01 7 47969011 47969011 G A PKD1L1 Nonsense_Mutation p.R284* 0.19 TCGA-E2-A1L6-01 8 10469694 10469696 CTG - RP1L1 In_Frame_Del p.Q638del 0.33 TCGA-E2-A1L6-01 9 66459850 66459850 T A RP11-262H14.1 RNA 0.10 TCGA-E2-A1L6-01 X 153005554 153005554 A G ABCD1 Silent p.E499E 0.18 TCGA-E2-A1L7-01 10 14909121 14909121 C G HSPA14 Missense_Mutation p.Q345E 0.35 deleterious(0) probably_damaging(0.994) TCGA-E2-A1L7-01 11 64084394 64084394 A C TRMT112 Missense_Mutation p.M106R 0.37 tolerated(0.41) benign(0) TCGA-E2-A1L7-01 12 11546260 11546260 T G PRB2 Missense_Mutation p.N251T 0.31 deleterious(0.02) unknown(0) TCGA-E2-A1L7-01 12 12974614 12974614 A C DDX47 Silent p.S132S 0.34 TCGA-E2-A1L7-01 12 13366467 13366467 A G EMP1 Missense_Mutation p.T45A 0.28 tolerated(0.1) benign(0.026) TCGA-E2-A1L7-01 12 29629199 29629199 G A OVCH1 Missense_Mutation p.P471S 0.48 tolerated(0.66) benign(0.083) TCGA-E2-A1L7-01 12 5021319 5021319 A G KCNA1 Missense_Mutation p.I259V 0.24 tolerated(0.18) benign(0.002) TCGA-E2-A1L7-01 12 52387771 52387771 A T ACVR1B Silent p.A506A 0.30 TCGA-E2-A1L7-01 12 52825420 52825420 G A KRT75 Silent p.D259D 0.31 TCGA-E2-A1L7-01 12 53946409 53946409 C G ATF7 Missense_Mutation p.E21Q 0.67 deleterious(0) probably_damaging(0.962) TCGA-E2-A1L7-01 12 54379358 54379358 C G HOXC10 Silent p.V105V 0.47 TCGA-E2-A1L7-01 12 71002944 71002944 G C PTPRB Missense_Mutation p.T295R 0.35 deleterious(0.01) possibly_damaging(0.726) TCGA-E2-A1L7-01 13 32885924 32885924 G C ZAR1L Missense_Mutation p.P47A 0.61 deleterious(0.02) benign(0.354) TCGA-E2-A1L7-01 13 92346012 92346012 G C GPC5 Missense_Mutation p.L299F 0.36 deleterious(0) probably_damaging(1) TCGA-E2-A1L7-01 14 90782992 90782992 C T NRDE2 Missense_Mutation p.D113N 0.13 tolerated(0.18) possibly_damaging(0.611) TCGA-E2-A1L7-01 15 68583547 68583547 C T FEM1B Silent p.P617P 0.12 TCGA-E2-A1L7-01 15 83502073 83502073 A G WHAMM Missense_Mutation p.I739V 0.54 tolerated(1) benign(0.002) TCGA-E2-A1L7-01 15 86284649 86284649 C T AKAP13 Missense_Mutation p.L2665F 0.24 deleterious(0) probably_damaging(0.998) TCGA-E2-A1L7-01 16 15165061 15165061 G T RRN3 Missense_Mutation p.D392E 0.50 deleterious(0.01) benign(0.178) TCGA-E2-A1L7-01 16 15878554 15878554 C T MYH11 Splice_Site p.X218_splice 0.60 TCGA-E2-A1L7-01 16 16284084 16284084 G A ABCC6 Silent p.A524A 0.58 TCGA-E2-A1L7-01 16 2284337 2284337 C T E4F1 Missense_Mutation p.S514L 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-E2-A1L7-01 16 70926361 70926361 C A HYDIN Missense_Mutation p.G3107V 0.20 probably_damaging(0.988) TCGA-E2-A1L7-01 17 15973571 15973593 CCAGGGCTCAGTTGTGCTTTGGG - NCOR1 Frame_Shift_Del p.P1467Dfs*3 0.81 TCGA-E2-A1L7-01 17 42335404 42335404 A G SLC4A1 Missense_Mutation p.F411S 0.70 deleterious(0.01) probably_damaging(1) TCGA-E2-A1L7-01 17 57290903 57290903 C A SMG8 Missense_Mutation p.L907I 0.08 deleterious(0.01) possibly_damaging(0.749) TCGA-E2-A1L7-01 17 7577518 7577518 T A TP53 Missense_Mutation p.I255F 0.43 deleterious(0) probably_damaging(0.993) TCGA-E2-A1L7-01 17 76142486 76142486 G A C17orf99 5'UTR 0.53 TCGA-E2-A1L7-01 19 15469801 15469801 T G AKAP8 Missense_Mutation p.K534Q 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-E2-A1L7-01 19 37129736 37129736 T G ZNF461 Missense_Mutation p.K504T 0.45 deleterious(0) probably_damaging(0.999) TCGA-E2-A1L7-01 19 38939431 38939431 G A RYR1 Missense_Mutation p.R367Q 0.29 probably_damaging(0.952) TCGA-E2-A1L7-01 19 41515230 41515230 A T CYP2B6 Missense_Mutation p.K251M 0.17 tolerated(0.25) possibly_damaging(0.644) TCGA-E2-A1L7-01 19 49993772 49993772 C A RPL13A Missense_Mutation p.N65K 0.50 tolerated(0.12) possibly_damaging(0.803) TCGA-E2-A1L7-01 19 56393009 56393009 G A NLRP4 3'UTR 0.33 TCGA-E2-A1L7-01 19 58232994 58232994 C T ZNF671 Missense_Mutation p.V154I 0.40 tolerated(0.48) benign(0.052) TCGA-E2-A1L7-01 1 165398021 165398021 C G RXRG Missense_Mutation p.G78R 0.33 deleterious(0) probably_damaging(0.999) TCGA-E2-A1L7-01 1 169857904 169857904 A C SCYL3 Silent p.V26V 0.28 TCGA-E2-A1L7-01 1 240635708 240635708 A G FMN2 Silent p.K1699K 0.06 TCGA-E2-A1L7-01 1 32279574 32279574 C A SPOCD1 Missense_Mutation p.S454I 0.46 deleterious(0.02) benign(0.132) TCGA-E2-A1L7-01 1 75038741 75038741 C G C1orf173 Missense_Mutation p.V885L 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-E2-A1L7-01 1 87045132 87045132 G T CLCA4 Missense_Mutation p.V740L 0.35 tolerated(0.05) benign(0.066) TCGA-E2-A1L7-01 20 50244150 50244150 G T ATP9A Missense_Mutation p.Q612K 0.11 tolerated(0.39) benign(0.105) TCGA-E2-A1L7-01 20 61542888 61542888 G A DIDO1 Missense_Mutation p.T26I 0.37 probably_damaging(0.999) TCGA-E2-A1L7-01 2 108488640 108488640 C A RGPD4 Missense_Mutation p.R1394S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-E2-A1L7-01 2 108488673 108488673 C A RGPD4 Missense_Mutation p.L1405I 0.17 tolerated(0.34) possibly_damaging(0.896) TCGA-E2-A1L7-01 2 160019974 160019974 C T TANC1 Missense_Mutation p.A288V 0.43 tolerated(0.31) benign(0.004) TCGA-E2-A1L7-01 2 1805469 1805469 T A MYT1L Missense_Mutation p.Q1090L 0.44 deleterious(0) probably_damaging(0.979) TCGA-E2-A1L7-01 2 183800077 183800077 T C NCKAP1 Missense_Mutation p.T914A 0.31 deleterious(0.03) possibly_damaging(0.79) TCGA-E2-A1L7-01 2 191362340 191362340 A C MFSD6 Silent p.G689G 0.30 TCGA-E2-A1L7-01 2 21232140 21232140 G A APOB Nonsense_Mutation p.R2534* 0.44 TCGA-E2-A1L7-01 2 216232618 216232643 AAGCCTAAGCACTGGCACAACAGTTT - FN1 Frame_Shift_Del p.K2321Wfs*8 0.23 TCGA-E2-A1L7-01 2 227907791 227907791 A G COL4A4 Splice_Site p.X1133_splice 0.23 TCGA-E2-A1L7-01 2 91805706 91805706 G T AC116050.1 Intron 0.21 TCGA-E2-A1L7-01 3 108723692 108723692 G T MORC1 Missense_Mutation p.P686Q 0.18 tolerated_low_confidence(0.42) benign(0.01) TCGA-E2-A1L7-01 3 128181838 128181838 T A DNAJB8 Missense_Mutation p.H84L 0.59 tolerated(0.08) benign(0.003) TCGA-E2-A1L7-01 3 183905745 183905745 G C ABCF3 Missense_Mutation p.E181D 0.20 tolerated(0.4) benign(0.325) TCGA-E2-A1L7-01 3 97599998 97599998 A G CRYBG3 Missense_Mutation p.I415V 0.51 tolerated(0.33) benign(0.002) TCGA-E2-A1L7-01 3 9781344 9781344 A G BRPF1 Missense_Mutation p.M421V 0.30 deleterious(0) probably_damaging(0.915) TCGA-E2-A1L7-01 4 4239632 4239632 C T TMEM128 Silent p.S119S 0.10 TCGA-E2-A1L7-01 4 62542579 62542579 G T LPHN3 Missense_Mutation p.G102V 0.34 deleterious(0) probably_damaging(1) TCGA-E2-A1L7-01 4 678308 678308 G A MFSD7 Silent p.L268L 0.45 TCGA-E2-A1L7-01 4 71347315 71347315 C A MUC7 Missense_Mutation p.P285H 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-E2-A1L7-01 4 71347316 71347316 C A MUC7 Silent p.P285P 0.12 TCGA-E2-A1L7-01 4 76489622 76489622 G A C4orf26 Missense_Mutation p.R137K 0.32 tolerated_low_confidence(1) benign(0.14) TCGA-E2-A1L7-01 5 10973489 10973489 A G CTNND2 3'UTR 0.14 TCGA-E2-A1L7-01 5 140553041 140553041 A G PCDHB7 Missense_Mutation p.S209G 0.39 deleterious_low_confidence(0.04) benign(0.002) TCGA-E2-A1L7-01 5 140554394 140554394 G A PCDHB7 Missense_Mutation p.V660M 0.16 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-E2-A1L7-01 5 150920200 150920200 G T FAT2 Silent p.G2989G 0.08 TCGA-E2-A1L7-01 5 177546577 177546577 G T N4BP3 5'UTR 0.19 TCGA-E2-A1L7-01 6 134494418 134494418 C G SGK1 Missense_Mutation p.K232N 0.32 deleterious(0.03) benign(0.116) TCGA-E2-A1L7-01 6 135787286 135787286 G A AHI1 Nonsense_Mutation p.Q139* 0.11 TCGA-E2-A1L7-01 8 124724944 124724944 T G ANXA13 Missense_Mutation p.K63T 0.20 tolerated(0.34) benign(0.005) TCGA-E2-A1L7-01 8 143746054 143746054 G A JRK RNA 0.31 TCGA-E2-A1L7-01 9 118974155 118974155 C T PAPPA Missense_Mutation p.T621I 0.18 deleterious(0.02) possibly_damaging(0.803) TCGA-E2-A1L7-01 9 118997528 118997528 T C PAPPA Missense_Mutation p.Y782H 0.77 tolerated(0.34) benign(0.403) TCGA-E2-A1L7-01 9 32418454 32418454 C T ACO1 Silent p.L201L 0.10 TCGA-E2-A1L7-01 9 35558483 35558483 G T RUSC2 Missense_Mutation p.G1087V 0.44 deleterious(0) probably_damaging(0.958) TCGA-E2-A1L7-01 9 91978680 91978680 C T SECISBP2 3'Flank 0.38 TCGA-E2-A1L7-01 X 103360019 103360019 C A ZCCHC18 3'UTR 0.24 TCGA-E2-A1L7-01 X 12903898 12903898 C A TLR7 Missense_Mutation p.L91M 0.49 deleterious(0) probably_damaging(0.988) TCGA-E2-A1L7-01 X 132351078 132351078 C A TFDP3 Missense_Mutation p.D404Y 0.29 tolerated_low_confidence(0.35) unknown(0) TCGA-E2-A1L7-01 X 132351079 132351079 C A TFDP3 Missense_Mutation p.E403D 0.29 tolerated_low_confidence(0.15) unknown(0) TCGA-E2-A1L7-01 X 74598980 74598980 A G ZDHHC15 3'UTR 0.13 TCGA-E2-A1L8-01 11 8246137 8246137 C T LMO1 3'UTR 0.29 TCGA-E2-A1L8-01 12 10134707 10134707 A C CLEC12A Missense_Mutation p.N217T 0.19 tolerated(0.16) benign(0.137) TCGA-E2-A1L8-01 12 65133264 65133264 G A GNS Silent p.L297L 0.38 TCGA-E2-A1L8-01 12 88496844 88496844 C T CEP290 Intron 0.47 TCGA-E2-A1L8-01 13 113052452 113052452 C T SPACA7 Missense_Mutation p.H81Y 0.25 tolerated(0.06) benign(0) TCGA-E2-A1L8-01 16 68844245 68844245 G A CDH1 Splice_Site p.X278_splice 0.53 TCGA-E2-A1L8-01 17 11650986 11650986 G A DNAH9 Missense_Mutation p.M2171I 0.36 benign(0.178) TCGA-E2-A1L8-01 17 29214375 29214375 C G ATAD5 Missense_Mutation p.P1415A 0.41 tolerated(0.24) benign(0.216) TCGA-E2-A1L8-01 17 56382935 56382935 T C BZRAP1 Missense_Mutation p.N1776S 0.21 deleterious(0) possibly_damaging(0.626) TCGA-E2-A1L8-01 19 35757395 35757407 CCCTGGAGGATAC - LSR Frame_Shift_Del p.P353Lfs*75 0.24 TCGA-E2-A1L8-01 19 42882495 42882495 G A MEGF8 3'UTR 0.16 TCGA-E2-A1L8-01 19 57642767 57642767 C A USP29 Silent p.I908I 0.18 TCGA-E2-A1L8-01 1 153974380 153974380 T C NUP210L Missense_Mutation p.Y1671C 0.61 tolerated(0.08) probably_damaging(0.91) TCGA-E2-A1L8-01 1 156104249 156104249 G A LMNA Missense_Mutation p.R190Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-E2-A1L8-01 1 16341930 16341930 G C HSPB7 3'UTR 0.38 TCGA-E2-A1L8-01 1 17949512 17949512 G A ARHGEF10L Missense_Mutation p.E348K 0.41 deleterious(0) possibly_damaging(0.88) TCGA-E2-A1L8-01 1 183093773 183093773 A C LAMC1 Missense_Mutation p.R803S 0.16 deleterious(0) probably_damaging(0.998) TCGA-E2-A1L8-01 1 206769064 206769064 T G EIF2D Intron 0.71 TCGA-E2-A1L8-01 1 206769083 206769083 C G EIF2D Missense_Mutation p.R498T 0.69 deleterious(0) possibly_damaging(0.845) TCGA-E2-A1L8-01 1 209803184 209803184 C T LAMB3 Missense_Mutation p.D344N 0.23 deleterious(0) probably_damaging(0.99) TCGA-E2-A1L8-01 20 35661256 35661256 T G RBL1 Missense_Mutation p.I732L 0.16 deleterious(0.04) benign(0.265) TCGA-E2-A1L8-01 2 109092242 109092242 G T GCC2 Missense_Mutation p.R999L 0.36 deleterious(0.02) benign(0.001) TCGA-E2-A1L8-01 2 207406802 207406802 A G ADAM23 Silent p.G200G 0.20 TCGA-E2-A1L8-01 2 71891548 71891548 A T DYSF Silent p.G1718G 0.20 TCGA-E2-A1L8-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.64 tolerated(0.11) possibly_damaging(0.529) TCGA-E2-A1L8-01 4 111397859 111397859 G A ENPEP Missense_Mutation p.V97I 0.24 tolerated(1) benign(0.005) TCGA-E2-A1L8-01 4 68302 68302 G A Z95704.1 3'Flank 0.25 TCGA-E2-A1L8-01 5 37169187 37169187 A T C5orf42 Missense_Mutation p.N2313K 0.43 tolerated(1) benign(0) TCGA-E2-A1L8-01 6 102376327 102376327 A C GRIK2 Silent p.I635I 0.29 TCGA-E2-A1L8-01 6 35803007 35803007 G T SRPK1 3'UTR 0.30 TCGA-E2-A1L8-01 6 42981072 42981072 A G MEA1 Silent p.R28R 0.20 TCGA-E2-A1L8-01 7 73609623 73609623 A G EIF4H Silent p.Q244Q 0.47 TCGA-E2-A1L8-01 7 76111950 76111950 C G DTX2 Missense_Mutation p.L132V 0.54 deleterious(0) benign(0.118) TCGA-E2-A1L8-01 9 125391118 125391118 G A OR1B1 Missense_Mutation p.R233C 0.24 deleterious(0.01) possibly_damaging(0.828) TCGA-E2-A1L8-01 9 2054717 2054717 G T SMARCA2 Missense_Mutation p.Q389H 0.43 benign(0.216) TCGA-E2-A1L8-01 9 95869982 95869982 C G C9orf89 Missense_Mutation p.Q12E 0.20 tolerated(0.19) possibly_damaging(0.68) TCGA-E2-A1L8-01 X 11162258 11162258 G A ARHGAP6 Missense_Mutation p.S673F 0.20 deleterious(0) probably_damaging(0.989) TCGA-E2-A1L8-01 X 147084774 147084774 G T FMR1NB Missense_Mutation p.A111S 0.07 tolerated(0.12) possibly_damaging(0.567) TCGA-E2-A1L8-01 X 49958245 49958245 C T AKAP4 Silent p.R373R 0.16 TCGA-E2-A1L9-01 10 8115705 8115706 AA - GATA3 Frame_Shift_Del p.N352Qfs*19 0.23 TCGA-E2-A1L9-01 11 102567123 102567123 T C MMP27 Missense_Mutation p.E294G 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A1L9-01 11 7439351 7439351 C A SYT9 Missense_Mutation p.D443E 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-E2-A1L9-01 12 77439990 77439990 C T E2F7 Silent p.L219L 0.45 TCGA-E2-A1L9-01 13 108882272 108882272 C T ABHD13 Missense_Mutation p.R236C 0.22 deleterious(0.01) benign(0.104) TCGA-E2-A1L9-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.64 deleterious(0) probably_damaging(0.999) TCGA-E2-A1L9-01 14 92563056 92563056 C G ATXN3 Missense_Mutation p.G51R 0.06 deleterious(0.03) possibly_damaging(0.857) TCGA-E2-A1L9-01 16 67070543 67070543 C G CBFB Missense_Mutation p.A56G 0.62 deleterious(0.01) probably_damaging(0.932) TCGA-E2-A1L9-01 16 67644817 67644830 CGCCGGGAAGGGGG - CTCF Frame_Shift_Del p.R28Pfs*17 0.77 TCGA-E2-A1L9-01 17 39323824 39323824 A G KRTAP4-3 3'UTR 0.18 TCGA-E2-A1L9-01 17 41244468 41244468 C A BRCA1 Missense_Mutation p.S1027I 0.22 tolerated(0.08) possibly_damaging(0.792) TCGA-E2-A1L9-01 17 77755934 77755934 G A CBX2 Intron 0.36 TCGA-E2-A1L9-01 19 10084883 10084883 C T COL5A3 Silent p.P1156P 0.13 TCGA-E2-A1L9-01 19 15079170 15079170 G A SLC1A6 Missense_Mutation p.R165W 0.28 deleterious(0.04) benign(0.002) TCGA-E2-A1L9-01 19 7691056 7691056 C T XAB2 Missense_Mutation p.R208H 0.20 tolerated(0.2) benign(0.002) TCGA-E2-A1L9-01 1 158261046 158261046 T C CD1C Missense_Mutation p.S62P 0.23 tolerated(0.05) benign(0.008) TCGA-E2-A1L9-01 1 180974506 180974506 G A STX6 Silent p.I43I 0.39 TCGA-E2-A1L9-01 2 152477495 152477495 C T NEB Missense_Mutation p.D3500N 0.06 probably_damaging(1) TCGA-E2-A1L9-01 2 190428522 190428522 G T SLC40A1 Missense_Mutation p.P397H 0.25 deleterious(0) probably_damaging(0.994) TCGA-E2-A1L9-01 2 25982469 25982469 G A ASXL2 Missense_Mutation p.P274L 0.13 deleterious(0) probably_damaging(1) TCGA-E2-A1L9-01 3 134851694 134851694 G A EPHB1 Missense_Mutation p.R367H 0.06 tolerated(0.22) probably_damaging(0.932) TCGA-E2-A1L9-01 3 47545880 47545880 T C ELP6 Missense_Mutation p.K88R 0.28 tolerated(0.24) benign(0.116) TCGA-E2-A1L9-01 3 52469820 52469820 G A SEMA3G Silent p.F716F 0.27 TCGA-E2-A1L9-01 4 88534248 88534248 T A DSPP Missense_Mutation p.Y304N 0.26 benign(0.008) TCGA-E2-A1L9-01 6 86332254 86332254 T C SYNCRIP Silent p.G318G 0.26 TCGA-E2-A1L9-01 7 126173165 126173165 G T GRM8 Silent p.I757I 0.34 TCGA-E2-A1L9-01 7 151932951 151932952 - GG KMT2C Frame_Shift_Ins p.R907Pfs*7 0.25 TCGA-E2-A1L9-01 7 152012230 152012230 G A KMT2C Nonsense_Mutation p.Q195* 0.16 TCGA-E2-A1L9-01 7 95761189 95761189 G A SLC25A13 Missense_Mutation p.A487V 0.18 tolerated(0.06) benign(0.18) TCGA-E2-A1L9-01 9 21166507 21166507 C A IFNA21 Missense_Mutation p.R35S 0.15 tolerated(0.05) probably_damaging(0.963) TCGA-E2-A1L9-01 X 45011033 45011033 C T CXorf36 Missense_Mutation p.C389Y 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A1LA-01 10 22618336 22618336 T G COMMD3-BMI1 Silent p.P425P 0.28 TCGA-E2-A1LA-01 10 99349999 99349999 A T C10orf62 Missense_Mutation p.K115N 0.22 deleterious(0) possibly_damaging(0.856) TCGA-E2-A1LA-01 11 118257271 118257271 G C UBE4A Missense_Mutation p.R851P 0.19 deleterious(0) possibly_damaging(0.785) TCGA-E2-A1LA-01 11 118984672 118984672 A T C2CD2L Missense_Mutation p.T534S 0.22 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LA-01 11 1268478 1268478 G A MUC5B Silent p.G3456G 0.25 TCGA-E2-A1LA-01 11 1855779 1855779 A C SYT8 5'UTR 0.16 TCGA-E2-A1LA-01 11 4594648 4594648 C G C11orf40 Missense_Mutation p.D66H 0.35 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-E2-A1LA-01 11 611058 611058 C T PHRF1 Silent p.D1593D 0.14 TCGA-E2-A1LA-01 11 64803030 64803030 G C SNX15 Missense_Mutation p.D187H 0.27 deleterious(0) probably_damaging(0.957) TCGA-E2-A1LA-01 11 65423333 65423333 A G RELA Silent p.P317P 0.10 TCGA-E2-A1LA-01 11 65620794 65620794 G C SNX32 Missense_Mutation p.K400N 0.52 tolerated(0.12) benign(0.173) TCGA-E2-A1LA-01 11 67800638 67800638 A T NDUFS8 Missense_Mutation p.E87V 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A1LA-01 11 71726410 71726410 G T NUMA1 Silent p.V713V 0.36 TCGA-E2-A1LA-01 12 101436158 101436158 T C ANO4 Missense_Mutation p.W321R 0.30 deleterious(0) probably_damaging(1) TCGA-E2-A1LA-01 12 101436159 101436159 G A ANO4 Nonsense_Mutation p.W321* 0.30 TCGA-E2-A1LA-01 12 57549874 57549874 C G LRP1 Intron 0.09 TCGA-E2-A1LA-01 12 70133517 70133517 C T RAB3IP 5'UTR 0.25 TCGA-E2-A1LA-01 12 8803117 8803117 G A MFAP5 Missense_Mutation p.H106Y 0.25 deleterious(0.02) benign(0.049) TCGA-E2-A1LA-01 13 21217606 21217606 G A IFT88 Missense_Mutation p.M574I 0.30 tolerated(0.3) benign(0.016) TCGA-E2-A1LA-01 14 100615659 100615659 G C DEGS2 Silent p.A157A 0.33 TCGA-E2-A1LA-01 14 22471495 22471495 A C TRAV18 Silent p.R16R 0.40 TCGA-E2-A1LA-01 14 28734323 28734323 A T BNIP3P1 RNA 0.25 TCGA-E2-A1LA-01 14 68042170 68042170 A C PLEKHH1 Missense_Mutation p.Y717S 0.42 deleterious(0.02) benign(0.218) TCGA-E2-A1LA-01 15 28273032 28273032 C T OCA2 Missense_Mutation p.R167H 0.42 tolerated(0.22) benign(0.004) TCGA-E2-A1LA-01 15 41145408 41145408 G T SPINT1 Missense_Mutation p.D188Y 0.33 deleterious(0.02) possibly_damaging(0.896) TCGA-E2-A1LA-01 15 41820178 41820178 G A RPAP1 Silent p.S436S 0.43 TCGA-E2-A1LA-01 15 54015063 54015063 T A WDR72 Missense_Mutation p.T66S 0.36 deleterious(0.02) possibly_damaging(0.582) TCGA-E2-A1LA-01 15 65553280 65553280 T C PARP16 Missense_Mutation p.N259S 0.43 tolerated(0.05) possibly_damaging(0.73) TCGA-E2-A1LA-01 16 67222677 67222677 G A EXOC3L1 Missense_Mutation p.A125V 0.48 tolerated(1) benign(0.002) TCGA-E2-A1LA-01 16 70428926 70428926 A G ST3GAL2 Silent p.S164S 0.45 TCGA-E2-A1LA-01 17 51902147 51902147 C G KIF2B Missense_Mutation p.P585A 0.23 tolerated(0.73) benign(0.031) TCGA-E2-A1LA-01 17 62034778 62034778 A G SCN4A Missense_Mutation p.L707P 0.11 deleterious(0) probably_damaging(1) TCGA-E2-A1LA-01 17 71232434 71232434 A G C17orf80 Silent p.P271P 0.33 TCGA-E2-A1LA-01 18 44140364 44140364 G A LOXHD1 5'Flank 0.24 TCGA-E2-A1LA-01 18 66354909 66354909 T A TMX3 Missense_Mutation p.D244V 0.30 deleterious(0) possibly_damaging(0.853) TCGA-E2-A1LA-01 19 12858838 12858838 C A ASNA1 Missense_Mutation p.H323N 0.16 tolerated(0.35) benign(0.006) TCGA-E2-A1LA-01 19 2254465 2254465 G A JSRP1 Silent p.A42A 0.29 TCGA-E2-A1LA-01 19 38933032 38933032 A G RYR1 Missense_Mutation p.Q70R 0.12 benign(0.146) TCGA-E2-A1LA-01 19 41838160 41838160 C G TGFB1 Missense_Mutation p.R296P 0.42 deleterious(0) probably_damaging(0.998) TCGA-E2-A1LA-01 19 4852082 4852082 C G PLIN3 Missense_Mutation p.G194R 0.33 deleterious(0.02) possibly_damaging(0.865) TCGA-E2-A1LA-01 19 57176314 57176314 C T ZNF835 Missense_Mutation p.A85T 0.26 tolerated(0.81) benign(0.001) TCGA-E2-A1LA-01 19 9296482 9296482 T A OR7D2 Missense_Mutation p.F9I 0.25 tolerated_low_confidence(0.95) benign(0) TCGA-E2-A1LA-01 1 158435767 158435767 G T OR10K1 Missense_Mutation p.G139V 0.24 tolerated(0.06) benign(0.169) TCGA-E2-A1LA-01 1 173933117 173933117 G C RC3H1 Missense_Mutation p.Q609E 0.07 tolerated(0.56) benign(0.029) TCGA-E2-A1LA-01 1 212216410 212216410 A T DTL Missense_Mutation p.Y43F 0.06 deleterious(0.04) benign(0.23) TCGA-E2-A1LA-01 1 213139626 213139626 G - VASH2 Intron 0.22 TCGA-E2-A1LA-01 1 27087442 27087442 G A ARID1A Silent p.E672E 0.30 TCGA-E2-A1LA-01 1 52901105 52901105 G C ZCCHC11 Missense_Mutation p.Q1399E 0.27 deleterious(0.01) benign(0.396) TCGA-E2-A1LA-01 20 139457 139457 G A DEFB127 Missense_Mutation p.G31E 0.32 deleterious(0) probably_damaging(1) TCGA-E2-A1LA-01 20 18435975 18435975 C T DZANK1 Silent p.K98K 0.11 TCGA-E2-A1LA-01 20 20033061 20033061 C G CRNKL1 Missense_Mutation p.V137L 0.19 tolerated_low_confidence(0.38) benign(0) TCGA-E2-A1LA-01 20 45702958 45702958 T C EYA2 Silent p.S215S 0.21 TCGA-E2-A1LA-01 20 57768111 57768111 T A ZNF831 Silent p.P679P 0.29 TCGA-E2-A1LA-01 21 34003275 34003275 C G SYNJ1 3'Flank 0.19 TCGA-E2-A1LA-01 22 17983949 17983950 CG - CECR2 Frame_Shift_Del p.S218Ffs*18 0.40 TCGA-E2-A1LA-01 22 31998278 31998278 T C SFI1 Missense_Mutation p.M542T 0.28 tolerated(0.15) benign(0.431) TCGA-E2-A1LA-01 22 37273879 37273879 C T NCF4 3'UTR 0.10 TCGA-E2-A1LA-01 22 42422812 42422812 C G WBP2NL Missense_Mutation p.P186R 0.27 deleterious(0) possibly_damaging(0.715) TCGA-E2-A1LA-01 2 102964405 102964405 T A IL1RL1 Missense_Mutation p.I324N 0.34 tolerated(0.14) benign(0.016) TCGA-E2-A1LA-01 2 135851198 135851198 A G RAB3GAP1 Silent p.Q99Q 0.19 TCGA-E2-A1LA-01 2 179604705 179604705 G - TTN Frame_Shift_Del p.L4419* 0.31 TCGA-E2-A1LA-01 2 215275043 215275043 T C SPAG16 3'UTR 0.23 TCGA-E2-A1LA-01 2 42994764 42994764 A C HAAO Missense_Mutation p.D251E 0.21 tolerated(0.09) benign(0.001) TCGA-E2-A1LA-01 2 43010980 43010980 C G HAAO Missense_Mutation p.V63L 0.29 tolerated(0.1) benign(0.005) TCGA-E2-A1LA-01 3 107925495 107925495 T C IFT57 Missense_Mutation p.K212E 0.12 tolerated(0.13) benign(0.196) TCGA-E2-A1LA-01 3 111312772 111312772 C A ZBED2 Missense_Mutation p.V93L 0.35 tolerated(0.07) possibly_damaging(0.902) TCGA-E2-A1LA-01 3 130110116 130110116 T G COL6A5 Silent p.T837T 0.24 TCGA-E2-A1LA-01 3 184910168 184910168 G C EHHADH Missense_Mutation p.P673R 0.07 tolerated(0.09) possibly_damaging(0.632) TCGA-E2-A1LA-01 3 197785786 197785786 C G ANKRD18DP RNA 0.44 TCGA-E2-A1LA-01 3 46875230 46875230 C T PRSS42 Intron 0.25 TCGA-E2-A1LA-01 3 47037780 47037780 T C NBEAL2 Missense_Mutation p.I724T 0.40 deleterious(0) benign(0.402) TCGA-E2-A1LA-01 3 49152539 49152539 C T USP19 Silent p.A676A 0.26 TCGA-E2-A1LA-01 3 52423503 52423503 C T DNAH1 Silent p.D3174D 0.26 TCGA-E2-A1LA-01 3 62503858 62503858 G A CADPS Nonsense_Mutation p.R787* 0.33 TCGA-E2-A1LA-01 4 106890054 106890054 C G NPNT Silent p.V565V 0.14 TCGA-E2-A1LA-01 4 108552998 108552998 C G PAPSS1 Missense_Mutation p.A509P 0.12 deleterious(0) probably_damaging(0.934) TCGA-E2-A1LA-01 4 138452231 138452231 A C PCDH18 Missense_Mutation p.C338G 0.31 deleterious(0) probably_damaging(1) TCGA-E2-A1LA-01 4 146601496 146601496 A G C4orf51 Silent p.T47T 0.38 TCGA-E2-A1LA-01 4 15690255 15690255 T A FAM200B Missense_Mutation p.L552Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LA-01 4 46305605 46305605 T G GABRA2 Missense_Mutation p.H243P 0.10 deleterious(0) probably_damaging(0.932) TCGA-E2-A1LA-01 4 69179981 69179981 G A YTHDC1 Missense_Mutation p.R674W 0.16 deleterious_low_confidence(0) unknown(0) TCGA-E2-A1LA-01 4 9922065 9922065 G C SLC2A9 Missense_Mutation p.Q316E 0.38 deleterious(0) probably_damaging(0.927) TCGA-E2-A1LA-01 5 176942194 176942194 G C DDX41 Missense_Mutation p.P213A 0.44 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LA-01 5 40771909 40771909 A G PRKAA1 Silent p.Y155Y 0.17 TCGA-E2-A1LA-01 5 72419255 72419255 A T TMEM171 Missense_Mutation p.S19C 0.34 deleterious(0) probably_damaging(0.986) TCGA-E2-A1LA-01 6 126080338 126080338 G A HEY2 Missense_Mutation p.R135Q 0.09 deleterious(0) probably_damaging(0.913) TCGA-E2-A1LA-01 6 142409522 142409522 G C NMBR Missense_Mutation p.L92V 0.37 tolerated(0.17) probably_damaging(0.999) TCGA-E2-A1LA-01 6 143091059 143091059 C A HIVEP2 Missense_Mutation p.G1606V 0.50 deleterious(0) possibly_damaging(0.484) TCGA-E2-A1LA-01 6 168312024 168312024 A C MLLT4 Missense_Mutation p.K631T 0.37 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LA-01 6 25983672 25983672 C T TRIM38 Silent p.L385L 0.06 TCGA-E2-A1LA-01 6 43322528 43322528 C G ZNF318 Missense_Mutation p.Q848H 0.05 benign(0.019) TCGA-E2-A1LA-01 6 52138070 52138070 T G MCM3 Missense_Mutation p.Y590S 0.06 deleterious(0) possibly_damaging(0.824) TCGA-E2-A1LA-01 7 103131244 103131244 C T RELN Missense_Mutation p.C3159Y 0.28 deleterious(0) possibly_damaging(0.61) TCGA-E2-A1LA-01 7 135377130 135377130 G T SLC13A4 Silent p.T387T 0.15 TCGA-E2-A1LA-01 7 150883937 150883937 C T ASB10 Missense_Mutation p.R94Q 0.32 deleterious(0.04) benign(0.015) TCGA-E2-A1LA-01 7 157364169 157364169 A G PTPRN2 Missense_Mutation p.Y934H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-E2-A1LA-01 7 37947171 37947171 C G SFRP4 Missense_Mutation p.K317N 0.12 tolerated_low_confidence(0.53) benign(0.002) TCGA-E2-A1LA-01 8 109797275 109797275 G A TMEM74 Missense_Mutation p.A18V 0.33 tolerated(0.37) benign(0.01) TCGA-E2-A1LA-01 8 55537353 55537353 A G RP1 Missense_Mutation p.K304R 0.13 tolerated(0.19) possibly_damaging(0.818) TCGA-E2-A1LA-01 9 113233652 113233652 C A SVEP1 Missense_Mutation p.R997L 0.16 probably_damaging(1) TCGA-E2-A1LA-01 9 113547204 113547204 C G MUSK Missense_Mutation p.I498M 0.31 deleterious(0.01) possibly_damaging(0.474) TCGA-E2-A1LA-01 9 131004517 131004517 C T DNM1 Missense_Mutation p.R522C 0.36 deleterious(0.05) possibly_damaging(0.682) TCGA-E2-A1LA-01 9 135173470 135173470 T A SETX Missense_Mutation p.R1926S 0.21 tolerated(0.78) benign(0.04) TCGA-E2-A1LA-01 X 118370358 118370358 C A PGRMC1 Missense_Mutation p.A11D 0.21 tolerated(0.36) benign(0.022) TCGA-E2-A1LA-01 X 118544211 118544221 GAACGGACCCC - SLC25A43 Frame_Shift_Del p.N193Rfs*11 0.11 TCGA-E2-A1LA-01 X 122754799 122754799 T A THOC2 Missense_Mutation p.I1412F 0.23 deleterious(0.04) benign(0.07) TCGA-E2-A1LA-01 X 122755245 122755254 CTTTGTCAGA - THOC2 Frame_Shift_Del p.S1324Rfs*43 0.35 TCGA-E2-A1LA-01 X 142795327 142795327 T G SPANXN2 Silent p.S117S 0.10 TCGA-E2-A1LA-01 X 151996249 151996249 G C CETN2 3'UTR 0.36 TCGA-E2-A1LA-01 X 154159488 154159494 CTGTGGC - F8 Frame_Shift_Del p.R857Sfs*18 0.20 TCGA-E2-A1LA-01 X 1743208 1743208 C G ASMT Silent p.V97V 0.31 TCGA-E2-A1LA-01 X 54578044 54578044 G A GNL3L Missense_Mutation p.D303N 0.23 deleterious(0.01) probably_damaging(1) TCGA-E2-A1LA-01 X 84563184 84563184 C A POF1B Silent p.L332L 0.23 TCGA-E2-A1LB-01 10 103563692 103563692 T A MGEA5 Missense_Mutation p.D279V 0.31 deleterious(0) probably_damaging(1) TCGA-E2-A1LB-01 10 118100287 118100287 G C CCDC172 Missense_Mutation p.L69F 0.26 deleterious(0.02) possibly_damaging(0.73) TCGA-E2-A1LB-01 10 135025332 135025332 G C KNDC1 Missense_Mutation p.K1402N 0.50 deleterious(0.01) benign(0.254) TCGA-E2-A1LB-01 11 1016406 1016406 G A MUC6 Missense_Mutation p.S2132F 0.29 benign(0.153) TCGA-E2-A1LB-01 11 103907556 103907556 G A DDI1 Silent p.L2L 0.33 TCGA-E2-A1LB-01 11 63974872 63974872 C T FERMT3 Silent p.I12I 0.43 TCGA-E2-A1LB-01 12 117387426 117387426 C T FBXW8 Missense_Mutation p.R198C 0.22 deleterious(0) probably_damaging(0.992) TCGA-E2-A1LB-01 12 119943012 119943012 G A CCDC60 Missense_Mutation p.E263K 0.14 deleterious(0.01) probably_damaging(0.946) TCGA-E2-A1LB-01 12 53227620 53227620 T C KRT79 Missense_Mutation p.E142G 0.22 deleterious(0.01) possibly_damaging(0.812) TCGA-E2-A1LB-01 12 8998092 8998092 A T A2ML1 Nonsense_Mutation p.K511* 0.32 TCGA-E2-A1LB-01 13 114154394 114154394 A T TMCO3 Missense_Mutation p.Q249L 0.28 tolerated(0.19) benign(0.082) TCGA-E2-A1LB-01 15 43701236 43701236 T C TP53BP1 Missense_Mutation p.Y1820C 0.42 deleterious(0) probably_damaging(1) TCGA-E2-A1LB-01 15 59523941 59523941 C A MYO1E Missense_Mutation p.G157V 0.37 deleterious(0) probably_damaging(1) TCGA-E2-A1LB-01 15 76189341 76189341 A G UBE2Q2 Silent p.Q345Q 0.14 TCGA-E2-A1LB-01 16 84888433 84888433 G A CRISPLD2 Missense_Mutation p.R236Q 0.35 tolerated(0.09) benign(0.016) TCGA-E2-A1LB-01 17 27069047 27069047 C G NEK8 3'UTR 0.14 TCGA-E2-A1LB-01 17 27580688 27580688 G C CRYBA1 Missense_Mutation p.E130Q 0.08 deleterious(0.01) possibly_damaging(0.775) TCGA-E2-A1LB-01 17 38182494 38182494 C G MED24 Missense_Mutation p.D634H 0.03 deleterious(0) possibly_damaging(0.855) TCGA-E2-A1LB-01 17 61557814 61557814 G A ACE Missense_Mutation p.V258I 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-E2-A1LB-01 17 78318644 78318644 A G RNF213 Missense_Mutation p.Y2170C 0.38 probably_damaging(0.999) TCGA-E2-A1LB-01 19 13247176 13247176 C G NACC1 Silent p.L359L 0.50 TCGA-E2-A1LB-01 19 15083545 15083545 G A SLC1A6 Silent p.L60L 0.38 TCGA-E2-A1LB-01 19 35741388 35741388 C T LSR Missense_Mutation p.P142S 0.53 tolerated(0.09) probably_damaging(0.998) TCGA-E2-A1LB-01 19 43244584 43244584 C G PSG3 5'UTR 0.19 TCGA-E2-A1LB-01 19 53453802 53453802 C A ZNF816 Missense_Mutation p.R409I 0.33 tolerated(0.17) benign(0.035) TCGA-E2-A1LB-01 19 9076601 9076601 T G MUC16 Silent p.T3615T 0.25 TCGA-E2-A1LB-01 1 158985687 158985687 G C IFI16 Missense_Mutation p.K97N 0.26 tolerated(0.08) benign(0.01) TCGA-E2-A1LB-01 1 204425124 204425124 G A PIK3C2B Silent p.C601C 0.24 TCGA-E2-A1LB-01 1 204425125 204425125 C G PIK3C2B Missense_Mutation p.C601S 0.22 tolerated(0.11) benign(0.002) TCGA-E2-A1LB-01 1 36297703 36297703 G A AGO4 Missense_Mutation p.E388K 0.33 deleterious(0.01) benign(0.356) TCGA-E2-A1LB-01 22 38509509 38509509 C T PLA2G6 Silent p.K729K 0.21 TCGA-E2-A1LB-01 22 41553334 41553334 C G EP300 Nonsense_Mutation p.Y1141* 0.06 TCGA-E2-A1LB-01 2 114000264 114000264 C T PAX8 Intron 0.30 TCGA-E2-A1LB-01 2 141806595 141806595 C T LRP1B Silent p.Q583Q 0.28 TCGA-E2-A1LB-01 2 201682951 201682951 C T BZW1 Silent p.L250L 0.38 TCGA-E2-A1LB-01 2 70905967 70905967 C T ADD2 Missense_Mutation p.A418T 0.29 tolerated(0.2) benign(0.003) TCGA-E2-A1LB-01 2 89976205 89976205 C G IGKV2D-30 Missense_Mutation p.Q26E 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-E2-A1LB-01 3 160148495 160148497 AGC - SMC4 In_Frame_Del p.A970del 0.28 TCGA-E2-A1LB-01 3 160148940 160148941 AT - SMC4 Frame_Shift_Del p.I1021Rfs*6 0.18 TCGA-E2-A1LB-01 3 38647465 38647465 C A SCN5A Nonsense_Mutation p.E439* 0.32 TCGA-E2-A1LB-01 4 101396227 101396227 G C EMCN Nonsense_Mutation p.S76* 0.23 TCGA-E2-A1LB-01 4 88723821 88723821 C T IBSP Missense_Mutation p.P41S 0.34 tolerated(0.28) probably_damaging(0.993) TCGA-E2-A1LB-01 5 129520402 129520402 C T CHSY3 Nonsense_Mutation p.Q523* 0.23 TCGA-E2-A1LB-01 5 142680112 142680112 G A NR3C1 Missense_Mutation p.T563M 0.29 deleterious(0) probably_damaging(0.975) TCGA-E2-A1LB-01 5 89814775 89814775 G C LYSMD3 Nonsense_Mutation p.S261* 0.33 TCGA-E2-A1LB-01 6 106634262 106634262 C A ATG5 3'UTR 0.40 TCGA-E2-A1LB-01 6 152631933 152631933 C T SYNE1 Missense_Mutation p.V5596M 0.14 possibly_damaging(0.833) TCGA-E2-A1LB-01 6 89793494 89793494 A C PNRC1 Missense_Mutation p.K188T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A1LB-01 7 6194664 6194664 G A USP42 Missense_Mutation p.R1160Q 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-E2-A1LB-01 7 64167655 64167655 G T ZNF107 Nonsense_Mutation p.E325* 0.25 TCGA-E2-A1LB-01 7 64167657 64167657 G A ZNF107 Silent p.E325E 0.30 TCGA-E2-A1LB-01 8 40389561 40389561 G A ZMAT4 3'UTR 0.41 TCGA-E2-A1LB-01 8 40389567 40389567 G A ZMAT4 3'UTR 0.55 TCGA-E2-A1LB-01 9 133729582 133729582 G A ABL1 Missense_Mutation p.D90N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-E2-A1LB-01 9 138714464 138714464 C A CAMSAP1 Silent p.G681G 0.24 TCGA-E2-A1LB-01 X 107316026 107316026 G C VSIG1 Missense_Mutation p.E214Q 0.32 tolerated(0.19) benign(0.271) TCGA-E2-A1LB-01 X 47926259 47926259 C T ZNF630 Splice_Site p.X5_splice 0.36 TCGA-E2-A1LG-01 10 102676827 102676827 G C FAM178A Missense_Mutation p.E229Q 0.33 tolerated(0.11) possibly_damaging(0.908) TCGA-E2-A1LG-01 10 5948419 5948419 C G FBXO18 Missense_Mutation p.P244A 0.47 deleterious(0.01) probably_damaging(1) TCGA-E2-A1LG-01 10 69676149 69676149 G C SIRT1 Missense_Mutation p.Q681H 0.77 tolerated_low_confidence(0.63) benign(0.001) TCGA-E2-A1LG-01 11 117267896 117267896 C G CEP164 Missense_Mutation p.S1123C 0.09 deleterious(0) probably_damaging(0.992) TCGA-E2-A1LG-01 11 117651335 117651335 G A DSCAML1 Silent p.N139N 0.58 TCGA-E2-A1LG-01 11 119148506 119148506 G A CBL Silent p.L349L 0.12 TCGA-E2-A1LG-01 11 119155748 119155748 G C CBL Missense_Mutation p.D501H 0.23 deleterious(0) probably_damaging(0.961) TCGA-E2-A1LG-01 11 119155954 119155954 G C CBL Missense_Mutation p.R540P 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-E2-A1LG-01 11 123601456 123601456 C T ZNF202 Silent p.Q47Q 0.19 TCGA-E2-A1LG-01 11 1256618 1256618 C G MUC5B Missense_Mutation p.S952C 0.18 unknown(0) TCGA-E2-A1LG-01 11 1862416 1862416 C T TNNI2 Silent p.V144V 0.15 TCGA-E2-A1LG-01 11 2432657 2432657 C T TRPM5 Missense_Mutation p.E903K 0.31 tolerated(0.4) possibly_damaging(0.801) TCGA-E2-A1LG-01 11 35463039 35463039 G C PAMR1 Missense_Mutation p.I358M 0.29 tolerated(0.2) possibly_damaging(0.715) TCGA-E2-A1LG-01 11 46897025 46897025 C G LRP4 Missense_Mutation p.D1303H 0.29 tolerated(0.26) benign(0.076) TCGA-E2-A1LG-01 11 58604868 58604868 C G GLYATL2 Missense_Mutation p.E63D 0.25 tolerated(0.08) probably_damaging(0.932) TCGA-E2-A1LG-01 11 62343377 62343377 G C TUT1 Missense_Mutation p.S643C 0.24 deleterious(0.03) probably_damaging(0.922) TCGA-E2-A1LG-01 11 64898960 64898960 G C SYVN1 Silent p.L213L 0.31 TCGA-E2-A1LG-01 11 65389721 65389721 G T PCNXL3 Missense_Mutation p.Q747H 0.28 tolerated(0.09) benign(0.006) TCGA-E2-A1LG-01 11 66191853 66191853 G C NPAS4 Missense_Mutation p.E498Q 0.09 tolerated_low_confidence(0.06) benign(0.146) TCGA-E2-A1LG-01 11 93148236 93148236 G C CCDC67 Missense_Mutation p.E532Q 0.23 tolerated(0.4) benign(0.249) TCGA-E2-A1LG-01 12 102117560 102117560 C G CHPT1 Missense_Mutation p.L334V 0.30 deleterious(0.01) probably_damaging(0.947) TCGA-E2-A1LG-01 12 123355458 123355458 G C VPS37B Missense_Mutation p.Q88E 0.04 deleterious(0) possibly_damaging(0.56) TCGA-E2-A1LG-01 12 18499579 18499579 G C PIK3C2G Missense_Mutation p.L478F 0.05 tolerated(0.79) benign(0.009) TCGA-E2-A1LG-01 12 2997127 2997127 G A RHNO1 Silent p.Q73Q 0.07 TCGA-E2-A1LG-01 12 30862761 30862761 G C CAPRIN2 3'UTR 0.33 TCGA-E2-A1LG-01 12 31632879 31632879 C T DENND5B Missense_Mutation p.R183K 0.22 tolerated(0.64) benign(0.011) TCGA-E2-A1LG-01 12 40668510 40668510 G A LRRK2 Silent p.Q594Q 0.05 TCGA-E2-A1LG-01 12 4446208 4446208 A C C12orf5 Missense_Mutation p.Q25P 0.28 deleterious(0) probably_damaging(0.989) TCGA-E2-A1LG-01 12 49994319 49994319 G C FAM186B Missense_Mutation p.F368L 0.20 tolerated(0.37) benign(0.027) TCGA-E2-A1LG-01 12 56112976 56112976 G A BLOC1S1 Missense_Mutation p.G107E 0.20 tolerated(0.18) benign(0.173) TCGA-E2-A1LG-01 12 6472887 6472887 G A SCNN1A Intron 0.08 TCGA-E2-A1LG-01 12 71523195 71523195 C T TSPAN8 Splice_Site p.X193_splice 0.17 TCGA-E2-A1LG-01 13 103446142 103446142 C T KDELC1 Missense_Mutation p.E135K 0.15 deleterious(0) possibly_damaging(0.899) TCGA-E2-A1LG-01 13 111117840 111117840 G T COL4A2 Missense_Mutation p.G622V 0.19 benign(0.049) TCGA-E2-A1LG-01 13 111156284 111156284 G A COL4A2 Missense_Mutation p.R1410Q 0.15 possibly_damaging(0.553) TCGA-E2-A1LG-01 13 20579263 20579263 G C ZMYM2 Missense_Mutation p.E395Q 0.12 tolerated(0.23) probably_damaging(0.959) TCGA-E2-A1LG-01 13 21436902 21436902 C T XPO4 Missense_Mutation p.E91K 0.12 tolerated(0.58) benign(0.026) TCGA-E2-A1LG-01 13 22070300 22070300 C G MICU2 Splice_Site p.X312_splice 0.11 TCGA-E2-A1LG-01 13 28001286 28001286 C G GTF3A Missense_Mutation p.L87V 0.11 deleterious(0) possibly_damaging(0.838) TCGA-E2-A1LG-01 13 53008983 53008983 C G VPS36 Missense_Mutation p.R129T 0.08 deleterious(0.01) benign(0.242) TCGA-E2-A1LG-01 13 96529964 96529964 C T UGGT2 Silent p.V1125V 0.12 TCGA-E2-A1LG-01 14 22631482 22631484 ATG - TRAV29DV5 In_Frame_Del p.D27del 0.35 TCGA-E2-A1LG-01 14 39796100 39796100 C T CTAGE5 Nonsense_Mutation p.Q574* 0.17 TCGA-E2-A1LG-01 14 51239789 51239789 G C NIN Missense_Mutation p.L231V 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-E2-A1LG-01 14 55510415 55510415 C G SOCS4 Nonsense_Mutation p.S219* 0.22 TCGA-E2-A1LG-01 14 65482433 65482433 G C FNTB Missense_Mutation p.D125H 0.26 tolerated(0.09) benign(0.053) TCGA-E2-A1LG-01 14 75601569 75601569 G A TMED10 3'UTR 0.11 TCGA-E2-A1LG-01 14 94088627 94088627 C T UNC79 Missense_Mutation p.P1506L 0.42 deleterious_low_confidence(0) benign(0.009) TCGA-E2-A1LG-01 14 95556760 95556760 T C DICER1 3'UTR 0.36 TCGA-E2-A1LG-01 15 28357142 28357142 C G HERC2 Missense_Mutation p.E4758Q 0.27 probably_damaging(1) TCGA-E2-A1LG-01 15 43622033 43622033 C T LCMT2 Missense_Mutation p.E219K 0.36 deleterious(0) probably_damaging(1) TCGA-E2-A1LG-01 15 45353269 45353269 T A SORD Missense_Mutation p.D90E 0.15 deleterious(0.02) probably_damaging(0.97) TCGA-E2-A1LG-01 15 54435237 54435237 G T UNC13C Missense_Mutation p.K1002N 0.24 deleterious_low_confidence(0.04) benign(0.209) TCGA-E2-A1LG-01 15 89401865 89401865 G A ACAN Missense_Mutation p.E2017K 0.34 deleterious(0.03) possibly_damaging(0.857) TCGA-E2-A1LG-01 16 1827839 1827839 G C SPSB3 Missense_Mutation p.F210L 0.07 deleterious(0.04) possibly_damaging(0.631) TCGA-E2-A1LG-01 16 57921825 57921825 G T CNGB1 Silent p.L1132L 0.29 TCGA-E2-A1LG-01 16 67338408 67338408 C T KCTD19 Missense_Mutation p.E123K 0.34 tolerated(0.07) benign(0.21) TCGA-E2-A1LG-01 16 84199429 84199429 G A DNAAF1 Missense_Mutation p.E302K 0.32 deleterious(0) probably_damaging(0.985) TCGA-E2-A1LG-01 17 15995259 15995259 C G NCOR1 Missense_Mutation p.Q978H 0.06 probably_damaging(0.993) TCGA-E2-A1LG-01 17 17106133 17106133 C T PLD6 Missense_Mutation p.R236K 0.24 tolerated_low_confidence(0.35) benign(0) TCGA-E2-A1LG-01 17 37667820 37667820 G C CDK12 Missense_Mutation p.R902P 0.27 probably_damaging(0.999) TCGA-E2-A1LG-01 17 40370196 40370196 G C STAT5B Missense_Mutation p.S381C 0.16 deleterious(0.01) benign(0.194) TCGA-E2-A1LG-01 17 42232258 42232258 G A C17orf53 Silent p.E533E 0.19 TCGA-E2-A1LG-01 17 42397234 42397234 G A SLC25A39 3'UTR 0.56 TCGA-E2-A1LG-01 17 4463874 4463874 G A GGT6 5'UTR 0.14 TCGA-E2-A1LG-01 17 60345093 60345093 G T TBC1D3P2 RNA 0.21 TCGA-E2-A1LG-01 17 72942845 72942845 G C OTOP3 Missense_Mutation p.E299Q 0.08 deleterious(0) probably_damaging(1) TCGA-E2-A1LG-01 17 74473024 74473024 G A RHBDF2 Missense_Mutation p.R364W 0.11 deleterious(0) possibly_damaging(0.847) TCGA-E2-A1LG-01 17 7577515 7577517 TGA - TP53 In_Frame_Del p.I255del 0.71 TCGA-E2-A1LG-01 17 76989659 76989659 C A CANT1 Silent p.V393V 0.15 TCGA-E2-A1LG-01 17 78348381 78348381 G C RNF213 Missense_Mutation p.A4356P 0.26 possibly_damaging(0.878) TCGA-E2-A1LG-01 17 80919028 80919028 G A B3GNTL1 Silent p.Y210Y 0.12 TCGA-E2-A1LG-01 18 331727 331727 G A COLEC12 Silent p.L668L 0.32 TCGA-E2-A1LG-01 18 47093904 47093904 C T LIPG Silent p.L124L 0.05 TCGA-E2-A1LG-01 19 11347170 11347170 C G DOCK6 Silent p.L748L 0.06 TCGA-E2-A1LG-01 19 16204559 16204559 G A TPM4 Silent p.L256L 0.09 TCGA-E2-A1LG-01 19 17535896 17535896 C G MVB12A 3'UTR 0.17 TCGA-E2-A1LG-01 19 19654870 19654870 C T CILP2 Nonsense_Mutation p.Q506* 0.22 TCGA-E2-A1LG-01 19 34838943 34838943 G A KIAA0355 Missense_Mutation p.E895K 0.12 deleterious_low_confidence(0.01) benign(0.094) TCGA-E2-A1LG-01 19 34984225 34984225 G A WTIP Missense_Mutation p.E299K 0.19 deleterious(0.01) possibly_damaging(0.859) TCGA-E2-A1LG-01 19 38948694 38948694 C T RYR1 Silent p.I643I 0.27 TCGA-E2-A1LG-01 19 4157217 4157217 C A CREB3L3 Missense_Mutation p.P128T 0.09 tolerated(0.05) benign(0.058) TCGA-E2-A1LG-01 19 43421981 43421981 G C PSG6 5'UTR 0.20 TCGA-E2-A1LG-01 19 44680181 44680181 G C ZNF226 Missense_Mutation p.E256Q 0.06 deleterious(0.04) benign(0.121) TCGA-E2-A1LG-01 19 52091157 52091157 C T ZNF175 Missense_Mutation p.H525Y 0.06 deleterious(0) probably_damaging(0.964) TCGA-E2-A1LG-01 19 56109162 56109162 G A FIZ1 Missense_Mutation p.H24Y 0.21 deleterious(0) unknown(0) TCGA-E2-A1LG-01 19 56171941 56171941 C T U2AF2 Missense_Mutation p.P97L 0.28 tolerated(0.09) benign(0.019) TCGA-E2-A1LG-01 19 7516034 7516034 G C ARHGEF18 Splice_Site p.X392_splice 0.06 TCGA-E2-A1LG-01 19 9062192 9062192 C G MUC16 Missense_Mutation p.L8418F 0.05 unknown(0) TCGA-E2-A1LG-01 19 9764079 9764079 G A ZNF562 Missense_Mutation p.S276F 0.03 deleterious(0) benign(0.284) TCGA-E2-A1LG-01 1 108299921 108299921 C G VAV3 Missense_Mutation p.E350Q 0.24 deleterious(0.01) probably_damaging(0.933) TCGA-E2-A1LG-01 1 11736161 11736161 G A MAD2L2 Silent p.L123L 0.14 TCGA-E2-A1LG-01 1 145606305 145606305 C G POLR3C Missense_Mutation p.K216N 0.08 deleterious(0.02) probably_damaging(1) TCGA-E2-A1LG-01 1 150234948 150234948 G A CA14 Missense_Mutation p.D142N 0.17 deleterious(0) possibly_damaging(0.551) TCGA-E2-A1LG-01 1 150234973 150234973 C A CA14 Missense_Mutation p.A150D 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A1LG-01 1 152276492 152276492 C T FLG Missense_Mutation p.E3624K 0.14 unknown(0) TCGA-E2-A1LG-01 1 153661754 153661754 C T NPR1 Silent p.F885F 0.21 TCGA-E2-A1LG-01 1 155716706 155716706 T C GON4L 3'Flank 0.67 TCGA-E2-A1LG-01 1 1565047 1565047 C G MIB2 Missense_Mutation p.I979M 0.64 deleterious(0.01) probably_damaging(1) TCGA-E2-A1LG-01 1 165513481 165513481 C G LRRC52 5'UTR 0.23 TCGA-E2-A1LG-01 1 17312979 17312979 G A ATP13A2 Silent p.F1128F 0.15 TCGA-E2-A1LG-01 1 17634697 17634697 G A PADI4 5'UTR 0.36 TCGA-E2-A1LG-01 1 177899016 177899016 G A SEC16B Missense_Mutation p.R1054C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A1LG-01 1 179086512 179086512 C G ABL2 Missense_Mutation p.E455Q 0.16 deleterious(0) probably_damaging(1) TCGA-E2-A1LG-01 1 183187608 183187608 G C LAMC2 Missense_Mutation p.G163A 0.22 deleterious(0) probably_damaging(1) TCGA-E2-A1LG-01 1 186313181 186313181 C T TPR Silent p.E1153E 0.04 TCGA-E2-A1LG-01 1 206579816 206579816 C G SRGAP2 Missense_Mutation p.F327L 0.19 tolerated(0.09) probably_damaging(0.949) TCGA-E2-A1LG-01 1 214706030 214706030 G C PTPN14 Intron 0.38 TCGA-E2-A1LG-01 1 225334860 225334860 G C DNAH14 Missense_Mutation p.D695H 0.20 deleterious(0) probably_damaging(0.986) TCGA-E2-A1LG-01 1 227921783 227921783 G C SNAP47 5'Flank 0.21 TCGA-E2-A1LG-01 1 228548289 228548289 C T OBSCN Intron 0.12 TCGA-E2-A1LG-01 1 247024249 247024249 C G AHCTF1 Missense_Mutation p.D1371H 0.03 deleterious(0.02) possibly_damaging(0.808) TCGA-E2-A1LG-01 1 249106488 249106488 C T SH3BP5L Missense_Mutation p.E265K 0.14 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LG-01 1 26212229 26212229 G C STMN1 Silent p.L170L 0.49 TCGA-E2-A1LG-01 1 31478856 31478856 G A PUM1 Silent p.I188I 0.36 TCGA-E2-A1LG-01 1 39494490 39494490 C G NDUFS5 Missense_Mutation p.R32G 0.09 deleterious(0.03) benign(0.271) TCGA-E2-A1LG-01 1 42914274 42914274 C G ZMYND12 Missense_Mutation p.Q96H 0.32 deleterious(0) benign(0.104) TCGA-E2-A1LG-01 20 239786 239786 G T DEFB132 Nonsense_Mutation p.E43* 0.32 TCGA-E2-A1LG-01 20 34130641 34130641 A G ERGIC3 Silent p.Q106Q 0.24 TCGA-E2-A1LG-01 20 60905656 60905656 G A LAMA5 Silent p.F1289F 0.29 TCGA-E2-A1LG-01 21 16339475 16339475 G A NRIP1 Nonsense_Mutation p.Q347* 0.09 TCGA-E2-A1LG-01 21 45744783 45744783 G C PFKL Missense_Mutation p.Q620H 0.04 tolerated(0.05) probably_damaging(0.999) TCGA-E2-A1LG-01 21 46032257 46032257 C T KRTAP10-8 Silent p.S80S 0.82 TCGA-E2-A1LG-01 22 18072384 18072384 G C SLC25A18 Missense_Mutation p.K253N 0.05 tolerated(0.35) possibly_damaging(0.622) TCGA-E2-A1LG-01 22 18893927 18893927 G A DGCR6 Missense_Mutation p.G14S 0.23 tolerated(0.46) benign(0.094) TCGA-E2-A1LG-01 22 21363462 21363462 C T AC002472.1 5'Flank 0.24 TCGA-E2-A1LG-01 22 21363818 21363818 C G AC002472.1 5'Flank 0.12 TCGA-E2-A1LG-01 22 24984229 24984229 C G FAM211B Silent p.S125S 0.09 TCGA-E2-A1LG-01 22 36690231 36690231 C T MYH9 Silent p.K1248K 0.27 TCGA-E2-A1LG-01 22 42159248 42159248 C T MEI1 Missense_Mutation p.R731C 0.21 tolerated(0.84) benign(0.002) TCGA-E2-A1LG-01 22 42159295 42159295 C G MEI1 Missense_Mutation p.I746M 0.21 tolerated(0.06) benign(0.165) TCGA-E2-A1LG-01 22 42896662 42896662 C A SERHL RNA 0.62 TCGA-E2-A1LG-01 22 50316007 50316007 G A CRELD2 Missense_Mutation p.V219M 0.23 tolerated_low_confidence(0.08) benign(0) TCGA-E2-A1LG-01 2 102448266 102448266 G A MAP4K4 Missense_Mutation p.E198K 0.25 deleterious_low_confidence(0) unknown(0) TCGA-E2-A1LG-01 2 102450904 102450904 G C MAP4K4 Missense_Mutation p.E225Q 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-E2-A1LG-01 2 109546677 109546677 G A EDAR Nonsense_Mutation p.R25* 0.55 TCGA-E2-A1LG-01 2 154800925 154800925 C G GALNT13 5'UTR 0.26 TCGA-E2-A1LG-01 2 161143552 161143552 C G RBMS1 Missense_Mutation p.Q228H 0.05 deleterious(0.03) probably_damaging(0.956) TCGA-E2-A1LG-01 2 190728571 190728571 G C PMS1 Missense_Mutation p.K653N 0.27 tolerated(0.09) benign(0.347) TCGA-E2-A1LG-01 2 197521749 197521749 C T CCDC150 Silent p.L155L 0.18 TCGA-E2-A1LG-01 2 197594544 197594544 G A CCDC150 Missense_Mutation p.E927K 0.06 deleterious(0) probably_damaging(0.973) TCGA-E2-A1LG-01 2 207169562 207169562 G T ZDBF2 Nonsense_Mutation p.E104* 0.31 TCGA-E2-A1LG-01 2 209025769 209025769 C T CRYGA Missense_Mutation p.R95K 0.25 tolerated(0.31) benign(0.023) TCGA-E2-A1LG-01 2 25611078 25611078 G A DTNB Silent p.F576F 0.20 TCGA-E2-A1LG-01 2 26257474 26257474 C T RAB10 5'UTR 0.17 TCGA-E2-A1LG-01 2 29294614 29294614 C G C2orf71 Silent p.L838L 0.13 TCGA-E2-A1LG-01 2 99189336 99189336 G C INPP4A Missense_Mutation p.Q864H 0.23 deleterious(0) possibly_damaging(0.866) TCGA-E2-A1LG-01 3 112538665 112538665 G A CD200R1L Silent p.L253L 0.17 TCGA-E2-A1LG-01 3 118945872 118945872 G C B4GALT4 Silent p.L90L 0.26 TCGA-E2-A1LG-01 3 121410200 121410200 G C GOLGB1 Missense_Mutation p.Q2671E 0.04 benign(0.028) TCGA-E2-A1LG-01 3 133377973 133377973 C G TOPBP1 Missense_Mutation p.E36Q 0.05 deleterious(0.02) benign(0.122) TCGA-E2-A1LG-01 3 137484310 137484310 C T SOX14 Silent p.G228G 0.43 TCGA-E2-A1LG-01 3 179472637 179472637 C A USP13 Nonsense_Mutation p.S639* 0.13 TCGA-E2-A1LG-01 3 194407852 194407852 G C FAM43A Missense_Mutation p.K99N 0.11 tolerated(0.2) probably_damaging(0.997) TCGA-E2-A1LG-01 3 32032288 32032288 G A ZNF860 Missense_Mutation p.E573K 0.19 tolerated(1) benign(0.002) TCGA-E2-A1LG-01 3 38805068 38805068 C G SCN10A Missense_Mutation p.D207H 0.22 deleterious(0.01) possibly_damaging(0.841) TCGA-E2-A1LG-01 3 39555004 39555004 C T MOBP 3'UTR 0.15 TCGA-E2-A1LG-01 3 44611611 44611611 G C ZKSCAN7 Missense_Mutation p.D337H 0.11 deleterious(0.04) benign(0.02) TCGA-E2-A1LG-01 3 46063195 46063195 C T XCR1 Missense_Mutation p.C82Y 0.19 deleterious(0.05) possibly_damaging(0.732) TCGA-E2-A1LG-01 3 52584826 52584826 C T PBRM1 Missense_Mutation p.M1432I 0.19 tolerated(0.4) benign(0.01) TCGA-E2-A1LG-01 3 9027568 9027568 C G SRGAP3 Missense_Mutation p.E979Q 0.13 deleterious(0.05) probably_damaging(0.994) TCGA-E2-A1LG-01 3 96963195 96963195 C G EPHA6 Intron 0.24 TCGA-E2-A1LG-01 3 97983636 97983636 C T OR5H6 Missense_Mutation p.L170F 0.23 tolerated(0.06) benign(0.429) TCGA-E2-A1LG-01 4 134072178 134072178 C T PCDH10 Missense_Mutation p.P295S 0.38 tolerated(0.79) benign(0.011) TCGA-E2-A1LG-01 4 185038159 185038159 G A ENPP6 Silent p.V235V 0.25 TCGA-E2-A1LG-01 4 56744156 56744156 G C EXOC1 Missense_Mutation p.R383T 0.08 deleterious(0.01) possibly_damaging(0.719) TCGA-E2-A1LG-01 5 102433074 102433074 C G GIN1 Missense_Mutation p.D318H 0.07 deleterious(0.04) benign(0.345) TCGA-E2-A1LG-01 5 130791627 130791627 T G RAPGEF6 Missense_Mutation p.Q981H 0.20 deleterious(0.04) benign(0.026) TCGA-E2-A1LG-01 5 132034940 132034940 C G KIF3A Missense_Mutation p.E658D 0.23 tolerated(0.44) benign(0.122) TCGA-E2-A1LG-01 5 13762836 13762836 G C DNAH5 Missense_Mutation p.L3426V 0.17 possibly_damaging(0.694) TCGA-E2-A1LG-01 5 149775971 149775971 C T TCOF1 Missense_Mutation p.P1303L 0.37 deleterious(0) possibly_damaging(0.622) TCGA-E2-A1LG-01 5 149825182 149825182 G A RPS14 Silent p.I126I 0.19 TCGA-E2-A1LG-01 5 150310714 150310714 G A ZNF300P1 RNA 0.12 TCGA-E2-A1LG-01 5 150696504 150696504 G A SLC36A2 Silent p.F442F 0.22 TCGA-E2-A1LG-01 5 176002162 176002162 C G CDHR2 Silent p.L191L 0.18 TCGA-E2-A1LG-01 5 36066903 36066903 C G UGT3A2 5'UTR 0.18 TCGA-E2-A1LG-01 5 71492844 71492844 C G MAP1B Missense_Mutation p.S1221C 0.17 probably_damaging(0.998) TCGA-E2-A1LG-01 5 77004118 77004118 C G TBCA Missense_Mutation p.K36N 0.03 deleterious(0.03) benign(0.423) TCGA-E2-A1LG-01 5 96215756 96215756 C G ERAP2 Missense_Mutation p.Q123E 0.12 tolerated(1) benign(0.011) TCGA-E2-A1LG-01 6 10961623 10961623 G C SYCP2L Missense_Mutation p.E781Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-E2-A1LG-01 6 109885419 109885419 C T AK9 Silent p.E833E 0.06 TCGA-E2-A1LG-01 6 128221997 128221997 G C THEMIS Missense_Mutation p.I27M 0.34 deleterious(0) possibly_damaging(0.771) TCGA-E2-A1LG-01 6 144033228 144033228 G C PHACTR2 Missense_Mutation p.R41T 0.07 deleterious(0) probably_damaging(0.996) TCGA-E2-A1LG-01 6 27782245 27782245 C A HIST1H2AJ Nonsense_Mutation p.E92* 0.18 TCGA-E2-A1LG-01 6 30673284 30673284 G C MDC1 Missense_Mutation p.Q1226E 0.04 tolerated(0.12) benign(0) TCGA-E2-A1LG-01 6 30879010 30879010 C G GTF2H4 Silent p.L212L 0.05 TCGA-E2-A1LG-01 6 35810309 35810309 C T SRPK1 Intron 0.16 TCGA-E2-A1LG-01 6 52146918 52146918 C T MCM3 Silent p.K197K 0.19 TCGA-E2-A1LG-01 6 90661581 90661581 C A BACH2 Missense_Mutation p.V82F 0.43 deleterious(0) probably_damaging(1) TCGA-E2-A1LG-01 7 107566805 107566805 C T LAMB1 Splice_Site p.X1630_splice 0.20 TCGA-E2-A1LG-01 7 129098109 129098109 C G STRIP2 Missense_Mutation p.F364L 0.08 tolerated(0.45) benign(0.146) TCGA-E2-A1LG-01 7 138432275 138432275 G A ATP6V0A4 Silent p.F405F 0.05 TCGA-E2-A1LG-01 7 142962324 142962324 C T GSTK1 Missense_Mutation p.R175C 0.21 tolerated(0.06) benign(0.001) TCGA-E2-A1LG-01 7 148801832 148801832 C T ZNF425 Silent p.Q377Q 0.11 TCGA-E2-A1LG-01 7 148802280 148802280 C G ZNF425 Missense_Mutation p.R228T 0.24 deleterious(0.02) benign(0.205) TCGA-E2-A1LG-01 7 151921673 151921673 C T KMT2C Nonsense_Mutation p.W1002* 0.15 TCGA-E2-A1LG-01 7 35284610 35284610 G T TBX20 Missense_Mutation p.S202Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LG-01 7 98991734 98991734 G A ARPC1B Missense_Mutation p.D358N 0.20 tolerated(0.15) probably_damaging(0.993) TCGA-E2-A1LG-01 8 101083735 101083735 C A RGS22 Missense_Mutation p.W152C 0.25 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LG-01 8 107773358 107773358 G C ABRA Silent p.L351L 0.29 TCGA-E2-A1LG-01 8 145101812 145101812 C T SPATC1 Silent p.L577L 0.38 TCGA-E2-A1LG-01 8 2088660 2088660 C T MYOM2 Missense_Mutation p.S1272L 0.15 deleterious(0.03) benign(0.097) TCGA-E2-A1LG-01 8 27887897 27887897 G A NUGGC Silent p.L649L 0.63 TCGA-E2-A1LG-01 9 105767684 105767684 G C CYLC2 Silent p.S257S 0.13 TCGA-E2-A1LG-01 9 117108251 117108251 C G AKNA Missense_Mutation p.E1185Q 0.19 tolerated(0.13) possibly_damaging(0.876) TCGA-E2-A1LG-01 9 130127600 130127600 G A GARNL3 Missense_Mutation p.D706N 0.06 tolerated(0.07) probably_damaging(1) TCGA-E2-A1LG-01 9 130286102 130286102 C T FAM129B Missense_Mutation p.A149T 0.22 tolerated(0.57) benign(0.004) TCGA-E2-A1LG-01 9 133924412 133924412 G A LAMC3 Missense_Mutation p.E509K 0.18 deleterious(0.05) benign(0.014) TCGA-E2-A1LG-01 9 18639298 18639298 C G ADAMTSL1 Silent p.L241L 0.12 TCGA-E2-A1LG-01 9 19116288 19116288 C G PLIN2 Missense_Mutation p.K424N 0.14 tolerated(0.15) benign(0.001) TCGA-E2-A1LG-01 9 35749738 35749738 G C RGP1 5'UTR 0.22 TCGA-E2-A1LG-01 9 35751661 35751661 G A RGP1 Silent p.G224G 0.24 TCGA-E2-A1LG-01 9 75773624 75773624 C T ANXA1 Missense_Mutation p.S27L 0.12 tolerated(0.15) benign(0.002) TCGA-E2-A1LG-01 9 8518119 8518119 G A PTPRD Silent p.V424V 0.26 TCGA-E2-A1LG-01 X 110035316 110035316 G A CHRDL1 Missense_Mutation p.H32Y 0.38 tolerated(1) benign(0.001) TCGA-E2-A1LG-01 X 15474054 15474054 C G PIR Missense_Mutation p.E133Q 0.05 deleterious(0) possibly_damaging(0.804) TCGA-E2-A1LG-01 X 47058455 47058455 C G UBA1 Silent p.A42A 0.04 TCGA-E2-A1LG-01 X 57515254 57515254 C T FAAH2 Silent p.L496L 0.07 TCGA-E2-A1LG-01 X 67431962 67431962 G C OPHN1 Silent p.L230L 0.25 TCGA-E2-A1LG-01 X 69606486 69606486 G T KIF4A Nonsense_Mutation p.E685* 0.26 TCGA-E2-A1LG-01 X 79932427 79932427 C T BRWD3 Missense_Mutation p.R1697Q 0.04 tolerated_low_confidence(0.23) unknown(0) TCGA-E2-A1LH-01 10 104142107 104142107 G A GBF1 3'UTR 0.15 TCGA-E2-A1LH-01 10 27037541 27037541 G A ABI1 Silent p.F495F 0.13 TCGA-E2-A1LH-01 10 50122049 50122049 T A LRRC18 Missense_Mutation p.D51V 0.13 deleterious(0) benign(0.213) TCGA-E2-A1LH-01 10 7658059 7658059 A T ITIH5 Silent p.V275V 0.14 TCGA-E2-A1LH-01 10 99437633 99437633 C G AVPI1 Missense_Mutation p.R146T 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-E2-A1LH-01 11 103106473 103106473 C A DYNC2H1 Missense_Mutation p.L3214I 0.11 benign(0.386) TCGA-E2-A1LH-01 11 111680367 111680367 C G ALG9 Missense_Mutation p.R407T 0.17 tolerated(0.05) benign(0.161) TCGA-E2-A1LH-01 11 122774895 122774895 G A C11orf63 Missense_Mutation p.G203S 0.37 tolerated(0.31) benign(0.024) TCGA-E2-A1LH-01 11 123886801 123886801 C T OR10G4 Nonsense_Mutation p.Q174* 0.10 TCGA-E2-A1LH-01 11 125447449 125447449 T C EI24 Missense_Mutation p.V100A 0.17 tolerated(0.07) benign(0.002) TCGA-E2-A1LH-01 11 126147394 126147394 C G FOXRED1 Missense_Mutation p.P424R 0.33 tolerated(0.26) benign(0.133) TCGA-E2-A1LH-01 11 16424266 16424266 T C SOX6 Intron 0.25 TCGA-E2-A1LH-01 11 26702758 26702758 C A SLC5A12 Missense_Mutation p.G440V 0.13 tolerated(0.68) benign(0.211) TCGA-E2-A1LH-01 11 57373904 57373904 C T SERPING1 Missense_Mutation p.P305S 0.10 tolerated(0.78) benign(0.161) TCGA-E2-A1LH-01 11 63069806 63069806 C G SLC22A10 Missense_Mutation p.A359G 0.12 tolerated(0.15) benign(0.049) TCGA-E2-A1LH-01 11 6977210 6977210 T C ZNF215 Silent p.C334C 0.35 TCGA-E2-A1LH-01 11 71259660 71259660 C T KRTAP5-9 5'UTR 0.16 TCGA-E2-A1LH-01 11 73627677 73627680 ATTT - PAAF1 Frame_Shift_Del p.Y304Sfs*4 0.26 TCGA-E2-A1LH-01 11 73687912 73687912 T A UCP2 Missense_Mutation p.Y163F 0.33 deleterious(0) benign(0.26) TCGA-E2-A1LH-01 11 74574068 74574068 T C XRRA1 Splice_Site p.X327_splice 0.21 TCGA-E2-A1LH-01 12 112587555 112587555 G T TRAFD1 Missense_Mutation p.D387Y 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-E2-A1LH-01 12 122958130 122958130 C T ZCCHC8 Missense_Mutation p.E680K 0.19 deleterious(0) probably_damaging(0.99) TCGA-E2-A1LH-01 12 132589046 132589046 G C EP400NL Intron 0.25 TCGA-E2-A1LH-01 12 21422554 21422554 C T SLCO1A2 Silent p.K647K 0.12 TCGA-E2-A1LH-01 12 27521193 27521193 A C ARNTL2 Splice_Site p.X11_splice 0.10 TCGA-E2-A1LH-01 12 32832297 32832297 C G DNM1L 5'UTR 0.11 TCGA-E2-A1LH-01 12 68549246 68549246 G A IFNG Missense_Mutation p.R130C 0.28 deleterious(0) probably_damaging(0.998) TCGA-E2-A1LH-01 12 77191265 77191265 C G ZDHHC17 Missense_Mutation p.R49G 0.09 tolerated(0.05) benign(0.1) TCGA-E2-A1LH-01 12 8813465 8813465 G A MFAP5 Nonsense_Mutation p.R30* 0.07 TCGA-E2-A1LH-01 12 96359545 96359548 TTGC - AMDHD1 Frame_Shift_Del p.C341Ffs*12 0.22 TCGA-E2-A1LH-01 12 99007970 99007970 G A IKBIP Missense_Mutation p.T149M 0.10 deleterious(0) benign(0.013) TCGA-E2-A1LH-01 13 111293891 111293893 GCT - CARS2 In_Frame_Del p.A563del 0.24 TCGA-E2-A1LH-01 13 23912087 23912087 G C SACS Silent p.T1976T 0.14 TCGA-E2-A1LH-01 13 36167538 36167538 T G NBEA Missense_Mutation p.V2417G 0.10 deleterious(0) probably_damaging(0.984) TCGA-E2-A1LH-01 13 48830433 48830433 G C ITM2B Missense_Mutation p.E123Q 0.08 tolerated(0.18) benign(0.005) TCGA-E2-A1LH-01 13 51948545 51948545 C G INTS6 Missense_Mutation p.V635L 0.12 tolerated(0.11) probably_damaging(0.978) TCGA-E2-A1LH-01 14 102496209 102496209 G T DYNC1H1 Missense_Mutation p.K3232N 0.10 probably_damaging(0.997) TCGA-E2-A1LH-01 14 102915977 102915977 G C TECPR2 Silent p.T1029T 0.20 TCGA-E2-A1LH-01 14 33015163 33015163 C G AKAP6 Missense_Mutation p.S435C 0.15 deleterious(0) possibly_damaging(0.728) TCGA-E2-A1LH-01 14 33015164 33015164 C A AKAP6 Silent p.S435S 0.15 TCGA-E2-A1LH-01 14 35032351 35032351 C A SNX6 Missense_Mutation p.A412S 0.19 tolerated(0.61) benign(0.055) TCGA-E2-A1LH-01 14 44976057 44976057 G C FSCB Missense_Mutation p.A45G 0.09 tolerated(0.25) benign(0.443) TCGA-E2-A1LH-01 14 77697973 77697973 C G TMEM63C Missense_Mutation p.I131M 0.11 tolerated(0.22) benign(0.213) TCGA-E2-A1LH-01 15 100589120 100589120 G T ADAMTS17 Missense_Mutation p.Q845K 0.08 tolerated(0.95) benign(0.013) TCGA-E2-A1LH-01 15 42982040 42982045 TGACTC - STARD9 In_Frame_Del p.T2756_L2757del 0.17 TCGA-E2-A1LH-01 15 43813754 43813766 CCTCAGGGGGCTT - MAP1A Frame_Shift_Del p.G30Sfs*76 0.11 TCGA-E2-A1LH-01 15 43813899 43813909 ACGGCACTTGG - MAP1A Frame_Shift_Del p.R77Pfs*3 0.16 TCGA-E2-A1LH-01 15 48551430 48551430 G A SLC12A1 Missense_Mutation p.M692I 0.23 tolerated(0.05) possibly_damaging(0.593) TCGA-E2-A1LH-01 15 50515175 50515175 G A SLC27A2 Missense_Mutation p.R329H 0.17 tolerated(0.06) benign(0.047) TCGA-E2-A1LH-01 15 63132851 63132851 C G TLN2 3'UTR 0.25 TCGA-E2-A1LH-01 15 64970559 64970559 C G ZNF609 Missense_Mutation p.S1216C 0.16 deleterious(0) probably_damaging(0.983) TCGA-E2-A1LH-01 15 65398675 65398675 T C UBAP1L 5'UTR 0.23 TCGA-E2-A1LH-01 15 65782632 65782663 CTAGCTCTAGACAAATATAAAAGGCAAAATTA TG DPP8 Splice_Site p.X255_splice 0.17 TCGA-E2-A1LH-01 15 72641433 72641433 C T HEXA Missense_Mutation p.D325N 0.11 tolerated(0.23) benign(0.322) TCGA-E2-A1LH-01 16 15797866 15797866 T C MYH11 Silent p.G1974G 0.15 TCGA-E2-A1LH-01 16 56536325 56536325 G C BBS2 Silent p.L328L 0.06 TCGA-E2-A1LH-01 16 61689466 61689466 A T CDH8 Missense_Mutation p.V605D 0.13 deleterious(0.03) possibly_damaging(0.767) TCGA-E2-A1LH-01 16 69401045 69401045 C G TERF2 Missense_Mutation p.K293N 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-E2-A1LH-01 16 69681063 69681063 C T NFAT5 Missense_Mutation p.A129V 0.14 benign(0.026) TCGA-E2-A1LH-01 16 70595601 70595601 G A SF3B3 Silent p.L734L 0.19 TCGA-E2-A1LH-01 17 16320895 16320895 C T TRPV2 5'UTR 0.31 TCGA-E2-A1LH-01 17 18219046 18219046 G C SMCR8 5'UTR 0.24 TCGA-E2-A1LH-01 17 28766018 28766018 G C CPD Missense_Mutation p.R718T 0.18 tolerated(0.74) benign(0.014) TCGA-E2-A1LH-01 17 43195728 43195728 A T PLCD3 Missense_Mutation p.S349T 0.33 deleterious(0) probably_damaging(0.951) TCGA-E2-A1LH-01 17 4925884 4925884 C A KIF1C Missense_Mutation p.H836Q 0.41 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-E2-A1LH-01 17 56276953 56276953 G C EPX Missense_Mutation p.R445S 0.18 tolerated(0.16) benign(0.02) TCGA-E2-A1LH-01 17 7578535 7578535 T G TP53 Missense_Mutation p.K132T 0.24 deleterious(0) probably_damaging(1) TCGA-E2-A1LH-01 18 43219743 43219743 G A SLC14A2 Silent p.Q292Q 0.08 TCGA-E2-A1LH-01 18 44174399 44174399 G A LOXHD1 Nonsense_Mutation p.Q389* 0.08 TCGA-E2-A1LH-01 18 56247679 56247679 T G ALPK2 Missense_Mutation p.N110T 0.29 deleterious(0.04) possibly_damaging(0.518) TCGA-E2-A1LH-01 18 9396385 9396385 G C TWSG1 Missense_Mutation p.D111H 0.10 tolerated(0.08) benign(0.23) TCGA-E2-A1LH-01 19 17785507 17785507 C T UNC13A Silent p.A37A 0.12 TCGA-E2-A1LH-01 19 21990455 21990455 A T ZNF43 Missense_Mutation p.V795E 0.29 deleterious(0.01) benign(0.091) TCGA-E2-A1LH-01 19 36237374 36237374 G A PSENEN Missense_Mutation p.R39Q 0.18 tolerated(0.16) benign(0.059) TCGA-E2-A1LH-01 19 36297349 36297349 A G PRODH2 Silent p.Y404Y 0.20 TCGA-E2-A1LH-01 19 44982147 44982147 A G ZNF180 Missense_Mutation p.V184A 0.21 tolerated(0.13) benign(0.03) TCGA-E2-A1LH-01 19 4534066 4534066 A G PLIN5 Silent p.A7A 0.15 TCGA-E2-A1LH-01 19 51561881 51561881 C T KLK13 Missense_Mutation p.E187K 0.12 tolerated(0.56) benign(0.022) TCGA-E2-A1LH-01 19 5604645 5604645 T C SAFB2 Missense_Mutation p.E503G 0.12 deleterious(0.02) possibly_damaging(0.599) TCGA-E2-A1LH-01 19 56162749 56162749 C A CCDC106 Silent p.S138S 0.23 TCGA-E2-A1LH-01 19 6333478 6333478 A T ACER1 Missense_Mutation p.Y29N 0.43 deleterious(0) benign(0.376) TCGA-E2-A1LH-01 19 6981164 6981164 T A EMR4P RNA 0.35 TCGA-E2-A1LH-01 19 7707892 7707892 G C STXBP2 Missense_Mutation p.Q328H 0.22 tolerated(0.17) benign(0.003) TCGA-E2-A1LH-01 19 890221 890221 G T MED16 Missense_Mutation p.L65M 0.10 deleterious(0.04) possibly_damaging(0.665) TCGA-E2-A1LH-01 1 110559298 110559298 G T AHCYL1 Missense_Mutation p.R303S 0.16 deleterious(0.02) possibly_damaging(0.523) TCGA-E2-A1LH-01 1 118166072 118166072 C G FAM46C Missense_Mutation p.F194L 0.06 tolerated(0.1) benign(0.089) TCGA-E2-A1LH-01 1 145368663 145368663 G C NBPF10 Missense_Mutation p.M3547I 0.10 benign(0.031) TCGA-E2-A1LH-01 1 154962805 154962805 T G FLAD1 Intron 0.09 TCGA-E2-A1LH-01 1 158152042 158152042 C A CD1D Silent p.T183T 0.14 TCGA-E2-A1LH-01 1 160523640 160523640 A T CD84 Intron 0.09 TCGA-E2-A1LH-01 1 160523827 160523827 G T CD84 Nonsense_Mutation p.Y166* 0.40 TCGA-E2-A1LH-01 1 160922453 160922453 A G ITLN2 Silent p.P50P 0.17 TCGA-E2-A1LH-01 1 167095074 167095074 G C DUSP27 Missense_Mutation p.V236L 0.12 deleterious(0) probably_damaging(0.98) TCGA-E2-A1LH-01 1 168510133 168510133 G A XCL2 3'UTR 0.18 TCGA-E2-A1LH-01 1 169833610 169833610 C T SCYL3 Silent p.L285L 0.16 TCGA-E2-A1LH-01 1 170695427 170695427 G A PRRX1 Missense_Mutation p.A162T 0.13 tolerated(0.07) probably_damaging(0.972) TCGA-E2-A1LH-01 1 171560940 171560940 G C PRRC2C Missense_Mutation p.G2803A 0.08 probably_damaging(0.992) TCGA-E2-A1LH-01 1 198721729 198721729 G A PTPRC Missense_Mutation p.D1113N 0.07 deleterious(0) probably_damaging(0.948) TCGA-E2-A1LH-01 1 201969099 201969099 G C RNPEP Missense_Mutation p.G387A 0.09 deleterious(0.03) probably_damaging(1) TCGA-E2-A1LH-01 1 216270515 216270515 C G USH2A Missense_Mutation p.L1556F 0.07 probably_damaging(1) TCGA-E2-A1LH-01 1 235907399 235907399 C G LYST Missense_Mutation p.K2677N 0.14 tolerated(0.1) benign(0.08) TCGA-E2-A1LH-01 1 240969478 240969478 C T RGS7 Missense_Mutation p.V411M 0.10 tolerated(0.6) probably_damaging(0.921) TCGA-E2-A1LH-01 1 24407909 24407909 C T MYOM3 Missense_Mutation p.R773H 0.25 deleterious(0.04) benign(0.172) TCGA-E2-A1LH-01 1 248113016 248113016 C A OR2L8 Missense_Mutation p.P286H 0.38 deleterious(0) possibly_damaging(0.831) TCGA-E2-A1LH-01 1 27226625 27226625 G C GPATCH3 Missense_Mutation p.C103W 0.21 deleterious(0) probably_damaging(0.996) TCGA-E2-A1LH-01 1 40777373 40777373 T G COL9A2 Silent p.P144P 0.12 TCGA-E2-A1LH-01 1 43868911 43868911 C T SZT2 Missense_Mutation p.R31C 0.22 deleterious(0) probably_damaging(0.992) TCGA-E2-A1LH-01 1 53153348 53153348 C G COA7 3'UTR 0.15 TCGA-E2-A1LH-01 1 55152117 55152117 G C MROH7 Missense_Mutation p.V903L 0.18 tolerated(0.45) probably_damaging(0.991) TCGA-E2-A1LH-01 1 55555340 55555340 C T USP24 Missense_Mutation p.V2210I 0.13 tolerated(0.36) benign(0.008) TCGA-E2-A1LH-01 1 62503648 62503648 G T INADL Splice_Site p.X1320_splice 0.24 TCGA-E2-A1LH-01 1 62503649 62503649 A C INADL Missense_Mutation p.R1320S 0.23 deleterious(0.02) possibly_damaging(0.752) TCGA-E2-A1LH-01 1 67206389 67206389 G T SGIP1 Missense_Mutation p.Q761H 0.14 tolerated(0.17) benign(0.026) TCGA-E2-A1LH-01 1 67206390 67206390 A T SGIP1 Nonsense_Mutation p.K762* 0.13 TCGA-E2-A1LH-01 1 89656943 89656943 C T GBP4 Splice_Site p.X306_splice 0.17 TCGA-E2-A1LH-01 1 94344630 94344630 T G DNTTIP2 Intron 0.13 TCGA-E2-A1LH-01 20 24937952 24937952 G C CST7 Missense_Mutation p.V34L 0.12 tolerated(0.11) benign(0.002) TCGA-E2-A1LH-01 20 34240553 34240553 C T RBM12 Missense_Mutation p.G898S 0.21 deleterious(0.02) unknown(0) TCGA-E2-A1LH-01 20 43386365 43386365 C G RIMS4 Missense_Mutation p.D134H 0.12 deleterious_low_confidence(0) possibly_damaging(0.797) TCGA-E2-A1LH-01 20 46295213 46295213 G A SULF2 Silent p.V532V 0.17 TCGA-E2-A1LH-01 21 30357213 30357213 G C LTN1 Missense_Mutation p.Q172E 0.26 deleterious(0) probably_damaging(0.994) TCGA-E2-A1LH-01 21 36088930 36088930 T C CLIC6 3'UTR 0.14 TCGA-E2-A1LH-01 21 37763938 37763938 G T CHAF1B Nonsense_Mutation p.E117* 0.07 TCGA-E2-A1LH-01 21 38600045 38600045 C G DSCR3 Missense_Mutation p.D241H 0.08 deleterious(0) probably_damaging(0.995) TCGA-E2-A1LH-01 21 41459120 41459120 A C DSCAM Silent p.P1315P 0.14 TCGA-E2-A1LH-01 22 26224839 26224839 C A MYO18B Silent p.A961A 0.08 TCGA-E2-A1LH-01 22 26272182 26272182 C G MYO18B Missense_Mutation p.I1369M 0.37 deleterious(0) probably_damaging(0.99) TCGA-E2-A1LH-01 22 38016265 38016265 G A GGA1 Silent p.S108S 0.54 TCGA-E2-A1LH-01 22 43275089 43275089 C G PACSIN2 Missense_Mutation p.Q331H 0.31 tolerated(0.13) benign(0.009) TCGA-E2-A1LH-01 2 11338833 11338833 T - ROCK2 Frame_Shift_Del p.N993Ifs*4 0.12 TCGA-E2-A1LH-01 2 118582195 118582195 G C DDX18 Missense_Mutation p.D373H 0.12 deleterious(0) benign(0.442) TCGA-E2-A1LH-01 2 179477137 179477137 G C TTN Silent p.V16705V 0.17 TCGA-E2-A1LH-01 2 197590781 197590781 G C CCDC150 Missense_Mutation p.E838D 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-E2-A1LH-01 2 201764124 201764124 C T NIF3L1 Silent p.V294V 0.10 TCGA-E2-A1LH-01 2 201853098 201853098 G C FAM126B Missense_Mutation p.S293C 0.06 deleterious(0.02) benign(0.006) TCGA-E2-A1LH-01 2 207170457 207170457 G T ZDBF2 Missense_Mutation p.R402I 0.10 deleterious(0) possibly_damaging(0.695) TCGA-E2-A1LH-01 2 207833062 207833062 G A CPO Missense_Mutation p.D285N 0.06 tolerated(0.17) benign(0.378) TCGA-E2-A1LH-01 2 228846465 228846465 T A SPHKAP Missense_Mutation p.S1691C 0.13 deleterious(0) probably_damaging(0.994) TCGA-E2-A1LH-01 2 231079807 231079807 C T SP110 Silent p.L58L 0.11 TCGA-E2-A1LH-01 2 234622270 234622270 C A UGT1A5 Silent p.V211V 0.15 TCGA-E2-A1LH-01 2 235950185 235950185 G A SH3BP4 Missense_Mutation p.D258N 0.17 tolerated(0.64) benign(0.002) TCGA-E2-A1LH-01 2 238249553 238249553 T C COL6A3 Missense_Mutation p.H2669R 0.07 unknown(0) TCGA-E2-A1LH-01 2 239344596 239344596 A G ASB1 Missense_Mutation p.T146A 0.17 deleterious(0.01) possibly_damaging(0.851) TCGA-E2-A1LH-01 2 39193270 39193270 A C ARHGEF33 Missense_Mutation p.K823Q 0.13 deleterious(0) possibly_damaging(0.895) TCGA-E2-A1LH-01 2 65492395 65492395 C A ACTR2 Intron 0.23 TCGA-E2-A1LH-01 2 74466568 74466568 T G SLC4A5 Missense_Mutation p.K738T 0.11 tolerated(0.19) possibly_damaging(0.513) TCGA-E2-A1LH-01 2 96949043 96949043 A G SNRNP200 Missense_Mutation p.L1604P 0.13 deleterious(0) possibly_damaging(0.594) TCGA-E2-A1LH-01 2 97858608 97858608 A T ANKRD36 Missense_Mutation p.K787N 0.15 tolerated_low_confidence(0.17) benign(0.221) TCGA-E2-A1LH-01 3 10128882 10128882 C G FANCD2 Missense_Mutation p.L1134V 0.21 deleterious(0) probably_damaging(0.933) TCGA-E2-A1LH-01 3 112969403 112969403 C T BOC Silent p.N33N 0.10 TCGA-E2-A1LH-01 3 113119482 113119482 G T WDR52 Missense_Mutation p.P462T 0.38 deleterious(0) possibly_damaging(0.842) TCGA-E2-A1LH-01 3 119209519 119209519 C G POGLUT1 Missense_Mutation p.P307A 0.14 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LH-01 3 122437394 122437394 G C PARP14 Missense_Mutation p.D1466H 0.10 tolerated(0.13) benign(0.012) TCGA-E2-A1LH-01 3 124729397 124729397 T G HEG1 Missense_Mutation p.N987H 0.11 tolerated(0.11) benign(0.139) TCGA-E2-A1LH-01 3 142122826 142122826 T C XRN1 Missense_Mutation p.K630R 0.09 tolerated(0.28) benign(0.001) TCGA-E2-A1LH-01 3 15515753 15515753 C G COLQ Silent p.L194L 0.36 TCGA-E2-A1LH-01 3 164905805 164905805 C G SLITRK3 Silent p.S938S 0.17 TCGA-E2-A1LH-01 3 167184946 167184946 A G SERPINI2 Silent p.H125H 0.11 TCGA-E2-A1LH-01 3 170201192 170201192 C T SLC7A14 Silent p.S342S 0.12 TCGA-E2-A1LH-01 3 186389561 186389561 G C HRG Missense_Mutation p.E181Q 0.23 tolerated(0.05) possibly_damaging(0.557) TCGA-E2-A1LH-01 3 193156267 193156267 A C ATP13A4 Missense_Mutation p.I890S 0.21 deleterious(0) possibly_damaging(0.901) TCGA-E2-A1LH-01 3 3080621 3080621 C A CNTN4 Silent p.P699P 0.23 TCGA-E2-A1LH-01 3 38951681 38951681 T A SCN11A Missense_Mutation p.Y326F 0.10 tolerated(0.43) benign(0.007) TCGA-E2-A1LH-01 3 41757046 41757046 A C ULK4 Missense_Mutation p.S824A 0.16 tolerated(1) benign(0) TCGA-E2-A1LH-01 3 47164912 47164912 G C SETD2 Missense_Mutation p.S405C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E2-A1LH-01 3 47452898 47452898 C G PTPN23 Missense_Mutation p.H1204D 0.27 benign(0.355) TCGA-E2-A1LH-01 3 51429876 51429876 C A RBM15B Missense_Mutation p.S349Y 0.12 deleterious(0) probably_damaging(0.961) TCGA-E2-A1LH-01 3 87309061 87309061 G T POU1F1 Missense_Mutation p.H313N 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.457) TCGA-E2-A1LH-01 3 97311568 97311568 C A EPHA6 Silent p.P833P 0.13 TCGA-E2-A1LH-01 3 98189042 98189042 G C OR5K1 Missense_Mutation p.V208L 0.20 deleterious(0.03) benign(0.101) TCGA-E2-A1LH-01 4 103459076 103459076 C G NFKB1 Missense_Mutation p.S74C 0.18 deleterious(0) probably_damaging(0.974) TCGA-E2-A1LH-01 4 134073838 134073838 C G PCDH10 Missense_Mutation p.T848S 0.14 tolerated(0.46) benign(0.031) TCGA-E2-A1LH-01 4 146617761 146617761 C T C4orf51 Missense_Mutation p.T95I 0.09 deleterious(0.04) benign(0.031) TCGA-E2-A1LH-01 4 82126045 82126045 C G PRKG2 Missense_Mutation p.E53Q 0.09 tolerated(0.24) benign(0.008) TCGA-E2-A1LH-01 5 1210685 1210685 A G SLC6A19 Missense_Mutation p.E157G 0.21 tolerated(0.38) benign(0.002) TCGA-E2-A1LH-01 5 125759303 125759303 C G GRAMD3 Intron 0.17 TCGA-E2-A1LH-01 5 138643429 138643429 A G MATR3 Missense_Mutation p.S109G 0.08 deleterious(0.03) benign(0.037) TCGA-E2-A1LH-01 5 140348549 140348556 GCTACACT - PCDHAC2 Frame_Shift_Del p.Y734Vfs*29 0.24 TCGA-E2-A1LH-01 5 147469120 147469120 G C SPINK5 Missense_Mutation p.D180H 0.17 tolerated(0.08) possibly_damaging(0.845) TCGA-E2-A1LH-01 5 36268305 36268305 A T RANBP3L Missense_Mutation p.H111Q 0.13 tolerated(0.07) benign(0.003) TCGA-E2-A1LH-01 5 66432390 66432390 G A MAST4 Splice_Site p.X798_splice 0.15 TCGA-E2-A1LH-01 5 68595848 68595848 T G CCDC125 Silent p.S269S 0.30 TCGA-E2-A1LH-01 5 92923685 92923685 G A NR2F1 Missense_Mutation p.G176R 0.39 tolerated(0.08) benign(0.03) TCGA-E2-A1LH-01 6 133100532 133100532 C G SLC18B1 Missense_Mutation p.G224R 0.14 tolerated(0.23) benign(0.003) TCGA-E2-A1LH-01 6 160211644 160211648 GGGTT CG MRPL18 In_Frame_Del p.G9_L10delinsR 0.16 TCGA-E2-A1LH-01 6 165711463 165711463 C A C6orf118 Intron 0.26 TCGA-E2-A1LH-01 6 168191674 168191674 G C C6orf123 Missense_Mutation p.P28R 0.29 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-E2-A1LH-01 6 24418713 24418713 G C MRS2 Missense_Mutation p.L338F 0.10 tolerated(0.08) possibly_damaging(0.84) TCGA-E2-A1LH-01 6 28219418 28219418 C A ZKSCAN4 Missense_Mutation p.R114L 0.18 tolerated(0.17) possibly_damaging(0.743) TCGA-E2-A1LH-01 6 36995284 36995285 - C FGD2 Frame_Shift_Ins p.R564Pfs*10 0.34 TCGA-E2-A1LH-01 6 42980860 42980860 C G MEA1 Missense_Mutation p.R99P 0.37 deleterious(0.01) probably_damaging(0.934) TCGA-E2-A1LH-01 6 42986864 42986864 G C KLHDC3 Missense_Mutation p.D322H 0.11 tolerated(0.12) benign(0.302) TCGA-E2-A1LH-01 6 43223320 43223320 C A TTBK1 Missense_Mutation p.L225I 0.17 probably_damaging(0.983) TCGA-E2-A1LH-01 6 47646792 47646792 G A GPR111 Missense_Mutation p.M131I 0.20 tolerated(1) benign(0.009) TCGA-E2-A1LH-01 6 83841993 83841993 T G DOPEY1 Silent p.P905P 0.33 TCGA-E2-A1LH-01 6 84862461 84862461 T G KIAA1009 Missense_Mutation p.K1144N 0.24 deleterious(0.02) possibly_damaging(0.733) TCGA-E2-A1LH-01 6 99322257 99322257 G C FBXL4 Missense_Mutation p.S588C 0.05 tolerated(0.18) benign(0.004) TCGA-E2-A1LH-01 7 100656338 100656345 GTGAACAA - MUC12 Frame_Shift_Del p.N5186Hfs*11 0.20 TCGA-E2-A1LH-01 7 103767160 103767160 C T ORC5 3'UTR 0.15 TCGA-E2-A1LH-01 7 103767191 103767191 C G ORC5 3'UTR 0.10 TCGA-E2-A1LH-01 7 104752795 104752795 A G KMT2E Missense_Mutation p.Y1531C 0.14 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-E2-A1LH-01 7 137776547 137776547 C T AKR1D1 Missense_Mutation p.R99C 0.12 deleterious(0) probably_damaging(0.95) TCGA-E2-A1LH-01 7 13949273 13949273 G T ETV1 Silent p.V308V 0.18 TCGA-E2-A1LH-01 7 150773264 150773264 G A SLC4A2 Silent p.E1212E 0.15 TCGA-E2-A1LH-01 7 152346029 152346029 C T XRCC2 Missense_Mutation p.E181K 0.15 tolerated(0.4) benign(0.014) TCGA-E2-A1LH-01 7 21639618 21639618 C G DNAH11 Missense_Mutation p.L961V 0.20 benign(0.401) TCGA-E2-A1LH-01 7 26233259 26233259 A T HNRNPA2B1 Silent p.G271G 0.09 TCGA-E2-A1LH-01 7 26233266 26233266 T C HNRNPA2B1 Missense_Mutation p.Y269C 0.07 tolerated(0.17) benign(0.061) TCGA-E2-A1LH-01 7 33573686 33573686 C G BBS9 Missense_Mutation p.Q807E 0.21 deleterious(0) benign(0.009) TCGA-E2-A1LH-01 7 6509386 6509386 C G KDELR2 Splice_Site p.X65_splice 0.21 TCGA-E2-A1LH-01 7 72718027 72718027 G C NSUN5 Missense_Mutation p.P314R 0.35 deleterious(0) benign(0.347) TCGA-E2-A1LH-01 8 100523695 100523695 A C VPS13B Silent p.R1555R 0.07 TCGA-E2-A1LH-01 8 100883081 100883081 G A VPS13B Missense_Mutation p.D3846N 0.12 tolerated(0.44) possibly_damaging(0.539) TCGA-E2-A1LH-01 8 101154377 101154377 C G FBXO43 Missense_Mutation p.M35I 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-E2-A1LH-01 8 103282400 103282400 C A UBR5 Missense_Mutation p.R2366I 0.12 deleterious(0.01) possibly_damaging(0.835) TCGA-E2-A1LH-01 8 109228677 109228677 A G EIF3E Silent p.F305F 0.11 TCGA-E2-A1LH-01 8 121475934 121475934 G T MTBP Missense_Mutation p.G327V 0.08 tolerated(0.25) benign(0.213) TCGA-E2-A1LH-01 8 122641265 122641265 C A HAS2 Missense_Mutation p.V106L 0.10 tolerated(0.22) benign(0.285) TCGA-E2-A1LH-01 8 130867881 130867881 G A FAM49B Silent p.F138F 0.24 TCGA-E2-A1LH-01 8 144803803 144803803 C A MAPK15 Missense_Mutation p.P430H 0.07 deleterious(0.02) possibly_damaging(0.906) TCGA-E2-A1LH-01 8 20110933 20110933 G A LZTS1 Missense_Mutation p.A170V 0.20 deleterious(0.04) possibly_damaging(0.501) TCGA-E2-A1LH-01 8 2041867 2041867 A T MYOM2 Missense_Mutation p.M692L 0.29 tolerated(1) benign(0.002) TCGA-E2-A1LH-01 8 37730075 37730075 C G RAB11FIP1 Missense_Mutation p.D749H 0.14 tolerated(0.23) benign(0.003) TCGA-E2-A1LH-01 8 42045512 42045512 G T PLAT Missense_Mutation p.F92L 0.16 tolerated(0.61) benign(0.119) TCGA-E2-A1LH-01 8 53586778 53586778 C T RB1CC1 Missense_Mutation p.R210K 0.10 deleterious(0.03) probably_damaging(0.986) TCGA-E2-A1LH-01 8 94768057 94768057 G A TMEM67 Missense_Mutation p.G92E 0.09 tolerated(0.1) benign(0.062) TCGA-E2-A1LH-01 8 95686579 95686579 A G ESRP1 Missense_Mutation p.D499G 0.09 deleterious(0.04) possibly_damaging(0.574) TCGA-E2-A1LH-01 8 99158821 99158821 T A POP1 Silent p.L540L 0.12 TCGA-E2-A1LH-01 9 107332086 107332086 T C OR13C8 Missense_Mutation p.V213A 0.11 deleterious(0.03) benign(0.307) TCGA-E2-A1LH-01 9 14859447 14859447 A G FREM1 Missense_Mutation p.I122T 0.17 tolerated(0.43) benign(0.003) TCGA-E2-A1LH-01 9 35707382 35707382 G A TLN1 Missense_Mutation p.P1579L 0.22 deleterious(0) probably_damaging(0.976) TCGA-E2-A1LH-01 9 78799667 78799667 G C PCSK5 Missense_Mutation p.G759A 0.13 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LH-01 9 94487258 94487258 G C ROR2 Missense_Mutation p.I506M 0.20 deleterious(0) probably_damaging(0.997) TCGA-E2-A1LH-01 X 100601591 100601591 C T TIMM8A Missense_Mutation p.V64M 0.22 deleterious(0.01) probably_damaging(0.951) TCGA-E2-A1LH-01 X 107406128 107406128 G C COL4A6 Missense_Mutation p.L1405V 0.14 benign(0.055) TCGA-E2-A1LH-01 X 129518656 129518656 G T GPR119 Missense_Mutation p.L256I 0.09 tolerated(0.16) possibly_damaging(0.864) TCGA-E2-A1LH-01 X 135077034 135077034 C A SLC9A6 Missense_Mutation p.P139T 0.15 deleterious(0.04) benign(0.094) TCGA-E2-A1LH-01 X 149101875 149101875 C T CXorf40B Missense_Mutation p.R73K 0.09 tolerated(0.81) benign(0.014) TCGA-E2-A1LH-01 X 151900530 151900530 C G MAGEA12 Missense_Mutation p.E91Q 0.20 tolerated(0.07) benign(0.098) TCGA-E2-A1LH-01 X 41306978 41306978 C T NYX 5'UTR 0.30 TCGA-E2-A1LH-01 X 49063555 49063555 G C CACNA1F Silent p.L1725L 0.20 TCGA-E2-A1LH-01 X 71855080 71855080 G A PHKA1 Missense_Mutation p.L547F 0.19 deleterious(0.02) possibly_damaging(0.807) TCGA-E2-A1LH-01 X 83724316 83724316 G C HDX Missense_Mutation p.Q139E 0.12 tolerated(0.9) benign(0.05) TCGA-E2-A1LI-01 10 79614081 79614081 C A DLG5 Missense_Mutation p.C195F 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A1LI-01 11 130068303 130068303 G C ST14 Missense_Mutation p.E520D 0.13 deleterious(0.02) probably_damaging(1) TCGA-E2-A1LI-01 12 112846113 112846113 G C RPL6 Silent p.L89L 0.24 TCGA-E2-A1LI-01 12 26636682 26636682 C T ITPR2 Silent p.Q1987Q 0.09 TCGA-E2-A1LI-01 12 9232360 9232360 G A A2M Missense_Mutation p.P969L 0.05 deleterious(0) probably_damaging(0.996) TCGA-E2-A1LI-01 13 41333214 41333214 C G MRPS31 Missense_Mutation p.A157P 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-E2-A1LI-01 15 22855186 22855186 G A TUBGCP5 Silent p.V549V 0.38 TCGA-E2-A1LI-01 15 52401910 52401910 C G BCL2L10 3'UTR 0.36 TCGA-E2-A1LI-01 15 60720860 60720860 G C NARG2 Missense_Mutation p.S863C 0.25 deleterious(0) probably_damaging(1) TCGA-E2-A1LI-01 19 1784855 1784855 C T ATP8B3 Missense_Mutation p.R1208Q 0.14 tolerated(0.13) probably_damaging(0.982) TCGA-E2-A1LI-01 1 150485941 150485941 T C ECM1 Nonstop_Mutation p.*568Rext*6 0.36 TCGA-E2-A1LI-01 1 153945720 153945720 G C CREB3L4 Missense_Mutation p.E265Q 0.12 tolerated(0.35) probably_damaging(1) TCGA-E2-A1LI-01 1 201182360 201182360 C A IGFN1 Missense_Mutation p.S2780Y 0.10 probably_damaging(0.98) TCGA-E2-A1LI-01 1 215932045 215932045 C T USH2A Missense_Mutation p.D3761N 0.32 benign(0.021) TCGA-E2-A1LI-01 1 232534642 232534642 C T SIPA1L2 3'UTR 0.50 TCGA-E2-A1LI-01 1 232534693 232534693 C G SIPA1L2 3'UTR 0.24 TCGA-E2-A1LI-01 1 236906323 236906323 C T ACTN2 Missense_Mutation p.T412M 0.05 tolerated(0.6) benign(0.023) TCGA-E2-A1LI-01 1 248005024 248005024 T G OR11L1 Missense_Mutation p.M59L 0.36 deleterious(0) probably_damaging(0.978) TCGA-E2-A1LI-01 21 38524309 38524309 C A TTC3 Missense_Mutation p.P798H 0.32 deleterious(0) probably_damaging(0.96) TCGA-E2-A1LI-01 2 128409336 128409336 G T GPR17 3'UTR 0.27 TCGA-E2-A1LI-01 2 157369974 157369974 G T GPD2 Missense_Mutation p.K209N 0.20 tolerated(0.06) benign(0.236) TCGA-E2-A1LI-01 2 157369975 157369975 G T GPD2 Missense_Mutation p.D210Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-E2-A1LI-01 2 157369990 157369990 G T GPD2 Missense_Mutation p.A215S 0.17 deleterious(0.03) probably_damaging(0.913) TCGA-E2-A1LI-01 2 26698897 26698897 G A OTOF Missense_Mutation p.A959V 0.17 tolerated(1) benign(0.001) TCGA-E2-A1LI-01 2 96078498 96078498 C G FAHD2A Missense_Mutation p.P290A 0.14 deleterious(0.04) possibly_damaging(0.649) TCGA-E2-A1LI-01 3 63466619 63466619 G C SYNPR Missense_Mutation p.A66P 0.25 tolerated(0.23) possibly_damaging(0.735) TCGA-E2-A1LI-01 6 27806084 27806084 G C HIST1H2AK Missense_Mutation p.R12G 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-E2-A1LI-01 6 31431903 31431903 G A HCP5 RNA 0.10 TCGA-E2-A1LI-01 7 123197956 123197956 C T NDUFA5 5'UTR 0.20 TCGA-E2-A1LI-01 7 123197957 123197957 C A NDUFA5 5'UTR 0.21 TCGA-E2-A1LI-01 7 99021452 99021452 T C ATP5J2-PTCD1 Silent p.E671E 0.20 TCGA-E2-A1LI-01 8 145675924 145675924 G C CYHR1 Missense_Mutation p.D309E 0.18 tolerated(0.07) benign(0.007) TCGA-E2-A1LI-01 8 89209486 89209486 G A MMP16 Missense_Mutation p.S61L 0.11 deleterious(0) possibly_damaging(0.745) TCGA-E2-A1LI-01 9 14720355 14720355 T G CER1 Silent p.V179V 0.12 TCGA-E2-A1LI-01 X 101911705 101911705 C G GPRASP1 Missense_Mutation p.A955G 0.27 deleterious(0.03) benign(0.363) TCGA-E2-A1LI-01 X 117960294 117960294 G C ZCCHC12 Missense_Mutation p.E363Q 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.666) TCGA-E2-A1LI-01 X 70375063 70375063 G C NLGN3 Splice_Site p.X193_splice 0.14 TCGA-E2-A1LK-01 10 395377 395377 C T DIP2C Silent p.S1001S 0.17 TCGA-E2-A1LK-01 10 43977766 43977767 - A ZNF487 3'UTR 0.71 TCGA-E2-A1LK-01 10 50599264 50599264 G A DRGX Silent p.D31D 0.08 TCGA-E2-A1LK-01 10 5788704 5788704 T C FAM208B Missense_Mutation p.L1107P 0.16 tolerated(0.11) benign(0.055) TCGA-E2-A1LK-01 10 875659 875659 G A LARP4B Nonsense_Mutation p.R293* 0.30 TCGA-E2-A1LK-01 11 47182744 47182744 A - C11orf49 Intron 0.50 TCGA-E2-A1LK-01 11 57252590 57252590 G A SLC43A1 Silent p.S553S 0.36 TCGA-E2-A1LK-01 11 75501262 75501262 A G DGAT2 Missense_Mutation p.I94V 0.28 deleterious(0.05) benign(0.01) TCGA-E2-A1LK-01 11 77301600 77301600 G A AQP11 Missense_Mutation p.R188Q 0.53 tolerated(0.11) possibly_damaging(0.902) TCGA-E2-A1LK-01 12 113448140 113448140 T G OAS2 Intron 0.50 TCGA-E2-A1LK-01 12 30872133 30872133 C A CAPRIN2 Intron 0.55 TCGA-E2-A1LK-01 14 55255646 55255646 G A SAMD4A Missense_Mutation p.R714Q 0.24 deleterious(0.01) possibly_damaging(0.88) TCGA-E2-A1LK-01 14 65472911 65472911 A C CHURC1-FNTB Intron 0.41 TCGA-E2-A1LK-01 15 50741617 50741617 T G USP8 Silent p.L90L 0.45 TCGA-E2-A1LK-01 15 90809517 90809518 - A NGRN Intron 0.42 TCGA-E2-A1LK-01 16 27497439 27497439 T G GTF3C1 Missense_Mutation p.Y1246S 0.14 deleterious(0.01) probably_damaging(0.974) TCGA-E2-A1LK-01 17 20406525 20406525 G A RP11-434D2.7 3'Flank 0.48 TCGA-E2-A1LK-01 17 20799309 20799309 G A CCDC144NL Missense_Mutation p.R9W 0.27 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-E2-A1LK-01 17 42090413 42090413 G A TMEM101 Silent p.T143T 0.59 TCGA-E2-A1LK-01 17 42290592 42290592 C T UBTF Missense_Mutation p.R178Q 0.37 tolerated(0.22) benign(0.234) TCGA-E2-A1LK-01 17 4535496 4535496 C T ALOX15 Missense_Mutation p.A541T 0.38 deleterious(0.02) possibly_damaging(0.487) TCGA-E2-A1LK-01 17 57987923 57987923 G A RPS6KB1 Missense_Mutation p.G48S 0.48 tolerated(0.75) benign(0.016) TCGA-E2-A1LK-01 17 7579432 7579433 - G TP53 Frame_Shift_Ins p.A86Cfs*63 0.55 TCGA-E2-A1LK-01 18 30804786 30804786 C G CCDC178 Missense_Mutation p.E591Q 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-E2-A1LK-01 19 19359641 19359641 G A NCAN Missense_Mutation p.R1257Q 0.26 deleterious(0.01) possibly_damaging(0.794) TCGA-E2-A1LK-01 19 43243208 43243208 G A PSG3 Missense_Mutation p.T33I 0.09 deleterious(0.02) benign(0.12) TCGA-E2-A1LK-01 19 46997888 46997888 G A PNMAL2 Missense_Mutation p.R279C 0.44 tolerated_low_confidence(0.28) benign(0.001) TCGA-E2-A1LK-01 1 16927398 16927398 T G NBPF1 Intron 0.23 TCGA-E2-A1LK-01 1 203154343 203154344 - C CHI3L1 Frame_Shift_Ins p.L76Afs*58 0.43 TCGA-E2-A1LK-01 1 229676385 229676385 C G ABCB10 Missense_Mutation p.E391Q 0.20 deleterious(0.01) probably_damaging(0.94) TCGA-E2-A1LK-01 1 229678083 229678083 C G ABCB10 Missense_Mutation p.L319F 0.24 deleterious(0.01) probably_damaging(0.98) TCGA-E2-A1LK-01 20 18414355 18414355 C T DZANK1 Missense_Mutation p.V268M 0.47 deleterious(0) probably_damaging(0.942) TCGA-E2-A1LK-01 20 23472172 23472172 G A CST8 5'UTR 0.27 TCGA-E2-A1LK-01 20 44637580 44637580 G A MMP9 Silent p.Q5Q 0.18 TCGA-E2-A1LK-01 20 61143471 61143471 C T C20orf166 5'Flank 0.28 TCGA-E2-A1LK-01 20 8637901 8637901 G A PLCB1 Missense_Mutation p.R222Q 0.05 deleterious(0) possibly_damaging(0.891) TCGA-E2-A1LK-01 21 43256225 43256225 G A PRDM15 Silent p.N791N 0.20 TCGA-E2-A1LK-01 22 37964206 37964206 C T CDC42EP1 Silent p.P185P 0.50 TCGA-E2-A1LK-01 22 44004466 44004466 G A EFCAB6 Silent p.T859T 0.51 TCGA-E2-A1LK-01 22 50192705 50192705 C - BRD1 Frame_Shift_Del p.H530Tfs*9 0.29 TCGA-E2-A1LK-01 2 109547441 109547441 C T EDAR Silent p.T10T 0.63 TCGA-E2-A1LK-01 2 125405531 125405531 G A CNTNAP5 Silent p.T690T 0.56 TCGA-E2-A1LK-01 2 179581989 179581989 T G TTN Missense_Mutation p.K8491T 0.64 TCGA-E2-A1LK-01 2 26707419 26707419 G A OTOF Silent p.D376D 0.05 TCGA-E2-A1LK-01 3 141499486 141499486 T C GRK7 Missense_Mutation p.F295L 0.37 deleterious(0.01) possibly_damaging(0.731) TCGA-E2-A1LK-01 3 14190419 14190419 C T XPC Silent p.R715R 0.26 TCGA-E2-A1LK-01 3 49845239 49845239 C T UBA7 Missense_Mutation p.R882H 0.27 deleterious(0) probably_damaging(0.998) TCGA-E2-A1LK-01 3 53804500 53804500 G A CACNA1D Missense_Mutation p.R1342Q 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-E2-A1LK-01 3 7188164 7188164 C T GRM7 Missense_Mutation p.T182M 0.40 deleterious(0) probably_damaging(0.999) TCGA-E2-A1LK-01 4 46967096 46967096 T G GABRA4 Missense_Mutation p.Y342S 0.50 deleterious(0) probably_damaging(1) TCGA-E2-A1LK-01 4 66286192 66286192 G T EPHA5 Silent p.I498I 0.17 TCGA-E2-A1LK-01 6 158535820 158535821 CC - SERAC1 Splice_Site p.X562_splice 0.20 TCGA-E2-A1LK-01 6 170159085 170159085 G A ERMARD Missense_Mutation p.V177I 0.37 tolerated(1) benign(0.009) TCGA-E2-A1LK-01 7 103207091 103207091 C T RELN Silent p.A1568A 0.09 TCGA-E2-A1LK-01 8 144995814 144995814 C T PLEC Silent p.T2862T 0.09 TCGA-E2-A1LK-01 8 56435983 56435983 G A XKR4 Missense_Mutation p.A384T 0.11 tolerated(0.16) probably_damaging(0.996) TCGA-E2-A1LK-01 X 120181770 120181770 G A GLUD2 Missense_Mutation p.A78T 0.47 tolerated(0.09) benign(0.043) TCGA-E2-A1LK-01 X 154292281 154292281 C T CMC4 Silent p.P6P 0.11 TCGA-E2-A1LK-01 X 40506283 40506283 G T CXorf38 Silent p.P109P 0.35 TCGA-E2-A1LK-01 X 48675747 48675747 T A HDAC6 Silent p.A602A 0.21 TCGA-E2-A1LK-01 X 70349046 70349046 T A MED12 Missense_Mutation p.N1186K 0.10 benign(0.306) TCGA-E2-A1LL-01 10 126453973 126453973 C G METTL10 Missense_Mutation p.E202Q 0.10 tolerated(0.11) benign(0.082) TCGA-E2-A1LL-01 10 134261527 134261527 G A C10orf91 Missense_Mutation p.V134I 0.38 deleterious_low_confidence(0) benign(0.198) TCGA-E2-A1LL-01 10 52390799 52390799 T C RP11-50E11.3 RNA 0.13 TCGA-E2-A1LL-01 10 6553110 6553110 G A PRKCQ Silent p.P55P 0.39 TCGA-E2-A1LL-01 10 73046627 73046627 G T UNC5B Splice_Site p.X245_splice 0.26 TCGA-E2-A1LL-01 10 88704043 88704043 T A MMRN2 Missense_Mutation p.M211L 0.56 tolerated(1) benign(0) TCGA-E2-A1LL-01 11 101454133 101454133 C G TRPC6 Missense_Mutation p.M34I 0.20 tolerated_low_confidence(0.14) benign(0) TCGA-E2-A1LL-01 11 126141532 126141532 G T FOXRED1 Missense_Mutation p.V96L 0.25 deleterious(0.04) probably_damaging(0.914) TCGA-E2-A1LL-01 11 59559680 59559680 T A STX3 Missense_Mutation p.L153H 0.11 deleterious(0) probably_damaging(1) TCGA-E2-A1LL-01 11 71943304 71943304 G A INPPL1 Missense_Mutation p.V546I 0.25 tolerated(0.13) benign(0.246) TCGA-E2-A1LL-01 12 123466575 123466575 C G ARL6IP4 Missense_Mutation p.Q304E 0.20 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-E2-A1LL-01 12 21531360 21531360 G T IAPP Nonstop_Mutation p.*90Yext*4 0.70 TCGA-E2-A1LL-01 12 9907090 9907090 C T CD69 Intron 0.44 TCGA-E2-A1LL-01 13 31309730 31309730 G T ALOX5AP 5'UTR 0.14 TCGA-E2-A1LL-01 14 22749491 22749491 G T TRAV38-2DV8 Missense_Mutation p.R70L 0.21 tolerated(0.1) benign(0.086) TCGA-E2-A1LL-01 14 55621420 55621420 T C DLGAP5 Missense_Mutation p.T660A 0.24 tolerated(0.61) benign(0.015) TCGA-E2-A1LL-01 14 65239994 65239994 C G SPTB Missense_Mutation p.E1708Q 0.12 tolerated(0.08) probably_damaging(0.911) TCGA-E2-A1LL-01 15 31294084 31294084 T C TRPM1 Missense_Mutation p.M1624V 0.25 tolerated_low_confidence(0.71) benign(0) TCGA-E2-A1LL-01 15 77474196 77474196 T A PEAK1 Missense_Mutation p.S25C 0.29 deleterious(0) probably_damaging(0.91) TCGA-E2-A1LL-01 17 74902194 74902194 G A MGAT5B Nonsense_Mutation p.W328* 0.33 TCGA-E2-A1LL-01 17 8280943 8280943 C T RPL26 Missense_Mutation p.R126H 0.47 tolerated(0.21) benign(0.002) TCGA-E2-A1LL-01 19 38959725 38959725 C A RYR1 Silent p.V1167V 0.15 TCGA-E2-A1LL-01 1 10093705 10093705 C T UBE4B 5'UTR 0.10 TCGA-E2-A1LL-01 1 152659414 152659414 G T LCE2B Missense_Mutation p.C32F 0.13 tolerated_low_confidence(0.15) unknown(0) TCGA-E2-A1LL-01 1 197890527 197890527 C T LHX9 Silent p.S157S 0.15 TCGA-E2-A1LL-01 1 34329930 34329930 G A HMGB4 Silent p.S46S 0.41 TCGA-E2-A1LL-01 1 99150547 99150547 T C SNX7 Missense_Mutation p.L96P 0.27 deleterious(0) probably_damaging(0.986) TCGA-E2-A1LL-01 20 31572971 31572971 C T SUN5 Silent p.K306K 0.17 TCGA-E2-A1LL-01 22 22293845 22293845 G A PPM1F Intron 0.14 TCGA-E2-A1LL-01 22 36685134 36685134 C G MYH9 Missense_Mutation p.K1518N 0.27 probably_damaging(0.999) TCGA-E2-A1LL-01 2 102083254 102083254 C T RFX8 Silent p.P19P 0.35 TCGA-E2-A1LL-01 2 206630294 206630294 G T NRP2 Nonsense_Mutation p.E802* 0.14 TCGA-E2-A1LL-01 2 217055015 217055015 G A XRCC5 Silent p.K634K 0.19 TCGA-E2-A1LL-01 2 219679713 219679713 A G CYP27A1 Missense_Mutation p.N519S 0.13 tolerated(0.4) benign(0.004) TCGA-E2-A1LL-01 2 228883047 228883047 C G SPHKAP Missense_Mutation p.E841D 0.24 tolerated(0.81) benign(0.012) TCGA-E2-A1LL-01 2 238643948 238643948 G A LRRFIP1 Intron 0.25 TCGA-E2-A1LL-01 2 25366711 25366711 C G EFR3B Missense_Mutation p.P677R 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-E2-A1LL-01 2 27598788 27598788 T A SNX17 Missense_Mutation p.Y352N 0.15 deleterious(0) probably_damaging(1) TCGA-E2-A1LL-01 2 75099526 75099526 C T HK2 Missense_Mutation p.H159Y 0.27 deleterious(0.05) benign(0.002) TCGA-E2-A1LL-01 3 145809641 145809641 C T PLOD2 Silent p.Q275Q 0.12 TCGA-E2-A1LL-01 3 183013089 183013089 C G MCF2L2 Silent p.S558S 0.44 TCGA-E2-A1LL-01 3 47385123 47385123 G A KLHL18 Missense_Mutation p.A473T 0.33 tolerated(0.1) possibly_damaging(0.577) TCGA-E2-A1LL-01 3 56675495 56675495 T C FAM208A Missense_Mutation p.E834G 0.31 deleterious(0) possibly_damaging(0.46) TCGA-E2-A1LL-01 4 47593309 47593309 T G ATP10D Missense_Mutation p.L1398V 0.17 tolerated_low_confidence(0.26) benign(0.001) TCGA-E2-A1LL-01 4 80246366 80246366 T C NAA11 Silent p.S222S 0.21 TCGA-E2-A1LL-01 5 128365299 128365299 A C SLC27A6 Missense_Mutation p.I528L 0.12 tolerated(0.28) benign(0.011) TCGA-E2-A1LL-01 5 170827202 170827202 G A NPM1 Silent p.A190A 0.18 TCGA-E2-A1LL-01 5 195276 195276 C T LRRC14B Silent p.Y451Y 0.32 TCGA-E2-A1LL-01 6 152749432 152749432 C G SYNE1 Missense_Mutation p.E1628D 0.18 benign(0.004) TCGA-E2-A1LL-01 6 152809633 152809633 T G SYNE1 Missense_Mutation p.E315D 0.14 benign(0.001) TCGA-E2-A1LL-01 6 38998210 38998210 A C DNAH8 3'UTR 0.33 TCGA-E2-A1LL-01 6 6654958 6654958 G C LY86 3'UTR 0.25 TCGA-E2-A1LL-01 6 76425115 76425115 T - SENP6 Frame_Shift_Del p.F1049Lfs*5 0.60 TCGA-E2-A1LL-01 7 154863345 154863345 G T HTR5A Missense_Mutation p.V246L 0.15 tolerated(0.46) benign(0.008) TCGA-E2-A1LL-01 7 65425997 65425997 G A GUSB Missense_Mutation p.P615S 0.10 deleterious(0) probably_damaging(1) TCGA-E2-A1LL-01 7 74197317 74197317 G A NCF1 Missense_Mutation p.A163T 0.15 deleterious(0.01) possibly_damaging(0.69) TCGA-E2-A1LL-01 7 86554947 86554947 C T KIAA1324L Silent p.T432T 0.54 TCGA-E2-A1LL-01 9 34500839 34500839 T G DNAI1 Splice_Site p.X340_splice 0.37 TCGA-E2-A1LL-01 9 38595563 38595563 T C ANKRD18A Missense_Mutation p.R592G 0.18 deleterious(0) benign(0.005) TCGA-E2-A1LL-01 9 66466018 66466018 A G RP11-262H14.1 RNA 0.14 TCGA-E2-A1LL-01 X 21666975 21666975 G C CNKSR2 Missense_Mutation p.D907H 0.32 deleterious(0) possibly_damaging(0.86) TCGA-E2-A1LL-01 X 78618485 78618485 C A ITM2A Missense_Mutation p.S132I 0.33 deleterious(0.04) benign(0.089) TCGA-E2-A2P6-01 10 103534571 103534571 G C FGF8 Silent p.L85L 0.39 TCGA-E2-A2P6-01 10 113915490 113915490 G C GPAM Intron 0.33 TCGA-E2-A2P6-01 10 113915732 113915732 G C GPAM Missense_Mutation p.S734C 0.51 deleterious(0.04) possibly_damaging(0.778) TCGA-E2-A2P6-01 10 124190341 124190341 C G PLEKHA1 3'UTR 0.42 TCGA-E2-A2P6-01 10 129183113 129183113 G A DOCK1 Silent p.T1268T 0.52 TCGA-E2-A2P6-01 10 27434469 27434469 C G YME1L1 Missense_Mutation p.Q130H 0.24 tolerated(0.09) benign(0.008) TCGA-E2-A2P6-01 10 45499206 45499206 G A ZNF22 Silent p.Q130Q 0.37 TCGA-E2-A2P6-01 10 75552590 75552590 G A ZSWIM8 Missense_Mutation p.E765K 0.09 tolerated(0.33) benign(0.004) TCGA-E2-A2P6-01 10 81915105 81915105 C T ANXA11 3'UTR 0.58 TCGA-E2-A2P6-01 10 91098974 91098974 G C IFIT3 Missense_Mutation p.E188Q 0.33 tolerated(0.75) benign(0.002) TCGA-E2-A2P6-01 11 104915369 104915369 C G CARD16 Missense_Mutation p.E8D 0.62 tolerated(0.11) benign(0.173) TCGA-E2-A2P6-01 11 31312200 31312200 C G DCDC1 Missense_Mutation p.M318I 0.27 tolerated(0.42) benign(0.002) TCGA-E2-A2P6-01 11 47330180 47330180 G C MADD Missense_Mutation p.K1266N 0.48 tolerated(0.53) benign(0.001) TCGA-E2-A2P6-01 11 56309909 56309909 G C OR5M11 Silent p.V275V 0.56 TCGA-E2-A2P6-01 11 61160016 61160016 G A TMEM216 5'UTR 0.11 TCGA-E2-A2P6-01 11 65810977 65810977 C T GAL3ST3 Silent p.P99P 0.67 TCGA-E2-A2P6-01 11 66811263 66811263 C T SYT12 Missense_Mutation p.S259F 0.23 tolerated(0.05) benign(0.269) TCGA-E2-A2P6-01 11 66985342 66985342 C T KDM2A Silent p.F276F 0.18 TCGA-E2-A2P6-01 11 67269467 67269467 C T PITPNM1 Missense_Mutation p.R169Q 0.40 deleterious(0) possibly_damaging(0.599) TCGA-E2-A2P6-01 11 76928297 76928297 C T GDPD4 3'UTR 0.31 TCGA-E2-A2P6-01 12 112323732 112323732 C G MAPKAPK5 Silent p.V287V 0.43 TCGA-E2-A2P6-01 12 112516491 112516491 C T NAA25 Missense_Mutation p.E178K 0.42 deleterious(0.02) benign(0.128) TCGA-E2-A2P6-01 12 116429416 116429416 G C MED13L Missense_Mutation p.L1115V 0.32 deleterious(0) unknown(0) TCGA-E2-A2P6-01 12 132504703 132504703 C T EP400 Nonsense_Mutation p.Q1463* 0.48 TCGA-E2-A2P6-01 12 21445246 21445246 G A SLCO1A2 Nonsense_Mutation p.Q488* 0.38 TCGA-E2-A2P6-01 12 21962817 21962817 C T ABCC9 Silent p.K1428K 0.35 TCGA-E2-A2P6-01 12 31116851 31116851 G A TSPAN11 Missense_Mutation p.A59T 0.24 tolerated(0.24) benign(0.02) TCGA-E2-A2P6-01 12 70729251 70729251 C T CNOT2 Missense_Mutation p.S228L 0.57 deleterious(0) benign(0.062) TCGA-E2-A2P6-01 12 97303610 97303610 G A NEDD1 Missense_Mutation p.V32M 0.46 deleterious(0.01) benign(0.221) TCGA-E2-A2P6-01 13 113899465 113899465 G A CUL4A Splice_Site p.X482_splice 0.39 TCGA-E2-A2P6-01 13 37393936 37393936 G A RFXAP Missense_Mutation p.E148K 0.73 deleterious(0) probably_damaging(0.996) TCGA-E2-A2P6-01 13 42752318 42752318 C T DGKH Silent p.L500L 0.30 TCGA-E2-A2P6-01 14 106437799 106437799 G A ADAM6 RNA 0.41 TCGA-E2-A2P6-01 14 106780570 106780570 G A IGHV4-28 Silent p.F98F 0.38 TCGA-E2-A2P6-01 14 20249178 20249178 G A OR4M1 Missense_Mutation p.E233K 0.37 tolerated(0.42) benign(0.032) TCGA-E2-A2P6-01 14 36159079 36159079 A G RALGAPA1 Silent p.S799S 0.23 TCGA-E2-A2P6-01 14 36985825 36985825 A T NKX2-1 3'UTR 0.38 TCGA-E2-A2P6-01 14 58785449 58785449 A T ARID4A Missense_Mutation p.L125F 0.48 deleterious(0) probably_damaging(0.999) TCGA-E2-A2P6-01 14 92563056 92563056 C T ATXN3 Missense_Mutation p.G51R 0.11 deleterious(0.03) possibly_damaging(0.857) TCGA-E2-A2P6-01 15 100672300 100672300 C T ADAMTS17 Missense_Mutation p.D545N 0.44 tolerated(0.11) possibly_damaging(0.451) TCGA-E2-A2P6-01 15 22332740 22332740 G C RP11-69H14.6 RNA 0.39 TCGA-E2-A2P6-01 15 34671359 34671359 G A GOLGA8A 3'UTR 0.44 TCGA-E2-A2P6-01 15 40632136 40632136 C G C15orf52 Missense_Mutation p.K75N 0.35 deleterious(0) probably_damaging(0.971) TCGA-E2-A2P6-01 15 41037414 41037414 C T RMDN3 Missense_Mutation p.D190N 0.10 deleterious(0.01) possibly_damaging(0.894) TCGA-E2-A2P6-01 15 43363018 43363018 C T UBR1 Missense_Mutation p.E212K 0.36 tolerated(0.17) benign(0.019) TCGA-E2-A2P6-01 15 43363024 43363024 C T UBR1 Missense_Mutation p.E210K 0.35 tolerated(0.46) benign(0.103) TCGA-E2-A2P6-01 15 45965918 45965918 C G SQRDL Missense_Mutation p.I191M 0.28 deleterious(0) possibly_damaging(0.776) TCGA-E2-A2P6-01 15 51289803 51289803 C T AP4E1 Missense_Mutation p.S876L 0.24 deleterious_low_confidence(0) benign(0.098) TCGA-E2-A2P6-01 16 24836136 24836136 G - TNRC6A 3'UTR 0.30 TCGA-E2-A2P6-01 16 2692340 2692340 G A CTD-3126B10.4 3'Flank 0.36 TCGA-E2-A2P6-01 16 2815000 2815000 C T SRRM2 Nonsense_Mutation p.Q1491* 0.21 TCGA-E2-A2P6-01 16 2816501 2816501 G A SRRM2 Missense_Mutation p.R1991Q 0.43 unknown(0) TCGA-E2-A2P6-01 16 31336677 31336679 CTT - ITGAM In_Frame_Del p.F823del 0.62 TCGA-E2-A2P6-01 16 4504878 4504878 G A DNAJA3 Missense_Mutation p.G469E 0.43 deleterious(0) probably_damaging(1) TCGA-E2-A2P6-01 16 89924757 89924757 C T SPIRE2 Silent p.L372L 0.60 TCGA-E2-A2P6-01 17 26962559 26962559 G C KIAA0100 Silent p.V682V 0.33 TCGA-E2-A2P6-01 17 27402321 27402321 G C TIAF1 5'UTR 0.44 TCGA-E2-A2P6-01 17 30302685 30302685 G A SUZ12 Missense_Mutation p.R259K 0.22 tolerated(0.68) benign(0.006) TCGA-E2-A2P6-01 17 31415884 31415884 C T ASIC2 Silent p.Q328Q 0.32 TCGA-E2-A2P6-01 17 48595001 48595001 A T MYCBPAP Missense_Mutation p.H180L 0.09 deleterious(0) possibly_damaging(0.576) TCGA-E2-A2P6-01 17 73489891 73489891 C T KIAA0195 Silent p.I767I 0.53 TCGA-E2-A2P6-01 17 78936301 78936301 G A RPTOR Missense_Mutation p.E1245K 0.33 tolerated(0.49) benign(0.113) TCGA-E2-A2P6-01 17 79973183 79973183 G A ASPSCR1 Missense_Mutation p.G529D 0.33 tolerated_low_confidence(0.06) benign(0.412) TCGA-E2-A2P6-01 18 21355771 21355771 C T LAMA3 Missense_Mutation p.P430L 0.67 benign(0.02) TCGA-E2-A2P6-01 18 44065084 44065084 C T LOXHD1 Missense_Mutation p.G916E 0.42 tolerated(0.33) benign(0.065) TCGA-E2-A2P6-01 18 60625954 60625954 G A PHLPP1 Silent p.P1139P 0.57 TCGA-E2-A2P6-01 19 10942316 10942316 C T DNM2 3'UTR 0.40 TCGA-E2-A2P6-01 19 16631341 16631341 C T C19orf44 3'UTR 0.18 TCGA-E2-A2P6-01 19 16631645 16631645 C G CHERP Missense_Mutation p.K731N 0.36 tolerated(0.2) possibly_damaging(0.709) TCGA-E2-A2P6-01 19 1775382 1775382 G A ONECUT3 Missense_Mutation p.E475K 0.33 deleterious(0.03) benign(0.017) TCGA-E2-A2P6-01 19 22155532 22155532 C G ZNF208 Missense_Mutation p.K768N 0.62 deleterious(0.01) possibly_damaging(0.899) TCGA-E2-A2P6-01 19 2933361 2933361 G A ZNF77 3'UTR 0.75 TCGA-E2-A2P6-01 19 31767861 31767861 G A TSHZ3 Silent p.I946I 0.44 TCGA-E2-A2P6-01 19 36611614 36611614 C T TBCB Silent p.V87V 0.35 TCGA-E2-A2P6-01 19 49793936 49793936 G A SLC6A16 Silent p.L623L 0.38 TCGA-E2-A2P6-01 19 49796595 49796595 G C SLC6A16 Missense_Mutation p.R555G 0.23 deleterious(0.04) benign(0.305) TCGA-E2-A2P6-01 19 49812289 49812289 G A SLC6A16 Missense_Mutation p.A358V 0.27 tolerated(0.91) benign(0.123) TCGA-E2-A2P6-01 19 49812932 49812932 G A SLC6A16 Silent p.I284I 0.24 TCGA-E2-A2P6-01 19 49813324 49813324 G T SLC6A16 Missense_Mutation p.P225T 0.30 deleterious(0) probably_damaging(0.99) TCGA-E2-A2P6-01 19 53571914 53571914 C T ZNF160 Missense_Mutation p.E625K 0.27 deleterious(0.04) benign(0.261) TCGA-E2-A2P6-01 19 57036209 57036209 G C ZNF471 Missense_Mutation p.G258A 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-E2-A2P6-01 1 115168209 115168209 C G DENND2C Missense_Mutation p.D133H 0.33 deleterious(0.03) benign(0.027) TCGA-E2-A2P6-01 1 142620812 142620812 C A RP11-417J8.6 RNA 0.11 TCGA-E2-A2P6-01 1 144879078 144879078 C G PDE4DIP Missense_Mutation p.E1458Q 0.11 tolerated(0.06) probably_damaging(0.971) TCGA-E2-A2P6-01 1 150053517 150053517 G A VPS45 Missense_Mutation p.E261K 0.18 deleterious(0.02) benign(0.377) TCGA-E2-A2P6-01 1 152282080 152282080 C T FLG Missense_Mutation p.R1761H 0.25 possibly_damaging(0.522) TCGA-E2-A2P6-01 1 152383157 152383157 C T CRNN Missense_Mutation p.G134E 0.18 tolerated(0.13) benign(0.051) TCGA-E2-A2P6-01 1 155854221 155854221 G A SYT11 3'UTR 0.11 TCGA-E2-A2P6-01 1 156641423 156641423 C T NES Missense_Mutation p.E853K 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-E2-A2P6-01 1 159283943 159283943 G A OR10J3 Silent p.F169F 0.22 TCGA-E2-A2P6-01 1 169696916 169696916 G A SELE Nonsense_Mutation p.Q478* 0.21 TCGA-E2-A2P6-01 1 170706240 170706240 G A PRRX1 3'UTR 0.22 TCGA-E2-A2P6-01 1 186275930 186275930 C T PRG4 Missense_Mutation p.S360F 0.08 unknown(0) TCGA-E2-A2P6-01 1 19487465 19487465 C T UBR4 Silent p.K1784K 0.70 TCGA-E2-A2P6-01 1 204587686 204587686 C T LRRN2 Missense_Mutation p.E479K 0.22 deleterious(0) probably_damaging(0.996) TCGA-E2-A2P6-01 1 213446633 213446633 C T RPS6KC1 3'UTR 0.19 TCGA-E2-A2P6-01 1 220323539 220323539 G A RAB3GAP2 3'UTR 0.36 TCGA-E2-A2P6-01 1 228552692 228552692 G A OBSCN Silent p.P7241P 0.29 TCGA-E2-A2P6-01 1 229623339 229623339 G A NUP133 Nonsense_Mutation p.Q406* 0.35 TCGA-E2-A2P6-01 1 233519199 233519199 C T MLK4 3'UTR 0.25 TCGA-E2-A2P6-01 1 248128807 248128807 C T OR2AK2 Silent p.I58I 0.27 TCGA-E2-A2P6-01 1 249212291 249212291 G A PGBD2 Missense_Mutation p.R503K 0.37 tolerated(0.31) benign(0.063) TCGA-E2-A2P6-01 1 32196739 32196739 C T BAI2 Missense_Mutation p.E1348K 0.39 tolerated(0.07) probably_damaging(0.993) TCGA-E2-A2P6-01 1 33146508 33146508 G A SYNC 3'UTR 0.31 TCGA-E2-A2P6-01 1 33248074 33248074 G A YARS Missense_Mutation p.R325W 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-E2-A2P6-01 1 33328660 33328660 C T FNDC5 3'UTR 0.40 TCGA-E2-A2P6-01 1 43203908 43203908 G C CLDN19 Silent p.V155V 0.31 TCGA-E2-A2P6-01 1 53535792 53535792 G A PODN Missense_Mutation p.E137K 0.26 tolerated(0.39) possibly_damaging(0.834) TCGA-E2-A2P6-01 20 11903405 11903405 G A BTBD3 Silent p.L220L 0.43 TCGA-E2-A2P6-01 20 20599982 20599982 C T RALGAPA2 Missense_Mutation p.R493K 0.42 tolerated(0.5) benign(0.206) TCGA-E2-A2P6-01 20 45174689 45174689 G A OCSTAMP Silent p.L108L 0.42 TCGA-E2-A2P6-01 20 54941259 54941259 C T FAM210B Silent p.I165I 0.31 TCGA-E2-A2P6-01 20 629441 629441 C T SRXN1 Missense_Mutation p.E111K 0.37 tolerated(0.29) benign(0.095) TCGA-E2-A2P6-01 21 40571215 40571215 C T BRWD1 Silent p.Q1709Q 0.10 TCGA-E2-A2P6-01 22 21237758 21237758 G A SNAP29 Splice_Site p.X174_splice 0.14 TCGA-E2-A2P6-01 22 30198146 30198146 C A ASCC2 Missense_Mutation p.D469Y 0.60 deleterious(0) probably_damaging(0.995) TCGA-E2-A2P6-01 22 43524602 43524602 T - BIK Frame_Shift_Del p.F121Sfs*79 0.41 TCGA-E2-A2P6-01 2 11052864 11052864 C T KCNF1 Silent p.I104I 0.26 TCGA-E2-A2P6-01 2 136680409 136680409 T C DARS Silent p.L252L 0.28 TCGA-E2-A2P6-01 2 179463375 179463375 G A TTN Missense_Mutation p.P18990L 0.44 TCGA-E2-A2P6-01 2 179539799 179539799 G A TTN Missense_Mutation p.L11527F 0.50 TCGA-E2-A2P6-01 2 186653387 186653387 G A FSIP2 Silent p.L597L 0.67 TCGA-E2-A2P6-01 2 208986425 208986425 G A CRYGD Missense_Mutation p.S166F 0.21 deleterious(0) probably_damaging(0.913) TCGA-E2-A2P6-01 2 26150211 26150211 G A KIF3C 3'UTR 0.47 TCGA-E2-A2P6-01 2 45879318 45879318 C T PRKCE Missense_Mutation p.H27Y 0.85 deleterious(0.03) probably_damaging(0.943) TCGA-E2-A2P6-01 2 80529293 80529293 G A LRRTM1 3'UTR 0.50 TCGA-E2-A2P6-01 3 122146503 122146503 A G KPNA1 Silent p.S437S 0.39 TCGA-E2-A2P6-01 3 12226464 12226464 G C SYN2 RNA 0.45 TCGA-E2-A2P6-01 3 12226682 12226682 G C SYN2 RNA 0.41 TCGA-E2-A2P6-01 3 137800589 137800589 G C DZIP1L Silent p.L407L 0.53 TCGA-E2-A2P6-01 3 14153981 14153981 G C CHCHD4 3'UTR 0.21 TCGA-E2-A2P6-01 3 148871409 148871409 G A HPS3 Silent p.E458E 0.47 TCGA-E2-A2P6-01 3 15084312 15084312 T C NR2C2 Intron 0.41 TCGA-E2-A2P6-01 3 186968079 186968079 C T MASP1 Silent p.L350L 0.50 TCGA-E2-A2P6-01 3 19432101 19432101 G A KCNH8 Missense_Mutation p.D314N 0.57 deleterious(0) probably_damaging(1) TCGA-E2-A2P6-01 3 47484391 47484391 G A SCAP Silent p.L31L 0.33 TCGA-E2-A2P6-01 3 9791867 9791867 G A OGG1 5'UTR 0.75 TCGA-E2-A2P6-01 4 119273484 119273484 C T PRSS12 Missense_Mutation p.R131Q 0.33 tolerated_low_confidence(0.06) benign(0.033) TCGA-E2-A2P6-01 4 159048543 159048543 C T FAM198B 3'UTR 0.39 TCGA-E2-A2P6-01 4 3526751 3526751 C T LRPAP1 Missense_Mutation p.E78K 0.29 deleterious(0.04) benign(0.224) TCGA-E2-A2P6-01 4 46737164 46737164 G A COX7B2 Nonsense_Mutation p.Q16* 0.45 TCGA-E2-A2P6-01 4 55161295 55161295 G A PDGFRA Silent p.S1042S 0.28 TCGA-E2-A2P6-01 4 56301520 56301520 C G CLOCK 3'UTR 0.50 TCGA-E2-A2P6-01 4 56765964 56765964 G A EXOC1 Missense_Mutation p.E751K 0.45 tolerated(0.28) benign(0.023) TCGA-E2-A2P6-01 4 75719749 75719749 G C BTC 5'UTR 0.31 TCGA-E2-A2P6-01 4 85888197 85888197 C G WDFY3 5'Flank 0.45 TCGA-E2-A2P6-01 5 118728890 118728890 G C TNFAIP8 Missense_Mutation p.E137D 0.45 tolerated(1) benign(0.002) TCGA-E2-A2P6-01 5 140554697 140554697 G T PCDHB7 Nonsense_Mutation p.E761* 0.16 TCGA-E2-A2P6-01 5 141019951 141019951 C T FCHSD1 3'UTR 0.41 TCGA-E2-A2P6-01 5 154173389 154173390 - C LARP1 Frame_Shift_Ins p.T226Hfs*19 0.44 TCGA-E2-A2P6-01 5 167957371 167957371 G A FBLL1 Missense_Mutation p.E288K 0.52 deleterious(0.04) benign(0.116) TCGA-E2-A2P6-01 5 175536140 175536140 C T FAM153B Nonsense_Mutation p.Q245* 0.39 TCGA-E2-A2P6-01 5 179078576 179078576 G A AC136604.1 Missense_Mutation p.R20H 0.32 tolerated(0.26) benign(0) TCGA-E2-A2P6-01 5 72112537 72112537 G A TNPO1 5'UTR 0.27 TCGA-E2-A2P6-01 5 74801856 74801857 - T COL4A3BP Frame_Shift_Ins p.T189Nfs*12 0.30 TCGA-E2-A2P6-01 5 82868278 82868278 C T VCAN Missense_Mutation p.S3260F 0.36 deleterious(0) probably_damaging(0.958) TCGA-E2-A2P6-01 6 100988257 100988257 C T ASCC3 Missense_Mutation p.E1853K 0.27 tolerated(0.49) benign(0.003) TCGA-E2-A2P6-01 6 111583513 111583513 G A KIAA1919 Silent p.V27V 0.43 TCGA-E2-A2P6-01 6 167587418 167587418 G A TCP10L2 Missense_Mutation p.A108T 0.19 tolerated(0.24) benign(0.374) TCGA-E2-A2P6-01 6 28891037 28891037 G A TRIM27 Missense_Mutation p.R125C 0.25 deleterious(0) benign(0.385) TCGA-E2-A2P6-01 6 42620364 42620364 C T UBR2 Missense_Mutation p.S917L 0.10 deleterious(0) benign(0.403) TCGA-E2-A2P6-01 6 42934590 42934590 C T PEX6 Missense_Mutation p.V631M 0.35 tolerated(0.05) possibly_damaging(0.655) TCGA-E2-A2P6-01 6 6152107 6152107 G A F13A1 Nonsense_Mutation p.R662* 0.60 TCGA-E2-A2P6-01 6 7189489 7189489 C T RREB1 Missense_Mutation p.S120F 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A2P6-01 7 100860012 100860012 G A PLOD3 Silent p.F55F 0.45 TCGA-E2-A2P6-01 7 143573620 143573620 C T FAM115A Missense_Mutation p.E28K 0.35 tolerated(0.14) possibly_damaging(0.562) TCGA-E2-A2P6-01 7 154863224 154863224 C T HTR5A Silent p.T205T 0.31 TCGA-E2-A2P6-01 7 27181309 27181309 C G HOXA5 3'UTR 0.46 TCGA-E2-A2P6-01 7 45928353 45928353 C T IGFBP1 Silent p.S34S 0.40 TCGA-E2-A2P6-01 7 62752455 62752455 G A ZNF733P RNA 0.30 TCGA-E2-A2P6-01 7 82467655 82467655 G A PCLO Nonsense_Mutation p.Q4701* 0.25 TCGA-E2-A2P6-01 8 11281539 11281539 G A FAM167A 3'UTR 0.45 TCGA-E2-A2P6-01 8 113516056 113516056 T A CSMD3 Silent p.G1682G 0.47 TCGA-E2-A2P6-01 8 113585757 113585757 C T CSMD3 Missense_Mutation p.D1339N 0.33 tolerated(0.37) benign(0.123) TCGA-E2-A2P6-01 8 11995160 11995160 G C USP17L2 Silent p.L370L 0.22 TCGA-E2-A2P6-01 8 38239470 38239470 T C WHSC1L1 5'UTR 0.10 TCGA-E2-A2P6-01 8 42294814 42294814 C T SLC20A2 Missense_Mutation p.D406N 0.11 tolerated(0.19) benign(0.16) TCGA-E2-A2P6-01 8 97263176 97263176 T G MTERFD1 Missense_Mutation p.N212T 0.49 deleterious(0) probably_damaging(1) TCGA-E2-A2P6-01 9 107521628 107521628 T C NIPSNAP3A 3'UTR 0.43 TCGA-E2-A2P6-01 9 34256034 34256034 G A KIF24 Missense_Mutation p.P1191S 0.40 tolerated(0.13) benign(0.023) TCGA-E2-A2P6-01 9 711674 711674 C T KANK1 Missense_Mutation p.S303L 0.32 deleterious(0.03) benign(0.03) TCGA-E2-A2P6-01 9 73233936 73233936 C T TRPM3 Silent p.L723L 0.35 TCGA-E2-A2P6-01 X 107403829 107403829 C T COL4A6 Missense_Mutation p.M1464I 0.30 benign(0.019) TCGA-E2-A2P6-01 X 154158487 154158487 A C F8 Missense_Mutation p.L1193R 0.48 deleterious(0.03) benign(0.018) TCGA-E2-A2P6-01 X 30873431 30873431 C T TAB3 Silent p.L117L 0.22 TCGA-E2-A2P6-01 X 40514245 40514245 G A MED14 Missense_Mutation p.P1347L 0.45 tolerated(0.27) possibly_damaging(0.796) TCGA-E2-A2P6-01 X 41555198 41555198 C G GPR34 Missense_Mutation p.I104M 0.44 tolerated(0.07) probably_damaging(0.969) TCGA-E2-A2P6-01 X 41555705 41555705 C T GPR34 Silent p.I273I 0.29 TCGA-E2-A2P6-01 X 47919407 47919407 T A ZNF630 Missense_Mutation p.I142F 0.40 tolerated(0.2) benign(0.001) TCGA-E2-A2P6-01 X 53262175 53262175 C T IQSEC2 3'UTR 0.61 TCGA-E2-A2P6-01 X 73050952 73050952 G C XIST RNA 0.39 TCGA-E2-A56Z-01 10 103717404 103717404 C A C10orf76 Intron 0.50 TCGA-E2-A56Z-01 10 75608353 75608353 G T CAMK2G Missense_Mutation p.P178T 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-E2-A56Z-01 11 118239438 118239438 T A UBE4A Missense_Mutation p.F72I 0.58 tolerated(0.56) benign(0.318) TCGA-E2-A56Z-01 11 122929479 122929479 G A HSPA8 Silent p.L461L 0.72 TCGA-E2-A56Z-01 11 17547981 17547981 C T USH1C Missense_Mutation p.R196Q 0.67 tolerated(0.11) benign(0.001) TCGA-E2-A56Z-01 11 40136396 40136396 C T LRRC4C Missense_Mutation p.D483N 0.17 tolerated(0.39) benign(0.003) TCGA-E2-A56Z-01 11 73364048 73364048 A C PLEKHB1 Missense_Mutation p.N127H 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-E2-A56Z-01 11 73390734 73390734 C T RAB6A Missense_Mutation p.G176E 0.25 tolerated(0.06) possibly_damaging(0.877) TCGA-E2-A56Z-01 11 73390735 73390735 C T RAB6A Missense_Mutation p.G176R 0.25 deleterious(0) probably_damaging(0.915) TCGA-E2-A56Z-01 11 73390744 73390744 C T RAB6A Missense_Mutation p.A173T 0.25 tolerated(0.07) benign(0.002) TCGA-E2-A56Z-01 11 73850818 73850818 G C C2CD3 Missense_Mutation p.P180R 0.33 deleterious(0) probably_damaging(0.943) TCGA-E2-A56Z-01 12 109879456 109879456 G A MYO1H Missense_Mutation p.G843R 0.26 deleterious(0) probably_damaging(0.962) TCGA-E2-A56Z-01 12 121691243 121691243 T G CAMKK2 Missense_Mutation p.K314Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-E2-A56Z-01 12 12795841 12795841 G A CREBL2 3'UTR 0.11 TCGA-E2-A56Z-01 12 39763624 39763624 T C KIF21A Silent p.K119K 0.10 TCGA-E2-A56Z-01 13 96684189 96684189 C T UGGT2 Nonsense_Mutation p.W65* 0.33 TCGA-E2-A56Z-01 14 20389502 20389502 T C OR4K5 Missense_Mutation p.V246A 0.16 deleterious(0) probably_damaging(0.912) TCGA-E2-A56Z-01 15 28501279 28501279 G A HERC2 Missense_Mutation p.A901V 0.30 probably_damaging(0.943) TCGA-E2-A56Z-01 15 34393857 34393857 T C EMC7 Missense_Mutation p.I62V 0.37 tolerated(0.73) benign(0.005) TCGA-E2-A56Z-01 15 74753008 74753008 C G UBL7 Splice_Site 0.19 TCGA-E2-A56Z-01 17 52993232 52993232 C T TOM1L1 Intron 0.08 TCGA-E2-A56Z-01 18 46284511 46284511 G A CTIF Missense_Mutation p.R269H 0.15 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-E2-A56Z-01 18 77897403 77897403 A T ADNP2 3'UTR 0.17 TCGA-E2-A56Z-01 19 12035970 12035970 G A ZNF763 5'UTR 0.33 TCGA-E2-A56Z-01 19 40827096 40827096 C T C19orf47 3'UTR 0.16 TCGA-E2-A56Z-01 19 53770436 53770436 G A VN1R4 Silent p.N161N 0.35 TCGA-E2-A56Z-01 1 159826348 159826348 G C VSIG8 Silent p.G246G 0.15 TCGA-E2-A56Z-01 1 206821748 206821748 T G DYRK3 Missense_Mutation p.L402R 0.45 deleterious(0) probably_damaging(0.999) TCGA-E2-A56Z-01 1 233518204 233518204 G A MLK4 Missense_Mutation p.R953H 0.65 deleterious(0.03) benign(0.003) TCGA-E2-A56Z-01 1 26669642 26669642 G T AIM1L Missense_Mutation p.F116L 0.32 tolerated(0.96) benign(0.001) TCGA-E2-A56Z-01 20 35431404 35431404 T C SOGA1 Missense_Mutation p.Y1065C 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A56Z-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.14 deleterious(0) probably_damaging(0.96) TCGA-E2-A56Z-01 2 220040346 220040346 C T CNPPD1 Missense_Mutation p.R76Q 0.68 deleterious(0.01) possibly_damaging(0.648) TCGA-E2-A56Z-01 2 220099673 220099673 A G ANKZF1 Missense_Mutation p.K444E 0.23 tolerated(0.16) benign(0.077) TCGA-E2-A56Z-01 2 233404776 233404776 G A CHRNG Missense_Mutation p.A44T 0.17 tolerated(0.12) benign(0.123) TCGA-E2-A56Z-01 2 44132917 44132917 G A LRPPRC Missense_Mutation p.A1093V 0.12 deleterious(0.05) probably_damaging(0.969) TCGA-E2-A56Z-01 3 126071710 126071710 A G KLF15 Missense_Mutation p.V19A 0.46 tolerated_low_confidence(0.27) benign(0.004) TCGA-E2-A56Z-01 3 180694861 180694861 T C FXR1 3'UTR 0.16 TCGA-E2-A56Z-01 3 51432047 51432047 C G RBM15B 3'UTR 0.28 TCGA-E2-A56Z-01 3 52473711 52473711 C G SEMA3G Missense_Mutation p.E484D 0.36 deleterious(0.01) probably_damaging(0.921) TCGA-E2-A56Z-01 3 97705686 97705686 G - GABRR3 Frame_Shift_Del p.S416Afs*? 0.42 TCGA-E2-A56Z-01 4 83931658 83931658 C T LIN54 5'UTR 0.11 TCGA-E2-A56Z-01 5 140176412 140176412 G A PCDHA2 Silent p.P621P 0.10 TCGA-E2-A56Z-01 5 140516842 140516842 C T PCDHB5 Missense_Mutation p.T609M 0.29 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-E2-A56Z-01 5 145214806 145214806 G A PRELID2 Silent p.V3V 0.16 TCGA-E2-A56Z-01 5 167589717 167589717 G A TENM2 Missense_Mutation p.V842I 0.22 tolerated(0.35) possibly_damaging(0.797) TCGA-E2-A56Z-01 5 32074112 32074112 C T PDZD2 Missense_Mutation p.A967V 0.22 deleterious(0.01) benign(0.293) TCGA-E2-A56Z-01 6 137191068 137191068 G T PEX7 Missense_Mutation p.G225V 0.24 tolerated(0.95) benign(0.05) TCGA-E2-A56Z-01 6 76063403 76063403 T A FILIP1 Missense_Mutation p.T161S 0.62 tolerated(0.27) probably_damaging(0.999) TCGA-E2-A56Z-01 6 79698009 79698011 GAT AA PHIP Frame_Shift_Del p.N792Ifs*21 0.11 TCGA-E2-A56Z-01 7 38908841 38908841 C T VPS41 Missense_Mutation p.E25K 0.36 deleterious(0.01) possibly_damaging(0.905) TCGA-E2-A56Z-01 8 28309761 28309761 C T FBXO16 Missense_Mutation p.G247E 0.10 tolerated(0.39) benign(0.104) TCGA-E2-A56Z-01 8 92261960 92261960 G A SLC26A7 Nonsense_Mutation p.W27* 0.06 TCGA-E2-A56Z-01 9 114874096 114874096 C T SUSD1 Missense_Mutation p.D337N 0.28 tolerated(0.24) benign(0.027) TCGA-E2-A56Z-01 9 123742443 123742443 C T C5 Silent p.A1192A 0.09 TCGA-E2-A56Z-01 9 128002548 128002548 A G HSPA5 Missense_Mutation p.I132T 0.61 tolerated_low_confidence(0.13) benign(0.008) TCGA-E2-A56Z-01 9 137593087 137593087 A G COL5A1 Missense_Mutation p.T188A 0.10 possibly_damaging(0.867) TCGA-E2-A56Z-01 X 114239780 114239780 G T IL13RA2 Missense_Mutation p.P366T 0.24 tolerated(0.34) benign(0.005) TCGA-E2-A56Z-01 X 150565765 150565765 C G VMA21 5'UTR 0.35 TCGA-E2-A56Z-01 X 21393066 21393066 G A CNKSR2 Silent p.V17V 0.07 TCGA-E2-A56Z-01 X 63412663 63412663 G A AMER1 Silent p.G168G 0.23 TCGA-E2-A56Z-01 X 68060784 68060784 G A EFNB1 3'UTR 0.29 TCGA-E2-A570-01 10 15253773 15253773 T - FAM171A1 3'UTR 0.47 TCGA-E2-A570-01 10 8111497 8111497 G A GATA3 Nonsense_Mutation p.W329* 0.20 TCGA-E2-A570-01 10 85994102 85994102 G A LRIT1 Nonsense_Mutation p.R208* 0.31 TCGA-E2-A570-01 11 1576206 1576206 T C DUSP8 3'UTR 0.31 TCGA-E2-A570-01 11 85375221 85375222 - T CREBZF Frame_Shift_Ins p.S234Efs*70 0.25 TCGA-E2-A570-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.58 deleterious(0) probably_damaging(0.999) TCGA-E2-A570-01 14 23894537 23894537 G A MYH7 Nonsense_Mutation p.R793* 0.38 TCGA-E2-A570-01 15 31206241 31206241 T G FAN1 Missense_Mutation p.S586R 0.21 tolerated(0.46) benign(0.001) TCGA-E2-A570-01 15 57929916 57929916 A G GCOM1 Silent p.Q319Q 0.38 TCGA-E2-A570-01 15 78789556 78789556 C G IREB2 Missense_Mutation p.P895R 0.29 deleterious(0.03) possibly_damaging(0.899) TCGA-E2-A570-01 16 1116376 1116376 G A RP11-161M6.5 RNA 0.18 TCGA-E2-A570-01 16 89981134 89981134 T G MC1R 5'Flank 0.43 TCGA-E2-A570-01 17 7222464 7222464 C T NEURL4 Missense_Mutation p.A1197T 0.33 tolerated(0.79) benign(0.025) TCGA-E2-A570-01 1 16254905 16254905 C T SPEN Nonsense_Mutation p.R724* 0.22 TCGA-E2-A570-01 1 226924426 226924426 C T ITPKB Missense_Mutation p.G245E 0.12 tolerated_low_confidence(0.12) benign(0.004) TCGA-E2-A570-01 1 25810703 25810703 C G TMEM57 Silent p.T417T 0.39 TCGA-E2-A570-01 1 54692427 54692427 A C SSBP3 3'UTR 0.29 TCGA-E2-A570-01 20 55204370 55204370 C T TFAP2C 5'UTR 0.46 TCGA-E2-A570-01 20 57429324 57429324 C T GNAS Missense_Mutation p.P335L 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-E2-A570-01 2 108443541 108443541 G C RGPD4 Missense_Mutation p.K24N 0.34 deleterious(0.01) benign(0.001) TCGA-E2-A570-01 2 43776496 43776497 - GCTT THADA Frame_Shift_Ins p.R987Kfs*9 0.20 TCGA-E2-A570-01 3 58486742 58486742 T C KCTD6 Missense_Mutation p.Y33H 0.32 deleterious(0) probably_damaging(0.99) TCGA-E2-A570-01 3 72866534 72866534 C A SHQ1 Silent p.V243V 0.31 TCGA-E2-A570-01 5 132018264 132018264 A - IL4 Frame_Shift_Del p.K150Sfs*10 0.15 TCGA-E2-A570-01 5 167182054 167182054 C T TENM2 Intron 0.27 TCGA-E2-A570-01 5 175309347 175309347 G A CPLX2 3'UTR 0.32 TCGA-E2-A570-01 6 32372957 32372957 C T BTNL2 Silent p.E62E 0.24 TCGA-E2-A570-01 6 42195992 42195992 A G TRERF1 3'UTR 0.12 TCGA-E2-A570-01 7 62809694 62809694 G A AC006455.1 5'UTR 0.25 TCGA-E2-A570-01 7 81636994 81636994 C T CACNA2D1 Splice_Site p.X480_splice 0.38 TCGA-E2-A570-01 8 142175384 142175384 G A DENND3 Missense_Mutation p.D437N 0.30 tolerated(0.22) benign(0.049) TCGA-E2-A570-01 8 74922237 74922237 G A LY96 Silent p.R68R 0.29 TCGA-E2-A570-01 9 135139476 135139498 CAGAGGCTCAGGTGTTAAGGATG - SETX 3'UTR 0.47 TCGA-E2-A570-01 X 112021679 112021680 - A AMOT 3'UTR 0.52 TCGA-E2-A570-01 X 48462671 48462671 A G WDR13 Missense_Mutation p.N389S 0.13 tolerated(0.5) benign(0.028) TCGA-E2-A570-01 X 78618098 78618098 C G ITM2A Missense_Mutation p.E178Q 0.09 deleterious(0.01) possibly_damaging(0.748) TCGA-E2-A572-01 10 93695421 93695421 C A BTAF1 Missense_Mutation p.R8S 0.06 deleterious(0) probably_damaging(0.995) TCGA-E2-A572-01 11 104872859 104872859 G A CASP5 Missense_Mutation p.H218Y 0.44 tolerated(0.12) benign(0.155) TCGA-E2-A572-01 11 13513788 13513788 T C PTH 3'UTR 0.39 TCGA-E2-A572-01 11 35454041 35454041 G A PAMR1 Nonsense_Mutation p.R693* 0.32 TCGA-E2-A572-01 11 7716393 7716393 G C OVCH2 Missense_Mutation p.L437V 0.17 tolerated(0.08) possibly_damaging(0.558) TCGA-E2-A572-01 12 6806845 6806845 C T PIANP Missense_Mutation p.R44H 0.48 deleterious_low_confidence(0) unknown(0) TCGA-E2-A572-01 12 88487598 88487598 C T CEP290 Silent p.S1086S 0.07 TCGA-E2-A572-01 13 110845222 110845222 C T COL4A1 Missense_Mutation p.G474R 0.27 probably_damaging(0.989) TCGA-E2-A572-01 14 94849244 94849244 T C SERPINA1 Missense_Mutation p.I111V 0.55 tolerated(0.71) benign(0.004) TCGA-E2-A572-01 16 71763542 71763542 C G AP1G1 3'Flank 0.31 TCGA-E2-A572-01 17 40834912 40834912 A G CNTNAP1 Missense_Mutation p.Y22C 0.33 tolerated(0.17) benign(0.087) TCGA-E2-A572-01 17 66250705 66250705 T A AMZ2 Nonsense_Mutation p.C249* 0.53 TCGA-E2-A572-01 19 15230298 15230298 C T ILVBL Missense_Mutation p.R282Q 0.09 tolerated(0.23) benign(0.107) TCGA-E2-A572-01 19 41248131 41248131 T C C19orf54 3'UTR 0.60 TCGA-E2-A572-01 19 9049946 9049946 T C MUC16 Missense_Mutation p.N10562S 0.06 benign(0) TCGA-E2-A572-01 1 151377630 151377630 G A POGZ Missense_Mutation p.S1294F 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-E2-A572-01 1 21904013 21904013 G A ALPL Missense_Mutation p.V483M 0.26 deleterious(0.01) possibly_damaging(0.584) TCGA-E2-A572-01 1 236368473 236368473 T C GPR137B Silent p.Y338Y 0.27 TCGA-E2-A572-01 1 2535710 2535710 G A MMEL1 Missense_Mutation p.A276V 0.43 deleterious(0) probably_damaging(0.992) TCGA-E2-A572-01 21 46066745 46066745 T C KRTAP10-11 Missense_Mutation p.S124P 0.37 tolerated(0.32) unknown(0) TCGA-E2-A572-01 22 23055444 23055444 C T IGLV3-21 Missense_Mutation p.T36M 0.18 tolerated(0.09) benign(0.256) TCGA-E2-A572-01 3 164907441 164907441 T C SLITRK3 Missense_Mutation p.K393R 0.26 deleterious(0.01) probably_damaging(0.934) TCGA-E2-A572-01 3 183883251 183883251 C G DVL3 Silent p.L245L 0.36 TCGA-E2-A572-01 4 119554844 119554844 C G RP11-384K6.6 RNA 0.26 TCGA-E2-A572-01 6 131949150 131949150 C A MED23 Splice_Site p.X13_splice 0.50 TCGA-E2-A572-01 6 36298440 36298440 G C C6orf222 Missense_Mutation p.P10A 0.23 deleterious(0.02) possibly_damaging(0.908) TCGA-E2-A572-01 7 151851222 151851222 G T KMT2C Nonsense_Mutation p.S4050* 0.19 TCGA-E2-A572-01 9 109685809 109685809 G A ZNF462 Missense_Mutation p.V49M 0.30 possibly_damaging(0.623) TCGA-E2-A572-01 9 138712975 138712975 G A CAMSAP1 Missense_Mutation p.R1178W 0.36 deleterious(0) possibly_damaging(0.772) TCGA-E2-A573-01 10 119811678 119811684 AGTAAGA - CASC2 RNA 0.44 TCGA-E2-A573-01 10 25887238 25887238 C T GPR158 Nonsense_Mutation p.R895* 0.33 TCGA-E2-A573-01 10 70190369 70190369 T C DNA2 Missense_Mutation p.T764A 0.25 deleterious(0) possibly_damaging(0.769) TCGA-E2-A573-01 11 101325833 101325833 C T TRPC6 Splice_Site p.X829_splice 0.37 TCGA-E2-A573-01 11 113619011 113619011 T C ZW10 Missense_Mutation p.T353A 0.31 tolerated(0.22) benign(0.012) TCGA-E2-A573-01 11 16760272 16760272 G T C11orf58 5'UTR 0.41 TCGA-E2-A573-01 11 65107855 65107855 G T DPF2 Splice_Site p.X11_splice 0.22 TCGA-E2-A573-01 12 119772957 119772957 G C CCDC60 5'UTR 0.19 TCGA-E2-A573-01 12 89742136 89742136 T G DUSP6 3'UTR 0.13 TCGA-E2-A573-01 12 93245024 93245024 C T EEA1 Missense_Mutation p.E221K 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A573-01 13 25875893 25875893 C T NUPL1 5'UTR 0.32 TCGA-E2-A573-01 13 78338008 78338008 A C SLAIN1 3'Flank 0.57 TCGA-E2-A573-01 14 65249163 65249163 T C SPTB Missense_Mutation p.K1371E 0.08 deleterious(0) possibly_damaging(0.606) TCGA-E2-A573-01 14 81651922 81651922 G C GTF2A1 Missense_Mutation p.Q326E 0.27 deleterious(0.04) possibly_damaging(0.848) TCGA-E2-A573-01 16 19516399 19516399 G C GDE1 Missense_Mutation p.R218G 0.18 tolerated(0.17) benign(0.152) TCGA-E2-A573-01 16 4931983 4931983 C T UBN1 3'UTR 0.13 TCGA-E2-A573-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.26 deleterious(0) probably_damaging(1) TCGA-E2-A573-01 17 76392449 76392449 C G PGS1 Missense_Mutation p.P132A 0.22 tolerated(0.35) benign(0.026) TCGA-E2-A573-01 19 14517940 14517954 ATCTTCGACGATCGG - CD97 In_Frame_Del p.I759_R763del 0.35 TCGA-E2-A573-01 19 37734543 37734543 C G ZNF383 Missense_Mutation p.Q469E 0.43 tolerated(0.07) benign(0) TCGA-E2-A573-01 19 42853696 42853696 C T MEGF8 Missense_Mutation p.R715W 0.32 deleterious(0.02) benign(0.378) TCGA-E2-A573-01 19 43262237 43262237 T - PSG8 Frame_Shift_Del p.K209Sfs*15 0.17 TCGA-E2-A573-01 19 58946286 58946286 G A ZNF132 Silent p.D175D 0.41 TCGA-E2-A573-01 19 6432160 6432160 T A SLC25A41 Missense_Mutation p.N88I 0.09 tolerated(0.09) possibly_damaging(0.629) TCGA-E2-A573-01 19 7584511 7584511 C T ZNF358 Missense_Mutation p.T128I 0.25 tolerated(0.06) benign(0.368) TCGA-E2-A573-01 1 10707860 10707862 CTC - CASZ1 In_Frame_Del p.E1165del 0.26 TCGA-E2-A573-01 1 154062034 154062034 G C NUP210L Missense_Mutation p.L742V 0.15 tolerated(0.18) probably_damaging(0.998) TCGA-E2-A573-01 1 163044570 163044570 A G RGS4 3'UTR 0.19 TCGA-E2-A573-01 1 219347310 219347310 C - LYPLAL1 Frame_Shift_Del p.L27Cfs*11 0.09 TCGA-E2-A573-01 1 225332281 225332281 C A DNAH14 Missense_Mutation p.A642D 0.15 deleterious(0) possibly_damaging(0.897) TCGA-E2-A573-01 1 225548426 225548426 A T DNAH14 Missense_Mutation p.L3847F 0.20 benign(0.15) TCGA-E2-A573-01 1 226252077 226252077 C G H3F3A Missense_Mutation p.R9G 0.12 deleterious_low_confidence(0.05) benign(0) TCGA-E2-A573-01 1 59127079 59127079 T C MYSM1 Missense_Mutation p.S757G 0.23 tolerated(0.56) benign(0.008) TCGA-E2-A573-01 20 43996174 43996174 G T SYS1 3'UTR 0.21 TCGA-E2-A573-01 20 44108623 44108623 C G WFDC2 Missense_Mutation p.Q89E 0.11 tolerated(0.08) benign(0.105) TCGA-E2-A573-01 21 34072327 34072327 G C SYNJ1 Silent p.S139S 0.22 TCGA-E2-A573-01 21 34134628 34134628 C A PAXBP1 Missense_Mutation p.G217V 0.24 deleterious(0) probably_damaging(0.998) TCGA-E2-A573-01 21 40571052 40571052 C G BRWD1 Missense_Mutation p.D1764H 0.14 deleterious_low_confidence(0.02) benign(0.157) TCGA-E2-A573-01 22 21055440 21055440 C T TMEM191A RNA 0.12 TCGA-E2-A573-01 2 10915114 10915114 C T ATP6V1C2 Missense_Mutation p.R248C 0.14 deleterious(0.01) probably_damaging(1) TCGA-E2-A573-01 2 131116998 131116998 C T PTPN18 Missense_Mutation p.A103V 0.13 deleterious(0) probably_damaging(0.979) TCGA-E2-A573-01 2 136567102 136567102 G T LCT Missense_Mutation p.P939T 0.21 deleterious(0.04) possibly_damaging(0.702) TCGA-E2-A573-01 2 167301344 167301344 G A SCN7A Silent p.N518N 0.20 TCGA-E2-A573-01 2 191208573 191208573 G A INPP1 5'UTR 0.50 TCGA-E2-A573-01 2 231102991 231102991 G T SP140 Nonsense_Mutation p.E101* 0.17 TCGA-E2-A573-01 2 42557776 42557776 C T EML4 3'UTR 0.10 TCGA-E2-A573-01 3 124731767 124731767 G C HEG1 Missense_Mutation p.P886A 0.18 deleterious(0.04) probably_damaging(0.989) TCGA-E2-A573-01 3 12977712 12977712 C A IQSEC1 Missense_Mutation p.Q282H 0.22 tolerated(0.07) benign(0.077) TCGA-E2-A573-01 3 150931390 150931390 C T P2RY14 Missense_Mutation p.V239M 0.20 tolerated(0.68) benign(0.014) TCGA-E2-A573-01 3 167525056 167525056 T C SERPINI1 Silent p.D302D 0.19 TCGA-E2-A573-01 3 193062796 193062796 G A ATP13A5 Silent p.D270D 0.08 TCGA-E2-A573-01 3 52442072 52442072 T C BAP1 Missense_Mutation p.T93A 0.44 deleterious(0) possibly_damaging(0.906) TCGA-E2-A573-01 4 103518743 103518743 C T NFKB1 Missense_Mutation p.A521V 0.09 tolerated(0.06) probably_damaging(0.977) TCGA-E2-A573-01 4 15009075 15009075 G A CPEB2 Silent p.L603L 0.29 TCGA-E2-A573-01 6 111982553 111982553 T C FYN 3'UTR 0.15 TCGA-E2-A573-01 6 13980203 13980203 T G RNF182 3'UTR 0.24 TCGA-E2-A573-01 6 27277899 27277899 A T POM121L2 Missense_Mutation p.I684N 0.17 deleterious(0) probably_damaging(0.916) TCGA-E2-A573-01 6 32123479 32123479 C T PPT2 Missense_Mutation p.R124W 0.27 deleterious(0) probably_damaging(0.987) TCGA-E2-A573-01 6 33694544 33694544 G A IP6K3 Missense_Mutation p.R185C 0.27 deleterious(0) probably_damaging(1) TCGA-E2-A573-01 7 147914614 147914614 C A CNTNAP2 Missense_Mutation p.T1082N 0.15 tolerated(1) benign(0) TCGA-E2-A573-01 8 133111199 133111199 T A HHLA1 Silent p.A106A 0.19 TCGA-E2-A573-01 8 13965707 13965707 C T SGCZ Silent p.T195T 0.11 TCGA-E2-A573-01 8 143994726 143994726 G A CYP11B2 Missense_Mutation p.R366W 0.51 tolerated(0.05) possibly_damaging(0.479) TCGA-E2-A573-01 8 29195879 29195879 T A DUSP4 Missense_Mutation p.Y240F 0.12 tolerated(0.35) benign(0.126) TCGA-E2-A573-01 8 75147120 75147120 C G JPH1 3'UTR 0.11 TCGA-E2-A573-01 9 110247636 110247636 G C KLF4 3'UTR 0.27 TCGA-E2-A573-01 9 131733098 131733098 C T NUP188 Missense_Mutation p.A325V 0.44 deleterious(0.01) possibly_damaging(0.63) TCGA-E2-A573-01 9 131864751 131864751 C T CRAT Silent p.K186K 0.23 TCGA-E2-A573-01 X 140996554 140996554 G A MAGEC1 Missense_Mutation p.D1122N 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-E2-A573-01 X 148797955 148797955 G A MAGEA11 Missense_Mutation p.C270Y 0.21 tolerated(1) benign(0.374) TCGA-E2-A573-01 X 151899720 151899720 T C MAGEA12 3'UTR 0.29 TCGA-E2-A573-01 X 153713698 153713698 C A UBL4A 3'UTR 0.11 TCGA-E2-A573-01 X 154005112 154005112 A G DKC1 Silent p.K505K 0.15 TCGA-E2-A573-01 X 19984272 19984272 T A CXorf23 Silent p.I179I 0.13 TCGA-E2-A573-01 X 3227573 3227573 T G MXRA5 3'UTR 0.31 TCGA-E2-A573-01 X 47089063 47089063 C T CDK16 3'UTR 0.20 TCGA-E2-A573-01 X 69283594 69283594 G C OTUD6A 3'UTR 0.17 TCGA-E2-A574-01 10 18803948 18803948 C T CACNB2 Intron 0.11 TCGA-E2-A574-01 10 51568347 51568347 C T NCOA4 5'UTR 0.60 TCGA-E2-A574-01 10 5567450 5567450 C T CALML3 Silent p.D134D 0.12 TCGA-E2-A574-01 10 70728850 70728850 G C DDX21 Missense_Mutation p.K403N 0.27 tolerated(0.08) benign(0.004) TCGA-E2-A574-01 10 74096348 74096348 C G DNAJB12 Missense_Mutation p.E348Q 0.12 deleterious(0) probably_damaging(0.982) TCGA-E2-A574-01 10 79745033 79745033 G A POLR3A Missense_Mutation p.T1046I 0.48 deleterious(0) probably_damaging(0.999) TCGA-E2-A574-01 10 93104 93104 C T TUBB8 Missense_Mutation p.E410K 0.36 deleterious_low_confidence(0.02) benign(0.041) TCGA-E2-A574-01 11 117780640 117780640 C T TMPRSS13 Silent p.A330A 0.33 TCGA-E2-A574-01 11 118343199 118343199 G A KMT2A Missense_Mutation p.R442Q 0.32 probably_damaging(0.945) TCGA-E2-A574-01 11 120852906 120852906 G A GRIK4 Nonsense_Mutation p.W829* 0.19 TCGA-E2-A574-01 11 124755057 124755057 A G ROBO4 Silent p.L961L 0.29 TCGA-E2-A574-01 11 4936482 4936482 C T OR51G2 Missense_Mutation p.V138I 0.39 deleterious(0.01) benign(0.001) TCGA-E2-A574-01 11 55419048 55419048 G A OR4S2 Silent p.L223L 0.20 TCGA-E2-A574-01 11 55579451 55579451 G T OR5L1 Missense_Mutation p.R170I 0.23 deleterious(0.04) possibly_damaging(0.786) TCGA-E2-A574-01 11 59554574 59554574 A G STX3 Missense_Mutation p.Y60C 0.74 deleterious(0) probably_damaging(0.964) TCGA-E2-A574-01 11 64012163 64012163 G C PPP1R14B 3'UTR 0.12 TCGA-E2-A574-01 11 65658674 65658674 C T CCDC85B Silent p.L140L 0.27 TCGA-E2-A574-01 11 75508201 75508201 A T DGAT2 Splice_Site p.X212_splice 0.14 TCGA-E2-A574-01 11 87034195 87034195 C T TMEM135 3'Flank 0.33 TCGA-E2-A574-01 11 89935458 89935458 G A CHORDC1 3'UTR 0.38 TCGA-E2-A574-01 12 121018945 121018945 C T POP5 Missense_Mutation p.A46T 0.08 tolerated(0.31) possibly_damaging(0.53) TCGA-E2-A574-01 12 25055971 25055971 G A AC026310.1 Missense_Mutation p.A150T 0.45 tolerated_low_confidence(0.52) possibly_damaging(0.691) TCGA-E2-A574-01 12 42629602 42629602 G T YAF2 Intron 0.63 TCGA-E2-A574-01 12 58162854 58162854 G A METTL1 Silent p.F252F 0.17 TCGA-E2-A574-01 12 69158496 69158496 C T SLC35E3 Silent p.F256F 0.12 TCGA-E2-A574-01 13 108884649 108884649 T C ABHD13 3'UTR 0.63 TCGA-E2-A574-01 13 21013828 21013828 A - CRYL1 Frame_Shift_Del p.D114Efs*4 0.20 TCGA-E2-A574-01 13 70681388 70681388 G C KLHL1 Silent p.L148L 0.10 TCGA-E2-A574-01 14 104500401 104500401 C T TDRD9 Missense_Mutation p.A1205V 0.80 deleterious(0.02) benign(0.251) TCGA-E2-A574-01 14 105173281 105173281 C T INF2 Missense_Mutation p.S293L 0.45 deleterious(0) probably_damaging(0.983) TCGA-E2-A574-01 14 106053516 106053516 C T IGHA2 Missense_Mutation p.E261K 0.48 tolerated(0.2) benign(0.068) TCGA-E2-A574-01 14 21486165 21486165 G A NDRG2 Silent p.F310F 0.23 TCGA-E2-A574-01 14 91681803 91681803 C G C14orf159 Nonsense_Mutation p.S540* 0.34 TCGA-E2-A574-01 15 28436380 28436380 C G HERC2 Missense_Mutation p.R2821P 0.20 probably_damaging(0.977) TCGA-E2-A574-01 15 37100841 37100841 A C C15orf41 3'UTR 0.40 TCGA-E2-A574-01 15 65370332 65370332 C T KBTBD13 Silent p.L393L 0.29 TCGA-E2-A574-01 15 71302313 71302313 G C LRRC49 Missense_Mutation p.Q530H 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-E2-A574-01 16 13329149 13329149 G - SHISA9 Frame_Shift_Del p.G387Afs*36 0.17 TCGA-E2-A574-01 16 3602230 3602234 GCATC CATG NLRC3 Missense_Mutation 0.21 TCGA-E2-A574-01 16 56936397 56936397 G A SLC12A3 Missense_Mutation p.E954K 0.65 deleterious(0) possibly_damaging(0.852) TCGA-E2-A574-01 16 68225648 68225648 A T NFATC3 Missense_Mutation p.I1026F 0.20 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-E2-A574-01 16 84690686 84690686 C T KLHL36 Silent p.G91G 0.30 TCGA-E2-A574-01 16 88872978 88872978 G T CDT1 Missense_Mutation p.V340L 0.25 deleterious(0) possibly_damaging(0.895) TCGA-E2-A574-01 16 89925586 89925586 C T SPIRE2 Missense_Mutation p.P429L 0.67 deleterious(0.03) possibly_damaging(0.462) TCGA-E2-A574-01 17 16699372 16699372 G C CCDC144A 3'UTR 0.03 TCGA-E2-A574-01 17 21320356 21320356 C T KCNJ12 3'UTR 0.10 TCGA-E2-A574-01 17 33310218 33310218 G A LIG3 Missense_Mutation p.R65K 0.16 tolerated_low_confidence(0.62) benign(0.002) TCGA-E2-A574-01 17 38854480 38854480 G - KRT24 3'UTR 0.25 TCGA-E2-A574-01 17 39911340 39911340 G A JUP 3'UTR 0.54 TCGA-E2-A574-01 17 4452659 4452659 C T MYBBP1A Silent p.E466E 0.11 TCGA-E2-A574-01 17 46684709 46684709 G A HOXB7 3'UTR 0.50 TCGA-E2-A574-01 17 62558993 62558993 G C SMURF2 Missense_Mutation p.R370G 0.15 deleterious(0) possibly_damaging(0.749) TCGA-E2-A574-01 17 63525470 63525470 A C AXIN2 3'UTR 0.31 TCGA-E2-A574-01 17 7577152 7577158 ACCACTA - TP53 Splice_Site p.X261_splice 0.41 TCGA-E2-A574-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.59 deleterious(0) probably_damaging(1) TCGA-E2-A574-01 17 76565585 76565585 C G DNAH17 Missense_Mutation p.E357Q 0.33 benign(0.144) TCGA-E2-A574-01 17 78389493 78389493 G A ENDOV Missense_Mutation p.E34K 0.27 tolerated(0.26) benign(0.36) TCGA-E2-A574-01 17 78933918 78933918 C - RPTOR Frame_Shift_Del p.C1174Vfs*32 0.39 TCGA-E2-A574-01 19 12090687 12090687 G C ZNF763 3'UTR 0.17 TCGA-E2-A574-01 19 12962763 12962763 G C MAST1 Missense_Mutation p.E264Q 0.17 deleterious(0.04) benign(0.079) TCGA-E2-A574-01 19 14029770 14029770 G A CC2D1A Missense_Mutation p.R355Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-E2-A574-01 19 14030750 14030750 G A CC2D1A Missense_Mutation p.E448K 0.17 tolerated(0.13) benign(0.184) TCGA-E2-A574-01 19 14263405 14263405 C G LPHN1 Missense_Mutation p.W1153C 0.14 deleterious(0) probably_damaging(0.997) TCGA-E2-A574-01 19 15296369 15296369 G C NOTCH3 Silent p.L691L 0.13 TCGA-E2-A574-01 19 35749961 35749961 G A LSR Missense_Mutation p.V238I 0.75 deleterious(0) possibly_damaging(0.493) TCGA-E2-A574-01 19 36727858 36727858 A T ZNF146 Silent p.I172I 0.19 TCGA-E2-A574-01 19 37880273 37880273 C T ZNF527 Missense_Mutation p.P441L 0.27 deleterious(0) probably_damaging(1) TCGA-E2-A574-01 19 39098647 39098647 G C MAP4K1 Silent p.L364L 0.14 TCGA-E2-A574-01 19 39395737 39395737 G A NFKBIB Missense_Mutation p.D88N 0.10 tolerated(0.38) benign(0.048) TCGA-E2-A574-01 19 43414865 43414865 C G PSG6 Missense_Mutation p.R191S 0.22 tolerated(0.05) benign(0.012) TCGA-E2-A574-01 19 7621587 7621587 C T PNPLA6 Missense_Mutation p.S1096L 0.12 deleterious(0) possibly_damaging(0.754) TCGA-E2-A574-01 19 7998980 7998980 G A TIMM44 Silent p.L179L 0.21 TCGA-E2-A574-01 1 13474983 13474983 G A PRAMEF18 Silent p.F382F 0.24 TCGA-E2-A574-01 1 157771340 157771340 A C FCRL1 Missense_Mutation p.L305R 0.24 deleterious(0) probably_damaging(0.957) TCGA-E2-A574-01 1 184761770 184761770 C T FAM129A 3'UTR 0.24 TCGA-E2-A574-01 1 200971356 200971356 G A KIF21B Silent p.I445I 0.05 TCGA-E2-A574-01 1 206567003 206567003 C T SRGAP2 Silent p.Y182Y 0.09 TCGA-E2-A574-01 1 221054585 221054585 A C HLX Silent p.S214S 0.16 TCGA-E2-A574-01 1 23241418 23241418 C A EPHB2 3'Flank 0.16 TCGA-E2-A574-01 1 2537059 2537059 C G MMEL1 Missense_Mutation p.D252H 0.06 deleterious(0) probably_damaging(0.997) TCGA-E2-A574-01 1 55566622 55566622 C T USP24 Missense_Mutation p.D1721N 0.52 deleterious(0.01) possibly_damaging(0.612) TCGA-E2-A574-01 20 17639577 17639577 G C RRBP1 Intron 0.02 TCGA-E2-A574-01 20 20071503 20071503 C G C20orf26 Missense_Mutation p.D194E 0.09 deleterious(0) probably_damaging(0.995) TCGA-E2-A574-01 20 48604479 48604479 C G SNAI1 Silent p.L227L 0.15 TCGA-E2-A574-01 20 58521230 58521230 G C FAM217B 3'UTR 0.08 TCGA-E2-A574-01 21 40597087 40597087 C G BRWD1 Missense_Mutation p.W1082S 0.19 deleterious(0) probably_damaging(0.994) TCGA-E2-A574-01 21 46058270 46058270 T A KRTAP10-10 3'UTR 0.26 TCGA-E2-A574-01 21 46311893 46311893 C T ITGB2 Missense_Mutation p.V415I 0.27 tolerated(0.2) benign(0.368) TCGA-E2-A574-01 22 20907442 20907442 A G MED15 Silent p.K73K 0.14 TCGA-E2-A574-01 22 32081604 32081604 C T PRR14L Missense_Mutation p.R2122Q 0.09 tolerated(0.29) benign(0.021) TCGA-E2-A574-01 22 32289734 32289734 G T DEPDC5 Missense_Mutation p.E1391D 0.88 tolerated(0.53) benign(0.02) TCGA-E2-A574-01 22 38046694 38046694 T G SH3BP1 Silent p.A520A 0.81 TCGA-E2-A574-01 22 50500033 50500033 G A MLC1 Silent p.V371V 0.76 TCGA-E2-A574-01 22 50591516 50591516 C A MOV10L1 Missense_Mutation p.L979M 0.28 deleterious(0.02) probably_damaging(0.919) TCGA-E2-A574-01 2 128890805 128890805 C T UGGT1 Missense_Mutation p.R490W 0.09 deleterious(0) probably_damaging(1) TCGA-E2-A574-01 2 148657459 148657459 C G ACVR2A Missense_Mutation p.P174A 0.07 deleterious(0.01) possibly_damaging(0.687) TCGA-E2-A574-01 2 15761226 15761226 G C DDX1 Missense_Mutation p.G478A 0.21 tolerated(0.09) benign(0.033) TCGA-E2-A574-01 2 179623810 179623810 C T TTN Missense_Mutation p.E3402K 0.15 TCGA-E2-A574-01 2 206165312 206165312 G C PARD3B Missense_Mutation p.E686D 0.12 deleterious(0) probably_damaging(0.998) TCGA-E2-A574-01 2 219507867 219507867 G A ZNF142 Silent p.I1124I 0.16 TCGA-E2-A574-01 2 242275429 242275429 T C SEPT2 Missense_Mutation p.V86A 0.17 tolerated(0.23) probably_damaging(0.999) TCGA-E2-A574-01 2 32774504 32774504 C T BIRC6 Missense_Mutation p.S4367F 0.17 probably_damaging(0.996) TCGA-E2-A574-01 2 55473573 55473573 C T MTIF2 Missense_Mutation p.E336K 0.06 deleterious(0) probably_damaging(0.965) TCGA-E2-A574-01 2 66798489 66798489 G A MEIS1 3'UTR 0.18 TCGA-E2-A574-01 2 69692506 69692506 G A AAK1 3'Flank 0.50 TCGA-E2-A574-01 2 71371571 71371571 A C MPHOSPH10 Missense_Mutation p.E487A 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-E2-A574-01 2 74327763 74327763 C G TET3 Missense_Mutation p.S1148C 0.08 deleterious(0.02) possibly_damaging(0.759) TCGA-E2-A574-01 2 95753237 95753237 G A MRPS5 Silent p.S386S 0.18 TCGA-E2-A574-01 2 96071355 96071355 C T FAHD2A Nonsense_Mutation p.Q17* 0.12 TCGA-E2-A574-01 3 119466660 119466660 G A MAATS1 Missense_Mutation p.R685Q 0.26 deleterious(0.05) benign(0.049) TCGA-E2-A574-01 3 122880757 122880757 C G PDIA5 Missense_Mutation p.L504V 0.17 tolerated(0.05) possibly_damaging(0.67) TCGA-E2-A574-01 3 131268919 131268919 G A CPNE4 Nonsense_Mutation p.Q392* 0.22 TCGA-E2-A574-01 3 147128862 147128862 C G ZIC1 Missense_Mutation p.I321M 0.40 deleterious(0) probably_damaging(0.995) TCGA-E2-A574-01 3 17053215 17053215 G A PLCL2 Missense_Mutation p.D667N 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A574-01 3 196673935 196673935 C G PIGZ 3'UTR 0.29 TCGA-E2-A574-01 3 39555376 39555376 G T MOBP 3'UTR 0.41 TCGA-E2-A574-01 3 49449842 49449842 G C TCTA 5'UTR 0.19 TCGA-E2-A574-01 3 52282678 52282678 G A PPM1M Missense_Mutation p.D102N 0.39 deleterious(0) probably_damaging(0.995) TCGA-E2-A574-01 3 77147378 77147378 T G ROBO2 Missense_Mutation p.F108C 0.48 deleterious(0) unknown(0) TCGA-E2-A574-01 3 89529128 89529128 G T EPHA3 3'UTR 0.21 TCGA-E2-A574-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.84 deleterious(0) probably_damaging(1) TCGA-E2-A574-01 4 169227774 169227774 G C DDX60 Missense_Mutation p.T121R 0.62 deleterious(0) probably_damaging(0.984) TCGA-E2-A574-01 4 5823135 5823135 C T CRMP1 3'UTR 0.29 TCGA-E2-A574-01 4 68797734 68797734 G A TMPRSS11A Silent p.I102I 0.11 TCGA-E2-A574-01 5 133451484 133451484 C T TCF7 Intron 0.13 TCGA-E2-A574-01 5 140736344 140736344 G C PCDHGA4 Missense_Mutation p.R526T 0.28 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-E2-A574-01 5 146619205 146619205 C T STK32A Missense_Mutation p.A3V 0.67 tolerated(0.24) benign(0.164) TCGA-E2-A574-01 5 150946114 150946114 A G FAT2 Silent p.Y793Y 0.85 TCGA-E2-A574-01 5 154169917 154169917 G A LARP1 Missense_Mutation p.A80T 0.34 tolerated(0.08) possibly_damaging(0.538) TCGA-E2-A574-01 5 154316741 154316741 T G GEMIN5 Silent p.I57I 0.35 TCGA-E2-A574-01 5 159661862 159661862 G A FABP6 Silent p.V142V 0.32 TCGA-E2-A574-01 5 22142589 22142589 A T CDH12 Intron 0.09 TCGA-E2-A574-01 5 39377343 39377343 T C DAB2 Missense_Mutation p.T516A 0.26 tolerated(0.93) benign(0.001) TCGA-E2-A574-01 5 64925401 64925401 T A CTC-534A2.2 5'UTR 0.72 TCGA-E2-A574-01 5 96239219 96239219 C T ERAP2 Missense_Mutation p.P656L 0.06 tolerated(0.59) benign(0.038) TCGA-E2-A574-01 6 160484554 160484554 C T IGF2R Missense_Mutation p.R1260W 0.13 deleterious(0) probably_damaging(0.999) TCGA-E2-A574-01 6 29274518 29274518 G A OR14J1 Missense_Mutation p.E18K 0.14 tolerated(0.98) benign(0.028) TCGA-E2-A574-01 6 30859162 30859162 C T DDR1 Missense_Mutation p.L191F 0.15 deleterious(0) possibly_damaging(0.896) TCGA-E2-A574-01 6 31133443 31133443 C G POU5F1 Missense_Mutation p.E188Q 0.12 deleterious(0) probably_damaging(0.955) TCGA-E2-A574-01 6 36930968 36930968 G A PI16 Missense_Mutation p.V284I 0.05 tolerated(0.09) benign(0.016) TCGA-E2-A574-01 6 43533394 43533394 C T XPO5 Intron 0.26 TCGA-E2-A574-01 6 45882272 45882272 C T CLIC5 Intron 0.29 TCGA-E2-A574-01 6 74104600 74104600 C T DDX43 5'UTR 0.18 TCGA-E2-A574-01 6 74228681 74228681 C G EEF1A1 Missense_Mutation p.D199H 0.05 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-E2-A574-01 7 148700311 148700311 G C PDIA4 3'UTR 0.81 TCGA-E2-A574-01 7 149477329 149477329 G A SSPO RNA 0.45 TCGA-E2-A574-01 7 151253505 151253505 C A PRKAG2 3'UTR 0.38 TCGA-E2-A574-01 7 19738156 19738156 G C TWISTNB Missense_Mutation p.A267G 0.08 tolerated(0.09) benign(0) TCGA-E2-A574-01 7 23145615 23145615 G A KLHL7 5'UTR 0.12 TCGA-E2-A574-01 7 98565273 98565273 G A TRRAP Silent p.Q2481Q 0.33 TCGA-E2-A574-01 7 99933775 99933775 G C PILRB 5'UTR 0.19 TCGA-E2-A574-01 8 100779156 100779156 G A VPS13B Missense_Mutation p.R2427K 0.09 deleterious(0.01) benign(0.364) TCGA-E2-A574-01 8 55540482 55540482 C T RP1 Missense_Mutation p.S1347F 0.11 deleterious(0.02) benign(0.034) TCGA-E2-A574-01 8 81430743 81430743 C T ZBTB10 Missense_Mutation p.P689L 0.04 tolerated(0.24) benign(0.019) TCGA-E2-A574-01 9 20944725 20944725 G T FOCAD Silent p.L1169L 0.18 TCGA-E2-A574-01 9 2650444 2650444 G A VLDLR Missense_Mutation p.D727N 0.28 tolerated(0.37) benign(0.001) TCGA-E2-A574-01 9 37862230 37862230 C G DCAF10 3'UTR 0.14 TCGA-E2-A574-01 9 711061 711061 G A KANK1 Missense_Mutation p.D99N 0.27 deleterious(0.01) possibly_damaging(0.58) TCGA-E2-A574-01 9 84534225 84534225 C T SPATA31D5P RNA 0.44 TCGA-E2-A574-01 X 107320311 107320311 C T VSIG1 Silent p.S324S 0.70 TCGA-E2-A574-01 X 30877660 30877660 G C TAB3 Missense_Mutation p.L16V 0.18 deleterious(0) probably_damaging(0.996) TCGA-E2-A574-01 X 55650935 55650935 G C FOXR2 Missense_Mutation p.R264T 0.44 deleterious(0.01) possibly_damaging(0.906) TCGA-E2-A576-01 10 122334656 122334656 C T PPAPDC1A Silent p.G153G 0.30 TCGA-E2-A576-01 10 21803590 21803590 C A SKIDA1 3'UTR 0.45 TCGA-E2-A576-01 10 50820083 50820083 G A SLC18A3 Missense_Mutation p.A433T 0.11 deleterious(0) probably_damaging(0.991) TCGA-E2-A576-01 11 124622435 124622435 G A ESAM 3'Flank 0.13 TCGA-E2-A576-01 11 4676302 4676302 C G OR51E1 3'UTR 0.44 TCGA-E2-A576-01 11 55927789 55927789 C - OR8K5 Frame_Shift_Del p.G2Afs*5 0.37 TCGA-E2-A576-01 11 65412596 65412596 C A SIPA1 Silent p.T385T 0.21 TCGA-E2-A576-01 12 130648625 130648625 C T FZD10 Missense_Mutation p.L380F 0.33 deleterious(0) probably_damaging(0.999) TCGA-E2-A576-01 12 43944882 43944882 C T ADAMTS20 Missense_Mutation p.A95T 0.06 deleterious(0.03) possibly_damaging(0.599) TCGA-E2-A576-01 12 48379593 48379593 C T COL2A1 Missense_Mutation p.R533Q 0.39 benign(0.288) TCGA-E2-A576-01 12 53240013 53240013 A C KRT78 Missense_Mutation p.Y242D 0.43 tolerated(0.16) possibly_damaging(0.776) TCGA-E2-A576-01 12 7922594 7922594 C G NANOGNB Missense_Mutation p.P40A 0.39 tolerated(0.23) benign(0.003) TCGA-E2-A576-01 14 81682849 81682849 A G GTF2A1 Missense_Mutation p.Y14H 0.10 deleterious(0) probably_damaging(0.999) TCGA-E2-A576-01 15 56243753 56243753 T A snoU13 3'Flank 0.18 TCGA-E2-A576-01 16 68863582 68863582 G - CDH1 Frame_Shift_Del p.G775Afs*8 0.45 TCGA-E2-A576-01 17 1657663 1657663 C G SERPINF2 Missense_Mutation p.N437K 0.78 deleterious(0) possibly_damaging(0.834) TCGA-E2-A576-01 17 58235743 58235743 C T CA4 Missense_Mutation p.P227L 0.12 deleterious(0) probably_damaging(1) TCGA-E2-A576-01 17 71205473 71205473 A G FAM104A 3'UTR 0.36 TCGA-E2-A576-01 17 73780896 73780896 C A UNK 5'UTR 0.11 TCGA-E2-A576-01 17 79414120 79414120 C T RP11-1055B8.7 Silent p.D1074D 0.29 TCGA-E2-A576-01 18 11852952 11852952 A T CHMP1B 3'UTR 0.41 TCGA-E2-A576-01 18 13073134 13073134 C A CEP192 Missense_Mutation p.L1856I 0.33 deleterious(0.02) possibly_damaging(0.713) TCGA-E2-A576-01 19 10224689 10224689 C T P2RY11 Missense_Mutation p.P134S 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A576-01 19 10225712 10225712 T G P2RY11 3'UTR 0.06 TCGA-E2-A576-01 19 16339675 16339675 C T AP1M1 Missense_Mutation p.T340M 0.07 deleterious(0) possibly_damaging(0.903) TCGA-E2-A576-01 19 40873699 40873699 C A PLD3 Silent p.A114A 0.30 TCGA-E2-A576-01 19 51207702 51207702 G A SHANK1 Missense_Mutation p.P383S 0.36 benign(0.211) TCGA-E2-A576-01 19 9676833 9676833 T A ZNF121 Missense_Mutation p.K319I 0.39 deleterious(0) probably_damaging(0.997) TCGA-E2-A576-01 1 12017059 12017059 C T PLOD1 Silent p.N243N 0.13 TCGA-E2-A576-01 1 205116061 205116061 C G DSTYK 3'UTR 0.25 TCGA-E2-A576-01 1 205238191 205238191 C T TMCC2 Silent p.A287A 0.46 TCGA-E2-A576-01 1 9662394 9662394 G A TMEM201 Intron 0.50 TCGA-E2-A576-01 20 42680149 42680149 C A TOX2 Missense_Mutation p.S205R 0.15 deleterious(0) probably_damaging(0.992) TCGA-E2-A576-01 21 36206745 36206745 G A RUNX1 Missense_Mutation p.S256F 0.41 deleterious(0.01) possibly_damaging(0.694) TCGA-E2-A576-01 21 43691285 43691285 T A ABCG1 Missense_Mutation p.L131Q 0.43 deleterious(0) probably_damaging(1) TCGA-E2-A576-01 2 131673199 131673199 C T ARHGEF4 5'Flank 0.43 TCGA-E2-A576-01 2 161141344 161141344 C G RBMS1 Missense_Mutation p.R281P 0.48 deleterious(0.03) possibly_damaging(0.683) TCGA-E2-A576-01 2 179403892 179403892 C A TTN Missense_Mutation p.D32924Y 0.20 TCGA-E2-A576-01 2 179412628 179412628 C T TTN Missense_Mutation p.R31242H 0.28 TCGA-E2-A576-01 2 207310061 207310061 A T ADAM23 Missense_Mutation p.N82I 0.19 tolerated_low_confidence(0.19) benign(0) TCGA-E2-A576-01 2 220172238 220172238 G A PTPRN Missense_Mutation p.R70W 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-E2-A576-01 2 55602019 55602019 C T CCDC88A Missense_Mutation p.E92K 0.38 deleterious(0) benign(0.279) TCGA-E2-A576-01 2 62103249 62103249 T A CCT4 Missense_Mutation p.I300L 0.26 tolerated(0.07) benign(0.405) TCGA-E2-A576-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.62 tolerated(1) benign(0.008) TCGA-E2-A576-01 3 64084011 64084011 C G PRICKLE2 3'UTR 0.15 TCGA-E2-A576-01 4 162841716 162841716 C T FSTL5 Silent p.G83G 0.21 TCGA-E2-A576-01 4 166006831 166006831 C T TMEM192 Missense_Mutation p.R195Q 0.46 tolerated(0.39) benign(0.014) TCGA-E2-A576-01 4 52861213 52861213 C T LRRC66 Missense_Mutation p.G659S 0.38 tolerated(1) benign(0.002) TCGA-E2-A576-01 4 6322415 6322415 C T PPP2R2C 3'UTR 0.46 TCGA-E2-A576-01 4 7719905 7719905 G A SORCS2 Missense_Mutation p.E807K 0.40 deleterious(0.01) possibly_damaging(0.747) TCGA-E2-A576-01 5 168175305 168175306 AC - SLIT3 Splice_Site p.X757_splice 0.30 TCGA-E2-A576-01 5 179041612 179041612 G A HNRNPH1 3'UTR 0.11 TCGA-E2-A576-01 7 149479339 149479339 G A SSPO RNA 0.37 TCGA-E2-A576-01 7 20824281 20824281 G A SP8 Silent p.Y385Y 0.14 TCGA-E2-A576-01 7 31862840 31862840 C T PDE1C Missense_Mutation p.D537N 0.38 tolerated(0.11) benign(0.14) TCGA-E2-A576-01 7 44736571 44736571 G T OGDH Missense_Mutation p.W653C 0.36 deleterious(0) probably_damaging(1) TCGA-E2-A576-01 7 74146987 74146987 C T GTF2I Missense_Mutation p.R430C 0.06 deleterious(0) probably_damaging(1) TCGA-E2-A576-01 8 104933933 104933933 G T RIMS2 Missense_Mutation p.R706L 0.13 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-E2-A576-01 8 106816567 106816567 C T ZFPM2 3'UTR 0.15 TCGA-E2-A576-01 8 42407792 42407792 C T SMIM19 3'UTR 0.31 TCGA-E2-A576-01 8 70978501 70978501 C A PRDM14 Missense_Mutation p.E384D 0.07 tolerated(0.41) benign(0.005) TCGA-E2-A576-01 8 72111409 72111409 G A EYA1 3'UTR 0.12 TCGA-E2-A576-01 8 79590840 79590840 C T ZC2HC1A Missense_Mutation p.R46W 0.26 deleterious(0) probably_damaging(1) TCGA-E2-A576-01 9 104130513 104130513 G A BAAT Silent p.F186F 0.16 TCGA-E2-A576-01 9 137328387 137328388 - A RXRA Frame_Shift_Ins p.F439Lfs*10 0.27 TCGA-E2-A576-01 9 138676386 138676386 C T KCNT1 Silent p.F983F 0.39 TCGA-E2-A576-01 9 139874640 139874640 A T PTGDS Missense_Mutation p.T152S 0.48 tolerated(0.16) benign(0.02) TCGA-E2-A576-01 9 6506064 6506064 T - UHRF2 Frame_Shift_Del p.F766Sfs*16 0.27 TCGA-E2-A576-01 X 114524334 114524334 G A LUZP4 Silent p.S3S 0.48 TCGA-E2-A576-01 X 115304449 115304449 T C AGTR2 Silent p.L306L 0.05 TCGA-E2-A576-01 X 150157244 150157244 T C HMGB3 3'UTR 0.09 TCGA-E2-A576-01 X 19988362 19988362 T A CXorf23 Missense_Mutation p.R7S 0.56 deleterious(0) probably_damaging(0.972) TCGA-E2-A576-01 X 46740980 46740980 G A RP2 3'UTR 0.38 TCGA-E2-A576-01 X 48888962 48888962 G A TFE3 Missense_Mutation p.R412W 0.42 deleterious(0) possibly_damaging(0.689) TCGA-E2-A576-01 X 49062094 49062094 G A CACNA1F Silent p.A1895A 0.07 TCGA-E2-A9RU-01 10 134258735 134258762 TGGGTATAAAGCAGCTGAAATGTGGAGT - C10orf91 Missense_Mutation 0.27 TCGA-E2-A9RU-01 10 61552816 61552816 C T CCDC6 Silent p.P428P 0.36 TCGA-E2-A9RU-01 10 75552077 75552077 G A ZSWIM8 Missense_Mutation p.G594R 0.09 tolerated_low_confidence(0.37) probably_damaging(0.991) TCGA-E2-A9RU-01 10 81373718 81373718 G A SFTPA1 Missense_Mutation p.R214H 0.21 tolerated(0.82) benign(0.003) TCGA-E2-A9RU-01 11 101786047 101786047 C T KIAA1377 Missense_Mutation p.A11V 0.21 tolerated(0.11) benign(0.255) TCGA-E2-A9RU-01 11 198069 198069 G A ODF3 Intron 0.62 TCGA-E2-A9RU-01 11 34226145 34226145 G A ABTB2 Nonsense_Mutation p.R326* 0.69 TCGA-E2-A9RU-01 11 63325903 63325903 G A HRASLS2 Silent p.F116F 0.15 TCGA-E2-A9RU-01 12 129299332 129299332 C A SLC15A4 Missense_Mutation p.R277L 0.11 tolerated(0.18) benign(0.012) TCGA-E2-A9RU-01 12 48437409 48437412 AAAG - SENP1 3'UTR 0.11 TCGA-E2-A9RU-01 12 50232127 50232127 C A BCDIN3D 3'UTR 0.21 TCGA-E2-A9RU-01 14 104165817 104165817 G A XRCC3 Missense_Mutation p.R220C 0.33 deleterious(0.02) probably_damaging(1) TCGA-E2-A9RU-01 14 75745696 75745696 C T FOS Missense_Mutation p.S4L 0.85 tolerated(0.05) benign(0.036) TCGA-E2-A9RU-01 15 29346528 29346528 G A APBA2 Silent p.P147P 0.79 TCGA-E2-A9RU-01 15 41795166 41795166 C T ITPKA Silent p.I396I 0.44 TCGA-E2-A9RU-01 15 49292057 49292057 C A SECISBP2L Silent p.V792V 0.23 TCGA-E2-A9RU-01 15 59494554 59494554 G A MYO1E Missense_Mutation p.R557C 0.17 deleterious(0) probably_damaging(1) TCGA-E2-A9RU-01 15 66215201 66215201 G A MEGF11 Silent p.C594C 0.21 TCGA-E2-A9RU-01 15 67813864 67813864 C G C15orf61 Missense_Mutation p.S93C 0.29 deleterious(0) probably_damaging(0.964) TCGA-E2-A9RU-01 16 31128983 31128983 G A KAT8 5'Flank 0.35 TCGA-E2-A9RU-01 16 74990386 74990386 T G WDR59 Missense_Mutation p.Y76S 0.38 tolerated(0.09) benign(0.035) TCGA-E2-A9RU-01 16 81181020 81181020 G A PKD1L2 RNA 0.21 TCGA-E2-A9RU-01 16 84214972 84214972 C T TAF1C Missense_Mutation p.V402M 0.93 deleterious(0.01) probably_damaging(0.927) TCGA-E2-A9RU-01 17 11984689 11984689 C - MAP2K4 Frame_Shift_Del p.H79Tfs*9 0.45 TCGA-E2-A9RU-01 17 21319295 21319295 G A KCNJ12 Missense_Mutation p.R214H 0.27 deleterious(0) probably_damaging(0.997) TCGA-E2-A9RU-01 17 46154339 46154342 CTTT - CBX1 Frame_Shift_Del p.K9Wfs*5 0.86 TCGA-E2-A9RU-01 17 73897861 73897861 C T MRPL38 Missense_Mutation p.V175M 0.12 deleterious(0) probably_damaging(1) TCGA-E2-A9RU-01 17 7579349 7579349 A C TP53 Missense_Mutation p.F113C 0.35 deleterious(0) probably_damaging(1) TCGA-E2-A9RU-01 18 20832971 20832971 G A CABLES1 Missense_Mutation p.M498I 0.09 tolerated(0.1) possibly_damaging(0.559) TCGA-E2-A9RU-01 18 259187 259187 C G THOC1 Missense_Mutation p.E171D 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-E2-A9RU-01 18 31324343 31324343 G A ASXL3 Missense_Mutation p.V1511I 0.31 benign(0) TCGA-E2-A9RU-01 18 7567771 7567771 G A PTPRM 5'UTR 0.17 TCGA-E2-A9RU-01 18 77918012 77918012 C T PARD6G Missense_Mutation p.R258H 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-E2-A9RU-01 19 11598244 11598245 AC G ZNF653 Frame_Shift_Del p.V345Pfs*14 0.11 TCGA-E2-A9RU-01 19 4433380 4433380 G A CHAF1A Nonsense_Mutation p.W839* 0.14 TCGA-E2-A9RU-01 19 4941616 4941616 C T UHRF1 RNA 0.22 TCGA-E2-A9RU-01 19 50713885 50713885 G A MYH14 Missense_Mutation p.R88Q 0.42 tolerated(0.06) benign(0.068) TCGA-E2-A9RU-01 19 54972646 54972646 G A LENG8 3'UTR 0.35 TCGA-E2-A9RU-01 19 8152738 8152738 G T FBN3 Missense_Mutation p.T2197N 0.19 tolerated(0.15) possibly_damaging(0.616) TCGA-E2-A9RU-01 1 111146062 111146062 C G KCNA2 Missense_Mutation p.R448T 0.39 tolerated_low_confidence(0.23) benign(0.031) TCGA-E2-A9RU-01 1 120437384 120437384 C T ADAM30 Missense_Mutation p.V526I 0.15 tolerated(0.21) benign(0.381) TCGA-E2-A9RU-01 1 151611351 151611351 T C SNX27 Intron 0.06 TCGA-E2-A9RU-01 1 152082859 152082859 C G TCHH Missense_Mutation p.R945T 0.24 unknown(0) TCGA-E2-A9RU-01 1 157803153 157803153 A C CD5L Missense_Mutation p.S290A 0.33 tolerated(0.92) benign(0.057) TCGA-E2-A9RU-01 1 158736095 158736095 G A OR6N1 Silent p.I126I 0.22 TCGA-E2-A9RU-01 1 161993094 161993094 C T OLFML2B Missense_Mutation p.E43K 0.18 deleterious(0.04) benign(0.194) TCGA-E2-A9RU-01 1 170115258 170115258 C T METTL11B Missense_Mutation p.R4W 0.27 deleterious_low_confidence(0.03) benign(0.007) TCGA-E2-A9RU-01 1 197390429 197390429 G A CRB1 Missense_Mutation p.D491N 0.13 tolerated(1) benign(0) TCGA-E2-A9RU-01 1 201170935 201170935 C T IGFN1 Missense_Mutation p.S241F 0.24 benign(0.302) TCGA-E2-A9RU-01 1 204172114 204172114 C T GOLT1A Silent p.K9K 0.33 TCGA-E2-A9RU-01 1 207966977 207966977 C A CD46 3'UTR 0.12 TCGA-E2-A9RU-01 1 215409952 215409952 A G KCNK2 3'UTR 0.40 TCGA-E2-A9RU-01 1 226548693 226548693 G A PARP1 3'UTR 0.06 TCGA-E2-A9RU-01 1 228537642 228537642 A T OBSCN Missense_Mutation p.D7024V 0.11 probably_damaging(0.995) TCGA-E2-A9RU-01 1 228566361 228566361 A T OBSCN Silent p.L8879L 0.57 TCGA-E2-A9RU-01 1 26362702 26362702 C A EXTL1 3'UTR 0.27 TCGA-E2-A9RU-01 1 36755023 36755023 C T THRAP3 Missense_Mutation p.S468L 0.20 tolerated(0.67) probably_damaging(0.962) TCGA-E2-A9RU-01 1 46739369 46739369 G A RAD54L Silent p.S520S 0.12 TCGA-E2-A9RU-01 1 66091806 66091806 A T LEPR Intron 0.37 TCGA-E2-A9RU-01 20 36145868 36145868 A G BLCAP 3'UTR 0.23 TCGA-E2-A9RU-01 20 8689378 8689378 C T PLCB1 Missense_Mutation p.S410L 0.08 deleterious(0) possibly_damaging(0.741) TCGA-E2-A9RU-01 22 23401697 23401697 G A RTDR1 Silent p.A330A 0.56 TCGA-E2-A9RU-01 2 101627958 101627958 G A TBC1D8 Missense_Mutation p.P943S 0.48 tolerated(0.18) possibly_damaging(0.616) TCGA-E2-A9RU-01 2 101627998 101627998 G T TBC1D8 Silent p.L929L 0.43 TCGA-E2-A9RU-01 2 122260741 122260741 A C CLASP1 Splice_Site p.X238_splice 0.19 TCGA-E2-A9RU-01 2 128051678 128051678 G A ERCC3 5'UTR 0.62 TCGA-E2-A9RU-01 2 170502116 170502116 C T CCDC173 3'UTR 0.33 TCGA-E2-A9RU-01 2 187625890 187625890 T C FAM171B Missense_Mutation p.F355L 0.12 tolerated(0.57) benign(0.229) TCGA-E2-A9RU-01 2 21228850 21228850 C A APOB Missense_Mutation p.K3630N 0.63 possibly_damaging(0.77) TCGA-E2-A9RU-01 2 232573256 232573256 A G PTMA 5'UTR 0.33 TCGA-E2-A9RU-01 2 27435142 27435142 G A ATRAID Missense_Mutation p.R24H 0.15 tolerated_low_confidence(0.07) possibly_damaging(0.715) TCGA-E2-A9RU-01 2 27910854 27910854 A G SLC4A1AP Missense_Mutation p.S724G 0.35 tolerated(0.13) benign(0) TCGA-E2-A9RU-01 2 80085200 80085200 C T CTNNA2 Silent p.R120R 0.43 TCGA-E2-A9RU-01 3 112328863 112328863 T C CCDC80 Missense_Mutation p.Q796R 0.11 deleterious(0) probably_damaging(0.996) TCGA-E2-A9RU-01 3 122829832 122829832 G A PDIA5 Silent p.L174L 0.17 TCGA-E2-A9RU-01 3 178916929 178916929 G C PIK3CA Missense_Mutation p.G106R 0.28 deleterious(0.01) probably_damaging(1) TCGA-E2-A9RU-01 3 183602518 183602518 G A PARL Silent p.L39L 0.51 TCGA-E2-A9RU-01 3 38752341 38752341 G A SCN10A Silent p.S1379S 0.29 TCGA-E2-A9RU-01 3 39177887 39177887 G A TTC21A Missense_Mutation p.R1002K 0.26 deleterious(0.02) benign(0.41) TCGA-E2-A9RU-01 3 46414794 46414794 T A CCR5 Missense_Mutation p.V134E 0.16 deleterious(0) probably_damaging(0.997) TCGA-E2-A9RU-01 3 51430310 51430310 G A RBM15B Missense_Mutation p.E494K 0.30 tolerated(0.07) benign(0.181) TCGA-E2-A9RU-01 4 145581029 145581029 C T HHIP Intron 0.09 TCGA-E2-A9RU-01 4 149357179 149357179 G T NR3C2 Missense_Mutation p.H278Q 0.44 tolerated_low_confidence(0.19) possibly_damaging(0.589) TCGA-E2-A9RU-01 4 151504472 151504472 C T MAB21L2 Silent p.C97C 0.38 TCGA-E2-A9RU-01 4 158284827 158284827 G C GRIA2 3'UTR 0.17 TCGA-E2-A9RU-01 5 108523288 108523288 C T FER 3'UTR 0.39 TCGA-E2-A9RU-01 5 167622301 167622301 G A TENM2 Splice_Site p.X967_splice 0.22 TCGA-E2-A9RU-01 6 105609370 105609370 C G POPDC3 Missense_Mutation p.E139Q 0.07 tolerated(0.27) probably_damaging(0.99) TCGA-E2-A9RU-01 6 105609748 105609748 C T POPDC3 Missense_Mutation p.D13N 0.06 tolerated(0.32) benign(0.013) TCGA-E2-A9RU-01 6 108370587 108370587 G C OSTM1 Missense_Mutation p.F273L 0.07 tolerated(0.15) probably_damaging(0.94) TCGA-E2-A9RU-01 6 3154003 3154003 G C TUBB2A 3'UTR 0.30 TCGA-E2-A9RU-01 6 33264193 33264193 T C RGL2 Silent p.T156T 0.57 TCGA-E2-A9RU-01 7 14187943 14187943 C T DGKB 3'UTR 0.22 TCGA-E2-A9RU-01 7 47341825 47341825 G C TNS3 Missense_Mutation p.T1168S 0.43 deleterious(0) probably_damaging(0.986) TCGA-E2-A9RU-01 7 47976509 47976509 T C PKD1L1 Missense_Mutation p.E111G 0.09 tolerated_low_confidence(0.33) benign(0.003) TCGA-E2-A9RU-01 7 66236988 66236988 C T RABGEF1 Silent p.F34F 0.40 TCGA-E2-A9RU-01 8 101083683 101083683 C T RGS22 Missense_Mutation p.V170M 0.10 tolerated(0.25) benign(0.001) TCGA-E2-A9RU-01 8 143993990 143993990 C T CYP11B2 Missense_Mutation p.G452R 0.24 deleterious(0) probably_damaging(1) TCGA-E2-A9RU-01 8 38940211 38940211 G C ADAM9 Missense_Mutation p.D645H 0.06 deleterious(0) probably_damaging(0.994) TCGA-E2-A9RU-01 8 40012115 40012115 C G C8orf4 3'UTR 0.19 TCGA-E2-A9RU-01 8 40012356 40012356 C T C8orf4 3'UTR 0.25 TCGA-E2-A9RU-01 9 107267140 107267140 G T OR13F1 Missense_Mutation p.M199I 0.21 tolerated(0.13) benign(0.034) TCGA-E2-A9RU-01 9 112900754 112900754 C T PALM2-AKAP2 Missense_Mutation p.T977M 0.28 tolerated(0.06) possibly_damaging(0.605) TCGA-E2-A9RU-01 9 139250229 139250229 T A GPSM1 Missense_Mutation p.C515S 0.11 deleterious(0) probably_damaging(1) TCGA-E2-A9RU-01 X 102564451 102564451 T C BEX2 3'UTR 0.40 TCGA-E2-A9RU-01 X 139586772 139586772 C T SOX3 Missense_Mutation p.G152R 0.19 deleterious(0) probably_damaging(1) TCGA-E2-A9RU-01 X 152135780 152135780 G T ZNF185 Missense_Mutation p.E654D 0.33 tolerated(0.09) possibly_damaging(0.525) TCGA-E2-A9RU-01 X 153129854 153129854 G A L1CAM Missense_Mutation p.P1082L 0.27 deleterious(0) possibly_damaging(0.847) TCGA-E2-A9RU-01 X 23414848 23414848 A C PTCHD1 3'UTR 0.43 TCGA-E2-A9RU-01 X 57621384 57621384 C A ZXDB 3'UTR 0.28 TCGA-E2-A9RU-01 X 65242548 65242548 C T VSIG4 Intron 0.14 TCGA-E2-A9RU-01 X 70586236 70586236 G A TAF1 Silent p.T24T 0.51 TCGA-E9-A1N3-01 10 43018703 43018703 C A ZNF37BP RNA 0.41 TCGA-E9-A1N3-01 10 8115955 8115956 - C GATA3 Frame_Shift_Ins p.S437Lfs*71 0.24 TCGA-E9-A1N3-01 11 134118258 134118258 C A THYN1 3'UTR 0.22 TCGA-E9-A1N3-01 11 56043116 56043116 T C OR5T1 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-E9-A1N3-01 11 63072159 63072159 G A SLC22A10 Missense_Mutation p.A466T 0.14 tolerated(0.05) benign(0.178) TCGA-E9-A1N3-01 12 78569113 78569113 C A NAV3 Missense_Mutation p.S1670Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-E9-A1N3-01 12 99074131 99074131 C G APAF1 Missense_Mutation p.S666C 0.30 deleterious(0) probably_damaging(0.999) TCGA-E9-A1N3-01 13 52676103 52676103 C T NEK5 Silent p.A286A 0.07 TCGA-E9-A1N3-01 13 77459346 77459346 A G KCTD12 Missense_Mutation p.I313T 0.15 deleterious(0.01) benign(0.147) TCGA-E9-A1N3-01 16 50063633 50063633 C T CNEP1R1 Intron 0.39 TCGA-E9-A1N3-01 17 65688873 65688873 G A PITPNC1 Missense_Mutation p.V290I 0.16 tolerated(0.05) benign(0.033) TCGA-E9-A1N3-01 19 19823822 19823822 C A ZNF14 Missense_Mutation p.V90F 0.11 tolerated(0.45) benign(0.107) TCGA-E9-A1N3-01 19 39964082 39964082 C T SUPT5H Nonsense_Mutation p.Q805* 0.65 TCGA-E9-A1N3-01 19 55176608 55176608 C T LILRB4 Missense_Mutation p.P245L 0.53 deleterious(0) benign(0.002) TCGA-E9-A1N3-01 1 167793766 167793766 G T ADCY10 Silent p.R1334R 0.41 TCGA-E9-A1N3-01 20 62373244 62373244 G A SLC2A4RG Silent p.K138K 0.58 TCGA-E9-A1N3-01 21 43510515 43510515 A T UMODL1 Missense_Mutation p.T300S 0.19 tolerated(0.87) benign(0.06) TCGA-E9-A1N3-01 22 36597959 36597959 G A APOL4 Intron 0.16 TCGA-E9-A1N3-01 3 130116598 130116598 C T COL6A5 Missense_Mutation p.A1247V 0.44 deleterious(0) probably_damaging(0.999) TCGA-E9-A1N3-01 3 184911173 184911173 T G EHHADH Missense_Mutation p.K338T 0.25 tolerated(0.14) benign(0.211) TCGA-E9-A1N3-01 3 98216606 98216606 T G OR5K2 Missense_Mutation p.F28V 0.37 deleterious(0) possibly_damaging(0.676) TCGA-E9-A1N3-01 4 100510904 100510904 T C MTTP Silent p.N166N 0.36 TCGA-E9-A1N3-01 4 115586898 115586898 A C UGT8 Missense_Mutation p.Q343P 0.08 deleterious(0.01) possibly_damaging(0.887) TCGA-E9-A1N3-01 4 147858746 147858746 G C TTC29 Missense_Mutation p.A59G 0.21 tolerated(0.1) benign(0.009) TCGA-E9-A1N3-01 5 169445994 169445994 T A DOCK2 Missense_Mutation p.M1088K 0.20 deleterious(0) probably_damaging(0.976) TCGA-E9-A1N3-01 5 178139471 178139471 C A ZNF354A Missense_Mutation p.V470L 0.37 tolerated(0.11) possibly_damaging(0.9) TCGA-E9-A1N3-01 6 109993173 109993173 C A AK9 Missense_Mutation p.V94F 0.24 deleterious(0) probably_damaging(0.93) TCGA-E9-A1N3-01 7 101740745 101740745 G T CUX1 Nonsense_Mutation p.E135* 0.33 TCGA-E9-A1N3-01 7 65157820 65157820 G C INTS4L2 RNA 0.38 TCGA-E9-A1N3-01 7 99696737 99696737 C T MCM7 Missense_Mutation p.R164H 0.47 deleterious(0) probably_damaging(0.931) TCGA-E9-A1N3-01 X 129203418 129203418 C A ELF4 Missense_Mutation p.W348C 0.08 tolerated(0.12) possibly_damaging(0.863) TCGA-E9-A1N3-01 X 19022933 19022933 C A GPR64 Missense_Mutation p.G635V 0.10 deleterious(0) probably_damaging(1) TCGA-E9-A1N4-01 10 133058579 133058579 G A TCERG1L Missense_Mutation p.R267C 0.22 tolerated(1) benign(0) TCGA-E9-A1N4-01 10 15614253 15614253 A G ITGA8 Missense_Mutation p.L865P 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-E9-A1N4-01 10 50946095 50946095 C G OGDHL Silent p.V805V 0.05 TCGA-E9-A1N4-01 12 22005315 22005315 G A ABCC9 Missense_Mutation p.T877M 0.12 deleterious(0.02) benign(0.417) TCGA-E9-A1N4-01 12 5153951 5153951 T A KCNA5 Missense_Mutation p.F213Y 0.62 tolerated(0.23) possibly_damaging(0.578) TCGA-E9-A1N4-01 12 98926744 98926744 G A TMPO Missense_Mutation p.E237K 0.37 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-E9-A1N4-01 13 39453040 39453040 G A FREM2 Missense_Mutation p.D2978N 0.34 tolerated(0.16) benign(0.141) TCGA-E9-A1N4-01 13 52345423 52345423 G A DHRS12 Intron 0.44 TCGA-E9-A1N4-01 15 42111445 42111445 C T MAPKBP1 Missense_Mutation p.H771Y 0.29 tolerated(0.24) benign(0.371) TCGA-E9-A1N4-01 17 48151577 48151577 G C ITGA3 Missense_Mutation p.D439H 0.07 deleterious(0) probably_damaging(1) TCGA-E9-A1N4-01 17 56382901 56382901 C G BZRAP1 Missense_Mutation p.E1787D 0.31 deleterious(0) probably_damaging(0.998) TCGA-E9-A1N4-01 19 16593495 16593495 C T CALR3 Silent p.P260P 0.32 TCGA-E9-A1N4-01 19 42092973 42092973 G C CEACAM21 3'Flank 0.43 TCGA-E9-A1N4-01 1 158224299 158224299 C G CD1A 5'UTR 0.32 TCGA-E9-A1N4-01 1 204507346 204507346 G A MDM4 Missense_Mutation p.E141K 0.35 tolerated(0.41) benign(0.009) TCGA-E9-A1N4-01 21 37771831 37771831 A G CHAF1B Silent p.V197V 0.33 TCGA-E9-A1N4-01 22 20457282 20457282 C T RIMBP3 Silent p.P1340P 0.07 TCGA-E9-A1N4-01 22 37771134 37771134 G A ELFN2 Silent p.F147F 0.18 TCGA-E9-A1N4-01 2 46844414 46844414 G C CRIPT 5'UTR 0.13 TCGA-E9-A1N4-01 3 180680687 180680687 G C FXR1 Missense_Mutation p.R365T 0.34 tolerated(0.06) benign(0.058) TCGA-E9-A1N4-01 3 44701222 44701222 C T ZNF35 Missense_Mutation p.T456I 0.26 tolerated(0.09) possibly_damaging(0.479) TCGA-E9-A1N4-01 4 39553738 39553738 T A SMIM14 3'UTR 0.36 TCGA-E9-A1N4-01 5 56178577 56178577 G T MAP3K1 Nonsense_Mutation p.E1184* 0.30 TCGA-E9-A1N4-01 7 101091052 101091052 G T COL26A1 Silent p.G123G 0.39 TCGA-E9-A1N4-01 7 23825130 23825130 C T STK31 Nonsense_Mutation p.R728* 0.05 TCGA-E9-A1N4-01 7 75959501 75959501 G C YWHAG Missense_Mutation p.S46C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-E9-A1N4-01 7 95822421 95822421 G A SLC25A13 Silent p.I181I 0.28 TCGA-E9-A1N4-01 8 38033806 38033806 G A LSM1 Silent p.I11I 0.32 TCGA-E9-A1N4-01 8 71078828 71078828 G T NCOA2 Missense_Mutation p.P235T 0.27 deleterious(0) possibly_damaging(0.732) TCGA-E9-A1N4-01 X 154159944 154159944 C T F8 Nonsense_Mutation p.W707* 0.22 TCGA-E9-A1N4-01 X 27999081 27999081 C A DCAF8L1 Missense_Mutation p.G124V 0.35 tolerated_low_confidence(0.23) benign(0.04) TCGA-E9-A1N4-01 X 3235331 3235331 C T MXRA5 Missense_Mutation p.A2131T 0.26 deleterious(0.03) probably_damaging(0.951) TCGA-E9-A1N4-01 X 69510363 69510363 C T KIF4A Silent p.L19L 0.26 TCGA-E9-A1N4-01 X 70356252 70356252 G A MED12 Missense_Mutation p.R1716Q 0.38 benign(0.138) TCGA-E9-A1N5-01 11 319891 319891 T A IFITM3 Missense_Mutation p.M117L 0.37 tolerated(0.99) benign(0.001) TCGA-E9-A1N5-01 11 64577353 64577357 AGGTG - MEN1 Frame_Shift_Del p.T76Lfs*39 0.31 TCGA-E9-A1N5-01 11 65350230 65350230 C G EHBP1L1 Missense_Mutation p.S696C 0.56 deleterious(0.04) benign(0.016) TCGA-E9-A1N5-01 11 65351789 65351789 C G EHBP1L1 Silent p.V1057V 0.69 TCGA-E9-A1N5-01 11 65351858 65351858 C G EHBP1L1 Nonsense_Mutation p.Y1080* 0.56 TCGA-E9-A1N5-01 12 46287570 46287570 A G ARID2 Intron 0.33 TCGA-E9-A1N5-01 12 49220772 49220772 A G CACNB3 Missense_Mutation p.I336V 0.22 tolerated(0.13) probably_damaging(0.946) TCGA-E9-A1N5-01 12 88496844 88496844 C T CEP290 Intron 0.64 TCGA-E9-A1N5-01 12 99076949 99076949 T C APAF1 Missense_Mutation p.V692A 0.07 deleterious(0.04) possibly_damaging(0.729) TCGA-E9-A1N5-01 13 28895700 28895700 G A FLT1 Missense_Mutation p.A1025V 0.07 deleterious(0) probably_damaging(0.937) TCGA-E9-A1N5-01 15 100247006 100247006 A G MEF2A Missense_Mutation p.S313G 0.40 deleterious(0.02) probably_damaging(0.916) TCGA-E9-A1N5-01 15 64041947 64041947 G A HERC1 Missense_Mutation p.S649L 0.22 possibly_damaging(0.594) TCGA-E9-A1N5-01 16 67697208 67697208 C A ENKD1 Silent p.L299L 0.33 TCGA-E9-A1N5-01 17 29552143 29552144 - T NF1 Frame_Shift_Ins p.Y628Lfs*6 0.16 TCGA-E9-A1N5-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.42 deleterious(0) probably_damaging(1) TCGA-E9-A1N5-01 18 45566387 45566387 C T ZBTB7C Silent p.Q364Q 0.50 TCGA-E9-A1N5-01 18 45566388 45566388 T G ZBTB7C Missense_Mutation p.Q364P 0.50 deleterious(0) probably_damaging(0.979) TCGA-E9-A1N5-01 19 36395421 36395421 C G TYROBP 3'UTR 0.07 TCGA-E9-A1N5-01 1 198697545 198697545 C T PTPRC Silent p.Y599Y 0.33 TCGA-E9-A1N5-01 1 205210727 205210727 C T TMCC2 Missense_Mutation p.T101M 0.33 tolerated_low_confidence(0.21) benign(0.062) TCGA-E9-A1N5-01 1 238053221 238053221 C T ZP4 Missense_Mutation p.E116K 0.12 deleterious(0.01) benign(0.065) TCGA-E9-A1N5-01 20 31376692 31376692 G A DNMT3B Silent p.V229V 0.41 TCGA-E9-A1N5-01 20 35533890 35533890 C G SAMHD1 Missense_Mutation p.E429D 0.10 deleterious(0.05) benign(0.017) TCGA-E9-A1N5-01 2 152387588 152387599 CCTTGTTGTATT - NEB In_Frame_Del p.E7180_K7183del 0.57 TCGA-E9-A1N5-01 2 152490188 152490188 C T NEB Missense_Mutation p.A3132T 0.12 benign(0.105) TCGA-E9-A1N5-01 2 217724264 217724264 T A TNP1 3'UTR 0.40 TCGA-E9-A1N5-01 2 45780764 45780764 G A SRBD1 Silent p.F505F 0.07 TCGA-E9-A1N5-01 3 13896211 13896211 C T WNT7A Missense_Mutation p.D130N 0.22 tolerated(0.66) benign(0.004) TCGA-E9-A1N5-01 3 140695117 140695117 G C SLC25A36 Missense_Mutation p.R253T 0.06 deleterious(0) probably_damaging(1) TCGA-E9-A1N5-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.67 deleterious(0.04) probably_damaging(0.96) TCGA-E9-A1N5-01 4 155533321 155533321 T A FGG Silent p.A52A 0.14 TCGA-E9-A1N5-01 4 22749308 22749308 G A GBA3 Missense_Mutation p.A226T 0.41 tolerated(0.41) benign(0.025) TCGA-E9-A1N5-01 5 73985157 73985157 C T HEXB Missense_Mutation p.H102Y 0.12 tolerated(1) benign(0) TCGA-E9-A1N5-01 6 160505197 160505197 C G IGF2R Missense_Mutation p.L2017V 0.48 tolerated(0.08) benign(0.015) TCGA-E9-A1N5-01 6 34498048 34498048 C T PACSIN1 Nonsense_Mutation p.Q273* 0.11 TCGA-E9-A1N5-01 6 42585066 42585066 C T UBR2 Missense_Mutation p.A424V 0.33 tolerated(1) benign(0) TCGA-E9-A1N5-01 7 143747698 143747698 T C OR2A5 Silent p.I68I 0.32 TCGA-E9-A1N5-01 7 55914256 55914256 C T SEPT14 Silent p.V43V 0.20 TCGA-E9-A1N5-01 7 88963249 88963249 T C ZNF804B Missense_Mutation p.I318T 0.21 tolerated(0.29) benign(0.002) TCGA-E9-A1N5-01 8 25341520 25341520 A G CDCA2 Missense_Mutation p.M387V 0.39 tolerated(1) benign(0.007) TCGA-E9-A1N5-01 X 147733596 147733596 G T AFF2 Missense_Mutation p.D42Y 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A1N5-01 X 31165493 31165493 G A DMD Missense_Mutation p.R3566C 0.19 possibly_damaging(0.835) TCGA-E9-A1N8-01 10 27382277 27382277 C G ANKRD26 Splice_Site p.X177_splice 0.05 TCGA-E9-A1N8-01 10 69695914 69695917 TTTG - HERC4 Frame_Shift_Del p.Q891Ifs*78 0.61 TCGA-E9-A1N8-01 11 4674157 4674157 G A OR51E1 Missense_Mutation p.R134H 0.39 tolerated(0.15) benign(0.016) TCGA-E9-A1N8-01 11 61727502 61727502 A G BEST1 Missense_Mutation p.T303A 0.58 tolerated(0.26) possibly_damaging(0.574) TCGA-E9-A1N8-01 11 92507249 92507249 G T FAT3 Missense_Mutation p.G1413V 0.91 probably_damaging(0.959) TCGA-E9-A1N8-01 13 45768683 45768683 C G KCTD4 Missense_Mutation p.R7T 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-E9-A1N8-01 15 55497761 55497761 G A RAB27A Missense_Mutation p.H204Y 0.48 tolerated(0.05) benign(0.022) TCGA-E9-A1N8-01 16 69729284 69729284 T G NFAT5 Splice_Site 0.65 TCGA-E9-A1N8-01 17 74716578 74716578 A C JMJD6 Missense_Mutation p.I315S 0.52 tolerated(0.76) benign(0.005) TCGA-E9-A1N8-01 17 7577514 7577515 - T TP53 Frame_Shift_Ins p.T256Nfs*8 0.50 TCGA-E9-A1N8-01 19 19168318 19168318 C A ARMC6 Missense_Mutation p.Q463K 0.61 tolerated(0.36) benign(0.003) TCGA-E9-A1N8-01 19 38103247 38103247 G A ZNF540 Missense_Mutation p.E356K 0.46 tolerated(0.26) possibly_damaging(0.876) TCGA-E9-A1N8-01 19 51563338 51563338 A G KLK13 Silent p.V84V 0.33 TCGA-E9-A1N8-01 19 52394487 52394487 C G ZNF649 Missense_Mutation p.R301T 0.12 tolerated(0.72) benign(0.04) TCGA-E9-A1N8-01 19 57755311 57755311 T C ZNF805 Silent p.D17D 0.06 TCGA-E9-A1N8-01 1 224544621 224544621 A G CNIH4 5'UTR 0.08 TCGA-E9-A1N8-01 1 225977101 225977101 A G SRP9 3'UTR 0.59 TCGA-E9-A1N8-01 1 28904191 28904192 GA - TRNAU1AP 3'UTR 0.31 TCGA-E9-A1N8-01 1 32657943 32657943 T A TXLNA Missense_Mutation p.L332Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-E9-A1N8-01 1 36752151 36752151 A C THRAP3 Missense_Mutation p.Y107S 0.44 deleterious(0.01) unknown(0) TCGA-E9-A1N8-01 1 8421428 8421428 C T RERE Silent p.P713P 0.09 TCGA-E9-A1N8-01 2 109367878 109367878 T G RANBP2 Missense_Mutation p.S478A 0.38 deleterious(0) benign(0.02) TCGA-E9-A1N8-01 2 159170392 159170392 C G CCDC148 Missense_Mutation p.S260T 0.18 tolerated(0.25) possibly_damaging(0.682) TCGA-E9-A1N8-01 2 167159671 167159671 C T SCN9A Missense_Mutation p.R277Q 0.34 tolerated(0.16) benign(0.005) TCGA-E9-A1N8-01 3 158543842 158543842 C T MFSD1 Missense_Mutation p.R492C 0.38 tolerated(0.17) benign(0.005) TCGA-E9-A1N8-01 5 118482941 118482941 T C DMXL1 Intron 0.91 TCGA-E9-A1N8-01 6 136972152 136972152 G C MAP3K5 Missense_Mutation p.I586M 0.39 deleterious(0) benign(0.392) TCGA-E9-A1N8-01 6 136972179 136972179 G C MAP3K5 Missense_Mutation p.I577M 0.36 deleterious(0) benign(0.401) TCGA-E9-A1N8-01 6 136972203 136972203 G T MAP3K5 Silent p.I569I 0.36 TCGA-E9-A1N8-01 6 24409715 24409715 G T MRS2 Nonsense_Mutation p.E110* 0.46 TCGA-E9-A1N8-01 6 90503844 90503844 C T MDN1 Missense_Mutation p.D213N 0.55 benign(0.187) TCGA-E9-A1N8-01 7 151962208 151962208 G C KMT2C Missense_Mutation p.H367D 0.23 probably_damaging(0.997) TCGA-E9-A1N8-01 7 88389215 88389215 G T ZNF804B 5'UTR 0.55 TCGA-E9-A1N8-01 9 36211699 36211699 C T CLTA Silent p.S225S 0.33 TCGA-E9-A1N8-01 9 79324112 79324112 A T PRUNE2 Silent p.G1026G 0.44 TCGA-E9-A1N8-01 X 134305027 134305027 G C CT55 Silent p.G23G 0.08 TCGA-E9-A1N8-01 X 153628945 153628945 T C RPL10 Missense_Mutation p.F157S 0.44 deleterious(0) probably_damaging(0.986) TCGA-E9-A1N8-01 X 31200885 31200885 A T DMD Missense_Mutation p.I3315N 0.36 possibly_damaging(0.506) TCGA-E9-A1N8-01 X 3238507 3238510 AAAG - MXRA5 Frame_Shift_Del p.S1739Ffs*19 0.52 TCGA-E9-A1N8-01 X 48418750 48418750 T C TBC1D25 Missense_Mutation p.V485A 0.58 tolerated(0.38) benign(0) TCGA-E9-A1N9-01 10 18242296 18242296 G A SLC39A12 Missense_Mutation p.A31T 0.11 tolerated(0.74) benign(0) TCGA-E9-A1N9-01 12 110983874 110983874 G A PPTC7 Missense_Mutation p.T138I 0.25 deleterious(0) probably_damaging(1) TCGA-E9-A1N9-01 12 56563343 56563343 G A SMARCC2 Silent p.A864A 0.12 TCGA-E9-A1N9-01 12 93100422 93100422 G A C12orf74 Silent p.E5E 0.23 TCGA-E9-A1N9-01 13 28134050 28134050 C A LNX2 Missense_Mutation p.A433S 0.06 tolerated(0.19) benign(0.001) TCGA-E9-A1N9-01 15 74425882 74425882 G A ISLR2 Missense_Mutation p.D263N 0.33 tolerated(0.29) benign(0.058) TCGA-E9-A1N9-01 16 57789124 57789124 G C KATNB1 Missense_Mutation p.G464R 0.26 deleterious(0) possibly_damaging(0.908) TCGA-E9-A1N9-01 17 41570310 41570310 C A DHX8 Missense_Mutation p.D255E 0.14 tolerated(0.56) benign(0.004) TCGA-E9-A1N9-01 17 42855138 42855138 G C ADAM11 Missense_Mutation p.M659I 0.27 deleterious(0) benign(0.383) TCGA-E9-A1N9-01 17 61619777 61619777 C A KCNH6 Silent p.V710V 0.18 TCGA-E9-A1N9-01 17 74150372 74150372 G A RNF157 Missense_Mutation p.T601M 0.24 deleterious_low_confidence(0.04) benign(0.026) TCGA-E9-A1N9-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.57 TCGA-E9-A1N9-01 17 7842896 7842896 G T CNTROB Missense_Mutation p.Q331H 0.38 deleterious(0) benign(0.076) TCGA-E9-A1N9-01 19 1612420 1612420 C G TCF3 Intron 0.14 TCGA-E9-A1N9-01 19 36002487 36002487 G A DMKN Silent p.S248S 0.14 TCGA-E9-A1N9-01 19 54758227 54758227 C T LILRB5 Splice_Site p.X436_splice 0.44 TCGA-E9-A1N9-01 1 171494044 171494044 A G PRRC2C Silent p.Q378Q 0.25 TCGA-E9-A1N9-01 1 237586462 237586462 A T RYR2 Missense_Mutation p.S307C 0.11 benign(0.014) TCGA-E9-A1N9-01 1 39838233 39838233 T C MACF1 Missense_Mutation p.M2331T 0.12 benign(0.003) TCGA-E9-A1N9-01 1 40702996 40702996 A T RLF Missense_Mutation p.E874D 0.38 tolerated(0.61) benign(0.001) TCGA-E9-A1N9-01 1 52871446 52871446 G C PRPF38A Missense_Mutation p.L75F 0.17 deleterious(0) probably_damaging(0.997) TCGA-E9-A1N9-01 1 74507548 74507548 A C LRRIQ3 Missense_Mutation p.L356R 0.42 tolerated(0.06) benign(0.203) TCGA-E9-A1N9-01 21 34860884 34860884 C G DNAJC28 Missense_Mutation p.A273P 0.29 tolerated(0.27) benign(0.435) TCGA-E9-A1N9-01 21 34861683 34861683 C T DNAJC28 Silent p.V6V 0.38 TCGA-E9-A1N9-01 21 35169711 35169711 C A ITSN1 Missense_Mutation p.L661M 0.09 tolerated(0.28) benign(0.065) TCGA-E9-A1N9-01 21 47910571 47910571 C G DIP2A Silent p.A74A 0.37 TCGA-E9-A1N9-01 2 153530154 153530154 C G PRPF40A Missense_Mutation p.K366N 0.09 deleterious(0) benign(0.403) TCGA-E9-A1N9-01 2 167273377 167273377 T C SCN7A Missense_Mutation p.Y1085C 0.68 deleterious(0.03) probably_damaging(0.997) TCGA-E9-A1N9-01 2 169993902 169993902 C A LRP2 Missense_Mutation p.Q4540H 0.20 benign(0.001) TCGA-E9-A1N9-01 3 180379771 180379771 C T CCDC39 Missense_Mutation p.E79K 0.23 deleterious(0) benign(0.162) TCGA-E9-A1N9-01 3 183963556 183963556 C T ALG3 Missense_Mutation p.V81I 0.52 tolerated(0.13) possibly_damaging(0.742) TCGA-E9-A1N9-01 3 39174316 39174316 T A TTC21A Intron 0.75 TCGA-E9-A1N9-01 4 110268688 110268688 G C SEC24B-AS1 RNA 0.21 TCGA-E9-A1N9-01 4 155160378 155160378 T A DCHS2 Missense_Mutation p.N2024I 0.28 deleterious(0.01) possibly_damaging(0.769) TCGA-E9-A1N9-01 4 155411020 155411020 G T DCHS2 Silent p.P496P 0.23 TCGA-E9-A1N9-01 4 167012408 167012408 T C TLL1 Silent p.L857L 0.17 TCGA-E9-A1N9-01 4 175898856 175898856 A G ADAM29 Missense_Mutation p.E727G 0.13 tolerated(0.25) benign(0.009) TCGA-E9-A1N9-01 4 66356262 66356262 A T EPHA5 Missense_Mutation p.V412D 0.10 deleterious(0) possibly_damaging(0.825) TCGA-E9-A1N9-01 4 70620953 70620953 C A SULT1B1 5'UTR 0.29 TCGA-E9-A1N9-01 4 87671758 87671758 C G PTPN13 Missense_Mutation p.A929G 0.25 tolerated(0.06) probably_damaging(0.97) TCGA-E9-A1N9-01 5 140174742 140174742 C T PCDHA2 Missense_Mutation p.R65W 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-E9-A1N9-01 5 140531962 140531962 G A PCDHB6 Silent p.A708A 0.15 TCGA-E9-A1N9-01 5 140590608 140590608 C T PCDHB12 Missense_Mutation p.A710V 0.25 tolerated_low_confidence(0.12) benign(0.035) TCGA-E9-A1N9-01 5 140752364 140752364 C A PCDHGB3 Silent p.G801G 0.29 TCGA-E9-A1N9-01 5 180665141 180665141 G C GNB2L1 Silent p.R245R 0.15 TCGA-E9-A1N9-01 5 26881562 26881562 C A CDH9 Missense_Mutation p.D685Y 0.14 deleterious(0.02) possibly_damaging(0.866) TCGA-E9-A1N9-01 5 56177954 56177954 C T MAP3K1 Missense_Mutation p.S976F 0.19 deleterious_low_confidence(0) benign(0.347) TCGA-E9-A1N9-01 5 72424228 72424228 A T TMEM171 Missense_Mutation p.I218L 0.18 tolerated(0.12) probably_damaging(0.997) TCGA-E9-A1N9-01 5 9042932 9042932 C G SEMA5A 3'UTR 0.17 TCGA-E9-A1N9-01 6 161007579 161007579 T C LPA Missense_Mutation p.E1344G 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-E9-A1N9-01 6 168351894 168351894 G A MLLT4 Missense_Mutation p.R1280Q 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.852) TCGA-E9-A1N9-01 6 32133979 32133979 G A EGFL8 Missense_Mutation p.G13R 0.34 deleterious(0.03) benign(0.019) TCGA-E9-A1N9-01 6 41704596 41704596 G A PGC Silent p.A387A 0.12 TCGA-E9-A1N9-01 7 123508629 123508629 A G HYAL4 Missense_Mutation p.Y101C 0.16 deleterious(0) probably_damaging(1) TCGA-E9-A1N9-01 7 130298486 130298486 C T COPG2 Missense_Mutation p.E141K 0.10 deleterious(0) possibly_damaging(0.897) TCGA-E9-A1N9-01 7 89790307 89790307 G A STEAP1 Silent p.L91L 0.12 TCGA-E9-A1N9-01 7 93540074 93540074 G T GNGT1 Intron 0.22 TCGA-E9-A1N9-01 8 144662737 144662737 T G EEF1D Missense_Mutation p.E550A 0.08 tolerated(0.08) benign(0.401) TCGA-E9-A1N9-01 8 37734844 37734844 C T RAB11FIP1 Silent p.S199S 0.06 TCGA-E9-A1N9-01 8 43197372 43197372 A C POTEA RNA 0.05 TCGA-E9-A1N9-01 8 97274333 97274333 G A PTDSS1 Missense_Mutation p.R22Q 0.10 tolerated(0.48) probably_damaging(0.933) TCGA-E9-A1N9-01 9 135553785 135553785 A G GTF3C4 Missense_Mutation p.Q260R 0.13 tolerated(0.44) probably_damaging(0.953) TCGA-E9-A1N9-01 9 84530451 84530451 G A SPATA31D5P RNA 0.05 TCGA-E9-A1N9-01 9 90534160 90534161 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.49 TCGA-E9-A1N9-01 X 10442722 10442722 G A MID1 Missense_Mutation p.T361I 0.21 tolerated(0.05) benign(0.365) TCGA-E9-A1N9-01 X 48460302 48460302 C T WDR13 Missense_Mutation p.A321V 0.21 tolerated(0.12) benign(0.065) TCGA-E9-A1N9-01 X 79277801 79277801 C G TBX22 Silent p.S11S 0.08 TCGA-E9-A1NA-01 10 102824709 102824709 G A KAZALD1 3'UTR 0.41 TCGA-E9-A1NA-01 10 123247597 123247597 C T FGFR2 Missense_Mutation p.V633I 0.15 deleterious(0.02) benign(0.005) TCGA-E9-A1NA-01 10 46969289 46969289 C T SYT15 Missense_Mutation p.D58N 0.08 tolerated(0.2) benign(0.004) TCGA-E9-A1NA-01 10 8111513 8111514 - G GATA3 Frame_Shift_Ins p.D336Gfs*17 0.27 TCGA-E9-A1NA-01 10 84711230 84711232 GAA - NRG3 In_Frame_Del p.E355del 0.57 TCGA-E9-A1NA-01 10 95069836 95069836 C T MYOF Missense_Mutation p.G2030S 0.20 tolerated(0.26) benign(0.007) TCGA-E9-A1NA-01 10 99655137 99655137 G A CRTAC1 Missense_Mutation p.R451C 0.33 tolerated(0.08) possibly_damaging(0.794) TCGA-E9-A1NA-01 11 123777193 123777193 G C OR8D4 Missense_Mutation p.E19Q 0.11 tolerated(0.1) benign(0.147) TCGA-E9-A1NA-01 11 124481538 124481538 G A PANX3 Missense_Mutation p.R29H 0.71 tolerated(0.05) benign(0.002) TCGA-E9-A1NA-01 11 22397628 22397628 T A SLC17A6 Missense_Mutation p.F425L 0.52 deleterious(0) benign(0.016) TCGA-E9-A1NA-01 11 51412084 51412084 G A OR4A5 Silent p.F104F 0.29 TCGA-E9-A1NA-01 11 57093910 57093910 C G SSRP1 Missense_Mutation p.E701Q 0.12 deleterious(0.02) unknown(0) TCGA-E9-A1NA-01 11 74800231 74800231 A - OR2AT4 Frame_Shift_Del p.I176Mfs*61 0.41 TCGA-E9-A1NA-01 12 113435403 113435403 G T OAS2 Missense_Mutation p.G236W 0.33 deleterious(0.01) probably_damaging(1) TCGA-E9-A1NA-01 12 132685719 132685719 T G GALNT9 Missense_Mutation p.N85H 0.48 tolerated(0.09) benign(0.02) TCGA-E9-A1NA-01 12 52307765 52307765 T G ACVRL1 Missense_Mutation p.L178R 0.38 deleterious(0) possibly_damaging(0.73) TCGA-E9-A1NA-01 12 56580003 56580003 T C SMARCC2 Missense_Mutation p.K85E 0.15 deleterious(0.03) benign(0.02) TCGA-E9-A1NA-01 12 6879771 6879771 A G PTMS 3'UTR 0.44 TCGA-E9-A1NA-01 12 78530992 78530992 G C NAV3 Missense_Mutation p.G1493R 0.27 deleterious(0) possibly_damaging(0.681) TCGA-E9-A1NA-01 13 113481187 113481187 C A ATP11A Silent p.L401L 0.28 TCGA-E9-A1NA-01 13 31549048 31549048 G C TEX26 3'UTR 0.21 TCGA-E9-A1NA-01 14 24885578 24885578 G T NYNRIN Silent p.R1541R 0.20 TCGA-E9-A1NA-01 14 52493941 52493941 G A NID2 Silent p.A884A 0.36 TCGA-E9-A1NA-01 14 55309630 55309630 C T GCH1 3'UTR 0.41 TCGA-E9-A1NA-01 15 42982291 42982291 G A STARD9 Missense_Mutation p.E2839K 0.50 benign(0.219) TCGA-E9-A1NA-01 15 72320073 72320073 G A MYO9A Missense_Mutation p.R333W 0.42 deleterious(0) probably_damaging(0.988) TCGA-E9-A1NA-01 15 83686848 83686848 G T BTBD1 Missense_Mutation p.Q474K 0.15 deleterious(0) probably_damaging(0.996) TCGA-E9-A1NA-01 16 20422836 20422836 C A ACSM5 Silent p.L10L 0.50 TCGA-E9-A1NA-01 16 67694153 67694153 G C ACD Missense_Mutation p.P77A 0.27 tolerated_low_confidence(0.84) benign(0) TCGA-E9-A1NA-01 16 71805063 71805063 G T AP1G1 Missense_Mutation p.N187K 0.44 deleterious(0) probably_damaging(0.978) TCGA-E9-A1NA-01 16 89753195 89753195 C G CDK10 Missense_Mutation p.P26R 0.32 tolerated(0.07) benign(0.075) TCGA-E9-A1NA-01 17 27228573 27228573 C G DHRS13 Missense_Mutation p.R103P 0.35 deleterious(0) probably_damaging(0.973) TCGA-E9-A1NA-01 18 19020240 19020240 C A GREB1L Missense_Mutation p.F320L 0.20 tolerated(0.67) benign(0.012) TCGA-E9-A1NA-01 18 19021373 19021373 C A GREB1L Missense_Mutation p.S361Y 0.11 tolerated(0.31) possibly_damaging(0.807) TCGA-E9-A1NA-01 18 19021426 19021426 C T GREB1L Missense_Mutation p.P379S 0.12 tolerated(0.08) benign(0.108) TCGA-E9-A1NA-01 18 33691125 33691125 C A SLC39A6 Missense_Mutation p.G671V 0.11 deleterious(0) probably_damaging(1) TCGA-E9-A1NA-01 18 6993719 6993719 C A LAMA1 Silent p.V1643V 0.36 TCGA-E9-A1NA-01 18 72998785 72998785 C G TSHZ1 Missense_Mutation p.H430D 0.44 tolerated(0.28) benign(0.019) TCGA-E9-A1NA-01 19 13934173 13934173 G A ZSWIM4 Missense_Mutation p.E575K 0.29 tolerated(0.12) unknown(0) TCGA-E9-A1NA-01 19 1432662 1432662 C T DAZAP1 Nonsense_Mutation p.Q341* 0.50 TCGA-E9-A1NA-01 19 18004631 18004631 G T SLC5A5 Missense_Mutation p.W626L 0.13 tolerated_low_confidence(0.37) benign(0.013) TCGA-E9-A1NA-01 19 37398926 37398926 C G ZNF829 Missense_Mutation p.G156A 0.27 deleterious(0.02) benign(0.358) TCGA-E9-A1NA-01 19 3771698 3771698 C T RAX2 Missense_Mutation p.G15S 0.37 tolerated(0.21) probably_damaging(0.934) TCGA-E9-A1NA-01 19 50266424 50266424 G C TSKS Missense_Mutation p.S27R 0.41 tolerated(0.15) possibly_damaging(0.795) TCGA-E9-A1NA-01 19 56372911 56372911 T G NLRP4 Silent p.L672L 0.37 TCGA-E9-A1NA-01 19 58437604 58437604 A - ZNF418 Frame_Shift_Del p.C649Afs*38 0.19 TCGA-E9-A1NA-01 19 9060251 9060251 G C MUC16 Silent p.L9065L 0.10 TCGA-E9-A1NA-01 1 149880762 149880762 C A SV2A Missense_Mutation p.W454L 0.55 deleterious(0.01) probably_damaging(1) TCGA-E9-A1NA-01 1 1573174 1573174 C T CDK11B Missense_Mutation p.E475K 0.17 unknown(0) TCGA-E9-A1NA-01 1 157504397 157504397 C A FCRL5 Intron 0.78 TCGA-E9-A1NA-01 1 173751271 173751271 G A KLHL20 Missense_Mutation p.A550T 0.09 deleterious(0.03) benign(0.284) TCGA-E9-A1NA-01 1 181549876 181549876 C G CACNA1E Missense_Mutation p.C305W 0.07 deleterious(0) possibly_damaging(0.892) TCGA-E9-A1NA-01 1 196712641 196712641 A T CFH Missense_Mutation p.S1065C 0.06 deleterious(0.02) possibly_damaging(0.854) TCGA-E9-A1NA-01 1 214568293 214568293 C T PTPN14 Silent p.S265S 0.24 TCGA-E9-A1NA-01 1 226175683 226175683 C G SDE2 Missense_Mutation p.D350H 0.25 tolerated(0.09) benign(0.006) TCGA-E9-A1NA-01 1 240286493 240286493 G T FMN2 Nonsense_Mutation p.E544* 0.11 TCGA-E9-A1NA-01 1 241936093 241936093 G T WDR64 Splice_Site p.X754_splice 0.38 TCGA-E9-A1NA-01 1 34100819 34100819 T C CSMD2 Missense_Mutation p.D1654G 0.23 tolerated(0.08) possibly_damaging(0.542) TCGA-E9-A1NA-01 1 75596508 75596508 C A LHX8 Intron 0.27 TCGA-E9-A1NA-01 20 1961172 1961172 C G PDYN Missense_Mutation p.E188Q 0.40 deleterious(0.02) probably_damaging(0.987) TCGA-E9-A1NA-01 20 2636061 2636061 A G NOP56 Silent p.R220R 0.21 TCGA-E9-A1NA-01 20 55982721 55982721 C A RBM38 Missense_Mutation p.A180D 0.27 deleterious(0) benign(0.149) TCGA-E9-A1NA-01 20 5919166 5919166 C T TRMT6 3'UTR 0.16 TCGA-E9-A1NA-01 21 30445955 30445955 G A CCT8 5'UTR 0.22 TCGA-E9-A1NA-01 2 135809871 135809871 C G RAB3GAP1 5'UTR 0.24 TCGA-E9-A1NA-01 2 141597642 141597642 C A LRP1B Missense_Mutation p.W1709C 0.17 possibly_damaging(0.759) TCGA-E9-A1NA-01 2 16740738 16740738 G C FAM49A Missense_Mutation p.S276C 0.14 deleterious(0) possibly_damaging(0.452) TCGA-E9-A1NA-01 2 178681608 178681608 A G PDE11A Missense_Mutation p.I562T 0.28 tolerated(0.24) probably_damaging(0.921) TCGA-E9-A1NA-01 2 230231632 230231632 C A DNER Missense_Mutation p.D687Y 0.21 deleterious(0) probably_damaging(0.967) TCGA-E9-A1NA-01 2 233721598 233721598 C G GIGYF2 3'UTR 0.15 TCGA-E9-A1NA-01 2 37501751 37501751 G T PRKD3 Silent p.I488I 0.52 TCGA-E9-A1NA-01 2 99217068 99217068 T C COA5 3'UTR 0.45 TCGA-E9-A1NA-01 3 101572147 101572148 - G NFKBIZ Frame_Shift_Ins p.Q261Afs*63 0.60 TCGA-E9-A1NA-01 3 101573907 101573907 G T NFKBIZ Missense_Mutation p.S482I 0.19 deleterious(0) probably_damaging(0.986) TCGA-E9-A1NA-01 3 101574023 101574023 G A NFKBIZ Missense_Mutation p.A521T 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-E9-A1NA-01 3 133473400 133473400 C A TF Missense_Mutation p.N129K 0.16 tolerated(0.26) benign(0.049) TCGA-E9-A1NA-01 3 141162010 141162010 G A ZBTB38 Silent p.P260P 0.23 TCGA-E9-A1NA-01 3 185774898 185774898 C T ETV5 Missense_Mutation p.R392Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-E9-A1NA-01 3 190105967 190105967 C G CLDN16 Nonsense_Mutation p.S20* 0.46 TCGA-E9-A1NA-01 3 191098013 191098013 G A CCDC50 Missense_Mutation p.E348K 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-E9-A1NA-01 3 197249622 197249622 C T BDH1 Missense_Mutation p.D100N 0.53 tolerated(0.09) probably_damaging(0.957) TCGA-E9-A1NA-01 3 50326248 50326248 C T IFRD2 Missense_Mutation p.V400M 0.50 deleterious(0) probably_damaging(0.997) TCGA-E9-A1NA-01 4 152043323 152043323 C A SH3D19 Missense_Mutation p.D765Y 0.18 deleterious(0) possibly_damaging(0.811) TCGA-E9-A1NA-01 4 155300 155300 A C ZNF718 RNA 0.19 TCGA-E9-A1NA-01 4 156825222 156825222 A G TDO2 Missense_Mutation p.T30A 0.37 tolerated(0.75) benign(0.001) TCGA-E9-A1NA-01 4 186274707 186274707 G T SNX25 Missense_Mutation p.L681F 0.19 deleterious(0.01) possibly_damaging(0.646) TCGA-E9-A1NA-01 5 140307514 140307514 C T PCDHAC1 Missense_Mutation p.S346L 0.16 tolerated(0.09) benign(0.099) TCGA-E9-A1NA-01 5 146785290 146785290 C T DPYSL3 Missense_Mutation p.E346K 0.40 deleterious(0) probably_damaging(0.995) TCGA-E9-A1NA-01 5 180431758 180431758 C A BTNL3 Missense_Mutation p.H286Q 0.08 deleterious(0.01) probably_damaging(0.914) TCGA-E9-A1NA-01 5 41200004 41200004 C A C6 Missense_Mutation p.R104I 0.41 deleterious(0) probably_damaging(0.988) TCGA-E9-A1NA-01 5 75757398 75757398 T A IQGAP2 Missense_Mutation p.I17N 0.19 deleterious(0) probably_damaging(0.992) TCGA-E9-A1NA-01 5 78181490 78181490 C A ARSB Missense_Mutation p.W353C 0.24 deleterious(0) probably_damaging(1) TCGA-E9-A1NA-01 5 82500683 82500683 G A XRCC4 Missense_Mutation p.D230N 0.36 tolerated(0.14) probably_damaging(0.989) TCGA-E9-A1NA-01 5 86695302 86695302 T A CCNH Nonsense_Mutation p.K261* 0.36 TCGA-E9-A1NA-01 6 150111162 150111162 A G PCMT1 Missense_Mutation p.S147G 0.31 deleterious(0) probably_damaging(0.988) TCGA-E9-A1NA-01 6 150239333 150239333 C G RAET1G Silent p.L273L 0.22 TCGA-E9-A1NA-01 6 33647763 33647763 C T ITPR3 Silent p.H1359H 0.89 TCGA-E9-A1NA-01 6 43269378 43269378 C T SLC22A7 Silent p.L337L 0.50 TCGA-E9-A1NA-01 7 123150084 123150084 C G IQUB Missense_Mutation p.V135L 0.27 deleterious(0.03) benign(0.1) TCGA-E9-A1NA-01 7 21920374 21920374 C T DNAH11 Missense_Mutation p.L4091F 0.18 benign(0.299) TCGA-E9-A1NA-01 7 33020079 33020079 A C FKBP9 Missense_Mutation p.E269D 0.15 tolerated(0.12) benign(0.001) TCGA-E9-A1NA-01 7 40132802 40132802 C T CDK13 Silent p.L1218L 0.31 TCGA-E9-A1NA-01 7 4153064 4153064 G A SDK1 Missense_Mutation p.R1193H 0.37 deleterious(0) probably_damaging(0.995) TCGA-E9-A1NA-01 7 43546786 43546786 G C HECW1 Missense_Mutation p.E1228Q 0.30 tolerated(0.05) possibly_damaging(0.667) TCGA-E9-A1NA-01 7 6369955 6369955 A G FAM220A 3'UTR 0.43 TCGA-E9-A1NA-01 8 133058114 133058114 G A OC90 Silent p.D21D 0.27 TCGA-E9-A1NA-01 8 133849986 133849986 C T PHF20L1 Silent p.S707S 0.38 TCGA-E9-A1NA-01 8 41572553 41572553 T A ANK1 Nonsense_Mutation p.K581* 0.19 TCGA-E9-A1NA-01 8 99961516 99961516 C G OSR2 Missense_Mutation p.D112E 0.25 tolerated(0.48) benign(0.002) TCGA-E9-A1NA-01 9 104375772 104375772 G A GRIN3A Silent p.T884T 0.09 TCGA-E9-A1NA-01 9 136212104 136212104 C G MED22 Missense_Mutation p.E43Q 0.58 deleterious(0.02) probably_damaging(0.91) TCGA-E9-A1NA-01 9 79267528 79267528 G C PRUNE2 Missense_Mutation p.L2810V 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A1NA-01 9 95227293 95227293 A T ASPN Missense_Mutation p.L207H 0.27 deleterious(0) probably_damaging(1) TCGA-E9-A1NA-01 X 101820656 101820656 G A NXF4 Splice_Site 0.38 TCGA-E9-A1NA-01 X 114357648 114357648 G A LRCH2 Missense_Mutation p.R653C 0.33 deleterious(0) probably_damaging(1) TCGA-E9-A1NA-01 X 122387187 122387187 T C GRIA3 Missense_Mutation p.I101T 0.28 deleterious(0) probably_damaging(0.977) TCGA-E9-A1NA-01 X 130410058 130410058 C T IGSF1 Missense_Mutation p.A930T 0.29 tolerated(0.09) benign(0.207) TCGA-E9-A1NA-01 X 135441470 135441471 - T GPR112 Frame_Shift_Ins p.A2336Sfs*9 0.46 TCGA-E9-A1NA-01 X 140995860 140995860 C A MAGEC1 Silent p.S890S 0.25 TCGA-E9-A1NA-01 X 21857838 21857838 G T MBTPS2 5'UTR 0.46 TCGA-E9-A1NA-01 X 3241188 3241188 A C MXRA5 Silent p.P846P 0.33 TCGA-E9-A1NA-01 X 75651135 75651135 G A MAGEE1 Missense_Mutation p.E938K 0.17 tolerated(0.12) probably_damaging(0.978) TCGA-E9-A1NA-01 X 99891723 99891723 G A TSPAN6 5'UTR 0.11 TCGA-E9-A1NE-01 10 11330504 11330504 T A CELF2 Missense_Mutation p.L322H 0.21 tolerated(0.08) possibly_damaging(0.88) TCGA-E9-A1NE-01 10 12077114 12077114 C A UPF2 Missense_Mutation p.K103N 0.19 tolerated_low_confidence(0.1) unknown(0) TCGA-E9-A1NE-01 11 2975878 2975878 T A NAP1L4 Splice_Site p.X306_splice 0.20 TCGA-E9-A1NE-01 11 35016541 35016541 G A PDHX Missense_Mutation p.G443E 0.06 deleterious(0) probably_damaging(1) TCGA-E9-A1NE-01 11 62744267 62744267 C T SLC22A6 Silent p.%3D 0.04 TCGA-E9-A1NE-01 11 63979191 63979191 A C FERMT3 Missense_Mutation p.Y253S 0.09 deleterious(0) probably_damaging(0.932) TCGA-E9-A1NE-01 11 64674264 64674264 C T ATG2A Silent p.E952E 0.11 TCGA-E9-A1NE-01 11 64674996 64674996 C G ATG2A Splice_Site p.X883_splice 0.16 TCGA-E9-A1NE-01 11 75298904 75298904 C G MAP6 Missense_Mutation p.V548L 0.24 tolerated_low_confidence(0.51) benign(0.001) TCGA-E9-A1NE-01 12 5155008 5155008 G C KCNA5 Missense_Mutation p.K565N 0.20 tolerated_low_confidence(0.06) benign(0.265) TCGA-E9-A1NE-01 12 60173506 60173506 G T SLC16A7 3'UTR 0.14 TCGA-E9-A1NE-01 12 8693375 8693375 A G CLEC4E Missense_Mutation p.S7P 0.08 tolerated(0.2) benign(0.003) TCGA-E9-A1NE-01 14 106452815 106452815 C T IGHV1-2 Nonsense_Mutation p.W69* 0.16 TCGA-E9-A1NE-01 14 59112414 59112414 C T DACT1 Missense_Mutation p.P358L 0.13 deleterious(0.04) probably_damaging(1) TCGA-E9-A1NE-01 15 28090167 28090167 G A OCA2 Silent p.N790N 0.08 TCGA-E9-A1NE-01 15 45406842 45406842 G A DUOXA2 Silent p.Q13Q 0.14 TCGA-E9-A1NE-01 15 90173555 90173555 G A KIF7 Missense_Mutation p.S1094L 0.11 tolerated(0.12) probably_damaging(0.998) TCGA-E9-A1NE-01 16 50667254 50667254 C G NKD1 Missense_Mutation p.I325M 0.09 tolerated(0.22) possibly_damaging(0.465) TCGA-E9-A1NE-01 16 51171279 51171279 G A SALL1 Missense_Mutation p.A1240V 0.10 tolerated(0.12) possibly_damaging(0.879) TCGA-E9-A1NE-01 17 42433630 42433630 G C FAM171A2 Missense_Mutation p.P230R 0.11 deleterious(0) probably_damaging(0.919) TCGA-E9-A1NE-01 17 66986051 66986051 G A ABCA9 Silent p.S1286S 0.05 TCGA-E9-A1NE-01 17 6980307 6980307 C A CLEC10A Splice_Site p.X62_splice 0.11 TCGA-E9-A1NE-01 17 80040267 80040267 C G FASN Missense_Mutation p.E1981D 0.09 tolerated(0.05) benign(0.25) TCGA-E9-A1NE-01 18 59888293 59888293 G T KIAA1468 Missense_Mutation p.A214S 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-E9-A1NE-01 19 44273591 44273591 C T KCNN4 Intron 0.13 TCGA-E9-A1NE-01 19 54646917 54646917 C G CNOT3 Missense_Mutation p.Q30E 0.10 tolerated(0.21) possibly_damaging(0.664) TCGA-E9-A1NE-01 19 55708703 55708703 G C PTPRH Missense_Mutation p.P591R 0.18 probably_damaging(0.985) TCGA-E9-A1NE-01 1 110921957 110921957 G C SLC16A4 Missense_Mutation p.A183G 0.10 tolerated(1) benign(0.002) TCGA-E9-A1NE-01 1 113059026 113059026 G A WNT2B Missense_Mutation p.R223H 0.14 deleterious(0.03) possibly_damaging(0.595) TCGA-E9-A1NE-01 1 207133916 207133916 C T FCAMR Silent p.V435V 0.09 TCGA-E9-A1NE-01 1 209784824 209784824 C G CAMK1G Missense_Mutation p.T281R 0.11 deleterious(0) possibly_damaging(0.82) TCGA-E9-A1NE-01 1 210273640 210273640 T C SYT14 Missense_Mutation p.V378A 0.22 deleterious(0) benign(0.198) TCGA-E9-A1NE-01 1 229633915 229633915 A G NUP133 Missense_Mutation p.F263L 0.12 tolerated(0.45) benign(0.001) TCGA-E9-A1NE-01 1 41012838 41012838 G T ZNF684 Missense_Mutation p.R281S 0.12 tolerated(1) benign(0.004) TCGA-E9-A1NE-01 20 44171491 44171491 G T EPPIN Missense_Mutation p.P80Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-E9-A1NE-01 20 48098719 48098719 C T KCNB1 Missense_Mutation p.R100H 0.20 deleterious(0) probably_damaging(1) TCGA-E9-A1NE-01 22 22064966 22064966 C T YPEL1 Missense_Mutation p.C23Y 0.12 deleterious(0) benign(0.289) TCGA-E9-A1NE-01 22 44079628 44079628 G C EFCAB6 Missense_Mutation p.T417S 0.11 tolerated(0.74) benign(0.004) TCGA-E9-A1NE-01 22 45567527 45567527 C T NUP50 Missense_Mutation p.A39V 0.08 tolerated(0.14) possibly_damaging(0.864) TCGA-E9-A1NE-01 2 136610464 136610464 T G MCM6 Silent p.R550R 0.06 TCGA-E9-A1NE-01 2 190924879 190924879 G A MSTN Missense_Mutation p.P219L 0.14 deleterious(0) possibly_damaging(0.491) TCGA-E9-A1NE-01 2 55746899 55746899 C G CCDC104 5'UTR 0.18 TCGA-E9-A1NE-01 3 150906212 150906212 G C MED12L Missense_Mutation p.L566F 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-E9-A1NE-01 3 56627570 56627570 C A CCDC66 Missense_Mutation p.P374T 0.06 tolerated(0.06) possibly_damaging(0.904) TCGA-E9-A1NE-01 4 15444093 15444093 T A C1QTNF7 Silent p.P187P 0.11 TCGA-E9-A1NE-01 4 155241643 155241643 G C DCHS2 Silent p.S1181S 0.11 TCGA-E9-A1NE-01 4 53610321 53610321 G T ERVMER34-1 Missense_Mutation p.S456Y 0.08 tolerated(0.07) possibly_damaging(0.781) TCGA-E9-A1NE-01 4 68424566 68424566 G C STAP1 Missense_Mutation p.R13S 0.13 tolerated(0.07) probably_damaging(0.997) TCGA-E9-A1NE-01 5 160034008 160034008 C T ATP10B Missense_Mutation p.G975E 0.16 tolerated(0.06) benign(0.25) TCGA-E9-A1NE-01 5 178505799 178505799 T G ZNF354C Missense_Mutation p.I122M 0.17 tolerated(0.24) benign(0.006) TCGA-E9-A1NE-01 5 71756508 71756508 G C ZNF366 Missense_Mutation p.I272M 0.09 tolerated(0.2) possibly_damaging(0.823) TCGA-E9-A1NE-01 5 71756905 71756905 C T ZNF366 Missense_Mutation p.R140H 0.14 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-E9-A1NE-01 5 89924533 89924533 G A GPR98 Missense_Mutation p.A465T 0.07 possibly_damaging(0.811) TCGA-E9-A1NE-01 6 10874983 10874983 G T GCM2 Missense_Mutation p.P256T 0.10 tolerated(0.08) benign(0.114) TCGA-E9-A1NE-01 7 127251186 127251186 G C PAX4 Missense_Mutation p.L322V 0.11 tolerated_low_confidence(0.89) benign(0) TCGA-E9-A1NE-01 7 139824558 139824558 T - KDM7A Frame_Shift_Del p.K305Sfs*17 0.12 TCGA-E9-A1NE-01 7 26412143 26412143 A G SNX10 Missense_Mutation p.D186G 0.15 tolerated(0.08) probably_damaging(0.977) TCGA-E9-A1NE-01 7 55273277 55273277 C A EGFR Silent p.V1200V 0.06 TCGA-E9-A1NE-01 7 86469128 86469128 C T GRM3 Silent p.N766N 0.11 TCGA-E9-A1NE-01 9 137801681 137801681 C G FCN1 Missense_Mutation p.S315T 0.06 deleterious(0) probably_damaging(0.998) TCGA-E9-A1NE-01 9 84202727 84202727 T C TLE1 Missense_Mutation p.T616A 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-E9-A1NE-01 X 111024400 111024400 T A TRPC5 Missense_Mutation p.H712L 0.10 tolerated(0.14) benign(0.028) TCGA-E9-A1NE-01 X 154157894 154157894 C A F8 Missense_Mutation p.D1391Y 0.10 tolerated(0.21) benign(0.139) TCGA-E9-A1NF-01 10 90562626 90562627 - G LIPM 5'UTR 0.09 TCGA-E9-A1NF-01 10 98355176 98355176 G A PIK3AP1 3'UTR 0.16 TCGA-E9-A1NF-01 11 69456177 69456177 G A CCND1 Silent p.L32L 0.16 TCGA-E9-A1NF-01 12 21630747 21630747 A T RECQL Missense_Mutation p.L286Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-E9-A1NF-01 12 88496844 88496844 C T CEP290 Intron 0.50 TCGA-E9-A1NF-01 13 108862458 108862458 C T LIG4 Missense_Mutation p.E387K 0.16 tolerated(0.42) benign(0.004) TCGA-E9-A1NF-01 14 105683971 105683971 G A BRF1 Missense_Mutation p.P561L 0.11 tolerated(0.08) benign(0.002) TCGA-E9-A1NF-01 14 65250970 65250970 C T SPTB Missense_Mutation p.D1333N 0.09 tolerated(0.09) possibly_damaging(0.875) TCGA-E9-A1NF-01 14 73753872 73753872 T A NUMB Missense_Mutation p.T201S 0.36 tolerated(0.44) benign(0.222) TCGA-E9-A1NF-01 15 100267769 100267769 G C LYSMD4 3'UTR 0.23 TCGA-E9-A1NF-01 15 62277090 62277090 G C VPS13C Missense_Mutation p.Q563E 0.15 tolerated(0.36) benign(0.001) TCGA-E9-A1NF-01 15 66601047 66601047 G A DIS3L Silent p.R141R 0.05 TCGA-E9-A1NF-01 15 77346562 77346562 G T TSPAN3 Missense_Mutation p.N130K 0.49 deleterious(0.03) benign(0.142) TCGA-E9-A1NF-01 16 51174727 51174727 C T SALL1 Missense_Mutation p.R469H 0.27 deleterious(0) probably_damaging(1) TCGA-E9-A1NF-01 17 16029456 16029457 - T NCOR1 Frame_Shift_Ins p.T525Nfs*11 0.47 TCGA-E9-A1NF-01 17 7579349 7579349 A C TP53 Missense_Mutation p.F113C 0.37 deleterious(0) probably_damaging(1) TCGA-E9-A1NF-01 19 10097049 10097049 G A COL5A3 Missense_Mutation p.P765L 0.52 unknown(0) TCGA-E9-A1NF-01 19 11129649 11129649 G A SMARCA4 Missense_Mutation p.A819T 0.07 benign(0.006) TCGA-E9-A1NF-01 19 16606648 16606648 C T CALR3 Missense_Mutation p.R36Q 0.18 deleterious(0.02) probably_damaging(1) TCGA-E9-A1NF-01 19 17160625 17160625 T C HAUS8 3'UTR 0.44 TCGA-E9-A1NF-01 19 2416579 2416579 C T TMPRSS9 Missense_Mutation p.L563F 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-E9-A1NF-01 19 47503802 47503802 T - ARHGAP35 Frame_Shift_Del p.S1453Lfs*346 0.24 TCGA-E9-A1NF-01 19 50335258 50335258 C T MED25 Silent p.Y432Y 0.10 TCGA-E9-A1NF-01 19 50735219 50735219 C T MYH14 Missense_Mutation p.R336W 0.67 deleterious(0) possibly_damaging(0.888) TCGA-E9-A1NF-01 1 156568029 156568030 - CCA GPATCH4 In_Frame_Ins p.V83dup 0.33 TCGA-E9-A1NF-01 1 158298045 158298045 G A CD1B Missense_Mutation p.S328L 0.19 tolerated(0.06) possibly_damaging(0.78) TCGA-E9-A1NF-01 1 1685731 1685731 T C NADK Missense_Mutation p.Q457R 0.21 deleterious(0.02) possibly_damaging(0.688) TCGA-E9-A1NF-01 1 17975064 17975064 C G ARHGEF10L Missense_Mutation p.P763R 0.14 tolerated(0.22) probably_damaging(0.939) TCGA-E9-A1NF-01 1 229622242 229622242 C G NUP133 Missense_Mutation p.G459A 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-E9-A1NF-01 1 233353644 233353644 C T PCNXL2 Splice_Site p.X897_splice 0.18 TCGA-E9-A1NF-01 1 240370352 240370352 C T FMN2 Missense_Mutation p.S747F 0.43 unknown(0) TCGA-E9-A1NF-01 1 240370552 240370552 C T FMN2 Missense_Mutation p.P814S 0.41 unknown(0) TCGA-E9-A1NF-01 1 240370987 240370987 C T FMN2 Missense_Mutation p.L959F 0.36 unknown(0) TCGA-E9-A1NF-01 1 247978446 247978446 C T OR14A16 Missense_Mutation p.A196T 0.09 tolerated(0.39) benign(0.14) TCGA-E9-A1NF-01 1 29095679 29095679 T G YTHDF2 3'UTR 0.30 TCGA-E9-A1NF-01 1 63999242 63999242 G A EFCAB7 Missense_Mutation p.E202K 0.43 tolerated(0.34) benign(0.016) TCGA-E9-A1NF-01 1 64011686 64011686 G C EFCAB7 Missense_Mutation p.V302L 0.14 tolerated(0.18) benign(0.071) TCGA-E9-A1NF-01 20 2097463 2097463 T C STK35 Silent p.I348I 0.40 TCGA-E9-A1NF-01 20 30697384 30697384 C T TM9SF4 5'UTR 0.33 TCGA-E9-A1NF-01 20 33370003 33370003 G C NCOA6 Missense_Mutation p.F52L 0.35 probably_damaging(0.989) TCGA-E9-A1NF-01 20 42744310 42744310 C T JPH2 Missense_Mutation p.E669K 0.14 tolerated(0.14) benign(0.051) TCGA-E9-A1NF-01 20 42831600 42831600 C A OSER1 Splice_Site p.X64_splice 0.21 TCGA-E9-A1NF-01 22 22869931 22869931 C T ZNF280A Silent p.K8K 0.10 TCGA-E9-A1NF-01 2 109347330 109347330 G A RANBP2 Missense_Mutation p.E81K 0.28 tolerated(0.1) benign(0.213) TCGA-E9-A1NF-01 2 120903830 120903830 T C EPB41L5 Silent p.H586H 0.25 TCGA-E9-A1NF-01 2 144710400 144710400 C T GTDC1 Missense_Mutation p.V381M 0.26 deleterious(0) probably_damaging(0.962) TCGA-E9-A1NF-01 2 207638973 207638973 G A FASTKD2 Missense_Mutation p.E427K 0.66 deleterious(0.03) probably_damaging(0.998) TCGA-E9-A1NF-01 2 208994365 208994365 C T CRYGC Missense_Mutation p.E18K 0.16 deleterious(0) possibly_damaging(0.476) TCGA-E9-A1NF-01 2 69040539 69040539 G A ARHGAP25 Silent p.A265A 0.10 TCGA-E9-A1NF-01 3 133664056 133664056 G A SLCO2A1 Silent p.C448C 0.35 TCGA-E9-A1NF-01 3 196434456 196434456 C A CEP19 Missense_Mutation p.C157F 0.14 deleterious(0) probably_damaging(1) TCGA-E9-A1NF-01 4 177050008 177050008 A G WDR17 Missense_Mutation p.K328E 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-E9-A1NF-01 5 74325091 74325091 G A GCNT4 Missense_Mutation p.P258S 0.12 tolerated(1) benign(0.006) TCGA-E9-A1NF-01 5 82834037 82834037 G T VCAN Nonsense_Mutation p.E1739* 0.32 TCGA-E9-A1NF-01 6 106649944 106649944 G A ATG5 Silent p.F198F 0.10 TCGA-E9-A1NF-01 6 147049874 147049874 C A ADGB Missense_Mutation p.F839L 0.18 deleterious(0.03) possibly_damaging(0.688) TCGA-E9-A1NF-01 6 4069649 4069649 C T FAM217A Missense_Mutation p.D270N 0.46 deleterious(0.01) benign(0.397) TCGA-E9-A1NF-01 6 46672386 46672386 C T PLA2G7 Missense_Mutation p.D413N 0.23 tolerated(0.23) benign(0.075) TCGA-E9-A1NF-01 6 46678354 46678354 C T PLA2G7 Silent p.L235L 0.35 TCGA-E9-A1NF-01 6 56422155 56422173 CAATTGACAAGGGCCCAAG - DST Frame_Shift_Del p.L2239Tfs*5 0.43 TCGA-E9-A1NF-01 7 140107556 140107556 T G RAB19 Missense_Mutation p.F37C 0.17 deleterious(0) probably_damaging(0.999) TCGA-E9-A1NF-01 7 64649422 64649422 C T INTS4L1 RNA 0.25 TCGA-E9-A1NF-01 8 48841654 48841654 C G PRKDC Missense_Mutation p.E713Q 0.12 probably_damaging(1) TCGA-E9-A1NF-01 9 113065911 113065911 C T TXNDC8 3'UTR 0.37 TCGA-E9-A1NF-01 9 8492939 8492939 G A PTPRD Missense_Mutation p.S797F 0.13 deleterious(0) probably_damaging(0.996) TCGA-E9-A1NF-01 X 53284002 53284002 G T IQSEC2 Missense_Mutation p.R371S 0.33 deleterious(0) probably_damaging(0.951) TCGA-E9-A1NG-01 11 62529031 62529031 G A POLR2G 5'UTR 0.18 TCGA-E9-A1NG-01 12 122242717 122242717 G A SETD1B Missense_Mutation p.R25K 0.26 benign(0.171) TCGA-E9-A1NG-01 12 130923032 130923032 C T RIMBP2 Missense_Mutation p.V495I 0.15 tolerated(0.27) benign(0.003) TCGA-E9-A1NG-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.15 deleterious(0) possibly_damaging(0.479) TCGA-E9-A1NG-01 12 6697097 6697097 G A CHD4 Missense_Mutation p.R1162W 0.15 deleterious(0) benign(0.092) TCGA-E9-A1NG-01 12 75895723 75895723 G A KRR1 Nonsense_Mutation p.Q297* 0.11 TCGA-E9-A1NG-01 16 85701854 85701854 A G GSE1 Missense_Mutation p.N1080S 0.20 deleterious(0.04) possibly_damaging(0.7) TCGA-E9-A1NG-01 17 28417634 28417634 G A EFCAB5 Silent p.V1293V 0.17 TCGA-E9-A1NG-01 17 61562349 61562349 A G ACE Intron 0.13 TCGA-E9-A1NG-01 18 64172532 64172532 A T CDH19 Silent p.I612I 0.23 TCGA-E9-A1NG-01 1 158584095 158584095 C A SPTA1 Missense_Mutation p.D2264Y 0.15 deleterious(0.03) benign(0.132) TCGA-E9-A1NG-01 1 55637338 55637338 T C USP24 Missense_Mutation p.D239G 0.14 deleterious(0) probably_damaging(0.941) TCGA-E9-A1NG-01 1 86942163 86942163 C T CLCA1 Nonsense_Mutation p.R162* 0.16 TCGA-E9-A1NG-01 1 95311008 95311008 C T SLC44A3 Silent p.L354L 0.19 TCGA-E9-A1NG-01 20 44333658 44333658 T A WFDC10B 5'UTR 0.19 TCGA-E9-A1NG-01 2 160980373 160980373 G A ITGB6 Missense_Mutation p.A637V 0.09 tolerated(0.22) benign(0.297) TCGA-E9-A1NG-01 2 166535936 166535936 C A CSRNP3 Missense_Mutation p.F477L 0.13 tolerated_low_confidence(0.06) benign(0.013) TCGA-E9-A1NG-01 3 112358410 112358410 G A CCDC80 Missense_Mutation p.R115C 0.11 deleterious_low_confidence(0) benign(0.136) TCGA-E9-A1NG-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-E9-A1NG-01 8 28989832 28989832 G A KIF13B Missense_Mutation p.R979W 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-E9-A1NG-01 X 65420445 65420445 C T HEPH Missense_Mutation p.A697V 0.20 tolerated(0.32) benign(0.184) TCGA-E9-A1NH-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.33 TCGA-E9-A1NH-01 11 33129459 33129459 G A CSTF3 Missense_Mutation p.P116S 0.38 tolerated(0.29) benign(0.008) TCGA-E9-A1NH-01 11 58345513 58345513 T C LPXN Missense_Mutation p.T3A 0.52 tolerated_low_confidence(0.24) benign(0) TCGA-E9-A1NH-01 12 108137052 108137052 T C PRDM4 Missense_Mutation p.H468R 0.40 tolerated(0.18) possibly_damaging(0.471) TCGA-E9-A1NH-01 12 125834300 125834300 A G TMEM132B Missense_Mutation p.K119E 0.20 deleterious(0.01) benign(0.234) TCGA-E9-A1NH-01 12 50480656 50480656 A G SMARCD1 Missense_Mutation p.I176V 0.21 tolerated(0.4) benign(0.005) TCGA-E9-A1NH-01 13 101167710 101167710 C T PCCA Silent p.A643A 0.17 TCGA-E9-A1NH-01 13 108882113 108882113 G A ABHD13 Missense_Mutation p.D183N 0.18 tolerated(0.68) possibly_damaging(0.456) TCGA-E9-A1NH-01 14 24114451 24114451 A G DHRS2 Silent p.P281P 0.38 TCGA-E9-A1NH-01 16 67070564 67070564 A G CBFB Missense_Mutation p.N63S 0.49 tolerated(0.06) benign(0.419) TCGA-E9-A1NH-01 17 1382973 1382973 G C MYO1C Silent p.V311V 0.15 TCGA-E9-A1NH-01 17 21318742 21318742 G A KCNJ12 Missense_Mutation p.G30S 0.09 tolerated(0.13) benign(0.405) TCGA-E9-A1NH-01 17 37672031 37672031 A G CDK12 Missense_Mutation p.N939S 0.20 possibly_damaging(0.487) TCGA-E9-A1NH-01 19 39103372 39103372 C - MAP4K1 Frame_Shift_Del p.E182Kfs*7 0.41 TCGA-E9-A1NH-01 19 44792859 44792859 T C ZNF235 Silent p.K243K 0.36 TCGA-E9-A1NH-01 19 4512292 4512292 C T PLIN4 Silent p.V546V 0.33 TCGA-E9-A1NH-01 19 55344245 55344245 C T KIR3DL1 3'Flank 0.14 TCGA-E9-A1NH-01 19 58864366 58864366 G A A1BG Missense_Mutation p.R90C 0.19 deleterious(0) possibly_damaging(0.86) TCGA-E9-A1NH-01 19 8642259 8642259 G A MYO1F 5'UTR 0.28 TCGA-E9-A1NH-01 1 207679281 207679281 G T CR1 Missense_Mutation p.A52S 0.24 tolerated(0.07) probably_damaging(0.918) TCGA-E9-A1NH-01 1 2129485 2129485 G - C1orf86 5'Flank 0.42 TCGA-E9-A1NH-01 1 92709922 92709922 G C C1orf146 Silent p.L103L 0.16 TCGA-E9-A1NH-01 2 113088873 113088873 G A ZC3H6 Missense_Mutation p.S793N 0.31 tolerated(0.1) possibly_damaging(0.678) TCGA-E9-A1NH-01 2 127806047 127806047 C T BIN1 3'UTR 0.19 TCGA-E9-A1NH-01 2 201460064 201460064 G T AOX1 Missense_Mutation p.R58L 0.35 deleterious(0) benign(0.234) TCGA-E9-A1NH-01 2 32445456 32445456 T G SLC30A6 Missense_Mutation p.S394A 0.30 tolerated_low_confidence(0.29) benign(0.012) TCGA-E9-A1NH-01 2 3727551 3727551 C T ALLC Nonsense_Mutation p.R89* 0.06 TCGA-E9-A1NH-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.60 tolerated(0.11) possibly_damaging(0.529) TCGA-E9-A1NH-01 3 52723315 52723315 C T GNL3 Intron 0.24 TCGA-E9-A1NH-01 3 62248319 62248319 G T PTPRG Intron 0.11 TCGA-E9-A1NH-01 5 35873588 35873588 A T IL7R Missense_Mutation p.N182Y 0.36 tolerated(0.06) benign(0.132) TCGA-E9-A1NH-01 6 157528608 157528608 C - ARID1B Frame_Shift_Del p.Y2112Mfs*4 0.30 TCGA-E9-A1NH-01 6 38759340 38759340 T C DNAH8 Silent p.L714L 0.33 TCGA-E9-A1NH-01 7 20418798 20418798 C T ITGB8 Silent p.N171N 0.35 TCGA-E9-A1NH-01 8 35648167 35648167 G A UNC5D 3'Flank 0.13 TCGA-E9-A1NH-01 9 119097220 119097220 C T PAPPA Nonsense_Mutation p.Q1160* 0.36 TCGA-E9-A1NH-01 9 121929686 121929686 G A BRINP1 Silent p.D654D 0.20 TCGA-E9-A1NH-01 9 128124921 128124921 A T GAPVD1 Missense_Mutation p.I1454F 0.09 deleterious(0) probably_damaging(0.976) TCGA-E9-A1NH-01 9 131456207 131456209 AGA - SET In_Frame_Del p.E247del 0.20 TCGA-E9-A1NH-01 9 133748380 133748380 C A ABL1 Silent p.I366I 0.33 TCGA-E9-A1NH-01 9 35724267 35724267 C T TLN1 Silent p.L192L 0.36 TCGA-E9-A1NH-01 X 48545241 48545241 C T WAS Nonsense_Mutation p.R211* 0.22 TCGA-E9-A1QZ-01 10 124358309 124358309 C T DMBT1 Silent p.A992A 0.09 TCGA-E9-A1QZ-01 10 71175920 71175920 C T TACR2 Missense_Mutation p.V54I 0.19 tolerated(0.05) possibly_damaging(0.447) TCGA-E9-A1QZ-01 10 81921705 81921705 G T ANXA11 Missense_Mutation p.A389D 0.17 tolerated(0.06) probably_damaging(0.955) TCGA-E9-A1QZ-01 11 92534071 92534071 C A FAT3 Missense_Mutation p.A2631E 0.08 benign(0.375) TCGA-E9-A1QZ-01 12 110006636 110006636 G C MMAB Missense_Mutation p.P77A 0.10 tolerated(0.24) benign(0.004) TCGA-E9-A1QZ-01 12 4708239 4708239 C A DYRK4 Missense_Mutation p.F202L 0.11 deleterious(0.02) possibly_damaging(0.791) TCGA-E9-A1QZ-01 15 81225606 81225606 C T KIAA1199 Silent p.F938F 0.07 TCGA-E9-A1QZ-01 17 27239625 27239625 G A PHF12 Missense_Mutation p.T655I 0.12 deleterious(0.01) benign(0.039) TCGA-E9-A1QZ-01 17 440372 440372 G A VPS53 Silent p.Y637Y 0.12 TCGA-E9-A1QZ-01 17 5331509 5331509 C - RPAIN Frame_Shift_Del p.S204Vfs*4 0.09 TCGA-E9-A1QZ-01 17 78073416 78073416 C A CCDC40 Missense_Mutation p.Q1091K 0.16 tolerated(0.28) benign(0.015) TCGA-E9-A1QZ-01 19 43382212 43382212 A G PSG1 Missense_Mutation p.Y95H 0.19 tolerated(0.18) benign(0.058) TCGA-E9-A1QZ-01 1 186645997 186645997 G A PTGS2 Missense_Mutation p.R231C 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A1QZ-01 2 192701286 192701286 G T SDPR Missense_Mutation p.A214D 0.12 tolerated(0.66) benign(0.005) TCGA-E9-A1QZ-01 3 52469904 52469904 C A SEMA3G Missense_Mutation p.K688N 0.09 tolerated(0.21) benign(0.028) TCGA-E9-A1QZ-01 4 17819064 17819064 A T NCAPG Missense_Mutation p.N319I 0.11 tolerated(0.25) benign(0.004) TCGA-E9-A1QZ-01 4 71115083 71115083 G T CSN3 Silent p.V152V 0.16 TCGA-E9-A1QZ-01 5 179028974 179028974 C T RUFY1 Silent p.L615L 0.15 TCGA-E9-A1QZ-01 5 31532474 31532474 A G C5orf22 5'UTR 0.14 TCGA-E9-A1QZ-01 5 34024111 34024111 C A C1QTNF3 Missense_Mutation p.V235L 0.15 tolerated(0.19) benign(0.228) TCGA-E9-A1QZ-01 6 119228580 119228580 T - ASF1A Frame_Shift_Del p.L140Wfs*54 0.35 TCGA-E9-A1QZ-01 7 31735165 31735165 T A PPP1R17 Missense_Mutation p.N55K 0.13 tolerated_low_confidence(0.22) benign(0.241) TCGA-E9-A1QZ-01 9 111670661 111670661 T C IKBKAP Missense_Mutation p.T462A 0.14 deleterious(0.05) possibly_damaging(0.803) TCGA-E9-A1QZ-01 X 107823802 107823802 A G COL4A5 Missense_Mutation p.I274V 0.16 unknown(0) TCGA-E9-A1QZ-01 X 130408064 130408064 G A IGSF1 Nonsense_Mutation p.R1295* 0.10 TCGA-E9-A1R0-01 10 1208532 1208532 G A LINC00200 RNA 0.08 TCGA-E9-A1R0-01 11 117982545 117982545 G A TMPRSS4 Missense_Mutation p.D225N 0.26 tolerated(0.97) benign(0.004) TCGA-E9-A1R0-01 11 36300038 36300038 G A COMMD9 Silent p.I102I 0.31 TCGA-E9-A1R0-01 12 48538878 48538878 G A PFKM Nonsense_Mutation p.W757* 0.26 TCGA-E9-A1R0-01 12 49579528 49579528 C T TUBA1A Silent p.E207E 0.07 TCGA-E9-A1R0-01 12 9346694 9346694 C T PZP Silent p.S411S 0.14 TCGA-E9-A1R0-01 13 103343304 103343304 C G METTL21C Missense_Mutation p.K47N 0.15 tolerated(0.24) benign(0.001) TCGA-E9-A1R0-01 14 20389605 20389605 C T OR4K5 Silent p.P280P 0.29 TCGA-E9-A1R0-01 14 86088051 86088051 G A FLRT2 Missense_Mutation p.V65I 0.29 tolerated(0.27) benign(0.095) TCGA-E9-A1R0-01 16 26147750 26147750 C T HS3ST4 3'UTR 0.56 TCGA-E9-A1R0-01 16 67645418 67645418 T C CTCF Missense_Mutation p.F228S 0.39 deleterious(0.01) benign(0.306) TCGA-E9-A1R0-01 18 21894248 21894248 G A OSBPL1A Missense_Mutation p.R312W 0.12 deleterious(0.01) possibly_damaging(0.884) TCGA-E9-A1R0-01 19 16040359 16040359 T C CYP4F11 Missense_Mutation p.Y84C 0.10 deleterious(0.02) benign(0.337) TCGA-E9-A1R0-01 19 37643429 37643429 G A ZNF585A Nonsense_Mutation p.R403* 0.04 TCGA-E9-A1R0-01 1 242383388 242383388 C T PLD5 Missense_Mutation p.A213T 0.23 tolerated(0.39) possibly_damaging(0.787) TCGA-E9-A1R0-01 1 42049238 42049238 C T HIVEP3 Missense_Mutation p.A411T 0.41 probably_damaging(0.998) TCGA-E9-A1R0-01 1 76877751 76877751 G A ST6GALNAC3 Missense_Mutation p.G91D 0.24 probably_damaging(0.983) TCGA-E9-A1R0-01 2 179615666 179615666 C T TTN Intron 0.23 TCGA-E9-A1R0-01 2 27804427 27804427 G A C2orf16 Missense_Mutation p.R1663H 0.33 tolerated(0.3) possibly_damaging(0.791) TCGA-E9-A1R0-01 2 80874927 80874927 G A CTNNA2 Missense_Mutation p.R883Q 0.32 deleterious(0.03) possibly_damaging(0.852) TCGA-E9-A1R0-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-E9-A1R0-01 3 47032777 47032777 G A NBEAL2 Missense_Mutation p.V209I 0.10 tolerated(1) benign(0.003) TCGA-E9-A1R0-01 3 57357142 57357142 G C DNAH12 Missense_Mutation p.L191V 0.25 deleterious(0.03) probably_damaging(0.981) TCGA-E9-A1R0-01 4 129925014 129925014 T C SCLT1 Missense_Mutation p.K103R 0.24 tolerated(0.32) possibly_damaging(0.449) TCGA-E9-A1R0-01 4 152681967 152681967 C T PET112 Silent p.T56T 0.17 TCGA-E9-A1R0-01 5 137803326 137803326 C T EGR1 Silent p.F396F 0.27 TCGA-E9-A1R0-01 6 117861948 117861948 G A DCBLD1 Missense_Mutation p.V407M 0.38 tolerated(0.1) possibly_damaging(0.781) TCGA-E9-A1R0-01 8 53074080 53074080 G A ST18 Silent p.I483I 0.14 TCGA-E9-A1R0-01 8 82355591 82355591 T A PMP2 3'UTR 0.11 TCGA-E9-A1R0-01 X 100910650 100910650 C G ARMCX2 3'UTR 0.30 TCGA-E9-A1R0-01 X 117785950 117785950 G C DOCK11 Silent p.L1535L 0.24 TCGA-E9-A1R0-01 X 122840715 122840715 T A THOC2 Missense_Mutation p.D72V 0.24 deleterious(0) benign(0.03) TCGA-E9-A1R0-01 X 123181291 123181291 G A STAG2 Missense_Mutation p.R252Q 0.21 deleterious(0.03) possibly_damaging(0.843) TCGA-E9-A1R0-01 X 135098842 135098842 C T SLC9A6 Silent p.I425I 0.24 TCGA-E9-A1R0-01 X 140270877 140270877 C T LDOC1 Missense_Mutation p.M110I 0.23 tolerated(0.08) benign(0.01) TCGA-E9-A1R2-01 10 7605192 7605192 T A ITIH5 Missense_Mutation p.I895F 0.29 deleterious(0) probably_damaging(0.995) TCGA-E9-A1R2-01 11 118038933 118038933 G - SCN2B Frame_Shift_Del p.S106Afs*7 0.39 TCGA-E9-A1R2-01 11 118948974 118948974 C T VPS11 Missense_Mutation p.S617L 0.38 tolerated(0.68) benign(0.037) TCGA-E9-A1R2-01 11 8959263 8959267 AGAAG - ASCL3 Frame_Shift_Del p.L148Vfs*3 0.57 TCGA-E9-A1R2-01 12 104713335 104713335 C T TXNRD1 Missense_Mutation p.P321S 0.39 deleterious(0) benign(0.082) TCGA-E9-A1R2-01 12 44180616 44180616 A T IRAK4 3'UTR 0.45 TCGA-E9-A1R2-01 12 4920003 4920003 G T KCNA6 Missense_Mutation p.V266L 0.44 tolerated(0.13) probably_damaging(0.996) TCGA-E9-A1R2-01 12 58128453 58128453 C T AGAP2 Missense_Mutation p.G413S 0.32 deleterious(0) probably_damaging(1) TCGA-E9-A1R2-01 13 32914938 32914938 T - BRCA2 Frame_Shift_Del p.V2151Ffs*17 0.24 TCGA-E9-A1R2-01 15 43644127 43644127 G C ADAL Missense_Mutation p.R324T 0.31 tolerated(0.28) benign(0.001) TCGA-E9-A1R2-01 15 48766788 48766788 T C FBN1 Missense_Mutation p.T1342A 0.36 benign(0.04) TCGA-E9-A1R2-01 16 2983148 2983148 G A FLYWCH1 Missense_Mutation p.E271K 0.26 deleterious(0.05) possibly_damaging(0.626) TCGA-E9-A1R2-01 16 50328657 50328657 G A ADCY7 Missense_Mutation p.A315T 0.35 deleterious(0) probably_damaging(1) TCGA-E9-A1R2-01 17 30536533 30536533 C G RHOT1 Intron 0.40 TCGA-E9-A1R2-01 17 37369367 37369373 CCCGGTC - STAC2 Frame_Shift_Del p.D336Lfs*12 0.44 TCGA-E9-A1R2-01 17 40557214 40557214 T A PTRF Nonsense_Mutation p.K222* 0.37 TCGA-E9-A1R2-01 17 79410930 79410930 G T RP11-1055B8.7 Nonsense_Mutation p.E771* 0.19 TCGA-E9-A1R2-01 18 67759384 67759384 C A RTTN Missense_Mutation p.A1369S 0.11 tolerated(0.09) possibly_damaging(0.689) TCGA-E9-A1R2-01 18 67759385 67759385 C A RTTN Missense_Mutation p.L1368F 0.11 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R2-01 19 12491466 12491466 C G CTD-3105H18.14 3'UTR 0.33 TCGA-E9-A1R2-01 19 15536452 15536452 G C WIZ Silent p.V403V 0.26 TCGA-E9-A1R2-01 19 17988649 17988649 C T SLC5A5 Silent p.C272C 0.34 TCGA-E9-A1R2-01 19 40741973 40741973 C T AKT2 Nonsense_Mutation p.W333* 0.34 TCGA-E9-A1R2-01 19 40902282 40902282 G T PRX Silent p.L659L 0.27 TCGA-E9-A1R2-01 19 4354359 4354359 C A MPND Missense_Mutation p.A263D 0.34 deleterious(0.03) possibly_damaging(0.797) TCGA-E9-A1R2-01 19 9577765 9577765 G A ZNF560 Nonsense_Mutation p.R620* 0.25 TCGA-E9-A1R2-01 1 12175747 12175747 T A TNFRSF8 Missense_Mutation p.Y303N 0.36 tolerated(0.2) benign(0.185) TCGA-E9-A1R2-01 1 12704575 12704575 C T AADACL4 Missense_Mutation p.P4S 0.70 tolerated(0.06) unknown(0) TCGA-E9-A1R2-01 1 152128042 152128042 A G RPTN Silent p.Y511Y 0.54 TCGA-E9-A1R2-01 1 155490889 155490889 A G ASH1L Splice_Site p.X140_splice 0.07 TCGA-E9-A1R2-01 1 156812803 156812803 T A INSRR Missense_Mutation p.H1040L 0.23 deleterious(0) benign(0.26) TCGA-E9-A1R2-01 1 170007569 170007569 C T KIFAP3 Missense_Mutation p.D127N 0.27 tolerated(0.27) benign(0.036) TCGA-E9-A1R2-01 1 53267568 53267568 T A ZYG11B Silent p.L521L 0.41 TCGA-E9-A1R2-01 1 92647600 92647600 G C KIAA1107 Missense_Mutation p.E1016Q 0.43 deleterious(0.01) probably_damaging(0.96) TCGA-E9-A1R2-01 20 23016840 23016840 C T SSTR4 Silent p.A240A 0.43 TCGA-E9-A1R2-01 20 60578806 60578811 CTGGAT - TAF4 In_Frame_Del p.I783_Q784del 0.39 TCGA-E9-A1R2-01 21 30968708 30968708 C G GRIK1-AS2 Missense_Mutation p.L13V 0.11 possibly_damaging(0.578) TCGA-E9-A1R2-01 21 47407548 47407548 C T COL6A1 Missense_Mutation p.R262W 0.22 deleterious(0.02) unknown(0) TCGA-E9-A1R2-01 2 128065082 128065082 G C MAP3K2 3'UTR 0.28 TCGA-E9-A1R2-01 2 152580858 152580858 C T NEB Nonsense_Mutation p.W176* 0.26 TCGA-E9-A1R2-01 2 27425725 27425725 G C SLC5A6 Missense_Mutation p.L411V 0.33 tolerated(0.08) possibly_damaging(0.759) TCGA-E9-A1R2-01 2 32361954 32361954 G T SPAST Missense_Mutation p.D444Y 0.23 deleterious(0) probably_damaging(1) TCGA-E9-A1R2-01 3 100467337 100467337 G T TFG Missense_Mutation p.G389C 0.43 tolerated_low_confidence(0.08) benign(0.036) TCGA-E9-A1R2-01 3 184018176 184018176 C G PSMD2 Missense_Mutation p.P101A 0.32 deleterious(0.01) benign(0.056) TCGA-E9-A1R2-01 3 89521635 89521635 C G EPHA3 Missense_Mutation p.D904E 0.31 tolerated(0.44) possibly_damaging(0.747) TCGA-E9-A1R2-01 4 109571810 109571810 A G OSTC 5'UTR 0.41 TCGA-E9-A1R2-01 4 122737590 122737590 C G EXOSC9 Missense_Mutation p.P425R 0.38 deleterious_low_confidence(0.02) benign(0.091) TCGA-E9-A1R2-01 4 186370764 186370764 A G C4orf47 Missense_Mutation p.K299R 0.32 tolerated(0.21) benign(0.271) TCGA-E9-A1R2-01 4 40337857 40337857 A C CHRNA9 Silent p.A26A 0.25 TCGA-E9-A1R2-01 4 55130250 55130250 A G PDGFRA Intron 0.27 TCGA-E9-A1R2-01 4 76692017 76692033 ACTTCTCTTTTAAAACA - USO1 Frame_Shift_Del p.S150Rfs*31 0.59 TCGA-E9-A1R2-01 5 107216824 107216824 A G FBXL17 Missense_Mutation p.C627R 0.45 deleterious(0) probably_damaging(0.995) TCGA-E9-A1R2-01 5 140514966 140514966 G - PCDHB5 5'UTR 0.44 TCGA-E9-A1R2-01 5 140764619 140764619 G A PCDHGA7 Missense_Mutation p.R718H 0.35 tolerated_low_confidence(0.1) benign(0.028) TCGA-E9-A1R2-01 5 179745913 179745913 C T GFPT2 Missense_Mutation p.D280N 0.68 tolerated(0.26) benign(0.021) TCGA-E9-A1R2-01 5 52240786 52240786 G C ITGA1 Missense_Mutation p.S1100T 0.29 tolerated(0.65) benign(0.023) TCGA-E9-A1R2-01 6 29974791 29974791 G C ZNRD1-AS1 Intron 0.19 TCGA-E9-A1R2-01 6 69758154 69758154 G T BAI3 Missense_Mutation p.V729F 0.37 tolerated(0.42) probably_damaging(0.99) TCGA-E9-A1R2-01 6 69758159 69758159 C T BAI3 Silent p.D730D 0.42 TCGA-E9-A1R2-01 7 12391277 12391277 T C VWDE Missense_Mutation p.S1270G 0.35 tolerated(0.17) benign(0.079) TCGA-E9-A1R2-01 8 131226804 131226804 G C ASAP1 Missense_Mutation p.L135V 0.19 deleterious(0.04) possibly_damaging(0.899) TCGA-E9-A1R2-01 8 37729525 37729525 C T RAB11FIP1 Missense_Mutation p.G932D 0.04 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R2-01 8 73849341 73849341 A G KCNB2 Missense_Mutation p.E584G 0.11 tolerated_low_confidence(0.35) benign(0.002) TCGA-E9-A1R2-01 8 73982160 73982160 C T SBSPON Nonsense_Mutation p.W186* 0.28 TCGA-E9-A1R2-01 9 120475050 120475050 T C TLR4 Missense_Mutation p.M215T 0.38 deleterious(0) benign(0.006) TCGA-E9-A1R2-01 9 120475844 120475844 G T TLR4 Missense_Mutation p.G480C 0.38 deleterious(0) probably_damaging(1) TCGA-E9-A1R2-01 9 130913971 130913971 C G LCN2 Silent p.G110G 0.23 TCGA-E9-A1R2-01 9 131772130 131772130 G T SH3GLB2 Silent p.L253L 0.31 TCGA-E9-A1R2-01 9 43625257 43625257 C T SPATA31A6 Missense_Mutation p.V1144I 0.42 tolerated(0.49) benign(0.001) TCGA-E9-A1R2-01 9 6605176 6605176 C G GLDC Missense_Mutation p.K272N 0.46 tolerated(0.46) benign(0.015) TCGA-E9-A1R2-01 X 1584682 1584688 AGCACGA - P2RY8 Frame_Shift_Del p.F255Sfs*6 0.35 TCGA-E9-A1R2-01 X 3239601 3239601 T C MXRA5 Silent p.P1375P 0.18 TCGA-E9-A1R2-01 X 34961414 34961414 G T FAM47B Nonsense_Mutation p.E156* 0.34 TCGA-E9-A1R2-01 X 48434030 48434030 T A RBM3 Missense_Mutation p.V62D 0.38 tolerated(1) benign(0.001) TCGA-E9-A1R3-01 11 132527109 132527109 C A OPCML Silent p.L91L 0.14 TCGA-E9-A1R3-01 12 72149064 72149064 T C RAB21 Missense_Mutation p.L52P 0.25 deleterious(0) probably_damaging(0.976) TCGA-E9-A1R3-01 14 70924319 70924319 C A ADAM21 Missense_Mutation p.Q35K 0.12 deleterious(0.01) benign(0.115) TCGA-E9-A1R3-01 16 109808 109808 C T RHBDF1 Missense_Mutation p.S580N 0.32 tolerated(0.7) benign(0.001) TCGA-E9-A1R3-01 16 24560353 24560353 A G RBBP6 Intron 0.10 TCGA-E9-A1R3-01 17 57652830 57652830 C T DHX40 Missense_Mutation p.T324I 0.21 deleterious(0) possibly_damaging(0.892) TCGA-E9-A1R3-01 19 11409546 11409546 A C TSPAN16 Splice_Site p.X90_splice 0.36 TCGA-E9-A1R3-01 19 9068688 9068688 G A MUC16 Missense_Mutation p.S6253L 0.13 unknown(0) TCGA-E9-A1R3-01 1 226252059 226252059 C G H3F3A Missense_Mutation p.R3G 0.12 tolerated_low_confidence(0.06) benign(0) TCGA-E9-A1R3-01 1 89477458 89477458 A T GBP3 Missense_Mutation p.V374E 0.50 tolerated(0.89) benign(0.005) TCGA-E9-A1R3-01 20 52192684 52192684 G A ZNF217 Silent p.L873L 0.28 TCGA-E9-A1R3-01 2 107029550 107029550 C T RGPD3 Silent p.A1752A 0.26 TCGA-E9-A1R3-01 2 128364902 128364902 G A MYO7B Missense_Mutation p.R849H 0.15 deleterious(0) probably_damaging(1) TCGA-E9-A1R3-01 2 198267481 198267481 T C SF3B1 Missense_Mutation p.N626D 0.25 deleterious(0) probably_damaging(0.979) TCGA-E9-A1R3-01 2 207406859 207406859 G A ADAM23 Splice_Site p.X219_splice 0.32 TCGA-E9-A1R3-01 2 238728887 238728887 A C RBM44 Missense_Mutation p.R603S 0.17 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R3-01 2 46844421 46844421 G A CRIPT 5'UTR 0.39 TCGA-E9-A1R3-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-E9-A1R3-01 3 58178422 58178422 G A DNASE1L3 Missense_Mutation p.R304C 0.25 deleterious_low_confidence(0) benign(0.226) TCGA-E9-A1R3-01 5 33457372 33457372 C T TARS Missense_Mutation p.T316M 0.27 deleterious(0) probably_damaging(0.992) TCGA-E9-A1R3-01 6 24709014 24709017 CTGT - C6orf62 Frame_Shift_Del p.R184Sfs*35 0.43 TCGA-E9-A1R3-01 7 19184779 19184780 - A FERD3L Frame_Shift_Ins p.D70Gfs*53 0.36 TCGA-E9-A1R3-01 9 111655314 111655314 C G IKBKAP Missense_Mutation p.L970F 0.13 deleterious(0) probably_damaging(0.982) TCGA-E9-A1R3-01 9 139905720 139905720 G A ABCA2 Silent p.L1947L 0.14 TCGA-E9-A1R3-01 X 22291518 22291518 G A ZNF645 Missense_Mutation p.R137H 0.13 tolerated(0.08) benign(0.004) TCGA-E9-A1R3-01 X 68382137 68382137 G C PJA1 Silent p.G315G 0.38 TCGA-E9-A1R3-01 X 71681922 71681922 G A HDAC8 Nonsense_Mutation p.R313* 0.35 TCGA-E9-A1R4-01 10 103348238 103348238 C T DPCD Intron 0.20 TCGA-E9-A1R4-01 10 13263973 13263973 G A UCMA 3'UTR 0.12 TCGA-E9-A1R4-01 10 25226277 25226277 C A PRTFDC1 Missense_Mutation p.D59Y 0.19 tolerated(0.09) possibly_damaging(0.603) TCGA-E9-A1R4-01 10 25288347 25288348 TC A ENKUR Frame_Shift_Del p.E69* 0.21 TCGA-E9-A1R4-01 10 28971349 28971350 AC - BAMBI 3'UTR 0.35 TCGA-E9-A1R4-01 10 50944413 50944413 C T OGDHL Missense_Mutation p.R915H 0.26 deleterious(0) probably_damaging(0.998) TCGA-E9-A1R4-01 10 70360776 70360776 G T TET1 Missense_Mutation p.K651N 0.13 deleterious(0) probably_damaging(0.996) TCGA-E9-A1R4-01 11 113569711 113569711 C T TMPRSS5 Missense_Mutation p.G82R 0.17 tolerated(0.06) benign(0.064) TCGA-E9-A1R4-01 11 118272373 118272373 C T RP11-770J1.5 Missense_Mutation p.E4K 0.18 benign(0) TCGA-E9-A1R4-01 11 118780754 118780754 C G BCL9L 5'UTR 0.21 TCGA-E9-A1R4-01 11 125301095 125301095 C G PKNOX2 Missense_Mutation p.S409C 0.45 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-E9-A1R4-01 11 130275729 130275729 G A ADAMTS8 Silent p.F798F 0.11 TCGA-E9-A1R4-01 11 134188577 134188577 G A GLB1L3 Nonsense_Mutation p.W611* 0.14 TCGA-E9-A1R4-01 11 36654963 36654963 C A C11orf74 Missense_Mutation p.T89N 0.17 tolerated(0.16) benign(0.052) TCGA-E9-A1R4-01 11 418925 418925 C T ANO9 Missense_Mutation p.D667N 0.17 tolerated(0.56) benign(0.006) TCGA-E9-A1R4-01 11 4608668 4608668 G A OR52I2 Missense_Mutation p.C209Y 0.14 deleterious(0) probably_damaging(1) TCGA-E9-A1R4-01 11 48328481 48328481 C G OR4S1 Missense_Mutation p.S236C 0.15 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R4-01 11 57102681 57102681 G A SSRP1 5'UTR 0.15 TCGA-E9-A1R4-01 11 6048061 6048061 G A OR56A1 Missense_Mutation p.P292S 0.08 deleterious(0.04) possibly_damaging(0.857) TCGA-E9-A1R4-01 11 65303579 65303579 C T SCYL1 Silent p.L514L 0.07 TCGA-E9-A1R4-01 11 73687867 73687867 C G UCP2 Splice_Site p.X178_splice 0.10 TCGA-E9-A1R4-01 11 7982204 7982204 C A NLRP10 Nonsense_Mutation p.E319* 0.08 TCGA-E9-A1R4-01 12 110341868 110341868 G C TCHP Silent p.L105L 0.21 TCGA-E9-A1R4-01 12 122361793 122361793 C T WDR66 Missense_Mutation p.S215F 0.23 deleterious(0) benign(0.01) TCGA-E9-A1R4-01 12 122361884 122361884 G CA WDR66 Frame_Shift_Ins p.V246Sfs*64 0.17 TCGA-E9-A1R4-01 12 123068876 123068876 G C KNTC1 Silent p.L1105L 0.37 TCGA-E9-A1R4-01 12 64815079 64815079 T A XPOT Missense_Mutation p.I303K 0.15 deleterious(0) possibly_damaging(0.522) TCGA-E9-A1R4-01 12 64815164 64815164 G A XPOT Silent p.L331L 0.13 TCGA-E9-A1R4-01 12 65122796 65122796 G A GNS Silent p.D380D 0.16 TCGA-E9-A1R4-01 13 41791169 41791169 C T MTRF1 3'UTR 0.08 TCGA-E9-A1R4-01 13 77663147 77663147 C G MYCBP2 Missense_Mutation p.L3477F 0.16 probably_damaging(0.99) TCGA-E9-A1R4-01 14 20296093 20296093 C T OR4N2 Silent p.L162L 0.05 TCGA-E9-A1R4-01 14 31188583 31188583 G C SCFD1 Missense_Mutation p.S579T 0.12 tolerated(0.45) benign(0.114) TCGA-E9-A1R4-01 15 75897511 75897511 C T SNUPN Missense_Mutation p.E220K 0.14 tolerated(0.07) benign(0.009) TCGA-E9-A1R4-01 15 91525075 91525075 A G PRC1 Missense_Mutation p.L135P 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R4-01 15 91550259 91550259 C G VPS33B Missense_Mutation p.W207C 0.21 deleterious(0) probably_damaging(0.943) TCGA-E9-A1R4-01 16 1392617 1392617 C G BAIAP3 Silent p.L384L 0.17 TCGA-E9-A1R4-01 16 1394048 1394048 C A BAIAP3 Missense_Mutation p.S506Y 0.15 tolerated(0.07) possibly_damaging(0.594) TCGA-E9-A1R4-01 16 1719082 1719082 C T CRAMP1L Nonsense_Mutation p.Q1139* 0.23 TCGA-E9-A1R4-01 16 19474651 19474651 C T TMC5 Missense_Mutation p.L400F 0.08 tolerated(0.33) benign(0.009) TCGA-E9-A1R4-01 16 21726421 21726421 C G OTOA Missense_Mutation p.S479C 0.11 deleterious(0) probably_damaging(0.93) TCGA-E9-A1R4-01 16 23415115 23415115 C T COG7 Missense_Mutation p.R568Q 0.34 tolerated(0.08) benign(0.045) TCGA-E9-A1R4-01 16 46764513 46764513 G A MYLK3 Silent p.V520V 0.06 TCGA-E9-A1R4-01 16 48201266 48201266 A T ABCC11 Missense_Mutation p.F1356L 0.06 tolerated(0.12) benign(0.255) TCGA-E9-A1R4-01 16 57113490 57113490 C A NLRC5 Missense_Mutation p.A1757D 0.08 deleterious(0) possibly_damaging(0.531) TCGA-E9-A1R4-01 17 27493080 27493080 C T MYO18A Silent p.V293V 0.58 TCGA-E9-A1R4-01 17 3430193 3430193 G A TRPV3 Missense_Mutation p.S511L 0.18 deleterious(0.02) benign(0.303) TCGA-E9-A1R4-01 17 40722064 40722064 G C MLX Missense_Mutation p.D235H 0.22 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R4-01 17 43907553 43907553 G A CRHR1 Missense_Mutation p.M205I 0.11 tolerated(1) benign(0.005) TCGA-E9-A1R4-01 17 62500433 62500433 C T DDX5 Missense_Mutation p.E72K 0.07 deleterious(0) benign(0.175) TCGA-E9-A1R4-01 17 663234 663234 G C GLOD4 3'UTR 0.33 TCGA-E9-A1R4-01 17 663257 663257 G C GLOD4 3'UTR 0.24 TCGA-E9-A1R4-01 18 29171794 29171794 G A TTR 5'UTR 0.28 TCGA-E9-A1R4-01 18 3187502 3187502 C T MYOM1 Missense_Mutation p.G302D 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A1R4-01 18 55027376 55027376 T C ST8SIA3 Silent p.H337H 0.18 TCGA-E9-A1R4-01 19 18685883 18685883 C T UBA52 Missense_Mutation p.H104Y 0.16 deleterious(0.04) possibly_damaging(0.631) TCGA-E9-A1R4-01 19 19379481 19379481 G T TM6SF2 Silent p.V189V 0.14 TCGA-E9-A1R4-01 19 21606749 21606749 G A ZNF493 Missense_Mutation p.E430K 0.23 deleterious(0.05) probably_damaging(0.996) TCGA-E9-A1R4-01 19 31767666 31767666 G A TSHZ3 Silent p.T1011T 0.37 TCGA-E9-A1R4-01 19 51301447 51301447 C G C19orf48 Missense_Mutation p.E87Q 0.22 tolerated_low_confidence(0.6) possibly_damaging(0.607) TCGA-E9-A1R4-01 19 54760128 54760128 C T LILRB5 Missense_Mutation p.D145N 0.15 tolerated(0.07) benign(0.415) TCGA-E9-A1R4-01 19 8587599 8587599 C G MYO1F Missense_Mutation p.G990A 0.33 tolerated(0.42) benign(0.016) TCGA-E9-A1R4-01 1 109952625 109952625 C G PSMA5 Missense_Mutation p.L191F 0.19 tolerated(0.06) benign(0.348) TCGA-E9-A1R4-01 1 198668702 198668702 C T PTPRC Missense_Mutation p.S103L 0.11 tolerated(0.73) benign(0.003) TCGA-E9-A1R4-01 1 202736181 202736181 T C KDM5B Missense_Mutation p.Q195R 0.24 deleterious(0.04) possibly_damaging(0.492) TCGA-E9-A1R4-01 1 227259959 227259959 G C CDC42BPA Nonsense_Mutation p.S926* 0.15 TCGA-E9-A1R4-01 1 23648158 23648158 T C HNRNPR Splice_Site p.X226_splice 0.13 TCGA-E9-A1R4-01 1 243828108 243828108 C T AKT3 Missense_Mutation p.E84K 0.15 deleterious(0.01) benign(0.042) TCGA-E9-A1R4-01 1 25627521 25627521 C G RHD Missense_Mutation p.L191V 0.33 tolerated(0.32) possibly_damaging(0.649) TCGA-E9-A1R4-01 20 13756826 13756826 G A ESF1 Missense_Mutation p.S243L 0.10 tolerated_low_confidence(0.13) probably_damaging(0.991) TCGA-E9-A1R4-01 20 55209300 55209300 A C TFAP2C Missense_Mutation p.T300P 0.40 deleterious(0) probably_damaging(0.998) TCGA-E9-A1R4-01 20 61473313 61473313 C T TCFL5 3'UTR 0.11 TCGA-E9-A1R4-01 20 61473397 61473397 C G TCFL5 Missense_Mutation p.R478T 0.10 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-E9-A1R4-01 21 41719621 41719621 C G DSCAM Missense_Mutation p.D396H 0.40 tolerated(0.08) probably_damaging(0.997) TCGA-E9-A1R4-01 21 47931393 47931393 A G DIP2A Missense_Mutation p.E323G 0.42 deleterious(0.03) probably_damaging(0.986) TCGA-E9-A1R4-01 22 19794230 19794230 C G GNB1L Silent p.P156P 0.25 TCGA-E9-A1R4-01 22 36897374 36897374 C T FOXRED2 Missense_Mutation p.R377Q 0.11 tolerated(0.38) benign(0.042) TCGA-E9-A1R4-01 2 107084704 107084704 G A RGPD3 Missense_Mutation p.S14L 0.18 deleterious(0) possibly_damaging(0.906) TCGA-E9-A1R4-01 2 116520181 116520181 C G DPP10 Missense_Mutation p.Q374E 0.12 deleterious(0.02) benign(0.016) TCGA-E9-A1R4-01 2 179458942 179458942 C T TTN Missense_Mutation p.R19393K 0.12 TCGA-E9-A1R4-01 2 179462304 179462304 C T TTN Missense_Mutation p.A19169T 0.11 TCGA-E9-A1R4-01 2 179466175 179466175 C G TTN Missense_Mutation p.E18517Q 0.17 TCGA-E9-A1R4-01 2 200826646 200826646 C T C2orf47 Silent p.S264S 0.28 TCGA-E9-A1R4-01 2 206656994 206656994 G A NRP2 Missense_Mutation p.E826K 0.13 tolerated(0.64) benign(0.01) TCGA-E9-A1R4-01 2 207482334 207482334 C A ADAM23 Missense_Mutation p.Q828K 0.32 deleterious(0.03) benign(0.037) TCGA-E9-A1R4-01 2 207630004 207630004 G A MDH1B 5'UTR 0.09 TCGA-E9-A1R4-01 2 220164932 220164932 C T PTPRN Missense_Mutation p.R404H 0.25 deleterious(0.03) benign(0.223) TCGA-E9-A1R4-01 2 233349542 233349542 G A ECEL1 Missense_Mutation p.T343M 0.25 deleterious(0) probably_damaging(0.963) TCGA-E9-A1R4-01 2 238672937 238672937 C T LRRFIP1 3'UTR 0.17 TCGA-E9-A1R4-01 2 243037150 243037153 AATA - AC093642.5 RNA 0.11 TCGA-E9-A1R4-01 2 50149372 50149372 C T NRXN1 Missense_Mutation p.G1452S 0.18 tolerated_low_confidence(0.18) benign(0.004) TCGA-E9-A1R4-01 2 74725249 74725249 C T LBX2 Silent p.Q130Q 0.28 TCGA-E9-A1R4-01 3 11059539 11059539 G A SLC6A1 Silent p.L83L 0.12 TCGA-E9-A1R4-01 3 126228489 126228489 G T UROC1 Missense_Mutation p.T97K 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-E9-A1R4-01 3 129284233 129284233 C A PLXND1 Nonsense_Mutation p.E1491* 0.10 TCGA-E9-A1R4-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.39 deleterious(0.02) probably_damaging(0.959) TCGA-E9-A1R4-01 3 38739417 38739417 G C SCN10A Missense_Mutation p.S1765W 0.17 deleterious(0) probably_damaging(1) TCGA-E9-A1R4-01 3 38755528 38755528 T A SCN10A Missense_Mutation p.E1242V 0.40 deleterious(0) benign(0.219) TCGA-E9-A1R4-01 3 49163484 49163484 G T LAMB2 Missense_Mutation p.L754M 0.19 tolerated(0.46) benign(0.221) TCGA-E9-A1R4-01 3 50284386 50284386 G A GNAI2 Intron 0.23 TCGA-E9-A1R4-01 3 51101917 51101917 G T DOCK3 Silent p.V118V 0.13 TCGA-E9-A1R4-01 3 85851225 85851225 G A CADM2 Silent p.Q32Q 0.08 TCGA-E9-A1R4-01 4 109670466 109670466 C T ETNPPL Silent p.P285P 0.20 TCGA-E9-A1R4-01 4 110661989 110661989 A G CFI 3'UTR 0.20 TCGA-E9-A1R4-01 4 113352964 113352964 A G ALPK1 Missense_Mutation p.N754S 0.15 tolerated(0.79) benign(0.001) TCGA-E9-A1R4-01 4 155254228 155254228 G A DCHS2 Silent p.G545G 0.29 TCGA-E9-A1R4-01 4 177650829 177650829 G T VEGFC Silent p.L73L 0.18 TCGA-E9-A1R4-01 4 38800441 38800441 G C TLR1 Missense_Mutation p.I4M 0.18 tolerated(0.08) benign(0.246) TCGA-E9-A1R4-01 4 672772 672772 G C MYL5 Missense_Mutation p.R46P 0.12 deleterious(0) possibly_damaging(0.767) TCGA-E9-A1R4-01 4 88987028 88987028 G C PKD2 Missense_Mutation p.E785D 0.15 deleterious(0.03) possibly_damaging(0.601) TCGA-E9-A1R4-01 5 125820125 125820125 G C GRAMD3 Silent p.L308L 0.07 TCGA-E9-A1R4-01 5 131676322 131676322 C A SLC22A4 Silent p.L503L 0.13 TCGA-E9-A1R4-01 5 178562924 178562924 G A ADAMTS2 Missense_Mutation p.R691C 0.21 deleterious(0) probably_damaging(0.978) TCGA-E9-A1R4-01 5 180666577 180666577 C T GNB2L1 Silent p.E145E 0.20 TCGA-E9-A1R4-01 5 38504178 38504178 G C LIFR Nonsense_Mutation p.S446* 0.14 TCGA-E9-A1R4-01 5 68400344 68400344 G C SLC30A5 Intron 0.11 TCGA-E9-A1R4-01 5 71499538 71499538 G A MAP1B Silent p.V2387V 0.12 TCGA-E9-A1R4-01 6 143828431 143828431 C T FUCA2 Missense_Mutation p.D119N 0.20 tolerated(0.11) benign(0.117) TCGA-E9-A1R4-01 6 27369106 27369106 C A ZNF391 Silent p.S319S 0.18 TCGA-E9-A1R4-01 6 30043546 30043546 C T RNF39 Silent p.T7T 0.16 TCGA-E9-A1R4-01 6 33284511 33284511 G A ZBTB22 Silent p.I61I 0.12 TCGA-E9-A1R4-01 6 36343650 36343650 G C ETV7 Nonsense_Mutation p.S102* 0.12 TCGA-E9-A1R4-01 6 42797254 42797254 C A GLTSCR1L Missense_Mutation p.H395N 0.11 tolerated(0.54) possibly_damaging(0.571) TCGA-E9-A1R4-01 6 43024077 43024077 C G MRPL2 Missense_Mutation p.E124D 0.10 deleterious(0.04) probably_damaging(0.966) TCGA-E9-A1R4-01 6 5002461 5002461 C G RPP40 Missense_Mutation p.E48Q 0.14 deleterious(0.02) probably_damaging(0.926) TCGA-E9-A1R4-01 6 8430324 8430324 C T SLC35B3 Missense_Mutation p.E24K 0.09 tolerated_low_confidence(0.83) benign(0) TCGA-E9-A1R4-01 7 123097473 123097473 C A IQUB Nonsense_Mutation p.E719* 0.37 TCGA-E9-A1R4-01 7 127231312 127231312 G A ARF5 Missense_Mutation p.D168N 0.17 deleterious_low_confidence(0) benign(0.07) TCGA-E9-A1R4-01 7 5521385 5521385 G A FBXL18 3'UTR 0.26 TCGA-E9-A1R4-01 8 108348421 108348421 G C ANGPT1 Missense_Mutation p.L178V 0.07 deleterious(0.01) benign(0.098) TCGA-E9-A1R4-01 8 133023110 133023110 G C EFR3A Missense_Mutation p.E812Q 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-E9-A1R4-01 8 145729709 145729709 C T GPT Missense_Mutation p.R8W 0.13 deleterious(0.01) benign(0.28) TCGA-E9-A1R4-01 8 23299120 23299120 C T ENTPD4 Missense_Mutation p.E282K 0.24 deleterious(0) probably_damaging(0.946) TCGA-E9-A1R4-01 8 68931874 68931874 C G PREX2 Missense_Mutation p.Q102E 0.06 tolerated(0.36) benign(0.037) TCGA-E9-A1R4-01 8 70498615 70498615 G A SULF1 Missense_Mutation p.E146K 0.20 tolerated(0.08) possibly_damaging(0.836) TCGA-E9-A1R4-01 9 102595783 102595783 A G NR4A3 Intron 0.22 TCGA-E9-A1R4-01 9 113173528 113173528 C A SVEP1 Missense_Mutation p.G2155C 0.25 probably_damaging(1) TCGA-E9-A1R4-01 9 114860833 114860833 G A SUSD1 Missense_Mutation p.T464M 0.08 deleterious(0.02) possibly_damaging(0.66) TCGA-E9-A1R4-01 9 115932000 115932000 G A FKBP15 Nonsense_Mutation p.Q997* 0.10 TCGA-E9-A1R4-01 9 128074889 128074889 G A GAPVD1 Missense_Mutation p.E534K 0.10 tolerated(1) probably_damaging(0.996) TCGA-E9-A1R4-01 9 21854789 21854789 C T MTAP Missense_Mutation p.L204F 0.12 deleterious(0) possibly_damaging(0.669) TCGA-E9-A1R4-01 9 23692607 23692607 C T ELAVL2 Missense_Mutation p.G343E 0.15 tolerated(0.05) probably_damaging(0.965) TCGA-E9-A1R4-01 9 77417066 77417066 G C TRPM6 Nonsense_Mutation p.S586* 0.15 TCGA-E9-A1R4-01 X 108652304 108652304 C T GUCY2F Missense_Mutation p.G629R 0.17 tolerated(0.15) benign(0.001) TCGA-E9-A1R4-01 X 109694516 109694516 C T RGAG1 Missense_Mutation p.P224L 0.30 deleterious(0.04) possibly_damaging(0.804) TCGA-E9-A1R4-01 X 117819732 117819732 G A DOCK11 Missense_Mutation p.D2062N 0.11 tolerated(0.54) benign(0.012) TCGA-E9-A1R4-01 X 138880454 138880454 G A ATP11C Nonsense_Mutation p.Q282* 0.19 TCGA-E9-A1R4-01 X 24082437 24082437 G A EIF2S3 Missense_Mutation p.E253K 0.45 tolerated(0.21) benign(0.001) TCGA-E9-A1R4-01 X 26211933 26211933 C T MAGEB6 5'UTR 0.24 TCGA-E9-A1R4-01 X 50089714 50089714 G A CCNB3 Missense_Mutation p.E1240K 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R4-01 X 53436124 53436124 C A SMC1A Nonsense_Mutation p.E472* 0.12 TCGA-E9-A1R4-01 X 63565058 63565058 C A MTMR8 Splice_Site p.X245_splice 0.05 TCGA-E9-A1R4-01 X 65242503 65242503 G A VSIG4 Intron 0.17 TCGA-E9-A1R4-01 X 66863184 66863184 C T AR Missense_Mutation p.S568F 0.20 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R4-01 X 69385965 69385965 C T IGBP1 3'UTR 0.16 TCGA-E9-A1R4-01 X 78010427 78010427 A T LPAR4 Missense_Mutation p.R21W 0.32 deleterious(0.03) benign(0.007) TCGA-E9-A1R4-01 X 78619023 78619023 T A ITM2A Missense_Mutation p.E47V 0.22 deleterious(0.03) benign(0.173) TCGA-E9-A1R5-01 11 108361856 108361856 G T KDELC2 Missense_Mutation p.P81T 0.31 tolerated(0.14) benign(0.122) TCGA-E9-A1R5-01 11 49974275 49974275 G A OR4C13 Missense_Mutation p.G101R 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.822) TCGA-E9-A1R5-01 11 89450746 89450746 G T TRIM77 Missense_Mutation p.W353C 0.17 deleterious(0.03) benign(0.258) TCGA-E9-A1R5-01 12 130919357 130919357 G A RIMBP2 Silent p.D708D 0.18 TCGA-E9-A1R5-01 12 56607765 56607765 C A RNF41 Nonsense_Mutation p.G23* 0.32 TCGA-E9-A1R5-01 12 8086481 8086481 T G SLC2A3 Silent p.I11I 0.26 TCGA-E9-A1R5-01 14 53244926 53244926 A C GNPNAT1 3'UTR 0.27 TCGA-E9-A1R5-01 14 74758989 74758989 C T ABCD4 Splice_Site p.X373_splice 0.23 TCGA-E9-A1R5-01 14 88454828 88454828 G C GALC Missense_Mutation p.R79G 0.28 deleterious(0) possibly_damaging(0.807) TCGA-E9-A1R5-01 15 23812334 23812334 C T MKRN3 Missense_Mutation p.R469W 0.30 tolerated(0.22) benign(0.005) TCGA-E9-A1R5-01 15 75190052 75190052 G A MPI Missense_Mutation p.R418H 0.38 deleterious(0) probably_damaging(0.991) TCGA-E9-A1R5-01 16 1497552 1497552 G T CLCN7 Silent p.S697S 0.31 TCGA-E9-A1R5-01 17 10432037 10432037 A G MYH2 Silent p.A1238A 0.19 TCGA-E9-A1R5-01 17 16638041 16638041 A T CCDC144A Missense_Mutation p.H819L 0.23 deleterious(0.02) benign(0.255) TCGA-E9-A1R5-01 17 37880261 37880261 G T ERBB2 Missense_Mutation p.D769Y 0.50 deleterious(0) probably_damaging(1) TCGA-E9-A1R5-01 17 39565982 39565982 T C AC003958.2 RNA 0.24 TCGA-E9-A1R5-01 17 40460197 40460197 G A STAT5A Silent p.P636P 0.09 TCGA-E9-A1R5-01 17 60088032 60088032 T A MED13 Nonsense_Mutation p.K616* 0.22 TCGA-E9-A1R5-01 17 66424974 66424974 G - WIPI1 Frame_Shift_Del p.H357Tfs*29 0.31 TCGA-E9-A1R5-01 19 1105676 1105676 A G GPX4 Missense_Mutation p.E115G 0.31 deleterious(0) probably_damaging(0.928) TCGA-E9-A1R5-01 19 1105679 1105679 T G GPX4 Missense_Mutation p.I116S 0.29 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R5-01 19 11979122 11979122 A T ZNF439 Missense_Mutation p.K413M 0.33 deleterious(0) probably_damaging(0.983) TCGA-E9-A1R5-01 19 3907867 3907867 G A ATCAY Missense_Mutation p.R165H 0.37 deleterious(0.05) probably_damaging(1) TCGA-E9-A1R5-01 19 57325512 57325512 A G PEG3 Missense_Mutation p.I1433T 0.16 tolerated(0.5) benign(0) TCGA-E9-A1R5-01 19 8381508 8381508 G A NDUFA7 Silent p.L41L 0.15 TCGA-E9-A1R5-01 1 150969810 150969810 C T FAM63A Missense_Mutation p.E503K 0.82 deleterious(0.04) possibly_damaging(0.641) TCGA-E9-A1R5-01 1 182355487 182355487 G A GLUL Nonsense_Mutation p.Q127* 0.16 TCGA-E9-A1R5-01 1 197890707 197890707 C T LHX9 Silent p.N217N 0.17 TCGA-E9-A1R5-01 1 207139176 207139177 - T FCAMR Frame_Shift_Ins p.R66Kfs*103 0.17 TCGA-E9-A1R5-01 1 225702347 225702347 G A ENAH Missense_Mutation p.T390I 0.50 deleterious(0) probably_damaging(0.968) TCGA-E9-A1R5-01 1 247014108 247014108 C T AHCTF1 Missense_Mutation p.V1743M 0.06 tolerated(0.54) benign(0.012) TCGA-E9-A1R5-01 20 35627233 35627233 C A RBL1 Missense_Mutation p.V1046F 0.24 tolerated(0.09) benign(0.191) TCGA-E9-A1R5-01 20 54974292 54974292 C T CSTF1 Silent p.D305D 0.22 TCGA-E9-A1R5-01 21 36171700 36171715 CCAGGTATTGGTAGGA - RUNX1 Frame_Shift_Del p.S284Dfs*22 0.38 TCGA-E9-A1R5-01 22 39418878 39418878 C T APOBEC3D Silent p.N23N 0.35 TCGA-E9-A1R5-01 2 152139453 152139453 C G NMI Missense_Mutation p.D4H 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-E9-A1R5-01 3 126736504 126736504 C T PLXNA1 Silent p.L1171L 0.35 TCGA-E9-A1R5-01 3 132213003 132213004 - CTT DNAJC13 In_Frame_Ins p.D1281delinsAY 0.34 TCGA-E9-A1R5-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.50 tolerated(0.21) possibly_damaging(0.893) TCGA-E9-A1R5-01 3 49689363 49689363 C T BSN Missense_Mutation p.R792C 0.35 unknown(0) TCGA-E9-A1R5-01 3 97868610 97868610 C A OR5H14 Nonsense_Mutation p.C127* 0.32 TCGA-E9-A1R5-01 5 114482989 114482989 C T TRIM36 Missense_Mutation p.R134Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-E9-A1R5-01 5 157158639 157158639 G C THG1L Missense_Mutation p.R64P 0.11 deleterious(0) probably_damaging(0.954) TCGA-E9-A1R5-01 7 94041434 94041434 G A COL1A2 Splice_Site p.X468_splice 0.13 TCGA-E9-A1R5-01 7 97614196 97614196 T C OCM2 3'UTR 0.39 TCGA-E9-A1R5-01 8 106815386 106815386 G A ZFPM2 Missense_Mutation p.A1026T 0.29 tolerated(0.4) benign(0.013) TCGA-E9-A1R5-01 8 145662322 145662322 A G TONSL Intron 0.17 TCGA-E9-A1R5-01 8 48647918 48647918 G C SPIDR Missense_Mutation p.C885S 0.56 deleterious(0.01) possibly_damaging(0.848) TCGA-E9-A1R5-01 8 75761435 75761435 G C PI15 Missense_Mutation p.D242H 0.48 deleterious(0) possibly_damaging(0.473) TCGA-E9-A1R5-01 8 88885491 88885491 G A DCAF4L2 Missense_Mutation p.P237S 0.04 deleterious(0.01) probably_damaging(0.964) TCGA-E9-A1R5-01 9 131371190 131371190 A C SPTAN1 Missense_Mutation p.Q1510P 0.13 deleterious(0.01) unknown(0) TCGA-E9-A1R5-01 9 35095358 35095364 GCGAAAA - PIGO Frame_Shift_Del p.F67Gfs*6 0.50 TCGA-E9-A1R5-01 9 36594707 36594707 A G MELK Missense_Mutation p.Q115R 0.34 deleterious(0) probably_damaging(1) TCGA-E9-A1R5-01 9 99064321 99064321 C T HSD17B3 Silent p.A22A 0.34 TCGA-E9-A1R5-01 X 31792301 31792301 G A DMD Nonsense_Mutation p.Q2440* 0.12 TCGA-E9-A1R5-01 X 50125564 50125564 C T DGKK RNA 0.04 TCGA-E9-A1R6-01 11 30033317 30033317 G T KCNA4 Silent p.S303S 0.75 TCGA-E9-A1R6-01 11 64822123 64822123 C T NAALADL1 Missense_Mutation p.E231K 0.10 deleterious(0.01) benign(0.045) TCGA-E9-A1R6-01 11 93463081 93463081 C T KIAA1731 Missense_Mutation p.S2538F 0.19 deleterious(0.01) possibly_damaging(0.704) TCGA-E9-A1R6-01 12 27235248 27235248 C T C12orf71 Missense_Mutation p.V57I 0.12 tolerated(1) benign(0.001) TCGA-E9-A1R6-01 12 32138283 32138283 A G KIAA1551 Missense_Mutation p.K1465R 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-E9-A1R6-01 12 6926405 6926405 G T CD4 Missense_Mutation p.E355D 0.20 tolerated(0.07) benign(0.004) TCGA-E9-A1R6-01 13 51961567 51961567 C A INTS6 Missense_Mutation p.W283C 0.35 tolerated(0.05) probably_damaging(0.998) TCGA-E9-A1R6-01 14 24028968 24028968 G A AP1G2 Missense_Mutation p.S783L 0.20 tolerated(0.35) benign(0.038) TCGA-E9-A1R6-01 15 33944994 33944994 C T RYR3 Silent p.N1406N 0.25 TCGA-E9-A1R6-01 17 63052695 63052695 G A GNA13 Missense_Mutation p.P6L 0.24 tolerated_low_confidence(0.13) possibly_damaging(0.492) TCGA-E9-A1R6-01 17 9674897 9674897 C A DHRS7C Missense_Mutation p.A283S 0.39 deleterious(0) probably_damaging(1) TCGA-E9-A1R6-01 19 11942981 11942981 C T ZNF440 Silent p.H330H 0.17 TCGA-E9-A1R6-01 19 5212145 5212145 T C PTPRS Missense_Mutation p.N1629S 0.09 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R6-01 1 100960455 100960455 C T CDC14A Nonsense_Mutation p.Q407* 0.43 TCGA-E9-A1R6-01 1 24932292 24932292 G T NCMAP 3'UTR 0.40 TCGA-E9-A1R6-01 1 33988982 33988982 C G CSMD2 Missense_Mutation p.Q3334H 0.06 tolerated(0.09) benign(0.046) TCGA-E9-A1R6-01 1 84385515 84385515 C T TTLL7 Missense_Mutation p.R456Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-E9-A1R6-01 1 90179621 90179621 G A LRRC8C Missense_Mutation p.V498I 0.17 tolerated(0.34) benign(0.328) TCGA-E9-A1R6-01 2 153417524 153417524 C T FMNL2 Missense_Mutation p.R191C 0.33 probably_damaging(0.975) TCGA-E9-A1R6-01 2 232576068 232576070 AGA - PTMA In_Frame_Del p.K21del 0.33 TCGA-E9-A1R6-01 2 241708612 241708612 C T KIF1A Missense_Mutation p.A479T 0.27 deleterious(0.01) possibly_damaging(0.885) TCGA-E9-A1R6-01 3 190347416 190347416 A T IL1RAP Intron 0.75 TCGA-E9-A1R6-01 4 189068024 189068024 C T TRIML1 Missense_Mutation p.S302L 0.26 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R6-01 4 80327715 80327715 C G GK2 Missense_Mutation p.R547T 0.48 deleterious(0.02) benign(0.15) TCGA-E9-A1R6-01 5 56171058 56171059 - A MAP3K1 Frame_Shift_Ins p.D630Rfs*16 0.47 TCGA-E9-A1R6-01 5 56177011 56177014 ATAG - MAP3K1 Frame_Shift_Del p.R763Cfs*35 0.46 TCGA-E9-A1R6-01 6 127767979 127767979 C A KIAA0408 Missense_Mutation p.W495C 0.26 tolerated(0.36) possibly_damaging(0.525) TCGA-E9-A1R6-01 6 131925359 131925359 A T MED23 Missense_Mutation p.V572D 0.71 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R6-01 6 160908314 160908314 C T LPAL2 Intron 0.19 TCGA-E9-A1R6-01 7 127014790 127014790 T C ZNF800 Silent p.T200T 0.25 TCGA-E9-A1R6-01 8 88365983 88365983 G A CNBD1 Silent p.E424E 0.47 TCGA-E9-A1R6-01 X 119496076 119496076 G A ATP1B4 Missense_Mutation p.R18H 0.32 tolerated_low_confidence(0.19) benign(0.005) TCGA-E9-A1R6-01 X 120009206 120009206 C T CT47B1 Missense_Mutation p.D107N 0.24 tolerated(0.71) benign(0.066) TCGA-E9-A1R6-01 X 153694159 153694159 G A PLXNA3 Missense_Mutation p.G834D 0.42 tolerated(0.05) possibly_damaging(0.527) TCGA-E9-A1R6-01 X 48895568 48895568 G A TFE3 Silent p.P284P 0.20 TCGA-E9-A1R6-01 X 49083475 49083475 G A CACNA1F Silent p.A411A 0.33 TCGA-E9-A1R6-01 X 50121599 50121599 G C DGKK RNA 0.19 TCGA-E9-A1R6-01 X 54784950 54784950 G C ITIH6 Missense_Mutation p.H519Q 0.16 tolerated(0.22) benign(0.034) TCGA-E9-A1R6-01 X 79979248 79979248 T C BRWD3 Missense_Mutation p.K550R 0.20 deleterious(0.03) benign(0.046) TCGA-E9-A1R7-01 10 15600179 15600179 G C ITGA8 Missense_Mutation p.T887S 0.19 tolerated(0.45) benign(0.259) TCGA-E9-A1R7-01 10 33469188 33469188 G A NRP1 Missense_Mutation p.A863V 0.30 tolerated(0.5) benign(0.232) TCGA-E9-A1R7-01 10 8115941 8115942 - T GATA3 Frame_Shift_Ins p.G432Wfs*76 0.31 TCGA-E9-A1R7-01 10 96028741 96028741 G C PLCE1 Missense_Mutation p.G1446A 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A1R7-01 11 44219400 44219400 C T EXT2 Missense_Mutation p.P476S 0.52 tolerated(0.12) possibly_damaging(0.698) TCGA-E9-A1R7-01 11 605238 605238 G A PHRF1 Silent p.A424A 0.46 TCGA-E9-A1R7-01 11 6806874 6806874 G A OR2AG1 Missense_Mutation p.M202I 0.29 tolerated(0.08) benign(0.008) TCGA-E9-A1R7-01 12 101490420 101490420 C T ANO4 Silent p.L580L 0.17 TCGA-E9-A1R7-01 14 20876196 20876196 G C TEP1 Missense_Mutation p.H135D 0.36 tolerated_low_confidence(0.1) benign(0.002) TCGA-E9-A1R7-01 14 24836347 24836347 A C NFATC4 Silent p.S29S 0.22 TCGA-E9-A1R7-01 14 39555015 39555015 G A SEC23A Missense_Mutation p.P260L 0.06 deleterious(0) probably_damaging(0.95) TCGA-E9-A1R7-01 15 23811660 23811660 G A MKRN3 Missense_Mutation p.C244Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-E9-A1R7-01 15 44615184 44615184 T A CASC4 Missense_Mutation p.S117T 0.33 tolerated(0.57) probably_damaging(0.999) TCGA-E9-A1R7-01 15 44853385 44853385 A T EIF3J 3'UTR 0.42 TCGA-E9-A1R7-01 15 89388987 89388987 G T ACAN Nonsense_Mutation p.E435* 0.43 TCGA-E9-A1R7-01 16 24135281 24135281 G A PRKCB Silent p.L348L 0.40 TCGA-E9-A1R7-01 16 30515580 30515580 A C ITGAL Silent p.R744R 0.15 TCGA-E9-A1R7-01 16 51175500 51175500 G T SALL1 Silent p.S211S 0.58 TCGA-E9-A1R7-01 17 10298758 10298758 C G MYH8 Missense_Mutation p.A1552P 0.44 deleterious(0) possibly_damaging(0.781) TCGA-E9-A1R7-01 17 37356699 37356699 G A RPL19 Intron 0.73 TCGA-E9-A1R7-01 17 40497585 40497585 C T STAT3 Missense_Mutation p.A122T 0.19 tolerated(0.59) benign(0.008) TCGA-E9-A1R7-01 17 63898300 63898300 T C CEP112 Silent p.Q711Q 0.31 TCGA-E9-A1R7-01 17 78704422 78704422 G T RPTOR Silent p.S190S 0.23 TCGA-E9-A1R7-01 18 60563042 60563042 T G PHLPP1 Missense_Mutation p.F748V 0.34 tolerated(0.28) benign(0.145) TCGA-E9-A1R7-01 19 42738739 42738739 T C AC006486.9 Missense_Mutation p.D166G 0.60 deleterious(0) possibly_damaging(0.653) TCGA-E9-A1R7-01 1 109617632 109617632 C A TAF13 Missense_Mutation p.R28I 0.49 deleterious(0) possibly_damaging(0.896) TCGA-E9-A1R7-01 1 161059016 161059016 G A PVRL4 Missense_Mutation p.S24L 0.49 deleterious(0.03) benign(0.075) TCGA-E9-A1R7-01 1 19439335 19439335 C T UBR4 Silent p.L3828L 0.32 TCGA-E9-A1R7-01 1 203680228 203680228 C T ATP2B4 Missense_Mutation p.R675C 0.13 deleterious(0) probably_damaging(1) TCGA-E9-A1R7-01 1 215768802 215768802 C T KCTD3 Nonsense_Mutation p.Q308* 0.26 TCGA-E9-A1R7-01 1 220953546 220953546 C T MARC2 Silent p.V283V 0.12 TCGA-E9-A1R7-01 1 227921282 227921282 G A JMJD4 Silent p.L265L 0.19 TCGA-E9-A1R7-01 1 247007193 247007193 T G AHCTF1 Missense_Mutation p.L2152F 0.28 deleterious(0.05) benign(0.191) TCGA-E9-A1R7-01 1 65335075 65335075 C T JAK1 Missense_Mutation p.C189Y 0.45 tolerated(0.09) probably_damaging(0.999) TCGA-E9-A1R7-01 20 3682202 3682202 G T SIGLEC1 Missense_Mutation p.P439T 0.30 deleterious(0) probably_damaging(1) TCGA-E9-A1R7-01 2 16082159 16082159 C T MYCN 5'UTR 0.30 TCGA-E9-A1R7-01 2 206869432 206869432 G T INO80D Missense_Mutation p.S915Y 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E9-A1R7-01 2 210841715 210841715 A G UNC80 Missense_Mutation p.I2885V 0.38 possibly_damaging(0.811) TCGA-E9-A1R7-01 2 237240002 237240002 C T IQCA1 Silent p.K791K 0.29 TCGA-E9-A1R7-01 2 73957812 73957812 G C TPRKB Missense_Mutation p.L106V 0.50 tolerated(0.07) benign(0.17) TCGA-E9-A1R7-01 2 98422132 98422132 T C TMEM131 Missense_Mutation p.N697S 0.37 tolerated(1) benign(0.025) TCGA-E9-A1R7-01 3 121137241 121137241 C T STXBP5L Missense_Mutation p.P1119L 0.29 deleterious(0) benign(0.044) TCGA-E9-A1R7-01 3 186953750 186953750 G A MASP1 Missense_Mutation p.R637C 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-E9-A1R7-01 4 142150807 142150807 C A ZNF330 Missense_Mutation p.T125N 0.38 tolerated(0.33) benign(0.148) TCGA-E9-A1R7-01 4 159493959 159493959 C T RXFP1 Silent p.C53C 0.09 TCGA-E9-A1R7-01 4 57797770 57797770 T A REST Missense_Mutation p.S916T 0.19 tolerated(0.13) benign(0.187) TCGA-E9-A1R7-01 5 108714080 108714080 C T PJA2 Missense_Mutation p.E370K 0.28 tolerated(0.25) benign(0.027) TCGA-E9-A1R7-01 5 112384837 112384837 G A MCC Nonsense_Mutation p.R870* 0.32 TCGA-E9-A1R7-01 5 140589861 140589861 G A PCDHB12 Missense_Mutation p.R461H 0.09 tolerated_low_confidence(0.09) benign(0.032) TCGA-E9-A1R7-01 5 167798457 167798457 T A WWC1 Missense_Mutation p.C50S 0.14 deleterious(0) probably_damaging(0.999) TCGA-E9-A1R7-01 5 35874629 35874629 T C IL7R Missense_Mutation p.V262A 0.43 tolerated(0.28) benign(0.019) TCGA-E9-A1R7-01 6 27115041 27115041 G A HIST1H2AH Missense_Mutation p.G45E 0.33 deleterious_low_confidence(0.01) benign(0.234) TCGA-E9-A1R7-01 6 8417217 8417217 C T SLC35B3 Silent p.R295R 0.14 TCGA-E9-A1R7-01 7 92119083 92119083 T C PEX1 Missense_Mutation p.D1194G 0.26 deleterious(0) benign(0.379) TCGA-E9-A1R7-01 8 124792717 124792717 C T FAM91A1 Intron 0.17 TCGA-E9-A1R7-01 8 41467297 41467297 G A AGPAT6 Missense_Mutation p.R120Q 0.50 deleterious(0.01) benign(0.154) TCGA-E9-A1R7-01 8 55540310 55540310 C T RP1 Nonsense_Mutation p.Q1290* 0.15 TCGA-E9-A1R7-01 8 97605791 97605791 C A SDC2 Missense_Mutation p.D48E 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-E9-A1R7-01 9 116224016 116224016 A G RGS3 Missense_Mutation p.N37S 0.53 tolerated_low_confidence(0.57) unknown(0) TCGA-E9-A1R7-01 9 32630240 32630240 C G TAF1L Missense_Mutation p.E1780Q 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.778) TCGA-E9-A1R7-01 9 33797959 33797959 C G PRSS3 Missense_Mutation p.I168M 0.41 deleterious(0.04) possibly_damaging(0.889) TCGA-E9-A1R7-01 9 73152123 73152123 C T TRPM3 Silent p.T1290T 0.81 TCGA-E9-A1R7-01 X 55651085 55651085 C A FOXR2 3'UTR 0.50 TCGA-E9-A1R7-01 X 77130922 77130922 T C MAGT1 Intron 0.31 TCGA-E9-A1RA-01 10 8111543 8111544 - TACTGAA GATA3 Nonsense_Mutation p.Y346* 0.21 TCGA-E9-A1RA-01 11 34173993 34173993 C T ABTB2 Missense_Mutation p.D1007N 0.21 tolerated(0.07) benign(0.031) TCGA-E9-A1RA-01 12 10750728 10750728 G T KLRAP1 RNA 0.08 TCGA-E9-A1RA-01 12 70004328 70004328 C T LRRC10 Silent p.L97L 0.41 TCGA-E9-A1RA-01 13 52725510 52725510 C A NEK3 Missense_Mutation p.Q137H 0.19 tolerated(0.05) benign(0.33) TCGA-E9-A1RA-01 15 34135709 34135709 C T RYR3 Silent p.F4410F 0.07 TCGA-E9-A1RA-01 16 19070770 19070770 G A TMC7 Missense_Mutation p.G687E 0.29 deleterious(0.03) probably_damaging(0.931) TCGA-E9-A1RA-01 16 4933762 4933762 C T PPL Missense_Mutation p.E1632K 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-E9-A1RA-01 17 66511555 66511561 TACCGCC - PRKAR1A Frame_Shift_Del p.S5Rfs*122 0.33 TCGA-E9-A1RA-01 17 7227242 7227242 G A NEURL4 Missense_Mutation p.R718C 0.24 deleterious(0) possibly_damaging(0.871) TCGA-E9-A1RA-01 19 15053236 15053236 G A OR7C2 Silent p.E312E 0.19 TCGA-E9-A1RA-01 19 56565031 56565031 G A NLRP5 Silent p.A1052A 0.27 TCGA-E9-A1RA-01 1 233092096 233092096 A G NTPCR Silent p.L67L 0.17 TCGA-E9-A1RA-01 1 70397248 70397248 G A LRRC7 Missense_Mutation p.E198K 0.16 tolerated(0.06) probably_damaging(0.994) TCGA-E9-A1RA-01 20 16488613 16488613 T C KIF16B Missense_Mutation p.K230R 0.25 tolerated(0.25) possibly_damaging(0.64) TCGA-E9-A1RA-01 22 37900230 37900230 G A CARD10 Missense_Mutation p.R533C 0.21 deleterious(0) probably_damaging(0.939) TCGA-E9-A1RA-01 22 47070636 47070636 C T GRAMD4 Silent p.Y489Y 0.20 TCGA-E9-A1RA-01 2 132288159 132288159 C T CCDC74A Silent p.P101P 0.25 TCGA-E9-A1RA-01 3 123663791 123663791 T C CCDC14 Missense_Mutation p.I423M 0.20 deleterious(0.02) possibly_damaging(0.844) TCGA-E9-A1RA-01 3 156710975 156710975 A G RP11-6F2.3 5'Flank 0.17 TCGA-E9-A1RA-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.23 deleterious(0.04) probably_damaging(0.96) TCGA-E9-A1RA-01 3 52729291 52729291 A C GLT8D1 Silent p.A280A 0.13 TCGA-E9-A1RA-01 4 7435705 7435705 A T PSAPL1 Missense_Mutation p.V301E 0.12 deleterious(0) probably_damaging(0.955) TCGA-E9-A1RA-01 5 178408703 178408703 C T GRM6 Silent p.T863T 0.26 TCGA-E9-A1RA-01 7 71175847 71175847 G T WBSCR17 Silent p.R534R 0.34 TCGA-E9-A1RA-01 8 141749152 141749152 C A PTK2 Missense_Mutation p.R597L 0.28 deleterious(0) possibly_damaging(0.841) TCGA-E9-A1RA-01 X 32613970 32613970 T G DMD Missense_Mutation p.Q502H 0.31 possibly_damaging(0.763) TCGA-E9-A1RB-01 10 61959967 61959967 G A ANK3 Missense_Mutation p.H471Y 0.38 probably_damaging(0.998) TCGA-E9-A1RB-01 10 76748828 76748828 C G KAT6B Missense_Mutation p.Q863E 0.08 probably_damaging(0.96) TCGA-E9-A1RB-01 11 34160963 34160963 C T NAT10 Silent p.S780S 0.41 TCGA-E9-A1RB-01 11 55065574 55065574 T A TRIM51HP RNA 0.47 TCGA-E9-A1RB-01 11 67050279 67050279 C T ADRBK1 Missense_Mutation p.T406M 0.13 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RB-01 11 76506711 76506711 C T TSKU Silent p.T17T 0.09 TCGA-E9-A1RB-01 13 98828595 98828595 C A RNF113B Missense_Mutation p.G299V 0.65 deleterious(0) probably_damaging(0.987) TCGA-E9-A1RB-01 14 22133650 22133650 G T OR4E2 Silent p.V118V 0.63 TCGA-E9-A1RB-01 16 2105460 2105460 T C TSC2 Missense_Mutation p.L180P 0.08 deleterious(0) probably_damaging(1) TCGA-E9-A1RB-01 16 22142969 22142969 G A VWA3A Silent p.V597V 0.09 TCGA-E9-A1RB-01 16 624165 624165 G A PIGQ Missense_Mutation p.V31M 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-E9-A1RB-01 17 40456393 40456393 C T STAT5A Silent p.C401C 0.56 TCGA-E9-A1RB-01 17 56344804 56344804 G A LPO Silent p.K596K 0.32 TCGA-E9-A1RB-01 17 7577082 7577082 C G TP53 Missense_Mutation p.E286Q 0.58 deleterious(0) probably_damaging(0.98) TCGA-E9-A1RB-01 17 80129705 80129705 T A CCDC57 Missense_Mutation p.E585V 0.15 deleterious(0) probably_damaging(0.984) TCGA-E9-A1RB-01 18 5891633 5891633 A G TMEM200C Missense_Mutation p.S144P 0.23 tolerated(0.17) possibly_damaging(0.481) TCGA-E9-A1RB-01 18 72173106 72173106 C T CNDP2 Missense_Mutation p.P76L 0.47 deleterious(0.02) benign(0.037) TCGA-E9-A1RB-01 19 17740110 17740110 T C UNC13A Missense_Mutation p.Q1231R 0.09 tolerated(0.1) benign(0.101) TCGA-E9-A1RB-01 19 55341436 55341436 G A KIR3DL1 Splice_Site p.X386_splice 0.72 TCGA-E9-A1RB-01 19 6694484 6694484 C G C3 Missense_Mutation p.G1038R 0.29 deleterious(0) probably_damaging(0.989) TCGA-E9-A1RB-01 1 151735875 151735875 C A MRPL9 Missense_Mutation p.Q27H 0.19 tolerated(0.22) benign(0.155) TCGA-E9-A1RB-01 1 196711113 196711113 A G CFH Missense_Mutation p.Y1022C 0.25 deleterious(0) probably_damaging(0.963) TCGA-E9-A1RB-01 1 200378052 200378052 T C ZNF281 Missense_Mutation p.H261R 0.28 deleterious(0) probably_damaging(0.968) TCGA-E9-A1RB-01 1 32745462 32745462 C A LCK Missense_Mutation p.F354L 0.67 deleterious(0) benign(0.389) TCGA-E9-A1RB-01 20 41420080 41420080 C T PTPRT Missense_Mutation p.G81R 0.31 tolerated(0.11) probably_damaging(1) TCGA-E9-A1RB-01 21 31933504 31933505 CA - KRTAP19-7 Frame_Shift_Del p.L35Rfs*39 0.12 TCGA-E9-A1RB-01 2 160304785 160304785 G A BAZ2B Missense_Mutation p.S157L 0.22 benign(0.32) TCGA-E9-A1RB-01 2 175436606 175436606 C T WIPF1 Silent p.P309P 0.23 TCGA-E9-A1RB-01 2 74761688 74761688 C T LOXL3 Missense_Mutation p.R598H 0.23 tolerated(0.05) probably_damaging(0.995) TCGA-E9-A1RB-01 2 90229285 90229285 A C IGKV1D-42 Silent p.A35A 0.23 TCGA-E9-A1RB-01 2 91805706 91805706 G T AC116050.1 Intron 0.56 TCGA-E9-A1RB-01 3 112280408 112280408 G A ATG3 5'UTR 0.38 TCGA-E9-A1RB-01 3 14547146 14547146 C A GRIP2 RNA 0.34 TCGA-E9-A1RB-01 3 193854142 193854142 T C HES1 5'UTR 0.30 TCGA-E9-A1RB-01 5 115783352 115783352 C G SEMA6A Missense_Mutation p.V684L 0.38 tolerated(0.38) benign(0.04) TCGA-E9-A1RB-01 5 52377476 52377478 TCT - ITGA2 In_Frame_Del p.S1034del 0.11 TCGA-E9-A1RB-01 7 75182834 75182834 G T HIP1 Missense_Mutation p.S738Y 0.31 deleterious(0.04) benign(0.008) TCGA-E9-A1RB-01 8 97274180 97274180 C T PTDSS1 5'UTR 0.33 TCGA-E9-A1RB-01 9 131397466 131397466 G A WDR34 Silent p.L296L 0.22 TCGA-E9-A1RB-01 X 128649967 128649967 G A SMARCA1 Missense_Mutation p.R145C 0.16 deleterious(0) probably_damaging(1) TCGA-E9-A1RC-01 10 8115719 8115720 TA - GATA3 Frame_Shift_Del p.M357Efs*14 0.30 TCGA-E9-A1RC-01 11 4674561 4674561 C T OR51E1 Missense_Mutation p.R269W 0.51 tolerated(0.06) possibly_damaging(0.54) TCGA-E9-A1RC-01 11 55595368 55595368 T A OR5L2 Missense_Mutation p.I225N 0.33 deleterious(0) probably_damaging(0.983) TCGA-E9-A1RC-01 12 120128239 120128239 G A CIT Missense_Mutation p.P1968L 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-E9-A1RC-01 12 21028243 21028243 T C SLCO1B3 Missense_Mutation p.F268L 0.42 tolerated(1) benign(0.002) TCGA-E9-A1RC-01 12 54110179 54110179 T C CALCOCO1 Silent p.Q290Q 0.42 TCGA-E9-A1RC-01 13 48953760 48953760 C T RB1 Nonsense_Mutation p.R455* 0.89 TCGA-E9-A1RC-01 14 23818534 23818534 C A SLC22A17 Missense_Mutation p.R158L 0.21 deleterious(0) probably_damaging(0.997) TCGA-E9-A1RC-01 14 42360748 42360748 C T LRFN5 Missense_Mutation p.H561Y 0.27 tolerated(0.2) benign(0.004) TCGA-E9-A1RC-01 14 74340785 74340785 A G PTGR2 Silent p.Q72Q 0.59 TCGA-E9-A1RC-01 15 39886561 39886561 C - THBS1 Frame_Shift_Del p.Y1143Mfs*6 0.20 TCGA-E9-A1RC-01 15 90611283 90611283 C T ZNF710 Missense_Mutation p.T305M 0.63 deleterious(0) probably_damaging(0.994) TCGA-E9-A1RC-01 16 24373208 24373208 C T CACNG3 3'UTR 0.38 TCGA-E9-A1RC-01 16 67902251 67902251 G A NUTF2 Silent p.A36A 0.85 TCGA-E9-A1RC-01 17 47038347 47038347 G A GIP Missense_Mutation p.S118F 0.20 tolerated(0.77) benign(0.013) TCGA-E9-A1RC-01 17 65714064 65714064 A C NOL11 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.986) TCGA-E9-A1RC-01 17 77086889 77086890 - T RBFOX3 3'UTR 0.44 TCGA-E9-A1RC-01 17 80730364 80730364 G T TBCD Missense_Mutation p.A207S 0.63 deleterious(0.02) benign(0.244) TCGA-E9-A1RC-01 19 15904918 15904918 C T OR10H5 Silent p.F20F 0.31 TCGA-E9-A1RC-01 19 2852514 2852514 G T ZNF555 Missense_Mutation p.V151F 0.25 deleterious(0.04) benign(0.075) TCGA-E9-A1RC-01 1 152280087 152280087 C G FLG Missense_Mutation p.E2425D 0.13 probably_damaging(0.977) TCGA-E9-A1RC-01 1 171086558 171086558 C T FMO3 Silent p.I525I 0.10 TCGA-E9-A1RC-01 1 179833749 179833749 T G TOR1AIP2 Intron 0.57 TCGA-E9-A1RC-01 1 223285350 223285350 T G TLR5 Missense_Mutation p.N342H 0.13 deleterious(0) probably_damaging(0.998) TCGA-E9-A1RC-01 1 241669429 241669429 T C FH Missense_Mutation p.T260A 0.08 tolerated(0.77) benign(0) TCGA-E9-A1RC-01 1 39797089 39797089 A G MACF1 Intron 0.29 TCGA-E9-A1RC-01 1 42657000 42657000 G C FOXJ3 Missense_Mutation p.P442R 0.44 tolerated_low_confidence(0.55) benign(0.029) TCGA-E9-A1RC-01 20 31315732 31315732 C T COMMD7 Missense_Mutation p.S70N 0.32 tolerated(1) benign(0.006) TCGA-E9-A1RC-01 20 53208301 53208301 C T DOK5 Missense_Mutation p.R186W 0.15 deleterious(0) probably_damaging(0.967) TCGA-E9-A1RC-01 22 46763749 46763749 G T CELSR1 Silent p.S2652S 0.27 TCGA-E9-A1RC-01 2 136566446 136566446 G T LCT Silent p.P1157P 0.16 TCGA-E9-A1RC-01 2 179458370 179458370 G A TTN Missense_Mutation p.R19553W 0.34 TCGA-E9-A1RC-01 2 179536934 179536934 T C TTN Missense_Mutation p.E11664G 0.38 TCGA-E9-A1RC-01 2 190437615 190437615 A C SLC40A1 Nonsense_Mutation p.L115* 0.42 TCGA-E9-A1RC-01 2 98354503 98354503 C T ZAP70 Missense_Mutation p.R557W 0.23 deleterious(0) probably_damaging(0.997) TCGA-E9-A1RC-01 3 169889120 169889120 T C PHC3 Intron 0.26 TCGA-E9-A1RC-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.88 tolerated(0.11) possibly_damaging(0.529) TCGA-E9-A1RC-01 3 195460039 195460039 G A MUC20 Missense_Mutation p.A694T 0.17 tolerated(0.33) unknown(0) TCGA-E9-A1RC-01 3 53223073 53223073 G C PRKCD Splice_Site p.X519_splice 0.95 TCGA-E9-A1RC-01 4 187004668 187004668 G C TLR3 Missense_Mutation p.V610L 0.23 tolerated(0.35) benign(0) TCGA-E9-A1RC-01 4 96052464 96052464 T C BMPR1B Missense_Mutation p.S323P 0.26 tolerated(0.23) probably_damaging(0.938) TCGA-E9-A1RC-01 5 135651308 135651308 C T TRPC7 Missense_Mutation p.A314T 0.20 deleterious(0.05) possibly_damaging(0.588) TCGA-E9-A1RC-01 5 75427881 75427881 G A SV2C Silent p.A102A 0.58 TCGA-E9-A1RC-01 6 116937759 116937759 A G RSPH4A 5'UTR 0.55 TCGA-E9-A1RC-01 6 30671982 30671982 G A MDC1 Missense_Mutation p.L1660F 0.55 tolerated(0.28) possibly_damaging(0.827) TCGA-E9-A1RC-01 8 139164077 139164077 T A FAM135B Nonsense_Mutation p.K881* 0.24 TCGA-E9-A1RC-01 8 145108232 145108232 G A OPLAH Silent p.H917H 0.39 TCGA-E9-A1RC-01 8 21837630 21837630 A T XPO7 Missense_Mutation p.R291S 0.15 deleterious(0) probably_damaging(0.995) TCGA-E9-A1RC-01 9 135944148 135944148 G A CEL Missense_Mutation p.D332N 0.16 deleterious(0.04) possibly_damaging(0.786) TCGA-E9-A1RC-01 9 136211091 136211091 C T MED22 Missense_Mutation p.R101H 0.19 deleterious(0.03) benign(0.04) TCGA-E9-A1RC-01 9 139566830 139566830 C T EGFL7 3'UTR 0.25 TCGA-E9-A1RC-01 9 5969039 5969039 C A KIAA2026 Missense_Mutation p.G398W 0.33 deleterious(0) probably_damaging(1) TCGA-E9-A1RC-01 9 66459899 66459899 C T RP11-262H14.1 RNA 0.18 TCGA-E9-A1RC-01 X 129203349 129203349 G A ELF4 Silent p.D371D 0.28 TCGA-E9-A1RC-01 X 13587964 13587964 G A EGFL6 5'UTR 0.34 TCGA-E9-A1RC-01 X 152770766 152770766 C T BGN Silent p.S103S 0.35 TCGA-E9-A1RC-01 X 153174973 153174973 C A ARHGAP4 Missense_Mutation p.V851L 0.14 tolerated(0.43) benign(0.002) TCGA-E9-A1RC-01 X 21450902 21450902 C A CNKSR2 Missense_Mutation p.A134E 0.23 deleterious(0) benign(0.411) TCGA-E9-A1RD-01 12 125460001 125460001 G T DHX37 Missense_Mutation p.S315Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-E9-A1RD-01 12 57921444 57921444 G C MBD6 Splice_Site p.X746_splice 0.58 TCGA-E9-A1RD-01 16 10729664 10729664 G A TEKT5 Missense_Mutation p.R400W 0.07 tolerated(0.12) benign(0.112) TCGA-E9-A1RD-01 17 38556618 38556618 T C TOP2A Missense_Mutation p.E948G 0.20 deleterious(0.03) probably_damaging(0.911) TCGA-E9-A1RD-01 17 67081186 67081186 C T ABCA6 Silent p.A1389A 0.32 TCGA-E9-A1RD-01 19 48967593 48967593 C T KCNJ14 Silent p.A290A 0.18 TCGA-E9-A1RD-01 19 58386210 58386210 G A ZNF814 Missense_Mutation p.S183L 0.36 tolerated(0.61) probably_damaging(0.916) TCGA-E9-A1RD-01 19 7141753 7141753 C G INSR Missense_Mutation p.E873Q 0.36 deleterious(0.01) probably_damaging(0.925) TCGA-E9-A1RD-01 19 7992179 7992179 G A TIMM44 Missense_Mutation p.R418W 0.20 deleterious(0.02) benign(0.014) TCGA-E9-A1RD-01 1 32673075 32673075 C G IQCC Missense_Mutation p.Q345E 0.15 tolerated(0.22) benign(0.02) TCGA-E9-A1RD-01 2 166152440 166152440 G A SCN2A Missense_Mutation p.R36K 0.41 tolerated(1) benign(0.001) TCGA-E9-A1RD-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.41 deleterious(0.04) probably_damaging(0.96) TCGA-E9-A1RD-01 4 126336088 126336088 G A FAT4 Silent p.G1990G 0.55 TCGA-E9-A1RD-01 4 15629638 15629638 G A FBXL5 Missense_Mutation p.S304L 0.19 deleterious(0.02) benign(0.007) TCGA-E9-A1RD-01 4 42145871 42145871 C A BEND4 Nonsense_Mutation p.E210* 0.20 TCGA-E9-A1RD-01 5 140745887 140745887 G A PCDHGA5 Missense_Mutation p.V664M 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-E9-A1RD-01 5 179280390 179280390 C T C5orf45 Silent p.Q38Q 0.09 TCGA-E9-A1RD-01 5 56177410 56177411 - T MAP3K1 Frame_Shift_Ins p.S796Vfs*11 0.29 TCGA-E9-A1RD-01 5 56178459 56178460 - A MAP3K1 Frame_Shift_Ins p.T1145Nfs*6 0.24 TCGA-E9-A1RD-01 5 82850848 82850848 C T VCAN Silent p.G3242G 0.38 TCGA-E9-A1RD-01 6 3267796 3267796 G A PSMG4 Intron 0.33 TCGA-E9-A1RD-01 6 84233305 84233305 G A PRSS35 Missense_Mutation p.A49T 0.44 tolerated(0.66) benign(0) TCGA-E9-A1RD-01 7 76126735 76126735 C T DTX2 Missense_Mutation p.S364F 0.11 deleterious(0) probably_damaging(0.935) TCGA-E9-A1RD-01 8 104419920 104419920 G C SLC25A32 Missense_Mutation p.Q83E 0.55 deleterious(0.02) possibly_damaging(0.588) TCGA-E9-A1RD-01 X 154133122 154133122 G C F8 Missense_Mutation p.D1850E 0.19 deleterious(0) probably_damaging(0.998) TCGA-E9-A1RE-01 10 73044530 73044530 C A UNC5B Missense_Mutation p.L120I 0.41 tolerated(0.36) possibly_damaging(0.901) TCGA-E9-A1RE-01 11 4510284 4510284 C T OR52K1 Nonsense_Mutation p.Q52* 0.25 TCGA-E9-A1RE-01 11 67120970 67120970 G A POLD4 5'UTR 0.27 TCGA-E9-A1RE-01 12 52407973 52407973 C T GRASP Missense_Mutation p.R224W 0.31 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RE-01 12 57351117 57351117 G A RDH16 Silent p.L44L 0.50 TCGA-E9-A1RE-01 13 113140381 113140381 C T TUBGCP3 Missense_Mutation p.E884K 0.22 deleterious(0.02) probably_damaging(0.965) TCGA-E9-A1RE-01 13 114525012 114525012 C T GAS6 Missense_Mutation p.A601T 0.25 tolerated(0.37) benign(0.003) TCGA-E9-A1RE-01 13 38213437 38213437 C G TRPC4 Splice_Site p.X699_splice 0.57 TCGA-E9-A1RE-01 15 33872233 33872233 C A RYR3 Missense_Mutation p.T442N 0.46 benign(0.165) TCGA-E9-A1RE-01 15 42374005 42374005 C T PLA2G4D Missense_Mutation p.A271T 0.35 tolerated(0.43) benign(0.002) TCGA-E9-A1RE-01 16 26147331 26147331 A C HS3ST4 Missense_Mutation p.K378T 0.17 deleterious(0.01) possibly_damaging(0.535) TCGA-E9-A1RE-01 16 31092881 31092881 C T ZNF646 Missense_Mutation p.R1746W 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-E9-A1RE-01 17 48166523 48166523 A G ITGA3 Missense_Mutation p.H1032R 0.18 tolerated(0.25) benign(0.255) TCGA-E9-A1RE-01 17 60005329 60005329 C T INTS2 5'UTR 0.25 TCGA-E9-A1RE-01 17 72846369 72846369 G A GRIN2C Silent p.G489G 0.28 TCGA-E9-A1RE-01 19 12962989 12962989 G A MAST1 Missense_Mutation p.G313S 0.31 deleterious(0) probably_damaging(0.997) TCGA-E9-A1RE-01 19 13255448 13255448 G C STX10 Missense_Mutation p.Q206E 0.20 tolerated(0.65) benign(0.016) TCGA-E9-A1RE-01 19 15564993 15564993 C T RASAL3 Missense_Mutation p.R749H 0.08 tolerated(0.07) benign(0.033) TCGA-E9-A1RE-01 19 33355671 33355671 G A SLC7A9 Silent p.I33I 0.37 TCGA-E9-A1RE-01 19 41265405 41265405 C T SNRPA Missense_Mutation p.R106C 0.06 deleterious(0) possibly_damaging(0.752) TCGA-E9-A1RE-01 19 846175 846175 C T PRTN3 Missense_Mutation p.S133F 0.31 deleterious(0.04) benign(0.083) TCGA-E9-A1RE-01 19 900098 900098 C T R3HDM4 Missense_Mutation p.R175H 0.25 deleterious(0.01) probably_damaging(0.921) TCGA-E9-A1RE-01 1 102462446 102462446 G A OLFM3 5'UTR 0.27 TCGA-E9-A1RE-01 1 158627369 158627369 G T SPTA1 Missense_Mutation p.F901L 0.21 tolerated(0.87) benign(0.058) TCGA-E9-A1RE-01 1 170695530 170695530 C T PRRX1 Missense_Mutation p.A196V 0.25 tolerated(0.06) benign(0.118) TCGA-E9-A1RE-01 1 171956945 171956945 G A DNM3 Missense_Mutation p.V129M 0.27 deleterious(0.01) possibly_damaging(0.898) TCGA-E9-A1RE-01 1 180135688 180135688 T A QSOX1 Missense_Mutation p.C110S 0.17 deleterious(0) probably_damaging(1) TCGA-E9-A1RE-01 1 183556058 183556058 G A NCF2 Nonsense_Mutation p.R77* 0.30 TCGA-E9-A1RE-01 1 62910497 62910497 C T USP1 Nonsense_Mutation p.Q216* 0.22 TCGA-E9-A1RE-01 1 94643037 94643037 G A ARHGAP29 Intron 0.59 TCGA-E9-A1RE-01 20 47989458 47989458 T G KCNB1 3'UTR 0.77 TCGA-E9-A1RE-01 21 47412704 47412704 C T COL6A1 Missense_Mutation p.R439W 0.50 deleterious(0.01) probably_damaging(0.965) TCGA-E9-A1RE-01 22 23465418 23465418 G A GNAZ Missense_Mutation p.E290K 0.10 deleterious(0.01) benign(0.013) TCGA-E9-A1RE-01 3 112969456 112969456 G A BOC Missense_Mutation p.G51D 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-E9-A1RE-01 3 134323234 134323234 C T KY Silent p.G391G 0.70 TCGA-E9-A1RE-01 3 178916924 178916924 C T PIK3CA Missense_Mutation p.P104L 0.62 deleterious(0.01) probably_damaging(0.993) TCGA-E9-A1RE-01 3 196234580 196234580 C A SMCO1 3'UTR 0.35 TCGA-E9-A1RE-01 3 52939244 52939244 C T SFMBT1 Missense_Mutation p.E837K 0.08 deleterious(0) possibly_damaging(0.806) TCGA-E9-A1RE-01 3 57542637 57542637 C - PDE12 Frame_Shift_Del p.P178Lfs*67 0.36 TCGA-E9-A1RE-01 3 9956194 9956194 T C IL17RE Intron 0.63 TCGA-E9-A1RE-01 4 155298503 155298503 G A DCHS2 Missense_Mutation p.R110W 0.18 tolerated(0.07) benign(0.002) TCGA-E9-A1RE-01 4 190862021 190862021 G C FRG1 5'UTR 0.25 TCGA-E9-A1RE-01 4 48139295 48139295 T G TEC 3'UTR 0.58 TCGA-E9-A1RE-01 5 127685051 127685051 G C FBN2 Missense_Mutation p.R993G 0.19 deleterious(0.01) possibly_damaging(0.597) TCGA-E9-A1RE-01 5 129030517 129030517 C T ADAMTS19 Nonsense_Mutation p.R969* 0.28 TCGA-E9-A1RE-01 5 140558070 140558070 C A PCDHB8 Missense_Mutation p.A152E 0.32 tolerated_low_confidence(0.14) benign(0.002) TCGA-E9-A1RE-01 5 160033805 160033805 G A ATP10B Nonsense_Mutation p.R1043* 0.24 TCGA-E9-A1RE-01 5 71616019 71616019 C T MRPS27 Missense_Mutation p.M10I 0.28 tolerated(0.47) benign(0.001) TCGA-E9-A1RE-01 6 160468310 160468310 C G IGF2R Missense_Mutation p.A724G 0.41 deleterious(0.01) benign(0.277) TCGA-E9-A1RE-01 6 160560827 160560827 C T SLC22A1 Missense_Mutation p.R402C 0.30 deleterious(0.01) benign(0.351) TCGA-E9-A1RE-01 6 5545516 5545516 C T FARS2 Silent p.D336D 0.31 TCGA-E9-A1RE-01 7 100470878 100470878 G A TRIP6 Missense_Mutation p.A462T 0.22 tolerated(0.16) probably_damaging(1) TCGA-E9-A1RE-01 7 117375356 117375356 G A CTTNBP2 Missense_Mutation p.R1219C 0.30 deleterious(0.01) probably_damaging(0.931) TCGA-E9-A1RE-01 7 121695126 121695126 C T PTPRZ1 Silent p.I2171I 0.21 TCGA-E9-A1RE-01 8 110527447 110527447 T C PKHD1L1 Missense_Mutation p.Y3868H 0.32 tolerated(0.05) probably_damaging(0.99) TCGA-E9-A1RE-01 8 26722154 26722154 G A ADRA1A Silent p.T111T 0.78 TCGA-E9-A1RE-01 8 35541244 35541244 C T UNC5D Silent p.Y250Y 0.45 TCGA-E9-A1RE-01 8 86572159 86572159 T C REXO1L1P 3'UTR 0.12 TCGA-E9-A1RE-01 9 8504378 8504378 A G PTPRD Missense_Mutation p.S569P 0.56 tolerated(0.06) probably_damaging(0.996) TCGA-E9-A1RE-01 9 91934622 91934622 A G SECISBP2 Missense_Mutation p.N31S 0.25 tolerated(0.44) benign(0.014) TCGA-E9-A1RE-01 X 103294608 103294608 T C H2BFM Missense_Mutation p.I22T 0.36 tolerated(1) benign(0.003) TCGA-E9-A1RE-01 X 107422068 107422068 G A COL4A6 Silent p.H788H 0.28 TCGA-E9-A1RE-01 X 119421019 119421019 T C TMEM255A Missense_Mutation p.E138G 0.31 tolerated(0.46) benign(0.164) TCGA-E9-A1RE-01 X 31514996 31514996 A C DMD Missense_Mutation p.V2819G 0.29 possibly_damaging(0.504) TCGA-E9-A1RE-01 X 32366618 32366618 G T DMD Missense_Mutation p.Q1785K 0.14 benign(0.092) TCGA-E9-A1RE-01 X 54569444 54569444 G A GNL3L Silent p.R121R 0.34 TCGA-E9-A1RE-01 X 55103846 55103846 G A PAGE2B Missense_Mutation p.A70T 0.08 tolerated(0.05) probably_damaging(0.998) TCGA-E9-A1RF-01 10 118891744 118891744 C G VAX1 3'Flank 0.19 TCGA-E9-A1RF-01 10 8111471 8111472 - T GATA3 Frame_Shift_Ins p.C321Lfs*32 0.38 TCGA-E9-A1RF-01 10 98092226 98092226 G A DNTT Missense_Mutation p.R411H 0.23 tolerated(0.6) benign(0) TCGA-E9-A1RF-01 11 114549222 114549222 C A NXPE2 5'UTR 0.40 TCGA-E9-A1RF-01 11 1268294 1268294 C A MUC5B Missense_Mutation p.T3395N 0.27 unknown(0) TCGA-E9-A1RF-01 11 1271076 1271076 C T MUC5B Silent p.S4322S 0.14 TCGA-E9-A1RF-01 11 22696444 22696444 G A GAS2 Missense_Mutation p.R10H 0.18 deleterious(0.04) benign(0.032) TCGA-E9-A1RF-01 11 33581421 33581421 T C KIAA1549L Missense_Mutation p.F1031L 0.21 deleterious(0) probably_damaging(0.983) TCGA-E9-A1RF-01 11 47869781 47869781 G C NUP160 Silent p.V64V 0.31 TCGA-E9-A1RF-01 11 61017398 61017398 G C PGA5 Missense_Mutation p.S310T 0.22 tolerated(0.06) benign(0.05) TCGA-E9-A1RF-01 11 66099854 66099854 G A RIN1 Missense_Mutation p.R749W 0.19 deleterious_low_confidence(0.03) benign(0.332) TCGA-E9-A1RF-01 11 75298081 75298081 A G MAP6 3'UTR 0.20 TCGA-E9-A1RF-01 12 100444935 100444935 G C UHRF1BP1L Missense_Mutation p.N1163K 0.16 tolerated(0.87) benign(0.001) TCGA-E9-A1RF-01 12 110815309 110815309 C T ANAPC7 Missense_Mutation p.V450I 0.33 deleterious(0) possibly_damaging(0.881) TCGA-E9-A1RF-01 12 122277893 122277893 G A HPD Missense_Mutation p.P339L 0.18 deleterious(0.01) possibly_damaging(0.595) TCGA-E9-A1RF-01 12 129558828 129558828 C A TMEM132D Missense_Mutation p.W964C 0.18 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 12 1940299 1940299 C A LRTM2 Missense_Mutation p.A89D 0.22 tolerated(0.12) benign(0.197) TCGA-E9-A1RF-01 12 368960 368960 G A SLC6A13 Intron 0.23 TCGA-E9-A1RF-01 12 44176271 44176271 C A IRAK4 Missense_Mutation p.S368Y 0.33 deleterious(0.01) probably_damaging(1) TCGA-E9-A1RF-01 12 56418866 56418866 G T IKZF4 Missense_Mutation p.E70D 0.20 tolerated(0.24) benign(0.02) TCGA-E9-A1RF-01 12 7280866 7280866 G A RBP5 Silent p.D74D 0.12 TCGA-E9-A1RF-01 13 103459852 103459852 G T BIVM-ERCC5 Missense_Mutation p.A51S 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-E9-A1RF-01 13 108882099 108882099 C G ABHD13 Missense_Mutation p.T178S 0.15 tolerated(1) benign(0.012) TCGA-E9-A1RF-01 14 103395143 103395143 C T AMN Missense_Mutation p.P115L 0.38 deleterious(0) possibly_damaging(0.495) TCGA-E9-A1RF-01 14 103986486 103986486 G A CKB Missense_Mutation p.R314W 0.16 deleterious(0) probably_damaging(0.974) TCGA-E9-A1RF-01 14 104040485 104040485 C T RP11-73M18.2 Silent p.G134G 0.16 TCGA-E9-A1RF-01 14 24651259 24651259 C A IPO4 Silent p.V903V 0.15 TCGA-E9-A1RF-01 14 31349936 31349936 G C COCH Missense_Mutation p.A209P 0.22 tolerated(0.11) probably_damaging(0.98) TCGA-E9-A1RF-01 14 34904481 34904481 C T SPTSSA Missense_Mutation p.A48T 0.21 tolerated(0.31) benign(0.077) TCGA-E9-A1RF-01 14 60908795 60908795 T G C14orf39 Missense_Mutation p.I520L 0.17 deleterious(0.03) benign(0.274) TCGA-E9-A1RF-01 14 70925210 70925210 T G ADAM21 Missense_Mutation p.W332G 0.10 deleterious(0) benign(0.079) TCGA-E9-A1RF-01 14 77929072 77929072 A G AHSA1 Missense_Mutation p.M148V 0.28 tolerated(0.07) benign(0.001) TCGA-E9-A1RF-01 14 77944627 77944627 A T ISM2 Missense_Mutation p.W386R 0.08 tolerated(0.06) possibly_damaging(0.861) TCGA-E9-A1RF-01 15 55633010 55633010 G C PIGB Silent p.L349L 0.35 TCGA-E9-A1RF-01 15 86768164 86768164 G A AGBL1 Missense_Mutation p.A124T 0.07 deleterious(0.03) probably_damaging(0.983) TCGA-E9-A1RF-01 16 15677024 15677024 A C C16orf45 Missense_Mutation p.E144A 0.26 deleterious(0) possibly_damaging(0.527) TCGA-E9-A1RF-01 16 24124299 24124299 A T PRKCB Missense_Mutation p.K276M 0.20 deleterious(0) probably_damaging(0.967) TCGA-E9-A1RF-01 16 30745237 30745237 G T SRCAP Nonsense_Mutation p.E2173* 0.21 TCGA-E9-A1RF-01 16 61823301 61823301 C G CDH8 Missense_Mutation p.D455H 0.11 deleterious(0) probably_damaging(0.989) TCGA-E9-A1RF-01 16 71488069 71488069 C G ZNF23 5'UTR 0.19 TCGA-E9-A1RF-01 16 75267782 75267782 T C BCAR1 Missense_Mutation p.I734V 0.31 deleterious(0) probably_damaging(0.989) TCGA-E9-A1RF-01 16 88781476 88781476 G A CTU2 Silent p.P480P 0.41 TCGA-E9-A1RF-01 16 8890208 8890208 C T TMEM186 Silent p.L81L 0.21 TCGA-E9-A1RF-01 17 10318692 10318692 C G MYH8 Missense_Mutation p.E220Q 0.41 deleterious(0.02) probably_damaging(0.976) TCGA-E9-A1RF-01 17 15989636 15989636 G T NCOR1 Nonsense_Mutation p.S1046* 0.49 TCGA-E9-A1RF-01 17 33443953 33443953 C T RAD51D Missense_Mutation p.G83E 0.26 tolerated(1) unknown(0) TCGA-E9-A1RF-01 17 39921275 39921275 G C JUP Missense_Mutation p.I318M 0.19 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 17 47793671 47793671 G A FAM117A Missense_Mutation p.S306F 0.28 deleterious(0.01) possibly_damaging(0.898) TCGA-E9-A1RF-01 17 57228573 57228573 C T SKA2 Intron 0.12 TCGA-E9-A1RF-01 17 61497708 61497708 C A TANC2 Silent p.I1455I 0.07 TCGA-E9-A1RF-01 17 65051354 65051354 C A CACNG1 Missense_Mutation p.A147E 0.07 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 18 2937960 2937960 C G LPIN2 Missense_Mutation p.V300L 0.38 tolerated(0.09) possibly_damaging(0.468) TCGA-E9-A1RF-01 18 63491905 63491905 G A CDH7 Silent p.E273E 0.21 TCGA-E9-A1RF-01 18 72113978 72113978 C A FAM69C Missense_Mutation p.G247C 0.14 tolerated(0.05) possibly_damaging(0.799) TCGA-E9-A1RF-01 19 10897263 10897263 G T DNM2 Missense_Mutation p.E291D 0.17 tolerated(1) benign(0.006) TCGA-E9-A1RF-01 19 18545910 18545910 G A ISYNA1 Missense_Mutation p.P497L 0.20 deleterious(0) possibly_damaging(0.88) TCGA-E9-A1RF-01 19 18899673 18899673 G A COMP Missense_Mutation p.P193L 0.22 tolerated(0.17) possibly_damaging(0.745) TCGA-E9-A1RF-01 19 19112432 19112432 G A SUGP2 Missense_Mutation p.S994F 0.20 deleterious(0) benign(0.397) TCGA-E9-A1RF-01 19 36220105 36220105 G A KMT2B Missense_Mutation p.V1609I 0.33 probably_damaging(0.939) TCGA-E9-A1RF-01 19 4028738 4028738 G C PIAS4 Missense_Mutation p.K231N 0.19 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 19 41175875 41175875 G C NUMBL Missense_Mutation p.L363V 0.29 deleterious(0.02) probably_damaging(0.973) TCGA-E9-A1RF-01 19 46198851 46198851 G A QPCTL Missense_Mutation p.D170N 0.20 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 19 54578113 54578113 A C TARM1 Silent p.L108L 0.10 TCGA-E9-A1RF-01 19 58420121 58420121 C G ZNF417 Missense_Mutation p.V509L 0.12 tolerated(0.45) benign(0.002) TCGA-E9-A1RF-01 19 58489955 58489955 T G ZNF606 Missense_Mutation p.H698P 0.15 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RF-01 19 8032481 8032481 T G ELAVL1 Silent p.G208G 0.21 TCGA-E9-A1RF-01 1 101004699 101004699 C T GPR88 Silent p.F59F 0.29 TCGA-E9-A1RF-01 1 103405914 103405914 G C COL11A1 Missense_Mutation p.P1118R 0.11 unknown(0) TCGA-E9-A1RF-01 1 11893963 11893963 T - CLCN6 Frame_Shift_Del p.F468Sfs*35 0.35 TCGA-E9-A1RF-01 1 119467310 119467310 T C TBX15 Missense_Mutation p.K112E 0.24 deleterious(0) probably_damaging(0.934) TCGA-E9-A1RF-01 1 145457582 145457582 C A POLR3GL Missense_Mutation p.E116D 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-E9-A1RF-01 1 149858554 149858554 G A HIST2H2AC Silent p.K10K 0.19 TCGA-E9-A1RF-01 1 151492732 151492732 C T CGN Silent p.L322L 0.19 TCGA-E9-A1RF-01 1 152128108 152128108 C G RPTN Missense_Mutation p.K489N 0.15 deleterious(0) benign(0.028) TCGA-E9-A1RF-01 1 155187362 155187362 A G MTX1 3'Flank 0.58 TCGA-E9-A1RF-01 1 15654883 15654883 C T FHAD1 Silent p.T161T 0.14 TCGA-E9-A1RF-01 1 169825046 169825046 C T SCYL3 Silent p.L455L 0.12 TCGA-E9-A1RF-01 1 171292223 171292223 C T FMO4 Silent p.D71D 0.06 TCGA-E9-A1RF-01 1 185892721 185892721 C A HMCN1 Silent p.G407G 0.17 TCGA-E9-A1RF-01 1 203468972 203468972 C T OPTC Missense_Mutation p.A242V 0.11 tolerated(0.09) benign(0.391) TCGA-E9-A1RF-01 1 212912896 212912896 C G NSL1 Missense_Mutation p.E183Q 0.20 tolerated(1) benign(0.026) TCGA-E9-A1RF-01 1 228521396 228521396 C A OBSCN Silent p.V6280V 0.17 TCGA-E9-A1RF-01 1 231411054 231411054 C T GNPAT Missense_Mutation p.L611F 0.10 deleterious(0.01) probably_damaging(0.944) TCGA-E9-A1RF-01 1 23689476 23689476 T A ZNF436 Silent p.T133T 0.07 TCGA-E9-A1RF-01 1 240494024 240494024 C T FMN2 Missense_Mutation p.P1520L 0.61 possibly_damaging(0.766) TCGA-E9-A1RF-01 1 25687261 25687261 C G TMEM50A 3'UTR 0.16 TCGA-E9-A1RF-01 1 6522132 6522132 G T TNFRSF25 Missense_Mutation p.P292T 0.23 deleterious(0.01) benign(0.373) TCGA-E9-A1RF-01 1 67855764 67855764 C T IL12RB2 Missense_Mutation p.P667S 0.14 deleterious(0) probably_damaging(0.97) TCGA-E9-A1RF-01 1 89658761 89658761 G C GBP4 Missense_Mutation p.L166V 0.34 deleterious(0.03) probably_damaging(0.954) TCGA-E9-A1RF-01 20 16354954 16354954 T C KIF16B Missense_Mutation p.S1100G 0.20 tolerated_low_confidence(0.18) benign(0.002) TCGA-E9-A1RF-01 20 17705670 17705670 G C BANF2 Missense_Mutation p.E7D 0.17 tolerated(0.32) benign(0) TCGA-E9-A1RF-01 20 32873245 32873245 C A AHCY Splice_Site p.X389_splice 0.21 TCGA-E9-A1RF-01 20 43851891 43851891 C G SEMG2 Missense_Mutation p.H540D 0.15 tolerated(0.15) possibly_damaging(0.53) TCGA-E9-A1RF-01 20 45353855 45353855 C T SLC2A10 Silent p.L60L 0.10 TCGA-E9-A1RF-01 20 50405579 50405579 T - SALL4 Frame_Shift_Del p.M855* 0.17 TCGA-E9-A1RF-01 20 62626765 62626765 G A PRPF6 Missense_Mutation p.G234D 0.23 tolerated(0.24) benign(0.001) TCGA-E9-A1RF-01 20 62737907 62737907 A T NPBWR2 Missense_Mutation p.L93H 0.12 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RF-01 21 15554120 15554120 G T LIPI Missense_Mutation p.T222K 0.37 deleterious(0.01) possibly_damaging(0.902) TCGA-E9-A1RF-01 21 41465724 41465724 G A DSCAM Silent p.S1258S 0.27 TCGA-E9-A1RF-01 21 45999699 45999699 G A KRTAP10-5 Missense_Mutation p.R253C 0.36 tolerated(0.06) benign(0.252) TCGA-E9-A1RF-01 22 25023502 25023502 C T GGT1 Missense_Mutation p.T375M 0.26 tolerated(0.18) benign(0.067) TCGA-E9-A1RF-01 22 32589028 32589028 G T RFPL2 Nonsense_Mutation p.C139* 0.17 TCGA-E9-A1RF-01 22 41253216 41253216 G C XPNPEP3 Missense_Mutation p.V11L 0.16 tolerated_low_confidence(0.7) benign(0.002) TCGA-E9-A1RF-01 22 42483141 42483141 G A NDUFA6 Missense_Mutation p.R86W 0.20 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RF-01 2 105710082 105710082 G A MRPS9 Silent p.P305P 0.08 TCGA-E9-A1RF-01 2 116066924 116066924 C G DPP10 Missense_Mutation p.T61S 0.32 tolerated(0.34) benign(0.06) TCGA-E9-A1RF-01 2 128407626 128407626 C A GPR17 Missense_Mutation p.P14T 0.24 tolerated_low_confidence(0.28) benign(0) TCGA-E9-A1RF-01 2 133483301 133483301 G T NCKAP5 Missense_Mutation p.A1871D 0.18 deleterious(0) possibly_damaging(0.643) TCGA-E9-A1RF-01 2 135756375 135756375 G T MAP3K19 Missense_Mutation p.N169K 0.17 tolerated(0.11) benign(0.164) TCGA-E9-A1RF-01 2 152977211 152977211 C T STAM2 Silent p.V485V 0.14 TCGA-E9-A1RF-01 2 158593897 158593897 G A ACVR1 3'UTR 0.25 TCGA-E9-A1RF-01 2 179438827 179438827 G T TTN Missense_Mutation p.P24011Q 0.14 TCGA-E9-A1RF-01 2 183843584 183843584 C A NCKAP1 Missense_Mutation p.M473I 0.20 tolerated(0.66) benign(0.099) TCGA-E9-A1RF-01 2 207625725 207625725 C A MDH1B Missense_Mutation p.C12F 0.16 deleterious(0) probably_damaging(0.994) TCGA-E9-A1RF-01 2 218745658 218745658 G A TNS1 Silent p.Y339Y 0.11 TCGA-E9-A1RF-01 2 225652079 225652079 C T DOCK10 Silent p.E1818E 0.17 TCGA-E9-A1RF-01 2 234681279 234681279 T A UGT1A4 3'UTR 0.14 TCGA-E9-A1RF-01 2 24086409 24086409 C A ATAD2B Missense_Mutation p.G441C 0.35 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 2 80773158 80773158 A C CTNNA2 Missense_Mutation p.T504P 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-E9-A1RF-01 2 85570908 85570908 G C RETSAT Missense_Mutation p.T516S 0.28 tolerated(0.77) benign(0.002) TCGA-E9-A1RF-01 2 8919137 8919137 G A KIDINS220 Missense_Mutation p.R835C 0.19 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 3 113524322 113524322 C T ATP6V1A Missense_Mutation p.R571C 0.13 deleterious(0) probably_damaging(0.951) TCGA-E9-A1RF-01 3 122269492 122269492 T G PARP9 Missense_Mutation p.H457P 0.05 deleterious(0.01) benign(0.396) TCGA-E9-A1RF-01 3 129286352 129286352 G A PLXND1 Missense_Mutation p.R1357C 0.25 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 3 194151723 194151723 C T ATP13A3 Missense_Mutation p.R858H 0.21 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RF-01 3 38182756 38182756 C G MYD88 Silent p.A311A 0.25 TCGA-E9-A1RF-01 3 39543701 39543701 T G MOBP Missense_Mutation p.C47W 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E9-A1RF-01 3 62267241 62267241 G A PTPRG Missense_Mutation p.E1257K 0.24 deleterious(0.03) benign(0.158) TCGA-E9-A1RF-01 3 77089890 77089890 C T ROBO2 Intron 0.19 TCGA-E9-A1RF-01 3 78987996 78987996 G T ROBO1 Missense_Mutation p.A85E 0.15 deleterious(0) probably_damaging(0.995) TCGA-E9-A1RF-01 4 169632939 169632939 C T PALLD Missense_Mutation p.T610M 0.25 deleterious(0.04) benign(0.179) TCGA-E9-A1RF-01 4 1834627 1834627 A G LETM1 Silent p.F308F 0.26 TCGA-E9-A1RF-01 4 187004105 187004105 T C TLR3 Missense_Mutation p.I422T 0.21 deleterious(0) possibly_damaging(0.791) TCGA-E9-A1RF-01 4 44709931 44709931 T C GNPDA2 Missense_Mutation p.I203V 0.29 tolerated_low_confidence(0.64) possibly_damaging(0.658) TCGA-E9-A1RF-01 4 46264108 46264108 G C GABRA2 Missense_Mutation p.I298M 0.15 deleterious(0) probably_damaging(0.99) TCGA-E9-A1RF-01 4 6863768 6863768 A T KIAA0232 Silent p.I553I 0.18 TCGA-E9-A1RF-01 4 73414439 73414439 A T ADAMTS3 Missense_Mutation p.F87Y 0.20 deleterious(0.01) possibly_damaging(0.708) TCGA-E9-A1RF-01 5 122491625 122491625 A T PRDM6 Missense_Mutation p.E316D 0.16 tolerated(0.53) benign(0.002) TCGA-E9-A1RF-01 5 178154017 178154017 C G ZNF354A Missense_Mutation p.R48T 0.14 tolerated(0.53) benign(0.014) TCGA-E9-A1RF-01 5 26890044 26890044 G A CDH9 Silent p.H471H 0.11 TCGA-E9-A1RF-01 5 60839621 60839621 A T ZSWIM6 Missense_Mutation p.Y1042F 0.21 tolerated(0.19) benign(0.017) TCGA-E9-A1RF-01 6 102483396 102483396 G C GRIK2 Missense_Mutation p.G756R 0.13 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 6 107908370 107908370 C G SOBP Missense_Mutation p.C220W 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-E9-A1RF-01 6 118953657 118953657 C G CEP85L Missense_Mutation p.G67A 0.10 tolerated(0.05) probably_damaging(1) TCGA-E9-A1RF-01 6 118953664 118953664 C T CEP85L Missense_Mutation p.D65N 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RF-01 6 160200683 160200683 T - TCP1 Frame_Shift_Del p.N477Tfs*7 0.20 TCGA-E9-A1RF-01 6 165792776 165792776 A G PDE10A Missense_Mutation p.I631T 0.53 deleterious(0.04) benign(0.105) TCGA-E9-A1RF-01 6 27841034 27841034 C T HIST1H4L Missense_Mutation p.M85I 0.32 tolerated(0.06) benign(0.133) TCGA-E9-A1RF-01 6 35436206 35436206 G T RPL10A 5'UTR 0.35 TCGA-E9-A1RF-01 6 46793183 46793183 A G MEP1A Missense_Mutation p.D244G 0.11 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 6 53140987 53140987 G C ELOVL5 Nonsense_Mutation p.S132* 0.30 TCGA-E9-A1RF-01 7 110764958 110764958 A G LRRN3 3'UTR 0.27 TCGA-E9-A1RF-01 7 137293718 137293718 G C DGKI Silent p.G387G 0.17 TCGA-E9-A1RF-01 7 4947132 4947132 G A MMD2 Silent p.H236H 0.17 TCGA-E9-A1RF-01 7 64254854 64254854 C G ZNF138 5'UTR 0.21 TCGA-E9-A1RF-01 7 83037717 83037717 G A SEMA3E Missense_Mutation p.R213C 0.09 deleterious(0) probably_damaging(1) TCGA-E9-A1RF-01 7 92731415 92731415 G C SAMD9 Missense_Mutation p.C1332W 0.25 tolerated(0.17) benign(0.325) TCGA-E9-A1RF-01 8 131916201 131916201 G C ADCY8 Missense_Mutation p.F576L 0.17 tolerated(0.09) benign(0.047) TCGA-E9-A1RF-01 8 19822906 19822906 C G LPL 3'UTR 0.21 TCGA-E9-A1RF-01 8 61765760 61765760 C G CHD7 Missense_Mutation p.S2159C 0.12 benign(0.188) TCGA-E9-A1RF-01 8 91638033 91638033 T A TMEM64 Missense_Mutation p.N337Y 0.19 deleterious(0) possibly_damaging(0.629) TCGA-E9-A1RF-01 9 123201828 123201828 G C CDK5RAP2 Missense_Mutation p.P1191A 0.14 tolerated(0.1) possibly_damaging(0.9) TCGA-E9-A1RF-01 9 124094889 124094889 C T GSN 3'UTR 0.15 TCGA-E9-A1RF-01 9 130095401 130095401 G C GARNL3 Splice_Site p.X257_splice 0.24 TCGA-E9-A1RF-01 9 21385064 21385064 G T IFNA2 Missense_Mutation p.L89I 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-E9-A1RF-01 9 43630592 43630592 C A SPATA31A6 Missense_Mutation p.G37V 0.29 tolerated(0.43) possibly_damaging(0.696) TCGA-E9-A1RF-01 X 105879795 105879795 G T CXorf57 Missense_Mutation p.Q442H 0.18 deleterious(0) probably_damaging(0.996) TCGA-E9-A1RF-01 X 109764333 109764333 C G TDGF1P3 RNA 0.24 TCGA-E9-A1RF-01 X 15306047 15306047 G A ASB11 Missense_Mutation p.A268V 0.19 tolerated(0.45) benign(0.125) TCGA-E9-A1RF-01 X 154133160 154133160 C A F8 Missense_Mutation p.V1838L 0.62 deleterious(0) probably_damaging(0.991) TCGA-E9-A1RF-01 X 23928436 23928436 A G CXorf58 Missense_Mutation p.N6S 0.09 tolerated_low_confidence(0.21) benign(0.342) TCGA-E9-A1RF-01 X 41043849 41043849 C G USP9X Missense_Mutation p.T1160S 0.39 tolerated(0.22) probably_damaging(0.952) TCGA-E9-A1RF-01 X 44913106 44913106 G C KDM6A Missense_Mutation p.D261H 0.24 deleterious(0) probably_damaging(0.928) TCGA-E9-A1RF-01 X 69672527 69672527 C G DLG3 Intron 0.18 TCGA-E9-A1RG-01 10 71835425 71835425 G A H2AFY2 Missense_Mutation p.R4Q 0.26 deleterious(0) unknown(0) TCGA-E9-A1RG-01 10 89268241 89268241 A T MINPP1 Missense_Mutation p.L262F 0.22 tolerated(0.26) possibly_damaging(0.739) TCGA-E9-A1RG-01 11 32675581 32675581 T G CCDC73 Missense_Mutation p.E259D 0.27 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RG-01 11 62394094 62394094 T G GANAB Silent p.S842S 0.69 TCGA-E9-A1RG-01 11 67925891 67925891 G A SUV420H1 Missense_Mutation p.A641V 0.30 tolerated(0.59) benign(0.001) TCGA-E9-A1RG-01 12 32137328 32137328 T C KIAA1551 Missense_Mutation p.C1147R 0.45 tolerated(0.05) possibly_damaging(0.748) TCGA-E9-A1RG-01 13 113838712 113838712 T C PCID2 Silent p.T265T 0.76 TCGA-E9-A1RG-01 14 21834653 21834653 C A SUPT16H Missense_Mutation p.D331Y 0.20 deleterious(0.01) possibly_damaging(0.905) TCGA-E9-A1RG-01 16 10626615 10626615 C T EMP2 3'UTR 0.41 TCGA-E9-A1RG-01 19 11027383 11027383 C T CARM1 Missense_Mutation p.S317F 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-E9-A1RG-01 19 17756790 17756790 C G UNC13A Missense_Mutation p.E725D 0.40 deleterious(0) probably_damaging(0.994) TCGA-E9-A1RG-01 19 17756832 17756832 C A UNC13A Silent p.R711R 0.29 TCGA-E9-A1RG-01 19 58232276 58232276 C G ZNF671 Missense_Mutation p.G393A 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-E9-A1RG-01 1 11594443 11594443 G A PTCHD2 Silent p.T1127T 0.28 TCGA-E9-A1RG-01 1 12378344 12378344 C T VPS13D Missense_Mutation p.S2455F 0.33 probably_damaging(0.977) TCGA-E9-A1RG-01 1 225977174 225977174 T C SRP9 3'UTR 0.14 TCGA-E9-A1RG-01 1 52530570 52530571 - A BTF3L4 Frame_Shift_Ins p.L46Tfs*5 0.20 TCGA-E9-A1RG-01 2 190620045 190620045 T C OSGEPL1 Missense_Mutation p.I155V 0.25 tolerated(1) benign(0.012) TCGA-E9-A1RG-01 2 85769862 85769862 C G MAT2A Missense_Mutation p.L315V 0.62 deleterious(0.01) probably_damaging(0.979) TCGA-E9-A1RG-01 3 118647513 118647513 G A IGSF11 Silent p.H89H 0.58 TCGA-E9-A1RG-01 3 119642322 119642322 C T GSK3B Silent p.E125E 0.31 TCGA-E9-A1RG-01 3 12531481 12531481 A G TSEN2 Missense_Mutation p.Y61C 0.27 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RG-01 3 132277850 132277850 G A ACAD11 Missense_Mutation p.R770W 0.38 deleterious(0.03) benign(0.006) TCGA-E9-A1RG-01 3 134280573 134280573 C T CEP63 3'UTR 0.44 TCGA-E9-A1RG-01 3 196199594 196199594 A G RNF168 Missense_Mutation p.I271T 0.23 tolerated(0.59) benign(0.003) TCGA-E9-A1RG-01 3 47882665 47882665 C G DHX30 Nonsense_Mutation p.S222* 0.18 TCGA-E9-A1RG-01 3 49163267 49163267 G A LAMB2 Nonsense_Mutation p.Q801* 0.32 TCGA-E9-A1RG-01 4 114203939 114203939 A C ANK2 Missense_Mutation p.T664P 0.37 probably_damaging(0.993) TCGA-E9-A1RG-01 4 142150852 142150852 G T ZNF330 Splice_Site p.X140_splice 0.21 TCGA-E9-A1RG-01 4 162680584 162680584 C T FSTL5 Missense_Mutation p.E236K 0.13 tolerated(0.33) probably_damaging(0.952) TCGA-E9-A1RG-01 5 112178062 112178063 - CCAGCCTCCAAAAGCCC APC Frame_Shift_Ins p.S2258Pfs*27 0.14 TCGA-E9-A1RG-01 5 140174750 140174750 G A PCDHA2 Silent p.A67A 0.26 TCGA-E9-A1RG-01 5 140711823 140711823 G A PCDHGA1 Silent p.Q524Q 0.24 TCGA-E9-A1RG-01 5 167645851 167645851 C A TENM2 Missense_Mutation p.P1652H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A1RG-01 5 80553653 80553653 G A CKMT2 Missense_Mutation p.R286Q 0.23 deleterious(0) probably_damaging(0.992) TCGA-E9-A1RG-01 5 90670780 90670780 T C ARRDC3 Missense_Mutation p.I277V 0.31 deleterious(0.04) benign(0.152) TCGA-E9-A1RG-01 7 107684275 107684275 C G LAMB4 Missense_Mutation p.G1465R 0.19 tolerated(0.53) benign(0.001) TCGA-E9-A1RG-01 7 142021186 142021186 C G TRBV5-1 Missense_Mutation p.Q56E 0.30 deleterious(0) probably_damaging(0.989) TCGA-E9-A1RG-01 7 48314170 48314170 G C ABCA13 Missense_Mutation p.R1636T 0.56 probably_damaging(0.92) TCGA-E9-A1RG-01 7 6634119 6634119 C A C7orf26 Nonsense_Mutation p.Y156* 0.29 TCGA-E9-A1RG-01 7 75513151 75513151 C T RHBDD2 Missense_Mutation p.A241V 0.12 deleterious(0.03) benign(0.026) TCGA-E9-A1RG-01 8 107773229 107773229 C T ABRA 3'UTR 0.17 TCGA-E9-A1RG-01 X 10491176 10491176 C G MID1 Missense_Mutation p.E238Q 0.29 tolerated(0.24) possibly_damaging(0.574) TCGA-E9-A1RH-01 10 105233294 105233294 G T CALHM3 Missense_Mutation p.D237E 0.36 tolerated(0.65) probably_damaging(0.972) TCGA-E9-A1RH-01 10 48389545 48389545 C T RBP3 Missense_Mutation p.D445N 0.13 deleterious(0) probably_damaging(0.984) TCGA-E9-A1RH-01 10 50964886 50964886 C T OGDHL Missense_Mutation p.R104Q 0.13 tolerated(0.59) benign(0) TCGA-E9-A1RH-01 10 61900242 61900242 C T ANK3 Intron 0.18 TCGA-E9-A1RH-01 10 61958143 61958143 G A ANK3 Silent p.A548A 0.05 TCGA-E9-A1RH-01 10 96101465 96101465 G A NOC3L Silent p.L537L 0.40 TCGA-E9-A1RH-01 12 107002600 107002600 C G RFX4 Missense_Mutation p.N32K 0.14 deleterious_low_confidence(0.03) benign(0.045) TCGA-E9-A1RH-01 12 133349744 133349744 C T GOLGA3 Missense_Mutation p.D1482N 0.21 tolerated_low_confidence(0.1) benign(0.012) TCGA-E9-A1RH-01 12 29669421 29669421 T G TMTC1 Splice_Site p.X724_splice 0.22 TCGA-E9-A1RH-01 12 49934726 49934726 C T KCNH3 Missense_Mutation p.P41S 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RH-01 12 58007413 58007413 A G ARHGEF25 Intron 0.27 TCGA-E9-A1RH-01 12 7531857 7531857 G A CD163L1 Silent p.S696S 0.26 TCGA-E9-A1RH-01 12 7867843 7867843 T C DPPA3 Silent p.S49S 0.12 TCGA-E9-A1RH-01 13 32698787 32698787 T C FRY Silent p.L202L 0.15 TCGA-E9-A1RH-01 13 61986915 61986918 AACC - PCDH20 Frame_Shift_Del p.V439Ifs*2 0.30 TCGA-E9-A1RH-01 13 96293774 96293774 C A DZIP1 Silent p.A124A 0.42 TCGA-E9-A1RH-01 14 105715692 105715692 C A BTBD6 Intron 0.10 TCGA-E9-A1RH-01 14 24534925 24534925 G T LRRC16B Missense_Mutation p.R1164I 0.20 tolerated(0.08) unknown(0) TCGA-E9-A1RH-01 14 67147848 67147848 C A GPHN Missense_Mutation p.L30I 0.17 tolerated(0.07) probably_damaging(0.962) TCGA-E9-A1RH-01 14 70252848 70252848 G T SLC10A1 Missense_Mutation p.S178Y 0.18 tolerated(0.6) benign(0.026) TCGA-E9-A1RH-01 14 70989500 70989500 C A ADAM20 Missense_Mutation p.A709S 0.16 tolerated(0.65) benign(0.053) TCGA-E9-A1RH-01 14 89093241 89093241 G A EML5 Silent p.L1561L 0.10 TCGA-E9-A1RH-01 15 101718183 101718183 C G CHSY1 Missense_Mutation p.E607Q 0.16 tolerated(0.18) benign(0.139) TCGA-E9-A1RH-01 15 28479350 28479350 C G HERC2 Missense_Mutation p.D1362H 0.44 possibly_damaging(0.735) TCGA-E9-A1RH-01 15 64067208 64067208 T C HERC1 Silent p.P205P 0.38 TCGA-E9-A1RH-01 15 65689327 65689327 T A IGDCC4 Missense_Mutation p.D281V 0.20 deleterious(0.04) probably_damaging(0.978) TCGA-E9-A1RH-01 16 15457808 15457808 T C NPIPA5 Missense_Mutation p.H254R 0.08 tolerated(0.33) benign(0.044) TCGA-E9-A1RH-01 16 2236791 2236791 C G CASKIN1 Missense_Mutation p.G322A 0.32 probably_damaging(1) TCGA-E9-A1RH-01 17 19699015 19699015 G A ULK2 Missense_Mutation p.S674L 0.20 deleterious(0) probably_damaging(0.997) TCGA-E9-A1RH-01 17 39215964 39215964 G A KRTAP2-3 Silent p.C113C 0.12 TCGA-E9-A1RH-01 17 44087762 44087762 C T MAPT Silent p.G638G 0.40 TCGA-E9-A1RH-01 17 556562 556562 C T VPS53 Missense_Mutation p.G193R 0.13 tolerated(0.17) benign(0.397) TCGA-E9-A1RH-01 17 7144763 7144763 G A GABARAP Silent p.F62F 0.27 TCGA-E9-A1RH-01 17 73560486 73560486 C T LLGL2 Missense_Mutation p.R312C 0.07 deleterious(0) probably_damaging(1) TCGA-E9-A1RH-01 17 73657754 73657754 C G RECQL5 Missense_Mutation p.R269T 0.29 deleterious(0) probably_damaging(0.996) TCGA-E9-A1RH-01 17 7574012 7574012 C - TP53 Frame_Shift_Del p.E339Rfs*6 0.41 TCGA-E9-A1RH-01 18 34298167 34298167 C T FHOD3 Missense_Mutation p.P794L 0.38 tolerated(0.28) benign(0.152) TCGA-E9-A1RH-01 19 15073025 15073025 G A SLC1A6 Missense_Mutation p.R242W 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-E9-A1RH-01 19 15341821 15341821 C A EPHX3 Missense_Mutation p.V190F 0.09 deleterious(0) possibly_damaging(0.706) TCGA-E9-A1RH-01 19 35614360 35614360 G C FXYD3 Nonstop_Mutation p.*145Sext*1 0.34 TCGA-E9-A1RH-01 19 40384135 40384135 C A FCGBP Missense_Mutation p.V3159F 0.04 possibly_damaging(0.727) TCGA-E9-A1RH-01 19 58199270 58199270 C T ZNF551 Missense_Mutation p.R543C 0.66 tolerated(0.19) benign(0.002) TCGA-E9-A1RH-01 19 58320257 58320257 C T ZNF552 Silent p.G125G 0.04 TCGA-E9-A1RH-01 1 149943095 149943095 C A OTUD7B Missense_Mutation p.S57I 0.15 deleterious(0.01) benign(0.046) TCGA-E9-A1RH-01 1 152129314 152129314 A C RPTN Missense_Mutation p.H87Q 0.14 tolerated(0.11) benign(0.017) TCGA-E9-A1RH-01 1 155449169 155449171 AGG - ASH1L In_Frame_Del p.P1164del 0.20 TCGA-E9-A1RH-01 1 171526725 171526725 C T PRRC2C Missense_Mutation p.T1823I 0.16 unknown(0) TCGA-E9-A1RH-01 1 182525194 182525194 C A RGSL1 3'UTR 0.24 TCGA-E9-A1RH-01 1 213145986 213145986 G T VASH2 Nonsense_Mutation p.G144* 0.15 TCGA-E9-A1RH-01 1 43232956 43232956 A T C1orf50 5'UTR 0.36 TCGA-E9-A1RH-01 1 90152030 90152030 A G LRRC8C Intron 0.18 TCGA-E9-A1RH-01 20 23065078 23065078 G C CD93 Missense_Mutation p.F584L 0.12 deleterious(0.01) possibly_damaging(0.808) TCGA-E9-A1RH-01 20 35154418 35154418 G A DLGAP4 Intron 0.09 TCGA-E9-A1RH-01 20 35651051 35651051 A G RBL1 Splice_Site p.X853_splice 0.16 TCGA-E9-A1RH-01 20 35651053 35651053 C G RBL1 Missense_Mutation p.K853N 0.16 deleterious(0) possibly_damaging(0.788) TCGA-E9-A1RH-01 20 60706418 60706418 A T LSM14B Missense_Mutation p.K281M 0.12 deleterious(0) probably_damaging(0.94) TCGA-E9-A1RH-01 20 61522187 61522187 G A DIDO1 Intron 0.11 TCGA-E9-A1RH-01 21 45725274 45725274 C T PFKL Intron 0.41 TCGA-E9-A1RH-01 22 19121847 19121847 C T DGCR14 Silent p.P431P 0.10 TCGA-E9-A1RH-01 22 36541561 36541561 C T APOL3 Missense_Mutation p.E104K 0.15 tolerated(0.19) probably_damaging(0.989) TCGA-E9-A1RH-01 2 101650049 101650049 A - TBC1D8 Frame_Shift_Del p.L577* 0.24 TCGA-E9-A1RH-01 2 133541010 133541010 G A NCKAP5 Missense_Mutation p.A1125V 0.11 tolerated(0.49) benign(0.001) TCGA-E9-A1RH-01 2 144728217 144728217 T C GTDC1 Intron 0.48 TCGA-E9-A1RH-01 2 170780651 170780651 A C UBR3 Missense_Mutation p.M664L 0.36 tolerated(0.51) benign(0.358) TCGA-E9-A1RH-01 2 179469856 179469856 T C TTN Missense_Mutation p.I18016M 0.09 TCGA-E9-A1RH-01 2 179499514 179499514 G T TTN Missense_Mutation p.D14029E 0.36 TCGA-E9-A1RH-01 2 201790582 201790582 C T ORC2 Nonsense_Mutation p.W375* 0.29 TCGA-E9-A1RH-01 2 219513520 219513520 C T ZNF142 Missense_Mutation p.E371K 0.19 tolerated(0.16) benign(0.11) TCGA-E9-A1RH-01 2 220083303 220083303 G T ABCB6 Silent p.L31L 0.21 TCGA-E9-A1RH-01 2 242437657 242437657 G A STK25 Missense_Mutation p.S342L 0.12 tolerated(0.3) benign(0.002) TCGA-E9-A1RH-01 2 44599983 44599983 C T CAMKMT Silent p.V89V 0.10 TCGA-E9-A1RH-01 3 113795785 113795785 C T QTRTD1 Missense_Mutation p.P260S 0.12 tolerated(0.09) possibly_damaging(0.797) TCGA-E9-A1RH-01 3 123051483 123051483 C T ADCY5 Silent p.A482A 0.16 TCGA-E9-A1RH-01 3 142430425 142430425 G A PLS1 Missense_Mutation p.R571K 0.10 tolerated(1) benign(0) TCGA-E9-A1RH-01 3 173999086 173999086 G C NLGN1 Missense_Mutation p.R822T 0.09 deleterious_low_confidence(0) benign(0.402) TCGA-E9-A1RH-01 3 178916920 178916925 GAACCA - PIK3CA In_Frame_Del p.E103_P104del 0.35 TCGA-E9-A1RH-01 3 178936049 178936049 C G PIK3CA Missense_Mutation p.L531V 0.07 deleterious(0.04) benign(0.442) TCGA-E9-A1RH-01 3 193355804 193355804 C T OPA1 Nonsense_Mutation p.R349* 0.12 TCGA-E9-A1RH-01 3 50392784 50392784 G A TMEM115 Missense_Mutation p.P349L 0.31 deleterious_low_confidence(0.03) benign(0.029) TCGA-E9-A1RH-01 3 58087962 58087962 C G FLNB Missense_Mutation p.R460G 0.23 deleterious(0.01) possibly_damaging(0.844) TCGA-E9-A1RH-01 3 8671361 8671361 C G SSUH2 Missense_Mutation p.G193R 0.79 deleterious(0) probably_damaging(0.997) TCGA-E9-A1RH-01 4 173961139 173961141 AGA - GALNTL6 In_Frame_Del p.K567del 0.23 TCGA-E9-A1RH-01 4 2896334 2896334 T C ADD1 Missense_Mutation p.I206T 0.06 deleterious(0.05) benign(0.209) TCGA-E9-A1RH-01 4 71471931 71471931 A G AMBN Silent p.G276G 0.27 TCGA-E9-A1RH-01 4 871498 871498 C G GAK Silent p.L587L 0.11 TCGA-E9-A1RH-01 4 90857362 90857362 T A MMRN1 Nonsense_Mutation p.L844* 0.28 TCGA-E9-A1RH-01 4 95239059 95239059 C A HPGDS Missense_Mutation p.S64I 0.25 deleterious(0) probably_damaging(1) TCGA-E9-A1RH-01 5 11082867 11082867 C A CTNND2 Missense_Mutation p.C910F 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-E9-A1RH-01 5 118500331 118500331 G A DMXL1 Nonsense_Mutation p.W1611* 0.23 TCGA-E9-A1RH-01 5 127474572 127474572 G T SLC12A2 Missense_Mutation p.L531F 0.16 tolerated(0.06) benign(0.028) TCGA-E9-A1RH-01 5 127474573 127474573 G A SLC12A2 Missense_Mutation p.V532I 0.16 tolerated(0.24) probably_damaging(0.942) TCGA-E9-A1RH-01 5 140553150 140553150 C G PCDHB7 Missense_Mutation p.S245W 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-E9-A1RH-01 5 5465079 5465079 G A KIAA0947 Missense_Mutation p.A1878T 0.13 tolerated(0.26) benign(0.007) TCGA-E9-A1RH-01 6 11190372 11190372 G A NEDD9 Missense_Mutation p.T577M 0.15 tolerated(0.06) benign(0.181) TCGA-E9-A1RH-01 6 165808702 165808702 G C PDE10A Silent p.V491V 0.09 TCGA-E9-A1RH-01 6 5109694 5109694 T C LYRM4 Missense_Mutation p.S40G 0.24 deleterious_low_confidence(0) benign(0.159) TCGA-E9-A1RH-01 6 57006766 57006766 C T ZNF451 Missense_Mutation p.P293S 0.09 deleterious(0) probably_damaging(0.962) TCGA-E9-A1RH-01 7 105893543 105893543 G A NAMPT Nonsense_Mutation p.R429* 0.11 TCGA-E9-A1RH-01 7 141537868 141537868 G A PRSS37 Silent p.D74D 0.18 TCGA-E9-A1RH-01 7 149559197 149559197 G T ZNF862 Missense_Mutation p.G983V 0.44 deleterious(0.02) possibly_damaging(0.873) TCGA-E9-A1RH-01 7 38305276 38305276 T G TRGC1 Missense_Mutation p.K2T 0.16 deleterious(0) probably_damaging(0.916) TCGA-E9-A1RH-01 7 94540269 94540269 G C PPP1R9A Missense_Mutation p.V282L 0.14 tolerated(0.25) benign(0.008) TCGA-E9-A1RH-01 8 133051351 133051351 C G OC90 Missense_Mutation p.E159D 0.10 deleterious(0.01) possibly_damaging(0.716) TCGA-E9-A1RH-01 8 141756921 141756921 G C PTK2 Missense_Mutation p.L486V 0.16 deleterious(0) probably_damaging(0.98) TCGA-E9-A1RH-01 8 23114072 23114072 C T CHMP7 Missense_Mutation p.R253C 0.26 deleterious(0.02) possibly_damaging(0.823) TCGA-E9-A1RH-01 8 52336261 52336285 ATTTACCACTCTCAGTAATCTGCAC - PXDNL Frame_Shift_Del p.V549Sfs*9 0.20 TCGA-E9-A1RH-01 8 67546842 67546842 G A VCPIP1 Missense_Mutation p.A1188V 0.14 tolerated_low_confidence(0.08) benign(0.007) TCGA-E9-A1RH-01 8 86573410 86573410 G A REXO1L1P 3'UTR 0.44 TCGA-E9-A1RH-01 8 87153720 87153720 G T ATP6V0D2 Nonsense_Mutation p.E175* 0.24 TCGA-E9-A1RH-01 9 101052788 101052788 G A GABBR2 3'UTR 0.45 TCGA-E9-A1RH-01 9 125652667 125652667 C T RC3H2 Silent p.Q169Q 0.48 TCGA-E9-A1RH-01 9 37422820 37422820 C T GRHPR Missense_Mutation p.R25W 0.33 deleterious(0) possibly_damaging(0.567) TCGA-E9-A1RH-01 9 5066750 5066750 T G JAK2 Silent p.P429P 0.18 TCGA-E9-A1RH-01 X 105279167 105279167 C G SERPINA7 Missense_Mutation p.E278Q 0.05 deleterious(0.04) benign(0.396) TCGA-E9-A1RH-01 X 20069029 20069029 G C MAP7D2 Missense_Mutation p.L211V 0.46 tolerated(0.86) possibly_damaging(0.73) TCGA-E9-A1RH-01 X 47045972 47045972 G A RBM10 Missense_Mutation p.V923M 0.17 tolerated(0.15) benign(0.026) TCGA-E9-A1RH-01 X 53247464 53247464 G A KDM5C Silent p.L115L 0.14 TCGA-E9-A1RH-01 X 80370589 80370589 A C HMGN5 Missense_Mutation p.D136E 0.09 tolerated(0.37) unknown(0) TCGA-E9-A1RI-01 11 6452352 6452352 G A HPX 3'UTR 0.53 TCGA-E9-A1RI-01 13 20625633 20625633 G A ZMYM2 Missense_Mutation p.G785R 0.14 deleterious(0) possibly_damaging(0.789) TCGA-E9-A1RI-01 14 64194161 64194161 C G SGPP1 Missense_Mutation p.V168L 0.15 deleterious(0) probably_damaging(0.976) TCGA-E9-A1RI-01 16 89178629 89178629 C T ACSF3 Missense_Mutation p.R318C 0.33 deleterious(0) probably_damaging(0.997) TCGA-E9-A1RI-01 17 26653645 26653645 G C TMEM97 Silent p.L119L 0.40 TCGA-E9-A1RI-01 19 11942664 11942664 G A ZNF440 Missense_Mutation p.E225K 0.07 tolerated(0.1) probably_damaging(0.956) TCGA-E9-A1RI-01 19 21933818 21933818 G A ZNF100 Intron 0.31 TCGA-E9-A1RI-01 19 54761154 54761154 C A LILRB5 5'Flank 0.44 TCGA-E9-A1RI-01 19 7997530 7997530 G A TIMM44 Silent p.I323I 0.21 TCGA-E9-A1RI-01 19 7997760 7997760 G A TIMM44 Missense_Mutation p.S276F 0.09 deleterious(0.01) possibly_damaging(0.746) TCGA-E9-A1RI-01 19 7997768 7997768 G A TIMM44 Silent p.I273I 0.10 TCGA-E9-A1RI-01 19 7999109 7999109 G A TIMM44 Silent p.V136V 0.20 TCGA-E9-A1RI-01 1 152277093 152277093 C T FLG Silent p.R3423R 0.24 TCGA-E9-A1RI-01 1 156263925 156263925 G A C1orf85 Missense_Mutation p.R228W 0.10 deleterious(0) possibly_damaging(0.828) TCGA-E9-A1RI-01 1 19549138 19549138 A T EMC1 Missense_Mutation p.I856N 0.14 deleterious(0) probably_damaging(1) TCGA-E9-A1RI-01 1 22835660 22835660 C A ZBTB40 Silent p.I589I 0.28 TCGA-E9-A1RI-01 22 18909913 18909914 - T PRODH Frame_Shift_Ins p.S285Kfs*12 0.30 TCGA-E9-A1RI-01 2 79350387 79350387 C T REG1A 3'UTR 0.21 TCGA-E9-A1RI-01 3 122060396 122060396 C T CSTA Silent p.D93D 0.21 TCGA-E9-A1RI-01 3 169487258 169487258 G T ACTRT3 Silent p.I17I 0.29 TCGA-E9-A1RI-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.26 tolerated(0.44) benign(0.085) TCGA-E9-A1RI-01 3 98251078 98251078 G A GPR15 Silent p.L67L 0.18 TCGA-E9-A1RI-01 4 82090921 82090921 A T PRKG2 Silent p.A248A 0.14 TCGA-E9-A1RI-01 6 132030507 132030507 G A CTAGE9 Missense_Mutation p.P551S 0.57 tolerated(0.06) possibly_damaging(0.523) TCGA-E9-A1RI-01 7 127963629 127963629 G A RBM28 Missense_Mutation p.T452M 0.29 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RI-01 8 3047537 3047537 G A CSMD1 Silent p.F1765F 0.08 TCGA-E9-A1RI-01 9 17466011 17466011 G T CNTLN Missense_Mutation p.K1188N 0.18 deleterious(0) probably_damaging(0.999) TCGA-E9-A1RI-01 9 27455217 27455217 G A MOB3B Missense_Mutation p.A111V 0.04 deleterious(0.05) benign(0.087) TCGA-E9-A1RI-01 X 118750576 118750576 T C SEPT6 3'Flank 0.35 TCGA-E9-A1RI-01 X 73961191 73961191 G T KIAA2022 Silent p.S1067S 0.18 TCGA-E9-A226-01 10 5005624 5005624 G A AKR1C1 5'UTR 0.29 TCGA-E9-A226-01 10 68857462 68857462 G C LRRTM3 Missense_Mutation p.D552H 0.12 deleterious_low_confidence(0.03) benign(0.121) TCGA-E9-A226-01 11 118255404 118255404 T G UBE4A Missense_Mutation p.I758S 0.20 deleterious(0) possibly_damaging(0.804) TCGA-E9-A226-01 11 124949049 124949049 C T SLC37A2 Missense_Mutation p.S119L 0.15 deleterious(0) benign(0.209) TCGA-E9-A226-01 11 7064785 7064785 G C NLRP14 Missense_Mutation p.D510H 0.07 tolerated(0.09) benign(0.035) TCGA-E9-A226-01 11 95561001 95561002 - T CEP57 Frame_Shift_Ins p.M314Nfs*6 0.36 TCGA-E9-A226-01 12 100795586 100795586 C A SLC17A8 Silent p.P236P 0.24 TCGA-E9-A226-01 12 112528605 112528605 C T NAA25 Missense_Mutation p.E70K 0.14 deleterious(0.01) possibly_damaging(0.905) TCGA-E9-A226-01 12 54105580 54105580 G A CALCOCO1 3'UTR 0.16 TCGA-E9-A226-01 12 6972518 6972518 C - USP5 Frame_Shift_Del p.P645Lfs*45 0.15 TCGA-E9-A226-01 12 85492272 85492272 T G LRRIQ1 Silent p.V1009V 0.10 TCGA-E9-A226-01 13 47470806 47470807 - A HTR2A 5'Flank 0.22 TCGA-E9-A226-01 13 96377450 96377450 C G DNAJC3 Missense_Mutation p.H113D 0.08 deleterious(0.02) benign(0.126) TCGA-E9-A226-01 14 50118020 50118020 A T POLE2 Silent p.R429R 0.44 TCGA-E9-A226-01 15 31359334 31359334 G A TRPM1 Missense_Mutation p.R201W 0.10 deleterious(0) probably_damaging(0.952) TCGA-E9-A226-01 15 84706463 84706463 G A ADAMTSL3 Missense_Mutation p.D1661N 0.07 tolerated(0.07) possibly_damaging(0.661) TCGA-E9-A226-01 15 90969467 90969470 AAAT - IQGAP1 Frame_Shift_Del p.K94Tfs*22 0.27 TCGA-E9-A226-01 16 27556682 27556682 T G GTF3C1 Missense_Mutation p.R128S 0.06 deleterious(0) possibly_damaging(0.662) TCGA-E9-A226-01 17 465966 465966 C T VPS53 Missense_Mutation p.D445N 0.21 tolerated(0.14) benign(0.149) TCGA-E9-A226-01 17 72948130 72948130 G A HID1 Missense_Mutation p.R725W 0.14 deleterious(0) possibly_damaging(0.817) TCGA-E9-A226-01 17 73566549 73566549 G A LLGL2 Silent p.R665R 0.22 TCGA-E9-A226-01 17 7578464 7578476 GGGTGCCGGGCGG - TP53 Frame_Shift_Del p.P152Afs*14 0.46 TCGA-E9-A226-01 19 13879795 13879795 G C MRI1 Missense_Mutation p.E294D 0.12 tolerated(0.98) benign(0.002) TCGA-E9-A226-01 19 15338906 15338906 A G EPHX3 Missense_Mutation p.S208P 0.19 tolerated(0.06) benign(0.003) TCGA-E9-A226-01 19 4324465 4324465 G C STAP2 Silent p.L424L 0.19 TCGA-E9-A226-01 19 48967521 48967521 C G KCNJ14 Missense_Mutation p.I266M 0.15 deleterious(0) probably_damaging(0.982) TCGA-E9-A226-01 19 50059664 50059664 G A NOSIP Silent p.L248L 0.21 TCGA-E9-A226-01 19 53643755 53643755 G A ZNF347 Nonsense_Mutation p.Q777* 0.11 TCGA-E9-A226-01 19 55019321 55019321 G A LAIR2 Missense_Mutation p.A96T 0.23 tolerated(0.06) possibly_damaging(0.893) TCGA-E9-A226-01 19 55964565 55964565 G A ISOC2 3'UTR 0.45 TCGA-E9-A226-01 1 111490845 111490845 C T LRIF1 Silent p.T682T 0.10 TCGA-E9-A226-01 1 183105559 183105559 G A LAMC1 Missense_Mutation p.E1385K 0.09 tolerated(0.33) possibly_damaging(0.51) TCGA-E9-A226-01 1 204172023 204172023 C T GOLT1A Splice_Site p.X39_splice 0.55 TCGA-E9-A226-01 1 220088901 220088901 C T SLC30A10 Missense_Mutation p.A450T 0.14 tolerated(1) benign(0) TCGA-E9-A226-01 1 230386263 230386263 G A GALNT2 Silent p.G322G 0.05 TCGA-E9-A226-01 1 235392694 235392694 T C ARID4B Missense_Mutation p.E250G 0.05 deleterious(0.01) benign(0.015) TCGA-E9-A226-01 1 242162122 242162122 C G MAP1LC3C Missense_Mutation p.E24Q 0.08 tolerated(0.1) benign(0.036) TCGA-E9-A226-01 1 243349262 243349262 C G CEP170 Missense_Mutation p.R462T 0.08 tolerated(0.18) possibly_damaging(0.597) TCGA-E9-A226-01 1 248436345 248436345 T A OR2T33 Missense_Mutation p.M258L 0.05 tolerated(0.14) benign(0.06) TCGA-E9-A226-01 21 45222219 45222219 G A RRP1 Silent p.Q358Q 0.16 TCGA-E9-A226-01 2 139316712 139316712 G T SPOPL Missense_Mutation p.D201Y 0.14 deleterious(0.01) probably_damaging(1) TCGA-E9-A226-01 2 175446104 175446104 C G WIPF1 Missense_Mutation p.D39H 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A226-01 2 179640219 179640219 G A TTN Silent p.I2124I 0.19 TCGA-E9-A226-01 2 183943684 183943684 T C DUSP19 Missense_Mutation p.I8T 0.27 deleterious(0) probably_damaging(0.954) TCGA-E9-A226-01 2 219900327 219900327 C G CCDC108 Missense_Mutation p.K139N 0.06 deleterious(0.01) benign(0.238) TCGA-E9-A226-01 2 238253836 238253836 G A COL6A3 Silent p.G2371G 0.17 TCGA-E9-A226-01 2 47184042 47184042 G A TTC7A Missense_Mutation p.R138Q 0.09 tolerated(0.26) benign(0.372) TCGA-E9-A226-01 2 71360245 71360245 G C MPHOSPH10 Missense_Mutation p.D103H 0.06 deleterious(0.03) possibly_damaging(0.879) TCGA-E9-A226-01 3 138191282 138191282 C G ESYT3 Missense_Mutation p.I606M 0.06 tolerated(0.08) possibly_damaging(0.682) TCGA-E9-A226-01 3 150911323 150911323 C T MED12L Missense_Mutation p.S672L 0.07 tolerated(0.49) benign(0.002) TCGA-E9-A226-01 3 151458594 151458594 C T AADACL2 Missense_Mutation p.S100L 0.04 tolerated(0.07) benign(0.016) TCGA-E9-A226-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.78 deleterious(0.01) probably_damaging(1) TCGA-E9-A226-01 3 179519747 179519747 G A PEX5L Missense_Mutation p.P584S 0.09 tolerated(0.79) benign(0.194) TCGA-E9-A226-01 3 186459996 186459996 C T KNG1 Missense_Mutation p.S604L 0.07 deleterious(0) possibly_damaging(0.518) TCGA-E9-A226-01 3 186460028 186460028 C G KNG1 Missense_Mutation p.P615A 0.10 deleterious(0) probably_damaging(0.998) TCGA-E9-A226-01 3 195505690 195505690 G A MUC4 Missense_Mutation p.S4254L 0.03 benign(0.279) TCGA-E9-A226-01 4 110745690 110745690 C G GAR1 3'UTR 0.11 TCGA-E9-A226-01 4 74735695 74735695 G A CXCL1 Silent p.K99K 0.11 TCGA-E9-A226-01 5 123982628 123982628 G A ZNF608 Missense_Mutation p.S1150L 0.14 tolerated(0.07) possibly_damaging(0.57) TCGA-E9-A226-01 5 139886472 139886472 C G ANKHD1 Missense_Mutation p.S1154C 0.06 unknown(0) TCGA-E9-A226-01 5 140725783 140725783 C T PCDHGA3 Missense_Mutation p.S728L 0.33 deleterious_low_confidence(0.04) benign(0.027) TCGA-E9-A226-01 5 158634544 158634544 G A RNF145 Intron 0.35 TCGA-E9-A226-01 5 6737672 6737672 G A PAPD7 Missense_Mutation p.E6K 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-E9-A226-01 6 119300652 119300652 G A FAM184A Missense_Mutation p.S778F 0.06 tolerated(0.54) possibly_damaging(0.894) TCGA-E9-A226-01 6 134491541 134491541 G A SGK1 Silent p.P482P 0.11 TCGA-E9-A226-01 6 151152648 151152648 C G PLEKHG1 Missense_Mutation p.Q801E 0.16 tolerated(0.11) benign(0.107) TCGA-E9-A226-01 6 151243426 151243426 C G MTHFD1L Missense_Mutation p.S357C 0.09 deleterious(0.05) benign(0.021) TCGA-E9-A226-01 6 26032071 26032071 C G HIST1H3B Missense_Mutation p.R73P 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-E9-A226-01 6 26197163 26197163 C T HIST1H3D Missense_Mutation p.E106K 0.09 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-E9-A226-01 6 75831137 75831137 C T COL12A1 Missense_Mutation p.D2323N 0.10 probably_damaging(0.999) TCGA-E9-A226-01 6 84872879 84872879 C T KIAA1009 Silent p.Q832Q 0.06 TCGA-E9-A226-01 7 103275906 103275906 C G RELN Missense_Mutation p.E811Q 0.08 tolerated(0.27) benign(0.168) TCGA-E9-A226-01 7 139097295 139097295 A G LUC7L2 Splice_Site p.X326_splice 0.40 TCGA-E9-A226-01 7 139724415 139724415 G A PARP12 Missense_Mutation p.S684L 0.07 tolerated_low_confidence(0.33) benign(0) TCGA-E9-A226-01 7 150027968 150027968 G T ZBED6CL Missense_Mutation p.A159S 0.19 tolerated(1) benign(0.005) TCGA-E9-A226-01 7 151859625 151859625 T - KMT2C Frame_Shift_Del p.E3679Dfs*2 0.34 TCGA-E9-A226-01 7 158734770 158734770 A G WDR60 Missense_Mutation p.N978S 0.42 tolerated(0.74) benign(0) TCGA-E9-A226-01 7 48004913 48004913 C G HUS1 3'UTR 0.07 TCGA-E9-A226-01 8 106815493 106815493 G C ZFPM2 Missense_Mutation p.E1061D 0.07 tolerated(0.17) benign(0.404) TCGA-E9-A226-01 8 135614282 135614282 C A ZFAT Silent p.V560V 0.50 TCGA-E9-A226-01 8 38693781 38693781 C T TACC1 Silent p.A605A 0.14 TCGA-E9-A226-01 8 67716646 67716646 C A SGK3 Missense_Mutation p.P73T 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A226-01 9 136653482 136653482 G C VAV2 Silent p.V467V 0.10 TCGA-E9-A226-01 9 19032889 19032889 G A FAM154A Silent p.I6I 0.14 TCGA-E9-A226-01 X 150912869 150912869 C T CNGA2 Missense_Mutation p.R632C 0.18 deleterious(0) probably_damaging(0.999) TCGA-E9-A227-01 10 70097823 70097823 T G HNRNPH3 Intron 0.53 TCGA-E9-A227-01 11 57472466 57472467 - C MED19 Frame_Shift_Ins p.F152Lfs*25 0.31 TCGA-E9-A227-01 12 31269352 31269352 G - RP11-551L14.1 RNA 0.18 TCGA-E9-A227-01 13 75884201 75884201 C T TBC1D4 Missense_Mutation p.E824K 0.25 tolerated(0.65) benign(0.013) TCGA-E9-A227-01 15 25966903 25966903 G C ATP10A Missense_Mutation p.Q422E 0.24 tolerated(0.08) benign(0.21) TCGA-E9-A227-01 15 64005094 64005094 C - HERC1 Frame_Shift_Del p.S1489Vfs*10 0.19 TCGA-E9-A227-01 16 30667597 30667597 G A PRR14 Missense_Mutation p.E575K 0.21 deleterious(0.01) benign(0.183) TCGA-E9-A227-01 16 67645934 67645934 C G CTCF Missense_Mutation p.H288D 0.42 deleterious(0) probably_damaging(1) TCGA-E9-A227-01 17 45750492 45750492 G T KPNB1 Missense_Mutation p.L552F 0.07 tolerated(0.08) benign(0.118) TCGA-E9-A227-01 17 60865932 60865932 C T MARCH10 Missense_Mutation p.R40K 0.28 tolerated(0.33) benign(0.015) TCGA-E9-A227-01 17 62019336 62019336 G C SCN4A Missense_Mutation p.L1436V 0.25 tolerated(0.32) benign(0.171) TCGA-E9-A227-01 17 7708590 7708590 G C DNAH2 Missense_Mutation p.K3107N 0.24 probably_damaging(1) TCGA-E9-A227-01 17 79152856 79152856 G A AATK-AS1 RNA 0.18 TCGA-E9-A227-01 19 12075882 12075882 C T ZNF763 5'UTR 0.30 TCGA-E9-A227-01 1 110714774 110714774 G T SLC6A17 Missense_Mutation p.G127C 0.09 deleterious(0) probably_damaging(1) TCGA-E9-A227-01 1 120458435 120458436 - G NOTCH2 Frame_Shift_Ins p.I2304Hfs*9 0.26 TCGA-E9-A227-01 2 71654376 71654376 G C ZNF638 Missense_Mutation p.E1793Q 0.24 deleterious(0.04) possibly_damaging(0.701) TCGA-E9-A227-01 2 71654453 71654453 G A ZNF638 Silent p.K1818K 0.22 TCGA-E9-A227-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-E9-A227-01 5 89948176 89948176 C T GPR98 Nonsense_Mutation p.R1144* 0.26 TCGA-E9-A227-01 6 139222082 139222082 C T ECT2L Intron 0.25 TCGA-E9-A227-01 9 139889217 139889217 C T CLIC3 Silent p.A209A 0.37 TCGA-E9-A227-01 X 80371790 80371790 G T HMGN5 Silent p.A60A 0.05 TCGA-E9-A228-01 10 26822390 26822390 G A APBB1IP Missense_Mutation p.G279E 0.41 deleterious(0.05) benign(0.298) TCGA-E9-A228-01 10 70917832 70917832 G A VPS26A Missense_Mutation p.R139K 0.16 tolerated(0.29) benign(0.003) TCGA-E9-A228-01 11 64572092 64572093 - G MEN1 Frame_Shift_Ins p.R521Pfs*15 0.62 TCGA-E9-A228-01 11 77884923 77884923 C T KCTD21 Silent p.E226E 0.10 TCGA-E9-A228-01 12 125449009 125449009 C A DHX37 Missense_Mutation p.W659L 0.30 deleterious(0.01) probably_damaging(0.911) TCGA-E9-A228-01 12 80199488 80199488 C T PPP1R12A Silent p.T628T 0.27 TCGA-E9-A228-01 12 81111126 81111126 G A MYF5 Missense_Mutation p.R95H 0.44 deleterious(0) probably_damaging(1) TCGA-E9-A228-01 14 106174399 106174399 G T IGHA1 Missense_Mutation p.H130Q 0.40 tolerated(0.8) benign(0.016) TCGA-E9-A228-01 14 21963403 21963403 C T TOX4 Nonsense_Mutation p.Q553* 0.33 TCGA-E9-A228-01 14 25288273 25288273 G A STXBP6 Silent p.S193S 0.25 TCGA-E9-A228-01 14 55310596 55310596 A G GCH1 3'UTR 0.18 TCGA-E9-A228-01 14 74156135 74156135 A G DNAL1 Missense_Mutation p.N150S 0.25 deleterious(0) probably_damaging(1) TCGA-E9-A228-01 15 65114690 65114690 G A PIF1 Silent p.F226F 0.23 TCGA-E9-A228-01 15 78783006 78783006 T G IREB2 Missense_Mutation p.L743V 0.12 deleterious(0.02) probably_damaging(0.985) TCGA-E9-A228-01 16 22152977 22152977 C T VWA3A Missense_Mutation p.L820F 0.26 tolerated(0.26) benign(0.005) TCGA-E9-A228-01 16 845711 845711 G C CHTF18 Missense_Mutation p.R734S 0.38 tolerated(0.06) benign(0.055) TCGA-E9-A228-01 17 57126638 57126638 G T TRIM37 Nonsense_Mutation p.C477* 0.26 TCGA-E9-A228-01 17 59871074 59871074 C T BRIP1 Missense_Mutation p.A453T 0.36 tolerated(0.11) benign(0) TCGA-E9-A228-01 17 61788157 61788157 T C STRADA Missense_Mutation p.I130V 0.30 tolerated(0.12) benign(0.371) TCGA-E9-A228-01 18 76754213 76754213 G A SALL3 Missense_Mutation p.C741Y 0.56 deleterious(0) probably_damaging(1) TCGA-E9-A228-01 19 10689625 10689625 G C AP1M2 Missense_Mutation p.I277M 0.26 deleterious(0.01) probably_damaging(0.93) TCGA-E9-A228-01 19 11143994 11143994 G A SMARCA4 Missense_Mutation p.R1192H 0.21 probably_damaging(1) TCGA-E9-A228-01 19 37134740 37134740 T C ZNF461 Missense_Mutation p.H86R 0.27 tolerated(0.66) unknown(0) TCGA-E9-A228-01 19 9070657 9070657 C T MUC16 Missense_Mutation p.V5597M 0.36 unknown(0) TCGA-E9-A228-01 1 10709343 10709343 C T CASZ1 Missense_Mutation p.R1011H 0.40 deleterious(0.02) possibly_damaging(0.796) TCGA-E9-A228-01 1 110168296 110168296 C T AMPD2 Missense_Mutation p.R133C 0.38 deleterious(0.02) possibly_damaging(0.852) TCGA-E9-A228-01 1 11294317 11294317 C G MTOR Missense_Mutation p.L738F 0.28 deleterious(0) possibly_damaging(0.897) TCGA-E9-A228-01 1 114414252 114414252 G C PTPN22 5'UTR 0.48 TCGA-E9-A228-01 1 169279296 169279296 C T NME7 Missense_Mutation p.D101N 0.46 deleterious(0.04) benign(0.223) TCGA-E9-A228-01 1 234041449 234041449 G A SLC35F3 Silent p.R76R 0.44 TCGA-E9-A228-01 1 236156947 236156947 G A NID1 Missense_Mutation p.P918L 0.50 tolerated(0.27) benign(0.079) TCGA-E9-A228-01 1 45966014 45966014 A C MMACHC Missense_Mutation p.K4Q 0.04 tolerated(0.85) benign(0) TCGA-E9-A228-01 20 35443721 35443721 C A SOGA1 Missense_Mutation p.K708N 0.15 deleterious(0.04) probably_damaging(0.962) TCGA-E9-A228-01 21 34014274 34014274 G A SYNJ1 Missense_Mutation p.R1213C 0.41 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-E9-A228-01 2 73249692 73249692 G C SFXN5 Missense_Mutation p.P97R 0.34 deleterious(0) probably_damaging(0.991) TCGA-E9-A228-01 3 133666200 133666200 G A SLCO2A1 Missense_Mutation p.R399C 0.06 tolerated(0.08) probably_damaging(1) TCGA-E9-A228-01 3 13669372 13669372 G A FBLN2 Silent p.P824P 0.36 TCGA-E9-A228-01 3 182566341 182566341 G C ATP11B Missense_Mutation p.E283Q 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-E9-A228-01 3 50404847 50404847 G A CACNA2D2 Silent p.V800V 0.39 TCGA-E9-A228-01 4 139981717 139981717 G T ELF2 Silent p.T294T 0.39 TCGA-E9-A228-01 5 122506701 122506701 G A PRDM6 Silent p.S465S 0.53 TCGA-E9-A228-01 5 140725490 140725490 A C PCDHGA3 Silent p.R630R 0.11 TCGA-E9-A228-01 5 150509044 150509044 C T ANXA6 Missense_Mutation p.R281H 0.09 deleterious(0) probably_damaging(1) TCGA-E9-A228-01 5 55094277 55094277 C T DDX4 Missense_Mutation p.S498L 0.27 tolerated(0.1) benign(0.001) TCGA-E9-A228-01 6 167754327 167754327 A T TTLL2 Missense_Mutation p.K313N 0.65 deleterious(0) probably_damaging(0.964) TCGA-E9-A228-01 6 90411765 90411765 G A MDN1 Missense_Mutation p.R2722W 0.38 benign(0.007) TCGA-E9-A228-01 7 26224525 26224525 T A NFE2L3 Missense_Mutation p.F403I 0.28 deleterious(0) possibly_damaging(0.613) TCGA-E9-A228-01 8 139255303 139255303 C T FAM135B Missense_Mutation p.R184H 0.22 deleterious(0) possibly_damaging(0.775) TCGA-E9-A228-01 8 80677525 80677525 G A HEY1 Silent p.F275F 0.35 TCGA-E9-A228-01 9 139354518 139354518 G A SEC16A Silent p.S1683S 0.06 TCGA-E9-A228-01 9 35162278 35162278 G T UNC13B 5'UTR 0.45 TCGA-E9-A228-01 X 135053263 135053263 G A MMGT1 Missense_Mutation p.S29F 0.11 deleterious(0) probably_damaging(0.912) TCGA-E9-A228-01 X 54112160 54112160 G A FAM120C Missense_Mutation p.R943W 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A229-01 11 124794753 124794753 G A HEPACAM Nonsense_Mutation p.R100* 0.37 TCGA-E9-A229-01 11 3803284 3803284 T C NUP98 Missense_Mutation p.T22A 0.28 tolerated(0.5) unknown(0) TCGA-E9-A229-01 11 49214347 49214347 C T FOLH1 Missense_Mutation p.E171K 0.07 tolerated(0.06) possibly_damaging(0.696) TCGA-E9-A229-01 11 61120579 61120579 G C CYB561A3 Silent p.P159P 0.28 TCGA-E9-A229-01 11 63525654 63525654 C T RTN3 Missense_Mutation p.A1027V 0.17 tolerated(0.16) benign(0.263) TCGA-E9-A229-01 12 10374470 10374470 G C GABARAPL1 3'UTR 0.30 TCGA-E9-A229-01 12 10374572 10374572 G T GABARAPL1 3'UTR 0.38 TCGA-E9-A229-01 12 57648560 57648560 T A R3HDM2 Missense_Mutation p.Q976L 0.07 deleterious(0) probably_damaging(0.978) TCGA-E9-A229-01 12 57863448 57863448 C T GLI1 Missense_Mutation p.R515W 0.47 deleterious(0) probably_damaging(0.998) TCGA-E9-A229-01 14 39584053 39584053 C T GEMIN2 Missense_Mutation p.P64L 0.30 deleterious(0) probably_damaging(0.997) TCGA-E9-A229-01 14 59930739 59930739 G A GPR135 Silent p.R402R 0.15 TCGA-E9-A229-01 16 11362818 11362818 C T TNP2 Missense_Mutation p.R101H 0.30 deleterious(0) benign(0) TCGA-E9-A229-01 16 19556523 19556523 C G CCP110 Silent p.L898L 0.22 TCGA-E9-A229-01 16 4558116 4558116 C T HMOX2 Missense_Mutation p.R203W 0.09 deleterious(0) probably_damaging(0.999) TCGA-E9-A229-01 17 7496417 7496417 C T FXR2 Silent p.R471R 0.29 TCGA-E9-A229-01 18 43579418 43579418 G A PSTPIP2 Missense_Mutation p.P167L 0.24 tolerated(0.29) benign(0.001) TCGA-E9-A229-01 19 46376175 46376175 C T FOXA3 Silent p.F304F 0.29 TCGA-E9-A229-01 1 158583566 158583566 C A SPTA1 Nonsense_Mutation p.E2312* 0.28 TCGA-E9-A229-01 1 168550428 168550440 GACCAATACAGCT - XCL1 Frame_Shift_Del p.T106* 0.31 TCGA-E9-A229-01 1 45974548 45974548 G A MMACHC Silent p.E170E 0.25 TCGA-E9-A229-01 20 55021046 55021046 G A CASS4 Missense_Mutation p.V184M 0.66 tolerated(0.23) benign(0) TCGA-E9-A229-01 2 113420645 113420645 T G SLC20A1 3'UTR 0.15 TCGA-E9-A229-01 2 153575506 153575508 TCC - ARL6IP6 In_Frame_Del p.L125del 0.46 TCGA-E9-A229-01 2 17907681 17907681 G C SMC6 Missense_Mutation p.S200C 0.03 deleterious(0.02) possibly_damaging(0.654) TCGA-E9-A229-01 2 179213982 179213982 G A OSBPL6 Missense_Mutation p.R365H 0.22 tolerated(0.07) probably_damaging(0.979) TCGA-E9-A229-01 2 37306265 37306265 T C HEATR5B Silent p.K112K 0.27 TCGA-E9-A229-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.17 tolerated(0.11) possibly_damaging(0.529) TCGA-E9-A229-01 4 128804491 128804491 G A PLK4 Silent p.L67L 0.32 TCGA-E9-A229-01 5 98240749 98240749 G C CHD1 Missense_Mutation p.S36C 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-E9-A229-01 7 26248161 26248165 AAGAA - CBX3 Frame_Shift_Del p.K107Rfs*4 0.21 TCGA-E9-A229-01 8 42234603 42234603 C T DKK4 5'UTR 0.38 TCGA-E9-A229-01 8 86572640 86572640 C G REXO1L1P 3'UTR 0.18 TCGA-E9-A229-01 9 136531950 136531950 G T SARDH Silent p.G846G 0.26 TCGA-E9-A22A-01 10 16967642 16967642 C T CUBN Missense_Mutation p.E2135K 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-E9-A22A-01 11 11470443 11470443 G T GALNT18 Missense_Mutation p.F92L 0.24 tolerated(0.19) benign(0.001) TCGA-E9-A22A-01 11 123909447 123909447 C T OR10G7 Missense_Mutation p.G88S 0.12 tolerated(0.66) benign(0.171) TCGA-E9-A22A-01 11 57569469 57569469 C G CTNND1 Silent p.L407L 0.12 TCGA-E9-A22A-01 11 96117385 96117387 TCT - CCDC82 In_Frame_Del p.E175del 0.18 TCGA-E9-A22A-01 12 117962830 117962830 G A KSR2 Silent p.H682H 0.12 TCGA-E9-A22A-01 13 73320690 73320690 C T BORA Missense_Mutation p.S308F 0.21 tolerated(0.13) possibly_damaging(0.557) TCGA-E9-A22A-01 15 62202485 62202485 T A VPS13C Missense_Mutation p.E2912V 0.25 deleterious(0.02) probably_damaging(1) TCGA-E9-A22A-01 15 79748798 79748798 G A KIAA1024 Silent p.E103E 0.11 TCGA-E9-A22A-01 16 2263881 2263896 AGGTGGCGCCTAGGAG - PGP Frame_Shift_Del p.L267Vfs*3 0.14 TCGA-E9-A22A-01 16 27517273 27517273 T A GTF3C1 Missense_Mutation p.S573C 0.14 deleterious(0.03) possibly_damaging(0.711) TCGA-E9-A22A-01 16 46764603 46764603 A G MYLK3 Silent p.S490S 0.23 TCGA-E9-A22A-01 17 43906978 43906978 G T CRHR1 Silent p.G162G 0.10 TCGA-E9-A22A-01 18 21033284 21033284 C T RIOK3 5'UTR 0.22 TCGA-E9-A22A-01 19 21365903 21365903 G C ZNF431 Missense_Mutation p.G266A 0.32 deleterious(0) probably_damaging(0.999) TCGA-E9-A22A-01 1 186648296 186648296 G A PTGS2 Silent p.P69P 0.12 TCGA-E9-A22A-01 1 197009842 197009842 C T F13B Missense_Mutation p.E588K 0.11 deleterious(0.04) benign(0.049) TCGA-E9-A22A-01 1 207195445 207195445 C A C1orf116 Missense_Mutation p.S555I 0.14 deleterious(0.01) possibly_damaging(0.637) TCGA-E9-A22A-01 1 248263455 248263455 C T OR2L13 Missense_Mutation p.R260W 0.34 deleterious(0.02) benign(0.192) TCGA-E9-A22A-01 1 248487711 248487711 G A OR2M7 Nonsense_Mutation p.Q54* 0.18 TCGA-E9-A22A-01 1 40879755 40879755 G A SMAP2 Intron 0.17 TCGA-E9-A22A-01 1 47748020 47748020 C G STIL Missense_Mutation p.Q415H 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-E9-A22A-01 1 55075124 55075124 T C FAM151A Missense_Mutation p.I525M 0.29 tolerated(0.15) benign(0.012) TCGA-E9-A22A-01 20 35176478 35176478 G C MYL9 Missense_Mutation p.E76D 0.11 tolerated(0.06) benign(0) TCGA-E9-A22A-01 21 47931375 47931375 C G DIP2A Missense_Mutation p.T317R 0.28 deleterious(0) benign(0.237) TCGA-E9-A22A-01 22 45923887 45923887 C T FBLN1 Missense_Mutation p.T161M 0.22 tolerated(0.13) benign(0) TCGA-E9-A22A-01 2 11959665 11959665 A G LPIN1 Missense_Mutation p.K869E 0.22 deleterious(0.02) benign(0.382) TCGA-E9-A22A-01 3 170184915 170184915 C G SLC7A14 Missense_Mutation p.K748N 0.24 tolerated(0.1) benign(0.19) TCGA-E9-A22A-01 3 52544484 52544484 C A STAB1 Nonsense_Mutation p.C916* 0.21 TCGA-E9-A22A-01 4 114153390 114153390 G C ANK2 Missense_Mutation p.G153A 0.20 probably_damaging(0.984) TCGA-E9-A22A-01 7 32590994 32590994 T G AVL9 Missense_Mutation p.Y141D 0.15 deleterious(0) probably_damaging(0.998) TCGA-E9-A22A-01 7 4949608 4949608 C G MMD2 Missense_Mutation p.K171N 0.18 tolerated_low_confidence(0.5) benign(0) TCGA-E9-A22A-01 8 134147137 134147137 C T TG 3'UTR 0.20 TCGA-E9-A22A-01 8 145640174 145640174 T A SLC39A4 Missense_Mutation p.Q304L 0.48 tolerated(1) possibly_damaging(0.853) TCGA-E9-A22A-01 8 86572171 86572171 G T REXO1L1P 3'UTR 0.16 TCGA-E9-A22A-01 X 102004787 102004787 C T BHLHB9 Silent p.C288C 0.26 TCGA-E9-A22A-01 X 105450851 105450851 T G MUM1L1 Missense_Mutation p.Y476D 0.18 deleterious(0) probably_damaging(1) TCGA-E9-A22A-01 X 2876314 2876314 C G ARSE Splice_Site p.X62_splice 0.18 TCGA-E9-A22B-01 10 102763412 102763412 C T LZTS2 Missense_Mutation p.P186L 0.50 tolerated(0.12) benign(0.031) TCGA-E9-A22B-01 10 46121562 46121562 A G ZFAND4 Missense_Mutation p.L570P 0.41 deleterious(0) probably_damaging(0.959) TCGA-E9-A22B-01 10 6520982 6520982 G A PRKCQ Missense_Mutation p.T442M 0.25 deleterious(0) probably_damaging(0.989) TCGA-E9-A22B-01 11 5758318 5758318 T C OR56B1 Missense_Mutation p.L191P 0.37 deleterious(0.03) benign(0.108) TCGA-E9-A22B-01 11 59626616 59626616 C G TCN1 Missense_Mutation p.K227N 0.36 deleterious(0.04) probably_damaging(0.992) TCGA-E9-A22B-01 11 64496365 64496365 G A RASGRP2 Missense_Mutation p.R581C 0.16 deleterious(0.02) possibly_damaging(0.68) TCGA-E9-A22B-01 11 66083729 66083729 C T CD248 Missense_Mutation p.R257H 0.21 tolerated(0.2) benign(0.01) TCGA-E9-A22B-01 12 14798208 14798208 G A GUCY2C Silent p.F584F 0.28 TCGA-E9-A22B-01 12 41419093 41419093 T A CNTN1 Missense_Mutation p.C889S 0.15 tolerated(0.38) benign(0.041) TCGA-E9-A22B-01 12 6928608 6928608 C T CD4 3'UTR 0.23 TCGA-E9-A22B-01 12 6948564 6948564 G A LEPREL2 Missense_Mutation p.R716H 0.33 tolerated(0.22) benign(0.001) TCGA-E9-A22B-01 12 95445620 95445620 T G NR2C1 Missense_Mutation p.M295L 0.26 tolerated(1) benign(0) TCGA-E9-A22B-01 13 103418555 103418555 C A TEX30 3'UTR 0.67 TCGA-E9-A22B-01 14 20666089 20666089 G A OR11G2 Missense_Mutation p.V199I 0.20 tolerated(1) benign(0.006) TCGA-E9-A22B-01 14 33015002 33015002 G A AKAP6 Silent p.E381E 0.24 TCGA-E9-A22B-01 14 63174294 63174294 A G KCNH5 Missense_Mutation p.C967R 0.43 tolerated_low_confidence(0.26) benign(0.001) TCGA-E9-A22B-01 14 86089456 86089456 C T FLRT2 Missense_Mutation p.T533M 0.58 tolerated(0.11) benign(0.361) TCGA-E9-A22B-01 15 83826259 83826259 C T HDGFRP3 Missense_Mutation p.E123K 0.29 tolerated(0.09) possibly_damaging(0.573) TCGA-E9-A22B-01 15 85334047 85334047 C T ZNF592 Missense_Mutation p.R778C 0.27 deleterious(0) probably_damaging(0.999) TCGA-E9-A22B-01 16 2029885 2029885 G A NOXO1 Silent p.N207N 0.35 TCGA-E9-A22B-01 16 24560536 24560536 A T RBBP6 Intron 0.44 TCGA-E9-A22B-01 16 31391361 31391361 C T ITGAX Missense_Mutation p.A1012V 0.32 tolerated(0.08) benign(0) TCGA-E9-A22B-01 16 71798295 71798295 C T AP1G1 Silent p.T295T 0.16 TCGA-E9-A22B-01 17 60005327 60005327 G C INTS2 5'UTR 0.09 TCGA-E9-A22B-01 17 66511664 66511664 C T PRKAR1A Nonsense_Mutation p.R42* 0.27 TCGA-E9-A22B-01 18 28667707 28667707 C T DSC2 Missense_Mutation p.E234K 0.29 deleterious(0.01) probably_damaging(0.969) TCGA-E9-A22B-01 18 59895751 59895751 A T KIAA1468 Silent p.S456S 0.27 TCGA-E9-A22B-01 19 11664586 11664586 T A ELOF1 Missense_Mutation p.D76V 0.43 deleterious(0) probably_damaging(1) TCGA-E9-A22B-01 19 41596358 41596358 C A CYP2A13 Silent p.V181V 0.23 TCGA-E9-A22B-01 19 43372091 43372091 C T PSG1 3'UTR 0.38 TCGA-E9-A22B-01 19 46893331 46893331 C T PPP5C Missense_Mutation p.S460F 0.05 deleterious(0) possibly_damaging(0.537) TCGA-E9-A22B-01 19 50548272 50548272 T C ZNF473 Missense_Mutation p.F191S 0.07 tolerated(0.48) benign(0) TCGA-E9-A22B-01 19 53740447 53740447 T A ZNF677 Silent p.G511G 0.13 TCGA-E9-A22B-01 19 57132793 57132793 G C ZNF71 Missense_Mutation p.E46D 0.33 tolerated(0.07) benign(0) TCGA-E9-A22B-01 19 58017951 58017951 T C ZNF773 Missense_Mutation p.L163P 0.29 tolerated(0.14) benign(0.006) TCGA-E9-A22B-01 19 58862784 58862784 C T A1BG Missense_Mutation p.A295T 0.39 deleterious(0.04) benign(0.103) TCGA-E9-A22B-01 1 155261573 155261573 C T PKLR Missense_Mutation p.R531H 0.30 tolerated(0.29) benign(0.008) TCGA-E9-A22B-01 1 210948878 210948878 C T KCNH1 Missense_Mutation p.D642N 0.20 deleterious(0) probably_damaging(0.928) TCGA-E9-A22B-01 1 223715102 223715102 A T CAPN8 3'UTR 0.25 TCGA-E9-A22B-01 1 230313974 230313974 A G GALNT2 Missense_Mutation p.N46S 0.23 tolerated(0.41) benign(0.002) TCGA-E9-A22B-01 20 43940867 43940867 G A RBPJL Missense_Mutation p.G151S 0.29 tolerated(0.61) benign(0.084) TCGA-E9-A22B-01 20 44680441 44680441 C G SLC12A5 Missense_Mutation p.T793S 0.20 tolerated(0.07) benign(0.323) TCGA-E9-A22B-01 21 10951338 10951338 T G TPTE Missense_Mutation p.E125A 0.10 tolerated(0.48) benign(0.016) TCGA-E9-A22B-01 21 19169225 19169225 G A C21orf91 Missense_Mutation p.S113F 0.32 deleterious(0) probably_damaging(0.939) TCGA-E9-A22B-01 22 35789489 35789489 G A HMOX1 Silent p.G255G 0.38 TCGA-E9-A22B-01 2 137928463 137928463 G C THSD7B Missense_Mutation p.G560R 0.21 deleterious(0) probably_damaging(0.979) TCGA-E9-A22B-01 2 201718139 201718139 G T CLK1 Missense_Mutation p.R491S 0.35 tolerated(0.14) benign(0.019) TCGA-E9-A22B-01 2 201718142 201718142 C A CLK1 Nonsense_Mutation p.E490* 0.35 TCGA-E9-A22B-01 2 86292474 86292480 GTCCTCG - POLR1A Frame_Shift_Del p.R659Sfs*8 0.22 TCGA-E9-A22B-01 3 13364872 13364872 A C NUP210 Missense_Mutation p.F1569V 0.27 tolerated(0.55) benign(0.001) TCGA-E9-A22B-01 3 14548330 14548330 C T GRIP2 RNA 0.40 TCGA-E9-A22B-01 3 151134206 151134206 C T MED12L Missense_Mutation p.P2100L 0.47 tolerated_low_confidence(0.07) benign(0.025) TCGA-E9-A22B-01 3 38357875 38357875 A T SLC22A14 Silent p.T531T 0.20 TCGA-E9-A22B-01 3 48351420 48351420 T C SPINK8 Missense_Mutation p.I86V 0.17 tolerated(0.26) benign(0.003) TCGA-E9-A22B-01 4 145659170 145659170 A C HHIP 3'UTR 0.40 TCGA-E9-A22B-01 4 175224964 175224964 G C CEP44 Silent p.V116V 0.29 TCGA-E9-A22B-01 4 175598272 175598272 G A GLRA3 Missense_Mutation p.T295M 0.24 deleterious(0) probably_damaging(0.997) TCGA-E9-A22B-01 4 57182752 57182752 G A KIAA1211 Silent p.K1028K 0.33 TCGA-E9-A22B-01 5 33614429 33614429 T G ADAMTS12 Missense_Mutation p.K814T 0.27 deleterious(0) probably_damaging(0.963) TCGA-E9-A22B-01 6 131184781 131184781 G C EPB41L2 Missense_Mutation p.D969E 0.10 deleterious(0) probably_damaging(0.992) TCGA-E9-A22B-01 6 13977576 13977576 G A RNF182 Missense_Mutation p.D76N 0.39 deleterious(0.04) benign(0.024) TCGA-E9-A22B-01 6 143092186 143092186 G A HIVEP2 Silent p.F1230F 0.14 TCGA-E9-A22B-01 6 41658742 41658742 C T TFEB Silent p.L70L 0.23 TCGA-E9-A22B-01 6 64487930 64487930 C T EYS Missense_Mutation p.G2623R 0.28 deleterious(0) probably_damaging(0.998) TCGA-E9-A22B-01 7 105205897 105205897 A G RINT1 Missense_Mutation p.Y687C 0.23 deleterious(0) probably_damaging(0.997) TCGA-E9-A22B-01 7 112424725 112424725 T C TMEM168 Silent p.L52L 0.55 TCGA-E9-A22B-01 7 23213659 23213659 C T KLHL7 Silent p.Y501Y 0.14 TCGA-E9-A22B-01 7 31732036 31732036 C T PPP1R17 5'UTR 0.18 TCGA-E9-A22B-01 8 113988224 113988224 C T CSMD3 Missense_Mutation p.R395Q 0.19 tolerated_low_confidence(0.53) benign(0) TCGA-E9-A22B-01 8 67796162 67796162 C G MCMDC2 Missense_Mutation p.R336G 0.28 tolerated(0.38) benign(0.039) TCGA-E9-A22B-01 8 76476242 76476242 C G HNF4G Missense_Mutation p.Q417E 0.10 tolerated(0.54) benign(0.01) TCGA-E9-A22B-01 8 77765416 77765416 C A ZFHX4 Missense_Mutation p.Q2087K 0.12 probably_damaging(0.956) TCGA-E9-A22B-01 8 98673386 98673386 C A MTDH Missense_Mutation p.D156E 0.10 tolerated(0.83) benign(0.005) TCGA-E9-A22B-01 X 154743676 154743676 C T TMLHE Silent p.E203E 0.41 TCGA-E9-A22B-01 X 49034759 49034759 G T PRICKLE3 Nonsense_Mutation p.C210* 0.32 TCGA-E9-A22B-01 X 64754390 64754390 G A LAS1L Missense_Mutation p.A69V 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A22B-01 X 65417677 65417677 G A HEPH Missense_Mutation p.G606S 0.09 deleterious(0) probably_damaging(1) TCGA-E9-A22D-01 10 122618231 122618231 A G WDR11 Missense_Mutation p.N92S 0.33 tolerated(1) benign(0.002) TCGA-E9-A22D-01 10 8115874 8115875 - T GATA3 Frame_Shift_Ins p.P409Afs*99 0.14 TCGA-E9-A22D-01 11 123848282 123848282 G T OR10S1 Silent p.L39L 0.16 TCGA-E9-A22D-01 11 18231939 18231939 G A RP11-113D6.10 3'UTR 0.07 TCGA-E9-A22D-01 12 51467661 51467661 C T CSRNP2 Missense_Mutation p.R119Q 0.11 tolerated(0.05) probably_damaging(0.979) TCGA-E9-A22D-01 13 29275436 29275436 C T SLC46A3 Intron 0.24 TCGA-E9-A22D-01 13 29599235 29599235 A C MTUS2 Missense_Mutation p.S144R 0.08 deleterious(0.01) benign(0.414) TCGA-E9-A22D-01 16 21261658 21261658 C T ANKS4B Silent p.D257D 0.12 TCGA-E9-A22D-01 16 2335501 2335501 C A ABCA3 Missense_Mutation p.W1142L 0.27 deleterious(0) probably_damaging(0.999) TCGA-E9-A22D-01 17 10358322 10358322 G A MYH4 Missense_Mutation p.R791C 0.19 tolerated(0.06) benign(0.005) TCGA-E9-A22D-01 17 27049687 27049687 C T RPL23A Intron 0.20 TCGA-E9-A22D-01 17 38131251 38131251 C T GSDMA Silent p.F335F 0.07 TCGA-E9-A22D-01 17 39021184 39021184 G A KRT12 Silent p.G227G 0.07 TCGA-E9-A22D-01 17 7359169 7359169 G C CHRNB1 Missense_Mutation p.R425P 0.12 tolerated(0.3) benign(0.016) TCGA-E9-A22D-01 18 44560939 44560939 C G TCEB3B Missense_Mutation p.E233Q 0.17 deleterious(0.02) benign(0.14) TCGA-E9-A22D-01 19 56703240 56703240 G A ZSCAN5B Silent p.V189V 0.14 TCGA-E9-A22D-01 19 57328299 57328299 C T PEG3 Missense_Mutation p.R504H 0.24 tolerated(0.18) benign(0.02) TCGA-E9-A22D-01 1 156828526 156828526 G C INSRR 5'UTR 0.20 TCGA-E9-A22D-01 1 203467811 203467811 C T OPTC Silent p.L125L 0.06 TCGA-E9-A22D-01 1 203467848 203467848 C G OPTC Missense_Mutation p.S137C 0.06 deleterious(0) probably_damaging(0.996) TCGA-E9-A22D-01 1 21180162 21180162 G A EIF4G3 Missense_Mutation p.R1098W 0.05 deleterious(0) probably_damaging(1) TCGA-E9-A22D-01 1 236201489 236201489 G A NID1 Silent p.H400H 0.08 TCGA-E9-A22D-01 1 46655566 46655566 T C POMGNT1 Missense_Mutation p.E582G 0.06 benign(0.124) TCGA-E9-A22D-01 2 172582753 172582753 G A DYNC1I2 Missense_Mutation p.E274K 0.06 deleterious(0) benign(0.166) TCGA-E9-A22D-01 2 28521330 28521330 G A BRE Missense_Mutation p.D354N 0.14 tolerated(0.14) possibly_damaging(0.546) TCGA-E9-A22D-01 3 178560711 178560711 C T KCNMB2 Missense_Mutation p.R232W 0.34 deleterious(0) probably_damaging(0.913) TCGA-E9-A22D-01 3 39229655 39229655 C T XIRP1 Missense_Mutation p.A428T 0.29 tolerated(0.35) benign(0.009) TCGA-E9-A22D-01 3 46400009 46400009 C T CCR2 Intron 0.42 TCGA-E9-A22D-01 4 119951230 119951230 G A SYNPO2 Missense_Mutation p.E434K 0.05 deleterious(0.03) possibly_damaging(0.69) TCGA-E9-A22D-01 4 187005157 187005161 CATTT - TLR3 Frame_Shift_Del p.H773Lfs*20 0.37 TCGA-E9-A22D-01 4 37448092 37448092 C T KIAA1239 Silent p.I1494I 0.11 TCGA-E9-A22D-01 4 54319278 54319278 C T FIP1L1 Missense_Mutation p.P493S 0.14 deleterious(0) probably_damaging(0.993) TCGA-E9-A22D-01 6 100369132 100369132 C G MCHR2 Splice_Site p.X236_splice 0.06 TCGA-E9-A22D-01 6 75887458 75887458 C T COL12A1 Silent p.T786T 0.08 TCGA-E9-A22D-01 7 21698449 21698449 A G DNAH11 Missense_Mutation p.M1715V 0.16 benign(0.026) TCGA-E9-A22D-01 8 93017486 93017486 C T RUNX1T1 Missense_Mutation p.A211T 0.06 deleterious(0) probably_damaging(0.969) TCGA-E9-A22D-01 9 131848528 131848528 T G DOLPP1 Missense_Mutation p.F191C 0.30 deleterious(0) probably_damaging(0.998) TCGA-E9-A22D-01 9 140865850 140865850 G A CACNA1B Missense_Mutation p.R450H 0.11 deleterious(0.01) benign(0.144) TCGA-E9-A22D-01 9 39103829 39103829 G A CNTNAP3 Silent p.D816D 0.12 TCGA-E9-A22D-01 9 87285830 87285830 C T NTRK2 Missense_Mutation p.P56L 0.13 tolerated(0.1) probably_damaging(1) TCGA-E9-A22D-01 X 215818 215818 C T PLCXD1 Missense_Mutation p.A263V 0.16 tolerated(0.59) benign(0.004) TCGA-E9-A22D-01 X 67935135 67935135 G C STARD8 Splice_Site p.X51_splice 0.11 TCGA-E9-A22E-01 10 124380635 124380635 G C DMBT1 Missense_Mutation p.E1654Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-E9-A22E-01 10 30984945 30984945 G T SVILP1 RNA 0.20 TCGA-E9-A22E-01 10 3174581 3174581 G C PFKP Missense_Mutation p.E620Q 0.15 tolerated(0.22) benign(0.005) TCGA-E9-A22E-01 10 43607665 43607665 T C RET Silent p.D547D 0.45 TCGA-E9-A22E-01 10 61822913 61822913 C A ANK3 Missense_Mutation p.R4184I 0.29 probably_damaging(0.991) TCGA-E9-A22E-01 11 105962133 105962133 G C AASDHPPT Missense_Mutation p.D208H 0.17 deleterious(0.04) benign(0.172) TCGA-E9-A22E-01 11 113264435 113264435 C G ANKK1 Missense_Mutation p.P140A 0.14 deleterious(0.03) probably_damaging(0.933) TCGA-E9-A22E-01 11 113660393 113660394 TT - ATF4P4 RNA 0.58 TCGA-E9-A22E-01 11 126133861 126133861 G C SRPR Missense_Mutation p.L623V 0.22 deleterious(0) probably_damaging(1) TCGA-E9-A22E-01 11 57322087 57322087 G C UBE2L6 Missense_Mutation p.P45A 0.16 deleterious(0) probably_damaging(1) TCGA-E9-A22E-01 11 62984789 62984789 G C SLC22A25 Nonsense_Mutation p.S276* 0.09 TCGA-E9-A22E-01 11 63523641 63523644 AAGT - RTN3 Splice_Site p.X1018_splice 0.35 TCGA-E9-A22E-01 11 64882417 64882436 TGACGGGTTTGGCTTCATGC - TM7SF2 Frame_Shift_Del p.D253Gfs*61 0.19 TCGA-E9-A22E-01 11 7674471 7674471 G T PPFIBP2 3'UTR 0.33 TCGA-E9-A22E-01 12 100934544 100934544 G A NR1H4 Silent p.K352K 0.05 TCGA-E9-A22E-01 12 105760448 105760448 C G C12orf75 Missense_Mutation p.S54C 0.40 tolerated(0.06) unknown(0) TCGA-E9-A22E-01 12 51693051 51693051 C A BIN2 Missense_Mutation p.A180S 0.11 deleterious(0) probably_damaging(0.962) TCGA-E9-A22E-01 13 70535549 70535549 A G KLHL1 Silent p.Y236Y 0.13 TCGA-E9-A22E-01 14 105178852 105178852 G A INF2 Missense_Mutation p.V858M 0.26 tolerated(0.1) unknown(0) TCGA-E9-A22E-01 14 20502121 20502121 G A OR4K13 Missense_Mutation p.S266L 0.10 tolerated(0.76) benign(0.407) TCGA-E9-A22E-01 14 24572061 24572061 C A PCK2 Missense_Mutation p.P445H 0.24 deleterious(0) probably_damaging(1) TCGA-E9-A22E-01 14 39870905 39870905 G C FBXO33 Missense_Mutation p.P291A 0.10 tolerated(0.05) benign(0.058) TCGA-E9-A22E-01 14 52793971 52793971 A C PTGER2 Silent p.R292R 0.34 TCGA-E9-A22E-01 15 102346297 102346297 C T OR4F6 Silent p.A125A 0.10 TCGA-E9-A22E-01 15 33928672 33928672 G T RYR3 Missense_Mutation p.M1159I 0.19 benign(0.02) TCGA-E9-A22E-01 15 43890514 43890514 C G CKMT1B Missense_Mutation p.L334V 0.19 tolerated(0.5) benign(0.01) TCGA-E9-A22E-01 15 51988109 51988109 C G SCG3 Missense_Mutation p.I302M 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E9-A22E-01 15 74963815 74963815 G A EDC3 Silent p.F155F 0.09 TCGA-E9-A22E-01 15 78790455 78790455 A C IREB2 Missense_Mutation p.L954F 0.18 deleterious(0) benign(0.221) TCGA-E9-A22E-01 16 21288827 21288827 G A CRYM Silent p.R83R 0.46 TCGA-E9-A22E-01 16 23652816 23652816 C T DCTN5 5'UTR 0.07 TCGA-E9-A22E-01 16 30535889 30535889 C G ZNF768 Missense_Mutation p.Q524H 0.17 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-E9-A22E-01 16 71101180 71101180 T C HYDIN Intron 0.32 TCGA-E9-A22E-01 17 11597316 11597316 G T DNAH9 Splice_Site p.X1582_splice 0.50 TCGA-E9-A22E-01 17 16630877 16630877 G A CCDC144A Missense_Mutation p.C643Y 0.07 tolerated(0.52) benign(0.009) TCGA-E9-A22E-01 17 26658938 26658938 T A IFT20 Missense_Mutation p.E51V 0.43 deleterious(0.01) probably_damaging(0.956) TCGA-E9-A22E-01 17 29758839 29758839 A G RAB11FIP4 Silent p.K56K 0.19 TCGA-E9-A22E-01 17 46629656 46629656 C T HOXB3 Missense_Mutation p.A61T 0.62 tolerated(0.41) benign(0.001) TCGA-E9-A22E-01 17 48456042 48456042 G C EME1 Missense_Mutation p.Q330H 0.08 deleterious(0) probably_damaging(0.979) TCGA-E9-A22E-01 17 61666592 61666592 C T DCAF7 3'UTR 0.52 TCGA-E9-A22E-01 17 66253041 66253041 G T AMZ2 Silent p.P338P 0.41 TCGA-E9-A22E-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.63 deleterious(0) probably_damaging(1) TCGA-E9-A22E-01 17 77709390 77709390 C T ENPP7 Silent p.P316P 0.30 TCGA-E9-A22E-01 18 28992878 28992878 G A DSG4 Missense_Mutation p.V834I 0.24 tolerated(0.11) probably_damaging(0.987) TCGA-E9-A22E-01 18 29487548 29487548 G A TRAPPC8 Nonsense_Mutation p.Q422* 0.16 TCGA-E9-A22E-01 19 14165323 14165323 T A PALM3 Silent p.G372G 0.16 TCGA-E9-A22E-01 19 21299961 21299961 G C ZNF714 Missense_Mutation p.R164T 0.09 tolerated(0.07) benign(0.081) TCGA-E9-A22E-01 19 36018152 36018152 C G SBSN Missense_Mutation p.W344C 0.12 tolerated(0.16) benign(0) TCGA-E9-A22E-01 19 38610127 38610127 C T SIPA1L3 Missense_Mutation p.L825F 0.08 deleterious(0) probably_damaging(0.996) TCGA-E9-A22E-01 19 40580980 40580980 G C ZNF780A Missense_Mutation p.H458D 0.08 tolerated(0.37) benign(0.334) TCGA-E9-A22E-01 19 41736883 41736883 A G AXL Missense_Mutation p.T200A 0.25 tolerated(0.13) benign(0.085) TCGA-E9-A22E-01 19 46973170 46973170 C T PNMAL1 Missense_Mutation p.V375I 0.17 deleterious(0.01) benign(0.208) TCGA-E9-A22E-01 19 56244393 56244393 T A NLRP9 Missense_Mutation p.E268D 0.26 tolerated(0.13) benign(0.21) TCGA-E9-A22E-01 1 115593055 115593055 C G TSPAN2 3'UTR 0.09 TCGA-E9-A22E-01 1 118548125 118548125 C G SPAG17 Missense_Mutation p.R1563P 0.10 deleterious(0.02) possibly_damaging(0.652) TCGA-E9-A22E-01 1 155295002 155295002 A C RUSC1 Intron 0.19 TCGA-E9-A22E-01 1 157648560 157648560 T A FCRL3 Missense_Mutation p.E715D 0.13 tolerated(0.6) benign(0.064) TCGA-E9-A22E-01 1 157659609 157659609 C T FCRL3 Missense_Mutation p.A597T 0.07 tolerated(0.06) benign(0.126) TCGA-E9-A22E-01 1 161192829 161192829 G C APOA2 Missense_Mutation p.R22G 0.08 deleterious(0) probably_damaging(0.946) TCGA-E9-A22E-01 1 167787330 167787330 T A ADCY10 Missense_Mutation p.S1488C 0.17 tolerated(0.18) benign(0.009) TCGA-E9-A22E-01 1 17264148 17264148 G C CROCC Silent p.L402L 0.23 TCGA-E9-A22E-01 1 176838135 176838135 G A ASTN1 Silent p.F1164F 0.05 TCGA-E9-A22E-01 1 201030421 201030421 T A CACNA1S Nonsense_Mutation p.K1077* 0.09 TCGA-E9-A22E-01 1 20944945 20944945 T G CDA Missense_Mutation p.F109V 0.16 deleterious(0.03) possibly_damaging(0.791) TCGA-E9-A22E-01 1 228503630 228503630 G A OBSCN Silent p.Q5322Q 0.13 TCGA-E9-A22E-01 1 24075528 24075528 G A TCEB3 Silent p.K57K 0.15 TCGA-E9-A22E-01 1 248790034 248790034 C G OR2T11 Silent p.L132L 0.11 TCGA-E9-A22E-01 1 3319462 3319462 G A PRDM16 Missense_Mutation p.E262K 0.17 tolerated(0.14) benign(0.069) TCGA-E9-A22E-01 1 40960790 40960790 T A ZFP69 Missense_Mutation p.L214M 0.12 tolerated(0.14) benign(0.062) TCGA-E9-A22E-01 1 5923388 5923388 G C NPHP4 Missense_Mutation p.I1406M 0.11 deleterious(0) probably_damaging(0.988) TCGA-E9-A22E-01 1 60139743 60139743 T G FGGY Missense_Mutation p.S508A 0.06 tolerated(0.49) benign(0.254) TCGA-E9-A22E-01 1 75037611 75037611 T A C1orf173 Missense_Mutation p.Q1261H 0.12 tolerated(0.19) benign(0.346) TCGA-E9-A22E-01 1 89660995 89660995 C G GBP4 Silent p.L116L 0.18 TCGA-E9-A22E-01 1 9164512 9164512 G A GPR157 Missense_Mutation p.S325F 0.15 tolerated_low_confidence(0.08) benign(0.004) TCGA-E9-A22E-01 20 13699616 13699616 G C ESF1 Missense_Mutation p.S685W 0.27 deleterious(0) possibly_damaging(0.764) TCGA-E9-A22E-01 20 3543084 3543084 T C ATRN Missense_Mutation p.Y537H 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-E9-A22E-01 20 36935973 36935973 C A BPI Missense_Mutation p.S49R 0.31 tolerated(0.45) benign(0.086) TCGA-E9-A22E-01 20 44685909 44685909 G A SLC12A5 Missense_Mutation p.G1099R 0.13 deleterious(0.02) possibly_damaging(0.723) TCGA-E9-A22E-01 20 49232576 49232576 G A FAM65C Missense_Mutation p.S100F 0.11 deleterious(0.01) possibly_damaging(0.599) TCGA-E9-A22E-01 20 49620817 49620817 C A KCNG1 Missense_Mutation p.S434I 0.12 deleterious(0) probably_damaging(0.961) TCGA-E9-A22E-01 20 62152940 62152940 C T PPDPF Missense_Mutation p.P44L 0.33 deleterious(0.02) possibly_damaging(0.519) TCGA-E9-A22E-01 21 34117167 34117167 C G PAXBP1 Missense_Mutation p.G709A 0.12 tolerated(1) benign(0.003) TCGA-E9-A22E-01 21 46703436 46703436 C G POFUT2 Missense_Mutation p.G130A 0.22 deleterious(0.03) benign(0.289) TCGA-E9-A22E-01 2 179453522 179453562 TTGCTTACTTTAGTGACTTCTGGGGGATCAGGGCGACCAGG - TTN Frame_Shift_Del p.P20964Rfs*11 0.45 TCGA-E9-A22E-01 2 179471857 179471857 G A TTN Silent p.I17824I 0.32 TCGA-E9-A22E-01 2 241700197 241700197 G A KIF1A Missense_Mutation p.P777S 0.36 tolerated(0.11) benign(0.012) TCGA-E9-A22E-01 2 48873664 48873664 C T STON1-GTF2A1L Missense_Mutation p.P858L 0.33 deleterious(0) probably_damaging(1) TCGA-E9-A22E-01 2 669836 669836 T C TMEM18 Missense_Mutation p.Y83C 0.42 deleterious(0.03) possibly_damaging(0.818) TCGA-E9-A22E-01 2 69173354 69173354 T G GKN2 Intron 0.09 TCGA-E9-A22E-01 2 74708475 74708475 G C CCDC142 Missense_Mutation p.A378G 0.17 tolerated(0.27) benign(0.009) TCGA-E9-A22E-01 2 79313596 79313596 A T REG1B Missense_Mutation p.V73E 0.08 deleterious(0) possibly_damaging(0.738) TCGA-E9-A22E-01 2 96687828 96687828 C T GPAT2 3'UTR 0.13 TCGA-E9-A22E-01 3 132071616 132071616 T A ACPP Missense_Mutation p.L306H 0.07 tolerated(0.2) benign(0.014) TCGA-E9-A22E-01 3 154147332 154147332 G T GPR149 Missense_Mutation p.L25I 0.32 tolerated(0.24) benign(0.219) TCGA-E9-A22E-01 3 160156484 160156484 A C TRIM59 Missense_Mutation p.L163R 0.25 deleterious(0.05) benign(0.191) TCGA-E9-A22E-01 3 167512467 167512467 T G SERPINI1 Missense_Mutation p.Y246D 0.27 deleterious(0) probably_damaging(1) TCGA-E9-A22E-01 3 167512474 167512474 G C SERPINI1 Missense_Mutation p.G248A 0.28 deleterious(0.04) probably_damaging(1) TCGA-E9-A22E-01 3 186838930 186838930 T G RPL39L 3'UTR 0.12 TCGA-E9-A22E-01 3 42955921 42955921 G A ZNF662 Missense_Mutation p.G145E 0.24 tolerated(0.47) benign(0.178) TCGA-E9-A22E-01 3 62204610 62204610 G C PTPRG Missense_Mutation p.L747F 0.13 deleterious(0) possibly_damaging(0.642) TCGA-E9-A22E-01 4 100480499 100480499 T A TRMT10A 5'UTR 0.08 TCGA-E9-A22E-01 4 106614625 106614625 C T INTS12 Missense_Mutation p.E110K 0.09 tolerated(0.07) possibly_damaging(0.554) TCGA-E9-A22E-01 4 151153843 151153843 C G DCLK2 Missense_Mutation p.L494V 0.14 deleterious(0) probably_damaging(0.992) TCGA-E9-A22E-01 4 153250888 153250888 C T FBXW7 Missense_Mutation p.G391D 0.55 tolerated(0.25) possibly_damaging(0.767) TCGA-E9-A22E-01 4 184129105 184129105 G A WWC2 Splice_Site p.X81_splice 0.11 TCGA-E9-A22E-01 4 187535488 187535488 G C FAT1 Nonsense_Mutation p.S3029* 0.08 TCGA-E9-A22E-01 4 62813884 62813884 T A LPHN3 Missense_Mutation p.Y831N 0.13 deleterious(0.02) possibly_damaging(0.487) TCGA-E9-A22E-01 4 62813885 62813885 A T LPHN3 Missense_Mutation p.Y831F 0.13 tolerated(0.2) benign(0.02) TCGA-E9-A22E-01 4 88363019 88363019 T G NUDT9 Missense_Mutation p.L161R 0.11 deleterious(0.03) possibly_damaging(0.635) TCGA-E9-A22E-01 4 88902693 88902693 G A SPP1 Missense_Mutation p.D95N 0.07 tolerated(0.1) probably_damaging(0.959) TCGA-E9-A22E-01 5 137292177 137292177 C G FAM13B Intron 0.13 TCGA-E9-A22E-01 5 14609028 14609028 C G FAM105A Missense_Mutation p.L267V 0.10 deleterious(0.01) possibly_damaging(0.775) TCGA-E9-A22E-01 5 160758130 160758130 G C GABRB2 Missense_Mutation p.I279M 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-E9-A22E-01 5 88100452 88100452 T A MEF2C Missense_Mutation p.E74V 0.17 deleterious(0) probably_damaging(0.996) TCGA-E9-A22E-01 5 90049486 90049486 C A GPR98 Silent p.L3739L 0.45 TCGA-E9-A22E-01 6 119337997 119337997 G C FAM184A Missense_Mutation p.T482S 0.21 tolerated(0.23) benign(0.209) TCGA-E9-A22E-01 6 132874284 132874284 C A TAAR8 Nonsense_Mutation p.C151* 0.10 TCGA-E9-A22E-01 6 13470266 13470297 AATATTTCCTTACACATTGTAGCCACTCAGTA - AL583828.1 Frame_Shift_Del p.T73Sfs*6 0.23 TCGA-E9-A22E-01 6 160109177 160109177 G A SOD2 Silent p.N108N 0.09 TCGA-E9-A22E-01 6 25600690 25600690 G A LRRC16A Missense_Mutation p.E1090K 0.23 deleterious_low_confidence(0.03) benign(0.119) TCGA-E9-A22E-01 6 25600691 25600691 A T LRRC16A Missense_Mutation p.E1090V 0.23 deleterious_low_confidence(0.01) benign(0.236) TCGA-E9-A22E-01 6 25600824 25600824 G T LRRC16A Missense_Mutation p.E1134D 0.18 tolerated_low_confidence(0.12) benign(0.007) TCGA-E9-A22E-01 6 31868782 31868782 C A ZBTB12 Missense_Mutation p.V101F 0.22 deleterious(0) possibly_damaging(0.832) TCGA-E9-A22E-01 6 70049324 70049324 A G BAI3 Silent p.Q1129Q 0.04 TCGA-E9-A22E-01 7 158829459 158829459 G T VIPR2 Nonsense_Mutation p.Y244* 0.35 TCGA-E9-A22E-01 7 19184692 19184692 G A FERD3L Silent p.I98I 0.06 TCGA-E9-A22E-01 7 83689801 83689801 A T SEMA3A Missense_Mutation p.L176Q 0.21 tolerated(0.22) benign(0.1) TCGA-E9-A22E-01 7 91864817 91864817 T C KRIT1 Missense_Mutation p.Y210C 0.13 tolerated(0.14) benign(0.021) TCGA-E9-A22E-01 8 101624288 101624288 A C SNX31 Missense_Mutation p.L184R 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A22E-01 8 121239591 121239591 C A COL14A1 Missense_Mutation p.L713I 0.14 deleterious(0.04) benign(0.014) TCGA-E9-A22E-01 8 121239592 121239592 G A COL14A1 Splice_Site p.X713_splice 0.14 TCGA-E9-A22E-01 8 130762788 130762788 G C GSDMC Missense_Mutation p.F324L 0.09 tolerated(0.28) possibly_damaging(0.534) TCGA-E9-A22E-01 8 145742145 145742145 C T RECQL4 Missense_Mutation p.G120R 0.13 tolerated(0.77) benign(0.014) TCGA-E9-A22E-01 9 112898669 112898669 G C PALM2-AKAP2 Missense_Mutation p.R282T 0.25 deleterious(0.01) benign(0.373) TCGA-E9-A22E-01 9 131760894 131760894 G A NUP188 Silent p.Q1169Q 0.12 TCGA-E9-A22E-01 9 139261697 139261697 C T CARD9 Missense_Mutation p.E428K 0.18 tolerated(0.2) benign(0.012) TCGA-E9-A22E-01 9 34514510 34514510 G A DNAI1 Nonsense_Mutation p.W563* 0.41 TCGA-E9-A22E-01 9 5805055 5805055 C A ERMP1 Missense_Mutation p.G629V 0.27 tolerated(0.69) benign(0.002) TCGA-E9-A22E-01 9 72130950 72130950 C A APBA1 Missense_Mutation p.D393Y 0.29 deleterious(0.02) possibly_damaging(0.697) TCGA-E9-A22E-01 9 86570442 86570442 T G C9orf64 Missense_Mutation p.I151L 0.09 tolerated(0.28) benign(0.238) TCGA-E9-A22E-01 X 129263589 129263589 A T AIFM1 Silent p.G595G 0.19 TCGA-E9-A22E-01 X 135427449 135427449 A T GPR112 Silent p.T528T 0.10 TCGA-E9-A22E-01 X 15262744 15262744 A G ASB9 Missense_Mutation p.S257P 0.19 tolerated(0.15) benign(0.107) TCGA-E9-A22E-01 X 153591108 153591108 G A FLNA Silent p.Y775Y 0.26 TCGA-E9-A22E-01 X 153908516 153908516 G T GAB3 Silent p.R514R 0.22 TCGA-E9-A22E-01 X 18947408 18947408 C G PHKA2 Missense_Mutation p.G421A 0.08 tolerated(0.14) possibly_damaging(0.759) TCGA-E9-A22E-01 X 47307743 47307743 A C ZNF41 Missense_Mutation p.F476V 0.06 deleterious(0) probably_damaging(0.938) TCGA-E9-A22E-01 X 54467208 54467208 G A TSR2 Missense_Mutation p.R56H 0.19 tolerated(0.19) benign(0.005) TCGA-E9-A22E-01 X 73963696 73963696 C G KIAA2022 Missense_Mutation p.Q232H 0.06 deleterious(0) benign(0.021) TCGA-E9-A22G-01 10 112745470 112745470 T C SHOC2 Missense_Mutation p.I263T 0.15 deleterious(0) benign(0.252) TCGA-E9-A22G-01 10 14965091 14965091 G A DCLRE1C Intron 0.48 TCGA-E9-A22G-01 10 35500425 35500425 T - CREM Intron 0.30 TCGA-E9-A22G-01 10 50681587 50681587 T G ERCC6 Missense_Mutation p.Y882S 0.19 deleterious(0) possibly_damaging(0.874) TCGA-E9-A22G-01 10 53059335 53059335 C G PRKG1 Intron 0.41 TCGA-E9-A22G-01 10 89124824 89124824 G C NUTM2D Missense_Mutation p.G461A 0.37 tolerated(0.64) benign(0.423) TCGA-E9-A22G-01 10 97174323 97174323 C T SORBS1 Silent p.P246P 0.09 TCGA-E9-A22G-01 11 47608354 47608354 G A FAM180B Missense_Mutation p.V53M 0.34 tolerated(0.4) benign(0.013) TCGA-E9-A22G-01 11 48238902 48238902 C G OR4B1 Missense_Mutation p.P181A 0.34 deleterious(0) probably_damaging(0.926) TCGA-E9-A22G-01 11 58317469 58317469 A C LPXN Missense_Mutation p.Y218D 0.46 deleterious(0) probably_damaging(0.994) TCGA-E9-A22G-01 11 61071447 61071447 T G DDB1 Missense_Mutation p.N908H 0.38 tolerated(0.62) possibly_damaging(0.714) TCGA-E9-A22G-01 11 63138646 63138646 G A SLC22A9 Missense_Mutation p.A148T 0.33 tolerated(0.15) possibly_damaging(0.461) TCGA-E9-A22G-01 11 67795240 67795240 C A ALDH3B1 Missense_Mutation p.H412N 0.33 deleterious(0) probably_damaging(0.995) TCGA-E9-A22G-01 11 72492197 72492197 G T STARD10 Silent p.P10P 0.50 TCGA-E9-A22G-01 11 93480595 93480595 T C C11orf54 Silent p.S12S 0.07 TCGA-E9-A22G-01 12 10978499 10978499 T C TAS2R10 Missense_Mutation p.R124G 0.69 deleterious(0.02) possibly_damaging(0.903) TCGA-E9-A22G-01 12 15803878 15803878 T A EPS8 Missense_Mutation p.E438V 0.28 deleterious(0) probably_damaging(0.999) TCGA-E9-A22G-01 12 18852863 18852863 G A PLCZ1 Silent p.L347L 0.37 TCGA-E9-A22G-01 12 31435670 31435670 C A FAM60A Silent p.L214L 0.48 TCGA-E9-A22G-01 12 52374849 52374849 G A ACVR1B Nonsense_Mutation p.W226* 0.85 TCGA-E9-A22G-01 12 75444928 75444928 T A KCNC2 Missense_Mutation p.E286V 0.20 deleterious(0) probably_damaging(0.969) TCGA-E9-A22G-01 12 994697 994697 T C WNK1 Missense_Mutation p.I1576T 0.23 deleterious_low_confidence(0.01) benign(0.366) TCGA-E9-A22G-01 13 114324074 114324074 G C GRK1 Missense_Mutation p.E258Q 0.59 tolerated(0.25) benign(0.008) TCGA-E9-A22G-01 13 114325949 114325949 G C GRK1 Missense_Mutation p.E321D 0.29 deleterious(0.02) possibly_damaging(0.708) TCGA-E9-A22G-01 13 20797418 20797418 A T GJB6 Missense_Mutation p.F68I 0.62 tolerated(0.07) possibly_damaging(0.576) TCGA-E9-A22G-01 14 75537318 75537318 C T ZC2HC1C Silent p.G14G 0.62 TCGA-E9-A22G-01 15 43821506 43821506 A C MAP1A Missense_Mutation p.K2612T 0.83 benign(0.068) TCGA-E9-A22G-01 15 51780190 51780190 A C DMXL2 Silent p.A1726A 0.10 TCGA-E9-A22G-01 16 29899936 29899936 G - SEZ6L2 Frame_Shift_Del p.L322Cfs*49 0.74 TCGA-E9-A22G-01 16 30593995 30593995 C A ZNF785 Missense_Mutation p.R368S 0.62 tolerated(0.71) possibly_damaging(0.587) TCGA-E9-A22G-01 16 90142278 90142278 T C PRDM7 Missense_Mutation p.D14G 0.77 tolerated_low_confidence(0.1) possibly_damaging(0.681) TCGA-E9-A22G-01 17 12659782 12659782 A G MYOCD Missense_Mutation p.S704G 0.74 tolerated(0.5) benign(0.001) TCGA-E9-A22G-01 17 15942922 15942922 A T NCOR1 Missense_Mutation p.N2260K 0.77 probably_damaging(0.993) TCGA-E9-A22G-01 17 53038558 53038558 C A TOM1L1 Intron 0.14 TCGA-E9-A22G-01 17 65340892 65340892 G T PSMD12 Missense_Mutation p.L305I 0.43 tolerated(0.06) possibly_damaging(0.597) TCGA-E9-A22G-01 17 74303558 74303558 G T QRICH2 Silent p.L8L 0.78 TCGA-E9-A22G-01 17 7577127 7577128 - A TP53 Frame_Shift_Ins p.E271* 0.47 TCGA-E9-A22G-01 17 7909959 7909959 C A GUCY2D Missense_Mutation p.H435Q 0.44 deleterious(0.01) possibly_damaging(0.878) TCGA-E9-A22G-01 17 79872224 79872224 C G SIRT7 Silent p.A254A 0.50 TCGA-E9-A22G-01 18 2750494 2750494 G C SMCHD1 Missense_Mutation p.G1385A 0.26 deleterious(0.04) benign(0.018) TCGA-E9-A22G-01 19 10277360 10277378 TTCTGTCACAGAAGACAAC - DNMT1 Splice_Site p.X268_splice 0.37 TCGA-E9-A22G-01 19 17001200 17001222 ACCCGAGCCCCAGCGCCTGGGGC - F2RL3 Frame_Shift_Del p.D309Efs*97 0.44 TCGA-E9-A22G-01 19 22939859 22939859 A G ZNF99 3'Flank 0.22 TCGA-E9-A22G-01 19 36207192 36207192 C T ZBTB32 Silent p.V394V 0.50 TCGA-E9-A22G-01 19 37904029 37904029 T C ZNF569 Missense_Mutation p.T511A 0.37 tolerated(0.74) probably_damaging(0.974) TCGA-E9-A22G-01 19 38379529 38379529 T A WDR87 Missense_Mutation p.E1555D 0.19 benign(0.354) TCGA-E9-A22G-01 19 38380336 38380336 G C WDR87 Silent p.L1286L 0.15 TCGA-E9-A22G-01 19 38380480 38380480 A G WDR87 Silent p.D1238D 0.12 TCGA-E9-A22G-01 19 7806164 7806164 T G CD209 3'UTR 0.92 TCGA-E9-A22G-01 1 144931537 144931537 G C PDE4DIP Intron 0.22 TCGA-E9-A22G-01 1 145589029 145589029 G A NUDT17 Silent p.A73A 0.25 TCGA-E9-A22G-01 1 151734858 151734858 C A MRPL9 Missense_Mutation p.E143D 0.27 deleterious(0.01) possibly_damaging(0.473) TCGA-E9-A22G-01 1 152129003 152129003 T C RPTN Missense_Mutation p.D191G 0.30 tolerated(0.07) benign(0.026) TCGA-E9-A22G-01 1 152191305 152191305 G T HRNR Missense_Mutation p.H934N 0.34 unknown(0) TCGA-E9-A22G-01 1 152279627 152279627 C G FLG Missense_Mutation p.D2579H 0.33 probably_damaging(0.962) TCGA-E9-A22G-01 1 155313997 155313997 C T ASH1L Missense_Mutation p.R2653Q 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E9-A22G-01 1 156737604 156737604 C T PRCC Missense_Mutation p.P14L 0.57 deleterious_low_confidence(0) unknown(0) TCGA-E9-A22G-01 1 156901797 156901797 C A LRRC71 Silent p.V473V 0.23 TCGA-E9-A22G-01 1 158670011 158670026 AGTCAGTTGGGTACAT - OR6K2 Frame_Shift_Del p.C140* 0.20 TCGA-E9-A22G-01 1 170959084 170959084 C A MROH9 Missense_Mutation p.T323K 0.27 deleterious(0) probably_damaging(0.965) TCGA-E9-A22G-01 1 20879587 20879587 C A FAM43B Missense_Mutation p.P41T 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-E9-A22G-01 1 211749099 211749099 A G SLC30A1 Silent p.T385T 0.35 TCGA-E9-A22G-01 1 225546213 225546213 C G DNAH14 Missense_Mutation p.P3022A 0.32 tolerated(0.19) benign(0.244) TCGA-E9-A22G-01 1 22974188 22974197 TGTGGCTGGC - C1QC Frame_Shift_Del p.W218Sfs*103 0.57 TCGA-E9-A22G-01 1 24400724 24400724 T C MYOM3 Missense_Mutation p.D965G 0.57 deleterious(0) probably_damaging(1) TCGA-E9-A22G-01 1 32502579 32502579 C A KHDRBS1 Silent p.P280P 0.08 TCGA-E9-A22G-01 1 32797806 32797807 AG - HDAC1 Frame_Shift_Del p.E446Gfs*2 0.39 TCGA-E9-A22G-01 1 43220572 43220572 T C LEPRE1 Missense_Mutation p.E438G 0.23 deleterious(0.04) possibly_damaging(0.852) TCGA-E9-A22G-01 1 54605513 54605513 C A CDCP2 Missense_Mutation p.V344L 0.21 tolerated(0.31) benign(0.025) TCGA-E9-A22G-01 1 6272929 6272929 C G RNF207 Intron 0.62 TCGA-E9-A22G-01 1 67243066 67243066 T A TCTEX1D1 Missense_Mutation p.F157I 0.35 deleterious(0.04) benign(0.151) TCGA-E9-A22G-01 1 75684372 75684372 A - SLC44A5 Frame_Shift_Del p.G445Efs*24 0.42 TCGA-E9-A22G-01 20 33584219 33584219 C G MYH7B Missense_Mutation p.A1047G 0.52 possibly_damaging(0.842) TCGA-E9-A22G-01 20 45174574 45174574 G A OCSTAMP Nonsense_Mutation p.Q147* 0.79 TCGA-E9-A22G-01 20 55909042 55909042 G A SPO11 Splice_Site p.X134_splice 0.70 TCGA-E9-A22G-01 21 45784057 45784057 C G TRPM2 Silent p.P105P 0.25 TCGA-E9-A22G-01 22 18077351 18077351 G A ATP6V1E1 Missense_Mutation p.R188C 0.43 deleterious(0.03) benign(0.013) TCGA-E9-A22G-01 22 35729468 35729468 C G TOM1 Silent p.L335L 0.40 TCGA-E9-A22G-01 22 35779123 35779123 C T HMOX1 Silent p.A16A 0.45 TCGA-E9-A22G-01 22 46777820 46777820 G A CELSR1 Silent p.A2337A 0.33 TCGA-E9-A22G-01 22 50945225 50945225 G T LMF2 Missense_Mutation p.L112M 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-E9-A22G-01 2 159522952 159522952 C T PKP4 Nonsense_Mutation p.R869* 0.80 TCGA-E9-A22G-01 2 233345461 233345461 T A ECEL1 Silent p.T706T 0.90 TCGA-E9-A22G-01 2 234750032 234750032 T C HJURP Missense_Mutation p.N465S 0.78 tolerated(0.1) benign(0.157) TCGA-E9-A22G-01 2 26492837 26492837 C A HADHB Missense_Mutation p.P76T 0.31 tolerated(0.08) probably_damaging(0.93) TCGA-E9-A22G-01 2 27884327 27884327 T C SUPT7L Intron 0.13 TCGA-E9-A22G-01 2 68717336 68717336 A C APLF Missense_Mutation p.R37S 0.35 deleterious(0) probably_damaging(0.962) TCGA-E9-A22G-01 2 73989869 73989869 C G DUSP11 Silent p.R351R 0.12 TCGA-E9-A22G-01 2 87141012 87141012 T C RGPD1 5'Flank 0.60 TCGA-E9-A22G-01 3 111795822 111795822 C T TMPRSS7 Silent p.Y559Y 0.60 TCGA-E9-A22G-01 3 122002995 122002995 A G CASR Missense_Mutation p.T742A 0.78 deleterious(0.02) possibly_damaging(0.519) TCGA-E9-A22G-01 3 15491886 15491886 C G COLQ 3'UTR 0.89 TCGA-E9-A22G-01 3 164905992 164905992 C A SLITRK3 Missense_Mutation p.G876V 0.43 tolerated_low_confidence(0.18) probably_damaging(0.972) TCGA-E9-A22G-01 3 183436340 183436340 C G YEATS2 Missense_Mutation p.A84G 0.58 deleterious(0) possibly_damaging(0.837) TCGA-E9-A22G-01 3 183681187 183681187 T C ABCC5 Missense_Mutation p.T741A 0.31 deleterious(0) probably_damaging(0.931) TCGA-E9-A22G-01 3 195515927 195515927 G C MUC4 Missense_Mutation p.Q842E 0.18 unknown(0) TCGA-E9-A22G-01 3 38802770 38802770 G A SCN10A Nonsense_Mutation p.Q266* 0.90 TCGA-E9-A22G-01 4 126369679 126369679 A G FAT4 Missense_Mutation p.Y2503C 0.83 probably_damaging(0.987) TCGA-E9-A22G-01 4 15850355 15850355 C T CD38 3'UTR 0.80 TCGA-E9-A22G-01 4 57181137 57181137 C G KIAA1211 Missense_Mutation p.P490R 0.36 tolerated(0.31) possibly_damaging(0.904) TCGA-E9-A22G-01 4 57797784 57797784 A G REST Silent p.S920S 0.07 TCGA-E9-A22G-01 4 76708240 76708240 C T USO1 Missense_Mutation p.T296I 0.32 tolerated(0.1) benign(0.056) TCGA-E9-A22G-01 4 76734444 76734444 T C USO1 Missense_Mutation p.I971T 0.59 deleterious_low_confidence(0) benign(0.291) TCGA-E9-A22G-01 4 88940608 88940608 A C PKD2 Splice_Site p.X199_splice 0.38 TCGA-E9-A22G-01 5 115346461 115346461 C G AQPEP Missense_Mutation p.T706R 0.88 deleterious(0) probably_damaging(0.951) TCGA-E9-A22G-01 5 118814681 118814681 C G HSD17B4 Missense_Mutation p.A221G 0.74 deleterious(0) probably_damaging(1) TCGA-E9-A22G-01 5 180626095 180626095 C T TRIM7 Missense_Mutation p.R291K 0.73 tolerated(0.12) benign(0.004) TCGA-E9-A22G-01 5 19839206 19839206 G A CDH18 5'UTR 0.53 TCGA-E9-A22G-01 5 33984320 33984320 C A SLC45A2 Silent p.G123G 0.54 TCGA-E9-A22G-01 6 29693318 29693318 G T HLA-F Silent p.V327V 0.39 TCGA-E9-A22G-01 6 32188059 32188059 G T NOTCH4 Missense_Mutation p.L388I 0.21 tolerated(0.38) possibly_damaging(0.78) TCGA-E9-A22G-01 6 34256620 34256620 C G NUDT3 Missense_Mutation p.L143F 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-E9-A22G-01 6 44217470 44217470 T A HSP90AB1 Nonsense_Mutation p.L138* 0.06 TCGA-E9-A22G-01 6 88144769 88144769 C A C6ORF165 Missense_Mutation p.Q498K 0.52 tolerated(0.08) benign(0.004) TCGA-E9-A22G-01 7 30465066 30465066 G A NOD1 3'UTR 0.90 TCGA-E9-A22G-01 7 83590909 83590909 G T SEMA3A Missense_Mutation p.S698R 0.51 tolerated(0.34) benign(0.046) TCGA-E9-A22G-01 7 96639203 96639203 G A DLX6 Silent p.A242A 0.39 TCGA-E9-A22G-01 8 144940496 144940496 C G EPPK1 Missense_Mutation p.G2309A 0.07 probably_damaging(0.997) TCGA-E9-A22G-01 8 21951949 21951949 A G FAM160B2 Splice_Site p.X16_splice 0.29 TCGA-E9-A22G-01 8 27369412 27369412 G C EPHX2 Silent p.G240G 0.33 TCGA-E9-A22G-01 8 76465339 76465339 T C HNF4G Silent p.G174G 0.28 TCGA-E9-A22G-01 9 101585579 101585579 C A GALNT12 Missense_Mutation p.T138K 0.07 deleterious(0) probably_damaging(0.917) TCGA-E9-A22G-01 9 137804958 137804958 C T FCN1 Silent p.R124R 0.84 TCGA-E9-A22G-01 9 734823 734823 C G KANK1 Silent p.T1107T 0.46 TCGA-E9-A22G-01 X 65409615 65409615 G A HEPH Missense_Mutation p.E354K 0.18 deleterious(0) probably_damaging(0.999) TCGA-E9-A22G-01 X 86087316 86087316 A G DACH2 3'UTR 0.91 TCGA-E9-A22H-01 10 89473862 89473862 T A PAPSS2 Missense_Mutation p.V148E 0.11 deleterious(0) possibly_damaging(0.752) TCGA-E9-A22H-01 11 76371567 76371567 C T LRRC32 Missense_Mutation p.R357Q 0.23 tolerated(0.67) benign(0.002) TCGA-E9-A22H-01 12 108626636 108626636 G A WSCD2 Missense_Mutation p.G370S 0.27 deleterious(0.02) benign(0.382) TCGA-E9-A22H-01 12 50452677 50452677 G A ASIC1 Missense_Mutation p.R43Q 0.32 tolerated(0.27) benign(0.343) TCGA-E9-A22H-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.83 deleterious(0) probably_damaging(0.999) TCGA-E9-A22H-01 15 62214879 62214879 G A VPS13C Missense_Mutation p.T2231M 0.10 tolerated(0.09) benign(0.018) TCGA-E9-A22H-01 16 57760065 57760065 G A CCDC135 Missense_Mutation p.R615H 0.50 tolerated(0.05) benign(0.063) TCGA-E9-A22H-01 17 6979420 6979420 C G CLEC10A Missense_Mutation p.C135S 0.17 tolerated(0.72) benign(0.001) TCGA-E9-A22H-01 19 54818753 54818753 A G LILRA5 Missense_Mutation p.L282P 0.06 deleterious(0) possibly_damaging(0.658) TCGA-E9-A22H-01 1 28304975 28304975 G C EYA3 Missense_Mutation p.S517R 0.21 deleterious(0) probably_damaging(0.998) TCGA-E9-A22H-01 1 55331049 55331049 C T DHCR24 Missense_Mutation p.R316Q 0.34 tolerated(0.61) benign(0.001) TCGA-E9-A22H-01 1 8926539 8926539 C T ENO1 Missense_Mutation p.G156S 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.538) TCGA-E9-A22H-01 20 46385970 46385970 G A SULF2 Silent p.I46I 0.12 TCGA-E9-A22H-01 22 42059704 42059704 C T XRCC6 Missense_Mutation p.T572M 0.14 deleterious(0.03) benign(0.093) TCGA-E9-A22H-01 2 202141586 202141586 C T CASP8 Missense_Mutation p.R292W 0.13 deleterious(0) probably_damaging(1) TCGA-E9-A22H-01 3 48264990 48264990 G A CAMP 5'UTR 0.42 TCGA-E9-A22H-01 3 74315673 74315673 T - CNTN3 Frame_Shift_Del p.D982Vfs*13 0.33 TCGA-E9-A22H-01 4 175897839 175897839 C G ADAM29 Missense_Mutation p.T388R 0.39 tolerated(0.47) benign(0.026) TCGA-E9-A22H-01 4 90874302 90874302 G A MMRN1 Silent p.P1140P 0.07 TCGA-E9-A22H-01 5 56161678 56161678 A G MAP3K1 Missense_Mutation p.Y392C 0.35 deleterious(0) probably_damaging(0.962) TCGA-E9-A22H-01 6 125598270 125598270 T A HDDC2 Missense_Mutation p.Q165H 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-E9-A22H-01 6 16327064 16327064 G A ATXN1 Missense_Mutation p.P493L 0.11 deleterious(0) probably_damaging(0.999) TCGA-E9-A22H-01 6 6182361 6182361 A T F13A1 Missense_Mutation p.L440H 0.17 deleterious(0) probably_damaging(0.988) TCGA-E9-A22H-01 6 96990799 96990799 G A UFL1 Missense_Mutation p.G437R 0.37 deleterious(0.01) probably_damaging(0.952) TCGA-E9-A22H-01 7 100485396 100485396 G A SRRT Missense_Mutation p.A748T 0.39 tolerated(0.36) benign(0.166) TCGA-E9-A22H-01 7 114619630 114619631 - A MDFIC Frame_Shift_Ins p.N207Efs*23 0.30 TCGA-E9-A22H-01 7 150068736 150068736 C T REPIN1 Missense_Mutation p.R193W 0.29 deleterious(0) possibly_damaging(0.893) TCGA-E9-A22H-01 9 96294650 96294650 A G FAM120A Intron 0.29 TCGA-E9-A22H-01 X 70356283 70356284 - CA MED12 Frame_Shift_Ins p.L1730Tfs*2 0.25 TCGA-E9-A243-01 10 13174129 13174129 A G OPTN Silent p.E488E 0.13 TCGA-E9-A243-01 10 75005827 75005852 CTGATCCATGTCACCCTTGAAGTCCA - DNAJC9 Frame_Shift_Del p.L135Hfs*25 0.11 TCGA-E9-A243-01 11 36518707 36518707 T C TRAF6 Missense_Mutation p.Q186R 0.33 tolerated(0.83) benign(0.124) TCGA-E9-A243-01 11 49831435 49831435 A C RP11-707M1.1 RNA 0.20 TCGA-E9-A243-01 11 73881827 73881827 C A C2CD3 Missense_Mutation p.R4L 0.07 deleterious(0) unknown(0) TCGA-E9-A243-01 11 74632347 74632347 C A XRRA1 Missense_Mutation p.D182Y 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-E9-A243-01 11 85722144 85722144 C A PICALM Nonsense_Mutation p.E232* 0.10 TCGA-E9-A243-01 12 108012010 108012010 C A BTBD11 Silent p.A769A 0.26 TCGA-E9-A243-01 12 117696222 117696222 G T NOS1 Missense_Mutation p.N837K 0.15 tolerated(0.25) benign(0.201) TCGA-E9-A243-01 12 117977596 117977596 T C KSR2 Missense_Mutation p.S539G 0.27 tolerated(0.05) possibly_damaging(0.9) TCGA-E9-A243-01 12 40646804 40646804 T C LRRK2 Missense_Mutation p.L425P 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A243-01 12 46320764 46320764 G A SCAF11 Missense_Mutation p.S907F 0.25 deleterious(0) probably_damaging(0.99) TCGA-E9-A243-01 12 49228117 49228117 G C DDX23 Missense_Mutation p.R516G 0.09 deleterious(0) probably_damaging(0.947) TCGA-E9-A243-01 12 93221730 93221732 TTG - EEA1 In_Frame_Del p.Q454del 0.20 TCGA-E9-A243-01 14 22356665 22356665 A G TRAV12-2 Missense_Mutation p.Y108C 0.19 deleterious(0) probably_damaging(0.999) TCGA-E9-A243-01 15 27777844 27777844 G A GABRG3 Silent p.E407E 0.10 TCGA-E9-A243-01 15 52230395 52230395 C T LEO1 Silent p.K653K 0.08 TCGA-E9-A243-01 15 53889341 53889341 A G WDR72 Missense_Mutation p.L1028P 0.06 tolerated(0.11) benign(0.352) TCGA-E9-A243-01 15 55912380 55912380 G T PRTG Missense_Mutation p.P1095T 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.662) TCGA-E9-A243-01 15 59323149 59323149 T A RNF111 Missense_Mutation p.I43N 0.21 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-E9-A243-01 15 72546845 72546845 C G PARP6 Missense_Mutation p.R381P 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-E9-A243-01 16 28507082 28507082 G C APOBR Silent p.G240G 0.23 TCGA-E9-A243-01 16 29828128 29828128 G C PAGR1 Missense_Mutation p.E94D 0.40 tolerated(0.23) benign(0.074) TCGA-E9-A243-01 16 31336939 31336939 C G ITGAM Nonsense_Mutation p.S876* 0.06 TCGA-E9-A243-01 16 71610261 71610261 C T TAT Missense_Mutation p.V20M 0.16 deleterious_low_confidence(0.01) benign(0.041) TCGA-E9-A243-01 17 16326827 16326827 G A TRPV2 Missense_Mutation p.V224M 0.19 tolerated(0.17) possibly_damaging(0.461) TCGA-E9-A243-01 17 26691976 26691976 G A CTB-96E2.2 Missense_Mutation p.R111W 0.14 deleterious(0) probably_damaging(0.981) TCGA-E9-A243-01 17 61994783 61994783 G A GH1 Silent p.D180D 0.36 TCGA-E9-A243-01 17 7578190 7578190 T G TP53 Missense_Mutation p.Y220S 0.11 deleterious(0) probably_damaging(1) TCGA-E9-A243-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.26 TCGA-E9-A243-01 18 22057342 22057342 C T HRH4 Missense_Mutation p.S330F 0.05 tolerated(0.7) benign(0.091) TCGA-E9-A243-01 19 38380815 38380815 C T WDR87 Missense_Mutation p.A1127T 0.22 benign(0.048) TCGA-E9-A243-01 1 1354510 1354510 C G ANKRD65 Missense_Mutation p.K390N 0.23 tolerated_low_confidence(0.35) unknown(0) TCGA-E9-A243-01 1 150230552 150230552 T A CA14 Missense_Mutation p.V10E 0.17 tolerated(0.63) possibly_damaging(0.649) TCGA-E9-A243-01 1 152192919 152192919 G A HRNR Nonsense_Mutation p.Q396* 0.18 TCGA-E9-A243-01 1 156146407 156146407 G C SEMA4A Silent p.V635V 0.07 TCGA-E9-A243-01 1 16921090 16921090 T C NBPF1 5'UTR 0.33 TCGA-E9-A243-01 1 211652657 211652657 C T RD3 Silent p.L103L 0.19 TCGA-E9-A243-01 1 214557574 214557574 G A PTPN14 Silent p.L542L 0.07 TCGA-E9-A243-01 1 231342533 231342533 G A TRIM67 Missense_Mutation p.D606N 0.06 deleterious(0.01) benign(0.305) TCGA-E9-A243-01 1 248436199 248436199 A C OR2T33 Missense_Mutation p.C306W 0.06 deleterious(0.02) benign(0.008) TCGA-E9-A243-01 1 9781585 9781585 T C PIK3CD Missense_Mutation p.F632S 0.21 deleterious(0) probably_damaging(1) TCGA-E9-A243-01 20 14307453 14307453 G A FLRT3 Missense_Mutation p.R234W 0.41 deleterious(0) probably_damaging(1) TCGA-E9-A243-01 20 34218833 34218833 C T CPNE1 Missense_Mutation p.D334N 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-E9-A243-01 20 37380924 37380924 C A ACTR5 Silent p.I252I 0.12 TCGA-E9-A243-01 21 31066219 31066219 C G GRIK1 Silent p.R94R 0.09 TCGA-E9-A243-01 21 44323603 44323603 G A NDUFV3 Missense_Mutation p.D161N 0.21 deleterious(0.03) probably_damaging(0.984) TCGA-E9-A243-01 2 100007074 100007074 G C EIF5B Missense_Mutation p.G885A 0.25 probably_damaging(0.974) TCGA-E9-A243-01 2 153435429 153435429 C G FMNL2 Missense_Mutation p.P245A 0.24 benign(0.155) TCGA-E9-A243-01 2 160139361 160139361 T C WDSUB1 Missense_Mutation p.T74A 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A243-01 2 168101752 168101752 T A XIRP2 Missense_Mutation p.L1284I 0.22 probably_damaging(0.999) TCGA-E9-A243-01 2 197865158 197865158 C G ANKRD44 Missense_Mutation p.R810T 0.20 tolerated(0.44) benign(0.06) TCGA-E9-A243-01 2 79384406 79384406 C G REG3A Missense_Mutation p.W158C 0.07 deleterious(0) probably_damaging(1) TCGA-E9-A243-01 2 88327780 88327780 C G KRCC1 Silent p.L101L 0.05 TCGA-E9-A243-01 3 142274964 142274964 T A ATR Missense_Mutation p.D699V 0.17 tolerated(0.17) benign(0.003) TCGA-E9-A243-01 3 161221388 161221388 G T OTOL1 Missense_Mutation p.K364N 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-E9-A243-01 3 57394164 57394164 C T DNAH12 Missense_Mutation p.R2021H 0.11 deleterious(0) possibly_damaging(0.812) TCGA-E9-A243-01 3 58368396 58368396 A C PXK Missense_Mutation p.L119F 0.21 deleterious(0) possibly_damaging(0.651) TCGA-E9-A243-01 3 93733265 93733265 C T STX19 Silent p.L283L 0.10 TCGA-E9-A243-01 4 106601271 106601271 A T ARHGEF38 3'UTR 0.33 TCGA-E9-A243-01 4 146467997 146467997 G C SMAD1 Missense_Mutation p.K306N 0.13 deleterious(0.04) benign(0.006) TCGA-E9-A243-01 4 189026084 189026084 C T TRIML2 Silent p.K14K 0.07 TCGA-E9-A243-01 5 132652191 132652191 G C FSTL4 Missense_Mutation p.A188G 0.27 tolerated(0.21) benign(0.003) TCGA-E9-A243-01 5 13871861 13871861 G C DNAH5 Missense_Mutation p.S1137C 0.06 possibly_damaging(0.7) TCGA-E9-A243-01 5 5464537 5464537 C T KIAA0947 Missense_Mutation p.S1697F 0.11 deleterious(0) probably_damaging(0.957) TCGA-E9-A243-01 6 128404925 128404925 C A PTPRK Nonsense_Mutation p.E504* 0.10 TCGA-E9-A243-01 6 43007917 43007917 C G CUL7 Missense_Mutation p.R1508T 0.09 deleterious(0.01) benign(0.149) TCGA-E9-A243-01 6 46826342 46826342 C T GPR116 Missense_Mutation p.V1100I 0.08 deleterious(0.01) possibly_damaging(0.658) TCGA-E9-A243-01 6 90660867 90660867 G A BACH2 Missense_Mutation p.P320S 0.33 tolerated_low_confidence(0.2) benign(0.025) TCGA-E9-A243-01 7 143091403 143091403 C G EPHA1 Missense_Mutation p.E796Q 0.19 deleterious(0) probably_damaging(1) TCGA-E9-A243-01 7 99711749 99711749 G A TAF6 Silent p.I65I 0.16 TCGA-E9-A243-01 8 141310677 141310677 C T TRAPPC9 Silent p.R651R 0.07 TCGA-E9-A243-01 8 38067546 38067546 C T BAG4 Silent p.S303S 0.30 TCGA-E9-A243-01 8 51617157 51617157 C A SNTG1 Intron 0.16 TCGA-E9-A243-01 8 82626198 82626198 C T ZFAND1 Silent p.L145L 0.12 TCGA-E9-A243-01 8 86572313 86572313 G C REXO1L1P 3'UTR 0.31 TCGA-E9-A243-01 9 101006381 101006381 A T TBC1D2 Missense_Mutation p.L181Q 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-E9-A243-01 9 104315014 104315014 A G RNF20 Missense_Mutation p.K627R 0.33 tolerated(0.41) probably_damaging(0.983) TCGA-E9-A243-01 9 111775599 111775599 G C CTNNAL1 Missense_Mutation p.L42V 0.28 tolerated(1) benign(0.011) TCGA-E9-A243-01 9 131568232 131568232 G C TBC1D13 Missense_Mutation p.W338S 0.23 deleterious(0) probably_damaging(1) TCGA-E9-A243-01 9 35689719 35689719 A G TPM2 Silent p.A32A 0.18 TCGA-E9-A243-01 X 101910990 101910990 G A GPRASP1 Missense_Mutation p.E717K 0.11 deleterious(0.05) benign(0.03) TCGA-E9-A243-01 X 103044308 103044308 C A PLP1 Missense_Mutation p.A248E 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A243-01 X 117743298 117743298 G C DOCK11 Missense_Mutation p.E979Q 0.12 deleterious(0.05) possibly_damaging(0.697) TCGA-E9-A243-01 X 117788579 117788579 C A DOCK11 Silent p.P1570P 0.22 TCGA-E9-A243-01 X 117788580 117788580 G T DOCK11 Missense_Mutation p.A1571S 0.22 tolerated(1) benign(0.002) TCGA-E9-A243-01 X 119673224 119673224 T A CUL4B Missense_Mutation p.K565M 0.13 deleterious(0) possibly_damaging(0.881) TCGA-E9-A243-01 X 131762589 131762589 G - HS6ST2 Frame_Shift_Del p.L534Ffs*9 0.09 TCGA-E9-A243-01 X 22051096 22051096 T C PHEX 5'UTR 0.26 TCGA-E9-A243-01 X 38145826 38145826 T C RPGR Missense_Mutation p.E809G 0.11 unknown(0) TCGA-E9-A243-01 X 48759291 48759291 G C PQBP1 Silent p.S88S 0.19 TCGA-E9-A243-01 X 54259337 54259337 G C WNK3 Missense_Mutation p.P1582R 0.13 deleterious(0.01) benign(0.197) TCGA-E9-A244-01 10 135165568 135165568 G T PRAP1 Silent p.L62L 0.17 TCGA-E9-A244-01 10 135165631 135165631 C T PRAP1 Silent p.G83G 0.18 TCGA-E9-A244-01 10 16960761 16960773 TCCACTCCATCCC - CUBN Frame_Shift_Del p.R2283Lfs*28 0.50 TCGA-E9-A244-01 10 43869098 43869098 G T FXYD4 5'UTR 0.42 TCGA-E9-A244-01 10 47087176 47087176 G A NPY4R Silent p.S131S 0.10 TCGA-E9-A244-01 10 50118265 50118265 A G LRRC18 3'UTR 0.39 TCGA-E9-A244-01 10 50534988 50534988 A C C10orf71 3'UTR 0.21 TCGA-E9-A244-01 10 95072909 95072909 G C MYOF Missense_Mutation p.C1919W 0.15 deleterious(0) probably_damaging(1) TCGA-E9-A244-01 10 95721266 95721266 C - PIPSL RNA 0.20 TCGA-E9-A244-01 11 113704197 113704197 G A USP28 Missense_Mutation p.P235L 0.55 deleterious(0) probably_damaging(1) TCGA-E9-A244-01 11 119170209 119170209 C A CBL Silent p.V813V 0.39 TCGA-E9-A244-01 11 124252388 124252388 G A OR8B2 Silent p.L284L 0.41 TCGA-E9-A244-01 11 124971144 124971144 G AT TMEM218 Frame_Shift_Ins p.L56Ifs*7 0.14 TCGA-E9-A244-01 11 30033730 30033730 A T KCNA4 Missense_Mutation p.Y166N 0.19 deleterious(0.05) probably_damaging(0.986) TCGA-E9-A244-01 11 33596315 33596315 A G KIAA1549L Missense_Mutation p.N1136S 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-E9-A244-01 11 55405928 55405928 G C OR4P4 Missense_Mutation p.C32S 0.10 deleterious(0.04) benign(0.027) TCGA-E9-A244-01 11 61404585 61404585 C G RPLP0P2 RNA 0.20 TCGA-E9-A244-01 11 63978524 63978524 G A FERMT3 Missense_Mutation p.S132N 0.25 tolerated(1) benign(0) TCGA-E9-A244-01 11 64622246 64622246 G A EHD1 Silent p.N388N 0.32 TCGA-E9-A244-01 12 104459971 104459971 G C HCFC2 Missense_Mutation p.V64L 0.28 deleterious(0.03) benign(0.056) TCGA-E9-A244-01 12 117691526 117691526 G T NOS1 Silent p.S889S 0.48 TCGA-E9-A244-01 12 13768170 13768170 C G GRIN2B Missense_Mutation p.G511A 0.12 deleterious(0) possibly_damaging(0.778) TCGA-E9-A244-01 12 248509 248509 C T IQSEC3 Silent p.N660N 0.21 TCGA-E9-A244-01 12 2786827 2786827 C T CACNA1C Intron 0.32 TCGA-E9-A244-01 12 50188850 50188850 C A NCKAP5L Silent p.L931L 0.43 TCGA-E9-A244-01 12 53169205 53169205 C T KRT76 Missense_Mutation p.S261N 0.38 tolerated(1) benign(0.071) TCGA-E9-A244-01 12 70970306 70970306 C G PTPRB Missense_Mutation p.G900R 0.11 tolerated(0.2) benign(0.389) TCGA-E9-A244-01 12 93100671 93100671 G A C12orf74 Silent p.L88L 0.35 TCGA-E9-A244-01 13 37574875 37574875 C G EXOSC8 5'UTR 0.16 TCGA-E9-A244-01 14 100174014 100174014 A T CYP46A1 Missense_Mutation p.K231M 0.11 tolerated(0.13) benign(0.24) TCGA-E9-A244-01 14 106967297 106967297 C A IGHV1-46 Missense_Mutation p.A35S 0.18 tolerated(0.3) benign(0.079) TCGA-E9-A244-01 14 20389216 20389216 G T OR4K5 Missense_Mutation p.V151L 0.15 tolerated(0.08) possibly_damaging(0.734) TCGA-E9-A244-01 14 20389219 20389219 A T OR4K5 Missense_Mutation p.S152C 0.15 deleterious(0) benign(0.131) TCGA-E9-A244-01 14 22591364 22591364 G A TRAV26-1 5'UTR 0.10 TCGA-E9-A244-01 14 60592455 60592455 A C PCNXL4 Missense_Mutation p.I827L 0.33 deleterious(0.01) possibly_damaging(0.756) TCGA-E9-A244-01 14 65267588 65267588 T G SPTB Splice_Site p.X255_splice 0.25 TCGA-E9-A244-01 14 95582139 95582139 G C DICER1 Missense_Mutation p.S591C 0.33 deleterious(0.01) possibly_damaging(0.653) TCGA-E9-A244-01 15 101910615 101910615 G T PCSK6 Nonsense_Mutation p.S548* 0.18 TCGA-E9-A244-01 15 30664509 30664509 A C CHRFAM7A Missense_Mutation p.C122G 0.56 deleterious(0.01) benign(0.095) TCGA-E9-A244-01 15 67462895 67462895 C A SMAD3 Missense_Mutation p.S204Y 0.13 tolerated(0.09) benign(0.089) TCGA-E9-A244-01 15 76191941 76191941 G C UBE2Q2 3'UTR 0.11 TCGA-E9-A244-01 16 1840820 1840820 C T IGFALS Silent p.L571L 0.28 TCGA-E9-A244-01 16 21221500 21221500 G A ZP2 Silent p.C55C 0.17 TCGA-E9-A244-01 16 30676043 30676043 C A FBRS Missense_Mutation p.D455E 0.13 benign(0.006) TCGA-E9-A244-01 16 30991415 30991415 C T SETD1A Silent p.D1436D 0.15 TCGA-E9-A244-01 16 49430575 49430575 G A C16orf78 Silent p.E212E 0.19 TCGA-E9-A244-01 16 58712260 58712260 C A SLC38A7 Missense_Mutation p.E196D 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-E9-A244-01 16 58712652 58712652 G A SLC38A7 Silent p.T139T 0.10 TCGA-E9-A244-01 17 3593780 3593780 C G P2RX5 Missense_Mutation p.L158F 0.36 deleterious(0.03) benign(0.128) TCGA-E9-A244-01 17 41020744 41020744 C T AOC4P RNA 0.56 TCGA-E9-A244-01 17 63533671 63533671 C T AXIN2 Missense_Mutation p.G495S 0.12 tolerated(0.25) benign(0.002) TCGA-E9-A244-01 17 74469974 74469974 C A RHBDF2 Nonsense_Mutation p.E558* 0.12 TCGA-E9-A244-01 17 74623249 74623249 C T ST6GALNAC1 Missense_Mutation p.G358R 0.23 benign(0.264) TCGA-E9-A244-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.63 tolerated(0.11) benign(0.308) TCGA-E9-A244-01 18 64239349 64239349 G A CDH19 Silent p.V31V 0.25 TCGA-E9-A244-01 18 72245522 72245522 G A CNDP1 Missense_Mutation p.R376H 0.17 deleterious(0.03) probably_damaging(0.965) TCGA-E9-A244-01 19 12384316 12384316 G A ZNF44 Missense_Mutation p.P300S 0.30 deleterious(0.04) benign(0.35) TCGA-E9-A244-01 19 19049542 19049542 C T HOMER3 Missense_Mutation p.A56T 0.15 tolerated(0.93) benign(0.018) TCGA-E9-A244-01 19 38806412 38806412 G C YIF1B Intron 0.24 TCGA-E9-A244-01 19 38979876 38979876 G T RYR1 Missense_Mutation p.E1869D 0.13 benign(0.25) TCGA-E9-A244-01 19 40357522 40357522 C T FCGBP Missense_Mutation p.R5264H 0.20 benign(0.273) TCGA-E9-A244-01 19 55952018 55952018 C T SHISA7 Silent p.T262T 0.11 TCGA-E9-A244-01 19 58319711 58319711 G T ZNF552 Missense_Mutation p.H307Q 0.19 tolerated(1) benign(0.007) TCGA-E9-A244-01 19 8808585 8808585 G C ACTL9 Missense_Mutation p.A156G 0.26 tolerated(0.06) benign(0.138) TCGA-E9-A244-01 19 9075348 9075348 C A MUC16 Missense_Mutation p.S4033I 0.22 unknown(0) TCGA-E9-A244-01 1 108918810 108918810 T C NBPF6 Intron 0.13 TCGA-E9-A244-01 1 120458436 120458436 G - NOTCH2 Frame_Shift_Del p.I2304Lfs*2 0.52 TCGA-E9-A244-01 1 149858119 149858119 C A HIST2H2BE Missense_Mutation p.K24N 0.09 deleterious_low_confidence(0.01) benign(0.067) TCGA-E9-A244-01 1 152080781 152080781 G A TCHH Missense_Mutation p.R1638C 0.37 unknown(0) TCGA-E9-A244-01 1 152081930 152081930 C T TCHH Missense_Mutation p.D1255N 0.15 unknown(0) TCGA-E9-A244-01 1 152595499 152595499 T G LCE3A Silent p.P27P 0.13 TCGA-E9-A244-01 1 153028749 153028749 C T SPRR2A 3'UTR 0.17 TCGA-E9-A244-01 1 156532441 156532441 T A IQGAP3 Missense_Mutation p.Q272L 0.15 tolerated(0.06) benign(0.002) TCGA-E9-A244-01 1 159273897 159273897 G A FCER1A Missense_Mutation p.E86K 0.24 tolerated(0.15) benign(0.034) TCGA-E9-A244-01 1 160011189 160011189 A G KCNJ10 Silent p.N378N 0.15 TCGA-E9-A244-01 1 160145985 160145985 C A ATP1A4 Silent p.P805P 0.21 TCGA-E9-A244-01 1 167778922 167778922 T G ADCY10 Missense_Mutation p.H1609P 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-E9-A244-01 1 176564589 176564589 C T PAPPA2 Missense_Mutation p.R617C 0.10 tolerated(0.15) possibly_damaging(0.667) TCGA-E9-A244-01 1 186023069 186023069 G A HMCN1 Silent p.A2271A 0.10 TCGA-E9-A244-01 1 190067723 190067723 A C BRINP3 Missense_Mutation p.F576V 0.21 deleterious(0) probably_damaging(0.991) TCGA-E9-A244-01 1 204379798 204379798 C G PPP1R15B Missense_Mutation p.V248L 0.11 deleterious(0.03) possibly_damaging(0.897) TCGA-E9-A244-01 1 248004426 248004426 A C OR11L1 Missense_Mutation p.M258R 0.08 deleterious(0) probably_damaging(0.999) TCGA-E9-A244-01 1 26644678 26644678 G T UBXN11 5'UTR 0.23 TCGA-E9-A244-01 1 34498201 34498201 A G CSMD2 Missense_Mutation p.Y131H 0.17 deleterious(0.01) benign(0.398) TCGA-E9-A244-01 1 40776400 40776400 T A COL9A2 Missense_Mutation p.I224F 0.15 deleterious(0.02) possibly_damaging(0.537) TCGA-E9-A244-01 20 44639885 44639885 C T MMP9 Silent p.D251D 0.31 TCGA-E9-A244-01 21 34939543 34939548 CATGAG - SON In_Frame_Del p.S2248_M2249del 0.19 TCGA-E9-A244-01 21 40191520 40191520 T A ETS2 Nonsense_Mutation p.L302* 0.16 TCGA-E9-A244-01 21 46925826 46925826 G C COL18A1 Silent p.V1234V 0.21 TCGA-E9-A244-01 22 18562666 18562666 G C PEX26 Missense_Mutation p.C86S 0.22 tolerated(0.06) probably_damaging(0.995) TCGA-E9-A244-01 22 37771398 37771398 G T ELFN2 Missense_Mutation p.D59E 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-E9-A244-01 22 38506575 38506575 G T BAIAP2L2 5'UTR 0.23 TCGA-E9-A244-01 22 39621808 39621808 G A PDGFB Missense_Mutation p.R216C 0.30 deleterious(0) possibly_damaging(0.79) TCGA-E9-A244-01 2 100017664 100017664 T C REV1 3'UTR 0.23 TCGA-E9-A244-01 2 153000517 153000517 T A STAM2 Missense_Mutation p.L176F 0.39 deleterious(0.02) probably_damaging(1) TCGA-E9-A244-01 2 202149905 202149905 C T CASP8 Missense_Mutation p.T449M 0.23 tolerated(0.15) benign(0.01) TCGA-E9-A244-01 2 219028937 219028937 C T CXCR1 Missense_Mutation p.R333H 0.13 tolerated(0.27) benign(0.02) TCGA-E9-A244-01 2 233244603 233244603 G T ALPP Missense_Mutation p.C205F 0.18 deleterious(0) probably_damaging(1) TCGA-E9-A244-01 2 29295725 29295725 T C C2orf71 Missense_Mutation p.H468R 0.20 tolerated(0.45) benign(0.015) TCGA-E9-A244-01 2 55252437 55252437 C G RTN4 Missense_Mutation p.S933T 0.23 tolerated(0.33) benign(0.005) TCGA-E9-A244-01 2 91805943 91805943 T C AC116050.1 Intron 0.46 TCGA-E9-A244-01 2 95775737 95775737 T C MRPS5 Silent p.G109G 0.37 TCGA-E9-A244-01 3 190986045 190986045 C G UTS2B 3'UTR 0.23 TCGA-E9-A244-01 3 193182727 193182727 A T ATP13A4 Splice_Site p.X487_splice 0.13 TCGA-E9-A244-01 3 194081730 194081730 C T LRRC15 Missense_Mutation p.A21T 0.19 deleterious(0.04) benign(0.014) TCGA-E9-A244-01 3 35725220 35725220 A G ARPP21 Silent p.S58S 0.46 TCGA-E9-A244-01 3 47164556 47164556 T G SETD2 Missense_Mutation p.N524H 0.24 tolerated_low_confidence(0.11) benign(0.001) TCGA-E9-A244-01 3 51263131 51263131 G C DOCK3 Missense_Mutation p.R435T 0.22 deleterious(0) probably_damaging(0.989) TCGA-E9-A244-01 4 186423435 186423435 C T PDLIM3 3'UTR 0.41 TCGA-E9-A244-01 4 52861775 52861775 A T LRRC66 Silent p.P471P 0.20 TCGA-E9-A244-01 5 140167566 140167566 C T PCDHA1 Missense_Mutation p.A564V 0.50 tolerated_low_confidence(0.26) benign(0.019) TCGA-E9-A244-01 5 150846797 150846797 G T SLC36A1 Nonsense_Mutation p.G153* 0.25 TCGA-E9-A244-01 5 256623 256623 C G SDHA 3'UTR 0.15 TCGA-E9-A244-01 5 485334 485334 C T SLC9A3 Missense_Mutation p.V230M 0.31 tolerated(0.25) probably_damaging(0.998) TCGA-E9-A244-01 6 108067977 108067977 C T SCML4 Missense_Mutation p.V135I 0.18 deleterious(0) possibly_damaging(0.449) TCGA-E9-A244-01 6 27775293 27775293 A G HIST1H2BL 3'UTR 0.06 TCGA-E9-A244-01 6 32188550 32188550 C A NOTCH4 Missense_Mutation p.C302F 0.30 deleterious(0) probably_damaging(0.999) TCGA-E9-A244-01 6 35213839 35213839 C T SCUBE3 Silent p.A906A 0.19 TCGA-E9-A244-01 6 56473334 56473334 G C DST Intron 0.36 TCGA-E9-A244-01 7 102119308 102119308 G A POLR2J 5'UTR 0.31 TCGA-E9-A244-01 7 75616520 75616547 GTGAAACTTGTGGTGCACAACCCTCAGG - POR 3'Flank 0.56 TCGA-E9-A244-01 7 8126035 8126035 C T GLCCI1 Missense_Mutation p.T504M 0.21 deleterious(0.04) possibly_damaging(0.736) TCGA-E9-A244-01 7 92122328 92122328 G C PEX1 Missense_Mutation p.A1049G 0.22 deleterious(0) benign(0.1) TCGA-E9-A244-01 7 98782623 98782623 C T KPNA7 Missense_Mutation p.G355R 0.17 deleterious(0) probably_damaging(1) TCGA-E9-A244-01 8 12956004 12956005 - T DLC1 Frame_Shift_Ins p.S1024Yfs*27 0.38 TCGA-E9-A244-01 8 144662368 144662368 A G EEF1D Silent p.D573D 0.18 TCGA-E9-A244-01 9 21186955 21186955 C G IFNA4 3'UTR 0.08 TCGA-E9-A244-01 X 150889973 150889973 G C FATE1 Missense_Mutation p.R114P 0.25 tolerated(0.12) benign(0.111) TCGA-E9-A245-01 11 1261520 1261520 C A MUC5B Silent p.I1295I 0.33 TCGA-E9-A245-01 11 22257763 22257763 T G ANO5 Missense_Mutation p.F235V 0.17 tolerated(0.22) benign(0.12) TCGA-E9-A245-01 11 95712588 95712588 A T MAML2 Missense_Mutation p.S999T 0.07 unknown(0) TCGA-E9-A245-01 12 111356978 111356982 TTCTT - MYL2 Frame_Shift_Del p.K7Efs*22 0.15 TCGA-E9-A245-01 14 55647930 55647930 C A DLGAP5 Splice_Site p.X194_splice 0.34 TCGA-E9-A245-01 14 93652791 93652791 C T RP11-371E8.4 Silent p.H57H 0.14 TCGA-E9-A245-01 18 34335233 34335233 C T FHOD3 Missense_Mutation p.H1287Y 0.09 tolerated(0.21) probably_damaging(0.911) TCGA-E9-A245-01 18 580977 580977 G A CETN1 3'UTR 0.45 TCGA-E9-A245-01 19 36218055 36218055 A G KMT2B Splice_Site p.X1335_splice 0.21 TCGA-E9-A245-01 19 54618005 54618005 A T TFPT Silent p.G33G 0.46 TCGA-E9-A245-01 1 12409220 12409220 G A VPS13D Splice_Site p.X3074_splice 0.35 TCGA-E9-A245-01 1 37948869 37948869 C G ZC3H12A Missense_Mutation p.A486G 0.46 tolerated(0.57) benign(0.039) TCGA-E9-A245-01 1 87031586 87031586 T G CLCA4 Silent p.S279S 0.43 TCGA-E9-A245-01 20 44258485 44258492 TCTCTGTG - WFDC10A Frame_Shift_Del p.L12Afs*11 0.47 TCGA-E9-A245-01 2 174777831 174777831 C A SP3 Missense_Mutation p.D666Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-E9-A245-01 2 37543547 37543547 A G PRKD3 Missense_Mutation p.S41P 0.14 deleterious_low_confidence(0.03) benign(0.006) TCGA-E9-A245-01 3 33110406 33110406 T C GLB1 Missense_Mutation p.D101G 0.20 tolerated(0.07) benign(0.12) TCGA-E9-A245-01 4 1698071 1698071 G A SLBP Nonsense_Mutation p.R163* 0.11 TCGA-E9-A245-01 4 71396753 71396753 C T AMTN Intron 0.24 TCGA-E9-A245-01 5 140236550 140236550 C T PCDHA10 Missense_Mutation p.A306V 0.65 tolerated_low_confidence(0.24) benign(0.014) TCGA-E9-A245-01 5 154320633 154320633 G T MRPL22 5'UTR 0.38 TCGA-E9-A245-01 5 71015730 71015732 GAA - CARTPT In_Frame_Del p.K63del 0.33 TCGA-E9-A245-01 8 139190894 139190894 T C FAM135B Missense_Mutation p.K305E 0.12 tolerated(0.07) possibly_damaging(0.621) TCGA-E9-A245-01 9 71509406 71509406 C T PIP5K1B Missense_Mutation p.T208M 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-E9-A245-01 X 117722171 117722171 G T DOCK11 Nonsense_Mutation p.E623* 0.42 TCGA-E9-A245-01 X 134155682 134155682 G T FAM127C 3'UTR 0.17 TCGA-E9-A247-01 10 17024557 17024557 G A CUBN Missense_Mutation p.R1541W 0.20 deleterious(0) probably_damaging(0.953) TCGA-E9-A247-01 10 27798830 27798830 C G RAB18 Missense_Mutation p.T32R 0.18 tolerated(0.05) benign(0.112) TCGA-E9-A247-01 10 49448466 49448466 G A FRMPD2 Silent p.L213L 0.17 TCGA-E9-A247-01 10 73111493 73111496 CTAC - SLC29A3 Frame_Shift_Del p.I186Mfs*3 0.50 TCGA-E9-A247-01 11 101951992 101951992 G A C11orf70 Missense_Mutation p.V219I 0.62 tolerated(0.17) benign(0.074) TCGA-E9-A247-01 11 110134798 110134798 C T RDX Silent p.P118P 0.40 TCGA-E9-A247-01 11 56258125 56258125 C A OR5M8 Missense_Mutation p.G241V 0.16 deleterious(0.02) possibly_damaging(0.558) TCGA-E9-A247-01 11 9042630 9042630 G A SCUBE2 Missense_Mutation p.R960C 0.09 deleterious(0) probably_damaging(0.999) TCGA-E9-A247-01 12 133250274 133250274 A G POLE Missense_Mutation p.Y416H 0.30 deleterious(0) probably_damaging(1) TCGA-E9-A247-01 12 22086768 22086768 C T ABCC9 Missense_Mutation p.A78T 0.41 tolerated(0.33) benign(0.001) TCGA-E9-A247-01 13 39261493 39261493 C G FREM2 Silent p.A4A 0.46 TCGA-E9-A247-01 14 100182235 100182235 G A CYP46A1 Missense_Mutation p.R261H 0.23 deleterious(0) probably_damaging(1) TCGA-E9-A247-01 14 36005145 36005145 C A INSM2 Silent p.R563R 0.50 TCGA-E9-A247-01 15 23890848 23890848 G A MAGEL2 Missense_Mutation p.P78L 0.25 deleterious_low_confidence(0) benign(0.017) TCGA-E9-A247-01 16 15155599 15155599 C T RRN3 3'UTR 0.24 TCGA-E9-A247-01 16 20802184 20802184 T G ACSM3 Intron 0.14 TCGA-E9-A247-01 16 2336775 2336775 G A ABCA3 Silent p.C1066C 0.46 TCGA-E9-A247-01 17 39296499 39296499 G A KRTAP4-6 Missense_Mutation p.R81C 0.12 deleterious(0.01) unknown(0) TCGA-E9-A247-01 17 48755286 48755286 C G ABCC3 Missense_Mutation p.P1187R 0.16 deleterious(0) possibly_damaging(0.878) TCGA-E9-A247-01 18 67684825 67684825 T C RTTN Missense_Mutation p.K2080R 0.26 tolerated(0.16) probably_damaging(0.997) TCGA-E9-A247-01 19 10426135 10426135 C A FDX1L Missense_Mutation p.Q78H 0.11 deleterious(0.03) benign(0.1) TCGA-E9-A247-01 19 3619155 3619155 C T CACTIN Missense_Mutation p.V324M 0.33 tolerated(0.12) probably_damaging(0.998) TCGA-E9-A247-01 19 46303713 46303713 G A RSPH6A Missense_Mutation p.A636V 0.12 deleterious(0.03) possibly_damaging(0.823) TCGA-E9-A247-01 19 49632226 49632226 C T PPFIA3 Missense_Mutation p.A155V 0.29 deleterious(0) probably_damaging(0.998) TCGA-E9-A247-01 1 147091300 147091300 C T BCL9 Missense_Mutation p.P447S 0.75 tolerated(0.58) benign(0.09) TCGA-E9-A247-01 1 216591941 216591941 C T USH2A Missense_Mutation p.R189H 0.21 benign(0.117) TCGA-E9-A247-01 1 247463812 247463812 C T ZNF496 3'UTR 0.61 TCGA-E9-A247-01 1 6640763 6640763 G T ZBTB48 Missense_Mutation p.V32L 0.28 tolerated(0.11) probably_damaging(0.995) TCGA-E9-A247-01 20 43723698 43723698 C T KCNS1 Missense_Mutation p.R465Q 0.17 tolerated(0.46) benign(0.042) TCGA-E9-A247-01 2 101656749 101656749 G A TBC1D8 Missense_Mutation p.T309M 0.47 deleterious(0) probably_damaging(0.994) TCGA-E9-A247-01 2 179611371 179611371 C G TTN Intron 0.24 TCGA-E9-A247-01 3 113049172 113049172 C T WDR52 Missense_Mutation p.R1320H 0.79 deleterious(0.02) possibly_damaging(0.898) TCGA-E9-A247-01 3 138121158 138121158 G A MRAS 3'UTR 1.00 TCGA-E9-A247-01 4 114257194 114257194 G A ANK2 Missense_Mutation p.R1191Q 0.14 probably_damaging(0.991) TCGA-E9-A247-01 4 23815386 23815386 G A PPARGC1A Nonsense_Mutation p.R574* 0.12 TCGA-E9-A247-01 5 140866811 140866811 C G PCDHGC4 Missense_Mutation p.L691V 0.16 deleterious(0.03) possibly_damaging(0.562) TCGA-E9-A247-01 5 79035212 79035212 A G CMYA5 Missense_Mutation p.I3542V 0.39 benign(0.362) TCGA-E9-A247-01 6 168464411 168464411 T C FRMD1 Missense_Mutation p.Y225C 0.27 deleterious(0) probably_damaging(0.988) TCGA-E9-A247-01 6 26250661 26250661 G A HIST1H3F Missense_Mutation p.S58L 0.24 deleterious_low_confidence(0) possibly_damaging(0.463) TCGA-E9-A247-01 6 50011380 50011380 C T DEFB112 Missense_Mutation p.V84M 0.22 tolerated(1) benign(0.011) TCGA-E9-A247-01 7 150555045 150555045 G A AOC1 Missense_Mutation p.R496H 0.15 tolerated(0.31) benign(0.004) TCGA-E9-A247-01 7 30490872 30490872 G A NOD1 Missense_Mutation p.R721W 0.05 deleterious(0) benign(0.427) TCGA-E9-A247-01 8 21996508 21996508 C T REEP4 Missense_Mutation p.A162T 0.30 tolerated(0.44) benign(0.001) TCGA-E9-A247-01 8 3081256 3081256 G T CSMD1 Missense_Mutation p.F1493L 0.23 benign(0.026) TCGA-E9-A247-01 8 38173482 38173482 G C WHSC1L1 Nonsense_Mutation p.S645* 0.59 TCGA-E9-A247-01 8 41530366 41530366 C T ANK1 Silent p.P1575P 0.60 TCGA-E9-A247-01 X 84634256 84634256 G T POF1B Silent p.P68P 0.36 TCGA-E9-A247-01 X 99942108 99942108 G A SYTL4 Silent p.C380C 0.28 TCGA-E9-A248-01 10 32558007 32558007 G A EPC1 Missense_Mutation p.A832V 0.14 tolerated(0.07) probably_damaging(0.989) TCGA-E9-A248-01 10 69407277 69407277 C A CTNNA3 Splice_Site 0.07 TCGA-E9-A248-01 10 94234712 94234712 G A IDE Nonsense_Mutation p.R668* 0.10 TCGA-E9-A248-01 11 58979086 58979086 G A MPEG1 Missense_Mutation p.P418L 0.12 deleterious(0.02) benign(0.013) TCGA-E9-A248-01 12 20903620 20903620 G A SLCO1C1 Missense_Mutation p.A604T 0.10 deleterious(0.01) possibly_damaging(0.745) TCGA-E9-A248-01 13 113512220 113512220 C T ATP11A Missense_Mutation p.A836V 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-E9-A248-01 14 51243678 51243678 C A NIN Missense_Mutation p.V219L 0.19 tolerated(0.38) benign(0.074) TCGA-E9-A248-01 15 45007801 45007801 A T B2M Missense_Mutation p.Y83F 0.20 deleterious(0.02) probably_damaging(0.967) TCGA-E9-A248-01 17 3119768 3119768 C T OR1A1 Missense_Mutation p.P285L 0.18 deleterious(0.01) benign(0.157) TCGA-E9-A248-01 17 41165618 41165618 C T IFI35 Silent p.G169G 0.14 TCGA-E9-A248-01 17 48818484 48818484 C - LUC7L3 Frame_Shift_Del p.F76Lfs*2 0.25 TCGA-E9-A248-01 17 7579344 7579344 G - TP53 Frame_Shift_Del p.H115Ifs*8 0.23 TCGA-E9-A248-01 19 15905039 15905039 C A OR10H5 Missense_Mutation p.L61I 0.09 tolerated(0.09) possibly_damaging(0.493) TCGA-E9-A248-01 19 45202371 45202371 C T CEACAM16 5'Flank 0.14 TCGA-E9-A248-01 19 6712375 6712375 G C C3 Missense_Mutation p.P388A 0.15 tolerated(0.06) benign(0.058) TCGA-E9-A248-01 1 158651410 158651410 C T SPTA1 Silent p.L146L 0.11 TCGA-E9-A248-01 1 225230754 225230754 A - DNAH14 Frame_Shift_Del p.E588Dfs*42 0.15 TCGA-E9-A248-01 20 9417764 9417764 C T PLCB4 Missense_Mutation p.T898M 0.18 tolerated(0.07) possibly_damaging(0.747) TCGA-E9-A248-01 2 228680193 228680193 C T CCL20 Missense_Mutation p.L34F 0.09 deleterious(0) probably_damaging(0.961) TCGA-E9-A248-01 3 190366258 190366258 C A IL1RAP Intron 0.11 TCGA-E9-A248-01 4 151935687 151935687 T C LRBA Silent p.K36K 0.11 TCGA-E9-A248-01 5 67589587 67589619 TGAATATAACACTCAGTTTCAAGAAAAAAGTCG - PIK3R1 In_Frame_Del p.H450_R461delinsQ 0.15 TCGA-E9-A248-01 6 116288883 116288883 C A FRK Splice_Site p.X211_splice 0.05 TCGA-E9-A248-01 6 33423544 33423544 G A ZBTB9 Missense_Mutation p.D223N 0.22 tolerated(0.09) benign(0.051) TCGA-E9-A248-01 7 100856163 100856163 C G PLOD3 Missense_Mutation p.G280A 0.24 tolerated(0.77) benign(0.003) TCGA-E9-A248-01 7 146825878 146825878 G A CNTNAP2 Missense_Mutation p.V345I 0.13 tolerated(0.34) benign(0.008) TCGA-E9-A248-01 8 116616406 116616406 G A TRPS1 Missense_Mutation p.P597L 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-E9-A248-01 8 39022591 39022591 G A ADAM32 Missense_Mutation p.E237K 0.14 deleterious(0) probably_damaging(0.989) TCGA-E9-A248-01 8 39022639 39022639 G A ADAM32 Missense_Mutation p.E253K 0.17 deleterious(0) probably_damaging(0.994) TCGA-E9-A248-01 8 39022660 39022665 GAATGG CAATA ADAM32 Frame_Shift_Del p.E260Qfs*2 0.08 TCGA-E9-A248-01 8 67577747 67577747 C G VCPIP1 Missense_Mutation p.E483Q 0.07 deleterious(0.02) possibly_damaging(0.849) TCGA-E9-A248-01 9 131221854 131221854 C T ODF2 Missense_Mutation p.S14L 0.13 tolerated_low_confidence(0.1) benign(0.071) TCGA-E9-A248-01 9 15779036 15779036 G A CCDC171 Missense_Mutation p.R990H 0.10 deleterious(0) possibly_damaging(0.852) TCGA-E9-A249-01 10 37520502 37520503 - A ANKRD30A 3'UTR 0.32 TCGA-E9-A249-01 10 75279643 75279643 G A USP54 Missense_Mutation p.R864C 0.26 deleterious(0) possibly_damaging(0.863) TCGA-E9-A249-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.33 TCGA-E9-A249-01 11 118919513 118919513 C G HYOU1 Missense_Mutation p.R693P 0.40 tolerated(0.28) benign(0.032) TCGA-E9-A249-01 11 17408781 17408781 G T KCNJ11 Silent p.I286I 0.40 TCGA-E9-A249-01 11 57076056 57076056 C T TNKS1BP1 Missense_Mutation p.G1377S 0.45 tolerated(0.1) benign(0.084) TCGA-E9-A249-01 11 6942870 6942870 T A OR2D3 Missense_Mutation p.M213K 0.20 deleterious(0.02) benign(0.117) TCGA-E9-A249-01 12 29523070 29523070 G A ERGIC2 Silent p.Y64Y 0.15 TCGA-E9-A249-01 12 4599010 4599010 C T C12orf4 Missense_Mutation p.R541Q 0.05 deleterious(0) probably_damaging(1) TCGA-E9-A249-01 15 25585293 25585303 GTGCTCTGTCT - UBE3A Frame_Shift_Del p.D813Cfs*29 0.28 TCGA-E9-A249-01 16 1575899 1575899 C A IFT140 Silent p.R919R 0.52 TCGA-E9-A249-01 17 62018736 62018736 C T SCN4A Missense_Mutation p.A1636T 0.38 tolerated(0.18) benign(0.002) TCGA-E9-A249-01 19 13065088 13065088 C T GADD45GIP1 Silent p.A201A 0.10 TCGA-E9-A249-01 19 48517566 48517566 G T ELSPBP1 Splice_Site p.X70_splice 0.29 TCGA-E9-A249-01 19 55495082 55495082 C T NLRP2 Silent p.D672D 0.35 TCGA-E9-A249-01 1 34052731 34052731 G T CSMD2 Silent p.L2300L 0.18 TCGA-E9-A249-01 2 174232489 174232489 T A CDCA7 3'UTR 0.42 TCGA-E9-A249-01 3 109128927 109128927 G A RP11-702L6.4 RNA 0.48 TCGA-E9-A249-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.32 deleterious(0.02) probably_damaging(0.959) TCGA-E9-A249-01 4 164393086 164393086 T C TKTL2 Missense_Mutation p.K601E 0.11 tolerated(0.09) benign(0.286) TCGA-E9-A249-01 4 39236448 39236448 C A WDR19 Missense_Mutation p.D772E 0.14 tolerated(0.78) benign(0.002) TCGA-E9-A249-01 5 140481775 140481775 T C PCDHB3 Silent p.F514F 0.14 TCGA-E9-A249-01 6 134350571 134350571 G A SLC2A12 Missense_Mutation p.T131M 0.06 tolerated(0.25) benign(0.042) TCGA-E9-A249-01 8 143994109 143994109 C T CYP11B2 Missense_Mutation p.R412H 0.42 deleterious(0) benign(0.347) TCGA-E9-A249-01 8 2020571 2020571 G A MYOM2 Missense_Mutation p.A314T 0.30 tolerated(0.22) possibly_damaging(0.487) TCGA-E9-A249-01 X 12157067 12157067 G A FRMPD4 5'UTR 0.07 TCGA-E9-A249-01 X 140271018 140271018 C A LDOC1 Silent p.R63R 0.31 TCGA-E9-A249-01 X 3229027 3229027 T C MXRA5 Missense_Mutation p.Q2406R 0.33 tolerated(0.28) benign(0.246) TCGA-E9-A24A-01 13 109704802 109704802 G T MYO16 Missense_Mutation p.K987N 0.18 deleterious(0.02) possibly_damaging(0.857) TCGA-E9-A24A-01 15 55677882 55677882 T A CCPG1 Missense_Mutation p.T31S 0.26 tolerated(0.36) benign(0.209) TCGA-E9-A24A-01 17 11603195 11603195 G A DNAH9 Missense_Mutation p.G1674R 0.33 probably_damaging(0.998) TCGA-E9-A24A-01 17 20163560 20163560 C A SPECC1 Missense_Mutation p.R965S 0.20 deleterious(0) probably_damaging(0.999) TCGA-E9-A24A-01 17 66925316 66925316 G A ABCA8 Silent p.V333V 0.21 TCGA-E9-A24A-01 19 1362249 1362249 A G MUM1 Missense_Mutation p.E372G 0.29 tolerated(0.19) benign(0) TCGA-E9-A24A-01 19 48522988 48522988 A T ELSPBP1 Missense_Mutation p.N123I 0.40 deleterious(0) probably_damaging(0.942) TCGA-E9-A24A-01 1 223567541 223567541 G A C1orf65 Missense_Mutation p.V242I 0.26 tolerated(0.91) benign(0.005) TCGA-E9-A24A-01 3 191047486 191047486 A T CCDC50 Missense_Mutation p.Q8L 0.33 deleterious(0.02) benign(0.028) TCGA-E9-A24A-01 3 42730193 42730193 G A KLHL40 Missense_Mutation p.G469S 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-E9-A24A-01 4 103730974 103730974 A C UBE2D3 Missense_Mutation p.C23W 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.636) TCGA-E9-A24A-01 4 20541090 20541090 G T SLIT2 Missense_Mutation p.C620F 0.26 deleterious(0) probably_damaging(0.999) TCGA-E9-A24A-01 4 88584083 88584083 G A DMP1 Missense_Mutation p.E385K 0.23 deleterious(0.01) probably_damaging(0.974) TCGA-E9-A24A-01 5 140744030 140744030 G A PCDHGA5 Missense_Mutation p.V45I 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-E9-A24A-01 5 179565110 179565110 G C RASGEF1C 5'UTR 0.25 TCGA-E9-A24A-01 6 134323224 134323225 - A SLC2A12 Frame_Shift_Ins p.M537Ifs*15 0.32 TCGA-E9-A24A-01 6 29323445 29323445 G T OR5V1 Nonsense_Mutation p.Y176* 0.29 TCGA-E9-A24A-01 6 80222980 80222980 C A LCA5 Missense_Mutation p.K223N 0.30 deleterious(0) probably_damaging(0.983) TCGA-E9-A24A-01 8 125555378 125555378 A G NDUFB9 Missense_Mutation p.H51R 0.28 deleterious(0.05) possibly_damaging(0.694) TCGA-E9-A24A-01 9 111734985 111734985 T A CTNNAL1 Missense_Mutation p.K439N 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-E9-A24A-01 9 128001333 128001333 C - HSPA5 Frame_Shift_Del p.A295Pfs*28 0.26 TCGA-E9-A24A-01 9 136384005 136384005 C T TMEM8C Silent p.A130A 0.28 TCGA-E9-A24A-01 9 139753216 139753216 G A MAMDC4 Missense_Mutation p.R956Q 0.25 tolerated(0.16) benign(0.049) TCGA-E9-A24A-01 X 153043072 153043072 C A PLXNB3 Missense_Mutation p.D1753E 0.27 deleterious(0) probably_damaging(1) TCGA-E9-A295-01 10 105361910 105361910 C T SH3PXD2A Missense_Mutation p.R994H 0.20 tolerated(0.08) possibly_damaging(0.859) TCGA-E9-A295-01 10 127677132 127677132 G A FANK1 Silent p.T68T 0.08 TCGA-E9-A295-01 10 58119605 58119605 G T ZWINT Missense_Mutation p.A89E 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-E9-A295-01 11 117109661 117109661 A C RNF214 Missense_Mutation p.E151A 0.33 tolerated_low_confidence(0.3) benign(0.003) TCGA-E9-A295-01 11 43345142 43345142 G C API5 Missense_Mutation p.D236H 0.14 tolerated(0.06) possibly_damaging(0.856) TCGA-E9-A295-01 11 44130752 44130752 G A EXT2 Missense_Mutation p.R215Q 0.11 tolerated(0.35) benign(0.005) TCGA-E9-A295-01 11 48175418 48175418 G A PTPRJ Missense_Mutation p.R1070H 0.15 deleterious(0) probably_damaging(1) TCGA-E9-A295-01 11 51515861 51515861 G T OR4C46 Nonsense_Mutation p.E194* 0.32 TCGA-E9-A295-01 11 60064764 60064764 T C MS4A4A Missense_Mutation p.V99A 0.10 tolerated(0.12) benign(0.072) TCGA-E9-A295-01 11 77702202 77702202 C T INTS4 Silent p.A66A 0.20 TCGA-E9-A295-01 11 9202357 9202357 C T DENND5A Missense_Mutation p.R471Q 0.41 deleterious(0.05) possibly_damaging(0.581) TCGA-E9-A295-01 12 117426610 117426610 A C FBXW8 Missense_Mutation p.D392A 0.19 deleterious(0) probably_damaging(0.992) TCGA-E9-A295-01 12 117662851 117662851 G T NOS1 Missense_Mutation p.Q1300K 0.17 deleterious(0.01) probably_damaging(1) TCGA-E9-A295-01 12 128900064 128900064 C T TMEM132C Silent p.N291N 0.20 TCGA-E9-A295-01 12 41966546 41966546 T A PDZRN4 Missense_Mutation p.N655K 0.14 tolerated(0.05) benign(0.155) TCGA-E9-A295-01 12 48596743 48596743 G A OR10AD1 Silent p.A111A 0.14 TCGA-E9-A295-01 12 51108327 51108327 G C DIP2B Missense_Mutation p.M933I 0.14 deleterious(0.01) benign(0.141) TCGA-E9-A295-01 12 52714811 52714811 G A KRT83 Silent p.N103N 0.20 TCGA-E9-A295-01 12 8814696 8814696 G A MFAP5 Missense_Mutation p.S2L 0.13 tolerated(1) benign(0.001) TCGA-E9-A295-01 13 35716469 35716469 G T NBEA Missense_Mutation p.L800F 0.23 deleterious(0) possibly_damaging(0.517) TCGA-E9-A295-01 13 49884919 49884919 C T CAB39L 3'UTR 0.51 TCGA-E9-A295-01 15 25953412 25953412 T C ATP10A Missense_Mutation p.S794G 0.14 tolerated(0.2) benign(0.073) TCGA-E9-A295-01 15 27017602 27017602 C A GABRB3 Missense_Mutation p.V63L 0.44 tolerated(0.1) possibly_damaging(0.501) TCGA-E9-A295-01 15 34646055 34646055 G C NUTM1 Missense_Mutation p.E325Q 0.16 deleterious(0.04) probably_damaging(0.953) TCGA-E9-A295-01 15 52402025 52402025 C T BCL2L10 3'UTR 0.16 TCGA-E9-A295-01 15 59931262 59931262 C A GTF2A2 3'UTR 0.33 TCGA-E9-A295-01 15 71175114 71175114 C T THAP10 Missense_Mutation p.R188H 0.24 tolerated(0.35) benign(0.001) TCGA-E9-A295-01 16 17202698 17202698 C T XYLT1 Missense_Mutation p.G912R 0.21 tolerated(0.21) benign(0.014) TCGA-E9-A295-01 16 18810156 18810156 C G ARL6IP1 Missense_Mutation p.A13P 0.11 tolerated(0.07) possibly_damaging(0.758) TCGA-E9-A295-01 16 22334221 22334221 C A POLR3E Missense_Mutation p.A346D 0.07 deleterious(0) probably_damaging(0.985) TCGA-E9-A295-01 16 31926615 31926615 C G ZNF267 Missense_Mutation p.P349A 0.39 deleterious(0.03) benign(0) TCGA-E9-A295-01 17 11622762 11622762 C A DNAH9 Silent p.G1888G 0.18 TCGA-E9-A295-01 17 58503220 58503220 G T C17orf64 Missense_Mutation p.G43V 0.18 deleterious(0) probably_damaging(1) TCGA-E9-A295-01 17 65074605 65074605 G A HELZ Silent p.G1864G 0.23 TCGA-E9-A295-01 17 65689056 65689056 T G PITPNC1 3'UTR 0.25 TCGA-E9-A295-01 17 67031525 67031525 A - ABCA9 Frame_Shift_Del p.T331Rfs*54 0.19 TCGA-E9-A295-01 17 9774137 9774137 G C GLP2R Missense_Mutation p.R377T 0.26 tolerated(0.68) benign(0.041) TCGA-E9-A295-01 18 49867049 49867049 C A DCC 5'UTR 0.21 TCGA-E9-A295-01 19 10943683 10943683 C T TMED1 Silent p.P224P 0.44 TCGA-E9-A295-01 19 40521668 40521668 G T ZNF546 Nonsense_Mutation p.E831* 0.29 TCGA-E9-A295-01 19 52919654 52919654 G T ZNF528 Nonsense_Mutation p.G517* 0.14 TCGA-E9-A295-01 19 6534816 6534816 G T TNFSF9 Missense_Mutation p.Q168H 0.18 tolerated(0.06) probably_damaging(0.961) TCGA-E9-A295-01 1 12837483 12837483 G A PRAMEF12 Missense_Mutation p.R398H 0.34 tolerated(0.4) probably_damaging(0.984) TCGA-E9-A295-01 1 177929522 177929522 G T SEC16B Missense_Mutation p.S318Y 0.19 deleterious(0.01) possibly_damaging(0.845) TCGA-E9-A295-01 1 200944041 200944041 G T KIF21B Missense_Mutation p.Q1539K 0.36 deleterious(0.01) benign(0.223) TCGA-E9-A295-01 1 207791576 207791576 G A CR1 Silent p.L2350L 0.10 TCGA-E9-A295-01 1 225686046 225686046 T C ENAH Intron 0.13 TCGA-E9-A295-01 1 228482539 228482539 G A OBSCN Silent p.T4247T 0.27 TCGA-E9-A295-01 1 248262934 248262934 C A OR2L13 Missense_Mutation p.S86Y 0.14 tolerated(0.59) possibly_damaging(0.895) TCGA-E9-A295-01 1 62673207 62673207 G T L1TD1 Missense_Mutation p.A303S 0.29 tolerated(0.12) unknown(0) TCGA-E9-A295-01 20 30232760 30232760 C A COX4I2 3'UTR 0.12 TCGA-E9-A295-01 20 35236207 35236207 C T C20orf24 Silent p.F68F 0.14 TCGA-E9-A295-01 20 52786155 52786155 C A CYP24A1 Nonsense_Mutation p.E206* 0.13 TCGA-E9-A295-01 20 61870925 61870925 G A BIRC7 Missense_Mutation p.V289I 0.21 tolerated(1) benign(0.01) TCGA-E9-A295-01 22 29195125 29195126 CT - XBP1 Frame_Shift_Del p.R81Sfs*16 0.32 TCGA-E9-A295-01 22 45749989 45749989 C A SMC1B Missense_Mutation p.A1048S 0.05 tolerated(0.07) possibly_damaging(0.891) TCGA-E9-A295-01 2 101650087 101650087 G C TBC1D8 Missense_Mutation p.F564L 0.14 deleterious(0) probably_damaging(0.999) TCGA-E9-A295-01 2 135107444 135107444 C T MGAT5 Missense_Mutation p.S394L 0.15 tolerated(0.86) benign(0.002) TCGA-E9-A295-01 2 167163024 167163024 C T SCN9A Missense_Mutation p.V155I 0.21 tolerated(0.17) benign(0.271) TCGA-E9-A295-01 2 168104572 168104572 G T XIRP2 Nonsense_Mutation p.E2224* 0.15 TCGA-E9-A295-01 2 179604866 179604866 G T TTN Missense_Mutation p.A4365E 0.12 TCGA-E9-A295-01 2 20145695 20145695 G C WDR35 Missense_Mutation p.T577R 0.17 tolerated(0.31) possibly_damaging(0.506) TCGA-E9-A295-01 2 79347943 79347943 G T REG1A Intron 0.19 TCGA-E9-A295-01 2 85617353 85617353 G A ELMOD3 Missense_Mutation p.R303Q 0.31 tolerated(1) benign(0.004) TCGA-E9-A295-01 2 90121682 90121682 C A IGKV1D-17 Missense_Mutation p.L9I 0.13 deleterious(0.04) benign(0.436) TCGA-E9-A295-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.58 tolerated(0.44) benign(0.085) TCGA-E9-A295-01 3 195486130 195486130 G T MUC4 Missense_Mutation p.Q4951K 0.46 benign(0.002) TCGA-E9-A295-01 3 196547338 196547338 G A PAK2 Missense_Mutation p.R417Q 0.21 tolerated(0.11) probably_damaging(0.965) TCGA-E9-A295-01 3 57132299 57132299 C T IL17RD Missense_Mutation p.V478I 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-E9-A295-01 3 71027086 71027087 AG - FOXP1 Frame_Shift_Del p.L416Dfs*46 0.33 TCGA-E9-A295-01 4 155533233 155533233 C A FGG Nonsense_Mutation p.E82* 0.17 TCGA-E9-A295-01 4 186577799 186577799 C A SORBS2 Intron 0.22 TCGA-E9-A295-01 5 132432906 132432906 C T HSPA4 Silent p.N619N 0.10 TCGA-E9-A295-01 5 140256484 140256484 C T PCDHA12 Missense_Mutation p.T476M 0.08 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-E9-A295-01 5 140347369 140347369 C T PCDHAC2 Missense_Mutation p.R340W 0.11 deleterious(0) possibly_damaging(0.719) TCGA-E9-A295-01 5 140563164 140563164 C A PCDHB16 Missense_Mutation p.P344T 0.09 tolerated_low_confidence(0.08) benign(0.006) TCGA-E9-A295-01 5 140589271 140589271 C T PCDHB12 Silent p.V264V 0.19 TCGA-E9-A295-01 5 148702277 148702277 T C AFAP1L1 Missense_Mutation p.S603P 0.57 deleterious(0) probably_damaging(0.998) TCGA-E9-A295-01 5 150029446 150029446 G T SYNPO Missense_Mutation p.A781S 0.24 tolerated(0.3) probably_damaging(0.967) TCGA-E9-A295-01 6 10749432 10749432 C T TMEM14B Intron 0.28 TCGA-E9-A295-01 6 144033228 144033228 G T PHACTR2 Missense_Mutation p.R41I 0.20 deleterious(0) probably_damaging(0.999) TCGA-E9-A295-01 6 161510422 161510422 G A MAP3K4 Silent p.Q964Q 0.19 TCGA-E9-A295-01 6 161575278 161575278 A G AGPAT4 Missense_Mutation p.F138S 0.25 deleterious(0) probably_damaging(0.987) TCGA-E9-A295-01 6 161771035 161771035 C T PARK2 3'UTR 0.44 TCGA-E9-A295-01 6 37349063 37349063 T C RNF8 Silent p.N458N 0.20 TCGA-E9-A295-01 6 43019030 43019030 C G CUL7 Silent p.L387L 0.17 TCGA-E9-A295-01 7 24932216 24932216 G T OSBPL3 5'UTR 0.18 TCGA-E9-A295-01 7 69364341 69364341 G T AUTS2 Nonsense_Mutation p.E127* 0.29 TCGA-E9-A295-01 7 70252256 70252256 C T AUTS2 Silent p.H790H 0.14 TCGA-E9-A295-01 8 116426722 116426722 C A TRPS1 Silent p.P1138P 0.13 TCGA-E9-A295-01 8 11704610 11704610 G - CTSB Frame_Shift_Del p.V249Wfs*26 0.19 TCGA-E9-A295-01 8 120233832 120233832 C T MAL2 Silent p.F46F 0.09 TCGA-E9-A295-01 8 132051949 132051949 G T ADCY8 Missense_Mutation p.L211I 0.24 tolerated(0.47) benign(0.004) TCGA-E9-A295-01 8 143866833 143866833 G A LY6D Missense_Mutation p.A64V 0.10 tolerated(1) benign(0.005) TCGA-E9-A295-01 8 145948581 145948581 A G ZNF251 Missense_Mutation p.L155S 0.45 tolerated(0.22) possibly_damaging(0.587) TCGA-E9-A295-01 8 39695695 39695695 C T ADAM2 Missense_Mutation p.V4I 0.11 tolerated(0.3) benign(0.001) TCGA-E9-A295-01 8 41166547 41166547 G T SFRP1 Silent p.G44G 0.30 TCGA-E9-A295-01 8 72975799 72975799 T C TRPA1 Missense_Mutation p.K187R 0.11 tolerated(0.6) benign(0.015) TCGA-E9-A295-01 9 73152199 73152199 G A TRPM3 Missense_Mutation p.T1265M 0.19 deleterious(0.02) benign(0.391) TCGA-E9-A295-01 X 101096303 101096303 C A NXF5 Splice_Site p.X108_splice 0.09 TCGA-E9-A295-01 X 111019782 111019782 C A TRPC5 Missense_Mutation p.C894F 0.10 tolerated_low_confidence(0.28) benign(0.034) TCGA-E9-A295-01 X 114871273 114871273 T A PLS3 Missense_Mutation p.F292I 0.09 deleterious(0) possibly_damaging(0.897) TCGA-E9-A295-01 X 134988302 134988302 G T SAGE1 Missense_Mutation p.A192S 0.18 tolerated(0.79) probably_damaging(0.994) TCGA-E9-A295-01 X 135750295 135750295 C T ARHGEF6 Missense_Mutation p.E742K 0.11 deleterious(0) possibly_damaging(0.564) TCGA-E9-A295-01 X 151900425 151900425 C A MAGEA12 Missense_Mutation p.A126S 0.08 tolerated(0.12) benign(0.11) TCGA-E9-A295-01 X 152991469 152991469 G A ABCD1 Missense_Mutation p.V250M 0.33 deleterious(0.02) probably_damaging(0.922) TCGA-E9-A295-01 X 1585028 1585028 C A P2RY8 Missense_Mutation p.A142S 0.28 deleterious(0.05) benign(0.438) TCGA-E9-A295-01 X 21887782 21887782 G A MBTPS2 Missense_Mutation p.S319N 0.15 tolerated(0.41) benign(0.029) TCGA-E9-A295-01 X 32716093 32716093 C A DMD Missense_Mutation p.G285V 0.14 probably_damaging(0.996) TCGA-E9-A295-01 X 35989890 35989890 G C CXorf22 Splice_Site p.X719_splice 0.17 TCGA-E9-A295-01 X 5811039 5811039 G T NLGN4X Missense_Mutation p.P757Q 0.18 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-E9-A295-01 X 69495995 69495995 C T ARR3 Missense_Mutation p.T70M 0.10 deleterious(0) benign(0.212) TCGA-E9-A295-01 X 69647280 69647280 G A GDPD2 Silent p.L301L 0.09 TCGA-E9-A2JS-01 10 30605071 30605072 - T MTPAP Frame_Shift_Ins p.P430Tfs*17 0.25 TCGA-E9-A2JS-01 11 118502193 118502193 G T PHLDB1 Missense_Mutation p.Q699H 0.67 tolerated(0.33) benign(0.162) TCGA-E9-A2JS-01 11 130068454 130068454 G T ST14 Missense_Mutation p.S541I 0.50 deleterious(0.04) possibly_damaging(0.774) TCGA-E9-A2JS-01 11 19372318 19372318 C T NAV2 5'UTR 0.62 TCGA-E9-A2JS-01 11 46407681 46407681 G A CHRM4 Missense_Mutation p.R143W 0.25 deleterious(0) benign(0.427) TCGA-E9-A2JS-01 11 494574 494574 G T RNH1 3'UTR 0.25 TCGA-E9-A2JS-01 11 51411541 51411541 C T OR4A5 Silent p.T285T 0.20 TCGA-E9-A2JS-01 11 6585602 6585602 C T DNHD1 Missense_Mutation p.L3442F 0.38 probably_damaging(0.995) TCGA-E9-A2JS-01 12 113715121 113715121 G A TPCN1 Missense_Mutation p.R451H 0.15 tolerated(0.55) possibly_damaging(0.462) TCGA-E9-A2JS-01 12 27944828 27944828 A G KLHL42 Missense_Mutation p.T354A 0.20 tolerated(0.4) benign(0.003) TCGA-E9-A2JS-01 12 49938036 49938036 C A KCNH3 Missense_Mutation p.Q354K 0.14 deleterious(0) probably_damaging(0.991) TCGA-E9-A2JS-01 12 54778399 54778399 A C ZNF385A Intron 0.25 TCGA-E9-A2JS-01 12 57910283 57910283 G A MARS Silent p.A874A 0.43 TCGA-E9-A2JS-01 12 89864272 89864272 C A POC1B Splice_Site p.X226_splice 0.24 TCGA-E9-A2JS-01 12 89864273 89864273 T G POC1B Splice_Site p.X226_splice 0.23 TCGA-E9-A2JS-01 13 25914162 25914162 G A NUPL1 Missense_Mutation p.A564T 0.67 deleterious(0.01) probably_damaging(0.998) TCGA-E9-A2JS-01 14 24542738 24542738 T C CPNE6 Missense_Mutation p.S67P 0.54 deleterious(0) possibly_damaging(0.699) TCGA-E9-A2JS-01 14 52433354 52433354 G A GNG2 Silent p.P55P 0.15 TCGA-E9-A2JS-01 15 22383382 22383382 C A OR4N4 Silent p.R304R 0.14 TCGA-E9-A2JS-01 16 30666190 30666190 C T PRR14 Missense_Mutation p.T300I 0.30 tolerated(0.28) benign(0.006) TCGA-E9-A2JS-01 16 4867659 4867659 G A GLYR1 Silent p.I282I 0.32 TCGA-E9-A2JS-01 16 56669901 56669901 G A MT1M 3'Flank 0.50 TCGA-E9-A2JS-01 17 27038805 27038805 A C PROCA1 5'UTR 0.30 TCGA-E9-A2JS-01 17 30325875 30325875 G A SUZ12 Silent p.G691G 0.21 TCGA-E9-A2JS-01 17 72233552 72233552 G A TTYH2 Silent p.A178A 0.17 TCGA-E9-A2JS-01 17 74077643 74077643 G A ZACN Silent p.T229T 0.18 TCGA-E9-A2JS-01 17 79414752 79414752 C A RP11-1055B8.7 Missense_Mutation p.A1285E 0.14 possibly_damaging(0.605) TCGA-E9-A2JS-01 19 1004642 1004642 C T GRIN3B Missense_Mutation p.P381L 0.25 deleterious(0) probably_damaging(0.95) TCGA-E9-A2JS-01 19 40196607 40196607 G T LGALS14 Silent p.V20V 0.29 TCGA-E9-A2JS-01 19 48978182 48978182 C T CYTH2 Missense_Mutation p.R262W 0.11 deleterious(0.01) benign(0.247) TCGA-E9-A2JS-01 19 48981327 48981327 G A CYTH2 Silent p.G270G 0.53 TCGA-E9-A2JS-01 1 117658239 117658239 G A TRIM45 Silent p.G475G 0.15 TCGA-E9-A2JS-01 1 145281969 145281969 G A NOTCH2NL Missense_Mutation p.G217R 0.05 tolerated_low_confidence(0.07) benign(0.002) TCGA-E9-A2JS-01 1 158639209 158639209 C T SPTA1 Missense_Mutation p.E608K 0.41 deleterious(0.02) possibly_damaging(0.898) TCGA-E9-A2JS-01 1 166039935 166039935 A G FAM78B Missense_Mutation p.V110A 0.07 tolerated(0.21) benign(0.164) TCGA-E9-A2JS-01 1 166904664 166904664 C T ILDR2 Missense_Mutation p.G252S 0.09 tolerated(0.83) benign(0.016) TCGA-E9-A2JS-01 1 207870999 207870999 G A CR1L Nonsense_Mutation p.W338* 0.45 TCGA-E9-A2JS-01 1 236739582 236739582 C A HEATR1 Silent p.V1007V 0.38 TCGA-E9-A2JS-01 1 247150114 247150114 A C ZNF695 3'UTR 0.26 TCGA-E9-A2JS-01 1 248512625 248512625 G T OR14C36 Silent p.L183L 0.22 TCGA-E9-A2JS-01 1 35250833 35250833 A G GJB3 Missense_Mutation p.N157S 0.09 tolerated(0.52) benign(0) TCGA-E9-A2JS-01 1 93307451 93307451 A G RPL5 3'UTR 0.40 TCGA-E9-A2JS-01 20 16486748 16486748 C G KIF16B Missense_Mutation p.G263R 0.34 tolerated(0.16) probably_damaging(1) TCGA-E9-A2JS-01 20 54824148 54824148 C T MC3R Silent p.A83A 0.32 TCGA-E9-A2JS-01 20 61598185 61598185 C T SLC17A9 Intron 0.23 TCGA-E9-A2JS-01 22 24717613 24717613 G A SPECC1L Missense_Mutation p.G222D 0.55 tolerated(0.08) benign(0.069) TCGA-E9-A2JS-01 2 109411103 109411103 G A CCDC138 Missense_Mutation p.D168N 0.68 tolerated(1) possibly_damaging(0.728) TCGA-E9-A2JS-01 2 128412099 128412099 G A LIMS2 Silent p.R110R 0.37 TCGA-E9-A2JS-01 2 179611429 179611429 C A TTN Intron 0.15 TCGA-E9-A2JS-01 2 192711272 192711272 G A SDPR Missense_Mutation p.A127V 0.37 tolerated(0.18) benign(0.086) TCGA-E9-A2JS-01 2 204735609 204735609 C T CTLA4 Missense_Mutation p.P137L 0.14 deleterious(0) probably_damaging(1) TCGA-E9-A2JS-01 2 27851696 27851696 A G CCDC121 5'UTR 0.20 TCGA-E9-A2JS-01 2 39552677 39552677 G A MAP4K3 Silent p.F300F 0.16 TCGA-E9-A2JS-01 2 56227909 56227909 C T MIR216B RNA 0.13 TCGA-E9-A2JS-01 3 20113931 20113931 G A KAT2B Missense_Mutation p.R137Q 0.35 deleterious(0) probably_damaging(0.984) TCGA-E9-A2JS-01 3 46541919 46541921 GAG - RTP3 In_Frame_Del p.E78del 0.62 TCGA-E9-A2JS-01 3 48895071 48895071 G A SLC25A20 3'UTR 0.43 TCGA-E9-A2JS-01 3 51399358 51399358 C G DOCK3 Missense_Mutation p.A1692G 0.35 tolerated_low_confidence(0.52) benign(0.092) TCGA-E9-A2JS-01 4 146567239 146567239 A G MMAA Missense_Mutation p.R222G 0.50 deleterious(0) probably_damaging(0.993) TCGA-E9-A2JS-01 4 46967070 46967070 C A GABRA4 Missense_Mutation p.A351S 0.24 tolerated(0.28) probably_damaging(0.957) TCGA-E9-A2JS-01 4 5812121 5812121 G T EVC Silent p.L946L 0.18 TCGA-E9-A2JS-01 4 80329160 80329160 G A GK2 Silent p.Y65Y 0.37 TCGA-E9-A2JS-01 4 8239229 8239229 C - SH3TC1 Frame_Shift_Del p.H1196Tfs*41 0.30 TCGA-E9-A2JS-01 4 96051023 96051024 - TA BMPR1B Frame_Shift_Ins p.A231* 0.28 TCGA-E9-A2JS-01 5 140230084 140230084 G A PCDHA9 Silent p.S668S 0.15 TCGA-E9-A2JS-01 5 140250385 140250385 C T PCDHA11 Missense_Mutation p.A566V 0.20 tolerated_low_confidence(0.24) benign(0.004) TCGA-E9-A2JS-01 5 150715059 150715059 G A SLC36A2 Missense_Mutation p.T192M 0.05 deleterious(0.05) possibly_damaging(0.743) TCGA-E9-A2JS-01 5 162884615 162884615 C G NUDCD2 Missense_Mutation p.G64A 0.12 deleterious(0.01) probably_damaging(1) TCGA-E9-A2JS-01 5 179226611 179226611 C T MGAT4B Silent p.L327L 0.13 TCGA-E9-A2JS-01 5 6600335 6600335 C A NSUN2 Missense_Mutation p.A670S 0.67 tolerated(0.76) benign(0.003) TCGA-E9-A2JS-01 6 116949429 116949429 G A RSPH4A Missense_Mutation p.R520Q 0.07 tolerated(0.08) benign(0.319) TCGA-E9-A2JS-01 6 130154694 130154694 C A TMEM244 Missense_Mutation p.C77F 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-E9-A2JS-01 6 46656756 46656757 CT - TDRD6 Frame_Shift_Del p.S298Yfs*14 0.17 TCGA-E9-A2JS-01 6 70637853 70637853 C T COL19A1 Nonsense_Mutation p.R107* 0.68 TCGA-E9-A2JS-01 6 90405593 90405593 C A MDN1 Missense_Mutation p.G3168W 0.30 probably_damaging(0.913) TCGA-E9-A2JS-01 7 112098997 112098997 A T IFRD1 Missense_Mutation p.E164V 0.08 deleterious(0) probably_damaging(1) TCGA-E9-A2JS-01 7 116199190 116199190 C A CAV1 Missense_Mutation p.A129E 0.38 tolerated(0.05) possibly_damaging(0.609) TCGA-E9-A2JS-01 7 126173023 126173023 C A GRM8 Missense_Mutation p.A805S 0.18 tolerated(0.69) benign(0.097) TCGA-E9-A2JS-01 7 129856219 129856219 G A SSMEM1 Missense_Mutation p.R215Q 0.23 tolerated(0.05) benign(0) TCGA-E9-A2JS-01 7 157985163 157985163 G A PTPRN2 Silent p.S135S 0.47 TCGA-E9-A2JS-01 7 50607722 50607722 G A DDC Missense_Mutation p.T69M 0.50 deleterious(0.01) probably_damaging(1) TCGA-E9-A2JS-01 8 101270725 101270725 A C RNF19A 3'UTR 0.15 TCGA-E9-A2JS-01 8 105393413 105393413 G A DPYS Intron 0.09 TCGA-E9-A2JS-01 8 145757696 145757696 G A ARHGAP39 Silent p.H991H 0.22 TCGA-E9-A2JS-01 8 27455670 27455670 G A CLU 3'UTR 0.53 TCGA-E9-A2JS-01 8 82357157 82357157 T C PMP2 Silent p.G47G 0.03 TCGA-E9-A2JS-01 9 124962240 124962240 G A MORN5 3'UTR 0.16 TCGA-E9-A2JS-01 9 132637217 132637217 C A USP20 Silent p.G677G 0.26 TCGA-E9-A2JS-01 9 136302057 136302057 G T ADAMTS13 Missense_Mutation p.A473S 0.53 deleterious(0) possibly_damaging(0.904) TCGA-E9-A2JS-01 9 21367501 21367501 G T IFNA13 Missense_Mutation p.A170E 0.19 deleterious(0.01) benign(0.174) TCGA-E9-A2JS-01 X 151869895 151869895 C A MAGEA6 Silent p.I195I 0.20 TCGA-E9-A2JS-01 X 154133244 154133244 A G F8 Missense_Mutation p.S1810P 0.13 tolerated(0.2) possibly_damaging(0.82) TCGA-E9-A2JS-01 X 69424319 69424319 G A DGAT2L6 Missense_Mutation p.R271H 0.15 deleterious(0.02) benign(0.015) TCGA-E9-A2JS-01 X 72804295 72804295 G T CHIC1 Missense_Mutation p.A132S 0.20 tolerated(0.92) benign(0.054) TCGA-E9-A2JT-01 10 134521840 134521840 C T INPP5A Silent p.F166F 0.06 TCGA-E9-A2JT-01 10 31815746 31815746 C T ZEB1 Nonsense_Mutation p.Q978* 0.08 TCGA-E9-A2JT-01 11 56258281 56258281 G C OR5M8 Missense_Mutation p.S189C 0.08 deleterious(0) probably_damaging(0.98) TCGA-E9-A2JT-01 12 52308267 52308267 G A ACVRL1 Missense_Mutation p.E224K 0.07 deleterious(0) possibly_damaging(0.754) TCGA-E9-A2JT-01 14 31119831 31119831 G A SCFD1 Missense_Mutation p.D244N 0.07 tolerated(0.31) benign(0.38) TCGA-E9-A2JT-01 15 64017497 64017497 G A HERC1 Nonsense_Mutation p.Q1188* 0.07 TCGA-E9-A2JT-01 16 68847282 68847282 G C CDH1 Missense_Mutation p.D402H 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A2JT-01 19 49552084 49552084 G C CGB8 5'UTR 0.07 TCGA-E9-A2JT-01 1 186107030 186107030 C A HMCN1 Nonsense_Mutation p.S4617* 0.08 TCGA-E9-A2JT-01 1 204494722 204494722 C G MDM4 Missense_Mutation p.Q26E 0.04 deleterious(0) benign(0.259) TCGA-E9-A2JT-01 1 207510113 207510113 C T CD55 Missense_Mutation p.S310L 0.06 tolerated(0.31) benign(0.199) TCGA-E9-A2JT-01 1 92612754 92612754 G C BTBD8 Missense_Mutation p.L316F 0.06 tolerated(0.7) possibly_damaging(0.51) TCGA-E9-A2JT-01 22 39138405 39138405 C G SUN2 Silent p.L344L 0.12 TCGA-E9-A2JT-01 2 160139529 160139529 A T WDSUB1 Missense_Mutation p.C18S 0.10 deleterious(0) probably_damaging(0.999) TCGA-E9-A2JT-01 3 65415594 65415594 C T MAGI1 Missense_Mutation p.D590N 0.05 tolerated(0.07) probably_damaging(0.966) TCGA-E9-A2JT-01 5 154394142 154394142 C T KIF4B Silent p.L241L 0.05 TCGA-E9-A2JT-01 6 159688835 159688835 G C FNDC1 Splice_Site p.X1816_splice 0.07 TCGA-E9-A2JT-01 6 90305656 90305656 C A ANKRD6 Missense_Mutation p.L48I 0.09 deleterious(0) probably_damaging(0.992) TCGA-E9-A2JT-01 7 110763866 110763866 C T LRRN3 Silent p.L346L 0.11 TCGA-E9-A2JT-01 7 111629177 111629177 C A DOCK4 Missense_Mutation p.M119I 0.07 tolerated(0.16) benign(0.01) TCGA-E9-A2JT-01 7 156451163 156451163 G C RNF32 Missense_Mutation p.A195P 0.10 deleterious(0) probably_damaging(1) TCGA-E9-A2JT-01 8 66637111 66637111 G A PDE7A Silent p.D322D 0.07 TCGA-E9-A2JT-01 8 95538749 95538749 C G KIAA1429 Missense_Mutation p.E575Q 0.11 tolerated(0.18) possibly_damaging(0.716) TCGA-E9-A2JT-01 9 110249348 110249348 T G KLF4 Missense_Mutation p.K409Q 0.03 deleterious(0) benign(0.334) TCGA-E9-A2JT-01 X 108887291 108887291 G C ACSL4 Silent p.L701L 0.05 TCGA-E9-A2JT-01 X 129813681 129813681 T C ENOX2 Missense_Mutation p.K128E 0.08 deleterious(0) probably_damaging(0.993) TCGA-E9-A2JT-01 X 135593757 135593757 G C HTATSF1 Missense_Mutation p.R618T 0.09 tolerated_low_confidence(0.13) unknown(0) TCGA-E9-A2JT-01 X 37029529 37029529 C T FAM47C Nonsense_Mutation p.Q1016* 0.13 TCGA-E9-A3HO-01 10 118187449 118187449 A C PNLIPRP3 5'UTR 0.60 TCGA-E9-A3HO-01 10 24833322 24833323 AA - KIAA1217 Frame_Shift_Del p.Q1708Rfs*12 0.25 TCGA-E9-A3HO-01 10 61023902 61023902 T G FAM13C Missense_Mutation p.N323H 0.19 tolerated(0.05) probably_damaging(0.967) TCGA-E9-A3HO-01 10 99192356 99192356 C G PGAM1 3'UTR 0.38 TCGA-E9-A3HO-01 11 10875564 10875564 G C ZBED5 Missense_Mutation p.S310C 0.47 tolerated(0.2) possibly_damaging(0.857) TCGA-E9-A3HO-01 11 20805317 20805317 T G NELL1 Silent p.T92T 0.17 TCGA-E9-A3HO-01 11 47470566 47470566 C T RAPSN 5'UTR 0.53 TCGA-E9-A3HO-01 11 5153313 5153313 A G OR52A5 Missense_Mutation p.I187T 0.11 deleterious(0) possibly_damaging(0.555) TCGA-E9-A3HO-01 11 82644836 82644836 C G C11orf82 Missense_Mutation p.A819G 0.25 tolerated(0.1) benign(0.085) TCGA-E9-A3HO-01 12 4736542 4736542 G A AKAP3 Missense_Mutation p.P509L 0.20 tolerated(0.61) benign(0.124) TCGA-E9-A3HO-01 12 51252720 51252720 A G TMPRSS12 Missense_Mutation p.K179R 0.43 tolerated(0.21) benign(0.034) TCGA-E9-A3HO-01 12 57932304 57932304 G A DCTN2 Silent p.L40L 0.28 TCGA-E9-A3HO-01 13 32906916 32906919 AAAG - BRCA2 Frame_Shift_Del p.K437Ifs*22 0.58 TCGA-E9-A3HO-01 13 48881458 48881459 - AT RB1 Frame_Shift_Ins p.C61Ifs*5 0.38 TCGA-E9-A3HO-01 13 48881460 48881460 G A RB1 Missense_Mutation p.C61Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-E9-A3HO-01 14 23512619 23512619 C T PSMB11 3'UTR 0.53 TCGA-E9-A3HO-01 14 45403346 45403346 C T KLHL28 Missense_Mutation p.G439S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A3HO-01 15 56382849 56382849 A C RFX7 3'UTR 0.38 TCGA-E9-A3HO-01 15 59377902 59377902 C T RNF111 Missense_Mutation p.P832L 0.21 deleterious(0.04) benign(0.017) TCGA-E9-A3HO-01 15 63597848 63597848 G A APH1B Silent p.A214A 0.42 TCGA-E9-A3HO-01 15 74326810 74326810 C G PML Intron 0.28 TCGA-E9-A3HO-01 16 19775192 19775192 C G IQCK Missense_Mutation p.A166G 0.55 deleterious(0.04) possibly_damaging(0.906) TCGA-E9-A3HO-01 16 20745524 20745525 CA - THUMPD1 3'UTR 0.31 TCGA-E9-A3HO-01 16 2283116 2283116 A G E4F1 Missense_Mutation p.T330A 0.19 tolerated(0.12) possibly_damaging(0.55) TCGA-E9-A3HO-01 16 2296901 2296901 G C ECI1 Missense_Mutation p.L85V 0.12 deleterious(0.01) possibly_damaging(0.853) TCGA-E9-A3HO-01 16 31002369 31002369 C G STX1B 3'UTR 0.32 TCGA-E9-A3HO-01 17 38956060 38956060 C T KRT28 Missense_Mutation p.G29D 0.61 deleterious(0.02) possibly_damaging(0.703) TCGA-E9-A3HO-01 17 39659292 39659292 G T KRT13 Missense_Mutation p.T265N 0.48 deleterious(0) probably_damaging(0.944) TCGA-E9-A3HO-01 18 48256969 48256969 G A MAPK4 3'UTR 0.26 TCGA-E9-A3HO-01 19 16222609 16222609 A C RAB8A 5'UTR 0.31 TCGA-E9-A3HO-01 19 16641615 16641615 C - CHERP Frame_Shift_Del p.A251Pfs*404 0.19 TCGA-E9-A3HO-01 19 19360904 19360904 T G NCAN 3'UTR 0.19 TCGA-E9-A3HO-01 19 3619189 3619189 G A CACTIN Silent p.A312A 0.11 TCGA-E9-A3HO-01 19 38974020 38974020 A G RYR1 Missense_Mutation p.M1600V 0.34 benign(0.12) TCGA-E9-A3HO-01 19 40880439 40880439 C G PLD3 Missense_Mutation p.L311V 0.10 tolerated(0.25) possibly_damaging(0.456) TCGA-E9-A3HO-01 19 51519314 51519314 T C KLK10 Missense_Mutation p.Q123R 0.38 tolerated(0.52) benign(0.001) TCGA-E9-A3HO-01 19 5653376 5653376 A T SAFB Missense_Mutation p.T491S 0.52 tolerated(0.61) benign(0.028) TCGA-E9-A3HO-01 19 57985415 57985424 CTAGGAAGTC - ZNF772 Frame_Shift_Del p.D230Pfs*280 0.22 TCGA-E9-A3HO-01 1 151774826 151774826 G C LINGO4 Missense_Mutation p.R119G 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-E9-A3HO-01 1 15807633 15807633 C A CELA2B Missense_Mutation p.T57N 0.55 deleterious(0.02) benign(0.203) TCGA-E9-A3HO-01 1 159889115 159889118 GCCA - TAGLN2 Frame_Shift_Del p.L135Qfs*2 0.27 TCGA-E9-A3HO-01 1 160314290 160314290 G A NCSTN Intron 0.16 TCGA-E9-A3HO-01 1 162482580 162482580 G A UHMK1 Missense_Mutation p.D331N 0.18 tolerated(0.15) possibly_damaging(0.517) TCGA-E9-A3HO-01 1 228487757 228487757 T A OBSCN Missense_Mutation p.L4550Q 0.19 probably_damaging(1) TCGA-E9-A3HO-01 1 53569223 53569223 G T SLC1A7 Silent p.T164T 0.42 TCGA-E9-A3HO-01 1 76356408 76356408 G A MSH4 Missense_Mutation p.D752N 0.16 tolerated(0.2) benign(0.005) TCGA-E9-A3HO-01 20 33645320 33645320 T C TRPC4AP Missense_Mutation p.K157E 0.35 tolerated(0.26) benign(0.108) TCGA-E9-A3HO-01 20 36718278 36718278 G C RPRD1B 3'UTR 0.42 TCGA-E9-A3HO-01 20 47835881 47835881 C A DDX27 5'Flank 0.43 TCGA-E9-A3HO-01 22 30494914 30494914 C T HORMAD2 Missense_Mutation p.S42F 0.62 deleterious(0) probably_damaging(0.977) TCGA-E9-A3HO-01 2 179586824 179586824 T C TTN Silent p.V7522V 0.68 TCGA-E9-A3HO-01 2 232234731 232234731 C A ARMC9 RNA 0.10 TCGA-E9-A3HO-01 2 232234732 232234732 C A ARMC9 RNA 0.10 TCGA-E9-A3HO-01 2 73800418 73800418 G A ALMS1 Missense_Mutation p.R3804Q 0.45 benign(0.239) TCGA-E9-A3HO-01 2 74687076 74687076 G T WBP1 Missense_Mutation p.R83S 0.44 deleterious(0) probably_damaging(0.999) TCGA-E9-A3HO-01 2 84867703 84867703 G T DNAH6 Splice_Site p.X1657_splice 0.20 TCGA-E9-A3HO-01 3 195480050 195480050 C T MUC4 Missense_Mutation p.C5127Y 0.57 benign(0.238) TCGA-E9-A3HO-01 4 10117755 10117755 G T WDR1 Silent p.V40V 0.28 TCGA-E9-A3HO-01 4 436142 436142 G C ZNF721 Missense_Mutation p.A705G 0.59 tolerated(0.06) benign(0.097) TCGA-E9-A3HO-01 5 127666379 127666379 C T FBN2 Missense_Mutation p.E1411K 0.33 deleterious(0) possibly_damaging(0.881) TCGA-E9-A3HO-01 5 140021650 140021650 C T TMCO6 Intron 0.60 TCGA-E9-A3HO-01 5 39376958 39376958 C A DAB2 Missense_Mutation p.G644V 0.33 deleterious(0) possibly_damaging(0.901) TCGA-E9-A3HO-01 5 93805804 93805804 C G KIAA0825 Silent p.L578L 0.43 TCGA-E9-A3HO-01 6 106649958 106649958 T A ATG5 Missense_Mutation p.T194S 0.12 tolerated(0.81) benign(0.003) TCGA-E9-A3HO-01 6 106649961 106649961 T A ATG5 Missense_Mutation p.T193S 0.12 tolerated(0.79) benign(0.02) TCGA-E9-A3HO-01 6 11105604 11105604 A C ERVFRD-1 5'UTR 0.35 TCGA-E9-A3HO-01 6 32942393 32942394 CC - BRD2 Frame_Shift_Del p.P62Tfs*65 0.29 TCGA-E9-A3HO-01 6 83847275 83847275 A C DOPEY1 Missense_Mutation p.T1172P 0.48 tolerated_low_confidence(0.3) benign(0) TCGA-E9-A3HO-01 7 117008695 117008695 T A ASZ1 Missense_Mutation p.I378F 0.24 tolerated(0.07) possibly_damaging(0.866) TCGA-E9-A3HO-01 7 143085893 143085893 C T ZYX Missense_Mutation p.P450S 0.55 deleterious(0.03) benign(0.223) TCGA-E9-A3HO-01 7 151874092 151874093 - T KMT2C Frame_Shift_Ins p.S2816Ifs*6 0.15 TCGA-E9-A3HO-01 7 15651094 15651094 T C MEOX2 3'UTR 0.35 TCGA-E9-A3HO-01 7 5567187 5567187 G - ACTB 3'UTR 0.14 TCGA-E9-A3HO-01 8 53092687 53092687 G A ST18 Missense_Mutation p.T91I 0.30 tolerated(0.28) benign(0.001) TCGA-E9-A3HO-01 9 130478301 130478301 G T PTRH1 5'UTR 0.25 TCGA-E9-A3HO-01 9 130883459 130883459 C G PTGES2 Missense_Mutation p.E367Q 0.33 tolerated(0.11) benign(0.061) TCGA-E9-A3HO-01 9 15472724 15472724 G C PSIP1 Missense_Mutation p.Q295E 0.33 tolerated(0.21) benign(0.066) TCGA-E9-A3HO-01 9 4629098 4629098 C G SPATA6L Missense_Mutation p.R83T 0.31 deleterious(0.01) probably_damaging(0.943) TCGA-E9-A3HO-01 X 131220043 131220043 A T FRMD7 Missense_Mutation p.H134Q 0.35 tolerated(0.07) benign(0.36) TCGA-E9-A3HO-01 X 142968001 142968001 G A UBE2NL 3'UTR 0.25 TCGA-E9-A3HO-01 X 154020090 154020090 G A MPP1 Silent p.S93S 0.36 TCGA-E9-A3HO-01 X 18278329 18278329 T C SCML2 Missense_Mutation p.D344G 0.33 deleterious(0.02) benign(0.002) TCGA-E9-A3QA-01 10 102794460 102794460 A G SFXN3 Silent p.E7E 0.21 TCGA-E9-A3QA-01 10 118321027 118321027 T A PNLIP Missense_Mutation p.S405T 0.12 tolerated(0.28) benign(0.022) TCGA-E9-A3QA-01 10 126097424 126097424 G C OAT Missense_Mutation p.Q104E 0.11 deleterious(0) probably_damaging(0.999) TCGA-E9-A3QA-01 10 27425310 27425310 G A YME1L1 Silent p.F202F 0.24 TCGA-E9-A3QA-01 10 82406062 82406062 C A SH2D4B 3'UTR 0.12 TCGA-E9-A3QA-01 11 18418471 18418471 G A LDHA Missense_Mutation p.V57I 0.18 deleterious(0.04) benign(0.217) TCGA-E9-A3QA-01 11 3819179 3819179 G T NUP98 5'Flank 0.19 TCGA-E9-A3QA-01 11 63742117 63742117 C A AP000721.4 5'UTR 0.20 TCGA-E9-A3QA-01 11 74058248 74058248 T C PGM2L1 Missense_Mutation p.D295G 0.31 deleterious(0) probably_damaging(0.999) TCGA-E9-A3QA-01 12 1023228 1023228 C G RAD52 Missense_Mutation p.V343L 0.27 tolerated(0.34) benign(0.002) TCGA-E9-A3QA-01 12 31270357 31270357 G C RP11-551L14.1 Intron 0.15 TCGA-E9-A3QA-01 12 64812752 64812752 A C XPOT Missense_Mutation p.K123Q 0.14 tolerated(0.37) benign(0.012) TCGA-E9-A3QA-01 15 51780803 51780803 C G DMXL2 Missense_Mutation p.D1665H 0.17 deleterious(0) probably_damaging(0.996) TCGA-E9-A3QA-01 16 1877569 1877569 G C FAHD1 Missense_Mutation p.K113N 0.14 deleterious(0) probably_damaging(0.991) TCGA-E9-A3QA-01 16 27374149 27374149 A T IL4R Silent p.A492A 0.25 TCGA-E9-A3QA-01 17 18668054 18668054 G C FBXW10 Splice_Site p.X478_splice 0.12 TCGA-E9-A3QA-01 17 29541468 29541468 G C NF1 Splice_Site p.X465_splice 0.12 TCGA-E9-A3QA-01 17 48616614 48616614 C T EPN3 Nonsense_Mutation p.Q277* 0.28 TCGA-E9-A3QA-01 17 72537599 72537599 G A CD300C 3'UTR 0.53 TCGA-E9-A3QA-01 17 76075493 76075493 G C TNRC6C Silent p.L1073L 0.08 TCGA-E9-A3QA-01 17 7752915 7752915 G A KDM6B Silent p.L1103L 0.14 TCGA-E9-A3QA-01 17 78265433 78265433 G T RNF213 Missense_Mutation p.L426F 0.38 probably_damaging(0.997) TCGA-E9-A3QA-01 19 37726901 37726901 C G ZNF383 Missense_Mutation p.Q53E 0.24 tolerated(0.05) benign(0.2) TCGA-E9-A3QA-01 1 100436152 100436152 G T SLC35A3 Intron 0.19 TCGA-E9-A3QA-01 1 110033786 110033786 C T ATXN7L2 Missense_Mutation p.S534L 0.21 deleterious(0) benign(0.271) TCGA-E9-A3QA-01 1 146736198 146736198 G C CHD1L Missense_Mutation p.D232H 0.19 tolerated(0.06) possibly_damaging(0.722) TCGA-E9-A3QA-01 1 157771818 157771818 C T FCRL1 Missense_Mutation p.G258E 0.13 deleterious(0.03) probably_damaging(0.941) TCGA-E9-A3QA-01 1 201751995 201751995 C T NAV1 Silent p.L785L 0.40 TCGA-E9-A3QA-01 1 228557681 228557681 G A OBSCN Missense_Mutation p.R7626H 0.30 probably_damaging(0.993) TCGA-E9-A3QA-01 1 24469556 24469556 G A IL22RA1 Missense_Mutation p.T6I 0.16 tolerated(0.45) benign(0.078) TCGA-E9-A3QA-01 1 39463917 39463917 C G AKIRIN1 Missense_Mutation p.Q99E 0.19 tolerated(0.1) probably_damaging(0.911) TCGA-E9-A3QA-01 1 52498476 52498476 G A KTI12 Missense_Mutation p.R320C 0.24 deleterious(0) probably_damaging(0.978) TCGA-E9-A3QA-01 1 57044839 57044839 C A PPAP2B 5'UTR 0.19 TCGA-E9-A3QA-01 1 90486421 90486421 T A ZNF326 Silent p.P415P 0.17 TCGA-E9-A3QA-01 1 92764666 92764666 C T RPAP2 Silent p.R12R 0.17 TCGA-E9-A3QA-01 20 3846420 3846420 G C MAVS Missense_Mutation p.E417Q 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-E9-A3QA-01 20 39977448 39977448 G C LPIN3 Missense_Mutation p.D160H 0.17 deleterious(0.01) benign(0.438) TCGA-E9-A3QA-01 20 39977502 39977502 G A LPIN3 Missense_Mutation p.E178K 0.15 tolerated(0.27) benign(0.094) TCGA-E9-A3QA-01 20 44049193 44049193 C T PIGT Missense_Mutation p.P298L 0.13 deleterious(0) probably_damaging(0.992) TCGA-E9-A3QA-01 20 44470513 44470513 G C ACOT8 Missense_Mutation p.I308M 0.09 deleterious(0.03) possibly_damaging(0.685) TCGA-E9-A3QA-01 22 46859789 46859789 G C CELSR1 Missense_Mutation p.S1333C 0.12 deleterious(0) probably_damaging(0.999) TCGA-E9-A3QA-01 2 108626808 108626808 C A SLC5A7 Missense_Mutation p.L412I 0.08 tolerated(0.05) possibly_damaging(0.836) TCGA-E9-A3QA-01 2 153520244 153520244 A G PRPF40A Silent p.D671D 0.36 TCGA-E9-A3QA-01 2 241631643 241631643 C T AQP12A Silent p.A92A 0.13 TCGA-E9-A3QA-01 2 27886672 27886672 C T SLC4A1AP Missense_Mutation p.S18L 0.16 deleterious_low_confidence(0.01) benign(0) TCGA-E9-A3QA-01 2 88474771 88474771 C T THNSL2 Missense_Mutation p.T141I 0.15 deleterious(0) probably_damaging(0.997) TCGA-E9-A3QA-01 2 97909714 97909714 C G ANKRD36 Missense_Mutation p.A1506G 0.15 deleterious(0.01) possibly_damaging(0.775) TCGA-E9-A3QA-01 3 108271220 108271220 T G KIAA1524 Missense_Mutation p.N803T 0.14 tolerated(0.48) benign(0.002) TCGA-E9-A3QA-01 3 122329393 122329393 C A PARP15 Missense_Mutation p.P120Q 0.29 tolerated(0.09) benign(0.07) TCGA-E9-A3QA-01 3 97593629 97593629 C G CRYBG3 Silent p.L1197L 0.23 TCGA-E9-A3QA-01 4 36068857 36068857 G A ARAP2 3'UTR 0.20 TCGA-E9-A3QA-01 5 37358219 37358219 T G NUP155 Missense_Mutation p.T143P 0.26 tolerated(0.09) benign(0.072) TCGA-E9-A3QA-01 5 878496 878496 A G BRD9 Silent p.D415D 0.14 TCGA-E9-A3QA-01 6 32948215 32948215 A G BRD2 Missense_Mutation p.N783S 0.27 tolerated(0.08) benign(0.292) TCGA-E9-A3QA-01 6 35430637 35430637 C G FANCE Silent p.T485T 0.09 TCGA-E9-A3QA-01 6 46826492 46826492 G A GPR116 Missense_Mutation p.R1050C 0.11 deleterious(0) probably_damaging(1) TCGA-E9-A3QA-01 7 103051953 103051953 C T SLC26A5 Missense_Mutation p.V162I 0.18 tolerated(0.28) benign(0.118) TCGA-E9-A3QA-01 7 124481138 124481138 C T POT1 Missense_Mutation p.D420N 0.11 tolerated(0.19) benign(0.006) TCGA-E9-A3QA-01 8 37701199 37701199 C G BRF2 3'UTR 0.37 TCGA-E9-A3QA-01 8 41789471 41789471 C A KAT6A 3'UTR 0.11 TCGA-E9-A3QA-01 X 47028777 47028777 G A RBM10 Silent p.G27G 0.12 TCGA-E9-A3QA-01 X 65824951 65824951 G C EDA2R Missense_Mutation p.R69G 0.20 deleterious(0.02) possibly_damaging(0.827) TCGA-E9-A3X8-01 10 106907463 106907463 C G SORCS3 Nonsense_Mutation p.S464* 0.09 TCGA-E9-A3X8-01 10 126310542 126310542 G A FAM53B 3'UTR 0.11 TCGA-E9-A3X8-01 10 22610482 22610482 C G BMI1 5'UTR 0.19 TCGA-E9-A3X8-01 10 91474824 91474824 C G KIF20B Missense_Mutation p.F275L 0.11 deleterious(0) probably_damaging(0.979) TCGA-E9-A3X8-01 10 95088666 95088666 G C MYOF Missense_Mutation p.S1662C 0.19 deleterious(0.01) possibly_damaging(0.757) TCGA-E9-A3X8-01 12 102151351 102151355 TATAT - GNPTAB Frame_Shift_Del p.Y1111Vfs*2 0.11 TCGA-E9-A3X8-01 13 27664065 27664065 T C USP12 Missense_Mutation p.K230R 0.26 deleterious(0) probably_damaging(0.995) TCGA-E9-A3X8-01 14 104470647 104470647 C G TDRD9 Missense_Mutation p.P519R 0.12 deleterious(0.03) benign(0.182) TCGA-E9-A3X8-01 16 17196194 17196194 G C XYLT1 3'UTR 0.21 TCGA-E9-A3X8-01 16 48337126 48337126 G A LONP2 Missense_Mutation p.G569R 0.09 deleterious(0) probably_damaging(0.921) TCGA-E9-A3X8-01 16 68849641 68849642 - ATA CDH1 Nonsense_Mutation p.T515_F516ins* 0.25 TCGA-E9-A3X8-01 18 56587855 56587855 C T ZNF532 Missense_Mutation p.T779M 0.11 tolerated(0.06) benign(0.018) TCGA-E9-A3X8-01 19 10124259 10124259 C T RDH8 Missense_Mutation p.P49L 0.15 deleterious(0.02) benign(0.363) TCGA-E9-A3X8-01 19 15770175 15770175 C T CYP4F3 Missense_Mutation p.R515W 0.10 tolerated(0.06) benign(0.077) TCGA-E9-A3X8-01 19 45735069 45735069 G A EXOC3L2 Silent p.S14S 0.19 TCGA-E9-A3X8-01 19 47231968 47231968 T C STRN4 Missense_Mutation p.I316V 0.25 tolerated(0.05) benign(0.079) TCGA-E9-A3X8-01 19 51021608 51021608 C T LRRC4B Silent p.S454S 0.14 TCGA-E9-A3X8-01 19 54848289 54848289 C A LILRA4 Missense_Mutation p.A360S 0.08 tolerated(0.1) benign(0.259) TCGA-E9-A3X8-01 19 7928670 7928670 C T EVI5L 3'Flank 0.12 TCGA-E9-A3X8-01 1 202566041 202566041 G A SYT2 Silent p.N368N 0.08 TCGA-E9-A3X8-01 1 212965024 212965024 C G NSL1 Missense_Mutation p.V28L 0.16 tolerated(0.24) benign(0.004) TCGA-E9-A3X8-01 1 228646059 228646059 G A HIST3H2BB Missense_Mutation p.E77K 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.691) TCGA-E9-A3X8-01 1 248343596 248343596 C T OR2M2 Silent p.F103F 0.07 TCGA-E9-A3X8-01 21 36164851 36164852 - G RUNX1 Frame_Shift_Ins p.I342Hfs*258 0.19 TCGA-E9-A3X8-01 2 46524981 46524981 G A EPAS1 5'UTR 0.09 TCGA-E9-A3X8-01 2 74072326 74072326 A C STAMBP Missense_Mutation p.E104D 0.13 tolerated(0.53) benign(0.281) TCGA-E9-A3X8-01 3 128356802 128356802 C T RPN1 Missense_Mutation p.G158E 0.07 deleterious(0) probably_damaging(0.976) TCGA-E9-A3X8-01 3 132389818 132389818 G C UBA5 Silent p.G168G 0.17 TCGA-E9-A3X8-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.20 deleterious(0.01) probably_damaging(1) TCGA-E9-A3X8-01 3 194062055 194062055 C T CPN2 Silent p.P459P 0.09 TCGA-E9-A3X8-01 3 8794243 8794243 C A OXTR 3'UTR 0.10 TCGA-E9-A3X8-01 4 151500311 151500311 G C LRBA Intron 0.14 TCGA-E9-A3X8-01 5 150931063 150931063 C T FAT2 Missense_Mutation p.E1421K 0.08 possibly_damaging(0.734) TCGA-E9-A3X8-01 6 29598304 29598304 G A GABBR1 Missense_Mutation p.H136Y 0.28 tolerated_low_confidence(1) benign(0.15) TCGA-E9-A3X8-01 6 70500244 70500244 G A LMBRD1 Silent p.L64L 0.18 TCGA-E9-A3X8-01 7 44258873 44258874 - T CAMK2B 3'UTR 0.33 TCGA-E9-A3X8-01 8 10756079 10756079 G A XKR6 Missense_Mutation p.R437W 0.10 deleterious(0) probably_damaging(0.991) TCGA-E9-A3X8-01 9 140323375 140323375 C G NOXA1 Silent p.L137L 0.09 TCGA-E9-A3X8-01 9 34370018 34370018 T A KIAA1161 3'UTR 0.12 TCGA-E9-A3X8-01 X 101576790 101576790 C T NXF2 Missense_Mutation p.P429L 0.16 tolerated(0.09) benign(0.314) TCGA-E9-A3X8-01 X 139865867 139865867 C T CDR1 Missense_Mutation p.G222E 0.14 tolerated(0.21) probably_damaging(0.969) TCGA-E9-A54Y-01 11 113848271 113848271 C T HTR3A Intron 0.13 TCGA-E9-A54Y-01 11 118359386 118359386 G T KMT2A Nonsense_Mutation p.E1464* 0.83 TCGA-E9-A54Y-01 11 18195222 18195222 C T MRGPRX4 Missense_Mutation p.A140V 0.19 tolerated(0.22) benign(0.262) TCGA-E9-A54Y-01 11 35282449 35282449 C T SLC1A2 Missense_Mutation p.E573K 0.16 tolerated_low_confidence(0.05) benign(0.045) TCGA-E9-A54Y-01 11 62343518 62343518 C T TUT1 Missense_Mutation p.R596Q 0.55 deleterious(0.01) possibly_damaging(0.898) TCGA-E9-A54Y-01 12 108603944 108603944 G A WSCD2 Missense_Mutation p.G182S 0.55 deleterious(0.02) possibly_damaging(0.873) TCGA-E9-A54Y-01 12 133418072 133418072 G A CHFR 3'UTR 0.33 TCGA-E9-A54Y-01 12 53448060 53448060 C A TENC1 Missense_Mutation p.F129L 0.54 tolerated(0.18) probably_damaging(0.992) TCGA-E9-A54Y-01 12 54472953 54472953 G A RP11-834C11.3 Intron 0.49 TCGA-E9-A54Y-01 13 32937567 32937567 G A BRCA2 Missense_Mutation p.G2743D 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-E9-A54Y-01 16 21979966 21979966 G A UQCRC2 Silent p.Q210Q 0.12 TCGA-E9-A54Y-01 16 21991979 21991979 C T UQCRC2 Silent p.V412V 0.06 TCGA-E9-A54Y-01 16 21995507 21995507 G A PDZD9 3'UTR 0.08 TCGA-E9-A54Y-01 16 21995560 21995560 G A PDZD9 3'UTR 0.08 TCGA-E9-A54Y-01 16 21995582 21995582 G A PDZD9 3'UTR 0.05 TCGA-E9-A54Y-01 16 28914702 28914703 CA - ATP2A1 Frame_Shift_Del p.L975Afs*23 0.46 TCGA-E9-A54Y-01 17 27899465 27899465 C T TP53I13 Silent p.N273N 0.23 TCGA-E9-A54Y-01 17 40872445 40872445 C T EZH1 Silent p.L170L 0.08 TCGA-E9-A54Y-01 17 45925439 45925439 C T SP6 Silent p.S119S 0.09 TCGA-E9-A54Y-01 17 78115160 78115160 C G EIF4A3 Missense_Mutation p.L110F 0.10 deleterious(0) probably_damaging(1) TCGA-E9-A54Y-01 18 43667372 43667372 T C ATP5A1 Missense_Mutation p.M296V 0.29 deleterious_low_confidence(0.03) benign(0.176) TCGA-E9-A54Y-01 1 11174931 11174931 C T MTOR Missense_Mutation p.R2368Q 0.20 deleterious(0) probably_damaging(0.936) TCGA-E9-A54Y-01 1 148202494 148202494 C T PPIAL4D 5'UTR 0.28 TCGA-E9-A54Y-01 1 157514865 157514865 C A FCRL5 Silent p.L105L 0.18 TCGA-E9-A54Y-01 1 158390002 158390002 C A OR10K2 Missense_Mutation p.V219F 0.15 deleterious(0.03) benign(0.367) TCGA-E9-A54Y-01 1 186086699 186086699 C A HMCN1 Missense_Mutation p.T3931N 0.25 benign(0.34) TCGA-E9-A54Y-01 1 197124588 197124588 A G ZBTB41 3'UTR 0.73 TCGA-E9-A54Y-01 1 35852683 35852683 C A ZMYM4 Missense_Mutation p.T639K 0.23 tolerated(0.94) benign(0.017) TCGA-E9-A54Y-01 20 47589751 47589751 G A ARFGEF2 Missense_Mutation p.R532H 0.15 tolerated(0.15) possibly_damaging(0.781) TCGA-E9-A54Y-01 22 38528924 38528924 C T PLA2G6 Missense_Mutation p.D331N 0.55 deleterious(0.01) possibly_damaging(0.795) TCGA-E9-A54Y-01 2 32475166 32475166 C T NLRC4 Silent p.G589G 0.21 TCGA-E9-A54Y-01 2 70187694 70187694 G A ASPRV1 3'UTR 0.19 TCGA-E9-A54Y-01 3 1445171 1445171 C T CNTN6 3'UTR 0.19 TCGA-E9-A54Y-01 3 57557144 57557144 G A ARF4 3'UTR 0.25 TCGA-E9-A54Y-01 3 99513184 99513184 G A COL8A1 Missense_Mutation p.G147R 0.22 deleterious(0) unknown(0) TCGA-E9-A54Y-01 4 110971231 110971231 A C ELOVL6 3'UTR 0.50 TCGA-E9-A54Y-01 5 145719176 145719176 G A POU4F3 Silent p.A62A 0.10 TCGA-E9-A54Y-01 5 150920247 150920247 G A FAT2 Missense_Mutation p.R2974C 0.28 probably_damaging(1) TCGA-E9-A54Y-01 5 176638368 176638368 G T NSD1 Nonsense_Mutation p.E990* 0.54 TCGA-E9-A54Y-01 5 36049459 36049460 - A UGT3A2 Frame_Shift_Ins p.L125Ffs*3 0.23 TCGA-E9-A54Y-01 5 68737534 68737534 A T MARVELD2 3'UTR 0.20 TCGA-E9-A54Y-01 6 12123074 12123074 G T HIVEP1 Missense_Mutation p.A1016S 0.42 tolerated(0.12) possibly_damaging(0.8) TCGA-E9-A54Y-01 6 161012001 161012001 C T LPA Silent p.A1254A 0.72 TCGA-E9-A54Y-01 6 26158349 26158349 G C HIST1H2BD 5'Flank 0.41 TCGA-E9-A54Y-01 6 33173041 33173041 G C HSD17B8 Missense_Mutation p.G105A 0.12 deleterious(0) probably_damaging(0.99) TCGA-E9-A54Y-01 6 40400151 40400151 G - LRFN2 Frame_Shift_Del p.L235Cfs*89 0.30 TCGA-E9-A54Y-01 7 101833121 101833121 C T CUX1 Missense_Mutation p.A360V 0.42 tolerated(0.21) unknown(0) TCGA-E9-A54Y-01 7 134618585 134618585 G T CALD1 Missense_Mutation p.E355D 0.39 tolerated_low_confidence(0.37) unknown(0) TCGA-E9-A54Y-01 8 124792286 124792286 C T FAM91A1 Missense_Mutation p.S204F 0.05 deleterious(0) benign(0.009) TCGA-E9-A54Y-01 8 145223294 145223294 C T MROH1 Missense_Mutation p.P40L 0.06 deleterious(0) possibly_damaging(0.638) TCGA-E9-A54Y-01 8 2024279 2024279 C T MYOM2 Silent p.D393D 0.30 TCGA-E9-A54Y-01 8 27685656 27685656 A G PBK Missense_Mutation p.F40L 0.39 tolerated(0.14) benign(0.005) TCGA-E9-A54Y-01 8 38205127 38205127 G C WHSC1L1 Nonsense_Mutation p.S188* 0.09 TCGA-E9-A54Y-01 8 38205216 38205216 G C WHSC1L1 Silent p.T158T 0.07 TCGA-E9-A54Y-01 8 38205349 38205349 G A WHSC1L1 Missense_Mutation p.S114L 0.05 tolerated_low_confidence(0.23) benign(0) TCGA-E9-A54Y-01 8 38205403 38205403 G A WHSC1L1 Missense_Mutation p.S96L 0.07 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-E9-A54Y-01 8 38205427 38205427 G A WHSC1L1 Missense_Mutation p.S88L 0.08 tolerated_low_confidence(0.38) benign(0.01) TCGA-E9-A54Y-01 9 131347092 131347092 A G SPTAN1 Missense_Mutation p.T844A 0.25 tolerated(0.42) benign(0.022) TCGA-E9-A54Y-01 9 35708476 35708476 T G TLN1 Silent p.A1444A 0.39 TCGA-E9-A54Y-01 X 134167432 134167432 G A FAM127A 3'UTR 0.33 TCGA-E9-A54Y-01 X 17746847 17746847 C T NHS Missense_Mutation p.S1413F 0.50 deleterious(0) probably_damaging(0.967) TCGA-E9-A5FK-01 10 81113525 81113527 TAG - PPIF In_Frame_Del p.I184_E185delinsK 0.12 TCGA-E9-A5FK-01 11 21305884 21305884 A G NELL1 Intron 0.16 TCGA-E9-A5FK-01 11 66192144 66192144 C T NPAS4 Missense_Mutation p.R595W 0.32 deleterious(0) probably_damaging(0.999) TCGA-E9-A5FK-01 11 7111958 7111958 G T RBMXL2 3'UTR 0.09 TCGA-E9-A5FK-01 12 43896064 43896064 C T ADAMTS20 Missense_Mutation p.R253H 0.15 deleterious(0) probably_damaging(1) TCGA-E9-A5FK-01 14 102467928 102467928 C T DYNC1H1 Silent p.C1484C 0.09 TCGA-E9-A5FK-01 15 22711322 22711322 G A RN7SL545P 5'Flank 0.11 TCGA-E9-A5FK-01 16 68772203 68772204 - CAAGA CDH1 Frame_Shift_Ins p.S19Rfs*39 0.20 TCGA-E9-A5FK-01 17 16725390 16725390 G A AC022596.6 RNA 0.03 TCGA-E9-A5FK-01 17 4891764 4891764 A G INCA1 Missense_Mutation p.V216A 0.28 tolerated(0.5) benign(0.009) TCGA-E9-A5FK-01 19 11918396 11918396 C T ZNF491 3'UTR 0.23 TCGA-E9-A5FK-01 19 13563741 13563741 G T CACNA1A Missense_Mutation p.S163Y 0.12 possibly_damaging(0.781) TCGA-E9-A5FK-01 19 19168487 19168510 AATGGGGGTAGATCCATGTCCTCC - ARMC6 3'UTR 0.09 TCGA-E9-A5FK-01 19 19168520 19168520 C G ARMC6 3'UTR 0.06 TCGA-E9-A5FK-01 19 50826941 50826941 G A KCNC3 Silent p.R423R 0.09 TCGA-E9-A5FK-01 19 50939103 50939103 C T MYBPC2 Silent p.S60S 0.09 TCGA-E9-A5FK-01 19 5621373 5621373 A G SAFB2 Missense_Mutation p.I74T 0.13 deleterious(0.01) possibly_damaging(0.652) TCGA-E9-A5FK-01 1 11708829 11708829 G A FBXO2 Silent p.H271H 0.12 TCGA-E9-A5FK-01 1 151259169 151259169 C T ZNF687 Silent p.L134L 0.10 TCGA-E9-A5FK-01 1 155265263 155265263 T G PKLR Missense_Mutation p.K158Q 0.21 deleterious(0.01) benign(0.1) TCGA-E9-A5FK-01 1 197144179 197144179 T C ZBTB41 Missense_Mutation p.H649R 0.11 deleterious(0.01) benign(0.366) TCGA-E9-A5FK-01 1 222734746 222734746 G A TAF1A Silent p.A400A 0.08 TCGA-E9-A5FK-01 1 234509275 234509275 G A COA6 5'Flank 0.08 TCGA-E9-A5FK-01 20 21314341 21314341 G A XRN2 Splice_Site p.X312_splice 0.16 TCGA-E9-A5FK-01 22 16150911 16150911 G A AP000525.9 RNA 0.27 TCGA-E9-A5FK-01 2 217234763 217234763 G A MARCH4 Missense_Mutation p.A74V 0.16 tolerated_low_confidence(0.28) probably_damaging(0.939) TCGA-E9-A5FK-01 2 74332720 74332720 G A TET3 3'UTR 0.12 TCGA-E9-A5FK-01 3 129225273 129225274 AG - IFT122 Frame_Shift_Del p.E944Sfs*19 0.15 TCGA-E9-A5FK-01 3 132192020 132192020 A G DNAJC13 Missense_Mutation p.K747R 0.16 tolerated(0.29) benign(0.062) TCGA-E9-A5FK-01 3 142985433 142985433 A T SLC9A9 3'UTR 0.05 TCGA-E9-A5FK-01 4 3156030 3156030 C G HTT Missense_Mutation p.P1170R 0.14 possibly_damaging(0.905) TCGA-E9-A5FK-01 4 52883636 52883636 A C LRRC66 Missense_Mutation p.F48L 0.16 tolerated(0.09) possibly_damaging(0.771) TCGA-E9-A5FK-01 4 88016103 88016103 C T AFF1 Missense_Mutation p.S422F 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-E9-A5FK-01 6 151857489 151857489 C T CCDC170 Missense_Mutation p.R32W 0.14 deleterious(0.04) benign(0.105) TCGA-E9-A5FK-01 6 152424064 152424064 G T ESR1 3'UTR 0.15 TCGA-E9-A5FK-01 6 18222389 18222389 C T KDM1B 3'UTR 0.14 TCGA-E9-A5FK-01 6 52884131 52884131 C A ICK Nonsense_Mutation p.E129* 0.07 TCGA-E9-A5FK-01 9 117400862 117400862 C T C9orf91 Silent p.V235V 0.09 TCGA-E9-A5FK-01 9 138517918 138517918 C T GLT6D1 Missense_Mutation p.G85D 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-E9-A5FK-01 9 65506508 65506508 G T SPATA31A7 Missense_Mutation p.T351K 0.13 tolerated(0.18) benign(0.004) TCGA-E9-A5FK-01 X 135126773 135126773 G A SLC9A6 Missense_Mutation p.A666T 0.06 tolerated_low_confidence(0.18) benign(0.011) TCGA-E9-A5FK-01 X 135312689 135312689 C G MAP7D3 Missense_Mutation p.Q535H 0.06 tolerated(0.13) benign(0.006) TCGA-E9-A5FK-01 X 85117426 85117426 T A CHM 3'UTR 0.07 TCGA-E9-A5FL-01 10 102778804 102778804 C G PDZD7 Missense_Mutation p.D367H 0.39 tolerated(0.08) benign(0.168) TCGA-E9-A5FL-01 10 120354540 120354540 C G PRLHR Missense_Mutation p.V73L 0.33 deleterious(0.01) possibly_damaging(0.496) TCGA-E9-A5FL-01 10 122668442 122668442 A C WDR11 3'UTR 0.18 TCGA-E9-A5FL-01 10 124377576 124377576 C G DMBT1 Missense_Mutation p.D1516E 0.33 tolerated(0.06) possibly_damaging(0.824) TCGA-E9-A5FL-01 10 50819842 50819842 C - SLC18A3 Frame_Shift_Del p.P353Hfs*14 0.30 TCGA-E9-A5FL-01 10 70405961 70405961 C T TET1 Missense_Mutation p.R1159W 0.23 tolerated(0.1) benign(0.415) TCGA-E9-A5FL-01 10 96117087 96117087 C T NOC3L Missense_Mutation p.E118K 0.13 tolerated(0.19) benign(0.003) TCGA-E9-A5FL-01 11 105948448 105948460 CTGCCAAACGGTT - AASDHPPT Frame_Shift_Del p.K6Wfs*56 0.24 TCGA-E9-A5FL-01 11 32409884 32409884 C G WT1 3'UTR 0.45 TCGA-E9-A5FL-01 11 611789 611789 C T PHRF1 3'UTR 0.26 TCGA-E9-A5FL-01 11 65998404 65998404 G A PACS1 Missense_Mutation p.S540N 0.18 tolerated(0.38) benign(0.006) TCGA-E9-A5FL-01 11 85989575 85989575 T C EED 3'UTR 0.20 TCGA-E9-A5FL-01 12 114383699 114383699 C A RBM19 Silent p.G520G 0.25 TCGA-E9-A5FL-01 12 114383700 114383700 C G RBM19 Missense_Mutation p.G520A 0.24 deleterious(0.04) probably_damaging(0.95) TCGA-E9-A5FL-01 12 133218264 133218264 C T POLE Missense_Mutation p.D1783N 0.12 deleterious(0.02) probably_damaging(0.987) TCGA-E9-A5FL-01 12 2977776 2977776 C G FOXM1 Missense_Mutation p.E267Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-E9-A5FL-01 12 4388007 4388007 C T CCND2 Missense_Mutation p.R165C 0.12 tolerated(0.05) benign(0.056) TCGA-E9-A5FL-01 12 48439119 48439119 G A SENP1 Nonsense_Mutation p.R641* 0.15 TCGA-E9-A5FL-01 12 53683238 53683238 G T ESPL1 Missense_Mutation p.G1658V 0.18 tolerated(0.1) benign(0.197) TCGA-E9-A5FL-01 12 54955245 54955245 G C PDE1B Intron 0.26 TCGA-E9-A5FL-01 13 103718538 103718538 A G SLC10A2 Missense_Mutation p.V21A 0.21 tolerated(0.28) benign(0.003) TCGA-E9-A5FL-01 14 52782109 52782109 G A PTGER2 Silent p.T281T 0.36 TCGA-E9-A5FL-01 14 77270150 77270150 A T ANGEL1 Missense_Mutation p.S496T 0.48 tolerated(0.59) benign(0.102) TCGA-E9-A5FL-01 15 101189293 101189294 - T ASB7 3'UTR 0.44 TCGA-E9-A5FL-01 15 55664161 55664161 C T CCPG1 Missense_Mutation p.R179H 0.29 deleterious(0) probably_damaging(1) TCGA-E9-A5FL-01 15 75664516 75664516 C T SIN3A Missense_Mutation p.R1209K 0.39 tolerated(0.58) benign(0.076) TCGA-E9-A5FL-01 15 81625170 81625170 C T TMC3 Missense_Mutation p.D965N 0.11 tolerated_low_confidence(0.08) benign(0.018) TCGA-E9-A5FL-01 15 83826264 83826264 C A HDGFRP3 Missense_Mutation p.S121I 0.35 deleterious(0) probably_damaging(0.961) TCGA-E9-A5FL-01 15 84708152 84708152 A T ADAMTSL3 3'UTR 0.47 TCGA-E9-A5FL-01 15 84708153 84708153 C G ADAMTSL3 3'UTR 0.47 TCGA-E9-A5FL-01 16 1417345 1417345 G A UNKL Silent p.C595C 0.09 TCGA-E9-A5FL-01 16 20817795 20817812 GCTCGACTTCTACTTCCG - AC004381.6 5'Flank 0.35 TCGA-E9-A5FL-01 16 418609 418609 C A MRPL28 Missense_Mutation p.K156N 0.23 tolerated(0.06) possibly_damaging(0.908) TCGA-E9-A5FL-01 16 461418 461418 G A DECR2 Missense_Mutation p.G240E 0.20 deleterious(0) probably_damaging(1) TCGA-E9-A5FL-01 16 81914540 81914540 C A PLCG2 Nonsense_Mutation p.S225* 0.17 TCGA-E9-A5FL-01 17 18023342 18023342 G C MYO15A Missense_Mutation p.V410L 0.22 benign(0.009) TCGA-E9-A5FL-01 17 32953382 32953382 G T TMEM132E Missense_Mutation p.V102L 0.24 tolerated(0.1) benign(0.322) TCGA-E9-A5FL-01 17 45918617 45918629 CCTCCGCTTCTGG - SCRN2 5'UTR 0.14 TCGA-E9-A5FL-01 17 48503597 48503597 G T ACSF2 5'UTR 0.18 TCGA-E9-A5FL-01 17 48603371 48603371 G C MYCBPAP Missense_Mutation p.A681P 0.16 tolerated(0.24) benign(0.005) TCGA-E9-A5FL-01 17 60072577 60072577 T G MED13 Missense_Mutation p.E706A 0.15 deleterious(0.01) benign(0.404) TCGA-E9-A5FL-01 17 6594168 6594168 A G SLC13A5 Missense_Mutation p.V456A 0.29 deleterious(0) benign(0.078) TCGA-E9-A5FL-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.46 deleterious(0) probably_damaging(1) TCGA-E9-A5FL-01 17 77807179 77807179 G C CBX4 3'UTR 0.30 TCGA-E9-A5FL-01 19 18538177 18538177 T G SSBP4 Missense_Mutation p.Y26D 0.25 deleterious(0) probably_damaging(0.999) TCGA-E9-A5FL-01 19 22155501 22155501 A C ZNF208 Missense_Mutation p.C779G 0.22 deleterious(0) probably_damaging(0.992) TCGA-E9-A5FL-01 19 30934788 30934788 A C ZNF536 Missense_Mutation p.N107H 0.26 deleterious(0) probably_damaging(0.997) TCGA-E9-A5FL-01 19 3592295 3592295 A T GIPC3 3'UTR 0.20 TCGA-E9-A5FL-01 19 44235695 44235695 G C SMG9 3'UTR 0.09 TCGA-E9-A5FL-01 19 45801476 45801476 G T MARK4 Intron 0.27 TCGA-E9-A5FL-01 19 48893759 48893759 G C KDELR1 Silent p.V38V 0.06 TCGA-E9-A5FL-01 19 54663414 54663414 T G LENG1 Missense_Mutation p.K7T 0.27 deleterious(0) probably_damaging(0.999) TCGA-E9-A5FL-01 19 57792070 57792071 - T ZNF460 5'UTR 0.22 TCGA-E9-A5FL-01 19 6380394 6380394 C G GTF2F1 Silent p.L484L 0.35 TCGA-E9-A5FL-01 1 12907838 12907838 G A HNRNPCL1 Missense_Mutation p.A102V 0.09 tolerated(0.24) benign(0.014) TCGA-E9-A5FL-01 1 155109407 155109407 C G SLC50A1 Missense_Mutation p.L88V 0.13 tolerated(0.13) benign(0.17) TCGA-E9-A5FL-01 1 160184739 160184739 T A PEA15 3'UTR 0.12 TCGA-E9-A5FL-01 1 167097532 167097532 C T DUSP27 Missense_Mutation p.P1055L 0.15 deleterious(0) probably_damaging(0.985) TCGA-E9-A5FL-01 1 181768056 181768056 A G CACNA1E 3'UTR 0.25 TCGA-E9-A5FL-01 1 198725359 198725359 C G PTPRC 3'UTR 0.32 TCGA-E9-A5FL-01 1 200635772 200635772 G A DDX59 Nonsense_Mutation p.Q33* 0.41 TCGA-E9-A5FL-01 1 201437683 201437683 C A PHLDA3 Nonsense_Mutation p.E78* 0.05 TCGA-E9-A5FL-01 1 201867479 201867479 A G LMOD1 3'UTR 0.30 TCGA-E9-A5FL-01 1 203134377 203134377 C A ADORA1 Intron 0.33 TCGA-E9-A5FL-01 1 203453039 203453039 G A PRELP Missense_Mutation p.A243T 0.27 tolerated(0.44) benign(0.03) TCGA-E9-A5FL-01 1 223983917 223983917 G C TP53BP2 Nonsense_Mutation p.S775* 0.23 TCGA-E9-A5FL-01 1 228473949 228473949 G C OBSCN Missense_Mutation p.G3488R 0.27 probably_damaging(1) TCGA-E9-A5FL-01 1 228525020 228525020 C T OBSCN Missense_Mutation p.S6536L 0.22 probably_damaging(0.998) TCGA-E9-A5FL-01 1 235345091 235345091 G C ARID4B Nonsense_Mutation p.S1048* 0.12 TCGA-E9-A5FL-01 20 17639638 17639638 G T RRBP1 Intron 0.21 TCGA-E9-A5FL-01 20 31035309 31035309 A T C20orf112 3'UTR 0.18 TCGA-E9-A5FL-01 20 31052711 31052711 C T C20orf112 Intron 0.43 TCGA-E9-A5FL-01 20 34144962 34144962 C T ERGIC3 Intron 0.36 TCGA-E9-A5FL-01 20 34144963 34144963 A T ERGIC3 Splice_Site p.X344_splice 0.34 TCGA-E9-A5FL-01 20 40049229 40049229 C T CHD6 Missense_Mutation p.E2016K 0.31 tolerated_low_confidence(0.15) benign(0.059) TCGA-E9-A5FL-01 20 49507115 49507115 A T ADNP 3'UTR 0.16 TCGA-E9-A5FL-01 20 62729633 62729633 C T OPRL1 Silent p.I198I 0.17 TCGA-E9-A5FL-01 22 18846144 18846144 C A BCRP7 RNA 0.03 TCGA-E9-A5FL-01 22 19121835 19121835 C A DGCR14 Silent p.L435L 0.11 TCGA-E9-A5FL-01 22 21538417 21538417 C T FAM230B RNA 0.08 TCGA-E9-A5FL-01 2 113875497 113875497 G A IL1RN 5'UTR 0.37 TCGA-E9-A5FL-01 2 176958331 176958331 G A HOXD13 Nonsense_Mutation p.W238* 0.30 TCGA-E9-A5FL-01 2 179398054 179398054 C G TTN Missense_Mutation p.D34430H 0.10 TCGA-E9-A5FL-01 2 179914785 179914785 C A CCDC141 5'UTR 0.22 TCGA-E9-A5FL-01 2 185802829 185802829 C A ZNF804A Silent p.T902T 0.12 TCGA-E9-A5FL-01 2 36764583 36764583 C T CRIM1 Silent p.H839H 0.29 TCGA-E9-A5FL-01 2 53897501 53897501 G A ASB3 3'UTR 0.27 TCGA-E9-A5FL-01 2 55237435 55237435 G A RTN4 Intron 0.38 TCGA-E9-A5FL-01 2 61721114 61721114 G C XPO1 Missense_Mutation p.S387C 0.11 deleterious(0.03) benign(0.133) TCGA-E9-A5FL-01 2 80875279 80875279 G A CTNNA2 3'UTR 0.23 TCGA-E9-A5FL-01 3 128651837 128651837 G T RP11-723O4.6 Silent p.I365I 0.18 TCGA-E9-A5FL-01 3 137748728 137748728 G A CLDN18 Missense_Mutation p.G198D 0.34 tolerated(0.22) probably_damaging(0.946) TCGA-E9-A5FL-01 3 15686715 15686715 G A BTD Missense_Mutation p.G451D 0.39 deleterious(0.02) possibly_damaging(0.752) TCGA-E9-A5FL-01 3 192988480 192988480 G A HRASLS Missense_Mutation p.A270T 0.09 tolerated_low_confidence(0.44) benign(0.025) TCGA-E9-A5FL-01 3 194392975 194392975 A G LSG1 5'UTR 0.33 TCGA-E9-A5FL-01 3 196664238 196664238 G A NCBP2 Intron 0.12 TCGA-E9-A5FL-01 3 52258287 52258287 C T TLR9 Silent p.V169V 0.14 TCGA-E9-A5FL-01 3 57913586 57913586 T A SLMAP 3'UTR 0.15 TCGA-E9-A5FL-01 3 58140519 58140519 T C FLNB Silent p.A2243A 0.33 TCGA-E9-A5FL-01 3 73114960 73114960 T C PPP4R2 3'UTR 0.09 TCGA-E9-A5FL-01 4 24531273 24531273 G C DHX15 Missense_Mutation p.L741V 0.26 deleterious(0.02) benign(0.018) TCGA-E9-A5FL-01 4 3237310 3237310 T C HTT Missense_Mutation p.S2864P 0.28 probably_damaging(0.998) TCGA-E9-A5FL-01 4 68708316 68708316 A C TMPRSS11D Missense_Mutation p.L93V 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-E9-A5FL-01 5 132569175 132569175 C T FSTL4 Missense_Mutation p.G317S 0.11 deleterious(0) probably_damaging(0.999) TCGA-E9-A5FL-01 5 140263090 140263090 C T PCDHA13 Silent p.L413L 0.41 TCGA-E9-A5FL-01 5 140736720 140736720 G T PCDHGA4 Missense_Mutation p.Q651H 0.25 deleterious_low_confidence(0.01) benign(0.429) TCGA-E9-A5FL-01 5 175782695 175782695 C T KIAA1191 Missense_Mutation p.R29Q 0.25 tolerated(0.12) benign(0.232) TCGA-E9-A5FL-01 5 179663439 179663439 G C MAPK9 Nonsense_Mutation p.S407* 0.38 TCGA-E9-A5FL-01 5 180005127 180005127 T C CNOT6 3'UTR 0.05 TCGA-E9-A5FL-01 5 79950579 79950579 C T MSH3 Silent p.L11L 0.38 TCGA-E9-A5FL-01 6 118635248 118635248 T A SLC35F1 Missense_Mutation p.S354T 0.12 tolerated(0.49) benign(0.215) TCGA-E9-A5FL-01 6 157502127 157502127 G A ARID1B Missense_Mutation p.G1054R 0.11 probably_damaging(1) TCGA-E9-A5FL-01 6 32183149 32183149 C G NOTCH4 Missense_Mutation p.E625D 0.31 tolerated(0.07) benign(0.011) TCGA-E9-A5FL-01 6 44144994 44144994 A C CAPN11 Missense_Mutation p.N418T 0.28 deleterious(0) probably_damaging(0.993) TCGA-E9-A5FL-01 7 100365628 100365628 C T ZAN Silent p.L1679L 0.34 TCGA-E9-A5FL-01 7 100684489 100684489 C A MUC17 Silent p.P3264P 0.31 TCGA-E9-A5FL-01 7 111202065 111202065 C A IMMP2L 5'UTR 0.20 TCGA-E9-A5FL-01 7 158282452 158282452 G A PTPRN2 Silent p.C46C 0.40 TCGA-E9-A5FL-01 7 72717463 72717463 C G NSUN5 Missense_Mutation p.E449Q 0.10 tolerated(0.6) benign(0.01) TCGA-E9-A5FL-01 7 74536691 74536691 G A GTF2IRD2B Splice_Site p.X80_splice 0.08 TCGA-E9-A5FL-01 7 82764263 82764263 G C PCLO Missense_Mutation p.A868G 0.12 unknown(0) TCGA-E9-A5FL-01 7 92122351 92122351 G T PEX1 Silent p.S1041S 0.31 TCGA-E9-A5FL-01 7 96810329 96810329 T C ACN9 Silent p.Y60Y 0.20 TCGA-E9-A5FL-01 8 48841672 48841672 A T PRKDC Missense_Mutation p.F707I 0.08 benign(0.058) TCGA-E9-A5FL-01 8 57077309 57077309 G T PLAG1 3'UTR 0.15 TCGA-E9-A5FL-01 9 107380401 107380402 - A OR13C9 Frame_Shift_Ins p.V29Cfs*93 0.16 TCGA-E9-A5FL-01 9 108152940 108152940 T A SLC44A1 3'UTR 0.28 TCGA-E9-A5FL-01 9 130270433 130270433 T C FAM129B Missense_Mutation p.E494G 0.08 deleterious(0.01) possibly_damaging(0.786) TCGA-E9-A5FL-01 9 131862804 131862804 C G CRAT Missense_Mutation p.D324H 0.09 deleterious(0) probably_damaging(0.998) TCGA-E9-A5FL-01 9 135465371 135465371 G C BARHL1 3'UTR 0.16 TCGA-E9-A5FL-01 9 20874759 20874759 C A FOCAD Missense_Mutation p.S757Y 0.08 tolerated(0.23) benign(0.006) TCGA-E9-A5FL-01 9 4712874 4712874 C G AK3 3'UTR 0.33 TCGA-E9-A5FL-01 9 79325845 79325845 C T PRUNE2 Missense_Mutation p.D449N 0.12 deleterious(0) probably_damaging(1) TCGA-E9-A5FL-01 9 95069166 95069166 A G NOL8 Splice_Site p.X942_splice 0.13 TCGA-E9-A5FL-01 X 1719552 1719552 G A AKAP17A Missense_Mutation p.A385T 0.23 tolerated(0.09) unknown(0) TCGA-E9-A5FL-01 X 29414526 29414526 C G IL1RAPL1 Missense_Mutation p.L172V 0.20 deleterious(0.03) benign(0.003) TCGA-E9-A5FL-01 X 48676653 48676653 A G HDAC6 Missense_Mutation p.Y674C 0.27 deleterious(0) probably_damaging(0.994) TCGA-E9-A5FL-01 X 83352800 83352800 A T RPS6KA6 Silent p.L611L 0.20 TCGA-E9-A5FL-01 X 99551591 99551591 C G PCDH19 Missense_Mutation p.C1044S 0.16 tolerated_low_confidence(0.14) benign(0.006) TCGA-E9-A5FL-01 X 99890580 99890580 C T TSPAN6 Missense_Mutation p.R84Q 0.25 deleterious(0.05) benign(0.323) TCGA-E9-A5UO-01 10 8115859 8115875 CCCTGAGCCACATCTCG - GATA3 Frame_Shift_Del p.S405Qfs*97 0.65 TCGA-E9-A5UO-01 11 1263006 1263006 G C MUC5B Missense_Mutation p.Q1632H 0.75 unknown(0) TCGA-E9-A5UO-01 11 128709019 128709019 G A KCNJ1 3'UTR 0.93 TCGA-E9-A5UO-01 11 67012699 67012699 A G KDM2A Missense_Mutation p.I535V 0.51 tolerated(0.43) benign(0.04) TCGA-E9-A5UO-01 12 108589971 108589971 G A WSCD2 Missense_Mutation p.R121Q 0.70 tolerated(0.09) benign(0.246) TCGA-E9-A5UO-01 12 52695896 52695896 C T KRT86 Missense_Mutation p.R66C 0.23 deleterious(0) probably_damaging(0.993) TCGA-E9-A5UO-01 14 105608281 105608281 C T JAG2 3'UTR 0.41 TCGA-E9-A5UO-01 14 90764685 90764685 G A NRDE2 Missense_Mutation p.R529W 0.44 deleterious(0) probably_damaging(0.997) TCGA-E9-A5UO-01 15 59179738 59179738 G A SLTM Missense_Mutation p.R793W 0.23 deleterious(0) probably_damaging(0.999) TCGA-E9-A5UO-01 17 38511588 38511588 C T RARA Silent p.Y362Y 0.20 TCGA-E9-A5UO-01 17 42161001 42161001 C T HDAC5 Nonsense_Mutation p.W793* 0.47 TCGA-E9-A5UO-01 17 45018066 45018066 G A GOSR2 3'UTR 0.50 TCGA-E9-A5UO-01 17 73100170 73100172 AGA - SLC16A5 In_Frame_Del p.K422del 0.78 TCGA-E9-A5UO-01 19 40433370 40433370 C A FCGBP Missense_Mutation p.R300L 0.29 possibly_damaging(0.598) TCGA-E9-A5UO-01 19 45649032 45649032 G A PPP1R37 Missense_Mutation p.R573Q 0.29 deleterious(0) possibly_damaging(0.885) TCGA-E9-A5UO-01 19 972706 972706 G C ARID3A 3'UTR 0.56 TCGA-E9-A5UO-01 1 109351753 109351753 G A STXBP3 3'UTR 0.33 TCGA-E9-A5UO-01 1 116234481 116234481 G A VANGL1 3'UTR 0.43 TCGA-E9-A5UO-01 1 247027259 247027259 T C AHCTF1 Silent p.E1178E 0.45 TCGA-E9-A5UO-01 1 32384789 32384792 ATCA - PTP4A2 5'UTR 0.50 TCGA-E9-A5UO-01 20 33077728 33077728 G T ITCH Missense_Mutation p.W813C 0.27 deleterious(0) probably_damaging(1) TCGA-E9-A5UO-01 21 16340003 16340004 - TT NRIP1 Frame_Shift_Ins p.V171Kfs*6 0.31 TCGA-E9-A5UO-01 2 116601842 116601842 T A DPP10 3'Flank 0.46 TCGA-E9-A5UO-01 2 140990837 140990837 C T LRP1B Missense_Mutation p.R4573Q 0.22 benign(0.238) TCGA-E9-A5UO-01 2 175436224 175436224 C A WIPF1 Intron 0.50 TCGA-E9-A5UO-01 3 21478513 21478513 G A ZNF385D Silent p.L208L 0.46 TCGA-E9-A5UO-01 3 64084954 64084954 C T PRICKLE2 Missense_Mutation p.A770T 0.39 tolerated(0.63) benign(0) TCGA-E9-A5UO-01 4 10445820 10445820 G A ZNF518B Silent p.N711N 0.54 TCGA-E9-A5UO-01 4 1245889 1245889 C A CTBP1 5'Flank 0.48 TCGA-E9-A5UO-01 4 13604573 13604573 G T BOD1L1 Silent p.T1317T 0.67 TCGA-E9-A5UO-01 4 8305971 8305971 T A HTRA3 Nonsense_Mutation p.Y387* 0.45 TCGA-E9-A5UO-01 5 179740926 179740927 - A GFPT2 Frame_Shift_Ins p.K438* 0.32 TCGA-E9-A5UO-01 5 56212789 56212789 T C SETD9 3'UTR 0.33 TCGA-E9-A5UO-01 6 56323748 56323748 C A DST 3'UTR 0.26 TCGA-E9-A5UO-01 6 56323752 56323752 C G DST 3'UTR 0.29 TCGA-E9-A5UO-01 6 56323823 56323823 C G DST Missense_Mutation p.D5166H 0.34 probably_damaging(0.919) TCGA-E9-A5UO-01 6 56323940 56323940 C T DST Missense_Mutation p.D5127N 0.45 probably_damaging(0.967) TCGA-E9-A5UO-01 6 56324027 56324027 C A DST Nonsense_Mutation p.G5098* 0.44 TCGA-E9-A5UO-01 7 104703871 104703871 A G KMT2E Missense_Mutation p.N87S 0.34 tolerated(0.15) benign(0.292) TCGA-E9-A5UO-01 8 143745924 143745924 G A JRK RNA 0.38 TCGA-E9-A5UO-01 9 139400222 139400222 C T NOTCH1 Missense_Mutation p.G1376S 0.46 tolerated(0.93) benign(0.005) TCGA-E9-A5UO-01 X 48125761 48125761 G A SSX1 Missense_Mutation p.R169H 0.83 deleterious(0.01) benign(0.284) TCGA-E9-A5UO-01 X 48458086 48458086 C T WDR13 Silent p.D168D 0.75 TCGA-E9-A6HE-01 10 95430525 95430525 A - FRA10AC1 Splice_Site p.X302_splice 0.24 TCGA-E9-A6HE-01 11 70338480 70338480 C T SHANK2 Missense_Mutation p.R801Q 0.22 deleterious(0.01) possibly_damaging(0.588) TCGA-E9-A6HE-01 12 50480593 50480593 A T SMARCD1 Missense_Mutation p.R155W 0.20 deleterious(0) probably_damaging(0.99) TCGA-E9-A6HE-01 12 56825355 56825355 G A TIMELESS Missense_Mutation p.R241C 0.40 deleterious(0.01) possibly_damaging(0.893) TCGA-E9-A6HE-01 13 103544882 103544882 C T RP11-255P5.2 3'Flank 0.60 TCGA-E9-A6HE-01 14 59112302 59112302 C T DACT1 Missense_Mutation p.P321S 0.21 tolerated(0.1) probably_damaging(0.979) TCGA-E9-A6HE-01 15 33952600 33952600 C T RYR3 Missense_Mutation p.A1533V 0.21 benign(0.326) TCGA-E9-A6HE-01 15 78834956 78834956 T C PSMA4 Missense_Mutation p.F60L 0.06 tolerated(0.66) benign(0.017) TCGA-E9-A6HE-01 15 85486696 85486696 G A SLC28A1 Silent p.T534T 0.09 TCGA-E9-A6HE-01 15 89008874 89008874 A G MRPL46 Missense_Mutation p.L120S 0.26 deleterious(0) possibly_damaging(0.905) TCGA-E9-A6HE-01 16 27078753 27078753 G A C16orf82 RNA 0.43 TCGA-E9-A6HE-01 16 68849660 68849661 AA - CDH1 Frame_Shift_Del p.T522Ifs*14 0.34 TCGA-E9-A6HE-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.18 TCGA-E9-A6HE-01 17 76047223 76047223 G - TNRC6C Frame_Shift_Del p.P696Rfs*47 0.18 TCGA-E9-A6HE-01 19 36018466 36018466 C T SBSN Missense_Mutation p.E240K 0.25 tolerated(0.05) benign(0.023) TCGA-E9-A6HE-01 19 4326990 4326990 C T STAP2 Missense_Mutation p.D260N 0.34 tolerated(0.25) benign(0.036) TCGA-E9-A6HE-01 1 171250065 171250065 G A FMO1 Missense_Mutation p.M256I 0.10 tolerated(0.56) benign(0.001) TCGA-E9-A6HE-01 2 132288254 132288254 C T CCDC74A Missense_Mutation p.A133V 0.06 tolerated(0.26) benign(0.351) TCGA-E9-A6HE-01 2 43450989 43450993 TCTTC GGT ZFP36L2 3'UTR 0.40 TCGA-E9-A6HE-01 3 148744250 148744258 GGTCTATAC TAG GYG1 In_Frame_Del p.L280_T283delinsFR 0.31 TCGA-E9-A6HE-01 3 93611924 93611924 G A PROS1 Silent p.G336G 0.26 TCGA-E9-A6HE-01 4 162463830 162463830 C A FSTL5 Missense_Mutation p.R344L 0.27 tolerated(0.11) probably_damaging(0.989) TCGA-E9-A6HE-01 5 110406185 110406185 G A TSLP 5'Flank 0.33 TCGA-E9-A6HE-01 5 137677526 137677526 A G FAM53C Missense_Mutation p.N36S 0.31 tolerated(0.6) benign(0) TCGA-E9-A6HE-01 8 74462154 74462154 C A STAU2 Intron 0.30 TCGA-E9-A6HE-01 9 121976225 121976225 G A BRINP1 Silent p.A298A 0.43 TCGA-E9-A6HE-01 X 51644916 51644916 C T MAGED1 Missense_Mutation p.R799C 0.28 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-EW-A1IW-01 10 27702459 27702459 C T PTCHD3 Missense_Mutation p.V241M 0.35 deleterious(0.01) probably_damaging(0.939) TCGA-EW-A1IW-01 10 45956754 45956754 C T MARCH8 Silent p.K116K 0.24 TCGA-EW-A1IW-01 10 49939565 49939565 C T WDFY4 Silent p.L514L 0.14 TCGA-EW-A1IW-01 10 8115869 8115869 C G GATA3 Missense_Mutation p.H406Q 0.07 tolerated(0.07) probably_damaging(0.994) TCGA-EW-A1IW-01 11 10874686 10874686 G A ZBED5 Nonsense_Mutation p.Q603* 0.21 TCGA-EW-A1IW-01 11 1272374 1272374 C G MUC5B Missense_Mutation p.S4755C 0.27 unknown(0) TCGA-EW-A1IW-01 11 130109788 130109788 G A ZBTB44 Missense_Mutation p.S341L 0.16 tolerated(0.31) benign(0.392) TCGA-EW-A1IW-01 11 36119974 36119974 A G LDLRAD3 Silent p.Q139Q 0.43 TCGA-EW-A1IW-01 11 5529922 5529922 G A UBQLN3 Silent p.T289T 0.19 TCGA-EW-A1IW-01 11 64627488 64627488 C T EHD1 Missense_Mutation p.E275K 0.11 tolerated(0.11) benign(0.036) TCGA-EW-A1IW-01 11 7441759 7441759 G A SYT9 Missense_Mutation p.G454S 0.06 deleterious(0) probably_damaging(0.98) TCGA-EW-A1IW-01 11 8737243 8737243 C T ST5 Silent p.L584L 0.45 TCGA-EW-A1IW-01 12 109230761 109230761 T C SSH1 Intron 0.09 TCGA-EW-A1IW-01 12 4719382 4719382 C G DYRK4 Silent p.S359S 0.06 TCGA-EW-A1IW-01 12 53679978 53679978 G A ESPL1 Missense_Mutation p.S1153N 0.19 tolerated(0.07) benign(0.003) TCGA-EW-A1IW-01 12 88496844 88496844 C T CEP290 Intron 0.56 TCGA-EW-A1IW-01 13 114193669 114193669 C G TMCO3 Intron 0.45 TCGA-EW-A1IW-01 13 28644705 28644705 G A FLT3 Silent p.L30L 0.23 TCGA-EW-A1IW-01 14 20612762 20612762 C T OR4N5 Missense_Mutation p.R290C 0.38 deleterious(0.03) benign(0.019) TCGA-EW-A1IW-01 14 22521303 22521303 C G TRAV21 Silent p.L108L 0.18 TCGA-EW-A1IW-01 14 38061193 38061193 A T FOXA1 Missense_Mutation p.F266I 0.36 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IW-01 14 72139139 72139139 C T SIPA1L1 Silent p.V968V 0.21 TCGA-EW-A1IW-01 14 76349121 76349121 C T TTLL5 Nonsense_Mutation p.Q1206* 0.20 TCGA-EW-A1IW-01 15 48796053 48796053 C T FBN1 Missense_Mutation p.E682K 0.30 possibly_damaging(0.897) TCGA-EW-A1IW-01 16 10837736 10837736 C T NUBP1 Missense_Mutation p.H6Y 0.09 deleterious(0) benign(0.065) TCGA-EW-A1IW-01 16 27375082 27375082 G A IL4R Silent p.Q803Q 0.35 TCGA-EW-A1IW-01 16 34739642 34739642 C T RP11-80F22.15 RNA 0.06 TCGA-EW-A1IW-01 16 47497828 47497828 T G PHKB Intron 0.37 TCGA-EW-A1IW-01 16 67070624 67070624 G T CBFB Missense_Mutation p.R83L 0.39 deleterious(0.04) possibly_damaging(0.599) TCGA-EW-A1IW-01 16 89254603 89254603 C T CDH15 Silent p.A296A 0.38 TCGA-EW-A1IW-01 17 1028605 1028605 C T ABR Silent p.S53S 0.32 TCGA-EW-A1IW-01 17 11726132 11726132 G A DNAH9 Silent p.Q3009Q 0.41 TCGA-EW-A1IW-01 17 38855709 38855709 C G KRT24 Missense_Mutation p.D450H 0.20 deleterious(0.02) possibly_damaging(0.586) TCGA-EW-A1IW-01 17 38922712 38922712 C A KRT26 3'UTR 0.29 TCGA-EW-A1IW-01 17 40653307 40653307 G A ATP6V0A1 Silent p.L670L 0.28 TCGA-EW-A1IW-01 17 41935174 41935174 C T CD300LG Intron 0.05 TCGA-EW-A1IW-01 17 43559874 43559874 C T PLEKHM1 5'UTR 0.10 TCGA-EW-A1IW-01 17 72863106 72863106 G A FDXR Nonsense_Mutation p.Q67* 0.22 TCGA-EW-A1IW-01 17 74623304 74623304 C T ST6GALNAC1 Silent p.V339V 0.33 TCGA-EW-A1IW-01 18 19995437 19995437 G C CTAGE1 3'UTR 0.25 TCGA-EW-A1IW-01 19 11488689 11488689 G T EPOR Missense_Mutation p.L500M 0.39 tolerated(0.21) benign(0.352) TCGA-EW-A1IW-01 19 14910316 14910316 G A OR7C1 Silent p.F211F 0.31 TCGA-EW-A1IW-01 19 18234421 18234421 G A MAST3 Missense_Mutation p.E168K 0.27 deleterious(0) benign(0.393) TCGA-EW-A1IW-01 19 3978146 3978146 G A EEF2 Missense_Mutation p.R580C 0.35 deleterious(0.04) probably_damaging(0.983) TCGA-EW-A1IW-01 19 57665766 57665766 G A DUXA 3'UTR 0.13 TCGA-EW-A1IW-01 19 8977652 8977652 C G MUC16 Missense_Mutation p.E14065Q 0.14 probably_damaging(0.971) TCGA-EW-A1IW-01 1 118598416 118598416 A T SPAG17 Missense_Mutation p.S888T 0.31 tolerated(0.47) benign(0.01) TCGA-EW-A1IW-01 1 151274696 151274696 G A PI4KB Silent p.L545L 0.08 TCGA-EW-A1IW-01 1 156238081 156238081 C T SMG5 Missense_Mutation p.R280Q 0.25 tolerated(0.36) benign(0.402) TCGA-EW-A1IW-01 1 156640448 156640448 C T NES Missense_Mutation p.E1178K 0.17 deleterious(0.01) possibly_damaging(0.848) TCGA-EW-A1IW-01 1 172558756 172558756 G A SUCO Missense_Mutation p.G839R 0.20 tolerated(0.34) benign(0.361) TCGA-EW-A1IW-01 1 182025494 182025494 C T ZNF648 Missense_Mutation p.R551Q 0.07 tolerated(1) benign(0.003) TCGA-EW-A1IW-01 1 182525285 182525285 C T RGSL1 3'UTR 0.24 TCGA-EW-A1IW-01 1 217842392 217842392 G A SPATA17 Missense_Mutation p.M86I 0.07 tolerated(0.06) possibly_damaging(0.465) TCGA-EW-A1IW-01 1 23765288 23765288 G T ASAP3 Missense_Mutation p.Q352K 0.36 deleterious(0) probably_damaging(0.977) TCGA-EW-A1IW-01 1 237802483 237802483 G T RYR2 Missense_Mutation p.S2366I 0.20 benign(0.019) TCGA-EW-A1IW-01 1 240370290 240370290 C G FMN2 Silent p.L726L 0.35 TCGA-EW-A1IW-01 1 245704136 245704136 G T KIF26B Nonsense_Mutation p.E412* 0.27 TCGA-EW-A1IW-01 1 51910583 51910583 G C EPS15 Nonsense_Mutation p.S311* 0.10 TCGA-EW-A1IW-01 20 3104036 3104036 C T UBOX5 5'UTR 0.25 TCGA-EW-A1IW-01 20 36668886 36668886 C G RPRD1B Missense_Mutation p.I67M 0.25 deleterious(0) probably_damaging(0.947) TCGA-EW-A1IW-01 20 44037466 44037466 G - DBNDD2 Frame_Shift_Del p.E158Kfs*2 0.19 TCGA-EW-A1IW-01 20 49508731 49508731 A T ADNP Missense_Mutation p.F840L 0.11 tolerated(0.11) benign(0.057) TCGA-EW-A1IW-01 20 61458599 61458599 C T COL9A3 Nonsense_Mutation p.R267* 0.26 TCGA-EW-A1IW-01 21 44838354 44838354 G A SIK1 Silent p.T510T 0.42 TCGA-EW-A1IW-01 22 36556951 36556951 C A APOL3 5'UTR 0.40 TCGA-EW-A1IW-01 22 36737526 36737526 G A MYH9 Silent p.L127L 0.25 TCGA-EW-A1IW-01 2 102835485 102835485 A G IL1RL2 Missense_Mutation p.N266S 0.25 deleterious(0.01) probably_damaging(0.929) TCGA-EW-A1IW-01 2 107050797 107050797 C T RGPD3 Missense_Mutation p.D698N 0.25 deleterious(0.02) possibly_damaging(0.549) TCGA-EW-A1IW-01 2 11727547 11727547 C T GREB1 Intron 0.29 TCGA-EW-A1IW-01 2 131976354 131976354 G A POTEE Missense_Mutation p.A127T 0.08 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-EW-A1IW-01 2 141460119 141460119 G A LRP1B Silent p.L2009L 0.06 TCGA-EW-A1IW-01 2 143973974 143973974 C G ARHGAP15 Missense_Mutation p.L86V 0.33 deleterious(0) probably_damaging(0.974) TCGA-EW-A1IW-01 2 173686567 173686567 G C RAPGEF4 Intron 0.21 TCGA-EW-A1IW-01 2 178417029 178417029 C T TTC30B Missense_Mutation p.D155N 0.10 deleterious(0.04) probably_damaging(0.939) TCGA-EW-A1IW-01 2 179425385 179425385 C T TTN Missense_Mutation p.E28492K 0.46 TCGA-EW-A1IW-01 2 200789794 200789794 G A C2orf69 Missense_Mutation p.E115K 0.26 deleterious(0) possibly_damaging(0.654) TCGA-EW-A1IW-01 2 207610374 207610374 G T MDH1B Missense_Mutation p.D460E 0.24 tolerated(1) benign(0.001) TCGA-EW-A1IW-01 2 211465381 211465381 C T CPS1 Missense_Mutation p.S557L 0.34 deleterious(0.01) benign(0.1) TCGA-EW-A1IW-01 2 227872137 227872137 C T COL4A4 Silent p.L1659L 0.07 TCGA-EW-A1IW-01 2 231266062 231266062 C T SP140L Intron 0.08 TCGA-EW-A1IW-01 2 237405937 237405937 G A IQCA1 Nonsense_Mutation p.R69* 0.22 TCGA-EW-A1IW-01 2 242689578 242689578 T A D2HGDH Missense_Mutation p.F289Y 0.13 tolerated(0.6) benign(0.317) TCGA-EW-A1IW-01 2 3193096 3193096 G C TSSC1 3'UTR 0.32 TCGA-EW-A1IW-01 2 71047637 71047637 G A CLEC4F Missense_Mutation p.R7C 0.11 tolerated(0.16) benign(0.007) TCGA-EW-A1IW-01 2 88474210 88474210 G A THNSL2 Silent p.L92L 0.06 TCGA-EW-A1IW-01 2 97490896 97490896 G C CNNM3 Missense_Mutation p.E443Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1IW-01 3 10254979 10254979 C T IRAK2 Missense_Mutation p.A206V 0.31 deleterious(0.01) possibly_damaging(0.45) TCGA-EW-A1IW-01 3 113374108 113374108 C T KIAA2018 Missense_Mutation p.E2141K 0.26 probably_damaging(0.997) TCGA-EW-A1IW-01 3 122003458 122003458 G A CASR Missense_Mutation p.R896Q 0.23 deleterious_low_confidence(0.01) benign(0.421) TCGA-EW-A1IW-01 3 124415017 124415017 G C AC080008.1 3'Flank 0.13 TCGA-EW-A1IW-01 3 148714088 148714088 G C GYG1 Splice_Site p.X48_splice 0.24 TCGA-EW-A1IW-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.21 deleterious(0.02) probably_damaging(0.984) TCGA-EW-A1IW-01 3 180685879 180685879 T G FXR1 Silent p.S413S 0.28 TCGA-EW-A1IW-01 3 183225916 183225916 G A KLHL6 Silent p.L280L 0.10 TCGA-EW-A1IW-01 3 48667072 48667072 C T SLC26A6 Intron 0.22 TCGA-EW-A1IW-01 3 65346763 65346763 T G MAGI1 Intron 0.42 TCGA-EW-A1IW-01 3 99886581 99886581 G A CMSS1 Splice_Site p.X139_splice 0.29 TCGA-EW-A1IW-01 4 107170104 107170104 C G TBCK Missense_Mutation p.E232Q 0.20 tolerated(0.05) possibly_damaging(0.775) TCGA-EW-A1IW-01 4 122737846 122737846 G A CCNA2 3'UTR 0.24 TCGA-EW-A1IW-01 4 90034904 90034904 C G TIGD2 Missense_Mutation p.S260C 0.08 deleterious(0.02) possibly_damaging(0.841) TCGA-EW-A1IW-01 5 130769166 130769166 C G RAPGEF6 Missense_Mutation p.E1319Q 0.10 tolerated_low_confidence(0.31) benign(0.002) TCGA-EW-A1IW-01 5 140502124 140502124 C G PCDHB4 Missense_Mutation p.R182G 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.856) TCGA-EW-A1IW-01 5 140604370 140604370 G A PCDHB14 Silent p.L431L 0.07 TCGA-EW-A1IW-01 5 178541264 178541264 G C ADAMTS2 Missense_Mutation p.C1080W 0.34 deleterious(0) probably_damaging(1) TCGA-EW-A1IW-01 5 65084087 65084087 G C NLN Missense_Mutation p.Q367H 0.33 deleterious(0.03) possibly_damaging(0.54) TCGA-EW-A1IW-01 5 74096761 74096761 A G FAM169A Silent p.S349S 0.18 TCGA-EW-A1IW-01 5 80561957 80561957 G C CKMT2 Splice_Site p.X381_splice 0.07 TCGA-EW-A1IW-01 6 152570399 152570399 T C SYNE1 Splice_Site p.X6491_splice 0.11 TCGA-EW-A1IW-01 6 26225531 26225531 G A HIST1H3E Missense_Mutation p.R50H 0.11 deleterious_low_confidence(0.02) benign(0.001) TCGA-EW-A1IW-01 6 4031906 4031906 G A PRPF4B Missense_Mutation p.S52N 0.26 tolerated_low_confidence(0.39) benign(0.056) TCGA-EW-A1IW-01 6 56358848 56358848 T A DST Missense_Mutation p.E4162V 0.11 benign(0.05) TCGA-EW-A1IW-01 6 84372142 84372142 C G SNAP91 Splice_Site p.X92_splice 0.33 TCGA-EW-A1IW-01 7 150171570 150171570 C G GIMAP8 Missense_Mutation p.L385V 0.15 deleterious(0.04) possibly_damaging(0.502) TCGA-EW-A1IW-01 7 23545770 23545770 C T TRA2A Missense_Mutation p.D253N 0.20 deleterious_low_confidence(0.03) unknown(0) TCGA-EW-A1IW-01 8 144657482 144657482 T C NAPRT1 Missense_Mutation p.E442G 0.28 tolerated(0.14) benign(0.313) TCGA-EW-A1IW-01 8 17819588 17819588 C - PCM1 Frame_Shift_Del p.P790Qfs*28 0.13 TCGA-EW-A1IW-01 8 21842187 21842187 G A XPO7 Silent p.T436T 0.31 TCGA-EW-A1IW-01 8 24771731 24771731 C G NEFM Missense_Mutation p.S142W 0.14 deleterious(0) unknown(0) TCGA-EW-A1IW-01 8 8998783 8998783 G A PPP1R3B Nonsense_Mutation p.R127* 0.21 TCGA-EW-A1IW-01 9 75533709 75533709 C T ALDH1A1 Silent p.G259G 0.31 TCGA-EW-A1IW-01 9 99252296 99252296 G A HABP4 Silent p.P406P 0.11 TCGA-EW-A1IW-01 X 10058871 10058871 C T WWC3 Silent p.I146I 0.28 TCGA-EW-A1IW-01 X 114425884 114425884 G A RBMXL3 Missense_Mutation p.G627E 0.16 tolerated_low_confidence(0.17) probably_damaging(0.931) TCGA-EW-A1IW-01 X 21608696 21608696 C A CNKSR2 Missense_Mutation p.Q539K 0.05 tolerated(0.19) benign(0.109) TCGA-EW-A1IW-01 X 30269094 30269094 G T MAGEB1 Missense_Mutation p.G162C 0.18 deleterious(0) probably_damaging(0.993) TCGA-EW-A1IW-01 X 54577449 54577449 G T GNL3L Missense_Mutation p.A277S 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-EW-A1IW-01 X 70617194 70617194 C T TAF1 Silent p.L1186L 0.20 TCGA-EW-A1IW-01 X 71358881 71358881 C T NHSL2 Missense_Mutation p.R495W 0.18 deleterious(0) probably_damaging(1) TCGA-EW-A1IX-01 10 121587072 121587072 C T INPP5F Missense_Mutation p.S1060L 0.09 deleterious_low_confidence(0) benign(0.097) TCGA-EW-A1IX-01 10 25885597 25885597 G A GPR158 Missense_Mutation p.R675Q 0.21 deleterious(0.03) possibly_damaging(0.579) TCGA-EW-A1IX-01 11 18111997 18111997 G C SAAL1 Missense_Mutation p.L153V 0.09 tolerated(0.06) probably_damaging(0.919) TCGA-EW-A1IX-01 12 102151069 102151069 C T GNPTAB Missense_Mutation p.E1119K 0.12 deleterious(0.02) possibly_damaging(0.67) TCGA-EW-A1IX-01 12 50747334 50747334 G T FAM186A Missense_Mutation p.A1094D 0.28 tolerated(0.12) possibly_damaging(0.58) TCGA-EW-A1IX-01 12 50747335 50747335 C T FAM186A Missense_Mutation p.A1094T 0.27 tolerated(0.19) probably_damaging(0.956) TCGA-EW-A1IX-01 13 50296658 50296658 G A KPNA3 Nonsense_Mutation p.Q171* 0.18 TCGA-EW-A1IX-01 14 22675849 22675849 G T TRAV34 Missense_Mutation p.W54L 0.32 deleterious(0) probably_damaging(1) TCGA-EW-A1IX-01 14 68292285 68292285 G T RAD51B Missense_Mutation p.K63N 0.15 tolerated(0.18) benign(0.361) TCGA-EW-A1IX-01 15 60715718 60715718 C G NARG2 3'UTR 0.21 TCGA-EW-A1IX-01 17 3975955 3975955 C G ZZEF1 Missense_Mutation p.E1261Q 0.08 tolerated(0.3) benign(0.011) TCGA-EW-A1IX-01 17 48940939 48940939 G A TOB1 Missense_Mutation p.S147L 0.12 tolerated(0.14) benign(0.039) TCGA-EW-A1IX-01 17 56408664 56408664 G T BZRAP1 5'Flank 0.28 TCGA-EW-A1IX-01 19 44150500 44150500 C G PLAUR 3'Flank 0.17 TCGA-EW-A1IX-01 1 158622325 158622325 C T SPTA1 Missense_Mutation p.A1103T 0.05 tolerated(0.1) benign(0.212) TCGA-EW-A1IX-01 1 27094278 27094278 C G ARID1A Intron 0.26 TCGA-EW-A1IX-01 20 36641777 36641777 G A TTI1 Silent p.L148L 0.19 TCGA-EW-A1IX-01 20 44506118 44506118 C G ZSWIM3 Missense_Mutation p.I307M 0.12 deleterious(0) probably_damaging(0.951) TCGA-EW-A1IX-01 20 50803561 50803561 G A ZFP64 Silent p.I32I 0.09 TCGA-EW-A1IX-01 2 128394164 128394164 C G MYO7B Missense_Mutation p.I2030M 0.09 deleterious(0) probably_damaging(0.997) TCGA-EW-A1IX-01 3 167183403 167183403 C G SERPINI2 Silent p.L179L 0.25 TCGA-EW-A1IX-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-EW-A1IX-01 3 49138062 49138062 C A QARS Nonsense_Mutation p.E308* 0.09 TCGA-EW-A1IX-01 3 57130270 57130270 G T IL17RD 3'UTR 0.47 TCGA-EW-A1IX-01 4 20555534 20555534 G C SLIT2 Missense_Mutation p.G890R 0.24 tolerated(0.38) probably_damaging(1) TCGA-EW-A1IX-01 5 159520803 159520803 G C PWWP2A Nonsense_Mutation p.S285* 0.06 TCGA-EW-A1IX-01 5 56177428 56177428 G A MAP3K1 Missense_Mutation p.A801T 0.12 tolerated(0.14) benign(0.004) TCGA-EW-A1IX-01 5 56183345 56183345 G A MAP3K1 Missense_Mutation p.E1419K 0.09 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IX-01 6 43604174 43604174 G C MAD2L1BP Missense_Mutation p.E67Q 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.606) TCGA-EW-A1IX-01 6 5771713 5771713 G A FARS2 3'Flank 0.10 TCGA-EW-A1IX-01 6 87926060 87926060 G C ZNF292 Missense_Mutation p.D123H 0.10 tolerated(0.07) benign(0.156) TCGA-EW-A1IX-01 7 35244129 35244129 C T TBX20 Missense_Mutation p.G319E 0.11 tolerated(0.1) benign(0) TCGA-EW-A1IX-01 7 38305255 38305255 G A TRGC1 Missense_Mutation p.S9F 0.07 tolerated(0.12) probably_damaging(0.911) TCGA-EW-A1IX-01 7 44104972 44104972 C G PGAM2 Missense_Mutation p.D53H 0.13 deleterious(0) probably_damaging(1) TCGA-EW-A1IX-01 8 119936597 119936597 C T TNFRSF11B 3'UTR 0.13 TCGA-EW-A1IX-01 8 86572580 86572580 C T REXO1L1P 3'UTR 0.20 TCGA-EW-A1IX-01 9 109701281 109701281 G A ZNF462 Missense_Mutation p.G2107E 0.11 probably_damaging(1) TCGA-EW-A1IX-01 9 125680991 125680991 G A ZBTB26 Missense_Mutation p.S408F 0.09 deleterious_low_confidence(0) benign(0.003) TCGA-EW-A1IX-01 9 99699543 99699543 C T NUTM2G Missense_Mutation p.H394Y 0.12 tolerated(1) possibly_damaging(0.461) TCGA-EW-A1IX-01 X 15402995 15402995 G A PIR 3'UTR 0.10 TCGA-EW-A1IX-01 X 54783397 54783397 C A ITIH6 Splice_Site p.X1037_splice 0.13 TCGA-EW-A1IX-01 X 69722031 69722031 C G DLG3 Nonsense_Mutation p.S789* 0.13 TCGA-EW-A1IY-01 10 123845984 123845984 G A TACC2 Silent p.V1323V 0.21 TCGA-EW-A1IY-01 10 124269648 124269648 G A HTRA1 Missense_Mutation p.R386Q 0.29 tolerated(0.06) possibly_damaging(0.678) TCGA-EW-A1IY-01 10 73501658 73501658 G A CDH23 Missense_Mutation p.E1614K 0.22 tolerated(0.08) probably_damaging(0.956) TCGA-EW-A1IY-01 10 8111513 8111514 - GG GATA3 Frame_Shift_Ins p.D336Gfs*21 0.39 TCGA-EW-A1IY-01 10 99655057 99655057 G T CRTAC1 Silent p.I477I 0.17 TCGA-EW-A1IY-01 11 123893878 123893878 C T OR10G9 Silent p.L53L 0.08 TCGA-EW-A1IY-01 11 36453429 36453429 C T PRR5L Silent p.F107F 0.21 TCGA-EW-A1IY-01 11 64606241 64606241 A G CDC42BPG Missense_Mutation p.F337S 0.15 deleterious(0) probably_damaging(1) TCGA-EW-A1IY-01 11 82693197 82693197 G A RAB30 3'UTR 0.27 TCGA-EW-A1IY-01 12 133297294 133297294 C T PGAM5 Silent p.L250L 0.13 TCGA-EW-A1IY-01 13 20625607 20625608 CT - ZMYM2 Frame_Shift_Del p.L777* 0.33 TCGA-EW-A1IY-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.56 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IY-01 14 92470730 92470730 C T TRIP11 Missense_Mutation p.G1197E 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-EW-A1IY-01 15 23889494 23889494 G C MAGEL2 Missense_Mutation p.I529M 0.22 deleterious(0.01) possibly_damaging(0.877) TCGA-EW-A1IY-01 15 75305052 75305052 C T SCAMP5 Silent p.F14F 0.20 TCGA-EW-A1IY-01 16 1570681 1570681 C T IFT140 Silent p.Q1194Q 0.52 TCGA-EW-A1IY-01 16 67645412 67645412 A G CTCF Missense_Mutation p.Y226C 0.24 deleterious(0.03) probably_damaging(0.912) TCGA-EW-A1IY-01 19 7584348 7584348 G A ZNF358 Missense_Mutation p.D74N 0.27 deleterious(0.05) benign(0.001) TCGA-EW-A1IY-01 1 1238556 1238556 C T ACAP3 Missense_Mutation p.D71N 0.16 deleterious(0) possibly_damaging(0.722) TCGA-EW-A1IY-01 1 182517845 182517845 C A RGSL1 Missense_Mutation p.P940H 0.15 deleterious(0) benign(0.332) TCGA-EW-A1IY-01 1 200969064 200969064 C T KIF21B Missense_Mutation p.A572T 0.14 tolerated(0.49) benign(0.034) TCGA-EW-A1IY-01 1 234566023 234566023 G C TARBP1 Missense_Mutation p.Q807E 0.34 tolerated(0.05) possibly_damaging(0.527) TCGA-EW-A1IY-01 1 26882081 26882081 G A RPS6KA1 Missense_Mutation p.R303Q 0.19 tolerated(0.17) benign(0.238) TCGA-EW-A1IY-01 22 30079103 30079103 G A NF2 Intron 0.16 TCGA-EW-A1IY-01 2 202149808 202149808 C T CASP8 Nonsense_Mutation p.Q417* 0.19 TCGA-EW-A1IY-01 2 202149817 202149817 C T CASP8 Nonsense_Mutation p.Q420* 0.15 TCGA-EW-A1IY-01 2 215818580 215818580 G A ABCA12 Silent p.L2215L 0.21 TCGA-EW-A1IY-01 2 219610940 219610940 C T TTLL4 Nonsense_Mutation p.R654* 0.08 TCGA-EW-A1IY-01 2 230901929 230901929 G A SLC16A14 3'UTR 0.25 TCGA-EW-A1IY-01 2 231264981 231264981 C T SP140L Intron 0.15 TCGA-EW-A1IY-01 2 235950440 235950440 G A SH3BP4 Missense_Mutation p.E343K 0.33 deleterious(0.03) possibly_damaging(0.641) TCGA-EW-A1IY-01 2 61258802 61258802 C G PEX13 Missense_Mutation p.P114R 0.24 tolerated(0.15) probably_damaging(0.917) TCGA-EW-A1IY-01 2 8437353 8437353 G A LINC00299 RNA 0.16 TCGA-EW-A1IY-01 3 155838648 155838648 C A KCNAB1 Missense_Mutation p.T83N 0.12 deleterious(0.04) benign(0.002) TCGA-EW-A1IY-01 3 58154202 58154202 G T FLNB Missense_Mutation p.A2443S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1IY-01 6 144184640 144184640 G A LTV1 Silent p.K468K 0.23 TCGA-EW-A1IY-01 6 150267715 150267715 C G ULBP2 Nonsense_Mutation p.S186* 0.18 TCGA-EW-A1IY-01 6 26108248 26108248 C T HIST1H1T Missense_Mutation p.R25Q 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-EW-A1IY-01 9 116155798 116155798 T C ALAD Silent p.P14P 0.17 TCGA-EW-A1IY-01 9 119106938 119106938 G A PAPPA Missense_Mutation p.R1243Q 0.13 tolerated(0.89) benign(0) TCGA-EW-A1IZ-01 10 102006652 102006652 T C CWF19L1 Missense_Mutation p.D250G 0.11 tolerated(0.1) benign(0.002) TCGA-EW-A1IZ-01 10 102795363 102795363 C T SFXN3 Missense_Mutation p.R95C 0.25 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 10 103991347 103991347 G A PITX3 Missense_Mutation p.R107W 0.14 deleterious(0) probably_damaging(0.965) TCGA-EW-A1IZ-01 10 1151084 1151084 C T WDR37 Missense_Mutation p.T327M 0.21 deleterious(0) probably_damaging(0.996) TCGA-EW-A1IZ-01 10 115364547 115364547 C - NRAP Frame_Shift_Del p.A1350Rfs*46 0.32 TCGA-EW-A1IZ-01 10 116444186 116444186 G T ABLIM1 5'UTR 0.14 TCGA-EW-A1IZ-01 10 118458152 118458152 C T HSPA12A Silent p.A180A 0.21 TCGA-EW-A1IZ-01 10 122643389 122643389 A G WDR11 Missense_Mutation p.I613V 0.26 tolerated(1) benign(0.001) TCGA-EW-A1IZ-01 10 123848088 123848088 G A TACC2 Missense_Mutation p.G1852D 0.13 benign(0.012) TCGA-EW-A1IZ-01 10 127569349 127569349 T - DHX32 Frame_Shift_Del p.K15Nfs*42 0.29 TCGA-EW-A1IZ-01 10 129676623 129676623 G A CLRN3 Silent p.S157S 0.23 TCGA-EW-A1IZ-01 10 133946851 133946851 C T JAKMIP3 Silent p.F223F 0.36 TCGA-EW-A1IZ-01 10 134036171 134036171 C T STK32C Missense_Mutation p.D409N 0.20 tolerated(0.1) probably_damaging(0.917) TCGA-EW-A1IZ-01 10 135084508 135084508 C T ADAM8 Missense_Mutation p.G481S 0.25 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 10 18827198 18827198 C A CACNB2 Silent p.T464T 0.13 TCGA-EW-A1IZ-01 10 21097452 21097452 C T NEBL Silent p.P916P 0.17 TCGA-EW-A1IZ-01 10 22680768 22680768 G T SPAG6 Silent p.R372R 0.14 TCGA-EW-A1IZ-01 10 27447506 27447506 A G MASTL Missense_Mutation p.K72R 0.22 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 10 29580826 29580826 T C LYZL1 Silent p.I56I 0.22 TCGA-EW-A1IZ-01 10 32800682 32800682 C T CCDC7 Intron 0.17 TCGA-EW-A1IZ-01 10 50340002 50340002 T C FAM170B Missense_Mutation p.K170E 0.21 tolerated(0.25) benign(0.011) TCGA-EW-A1IZ-01 10 5567342 5567342 C T CALML3 Silent p.N98N 0.27 TCGA-EW-A1IZ-01 10 61830538 61830538 T - ANK3 Frame_Shift_Del p.D3368Ifs*60 0.41 TCGA-EW-A1IZ-01 10 64403716 64403716 G A ZNF365 Intron 0.19 TCGA-EW-A1IZ-01 10 64974383 64974383 T G JMJD1C Missense_Mutation p.D515A 0.11 deleterious_low_confidence(0.01) benign(0.271) TCGA-EW-A1IZ-01 10 70101816 70101816 A - HNRNPH3 3'UTR 0.65 TCGA-EW-A1IZ-01 10 73475667 73475668 - T C10orf105 3'UTR 0.65 TCGA-EW-A1IZ-01 10 75510956 75510956 A G SEC24C Missense_Mutation p.Q88R 0.21 deleterious(0.01) possibly_damaging(0.493) TCGA-EW-A1IZ-01 10 83637750 83637750 G A NRG3 Intron 0.19 TCGA-EW-A1IZ-01 10 91344113 91344113 T - PANK1 3'UTR 0.42 TCGA-EW-A1IZ-01 10 95557468 95557468 G A LGI1 Missense_Mutation p.V528M 0.19 deleterious(0.04) benign(0.386) TCGA-EW-A1IZ-01 11 108044552 108044552 A - NPAT Frame_Shift_Del p.C387Vfs*10 0.12 TCGA-EW-A1IZ-01 11 111746740 111746740 T - FDXACB1 Frame_Shift_Del p.R261Gfs*2 0.19 TCGA-EW-A1IZ-01 11 116734457 116734457 G A SIK3 Missense_Mutation p.A571V 0.14 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EW-A1IZ-01 11 123624868 123624868 C T OR6X1 Missense_Mutation p.R120H 0.16 deleterious(0.02) benign(0.207) TCGA-EW-A1IZ-01 11 129739508 129739508 C T NFRKB Missense_Mutation p.V1163M 0.25 deleterious_low_confidence(0.04) benign(0.299) TCGA-EW-A1IZ-01 11 1718520 1718520 G A KRTAP5-6 Silent p.G15G 0.12 TCGA-EW-A1IZ-01 11 233199 233199 G T SIRT3 Missense_Mutation p.L164M 0.15 deleterious(0) probably_damaging(0.989) TCGA-EW-A1IZ-01 11 2356953 2356953 C T CD81-AS1 Intron 0.21 TCGA-EW-A1IZ-01 11 2609949 2609949 A - KCNQ1 Frame_Shift_Del p.K422Sfs*10 0.34 TCGA-EW-A1IZ-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.27 TCGA-EW-A1IZ-01 11 43425644 43425644 G A TTC17 Missense_Mutation p.V477I 0.09 tolerated(0.39) benign(0.002) TCGA-EW-A1IZ-01 11 44228469 44228469 T A EXT2 Missense_Mutation p.I574N 0.21 deleterious(0) probably_damaging(0.998) TCGA-EW-A1IZ-01 11 48285598 48285598 C A OR4X1 Missense_Mutation p.S62R 0.12 deleterious(0.03) possibly_damaging(0.866) TCGA-EW-A1IZ-01 11 4967986 4967986 T C OR51A4 Silent p.S115S 0.10 TCGA-EW-A1IZ-01 11 55735641 55735641 C T OR10AG1 Missense_Mutation p.G100D 0.24 deleterious(0.04) benign(0.059) TCGA-EW-A1IZ-01 11 58877060 58877060 C T FAM111B 5'UTR 0.35 TCGA-EW-A1IZ-01 11 60777050 60777050 A T CD6 Missense_Mutation p.Q263L 0.33 tolerated(0.09) possibly_damaging(0.574) TCGA-EW-A1IZ-01 11 6340459 6340459 G A PRKCDBP Silent p.T240T 0.22 TCGA-EW-A1IZ-01 11 65561415 65561415 A G OVOL1 Intron 0.24 TCGA-EW-A1IZ-01 11 6653279 6653279 C T DCHS1 Missense_Mutation p.R1155H 0.16 tolerated(0.16) benign(0.013) TCGA-EW-A1IZ-01 11 67079319 67079319 G A SSH3 Silent p.Q647Q 0.30 TCGA-EW-A1IZ-01 11 67434057 67434057 C T ALDH3B2 Missense_Mutation p.A47T 0.16 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 11 77911710 77911710 C - USP35 Frame_Shift_Del p.M354Wfs*119 0.35 TCGA-EW-A1IZ-01 11 88911273 88911273 G A TYR Missense_Mutation p.G51D 0.33 deleterious(0) possibly_damaging(0.792) TCGA-EW-A1IZ-01 11 92534769 92534769 G T FAT3 Nonsense_Mutation p.E2864* 0.14 TCGA-EW-A1IZ-01 11 93431088 93431088 T A KIAA1731 Missense_Mutation p.F1004I 0.17 deleterious(0.01) possibly_damaging(0.844) TCGA-EW-A1IZ-01 12 104129268 104129268 G T STAB2 Splice_Site p.X1821_splice 0.19 TCGA-EW-A1IZ-01 12 105151273 105151273 C T CHST11 Missense_Mutation p.R251W 0.16 deleterious(0) probably_damaging(0.965) TCGA-EW-A1IZ-01 12 108090359 108090359 C T PWP1 Missense_Mutation p.T204I 0.11 tolerated(0.07) benign(0.004) TCGA-EW-A1IZ-01 12 113826338 113826338 G A PLBD2 Silent p.P559P 0.27 TCGA-EW-A1IZ-01 12 117680511 117680511 C T NOS1 Splice_Site p.X1022_splice 0.14 TCGA-EW-A1IZ-01 12 118481027 118481027 C T WSB2 Missense_Mutation p.R113H 0.11 tolerated(0.09) possibly_damaging(0.493) TCGA-EW-A1IZ-01 12 121853973 121853973 G A RNF34 Silent p.T7T 0.13 TCGA-EW-A1IZ-01 12 122263255 122263255 C - SETD1B Frame_Shift_Del p.A1733Qfs*6 0.43 TCGA-EW-A1IZ-01 12 123519107 123519107 G A PITPNM2 Missense_Mutation p.P11S 0.18 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 12 124111634 124111634 G A EIF2B1 Nonsense_Mutation p.R147* 0.10 TCGA-EW-A1IZ-01 12 130892333 130892333 G A RIMBP2 Missense_Mutation p.R955W 0.18 deleterious(0) possibly_damaging(0.873) TCGA-EW-A1IZ-01 12 14948019 14948019 A G WBP11 Missense_Mutation p.V136A 0.17 tolerated(0.13) unknown(0) TCGA-EW-A1IZ-01 12 27475300 27475300 G T STK38L Missense_Mutation p.W436L 0.17 tolerated(1) benign(0.026) TCGA-EW-A1IZ-01 12 30904069 30904069 T C CAPRIN2 Splice_Site p.X141_splice 0.16 TCGA-EW-A1IZ-01 12 32903765 32903765 G A YARS2 Missense_Mutation p.H331Y 0.17 tolerated(0.11) benign(0.179) TCGA-EW-A1IZ-01 12 34179103 34179103 A G ALG10 Silent p.G225G 0.15 TCGA-EW-A1IZ-01 12 46320516 46320517 - T SCAF11 Frame_Shift_Ins p.E990Rfs*5 0.26 TCGA-EW-A1IZ-01 12 4870281 4870281 T C GALNT8 Missense_Mutation p.V444A 0.16 deleterious(0) probably_damaging(0.951) TCGA-EW-A1IZ-01 12 51754571 51754571 C T GALNT6 Silent p.E367E 0.10 TCGA-EW-A1IZ-01 12 53460381 53460381 G - SPRYD3 Frame_Shift_Del p.R333Gfs*18 0.26 TCGA-EW-A1IZ-01 12 53775933 53775933 T C SP1 Missense_Mutation p.C68R 0.19 deleterious(0) possibly_damaging(0.831) TCGA-EW-A1IZ-01 12 54757017 54757017 G A GPR84 Nonsense_Mutation p.R207* 0.09 TCGA-EW-A1IZ-01 12 56492633 56492633 A G ERBB3 Missense_Mutation p.E928G 0.15 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 12 56572801 56572801 C T SMARCC2 Missense_Mutation p.G374D 0.14 deleterious(0.05) probably_damaging(0.931) TCGA-EW-A1IZ-01 12 56814908 56814908 G A TIMELESS Missense_Mutation p.A960V 0.12 tolerated(0.26) benign(0.004) TCGA-EW-A1IZ-01 12 62786055 62786056 TT - USP15 Frame_Shift_Del p.F770* 0.39 TCGA-EW-A1IZ-01 12 64588111 64588111 A C C12orf66 Silent p.A283A 0.08 TCGA-EW-A1IZ-01 12 68050943 68050943 G A DYRK2 Missense_Mutation p.G86R 0.09 deleterious_low_confidence(0) benign(0.285) TCGA-EW-A1IZ-01 12 72300883 72300883 T - TBC1D15 Frame_Shift_Del p.L440* 0.29 TCGA-EW-A1IZ-01 12 81102372 81102372 C T MYF6 Missense_Mutation p.L197F 0.24 tolerated(0.76) possibly_damaging(0.77) TCGA-EW-A1IZ-01 13 103382857 103382857 T C CCDC168 Silent p.K2101K 0.10 TCGA-EW-A1IZ-01 13 109318399 109318399 G T MYO16 Missense_Mutation p.G43V 0.12 deleterious(0) probably_damaging(0.979) TCGA-EW-A1IZ-01 13 113088826 113088826 G T SPACA7 Missense_Mutation p.R184M 0.26 deleterious_low_confidence(0.02) benign(0.341) TCGA-EW-A1IZ-01 13 114303781 114303781 C T ATP4B Missense_Mutation p.V262M 0.23 tolerated(0.08) benign(0.117) TCGA-EW-A1IZ-01 13 21362688 21362689 - T XPO4 Frame_Shift_Ins p.I995Nfs*6 0.50 TCGA-EW-A1IZ-01 13 24460601 24460601 A G MIPEP Silent p.H78H 0.15 TCGA-EW-A1IZ-01 13 29600608 29600608 C T MTUS2 Silent p.N601N 0.23 TCGA-EW-A1IZ-01 13 36445388 36445388 T C DCLK1 Missense_Mutation p.S305G 0.09 tolerated(0.13) benign(0.294) TCGA-EW-A1IZ-01 13 39603474 39603474 T C PROSER1 Missense_Mutation p.I73M 0.21 deleterious(0) probably_damaging(0.997) TCGA-EW-A1IZ-01 13 48563103 48563103 G A SUCLA2 Silent p.V95V 0.13 TCGA-EW-A1IZ-01 13 50050946 50050946 A G SETDB2 Missense_Mutation p.T226A 0.14 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 13 70681595 70681595 C T KLHL1 Silent p.S79S 0.14 TCGA-EW-A1IZ-01 13 77669522 77669522 C T MYCBP2 Missense_Mutation p.M3352I 0.12 possibly_damaging(0.746) TCGA-EW-A1IZ-01 13 99512662 99512662 T C DOCK9 Missense_Mutation p.I1232V 0.10 tolerated(0.47) benign(0.061) TCGA-EW-A1IZ-01 14 50272836 50272836 G - NEMF Frame_Shift_Del p.P587Hfs*4 0.46 TCGA-EW-A1IZ-01 14 57749707 57749707 C T AP5M1 Nonsense_Mutation p.R382* 0.18 TCGA-EW-A1IZ-01 14 60591797 60591798 TT - PCNXL4 Frame_Shift_Del p.F736Lfs*11 0.28 TCGA-EW-A1IZ-01 14 75572697 75572697 G A NEK9 Nonsense_Mutation p.R511* 0.28 TCGA-EW-A1IZ-01 14 94391640 94391641 - T FAM181A Frame_Shift_Ins p.S9Ffs*6 0.40 TCGA-EW-A1IZ-01 14 99981565 99981565 G A CCDC85C 3'UTR 0.22 TCGA-EW-A1IZ-01 15 23335648 23335648 A - HERC2P2 RNA 0.34 TCGA-EW-A1IZ-01 15 29367161 29367161 G A APBA2 Missense_Mutation p.R330H 0.13 tolerated_low_confidence(0.09) benign(0.225) TCGA-EW-A1IZ-01 15 34049768 34049768 C A RYR3 Silent p.A2892A 0.17 TCGA-EW-A1IZ-01 15 34156378 34156378 G A RYR3 Silent p.E4835E 0.17 TCGA-EW-A1IZ-01 15 41341604 41341604 C T INO80 Silent p.P819P 0.09 TCGA-EW-A1IZ-01 15 56388765 56388765 G A RFX7 Silent p.D387D 0.11 TCGA-EW-A1IZ-01 15 56723678 56723678 A G MNS1 Missense_Mutation p.W430R 0.18 tolerated(1) benign(0.003) TCGA-EW-A1IZ-01 15 67358560 67358560 A G SMAD3 Missense_Mutation p.Q23R 0.13 deleterious(0.01) benign(0.091) TCGA-EW-A1IZ-01 15 69718673 69718673 A G KIF23 Splice_Site p.X283_splice 0.10 TCGA-EW-A1IZ-01 15 72119094 72119094 T C MYO9A Missense_Mutation p.T2492A 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.81) TCGA-EW-A1IZ-01 15 72958695 72958696 - T GOLGA6B 3'UTR 0.23 TCGA-EW-A1IZ-01 15 78211297 78211297 C T RP11-114H24.7 Intron 0.16 TCGA-EW-A1IZ-01 15 83240148 83240148 G A CPEB1 Nonsense_Mutation p.R109* 0.17 TCGA-EW-A1IZ-01 15 90348325 90348325 G A ANPEP Missense_Mutation p.A294V 0.19 tolerated(0.35) benign(0.014) TCGA-EW-A1IZ-01 15 91456857 91456857 G A MAN2A2 Missense_Mutation p.R911Q 0.21 tolerated(0.18) benign(0.047) TCGA-EW-A1IZ-01 16 1248638 1248638 C G CACNA1H Missense_Mutation p.L223V 0.30 deleterious(0.01) possibly_damaging(0.617) TCGA-EW-A1IZ-01 16 18795983 18795983 A - RPS15A Intron 0.43 TCGA-EW-A1IZ-01 16 20448431 20448431 C T ACSM5 Nonsense_Mutation p.R456* 0.11 TCGA-EW-A1IZ-01 16 20810246 20810246 T - ERI2 Frame_Shift_Del p.V293Ffs*3 0.42 TCGA-EW-A1IZ-01 16 22545718 22545718 C T NPIPB5 Missense_Mutation p.P472S 0.31 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-EW-A1IZ-01 16 28877975 28877975 C T SH2B1 Missense_Mutation p.T187I 0.25 tolerated(0.1) possibly_damaging(0.706) TCGA-EW-A1IZ-01 16 28884971 28884971 G A SH2B1 Missense_Mutation p.V701M 0.11 tolerated_low_confidence(0.21) benign(0) TCGA-EW-A1IZ-01 16 29913110 29913110 G A ASPHD1 Missense_Mutation p.R273Q 0.31 deleterious(0.02) probably_damaging(0.933) TCGA-EW-A1IZ-01 16 30616175 30616175 C T ZNF689 Missense_Mutation p.V305I 0.10 tolerated(0.76) possibly_damaging(0.897) TCGA-EW-A1IZ-01 16 32892063 32892063 C - SLC6A10P RNA 0.48 TCGA-EW-A1IZ-01 16 4700414 4700414 C - MGRN1 Frame_Shift_Del p.H48Tfs*13 0.46 TCGA-EW-A1IZ-01 16 48232053 48232053 G A ABCC11 Missense_Mutation p.S739L 0.09 tolerated(0.22) benign(0.018) TCGA-EW-A1IZ-01 16 5046950 5046950 G A SEC14L5 Missense_Mutation p.R292H 0.17 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 16 53706790 53706792 TTC - RPGRIP1L In_Frame_Del p.R340del 0.71 TCGA-EW-A1IZ-01 16 68849663 68849663 G A CDH1 Splice_Site p.X522_splice 0.31 TCGA-EW-A1IZ-01 16 69965781 69965781 G T WWP2 Missense_Mutation p.G557V 0.25 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 16 84088175 84088175 A G MBTPS1 Missense_Mutation p.V1013A 0.12 tolerated_low_confidence(0.17) benign(0.1) TCGA-EW-A1IZ-01 17 10549037 10549037 C T MYH3 Silent p.P376P 0.21 TCGA-EW-A1IZ-01 17 11584201 11584201 G A DNAH9 Silent p.P1246P 0.15 TCGA-EW-A1IZ-01 17 11835446 11835446 G A DNAH9 Missense_Mutation p.R4074H 0.10 probably_damaging(0.989) TCGA-EW-A1IZ-01 17 15995175 15995175 A G NCOR1 Splice_Site p.X1006_splice 0.12 TCGA-EW-A1IZ-01 17 16735959 16735959 C T KRT16P2 RNA 0.16 TCGA-EW-A1IZ-01 17 2597292 2597292 T C CLUH Missense_Mutation p.N1006D 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-EW-A1IZ-01 17 27043039 27043039 A G RAB34 Missense_Mutation p.S119P 0.09 tolerated(0.08) probably_damaging(0.911) TCGA-EW-A1IZ-01 17 27239621 27239621 A T PHF12 Missense_Mutation p.D656E 0.14 tolerated(0.92) benign(0.002) TCGA-EW-A1IZ-01 17 29632567 29632567 A - EVI2B Frame_Shift_Del p.S21Qfs*92 0.47 TCGA-EW-A1IZ-01 17 33289332 33289332 T - ZNF830 Frame_Shift_Del p.F251Lfs*6 0.46 TCGA-EW-A1IZ-01 17 33953640 33953640 C T AP2B1 Silent p.S239S 0.19 TCGA-EW-A1IZ-01 17 38449856 38449857 AT - CDC6 Frame_Shift_Del p.M271Dfs*31 0.29 TCGA-EW-A1IZ-01 17 39137136 39137136 C T KRT40 Silent p.L292L 0.15 TCGA-EW-A1IZ-01 17 3919737 3919737 G A ZZEF1 Silent p.G2675G 0.15 TCGA-EW-A1IZ-01 17 39525757 39525757 C T KRT33B Silent p.A82A 0.14 TCGA-EW-A1IZ-01 17 40141457 40141457 C T DNAJC7 Missense_Mutation p.A240T 0.14 tolerated(0.05) possibly_damaging(0.493) TCGA-EW-A1IZ-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.23 TCGA-EW-A1IZ-01 17 58988000 58988000 G A BCAS3 Silent p.R310R 0.15 TCGA-EW-A1IZ-01 17 61176555 61176555 C T TANC2 Silent p.S53S 0.17 TCGA-EW-A1IZ-01 17 61498332 61498332 A G TANC2 Silent p.S1663S 0.17 TCGA-EW-A1IZ-01 17 62019291 62019291 G A SCN4A Missense_Mutation p.R1451C 0.15 deleterious(0) probably_damaging(0.955) TCGA-EW-A1IZ-01 17 67246059 67246059 A - ABCA5 Frame_Shift_Del p.F1584Lfs*27 0.11 TCGA-EW-A1IZ-01 17 74712590 74712590 T C JMJD6 3'UTR 0.29 TCGA-EW-A1IZ-01 17 7810250 7810250 G A CHD3 Missense_Mutation p.A1582T 0.13 possibly_damaging(0.499) TCGA-EW-A1IZ-01 17 78109862 78109862 C T EIF4A3 Missense_Mutation p.R387H 0.20 deleterious(0.03) benign(0.015) TCGA-EW-A1IZ-01 18 14542797 14542797 C T POTEC Missense_Mutation p.V117M 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-EW-A1IZ-01 18 18539823 18539823 G A ROCK1 Missense_Mutation p.P1164S 0.16 deleterious(0) probably_damaging(0.994) TCGA-EW-A1IZ-01 18 21735866 21735866 C T CABYR Missense_Mutation p.T134M 0.18 tolerated(0.08) possibly_damaging(0.729) TCGA-EW-A1IZ-01 18 225119 225119 G - THOC1 Frame_Shift_Del p.D370Mfs*9 0.51 TCGA-EW-A1IZ-01 18 2929124 2929124 C T LPIN2 Missense_Mutation p.E497K 0.17 deleterious(0.03) possibly_damaging(0.848) TCGA-EW-A1IZ-01 18 29437574 29437574 A C TRAPPC8 Silent p.P1039P 0.29 TCGA-EW-A1IZ-01 18 30267118 30267118 C A KLHL14 Missense_Mutation p.R413I 0.15 deleterious(0.01) possibly_damaging(0.829) TCGA-EW-A1IZ-01 18 33282944 33282944 T C GALNT1 Silent p.G461G 0.10 TCGA-EW-A1IZ-01 18 42532994 42532994 C T SETBP1 Missense_Mutation p.T1230I 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-EW-A1IZ-01 18 47800631 47800631 G A MBD1 Silent p.C357C 0.25 TCGA-EW-A1IZ-01 18 51729440 51729440 C T MBD2 Intron 0.11 TCGA-EW-A1IZ-01 18 60207019 60207019 C T ZCCHC2 Nonsense_Mutation p.R349* 0.12 TCGA-EW-A1IZ-01 18 60242302 60242302 C T ZCCHC2 Silent p.N996N 0.07 TCGA-EW-A1IZ-01 18 9255427 9255427 A - ANKRD12 Frame_Shift_Del p.K723Nfs*45 0.13 TCGA-EW-A1IZ-01 19 2185914 2185914 C A DOT1L Missense_Mutation p.D62E 0.11 deleterious(0.03) possibly_damaging(0.707) TCGA-EW-A1IZ-01 19 3576912 3576912 C T HMG20B Silent p.R205R 0.23 TCGA-EW-A1IZ-01 19 35994348 35994348 T C DMKN Intron 0.20 TCGA-EW-A1IZ-01 19 38876108 38876108 G A GGN Silent p.C598C 0.19 TCGA-EW-A1IZ-01 19 38987176 38987176 G A RYR1 Missense_Mutation p.G2264D 0.33 benign(0.291) TCGA-EW-A1IZ-01 19 40542427 40542427 G A ZNF780B Silent p.L113L 0.18 TCGA-EW-A1IZ-01 19 42853706 42853706 G A MEGF8 Missense_Mutation p.R718H 0.19 deleterious(0.02) possibly_damaging(0.814) TCGA-EW-A1IZ-01 19 44252160 44252160 G - SMG9 Frame_Shift_Del p.I66Sfs*36 0.64 TCGA-EW-A1IZ-01 19 45448439 45448439 C T APOC4 Silent p.D87D 0.18 TCGA-EW-A1IZ-01 19 47653513 47653513 C T SAE1 Nonsense_Mutation p.R89* 0.14 TCGA-EW-A1IZ-01 19 47884112 47884112 C T DHX34 Nonsense_Mutation p.Q1008* 0.17 TCGA-EW-A1IZ-01 19 49651945 49651945 A G PPFIA3 Missense_Mutation p.M1012V 0.17 deleterious(0.01) benign(0.26) TCGA-EW-A1IZ-01 19 50838201 50838201 C T NAPSB RNA 0.21 TCGA-EW-A1IZ-01 19 52496388 52496388 T C ZNF615 Silent p.T658T 0.10 TCGA-EW-A1IZ-01 19 53612925 53612925 G A ZNF415 Missense_Mutation p.R125C 0.16 tolerated(0.14) benign(0) TCGA-EW-A1IZ-01 19 5867314 5867314 C A FUT5 Missense_Mutation p.Q141H 0.21 tolerated(0.14) benign(0.004) TCGA-EW-A1IZ-01 19 58946279 58946279 C T ZNF132 Missense_Mutation p.A178T 0.22 tolerated(0.09) benign(0.019) TCGA-EW-A1IZ-01 1 104117917 104117917 A G AMY2B Silent p.Q317Q 0.13 TCGA-EW-A1IZ-01 1 10502382 10502382 C A APITD1 Intron 0.11 TCGA-EW-A1IZ-01 1 10678421 10678421 G A PEX14 Missense_Mutation p.A111T 0.16 deleterious(0.03) probably_damaging(1) TCGA-EW-A1IZ-01 1 118693199 118693199 T - SPAG17 Frame_Shift_Del p.K94Nfs*3 0.26 TCGA-EW-A1IZ-01 1 12030842 12030842 C T PLOD1 Missense_Mutation p.T624M 0.22 deleterious(0) possibly_damaging(0.776) TCGA-EW-A1IZ-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.61 TCGA-EW-A1IZ-01 1 151062933 151062933 G A GABPB2 Missense_Mutation p.A54T 0.09 tolerated(0.16) benign(0.247) TCGA-EW-A1IZ-01 1 155448916 155448917 TA - ASH1L Frame_Shift_Del p.H1248Qfs*5 0.43 TCGA-EW-A1IZ-01 1 155984778 155984778 G T SSR2 Missense_Mutation p.L113M 0.11 tolerated(0.24) benign(0.197) TCGA-EW-A1IZ-01 1 156446980 156446980 T C MEF2D Missense_Mutation p.S227G 0.21 tolerated(0.06) benign(0.123) TCGA-EW-A1IZ-01 1 1573880 1573880 C T CDK11B Missense_Mutation p.A445T 0.13 unknown(0) TCGA-EW-A1IZ-01 1 1573953 1573953 C A CDK11B Splice_Site p.X421_splice 0.09 TCGA-EW-A1IZ-01 1 15906613 15906613 G A AGMAT Missense_Mutation p.P167L 0.09 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 1 16256950 16256950 T - SPEN Frame_Shift_Del p.L1407Yfs*2 0.45 TCGA-EW-A1IZ-01 1 167086745 167086745 C T DUSP27 Missense_Mutation p.A129V 0.21 deleterious(0.04) benign(0.03) TCGA-EW-A1IZ-01 1 168168159 168168159 T C TIPRL Silent p.A205A 0.14 TCGA-EW-A1IZ-01 1 168169164 168169164 G A TIPRL Silent p.T233T 0.09 TCGA-EW-A1IZ-01 1 179077772 179077772 G A ABL2 Missense_Mutation p.P877L 0.14 deleterious_low_confidence(0.01) benign(0.001) TCGA-EW-A1IZ-01 1 179316757 179316757 T - SOAT1 Frame_Shift_Del p.F382Lfs*69 0.28 TCGA-EW-A1IZ-01 1 179959671 179959671 A G CEP350 Silent p.V50V 0.09 TCGA-EW-A1IZ-01 1 181690990 181690990 G A CACNA1E Missense_Mutation p.V685M 0.18 deleterious(0) benign(0.075) TCGA-EW-A1IZ-01 1 197169434 197169437 GAGG - ZBTB41 Frame_Shift_Del p.P56Lfs*8 0.55 TCGA-EW-A1IZ-01 1 203194885 203194885 C T CHIT1 Missense_Mutation p.A57T 0.10 deleterious(0.02) possibly_damaging(0.673) TCGA-EW-A1IZ-01 1 21180137 21180137 C T EIF4G3 Missense_Mutation p.R1106K 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-EW-A1IZ-01 1 214814654 214814654 G A CENPF Missense_Mutation p.M991I 0.20 benign(0.001) TCGA-EW-A1IZ-01 1 214818858 214818858 A - CENPF Frame_Shift_Del p.M1984* 0.21 TCGA-EW-A1IZ-01 1 215342695 215342695 C T KCNK2 Missense_Mutation p.T210M 0.21 tolerated(0.75) benign(0.004) TCGA-EW-A1IZ-01 1 216172402 216172402 T C USH2A Splice_Site p.X2162_splice 0.15 TCGA-EW-A1IZ-01 1 222906001 222906001 C A BROX Missense_Mutation p.P394H 0.19 deleterious(0) benign(0.019) TCGA-EW-A1IZ-01 1 22310304 22310304 C T CELA3B Silent p.T160T 0.20 TCGA-EW-A1IZ-01 1 223934727 223934727 G - CAPN2 Frame_Shift_Del p.G198Vfs*20 0.47 TCGA-EW-A1IZ-01 1 223991930 223991931 - T TP53BP2 Frame_Shift_Ins p.V199Sfs*5 0.16 TCGA-EW-A1IZ-01 1 224872505 224872505 G A CNIH3 Missense_Mutation p.R53Q 0.16 deleterious_low_confidence(0.03) probably_damaging(0.936) TCGA-EW-A1IZ-01 1 225446944 225446944 A - DNAH14 Frame_Shift_Del p.K2378Nfs*5 0.21 TCGA-EW-A1IZ-01 1 228481236 228481236 C T OBSCN Missense_Mutation p.R4113C 0.24 benign(0.06) TCGA-EW-A1IZ-01 1 228612752 228612752 G A HIST3H3 Missense_Mutation p.A92V 0.16 deleterious_low_confidence(0) benign(0.04) TCGA-EW-A1IZ-01 1 231362778 231362778 A G C1orf131 Missense_Mutation p.Y183H 0.08 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 1 248790131 248790131 A G OR2T11 Missense_Mutation p.L100P 0.36 deleterious(0) possibly_damaging(0.474) TCGA-EW-A1IZ-01 1 26764736 26764736 G A DHDDS Silent p.R47R 0.11 TCGA-EW-A1IZ-01 1 27189737 27189737 C T SFN Silent p.L12L 0.29 TCGA-EW-A1IZ-01 1 33233495 33233495 C - KIAA1522 Frame_Shift_Del p.H117Tfs*24 0.55 TCGA-EW-A1IZ-01 1 38023344 38023344 C T DNALI1 Silent p.P96P 0.19 TCGA-EW-A1IZ-01 1 38265584 38265584 C T MANEAL Silent p.G361G 0.21 TCGA-EW-A1IZ-01 1 43215952 43215952 G A LEPRE1 Missense_Mutation p.T542M 0.22 deleterious(0) probably_damaging(0.975) TCGA-EW-A1IZ-01 1 44461500 44461500 G A CCDC24 Missense_Mutation p.G225R 0.17 tolerated(0.75) benign(0) TCGA-EW-A1IZ-01 1 47110887 47110887 A - ATPAF1 Frame_Shift_Del p.F233Lfs*2 0.09 TCGA-EW-A1IZ-01 1 47650716 47650716 A G PDZK1IP1 Missense_Mutation p.V77A 0.19 tolerated(0.63) benign(0.001) TCGA-EW-A1IZ-01 1 53362256 53362256 C T ECHDC2 Missense_Mutation p.R272Q 0.30 tolerated(0.21) benign(0.058) TCGA-EW-A1IZ-01 1 53681666 53681668 CTC - C1orf123 In_Frame_Del p.E134del 0.33 TCGA-EW-A1IZ-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.61 TCGA-EW-A1IZ-01 1 5925191 5925191 C T NPHP4 Missense_Mutation p.A1263T 0.28 deleterious(0.01) probably_damaging(0.955) TCGA-EW-A1IZ-01 1 84383324 84383324 T - TTLL7 Frame_Shift_Del p.K517Sfs*2 0.26 TCGA-EW-A1IZ-01 1 89448795 89448795 G A RBMXL1 Nonsense_Mutation p.R239* 0.18 TCGA-EW-A1IZ-01 1 91404532 91404532 G A ZNF644 Silent p.D793D 0.14 TCGA-EW-A1IZ-01 1 94342201 94342201 C T DNTTIP2 Silent p.A430A 0.23 TCGA-EW-A1IZ-01 1 95492695 95492695 T G ALG14 Missense_Mutation p.K137T 0.08 tolerated(0.07) possibly_damaging(0.71) TCGA-EW-A1IZ-01 1 99157130 99157130 C T SNX7 Missense_Mutation p.R172C 0.20 deleterious(0) probably_damaging(0.987) TCGA-EW-A1IZ-01 20 2840965 2840965 G T VPS16 Silent p.L107L 0.15 TCGA-EW-A1IZ-01 20 30064292 30064292 G A REM1 Missense_Mutation p.R15Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 20 45855964 45855964 C T ZMYND8 Missense_Mutation p.E954K 0.22 tolerated(0.07) probably_damaging(0.998) TCGA-EW-A1IZ-01 20 49510804 49510805 - T ADNP Frame_Shift_Ins p.N149Kfs*2 0.30 TCGA-EW-A1IZ-01 20 55940493 55940493 G A RAE1 Missense_Mutation p.A124T 0.17 deleterious(0.01) probably_damaging(0.951) TCGA-EW-A1IZ-01 21 16337639 16337639 C T NRIP1 Missense_Mutation p.D959N 0.14 tolerated(0.28) benign(0.012) TCGA-EW-A1IZ-01 21 31588278 31588278 C T CLDN8 5'UTR 0.27 TCGA-EW-A1IZ-01 21 34030032 34030032 T C SYNJ1 Missense_Mutation p.R858G 0.12 deleterious(0.01) benign(0.258) TCGA-EW-A1IZ-01 21 37620791 37620791 G A DOPEY2 Silent p.E1641E 0.10 TCGA-EW-A1IZ-01 21 37741431 37741431 G A MORC3 Missense_Mutation p.A589T 0.08 tolerated(0.32) benign(0.003) TCGA-EW-A1IZ-01 21 40570950 40570950 A T BRWD1 Missense_Mutation p.S1798T 0.12 tolerated_low_confidence(0.32) benign(0.019) TCGA-EW-A1IZ-01 21 40800267 40800267 A G LCA5L Silent p.Y51Y 0.09 TCGA-EW-A1IZ-01 22 17583062 17583062 C T IL17RA Missense_Mutation p.T211I 0.22 tolerated(0.13) benign(0.004) TCGA-EW-A1IZ-01 22 18070764 18070764 G A SLC25A18 Missense_Mutation p.G217S 0.15 tolerated(0.17) possibly_damaging(0.754) TCGA-EW-A1IZ-01 22 20970636 20970636 G A SMPD4P1 RNA 0.21 TCGA-EW-A1IZ-01 22 22677326 22677327 CA - IGLV1-51 Frame_Shift_Del p.T119Sfs*? 0.38 TCGA-EW-A1IZ-01 22 24584283 24584283 G T SUSD2 Missense_Mutation p.R811M 0.26 deleterious(0) probably_damaging(0.962) TCGA-EW-A1IZ-01 22 38341135 38341135 G A C22orf23 Missense_Mutation p.T132I 0.11 deleterious(0.01) possibly_damaging(0.493) TCGA-EW-A1IZ-01 22 39482474 39482474 T C APOBEC3G Missense_Mutation p.I309T 0.08 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 22 40717093 40717093 G T TNRC6B Splice_Site p.X1659_splice 0.19 TCGA-EW-A1IZ-01 22 40755272 40755272 G A ADSL Silent p.Q221Q 0.21 TCGA-EW-A1IZ-01 22 44385035 44385035 C A SAMM50 Missense_Mutation p.L374I 0.20 deleterious(0.04) benign(0.21) TCGA-EW-A1IZ-01 22 46640993 46640993 G A CDPF1 Missense_Mutation p.T123M 0.16 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-EW-A1IZ-01 22 50471764 50471764 G A TTLL8 Missense_Mutation p.L400F 0.26 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 22 50584153 50584153 C T MOV10L1 Silent p.D847D 0.14 TCGA-EW-A1IZ-01 22 50722142 50722142 C T PLXNB2 Missense_Mutation p.R820H 0.19 tolerated(0.17) benign(0.037) TCGA-EW-A1IZ-01 2 100019501 100019501 T - REV1 Frame_Shift_Del p.T1079Pfs*12 0.54 TCGA-EW-A1IZ-01 2 10188309 10188309 C T KLF11 Missense_Mutation p.A282V 0.12 tolerated(0.08) benign(0.025) TCGA-EW-A1IZ-01 2 102988445 102988445 T C IL18R1 Missense_Mutation p.I112T 0.12 tolerated(0.35) benign(0.015) TCGA-EW-A1IZ-01 2 103321037 103321037 A G SLC9A2 Missense_Mutation p.D627G 0.21 deleterious(0.04) benign(0.005) TCGA-EW-A1IZ-01 2 109432417 109432417 T C CCDC138 Silent p.V354V 0.17 TCGA-EW-A1IZ-01 2 120060116 120060116 T C C2orf76 Missense_Mutation p.T105A 0.10 deleterious(0.01) possibly_damaging(0.777) TCGA-EW-A1IZ-01 2 128408695 128408695 G A GPR17 Missense_Mutation p.R157H 0.13 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 2 128408826 128408826 G A GPR17 Missense_Mutation p.V201M 0.19 tolerated(0.1) benign(0.418) TCGA-EW-A1IZ-01 2 1312322 1312322 C T SNTG2 Silent p.F447F 0.14 TCGA-EW-A1IZ-01 2 131904372 131904372 G T PLEKHB2 3'UTR 0.15 TCGA-EW-A1IZ-01 2 141607771 141607771 G A LRP1B Silent p.F1613F 0.18 TCGA-EW-A1IZ-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.20 TCGA-EW-A1IZ-01 2 1520723 1520723 G A TPO Missense_Mutation p.A863T 0.19 deleterious(0.02) benign(0.33) TCGA-EW-A1IZ-01 2 163130328 163130328 T C IFIH1 Missense_Mutation p.T811A 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-EW-A1IZ-01 2 171822527 171822527 C - GORASP2 Frame_Shift_Del p.T418Lfs*74 0.28 TCGA-EW-A1IZ-01 2 172930997 172930997 C A METAP1D Missense_Mutation p.P168H 0.11 deleterious(0) probably_damaging(0.984) TCGA-EW-A1IZ-01 2 176996277 176996277 C T HOXD8 Silent p.D270D 0.21 TCGA-EW-A1IZ-01 2 179396929 179396929 G A TTN Nonsense_Mutation p.R34805* 0.10 TCGA-EW-A1IZ-01 2 180809917 180809917 G A CWC22 Missense_Mutation p.S889F 0.18 tolerated_low_confidence(0.43) probably_damaging(0.996) TCGA-EW-A1IZ-01 2 183032939 183032939 G A PDE1A Intron 0.10 TCGA-EW-A1IZ-01 2 183703303 183703303 G A FRZB Missense_Mutation p.H211Y 0.16 deleterious(0.03) possibly_damaging(0.844) TCGA-EW-A1IZ-01 2 190647159 190647159 T C ORMDL1 Missense_Mutation p.I55V 0.20 tolerated(0.39) probably_damaging(0.986) TCGA-EW-A1IZ-01 2 202068473 202068473 G A CASP10 Silent p.K235K 0.07 TCGA-EW-A1IZ-01 2 21233643 21233643 G A APOB Missense_Mutation p.P2033S 0.13 probably_damaging(0.996) TCGA-EW-A1IZ-01 2 219252307 219252307 T - SLC11A1 Frame_Shift_Del p.F199Lfs*5 0.29 TCGA-EW-A1IZ-01 2 230377642 230377643 - A DNER Frame_Shift_Ins p.S335Ffs*5 0.26 TCGA-EW-A1IZ-01 2 32726865 32726865 A G BIRC6 Missense_Mutation p.I3039M 0.08 probably_damaging(0.993) TCGA-EW-A1IZ-01 2 37349649 37349649 C A EIF2AK2 Missense_Mutation p.R356M 0.10 deleterious(0) possibly_damaging(0.879) TCGA-EW-A1IZ-01 2 46609673 46609673 C - EPAS1 Frame_Shift_Del p.P801Hfs*39 0.24 TCGA-EW-A1IZ-01 2 70188297 70188297 G A ASPRV1 Missense_Mutation p.P175L 0.20 tolerated(0.05) benign(0.254) TCGA-EW-A1IZ-01 2 70905920 70905920 C A ADD2 Missense_Mutation p.W433C 0.19 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 2 70906014 70906014 G A ADD2 Missense_Mutation p.A402V 0.23 deleterious(0) probably_damaging(0.981) TCGA-EW-A1IZ-01 2 74275076 74275076 C - TET3 Frame_Shift_Del p.P544Lfs*5 0.31 TCGA-EW-A1IZ-01 2 74607184 74607184 C - DCTN1 5'UTR 0.32 TCGA-EW-A1IZ-01 2 85922455 85922455 C T GNLY Missense_Mutation p.S22F 0.15 deleterious(0) probably_damaging(0.962) TCGA-EW-A1IZ-01 2 86677038 86677038 C T KDM3A Nonsense_Mutation p.R99* 0.09 TCGA-EW-A1IZ-01 2 89104254 89104254 A - ANKRD36BP2 RNA 0.16 TCGA-EW-A1IZ-01 2 90139529 90139529 G A IGKV1D-16 Silent p.L100L 0.19 TCGA-EW-A1IZ-01 2 99449325 99449325 C A KIAA1211L Missense_Mutation p.Q125H 0.15 deleterious(0) benign(0.387) TCGA-EW-A1IZ-01 3 100605154 100605154 G A ABI3BP Missense_Mutation p.R166C 0.11 deleterious(0) possibly_damaging(0.689) TCGA-EW-A1IZ-01 3 123022988 123022988 G T ADCY5 Silent p.R829R 0.24 TCGA-EW-A1IZ-01 3 12421355 12421355 G A PPARG Missense_Mutation p.E79K 0.19 tolerated_low_confidence(0.26) benign(0.118) TCGA-EW-A1IZ-01 3 12626000 12626000 G T RAF1 3'UTR 0.15 TCGA-EW-A1IZ-01 3 129158619 129158619 C T MBD4 Missense_Mutation p.V20I 0.17 tolerated_low_confidence(0.23) benign(0.004) TCGA-EW-A1IZ-01 3 130743497 130743498 AA - ASTE1 Frame_Shift_Del p.F218Cfs*7 0.23 TCGA-EW-A1IZ-01 3 137843714 137843714 C T A4GNT Missense_Mutation p.A139T 0.09 tolerated(0.16) benign(0.003) TCGA-EW-A1IZ-01 3 14964007 14964007 C T FGD5 Silent p.C1253C 0.33 TCGA-EW-A1IZ-01 3 151095876 151095876 C T MED12L Silent p.L1430L 0.14 TCGA-EW-A1IZ-01 3 151100490 151100490 C T MED12L Missense_Mutation p.A1511V 0.15 tolerated(0.07) possibly_damaging(0.894) TCGA-EW-A1IZ-01 3 175184926 175184926 G - NAALADL2 Frame_Shift_Del p.G497Efs*35 0.48 TCGA-EW-A1IZ-01 3 178938775 178938775 T A PIK3CA Missense_Mutation p.S673T 0.13 deleterious(0.02) possibly_damaging(0.468) TCGA-EW-A1IZ-01 3 184072690 184072690 A G CLCN2 Splice_Site p.X466_splice 0.29 TCGA-EW-A1IZ-01 3 18436105 18436105 G - SATB1 Frame_Shift_Del p.P352Lfs*6 0.55 TCGA-EW-A1IZ-01 3 191109628 191109628 T - CCDC50 3'UTR 0.34 TCGA-EW-A1IZ-01 3 30713659 30713659 C T TGFBR2 Silent p.H353H 0.26 TCGA-EW-A1IZ-01 3 3098022 3098022 A G CNTN4 3'UTR 0.31 TCGA-EW-A1IZ-01 3 36896783 36896783 C T TRANK1 Missense_Mutation p.R1433H 0.25 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 3 3886447 3886447 G A LRRN1 Missense_Mutation p.R41H 0.15 deleterious(0) probably_damaging(0.985) TCGA-EW-A1IZ-01 3 49055971 49055971 C T DALRD3 Silent p.G9G 0.33 TCGA-EW-A1IZ-01 3 49162136 49162136 T C LAMB2 Missense_Mutation p.H1036R 0.22 tolerated(1) benign(0.001) TCGA-EW-A1IZ-01 3 51452257 51452257 C T VPRBP Missense_Mutation p.A791T 0.21 tolerated(0.08) benign(0.348) TCGA-EW-A1IZ-01 3 9825703 9825703 A T TADA3 Intron 0.19 TCGA-EW-A1IZ-01 4 102004357 102004357 T G PPP3CA Missense_Mutation p.E282D 0.15 deleterious(0.01) benign(0.141) TCGA-EW-A1IZ-01 4 113567544 113567545 - A LARP7 Frame_Shift_Ins p.L90Ifs*4 0.23 TCGA-EW-A1IZ-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.14 TCGA-EW-A1IZ-01 4 118005517 118005517 T - TRAM1L1 Frame_Shift_Del p.R345Efs*14 0.36 TCGA-EW-A1IZ-01 4 121739680 121739680 G A PRDM5 Missense_Mutation p.R160C 0.12 tolerated(0.18) benign(0) TCGA-EW-A1IZ-01 4 142651103 142651103 T A IL15 Missense_Mutation p.I115N 0.18 tolerated(0.2) probably_damaging(0.915) TCGA-EW-A1IZ-01 4 15689207 15689207 C T FAM200B Nonsense_Mutation p.R203* 0.21 TCGA-EW-A1IZ-01 4 16899985 16899985 G A LDB2 Missense_Mutation p.R42C 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-EW-A1IZ-01 4 183676017 183676017 A G TENM3 Silent p.S1499S 0.14 TCGA-EW-A1IZ-01 4 186382306 186382306 G A CCDC110 Missense_Mutation p.S82L 0.16 deleterious(0) benign(0.069) TCGA-EW-A1IZ-01 4 186423488 186423488 G - PDLIM3 Frame_Shift_Del p.P352Qfs*55 0.31 TCGA-EW-A1IZ-01 4 186551735 186551735 G T SORBS2 Silent p.S334S 0.12 TCGA-EW-A1IZ-01 4 22749085 22749085 T C GBA3 Silent p.S151S 0.12 TCGA-EW-A1IZ-01 4 3224119 3224119 A G HTT Missense_Mutation p.T2459A 0.15 benign(0.314) TCGA-EW-A1IZ-01 4 40123163 40123163 G A N4BP2 Silent p.S1144S 0.17 TCGA-EW-A1IZ-01 4 420088 420088 G A ABCA11P RNA 0.17 TCGA-EW-A1IZ-01 4 42403144 42403144 G A SHISA3 Silent p.Q131Q 0.18 TCGA-EW-A1IZ-01 4 515734 515734 C T PIGG Intron 0.17 TCGA-EW-A1IZ-01 4 56348918 56348918 G A CLOCK Missense_Mutation p.S12L 0.08 deleterious(0.03) benign(0.003) TCGA-EW-A1IZ-01 4 5721019 5721019 G A EVC Silent p.A73A 0.18 TCGA-EW-A1IZ-01 4 57268337 57268337 T C PPAT Silent p.T224T 0.20 TCGA-EW-A1IZ-01 4 5795342 5795342 T C EVC Missense_Mutation p.M595T 0.26 tolerated(0.23) benign(0.046) TCGA-EW-A1IZ-01 4 68528872 68528872 C T UBA6 Missense_Mutation p.R341H 0.13 tolerated(0.06) benign(0.006) TCGA-EW-A1IZ-01 4 73956492 73956492 A G ANKRD17 Missense_Mutation p.S2285P 0.10 benign(0.095) TCGA-EW-A1IZ-01 4 83347684 83347684 C T HNRNPDL Missense_Mutation p.G375D 0.09 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-EW-A1IZ-01 4 83891570 83891570 T C LIN54 Missense_Mutation p.I287M 0.14 tolerated(0.07) possibly_damaging(0.83) TCGA-EW-A1IZ-01 4 85654705 85654705 G A WDFY3 Silent p.L2351L 0.18 TCGA-EW-A1IZ-01 4 85741302 85741302 T - WDFY3 Frame_Shift_Del p.K543Nfs*11 0.13 TCGA-EW-A1IZ-01 4 89583670 89583670 A - HERC3 Frame_Shift_Del p.K413Nfs*48 0.47 TCGA-EW-A1IZ-01 4 90816237 90816237 A G MMRN1 Missense_Mutation p.M39V 0.12 tolerated_low_confidence(0.94) benign(0) TCGA-EW-A1IZ-01 5 123984089 123984089 T - ZNF608 Frame_Shift_Del p.K663Rfs*8 0.48 TCGA-EW-A1IZ-01 5 140209950 140209950 G A PCDHA6 Silent p.V758V 0.17 TCGA-EW-A1IZ-01 5 140223101 140223101 G A PCDHA8 Missense_Mutation p.C732Y 0.19 tolerated_low_confidence(0.08) benign(0.041) TCGA-EW-A1IZ-01 5 140431282 140431282 G A PCDHB1 Missense_Mutation p.R76Q 0.15 tolerated(1) possibly_damaging(0.674) TCGA-EW-A1IZ-01 5 140475245 140475245 C T PCDHB2 Missense_Mutation p.R291C 0.17 tolerated_low_confidence(0.11) benign(0.168) TCGA-EW-A1IZ-01 5 140615597 140615597 C T PCDHB18 RNA 0.19 TCGA-EW-A1IZ-01 5 140741848 140741848 C T PCDHGB2 Nonsense_Mutation p.R716* 0.12 TCGA-EW-A1IZ-01 5 140753950 140753950 G A PCDHGA6 Silent p.P100P 0.21 TCGA-EW-A1IZ-01 5 140783157 140783157 C T PCDHGA9 Missense_Mutation p.T213M 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.648) TCGA-EW-A1IZ-01 5 140869817 140869817 A G PCDHGC5 Missense_Mutation p.Q337R 0.14 tolerated(0.41) benign(0.114) TCGA-EW-A1IZ-01 5 141359789 141359789 G A RNF14 Silent p.P312P 0.09 TCGA-EW-A1IZ-01 5 145648800 145648800 A - RBM27 Frame_Shift_Del p.R830Dfs*5 0.29 TCGA-EW-A1IZ-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.18 TCGA-EW-A1IZ-01 5 154170243 154170243 T C LARP1 Silent p.P102P 0.11 TCGA-EW-A1IZ-01 5 156760455 156760455 G A CYFIP2 Splice_Site p.X769_splice 0.10 TCGA-EW-A1IZ-01 5 156766240 156766240 A G CYFIP2 Missense_Mutation p.Y828C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 5 157214890 157214890 G A CLINT1 Missense_Mutation p.P566S 0.17 tolerated_low_confidence(0.48) benign(0.001) TCGA-EW-A1IZ-01 5 16670996 16670996 T C MYO10 Missense_Mutation p.D1841G 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-EW-A1IZ-01 5 169805721 169805721 G A KCNMB1 Missense_Mutation p.A188V 0.28 deleterious(0.03) benign(0.313) TCGA-EW-A1IZ-01 5 179028899 179028899 C T RUFY1 Missense_Mutation p.R590W 0.12 deleterious(0.02) possibly_damaging(0.53) TCGA-EW-A1IZ-01 5 179992921 179992921 A - CNOT6 Frame_Shift_Del p.K222Rfs*8 0.35 TCGA-EW-A1IZ-01 5 180662333 180662333 C T TRIM41 3'UTR 0.12 TCGA-EW-A1IZ-01 5 21752109 21752109 C A CDH12 Nonsense_Mutation p.E708* 0.19 TCGA-EW-A1IZ-01 5 32088476 32088476 C T PDZD2 Missense_Mutation p.S1641L 0.17 tolerated(0.22) benign(0.001) TCGA-EW-A1IZ-01 5 32230235 32230235 G A MTMR12 Silent p.I631I 0.09 TCGA-EW-A1IZ-01 5 36985782 36985782 C T NIPBL Nonsense_Mutation p.R834* 0.14 TCGA-EW-A1IZ-01 5 38886285 38886285 T C OSMR Silent p.T328T 0.12 TCGA-EW-A1IZ-01 5 52402960 52402960 C T MOCS2 Silent p.T15T 0.12 TCGA-EW-A1IZ-01 5 54466481 54466481 T A CDC20B Intron 0.19 TCGA-EW-A1IZ-01 5 54624574 54624574 T C SKIV2L2 Silent p.C150C 0.14 TCGA-EW-A1IZ-01 5 54941671 54941671 A - SLC38A9 Frame_Shift_Del p.F371Lfs*10 0.44 TCGA-EW-A1IZ-01 5 55247413 55247413 G T IL6ST Silent p.S573S 0.10 TCGA-EW-A1IZ-01 5 61688028 61688029 - T DIMT1 Frame_Shift_Ins p.N254Kfs*10 0.11 TCGA-EW-A1IZ-01 5 63256897 63256897 C T HTR1A Missense_Mutation p.R217H 0.28 deleterious(0) probably_damaging(0.982) TCGA-EW-A1IZ-01 5 63257403 63257403 G A HTR1A Silent p.F48F 0.21 TCGA-EW-A1IZ-01 5 74973762 74973762 A G POC5 Missense_Mutation p.V474A 0.10 deleterious(0) probably_damaging(0.968) TCGA-EW-A1IZ-01 5 76028893 76028893 G A F2R Silent p.V281V 0.16 TCGA-EW-A1IZ-01 5 90151694 90151694 A G GPR98 Missense_Mutation p.T5911A 0.20 benign(0.001) TCGA-EW-A1IZ-01 5 93727356 93727358 CTC - KIAA0825 In_Frame_Del p.G1113del 0.40 TCGA-EW-A1IZ-01 5 94991896 94991896 T A RFESD Silent p.I172I 0.15 TCGA-EW-A1IZ-01 5 98236744 98236745 - T CHD1 Frame_Shift_Ins p.R211Efs*4 0.12 TCGA-EW-A1IZ-01 6 10911066 10911066 A G SYCP2L Silent p.S294S 0.13 TCGA-EW-A1IZ-01 6 109190033 109190033 A G ARMC2 Missense_Mutation p.K100E 0.18 deleterious(0.01) benign(0.265) TCGA-EW-A1IZ-01 6 109215690 109215690 C T ARMC2 Missense_Mutation p.A231V 0.16 tolerated(0.5) benign(0.001) TCGA-EW-A1IZ-01 6 117083229 117083229 C T FAM162B Missense_Mutation p.A101T 0.16 deleterious(0) probably_damaging(0.989) TCGA-EW-A1IZ-01 6 130031253 130031253 A G ARHGAP18 Missense_Mutation p.V10A 0.11 deleterious(0) probably_damaging(0.996) TCGA-EW-A1IZ-01 6 139269048 139269048 G A REPS1 Silent p.I52I 0.11 TCGA-EW-A1IZ-01 6 142490720 142490720 A G VTA1 Missense_Mutation p.T81A 0.08 deleterious(0.03) benign(0.438) TCGA-EW-A1IZ-01 6 151766618 151766618 T G RMND1 Missense_Mutation p.K110T 0.20 tolerated(0.09) benign(0.004) TCGA-EW-A1IZ-01 6 151785624 151785625 AA - C6orf211 Frame_Shift_Del p.K144Rfs*26 0.33 TCGA-EW-A1IZ-01 6 154360523 154360523 C T OPRM1 Intron 0.29 TCGA-EW-A1IZ-01 6 154412166 154412166 C T OPRM1 Silent p.F334F 0.16 TCGA-EW-A1IZ-01 6 161071369 161071369 C T LPA Splice_Site p.X70_splice 0.22 TCGA-EW-A1IZ-01 6 20152948 20152948 C T MBOAT1 Missense_Mutation p.R51H 0.14 deleterious(0) probably_damaging(0.999) TCGA-EW-A1IZ-01 6 26043595 26043595 C A HIST1H2BB Silent p.T97T 0.11 TCGA-EW-A1IZ-01 6 28227370 28227370 G A NKAPL Missense_Mutation p.R74Q 0.36 tolerated(0.19) unknown(0) TCGA-EW-A1IZ-01 6 28359098 28359098 T C ZSCAN12 Missense_Mutation p.I323M 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-EW-A1IZ-01 6 30711703 30711703 G T IER3 3'UTR 0.15 TCGA-EW-A1IZ-01 6 33243843 33243843 G T RPS18 Missense_Mutation p.Q97H 0.09 tolerated(0.48) benign(0.146) TCGA-EW-A1IZ-01 6 41557781 41557781 C - FOXP4 Frame_Shift_Del p.P412Rfs*77 0.33 TCGA-EW-A1IZ-01 6 42204015 42204015 C T TRERF1 Silent p.T998T 0.15 TCGA-EW-A1IZ-01 6 45399682 45399682 G A RUNX2 Missense_Mutation p.R169Q 0.13 deleterious(0) probably_damaging(0.922) TCGA-EW-A1IZ-01 6 4943948 4943948 C T CDYL Silent p.G430G 0.11 TCGA-EW-A1IZ-01 6 53010469 53010469 T G GCM1 5'UTR 0.12 TCGA-EW-A1IZ-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.12 TCGA-EW-A1IZ-01 6 7575559 7575559 C T DSP Missense_Mutation p.S823L 0.18 benign(0.154) TCGA-EW-A1IZ-01 6 80656915 80656915 A G ELOVL4 Missense_Mutation p.W28R 0.24 deleterious(0.01) benign(0.379) TCGA-EW-A1IZ-01 6 87966306 87966306 C T ZNF292 Nonsense_Mutation p.Q987* 0.17 TCGA-EW-A1IZ-01 6 89793677 89793677 A - PNRC1 Frame_Shift_Del p.K251Sfs*14 0.20 TCGA-EW-A1IZ-01 6 90461233 90461233 C A MDN1 Missense_Mutation p.K1048N 0.27 benign(0.03) TCGA-EW-A1IZ-01 6 90573550 90573550 G A CASP8AP2 RNA 0.12 TCGA-EW-A1IZ-01 6 97001369 97001369 C T UFL1 Missense_Mutation p.T792M 0.23 deleterious(0.01) possibly_damaging(0.891) TCGA-EW-A1IZ-01 7 105733467 105733467 C T SYPL1 Silent p.P191P 0.17 TCGA-EW-A1IZ-01 7 11464340 11464340 C T THSD7A Silent p.V1122V 0.19 TCGA-EW-A1IZ-01 7 120971879 120971879 G - WNT16 Frame_Shift_Del p.G167Afs*17 0.38 TCGA-EW-A1IZ-01 7 128478072 128478072 G A FLNC Missense_Mutation p.R334H 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-EW-A1IZ-01 7 14758165 14758165 A G DGKB Splice_Site p.X156_splice 0.16 TCGA-EW-A1IZ-01 7 148525902 148525902 G A EZH2 Silent p.D185D 0.21 TCGA-EW-A1IZ-01 7 149172326 149172326 C T ZNF746 Missense_Mutation p.V363M 0.20 tolerated(0.18) benign(0.334) TCGA-EW-A1IZ-01 7 150654410 150654410 C T KCNH2 Missense_Mutation p.R366Q 0.22 deleterious(0.04) probably_damaging(0.973) TCGA-EW-A1IZ-01 7 150915925 150915925 T C ABCF2 Missense_Mutation p.K351R 0.25 tolerated(0.05) benign(0.317) TCGA-EW-A1IZ-01 7 155567691 155567691 A G RBM33 Missense_Mutation p.M1157V 0.12 deleterious(0) unknown(0) TCGA-EW-A1IZ-01 7 21943856 21943856 G A CDCA7L Nonsense_Mutation p.R357* 0.12 TCGA-EW-A1IZ-01 7 26225088 26225088 T C NFE2L3 Silent p.V590V 0.12 TCGA-EW-A1IZ-01 7 28610052 28610052 C T CREB5 Missense_Mutation p.R121W 0.10 tolerated(0.13) probably_damaging(0.965) TCGA-EW-A1IZ-01 7 32526764 32526764 C T LSM5 3'UTR 0.32 TCGA-EW-A1IZ-01 7 6730908 6730908 T C ZNF12 Silent p.G555G 0.16 TCGA-EW-A1IZ-01 7 72081768 72081768 G T TYW1B Silent p.P184P 0.12 TCGA-EW-A1IZ-01 7 72951566 72951566 G A BCL7B 3'UTR 0.18 TCGA-EW-A1IZ-01 7 75044405 75044405 G A POM121C 3'Flank 0.16 TCGA-EW-A1IZ-01 7 76826170 76826170 C - FGL2 Frame_Shift_Del p.G249Efs*44 0.43 TCGA-EW-A1IZ-01 7 76984734 76984734 C T GSAP Missense_Mutation p.M378I 0.17 tolerated(0.21) benign(0.004) TCGA-EW-A1IZ-01 7 81339534 81339534 C T HGF Silent p.T490T 0.20 TCGA-EW-A1IZ-01 7 819661 819661 C G HEATR2 Missense_Mutation p.L771V 0.12 deleterious(0.01) probably_damaging(0.932) TCGA-EW-A1IZ-01 7 82763887 82763887 A C PCLO Missense_Mutation p.S993R 0.14 unknown(0) TCGA-EW-A1IZ-01 7 97616394 97616394 G A OCM2 Missense_Mutation p.A90V 0.14 deleterious(0.02) benign(0.322) TCGA-EW-A1IZ-01 7 97939890 97939890 G A BAIAP2L1 Silent p.Y274Y 0.18 TCGA-EW-A1IZ-01 7 98574180 98574180 G A TRRAP Silent p.A2671A 0.17 TCGA-EW-A1IZ-01 8 103572819 103572819 C T ODF1 Missense_Mutation p.R154W 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-EW-A1IZ-01 8 105367367 105367367 A G DCSTAMP Missense_Mutation p.Q431R 0.20 tolerated(0.65) benign(0.003) TCGA-EW-A1IZ-01 8 10755666 10755666 C A XKR6 Missense_Mutation p.L574F 0.20 tolerated(0.64) benign(0.041) TCGA-EW-A1IZ-01 8 110424608 110424608 C T PKHD1L1 Missense_Mutation p.P734S 0.17 tolerated(0.17) benign(0.114) TCGA-EW-A1IZ-01 8 11831477 11831477 G A DEFB136 Missense_Mutation p.P69L 0.15 tolerated(0.4) probably_damaging(0.988) TCGA-EW-A1IZ-01 8 124267675 124267675 A G ZHX1 Missense_Mutation p.V171A 0.12 tolerated(0.85) benign(0) TCGA-EW-A1IZ-01 8 12943263 12943263 G A DLC1 3'UTR 0.13 TCGA-EW-A1IZ-01 8 134477024 134477024 G A ST3GAL1 Missense_Mutation p.S227F 0.19 benign(0.187) TCGA-EW-A1IZ-01 8 139263192 139263192 C T FAM135B Missense_Mutation p.R145Q 0.14 tolerated(0.22) benign(0.059) TCGA-EW-A1IZ-01 8 144332457 144332457 C T ZFP41 Silent p.C148C 0.16 TCGA-EW-A1IZ-01 8 144406751 144406751 C T TOP1MT Silent p.V240V 0.32 TCGA-EW-A1IZ-01 8 145830970 145830970 C T ARHGAP39 Silent p.R10R 0.19 TCGA-EW-A1IZ-01 8 23198633 23198633 G A LOXL2 Silent p.Y205Y 0.15 TCGA-EW-A1IZ-01 8 25240190 25240190 A - DOCK5 Frame_Shift_Del p.R1345Gfs*12 0.24 TCGA-EW-A1IZ-01 8 27637736 27637736 A - ESCO2 Frame_Shift_Del p.N304Mfs*37 0.36 TCGA-EW-A1IZ-01 8 36663820 36663820 C T KCNU1 Silent p.L168L 0.08 TCGA-EW-A1IZ-01 8 53568876 53568877 - T RB1CC1 Frame_Shift_Ins p.N1171Kfs*8 0.19 TCGA-EW-A1IZ-01 8 71126143 71126143 T A NCOA2 Missense_Mutation p.E85V 0.15 deleterious(0) probably_damaging(0.973) TCGA-EW-A1IZ-01 8 74893422 74893422 A G TMEM70 Missense_Mutation p.I117V 0.08 tolerated(0.19) benign(0.032) TCGA-EW-A1IZ-01 8 87683247 87683247 G A CNGB3 Missense_Mutation p.R140C 0.14 deleterious(0.02) benign(0.097) TCGA-EW-A1IZ-01 8 94797606 94797606 G T TMEM67 Missense_Mutation p.D430Y 0.08 deleterious(0.03) probably_damaging(0.949) TCGA-EW-A1IZ-01 9 100092622 100092622 C A CCDC180 Missense_Mutation p.S660Y 0.08 tolerated(0.41) benign(0.013) TCGA-EW-A1IZ-01 9 123220813 123220813 C T CDK5RAP2 Missense_Mutation p.A764T 0.16 tolerated(0.62) benign(0) TCGA-EW-A1IZ-01 9 130485513 130485513 C T TTC16 Missense_Mutation p.A258V 0.35 deleterious(0) probably_damaging(1) TCGA-EW-A1IZ-01 9 131721164 131721164 C - NUP188 Frame_Shift_Del p.Y154Ifs*16 0.25 TCGA-EW-A1IZ-01 9 139840387 139840387 G T C8G Silent p.G94G 0.27 TCGA-EW-A1IZ-01 9 140361796 140361796 C T PNPLA7 Missense_Mutation p.M1004I 0.15 tolerated(0.58) benign(0.012) TCGA-EW-A1IZ-01 9 16436558 16436558 G - BNC2 Frame_Shift_Del p.P545Lfs*2 0.59 TCGA-EW-A1IZ-01 9 33294960 33294960 T C NFX1 Missense_Mutation p.C190R 0.25 tolerated_low_confidence(0.35) benign(0.036) TCGA-EW-A1IZ-01 9 34402458 34402458 C T FAM219A Missense_Mutation p.V91I 0.28 tolerated(0.31) benign(0.012) TCGA-EW-A1IZ-01 9 35650900 35650900 G A SIT1 5'UTR 0.20 TCGA-EW-A1IZ-01 9 71144508 71144508 T C PGM5 Missense_Mutation p.I547T 0.27 deleterious(0.04) probably_damaging(0.992) TCGA-EW-A1IZ-01 9 75445589 75445589 G A TMC1 Missense_Mutation p.A751T 0.10 tolerated(0.19) unknown(0) TCGA-EW-A1IZ-01 9 91994160 91994160 G - SEMA4D Frame_Shift_Del p.P683Qfs*83 0.63 TCGA-EW-A1IZ-01 9 94991394 94991394 G A IARS Silent p.L1100L 0.13 TCGA-EW-A1IZ-01 9 97873907 97873907 A G FANCC Silent p.G389G 0.20 TCGA-EW-A1IZ-01 9 98703810 98703810 A G ERCC6L2 Missense_Mutation p.N620S 0.15 tolerated(0.09) benign(0.21) TCGA-EW-A1IZ-01 9 99797876 99797876 C T CTSV Missense_Mutation p.A241T 0.22 deleterious(0.01) probably_damaging(0.933) TCGA-EW-A1IZ-01 X 108780219 108780219 C T NXT2 Missense_Mutation p.T50I 0.15 deleterious_low_confidence(0.04) benign(0.01) TCGA-EW-A1IZ-01 X 112059023 112059024 - C AMOT Frame_Shift_Ins p.S319Vfs*12 0.28 TCGA-EW-A1IZ-01 X 114425534 114425534 T C RBMXL3 Silent p.Y510Y 0.28 TCGA-EW-A1IZ-01 X 134166467 134166467 T C FAM127A Silent p.P18P 0.33 TCGA-EW-A1IZ-01 X 134166518 134166518 C A FAM127A Silent p.G35G 0.22 TCGA-EW-A1IZ-01 X 135441601 135441601 A G GPR112 Silent p.A2377A 0.19 TCGA-EW-A1IZ-01 X 13835019 13835019 T C GPM6B Missense_Mutation p.K2R 0.13 deleterious_low_confidence(0.03) benign(0.029) TCGA-EW-A1IZ-01 X 148690503 148690503 A G TMEM185A Silent p.C78C 0.10 TCGA-EW-A1IZ-01 X 148798463 148798463 G A MAGEA11 3'UTR 0.17 TCGA-EW-A1IZ-01 X 154007615 154007615 T C MPP1 Missense_Mutation p.Q413R 0.18 tolerated(0.31) benign(0.056) TCGA-EW-A1IZ-01 X 20213261 20213261 G A RPS6KA3 Nonsense_Mutation p.R110* 0.16 TCGA-EW-A1IZ-01 X 47918941 47918941 C T ZNF630 Missense_Mutation p.R297K 0.20 tolerated(0.32) benign(0.09) TCGA-EW-A1IZ-01 X 48047129 48047129 G A SSX5 Missense_Mutation p.R210C 0.06 deleterious(0.03) benign(0.056) TCGA-EW-A1IZ-01 X 48398283 48398283 G A TBC1D25 Missense_Mutation p.R33Q 0.20 tolerated(0.09) unknown(0) TCGA-EW-A1IZ-01 X 54112279 54112279 G A FAM120C Missense_Mutation p.P903L 0.35 tolerated(0.45) benign(0.007) TCGA-EW-A1IZ-01 X 55029489 55029489 C T APEX2 Missense_Mutation p.R173C 0.22 deleterious(0) benign(0.094) TCGA-EW-A1IZ-01 X 67273542 67273542 G T OPHN1 Missense_Mutation p.P757T 0.20 tolerated_low_confidence(0.9) benign(0.016) TCGA-EW-A1IZ-01 X 67942003 67942003 G T STARD8 Missense_Mutation p.Q858H 0.13 deleterious(0) possibly_damaging(0.583) TCGA-EW-A1IZ-01 X 70357623 70357623 C T MED12 Silent p.G1958G 0.17 TCGA-EW-A1IZ-01 X 71350651 71350651 C T RGAG4 Missense_Mutation p.G247D 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1IZ-01 X 71521829 71521829 G A CITED1 Missense_Mutation p.A135V 0.08 tolerated(0.48) benign(0.006) TCGA-EW-A1IZ-01 X 86069720 86069720 A - DACH2 Frame_Shift_Del p.T525Pfs*33 0.29 TCGA-EW-A1J1-01 11 64535092 64535092 C T SF1 Silent p.P556P 0.12 TCGA-EW-A1J1-01 11 64645813 64645813 A C EHD1 Missense_Mutation p.F42V 0.17 deleterious(0) benign(0.424) TCGA-EW-A1J1-01 12 100452034 100452034 T A UHRF1BP1L Silent p.S1007S 0.18 TCGA-EW-A1J1-01 12 110780236 110780236 C T ATP2A2 Silent p.N767N 0.42 TCGA-EW-A1J1-01 15 33954810 33954810 G A RYR3 Silent p.T1693T 0.45 TCGA-EW-A1J1-01 16 11071088 11071088 G T CLEC16A Silent p.R245R 0.45 TCGA-EW-A1J1-01 16 1398120 1398120 G A BAIAP3 Missense_Mutation p.R1093H 0.56 deleterious(0) probably_damaging(0.995) TCGA-EW-A1J1-01 17 12639654 12639654 G T MYOCD Splice_Site p.X197_splice 0.12 TCGA-EW-A1J1-01 17 16029431 16029435 TTTCT - NCOR1 Frame_Shift_Del p.K532Rfs*2 0.77 TCGA-EW-A1J1-01 18 43484051 43484051 C T EPG5 Missense_Mutation p.R1454H 0.25 tolerated(0.07) probably_damaging(0.984) TCGA-EW-A1J1-01 1 168683522 168683522 A T DPT Missense_Mutation p.V123E 0.16 tolerated(0.78) possibly_damaging(0.782) TCGA-EW-A1J1-01 1 201757631 201757631 C T NAV1 Missense_Mutation p.R1011C 0.19 deleterious(0) probably_damaging(1) TCGA-EW-A1J1-01 22 37770887 37770887 G A ELFN2 Missense_Mutation p.R230W 0.25 tolerated(0.14) possibly_damaging(0.889) TCGA-EW-A1J1-01 2 210681761 210681761 G A UNC80 Silent p.T488T 0.26 TCGA-EW-A1J1-01 2 28796125 28796125 C A PLB1 Silent p.T462T 0.52 TCGA-EW-A1J1-01 2 39239446 39239446 G A SOS1 Silent p.I737I 0.16 TCGA-EW-A1J1-01 3 178952075 178952075 A T PIK3CA Missense_Mutation p.N1044Y 0.32 tolerated(0.5) benign(0.068) TCGA-EW-A1J1-01 5 156899736 156899736 C T NIPAL4 Missense_Mutation p.T390I 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-EW-A1J1-01 5 170883561 170883561 G C FGF18 Missense_Mutation p.E126Q 0.15 deleterious(0.01) probably_damaging(0.91) TCGA-EW-A1J1-01 5 56177010 56177011 - ATAG MAP3K1 Frame_Shift_Ins p.L764* 0.58 TCGA-EW-A1J1-01 6 24528350 24528350 G C ALDH5A1 Silent p.L446L 0.31 TCGA-EW-A1J1-01 6 41250151 41250151 G T TREM1 Missense_Mutation p.R130S 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-EW-A1J1-01 X 153706245 153706245 C T LAGE3 3'UTR 0.34 TCGA-EW-A1J1-01 X 24722586 24722586 G T POLA1 Nonsense_Mutation p.G110* 0.21 TCGA-EW-A1J1-01 X 83723776 83723776 G T HDX Missense_Mutation p.Q319K 0.43 deleterious(0.01) probably_damaging(0.965) TCGA-EW-A1J3-01 10 61552827 61552827 G A CCDC6 Missense_Mutation p.R425W 0.36 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EW-A1J3-01 13 103490993 103490993 A G BIVM-ERCC5 Silent p.K346K 0.39 TCGA-EW-A1J3-01 16 13010598 13010598 A G SHISA9 Missense_Mutation p.E206G 0.13 tolerated(0.14) probably_damaging(0.975) TCGA-EW-A1J3-01 17 28378166 28378166 G C EFCAB5 Missense_Mutation p.A411P 0.61 deleterious(0.01) probably_damaging(0.961) TCGA-EW-A1J3-01 17 38031506 38031506 G A ZPBP2 Splice_Site p.X237_splice 0.17 TCGA-EW-A1J3-01 17 38189359 38189359 C T MED24 Missense_Mutation p.G258S 0.15 tolerated(0.61) benign(0.043) TCGA-EW-A1J3-01 17 38189431 38189431 C G MED24 Missense_Mutation p.E234Q 0.13 tolerated(0.08) benign(0.376) TCGA-EW-A1J3-01 17 38189690 38189690 C G MED24 Missense_Mutation p.E193D 0.14 tolerated(0.34) probably_damaging(0.993) TCGA-EW-A1J3-01 17 38905578 38905578 C T KRT25 Splice_Site p.X392_splice 0.06 TCGA-EW-A1J3-01 17 79632157 79632157 A C OXLD1 3'UTR 0.40 TCGA-EW-A1J3-01 19 6850694 6850694 G A VAV1 Missense_Mutation p.V715I 0.43 tolerated(0.12) benign(0.029) TCGA-EW-A1J3-01 19 9038120 9038120 T A MUC16 Silent p.T12052T 0.36 TCGA-EW-A1J3-01 1 156639358 156639358 T C NES Missense_Mutation p.N1541S 0.18 tolerated(1) benign(0.002) TCGA-EW-A1J3-01 1 70385302 70385302 G A LRRC7 Intron 0.28 TCGA-EW-A1J3-01 20 3835301 3835301 G A MAVS Silent p.K10K 0.28 TCGA-EW-A1J3-01 21 19642342 19642342 C T TMPRSS15 Missense_Mutation p.G1002R 0.04 deleterious(0) probably_damaging(1) TCGA-EW-A1J3-01 22 25158416 25158416 C T PIWIL3 Silent p.E17E 0.33 TCGA-EW-A1J3-01 2 119750834 119750834 C A MARCO Missense_Mutation p.L463M 0.39 tolerated(0.06) unknown(0) TCGA-EW-A1J3-01 2 162087536 162087536 C T TANK Missense_Mutation p.A192V 0.33 tolerated(0.27) benign(0.007) TCGA-EW-A1J3-01 2 228884249 228884249 A C SPHKAP Missense_Mutation p.S441A 0.26 tolerated(0.52) benign(0.002) TCGA-EW-A1J3-01 2 26697524 26697524 C T OTOF Missense_Mutation p.G1049S 0.31 deleterious(0) probably_damaging(1) TCGA-EW-A1J3-01 4 146038513 146038513 A G ABCE1 Missense_Mutation p.Y290C 0.35 deleterious(0) probably_damaging(1) TCGA-EW-A1J3-01 4 99355161 99355161 A G RAP1GDS1 Missense_Mutation p.I506M 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-EW-A1J3-01 5 1216682 1216682 C T SLC6A19 Silent p.C299C 0.28 TCGA-EW-A1J3-01 5 180056385 180056385 T C FLT4 Missense_Mutation p.T287A 0.22 tolerated(0.44) benign(0.314) TCGA-EW-A1J3-01 5 32364331 32364331 C T ZFR Silent p.Q962Q 0.59 TCGA-EW-A1J3-01 6 106536124 106536124 G A PRDM1 Missense_Mutation p.E31K 0.38 tolerated_low_confidence(0.16) benign(0.001) TCGA-EW-A1J3-01 6 3019762 3019762 G C NQO2 Missense_Mutation p.S190T 0.31 tolerated(0.58) benign(0.003) TCGA-EW-A1J3-01 8 100789055 100789055 A G VPS13B Missense_Mutation p.T2459A 0.29 tolerated(0.07) possibly_damaging(0.636) TCGA-EW-A1J3-01 9 133376556 133376556 C T ASS1 3'UTR 0.38 TCGA-EW-A1J5-01 10 108536409 108536409 C T SORCS1 Silent p.L256L 0.31 TCGA-EW-A1J5-01 10 118196375 118196375 C T PNLIPRP3 Nonsense_Mutation p.Q68* 0.21 TCGA-EW-A1J5-01 10 129866396 129866396 G A PTPRE Missense_Mutation p.D285N 0.36 tolerated(0.57) possibly_damaging(0.629) TCGA-EW-A1J5-01 10 129901071 129901071 C T MKI67 Silent p.R3011R 0.46 TCGA-EW-A1J5-01 10 135106636 135106636 C G TUBGCP2 Missense_Mutation p.E339Q 0.11 deleterious(0.05) probably_damaging(0.996) TCGA-EW-A1J5-01 10 23250863 23250863 C G ARMC3 Missense_Mutation p.I196M 0.29 deleterious(0.04) benign(0.1) TCGA-EW-A1J5-01 10 323392 323392 C G DIP2C Missense_Mutation p.G1515A 0.24 deleterious(0) probably_damaging(0.995) TCGA-EW-A1J5-01 10 35896648 35896648 C G GJD4 Missense_Mutation p.F69L 0.31 deleterious(0) probably_damaging(0.994) TCGA-EW-A1J5-01 10 50678569 50678569 C G ERCC6 Missense_Mutation p.S1146T 0.28 tolerated(0.28) benign(0.018) TCGA-EW-A1J5-01 10 65132739 65132739 G A JMJD1C Intron 0.23 TCGA-EW-A1J5-01 10 71255361 71255361 C A TSPAN15 Missense_Mutation p.F123L 0.35 tolerated(1) benign(0.003) TCGA-EW-A1J5-01 10 75559813 75559813 G A ZSWIM8 Silent p.V1570V 0.32 TCGA-EW-A1J5-01 10 97110968 97110968 C T SORBS1 Missense_Mutation p.E794K 0.29 deleterious(0.02) probably_damaging(0.968) TCGA-EW-A1J5-01 10 98108050 98108050 G A OPALIN Missense_Mutation p.S82F 0.30 deleterious_low_confidence(0.01) benign(0.008) TCGA-EW-A1J5-01 11 118179150 118179150 G A CD3E Missense_Mutation p.E27K 0.41 tolerated(0.33) benign(0.007) TCGA-EW-A1J5-01 11 12315771 12315771 C T MICALCL Missense_Mutation p.P265S 0.29 tolerated(0.08) benign(0.411) TCGA-EW-A1J5-01 11 123508916 123508916 C G SCN3B Missense_Mutation p.E188Q 0.45 deleterious(0.01) possibly_damaging(0.879) TCGA-EW-A1J5-01 11 134029897 134029897 C G NCAPD3 Missense_Mutation p.E1253Q 0.43 deleterious(0.05) possibly_damaging(0.889) TCGA-EW-A1J5-01 11 17522697 17522697 C G USH1C Missense_Mutation p.E761Q 0.24 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EW-A1J5-01 11 34501730 34501730 G T ELF5 3'UTR 0.42 TCGA-EW-A1J5-01 11 403681 403681 C T PKP3 Missense_Mutation p.R663C 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1J5-01 11 4471264 4471264 C T OR52K2 Missense_Mutation p.S232F 0.31 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 11 47289528 47289528 C T NR1H3 Silent p.L351L 0.34 TCGA-EW-A1J5-01 11 47447758 47447758 C T PSMC3 Missense_Mutation p.E25K 0.33 tolerated(0.12) benign(0.001) TCGA-EW-A1J5-01 11 55032373 55032373 C T TRIM48 Intron 0.32 TCGA-EW-A1J5-01 11 55340509 55340509 G C OR4C16 Missense_Mutation p.K302N 0.29 tolerated(0.18) possibly_damaging(0.883) TCGA-EW-A1J5-01 11 55703532 55703532 G A OR5I1 Silent p.F115F 0.34 TCGA-EW-A1J5-01 11 55761969 55761969 T C OR5F1 Missense_Mutation p.M45V 0.28 deleterious(0.01) benign(0.338) TCGA-EW-A1J5-01 11 56000014 56000014 G A OR5T2 Silent p.V216V 0.24 TCGA-EW-A1J5-01 11 56058539 56058539 G A OR8H1 5'UTR 0.07 TCGA-EW-A1J5-01 11 5718549 5718549 C T TRIM22 Silent p.I165I 0.19 TCGA-EW-A1J5-01 11 58877055 58877055 C T FAM111B 5'UTR 0.31 TCGA-EW-A1J5-01 11 58877106 58877106 C G FAM111B Missense_Mutation p.S3C 0.37 tolerated(0.12) possibly_damaging(0.57) TCGA-EW-A1J5-01 11 60637194 60637194 C G ZP1 Missense_Mutation p.S168C 0.20 deleterious(0.03) possibly_damaging(0.737) TCGA-EW-A1J5-01 11 61404878 61404878 G C RPLP0P2 RNA 0.33 TCGA-EW-A1J5-01 11 63742177 63742177 C T AP000721.4 Silent p.L9L 0.62 TCGA-EW-A1J5-01 11 66050245 66050245 G A CNIH2 Silent p.L64L 0.17 TCGA-EW-A1J5-01 11 66188755 66188755 C T NPAS4 Silent p.V35V 0.29 TCGA-EW-A1J5-01 11 66192503 66192503 C T NPAS4 Silent p.F714F 0.27 TCGA-EW-A1J5-01 11 66203553 66203553 C T MRPL11 Silent p.Q168Q 0.28 TCGA-EW-A1J5-01 11 66460511 66460511 C T SPTBN2 Missense_Mutation p.D1639N 0.25 tolerated(0.34) possibly_damaging(0.827) TCGA-EW-A1J5-01 11 66627563 66627563 G A LRFN4 Missense_Mutation p.G602E 0.23 tolerated_low_confidence(0.52) benign(0.127) TCGA-EW-A1J5-01 11 68181258 68181258 G A LRP5 Missense_Mutation p.E869K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-EW-A1J5-01 11 68835012 68835012 G A TPCN2 Silent p.Q256Q 0.10 TCGA-EW-A1J5-01 11 85445351 85445351 C T SYTL2 Missense_Mutation p.E340K 0.57 tolerated(0.21) benign(0.011) TCGA-EW-A1J5-01 12 10066206 10066206 C G CLEC2A Missense_Mutation p.D162H 0.31 deleterious(0.03) benign(0.168) TCGA-EW-A1J5-01 12 104146997 104146997 G C STAB2 Splice_Site p.X2194_splice 0.28 TCGA-EW-A1J5-01 12 109673117 109673117 G C ACACB Splice_Site p.X1450_splice 0.35 TCGA-EW-A1J5-01 12 109725248 109725248 G C FOXN4 Missense_Mutation p.Q184E 0.45 deleterious(0.04) benign(0.184) TCGA-EW-A1J5-01 12 109958979 109958979 C G UBE3B Silent p.L701L 0.40 TCGA-EW-A1J5-01 12 112140073 112140073 G C ACAD10 Missense_Mutation p.E99Q 0.04 tolerated(0.07) probably_damaging(0.99) TCGA-EW-A1J5-01 12 113285625 113285625 G A RPH3A Missense_Mutation p.E70K 0.30 tolerated(0.7) benign(0.403) TCGA-EW-A1J5-01 12 119960749 119960749 G A CCDC60 Missense_Mutation p.R349K 0.29 tolerated(0.51) benign(0.019) TCGA-EW-A1J5-01 12 121693401 121693401 C T CAMKK2 Missense_Mutation p.D287N 0.36 tolerated(0.1) benign(0.243) TCGA-EW-A1J5-01 12 123983136 123983136 C G RILPL1 Missense_Mutation p.E252D 0.34 tolerated(0.19) benign(0.013) TCGA-EW-A1J5-01 12 124158159 124158159 C T TCTN2 Intron 0.27 TCGA-EW-A1J5-01 12 124397850 124397850 C T DNAH10 Missense_Mutation p.S3329L 0.38 probably_damaging(0.998) TCGA-EW-A1J5-01 12 124408387 124408387 C G DNAH10 Missense_Mutation p.Q3744E 0.26 benign(0.017) TCGA-EW-A1J5-01 12 132237743 132237743 G A SFSWAP Missense_Mutation p.G386E 0.26 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 12 2910381 2910381 G A FKBP4 Silent p.Q377Q 0.32 TCGA-EW-A1J5-01 12 32895575 32895575 C T DNM1L Nonsense_Mutation p.Q683* 0.37 TCGA-EW-A1J5-01 12 40681261 40681261 C G LRRK2 Missense_Mutation p.S870C 0.31 deleterious(0) benign(0.015) TCGA-EW-A1J5-01 12 51868281 51868281 G T SLC4A8 Intron 0.32 TCGA-EW-A1J5-01 12 54778269 54778269 G A ZNF385A Silent p.I30I 0.38 TCGA-EW-A1J5-01 12 58088532 58088532 G A OS9 Splice_Site p.X55_splice 0.30 TCGA-EW-A1J5-01 12 6092323 6092323 G A VWF Silent p.F2358F 0.24 TCGA-EW-A1J5-01 12 69094517 69094517 G A NUP107 Silent p.L188L 0.35 TCGA-EW-A1J5-01 12 7046168 7046168 C G ATN1 Missense_Mutation p.Q580E 0.26 possibly_damaging(0.848) TCGA-EW-A1J5-01 12 93149662 93149662 G C PLEKHG7 Missense_Mutation p.E184D 0.18 tolerated(0.17) benign(0.009) TCGA-EW-A1J5-01 13 103299562 103299562 G A TPP2 Silent p.K832K 0.29 TCGA-EW-A1J5-01 13 113748898 113748898 G C MCF2L Missense_Mutation p.Q1008H 0.30 tolerated(0.53) possibly_damaging(0.477) TCGA-EW-A1J5-01 13 114188406 114188406 C G TMCO3 Missense_Mutation p.L464V 0.20 tolerated(0.08) possibly_damaging(0.627) TCGA-EW-A1J5-01 13 114309253 114309253 C G ATP4B Missense_Mutation p.W39C 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-EW-A1J5-01 13 114312444 114312444 C G ATP4B Missense_Mutation p.E6Q 0.30 tolerated(0.09) probably_damaging(1) TCGA-EW-A1J5-01 13 25901082 25901082 G C NUPL1 Missense_Mutation p.E354Q 0.35 tolerated(0.05) benign(0.186) TCGA-EW-A1J5-01 13 26788189 26788189 C T RNF6 Silent p.Q610Q 0.36 TCGA-EW-A1J5-01 13 33281154 33281154 G A PDS5B Missense_Mutation p.R647K 0.19 tolerated(0.22) benign(0.025) TCGA-EW-A1J5-01 13 36050059 36050059 C T MAB21L1 Missense_Mutation p.E73K 0.40 deleterious(0.01) possibly_damaging(0.655) TCGA-EW-A1J5-01 13 36805331 36805331 C G CCDC169 Intron 0.30 TCGA-EW-A1J5-01 13 37584769 37584769 C T SUPT20H Missense_Mutation p.E708K 0.35 tolerated(0.14) benign(0.038) TCGA-EW-A1J5-01 13 50108389 50108389 C G RCBTB1 Missense_Mutation p.E489Q 0.21 deleterious(0.01) possibly_damaging(0.821) TCGA-EW-A1J5-01 13 99020373 99020373 C G FARP1 Missense_Mutation p.P108A 0.05 deleterious(0.01) possibly_damaging(0.853) TCGA-EW-A1J5-01 14 103466003 103466003 G A CDC42BPB Silent p.L165L 0.19 TCGA-EW-A1J5-01 14 105406830 105406830 G C AHNAK2 Silent p.L4986L 0.27 TCGA-EW-A1J5-01 14 105413693 105413693 G C AHNAK2 Missense_Mutation p.Q2699E 0.29 benign(0.024) TCGA-EW-A1J5-01 14 23858138 23858138 C T MYH6 Missense_Mutation p.E1369K 0.41 deleterious(0.01) probably_damaging(0.928) TCGA-EW-A1J5-01 14 23867983 23867983 G C MYH6 Silent p.L615L 0.32 TCGA-EW-A1J5-01 14 25042775 25042775 C T CTSG 3'UTR 0.22 TCGA-EW-A1J5-01 14 38061312 38061312 T C FOXA1 Missense_Mutation p.D226G 0.30 deleterious(0) probably_damaging(0.998) TCGA-EW-A1J5-01 14 55848870 55848870 C T ATG14 Missense_Mutation p.M229I 0.23 tolerated(0.3) benign(0.022) TCGA-EW-A1J5-01 14 58895061 58895061 C G KIAA0586 Missense_Mutation p.Q39E 0.31 deleterious(0) benign(0.125) TCGA-EW-A1J5-01 14 60750229 60750229 G A PPM1A Missense_Mutation p.E343K 0.35 tolerated(0.09) possibly_damaging(0.65) TCGA-EW-A1J5-01 14 64691728 64691728 G A SYNE2 Silent p.V6827V 0.27 TCGA-EW-A1J5-01 14 64692244 64692244 G C SYNE2 Nonstop_Mutation p.*6908Yext*3 0.28 TCGA-EW-A1J5-01 14 71540426 71540426 C T PCNX Silent p.L1673L 0.33 TCGA-EW-A1J5-01 14 72139289 72139289 C A SIPA1L1 Silent p.V1018V 0.41 TCGA-EW-A1J5-01 14 76429531 76429531 C G TGFB3 Intron 0.33 TCGA-EW-A1J5-01 14 91757388 91757388 C T CCDC88C Missense_Mutation p.E1385K 0.28 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 14 94395359 94395359 G T FAM181A Missense_Mutation p.R305M 0.43 deleterious(0) possibly_damaging(0.601) TCGA-EW-A1J5-01 15 101569415 101569415 G T LRRK1 Missense_Mutation p.A981S 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-EW-A1J5-01 15 101595248 101595248 C T LRRK1 Silent p.F1384F 0.34 TCGA-EW-A1J5-01 15 20649492 20649492 C T HERC2P3 RNA 0.13 TCGA-EW-A1J5-01 15 27185157 27185157 G A GABRA5 Missense_Mutation p.M270I 0.37 deleterious(0) benign(0.438) TCGA-EW-A1J5-01 15 28369301 28369301 G C HERC2 Missense_Mutation p.S4357C 0.39 probably_damaging(0.989) TCGA-EW-A1J5-01 15 28391398 28391398 C T HERC2 Missense_Mutation p.V3665I 0.20 benign(0.339) TCGA-EW-A1J5-01 15 29346361 29346361 G A APBA2 Missense_Mutation p.E92K 0.45 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-EW-A1J5-01 15 34014980 34014980 C T RYR3 Silent p.F2228F 0.32 TCGA-EW-A1J5-01 15 41105568 41105568 G A ZFYVE19 Missense_Mutation p.D355N 0.25 tolerated(0.1) benign(0.167) TCGA-EW-A1J5-01 15 42041852 42041852 C T MGA Missense_Mutation p.T2016I 0.26 deleterious_low_confidence(0.02) benign(0.027) TCGA-EW-A1J5-01 15 42129134 42129134 C T JMJD7 Silent p.I286I 0.29 TCGA-EW-A1J5-01 15 43281144 43281144 G C UBR1 Missense_Mutation p.I1290M 0.27 tolerated(0.09) possibly_damaging(0.59) TCGA-EW-A1J5-01 15 43939258 43939258 C T CATSPER2 Missense_Mutation p.M126I 0.27 deleterious(0) benign(0.342) TCGA-EW-A1J5-01 15 45389584 45389584 G A DUOX2 Silent p.I1233I 0.22 TCGA-EW-A1J5-01 15 48443700 48443700 G A MYEF2 Nonsense_Mutation p.Q426* 0.23 TCGA-EW-A1J5-01 15 56736827 56736827 C T MNS1 Silent p.K167K 0.03 TCGA-EW-A1J5-01 15 56757181 56757181 G T MNS1 5'UTR 0.33 TCGA-EW-A1J5-01 15 62238536 62238536 C T VPS13C Missense_Mutation p.M1650I 0.38 tolerated(0.07) benign(0.001) TCGA-EW-A1J5-01 15 63947976 63947976 C G HERC1 Missense_Mutation p.R3350T 0.26 benign(0.357) TCGA-EW-A1J5-01 15 77067266 77067266 G A SCAPER Missense_Mutation p.S322F 0.38 tolerated(0.07) benign(0.251) TCGA-EW-A1J5-01 15 81436030 81436030 C G C15orf26 Missense_Mutation p.L169V 0.28 deleterious(0.01) possibly_damaging(0.757) TCGA-EW-A1J5-01 16 11861345 11861345 C T ZC3H7A Missense_Mutation p.D484N 0.25 tolerated(0.12) probably_damaging(0.994) TCGA-EW-A1J5-01 16 13002435 13002435 C G SHISA9 Intron 0.35 TCGA-EW-A1J5-01 16 14966096 14966096 C A NOMO1 Nonsense_Mutation p.S655* 0.33 TCGA-EW-A1J5-01 16 18903670 18903670 G A SMG1 Missense_Mutation p.S140L 0.22 tolerated(0.17) benign(0.009) TCGA-EW-A1J5-01 16 28112956 28112956 G A XPO6 Silent p.V1033V 0.34 TCGA-EW-A1J5-01 16 309544 309544 C G ITFG3 Missense_Mutation p.L111V 0.20 tolerated(0.22) probably_damaging(0.999) TCGA-EW-A1J5-01 16 30996886 30996886 C A AC135048.1 Silent p.T216T 0.27 TCGA-EW-A1J5-01 16 48162479 48162479 G A ABCC12 Missense_Mutation p.S469L 0.10 tolerated(0.39) benign(0.001) TCGA-EW-A1J5-01 16 49315146 49315146 C T CBLN1 Missense_Mutation p.M77I 0.07 tolerated(0.05) possibly_damaging(0.823) TCGA-EW-A1J5-01 16 67578631 67578631 G A FAM65A Missense_Mutation p.E943K 0.44 deleterious(0) benign(0.292) TCGA-EW-A1J5-01 16 67578880 67578880 G A FAM65A Missense_Mutation p.R984Q 0.61 tolerated(0.21) benign(0.238) TCGA-EW-A1J5-01 16 68849593 68849594 - G CDH1 Frame_Shift_Ins p.F499Lfs*38 0.35 TCGA-EW-A1J5-01 16 77327078 77327078 C T ADAMTS18 Silent p.E1028E 0.53 TCGA-EW-A1J5-01 17 16062146 16062146 C T NCOR1 Silent p.E220E 0.53 TCGA-EW-A1J5-01 17 16284371 16284371 C T UBB 5'UTR 0.31 TCGA-EW-A1J5-01 17 17171210 17171210 C G COPS3 Missense_Mutation p.D144H 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-EW-A1J5-01 17 19215401 19215401 C T EPN2 Nonsense_Mutation p.Q306* 0.44 TCGA-EW-A1J5-01 17 35827573 35827573 G A TADA2A Missense_Mutation p.R280Q 0.21 deleterious(0.04) benign(0.026) TCGA-EW-A1J5-01 17 36955585 36955585 C T PIP4K2B Silent p.Q31Q 0.21 TCGA-EW-A1J5-01 17 37809924 37809924 C T STARD3 Missense_Mutation p.S47F 0.43 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 17 37898674 37898674 G C GRB7 Missense_Mutation p.K63N 0.62 deleterious(0.04) benign(0.015) TCGA-EW-A1J5-01 17 39383235 39383235 C G KRTAP9-2 Missense_Mutation p.S110C 0.45 tolerated(1) unknown(0) TCGA-EW-A1J5-01 17 39684181 39684181 C A KRT19 Nonsense_Mutation p.E107* 0.25 TCGA-EW-A1J5-01 17 40447795 40447795 G C STAT5A Missense_Mutation p.E178D 0.21 tolerated(0.15) benign(0.006) TCGA-EW-A1J5-01 17 42988702 42988702 G A GFAP Silent p.A343A 0.21 TCGA-EW-A1J5-01 17 4872102 4872102 C T CAMTA2 Missense_Mutation p.E1209K 0.31 tolerated_low_confidence(0.06) benign(0.001) TCGA-EW-A1J5-01 17 56247698 56247698 C T OR4D2 Missense_Mutation p.H228Y 0.23 tolerated(0.05) benign(0.068) TCGA-EW-A1J5-01 17 61391897 61391897 G A TANC2 Silent p.V362V 0.06 TCGA-EW-A1J5-01 17 66924181 66924181 C G ABCA8 Missense_Mutation p.L383F 0.25 tolerated(0.17) possibly_damaging(0.878) TCGA-EW-A1J5-01 17 70119832 70119832 G A SOX9 Silent p.L278L 0.56 TCGA-EW-A1J5-01 17 73647280 73647280 G T RECQL5 Missense_Mutation p.F405L 0.18 deleterious(0.02) possibly_damaging(0.698) TCGA-EW-A1J5-01 17 73910890 73910890 C T FBF1 Missense_Mutation p.E903K 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-EW-A1J5-01 17 74013937 74013937 C T EVPL Missense_Mutation p.M531I 0.50 tolerated(0.15) benign(0.164) TCGA-EW-A1J5-01 17 74277977 74277977 G A QRICH2 Nonsense_Mutation p.R1245* 0.26 TCGA-EW-A1J5-01 17 77710899 77710899 G A ENPP7 Missense_Mutation p.M362I 0.52 deleterious(0) probably_damaging(0.995) TCGA-EW-A1J5-01 17 78110058 78110058 G A EIF4A3 Missense_Mutation p.L354F 0.15 deleterious(0) probably_damaging(0.995) TCGA-EW-A1J5-01 17 80915078 80915078 G A B3GNTL1 Silent p.F303F 0.19 TCGA-EW-A1J5-01 18 19029635 19029635 G C GREB1L Missense_Mutation p.D520H 0.25 tolerated(0.06) benign(0.14) TCGA-EW-A1J5-01 18 20573141 20573141 G A RBBP8 Missense_Mutation p.E451K 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-EW-A1J5-01 18 21404515 21404515 G A LAMA3 Missense_Mutation p.E853K 0.29 possibly_damaging(0.598) TCGA-EW-A1J5-01 18 31432896 31432896 C T NOL4 Silent p.V609V 0.06 TCGA-EW-A1J5-01 18 32825765 32825765 G A ZNF397 Missense_Mutation p.E366K 0.28 tolerated(0.12) probably_damaging(0.998) TCGA-EW-A1J5-01 18 34326920 34326920 C G FHOD3 Missense_Mutation p.Q1177E 0.42 tolerated(0.52) benign(0.033) TCGA-EW-A1J5-01 18 44561317 44561317 C T TCEB3B Missense_Mutation p.E107K 0.07 deleterious(0) possibly_damaging(0.874) TCGA-EW-A1J5-01 18 5969468 5969468 C T L3MBTL4 Missense_Mutation p.R522K 0.32 tolerated(0.05) benign(0.388) TCGA-EW-A1J5-01 18 59895760 59895760 G A KIAA1468 Silent p.R459R 0.30 TCGA-EW-A1J5-01 18 61387387 61387387 G A SERPINB11 Missense_Mutation p.E206K 0.46 tolerated(1) benign(0.03) TCGA-EW-A1J5-01 18 74696844 74696844 C T RP11-862L9.3 3'Flank 0.27 TCGA-EW-A1J5-01 18 8244068 8244068 G A PTPRM Silent p.K771K 0.29 TCGA-EW-A1J5-01 19 10394426 10394426 G C ICAM1 Missense_Mutation p.E201Q 0.50 tolerated(1) benign(0.006) TCGA-EW-A1J5-01 19 10600510 10600510 C A KEAP1 Nonsense_Mutation p.E449* 0.13 TCGA-EW-A1J5-01 19 10945929 10945929 C T TMED1 Intron 0.62 TCGA-EW-A1J5-01 19 11361688 11361688 C G DOCK6 Silent p.L194L 0.44 TCGA-EW-A1J5-01 19 12243957 12243957 G A ZNF20 Silent p.F348F 0.34 TCGA-EW-A1J5-01 19 12244352 12244352 G C ZNF20 Missense_Mutation p.H217D 0.35 deleterious(0) probably_damaging(0.966) TCGA-EW-A1J5-01 19 12491439 12491439 C G CTD-3105H18.14 3'UTR 0.06 TCGA-EW-A1J5-01 19 1271007 1271007 C G CIRBP Silent p.V25V 0.21 TCGA-EW-A1J5-01 19 1367172 1367172 C T MUM1 Missense_Mutation p.L460F 0.32 tolerated(0.41) possibly_damaging(0.888) TCGA-EW-A1J5-01 19 1398963 1398963 C A GAMT Missense_Mutation p.W174C 0.19 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-EW-A1J5-01 19 16687047 16687047 C G MED26 Missense_Mutation p.V532L 0.44 tolerated(0.27) benign(0.001) TCGA-EW-A1J5-01 19 2426965 2426965 C A TIMM13 Missense_Mutation p.R90L 0.57 deleterious(0) benign(0.199) TCGA-EW-A1J5-01 19 2989254 2989254 G C TLE6 Missense_Mutation p.W312C 0.23 deleterious(0) probably_damaging(0.996) TCGA-EW-A1J5-01 19 36685937 36685937 G A ZNF565 Missense_Mutation p.S44L 0.30 deleterious(0.03) benign(0.21) TCGA-EW-A1J5-01 19 40367774 40367774 C T FCGBP Missense_Mutation p.V4396M 0.41 probably_damaging(0.934) TCGA-EW-A1J5-01 19 40433879 40433879 C T FCGBP Silent p.L130L 0.31 TCGA-EW-A1J5-01 19 45528975 45528975 C T RELB Missense_Mutation p.S289F 0.28 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 19 50303369 50303369 G A AP2A1 Missense_Mutation p.D473N 0.33 deleterious(0.02) probably_damaging(0.923) TCGA-EW-A1J5-01 19 51581409 51581409 G C KLK14 Missense_Mutation p.S220C 0.50 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 19 52660057 52660057 C G ZNF836 Silent p.R293R 0.29 TCGA-EW-A1J5-01 19 53643693 53643693 C T ZNF347 Silent p.G797G 0.26 TCGA-EW-A1J5-01 19 53912962 53912962 G A ZNF765 3'UTR 0.25 TCGA-EW-A1J5-01 19 54677852 54677852 G A MBOAT7 Silent p.F435F 0.17 TCGA-EW-A1J5-01 19 55502000 55502000 G C NLRP2 Missense_Mutation p.E890Q 0.26 deleterious(0.03) probably_damaging(0.96) TCGA-EW-A1J5-01 19 56189070 56189070 C G EPN1 Missense_Mutation p.L68V 0.29 deleterious_low_confidence(0) unknown(0) TCGA-EW-A1J5-01 19 58639869 58639869 G A ZNF329 Silent p.L334L 0.34 TCGA-EW-A1J5-01 19 6826674 6826674 C G VAV1 Missense_Mutation p.H293Q 0.36 tolerated(0.29) benign(0.401) TCGA-EW-A1J5-01 19 9057612 9057612 G A MUC16 Missense_Mutation p.S9945L 0.22 unknown(0) TCGA-EW-A1J5-01 19 9087590 9087590 C G MUC16 Missense_Mutation p.E1409Q 0.24 unknown(0) TCGA-EW-A1J5-01 1 109812082 109812082 G T CELSR2 Silent p.V2283V 0.75 TCGA-EW-A1J5-01 1 109813147 109813147 G T CELSR2 Nonsense_Mutation p.E2470* 0.62 TCGA-EW-A1J5-01 1 109813557 109813557 G A CELSR2 Missense_Mutation p.V2498M 0.56 deleterious(0.01) probably_damaging(1) TCGA-EW-A1J5-01 1 109813628 109813628 G C CELSR2 Missense_Mutation p.W2521C 0.59 deleterious(0) probably_damaging(0.983) TCGA-EW-A1J5-01 1 109813902 109813902 G C CELSR2 Missense_Mutation p.E2554Q 0.65 tolerated(0.07) benign(0.303) TCGA-EW-A1J5-01 1 111781412 111781412 C T CHI3L2 Missense_Mutation p.S259L 0.08 deleterious(0.04) benign(0.027) TCGA-EW-A1J5-01 1 118558619 118558619 G C SPAG17 Missense_Mutation p.S1419C 0.11 tolerated(0.09) possibly_damaging(0.882) TCGA-EW-A1J5-01 1 12030796 12030796 G C PLOD1 Missense_Mutation p.E609Q 0.57 deleterious(0.02) benign(0.082) TCGA-EW-A1J5-01 1 1328173 1328173 C T CCNL2 Intron 0.68 TCGA-EW-A1J5-01 1 144892533 144892533 C T PDE4DIP Missense_Mutation p.E958K 0.08 tolerated(0.25) probably_damaging(0.999) TCGA-EW-A1J5-01 1 145663210 145663210 C G RNF115 Missense_Mutation p.L91V 0.15 tolerated(0.13) possibly_damaging(0.556) TCGA-EW-A1J5-01 1 146696627 146696627 C T FMO5 5'UTR 0.13 TCGA-EW-A1J5-01 1 150198965 150198965 G A ANP32E Missense_Mutation p.S219L 0.31 deleterious(0.01) unknown(0) TCGA-EW-A1J5-01 1 150199026 150199026 C G ANP32E Missense_Mutation p.D199H 0.30 deleterious(0.04) unknown(0) TCGA-EW-A1J5-01 1 150482631 150482631 C G ECM1 Missense_Mutation p.L147V 0.15 tolerated(0.25) benign(0.364) TCGA-EW-A1J5-01 1 150967079 150967079 G A ANXA9 Silent p.L293L 0.16 TCGA-EW-A1J5-01 1 151149393 151149393 G A VPS72 Silent p.F285F 0.09 TCGA-EW-A1J5-01 1 151206928 151206928 G A PIP5K1A Missense_Mutation p.D299N 0.05 deleterious(0.02) possibly_damaging(0.472) TCGA-EW-A1J5-01 1 152284939 152284939 C G FLG Missense_Mutation p.G808A 0.04 probably_damaging(0.999) TCGA-EW-A1J5-01 1 152325364 152325364 G C FLG2 Missense_Mutation p.S1633C 0.28 possibly_damaging(0.612) TCGA-EW-A1J5-01 1 152733187 152733187 G C KPRP Missense_Mutation p.E375Q 0.14 tolerated(0.19) benign(0.007) TCGA-EW-A1J5-01 1 153617600 153617600 G A CHTOP Missense_Mutation p.R201Q 0.13 tolerated(0.35) unknown(0) TCGA-EW-A1J5-01 1 153733514 153733514 C T INTS3 Intron 0.23 TCGA-EW-A1J5-01 1 15439019 15439019 C T KAZN Silent p.L715L 0.61 TCGA-EW-A1J5-01 1 155838164 155838164 C T SYT11 Missense_Mutation p.S148F 0.38 deleterious(0) probably_damaging(0.949) TCGA-EW-A1J5-01 1 156303431 156303431 G A CCT3 Nonsense_Mutation p.Q71* 0.15 TCGA-EW-A1J5-01 1 158390018 158390018 C T OR10K2 Silent p.L213L 0.15 TCGA-EW-A1J5-01 1 158815759 158815759 G C MNDA Missense_Mutation p.G318A 0.10 deleterious(0.01) probably_damaging(1) TCGA-EW-A1J5-01 1 15886128 15886128 G A DNAJC16 Silent p.V377V 0.07 TCGA-EW-A1J5-01 1 160309713 160309713 C G COPA Missense_Mutation p.D72H 0.05 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 1 160924552 160924552 G A ITLN2 5'UTR 0.15 TCGA-EW-A1J5-01 1 161088976 161088976 G A NIT1 Missense_Mutation p.V51M 0.36 deleterious(0) probably_damaging(0.97) TCGA-EW-A1J5-01 1 161166344 161166344 C A ADAMTS4 Intron 0.38 TCGA-EW-A1J5-01 1 161596055 161596055 G A FCGR3B Missense_Mutation p.H189Y 0.29 tolerated(1) benign(0) TCGA-EW-A1J5-01 1 16916459 16916459 C T NBPF1 Silent p.L71L 0.09 TCGA-EW-A1J5-01 1 169510871 169510871 G C F5 Missense_Mutation p.L1153V 0.21 tolerated(0.56) benign(0.059) TCGA-EW-A1J5-01 1 171621262 171621262 C T MYOC Missense_Mutation p.E164K 0.34 tolerated(0.21) benign(0.003) TCGA-EW-A1J5-01 1 172571319 172571319 C T SUCO Missense_Mutation p.S1045L 0.16 tolerated(0.05) benign(0.14) TCGA-EW-A1J5-01 1 174417741 174417741 G C GPR52 Missense_Mutation p.L164F 0.05 deleterious(0.02) probably_damaging(0.914) TCGA-EW-A1J5-01 1 174969168 174969168 G C CACYBP 5'UTR 0.55 TCGA-EW-A1J5-01 1 178410736 178410736 G C RASAL2 Missense_Mutation p.R294T 0.19 deleterious(0) probably_damaging(0.998) TCGA-EW-A1J5-01 1 179347855 179347855 C T AXDND1 Missense_Mutation p.S153L 0.04 deleterious(0.01) possibly_damaging(0.587) TCGA-EW-A1J5-01 1 17950986 17950986 C T ARHGEF10L Silent p.L435L 0.71 TCGA-EW-A1J5-01 1 179887000 179887000 G C TOR1AIP1 Missense_Mutation p.E460Q 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-EW-A1J5-01 1 179989616 179989616 C T CEP350 Missense_Mutation p.H903Y 0.13 possibly_damaging(0.861) TCGA-EW-A1J5-01 1 185120963 185120963 C G TRMT1L Missense_Mutation p.D114H 0.35 tolerated_low_confidence(0.24) benign(0.336) TCGA-EW-A1J5-01 1 185276197 185276197 C T IVNS1ABP Silent p.V202V 0.17 TCGA-EW-A1J5-01 1 186057115 186057115 G A HMCN1 Missense_Mutation p.D3139N 0.11 probably_damaging(0.998) TCGA-EW-A1J5-01 1 186303607 186303607 G C TPR Missense_Mutation p.P1678A 0.18 benign(0.01) TCGA-EW-A1J5-01 1 186648206 186648206 C T PTGS2 Missense_Mutation p.M99I 0.10 deleterious(0) possibly_damaging(0.811) TCGA-EW-A1J5-01 1 190067044 190067044 G C BRINP3 3'UTR 0.31 TCGA-EW-A1J5-01 1 200017590 200017590 C T NR5A2 Missense_Mutation p.H252Y 0.23 tolerated(0.18) benign(0.002) TCGA-EW-A1J5-01 1 200801337 200801337 C T CAMSAP2 Missense_Mutation p.R219W 0.15 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 1 204412635 204412635 C A PIK3C2B Silent p.L986L 0.37 TCGA-EW-A1J5-01 1 21072124 21072124 C G HP1BP3 Missense_Mutation p.E427Q 0.58 tolerated(0.59) benign(0.004) TCGA-EW-A1J5-01 1 214557650 214557650 C G PTPN14 Missense_Mutation p.Q516H 0.17 tolerated(0.54) benign(0) TCGA-EW-A1J5-01 1 22150524 22150524 C G LDLRAD2 3'UTR 0.56 TCGA-EW-A1J5-01 1 22150860 22150860 C T HSPG2 Missense_Mutation p.E4252K 0.61 benign(0.01) TCGA-EW-A1J5-01 1 22150890 22150890 C G LDLRAD2 3'UTR 0.70 TCGA-EW-A1J5-01 1 223177316 223177316 G C DISP1 Missense_Mutation p.W859C 0.14 deleterious(0) probably_damaging(0.981) TCGA-EW-A1J5-01 1 223396894 223396894 C T SUSD4 Missense_Mutation p.E381K 0.46 deleterious(0) probably_damaging(0.994) TCGA-EW-A1J5-01 1 223718144 223718144 G A CAPN8 Silent p.L612L 0.15 TCGA-EW-A1J5-01 1 228612849 228612849 C T HIST3H3 Missense_Mutation p.E60K 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.624) TCGA-EW-A1J5-01 1 229683381 229683381 G C ABCB10 Missense_Mutation p.F262L 0.14 deleterious(0) possibly_damaging(0.685) TCGA-EW-A1J5-01 1 235316075 235316075 C A RBM34 Silent p.L201L 0.13 TCGA-EW-A1J5-01 1 235419061 235419061 C A ARID4B Missense_Mutation p.G63V 0.05 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 1 237664064 237664064 G A RYR2 Missense_Mutation p.D753N 0.11 possibly_damaging(0.903) TCGA-EW-A1J5-01 1 237670041 237670041 G A RYR2 Missense_Mutation p.R882K 0.11 possibly_damaging(0.783) TCGA-EW-A1J5-01 1 238053239 238053239 C T ZP4 Missense_Mutation p.E110K 0.18 deleterious(0) possibly_damaging(0.87) TCGA-EW-A1J5-01 1 247655373 247655373 C T OR2W5 RNA 0.24 TCGA-EW-A1J5-01 1 248023925 248023925 C T TRIM58 Missense_Mutation p.L143F 0.09 tolerated(0.05) possibly_damaging(0.686) TCGA-EW-A1J5-01 1 248113011 248113011 C G OR2L8 Silent p.L284L 0.28 TCGA-EW-A1J5-01 1 248129439 248129439 C A OR2AK2 Missense_Mutation p.T269N 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-EW-A1J5-01 1 248616623 248616623 C T OR2T2 Silent p.I175I 0.09 TCGA-EW-A1J5-01 1 29314172 29314172 G C EPB41 Missense_Mutation p.E75Q 0.49 tolerated(0.06) probably_damaging(0.995) TCGA-EW-A1J5-01 1 57756792 57756792 C T DAB1 5'UTR 0.57 TCGA-EW-A1J5-01 1 5925232 5925232 G C NPHP4 Missense_Mutation p.S1249C 0.73 deleterious(0) probably_damaging(0.952) TCGA-EW-A1J5-01 1 6202253 6202253 G A CHD5 Missense_Mutation p.R791W 0.39 deleterious(0.01) possibly_damaging(0.812) TCGA-EW-A1J5-01 1 66834514 66834514 C T PDE4B Silent p.T569T 0.50 TCGA-EW-A1J5-01 1 67155912 67155912 C A SGIP1 Missense_Mutation p.P495T 0.57 deleterious(0.03) probably_damaging(0.981) TCGA-EW-A1J5-01 1 93651899 93651899 C T CCDC18 Intron 0.58 TCGA-EW-A1J5-01 20 30556266 30556266 C T XKR7 Silent p.F96F 0.38 TCGA-EW-A1J5-01 20 35381196 35381196 G A DSN1 Nonsense_Mutation p.Q356* 0.29 TCGA-EW-A1J5-01 20 40161706 40161706 C T CHD6 Silent p.T179T 0.21 TCGA-EW-A1J5-01 20 44856247 44856247 C G CDH22 Silent p.V190V 0.17 TCGA-EW-A1J5-01 20 47621682 47621682 G A ARFGEF2 Missense_Mutation p.E1170K 0.25 deleterious(0) probably_damaging(0.996) TCGA-EW-A1J5-01 20 48164524 48164524 G A PTGIS Silent p.L77L 0.18 TCGA-EW-A1J5-01 20 48256231 48256231 C G B4GALT5 Missense_Mutation p.D301H 0.20 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 20 49510991 49510991 G C ADNP Missense_Mutation p.S87C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EW-A1J5-01 20 50407290 50407290 G C SALL4 Missense_Mutation p.Q578E 0.16 deleterious(0) probably_damaging(0.977) TCGA-EW-A1J5-01 20 57571764 57571764 G A CTSZ Missense_Mutation p.S244F 0.26 deleterious(0) probably_damaging(0.996) TCGA-EW-A1J5-01 20 58460989 58460989 G A SYCP2 Silent p.L841L 0.18 TCGA-EW-A1J5-01 20 58470578 58470578 G A SYCP2 Nonsense_Mutation p.Q527* 0.31 TCGA-EW-A1J5-01 20 7866374 7866374 G C HAO1 Missense_Mutation p.I317M 0.22 tolerated(0.05) possibly_damaging(0.709) TCGA-EW-A1J5-01 21 34951791 34951791 G C DONSON Missense_Mutation p.I476M 0.26 deleterious(0) possibly_damaging(0.851) TCGA-EW-A1J5-01 21 43792845 43792845 C G TMPRSS3 3'UTR 0.29 TCGA-EW-A1J5-01 21 45656866 45656866 G A ICOSLG Missense_Mutation p.S97F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 21 45929232 45929232 C T TSPEAR Missense_Mutation p.G535E 0.15 tolerated(0.1) possibly_damaging(0.61) TCGA-EW-A1J5-01 21 46047160 46047160 G C KRTAP10-9 Missense_Mutation p.E24D 0.28 deleterious(0.01) unknown(0) TCGA-EW-A1J5-01 21 47552403 47552403 G A COL6A2 Silent p.E999E 0.35 TCGA-EW-A1J5-01 22 17956715 17956715 G A CECR2 Missense_Mutation p.R30K 0.30 tolerated(0.08) probably_damaging(0.994) TCGA-EW-A1J5-01 22 19373041 19373041 C T HIRA Intron 0.29 TCGA-EW-A1J5-01 22 22319685 22319685 C G TOP3B Missense_Mutation p.E305D 0.32 tolerated(0.05) benign(0.345) TCGA-EW-A1J5-01 22 22730813 22730813 C T IGLV5-45 Missense_Mutation p.S103F 0.24 deleterious(0.02) possibly_damaging(0.57) TCGA-EW-A1J5-01 22 23401817 23401817 C A RTDR1 Silent p.L290L 0.36 TCGA-EW-A1J5-01 22 28395526 28395526 G A TTC28 Intron 0.42 TCGA-EW-A1J5-01 22 35943080 35943080 C T RASD2 Missense_Mutation p.S75F 0.33 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 22 36708234 36708234 C T MYH9 Missense_Mutation p.E530K 0.23 probably_damaging(0.976) TCGA-EW-A1J5-01 22 36907562 36907562 C G EIF3D Missense_Mutation p.E541Q 0.31 tolerated(0.29) unknown(0) TCGA-EW-A1J5-01 22 38882173 38882173 G C DDX17 Missense_Mutation p.Q655E 0.35 tolerated_low_confidence(0.14) benign(0.031) TCGA-EW-A1J5-01 22 40662525 40662525 C G TNRC6B Missense_Mutation p.S764C 0.41 deleterious(0.02) possibly_damaging(0.572) TCGA-EW-A1J5-01 22 44178058 44178059 AC T EFCAB6 Splice_Site p.X47_splice 0.30 TCGA-EW-A1J5-01 22 44892894 44892894 G A LDOC1L Silent p.L181L 0.33 TCGA-EW-A1J5-01 22 46652556 46652556 C T PKDREJ Missense_Mutation p.D2222N 0.29 tolerated(0.54) benign(0.009) TCGA-EW-A1J5-01 22 46652574 46652574 C T PKDREJ Missense_Mutation p.E2216K 0.35 tolerated(0.06) benign(0.161) TCGA-EW-A1J5-01 2 102456320 102456320 G A MAP4K4 Silent p.V271V 0.30 TCGA-EW-A1J5-01 2 102456440 102456440 G A MAP4K4 Silent p.K311K 0.30 TCGA-EW-A1J5-01 2 109389434 109389434 G A RANBP2 Missense_Mutation p.D2742N 0.37 deleterious(0.03) benign(0.104) TCGA-EW-A1J5-01 2 15467970 15467970 G A NBAS Nonsense_Mutation p.Q1496* 0.16 TCGA-EW-A1J5-01 2 160035418 160035418 G C TANC1 Missense_Mutation p.E752Q 0.33 tolerated(0.09) possibly_damaging(0.713) TCGA-EW-A1J5-01 2 160176856 160176856 C T BAZ2B Missense_Mutation p.D2143N 0.29 benign(0.11) TCGA-EW-A1J5-01 2 167273255 167273255 C T SCN7A Missense_Mutation p.D1126N 0.27 deleterious(0.01) possibly_damaging(0.738) TCGA-EW-A1J5-01 2 179426201 179426201 C T TTN Missense_Mutation p.D28220N 0.17 TCGA-EW-A1J5-01 2 179427679 179427679 G C TTN Nonsense_Mutation p.S27727* 0.38 TCGA-EW-A1J5-01 2 190660667 190660667 G A PMS1 Missense_Mutation p.C102Y 0.30 deleterious(0) benign(0.367) TCGA-EW-A1J5-01 2 191236080 191236080 C T INPP1 Silent p.F384F 0.23 TCGA-EW-A1J5-01 2 191354510 191354510 C T MFSD6 Silent p.F603F 0.34 TCGA-EW-A1J5-01 2 197183447 197183447 C T HECW2 Missense_Mutation p.E723K 0.47 tolerated_low_confidence(0.24) benign(0.038) TCGA-EW-A1J5-01 2 198498526 198498526 C A RFTN2 Nonsense_Mutation p.E212* 0.29 TCGA-EW-A1J5-01 2 203765825 203765825 C G WDR12 Missense_Mutation p.E52Q 0.20 deleterious(0.03) possibly_damaging(0.544) TCGA-EW-A1J5-01 2 21231201 21231201 C G APOB Missense_Mutation p.G2847R 0.39 benign(0.007) TCGA-EW-A1J5-01 2 220115948 220115948 G C TUBA4A Missense_Mutation p.S158C 0.40 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EW-A1J5-01 2 220247855 220247855 C G DNPEP Missense_Mutation p.E312Q 0.24 deleterious(0.01) probably_damaging(0.941) TCGA-EW-A1J5-01 2 234237145 234237145 C T SAG Silent p.I178I 0.21 TCGA-EW-A1J5-01 2 234847752 234847752 G T TRPM8 Missense_Mutation p.K153N 0.19 deleterious(0.05) possibly_damaging(0.632) TCGA-EW-A1J5-01 2 242572453 242572453 C T THAP4 Silent p.L373L 0.44 TCGA-EW-A1J5-01 2 26538505 26538505 C T GPR113 Silent p.L269L 0.42 TCGA-EW-A1J5-01 2 27430197 27430197 G A SLC5A6 Silent p.L108L 0.21 TCGA-EW-A1J5-01 2 27599541 27599541 C T SNX17 Silent p.V456V 0.35 TCGA-EW-A1J5-01 2 42990854 42990854 C G OXER1 Missense_Mutation p.E156Q 0.47 tolerated(0.17) possibly_damaging(0.67) TCGA-EW-A1J5-01 2 55573390 55573390 C G CCDC88A Missense_Mutation p.R321T 0.28 deleterious(0) possibly_damaging(0.506) TCGA-EW-A1J5-01 2 61622053 61622053 C G USP34 Missense_Mutation p.E230Q 0.28 deleterious(0.01) probably_damaging(0.954) TCGA-EW-A1J5-01 2 64780084 64780084 G C AFTPH Missense_Mutation p.E492D 0.30 tolerated(0.2) possibly_damaging(0.673) TCGA-EW-A1J5-01 2 70187836 70187836 C T ASPRV1 Missense_Mutation p.E329K 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-EW-A1J5-01 2 70188183 70188183 G A ASPRV1 Missense_Mutation p.S213F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 2 70439953 70439953 C G TIA1 Missense_Mutation p.W353C 0.39 deleterious(0.03) benign(0.062) TCGA-EW-A1J5-01 2 86272802 86272802 C T POLR1A Missense_Mutation p.E942K 0.35 deleterious(0) benign(0.141) TCGA-EW-A1J5-01 2 88857341 88857341 G A EIF2AK3 Silent p.L1088L 0.30 TCGA-EW-A1J5-01 2 90060741 90060741 C T IGKV6D-21 Nonsense_Mutation p.Q30* 0.22 TCGA-EW-A1J5-01 3 11831994 11831994 C T TAMM41 Silent p.L312L 0.33 TCGA-EW-A1J5-01 3 125696002 125696002 G - ROPN1B Frame_Shift_Del p.G131Efs*10 0.21 TCGA-EW-A1J5-01 3 126220075 126220075 G A UROC1 Silent p.N377N 0.31 TCGA-EW-A1J5-01 3 126751260 126751260 C G PLXNA1 Missense_Mutation p.I1754M 0.26 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 3 133473506 133473506 C G TF Missense_Mutation p.L165V 0.32 tolerated(0.45) benign(0.007) TCGA-EW-A1J5-01 3 133530017 133530017 C A SRPRB Missense_Mutation p.F128L 0.38 tolerated(0.08) benign(0.012) TCGA-EW-A1J5-01 3 134266255 134266255 G A CEP63 Silent p.L336L 0.25 TCGA-EW-A1J5-01 3 142537061 142537061 C T PCOLCE2 3'UTR 0.33 TCGA-EW-A1J5-01 3 156660380 156660380 G C LEKR1 Missense_Mutation p.E208Q 0.28 tolerated(0.25) possibly_damaging(0.617) TCGA-EW-A1J5-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-EW-A1J5-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.32 tolerated(0.36) benign(0.4) TCGA-EW-A1J5-01 3 185198077 185198077 C G MAP3K13 Missense_Mutation p.F853L 0.38 tolerated_low_confidence(0.74) benign(0.003) TCGA-EW-A1J5-01 3 190366258 190366258 C T IL1RAP Intron 0.24 TCGA-EW-A1J5-01 3 193032846 193032846 G A ATP13A5 Silent p.L691L 0.27 TCGA-EW-A1J5-01 3 196746660 196746660 C T MFI2 Intron 0.06 TCGA-EW-A1J5-01 3 19924193 19924193 C T EFHB Missense_Mutation p.R726Q 0.25 deleterious(0) probably_damaging(0.982) TCGA-EW-A1J5-01 3 31661244 31661244 G A STT3B Missense_Mutation p.D417N 0.25 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 3 37988634 37988634 G C CTDSPL Missense_Mutation p.E56Q 0.30 tolerated(0.2) benign(0.04) TCGA-EW-A1J5-01 3 41938469 41938469 G C ULK4 Missense_Mutation p.Q459E 0.29 tolerated(0.94) benign(0.004) TCGA-EW-A1J5-01 3 44283838 44283838 G A TOPAZ1 Missense_Mutation p.R98Q 0.28 tolerated(0.67) benign(0.001) TCGA-EW-A1J5-01 3 47158173 47158173 C G SETD2 Missense_Mutation p.R1509T 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-EW-A1J5-01 3 47957724 47957724 G A MAP4 Silent p.I531I 0.23 TCGA-EW-A1J5-01 3 48694738 48694738 G A CELSR3 Silent p.V1264V 0.29 TCGA-EW-A1J5-01 3 51747097 51747097 C G GRM2 Missense_Mutation p.F353L 0.31 deleterious(0) probably_damaging(0.988) TCGA-EW-A1J5-01 3 69230351 69230351 C G FRMD4B Missense_Mutation p.Q850H 0.26 tolerated(0.54) benign(0) TCGA-EW-A1J5-01 3 73004303 73004303 C T GXYLT2 Silent p.L219L 0.37 TCGA-EW-A1J5-01 3 77617518 77617518 G C ROBO2 Missense_Mutation p.G651A 0.45 tolerated(0.36) possibly_damaging(0.769) TCGA-EW-A1J5-01 3 79639053 79639053 C G ROBO1 Missense_Mutation p.W3C 0.32 deleterious_low_confidence(0) benign(0.024) TCGA-EW-A1J5-01 4 110222887 110222887 G C COL25A1 Missense_Mutation p.L97V 0.30 tolerated(0.15) unknown(0) TCGA-EW-A1J5-01 4 118975584 118975584 G C NDST3 Missense_Mutation p.Q173H 0.17 tolerated(0.46) possibly_damaging(0.549) TCGA-EW-A1J5-01 4 126369700 126369700 C T FAT4 Missense_Mutation p.S2510F 0.25 probably_damaging(0.945) TCGA-EW-A1J5-01 4 187628122 187628122 G A FAT1 Missense_Mutation p.P954S 0.33 probably_damaging(1) TCGA-EW-A1J5-01 4 25930812 25930812 G C SMIM20 Nonstop_Mutation p.*68Sext*7 0.05 TCGA-EW-A1J5-01 4 27009196 27009196 G T STIM2 Silent p.L341L 0.29 TCGA-EW-A1J5-01 4 37841763 37841763 G C PGM2 Missense_Mutation p.E201Q 0.27 tolerated(0.06) benign(0.141) TCGA-EW-A1J5-01 4 42895457 42895457 C T GRXCR1 Silent p.S58S 0.20 TCGA-EW-A1J5-01 4 48076019 48076019 G C TXK Missense_Mutation p.I430M 0.33 deleterious(0.01) possibly_damaging(0.766) TCGA-EW-A1J5-01 4 55161526 55161526 G C PDGFRA 3'UTR 0.29 TCGA-EW-A1J5-01 4 5830269 5830269 G A CRMP1 Missense_Mutation p.P584S 0.25 tolerated(0.08) benign(0.034) TCGA-EW-A1J5-01 4 62897274 62897274 C T LPHN3 Silent p.F1111F 0.29 TCGA-EW-A1J5-01 4 71068917 71068917 C G ODAM 3'UTR 0.29 TCGA-EW-A1J5-01 4 71654529 71654529 G A RUFY3 Missense_Mutation p.E360K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 4 78527005 78527005 C T CXCL13 5'UTR 0.33 TCGA-EW-A1J5-01 4 83905683 83905683 C G LIN54 Missense_Mutation p.Q105H 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.641) TCGA-EW-A1J5-01 4 89334350 89334350 G A HERC6 Nonsense_Mutation p.W497* 0.33 TCGA-EW-A1J5-01 5 110454814 110454814 C G WDR36 Missense_Mutation p.L690V 0.16 deleterious(0) possibly_damaging(0.881) TCGA-EW-A1J5-01 5 110712636 110712636 G C CAMK4 Missense_Mutation p.D128H 0.33 deleterious(0) possibly_damaging(0.847) TCGA-EW-A1J5-01 5 110814119 110814119 C T CAMK4 Nonsense_Mutation p.Q248* 0.25 TCGA-EW-A1J5-01 5 111531377 111531377 C G EPB41L4A Missense_Mutation p.D469H 0.29 tolerated(0.1) benign(0.219) TCGA-EW-A1J5-01 5 121759191 121759191 C T SNCAIP Silent p.N253N 0.18 TCGA-EW-A1J5-01 5 130846097 130846097 C T RAPGEF6 Missense_Mutation p.E239K 0.31 tolerated(0.35) benign(0.04) TCGA-EW-A1J5-01 5 134164380 134164380 G A DDX46 Missense_Mutation p.R1027K 0.16 tolerated(0.18) probably_damaging(0.997) TCGA-EW-A1J5-01 5 137289107 137289107 C G FAM13B Missense_Mutation p.R567T 0.23 tolerated(0.32) benign(0.187) TCGA-EW-A1J5-01 5 137727351 137727351 C G KDM3B Missense_Mutation p.S677C 0.21 deleterious_low_confidence(0.04) benign(0.43) TCGA-EW-A1J5-01 5 140022222 140022222 C T TMCO6 Silent p.L219L 0.31 TCGA-EW-A1J5-01 5 140047905 140047905 C T WDR55 Missense_Mutation p.S93F 0.05 deleterious(0) probably_damaging(0.987) TCGA-EW-A1J5-01 5 140070834 140070834 C T HARS Missense_Mutation p.R19Q 0.26 tolerated(0.15) possibly_damaging(0.746) TCGA-EW-A1J5-01 5 140718650 140718650 G C PCDHGA2 Missense_Mutation p.E38Q 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EW-A1J5-01 5 140731936 140731936 G A PCDHGB1 Silent p.V703V 0.08 TCGA-EW-A1J5-01 5 140798462 140798462 G A PCDHGB7 Missense_Mutation p.E346K 0.33 deleterious(0.01) possibly_damaging(0.744) TCGA-EW-A1J5-01 5 14601228 14601228 G A FAM105A Silent p.L73L 0.35 TCGA-EW-A1J5-01 5 158139314 158139314 G A EBF1 Missense_Mutation p.S466L 0.24 deleterious_low_confidence(0.03) benign(0.286) TCGA-EW-A1J5-01 5 167671524 167671524 G A TENM2 Missense_Mutation p.D1874N 0.27 tolerated(0.1) probably_damaging(0.947) TCGA-EW-A1J5-01 5 167984582 167984582 G A PANK3 Silent p.F369F 0.25 TCGA-EW-A1J5-01 5 179225428 179225428 G A MGAT4B Nonsense_Mutation p.Q492* 0.47 TCGA-EW-A1J5-01 5 180477193 180477193 G C BTNL9 Missense_Mutation p.R187T 0.29 tolerated(0.06) benign(0.01) TCGA-EW-A1J5-01 5 32229744 32229744 C G MTMR12 3'UTR 0.30 TCGA-EW-A1J5-01 5 34813753 34813753 C G RAI14 Missense_Mutation p.I283M 0.22 deleterious(0.02) possibly_damaging(0.724) TCGA-EW-A1J5-01 5 67590481 67590481 G A PIK3R1 Missense_Mutation p.E515K 0.31 deleterious(0.01) possibly_damaging(0.743) TCGA-EW-A1J5-01 5 78350099 78350099 G A DMGDH Nonsense_Mutation p.Q150* 0.31 TCGA-EW-A1J5-01 5 82491606 82491606 C T XRCC4 Silent p.F111F 0.21 TCGA-EW-A1J5-01 5 88119619 88119619 C TG MEF2C 5'UTR 0.21 TCGA-EW-A1J5-01 6 106967799 106967799 G C AIM1 Missense_Mutation p.E498Q 0.40 tolerated_low_confidence(0.05) possibly_damaging(0.556) TCGA-EW-A1J5-01 6 106968627 106968627 G C AIM1 Missense_Mutation p.D774H 0.08 deleterious(0.02) possibly_damaging(0.799) TCGA-EW-A1J5-01 6 110424677 110424677 C G WASF1 Missense_Mutation p.R266T 0.38 tolerated(0.27) unknown(0) TCGA-EW-A1J5-01 6 110434547 110434547 C T WASF1 Missense_Mutation p.D84N 0.41 deleterious(0) unknown(0) TCGA-EW-A1J5-01 6 128222116 128222116 G A THEMIS 5'UTR 0.44 TCGA-EW-A1J5-01 6 13801535 13801535 G A MCUR1 Silent p.L242L 0.25 TCGA-EW-A1J5-01 6 147123923 147123923 G A ADGB Intron 0.32 TCGA-EW-A1J5-01 6 151694745 151694745 G C ZBTB2 Missense_Mutation p.L10V 0.51 deleterious(0) probably_damaging(0.967) TCGA-EW-A1J5-01 6 17292010 17292010 C T RBM24 Missense_Mutation p.P124L 0.43 deleterious(0) probably_damaging(0.992) TCGA-EW-A1J5-01 6 26043570 26043570 C A HIST1H2BB Nonsense_Mutation p.E106* 0.35 TCGA-EW-A1J5-01 6 26368441 26368441 C T BTN3A2 Silent p.L11L 0.30 TCGA-EW-A1J5-01 6 28227294 28227294 G A NKAPL Missense_Mutation p.E49K 0.29 deleterious(0.02) unknown(0) TCGA-EW-A1J5-01 6 29589569 29589569 C T GABBR1 Missense_Mutation p.G364E 0.28 deleterious(0) probably_damaging(0.979) TCGA-EW-A1J5-01 6 31833105 31833105 G C SLC44A4 Missense_Mutation p.R583G 0.32 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 6 35446093 35446093 G A TEAD3 Silent p.S163S 0.43 TCGA-EW-A1J5-01 6 35446243 35446243 G A TEAD3 Silent p.L150L 0.50 TCGA-EW-A1J5-01 6 36995215 36995215 C T FGD2 Missense_Mutation p.S539L 0.29 tolerated(0.08) benign(0.001) TCGA-EW-A1J5-01 6 41046865 41046865 G C NFYA Missense_Mutation p.E13Q 0.07 deleterious_low_confidence(0) unknown(0) TCGA-EW-A1J5-01 6 42712863 42712863 C T TBCC Missense_Mutation p.D317N 0.08 tolerated(0.15) benign(0.003) TCGA-EW-A1J5-01 6 46766377 46766377 C G MEP1A Silent p.L60L 0.28 TCGA-EW-A1J5-01 6 46826397 46826397 G C GPR116 Silent p.L1081L 0.08 TCGA-EW-A1J5-01 6 46828604 46828604 C T GPR116 Missense_Mutation p.E743K 0.34 tolerated(0.52) benign(0.003) TCGA-EW-A1J5-01 6 49399509 49399509 G A MUT Missense_Mutation p.P729S 0.25 tolerated_low_confidence(0.26) probably_damaging(0.954) TCGA-EW-A1J5-01 6 51524758 51524758 C G PKHD1 Missense_Mutation p.R3389T 0.38 deleterious(0) possibly_damaging(0.851) TCGA-EW-A1J5-01 6 6654780 6654780 G A LY86 Missense_Mutation p.E137K 0.46 tolerated(0.22) benign(0.006) TCGA-EW-A1J5-01 6 69728378 69728378 G A BAI3 Missense_Mutation p.M698I 0.09 deleterious(0) benign(0.061) TCGA-EW-A1J5-01 6 70462186 70462186 C T LMBRD1 Missense_Mutation p.E124K 0.42 deleterious(0) possibly_damaging(0.647) TCGA-EW-A1J5-01 6 83904032 83904032 T G RWDD2A Intron 0.60 TCGA-EW-A1J5-01 7 103143529 103143529 G A RELN Missense_Mutation p.S2808F 0.08 deleterious(0.01) possibly_damaging(0.781) TCGA-EW-A1J5-01 7 107706938 107706938 C T LAMB4 Missense_Mutation p.A852T 0.07 tolerated(0.27) benign(0.156) TCGA-EW-A1J5-01 7 110763804 110763804 C G LRRN3 Missense_Mutation p.H326D 0.25 tolerated(0.16) probably_damaging(1) TCGA-EW-A1J5-01 7 116371761 116371761 G A MET Missense_Mutation p.D414N 0.29 tolerated(0.21) probably_damaging(0.956) TCGA-EW-A1J5-01 7 117227866 117227866 G C CFTR Missense_Mutation p.R553P 0.32 deleterious(0) probably_damaging(0.989) TCGA-EW-A1J5-01 7 117251828 117251828 C G CFTR Missense_Mutation p.F1111L 0.29 tolerated(0.11) benign(0.225) TCGA-EW-A1J5-01 7 122338358 122338358 G A RNF133 Silent p.F205F 0.24 TCGA-EW-A1J5-01 7 127670274 127670274 G A LRRC4 Silent p.S140S 0.12 TCGA-EW-A1J5-01 7 148080896 148080896 G A CNTNAP2 Missense_Mutation p.E1211K 0.26 deleterious(0.02) benign(0.109) TCGA-EW-A1J5-01 7 150217320 150217320 C T GIMAP7 Silent p.I86I 0.24 TCGA-EW-A1J5-01 7 150911106 150911106 G C ABCF2 Intron 0.21 TCGA-EW-A1J5-01 7 152027786 152027786 C G KMT2C Missense_Mutation p.E97Q 0.35 possibly_damaging(0.864) TCGA-EW-A1J5-01 7 21784183 21784183 G A DNAH11 Missense_Mutation p.R2768K 0.45 benign(0.001) TCGA-EW-A1J5-01 7 2274737 2274737 G C FTSJ2 3'UTR 0.24 TCGA-EW-A1J5-01 7 2274964 2274964 G T FTSJ2 Silent p.L178L 0.30 TCGA-EW-A1J5-01 7 23180527 23180527 C A KLHL7 Silent p.L194L 0.29 TCGA-EW-A1J5-01 7 39446249 39446249 G A POU6F2 Missense_Mutation p.M312I 0.42 tolerated(0.15) unknown(0) TCGA-EW-A1J5-01 7 39612069 39612069 G C YAE1D1 Missense_Mutation p.E149Q 0.20 tolerated(0.29) benign(0.022) TCGA-EW-A1J5-01 7 44734059 44734059 G A OGDH Missense_Mutation p.E518K 0.31 deleterious(0) probably_damaging(0.998) TCGA-EW-A1J5-01 7 65220808 65220808 G A SNORA22 3'Flank 0.38 TCGA-EW-A1J5-01 7 79082424 79082424 C T MAGI2 Silent p.E71E 0.50 TCGA-EW-A1J5-01 7 82467571 82467571 C T PCLO Missense_Mutation p.D4729N 0.20 unknown(0) TCGA-EW-A1J5-01 7 83675694 83675694 G A SEMA3A Missense_Mutation p.L205F 0.28 deleterious(0.05) probably_damaging(0.996) TCGA-EW-A1J5-01 7 88965217 88965217 G A ZNF804B Missense_Mutation p.R974K 0.21 tolerated(0.92) benign(0.025) TCGA-EW-A1J5-01 7 92764738 92764738 G C SAMD9L Missense_Mutation p.L183V 0.33 deleterious(0) possibly_damaging(0.858) TCGA-EW-A1J5-01 7 92979256 92979256 G T CCDC132 Nonsense_Mutation p.E792* 0.28 TCGA-EW-A1J5-01 7 98588227 98588227 G C TRRAP Missense_Mutation p.L3251F 0.24 probably_damaging(0.969) TCGA-EW-A1J5-01 7 99905564 99905564 C G SPDYE3 Nonsense_Mutation p.S19* 0.29 TCGA-EW-A1J5-01 7 99913451 99913451 G A SPDYE3 Silent p.L415L 0.04 TCGA-EW-A1J5-01 8 123966044 123966044 C T ZHX2 Missense_Mutation p.S765L 0.08 tolerated(0.1) benign(0.001) TCGA-EW-A1J5-01 8 124544170 124544170 G C FBXO32 Missense_Mutation p.L114V 0.23 deleterious(0.05) benign(0.204) TCGA-EW-A1J5-01 8 142517208 142517208 C T MROH5 Silent p.P14P 0.21 TCGA-EW-A1J5-01 8 145066883 145066883 G A GRINA Silent p.L330L 0.24 TCGA-EW-A1J5-01 8 145621563 145621563 C T CPSF1 Silent p.Q993Q 0.33 TCGA-EW-A1J5-01 8 145730399 145730399 C G GPT Missense_Mutation p.S127C 0.27 tolerated(0.18) possibly_damaging(0.684) TCGA-EW-A1J5-01 8 145999258 145999258 C G ZNF34 Missense_Mutation p.G359A 0.29 deleterious(0) probably_damaging(1) TCGA-EW-A1J5-01 8 27457503 27457503 G A CLU Nonsense_Mutation p.Q320* 0.38 TCGA-EW-A1J5-01 8 35606082 35606082 G A UNC5D Missense_Mutation p.E602K 0.24 deleterious(0.04) possibly_damaging(0.848) TCGA-EW-A1J5-01 8 42620327 42620327 C T CHRNA6 Missense_Mutation p.E34K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 8 48811083 48811083 G A PRKDC Silent p.I1137I 0.34 TCGA-EW-A1J5-01 8 57026109 57026109 C G MOS Missense_Mutation p.V145L 0.38 tolerated(0.82) benign(0.037) TCGA-EW-A1J5-01 8 57354326 57354326 G A PENK Silent p.F103F 0.29 TCGA-EW-A1J5-01 8 65527649 65527649 G A CYP7B1 Nonsense_Mutation p.Q331* 0.26 TCGA-EW-A1J5-01 8 69020348 69020348 C G PREX2 Missense_Mutation p.S907C 0.25 deleterious(0) possibly_damaging(0.807) TCGA-EW-A1J5-01 8 77768387 77768387 C T ZFHX4 Missense_Mutation p.T3077M 0.27 benign(0.121) TCGA-EW-A1J5-01 9 107562237 107562237 G A ABCA1 Silent p.I1602I 0.29 TCGA-EW-A1J5-01 9 108397546 108397546 G C FKTN 3'UTR 0.25 TCGA-EW-A1J5-01 9 109689443 109689443 G C ZNF462 Missense_Mutation p.E1084Q 0.23 possibly_damaging(0.72) TCGA-EW-A1J5-01 9 118950076 118950076 G A PAPPA Silent p.V353V 0.24 TCGA-EW-A1J5-01 9 119625984 119625984 C G ASTN2 Missense_Mutation p.E589Q 0.33 deleterious(0.01) unknown(0) TCGA-EW-A1J5-01 9 120476354 120476354 C A TLR4 Missense_Mutation p.L650M 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-EW-A1J5-01 9 123904482 123904482 C G CNTRL Silent p.L935L 0.35 TCGA-EW-A1J5-01 9 123914776 123914776 C G CNTRL Missense_Mutation p.S1326C 0.25 probably_damaging(0.984) TCGA-EW-A1J5-01 9 123919814 123919814 G A CNTRL Missense_Mutation p.E1478K 0.29 benign(0.2) TCGA-EW-A1J5-01 9 125782606 125782606 G C RABGAP1 Silent p.V554V 0.06 TCGA-EW-A1J5-01 9 129928481 129928481 C T RALGPS1 Silent p.S248S 0.05 TCGA-EW-A1J5-01 9 130986618 130986618 G C DNM1 Missense_Mutation p.D429H 0.35 deleterious(0) probably_damaging(0.997) TCGA-EW-A1J5-01 9 131095223 131095223 G C COQ4 Splice_Site p.X209_splice 0.04 TCGA-EW-A1J5-01 9 135205472 135205472 C G SETX Missense_Mutation p.E505Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 9 139687287 139687287 G A TMEM141 3'UTR 0.32 TCGA-EW-A1J5-01 9 32526209 32526209 C G DDX58 5'UTR 0.17 TCGA-EW-A1J5-01 9 4701867 4701867 G C CDC37L1 Missense_Mutation p.E251Q 0.19 tolerated(0.14) possibly_damaging(0.694) TCGA-EW-A1J5-01 9 74817626 74817626 G A GDA Missense_Mutation p.D118N 0.37 tolerated(0.11) benign(0.002) TCGA-EW-A1J5-01 9 77377646 77377646 C T TRPM6 Missense_Mutation p.R1314K 0.29 tolerated_low_confidence(0.2) benign(0.002) TCGA-EW-A1J5-01 9 90582191 90582191 C T CDK20 3'UTR 0.38 TCGA-EW-A1J5-01 9 94172741 94172741 C G NFIL3 Missense_Mutation p.E92D 0.37 deleterious(0) probably_damaging(0.924) TCGA-EW-A1J5-01 9 95378085 95378085 C G IPPK 3'UTR 0.21 TCGA-EW-A1J5-01 9 96238576 96238576 C T FAM120A Missense_Mutation p.H254Y 0.32 tolerated(0.26) probably_damaging(0.933) TCGA-EW-A1J5-01 9 96261150 96261150 C T FAM120A Missense_Mutation p.H338Y 0.32 tolerated(1) benign(0.34) TCGA-EW-A1J5-01 9 97080967 97080967 C G NUTM2F Missense_Mutation p.R684T 0.14 tolerated(0.17) possibly_damaging(0.801) TCGA-EW-A1J5-01 X 100655659 100655659 G C GLA Missense_Mutation p.Q212E 0.24 tolerated(0.74) benign(0.011) TCGA-EW-A1J5-01 X 101972129 101972129 C G GPRASP2 Missense_Mutation p.Q778E 0.26 tolerated(0.13) benign(0.246) TCGA-EW-A1J5-01 X 10442697 10442697 C T MID1 Silent p.E369E 0.30 TCGA-EW-A1J5-01 X 112058819 112058819 G C AMOT Missense_Mutation p.H387D 0.29 unknown(0) TCGA-EW-A1J5-01 X 114868384 114868384 C T PLS3 Silent p.F191F 0.26 TCGA-EW-A1J5-01 X 119589289 119589289 G A LAMP2 Missense_Mutation p.S107F 0.35 deleterious(0.01) possibly_damaging(0.823) TCGA-EW-A1J5-01 X 12157000 12157000 G A FRMPD4 5'UTR 0.60 TCGA-EW-A1J5-01 X 13055963 13055963 C T FAM9C 3'UTR 0.29 TCGA-EW-A1J5-01 X 135741576 135741576 C A CD40LG 3'UTR 0.20 TCGA-EW-A1J5-01 X 138914391 138914391 C T ATP11C 5'UTR 0.36 TCGA-EW-A1J5-01 X 140953296 140953296 C T MAGEC3 Missense_Mutation p.H55Y 0.31 deleterious_low_confidence(0.01) benign(0.043) TCGA-EW-A1J5-01 X 142716423 142716423 C G SLITRK4 Missense_Mutation p.L834F 0.31 tolerated(1) probably_damaging(0.991) TCGA-EW-A1J5-01 X 148564260 148564260 T A IDS 3'UTR 0.29 TCGA-EW-A1J5-01 X 152845591 152845591 G C ATP2B3 Missense_Mutation p.E1166D 0.21 tolerated_low_confidence(0.53) benign(0.005) TCGA-EW-A1J5-01 X 153706294 153706294 C T LAGE3 Missense_Mutation p.V141I 0.32 tolerated(0.18) benign(0.09) TCGA-EW-A1J5-01 X 153924289 153924289 C T GAB3 Missense_Mutation p.R478Q 0.34 tolerated(0.09) possibly_damaging(0.621) TCGA-EW-A1J5-01 X 17047736 17047736 C T REPS2 Missense_Mutation p.S254F 0.34 deleterious(0) possibly_damaging(0.62) TCGA-EW-A1J5-01 X 18949860 18949860 C T PHKA2 Missense_Mutation p.E382K 0.08 tolerated(0.18) benign(0.371) TCGA-EW-A1J5-01 X 30269445 30269445 G A MAGEB1 Missense_Mutation p.E279K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EW-A1J5-01 X 41056704 41056704 C T USP9X Nonsense_Mutation p.Q1441* 0.20 TCGA-EW-A1J5-01 X 45013388 45013388 C T CXorf36 Missense_Mutation p.R243K 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-EW-A1J5-01 X 47918311 47918311 C T ZNF630 Missense_Mutation p.R507K 0.28 tolerated(0.68) possibly_damaging(0.64) TCGA-EW-A1J5-01 X 49071937 49071937 C T CACNA1F Silent p.E1112E 0.31 TCGA-EW-A1J5-01 X 62570743 62570743 G A SPIN4 5'UTR 0.41 TCGA-EW-A1J5-01 X 69497951 69497951 G A ARR3 Missense_Mutation p.D244N 0.05 tolerated(0.12) possibly_damaging(0.757) TCGA-EW-A1J5-01 X 70517738 70517738 G A NONO Missense_Mutation p.E361K 0.40 deleterious(0) benign(0.227) TCGA-EW-A1J5-01 X 72783181 72783181 G A CHIC1 Missense_Mutation p.E21K 0.25 deleterious_low_confidence(0) unknown(0) TCGA-EW-A1J6-01 10 16942845 16942845 G A CUBN Missense_Mutation p.T2730I 0.58 tolerated(0.08) benign(0.208) TCGA-EW-A1J6-01 10 61412689 61412689 G A SLC16A9 Silent p.T457T 0.60 TCGA-EW-A1J6-01 11 108218045 108218045 A G ATM Missense_Mutation p.N2875S 0.64 deleterious(0) probably_damaging(1) TCGA-EW-A1J6-01 11 1265475 1265475 G A MUC5B Silent p.P2455P 0.37 TCGA-EW-A1J6-01 11 130286095 130286095 G A ADAMTS8 Silent p.S409S 0.26 TCGA-EW-A1J6-01 11 32955077 32955078 - A QSER1 Frame_Shift_Ins p.E632Rfs*12 0.41 TCGA-EW-A1J6-01 11 78440581 78440581 C T TENM4 Silent p.P1082P 0.18 TCGA-EW-A1J6-01 12 113825554 113825554 A G PLBD2 Missense_Mutation p.N482S 0.28 deleterious(0.01) possibly_damaging(0.886) TCGA-EW-A1J6-01 12 56503689 56503689 C A PA2G4 Missense_Mutation p.T200N 0.38 tolerated(0.15) benign(0.083) TCGA-EW-A1J6-01 13 100020110 100020110 G A UBAC2 Missense_Mutation p.G293S 0.29 tolerated(0.67) benign(0.009) TCGA-EW-A1J6-01 13 101936304 101936304 G C NALCN Missense_Mutation p.R372G 0.20 tolerated(0.37) benign(0.019) TCGA-EW-A1J6-01 13 102344973 102344973 G A ITGBL1 Missense_Mutation p.G352R 0.42 deleterious(0) possibly_damaging(0.887) TCGA-EW-A1J6-01 17 28022486 28022486 G A SSH2 Silent p.N89N 0.28 TCGA-EW-A1J6-01 17 33768152 33768152 G A SLFN13 Missense_Mutation p.S719L 0.05 tolerated(0.12) benign(0.094) TCGA-EW-A1J6-01 17 39535625 39535625 G T KRT34 Missense_Mutation p.L328M 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-EW-A1J6-01 17 62007651 62007651 G A CD79B Silent p.S72S 0.34 TCGA-EW-A1J6-01 18 21698089 21698089 G A TTC39C Missense_Mutation p.G360D 0.29 deleterious(0) probably_damaging(0.998) TCGA-EW-A1J6-01 18 50450083 50450083 G C DCC Missense_Mutation p.G235A 0.38 tolerated(0.18) benign(0.023) TCGA-EW-A1J6-01 19 10087234 10087234 C T COL5A3 Silent p.P1114P 0.41 TCGA-EW-A1J6-01 19 10798193 10798193 C G ILF3 Missense_Mutation p.S748C 0.42 deleterious(0.01) unknown(0) TCGA-EW-A1J6-01 19 9065563 9065563 C A MUC16 Missense_Mutation p.A7295S 0.05 unknown(0) TCGA-EW-A1J6-01 1 152284604 152284604 C A FLG Missense_Mutation p.A920S 0.39 probably_damaging(0.997) TCGA-EW-A1J6-01 1 17081462 17081462 C T MST1L RNA 0.44 TCGA-EW-A1J6-01 1 175372511 175372511 G A TNR Silent p.D247D 0.67 TCGA-EW-A1J6-01 20 25205861 25205861 C G ENTPD6 Missense_Mutation p.Q422E 0.43 tolerated(1) benign(0.008) TCGA-EW-A1J6-01 22 30775717 30775718 CA - RNF215 Frame_Shift_Del p.C365Qfs*12 0.70 TCGA-EW-A1J6-01 22 46685729 46685729 G A TTC38 Missense_Mutation p.V417I 0.65 tolerated(0.28) benign(0.071) TCGA-EW-A1J6-01 2 165771642 165771642 G C SLC38A11 Missense_Mutation p.T221R 0.10 deleterious(0) probably_damaging(0.987) TCGA-EW-A1J6-01 2 224863029 224863031 TTG - SERPINE2 In_Frame_Del p.N108del 0.80 TCGA-EW-A1J6-01 2 80530639 80530639 G T LRRTM1 Nonsense_Mutation p.C102* 0.64 TCGA-EW-A1J6-01 3 111996653 111996653 G T SLC9C1 Missense_Mutation p.H125N 0.40 deleterious(0.01) benign(0.018) TCGA-EW-A1J6-01 3 130202881 130202881 G C COL6A5 Intron 0.38 TCGA-EW-A1J6-01 3 190026002 190026002 A C CLDN1 3'UTR 0.28 TCGA-EW-A1J6-01 4 107956767 107956767 C A DKK2 5'UTR 0.70 TCGA-EW-A1J6-01 5 146777319 146777319 G T DPYSL3 Silent p.G571G 0.36 TCGA-EW-A1J6-01 5 5457497 5457497 G T KIAA0947 Silent p.T248T 0.38 TCGA-EW-A1J6-01 5 9108318 9108318 G A SEMA5A Silent p.C669C 0.38 TCGA-EW-A1J6-01 6 76540247 76540247 C T MYO6 Missense_Mutation p.H126Y 0.70 deleterious(0) unknown(0) TCGA-EW-A1J6-01 7 121701288 121701288 G T PTPRZ1 3'UTR 0.25 TCGA-EW-A1J6-01 7 131848966 131848966 C T PLXNA4 Missense_Mutation p.G1479S 0.37 tolerated(0.26) probably_damaging(1) TCGA-EW-A1J6-01 7 73279928 73279928 G T WBSCR28 Missense_Mutation p.V175L 0.39 tolerated(0.15) possibly_damaging(0.621) TCGA-EW-A1J6-01 7 94540068 94540068 C A PPP1R9A Missense_Mutation p.P215T 0.41 tolerated(0.43) benign(0.015) TCGA-EW-A1J6-01 8 53569852 53569852 T C RB1CC1 Missense_Mutation p.N846S 0.34 tolerated_low_confidence(0.27) benign(0.006) TCGA-EW-A1J6-01 9 115200812 115200812 A T HSDL2 Nonsense_Mutation p.K234* 0.38 TCGA-EW-A1J6-01 9 115567232 115567232 T C SNX30 Silent p.Y111Y 0.75 TCGA-EW-A1J6-01 9 35095509 35095509 G A PIGO Silent p.Y18Y 0.30 TCGA-EW-A1J6-01 9 37441075 37441075 G C ZBTB5 Missense_Mutation p.Q492E 0.33 tolerated_low_confidence(0.19) benign(0.201) TCGA-EW-A1OV-01 10 116068228 116068228 C A AFAP1L2 Missense_Mutation p.V311L 0.59 tolerated(0.15) benign(0.01) TCGA-EW-A1OV-01 10 121335263 121335263 G A TIAL1 Nonsense_Mutation p.Q365* 0.14 TCGA-EW-A1OV-01 10 134523866 134523866 C T INPP5A Missense_Mutation p.L185F 0.36 deleterious(0) possibly_damaging(0.518) TCGA-EW-A1OV-01 10 15120464 15120464 C G ACBD7 3'UTR 0.15 TCGA-EW-A1OV-01 10 17142117 17142117 G C CUBN Missense_Mutation p.S551C 0.47 deleterious(0.01) probably_damaging(0.976) TCGA-EW-A1OV-01 10 28250550 28250550 C A ARMC4 Missense_Mutation p.A445S 0.39 tolerated(0.31) benign(0.025) TCGA-EW-A1OV-01 10 65326043 65326139 AGCTGTTTAAAACATTGTTGTGTTTGAACAGTATTCTCATTTTTTTTACTTTTAGGCTGGTGTTTGGAATGCTTTATCCTGCATATTATTCATACAA - REEP3 Splice_Site p.X11_splice 0.19 TCGA-EW-A1OV-01 10 70960164 70960164 C T SUPV3L1 Missense_Mutation p.S476L 0.59 deleterious(0) benign(0.311) TCGA-EW-A1OV-01 10 89717752 89717752 C - PTEN Frame_Shift_Del p.H259Qfs*7 0.49 TCGA-EW-A1OV-01 11 106681104 106681104 C T GUCY1A2 Missense_Mutation p.R436Q 0.16 deleterious(0.02) possibly_damaging(0.742) TCGA-EW-A1OV-01 11 116657763 116657763 C T ZNF259 Missense_Mutation p.E116K 0.26 deleterious(0.02) benign(0.188) TCGA-EW-A1OV-01 11 117859104 117859104 G A IL10RA Silent p.E25E 0.44 TCGA-EW-A1OV-01 11 47440369 47440369 G C PSMC3 3'UTR 0.33 TCGA-EW-A1OV-01 11 58125608 58125608 G C OR5B17 Nonsense_Mutation p.S312* 0.14 TCGA-EW-A1OV-01 11 62298165 62298165 C T AHNAK Missense_Mutation p.D1242N 0.07 benign(0.421) TCGA-EW-A1OV-01 11 64054186 64054186 G C GPR137 Missense_Mutation p.A122P 0.36 deleterious(0.03) probably_damaging(0.921) TCGA-EW-A1OV-01 11 71806247 71806247 G A LRTOMT Intron 0.29 TCGA-EW-A1OV-01 11 92592421 92592421 G A FAT3 Missense_Mutation p.R3864H 0.28 probably_damaging(0.999) TCGA-EW-A1OV-01 11 94318664 94318664 C T PIWIL4 Missense_Mutation p.S230L 0.08 deleterious(0.03) benign(0.027) TCGA-EW-A1OV-01 11 94603937 94603937 G C AMOTL1 Missense_Mutation p.E950Q 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-EW-A1OV-01 12 108620851 108620851 G A WSCD2 Missense_Mutation p.E297K 0.22 tolerated(0.11) probably_damaging(0.988) TCGA-EW-A1OV-01 12 117696209 117696209 C G NOS1 Missense_Mutation p.E842Q 0.12 tolerated(0.1) probably_damaging(0.93) TCGA-EW-A1OV-01 12 29474809 29474809 G A FAR2 Silent p.T403T 0.23 TCGA-EW-A1OV-01 12 30816522 30816522 C T IPO8 Missense_Mutation p.V499I 0.12 tolerated(0.27) benign(0.105) TCGA-EW-A1OV-01 12 38710776 38710776 C T ALG10B Silent p.F27F 0.06 TCGA-EW-A1OV-01 12 41966376 41966376 G A PDZRN4 Missense_Mutation p.E599K 0.23 deleterious(0.04) possibly_damaging(0.687) TCGA-EW-A1OV-01 12 45803149 45803149 G A ANO6 Missense_Mutation p.M651I 0.11 tolerated(0.39) benign(0.102) TCGA-EW-A1OV-01 12 4919465 4919465 C T KCNA6 Silent p.F86F 0.17 TCGA-EW-A1OV-01 12 50749200 50749200 G C FAM186A Missense_Mutation p.S472C 0.13 deleterious(0) probably_damaging(0.923) TCGA-EW-A1OV-01 12 55688858 55688858 G C OR6C6 Silent p.L53L 0.26 TCGA-EW-A1OV-01 14 73945314 73945314 G C HEATR4 Silent p.L1026L 0.26 TCGA-EW-A1OV-01 14 89153606 89153606 G T EML5 Silent p.L936L 0.27 TCGA-EW-A1OV-01 14 94467638 94467638 C T LINC00521 RNA 0.18 TCGA-EW-A1OV-01 15 56387862 56387862 C T RFX7 Silent p.Q688Q 0.10 TCGA-EW-A1OV-01 15 65627716 65627716 G A IGDCC3 Nonsense_Mutation p.R200* 0.46 TCGA-EW-A1OV-01 15 67496430 67496430 C G AAGAB Missense_Mutation p.D258H 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-EW-A1OV-01 16 18865076 18865076 G A SMG1 Nonsense_Mutation p.Q1533* 0.12 TCGA-EW-A1OV-01 16 2580796 2580796 C T CEMP1 Silent p.L93L 0.20 TCGA-EW-A1OV-01 16 31500538 31500538 C T SLC5A2 Missense_Mutation p.S515L 0.14 deleterious(0) probably_damaging(0.998) TCGA-EW-A1OV-01 16 4247812 4247812 G A SRL Nonsense_Mutation p.Q122* 0.32 TCGA-EW-A1OV-01 16 4812753 4812753 G A ZNF500 Missense_Mutation p.S140L 0.21 tolerated(0.78) benign(0.001) TCGA-EW-A1OV-01 16 50765754 50765754 C T NOD2 3'UTR 0.33 TCGA-EW-A1OV-01 16 67235311 67235311 G A ELMO3 Silent p.Q309Q 0.11 TCGA-EW-A1OV-01 16 67861265 67861265 C G TSNAXIP1 Nonsense_Mutation p.S539* 0.25 TCGA-EW-A1OV-01 17 17248215 17248215 C T NT5M Silent p.D179D 0.42 TCGA-EW-A1OV-01 17 37590562 37590562 A G MED1 Missense_Mutation p.F147S 0.31 deleterious(0) probably_damaging(0.996) TCGA-EW-A1OV-01 17 44067389 44067389 C T MAPT Missense_Mutation p.S443F 0.10 deleterious(0) probably_damaging(0.973) TCGA-EW-A1OV-01 17 6676441 6676441 C T XAF1 Missense_Mutation p.R287W 0.17 tolerated(0.05) benign(0) TCGA-EW-A1OV-01 18 54423815 54423815 G C WDR7 Missense_Mutation p.G664A 0.20 tolerated(0.12) benign(0.288) TCGA-EW-A1OV-01 19 10106254 10106254 G C COL5A3 Missense_Mutation p.R525G 0.27 unknown(0) TCGA-EW-A1OV-01 19 10672340 10672340 C T KRI1 Intron 0.12 TCGA-EW-A1OV-01 19 22157511 22157511 C G ZNF208 Missense_Mutation p.E109Q 0.17 tolerated(0.26) possibly_damaging(0.69) TCGA-EW-A1OV-01 19 30936548 30936548 C T ZNF536 Silent p.N693N 0.25 TCGA-EW-A1OV-01 19 38160105 38160105 G A ZNF781 Silent p.V315V 0.08 TCGA-EW-A1OV-01 19 42911446 42911446 C T LIPE Missense_Mutation p.E673K 0.14 tolerated(0.05) probably_damaging(0.955) TCGA-EW-A1OV-01 19 50216736 50216736 C G CPT1C Missense_Mutation p.F762L 0.38 tolerated(0.13) probably_damaging(0.986) TCGA-EW-A1OV-01 19 52942307 52942307 C A ZNF534 Missense_Mutation p.R545S 0.28 tolerated(1) benign(0.003) TCGA-EW-A1OV-01 19 6731093 6731093 G A GPR108 Silent p.F488F 0.29 TCGA-EW-A1OV-01 1 110255990 110255990 C T GSTM5 Intron 0.30 TCGA-EW-A1OV-01 1 152280830 152280830 C T FLG Missense_Mutation p.D2178N 0.14 possibly_damaging(0.539) TCGA-EW-A1OV-01 1 156280435 156280435 C T CCT3 Missense_Mutation p.E483K 0.12 tolerated(0.47) benign(0.063) TCGA-EW-A1OV-01 1 158517323 158517323 G C OR6Y1 Missense_Mutation p.N191K 0.11 tolerated(0.56) probably_damaging(0.963) TCGA-EW-A1OV-01 1 17083838 17083838 C A MST1L RNA 0.13 TCGA-EW-A1OV-01 1 206972245 206972245 C A IL19 Nonsense_Mutation p.C2* 0.29 TCGA-EW-A1OV-01 1 212141942 212141942 C T INTS7 Silent p.L641L 0.26 TCGA-EW-A1OV-01 1 229773010 229773010 A C URB2 Missense_Mutation p.I884L 0.25 tolerated(0.17) benign(0.044) TCGA-EW-A1OV-01 1 27939763 27939763 C T FGR Missense_Mutation p.E450K 0.37 deleterious(0) probably_damaging(1) TCGA-EW-A1OV-01 1 31769531 31769531 T A SNRNP40 Missense_Mutation p.E23V 0.21 deleterious(0) benign(0.405) TCGA-EW-A1OV-01 1 31769532 31769532 C G SNRNP40 Missense_Mutation p.E23Q 0.21 tolerated(0.13) benign(0.329) TCGA-EW-A1OV-01 1 51874002 51874002 G C EPS15 Missense_Mutation p.I426M 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-EW-A1OV-01 1 67138977 67138977 G A SGIP1 Missense_Mutation p.D192N 0.26 tolerated(0.34) benign(0.063) TCGA-EW-A1OV-01 1 75229688 75229688 C T TYW3 Missense_Mutation p.P224L 0.18 tolerated(0.12) benign(0.002) TCGA-EW-A1OV-01 1 75229738 75229738 G A TYW3 Missense_Mutation p.E241K 0.12 deleterious(0.01) possibly_damaging(0.524) TCGA-EW-A1OV-01 1 85624392 85624392 G A SYDE2 3'UTR 0.17 TCGA-EW-A1OV-01 20 2451343 2451343 G A SNRPB 5'UTR 0.17 TCGA-EW-A1OV-01 21 35468377 35468377 C T SLC5A3 Missense_Mutation p.H294Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-EW-A1OV-01 22 17983944 17983944 G A CECR2 Missense_Mutation p.V215I 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-EW-A1OV-01 22 25147426 25147426 C T PIWIL3 Nonsense_Mutation p.W339* 0.25 TCGA-EW-A1OV-01 22 41257383 41257383 C T DNAJB7 Missense_Mutation p.E206K 0.23 deleterious(0.02) benign(0.15) TCGA-EW-A1OV-01 2 109380048 109380048 C G RANBP2 Missense_Mutation p.S1018C 0.20 deleterious(0.01) benign(0.073) TCGA-EW-A1OV-01 2 136594469 136594469 G A LCT Silent p.L91L 0.10 TCGA-EW-A1OV-01 2 174130809 174130809 G A MLTK Silent p.R578R 0.23 TCGA-EW-A1OV-01 2 179495587 179495587 C T TTN Missense_Mutation p.E14700K 0.22 TCGA-EW-A1OV-01 2 219000457 219000457 C T CXCR2 Silent p.P311P 0.17 TCGA-EW-A1OV-01 2 26410420 26410420 C G GAREML Nonsense_Mutation p.S640* 0.16 TCGA-EW-A1OV-01 2 74901797 74901797 C T SEMA4F Missense_Mutation p.S332F 0.29 deleterious(0.02) benign(0.062) TCGA-EW-A1OV-01 2 84881858 84881858 G A DNAH6 Silent p.L1903L 0.07 TCGA-EW-A1OV-01 2 96542220 96542220 C G ANKRD36C Missense_Mutation p.K196N 0.17 tolerated(0.06) benign(0.002) TCGA-EW-A1OV-01 3 108724021 108724021 C G MORC1 Missense_Mutation p.E637Q 0.30 deleterious(0.02) possibly_damaging(0.494) TCGA-EW-A1OV-01 3 111835691 111835691 C T C3orf52 Missense_Mutation p.S200L 0.26 unknown(0) TCGA-EW-A1OV-01 3 122835135 122835135 G A PDIA5 Missense_Mutation p.R200Q 0.40 deleterious(0) possibly_damaging(0.7) TCGA-EW-A1OV-01 3 156395730 156395730 G A TIPARP Missense_Mutation p.E82K 0.11 tolerated_low_confidence(0.71) benign(0.013) TCGA-EW-A1OV-01 3 172070865 172070865 C A FNDC3B Silent p.T929T 0.32 TCGA-EW-A1OV-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.12 deleterious(0) probably_damaging(1) TCGA-EW-A1OV-01 3 184298586 184298586 G A EPHB3 Missense_Mutation p.D820N 0.21 deleterious(0) probably_damaging(1) TCGA-EW-A1OV-01 3 187386848 187386848 G A SST 3'UTR 0.30 TCGA-EW-A1OV-01 3 35724361 35724361 C T ARPP21 Nonsense_Mutation p.Q51* 0.35 TCGA-EW-A1OV-01 3 44955293 44955293 G A TGM4 3'UTR 0.27 TCGA-EW-A1OV-01 3 49896707 49896707 C A CAMKV 3'UTR 0.21 TCGA-EW-A1OV-01 3 50391063 50391063 C T CYB561D2 Missense_Mutation p.S186F 0.36 tolerated(0.1) benign(0.185) TCGA-EW-A1OV-01 4 185612860 185612860 C T PRIMPOL Silent p.F473F 0.20 TCGA-EW-A1OV-01 4 41748265 41748265 C T PHOX2B Silent p.K168K 0.27 TCGA-EW-A1OV-01 4 68355813 68355813 G A CENPC Nonsense_Mutation p.Q848* 0.21 TCGA-EW-A1OV-01 5 138145810 138145810 C T CTNNA1 Nonsense_Mutation p.R129* 0.38 TCGA-EW-A1OV-01 5 140579848 140579848 A G PCDHB11 Silent p.V167V 0.23 TCGA-EW-A1OV-01 5 37243112 37243112 C T C5orf42 Intron 0.09 TCGA-EW-A1OV-01 6 131247796 131247796 G C EPB41L2 Silent p.L253L 0.18 TCGA-EW-A1OV-01 6 139241412 139241412 C T REPS1 Missense_Mutation p.D490N 0.20 deleterious(0.02) possibly_damaging(0.709) TCGA-EW-A1OV-01 6 168462627 168462627 G A FRMD1 Missense_Mutation p.P302L 0.57 tolerated(0.09) possibly_damaging(0.728) TCGA-EW-A1OV-01 6 26124000 26124000 C G HIST1H2BC Missense_Mutation p.V45L 0.28 deleterious_low_confidence(0.02) benign(0.042) TCGA-EW-A1OV-01 6 31711774 31711774 C T MSH5 Missense_Mutation p.S170F 0.23 deleterious(0) possibly_damaging(0.877) TCGA-EW-A1OV-01 6 74528116 74528116 C T CD109 Missense_Mutation p.S1306L 0.33 tolerated(1) benign(0) TCGA-EW-A1OV-01 7 100648336 100648336 C G MUC12 Nonsense_Mutation p.S4831* 0.20 TCGA-EW-A1OV-01 7 1024666 1024666 C T CYP2W1 Missense_Mutation p.R140W 0.26 deleterious(0) probably_damaging(0.954) TCGA-EW-A1OV-01 7 127732195 127732195 G C SND1 3'UTR 0.30 TCGA-EW-A1OV-01 7 139754548 139754548 G A PARP12 Missense_Mutation p.S259L 0.10 tolerated(0.18) benign(0.009) TCGA-EW-A1OV-01 7 4277291 4277291 C T SDK1 Missense_Mutation p.A2002V 0.21 tolerated(0.25) benign(0.066) TCGA-EW-A1OV-01 7 5338962 5338962 C T SLC29A4 Silent p.F371F 0.19 TCGA-EW-A1OV-01 7 63538756 63538756 G C ZNF727 Missense_Mutation p.K443N 0.17 deleterious(0.02) benign(0.086) TCGA-EW-A1OV-01 7 73280136 73280136 C T WBSCR28 Missense_Mutation p.S244L 0.19 tolerated(0.23) benign(0.001) TCGA-EW-A1OV-01 7 84670056 84670056 C G SEMA3D Missense_Mutation p.D327H 0.09 deleterious(0) probably_damaging(1) TCGA-EW-A1OV-01 8 105405211 105405211 G C DPYS Nonsense_Mutation p.S415* 0.14 TCGA-EW-A1OV-01 8 108334172 108334172 G C ANGPT1 Missense_Mutation p.L254V 0.08 deleterious(0.01) benign(0.038) TCGA-EW-A1OV-01 8 110447418 110447418 G C PKHD1L1 Splice_Site p.X1114_splice 0.12 TCGA-EW-A1OV-01 8 110598367 110598367 G A SYBU Missense_Mutation p.S151L 0.24 deleterious(0) probably_damaging(0.909) TCGA-EW-A1OV-01 8 141415792 141415792 G A TRAPPC9 Missense_Mutation p.L396F 0.18 deleterious(0.04) probably_damaging(0.994) TCGA-EW-A1OV-01 8 145947971 145947971 G A ZNF251 Silent p.F358F 0.23 TCGA-EW-A1OV-01 8 33356711 33356711 C T TTI2 Missense_Mutation p.A503T 0.06 tolerated_low_confidence(0.58) benign(0.001) TCGA-EW-A1OV-01 8 67484784 67484784 C T MYBL1 Missense_Mutation p.R554K 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-EW-A1OV-01 8 72756000 72756000 G T MSC Silent p.P138P 0.27 TCGA-EW-A1OV-01 9 125621108 125621108 C T RC3H2 Missense_Mutation p.R708Q 0.28 deleterious(0.02) probably_damaging(0.945) TCGA-EW-A1OV-01 9 79792653 79792653 G A VPS13A Silent p.L11L 0.17 TCGA-EW-A1OV-01 9 96870160 96870160 A T PTPDC1 Missense_Mutation p.K785N 0.29 tolerated(0.19) benign(0.02) TCGA-EW-A1OV-01 X 117576527 117576527 G C WDR44 Splice_Site p.X757_splice 0.09 TCGA-EW-A1OV-01 X 14861741 14861741 G A FANCB Missense_Mutation p.A843V 0.22 tolerated(0.08) benign(0.187) TCGA-EW-A1OV-01 X 148628334 148628334 C G CXorf40A Silent p.P101P 0.26 TCGA-EW-A1OV-01 X 151092751 151092751 C T MAGEA4 Silent p.I205I 0.11 TCGA-EW-A1OV-01 X 152089276 152089276 C A ZNF185 Missense_Mutation p.P213T 0.11 deleterious(0.01) possibly_damaging(0.786) TCGA-EW-A1OV-01 X 154493495 154493495 G A RAB39B Missense_Mutation p.R27C 0.23 tolerated(0.15) probably_damaging(0.996) TCGA-EW-A1OV-01 X 16635328 16635331 TAAG - CTPS2 Frame_Shift_Del p.D496Efs*4 0.27 TCGA-EW-A1OV-01 X 70776923 70776923 G A OGT Missense_Mutation p.D430N 0.19 deleterious(0) possibly_damaging(0.567) TCGA-EW-A1OV-01 X 73962009 73962009 C T KIAA2022 Missense_Mutation p.E795K 0.18 deleterious(0.01) possibly_damaging(0.571) TCGA-EW-A1OV-01 X 73964065 73964065 C T KIAA2022 Silent p.L109L 0.11 TCGA-EW-A1OX-01 10 79567580 79567580 G A DLG5 Silent p.G1590G 0.50 TCGA-EW-A1OX-01 10 8115984 8115985 TA AAC GATA3 Frame_Shift_Ins p.*445N 0.18 TCGA-EW-A1OX-01 11 1266710 1266710 T A MUC5B Missense_Mutation p.V2867E 0.54 unknown(0) TCGA-EW-A1OX-01 11 2428524 2428524 C T TRPM5 Silent p.T981T 0.38 TCGA-EW-A1OX-01 12 48468348 48468348 T A SENP1 Silent p.S233S 0.43 TCGA-EW-A1OX-01 12 58013981 58013981 C A SLC26A10 5'UTR 0.26 TCGA-EW-A1OX-01 12 91502360 91502360 C G LUM Missense_Mutation p.G133R 0.33 tolerated(0.37) benign(0.258) TCGA-EW-A1OX-01 17 10406521 10406521 T A MYH1 Silent p.L912L 0.20 TCGA-EW-A1OX-01 17 61611456 61611456 T C KCNH6 Silent p.Y295Y 0.12 TCGA-EW-A1OX-01 19 16186899 16186899 A C TPM4 Missense_Mutation p.T53P 0.44 tolerated(0.07) benign(0.363) TCGA-EW-A1OX-01 19 53960766 53960766 C T ZNF761 RNA 0.64 TCGA-EW-A1OX-01 19 55699505 55699505 C T PTPRH Missense_Mutation p.A806T 0.40 possibly_damaging(0.621) TCGA-EW-A1OX-01 1 167367331 167367331 G C POU2F1 Missense_Mutation p.E410D 0.08 tolerated(0.08) unknown(0) TCGA-EW-A1OX-01 1 235336038 235336038 G C ARID4B Missense_Mutation p.L1236V 0.23 deleterious(0) probably_damaging(0.99) TCGA-EW-A1OX-01 20 9523320 9523320 G A PAK7 Silent p.G639G 0.41 TCGA-EW-A1OX-01 21 38095375 38095375 C T SIM2 Nonsense_Mutation p.R163* 0.40 TCGA-EW-A1OX-01 2 166850700 166850700 C G SCN1A Missense_Mutation p.G1603A 0.39 tolerated(0.11) probably_damaging(0.993) TCGA-EW-A1OX-01 2 99448832 99448832 C T KIAA1211L Silent p.V173V 0.64 TCGA-EW-A1OX-01 3 114012875 114012875 A T TIGIT 5'UTR 0.45 TCGA-EW-A1OX-01 6 144269336 144269336 C T PLAGL1 5'UTR 0.43 TCGA-EW-A1OX-01 7 8791227 8791227 C T NXPH1 Missense_Mutation p.S215L 0.60 deleterious(0.01) probably_damaging(0.949) TCGA-EW-A1OX-01 X 106456141 106456141 G A PIH1D3 Silent p.K12K 0.38 TCGA-EW-A1OZ-01 10 15120422 15120422 A T ACBD7 3'UTR 0.12 TCGA-EW-A1OZ-01 10 63852793 63852793 C G ARID5B 3'UTR 0.05 TCGA-EW-A1OZ-01 10 75557625 75557625 C T ZSWIM8 Missense_Mutation p.A1250V 0.13 deleterious(0) probably_damaging(0.996) TCGA-EW-A1OZ-01 10 79784451 79784451 C T POLR3A Silent p.K167K 0.17 TCGA-EW-A1OZ-01 10 97917426 97917426 G A ZNF518A RNA 0.15 TCGA-EW-A1OZ-01 10 98408467 98408467 G A PIK3AP1 Silent p.I378I 0.27 TCGA-EW-A1OZ-01 11 117302396 117302396 C T DSCAML1 Missense_Mutation p.R1803Q 0.24 deleterious(0.04) benign(0.345) TCGA-EW-A1OZ-01 11 294635 294635 G - ATHL1 Frame_Shift_Del p.E700Dfs*66 0.37 TCGA-EW-A1OZ-01 11 44289064 44289064 G A ALX4 Nonsense_Mutation p.R296* 0.17 TCGA-EW-A1OZ-01 11 46398099 46398099 G A DGKZ Silent p.R917R 0.38 TCGA-EW-A1OZ-01 11 47735870 47735870 C T AGBL2 Missense_Mutation p.M21I 0.71 tolerated_low_confidence(0.07) benign(0.071) TCGA-EW-A1OZ-01 11 66113438 66113438 C T B3GNT1 3'UTR 0.56 TCGA-EW-A1OZ-01 12 2675590 2675590 G A CACNA1C Missense_Mutation p.R504H 0.27 deleterious(0.01) possibly_damaging(0.839) TCGA-EW-A1OZ-01 12 42491739 42491739 A C GXYLT1 Missense_Mutation p.L321V 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-EW-A1OZ-01 14 20692025 20692025 T C OR11H6 Missense_Mutation p.Y53H 0.10 deleterious(0) possibly_damaging(0.557) TCGA-EW-A1OZ-01 14 57268782 57268782 G A OTX2 Nonsense_Mutation p.Q189* 0.16 TCGA-EW-A1OZ-01 15 74836663 74836663 G A ARID3B Missense_Mutation p.R129H 0.12 tolerated(0.79) benign(0.004) TCGA-EW-A1OZ-01 16 3434862 3434862 G C ZSCAN32 Silent p.L65L 0.17 TCGA-EW-A1OZ-01 17 18007161 18007161 G A DRG2 Missense_Mutation p.E285K 0.13 tolerated(0.16) benign(0.015) TCGA-EW-A1OZ-01 17 18046135 18046135 G A MYO15A Missense_Mutation p.S1964N 0.16 unknown(0) TCGA-EW-A1OZ-01 17 25633924 25633924 C T WSB1 Intron 0.13 TCGA-EW-A1OZ-01 17 25637155 25637155 C A WSB1 Missense_Mutation p.S318Y 0.11 tolerated(0.13) possibly_damaging(0.876) TCGA-EW-A1OZ-01 17 3458079 3458079 G A TRPV3 Silent p.N22N 0.83 TCGA-EW-A1OZ-01 17 56811651 56811651 G C RAD51C 3'UTR 0.20 TCGA-EW-A1OZ-01 17 7320448 7320448 C T NLGN2 Missense_Mutation p.T613M 0.31 tolerated(0.19) benign(0.353) TCGA-EW-A1OZ-01 17 7577509 7577509 C A TP53 Nonsense_Mutation p.E258* 0.73 TCGA-EW-A1OZ-01 17 78210729 78210729 C T SLC26A11 Missense_Mutation p.R247C 0.18 deleterious(0) probably_damaging(0.999) TCGA-EW-A1OZ-01 18 6942214 6942214 C T LAMA1 Missense_Mutation p.R3031H 0.16 deleterious(0.01) benign(0.333) TCGA-EW-A1OZ-01 19 11537373 11537373 C G CCDC151 Missense_Mutation p.E245Q 0.15 tolerated(0.39) benign(0.196) TCGA-EW-A1OZ-01 19 40366247 40366247 C G FCGBP Missense_Mutation p.G4663R 0.36 possibly_damaging(0.498) TCGA-EW-A1OZ-01 19 43709633 43709633 A C PSG4 Missense_Mutation p.L19R 0.24 deleterious(0) probably_damaging(0.998) TCGA-EW-A1OZ-01 19 4659991 4659991 T G C19orf10 Missense_Mutation p.S132R 0.17 tolerated(0.09) possibly_damaging(0.816) TCGA-EW-A1OZ-01 19 48018149 48018149 C A NAPA Missense_Mutation p.A17S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1OZ-01 19 50060466 50060466 T G NOSIP Missense_Mutation p.K100T 0.38 tolerated(0.31) benign(0.005) TCGA-EW-A1OZ-01 19 52909856 52909856 C T ZNF528 Silent p.N77N 0.18 TCGA-EW-A1OZ-01 19 53209818 53209818 G C ZNF611 Missense_Mutation p.L164V 0.19 tolerated(0.06) probably_damaging(0.978) TCGA-EW-A1OZ-01 19 55877456 55877456 G A IL11 Silent p.A173A 0.33 TCGA-EW-A1OZ-01 19 8152732 8152732 C T FBN3 Missense_Mutation p.R2199Q 0.38 tolerated(0.07) probably_damaging(0.985) TCGA-EW-A1OZ-01 19 9449894 9449894 C A ZNF559 Missense_Mutation p.A20D 0.09 deleterious(0) benign(0.117) TCGA-EW-A1OZ-01 1 120927132 120927132 C T FCGR1B 3'UTR 0.20 TCGA-EW-A1OZ-01 1 13507 13507 G A DDX11L1 RNA 0.15 TCGA-EW-A1OZ-01 1 150778411 150778411 G A CTSK Missense_Mutation p.P109S 0.12 tolerated(0.46) benign(0.003) TCGA-EW-A1OZ-01 1 32120447 32120447 T C COL16A1 Missense_Mutation p.N1435D 0.20 possibly_damaging(0.468) TCGA-EW-A1OZ-01 1 45101365 45101365 C A RNF220 Intron 0.27 TCGA-EW-A1OZ-01 1 52911474 52911474 G A ZCCHC11 Silent p.L1269L 0.26 TCGA-EW-A1OZ-01 1 55349418 55349418 T G DHCR24 Missense_Mutation p.K87T 0.38 tolerated(0.06) possibly_damaging(0.703) TCGA-EW-A1OZ-01 20 44673645 44673645 C G SLC12A5 Missense_Mutation p.L502V 0.15 deleterious(0.05) possibly_damaging(0.728) TCGA-EW-A1OZ-01 20 57570749 57570749 G C CTSZ Missense_Mutation p.N289K 0.17 deleterious(0) probably_damaging(0.983) TCGA-EW-A1OZ-01 20 62163955 62163955 G A PTK6 Silent p.A252A 0.38 TCGA-EW-A1OZ-01 21 34399211 34399211 C T OLIG2 Missense_Mutation p.S14L 0.21 deleterious(0) possibly_damaging(0.823) TCGA-EW-A1OZ-01 21 46032163 46032163 G A KRTAP10-8 Missense_Mutation p.S49N 0.11 deleterious(0) possibly_damaging(0.72) TCGA-EW-A1OZ-01 22 31731814 31731814 C T PATZ1 Silent p.L457L 0.50 TCGA-EW-A1OZ-01 2 102632478 102632478 C T IL1R2 Missense_Mutation p.R160C 0.40 tolerated(0.06) probably_damaging(0.922) TCGA-EW-A1OZ-01 2 153515699 153515699 G A PRPF40A Missense_Mutation p.S805L 0.27 deleterious(0) unknown(0) TCGA-EW-A1OZ-01 2 211456677 211456677 A G CPS1 Missense_Mutation p.N363S 0.23 deleterious(0) probably_damaging(0.999) TCGA-EW-A1OZ-01 2 219142384 219142384 T C TMBIM1 Missense_Mutation p.M175V 0.55 deleterious(0) benign(0.142) TCGA-EW-A1OZ-01 2 233759478 233759478 G T NGEF Missense_Mutation p.A326D 0.33 tolerated(0.98) possibly_damaging(0.646) TCGA-EW-A1OZ-01 2 239233967 239233967 C A TRAF3IP1 Missense_Mutation p.F48L 0.18 deleterious(0) benign(0.269) TCGA-EW-A1OZ-01 2 25861883 25861883 G A DTNB Missense_Mutation p.L50F 0.18 deleterious(0.02) benign(0.301) TCGA-EW-A1OZ-01 3 179322623 179322623 T G NDUFB5 Missense_Mutation p.L7W 0.10 deleterious(0) probably_damaging(0.989) TCGA-EW-A1OZ-01 3 185155302 185155302 G A MAP3K13 Silent p.A181A 0.12 TCGA-EW-A1OZ-01 3 35786037 35786037 T C ARPP21 Intron 0.19 TCGA-EW-A1OZ-01 4 183721007 183721007 G A TENM3 Missense_Mutation p.E2535K 0.36 tolerated(0.09) benign(0.007) TCGA-EW-A1OZ-01 5 140256674 140256674 C T PCDHA12 Silent p.D539D 0.15 TCGA-EW-A1OZ-01 5 157106864 157106864 A G C5orf52 Missense_Mutation p.K113E 0.21 tolerated(0.06) possibly_damaging(0.801) TCGA-EW-A1OZ-01 6 10756932 10756932 G A TMEM14B 3'UTR 0.44 TCGA-EW-A1OZ-01 6 43167709 43167709 A G CUL9 Missense_Mutation p.M1067V 0.62 tolerated(0.72) benign(0.003) TCGA-EW-A1OZ-01 7 100350499 100350499 C T ZAN Missense_Mutation p.T924M 0.62 unknown(0) TCGA-EW-A1OZ-01 7 151810418 151810418 G A GALNT11 Missense_Mutation p.E390K 0.18 tolerated(0.4) benign(0.075) TCGA-EW-A1OZ-01 7 158109540 158109540 C T PTPRN2 Missense_Mutation p.R83H 0.53 deleterious(0.01) possibly_damaging(0.548) TCGA-EW-A1OZ-01 7 31117712 31117713 AG T ADCYAP1R1 Frame_Shift_Del p.Q88Hfs*19 0.19 TCGA-EW-A1OZ-01 7 89854679 89854679 A G STEAP2 Missense_Mutation p.R95G 0.06 deleterious(0.01) possibly_damaging(0.86) TCGA-EW-A1OZ-01 8 124042882 124042882 T C DERL1 Silent p.L76L 0.61 TCGA-EW-A1OZ-01 8 42977873 42977873 C T POMK Silent p.V302V 0.21 TCGA-EW-A1OZ-01 8 87229924 87229924 G T SLC7A13 Missense_Mutation p.S318R 0.15 deleterious(0.02) probably_damaging(0.974) TCGA-EW-A1OZ-01 9 119460255 119460255 C G TRIM32 Missense_Mutation p.D78E 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-EW-A1OZ-01 9 32635412 32635412 C T TAF1L Missense_Mutation p.V56I 0.09 tolerated(0.54) benign(0.032) TCGA-EW-A1OZ-01 X 138825729 138825729 C T ATP11C Missense_Mutation p.V1010I 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-EW-A1P0-01 11 92507304 92507304 G C FAT3 Missense_Mutation p.M1431I 0.33 benign(0.15) TCGA-EW-A1P0-01 12 126068521 126068521 C T TMEM132B Missense_Mutation p.A468V 0.06 tolerated(0.1) possibly_damaging(0.547) TCGA-EW-A1P0-01 12 133351864 133351864 G C GOLGA3 Missense_Mutation p.Q1336E 0.31 deleterious(0.01) benign(0.209) TCGA-EW-A1P0-01 12 18837138 18837138 A G PLCZ1 Missense_Mutation p.V556A 0.47 deleterious(0.02) benign(0.308) TCGA-EW-A1P0-01 12 27832871 27832871 G C PPFIBP1 Missense_Mutation p.R597T 0.50 deleterious(0.01) possibly_damaging(0.884) TCGA-EW-A1P0-01 13 24242970 24242970 C A TNFRSF19 Missense_Mutation p.P327T 0.21 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-EW-A1P0-01 14 96157602 96157602 C A TCL1B Intron 0.38 TCGA-EW-A1P0-01 17 38282588 38282588 G A MSL1 Silent p.E44E 0.46 TCGA-EW-A1P0-01 17 46148872 46148872 T A CBX1 Silent p.I161I 0.19 TCGA-EW-A1P0-01 17 57650594 57650594 A - DHX40 Frame_Shift_Del p.T182Qfs*8 0.29 TCGA-EW-A1P0-01 17 79427683 79427683 C T RP11-1055B8.7 Silent p.P2051P 0.38 TCGA-EW-A1P0-01 19 12788175 12788175 G A DHPS Silent p.D238D 0.50 TCGA-EW-A1P0-01 1 145112423 145112423 A C SEC22B RNA 0.08 TCGA-EW-A1P0-01 1 153947113 153947113 A C JTB 3'UTR 0.14 TCGA-EW-A1P0-01 1 161495248 161495248 C A HSPA6 Missense_Mutation p.T267K 0.17 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-EW-A1P0-01 1 203455841 203455841 C T PRELP Silent p.N327N 0.10 TCGA-EW-A1P0-01 20 3785317 3785317 C A CDC25B Missense_Mutation p.P531H 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-EW-A1P0-01 22 46932208 46932208 A G CELSR1 Missense_Mutation p.L287P 0.21 deleterious(0.02) benign(0.261) TCGA-EW-A1P0-01 2 179550299 179550299 C A TTN Missense_Mutation p.V10780L 0.42 TCGA-EW-A1P0-01 2 73653617 73653617 C A ALMS1 Missense_Mutation p.T425N 0.46 possibly_damaging(0.826) TCGA-EW-A1P0-01 2 74595859 74595859 C T DCTN1 Missense_Mutation p.C617Y 0.39 tolerated(0.08) possibly_damaging(0.883) TCGA-EW-A1P0-01 3 130095411 130095411 G A COL6A5 Silent p.Q133Q 0.34 TCGA-EW-A1P0-01 3 178948044 178948044 A G PIK3CA Missense_Mutation p.D939G 0.50 tolerated(0.83) benign(0.027) TCGA-EW-A1P0-01 4 88767390 88767390 C T MEPE Missense_Mutation p.P457L 0.30 tolerated(0.11) benign(0.085) TCGA-EW-A1P0-01 5 140580709 140580709 C T PCDHB11 Silent p.T454T 0.50 TCGA-EW-A1P0-01 6 109483990 109483990 G T CEP57L1 Missense_Mutation p.M400I 0.71 tolerated(0.27) benign(0.002) TCGA-EW-A1P0-01 8 110412471 110412471 T A PKHD1L1 Missense_Mutation p.S393R 0.75 tolerated(0.37) probably_damaging(0.989) TCGA-EW-A1P0-01 X 114141530 114141530 C T HTR2C Missense_Mutation p.S310L 0.68 deleterious(0) benign(0.029) TCGA-EW-A1P0-01 X 131348321 131348321 T C RAP2C Missense_Mutation p.M143V 0.62 tolerated(0.25) benign(0.001) TCGA-EW-A1P1-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.10 tolerated(0.13) possibly_damaging(0.631) TCGA-EW-A1P1-01 20 44637587 44637587 G T MMP9 Missense_Mutation p.V8F 0.09 tolerated(0.13) benign(0.029) TCGA-EW-A1P1-01 7 98951670 98951670 T G ARPC1A Silent p.S213S 0.08 TCGA-EW-A1P3-01 10 8115725 8115728 GAAG - GATA3 Frame_Shift_Del p.E360Afs*44 0.45 TCGA-EW-A1P3-01 11 126136761 126136761 G A SRPR Missense_Mutation p.P195S 0.24 tolerated(0.21) benign(0.002) TCGA-EW-A1P3-01 11 609319 609319 C G PHRF1 Missense_Mutation p.S1287W 0.27 deleterious(0) probably_damaging(0.966) TCGA-EW-A1P3-01 11 76076991 76076991 T C PRKRIR Missense_Mutation p.R39G 0.07 deleterious(0.04) benign(0.001) TCGA-EW-A1P3-01 12 102158972 102158972 C T GNPTAB Missense_Mutation p.G575R 0.09 tolerated(0.14) possibly_damaging(0.822) TCGA-EW-A1P3-01 14 92343923 92343923 T C FBLN5 Missense_Mutation p.I365V 0.23 tolerated(0.21) benign(0.029) TCGA-EW-A1P3-01 15 22928474 22928474 T A CYFIP1 Silent p.P117P 0.17 TCGA-EW-A1P3-01 16 67116116 67116116 C T CBFB Nonsense_Mutation p.Q134* 0.27 TCGA-EW-A1P3-01 16 80646646 80646646 C A CDYL2 Silent p.L365L 0.38 TCGA-EW-A1P3-01 19 1269861 1269861 T C CIRBP Intron 0.26 TCGA-EW-A1P3-01 19 13427968 13427968 T C CACNA1A Missense_Mutation p.I505V 0.20 benign(0.274) TCGA-EW-A1P3-01 19 16003198 16003198 C T CYP4F2 Missense_Mutation p.R149Q 0.21 deleterious(0.02) benign(0.323) TCGA-EW-A1P3-01 19 30054758 30054758 G A VSTM2B Missense_Mutation p.G259S 0.30 tolerated(0.24) possibly_damaging(0.862) TCGA-EW-A1P3-01 1 150620787 150620787 C A GOLPH3L 3'UTR 0.39 TCGA-EW-A1P3-01 1 17345315 17345315 A G SDHB 3'UTR 0.14 TCGA-EW-A1P3-01 1 5967185 5967185 G A NPHP4 Missense_Mutation p.P534L 0.32 tolerated(0.09) benign(0.002) TCGA-EW-A1P3-01 2 158272428 158272428 C T CYTIP Missense_Mutation p.D281N 0.25 tolerated(0.07) possibly_damaging(0.735) TCGA-EW-A1P3-01 2 202131411 202131411 C T CASP8 Nonsense_Mutation p.R127* 0.11 TCGA-EW-A1P3-01 3 33406169 33406169 T G FBXL2 Missense_Mutation p.L83R 0.20 deleterious(0) probably_damaging(0.999) TCGA-EW-A1P3-01 4 26622298 26622298 G A TBC1D19 Missense_Mutation p.M94I 0.22 tolerated(0.36) benign(0.019) TCGA-EW-A1P3-01 4 47462286 47462286 C T COMMD8 Missense_Mutation p.G33S 0.05 tolerated(0.05) probably_damaging(0.914) TCGA-EW-A1P3-01 4 56435960 56435960 G A PDCL2 Missense_Mutation p.S96F 0.04 deleterious(0) probably_damaging(0.934) TCGA-EW-A1P3-01 5 137226171 137226171 G A PKD2L2 Silent p.G11G 0.26 TCGA-EW-A1P3-01 5 149576771 149576771 C T SLC6A7 Silent p.S172S 0.31 TCGA-EW-A1P3-01 5 176868294 176868294 G A GRK6 Intron 0.20 TCGA-EW-A1P3-01 6 151670260 151670260 G A AKAP12 Missense_Mutation p.R245H 0.18 tolerated(0.2) benign(0.001) TCGA-EW-A1P3-01 6 38867558 38867558 C T DNAH8 Nonsense_Mutation p.R2807* 0.20 TCGA-EW-A1P3-01 6 56458463 56458464 - A DST Frame_Shift_Ins p.K1619* 0.29 TCGA-EW-A1P3-01 8 88885982 88885982 C T DCAF4L2 Missense_Mutation p.R73Q 0.05 tolerated(0.4) benign(0.009) TCGA-EW-A1P3-01 9 130579557 130579557 C G ENG Intron 0.41 TCGA-EW-A1P4-01 10 104130498 104130498 G C GBF1 Missense_Mutation p.D1180H 0.11 deleterious(0.03) probably_damaging(0.96) TCGA-EW-A1P4-01 10 123997024 123997024 G C TACC2 Missense_Mutation p.D2748H 0.27 probably_damaging(0.999) TCGA-EW-A1P4-01 10 134463965 134463965 C T INPP5A Nonsense_Mutation p.R88* 0.26 TCGA-EW-A1P4-01 10 15161504 15161504 C G NMT2 Missense_Mutation p.K336N 0.31 tolerated(0.08) possibly_damaging(0.675) TCGA-EW-A1P4-01 10 28378743 28378743 C G MPP7 Missense_Mutation p.S327T 0.31 deleterious(0.05) possibly_damaging(0.82) TCGA-EW-A1P4-01 10 37419187 37419187 G A ANKRD30A Missense_Mutation p.D75N 0.33 tolerated(0.07) benign(0.24) TCGA-EW-A1P4-01 10 73494028 73494028 G A CDH23 Missense_Mutation p.R1384H 0.50 deleterious(0.01) possibly_damaging(0.898) TCGA-EW-A1P4-01 10 79778932 79778932 G T POLR3A Missense_Mutation p.T426K 0.36 tolerated(0.49) benign(0.237) TCGA-EW-A1P4-01 11 103114423 103114423 G A DYNC2H1 Missense_Mutation p.S3281N 0.20 possibly_damaging(0.469) TCGA-EW-A1P4-01 11 2432879 2432879 C T TRPM5 Missense_Mutation p.V865M 0.10 deleterious(0) possibly_damaging(0.596) TCGA-EW-A1P4-01 11 32954935 32954935 A C QSER1 Missense_Mutation p.T582P 0.13 tolerated(0.22) benign(0.004) TCGA-EW-A1P4-01 11 58978942 58978942 A T MPEG1 Missense_Mutation p.V466E 0.09 deleterious(0.01) benign(0.1) TCGA-EW-A1P4-01 11 64393940 64393953 TCGAGCAGCCACTC - NRXN2 Frame_Shift_Del p.E1277Qfs*53 0.54 TCGA-EW-A1P4-01 12 31576559 31576559 C G DENND5B Missense_Mutation p.E814D 0.27 tolerated(0.11) benign(0.159) TCGA-EW-A1P4-01 12 57493104 57493104 C A STAT6 Missense_Mutation p.D622Y 0.22 deleterious(0) probably_damaging(0.981) TCGA-EW-A1P4-01 14 24724436 24724436 C G TGM1 Missense_Mutation p.V557L 0.39 tolerated(0.49) probably_damaging(0.99) TCGA-EW-A1P4-01 14 36207803 36207803 G A RALGAPA1 Silent p.N501N 0.27 TCGA-EW-A1P4-01 15 51773279 51773279 T C DMXL2 Silent p.K2008K 0.60 TCGA-EW-A1P4-01 15 62211583 62211583 C G VPS13C Missense_Mutation p.V2515L 0.47 deleterious(0) benign(0.391) TCGA-EW-A1P4-01 15 64791782 64791782 A G ZNF609 Missense_Mutation p.K55R 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-EW-A1P4-01 15 93588678 93588678 G A RGMA Silent p.V309V 0.15 TCGA-EW-A1P4-01 16 11361748 11361748 G A TNP2 3'UTR 0.35 TCGA-EW-A1P4-01 16 20373852 20373852 C G PDILT Missense_Mutation p.L430F 0.16 deleterious(0) probably_damaging(0.971) TCGA-EW-A1P4-01 16 24950912 24950912 A C ARHGAP17 Silent p.G499G 0.28 TCGA-EW-A1P4-01 16 4924574 4924574 T G UBN1 Silent p.P721P 0.36 TCGA-EW-A1P4-01 16 50813677 50813677 A C CYLD Missense_Mutation p.N414H 0.06 deleterious(0.02) probably_damaging(0.938) TCGA-EW-A1P4-01 16 53725984 53725984 T - RPGRIP1L Frame_Shift_Del p.R175Gfs*4 0.63 TCGA-EW-A1P4-01 16 55909072 55909072 G A CES5A Intron 0.22 TCGA-EW-A1P4-01 16 89256775 89256775 A C CDH15 Missense_Mutation p.D368A 0.56 deleterious(0) probably_damaging(0.96) TCGA-EW-A1P4-01 17 39262243 39262243 C A KRTAP4-9 Silent p.R201R 0.31 TCGA-EW-A1P4-01 17 39724412 39724412 A G KRT9 Splice_Site p.X465_splice 0.47 TCGA-EW-A1P4-01 17 41004614 41004614 G A AOC3 Silent p.E418E 0.36 TCGA-EW-A1P4-01 17 67190077 67190077 T C ABCA10 Missense_Mutation p.I467V 0.28 tolerated(0.16) benign(0.268) TCGA-EW-A1P4-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.59 deleterious(0) probably_damaging(1) TCGA-EW-A1P4-01 18 43422081 43422081 C T SIGLEC15 Nonsense_Mutation p.Q306* 0.23 TCGA-EW-A1P4-01 18 72109184 72109184 T A FAM69C Intron 0.16 TCGA-EW-A1P4-01 19 11486428 11486428 G C SWSAP1 Missense_Mutation p.Q142H 0.14 deleterious(0.01) possibly_damaging(0.866) TCGA-EW-A1P4-01 19 17948829 17948829 C T JAK3 Missense_Mutation p.G538D 0.23 deleterious(0.01) probably_damaging(1) TCGA-EW-A1P4-01 19 33321429 33321429 G C SLC7A9 3'UTR 0.15 TCGA-EW-A1P4-01 19 34712628 34712628 G A LSM14A Silent p.A451A 0.60 TCGA-EW-A1P4-01 19 37006039 37006039 T C ZNF260 Silent p.K34K 0.17 TCGA-EW-A1P4-01 19 43097961 43098002 AAGAACCTCCTTCCCCTCTGCAGCATTGGATGGCACAGCTTC - CEACAM8 In_Frame_Del p.E39_L52del 0.80 TCGA-EW-A1P4-01 19 51217448 51217448 C A SHANK1 Missense_Mutation p.D211Y 0.74 probably_damaging(0.942) TCGA-EW-A1P4-01 1 171519354 171519354 G C PRRC2C Missense_Mutation p.R1699P 0.14 unknown(0) TCGA-EW-A1P4-01 1 175097249 175097249 G A TNN Missense_Mutation p.A1043T 0.55 deleterious(0) probably_damaging(1) TCGA-EW-A1P4-01 1 176012377 176012377 A T RFWD2 Silent p.V519V 0.22 TCGA-EW-A1P4-01 1 230398319 230398319 A G GALNT2 Silent p.R379R 0.43 TCGA-EW-A1P4-01 1 233518092 233518092 C T MLK4 Missense_Mutation p.P916S 0.14 tolerated(0.1) probably_damaging(0.972) TCGA-EW-A1P4-01 1 237753140 237753140 A G RYR2 Missense_Mutation p.N1216D 0.30 benign(0.062) TCGA-EW-A1P4-01 1 244006542 244006549 CTCTGCTG - AKT3 5'UTR 0.31 TCGA-EW-A1P4-01 1 33116171 33116171 C A ZBTB8OS 5'UTR 0.28 TCGA-EW-A1P4-01 1 86959277 86959277 G T CLCA1 Missense_Mutation p.A559S 0.26 deleterious(0) probably_damaging(1) TCGA-EW-A1P4-01 20 14307452 14307452 C T FLRT3 Missense_Mutation p.R234Q 0.38 deleterious(0) probably_damaging(1) TCGA-EW-A1P4-01 20 3733413 3733413 G C HSPA12B 3'UTR 0.43 TCGA-EW-A1P4-01 21 19716378 19716378 C T TMPRSS15 Splice_Site p.X391_splice 0.29 TCGA-EW-A1P4-01 22 32352686 32352686 T C YWHAH Silent p.Y216Y 0.35 TCGA-EW-A1P4-01 22 38506578 38506578 G A BAIAP2L2 5'UTR 0.24 TCGA-EW-A1P4-01 2 113676172 113676172 A G IL37 Missense_Mutation p.E148G 0.24 tolerated(0.12) benign(0.211) TCGA-EW-A1P4-01 2 234378033 234378033 A T DGKD Missense_Mutation p.K1191M 0.34 deleterious(0) probably_damaging(0.998) TCGA-EW-A1P4-01 2 234526969 234526969 A G UGT1A8 Missense_Mutation p.R206G 0.25 deleterious(0) probably_damaging(0.992) TCGA-EW-A1P4-01 2 234871945 234871945 G A TRPM8 Missense_Mutation p.R558Q 0.21 tolerated(0.45) possibly_damaging(0.656) TCGA-EW-A1P4-01 2 85529633 85529633 C A TCF7L1 Missense_Mutation p.H184Q 0.21 tolerated(0.44) possibly_damaging(0.87) TCGA-EW-A1P4-01 3 130447357 130447357 T C PIK3R4 Missense_Mutation p.N586S 0.53 deleterious(0.05) benign(0.109) TCGA-EW-A1P4-01 3 135870742 135870742 T A MSL2 Silent p.S327S 0.57 TCGA-EW-A1P4-01 3 142753807 142753807 A G U2SURP Missense_Mutation p.E644G 0.31 deleterious(0) probably_damaging(0.986) TCGA-EW-A1P4-01 3 14520055 14520055 T C SLC6A6 Missense_Mutation p.F477L 0.10 tolerated(0.38) benign(0.005) TCGA-EW-A1P4-01 3 46245442 46245442 G T CCR1 Silent p.I121I 0.46 TCGA-EW-A1P4-01 4 2341251 2341251 C G ZFYVE28 Silent p.L150L 0.31 TCGA-EW-A1P4-01 4 48115241 48115241 A G TXK Silent p.L53L 0.21 TCGA-EW-A1P4-01 5 180048050 180048050 G C FLT4 Intron 0.57 TCGA-EW-A1P4-01 5 39127855 39127855 T A FYB Missense_Mutation p.D642V 0.30 deleterious(0) possibly_damaging(0.475) TCGA-EW-A1P4-01 5 96430625 96430625 G C LIX1 Missense_Mutation p.R226G 0.50 tolerated(0.18) benign(0.092) TCGA-EW-A1P4-01 6 33541467 33541467 T G BAK1 3'UTR 0.25 TCGA-EW-A1P4-01 6 44328305 44328305 C T SPATS1 Missense_Mutation p.T137M 0.34 deleterious(0) probably_damaging(0.991) TCGA-EW-A1P4-01 7 82585015 82585015 T G PCLO Missense_Mutation p.S1752R 0.13 unknown(0) TCGA-EW-A1P4-01 7 92926136 92926136 A G CCDC132 Missense_Mutation p.D417G 0.26 tolerated(0.31) probably_damaging(0.948) TCGA-EW-A1P4-01 8 113933928 113933928 C T CSMD3 Missense_Mutation p.A521T 0.16 deleterious(0.01) benign(0.15) TCGA-EW-A1P4-01 8 144991532 144991532 A G PLEC Missense_Mutation p.S4290P 0.40 probably_damaging(0.994) TCGA-EW-A1P4-01 9 139341757 139341757 G A SEC16A Missense_Mutation p.P2207S 0.62 tolerated(0.14) possibly_damaging(0.487) TCGA-EW-A1P4-01 9 140943768 140943768 G C CACNA1B Splice_Site p.X1237_splice 0.55 TCGA-EW-A1P4-01 X 153224852 153224852 G A HCFC1 Missense_Mutation p.A512V 0.13 tolerated(0.07) probably_damaging(0.986) TCGA-EW-A1P5-01 10 123844285 123844285 C T TACC2 Missense_Mutation p.T757M 0.33 possibly_damaging(0.54) TCGA-EW-A1P5-01 11 17518353 17518353 A C USH1C Missense_Mutation p.I833S 0.26 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-EW-A1P5-01 11 4703421 4703421 G A OR51E2 Missense_Mutation p.S174L 0.43 tolerated(0.1) possibly_damaging(0.542) TCGA-EW-A1P5-01 12 12788868 12788868 G T CREBL2 Missense_Mutation p.R58L 0.42 deleterious(0) possibly_damaging(0.885) TCGA-EW-A1P5-01 12 4874615 4874615 G A GALNT8 Missense_Mutation p.R555H 0.16 tolerated(0.17) benign(0.027) TCGA-EW-A1P5-01 15 35178825 35178825 C A AQR Nonsense_Mutation p.E907* 0.05 TCGA-EW-A1P5-01 15 54542602 54542602 C T UNC13C Silent p.H1136H 0.39 TCGA-EW-A1P5-01 17 25752519 25752519 C T TBC1D3P5 RNA 0.15 TCGA-EW-A1P5-01 19 54314050 54314050 C T NLRP12 Missense_Mutation p.R288H 0.20 deleterious(0.02) benign(0.391) TCGA-EW-A1P5-01 1 109814957 109814957 T C CELSR2 Missense_Mutation p.S2662P 0.64 deleterious(0.01) probably_damaging(0.987) TCGA-EW-A1P5-01 2 1926290 1926290 C T MYT1L Silent p.S417S 0.44 TCGA-EW-A1P5-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.60 deleterious(0) probably_damaging(0.96) TCGA-EW-A1P5-01 2 30457271 30457271 C T LBH Silent p.C9C 0.25 TCGA-EW-A1P5-01 3 178928060 178928086 GCCAGTACCTCATGGATTAGAAGATTT - PIK3CA In_Frame_Del p.P447_L455del 0.59 TCGA-EW-A1P5-01 3 35833914 35833914 C A ARPP21 Silent p.G692G 0.30 TCGA-EW-A1P5-01 3 52404645 52404645 C A DNAH1 Missense_Mutation p.N2137K 0.37 benign(0.001) TCGA-EW-A1P5-01 7 131189049 131189049 G A PODXL 3'UTR 0.50 TCGA-EW-A1P5-01 7 31013744 31013744 G A GHRHR Missense_Mutation p.A248T 0.60 tolerated(0.1) probably_damaging(0.962) TCGA-EW-A1P5-01 8 39695678 39695678 G A ADAM2 Silent p.S9S 0.13 TCGA-EW-A1P5-01 X 132887946 132887946 G A GPC3 Nonsense_Mutation p.R199* 0.20 TCGA-EW-A1P5-01 X 151900138 151900138 G C MAGEA12 Missense_Mutation p.I221M 0.10 tolerated(0.1) possibly_damaging(0.88) TCGA-EW-A1P6-01 11 117860257 117860257 C T IL10RA Missense_Mutation p.R97W 0.35 tolerated(0.24) benign(0.314) TCGA-EW-A1P6-01 14 104641403 104641403 C T KIF26A Missense_Mutation p.R760C 0.50 deleterious(0) probably_damaging(0.995) TCGA-EW-A1P6-01 15 44158472 44158472 G T WDR76 Missense_Mutation p.G588V 0.23 tolerated(0.5) benign(0.063) TCGA-EW-A1P6-01 16 27523076 27523076 C T GTF3C1 Missense_Mutation p.D374N 0.11 deleterious(0.04) benign(0.167) TCGA-EW-A1P6-01 17 49270817 49270817 A G MBTD1 Missense_Mutation p.I476T 0.31 tolerated(0.53) benign(0.005) TCGA-EW-A1P6-01 18 2707824 2707827 ACTG - SMCHD1 Frame_Shift_Del p.L723Ifs*67 0.21 TCGA-EW-A1P6-01 19 39905892 39905892 A T PLEKHG2 Missense_Mutation p.I124F 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EW-A1P6-01 19 42848602 42848602 G A MEGF8 Missense_Mutation p.A600T 0.47 tolerated(0.76) benign(0.142) TCGA-EW-A1P6-01 19 51647763 51647763 G A SIGLEC7 Silent p.T178T 0.33 TCGA-EW-A1P6-01 1 100177672 100177672 C T FRRS1 Missense_Mutation p.R490K 0.29 tolerated(0.31) probably_damaging(0.916) TCGA-EW-A1P6-01 1 152331367 152331367 G T FLG2 5'UTR 0.39 TCGA-EW-A1P6-01 20 44441996 44441996 G A UBE2C Intron 0.42 TCGA-EW-A1P6-01 2 207170549 207170549 G A ZDBF2 Missense_Mutation p.E433K 0.26 tolerated(0.11) benign(0) TCGA-EW-A1P6-01 2 36740755 36740755 G A CRIM1 Missense_Mutation p.G613S 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EW-A1P6-01 3 109031471 109031471 G A DPPA2 Silent p.D34D 0.29 TCGA-EW-A1P6-01 3 156396272 156396272 T A TIPARP Silent p.T262T 0.22 TCGA-EW-A1P6-01 3 193174859 193174859 C T ATP13A4 Missense_Mutation p.M615I 0.52 tolerated(0.52) benign(0.001) TCGA-EW-A1P6-01 3 4774809 4774809 A G ITPR1 Missense_Mutation p.Y1738C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-EW-A1P6-01 3 57326108 57326108 A G ASB14 5'UTR 0.49 TCGA-EW-A1P6-01 4 108831835 108831835 C T SGMS2 3'UTR 0.33 TCGA-EW-A1P6-01 5 54405976 54405976 A G GZMA Missense_Mutation p.N252S 0.36 tolerated(0.7) benign(0) TCGA-EW-A1P6-01 5 56178143 56178144 - A MAP3K1 Frame_Shift_Ins p.D1040Rfs*2 0.35 TCGA-EW-A1P6-01 6 4056666 4056666 A G PRPF4B Missense_Mutation p.I860V 0.31 tolerated(0.06) unknown(0) TCGA-EW-A1P6-01 7 108155179 108155179 T C PNPLA8 Missense_Mutation p.I253V 0.40 tolerated(0.75) benign(0) TCGA-EW-A1P6-01 8 143998609 143998609 G A CYP11B2 Silent p.R87R 0.22 TCGA-EW-A1P6-01 9 108308787 108308787 C T FSD1L 3'UTR 0.11 TCGA-EW-A1P6-01 X 70389880 70389880 A C NLGN3 Missense_Mutation p.Y827S 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.772) TCGA-EW-A1P6-01 X 96684718 96684718 G A DIAPH2 Missense_Mutation p.R1072H 0.21 deleterious(0) probably_damaging(0.998) TCGA-EW-A1P7-01 11 108384254 108384257 CTTA GTTTT EXPH5 Frame_Shift_Ins p.N659Kfs*23 0.09 TCGA-EW-A1P7-01 12 3686131 3686131 G - PRMT8 Frame_Shift_Del p.T270Pfs*5 0.17 TCGA-EW-A1P7-01 15 49716548 49716548 C T FGF7 Silent p.C18C 0.06 TCGA-EW-A1P7-01 16 21170742 21170742 G C DNAH3 Silent p.L7L 0.13 TCGA-EW-A1P7-01 19 39108247 39108247 C G MAP4K1 Missense_Mutation p.G40R 0.09 deleterious(0.04) benign(0.057) TCGA-EW-A1P7-01 19 39293044 39293044 G A LGALS4 Missense_Mutation p.P191S 0.07 tolerated(0.25) benign(0.014) TCGA-EW-A1P7-01 19 40316721 40316721 T G DYRK1B Silent p.P508P 0.47 TCGA-EW-A1P7-01 1 156834219 156834219 C G NTRK1 Missense_Mutation p.L96V 0.10 deleterious(0) benign(0.265) TCGA-EW-A1P7-01 1 21546471 21546471 G A ECE1 Missense_Mutation p.P764S 0.09 tolerated(0.72) benign(0.003) TCGA-EW-A1P7-01 1 6158660 6158660 A T KCNAB2 3'UTR 0.09 TCGA-EW-A1P7-01 22 18604374 18604374 C G TUBA8 Missense_Mutation p.N44K 0.10 tolerated_low_confidence(0.36) benign(0.005) TCGA-EW-A1P7-01 22 36708158 36708160 TTG A MYH9 Frame_Shift_Del p.K555Vfs*12 0.11 TCGA-EW-A1P7-01 2 179635029 179635029 T A TTN Missense_Mutation p.K2800M 0.17 TCGA-EW-A1P7-01 3 180324055 180324055 T C TTC14 Missense_Mutation p.V315A 0.11 deleterious(0) probably_damaging(0.999) TCGA-EW-A1P7-01 6 26271321 26271321 C A HIST1H3G Nonsense_Mutation p.E98* 0.08 TCGA-EW-A1P7-01 7 72951703 72951703 T C BCL7B Silent p.E178E 0.12 TCGA-EW-A1P7-01 7 91972348 91972348 G T ANKIB1 Missense_Mutation p.R266S 0.14 tolerated(0.08) probably_damaging(0.954) TCGA-EW-A1P7-01 8 144733172 144733172 G A ZNF623 Missense_Mutation p.C377Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-EW-A1P7-01 9 34655661 34655661 G A IL11RA Missense_Mutation p.G54R 0.21 deleterious(0.03) benign(0.212) TCGA-EW-A1P7-01 9 66468857 66468857 C T RP11-262H14.1 RNA 0.16 TCGA-EW-A1P7-01 9 91977267 91977267 G A SECISBP2 3'Flank 0.09 TCGA-EW-A1P7-01 X 101770005 101770005 A - TMSB15A Frame_Shift_Del p.S31Qfs*45 0.14 TCGA-EW-A1P7-01 X 47434673 47434673 C A SYN1 Missense_Mutation p.V387L 0.12 deleterious(0) possibly_damaging(0.622) TCGA-EW-A1P8-01 10 115486182 115486182 C T CASP7 Missense_Mutation p.S257F 0.43 deleterious(0) probably_damaging(0.992) TCGA-EW-A1P8-01 11 123886542 123886542 C T OR10G4 Silent p.S87S 0.24 TCGA-EW-A1P8-01 11 123893980 123893980 C T OR10G9 Silent p.S87S 0.19 TCGA-EW-A1P8-01 11 44081434 44081434 G C ACCSL Missense_Mutation p.L557F 0.20 tolerated(0.59) benign(0.162) TCGA-EW-A1P8-01 11 76371884 76371884 C G LRRC32 Silent p.R251R 0.21 TCGA-EW-A1P8-01 12 26640139 26640139 A C ITPR2 Missense_Mutation p.F1806V 0.30 deleterious(0.01) probably_damaging(1) TCGA-EW-A1P8-01 12 6342590 6342590 C A CD9 Missense_Mutation p.L96I 0.55 deleterious(0.03) probably_damaging(0.936) TCGA-EW-A1P8-01 13 111121578 111121579 - GAGGAAGCCTT COL4A2 Frame_Shift_Ins p.I706Sfs*36 0.52 TCGA-EW-A1P8-01 13 46070345 46070345 G A COG3 Silent p.E462E 0.60 TCGA-EW-A1P8-01 14 24760122 24760122 C G DHRS1 Silent p.L295L 0.38 TCGA-EW-A1P8-01 14 31582337 31582337 A C HECTD1 Missense_Mutation p.I2041M 0.51 deleterious(0.05) possibly_damaging(0.806) TCGA-EW-A1P8-01 15 30848180 30848180 C T GOLGA8Q Nonsense_Mutation p.Q105* 0.50 TCGA-EW-A1P8-01 16 20387485 20387485 G A PDILT Nonsense_Mutation p.R150* 0.30 TCGA-EW-A1P8-01 17 42274624 42274624 G A ATXN7L3 Missense_Mutation p.R110W 0.52 deleterious(0) probably_damaging(0.995) TCGA-EW-A1P8-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.57 deleterious(0) probably_damaging(0.997) TCGA-EW-A1P8-01 18 8784556 8784556 G C SOGA2 Silent p.A482A 0.43 TCGA-EW-A1P8-01 19 15223187 15223187 C T SYDE1 Missense_Mutation p.R537C 0.32 deleterious(0.01) probably_damaging(0.932) TCGA-EW-A1P8-01 19 15223341 15223341 A G SYDE1 Missense_Mutation p.H588R 0.53 tolerated(1) benign(0) TCGA-EW-A1P8-01 1 120458147 120458147 G A NOTCH2 Nonsense_Mutation p.R2400* 0.32 TCGA-EW-A1P8-01 1 158224379 158224379 A G CD1A 5'UTR 0.35 TCGA-EW-A1P8-01 1 202862535 202862535 A G KLHL12 Missense_Mutation p.L471P 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-EW-A1P8-01 1 233394715 233394715 C G PCNXL2 Missense_Mutation p.R298P 0.18 tolerated_low_confidence(0.11) benign(0) TCGA-EW-A1P8-01 1 38323086 38323086 T A MTF1 Missense_Mutation p.H82L 0.25 tolerated(0.71) benign(0.05) TCGA-EW-A1P8-01 20 40049505 40049505 G A CHD6 Missense_Mutation p.P1924S 0.61 deleterious_low_confidence(0.04) benign(0.002) TCGA-EW-A1P8-01 20 47886966 47886966 G A ZNFX1 Silent p.F461F 0.55 TCGA-EW-A1P8-01 21 11047558 11047558 T A BAGE2 RNA 0.05 TCGA-EW-A1P8-01 21 40600483 40600484 CA - BRWD1 Frame_Shift_Del p.D1051Lfs*9 0.32 TCGA-EW-A1P8-01 22 35734720 35734720 C T TOM1 Missense_Mutation p.A388V 0.59 deleterious(0.01) benign(0.127) TCGA-EW-A1P8-01 2 103141572 103141572 G C SLC9A4 Missense_Mutation p.R636S 0.59 deleterious(0.01) benign(0.415) TCGA-EW-A1P8-01 2 85827041 85827041 C G TMEM150A Silent p.A123A 0.45 TCGA-EW-A1P8-01 2 89185360 89185360 C T IGKV4-1 Silent p.A18A 0.38 TCGA-EW-A1P8-01 2 96657310 96657311 - TTCA ANKRD36C Frame_Shift_Ins p.K49Nfs*10 0.50 TCGA-EW-A1P8-01 3 48677877 48677877 G C CELSR3 Nonsense_Mutation p.Y3047* 0.45 TCGA-EW-A1P8-01 5 112164629 112164629 G A APC Missense_Mutation p.S568N 0.55 possibly_damaging(0.805) TCGA-EW-A1P8-01 5 156022038 156022038 G T SGCD Missense_Mutation p.G160V 0.43 deleterious(0) probably_damaging(0.992) TCGA-EW-A1P8-01 6 44218045 44218045 G A HSP90AB1 Silent p.E222E 0.37 TCGA-EW-A1P8-01 6 96971168 96971168 G A UFL1 Splice_Site p.X75_splice 0.32 TCGA-EW-A1P8-01 7 100180051 100180051 G C LRCH4 Silent p.P84P 0.58 TCGA-EW-A1P8-01 7 6731888 6731888 C T ZNF12 Missense_Mutation p.D229N 0.30 tolerated(0.14) benign(0.002) TCGA-EW-A1P8-01 8 101271360 101271360 G C RNF19A Silent p.G647G 0.29 TCGA-EW-A1P8-01 X 107396925 107396925 G T ATG4A Nonsense_Mutation p.E394* 0.45 TCGA-EW-A1P8-01 X 141291033 141291033 C G MAGEC2 Missense_Mutation p.E247D 0.57 deleterious(0.03) possibly_damaging(0.615) TCGA-EW-A1PA-01 11 18195501 18195501 G T MRGPRX4 Missense_Mutation p.G233V 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-EW-A1PA-01 11 20676318 20676318 C G SLC6A5 Silent p.R766R 0.27 TCGA-EW-A1PA-01 11 55419087 55419087 C G OR4S2 Silent p.S236S 0.38 TCGA-EW-A1PA-01 11 55798211 55798211 C A OR5AS1 Missense_Mutation p.S106Y 0.14 tolerated(0.38) benign(0.003) TCGA-EW-A1PA-01 11 71212359 71212359 C T NADSYN1 Silent p.L694L 0.53 TCGA-EW-A1PA-01 12 11061465 11061465 G C TAS2R13 Missense_Mutation p.L145V 0.37 tolerated(0.56) possibly_damaging(0.479) TCGA-EW-A1PA-01 12 56532266 56532266 C T ESYT1 Missense_Mutation p.R816W 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1PA-01 12 57437051 57437051 C A MYO1A Missense_Mutation p.K328N 0.32 tolerated(0.14) benign(0.049) TCGA-EW-A1PA-01 13 77656125 77656125 G C MYCBP2 Missense_Mutation p.C3642W 0.29 probably_damaging(0.991) TCGA-EW-A1PA-01 14 106091344 106091345 - GACCACAC IGHG4 Frame_Shift_Ins p.S184Vfs*14 0.13 TCGA-EW-A1PA-01 14 75470300 75470300 A T EIF2B2 Nonsense_Mutation p.K111* 0.24 TCGA-EW-A1PA-01 15 65994128 65994128 T C DENND4A Missense_Mutation p.N844S 0.21 deleterious(0.04) probably_damaging(0.971) TCGA-EW-A1PA-01 16 30393112 30393112 C T SEPT1 Missense_Mutation p.G97S 0.28 probably_damaging(0.92) TCGA-EW-A1PA-01 16 90059193 90059193 G A AFG3L1P RNA 0.59 TCGA-EW-A1PA-01 17 16721379 16721379 C T AC022596.6 RNA 0.38 TCGA-EW-A1PA-01 17 74538648 74538648 C T PRCD Silent p.L53L 0.18 TCGA-EW-A1PA-01 17 7482828 7482831 AGAG - CD68 5'UTR 0.86 TCGA-EW-A1PA-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.44 TCGA-EW-A1PA-01 17 78831617 78831617 G T RPTOR Missense_Mutation p.V476L 0.17 deleterious(0.01) possibly_damaging(0.834) TCGA-EW-A1PA-01 19 10259657 10259657 C T DNMT1 Missense_Mutation p.D875N 0.38 tolerated(0.12) benign(0.029) TCGA-EW-A1PA-01 19 4538679 4538679 C G LRG1 Missense_Mutation p.S106T 0.18 tolerated(0.45) benign(0.002) TCGA-EW-A1PA-01 1 26448989 26448989 C G PDIK1L Missense_Mutation p.P316R 0.29 deleterious(0) probably_damaging(0.997) TCGA-EW-A1PA-01 1 46159681 46159681 T C TMEM69 3'UTR 0.40 TCGA-EW-A1PA-01 20 20023016 20023016 T A CRNKL1 Missense_Mutation p.I534F 0.40 deleterious(0.01) possibly_damaging(0.786) TCGA-EW-A1PA-01 20 41100907 41100907 G A PTPRT Silent p.D483D 0.24 TCGA-EW-A1PA-01 20 44330789 44330789 C T WFDC13 Silent p.F9F 0.11 TCGA-EW-A1PA-01 2 108604643 108604643 T G SLC5A7 Missense_Mutation p.I11S 0.29 deleterious(0) benign(0.168) TCGA-EW-A1PA-01 2 172411349 172411349 G A CYBRD1 3'UTR 0.39 TCGA-EW-A1PA-01 2 179478997 179478997 C T TTN Missense_Mutation p.R16376H 0.23 TCGA-EW-A1PA-01 2 43452474 43452474 C T ZFP36L2 Missense_Mutation p.E157K 0.31 deleterious(0) probably_damaging(0.974) TCGA-EW-A1PA-01 3 16358386 16358386 C T RFTN1 Silent p.R562R 0.27 TCGA-EW-A1PA-01 4 155161799 155161799 C T DCHS2 Missense_Mutation p.E1962K 0.20 tolerated(0.52) benign(0.024) TCGA-EW-A1PA-01 4 39865035 39865035 A T PDS5A Missense_Mutation p.I896K 0.17 deleterious(0) possibly_damaging(0.848) TCGA-EW-A1PA-01 4 40440362 40440362 G C RBM47 Silent p.V183V 0.60 TCGA-EW-A1PA-01 4 86893355 86893355 T C ARHGAP24 Intron 0.46 TCGA-EW-A1PA-01 5 23527272 23527272 A G PRDM9 Missense_Mutation p.Y692C 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-EW-A1PA-01 6 151151728 151151731 AGGA - PLEKHG1 Frame_Shift_Del p.E495Dfs*24 0.75 TCGA-EW-A1PA-01 7 151945363 151945363 C A KMT2C Missense_Mutation p.R719M 0.05 benign(0.019) TCGA-EW-A1PA-01 8 99961319 99961319 C G OSR2 Missense_Mutation p.Q47E 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.497) TCGA-EW-A1PA-01 9 135772703 135772703 T A TSC1 Missense_Mutation p.Y948F 0.30 tolerated(0.08) probably_damaging(0.927) TCGA-EW-A1PA-01 9 95077794 95077794 T C NOL8 Silent p.R371R 0.46 TCGA-EW-A1PA-01 X 105921404 105921404 C T CXorf57 Silent p.V828V 0.33 TCGA-EW-A1PA-01 X 149826404 149826404 G C MTM1 Missense_Mutation p.L388F 0.24 deleterious(0.04) probably_damaging(1) TCGA-EW-A1PA-01 X 50051515 50051515 G A CCNB3 Missense_Mutation p.E116K 0.24 tolerated(0.08) benign(0.031) TCGA-EW-A1PB-01 10 11998357 11998357 C A UPF2 Missense_Mutation p.V846L 0.09 tolerated(0.07) benign(0.07) TCGA-EW-A1PB-01 10 18807853 18807859 GCAAAAA - CACNB2 Frame_Shift_Del p.Q301Rfs*6 0.26 TCGA-EW-A1PB-01 10 21962594 21962594 C G MLLT10 Missense_Mutation p.S456C 0.25 tolerated(0.05) possibly_damaging(0.906) TCGA-EW-A1PB-01 10 81901933 81901933 G C PLAC9 Missense_Mutation p.E54Q 0.37 deleterious(0) possibly_damaging(0.859) TCGA-EW-A1PB-01 11 102206908 102206909 CT - BIRC3 Frame_Shift_Del p.L514Afs*4 0.16 TCGA-EW-A1PB-01 11 103907921 103907921 G A DDI1 Missense_Mutation p.R124Q 0.19 tolerated(1) benign(0.002) TCGA-EW-A1PB-01 11 1272209 1272209 C T MUC5B Missense_Mutation p.P4700L 0.30 unknown(0) TCGA-EW-A1PB-01 11 18434280 18434280 G C LDHC Missense_Mutation p.E6Q 0.16 tolerated(0.18) benign(0.137) TCGA-EW-A1PB-01 11 57099625 57099625 C A SSRP1 Splice_Site p.X334_splice 0.24 TCGA-EW-A1PB-01 11 60388574 60388574 G A LINC00301 RNA 0.12 TCGA-EW-A1PB-01 11 62558104 62558104 C G TMEM223 Silent p.R200R 0.23 TCGA-EW-A1PB-01 11 63970680 63970680 G C STIP1 Missense_Mutation p.D456H 0.17 deleterious(0) benign(0.141) TCGA-EW-A1PB-01 11 64803125 64803125 C A SNX15 Missense_Mutation p.F218L 0.30 tolerated(0.31) benign(0.414) TCGA-EW-A1PB-01 11 66082230 66082230 C G CD248 Missense_Mutation p.V757L 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EW-A1PB-01 11 66999259 66999259 G A KDM2A Missense_Mutation p.G436E 0.32 tolerated(0.96) benign(0.007) TCGA-EW-A1PB-01 11 840306 840306 C A POLR2L 3'UTR 0.19 TCGA-EW-A1PB-01 11 88961113 88961113 C T TYR Missense_Mutation p.L387F 0.29 deleterious(0.01) probably_damaging(0.911) TCGA-EW-A1PB-01 12 101699730 101699730 G A UTP20 Missense_Mutation p.D607N 0.43 deleterious(0.01) possibly_damaging(0.694) TCGA-EW-A1PB-01 12 101871392 101871392 G C SPIC Silent p.L20L 0.30 TCGA-EW-A1PB-01 12 104200107 104200107 C G NT5DC3 Missense_Mutation p.V173L 0.17 deleterious(0.01) possibly_damaging(0.78) TCGA-EW-A1PB-01 12 106729428 106729428 C T TCP11L2 Nonsense_Mutation p.Q262* 0.42 TCGA-EW-A1PB-01 12 124281372 124281372 G T DNAH10 Missense_Mutation p.G601V 0.25 benign(0.285) TCGA-EW-A1PB-01 12 1675832 1675832 C A FBXL14 3'UTR 0.64 TCGA-EW-A1PB-01 12 27916222 27916222 C T MANSC4 Missense_Mutation p.D158N 0.33 tolerated(0.15) benign(0.02) TCGA-EW-A1PB-01 12 30884374 30884374 T C CAPRIN2 Silent p.K321K 0.09 TCGA-EW-A1PB-01 12 54422706 54422709 GTGA - HOXC6 Splice_Site p.X134_splice 0.46 TCGA-EW-A1PB-01 12 9266108 9266108 G C A2M Missense_Mutation p.H40D 0.11 deleterious(0) possibly_damaging(0.563) TCGA-EW-A1PB-01 12 96288897 96288897 G C CCDC38 Silent p.L214L 0.37 TCGA-EW-A1PB-01 13 101777015 101777015 G A NALCN Silent p.F712F 0.22 TCGA-EW-A1PB-01 13 103281891 103281891 G A TPP2 Missense_Mutation p.S359N 0.14 deleterious(0) probably_damaging(0.917) TCGA-EW-A1PB-01 14 22192149 22192149 C A TRAV3 Missense_Mutation p.P5H 0.20 tolerated(0.54) benign(0.002) TCGA-EW-A1PB-01 14 35253131 35253131 C T BAZ1A Missense_Mutation p.E612K 0.35 deleterious(0.01) possibly_damaging(0.899) TCGA-EW-A1PB-01 14 93118024 93118024 C G RIN3 Silent p.L210L 0.29 TCGA-EW-A1PB-01 15 37184576 37184592 TGGGGAGGAGTGTAACT - MEIS2 Frame_Shift_Del p.S406Dfs*69 0.38 TCGA-EW-A1PB-01 15 41624735 41624735 G C OIP5 Missense_Mutation p.R9G 0.26 tolerated_low_confidence(0.4) benign(0.003) TCGA-EW-A1PB-01 15 53908000 53908000 G A WDR72 Silent p.C801C 0.43 TCGA-EW-A1PB-01 15 75131064 75131064 G A ULK3 Missense_Mutation p.A341V 0.45 deleterious(0) probably_damaging(1) TCGA-EW-A1PB-01 15 83523419 83523419 C T HOMER2 Missense_Mutation p.E221K 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-EW-A1PB-01 15 91561082 91561082 C G VPS33B Missense_Mutation p.D44H 0.17 deleterious(0.02) possibly_damaging(0.881) TCGA-EW-A1PB-01 16 51175790 51175790 C G SALL1 Missense_Mutation p.E115Q 0.34 deleterious(0.01) benign(0.193) TCGA-EW-A1PB-01 16 67325347 67325347 G C KCTD19 Missense_Mutation p.F810L 0.40 tolerated(0.25) benign(0.009) TCGA-EW-A1PB-01 16 68382280 68382280 C G PRMT7 Missense_Mutation p.N453K 0.38 tolerated(1) benign(0.001) TCGA-EW-A1PB-01 16 77317689 77317689 G C ADAMTS18 3'UTR 0.39 TCGA-EW-A1PB-01 17 15522583 15522583 C T CDRT1 Missense_Mutation p.G82R 0.35 deleterious(0) probably_damaging(0.994) TCGA-EW-A1PB-01 17 72308231 72308231 G A DNAI2 Silent p.R528R 0.28 TCGA-EW-A1PB-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.39 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PB-01 17 76047128 76047128 G A TNRC6C Missense_Mutation p.G662D 0.38 deleterious(0.03) benign(0.127) TCGA-EW-A1PB-01 17 9764490 9764490 C T GLP2R Silent p.F320F 0.20 TCGA-EW-A1PB-01 18 20581659 20581659 G C RBBP8 Missense_Mutation p.E752Q 0.20 deleterious(0.02) benign(0.282) TCGA-EW-A1PB-01 18 30092770 30092778 CTGACTCCT - WBP11P1 RNA 0.37 TCGA-EW-A1PB-01 18 31325407 31325407 C T ASXL3 Silent p.I1865I 0.15 TCGA-EW-A1PB-01 18 44125353 44125353 C G LOXHD1 Missense_Mutation p.K71N 0.23 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PB-01 18 47311649 47311649 C T ACAA2 Missense_Mutation p.V343M 0.28 deleterious(0.05) benign(0.2) TCGA-EW-A1PB-01 18 9257247 9257247 G T ANKRD12 Nonsense_Mutation p.E1328* 0.21 TCGA-EW-A1PB-01 19 10795141 10795141 G C ILF3 Intron 0.30 TCGA-EW-A1PB-01 19 13870017 13870017 C T CCDC130 Silent p.H168H 0.44 TCGA-EW-A1PB-01 19 15342092 15342092 C G EPHX3 Missense_Mutation p.D149H 0.15 deleterious(0) probably_damaging(0.987) TCGA-EW-A1PB-01 19 15350784 15350784 C G BRD4 Missense_Mutation p.M1073I 0.27 benign(0.001) TCGA-EW-A1PB-01 19 22363099 22363099 C G ZNF676 Missense_Mutation p.E474Q 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-EW-A1PB-01 19 33602732 33602732 C A GPATCH1 Nonsense_Mutation p.S563* 0.25 TCGA-EW-A1PB-01 19 39734335 39734335 G A IFNL3 Silent p.F176F 0.25 TCGA-EW-A1PB-01 19 4157065 4157065 C T CREB3L3 Missense_Mutation p.S77F 0.31 deleterious(0) probably_damaging(0.997) TCGA-EW-A1PB-01 19 4254420 4254420 C T CCDC94 Silent p.L113L 0.28 TCGA-EW-A1PB-01 19 45494525 45494525 C G CLPTM1 Silent p.L483L 0.36 TCGA-EW-A1PB-01 19 4770765 4770765 G A MIR7-3 RNA 0.24 TCGA-EW-A1PB-01 19 47996232 47996232 C G NAPA Missense_Mutation p.D183H 0.39 deleterious(0.04) benign(0.012) TCGA-EW-A1PB-01 19 48653045 48653045 G C LIG1 Missense_Mutation p.P251A 0.41 tolerated(0.25) benign(0.001) TCGA-EW-A1PB-01 19 54848304 54848304 G A LILRA4 Silent p.L355L 0.30 TCGA-EW-A1PB-01 19 56370171 56370171 A T NLRP4 Missense_Mutation p.D471V 0.31 deleterious(0.03) benign(0.271) TCGA-EW-A1PB-01 19 7547069 7547069 G T PEX11G Missense_Mutation p.S93Y 0.35 deleterious(0) probably_damaging(0.947) TCGA-EW-A1PB-01 1 109743374 109743374 C G KIAA1324 Missense_Mutation p.S942C 0.27 deleterious(0.02) probably_damaging(1) TCGA-EW-A1PB-01 1 112329593 112329593 C G KCND3 Missense_Mutation p.Q414H 0.26 deleterious(0.03) benign(0.216) TCGA-EW-A1PB-01 1 149783921 149783921 G C HIST2H2BF 5'UTR 0.15 TCGA-EW-A1PB-01 1 152659669 152659669 C A LCE2B 3'UTR 0.32 TCGA-EW-A1PB-01 1 154473950 154473950 C T SHE Missense_Mutation p.E185K 0.28 deleterious(0.04) benign(0.155) TCGA-EW-A1PB-01 1 156915883 156915883 G A ARHGEF11 Silent p.L922L 0.28 TCGA-EW-A1PB-01 1 159023322 159023322 G A IFI16 Splice_Site p.X640_splice 0.08 TCGA-EW-A1PB-01 1 159505696 159505696 G C OR10J5 Silent p.V34V 0.20 TCGA-EW-A1PB-01 1 160000705 160000705 G C PIGM Missense_Mutation p.F275L 0.30 deleterious(0) probably_damaging(1) TCGA-EW-A1PB-01 1 212965126 212965126 G A TATDN3 5'Flank 0.15 TCGA-EW-A1PB-01 1 221509249 221509249 G C RP11-421L10.1 RNA 0.28 TCGA-EW-A1PB-01 1 227842649 227842649 G C ZNF678 Missense_Mutation p.G233A 0.14 deleterious(0.02) possibly_damaging(0.721) TCGA-EW-A1PB-01 1 230827287 230827287 G C COG2 Missense_Mutation p.D698H 0.11 deleterious(0) probably_damaging(1) TCGA-EW-A1PB-01 1 43296767 43296767 C A ERMAP Silent p.T138T 0.22 TCGA-EW-A1PB-01 1 43917293 43917293 G A SZT2 3'UTR 0.31 TCGA-EW-A1PB-01 1 78395103 78395103 G C NEXN Missense_Mutation p.E323Q 0.22 deleterious(0.02) benign(0.375) TCGA-EW-A1PB-01 20 33104223 33104223 C G DYNLRB1 5'UTR 0.26 TCGA-EW-A1PB-01 20 33568430 33568430 C A MYH7B Missense_Mutation p.P173Q 0.12 probably_damaging(1) TCGA-EW-A1PB-01 20 36642081 36642081 C G TTI1 Missense_Mutation p.Q46H 0.08 deleterious(0) probably_damaging(0.987) TCGA-EW-A1PB-01 20 44429777 44429777 T A DNTTIP1 Missense_Mutation p.I146K 0.20 tolerated(0.68) benign(0.206) TCGA-EW-A1PB-01 20 47309237 47309237 C A PREX1 Nonsense_Mutation p.E337* 0.34 TCGA-EW-A1PB-01 20 61522371 61522371 A C DIDO1 Missense_Mutation p.L1161R 0.27 probably_damaging(1) TCGA-EW-A1PB-01 20 61982113 61982113 G C CHRNA4 Missense_Mutation p.T217S 0.23 tolerated(0.41) benign(0.064) TCGA-EW-A1PB-01 20 62616368 62616368 A C PRPF6 Missense_Mutation p.K117Q 0.20 tolerated(0.05) possibly_damaging(0.903) TCGA-EW-A1PB-01 20 62868702 62868702 A T MYT1 Missense_Mutation p.N1018Y 0.42 probably_damaging(0.999) TCGA-EW-A1PB-01 21 16338927 16338927 G - NRIP1 Frame_Shift_Del p.F529Lfs*11 0.12 TCGA-EW-A1PB-01 22 24515401 24515401 T G CABIN1 Silent p.P1456P 0.33 TCGA-EW-A1PB-01 22 30032827 30032844 ATCAAGGACACAGTGGCC - NF2 In_Frame_Del p.I68_A73del 0.44 TCGA-EW-A1PB-01 2 10126310 10126310 G A GRHL1 Missense_Mutation p.G390E 0.27 deleterious(0) probably_damaging(1) TCGA-EW-A1PB-01 2 108487221 108487221 G C RGPD4 Missense_Mutation p.D921H 0.33 deleterious(0.02) possibly_damaging(0.615) TCGA-EW-A1PB-01 2 109547474 109547474 C T EDAR 5'UTR 0.24 TCGA-EW-A1PB-01 2 152435968 152435968 C G NEB Missense_Mutation p.E5530Q 0.19 probably_damaging(0.995) TCGA-EW-A1PB-01 2 15374818 15374818 C G NBAS Missense_Mutation p.E1999D 0.22 tolerated(0.56) benign(0.008) TCGA-EW-A1PB-01 2 160825803 160825803 G C PLA2R1 Missense_Mutation p.Q910E 0.25 tolerated(0.35) benign(0.042) TCGA-EW-A1PB-01 2 166611525 166611525 G A GALNT3 Nonsense_Mutation p.Q481* 0.24 TCGA-EW-A1PB-01 2 170428450 170428450 T A FASTKD1 Missense_Mutation p.Q30H 0.22 tolerated(0.39) benign(0.007) TCGA-EW-A1PB-01 2 17896164 17896164 G A SMC6 Missense_Mutation p.S565F 0.15 deleterious(0) probably_damaging(0.989) TCGA-EW-A1PB-01 2 203420345 203420345 C G BMPR2 Missense_Mutation p.P653A 0.19 deleterious(0.01) possibly_damaging(0.851) TCGA-EW-A1PB-01 2 208811101 208811101 G C PLEKHM3 Nonsense_Mutation p.S561* 0.27 TCGA-EW-A1PB-01 2 219288519 219288519 C A VIL1 Silent p.A6A 0.10 TCGA-EW-A1PB-01 2 220283541 220283541 C T DES Silent p.F119F 0.38 TCGA-EW-A1PB-01 2 26688938 26688938 C G OTOF Missense_Mutation p.D1503H 0.18 deleterious(0) probably_damaging(0.953) TCGA-EW-A1PB-01 2 33012141 33012141 C T TTC27 Silent p.D641D 0.43 TCGA-EW-A1PB-01 2 44428733 44428733 C G PPM1B Nonsense_Mutation p.S132* 0.20 TCGA-EW-A1PB-01 2 55470655 55470655 C T MTIF2 Silent p.K487K 0.24 TCGA-EW-A1PB-01 2 55806833 55806833 C T SMEK2 Missense_Mutation p.E484K 0.16 tolerated(0.13) benign(0.001) TCGA-EW-A1PB-01 3 107451818 107451818 G C BBX Missense_Mutation p.G206A 0.22 deleterious(0.01) probably_damaging(1) TCGA-EW-A1PB-01 3 113379916 113379916 C G KIAA2018 Missense_Mutation p.E205Q 0.24 probably_damaging(0.998) TCGA-EW-A1PB-01 3 121658238 121658238 C G SLC15A2 Missense_Mutation p.P602A 0.25 tolerated(0.4) benign(0.004) TCGA-EW-A1PB-01 3 123376021 123376021 C A MYLK Nonsense_Mutation p.E1414* 0.29 TCGA-EW-A1PB-01 3 138213720 138213720 A G CEP70 3'UTR 0.25 TCGA-EW-A1PB-01 3 14199937 14199937 A C XPC Missense_Mutation p.S482R 0.11 tolerated(0.24) benign(0.005) TCGA-EW-A1PB-01 3 142095323 142095323 T C XRN1 Silent p.R943R 0.31 TCGA-EW-A1PB-01 3 1444013 1444013 G A CNTN6 Silent p.R943R 0.30 TCGA-EW-A1PB-01 3 42917067 42917067 A C CYP8B1 Missense_Mutation p.M81R 0.39 deleterious(0) possibly_damaging(0.816) TCGA-EW-A1PB-01 3 47045824 47045824 C T NBEAL2 Nonsense_Mutation p.Q2047* 0.55 TCGA-EW-A1PB-01 3 48613091 48613091 C A COL7A1 Missense_Mutation p.D1983Y 0.55 unknown(0) TCGA-EW-A1PB-01 3 69026906 69026906 G A EOGT Missense_Mutation p.P399S 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-EW-A1PB-01 4 139980675 139980675 G A ELF2 Missense_Mutation p.A403V 0.31 tolerated(0.16) benign(0.393) TCGA-EW-A1PB-01 4 156634276 156634276 C G GUCY1A3 Missense_Mutation p.I371M 0.33 deleterious(0) possibly_damaging(0.839) TCGA-EW-A1PB-01 4 186423323 186423356 TCTAAAGCCTTGACTTTAGATTTGGAGTTGACAA - PDLIM3 3'UTR 0.62 TCGA-EW-A1PB-01 4 21950346 21950346 G T KCNIP4 5'UTR 0.30 TCGA-EW-A1PB-01 4 57676227 57676227 G C SPINK2 3'UTR 0.53 TCGA-EW-A1PB-01 4 70504739 70504739 G C UGT2A2 Nonsense_Mutation p.S207* 0.47 TCGA-EW-A1PB-01 4 76722346 76722346 G C USO1 Missense_Mutation p.R669P 0.09 deleterious(0) probably_damaging(0.988) TCGA-EW-A1PB-01 5 140767563 140767563 C A PCDHGB4 Missense_Mutation p.P38T 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-EW-A1PB-01 5 150563018 150563018 C T CCDC69 Missense_Mutation p.V291I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EW-A1PB-01 5 151179507 151179507 C G G3BP1 Missense_Mutation p.Q301E 0.11 tolerated(0.09) benign(0) TCGA-EW-A1PB-01 5 176829562 176829562 C A F12 Missense_Mutation p.D557Y 0.19 deleterious(0) probably_damaging(1) TCGA-EW-A1PB-01 5 36986108 36986108 A T NIPBL Silent p.P942P 0.08 TCGA-EW-A1PB-01 5 40998738 40998738 G T MROH2B Missense_Mutation p.L1543I 0.25 tolerated(0.11) benign(0.024) TCGA-EW-A1PB-01 5 75969810 75969810 G A IQGAP2 Silent p.K1081K 0.31 TCGA-EW-A1PB-01 5 86703897 86703897 C G CCNH Missense_Mutation p.E141Q 0.23 deleterious(0.03) benign(0.436) TCGA-EW-A1PB-01 6 110531945 110531945 G C CDC40 Missense_Mutation p.K222N 0.38 deleterious(0.05) possibly_damaging(0.824) TCGA-EW-A1PB-01 6 144869832 144869832 C A UTRN Missense_Mutation p.Q2218K 0.20 tolerated(0.31) benign(0.001) TCGA-EW-A1PB-01 6 165827098 165827098 C G PDE10A Missense_Mutation p.G390A 0.25 deleterious(0.04) probably_damaging(1) TCGA-EW-A1PB-01 6 165832134 165832134 G T PDE10A Silent p.T329T 0.38 TCGA-EW-A1PB-01 6 27114571 27114571 C T HIST1H2BK Missense_Mutation p.E3K 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-EW-A1PB-01 6 31634678 31634678 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.E24K 0.06 deleterious(0.01) possibly_damaging(0.864) TCGA-EW-A1PB-01 6 4037783 4037783 G A PRPF4B Missense_Mutation p.R464K 0.29 tolerated(0.06) benign(0.067) TCGA-EW-A1PB-01 6 41753249 41753249 C G PRICKLE4 Missense_Mutation p.L185V 0.50 deleterious(0.01) probably_damaging(0.979) TCGA-EW-A1PB-01 6 41757047 41757047 C A TOMM6 Missense_Mutation p.A69E 0.32 deleterious(0) probably_damaging(0.978) TCGA-EW-A1PB-01 6 42976473 42976473 C G PPP2R5D Missense_Mutation p.L357V 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-EW-A1PB-01 6 44219554 44219554 G A HSP90AB1 Silent p.E465E 0.54 TCGA-EW-A1PB-01 6 49426879 49426879 T C MUT Missense_Mutation p.T101A 0.31 tolerated_low_confidence(0.83) benign(0.059) TCGA-EW-A1PB-01 6 52876589 52876589 C T ICK Silent p.L490L 0.20 TCGA-EW-A1PB-01 6 71546704 71546704 G C SMAP1 Missense_Mutation p.E213Q 0.37 tolerated(0.12) probably_damaging(0.985) TCGA-EW-A1PB-01 6 87964520 87964520 G A ZNF292 Silent p.L391L 0.31 TCGA-EW-A1PB-01 7 100773847 100773847 G T SERPINE1 Silent p.L139L 0.12 TCGA-EW-A1PB-01 7 111395657 111395657 T A DOCK4 Missense_Mutation p.S1435C 0.46 deleterious(0) probably_damaging(0.997) TCGA-EW-A1PB-01 7 111846820 111846820 C T ZNF277 Missense_Mutation p.R17C 0.23 tolerated_low_confidence(0.08) benign(0) TCGA-EW-A1PB-01 7 136699784 136699784 A T CHRM2 Missense_Mutation p.N58Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-EW-A1PB-01 7 140389402 140389402 G C ADCK2 Missense_Mutation p.Q521H 0.18 tolerated(0.2) benign(0.002) TCGA-EW-A1PB-01 7 143055977 143055977 C G FAM131B Missense_Mutation p.D137H 0.13 tolerated(0.15) probably_damaging(0.982) TCGA-EW-A1PB-01 7 144532698 144532698 C G TPK1 5'UTR 0.26 TCGA-EW-A1PB-01 7 21603876 21603876 C T DNAH11 Missense_Mutation p.T352M 0.22 benign(0.063) TCGA-EW-A1PB-01 7 27186870 27186870 T C HOXA6 Intron 0.33 TCGA-EW-A1PB-01 7 720286 720286 G C PRKAR1B Silent p.T85T 0.71 TCGA-EW-A1PB-01 7 81714138 81714138 G A CACNA2D1 Missense_Mutation p.S202L 0.18 deleterious(0.02) benign(0.189) TCGA-EW-A1PB-01 7 87069137 87069137 A C ABCB4 Missense_Mutation p.V526G 0.27 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PB-01 8 10583229 10583229 G C SOX7 3'UTR 0.36 TCGA-EW-A1PB-01 8 121292171 121292171 C G COL14A1 Intron 0.29 TCGA-EW-A1PB-01 8 121383559 121383559 T G COL14A1 3'UTR 0.30 TCGA-EW-A1PB-01 8 144993117 144993117 C A PLEC Missense_Mutation p.E3761D 0.14 probably_damaging(0.997) TCGA-EW-A1PB-01 8 22052371 22052371 G A BMP1 Nonsense_Mutation p.W526* 0.29 TCGA-EW-A1PB-01 8 22107968 22107968 C T POLR3D Silent p.H378H 0.21 TCGA-EW-A1PB-01 8 56668876 56668876 G A TMEM68 Silent p.F140F 0.20 TCGA-EW-A1PB-01 8 86572198 86572198 A T REXO1L1P 3'UTR 0.12 TCGA-EW-A1PB-01 9 112199160 112199164 TACCC - PTPN3 Splice_Site p.X225_splice 0.19 TCGA-EW-A1PB-01 9 140476939 140476939 C T ZMYND19 3'UTR 0.24 TCGA-EW-A1PB-01 X 105937522 105937522 G A RNF128 Missense_Mutation p.R70K 0.24 deleterious(0.02) possibly_damaging(0.793) TCGA-EW-A1PB-01 X 128889307 128889307 A C XPNPEP2 Missense_Mutation p.I419L 0.38 deleterious(0) probably_damaging(0.987) TCGA-EW-A1PB-01 X 129149215 129149215 C G BCORL1 Missense_Mutation p.P823A 0.50 benign(0.059) TCGA-EW-A1PB-01 X 130419983 130419983 T A IGSF1 Missense_Mutation p.Y46F 0.50 tolerated(0.25) possibly_damaging(0.755) TCGA-EW-A1PB-01 X 132160197 132160197 G T USP26 Silent p.L684L 0.32 TCGA-EW-A1PB-01 X 152960700 152960700 G A SLC6A8 3'UTR 0.56 TCGA-EW-A1PB-01 X 18911755 18911755 C A PHKA2 Missense_Mutation p.D1186Y 0.07 deleterious(0) benign(0.367) TCGA-EW-A1PB-01 X 46915481 46915481 C G JADE3 Intron 0.20 TCGA-EW-A1PB-01 X 48762118 48762118 G A SLC35A2 Silent p.S356S 0.33 TCGA-EW-A1PB-01 X 54957054 54957054 C A TRO Missense_Mutation p.F1299L 0.09 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EW-A1PB-01 X 76938640 76938640 G C ATRX Missense_Mutation p.S703C 0.07 probably_damaging(0.997) TCGA-EW-A1PD-01 10 106037866 106037866 T A GSTO2 Missense_Mutation p.F120I 0.21 deleterious(0) probably_damaging(0.936) TCGA-EW-A1PD-01 10 121347702 121347702 G C TIAL1 Missense_Mutation p.Q31E 0.31 deleterious(0.03) possibly_damaging(0.773) TCGA-EW-A1PD-01 10 134754565 134754565 C A TTC40 Splice_Site p.X103_splice 0.25 TCGA-EW-A1PD-01 10 17110195 17110195 G A CUBN Missense_Mutation p.T959I 0.21 tolerated(0.1) benign(0.132) TCGA-EW-A1PD-01 11 10019855 10019855 G C SBF2 Silent p.L311L 0.32 TCGA-EW-A1PD-01 11 10019856 10019856 A C SBF2 Missense_Mutation p.L311R 0.32 deleterious(0) probably_damaging(0.933) TCGA-EW-A1PD-01 11 2337855 2337855 G C TSPAN32 Missense_Mutation p.G226A 0.43 deleterious(0.01) probably_damaging(0.91) TCGA-EW-A1PD-01 11 2439002 2439002 C T TRPM5 Missense_Mutation p.G322S 0.31 tolerated(0.21) benign(0.094) TCGA-EW-A1PD-01 11 58920622 58920622 C G FAM111A Missense_Mutation p.A494G 0.38 tolerated(0.38) benign(0.004) TCGA-EW-A1PD-01 11 60558546 60558546 C A MS4A10 Missense_Mutation p.P95T 0.21 deleterious(0) probably_damaging(1) TCGA-EW-A1PD-01 11 61249870 61249870 G C PPP1R32 Missense_Mutation p.S66T 0.23 tolerated(0.27) benign(0.046) TCGA-EW-A1PD-01 11 61253382 61253382 C A PPP1R32 Missense_Mutation p.P229H 0.27 deleterious(0.03) probably_damaging(0.98) TCGA-EW-A1PD-01 11 61578278 61578287 GGGTCTTTGC - FADS1 Frame_Shift_Del p.R284Qfs*39 0.57 TCGA-EW-A1PD-01 11 66619395 66619395 C T PC Missense_Mutation p.M616I 0.27 deleterious(0.01) benign(0.337) TCGA-EW-A1PD-01 11 68772820 68772820 G T MRGPRF Missense_Mutation p.L320M 0.44 deleterious(0.02) possibly_damaging(0.798) TCGA-EW-A1PD-01 12 100496589 100496589 C G UHRF1BP1L Missense_Mutation p.R98T 0.37 deleterious(0) probably_damaging(0.983) TCGA-EW-A1PD-01 12 117465283 117465283 C G FBXW8 Missense_Mutation p.D542E 0.23 tolerated(0.53) benign(0.006) TCGA-EW-A1PD-01 12 58018918 58018918 C T SLC26A10 Missense_Mutation p.P453S 0.25 tolerated(0.61) benign(0.008) TCGA-EW-A1PD-01 12 64746739 64746739 T G C12orf56 Missense_Mutation p.K117T 0.11 tolerated(0.11) benign(0.109) TCGA-EW-A1PD-01 12 6776802 6776802 A G ZNF384 3'UTR 0.53 TCGA-EW-A1PD-01 12 88510906 88510906 G C CEP290 Missense_Mutation p.D576E 0.09 benign(0.011) TCGA-EW-A1PD-01 12 94673274 94673274 C T PLXNC1 Silent p.I1208I 0.32 TCGA-EW-A1PD-01 13 26129206 26129206 G A ATP8A2 Silent p.Q421Q 0.74 TCGA-EW-A1PD-01 13 49039423 49039430 ACATCTAT - RB1 Frame_Shift_Del p.I804Ffs*8 0.78 TCGA-EW-A1PD-01 13 49039484 49039484 A - RB1 Frame_Shift_Del p.M825* 0.71 TCGA-EW-A1PD-01 13 86369992 86369992 T A SLITRK6 Missense_Mutation p.N218Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PD-01 14 24108040 24108040 G C DHRS2 5'UTR 0.38 TCGA-EW-A1PD-01 14 91779648 91779648 C T CCDC88C Missense_Mutation p.E838K 0.32 deleterious(0) possibly_damaging(0.507) TCGA-EW-A1PD-01 15 27128507 27128507 C T GABRA5 Silent p.F100F 0.20 TCGA-EW-A1PD-01 15 72499505 72499505 C T PKM Missense_Mutation p.C317Y 0.27 deleterious(0.01) possibly_damaging(0.872) TCGA-EW-A1PD-01 16 4715104 4715104 G T MGRN1 Silent p.V210V 0.32 TCGA-EW-A1PD-01 17 19315053 19315053 C G RNF112 Intron 0.47 TCGA-EW-A1PD-01 17 25937188 25937188 T G KSR1 Missense_Mutation p.L659R 0.43 deleterious(0) probably_damaging(0.973) TCGA-EW-A1PD-01 17 30771527 30771527 T A PSMD11 5'UTR 0.33 TCGA-EW-A1PD-01 17 3119133 3119133 C T OR1A1 Silent p.F73F 0.12 TCGA-EW-A1PD-01 17 37627547 37627547 G T CDK12 Nonsense_Mutation p.E488* 0.48 TCGA-EW-A1PD-01 17 37872089 37872089 T G ERBB2 Missense_Mutation p.H470Q 0.58 tolerated(0.29) benign(0.002) TCGA-EW-A1PD-01 17 40835917 40835917 C T CNTNAP1 Missense_Mutation p.A49V 0.48 tolerated(0.07) benign(0.086) TCGA-EW-A1PD-01 17 56285904 56285904 T G MKS1 Silent p.T355T 0.13 TCGA-EW-A1PD-01 17 57774717 57774717 T C PTRH2 3'UTR 0.23 TCGA-EW-A1PD-01 17 65925540 65925540 G T BPTF Missense_Mutation p.R2029S 0.16 possibly_damaging(0.891) TCGA-EW-A1PD-01 17 79769817 79769817 C A GCGR Missense_Mutation p.N291K 0.11 deleterious(0) probably_damaging(0.976) TCGA-EW-A1PD-01 17 8273116 8273116 G A KRBA2 Missense_Mutation p.S272F 0.60 tolerated(0.09) possibly_damaging(0.901) TCGA-EW-A1PD-01 18 2567097 2567097 G C METTL4 Missense_Mutation p.T40S 0.36 tolerated_low_confidence(0.86) benign(0.007) TCGA-EW-A1PD-01 18 670739 670739 T C TYMS Missense_Mutation p.Y202H 0.29 deleterious(0.03) possibly_damaging(0.797) TCGA-EW-A1PD-01 19 14743731 14743731 A T EMR3 Splice_Site p.X548_splice 0.43 TCGA-EW-A1PD-01 19 18963896 18963896 T C UPF1 Intron 0.26 TCGA-EW-A1PD-01 19 31769348 31769348 T G TSHZ3 Missense_Mutation p.T451P 0.24 tolerated(0.06) possibly_damaging(0.888) TCGA-EW-A1PD-01 19 36387325 36387339 GCCACGTGCAAGACC - NFKBID In_Frame_Del p.V121_A125del 0.30 TCGA-EW-A1PD-01 19 43967377 43967377 C A LYPD3 Nonsense_Mutation p.E149* 0.27 TCGA-EW-A1PD-01 19 48389449 48389449 G C SULT2A1 Silent p.T22T 0.13 TCGA-EW-A1PD-01 19 56896271 56896271 C G ZNF582 Missense_Mutation p.G172A 0.15 tolerated(0.06) benign(0.049) TCGA-EW-A1PD-01 19 5918623 5918623 G A RANBP3 Silent p.L453L 0.53 TCGA-EW-A1PD-01 1 160921037 160921037 C T ITLN2 Silent p.Q79Q 0.31 TCGA-EW-A1PD-01 1 197073959 197073959 C T ASPM Nonsense_Mutation p.W1474* 0.52 TCGA-EW-A1PD-01 1 33099280 33099280 T C ZBTB8OS Missense_Mutation p.Y110C 0.18 deleterious(0.05) probably_damaging(0.989) TCGA-EW-A1PD-01 1 40734181 40734181 G C ZMPSTE24 Missense_Mutation p.E150Q 0.21 deleterious(0.03) probably_damaging(0.977) TCGA-EW-A1PD-01 1 42905556 42905556 C T ZMYND12 Missense_Mutation p.E189K 0.33 tolerated(0.06) benign(0.024) TCGA-EW-A1PD-01 1 45110399 45110399 G C RNF220 Missense_Mutation p.E386Q 0.17 tolerated(0.06) probably_damaging(0.974) TCGA-EW-A1PD-01 20 61389653 61389653 C A NTSR1 Missense_Mutation p.P318T 0.09 deleterious(0) probably_damaging(0.991) TCGA-EW-A1PD-01 21 45843548 45843548 T G TRPM2 Missense_Mutation p.L1161R 0.29 tolerated(0.11) possibly_damaging(0.466) TCGA-EW-A1PD-01 22 41752463 41752463 G A ZC3H7B Missense_Mutation p.D834N 0.50 deleterious(0) probably_damaging(1) TCGA-EW-A1PD-01 2 102508181 102508181 A G MAP4K4 3'Flank 0.41 TCGA-EW-A1PD-01 2 149247498 149247498 G T MBD5 Nonsense_Mutation p.E1200* 0.15 TCGA-EW-A1PD-01 2 153591569 153591569 G C ARL6IP6 Missense_Mutation p.W172C 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-EW-A1PD-01 2 158399221 158399221 T G ACVR1C Missense_Mutation p.K366T 0.28 deleterious(0) possibly_damaging(0.869) TCGA-EW-A1PD-01 2 170537535 170537535 G C CCDC173 Missense_Mutation p.H92Q 0.44 tolerated(0.08) possibly_damaging(0.719) TCGA-EW-A1PD-01 2 189452661 189452661 A G GULP1 Silent p.K276K 0.31 TCGA-EW-A1PD-01 2 228855884 228855884 C T SPHKAP Silent p.P1597P 0.12 TCGA-EW-A1PD-01 2 234201045 234201045 C G ATG16L1 Missense_Mutation p.F531L 0.35 deleterious(0.03) benign(0.002) TCGA-EW-A1PD-01 2 238262027 238262027 C A COL6A3 Missense_Mutation p.G2216V 0.43 benign(0.017) TCGA-EW-A1PD-01 2 80530609 80530609 C T LRRTM1 Silent p.L112L 0.38 TCGA-EW-A1PD-01 3 112299994 112299994 A G SLC35A5 Missense_Mutation p.T344A 0.19 tolerated(0.34) possibly_damaging(0.626) TCGA-EW-A1PD-01 3 113098230 113098230 C T WDR52 Missense_Mutation p.E741K 0.26 tolerated(0.23) benign(0.085) TCGA-EW-A1PD-01 3 113122794 113122794 G A WDR52 Nonsense_Mutation p.R359* 0.40 TCGA-EW-A1PD-01 3 114069881 114069881 C T ZBTB20 Silent p.L348L 0.35 TCGA-EW-A1PD-01 3 126070957 126070957 G A KLF15 Missense_Mutation p.S270F 0.37 deleterious(0.02) possibly_damaging(0.698) TCGA-EW-A1PD-01 3 129389639 129389639 C G TMCC1 Missense_Mutation p.G349R 0.32 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PD-01 3 49836206 49836206 C A CDHR4 Intron 0.30 TCGA-EW-A1PD-01 3 50257763 50257763 T A SLC38A3 RNA 0.67 TCGA-EW-A1PD-01 4 114429417 114429417 T A CAMK2D Intron 0.28 TCGA-EW-A1PD-01 5 139940245 139940245 G A APBB3 Silent p.L344L 0.21 TCGA-EW-A1PD-01 5 145252322 145252322 G A GRXCR2 Silent p.V70V 0.20 TCGA-EW-A1PD-01 6 146480580 146480580 G T GRM1 Missense_Mutation p.G266V 0.32 deleterious(0.04) possibly_damaging(0.665) TCGA-EW-A1PD-01 6 160328344 160328344 C G MAS1 Silent p.G119G 0.23 TCGA-EW-A1PD-01 6 160858218 160858218 C T SLC22A3 Silent p.C421C 0.28 TCGA-EW-A1PD-01 6 21198270 21198272 GTG TT CDKAL1 Frame_Shift_Del p.V440Ffs*2 0.22 TCGA-EW-A1PD-01 6 70935663 70935663 G A COL9A1 Silent p.N851N 0.20 TCGA-EW-A1PD-01 7 100085885 100085885 C T NYAP1 Missense_Mutation p.P181S 0.14 tolerated(0.89) benign(0.003) TCGA-EW-A1PD-01 7 121698936 121698936 T A PTPRZ1 Missense_Mutation p.L2204H 0.14 deleterious(0) probably_damaging(0.989) TCGA-EW-A1PD-01 7 44805751 44805761 CTCCTCTCACA - ZMIZ2 Splice_Site p.X748_splice 0.58 TCGA-EW-A1PD-01 7 5569008 5569008 C G ACTB Missense_Mutation p.Q49H 0.40 tolerated_low_confidence(0.08) probably_damaging(0.988) TCGA-EW-A1PD-01 7 64864828 64864828 T A ZNF92 3'UTR 0.50 TCGA-EW-A1PD-01 7 82544673 82544673 C G PCLO Missense_Mutation p.R4210T 0.17 unknown(0) TCGA-EW-A1PD-01 8 53570383 53570383 C A RB1CC1 Missense_Mutation p.R669I 0.40 deleterious_low_confidence(0) benign(0.247) TCGA-EW-A1PD-01 8 86572510 86572510 G A REXO1L1P 3'UTR 0.25 TCGA-EW-A1PD-01 8 87588343 87588343 C T CNGB3 Missense_Mutation p.E707K 0.52 tolerated(0.74) benign(0.05) TCGA-EW-A1PD-01 X 107224238 107224238 G C TEX13B 3'UTR 0.61 TCGA-EW-A1PD-01 X 9000176 9000176 G T FAM9B Missense_Mutation p.T59N 0.47 deleterious(0) benign(0.396) TCGA-EW-A1PE-01 10 46122367 46122367 G A ZFAND4 Nonsense_Mutation p.Q302* 0.33 TCGA-EW-A1PE-01 12 7074852 7074852 T G PHB2 Missense_Mutation p.K299T 0.35 deleterious_low_confidence(0) benign(0.395) TCGA-EW-A1PE-01 13 32911964 32911964 G C BRCA2 Missense_Mutation p.E1158Q 0.29 tolerated(0.12) possibly_damaging(0.607) TCGA-EW-A1PE-01 13 32912065 32912065 G C BRCA2 Missense_Mutation p.K1191N 0.24 tolerated(0.13) benign(0.221) TCGA-EW-A1PE-01 13 52026554 52026554 C T INTS6 Missense_Mutation p.M36I 0.38 tolerated(0.25) benign(0.003) TCGA-EW-A1PE-01 14 62211517 62211517 C T HIF1A Nonsense_Mutation p.Q754* 0.43 TCGA-EW-A1PE-01 14 94467722 94467722 C T LINC00521 RNA 0.47 TCGA-EW-A1PE-01 15 23689114 23689114 C T GOLGA6L2 Missense_Mutation p.G134D 0.38 probably_damaging(0.982) TCGA-EW-A1PE-01 17 11772531 11772531 C T DNAH9 Silent p.A3338A 0.29 TCGA-EW-A1PE-01 17 12016647 12016648 AA - MAP2K4 Frame_Shift_Del p.D263Cfs*4 0.44 TCGA-EW-A1PE-01 17 2265513 2265513 T C SGSM2 Missense_Mutation p.L136P 0.53 deleterious(0) probably_damaging(0.99) TCGA-EW-A1PE-01 17 39316427 39316427 T C KRTAP4-4 3'UTR 0.19 TCGA-EW-A1PE-01 18 13387612 13387612 C T LDLRAD4 5'UTR 0.45 TCGA-EW-A1PE-01 19 49227977 49227977 G A RASIP1 Nonsense_Mutation p.R790* 0.44 TCGA-EW-A1PE-01 1 116947130 116947130 T G ATP1A1 3'UTR 0.21 TCGA-EW-A1PE-01 1 149939377 149939377 G A OTUD7B Missense_Mutation p.S115F 0.13 tolerated(0.06) probably_damaging(0.998) TCGA-EW-A1PE-01 1 180971828 180971828 C T STX6 Missense_Mutation p.E72K 0.30 deleterious(0.01) possibly_damaging(0.452) TCGA-EW-A1PE-01 20 36149618 36149619 - GGGT NNAT 5'UTR 0.74 TCGA-EW-A1PE-01 20 5565018 5565018 C A GPCPD1 Intron 0.38 TCGA-EW-A1PE-01 20 58559737 58559737 A G CDH26 Silent p.E195E 0.40 TCGA-EW-A1PE-01 22 40661715 40661715 A G TNRC6B Missense_Mutation p.N494S 0.45 tolerated(0.85) benign(0.002) TCGA-EW-A1PE-01 2 131785560 131785560 A T ARHGEF4 Missense_Mutation p.E157V 0.20 deleterious(0) possibly_damaging(0.762) TCGA-EW-A1PE-01 2 241989250 241989250 C T SNED1 Silent p.C545C 0.14 TCGA-EW-A1PE-01 3 10127593 10127593 G T FANCD2 Nonsense_Mutation p.E1108* 0.28 TCGA-EW-A1PE-01 3 178936094 178936094 C A PIK3CA Missense_Mutation p.Q546K 0.35 deleterious(0.03) probably_damaging(0.952) TCGA-EW-A1PE-01 3 178952018 178952018 A G PIK3CA Missense_Mutation p.T1025A 0.35 deleterious(0.01) probably_damaging(0.931) TCGA-EW-A1PE-01 3 185542636 185542636 G T IGF2BP2 Missense_Mutation p.S38Y 0.22 deleterious(0.01) probably_damaging(0.914) TCGA-EW-A1PE-01 3 97851916 97851916 C T OR5H1 Silent p.A125A 0.50 TCGA-EW-A1PE-01 4 153251936 153251936 C T FBXW7 Missense_Mutation p.R357K 0.36 deleterious(0.02) benign(0.047) TCGA-EW-A1PE-01 4 175896768 175896768 C T ADAM29 Missense_Mutation p.P31L 0.48 deleterious(0.03) possibly_damaging(0.848) TCGA-EW-A1PE-01 5 122682280 122682282 TCC - CEP120 In_Frame_Del p.E964del 0.61 TCGA-EW-A1PE-01 5 161576176 161576176 G T GABRG2 Missense_Mutation p.V369F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PE-01 5 40692393 40692393 C T PTGER4 Silent p.S460S 0.44 TCGA-EW-A1PE-01 5 79355631 79355631 G A THBS4 Missense_Mutation p.R297Q 0.28 tolerated(0.31) benign(0.004) TCGA-EW-A1PE-01 5 80338748 80338748 G A RASGRF2 Missense_Mutation p.R114H 0.34 deleterious(0) probably_damaging(1) TCGA-EW-A1PE-01 6 42893243 42893243 C G PTCRA Silent p.T223T 0.35 TCGA-EW-A1PE-01 9 100087310 100087310 G A CCDC180 Missense_Mutation p.E505K 0.62 deleterious(0) probably_damaging(0.995) TCGA-EW-A1PE-01 9 131859542 131859542 C T CRAT Missense_Mutation p.G505D 0.56 tolerated(0.61) benign(0) TCGA-EW-A1PE-01 9 35733103 35733103 C G CREB3 Silent p.T80T 0.34 TCGA-EW-A1PE-01 9 71628862 71628862 C A PRKACG Silent p.T49T 0.29 TCGA-EW-A1PE-01 X 12903805 12903805 C T TLR7 Missense_Mutation p.P60S 0.10 deleterious(0) probably_damaging(1) TCGA-EW-A1PG-01 12 56982085 56982085 C T RBMS2 Missense_Mutation p.P357L 0.13 deleterious(0) probably_damaging(0.998) TCGA-EW-A1PG-01 17 7217646 7217646 A - GPS2 Frame_Shift_Del p.L94Yfs*15 0.16 TCGA-EW-A1PG-01 19 3462786 3462787 - C NFIC 3'UTR 0.55 TCGA-EW-A1PG-01 1 159163753 159163753 C T CADM3 Missense_Mutation p.A239V 0.22 tolerated(1) benign(0.008) TCGA-EW-A1PG-01 1 16945329 16945329 A G RP5-1182A14.5 3'Flank 0.33 TCGA-EW-A1PG-01 1 89519074 89519074 C T GBP1 Silent p.T581T 0.11 TCGA-EW-A1PG-01 20 20003112 20003112 A G NAA20 Silent p.P22P 0.10 TCGA-EW-A1PG-01 20 58559787 58559787 T A CDH26 Nonsense_Mutation p.L212* 0.10 TCGA-EW-A1PG-01 21 34668541 34668541 C T IL10RB Missense_Mutation p.S286L 0.12 deleterious(0.04) benign(0.02) TCGA-EW-A1PG-01 2 182542799 182542799 A T NEUROD1 Missense_Mutation p.D263E 0.18 tolerated(0.63) benign(0.009) TCGA-EW-A1PG-01 2 207988824 207988824 A T KLF7 Nonsense_Mutation p.L136* 0.11 TCGA-EW-A1PG-01 4 79462038 79462038 G A FRAS1 Silent p.Q3933Q 0.12 TCGA-EW-A1PG-01 7 157018128 157018131 AAGC - UBE3C Frame_Shift_Del p.Q711Kfs*16 0.15 TCGA-EW-A1PG-01 X 14599464 14599464 G A GLRA2 Missense_Mutation p.D144N 0.08 deleterious(0.01) possibly_damaging(0.512) TCGA-EW-A1PH-01 10 55582871 55582871 T A PCDH15 Missense_Mutation p.N1541Y 0.29 deleterious_low_confidence(0.02) benign(0.067) TCGA-EW-A1PH-01 10 74127842 74127842 G A MICU1 3'UTR 0.17 TCGA-EW-A1PH-01 11 6499366 6499366 T C ARFIP2 Silent p.L200L 0.18 TCGA-EW-A1PH-01 12 123011466 123011466 G A RSRC2 5'UTR 0.24 TCGA-EW-A1PH-01 12 52636898 52636898 G C KRT7 Missense_Mutation p.E321Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PH-01 12 71833917 71833917 G A LGR5 Silent p.A19A 0.33 TCGA-EW-A1PH-01 13 101881935 101881935 C A NALCN Missense_Mutation p.V479F 0.21 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PH-01 14 24032994 24032994 G T AP1G2 Missense_Mutation p.A388D 0.19 tolerated(0.2) benign(0.112) TCGA-EW-A1PH-01 14 24709143 24709143 G C TINF2 Intron 0.18 TCGA-EW-A1PH-01 14 75483671 75483671 C T MLH3 3'UTR 0.82 TCGA-EW-A1PH-01 14 81329196 81329196 G A CEP128 Missense_Mutation p.R223W 0.36 deleterious(0) probably_damaging(0.997) TCGA-EW-A1PH-01 15 34655637 34655637 C T LPCAT4 Nonsense_Mutation p.W244* 0.27 TCGA-EW-A1PH-01 16 230683 230683 C T HBQ1 Silent p.P38P 0.62 TCGA-EW-A1PH-01 16 30389183 30389183 T C MYLPF Missense_Mutation p.Y158H 0.45 tolerated(0.29) possibly_damaging(0.573) TCGA-EW-A1PH-01 16 3074314 3074314 T C THOC6 5'UTR 0.36 TCGA-EW-A1PH-01 16 50368665 50368665 C T BRD7 Missense_Mutation p.A282T 0.13 tolerated(0.51) benign(0.003) TCGA-EW-A1PH-01 17 11597227 11597227 C G DNAH9 Missense_Mutation p.L1553V 0.19 benign(0.344) TCGA-EW-A1PH-01 17 7577061 7577064 CTTT - TP53 Frame_Shift_Del p.K292Gfs*52 0.78 TCGA-EW-A1PH-01 18 72109333 72109333 C G FAM69C Missense_Mutation p.D299H 0.05 deleterious(0) probably_damaging(1) TCGA-EW-A1PH-01 19 42126986 42126986 C T CEACAM4 Missense_Mutation p.R186H 0.20 tolerated(0.36) benign(0.001) TCGA-EW-A1PH-01 19 49119337 49119337 G A RPL18 Silent p.S140S 0.34 TCGA-EW-A1PH-01 19 49878066 49878066 G A DKKL1 Nonsense_Mutation p.W170* 0.31 TCGA-EW-A1PH-01 19 57641241 57641241 G T USP29 Nonsense_Mutation p.E400* 0.48 TCGA-EW-A1PH-01 1 115217393 115217393 G C AMPD1 Missense_Mutation p.H627D 0.27 deleterious(0) probably_damaging(0.973) TCGA-EW-A1PH-01 1 12368636 12368636 A T VPS13D Silent p.T2196T 0.32 TCGA-EW-A1PH-01 1 147380700 147380700 C T GJA8 Silent p.I206I 0.12 TCGA-EW-A1PH-01 1 150998051 150998051 A G PRUNE Missense_Mutation p.D194G 0.15 deleterious(0) probably_damaging(0.998) TCGA-EW-A1PH-01 1 183093958 183093960 AAG - LAMC1 In_Frame_Del p.K865_D866delinsN 0.18 TCGA-EW-A1PH-01 1 214184963 214184963 G A PROX1 Missense_Mutation p.D645N 0.30 tolerated(0.05) possibly_damaging(0.594) TCGA-EW-A1PH-01 1 237806646 237806646 G A RYR2 Missense_Mutation p.G2414E 0.17 probably_damaging(1) TCGA-EW-A1PH-01 1 247836267 247836267 A G OR13G1 Missense_Mutation p.L26P 0.05 tolerated(0.21) possibly_damaging(0.459) TCGA-EW-A1PH-01 1 60306040 60306040 A G HOOK1 Missense_Mutation p.R200G 0.12 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PH-01 22 24124523 24124523 G A MMP11 Missense_Mutation p.E396K 0.22 tolerated(0.15) benign(0.052) TCGA-EW-A1PH-01 22 41077012 41077012 G A MCHR1 Missense_Mutation p.G117S 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-EW-A1PH-01 2 136566347 136566347 A G LCT Silent p.T1190T 0.27 TCGA-EW-A1PH-01 2 167284443 167284443 C T SCN7A Missense_Mutation p.R903H 0.27 deleterious(0.03) benign(0.04) TCGA-EW-A1PH-01 2 170134405 170134405 G T LRP2 Missense_Mutation p.A541E 0.19 probably_damaging(1) TCGA-EW-A1PH-01 2 176802242 176802242 G C KIAA1715 Missense_Mutation p.A295G 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-EW-A1PH-01 2 18736520 18736520 C G RDH14 Missense_Mutation p.M316I 0.31 tolerated(0.09) benign(0.165) TCGA-EW-A1PH-01 3 101390304 101390304 G C ZBTB11 Intron 0.58 TCGA-EW-A1PH-01 3 132224254 132224254 A T DNAJC13 Nonsense_Mutation p.K1665* 0.50 TCGA-EW-A1PH-01 3 137981339 137981339 C T NME9 3'UTR 0.12 TCGA-EW-A1PH-01 3 50252106 50252106 G A SLC38A3 RNA 0.28 TCGA-EW-A1PH-01 4 119952720 119952720 G A SYNPO2 Silent p.S930S 0.25 TCGA-EW-A1PH-01 4 39301747 39301747 T C RFC1 Missense_Mutation p.K902R 0.50 tolerated(0.05) benign(0.067) TCGA-EW-A1PH-01 4 48139295 48139295 T G TEC 3'UTR 0.61 TCGA-EW-A1PH-01 5 140012442 140012442 G T CD14 Missense_Mutation p.P43T 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EW-A1PH-01 5 32090922 32090922 G C PDZD2 Missense_Mutation p.M2456I 0.28 tolerated(0.11) benign(0.002) TCGA-EW-A1PH-01 6 33424124 33424124 G A ZBTB9 Missense_Mutation p.C416Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PH-01 6 46967911 46967911 A G GPR110 3'UTR 0.22 TCGA-EW-A1PH-01 7 20687685 20687685 C T ABCB5 Missense_Mutation p.S397L 0.30 deleterious(0) possibly_damaging(0.783) TCGA-EW-A1PH-01 7 94168303 94168303 A G CASD1 Missense_Mutation p.T431A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-EW-A1PH-01 8 110655166 110655166 A G SYBU Intron 0.22 TCGA-EW-A1PH-01 8 145947814 145947814 C T ZNF251 Missense_Mutation p.G411S 0.18 deleterious(0) probably_damaging(0.953) TCGA-EW-A1PH-01 8 52321996 52321996 G T PXDNL Missense_Mutation p.H730N 0.37 tolerated(0.28) possibly_damaging(0.477) TCGA-EW-A1PH-01 8 72967776 72967776 A T TRPA1 Missense_Mutation p.L475Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PH-01 8 87450847 87450847 C T WWP1 Missense_Mutation p.R595C 0.10 deleterious(0.01) benign(0.066) TCGA-EW-A1PH-01 8 88885484 88885484 A G DCAF4L2 Missense_Mutation p.L239P 0.09 deleterious(0) probably_damaging(0.999) TCGA-EW-A1PH-01 8 95500959 95500959 C T KIAA1429 Missense_Mutation p.R1805H 0.15 deleterious(0) possibly_damaging(0.715) TCGA-EW-A1PH-01 9 135517392 135517392 G A DDX31 Missense_Mutation p.T585M 0.14 deleterious(0) probably_damaging(1) TCGA-EW-A1PH-01 9 137623972 137623972 C T COL5A1 Missense_Mutation p.P463L 0.35 probably_damaging(0.998) TCGA-EW-A1PH-01 9 27949218 27949218 G A LINGO2 Silent p.I484I 0.21 TCGA-EW-A1PH-01 9 2812275 2812275 G C KIAA0020 Missense_Mutation p.H453D 0.22 deleterious(0) probably_damaging(0.956) TCGA-EW-A1PH-01 X 39931968 39931968 G A BCOR Silent p.T877T 0.75 TCGA-EW-A2FR-01 10 116032589 116032589 C T VWA2 Silent p.L154L 0.17 TCGA-EW-A2FR-01 10 124345758 124345758 C T DMBT1 Missense_Mutation p.R548W 0.10 tolerated(0.21) unknown(0) TCGA-EW-A2FR-01 10 125447685 125447685 G A GPR26 3'UTR 0.15 TCGA-EW-A2FR-01 10 129676427 129676427 C T CLRN3 Missense_Mutation p.G223R 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-EW-A2FR-01 10 69834957 69834957 G A HERC4 5'UTR 0.12 TCGA-EW-A2FR-01 10 73537524 73537524 G C C10orf54 5'Flank 0.23 TCGA-EW-A2FR-01 11 102822837 102822837 C T MMP13 Missense_Mutation p.D235N 0.15 tolerated(0.13) probably_damaging(1) TCGA-EW-A2FR-01 11 129306670 129306670 C T BARX2 Missense_Mutation p.P71L 0.16 deleterious(0) probably_damaging(0.988) TCGA-EW-A2FR-01 11 88033799 88033799 G A CTSC Missense_Mutation p.P219L 0.11 deleterious(0.03) benign(0.053) TCGA-EW-A2FR-01 12 133202330 133202330 G A POLE Silent p.L2186L 0.21 TCGA-EW-A2FR-01 13 60544098 60544098 G A DIAPH3 Missense_Mutation p.T685I 0.24 tolerated(0.09) benign(0.019) TCGA-EW-A2FR-01 14 20345024 20345024 A G OR4K2 Missense_Mutation p.I200V 0.13 tolerated(0.57) benign(0.252) TCGA-EW-A2FR-01 15 27188500 27188500 C G GABRA5 Missense_Mutation p.A339G 0.10 tolerated(0.11) probably_damaging(0.999) TCGA-EW-A2FR-01 16 11374884 11374884 G A PRM1 Missense_Mutation p.R41C 0.34 unknown(0) TCGA-EW-A2FR-01 16 55719076 55719076 C T SLC6A2 Silent p.H222H 0.16 TCGA-EW-A2FR-01 17 18250903 18250903 G T SHMT1 Missense_Mutation p.D142E 0.16 deleterious(0) probably_damaging(0.953) TCGA-EW-A2FR-01 17 37871605 37871605 G C ERBB2 Missense_Mutation p.E405D 0.05 deleterious(0.03) benign(0.264) TCGA-EW-A2FR-01 17 38643606 38643606 A C TNS4 Missense_Mutation p.S324A 0.24 tolerated(0.28) benign(0.01) TCGA-EW-A2FR-01 17 41246452 41246452 C T BRCA1 Missense_Mutation p.D366N 0.19 tolerated(0.19) possibly_damaging(0.835) TCGA-EW-A2FR-01 17 61391823 61391823 G C TANC2 Missense_Mutation p.E338Q 0.33 deleterious(0) benign(0.12) TCGA-EW-A2FR-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.24 tolerated(0.11) benign(0.308) TCGA-EW-A2FR-01 17 8192452 8192452 C G SLC25A35 3'UTR 0.30 TCGA-EW-A2FR-01 19 17438641 17438641 C A ANO8 Missense_Mutation p.V759L 0.27 tolerated(0.05) possibly_damaging(0.472) TCGA-EW-A2FR-01 19 17937492 17937492 C T JAK3 3'UTR 0.14 TCGA-EW-A2FR-01 19 38230548 38230548 C A ZNF573 Missense_Mutation p.K281N 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-EW-A2FR-01 19 38230680 38230680 C G ZNF573 Missense_Mutation p.E237D 0.22 deleterious(0) possibly_damaging(0.763) TCGA-EW-A2FR-01 19 42473007 42473007 C T ATP1A3 Missense_Mutation p.V930I 0.17 deleterious(0.04) probably_damaging(0.993) TCGA-EW-A2FR-01 19 50931310 50931310 T G SPIB Missense_Mutation p.L169R 0.15 deleterious(0) probably_damaging(0.995) TCGA-EW-A2FR-01 19 53086136 53086136 G T ZNF701 Missense_Mutation p.C341F 0.31 deleterious(0) probably_damaging(0.994) TCGA-EW-A2FR-01 1 114456169 114456169 G A DCLRE1B 3'UTR 0.12 TCGA-EW-A2FR-01 1 153275044 153275044 C G PGLYRP3 Missense_Mutation p.R190T 0.06 tolerated(0.08) probably_damaging(0.919) TCGA-EW-A2FR-01 1 159901653 159901653 G A IGSF9 Silent p.L437L 0.13 TCGA-EW-A2FR-01 1 160178378 160178378 C G PEA15 Intron 0.35 TCGA-EW-A2FR-01 20 2297850 2297850 G A TGM3 Missense_Mutation p.R269Q 0.08 tolerated(0.21) benign(0.237) TCGA-EW-A2FR-01 22 18072925 18072925 A G SLC25A18 Missense_Mutation p.I291V 0.14 tolerated(0.07) benign(0.143) TCGA-EW-A2FR-01 3 113367795 113367795 C G KIAA2018 3'UTR 0.12 TCGA-EW-A2FR-01 3 57898911 57898911 T C SLMAP Missense_Mutation p.W649R 0.38 tolerated_low_confidence(0.35) possibly_damaging(0.726) TCGA-EW-A2FR-01 4 17816953 17816953 C T NCAPG Silent p.L249L 0.22 TCGA-EW-A2FR-01 4 2306739 2306739 C T ZFYVE28 Missense_Mutation p.G443E 0.10 tolerated_low_confidence(0.58) benign(0.002) TCGA-EW-A2FR-01 5 79027410 79027410 A T CMYA5 Missense_Mutation p.D941V 0.17 probably_damaging(0.99) TCGA-EW-A2FR-01 7 17879459 17879459 C T SNX13 Missense_Mutation p.G444R 0.12 tolerated(0.09) possibly_damaging(0.777) TCGA-EW-A2FR-01 7 30692983 30692983 T A CRHR2 3'UTR 0.11 TCGA-EW-A2FR-01 7 38370211 38370211 G A TRGV8 Silent p.V29V 0.13 TCGA-EW-A2FR-01 8 124238725 124238725 G A ZHX1-C8ORF76 Silent p.L289L 0.08 TCGA-EW-A2FR-01 8 37730535 37730535 G A RAB11FIP1 Silent p.F595F 0.38 TCGA-EW-A2FR-01 8 55542413 55542413 C A RP1 Missense_Mutation p.Q1991K 0.14 tolerated(0.51) benign(0.008) TCGA-EW-A2FR-01 8 62588872 62588872 G C ASPH Intron 0.25 TCGA-EW-A2FR-01 8 77768240 77768240 C A ZFHX4 Missense_Mutation p.S3028Y 0.14 probably_damaging(0.994) TCGA-EW-A2FR-01 9 131019529 131019529 C T GOLGA2 Silent p.V942V 0.09 TCGA-EW-A2FR-01 9 40772576 40772576 T C ZNF658 Missense_Mutation p.H900R 0.19 deleterious(0) probably_damaging(0.977) TCGA-EW-A2FR-01 9 97522585 97522585 C T C9orf3 Missense_Mutation p.P174S 0.11 tolerated(0.36) benign(0.002) TCGA-EW-A2FR-01 X 100292961 100292961 G A TRMT2B Missense_Mutation p.T128M 0.10 deleterious(0.04) benign(0.201) TCGA-EW-A2FR-01 X 105449660 105449660 C G MUM1L1 Missense_Mutation p.P79A 0.25 tolerated(0.7) benign(0.001) TCGA-EW-A2FR-01 X 134711194 134711194 G A DDX26B Missense_Mutation p.S617N 0.17 tolerated(0.38) benign(0.002) TCGA-EW-A2FS-01 10 26442801 26442802 - A MYO3A Frame_Shift_Ins p.N888Kfs*44 0.21 TCGA-EW-A2FS-01 10 70182495 70182495 G A DNA2 Silent p.D873D 0.09 TCGA-EW-A2FS-01 11 63149641 63149641 C G SLC22A9 Missense_Mutation p.S322C 0.16 deleterious(0.01) benign(0.315) TCGA-EW-A2FS-01 11 76246978 76246978 A G C11orf30 Missense_Mutation p.Q745R 0.08 deleterious(0) possibly_damaging(0.775) TCGA-EW-A2FS-01 12 108150667 108150667 G C PRDM4 Silent p.V29V 0.29 TCGA-EW-A2FS-01 12 52200943 52200943 T C SCN8A Silent p.R1891R 0.15 TCGA-EW-A2FS-01 13 46358082 46358082 G C SIAH3 Silent p.R82R 0.23 TCGA-EW-A2FS-01 14 23826504 23826504 C T EFS Silent p.V539V 0.33 TCGA-EW-A2FS-01 15 23002969 23002969 G A CYFIP1 Missense_Mutation p.G1231R 0.40 tolerated(0.56) benign(0.012) TCGA-EW-A2FS-01 15 43237430 43237430 C A UBR1 3'UTR 0.11 TCGA-EW-A2FS-01 16 1797211 1797211 G A MAPK8IP3 Missense_Mutation p.R309Q 0.17 tolerated(0.46) benign(0.006) TCGA-EW-A2FS-01 17 18863896 18863896 C T SLC5A10 Silent p.Y128Y 0.12 TCGA-EW-A2FS-01 17 38447837 38447837 A - CDC6 Frame_Shift_Del p.A195Lfs*18 0.50 TCGA-EW-A2FS-01 17 46607829 46607829 G A HOXB1 Silent p.N146N 0.25 TCGA-EW-A2FS-01 17 56283731 56283731 C T MKS1 Missense_Mutation p.E501K 0.09 deleterious(0.03) benign(0.24) TCGA-EW-A2FS-01 17 60491174 60491174 C T EFCAB3 Nonsense_Mutation p.Q369* 0.09 TCGA-EW-A2FS-01 17 65184495 65184495 C A HELZ Missense_Mutation p.D368Y 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-EW-A2FS-01 17 72539020 72539020 G A CD300C Silent p.P169P 0.17 TCGA-EW-A2FS-01 18 60036221 60036221 A G TNFRSF11A Silent p.T357T 0.12 TCGA-EW-A2FS-01 19 14748981 14748981 C T EMR3 Missense_Mutation p.V474I 0.24 tolerated(0.25) benign(0.103) TCGA-EW-A2FS-01 19 52443917 52443917 G A ZNF613 Missense_Mutation p.E64K 0.10 tolerated(0.05) benign(0.004) TCGA-EW-A2FS-01 19 6458327 6458327 G A SLC25A23 Silent p.S55S 0.38 TCGA-EW-A2FS-01 1 114680162 114680162 C T SYT6 Silent p.L257L 0.09 TCGA-EW-A2FS-01 1 149902576 149902576 C A MTMR11 Intron 0.50 TCGA-EW-A2FS-01 1 207134288 207134288 A G FCAMR Silent p.S311S 0.23 TCGA-EW-A2FS-01 1 207697254 207697254 G A CR1 Silent p.V262V 0.11 TCGA-EW-A2FS-01 1 230810826 230810826 T C COG2 Silent p.L328L 0.20 TCGA-EW-A2FS-01 1 27100207 27100207 C T ARID1A Nonsense_Mutation p.R1335* 0.44 TCGA-EW-A2FS-01 1 43621936 43621936 T A FAM183A Silent p.T119T 0.14 TCGA-EW-A2FS-01 1 89662872 89662872 G A GBP4 Silent p.P52P 0.30 TCGA-EW-A2FS-01 1 92187640 92187640 A G TGFBR3 Missense_Mutation p.I316T 0.10 tolerated(0.75) benign(0.007) TCGA-EW-A2FS-01 2 152534685 152534685 T C NEB Missense_Mutation p.D1091G 0.26 benign(0.437) TCGA-EW-A2FS-01 2 178097922 178097943 GTTATTTTATAGTTATGATGGA - NFE2L2 Intron 0.23 TCGA-EW-A2FS-01 2 217364721 217364722 - GAA RPL37A In_Frame_Ins p.K62dup 0.53 TCGA-EW-A2FS-01 2 96521886 96521886 G A ANKRD36C Missense_Mutation p.R402C 0.19 tolerated(0.17) benign(0.193) TCGA-EW-A2FS-01 3 108287008 108287008 A C KIAA1524 Missense_Mutation p.L423V 0.08 deleterious(0.01) benign(0.366) TCGA-EW-A2FS-01 3 46245419 46245419 A T CCR1 Missense_Mutation p.I129N 0.44 deleterious(0) probably_damaging(0.963) TCGA-EW-A2FS-01 5 101735276 101735276 G T SLCO6A1 Silent p.I599I 0.11 TCGA-EW-A2FS-01 5 90024635 90024635 G A GPR98 Nonsense_Mutation p.W3437* 0.08 TCGA-EW-A2FS-01 6 2890539 2890539 G A SERPINB9 Missense_Mutation p.A330V 0.44 tolerated(0.06) benign(0.226) TCGA-EW-A2FS-01 6 33744768 33744768 G T LEMD2 Missense_Mutation p.L442M 0.10 tolerated(0.2) possibly_damaging(0.832) TCGA-EW-A2FS-01 6 46623636 46623636 C A SLC25A27 Missense_Mutation p.L55I 0.12 tolerated(0.41) benign(0.14) TCGA-EW-A2FS-01 7 100678652 100678652 C T MUC17 Missense_Mutation p.P1319S 0.18 unknown(0) TCGA-EW-A2FS-01 7 127975655 127975655 A G RBM28 Silent p.I296I 0.09 TCGA-EW-A2FS-01 7 2262357 2262357 C T MAD1L1 Silent p.T108T 0.38 TCGA-EW-A2FS-01 7 74105442 74105442 T C GTF2I Silent p.Y79Y 0.22 TCGA-EW-A2FS-01 8 133848802 133848802 T C PHF20L1 Missense_Mutation p.F643L 0.09 tolerated(0.09) probably_damaging(0.983) TCGA-EW-A2FS-01 X 123663729 123663729 C A TENM1 Missense_Mutation p.S919I 0.16 deleterious(0) probably_damaging(0.969) TCGA-EW-A2FS-01 X 51487776 51487776 G A GSPT2 Missense_Mutation p.D352N 0.11 deleterious(0) probably_damaging(1) TCGA-EW-A2FV-01 10 100143499 100143499 G - PYROXD2 3'UTR 0.12 TCGA-EW-A2FV-01 10 100167730 100167730 C - PYROXD2 Frame_Shift_Del p.V58* 0.11 TCGA-EW-A2FV-01 10 100185328 100185328 A - HPS1 Frame_Shift_Del p.F435Lfs*40 0.11 TCGA-EW-A2FV-01 10 101439116 101439116 T - ENTPD7 Frame_Shift_Del p.F98Lfs*21 0.08 TCGA-EW-A2FV-01 10 101914621 101914621 T - ERLIN1 Frame_Shift_Del p.N274Tfs*5 0.09 TCGA-EW-A2FV-01 10 101996633 101996633 T - CWF19L1 Frame_Shift_Del p.I450Sfs*103 0.08 TCGA-EW-A2FV-01 10 102257800 102257800 T - SEC31B Frame_Shift_Del p.T617Pfs*7 0.09 TCGA-EW-A2FV-01 10 102732723 102732723 C - SEMA4G Frame_Shift_Del p.P19Qfs*12 0.12 TCGA-EW-A2FV-01 10 102798436 102798436 C - SFXN3 Frame_Shift_Del p.L274Wfs*25 0.09 TCGA-EW-A2FV-01 10 103587105 103587105 G - KCNIP2 3'Flank 0.13 TCGA-EW-A2FV-01 10 103900444 103900444 A - PPRC1 Frame_Shift_Del p.E728Rfs*6 0.10 TCGA-EW-A2FV-01 10 103987395 103987395 C - ELOVL3 Frame_Shift_Del p.I40* 0.10 TCGA-EW-A2FV-01 10 104128061 104128061 C - GBF1 Frame_Shift_Del p.P910Lfs*20 0.10 TCGA-EW-A2FV-01 10 104163663 104163663 C - PSD Frame_Shift_Del p.G927Afs*37 0.16 TCGA-EW-A2FV-01 10 104572699 104572699 A - WBP1L Frame_Shift_Del p.D236Mfs*9 0.11 TCGA-EW-A2FV-01 10 104849414 104849414 T - NT5C2 3'UTR 0.11 TCGA-EW-A2FV-01 10 104854138 104854138 A - NT5C2 Frame_Shift_Del p.F296Lfs*17 0.12 TCGA-EW-A2FV-01 10 105160213 105160213 A - PDCD11 Frame_Shift_Del p.K56Sfs*2 0.09 TCGA-EW-A2FV-01 10 105173019 105173019 T - PDCD11 Frame_Shift_Del p.F377Sfs*10 0.09 TCGA-EW-A2FV-01 10 105176293 105176293 A - PDCD11 Frame_Shift_Del p.T524Pfs*2 0.08 TCGA-EW-A2FV-01 10 105204317 105204317 G - PDCD11 Frame_Shift_Del p.D1776Mfs*13 0.09 TCGA-EW-A2FV-01 10 105362108 105362108 C - SH3PXD2A Frame_Shift_Del p.G928Afs*11 0.18 TCGA-EW-A2FV-01 10 105939606 105939606 T - WDR96 Frame_Shift_Del p.S792Afs*19 0.08 TCGA-EW-A2FV-01 10 105963463 105963463 G - WDR96 Frame_Shift_Del p.N355Ifs*6 0.09 TCGA-EW-A2FV-01 10 106034992 106034992 C - GSTO2 Frame_Shift_Del p.P16Qfs*8 0.19 TCGA-EW-A2FV-01 10 106865198 106865198 A - SORCS3 Frame_Shift_Del p.T380Lfs*26 0.10 TCGA-EW-A2FV-01 10 1088586 1088586 T - IDI1 Frame_Shift_Del p.I175Ffs*14 0.09 TCGA-EW-A2FV-01 10 111652795 111652795 A - XPNPEP1 Frame_Shift_Del p.F95Lfs*42 0.12 TCGA-EW-A2FV-01 10 111883867 111883867 T - ADD3 Frame_Shift_Del p.S414Pfs*27 0.11 TCGA-EW-A2FV-01 10 112327566 112327566 C - SMC3 5'UTR 0.09 TCGA-EW-A2FV-01 10 114173052 114173052 G - ACSL5 Frame_Shift_Del p.I414Sfs*13 0.09 TCGA-EW-A2FV-01 10 115368250 115368250 G - NRAP Frame_Shift_Del p.H1209Tfs*8 0.09 TCGA-EW-A2FV-01 10 115388701 115388701 T - NRAP Frame_Shift_Del p.K707Rfs*19 0.09 TCGA-EW-A2FV-01 10 115970683 115970683 T - TDRD1 Frame_Shift_Del p.Y541Ifs*37 0.09 TCGA-EW-A2FV-01 10 116070151 116070151 G - AFAP1L2 Frame_Shift_Del p.Q282Sfs*16 0.08 TCGA-EW-A2FV-01 10 116730134 116730134 A - TRUB1 Frame_Shift_Del p.T178Hfs*16 0.08 TCGA-EW-A2FV-01 10 117824005 117824005 T - GFRA1 Frame_Shift_Del p.K434Nfs*11 0.08 TCGA-EW-A2FV-01 10 117849317 117849317 G - GFRA1 Frame_Shift_Del p.L378Wfs*26 0.10 TCGA-EW-A2FV-01 10 118443456 118443456 G - HSPA12A Frame_Shift_Del p.E228Rfs*27 0.13 TCGA-EW-A2FV-01 10 118728182 118728182 T - KIAA1598 Frame_Shift_Del p.K51Nfs*13 0.09 TCGA-EW-A2FV-01 10 118969524 118969524 T - KCNK18 Frame_Shift_Del p.F291Lfs*41 0.08 TCGA-EW-A2FV-01 10 120797857 120797857 T - EIF3A Frame_Shift_Del p.E1208Kfs*76 0.08 TCGA-EW-A2FV-01 10 120920446 120920446 G - SFXN4 Frame_Shift_Del p.K106Sfs*20 0.10 TCGA-EW-A2FV-01 10 121580402 121580402 T - INPP5F Frame_Shift_Del p.S645Lfs*17 0.08 TCGA-EW-A2FV-01 10 121587009 121587009 C - INPP5F Frame_Shift_Del p.T1041Pfs*15 0.10 TCGA-EW-A2FV-01 10 123325088 123325088 C - FGFR2 Frame_Shift_Del p.N82Tfs*13 0.08 TCGA-EW-A2FV-01 10 123673353 123673353 T - ATE1 Frame_Shift_Del p.M97Cfs*2 0.10 TCGA-EW-A2FV-01 10 123733678 123733678 A - NSMCE4A Intron 0.15 TCGA-EW-A2FV-01 10 124183776 124183776 A - PLEKHA1 Frame_Shift_Del p.S249Afs*3 0.10 TCGA-EW-A2FV-01 10 124189380 124189380 A - PLEKHA1 Frame_Shift_Del p.N382Mfs*10 0.11 TCGA-EW-A2FV-01 10 124345835 124345835 C - DMBT1 Frame_Shift_Del p.H575Tfs*28 0.10 TCGA-EW-A2FV-01 10 124350184 124350184 C - DMBT1 Frame_Shift_Del p.Q705Sfs*21 0.09 TCGA-EW-A2FV-01 10 124402731 124402731 C - DMBT1 Frame_Shift_Del p.S2355Pfs*26 0.09 TCGA-EW-A2FV-01 10 126686724 126686724 T - CTBP2 Frame_Shift_Del p.N665Tfs*134 0.14 TCGA-EW-A2FV-01 10 126715058 126715058 G - CTBP2 Frame_Shift_Del p.P424Lfs*24 0.15 TCGA-EW-A2FV-01 10 127500832 127500832 T - UROS Frame_Shift_Del p.K90Nfs*17 0.09 TCGA-EW-A2FV-01 10 127731622 127731622 G - ADAM12 Frame_Shift_Del p.I701Sfs*9 0.10 TCGA-EW-A2FV-01 10 127731639 127731639 T - ADAM12 Frame_Shift_Del p.S695Afs*15 0.09 TCGA-EW-A2FV-01 10 127824193 127824193 A - ADAM12 Frame_Shift_Del p.S129Lfs*26 0.08 TCGA-EW-A2FV-01 10 128904507 128904507 A - DOCK1 Frame_Shift_Del p.K799Nfs*10 0.11 TCGA-EW-A2FV-01 10 129845931 129845931 T - PTPRE Intron 0.09 TCGA-EW-A2FV-01 10 129868044 129868044 T - PTPRE Frame_Shift_Del p.F366Lfs*68 0.10 TCGA-EW-A2FV-01 10 13158315 13158315 C - OPTN Frame_Shift_Del p.T202Rfs*30 0.15 TCGA-EW-A2FV-01 10 13251154 13251154 T - MCM10 Intron 0.09 TCGA-EW-A2FV-01 10 13336512 13336512 T - PHYH Frame_Shift_Del p.E110Dfs*8 0.10 TCGA-EW-A2FV-01 10 134022549 134022549 A - STK32C Frame_Shift_Del p.F436Lfs*6 0.09 TCGA-EW-A2FV-01 10 134059430 134059430 C - STK32C Frame_Shift_Del p.A98Pfs*24 0.15 TCGA-EW-A2FV-01 10 134166456 134166456 T - LRRC27 Intron 0.09 TCGA-EW-A2FV-01 10 134650325 134650325 C - TTC40 Frame_Shift_Del p.D2178Tfs*32 0.13 TCGA-EW-A2FV-01 10 135032453 135032453 C - KNDC1 Frame_Shift_Del p.P1600Lfs*10 0.08 TCGA-EW-A2FV-01 10 13522956 13522956 T - BEND7 Frame_Shift_Del p.R284Efs*10 0.09 TCGA-EW-A2FV-01 10 13541799 13541799 G - BEND7 Frame_Shift_Del p.H91Tfs*13 0.10 TCGA-EW-A2FV-01 10 135440233 135440233 T - FRG2B Frame_Shift_Del p.N5Mfs*96 0.09 TCGA-EW-A2FV-01 10 13735938 13735938 C - FRMD4A Frame_Shift_Del p.K360Rfs*32 0.08 TCGA-EW-A2FV-01 10 15573109 15573109 A - ITGA8 Frame_Shift_Del p.F974Lfs*20 0.09 TCGA-EW-A2FV-01 10 18196551 18196551 T - MRC1 Frame_Shift_Del p.L1335Yfs*57 0.10 TCGA-EW-A2FV-01 10 18803956 18803956 T - CACNB2 Intron 0.10 TCGA-EW-A2FV-01 10 23248007 23248007 A - ARMC3 Frame_Shift_Del p.K102Nfs*3 0.09 TCGA-EW-A2FV-01 10 24835098 24835098 T - KIAA1217 Frame_Shift_Del p.S1894Pfs*13 0.11 TCGA-EW-A2FV-01 10 27328926 27328926 T - ANKRD26 Frame_Shift_Del p.V782Lfs*10 0.09 TCGA-EW-A2FV-01 10 27337896 27337896 T - ANKRD26 Frame_Shift_Del p.R550Gfs*32 0.08 TCGA-EW-A2FV-01 10 27539318 27539318 G - RP11-85G18.6 RNA 0.12 TCGA-EW-A2FV-01 10 29788050 29788050 T - SVIL Frame_Shift_Del p.K1220Rfs*10 0.09 TCGA-EW-A2FV-01 10 29788180 29788180 T - SVIL Frame_Shift_Del p.S1177Vfs*6 0.09 TCGA-EW-A2FV-01 10 30900902 30900902 T - LYZL2 Frame_Shift_Del p.D190Tfs*19 0.09 TCGA-EW-A2FV-01 10 3187801 3187801 G - PITRM1 Frame_Shift_Del p.P816Hfs*39 0.14 TCGA-EW-A2FV-01 10 32103231 32103231 T - ARHGAP12 Frame_Shift_Del p.K597Sfs*22 0.10 TCGA-EW-A2FV-01 10 32307030 32307030 T - KIF5B Frame_Shift_Del p.I832Sfs*43 0.08 TCGA-EW-A2FV-01 10 32581470 32581470 T - EPC1 Frame_Shift_Del p.S257Vfs*8 0.08 TCGA-EW-A2FV-01 10 375435 375435 A - DIP2C Frame_Shift_Del p.C1231Afs*5 0.08 TCGA-EW-A2FV-01 10 38344897 38344897 A - ZNF33A Frame_Shift_Del p.A617Pfs*16 0.08 TCGA-EW-A2FV-01 10 43607631 43607631 C - RET Frame_Shift_Del p.P537Qfs*101 0.11 TCGA-EW-A2FV-01 10 43610035 43610035 T - RET Frame_Shift_Del p.F663Lfs*12 0.09 TCGA-EW-A2FV-01 10 43883114 43883114 T - HNRNPF Frame_Shift_Del p.D74Tfs*24 0.09 TCGA-EW-A2FV-01 10 45480285 45480285 C - RASSF4 Frame_Shift_Del p.Q135Sfs*2 0.15 TCGA-EW-A2FV-01 10 46233480 46233480 A - FAM21C Frame_Shift_Del p.T116Qfs*12 0.08 TCGA-EW-A2FV-01 10 46261134 46261134 T - FAM21C Frame_Shift_Del p.F583Lfs*53 0.09 TCGA-EW-A2FV-01 10 46265045 46265045 T - FAM21C Frame_Shift_Del p.F674Lfs*66 0.09 TCGA-EW-A2FV-01 10 46967630 46967630 C - SYT15 Frame_Shift_Del p.R150Gfs*19 0.16 TCGA-EW-A2FV-01 10 47000010 47000010 C - GPRIN2 Frame_Shift_Del p.P378Lfs*12 0.09 TCGA-EW-A2FV-01 10 48414131 48414131 G - GDF2 Frame_Shift_Del p.P246Qfs*27 0.11 TCGA-EW-A2FV-01 10 48414194 48414194 T - GDF2 Frame_Shift_Del p.K225Sfs*4 0.09 TCGA-EW-A2FV-01 10 48414282 48414282 C - GDF2 Frame_Shift_Del p.D196Tfs*16 0.09 TCGA-EW-A2FV-01 10 49997978 49997978 C - WDFY4 Frame_Shift_Del p.H1339Tfs*17 0.09 TCGA-EW-A2FV-01 10 50736555 50736555 T - ERCC6-PGBD3 Frame_Shift_Del p.K187Rfs*18 0.10 TCGA-EW-A2FV-01 10 50740926 50740926 T - ERCC6-PGBD3 Frame_Shift_Del p.M29Wfs*55 0.13 TCGA-EW-A2FV-01 10 50873042 50873042 T - CHAT Frame_Shift_Del p.L733Wfs*21 0.14 TCGA-EW-A2FV-01 10 50955123 50955123 C - OGDHL Frame_Shift_Del p.K374Rfs*40 0.10 TCGA-EW-A2FV-01 10 51464875 51464875 C - AGAP7 Frame_Shift_Del p.R528Gfs*65 0.09 TCGA-EW-A2FV-01 10 51555796 51555796 T - MSMB Frame_Shift_Del p.F24Sfs*25 0.08 TCGA-EW-A2FV-01 10 51885877 51885877 A - FAM21A Frame_Shift_Del p.K917Nfs*45 0.12 TCGA-EW-A2FV-01 10 52580369 52580369 A - A1CF Frame_Shift_Del p.F278Lfs*14 0.09 TCGA-EW-A2FV-01 10 52834270 52834270 G - PRKG1 5'UTR 0.10 TCGA-EW-A2FV-01 10 55912933 55912933 C - PCDH15 Frame_Shift_Del p.V571Wfs*3 0.12 TCGA-EW-A2FV-01 10 5765686 5765686 A - FAM208B Frame_Shift_Del p.R67Dfs*29 0.09 TCGA-EW-A2FV-01 10 5995106 5995106 C - IL15RA Frame_Shift_Del p.T253Pfs*24 0.11 TCGA-EW-A2FV-01 10 60127683 60127683 T - UBE2D1 Frame_Shift_Del p.L103Yfs*17 0.08 TCGA-EW-A2FV-01 10 61083747 61083747 C - FAM13C Splice_Site p.X148_splice 0.11 TCGA-EW-A2FV-01 10 61829858 61829858 G - ANK3 Frame_Shift_Del p.P3594Qfs*18 0.09 TCGA-EW-A2FV-01 10 61830872 61830872 G - ANK3 Frame_Shift_Del p.P3256Lfs*26 0.11 TCGA-EW-A2FV-01 10 62645920 62645920 A - RHOBTB1 Frame_Shift_Del p.W509Gfs*23 0.13 TCGA-EW-A2FV-01 10 69571391 69571391 T - DNAJC12 Frame_Shift_Del p.K63Rfs*4 0.09 TCGA-EW-A2FV-01 10 70515209 70515209 A - CCAR1 Frame_Shift_Del p.D516Ifs*5 0.11 TCGA-EW-A2FV-01 10 70532819 70532819 C - CCAR1 Frame_Shift_Del p.P872Lfs*19 0.09 TCGA-EW-A2FV-01 10 71016884 71016884 A - HKDC1 Frame_Shift_Del p.N644Tfs*11 0.09 TCGA-EW-A2FV-01 10 71146105 71146105 T - HK1 Frame_Shift_Del p.F627Lfs*11 0.09 TCGA-EW-A2FV-01 10 71648069 71648069 G - COL13A1 Frame_Shift_Del p.L179Wfs*16 0.10 TCGA-EW-A2FV-01 10 72503882 72503882 G - ADAMTS14 Frame_Shift_Del p.G711Vfs*9 0.15 TCGA-EW-A2FV-01 10 72511306 72511306 C - ADAMTS14 Frame_Shift_Del p.I839Sfs*77 0.11 TCGA-EW-A2FV-01 10 73048408 73048408 C - UNC5B Frame_Shift_Del p.P330Hfs*31 0.12 TCGA-EW-A2FV-01 10 73051506 73051506 C - UNC5B Frame_Shift_Del p.R539Efs*63 0.15 TCGA-EW-A2FV-01 10 73053311 73053311 C - UNC5B Frame_Shift_Del p.H642Tfs*9 0.14 TCGA-EW-A2FV-01 10 73548744 73548744 C - CDH23 Frame_Shift_Del p.L1963Sfs*11 0.10 TCGA-EW-A2FV-01 10 73550096 73550096 A - CDH23 Frame_Shift_Del p.D1998Tfs*6 0.10 TCGA-EW-A2FV-01 10 74690331 74690331 C - OIT3 Frame_Shift_Del p.R469Gfs*4 0.11 TCGA-EW-A2FV-01 10 74773984 74773984 A - P4HA1 Frame_Shift_Del p.Y456Ifs*2 0.09 TCGA-EW-A2FV-01 10 74899186 74899186 T - ECD Frame_Shift_Del p.E468Nfs*16 0.09 TCGA-EW-A2FV-01 10 75230481 75230481 A - PPP3CB Frame_Shift_Del p.S316Rfs*6 0.08 TCGA-EW-A2FV-01 10 75559820 75559820 C - ZSWIM8 Frame_Shift_Del p.S1574Hfs*44 0.08 TCGA-EW-A2FV-01 10 76468080 76468080 T - ADK Frame_Shift_Del p.L324Cfs*10 0.09 TCGA-EW-A2FV-01 10 77807031 77807031 A - C10orf11 Frame_Shift_Del p.K96Rfs*20 0.15 TCGA-EW-A2FV-01 10 78778801 78778801 A - KCNMA1 Frame_Shift_Del p.F662Sfs*29 0.08 TCGA-EW-A2FV-01 10 79745906 79745906 T - POLR3A Frame_Shift_Del p.K971Nfs*41 0.09 TCGA-EW-A2FV-01 10 81060620 81060620 C - ZMIZ1 Frame_Shift_Del p.H648Tfs*6 0.09 TCGA-EW-A2FV-01 10 81838436 81838436 C - TMEM254 5'UTR 0.19 TCGA-EW-A2FV-01 10 82363459 82363459 C - SH2D4B Frame_Shift_Del p.R257Gfs*103 0.09 TCGA-EW-A2FV-01 10 85910615 85910615 A - GHITM Frame_Shift_Del p.K312Nfs*9 0.10 TCGA-EW-A2FV-01 10 88421110 88421110 C - OPN4 Frame_Shift_Del p.I359Sfs*46 0.08 TCGA-EW-A2FV-01 10 88784388 88784388 C - FAM25A Frame_Shift_Del p.I77Sfs*? 0.08 TCGA-EW-A2FV-01 10 89272945 89272945 T - MINPP1 Frame_Shift_Del p.W301Gfs*7 0.09 TCGA-EW-A2FV-01 10 89550162 89550162 A - ATAD1 Frame_Shift_Del p.L96* 0.09 TCGA-EW-A2FV-01 10 89720712 89720712 A - PTEN Frame_Shift_Del p.V290* 0.08 TCGA-EW-A2FV-01 10 90074284 90074284 T - RNLS Frame_Shift_Del p.N272Tfs*33 0.12 TCGA-EW-A2FV-01 10 93038079 93038079 G - PCGF5 3'UTR 0.12 TCGA-EW-A2FV-01 10 94235714 94235714 A - IDE Frame_Shift_Del p.L641Yfs*2 0.11 TCGA-EW-A2FV-01 10 94366435 94366435 G - KIF11 Frame_Shift_Del p.D91Mfs*45 0.09 TCGA-EW-A2FV-01 10 95095761 95095761 G - MYOF Frame_Shift_Del p.L1494* 0.09 TCGA-EW-A2FV-01 10 95353657 95353657 G - RBP4 Frame_Shift_Del p.P164Qfs*7 0.08 TCGA-EW-A2FV-01 10 95445079 95445079 T - FRA10AC1 Frame_Shift_Del p.E184Kfs*3 0.10 TCGA-EW-A2FV-01 10 95719502 95719502 G - PIPSL RNA 0.10 TCGA-EW-A2FV-01 10 96014722 96014722 C - PLCE1 Frame_Shift_Del p.N1159Tfs*42 0.08 TCGA-EW-A2FV-01 10 96064273 96064273 G - PLCE1 Frame_Shift_Del p.A1832Qfs*9 0.08 TCGA-EW-A2FV-01 10 96702097 96702097 G - CYP2C9 Frame_Shift_Del 0.09 TCGA-EW-A2FV-01 10 96827035 96827035 C - CYP2C8 Frame_Shift_Del p.K138Rfs*19 0.09 TCGA-EW-A2FV-01 10 97626016 97626016 C - ENTPD1 Frame_Shift_Del p.T482Nfs*25 0.09 TCGA-EW-A2FV-01 10 98718230 98718230 A - LCOR 3'UTR 0.09 TCGA-EW-A2FV-01 10 98763868 98763868 G - SLIT1 Frame_Shift_Del p.K1275Nfs*57 0.11 TCGA-EW-A2FV-01 10 99130286 99130286 C - RRP12 Frame_Shift_Del p.G872Afs*18 0.11 TCGA-EW-A2FV-01 10 99358890 99358890 G - HOGA1 Frame_Shift_Del p.A130Lfs*7 0.12 TCGA-EW-A2FV-01 10 99433485 99433485 T - PI4K2A Frame_Shift_Del p.S447Hfs*? 0.09 TCGA-EW-A2FV-01 11 100126562 100126562 C - CNTN5 Frame_Shift_Del p.P693Qfs*27 0.08 TCGA-EW-A2FV-01 11 101771230 101771230 T - ANGPTL5 Frame_Shift_Del p.R198Efs*5 0.08 TCGA-EW-A2FV-01 11 1019383 1019383 C - MUC6 Frame_Shift_Del p.A1308Pfs*22 0.11 TCGA-EW-A2FV-01 11 1021219 1021219 G - MUC6 Frame_Shift_Del p.C1196Afs*28 0.15 TCGA-EW-A2FV-01 11 10215465 10215465 G - SBF2 Frame_Shift_Del p.P42Hfs*29 0.08 TCGA-EW-A2FV-01 11 102738114 102738114 T - MMP12 RNA 0.09 TCGA-EW-A2FV-01 11 102816377 102816377 T - MMP13 Frame_Shift_Del p.N438Mfs*51 0.11 TCGA-EW-A2FV-01 11 103151129 103151129 T - DYNC2H1 Frame_Shift_Del p.Q3592Kfs*34 0.09 TCGA-EW-A2FV-01 11 103349884 103349884 A - DYNC2H1 Frame_Shift_Del p.R4284Gfs*28 0.08 TCGA-EW-A2FV-01 11 10518446 10518446 C - AMPD3 Frame_Shift_Del p.Q517Kfs*13 0.12 TCGA-EW-A2FV-01 11 105924274 105924274 T - KBTBD3 Frame_Shift_Del p.N381Mfs*9 0.10 TCGA-EW-A2FV-01 11 10625955 10625955 A - MRVI1 Frame_Shift_Del p.T581Rfs*40 0.10 TCGA-EW-A2FV-01 11 10628299 10628299 T - MRVI1 Frame_Shift_Del p.K531Rfs*34 0.09 TCGA-EW-A2FV-01 11 106558319 106558319 A - GUCY1A2 Frame_Shift_Del p.S750Pfs*69 0.09 TCGA-EW-A2FV-01 11 107462697 107462697 T - AP000889.3 Frame_Shift_Del p.F72Sfs*21 0.11 TCGA-EW-A2FV-01 11 10778311 10778311 C - CTR9 Frame_Shift_Del p.F174Sfs*29 0.10 TCGA-EW-A2FV-01 11 108004588 108004588 T - ACAT1 Frame_Shift_Del p.L56* 0.09 TCGA-EW-A2FV-01 11 108056191 108056191 T - NPAT Frame_Shift_Del p.I253Yfs*2 0.09 TCGA-EW-A2FV-01 11 108114808 108114808 T - ATM Frame_Shift_Del p.L210Wfs*20 0.09 TCGA-EW-A2FV-01 11 10819332 10819332 T - EIF4G2 3'UTR 0.10 TCGA-EW-A2FV-01 11 108196880 108196880 A - ATM Frame_Shift_Del p.K2303Rfs*7 0.09 TCGA-EW-A2FV-01 11 108224542 108224542 T - ATM Frame_Shift_Del p.F2908Lfs*30 0.09 TCGA-EW-A2FV-01 11 1092550 1092550 C - MUC2 Frame_Shift_Del p.P1457Qfs*2 0.11 TCGA-EW-A2FV-01 11 1092688 1092688 C - MUC2 Frame_Shift_Del p.P1503Qfs*44 0.09 TCGA-EW-A2FV-01 11 110457015 110457015 G A ARHGAP20 Missense_Mutation p.S447L 0.22 tolerated(0.11) benign(0.231) TCGA-EW-A2FV-01 11 111228221 111228221 C - POU2AF1 Frame_Shift_Del p.S137Pfs*4 0.12 TCGA-EW-A2FV-01 11 111594692 111594692 C - SIK2 Frame_Shift_Del p.Q874Rfs*4 0.13 TCGA-EW-A2FV-01 11 111608230 111608230 G - PPP2R1B Frame_Shift_Del p.P618Lfs*42 0.08 TCGA-EW-A2FV-01 11 111853109 111853109 T C DIXDC1 Silent p.P271P 0.13 TCGA-EW-A2FV-01 11 112086980 112086980 T - BCO2 Frame_Shift_Del p.F519Lfs*19 0.10 TCGA-EW-A2FV-01 11 113113539 113113539 T - NCAM1 Intron 0.10 TCGA-EW-A2FV-01 11 113577047 113577047 T - TMPRSS5 5'UTR 0.09 TCGA-EW-A2FV-01 11 113699949 113699949 G - USP28 Frame_Shift_Del p.S344Pfs*5 0.09 TCGA-EW-A2FV-01 11 114117919 114117919 G - ZBTB16 Splice_Site p.X542_splice 0.10 TCGA-EW-A2FV-01 11 114183021 114183021 T - NNMT Frame_Shift_Del p.I206Mfs*16 0.09 TCGA-EW-A2FV-01 11 115047151 115047151 A - CADM1 3'UTR 0.09 TCGA-EW-A2FV-01 11 117165885 117165885 C - BACE1 Frame_Shift_Del p.E177Kfs*26 0.08 TCGA-EW-A2FV-01 11 117301514 117301514 G - DSCAML1 Frame_Shift_Del p.A1931Pfs*74 0.09 TCGA-EW-A2FV-01 11 117303101 117303101 G - DSCAML1 Frame_Shift_Del p.L1776Sfs*19 0.11 TCGA-EW-A2FV-01 11 117303946 117303946 G - DSCAML1 Frame_Shift_Del p.P1705Lfs*2 0.10 TCGA-EW-A2FV-01 11 117352852 117352852 G - DSCAML1 Frame_Shift_Del p.N856Tfs*13 0.09 TCGA-EW-A2FV-01 11 117376271 117376271 G - DSCAML1 Frame_Shift_Del p.L714Cfs*25 0.08 TCGA-EW-A2FV-01 11 117651305 117651305 G - DSCAML1 Frame_Shift_Del p.S150Pfs*129 0.10 TCGA-EW-A2FV-01 11 117710471 117710471 C - FXYD6 Intron 0.10 TCGA-EW-A2FV-01 11 117772967 117772967 A - TMPRSS13 Frame_Shift_Del p.F564Sfs*18 0.16 TCGA-EW-A2FV-01 11 117789178 117789178 G - TMPRSS13 Frame_Shift_Del p.R133Dfs*87 0.10 TCGA-EW-A2FV-01 11 117988035 117988035 C - TMPRSS4 Frame_Shift_Del p.L391* 0.10 TCGA-EW-A2FV-01 11 118037689 118037689 T - SCN2B Frame_Shift_Del p.E188Sfs*4 0.09 TCGA-EW-A2FV-01 11 118071231 118071231 G - AMICA1 Frame_Shift_Del p.P290Lfs*3 0.13 TCGA-EW-A2FV-01 11 118347596 118347596 C - KMT2A Frame_Shift_Del p.G1080Afs*14 0.08 TCGA-EW-A2FV-01 11 118366603 118366603 T - KMT2A Frame_Shift_Del p.L1852* 0.09 TCGA-EW-A2FV-01 11 118369199 118369199 A - KMT2A Frame_Shift_Del p.V1975Yfs*9 0.17 TCGA-EW-A2FV-01 11 118376857 118376857 C - KMT2A Frame_Shift_Del p.S3419Lfs*5 0.14 TCGA-EW-A2FV-01 11 118495736 118495736 G - PHLDB1 Frame_Shift_Del p.G149Afs*19 0.10 TCGA-EW-A2FV-01 11 118939934 118939939 CACGTT GCGTTC VPS11 Missense_Mutation p.PRS72RVP 0.14 TCGA-EW-A2FV-01 11 118942529 118942529 C - VPS11 Frame_Shift_Del p.R287Vfs*24 0.10 TCGA-EW-A2FV-01 11 119001515 119001515 T - HINFP Frame_Shift_Del p.F88Sfs*8 0.10 TCGA-EW-A2FV-01 11 119545326 119545326 C - PVRL1 Intron 0.12 TCGA-EW-A2FV-01 11 120310862 120310862 C - ARHGEF12 Frame_Shift_Del p.S343Qfs*4 0.09 TCGA-EW-A2FV-01 11 120998745 120998745 A - TECTA Frame_Shift_Del p.N687Tfs*54 0.12 TCGA-EW-A2FV-01 11 121429341 121429341 T - SORL1 Frame_Shift_Del p.Y903Ifs*18 0.10 TCGA-EW-A2FV-01 11 121461855 121461855 C - SORL1 Frame_Shift_Del p.L1455Cfs*58 0.09 TCGA-EW-A2FV-01 11 122850078 122850078 A - BSX Frame_Shift_Del p.F117Sfs*38 0.09 TCGA-EW-A2FV-01 11 122944212 122944212 G - CLMP Frame_Shift_Del p.S365Afs*15 0.09 TCGA-EW-A2FV-01 11 122968557 122968557 T - CLMP Frame_Shift_Del p.D45Tfs*19 0.08 TCGA-EW-A2FV-01 11 123480523 123480523 A - GRAMD1B Frame_Shift_Del p.K418Rfs*10 0.08 TCGA-EW-A2FV-01 11 12376389 12376389 A - MICALCL Frame_Shift_Del p.M631Cfs*13 0.12 TCGA-EW-A2FV-01 11 123900648 123900648 G - OR10G8 Frame_Shift_Del p.G108Afs*27 0.08 TCGA-EW-A2FV-01 11 124189545 124189545 G - OR8D2 Frame_Shift_Del p.L184Yfs*2 0.08 TCGA-EW-A2FV-01 11 124500740 124500740 A - TBRG1 Frame_Shift_Del p.K313Nfs*8 0.10 TCGA-EW-A2FV-01 11 124618575 124618575 C - VSIG2 Frame_Shift_Del p.G224Afs*7 0.09 TCGA-EW-A2FV-01 11 124873835 124873835 A - CCDC15 Frame_Shift_Del p.E764Kfs*12 0.08 TCGA-EW-A2FV-01 11 12499491 12499491 T - PARVA Frame_Shift_Del p.F173Sfs*9 0.10 TCGA-EW-A2FV-01 11 125497711 125497711 T - CHEK1 Frame_Shift_Del p.F93Lfs*4 0.13 TCGA-EW-A2FV-01 11 125781273 125781273 T - DDX25 Frame_Shift_Del p.F231Lfs*3 0.10 TCGA-EW-A2FV-01 11 125880300 125880300 C - CDON Frame_Shift_Del p.K497Nfs*55 0.10 TCGA-EW-A2FV-01 11 126306717 126306717 A - KIRREL3 Frame_Shift_Del p.L514Pfs*8 0.08 TCGA-EW-A2FV-01 11 126319038 126319038 C - KIRREL3 Frame_Shift_Del p.G288Afs*29 0.17 TCGA-EW-A2FV-01 11 1264579 1264579 C - MUC5B Frame_Shift_Del p.I2158Sfs*5 0.08 TCGA-EW-A2FV-01 11 1265056 1268827 11:1265056-1268827 - MUC5B large deletion p.Q2317Sfs*123 0.11 TCGA-EW-A2FV-01 11 1266083 1266083 C - MUC5B Frame_Shift_Del p.T2660Qfs*3 0.08 TCGA-EW-A2FV-01 11 1267690 1267690 A - MUC5B Frame_Shift_Del p.V3195Cfs*2 0.11 TCGA-EW-A2FV-01 11 1267882 1267882 C - MUC5B Frame_Shift_Del p.T3259Rfs*89 0.10 TCGA-EW-A2FV-01 11 1268355 1268355 C - MUC5B Frame_Shift_Del p.P3417Qfs*3 0.09 TCGA-EW-A2FV-01 11 1269737 1269737 C - MUC5B Frame_Shift_Del p.S3878Pfs*27 0.08 TCGA-EW-A2FV-01 11 1269750 1269750 C - MUC5B Frame_Shift_Del p.P3881Qfs*24 0.09 TCGA-EW-A2FV-01 11 1271938 1271938 G - MUC5B Frame_Shift_Del p.T4611Rfs*27 0.09 TCGA-EW-A2FV-01 11 129722543 129722543 T - TMEM45B Frame_Shift_Del p.S57Pfs*26 0.09 TCGA-EW-A2FV-01 11 129739577 129739577 C - NFRKB Frame_Shift_Del p.A1140Pfs*20 0.09 TCGA-EW-A2FV-01 11 129772199 129772199 G - PRDM10 3'UTR 0.09 TCGA-EW-A2FV-01 11 129772300 129772300 G - PRDM10 Frame_Shift_Del p.Q1131Rfs*37 0.09 TCGA-EW-A2FV-01 11 129788514 129788514 G - PRDM10 Frame_Shift_Del p.R716Afs*18 0.13 TCGA-EW-A2FV-01 11 129794890 129794890 A - PRDM10 Frame_Shift_Del p.C593Afs*11 0.10 TCGA-EW-A2FV-01 11 130332511 130332511 C - ADAMTS15 Frame_Shift_Del p.P460Lfs*99 0.10 TCGA-EW-A2FV-01 11 131781322 131781322 G - NTM 5'Flank 0.12 TCGA-EW-A2FV-01 11 133807747 133807747 C - IGSF9B Frame_Shift_Del p.W173Cfs*16 0.08 TCGA-EW-A2FV-01 11 133814198 133814198 C - IGSF9B Frame_Shift_Del p.G109Afs*51 0.09 TCGA-EW-A2FV-01 11 134252649 134252649 A - B3GAT1 Frame_Shift_Del p.V292Sfs*29 0.11 TCGA-EW-A2FV-01 11 14901708 14901708 A - CYP2R1 Frame_Shift_Del p.F325Sfs*18 0.09 TCGA-EW-A2FV-01 11 15257165 15257165 A - INSC Frame_Shift_Del p.N444Tfs*5 0.09 TCGA-EW-A2FV-01 11 1651757 1651757 C - KRTAP5-5 Frame_Shift_Del p.V231Cfs*20 0.08 TCGA-EW-A2FV-01 11 16816456 16816456 C - PLEKHA7 Splice_Site p.X840_splice 0.09 TCGA-EW-A2FV-01 11 18101900 18101900 A - SAAL1 3'UTR 0.16 TCGA-EW-A2FV-01 11 18159181 18159181 C - MRGPRX3 Frame_Shift_Del p.L145Cfs*67 0.11 TCGA-EW-A2FV-01 11 18288498 18288498 T - SAA1 Frame_Shift_Del p.S23Rfs*20 0.08 TCGA-EW-A2FV-01 11 18610182 18610182 C - UEVLD Frame_Shift_Del p.G7Afs*2 0.11 TCGA-EW-A2FV-01 11 18751293 18751293 C - PTPN5 Frame_Shift_Del p.A468Pfs*58 0.09 TCGA-EW-A2FV-01 11 18764900 18764900 A - PTPN5 Frame_Shift_Del p.L123Cfs*2 0.11 TCGA-EW-A2FV-01 11 20136312 20136312 C - NAV2 Frame_Shift_Del p.S2440Vfs*8 0.14 TCGA-EW-A2FV-01 11 20483596 20483596 T - PRMT3 Frame_Shift_Del p.W383Gfs*12 0.10 TCGA-EW-A2FV-01 11 20623118 20623118 G - SLC6A5 Frame_Shift_Del p.G150Afs*3 0.13 TCGA-EW-A2FV-01 11 2170379 2170379 C - INS-IGF2 Frame_Shift_Del p.T129Lfs*5 0.14 TCGA-EW-A2FV-01 11 2441584 2441584 G - TRPM5 Frame_Shift_Del p.L173Sfs*25 0.09 TCGA-EW-A2FV-01 11 27520946 27520946 C - LIN7C Frame_Shift_Del p.G133Afs*14 0.08 TCGA-EW-A2FV-01 11 30033536 30033536 G - KCNA4 Frame_Shift_Del p.I231Sfs*11 0.11 TCGA-EW-A2FV-01 11 30034068 30034068 C A KCNA4 Missense_Mutation p.G53V 0.30 tolerated_low_confidence(0.1) unknown(0) TCGA-EW-A2FV-01 11 3026656 3026656 G - CARS Frame_Shift_Del p.T720Qfs*3 0.08 TCGA-EW-A2FV-01 11 30942409 30942409 A - DCDC1 Frame_Shift_Del p.F1069Lfs*20 0.11 TCGA-EW-A2FV-01 11 31815042 31815042 A - PAX6 Frame_Shift_Del p.Y340Tfs*39 0.10 TCGA-EW-A2FV-01 11 32118748 32118748 A - RCN1 Frame_Shift_Del p.T106Pfs*44 0.11 TCGA-EW-A2FV-01 11 32637620 32637620 T - CCDC73 Frame_Shift_Del p.N414Tfs*13 0.09 TCGA-EW-A2FV-01 11 33090386 33090386 C - TCP11L1 Frame_Shift_Del p.I438Ffs*10 0.12 TCGA-EW-A2FV-01 11 3681340 3681340 G - ART1 Frame_Shift_Del p.G199Afs*7 0.21 TCGA-EW-A2FV-01 11 3687616 3687616 C - CHRNA10 Frame_Shift_Del p.Q359Sfs*41 0.16 TCGA-EW-A2FV-01 11 3741996 3741996 T - NUP98 Frame_Shift_Del p.I736Lfs*29 0.09 TCGA-EW-A2FV-01 11 399111 399111 G - PKP3 Frame_Shift_Del p.K396Nfs*41 0.08 TCGA-EW-A2FV-01 11 43364020 43364020 G - API5 Frame_Shift_Del p.G513Afs*14 0.10 TCGA-EW-A2FV-01 11 43861551 43861551 T - HSD17B12 Frame_Shift_Del p.F208Lfs*2 0.10 TCGA-EW-A2FV-01 11 4409628 4409628 C - TRIM21 Frame_Shift_Del p.E213Rfs*20 0.09 TCGA-EW-A2FV-01 11 4470698 4470698 A - OR52K2 Frame_Shift_Del p.N44Tfs*51 0.10 TCGA-EW-A2FV-01 11 4510576 4510576 C - OR52K1 Frame_Shift_Del p.A149Vfs*7 0.10 TCGA-EW-A2FV-01 11 46001364 46001364 G - PHF21A Frame_Shift_Del p.H103Tfs*14 0.09 TCGA-EW-A2FV-01 11 46388871 46388871 C - DGKZ Frame_Shift_Del p.L254Wfs*54 0.08 TCGA-EW-A2FV-01 11 46455023 46455023 C - AMBRA1 Splice_Site p.X902_splice 0.09 TCGA-EW-A2FV-01 11 4661155 4661155 T - OR51D1 Frame_Shift_Del p.F46Lfs*11 0.10 TCGA-EW-A2FV-01 11 46701216 46701216 G - ARHGAP1 Frame_Shift_Del p.H337Mfs*35 0.13 TCGA-EW-A2FV-01 11 46702074 46702074 A - ARHGAP1 Frame_Shift_Del p.I261Mfs*111 0.12 TCGA-EW-A2FV-01 11 47193049 47193049 T - ARFGAP2 Frame_Shift_Del p.K290Rfs*37 0.09 TCGA-EW-A2FV-01 11 47259398 47259398 A - DDB2 Frame_Shift_Del p.H345Lfs*25 0.08 TCGA-EW-A2FV-01 11 47307120 47307120 G - MADD Frame_Shift_Del p.G845Afs*39 0.09 TCGA-EW-A2FV-01 11 47371620 47371620 G - MYBPC3 Frame_Shift_Del p.D151Mfs*8 0.08 TCGA-EW-A2FV-01 11 47440419 47440419 G - PSMC3 Frame_Shift_Del p.K430Rfs*? 0.10 TCGA-EW-A2FV-01 11 47440746 47440746 G - PSMC3 Frame_Shift_Del p.P377Lfs*3 0.09 TCGA-EW-A2FV-01 11 47470394 47470394 C - RAPSN Frame_Shift_Del p.R42Afs*22 0.11 TCGA-EW-A2FV-01 11 47599139 47599139 A - KBTBD4 Frame_Shift_Del p.L154Wfs*13 0.08 TCGA-EW-A2FV-01 11 47721026 47721026 T - AGBL2 Frame_Shift_Del p.G223Efs*7 0.08 TCGA-EW-A2FV-01 11 47726132 47726132 A - AGBL2 Frame_Shift_Del p.I183Mfs*36 0.08 TCGA-EW-A2FV-01 11 47754166 47754166 T - FNBP4 Frame_Shift_Del p.K581Nfs*9 0.08 TCGA-EW-A2FV-01 11 47837031 47837031 T - NUP160 Frame_Shift_Del p.Y564Tfs*10 0.08 TCGA-EW-A2FV-01 11 49179535 49179535 T - FOLH1 Frame_Shift_Del p.S501Vfs*12 0.12 TCGA-EW-A2FV-01 11 5474769 5474769 C - OR51I2 Frame_Shift_Del p.P18Lfs*16 0.08 TCGA-EW-A2FV-01 11 5475352 5475352 T - OR51I2 Frame_Shift_Del p.F213Lfs*43 0.09 TCGA-EW-A2FV-01 11 5536582 5536582 A - UBQLNL Frame_Shift_Del p.S364Pfs*23 0.12 TCGA-EW-A2FV-01 11 56086426 56086426 T - OR8K3 Frame_Shift_Del p.L216Yfs*8 0.08 TCGA-EW-A2FV-01 11 56257956 56257956 T - OR5M8 Frame_Shift_Del p.E298Kfs*3 0.09 TCGA-EW-A2FV-01 11 563498 563498 C - RASSF7 Intron 0.11 TCGA-EW-A2FV-01 11 5687251 5687251 A - TRIM5 Frame_Shift_Del p.R277Efs*5 0.08 TCGA-EW-A2FV-01 11 57087601 57087601 T - TNKS1BP1 Frame_Shift_Del p.K227Sfs*108 0.10 TCGA-EW-A2FV-01 11 57982600 57982600 G - OR1S1 Frame_Shift_Del p.T130Pfs*14 0.08 TCGA-EW-A2FV-01 11 59210851 59210851 T - OR5A1 Frame_Shift_Del p.F71Sfs*48 0.09 TCGA-EW-A2FV-01 11 59245678 59245678 C - OR4D10 Frame_Shift_Del p.R260Gfs*26 0.09 TCGA-EW-A2FV-01 11 59271498 59271498 G - OR4D11 Frame_Shift_Del p.G152Afs*47 0.10 TCGA-EW-A2FV-01 11 59369142 59369142 T - OSBP Frame_Shift_Del p.N331Tfs*20 0.13 TCGA-EW-A2FV-01 11 59573881 59573881 G - MRPL16 Frame_Shift_Del p.P232Hfs*4 0.08 TCGA-EW-A2FV-01 11 59612915 59612915 A - GIF Frame_Shift_Del p.F4Lfs*6 0.09 TCGA-EW-A2FV-01 11 5968647 5968647 C - OR56A3 Frame_Shift_Del p.S26Afs*18 0.11 TCGA-EW-A2FV-01 11 60233580 60233580 A - MS4A1 Frame_Shift_Del p.N176Tfs*21 0.09 TCGA-EW-A2FV-01 11 60234436 60234436 T - MS4A1 Frame_Shift_Del p.L194Cfs*3 0.08 TCGA-EW-A2FV-01 11 60268539 60268539 T - MS4A12 Frame_Shift_Del p.L100* 0.09 TCGA-EW-A2FV-01 11 60703965 60703965 C - TMEM132A Frame_Shift_Del p.T889Pfs*18 0.14 TCGA-EW-A2FV-01 11 60708619 60708619 A - SLC15A3 Frame_Shift_Del p.F417Lfs*97 0.11 TCGA-EW-A2FV-01 11 60971006 60989842 11:60971006-60989842 - PGA3 large deletion 0.09 TCGA-EW-A2FV-01 11 61070534 61070534 C - DDB1 Frame_Shift_Del p.V976Cfs*38 0.09 TCGA-EW-A2FV-01 11 61121296 61121296 C - CYB561A3 Frame_Shift_Del p.S135Tfs*35 0.09 TCGA-EW-A2FV-01 11 61131805 61131805 A - TMEM138 5'UTR 0.11 TCGA-EW-A2FV-01 11 61188927 61188927 T - CPSF7 Frame_Shift_Del p.I113Ffs*29 0.11 TCGA-EW-A2FV-01 11 61547396 61547396 C - MYRF Frame_Shift_Del p.F778Sfs*12 0.08 TCGA-EW-A2FV-01 11 61912732 61912732 T - INCENP Frame_Shift_Del p.F603Lfs*188 0.09 TCGA-EW-A2FV-01 11 62284763 62284763 T - AHNAK Frame_Shift_Del p.K5709Sfs*35 0.08 TCGA-EW-A2FV-01 11 62298214 62298214 T - AHNAK Frame_Shift_Del p.V1226Cfs*27 0.08 TCGA-EW-A2FV-01 11 62344171 62344171 C - TUT1 Frame_Shift_Del p.D516Mfs*9 0.08 TCGA-EW-A2FV-01 11 62358978 62358978 A - TUT1 Frame_Shift_Del p.C32Vfs*51 0.09 TCGA-EW-A2FV-01 11 62361335 62361335 C - MTA2 3'UTR 0.15 TCGA-EW-A2FV-01 11 62362070 62362070 C - MTA2 Frame_Shift_Del p.G537Vfs*22 0.12 TCGA-EW-A2FV-01 11 62363521 62363521 C - MTA2 Frame_Shift_Del p.A359Lfs*7 0.09 TCGA-EW-A2FV-01 11 62363537 62363537 T - MTA2 Frame_Shift_Del p.K353Nfs*4 0.14 TCGA-EW-A2FV-01 11 62379045 62379045 G - EML3 Frame_Shift_Del p.L16Sfs*4 0.12 TCGA-EW-A2FV-01 11 62445528 62445528 A - UBXN1 Frame_Shift_Del p.L118Wfs*41 0.09 TCGA-EW-A2FV-01 11 62559300 62559300 C - TMEM223 Frame_Shift_Del p.G56Afs*78 0.15 TCGA-EW-A2FV-01 11 63277294 63277294 C - LGALS12 Frame_Shift_Del p.P163Hfs*16 0.08 TCGA-EW-A2FV-01 11 63283769 63283769 G - LGALS12 Frame_Shift_Del p.L308Wfs*6 0.12 TCGA-EW-A2FV-01 11 63307049 63307049 G - RARRES3 Frame_Shift_Del p.A25Pfs*4 0.10 TCGA-EW-A2FV-01 11 63325948 63325948 C - HRASLS2 Frame_Shift_Del p.Q102Rfs*7 0.09 TCGA-EW-A2FV-01 11 63396800 63396800 T - ATL3 Frame_Shift_Del p.A540Lfs*7 0.12 TCGA-EW-A2FV-01 11 63398702 63398702 C - ATL3 Frame_Shift_Del p.G450Afs*3 0.10 TCGA-EW-A2FV-01 11 63720003 63720003 T - NAA40 Frame_Shift_Del p.F126Lfs*43 0.11 TCGA-EW-A2FV-01 11 63970927 63970927 G - STIP1 Frame_Shift_Del p.A465Qfs*8 0.09 TCGA-EW-A2FV-01 11 63990536 63990536 A - FERMT3 Frame_Shift_Del p.D568Tfs*11 0.09 TCGA-EW-A2FV-01 11 64031167 64031167 C - PLCB3 Frame_Shift_Del p.H821Tfs*39 0.14 TCGA-EW-A2FV-01 11 64074726 64074726 T - ESRRA Frame_Shift_Del p.S26Pfs*169 0.09 TCGA-EW-A2FV-01 11 64361212 64361212 G - SLC22A12 Frame_Shift_Del p.D257Tfs*59 0.12 TCGA-EW-A2FV-01 11 64496408 64496408 G - RASGRP2 Frame_Shift_Del p.M567Cfs*87 0.09 TCGA-EW-A2FV-01 11 64526108 64526108 G - PYGM Frame_Shift_Del p.L105* 0.08 TCGA-EW-A2FV-01 11 64572622 64572622 G - MEN1 Frame_Shift_Del p.H417Tfs*33 0.09 TCGA-EW-A2FV-01 11 64591890 64591890 T - CDC42BPG 3'UTR 0.11 TCGA-EW-A2FV-01 11 64599118 64599118 C - CDC42BPG Frame_Shift_Del p.E1055Nfs*82 0.11 TCGA-EW-A2FV-01 11 64607710 64607710 C - CDC42BPG Frame_Shift_Del p.D155Tfs*3 0.17 TCGA-EW-A2FV-01 11 64664958 64664958 A - ATG2A Frame_Shift_Del p.F1692Lfs*16 0.09 TCGA-EW-A2FV-01 11 64824862 64824862 C - NAALADL1 Frame_Shift_Del p.G195Vfs*2 0.09 TCGA-EW-A2FV-01 11 64892073 64892073 C - MRPL49 Frame_Shift_Del p.P61Qfs*47 0.11 TCGA-EW-A2FV-01 11 65113742 65113742 C - DPF2 Frame_Shift_Del p.V312* 0.09 TCGA-EW-A2FV-01 11 65305325 65305325 G - SCYL1 Frame_Shift_Del p.G670Afs*3 0.10 TCGA-EW-A2FV-01 11 65391759 65391759 C - PCNXL3 Frame_Shift_Del p.F881Sfs*54 0.09 TCGA-EW-A2FV-01 11 65395004 65395004 C - PCNXL3 Frame_Shift_Del p.Q1219Rfs*28 0.09 TCGA-EW-A2FV-01 11 65417643 65417643 A - SIPA1 Frame_Shift_Del p.T962Lfs*48 0.12 TCGA-EW-A2FV-01 11 65562806 65562806 C - OVOL1 Frame_Shift_Del p.L267Cfs*38 0.13 TCGA-EW-A2FV-01 11 65633311 65633311 C - MUS81 Frame_Shift_Del p.K514Rfs*7 0.11 TCGA-EW-A2FV-01 11 65651091 65651091 C - CTSW 3'UTR 0.10 TCGA-EW-A2FV-01 11 6569228 6569228 T - DNHD1 Frame_Shift_Del p.F2289Lfs*3 0.08 TCGA-EW-A2FV-01 11 6569547 6569547 A - DNHD1 Frame_Shift_Del p.D2339Mfs*12 0.09 TCGA-EW-A2FV-01 11 65770811 65770811 G - BANF1 Frame_Shift_Del p.G31Afs*22 0.08 TCGA-EW-A2FV-01 11 65792998 65792998 G - CATSPER1 Frame_Shift_Del p.H285Tfs*50 0.09 TCGA-EW-A2FV-01 11 65819975 65819975 A - SF3B2 Frame_Shift_Del p.A41Lfs*25 0.09 TCGA-EW-A2FV-01 11 66193447 66193447 A - NPAS4 Frame_Shift_Del p.E799Dfs*6 0.10 TCGA-EW-A2FV-01 11 66254035 66254035 G - DPP3 Frame_Shift_Del p.S130Vfs*101 0.12 TCGA-EW-A2FV-01 11 66360057 66360057 C - CCDC87 Frame_Shift_Del p.V144Sfs*40 0.09 TCGA-EW-A2FV-01 11 66368002 66368002 C - CCS Frame_Shift_Del p.Q159Rfs*30 0.11 TCGA-EW-A2FV-01 11 66488591 66488591 G - SPTBN2 Frame_Shift_Del p.R41Afs*27 0.12 TCGA-EW-A2FV-01 11 67048606 67048606 G - ADRBK1 Frame_Shift_Del p.G201Afs*19 0.13 TCGA-EW-A2FV-01 11 67067565 67067565 C - ANKRD13D Frame_Shift_Del p.I350Sfs*16 0.10 TCGA-EW-A2FV-01 11 67185987 67185987 C - CARNS1 Frame_Shift_Del p.P121Rfs*13 0.11 TCGA-EW-A2FV-01 11 67191398 67191398 T - CARNS1 Frame_Shift_Del p.F727Lfs*77 0.10 TCGA-EW-A2FV-01 11 67191819 67191819 C - CARNS1 Frame_Shift_Del p.Q868Sfs*6 0.18 TCGA-EW-A2FV-01 11 67191870 67191870 C - CARNS1 Frame_Shift_Del p.L885Cfs*110 0.09 TCGA-EW-A2FV-01 11 67219281 67219281 C - GPR152 Frame_Shift_Del p.L306Cfs*29 0.11 TCGA-EW-A2FV-01 11 67254601 67254601 C - AIP Frame_Shift_Del p.I76Sfs*80 0.10 TCGA-EW-A2FV-01 11 67770553 67770553 T - UNC93B1 Frame_Shift_Del p.M111Cfs*2 0.12 TCGA-EW-A2FV-01 11 67829443 67829443 A - CHKA Frame_Shift_Del p.S431Hfs*93 0.11 TCGA-EW-A2FV-01 11 6789359 6789359 A - OR2AG2 Frame_Shift_Del p.F277Sfs*9 0.08 TCGA-EW-A2FV-01 11 67957451 67957451 T - SUV420H1 Frame_Shift_Del p.K31Nfs*10 0.12 TCGA-EW-A2FV-01 11 68193576 68193576 C - LRP5 Frame_Shift_Del p.D1186Efs*66 0.08 TCGA-EW-A2FV-01 11 68315547 68315547 T - PPP6R3 Frame_Shift_Del p.L143* 0.08 TCGA-EW-A2FV-01 11 68571540 68571540 T - CPT1A Frame_Shift_Del p.K161Nfs*23 0.08 TCGA-EW-A2FV-01 11 6867543 6867543 C - OR10A5 Frame_Shift_Del p.C212Afs*3 0.09 TCGA-EW-A2FV-01 11 688413 688413 T - DEAF1 Frame_Shift_Del p.A146Rfs*3 0.12 TCGA-EW-A2FV-01 11 6964824 6964824 A - ZNF215 Frame_Shift_Del p.R224Dfs*3 0.09 TCGA-EW-A2FV-01 11 70028677 70028677 G - ANO1 Frame_Shift_Del p.T826Pfs*79 0.11 TCGA-EW-A2FV-01 11 70028747 70028747 C - ANO1 Frame_Shift_Del p.N850Mfs*55 0.14 TCGA-EW-A2FV-01 11 70224174 70224174 A - PPFIA1 Frame_Shift_Del p.K1143Sfs*10 0.09 TCGA-EW-A2FV-01 11 70332061 70332061 G - SHANK2 Frame_Shift_Del p.P1447Lfs*6 0.09 TCGA-EW-A2FV-01 11 71640042 71640042 G - RNF121 5'UTR 0.17 TCGA-EW-A2FV-01 11 71715365 71715365 A - NUMA1 Frame_Shift_Del p.F2010Sfs*5 0.08 TCGA-EW-A2FV-01 11 71820860 71820860 G - ANAPC15 3'UTR 0.13 TCGA-EW-A2FV-01 11 71850683 71850683 C - FOLR3 Frame_Shift_Del p.T226Lfs*50 0.12 TCGA-EW-A2FV-01 11 72409107 72409107 A - ARAP1 Frame_Shift_Del p.F862Lfs*13 0.18 TCGA-EW-A2FV-01 11 72410067 72410067 C - ARAP1 Frame_Shift_Del p.V842Sfs*12 0.08 TCGA-EW-A2FV-01 11 72527864 72527864 G - ATG16L2 Frame_Shift_Del p.G71Afs*19 0.10 TCGA-EW-A2FV-01 11 73074453 73074453 C - ARHGEF17 Frame_Shift_Del p.P1734Lfs*33 0.11 TCGA-EW-A2FV-01 11 73676010 73676010 A - DNAJB13 Frame_Shift_Del p.E141Dfs*26 0.11 TCGA-EW-A2FV-01 11 73753203 73753203 C - C2CD3 Frame_Shift_Del p.H1854Mfs*18 0.10 TCGA-EW-A2FV-01 11 74617301 74617301 T - XRRA1 Frame_Shift_Del p.K321Rfs*36 0.08 TCGA-EW-A2FV-01 11 74977214 74977214 T - ARRB1 Frame_Shift_Del p.N417Tfs*120 0.09 TCGA-EW-A2FV-01 11 75298714 75298714 G - MAP6 Frame_Shift_Del p.P611Qfs*10 0.08 TCGA-EW-A2FV-01 11 76858930 76858930 G - MYO7A Frame_Shift_Del p.D75Tfs*31 0.12 TCGA-EW-A2FV-01 11 76891444 76891444 A - MYO7A Frame_Shift_Del p.M872Cfs*13 0.09 TCGA-EW-A2FV-01 11 76892570 76892570 T - MYO7A Frame_Shift_Del p.F947Lfs*115 0.13 TCGA-EW-A2FV-01 11 76990399 76990399 A - GDPD4 Frame_Shift_Del p.F33Lfs*3 0.09 TCGA-EW-A2FV-01 11 77330654 77330654 A - CLNS1A 3'UTR 0.10 TCGA-EW-A2FV-01 11 78380430 78380430 G - TENM4 Frame_Shift_Del p.T2321Pfs*30 0.09 TCGA-EW-A2FV-01 11 802787 802787 C - PIDD Frame_Shift_Del p.D272Tfs*12 0.13 TCGA-EW-A2FV-01 11 803583 803583 C - PIDD Frame_Shift_Del p.Q101Nfs*14 0.12 TCGA-EW-A2FV-01 11 82644989 82644989 A - C11orf82 Frame_Shift_Del p.I872Yfs*12 0.09 TCGA-EW-A2FV-01 11 82997039 82997039 G - CCDC90B 5'UTR 0.09 TCGA-EW-A2FV-01 11 83676453 83676453 T - DLG2 Frame_Shift_Del p.N372Tfs*5 0.08 TCGA-EW-A2FV-01 11 8435115 8435115 T - STK33 Frame_Shift_Del p.K424Sfs*2 0.08 TCGA-EW-A2FV-01 11 8486257 8486257 T - STK33 Frame_Shift_Del p.K151Rfs*7 0.09 TCGA-EW-A2FV-01 11 84865637 84865637 T - DLG2 Frame_Shift_Del p.N82Ifs*56 0.08 TCGA-EW-A2FV-01 11 85345269 85345269 T - TMEM126B Frame_Shift_Del p.L116Cfs*11 0.12 TCGA-EW-A2FV-01 11 86103679 86103679 T - CCDC81 Frame_Shift_Del p.L134Yfs*7 0.08 TCGA-EW-A2FV-01 11 8704298 8704298 C - RPL27A 5'UTR 0.12 TCGA-EW-A2FV-01 11 8717023 8717023 A - ST5 Frame_Shift_Del p.L1123Sfs*8 0.08 TCGA-EW-A2FV-01 11 89177357 89177357 T - NOX4 Frame_Shift_Del p.V132* 0.11 TCGA-EW-A2FV-01 11 8940946 8940946 G - AKIP1 Frame_Shift_Del p.G185Afs*5 0.09 TCGA-EW-A2FV-01 11 89443529 89443529 T - TRIM77 Frame_Shift_Del p.L22* 0.14 TCGA-EW-A2FV-01 11 9072194 9072194 T - SCUBE2 Frame_Shift_Del p.N533Mfs*20 0.12 TCGA-EW-A2FV-01 11 9087459 9087459 C - SCUBE2 Frame_Shift_Del p.V277* 0.11 TCGA-EW-A2FV-01 11 9111312 9111312 G - SCUBE2 Frame_Shift_Del p.T67Pfs*37 0.09 TCGA-EW-A2FV-01 11 9171679 9171679 T - DENND5A Frame_Shift_Del p.K895Sfs*7 0.08 TCGA-EW-A2FV-01 11 93527174 93527174 A - MED17 Frame_Shift_Del p.K278Nfs*18 0.09 TCGA-EW-A2FV-01 11 93808524 93808524 G - HEPHL1 Frame_Shift_Del p.G564Afs*12 0.08 TCGA-EW-A2FV-01 11 9435874 9435874 T - IPO7 Frame_Shift_Del p.F185Lfs*35 0.08 TCGA-EW-A2FV-01 11 95509133 95509133 T - FAM76B Frame_Shift_Del p.M295* 0.10 TCGA-EW-A2FV-01 12 100599500 100599500 T - ACTR6 Frame_Shift_Del p.F79Lfs*11 0.09 TCGA-EW-A2FV-01 12 101789366 101789366 A - ARL1 3'UTR 0.08 TCGA-EW-A2FV-01 12 10206933 10206933 T - CLEC9A Frame_Shift_Del p.F53Sfs*28 0.11 TCGA-EW-A2FV-01 12 102811605 102811605 T - IGF1 Frame_Shift_Del p.G194Efs*8 0.08 TCGA-EW-A2FV-01 12 10312528 10312528 A - OLR1 Frame_Shift_Del p.L258* 0.09 TCGA-EW-A2FV-01 12 104031813 104031813 A - STAB2 Frame_Shift_Del p.I245Sfs*78 0.10 TCGA-EW-A2FV-01 12 105445924 105445924 A - ALDH1L2 Frame_Shift_Del p.F493Lfs*9 0.08 TCGA-EW-A2FV-01 12 105509489 105509489 T - KIAA1033 Frame_Shift_Del p.F140Lfs*19 0.09 TCGA-EW-A2FV-01 12 10599255 10599255 T - KLRC1 Frame_Shift_Del p.D200Tfs*14 0.09 TCGA-EW-A2FV-01 12 106897922 106897922 T - POLR3B Frame_Shift_Del p.L1055* 0.09 TCGA-EW-A2FV-01 12 107078672 107078672 A - RFX4 Intron 0.13 TCGA-EW-A2FV-01 12 107268328 107268328 A - RIC8B Intron 0.11 TCGA-EW-A2FV-01 12 107371422 107371422 T - MTERFD3 Frame_Shift_Del p.E358Sfs*14 0.10 TCGA-EW-A2FV-01 12 108136028 108136028 A - PRDM4 Frame_Shift_Del p.Y527Ifs*37 0.09 TCGA-EW-A2FV-01 12 109194657 109194657 A - SSH1 Frame_Shift_Del p.P350Lfs*30 0.08 TCGA-EW-A2FV-01 12 109331092 109331092 C - SVOP Frame_Shift_Del p.D242Tfs*28 0.08 TCGA-EW-A2FV-01 12 109530461 109530461 T - ALKBH2 Frame_Shift_Del p.E44Gfs*46 0.08 TCGA-EW-A2FV-01 12 109540686 109540686 T - UNG Frame_Shift_Del p.F193Lfs*50 0.10 TCGA-EW-A2FV-01 12 109924319 109924319 T - UBE3B Frame_Shift_Del p.W130Gfs*60 0.12 TCGA-EW-A2FV-01 12 109945381 109945381 T - UBE3B Frame_Shift_Del p.D489Mfs*20 0.09 TCGA-EW-A2FV-01 12 109954617 109954617 G - UBE3B Frame_Shift_Del p.L670Wfs*37 0.08 TCGA-EW-A2FV-01 12 109972425 109972425 C - UBE3B Frame_Shift_Del p.R1016Gfs*46 0.13 TCGA-EW-A2FV-01 12 110783915 110783915 C - ATP2A2 Frame_Shift_Del p.L952Cfs*10 0.10 TCGA-EW-A2FV-01 12 110811944 110811944 C - ANAPC7 3'UTR 0.10 TCGA-EW-A2FV-01 12 110834116 110834116 T - ANAPC7 Frame_Shift_Del p.V116* 0.08 TCGA-EW-A2FV-01 12 110927860 110927860 A - FAM216A Frame_Shift_Del p.K249Rfs*6 0.14 TCGA-EW-A2FV-01 12 111893986 111893986 C - ATXN2 Frame_Shift_Del p.A1199Rfs*7 0.09 TCGA-EW-A2FV-01 12 112605252 112605252 C - HECTD4 Frame_Shift_Del p.A3989Qfs*81 0.08 TCGA-EW-A2FV-01 12 112685891 112685891 A - HECTD4 Frame_Shift_Del p.Y1264Mfs*10 0.09 TCGA-EW-A2FV-01 12 112685919 112685919 C - HECTD4 Frame_Shift_Del p.K1255Nfs*19 0.08 TCGA-EW-A2FV-01 12 113557236 113557236 G - RASAL1 Frame_Shift_Del p.R148Efs*105 0.11 TCGA-EW-A2FV-01 12 113617770 113617770 C - DDX54 Frame_Shift_Del p.Y116Tfs*14 0.09 TCGA-EW-A2FV-01 12 113645307 113645307 T - IQCD Frame_Shift_Del p.N222Tfs*16 0.09 TCGA-EW-A2FV-01 12 113730817 113730817 G - TPCN1 Frame_Shift_Del p.A805Pfs*36 0.09 TCGA-EW-A2FV-01 12 115117717 115117717 C - TBX3 Splice_Site p.X239_splice 0.11 TCGA-EW-A2FV-01 12 117387469 117387469 T - FBXW8 Frame_Shift_Del p.L213Cfs*20 0.10 TCGA-EW-A2FV-01 12 117476926 117476926 G - TESC 3'UTR 0.10 TCGA-EW-A2FV-01 12 117680489 117680489 T - NOS1 Frame_Shift_Del p.K1029Sfs*55 0.08 TCGA-EW-A2FV-01 12 117904980 117904980 G - KSR2 3'UTR 0.10 TCGA-EW-A2FV-01 12 117914268 117914268 C - KSR2 Splice_Site p.X861_splice 0.08 TCGA-EW-A2FV-01 12 117923429 117923429 T - KSR2 Frame_Shift_Del p.T763Pfs*9 0.08 TCGA-EW-A2FV-01 12 118405932 118405932 G - KSR2 Frame_Shift_Del p.K44Nfs*21 0.09 TCGA-EW-A2FV-01 12 118818009 118818009 A - SUDS3 Frame_Shift_Del p.E63Kfs*4 0.10 TCGA-EW-A2FV-01 12 119568601 119568601 C - SRRM4 Frame_Shift_Del p.L246Sfs*12 0.10 TCGA-EW-A2FV-01 12 119866545 119866545 A - CCDC60 Frame_Shift_Del p.K51Rfs*9 0.09 TCGA-EW-A2FV-01 12 120106033 120106033 C - PRKAB1 5'UTR 0.13 TCGA-EW-A2FV-01 12 120661597 120661597 T - PXN Frame_Shift_Del p.T94Lfs*40 0.10 TCGA-EW-A2FV-01 12 121000792 121000792 G - RNF10 Frame_Shift_Del p.V392Sfs*13 0.08 TCGA-EW-A2FV-01 12 121442161 121442161 T - C12orf43 Frame_Shift_Del p.K195Rfs*116 0.08 TCGA-EW-A2FV-01 12 121880528 121880528 C - KDM2B Frame_Shift_Del p.E906Rfs*28 0.10 TCGA-EW-A2FV-01 12 122670833 122670833 C - LRRC43 Frame_Shift_Del p.T172Hfs*31 0.08 TCGA-EW-A2FV-01 12 122757501 122757501 C - CLIP1 Frame_Shift_Del p.G1413Vfs*? 0.12 TCGA-EW-A2FV-01 12 122801371 122801371 T - CLIP1 Frame_Shift_Del p.N1133Mfs*5 0.08 TCGA-EW-A2FV-01 12 124798881 124798881 C - FAM101A Frame_Shift_Del p.L74Wfs*118 0.12 TCGA-EW-A2FV-01 12 124911239 124911239 G - NCOR2 Frame_Shift_Del p.M420* 0.09 TCGA-EW-A2FV-01 12 125299562 125299562 C - SCARB1 Frame_Shift_Del p.G128Afs*19 0.08 TCGA-EW-A2FV-01 12 125299615 125299615 G - SCARB1 Frame_Shift_Del p.V111Cfs*36 0.10 TCGA-EW-A2FV-01 12 125438664 125438664 A - DHX37 Frame_Shift_Del p.L850* 0.08 TCGA-EW-A2FV-01 12 12630126 12630126 G - DUSP16 Frame_Shift_Del p.Q547Rfs*7 0.08 TCGA-EW-A2FV-01 12 12977597 12977597 C - DDX47 Frame_Shift_Del p.P341Lfs*11 0.08 TCGA-EW-A2FV-01 12 133148026 133148026 G - FBRSL1 Frame_Shift_Del p.H450Tfs*46 0.11 TCGA-EW-A2FV-01 12 133210921 133210921 T - POLE Frame_Shift_Del p.N1952Mfs*47 0.09 TCGA-EW-A2FV-01 12 133210942 133210942 C - POLE Frame_Shift_Del p.G1945Efs*54 0.10 TCGA-EW-A2FV-01 12 133294068 133294068 G - PGAM5 Frame_Shift_Del p.L140* 0.13 TCGA-EW-A2FV-01 12 133318024 133318024 C - ANKLE2 Frame_Shift_Del p.I468Sfs*5 0.09 TCGA-EW-A2FV-01 12 14781608 14781608 T - GUCY2C Frame_Shift_Del p.I741Lfs*24 0.10 TCGA-EW-A2FV-01 12 15262329 15262329 G T RERG Silent p.I105I 0.33 TCGA-EW-A2FV-01 12 15774310 15774310 T - EPS8 Frame_Shift_Del p.I804Sfs*26 0.09 TCGA-EW-A2FV-01 12 15818764 15818764 G - EPS8 Frame_Shift_Del p.P221Lfs*41 0.11 TCGA-EW-A2FV-01 12 18576911 18576911 T - PIK3C2G Frame_Shift_Del p.L774* 0.11 TCGA-EW-A2FV-01 12 21176156 21176156 T - SLCO1B7 Frame_Shift_Del p.F175Lfs*21 0.10 TCGA-EW-A2FV-01 12 2162719 2162719 T - CACNA1C 5'Flank 0.14 TCGA-EW-A2FV-01 12 21757485 21757485 C - GYS2 Frame_Shift_Del p.L15Ffs*23 0.09 TCGA-EW-A2FV-01 12 22078967 22078967 A - ABCC9 Frame_Shift_Del p.F105Lfs*5 0.09 TCGA-EW-A2FV-01 12 25699352 25699352 T - IFLTD1 Frame_Shift_Del p.K149Nfs*5 0.09 TCGA-EW-A2FV-01 12 2595327 2595327 C - CACNA1C Frame_Shift_Del p.L273Cfs*32 0.09 TCGA-EW-A2FV-01 12 2613668 2613668 T - CACNA1C Intron 0.11 TCGA-EW-A2FV-01 12 266765 266765 C - IQSEC3 Frame_Shift_Del p.F784Sfs*21 0.08 TCGA-EW-A2FV-01 12 2711032 2711032 G - CACNA1C Frame_Shift_Del p.A977Lfs*38 0.09 TCGA-EW-A2FV-01 12 2714935 2714935 G - CACNA1C Frame_Shift_Del p.V1068Sfs*58 0.08 TCGA-EW-A2FV-01 12 28116392 28116392 T - PTHLH Frame_Shift_Del p.K138Rfs*11 0.08 TCGA-EW-A2FV-01 12 29469798 29469798 A - FAR2 Frame_Shift_Del p.I329Sfs*49 0.10 TCGA-EW-A2FV-01 12 30824014 30824014 A - IPO8 Frame_Shift_Del p.L309* 0.08 TCGA-EW-A2FV-01 12 31250845 31250845 T - DDX11 Frame_Shift_Del p.L598Cfs*3 0.08 TCGA-EW-A2FV-01 12 32895544 32895544 T - DNM1L Frame_Shift_Del p.L674Wfs*5 0.09 TCGA-EW-A2FV-01 12 33031172 33031172 A - PKP2 Frame_Shift_Del p.F214Lfs*49 0.10 TCGA-EW-A2FV-01 12 3387657 3387657 C - TSPAN9 Frame_Shift_Del p.S47Afs*14 0.09 TCGA-EW-A2FV-01 12 369120 369120 C - SLC6A13 Frame_Shift_Del p.H34Tfs*19 0.08 TCGA-EW-A2FV-01 12 39698705 39698705 C - KIF21A Frame_Shift_Del p.G1493Afs*17 0.11 TCGA-EW-A2FV-01 12 39745682 39745682 A - KIF21A Frame_Shift_Del p.S524Lfs*15 0.08 TCGA-EW-A2FV-01 12 39745735 39745735 T - KIF21A Frame_Shift_Del p.N506Tfs*2 0.09 TCGA-EW-A2FV-01 12 42853854 42853854 A - PRICKLE1 Frame_Shift_Del p.L752Wfs*95 0.11 TCGA-EW-A2FV-01 12 43896066 43896066 T - ADAMTS20 Frame_Shift_Del p.K252Nfs*33 0.09 TCGA-EW-A2FV-01 12 44124401 44124401 A - PUS7L Frame_Shift_Del p.F628Lfs*6 0.09 TCGA-EW-A2FV-01 12 45796956 45796956 T - ANO6 Frame_Shift_Del p.F593Lfs*6 0.09 TCGA-EW-A2FV-01 12 46240688 46240688 G - ARID2 Frame_Shift_Del p.E517Kfs*2 0.11 TCGA-EW-A2FV-01 12 46328288 46328288 C - SCAF11 Frame_Shift_Del p.R155Kfs*16 0.10 TCGA-EW-A2FV-01 12 48174257 48174257 G - SLC48A1 3'UTR 0.08 TCGA-EW-A2FV-01 12 48359636 48359636 C - TMEM106C Frame_Shift_Del p.L90Cfs*32 0.09 TCGA-EW-A2FV-01 12 48741834 48741834 C - ZNF641 Frame_Shift_Del p.E28Nfs*3 0.08 TCGA-EW-A2FV-01 12 49169818 49169818 T - ADCY6 Frame_Shift_Del p.L580* 0.12 TCGA-EW-A2FV-01 12 49224294 49224294 G - DDX23 Frame_Shift_Del p.I808Sfs*29 0.09 TCGA-EW-A2FV-01 12 493311 493311 G - KDM5A Frame_Shift_Del p.R85Efs*2 0.09 TCGA-EW-A2FV-01 12 49372500 49372500 C - WNT1 Frame_Shift_Del p.A24Qfs*15 0.14 TCGA-EW-A2FV-01 12 49425755 49425755 C - KMT2D Frame_Shift_Del p.E4245Sfs*33 0.13 TCGA-EW-A2FV-01 12 49436571 49436571 G - KMT2D Frame_Shift_Del p.P1912Lfs*3 0.10 TCGA-EW-A2FV-01 12 49438211 49438211 T - KMT2D Frame_Shift_Del p.K1686Nfs*36 0.15 TCGA-EW-A2FV-01 12 49445734 49445734 C - KMT2D Frame_Shift_Del p.E578Sfs*352 0.08 TCGA-EW-A2FV-01 12 49491427 49491427 T - LMBR1L 3'UTR 0.08 TCGA-EW-A2FV-01 12 49666880 49666880 G - TUBA1C Frame_Shift_Del p.W407Cfs*? 0.13 TCGA-EW-A2FV-01 12 49935520 49935520 G - KCNH3 Frame_Shift_Del p.G141Afs*67 0.09 TCGA-EW-A2FV-01 12 49937823 49937823 T - KCNH3 Frame_Shift_Del p.F317Lfs*18 0.08 TCGA-EW-A2FV-01 12 50036329 50036329 C - FMNL3 3'UTR 0.10 TCGA-EW-A2FV-01 12 50059925 50059925 G - FMNL3 Frame_Shift_Del p.S93Vfs*2 0.11 TCGA-EW-A2FV-01 12 50153047 50153047 T - TMBIM6 Frame_Shift_Del p.F245Lfs*26 0.12 TCGA-EW-A2FV-01 12 50344898 50344898 G - AQP2 Frame_Shift_Del p.A97Lfs*35 0.10 TCGA-EW-A2FV-01 12 50479956 50479956 T - SMARCD1 Frame_Shift_Del p.L64Cfs*6 0.08 TCGA-EW-A2FV-01 12 50615953 50615953 T - LIMA1 Frame_Shift_Del p.M161Wfs*5 0.08 TCGA-EW-A2FV-01 12 51102318 51102318 T - DIP2B Frame_Shift_Del p.F875Sfs*4 0.09 TCGA-EW-A2FV-01 12 52283216 52283216 G - ANKRD33 Frame_Shift_Del p.D197Tfs*8 0.09 TCGA-EW-A2FV-01 12 52451297 52451297 C - NR4A1 Frame_Shift_Del p.V523Sfs*26 0.09 TCGA-EW-A2FV-01 12 52652032 52652032 G - KRT121P RNA 0.10 TCGA-EW-A2FV-01 12 52756727 52756727 C - KRT85 Frame_Shift_Del p.E330Rfs*13 0.08 TCGA-EW-A2FV-01 12 52760848 52760848 G - KRT85 Frame_Shift_Del p.N115Tfs*5 0.10 TCGA-EW-A2FV-01 12 52822471 52822471 T - KRT75 Frame_Shift_Del p.K364Nfs*7 0.08 TCGA-EW-A2FV-01 12 52865907 52865907 C - KRT6C Frame_Shift_Del p.G233Afs*7 0.10 TCGA-EW-A2FV-01 12 52882249 52882249 C - KRT6A Frame_Shift_Del p.L430Wfs*16 0.11 TCGA-EW-A2FV-01 12 52882278 52882278 G - KRT6A Frame_Shift_Del p.L420Sfs*26 0.09 TCGA-EW-A2FV-01 12 52913733 52913733 C - KRT5 Frame_Shift_Del p.L117Sfs*34 0.09 TCGA-EW-A2FV-01 12 52960820 52960820 C - KRT74 Frame_Shift_Del p.G508Efs*53 0.08 TCGA-EW-A2FV-01 12 52981544 52981544 C - KRT72 Frame_Shift_Del p.G394Afs*21 0.09 TCGA-EW-A2FV-01 12 53184013 53184013 C - KRT3 Frame_Shift_Del p.G567Efs*140 0.09 TCGA-EW-A2FV-01 12 53428469 53428469 G - EIF4B Frame_Shift_Del p.T429Pfs*18 0.11 TCGA-EW-A2FV-01 12 53467115 53467115 G - SPRYD3 Frame_Shift_Del p.Y216* 0.27 TCGA-EW-A2FV-01 12 53589449 53589449 G - ITGB7 Frame_Shift_Del p.I345Sfs*15 0.14 TCGA-EW-A2FV-01 12 53607924 53607924 A - RARG Frame_Shift_Del p.F244Lfs*25 0.11 TCGA-EW-A2FV-01 12 53664210 53664210 T - ESPL1 Frame_Shift_Del p.Q399Rfs*19 0.09 TCGA-EW-A2FV-01 12 53911096 53911096 G - ATF7 Frame_Shift_Del p.P426Lfs*2 0.09 TCGA-EW-A2FV-01 12 53926361 53926361 C - ATF7 Frame_Shift_Del p.G236Afs*23 0.09 TCGA-EW-A2FV-01 12 54764418 54764418 C - ZNF385A Frame_Shift_Del p.E308Sfs*6 0.12 TCGA-EW-A2FV-01 12 54778288 54778288 G - ZNF385A Frame_Shift_Del p.P24Hfs*113 0.10 TCGA-EW-A2FV-01 12 54795413 54795413 G - ITGA5 Frame_Shift_Del p.R783Gfs*12 0.08 TCGA-EW-A2FV-01 12 54964098 54964098 T - PDE1B Frame_Shift_Del p.F185Lfs*4 0.08 TCGA-EW-A2FV-01 12 55368313 55368313 C - TESPA1 Frame_Shift_Del p.E12Rfs*18 0.10 TCGA-EW-A2FV-01 12 56109864 56109864 C - BLOC1S1 Frame_Shift_Del p.S11Afs*17 0.09 TCGA-EW-A2FV-01 12 56115647 56115647 C - RDH5 Frame_Shift_Del p.S163Afs*27 0.11 TCGA-EW-A2FV-01 12 56398569 56398569 G - SUOX Frame_Shift_Del p.G467Afs*2 0.09 TCGA-EW-A2FV-01 12 56415244 56415244 T - IKZF4 5'UTR 0.10 TCGA-EW-A2FV-01 12 56514553 56514553 G - ZC3H10 Frame_Shift_Del p.V71* 0.09 TCGA-EW-A2FV-01 12 56522353 56522353 G - ESYT1 Frame_Shift_Del p.G84Afs*39 0.09 TCGA-EW-A2FV-01 12 56531336 56531336 T - ESYT1 Frame_Shift_Del p.F675Sfs*6 0.13 TCGA-EW-A2FV-01 12 56531436 56531436 C - ESYT1 Frame_Shift_Del p.R709Afs*8 0.10 TCGA-EW-A2FV-01 12 56532025 56532025 C - ESYT1 Frame_Shift_Del p.R781Vfs*7 0.12 TCGA-EW-A2FV-01 12 56547822 56547822 C - MYL6B Frame_Shift_Del p.Q42Rfs*17 0.10 TCGA-EW-A2FV-01 12 56558116 56558116 T - SMARCC2 Frame_Shift_Del p.N1180Tfs*103 0.18 TCGA-EW-A2FV-01 12 56661067 56661067 G - COQ10A Intron 0.27 TCGA-EW-A2FV-01 12 56748326 56748326 C - STAT2 Frame_Shift_Del p.E236Rfs*37 0.08 TCGA-EW-A2FV-01 12 56975869 56975869 C - RBMS2 Frame_Shift_Del p.N271Tfs*23 0.08 TCGA-EW-A2FV-01 12 57109689 57109689 G - NACA Frame_Shift_Del p.S723Lfs*109 0.12 TCGA-EW-A2FV-01 12 57109720 57109720 G - NACA Frame_Shift_Del p.P712Lfs*120 0.09 TCGA-EW-A2FV-01 12 57490372 57490372 C - STAT6 Frame_Shift_Del p.A843Pfs*123 0.09 TCGA-EW-A2FV-01 12 57618662 57618662 C - NXPH4 Frame_Shift_Del p.V21Sfs*39 0.11 TCGA-EW-A2FV-01 12 57624647 57624647 C - SHMT2 Frame_Shift_Del p.Q33Rfs*60 0.09 TCGA-EW-A2FV-01 12 57630876 57630876 T - NDUFA4L2 5'UTR 0.10 TCGA-EW-A2FV-01 12 57873154 57873154 C - ARHGAP9 Frame_Shift_Del p.I13Sfs*2 0.14 TCGA-EW-A2FV-01 12 58015048 58015048 G - SLC26A10 Frame_Shift_Del p.M133Cfs*21 0.11 TCGA-EW-A2FV-01 12 58162887 58162887 C - METTL1 Frame_Shift_Del p.K242Rfs*26 0.14 TCGA-EW-A2FV-01 12 58163185 58163185 C - METTL1 Frame_Shift_Del p.L193Wfs*5 0.10 TCGA-EW-A2FV-01 12 58166889 58166889 G - METTL21B Frame_Shift_Del p.I91Sfs*19 0.09 TCGA-EW-A2FV-01 12 59271619 59271619 A - LRIG3 Frame_Shift_Del p.L700Cfs*9 0.11 TCGA-EW-A2FV-01 12 6135132 6135132 T - VWF Frame_Shift_Del p.D1017Tfs*11 0.08 TCGA-EW-A2FV-01 12 64383847 64383847 A - SRGAP1 Frame_Shift_Del p.K142Rfs*13 0.08 TCGA-EW-A2FV-01 12 64813986 64813986 T - XPOT Frame_Shift_Del p.A211Lfs*6 0.08 TCGA-EW-A2FV-01 12 64819664 64819664 T - XPOT Frame_Shift_Del p.S549Lfs*11 0.08 TCGA-EW-A2FV-01 12 65116817 65116817 G - GNS Frame_Shift_Del p.P426Qfs*6 0.10 TCGA-EW-A2FV-01 12 6626079 6626079 C - NCAPD2 Frame_Shift_Del p.R359Efs*41 0.09 TCGA-EW-A2FV-01 12 66345214 66345214 T - HMGA2 Intron 0.09 TCGA-EW-A2FV-01 12 6669676 6669676 A - NOP2 Frame_Shift_Del p.I532Mfs*23 0.08 TCGA-EW-A2FV-01 12 6669883 6669883 G - NOP2 Frame_Shift_Del p.P506Qfs*3 0.11 TCGA-EW-A2FV-01 12 6680117 6680117 G - CHD4 Frame_Shift_Del p.P1880Qfs*4 0.09 TCGA-EW-A2FV-01 12 668478 668478 G - B4GALNT3 Frame_Shift_Del p.F928Sfs*17 0.09 TCGA-EW-A2FV-01 12 6753536 6753536 C - ACRBP Frame_Shift_Del p.T238Lfs*38 0.10 TCGA-EW-A2FV-01 12 67663535 67663535 A - CAND1 Frame_Shift_Del p.M15* 0.13 TCGA-EW-A2FV-01 12 67696283 67696283 T - CAND1 Frame_Shift_Del p.H396Tfs*7 0.08 TCGA-EW-A2FV-01 12 68642606 68642606 A - IL22 Frame_Shift_Del p.F171Lfs*4 0.08 TCGA-EW-A2FV-01 12 69090659 69090659 T - NUP107 Frame_Shift_Del p.F171Lfs*15 0.10 TCGA-EW-A2FV-01 12 69103034 69103034 A - NUP107 Frame_Shift_Del p.T251Qfs*20 0.09 TCGA-EW-A2FV-01 12 69135645 69135645 T - NUP107 Frame_Shift_Del p.C853Vfs*25 0.09 TCGA-EW-A2FV-01 12 69985853 69985853 A - CCT2 Frame_Shift_Del p.I224Lfs*3 0.12 TCGA-EW-A2FV-01 12 70048674 70048674 A - BEST3 3'UTR 0.09 TCGA-EW-A2FV-01 12 70932049 70932049 T - PTPRB Intron 0.10 TCGA-EW-A2FV-01 12 7175822 7175822 A - C1S Frame_Shift_Del p.K420Nfs*19 0.08 TCGA-EW-A2FV-01 12 72056911 72056911 C - ZFC3H1 Frame_Shift_Del p.R161Efs*70 0.13 TCGA-EW-A2FV-01 12 72068061 72068061 T - THAP2 Frame_Shift_Del p.L52Ffs*13 0.11 TCGA-EW-A2FV-01 12 72068154 72068154 T - THAP2 Frame_Shift_Del p.C83Vfs*4 0.09 TCGA-EW-A2FV-01 12 7244984 7244984 T - C1R Intron 0.11 TCGA-EW-A2FV-01 12 7249148 7249148 C - C1RL Frame_Shift_Del p.D435Tfs*26 0.09 TCGA-EW-A2FV-01 12 7310112 7310112 T - CLSTN3 Frame_Shift_Del p.I852Mfs*55 0.08 TCGA-EW-A2FV-01 12 7473385 7473385 A - ACSM4 Frame_Shift_Del p.D331Tfs*14 0.09 TCGA-EW-A2FV-01 12 7479656 7479656 A - ACSM4 Frame_Shift_Del p.K542Nfs*31 0.09 TCGA-EW-A2FV-01 12 75442007 75442007 T - KCNC2 Frame_Shift_Del p.N569Tfs*10 0.08 TCGA-EW-A2FV-01 12 75442036 75442036 G - KCNC2 Frame_Shift_Del p.I560Sfs*19 0.08 TCGA-EW-A2FV-01 12 7548808 7548808 T - CD163L1 Frame_Shift_Del p.I645Ffs*36 0.09 TCGA-EW-A2FV-01 12 75685561 75685561 T - CAPS2 Frame_Shift_Del p.E421Kfs*15 0.08 TCGA-EW-A2FV-01 12 76765257 76765257 A - OSBPL8 Frame_Shift_Del p.F675Lfs*16 0.09 TCGA-EW-A2FV-01 12 77216263 77216263 A - ZDHHC17 Frame_Shift_Del p.G285Dfs*11 0.12 TCGA-EW-A2FV-01 12 7805115 7805115 A - APOBEC1 Frame_Shift_Del p.W121Gfs*19 0.10 TCGA-EW-A2FV-01 12 78516099 78516099 G - NAV3 Frame_Shift_Del p.D1377Tfs*13 0.10 TCGA-EW-A2FV-01 12 8248673 8248673 G - NECAP1 Frame_Shift_Del p.V273Sfs*17 0.08 TCGA-EW-A2FV-01 12 83250860 83250860 G - TMTC2 Frame_Shift_Del p.T54Lfs*3 0.08 TCGA-EW-A2FV-01 12 88376910 88376910 T - C12orf50 Frame_Shift_Del p.T397Hfs*23 0.08 TCGA-EW-A2FV-01 12 88519084 88519084 T - CEP290 Frame_Shift_Del p.E377Kfs*12 0.09 TCGA-EW-A2FV-01 12 91558464 91558464 G - DCN Frame_Shift_Del p.P81Lfs*6 0.10 TCGA-EW-A2FV-01 12 9225293 9225293 C - A2M Frame_Shift_Del p.E1311Nfs*4 0.09 TCGA-EW-A2FV-01 12 9242960 9242960 T - A2M Frame_Shift_Del p.K863Sfs*3 0.08 TCGA-EW-A2FV-01 12 9307299 9307299 G - PZP Frame_Shift_Del p.T1230Pfs*5 0.10 TCGA-EW-A2FV-01 12 93131267 93131267 T - PLEKHG7 5'UTR 0.10 TCGA-EW-A2FV-01 12 95676335 95676335 A - VEZT Frame_Shift_Del p.T416Lfs*8 0.13 TCGA-EW-A2FV-01 12 95905754 95905754 G - METAP2 Frame_Shift_Del p.E351Rfs*34 0.08 TCGA-EW-A2FV-01 12 96288870 96288870 A - CCDC38 Frame_Shift_Del p.L224Cfs*15 0.08 TCGA-EW-A2FV-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.09 TCGA-EW-A2FV-01 12 96396755 96396755 A - LTA4H Frame_Shift_Del p.F567Lfs*33 0.08 TCGA-EW-A2FV-01 13 100154009 100154009 A - TM9SF2 Frame_Shift_Del p.K52Rfs*9 0.25 TCGA-EW-A2FV-01 13 102029364 102029364 C - NALCN Frame_Shift_Del p.G140Afs*9 0.08 TCGA-EW-A2FV-01 13 103504578 103504578 T - BIVM-ERCC5 Frame_Shift_Del p.R495Efs*15 0.09 TCGA-EW-A2FV-01 13 107211932 107211932 T - ARGLU1 Frame_Shift_Del p.R141Gfs*61 0.08 TCGA-EW-A2FV-01 13 109610107 109610107 T - MYO16 Frame_Shift_Del p.L645* 0.09 TCGA-EW-A2FV-01 13 111294835 111294835 G - CARS2 Frame_Shift_Del p.H484Mfs*34 0.12 TCGA-EW-A2FV-01 13 113055467 113055467 T - SPACA7 Frame_Shift_Del p.S146Pfs*65 0.10 TCGA-EW-A2FV-01 13 113181262 113181262 G - TUBGCP3 Frame_Shift_Del p.Q517Rfs*46 0.08 TCGA-EW-A2FV-01 13 113761192 113761192 G - F7 Frame_Shift_Del p.D34Tfs*13 0.10 TCGA-EW-A2FV-01 13 113777187 113777187 C - F10 Frame_Shift_Del p.L7Sfs*42 0.09 TCGA-EW-A2FV-01 13 113826176 113826176 A - PROZ Frame_Shift_Del p.V344Wfs*10 0.10 TCGA-EW-A2FV-01 13 115091309 115091309 T - CHAMP1 Frame_Shift_Del p.F665Lfs*9 0.13 TCGA-EW-A2FV-01 13 20978803 20978803 A - CRYL1 Frame_Shift_Del p.S273Pfs*14 0.09 TCGA-EW-A2FV-01 13 24465535 24465535 C - C1QTNF9B Frame_Shift_Del p.D299Mfs*7 0.13 TCGA-EW-A2FV-01 13 25466806 25466806 T - CENPJ Frame_Shift_Del p.E1064Gfs*26 0.08 TCGA-EW-A2FV-01 13 28011278 28011278 T - MTIF3 Frame_Shift_Del p.N198Mfs*2 0.09 TCGA-EW-A2FV-01 13 28846150 28846150 T - PAN3 Frame_Shift_Del p.L665* 0.08 TCGA-EW-A2FV-01 13 30003028 30003028 A - MTUS2 Intron 0.12 TCGA-EW-A2FV-01 13 30054482 30054482 G - MTUS2 Frame_Shift_Del p.C1138Vfs*19 0.10 TCGA-EW-A2FV-01 13 32747624 32747624 A - FRY Frame_Shift_Del p.K758Nfs*5 0.08 TCGA-EW-A2FV-01 13 33002124 33002124 C - N4BP2L1 Frame_Shift_Del p.T33Hfs*38 0.16 TCGA-EW-A2FV-01 13 33273938 33273938 A - PDS5B Frame_Shift_Del p.I559* 0.11 TCGA-EW-A2FV-01 13 33703517 33703517 G - STARD13 Frame_Shift_Del p.L433Wfs*67 0.11 TCGA-EW-A2FV-01 13 34395280 34395280 T - RFC3 Frame_Shift_Del p.D34Tfs*6 0.08 TCGA-EW-A2FV-01 13 37569668 37569668 T - ALG5 Frame_Shift_Del p.K44Nfs*4 0.09 TCGA-EW-A2FV-01 13 40301663 40301663 T - COG6 Frame_Shift_Del p.L603Ffs*2 0.09 TCGA-EW-A2FV-01 13 44953829 44953829 T - SERP2 Frame_Shift_Del p.F47Lfs*15 0.09 TCGA-EW-A2FV-01 13 45515380 45515380 A - NUFIP1 Frame_Shift_Del p.F483Lfs*22 0.10 TCGA-EW-A2FV-01 13 45914330 45914330 A - TPT1 Intron 0.11 TCGA-EW-A2FV-01 13 46543178 46543178 T - ZC3H13 Frame_Shift_Del p.V1168* 0.09 TCGA-EW-A2FV-01 13 46716469 46716469 T - LCP1 Frame_Shift_Del p.N487Tfs*8 0.08 TCGA-EW-A2FV-01 13 47243232 47243232 A - LRCH1 Frame_Shift_Del p.N174Tfs*11 0.09 TCGA-EW-A2FV-01 13 47345546 47345546 T - ESD 3'UTR 0.09 TCGA-EW-A2FV-01 13 47356867 47356867 A - ESD Frame_Shift_Del p.Y106Mfs*27 0.11 TCGA-EW-A2FV-01 13 47358451 47358451 T - ESD Frame_Shift_Del p.K64Nfs*69 0.08 TCGA-EW-A2FV-01 13 51584247 51584247 C - GUCY1B2 RNA 0.08 TCGA-EW-A2FV-01 13 52728070 52728070 T - NEK3 Frame_Shift_Del p.K90Rfs*14 0.09 TCGA-EW-A2FV-01 13 53313796 53313796 C - LECT1 Frame_Shift_Del p.G14Dfs*16 0.11 TCGA-EW-A2FV-01 13 58208586 58208586 T - PCDH17 Frame_Shift_Del p.F636Lfs*20 0.19 TCGA-EW-A2FV-01 13 60616892 60616892 C - DIAPH3 Frame_Shift_Del p.S187Lfs*17 0.10 TCGA-EW-A2FV-01 13 72049875 72049875 T - DACH1 Frame_Shift_Del p.K661Nfs*12 0.08 TCGA-EW-A2FV-01 13 73346002 73346002 A - DIS3 Frame_Shift_Del p.F512Lfs*40 0.09 TCGA-EW-A2FV-01 13 74387383 74387383 T - KLF12 Frame_Shift_Del p.S238Vfs*11 0.08 TCGA-EW-A2FV-01 13 76378556 76378556 A - LMO7 Frame_Shift_Del p.S33Vfs*11 0.08 TCGA-EW-A2FV-01 13 77459311 77459311 C - KCTD12 Frame_Shift_Del p.E325Sfs*46 0.10 TCGA-EW-A2FV-01 13 77595879 77595879 G A FBXL3 Silent p.L39L 0.21 TCGA-EW-A2FV-01 13 77635858 77635858 A - MYCBP2 Frame_Shift_Del p.L4243Yfs*30 0.10 TCGA-EW-A2FV-01 13 77655650 77655650 T - MYCBP2 Frame_Shift_Del p.N3739Tfs*11 0.10 TCGA-EW-A2FV-01 13 77818037 77818037 A - MYCBP2 Frame_Shift_Del p.C773Afs*8 0.08 TCGA-EW-A2FV-01 13 80911053 80911053 A - SPRY2 Frame_Shift_Del p.L263Cfs*92 0.09 TCGA-EW-A2FV-01 13 80911622 80911622 G - SPRY2 Frame_Shift_Del p.S74Pfs*38 0.08 TCGA-EW-A2FV-01 13 88330454 88330454 A - SLITRK5 Frame_Shift_Del p.K938Nfs*2 0.10 TCGA-EW-A2FV-01 13 92797167 92797167 G - GPC5 Frame_Shift_Del p.D497Tfs*20 0.08 TCGA-EW-A2FV-01 13 95228625 95228625 T - TGDS Frame_Shift_Del p.I309Yfs*4 0.10 TCGA-EW-A2FV-01 13 95830296 95830296 C - ABCC4 Frame_Shift_Del p.G532Efs*4 0.10 TCGA-EW-A2FV-01 13 99364117 99364117 A - SLC15A1 Frame_Shift_Del p.F297Lfs*32 0.12 TCGA-EW-A2FV-01 13 99896772 99896772 T - UBAC2 Frame_Shift_Del p.L96Cfs*69 0.09 TCGA-EW-A2FV-01 14 100793571 100793571 C - SLC25A47 Frame_Shift_Del p.L65Wfs*48 0.08 TCGA-EW-A2FV-01 14 101005609 101005609 T - BEGAIN Frame_Shift_Del p.K160Sfs*92 0.26 TCGA-EW-A2FV-01 14 101531996 101531996 T - MIR369 RNA 0.08 TCGA-EW-A2FV-01 14 102026634 102026634 G - DIO3 5'Flank 0.13 TCGA-EW-A2FV-01 14 102916099 102916099 G - TECPR2 Frame_Shift_Del p.W1070Cfs*36 0.09 TCGA-EW-A2FV-01 14 103438285 103438285 T - CDC42BPB Frame_Shift_Del p.M619Cfs*48 0.09 TCGA-EW-A2FV-01 14 103996412 103996412 G - TRMT61A Frame_Shift_Del p.A34Hfs*25 0.10 TCGA-EW-A2FV-01 14 104216207 104216207 T - PPP1R13B Frame_Shift_Del p.K298Sfs*8 0.09 TCGA-EW-A2FV-01 14 104457552 104457552 T - TDRD9 Frame_Shift_Del p.L392Cfs*7 0.09 TCGA-EW-A2FV-01 14 104559902 104559902 C - ASPG Frame_Shift_Del p.I90Sfs*79 0.20 TCGA-EW-A2FV-01 14 105356012 105356012 C - CEP170B Frame_Shift_Del p.R1267Gfs*28 0.08 TCGA-EW-A2FV-01 14 105609880 105609880 T - JAG2 Frame_Shift_Del p.L1061Cfs*309 0.13 TCGA-EW-A2FV-01 14 106208237 106208237 T - IGHG1 Frame_Shift_Del p.A222Pfs*20 0.11 TCGA-EW-A2FV-01 14 106208718 106208718 G - IGHG1 Frame_Shift_Del p.K101Nfs*35 0.09 TCGA-EW-A2FV-01 14 106405664 106405664 G - IGHV6-1 Frame_Shift_Del p.L104Cfs*3 0.10 TCGA-EW-A2FV-01 14 20502306 20502306 C - OR4K13 Frame_Shift_Del p.L205Sfs*17 0.09 TCGA-EW-A2FV-01 14 20923820 20923820 A - APEX1 Frame_Shift_Del p.K7Rfs*75 0.11 TCGA-EW-A2FV-01 14 21679522 21679522 C - HNRNPC Intron 0.08 TCGA-EW-A2FV-01 14 21793529 21793529 C - RPGRIP1 Frame_Shift_Del p.Q786Rfs*72 0.09 TCGA-EW-A2FV-01 14 21820780 21820780 T - SUPT16H 3'UTR 0.08 TCGA-EW-A2FV-01 14 21861314 21861314 G - CHD8 Frame_Shift_Del p.P2140Lfs*21 0.09 TCGA-EW-A2FV-01 14 21870202 21870202 A - CHD8 Frame_Shift_Del p.C1326Vfs*10 0.10 TCGA-EW-A2FV-01 14 21875058 21875058 T - CHD8 Frame_Shift_Del p.N955Tfs*30 0.09 TCGA-EW-A2FV-01 14 21956957 21956957 C - TOX4 Frame_Shift_Del p.P177Lfs*108 0.09 TCGA-EW-A2FV-01 14 22090052 22090052 A - TRAV1-1 5'UTR 0.09 TCGA-EW-A2FV-01 14 22964942 22964942 A - TRAJ43 Frame_Shift_Del p.K17Nfs*? 0.09 TCGA-EW-A2FV-01 14 22987819 22987819 G - TRAJ25 Frame_Shift_Del p.K12Rfs*? 0.08 TCGA-EW-A2FV-01 14 23828957 23828957 C - EFS Frame_Shift_Del p.E244Rfs*143 0.08 TCGA-EW-A2FV-01 14 23845072 23845072 C - IL25 Frame_Shift_Del p.R174Vfs*2 0.08 TCGA-EW-A2FV-01 14 23851266 23851266 T - MYH6 Frame_Shift_Del p.M1935Cfs*? 0.09 TCGA-EW-A2FV-01 14 23866789 23866789 T - MYH6 Frame_Shift_Del p.K642Rfs*19 0.09 TCGA-EW-A2FV-01 14 24109018 24109018 G - DHRS2 Frame_Shift_Del p.G113Afs*15 0.09 TCGA-EW-A2FV-01 14 24619367 24619367 C - RNF31 Frame_Shift_Del p.W304Gfs*9 0.09 TCGA-EW-A2FV-01 14 24650919 24650919 G - IPO4 Frame_Shift_Del p.Q980Rfs*12 0.10 TCGA-EW-A2FV-01 14 24845996 24845996 G - NFATC4 Frame_Shift_Del p.A916Lfs*77 0.09 TCGA-EW-A2FV-01 14 24880334 24880334 T - NYNRIN Frame_Shift_Del p.F824Sfs*18 0.12 TCGA-EW-A2FV-01 14 25043581 25043581 C - CTSG Frame_Shift_Del p.G155Efs*10 0.09 TCGA-EW-A2FV-01 14 25100294 25100294 T - GZMB Frame_Shift_Del p.T243Pfs*2 0.09 TCGA-EW-A2FV-01 14 25101580 25101580 G - GZMB Frame_Shift_Del p.H97Ifs*40 0.08 TCGA-EW-A2FV-01 14 31204015 31204015 T - SCFD1 Frame_Shift_Del p.L620Yfs*14 0.09 TCGA-EW-A2FV-01 14 31562144 31562144 T - AP4S1 Frame_Shift_Del p.L114Wfs*6 0.08 TCGA-EW-A2FV-01 14 34145580 34145580 C - NPAS3 Frame_Shift_Del p.E243Sfs*11 0.10 TCGA-EW-A2FV-01 14 35497348 35497348 A - SRP54 Frame_Shift_Del p.M462Wfs*4 0.08 TCGA-EW-A2FV-01 14 36064949 36064949 T - RALGAPA1 Frame_Shift_Del p.N1861Tfs*6 0.10 TCGA-EW-A2FV-01 14 47342722 47342722 A - MDGA2 Frame_Shift_Del p.F889Sfs*3 0.09 TCGA-EW-A2FV-01 14 50218464 50218464 A - KLHDC1 Frame_Shift_Del p.K399Nfs*17 0.09 TCGA-EW-A2FV-01 14 50267196 50267196 C - NEMF Frame_Shift_Del p.E772Kfs*4 0.09 TCGA-EW-A2FV-01 14 50472424 50472424 G - C14orf182 Frame_Shift_Del p.Q32Kfs*44 0.08 TCGA-EW-A2FV-01 14 50790756 50790756 A - ATP5S Frame_Shift_Del p.T154Pfs*7 0.09 TCGA-EW-A2FV-01 14 51225050 51225050 T - NIN Frame_Shift_Del p.T900Hfs*6 0.08 TCGA-EW-A2FV-01 14 51372197 51372197 T - PYGL Frame_Shift_Del p.E820Nfs*14 0.08 TCGA-EW-A2FV-01 14 51721091 51721091 A - TMX1 Frame_Shift_Del p.V235Wfs*32 0.08 TCGA-EW-A2FV-01 14 52496264 52496264 C - NID2 Splice_Site p.X801_splice 0.08 TCGA-EW-A2FV-01 14 53067023 53067023 A - GPR137C Frame_Shift_Del p.M229Cfs*24 0.08 TCGA-EW-A2FV-01 14 54944812 54944812 A - GMFB Frame_Shift_Del p.H142Tfs*14 0.09 TCGA-EW-A2FV-01 14 55369173 55369173 T - GCH1 Frame_Shift_Del p.N70Tfs*10 0.10 TCGA-EW-A2FV-01 14 55636146 55636146 C - DLGAP5 Frame_Shift_Del p.D507Mfs*11 0.08 TCGA-EW-A2FV-01 14 55650395 55650395 T - DLGAP5 Frame_Shift_Del p.K105Nfs*2 0.08 TCGA-EW-A2FV-01 14 55881109 55881109 A - TBPL2 Frame_Shift_Del p.F372Lfs*33 0.08 TCGA-EW-A2FV-01 14 58599908 58599908 A - C14orf37 Frame_Shift_Del p.P508Lfs*54 0.10 TCGA-EW-A2FV-01 14 58825911 58825911 A - ARID4A Frame_Shift_Del p.K640Nfs*32 0.15 TCGA-EW-A2FV-01 14 58838672 58838672 C - ARID4A Frame_Shift_Del p.P1248Hfs*7 0.12 TCGA-EW-A2FV-01 14 59790910 59790910 C - DAAM1 Frame_Shift_Del p.I281Sfs*29 0.08 TCGA-EW-A2FV-01 14 59819335 59819335 T - DAAM1 Frame_Shift_Del p.F762Lfs*3 0.09 TCGA-EW-A2FV-01 14 63483604 63483604 A - KCNH5 Frame_Shift_Del p.C48Vfs*25 0.08 TCGA-EW-A2FV-01 14 64688251 64688251 G - SYNE2 Intron 0.08 TCGA-EW-A2FV-01 14 64724019 64724019 A - ESR2 Frame_Shift_Del p.L339* 0.08 TCGA-EW-A2FV-01 14 65007894 65007894 G - HSPA2 Frame_Shift_Del p.E111Rfs*18 0.12 TCGA-EW-A2FV-01 14 66975286 66975286 A - GPHN Frame_Shift_Del p.I15Sfs*8 0.09 TCGA-EW-A2FV-01 14 67432037 67432037 C - GPHN Frame_Shift_Del p.P320Qfs*37 0.09 TCGA-EW-A2FV-01 14 67674993 67674993 A - FAM71D Frame_Shift_Del p.K330Nfs*8 0.14 TCGA-EW-A2FV-01 14 67805437 67805437 T - ATP6V1D Frame_Shift_Del p.K215Nfs*55 0.09 TCGA-EW-A2FV-01 14 68026362 68026362 A - PLEKHH1 Frame_Shift_Del p.A128Lfs*8 0.15 TCGA-EW-A2FV-01 14 68189329 68189329 A - RDH12 5'UTR 0.10 TCGA-EW-A2FV-01 14 68191191 68191191 A - RDH12 Frame_Shift_Del p.K24Sfs*18 0.10 TCGA-EW-A2FV-01 14 68301855 68301855 C - RAD51B Frame_Shift_Del p.L87Ffs*33 0.09 TCGA-EW-A2FV-01 14 68944421 68944421 T - RAD51B Intron 0.09 TCGA-EW-A2FV-01 14 69259606 69259606 A - ZFP36L1 Frame_Shift_Del p.L17Yfs*63 0.11 TCGA-EW-A2FV-01 14 69351524 69351524 C - ACTN1 Frame_Shift_Del p.A488Pfs*2 0.09 TCGA-EW-A2FV-01 14 69908918 69908918 T - SLC39A9 Frame_Shift_Del p.L114Wfs*63 0.09 TCGA-EW-A2FV-01 14 70442472 70442472 C - SMOC1 Frame_Shift_Del p.P141Rfs*27 0.09 TCGA-EW-A2FV-01 14 71502835 71502835 T - PCNX Frame_Shift_Del p.F1277Lfs*5 0.09 TCGA-EW-A2FV-01 14 73712371 73712371 C - PAPLN Frame_Shift_Del p.A68Pfs*51 0.12 TCGA-EW-A2FV-01 14 74180109 74180109 G - PNMA1 Frame_Shift_Del p.R79Gfs*24 0.08 TCGA-EW-A2FV-01 14 74991861 74991861 G - LTBP2 Frame_Shift_Del p.S833Pfs*6 0.08 TCGA-EW-A2FV-01 14 75323621 75323621 T - PROX2 Frame_Shift_Del p.K270Nfs*51 0.10 TCGA-EW-A2FV-01 14 75377969 75377969 G - RPS6KL1 Frame_Shift_Del p.H216Tfs*34 0.11 TCGA-EW-A2FV-01 14 75386604 75386604 C - RPS6KL1 Frame_Shift_Del p.E112Rfs*11 0.11 TCGA-EW-A2FV-01 14 75472636 75472636 T - EIF2B2 Frame_Shift_Del p.F223Lfs*10 0.08 TCGA-EW-A2FV-01 14 76211474 76211474 A - TTLL5 Frame_Shift_Del p.N441Tfs*32 0.10 TCGA-EW-A2FV-01 14 76425613 76425613 G - TGFB3 Frame_Shift_Del p.L386* 0.07 TCGA-EW-A2FV-01 14 77332329 77332329 A - C14orf166B Frame_Shift_Del p.I425Sfs*10 0.08 TCGA-EW-A2FV-01 14 77928540 77928540 G - AHSA1 Frame_Shift_Del p.E104Rfs*18 0.08 TCGA-EW-A2FV-01 14 77934479 77934479 A - AHSA1 Frame_Shift_Del p.K249Sfs*5 0.14 TCGA-EW-A2FV-01 14 78184436 78184436 C - SNW1 Frame_Shift_Del p.E536Nfs*10 0.10 TCGA-EW-A2FV-01 14 88936003 88936003 C - PTPN21 Frame_Shift_Del p.R1025Sfs*20 0.09 TCGA-EW-A2FV-01 14 89154665 89154665 T - EML5 Frame_Shift_Del p.T898Qfs*2 0.09 TCGA-EW-A2FV-01 14 89171268 89171268 T - EML5 Frame_Shift_Del p.S663Vfs*71 0.08 TCGA-EW-A2FV-01 14 90442127 90442127 A - TDP1 Frame_Shift_Del p.K254Sfs*13 0.08 TCGA-EW-A2FV-01 14 91084275 91084275 G - TTC7B Frame_Shift_Del p.S623Vfs*10 0.08 TCGA-EW-A2FV-01 14 91975903 91975903 C - SMEK1 Frame_Shift_Del p.G30Afs*6 0.11 TCGA-EW-A2FV-01 14 93119239 93119239 C - RIN3 Frame_Shift_Del p.F616Lfs*15 0.13 TCGA-EW-A2FV-01 14 94156550 94156550 A - UNC79 Frame_Shift_Del p.N2254Mfs*25 0.10 TCGA-EW-A2FV-01 14 94744956 94744956 A - PPP4R4 Frame_Shift_Del p.K867Nfs*12 0.10 TCGA-EW-A2FV-01 14 94849478 94849478 G - SERPINA1 Frame_Shift_Del p.Q33Rfs*47 0.08 TCGA-EW-A2FV-01 14 95582079 95582079 A - DICER1 Frame_Shift_Del p.F611Sfs*6 0.08 TCGA-EW-A2FV-01 14 95582831 95582831 T - DICER1 Frame_Shift_Del p.S571Vfs*16 0.10 TCGA-EW-A2FV-01 14 99865152 99865152 T - SETD3 Frame_Shift_Del p.N550Tfs*4 0.10 TCGA-EW-A2FV-01 14 99959862 99959862 C - CCNK Frame_Shift_Del p.L71Wfs*5 0.09 TCGA-EW-A2FV-01 15 101440808 101440808 G - ALDH1A3 Frame_Shift_Del p.G305Efs*62 0.13 TCGA-EW-A2FV-01 15 101972239 101972239 C - PCSK6 Frame_Shift_Del p.A156Pfs*28 0.10 TCGA-EW-A2FV-01 15 102261353 102261353 G - TARSL2 Frame_Shift_Del p.P181Lfs*17 0.09 TCGA-EW-A2FV-01 15 102263330 102263330 T - TARSL2 Frame_Shift_Del p.K112Rfs*4 0.08 TCGA-EW-A2FV-01 15 22855113 22855113 A - TUBGCP5 Frame_Shift_Del p.M527* 0.12 TCGA-EW-A2FV-01 15 22933571 22933571 T - CYFIP1 Frame_Shift_Del p.L195Yfs*36 0.09 TCGA-EW-A2FV-01 15 23443527 23443527 A - AC100757.1 5'Flank 0.08 TCGA-EW-A2FV-01 15 25213130 25213130 T - SNURF Frame_Shift_Del p.F55Sfs*5 0.08 TCGA-EW-A2FV-01 15 25584369 25584369 A - UBE3A Frame_Shift_Del p.L848Yfs*16 0.08 TCGA-EW-A2FV-01 15 28200338 28200338 T - OCA2 Frame_Shift_Del p.N603Ifs*25 0.09 TCGA-EW-A2FV-01 15 28508243 28508243 G - HERC2 Frame_Shift_Del p.P648Qfs*3 0.10 TCGA-EW-A2FV-01 15 30064309 30064309 A - TJP1 Frame_Shift_Del p.F90Lfs*6 0.12 TCGA-EW-A2FV-01 15 31330012 31330012 C - TRPM1 Frame_Shift_Del p.D842Mfs*67 0.10 TCGA-EW-A2FV-01 15 32460212 32460212 C - CHRNA7 Frame_Shift_Del p.P384Rfs*17 0.10 TCGA-EW-A2FV-01 15 33256309 33256309 T - FMN1 Frame_Shift_Del p.K823Rfs*17 0.09 TCGA-EW-A2FV-01 15 33357208 33357208 G - FMN1 Frame_Shift_Del p.P481Qfs*12 0.09 TCGA-EW-A2FV-01 15 33858932 33858932 C - RYR3 Frame_Shift_Del p.Q401Sfs*36 0.08 TCGA-EW-A2FV-01 15 33920747 33920747 A - RYR3 Frame_Shift_Del p.I885* 0.08 TCGA-EW-A2FV-01 15 33999200 33999200 C - RYR3 Frame_Shift_Del p.I2190Lfs*10 0.10 TCGA-EW-A2FV-01 15 34110819 34110819 A - RYR3 Frame_Shift_Del p.K3548Nfs*36 0.11 TCGA-EW-A2FV-01 15 34158896 34158896 T - AVEN Frame_Shift_Del p.N336Tfs*25 0.10 TCGA-EW-A2FV-01 15 34519931 34519931 T - EMC4 Frame_Shift_Del p.M82* 0.09 TCGA-EW-A2FV-01 15 34527413 34527413 C - SLC12A6 Frame_Shift_Del p.P1111Hfs*15 0.08 TCGA-EW-A2FV-01 15 34551060 34551060 T - SLC12A6 Frame_Shift_Del p.H166Lfs*37 0.08 TCGA-EW-A2FV-01 15 34634231 34634231 G - NOP10 Frame_Shift_Del p.R45Efs*12 0.09 TCGA-EW-A2FV-01 15 34673736 34673736 G - GOLGA8A Frame_Shift_Del p.P563Lfs*63 0.08 TCGA-EW-A2FV-01 15 40324988 40324988 T - EIF2AK4 Frame_Shift_Del p.L1588Yfs*3 0.08 TCGA-EW-A2FV-01 15 40330579 40330579 T - SRP14 Frame_Shift_Del p.K38Nfs*21 0.11 TCGA-EW-A2FV-01 15 40631007 40631007 C - C15orf52 Frame_Shift_Del p.G154Vfs*5 0.09 TCGA-EW-A2FV-01 15 40632158 40632158 C T C15orf52 Missense_Mutation p.R68Q 0.16 deleterious(0) probably_damaging(0.979) TCGA-EW-A2FV-01 15 40861565 40861565 G - RPUSD2 Frame_Shift_Del p.V11Ffs*39 0.10 TCGA-EW-A2FV-01 15 40895118 40895118 T - CASC5 5'UTR 0.11 TCGA-EW-A2FV-01 15 40914593 40914593 A - CASC5 Frame_Shift_Del p.N738Ifs*6 0.09 TCGA-EW-A2FV-01 15 41192386 41192386 C - VPS18 Frame_Shift_Del p.L458Sfs*23 0.09 TCGA-EW-A2FV-01 15 41476352 41476352 A - EXD1 Frame_Shift_Del p.L441Yfs*3 0.09 TCGA-EW-A2FV-01 15 42360893 42360893 C - PLA2G4D 3'UTR 0.10 TCGA-EW-A2FV-01 15 42377319 42377319 T - PLA2G4D Frame_Shift_Del p.N149Tfs*41 0.09 TCGA-EW-A2FV-01 15 42434187 42434187 C - PLA2G4F Frame_Shift_Del p.A849Pfs*23 0.13 TCGA-EW-A2FV-01 15 42462010 42462010 T - VPS39 Frame_Shift_Del p.K382Sfs*22 0.09 TCGA-EW-A2FV-01 15 42646624 42646624 A - GANC 3'Flank 0.09 TCGA-EW-A2FV-01 15 42738816 42738816 T - ZNF106 Frame_Shift_Del p.N1036Ifs*19 0.08 TCGA-EW-A2FV-01 15 43028536 43028536 A - CDAN1 Frame_Shift_Del p.F178Sfs*4 0.12 TCGA-EW-A2FV-01 15 43038249 43038249 A - TTBK2 Frame_Shift_Del p.L1160Cfs*57 0.08 TCGA-EW-A2FV-01 15 43038327 43038327 G - TTBK2 Frame_Shift_Del p.P1134Lfs*83 0.09 TCGA-EW-A2FV-01 15 43627952 43627952 C - ADAL Frame_Shift_Del p.Q42Rfs*11 0.10 TCGA-EW-A2FV-01 15 44965489 44965489 G - PATL2 Frame_Shift_Del p.S131Hfs*11 0.08 TCGA-EW-A2FV-01 15 45406911 45406911 A - DUOXA2 Frame_Shift_Del p.S37Afs*19 0.09 TCGA-EW-A2FV-01 15 45440146 45440146 T - DUOX1 Frame_Shift_Del p.F865Lfs*16 0.08 TCGA-EW-A2FV-01 15 45564568 45564568 C - SLC28A2 Frame_Shift_Del p.I577Sfs*47 0.09 TCGA-EW-A2FV-01 15 48539570 48539570 T - SLC12A1 Frame_Shift_Del p.F534Lfs*12 0.11 TCGA-EW-A2FV-01 15 49254896 49254896 T - SHC4 Frame_Shift_Del p.N106Tfs*12 0.14 TCGA-EW-A2FV-01 15 49437229 49437229 T - COPS2 Frame_Shift_Del p.N34Ifs*9 0.09 TCGA-EW-A2FV-01 15 49447736 49447736 C - COPS2 Frame_Shift_Del p.E14Rfs*29 0.08 TCGA-EW-A2FV-01 15 50534476 50534476 G - HDC Frame_Shift_Del p.P657Lfs*60 0.09 TCGA-EW-A2FV-01 15 50570928 50570928 T - GABPB1 Frame_Shift_Del p.K363Nfs*7 0.10 TCGA-EW-A2FV-01 15 50884232 50884232 T - TRPM7 Frame_Shift_Del p.K1400Nfs*42 0.10 TCGA-EW-A2FV-01 15 51773321 51773321 A - DMXL2 Frame_Shift_Del p.G1995Vfs*2 0.08 TCGA-EW-A2FV-01 15 51806652 51806652 A - DMXL2 Frame_Shift_Del p.Q878Sfs*17 0.11 TCGA-EW-A2FV-01 15 51975488 51975488 A - SCG3 Frame_Shift_Del p.I87Lfs*8 0.08 TCGA-EW-A2FV-01 15 52230402 52230402 T - LEO1 Frame_Shift_Del p.K651Sfs*6 0.10 TCGA-EW-A2FV-01 15 52472006 52472006 C - GNB5 Frame_Shift_Del p.G66Afs*30 0.13 TCGA-EW-A2FV-01 15 54792289 54792289 T - UNC13C Frame_Shift_Del p.F1692Lfs*6 0.11 TCGA-EW-A2FV-01 15 54803997 54803997 A - UNC13C Frame_Shift_Del p.M1811Cfs*10 0.08 TCGA-EW-A2FV-01 15 55783345 55783345 T - DYX1C1 Frame_Shift_Del p.K127Nfs*4 0.11 TCGA-EW-A2FV-01 15 55839265 55839265 A - PYGO1 Frame_Shift_Del p.F72Lfs*94 0.11 TCGA-EW-A2FV-01 15 56390391 56390391 T - RFX7 Frame_Shift_Del p.K332Sfs*10 0.09 TCGA-EW-A2FV-01 15 58837977 58837977 C - LIPC Frame_Shift_Del p.S206Afs*25 0.13 TCGA-EW-A2FV-01 15 58913796 58913796 T - ADAM10 Frame_Shift_Del p.N462Mfs*4 0.08 TCGA-EW-A2FV-01 15 59383311 59383311 G - RNF111 Frame_Shift_Del p.T910Qfs*41 0.08 TCGA-EW-A2FV-01 15 59406663 59406663 G - CCNB2 Frame_Shift_Del p.D97Mfs*4 0.08 TCGA-EW-A2FV-01 15 59450524 59450524 T - MYO1E Frame_Shift_Del p.N947Mfs*6 0.08 TCGA-EW-A2FV-01 15 60298082 60298082 C - FOXB1 Frame_Shift_Del p.S309Afs*? 0.16 TCGA-EW-A2FV-01 15 60643940 60643940 T - ANXA2 Frame_Shift_Del p.N272Mfs*4 0.11 TCGA-EW-A2FV-01 15 62315656 62315656 T - VPS13C Frame_Shift_Del p.N193Mfs*4 0.10 TCGA-EW-A2FV-01 15 63901260 63901260 G - HERC1 3'UTR 0.09 TCGA-EW-A2FV-01 15 63908808 63908808 C - HERC1 Frame_Shift_Del p.V4588Lfs*28 0.11 TCGA-EW-A2FV-01 15 63937272 63937272 A - HERC1 Frame_Shift_Del p.C3701Wfs*14 0.09 TCGA-EW-A2FV-01 15 63942013 63942013 C - HERC1 Frame_Shift_Del p.G3553Dfs*9 0.09 TCGA-EW-A2FV-01 15 64163140 64163140 A - MIR422A RNA 0.09 TCGA-EW-A2FV-01 15 65627647 65627647 C - IGDCC3 Frame_Shift_Del p.A223Pfs*27 0.11 TCGA-EW-A2FV-01 15 66262895 66262895 C - MEGF11 Frame_Shift_Del p.D299Tfs*77 0.09 TCGA-EW-A2FV-01 15 68378890 68378890 C - PIAS1 Frame_Shift_Del p.P91Hfs*46 0.09 TCGA-EW-A2FV-01 15 68506678 68506678 C - CLN6 Frame_Shift_Del p.D83Tfs*33 0.09 TCGA-EW-A2FV-01 15 69320675 69320675 A - NOX5 Frame_Shift_Del p.K99Nfs*71 0.08 TCGA-EW-A2FV-01 15 69323918 69323918 G - NOX5 Frame_Shift_Del p.A130Lfs*40 0.17 TCGA-EW-A2FV-01 15 70959830 70959830 T - UACA Frame_Shift_Del p.T1065Qfs*4 0.09 TCGA-EW-A2FV-01 15 71124523 71124523 G - LARP6 Frame_Shift_Del p.G449Vfs*18 0.11 TCGA-EW-A2FV-01 15 71403547 71403547 A - CT62 Frame_Shift_Del p.L119Cfs*46 0.10 TCGA-EW-A2FV-01 15 71404582 71404582 G - CT62 Frame_Shift_Del p.H14Tfs*50 0.08 TCGA-EW-A2FV-01 15 72492944 72492944 T - PKM Frame_Shift_Del p.T454Pfs*37 0.12 TCGA-EW-A2FV-01 15 72636459 72636459 G - HEXA Frame_Shift_Del p.L517Sfs*3 0.10 TCGA-EW-A2FV-01 15 74177193 74177193 A - TBC1D21 Frame_Shift_Del p.K147Rfs*5 0.10 TCGA-EW-A2FV-01 15 74425189 74425189 C - ISLR2 Frame_Shift_Del p.H32Tfs*22 0.09 TCGA-EW-A2FV-01 15 74709039 74709039 T - SEMA7A Frame_Shift_Del p.A227Pfs*59 0.10 TCGA-EW-A2FV-01 15 74948255 74948255 A - EDC3 Frame_Shift_Del p.F213Lfs*50 0.08 TCGA-EW-A2FV-01 15 75185113 75185113 C - MPI Frame_Shift_Del p.P153Qfs*6 0.16 TCGA-EW-A2FV-01 15 75705175 75705175 G - SIN3A Frame_Shift_Del p.Q229Sfs*58 0.08 TCGA-EW-A2FV-01 15 75782587 75782587 T - PTPN9 Frame_Shift_Del p.T342Lfs*3 0.08 TCGA-EW-A2FV-01 15 75949415 75949415 G - SNX33 Frame_Shift_Del p.A529Pfs*3 0.09 TCGA-EW-A2FV-01 15 75979784 75979784 G - CSPG4 Frame_Shift_Del p.R1208Afs*21 0.13 TCGA-EW-A2FV-01 15 76225303 76225303 T - FBXO22 Frame_Shift_Del p.F358Lfs*11 0.08 TCGA-EW-A2FV-01 15 76452436 76452436 T - C15orf27 Frame_Shift_Del p.S129Pfs*9 0.10 TCGA-EW-A2FV-01 15 77324729 77324729 C - PSTPIP1 Frame_Shift_Del p.A280Lfs*16 0.18 TCGA-EW-A2FV-01 15 78577660 78577660 T - WDR61 Frame_Shift_Del p.V258Ffs*23 0.09 TCGA-EW-A2FV-01 15 78917528 78917528 G - CHRNB4 Frame_Shift_Del p.L482Sfs*77 0.10 TCGA-EW-A2FV-01 15 78923425 78923425 A - CHRNB4 Frame_Shift_Del p.Y118Tfs*16 0.12 TCGA-EW-A2FV-01 15 79320157 79320157 T - RASGRF1 Frame_Shift_Del p.N436Tfs*7 0.11 TCGA-EW-A2FV-01 15 79350705 79350705 C - RASGRF1 Frame_Shift_Del p.E168Rfs*7 0.09 TCGA-EW-A2FV-01 15 80450468 80450468 T - FAH Frame_Shift_Del p.F50Lfs*42 0.08 TCGA-EW-A2FV-01 15 81660642 81660642 A - TMC3 Frame_Shift_Del p.F88Lfs*5 0.09 TCGA-EW-A2FV-01 15 84683360 84683360 T - ADAMTSL3 Frame_Shift_Del p.F1348Sfs*21 0.09 TCGA-EW-A2FV-01 15 85188834 85188834 A - WDR73 Frame_Shift_Del p.C251Vfs*12 0.09 TCGA-EW-A2FV-01 15 85342375 85342375 C - ZNF592 Frame_Shift_Del p.N1026Tfs*14 0.10 TCGA-EW-A2FV-01 15 85448792 85448792 G - SLC28A1 Frame_Shift_Del p.G210Dfs*33 0.11 TCGA-EW-A2FV-01 15 85664102 85664102 A - PDE8A Frame_Shift_Del p.T604Pfs*33 0.10 TCGA-EW-A2FV-01 15 86124745 86124745 C - AKAP13 Frame_Shift_Del p.P1150Qfs*3 0.09 TCGA-EW-A2FV-01 15 86686990 86686990 C - AGBL1 Frame_Shift_Del p.L14Wfs*2 0.10 TCGA-EW-A2FV-01 15 88576179 88576179 G - NTRK3 Frame_Shift_Del p.D499Tfs*7 0.09 TCGA-EW-A2FV-01 15 88679751 88679751 G - NTRK3 Frame_Shift_Del p.L238Ffs*7 0.10 TCGA-EW-A2FV-01 15 89382032 89382032 C - ACAN Frame_Shift_Del p.P71Qfs*14 0.09 TCGA-EW-A2FV-01 15 90016053 90016053 G - RHCG Frame_Shift_Del p.T452Pfs*52 0.09 TCGA-EW-A2FV-01 15 90771740 90771740 C - SEMA4B Frame_Shift_Del p.P795Rfs*46 0.23 TCGA-EW-A2FV-01 15 90774363 90774363 C - CIB1 Frame_Shift_Del p.S145Vfs*5 0.09 TCGA-EW-A2FV-01 15 90999435 90999435 A - IQGAP1 Frame_Shift_Del p.K556Rfs*28 0.08 TCGA-EW-A2FV-01 15 91560214 91560214 G - VPS33B Frame_Shift_Del p.P73Qfs*41 0.08 TCGA-EW-A2FV-01 15 92669464 92669464 G - SLCO3A1 Frame_Shift_Del p.V451Lfs*92 0.09 TCGA-EW-A2FV-01 15 99440041 99440041 A - IGF1R Frame_Shift_Del p.T338Qfs*47 0.09 TCGA-EW-A2FV-01 15 99511700 99511700 C - PGPEP1L 3'UTR 0.12 TCGA-EW-A2FV-01 15 99514357 99514357 T - PGPEP1L Frame_Shift_Del p.T18Qfs*12 0.12 TCGA-EW-A2FV-01 16 11362855 11362855 G - TNP2 Frame_Shift_Del p.H89Tfs*25 0.12 TCGA-EW-A2FV-01 16 11362869 11362869 T - TNP2 Frame_Shift_Del p.K84Rfs*3 0.09 TCGA-EW-A2FV-01 16 1245019 1245019 C - CACNA1H Frame_Shift_Del p.L117Wfs*67 0.11 TCGA-EW-A2FV-01 16 1265020 1265020 T - CACNA1H Frame_Shift_Del p.F1660Lfs*7 0.10 TCGA-EW-A2FV-01 16 1265578 1265578 G - CACNA1H Frame_Shift_Del p.Q1744Kfs*42 0.12 TCGA-EW-A2FV-01 16 12662434 12662434 G - SNX29 Frame_Shift_Del p.G798Vfs*46 0.11 TCGA-EW-A2FV-01 16 133247 133247 C - MPG Frame_Shift_Del p.S172Afs*85 0.08 TCGA-EW-A2FV-01 16 13329191 13329191 G - SHISA9 Frame_Shift_Del p.G401Efs*22 0.12 TCGA-EW-A2FV-01 16 1485148 1485148 T - CCDC154 Frame_Shift_Del p.N552Tfs*55 0.11 TCGA-EW-A2FV-01 16 14982980 14982980 C - NOMO1 Frame_Shift_Del p.L1118Sfs*26 0.11 TCGA-EW-A2FV-01 16 1556307 1556307 C - TELO2 Frame_Shift_Del p.L703Sfs*10 0.10 TCGA-EW-A2FV-01 16 15932054 15932054 T - MYH11 Frame_Shift_Del p.N19Tfs*61 0.13 TCGA-EW-A2FV-01 16 16138408 16138408 C - ABCC1 Frame_Shift_Del p.P305Hfs*23 0.09 TCGA-EW-A2FV-01 16 16170245 16170245 C - ABCC1 Frame_Shift_Del p.T660Hfs*2 0.09 TCGA-EW-A2FV-01 16 16269812 16269812 G - ABCC6 Frame_Shift_Del p.R875Efs*56 0.08 TCGA-EW-A2FV-01 16 1872971 1872971 G - HAGH Frame_Shift_Del p.M49* 0.08 TCGA-EW-A2FV-01 16 18844304 18844304 C - SMG1 Frame_Shift_Del p.G2917Dfs*24 0.09 TCGA-EW-A2FV-01 16 18859182 18859182 T - SMG1 Frame_Shift_Del p.I1933Lfs*2 0.11 TCGA-EW-A2FV-01 16 18908216 18908216 C - SMG1 Frame_Shift_Del p.G52Vfs*57 0.10 TCGA-EW-A2FV-01 16 19775375 19775375 A - IQCK Frame_Shift_Del p.E184Sfs*16 0.10 TCGA-EW-A2FV-01 16 1990789 1990789 A - MSRB1 Frame_Shift_Del p.F103Lfs*? 0.08 TCGA-EW-A2FV-01 16 2000853 2000853 G - RPL3L Frame_Shift_Del p.H165Tfs*4 0.09 TCGA-EW-A2FV-01 16 2027163 2027163 T - TBL3 Frame_Shift_Del p.F517Sfs*51 0.11 TCGA-EW-A2FV-01 16 20327311 20327311 G - GP2 Frame_Shift_Del p.R493Gfs*3 0.09 TCGA-EW-A2FV-01 16 2043359 2043359 C - SYNGR3 3'UTR 0.08 TCGA-EW-A2FV-01 16 20837243 20837243 A - AC004381.6 Frame_Shift_Del p.N266Tfs*21 0.11 TCGA-EW-A2FV-01 16 20838735 20838735 T - AC004381.6 Frame_Shift_Del p.F341Lfs*6 0.09 TCGA-EW-A2FV-01 16 20999344 20999344 A - DNAH3 Frame_Shift_Del p.F2215Lfs*6 0.12 TCGA-EW-A2FV-01 16 21132113 21132113 T - DNAH3 Frame_Shift_Del p.A550Qfs*19 0.08 TCGA-EW-A2FV-01 16 2150447 2150447 G - PKD1 Frame_Shift_Del p.P3173Rfs*143 0.09 TCGA-EW-A2FV-01 16 2165439 2165439 G - PKD1 Frame_Shift_Del p.Y680Mfs*105 0.19 TCGA-EW-A2FV-01 16 21709179 21709179 A - OTOA Frame_Shift_Del p.I276Lfs*4 0.09 TCGA-EW-A2FV-01 16 21721321 21721321 C - OTOA Frame_Shift_Del p.E408Rfs*58 0.10 TCGA-EW-A2FV-01 16 22126711 22126711 G - VWA3A Frame_Shift_Del p.G245Efs*9 0.10 TCGA-EW-A2FV-01 16 22128463 22128463 G - VWA3A Frame_Shift_Del p.G320Afs*64 0.09 TCGA-EW-A2FV-01 16 2213955 2213955 T - TRAF7 Frame_Shift_Del p.F12Sfs*116 0.09 TCGA-EW-A2FV-01 16 22143008 22143008 G - VWA3A Frame_Shift_Del p.G611Efs*32 0.09 TCGA-EW-A2FV-01 16 22335684 22335684 T - POLR3E Frame_Shift_Del p.F360Sfs*15 0.10 TCGA-EW-A2FV-01 16 2256365 2256365 A - MLST8 Frame_Shift_Del p.N46Mfs*11 0.10 TCGA-EW-A2FV-01 16 23080157 23080157 G - USP31 Frame_Shift_Del p.P1090Lfs*65 0.11 TCGA-EW-A2FV-01 16 23382660 23382660 C - SCNN1B Frame_Shift_Del p.F309Sfs*10 0.10 TCGA-EW-A2FV-01 16 23457221 23457221 T - COG7 Frame_Shift_Del p.K77Nfs*7 0.09 TCGA-EW-A2FV-01 16 2349448 2349448 C - ABCA3 Frame_Shift_Del p.G566Afs*56 0.23 TCGA-EW-A2FV-01 16 2354075 2354075 C - ABCA3 Frame_Shift_Del p.M455Cfs*12 0.12 TCGA-EW-A2FV-01 16 23700014 23700014 C - PLK1 Frame_Shift_Del p.I408Sfs*47 0.22 TCGA-EW-A2FV-01 16 24942176 24942176 G - ARHGAP17 Frame_Shift_Del p.P815Lfs*22 0.08 TCGA-EW-A2FV-01 16 25172506 25172506 A - LCMT1 Frame_Shift_Del p.K184Nfs*4 0.10 TCGA-EW-A2FV-01 16 2732776 2732776 C - KCTD5 Frame_Shift_Del p.D77Ifs*15 0.13 TCGA-EW-A2FV-01 16 27503703 27503703 T - GTF3C1 Frame_Shift_Del p.N1036Tfs*15 0.12 TCGA-EW-A2FV-01 16 27506190 27506190 G - GTF3C1 Frame_Shift_Del p.P891Qfs*44 0.09 TCGA-EW-A2FV-01 16 2763622 2763622 T - PRSS27 Frame_Shift_Del p.S196Afs*51 0.08 TCGA-EW-A2FV-01 16 2770164 2770164 C - PRSS27 5'UTR 0.12 TCGA-EW-A2FV-01 16 27765529 27765529 C - KIAA0556 Frame_Shift_Del p.Q1198Kfs*17 0.08 TCGA-EW-A2FV-01 16 2815516 2815516 C - SRRM2 Frame_Shift_Del p.K1664Nfs*34 0.08 TCGA-EW-A2FV-01 16 2818195 2818195 T - SRRM2 Frame_Shift_Del p.S2556Lfs*21 0.08 TCGA-EW-A2FV-01 16 28192299 28192299 A - XPO6 Frame_Shift_Del p.H20Tfs*12 0.08 TCGA-EW-A2FV-01 16 2820625 2820625 C - SRRM2 Frame_Shift_Del p.R2720Gfs*25 0.14 TCGA-EW-A2FV-01 16 2821514 2821514 G - TCEB2 Frame_Shift_Del p.Q149Kfs*23 0.08 TCGA-EW-A2FV-01 16 28602911 28602911 C - CCDC101 Frame_Shift_Del p.Q257Rfs*? 0.11 TCGA-EW-A2FV-01 16 28617419 28617419 G - SULT1A1 Frame_Shift_Del p.Q245Rfs*12 0.09 TCGA-EW-A2FV-01 16 28619679 28619679 G - SULT1A1 Frame_Shift_Del p.P102Hfs*4 0.12 TCGA-EW-A2FV-01 16 2868947 2868947 G - PRSS21 Frame_Shift_Del p.Y178Tfs*22 0.11 TCGA-EW-A2FV-01 16 28843540 28843540 C - ATXN2L Frame_Shift_Del p.P447Rfs*34 0.14 TCGA-EW-A2FV-01 16 29810441 29810441 G - KIF22 Frame_Shift_Del p.T233Lfs*2 0.13 TCGA-EW-A2FV-01 16 2983541 2983541 C - FLYWCH1 Frame_Shift_Del p.E403Rfs*19 0.10 TCGA-EW-A2FV-01 16 29997167 29997167 G - TAOK2 Frame_Shift_Del p.D660Tfs*7 0.15 TCGA-EW-A2FV-01 16 30005439 30005439 C - HIRIP3 Frame_Shift_Del p.E343Nfs*27 0.09 TCGA-EW-A2FV-01 16 30365545 30365545 C - CD2BP2 Frame_Shift_Del p.S60Pfs*12 0.08 TCGA-EW-A2FV-01 16 30456480 30456480 T - SEPHS2 Frame_Shift_Del p.K190Rfs*? 0.09 TCGA-EW-A2FV-01 16 30484210 30484210 T - ITGAL Frame_Shift_Del p.F19Sfs*67 0.08 TCGA-EW-A2FV-01 16 30620869 30620869 G - ZNF689 Frame_Shift_Del p.P99Rfs*4 0.10 TCGA-EW-A2FV-01 16 30676198 30676198 C - FBRS Frame_Shift_Del p.P508Lfs*93 0.10 TCGA-EW-A2FV-01 16 30678676 30678676 C - FBRS Frame_Shift_Del p.L638Cfs*48 0.10 TCGA-EW-A2FV-01 16 30682008 30682008 G - FBRS 3'UTR 0.10 TCGA-EW-A2FV-01 16 30721432 30721432 C - SRCAP Frame_Shift_Del p.P374Lfs*6 0.12 TCGA-EW-A2FV-01 16 30907979 30907979 G - CTF1 Frame_Shift_Del p.G6Efs*66 0.12 TCGA-EW-A2FV-01 16 30938694 30938694 G - FBXL19 Frame_Shift_Del p.G102Efs*8 0.09 TCGA-EW-A2FV-01 16 31098982 31098982 C - RP11-196G11.1 Frame_Shift_Del p.E115Rfs*15 0.11 TCGA-EW-A2FV-01 16 31122443 31122443 C - BCKDK Frame_Shift_Del p.R251Vfs*31 0.11 TCGA-EW-A2FV-01 16 31152840 31152840 C - PRSS36 Frame_Shift_Del p.I618Sfs*68 0.08 TCGA-EW-A2FV-01 16 31408921 31408921 C - ITGAD Frame_Shift_Del p.P83Lfs*4 0.14 TCGA-EW-A2FV-01 16 31439163 31439163 C - COX6A2 Frame_Shift_Del p.D76Tfs*12 0.27 TCGA-EW-A2FV-01 16 31487862 31487862 G - TGFB1I1 Frame_Shift_Del p.E318Sfs*95 0.11 TCGA-EW-A2FV-01 16 3433441 3433441 T - ZSCAN32 Frame_Shift_Del p.N290Tfs*183 0.08 TCGA-EW-A2FV-01 16 3779100 3779100 G - CREBBP Frame_Shift_Del p.P1983Qfs*16 0.08 TCGA-EW-A2FV-01 16 3831212 3831212 C - CREBBP Frame_Shift_Del p.A557Pfs*5 0.10 TCGA-EW-A2FV-01 16 3900935 3900935 A - CREBBP Frame_Shift_Del p.L54* 0.11 TCGA-EW-A2FV-01 16 4043441 4043441 T - ADCY9 Frame_Shift_Del p.N652Tfs*54 0.10 TCGA-EW-A2FV-01 16 4310110 4310110 T - TFAP4 Frame_Shift_Del p.N268Ifs*31 0.07 TCGA-EW-A2FV-01 16 4414916 4414916 G - CORO7 Frame_Shift_Del p.Q302Sfs*22 0.13 TCGA-EW-A2FV-01 16 460265 460265 C - DECR2 Frame_Shift_Del p.A122Lfs*12 0.12 TCGA-EW-A2FV-01 16 47698833 47698833 T - PHKB Frame_Shift_Del p.S793Lfs*4 0.08 TCGA-EW-A2FV-01 16 47733178 47733178 A - PHKB Frame_Shift_Del p.R1063Efs*7 0.10 TCGA-EW-A2FV-01 16 48138148 48138148 A - ABCC12 Frame_Shift_Del p.F935Lfs*8 0.08 TCGA-EW-A2FV-01 16 48576886 48576886 T - N4BP1 Frame_Shift_Del p.I874* 0.08 TCGA-EW-A2FV-01 16 4895089 4895089 A - GLYR1 Frame_Shift_Del p.F47Lfs*14 0.08 TCGA-EW-A2FV-01 16 4910854 4910854 C - UBN1 Frame_Shift_Del p.L289Cfs*23 0.09 TCGA-EW-A2FV-01 16 50383974 50383974 T - BRD7 Frame_Shift_Del p.K184Rfs*10 0.08 TCGA-EW-A2FV-01 16 5057361 5057361 C - SEC14L5 Frame_Shift_Del p.E484Kfs*11 0.13 TCGA-EW-A2FV-01 16 50664197 50664197 C - NKD1 Frame_Shift_Del p.D190Mfs*60 0.09 TCGA-EW-A2FV-01 16 50731147 50731147 G - NOD2 5'UTR 0.15 TCGA-EW-A2FV-01 16 50828275 50828275 T - CYLD Frame_Shift_Del p.F875Lfs*2 0.09 TCGA-EW-A2FV-01 16 5125391 5125391 C - ALG1 Frame_Shift_Del p.P133Qfs*59 0.10 TCGA-EW-A2FV-01 16 5129803 5129803 T - ALG1 Frame_Shift_Del p.I319Kfs*7 0.11 TCGA-EW-A2FV-01 16 52473415 52473415 G - TOX3 Frame_Shift_Del p.H485Tfs*56 0.09 TCGA-EW-A2FV-01 16 53326843 53326843 A - CHD9 Frame_Shift_Del p.N1798Tfs*17 0.10 TCGA-EW-A2FV-01 16 53679760 53679760 A - RPGRIP1L Frame_Shift_Del p.F820Lfs*29 0.10 TCGA-EW-A2FV-01 16 55518022 55518022 T - MMP2 Frame_Shift_Del p.S160Lfs*11 0.09 TCGA-EW-A2FV-01 16 56701905 56701905 T - MT1G Frame_Shift_Del p.M1? 0.08 TCGA-EW-A2FV-01 16 56872937 56872937 T - NUP93 Frame_Shift_Del p.F699Lfs*19 0.09 TCGA-EW-A2FV-01 16 57054630 57054630 C - NLRC5 Frame_Shift_Del p.V4Lfs*15 0.17 TCGA-EW-A2FV-01 16 57695726 57695726 C - GPR56 Frame_Shift_Del p.H602Tfs*9 0.11 TCGA-EW-A2FV-01 16 57734159 57734159 C - CCDC135 Frame_Shift_Del p.L162Cfs*59 0.10 TCGA-EW-A2FV-01 16 57794754 57794754 C - KIFC3 Frame_Shift_Del p.D706Tfs*83 0.09 TCGA-EW-A2FV-01 16 57931430 57931430 C - CNGB1 Frame_Shift_Del p.G1038Afs*25 0.12 TCGA-EW-A2FV-01 16 57946868 57946868 G - CNGB1 Frame_Shift_Del p.L779Wfs*26 0.08 TCGA-EW-A2FV-01 16 58540299 58540299 C - NDRG4 Frame_Shift_Del p.D181Tfs*9 0.09 TCGA-EW-A2FV-01 16 61761059 61761059 T - CDH8 Frame_Shift_Del p.N492Tfs*86 0.10 TCGA-EW-A2FV-01 16 66761611 66761611 T - DYNC1LI2 Frame_Shift_Del p.K414Sfs*24 0.10 TCGA-EW-A2FV-01 16 66885404 66885404 T - CA7 Frame_Shift_Del p.F133Lfs*27 0.08 TCGA-EW-A2FV-01 16 66885451 66885451 T - CA7 Frame_Shift_Del p.L150Wfs*10 0.10 TCGA-EW-A2FV-01 16 67070578 67070578 T - CBFB Frame_Shift_Del p.P70Rfs*19 0.08 TCGA-EW-A2FV-01 16 67228325 67228325 C - E2F4 Frame_Shift_Del p.P160Hfs*24 0.12 TCGA-EW-A2FV-01 16 67232033 67232033 G - E2F4 3'UTR 0.09 TCGA-EW-A2FV-01 16 67265377 67265377 G - FHOD1 Frame_Shift_Del p.L821Wfs*5 0.09 TCGA-EW-A2FV-01 16 67286506 67286506 G - SLC9A5 Frame_Shift_Del p.G84Afs*4 0.11 TCGA-EW-A2FV-01 16 67418824 67418824 A - LRRC36 Frame_Shift_Del p.G701Vfs*41 0.09 TCGA-EW-A2FV-01 16 67424920 67424920 C - TPPP3 Frame_Shift_Del p.G32Afs*19 0.09 TCGA-EW-A2FV-01 16 67576552 67576552 C - FAM65A Frame_Shift_Del p.T643Pfs*28 0.09 TCGA-EW-A2FV-01 16 67709135 67709135 C - GFOD2 Frame_Shift_Del p.E361Rfs*6 0.09 TCGA-EW-A2FV-01 16 67916462 67916462 A - EDC4 Frame_Shift_Del p.I1137Sfs*16 0.09 TCGA-EW-A2FV-01 16 67977850 67977850 C - LCAT Splice_Site p.X52_splice 0.12 TCGA-EW-A2FV-01 16 68336322 68336322 G - SLC7A6OS Frame_Shift_Del p.P254Qfs*21 0.08 TCGA-EW-A2FV-01 16 68405115 68405115 G - SMPD3 Frame_Shift_Del p.L324Cfs*7 0.08 TCGA-EW-A2FV-01 16 69279580 69279580 C - SNTB2 Frame_Shift_Del p.Q221Sfs*37 0.09 TCGA-EW-A2FV-01 16 69368932 69368932 G - COG8 Frame_Shift_Del p.P302Lfs*8 0.13 TCGA-EW-A2FV-01 16 69760403 69760403 C - NQO1 5'UTR 0.10 TCGA-EW-A2FV-01 16 69782930 69782930 C - NOB1 Frame_Shift_Del p.G206Vfs*4 0.09 TCGA-EW-A2FV-01 16 69786173 69786173 C - NOB1 Frame_Shift_Del p.V100Cfs*4 0.09 TCGA-EW-A2FV-01 16 69959368 69959368 C - WWP2 Frame_Shift_Del p.L407Sfs*17 0.09 TCGA-EW-A2FV-01 16 69965717 69965717 A - WWP2 Frame_Shift_Del p.K536Nfs*73 0.09 TCGA-EW-A2FV-01 16 69975427 69975427 G - WWP2 3'UTR 0.08 TCGA-EW-A2FV-01 16 70030039 70030039 C - PDXDC2P RNA 0.09 TCGA-EW-A2FV-01 16 70162943 70162943 G - PDPR Frame_Shift_Del p.A177Pfs*39 0.09 TCGA-EW-A2FV-01 16 70211245 70211245 G - CLEC18C Frame_Shift_Del p.G107Afs*69 0.09 TCGA-EW-A2FV-01 16 71065555 71065555 A - HYDIN Intron 0.09 TCGA-EW-A2FV-01 16 716577 716577 C - WDR90 Frame_Shift_Del p.P1622Qfs*27 0.12 TCGA-EW-A2FV-01 16 72020310 72020310 G - PKD1L3 RNA 0.11 TCGA-EW-A2FV-01 16 72058050 72058050 G - DHODH Frame_Shift_Del p.G381Afs*20 0.09 TCGA-EW-A2FV-01 16 72131653 72131653 C - DHX38 Frame_Shift_Del p.E198Rfs*60 0.08 TCGA-EW-A2FV-01 16 72164144 72164144 T - PMFBP1 Frame_Shift_Del p.M584* 0.09 TCGA-EW-A2FV-01 16 72829164 72829164 G - ZFHX3 Frame_Shift_Del p.Q2473Sfs*55 0.10 TCGA-EW-A2FV-01 16 72984573 72984573 T - ZFHX3 Frame_Shift_Del p.K1004Rfs*65 0.09 TCGA-EW-A2FV-01 16 74447020 74447020 G - CLEC18B Frame_Shift_Del p.Y198Ifs*37 0.10 TCGA-EW-A2FV-01 16 74499655 74499655 T - GLG1 Frame_Shift_Del p.V863Yfs*9 0.10 TCGA-EW-A2FV-01 16 74501688 74501688 T - GLG1 Frame_Shift_Del p.N832Tfs*17 0.08 TCGA-EW-A2FV-01 16 74662409 74662409 C - RFWD3 Frame_Shift_Del p.G637Afs*3 0.11 TCGA-EW-A2FV-01 16 74670324 74670324 T - RFWD3 Frame_Shift_Del p.N449Tfs*11 0.08 TCGA-EW-A2FV-01 16 74712834 74712834 C - MLKL Frame_Shift_Del p.S334Tfs*6 0.08 TCGA-EW-A2FV-01 16 74972110 74972110 G - WDR59 Frame_Shift_Del p.L197Wfs*20 0.09 TCGA-EW-A2FV-01 16 75270733 75270733 C - BCAR1 Intron 0.13 TCGA-EW-A2FV-01 16 75573861 75573861 C T TMEM231 3'UTR 0.14 TCGA-EW-A2FV-01 16 75665661 75665661 G - KARS Frame_Shift_Del p.T365Pfs*26 0.10 TCGA-EW-A2FV-01 16 777527 777527 C - HAGHL Frame_Shift_Del p.V8Cfs*40 0.12 TCGA-EW-A2FV-01 16 81295853 81295853 A - BCMO1 Frame_Shift_Del p.I147Sfs*20 0.08 TCGA-EW-A2FV-01 16 81391477 81391477 T - GAN Frame_Shift_Del p.W306Gfs*7 0.10 TCGA-EW-A2FV-01 16 830632 830632 G - MSLNL Frame_Shift_Del p.Y124Tfs*222 0.09 TCGA-EW-A2FV-01 16 84014670 84014670 G - NECAB2 Frame_Shift_Del p.V133Sfs*8 0.08 TCGA-EW-A2FV-01 16 84228015 84228015 G - ADAD2 Intron 0.16 TCGA-EW-A2FV-01 16 85132925 85132925 C - FAM92B Frame_Shift_Del p.A261Qfs*49 0.10 TCGA-EW-A2FV-01 16 88498378 88498378 T - ZNF469 Frame_Shift_Del p.L1474Cfs*53 0.09 TCGA-EW-A2FV-01 16 88744909 88744909 G - SNAI3 Frame_Shift_Del p.R276Afs*157 0.12 TCGA-EW-A2FV-01 16 88787127 88787127 C - PIEZO1 Frame_Shift_Del p.E1900Rfs*21 0.09 TCGA-EW-A2FV-01 16 88805163 88805163 G - PIEZO1 Intron 0.12 TCGA-EW-A2FV-01 16 88815817 88815817 G - PIEZO1 Frame_Shift_Del p.G46Afs*60 0.12 TCGA-EW-A2FV-01 16 89349895 89349895 T - ANKRD11 Frame_Shift_Del p.R1019Gfs*299 0.13 TCGA-EW-A2FV-01 16 89595887 89595887 C - SPG7 Frame_Shift_Del p.L255Cfs*6 0.11 TCGA-EW-A2FV-01 16 89703922 89703922 T - DPEP1 Frame_Shift_Del p.S273Pfs*52 0.09 TCGA-EW-A2FV-01 16 89799796 89799796 G - ZNF276 Frame_Shift_Del p.W419* 0.11 TCGA-EW-A2FV-01 16 89805312 89805312 T - FANCA Frame_Shift_Del p.K1413Rfs*20 0.08 TCGA-EW-A2FV-01 16 89999032 89999032 G - TUBB3 Frame_Shift_Del p.G38Afs*98 0.09 TCGA-EW-A2FV-01 16 9892132 9892132 A - GRIN2A Splice_Site p.X786_splice 0.09 TCGA-EW-A2FV-01 17 10231356 10231356 T - MYH13 Frame_Shift_Del p.I840Sfs*5 0.08 TCGA-EW-A2FV-01 17 10248572 10248572 C - MYH13 Frame_Shift_Del p.E511Sfs*93 0.08 TCGA-EW-A2FV-01 17 10297724 10297724 G - MYH8 Frame_Shift_Del p.L1670Sfs*64 0.09 TCGA-EW-A2FV-01 17 10301808 10301808 T - MYH8 Frame_Shift_Del p.K1377Nfs*31 0.10 TCGA-EW-A2FV-01 17 10304618 10304618 T - MYH8 Frame_Shift_Del p.T1028Pfs*3 0.09 TCGA-EW-A2FV-01 17 10354707 10354707 T - MYH4 Frame_Shift_Del p.E1268Kfs*6 0.11 TCGA-EW-A2FV-01 17 10356187 10356187 T - MYH4 Frame_Shift_Del p.K1058Nfs*6 0.08 TCGA-EW-A2FV-01 17 10362641 10362641 T - MYH4 Frame_Shift_Del p.K505Rfs*33 0.08 TCGA-EW-A2FV-01 17 10363301 10363301 C - MYH4 Frame_Shift_Del p.V462Sfs*76 0.10 TCGA-EW-A2FV-01 17 10400445 10400445 T - MYH1 Frame_Shift_Del p.I1533* 0.15 TCGA-EW-A2FV-01 17 10409335 10409335 T - MYH1 Frame_Shift_Del p.T684Lfs*14 0.09 TCGA-EW-A2FV-01 17 10428776 10428776 T - MYH2 Frame_Shift_Del p.N1510Tfs*26 0.08 TCGA-EW-A2FV-01 17 10429963 10429963 T - MYH2 Frame_Shift_Del p.K1380Nfs*31 0.10 TCGA-EW-A2FV-01 17 10429989 10429989 T - MYH2 Frame_Shift_Del p.T1372Pfs*39 0.10 TCGA-EW-A2FV-01 17 10536914 10536914 T - MYH3 Frame_Shift_Del p.A1548Qfs*19 0.10 TCGA-EW-A2FV-01 17 10543669 10543669 G - MYH3 Frame_Shift_Del p.Q803Rfs*21 0.08 TCGA-EW-A2FV-01 17 10584431 10584431 T - SCO1 3'UTR 0.09 TCGA-EW-A2FV-01 17 10728828 10728828 G - PIRT Frame_Shift_Del p.R46Gfs*34 0.13 TCGA-EW-A2FV-01 17 11840835 11840835 A - DNAH9 Frame_Shift_Del p.K4220Rfs*13 0.12 TCGA-EW-A2FV-01 17 12903484 12903484 G - ELAC2 Frame_Shift_Del p.P471Qfs*24 0.11 TCGA-EW-A2FV-01 17 1386271 1386271 C - MYO1C Frame_Shift_Del p.A144Qfs*125 0.10 TCGA-EW-A2FV-01 17 14139633 14139633 T - CDRT15 Frame_Shift_Del p.K126Rfs*104 0.10 TCGA-EW-A2FV-01 17 15341214 15341214 G - CDRT4 Frame_Shift_Del p.P111Lfs*3 0.09 TCGA-EW-A2FV-01 17 15554514 15554514 G - RP11-385D13.1 Frame_Shift_Del p.P137Hfs*26 0.15 TCGA-EW-A2FV-01 17 16332194 16332194 C - TRPV2 Frame_Shift_Del p.L496Cfs*13 0.09 TCGA-EW-A2FV-01 17 1640738 1640738 C - WDR81 Frame_Shift_Del p.H1863Ifs*104 0.15 TCGA-EW-A2FV-01 17 1640776 1640776 T - WDR81 Frame_Shift_Del p.F1875Lfs*92 0.16 TCGA-EW-A2FV-01 17 16722622 16722622 A - AC022596.6 RNA 0.09 TCGA-EW-A2FV-01 17 16725523 16725523 A - AC022596.6 RNA 0.10 TCGA-EW-A2FV-01 17 1675324 1675324 C - SERPINF1 Frame_Shift_Del p.D201Mfs*18 0.09 TCGA-EW-A2FV-01 17 17409118 17409118 T - PEMT Frame_Shift_Del p.H233Pfs*6 0.08 TCGA-EW-A2FV-01 17 18148433 18148433 G - FLII 3'UTR 0.11 TCGA-EW-A2FV-01 17 18220895 18220895 C - SMCR8 Frame_Shift_Del p.S599Pfs*14 0.17 TCGA-EW-A2FV-01 17 18498061 18498061 T A CCDC144B RNA 0.21 TCGA-EW-A2FV-01 17 18681844 18681844 C - FBXW10 Frame_Shift_Del p.S799Vfs*19 0.09 TCGA-EW-A2FV-01 17 1968845 1968845 C - SMG6 Frame_Shift_Del p.D1322Tfs*7 0.09 TCGA-EW-A2FV-01 17 21215563 21215563 C - MAP2K3 Frame_Shift_Del p.E297Sfs*10 0.15 TCGA-EW-A2FV-01 17 21730946 21730946 C - UBBP4 Frame_Shift_Del p.L84* 0.11 TCGA-EW-A2FV-01 17 2236273 2236273 A - TSR1 Frame_Shift_Del p.F429Lfs*20 0.09 TCGA-EW-A2FV-01 17 2239394 2239394 T - TSR1 Frame_Shift_Del p.E47Nfs*67 0.08 TCGA-EW-A2FV-01 17 2606646 2606646 C - CLUH Frame_Shift_Del p.L110Cfs*50 0.08 TCGA-EW-A2FV-01 17 26115887 26115887 T - NOS2 Frame_Shift_Del p.N89Tfs*6 0.10 TCGA-EW-A2FV-01 17 26800748 26800748 G - SLC13A2 Frame_Shift_Del p.A7Pfs*9 0.10 TCGA-EW-A2FV-01 17 26817439 26817439 T - SLC13A2 Frame_Shift_Del p.F116Sfs*58 0.10 TCGA-EW-A2FV-01 17 26965650 26965650 G - KIAA0100 Frame_Shift_Del p.Q414Kfs*52 0.10 TCGA-EW-A2FV-01 17 27031372 27031372 A - PROCA1 Frame_Shift_Del p.F103Lfs*28 0.09 TCGA-EW-A2FV-01 17 27421863 27421863 T - MYO18A Frame_Shift_Del p.D1506Tfs*14 0.08 TCGA-EW-A2FV-01 17 27620856 27620856 T - NUFIP2 Frame_Shift_Del p.K74Nfs*24 0.09 TCGA-EW-A2FV-01 17 27620880 27620880 G - NUFIP2 Frame_Shift_Del p.K67Rfs*7 0.09 TCGA-EW-A2FV-01 17 27939784 27939784 A - ANKRD13B Frame_Shift_Del p.Q509Hfs*24 0.14 TCGA-EW-A2FV-01 17 27957892 27957892 T - SSH2 Frame_Shift_Del p.K1413Nfs*21 0.08 TCGA-EW-A2FV-01 17 27959592 27959592 C - SSH2 Frame_Shift_Del p.E847Nfs*20 0.10 TCGA-EW-A2FV-01 17 28256983 28256983 G - SSH2 Frame_Shift_Del p.S13Afs*30 0.11 TCGA-EW-A2FV-01 17 28323358 28323358 A - EFCAB5 Frame_Shift_Del p.N319Ifs*23 0.11 TCGA-EW-A2FV-01 17 29632268 29632268 G - EVI2B Frame_Shift_Del p.V121Cfs*41 0.10 TCGA-EW-A2FV-01 17 30551686 30551686 T - RHOT1 Frame_Shift_Del p.F671Lfs*18 0.10 TCGA-EW-A2FV-01 17 30677184 30677184 T - ZNF207 5'UTR 0.09 TCGA-EW-A2FV-01 17 30696659 30696659 C - ZNF207 Frame_Shift_Del p.P456Lfs*28 0.10 TCGA-EW-A2FV-01 17 31263398 31263398 G - TMEM98 Frame_Shift_Del p.A117Pfs*3 0.10 TCGA-EW-A2FV-01 17 3195268 3195268 A - OR3A1 Frame_Shift_Del p.F203Lfs*6 0.08 TCGA-EW-A2FV-01 17 33498378 33498378 C - UNC45B Frame_Shift_Del p.L579Wfs*2 0.08 TCGA-EW-A2FV-01 17 35299651 35299651 C - LHX1 Frame_Shift_Del p.F278Sfs*123 0.12 TCGA-EW-A2FV-01 17 35745710 35745710 T - C17orf78 Frame_Shift_Del p.F206Lfs*10 0.09 TCGA-EW-A2FV-01 17 3643144 3643144 T - ITGAE Frame_Shift_Del p.K826Sfs*27 0.09 TCGA-EW-A2FV-01 17 3665260 3665260 G - ITGAE Frame_Shift_Del p.K89Rfs*7 0.19 TCGA-EW-A2FV-01 17 36719071 36719071 C - SRCIN1 Frame_Shift_Del p.D276Tfs*99 0.11 TCGA-EW-A2FV-01 17 36881841 36881841 A - MLLT6 Frame_Shift_Del p.G1093Afs*20 0.12 TCGA-EW-A2FV-01 17 36918714 36918714 G - PSMB3 Frame_Shift_Del p.D176Tfs*25 0.10 TCGA-EW-A2FV-01 17 37224138 37224138 G - PLXDC1 Frame_Shift_Del p.S487Rfs*22 0.10 TCGA-EW-A2FV-01 17 37453434 37453434 T - FBXL20 Frame_Shift_Del p.N115Tfs*8 0.09 TCGA-EW-A2FV-01 17 37596650 37596650 C - MED1 Frame_Shift_Del p.E130Rfs*4 0.10 TCGA-EW-A2FV-01 17 37868614 37868614 G - ERBB2 Frame_Shift_Del p.A355Qfs*76 0.10 TCGA-EW-A2FV-01 17 37872120 37872120 C - ERBB2 Frame_Shift_Del p.W482Gfs*74 0.09 TCGA-EW-A2FV-01 17 37899306 37899306 G - GRB7 Frame_Shift_Del 0.12 TCGA-EW-A2FV-01 17 37922691 37922691 T - IKZF3 Frame_Shift_Del p.E295Rfs*9 0.08 TCGA-EW-A2FV-01 17 38290098 38290098 C - MSL1 Frame_Shift_Del p.F306Sfs*5 0.12 TCGA-EW-A2FV-01 17 38548955 38548955 A - TOP2A Frame_Shift_Del p.F1282Lfs*88 0.08 TCGA-EW-A2FV-01 17 38610275 38610275 C - IGFBP4 Frame_Shift_Del p.N203Tfs*33 0.09 TCGA-EW-A2FV-01 17 38643488 38643488 G - TNS4 Frame_Shift_Del p.P363Hfs*14 0.09 TCGA-EW-A2FV-01 17 38855765 38855765 A - KRT24 Frame_Shift_Del p.L431Cfs*39 0.08 TCGA-EW-A2FV-01 17 38974723 38974723 T - KRT10 3'UTR 0.10 TCGA-EW-A2FV-01 17 38990977 38990977 C - TMEM99 Frame_Shift_Del p.E72Sfs*20 0.10 TCGA-EW-A2FV-01 17 39190637 39190637 G - KRTAP1-3 Frame_Shift_Del p.P146Hfs*106 0.10 TCGA-EW-A2FV-01 17 3919667 3919667 C - ZZEF1 Frame_Shift_Del p.V2699Cfs*3 0.10 TCGA-EW-A2FV-01 17 39323907 39323907 A - KRTAP4-3 Frame_Shift_Del p.F173Sfs*25 0.13 TCGA-EW-A2FV-01 17 39383290 39394642 17:39383290-39394642 - KRTAP9-3 large deletion 0.11 TCGA-EW-A2FV-01 17 39645976 39645976 C - KRT36 Frame_Shift_Del p.Y48Tfs*53 0.10 TCGA-EW-A2FV-01 17 39661552 39661552 C - KRT13 Frame_Shift_Del p.G84Vfs*51 0.10 TCGA-EW-A2FV-01 17 39723663 39723663 G - KRT9 Frame_Shift_Del p.R579Gfs*? 0.09 TCGA-EW-A2FV-01 17 39738651 39738651 G - KRT14 3'UTR 0.09 TCGA-EW-A2FV-01 17 39742760 39742760 C - KRT14 Frame_Shift_Del p.L110Ffs*8 0.09 TCGA-EW-A2FV-01 17 39742839 39742839 C - KRT14 Frame_Shift_Del p.G83Afs*35 0.11 TCGA-EW-A2FV-01 17 39767207 39767207 C - KRT16 Frame_Shift_Del p.A320Pfs*14 0.10 TCGA-EW-A2FV-01 17 40048664 40048664 T - ACLY Frame_Shift_Del p.E547Rfs*3 0.09 TCGA-EW-A2FV-01 17 40054947 40054947 G - ACLY Frame_Shift_Del p.N426Tfs*124 0.08 TCGA-EW-A2FV-01 17 40123969 40123969 C - CNP Frame_Shift_Del p.P247Qfs*28 0.20 TCGA-EW-A2FV-01 17 40272343 40272343 T - KAT2A Frame_Shift_Del p.N170Tfs*43 0.09 TCGA-EW-A2FV-01 17 40354405 40354405 G - STAT5B Frame_Shift_Del p.S731Pfs*35 0.09 TCGA-EW-A2FV-01 17 40574717 40574717 C - PTRF Frame_Shift_Del p.Q134Rfs*21 0.14 TCGA-EW-A2FV-01 17 40738892 40738892 G - FAM134C Frame_Shift_Del p.P132Lfs*13 0.10 TCGA-EW-A2FV-01 17 40834831 40834831 G - CCR10 5'Flank 0.15 TCGA-EW-A2FV-01 17 40847708 40847708 C - CNTNAP1 Frame_Shift_Del p.Y1057Tfs*77 0.15 TCGA-EW-A2FV-01 17 40872353 40872353 T - EZH1 Frame_Shift_Del p.K201Sfs*11 0.09 TCGA-EW-A2FV-01 17 41102697 41102697 A - AARSD1 Frame_Shift_Del p.Q385Rfs*7 0.11 TCGA-EW-A2FV-01 17 41352466 41352466 T - NBR1 Frame_Shift_Del p.E771Rfs*25 0.16 TCGA-EW-A2FV-01 17 41924596 41924596 G - CD300LG Frame_Shift_Del p.V5Sfs*39 0.12 TCGA-EW-A2FV-01 17 42461000 42461000 C - ITGA2B Frame_Shift_Del p.R358Vfs*21 0.19 TCGA-EW-A2FV-01 17 42477396 42477396 T - GPATCH8 Frame_Shift_Del p.K683Nfs*426 0.10 TCGA-EW-A2FV-01 17 43006268 43006268 T - KIF18B Frame_Shift_Del p.I548Lfs*8 0.10 TCGA-EW-A2FV-01 17 43181139 43181139 C - NMT1 Frame_Shift_Del p.H410Ifs*23 0.08 TCGA-EW-A2FV-01 17 43333004 43333004 C - SPATA32 Frame_Shift_Del p.G182Afs*57 0.11 TCGA-EW-A2FV-01 17 43347896 43347896 G - MAP3K14-AS1 3'Flank 0.10 TCGA-EW-A2FV-01 17 4448379 4448379 T - MYBBP1A Frame_Shift_Del p.D751Afs*10 0.13 TCGA-EW-A2FV-01 17 4448405 4448405 C - MYBBP1A Frame_Shift_Del p.S743Afs*18 0.09 TCGA-EW-A2FV-01 17 4452707 4452707 T - MYBBP1A Frame_Shift_Del p.K450Nfs*8 0.09 TCGA-EW-A2FV-01 17 44788387 44788387 G - NSF Frame_Shift_Del p.G511Vfs*8 0.12 TCGA-EW-A2FV-01 17 45221307 45221307 G - CDC27 Frame_Shift_Del p.P377Qfs*26 0.14 TCGA-EW-A2FV-01 17 45234681 45234681 T - CDC27 Frame_Shift_Del p.N182Tfs*31 0.09 TCGA-EW-A2FV-01 17 45755493 45755493 A - KPNB1 Frame_Shift_Del p.K730Nfs*3 0.10 TCGA-EW-A2FV-01 17 46135739 46135739 C - NFE2L1 Frame_Shift_Del p.N354Tfs*60 0.08 TCGA-EW-A2FV-01 17 4643890 4643890 C - ZMYND15 Frame_Shift_Del p.L17Ffs*16 0.09 TCGA-EW-A2FV-01 17 46621925 46621925 C - HOXB2 Frame_Shift_Del p.A117Pfs*80 0.15 TCGA-EW-A2FV-01 17 46627820 46627820 G - HOXB3 Frame_Shift_Del p.P391Lfs*38 0.09 TCGA-EW-A2FV-01 17 46670562 46670562 G - HOXB5 Frame_Shift_Del p.M162Wfs*19 0.11 TCGA-EW-A2FV-01 17 47007928 47007928 G - SNF8 Frame_Shift_Del p.P229Qfs*97 0.09 TCGA-EW-A2FV-01 17 47375902 47375902 G - ZNF652 Frame_Shift_Del p.P565Lfs*18 0.08 TCGA-EW-A2FV-01 17 47589286 47589286 C - NGFR Frame_Shift_Del p.N286Tfs*5 0.08 TCGA-EW-A2FV-01 17 48186735 48186735 T - PDK2 Frame_Shift_Del p.F352Lfs*105 0.10 TCGA-EW-A2FV-01 17 48202282 48202282 A - SAMD14 Frame_Shift_Del p.F14Lfs*58 0.10 TCGA-EW-A2FV-01 17 4844193 4844193 C - RNF167 5'UTR 0.12 TCGA-EW-A2FV-01 17 48545956 48545956 G - CHAD Frame_Shift_Del p.M74Cfs*49 0.08 TCGA-EW-A2FV-01 17 48546034 48546034 G - CHAD Frame_Shift_Del p.K48Rfs*75 0.10 TCGA-EW-A2FV-01 17 48616250 48616250 C - EPN3 Frame_Shift_Del p.P231Qfs*17 0.10 TCGA-EW-A2FV-01 17 48631616 48631616 G - SPATA20 Frame_Shift_Del p.D655Mfs*35 0.09 TCGA-EW-A2FV-01 17 4873320 4873320 A - CAMTA2 Frame_Shift_Del p.L1046Sfs*16 0.09 TCGA-EW-A2FV-01 17 48735838 48735838 T - ABCC3 Frame_Shift_Del p.F220Sfs*24 0.09 TCGA-EW-A2FV-01 17 48784943 48784943 C - ANKRD40 Frame_Shift_Del p.E25Rfs*12 0.10 TCGA-EW-A2FV-01 17 4906078 4906078 T - KIF1C Frame_Shift_Del p.F221Lfs*45 0.11 TCGA-EW-A2FV-01 17 49247366 49247366 A - NME1-NME2 Frame_Shift_Del p.K215Sfs*24 0.09 TCGA-EW-A2FV-01 17 4925747 4925747 G - KIF1C Frame_Shift_Del p.G791Afs*17 0.12 TCGA-EW-A2FV-01 17 505132 505132 T - VPS53 Frame_Shift_Del p.K374Sfs*31 0.12 TCGA-EW-A2FV-01 17 55072968 55072968 G - SCPEP1 Frame_Shift_Del p.A256Qfs*3 0.10 TCGA-EW-A2FV-01 17 55197777 55197777 G A AKAP1 3'UTR 0.10 TCGA-EW-A2FV-01 17 56084341 56084341 C - SRSF1 Frame_Shift_Del p.G53Dfs*85 0.11 TCGA-EW-A2FV-01 17 56603603 56603603 A - SEPT4 Frame_Shift_Del p.F158Lfs*53 0.08 TCGA-EW-A2FV-01 17 57153025 57153025 G - TRIM37 Frame_Shift_Del p.Q223Rfs*15 0.08 TCGA-EW-A2FV-01 17 57183840 57183840 G - TRIM37 5'UTR 0.11 TCGA-EW-A2FV-01 17 61571791 61571791 G - ACE Frame_Shift_Del p.A1115Pfs*57 0.08 TCGA-EW-A2FV-01 17 61613117 61613117 G - KCNH6 Frame_Shift_Del p.A398Rfs*14 0.10 TCGA-EW-A2FV-01 17 61615562 61615562 C - KCNH6 Frame_Shift_Del p.Q547Sfs*19 0.10 TCGA-EW-A2FV-01 17 61657219 61657219 G - DCAF7 Intron 0.08 TCGA-EW-A2FV-01 17 62018116 62018116 C - SCN4A 3'UTR 0.08 TCGA-EW-A2FV-01 17 62045565 62045565 G - SCN4A Frame_Shift_Del p.P285Rfs*119 0.10 TCGA-EW-A2FV-01 17 62075756 62075756 G - C17orf72 Frame_Shift_Del p.R11Pfs*33 0.11 TCGA-EW-A2FV-01 17 62135322 62135322 T - ERN1 Frame_Shift_Del p.N413Tfs*37 0.09 TCGA-EW-A2FV-01 17 62850680 62850680 T - LRRC37A3 3'UTR 0.09 TCGA-EW-A2FV-01 17 63221513 63221513 C - RGS9 Frame_Shift_Del p.K602Sfs*23 0.09 TCGA-EW-A2FV-01 17 648087 648087 C - GEMIN4 3'UTR 0.16 TCGA-EW-A2FV-01 17 6483059 6483059 G - KIAA0753 3'UTR 0.11 TCGA-EW-A2FV-01 17 65714061 65714061 A - NOL11 5'UTR p.M1? 0.09 TCGA-EW-A2FV-01 17 691208 691208 T - RNMTL1 Frame_Shift_Del p.F189Lfs*9 0.08 TCGA-EW-A2FV-01 17 6982136 6982136 G - CLEC10A 5'UTR 0.08 TCGA-EW-A2FV-01 17 7094613 7094613 C - DLG4 Frame_Shift_Del p.E724Sfs*24 0.10 TCGA-EW-A2FV-01 17 7106624 7106624 C - DLG4 Frame_Shift_Del p.G220Afs*2 0.13 TCGA-EW-A2FV-01 17 7139720 7139720 G - PHF23 Frame_Shift_Del p.H176Ifs*48 0.12 TCGA-EW-A2FV-01 17 7219498 7219498 C - NEURL4 Frame_Shift_Del p.V1545Sfs*21 0.10 TCGA-EW-A2FV-01 17 7228737 7228737 C - NEURL4 Frame_Shift_Del p.M475Wfs*3 0.09 TCGA-EW-A2FV-01 17 7230775 7230775 C - NEURL4 Frame_Shift_Del p.T238Pfs*38 0.10 TCGA-EW-A2FV-01 17 72832398 72832398 T - TMEM104 Frame_Shift_Del p.F356Sfs*19 0.11 TCGA-EW-A2FV-01 17 73124799 73124799 G - ARMC7 Frame_Shift_Del p.A89Pfs*37 0.14 TCGA-EW-A2FV-01 17 73625065 73625065 C - RECQL5 Frame_Shift_Del p.G813Dfs*68 0.14 TCGA-EW-A2FV-01 17 73805938 73805938 A - UNK Frame_Shift_Del p.N68Tfs*112 0.13 TCGA-EW-A2FV-01 17 73814752 73814752 C - UNK Frame_Shift_Del p.L469* 0.08 TCGA-EW-A2FV-01 17 7399585 7399585 T - POLR2A Frame_Shift_Del p.H96Tfs*6 0.11 TCGA-EW-A2FV-01 17 73999351 73999351 C - CDK3 Frame_Shift_Del p.S223Afs*118 0.13 TCGA-EW-A2FV-01 17 7416628 7416628 C - POLR2A Frame_Shift_Del p.P1683Lfs*298 0.09 TCGA-EW-A2FV-01 17 74340773 74340773 A - PRPSAP1 Frame_Shift_Del p.F90Sfs*10 0.10 TCGA-EW-A2FV-01 17 74387234 74387234 T - UBE2O Frame_Shift_Del p.P1224Qfs*9 0.08 TCGA-EW-A2FV-01 17 74574839 74574839 T - ST6GALNAC2 Frame_Shift_Del p.K62Rfs*44 0.09 TCGA-EW-A2FV-01 17 74625425 74625425 T - ST6GALNAC1 Frame_Shift_Del p.N167Mfs*8 0.09 TCGA-EW-A2FV-01 17 74774351 74774351 T - MFSD11 Frame_Shift_Del p.F424Lfs*17 0.08 TCGA-EW-A2FV-01 17 7481212 7481212 T - EIF4A1 Frame_Shift_Del p.L326* 0.15 TCGA-EW-A2FV-01 17 7483284 7483284 C - CD68 Frame_Shift_Del p.T70Pfs*127 0.09 TCGA-EW-A2FV-01 17 7483316 7483316 A - CD68 Frame_Shift_Del p.N80Tfs*117 0.09 TCGA-EW-A2FV-01 17 7483357 7483357 A - CD68 Frame_Shift_Del p.T94Qfs*103 0.14 TCGA-EW-A2FV-01 17 7484375 7484375 T - CD68 Frame_Shift_Del p.F308Lfs*21 0.10 TCGA-EW-A2FV-01 17 74869014 74869014 G - MGAT5B Frame_Shift_Del p.D63Tfs*10 0.09 TCGA-EW-A2FV-01 17 74942493 74942493 G - MGAT5B Frame_Shift_Del p.M639Cfs*80 0.14 TCGA-EW-A2FV-01 17 7496034 7496034 G - FXR2 Frame_Shift_Del p.N570Tfs*2 0.10 TCGA-EW-A2FV-01 17 75877949 75877949 G - FLJ45079 3'UTR 0.12 TCGA-EW-A2FV-01 17 75878251 75878251 A - FLJ45079 Frame_Shift_Del p.F74Lfs*53 0.08 TCGA-EW-A2FV-01 17 75878420 75878420 A - FLJ45079 Frame_Shift_Del p.L18Cfs*12 0.09 TCGA-EW-A2FV-01 17 76109642 76109642 C - TMC6 Frame_Shift_Del p.E781Rfs*76 0.08 TCGA-EW-A2FV-01 17 76121826 76121826 G - TMC6 Frame_Shift_Del p.T138Rfs*13 0.11 TCGA-EW-A2FV-01 17 76130014 76130014 G - TMC8 Frame_Shift_Del p.D251Tfs*33 0.09 TCGA-EW-A2FV-01 17 76411108 76411108 G - PGS1 Frame_Shift_Del 0.09 TCGA-EW-A2FV-01 17 76456289 76456289 T - DNAH17 Frame_Shift_Del p.E3116Dfs*14 0.10 TCGA-EW-A2FV-01 17 76480989 76480989 G - DNAH17 Frame_Shift_Del p.P2523Rfs*20 0.09 TCGA-EW-A2FV-01 17 76525709 76525709 C - DNAH17 Frame_Shift_Del p.D1118Tfs*8 0.08 TCGA-EW-A2FV-01 17 76570932 76570932 G - DNAH17 Frame_Shift_Del p.Q70Sfs*40 0.08 TCGA-EW-A2FV-01 17 77040143 77040143 G - C1QTNF1 Frame_Shift_Del p.E33Nfs*65 0.10 TCGA-EW-A2FV-01 17 77100192 77100192 A - RBFOX3 Frame_Shift_Del p.L126* 0.11 TCGA-EW-A2FV-01 17 77707345 77707345 A - ENPP7 Frame_Shift_Del p.Y98Sfs*8 0.08 TCGA-EW-A2FV-01 17 77924245 77924245 G - TBC1D16 Frame_Shift_Del p.L408Wfs*65 0.16 TCGA-EW-A2FV-01 17 77924366 77924366 G - TBC1D16 Frame_Shift_Del p.D368Ifs*38 0.14 TCGA-EW-A2FV-01 17 78024002 78024002 G - CCDC40 Frame_Shift_Del p.R360Sfs*58 0.13 TCGA-EW-A2FV-01 17 78081599 78081599 C - GAA Frame_Shift_Del p.G288Vfs*26 0.12 TCGA-EW-A2FV-01 17 78185839 78185839 C - SGSH Intron 0.12 TCGA-EW-A2FV-01 17 78195499 78195499 G - SLC26A11 Frame_Shift_Del p.W47Cfs*2 0.12 TCGA-EW-A2FV-01 17 78293132 78293132 G - RNF213 Intron 0.12 TCGA-EW-A2FV-01 17 7847945 7847945 C - CNTROB Frame_Shift_Del p.N576Tfs*34 0.12 TCGA-EW-A2FV-01 17 79082721 79082721 G - BAIAP2 Intron 0.15 TCGA-EW-A2FV-01 17 79082760 79082760 T - BAIAP2 Intron 0.09 TCGA-EW-A2FV-01 17 79154972 79154972 C - AATK-AS1 RNA 0.13 TCGA-EW-A2FV-01 17 79409027 79409027 T - RP11-1055B8.7 Frame_Shift_Del p.F218Sfs*82 0.17 TCGA-EW-A2FV-01 17 7942562 7942562 G - ALOX15B Frame_Shift_Del p.G31Efs*25 0.16 TCGA-EW-A2FV-01 17 79478964 79478964 G - ACTG1 Frame_Shift_Del p.L110* 0.17 TCGA-EW-A2FV-01 17 79769765 79769765 C - GCGR Frame_Shift_Del p.M276Cfs*41 0.08 TCGA-EW-A2FV-01 17 79864356 79864356 C - PCYT2 Frame_Shift_Del p.G266Afs*19 0.09 TCGA-EW-A2FV-01 17 79871684 79871684 C - SIRT7 Frame_Shift_Del p.A324Pfs*59 0.11 TCGA-EW-A2FV-01 17 80059679 80059679 G - FASN 5'Flank 0.09 TCGA-EW-A2FV-01 17 80151638 80151638 T - CCDC57 Frame_Shift_Del p.K282Rfs*21 0.10 TCGA-EW-A2FV-01 17 8018348 8018348 G - ALOXE3 Frame_Shift_Del p.C287Afs*3 0.08 TCGA-EW-A2FV-01 17 80575207 80575207 A - WDR45B Frame_Shift_Del p.F257Lfs*81 0.09 TCGA-EW-A2FV-01 17 8064933 8064933 T - VAMP2 Frame_Shift_Del p.N92Tfs*4 0.10 TCGA-EW-A2FV-01 17 80772792 80772792 C - TBCD Frame_Shift_Del p.P434Rfs*10 0.08 TCGA-EW-A2FV-01 17 80918933 80918933 T - B3GNTL1 Frame_Shift_Del p.E242Gfs*39 0.13 TCGA-EW-A2FV-01 17 8141362 8141362 G - CTC1 Frame_Shift_Del p.L212Cfs*19 0.13 TCGA-EW-A2FV-01 17 8141522 8141522 A - CTC1 Frame_Shift_Del p.L159Cfs*33 0.10 TCGA-EW-A2FV-01 17 8169264 8169264 A - PFAS Frame_Shift_Del p.E877Dfs*23 0.09 TCGA-EW-A2FV-01 17 8171925 8171925 T - PFAS Frame_Shift_Del p.F1153Sfs*65 0.11 TCGA-EW-A2FV-01 17 8222163 8222163 C - ARHGEF15 Frame_Shift_Del p.R658Afs*137 0.10 TCGA-EW-A2FV-01 17 8644975 8644975 T - CCDC42 Frame_Shift_Del p.K103Nfs*6 0.09 TCGA-EW-A2FV-01 17 915163 915163 C - ABR Frame_Shift_Del p.G675Vfs*33 0.08 TCGA-EW-A2FV-01 17 9541986 9541986 C - WDR16 Frame_Shift_Del p.P512Lfs*25 0.10 TCGA-EW-A2FV-01 17 97019 97019 G - RPH3AL Frame_Shift_Del p.L166* 0.16 TCGA-EW-A2FV-01 17 9729464 9729464 C - GLP2R Frame_Shift_Del p.P29Lfs*56 0.13 TCGA-EW-A2FV-01 17 986844 986844 T - ABR Frame_Shift_Del p.A186Rfs*32 0.09 TCGA-EW-A2FV-01 18 10550125 10550125 A - NAPG Frame_Shift_Del p.K283Nfs*46 0.09 TCGA-EW-A2FV-01 18 10672803 10672803 C - PIEZO2 Frame_Shift_Del p.W2630Cfs*6 0.08 TCGA-EW-A2FV-01 18 12955517 12955517 T - SEH1L Frame_Shift_Del p.L74Wfs*16 0.09 TCGA-EW-A2FV-01 18 13612766 13612766 A - LDLRAD4 Intron 0.09 TCGA-EW-A2FV-01 18 14537931 14537931 C - POTEC Frame_Shift_Del p.E227Nfs*27 0.16 TCGA-EW-A2FV-01 18 19116039 19116039 T - ESCO1 Frame_Shift_Del p.V718* 0.10 TCGA-EW-A2FV-01 18 192871 192871 A - USP14 Frame_Shift_Del p.M146Wfs*62 0.09 TCGA-EW-A2FV-01 18 21140244 21140244 C - NPC1 Frame_Shift_Del p.A278Rfs*32 0.08 TCGA-EW-A2FV-01 18 21330917 21330917 A - LAMA3 Frame_Shift_Del p.N242Ifs*8 0.12 TCGA-EW-A2FV-01 18 21396372 21396372 G - LAMA3 Frame_Shift_Del p.A691Hfs*39 0.12 TCGA-EW-A2FV-01 18 23615034 23615034 C - SS18 Frame_Shift_Del p.G344Dfs*83 0.14 TCGA-EW-A2FV-01 18 24127273 24127273 G - KCTD1 Intron 0.11 TCGA-EW-A2FV-01 18 28711623 28711623 C - DSC1 Frame_Shift_Del p.Q808Rfs*55 0.08 TCGA-EW-A2FV-01 18 28721981 28721981 C T DSC1 Missense_Mutation p.G414E 0.12 deleterious(0) probably_damaging(0.909) TCGA-EW-A2FV-01 18 2920366 2920366 A - LPIN2 Frame_Shift_Del p.C874Afs*125 0.14 TCGA-EW-A2FV-01 18 29598983 29598983 G - RNF125 Frame_Shift_Del p.G53Afs*13 0.11 TCGA-EW-A2FV-01 18 29704745 29704745 T - RNF138 Frame_Shift_Del p.F167Lfs*18 0.09 TCGA-EW-A2FV-01 18 3151847 3151847 G - MYOM1 Frame_Shift_Del p.P563Lfs*2 0.11 TCGA-EW-A2FV-01 18 31709889 31709889 C - NOL4 Frame_Shift_Del p.P121Qfs*31 0.08 TCGA-EW-A2FV-01 18 33691086 33691086 T - SLC39A6 Frame_Shift_Del p.N684Mfs*70 0.10 TCGA-EW-A2FV-01 18 33703464 33703464 A - SLC39A6 Frame_Shift_Del p.P379Hfs*20 0.09 TCGA-EW-A2FV-01 18 33785116 33785116 C - MOCOS Frame_Shift_Del p.N367Mfs*69 0.13 TCGA-EW-A2FV-01 18 34205709 34205709 A - FHOD3 Frame_Shift_Del p.K399Nfs*75 0.11 TCGA-EW-A2FV-01 18 34359438 34359438 C - FHOD3 Frame_Shift_Del p.P1423Qfs*28 0.11 TCGA-EW-A2FV-01 18 34839184 34839184 C - CELF4 Frame_Shift_Del p.E431Dfs*7 0.15 TCGA-EW-A2FV-01 18 43248387 43248387 A - SLC14A2 Frame_Shift_Del p.G662Vfs*45 0.09 TCGA-EW-A2FV-01 18 43316469 43316469 C - SLC14A1 Frame_Shift_Del p.V231Sfs*32 0.10 TCGA-EW-A2FV-01 18 44063705 44063705 C - LOXHD1 Frame_Shift_Del p.T952Pfs*98 0.09 TCGA-EW-A2FV-01 18 44336410 44336410 A - ST8SIA5 Frame_Shift_Del p.I21Tfs*9 0.09 TCGA-EW-A2FV-01 18 46448275 46448275 G - SMAD7 Frame_Shift_Del p.Q250Nfs*74 0.12 TCGA-EW-A2FV-01 18 47015730 47015730 T - RPL17-C18orf32 Frame_Shift_Del p.K169Sfs*2 0.09 TCGA-EW-A2FV-01 18 47769335 47769335 T - CCDC11 Frame_Shift_Del p.K383Rfs*40 0.08 TCGA-EW-A2FV-01 18 52555342 52555342 A - RAB27B Frame_Shift_Del p.K154Nfs*21 0.10 TCGA-EW-A2FV-01 18 5395643 5395643 T - EPB41L3 Frame_Shift_Del p.T1013Pfs*14 0.10 TCGA-EW-A2FV-01 18 55328484 55328484 C - ATP8B1 Frame_Shift_Del p.V877Wfs*4 0.09 TCGA-EW-A2FV-01 18 56247609 56247609 T - ALPK2 Frame_Shift_Del p.E134Kfs*114 0.09 TCGA-EW-A2FV-01 18 5956223 5956223 C - L3MBTL4 Frame_Shift_Del p.G623Dfs*6 0.13 TCGA-EW-A2FV-01 18 59925896 59925896 A - KIAA1468 Frame_Shift_Del p.K731Nfs*25 0.09 TCGA-EW-A2FV-01 18 61022495 61022495 T - KDSR Frame_Shift_Del p.N120Ifs*22 0.10 TCGA-EW-A2FV-01 18 61747614 61747614 T - LINC00305 RNA 0.09 TCGA-EW-A2FV-01 18 67802460 67802460 A - RTTN Frame_Shift_Del p.C949Vfs*44 0.10 TCGA-EW-A2FV-01 18 6950921 6950921 A - LAMA1 Frame_Shift_Del p.Y2753Tfs*59 0.09 TCGA-EW-A2FV-01 18 6997787 6997787 G - LAMA1 Frame_Shift_Del p.P1587Hfs*20 0.09 TCGA-EW-A2FV-01 18 7023200 7023200 C - LAMA1 Frame_Shift_Del p.F889Sfs*6 0.09 TCGA-EW-A2FV-01 18 7080000 7080000 C - LAMA1 Frame_Shift_Del p.V107Sfs*7 0.08 TCGA-EW-A2FV-01 18 72775252 72775252 C - ZNF407 Frame_Shift_Del p.P1860Lfs*62 0.12 TCGA-EW-A2FV-01 18 7955157 7955157 G - PTPRM Frame_Shift_Del p.V293* 0.14 TCGA-EW-A2FV-01 18 9124934 9124934 G - NDUFV2 Frame_Shift_Del p.A179Pfs*3 0.14 TCGA-EW-A2FV-01 18 9792167 9792167 A - RAB31 Frame_Shift_Del p.T47Lfs*51 0.12 TCGA-EW-A2FV-01 19 10127755 10127755 G - RDH8 Frame_Shift_Del p.K64Rfs*45 0.13 TCGA-EW-A2FV-01 19 10251482 10251482 C - DNMT1 Frame_Shift_Del p.L1167Cfs*29 0.16 TCGA-EW-A2FV-01 19 10394282 10394282 G - ICAM1 Frame_Shift_Del p.E154Rfs*4 0.15 TCGA-EW-A2FV-01 19 10506675 10506675 C - CDC37 Frame_Shift_Del p.E103Rfs*27 0.09 TCGA-EW-A2FV-01 19 1056934 1056934 T - ABCA7 Frame_Shift_Del p.S1539Pfs*116 0.10 TCGA-EW-A2FV-01 19 10685604 10685604 G - AP1M2 Frame_Shift_Del p.Y384Tfs*12 0.10 TCGA-EW-A2FV-01 19 10742832 10742832 G - SLC44A2 Frame_Shift_Del 0.08 TCGA-EW-A2FV-01 19 10818047 10818047 C - QTRT1 Frame_Shift_Del p.M175Cfs*43 0.11 TCGA-EW-A2FV-01 19 10893703 10893703 G - DNM2 Frame_Shift_Del p.A253Qfs*29 0.14 TCGA-EW-A2FV-01 19 11034052 11034052 T - YIPF2 Frame_Shift_Del p.N289Tfs*62 0.08 TCGA-EW-A2FV-01 19 11216197 11216197 A - LDLR Frame_Shift_Del p.S206Vfs*59 0.11 TCGA-EW-A2FV-01 19 11311015 11311015 G - DOCK6 Frame_Shift_Del p.Q2024Sfs*2 0.16 TCGA-EW-A2FV-01 19 1149389 1149389 G - SBNO2 Frame_Shift_Del p.P49Lfs*11 0.09 TCGA-EW-A2FV-01 19 11516051 11516051 G - RGL3 Frame_Shift_Del p.L350Cfs*16 0.10 TCGA-EW-A2FV-01 19 11665157 11665157 C - ELOF1 Frame_Shift_Del p.R3Afs*14 0.10 TCGA-EW-A2FV-01 19 12298391 12298391 C - ZNF136 Frame_Shift_Del p.H402Ifs*3 0.14 TCGA-EW-A2FV-01 19 1235824 1235824 G - C19orf26 Frame_Shift_Del p.L67Cfs*89 0.08 TCGA-EW-A2FV-01 19 1279160 1279160 C - C19orf24 3'UTR 0.09 TCGA-EW-A2FV-01 19 12800871 12800871 G - FBXW9 Frame_Shift_Del p.L313Cfs*139 0.09 TCGA-EW-A2FV-01 19 12912008 12912008 C - PRDX2 Frame_Shift_Del p.G23Afs*6 0.11 TCGA-EW-A2FV-01 19 13192528 13192528 C - NFIX Frame_Shift_Del p.S373Pfs*28 0.14 TCGA-EW-A2FV-01 19 13220487 13220487 G - TRMT1 Frame_Shift_Del p.M397Cfs*19 0.10 TCGA-EW-A2FV-01 19 13322929 13322929 A - CACNA1A Frame_Shift_Del p.A2098Qfs*24 0.14 TCGA-EW-A2FV-01 19 13373574 13373574 T - CACNA1A Frame_Shift_Del p.T1355Pfs*16 0.10 TCGA-EW-A2FV-01 19 14047200 14047200 T - PODNL1 Frame_Shift_Del p.N107Tfs*51 0.08 TCGA-EW-A2FV-01 19 14067247 14067247 C - DCAF15 Frame_Shift_Del p.A234Pfs*129 0.08 TCGA-EW-A2FV-01 19 14164810 14164810 C - PALM3 Frame_Shift_Del p.S544Lfs*12 0.08 TCGA-EW-A2FV-01 19 1462089 1462089 G - APC2 Frame_Shift_Del p.C589Ffs*46 0.10 TCGA-EW-A2FV-01 19 14804285 14804285 A - ZNF333 5'UTR 0.11 TCGA-EW-A2FV-01 19 14877075 14877075 G - EMR2 Frame_Shift_Del p.N203Mfs*60 0.10 TCGA-EW-A2FV-01 19 15052684 15052684 C - OR7C2 Frame_Shift_Del p.L130Cfs*7 0.08 TCGA-EW-A2FV-01 19 15299099 15299099 T - NOTCH3 Frame_Shift_Del p.N480Tfs*119 0.13 TCGA-EW-A2FV-01 19 15366939 15366939 T - BRD4 Frame_Shift_Del p.S563Afs*21 0.12 TCGA-EW-A2FV-01 19 15366982 15366982 T - BRD4 Frame_Shift_Del p.E549Kfs*35 0.09 TCGA-EW-A2FV-01 19 15529812 15529812 C - AKAP8L 5'UTR 0.13 TCGA-EW-A2FV-01 19 15564978 15564978 G - RASAL3 Frame_Shift_Del p.P754Rfs*89 0.10 TCGA-EW-A2FV-01 19 15565187 15565187 A - RASAL3 Frame_Shift_Del p.F715Lfs*128 0.09 TCGA-EW-A2FV-01 19 15839559 15839559 A - OR10H2 Frame_Shift_Del p.N236Tfs*39 0.08 TCGA-EW-A2FV-01 19 17273179 17273179 C - MYO9B Frame_Shift_Del p.M481Wfs*160 0.09 TCGA-EW-A2FV-01 19 17373536 17373536 C - USHBP1 Frame_Shift_Del p.G156Efs*32 0.10 TCGA-EW-A2FV-01 19 17441765 17441765 G - ANO8 Frame_Shift_Del p.L289Sfs*4 0.09 TCGA-EW-A2FV-01 19 17471343 17471343 G - PLVAP Frame_Shift_Del p.P439Hfs*77 0.10 TCGA-EW-A2FV-01 19 17471374 17471374 G - PLVAP Frame_Shift_Del p.Q429Rfs*9 0.08 TCGA-EW-A2FV-01 19 17487892 17487892 C - PLVAP Frame_Shift_Del p.G69Afs*7 0.09 TCGA-EW-A2FV-01 19 17756541 17756541 C - UNC13A Frame_Shift_Del p.Q767Rfs*64 0.11 TCGA-EW-A2FV-01 19 1783112 1783112 C - ATP8B3 Frame_Shift_Del p.G1273Dfs*8 0.08 TCGA-EW-A2FV-01 19 17951061 17951061 A - JAK3 Frame_Shift_Del p.F411Sfs*54 0.11 TCGA-EW-A2FV-01 19 1796204 1796204 T - ATP8B3 Frame_Shift_Del p.N605Tfs*30 0.12 TCGA-EW-A2FV-01 19 17988611 17988611 G - SLC5A5 Frame_Shift_Del p.G260Afs*2 0.09 TCGA-EW-A2FV-01 19 18096157 18096157 G - KCNN1 Frame_Shift_Del p.A320Pfs*4 0.11 TCGA-EW-A2FV-01 19 18377120 18377120 G - KIAA1683 Frame_Shift_Del p.R411Efs*28 0.09 TCGA-EW-A2FV-01 19 18377186 18377186 G - KIAA1683 Frame_Shift_Del p.T390Lfs*11 0.09 TCGA-EW-A2FV-01 19 18644119 18644119 G - FKBP8 Frame_Shift_Del p.I329Sfs*2 0.09 TCGA-EW-A2FV-01 19 18897352 18897352 T - COMP Frame_Shift_Del p.N415Tfs*100 0.08 TCGA-EW-A2FV-01 19 18966868 18966868 C - UPF1 Frame_Shift_Del p.L561Cfs*20 0.13 TCGA-EW-A2FV-01 19 18971743 18971743 G - UPF1 Frame_Shift_Del p.V804Cfs*50 0.10 TCGA-EW-A2FV-01 19 19206967 19206967 T - SLC25A42 Frame_Shift_Del p.L12Cfs*40 0.10 TCGA-EW-A2FV-01 19 19261529 19261529 T - MEF2B Frame_Shift_Del p.I6Sfs*14 0.12 TCGA-EW-A2FV-01 19 19327765 19327765 G - NCAN Frame_Shift_Del p.A3Pfs*10 0.10 TCGA-EW-A2FV-01 19 19360590 19360590 G - NCAN Frame_Shift_Del p.M1280Cfs*146 0.08 TCGA-EW-A2FV-01 19 19379517 19379517 G - TM6SF2 Frame_Shift_Del p.Y178Tfs*10 0.09 TCGA-EW-A2FV-01 19 19646155 19646155 C - YJEFN3 Frame_Shift_Del p.T148Pfs*16 0.08 TCGA-EW-A2FV-01 19 19745417 19745417 G - GMIP Frame_Shift_Del p.S662Afs*10 0.11 TCGA-EW-A2FV-01 19 19749251 19749251 T - GMIP Frame_Shift_Del p.K193Rfs*8 0.11 TCGA-EW-A2FV-01 19 19760467 19760467 A - ATP13A1 Frame_Shift_Del p.F847Lfs*6 0.11 TCGA-EW-A2FV-01 19 2037722 2037722 G - MKNK2 3'UTR 0.12 TCGA-EW-A2FV-01 19 2129372 2129372 A - AP3D1 Frame_Shift_Del p.F226Sfs*3 0.08 TCGA-EW-A2FV-01 19 21349150 21349150 T - ZNF431 Frame_Shift_Del p.F37Lfs*6 0.09 TCGA-EW-A2FV-01 19 2151258 2151258 G - AP3D1 Frame_Shift_Del p.R26Vfs*22 0.08 TCGA-EW-A2FV-01 19 2250374 2250374 C - AMH Frame_Shift_Del p.P152Rfs*25 0.12 TCGA-EW-A2FV-01 19 23836066 23836066 T - ZNF675 Frame_Shift_Del p.I557Yfs*35 0.08 TCGA-EW-A2FV-01 19 2399088 2399088 G - TMPRSS9 Frame_Shift_Del p.G104Afs*64 0.11 TCGA-EW-A2FV-01 19 2933683 2933683 T - ZNF77 Frame_Shift_Del p.K481Sfs*3 0.09 TCGA-EW-A2FV-01 19 2989706 2989706 G - TLE6 Frame_Shift_Del p.D390Mfs*63 0.13 TCGA-EW-A2FV-01 19 2997903 2997903 T - TLE2 Frame_Shift_Del p.K725Nfs*4 0.08 TCGA-EW-A2FV-01 19 31048130 31048130 G - ZNF536 3'UTR 0.09 TCGA-EW-A2FV-01 19 3150146 3150146 C - GNA15 Frame_Shift_Del p.M117* 0.12 TCGA-EW-A2FV-01 19 31767617 31767617 T - TSHZ3 Frame_Shift_Del p.M1028Wfs*2 0.08 TCGA-EW-A2FV-01 19 325695 325695 C - MIER2 Frame_Shift_Del p.V199Wfs*14 0.08 TCGA-EW-A2FV-01 19 32844747 32844747 T - ZNF507 Frame_Shift_Del p.L338* 0.11 TCGA-EW-A2FV-01 19 33095217 33095217 A - ANKRD27 Frame_Shift_Del p.Q870Rfs*3 0.16 TCGA-EW-A2FV-01 19 33464114 33464114 C - C19orf40 Frame_Shift_Del p.P6Lfs*41 0.10 TCGA-EW-A2FV-01 19 33616038 33616038 A - GPATCH1 Frame_Shift_Del p.E852Rfs*69 0.08 TCGA-EW-A2FV-01 19 33953930 33953930 T - PEPD Frame_Shift_Del p.V215Wfs*3 0.08 TCGA-EW-A2FV-01 19 34791691 34791691 T - KIAA0355 Frame_Shift_Del p.F105Sfs*27 0.10 TCGA-EW-A2FV-01 19 34810927 34810927 A - KIAA0355 Frame_Shift_Del p.K206Rfs*18 0.11 TCGA-EW-A2FV-01 19 34884158 34884158 G - GPI Frame_Shift_Del p.G282Efs*131 0.09 TCGA-EW-A2FV-01 19 3496767 3496767 C - DOHH Frame_Shift_Del p.D16Tfs*92 0.20 TCGA-EW-A2FV-01 19 34983983 34983983 A - WTIP Frame_Shift_Del p.V272Cfs*29 0.08 TCGA-EW-A2FV-01 19 35250501 35250501 T - ZNF599 Frame_Shift_Del p.K402Rfs*37 0.08 TCGA-EW-A2FV-01 19 3530816 3530816 G - FZR1 Frame_Shift_Del p.E228Kfs*5 0.10 TCGA-EW-A2FV-01 19 3548246 3548246 C - MFSD12 Frame_Shift_Del p.A177Pfs*109 0.11 TCGA-EW-A2FV-01 19 35749878 35749878 G - LSR Frame_Shift_Del p.D212Tfs*46 0.17 TCGA-EW-A2FV-01 19 35850854 35850854 G - FFAR3 3'UTR 0.10 TCGA-EW-A2FV-01 19 36033878 36033878 C - GAPDHS Frame_Shift_Del p.L232Sfs*15 0.10 TCGA-EW-A2FV-01 19 36034193 36034193 G - GAPDHS Intron 0.09 TCGA-EW-A2FV-01 19 36123844 36123844 C - RBM42 Frame_Shift_Del p.Q152Rfs*54 0.12 TCGA-EW-A2FV-01 19 36124052 36124052 C - RBM42 Frame_Shift_Del p.P196Lfs*10 0.16 TCGA-EW-A2FV-01 19 36134624 36134624 T - ETV2 Frame_Shift_Del p.L229Wfs*62 0.09 TCGA-EW-A2FV-01 19 3613565 3613565 C - CACTIN Frame_Shift_Del p.D459Tfs*10 0.12 TCGA-EW-A2FV-01 19 36215573 36215573 C - KMT2B Frame_Shift_Del p.R1125Afs*57 0.08 TCGA-EW-A2FV-01 19 36246746 36246746 A - HSPB6 Frame_Shift_Del p.F83Sfs*50 0.15 TCGA-EW-A2FV-01 19 36275116 36275116 G - ARHGAP33 Frame_Shift_Del p.F489Sfs*55 0.10 TCGA-EW-A2FV-01 19 36339908 36339908 G - NPHS1 Frame_Shift_Del p.Q328Rfs*30 0.10 TCGA-EW-A2FV-01 19 36342695 36342695 C - NPHS1 Frame_Shift_Del p.L16Cfs*2 0.12 TCGA-EW-A2FV-01 19 36352445 36352445 C - KIRREL2 Frame_Shift_Del p.P399Qfs*2 0.15 TCGA-EW-A2FV-01 19 36381288 36381288 A - NFKBID Frame_Shift_Del p.F237Lfs*4 0.17 TCGA-EW-A2FV-01 19 36499158 36499158 G - SYNE4 Frame_Shift_Del p.S81Lfs*22 0.12 TCGA-EW-A2FV-01 19 36499479 36499479 G - SYNE4 Frame_Shift_Del p.A36Rfs*67 0.09 TCGA-EW-A2FV-01 19 36562540 36562540 C - WDR62 Frame_Shift_Del p.H323Ifs*17 0.12 TCGA-EW-A2FV-01 19 36595695 36595695 C - WDR62 Frame_Shift_Del p.Q1448Sfs*89 0.12 TCGA-EW-A2FV-01 19 36604642 36604642 G - POLR2I 3'UTR 0.10 TCGA-EW-A2FV-01 19 37210007 37210007 A - ZNF567 Frame_Shift_Del p.N98Ifs*13 0.13 TCGA-EW-A2FV-01 19 37677592 37677592 T - ZNF585B Frame_Shift_Del p.T283Hfs*3 0.08 TCGA-EW-A2FV-01 19 38028550 38028550 A - ZNF793 Frame_Shift_Del p.M332Cfs*69 0.12 TCGA-EW-A2FV-01 19 38573436 38573436 T - SIPA1L3 Frame_Shift_Del p.L411Wfs*32 0.09 TCGA-EW-A2FV-01 19 38600940 38600940 C - SIPA1L3 Frame_Shift_Del p.K738Rfs*30 0.09 TCGA-EW-A2FV-01 19 38901626 38901626 T - RASGRP4 Frame_Shift_Del p.N622Ifs*39 0.09 TCGA-EW-A2FV-01 19 38912702 38912702 T - RASGRP4 Frame_Shift_Del p.I39Sfs*8 0.10 TCGA-EW-A2FV-01 19 38990571 38990571 A - RYR1 Frame_Shift_Del p.N2414Tfs*16 0.09 TCGA-EW-A2FV-01 19 39575915 39575915 C - PAPL Frame_Shift_Del p.L4Ffs*43 0.09 TCGA-EW-A2FV-01 19 3961142 3961142 G - DAPK3 Frame_Shift_Del p.P216Rfs*17 0.08 TCGA-EW-A2FV-01 19 39667245 39667245 T - PAK4 Frame_Shift_Del p.F459Lfs*7 0.17 TCGA-EW-A2FV-01 19 39876966 39876966 C - PAF1 Frame_Shift_Del p.E421Rfs*137 0.09 TCGA-EW-A2FV-01 19 39877187 39877187 T - PAF1 Frame_Shift_Del p.N373Tfs*185 0.08 TCGA-EW-A2FV-01 19 39966979 39966979 C - SUPT5H Frame_Shift_Del p.D1070Mfs*42 0.09 TCGA-EW-A2FV-01 19 4028830 4028830 G - PIAS4 Frame_Shift_Del p.N264Tfs*16 0.09 TCGA-EW-A2FV-01 19 40318257 40318257 C - DYRK1B Frame_Shift_Del p.E283Rfs*40 0.08 TCGA-EW-A2FV-01 19 40329830 40329830 T - FBL Frame_Shift_Del p.I132Lfs*13 0.10 TCGA-EW-A2FV-01 19 40368676 40368676 G - FCGBP Frame_Shift_Del p.N4225Tfs*173 0.09 TCGA-EW-A2FV-01 19 40504280 40504280 T - ZNF546 Frame_Shift_Del p.Q18Kfs*10 0.08 TCGA-EW-A2FV-01 19 41062064 41062064 G - SPTBN4 Frame_Shift_Del p.V1721Wfs*16 0.09 TCGA-EW-A2FV-01 19 41078263 41078263 T - SPTBN4 Frame_Shift_Del p.L2506Cfs*10 0.10 TCGA-EW-A2FV-01 19 41223578 41223578 G - ITPKC Frame_Shift_Del p.S181Hfs*123 0.16 TCGA-EW-A2FV-01 19 41515296 41515296 A - CYP2B6 Frame_Shift_Del p.E275Rfs*57 0.12 TCGA-EW-A2FV-01 19 41597694 41597694 T - CYP2A13 Frame_Shift_Del p.F238Lfs*51 0.11 TCGA-EW-A2FV-01 19 4175034 4175034 G - SIRT6 Frame_Shift_Del p.T244Pfs*19 0.13 TCGA-EW-A2FV-01 19 41854227 41854227 T - TGFB1 Frame_Shift_Del p.V164Wfs*45 0.10 TCGA-EW-A2FV-01 19 41888784 41888784 T - TMEM91 Frame_Shift_Del p.F107Sfs*11 0.10 TCGA-EW-A2FV-01 19 41889782 41889782 C - TMEM91 3'UTR 0.11 TCGA-EW-A2FV-01 19 42082629 42082629 G - CEACAM21 Frame_Shift_Del p.S5Qfs*21 0.10 TCGA-EW-A2FV-01 19 42090785 42090785 A - CEACAM21 Frame_Shift_Del p.T264Lfs*? 0.08 TCGA-EW-A2FV-01 19 42265987 42265987 T - CEACAM6 Frame_Shift_Del p.F272Lfs*20 0.08 TCGA-EW-A2FV-01 19 42301773 42301773 C - CEACAM3 Frame_Shift_Del p.L107Cfs*2 0.10 TCGA-EW-A2FV-01 19 42398323 42398323 G - ARHGEF1 Frame_Shift_Del p.V246Cfs*19 0.09 TCGA-EW-A2FV-01 19 42402722 42402722 A - ARHGEF1 Frame_Shift_Del p.Q433Rfs*9 0.12 TCGA-EW-A2FV-01 19 42482122 42482122 G - ATP1A3 Frame_Shift_Del p.R650Gfs*18 0.09 TCGA-EW-A2FV-01 19 42492660 42492660 C - ATP1A3 Frame_Shift_Del p.D34Tfs*11 0.08 TCGA-EW-A2FV-01 19 42585428 42585428 G - ZNF574 Frame_Shift_Del p.V892Sfs*47 0.10 TCGA-EW-A2FV-01 19 42814620 42814620 C - PRR19 Frame_Shift_Del p.S268Hfs*19 0.09 TCGA-EW-A2FV-01 19 42837793 42837793 T - MEGF8 Frame_Shift_Del p.F76Sfs*27 0.11 TCGA-EW-A2FV-01 19 42863307 42863307 G - MEGF8 Frame_Shift_Del p.R1736Afs*68 0.12 TCGA-EW-A2FV-01 19 42867275 42867275 C - MEGF8 Frame_Shift_Del p.M1980Cfs*47 0.11 TCGA-EW-A2FV-01 19 42867298 42867298 C - MEGF8 Frame_Shift_Del p.P1987Hfs*40 0.10 TCGA-EW-A2FV-01 19 42893162 42893162 G - CNFN Frame_Shift_Del p.Q10Sfs*99 0.08 TCGA-EW-A2FV-01 19 43098975 43098975 C - CEACAM8 Frame_Shift_Del p.I4Sfs*77 0.08 TCGA-EW-A2FV-01 19 43258581 43258581 G - PSG8 Frame_Shift_Del p.Q383Kfs*27 0.09 TCGA-EW-A2FV-01 19 4354332 4354332 C - MPND Frame_Shift_Del p.L255Wfs*4 0.14 TCGA-EW-A2FV-01 19 43702354 43702354 G - PSG4 Frame_Shift_Del p.C169Vfs*14 0.11 TCGA-EW-A2FV-01 19 43773578 43773578 C - PSG9 Frame_Shift_Del p.L4Sfs*22 0.10 TCGA-EW-A2FV-01 19 43866304 43866304 C - CD177 3'UTR 0.08 TCGA-EW-A2FV-01 19 44005909 44005909 G - PHLDB3 Frame_Shift_Del p.R171Afs*13 0.17 TCGA-EW-A2FV-01 19 44103271 44103271 T - ZNF576 Frame_Shift_Del p.S126Lfs*2 0.10 TCGA-EW-A2FV-01 19 44116268 44116268 C - SRRM5 5'UTR 0.09 TCGA-EW-A2FV-01 19 44159621 44159621 A - PLAUR Frame_Shift_Del p.C193Afs*49 0.08 TCGA-EW-A2FV-01 19 44160646 44160646 G - PLAUR Frame_Shift_Del p.Q153Rfs*38 0.09 TCGA-EW-A2FV-01 19 44531184 44531184 A - ZNF222 Frame_Shift_Del p.T18Pfs*7 0.08 TCGA-EW-A2FV-01 19 44610527 44610527 T - ZNF224 Intron 0.09 TCGA-EW-A2FV-01 19 44619977 44619977 A - ZNF225 5'UTR p.M1? 0.11 TCGA-EW-A2FV-01 19 44635066 44635066 G - ZNF225 Frame_Shift_Del p.S100Ifs*12 0.11 TCGA-EW-A2FV-01 19 45381689 45381689 G - PVRL2 Intron 0.09 TCGA-EW-A2FV-01 19 45391513 45391513 G - PVRL2 Frame_Shift_Del p.E500Rfs*55 0.10 TCGA-EW-A2FV-01 19 45448040 45448040 C - APOC4 Frame_Shift_Del p.P39Hfs*4 0.09 TCGA-EW-A2FV-01 19 45452066 45452066 C - APOC2 Frame_Shift_Del p.Q56Rfs*12 0.12 TCGA-EW-A2FV-01 19 4556017 4556017 C - SEMA6B Frame_Shift_Del p.V152Cfs*7 0.14 TCGA-EW-A2FV-01 19 45574942 45574942 G - ZNF296 Frame_Shift_Del p.H449Tfs*45 0.08 TCGA-EW-A2FV-01 19 45575048 45575048 G - ZNF296 Frame_Shift_Del p.Y414Tfs*25 0.13 TCGA-EW-A2FV-01 19 45810020 45810020 G - CKM Frame_Shift_Del p.A379Pfs*69 0.14 TCGA-EW-A2FV-01 19 45853775 45853775 C - KLC3 Frame_Shift_Del p.N415Tfs*47 0.09 TCGA-EW-A2FV-01 19 46116885 46116885 C - EML2 Frame_Shift_Del p.A781Pfs*42 0.12 TCGA-EW-A2FV-01 19 46195180 46195180 C - SNRPD2 5'UTR 0.10 TCGA-EW-A2FV-01 19 46196081 46196081 G - QPCTL Frame_Shift_Del p.A41Rfs*32 0.15 TCGA-EW-A2FV-01 19 46334771 46334771 T - SYMPK Frame_Shift_Del p.K490Sfs*17 0.09 TCGA-EW-A2FV-01 19 46521664 46521664 C - CCDC61 3'UTR 0.11 TCGA-EW-A2FV-01 19 4660709 4660709 C - C19orf10 Frame_Shift_Del p.G114Afs*23 0.09 TCGA-EW-A2FV-01 19 46834484 46834484 C - HIF3A Frame_Shift_Del p.S597Afs*14 0.12 TCGA-EW-A2FV-01 19 47177905 47177905 C - PRKD2 Frame_Shift_Del p.E838Sfs*66 0.11 TCGA-EW-A2FV-01 19 47207455 47207455 C - PRKD2 Frame_Shift_Del p.G287Afs*95 0.10 TCGA-EW-A2FV-01 19 47440627 47440627 T - ARHGAP35 Frame_Shift_Del p.F1264Lfs*14 0.13 TCGA-EW-A2FV-01 19 47773676 47773676 C - CCDC9 Frame_Shift_Del p.P306Qfs*122 0.08 TCGA-EW-A2FV-01 19 47876859 47876859 A - DHX34 Frame_Shift_Del p.K656Nfs*17 0.09 TCGA-EW-A2FV-01 19 47940791 47940791 T - SLC8A2 Frame_Shift_Del p.T680Rfs*6 0.09 TCGA-EW-A2FV-01 19 47995273 47995273 T - NAPA Frame_Shift_Del p.K222Sfs*22 0.09 TCGA-EW-A2FV-01 19 48025197 48025197 T - ZNF541 Frame_Shift_Del p.M1228* 0.08 TCGA-EW-A2FV-01 19 48041623 48041623 G - ZNF541 Frame_Shift_Del p.P976Hfs*29 0.11 TCGA-EW-A2FV-01 19 48239674 48239674 T - EHD2 Frame_Shift_Del p.F322Lfs*10 0.11 TCGA-EW-A2FV-01 19 48305113 48305113 T - TPRX1 Frame_Shift_Del p.K385Nfs*14 0.10 TCGA-EW-A2FV-01 19 48981708 48981708 T - CYTH2 Frame_Shift_Del p.Y325Tfs*50 0.12 TCGA-EW-A2FV-01 19 49142838 49142838 T - CA11 Frame_Shift_Del p.N203Tfs*20 0.12 TCGA-EW-A2FV-01 19 49244209 49244209 T - IZUMO1 Frame_Shift_Del p.T337Pfs*? 0.09 TCGA-EW-A2FV-01 19 4930807 4930807 C - MIR4747 5'Flank 0.09 TCGA-EW-A2FV-01 19 49474255 49474255 G - GYS1 Frame_Shift_Del p.S526Vfs*76 0.10 TCGA-EW-A2FV-01 19 49488799 49488799 C - GYS1 Frame_Shift_Del p.A248Qfs*30 0.09 TCGA-EW-A2FV-01 19 49558683 49558683 G - CGB7 5'UTR 0.09 TCGA-EW-A2FV-01 19 49982301 49982301 C - FLT3LG Frame_Shift_Del p.D161Tfs*104 0.11 TCGA-EW-A2FV-01 19 50155767 50155767 G - SCAF1 Frame_Shift_Del p.G708Afs*30 0.14 TCGA-EW-A2FV-01 19 50177058 50177058 G - BCL2L12 3'UTR 0.09 TCGA-EW-A2FV-01 19 50360327 50360327 C - PTOV1 Frame_Shift_Del p.Y220Tfs*68 0.13 TCGA-EW-A2FV-01 19 50393003 50393003 T - IL4I1 Frame_Shift_Del p.K565Rfs*? 0.08 TCGA-EW-A2FV-01 19 50412411 50412411 C - NUP62 Frame_Shift_Del p.S220Afs*6 0.10 TCGA-EW-A2FV-01 19 50412463 50412463 C - NUP62 Frame_Shift_Del p.G201Vfs*25 0.09 TCGA-EW-A2FV-01 19 50549825 50549825 A - ZNF473 Frame_Shift_Del p.T710Rfs*32 0.11 TCGA-EW-A2FV-01 19 50906779 50906779 C - POLD1 Frame_Shift_Del p.D391Tfs*2 0.10 TCGA-EW-A2FV-01 19 50978652 50978652 C - FAM71E1 Frame_Shift_Del p.A141Pfs*28 0.08 TCGA-EW-A2FV-01 19 51010866 51010866 C - JOSD2 Frame_Shift_Del p.L80Wfs*25 0.08 TCGA-EW-A2FV-01 19 51274292 51274292 C - GPR32 Frame_Shift_Del p.V147Sfs*4 0.09 TCGA-EW-A2FV-01 19 51323545 51323545 G - KLK1 Frame_Shift_Del p.L121Sfs*6 0.09 TCGA-EW-A2FV-01 19 51462382 51462382 G - KLK6 3'UTR 0.09 TCGA-EW-A2FV-01 19 51532448 51532448 C - KLK12 Frame_Shift_Del p.G243Efs*? 0.10 TCGA-EW-A2FV-01 19 52033202 52033202 G - SIGLEC6 Frame_Shift_Del p.P263Lfs*22 0.08 TCGA-EW-A2FV-01 19 52132632 52132632 T - SIGLEC5 Frame_Shift_Del p.T227Lfs*20 0.13 TCGA-EW-A2FV-01 19 52250033 52250033 A - FPR1 Frame_Shift_Del p.F72Sfs*33 0.11 TCGA-EW-A2FV-01 19 52327680 52327680 A - FPR3 Frame_Shift_Del p.I228Ffs*6 0.08 TCGA-EW-A2FV-01 19 5244483 5244483 T - PTPRS Frame_Shift_Del p.A334Lfs*7 0.10 TCGA-EW-A2FV-01 19 5274230 5274230 C - PTPRS Frame_Shift_Del p.V73Sfs*19 0.12 TCGA-EW-A2FV-01 19 52786623 52786623 A - ZNF766 Frame_Shift_Del p.N79Ifs*19 0.08 TCGA-EW-A2FV-01 19 52909810 52909810 A - ZNF528 Frame_Shift_Del p.K63Rfs*13 0.11 TCGA-EW-A2FV-01 19 54245815 54245815 A - MIR520H RNA 0.08 TCGA-EW-A2FV-01 19 54377776 54377776 C - MYADM 3'UTR 0.09 TCGA-EW-A2FV-01 19 54483177 54483177 G - CACNG8 Frame_Shift_Del p.G143Vfs*29 0.09 TCGA-EW-A2FV-01 19 54502977 54502977 G - CACNG6 Frame_Shift_Del p.G166Vfs*22 0.11 TCGA-EW-A2FV-01 19 5456513 5456513 C - ZNRF4 Frame_Shift_Del p.W339Gfs*? 0.13 TCGA-EW-A2FV-01 19 54599095 54599095 T - OSCAR Frame_Shift_Del p.M237Cfs*26 0.17 TCGA-EW-A2FV-01 19 54660581 54660581 C - LENG1 Frame_Shift_Del p.K166Rfs*102 0.10 TCGA-EW-A2FV-01 19 54758762 54758762 G - LILRB5 Frame_Shift_Del p.P364Rfs*4 0.12 TCGA-EW-A2FV-01 19 54783256 54783256 A - LILRB2 Frame_Shift_Del p.L201* 0.10 TCGA-EW-A2FV-01 19 54804201 54804201 T - LILRA3 5'UTR 0.10 TCGA-EW-A2FV-01 19 55112171 55112171 C - LILRA1 Frame_Shift_Del p.Q455Rfs*13 0.13 TCGA-EW-A2FV-01 19 55143624 55143624 T - LILRB1 Frame_Shift_Del p.Y200Mfs*21 0.10 TCGA-EW-A2FV-01 19 55148199 55148199 C - LILRB1 Frame_Shift_Del p.Q612Rfs*3 0.10 TCGA-EW-A2FV-01 19 55148220 55148220 C - LILRB1 Frame_Shift_Del p.Q618Sfs*5 0.09 TCGA-EW-A2FV-01 19 55263678 55263678 A - KIR2DL3 Frame_Shift_Del p.M278Wfs*11 0.09 TCGA-EW-A2FV-01 19 55331403 55331403 T - KIR3DL1 Frame_Shift_Del p.S198Lfs*43 0.08 TCGA-EW-A2FV-01 19 55362682 55362682 C - KIR3DL2 Frame_Shift_Del p.L15Cfs*71 0.09 TCGA-EW-A2FV-01 19 55439117 55439117 A - NLRP7 Frame_Shift_Del p.F946Sfs*31 0.08 TCGA-EW-A2FV-01 19 55590409 55590409 C - EPS8L1 Frame_Shift_Del p.Q35Sfs*8 0.09 TCGA-EW-A2FV-01 19 55663215 55663215 T - TNNI3 Frame_Shift_Del p.K207Sfs*14 0.10 TCGA-EW-A2FV-01 19 55686270 55686270 A - SYT5 Frame_Shift_Del p.M269Rfs*3 0.09 TCGA-EW-A2FV-01 19 55898560 55898560 G - RPL28 Intron 0.09 TCGA-EW-A2FV-01 19 56029404 56029404 C - SSC5D Frame_Shift_Del p.M1255* 0.08 TCGA-EW-A2FV-01 19 56220349 56220349 T - NLRP9 Frame_Shift_Del p.I969Ffs*4 0.10 TCGA-EW-A2FV-01 19 56320337 56320337 A - NLRP11 Frame_Shift_Del p.Y547Tfs*12 0.09 TCGA-EW-A2FV-01 19 56321307 56321307 T - NLRP11 Frame_Shift_Del p.K223Nfs*12 0.08 TCGA-EW-A2FV-01 19 56545000 56545000 C - NLRP5 Frame_Shift_Del p.H848Tfs*2 0.09 TCGA-EW-A2FV-01 19 5707766 5707766 C - LONP1 Frame_Shift_Del p.G335Afs*32 0.10 TCGA-EW-A2FV-01 19 5737208 5737208 T - CATSPERD Frame_Shift_Del p.C152Vfs*47 0.08 TCGA-EW-A2FV-01 19 57744964 57744964 C - AURKC Frame_Shift_Del p.S193Pfs*2 0.09 TCGA-EW-A2FV-01 19 57746379 57746379 C - AURKC Frame_Shift_Del p.F239Lfs*16 0.10 TCGA-EW-A2FV-01 19 57765090 57765090 T - ZNF805 Frame_Shift_Del p.F302Lfs*85 0.09 TCGA-EW-A2FV-01 19 58899565 58899565 G - RPS5 Frame_Shift_Del p.K22Sfs*20 0.08 TCGA-EW-A2FV-01 19 6380397 6380397 C - GTF2F1 Frame_Shift_Del p.L484* 0.10 TCGA-EW-A2FV-01 19 6419226 6419226 G - KHSRP Frame_Shift_Del p.P198Qfs*9 0.14 TCGA-EW-A2FV-01 19 6466942 6466942 C - CRB3 Intron 0.11 TCGA-EW-A2FV-01 19 6711039 6711039 C - C3 Frame_Shift_Del p.D480Tfs*14 0.12 TCGA-EW-A2FV-01 19 6720546 6720546 G - C3 Frame_Shift_Del p.L19Wfs*49 0.09 TCGA-EW-A2FV-01 19 6977272 6977272 T - EMR4P RNA 0.08 TCGA-EW-A2FV-01 19 7120656 7120656 C - INSR Frame_Shift_Del p.V1212Sfs*35 0.10 TCGA-EW-A2FV-01 19 727620 727620 G - PALM Frame_Shift_Del p.D67Mfs*4 0.16 TCGA-EW-A2FV-01 19 7534875 7534875 C - ARHGEF18 Frame_Shift_Del p.P1104Lfs*84 0.13 TCGA-EW-A2FV-01 19 7697393 7697393 G - PCP2 Frame_Shift_Del p.T60Pfs*24 0.11 TCGA-EW-A2FV-01 19 7923097 7923097 G - EVI5L Frame_Shift_Del p.E419Rfs*101 0.15 TCGA-EW-A2FV-01 19 804616 804616 G - PTBP1 Frame_Shift_Del p.M175Wfs*21 0.15 TCGA-EW-A2FV-01 19 8152771 8152771 C - FBN3 Frame_Shift_Del p.G2186Afs*179 0.11 TCGA-EW-A2FV-01 19 8175743 8175743 C - FBN3 Frame_Shift_Del p.G1440Vfs*14 0.09 TCGA-EW-A2FV-01 19 8182394 8182394 G - FBN3 Frame_Shift_Del p.C1140Afs*48 0.12 TCGA-EW-A2FV-01 19 8615149 8615149 C - MYO1F Frame_Shift_Del p.R333Afs*7 0.15 TCGA-EW-A2FV-01 19 8642212 8642212 G - MYO1F 5'UTR 0.09 TCGA-EW-A2FV-01 19 8841689 8841689 A - OR2Z1 Frame_Shift_Del p.I101Yfs*6 0.14 TCGA-EW-A2FV-01 19 9045633 9045633 T - MUC16 Frame_Shift_Del p.S12000Afs*6 0.08 TCGA-EW-A2FV-01 19 9054316 9054316 T - MUC16 Frame_Shift_Del p.I10436Yfs*11 0.08 TCGA-EW-A2FV-01 19 9296985 9296985 T - OR7D2 Frame_Shift_Del p.F178Sfs*4 0.09 TCGA-EW-A2FV-01 19 9453202 9453202 G - ZNF559 Frame_Shift_Del p.A361Lfs*12 0.11 TCGA-EW-A2FV-01 19 9644628 9644628 A - ZNF426 Frame_Shift_Del p.F44Lfs*27 0.08 TCGA-EW-A2FV-01 19 9939022 9939022 G - UBL5 Frame_Shift_Del p.V4Lfs*27 0.12 TCGA-EW-A2FV-01 1 100330093 100330093 A - AGL Frame_Shift_Del p.K206Rfs*34 0.08 TCGA-EW-A2FV-01 1 10689597 10689597 C - PEX14 Frame_Shift_Del p.P230Lfs*27 0.10 TCGA-EW-A2FV-01 1 10689843 10689843 G - PEX14 Frame_Shift_Del p.E312Rfs*23 0.09 TCGA-EW-A2FV-01 1 10689939 10689939 G - PEX14 Frame_Shift_Del p.V345Cfs*47 0.10 TCGA-EW-A2FV-01 1 10714568 10714568 A - CASZ1 Frame_Shift_Del p.N583Tfs*103 0.09 TCGA-EW-A2FV-01 1 109490318 109490318 T - CLCC1 Frame_Shift_Del p.K85Rfs*17 0.08 TCGA-EW-A2FV-01 1 109773525 109773525 T - SARS Frame_Shift_Del p.W159Gfs*17 0.09 TCGA-EW-A2FV-01 1 110019467 110019467 G - SYPL2 Frame_Shift_Del p.D110Tfs*10 0.10 TCGA-EW-A2FV-01 1 11014178 11014178 T - C1orf127 Frame_Shift_Del p.T333Pfs*10 0.10 TCGA-EW-A2FV-01 1 110169376 110169376 C - AMPD2 Frame_Shift_Del p.K242Rfs*121 0.13 TCGA-EW-A2FV-01 1 110256057 110256057 G - GSTM5 Intron 0.12 TCGA-EW-A2FV-01 1 110467769 110467769 C - CSF1 Frame_Shift_Del p.L543* 0.10 TCGA-EW-A2FV-01 1 110558059 110558059 G - AHCYL1 Frame_Shift_Del p.G231Efs*3 0.11 TCGA-EW-A2FV-01 1 110740729 110740729 G - SLC6A17 Frame_Shift_Del p.A617Pfs*5 0.10 TCGA-EW-A2FV-01 1 11087493 11087493 T - MASP2 Frame_Shift_Del p.R504Dfs*30 0.10 TCGA-EW-A2FV-01 1 11115916 11115916 G - SRM Frame_Shift_Del p.V230Wfs*37 0.14 TCGA-EW-A2FV-01 1 111966180 111966180 A - OVGP1 Frame_Shift_Del p.L157Sfs*3 0.10 TCGA-EW-A2FV-01 1 112319759 112319759 T - KCND3 Frame_Shift_Del p.K552Rfs*44 0.12 TCGA-EW-A2FV-01 1 113242869 113242869 G - MOV10 Frame_Shift_Del p.Y944Ifs*22 0.12 TCGA-EW-A2FV-01 1 113245269 113245269 G - RHOC Frame_Shift_Del p.N109Tfs*13 0.08 TCGA-EW-A2FV-01 1 113254984 113254984 G - PPM1J Frame_Shift_Del p.N276Mfs*37 0.09 TCGA-EW-A2FV-01 1 113255033 113255033 C - PPM1J Frame_Shift_Del p.G259Afs*7 0.10 TCGA-EW-A2FV-01 1 114301359 114301359 A - PHTF1 Intron 0.09 TCGA-EW-A2FV-01 1 114310991 114310991 T - RSBN1 Frame_Shift_Del p.N560Ifs*42 0.08 TCGA-EW-A2FV-01 1 114354423 114354423 G - RSBN1 Frame_Shift_Del p.S205Afs*24 0.12 TCGA-EW-A2FV-01 1 115166220 115166220 T - DENND2C Frame_Shift_Del p.N284Tfs*84 0.09 TCGA-EW-A2FV-01 1 115221011 115221011 A - AMPD1 Frame_Shift_Del p.F378Lfs*4 0.08 TCGA-EW-A2FV-01 1 115251216 115251216 T - NRAS Frame_Shift_Del p.K170Nfs*19 0.09 TCGA-EW-A2FV-01 1 115284222 115284222 A - CSDE1 Frame_Shift_Del p.S22Lfs*26 0.08 TCGA-EW-A2FV-01 1 11584078 11584078 C - PTCHD2 Frame_Shift_Del p.W816Gfs*21 0.08 TCGA-EW-A2FV-01 1 116206624 116206624 T - VANGL1 Frame_Shift_Del p.F183Lfs*88 0.10 TCGA-EW-A2FV-01 1 116243819 116243819 G - CASQ2 3'UTR 0.08 TCGA-EW-A2FV-01 1 116243830 116243830 T - CASQ2 3'UTR 0.09 TCGA-EW-A2FV-01 1 116247829 116247829 G - CASQ2 Frame_Shift_Del p.P308Rfs*27 0.10 TCGA-EW-A2FV-01 1 116562250 116562250 T - SLC22A15 Frame_Shift_Del p.F118Sfs*50 0.08 TCGA-EW-A2FV-01 1 117644133 117644133 T - TTF2 Frame_Shift_Del p.F1160Lfs*20 0.08 TCGA-EW-A2FV-01 1 118501625 118501625 G - WDR3 Frame_Shift_Del 0.14 TCGA-EW-A2FV-01 1 118644412 118644412 G - SPAG17 Frame_Shift_Del p.T196Pfs*3 0.09 TCGA-EW-A2FV-01 1 11888530 11888530 A - CLCN6 Frame_Shift_Del p.K325Nfs*15 0.09 TCGA-EW-A2FV-01 1 11894022 11894022 C - CLCN6 Frame_Shift_Del p.L488Ffs*15 0.08 TCGA-EW-A2FV-01 1 120496255 120496255 T - NOTCH2 Frame_Shift_Del p.N759Mfs*18 0.08 TCGA-EW-A2FV-01 1 120510753 120510753 G - NOTCH2 Frame_Shift_Del p.P404Hfs*31 0.10 TCGA-EW-A2FV-01 1 12186099 12186099 A - TNFRSF8 Frame_Shift_Del p.I416Ffs*18 0.11 TCGA-EW-A2FV-01 1 12248883 12248883 G - TNFRSF1B Frame_Shift_Del p.S38Afs*57 0.11 TCGA-EW-A2FV-01 1 1322808 1322808 G - CCNL2 Frame_Shift_Del p.Q456Rfs*71 0.10 TCGA-EW-A2FV-01 1 1325909 1325909 A - CCNL2 Frame_Shift_Del p.L265Cfs*14 0.13 TCGA-EW-A2FV-01 1 14106232 14106232 C - PRDM2 Frame_Shift_Del p.I650Lfs*16 0.08 TCGA-EW-A2FV-01 1 14106292 14106292 C - PRDM2 Frame_Shift_Del p.P668Lfs*34 0.08 TCGA-EW-A2FV-01 1 14107343 14107343 C - PRDM2 Frame_Shift_Del p.P1019Hfs*22 0.09 TCGA-EW-A2FV-01 1 143664051 143664051 G - RP6-206I17.1 RNA 0.09 TCGA-EW-A2FV-01 1 145498116 145498116 T - LIX1L Frame_Shift_Del p.Q238Nfs*12 0.10 TCGA-EW-A2FV-01 1 147084716 147084716 C - BCL9 Frame_Shift_Del p.P31Lfs*3 0.08 TCGA-EW-A2FV-01 1 147084848 147084848 A - BCL9 Frame_Shift_Del p.A75Hfs*11 0.10 TCGA-EW-A2FV-01 1 147086319 147086319 C - BCL9 Frame_Shift_Del p.S157Pfs*37 0.09 TCGA-EW-A2FV-01 1 147126370 147126370 C - ACP6 Frame_Shift_Del p.G240Afs*31 0.10 TCGA-EW-A2FV-01 1 149882237 149882237 C - SV2A Frame_Shift_Del p.G325Vfs*27 0.09 TCGA-EW-A2FV-01 1 150230575 150230575 G - CA14 Frame_Shift_Del 0.10 TCGA-EW-A2FV-01 1 150598102 150598102 G - ENSA Intron 0.10 TCGA-EW-A2FV-01 1 150769284 150769284 G - CTSK Frame_Shift_Del p.K328Rfs*39 0.09 TCGA-EW-A2FV-01 1 150812028 150812028 T - ARNT Frame_Shift_Del p.K125Nfs*5 0.09 TCGA-EW-A2FV-01 1 150938602 150938602 G - CERS2 3'UTR 0.09 TCGA-EW-A2FV-01 1 150960797 150960797 A - ANXA9 Frame_Shift_Del p.K278Nfs*16 0.09 TCGA-EW-A2FV-01 1 151010121 151010121 G - BNIPL Frame_Shift_Del p.D41Mfs*35 0.08 TCGA-EW-A2FV-01 1 151211634 151211634 A - PIP5K1A Frame_Shift_Del p.A421Pfs*35 0.08 TCGA-EW-A2FV-01 1 151317608 151317608 G - RFX5 Frame_Shift_Del p.S70Qfs*15 0.09 TCGA-EW-A2FV-01 1 151498169 151498169 G - CGN Frame_Shift_Del p.L557Cfs*51 0.09 TCGA-EW-A2FV-01 1 151742679 151742679 A - OAZ3 Frame_Shift_Del p.K126Rfs*9 0.08 TCGA-EW-A2FV-01 1 151774286 151774286 G - LINGO4 Frame_Shift_Del p.L299Wfs*25 0.19 TCGA-EW-A2FV-01 1 151810591 151810591 A - C2CD4D Frame_Shift_Del p.F292Sfs*14 0.14 TCGA-EW-A2FV-01 1 152085297 152085297 T - TCHH Frame_Shift_Del p.E132Dfs*17 0.08 TCGA-EW-A2FV-01 1 152325447 152325447 T - FLG2 Frame_Shift_Del p.Q1605Hfs*20 0.12 TCGA-EW-A2FV-01 1 152325499 152325499 C - FLG2 Frame_Shift_Del p.G1588Afs*37 0.08 TCGA-EW-A2FV-01 1 152692634 152692634 G - C1orf68 Frame_Shift_Del p.G214Afs*21 0.13 TCGA-EW-A2FV-01 1 153362605 153362605 T - S100A8 Frame_Shift_Del p.S86Afs*10 0.09 TCGA-EW-A2FV-01 1 153517142 153517142 G - S100A4 Frame_Shift_Del p.S44Afs*15 0.09 TCGA-EW-A2FV-01 1 153656228 153656228 C - NPR1 Frame_Shift_Del p.L472Wfs*16 0.08 TCGA-EW-A2FV-01 1 153742742 153742742 C - INTS3 Frame_Shift_Del p.L821Wfs*4 0.08 TCGA-EW-A2FV-01 1 154516560 154516560 T - TDRD10 Frame_Shift_Del p.F210Sfs*89 0.08 TCGA-EW-A2FV-01 1 154527953 154527953 G - UBE2Q1 Frame_Shift_Del p.P163Lfs*39 0.08 TCGA-EW-A2FV-01 1 154962078 154962078 T - FLAD1 Frame_Shift_Del p.I387Mfs*81 0.12 TCGA-EW-A2FV-01 1 154991104 154991104 T - DCST2 Frame_Shift_Del p.G747Efs*? 0.10 TCGA-EW-A2FV-01 1 155026955 155026955 C - ADAM15 Frame_Shift_Del p.L197Wfs*13 0.13 TCGA-EW-A2FV-01 1 155030411 155030411 C - ADAM15 Frame_Shift_Del p.P502Lfs*5 0.10 TCGA-EW-A2FV-01 1 155159710 155159710 G - MUC1 Frame_Shift_Del p.Y449Mfs*115 0.09 TCGA-EW-A2FV-01 1 155177643 155177643 C - THBS3 Frame_Shift_Del p.A9Pfs*19 0.10 TCGA-EW-A2FV-01 1 155221333 155221333 G - FAM189B Frame_Shift_Del p.P285Lfs*36 0.09 TCGA-EW-A2FV-01 1 155231460 155231460 A - SCAMP3 Frame_Shift_Del p.F44Lfs*57 0.10 TCGA-EW-A2FV-01 1 155260308 155260308 G - PKLR 3'UTR 0.14 TCGA-EW-A2FV-01 1 155292538 155292538 G - RUSC1 Frame_Shift_Del p.G326Afs*19 0.12 TCGA-EW-A2FV-01 1 155296403 155296403 T - RUSC1 Frame_Shift_Del p.F633Sfs*101 0.09 TCGA-EW-A2FV-01 1 155311731 155311731 A - ASH1L Frame_Shift_Del p.F2819Sfs*28 0.08 TCGA-EW-A2FV-01 1 155735520 155735520 T - GON4L Frame_Shift_Del p.K1248Nfs*2 0.11 TCGA-EW-A2FV-01 1 155736436 155736436 T - GON4L Frame_Shift_Del p.N943Ifs*2 0.08 TCGA-EW-A2FV-01 1 155884088 155884088 T - KIAA0907 Frame_Shift_Del p.T557Lfs*73 0.10 TCGA-EW-A2FV-01 1 155891365 155891365 G - KIAA0907 Frame_Shift_Del p.P356Hfs*28 0.08 TCGA-EW-A2FV-01 1 155912103 155912103 G - RXFP4 Frame_Shift_Del p.A203Pfs*70 0.18 TCGA-EW-A2FV-01 1 155927550 155927550 C - ARHGEF2 Frame_Shift_Del p.D557Mfs*25 0.09 TCGA-EW-A2FV-01 1 156047205 156047205 G - MEX3A Frame_Shift_Del p.A244Qfs*234 0.08 TCGA-EW-A2FV-01 1 1563151 1563151 G - MIB2 Frame_Shift_Del p.G657Afs*73 0.14 TCGA-EW-A2FV-01 1 156513794 156513794 G - IQGAP3 Frame_Shift_Del p.Q837Kfs*7 0.10 TCGA-EW-A2FV-01 1 15653534 15653534 G - FHAD1 Intron 0.11 TCGA-EW-A2FV-01 1 156563200 156563200 C - APOA1BP Frame_Shift_Del p.M174* 0.08 TCGA-EW-A2FV-01 1 156639066 156639066 C - NES 3'UTR 0.11 TCGA-EW-A2FV-01 1 156693167 156693167 G - ISG20L2 Frame_Shift_Del p.L346* 0.10 TCGA-EW-A2FV-01 1 156811877 156811877 C - INSRR Intron 0.09 TCGA-EW-A2FV-01 1 156882381 156882381 C - PEAR1 Frame_Shift_Del p.P727Qfs*18 0.08 TCGA-EW-A2FV-01 1 156899099 156899099 A - LRRC71 Frame_Shift_Del p.T343Rfs*9 0.10 TCGA-EW-A2FV-01 1 156914828 156914828 G - ARHGEF11 Frame_Shift_Del p.L992Wfs*15 0.09 TCGA-EW-A2FV-01 1 156917642 156917642 G - ARHGEF11 Frame_Shift_Del p.Q754Kfs*15 0.08 TCGA-EW-A2FV-01 1 156925514 156925514 G - ARHGEF11 Frame_Shift_Del p.S585Afs*21 0.12 TCGA-EW-A2FV-01 1 15694076 15694076 A - FHAD1 Frame_Shift_Del p.K305Rfs*6 0.19 TCGA-EW-A2FV-01 1 1575696 1575696 G - CDK11B Frame_Shift_Del p.P401Lfs*31 0.10 TCGA-EW-A2FV-01 1 157650528 157650528 G - FCRL3 Frame_Shift_Del p.Q664Rfs*17 0.11 TCGA-EW-A2FV-01 1 15767074 15767074 C - CTRC Frame_Shift_Del p.H74Tfs*60 0.08 TCGA-EW-A2FV-01 1 15792589 15792589 A - CELA2A Frame_Shift_Del p.T198Pfs*3 0.08 TCGA-EW-A2FV-01 1 158054269 158054269 C - KIRREL Frame_Shift_Del p.H139Tfs*35 0.10 TCGA-EW-A2FV-01 1 158150894 158150894 G - CD1D Frame_Shift_Del p.C3Afs*66 0.16 TCGA-EW-A2FV-01 1 158151261 158151261 C - CD1D Frame_Shift_Del p.L28Sfs*41 0.08 TCGA-EW-A2FV-01 1 158326540 158326540 C - CD1E Frame_Shift_Del p.H342Tfs*36 0.09 TCGA-EW-A2FV-01 1 158587362 158587362 T - SPTA1 Frame_Shift_Del p.T2189Qfs*21 0.08 TCGA-EW-A2FV-01 1 158612306 158612306 A - SPTA1 Frame_Shift_Del p.F1544Lfs*22 0.09 TCGA-EW-A2FV-01 1 158617432 158617432 T - SPTA1 Frame_Shift_Del p.M1265Wfs*3 0.11 TCGA-EW-A2FV-01 1 158637797 158637797 A - SPTA1 Frame_Shift_Del p.L630Wfs*18 0.09 TCGA-EW-A2FV-01 1 159796635 159796635 G - SLAMF8 5'UTR 0.10 TCGA-EW-A2FV-01 1 159807764 159807764 T - C1orf204 Frame_Shift_Del p.S218Afs*11 0.09 TCGA-EW-A2FV-01 1 159846431 159846431 T - CCDC19 Frame_Shift_Del p.S423Vfs*103 0.09 TCGA-EW-A2FV-01 1 159898320 159898320 G - IGSF9 Frame_Shift_Del p.P953Qfs*34 0.14 TCGA-EW-A2FV-01 1 159900113 159900113 C - IGSF9 Frame_Shift_Del p.D644Ifs*109 0.12 TCGA-EW-A2FV-01 1 159906265 159906265 G - IGSF9 Frame_Shift_Del p.S200Afs*23 0.14 TCGA-EW-A2FV-01 1 160151519 160151519 T - ATP1A4 Frame_Shift_Del p.F929Lfs*27 0.10 TCGA-EW-A2FV-01 1 160168837 160168837 C - CASQ1 Frame_Shift_Del p.L328Cfs*19 0.08 TCGA-EW-A2FV-01 1 16052009 16052009 C - PLEKHM2 Frame_Shift_Del p.P304Rfs*91 0.11 TCGA-EW-A2FV-01 1 160651136 160651136 T - CD48 Frame_Shift_Del p.R170Gfs*33 0.08 TCGA-EW-A2FV-01 1 160917820 160917820 C - ITLN2 Frame_Shift_Del p.E242Nfs*25 0.09 TCGA-EW-A2FV-01 1 161011511 161011511 C - USF1 Frame_Shift_Del p.S135Vfs*28 0.10 TCGA-EW-A2FV-01 1 161022461 161022461 G - ARHGAP30 Frame_Shift_Del p.P264Hfs*21 0.08 TCGA-EW-A2FV-01 1 161047436 161047436 G - PVRL4 Frame_Shift_Del p.S180Afs*2 0.14 TCGA-EW-A2FV-01 1 161163546 161163546 A - ADAMTS4 Frame_Shift_Del p.V540Afs*41 0.09 TCGA-EW-A2FV-01 1 161275696 161275696 C - MPZ Frame_Shift_Del p.L240Wfs*12 0.08 TCGA-EW-A2FV-01 1 161495867 161495867 C - HSPA6 Frame_Shift_Del p.Q475Rfs*2 0.09 TCGA-EW-A2FV-01 1 16199429 16199429 A - SPEN Frame_Shift_Del p.M69Wfs*29 0.10 TCGA-EW-A2FV-01 1 162368821 162368821 T - SH2D1B Frame_Shift_Del p.K85Nfs*14 0.09 TCGA-EW-A2FV-01 1 162381803 162381803 C - SH2D1B Frame_Shift_Del p.D2Ifs*9 0.08 TCGA-EW-A2FV-01 1 162767697 162767697 T - HSD17B7 Frame_Shift_Del p.F147Lfs*3 0.09 TCGA-EW-A2FV-01 1 163042223 163042223 A - RGS4 Frame_Shift_Del p.K126Nfs*23 0.08 TCGA-EW-A2FV-01 1 16377043 16377043 T - CLCNKB Frame_Shift_Del p.L335Sfs*14 0.08 TCGA-EW-A2FV-01 1 1647819 1647819 T - CDK11A Frame_Shift_Del p.R152Gfs*18 0.09 TCGA-EW-A2FV-01 1 167381271 167381271 C - POU2F1 Frame_Shift_Del p.S546Lfs*2 0.09 TCGA-EW-A2FV-01 1 167798522 167798522 T - ADCY10 Frame_Shift_Del p.T1245Lfs*12 0.08 TCGA-EW-A2FV-01 1 169762038 169762038 A - METTL18 Frame_Shift_Del p.S267Lfs*12 0.08 TCGA-EW-A2FV-01 1 170967473 170967473 A - MROH9 Intron 0.08 TCGA-EW-A2FV-01 1 171250029 171250029 A - FMO1 Frame_Shift_Del p.N245Ifs*8 0.08 TCGA-EW-A2FV-01 1 171509792 171509792 C - PRRC2C Frame_Shift_Del p.P1062Hfs*49 0.08 TCGA-EW-A2FV-01 1 171761203 171761203 C - METTL13 Frame_Shift_Del p.L509Sfs*37 0.09 TCGA-EW-A2FV-01 1 173454539 173454539 T - PRDX6 Frame_Shift_Del p.L98Yfs*32 0.09 TCGA-EW-A2FV-01 1 17371314 17371314 C - SDHB Frame_Shift_Del p.D48Tfs*29 0.08 TCGA-EW-A2FV-01 1 173931077 173931077 G - RC3H1 Frame_Shift_Del p.P663Hfs*89 0.08 TCGA-EW-A2FV-01 1 175325461 175325461 A - TNR Frame_Shift_Del p.S1038Lfs*10 0.18 TCGA-EW-A2FV-01 1 17603089 17603089 C - PADI3 Frame_Shift_Del p.F462Lfs*14 0.09 TCGA-EW-A2FV-01 1 17699575 17699575 C T PADI6 RNA 0.13 TCGA-EW-A2FV-01 1 176998868 176998868 G T ASTN1 Missense_Mutation p.A341D 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.699) TCGA-EW-A2FV-01 1 17720517 17720517 C - PADI6 RNA 0.08 TCGA-EW-A2FV-01 1 178421654 178421654 T - RASAL2 Frame_Shift_Del p.L627Sfs*29 0.09 TCGA-EW-A2FV-01 1 179041132 179041132 C - FAM20B Frame_Shift_Del p.I363Sfs*18 0.10 TCGA-EW-A2FV-01 1 179057173 179057173 C - TOR3A Frame_Shift_Del p.P257Lfs*23 0.10 TCGA-EW-A2FV-01 1 179959740 179959740 A - CEP350 Frame_Shift_Del p.I75* 0.11 TCGA-EW-A2FV-01 1 180044285 180044285 C - CEP350 Frame_Shift_Del p.W1900Gfs*5 0.11 TCGA-EW-A2FV-01 1 180056794 180056794 A - CEP350 Frame_Shift_Del p.T2124Rfs*29 0.10 TCGA-EW-A2FV-01 1 180056811 180056811 T - CEP350 Frame_Shift_Del p.S2129Lfs*24 0.12 TCGA-EW-A2FV-01 1 180885810 180885810 G A KIAA1614 Missense_Mutation p.E191K 0.11 deleterious(0.02) benign(0.121) TCGA-EW-A2FV-01 1 18153015 18153015 C - ACTL8 3'UTR 0.10 TCGA-EW-A2FV-01 1 182423148 182423148 T - RGSL1 Frame_Shift_Del p.F25Sfs*33 0.08 TCGA-EW-A2FV-01 1 185130045 185130045 T - SWT1 Frame_Shift_Del p.F25Lfs*21 0.09 TCGA-EW-A2FV-01 1 186315318 186315318 T - TPR Frame_Shift_Del p.K1015Nfs*12 0.08 TCGA-EW-A2FV-01 1 190067583 190067583 A - BRINP3 Frame_Shift_Del p.F622Lfs*8 0.09 TCGA-EW-A2FV-01 1 192778179 192778179 G - RGS2 5'UTR 0.15 TCGA-EW-A2FV-01 1 19426949 19426949 G - UBR4 Frame_Shift_Del p.P4381Rfs*2 0.09 TCGA-EW-A2FV-01 1 19479798 19479798 T - UBR4 Frame_Shift_Del p.I2277Sfs*9 0.08 TCGA-EW-A2FV-01 1 19519972 19519972 T - UBR4 Frame_Shift_Del p.E367Kfs*21 0.10 TCGA-EW-A2FV-01 1 196973811 196973811 C - CFHR5 Frame_Shift_Del p.P452Lfs*23 0.09 TCGA-EW-A2FV-01 1 200017797 200017797 A - NR5A2 Frame_Shift_Del p.I322Sfs*18 0.08 TCGA-EW-A2FV-01 1 200378175 200378175 T - ZNF281 Frame_Shift_Del p.K220Rfs*105 0.08 TCGA-EW-A2FV-01 1 200946433 200946433 C - KIF21B Frame_Shift_Del p.G1411Afs*39 0.10 TCGA-EW-A2FV-01 1 201285720 201285720 C - PKP1 Frame_Shift_Del p.K249Rfs*6 0.09 TCGA-EW-A2FV-01 1 201777190 201777190 C - NAV1 Frame_Shift_Del p.K1255Nfs*65 0.09 TCGA-EW-A2FV-01 1 202097416 202097416 C - GPR37L1 Frame_Shift_Del p.L394Wfs*162 0.10 TCGA-EW-A2FV-01 1 202287635 202287635 C - LGR6 Frame_Shift_Del p.L736Wfs*2 0.10 TCGA-EW-A2FV-01 1 202704673 202704673 T - KDM5B Frame_Shift_Del p.R1103Gfs*6 0.08 TCGA-EW-A2FV-01 1 202736122 202736122 G - KDM5B Frame_Shift_Del p.Q215Rfs*20 0.09 TCGA-EW-A2FV-01 1 203188439 203188439 C - CHIT1 Frame_Shift_Del p.A312Pfs*36 0.09 TCGA-EW-A2FV-01 1 203740527 203740527 C - LAX1 Frame_Shift_Del p.L79Cfs*2 0.08 TCGA-EW-A2FV-01 1 204082150 204082150 C - SOX13 Frame_Shift_Del p.Q38Rfs*71 0.12 TCGA-EW-A2FV-01 1 204396816 204396816 T - PIK3C2B Frame_Shift_Del p.N1516Tfs*8 0.10 TCGA-EW-A2FV-01 1 204966404 204966404 C - NFASC Frame_Shift_Del p.P964Qfs*101 0.13 TCGA-EW-A2FV-01 1 205130440 205130440 G - DSTYK Frame_Shift_Del p.R632Afs*70 0.10 TCGA-EW-A2FV-01 1 205180477 205180477 A - DSTYK Frame_Shift_Del p.C63Vfs*29 0.11 TCGA-EW-A2FV-01 1 205496923 205496923 T - CDK18 Frame_Shift_Del p.F275Sfs*22 0.09 TCGA-EW-A2FV-01 1 205628637 205628637 C - SLC45A3 Frame_Shift_Del p.A463Pfs*79 0.13 TCGA-EW-A2FV-01 1 205633612 205633612 C - SLC45A3 Splice_Site p.X58_splice 0.09 TCGA-EW-A2FV-01 1 205892282 205892282 T - SLC26A9 Frame_Shift_Del p.K567Nfs*11 0.08 TCGA-EW-A2FV-01 1 205904964 205904964 A - SLC26A9 Intron 0.09 TCGA-EW-A2FV-01 1 206317635 206317635 C - CTSE Frame_Shift_Del p.L21Ffs*33 0.08 TCGA-EW-A2FV-01 1 206757749 206757749 A - RASSF5 Frame_Shift_Del p.V242Cfs*3 0.15 TCGA-EW-A2FV-01 1 206769068 206769068 T - EIF2D Frame_Shift_Del p.K503Rfs*2 0.08 TCGA-EW-A2FV-01 1 20680403 20680403 C - VWA5B1 Frame_Shift_Del p.Q1105Sfs*? 0.12 TCGA-EW-A2FV-01 1 207107879 207107879 G - PIGR Frame_Shift_Del p.L531* 0.09 TCGA-EW-A2FV-01 1 207818641 207818641 G - CR1L Frame_Shift_Del p.A22Rfs*28 0.08 TCGA-EW-A2FV-01 1 207940413 207940413 A - CD46 Frame_Shift_Del p.K245Nfs*53 0.09 TCGA-EW-A2FV-01 1 208061166 208061166 C - CD34 Frame_Shift_Del p.A359Lfs*161 0.09 TCGA-EW-A2FV-01 1 209824263 209824263 A - LAMB3 Frame_Shift_Del p.F9Lfs*41 0.08 TCGA-EW-A2FV-01 1 20991183 20991183 G - KIF17 Frame_Shift_Del p.P995Lfs*46 0.11 TCGA-EW-A2FV-01 1 209956793 209956793 C - C1orf74 Frame_Shift_Del p.A63Hfs*11 0.10 TCGA-EW-A2FV-01 1 210267786 210267786 A - SYT14 Frame_Shift_Del p.K233Nfs*28 0.10 TCGA-EW-A2FV-01 1 211956718 211956718 T - LPGAT1 Frame_Shift_Del p.T194Qfs*29 0.08 TCGA-EW-A2FV-01 1 21212696 21212696 G - EIF4G3 Frame_Shift_Del p.Q758Rfs*11 0.09 TCGA-EW-A2FV-01 1 212506886 212506886 T - PPP2R5A Frame_Shift_Del p.F143Lfs*25 0.10 TCGA-EW-A2FV-01 1 216051172 216051172 G - USH2A Frame_Shift_Del p.P2870Qfs*4 0.09 TCGA-EW-A2FV-01 1 217975145 217975145 A - SPATA17 Frame_Shift_Del p.E321Nfs*49 0.08 TCGA-EW-A2FV-01 1 21880565 21880565 G - ALPL 5'UTR 0.08 TCGA-EW-A2FV-01 1 220355612 220355612 G - RAB3GAP2 Frame_Shift_Del p.P766Lfs*9 0.10 TCGA-EW-A2FV-01 1 220825449 220825449 A - MARK1 Frame_Shift_Del p.T565Hfs*88 0.10 TCGA-EW-A2FV-01 1 22169285 22169285 C - HSPG2 Frame_Shift_Del p.G2963Afs*142 0.18 TCGA-EW-A2FV-01 1 222696971 222696971 G - HHIPL2 Frame_Shift_Del p.P624Rfs*13 0.09 TCGA-EW-A2FV-01 1 222761816 222761816 A - TAF1A Frame_Shift_Del p.P31Lfs*7 0.08 TCGA-EW-A2FV-01 1 222802980 222802980 A - MIA3 Frame_Shift_Del p.N807Ifs*28 0.13 TCGA-EW-A2FV-01 1 222895763 222895763 C - BROX Frame_Shift_Del p.Q104Sfs*8 0.10 TCGA-EW-A2FV-01 1 223178325 223178325 C - DISP1 Frame_Shift_Del p.P1196Lfs*32 0.10 TCGA-EW-A2FV-01 1 225211543 225211543 A - DNAH14 Frame_Shift_Del p.K447Rfs*12 0.10 TCGA-EW-A2FV-01 1 226485455 226485455 A - LIN9 Frame_Shift_Del p.W58Gfs*31 0.08 TCGA-EW-A2FV-01 1 226736725 226736725 C - C1orf95 Frame_Shift_Del p.L42Cfs*54 0.10 TCGA-EW-A2FV-01 1 226829637 226829637 C - ITPKB Frame_Shift_Del p.I813Sfs*11 0.12 TCGA-EW-A2FV-01 1 227171259 227171259 G - ADCK3 Frame_Shift_Del p.G363Afs*17 0.08 TCGA-EW-A2FV-01 1 227300390 227300390 T - CDC42BPA Frame_Shift_Del p.E625Kfs*14 0.08 TCGA-EW-A2FV-01 1 228284858 228284858 A - ARF1 Frame_Shift_Del p.E17Kfs*27 0.10 TCGA-EW-A2FV-01 1 228346247 228346247 A - GJC2 Frame_Shift_Del p.K264Rfs*207 0.16 TCGA-EW-A2FV-01 1 228432236 228432236 G - OBSCN Frame_Shift_Del p.G1242Afs*37 0.09 TCGA-EW-A2FV-01 1 228475435 228475435 G - OBSCN Frame_Shift_Del p.V3625Cfs*20 0.09 TCGA-EW-A2FV-01 1 2290076 2290076 A - MORN1 Frame_Shift_Del p.F275Sfs*158 0.09 TCGA-EW-A2FV-01 1 229773923 229773923 C - URB2 Frame_Shift_Del p.P1189Qfs*18 0.08 TCGA-EW-A2FV-01 1 230486752 230486752 T - PGBD5 Frame_Shift_Del p.K213Nfs*22 0.09 TCGA-EW-A2FV-01 1 231700396 231700396 G - TSNAX Frame_Shift_Del p.N208Mfs*10 0.10 TCGA-EW-A2FV-01 1 23407987 23407987 A - KDM1A Frame_Shift_Del p.N741Tfs*2 0.09 TCGA-EW-A2FV-01 1 235331865 235331865 T - ARID4B Frame_Shift_Del p.N1305Mfs*14 0.11 TCGA-EW-A2FV-01 1 235993660 235993660 A - LYST Frame_Shift_Del p.C20Afs*39 0.11 TCGA-EW-A2FV-01 1 236208982 236208982 C - NID1 Frame_Shift_Del p.R176Kfs*8 0.13 TCGA-EW-A2FV-01 1 236341892 236341892 A - GPR137B Frame_Shift_Del p.I216Sfs*6 0.09 TCGA-EW-A2FV-01 1 236736035 236736035 T - HEATR1 Frame_Shift_Del p.M1185Cfs*9 0.10 TCGA-EW-A2FV-01 1 236759133 236759133 T - HEATR1 Frame_Shift_Del p.K319Sfs*61 0.09 TCGA-EW-A2FV-01 1 236762827 236762827 T - HEATR1 Frame_Shift_Del p.I153Lfs*21 0.08 TCGA-EW-A2FV-01 1 237886546 237886546 T - RYR2 Frame_Shift_Del p.H3560Ifs*41 0.09 TCGA-EW-A2FV-01 1 238046085 238046085 G - ZP4 Frame_Shift_Del p.M485* 0.10 TCGA-EW-A2FV-01 1 238050110 238050110 T - ZP4 Frame_Shift_Del p.N267Mfs*23 0.09 TCGA-EW-A2FV-01 1 23857121 23857121 G - E2F2 Frame_Shift_Del p.A56Qfs*90 0.13 TCGA-EW-A2FV-01 1 240256653 240256653 C - FMN2 Frame_Shift_Del p.C417Afs*35 0.14 TCGA-EW-A2FV-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.09 TCGA-EW-A2FV-01 1 241757850 241757850 T - OPN3 Frame_Shift_Del p.V364* 0.08 TCGA-EW-A2FV-01 1 241767641 241767641 A - OPN3 Frame_Shift_Del p.F205Sfs*14 0.08 TCGA-EW-A2FV-01 1 243362382 243362382 T - CEP170 Frame_Shift_Del p.N204Tfs*11 0.08 TCGA-EW-A2FV-01 1 24383915 24383915 C - MYOM3 Frame_Shift_Del p.G1418Afs*17 0.14 TCGA-EW-A2FV-01 1 244641256 244641256 A - C1orf101 Frame_Shift_Del p.K80Nfs*64 0.08 TCGA-EW-A2FV-01 1 24507235 24507235 A - IFNLR1 Frame_Shift_Del p.F56Lfs*29 0.09 TCGA-EW-A2FV-01 1 245180567 245180567 A - EFCAB2 Frame_Shift_Del p.I19Sfs*18 0.08 TCGA-EW-A2FV-01 1 245766063 245766063 T - KIF26B Frame_Shift_Del p.P514Hfs*17 0.09 TCGA-EW-A2FV-01 1 245770976 245770976 G - KIF26B Frame_Shift_Del p.A528Qfs*3 0.10 TCGA-EW-A2FV-01 1 247007131 247007131 T - AHCTF1 Frame_Shift_Del p.N2173Tfs*12 0.10 TCGA-EW-A2FV-01 1 247024413 247024413 T - AHCTF1 Frame_Shift_Del p.N1316Tfs*13 0.08 TCGA-EW-A2FV-01 1 247061510 247061510 T - AHCTF1 Frame_Shift_Del p.E551Kfs*4 0.12 TCGA-EW-A2FV-01 1 247473079 247473079 G - ZNF496 Frame_Shift_Del p.Q272Rfs*36 0.11 TCGA-EW-A2FV-01 1 248343350 248343350 C - OR2M2 Frame_Shift_Del p.P22Hfs*15 0.09 TCGA-EW-A2FV-01 1 248436337 248436337 G - OR2T33 Frame_Shift_Del p.K261Nfs*23 0.08 TCGA-EW-A2FV-01 1 249106395 249106395 C - SH3BP5L Frame_Shift_Del p.A296Qfs*38 0.11 TCGA-EW-A2FV-01 1 24981546 24981546 C - SRRM1 Frame_Shift_Del p.P415Lfs*25 0.09 TCGA-EW-A2FV-01 1 25167273 25167273 A - CLIC4 Frame_Shift_Del p.K204Nfs*11 0.10 TCGA-EW-A2FV-01 1 2535400 2535400 G - MMEL1 Frame_Shift_Del p.Q322Rfs*25 0.09 TCGA-EW-A2FV-01 1 25747185 25747185 A - RHCE Frame_Shift_Del p.F31Lfs*8 0.13 TCGA-EW-A2FV-01 1 26524547 26524547 C - CATSPER4 Frame_Shift_Del p.L220Sfs*14 0.10 TCGA-EW-A2FV-01 1 26623917 26623917 C - UBXN11 Splice_Site p.X119_splice 0.08 TCGA-EW-A2FV-01 1 26669277 26669277 G - AIM1L Frame_Shift_Del p.Q184Kfs*6 0.10 TCGA-EW-A2FV-01 1 26882044 26882044 C - RPS6KA1 Frame_Shift_Del p.Q292Sfs*3 0.18 TCGA-EW-A2FV-01 1 27087893 27087893 G - ARID1A Frame_Shift_Del p.P728Hfs*14 0.11 TCGA-EW-A2FV-01 1 27099103 27099103 C - ARID1A Frame_Shift_Del p.P1175Hfs*5 0.09 TCGA-EW-A2FV-01 1 27099426 27099426 G - ARID1A Frame_Shift_Del p.R1223Afs*14 0.09 TCGA-EW-A2FV-01 1 27721034 27721034 G - GPR3 Frame_Shift_Del p.G245Afs*47 0.09 TCGA-EW-A2FV-01 1 27876419 27876419 C - AHDC1 Frame_Shift_Del p.K737Sfs*195 0.15 TCGA-EW-A2FV-01 1 28167541 28167541 G - PPP1R8 Frame_Shift_Del p.G97Vfs*41 0.09 TCGA-EW-A2FV-01 1 28240947 28240947 T - RPA2 Frame_Shift_Del p.N3Tfs*92 0.09 TCGA-EW-A2FV-01 1 28864547 28864547 C - RCC1 3'UTR 0.13 TCGA-EW-A2FV-01 1 29010212 29010212 A - GMEB1 Frame_Shift_Del p.T31Pfs*3 0.09 TCGA-EW-A2FV-01 1 29064114 29064114 T - YTHDF2 Intron 0.10 TCGA-EW-A2FV-01 1 31769512 31769512 C - SNRNP40 Frame_Shift_Del p.S30Lfs*52 0.09 TCGA-EW-A2FV-01 1 32148967 32148967 C - COL16A1 Frame_Shift_Del p.E795Sfs*34 0.15 TCGA-EW-A2FV-01 1 32150230 32150230 C - COL16A1 Frame_Shift_Del p.G685Vfs*50 0.15 TCGA-EW-A2FV-01 1 32165465 32165465 T - COL16A1 Frame_Shift_Del p.K72Rfs*13 0.08 TCGA-EW-A2FV-01 1 32193198 32193198 G - BAI2 Frame_Shift_Del p.S1528Afs*23 0.10 TCGA-EW-A2FV-01 1 32203895 32203895 T - BAI2 Frame_Shift_Del p.N893Ifs*25 0.08 TCGA-EW-A2FV-01 1 32384650 32384650 G - PTP4A2 Frame_Shift_Del p.P6Lfs*12 0.12 TCGA-EW-A2FV-01 1 32670900 32670900 T - CCDC28B 3'UTR 0.21 TCGA-EW-A2FV-01 1 32677392 32677392 G - DCDC2B Frame_Shift_Del p.A118Pfs*23 0.08 TCGA-EW-A2FV-01 1 32936289 32936289 T - ZBTB8B Frame_Shift_Del p.F23Sfs*58 0.11 TCGA-EW-A2FV-01 1 33233530 33233530 G - KIAA1522 Frame_Shift_Del p.E127Rfs*14 0.11 TCGA-EW-A2FV-01 1 33354711 33354711 C - HPCA Frame_Shift_Del p.F72Lfs*9 0.10 TCGA-EW-A2FV-01 1 33985178 33985178 G - CSMD2 Frame_Shift_Del p.T3469Qfs*48 0.10 TCGA-EW-A2FV-01 1 33988917 33988917 A - CSMD2 Frame_Shift_Del p.L3356* 0.09 TCGA-EW-A2FV-01 1 34066477 34066477 T - CSMD2 Frame_Shift_Del p.I2284* 0.08 TCGA-EW-A2FV-01 1 34080105 34080105 A - CSMD2 Frame_Shift_Del p.F2004Lfs*8 0.08 TCGA-EW-A2FV-01 1 3410404 3410404 C - MEGF6 Frame_Shift_Del p.A1440Hfs*78 0.11 TCGA-EW-A2FV-01 1 3415384 3415384 G - MEGF6 Frame_Shift_Del p.P1034Lfs*240 0.25 TCGA-EW-A2FV-01 1 34677866 34677866 C - C1orf94 Frame_Shift_Del p.P528Lfs*3 0.08 TCGA-EW-A2FV-01 1 35227621 35227621 G - GJB4 Frame_Shift_Del p.S257Rfs*44 0.19 TCGA-EW-A2FV-01 1 35453175 35453175 A - ZMYM6 Frame_Shift_Del p.S1170Lfs*9 0.10 TCGA-EW-A2FV-01 1 35457848 35457848 T - ZMYM6 Frame_Shift_Del p.E712Nfs*27 0.10 TCGA-EW-A2FV-01 1 35478095 35478095 T - ZMYM6 Frame_Shift_Del p.T295Qfs*40 0.08 TCGA-EW-A2FV-01 1 35824979 35824979 A - ZMYM4 Frame_Shift_Del p.K181Nfs*14 0.09 TCGA-EW-A2FV-01 1 35921696 35921696 T - KIAA0319L Frame_Shift_Del p.N525Tfs*51 0.09 TCGA-EW-A2FV-01 1 36028046 36028046 G - NCDN Frame_Shift_Del p.G400Vfs*72 0.08 TCGA-EW-A2FV-01 1 36229886 36229886 T - CLSPN Frame_Shift_Del p.K188Rfs*11 0.09 TCGA-EW-A2FV-01 1 36479611 36479611 T - AGO3 Frame_Shift_Del p.F457Lfs*12 0.11 TCGA-EW-A2FV-01 1 36645294 36645294 C - MAP7D1 Frame_Shift_Del p.P754Qfs*32 0.12 TCGA-EW-A2FV-01 1 36820013 36820013 T - STK40 Frame_Shift_Del p.N192Ifs*7 0.08 TCGA-EW-A2FV-01 1 37291232 37291232 C - GRIK3 Frame_Shift_Del p.V576Sfs*46 0.12 TCGA-EW-A2FV-01 1 38186475 38186475 C - EPHA10 Frame_Shift_Del p.A730Pfs*18 0.10 TCGA-EW-A2FV-01 1 38301392 38301392 T - MTF1 Frame_Shift_Del p.A269Hfs*42 0.08 TCGA-EW-A2FV-01 1 38464977 38464977 A - FHL3 Frame_Shift_Del p.F36Lfs*40 0.10 TCGA-EW-A2FV-01 1 39500113 39500113 A - NDUFS5 Frame_Shift_Del p.G90Efs*23 0.13 TCGA-EW-A2FV-01 1 39806582 39806582 A - MACF1 Intron 0.12 TCGA-EW-A2FV-01 1 40235958 40235958 G - OXCT2 Frame_Shift_Del p.L324Cfs*11 0.09 TCGA-EW-A2FV-01 1 40307544 40307544 T - TRIT1 Frame_Shift_Del p.R426Efs*12 0.08 TCGA-EW-A2FV-01 1 40654811 40654811 T - RLF Frame_Shift_Del p.F108Lfs*8 0.10 TCGA-EW-A2FV-01 1 40724019 40724019 T - ZMPSTE24 Frame_Shift_Del p.S27Pfs*11 0.13 TCGA-EW-A2FV-01 1 40776771 40776771 C - COL9A2 Frame_Shift_Del p.K209Sfs*109 0.09 TCGA-EW-A2FV-01 1 41094978 41094978 C - RIMS3 Frame_Shift_Del p.G180Afs*2 0.09 TCGA-EW-A2FV-01 1 41503112 41503112 G - SCMH1 Frame_Shift_Del p.Q524Kfs*29 0.09 TCGA-EW-A2FV-01 1 41608743 41608743 T - SCMH1 Frame_Shift_Del p.K63Nfs*18 0.08 TCGA-EW-A2FV-01 1 43124107 43124107 G - PPIH 5'UTR 0.09 TCGA-EW-A2FV-01 1 43395333 43395333 G - SLC2A1 Frame_Shift_Del p.A267Pfs*73 0.09 TCGA-EW-A2FV-01 1 43675670 43675670 T - WDR65 Frame_Shift_Del p.F672Sfs*15 0.09 TCGA-EW-A2FV-01 1 43766772 43766772 C - TIE1 Frame_Shift_Del p.I12Sfs*14 0.09 TCGA-EW-A2FV-01 1 43787343 43787343 C - TIE1 Frame_Shift_Del p.Q1102Rfs*6 0.10 TCGA-EW-A2FV-01 1 43869358 43869358 C - SZT2 Frame_Shift_Del p.L81Wfs*49 0.09 TCGA-EW-A2FV-01 1 43894060 43894060 C - SZT2 Frame_Shift_Del p.P1301Qfs*27 0.08 TCGA-EW-A2FV-01 1 43909308 43909308 C - SZT2 Frame_Shift_Del p.T2834Qfs*19 0.12 TCGA-EW-A2FV-01 1 43914135 43914135 G - SZT2 Frame_Shift_Del p.D3261Tfs*12 0.09 TCGA-EW-A2FV-01 1 43916019 43916019 G - SZT2 Frame_Shift_Del p.V3333Ffs*82 0.09 TCGA-EW-A2FV-01 1 43916115 43916115 C - SZT2 Frame_Shift_Del p.N3364Kfs*51 0.11 TCGA-EW-A2FV-01 1 44035272 44035272 C - PTPRF Frame_Shift_Del p.P132Lfs*12 0.08 TCGA-EW-A2FV-01 1 44476400 44476400 C - SLC6A9 Frame_Shift_Del p.G135Efs*51 0.10 TCGA-EW-A2FV-01 1 45478810 45478810 T - UROD Frame_Shift_Del p.F46Lfs*23 0.09 TCGA-EW-A2FV-01 1 45965029 45965029 C - CCDC163P Frame_Shift_Del p.S56Lfs*25 0.08 TCGA-EW-A2FV-01 1 46521525 46521525 T - PIK3R3 Frame_Shift_Del p.M295* 0.12 TCGA-EW-A2FV-01 1 46726984 46726984 T - RAD54L Frame_Shift_Del p.S274Pfs*42 0.08 TCGA-EW-A2FV-01 1 47075307 47075307 A - MOB3C 3'UTR 0.09 TCGA-EW-A2FV-01 1 47123819 47123819 T - ATPAF1 Frame_Shift_Del p.T180Lfs*5 0.10 TCGA-EW-A2FV-01 1 47276567 47276567 G - CYP4B1 Frame_Shift_Del p.G90Afs*3 0.08 TCGA-EW-A2FV-01 1 47351238 47351238 G - CYP4Z2P RNA 0.08 TCGA-EW-A2FV-01 1 47398489 47398489 A - CYP4A11 Frame_Shift_Del p.F436Lfs*29 0.08 TCGA-EW-A2FV-01 1 52747405 52747405 T - ZFYVE9 Frame_Shift_Del p.L982Yfs*31 0.08 TCGA-EW-A2FV-01 1 52933901 52933901 C - ZCCHC11 Frame_Shift_Del p.E973Sfs*4 0.07 TCGA-EW-A2FV-01 1 52947179 52947179 T - ZCCHC11 Frame_Shift_Del p.A589Lfs*22 0.08 TCGA-EW-A2FV-01 1 53108576 53108576 T - FAM159A Frame_Shift_Del p.L76Sfs*27 0.09 TCGA-EW-A2FV-01 1 53580365 53580365 G - SLC1A7 Intron 0.20 TCGA-EW-A2FV-01 1 55096465 55096465 G - ACOT11 Frame_Shift_Del p.L565Sfs*17 0.21 TCGA-EW-A2FV-01 1 55134582 55134582 A - MROH7 Frame_Shift_Del p.K455Rfs*4 0.14 TCGA-EW-A2FV-01 1 59127095 59127095 T - MYSM1 Frame_Shift_Del p.K751Nfs*21 0.10 TCGA-EW-A2FV-01 1 59139253 59139253 T - MYSM1 Frame_Shift_Del p.T522Rfs*25 0.09 TCGA-EW-A2FV-01 1 59156071 59156071 T - MYSM1 Frame_Shift_Del p.K79Nfs*19 0.09 TCGA-EW-A2FV-01 1 5923362 5923362 T - NPHP4 Frame_Shift_Del p.N1415Tfs*7 0.08 TCGA-EW-A2FV-01 1 5951063 5951063 G - NPHP4 Frame_Shift_Del p.Y723* 0.09 TCGA-EW-A2FV-01 1 60306020 60306020 A - HOOK1 Frame_Shift_Del p.E195Kfs*3 0.08 TCGA-EW-A2FV-01 1 60370602 60370602 G - CYP2J2 Frame_Shift_Del p.L378* 0.13 TCGA-EW-A2FV-01 1 61548418 61548418 A - NFIA Intron 0.10 TCGA-EW-A2FV-01 1 6158463 6158463 G - KCNAB2 Intron 0.10 TCGA-EW-A2FV-01 1 6158475 6158475 C - KCNAB2 Intron 0.09 TCGA-EW-A2FV-01 1 6181294 6181294 G - CHD5 Frame_Shift_Del p.L1595Ffs*59 0.11 TCGA-EW-A2FV-01 1 6219439 6219439 T - CHD5 Frame_Shift_Del p.K115Rfs*14 0.09 TCGA-EW-A2FV-01 1 6646785 6646785 T - ZBTB48 Frame_Shift_Del p.F359Sfs*39 0.11 TCGA-EW-A2FV-01 1 6659301 6659301 G - KLHL21 Frame_Shift_Del p.M412Wfs*26 0.14 TCGA-EW-A2FV-01 1 67299329 67299329 T - WDR78 Frame_Shift_Del p.K651Rfs*6 0.12 TCGA-EW-A2FV-01 1 67591544 67591544 G - C1orf141 Frame_Shift_Del p.L42* 0.09 TCGA-EW-A2FV-01 1 70621373 70621373 T - LRRC40 Frame_Shift_Del p.R443Gfs*3 0.08 TCGA-EW-A2FV-01 1 70654843 70654843 T - LRRC40 Frame_Shift_Del p.I89Yfs*19 0.09 TCGA-EW-A2FV-01 1 75672263 75672263 A - SLC44A5 3'UTR 0.08 TCGA-EW-A2FV-01 1 7887506 7887506 G - PER3 Frame_Shift_Del p.G832Afs*17 0.09 TCGA-EW-A2FV-01 1 7907893 7907893 A - UTS2 Frame_Shift_Del p.L118Wfs*? 0.08 TCGA-EW-A2FV-01 1 79357234 79357234 A - ELTD1 Frame_Shift_Del p.L662Yfs*28 0.10 TCGA-EW-A2FV-01 1 7998310 7998310 C - TNFRSF9 Frame_Shift_Del p.A97Qfs*16 0.09 TCGA-EW-A2FV-01 1 86173757 86173757 T - ZNHIT6 Frame_Shift_Del p.I71Yfs*5 0.08 TCGA-EW-A2FV-01 1 86200530 86200530 T - COL24A1 Frame_Shift_Del p.S1634Vfs*19 0.09 TCGA-EW-A2FV-01 1 86842018 86842018 C - ODF2L Frame_Shift_Del p.R236Sfs*5 0.08 TCGA-EW-A2FV-01 1 880463 880463 C - NOC2L Frame_Shift_Del p.G706Afs*53 0.10 TCGA-EW-A2FV-01 1 89353016 89353016 G - GTF2B Frame_Shift_Del p.H18Ifs*6 0.08 TCGA-EW-A2FV-01 1 89662848 89662848 C - GBP4 Frame_Shift_Del p.L61Yfs*10 0.10 TCGA-EW-A2FV-01 1 90399038 90399038 A - LRRC8D Frame_Shift_Del p.T139Qfs*30 0.09 TCGA-EW-A2FV-01 1 9117600 9117600 A - SLC2A5 Frame_Shift_Del p.L67* 0.11 TCGA-EW-A2FV-01 1 91967285 91967285 T - CDC7 Frame_Shift_Del p.L5Wfs*24 0.08 TCGA-EW-A2FV-01 1 92712691 92712691 T - GLMN Frame_Shift_Del p.K532Nfs*8 0.09 TCGA-EW-A2FV-01 1 9416569 9416569 A - SPSB1 Frame_Shift_Del p.K208Nfs*5 0.08 TCGA-EW-A2FV-01 1 94362333 94362333 A - GCLM Frame_Shift_Del p.I127Mfs*24 0.10 TCGA-EW-A2FV-01 1 94645354 94645354 T - ARHGAP29 Frame_Shift_Del p.S803Afs*5 0.09 TCGA-EW-A2FV-01 1 94697170 94697170 T - ARHGAP29 5'UTR 0.08 TCGA-EW-A2FV-01 1 95286544 95286544 C - SLC44A3 Frame_Shift_Del p.Q24Rfs*66 0.08 TCGA-EW-A2FV-01 1 9777114 9777114 C - PIK3CD Frame_Shift_Del p.Q295Rfs*39 0.09 TCGA-EW-A2FV-01 1 9781908 9781908 T - PIK3CD Frame_Shift_Del p.L682Rfs*2 0.11 TCGA-EW-A2FV-01 1 97839133 97839133 C - DPYD Frame_Shift_Del p.G681Afs*30 0.09 TCGA-EW-A2FV-01 1 9784030 9784030 G - PIK3CD Frame_Shift_Del p.A867Pfs*34 0.08 TCGA-EW-A2FV-01 1 981405 981405 G - AGRN Frame_Shift_Del p.E915Sfs*36 0.10 TCGA-EW-A2FV-01 1 982277 982277 T - AGRN Frame_Shift_Del p.L1110Wfs*128 0.14 TCGA-EW-A2FV-01 1 983028 983028 A - AGRN Frame_Shift_Del p.K1198Nfs*40 0.08 TCGA-EW-A2FV-01 1 989884 989884 C - AGRN Frame_Shift_Del p.P1979Rfs*84 0.10 TCGA-EW-A2FV-01 1 99358582 99358582 A - LPPR5 3'UTR 0.08 TCGA-EW-A2FV-01 20 10620219 10620219 T - JAG1 Frame_Shift_Del p.N1195Tfs*17 0.08 TCGA-EW-A2FV-01 20 10629267 10629267 C - JAG1 Frame_Shift_Del p.G500Vfs*64 0.13 TCGA-EW-A2FV-01 20 13463904 13463904 G - TASP1 Frame_Shift_Del p.L319Cfs*25 0.12 TCGA-EW-A2FV-01 20 13756567 13756567 A - ESF1 Frame_Shift_Del p.F329Lfs*8 0.08 TCGA-EW-A2FV-01 20 1472030 1472030 T - SIRPB2 5'UTR 0.14 TCGA-EW-A2FV-01 20 15948227 15948227 G - MACROD2 Frame_Shift_Del p.G313Afs*4 0.11 TCGA-EW-A2FV-01 20 17601434 17601434 G - RRBP1 Frame_Shift_Del p.L712Cfs*30 0.09 TCGA-EW-A2FV-01 20 17640734 17640734 T - RRBP1 Frame_Shift_Del p.K140Rfs*17 0.08 TCGA-EW-A2FV-01 20 18125917 18125917 T - CSRP2BP Frame_Shift_Del p.F102Lfs*19 0.08 TCGA-EW-A2FV-01 20 18163816 18163816 C T CSRP2BP Missense_Mutation p.R620C 0.20 tolerated(0.18) benign(0.001) TCGA-EW-A2FV-01 20 18424034 18424034 G - DZANK1 Frame_Shift_Del p.P235Hfs*28 0.10 TCGA-EW-A2FV-01 20 18491533 18491533 T - SEC23B Frame_Shift_Del p.F19Lfs*27 0.09 TCGA-EW-A2FV-01 20 20056252 20056252 A - C20orf26 Frame_Shift_Del p.A188Pfs*20 0.08 TCGA-EW-A2FV-01 20 23016915 23016915 G - SSTR4 Frame_Shift_Del p.V266Sfs*16 0.09 TCGA-EW-A2FV-01 20 23016946 23016946 T - SSTR4 Frame_Shift_Del p.Y276Tfs*6 0.09 TCGA-EW-A2FV-01 20 23669477 23669477 C - CST4 Frame_Shift_Del p.V44Yfs*38 0.09 TCGA-EW-A2FV-01 20 23858151 23858151 T - CST5 Frame_Shift_Del p.K112Nfs*2 0.10 TCGA-EW-A2FV-01 20 23967224 23967224 G - GGTLC1 Frame_Shift_Del p.Q9Sfs*143 0.11 TCGA-EW-A2FV-01 20 2413186 2413186 C - TGM6 Frame_Shift_Del p.S675Pfs*13 0.08 TCGA-EW-A2FV-01 20 2464357 2464357 C - ZNF343 Frame_Shift_Del p.G417Afs*194 0.08 TCGA-EW-A2FV-01 20 24988464 24988464 G - ACSS1 Frame_Shift_Del p.S669Afs*7 0.12 TCGA-EW-A2FV-01 20 2539369 2539369 A - TMC2 Frame_Shift_Del p.K118Rfs*64 0.20 TCGA-EW-A2FV-01 20 2593917 2593917 T - TMC2 Frame_Shift_Del p.F608Lfs*5 0.10 TCGA-EW-A2FV-01 20 2636302 2636302 T - NOP56 Frame_Shift_Del p.L274Yfs*16 0.09 TCGA-EW-A2FV-01 20 2777267 2777267 G - CPXM1 Frame_Shift_Del p.N318Tfs*15 0.09 TCGA-EW-A2FV-01 20 2816123 2816123 C - PCED1A Frame_Shift_Del p.T451Hfs*? 0.12 TCGA-EW-A2FV-01 20 29891127 29891127 T - DEFB116 Frame_Shift_Del p.K66Sfs*4 0.10 TCGA-EW-A2FV-01 20 29965182 29965182 T - DEFB118 3'Flank 0.13 TCGA-EW-A2FV-01 20 30132766 30132766 T - HM13 Frame_Shift_Del p.P130Qfs*39 0.09 TCGA-EW-A2FV-01 20 3025140 3025140 C - GNRH2 Frame_Shift_Del p.H28Mfs*77 0.09 TCGA-EW-A2FV-01 20 30354462 30354462 A - TPX2 Frame_Shift_Del p.T113Lfs*26 0.09 TCGA-EW-A2FV-01 20 30363770 30363770 A - TPX2 Frame_Shift_Del p.K237Nfs*7 0.09 TCGA-EW-A2FV-01 20 30365289 30365289 G - TPX2 Splice_Site p.X244_splice 0.12 TCGA-EW-A2FV-01 20 31315937 31315937 G - COMMD7 Frame_Shift_Del p.L33* 0.10 TCGA-EW-A2FV-01 20 31376814 31376814 C - DNMT3B Frame_Shift_Del p.E271Rfs*59 0.08 TCGA-EW-A2FV-01 20 31434423 31434423 G - MAPRE1 Splice_Site p.X200_splice 0.09 TCGA-EW-A2FV-01 20 31463820 31463820 G - EFCAB8 Frame_Shift_Del p.D100Tfs*17 0.10 TCGA-EW-A2FV-01 20 31573599 31573599 G - SUN5 Frame_Shift_Del p.K281Rfs*60 0.10 TCGA-EW-A2FV-01 20 31647779 31647779 C - BPIFB3 Frame_Shift_Del p.I158Sfs*52 0.14 TCGA-EW-A2FV-01 20 31699312 31699312 A - BPIFB4 3'UTR 0.14 TCGA-EW-A2FV-01 20 31984785 31984785 A - CDK5RAP1 Frame_Shift_Del p.M29Sfs*41 0.10 TCGA-EW-A2FV-01 20 32266110 32266110 G - E2F1 Frame_Shift_Del p.Q208Rfs*16 0.10 TCGA-EW-A2FV-01 20 3235898 3235898 C - C20orf194 Frame_Shift_Del p.M1099Cfs*2 0.09 TCGA-EW-A2FV-01 20 33298112 33298112 G - TP53INP2 3'UTR 0.08 TCGA-EW-A2FV-01 20 33337224 33337224 T - NCOA6 Frame_Shift_Del p.N925Ifs*6 0.08 TCGA-EW-A2FV-01 20 33442378 33442378 G - GGT7 Frame_Shift_Del p.V426Sfs*42 0.09 TCGA-EW-A2FV-01 20 33529542 33529542 T - GSS Frame_Shift_Del p.A195Pfs*14 0.13 TCGA-EW-A2FV-01 20 33591419 33591419 C - TRPC4AP Frame_Shift_Del p.E684Rfs*11 0.16 TCGA-EW-A2FV-01 20 33637756 33637756 A - TRPC4AP Frame_Shift_Del p.F190Lfs*2 0.08 TCGA-EW-A2FV-01 20 33981972 33981972 C - UQCC1 Frame_Shift_Del p.V18Ffs*7 0.11 TCGA-EW-A2FV-01 20 34022504 34022504 C - GDF5 Frame_Shift_Del p.A237Pfs*27 0.11 TCGA-EW-A2FV-01 20 34091790 34091790 A - CEP250 Frame_Shift_Del p.K1865Rfs*28 0.12 TCGA-EW-A2FV-01 20 34214231 34214231 G - CPNE1 Frame_Shift_Del p.Q521Rfs*59 0.09 TCGA-EW-A2FV-01 20 34242664 34242664 G - RBM12 Frame_Shift_Del p.P194Qfs*42 0.09 TCGA-EW-A2FV-01 20 34501175 34501175 A - PHF20 Frame_Shift_Del p.D524Tfs*14 0.08 TCGA-EW-A2FV-01 20 34501194 34501194 A - PHF20 Frame_Shift_Del p.E530Rfs*8 0.11 TCGA-EW-A2FV-01 20 34766563 34766563 C - EPB41L1 Frame_Shift_Del p.S155Pfs*29 0.09 TCGA-EW-A2FV-01 20 34797526 34797526 G - EPB41L1 Frame_Shift_Del p.D596Tfs*100 0.09 TCGA-EW-A2FV-01 20 35434276 35434276 C - SOGA1 Frame_Shift_Del p.D967Tfs*18 0.08 TCGA-EW-A2FV-01 20 35444443 35444443 C - SOGA1 Frame_Shift_Del p.E468Rfs*14 0.09 TCGA-EW-A2FV-01 20 35521353 35521353 A - SAMHD1 Frame_Shift_Del p.F621Lfs*10 0.08 TCGA-EW-A2FV-01 20 36150798 36150798 T - NNAT Frame_Shift_Del p.R39Efs*93 0.15 TCGA-EW-A2FV-01 20 3627521 3627521 A - ATRN 3'UTR 0.14 TCGA-EW-A2FV-01 20 37001766 37001766 C - LBP Frame_Shift_Del p.K439Sfs*15 0.09 TCGA-EW-A2FV-01 20 3765445 3765445 G - CENPB Frame_Shift_Del p.I563Lfs*19 0.10 TCGA-EW-A2FV-01 20 3842963 3842963 C - MAVS Frame_Shift_Del p.L178Wfs*13 0.14 TCGA-EW-A2FV-01 20 3846419 3846419 G - MAVS Frame_Shift_Del p.E417Sfs*2 0.15 TCGA-EW-A2FV-01 20 39831824 39831824 G - ZHX3 Frame_Shift_Del p.P578Hfs*8 0.08 TCGA-EW-A2FV-01 20 398377 398377 T - RBCK1 Frame_Shift_Del p.L90Wfs*13 0.11 TCGA-EW-A2FV-01 20 39976240 39976240 G - LPIN3 Frame_Shift_Del p.D82Tfs*99 0.12 TCGA-EW-A2FV-01 20 4158147 4158147 G A SMOX Missense_Mutation p.V120M 0.13 deleterious(0.05) probably_damaging(0.982) TCGA-EW-A2FV-01 20 417398 417398 C - TBC1D20 3'UTR 0.14 TCGA-EW-A2FV-01 20 42213515 42213515 T - SGK2 Frame_Shift_Del p.F382Lfs*75 0.17 TCGA-EW-A2FV-01 20 43384757 43384757 C - RIMS4 3'UTR 0.14 TCGA-EW-A2FV-01 20 43577504 43577504 C - TOMM34 Frame_Shift_Del p.D189Mfs*8 0.09 TCGA-EW-A2FV-01 20 44352618 44352618 C - SPINT4 Frame_Shift_Del p.G73Afs*13 0.12 TCGA-EW-A2FV-01 20 44521062 44521062 C - CTSA Frame_Shift_Del p.P147Qfs*46 0.08 TCGA-EW-A2FV-01 20 44579097 44579097 C - ZNF335 Frame_Shift_Del p.Q1110Sfs*42 0.08 TCGA-EW-A2FV-01 20 44641176 44641176 C - MMP9 Frame_Shift_Del p.L431Cfs*6 0.14 TCGA-EW-A2FV-01 20 44750490 44750490 A - CD40 Frame_Shift_Del p.K29Nfs*4 0.09 TCGA-EW-A2FV-01 20 45130392 45130392 T - ZNF334 Frame_Shift_Del p.N529Tfs*31 0.09 TCGA-EW-A2FV-01 20 45839523 45839523 T - ZMYND8 Frame_Shift_Del p.K1150Nfs*? 0.09 TCGA-EW-A2FV-01 20 45891118 45891118 T - ZMYND8 Frame_Shift_Del p.K512Sfs*25 0.08 TCGA-EW-A2FV-01 20 46252693 46252693 A - NCOA3 Frame_Shift_Del p.S42Vfs*10 0.09 TCGA-EW-A2FV-01 20 46313301 46313301 G - SULF2 Frame_Shift_Del p.N255Tfs*14 0.09 TCGA-EW-A2FV-01 20 47307561 47307561 A - PREX1 Frame_Shift_Del p.F370Lfs*28 0.08 TCGA-EW-A2FV-01 20 47570135 47570135 C - ARFGEF2 Frame_Shift_Del p.Q217Sfs*4 0.08 TCGA-EW-A2FV-01 20 47865931 47865931 A - ZNFX1 Frame_Shift_Del p.L1211Cfs*46 0.10 TCGA-EW-A2FV-01 20 49510819 49510819 T - ADNP Frame_Shift_Del p.D145Ifs*16 0.08 TCGA-EW-A2FV-01 20 50226683 50226683 A - ATP9A Frame_Shift_Del p.Y865Tfs*61 0.08 TCGA-EW-A2FV-01 20 50286562 50286562 T - ATP9A Frame_Shift_Del p.S423Afs*30 0.09 TCGA-EW-A2FV-01 20 52198642 52198642 T - ZNF217 Frame_Shift_Del p.T242Lfs*30 0.10 TCGA-EW-A2FV-01 20 53227051 53227051 A - DOK5 Frame_Shift_Del p.N243Tfs*6 0.08 TCGA-EW-A2FV-01 20 54824616 54824616 G - MC3R Frame_Shift_Del p.A241Qfs*80 0.09 TCGA-EW-A2FV-01 20 56089700 56089700 G - CTCFL Frame_Shift_Del p.K427Nfs*32 0.10 TCGA-EW-A2FV-01 20 58571066 58571066 G - CDH26 Frame_Shift_Del p.A617Pfs*117 0.09 TCGA-EW-A2FV-01 20 6022554 6022554 A - LRRN4 Frame_Shift_Del p.F446Sfs*49 0.12 TCGA-EW-A2FV-01 20 60572646 60572646 T - TAF4 Frame_Shift_Del p.K1017Rfs*51 0.09 TCGA-EW-A2FV-01 20 6077564 6077564 T - FERMT1 Frame_Shift_Del p.A359Rfs*43 0.08 TCGA-EW-A2FV-01 20 60895879 60895879 A - LAMA5 Frame_Shift_Del p.H2189Tfs*20 0.11 TCGA-EW-A2FV-01 20 60902977 60902977 T - LAMA5 Frame_Shift_Del p.E1581Gfs*76 0.09 TCGA-EW-A2FV-01 20 60971370 60971370 C - CABLES2 Splice_Site p.X176_splice 0.09 TCGA-EW-A2FV-01 20 61538560 61538560 T - DIDO1 Frame_Shift_Del p.K438Sfs*6 0.08 TCGA-EW-A2FV-01 20 62120495 62120495 A - EEF1A2 Frame_Shift_Del p.L347Rfs*29 0.09 TCGA-EW-A2FV-01 20 62172872 62172872 C - SRMS Frame_Shift_Del p.D350Tfs*81 0.26 TCGA-EW-A2FV-01 20 62191612 62191612 G - HELZ2 Frame_Shift_Del p.Y2524Tfs*38 0.10 TCGA-EW-A2FV-01 20 62200668 62200668 C - HELZ2 Frame_Shift_Del p.T308Rfs*7 0.17 TCGA-EW-A2FV-01 20 62319293 62319293 T - RTEL1 Frame_Shift_Del p.F520Sfs*30 0.16 TCGA-EW-A2FV-01 20 62319393 62319393 T - RTEL1 Frame_Shift_Del p.F553Lfs*29 0.15 TCGA-EW-A2FV-01 20 62328710 62328710 C - TNFRSF6B Frame_Shift_Del p.P152Rfs*104 0.13 TCGA-EW-A2FV-01 20 62848541 62848541 T - MYT1 Frame_Shift_Del p.F585Lfs*50 0.10 TCGA-EW-A2FV-01 20 629393 629393 C - SRXN1 Frame_Shift_Del p.V127Cfs*40 0.10 TCGA-EW-A2FV-01 20 6750857 6750857 G - BMP2 Frame_Shift_Del p.G29Afs*22 0.13 TCGA-EW-A2FV-01 20 8637854 8637854 T - PLCB1 Frame_Shift_Del p.F207Sfs*39 0.12 TCGA-EW-A2FV-01 20 870931 870931 G - ANGPT4 Frame_Shift_Del p.M131Cfs*2 0.09 TCGA-EW-A2FV-01 21 18966511 18966511 T - BTG3 Frame_Shift_Del p.N264Ifs*9 0.08 TCGA-EW-A2FV-01 21 27107224 27107224 C - ATP5J Intron 0.11 TCGA-EW-A2FV-01 21 27394269 27394269 C - APP Frame_Shift_Del p.G251Vfs*4 0.10 TCGA-EW-A2FV-01 21 30415906 30415906 A - USP16 Frame_Shift_Del p.K449Sfs*19 0.11 TCGA-EW-A2FV-01 21 33065673 33065673 C - SCAF4 Frame_Shift_Del p.D483Ifs*16 0.08 TCGA-EW-A2FV-01 21 34022604 34022604 T - SYNJ1 Frame_Shift_Del p.N1015Ifs*6 0.09 TCGA-EW-A2FV-01 21 34120877 34120877 C - PAXBP1 Frame_Shift_Del p.G619Afs*53 0.10 TCGA-EW-A2FV-01 21 34127592 34127592 T - PAXBP1 Frame_Shift_Del p.R486Dfs*21 0.12 TCGA-EW-A2FV-01 21 34652203 34652203 A - IL10RB Frame_Shift_Del p.N161Tfs*106 0.09 TCGA-EW-A2FV-01 21 34655403 34655403 A - IL10RB Frame_Shift_Del p.I169Lfs*98 0.09 TCGA-EW-A2FV-01 21 34832739 34832739 A - TMEM50B Frame_Shift_Del p.F118Lfs*15 0.10 TCGA-EW-A2FV-01 21 34923446 34923446 G - SON Frame_Shift_Del p.A638Rfs*22 0.10 TCGA-EW-A2FV-01 21 34931656 34931656 C - SON Frame_Shift_Del p.K2149Nfs*7 0.10 TCGA-EW-A2FV-01 21 37518414 37518414 T - CBR3 Frame_Shift_Del p.F147Lfs*26 0.10 TCGA-EW-A2FV-01 21 37617667 37617667 C - DOPEY2 Frame_Shift_Del p.P1131Lfs*8 0.13 TCGA-EW-A2FV-01 21 38269369 38269369 T - HLCS Frame_Shift_Del p.K414Nfs*17 0.10 TCGA-EW-A2FV-01 21 38311192 38311192 C - HLCS 5'UTR 0.08 TCGA-EW-A2FV-01 21 40763721 40763721 A - WRB Frame_Shift_Del p.K99Rfs*2 0.10 TCGA-EW-A2FV-01 21 41516489 41516489 A - DSCAM Frame_Shift_Del p.V1063Gfs*36 0.11 TCGA-EW-A2FV-01 21 42823128 42823128 A - MX1 Frame_Shift_Del p.N491Ifs*30 0.08 TCGA-EW-A2FV-01 21 42870053 42870053 A - TMPRSS2 Frame_Shift_Del p.L40* 0.08 TCGA-EW-A2FV-01 21 43256245 43256245 A - PRDM15 Frame_Shift_Del p.S785Pfs*98 0.09 TCGA-EW-A2FV-01 21 43259796 43259796 C - PRDM15 Frame_Shift_Del p.R636Efs*12 0.14 TCGA-EW-A2FV-01 21 43414125 43414125 C - ZBTB21 Frame_Shift_Del p.G27Dfs*8 0.08 TCGA-EW-A2FV-01 21 43539302 43539302 G - UMODL1 Frame_Shift_Del p.G981Afs*10 0.11 TCGA-EW-A2FV-01 21 44282426 44282426 G - WDR4 Frame_Shift_Del p.H178Ifs*14 0.10 TCGA-EW-A2FV-01 21 44589230 44589230 C - CRYAA Frame_Shift_Del p.W9Gfs*69 0.10 TCGA-EW-A2FV-01 21 45103243 45103243 C - RRP1B Frame_Shift_Del p.L295Ffs*16 0.08 TCGA-EW-A2FV-01 21 45401061 45401061 G - AGPAT3 Frame_Shift_Del p.G346Efs*10 0.08 TCGA-EW-A2FV-01 21 45544564 45544564 A - PWP2 Frame_Shift_Del p.K641Rfs*18 0.10 TCGA-EW-A2FV-01 21 45947245 45947245 T - TSPEAR Frame_Shift_Del p.K360Sfs*52 0.10 TCGA-EW-A2FV-01 21 46032012 46032012 C - KRTAP10-8 5'UTR 0.09 TCGA-EW-A2FV-01 21 46057306 46057306 C - KRTAP10-10 5'UTR 0.10 TCGA-EW-A2FV-01 21 46554685 46554685 C - ADARB1 Intron 0.15 TCGA-EW-A2FV-01 21 46909418 46909418 G - COL18A1 Frame_Shift_Del p.L829Cfs*75 0.14 TCGA-EW-A2FV-01 21 46931085 46931085 C - COL18A1 Frame_Shift_Del p.A1434Hfs*12 0.09 TCGA-EW-A2FV-01 21 47611811 47611811 T - LSS Frame_Shift_Del p.N684Mfs*77 0.11 TCGA-EW-A2FV-01 21 47929199 47929199 A - DIP2A Frame_Shift_Del p.I273Sfs*5 0.10 TCGA-EW-A2FV-01 22 17688077 17688077 C - CECR1 Frame_Shift_Del p.I143Sfs*41 0.09 TCGA-EW-A2FV-01 22 18062647 18062647 C - SLC25A18 5'UTR 0.09 TCGA-EW-A2FV-01 22 18066255 18066255 C - SLC25A18 Frame_Shift_Del p.M123Wfs*112 0.09 TCGA-EW-A2FV-01 22 18220983 18220983 C - BID Frame_Shift_Del p.D172Tfs*50 0.11 TCGA-EW-A2FV-01 22 20041018 20041018 G - TANGO2 Frame_Shift_Del p.V109Sfs*14 0.09 TCGA-EW-A2FV-01 22 20127718 20127718 G - ZDHHC8 Frame_Shift_Del p.R215Afs*7 0.11 TCGA-EW-A2FV-01 22 20230025 20230025 G - RTN4R Frame_Shift_Del p.Q211Rfs*19 0.08 TCGA-EW-A2FV-01 22 21065053 21065053 C - PI4KA Frame_Shift_Del p.G2006Afs*52 0.13 TCGA-EW-A2FV-01 22 21242086 21242086 A - SNAP29 Frame_Shift_Del p.N247Tfs*2 0.10 TCGA-EW-A2FV-01 22 21332040 21332040 C - AIFM3 Frame_Shift_Del p.R446Efs*9 0.13 TCGA-EW-A2FV-01 22 22049309 22049309 C - PPIL2 Frame_Shift_Del p.Q474Rfs*100 0.14 TCGA-EW-A2FV-01 22 23237658 23237658 G - IGLL5 Frame_Shift_Del p.G144Efs*3 0.08 TCGA-EW-A2FV-01 22 23404075 23404075 G - RTDR1 Frame_Shift_Del p.I235Sfs*6 0.09 TCGA-EW-A2FV-01 22 23632539 23632539 G - BCR Frame_Shift_Del p.L909Sfs*5 0.09 TCGA-EW-A2FV-01 22 23959820 23964339 22:23959820-23964339 - C22orf43 large deletion p.X108_splice 0.13 TCGA-EW-A2FV-01 22 24039381 24039381 T - RGL4 Frame_Shift_Del p.L397* 0.15 TCGA-EW-A2FV-01 22 24458427 24458427 T - CABIN1 Frame_Shift_Del p.L546Sfs*13 0.08 TCGA-EW-A2FV-01 22 26164623 26164623 C - MYO18B Frame_Shift_Del p.K249Rfs*5 0.12 TCGA-EW-A2FV-01 22 26165133 26165133 A - MYO18B Frame_Shift_Del p.A418Pfs*5 0.14 TCGA-EW-A2FV-01 22 26877720 26877720 G - HPS4 Frame_Shift_Del p.S4Lfs*23 0.12 TCGA-EW-A2FV-01 22 29091133 29091133 C - CHEK2 Frame_Shift_Del p.A496Qfs*16 0.08 TCGA-EW-A2FV-01 22 29656004 29656004 C - RHBDD3 3'UTR 0.12 TCGA-EW-A2FV-01 22 29758998 29758998 T - AP1B1 Frame_Shift_Del p.D46Mfs*20 0.08 TCGA-EW-A2FV-01 22 30124628 30124628 A - CABP7 Frame_Shift_Del p.V89Wfs*7 0.16 TCGA-EW-A2FV-01 22 30163534 30163534 G - UQCR10 Frame_Shift_Del 0.12 TCGA-EW-A2FV-01 22 30415706 30415706 G - MTMR3 Frame_Shift_Del p.Q688Rfs*16 0.12 TCGA-EW-A2FV-01 22 30418026 30418026 C - MTMR3 Frame_Shift_Del p.D1080Tfs*34 0.08 TCGA-EW-A2FV-01 22 30639858 30639858 G - LIF Frame_Shift_Del p.L131Sfs*36 0.09 TCGA-EW-A2FV-01 22 30734871 30734871 G - SF3A1 Frame_Shift_Del p.N551Mfs*63 0.08 TCGA-EW-A2FV-01 22 30769926 30769926 C - CCDC157 Frame_Shift_Del p.L507Cfs*17 0.19 TCGA-EW-A2FV-01 22 30983318 30983318 T - PES1 Frame_Shift_Del p.K108Rfs*223 0.10 TCGA-EW-A2FV-01 22 31289628 31289628 G - OSBP2 Frame_Shift_Del p.D701Tfs*5 0.08 TCGA-EW-A2FV-01 22 31486953 31486953 C - SMTN Frame_Shift_Del p.A318Pfs*39 0.10 TCGA-EW-A2FV-01 22 32111688 32111688 T - PRR14L Frame_Shift_Del p.I713* 0.09 TCGA-EW-A2FV-01 22 32150956 32150956 G - DEPDC5 Frame_Shift_Del p.G18Afs*6 0.08 TCGA-EW-A2FV-01 22 32160996 32160996 T - DEPDC5 Frame_Shift_Del p.F77Sfs*3 0.10 TCGA-EW-A2FV-01 22 32200846 32200846 C - DEPDC5 Frame_Shift_Del p.R389Vfs*15 0.10 TCGA-EW-A2FV-01 22 32439282 32439282 C - SLC5A1 Frame_Shift_Del p.W6Gfs*33 0.14 TCGA-EW-A2FV-01 22 32843216 32843216 C - BPIFC Frame_Shift_Del p.F120Sfs*27 0.09 TCGA-EW-A2FV-01 22 36205871 36205871 C - RBFOX2 Frame_Shift_Del p.E140Sfs*70 0.08 TCGA-EW-A2FV-01 22 36701150 36701150 T - MYH9 Splice_Site p.X720_splice 0.12 TCGA-EW-A2FV-01 22 36876781 36876781 G - TXN2 Frame_Shift_Del p.P35Hfs*8 0.08 TCGA-EW-A2FV-01 22 36900295 36900295 G - FOXRED2 Frame_Shift_Del p.P300Rfs*36 0.18 TCGA-EW-A2FV-01 22 36960614 36960614 G - CACNG2 Frame_Shift_Del p.S253Pfs*26 0.17 TCGA-EW-A2FV-01 22 37678595 37678595 C - CYTH4 5'UTR 0.18 TCGA-EW-A2FV-01 22 37771440 37771440 G - ELFN2 Frame_Shift_Del p.Y46Tfs*73 0.11 TCGA-EW-A2FV-01 22 37900661 37900661 C - CARD10 Frame_Shift_Del p.G500Dfs*58 0.11 TCGA-EW-A2FV-01 22 38109381 38109381 C - TRIOBP Frame_Shift_Del p.A141Pfs*32 0.10 TCGA-EW-A2FV-01 22 38271902 38271902 T - EIF3L Frame_Shift_Del p.F321Lfs*4 0.07 TCGA-EW-A2FV-01 22 38315092 38315092 C - MICALL1 Frame_Shift_Del p.S161Afs*180 0.17 TCGA-EW-A2FV-01 22 38347510 38347510 T - C22orf23 Frame_Shift_Del p.K41Nfs*2 0.08 TCGA-EW-A2FV-01 22 39095994 39095994 T - JOSD1 5'UTR 0.09 TCGA-EW-A2FV-01 22 39822792 39822792 C T TAB1 Missense_Mutation p.R336C 0.22 deleterious(0) probably_damaging(0.997) TCGA-EW-A2FV-01 22 40814390 40814390 C - MKL1 Frame_Shift_Del p.S685Afs*37 0.09 TCGA-EW-A2FV-01 22 40816876 40816876 G - MKL1 Frame_Shift_Del p.Q286Rfs*51 0.10 TCGA-EW-A2FV-01 22 40820312 40820312 G - MKL1 Frame_Shift_Del p.E126Sfs*104 0.11 TCGA-EW-A2FV-01 22 41076973 41076973 A - MCHR1 Frame_Shift_Del p.S104Afs*32 0.09 TCGA-EW-A2FV-01 22 41305132 41305132 T - XPNPEP3 Frame_Shift_Del p.F288Lfs*11 0.10 TCGA-EW-A2FV-01 22 41625729 41625729 C - CHADL Frame_Shift_Del p.K757Rfs*37 0.10 TCGA-EW-A2FV-01 22 41973316 41973316 C - CSDC2 3'Flank 0.13 TCGA-EW-A2FV-01 22 42119999 42119999 C - MEI1 Frame_Shift_Del p.Q263Rfs*43 0.08 TCGA-EW-A2FV-01 22 42154469 42154469 G - MEI1 Frame_Shift_Del p.G685Efs*82 0.09 TCGA-EW-A2FV-01 22 42159241 42159241 G - MEI1 Frame_Shift_Del p.G729Afs*38 0.09 TCGA-EW-A2FV-01 22 42537221 42537221 G - NDUFA6-AS1 3'Flank 0.16 TCGA-EW-A2FV-01 22 42606575 42606575 T - TCF20 Frame_Shift_Del p.K1579Nfs*36 0.10 TCGA-EW-A2FV-01 22 43308086 43308086 T - PACSIN2 Frame_Shift_Del p.M1? 0.09 TCGA-EW-A2FV-01 22 43608580 43608580 A - SCUBE1 Frame_Shift_Del p.F691Sfs*167 0.16 TCGA-EW-A2FV-01 22 43976443 43976443 T - EFCAB6 Frame_Shift_Del p.E1044Kfs*11 0.10 TCGA-EW-A2FV-01 22 44031036 44031036 T - EFCAB6 Frame_Shift_Del p.I682* 0.11 TCGA-EW-A2FV-01 22 44063078 44063078 T - EFCAB6 Frame_Shift_Del p.K630Sfs*49 0.10 TCGA-EW-A2FV-01 22 45826932 45826932 G - RIBC2 Frame_Shift_Del p.E348Sfs*9 0.18 TCGA-EW-A2FV-01 22 45938105 45938105 T - FBLN1 Frame_Shift_Del p.F380Sfs*151 0.10 TCGA-EW-A2FV-01 22 47189427 47189427 C - TBC1D22A Frame_Shift_Del p.T51Hfs*3 0.11 TCGA-EW-A2FV-01 22 50167913 50167913 C - BRD1 Frame_Shift_Del p.E1049Sfs*39 0.11 TCGA-EW-A2FV-01 22 50660930 50660930 C - TUBGCP6 Frame_Shift_Del p.E788Rfs*9 0.16 TCGA-EW-A2FV-01 22 50671829 50671829 G - TUBGCP6 Frame_Shift_Del p.V345Cfs*3 0.11 TCGA-EW-A2FV-01 22 50879299 50879299 C - PPP6R2 Frame_Shift_Del p.L784Cfs*28 0.09 TCGA-EW-A2FV-01 22 50893963 50893963 A - SBF1 Frame_Shift_Del p.S1439Qfs*148 0.15 TCGA-EW-A2FV-01 22 51183309 51183309 C - ACR Frame_Shift_Del p.F316Sfs*77 0.09 TCGA-EW-A2FV-01 22 51207235 51207235 G - RABL2B Frame_Shift_Del p.P229Hfs*65 0.10 TCGA-EW-A2FV-01 2 101653999 101653999 G - TBC1D8 Frame_Shift_Del p.R468Efs*7 0.10 TCGA-EW-A2FV-01 2 101675984 101675984 T - TBC1D8 Frame_Shift_Del p.I86Sfs*33 0.09 TCGA-EW-A2FV-01 2 10188566 10188566 C - KLF11 Frame_Shift_Del p.A370Pfs*17 0.08 TCGA-EW-A2FV-01 2 102314532 102314532 A - MAP4K4 5'Flank 0.10 TCGA-EW-A2FV-01 2 102460623 102460623 G - MAP4K4 Frame_Shift_Del p.E362Rfs*48 0.13 TCGA-EW-A2FV-01 2 102480293 102480293 C - MAP4K4 Intron 0.09 TCGA-EW-A2FV-01 2 102964484 102964484 A - IL1RL1 Frame_Shift_Del p.M352Cfs*13 0.08 TCGA-EW-A2FV-01 2 106713186 106713186 C - UXS1 Frame_Shift_Del p.W379Gfs*11 0.10 TCGA-EW-A2FV-01 2 10712191 10712191 C - NOL10 3'UTR 0.10 TCGA-EW-A2FV-01 2 108477239 108477239 T - RGPD4 Frame_Shift_Del p.Y594Mfs*7 0.09 TCGA-EW-A2FV-01 2 108626828 108626828 C - SLC5A7 Frame_Shift_Del p.Q420Sfs*26 0.08 TCGA-EW-A2FV-01 2 109347867 109347867 A - RANBP2 Frame_Shift_Del p.K115Nfs*20 0.08 TCGA-EW-A2FV-01 2 109378595 109378595 C - RANBP2 Frame_Shift_Del p.P881Qfs*25 0.08 TCGA-EW-A2FV-01 2 109381591 109381591 A - RANBP2 Frame_Shift_Del p.S1534Vfs*20 0.11 TCGA-EW-A2FV-01 2 109547438 109547438 G - EDAR Frame_Shift_Del p.W12Gfs*9 0.08 TCGA-EW-A2FV-01 2 110049098 110049098 C - SH3RF3 Frame_Shift_Del p.G517Efs*4 0.13 TCGA-EW-A2FV-01 2 111416240 111416240 C - BUB1 Frame_Shift_Del p.P453Hfs*16 0.09 TCGA-EW-A2FV-01 2 11300602 11300602 T - PQLC3 Frame_Shift_Del p.L53Cfs*12 0.09 TCGA-EW-A2FV-01 2 11355698 11355698 T - ROCK2 Frame_Shift_Del p.N512Mfs*25 0.09 TCGA-EW-A2FV-01 2 114257004 114257004 G - FOXD4L1 Frame_Shift_Del p.L59Cfs*103 0.11 TCGA-EW-A2FV-01 2 114476837 114476837 A - SLC35F5 Frame_Shift_Del p.S464Hfs*5 0.12 TCGA-EW-A2FV-01 2 114501290 114501290 T - SLC35F5 Frame_Shift_Del p.T188Pfs*7 0.08 TCGA-EW-A2FV-01 2 114713232 114713232 C - ACTR3 Frame_Shift_Del p.H371Tfs*64 0.10 TCGA-EW-A2FV-01 2 120833073 120833073 A - EPB41L5 Frame_Shift_Del p.K144Nfs*9 0.08 TCGA-EW-A2FV-01 2 120849155 120849155 A - EPB41L5 Frame_Shift_Del p.T358Pfs*25 0.10 TCGA-EW-A2FV-01 2 121999994 121999994 T - TFCP2L1 Frame_Shift_Del p.R237Efs*31 0.09 TCGA-EW-A2FV-01 2 125284951 125284951 C - CNTNAP5 Frame_Shift_Del p.K523Rfs*117 0.08 TCGA-EW-A2FV-01 2 127818209 127818209 T - BIN1 Intron 0.09 TCGA-EW-A2FV-01 2 128699613 128699613 T - SAP130 Frame_Shift_Del p.V1074Cfs*4 0.09 TCGA-EW-A2FV-01 2 128944315 128944315 T - UGGT1 Frame_Shift_Del p.W1474Gfs*24 0.13 TCGA-EW-A2FV-01 2 130949427 130949427 C - TUBA3E Frame_Shift_Del p.A444Lfs*20 0.08 TCGA-EW-A2FV-01 2 131878470 131878470 G - PLEKHB2 Intron 0.09 TCGA-EW-A2FV-01 2 131878485 131878485 C - PLEKHB2 Intron 0.09 TCGA-EW-A2FV-01 2 135102537 135102537 C - MGAT5 Frame_Shift_Del p.P339Qfs*3 0.08 TCGA-EW-A2FV-01 2 135926307 135926307 T - RAB3GAP1 Frame_Shift_Del p.F975Lfs*53 0.09 TCGA-EW-A2FV-01 2 136570132 136570132 G - LCT Frame_Shift_Del p.P701Lfs*13 0.11 TCGA-EW-A2FV-01 2 141079578 141079578 T - LRP1B Frame_Shift_Del p.G4199Efs*4 0.08 TCGA-EW-A2FV-01 2 141110593 141110593 T - LRP1B Frame_Shift_Del p.N3860Mfs*22 0.08 TCGA-EW-A2FV-01 2 141113974 141113974 T - LRP1B Frame_Shift_Del p.T3823Hfs*15 0.10 TCGA-EW-A2FV-01 2 141115624 141115624 T - LRP1B Frame_Shift_Del p.K3773Nfs*26 0.09 TCGA-EW-A2FV-01 2 141660615 141660615 T - LRP1B Frame_Shift_Del p.I1214Lfs*9 0.09 TCGA-EW-A2FV-01 2 141680622 141680622 T - LRP1B Frame_Shift_Del p.D1078Tfs*101 0.10 TCGA-EW-A2FV-01 2 141773388 141773388 A - LRP1B Frame_Shift_Del p.F689Lfs*2 0.09 TCGA-EW-A2FV-01 2 141819688 141819688 A - LRP1B Frame_Shift_Del p.Y390Tfs*7 0.11 TCGA-EW-A2FV-01 2 143676224 143676224 G - KYNU Frame_Shift_Del p.G73Efs*19 0.09 TCGA-EW-A2FV-01 2 145156028 145156028 A - ZEB2 Frame_Shift_Del p.F909Sfs*21 0.12 TCGA-EW-A2FV-01 2 145187452 145187452 G - ZEB2 Frame_Shift_Del p.P72Hfs*3 0.10 TCGA-EW-A2FV-01 2 149248098 149248098 C - MBD5 Frame_Shift_Del p.P1400Lfs*4 0.14 TCGA-EW-A2FV-01 2 152128147 152128147 T - NMI Frame_Shift_Del p.K245Sfs*15 0.09 TCGA-EW-A2FV-01 2 152293373 152293373 C - RIF1 Frame_Shift_Del p.R411Efs*2 0.14 TCGA-EW-A2FV-01 2 152370843 152370843 T - NEB Frame_Shift_Del p.I7706Sfs*20 0.08 TCGA-EW-A2FV-01 2 152382765 152382765 T - NEB Frame_Shift_Del p.E7320Rfs*62 0.09 TCGA-EW-A2FV-01 2 152426710 152426710 T - NEB Frame_Shift_Del p.N5772Ifs*27 0.09 TCGA-EW-A2FV-01 2 152466353 152466353 T - NEB Frame_Shift_Del p.A4101Qfs*33 0.08 TCGA-EW-A2FV-01 2 152486067 152486067 C - NEB Frame_Shift_Del p.D3273Tfs*31 0.09 TCGA-EW-A2FV-01 2 152534484 152534484 T - NEB Frame_Shift_Del p.N1158Mfs*26 0.08 TCGA-EW-A2FV-01 2 152550847 152550847 T - NEB Frame_Shift_Del p.N629Tfs*19 0.09 TCGA-EW-A2FV-01 2 152733037 152733037 C - CACNB4 Frame_Shift_Del p.V142* 0.09 TCGA-EW-A2FV-01 2 153192147 153192147 G - FMNL2 Frame_Shift_Del p.Q10Hfs*12 0.09 TCGA-EW-A2FV-01 2 153378514 153378514 A - FMNL2 Frame_Shift_Del p.K60Nfs*4 0.14 TCGA-EW-A2FV-01 2 153475510 153475510 G - FMNL2 Frame_Shift_Del p.D490Ifs*20 0.10 TCGA-EW-A2FV-01 2 160231223 160231223 T - BAZ2B Frame_Shift_Del p.K1349Nfs*6 0.09 TCGA-EW-A2FV-01 2 160335138 160335138 T - BAZ2B Frame_Shift_Del p.G32Vfs*70 0.10 TCGA-EW-A2FV-01 2 162696371 162696371 T - SLC4A10 Frame_Shift_Del p.F118Sfs*24 0.09 TCGA-EW-A2FV-01 2 162865750 162865750 C - DPP4 Splice_Site p.X629_splice 0.10 TCGA-EW-A2FV-01 2 165947176 165947176 G - SCN3A Frame_Shift_Del p.N1830Tfs*66 0.09 TCGA-EW-A2FV-01 2 165994605 165994605 T - SCN3A Frame_Shift_Del p.K725Nfs*14 0.11 TCGA-EW-A2FV-01 2 166901649 166901649 T - SCN1A Frame_Shift_Del p.K522Nfs*22 0.11 TCGA-EW-A2FV-01 2 167304197 167304197 T - SCN7A Frame_Shift_Del p.M438* 0.08 TCGA-EW-A2FV-01 2 168104659 168104659 T - XIRP2 Frame_Shift_Del p.L2254* 0.09 TCGA-EW-A2FV-01 2 169038515 169038515 T - STK39 Frame_Shift_Del p.K98Nfs*10 0.08 TCGA-EW-A2FV-01 2 169574452 169574452 T - CERS6 Frame_Shift_Del p.F271Lfs*14 0.09 TCGA-EW-A2FV-01 2 169707460 169707460 T - NOSTRIN Frame_Shift_Del p.F249Lfs*5 0.08 TCGA-EW-A2FV-01 2 169721417 169721417 T - NOSTRIN Frame_Shift_Del p.P545Lfs*24 0.09 TCGA-EW-A2FV-01 2 169727994 169727994 A - SPC25 Frame_Shift_Del p.S208Qfs*47 0.11 TCGA-EW-A2FV-01 2 171806233 171806233 A - GORASP2 Frame_Shift_Del p.N111Mfs*26 0.09 TCGA-EW-A2FV-01 2 172016957 172016957 C - TLK1 5'UTR 0.15 TCGA-EW-A2FV-01 2 172841169 172841169 T - HAT1 Frame_Shift_Del p.S301Pfs*5 0.08 TCGA-EW-A2FV-01 2 172926306 172926306 T - METAP1D Frame_Shift_Del p.R43Gfs*10 0.08 TCGA-EW-A2FV-01 2 173894920 173894920 T - RAPGEF4 Frame_Shift_Del p.F864Lfs*7 0.09 TCGA-EW-A2FV-01 2 174085979 174085979 A - MLTK Intron 0.08 TCGA-EW-A2FV-01 2 175446107 175446107 A - WIPF1 Frame_Shift_Del p.S38Lfs*9 0.08 TCGA-EW-A2FV-01 2 17696742 17696742 T - RAD51AP2 Frame_Shift_Del p.I981Lfs*8 0.13 TCGA-EW-A2FV-01 2 179400902 179400902 T - TTN Frame_Shift_Del p.K33524Nfs*18 0.08 TCGA-EW-A2FV-01 2 179422099 179422099 A - TTN Frame_Shift_Del p.F29297Sfs*104 0.08 TCGA-EW-A2FV-01 2 179438055 179438055 G - TTN Frame_Shift_Del p.W24269Gfs*12 0.10 TCGA-EW-A2FV-01 2 179470319 179470319 T - TTN Frame_Shift_Del p.K17901Nfs*54 0.11 TCGA-EW-A2FV-01 2 179495909 179495909 C - TTN Frame_Shift_Del p.K14623Rfs*3 0.09 TCGA-EW-A2FV-01 2 179616189 179616189 T - TTN Intron 0.18 TCGA-EW-A2FV-01 2 179736958 179736958 C - CCDC141 Frame_Shift_Del p.E661Kfs*38 0.08 TCGA-EW-A2FV-01 2 180838436 180838436 T - CWC22 Frame_Shift_Del p.K225Nfs*8 0.11 TCGA-EW-A2FV-01 2 181925516 181925516 C - UBE2E3 Frame_Shift_Del p.L169Ffs*2 0.09 TCGA-EW-A2FV-01 2 183593340 183593340 T - DNAJC10 Frame_Shift_Del p.Y154Tfs*11 0.09 TCGA-EW-A2FV-01 2 183943812 183943812 G - DUSP19 Frame_Shift_Del p.G52Vfs*24 0.08 TCGA-EW-A2FV-01 2 187697926 187697926 T - ZSWIM2 Frame_Shift_Del p.R288Efs*6 0.09 TCGA-EW-A2FV-01 2 188247932 188247932 T - CALCRL Frame_Shift_Del p.K51Rfs*85 0.08 TCGA-EW-A2FV-01 2 190927228 190927228 T - MSTN Frame_Shift_Del p.N32Mfs*22 0.08 TCGA-EW-A2FV-01 2 191302114 191302114 G - MFSD6 Frame_Shift_Del p.A454Lfs*35 0.10 TCGA-EW-A2FV-01 2 191765339 191765339 T - GLS Frame_Shift_Del p.F219Lfs*2 0.08 TCGA-EW-A2FV-01 2 191927573 191927573 T - STAT4 Frame_Shift_Del p.M286* 0.09 TCGA-EW-A2FV-01 2 196682496 196682496 T - DNAH7 Frame_Shift_Del p.I3117Lfs*17 0.09 TCGA-EW-A2FV-01 2 196723493 196723493 C - DNAH7 Frame_Shift_Del p.G2591Vfs*12 0.09 TCGA-EW-A2FV-01 2 197878407 197878407 T - HNRNPA3P15 5'Flank 0.09 TCGA-EW-A2FV-01 2 201499559 201499559 A - AOX1 Frame_Shift_Del p.S757Afs*33 0.09 TCGA-EW-A2FV-01 2 202013763 202013763 T - CFLAR Frame_Shift_Del p.L235Cfs*12 0.09 TCGA-EW-A2FV-01 2 202619270 202619270 C - ALS2 Frame_Shift_Del p.K535Rfs*19 0.10 TCGA-EW-A2FV-01 2 202712156 202712156 G - CDK15 Frame_Shift_Del p.V303Ffs*66 0.08 TCGA-EW-A2FV-01 2 203693773 203693773 A - ICA1L Intron 0.12 TCGA-EW-A2FV-01 2 203836283 203836283 C - CARF Frame_Shift_Del p.C386Afs*36 0.10 TCGA-EW-A2FV-01 2 203995114 203995114 T - NBEAL1 Frame_Shift_Del p.F1132Lfs*14 0.09 TCGA-EW-A2FV-01 2 20494235 20494235 C - PUM2 Frame_Shift_Del p.V352Cfs*84 0.09 TCGA-EW-A2FV-01 2 206874423 206874423 T - INO80D Frame_Shift_Del p.K546Nfs*49 0.10 TCGA-EW-A2FV-01 2 207509210 207509210 A - AC010731.4 RNA 0.08 TCGA-EW-A2FV-01 2 207630018 207630018 G - MDH1B 5'UTR 0.11 TCGA-EW-A2FV-01 2 20818729 20818729 G - HS1BP3 3'UTR 0.09 TCGA-EW-A2FV-01 2 210588326 210588326 T - MAP2 Intron 0.10 TCGA-EW-A2FV-01 2 210835555 210835555 G - UNC80 Splice_Site p.X2645_splice 0.09 TCGA-EW-A2FV-01 2 21227489 21227489 A - APOB Frame_Shift_Del p.F3949Lfs*58 0.08 TCGA-EW-A2FV-01 2 21233672 21233672 G - APOB Frame_Shift_Del p.P2023Qfs*18 0.08 TCGA-EW-A2FV-01 2 212578285 212578285 T - ERBB4 Frame_Shift_Del p.K324Nfs*19 0.12 TCGA-EW-A2FV-01 2 216248069 216248069 T - FN1 Frame_Shift_Del p.T1678Lfs*11 0.08 TCGA-EW-A2FV-01 2 216903968 216903968 G - PECR 3'UTR 0.09 TCGA-EW-A2FV-01 2 216965042 216965042 C - TMEM169 Frame_Shift_Del p.L225Sfs*68 0.10 TCGA-EW-A2FV-01 2 218713102 218713102 A - TNS1 Frame_Shift_Del p.L588* 0.15 TCGA-EW-A2FV-01 2 219127935 219127935 C - GPBAR1 Frame_Shift_Del p.Y165Tfs*104 0.09 TCGA-EW-A2FV-01 2 219140766 219140766 C - TMBIM1 Frame_Shift_Del p.A258Pfs*49 0.08 TCGA-EW-A2FV-01 2 219449378 219449378 T - RQCD1 Frame_Shift_Del p.L123Cfs*25 0.10 TCGA-EW-A2FV-01 2 219457074 219457074 G - RQCD1 Frame_Shift_Del p.A197Lfs*15 0.08 TCGA-EW-A2FV-01 2 219513388 219513388 C - ZNF142 Frame_Shift_Del p.V415Cfs*27 0.10 TCGA-EW-A2FV-01 2 219529905 219529905 T - RNF25 Frame_Shift_Del p.A214Qfs*65 0.10 TCGA-EW-A2FV-01 2 219530642 219530642 T - RNF25 Frame_Shift_Del p.K190Nfs*23 0.08 TCGA-EW-A2FV-01 2 219557363 219557363 T - STK36 Frame_Shift_Del p.S659Pfs*32 0.10 TCGA-EW-A2FV-01 2 220034663 220034663 C - SLC23A3 Frame_Shift_Del p.G15Afs*102 0.08 TCGA-EW-A2FV-01 2 220149505 220149505 G - DNAJB2 Frame_Shift_Del p.A258Pfs*95 0.12 TCGA-EW-A2FV-01 2 220342440 220342440 G - SPEG Frame_Shift_Del p.E1588Rfs*31 0.10 TCGA-EW-A2FV-01 2 220355603 220355603 T - SPEG Frame_Shift_Del p.F3104Lfs*30 0.10 TCGA-EW-A2FV-01 2 220371524 220371524 G - GMPPA 3'UTR 0.12 TCGA-EW-A2FV-01 2 220401972 220401972 G - ASIC4 Frame_Shift_Del p.G553Dfs*29 0.12 TCGA-EW-A2FV-01 2 220435134 220435134 T - OBSL1 Frame_Shift_Del p.E274Gfs*63 0.09 TCGA-EW-A2FV-01 2 220474199 220474199 C - STK11IP Frame_Shift_Del p.P692Qfs*8 0.08 TCGA-EW-A2FV-01 2 222436965 222436965 C - EPHA4 Frame_Shift_Del p.A2Lfs*45 0.11 TCGA-EW-A2FV-01 2 223783856 223783856 C - ACSL3 Frame_Shift_Del p.K249Rfs*35 0.10 TCGA-EW-A2FV-01 2 224462299 224462299 T - SCG2 Frame_Shift_Del p.R568Gfs*23 0.09 TCGA-EW-A2FV-01 2 225339008 225339008 A - CUL3 Frame_Shift_Del p.L754Wfs*14 0.08 TCGA-EW-A2FV-01 2 225342961 225342961 T - CUL3 Frame_Shift_Del p.M711* 0.08 TCGA-EW-A2FV-01 2 225634999 225634999 C - DOCK10 Frame_Shift_Del p.E2125Sfs*6 0.09 TCGA-EW-A2FV-01 2 225710259 225710259 T - DOCK10 Frame_Shift_Del p.K779Rfs*16 0.09 TCGA-EW-A2FV-01 2 227661544 227661544 G - IRS1 Frame_Shift_Del p.K638Rfs*26 0.09 TCGA-EW-A2FV-01 2 228145675 228145675 G - COL4A3 Frame_Shift_Del p.G815Efs*8 0.10 TCGA-EW-A2FV-01 2 228883188 228883188 T - SPHKAP Frame_Shift_Del p.K794Nfs*7 0.10 TCGA-EW-A2FV-01 2 231036430 231036430 A - SP110 Frame_Shift_Del p.F623Lfs*28 0.08 TCGA-EW-A2FV-01 2 231314408 231314408 A - SP100 Frame_Shift_Del p.K241Rfs*15 0.08 TCGA-EW-A2FV-01 2 232320787 232320787 T - NCL Frame_Shift_Del p.K589Rfs*12 0.09 TCGA-EW-A2FV-01 2 232325202 232325202 T - NCL Frame_Shift_Del p.K295Nfs*20 0.10 TCGA-EW-A2FV-01 2 232325455 232325455 C - NCL Frame_Shift_Del p.D246Mfs*69 0.09 TCGA-EW-A2FV-01 2 232663596 232663596 G - COPS7B Frame_Shift_Del p.G187Afs*7 0.08 TCGA-EW-A2FV-01 2 233407736 233407736 C - CHRNG Frame_Shift_Del p.C252Vfs*58 0.08 TCGA-EW-A2FV-01 2 233407781 233407781 T - CHRNG Frame_Shift_Del p.P266Lfs*44 0.09 TCGA-EW-A2FV-01 2 233704611 233704611 C - GIGYF2 Frame_Shift_Del p.Q962Rfs*12 0.09 TCGA-EW-A2FV-01 2 234368975 234368975 G - DGKD Frame_Shift_Del p.V990Sfs*9 0.09 TCGA-EW-A2FV-01 2 234871949 234871949 C - TRPM8 Frame_Shift_Del p.L561Cfs*38 0.08 TCGA-EW-A2FV-01 2 234878884 234878884 G - TRPM8 Frame_Shift_Del p.L724Ffs*60 0.09 TCGA-EW-A2FV-01 2 236649670 236649670 A - AGAP1 Frame_Shift_Del p.G127Afs*24 0.08 TCGA-EW-A2FV-01 2 238245080 238245080 T - COL6A3 Frame_Shift_Del p.K2888Sfs*3 0.09 TCGA-EW-A2FV-01 2 239051484 239051484 G - KLHL30 Frame_Shift_Del p.V274Wfs*51 0.08 TCGA-EW-A2FV-01 2 239161640 239161640 C - PER2 Frame_Shift_Del p.T1009Pfs*10 0.12 TCGA-EW-A2FV-01 2 239185804 239185804 T - PER2 Frame_Shift_Del p.K87Nfs*25 0.08 TCGA-EW-A2FV-01 2 239186380 239186380 C - PER2 Frame_Shift_Del p.M67Cfs*17 0.09 TCGA-EW-A2FV-01 2 240982168 240982168 G - PRR21 Frame_Shift_Del p.L78Ffs*308 0.08 TCGA-EW-A2FV-01 2 240982196 240982196 G - PRR21 Frame_Shift_Del p.F69Sfs*317 0.10 TCGA-EW-A2FV-01 2 241404896 241404896 C - GPC1 Frame_Shift_Del p.E427Rfs*25 0.11 TCGA-EW-A2FV-01 2 241531505 241531505 G - CAPN10 Frame_Shift_Del p.Q210Sfs*5 0.11 TCGA-EW-A2FV-01 2 241569684 241569684 C - GPR35 Frame_Shift_Del p.L137Wfs*87 0.13 TCGA-EW-A2FV-01 2 241676539 241676539 G - KIF1A Frame_Shift_Del p.N1317Tfs*39 0.09 TCGA-EW-A2FV-01 2 241683419 241683419 A - KIF1A Frame_Shift_Del p.F1175Sfs*23 0.08 TCGA-EW-A2FV-01 2 241697863 241697863 G - KIF1A Frame_Shift_Del p.S833Pfs*11 0.10 TCGA-EW-A2FV-01 2 241722520 241722520 C - KIF1A Frame_Shift_Del p.A269Pfs*7 0.11 TCGA-EW-A2FV-01 2 241723178 241723178 C - KIF1A Frame_Shift_Del p.G259Efs*17 0.10 TCGA-EW-A2FV-01 2 242002243 242002243 G - SNED1 Frame_Shift_Del p.G766Afs*102 0.10 TCGA-EW-A2FV-01 2 242035435 242035435 T - MTERFD2 Frame_Shift_Del p.E375Gfs*36 0.08 TCGA-EW-A2FV-01 2 242430979 242430979 G - FARP2 Frame_Shift_Del p.G892Vfs*46 0.10 TCGA-EW-A2FV-01 2 24929489 24929489 C - NCOA1 Frame_Shift_Del p.R385Efs*2 0.13 TCGA-EW-A2FV-01 2 24964885 24964885 C - NCOA1 Frame_Shift_Del p.P1180Hfs*11 0.11 TCGA-EW-A2FV-01 2 25141238 25141238 C - ADCY3 Frame_Shift_Del p.V207Sfs*58 0.11 TCGA-EW-A2FV-01 2 25458629 25458629 A - DNMT3A Frame_Shift_Del p.P849Lfs*4 0.09 TCGA-EW-A2FV-01 2 25468182 25468182 C - DNMT3A Frame_Shift_Del p.S499Afs*152 0.11 TCGA-EW-A2FV-01 2 26203303 26203303 T - KIF3C Frame_Shift_Del p.K495Rfs*47 0.12 TCGA-EW-A2FV-01 2 26204618 26204618 T - KIF3C Frame_Shift_Del p.T57Pfs*22 0.12 TCGA-EW-A2FV-01 2 26204630 26204630 C - KIF3C Frame_Shift_Del p.E53Sfs*26 0.14 TCGA-EW-A2FV-01 2 26399294 26399294 C - GAREML Frame_Shift_Del p.L66Wfs*35 0.10 TCGA-EW-A2FV-01 2 26410347 26410347 A - GAREML Frame_Shift_Del p.K616Sfs*158 0.10 TCGA-EW-A2FV-01 2 26427019 26427019 G - HADHA Frame_Shift_Del p.Q378Kfs*8 0.09 TCGA-EW-A2FV-01 2 26534107 26534107 G - GPR113 Frame_Shift_Del p.P830Hfs*83 0.12 TCGA-EW-A2FV-01 2 26569078 26569078 G - EPT1 5'UTR 0.08 TCGA-EW-A2FV-01 2 26685000 26685000 C - OTOF Frame_Shift_Del p.D1748Tfs*15 0.10 TCGA-EW-A2FV-01 2 27164837 27164837 A - DPYSL5 Frame_Shift_Del p.E370Gfs*16 0.10 TCGA-EW-A2FV-01 2 27264378 27264378 G - TMEM214 3'UTR 0.10 TCGA-EW-A2FV-01 2 27293058 27293058 G - AGBL5 Frame_Shift_Del p.G864Vfs*17 0.10 TCGA-EW-A2FV-01 2 27306708 27306708 G - EMILIN1 Frame_Shift_Del p.L758Sfs*52 0.09 TCGA-EW-A2FV-01 2 27353273 27353273 C - ABHD1 Frame_Shift_Del p.V334Sfs*40 0.10 TCGA-EW-A2FV-01 2 27355191 27355191 G - PREB Frame_Shift_Del p.P278Lfs*38 0.16 TCGA-EW-A2FV-01 2 27357168 27357168 A - PREB Frame_Shift_Del p.I41Kfs*10 0.13 TCGA-EW-A2FV-01 2 27439448 27439448 T - ATRAID Frame_Shift_Del p.C238Vfs*55 0.10 TCGA-EW-A2FV-01 2 27505696 27505696 T - TRIM54 Frame_Shift_Del p.F33Sfs*6 0.09 TCGA-EW-A2FV-01 2 27592326 27592326 C - EIF2B4 Frame_Shift_Del p.A77Qfs*58 0.12 TCGA-EW-A2FV-01 2 27592742 27592742 C - EIF2B4 Splice_Site p.X46_splice 0.16 TCGA-EW-A2FV-01 2 27682634 27682634 C - IFT172 Frame_Shift_Del p.D862Tfs*42 0.11 TCGA-EW-A2FV-01 2 27724005 27724005 C - GCKR Frame_Shift_Del p.F186Lfs*10 0.09 TCGA-EW-A2FV-01 2 27850027 27850027 G - CCDC121 Frame_Shift_Del p.Q376Rfs*3 0.09 TCGA-EW-A2FV-01 2 28761189 28761189 G - PLB1 Frame_Shift_Del p.A189Rfs*8 0.17 TCGA-EW-A2FV-01 2 29152490 29152490 A - WDR43 Frame_Shift_Del p.G453Efs*18 0.08 TCGA-EW-A2FV-01 2 29164389 29164389 T - WDR43 Frame_Shift_Del p.Q563Rfs*13 0.08 TCGA-EW-A2FV-01 2 30480415 30480415 T - LBH Frame_Shift_Del p.E83Rfs*52 0.10 TCGA-EW-A2FV-01 2 30977157 30977157 A - CAPN13 Frame_Shift_Del p.W314Gfs*37 0.10 TCGA-EW-A2FV-01 2 31135112 31135112 A - GALNT14 Frame_Shift_Del p.C498Afs*20 0.09 TCGA-EW-A2FV-01 2 32605313 32605313 A - BIRC6 Frame_Shift_Del p.N202Ifs*27 0.08 TCGA-EW-A2FV-01 2 32688315 32688315 G - BIRC6 Frame_Shift_Del p.E1604Kfs*6 0.09 TCGA-EW-A2FV-01 2 32703766 32703766 C - BIRC6 Frame_Shift_Del p.Q2379Sfs*30 0.10 TCGA-EW-A2FV-01 2 32832566 32832566 T - BIRC6 Frame_Shift_Del p.F4706Lfs*36 0.08 TCGA-EW-A2FV-01 2 36669814 36669814 C - CRIM1 Frame_Shift_Del p.P270Rfs*10 0.08 TCGA-EW-A2FV-01 2 37286061 37286061 G - HEATR5B Frame_Shift_Del p.P640Lfs*6 0.09 TCGA-EW-A2FV-01 2 37317823 37317823 G - GPATCH11 Splice_Site p.X93_splice 0.08 TCGA-EW-A2FV-01 2 37374057 37374057 T - EIF2AK2 Frame_Shift_Del p.K60Rfs*11 0.09 TCGA-EW-A2FV-01 2 37458875 37458875 G - NDUFAF7 Frame_Shift_Del p.P11Rfs*30 0.15 TCGA-EW-A2FV-01 2 38525637 38525637 T - ATL2 Frame_Shift_Del p.K427Nfs*6 0.11 TCGA-EW-A2FV-01 2 38812898 38812898 A - HNRNPLL Frame_Shift_Del p.F140Sfs*93 0.09 TCGA-EW-A2FV-01 2 38960693 38960693 T - GALM Frame_Shift_Del p.S340Lfs*7 0.10 TCGA-EW-A2FV-01 2 39181550 39181550 T - ARHGEF33 Frame_Shift_Del p.H394Tfs*2 0.09 TCGA-EW-A2FV-01 2 39453007 39453007 A - CDKL4 Frame_Shift_Del p.L88* 0.10 TCGA-EW-A2FV-01 2 39515282 39515282 G - MAP4K3 Frame_Shift_Del p.P485Hfs*7 0.08 TCGA-EW-A2FV-01 2 39944272 39944272 T - TMEM178A Frame_Shift_Del p.C260Afs*6 0.09 TCGA-EW-A2FV-01 2 42994598 42994598 G - HAAO Frame_Shift_Del p.C281Afs*13 0.11 TCGA-EW-A2FV-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.17 TCGA-EW-A2FV-01 2 44457847 44457847 A - PPM1B Frame_Shift_Del p.I479Yfs*7 0.09 TCGA-EW-A2FV-01 2 44550473 44550473 C - PREPL Frame_Shift_Del p.N609Ifs*12 0.10 TCGA-EW-A2FV-01 2 45640332 45640332 T - SRBD1 Frame_Shift_Del p.T812Lfs*3 0.09 TCGA-EW-A2FV-01 2 46711397 46711397 C - TMEM247 Frame_Shift_Del p.Q165Rfs*49 0.08 TCGA-EW-A2FV-01 2 54040191 54040191 G A ERLEC1 Missense_Mutation p.D403N 0.16 deleterious(0.04) probably_damaging(0.93) TCGA-EW-A2FV-01 2 54093295 54093295 T - PSME4 Frame_Shift_Del p.K1821Nfs*53 0.08 TCGA-EW-A2FV-01 2 54096558 54096558 T - PSME4 Frame_Shift_Del p.R1740Efs*8 0.08 TCGA-EW-A2FV-01 2 54127036 54127036 T - PSME4 Frame_Shift_Del p.K1135Rfs*6 0.09 TCGA-EW-A2FV-01 2 55253966 55253966 T - RTN4 Frame_Shift_Del p.K423Nfs*32 0.08 TCGA-EW-A2FV-01 2 55470703 55470703 T - MTIF2 Frame_Shift_Del p.E472Kfs*24 0.08 TCGA-EW-A2FV-01 2 58373552 58373552 A - VRK2 Frame_Shift_Del p.W376Gfs*9 0.08 TCGA-EW-A2FV-01 2 58386791 58386791 T - VRK2 Frame_Shift_Del p.L498* 0.08 TCGA-EW-A2FV-01 2 61575518 61575518 T - USP34 Frame_Shift_Del p.N591Mfs*57 0.09 TCGA-EW-A2FV-01 2 61713039 61713039 T - XPO1 Frame_Shift_Del p.N791Mfs*16 0.09 TCGA-EW-A2FV-01 2 64331896 64331896 G - PELI1 Frame_Shift_Del p.P47Lfs*6 0.09 TCGA-EW-A2FV-01 2 64863162 64863162 T - SERTAD2 Frame_Shift_Del p.T282Lfs*51 0.09 TCGA-EW-A2FV-01 2 64863894 64863894 G - SERTAD2 Frame_Shift_Del p.Q38Rfs*9 0.08 TCGA-EW-A2FV-01 2 66796173 66796173 C - MEIS1 Intron 0.08 TCGA-EW-A2FV-01 2 68691403 68691403 T - FBXO48 Frame_Shift_Del p.I136Sfs*14 0.09 TCGA-EW-A2FV-01 2 70015247 70015247 C - ANXA4 Frame_Shift_Del p.L25* 0.09 TCGA-EW-A2FV-01 2 70409045 70409045 T - C2orf42 Frame_Shift_Del p.I25Sfs*16 0.14 TCGA-EW-A2FV-01 2 70504115 70504115 T - PCYOX1 Frame_Shift_Del p.L371* 0.09 TCGA-EW-A2FV-01 2 70890688 70890688 T - ADD2 Frame_Shift_Del p.T684Pfs*32 0.10 TCGA-EW-A2FV-01 2 72740344 72740344 G - EXOC6B Frame_Shift_Del p.Q362Rfs*3 0.10 TCGA-EW-A2FV-01 2 73491603 73491603 C - FBXO41 Frame_Shift_Del p.V537Sfs*15 0.09 TCGA-EW-A2FV-01 2 74598192 74598192 T - DCTN1 Frame_Shift_Del p.I253Sfs*76 0.12 TCGA-EW-A2FV-01 2 74643137 74643137 C - C2orf81 Splice_Site p.X86_splice 0.15 TCGA-EW-A2FV-01 2 74717191 74717191 C - TTC31 Frame_Shift_Del p.Q58Rfs*94 0.09 TCGA-EW-A2FV-01 2 79255337 79255337 T - REG3G Frame_Shift_Del p.L156* 0.11 TCGA-EW-A2FV-01 2 84784890 84784890 A - DNAH6 Frame_Shift_Del p.N546Tfs*38 0.09 TCGA-EW-A2FV-01 2 84880882 84880882 C - DNAH6 Frame_Shift_Del p.P1840Qfs*2 0.09 TCGA-EW-A2FV-01 2 84940327 84940327 A - DNAH6 Frame_Shift_Del p.N3164Tfs*6 0.08 TCGA-EW-A2FV-01 2 85262153 85262153 G - KCMF1 Frame_Shift_Del p.E68Kfs*5 0.09 TCGA-EW-A2FV-01 2 85531091 85531091 C - TCF7L1 Frame_Shift_Del p.H246Tfs*31 0.10 TCGA-EW-A2FV-01 2 85820234 85820234 C - VAMP5 Frame_Shift_Del p.P103Hfs*47 0.08 TCGA-EW-A2FV-01 2 86075136 86075136 T - ST3GAL5 Frame_Shift_Del p.V171Sfs*17 0.08 TCGA-EW-A2FV-01 2 86276067 86276067 A - POLR1A Frame_Shift_Del p.F858Lfs*3 0.08 TCGA-EW-A2FV-01 2 86831248 86831248 C - RNF103 Frame_Shift_Del p.R593Gfs*17 0.08 TCGA-EW-A2FV-01 2 86849944 86849944 A - RNF103-CHMP3 Intron 0.09 TCGA-EW-A2FV-01 2 88890023 88890023 A - EIF2AK3 Frame_Shift_Del p.L368* 0.10 TCGA-EW-A2FV-01 2 88913303 88913303 T - EIF2AK3 Frame_Shift_Del p.K126Sfs*27 0.09 TCGA-EW-A2FV-01 2 89103961 89103961 A - ANKRD36BP2 RNA 0.11 TCGA-EW-A2FV-01 2 90060879 90060879 G - IGKV6D-21 Frame_Shift_Del p.V77Sfs*? 0.11 TCGA-EW-A2FV-01 2 9460431 9460431 T - ASAP2 Frame_Shift_Del p.F146Lfs*12 0.08 TCGA-EW-A2FV-01 2 95691569 95691569 C - MAL Frame_Shift_Del p.L12Cfs*44 0.11 TCGA-EW-A2FV-01 2 95713804 95713804 C - MAL Frame_Shift_Del p.T66Pfs*4 0.08 TCGA-EW-A2FV-01 2 95774052 95774052 C - MRPS5 Frame_Shift_Del p.E169Rfs*4 0.09 TCGA-EW-A2FV-01 2 9582091 9582091 G - CPSF3 Frame_Shift_Del p.T362Hfs*23 0.08 TCGA-EW-A2FV-01 2 95944772 95944772 G - PROM2 Frame_Shift_Del p.T386Hfs*144 0.09 TCGA-EW-A2FV-01 2 95954275 95954275 C - PROM2 Frame_Shift_Del p.S795Afs*38 0.09 TCGA-EW-A2FV-01 2 96804159 96804159 C - ASTL Frame_Shift_Del p.G6Vfs*15 0.10 TCGA-EW-A2FV-01 2 9683295 9683295 A - ADAM17 Frame_Shift_Del p.S73Qfs*3 0.10 TCGA-EW-A2FV-01 2 96932092 96932092 A - CIAO1 Frame_Shift_Del p.K2Rfs*66 0.08 TCGA-EW-A2FV-01 2 96934256 96934256 G - CIAO1 Frame_Shift_Del p.V185Yfs*79 0.09 TCGA-EW-A2FV-01 2 96958782 96958782 T - SNRNP200 Frame_Shift_Del p.A697Lfs*8 0.08 TCGA-EW-A2FV-01 2 96992699 96992699 A - ITPRIPL1 Frame_Shift_Del p.N119Tfs*143 0.11 TCGA-EW-A2FV-01 2 96992728 96992728 T - ITPRIPL1 Frame_Shift_Del p.L130Sfs*132 0.11 TCGA-EW-A2FV-01 2 97276481 97276481 C - KANSL3 Frame_Shift_Del p.G434Efs*8 0.10 TCGA-EW-A2FV-01 2 97359681 97359681 C - FER1L5 RNA 0.09 TCGA-EW-A2FV-01 2 98373701 98373701 G - TMEM131 Frame_Shift_Del p.P1838Lfs*72 0.09 TCGA-EW-A2FV-01 2 98378564 98378564 G - TMEM131 Frame_Shift_Del p.P1608Qfs*27 0.12 TCGA-EW-A2FV-01 2 98408855 98408855 T - TMEM131 Frame_Shift_Del p.S1380Afs*12 0.11 TCGA-EW-A2FV-01 2 98435162 98435162 T - TMEM131 Frame_Shift_Del p.N366Mfs*4 0.09 TCGA-EW-A2FV-01 2 99237896 99237896 A - MGAT4A 3'UTR 0.09 TCGA-EW-A2FV-01 3 100013941 100013941 T - TBC1D23 Frame_Shift_Del p.F205Lfs*29 0.09 TCGA-EW-A2FV-01 3 100096704 100096704 T - TOMM70A Frame_Shift_Del p.I313Sfs*2 0.09 TCGA-EW-A2FV-01 3 10050174 10050174 G - AC022007.5 RNA 0.14 TCGA-EW-A2FV-01 3 100566463 100566463 G - ABI3BP Frame_Shift_Del p.P502Lfs*16 0.08 TCGA-EW-A2FV-01 3 10116267 10116267 T - FANCD2 Frame_Shift_Del p.F925Sfs*17 0.12 TCGA-EW-A2FV-01 3 101304313 101304313 A - PCNP Frame_Shift_Del p.T106Lfs*4 0.08 TCGA-EW-A2FV-01 3 101575955 101575955 T - NFKBIZ Frame_Shift_Del p.E622Kfs*21 0.08 TCGA-EW-A2FV-01 3 10382333 10382333 G - ATP2B2 Frame_Shift_Del p.S992Qfs*13 0.09 TCGA-EW-A2FV-01 3 105422969 105422969 G - CBLB Frame_Shift_Del p.A487Pfs*16 0.08 TCGA-EW-A2FV-01 3 105439038 105439038 G - CBLB Frame_Shift_Del p.I421* 0.11 TCGA-EW-A2FV-01 3 107491843 107491843 A - BBX Frame_Shift_Del p.K426Rfs*11 0.09 TCGA-EW-A2FV-01 3 107941121 107941121 C - IFT57 Frame_Shift_Del p.V17Cfs*27 0.10 TCGA-EW-A2FV-01 3 108285444 108285444 T - KIAA1524 Frame_Shift_Del p.I439Sfs*2 0.09 TCGA-EW-A2FV-01 3 108324236 108324236 A - DZIP3 5'UTR 0.09 TCGA-EW-A2FV-01 3 108373113 108373113 T - DZIP3 Frame_Shift_Del p.F719Sfs*12 0.08 TCGA-EW-A2FV-01 3 108407728 108407728 A - DZIP3 Frame_Shift_Del p.N1159Ifs*20 0.08 TCGA-EW-A2FV-01 3 108639372 108639372 T - GUCA1C Frame_Shift_Del p.M89Wfs*5 0.11 TCGA-EW-A2FV-01 3 108819314 108819314 T - MORC1 Frame_Shift_Del p.K88Nfs*6 0.09 TCGA-EW-A2FV-01 3 111312520 111312520 T - ZBED2 Frame_Shift_Del p.R177Gfs*15 0.09 TCGA-EW-A2FV-01 3 111671443 111671443 A - PHLDB2 Frame_Shift_Del p.K887Nfs*9 0.08 TCGA-EW-A2FV-01 3 111760860 111760860 G - TMPRSS7 Frame_Shift_Del p.E20Nfs*12 0.09 TCGA-EW-A2FV-01 3 111936362 111936362 T - SLC9C1 Frame_Shift_Del p.T573Qfs*35 0.08 TCGA-EW-A2FV-01 3 112255375 112255375 A - ATG3 Frame_Shift_Del p.I247Mfs*23 0.08 TCGA-EW-A2FV-01 3 113374607 113374607 A - KIAA2018 Frame_Shift_Del p.Q1976Rfs*47 0.08 TCGA-EW-A2FV-01 3 113374693 113374693 C - KIAA2018 Frame_Shift_Del p.V1946Lfs*77 0.10 TCGA-EW-A2FV-01 3 11356905 11356905 A - ATG7 Frame_Shift_Del p.N206Tfs*22 0.09 TCGA-EW-A2FV-01 3 113623031 113623031 A - GRAMD1C Frame_Shift_Del p.K235Nfs*31 0.10 TCGA-EW-A2FV-01 3 113720491 113720491 T - KIAA1407 Frame_Shift_Del p.K705Rfs*14 0.09 TCGA-EW-A2FV-01 3 114057988 114057988 G - ZBTB20 Frame_Shift_Del p.P697Qfs*38 0.12 TCGA-EW-A2FV-01 3 116163740 116163740 C - LSAMP Frame_Shift_Del p.D47Tfs*9 0.10 TCGA-EW-A2FV-01 3 118913103 118913103 A - UPK1B Frame_Shift_Del p.K170Nfs*24 0.08 TCGA-EW-A2FV-01 3 118917936 118917936 C - UPK1B Frame_Shift_Del p.R228Dfs*58 0.08 TCGA-EW-A2FV-01 3 1189671 1189671 T - CNTN6 5'UTR 0.10 TCGA-EW-A2FV-01 3 120489634 120489634 A - GTF2E1 Frame_Shift_Del p.D172Mfs*26 0.08 TCGA-EW-A2FV-01 3 121838287 121838287 A - CD86 Frame_Shift_Del p.I301Sfs*31 0.10 TCGA-EW-A2FV-01 3 122002889 122002889 G - CASR Frame_Shift_Del p.V707* 0.13 TCGA-EW-A2FV-01 3 122255121 122255121 T - PARP9 Frame_Shift_Del p.K693Nfs*7 0.09 TCGA-EW-A2FV-01 3 122418275 122418275 A - PARP14 Frame_Shift_Del p.M293Cfs*23 0.09 TCGA-EW-A2FV-01 3 122474168 122474168 A - HSPBAP1 Frame_Shift_Del p.L227* 0.11 TCGA-EW-A2FV-01 3 122575175 122575175 T - DIRC2 Frame_Shift_Del p.W323Gfs*3 0.09 TCGA-EW-A2FV-01 3 123003525 123003525 C - ADCY5 Frame_Shift_Del p.G1239Afs*11 0.11 TCGA-EW-A2FV-01 3 123376182 123376182 C - MYLK Frame_Shift_Del p.G1360Afs*22 0.09 TCGA-EW-A2FV-01 3 124397075 124397075 G - KALRN Frame_Shift_Del p.A683Rfs*50 0.11 TCGA-EW-A2FV-01 3 124420921 124420921 A - KALRN Frame_Shift_Del p.N982Ifs*9 0.08 TCGA-EW-A2FV-01 3 124456847 124456847 A - UMPS Frame_Shift_Del p.K249Rfs*21 0.12 TCGA-EW-A2FV-01 3 124567275 124567275 G A ITGB5 Silent p.L164L 0.17 TCGA-EW-A2FV-01 3 124728565 124728565 T - HEG1 Frame_Shift_Del p.I1061Yfs*9 0.08 TCGA-EW-A2FV-01 3 124731676 124731676 G - HEG1 Frame_Shift_Del p.P916Lfs*2 0.11 TCGA-EW-A2FV-01 3 125250796 125250796 T - OSBPL11 Frame_Shift_Del p.H696Lfs*44 0.09 TCGA-EW-A2FV-01 3 125271124 125271124 A - OSBPL11 Frame_Shift_Del p.Y519Mfs*11 0.11 TCGA-EW-A2FV-01 3 125647382 125647382 A - ALG1L 3'Flank 0.09 TCGA-EW-A2FV-01 3 125690943 125690943 A - ROPN1B Frame_Shift_Del p.M17Cfs*2 0.09 TCGA-EW-A2FV-01 3 125854446 125854446 G - ALDH1L1 Frame_Shift_Del p.K479Rfs*20 0.08 TCGA-EW-A2FV-01 3 125879699 125879699 G - ALDH1L1 Frame_Shift_Del p.L52Wfs*53 0.10 TCGA-EW-A2FV-01 3 126155233 126155233 T - CCDC37 Frame_Shift_Del p.F609Sfs*9 0.08 TCGA-EW-A2FV-01 3 126291123 126291123 T - TXNRD3NB Frame_Shift_Del p.K88Nfs*32 0.08 TCGA-EW-A2FV-01 3 127317255 127317255 T - MCM2 5'UTR 0.10 TCGA-EW-A2FV-01 3 127395876 127395876 G - ABTB1 Frame_Shift_Del p.D199Tfs*25 0.09 TCGA-EW-A2FV-01 3 127396605 127396605 C - ABTB1 Frame_Shift_Del p.P318Qfs*36 0.08 TCGA-EW-A2FV-01 3 127413897 127413897 C - MGLL Frame_Shift_Del p.G246Afs*18 0.10 TCGA-EW-A2FV-01 3 128127117 128127117 C - EEFSEC 3'UTR 0.12 TCGA-EW-A2FV-01 3 128369523 128369523 C - RPN1 Frame_Shift_Del p.D41Tfs*2 0.24 TCGA-EW-A2FV-01 3 130116570 130116570 G T COL6A5 Missense_Mutation p.A1238S 0.18 tolerated(0.11) benign(0.434) TCGA-EW-A2FV-01 3 130686016 130686016 G - ATP2C1 Frame_Shift_Del p.E419Kfs*2 0.08 TCGA-EW-A2FV-01 3 131219296 131219296 T - MRPL3 Frame_Shift_Del p.K116Sfs*15 0.08 TCGA-EW-A2FV-01 3 132207223 132207223 C - DNAJC13 Frame_Shift_Del p.R1118Afs*4 0.09 TCGA-EW-A2FV-01 3 132384828 132384828 A - UBA5 Frame_Shift_Del p.I71Sfs*6 0.08 TCGA-EW-A2FV-01 3 132390657 132390657 G - UBA5 Frame_Shift_Del p.V207Sfs*13 0.09 TCGA-EW-A2FV-01 3 132406004 132406004 T - NPHP3 Frame_Shift_Del p.G1065Afs*16 0.08 TCGA-EW-A2FV-01 3 132423084 132423084 A - NPHP3 Frame_Shift_Del p.Q495Sfs*22 0.09 TCGA-EW-A2FV-01 3 132438636 132438636 T - NPHP3 Frame_Shift_Del p.E145Kfs*4 0.08 TCGA-EW-A2FV-01 3 133485154 133485154 G - TF Frame_Shift_Del p.A455Lfs*9 0.12 TCGA-EW-A2FV-01 3 133560477 133560477 T - RAB6B Frame_Shift_Del p.T54Pfs*25 0.09 TCGA-EW-A2FV-01 3 13360629 13360629 C - NUP210 Frame_Shift_Del p.D1836Ifs*87 0.10 TCGA-EW-A2FV-01 3 133673948 133673948 G - SLCO2A1 Frame_Shift_Del p.Q163Rfs*10 0.10 TCGA-EW-A2FV-01 3 134086418 134086418 T - AMOTL2 Frame_Shift_Del p.N321Mfs*42 0.10 TCGA-EW-A2FV-01 3 13432720 13432720 T - NUP210 Frame_Shift_Del p.N175Mfs*37 0.09 TCGA-EW-A2FV-01 3 134670617 134670617 T - EPHB1 Frame_Shift_Del p.Q178Rfs*33 0.10 TCGA-EW-A2FV-01 3 136667163 136667163 A - NCK1 Frame_Shift_Del p.E336Rfs*18 0.09 TCGA-EW-A2FV-01 3 137786382 137786382 G - DZIP1L Frame_Shift_Del p.Q665Rfs*18 0.12 TCGA-EW-A2FV-01 3 137888974 137888974 T - DBR1 Frame_Shift_Del p.N155Ifs*7 0.10 TCGA-EW-A2FV-01 3 138186950 138186950 T - ESYT3 Frame_Shift_Del p.F408Lfs*3 0.09 TCGA-EW-A2FV-01 3 138227284 138227284 A - CEP70 Frame_Shift_Del p.Q350Rfs*17 0.09 TCGA-EW-A2FV-01 3 139173585 139173585 C - RBP2 Frame_Shift_Del p.D114Tfs*7 0.10 TCGA-EW-A2FV-01 3 140277606 140277606 T - CLSTN2 Frame_Shift_Del p.F650Lfs*7 0.11 TCGA-EW-A2FV-01 3 140785631 140785631 G - SPSB4 Frame_Shift_Del p.G229Afs*9 0.13 TCGA-EW-A2FV-01 3 1414068 1414068 C - CNTN6 Frame_Shift_Del p.S528Pfs*15 0.09 TCGA-EW-A2FV-01 3 14163478 14163478 C - CHCHD4 5'UTR 0.11 TCGA-EW-A2FV-01 3 14220092 14220095 CTTC TTG LSM3 5'UTR 0.12 TCGA-EW-A2FV-01 3 142681107 142681107 C - PAQR9 Frame_Shift_Del p.V358Sfs*6 0.09 TCGA-EW-A2FV-01 3 142775212 142775212 A - U2SURP Frame_Shift_Del p.K1005Nfs*30 0.11 TCGA-EW-A2FV-01 3 142985642 142985642 G - SLC9A9 Frame_Shift_Del p.Q614Rfs*31 0.08 TCGA-EW-A2FV-01 3 143292945 143292945 C - SLC9A9 Frame_Shift_Del p.A329Lfs*4 0.11 TCGA-EW-A2FV-01 3 14558674 14558674 A - GRIP2 RNA 0.11 TCGA-EW-A2FV-01 3 145828182 145828182 T - PLOD2 Frame_Shift_Del p.K131Rfs*20 0.10 TCGA-EW-A2FV-01 3 146167093 146167093 A - PLSCR2 Frame_Shift_Del p.L255* 0.09 TCGA-EW-A2FV-01 3 14709649 14709649 A - CCDC174 Frame_Shift_Del p.K306Nfs*39 0.12 TCGA-EW-A2FV-01 3 14861204 14861204 C - FGD5 Frame_Shift_Del p.E212Rfs*128 0.11 TCGA-EW-A2FV-01 3 148895674 148895674 T - CP Frame_Shift_Del p.I991* 0.08 TCGA-EW-A2FV-01 3 149087681 149087681 A - TM4SF1 Intron 0.09 TCGA-EW-A2FV-01 3 149245671 149245671 G - WWTR1 Frame_Shift_Del p.P286Qfs*3 0.13 TCGA-EW-A2FV-01 3 149485161 149485161 T - ANKUB1 Frame_Shift_Del p.I430Lfs*12 0.10 TCGA-EW-A2FV-01 3 149485375 149485375 G - ANKUB1 Frame_Shift_Del p.S359Pfs*53 0.09 TCGA-EW-A2FV-01 3 150400040 150400040 A - FAM194A Frame_Shift_Del p.S283Lfs*22 0.08 TCGA-EW-A2FV-01 3 150400067 150400067 A - FAM194A Frame_Shift_Del p.C274Vfs*5 0.10 TCGA-EW-A2FV-01 3 151046546 151046546 T - P2RY13 Frame_Shift_Del p.I100Sfs*22 0.14 TCGA-EW-A2FV-01 3 151112478 151112478 C - MED12L Frame_Shift_Del p.P1847Qfs*19 0.09 TCGA-EW-A2FV-01 3 153943609 153943609 T - ARHGEF26 Intron 0.08 TCGA-EW-A2FV-01 3 154002695 154002695 T - DHX36 Frame_Shift_Del p.M705* 0.13 TCGA-EW-A2FV-01 3 15491975 15491975 G - COLQ 3'UTR 0.08 TCGA-EW-A2FV-01 3 155203351 155203351 T - PLCH1 Frame_Shift_Del p.K931Rfs*12 0.08 TCGA-EW-A2FV-01 3 15643034 15643034 A - HACL1 5'UTR 0.13 TCGA-EW-A2FV-01 3 157296123 157296123 T - C3orf55 Intron 0.12 TCGA-EW-A2FV-01 3 158408011 158408011 C - GFM1 Frame_Shift_Del p.P657Qfs*8 0.09 TCGA-EW-A2FV-01 3 160021747 160021747 A - IFT80 Frame_Shift_Del p.F369Lfs*10 0.09 TCGA-EW-A2FV-01 3 160227639 160227639 T - KPNA4 Frame_Shift_Del p.E387Kfs*6 0.09 TCGA-EW-A2FV-01 3 161064097 161064097 A - SPTSSB Frame_Shift_Del p.V6* 0.10 TCGA-EW-A2FV-01 3 16302289 16302289 T - DPH3 Frame_Shift_Del p.E78Nfs*2 0.08 TCGA-EW-A2FV-01 3 167189395 167189395 T - SERPINI2 Frame_Shift_Del p.K76Nfs*14 0.08 TCGA-EW-A2FV-01 3 167189437 167189437 T - SERPINI2 Frame_Shift_Del p.A63Pfs*9 0.09 TCGA-EW-A2FV-01 3 167272493 167272493 T - WDR49 Frame_Shift_Del p.I249Yfs*80 0.08 TCGA-EW-A2FV-01 3 169486007 169486007 G - ACTRT3 Frame_Shift_Del p.P111Hfs*42 0.12 TCGA-EW-A2FV-01 3 170015145 170015145 G - PRKCI Frame_Shift_Del p.G518Dfs*12 0.10 TCGA-EW-A2FV-01 3 170846527 170846527 G - TNIK Frame_Shift_Del p.M584Cfs*13 0.13 TCGA-EW-A2FV-01 3 172064190 172064190 T - FNDC3B Frame_Shift_Del p.S776Lfs*9 0.09 TCGA-EW-A2FV-01 3 172115222 172115222 C - FNDC3B Frame_Shift_Del p.I1192Ffs*11 0.10 TCGA-EW-A2FV-01 3 17333434 17333434 C - TBC1D5 Frame_Shift_Del p.D400Mfs*5 0.10 TCGA-EW-A2FV-01 3 175165090 175165090 A - NAALADL2 Frame_Shift_Del p.K389Nfs*2 0.09 TCGA-EW-A2FV-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-EW-A2FV-01 3 179319519 179319519 A - MRPL47 Frame_Shift_Del p.W102Gfs*5 0.09 TCGA-EW-A2FV-01 3 180372686 180372686 T - CCDC39 Frame_Shift_Del p.K265Rfs*27 0.09 TCGA-EW-A2FV-01 3 181430325 181430325 G - SOX2 Frame_Shift_Del p.A60Pfs*43 0.10 TCGA-EW-A2FV-01 3 182662896 182662896 T - DCUN1D1 Frame_Shift_Del p.S256Vfs*11 0.12 TCGA-EW-A2FV-01 3 182871654 182871654 G - LAMP3 Frame_Shift_Del p.P192Qfs*40 0.11 TCGA-EW-A2FV-01 3 183017841 183017841 T - MCF2L2 Frame_Shift_Del p.K419Nfs*5 0.08 TCGA-EW-A2FV-01 3 183027522 183027522 T - MCF2L2 Frame_Shift_Del p.K365Nfs*59 0.12 TCGA-EW-A2FV-01 3 183210422 183210422 C - KLHL6 Frame_Shift_Del p.G475Efs*24 0.08 TCGA-EW-A2FV-01 3 183584434 183584434 T - PARL Frame_Shift_Del p.E148Kfs*15 0.08 TCGA-EW-A2FV-01 3 183670873 183670873 C - ABCC5 Splice_Site p.X889_splice 0.10 TCGA-EW-A2FV-01 3 183967592 183967592 C - ECE2 Frame_Shift_Del p.Y39Tfs*14 0.15 TCGA-EW-A2FV-01 3 183978950 183978950 C - CAMK2N2 Frame_Shift_Del p.A42Pfs*17 0.13 TCGA-EW-A2FV-01 3 184003301 184003301 A - ECE2 Frame_Shift_Del p.K514Rfs*52 0.11 TCGA-EW-A2FV-01 3 184070896 184070896 C - CLCN2 Frame_Shift_Del p.E690Rfs*6 0.09 TCGA-EW-A2FV-01 3 184100183 184100183 G - CHRD Frame_Shift_Del p.V237Cfs*23 0.09 TCGA-EW-A2FV-01 3 184586811 184586811 A - VPS8 Frame_Shift_Del p.A530Qfs*2 0.09 TCGA-EW-A2FV-01 3 184588563 184588563 A - VPS8 Frame_Shift_Del p.I570Sfs*3 0.12 TCGA-EW-A2FV-01 3 185184631 185184631 A - MAP3K13 Frame_Shift_Del p.K509Rfs*25 0.10 TCGA-EW-A2FV-01 3 185364883 185364883 G - IGF2BP2 Frame_Shift_Del p.P546Lfs*12 0.08 TCGA-EW-A2FV-01 3 185393638 185393638 T - IGF2BP2 Frame_Shift_Del p.E293Kfs*5 0.09 TCGA-EW-A2FV-01 3 188406644 188406644 G - LPP Intron 0.10 TCGA-EW-A2FV-01 3 188478039 188478039 A - LPP Frame_Shift_Del p.K461Rfs*43 0.13 TCGA-EW-A2FV-01 3 189607267 189607267 T - TP63 Frame_Shift_Del p.I549Mfs*5 0.08 TCGA-EW-A2FV-01 3 190573651 190573651 C - GMNC Frame_Shift_Del p.K147Rfs*49 0.10 TCGA-EW-A2FV-01 3 192516480 192516480 C - MB21D2 Frame_Shift_Del p.E391Rfs*34 0.09 TCGA-EW-A2FV-01 3 194063225 194063225 A - CPN2 Frame_Shift_Del p.F69Lfs*7 0.10 TCGA-EW-A2FV-01 3 194081060 194081060 G - LRRC15 Frame_Shift_Del p.P244Lfs*44 0.10 TCGA-EW-A2FV-01 3 194386992 194386992 G - LSG1 Frame_Shift_Del p.P125Qfs*13 0.09 TCGA-EW-A2FV-01 3 194947442 194947442 G - XXYLT1 Frame_Shift_Del p.E218Rfs*10 0.08 TCGA-EW-A2FV-01 3 195013028 195013028 T - ACAP2 Frame_Shift_Del p.N640Tfs*11 0.08 TCGA-EW-A2FV-01 3 195594314 195594314 G - TNK2 Frame_Shift_Del p.P1015Rfs*169 0.09 TCGA-EW-A2FV-01 3 195613869 195613869 T - TNK2 Frame_Shift_Del p.K134Nfs*6 0.15 TCGA-EW-A2FV-01 3 196533552 196533552 A - PAK2 Frame_Shift_Del p.K191Nfs*8 0.11 TCGA-EW-A2FV-01 3 197640792 197640792 T - IQCG Frame_Shift_Del p.K283Sfs*18 0.08 TCGA-EW-A2FV-01 3 197665432 197665432 T - IQCG Frame_Shift_Del p.I168Ffs*11 0.12 TCGA-EW-A2FV-01 3 197687266 197687266 G - LMLN Frame_Shift_Del p.G59Afs*17 0.12 TCGA-EW-A2FV-01 3 21552435 21552435 T - ZNF385D Frame_Shift_Del p.K119Nfs*3 0.09 TCGA-EW-A2FV-01 3 24231696 24231696 T - THRB Frame_Shift_Del p.N51Mfs*25 0.09 TCGA-EW-A2FV-01 3 27233577 27233577 A - NEK10 Frame_Shift_Del p.F816Lfs*28 0.11 TCGA-EW-A2FV-01 3 29985705 29985705 C - RBMS3 Frame_Shift_Del p.Q354Kfs*5 0.09 TCGA-EW-A2FV-01 3 3188232 3188232 A - TRNT1 Frame_Shift_Del p.I245Ffs*7 0.08 TCGA-EW-A2FV-01 3 32570015 32570015 G - DYNC1LI1 Frame_Shift_Del p.P462Lfs*3 0.09 TCGA-EW-A2FV-01 3 32754787 32754787 A - CNOT10 Frame_Shift_Del p.A228Lfs*8 0.09 TCGA-EW-A2FV-01 3 33055699 33055699 C - GLB1 Frame_Shift_Del p.G528Dfs*72 0.09 TCGA-EW-A2FV-01 3 33441684 33441684 A - UBP1 Frame_Shift_Del p.S393Qfs*6 0.10 TCGA-EW-A2FV-01 3 33450770 33450770 T - UBP1 Frame_Shift_Del p.E260Kfs*15 0.11 TCGA-EW-A2FV-01 3 35770929 35770929 G - ARPP21 Frame_Shift_Del p.G421Afs*37 0.11 TCGA-EW-A2FV-01 3 36778903 36778903 T - DCLK3 Frame_Shift_Del p.K416Nfs*14 0.13 TCGA-EW-A2FV-01 3 37357010 37357010 A - GOLGA4 Frame_Shift_Del p.T469Qfs*13 0.09 TCGA-EW-A2FV-01 3 37368617 37368617 A - GOLGA4 Frame_Shift_Del p.E1771Kfs*7 0.08 TCGA-EW-A2FV-01 3 37458959 37458959 T - C3orf35 Frame_Shift_Del p.L70Wfs*52 0.09 TCGA-EW-A2FV-01 3 37695209 37695209 T - ITGA9 Frame_Shift_Del p.F616Lfs*32 0.10 TCGA-EW-A2FV-01 3 37845344 37845344 C - ITGA9 Frame_Shift_Del p.R975Vfs*113 0.08 TCGA-EW-A2FV-01 3 37845361 37845361 G - ITGA9 Frame_Shift_Del p.W981Gfs*107 0.10 TCGA-EW-A2FV-01 3 38105375 38105375 T - DLEC1 Frame_Shift_Del p.F381Sfs*13 0.08 TCGA-EW-A2FV-01 3 38170838 38170838 T - ACAA1 Frame_Shift_Del p.N163Ifs*6 0.09 TCGA-EW-A2FV-01 3 38524800 38524800 C - ACVR2B Frame_Shift_Del p.P507Lfs*11 0.09 TCGA-EW-A2FV-01 3 38592206 38592206 T - SCN5A Frame_Shift_Del p.K1886Rfs*36 0.08 TCGA-EW-A2FV-01 3 38597244 38597244 C - SCN5A Frame_Shift_Del p.G1482Afs*6 0.08 TCGA-EW-A2FV-01 3 38640511 38640511 G - SCN5A Frame_Shift_Del p.Q641Rfs*3 0.10 TCGA-EW-A2FV-01 3 39140873 39140873 G - GORASP1 Frame_Shift_Del p.P296Hfs*38 0.09 TCGA-EW-A2FV-01 3 39159568 39159568 A - TTC21A Frame_Shift_Del p.D244Mfs*11 0.09 TCGA-EW-A2FV-01 3 41290979 41290979 C - ULK4 Splice_Site p.X1255_splice 0.10 TCGA-EW-A2FV-01 3 42201875 42201875 G - TRAK1 Intron 0.09 TCGA-EW-A2FV-01 3 42445561 42445561 T - LYZL4 Frame_Shift_Del p.G117Efs*? 0.08 TCGA-EW-A2FV-01 3 42906161 42906161 T - ACKR2 Frame_Shift_Del p.F57Lfs*30 0.09 TCGA-EW-A2FV-01 3 44926886 44926886 A - TGM4 Frame_Shift_Del p.T31Rfs*18 0.13 TCGA-EW-A2FV-01 3 46621278 46621278 G - TDGF1 Frame_Shift_Del p.S93Pfs*61 0.10 TCGA-EW-A2FV-01 3 46747382 46747382 T - TMIE Frame_Shift_Del p.F66Sfs*76 0.08 TCGA-EW-A2FV-01 3 46944921 46944921 C - PTH1R Frame_Shift_Del p.R521Afs*96 0.17 TCGA-EW-A2FV-01 3 47058524 47058524 T - SETD2 3'UTR 0.10 TCGA-EW-A2FV-01 3 47058660 47058660 T - SETD2 Frame_Shift_Del p.T2540Pfs*24 0.08 TCGA-EW-A2FV-01 3 47165780 47165780 T - SETD2 Frame_Shift_Del p.M116* 0.10 TCGA-EW-A2FV-01 3 4718369 4718369 T - ITPR1 Frame_Shift_Del p.L937Cfs*3 0.08 TCGA-EW-A2FV-01 3 47281271 47281271 C - KIF9 Intron 0.11 TCGA-EW-A2FV-01 3 47308710 47308710 T - KIF9 Frame_Shift_Del p.N212Tfs*13 0.08 TCGA-EW-A2FV-01 3 47449403 47449403 G - PTPN23 Frame_Shift_Del p.E382Rfs*2 0.08 TCGA-EW-A2FV-01 3 47718222 47718222 G - SMARCC1 Frame_Shift_Del p.P541Rfs*19 0.13 TCGA-EW-A2FV-01 3 47884664 47884664 C - DHX30 Frame_Shift_Del p.M288* 0.11 TCGA-EW-A2FV-01 3 47890261 47890261 G - DHX30 Frame_Shift_Del p.D909Tfs*16 0.09 TCGA-EW-A2FV-01 3 47950691 47950691 T - MAP4 Intron 0.10 TCGA-EW-A2FV-01 3 4829670 4829670 C - ITPR1 Frame_Shift_Del p.V2205Cfs*8 0.08 TCGA-EW-A2FV-01 3 48298216 48298216 G - ZNF589 Intron 0.10 TCGA-EW-A2FV-01 3 48445853 48445853 G A PLXNB1 3'UTR 0.19 TCGA-EW-A2FV-01 3 48670924 48670924 C - SLC26A6 Frame_Shift_Del p.W56Cfs*43 0.12 TCGA-EW-A2FV-01 3 49004648 49004648 T - ARIH2 Frame_Shift_Del p.C161Afs*46 0.12 TCGA-EW-A2FV-01 3 49052683 49052683 G - WDR6 Frame_Shift_Del p.G1141Vfs*44 0.10 TCGA-EW-A2FV-01 3 49069673 49069673 T - QRICH1 Frame_Shift_Del p.N694Ifs*6 0.09 TCGA-EW-A2FV-01 3 49137503 49137503 A - QARS Frame_Shift_Del p.S396Qfs*9 0.11 TCGA-EW-A2FV-01 3 49568780 49568780 C - DAG1 Frame_Shift_Del p.P280Lfs*103 0.09 TCGA-EW-A2FV-01 3 49569310 49569310 C - DAG1 Frame_Shift_Del p.R457Gfs*50 0.09 TCGA-EW-A2FV-01 3 49662668 49662668 C - BSN Frame_Shift_Del p.L164Ffs*49 0.09 TCGA-EW-A2FV-01 3 49693457 49693457 G - BSN Frame_Shift_Del p.G2157Afs*37 0.09 TCGA-EW-A2FV-01 3 49714101 49714101 C - APEH Frame_Shift_Del p.R269Gfs*39 0.09 TCGA-EW-A2FV-01 3 49719187 49719187 C - APEH Frame_Shift_Del p.P491Lfs*44 0.10 TCGA-EW-A2FV-01 3 49719800 49719800 G - APEH Frame_Shift_Del p.G542Afs*19 0.08 TCGA-EW-A2FV-01 3 49734887 49734887 G - RNF123 Frame_Shift_Del 0.08 TCGA-EW-A2FV-01 3 49845344 49845344 C - UBA7 Frame_Shift_Del p.G847Afs*26 0.16 TCGA-EW-A2FV-01 3 50197087 50197087 C - SEMA3F Frame_Shift_Del p.L12Yfs*2 0.09 TCGA-EW-A2FV-01 3 5022019 5022019 A - BHLHE40 Frame_Shift_Del p.K63Rfs*13 0.10 TCGA-EW-A2FV-01 3 50256348 50256348 C - SLC38A3 RNA 0.08 TCGA-EW-A2FV-01 3 50316558 50316558 C - LSMEM2 Frame_Shift_Del p.D7Tfs*19 0.08 TCGA-EW-A2FV-01 3 50431574 50431574 A - CACNA2D2 Frame_Shift_Del p.F144Sfs*44 0.09 TCGA-EW-A2FV-01 3 51400028 51400028 G - DOCK3 Frame_Shift_Del p.S1739Tfs*7 0.15 TCGA-EW-A2FV-01 3 51418516 51418516 C - DOCK3 Frame_Shift_Del p.Q1875Sfs*22 0.11 TCGA-EW-A2FV-01 3 51624458 51624458 G - RAD54L2 Frame_Shift_Del p.S9Afs*85 0.08 TCGA-EW-A2FV-01 3 51937067 51937067 T - IQCF1 Frame_Shift_Del p.E15Kfs*15 0.10 TCGA-EW-A2FV-01 3 51937086 51937086 T - IQCF1 Frame_Shift_Del p.K8Rfs*22 0.12 TCGA-EW-A2FV-01 3 52294459 52294459 A - WDR82 Frame_Shift_Del p.F162Sfs*59 0.11 TCGA-EW-A2FV-01 3 52360886 52360886 C - DNAH1 Frame_Shift_Del p.I241Sfs*5 0.09 TCGA-EW-A2FV-01 3 52437237 52437237 C - BAP1 Frame_Shift_Del p.V603Sfs*14 0.08 TCGA-EW-A2FV-01 3 52443613 52443613 C - BAP1 Frame_Shift_Del p.V27Cfs*45 0.08 TCGA-EW-A2FV-01 3 52475659 52475659 C - SEMA3G Frame_Shift_Del p.A200Pfs*2 0.10 TCGA-EW-A2FV-01 3 52537054 52537054 C - STAB1 Frame_Shift_Del p.Q209Sfs*41 0.13 TCGA-EW-A2FV-01 3 52541671 52541671 C - STAB1 Frame_Shift_Del p.N680Tfs*3 0.12 TCGA-EW-A2FV-01 3 52544174 52544174 G - STAB1 Frame_Shift_Del p.G851Afs*62 0.11 TCGA-EW-A2FV-01 3 52547917 52547917 G - STAB1 Frame_Shift_Del p.D1124Mfs*106 0.09 TCGA-EW-A2FV-01 3 52551391 52551391 C - STAB1 Frame_Shift_Del p.T1517Lfs*74 0.09 TCGA-EW-A2FV-01 3 52582181 52582181 T - PBRM1 Frame_Shift_Del p.A1551Pfs*15 0.08 TCGA-EW-A2FV-01 3 52740825 52740825 A - SPCS1 Frame_Shift_Del p.Y105Sfs*14 0.08 TCGA-EW-A2FV-01 3 53125927 53125927 T - RFT1 Frame_Shift_Del p.M540* 0.11 TCGA-EW-A2FV-01 3 53223082 53223082 G - PRKCD Frame_Shift_Del p.G522Afs*2 0.12 TCGA-EW-A2FV-01 3 53837586 53837586 C - CACNA1D Frame_Shift_Del p.T1879Pfs*95 0.09 TCGA-EW-A2FV-01 3 53904154 53904154 T - ACTR8 Frame_Shift_Del p.K529Rfs*8 0.10 TCGA-EW-A2FV-01 3 53905301 53905301 G - ACTR8 Frame_Shift_Del p.L509Wfs*11 0.08 TCGA-EW-A2FV-01 3 53913997 53913997 T - ACTR8 Frame_Shift_Del p.K88Rfs*6 0.08 TCGA-EW-A2FV-01 3 55717866 55717866 C - ERC2 Frame_Shift_Del p.A957Hfs*17 0.11 TCGA-EW-A2FV-01 3 57294696 57294696 A - APPL1 Frame_Shift_Del p.N580Ifs*46 0.09 TCGA-EW-A2FV-01 3 57356478 57356478 T - DNAH12 Frame_Shift_Del p.M238* 0.12 TCGA-EW-A2FV-01 3 57401279 57401279 A - DNAH12 Frame_Shift_Del p.F1890Lfs*13 0.09 TCGA-EW-A2FV-01 3 58111351 58111351 A - FLNB Frame_Shift_Del p.N1315Tfs*24 0.09 TCGA-EW-A2FV-01 3 58139307 58139307 A - FLNB Frame_Shift_Del p.G2223Afs*102 0.10 TCGA-EW-A2FV-01 3 61548004 61548004 A - PTPRG Frame_Shift_Del p.I16Sfs*15 0.08 TCGA-EW-A2FV-01 3 62355928 62355928 G - FEZF2 Frame_Shift_Del p.L404* 0.11 TCGA-EW-A2FV-01 3 64606854 64606854 T - ADAMTS9 Frame_Shift_Del p.R917Dfs*21 0.09 TCGA-EW-A2FV-01 3 64607899 64607899 C - ADAMTS9 Frame_Shift_Del p.W887Cfs*51 0.09 TCGA-EW-A2FV-01 3 64635343 64635343 A - ADAMTS9 Frame_Shift_Del p.F525Lfs*11 0.19 TCGA-EW-A2FV-01 3 65342221 65342221 G - MAGI1 Frame_Shift_Del p.E1408Sfs*27 0.11 TCGA-EW-A2FV-01 3 69077430 69077430 C - TMF1 Frame_Shift_Del p.E871Kfs*3 0.10 TCGA-EW-A2FV-01 3 69244418 69244418 T - FRMD4B Frame_Shift_Del p.V445Lfs*24 0.11 TCGA-EW-A2FV-01 3 69990425 69990425 A - MITF Frame_Shift_Del p.S236Vfs*9 0.08 TCGA-EW-A2FV-01 3 78684975 78684975 T - ROBO1 Frame_Shift_Del p.E1108Kfs*15 0.08 TCGA-EW-A2FV-01 3 78987941 78987941 T - ROBO1 Frame_Shift_Del p.G105Efs*28 0.10 TCGA-EW-A2FV-01 3 8543630 8543630 A - LMCD1 Frame_Shift_Del p.K3Rfs*57 0.09 TCGA-EW-A2FV-01 3 8607310 8607310 C - LMCD1 Frame_Shift_Del p.R307Gfs*8 0.19 TCGA-EW-A2FV-01 3 9066952 9066952 A - SRGAP3 Frame_Shift_Del p.F557Lfs*24 0.11 TCGA-EW-A2FV-01 3 9100010 9100010 G - SRGAP3 Frame_Shift_Del p.H316Qfs*56 0.14 TCGA-EW-A2FV-01 3 9710468 9710468 T - MTMR14 Frame_Shift_Del p.F163Sfs*52 0.08 TCGA-EW-A2FV-01 3 97652539 97652539 T - CRYBG3 Frame_Shift_Del p.F801Lfs*21 0.09 TCGA-EW-A2FV-01 3 9783014 9783014 G - BRPF1 Frame_Shift_Del p.A583Pfs*25 0.09 TCGA-EW-A2FV-01 3 9862256 9862256 A - TTLL3 Frame_Shift_Del p.N330Tfs*85 0.09 TCGA-EW-A2FV-01 3 9944723 9944723 C - IL17RE Frame_Shift_Del p.R37Afs*156 0.10 TCGA-EW-A2FV-01 4 100203699 100235174 4:100203699-100235174 - ADH1A large deletion 0.08 TCGA-EW-A2FV-01 4 100205903 100205903 T - ADH1A Frame_Shift_Del p.N106Tfs*8 0.08 TCGA-EW-A2FV-01 4 100496033 100496033 G - MTTP 5'UTR 0.09 TCGA-EW-A2FV-01 4 100496086 100496086 T - MTTP Frame_Shift_Del p.L9Sfs*20 0.09 TCGA-EW-A2FV-01 4 103585864 103585864 T - MANBA Frame_Shift_Del p.N488Tfs*79 0.10 TCGA-EW-A2FV-01 4 103595219 103595219 A - MANBA Frame_Shift_Del p.F323Lfs*7 0.08 TCGA-EW-A2FV-01 4 104006561 104006561 T - BDH2 Frame_Shift_Del p.K159Nfs*45 0.14 TCGA-EW-A2FV-01 4 106819129 106819129 G - NPNT Frame_Shift_Del p.A49Lfs*72 0.08 TCGA-EW-A2FV-01 4 108535489 108535489 T - PAPSS1 Frame_Shift_Del p.G598Afs*17 0.09 TCGA-EW-A2FV-01 4 108935704 108935704 A - HADH Frame_Shift_Del p.N128Tfs*29 0.11 TCGA-EW-A2FV-01 4 108985530 108985530 T - LEF1 Frame_Shift_Del p.K376Rfs*19 0.08 TCGA-EW-A2FV-01 4 110618839 110618839 A - CASP6 Frame_Shift_Del p.W57Gfs*3 0.09 TCGA-EW-A2FV-01 4 110788957 110788957 T - LRIT3 Frame_Shift_Del p.C251Vfs*2 0.10 TCGA-EW-A2FV-01 4 114254309 114254309 T - ANK2 Frame_Shift_Del p.F1109Sfs*9 0.09 TCGA-EW-A2FV-01 4 114458515 114458515 C - CAMK2D Frame_Shift_Del p.D167Tfs*75 0.09 TCGA-EW-A2FV-01 4 118006431 118006431 A - TRAM1L1 Frame_Shift_Del p.F40Sfs*101 0.10 TCGA-EW-A2FV-01 4 119461528 119461528 C - CEP170P1 RNA 0.11 TCGA-EW-A2FV-01 4 119736803 119736803 G - SEC24D Frame_Shift_Del p.P159Hfs*112 0.11 TCGA-EW-A2FV-01 4 119948516 119948516 A - SYNPO2 Frame_Shift_Del p.G332Afs*38 0.09 TCGA-EW-A2FV-01 4 125592120 125592120 C - ANKRD50 Frame_Shift_Del p.G771Efs*4 0.08 TCGA-EW-A2FV-01 4 128625424 128625424 G - INTU Frame_Shift_Del p.S517Lfs*9 0.09 TCGA-EW-A2FV-01 4 128689949 128689949 T - SLC25A31 Frame_Shift_Del p.F227Sfs*6 0.08 TCGA-EW-A2FV-01 4 128814546 128814546 A - PLK4 Frame_Shift_Del p.M767Cfs*14 0.08 TCGA-EW-A2FV-01 4 13605204 13605204 T - BOD1L1 Frame_Shift_Del p.K1107Rfs*5 0.11 TCGA-EW-A2FV-01 4 13605272 13605272 T - BOD1L1 Frame_Shift_Del p.G1085Efs*5 0.08 TCGA-EW-A2FV-01 4 13616217 13616217 T - BOD1L1 Frame_Shift_Del p.E260Kfs*41 0.09 TCGA-EW-A2FV-01 4 140275224 140275224 A - NAA15 Frame_Shift_Del p.S355Afs*43 0.08 TCGA-EW-A2FV-01 4 141543416 141543416 T - TBC1D9 Frame_Shift_Del p.N1245Tfs*4 0.10 TCGA-EW-A2FV-01 4 141544018 141544018 G - TBC1D9 Frame_Shift_Del p.N1045Mfs*12 0.09 TCGA-EW-A2FV-01 4 142147961 142147961 A - ZNF330 Frame_Shift_Del p.K85Sfs*84 0.08 TCGA-EW-A2FV-01 4 142653934 142653934 A - IL15 Frame_Shift_Del p.N143Ifs*24 0.08 TCGA-EW-A2FV-01 4 143081569 143081569 G - INPP4B Frame_Shift_Del p.P502Qfs*2 0.09 TCGA-EW-A2FV-01 4 146059387 146059387 A - OTUD4 Frame_Shift_Del p.F782Sfs*2 0.09 TCGA-EW-A2FV-01 4 146767134 146767134 T - ZNF827 Frame_Shift_Del p.E752Kfs*48 0.09 TCGA-EW-A2FV-01 4 146823458 146823458 G - ZNF827 Frame_Shift_Del p.P318Rfs*77 0.09 TCGA-EW-A2FV-01 4 147561121 147561121 C - POU4F2 Frame_Shift_Del p.H132Tfs*14 0.09 TCGA-EW-A2FV-01 4 147561174 147561174 C - POU4F2 Frame_Shift_Del p.P149Rfs*48 0.14 TCGA-EW-A2FV-01 4 15009112 15009112 A - CPEB2 Frame_Shift_Del p.K616Nfs*9 0.09 TCGA-EW-A2FV-01 4 151114327 151114327 T - DCLK2 Frame_Shift_Del p.F266Lfs*26 0.10 TCGA-EW-A2FV-01 4 153268163 153268163 G - FBXW7 Frame_Shift_Del p.N216Mfs*23 0.12 TCGA-EW-A2FV-01 4 154315468 154315468 A - MND1 Frame_Shift_Del p.I112Lfs*12 0.09 TCGA-EW-A2FV-01 4 154507466 154507466 T - KIAA0922 Frame_Shift_Del p.L474* 0.09 TCGA-EW-A2FV-01 4 154519808 154519808 G - KIAA0922 Frame_Shift_Del p.G731Vfs*20 0.08 TCGA-EW-A2FV-01 4 15518295 15518295 C - CC2D2A Frame_Shift_Del p.I357Sfs*11 0.08 TCGA-EW-A2FV-01 4 155219031 155219031 T - DCHS2 Frame_Shift_Del p.L1692Sfs*2 0.11 TCGA-EW-A2FV-01 4 155241859 155241859 G - DCHS2 Frame_Shift_Del p.S1110Hfs*5 0.08 TCGA-EW-A2FV-01 4 155305575 155305575 C - DCHS2 Frame_Shift_Del p.G60Vfs*3 0.08 TCGA-EW-A2FV-01 4 15839781 15839781 A - CD38 Frame_Shift_Del p.N219Tfs*20 0.10 TCGA-EW-A2FV-01 4 159493903 159493903 G - RXFP1 Frame_Shift_Del p.N36Tfs*47 0.09 TCGA-EW-A2FV-01 4 162954800 162954800 T - FSTL5 Frame_Shift_Del p.N46Ifs*11 0.12 TCGA-EW-A2FV-01 4 16510264 16510264 T - LDB2 Frame_Shift_Del p.N262Ifs*29 0.10 TCGA-EW-A2FV-01 4 166418669 166418669 T - CPE Frame_Shift_Del p.F447Lfs*17 0.08 TCGA-EW-A2FV-01 4 166915653 166915653 T - TLL1 Frame_Shift_Del p.I162Ffs*5 0.10 TCGA-EW-A2FV-01 4 167656123 167656123 T - SPOCK3 Frame_Shift_Del p.D421Mfs*18 0.08 TCGA-EW-A2FV-01 4 167656140 167656140 T - SPOCK3 Frame_Shift_Del p.I415Lfs*24 0.08 TCGA-EW-A2FV-01 4 169188772 169188772 A - DDX60 Frame_Shift_Del p.F1000Lfs*10 0.09 TCGA-EW-A2FV-01 4 169227538 169227538 A - DDX60 Frame_Shift_Del p.S200Pfs*27 0.14 TCGA-EW-A2FV-01 4 170042069 170042069 A - SH3RF1 Frame_Shift_Del p.L473* 0.08 TCGA-EW-A2FV-01 4 170190001 170190001 A - SH3RF1 Frame_Shift_Del p.R122Gfs*9 0.10 TCGA-EW-A2FV-01 4 170459002 170459002 T - NEK1 Frame_Shift_Del p.K541Nfs*49 0.09 TCGA-EW-A2FV-01 4 170983086 170983086 A - AADAT Frame_Shift_Del p.L398* 0.09 TCGA-EW-A2FV-01 4 173942749 173942749 G - GALNTL6 Frame_Shift_Del p.N539Tfs*16 0.10 TCGA-EW-A2FV-01 4 174216926 174216926 C - GALNT7 Frame_Shift_Del p.D301Mfs*15 0.08 TCGA-EW-A2FV-01 4 178358610 178358610 C - AGA Frame_Shift_Del p.D191Ifs*21 0.10 TCGA-EW-A2FV-01 4 1808312 1808312 G - FGFR3 Frame_Shift_Del p.G694Afs*16 0.10 TCGA-EW-A2FV-01 4 1817423 1817423 C - LETM1 Frame_Shift_Del p.D680Mfs*12 0.09 TCGA-EW-A2FV-01 4 1827320 1827320 C - LETM1 Frame_Shift_Del p.E391Kfs*4 0.14 TCGA-EW-A2FV-01 4 184828069 184828069 G - STOX2 Frame_Shift_Del p.A43Pfs*11 0.09 TCGA-EW-A2FV-01 4 186320126 186320126 A - ANKRD37 Frame_Shift_Del p.V74Lfs*7 0.10 TCGA-EW-A2FV-01 4 186361783 186361783 T - C4orf47 Frame_Shift_Del p.S210Lfs*33 0.14 TCGA-EW-A2FV-01 4 186380641 186380641 T - CCDC110 Frame_Shift_Del p.N367Ifs*5 0.08 TCGA-EW-A2FV-01 4 186570742 186570742 A - SORBS2 Frame_Shift_Del p.S250Pfs*87 0.09 TCGA-EW-A2FV-01 4 187522523 187522523 T - FAT1 Frame_Shift_Del p.N3847Mfs*5 0.08 TCGA-EW-A2FV-01 4 187539243 187539243 C - FAT1 Frame_Shift_Del p.A2833Hfs*40 0.08 TCGA-EW-A2FV-01 4 189064978 189064978 T - TRIML1 Intron 0.10 TCGA-EW-A2FV-01 4 1993389 1993389 G - NELFA Frame_Shift_Del p.W100Gfs*9 0.09 TCGA-EW-A2FV-01 4 20597393 20597393 A - SLIT2 Frame_Shift_Del p.N1087Tfs*9 0.08 TCGA-EW-A2FV-01 4 20733667 20733667 C - KCNIP4 Frame_Shift_Del p.V223Lfs*4 0.08 TCGA-EW-A2FV-01 4 21699034 21699034 T - KCNIP4 Intron 0.08 TCGA-EW-A2FV-01 4 24875311 24875311 T - CCDC149 Frame_Shift_Del p.R86Gfs*10 0.11 TCGA-EW-A2FV-01 4 25315721 25315721 T - ZCCHC4 Frame_Shift_Del p.Y62Mfs*51 0.09 TCGA-EW-A2FV-01 4 25665923 25665923 T - SLC34A2 Frame_Shift_Del p.S119Vfs*30 0.08 TCGA-EW-A2FV-01 4 2659576 2659576 T - FAM193A Frame_Shift_Del p.F163Lfs*11 0.09 TCGA-EW-A2FV-01 4 27004600 27004600 T - STIM2 Frame_Shift_Del p.L286* 0.09 TCGA-EW-A2FV-01 4 2747188 2747188 T - TNIP2 Frame_Shift_Del p.K214Nfs*4 0.08 TCGA-EW-A2FV-01 4 2826378 2826378 T - SH3BP2 Frame_Shift_Del p.F151Sfs*105 0.10 TCGA-EW-A2FV-01 4 289234 289234 T - ZNF732 Frame_Shift_Del p.K73Nfs*19 0.08 TCGA-EW-A2FV-01 4 2946889 2946889 G - NOP14 Frame_Shift_Del p.P568Lfs*22 0.10 TCGA-EW-A2FV-01 4 2952923 2952923 T - NOP14 Frame_Shift_Del p.K307Rfs*11 0.08 TCGA-EW-A2FV-01 4 3419204 3419204 G - RGS12 Frame_Shift_Del p.W900Gfs*130 0.13 TCGA-EW-A2FV-01 4 3449713 3449713 C - HGFAC Frame_Shift_Del p.A531Qfs*17 0.16 TCGA-EW-A2FV-01 4 39310510 39310510 T - RFC1 Frame_Shift_Del p.K544Rfs*55 0.13 TCGA-EW-A2FV-01 4 3952867 3952867 T - FAM86EP Intron 0.14 TCGA-EW-A2FV-01 4 39846381 39846381 A - PDS5A Frame_Shift_Del p.L1148Yfs*23 0.08 TCGA-EW-A2FV-01 4 40244943 40244943 C - RHOH 5'UTR 0.12 TCGA-EW-A2FV-01 4 40763241 40763241 A - NSUN7 Frame_Shift_Del p.K138Nfs*20 0.09 TCGA-EW-A2FV-01 4 41748245 41748245 T - PHOX2B Frame_Shift_Del p.K175Sfs*134 0.11 TCGA-EW-A2FV-01 4 420607 420607 T - ABCA11P RNA 0.08 TCGA-EW-A2FV-01 4 42466970 42466970 A - ATP8A1 Frame_Shift_Del p.G817Vfs*18 0.08 TCGA-EW-A2FV-01 4 42509060 42509060 C - ATP8A1 Frame_Shift_Del p.D687Tfs*16 0.09 TCGA-EW-A2FV-01 4 4275309 4275309 C - LYAR Splice_Site p.X307_splice 0.12 TCGA-EW-A2FV-01 4 4301765 4301765 A - ZBTB49 Frame_Shift_Del p.G33Efs*43 0.08 TCGA-EW-A2FV-01 4 44697732 44697732 A - GUF1 Frame_Shift_Del p.I607Sfs*7 0.10 TCGA-EW-A2FV-01 4 47563007 47563007 T - ATP10D Frame_Shift_Del p.L863* 0.08 TCGA-EW-A2FV-01 4 47574907 47574907 T - ATP10D Frame_Shift_Del p.F1087Lfs*27 0.08 TCGA-EW-A2FV-01 4 47765504 47765504 T - CORIN Frame_Shift_Del p.K170Sfs*61 0.08 TCGA-EW-A2FV-01 4 48143383 48143383 A - TEC Frame_Shift_Del p.F508Lfs*22 0.09 TCGA-EW-A2FV-01 4 52945019 52945019 T - SPATA18 Frame_Shift_Del p.C381Vfs*15 0.08 TCGA-EW-A2FV-01 4 53751955 53751955 T - SCFD2 Frame_Shift_Del p.M641Wfs*9 0.11 TCGA-EW-A2FV-01 4 54967954 54967954 G - GSX2 Frame_Shift_Del p.K262Rfs*95 0.12 TCGA-EW-A2FV-01 4 55597564 55597564 A - KIT Frame_Shift_Del p.R739Gfs*4 0.11 TCGA-EW-A2FV-01 4 56883861 56883861 A - CEP135 Frame_Shift_Del p.A952Pfs*5 0.08 TCGA-EW-A2FV-01 4 57181397 57181397 A - KIAA1211 Frame_Shift_Del p.A578Pfs*12 0.11 TCGA-EW-A2FV-01 4 57193864 57193864 G - KIAA1211 Frame_Shift_Del p.R1199Sfs*38 0.09 TCGA-EW-A2FV-01 4 57209792 57209792 A - AASDH Frame_Shift_Del p.L904* 0.09 TCGA-EW-A2FV-01 4 57796309 57796309 A - REST Frame_Shift_Del p.T430Pfs*19 0.10 TCGA-EW-A2FV-01 4 57832830 57832830 C - NOA1 Frame_Shift_Del p.A574Qfs*37 0.08 TCGA-EW-A2FV-01 4 57843397 57843397 C - NOA1 Frame_Shift_Del p.A119Pfs*21 0.09 TCGA-EW-A2FV-01 4 5982027 5982027 G - C4orf50 Frame_Shift_Del p.R489Gfs*12 0.09 TCGA-EW-A2FV-01 4 62849172 62849172 G - LPHN3 Frame_Shift_Del p.V963Cfs*39 0.09 TCGA-EW-A2FV-01 4 6349619 6349619 C - PPP2R2C Frame_Shift_Del p.L249Sfs*39 0.09 TCGA-EW-A2FV-01 4 6590771 6590771 G - MAN2B2 Splice_Site p.X189_splice 0.09 TCGA-EW-A2FV-01 4 68490810 68490810 T - UBA6 Frame_Shift_Del p.M872Cfs*15 0.08 TCGA-EW-A2FV-01 4 68749675 68749675 T - TMPRSS11D 5'UTR 0.11 TCGA-EW-A2FV-01 4 68928319 68928319 T - TMPRSS11F Intron 0.10 TCGA-EW-A2FV-01 4 7016240 7016240 T - TBC1D14 Frame_Shift_Del p.F572Sfs*6 0.09 TCGA-EW-A2FV-01 4 70620845 70620845 T - SULT1B1 Frame_Shift_Del p.I31Lfs*12 0.08 TCGA-EW-A2FV-01 4 71347402 71347402 C - MUC7 Frame_Shift_Del p.P315Qfs*49 0.08 TCGA-EW-A2FV-01 4 72618268 72618268 G - GC Frame_Shift_Del p.I474* 0.12 TCGA-EW-A2FV-01 4 73156581 73156581 G - ADAMTS3 Frame_Shift_Del p.W975Gfs*6 0.11 TCGA-EW-A2FV-01 4 74012527 74012527 C - ANKRD17 Frame_Shift_Del p.G608Vfs*5 0.09 TCGA-EW-A2FV-01 4 74319551 74319551 T - AFP Frame_Shift_Del p.F575Sfs*25 0.08 TCGA-EW-A2FV-01 4 755106 755106 G - PCGF3 Frame_Shift_Del p.L169* 0.09 TCGA-EW-A2FV-01 4 75938273 75938273 A - PARM1 Frame_Shift_Del p.V229* 0.10 TCGA-EW-A2FV-01 4 76521482 76521482 T - CDKL2 Frame_Shift_Del p.K455Nfs*15 0.09 TCGA-EW-A2FV-01 4 76927311 76927311 T - CXCL9 Frame_Shift_Del p.I61Lfs*7 0.09 TCGA-EW-A2FV-01 4 77065563 77065563 G - NUP54 Frame_Shift_Del p.P44Qfs*34 0.08 TCGA-EW-A2FV-01 4 77084417 77084417 A - SCARB2 Frame_Shift_Del p.F453Lfs*41 0.09 TCGA-EW-A2FV-01 4 77292673 77292673 T - CCDC158 Frame_Shift_Del p.K349Sfs*3 0.08 TCGA-EW-A2FV-01 4 78697453 78697453 T - CNOT6L Frame_Shift_Del p.K33Nfs*7 0.09 TCGA-EW-A2FV-01 4 78740443 78740443 A - CNOT6L Intron 0.11 TCGA-EW-A2FV-01 4 78804428 78804428 A - MRPL1 Frame_Shift_Del p.T61Hfs*9 0.17 TCGA-EW-A2FV-01 4 79285171 79285171 C - FRAS1 Frame_Shift_Del p.P896Lfs*74 0.08 TCGA-EW-A2FV-01 4 79367961 79367961 T - FRAS1 Frame_Shift_Del p.S1980Lfs*2 0.10 TCGA-EW-A2FV-01 4 79780793 79780793 T - BMP2K Frame_Shift_Del p.F314Lfs*28 0.10 TCGA-EW-A2FV-01 4 80327734 80327734 C - GK2 Frame_Shift_Del p.V541* 0.08 TCGA-EW-A2FV-01 4 81196062 81196062 G - FGF5 Splice_Site p.X119_splice 0.08 TCGA-EW-A2FV-01 4 8218734 8218734 C - SH3TC1 Frame_Shift_Del p.R228Gfs*48 0.08 TCGA-EW-A2FV-01 4 8218754 8218754 C - SH3TC1 Frame_Shift_Del p.Q235Rfs*41 0.09 TCGA-EW-A2FV-01 4 83411241 83411241 C - TMEM150C Frame_Shift_Del p.A172Hfs*61 0.09 TCGA-EW-A2FV-01 4 83740329 83740329 G - SEC31A Frame_Shift_Del p.M1188Cfs*5 0.08 TCGA-EW-A2FV-01 4 83750154 83750154 T - SEC31A Frame_Shift_Del p.K1009Rfs*17 0.08 TCGA-EW-A2FV-01 4 84465737 84465737 A - AGPAT9 Frame_Shift_Del p.N65Tfs*44 0.09 TCGA-EW-A2FV-01 4 85626621 85626621 T - WDFY3 Frame_Shift_Del p.K2754Sfs*11 0.08 TCGA-EW-A2FV-01 4 88416195 88416195 C - SPARCL1 Frame_Shift_Del p.A47Lfs*28 0.11 TCGA-EW-A2FV-01 4 88532078 88532078 T - DSPP Frame_Shift_Del p.C8Afs*5 0.08 TCGA-EW-A2FV-01 4 88755895 88755895 T - MEPE Frame_Shift_Del p.F11Sfs*3 0.08 TCGA-EW-A2FV-01 4 89189465 89189465 A - PPM1K Frame_Shift_Del p.F243Lfs*2 0.12 TCGA-EW-A2FV-01 4 89189907 89189907 T - PPM1K Frame_Shift_Del p.D232Mfs*13 0.12 TCGA-EW-A2FV-01 4 89311910 89311910 C - HERC6 Frame_Shift_Del p.P182Hfs*52 0.11 TCGA-EW-A2FV-01 4 89585357 89585357 A - HERC3 Frame_Shift_Del p.I445Lfs*16 0.09 TCGA-EW-A2FV-01 4 89618718 89618718 G - NAP1L5 Frame_Shift_Del p.P63Qfs*15 0.09 TCGA-EW-A2FV-01 4 90034616 90034616 A - TIGD2 Frame_Shift_Del p.E166Rfs*26 0.13 TCGA-EW-A2FV-01 4 90816354 90816354 C - MMRN1 Frame_Shift_Del p.L78Ffs*18 0.10 TCGA-EW-A2FV-01 4 95220665 95220665 T - HPGDS Frame_Shift_Del p.N189Tfs*3 0.08 TCGA-EW-A2FV-01 4 96137336 96137336 C - UNC5C Frame_Shift_Del p.A558Pfs*12 0.09 TCGA-EW-A2FV-01 4 9982273 9982273 A - SLC2A9 Frame_Shift_Del p.F208Lfs*30 0.14 TCGA-EW-A2FV-01 5 102285270 102285270 A - PAM Frame_Shift_Del p.N226Ifs*16 0.10 TCGA-EW-A2FV-01 5 109159493 109159493 T - MAN2A1 Frame_Shift_Del p.F842Lfs*16 0.10 TCGA-EW-A2FV-01 5 109200788 109200788 T - MAN2A1 Frame_Shift_Del p.F1075Lfs*27 0.09 TCGA-EW-A2FV-01 5 111500744 111500744 T - EPB41L4A Frame_Shift_Del p.K668Nfs*7 0.10 TCGA-EW-A2FV-01 5 112256977 112256977 G - REEP5 Intron 0.09 TCGA-EW-A2FV-01 5 114473228 114473228 A - TRIM36 Frame_Shift_Del p.L318* 0.08 TCGA-EW-A2FV-01 5 114477011 114477011 T - TRIM36 Frame_Shift_Del p.I278Yfs*4 0.08 TCGA-EW-A2FV-01 5 115815968 115815968 C - SEMA6A Frame_Shift_Del p.G367Vfs*9 0.11 TCGA-EW-A2FV-01 5 118574716 118574716 T - DMXL1 Frame_Shift_Del p.F2844Lfs*9 0.09 TCGA-EW-A2FV-01 5 121402378 121402378 T - LOX 3'UTR 0.08 TCGA-EW-A2FV-01 5 1214143 1214143 G - SLC6A19 Frame_Shift_Del p.G285Afs*20 0.09 TCGA-EW-A2FV-01 5 121488565 121488565 T - ZNF474 Frame_Shift_Del p.F294Lfs*25 0.12 TCGA-EW-A2FV-01 5 1219075 1219075 C - SLC6A19 Frame_Shift_Del p.P411Rfs*65 0.15 TCGA-EW-A2FV-01 5 1219141 1219141 T - SLC6A19 Frame_Shift_Del p.F433Lfs*43 0.09 TCGA-EW-A2FV-01 5 123979989 123979989 G - ZNF608 Frame_Shift_Del p.S1358Afs*12 0.09 TCGA-EW-A2FV-01 5 123985340 123985340 G - ZNF608 Frame_Shift_Del p.L405Yfs*24 0.09 TCGA-EW-A2FV-01 5 126781226 126781226 G - MEGF10 Frame_Shift_Del p.A858Pfs*10 0.10 TCGA-EW-A2FV-01 5 126993234 126993234 C - CTXN3 Frame_Shift_Del p.S9Hfs*3 0.14 TCGA-EW-A2FV-01 5 127595194 127595194 C - FBN2 Frame_Shift_Del p.E2898Sfs*8 0.08 TCGA-EW-A2FV-01 5 127647603 127647603 G - FBN2 Frame_Shift_Del p.P1641Lfs*8 0.09 TCGA-EW-A2FV-01 5 1278878 1278878 G - TERT Frame_Shift_Del p.Q722Rfs*45 0.09 TCGA-EW-A2FV-01 5 128301790 128301790 G - SLC27A6 5'UTR 0.18 TCGA-EW-A2FV-01 5 128442680 128442680 C - ISOC1 Frame_Shift_Del p.R226Efs*17 0.08 TCGA-EW-A2FV-01 5 130791609 130791609 A - RAPGEF6 Frame_Shift_Del p.F987Lfs*34 0.09 TCGA-EW-A2FV-01 5 130805497 130805497 A - RAPGEF6 Intron 0.09 TCGA-EW-A2FV-01 5 131543433 131543433 T - P4HA2 Frame_Shift_Del p.I350Sfs*38 0.10 TCGA-EW-A2FV-01 5 131670615 131670615 G - SLC22A4 Frame_Shift_Del p.V418Yfs*79 0.14 TCGA-EW-A2FV-01 5 131945043 131945043 A - RAD50 Frame_Shift_Del p.N998Mfs*4 0.08 TCGA-EW-A2FV-01 5 132039247 132039247 T - KIF3A Frame_Shift_Del p.A432Hfs*20 0.08 TCGA-EW-A2FV-01 5 132046657 132046657 T - KIF3A Frame_Shift_Del p.R408Efs*12 0.12 TCGA-EW-A2FV-01 5 132096830 132096830 T - SEPT8 Frame_Shift_Del p.R364Gfs*10 0.09 TCGA-EW-A2FV-01 5 132736441 132736441 C - FSTL4 Frame_Shift_Del p.C133Ffs*16 0.11 TCGA-EW-A2FV-01 5 133292639 133292639 A - C5orf15 Frame_Shift_Del p.C237Vfs*10 0.08 TCGA-EW-A2FV-01 5 133707322 133707322 T - UBE2B Frame_Shift_Del p.F13Sfs*43 0.10 TCGA-EW-A2FV-01 5 134130599 134130599 T - DDX46 Frame_Shift_Del p.F563Sfs*35 0.08 TCGA-EW-A2FV-01 5 134343685 134343685 G - CATSPER3 Frame_Shift_Del p.A178Pfs*66 0.09 TCGA-EW-A2FV-01 5 134907534 134907534 T - CXCL14 3'UTR 0.09 TCGA-EW-A2FV-01 5 137228228 137228228 T - PKD2L2 Frame_Shift_Del p.L66Wfs*19 0.09 TCGA-EW-A2FV-01 5 137492940 137492940 C - BRD8 Intron 0.09 TCGA-EW-A2FV-01 5 137537070 137537070 T - CDC23 Frame_Shift_Del p.K161Nfs*47 0.08 TCGA-EW-A2FV-01 5 138773183 138773183 G - DNAJC18 Frame_Shift_Del p.C36Vfs*7 0.09 TCGA-EW-A2FV-01 5 139193105 139193105 G - PSD2 Frame_Shift_Del p.A196Lfs*40 0.15 TCGA-EW-A2FV-01 5 139739896 139739896 G - SLC4A9 Frame_Shift_Del p.D26Tfs*35 0.11 TCGA-EW-A2FV-01 5 139941418 139941418 T - APBB3 Intron 0.08 TCGA-EW-A2FV-01 5 139943844 139943844 C - APBB3 5'UTR 0.12 TCGA-EW-A2FV-01 5 139947670 139947670 T - SLC35A4 Frame_Shift_Del p.F306Sfs*22 0.08 TCGA-EW-A2FV-01 5 140021881 140021881 T - TMCO6 Intron 0.12 TCGA-EW-A2FV-01 5 140054303 140054303 A - HARS Frame_Shift_Del p.D473Efs*9 0.09 TCGA-EW-A2FV-01 5 140209630 140209630 A - PCDHA6 Frame_Shift_Del p.D653Tfs*7 0.13 TCGA-EW-A2FV-01 5 140215723 140215723 G - PCDHA7 Frame_Shift_Del p.G586Afs*52 0.09 TCGA-EW-A2FV-01 5 140237959 140237959 C - PCDHA10 Frame_Shift_Del p.P776Hfs*5 0.11 TCGA-EW-A2FV-01 5 140250551 140250551 C - PCDHA11 Frame_Shift_Del p.R622Afs*9 0.11 TCGA-EW-A2FV-01 5 140347381 140347381 C T PCDHAC2 Missense_Mutation p.P344S 0.11 tolerated(0.23) possibly_damaging(0.458) TCGA-EW-A2FV-01 5 140603570 140603570 A - PCDHB14 Frame_Shift_Del p.N165Tfs*32 0.09 TCGA-EW-A2FV-01 5 140712276 140712276 G - PCDHGA1 Frame_Shift_Del p.G676Afs*57 0.08 TCGA-EW-A2FV-01 5 140732204 140732204 A - PCDHGB1 Frame_Shift_Del p.I794Sfs*53 0.09 TCGA-EW-A2FV-01 5 140812280 140812280 C - PCDHGA12 Frame_Shift_Del p.P653Lfs*43 0.15 TCGA-EW-A2FV-01 5 140868948 140868948 T - PCDHGC5 Frame_Shift_Del p.N47Kfs*8 0.09 TCGA-EW-A2FV-01 5 141025713 141025713 C - FCHSD1 Frame_Shift_Del p.E364Rfs*5 0.09 TCGA-EW-A2FV-01 5 141248509 141248509 G - PCDH1 Frame_Shift_Del p.I177Sfs*58 0.08 TCGA-EW-A2FV-01 5 141248539 141248539 G - PCDH1 Frame_Shift_Del p.N167Tfs*68 0.09 TCGA-EW-A2FV-01 5 141381626 141381626 T - GNPDA1 Frame_Shift_Del p.S280Afs*42 0.10 TCGA-EW-A2FV-01 5 141993589 141993589 C - FGF1 Frame_Shift_Del p.G35Afs*4 0.09 TCGA-EW-A2FV-01 5 141993615 141993615 G - FGF1 Frame_Shift_Del p.K27Nfs*12 0.09 TCGA-EW-A2FV-01 5 146658944 146658944 T - STK32A Frame_Shift_Del p.F82Sfs*42 0.10 TCGA-EW-A2FV-01 5 146785174 146785174 T - DPYSL3 Frame_Shift_Del p.G385Efs*3 0.08 TCGA-EW-A2FV-01 5 147029952 147029952 T - JAKMIP2 Frame_Shift_Del p.K262Nfs*27 0.08 TCGA-EW-A2FV-01 5 147506581 147506581 A - SPINK5 Frame_Shift_Del p.K999Sfs*34 0.11 TCGA-EW-A2FV-01 5 14769185 14769185 T - ANKH Frame_Shift_Del p.N71Mfs*7 0.10 TCGA-EW-A2FV-01 5 148626047 148626047 C - ABLIM3 Frame_Shift_Del p.R498Efs*28 0.09 TCGA-EW-A2FV-01 5 148725126 148725126 G - GRPEL2 Frame_Shift_Del p.G9Afs*54 0.11 TCGA-EW-A2FV-01 5 148746996 148746996 T - PCYOX1L Frame_Shift_Del p.L253Cfs*2 0.08 TCGA-EW-A2FV-01 5 148929702 148929702 G - CSNK1A1 Frame_Shift_Del p.Q56Sfs*33 0.09 TCGA-EW-A2FV-01 5 148997794 148997794 C - ARHGEF37 Frame_Shift_Del p.N239Tfs*12 0.12 TCGA-EW-A2FV-01 5 149264360 149264360 T - PDE6A Frame_Shift_Del p.T637Hfs*8 0.11 TCGA-EW-A2FV-01 5 149449484 149449484 G - CSF1R Frame_Shift_Del p.H488Tfs*124 0.10 TCGA-EW-A2FV-01 5 149630293 149630293 T - CAMK2A Frame_Shift_Del p.K258Nfs*33 0.10 TCGA-EW-A2FV-01 5 149676769 149676769 C - ARSI 3'UTR 0.09 TCGA-EW-A2FV-01 5 150276168 150276168 T - ZNF300 Frame_Shift_Del p.K227Nfs*28 0.10 TCGA-EW-A2FV-01 5 150696400 150696400 T - SLC36A2 Frame_Shift_Del p.N477Tfs*21 0.11 TCGA-EW-A2FV-01 5 150922614 150922614 A - FAT2 Frame_Shift_Del p.S2692Lfs*35 0.12 TCGA-EW-A2FV-01 5 151784666 151784666 C - NMUR2 Frame_Shift_Del p.M4Wfs*15 0.15 TCGA-EW-A2FV-01 5 156378649 156378649 T - TIMD4 Frame_Shift_Del p.M185* 0.10 TCGA-EW-A2FV-01 5 156378711 156378711 G - TIMD4 Frame_Shift_Del p.P164Qfs*9 0.12 TCGA-EW-A2FV-01 5 156788560 156788560 A - CYFIP2 Frame_Shift_Del p.V973Wfs*11 0.08 TCGA-EW-A2FV-01 5 156899736 156899736 C - NIPAL4 Frame_Shift_Del p.L391Sfs*57 0.09 TCGA-EW-A2FV-01 5 156918681 156918681 G - ADAM19 Frame_Shift_Del p.F680Sfs*25 0.12 TCGA-EW-A2FV-01 5 157158485 157158485 T - THG1L Frame_Shift_Del p.L13Wfs*8 0.09 TCGA-EW-A2FV-01 5 157232977 157232977 T - CLINT1 Frame_Shift_Del p.N280Ifs*84 0.08 TCGA-EW-A2FV-01 5 159686525 159686525 T - CCNJL Frame_Shift_Del p.E227Sfs*11 0.11 TCGA-EW-A2FV-01 5 159833585 159833585 G - SLU7 Frame_Shift_Del p.Q393Rfs*31 0.09 TCGA-EW-A2FV-01 5 159842230 159842230 T - SLU7 Frame_Shift_Del p.E24Dfs*5 0.08 TCGA-EW-A2FV-01 5 159854837 159854837 C - PTTG1 Frame_Shift_Del p.P164Lfs*4 0.09 TCGA-EW-A2FV-01 5 16680083 16680083 G - MYO10 Frame_Shift_Del p.T1506Pfs*4 0.09 TCGA-EW-A2FV-01 5 166802245 166802245 C - TENM2 Frame_Shift_Del p.P91Hfs*46 0.10 TCGA-EW-A2FV-01 5 16685857 16685857 T - MYO10 Frame_Shift_Del p.Q1327Rfs*11 0.08 TCGA-EW-A2FV-01 5 167589636 167589636 A - TENM2 Frame_Shift_Del p.N815Tfs*85 0.17 TCGA-EW-A2FV-01 5 167798501 167798501 C - WWC1 Frame_Shift_Del p.P65Hfs*8 0.12 TCGA-EW-A2FV-01 5 168111047 168111047 G - SLIT3 Frame_Shift_Del p.L1204Wfs*17 0.08 TCGA-EW-A2FV-01 5 169026031 169026031 T - SPDL1 Frame_Shift_Del p.F398Lfs*7 0.09 TCGA-EW-A2FV-01 5 169186717 169186717 T - DOCK2 Frame_Shift_Del p.L796* 0.09 TCGA-EW-A2FV-01 5 169507223 169507223 C - DOCK2 Frame_Shift_Del p.L1743Sfs*9 0.09 TCGA-EW-A2FV-01 5 169507287 169507287 G - DOCK2 Frame_Shift_Del 0.09 TCGA-EW-A2FV-01 5 169535132 169535132 A - FOXI1 Frame_Shift_Del p.K219Nfs*13 0.09 TCGA-EW-A2FV-01 5 169694069 169694069 G - LCP2 Frame_Shift_Del p.P211Hfs*25 0.13 TCGA-EW-A2FV-01 5 169931469 169931469 G T KCNIP1 5'Flank 0.30 TCGA-EW-A2FV-01 5 170222225 170222225 C - GABRP Frame_Shift_Del p.I86Yfs*108 0.14 TCGA-EW-A2FV-01 5 171517345 171517345 T - STK10 Frame_Shift_Del p.T526Pfs*15 0.08 TCGA-EW-A2FV-01 5 171523459 171523459 C - STK10 Frame_Shift_Del p.E326Kfs*22 0.09 TCGA-EW-A2FV-01 5 175777732 175777732 G - KIAA1191 Frame_Shift_Del p.Q115Rfs*13 0.11 TCGA-EW-A2FV-01 5 175926014 175926014 G - FAF2 Frame_Shift_Del p.E314Sfs*61 0.12 TCGA-EW-A2FV-01 5 176017632 176017632 G - CDHR2 Frame_Shift_Del p.A1162Lfs*7 0.10 TCGA-EW-A2FV-01 5 176072481 176072481 G - EIF4E1B Frame_Shift_Del p.E194Rfs*42 0.09 TCGA-EW-A2FV-01 5 176308334 176308334 C - HK3 Frame_Shift_Del p.V866Wfs*55 0.10 TCGA-EW-A2FV-01 5 176489079 176489079 A - ZNF346 Frame_Shift_Del p.T243Hfs*4 0.08 TCGA-EW-A2FV-01 5 176520173 176520173 G - FGFR4 Frame_Shift_Del p.A365Pfs*86 0.10 TCGA-EW-A2FV-01 5 176520434 176520434 A - FGFR4 Frame_Shift_Del p.K427Sfs*24 0.14 TCGA-EW-A2FV-01 5 176778460 176778460 G - LMAN2 Frame_Shift_Del p.Y64Tfs*27 0.14 TCGA-EW-A2FV-01 5 176778631 176778631 C - LMAN2 Frame_Shift_Del p.W6* 0.15 TCGA-EW-A2FV-01 5 176793258 176793258 C - RGS14 Frame_Shift_Del p.S51Afs*35 0.14 TCGA-EW-A2FV-01 5 176882130 176882130 G - PRR7 Frame_Shift_Del p.G22Vfs*33 0.14 TCGA-EW-A2FV-01 5 176887653 176887653 C - DBN1 Frame_Shift_Del p.E277Rfs*78 0.08 TCGA-EW-A2FV-01 5 176895113 176895113 T - DBN1 Frame_Shift_Del p.N86Tfs*31 0.09 TCGA-EW-A2FV-01 5 177036008 177036008 A - B4GALT7 Frame_Shift_Del p.K275Nfs*13 0.18 TCGA-EW-A2FV-01 5 177473916 177473916 A - FAM153C Frame_Shift_Del p.K107Rfs*8 0.10 TCGA-EW-A2FV-01 5 179004090 179004090 T - RUFY1 Frame_Shift_Del p.S283Pfs*36 0.09 TCGA-EW-A2FV-01 5 179070431 179070431 T - C5orf60 Frame_Shift_Del p.K114Sfs*3 0.08 TCGA-EW-A2FV-01 5 179222830 179222830 T - LTC4S Frame_Shift_Del p.W68Gfs*113 0.13 TCGA-EW-A2FV-01 5 179331753 179331753 G - TBC1D9B Frame_Shift_Del p.R60Afs*83 0.12 TCGA-EW-A2FV-01 5 179707531 179707531 A - MAPK9 Frame_Shift_Del p.Y11Ifs*13 0.08 TCGA-EW-A2FV-01 5 179765568 179765568 G - GFPT2 Frame_Shift_Del p.R14Gfs*65 0.11 TCGA-EW-A2FV-01 5 180017735 180017735 G - SCGB3A1 Frame_Shift_Del p.T53Pfs*5 0.10 TCGA-EW-A2FV-01 5 180687732 180687732 T - TRIM52 Frame_Shift_Del p.K28Rfs*17 0.13 TCGA-EW-A2FV-01 5 226040 226040 A - SDHA Frame_Shift_Del p.K167Rfs*59 0.12 TCGA-EW-A2FV-01 5 23510087 23510087 G - PRDM9 Frame_Shift_Del p.V85Wfs*24 0.09 TCGA-EW-A2FV-01 5 24511536 24511536 T - CDH10 Frame_Shift_Del p.N301Mfs*4 0.09 TCGA-EW-A2FV-01 5 2749570 2749570 C - IRX2 Frame_Shift_Del p.G194Afs*90 0.08 TCGA-EW-A2FV-01 5 32087823 32087823 T - PDZD2 Frame_Shift_Del p.V1424* 0.08 TCGA-EW-A2FV-01 5 33458716 33458716 T - TARS Frame_Shift_Del p.L379Cfs*27 0.09 TCGA-EW-A2FV-01 5 33984319 33984319 C - SLC45A2 Frame_Shift_Del p.A124Lfs*4 0.08 TCGA-EW-A2FV-01 5 33998816 33998816 G - AMACR Frame_Shift_Del p.Y223* 0.09 TCGA-EW-A2FV-01 5 36227606 36227606 T - NADK2 Frame_Shift_Del p.N121Mfs*2 0.09 TCGA-EW-A2FV-01 5 37008134 37008134 T - NIPBL Frame_Shift_Del p.F1423Lfs*15 0.08 TCGA-EW-A2FV-01 5 37177740 37177740 T - C5orf42 Frame_Shift_Del p.K1961Nfs*8 0.09 TCGA-EW-A2FV-01 5 37324146 37324146 C - NUP155 Frame_Shift_Del p.E719Nfs*3 0.08 TCGA-EW-A2FV-01 5 39122498 39122498 C - FYB Frame_Shift_Del p.G703Efs*20 0.10 TCGA-EW-A2FV-01 5 39202215 39202215 T - FYB Frame_Shift_Del p.K293Rfs*6 0.11 TCGA-EW-A2FV-01 5 39311355 39311355 T - C9 Frame_Shift_Del p.K332Rfs*21 0.10 TCGA-EW-A2FV-01 5 39341301 39341301 G - C9 Frame_Shift_Del p.C142Afs*6 0.09 TCGA-EW-A2FV-01 5 40964923 40964923 G - C7 Frame_Shift_Del p.A611Pfs*26 0.09 TCGA-EW-A2FV-01 5 41018464 41018464 T - MROH2B Frame_Shift_Del p.V915Cfs*2 0.09 TCGA-EW-A2FV-01 5 41927297 41927297 A - FBXO4 Frame_Shift_Del p.K126Sfs*46 0.09 TCGA-EW-A2FV-01 5 42801034 42801034 T - SEPP1 Frame_Shift_Del p.T312Qfs*? 0.10 TCGA-EW-A2FV-01 5 43487070 43487070 T - C5orf34 Frame_Shift_Del p.T622Pfs*87 0.10 TCGA-EW-A2FV-01 5 43644829 43644829 T - NNT Frame_Shift_Del p.Y407Ifs*4 0.09 TCGA-EW-A2FV-01 5 45262631 45262631 G - HCN1 Frame_Shift_Del p.Q689Sfs*91 0.11 TCGA-EW-A2FV-01 5 492015 492015 C - SLC9A3 Frame_Shift_Del p.G128Afs*92 0.12 TCGA-EW-A2FV-01 5 49695694 49695694 T - EMB Frame_Shift_Del p.N322Mfs*32 0.22 TCGA-EW-A2FV-01 5 52160876 52160876 C - ITGA1 Frame_Shift_Del p.T154Hfs*5 0.10 TCGA-EW-A2FV-01 5 52204740 52204740 T - ITGA1 Frame_Shift_Del p.F490Lfs*5 0.09 TCGA-EW-A2FV-01 5 54586064 54586064 T - DHX29 Frame_Shift_Del p.I297* 0.08 TCGA-EW-A2FV-01 5 5460671 5460671 A - KIAA0947 Frame_Shift_Del p.N410Ifs*20 0.13 TCGA-EW-A2FV-01 5 55056059 55056059 T - DDX4 Frame_Shift_Del p.F54Sfs*2 0.09 TCGA-EW-A2FV-01 5 55081633 55081633 A - DDX4 Frame_Shift_Del p.N267Tfs*22 0.15 TCGA-EW-A2FV-01 5 55206402 55206402 C - IL31RA Frame_Shift_Del p.L516* 0.11 TCGA-EW-A2FV-01 5 57751910 57751910 C - PLK2 Frame_Shift_Del p.D443Mfs*5 0.09 TCGA-EW-A2FV-01 5 58270773 58270773 G - PDE4D Frame_Shift_Del p.S717Lfs*22 0.10 TCGA-EW-A2FV-01 5 59894918 59894918 T - DEPDC1B Frame_Shift_Del p.K471Rfs*4 0.10 TCGA-EW-A2FV-01 5 60835555 60835555 T - ZSWIM6 Frame_Shift_Del p.L892* 0.10 TCGA-EW-A2FV-01 5 61846237 61846237 A - IPO11 Frame_Shift_Del p.M806Cfs*14 0.10 TCGA-EW-A2FV-01 5 66460343 66460343 C - MAST4 Frame_Shift_Del p.P1780Lfs*19 0.07 TCGA-EW-A2FV-01 5 66461468 66461468 C - MAST4 Frame_Shift_Del p.P2155Qfs*128 0.17 TCGA-EW-A2FV-01 5 67586638 67586638 T - PIK3R1 Intron 0.08 TCGA-EW-A2FV-01 5 70948544 70948544 T - MCCC2 Frame_Shift_Del p.F513Lfs*41 0.08 TCGA-EW-A2FV-01 5 71411582 71411582 T - MAP1B Frame_Shift_Del p.F82Lfs*26 0.13 TCGA-EW-A2FV-01 5 71491067 71491067 A - MAP1B Frame_Shift_Del p.K629Nfs*10 0.10 TCGA-EW-A2FV-01 5 71634497 71634497 C - PTCD2 Frame_Shift_Del p.L230Yfs*18 0.08 TCGA-EW-A2FV-01 5 72195878 72195878 C - TNPO1 Frame_Shift_Del p.M797Cfs*6 0.08 TCGA-EW-A2FV-01 5 72364538 72364538 C - FCHO2 Frame_Shift_Del p.R505Gfs*14 0.10 TCGA-EW-A2FV-01 5 74028883 74028883 G - GFM2 Frame_Shift_Del p.S518Vfs*2 0.10 TCGA-EW-A2FV-01 5 7414825 7414825 T - ADCY2 Frame_Shift_Del p.V118Lfs*78 0.08 TCGA-EW-A2FV-01 5 75428033 75428033 C - SV2C Frame_Shift_Del p.L154Ffs*14 0.09 TCGA-EW-A2FV-01 5 76722350 76722350 A - PDE8B Frame_Shift_Del p.S878Vfs*2 0.14 TCGA-EW-A2FV-01 5 77523995 77523995 G - AP3B1 Frame_Shift_Del p.I117* 0.12 TCGA-EW-A2FV-01 5 7817052 7817052 C - ADCY2 Frame_Shift_Del p.I987Sfs*20 0.09 TCGA-EW-A2FV-01 5 78301100 78301100 C - DMGDH Frame_Shift_Del p.G794Afs*29 0.08 TCGA-EW-A2FV-01 5 78329123 78329123 T - DMGDH Frame_Shift_Del p.K434Nfs*96 0.08 TCGA-EW-A2FV-01 5 78351686 78351686 T - DMGDH Frame_Shift_Del p.I108Yfs*35 0.08 TCGA-EW-A2FV-01 5 78742915 78742915 T - HOMER1 Frame_Shift_Del p.K116Nfs*25 0.09 TCGA-EW-A2FV-01 5 80088585 80088585 A - MSH3 Frame_Shift_Del p.N861Mfs*6 0.09 TCGA-EW-A2FV-01 5 87492142 87492142 A - TMEM161B Frame_Shift_Del p.F450Lfs*13 0.09 TCGA-EW-A2FV-01 5 87521647 87521647 G - TMEM161B Frame_Shift_Del p.I77Ffs*9 0.08 TCGA-EW-A2FV-01 5 90103451 90103451 A - GPR98 Frame_Shift_Del p.G4958Efs*58 0.11 TCGA-EW-A2FV-01 5 90136727 90136727 C - GPR98 Frame_Shift_Del p.H5649Ifs*5 0.09 TCGA-EW-A2FV-01 5 90281224 90281224 T - GPR98 Frame_Shift_Del p.F6014Sfs*3 0.09 TCGA-EW-A2FV-01 5 92923697 92923697 A - NR2F1 Frame_Shift_Del p.N180Tfs*177 0.09 TCGA-EW-A2FV-01 5 93217211 93217211 G - FAM172A Frame_Shift_Del p.Q251Kfs*6 0.10 TCGA-EW-A2FV-01 5 94749871 94749871 A - FAM81B Frame_Shift_Del p.K173Nfs*9 0.10 TCGA-EW-A2FV-01 5 95152258 95152258 C - GLRX Frame_Shift_Del p.E94Nfs*3 0.09 TCGA-EW-A2FV-01 5 95751767 95751767 C - PCSK1 Frame_Shift_Del p.V227Lfs*12 0.10 TCGA-EW-A2FV-01 5 9629483 9629483 C - TAS2R1 Frame_Shift_Del p.G221Vfs*14 0.12 TCGA-EW-A2FV-01 5 96339180 96339180 T - LNPEP Frame_Shift_Del p.V573Sfs*29 0.08 TCGA-EW-A2FV-01 5 98106346 98106346 C - RGMB 5'UTR 0.09 TCGA-EW-A2FV-01 6 100911356 100911356 C - SIM1 5'UTR 0.08 TCGA-EW-A2FV-01 6 101075521 101075521 A - ASCC3 Frame_Shift_Del p.P1530Qfs*12 0.12 TCGA-EW-A2FV-01 6 101215101 101215101 T - ASCC3 Frame_Shift_Del p.T506Pfs*6 0.09 TCGA-EW-A2FV-01 6 102511904 102511904 A - GRIK2 Intron 0.08 TCGA-EW-A2FV-01 6 10398703 10398703 G - TFAP2A Frame_Shift_Del p.H421Tfs*113 0.08 TCGA-EW-A2FV-01 6 10530029 10530029 C - GCNT2 Frame_Shift_Del p.D297Tfs*6 0.12 TCGA-EW-A2FV-01 6 105726144 105726144 G - PREP Frame_Shift_Del p.L670Cfs*20 0.10 TCGA-EW-A2FV-01 6 109768897 109768897 T - MICAL1 Frame_Shift_Del p.K658Sfs*25 0.10 TCGA-EW-A2FV-01 6 109775268 109775268 C - MICAL1 Frame_Shift_Del p.L45Cfs*121 0.08 TCGA-EW-A2FV-01 6 109850258 109850258 T - AK9 Frame_Shift_Del p.R1197Efs*7 0.08 TCGA-EW-A2FV-01 6 109954428 109954428 T - AK9 Frame_Shift_Del p.D345Mfs*13 0.09 TCGA-EW-A2FV-01 6 110746117 110746117 T - SLC22A16 Frame_Shift_Del p.T565Rfs*21 0.08 TCGA-EW-A2FV-01 6 111583537 111583537 T - KIAA1919 Frame_Shift_Del p.F36Sfs*11 0.10 TCGA-EW-A2FV-01 6 111701296 111701296 T - REV3L Frame_Shift_Del p.N448Ifs*21 0.09 TCGA-EW-A2FV-01 6 11185867 11185867 T - NEDD9 Frame_Shift_Del p.K678Sfs*23 0.13 TCGA-EW-A2FV-01 6 111880641 111880641 C - TRAF3IP2 Frame_Shift_Del p.P556Lfs*38 0.09 TCGA-EW-A2FV-01 6 112469450 112469450 G - LAMA4 Frame_Shift_Del p.M755Wfs*5 0.10 TCGA-EW-A2FV-01 6 116439037 116439037 A - NT5DC1 Frame_Shift_Del p.T155Hfs*8 0.09 TCGA-EW-A2FV-01 6 116756810 116756810 T - DSE Frame_Shift_Del p.F394Lfs*7 0.09 TCGA-EW-A2FV-01 6 116948995 116948995 G - RSPH4A Frame_Shift_Del p.E377Kfs*11 0.09 TCGA-EW-A2FV-01 6 117043336 117043336 C - KPNA5 Frame_Shift_Del p.P269Qfs*4 0.10 TCGA-EW-A2FV-01 6 117589426 117589426 T - VGLL2 Frame_Shift_Del p.S56Pfs*8 0.11 TCGA-EW-A2FV-01 6 117593682 117593682 C - VGLL2 3'UTR 0.10 TCGA-EW-A2FV-01 6 117642513 117642513 C - ROS1 Frame_Shift_Del p.V1896* 0.08 TCGA-EW-A2FV-01 6 117642528 117642528 T - ROS1 Frame_Shift_Del p.S1891Vfs*6 0.08 TCGA-EW-A2FV-01 6 117674228 117674228 C - ROS1 Frame_Shift_Del p.A1416Pfs*6 0.09 TCGA-EW-A2FV-01 6 117718090 117718090 T - ROS1 Frame_Shift_Del p.N256Ifs*11 0.11 TCGA-EW-A2FV-01 6 12122868 12122868 A - HIVEP1 Frame_Shift_Del p.K949Rfs*44 0.13 TCGA-EW-A2FV-01 6 121562681 121562681 T - TBC1D32 Frame_Shift_Del p.K725Nfs*21 0.08 TCGA-EW-A2FV-01 6 125379120 125379120 T - RNF217 Frame_Shift_Del p.F92Lfs*56 0.08 TCGA-EW-A2FV-01 6 127767725 127767725 T - KIAA0408 Frame_Shift_Del p.N580Ifs*22 0.09 TCGA-EW-A2FV-01 6 129766910 129766910 A - LAMA2 Frame_Shift_Del p.N2126Tfs*5 0.11 TCGA-EW-A2FV-01 6 129929051 129929051 A - ARHGAP18 Frame_Shift_Del p.Q424Rfs*16 0.10 TCGA-EW-A2FV-01 6 130466524 130466524 A - SAMD3 Frame_Shift_Del p.F413Lfs*11 0.09 TCGA-EW-A2FV-01 6 131222229 131222229 G - EPB41L2 Frame_Shift_Del p.L341Cfs*55 0.09 TCGA-EW-A2FV-01 6 131540900 131540900 A - AKAP7 Frame_Shift_Del p.K269Nfs*14 0.09 TCGA-EW-A2FV-01 6 132032086 132032086 T - CTAGE9 Frame_Shift_Del p.A25Hfs*6 0.10 TCGA-EW-A2FV-01 6 132171206 132171206 A - ENPP1 Frame_Shift_Del p.N131Tfs*4 0.09 TCGA-EW-A2FV-01 6 132179854 132179854 A - ENPP1 Frame_Shift_Del p.T256Lfs*19 0.08 TCGA-EW-A2FV-01 6 132860357 132860357 T - TAAR9 Frame_Shift_Del p.Y311Mfs*? 0.08 TCGA-EW-A2FV-01 6 132910408 132910408 G - TAAR5 Frame_Shift_Del p.L140Cfs*9 0.10 TCGA-EW-A2FV-01 6 133032929 133032929 A - VNN1 Frame_Shift_Del p.F87Sfs*18 0.08 TCGA-EW-A2FV-01 6 136683619 136683619 T - MAP7 Frame_Shift_Del p.R521Gfs*109 0.08 TCGA-EW-A2FV-01 6 138601280 138601280 C - KIAA1244 Frame_Shift_Del p.L815Sfs*5 0.09 TCGA-EW-A2FV-01 6 138753198 138753198 C - NHSL1 Frame_Shift_Del p.A766Pfs*108 0.10 TCGA-EW-A2FV-01 6 138768165 138768165 C - NHSL1 Frame_Shift_Del p.A217Lfs*8 0.08 TCGA-EW-A2FV-01 6 139266429 139266429 G - REPS1 Frame_Shift_Del p.S186Afs*58 0.09 TCGA-EW-A2FV-01 6 139694698 139694698 G - CITED2 Frame_Shift_Del p.Y129Tfs*18 0.09 TCGA-EW-A2FV-01 6 139694989 139694989 C - CITED2 Frame_Shift_Del p.Q32Sfs*20 0.13 TCGA-EW-A2FV-01 6 143086006 143086006 T - HIVEP2 Frame_Shift_Del p.K1816Nfs*27 0.09 TCGA-EW-A2FV-01 6 143093763 143093763 C - HIVEP2 Frame_Shift_Del p.D705Mfs*7 0.08 TCGA-EW-A2FV-01 6 143095532 143095532 G - HIVEP2 Frame_Shift_Del p.P115Hfs*44 0.10 TCGA-EW-A2FV-01 6 143784126 143784126 A - PEX3 Frame_Shift_Del p.N95Tfs*7 0.11 TCGA-EW-A2FV-01 6 143792178 143792178 G - PEX3 Frame_Shift_Del p.G138Dfs*39 0.08 TCGA-EW-A2FV-01 6 144263709 144263709 G - PLAGL1 Frame_Shift_Del p.Q82Rfs*48 0.08 TCGA-EW-A2FV-01 6 146755414 146755414 C - GRM1 Frame_Shift_Del p.P1024Lfs*7 0.15 TCGA-EW-A2FV-01 6 149340329 149340329 T - UST Frame_Shift_Del p.Y247Tfs*26 0.09 TCGA-EW-A2FV-01 6 149342523 149342523 G - UST Frame_Shift_Del p.I283Ffs*38 0.10 TCGA-EW-A2FV-01 6 149783016 149783016 A - ZC3H12D Frame_Shift_Del p.F132Lfs*53 0.08 TCGA-EW-A2FV-01 6 150123516 150123516 T - PCMT1 Intron 0.09 TCGA-EW-A2FV-01 6 151670925 151670925 A - AKAP12 Frame_Shift_Del p.E468Kfs*30 0.14 TCGA-EW-A2FV-01 6 152453273 152453273 G - SYNE1 Frame_Shift_Del p.P8693Qfs*117 0.09 TCGA-EW-A2FV-01 6 152646381 152646381 T - SYNE1 Frame_Shift_Del p.A5166Lfs*16 0.09 TCGA-EW-A2FV-01 6 152748907 152748907 C - SYNE1 Frame_Shift_Del p.G1674Vfs*25 0.09 TCGA-EW-A2FV-01 6 15533541 15533541 A - DTNBP1 Frame_Shift_Del p.F199Lfs*27 0.11 TCGA-EW-A2FV-01 6 155458703 155458703 G - TIAM2 Frame_Shift_Del p.V530Wfs*11 0.11 TCGA-EW-A2FV-01 6 155728266 155728266 G - NOX3 Frame_Shift_Del p.S527Afs*74 0.08 TCGA-EW-A2FV-01 6 157496037 157496037 C - ARID1B Intron 0.12 TCGA-EW-A2FV-01 6 158541501 158541501 T - SERAC1 Frame_Shift_Del p.K374Nfs*46 0.08 TCGA-EW-A2FV-01 6 159204621 159204621 T - EZR Frame_Shift_Del p.N210Tfs*16 0.09 TCGA-EW-A2FV-01 6 160225587 160225587 A - PNLDC1 Frame_Shift_Del p.N117Tfs*6 0.08 TCGA-EW-A2FV-01 6 160466816 160466816 A - IGF2R Frame_Shift_Del p.G603Afs*59 0.11 TCGA-EW-A2FV-01 6 161123334 161123334 A - PLG 5'UTR p.M1? 0.08 TCGA-EW-A2FV-01 6 161132170 161132170 A - PLG Frame_Shift_Del p.N120Mfs*110 0.08 TCGA-EW-A2FV-01 6 161135868 161135868 T - PLG Frame_Shift_Del p.S198Pfs*32 0.15 TCGA-EW-A2FV-01 6 161157984 161157984 G - PLG Frame_Shift_Del p.C585Vfs*27 0.11 TCGA-EW-A2FV-01 6 161469823 161469823 T - MAP3K4 Frame_Shift_Del p.L174Cfs*33 0.18 TCGA-EW-A2FV-01 6 161781122 161781122 T - PARK2 Frame_Shift_Del p.N428Mfs*7 0.09 TCGA-EW-A2FV-01 6 161969946 161969946 C A PARK2 Silent p.L341L 0.23 TCGA-EW-A2FV-01 6 16306825 16306825 T - ATXN1 Frame_Shift_Del p.N728Tfs*17 0.13 TCGA-EW-A2FV-01 6 166826313 166826313 G - RPS6KA2 Frame_Shift_Del p.V722Cfs*12 0.12 TCGA-EW-A2FV-01 6 166843949 166843949 A - RPS6KA2 Frame_Shift_Del p.S533Pfs*9 0.11 TCGA-EW-A2FV-01 6 166862277 166862277 C - RPS6KA2 Frame_Shift_Del p.V431Wfs*21 0.08 TCGA-EW-A2FV-01 6 167550081 167550081 A - CCR6 Frame_Shift_Del p.G123Afs*14 0.12 TCGA-EW-A2FV-01 6 167595273 167595273 A - TCP10L2 Frame_Shift_Del p.K312Rfs*50 0.10 TCGA-EW-A2FV-01 6 167721276 167721276 C - UNC93A Frame_Shift_Del p.H330Tfs*5 0.09 TCGA-EW-A2FV-01 6 167754367 167754367 T - TTLL2 Frame_Shift_Del p.S329Pfs*47 0.11 TCGA-EW-A2FV-01 6 168711922 168711922 C - DACT2 Frame_Shift_Del p.D97Tfs*35 0.08 TCGA-EW-A2FV-01 6 169628249 169628249 C - THBS2 Frame_Shift_Del p.G796Vfs*69 0.08 TCGA-EW-A2FV-01 6 24448121 24448121 G - GPLD1 Frame_Shift_Del p.S555Afs*2 0.10 TCGA-EW-A2FV-01 6 24865618 24865618 T - FAM65B Frame_Shift_Del p.M159* 0.09 TCGA-EW-A2FV-01 6 25551235 25551235 A - LRRC16A Frame_Shift_Del p.K810Rfs*28 0.09 TCGA-EW-A2FV-01 6 25861916 25861916 A - SLC17A3 Frame_Shift_Del p.F187Lfs*34 0.08 TCGA-EW-A2FV-01 6 26385294 26385294 A - BTN2A2 Frame_Shift_Del p.N50Tfs*54 0.10 TCGA-EW-A2FV-01 6 26452446 26452446 C - BTN3A3 Frame_Shift_Del p.D523Ifs*4 0.11 TCGA-EW-A2FV-01 6 27222790 27222790 A - PRSS16 Frame_Shift_Del p.S453Vfs*2 0.08 TCGA-EW-A2FV-01 6 28269557 28269557 G - PGBD1 Frame_Shift_Del p.V644* 0.08 TCGA-EW-A2FV-01 6 29142035 29142035 T - OR2J2 Frame_Shift_Del p.L209Sfs*19 0.09 TCGA-EW-A2FV-01 6 29323525 29323525 C - OR5V1 Frame_Shift_Del p.A150Lfs*13 0.08 TCGA-EW-A2FV-01 6 29644775 29644775 A - ZFP57 Frame_Shift_Del p.F2Lfs*4 0.12 TCGA-EW-A2FV-01 6 3127574 3127574 C - BPHL Frame_Shift_Del p.P105Qfs*20 0.08 TCGA-EW-A2FV-01 6 31513896 31513896 T - ATP6V1G2 Frame_Shift_Del p.K58Sfs*88 0.08 TCGA-EW-A2FV-01 6 31668786 31668786 T - ABHD16A Frame_Shift_Del p.V93Wfs*124 0.08 TCGA-EW-A2FV-01 6 31685450 31685450 C - LY6G6D Frame_Shift_Del p.P91Qfs*33 0.09 TCGA-EW-A2FV-01 6 31700019 31700019 A - CLIC1 Frame_Shift_Del p.L180Rfs*7 0.09 TCGA-EW-A2FV-01 6 31749866 31749866 C - VARS Frame_Shift_Del p.E747Rfs*9 0.08 TCGA-EW-A2FV-01 6 31760211 31760211 T - VARS Frame_Shift_Del p.Q248Hfs*91 0.08 TCGA-EW-A2FV-01 6 31777954 31777954 T - HSPA1L Frame_Shift_Del p.K599Rfs*42 0.09 TCGA-EW-A2FV-01 6 31779340 31779340 A - HSPA1L Frame_Shift_Del p.L137Wfs*9 0.09 TCGA-EW-A2FV-01 6 31851664 31851664 G - EHMT2 Frame_Shift_Del p.C946Afs*17 0.12 TCGA-EW-A2FV-01 6 31963535 31996273 6:31963535-31996273 - AL645922.1 large deletion 0.10 TCGA-EW-A2FV-01 6 32187987 32187987 G - NOTCH4 Frame_Shift_Del p.L412Sfs*26 0.09 TCGA-EW-A2FV-01 6 3267818 3267818 T - PSMG4 Intron 0.08 TCGA-EW-A2FV-01 6 32725658 32725658 C - HLA-DQB2 Intron 0.10 TCGA-EW-A2FV-01 6 32940576 32940576 C - BRD2 5'UTR 0.14 TCGA-EW-A2FV-01 6 33132687 33132687 A - COL11A2 Frame_Shift_Del p.F1516Sfs*12 0.09 TCGA-EW-A2FV-01 6 33154510 33154510 C - COL11A2 Frame_Shift_Del p.G231Afs*65 0.09 TCGA-EW-A2FV-01 6 33380026 33380026 C - PHF1 Intron 0.11 TCGA-EW-A2FV-01 6 33384493 33384493 A - CUTA Frame_Shift_Del p.P178Rfs*30 0.09 TCGA-EW-A2FV-01 6 33627302 33627302 C - ITPR3 Frame_Shift_Del p.H230Tfs*6 0.08 TCGA-EW-A2FV-01 6 33636379 33636379 C - ITPR3 Frame_Shift_Del p.K660Rfs*14 0.11 TCGA-EW-A2FV-01 6 33639886 33639886 A - ITPR3 Frame_Shift_Del p.S937Vfs*28 0.09 TCGA-EW-A2FV-01 6 34029748 34029748 A - GRM4 Frame_Shift_Del p.F265Sfs*110 0.09 TCGA-EW-A2FV-01 6 34494031 34494031 C - PACSIN1 5'UTR 0.09 TCGA-EW-A2FV-01 6 34506029 34506029 T - SPDEF 3'UTR 0.08 TCGA-EW-A2FV-01 6 34506080 34506080 G - SPDEF Frame_Shift_Del p.L327Sfs*34 0.09 TCGA-EW-A2FV-01 6 34735738 34735738 C - SNRPC Frame_Shift_Del p.P72Lfs*5 0.09 TCGA-EW-A2FV-01 6 34949553 34949553 C - ANKS1A Frame_Shift_Del p.T176Pfs*23 0.09 TCGA-EW-A2FV-01 6 35448115 35448115 C - TEAD3 Frame_Shift_Del p.V102Cfs*11 0.14 TCGA-EW-A2FV-01 6 35477609 35477609 T - TULP1 Frame_Shift_Del p.K199Rfs*38 0.08 TCGA-EW-A2FV-01 6 35745683 35745683 C - CLPSL2 Intron 0.08 TCGA-EW-A2FV-01 6 36485540 36485540 A - STK38 Frame_Shift_Del p.Q157Rfs*4 0.08 TCGA-EW-A2FV-01 6 36790849 36790849 A - CPNE5 Frame_Shift_Del p.S41Pfs*96 0.10 TCGA-EW-A2FV-01 6 36823651 36823651 T - PPIL1 Frame_Shift_Del p.T147Qfs*11 0.11 TCGA-EW-A2FV-01 6 36936719 36936719 A - MTCH1 Frame_Shift_Del p.F360Sfs*69 0.08 TCGA-EW-A2FV-01 6 36988502 36988502 T - FGD2 Frame_Shift_Del p.S408Pfs*54 0.09 TCGA-EW-A2FV-01 6 37411839 37411839 T - CMTR1 Frame_Shift_Del p.F67Lfs*64 0.09 TCGA-EW-A2FV-01 6 37441374 37441374 G - CMTR1 Frame_Shift_Del 0.14 TCGA-EW-A2FV-01 6 37451049 37451049 A - CCDC167 Frame_Shift_Del p.L70Ffs*19 0.09 TCGA-EW-A2FV-01 6 37612313 37612313 G - MDGA1 Frame_Shift_Del p.N788Tfs*8 0.10 TCGA-EW-A2FV-01 6 38084379 38084379 A - ZFAND3 Frame_Shift_Del p.K132Nfs*75 0.09 TCGA-EW-A2FV-01 6 38142900 38142900 T - BTBD9 Frame_Shift_Del p.N567Ifs*181 0.09 TCGA-EW-A2FV-01 6 38645088 38645088 T - GLO1 Frame_Shift_Del p.M180Wfs*4 0.09 TCGA-EW-A2FV-01 6 38757647 38757647 A - DNAH8 Frame_Shift_Del p.M669* 0.11 TCGA-EW-A2FV-01 6 38830129 38830129 A - DNAH8 Frame_Shift_Del p.T1853Qfs*29 0.08 TCGA-EW-A2FV-01 6 38851158 38851158 A - DNAH8 Frame_Shift_Del p.K2472Nfs*12 0.09 TCGA-EW-A2FV-01 6 39824144 39824144 C - DAAM2 Frame_Shift_Del p.E24Kfs*102 0.10 TCGA-EW-A2FV-01 6 41250380 41250380 T - TREM1 Frame_Shift_Del p.A54Lfs*4 0.09 TCGA-EW-A2FV-01 6 4130395 4130395 G - C6orf201 Frame_Shift_Del p.G135Vfs*12 0.09 TCGA-EW-A2FV-01 6 41566644 41566644 G - FOXP4 Frame_Shift_Del p.E672Rfs*13 0.11 TCGA-EW-A2FV-01 6 41705485 41705485 A - PGC Frame_Shift_Del p.S333Pfs*50 0.10 TCGA-EW-A2FV-01 6 42237186 42237186 G - TRERF1 Frame_Shift_Del p.P48Lfs*59 0.11 TCGA-EW-A2FV-01 6 42643796 42643796 G - UBR2 Frame_Shift_Del p.G1419Afs*77 0.09 TCGA-EW-A2FV-01 6 42930839 42930839 A - GNMT Frame_Shift_Del p.N162Tfs*40 0.20 TCGA-EW-A2FV-01 6 43014324 43014324 T - CUL7 Frame_Shift_Del p.I889Sfs*31 0.09 TCGA-EW-A2FV-01 6 43127547 43127547 G - PTK7 Frame_Shift_Del p.A974Pfs*30 0.09 TCGA-EW-A2FV-01 6 43152190 43152190 G - CUL9 Frame_Shift_Del p.E49Kfs*32 0.10 TCGA-EW-A2FV-01 6 43275438 43275438 G - CRIP3 Frame_Shift_Del p.T81Lfs*34 0.13 TCGA-EW-A2FV-01 6 43307627 43307627 G - ZNF318 Frame_Shift_Del p.P1370Qfs*46 0.10 TCGA-EW-A2FV-01 6 43308584 43308584 C - ZNF318 Frame_Shift_Del p.D1147Ifs*9 0.08 TCGA-EW-A2FV-01 6 43325053 43325053 C - ZNF318 Frame_Shift_Del p.S334Afs*2 0.08 TCGA-EW-A2FV-01 6 43410826 43410826 C - ABCC10 Frame_Shift_Del p.H783Tfs*14 0.10 TCGA-EW-A2FV-01 6 43418773 43418773 C - DLK2 Frame_Shift_Del p.R219Pfs*46 0.10 TCGA-EW-A2FV-01 6 43470348 43470348 T - TJAP1 Frame_Shift_Del p.F128Lfs*20 0.09 TCGA-EW-A2FV-01 6 43492325 43492325 T - XPO5 Frame_Shift_Del p.I1121Yfs*14 0.08 TCGA-EW-A2FV-01 6 43514407 43514407 C - XPO5 Frame_Shift_Del p.G748Dfs*23 0.08 TCGA-EW-A2FV-01 6 43618140 43618140 C - RSPH9 Frame_Shift_Del p.P87Lfs*13 0.09 TCGA-EW-A2FV-01 6 43643262 43643262 G - MRPS18A Frame_Shift_Del p.I115Mfs*5 0.09 TCGA-EW-A2FV-01 6 43648841 43648841 T - MRPS18A Frame_Shift_Del p.K45Rfs*4 0.09 TCGA-EW-A2FV-01 6 44102375 44102375 C - TMEM63B Frame_Shift_Del p.K20Rfs*56 0.09 TCGA-EW-A2FV-01 6 44221067 44221067 C - HSP90AB1 Frame_Shift_Del p.Q674Rfs*10 0.09 TCGA-EW-A2FV-01 6 44250017 44250017 C - TCTE1 Frame_Shift_Del p.D376Mfs*107 0.09 TCGA-EW-A2FV-01 6 45480079 45480079 C - RUNX2 Frame_Shift_Del p.P320Rfs*164 0.09 TCGA-EW-A2FV-01 6 46967931 46967931 T - GPR110 3'UTR 0.08 TCGA-EW-A2FV-01 6 46984428 46984428 C - GPR110 Frame_Shift_Del p.V230Lfs*15 0.11 TCGA-EW-A2FV-01 6 47221092 47221092 C - TNFRSF21 Frame_Shift_Del p.G470Afs*9 0.11 TCGA-EW-A2FV-01 6 47252065 47252065 C - TNFRSF21 Frame_Shift_Del p.K285Rfs*4 0.08 TCGA-EW-A2FV-01 6 47678609 47678609 A - GPR115 Frame_Shift_Del p.K97Nfs*14 0.09 TCGA-EW-A2FV-01 6 49437934 49437934 A - CENPQ Frame_Shift_Del p.R17Efs*23 0.11 TCGA-EW-A2FV-01 6 49489419 49489419 A - GLYATL3 Frame_Shift_Del p.K126Sfs*2 0.11 TCGA-EW-A2FV-01 6 49696503 49696503 T - CRISP3 Frame_Shift_Del p.K249Nfs*28 0.09 TCGA-EW-A2FV-01 6 50682959 50682959 C - TFAP2D Frame_Shift_Del p.Y59Tfs*34 0.08 TCGA-EW-A2FV-01 6 50803958 50803958 C - TFAP2B Frame_Shift_Del p.L263Sfs*26 0.11 TCGA-EW-A2FV-01 6 51656113 51656113 C - PKHD1 Frame_Shift_Del p.T2788Pfs*2 0.08 TCGA-EW-A2FV-01 6 51768802 51768802 T - PKHD1 Frame_Shift_Del p.I2283Ffs*14 0.08 TCGA-EW-A2FV-01 6 52369408 52369408 C - TRAM2 Frame_Shift_Del p.R340Sfs*15 0.09 TCGA-EW-A2FV-01 6 52380846 52380846 A - TRAM2 Frame_Shift_Del p.H124Ifs*5 0.08 TCGA-EW-A2FV-01 6 52546638 52546638 T - TMEM14A Frame_Shift_Del p.F34Lfs*20 0.08 TCGA-EW-A2FV-01 6 54214552 54214552 A - TINAG Frame_Shift_Del p.N314Mfs*29 0.08 TCGA-EW-A2FV-01 6 56336022 56336022 T - DST Frame_Shift_Del p.K4778Nfs*6 0.08 TCGA-EW-A2FV-01 6 56480437 56480437 T - DST Intron 0.09 TCGA-EW-A2FV-01 6 564867 564867 A - EXOC2 Frame_Shift_Del p.F502Lfs*4 0.08 TCGA-EW-A2FV-01 6 62757885 62757885 C - KHDRBS2 Frame_Shift_Del p.K79Nfs*10 0.08 TCGA-EW-A2FV-01 6 64472477 64472477 A - EYS Frame_Shift_Del p.S2650Lfs*32 0.08 TCGA-EW-A2FV-01 6 70500277 70500277 A - LMBRD1 Frame_Shift_Del p.S53Lfs*2 0.08 TCGA-EW-A2FV-01 6 70778323 70778323 G - COL19A1 Frame_Shift_Del p.I395Yfs*63 0.08 TCGA-EW-A2FV-01 6 73951367 73951367 C - KHDC1 Frame_Shift_Del p.G200Efs*9 0.12 TCGA-EW-A2FV-01 6 7414618 7414618 A - RIOK1 Frame_Shift_Del p.E533Kfs*22 0.09 TCGA-EW-A2FV-01 6 75796215 75796215 T - COL12A1 3'UTR 0.08 TCGA-EW-A2FV-01 6 75798838 75798838 C - COL12A1 Frame_Shift_Del p.L2999Cfs*78 0.09 TCGA-EW-A2FV-01 6 76124566 76124566 T - FILIP1 Frame_Shift_Del p.K41Nfs*19 0.09 TCGA-EW-A2FV-01 6 76558143 76558143 A - MYO6 Frame_Shift_Del p.I327Lfs*14 0.08 TCGA-EW-A2FV-01 6 7910808 7910808 C - TXNDC5 Frame_Shift_Del p.A68Pfs*72 0.16 TCGA-EW-A2FV-01 6 79913308 79913308 T - HMGN3 Frame_Shift_Del p.T46Hfs*49 0.09 TCGA-EW-A2FV-01 6 80228463 80228463 T - LCA5 Frame_Shift_Del p.N50Ifs*61 0.08 TCGA-EW-A2FV-01 6 80406250 80406250 T - SH3BGRL2 Frame_Shift_Del p.L95* 0.08 TCGA-EW-A2FV-01 6 82920532 82920532 T - IBTK Frame_Shift_Del p.E837Nfs*5 0.13 TCGA-EW-A2FV-01 6 82941511 82941511 C - IBTK Frame_Shift_Del p.G156Vfs*54 0.11 TCGA-EW-A2FV-01 6 83851677 83851677 T - DOPEY1 Frame_Shift_Del p.S1819Qfs*2 0.08 TCGA-EW-A2FV-01 6 83938587 83938587 G - ME1 Frame_Shift_Del p.L364* 0.08 TCGA-EW-A2FV-01 6 84904698 84904698 T - KIAA1009 Frame_Shift_Del p.I311Lfs*13 0.08 TCGA-EW-A2FV-01 6 87970921 87970921 A - ZNF292 Frame_Shift_Del p.A2527Qfs*4 0.09 TCGA-EW-A2FV-01 6 88138402 88138402 T - C6ORF165 Frame_Shift_Del p.G341Vfs*25 0.08 TCGA-EW-A2FV-01 6 88773865 88773865 T - SPACA1 Frame_Shift_Del p.F221Lfs*3 0.08 TCGA-EW-A2FV-01 6 90356296 90356296 A - MDN1 Frame_Shift_Del p.F5474Lfs*21 0.10 TCGA-EW-A2FV-01 6 90371149 90371149 C - MDN1 Splice_Site p.X4905_splice 0.09 TCGA-EW-A2FV-01 6 97247126 97247126 A - GPR63 Frame_Shift_Del p.F161Sfs*5 0.13 TCGA-EW-A2FV-01 6 99858807 99858807 G - PNISR Frame_Shift_Del p.P104Lfs*58 0.08 TCGA-EW-A2FV-01 7 100000151 100000151 T - ZCWPW1 Frame_Shift_Del p.T487Pfs*24 0.09 TCGA-EW-A2FV-01 7 100002712 100002712 T - ZCWPW1 Frame_Shift_Del p.K392Sfs*14 0.10 TCGA-EW-A2FV-01 7 100170316 100170316 C - SAP25 Frame_Shift_Del p.Q93Sfs*14 0.12 TCGA-EW-A2FV-01 7 100170765 100170765 G - SAP25 Frame_Shift_Del p.K10Sfs*97 0.11 TCGA-EW-A2FV-01 7 100253163 100253163 C - ACTL6B Frame_Shift_Del p.G50Afs*40 0.08 TCGA-EW-A2FV-01 7 100350061 100350061 A - ZAN Frame_Shift_Del p.K779Nfs*222 0.10 TCGA-EW-A2FV-01 7 100350328 100350328 C - ZAN Frame_Shift_Del p.P868Qfs*133 0.09 TCGA-EW-A2FV-01 7 100453360 100453360 G - SLC12A9 Frame_Shift_Del p.G118Afs*104 0.09 TCGA-EW-A2FV-01 7 100485384 100485384 A - SRRT Frame_Shift_Del p.K745Rfs*37 0.09 TCGA-EW-A2FV-01 7 102246390 102246390 C - RASA4 Frame_Shift_Del p.E115Rfs*58 0.09 TCGA-EW-A2FV-01 7 1022891 1022891 G - CYP2W1 Frame_Shift_Del p.L17Cfs*40 0.23 TCGA-EW-A2FV-01 7 102566782 102566782 C - FBXL13 Frame_Shift_Del p.V273Sfs*45 0.08 TCGA-EW-A2FV-01 7 105122810 105122810 T - PUS7 Frame_Shift_Del p.N333Tfs*3 0.10 TCGA-EW-A2FV-01 7 105254897 105254897 T - ATXN7L1 Frame_Shift_Del p.V629Sfs*52 0.10 TCGA-EW-A2FV-01 7 105254946 105254946 G - ATXN7L1 Frame_Shift_Del p.P612Lfs*69 0.09 TCGA-EW-A2FV-01 7 105283362 105283362 C - ATXN7L1 Frame_Shift_Del p.G262Efs*7 0.10 TCGA-EW-A2FV-01 7 106827069 106827069 T - HBP1 Frame_Shift_Del p.F237Lfs*26 0.10 TCGA-EW-A2FV-01 7 106836547 106836547 A - HBP1 Frame_Shift_Del p.K447Nfs*18 0.16 TCGA-EW-A2FV-01 7 107013099 107013099 T - COG5 Frame_Shift_Del p.N290Ifs*6 0.09 TCGA-EW-A2FV-01 7 107224361 107224361 A - BCAP29 Frame_Shift_Del p.I44Lfs*16 0.08 TCGA-EW-A2FV-01 7 107572801 107572801 C - LAMB1 Frame_Shift_Del p.A1404Pfs*49 0.15 TCGA-EW-A2FV-01 7 107595952 107595952 A - LAMB1 Frame_Shift_Del p.T939Lfs*122 0.13 TCGA-EW-A2FV-01 7 107689911 107689911 T - LAMB4 Frame_Shift_Del p.T1328Lfs*19 0.08 TCGA-EW-A2FV-01 7 111575633 111575633 T - DOCK4 Frame_Shift_Del p.K343Sfs*2 0.12 TCGA-EW-A2FV-01 7 112112857 112112857 C - IFRD1 Frame_Shift_Del p.P404Qfs*2 0.10 TCGA-EW-A2FV-01 7 1131574 1131574 C - GPER1 Frame_Shift_Del p.I72Sfs*8 0.08 TCGA-EW-A2FV-01 7 113518042 113518042 C - PPP1R3A Frame_Shift_Del p.Q1036Nfs*48 0.10 TCGA-EW-A2FV-01 7 11632925 11632925 T - THSD7A Frame_Shift_Del p.E410Nfs*68 0.09 TCGA-EW-A2FV-01 7 117351698 117351698 T - CTTNBP2 Frame_Shift_Del p.R1629Efs*11 0.08 TCGA-EW-A2FV-01 7 117365202 117365202 T - CTTNBP2 Frame_Shift_Del p.R1389Dfs*19 0.09 TCGA-EW-A2FV-01 7 1195168 1195168 T - ZFAND2A Frame_Shift_Del p.K68Rfs*? 0.11 TCGA-EW-A2FV-01 7 120382646 120382646 A - KCND2 Frame_Shift_Del p.T488Pfs*89 0.10 TCGA-EW-A2FV-01 7 120607639 120607639 A - ING3 Frame_Shift_Del p.K165Nfs*21 0.09 TCGA-EW-A2FV-01 7 121766486 121766486 T - AASS Frame_Shift_Del p.M139Wfs*9 0.10 TCGA-EW-A2FV-01 7 121960160 121960160 A - CADPS2 3'UTR 0.16 TCGA-EW-A2FV-01 7 122768990 122768990 T - SLC13A1 Frame_Shift_Del p.I348Lfs*2 0.10 TCGA-EW-A2FV-01 7 127222292 127222292 G - GCC1 Frame_Shift_Del p.L702Cfs*30 0.10 TCGA-EW-A2FV-01 7 127953286 127953286 T - RBM28 Frame_Shift_Del p.K696Sfs*6 0.11 TCGA-EW-A2FV-01 7 127954840 127954840 G - RBM28 Frame_Shift_Del p.S675Hfs*15 0.08 TCGA-EW-A2FV-01 7 127979335 127979335 T - RBM28 Frame_Shift_Del p.A107Pfs*10 0.09 TCGA-EW-A2FV-01 7 127979721 127979721 T - RBM28 Frame_Shift_Del p.K81Nfs*2 0.11 TCGA-EW-A2FV-01 7 128138190 128138190 A - METTL2B Frame_Shift_Del p.G306Vfs*10 0.15 TCGA-EW-A2FV-01 7 128388705 128388705 A - CALU Frame_Shift_Del p.K32Rfs*41 0.13 TCGA-EW-A2FV-01 7 128449541 128449541 A - CCDC136 Frame_Shift_Del p.K549Sfs*60 0.12 TCGA-EW-A2FV-01 7 128449561 128449561 A - CCDC136 Frame_Shift_Del p.K555Rfs*54 0.12 TCGA-EW-A2FV-01 7 128481392 128481392 C - FLNC Frame_Shift_Del p.P662Hfs*9 0.08 TCGA-EW-A2FV-01 7 128522022 128522022 G - KCP RNA 0.11 TCGA-EW-A2FV-01 7 128849133 128849133 T - SMO Frame_Shift_Del p.F455Lfs*40 0.08 TCGA-EW-A2FV-01 7 128851575 128851575 C - SMO Frame_Shift_Del p.Q635Rfs*141 0.12 TCGA-EW-A2FV-01 7 130021555 130021555 T - CPA1 Frame_Shift_Del p.L79Wfs*11 0.12 TCGA-EW-A2FV-01 7 130039983 130039983 T - CEP41 Frame_Shift_Del p.P292Hfs*16 0.11 TCGA-EW-A2FV-01 7 130042547 130042547 G - CEP41 Frame_Shift_Del p.F173Sfs*4 0.08 TCGA-EW-A2FV-01 7 131866894 131866894 G - PLXNA4 Frame_Shift_Del p.Q1072Rfs*18 0.08 TCGA-EW-A2FV-01 7 134252984 134252984 T - AKR1B15 Frame_Shift_Del p.F76Sfs*21 0.12 TCGA-EW-A2FV-01 7 135106951 135106951 T - CNOT4 Frame_Shift_Del p.N109Tfs*6 0.08 TCGA-EW-A2FV-01 7 135661814 135661814 T - MTPN Frame_Shift_Del p.N12Tfs*7 0.09 TCGA-EW-A2FV-01 7 139258036 139258036 G - HIPK2 Frame_Shift_Del p.S1079Afs*68 0.12 TCGA-EW-A2FV-01 7 139741500 139741500 C - PARP12 Frame_Shift_Del p.D376Tfs*25 0.09 TCGA-EW-A2FV-01 7 140082306 140082306 A - SLC37A3 Frame_Shift_Del p.Q8Kfs*15 0.10 TCGA-EW-A2FV-01 7 140534451 140534451 T - BRAF Frame_Shift_Del p.K154Nfs*28 0.09 TCGA-EW-A2FV-01 7 142458517 142458517 C - PRSS1 Frame_Shift_Del p.L52Sfs*20 0.09 TCGA-EW-A2FV-01 7 142965238 142965238 T - GSTK1 Frame_Shift_Del p.F254Lfs*25 0.11 TCGA-EW-A2FV-01 7 142983157 142983157 C - TMEM139 Frame_Shift_Del p.V38Lfs*62 0.12 TCGA-EW-A2FV-01 7 142983174 142983174 T - TMEM139 Frame_Shift_Del p.L43Sfs*57 0.09 TCGA-EW-A2FV-01 7 142983232 142983232 G - TMEM139 Frame_Shift_Del p.L63Ffs*37 0.08 TCGA-EW-A2FV-01 7 143013362 143013362 C - CLCN1 Frame_Shift_Del p.Q21Sfs*56 0.11 TCGA-EW-A2FV-01 7 143268946 143268946 G - CTAGE15 Frame_Shift_Del p.L14Wfs*17 0.08 TCGA-EW-A2FV-01 7 143826253 143826253 C - OR2A14 Frame_Shift_Del p.Q17Rfs*65 0.09 TCGA-EW-A2FV-01 7 144098977 144098977 T - NOBOX Frame_Shift_Del p.R93Gfs*81 0.12 TCGA-EW-A2FV-01 7 1476394 1476394 C - MICALL2 Frame_Shift_Del p.D859Tfs*17 0.12 TCGA-EW-A2FV-01 7 148701003 148701003 G - PDIA4 Frame_Shift_Del p.S608Vfs*20 0.10 TCGA-EW-A2FV-01 7 148964035 148964035 G - ZNF783 Frame_Shift_Del 0.12 TCGA-EW-A2FV-01 7 149129289 149129289 C - ZNF777 Frame_Shift_Del p.V692Sfs*253 0.14 TCGA-EW-A2FV-01 7 149172448 149172448 G - ZNF746 Frame_Shift_Del p.P322Lfs*71 0.10 TCGA-EW-A2FV-01 7 149477150 149477150 T - SSPO RNA 0.14 TCGA-EW-A2FV-01 7 149559070 149559070 C - ZNF862 Frame_Shift_Del p.P942Hfs*3 0.11 TCGA-EW-A2FV-01 7 150027765 150027765 G - ZBED6CL Frame_Shift_Del p.P93Rfs*15 0.11 TCGA-EW-A2FV-01 7 150707721 150707721 T - NOS3 Frame_Shift_Del p.C908Afs*50 0.09 TCGA-EW-A2FV-01 7 150749270 150749270 C - ASIC3 Frame_Shift_Del p.L469Wfs*102 0.12 TCGA-EW-A2FV-01 7 150754186 150754186 T - CDK5 Frame_Shift_Del p.K33Nfs*3 0.08 TCGA-EW-A2FV-01 7 151810393 151810393 A - GALNT11 Frame_Shift_Del p.R383Gfs*13 0.12 TCGA-EW-A2FV-01 7 151902260 151902260 T - KMT2C Frame_Shift_Del p.T1298Pfs*5 0.09 TCGA-EW-A2FV-01 7 151949118 151949118 T - KMT2C Frame_Shift_Del p.E510Kfs*26 0.10 TCGA-EW-A2FV-01 7 152027690 152027690 T - KMT2C Frame_Shift_Del p.I129Sfs*17 0.09 TCGA-EW-A2FV-01 7 1526614 1526614 A - INTS1 Frame_Shift_Del p.S924Pfs*68 0.08 TCGA-EW-A2FV-01 7 153584722 153584722 A - DPP6 5'UTR 0.09 TCGA-EW-A2FV-01 7 154863106 154863106 G - HTR5A Frame_Shift_Del p.A167Hfs*28 0.09 TCGA-EW-A2FV-01 7 154875968 154875968 G - HTR5A Frame_Shift_Del p.A283Pfs*54 0.10 TCGA-EW-A2FV-01 7 155473519 155473519 T - RBM33 Frame_Shift_Del p.Y162Mfs*16 0.09 TCGA-EW-A2FV-01 7 155504066 155504066 C - RBM33 Frame_Shift_Del p.P374Rfs*4 0.08 TCGA-EW-A2FV-01 7 155604529 155604529 C - SHH Frame_Shift_Del p.R96Sfs*2 0.11 TCGA-EW-A2FV-01 7 157023785 157023785 A - UBE3C Frame_Shift_Del p.K750Sfs*28 0.09 TCGA-EW-A2FV-01 7 1784377 1784377 C - ELFN1 Frame_Shift_Del p.Y51Tfs*115 0.09 TCGA-EW-A2FV-01 7 18806746 18806746 T - HDAC9 Frame_Shift_Del p.S730Pfs*44 0.15 TCGA-EW-A2FV-01 7 21639492 21639492 T - DNAH11 Frame_Shift_Del p.Q921Rfs*3 0.08 TCGA-EW-A2FV-01 7 21784620 21784620 A - DNAH11 Frame_Shift_Del p.N2824Tfs*5 0.09 TCGA-EW-A2FV-01 7 22184682 22184682 T - RAPGEF5 Frame_Shift_Del p.K569Nfs*15 0.09 TCGA-EW-A2FV-01 7 22769312 22769312 G - IL6 Intron 0.09 TCGA-EW-A2FV-01 7 2289527 2289527 C - NUDT1 Frame_Shift_Del p.L87Cfs*108 0.08 TCGA-EW-A2FV-01 7 26232168 26232168 T - HNRNPA2B1 Frame_Shift_Del p.S344Vfs*27 0.09 TCGA-EW-A2FV-01 7 26251774 26251774 T - CBX3 Frame_Shift_Del p.Y168Mfs*5 0.10 TCGA-EW-A2FV-01 7 27147698 27147698 G - HOXA3 Frame_Shift_Del p.H390Tfs*114 0.12 TCGA-EW-A2FV-01 7 27147760 27147760 C - HOXA3 Frame_Shift_Del p.G369Afs*7 0.11 TCGA-EW-A2FV-01 7 27183230 27183230 T - HOXA5 5'UTR 0.11 TCGA-EW-A2FV-01 7 27185344 27185344 T - HOXA6 Frame_Shift_Del p.K212Rfs*? 0.08 TCGA-EW-A2FV-01 7 27194581 27194581 C - HOXA7 Frame_Shift_Del p.D214Tfs*35 0.13 TCGA-EW-A2FV-01 7 27669013 27669013 A - HIBADH Frame_Shift_Del p.F154Sfs*10 0.08 TCGA-EW-A2FV-01 7 28758425 28758425 C - CREB5 Frame_Shift_Del p.M175Cfs*21 0.08 TCGA-EW-A2FV-01 7 30830967 30830967 A - FAM188B Frame_Shift_Del p.T285Pfs*43 0.11 TCGA-EW-A2FV-01 7 30890158 30890158 G - FAM188B Frame_Shift_Del p.A512Pfs*24 0.08 TCGA-EW-A2FV-01 7 31904627 31904627 A - PDE1C Frame_Shift_Del p.Y287Tfs*4 0.09 TCGA-EW-A2FV-01 7 32529899 32529899 C - LSM5 Intron 0.08 TCGA-EW-A2FV-01 7 33136152 33136152 G - RP9 Frame_Shift_Del p.M141Cfs*15 0.08 TCGA-EW-A2FV-01 7 34724198 34724198 T - NPSR1 Frame_Shift_Del p.F62Lfs*22 0.12 TCGA-EW-A2FV-01 7 36320803 36320803 T - EEPD1 Frame_Shift_Del p.A338Lfs*27 0.09 TCGA-EW-A2FV-01 7 36397006 36397006 T - KIAA0895 Frame_Shift_Del p.K124Nfs*29 0.08 TCGA-EW-A2FV-01 7 38908806 38908806 G - VPS41 Frame_Shift_Del p.N37Mfs*3 0.10 TCGA-EW-A2FV-01 7 39745800 39745800 A - RALA Frame_Shift_Del p.S194Vfs*2 0.10 TCGA-EW-A2FV-01 7 40228118 40228118 G - SUGCT Frame_Shift_Del p.P93Hfs*31 0.09 TCGA-EW-A2FV-01 7 43506085 43506085 A - HECW1 Frame_Shift_Del p.I946Sfs*38 0.09 TCGA-EW-A2FV-01 7 43680222 43680222 T - COA1 Frame_Shift_Del p.K97Nfs*26 0.09 TCGA-EW-A2FV-01 7 43906323 43906323 G - MRPS24 Frame_Shift_Del p.S160* 0.09 TCGA-EW-A2FV-01 7 43992278 43992278 A - UBE2D4 Frame_Shift_Del p.K144Nfs*12 0.11 TCGA-EW-A2FV-01 7 44178494 44178494 C - MYL7 3'UTR 0.14 TCGA-EW-A2FV-01 7 44191921 44191921 T - GCK Frame_Shift_Del p.K105Nfs*12 0.08 TCGA-EW-A2FV-01 7 44247039 44247039 C - YKT6 Frame_Shift_Del p.P115Lfs*25 0.09 TCGA-EW-A2FV-01 7 4798787 4798787 C - FOXK1 Frame_Shift_Del p.P451Lfs*7 0.08 TCGA-EW-A2FV-01 7 48134408 48134408 A - UPP1 Frame_Shift_Del p.A11Lfs*12 0.10 TCGA-EW-A2FV-01 7 48260897 48260897 T - ABCA13 Frame_Shift_Del p.F155Lfs*11 0.08 TCGA-EW-A2FV-01 7 48313885 48313885 A - ABCA13 Frame_Shift_Del p.N1542Ifs*6 0.10 TCGA-EW-A2FV-01 7 51096308 51096308 G - COBL Frame_Shift_Del p.L829* 0.10 TCGA-EW-A2FV-01 7 5338962 5338962 C - SLC29A4 Frame_Shift_Del p.G373Afs*96 0.09 TCGA-EW-A2FV-01 7 5360192 5360192 A - TNRC18 Frame_Shift_Del p.Y2203Tfs*14 0.12 TCGA-EW-A2FV-01 7 5416564 5416564 C - TNRC18 Frame_Shift_Del p.G841Afs*32 0.09 TCGA-EW-A2FV-01 7 5417103 5417103 C - TNRC18 Frame_Shift_Del p.G787Afs*86 0.24 TCGA-EW-A2FV-01 7 550563 550563 G - PDGFA Frame_Shift_Del p.T113Rfs*6 0.10 TCGA-EW-A2FV-01 7 56022659 56022659 G - MRPS17 Frame_Shift_Del p.D62Ifs*16 0.10 TCGA-EW-A2FV-01 7 56174102 56174102 G - CHCHD2 Frame_Shift_Del p.P2Rfs*21 0.14 TCGA-EW-A2FV-01 7 6042236 6042236 C - PMS2 Frame_Shift_Del p.A129Rfs*7 0.09 TCGA-EW-A2FV-01 7 63982313 63982313 T - ZNF680 Frame_Shift_Del p.A274Pfs*13 0.10 TCGA-EW-A2FV-01 7 6449533 6449533 C - DAGLB Frame_Shift_Del p.V652Sfs*71 0.11 TCGA-EW-A2FV-01 7 65150699 65150699 C T INTS4L2 RNA 0.21 TCGA-EW-A2FV-01 7 65150718 65150718 T A INTS4L2 RNA 0.25 TCGA-EW-A2FV-01 7 66453318 66453318 A - SBDS 3'UTR 0.08 TCGA-EW-A2FV-01 7 66660215 66660215 G - TYW1 Frame_Shift_Del p.W623Cfs*15 0.10 TCGA-EW-A2FV-01 7 6777507 6777507 G - PMS2CL RNA 0.09 TCGA-EW-A2FV-01 7 70231167 70231167 T - AUTS2 Frame_Shift_Del p.S513Pfs*81 0.10 TCGA-EW-A2FV-01 7 70231260 70231260 C - AUTS2 Frame_Shift_Del p.F543Lfs*51 0.09 TCGA-EW-A2FV-01 7 72398983 72398983 C - POM121 Frame_Shift_Del p.A98Lfs*10 0.12 TCGA-EW-A2FV-01 7 72663998 72663998 T G GTF2IRD2P1 RNA 0.44 TCGA-EW-A2FV-01 7 72717387 72717387 G - NSUN5 3'UTR 0.09 TCGA-EW-A2FV-01 7 72732704 72732704 A - TRIM50 Frame_Shift_Del p.F244Sfs*16 0.09 TCGA-EW-A2FV-01 7 73119503 73119503 T - STX1A Frame_Shift_Del p.N87Tfs*7 0.10 TCGA-EW-A2FV-01 7 73279641 73279641 T - WBSCR28 Frame_Shift_Del p.L132Cfs*7 0.08 TCGA-EW-A2FV-01 7 73470654 73470654 G - ELN Frame_Shift_Del p.G403Afs*71 0.09 TCGA-EW-A2FV-01 7 73474236 73474236 G - ELN Frame_Shift_Del p.V479Wfs*134 0.08 TCGA-EW-A2FV-01 7 73474747 73474747 G - ELN Frame_Shift_Del p.V555Lfs*58 0.08 TCGA-EW-A2FV-01 7 73790552 73790552 G - CLIP2 Frame_Shift_Del p.L609* 0.11 TCGA-EW-A2FV-01 7 7412724 7412724 T - COL28A1 Frame_Shift_Del p.N938Mfs*12 0.09 TCGA-EW-A2FV-01 7 7421240 7421240 C - COL28A1 Frame_Shift_Del p.E714Nfs*58 0.08 TCGA-EW-A2FV-01 7 75068430 75068430 A - POM121C Frame_Shift_Del p.F100Lfs*8 0.08 TCGA-EW-A2FV-01 7 75615008 75615008 G - POR Frame_Shift_Del p.E505Rfs*40 0.14 TCGA-EW-A2FV-01 7 76825995 76825995 A - FGL2 Frame_Shift_Del p.F307Lfs*47 0.08 TCGA-EW-A2FV-01 7 77212919 77212919 A - PTPN12 Frame_Shift_Del p.N112Ifs*3 0.08 TCGA-EW-A2FV-01 7 77583113 77583113 G - PHTF2 Frame_Shift_Del p.T715Qfs*2 0.08 TCGA-EW-A2FV-01 7 77975269 77975269 T - MAGI2 Frame_Shift_Del p.T399Qfs*22 0.09 TCGA-EW-A2FV-01 7 78130959 78130959 T - MAGI2 Frame_Shift_Del p.E300Dfs*71 0.08 TCGA-EW-A2FV-01 7 8153515 8153515 G - ICA1 3'UTR 0.10 TCGA-EW-A2FV-01 7 8183551 8183551 T - ICA1 Frame_Shift_Del p.I286Sfs*17 0.09 TCGA-EW-A2FV-01 7 82584226 82584226 A - PCLO Frame_Shift_Del p.Y2015Mfs*3 0.17 TCGA-EW-A2FV-01 7 82595089 82595089 T - PCLO Frame_Shift_Del p.T1339Qfs*22 0.08 TCGA-EW-A2FV-01 7 82997109 82997109 T - SEMA3E Frame_Shift_Del p.K707Nfs*10 0.09 TCGA-EW-A2FV-01 7 83029447 83029447 T - SEMA3E Frame_Shift_Del p.K421Nfs*5 0.09 TCGA-EW-A2FV-01 7 86509829 86509829 A - KIAA1324L Frame_Shift_Del p.F1016Lfs*6 0.09 TCGA-EW-A2FV-01 7 87165777 87165777 T - ABCB1 Frame_Shift_Del p.A828Lfs*2 0.09 TCGA-EW-A2FV-01 7 89927128 89927128 T - C7orf63 Frame_Shift_Del p.L615Wfs*4 0.09 TCGA-EW-A2FV-01 7 90012327 90012327 A - GTPBP10 Frame_Shift_Del p.M280Wfs*13 0.09 TCGA-EW-A2FV-01 7 92826557 92826557 A - HEPACAM2 Frame_Shift_Del p.S400Qfs*77 0.11 TCGA-EW-A2FV-01 7 93106929 93106929 G - CALCR Frame_Shift_Del p.P104Rfs*57 0.08 TCGA-EW-A2FV-01 7 94041418 94041418 A - COL1A2 Frame_Shift_Del p.E465Kfs*217 0.09 TCGA-EW-A2FV-01 7 94058587 94058587 A - COL1A2 Frame_Shift_Del p.N1267Tfs*20 0.11 TCGA-EW-A2FV-01 7 943909 943909 C - ADAP1 Frame_Shift_Del p.A168Pfs*7 0.10 TCGA-EW-A2FV-01 7 94539624 94539624 A - PPP1R9A Frame_Shift_Del p.N68Tfs*33 0.16 TCGA-EW-A2FV-01 7 96114149 96114149 T - C7orf76 Frame_Shift_Del p.K82Rfs*7 0.09 TCGA-EW-A2FV-01 7 97823585 97823585 G - LMTK2 Frame_Shift_Del p.V1271Cfs*64 0.11 TCGA-EW-A2FV-01 7 97870409 97870409 C - TECPR1 Frame_Shift_Del p.E269Kfs*67 0.15 TCGA-EW-A2FV-01 7 97875277 97875277 C - TECPR1 Frame_Shift_Del p.S61Tfs*29 0.11 TCGA-EW-A2FV-01 7 97935781 97935781 T - BAIAP2L1 Frame_Shift_Del p.E404Gfs*5 0.08 TCGA-EW-A2FV-01 7 98771334 98771334 T - KPNA7 Frame_Shift_Del p.K516Nfs*17 0.10 TCGA-EW-A2FV-01 7 98793706 98793706 C - KPNA7 Splice_Site p.X95_splice 0.10 TCGA-EW-A2FV-01 7 99247807 99247807 A - CYP3A5 Frame_Shift_Del p.F434Lfs*11 0.08 TCGA-EW-A2FV-01 7 99312179 99312179 T - CYP3A7 Frame_Shift_Del p.K266Sfs*9 0.08 TCGA-EW-A2FV-01 7 99447289 99447289 T - CYP3A43 Frame_Shift_Del p.L216Wfs*7 0.09 TCGA-EW-A2FV-01 7 99526796 99526796 C - GJC3 Frame_Shift_Del p.A150Qfs*29 0.11 TCGA-EW-A2FV-01 7 99565795 99565795 T - AZGP1 Frame_Shift_Del p.N199Ifs*25 0.10 TCGA-EW-A2FV-01 7 99700365 99700365 A - AP4M1 Frame_Shift_Del p.N73Tfs*8 0.09 TCGA-EW-A2FV-01 7 99705124 99705124 G - TAF6 Frame_Shift_Del p.S631Afs*? 0.13 TCGA-EW-A2FV-01 7 99707842 99707842 A - TAF6 Frame_Shift_Del p.L417Wfs*12 0.08 TCGA-EW-A2FV-01 7 99754113 99754113 G - C7orf43 Frame_Shift_Del p.P379Lfs*24 0.09 TCGA-EW-A2FV-01 7 99764283 99764283 C - GAL3ST4 Frame_Shift_Del p.D91Tfs*26 0.09 TCGA-EW-A2FV-01 7 99774763 99774763 G - GPC2 Frame_Shift_Del p.G21Dfs*26 0.09 TCGA-EW-A2FV-01 7 99818228 99818228 G - PVRIG Frame_Shift_Del p.V178Sfs*146 0.09 TCGA-EW-A2FV-01 8 100712026 100712026 A - VPS13B Frame_Shift_Del p.I2134Ffs*9 0.08 TCGA-EW-A2FV-01 8 101642615 101642615 G - SNX31 Frame_Shift_Del p.M88Wfs*6 0.09 TCGA-EW-A2FV-01 8 105257155 105257155 A - RIMS2 Frame_Shift_Del p.K1117Nfs*2 0.09 TCGA-EW-A2FV-01 8 105503331 105503331 G - LRP12 Frame_Shift_Del p.P717Qfs*3 0.10 TCGA-EW-A2FV-01 8 110417237 110417237 A - PKHD1L1 Frame_Shift_Del p.N517Tfs*16 0.10 TCGA-EW-A2FV-01 8 119391879 119391879 T - SAMD12 Frame_Shift_Del p.N128Tfs*13 0.09 TCGA-EW-A2FV-01 8 119936876 119936876 T - TNFRSF11B Frame_Shift_Del p.T315Qfs*2 0.10 TCGA-EW-A2FV-01 8 120252440 120252440 T - MAL2 Frame_Shift_Del p.F114Lfs*22 0.09 TCGA-EW-A2FV-01 8 121379471 121379471 C - COL14A1 Frame_Shift_Del p.P1715Lfs*55 0.09 TCGA-EW-A2FV-01 8 121823624 121823624 G - SNTB1 Frame_Shift_Del p.L154Cfs*10 0.14 TCGA-EW-A2FV-01 8 123965035 123965035 C - ZHX2 Frame_Shift_Del p.P430Hfs*22 0.12 TCGA-EW-A2FV-01 8 124195488 124195488 A - FAM83A Frame_Shift_Del p.K132Nfs*34 0.12 TCGA-EW-A2FV-01 8 124518662 124518662 T - FBXO32 Frame_Shift_Del p.K268Nfs*16 0.11 TCGA-EW-A2FV-01 8 125384140 125384140 G - TMEM65 Frame_Shift_Del p.L87Cfs*28 0.09 TCGA-EW-A2FV-01 8 125579356 125579356 T - MTSS1 Frame_Shift_Del p.S228Afs*2 0.08 TCGA-EW-A2FV-01 8 125597329 125597329 T - MTSS1 Frame_Shift_Del p.R155Efs*34 0.08 TCGA-EW-A2FV-01 8 12586745 12586745 A - LONRF1 Frame_Shift_Del p.R596Efs*55 0.12 TCGA-EW-A2FV-01 8 126011765 126011765 G - SQLE Frame_Shift_Del p.V41Cfs*69 0.08 TCGA-EW-A2FV-01 8 132002779 132002779 G - ADCY8 Frame_Shift_Del p.Q324Rfs*8 0.08 TCGA-EW-A2FV-01 8 132980596 132980596 A - EFR3A Frame_Shift_Del p.D306Mfs*14 0.08 TCGA-EW-A2FV-01 8 133053331 133053331 A - OC90 Frame_Shift_Del p.S140Afs*31 0.08 TCGA-EW-A2FV-01 8 133067234 133067234 G - OC90 Frame_Shift_Del p.H14Mfs*63 0.09 TCGA-EW-A2FV-01 8 134042152 134042152 G - TG Frame_Shift_Del p.D2376Tfs*37 0.09 TCGA-EW-A2FV-01 8 134269073 134269073 G - NDRG1 Frame_Shift_Del p.I163Sfs*3 0.08 TCGA-EW-A2FV-01 8 135490691 135490691 C - ZFAT 3'UTR 0.12 TCGA-EW-A2FV-01 8 139603678 139603678 G - COL22A1 Frame_Shift_Del p.P1561Lfs*63 0.09 TCGA-EW-A2FV-01 8 139703091 139703091 G - COL22A1 Frame_Shift_Del p.G928Vfs*74 0.09 TCGA-EW-A2FV-01 8 140744326 140744326 C - TRAPPC9 Frame_Shift_Del p.A1157Pfs*173 0.08 TCGA-EW-A2FV-01 8 141461237 141461237 C - TRAPPC9 Frame_Shift_Del p.G177Afs*110 0.11 TCGA-EW-A2FV-01 8 141551358 141551358 G - AGO2 Frame_Shift_Del p.R647Afs*48 0.09 TCGA-EW-A2FV-01 8 142444117 142444117 C - PTP4A3 3'Flank 0.09 TCGA-EW-A2FV-01 8 143867040 143867040 G - LY6D Frame_Shift_Del p.P39Rfs*16 0.08 TCGA-EW-A2FV-01 8 144461590 144461590 A - RHPN1 Frame_Shift_Del p.E286Dfs*37 0.09 TCGA-EW-A2FV-01 8 144696849 144696849 G - TSTA3 Frame_Shift_Del p.H137Tfs*13 0.10 TCGA-EW-A2FV-01 8 144772259 144772259 G - ZNF707 5'UTR 0.08 TCGA-EW-A2FV-01 8 144897446 144897446 G - SCRIB Frame_Shift_Del p.R33Afs*27 0.09 TCGA-EW-A2FV-01 8 144943296 144943296 G - EPPK1 Frame_Shift_Del p.Q1376Rfs*18 0.09 TCGA-EW-A2FV-01 8 145086680 145086680 G - SPATC1 5'UTR 0.14 TCGA-EW-A2FV-01 8 145537517 145537517 C - HSF1 Frame_Shift_Del p.S421Rfs*2 0.09 TCGA-EW-A2FV-01 8 145618747 145618747 C - CPSF1 Frame_Shift_Del p.E1402Sfs*9 0.11 TCGA-EW-A2FV-01 8 145619147 145619147 C - CPSF1 Frame_Shift_Del p.L1323Sfs*38 0.09 TCGA-EW-A2FV-01 8 145697580 145697580 G - KIFC2 Frame_Shift_Del p.A517Pfs*7 0.08 TCGA-EW-A2FV-01 8 145724188 145724188 T - PPP1R16A Frame_Shift_Del p.L99Wfs*7 0.08 TCGA-EW-A2FV-01 8 145730691 145730691 C - GPT Frame_Shift_Del p.Q188Sfs*71 0.12 TCGA-EW-A2FV-01 8 145741244 145741244 C - RECQL4 Frame_Shift_Del p.E388Sfs*18 0.09 TCGA-EW-A2FV-01 8 1513875 1513875 C - DLGAP2 Frame_Shift_Del p.T341Pfs*13 0.16 TCGA-EW-A2FV-01 8 15978055 15978055 A - MSR1 Frame_Shift_Del p.I365Nfs*50 0.08 TCGA-EW-A2FV-01 8 17406234 17406234 T - SLC7A2 Frame_Shift_Del p.F234Sfs*12 0.10 TCGA-EW-A2FV-01 8 17504559 17504559 T - MTUS1 Frame_Shift_Del p.K1177Nfs*2 0.08 TCGA-EW-A2FV-01 8 17532734 17532734 T - MTUS1 Frame_Shift_Del p.T956Pfs*13 0.09 TCGA-EW-A2FV-01 8 1808275 1808275 C - ARHGEF10 Frame_Shift_Del p.S137Pfs*38 0.10 TCGA-EW-A2FV-01 8 19277877 19277877 T - CSGALNACT1 Frame_Shift_Del p.N369Ifs*5 0.10 TCGA-EW-A2FV-01 8 19822821 19822821 A - LPL Frame_Shift_Del 0.09 TCGA-EW-A2FV-01 8 2040348 2040348 G - MYOM2 Frame_Shift_Del 0.08 TCGA-EW-A2FV-01 8 21960389 21960389 C - FAM160B2 Frame_Shift_Del p.P728Hfs*99 0.09 TCGA-EW-A2FV-01 8 22020106 22020106 G - SFTPC Frame_Shift_Del p.G22Afs*12 0.10 TCGA-EW-A2FV-01 8 22020971 22020971 C - SFTPC Frame_Shift_Del p.P117Lfs*8 0.11 TCGA-EW-A2FV-01 8 22167512 22167512 A - PIWIL2 Frame_Shift_Del p.N577Ifs*10 0.08 TCGA-EW-A2FV-01 8 22171876 22171876 C - PIWIL2 Frame_Shift_Del p.P676Hfs*61 0.11 TCGA-EW-A2FV-01 8 22333054 22333054 T - PPP3CC Frame_Shift_Del p.L97Yfs*27 0.08 TCGA-EW-A2FV-01 8 23058074 23058074 A - TNFRSF10A Frame_Shift_Del p.L248Wfs*11 0.10 TCGA-EW-A2FV-01 8 25220623 25220623 A - DOCK5 Frame_Shift_Del p.D1005Ifs*4 0.08 TCGA-EW-A2FV-01 8 27151629 27151629 C - TRIM35 Frame_Shift_Del p.E244Rfs*2 0.09 TCGA-EW-A2FV-01 8 27303377 27303377 A - PTK2B Frame_Shift_Del p.N761Tfs*75 0.08 TCGA-EW-A2FV-01 8 27315887 27315887 C - PTK2B Frame_Shift_Del p.V965* 0.09 TCGA-EW-A2FV-01 8 27321135 27321135 G - CHRNA2 Frame_Shift_Del p.C276Afs*61 0.08 TCGA-EW-A2FV-01 8 29043966 29043966 T C KIF13B Missense_Mutation p.M114V 0.18 deleterious(0) probably_damaging(0.999) TCGA-EW-A2FV-01 8 30854123 30854123 T - PURG Frame_Shift_Del p.T319Qfs*7 0.11 TCGA-EW-A2FV-01 8 30921869 30921869 G - WRN Frame_Shift_Del p.K93Nfs*7 0.09 TCGA-EW-A2FV-01 8 3224728 3224728 G - CSMD1 Frame_Shift_Del p.H981Tfs*5 0.09 TCGA-EW-A2FV-01 8 3245015 3245015 C - CSMD1 Splice_Site p.X928_splice 0.09 TCGA-EW-A2FV-01 8 33356754 33356754 T - TTI2 Frame_Shift_Del p.V489Wfs*2 0.10 TCGA-EW-A2FV-01 8 36642055 36642055 T - KCNU1 Frame_Shift_Del p.L43* 0.10 TCGA-EW-A2FV-01 8 37730517 37730517 G - RAB11FIP1 Frame_Shift_Del p.I602* 0.20 TCGA-EW-A2FV-01 8 37791911 37791911 T - GOT1L1 Frame_Shift_Del p.N389Ifs*28 0.08 TCGA-EW-A2FV-01 8 38001893 38001893 G - STAR Frame_Shift_Del p.K253Rfs*68 0.13 TCGA-EW-A2FV-01 8 38187222 38187222 T - WHSC1L1 Frame_Shift_Del p.T419Pfs*8 0.17 TCGA-EW-A2FV-01 8 38285870 38285870 G - FGFR1 Frame_Shift_Del p.V182* 0.09 TCGA-EW-A2FV-01 8 41572554 41572554 C - ANK1 Frame_Shift_Del p.K581Rfs*23 0.15 TCGA-EW-A2FV-01 8 41573220 41573220 T - ANK1 Frame_Shift_Del p.T551Qfs*15 0.10 TCGA-EW-A2FV-01 8 41573330 41573330 C - ANK1 Frame_Shift_Del p.G514Afs*6 0.09 TCGA-EW-A2FV-01 8 42231835 42231835 G - DKK4 Frame_Shift_Del p.P153Lfs*54 0.12 TCGA-EW-A2FV-01 8 42259378 42259378 T - VDAC3 Frame_Shift_Del p.S135Lfs*22 0.10 TCGA-EW-A2FV-01 8 48639793 48639793 T - SPIDR Frame_Shift_Del p.F792Sfs*56 0.09 TCGA-EW-A2FV-01 8 48962499 48962499 A - UBE2V2 Frame_Shift_Del p.I86Lfs*3 0.12 TCGA-EW-A2FV-01 8 49831439 49831439 T - SNAI2 Frame_Shift_Del p.N245Tfs*22 0.10 TCGA-EW-A2FV-01 8 55539295 55539295 T - RP1 Frame_Shift_Del p.S953Qfs*12 0.10 TCGA-EW-A2FV-01 8 59058865 59058865 C - FAM110B Frame_Shift_Del p.L27Cfs*4 0.13 TCGA-EW-A2FV-01 8 59720340 59720340 C - TOX Frame_Shift_Del p.G516Afs*21 0.11 TCGA-EW-A2FV-01 8 61765539 61765539 G - CHD7 Frame_Shift_Del p.D2086Ifs*58 0.08 TCGA-EW-A2FV-01 8 67040587 67040587 G - TRIM55 Frame_Shift_Del p.G74Afs*64 0.11 TCGA-EW-A2FV-01 8 67369333 67369333 C - ADHFE1 Frame_Shift_Del p.P366Qfs*55 0.09 TCGA-EW-A2FV-01 8 67478370 67478370 T - MYBL1 Frame_Shift_Del p.T687Hfs*43 0.08 TCGA-EW-A2FV-01 8 67793183 67793183 A G MCMDC2 Missense_Mutation p.N270S 0.12 tolerated(0.15) benign(0.009) TCGA-EW-A2FV-01 8 68165742 68165742 T - ARFGEF1 Frame_Shift_Del p.K881Rfs*4 0.09 TCGA-EW-A2FV-01 8 69005895 69005895 A - PREX2 Frame_Shift_Del p.K770Nfs*19 0.09 TCGA-EW-A2FV-01 8 69028099 69028099 T - PREX2 Frame_Shift_Del p.F1087Lfs*3 0.10 TCGA-EW-A2FV-01 8 70514026 70514026 T - SULF1 Frame_Shift_Del p.F343Lfs*7 0.09 TCGA-EW-A2FV-01 8 70588858 70588858 A - SLCO5A1 Frame_Shift_Del p.L692Cfs*40 0.08 TCGA-EW-A2FV-01 8 70667693 70667693 T - SLCO5A1 Frame_Shift_Del p.V409Ffs*21 0.08 TCGA-EW-A2FV-01 8 71128941 71128941 C - NCOA2 Frame_Shift_Del p.A14Qfs*33 0.09 TCGA-EW-A2FV-01 8 72755926 72755926 A - RP11-383H13.1 Frame_Shift_Del p.Q97Hfs*27 0.12 TCGA-EW-A2FV-01 8 74791069 74791069 C - UBE2W Frame_Shift_Del p.D26Mfs*38 0.09 TCGA-EW-A2FV-01 8 7718228 7718228 T - SPAG11A Frame_Shift_Del p.F94Sfs*63 0.08 TCGA-EW-A2FV-01 8 77618372 77618372 C - ZFHX4 Frame_Shift_Del p.R685Gfs*40 0.09 TCGA-EW-A2FV-01 8 77775599 77775599 A - ZFHX4 Frame_Shift_Del p.E3219Rfs*15 0.11 TCGA-EW-A2FV-01 8 86357444 86357444 A - CA3 Frame_Shift_Del p.K169Rfs*43 0.09 TCGA-EW-A2FV-01 8 87751931 87751931 T - CNGB3 Frame_Shift_Del p.T55Pfs*28 0.10 TCGA-EW-A2FV-01 8 89128904 89128904 T - MMP16 Frame_Shift_Del p.V306Cfs*45 0.16 TCGA-EW-A2FV-01 8 92090642 92090642 A - OTUD6B Frame_Shift_Del p.N156Tfs*2 0.11 TCGA-EW-A2FV-01 9 100328207 100328207 G - TMOD1 Frame_Shift_Del p.T234Hfs*21 0.09 TCGA-EW-A2FV-01 9 100431930 100431930 G - NCBP1 Frame_Shift_Del p.S734Mfs*3 0.10 TCGA-EW-A2FV-01 9 100843318 100843318 C - NANS Frame_Shift_Del p.P276Qfs*24 0.08 TCGA-EW-A2FV-01 9 100971007 100971007 A - TBC1D2 Frame_Shift_Del p.V698Gfs*18 0.11 TCGA-EW-A2FV-01 9 100975460 100975460 T - TBC1D2 Frame_Shift_Del p.N472Tfs*22 0.12 TCGA-EW-A2FV-01 9 101125029 101125029 G - GABBR2 Frame_Shift_Del p.L621Cfs*33 0.12 TCGA-EW-A2FV-01 9 101530436 101530436 A - ANKS6 Frame_Shift_Del p.V690Gfs*89 0.09 TCGA-EW-A2FV-01 9 103204225 103204225 A - MSANTD3 Frame_Shift_Del p.N3Tfs*5 0.10 TCGA-EW-A2FV-01 9 104125276 104125276 C - BAAT Frame_Shift_Del p.V231* 0.13 TCGA-EW-A2FV-01 9 106901538 106901538 T - SMC2 Frame_Shift_Del p.S1180Qfs*39 0.09 TCGA-EW-A2FV-01 9 107550292 107550292 C - ABCA1 Frame_Shift_Del p.G2038Efs*22 0.09 TCGA-EW-A2FV-01 9 107607827 107607827 G - ABCA1 Frame_Shift_Del p.F249Sfs*27 0.10 TCGA-EW-A2FV-01 9 107651403 107651403 G - ABCA1 Frame_Shift_Del p.P47Hfs*76 0.14 TCGA-EW-A2FV-01 9 109690247 109690247 G - ZNF462 Frame_Shift_Del p.P1353Qfs*44 0.14 TCGA-EW-A2FV-01 9 111979242 111979242 C - EPB41L4B Frame_Shift_Del p.P532Lfs*2 0.10 TCGA-EW-A2FV-01 9 112013782 112013782 G - EPB41L4B Frame_Shift_Del p.P430Qfs*2 0.11 TCGA-EW-A2FV-01 9 112189344 112189344 T - PTPN3 Frame_Shift_Del p.N296Tfs*41 0.09 TCGA-EW-A2FV-01 9 113245930 113245930 G - SVEP1 Frame_Shift_Del p.V659Sfs*43 0.08 TCGA-EW-A2FV-01 9 113704407 113704407 G - LPAR1 Frame_Shift_Del p.I30Lfs*23 0.11 TCGA-EW-A2FV-01 9 114124267 114124267 C - KIAA0368 3'UTR 0.08 TCGA-EW-A2FV-01 9 114213706 114213706 T - KIAA0368 Frame_Shift_Del p.K229Rfs*2 0.09 TCGA-EW-A2FV-01 9 114454353 114454353 T - C9orf84 Frame_Shift_Del p.M1238* 0.11 TCGA-EW-A2FV-01 9 114694545 114694545 C - UGCG Frame_Shift_Del p.H308Tfs*52 0.08 TCGA-EW-A2FV-01 9 114695162 114695162 A - UGCG Frame_Shift_Del p.E357Dfs*3 0.08 TCGA-EW-A2FV-01 9 115948534 115948534 A - FKBP15 Frame_Shift_Del p.F498Sfs*12 0.09 TCGA-EW-A2FV-01 9 116049023 116049023 A - PRPF4 Frame_Shift_Del p.K284Nfs*22 0.09 TCGA-EW-A2FV-01 9 117122237 117122237 G - AKNA Frame_Shift_Del p.L744Wfs*25 0.10 TCGA-EW-A2FV-01 9 119976865 119976865 G - ASTN2 Frame_Shift_Del p.Q263Rfs*56 0.11 TCGA-EW-A2FV-01 9 122011358 122011358 G - BRINP1 Frame_Shift_Del p.L97Sfs*45 0.09 TCGA-EW-A2FV-01 9 123778534 123778534 T - C5 Frame_Shift_Del p.N665Mfs*19 0.12 TCGA-EW-A2FV-01 9 123935556 123935556 G - CNTRL Frame_Shift_Del p.E2152Kfs*6 0.09 TCGA-EW-A2FV-01 9 124440969 124440969 A - DAB2IP Frame_Shift_Del p.R19Gfs*78 0.15 TCGA-EW-A2FV-01 9 125273846 125273846 T - OR1J2 Frame_Shift_Del p.F256Lfs*9 0.09 TCGA-EW-A2FV-01 9 125562725 125562725 G - OR1K1 Frame_Shift_Del p.V110* 0.09 TCGA-EW-A2FV-01 9 125681801 125681801 C - ZBTB26 Frame_Shift_Del p.G138Dfs*48 0.08 TCGA-EW-A2FV-01 9 126133634 126133634 T - CRB2 Frame_Shift_Del p.L738Rfs*403 0.08 TCGA-EW-A2FV-01 9 12709051 12709051 G - TYRP1 Frame_Shift_Del p.T496Lfs*5 0.08 TCGA-EW-A2FV-01 9 127262935 127262935 C - NR5A1 Frame_Shift_Del p.D102Tfs*4 0.16 TCGA-EW-A2FV-01 9 127651761 127651761 T - GOLGA1 Frame_Shift_Del p.T518Pfs*35 0.09 TCGA-EW-A2FV-01 9 12775941 12775941 C - LURAP1L Frame_Shift_Del p.P77Qfs*17 0.16 TCGA-EW-A2FV-01 9 128283989 128283989 T - MAPKAP1 Intron 0.11 TCGA-EW-A2FV-01 9 130027219 130027219 T - GARNL3 Frame_Shift_Del p.C23Vfs*9 0.09 TCGA-EW-A2FV-01 9 130127584 130127584 T - GARNL3 Frame_Shift_Del p.F701Lfs*77 0.09 TCGA-EW-A2FV-01 9 130164880 130164880 C - SLC2A8 Frame_Shift_Del p.S193Pfs*18 0.16 TCGA-EW-A2FV-01 9 130211910 130211910 G - RPL12 Frame_Shift_Del p.I64Ffs*17 0.09 TCGA-EW-A2FV-01 9 130230035 130230035 C - LRSAM1 Frame_Shift_Del p.S183Rfs*65 0.10 TCGA-EW-A2FV-01 9 130550964 130550964 C - CDK9 Frame_Shift_Del p.P250Lfs*26 0.09 TCGA-EW-A2FV-01 9 130884666 130884666 C - PTGES2 Frame_Shift_Del p.G327Afs*17 0.12 TCGA-EW-A2FV-01 9 130886012 130886012 G - PTGES2 Frame_Shift_Del p.Q219Sfs*14 0.08 TCGA-EW-A2FV-01 9 130932325 130932325 G - CIZ1 Frame_Shift_Del p.Q669Nfs*36 0.08 TCGA-EW-A2FV-01 9 130941162 130941162 T - CIZ1 Frame_Shift_Del p.S442Afs*54 0.09 TCGA-EW-A2FV-01 9 130941239 130941239 G - CIZ1 Frame_Shift_Del p.P416Qfs*80 0.09 TCGA-EW-A2FV-01 9 131019898 131019898 T - GOLGA2 Frame_Shift_Del p.D874Tfs*5 0.10 TCGA-EW-A2FV-01 9 131019930 131019930 C - GOLGA2 Frame_Shift_Del p.E863Rfs*16 0.09 TCGA-EW-A2FV-01 9 13110640 13110640 T - MPDZ Frame_Shift_Del p.M1913Cfs*9 0.10 TCGA-EW-A2FV-01 9 13110660 13110660 T - MPDZ Frame_Shift_Del p.N1906Mfs*16 0.08 TCGA-EW-A2FV-01 9 131222859 131222859 C - ODF2 Intron 0.09 TCGA-EW-A2FV-01 9 13125277 13125277 T - MPDZ Frame_Shift_Del p.K1582Rfs*7 0.11 TCGA-EW-A2FV-01 9 13125364 13125364 T - MPDZ Frame_Shift_Del p.K1553Rfs*2 0.09 TCGA-EW-A2FV-01 9 131345038 131345038 T - SPTAN1 Frame_Shift_Del p.F573Sfs*21 0.11 TCGA-EW-A2FV-01 9 131374112 131374112 G - SPTAN1 Frame_Shift_Del p.D1632Mfs*10 0.13 TCGA-EW-A2FV-01 9 131397974 131397974 C - WDR34 Frame_Shift_Del p.G259Afs*2 0.09 TCGA-EW-A2FV-01 9 13150544 13150544 T - MPDZ Frame_Shift_Del p.N1199Mfs*4 0.09 TCGA-EW-A2FV-01 9 131583076 131583076 C - ENDOG Frame_Shift_Del p.R188Afs*26 0.09 TCGA-EW-A2FV-01 9 131757756 131757756 C - NUP188 Frame_Shift_Del p.A1106Pfs*15 0.08 TCGA-EW-A2FV-01 9 132631244 132631244 C - USP20 Frame_Shift_Del p.V415* 0.17 TCGA-EW-A2FV-01 9 132671226 132671226 T - FNBP1 Frame_Shift_Del p.K413Sfs*9 0.11 TCGA-EW-A2FV-01 9 133339541 133339541 C - ASS1 Frame_Shift_Del p.Q138Rfs*2 0.17 TCGA-EW-A2FV-01 9 133542056 133542056 C - PRDM12 Frame_Shift_Del p.P96Lfs*26 0.12 TCGA-EW-A2FV-01 9 133936438 133936438 C - LAMC3 Frame_Shift_Del p.H726Tfs*158 0.08 TCGA-EW-A2FV-01 9 133942450 133942450 C - LAMC3 Frame_Shift_Del p.N819Mfs*65 0.18 TCGA-EW-A2FV-01 9 134360464 134360464 T - PRRC2B Frame_Shift_Del p.F1899Sfs*14 0.08 TCGA-EW-A2FV-01 9 134381534 134381534 T - POMT1 Frame_Shift_Del p.Y54Tfs*2 0.09 TCGA-EW-A2FV-01 9 134404964 134404964 A - UCK1 Frame_Shift_Del p.F97Lfs*5 0.10 TCGA-EW-A2FV-01 9 134814802 134814802 A - MED27 Frame_Shift_Del p.L180Yfs*13 0.08 TCGA-EW-A2FV-01 9 135470318 135470318 T - DDX31 Frame_Shift_Del p.T831Hfs*2 0.08 TCGA-EW-A2FV-01 9 135505688 135505688 C - DDX31 Frame_Shift_Del p.A637Qfs*26 0.09 TCGA-EW-A2FV-01 9 135929265 135929265 A - GTF3C5 Frame_Shift_Del p.N310Tfs*18 0.09 TCGA-EW-A2FV-01 9 135942495 135942495 C - CEL Frame_Shift_Del p.P270Lfs*12 0.09 TCGA-EW-A2FV-01 9 135945882 135945882 C - CEL Frame_Shift_Del p.S445Lfs*43 0.10 TCGA-EW-A2FV-01 9 136227200 136227200 T - SURF2 Frame_Shift_Del p.L194* 0.09 TCGA-EW-A2FV-01 9 136596478 136596478 G - SARDH Frame_Shift_Del p.A214Lfs*24 0.13 TCGA-EW-A2FV-01 9 136649459 136649459 T - VAV2 Frame_Shift_Del p.A539Pfs*30 0.09 TCGA-EW-A2FV-01 9 136653500 136653500 G - VAV2 Frame_Shift_Del p.M462* 0.08 TCGA-EW-A2FV-01 9 136804264 136804264 A - VAV2 Frame_Shift_Del p.F94Lfs*91 0.09 TCGA-EW-A2FV-01 9 137650133 137650133 G - COL5A1 Frame_Shift_Del p.G643Afs*161 0.08 TCGA-EW-A2FV-01 9 138379782 138379782 C - PPP1R26 Frame_Shift_Del p.W1144Gfs*10 0.09 TCGA-EW-A2FV-01 9 138456136 138456136 T - PAEP Frame_Shift_Del p.F120Sfs*16 0.12 TCGA-EW-A2FV-01 9 138657029 138657029 C - KCNT1 Frame_Shift_Del p.R398Gfs*81 0.08 TCGA-EW-A2FV-01 9 139265055 139265055 G - CARD9 Frame_Shift_Del p.S243Afs*119 0.13 TCGA-EW-A2FV-01 9 139345733 139345733 T - SEC16A Frame_Shift_Del p.K2096Rfs*46 0.08 TCGA-EW-A2FV-01 9 139395088 139395088 G - NOTCH1 Frame_Shift_Del p.S1951Afs*30 0.11 TCGA-EW-A2FV-01 9 139571495 139571495 C - AGPAT2 Frame_Shift_Del p.G137Afs*14 0.13 TCGA-EW-A2FV-01 9 139635782 139635782 G - LCN10 Frame_Shift_Del p.L97* 0.13 TCGA-EW-A2FV-01 9 139747996 139747996 G - MAMDC4 Splice_Site p.X110_splice 0.08 TCGA-EW-A2FV-01 9 139751183 139751183 G - MAMDC4 Frame_Shift_Del p.D582Tfs*81 0.10 TCGA-EW-A2FV-01 9 140000627 140000627 G - MAN1B1 Frame_Shift_Del p.D436Mfs*35 0.09 TCGA-EW-A2FV-01 9 140036489 140036489 C - GRIN1 Frame_Shift_Del p.P95Hfs*27 0.09 TCGA-EW-A2FV-01 9 140357199 140357199 C - PNPLA7 Frame_Shift_Del p.D1144Mfs*23 0.10 TCGA-EW-A2FV-01 9 140441314 140441314 C - PNPLA7 Frame_Shift_Del p.V81* 0.08 TCGA-EW-A2FV-01 9 140468672 140468672 T - DPH7 Frame_Shift_Del p.I210Lfs*11 0.11 TCGA-EW-A2FV-01 9 140477025 140477025 G - ZMYND19 Frame_Shift_Del p.F219Sfs*51 0.11 TCGA-EW-A2FV-01 9 140605461 140605461 A - EHMT1 Frame_Shift_Del p.T23Pfs*66 0.17 TCGA-EW-A2FV-01 9 140865918 140865918 T - CACNA1B Frame_Shift_Del p.F474Lfs*6 0.08 TCGA-EW-A2FV-01 9 14740153 14740153 A - FREM1 Frame_Shift_Del p.W2112Gfs*2 0.08 TCGA-EW-A2FV-01 9 15474206 15474206 T - PSIP1 Frame_Shift_Del p.K220Rfs*45 0.08 TCGA-EW-A2FV-01 9 15486880 15486880 T - PSIP1 Frame_Shift_Del p.K113Rfs*21 0.10 TCGA-EW-A2FV-01 9 17786416 17786416 A - SH3GL2 Frame_Shift_Del p.I77Sfs*57 0.10 TCGA-EW-A2FV-01 9 18826333 18826333 C - ADAMTSL1 Frame_Shift_Del p.P1330Rfs*33 0.13 TCGA-EW-A2FV-01 9 18905873 18905873 T - ADAMTSL1 Frame_Shift_Del p.C1649Afs*8 0.08 TCGA-EW-A2FV-01 9 19376283 19376283 A - RPS6 3'UTR 0.16 TCGA-EW-A2FV-01 9 20620780 20620780 T - MLLT3 Frame_Shift_Del p.K22Nfs*52 0.11 TCGA-EW-A2FV-01 9 20993295 20993295 C - FOCAD Frame_Shift_Del p.L1768Sfs*9 0.08 TCGA-EW-A2FV-01 9 2104152 2104152 T - SMARCA2 Frame_Shift_Del p.Y1093Tfs*17 0.11 TCGA-EW-A2FV-01 9 21207081 21207081 A - IFNA10 Frame_Shift_Del p.S6Lfs*17 0.13 TCGA-EW-A2FV-01 9 21239345 21239345 T - IFNA14 3'UTR 0.09 TCGA-EW-A2FV-01 9 21350439 21350439 T - IFNA6 Frame_Shift_Del p.I150Sfs*5 0.09 TCGA-EW-A2FV-01 9 2641482 2641482 A - VLDLR Frame_Shift_Del p.D145Mfs*8 0.08 TCGA-EW-A2FV-01 9 26842362 26842362 A - CAAP1 Frame_Shift_Del p.E342Rfs*2 0.08 TCGA-EW-A2FV-01 9 27185606 27185606 C - TEK Frame_Shift_Del p.F437Sfs*12 0.12 TCGA-EW-A2FV-01 9 32481392 32481392 T - DDX58 Frame_Shift_Del p.D529Mfs*32 0.08 TCGA-EW-A2FV-01 9 32541961 32541961 T - TOPORS Frame_Shift_Del p.K854Nfs*12 0.08 TCGA-EW-A2FV-01 9 33057597 33057597 T - SMU1 Frame_Shift_Del p.K289Rfs*11 0.11 TCGA-EW-A2FV-01 9 34241537 34241537 A C UBAP1 Missense_Mutation p.K236Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-EW-A2FV-01 9 34990693 34990693 T - DNAJB5 Frame_Shift_Del p.F65Sfs*13 0.11 TCGA-EW-A2FV-01 9 34993345 34993345 C - DNAJB5 Frame_Shift_Del p.N154Tfs*16 0.09 TCGA-EW-A2FV-01 9 35381161 35381161 G - UNC13B Frame_Shift_Del p.E733Rfs*4 0.11 TCGA-EW-A2FV-01 9 35548387 35548387 G - RUSC2 Frame_Shift_Del p.G624Dfs*23 0.15 TCGA-EW-A2FV-01 9 35650861 35650861 T - SIT1 5'UTR 0.09 TCGA-EW-A2FV-01 9 35660488 35660488 G - CCDC107 Intron 0.12 TCGA-EW-A2FV-01 9 35703862 35703862 T - TLN1 Frame_Shift_Del p.A2090Pfs*25 0.09 TCGA-EW-A2FV-01 9 35719145 35719145 G - TLN1 Frame_Shift_Del p.L608Cfs*61 0.11 TCGA-EW-A2FV-01 9 35739086 35739086 C - GBA2 Frame_Shift_Del p.D570Tfs*2 0.09 TCGA-EW-A2FV-01 9 35846864 35846864 T - TMEM8B Frame_Shift_Del p.F231Sfs*11 0.09 TCGA-EW-A2FV-01 9 36630301 36630301 A - MELK Frame_Shift_Del p.K225Nfs*30 0.09 TCGA-EW-A2FV-01 9 37006519 37006519 T - PAX5 Frame_Shift_Del p.V143Yfs*16 0.09 TCGA-EW-A2FV-01 9 37436666 37436666 C - GRHPR Frame_Shift_Del p.H293Tfs*25 0.09 TCGA-EW-A2FV-01 9 38396442 38396442 G - ALDH1B1 Frame_Shift_Del p.V234Wfs*2 0.12 TCGA-EW-A2FV-01 9 38396919 38396919 G - ALDH1B1 Frame_Shift_Del p.E393Sfs*18 0.10 TCGA-EW-A2FV-01 9 38397012 38397012 C - ALDH1B1 Frame_Shift_Del p.L424Cfs*47 0.10 TCGA-EW-A2FV-01 9 38596378 38596378 T - ANKRD18A Frame_Shift_Del p.K320Rfs*11 0.11 TCGA-EW-A2FV-01 9 6013265 6013265 A - RANBP6 Frame_Shift_Del p.F781Lfs*25 0.08 TCGA-EW-A2FV-01 9 71845028 71845028 G - TJP2 Frame_Shift_Del p.G549Efs*39 0.08 TCGA-EW-A2FV-01 9 73151372 73151372 T - TRPM3 Frame_Shift_Del p.T1541Qfs*39 0.10 TCGA-EW-A2FV-01 9 77359041 77359041 T - TRPM6 Frame_Shift_Del p.S1702Afs*17 0.08 TCGA-EW-A2FV-01 9 77457140 77457140 G - TRPM6 Frame_Shift_Del p.P91Qfs*36 0.08 TCGA-EW-A2FV-01 9 79635477 79635477 C - FOXB2 Frame_Shift_Del p.G304Afs*34 0.19 TCGA-EW-A2FV-01 9 80923410 80923410 G - PSAT1 Frame_Shift_Del p.F219Lfs*83 0.11 TCGA-EW-A2FV-01 9 84202684 84202684 T - TLE1 Frame_Shift_Del p.K630Sfs*57 0.08 TCGA-EW-A2FV-01 9 84205745 84205745 C - TLE1 Frame_Shift_Del p.D602Ifs*7 0.08 TCGA-EW-A2FV-01 9 84530332 84530332 C - SPATA31D5P RNA 0.08 TCGA-EW-A2FV-01 9 84603811 84603811 C - SPATA31D1 Frame_Shift_Del p.N28Tfs*5 0.09 TCGA-EW-A2FV-01 9 84606098 84606098 C - SPATA31D1 Frame_Shift_Del p.P239Hfs*30 0.09 TCGA-EW-A2FV-01 9 8504314 8504314 G - PTPRD Frame_Shift_Del p.P590Lfs*39 0.10 TCGA-EW-A2FV-01 9 8518306 8518306 T - PTPRD Frame_Shift_Del p.N362Tfs*22 0.09 TCGA-EW-A2FV-01 9 86616512 86616512 A - RMI1 Frame_Shift_Del p.V206Yfs*5 0.09 TCGA-EW-A2FV-01 9 88261313 88261313 T - AGTPBP1 Frame_Shift_Del p.S330Vfs*9 0.08 TCGA-EW-A2FV-01 9 88284426 88284426 A - AGTPBP1 Frame_Shift_Del p.F212Lfs*9 0.07 TCGA-EW-A2FV-01 9 88307628 88307628 T - AGTPBP1 Frame_Shift_Del p.I45Ffs*15 0.10 TCGA-EW-A2FV-01 9 88916452 88916452 T - ZCCHC6 Frame_Shift_Del p.R1387Efs*51 0.11 TCGA-EW-A2FV-01 9 88937353 88937353 C - ZCCHC6 Frame_Shift_Del p.G972Vfs*3 0.08 TCGA-EW-A2FV-01 9 90342546 90342546 T - CTSL Frame_Shift_Del p.C11Afs*9 0.08 TCGA-EW-A2FV-01 9 90503380 90503380 C - SPATA31E1 Frame_Shift_Del p.L1327Wfs*46 0.18 TCGA-EW-A2FV-01 9 91083344 91083344 A - SPIN1 Frame_Shift_Del p.E138Dfs*19 0.12 TCGA-EW-A2FV-01 9 91940830 91940830 A - SECISBP2 Frame_Shift_Del p.T153Rfs*20 0.09 TCGA-EW-A2FV-01 9 93626932 93626932 A - SYK Frame_Shift_Del p.I262Sfs*28 0.08 TCGA-EW-A2FV-01 9 93979583 93979583 T - AUH Frame_Shift_Del p.K290Nfs*2 0.10 TCGA-EW-A2FV-01 9 94991399 94991399 A - IARS Frame_Shift_Del p.L1098Cfs*15 0.09 TCGA-EW-A2FV-01 9 95027255 95027255 A - IARS Frame_Shift_Del p.P553Lfs*35 0.09 TCGA-EW-A2FV-01 9 95280017 95280017 G - ECM2 Frame_Shift_Del p.Q145Kfs*25 0.09 TCGA-EW-A2FV-01 9 95397479 95397479 T - IPPK Frame_Shift_Del p.N343Tfs*19 0.08 TCGA-EW-A2FV-01 9 95480870 95480870 T - BICD2 Frame_Shift_Del p.K686Sfs*26 0.09 TCGA-EW-A2FV-01 9 95782652 95782652 T - FGD3 Frame_Shift_Del p.F481Lfs*29 0.08 TCGA-EW-A2FV-01 9 96438994 96438994 C - PHF2 Frame_Shift_Del p.S985Lfs*102 0.09 TCGA-EW-A2FV-01 9 97080860 97080860 C - NUTM2F Frame_Shift_Del p.V720Sfs*76 0.09 TCGA-EW-A2FV-01 9 97084595 97084595 G - NUTM2F Frame_Shift_Del p.L244Wfs*8 0.11 TCGA-EW-A2FV-01 9 97321291 97321291 G - FBP2 Frame_Shift_Del p.L317Sfs*40 0.09 TCGA-EW-A2FV-01 9 97369188 97369188 T - FBP1 Frame_Shift_Del p.K205Rfs*72 0.10 TCGA-EW-A2FV-01 9 98239875 98239875 C - PTCH1 Frame_Shift_Del p.G486Afs*5 0.10 TCGA-EW-A2FV-01 9 98278901 98278901 T - RP11-435O5.4 3'Flank 0.08 TCGA-EW-A2FV-01 9 99099002 99099002 A - SLC35D2 Frame_Shift_Del p.L250Wfs*5 0.11 TCGA-EW-A2FV-01 9 99581918 99581918 A - ZNF782 Frame_Shift_Del p.R130Vfs*4 0.09 TCGA-EW-A2FV-01 9 99721161 99721161 A - HIATL2 Frame_Shift_Del p.S75Lfs*7 0.08 TCGA-EW-A2FV-01 X 100103680 100103680 T - NOX1 Frame_Shift_Del p.T503Pfs*15 0.09 TCGA-EW-A2FV-01 X 100333999 100333999 C - TMEM35 Frame_Shift_Del p.R5Efs*3 0.11 TCGA-EW-A2FV-01 X 100364884 100364884 T - CENPI Frame_Shift_Del p.Y165Ifs*55 0.09 TCGA-EW-A2FV-01 X 100530225 100530225 T - TAF7L Frame_Shift_Del p.K443Nfs*18 0.08 TCGA-EW-A2FV-01 X 100531319 100531319 C - TAF7L Frame_Shift_Del p.A383Qfs*8 0.11 TCGA-EW-A2FV-01 X 100612561 100612561 G - BTK Frame_Shift_Del p.R372Gfs*31 0.08 TCGA-EW-A2FV-01 X 100911724 100911724 T - ARMCX2 Frame_Shift_Del p.K284Rfs*3 0.09 TCGA-EW-A2FV-01 X 101138598 101138598 T - ZMAT1 Frame_Shift_Del p.S601Afs*48 0.10 TCGA-EW-A2FV-01 X 10153185 10153185 A - CLCN4 Frame_Shift_Del p.K39Sfs*35 0.09 TCGA-EW-A2FV-01 X 10166039 10166039 T - CLCN4 Frame_Shift_Del p.L166Wfs*21 0.09 TCGA-EW-A2FV-01 X 101818656 101818656 C - NXF4 RNA 0.09 TCGA-EW-A2FV-01 X 102864464 102864464 A - TCEAL3 Frame_Shift_Del p.M159Wfs*26 0.09 TCGA-EW-A2FV-01 X 103294735 103294735 C - H2BFM Frame_Shift_Del p.R66Gfs*3 0.15 TCGA-EW-A2FV-01 X 103349437 103349437 C - SLC25A53 Frame_Shift_Del p.R169Gfs*59 0.09 TCGA-EW-A2FV-01 X 106092537 106092537 A - TBC1D8B Intron 0.07 TCGA-EW-A2FV-01 X 106224205 106224205 A - MORC4 Frame_Shift_Del p.L285Cfs*6 0.09 TCGA-EW-A2FV-01 X 106359947 106359947 T - RBM41 Frame_Shift_Del p.T20Qfs*7 0.08 TCGA-EW-A2FV-01 X 106885599 106885599 T - PRPS1 Frame_Shift_Del p.F138Lfs*5 0.12 TCGA-EW-A2FV-01 X 108635309 108635309 T - GUCY2F Frame_Shift_Del p.K871Rfs*29 0.09 TCGA-EW-A2FV-01 X 109697412 109697412 G - RGAG1 Frame_Shift_Del p.V1190Yfs*18 0.09 TCGA-EW-A2FV-01 X 110574179 110574179 G - DCX Frame_Shift_Del p.P381Lfs*105 0.08 TCGA-EW-A2FV-01 X 110654166 110654166 T - DCX Frame_Shift_Del p.M13Cfs*11 0.08 TCGA-EW-A2FV-01 X 110951425 110951425 T - ALG13 Frame_Shift_Del p.S188Lfs*30 0.08 TCGA-EW-A2FV-01 X 11316938 11316938 C - AMELX Frame_Shift_Del p.M154Cfs*35 0.09 TCGA-EW-A2FV-01 X 114468559 114468559 A - LRCH2 Frame_Shift_Del p.C16Vfs*62 0.08 TCGA-EW-A2FV-01 X 117033057 117033057 C - KLHL13 Frame_Shift_Del p.Y598Ifs*9 0.08 TCGA-EW-A2FV-01 X 117543459 117543459 T - WDR44 Frame_Shift_Del p.W515Gfs*3 0.09 TCGA-EW-A2FV-01 X 11781996 11781996 A - MSL3 Frame_Shift_Del p.K284Rfs*2 0.11 TCGA-EW-A2FV-01 X 11790307 11790307 C - MSL3 Frame_Shift_Del p.P440Qfs*22 0.11 TCGA-EW-A2FV-01 X 118223373 118223373 G - KIAA1210 Frame_Shift_Del p.P607Lfs*18 0.08 TCGA-EW-A2FV-01 X 118281490 118281490 C - KIAA1210 Frame_Shift_Del p.G119Afs*27 0.08 TCGA-EW-A2FV-01 X 118774676 118774676 A - SEPT6 Frame_Shift_Del p.Y256Ifs*17 0.09 TCGA-EW-A2FV-01 X 119010572 119010572 T - NDUFA1 3'UTR 0.08 TCGA-EW-A2FV-01 X 119445176 119445176 C - TMEM255A 5'UTR 0.08 TCGA-EW-A2FV-01 X 120007795 120007795 T - CT47B1 Frame_Shift_Del p.E286Rfs*8 0.08 TCGA-EW-A2FV-01 X 122755216 122755216 T - THOC2 Frame_Shift_Del p.A1337Lfs*33 0.09 TCGA-EW-A2FV-01 X 122757058 122757058 T - THOC2 Frame_Shift_Del p.R1194Gfs*20 0.09 TCGA-EW-A2FV-01 X 123164926 123164926 A - STAG2 Frame_Shift_Del p.N81Tfs*2 0.08 TCGA-EW-A2FV-01 X 123480530 123480530 G - SH2D1A Frame_Shift_Del p.E14Kfs*18 0.09 TCGA-EW-A2FV-01 X 123514416 123514416 A - TENM1 Frame_Shift_Del p.F2723Lfs*2 0.09 TCGA-EW-A2FV-01 X 123615682 123615682 A - TENM1 Frame_Shift_Del p.F1283Lfs*30 0.09 TCGA-EW-A2FV-01 X 123630993 123630993 G - TENM1 Frame_Shift_Del p.H1190Tfs*11 0.10 TCGA-EW-A2FV-01 X 125686128 125686128 A - DCAF12L1 Frame_Shift_Del p.I155Tfs*3 0.09 TCGA-EW-A2FV-01 X 128633732 128633732 C - SMARCA1 Frame_Shift_Del p.L419* 0.09 TCGA-EW-A2FV-01 X 128718340 128718340 A - OCRL Frame_Shift_Del p.K713Rfs*29 0.09 TCGA-EW-A2FV-01 X 12903942 12903942 G - TLR7 Frame_Shift_Del p.S107Qfs*23 0.09 TCGA-EW-A2FV-01 X 129349790 129349790 T - ZNF280C Frame_Shift_Del p.M605* 0.08 TCGA-EW-A2FV-01 X 129518702 129518702 G - GPR119 Frame_Shift_Del p.F241Sfs*18 0.09 TCGA-EW-A2FV-01 X 129629374 129629374 T - RP1-274L7.1 Intron 0.08 TCGA-EW-A2FV-01 X 129799659 129799659 T - ENOX2 Frame_Shift_Del p.A354Pfs*24 0.08 TCGA-EW-A2FV-01 X 129803992 129803992 G - ENOX2 Frame_Shift_Del p.P243Qfs*17 0.09 TCGA-EW-A2FV-01 X 129813532 129813532 T - ENOX2 Frame_Shift_Del p.A178Pfs*44 0.10 TCGA-EW-A2FV-01 X 131520783 131520783 G - MBNL3 Frame_Shift_Del p.N277Mfs*18 0.08 TCGA-EW-A2FV-01 X 132352047 132352047 T - TFDP3 Frame_Shift_Del p.T81Lfs*36 0.09 TCGA-EW-A2FV-01 X 133087078 133087078 T - GPC3 Frame_Shift_Del p.E113Rfs*25 0.08 TCGA-EW-A2FV-01 X 133986855 133986855 A - FAM122C Frame_Shift_Del p.R126Dfs*12 0.09 TCGA-EW-A2FV-01 X 134185358 134185358 G - FAM127B 3'UTR 0.09 TCGA-EW-A2FV-01 X 134679389 134679389 A - DDX26B Frame_Shift_Del p.N79Ifs*7 0.09 TCGA-EW-A2FV-01 X 135480156 135480156 T - GPR112 Frame_Shift_Del p.H2769Tfs*12 0.09 TCGA-EW-A2FV-01 X 138678848 138678848 T - MCF2 Frame_Shift_Del p.M789* 0.09 TCGA-EW-A2FV-01 X 138811028 138811028 T - ATP11C 3'UTR 0.09 TCGA-EW-A2FV-01 X 141290731 141290731 A G MAGEC2 Missense_Mutation p.I348T 0.22 tolerated(0.18) benign(0.002) TCGA-EW-A2FV-01 X 147022111 147022111 T - FMR1 Frame_Shift_Del p.F403Lfs*19 0.11 TCGA-EW-A2FV-01 X 147063121 147063121 A - FMR1NB Frame_Shift_Del p.K67Nfs*60 0.15 TCGA-EW-A2FV-01 X 148048417 148048417 C - AFF2 Frame_Shift_Del p.T1005Lfs*38 0.09 TCGA-EW-A2FV-01 X 148048474 148048474 T - AFF2 Frame_Shift_Del p.S1024Pfs*19 0.08 TCGA-EW-A2FV-01 X 1501371 1501371 G - IL3RA 3'UTR 0.08 TCGA-EW-A2FV-01 X 150841003 150841003 C - PASD1 Frame_Shift_Del p.L597Sfs*54 0.08 TCGA-EW-A2FV-01 X 1508473 1508473 G - SLC25A6 Frame_Shift_Del p.L87Sfs*76 0.09 TCGA-EW-A2FV-01 X 152128255 152128255 T - ZNF185 Frame_Shift_Del p.F506Lfs*63 0.09 TCGA-EW-A2FV-01 X 152482365 152482365 C - MAGEA1 Frame_Shift_Del p.E216Rfs*3 0.09 TCGA-EW-A2FV-01 X 15287952 15287952 C - ASB9 Frame_Shift_Del p.P16Qfs*14 0.09 TCGA-EW-A2FV-01 X 152915481 152915481 G - DUSP9 Frame_Shift_Del p.V294Sfs*142 0.11 TCGA-EW-A2FV-01 X 152991404 152991404 C - ABCD1 Frame_Shift_Del p.L229Cfs*107 0.15 TCGA-EW-A2FV-01 X 153043030 153043030 C - PLXNB3 Frame_Shift_Del p.S1739Rfs*2 0.10 TCGA-EW-A2FV-01 X 153178684 153178684 C - ARHGAP4 Frame_Shift_Del p.A507Pfs*115 0.10 TCGA-EW-A2FV-01 X 153420098 153420098 G - OPN1LW Frame_Shift_Del p.G210Afs*11 0.09 TCGA-EW-A2FV-01 X 153594951 153594951 G - FLNA Frame_Shift_Del p.E349Rfs*2 0.09 TCGA-EW-A2FV-01 X 153664204 153664204 G - ATP6AP1 Frame_Shift_Del p.G461Afs*6 0.08 TCGA-EW-A2FV-01 X 153692572 153692572 A - PLXNA3 Frame_Shift_Del p.N582Tfs*45 0.11 TCGA-EW-A2FV-01 X 15371222 15371222 A - FIGF Frame_Shift_Del p.L237Cfs*26 0.10 TCGA-EW-A2FV-01 X 154132671 154132671 G - F8 Frame_Shift_Del p.S1907Afs*38 0.08 TCGA-EW-A2FV-01 X 155234950 155234950 A - IL9R Frame_Shift_Del p.Q196Rfs*9 0.08 TCGA-EW-A2FV-01 X 16168561 16168561 C - GRPR Frame_Shift_Del p.F184Sfs*54 0.09 TCGA-EW-A2FV-01 X 17095494 17095494 T - REPS2 Frame_Shift_Del p.L494Wfs*3 0.09 TCGA-EW-A2FV-01 X 17739567 17739567 C - NHS Frame_Shift_Del p.P288Qfs*10 0.10 TCGA-EW-A2FV-01 X 17818632 17818632 T - RAI2 Frame_Shift_Del p.N500Tfs*4 0.09 TCGA-EW-A2FV-01 X 17819721 17819721 G - RAI2 Frame_Shift_Del p.P137Lfs*35 0.10 TCGA-EW-A2FV-01 X 18192355 18192355 T - BEND2 Frame_Shift_Del p.K592Nfs*32 0.09 TCGA-EW-A2FV-01 X 18276207 18276207 A - SCML2 Frame_Shift_Del p.F410Lfs*4 0.10 TCGA-EW-A2FV-01 X 18283706 18283706 T - SCML2 Frame_Shift_Del p.K316Rfs*7 0.09 TCGA-EW-A2FV-01 X 19371204 19371204 A - PDHA1 Frame_Shift_Del p.G181Efs*37 0.08 TCGA-EW-A2FV-01 X 19389120 19389120 G - MAP3K15 Frame_Shift_Del p.I1120Sfs*29 0.10 TCGA-EW-A2FV-01 X 19410505 19410505 G - MAP3K15 Frame_Shift_Del p.K762Sfs*13 0.08 TCGA-EW-A2FV-01 X 19564066 19564066 T - SH3KBP1 Frame_Shift_Del p.T533Lfs*80 0.09 TCGA-EW-A2FV-01 X 20159799 20159799 G - EIF1AX 5'UTR 0.09 TCGA-EW-A2FV-01 X 205439 205439 C - PLCXD1 Frame_Shift_Del p.I58Ffs*12 0.09 TCGA-EW-A2FV-01 X 205526 205526 C - PLCXD1 Frame_Shift_Del p.V86Sfs*22 0.09 TCGA-EW-A2FV-01 X 2139145 2139145 T - DHRSX Frame_Shift_Del p.K310Nfs*13 0.10 TCGA-EW-A2FV-01 X 215964 215964 G - PLCXD1 Frame_Shift_Del p.D312Tfs*43 0.08 TCGA-EW-A2FV-01 X 22056578 22056578 T - PHEX Intron 0.10 TCGA-EW-A2FV-01 X 230868 230868 C - GTPBP6 Frame_Shift_Del p.D7Tfs*29 0.10 TCGA-EW-A2FV-01 X 23754067 23754067 G - ACOT9 Frame_Shift_Del p.K30Rfs*17 0.08 TCGA-EW-A2FV-01 X 24080682 24080682 T - EIF2S3 Frame_Shift_Del p.F210Lfs*6 0.10 TCGA-EW-A2FV-01 X 24605428 24605428 A - PCYT1B Frame_Shift_Del p.F165Lfs*21 0.08 TCGA-EW-A2FV-01 X 24665300 24665300 T - PCYT1B 5'UTR 0.12 TCGA-EW-A2FV-01 X 24690764 24690764 T - PCYT1B 5'UTR 0.09 TCGA-EW-A2FV-01 X 2641396 2641396 G - CD99 Frame_Shift_Del p.E119Kfs*8 0.09 TCGA-EW-A2FV-01 X 27765172 27765172 G A DCAF8L2 Missense_Mutation p.G54S 0.10 tolerated(0.36) benign(0.049) TCGA-EW-A2FV-01 X 2873532 2873532 G - ARSE Frame_Shift_Del p.Q78Nfs*56 0.08 TCGA-EW-A2FV-01 X 2936600 2936600 T - ARSH Frame_Shift_Del p.S266Pfs*28 0.09 TCGA-EW-A2FV-01 X 30236941 30236941 A - MAGEB2 Frame_Shift_Del p.G84Vfs*28 0.13 TCGA-EW-A2FV-01 X 30268796 30268796 G - MAGEB1 Frame_Shift_Del p.G63Efs*46 0.12 TCGA-EW-A2FV-01 X 30712611 30712611 A - GK Frame_Shift_Del p.K171Nfs*16 0.09 TCGA-EW-A2FV-01 X 31222229 31222229 A - DMD Frame_Shift_Del p.F3219Sfs*64 0.13 TCGA-EW-A2FV-01 X 322181 322181 G - PPP2R3B Frame_Shift_Del p.H157Tfs*66 0.10 TCGA-EW-A2FV-01 X 32404503 32404503 T - DMD Frame_Shift_Del p.K1533Sfs*13 0.11 TCGA-EW-A2FV-01 X 32490347 32490347 T - DMD Frame_Shift_Del p.K961Nfs*43 0.10 TCGA-EW-A2FV-01 X 32717344 32717344 A - DMD Frame_Shift_Del p.L239Cfs*5 0.08 TCGA-EW-A2FV-01 X 36319253 36319253 A - CXorf30 Frame_Shift_Del p.K90Nfs*22 0.09 TCGA-EW-A2FV-01 X 36371708 36371708 T - CXorf30 Frame_Shift_Del p.F369Sfs*9 0.09 TCGA-EW-A2FV-01 X 36371746 36371746 T - CXorf30 Frame_Shift_Del p.L381* 0.09 TCGA-EW-A2FV-01 X 37526644 37526644 G - LANCL3 Frame_Shift_Del p.P337Lfs*7 0.10 TCGA-EW-A2FV-01 X 38546859 38546859 G - TSPAN7 Frame_Shift_Del p.G230Afs*35 0.09 TCGA-EW-A2FV-01 X 40450560 40450560 G - ATP6AP2 Frame_Shift_Del p.G82Efs*2 0.09 TCGA-EW-A2FV-01 X 40573115 40573115 T - MED14 Frame_Shift_Del p.A190Pfs*6 0.09 TCGA-EW-A2FV-01 X 41524608 41524608 A - CASK Frame_Shift_Del p.F210Lfs*28 0.12 TCGA-EW-A2FV-01 X 47041405 47041405 C - RBM10 Frame_Shift_Del p.Q585Rfs*119 0.08 TCGA-EW-A2FV-01 X 47060312 47060312 C - UBA1 Frame_Shift_Del p.L169Wfs*38 0.15 TCGA-EW-A2FV-01 X 47062592 47062592 G - UBA1 Frame_Shift_Del p.G467Afs*23 0.12 TCGA-EW-A2FV-01 X 47086262 47086262 G - CDK16 Frame_Shift_Del p.G438Afs*15 0.09 TCGA-EW-A2FV-01 X 47483785 47483785 C - CFP Frame_Shift_Del p.R434Dfs*? 0.09 TCGA-EW-A2FV-01 X 47486329 47486329 C - CFP Frame_Shift_Del p.P262Lfs*5 0.10 TCGA-EW-A2FV-01 X 47486666 47486666 G - CFP Frame_Shift_Del p.H214Tfs*28 0.11 TCGA-EW-A2FV-01 X 48369767 48369767 G - PORCN Frame_Shift_Del p.V75Sfs*41 0.08 TCGA-EW-A2FV-01 X 48382353 48382353 C - EBP Frame_Shift_Del p.L66Cfs*13 0.10 TCGA-EW-A2FV-01 X 48557400 48557400 T - SUV39H1 Frame_Shift_Del p.F43Lfs*20 0.08 TCGA-EW-A2FV-01 X 48822543 48822543 T - KCND1 Frame_Shift_Del p.N546Tfs*42 0.09 TCGA-EW-A2FV-01 X 48849936 48849936 C - GRIPAP1 Frame_Shift_Del p.A121Lfs*18 0.09 TCGA-EW-A2FV-01 X 49050685 49050685 C - SYP Frame_Shift_Del p.A121Lfs*34 0.08 TCGA-EW-A2FV-01 X 49079411 49079411 G - CACNA1F Frame_Shift_Del p.Q699Rfs*10 0.09 TCGA-EW-A2FV-01 X 49104172 49104172 C - CCDC22 Frame_Shift_Del p.R346Afs*10 0.08 TCGA-EW-A2FV-01 X 50119769 50119769 T - DGKK RNA 0.11 TCGA-EW-A2FV-01 X 50658900 50658900 A - BMP15 Frame_Shift_Del p.N159Tfs*18 0.09 TCGA-EW-A2FV-01 X 52682455 52682455 T - SSX7 Frame_Shift_Del p.K23Sfs*18 0.14 TCGA-EW-A2FV-01 X 52826358 52826358 C - SPANXN5 Frame_Shift_Del p.E11Rfs*24 0.08 TCGA-EW-A2FV-01 X 53457767 53457767 A - RIBC1 Intron 0.09 TCGA-EW-A2FV-01 X 53563490 53563490 G - HUWE1 Frame_Shift_Del p.I4093Sfs*76 0.08 TCGA-EW-A2FV-01 X 53570831 53570831 T - HUWE1 Frame_Shift_Del p.R3784Gfs*68 0.10 TCGA-EW-A2FV-01 X 54143010 54143010 G - FAM120C Frame_Shift_Del p.T761Pfs*27 0.11 TCGA-EW-A2FV-01 X 54282276 54282276 G - WNK3 Frame_Shift_Del p.P716Lfs*44 0.08 TCGA-EW-A2FV-01 X 54581029 54581029 G - GNL3L Frame_Shift_Del p.G451Vfs*17 0.08 TCGA-EW-A2FV-01 X 54780183 54780183 G - ITIH6 Frame_Shift_Del p.H1085Tfs*3 0.09 TCGA-EW-A2FV-01 X 54817453 54817453 A - ITIH6 Frame_Shift_Del p.S145Pfs*19 0.09 TCGA-EW-A2FV-01 X 55287041 55287041 C - PAGE3 Frame_Shift_Del p.G82Vfs*34 0.08 TCGA-EW-A2FV-01 X 63005956 63005956 A - MIR1468 RNA 0.08 TCGA-EW-A2FV-01 X 63411159 63411159 C - AMER1 Frame_Shift_Del p.V670Yfs*49 0.14 TCGA-EW-A2FV-01 X 63412124 63412124 C - AMER1 Frame_Shift_Del p.G348Afs*16 0.12 TCGA-EW-A2FV-01 X 63413153 63413153 T - AMER1 Frame_Shift_Del p.K5Rfs*48 0.10 TCGA-EW-A2FV-01 X 64137693 64137693 G - ZC4H2 Frame_Shift_Del p.K217Sfs*15 0.08 TCGA-EW-A2FV-01 X 64137847 64137847 C - ZC4H2 Intron 0.11 TCGA-EW-A2FV-01 X 64955188 64955188 G - MSN Frame_Shift_Del p.N287Tfs*19 0.10 TCGA-EW-A2FV-01 X 66941758 66941758 C - AR Frame_Shift_Del p.Q803Rfs*6 0.08 TCGA-EW-A2FV-01 X 67430073 67430073 T - OPHN1 Frame_Shift_Del p.R252Gfs*2 0.08 TCGA-EW-A2FV-01 X 67742682 67742682 T - YIPF6 Frame_Shift_Del p.L173Wfs*7 0.10 TCGA-EW-A2FV-01 X 69637787 69637787 A - KIF4A Frame_Shift_Del p.K1103Sfs*46 0.09 TCGA-EW-A2FV-01 X 69649356 69649356 G - GDPD2 Frame_Shift_Del p.A319Pfs*20 0.09 TCGA-EW-A2FV-01 X 69649481 69649481 C - GDPD2 Frame_Shift_Del p.P360Hfs*11 0.09 TCGA-EW-A2FV-01 X 69670039 69670039 G - DLG3 Frame_Shift_Del p.G243Vfs*39 0.12 TCGA-EW-A2FV-01 X 69673624 69673624 G - DLG3 Frame_Shift_Del p.G429Efs*7 0.09 TCGA-EW-A2FV-01 X 70354976 70354976 A - MED12 Frame_Shift_Del p.K1634Rfs*61 0.08 TCGA-EW-A2FV-01 X 70462875 70462875 A - ZMYM3 Frame_Shift_Del p.F1164Lfs*9 0.09 TCGA-EW-A2FV-01 X 70468538 70468538 G - ZMYM3 Frame_Shift_Del p.Q579Sfs*11 0.08 TCGA-EW-A2FV-01 X 70776589 70776589 A - OGT Frame_Shift_Del p.K376Nfs*6 0.10 TCGA-EW-A2FV-01 X 70782825 70782825 T - OGT Frame_Shift_Del p.F704Lfs*12 0.08 TCGA-EW-A2FV-01 X 71358526 71358526 C - NHSL2 Frame_Shift_Del p.S378Vfs*23 0.09 TCGA-EW-A2FV-01 X 71359091 71359091 A - NHSL2 Frame_Shift_Del p.K566Rfs*143 0.08 TCGA-EW-A2FV-01 X 71684469 71684469 T - HDAC8 Frame_Shift_Del p.I284Lfs*35 0.09 TCGA-EW-A2FV-01 X 71829519 71829519 A - PHKA1 Frame_Shift_Del p.L854* 0.08 TCGA-EW-A2FV-01 X 72434104 72434104 T - NAP1L2 Frame_Shift_Del p.G76Vfs*21 0.08 TCGA-EW-A2FV-01 X 72900901 72900901 T - CHIC1 3'UTR 0.08 TCGA-EW-A2FV-01 X 73751224 73751224 C - SLC16A2 Frame_Shift_Del p.I488Sfs*5 0.08 TCGA-EW-A2FV-01 X 74519697 74519697 C - UPRT Frame_Shift_Del p.R231Gfs*6 0.09 TCGA-EW-A2FV-01 X 75395380 75395380 A - PBDC1 Frame_Shift_Del p.N78Ifs*7 0.10 TCGA-EW-A2FV-01 X 76855019 76855019 T - ATRX Frame_Shift_Del p.D1940Ifs*15 0.09 TCGA-EW-A2FV-01 X 76912112 76912112 A - ATRX Frame_Shift_Del p.Q1385Rfs*105 0.08 TCGA-EW-A2FV-01 X 77112901 77112901 A - MAGT1 Frame_Shift_Del p.S194Qfs*19 0.09 TCGA-EW-A2FV-01 X 77158195 77158195 T - COX7B Frame_Shift_Del p.H34Mfs*9 0.09 TCGA-EW-A2FV-01 X 77276541 77276541 T - ATP7A Frame_Shift_Del p.L962* 0.09 TCGA-EW-A2FV-01 X 78216967 78216967 C - P2RY10 Frame_Shift_Del p.R318Afs*6 0.09 TCGA-EW-A2FV-01 X 79960229 79960229 T - BRWD3 Frame_Shift_Del p.N890Ifs*2 0.12 TCGA-EW-A2FV-01 X 79971722 79971722 T - BRWD3 Frame_Shift_Del p.G754Vfs*3 0.08 TCGA-EW-A2FV-01 X 8538648 8538648 G - KAL1 Frame_Shift_Del p.E319Rfs*41 0.09 TCGA-EW-A2FV-01 X 96140117 96140117 T - RPA4 3'UTR 0.09 TCGA-EW-A2FV-01 X 96212992 96212992 C - DIAPH2 Frame_Shift_Del p.P595Hfs*32 0.09 TCGA-EW-A2FV-01 X 9707627 9707627 C - GPR143 Frame_Shift_Del p.A340Lfs*6 0.10 TCGA-EW-A2FW-01 10 12209886 12209886 G A NUDT5 Intron 0.47 TCGA-EW-A2FW-01 10 8115871 8115872 TC - GATA3 Frame_Shift_Del p.S408Afs*99 0.38 TCGA-EW-A2FW-01 11 103090738 103090738 A T DYNC2H1 Missense_Mutation p.D2976V 0.88 benign(0.008) TCGA-EW-A2FW-01 11 128709348 128709348 G A KCNJ1 Missense_Mutation p.A283V 0.06 tolerated(0.62) benign(0.015) TCGA-EW-A2FW-01 11 62746961 62746961 G A SLC22A6 Missense_Mutation p.R454W 0.42 deleterious(0) probably_damaging(0.946) TCGA-EW-A2FW-01 11 66359044 66359044 C A CCDC87 Missense_Mutation p.M481I 0.43 deleterious(0.01) benign(0.444) TCGA-EW-A2FW-01 13 22275485 22275485 C T FGF9 Missense_Mutation p.R180W 0.46 deleterious(0) probably_damaging(0.998) TCGA-EW-A2FW-01 14 74972854 74972854 G A LTBP2 Silent p.A1358A 0.46 TCGA-EW-A2FW-01 16 1575310 1575310 G A IFT140 Missense_Mutation p.T929M 0.47 deleterious(0) probably_damaging(0.996) TCGA-EW-A2FW-01 17 61685281 61685281 C T TACO1 Silent p.P271P 0.48 TCGA-EW-A2FW-01 17 7611493 7611493 A G EFNB3 Missense_Mutation p.T114A 0.36 deleterious(0) probably_damaging(0.997) TCGA-EW-A2FW-01 19 36255833 36255833 C T C19orf55 Missense_Mutation p.R208C 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-EW-A2FW-01 1 75198992 75198992 C T TYW3 Missense_Mutation p.R22W 0.76 deleterious(0) probably_damaging(0.998) TCGA-EW-A2FW-01 20 2591102 2591102 C A TMC2 Missense_Mutation p.P484H 0.42 deleterious(0) probably_damaging(0.998) TCGA-EW-A2FW-01 20 39795424 39795424 G A PLCG1 Silent p.E742E 0.41 TCGA-EW-A2FW-01 20 56093647 56093647 C A CTCFL Intron 0.77 TCGA-EW-A2FW-01 20 57597974 57597974 G A TUBB1 Silent p.L44L 0.14 TCGA-EW-A2FW-01 20 57598598 57598598 G A TUBB1 Missense_Mutation p.D74N 0.16 deleterious_low_confidence(0.01) benign(0.116) TCGA-EW-A2FW-01 20 57598804 57598808 GAGGG AAAGGA TUBB1 Frame_Shift_Ins p.E108Kfs*18 0.11 TCGA-EW-A2FW-01 20 6017787 6017787 C T CRLS1 Nonsense_Mutation p.Q297* 0.60 TCGA-EW-A2FW-01 21 15870837 15870837 A G SAMSN1 Missense_Mutation p.I350T 0.45 tolerated(0.43) possibly_damaging(0.784) TCGA-EW-A2FW-01 2 141259275 141259275 T G LRP1B Missense_Mutation p.D2944A 0.77 possibly_damaging(0.539) TCGA-EW-A2FW-01 2 220342725 220342725 C T SPEG Missense_Mutation p.A1642V 0.15 probably_damaging(0.995) TCGA-EW-A2FW-01 2 27822524 27822524 C T ZNF512 Nonsense_Mutation p.Q118* 0.13 TCGA-EW-A2FW-01 7 107823285 107823285 C T NRCAM Nonsense_Mutation p.W795* 0.28 TCGA-EW-A2FW-01 7 30662033 30662033 A T GARS Missense_Mutation p.D523V 0.45 tolerated(0.07) benign(0.209) TCGA-EW-A2FW-01 X 135310849 135310849 G A MAP7D3 Missense_Mutation p.R607C 0.06 deleterious(0) probably_damaging(1) TCGA-EW-A2FW-01 X 50378351 50378351 C T SHROOM4 Missense_Mutation p.R241Q 0.36 tolerated(0.41) benign(0.001) TCGA-EW-A423-01 10 104172164 104172164 G A PSD Silent p.A574A 0.37 TCGA-EW-A423-01 10 105356422 105356422 T A SH3PXD2A 3'UTR 0.42 TCGA-EW-A423-01 10 43691231 43691231 G A RASGEF1A 3'Flank 0.39 TCGA-EW-A423-01 10 95386562 95386562 G A PDE6C Silent p.P335P 0.25 TCGA-EW-A423-01 11 1262580 1262580 C T MUC5B Silent p.P1490P 0.12 TCGA-EW-A423-01 11 126870458 126870458 C T KIRREL3 5'UTR 0.74 TCGA-EW-A423-01 11 17794066 17794066 C T KCNC1 Silent p.V475V 0.34 TCGA-EW-A423-01 11 31832720 31832720 C T PAX6 Intron 0.39 TCGA-EW-A423-01 11 36600032 36600032 C T RAG1 3'UTR 0.10 TCGA-EW-A423-01 11 771072 771072 C T PDDC1 Missense_Mutation p.D193N 0.04 deleterious(0) probably_damaging(1) TCGA-EW-A423-01 11 95564559 95564559 A G CEP57 3'UTR 0.28 TCGA-EW-A423-01 12 19671508 19671508 C T AEBP2 Intron 0.62 TCGA-EW-A423-01 12 52943888 52943888 G A KRT71 Missense_Mutation p.T194M 0.20 tolerated(0.24) benign(0.041) TCGA-EW-A423-01 13 26594129 26594129 G A ATP8A2 3'UTR 0.31 TCGA-EW-A423-01 13 96506701 96506701 C T UGGT2 Missense_Mutation p.R1346Q 0.18 deleterious(0.03) probably_damaging(1) TCGA-EW-A423-01 14 39501886 39501886 T C SEC23A 3'UTR 0.24 TCGA-EW-A423-01 15 72668338 72668338 G A HEXA 5'UTR 0.66 TCGA-EW-A423-01 16 21262201 21262201 C T ANKS4B 3'UTR 0.46 TCGA-EW-A423-01 16 30376911 30376911 T A TBC1D10B Missense_Mutation p.S321C 0.18 deleterious(0.01) possibly_damaging(0.662) TCGA-EW-A423-01 16 30744741 30744741 G T SRCAP Missense_Mutation p.D2090Y 0.25 probably_damaging(0.997) TCGA-EW-A423-01 16 68863630 68863631 - CCTCATGAGT CDH1 Frame_Shift_Ins p.V794Pfs*16 0.34 TCGA-EW-A423-01 17 47074903 47074903 G A IGF2BP1 5'UTR 0.47 TCGA-EW-A423-01 17 71431705 71431705 C T SDK2 Missense_Mutation p.R360H 0.16 tolerated(0.14) benign(0.005) TCGA-EW-A423-01 17 72948429 72948429 C T HID1 Silent p.P693P 0.22 TCGA-EW-A423-01 17 80393721 80393721 C T HEXDC Nonsense_Mutation p.R202* 0.22 TCGA-EW-A423-01 17 9818699 9818699 A G GAS7 3'UTR 0.14 TCGA-EW-A423-01 18 22806796 22806796 G A ZNF521 Silent p.N362N 0.43 TCGA-EW-A423-01 18 55151441 55151441 A - ONECUT2 3'UTR 0.74 TCGA-EW-A423-01 18 63530268 63530268 G A CDH7 Intron 0.78 TCGA-EW-A423-01 19 11287434 11287434 G A KANK2 Missense_Mutation p.T535I 0.39 tolerated(0.05) benign(0.246) TCGA-EW-A423-01 19 12383720 12383720 T C ZNF44 Silent p.K498K 0.28 TCGA-EW-A423-01 19 13030082 13030082 C A SYCE2 5'UTR 0.36 TCGA-EW-A423-01 19 23543146 23543146 C G ZNF91 Missense_Mutation p.E879Q 0.41 deleterious(0.02) possibly_damaging(0.469) TCGA-EW-A423-01 19 23543480 23543480 C G ZNF91 Missense_Mutation p.E767D 0.36 deleterious(0.05) probably_damaging(0.97) TCGA-EW-A423-01 19 23543820 23543820 C G ZNF91 Missense_Mutation p.G654A 0.44 deleterious(0.01) probably_damaging(0.985) TCGA-EW-A423-01 19 38916711 38916711 C T RASGRP4 Silent p.K7K 0.34 TCGA-EW-A423-01 19 52130755 52130755 G A SIGLEC5 Silent p.N414N 0.20 TCGA-EW-A423-01 19 5925680 5925680 G A RANBP3 Silent p.T294T 0.44 TCGA-EW-A423-01 19 7605846 7605846 C T PNPLA6 Missense_Mutation p.A287V 0.07 deleterious(0.01) possibly_damaging(0.534) TCGA-EW-A423-01 1 100985240 100985240 T C CDC14A 3'UTR 0.36 TCGA-EW-A423-01 1 120480488 120480488 G A NOTCH2 Missense_Mutation p.S1110F 0.14 tolerated(0.72) benign(0.002) TCGA-EW-A423-01 1 162722987 162722987 G A DDR2 Missense_Mutation p.R62K 0.22 deleterious(0) probably_damaging(1) TCGA-EW-A423-01 1 203456411 203456411 C A PRELP 3'UTR 0.13 TCGA-EW-A423-01 1 247875683 247875683 G A OR6F1 Silent p.A125A 0.21 TCGA-EW-A423-01 20 1161794 1161794 G A TMEM74B Missense_Mutation p.R157W 0.18 deleterious(0) probably_damaging(1) TCGA-EW-A423-01 21 46918318 46918318 G A COL18A1 Intron 0.51 TCGA-EW-A423-01 21 47695144 47695144 G A MCM3AP Missense_Mutation p.R652C 0.44 deleterious(0) probably_damaging(0.915) TCGA-EW-A423-01 22 41527549 41527549 G A EP300 Missense_Mutation p.M480I 0.47 unknown(0) TCGA-EW-A423-01 2 101667087 101667087 C T TBC1D8 Silent p.P201P 0.27 TCGA-EW-A423-01 2 15743373 15743373 C T DDX1 Missense_Mutation p.S150F 0.34 deleterious(0) probably_damaging(0.954) TCGA-EW-A423-01 2 178977293 178977293 C G RBM45 Missense_Mutation p.S7C 0.37 tolerated_low_confidence(0.35) benign(0) TCGA-EW-A423-01 2 179594184 179594184 C T TTN Silent p.L6233L 0.38 TCGA-EW-A423-01 2 179595299 179595299 C T TTN Silent p.G5987G 0.28 TCGA-EW-A423-01 2 179595307 179595307 C T TTN Missense_Mutation p.D5985N 0.29 TCGA-EW-A423-01 2 23916391 23916391 G A KLHL29 Missense_Mutation p.R512H 0.15 deleterious(0) probably_damaging(0.998) TCGA-EW-A423-01 2 44683864 44683864 C T CAMKMT Intron 0.19 TCGA-EW-A423-01 2 73651968 73651968 G C ALMS1 Missense_Mutation p.R392P 0.37 benign(0.007) TCGA-EW-A423-01 2 99758026 99758027 - CGCAGGCGCACGCCCA C2ORF15 5'UTR 0.09 TCGA-EW-A423-01 3 130454763 130454763 A G PIK3R4 Missense_Mutation p.F273L 0.50 tolerated(0.68) benign(0.001) TCGA-EW-A423-01 3 164906171 164906171 C T SLITRK3 Silent p.K816K 0.25 TCGA-EW-A423-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.45 tolerated(0.11) possibly_damaging(0.529) TCGA-EW-A423-01 4 106861703 106861703 T - NPNT Frame_Shift_Del p.C255Afs*27 0.30 TCGA-EW-A423-01 4 119952660 119952660 T A SYNPO2 Missense_Mutation p.S910R 0.29 deleterious(0.01) possibly_damaging(0.9) TCGA-EW-A423-01 4 20598129 20598129 G A SLIT2 Missense_Mutation p.V1138I 0.55 tolerated(0.25) benign(0.023) TCGA-EW-A423-01 4 55606530 55606530 G C KIT 3'UTR 0.29 TCGA-EW-A423-01 5 106722968 106722968 T C EFNA5 Missense_Mutation p.N178S 0.24 tolerated(0.21) benign(0.078) TCGA-EW-A423-01 5 140482680 140482680 T G PCDHB3 3'UTR 0.22 TCGA-EW-A423-01 5 60079993 60079993 T A ELOVL7 Intron 0.15 TCGA-EW-A423-01 5 6663007 6663007 G A SRD5A1 Nonsense_Mutation p.W214* 0.16 TCGA-EW-A423-01 6 33236395 33236395 T C VPS52 Missense_Mutation p.R194G 0.61 tolerated(0.06) benign(0) TCGA-EW-A423-01 6 33359619 33359619 T G KIFC1 5'UTR 0.38 TCGA-EW-A423-01 6 5771710 5771710 G A FARS2 3'Flank 0.23 TCGA-EW-A423-01 6 70642694 70642694 A C COL19A1 Missense_Mutation p.K229T 0.34 tolerated(0.65) unknown(0) TCGA-EW-A423-01 7 128032468 128032468 G A IMPDH1 3'UTR 0.38 TCGA-EW-A423-01 7 150721003 150721003 C T ATG9B Missense_Mutation p.E170K 0.42 deleterious(0.02) possibly_damaging(0.848) TCGA-EW-A423-01 7 157926524 157926524 G A PTPRN2 Silent p.A467A 0.36 TCGA-EW-A423-01 7 95499217 95499217 G A DYNC1I1 Missense_Mutation p.V150M 0.31 tolerated(0.81) benign(0.105) TCGA-EW-A423-01 8 110439324 110439324 G C PKHD1L1 Missense_Mutation p.C980S 0.22 deleterious(0) possibly_damaging(0.53) TCGA-EW-A423-01 8 25747294 25747294 C G EBF2 Missense_Mutation p.R242T 0.24 deleterious(0) possibly_damaging(0.862) TCGA-EW-A423-01 8 81552614 81552614 C G ZNF704 3'UTR 0.42 TCGA-EW-A423-01 8 92971664 92971664 G A RUNX1T1 3'Flank 0.26 TCGA-EW-A423-01 8 92971666 92971666 G A RUNX1T1 3'Flank 0.19 TCGA-EW-A423-01 8 92971671 92971671 T C RUNX1T1 3'Flank 0.23 TCGA-EW-A423-01 9 100124574 100124574 G C CCDC180 Missense_Mutation p.E1295D 0.60 tolerated(0.61) benign(0.001) TCGA-EW-A423-01 9 117848957 117848957 G A TNC Silent p.H351H 0.68 TCGA-EW-A423-01 9 117849163 117849163 G A TNC Silent p.L283L 0.63 TCGA-EW-A423-01 9 121929962 121929962 G C BRINP1 Silent p.V562V 0.67 TCGA-EW-A423-01 X 34961262 34961262 C T FAM47B Missense_Mutation p.S105F 0.44 deleterious(0) probably_damaging(0.999) TCGA-EW-A423-01 X 37431625 37431625 G A LANCL3 Missense_Mutation p.D168N 0.33 deleterious(0.02) probably_damaging(0.937) TCGA-EW-A423-01 X 47518369 47518369 C A UXT 5'UTR 0.21 TCGA-EW-A423-01 X 54840889 54840889 C T MAGED2 Intron 0.43 TCGA-EW-A423-01 X 62569856 62569856 G A SPIN4 3'UTR 0.42 TCGA-EW-A6S9-01 10 102723542 102723543 - T FAM178A 3'Flank 0.13 TCGA-EW-A6S9-01 11 66407707 66407709 GAA - RBM4 Intron 0.48 TCGA-EW-A6S9-01 14 100576013 100576013 G A EVL Intron 0.24 TCGA-EW-A6S9-01 15 23686246 23686246 A G GOLGA6L2 Missense_Mutation p.M459T 0.25 unknown(0) TCGA-EW-A6S9-01 15 28397945 28397945 G T HERC2 Missense_Mutation p.T3593N 0.13 probably_damaging(0.972) TCGA-EW-A6S9-01 15 84652000 84652000 G T ADAMTSL3 Missense_Mutation p.R1207M 0.37 tolerated(0.08) possibly_damaging(0.838) TCGA-EW-A6S9-01 16 51172970 51172970 C T SALL1 Missense_Mutation p.D1055N 0.37 tolerated(0.75) benign(0.037) TCGA-EW-A6S9-01 16 83994674 83994674 G A OSGIN1 Missense_Mutation p.R162Q 0.39 tolerated(0.08) possibly_damaging(0.535) TCGA-EW-A6S9-01 17 16667444 16667444 A - CCDC144A Frame_Shift_Del p.K1353Rfs*13 0.10 TCGA-EW-A6S9-01 17 37186817 37186817 G A CTD-2206N4.2 5'Flank 0.04 TCGA-EW-A6S9-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.82 deleterious(0) probably_damaging(1) TCGA-EW-A6S9-01 19 31038888 31038888 G A ZNF536 Missense_Mutation p.G788S 0.05 deleterious(0.03) probably_damaging(1) TCGA-EW-A6S9-01 19 40514435 40514435 G C ZNF546 Missense_Mutation p.W119C 0.31 deleterious(0.03) possibly_damaging(0.759) TCGA-EW-A6S9-01 1 149291219 149291219 C A RP11-403I13.8 RNA 0.19 TCGA-EW-A6S9-01 1 240072592 240072592 C T CHRM3 3'UTR 0.35 TCGA-EW-A6S9-01 1 39990855 39990855 G A BMP8A Intron 0.18 TCGA-EW-A6S9-01 1 7840521 7840521 G T VAMP3 3'UTR 0.60 TCGA-EW-A6S9-01 1 84703931 84703932 - A PRKACB 3'UTR 0.14 TCGA-EW-A6S9-01 2 119699818 119699818 C T MARCO 5'UTR 0.19 TCGA-EW-A6S9-01 2 225651758 225651758 C T DOCK10 Missense_Mutation p.R1879H 0.28 deleterious(0) probably_damaging(0.999) TCGA-EW-A6S9-01 3 149679398 149679398 C G RNF13 3'UTR 0.18 TCGA-EW-A6S9-01 3 42984049 42984049 A G KRBOX1 Silent p.R99R 0.09 TCGA-EW-A6S9-01 4 156757954 156757954 G A ASIC5 Silent p.P374P 0.39 TCGA-EW-A6S9-01 5 24511603 24511603 G T CDH10 Missense_Mutation p.L279I 0.31 deleterious(0.05) benign(0.03) TCGA-EW-A6S9-01 5 33984527 33984527 C T SLC45A2 Silent p.A54A 0.31 TCGA-EW-A6S9-01 6 102124618 102124618 G A GRIK2 Missense_Mutation p.G221D 0.24 tolerated(0.22) possibly_damaging(0.877) TCGA-EW-A6S9-01 6 116574976 116574976 G C TSPYL4 Missense_Mutation p.P66A 0.92 tolerated(0.11) benign(0.001) TCGA-EW-A6S9-01 6 34494115 34494115 G A PACSIN1 Silent p.A11A 0.15 TCGA-EW-A6S9-01 6 97423888 97423888 G A KLHL32 Silent p.L13L 0.44 TCGA-EW-A6S9-01 6 97423945 97423945 G A KLHL32 Silent p.L32L 0.36 TCGA-EW-A6S9-01 7 127721959 127721959 C G SND1 Intron 0.08 TCGA-EW-A6S9-01 7 15651206 15651206 A C MEOX2 3'UTR 0.27 TCGA-EW-A6S9-01 7 99030945 99030945 C T ATP5J2-PTCD1 Missense_Mutation p.G233R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EW-A6S9-01 X 10176426 10176426 C T CLCN4 Silent p.S395S 0.44 TCGA-EW-A6S9-01 X 135127814 135127814 G A SLC9A6 3'UTR 0.33 TCGA-EW-A6SA-01 10 120801774 120801774 G A EIF3A Silent p.D1086D 0.14 TCGA-EW-A6SA-01 10 134788346 134788346 G A LINC01168 RNA 0.12 TCGA-EW-A6SA-01 10 24833152 24833152 G A KIAA1217 Silent p.P1651P 0.09 TCGA-EW-A6SA-01 10 29746742 29746742 T C SVIL 3'UTR 0.23 TCGA-EW-A6SA-01 10 49654261 49654261 C A ARHGAP22 3'Flank 0.25 TCGA-EW-A6SA-01 10 73475645 73475645 C G C10orf105 3'UTR 0.16 TCGA-EW-A6SA-01 10 7841052 7841052 C T ATP5C1 Missense_Mutation p.S108F 0.22 deleterious(0.03) benign(0.306) TCGA-EW-A6SA-01 10 8111501 8111512 GAGGAATGCCAA C GATA3 Frame_Shift_Del p.R330Sfs*19 0.38 TCGA-EW-A6SA-01 11 107977431 107977431 C T CUL5 3'UTR 0.06 TCGA-EW-A6SA-01 11 115047291 115047291 G C CADM1 Missense_Mutation p.A411G 0.10 deleterious(0) probably_damaging(0.999) TCGA-EW-A6SA-01 11 51412308 51412308 A C OR4A5 Missense_Mutation p.L30V 0.06 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-EW-A6SA-01 11 64360342 64360342 C T SLC22A12 Missense_Mutation p.P165L 0.22 tolerated(0.65) benign(0.124) TCGA-EW-A6SA-01 11 65268722 65268723 AT - MALAT1 RNA 0.15 TCGA-EW-A6SA-01 12 119866550 119866550 G T CCDC60 Missense_Mutation p.K51N 0.14 deleterious(0) possibly_damaging(0.676) TCGA-EW-A6SA-01 12 131623761 131623761 G C GPR133 Missense_Mutation p.D860H 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EW-A6SA-01 12 4410222 4410222 T G CCND2 3'UTR 0.16 TCGA-EW-A6SA-01 12 46316921 46316921 G C SCAF11 Missense_Mutation p.S1308C 0.39 deleterious(0.03) benign(0.021) TCGA-EW-A6SA-01 12 53004589 53004589 C T KRT73 Missense_Mutation p.A381T 0.23 deleterious(0.03) benign(0.135) TCGA-EW-A6SA-01 12 68721241 68721241 G A MDM1 Intron 0.29 TCGA-EW-A6SA-01 12 73059321 73059321 T C TRHDE 3'UTR 0.21 TCGA-EW-A6SA-01 12 7923051 7923051 G A NANOGNB Missense_Mutation p.C151Y 0.08 tolerated(1) benign(0.001) TCGA-EW-A6SA-01 12 88376963 88376963 G A C12orf50 Missense_Mutation p.T379M 0.13 tolerated(0.47) benign(0.005) TCGA-EW-A6SA-01 12 8926121 8926121 A G RIMKLB Missense_Mutation p.D301G 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-EW-A6SA-01 13 36801306 36801306 G T CCDC169 3'UTR 0.35 TCGA-EW-A6SA-01 13 77455663 77455663 T G KCTD12 3'UTR 0.07 TCGA-EW-A6SA-01 14 21168754 21168754 C A RNASE4 3'UTR 0.40 TCGA-EW-A6SA-01 15 37391839 37391839 C T MEIS2 5'UTR 0.46 TCGA-EW-A6SA-01 15 81243062 81243062 T A KIAA1199 3'UTR 0.38 TCGA-EW-A6SA-01 15 81644037 81644037 C T TMC3 Missense_Mutation p.E361K 0.76 deleterious(0) probably_damaging(0.991) TCGA-EW-A6SA-01 15 86123043 86123043 G A AKAP13 Missense_Mutation p.V582I 0.21 tolerated_low_confidence(0.17) benign(0.053) TCGA-EW-A6SA-01 15 98515799 98515799 G T ARRDC4 3'UTR 0.18 TCGA-EW-A6SA-01 16 1116228 1116228 G A RP11-161M6.5 RNA 0.21 TCGA-EW-A6SA-01 16 14041536 14041536 C T ERCC4 Missense_Mutation p.L695F 0.07 deleterious(0) probably_damaging(1) TCGA-EW-A6SA-01 16 22926934 22926934 G A HS3ST2 3'UTR 0.62 TCGA-EW-A6SA-01 17 21910891 21910891 G T RP11-744K17.9 RNA 0.15 TCGA-EW-A6SA-01 17 21910892 21910892 C A RP11-744K17.9 RNA 0.15 TCGA-EW-A6SA-01 17 2290789 2290789 G A MNT Silent p.H385H 0.52 TCGA-EW-A6SA-01 17 27943778 27943778 G A CORO6 Missense_Mutation p.R316W 0.17 deleterious(0) probably_damaging(0.995) TCGA-EW-A6SA-01 17 29559856 29559856 C T NF1 Silent p.N1151N 0.05 TCGA-EW-A6SA-01 17 66508592 66508592 T C PRKAR1A 5'UTR 0.12 TCGA-EW-A6SA-01 17 66508593 66508593 C G PRKAR1A 5'UTR 0.12 TCGA-EW-A6SA-01 17 76849347 76849347 T A TIMP2 3'UTR 0.10 TCGA-EW-A6SA-01 17 78866656 78866656 T C RPTOR Silent p.S743S 0.05 TCGA-EW-A6SA-01 18 11854036 11854036 C A CHMP1B 3'UTR 0.11 TCGA-EW-A6SA-01 18 2718406 2718406 C G SMCHD1 Missense_Mutation p.S811C 0.09 tolerated(0.08) benign(0.004) TCGA-EW-A6SA-01 18 72346962 72346962 C T ZNF407 Silent p.S1329S 0.46 TCGA-EW-A6SA-01 18 74153881 74153881 G A ZNF516 Missense_Mutation p.S377L 0.14 tolerated(0.29) benign(0) TCGA-EW-A6SA-01 18 8314815 8314815 G C PTPRM Missense_Mutation p.G960A 0.11 tolerated(0.14) benign(0.004) TCGA-EW-A6SA-01 19 51020808 51020808 G A LRRC4B 3'UTR 0.32 TCGA-EW-A6SA-01 19 55447772 55447772 C T NLRP7 Silent p.A719A 0.14 TCGA-EW-A6SA-01 19 59059886 59059886 C G TRIM28 Nonsense_Mutation p.S417* 0.36 TCGA-EW-A6SA-01 19 59059953 59059953 C G TRIM28 Missense_Mutation p.S439R 0.41 tolerated(0.31) benign(0.11) TCGA-EW-A6SA-01 1 103435780 103435780 C T COL11A1 Missense_Mutation p.E953K 0.60 unknown(0) TCGA-EW-A6SA-01 1 10412697 10412697 C T KIF1B Missense_Mutation p.R1274W 0.57 deleterious(0) probably_damaging(0.996) TCGA-EW-A6SA-01 1 114968272 114968272 C A TRIM33 Silent p.G498G 0.04 TCGA-EW-A6SA-01 1 115316320 115316320 C T SIKE1 3'UTR 0.52 TCGA-EW-A6SA-01 1 115576691 115576691 G A TSHB Missense_Mutation p.C87Y 0.04 deleterious(0) probably_damaging(1) TCGA-EW-A6SA-01 1 12954559 12954559 C T PRAMEF10 Missense_Mutation p.G242S 0.09 tolerated(0.74) benign(0.013) TCGA-EW-A6SA-01 1 153641023 153641023 G A ILF2 Missense_Mutation p.A40V 0.10 tolerated(0.3) benign(0.058) TCGA-EW-A6SA-01 1 166816759 166816759 C T POGK Silent p.I96I 0.20 TCGA-EW-A6SA-01 1 182549076 182549076 C T RNASEL Intron 0.46 TCGA-EW-A6SA-01 1 182549140 182549140 C T RNASEL Intron 0.36 TCGA-EW-A6SA-01 1 182550359 182550359 C T RNASEL Splice_Site p.X635_splice 0.43 TCGA-EW-A6SA-01 1 197127005 197127042 CACAAGGGCTGGGCTAGACTTTACAGTTTACACACACA TCACAAGGGCTGGGCTAGACTTTACAGTTTACACACAC ZBTB41 3'UTR 0.09 TCGA-EW-A6SA-01 1 209849033 209849033 G C G0S2 Missense_Mutation p.E2Q 0.08 deleterious(0) probably_damaging(0.919) TCGA-EW-A6SA-01 1 22929839 22929839 C A EPHA8 3'UTR 0.68 TCGA-EW-A6SA-01 1 26670400 26670400 C T AIM1L Missense_Mutation p.A43T 0.10 tolerated_low_confidence(0.78) benign(0) TCGA-EW-A6SA-01 1 27101609 27101609 C T ARID1A Nonsense_Mutation p.Q1631* 0.73 TCGA-EW-A6SA-01 1 33560233 33560233 C T ADC Silent p.T224T 0.12 TCGA-EW-A6SA-01 1 38510187 38510187 A G POU3F1 3'UTR 0.30 TCGA-EW-A6SA-01 1 47609040 47609040 C A CYP4A22 Missense_Mutation p.H204N 0.08 tolerated(0.12) possibly_damaging(0.493) TCGA-EW-A6SA-01 1 61921439 61921439 G A NFIA 3'Flank 0.16 TCGA-EW-A6SA-01 1 65141135 65141135 G T CACHD1 Missense_Mutation p.A876S 0.11 deleterious(0.01) benign(0.015) TCGA-EW-A6SA-01 20 31805352 31805352 C G BPIFA3 Missense_Mutation p.P4A 0.09 tolerated(0.05) probably_damaging(0.986) TCGA-EW-A6SA-01 20 31805378 31805378 C T BPIFA3 Silent p.L12L 0.12 TCGA-EW-A6SA-01 20 31805385 31805385 C T BPIFA3 Silent p.L15L 0.11 TCGA-EW-A6SA-01 20 44680421 44680421 C T SLC12A5 Silent p.L786L 0.36 TCGA-EW-A6SA-01 20 9402005 9402005 A C PLCB4 Missense_Mutation p.Y727S 0.21 deleterious(0) probably_damaging(1) TCGA-EW-A6SA-01 22 44681567 44681567 C A KIAA1644 Missense_Mutation p.V114F 0.86 deleterious(0.01) benign(0.101) TCGA-EW-A6SA-01 2 128460268 128460268 T - WDR33 3'UTR 0.08 TCGA-EW-A6SA-01 2 182438595 182438595 C T CERKL Silent p.P166P 0.13 TCGA-EW-A6SA-01 2 183593678 183593678 G A DNAJC10 Missense_Mutation p.G197E 0.11 deleterious(0) probably_damaging(0.91) TCGA-EW-A6SA-01 2 192011403 192011403 C T STAT4 Missense_Mutation p.R70H 0.08 deleterious(0) probably_damaging(0.922) TCGA-EW-A6SA-01 2 219562258 219562258 C G STK36 Missense_Mutation p.S945C 0.46 deleterious(0.02) possibly_damaging(0.77) TCGA-EW-A6SA-01 3 124731806 124731806 C T HEG1 Missense_Mutation p.V873I 0.13 tolerated(0.25) benign(0.004) TCGA-EW-A6SA-01 3 130712777 130712777 C T ATP2C1 Missense_Mutation p.S665L 0.45 deleterious(0) benign(0.105) TCGA-EW-A6SA-01 3 157155310 157155310 T C PTX3 Missense_Mutation p.C47R 0.19 deleterious(0) possibly_damaging(0.794) TCGA-EW-A6SA-01 3 180702399 180702399 A T DNAJC19 3'UTR 0.08 TCGA-EW-A6SA-01 3 61548008 61548008 T G PTPRG Missense_Mutation p.I16S 0.14 deleterious_low_confidence(0) benign(0.001) TCGA-EW-A6SA-01 4 102783765 102783765 G A BANK1 Missense_Mutation p.R236H 0.90 tolerated(0.26) benign(0) TCGA-EW-A6SA-01 4 153893659 153893659 G C FHDC1 Missense_Mutation p.R450T 0.13 tolerated(0.06) possibly_damaging(0.457) TCGA-EW-A6SA-01 4 2321979 2321979 C T ZFYVE28 Missense_Mutation p.D241N 0.05 deleterious(0.03) possibly_damaging(0.881) TCGA-EW-A6SA-01 4 3949474 3949474 G T FAM86EP RNA 0.20 TCGA-EW-A6SA-01 4 71686141 71686141 T G GRSF1 3'UTR 0.11 TCGA-EW-A6SA-01 5 108290584 108290584 C A FER Missense_Mutation p.S495Y 0.10 deleterious(0) probably_damaging(0.938) TCGA-EW-A6SA-01 5 132211275 132211275 G A AFF4 3'UTR 0.13 TCGA-EW-A6SA-01 5 139884741 139884741 C G ANKHD1 Missense_Mutation p.A1062G 0.12 possibly_damaging(0.694) TCGA-EW-A6SA-01 5 140481550 140481550 G A PCDHB3 Silent p.V439V 0.12 TCGA-EW-A6SA-01 5 176295848 176295848 C T UNC5A Missense_Mutation p.R202W 0.59 deleterious(0.02) possibly_damaging(0.849) TCGA-EW-A6SA-01 5 56171013 56171013 C T MAP3K1 Missense_Mutation p.P614L 0.12 tolerated(0.3) benign(0.001) TCGA-EW-A6SA-01 5 6312384 6312384 G A CTD-2324F15.2 RNA 0.44 TCGA-EW-A6SA-01 5 65054641 65054641 G A NLN Missense_Mutation p.V97I 0.17 deleterious(0.05) benign(0.069) TCGA-EW-A6SA-01 5 95194628 95194628 C G C5orf27 Silent p.T65T 0.15 TCGA-EW-A6SA-01 6 10404933 10404933 G A TFAP2A Missense_Mutation p.S191F 0.11 deleterious(0.05) benign(0.112) TCGA-EW-A6SA-01 6 10404935 10404935 G A TFAP2A Silent p.V190V 0.11 TCGA-EW-A6SA-01 6 105232041 105232041 T G HACE1 Missense_Mutation p.K496Q 0.06 tolerated(0.05) benign(0.153) TCGA-EW-A6SA-01 6 153314078 153314078 C A MTRF1L Missense_Mutation p.R240I 0.13 deleterious(0) benign(0.274) TCGA-EW-A6SA-01 6 155565907 155565907 C T TIAM2 Missense_Mutation p.S1178L 0.40 tolerated(0.06) benign(0.439) TCGA-EW-A6SA-01 6 170592489 170592489 G A DLL1 Silent p.S626S 0.24 TCGA-EW-A6SA-01 6 46976935 46976935 C T GPR110 Missense_Mutation p.A746T 0.16 deleterious(0) probably_damaging(1) TCGA-EW-A6SA-01 6 56342220 56342220 C T DST Missense_Mutation p.V4577I 0.08 benign(0.002) TCGA-EW-A6SA-01 7 148524270 148524270 T C EZH2 Silent p.E238E 0.29 TCGA-EW-A6SA-01 7 155174897 155174897 G A AC008060.7 Missense_Mutation p.A27T 0.32 possibly_damaging(0.691) TCGA-EW-A6SA-01 7 17379422 17379422 A G AHR Missense_Mutation p.Q658R 0.53 tolerated_low_confidence(0.37) benign(0.067) TCGA-EW-A6SA-01 8 130863113 130863113 C T FAM49B Missense_Mutation p.M227I 0.06 tolerated(0.09) possibly_damaging(0.513) TCGA-EW-A6SA-01 8 145060525 145060525 C T PARP10 Splice_Site p.X1_splice 0.61 TCGA-EW-A6SA-01 8 145066892 145066892 G A GRINA Silent p.G333G 0.09 TCGA-EW-A6SA-01 8 42587022 42587022 A T CHRNB3 Missense_Mutation p.D191V 0.06 deleterious(0) probably_damaging(1) TCGA-EW-A6SA-01 8 98863690 98863690 C T LAPTM4B Silent p.Y314Y 0.11 TCGA-EW-A6SA-01 9 116060197 116060197 G T RNF183 Missense_Mutation p.H90N 0.20 tolerated(0.3) probably_damaging(0.974) TCGA-EW-A6SA-01 9 21227388 21227388 A T IFNA17 3'UTR 0.17 TCGA-EW-A6SA-01 9 34993353 34993353 T C DNAJB5 Silent p.A155A 0.42 TCGA-EW-A6SA-01 9 36124235 36124235 A C RECK 3'UTR 0.05 TCGA-EW-A6SA-01 9 73001527 73001527 C A KLF9 3'UTR 0.96 TCGA-EW-A6SA-01 X 142803698 142803698 T G SPANXN2 Missense_Mutation p.K22T 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.887) TCGA-EW-A6SA-01 X 155227449 155227449 G T IL9R Nonsense_Mutation p.E9* 0.62 TCGA-EW-A6SA-01 X 155239503 155239503 C T IL9R Missense_Mutation p.A332V 0.28 tolerated(0.21) benign(0.039) TCGA-EW-A6SB-01 10 118733425 118733425 C G KIAA1598 Intron 0.13 TCGA-EW-A6SB-01 10 32320167 32320167 G A KIF5B Missense_Mutation p.A472V 0.18 tolerated(0.23) benign(0.039) TCGA-EW-A6SB-01 10 73122239 73122239 C G SLC29A3 Silent p.L434L 0.14 TCGA-EW-A6SB-01 10 81058935 81058935 A G ZMIZ1 Missense_Mutation p.T599A 0.10 benign(0.338) TCGA-EW-A6SB-01 11 113146049 113146049 C T NCAM1 Silent p.A888A 0.10 TCGA-EW-A6SB-01 11 113672255 113672255 A G USP28 Missense_Mutation p.I1003T 0.10 deleterious(0.01) possibly_damaging(0.87) TCGA-EW-A6SB-01 11 1577510 1577510 G A DUSP8 3'UTR 0.14 TCGA-EW-A6SB-01 11 404567 404567 T C PKP3 Nonstop_Mutation p.*798Qext*? 0.12 TCGA-EW-A6SB-01 11 7818441 7818441 G T OR5P2 Missense_Mutation p.L17I 0.15 tolerated(0.34) possibly_damaging(0.589) TCGA-EW-A6SB-01 12 124163799 124163799 C G TCTN2 Missense_Mutation p.T176R 0.06 deleterious(0) probably_damaging(0.988) TCGA-EW-A6SB-01 12 29596422 29596422 C T OVCH1 Missense_Mutation p.R1010K 0.12 tolerated(0.36) benign(0.002) TCGA-EW-A6SB-01 12 46328259 46328259 T C SCAF11 Missense_Mutation p.K165E 0.10 tolerated(0.06) possibly_damaging(0.813) TCGA-EW-A6SB-01 12 53421934 53421934 A T EIF4B Missense_Mutation p.D314V 0.07 deleterious(0) possibly_damaging(0.804) TCGA-EW-A6SB-01 12 6940514 6940514 G C LEPREL2 Missense_Mutation p.E373Q 0.09 tolerated(0.2) benign(0.417) TCGA-EW-A6SB-01 12 72680685 72680685 C T TRHDE Missense_Mutation p.A335V 0.19 tolerated(0.33) benign(0.383) TCGA-EW-A6SB-01 12 7556203 7556203 A G CD163L1 Missense_Mutation p.W446R 0.07 deleterious(0) probably_damaging(1) TCGA-EW-A6SB-01 12 88560351 88560351 G C TMTC3 Missense_Mutation p.V348L 0.11 tolerated(0.49) benign(0.036) TCGA-EW-A6SB-01 13 39264243 39264243 G A FREM2 Missense_Mutation p.R921K 0.17 tolerated(0.08) benign(0.007) TCGA-EW-A6SB-01 13 99112631 99112631 C T STK24 Missense_Mutation p.A385T 0.19 tolerated_low_confidence(0.21) benign(0.003) TCGA-EW-A6SB-01 14 22600825 22600825 C G TRAV8-7 Missense_Mutation p.S57C 0.20 deleterious(0) possibly_damaging(0.589) TCGA-EW-A6SB-01 14 78174341 78174341 T C ALKBH1 Missense_Mutation p.K3E 0.06 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-EW-A6SB-01 15 30380085 30380085 A G GOLGA8J Intron 0.12 TCGA-EW-A6SB-01 16 67203681 67203681 C T HSF4 Missense_Mutation p.S491F 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.724) TCGA-EW-A6SB-01 17 10450860 10450860 T C MYH2 Missense_Mutation p.M94V 0.11 deleterious(0.04) benign(0.13) TCGA-EW-A6SB-01 17 27621095 27621095 C T NUFIP2 5'UTR 0.08 TCGA-EW-A6SB-01 17 58508553 58508553 G C C17orf64 Missense_Mutation p.E213Q 0.20 deleterious_low_confidence(0.04) benign(0.055) TCGA-EW-A6SB-01 17 6978576 6978576 T G CLEC10A Intron 0.13 TCGA-EW-A6SB-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.19 deleterious(0) probably_damaging(0.997) TCGA-EW-A6SB-01 19 18779651 18779651 G A KLHL26 Missense_Mutation p.D482N 0.38 tolerated(0.21) possibly_damaging(0.899) TCGA-EW-A6SB-01 19 41235145 41235145 C G ITPKC Missense_Mutation p.R432G 0.10 deleterious(0.01) benign(0.033) TCGA-EW-A6SB-01 19 44891970 44891970 G A ZNF285 Missense_Mutation p.T146I 0.18 tolerated(0.64) benign(0.116) TCGA-EW-A6SB-01 1 155823441 155823441 G A GON4L Missense_Mutation p.S44L 0.08 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-EW-A6SB-01 1 156124472 156124472 G A SEMA4A Missense_Mutation p.G35R 0.26 tolerated(0.07) benign(0.038) TCGA-EW-A6SB-01 1 173883923 173883923 T C SERPINC1 Missense_Mutation p.E59G 0.14 tolerated(0.09) benign(0.005) TCGA-EW-A6SB-01 1 190066855 190066855 T C BRINP3 3'UTR 0.05 TCGA-EW-A6SB-01 1 207871141 207871141 C T CR1L Silent p.G355G 0.20 TCGA-EW-A6SB-01 1 34102071 34102071 C T CSMD2 Missense_Mutation p.V1580I 0.06 tolerated(0.79) benign(0.007) TCGA-EW-A6SB-01 1 34330334 34330334 A G HMGB4 Missense_Mutation p.K181R 0.23 tolerated(0.14) benign(0.001) TCGA-EW-A6SB-01 1 45221767 45221767 G C KIF2C Missense_Mutation p.D279H 0.06 deleterious(0) probably_damaging(1) TCGA-EW-A6SB-01 1 57756672 57756672 C G DAB1 Missense_Mutation p.V11L 0.31 tolerated_low_confidence(0.23) benign(0.06) TCGA-EW-A6SB-01 1 70385364 70385364 C T LRRC7 Intron 0.12 TCGA-EW-A6SB-01 1 93309215 93309216 - A FAM69A Frame_Shift_Ins p.V338Cfs*7 0.12 TCGA-EW-A6SB-01 1 99775095 99775095 A G LPPR4 3'UTR 0.05 TCGA-EW-A6SB-01 20 35219408 35219408 C T TGIF2 Silent p.R96R 0.09 TCGA-EW-A6SB-01 21 36259200 36259200 G T RUNX1 Missense_Mutation p.F97L 0.26 tolerated(0.13) probably_damaging(0.998) TCGA-EW-A6SB-01 21 36259201 36259201 A T RUNX1 Missense_Mutation p.F97Y 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-EW-A6SB-01 21 47548888 47548888 C G COL6A2 Intron 0.11 TCGA-EW-A6SB-01 22 38328811 38328811 G A MICALL1 Missense_Mutation p.R717H 0.21 tolerated(0.16) benign(0.009) TCGA-EW-A6SB-01 2 11758438 11758438 C T GREB1 Missense_Mutation p.S1146L 0.11 tolerated(0.14) benign(0.002) TCGA-EW-A6SB-01 2 141680690 141680690 C T LRP1B Missense_Mutation p.G1055R 0.17 probably_damaging(0.998) TCGA-EW-A6SB-01 2 177055412 177055412 T C HOXD1 3'UTR 0.22 TCGA-EW-A6SB-01 2 197583247 197583251 AAGTA - CCDC150 Frame_Shift_Del p.S630Rfs*11 0.12 TCGA-EW-A6SB-01 2 65539907 65539907 A G SPRED2 3'UTR 0.18 TCGA-EW-A6SB-01 2 86393654 86393654 T C IMMT Missense_Mutation p.K257E 0.10 tolerated(0.08) possibly_damaging(0.7) TCGA-EW-A6SB-01 2 86709168 86709168 C T KDM3A Silent p.P876P 0.20 TCGA-EW-A6SB-01 2 90121950 90121950 C G IGKV1D-17 Silent p.A56A 0.12 TCGA-EW-A6SB-01 3 119911895 119911895 G T GPR156 Missense_Mutation p.T122K 0.17 deleterious(0) benign(0.131) TCGA-EW-A6SB-01 3 149468562 149468562 A G COMMD2 Missense_Mutation p.L102P 0.25 deleterious(0.01) probably_damaging(0.936) TCGA-EW-A6SB-01 3 3097894 3097894 C T CNTN4 Missense_Mutation p.S1024F 0.10 deleterious(0.03) unknown(0) TCGA-EW-A6SB-01 3 70017418 70017418 T C MITF 3'UTR 0.23 TCGA-EW-A6SB-01 4 130032988 130032988 T C C4orf33 3'UTR 0.09 TCGA-EW-A6SB-01 4 16164070 16164070 C T TAPT1 3'UTR 0.17 TCGA-EW-A6SB-01 5 13864742 13864742 G A DNAH5 Nonsense_Mutation p.R1454* 0.09 TCGA-EW-A6SB-01 6 107391395 107391395 C T BEND3 Missense_Mutation p.D334N 0.15 deleterious(0.05) probably_damaging(0.976) TCGA-EW-A6SB-01 6 167344566 167344566 A T RNASET2 Missense_Mutation p.V178E 0.11 deleterious(0) possibly_damaging(0.838) TCGA-EW-A6SB-01 6 26197173 26197173 C A HIST1H3D Silent p.V102V 0.06 TCGA-EW-A6SB-01 6 38883062 38883062 T A DNAH8 Missense_Mutation p.I3133N 0.10 probably_damaging(0.992) TCGA-EW-A6SB-01 6 55142302 55142302 T C HCRTR2 Missense_Mutation p.I296T 0.09 deleterious(0.01) benign(0.219) TCGA-EW-A6SB-01 6 74104705 74104705 C G DDX43 Missense_Mutation p.A26G 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.84) TCGA-EW-A6SB-01 7 102604004 102604004 G A FBXL13 Nonsense_Mutation p.R234* 0.06 TCGA-EW-A6SB-01 7 103368566 103368566 G A RELN Nonsense_Mutation p.R249* 0.34 TCGA-EW-A6SB-01 7 56087407 56087407 C A PSPH Missense_Mutation p.G54V 0.32 deleterious(0) probably_damaging(0.984) TCGA-EW-A6SB-01 7 72738430 72738430 T A TRIM50 Missense_Mutation p.H119L 0.04 tolerated(0.65) benign(0.122) TCGA-EW-A6SB-01 7 93073022 93073022 G T CALCR Nonsense_Mutation p.C266* 0.25 TCGA-EW-A6SB-01 8 135612554 135612554 A C ZFAT Intron 0.14 TCGA-EW-A6SB-01 8 141799583 141799583 G C PTK2 Silent p.V389V 0.12 TCGA-EW-A6SB-01 8 145755913 145755913 G A ARHGAP39 Nonsense_Mutation p.Q1080* 0.13 TCGA-EW-A6SB-01 8 67361180 67361180 G A ADHFE1 Missense_Mutation p.A237T 0.09 tolerated(0.08) possibly_damaging(0.721) TCGA-EW-A6SB-01 8 86019547 86019547 C T LRRCC1 Missense_Mutation p.A6V 0.17 tolerated_low_confidence(0.3) unknown(0) TCGA-EW-A6SB-01 9 130213416 130213416 T G RPL12 Intron 0.17 TCGA-EW-A6SB-01 9 139750815 139750815 C T MAMDC4 Intron 0.10 TCGA-EW-A6SB-01 9 140130455 140130455 C A SLC34A3 Missense_Mutation p.L463M 0.14 deleterious(0.03) possibly_damaging(0.651) TCGA-EW-A6SB-01 X 70837425 70837425 C T CXCR3 Missense_Mutation p.G13E 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EW-A6SC-01 10 112361739 112361739 G A SMC3 Missense_Mutation p.E970K 0.24 deleterious(0.05) benign(0.173) TCGA-EW-A6SC-01 10 93041335 93041335 A G PCGF5 3'UTR 0.27 TCGA-EW-A6SC-01 11 55872736 55872736 G A OR8H2 Missense_Mutation p.S73N 0.24 tolerated(0.09) benign(0.027) TCGA-EW-A6SC-01 11 84996294 84996294 C T DLG2 Silent p.P52P 0.13 TCGA-EW-A6SC-01 12 133158037 133158037 C T FBRSL1 Missense_Mutation p.P659L 0.26 deleterious(0) possibly_damaging(0.894) TCGA-EW-A6SC-01 13 46538100 46538100 C T ZC3H13 Missense_Mutation p.A1518T 0.07 unknown(0) TCGA-EW-A6SC-01 13 70275627 70275627 G A KLHL1 3'UTR 0.31 TCGA-EW-A6SC-01 14 31583498 31583498 T C HECTD1 Silent p.G1889G 0.25 TCGA-EW-A6SC-01 15 23811596 23811596 G A MKRN3 Missense_Mutation p.A223T 0.33 tolerated(0.13) possibly_damaging(0.703) TCGA-EW-A6SC-01 16 56717960 56717960 G A MT1X Silent p.%3D 0.64 TCGA-EW-A6SC-01 16 68842677 68842677 T - CDH1 Frame_Shift_Del p.F205Lfs*10 0.27 TCGA-EW-A6SC-01 18 34298575 34298575 G A FHOD3 Missense_Mutation p.R930H 0.28 tolerated(0.57) benign(0.005) TCGA-EW-A6SC-01 19 6926438 6926438 T C EMR1 Missense_Mutation p.M683T 0.41 deleterious(0.03) possibly_damaging(0.893) TCGA-EW-A6SC-01 1 16385073 16385073 C T FAM131C Silent p.P234P 0.16 TCGA-EW-A6SC-01 1 85331624 85331624 T C LPAR3 Silent p.K60K 0.29 TCGA-EW-A6SC-01 21 38887193 38887193 G A DYRK1A 3'Flank 0.16 TCGA-EW-A6SC-01 22 16448839 16448839 A G OR11H1 Silent p.S322S 0.33 TCGA-EW-A6SC-01 2 108881711 108881711 G A SULT1C3 Nonsense_Mutation p.W273* 0.14 TCGA-EW-A6SC-01 2 111144548 111144548 C T LINC01106 5'Flank 0.48 TCGA-EW-A6SC-01 2 114351787 114351787 C T WASH2P RNA 0.09 TCGA-EW-A6SC-01 2 128620830 128620830 C T AMMECR1L 3'UTR 0.37 TCGA-EW-A6SC-01 2 208598746 208598746 C T CCNYL1 Intron 0.07 TCGA-EW-A6SC-01 2 211476996 211476996 G A CPS1 Silent p.T855T 0.24 TCGA-EW-A6SC-01 2 238244891 238244891 G C COL6A3 Missense_Mutation p.A2951G 0.26 unknown(0) TCGA-EW-A6SC-01 3 150281320 150281320 C T EIF2A Missense_Mutation p.A104V 0.38 tolerated(0.2) benign(0.253) TCGA-EW-A6SC-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-EW-A6SC-01 4 6884562 6884562 A G KIAA0232 3'UTR 0.33 TCGA-EW-A6SC-01 4 72338654 72338654 C T SLC4A4 Missense_Mutation p.L624F 0.32 tolerated(0.73) benign(0.003) TCGA-EW-A6SC-01 5 179004076 179004076 G A RUFY1 Missense_Mutation p.V277I 0.31 tolerated(0.05) possibly_damaging(0.821) TCGA-EW-A6SC-01 6 168445506 168445506 G A KIF25 Splice_Site p.X329_splice 0.20 TCGA-EW-A6SC-01 6 26216643 26216643 C A HIST1H2BG Nonsense_Mutation p.E77* 0.24 TCGA-EW-A6SC-01 6 27791988 27791988 G T HIST1H4J Missense_Mutation p.G29V 0.25 deleterious(0) probably_damaging(0.999) TCGA-EW-A6SC-01 6 27799220 27799220 C A HIST1H4K Missense_Mutation p.G29V 0.09 deleterious(0) probably_damaging(0.999) TCGA-EW-A6SC-01 7 5972435 5972435 G A RSPH10B Silent p.I737I 0.24 TCGA-EW-A6SC-01 8 11617457 11617457 T C GATA4 3'UTR 0.19 TCGA-EW-A6SC-01 9 19786305 19786305 G T SLC24A2 Missense_Mutation p.P187Q 0.38 deleterious(0) probably_damaging(1) TCGA-EW-A6SC-01 9 90582532 90582532 G A CDK20 Missense_Mutation p.H296Y 0.21 tolerated(0.07) possibly_damaging(0.514) TCGA-EW-A6SC-01 X 15721331 15721331 C T CA5BP1 RNA 0.24 TCGA-EW-A6SC-01 X 34148133 34148133 G A FAM47A Nonsense_Mutation p.Q755* 0.29 TCGA-EW-A6SC-01 X 73062261 73062261 G T XIST RNA 0.26 TCGA-EW-A6SD-01 10 118386375 118386375 A G PNLIPRP2 Missense_Mutation p.K111E 0.07 tolerated(1) benign(0.046) TCGA-EW-A6SD-01 10 1229050 1229050 C T ADARB2 3'UTR 0.10 TCGA-EW-A6SD-01 10 16962018 16962018 C T CUBN Silent p.P2255P 0.09 TCGA-EW-A6SD-01 10 74322751 74322751 C G MICU1 Missense_Mutation p.D78H 0.10 deleterious(0.03) benign(0.001) TCGA-EW-A6SD-01 11 128330253 128330253 C T ETS1 3'UTR 0.56 TCGA-EW-A6SD-01 11 3663117 3663117 G C ART5 5'UTR 0.51 TCGA-EW-A6SD-01 11 67185017 67185017 T C CARNS1 Missense_Mutation p.L48P 0.26 tolerated(0.15) benign(0.429) TCGA-EW-A6SD-01 11 73711582 73711582 C G UCP3 3'UTR 0.23 TCGA-EW-A6SD-01 11 73712184 73712184 C T UCP3 3'UTR 0.42 TCGA-EW-A6SD-01 11 95503977 95503977 G A FAM76B 3'UTR 0.04 TCGA-EW-A6SD-01 12 80328782 80328782 G T PPP1R12A 5'UTR 0.58 TCGA-EW-A6SD-01 13 103281854 103281854 G A TPP2 Missense_Mutation p.E347K 0.25 deleterious(0.01) possibly_damaging(0.688) TCGA-EW-A6SD-01 14 103969753 103969753 G T MARK3 3'UTR 0.29 TCGA-EW-A6SD-01 14 105412023 105412023 C A AHNAK2 Silent p.L3255L 0.16 TCGA-EW-A6SD-01 14 36097001 36097016 GTACTTTCACTGTAAT - RALGAPA1 Frame_Shift_Del p.H1540Lfs*18 0.24 TCGA-EW-A6SD-01 15 40698073 40698073 G C IVD Missense_Mutation p.W18C 0.09 tolerated_low_confidence(0.15) possibly_damaging(0.784) TCGA-EW-A6SD-01 15 56680701 56680701 C A TEX9 Missense_Mutation p.L99I 0.19 tolerated(0.34) benign(0.099) TCGA-EW-A6SD-01 16 15091681 15091681 G C PDXDC1 Missense_Mutation p.Q31H 0.14 deleterious(0.03) benign(0.008) TCGA-EW-A6SD-01 16 21730823 21730823 C G OTOA Missense_Mutation p.Q602E 0.31 deleterious(0.03) possibly_damaging(0.517) TCGA-EW-A6SD-01 16 3543937 3543937 G A C16orf90 Missense_Mutation p.P151S 0.36 tolerated_low_confidence(0.15) benign(0.046) TCGA-EW-A6SD-01 16 58318574 58318574 G A PRSS54 Missense_Mutation p.L192F 0.14 deleterious(0.03) possibly_damaging(0.486) TCGA-EW-A6SD-01 17 27371979 27371979 C T PIPOX Nonsense_Mutation p.Q73* 0.16 TCGA-EW-A6SD-01 17 30693696 30693696 G A ZNF207 Missense_Mutation p.V281I 0.08 tolerated(0.31) unknown(0) TCGA-EW-A6SD-01 17 40459482 40459482 G C STAT5A Missense_Mutation p.L581F 0.40 tolerated(0.16) benign(0.085) TCGA-EW-A6SD-01 17 60770797 60770797 C T MRC2 3'UTR 0.33 TCGA-EW-A6SD-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.55 deleterious(0) probably_damaging(0.982) TCGA-EW-A6SD-01 18 7036007 7036007 C T LAMA1 Silent p.S606S 0.26 TCGA-EW-A6SD-01 19 17086827 17086827 C T CPAMD8 Silent p.R678R 0.11 TCGA-EW-A6SD-01 19 32930681 32930681 G T DPY19L3 Splice_Site p.X241_splice 0.26 TCGA-EW-A6SD-01 1 1647916 1647916 C A CDK11A Silent p.G119G 0.45 TCGA-EW-A6SD-01 1 211487207 211487207 A T RCOR3 3'UTR 0.38 TCGA-EW-A6SD-01 1 212126006 212126006 C T INTS7 Missense_Mutation p.D741N 0.25 tolerated(0.1) benign(0.06) TCGA-EW-A6SD-01 1 22168759 22168759 C T HSPG2 Missense_Mutation p.V3009I 0.30 benign(0.074) TCGA-EW-A6SD-01 1 36031078 36031078 C G NCDN Silent p.L668L 0.21 TCGA-EW-A6SD-01 20 18492882 18492882 C T SEC23B Nonsense_Mutation p.R79* 0.16 TCGA-EW-A6SD-01 20 60965292 60965292 G A CABLES2 3'UTR 0.35 TCGA-EW-A6SD-01 21 45655406 45655406 G A ICOSLG Missense_Mutation p.P149L 0.50 deleterious(0) benign(0.15) TCGA-EW-A6SD-01 22 42393902 42393902 G C SEPT3 3'UTR 0.62 TCGA-EW-A6SD-01 2 107460386 107460386 T G ST6GAL2 Silent p.I16I 0.18 TCGA-EW-A6SD-01 2 133547702 133547702 C T NCKAP5 Missense_Mutation p.R329Q 0.11 deleterious(0.04) benign(0.194) TCGA-EW-A6SD-01 2 137852509 137852509 C A THSD7B Silent p.T339T 0.12 TCGA-EW-A6SD-01 2 191900948 191900948 C G STAT4 Silent p.S504S 0.15 TCGA-EW-A6SD-01 2 210558314 210558314 C G MAP2 Missense_Mutation p.Q474E 0.21 tolerated_low_confidence(0.07) benign(0.1) TCGA-EW-A6SD-01 3 108474626 108474626 C T RETNLB Silent p.%3D 0.16 TCGA-EW-A6SD-01 3 196022907 196022907 A G TCTEX1D2 Silent p.T117T 0.11 TCGA-EW-A6SD-01 3 41266495 41266495 A G CTNNB1 Missense_Mutation p.M98V 0.38 tolerated(0.1) benign(0.045) TCGA-EW-A6SD-01 3 42956686 42956686 A G ZNF662 Missense_Mutation p.H400R 0.34 tolerated(0.75) benign(0.178) TCGA-EW-A6SD-01 4 140297617 140297618 CT - NAA15 Frame_Shift_Del p.F683* 0.31 TCGA-EW-A6SD-01 5 79852975 79852975 T C ANKRD34B 3'UTR 0.51 TCGA-EW-A6SD-01 6 17608467 17608468 - T FAM8A1 Frame_Shift_Ins p.A384Cfs*11 0.12 TCGA-EW-A6SD-01 6 38875811 38875811 G A DNAH8 Missense_Mutation p.R2926H 0.53 probably_damaging(0.996) TCGA-EW-A6SD-01 6 66205032 66205032 G C EYS Missense_Mutation p.S91C 0.50 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EW-A6SD-01 6 74528184 74528184 G A CD109 Missense_Mutation p.E1329K 0.27 deleterious(0.01) benign(0.092) TCGA-EW-A6SD-01 7 133884063 133884063 G C LRGUK Missense_Mutation p.R546T 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-EW-A6SD-01 7 55755476 55755476 G A RNU6-389P 3'Flank 0.15 TCGA-EW-A6SD-01 7 98574684 98574684 C T TRRAP Silent p.H2783H 0.12 TCGA-EW-A6SD-01 8 142226035 142226035 C T SLC45A4 Silent p.L537L 0.34 TCGA-EW-A6SD-01 8 145556328 145556328 G T SCRT1 3'UTR 0.30 TCGA-EW-A6SD-01 9 113208191 113208191 C T SVEP1 Missense_Mutation p.M1463I 0.35 benign(0) TCGA-EW-A6SD-01 9 114159334 114159334 C A KIAA0368 Nonsense_Mutation p.E1096* 0.34 TCGA-EW-A6SD-01 9 139743815 139743815 G C PHPT1 5'UTR 0.36 TCGA-EW-A6SD-01 9 19379616 19379616 G C RPS6 Missense_Mutation p.L3V 0.56 deleterious(0.03) benign(0.285) TCGA-EW-A6SD-01 X 112021646 112021646 C T AMOT 3'UTR 0.17 TCGA-EW-A6SD-01 X 120182406 120182406 A T GLUD2 Missense_Mutation p.M290L 0.16 tolerated(0.08) benign(0.006) TCGA-EW-A6SD-01 X 123839028 123839028 A G TENM1 Missense_Mutation p.S284P 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EW-A6SD-01 X 144337235 144337235 G A SPANXN1 Silent p.L40L 0.19 TCGA-EW-A6SD-01 X 150156558 150156558 G A HMGB3 3'UTR 0.12 TCGA-EW-A6SD-01 X 23353188 23353188 G C PTCHD1 Missense_Mutation p.E66Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-EW-A6SD-01 X 48681786 48681786 A T HDAC6 Missense_Mutation p.T993S 0.21 tolerated(0.64) benign(0) TCGA-EW-A6SD-01 X 53114943 53114943 G A TSPYL2 Missense_Mutation p.E457K 0.16 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EW-A6SD-01 X 70316230 70316230 G A FOXO4 5'UTR 0.50 TCGA-GI-A2C8-01 10 116602860 116602860 C T FAM160B1 Nonsense_Mutation p.Q231* 0.12 TCGA-GI-A2C8-01 10 123258049 123258049 G C FGFR2 Missense_Mutation p.H545Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-GI-A2C8-01 10 50340195 50340195 A T FAM170B Missense_Mutation p.S105R 0.42 tolerated(0.1) probably_damaging(0.933) TCGA-GI-A2C8-01 10 50732291 50732291 C T ERCC6-PGBD3 Silent p.L395L 0.12 TCGA-GI-A2C8-01 11 129817174 129817174 C A PRDM10 Missense_Mutation p.R129I 0.19 tolerated_low_confidence(0.26) benign(0.034) TCGA-GI-A2C8-01 11 134104809 134104809 G C VPS26B Missense_Mutation p.G81A 0.17 deleterious(0.02) possibly_damaging(0.559) TCGA-GI-A2C8-01 11 134104810 134104810 G T VPS26B Silent p.G81G 0.17 TCGA-GI-A2C8-01 11 14899627 14899627 G A CYP2R1 3'UTR 0.16 TCGA-GI-A2C8-01 11 14899628 14899628 C A CYP2R1 3'UTR 0.15 TCGA-GI-A2C8-01 11 34111739 34111739 C T CAPRIN1 Missense_Mutation p.S436L 0.09 deleterious(0.01) possibly_damaging(0.46) TCGA-GI-A2C8-01 11 34111768 34111768 C T CAPRIN1 Nonsense_Mutation p.Q446* 0.09 TCGA-GI-A2C8-01 11 36680732 36680732 A G C11orf74 Missense_Mutation p.D221G 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GI-A2C8-01 11 4470851 4470851 A T OR52K2 Silent p.I94I 0.29 TCGA-GI-A2C8-01 11 47810145 47810145 A T NUP160 Missense_Mutation p.I1177N 0.09 deleterious(0) probably_damaging(0.99) TCGA-GI-A2C8-01 11 62561771 62561771 T C NXF1 Silent p.A573A 0.21 TCGA-GI-A2C8-01 11 67375917 67375917 T G NDUFV1 Missense_Mutation p.I41M 0.21 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-GI-A2C8-01 12 12300444 12300444 G A LRP6 Missense_Mutation p.R1085W 0.14 deleterious(0) probably_damaging(0.997) TCGA-GI-A2C8-01 12 14849213 14849213 G A GUCY2C Missense_Mutation p.A57V 0.18 tolerated(0.14) benign(0.045) TCGA-GI-A2C8-01 12 57573620 57573620 G C LRP1 Missense_Mutation p.W1674C 0.40 probably_damaging(0.999) TCGA-GI-A2C8-01 12 65720650 65720650 C G MSRB3 Missense_Mutation p.Q48E 0.09 tolerated(1) benign(0.01) TCGA-GI-A2C8-01 12 7651707 7651707 G A CD163 Missense_Mutation p.R179W 0.25 deleterious(0.01) possibly_damaging(0.67) TCGA-GI-A2C8-01 12 8212311 8212311 C A C3AR1 Silent p.V157V 0.20 TCGA-GI-A2C8-01 13 36348681 36348681 C A DCLK1 3'UTR 0.23 TCGA-GI-A2C8-01 13 42860451 42860451 A T AKAP11 5'UTR 0.19 TCGA-GI-A2C8-01 13 46619585 46619585 T G ZC3H13 Missense_Mutation p.T20P 0.31 unknown(0) TCGA-GI-A2C8-01 13 98671984 98671984 T C IPO5 Missense_Mutation p.W1014R 0.41 deleterious(0) probably_damaging(0.997) TCGA-GI-A2C8-01 14 21024763 21024763 C T RNASE9 Missense_Mutation p.E161K 0.33 tolerated(0.15) benign(0.02) TCGA-GI-A2C8-01 14 22005128 22005128 C G SALL2 5'UTR 0.24 TCGA-GI-A2C8-01 14 23564377 23564377 C A ACIN1 Missense_Mutation p.R40L 0.22 probably_damaging(0.968) TCGA-GI-A2C8-01 14 31598424 31598424 T G HECTD1 Missense_Mutation p.S1385R 0.22 tolerated(0.24) possibly_damaging(0.651) TCGA-GI-A2C8-01 14 69969563 69969563 C G PLEKHD1 Silent p.T174T 0.14 TCGA-GI-A2C8-01 14 73198577 73198577 G A DPF3 Missense_Mutation p.R123C 0.17 tolerated(0.2) probably_damaging(0.942) TCGA-GI-A2C8-01 14 92792293 92792293 C A SLC24A4 Missense_Mutation p.T71K 0.09 tolerated(0.08) benign(0.002) TCGA-GI-A2C8-01 15 22368707 22368707 T A OR4M2 Silent p.L44L 0.06 TCGA-GI-A2C8-01 15 33955918 33955918 C T RYR3 Missense_Mutation p.R1867C 0.42 probably_damaging(0.997) TCGA-GI-A2C8-01 15 63866266 63866266 C T USP3 Silent p.V310V 0.27 TCGA-GI-A2C8-01 15 63866545 63866545 C T USP3 Nonsense_Mutation p.Q347* 0.27 TCGA-GI-A2C8-01 15 86311723 86311723 A C KLHL25 Missense_Mutation p.V440G 0.35 deleterious(0) probably_damaging(0.998) TCGA-GI-A2C8-01 16 1129135 1129135 C T SSTR5 Silent p.Y89Y 0.33 TCGA-GI-A2C8-01 16 1263791 1263791 C T CACNA1H Missense_Mutation p.R1597W 0.09 deleterious(0.02) probably_damaging(0.977) TCGA-GI-A2C8-01 16 3613870 3613870 G C NLRC3 Silent p.P403P 0.26 TCGA-GI-A2C8-01 16 68847304 68847304 G T CDH1 Missense_Mutation p.W409L 0.35 deleterious(0) probably_damaging(1) TCGA-GI-A2C8-01 16 74946204 74946204 G C WDR59 Silent p.V427V 0.21 TCGA-GI-A2C8-01 17 31340989 31340989 G C ASIC2 Silent p.A562A 0.11 TCGA-GI-A2C8-01 17 39622349 39622349 G T KRT32 Missense_Mutation p.A183D 0.31 deleterious(0) benign(0.237) TCGA-GI-A2C8-01 17 60779032 60779032 G T MARCH10 3'UTR 0.11 TCGA-GI-A2C8-01 17 62080895 62080895 G T C17orf72 3'Flank 0.22 TCGA-GI-A2C8-01 17 67081246 67081246 C T ABCA6 Silent p.L1369L 0.14 TCGA-GI-A2C8-01 17 76567383 76567383 G A DNAH17 Silent p.N270N 0.31 TCGA-GI-A2C8-01 19 14805918 14805918 G C ZNF333 Missense_Mutation p.D34H 0.20 deleterious(0) probably_damaging(0.961) TCGA-GI-A2C8-01 19 14829928 14829928 C T ZNF333 Nonsense_Mutation p.R597* 0.27 TCGA-GI-A2C8-01 19 21365513 21365513 A G ZNF431 Missense_Mutation p.K136R 0.15 tolerated(0.1) possibly_damaging(0.516) TCGA-GI-A2C8-01 19 375832 375832 G A THEG Missense_Mutation p.R47C 0.14 tolerated_low_confidence(0.17) benign(0) TCGA-GI-A2C8-01 19 50193508 50193508 C G ADM5 Missense_Mutation p.P74A 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-GI-A2C8-01 19 52579393 52579393 T G ZNF841 Missense_Mutation p.M59L 0.11 tolerated(0.44) benign(0.008) TCGA-GI-A2C8-01 1 11119330 11119330 C G SRM Missense_Mutation p.Q80H 0.39 deleterious(0.05) possibly_damaging(0.794) TCGA-GI-A2C8-01 1 144863319 144863319 T A PDE4DIP Missense_Mutation p.K2028N 0.06 deleterious(0.03) benign(0.05) TCGA-GI-A2C8-01 1 149885164 149885164 C A SV2A Missense_Mutation p.G77C 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-GI-A2C8-01 1 151377893 151377893 C G POGZ Missense_Mutation p.E1206D 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-GI-A2C8-01 1 152681654 152681654 C T LCE4A Missense_Mutation p.P35S 0.17 deleterious_low_confidence(0) unknown(0) TCGA-GI-A2C8-01 1 15702190 15702190 G C FHAD1 Silent p.P436P 0.35 TCGA-GI-A2C8-01 1 175299275 175299275 C T TNR Missense_Mutation p.R1243K 0.10 tolerated(1) benign(0.001) TCGA-GI-A2C8-01 1 186026400 186026400 T C HMCN1 Silent p.P2393P 0.11 TCGA-GI-A2C8-01 1 197102583 197102583 C T ASPM Silent p.L772L 0.07 TCGA-GI-A2C8-01 1 204506608 204506608 A T MDM4 Missense_Mutation p.S132C 0.10 deleterious(0.03) possibly_damaging(0.882) TCGA-GI-A2C8-01 1 220752703 220752703 C G MARK1 Missense_Mutation p.S20C 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-GI-A2C8-01 1 22084163 22084163 C G USP48 Missense_Mutation p.R83T 0.16 deleterious(0) probably_damaging(0.996) TCGA-GI-A2C8-01 1 228495195 228495195 A T OBSCN Silent p.T5100T 0.21 TCGA-GI-A2C8-01 1 6188127 6188127 C T CHD5 Silent p.V1294V 0.38 TCGA-GI-A2C8-01 1 99157223 99157223 G C SNX7 Missense_Mutation p.D203H 0.20 tolerated(0.85) benign(0.274) TCGA-GI-A2C8-01 20 35269654 35269654 C T SLA2 Missense_Mutation p.E29K 0.09 tolerated(0.17) benign(0.055) TCGA-GI-A2C8-01 20 40118637 40118637 C G CHD6 Missense_Mutation p.E487D 0.26 deleterious(0) probably_damaging(0.999) TCGA-GI-A2C8-01 21 10996075 10996075 C G TPTE RNA 0.17 TCGA-GI-A2C8-01 21 35258721 35258721 C G ITSN1 Silent p.V1658V 0.22 TCGA-GI-A2C8-01 22 19052401 19052401 C A DGCR2 Missense_Mutation p.D170Y 0.22 deleterious(0) probably_damaging(0.926) TCGA-GI-A2C8-01 22 28397319 28397319 C A TTC28 Intron 0.25 TCGA-GI-A2C8-01 22 42177711 42177711 C T MEI1 Silent p.S983S 0.30 TCGA-GI-A2C8-01 2 11738098 11738098 C T GREB1 Missense_Mutation p.H716Y 0.21 deleterious(0) possibly_damaging(0.478) TCGA-GI-A2C8-01 2 160879365 160879365 C A PLA2R1 Missense_Mutation p.D369Y 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-GI-A2C8-01 2 167301290 167301290 A T SCN7A Silent p.L536L 0.11 TCGA-GI-A2C8-01 2 179442485 179442485 T C TTN Missense_Mutation p.K22890E 0.20 TCGA-GI-A2C8-01 2 179474059 179474059 G T TTN Missense_Mutation p.N17326K 0.28 TCGA-GI-A2C8-01 2 208865794 208865794 C A PLEKHM3 Missense_Mutation p.L190F 0.43 tolerated(0.7) benign(0.122) TCGA-GI-A2C8-01 2 219873785 219873785 G C CCDC108 Missense_Mutation p.T1553S 0.34 deleterious(0.02) possibly_damaging(0.798) TCGA-GI-A2C8-01 2 225738767 225738767 G T DOCK10 Silent p.L401L 0.22 TCGA-GI-A2C8-01 2 232329160 232329160 G C NCL 5'UTR 0.25 TCGA-GI-A2C8-01 2 238006529 238006529 G C COPS8 3'UTR 0.25 TCGA-GI-A2C8-01 2 26693990 26693990 A C OTOF Missense_Mutation p.V1298G 0.17 tolerated(0.16) benign(0.004) TCGA-GI-A2C8-01 2 55795499 55795499 C T SMEK2 Missense_Mutation p.C589Y 0.25 deleterious(0) possibly_damaging(0.629) TCGA-GI-A2C8-01 2 71361148 71361148 C A MPHOSPH10 Missense_Mutation p.T280K 0.16 tolerated(0.86) benign(0.102) TCGA-GI-A2C8-01 2 74883757 74883757 C T SEMA4F Missense_Mutation p.A81V 0.11 deleterious(0) possibly_damaging(0.755) TCGA-GI-A2C8-01 2 77746784 77746784 T A LRRTM4 Missense_Mutation p.N71Y 0.26 deleterious(0) probably_damaging(1) TCGA-GI-A2C8-01 2 85850804 85850804 G A USP39 Missense_Mutation p.V157I 0.16 deleterious(0.04) probably_damaging(0.955) TCGA-GI-A2C8-01 3 100373936 100373936 T A GPR128 Missense_Mutation p.L546H 0.16 deleterious(0) probably_damaging(0.989) TCGA-GI-A2C8-01 3 111319651 111319651 G T CD96 Missense_Mutation p.S342I 0.17 tolerated(0.29) benign(0.054) TCGA-GI-A2C8-01 3 152880777 152880777 C T RAP2B Nonsense_Mutation p.Q99* 0.30 TCGA-GI-A2C8-01 3 186459878 186459878 G A KNG1 Missense_Mutation p.D565N 0.13 tolerated(0.09) benign(0.191) TCGA-GI-A2C8-01 3 57419473 57419473 G A DNAH12 Missense_Mutation p.H1557Y 0.19 deleterious(0.02) benign(0) TCGA-GI-A2C8-01 3 97167503 97167503 A C EPHA6 Missense_Mutation p.H608P 0.18 deleterious(0.01) possibly_damaging(0.735) TCGA-GI-A2C8-01 4 151749586 151749586 C T LRBA Silent p.E1639E 0.35 TCGA-GI-A2C8-01 4 169317267 169317267 T A DDX60L Missense_Mutation p.K1167I 0.13 tolerated(0.16) benign(0.374) TCGA-GI-A2C8-01 4 187628565 187628565 C T FAT1 Missense_Mutation p.R806H 0.27 benign(0.012) TCGA-GI-A2C8-01 4 88029400 88029400 A G AFF1 Missense_Mutation p.D489G 0.18 tolerated(0.13) unknown(0) TCGA-GI-A2C8-01 5 129040064 129040064 C T ADAMTS19 Nonsense_Mutation p.R1092* 0.28 TCGA-GI-A2C8-01 5 140710475 140710475 T C PCDHGA1 Missense_Mutation p.F75S 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-GI-A2C8-01 5 156957818 156957818 A G ADAM19 Missense_Mutation p.I135T 0.18 deleterious(0) benign(0.012) TCGA-GI-A2C8-01 5 178552030 178552030 G A ADAMTS2 Missense_Mutation p.R968W 0.24 deleterious(0) probably_damaging(1) TCGA-GI-A2C8-01 5 180429676 180429676 G A BTNL3 Silent p.T226T 0.16 TCGA-GI-A2C8-01 5 31302229 31302229 T G CDH6 Missense_Mutation p.F275V 0.18 tolerated(0.08) benign(0.372) TCGA-GI-A2C8-01 5 55248110 55248110 G C IL6ST Missense_Mutation p.P507R 0.23 tolerated(0.11) benign(0.058) TCGA-GI-A2C8-01 5 74640149 74640149 A G HMGCR Silent p.T119T 0.22 TCGA-GI-A2C8-01 5 94859454 94859454 C A TTC37 Missense_Mutation p.A513S 0.11 deleterious(0.05) possibly_damaging(0.831) TCGA-GI-A2C8-01 6 105581324 105581324 C A BVES Silent p.L43L 0.20 TCGA-GI-A2C8-01 6 117632212 117632212 G C ROS1 Silent p.V2068V 0.14 TCGA-GI-A2C8-01 6 132618423 132618423 C G MOXD1 Missense_Mutation p.E571Q 0.15 tolerated(0.12) benign(0.01) TCGA-GI-A2C8-01 6 147122985 147122985 G A ADGB Silent p.L1552L 0.27 TCGA-GI-A2C8-01 6 25600888 25600888 C T LRRC16A Missense_Mutation p.R1156W 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.768) TCGA-GI-A2C8-01 7 107572731 107572731 C T LAMB1 Missense_Mutation p.G1427E 0.11 deleterious(0) probably_damaging(1) TCGA-GI-A2C8-01 7 112407631 112407631 A T TMEM168 Missense_Mutation p.I572K 0.10 tolerated(0.93) benign(0) TCGA-GI-A2C8-01 7 150910955 150910955 C A ABCF2 Intron 0.38 TCGA-GI-A2C8-01 7 151071305 151071305 C T NUB1 Silent p.S481S 0.39 TCGA-GI-A2C8-01 7 16744257 16744257 G T BZW2 Missense_Mutation p.M398I 0.19 deleterious(0.03) possibly_damaging(0.786) TCGA-GI-A2C8-01 7 21775366 21775366 A G DNAH11 Missense_Mutation p.T2524A 0.13 probably_damaging(0.94) TCGA-GI-A2C8-01 7 23793941 23793941 G T STK31 Missense_Mutation p.D381Y 0.18 deleterious(0) benign(0.014) TCGA-GI-A2C8-01 7 43484164 43484164 G T HECW1 Missense_Mutation p.G465C 0.69 tolerated_low_confidence(0.05) benign(0.002) TCGA-GI-A2C8-01 7 6661429 6661429 G T ZNF853 Missense_Mutation p.Q269H 0.17 deleterious_low_confidence(0) unknown(0) TCGA-GI-A2C8-01 7 72849811 72849811 G A FZD9 Missense_Mutation p.G492R 0.21 tolerated(0.25) benign(0.008) TCGA-GI-A2C8-01 7 77756528 77756528 A T MAGI2 Missense_Mutation p.Y1137N 0.18 tolerated(0.24) possibly_damaging(0.898) TCGA-GI-A2C8-01 7 80456754 80456754 C G SEMA3C Missense_Mutation p.G105A 0.13 deleterious(0) probably_damaging(0.998) TCGA-GI-A2C8-01 7 95222124 95222124 C A PDK4 Missense_Mutation p.L159F 0.10 deleterious(0) probably_damaging(0.999) TCGA-GI-A2C8-01 8 10285774 10285774 C T MSRA Silent p.C220C 0.25 TCGA-GI-A2C8-01 8 113326283 113326283 T G CSMD3 Splice_Site p.X2517_splice 0.26 TCGA-GI-A2C8-01 8 125131850 125131850 G A FER1L6 Missense_Mutation p.R1798H 0.14 deleterious(0) probably_damaging(0.991) TCGA-GI-A2C8-01 8 143561149 143561149 G A BAI1 Missense_Mutation p.A608T 0.17 deleterious(0) possibly_damaging(0.798) TCGA-GI-A2C8-01 8 3200906 3200906 G T CSMD1 Missense_Mutation p.L1181M 0.16 benign(0.037) TCGA-GI-A2C8-01 8 63978530 63978530 C A TTPA Missense_Mutation p.G162V 0.14 deleterious(0) probably_damaging(0.999) TCGA-GI-A2C8-01 8 95504946 95504946 C A KIAA1429 Missense_Mutation p.G1581V 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-GI-A2C8-01 9 34657465 34657465 G A IL11RA Missense_Mutation p.G176E 0.30 tolerated(0.42) benign(0.041) TCGA-GI-A2C8-01 X 114426597 114426597 C G RBMXL3 Missense_Mutation p.R865G 0.31 deleterious_low_confidence(0.01) benign(0.25) TCGA-GI-A2C8-01 X 122319694 122319694 C A GRIA3 Missense_Mutation p.F40L 0.20 deleterious(0) probably_damaging(0.991) TCGA-GI-A2C8-01 X 135767916 135767916 C G ARHGEF6 Missense_Mutation p.A438P 0.18 deleterious(0.02) benign(0.124) TCGA-GI-A2C8-01 X 153626619 153626619 G C RPL10 5'UTR 0.40 TCGA-GI-A2C8-01 X 18221806 18221806 G C BEND2 Missense_Mutation p.A241G 0.40 tolerated(0.14) benign(0.021) TCGA-GI-A2C8-01 X 18342120 18342120 T C SCML2 Missense_Mutation p.I86V 0.26 tolerated(1) benign(0.004) TCGA-GI-A2C8-01 X 18961899 18961899 C A PHKA2 Missense_Mutation p.D216Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-GI-A2C8-01 X 49074448 49074448 A T CACNA1F Missense_Mutation p.V993E 0.27 deleterious(0) possibly_damaging(0.788) TCGA-GI-A2C8-01 X 53966853 53966853 T A PHF8 Missense_Mutation p.T952S 0.17 tolerated(0.75) benign(0.01) TCGA-GI-A2C8-01 X 5821686 5821686 C T NLGN4X Missense_Mutation p.D345N 0.13 deleterious(0) probably_damaging(0.991) TCGA-GM-A2D9-01 10 101646291 101646291 G C DNMBP Silent p.L1128L 0.20 TCGA-GM-A2D9-01 10 103827284 103827284 G C HPS6 Missense_Mutation p.D685H 0.17 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 10 105141539 105141539 C T TAF5 Missense_Mutation p.S492L 0.12 deleterious(0) probably_damaging(0.997) TCGA-GM-A2D9-01 10 105658729 105658729 G C OBFC1 Missense_Mutation p.Q163E 0.31 deleterious(0) possibly_damaging(0.669) TCGA-GM-A2D9-01 10 106074757 106074757 C T ITPRIP Silent p.V351V 0.31 TCGA-GM-A2D9-01 10 108924008 108924008 G A SORCS1 Missense_Mutation p.R93W 0.30 deleterious_low_confidence(0.01) benign(0.057) TCGA-GM-A2D9-01 10 112838987 112838987 C T ADRA2A Silent p.L411L 0.25 TCGA-GM-A2D9-01 10 117093823 117093823 C G ATRNL1 Missense_Mutation p.I1023M 0.24 deleterious(0.02) benign(0.352) TCGA-GM-A2D9-01 10 129911795 129911795 C G MKI67 Missense_Mutation p.D518H 0.30 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 10 13228241 13228241 G A MCM10 Silent p.K393K 0.11 TCGA-GM-A2D9-01 10 18276578 18276578 C T SLC39A12 Nonsense_Mutation p.Q423* 0.21 TCGA-GM-A2D9-01 10 18690014 18690014 G A CACNB2 Intron 0.21 TCGA-GM-A2D9-01 10 28905140 28905140 C A WAC Missense_Mutation p.S532Y 0.37 tolerated(1) possibly_damaging(0.646) TCGA-GM-A2D9-01 10 32745230 32745230 C T CCDC7 Nonsense_Mutation p.Q142* 0.24 TCGA-GM-A2D9-01 10 48390700 48390700 C T RBP3 Missense_Mutation p.E60K 0.25 deleterious(0) possibly_damaging(0.824) TCGA-GM-A2D9-01 10 60560726 60560726 G C BICC1 Missense_Mutation p.Q645H 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-GM-A2D9-01 10 61828899 61828899 G C ANK3 Missense_Mutation p.P3914A 0.08 probably_damaging(0.986) TCGA-GM-A2D9-01 10 63810698 63810698 G A ARID5B Missense_Mutation p.R262K 0.11 deleterious(0.02) possibly_damaging(0.867) TCGA-GM-A2D9-01 10 72299360 72299360 C T PALD1 Missense_Mutation p.H584Y 0.19 deleterious(0.01) benign(0.008) TCGA-GM-A2D9-01 10 95129427 95129427 C G MYOF Missense_Mutation p.G855A 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-GM-A2D9-01 10 98118656 98118656 C T OPALIN 5'UTR 0.26 TCGA-GM-A2D9-01 11 108357153 108357153 C G KDELC2 Missense_Mutation p.E139Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-GM-A2D9-01 11 116692455 116692455 C T APOA4 Missense_Mutation p.E107K 0.13 tolerated(0.09) benign(0.049) TCGA-GM-A2D9-01 11 116827733 116827733 C T SIK3 Silent p.L49L 0.32 TCGA-GM-A2D9-01 11 1268315 1268315 C T MUC5B Missense_Mutation p.S3402F 0.09 unknown(0) TCGA-GM-A2D9-01 11 14989397 14989397 G A CALCA 3'Flank 0.19 TCGA-GM-A2D9-01 11 1580209 1580209 G A DUSP8 Silent p.L149L 0.25 TCGA-GM-A2D9-01 11 18014535 18014535 C T SERGEF Missense_Mutation p.E210K 0.11 deleterious(0.02) benign(0.269) TCGA-GM-A2D9-01 11 20139741 20139741 C T NAV2 Silent p.S2468S 0.27 TCGA-GM-A2D9-01 11 209670 209670 G A RIC8A Silent p.Q132Q 0.15 TCGA-GM-A2D9-01 11 2439589 2439589 C T TRPM5 Splice_Site p.X239_splice 0.53 TCGA-GM-A2D9-01 11 32975639 32975639 G A QSER1 Missense_Mutation p.E1343K 0.33 deleterious(0) benign(0.242) TCGA-GM-A2D9-01 11 3690577 3690577 C T CHRNA10 Missense_Mutation p.E71K 0.29 deleterious(0.02) probably_damaging(0.967) TCGA-GM-A2D9-01 11 4471052 4471052 C G OR52K2 Silent p.L161L 0.22 TCGA-GM-A2D9-01 11 47256321 47256321 G A DDB2 Missense_Mutation p.R239K 0.26 tolerated(0.99) benign(0.008) TCGA-GM-A2D9-01 11 47436898 47436898 C T SLC39A13 Missense_Mutation p.S367L 0.10 deleterious(0) possibly_damaging(0.876) TCGA-GM-A2D9-01 11 47834942 47834942 G A NUP160 Missense_Mutation p.S571L 0.15 deleterious(0.02) benign(0.044) TCGA-GM-A2D9-01 11 57089396 57089396 G C TNKS1BP1 5'UTR 0.43 TCGA-GM-A2D9-01 11 61580763 61580763 C T FADS1 Silent p.L146L 0.23 TCGA-GM-A2D9-01 11 61730178 61730178 G A BEST1 Missense_Mutation p.E458K 0.29 tolerated_low_confidence(0.37) benign(0.004) TCGA-GM-A2D9-01 11 62300602 62300602 C T AHNAK Silent p.L429L 0.32 TCGA-GM-A2D9-01 11 64453166 64453166 G C NRXN2 Missense_Mutation p.F368L 0.28 tolerated(0.06) benign(0.006) TCGA-GM-A2D9-01 11 64518811 64518811 G A PYGM Missense_Mutation p.S652L 0.21 deleterious(0) possibly_damaging(0.747) TCGA-GM-A2D9-01 11 6458804 6458804 G A HPX Missense_Mutation p.S190F 0.19 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 11 64627438 64627438 G A EHD1 Silent p.L291L 0.31 TCGA-GM-A2D9-01 11 66043605 66043605 G A RAB1B Missense_Mutation p.E168K 0.49 deleterious(0.05) benign(0.03) TCGA-GM-A2D9-01 11 68664121 68664121 C T MRPL21 Missense_Mutation p.M86I 0.13 tolerated(0.1) benign(0.004) TCGA-GM-A2D9-01 11 73789504 73789504 C T C2CD3 Missense_Mutation p.C1420Y 0.23 deleterious(0) probably_damaging(0.979) TCGA-GM-A2D9-01 11 76076976 76076976 C T PRKRIR Missense_Mutation p.E44K 0.25 tolerated(0.24) benign(0.087) TCGA-GM-A2D9-01 11 76891441 76891441 G C MYO7A Missense_Mutation p.E870Q 0.11 tolerated(0.33) possibly_damaging(0.618) TCGA-GM-A2D9-01 11 788616 788616 G C CEND1 5'UTR 0.30 TCGA-GM-A2D9-01 11 792901 792901 C T SLC25A22 Silent p.L127L 0.21 TCGA-GM-A2D9-01 11 7949369 7949369 G A OR10A6 Silent p.L281L 0.37 TCGA-GM-A2D9-01 11 8752555 8752555 G C ST5 Missense_Mutation p.F94L 0.14 tolerated_low_confidence(1) benign(0) TCGA-GM-A2D9-01 11 89449134 89449134 G A TRIM77 Missense_Mutation p.E280K 0.47 tolerated(0.18) possibly_damaging(0.858) TCGA-GM-A2D9-01 12 101504274 101504274 G A ANO4 Missense_Mutation p.D713N 0.08 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 12 109845625 109845625 C G MYO1H Silent p.L338L 0.47 TCGA-GM-A2D9-01 12 111087196 111087196 G C HVCN1 3'UTR 0.43 TCGA-GM-A2D9-01 12 113405314 113405314 C T OAS3 Silent p.F927F 0.16 TCGA-GM-A2D9-01 12 118841262 118841262 C T SUDS3 Missense_Mutation p.S248F 0.26 tolerated(0.06) benign(0.005) TCGA-GM-A2D9-01 12 12037418 12037418 C T ETV6 Missense_Mutation p.S350F 0.26 deleterious(0) probably_damaging(0.989) TCGA-GM-A2D9-01 12 121666825 121666825 C G P2RX4 Silent p.L285L 0.25 TCGA-GM-A2D9-01 12 122395093 122395093 C T WDR66 Missense_Mutation p.S550L 0.29 deleterious(0.02) benign(0.019) TCGA-GM-A2D9-01 12 123001887 123001887 C A RSRC2 Missense_Mutation p.K163N 0.20 tolerated_low_confidence(0.37) unknown(0) TCGA-GM-A2D9-01 12 123645757 123645757 C G MPHOSPH9 Missense_Mutation p.E951Q 0.16 tolerated(0.09) probably_damaging(0.999) TCGA-GM-A2D9-01 12 123957184 123957184 C T RILPL1 Silent p.Q371Q 0.24 TCGA-GM-A2D9-01 12 124816953 124816953 C T NCOR2 Silent p.L2272L 0.28 TCGA-GM-A2D9-01 12 130648501 130648501 C T FZD10 Silent p.A338A 0.11 TCGA-GM-A2D9-01 12 133281470 133281470 C T PXMP2 3'UTR 0.43 TCGA-GM-A2D9-01 12 14924045 14924045 G C HIST4H4 5'UTR 0.20 TCGA-GM-A2D9-01 12 19467793 19467793 G A PLEKHA5 Missense_Mutation p.E695K 0.21 tolerated(0.12) probably_damaging(0.922) TCGA-GM-A2D9-01 12 26592094 26592094 G C ITPR2 Silent p.L2203L 0.17 TCGA-GM-A2D9-01 12 3147214 3147214 G C TEAD4 Missense_Mutation p.M326I 0.32 tolerated(0.06) benign(0.157) TCGA-GM-A2D9-01 12 32137175 32137175 G A KIAA1551 Missense_Mutation p.D1096N 0.12 deleterious(0.05) benign(0.181) TCGA-GM-A2D9-01 12 48439129 48439129 C G SENP1 Missense_Mutation p.E637D 0.31 deleterious(0) probably_damaging(0.996) TCGA-GM-A2D9-01 12 49436961 49436961 C T KMT2D Missense_Mutation p.D1848N 0.23 benign(0.178) TCGA-GM-A2D9-01 12 49580117 49580117 G C TUBA1A Silent p.L117L 0.14 TCGA-GM-A2D9-01 12 50036605 50036605 G A FMNL3 3'UTR 0.10 TCGA-GM-A2D9-01 12 50757012 50757012 G C FAM186A Missense_Mutation p.L110V 0.18 deleterious(0.01) probably_damaging(0.953) TCGA-GM-A2D9-01 12 52377902 52377902 G A ACVR1B Missense_Mutation p.A352T 0.07 tolerated(0.32) probably_damaging(0.999) TCGA-GM-A2D9-01 12 53421804 53421804 G A EIF4B Missense_Mutation p.D271N 0.20 tolerated(0.1) possibly_damaging(0.539) TCGA-GM-A2D9-01 12 53901154 53901154 C G NPFF Intron 0.23 TCGA-GM-A2D9-01 12 54369062 54369062 G A HOXC11 Silent p.E260E 0.18 TCGA-GM-A2D9-01 12 56112992 56112992 C T BLOC1S1 Silent p.F112F 0.14 TCGA-GM-A2D9-01 12 56488300 56488300 C G ERBB3 Missense_Mutation p.Q607E 0.35 tolerated(0.59) benign(0.002) TCGA-GM-A2D9-01 12 57599457 57599457 G A LRP1 Missense_Mutation p.E3863K 0.09 benign(0.117) TCGA-GM-A2D9-01 12 66704108 66704108 C G HELB Missense_Mutation p.S467C 0.09 deleterious(0) probably_damaging(0.971) TCGA-GM-A2D9-01 12 6692483 6692483 C T CHD4 Nonsense_Mutation p.W1314* 0.13 TCGA-GM-A2D9-01 12 68050958 68050958 C G DYRK2 Missense_Mutation p.Q91E 0.10 tolerated_low_confidence(0.61) benign(0.006) TCGA-GM-A2D9-01 12 68689081 68689081 G C MDM1 Missense_Mutation p.L700V 0.13 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 12 68719139 68719139 C G MDM1 Intron 0.12 TCGA-GM-A2D9-01 12 68719379 68719379 C G MDM1 Intron 0.10 TCGA-GM-A2D9-01 12 69145932 69145932 G A SLC35E3 Missense_Mutation p.E212K 0.14 tolerated(0.22) benign(0.033) TCGA-GM-A2D9-01 12 69653949 69653949 G C CPSF6 Missense_Mutation p.E481Q 0.13 tolerated(0.08) possibly_damaging(0.784) TCGA-GM-A2D9-01 12 7527987 7527987 C T CD163L1 Missense_Mutation p.G964E 0.38 tolerated(0.36) possibly_damaging(0.689) TCGA-GM-A2D9-01 12 90004267 90004267 C T ATP2B1 Missense_Mutation p.D756N 0.08 deleterious(0.01) possibly_damaging(0.592) TCGA-GM-A2D9-01 12 93175878 93175878 C T EEA1 Missense_Mutation p.D1062N 0.31 deleterious(0) benign(0.14) TCGA-GM-A2D9-01 13 101735225 101735225 C T NALCN Missense_Mutation p.E1234K 0.39 tolerated(0.25) benign(0.003) TCGA-GM-A2D9-01 13 103299647 103299647 G A TPP2 Missense_Mutation p.D861N 0.23 tolerated(0.11) possibly_damaging(0.824) TCGA-GM-A2D9-01 13 42780232 42780232 C G DGKH Missense_Mutation p.P851A 0.17 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 13 45768346 45768346 G A KCTD4 Silent p.L119L 0.20 TCGA-GM-A2D9-01 13 52951842 52951842 C T THSD1 Missense_Mutation p.E755K 0.18 deleterious(0) possibly_damaging(0.896) TCGA-GM-A2D9-01 13 70514312 70514312 G C KLHL1 Missense_Mutation p.L292V 0.29 deleterious(0) probably_damaging(0.996) TCGA-GM-A2D9-01 13 76381640 76381640 C T LMO7 Silent p.L174L 0.36 TCGA-GM-A2D9-01 13 77581658 77581658 G C FBXL3 Missense_Mutation p.F303L 0.06 tolerated(0.35) probably_damaging(0.986) TCGA-GM-A2D9-01 13 77581750 77581750 G A FBXL3 Nonsense_Mutation p.Q273* 0.07 TCGA-GM-A2D9-01 13 77724978 77724978 G C MYCBP2 Missense_Mutation p.S2303C 0.05 benign(0.376) TCGA-GM-A2D9-01 13 88329126 88329126 G A SLITRK5 Missense_Mutation p.E495K 0.23 deleterious(0) possibly_damaging(0.773) TCGA-GM-A2D9-01 14 103412947 103412947 C G CDC42BPB Missense_Mutation p.K1202N 0.24 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 14 104578858 104578858 C A ASPG Intron 0.20 TCGA-GM-A2D9-01 14 105070949 105070949 C T TMEM179 Missense_Mutation p.E44K 0.40 tolerated(0.14) possibly_damaging(0.555) TCGA-GM-A2D9-01 14 105716582 105716582 C T BTBD6 Missense_Mutation p.S344F 0.33 tolerated(0.19) probably_damaging(0.913) TCGA-GM-A2D9-01 14 107179060 107179060 C A IGHV2-70 Silent p.L39L 0.19 TCGA-GM-A2D9-01 14 20813234 20813234 G A PARP2 Missense_Mutation p.D64N 0.29 tolerated(0.25) benign(0.002) TCGA-GM-A2D9-01 14 20813552 20813552 G A PARP2 Splice_Site p.X81_splice 0.12 TCGA-GM-A2D9-01 14 20850511 20850511 G C TEP1 Missense_Mutation p.S1382C 0.15 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 14 21463019 21463019 G C METTL17 Missense_Mutation p.E279Q 0.25 tolerated(0.11) benign(0.138) TCGA-GM-A2D9-01 14 21543031 21543031 G A ARHGEF40 Missense_Mutation p.R381K 0.21 tolerated(0.08) possibly_damaging(0.867) TCGA-GM-A2D9-01 14 21838537 21838537 C T SUPT16H Missense_Mutation p.M147I 0.27 tolerated(0.81) benign(0.001) TCGA-GM-A2D9-01 14 24026456 24026456 G A THTPA Missense_Mutation p.E164K 0.47 tolerated(0.23) benign(0.006) TCGA-GM-A2D9-01 14 24608639 24608639 G A EMC9 Nonsense_Mutation p.Q124* 0.20 TCGA-GM-A2D9-01 14 32559821 32559821 G C ARHGAP5 5'UTR 0.17 TCGA-GM-A2D9-01 14 32559878 32559878 G C ARHGAP5 Translation_Start_Site p.M1? 0.18 tolerated(0.22) benign(0.013) TCGA-GM-A2D9-01 14 33242956 33242956 G C AKAP6 Missense_Mutation p.D1149H 0.27 tolerated(0.09) possibly_damaging(0.77) TCGA-GM-A2D9-01 14 34985728 34985728 C T EAPP Missense_Mutation p.E216K 0.23 deleterious(0) probably_damaging(0.946) TCGA-GM-A2D9-01 14 35497306 35497306 C T SRP54 Missense_Mutation p.S447F 0.09 deleterious(0.02) possibly_damaging(0.854) TCGA-GM-A2D9-01 14 38061277 38061277 G A FOXA1 Missense_Mutation p.P238S 0.32 deleterious(0) probably_damaging(0.984) TCGA-GM-A2D9-01 14 38061278 38061278 C G FOXA1 Missense_Mutation p.K237N 0.32 deleterious(0) possibly_damaging(0.892) TCGA-GM-A2D9-01 14 38061279 38061279 T C FOXA1 Missense_Mutation p.K237R 0.27 deleterious(0) possibly_damaging(0.693) TCGA-GM-A2D9-01 14 38061280 38061280 T C FOXA1 Missense_Mutation p.K237E 0.27 deleterious(0) possibly_damaging(0.797) TCGA-GM-A2D9-01 14 50319473 50319473 G A NEMF 5'UTR 0.44 TCGA-GM-A2D9-01 14 50585035 50585035 A T SOS2 3'UTR 0.27 TCGA-GM-A2D9-01 14 60616170 60616170 G A DHRS7 Silent p.F291F 0.55 TCGA-GM-A2D9-01 14 62462702 62462702 G A SYT16 5'UTR 0.19 TCGA-GM-A2D9-01 14 68222790 68222790 C T ZFYVE26 Missense_Mutation p.E2221K 0.12 deleterious(0.02) possibly_damaging(0.574) TCGA-GM-A2D9-01 14 68229058 68229058 C T ZFYVE26 Silent p.G2077G 0.27 TCGA-GM-A2D9-01 14 68251851 68251851 C T ZFYVE26 Missense_Mutation p.D1150N 0.07 tolerated(0.33) benign(0.027) TCGA-GM-A2D9-01 14 73945340 73945340 G A HEATR4 Missense_Mutation p.P1018S 0.11 tolerated_low_confidence(0.46) benign(0) TCGA-GM-A2D9-01 14 74454814 74454814 C T ENTPD5 5'UTR 0.10 TCGA-GM-A2D9-01 14 75181618 75181618 G C FCF1 Missense_Mutation p.D39H 0.09 deleterious(0.01) benign(0.401) TCGA-GM-A2D9-01 14 89077251 89077251 G A ZC3H14 Missense_Mutation p.R724Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 14 90871206 90871206 C T CALM1 3'UTR 0.36 TCGA-GM-A2D9-01 14 92563069 92563069 C T ATXN3 Missense_Mutation p.M46I 0.05 tolerated(0.33) benign(0.002) TCGA-GM-A2D9-01 15 22866752 22866752 G A TUBGCP5 Silent p.K788K 0.32 TCGA-GM-A2D9-01 15 22963843 22963843 G A CYFIP1 Missense_Mutation p.R786Q 0.10 deleterious(0.01) possibly_damaging(0.634) TCGA-GM-A2D9-01 15 24921978 24921978 C T NPAP1 Missense_Mutation p.R322C 0.57 tolerated(0.1) benign(0.004) TCGA-GM-A2D9-01 15 25932865 25932865 G A ATP10A Silent p.F1092F 0.19 TCGA-GM-A2D9-01 15 28441424 28441424 C T HERC2 Missense_Mutation p.E2733K 0.08 possibly_damaging(0.456) TCGA-GM-A2D9-01 15 30925690 30925690 C T ARHGAP11B Intron 0.26 TCGA-GM-A2D9-01 15 40259885 40259885 T G EIF2AK4 Missense_Mutation p.I453S 0.34 deleterious(0) probably_damaging(0.925) TCGA-GM-A2D9-01 15 41687186 41687186 G C NDUFAF1 Silent p.L210L 0.11 TCGA-GM-A2D9-01 15 42445858 42445858 C T PLA2G4F Missense_Mutation p.D151N 0.30 tolerated(0.27) benign(0.008) TCGA-GM-A2D9-01 15 43814005 43814005 G C MAP1A Missense_Mutation p.E112Q 0.27 probably_damaging(0.997) TCGA-GM-A2D9-01 15 50786430 50786430 G C USP8 Missense_Mutation p.E871Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-GM-A2D9-01 15 52901535 52901535 C T FAM214A Missense_Mutation p.E526K 0.30 deleterious(0.02) benign(0.394) TCGA-GM-A2D9-01 15 55710321 55710321 G C C15orf65 Intron 0.24 TCGA-GM-A2D9-01 15 58957358 58957358 C T ADAM10 Missense_Mutation p.D175N 0.09 tolerated(0.09) benign(0.141) TCGA-GM-A2D9-01 15 62209576 62209576 C A VPS13C Silent p.R2673R 0.07 TCGA-GM-A2D9-01 15 63937864 63937864 C T HERC1 Missense_Mutation p.M3632I 0.10 benign(0.001) TCGA-GM-A2D9-01 15 65456512 65456512 G T CLPX Silent p.L176L 0.18 TCGA-GM-A2D9-01 15 65676706 65676706 C A IGDCC4 Nonsense_Mutation p.E1132* 0.24 TCGA-GM-A2D9-01 15 86269682 86269682 C T AKAP13 Nonsense_Mutation p.Q2267* 0.10 TCGA-GM-A2D9-01 15 89817405 89817405 G C FANCI Missense_Mutation p.D328H 0.07 deleterious(0) probably_damaging(0.967) TCGA-GM-A2D9-01 15 91432751 91432751 G A FES Missense_Mutation p.A271T 0.22 tolerated(0.6) benign(0) TCGA-GM-A2D9-01 15 91475126 91475126 C T HDDC3 Missense_Mutation p.E73K 0.20 deleterious(0) possibly_damaging(0.892) TCGA-GM-A2D9-01 15 91769875 91769875 G A SV2B Missense_Mutation p.V128M 0.15 deleterious(0) possibly_damaging(0.746) TCGA-GM-A2D9-01 15 95013628 95013628 C T MCTP2 Silent p.I809I 0.27 TCGA-GM-A2D9-01 16 11862173 11862173 G A ZC3H7A Missense_Mutation p.S453L 0.09 deleterious(0) benign(0.089) TCGA-GM-A2D9-01 16 15675102 15675102 G A C16orf45 Silent p.Q111Q 0.17 TCGA-GM-A2D9-01 16 1705223 1705223 G T CRAMP1L Missense_Mutation p.M347I 0.18 tolerated(0.14) benign(0.42) TCGA-GM-A2D9-01 16 20429440 20429440 C T ACSM5 Silent p.I88I 0.18 TCGA-GM-A2D9-01 16 20548544 20548544 G A ACSM2B 3'UTR 0.13 TCGA-GM-A2D9-01 16 22145727 22145727 G A VWA3A Missense_Mutation p.E703K 0.20 deleterious(0) possibly_damaging(0.901) TCGA-GM-A2D9-01 16 2289998 2289998 G C ECI1 Silent p.L297L 0.10 TCGA-GM-A2D9-01 16 2290023 2290023 G C ECI1 Missense_Mutation p.S289C 0.12 deleterious(0.01) probably_damaging(0.911) TCGA-GM-A2D9-01 16 23403719 23403719 G A COG7 Nonsense_Mutation p.Q710* 0.08 TCGA-GM-A2D9-01 16 2711442 2711442 C G ERVK13-1 RNA 0.09 TCGA-GM-A2D9-01 16 2990074 2990074 G A FLYWCH1 Missense_Mutation p.E697K 0.28 tolerated_low_confidence(0.06) benign(0.002) TCGA-GM-A2D9-01 16 31123407 31123407 G T BCKDK Intron 0.19 TCGA-GM-A2D9-01 16 31391110 31391110 C T ITGAX Silent p.V967V 0.25 TCGA-GM-A2D9-01 16 31539850 31539850 C G AHSP Missense_Mutation p.I49M 0.25 deleterious(0.03) possibly_damaging(0.616) TCGA-GM-A2D9-01 16 32077573 32077573 C G IGHV3OR16-9 Missense_Mutation p.S63C 0.11 deleterious_low_confidence(0) benign(0.414) TCGA-GM-A2D9-01 16 396427 396427 G C AXIN1 Missense_Mutation p.S200C 0.08 deleterious(0.01) possibly_damaging(0.647) TCGA-GM-A2D9-01 16 49764732 49764732 A C ZNF423 Missense_Mutation p.F76C 0.64 deleterious(0) benign(0.159) TCGA-GM-A2D9-01 16 62055071 62055071 C T CDH8 Silent p.P79P 0.33 TCGA-GM-A2D9-01 16 633034 633034 G A PIGQ Silent p.L561L 0.09 TCGA-GM-A2D9-01 16 67100669 67100669 G T CBFB Missense_Mutation p.G123C 0.60 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 16 70765530 70765530 C G VAC14 Missense_Mutation p.G510A 0.32 tolerated(0.18) benign(0.001) TCGA-GM-A2D9-01 16 84256443 84256443 C A KCNG4 Nonsense_Mutation p.E314* 0.50 TCGA-GM-A2D9-01 16 88498652 88498652 G A ZNF469 Missense_Mutation p.E1564K 0.30 benign(0.145) TCGA-GM-A2D9-01 17 1368998 1368998 G A MYO1C 3'UTR 0.10 TCGA-GM-A2D9-01 17 13972944 13972944 C T COX10 Missense_Mutation p.L8F 0.47 tolerated_low_confidence(0.2) benign(0.003) TCGA-GM-A2D9-01 17 17116910 17116910 C T FLCN 3'UTR 0.14 TCGA-GM-A2D9-01 17 2601227 2601227 G T CLUH Missense_Mutation p.L604M 0.33 deleterious(0) probably_damaging(0.947) TCGA-GM-A2D9-01 17 26948468 26948468 C G KIAA0100 Missense_Mutation p.E1670Q 0.18 deleterious(0.02) possibly_damaging(0.703) TCGA-GM-A2D9-01 17 27052391 27052391 G A TLCD1 Silent p.H97H 0.27 TCGA-GM-A2D9-01 17 27061021 27061021 G A NEK8 Missense_Mutation p.R23Q 0.23 deleterious(0.01) probably_damaging(0.961) TCGA-GM-A2D9-01 17 28256897 28256897 G A SSH2 Intron 0.20 TCGA-GM-A2D9-01 17 29182316 29182316 G A ATAD5 Missense_Mutation p.R869K 0.14 tolerated(0.68) benign(0.003) TCGA-GM-A2D9-01 17 32685048 32685048 C T CCL13 Silent p.F65F 0.20 TCGA-GM-A2D9-01 17 33881681 33881681 G A SLFN14 Missense_Mutation p.S368L 0.13 tolerated(0.72) benign(0.001) TCGA-GM-A2D9-01 17 35605519 35605519 T A ACACA Nonsense_Mutation p.K721* 0.51 TCGA-GM-A2D9-01 17 3623653 3623653 G C ITGAE Missense_Mutation p.S1094C 0.08 deleterious(0) probably_damaging(0.968) TCGA-GM-A2D9-01 17 36482953 36482953 C T GPR179 Missense_Mutation p.E2167K 0.32 tolerated(0.14) benign(0.231) TCGA-GM-A2D9-01 17 37627609 37627609 G A CDK12 Silent p.L508L 0.16 TCGA-GM-A2D9-01 17 39296044 39296044 G A KRTAP4-6 3'UTR 0.33 TCGA-GM-A2D9-01 17 39726263 39726263 C T KRT9 Missense_Mutation p.E244K 0.27 deleterious(0) probably_damaging(0.991) TCGA-GM-A2D9-01 17 40323836 40323836 C A KCNH4 Nonsense_Mutation p.E389* 0.37 TCGA-GM-A2D9-01 17 40474494 40474494 G A STAT3 Missense_Mutation p.S636F 0.08 deleterious(0) probably_damaging(0.997) TCGA-GM-A2D9-01 17 40652837 40652837 G T ATP6V0A1 Missense_Mutation p.D605Y 0.23 tolerated(0.08) possibly_damaging(0.701) TCGA-GM-A2D9-01 17 40818203 40818203 C G TUBG2 Missense_Mutation p.N314K 0.15 tolerated(0.15) benign(0.005) TCGA-GM-A2D9-01 17 40818230 40818230 C A TUBG2 Silent p.I323I 0.17 TCGA-GM-A2D9-01 17 41244804 41244804 G C BRCA1 Missense_Mutation p.S915C 0.18 deleterious(0.01) benign(0.426) TCGA-GM-A2D9-01 17 423084 423084 C T VPS53 Silent p.Q770Q 0.11 TCGA-GM-A2D9-01 17 4542374 4542374 C T ALOX15 Missense_Mutation p.E131K 0.07 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 17 4578149 4578149 G A PELP1 Silent p.L459L 0.15 TCGA-GM-A2D9-01 17 46894360 46894360 C T TTLL6 Silent p.A25A 0.16 TCGA-GM-A2D9-01 17 47118821 47118821 G A IGF2BP1 Silent p.K300K 0.25 TCGA-GM-A2D9-01 17 4846753 4846753 C G RNF167 Silent p.L203L 0.07 TCGA-GM-A2D9-01 17 49133809 49133809 C G SPAG9 Missense_Mutation p.K153N 0.22 deleterious(0) possibly_damaging(0.823) TCGA-GM-A2D9-01 17 4937922 4937922 C G SLC52A1 5'UTR 0.11 TCGA-GM-A2D9-01 17 5322859 5322859 C T NUP88 Missense_Mutation p.E38K 0.23 tolerated(0.44) benign(0.004) TCGA-GM-A2D9-01 17 57057536 57057536 C T PPM1E Missense_Mutation p.S471L 0.17 tolerated(0.08) benign(0.425) TCGA-GM-A2D9-01 17 58120880 58120880 C T HEATR6 3'UTR 0.10 TCGA-GM-A2D9-01 17 59560889 59560889 C T TBX4 3'UTR 0.29 TCGA-GM-A2D9-01 17 6510269 6510269 C G KIAA0753 Missense_Mutation p.D645H 0.19 deleterious(0.01) possibly_damaging(0.756) TCGA-GM-A2D9-01 17 6510571 6510571 C T KIAA0753 Missense_Mutation p.E617K 0.35 tolerated(0.06) benign(0.196) TCGA-GM-A2D9-01 17 72945392 72945392 G A OTOP3 Missense_Mutation p.E558K 0.20 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 17 73517943 73517943 C A TSEN54 Missense_Mutation p.L261M 0.40 tolerated(0.11) possibly_damaging(0.534) TCGA-GM-A2D9-01 17 7751761 7751761 G A KDM6B Missense_Mutation p.V719M 0.21 unknown(0) TCGA-GM-A2D9-01 17 78307961 78307961 C A RNF213 Silent p.L1400L 0.40 TCGA-GM-A2D9-01 17 79256058 79256058 C T SLC38A10 Silent p.R144R 0.17 TCGA-GM-A2D9-01 17 8741878 8741878 C A PIK3R6 Intron 0.16 TCGA-GM-A2D9-01 18 13071112 13071112 G A CEP192 Missense_Mutation p.G1750E 0.08 tolerated(0.84) benign(0.074) TCGA-GM-A2D9-01 18 14511953 14511953 C T POTEC Missense_Mutation p.E525K 0.17 tolerated_low_confidence(0.84) probably_damaging(0.931) TCGA-GM-A2D9-01 18 2575037 2575037 G A NDC80 Missense_Mutation p.E51K 0.12 deleterious(0) possibly_damaging(0.739) TCGA-GM-A2D9-01 18 31326392 31326392 C T ASXL3 Nonsense_Mutation p.Q2194* 0.07 TCGA-GM-A2D9-01 18 33696718 33696718 C T SLC39A6 Missense_Mutation p.D462N 0.12 tolerated(0.1) possibly_damaging(0.572) TCGA-GM-A2D9-01 18 47810860 47810860 C T CXXC1 Missense_Mutation p.D369N 0.07 tolerated(0.08) benign(0.418) TCGA-GM-A2D9-01 18 48591837 48591837 C T SMAD4 Nonsense_Mutation p.Q334* 0.07 TCGA-GM-A2D9-01 18 5290995 5290995 C T ZBTB14 Silent p.L404L 0.15 TCGA-GM-A2D9-01 18 61325778 61325778 C G SERPINB3 Missense_Mutation p.K146N 0.08 deleterious(0.01) possibly_damaging(0.879) TCGA-GM-A2D9-01 18 71958984 71958984 C G CYB5A Missense_Mutation p.E43Q 0.08 deleterious(0.03) benign(0.254) TCGA-GM-A2D9-01 19 11123624 11123624 G T SMARCA4 Splice_Site p.X759_splice 0.40 TCGA-GM-A2D9-01 19 1119543 1119543 C G SBNO2 Missense_Mutation p.E449Q 0.33 tolerated(0.3) benign(0.071) TCGA-GM-A2D9-01 19 11890986 11890986 C G ZNF441 Nonsense_Mutation p.S116* 0.18 TCGA-GM-A2D9-01 19 12460899 12460899 G A ZNF442 Silent p.F500F 0.24 TCGA-GM-A2D9-01 19 13370461 13370461 C T CACNA1A Nonsense_Mutation p.W1435* 0.24 TCGA-GM-A2D9-01 19 14706106 14706106 C A CLEC17A Missense_Mutation p.P142T 0.29 deleterious(0.01) benign(0.196) TCGA-GM-A2D9-01 19 14720887 14720887 C T CLEC17A Missense_Mutation p.P339L 0.25 tolerated(0.12) benign(0.057) TCGA-GM-A2D9-01 19 14938550 14938550 G T OR7A5 Missense_Mutation p.F168L 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-GM-A2D9-01 19 17003994 17003994 G C CPAMD8 Silent p.V1908V 0.17 TCGA-GM-A2D9-01 19 18543526 18543526 C T SSBP4 Missense_Mutation p.S256L 0.37 deleterious(0.01) possibly_damaging(0.528) TCGA-GM-A2D9-01 19 2223463 2223463 G A DOT1L Missense_Mutation p.E1192K 0.45 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-GM-A2D9-01 19 33092966 33092966 C T ANKRD27 Missense_Mutation p.E908K 0.10 deleterious(0.04) benign(0.292) TCGA-GM-A2D9-01 19 39003071 39003071 C T RYR1 Silent p.L3140L 0.40 TCGA-GM-A2D9-01 19 40433086 40433086 C T FCGBP Missense_Mutation p.E395K 0.24 benign(0.344) TCGA-GM-A2D9-01 19 4268750 4268750 G C CCDC94 3'UTR 0.36 TCGA-GM-A2D9-01 19 42880508 42880508 G T MEGF8 Missense_Mutation p.D2640Y 0.25 deleterious(0) possibly_damaging(0.603) TCGA-GM-A2D9-01 19 43234207 43234207 C T PSG3 Silent p.P237P 0.09 TCGA-GM-A2D9-01 19 44235642 44235642 C G SMG9 3'UTR 0.50 TCGA-GM-A2D9-01 19 4445603 4445603 C G UBXN6 Silent p.L406L 0.29 TCGA-GM-A2D9-01 19 46027118 46027118 G C VASP Missense_Mutation p.R298T 0.10 tolerated(0.24) probably_damaging(0.972) TCGA-GM-A2D9-01 19 49497046 49497046 A C RUVBL2 5'UTR 0.21 TCGA-GM-A2D9-01 19 50311871 50311871 C T FUZ Silent p.L306L 0.19 TCGA-GM-A2D9-01 19 52538468 52538468 G C ZNF432 Missense_Mutation p.S155C 0.19 tolerated(0.12) benign(0.343) TCGA-GM-A2D9-01 19 52538586 52538586 G C ZNF432 Missense_Mutation p.Q116E 0.23 tolerated(0.78) benign(0.014) TCGA-GM-A2D9-01 19 52568470 52568470 G C ZNF841 Missense_Mutation p.R889G 0.23 tolerated(0.38) possibly_damaging(0.655) TCGA-GM-A2D9-01 19 52658282 52658282 G A ZNF836 Missense_Mutation p.S885F 0.16 deleterious(0) probably_damaging(0.993) TCGA-GM-A2D9-01 19 53761870 53761870 G A VN1R2 Missense_Mutation p.G81E 0.14 deleterious_low_confidence(0.01) benign(0.044) TCGA-GM-A2D9-01 19 54169950 54169950 C G MIR512-1 RNA 0.09 TCGA-GM-A2D9-01 19 56424055 56424055 C T NLRP13 Silent p.V376V 0.09 TCGA-GM-A2D9-01 19 58190194 58190194 C G ZSCAN4 Nonsense_Mutation p.S408* 0.22 TCGA-GM-A2D9-01 19 58578410 58578410 C T ZNF135 Silent p.S210S 0.26 TCGA-GM-A2D9-01 19 58774288 58774288 G C ZNF544 3'UTR 0.40 TCGA-GM-A2D9-01 19 59061137 59061137 C T TRIM28 Silent p.L672L 0.50 TCGA-GM-A2D9-01 19 7152896 7152896 G C INSR Missense_Mutation p.S691C 0.24 tolerated(0.06) benign(0.353) TCGA-GM-A2D9-01 19 855584 855584 C G ELANE Missense_Mutation p.I129M 0.33 deleterious(0.02) benign(0.173) TCGA-GM-A2D9-01 19 8995652 8995652 G C MUC16 Missense_Mutation p.S13779W 0.29 probably_damaging(0.997) TCGA-GM-A2D9-01 1 101361804 101361804 C T SLC30A7 5'UTR 0.23 TCGA-GM-A2D9-01 1 110563430 110563430 C T AHCYL1 Silent p.L515L 0.30 TCGA-GM-A2D9-01 1 112319680 112319680 G A KCND3 Silent p.I578I 0.14 TCGA-GM-A2D9-01 1 114940464 114940464 G A TRIM33 Nonsense_Mutation p.Q1064* 0.32 TCGA-GM-A2D9-01 1 115137127 115137127 C G DENND2C Missense_Mutation p.E800Q 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-GM-A2D9-01 1 11562785 11562785 G A PTCHD2 Missense_Mutation p.E383K 0.21 tolerated(0.13) probably_damaging(0.993) TCGA-GM-A2D9-01 1 118166678 118166678 G C FAM46C 3'UTR 0.13 TCGA-GM-A2D9-01 1 11900279 11900279 G C CLCN6 Nonstop_Mutation p.*870Sext*58 0.20 TCGA-GM-A2D9-01 1 146684013 146684013 A G FMO5 Missense_Mutation p.I193T 0.07 tolerated(0.1) benign(0.291) TCGA-GM-A2D9-01 1 147851582 147851582 G C LINC01138 RNA 0.29 TCGA-GM-A2D9-01 1 150044294 150044294 G C VPS45 Splice_Site p.X97_splice 0.05 TCGA-GM-A2D9-01 1 150671180 150671180 C G HORMAD1 Missense_Mutation p.E379Q 0.07 tolerated(0.14) benign(0.421) TCGA-GM-A2D9-01 1 150958868 150958868 G A ANXA9 Missense_Mutation p.D177N 0.28 tolerated(0.29) possibly_damaging(0.688) TCGA-GM-A2D9-01 1 151315885 151315885 G C RFX5 Missense_Mutation p.S264C 0.17 tolerated(0.08) benign(0.01) TCGA-GM-A2D9-01 1 152080169 152080169 C G TCHH Missense_Mutation p.D1842H 0.06 possibly_damaging(0.759) TCGA-GM-A2D9-01 1 152080607 152080607 C T TCHH Missense_Mutation p.E1696K 0.14 unknown(0) TCGA-GM-A2D9-01 1 152286740 152286740 C G FLG Missense_Mutation p.E208Q 0.09 possibly_damaging(0.728) TCGA-GM-A2D9-01 1 152324572 152324572 G A FLG2 Missense_Mutation p.S1897L 0.18 possibly_damaging(0.867) TCGA-GM-A2D9-01 1 154145637 154145637 C T TPM3 Missense_Mutation p.E140K 0.08 deleterious(0) possibly_damaging(0.746) TCGA-GM-A2D9-01 1 155733331 155733331 G A GON4L Silent p.L1500L 0.11 TCGA-GM-A2D9-01 1 155984806 155984806 G A SSR2 Silent p.F103F 0.08 TCGA-GM-A2D9-01 1 156084959 156084959 G A LMNA Missense_Mutation p.E84K 0.21 deleterious(0) probably_damaging(0.992) TCGA-GM-A2D9-01 1 156721053 156721053 C T HDGF Intron 0.39 TCGA-GM-A2D9-01 1 156917130 156917130 G C ARHGEF11 Silent p.L818L 0.22 TCGA-GM-A2D9-01 1 156917199 156917199 G A ARHGEF11 Silent p.V795V 0.13 TCGA-GM-A2D9-01 1 157737491 157737491 C G FCRL2 Intron 0.17 TCGA-GM-A2D9-01 1 159043091 159043091 G C AIM2 Missense_Mutation p.R67G 0.12 tolerated(0.45) benign(0.018) TCGA-GM-A2D9-01 1 159410499 159410499 G T OR10J1 Silent p.G317G 0.36 TCGA-GM-A2D9-01 1 160720203 160720203 G C SLAMF7 Missense_Mutation p.E253D 0.05 tolerated(0.16) benign(0.035) TCGA-GM-A2D9-01 1 160924223 160924223 G C ITLN2 Silent p.L11L 0.10 TCGA-GM-A2D9-01 1 161069897 161069897 G A KLHDC9 Silent p.G311G 0.21 TCGA-GM-A2D9-01 1 161695787 161695787 G A FCRLB Missense_Mutation p.D162N 0.13 tolerated(0.1) probably_damaging(0.997) TCGA-GM-A2D9-01 1 161721745 161721745 G A DUSP12 Missense_Mutation p.R183H 0.13 deleterious(0) probably_damaging(0.994) TCGA-GM-A2D9-01 1 161823031 161823031 G A ATF6 Missense_Mutation p.R484Q 0.10 deleterious(0.03) possibly_damaging(0.877) TCGA-GM-A2D9-01 1 162782249 162782249 G C HSD17B7 3'UTR 0.20 TCGA-GM-A2D9-01 1 16377454 16377454 G T CLCNKB Nonsense_Mutation p.E380* 0.17 TCGA-GM-A2D9-01 1 16893761 16893761 G C NBPF1 Missense_Mutation p.L918V 0.03 tolerated(0.09) possibly_damaging(0.717) TCGA-GM-A2D9-01 1 17046559 17046559 C T ESPNP RNA 0.07 TCGA-GM-A2D9-01 1 173570983 173570983 C T SLC9C2 5'UTR 0.23 TCGA-GM-A2D9-01 1 176833446 176833446 C T ASTN1 Missense_Mutation p.D1287N 0.14 tolerated_low_confidence(0.11) benign(0.029) TCGA-GM-A2D9-01 1 17723602 17723602 G A PADI6 RNA 0.25 TCGA-GM-A2D9-01 1 179520502 179520502 G C NPHS2 Missense_Mutation p.Q320E 0.10 deleterious(0) possibly_damaging(0.817) TCGA-GM-A2D9-01 1 180062597 180062597 G C CEP350 Missense_Mutation p.D2453H 0.19 benign(0.181) TCGA-GM-A2D9-01 1 180062700 180062700 C A CEP350 Nonsense_Mutation p.S2487* 0.11 TCGA-GM-A2D9-01 1 180905575 180905575 C T KIAA1614 Missense_Mutation p.R844W 0.19 deleterious(0.05) possibly_damaging(0.609) TCGA-GM-A2D9-01 1 183184715 183184715 G C LAMC2 Missense_Mutation p.Q132H 0.15 tolerated(0.14) benign(0.002) TCGA-GM-A2D9-01 1 187610859 187610859 C T ERVMER61-1 RNA 0.23 TCGA-GM-A2D9-01 1 198222169 198222169 G C NEK7 Splice_Site p.X20_splice 0.21 TCGA-GM-A2D9-01 1 201969071 201969071 C T RNPEP Silent p.L378L 0.18 TCGA-GM-A2D9-01 1 204411737 204411737 C T PIK3C2B Missense_Mutation p.E1025K 0.19 tolerated(0.23) benign(0.118) TCGA-GM-A2D9-01 1 207307857 207307857 C G C4BPA Nonsense_Mutation p.S398* 0.11 TCGA-GM-A2D9-01 1 207867838 207867838 G A CR1L Missense_Mutation p.E202K 0.07 deleterious(0.04) possibly_damaging(0.595) TCGA-GM-A2D9-01 1 207930399 207930399 C T CD46 Silent p.L46L 0.11 TCGA-GM-A2D9-01 1 209956721 209956721 C T C1orf74 Missense_Mutation p.E87K 0.11 tolerated(0.21) benign(0.359) TCGA-GM-A2D9-01 1 212798754 212798754 G T FAM71A Nonsense_Mutation p.E179* 0.23 TCGA-GM-A2D9-01 1 220355610 220355610 G A RAB3GAP2 Nonsense_Mutation p.Q767* 0.39 TCGA-GM-A2D9-01 1 2252884 2252884 C T MORN1 Missense_Mutation p.E478K 0.32 tolerated(0.13) benign(0.021) TCGA-GM-A2D9-01 1 228509154 228509154 C T OBSCN Missense_Mutation p.S5828L 0.10 probably_damaging(0.924) TCGA-GM-A2D9-01 1 228509242 228509242 C T OBSCN Silent p.F5857F 0.22 TCGA-GM-A2D9-01 1 228553839 228553839 C T OBSCN Silent p.F7333F 0.06 TCGA-GM-A2D9-01 1 233515233 233515233 C G MLK4 Silent p.V827V 0.18 TCGA-GM-A2D9-01 1 23408840 23408840 C G KDM1A Missense_Mutation p.S809W 0.20 deleterious(0) possibly_damaging(0.734) TCGA-GM-A2D9-01 1 234458869 234458869 G C SLC35F3 Missense_Mutation p.L451F 0.12 deleterious(0.05) possibly_damaging(0.89) TCGA-GM-A2D9-01 1 236211999 236211999 C T NID1 Silent p.Q172Q 0.19 TCGA-GM-A2D9-01 1 240492406 240492406 G A FMN2 Missense_Mutation p.E1416K 0.11 benign(0.055) TCGA-GM-A2D9-01 1 247007198 247007198 C T AHCTF1 Missense_Mutation p.E2151K 0.09 deleterious(0.03) possibly_damaging(0.779) TCGA-GM-A2D9-01 1 248263205 248263205 C T OR2L13 Silent p.F176F 0.17 TCGA-GM-A2D9-01 1 29314067 29314067 C G EPB41 Missense_Mutation p.Q40E 0.19 tolerated_low_confidence(0.34) benign(0) TCGA-GM-A2D9-01 1 33099258 33099258 G A ZBTB8OS Silent p.F117F 0.33 TCGA-GM-A2D9-01 1 36225955 36225955 C T CLSPN Missense_Mutation p.E523K 0.23 tolerated(0.26) benign(0.012) TCGA-GM-A2D9-01 1 36859331 36859331 G A LSM10 3'UTR 0.17 TCGA-GM-A2D9-01 1 39917982 39917982 C A MACF1 Missense_Mutation p.S4799Y 0.12 probably_damaging(1) TCGA-GM-A2D9-01 1 40092629 40092629 G C HEYL Missense_Mutation p.F179L 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-GM-A2D9-01 1 45278870 45278870 C T BTBD19 Missense_Mutation p.R182C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-GM-A2D9-01 1 45340235 45340235 C G EIF2B3 Intron 0.57 TCGA-GM-A2D9-01 1 52850377 52850377 C T ORC1 Missense_Mutation p.G534S 0.43 deleterious(0) probably_damaging(0.994) TCGA-GM-A2D9-01 1 55166888 55166888 G T MROH7 Nonsense_Mutation p.E1060* 0.31 TCGA-GM-A2D9-01 1 55166932 55166932 G A MROH7 Silent p.Q1074Q 0.29 TCGA-GM-A2D9-01 1 55182279 55182279 G C TTC4 Missense_Mutation p.E40Q 0.23 deleterious(0.02) benign(0.129) TCGA-GM-A2D9-01 1 55224384 55224384 C T PARS2 Missense_Mutation p.E151K 0.29 tolerated(0.13) possibly_damaging(0.486) TCGA-GM-A2D9-01 1 57480804 57480804 G A DAB1 Missense_Mutation p.S399L 0.15 tolerated(0.26) benign(0.253) TCGA-GM-A2D9-01 1 5950965 5950965 G A NPHP4 Missense_Mutation p.S756F 0.19 deleterious(0) probably_damaging(0.987) TCGA-GM-A2D9-01 1 6172263 6172263 T C CHD5 Missense_Mutation p.K1693E 0.42 tolerated(0.35) benign(0.053) TCGA-GM-A2D9-01 1 62979159 62979159 C T DOCK7 Missense_Mutation p.R1382Q 0.31 deleterious(0.01) probably_damaging(0.943) TCGA-GM-A2D9-01 1 6512048 6512048 C T ESPN Silent p.L739L 0.16 TCGA-GM-A2D9-01 1 6512053 6512053 C T ESPN Missense_Mutation p.P741L 0.15 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 1 7887394 7887394 A G PER3 Missense_Mutation p.Q794R 0.27 tolerated(0.19) benign(0.403) TCGA-GM-A2D9-01 1 90180536 90180536 G C LRRC8C Missense_Mutation p.E803Q 0.24 tolerated(0.05) possibly_damaging(0.796) TCGA-GM-A2D9-01 20 1161834 1161834 G T TMEM74B Silent p.I143I 0.29 TCGA-GM-A2D9-01 20 20571870 20571870 G T RALGAPA2 Missense_Mutation p.S764R 0.38 deleterious(0) benign(0.016) TCGA-GM-A2D9-01 20 2463944 2463944 C T ZNF343 Missense_Mutation p.G555S 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-GM-A2D9-01 20 32217579 32217579 C G CBFA2T2 Missense_Mutation p.L372V 0.19 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 20 32891135 32891135 G C AHCY 5'UTR 0.19 TCGA-GM-A2D9-01 20 44642428 44642428 C A MMP9 Missense_Mutation p.F581L 0.18 deleterious(0.03) probably_damaging(0.993) TCGA-GM-A2D9-01 20 44815342 44815342 G A CDH22 Silent p.L516L 0.23 TCGA-GM-A2D9-01 20 45891111 45891111 G C ZMYND8 Missense_Mutation p.F514L 0.20 tolerated_low_confidence(0.2) benign(0.03) TCGA-GM-A2D9-01 20 48467329 48467329 G C SLC9A8 Missense_Mutation p.V189L 0.21 tolerated_low_confidence(1) benign(0) TCGA-GM-A2D9-01 20 49558613 49558613 C A DPM1 Missense_Mutation p.G150V 0.26 tolerated(0.09) benign(0.081) TCGA-GM-A2D9-01 20 57485827 57485827 C G GNAS Missense_Mutation p.F1019L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-GM-A2D9-01 20 58514156 58514156 G A PPP1R3D Silent p.L277L 0.14 TCGA-GM-A2D9-01 21 27945194 27945194 G C CYYR1 Silent p.V22V 0.25 TCGA-GM-A2D9-01 21 34133468 34133468 C G PAXBP1 Missense_Mutation p.E293Q 0.29 tolerated(0.1) benign(0.209) TCGA-GM-A2D9-01 21 34955797 34955797 C T DONSON Missense_Mutation p.E321K 0.29 deleterious(0) probably_damaging(0.994) TCGA-GM-A2D9-01 21 36171619 36171619 C T RUNX1 Missense_Mutation p.E316K 0.28 tolerated(0.27) benign(0.082) TCGA-GM-A2D9-01 21 43342090 43342090 G A C2CD2 Silent p.F161F 0.33 TCGA-GM-A2D9-01 21 43862675 43862675 G C UBASH3A Missense_Mutation p.E534Q 0.11 tolerated(0.12) benign(0.133) TCGA-GM-A2D9-01 21 43916240 43916240 C A RSPH1 Intron 0.06 TCGA-GM-A2D9-01 22 18185259 18185259 C T BCL2L13 Intron 0.30 TCGA-GM-A2D9-01 22 19423399 19423399 A G MRPL40 Missense_Mutation p.T179A 0.33 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 22 23632528 23632528 G A BCR Missense_Mutation p.D904N 0.22 deleterious(0.03) benign(0.403) TCGA-GM-A2D9-01 22 24939903 24939903 G A GUCD1 Missense_Mutation p.R179C 0.09 deleterious(0) benign(0.001) TCGA-GM-A2D9-01 22 29833798 29833798 G A RFPL1 5'Flank 0.28 TCGA-GM-A2D9-01 22 31337485 31337485 C T MORC2 Missense_Mutation p.M191I 0.12 deleterious(0) probably_damaging(0.995) TCGA-GM-A2D9-01 22 37532390 37532390 C T IL2RB Missense_Mutation p.C194Y 0.27 tolerated(1) benign(0.003) TCGA-GM-A2D9-01 22 38227992 38227992 G A ANKRD54 Silent p.F287F 0.30 TCGA-GM-A2D9-01 22 38468540 38468540 G A PICK1 Missense_Mutation p.E205K 0.18 tolerated(0.08) possibly_damaging(0.643) TCGA-GM-A2D9-01 22 50316065 50316065 G A CRELD2 Missense_Mutation p.R238K 0.18 tolerated_low_confidence(1) benign(0.022) TCGA-GM-A2D9-01 22 50718173 50718173 G C PLXNB2 Missense_Mutation p.F1425L 0.36 deleterious(0) possibly_damaging(0.827) TCGA-GM-A2D9-01 2 105897092 105897092 G C TGFBRAP1 Missense_Mutation p.L404V 0.29 deleterious(0) possibly_damaging(0.78) TCGA-GM-A2D9-01 2 109381005 109381005 C G RANBP2 Missense_Mutation p.S1337C 0.12 deleterious(0.01) possibly_damaging(0.712) TCGA-GM-A2D9-01 2 130897593 130897593 C T CCDC74B Intron 0.21 TCGA-GM-A2D9-01 2 135738782 135738782 G A MAP3K19 Missense_Mutation p.L1177F 0.30 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 2 135957866 135957866 C G ZRANB3 3'UTR 0.36 TCGA-GM-A2D9-01 2 1680709 1680709 G A PXDN Silent p.L280L 0.27 TCGA-GM-A2D9-01 2 169874629 169874629 C T ABCB11 Missense_Mutation p.D3N 0.34 tolerated_low_confidence(0.24) benign(0.007) TCGA-GM-A2D9-01 2 171240300 171240300 C T MYO3B Silent p.C422C 0.24 TCGA-GM-A2D9-01 2 171264270 171264270 C T MYO3B Missense_Mutation p.L856F 0.09 deleterious(0) possibly_damaging(0.903) TCGA-GM-A2D9-01 2 178095660 178095660 G C NFE2L2 Silent p.L557L 0.09 TCGA-GM-A2D9-01 2 179319227 179319227 C G DFNB59 Nonsense_Mutation p.S127* 0.29 TCGA-GM-A2D9-01 2 179320818 179320818 C G DFNB59 Missense_Mutation p.I163M 0.32 deleterious(0.01) possibly_damaging(0.831) TCGA-GM-A2D9-01 2 179485612 179485612 C G TTN Missense_Mutation p.R15242T 0.21 TCGA-GM-A2D9-01 2 179586739 179586739 C G TTN Missense_Mutation p.D7551H 0.30 TCGA-GM-A2D9-01 2 198360068 198360068 C T HSPD1 Missense_Mutation p.E154K 0.12 tolerated(0.2) probably_damaging(0.975) TCGA-GM-A2D9-01 2 21231015 21231015 C T APOB Missense_Mutation p.E2909K 0.09 benign(0.225) TCGA-GM-A2D9-01 2 213403315 213403315 C T ERBB4 5'UTR 0.27 TCGA-GM-A2D9-01 2 217329355 217329355 C G SMARCAL1 Missense_Mutation p.F702L 0.11 deleterious(0) probably_damaging(0.95) TCGA-GM-A2D9-01 2 218935485 218935485 C G RUFY4 Missense_Mutation p.S19C 0.33 deleterious(0.05) benign(0.165) TCGA-GM-A2D9-01 2 220439988 220439988 G A INHA Missense_Mutation p.V281M 0.20 deleterious(0) probably_damaging(0.997) TCGA-GM-A2D9-01 2 230911111 230911111 C T SLC16A14 Missense_Mutation p.G244E 0.27 tolerated(0.23) benign(0.243) TCGA-GM-A2D9-01 2 238280314 238280314 G A COL6A3 Intron 0.23 TCGA-GM-A2D9-01 2 238280436 238280436 G T COL6A3 Silent p.I1408I 0.17 TCGA-GM-A2D9-01 2 238436082 238436082 G A MLPH Missense_Mutation p.D315N 0.46 deleterious(0) possibly_damaging(0.889) TCGA-GM-A2D9-01 2 239757036 239757036 C T TWIST2 Silent p.S60S 0.38 TCGA-GM-A2D9-01 2 26688888 26688888 G A OTOF Silent p.I1519I 0.07 TCGA-GM-A2D9-01 2 27596775 27596775 C T SNX17 Silent p.L123L 0.08 TCGA-GM-A2D9-01 2 27676969 27676969 G A IFT172 Silent p.D1197D 0.15 TCGA-GM-A2D9-01 2 27800889 27800889 C G C2orf16 Missense_Mutation p.Q484E 0.12 deleterious(0.01) benign(0) TCGA-GM-A2D9-01 2 29295000 29295000 C T C2orf71 Missense_Mutation p.E710K 0.35 tolerated(0.24) benign(0.034) TCGA-GM-A2D9-01 2 39963984 39963984 C G THUMPD2 Missense_Mutation p.R468T 0.26 deleterious(0.04) benign(0.003) TCGA-GM-A2D9-01 2 44102320 44102320 C T ABCG8 Silent p.I508I 0.32 TCGA-GM-A2D9-01 2 44102524 44102524 C A ABCG8 Missense_Mutation p.F576L 0.27 tolerated(0.06) probably_damaging(0.984) TCGA-GM-A2D9-01 2 46372316 46372316 G A PRKCE Silent p.L559L 0.07 TCGA-GM-A2D9-01 2 46603876 46603876 C T EPAS1 Silent p.I411I 0.23 TCGA-GM-A2D9-01 2 61541742 61541742 G A USP34 Missense_Mutation p.H1174Y 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-GM-A2D9-01 2 63085619 63085619 C T EHBP1 Missense_Mutation p.S238L 0.14 tolerated(0.07) benign(0.284) TCGA-GM-A2D9-01 2 68546388 68546388 C G CNRIP1 Missense_Mutation p.E49Q 0.32 tolerated(0.14) possibly_damaging(0.674) TCGA-GM-A2D9-01 2 68962248 68962248 G A ARHGAP25 5'UTR 0.10 TCGA-GM-A2D9-01 2 70502110 70502110 C G PCYOX1 Missense_Mutation p.H172D 0.29 deleterious(0) benign(0.071) TCGA-GM-A2D9-01 2 71218988 71218988 C A TEX261 Silent p.L92L 0.08 TCGA-GM-A2D9-01 2 75426141 75426141 C T TACR1 5'UTR 0.22 TCGA-GM-A2D9-01 2 85276514 85276514 G C KCMF1 Silent p.V209V 0.13 TCGA-GM-A2D9-01 2 85276734 85276734 C T KCMF1 Nonsense_Mutation p.Q283* 0.12 TCGA-GM-A2D9-01 2 90193159 90193159 C G IGKV1D-13 Missense_Mutation p.S29C 0.12 deleterious(0) probably_damaging(0.965) TCGA-GM-A2D9-01 2 95946989 95946989 G A PROM2 Splice_Site p.X476_splice 0.32 TCGA-GM-A2D9-01 2 96071539 96071539 C T FAHD2A Missense_Mutation p.S78L 0.24 tolerated(0.09) benign(0.066) TCGA-GM-A2D9-01 2 98709585 98709585 C G VWA3B Missense_Mutation p.I10M 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.569) TCGA-GM-A2D9-01 3 10065390 10065390 C T FANCD2 5'Flank 0.26 TCGA-GM-A2D9-01 3 101284565 101284565 G C TRMT10C Missense_Mutation p.D314H 0.19 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 3 10320626 10320626 G C TATDN2 Missense_Mutation p.E735Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-GM-A2D9-01 3 10387223 10387223 C T ATP2B2 Missense_Mutation p.D850N 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-GM-A2D9-01 3 11340842 11340842 C T ATG7 Missense_Mutation p.S56F 0.07 tolerated(0.09) benign(0.027) TCGA-GM-A2D9-01 3 123452940 123452940 C T MYLK Silent p.Q301Q 0.35 TCGA-GM-A2D9-01 3 128621413 128621413 C T ACAD9 Silent p.L300L 0.35 TCGA-GM-A2D9-01 3 130282033 130282033 C A COL6A6 Missense_Mutation p.D62E 0.10 deleterious(0.04) benign(0.122) TCGA-GM-A2D9-01 3 134090095 134090095 C T AMOTL2 Missense_Mutation p.E61K 0.21 deleterious(0) possibly_damaging(0.547) TCGA-GM-A2D9-01 3 142102248 142102248 C T XRN1 Missense_Mutation p.R837Q 0.08 tolerated(0.23) benign(0.001) TCGA-GM-A2D9-01 3 142123867 142123867 C G XRN1 Missense_Mutation p.E589Q 0.29 deleterious(0) possibly_damaging(0.744) TCGA-GM-A2D9-01 3 155203309 155203309 G A PLCH1 Missense_Mutation p.S945F 0.29 tolerated(0.06) benign(0.379) TCGA-GM-A2D9-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.34 tolerated(0.06) possibly_damaging(0.801) TCGA-GM-A2D9-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.33 tolerated(0.11) possibly_damaging(0.529) TCGA-GM-A2D9-01 3 183508693 183508693 G A YEATS2 Missense_Mutation p.A1008T 0.21 tolerated_low_confidence(0.1) benign(0.001) TCGA-GM-A2D9-01 3 184289162 184289162 G A EPHB3 Missense_Mutation p.E59K 0.23 tolerated(0.7) benign(0.021) TCGA-GM-A2D9-01 3 185369915 185369915 G T IGF2BP2 Silent p.V476V 0.25 TCGA-GM-A2D9-01 3 195506620 195506620 G C MUC4 Nonsense_Mutation p.S3944* 0.51 TCGA-GM-A2D9-01 3 197241146 197241146 C T BDH1 Missense_Mutation p.R184Q 0.20 deleterious(0.04) probably_damaging(0.994) TCGA-GM-A2D9-01 3 197404353 197404353 C T KIAA0226 Silent p.K830K 0.12 TCGA-GM-A2D9-01 3 19925979 19925979 G A EFHB Silent p.L688L 0.25 TCGA-GM-A2D9-01 3 31725491 31725491 C G OSBPL10 Missense_Mutation p.R454T 0.18 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 3 36869721 36869721 G C TRANK1 3'UTR 0.12 TCGA-GM-A2D9-01 3 38627266 38627266 C T SCN5A Silent p.E901E 0.27 TCGA-GM-A2D9-01 3 48557223 48557223 C T PFKFB4 Missense_Mutation p.R456K 0.27 possibly_damaging(0.867) TCGA-GM-A2D9-01 3 49690512 49690512 C T BSN Missense_Mutation p.P1175S 0.19 unknown(0) TCGA-GM-A2D9-01 3 49690519 49690519 C T BSN Missense_Mutation p.S1177F 0.20 unknown(0) TCGA-GM-A2D9-01 3 51392451 51392451 C G DOCK3 Missense_Mutation p.Q1416E 0.20 deleterious(0.03) benign(0.101) TCGA-GM-A2D9-01 3 51978111 51978111 G C PARP3 Missense_Mutation p.E71Q 0.21 tolerated(0.07) benign(0.426) TCGA-GM-A2D9-01 3 54958790 54958790 G A LRTM1 Nonsense_Mutation p.Q154* 0.27 TCGA-GM-A2D9-01 3 57302511 57302511 A C APPL1 Missense_Mutation p.E660A 0.40 tolerated(0.13) benign(0.083) TCGA-GM-A2D9-01 3 9034672 9034672 C T SRGAP3 Missense_Mutation p.D826N 0.17 deleterious(0.04) benign(0.322) TCGA-GM-A2D9-01 3 9882290 9882290 C A RPUSD3 Missense_Mutation p.D176Y 0.08 tolerated(0.32) benign(0.008) TCGA-GM-A2D9-01 4 100472076 100472076 C G TRMT10A Missense_Mutation p.K239N 0.10 deleterious(0.01) possibly_damaging(0.643) TCGA-GM-A2D9-01 4 106510538 106510538 C T ARHGEF38 Silent p.L110L 0.18 TCGA-GM-A2D9-01 4 113538848 113538848 C G C4orf21 Missense_Mutation p.E784Q 0.09 tolerated(0.06) benign(0.125) TCGA-GM-A2D9-01 4 114277636 114277636 C T ANK2 Missense_Mutation p.S2621F 0.11 possibly_damaging(0.459) TCGA-GM-A2D9-01 4 120473721 120473721 C T PDE5A Silent p.K460K 0.15 TCGA-GM-A2D9-01 4 129003346 129003346 C T LARP1B Missense_Mutation p.H82Y 0.18 deleterious(0.02) possibly_damaging(0.703) TCGA-GM-A2D9-01 4 140281748 140281748 G C NAA15 Missense_Mutation p.G502A 0.08 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 4 140432838 140432838 G A SETD7 Silent p.F360F 0.24 TCGA-GM-A2D9-01 4 153251995 153251995 C T FBXW7 Silent p.K337K 0.25 TCGA-GM-A2D9-01 4 177032810 177032810 G A WDR17 Missense_Mutation p.D51N 0.33 tolerated(0.2) benign(0.333) TCGA-GM-A2D9-01 4 1823911 1823911 C G LETM1 Missense_Mutation p.L535F 0.33 tolerated(0.05) possibly_damaging(0.522) TCGA-GM-A2D9-01 4 2259733 2259733 G A MXD4 Missense_Mutation p.S57L 0.24 deleterious(0) possibly_damaging(0.876) TCGA-GM-A2D9-01 4 38945207 38945207 G A FAM114A1 3'UTR 0.13 TCGA-GM-A2D9-01 4 47938695 47938695 C G CNGA1 Missense_Mutation p.D675H 0.12 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 4 54966574 54966574 G A GSX2 Silent p.S21S 0.32 TCGA-GM-A2D9-01 4 56883842 56883842 C G CEP135 Missense_Mutation p.S944C 0.32 deleterious(0.01) probably_damaging(0.936) TCGA-GM-A2D9-01 4 79366729 79366729 C G FRAS1 Missense_Mutation p.Q1907E 0.19 benign(0.027) TCGA-GM-A2D9-01 4 870398 870398 C T GAK Splice_Site p.X659_splice 0.25 TCGA-GM-A2D9-01 5 100238609 100238609 C T ST8SIA4 Silent p.L17L 0.27 TCGA-GM-A2D9-01 5 118835232 118835232 C T HSD17B4 Missense_Mutation p.S423L 0.53 deleterious(0.05) benign(0.022) TCGA-GM-A2D9-01 5 1201909 1201909 C T SLC6A19 Silent p.F48F 0.14 TCGA-GM-A2D9-01 5 121786552 121786552 G A SNCAIP Silent p.L670L 0.23 TCGA-GM-A2D9-01 5 132535173 132535173 C G FSTL4 Missense_Mutation p.E715Q 0.22 tolerated(0.41) benign(0.197) TCGA-GM-A2D9-01 5 136320887 136320887 G A SPOCK1 Silent p.L311L 0.29 TCGA-GM-A2D9-01 5 137681206 137681206 G A FAM53C Missense_Mutation p.D277N 0.31 tolerated(0.47) possibly_damaging(0.908) TCGA-GM-A2D9-01 5 138738367 138738367 C T SPATA24 Missense_Mutation p.E45K 0.12 tolerated(0.09) benign(0.325) TCGA-GM-A2D9-01 5 139947420 139947420 C G SLC35A4 Silent p.L222L 0.10 TCGA-GM-A2D9-01 5 140201780 140201780 C T PCDHA5 Silent p.F140F 0.32 TCGA-GM-A2D9-01 5 140720804 140720804 G A PCDHGA2 Missense_Mutation p.E756K 0.26 deleterious_low_confidence(0) benign(0.201) TCGA-GM-A2D9-01 5 140856824 140856824 G A PCDHGC3 Missense_Mutation p.A381T 0.21 deleterious(0.03) benign(0.009) TCGA-GM-A2D9-01 5 149504344 149504344 G A PDGFRB Missense_Mutation p.H620Y 0.44 tolerated(1) benign(0.071) TCGA-GM-A2D9-01 5 16758256 16758256 G A MYO10 Missense_Mutation p.R607W 0.05 deleterious(0) possibly_damaging(0.907) TCGA-GM-A2D9-01 5 167944845 167944845 G A RARS Missense_Mutation p.D551N 0.22 tolerated(0.12) benign(0.007) TCGA-GM-A2D9-01 5 176793213 176793213 G A RGS14 Missense_Mutation p.E35K 0.24 tolerated(0.38) benign(0.043) TCGA-GM-A2D9-01 5 176938745 176938745 C T DDX41 3'UTR 0.24 TCGA-GM-A2D9-01 5 178359683 178359683 C T ZFP2 Nonsense_Mutation p.Q457* 0.24 TCGA-GM-A2D9-01 5 178416390 178416390 G A GRM6 Silent p.F343F 0.09 TCGA-GM-A2D9-01 5 179016646 179016646 G C RUFY1 Missense_Mutation p.E376Q 0.30 deleterious(0.05) probably_damaging(0.997) TCGA-GM-A2D9-01 5 32235093 32235093 G A MTMR12 Missense_Mutation p.S496L 0.17 deleterious(0) probably_damaging(0.948) TCGA-GM-A2D9-01 5 37125442 37125442 C T C5orf42 Missense_Mutation p.M2900I 0.19 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 5 38949951 38949951 C T RICTOR Silent p.L1333L 0.16 TCGA-GM-A2D9-01 5 41057220 41057220 G C MROH2B Missense_Mutation p.L304V 0.20 tolerated(0.06) benign(0.437) TCGA-GM-A2D9-01 5 54579457 54579457 C G DHX29 Missense_Mutation p.K513N 0.23 tolerated(0.26) benign(0.003) TCGA-GM-A2D9-01 5 55042047 55042047 C G DDX4 Nonsense_Mutation p.S42* 0.09 TCGA-GM-A2D9-01 5 56160759 56160759 C T MAP3K1 Nonsense_Mutation p.Q345* 0.11 TCGA-GM-A2D9-01 5 65310496 65310496 G C ERBB2IP Splice_Site p.X159_splice 0.21 TCGA-GM-A2D9-01 5 71521974 71521974 C T MRPS27 Silent p.L249L 0.18 TCGA-GM-A2D9-01 5 79286036 79286036 C T MTX3 5'UTR 0.07 TCGA-GM-A2D9-01 5 94987967 94987967 G A RFESD 5'UTR 0.14 TCGA-GM-A2D9-01 5 95128768 95128768 G A RHOBTB3 Missense_Mutation p.E576K 0.22 deleterious(0.02) benign(0.415) TCGA-GM-A2D9-01 6 128302332 128302332 C T PTPRK Missense_Mutation p.D1220N 0.38 deleterious(0) probably_damaging(0.994) TCGA-GM-A2D9-01 6 131188606 131188606 G C EPB41L2 Missense_Mutation p.S908C 0.24 deleterious(0) possibly_damaging(0.65) TCGA-GM-A2D9-01 6 151130863 151130863 C T PLEKHG1 Missense_Mutation p.P424L 0.26 deleterious(0.01) benign(0.12) TCGA-GM-A2D9-01 6 152674496 152674496 C G SYNE1 Missense_Mutation p.D3719H 0.17 benign(0.062) TCGA-GM-A2D9-01 6 152720748 152720748 C T SYNE1 Intron 0.21 TCGA-GM-A2D9-01 6 152722302 152722302 C T SYNE1 Missense_Mutation p.E2334K 0.12 benign(0.001) TCGA-GM-A2D9-01 6 152722377 152722377 C G SYNE1 Missense_Mutation p.V2309L 0.18 benign(0.001) TCGA-GM-A2D9-01 6 158923524 158923524 G T TULP4 Silent p.L943L 0.29 TCGA-GM-A2D9-01 6 159029694 159029694 G A TMEM181 Missense_Mutation p.E407K 0.07 tolerated(0.08) possibly_damaging(0.705) TCGA-GM-A2D9-01 6 159651012 159651012 C T FNDC1 Missense_Mutation p.A449V 0.10 deleterious(0.01) unknown(0) TCGA-GM-A2D9-01 6 159654134 159654134 C T FNDC1 Missense_Mutation p.H864Y 0.14 tolerated_low_confidence(0.23) unknown(0) TCGA-GM-A2D9-01 6 160579685 160579685 C T SLC22A1 3'UTR 0.38 TCGA-GM-A2D9-01 6 166952216 166952216 C T RPS6KA2 Silent p.E60E 0.19 TCGA-GM-A2D9-01 6 26428955 26428955 C G BTN2A3P RNA 0.27 TCGA-GM-A2D9-01 6 33660546 33660546 C T ITPR3 Silent p.F2500F 0.06 TCGA-GM-A2D9-01 6 36359517 36359517 G T PXT1 3'UTR 0.28 TCGA-GM-A2D9-01 6 42612220 42612220 C T UBR2 Nonsense_Mutation p.Q744* 0.10 TCGA-GM-A2D9-01 6 46847672 46847672 C G GPR116 Missense_Mutation p.E307Q 0.19 tolerated(0.32) benign(0.102) TCGA-GM-A2D9-01 6 52133960 52133960 G A MCM3 Missense_Mutation p.A676V 0.34 tolerated(0.18) benign(0.049) TCGA-GM-A2D9-01 6 52134018 52134018 G C MCM3 Missense_Mutation p.P657A 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-GM-A2D9-01 6 52369549 52369549 G T TRAM2 Silent p.L293L 0.35 TCGA-GM-A2D9-01 6 572591 572591 G A EXOC2 Missense_Mutation p.L458F 0.41 deleterious(0.02) probably_damaging(0.969) TCGA-GM-A2D9-01 6 75902030 75902030 C T COL12A1 Missense_Mutation p.E78K 0.06 benign(0.111) TCGA-GM-A2D9-01 6 78172587 78172587 G C HTR1B Missense_Mutation p.I178M 0.28 deleterious(0) possibly_damaging(0.824) TCGA-GM-A2D9-01 6 97679501 97679501 G A MMS22L Missense_Mutation p.P444S 0.30 tolerated(0.18) probably_damaging(0.998) TCGA-GM-A2D9-01 7 107708601 107708601 C T LAMB4 Missense_Mutation p.C769Y 0.50 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 7 107823305 107823305 C G NRCAM Missense_Mutation p.Q788H 0.43 deleterious(0) probably_damaging(0.996) TCGA-GM-A2D9-01 7 120884363 120884363 C G CPED1 Missense_Mutation p.Q761E 0.15 tolerated(0.86) benign(0.01) TCGA-GM-A2D9-01 7 130038687 130038687 C T CEP41 3'UTR 0.21 TCGA-GM-A2D9-01 7 138739960 138739960 C G ZC3HAV1 Missense_Mutation p.K726N 0.33 tolerated(1) benign(0) TCGA-GM-A2D9-01 7 141773951 141773951 C T MGAM Intron 0.21 TCGA-GM-A2D9-01 7 142364214 142364214 C T TRBV24-1 5'UTR 0.17 TCGA-GM-A2D9-01 7 143701864 143701864 C T OR6B1 Nonsense_Mutation p.R259* 0.38 TCGA-GM-A2D9-01 7 149129739 149129739 C T ZNF777 Missense_Mutation p.G542S 0.44 tolerated(0.18) benign(0.231) TCGA-GM-A2D9-01 7 1855779 1855779 C T MAD1L1 Missense_Mutation p.R695Q 0.20 tolerated(0.41) benign(0.001) TCGA-GM-A2D9-01 7 21521552 21521552 G A SP4 Missense_Mutation p.E640K 0.16 tolerated(0.23) benign(0.205) TCGA-GM-A2D9-01 7 2265141 2265141 G C MAD1L1 Missense_Mutation p.I65M 0.05 deleterious(0.02) possibly_damaging(0.878) TCGA-GM-A2D9-01 7 26237349 26237349 C T HNRNPA2B1 Missense_Mutation p.E16K 0.17 deleterious(0.01) benign(0.397) TCGA-GM-A2D9-01 7 2770892 2770892 C T GNA12 Missense_Mutation p.E357K 0.13 deleterious(0.04) probably_damaging(0.939) TCGA-GM-A2D9-01 7 36446159 36446159 C G ANLN Nonsense_Mutation p.S286* 0.28 TCGA-GM-A2D9-01 7 36450208 36450208 C A ANLN Silent p.P394P 0.21 TCGA-GM-A2D9-01 7 43846647 43846647 C G BLVRA Missense_Mutation p.S235C 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-GM-A2D9-01 7 44157539 44157539 C G POLD2 Intron 0.16 TCGA-GM-A2D9-01 7 47342615 47342615 G A TNS3 Silent p.I1130I 0.36 TCGA-GM-A2D9-01 7 48556398 48556398 C T ABCA13 Missense_Mutation p.S4573L 0.19 probably_damaging(1) TCGA-GM-A2D9-01 7 65579853 65579853 G A CRCP 5'UTR 0.08 TCGA-GM-A2D9-01 7 6731836 6731836 G C ZNF12 Missense_Mutation p.S246C 0.15 tolerated(1) benign(0.009) TCGA-GM-A2D9-01 7 92848495 92848495 C T HEPACAM2 Missense_Mutation p.E117K 0.25 deleterious(0.05) probably_damaging(1) TCGA-GM-A2D9-01 7 96649938 96649938 G A DLX5 3'UTR 0.23 TCGA-GM-A2D9-01 8 124117616 124117616 G A TBC1D31 Missense_Mutation p.R374K 0.33 tolerated(0.25) benign(0.002) TCGA-GM-A2D9-01 8 124358470 124358470 C T ATAD2 Silent p.L796L 0.21 TCGA-GM-A2D9-01 8 133650195 133650195 G A LRRC6 Missense_Mutation p.L139F 0.37 deleterious(0) probably_damaging(0.997) TCGA-GM-A2D9-01 8 143740456 143740456 G C JRK RNA 0.14 TCGA-GM-A2D9-01 8 143958628 143958628 C G CYP11B1 Missense_Mutation p.E136Q 0.19 tolerated(0.05) benign(0.344) TCGA-GM-A2D9-01 8 143994090 143994090 C G CYP11B2 Silent p.P418P 0.11 TCGA-GM-A2D9-01 8 145246615 145246615 C G MROH1 Intron 0.17 TCGA-GM-A2D9-01 8 15998430 15998430 G A MSR1 Intron 0.58 TCGA-GM-A2D9-01 8 22476366 22476366 G - CCAR2 Frame_Shift_Del p.S789Afs*21 0.32 TCGA-GM-A2D9-01 8 41553930 41553930 G A ANK1 Silent p.L1012L 0.21 TCGA-GM-A2D9-01 8 55540971 55540971 C G RP1 Missense_Mutation p.S1510C 0.20 deleterious(0) possibly_damaging(0.728) TCGA-GM-A2D9-01 8 67341415 67341415 G A RRS1 Missense_Mutation p.E17K 0.20 tolerated(0.21) benign(0.047) TCGA-GM-A2D9-01 8 72754930 72754930 G A MSC Missense_Mutation p.S196F 0.34 tolerated(0.07) benign(0.017) TCGA-GM-A2D9-01 8 90965489 90965489 C T NBN Missense_Mutation p.E610K 0.24 tolerated(0.1) benign(0.03) TCGA-GM-A2D9-01 8 99042743 99042743 G C MATN2 Missense_Mutation p.E804Q 0.07 tolerated(0.13) probably_damaging(0.962) TCGA-GM-A2D9-01 9 111625619 111625619 C T ACTL7A Silent p.T339T 0.27 TCGA-GM-A2D9-01 9 111727666 111727666 C T CTNNAL1 Missense_Mutation p.G528E 0.15 deleterious(0) probably_damaging(0.979) TCGA-GM-A2D9-01 9 130242133 130242133 G A LRSAM1 Missense_Mutation p.E307K 0.30 deleterious(0) benign(0.201) TCGA-GM-A2D9-01 9 131711513 131711513 G C RP11-101E3.5 Silent p.L47L 0.27 TCGA-GM-A2D9-01 9 131765659 131765659 G A NUP188 Missense_Mutation p.G1454S 0.25 tolerated(0.37) probably_damaging(0.985) TCGA-GM-A2D9-01 9 131771580 131771580 G C SH3GLB2 Silent p.P295P 0.36 TCGA-GM-A2D9-01 9 13190232 13190232 C G MPDZ Missense_Mutation p.D679H 0.33 deleterious(0.01) possibly_damaging(0.622) TCGA-GM-A2D9-01 9 13222363 13222363 T C MPDZ Missense_Mutation p.I206V 0.24 tolerated(0.1) benign(0.024) TCGA-GM-A2D9-01 9 132665165 132665165 C T FNBP1 Missense_Mutation p.E471K 0.07 deleterious(0) possibly_damaging(0.827) TCGA-GM-A2D9-01 9 136266896 136266896 C T C9orf96 Missense_Mutation p.P410S 0.17 tolerated(0.22) benign(0.01) TCGA-GM-A2D9-01 9 139972970 139972970 G A UAP1L1 Missense_Mutation p.E171K 0.19 tolerated(0.07) probably_damaging(0.987) TCGA-GM-A2D9-01 9 140622823 140622823 G C EHMT1 Missense_Mutation p.R222T 0.10 tolerated_low_confidence(0.14) benign(0.344) TCGA-GM-A2D9-01 9 140672487 140672487 C T EHMT1 Silent p.L724L 0.25 TCGA-GM-A2D9-01 9 14857618 14857618 G A FREM1 Missense_Mutation p.S254L 0.13 deleterious(0) probably_damaging(0.98) TCGA-GM-A2D9-01 9 15591381 15591381 C G CCDC171 Missense_Mutation p.Q124E 0.19 deleterious(0) benign(0.346) TCGA-GM-A2D9-01 9 2097429 2097429 G A SMARCA2 Silent p.L1012L 0.27 TCGA-GM-A2D9-01 9 21333243 21333243 C T KLHL9 Missense_Mutation p.G539E 0.06 deleterious(0) probably_damaging(1) TCGA-GM-A2D9-01 9 27209201 27209201 C G TEK Missense_Mutation p.I886M 0.22 deleterious(0) probably_damaging(0.997) TCGA-GM-A2D9-01 9 35870329 35870329 C T OR13J1 Missense_Mutation p.E24K 0.21 deleterious(0.03) benign(0.025) TCGA-GM-A2D9-01 9 6330015 6330015 G A TPD52L3 3'UTR 0.24 TCGA-GM-A2D9-01 9 6506202 6506202 T C UHRF2 3'UTR 0.22 TCGA-GM-A2D9-01 9 6984402 6984402 C T KDM4C Missense_Mutation p.S451L 0.26 tolerated(0.13) benign(0.075) TCGA-GM-A2D9-01 9 72939002 72939002 G A SMC5 Silent p.E780E 0.11 TCGA-GM-A2D9-01 X 100617649 100617649 C T BTK Silent p.Q140Q 0.20 TCGA-GM-A2D9-01 X 100667111 100667111 C T HNRNPH2 Silent p.F45F 0.09 TCGA-GM-A2D9-01 X 101091732 101091732 G A NXF5 Intron 0.38 TCGA-GM-A2D9-01 X 102931367 102931367 G A MORF4L2 Nonsense_Mutation p.Q197* 0.14 TCGA-GM-A2D9-01 X 107400447 107400447 G T COL4A6 Nonsense_Mutation p.S1620* 0.17 TCGA-GM-A2D9-01 X 107840778 107840778 C T COL4A5 Missense_Mutation p.P587S 0.34 unknown(0) TCGA-GM-A2D9-01 X 117770339 117770339 C T DOCK11 Missense_Mutation p.S1306L 0.14 tolerated(0.1) benign(0.122) TCGA-GM-A2D9-01 X 119211054 119211054 G T RHOXF2B Missense_Mutation p.N93K 0.23 tolerated(0.33) benign(0.432) TCGA-GM-A2D9-01 X 119691810 119691810 G A CUL4B Missense_Mutation p.S232L 0.07 deleterious(0.01) benign(0.39) TCGA-GM-A2D9-01 X 122598762 122598762 C T GRIA3 Missense_Mutation p.S708L 0.16 deleterious(0) possibly_damaging(0.85) TCGA-GM-A2D9-01 X 128615063 128615063 T A SMARCA1 Nonsense_Mutation p.K773* 0.10 TCGA-GM-A2D9-01 X 131762563 131762563 C T HS6ST2 Missense_Mutation p.M542I 0.25 tolerated_low_confidence(0.05) probably_damaging(0.968) TCGA-GM-A2D9-01 X 134185808 134185808 C T FAM127B Missense_Mutation p.E111K 0.28 tolerated_low_confidence(0.11) benign(0.059) TCGA-GM-A2D9-01 X 140270786 140270786 C T LDOC1 Missense_Mutation p.E141K 0.20 deleterious_low_confidence(0) unknown(0) TCGA-GM-A2D9-01 X 148568837 148568837 G A IDS Intron 0.23 TCGA-GM-A2D9-01 X 152014897 152014897 G A NSDHL Missense_Mutation p.R10K 0.22 tolerated_low_confidence(0.82) benign(0.001) TCGA-GM-A2D9-01 X 153695461 153695461 C T PLXNA3 Missense_Mutation p.R1057C 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-GM-A2D9-01 X 154012325 154012325 C G MPP1 Missense_Mutation p.K281N 0.31 tolerated(0.1) benign(0.073) TCGA-GM-A2D9-01 X 18842151 18842151 G A PPEF1 Missense_Mutation p.V538I 0.30 tolerated(0.3) benign(0.021) TCGA-GM-A2D9-01 X 24690763 24690763 C G PCYT1B 5'UTR 0.05 TCGA-GM-A2D9-01 X 46521524 46521524 G A SLC9A7 Missense_Mutation p.S323L 0.28 deleterious(0) benign(0.378) TCGA-GM-A2D9-01 X 46917620 46917620 G C JADE3 Missense_Mutation p.R538T 0.13 deleterious(0) probably_damaging(0.999) TCGA-GM-A2D9-01 X 47104784 47104784 G A USP11 Missense_Mutation p.D768N 0.32 tolerated(0.19) benign(0.297) TCGA-GM-A2D9-01 X 53589161 53589161 G C HUWE1 Missense_Mutation p.Q2417E 0.24 benign(0.042) TCGA-GM-A2D9-01 X 63444781 63444781 G A ASB12 Silent p.I250I 0.10 TCGA-GM-A2D9-01 X 68725797 68725797 G A FAM155B Silent p.L224L 0.27 TCGA-GM-A2D9-01 X 70145659 70145659 G A SLC7A3 3'UTR 0.20 TCGA-GM-A2D9-01 X 84510489 84510489 G A ZNF711 Missense_Mutation p.E102K 0.29 tolerated(0.17) possibly_damaging(0.781) TCGA-GM-A2D9-01 X 91090885 91090885 C T PCDH11X Silent p.L128L 0.40 TCGA-GM-A2D9-01 X 92926894 92926894 C T NAP1L3 Silent p.Q470Q 0.08 TCGA-GM-A2D9-01 X 99662816 99662816 G A PCDH19 Silent p.L260L 0.09 TCGA-GM-A2DA-01 10 97007096 97007096 G C PDLIM1 Missense_Mutation p.S187R 0.38 tolerated(0.57) benign(0) TCGA-GM-A2DA-01 11 100812591 100812591 A G ARHGAP42 Silent p.S303S 0.25 TCGA-GM-A2DA-01 11 113570327 113570327 T G TMPRSS5 Silent p.S65S 0.17 TCGA-GM-A2DA-01 11 120317216 120317216 C T ARHGEF12 Missense_Mutation p.R484W 0.24 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DA-01 11 6569630 6569630 C G DNHD1 Missense_Mutation p.Q2366E 0.22 benign(0.429) TCGA-GM-A2DA-01 12 113435385 113435385 G A OAS2 Missense_Mutation p.V230M 0.35 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DA-01 12 129189746 129189746 G A TMEM132C Missense_Mutation p.V745M 0.18 deleterious(0) probably_damaging(0.95) TCGA-GM-A2DA-01 12 4458991 4458991 C A C12orf5 Missense_Mutation p.H67N 0.21 tolerated(0.31) benign(0.044) TCGA-GM-A2DA-01 12 4737717 4737717 G A AKAP3 Silent p.N117N 0.30 TCGA-GM-A2DA-01 14 21869629 21869629 T A CHD8 Missense_Mutation p.D1369V 0.23 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DA-01 14 93178044 93178044 G A LGMN Missense_Mutation p.S260L 0.26 tolerated(0.06) benign(0.098) TCGA-GM-A2DA-01 15 56208672 56208672 C A NEDD4 Missense_Mutation p.D120Y 0.21 deleterious_low_confidence(0) benign(0.237) TCGA-GM-A2DA-01 17 26962549 26962549 G C KIAA0100 Missense_Mutation p.L686V 0.87 tolerated(0.1) benign(0.276) TCGA-GM-A2DA-01 18 31319840 31319840 G A ASXL3 Silent p.P824P 0.28 TCGA-GM-A2DA-01 19 48869094 48869094 G A SYNGR4 5'UTR 0.30 TCGA-GM-A2DA-01 19 58850657 58850657 G T ZSCAN22 Missense_Mutation p.V481F 0.37 tolerated(0.15) benign(0.121) TCGA-GM-A2DA-01 19 8961960 8961960 C T MUC16 Missense_Mutation p.G14473S 0.25 possibly_damaging(0.675) TCGA-GM-A2DA-01 1 152324992 152324992 C G FLG2 Missense_Mutation p.G1757A 0.05 possibly_damaging(0.794) TCGA-GM-A2DA-01 1 201282596 201282596 G A PKP1 Silent p.P203P 0.30 TCGA-GM-A2DA-01 1 50907189 50907189 G A FAF1 Nonsense_Mutation p.Q626* 0.17 TCGA-GM-A2DA-01 20 31692615 31692615 G T BPIFB4 Splice_Site p.X561_splice 0.26 TCGA-GM-A2DA-01 20 42271138 42271138 A G IFT52 Silent p.E380E 0.20 TCGA-GM-A2DA-01 2 10560114 10560114 C T HPCAL1 Silent p.D77D 0.32 TCGA-GM-A2DA-01 2 135848655 135848655 G A RAB3GAP1 Missense_Mutation p.V80I 0.32 tolerated(0.33) benign(0.044) TCGA-GM-A2DA-01 2 15613397 15613397 C T NBAS Silent p.Q558Q 0.10 TCGA-GM-A2DA-01 2 219868883 219868887 TTCTT - CCDC108 Frame_Shift_Del p.E1781Gfs*22 0.44 TCGA-GM-A2DA-01 3 20193909 20193910 - A KAT2B Frame_Shift_Ins p.N798Kfs*9 0.32 TCGA-GM-A2DA-01 3 44803150 44803150 G C KIAA1143 5'UTR 0.16 TCGA-GM-A2DA-01 4 87028414 87028414 G C MAPK10 Missense_Mutation p.R110G 0.32 deleterious(0) probably_damaging(1) TCGA-GM-A2DA-01 5 134782379 134782379 C T C5orf20 Silent p.P140P 0.25 TCGA-GM-A2DA-01 5 140229323 140229323 C T PCDHA9 Missense_Mutation p.R415C 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.479) TCGA-GM-A2DA-01 5 157166415 157166415 A T THG1L Silent p.P274P 0.29 TCGA-GM-A2DA-01 5 37187668 37187668 C T C5orf42 Missense_Mutation p.E1310K 0.23 tolerated(0.39) benign(0.008) TCGA-GM-A2DA-01 6 139097295 139097295 C G CCDC28A Missense_Mutation p.S103C 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-GM-A2DA-01 6 76596584 76596584 G A MYO6 Missense_Mutation p.G844D 0.21 tolerated(0.36) unknown(0) TCGA-GM-A2DA-01 6 88375529 88375529 G A ORC3 Missense_Mutation p.E671K 0.19 tolerated(0.83) benign(0.015) TCGA-GM-A2DA-01 7 100676392 100676392 T C MUC17 Silent p.P565P 0.23 TCGA-GM-A2DA-01 8 105510194 105510194 C T LRP12 Missense_Mutation p.D196N 0.34 deleterious(0.02) probably_damaging(1) TCGA-GM-A2DA-01 8 24775238 24775238 G C NEFM Missense_Mutation p.E624Q 0.08 deleterious(0.01) benign(0.253) TCGA-GM-A2DA-01 8 95183115 95183115 C A CDH17 Silent p.V294V 0.32 TCGA-GM-A2DA-01 9 127549306 127549306 G A OLFML2A Missense_Mutation p.R48H 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-GM-A2DA-01 X 107939659 107939659 A T COL4A5 3'UTR 0.15 TCGA-GM-A2DA-01 X 118242316 118242316 C T KIAA1210 Missense_Mutation p.G299D 0.13 tolerated(0.2) benign(0.028) TCGA-GM-A2DA-01 X 138724769 138724769 C T MCF2 Intron 0.28 TCGA-GM-A2DA-01 X 147743964 147743964 C T AFF2 Missense_Mutation p.P239L 0.41 deleterious(0) benign(0.035) TCGA-GM-A2DA-01 X 149013947 149013947 C T MAGEA8 Missense_Mutation p.R301C 0.33 deleterious(0.02) possibly_damaging(0.62) TCGA-GM-A2DA-01 X 19008967 19008967 T A GPR64 3'UTR 0.29 TCGA-GM-A2DB-01 10 124273729 124273729 G A HTRA1 Missense_Mutation p.V433I 0.23 tolerated(0.46) benign(0.114) TCGA-GM-A2DB-01 10 124800027 124800027 T C ACADSB Missense_Mutation p.S117P 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-GM-A2DB-01 10 26994243 26994244 AC - PDSS1 Frame_Shift_Del p.H87Qfs*3 0.10 TCGA-GM-A2DB-01 10 68940239 68940239 C A CTNNA3 Nonsense_Mutation p.E295* 0.09 TCGA-GM-A2DB-01 10 89624279 89624280 - G PTEN Frame_Shift_Ins p.D19Gfs*25 0.25 TCGA-GM-A2DB-01 10 89692935 89692935 T G PTEN Nonsense_Mutation p.L140* 0.22 TCGA-GM-A2DB-01 11 118963868 118963869 - GT HMBS Frame_Shift_Ins p.N322Vfs*23 0.18 TCGA-GM-A2DB-01 11 121477957 121477957 A T SORL1 Silent p.T1708T 0.41 TCGA-GM-A2DB-01 11 122738263 122738263 G C CRTAM Missense_Mutation p.E322Q 0.20 deleterious(0) probably_damaging(0.976) TCGA-GM-A2DB-01 11 2161414 2161414 C T IGF2 Missense_Mutation p.G38D 0.13 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GM-A2DB-01 11 26465319 26465319 T C ANO3 Silent p.T83T 0.08 TCGA-GM-A2DB-01 11 5068215 5068215 C T OR52J3 Missense_Mutation p.P154S 0.19 tolerated(1) probably_damaging(0.911) TCGA-GM-A2DB-01 11 57076575 57076577 TCA - TNKS1BP1 In_Frame_Del p.M1203del 0.16 TCGA-GM-A2DB-01 11 57982678 57982678 C A OR1S1 Silent p.G154G 0.09 TCGA-GM-A2DB-01 11 581501 581502 - AA PHRF1 5'UTR 0.11 TCGA-GM-A2DB-01 11 62652967 62652967 T G SLC3A2 Missense_Mutation p.L446V 0.39 tolerated(1) benign(0.001) TCGA-GM-A2DB-01 11 64799979 64799979 G A SNX15 Missense_Mutation p.R71H 0.11 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DB-01 11 68205945 68205945 G A LRP5 Silent p.P1381P 0.14 TCGA-GM-A2DB-01 11 78614525 78614525 C T TENM4 Silent p.P179P 0.12 TCGA-GM-A2DB-01 11 8060486 8060486 C T TUB Silent p.F22F 0.09 TCGA-GM-A2DB-01 12 114804031 114804031 T A TBX5 Silent p.P307P 0.16 TCGA-GM-A2DB-01 12 12496115 12496116 AG - MANSC1 Frame_Shift_Del p.L45Ffs*2 0.23 TCGA-GM-A2DB-01 12 125396335 125396337 TCC - UBC In_Frame_Del p.G661del 0.32 TCGA-GM-A2DB-01 12 130839528 130839528 C T PIWIL1 Nonsense_Mutation p.R423* 0.12 TCGA-GM-A2DB-01 12 4796293 4796293 T C NDUFA9 3'UTR 0.17 TCGA-GM-A2DB-01 12 83250926 83250926 G A TMTC2 Missense_Mutation p.R74H 0.13 deleterious(0) probably_damaging(0.932) TCGA-GM-A2DB-01 13 103386366 103386366 G C CCDC168 Missense_Mutation p.P932A 0.29 tolerated(0.97) possibly_damaging(0.728) TCGA-GM-A2DB-01 13 113914970 113914970 A G CUL4A Missense_Mutation p.Y694C 0.19 deleterious(0.02) possibly_damaging(0.613) TCGA-GM-A2DB-01 13 46549769 46549770 TC - ZC3H13 Frame_Shift_Del p.E706Tfs*7 0.19 TCGA-GM-A2DB-01 14 102963379 102963379 G C TECPR2 Missense_Mutation p.D1285H 0.16 deleterious(0) probably_damaging(0.98) TCGA-GM-A2DB-01 14 23299133 23299133 A T MRPL52 Missense_Mutation p.L4F 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.765) TCGA-GM-A2DB-01 14 30108065 30108065 T C PRKD1 Missense_Mutation p.N248D 0.12 tolerated(0.32) benign(0.09) TCGA-GM-A2DB-01 14 39517903 39517903 C T SEC23A Missense_Mutation p.D564N 0.13 deleterious(0.04) possibly_damaging(0.785) TCGA-GM-A2DB-01 14 45473547 45473547 T A FAM179B Silent p.S874S 0.18 TCGA-GM-A2DB-01 14 72190560 72190560 C A SIPA1L1 Missense_Mutation p.P1490T 0.10 tolerated(0.16) probably_damaging(0.991) TCGA-GM-A2DB-01 15 51991585 51991585 G T SCG3 Missense_Mutation p.S352I 0.21 tolerated_low_confidence(0.06) benign(0.299) TCGA-GM-A2DB-01 15 63358258 63358258 T - TPM1 Intron 0.20 TCGA-GM-A2DB-01 16 58030938 58030938 G A ZNF319 Missense_Mutation p.S411F 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-GM-A2DB-01 16 67690189 67690190 CT - RLTPR Frame_Shift_Del p.S1268Cfs*4 0.19 TCGA-GM-A2DB-01 16 72110499 72110499 T C HPR Missense_Mutation p.I189T 0.15 deleterious(0) possibly_damaging(0.864) TCGA-GM-A2DB-01 16 81953183 81953183 G A PLCG2 Missense_Mutation p.V717I 0.12 tolerated(0.35) probably_damaging(0.998) TCGA-GM-A2DB-01 16 85689441 85689441 G A GSE1 Missense_Mutation p.G303R 0.20 deleterious(0) unknown(0) TCGA-GM-A2DB-01 17 17699094 17699095 CT - RAI1 Frame_Shift_Del p.L946Vfs*7 0.35 TCGA-GM-A2DB-01 17 30354847 30354847 A C LRRC37B Missense_Mutation p.Y604S 0.09 tolerated(1) benign(0) TCGA-GM-A2DB-01 17 40837256 40837256 A G CNTNAP1 Missense_Mutation p.D178G 0.14 deleterious(0) possibly_damaging(0.724) TCGA-GM-A2DB-01 17 53471680 53471680 A T MMD 3'UTR 0.29 TCGA-GM-A2DB-01 17 7217257 7217258 CT - GPS2 Frame_Shift_Del p.R149Sfs*56 0.34 TCGA-GM-A2DB-01 17 73484866 73484866 G A KIAA0195 Silent p.P213P 0.38 TCGA-GM-A2DB-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.31 TCGA-GM-A2DB-01 17 7733717 7733718 CT - DNAH2 Frame_Shift_Del p.C3986Ffs*8 0.40 TCGA-GM-A2DB-01 18 10677791 10677791 G A PIEZO2 Silent p.I2565I 0.06 TCGA-GM-A2DB-01 18 67843941 67843941 T C RTTN Silent p.R482R 0.10 TCGA-GM-A2DB-01 18 9954080 9954080 C G VAPA Missense_Mutation p.H253D 0.26 tolerated(0.41) benign(0.352) TCGA-GM-A2DB-01 19 23544004 23544004 T A ZNF91 Nonsense_Mutation p.K593* 0.12 TCGA-GM-A2DB-01 19 36110654 36110654 C T HAUS5 Missense_Mutation p.P467L 0.13 tolerated(0.46) possibly_damaging(0.61) TCGA-GM-A2DB-01 19 49140184 49140184 G - DBP Frame_Shift_Del p.P23Lfs*27 0.44 TCGA-GM-A2DB-01 19 52496796 52496796 G C ZNF615 Silent p.P522P 0.16 TCGA-GM-A2DB-01 19 52497414 52497417 ATAA - ZNF615 Frame_Shift_Del p.Y316Ifs*78 0.12 TCGA-GM-A2DB-01 19 55341888 55341888 T C KIR3DL1 3'UTR 0.10 TCGA-GM-A2DB-01 1 119962135 119962135 C G HSD3B2 Missense_Mutation p.I79M 0.28 deleterious(0.01) possibly_damaging(0.901) TCGA-GM-A2DB-01 1 1238550 1238550 C T ACAP3 Missense_Mutation p.V73I 0.11 tolerated(0.08) benign(0.007) TCGA-GM-A2DB-01 1 156641877 156641877 C A NES Missense_Mutation p.R701S 0.09 tolerated(0.09) benign(0.079) TCGA-GM-A2DB-01 1 161200770 161200770 C T NR1I3 Intron 0.25 TCGA-GM-A2DB-01 1 161989774 161989774 G A OLFML2B Missense_Mutation p.L125F 0.11 deleterious(0) possibly_damaging(0.824) TCGA-GM-A2DB-01 1 197112485 197112485 G T ASPM Silent p.T299T 0.32 TCGA-GM-A2DB-01 1 204085649 204085649 C A SOX13 Missense_Mutation p.L145I 0.34 deleterious(0) probably_damaging(0.986) TCGA-GM-A2DB-01 1 206153967 206153967 C A FAM72A Silent p.V122V 0.09 TCGA-GM-A2DB-01 1 209824386 209824387 TT - LAMB3 5'UTR 0.21 TCGA-GM-A2DB-01 1 23236872 23236872 C A EPHB2 Intron 0.26 TCGA-GM-A2DB-01 1 235940493 235940493 G C LYST Nonsense_Mutation p.S1777* 0.15 TCGA-GM-A2DB-01 1 242015696 242015699 AGAG - EXO1 Frame_Shift_Del p.E89Dfs*44 0.16 TCGA-GM-A2DB-01 1 2525823 2525823 C T MMEL1 Splice_Site p.X583_splice 0.08 TCGA-GM-A2DB-01 1 43240518 43240518 T G C1orf50 Nonsense_Mutation p.Y131* 0.12 TCGA-GM-A2DB-01 1 43396749 43396749 G A SLC2A1 Silent p.F81F 0.16 TCGA-GM-A2DB-01 1 47395875 47395875 A G CYP4A11 Missense_Mutation p.I491T 0.15 tolerated(0.17) benign(0.008) TCGA-GM-A2DB-01 1 70716046 70716046 A T SRSF11 Splice_Site p.X373_splice 0.11 TCGA-GM-A2DB-01 1 91404518 91404518 T C ZNF644 Missense_Mutation p.E798G 0.19 tolerated_low_confidence(0.13) benign(0.004) TCGA-GM-A2DB-01 20 13756551 13756551 C A ESF1 Nonsense_Mutation p.E335* 0.18 TCGA-GM-A2DB-01 20 62319309 62319309 G T RTEL1 Nonsense_Mutation p.E525* 0.16 TCGA-GM-A2DB-01 20 62630991 62630991 T A PRPF6 Missense_Mutation p.V301D 0.24 deleterious(0) probably_damaging(0.926) TCGA-GM-A2DB-01 20 62859285 62859285 C A MYT1 Missense_Mutation p.A879E 0.18 benign(0.334) TCGA-GM-A2DB-01 21 34955915 34955915 G A DONSON Silent p.F281F 0.11 TCGA-GM-A2DB-01 21 34955921 34955921 G T DONSON Silent p.P279P 0.11 TCGA-GM-A2DB-01 21 46271447 46271447 C T PTTG1IP 3'UTR 0.21 TCGA-GM-A2DB-01 22 19960306 19960313 AGGACTCA - ARVCF Frame_Shift_Del p.L863Rfs*5 0.24 TCGA-GM-A2DB-01 22 23959793 23959793 T A C22orf43 Missense_Mutation p.D163V 0.17 tolerated_low_confidence(0.44) benign(0.053) TCGA-GM-A2DB-01 2 182982070 182982070 A C PPP1R1C Intron 0.21 TCGA-GM-A2DB-01 2 190531309 190531309 G T ASNSD1 Missense_Mutation p.G151C 0.19 deleterious(0.02) benign(0.09) TCGA-GM-A2DB-01 2 190602503 190602503 T C ANKAR Missense_Mutation p.I1173T 0.12 deleterious(0.01) benign(0.066) TCGA-GM-A2DB-01 2 191524231 191524231 C T NAB1 Missense_Mutation p.S110F 0.17 tolerated(0.09) benign(0.188) TCGA-GM-A2DB-01 2 191894442 191894442 T C STAT4 3'UTR 0.27 TCGA-GM-A2DB-01 2 216236841 216236841 G T FN1 Missense_Mutation p.P2169T 0.20 deleterious(0.01) benign(0.341) TCGA-GM-A2DB-01 2 37456001 37456001 T C CEBPZ Missense_Mutation p.N112S 0.15 tolerated(0.52) benign(0.001) TCGA-GM-A2DB-01 2 39088759 39088759 C G DHX57 Missense_Mutation p.E265Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DB-01 2 49210108 49210108 T A FSHR Missense_Mutation p.N204I 0.30 tolerated(0.16) benign(0.004) TCGA-GM-A2DB-01 2 55253974 55253974 C G RTN4 Missense_Mutation p.D421H 0.22 deleterious(0.01) benign(0.041) TCGA-GM-A2DB-01 3 111700647 111700647 G A ABHD10 Silent p.T53T 0.15 TCGA-GM-A2DB-01 3 132051157 132051157 C T ACPP Missense_Mutation p.P142L 0.12 deleterious(0.01) probably_damaging(1) TCGA-GM-A2DB-01 3 141162042 141162042 T G ZBTB38 Missense_Mutation p.I271R 0.25 tolerated(0.68) benign(0) TCGA-GM-A2DB-01 3 166958696 166958696 C G ZBBX Missense_Mutation p.R802T 0.36 deleterious(0.02) benign(0.364) TCGA-GM-A2DB-01 3 49050384 49050384 G C WDR6 Missense_Mutation p.G503R 0.39 tolerated(0.06) probably_damaging(0.982) TCGA-GM-A2DB-01 3 52283070 52283071 TG - PPM1M Frame_Shift_Del p.V148Afs*17 0.09 TCGA-GM-A2DB-01 4 1725222 1725222 C T TACC3 Missense_Mutation p.S25L 0.24 tolerated(0.08) possibly_damaging(0.479) TCGA-GM-A2DB-01 4 57881680 57881681 AG - POLR2B Frame_Shift_Del p.D606Yfs*17 0.14 TCGA-GM-A2DB-01 5 130840456 130840456 G A RAPGEF6 Nonsense_Mutation p.Q373* 0.14 TCGA-GM-A2DB-01 5 140801206 140801206 G A PCDHGA11 Missense_Mutation p.E138K 0.12 tolerated_low_confidence(0.05) benign(0.091) TCGA-GM-A2DB-01 5 35026572 35026572 A C AGXT2 Missense_Mutation p.D271E 0.08 tolerated(0.63) benign(0.019) TCGA-GM-A2DB-01 5 70782372 70782376 AGAAG - BDP1 Frame_Shift_Del p.E379Kfs*7 0.10 TCGA-GM-A2DB-01 5 70858139 70858139 G C BDP1 Missense_Mutation p.C2512S 0.17 deleterious(0.05) probably_damaging(0.994) TCGA-GM-A2DB-01 5 74646180 74646180 A T HMGCR Missense_Mutation p.Q254L 0.31 deleterious(0) probably_damaging(0.992) TCGA-GM-A2DB-01 5 74646181 74646181 G C HMGCR Missense_Mutation p.Q254H 0.31 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DB-01 5 82834915 82834915 A T VCAN Missense_Mutation p.Q2031H 0.14 tolerated(0.06) benign(0.004) TCGA-GM-A2DB-01 6 114378489 114378489 G A HS3ST5 Missense_Mutation p.R325C 0.15 tolerated(0.15) benign(0.009) TCGA-GM-A2DB-01 6 134327960 134327960 C A SLC2A12 Missense_Mutation p.L519F 0.10 deleterious(0) probably_damaging(1) TCGA-GM-A2DB-01 6 138599709 138599709 C A KIAA1244 Missense_Mutation p.H750Q 0.12 tolerated(0.63) benign(0.051) TCGA-GM-A2DB-01 6 55739571 55739571 G T BMP5 Missense_Mutation p.D31E 0.28 tolerated(0.23) benign(0.007) TCGA-GM-A2DB-01 6 56504793 56504793 A T DST Missense_Mutation p.N314K 0.09 possibly_damaging(0.885) TCGA-GM-A2DB-01 7 100686030 100686030 C T MUC17 Missense_Mutation p.S3778F 0.11 possibly_damaging(0.485) TCGA-GM-A2DB-01 7 107763589 107763589 A T LAMB4 Silent p.L7L 0.15 TCGA-GM-A2DB-01 7 158555812 158555812 G T ESYT2 Silent p.L430L 0.14 TCGA-GM-A2DB-01 7 33407469 33407469 C A BBS9 Missense_Mutation p.T595N 0.12 tolerated(0.14) probably_damaging(0.979) TCGA-GM-A2DB-01 7 4308450 4308450 G A SDK1 3'UTR 0.15 TCGA-GM-A2DB-01 7 43508593 43508593 T A HECW1 Missense_Mutation p.N996K 0.09 tolerated(0.12) possibly_damaging(0.634) TCGA-GM-A2DB-01 7 75617649 75617649 C T POR 3'Flank 0.23 TCGA-GM-A2DB-01 7 88956723 88956724 - A ZNF804B Frame_Shift_Ins p.Q108Tfs*6 0.34 TCGA-GM-A2DB-01 7 94915611 94915611 C G PPP1R9A Missense_Mutation p.Q1235E 0.06 deleterious(0.04) benign(0.012) TCGA-GM-A2DB-01 8 101272137 101272137 C T RNF19A Missense_Mutation p.A591T 0.18 deleterious(0.04) possibly_damaging(0.493) TCGA-GM-A2DB-01 8 104438284 104438284 G C DCAF13 Missense_Mutation p.V279L 0.22 tolerated(0.05) benign(0.105) TCGA-GM-A2DB-01 8 110510689 110510690 AG - PKHD1L1 Splice_Site p.X3534_splice 0.11 TCGA-GM-A2DB-01 8 110527423 110527423 T C PKHD1L1 Missense_Mutation p.S3860P 0.21 tolerated(0.17) benign(0.002) TCGA-GM-A2DB-01 8 124361569 124361569 C T ATAD2 Missense_Mutation p.G588S 0.12 deleterious(0) probably_damaging(1) TCGA-GM-A2DB-01 8 139890331 139890331 C T COL22A1 Missense_Mutation p.R107H 0.33 unknown(0) TCGA-GM-A2DB-01 8 33369846 33369847 - G TTI2 Frame_Shift_Ins p.S96Lfs*9 0.22 TCGA-GM-A2DB-01 8 38003828 38003828 G A STAR Silent p.N148N 0.06 TCGA-GM-A2DB-01 8 63659492 63659492 A T NKAIN3 Missense_Mutation p.D92V 0.14 deleterious(0.01) benign(0.144) TCGA-GM-A2DB-01 8 99718803 99718803 C T STK3 Silent p.V220V 0.09 TCGA-GM-A2DB-01 9 123922561 123922561 G T CNTRL Missense_Mutation p.Q1690H 0.32 probably_damaging(0.982) TCGA-GM-A2DB-01 9 130250014 130250014 A T LRSAM1 Missense_Mutation p.N440I 0.13 deleterious(0) possibly_damaging(0.628) TCGA-GM-A2DB-01 9 131774546 131774546 C A SH3GLB2 Missense_Mutation p.R198L 0.25 tolerated(0.13) probably_damaging(1) TCGA-GM-A2DB-01 9 140002075 140002075 G T MAN1B1 Missense_Mutation p.W619C 0.37 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DB-01 9 33989058 33989059 TC - UBAP2 Frame_Shift_Del p.N119* 0.17 TCGA-GM-A2DB-01 9 34506808 34506808 C T DNAI1 Missense_Mutation p.P416L 0.16 tolerated(0.25) benign(0.002) TCGA-GM-A2DB-01 9 35674262 35674264 AGA - CA9 In_Frame_Del p.E105del 0.21 TCGA-GM-A2DB-01 9 37126728 37126728 C A ZCCHC7 Nonsense_Mutation p.C133* 0.07 TCGA-GM-A2DB-01 9 37888181 37888181 C T SLC25A51 Missense_Mutation p.V123M 0.24 tolerated(0.34) benign(0.009) TCGA-GM-A2DB-01 9 84532403 84532403 C T SPATA31D5P RNA 0.08 TCGA-GM-A2DB-01 X 100603573 100603573 G T TIMM8A Missense_Mutation p.T27N 0.21 tolerated(0.16) benign(0.171) TCGA-GM-A2DB-01 X 152612290 152612290 G A ZNF275 Silent p.A49A 0.10 TCGA-GM-A2DB-01 X 15343249 15343249 G A PIGA Missense_Mutation p.H292Y 0.16 deleterious(0) possibly_damaging(0.893) TCGA-GM-A2DB-01 X 32364150 32364150 G T DMD Missense_Mutation p.D1832E 0.22 possibly_damaging(0.621) TCGA-GM-A2DB-01 X 32429902 32429902 C G DMD Missense_Mutation p.K1400N 0.12 possibly_damaging(0.838) TCGA-GM-A2DB-01 X 34150113 34150113 T C FAM47A Missense_Mutation p.K95E 0.10 deleterious(0.01) possibly_damaging(0.833) TCGA-GM-A2DB-01 X 38146288 38146288 C T RPGR Missense_Mutation p.G655E 0.12 benign(0.012) TCGA-GM-A2DB-01 X 38160519 38160519 A - RPGR Frame_Shift_Del p.L347* 0.13 TCGA-GM-A2DB-01 X 41075620 41075620 A C USP9X Missense_Mutation p.M1934L 0.14 tolerated(1) possibly_damaging(0.83) TCGA-GM-A2DB-01 X 47485728 47485728 G - CFP Frame_Shift_Del p.L378* 0.11 TCGA-GM-A2DC-01 12 48387250 48387250 C T COL2A1 Silent p.P320P 0.38 TCGA-GM-A2DC-01 14 69257168 69257169 - C ZFP36L1 Frame_Shift_Ins p.C34Lfs*41 0.38 TCGA-GM-A2DC-01 17 35981486 35981486 C A DDX52 Missense_Mutation p.G436V 0.21 deleterious(0) probably_damaging(1) TCGA-GM-A2DC-01 17 39274455 39274455 G T KRTAP4-11 Missense_Mutation p.T38N 0.20 deleterious(0.02) unknown(0) TCGA-GM-A2DC-01 19 10444840 10444840 A - ICAM3 Frame_Shift_Del p.I479Mfs*17 0.41 TCGA-GM-A2DC-01 19 12251081 12251081 A C ZNF20 5'UTR 0.64 TCGA-GM-A2DC-01 19 38956758 38956758 G A RYR1 Silent p.P966P 0.11 TCGA-GM-A2DC-01 19 46891947 46891947 C T PPP5C Silent p.H438H 0.26 TCGA-GM-A2DC-01 1 154897637 154897637 T A PMVK Missense_Mutation p.N183Y 0.29 deleterious(0.03) benign(0.023) TCGA-GM-A2DC-01 1 169446894 169446894 T G SLC19A2 Silent p.L102L 0.18 TCGA-GM-A2DC-01 1 20020987 20020987 G A TMCO4 Silent p.A480A 0.64 TCGA-GM-A2DC-01 20 52198994 52198994 C T ZNF217 Silent p.K124K 0.17 TCGA-GM-A2DC-01 21 45157217 45157217 C - PDXK Intron 0.16 TCGA-GM-A2DC-01 22 20114621 20114621 T A RANBP1 3'UTR 0.21 TCGA-GM-A2DC-01 2 1687851 1687851 C A PXDN Splice_Site p.X163_splice 0.33 TCGA-GM-A2DC-01 2 170366849 170366849 C T KLHL41 Silent p.S187S 0.32 TCGA-GM-A2DC-01 2 31751146 31751146 C T AL133247.2 5'Flank 0.32 TCGA-GM-A2DC-01 3 155198945 155198945 C T PLCH1 Missense_Mutation p.G1632S 0.35 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-GM-A2DC-01 3 15643006 15643006 G C HACL1 5'UTR 0.29 TCGA-GM-A2DC-01 5 140590325 140590325 G A PCDHB12 Missense_Mutation p.G616S 0.31 tolerated_low_confidence(1) benign(0.01) TCGA-GM-A2DC-01 7 142481319 142481319 C T PRSS3P2 RNA 0.66 TCGA-GM-A2DC-01 7 36934508 36934508 G A ELMO1 Missense_Mutation p.R518C 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-GM-A2DC-01 7 50198847 50198847 G A C7orf72 3'UTR 0.29 TCGA-GM-A2DC-01 7 6084237 6084237 T A EIF2AK1 Missense_Mutation p.Y229F 0.64 deleterious(0.03) possibly_damaging(0.558) TCGA-GM-A2DC-01 8 145542158 145542158 C T DGAT1 Silent p.A180A 0.40 TCGA-GM-A2DC-01 8 67988761 67988761 C T CSPP1 Silent p.I84I 0.18 TCGA-GM-A2DC-01 9 117808755 117808755 C T TNC Missense_Mutation p.E1687K 0.30 tolerated(0.1) benign(0.013) TCGA-GM-A2DC-01 X 135772805 135772805 A G ARHGEF6 Silent p.Y383Y 0.43 TCGA-GM-A2DC-01 X 54585017 54585017 C T GNL3L Missense_Mutation p.T532M 0.35 tolerated(0.12) benign(0.068) TCGA-GM-A2DC-01 X 99920275 99920275 C T SRPX2 Missense_Mutation p.R190C 0.37 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DD-01 10 124914602 124914602 G C BUB3 Missense_Mutation p.G57R 0.18 tolerated(0.13) benign(0.004) TCGA-GM-A2DD-01 10 22016857 22016857 G C MLLT10 Missense_Mutation p.R688P 0.22 deleterious(0.04) probably_damaging(0.972) TCGA-GM-A2DD-01 10 24873761 24873761 C G ARHGAP21 Missense_Mutation p.W1819C 0.05 deleterious(0) probably_damaging(1) TCGA-GM-A2DD-01 10 27964235 27964235 T C MKX Missense_Mutation p.T328A 0.12 tolerated_low_confidence(0.05) benign(0.001) TCGA-GM-A2DD-01 11 33120663 33120663 C T CSTF3 Missense_Mutation p.A324T 0.27 tolerated(0.31) benign(0.212) TCGA-GM-A2DD-01 11 51515936 51515936 A T OR4C46 Missense_Mutation p.I219F 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-GM-A2DD-01 12 108685826 108685826 G A CMKLR1 Missense_Mutation p.A305V 0.23 deleterious(0) probably_damaging(0.971) TCGA-GM-A2DD-01 12 49663426 49663426 A G TUBA1C Missense_Mutation p.H61R 0.09 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-GM-A2DD-01 12 52467488 52467488 G A C12orf44 Silent p.E18E 0.15 TCGA-GM-A2DD-01 13 24242897 24242897 C T TNFRSF19 Silent p.G302G 0.26 TCGA-GM-A2DD-01 14 106091086 106091086 C G IGHG4 Missense_Mutation p.E237D 0.06 deleterious(0.01) possibly_damaging(0.663) TCGA-GM-A2DD-01 14 24470289 24470289 C G DHRS4L2 Missense_Mutation p.S176C 0.17 tolerated(0.14) benign(0.085) TCGA-GM-A2DD-01 14 24617078 24617078 C T RNF31 Silent p.V57V 0.19 TCGA-GM-A2DD-01 15 24924089 24924089 T A NPAP1 Silent p.S1025S 0.10 TCGA-GM-A2DD-01 15 37110091 37110091 T A CSNK1A1P1 RNA 0.12 TCGA-GM-A2DD-01 15 78580711 78580711 G - WDR61 Frame_Shift_Del p.I193Ffs*4 0.24 TCGA-GM-A2DD-01 16 15130160 15130160 T A PDXDC1 3'UTR 0.39 TCGA-GM-A2DD-01 16 57063982 57063982 G C NLRC5 Missense_Mutation p.R801S 0.11 tolerated(0.07) benign(0.014) TCGA-GM-A2DD-01 16 68844164 68844164 C A CDH1 Missense_Mutation p.T251K 0.13 tolerated(0.32) benign(0.123) TCGA-GM-A2DD-01 16 69965459 69965459 G T WWP2 Silent p.T523T 0.15 TCGA-GM-A2DD-01 16 90161797 90161797 C T TUBB8P7 RNA 0.19 TCGA-GM-A2DD-01 17 26729308 26729308 G A SLC46A1 Silent p.I371I 0.38 TCGA-GM-A2DD-01 17 3417161 3417161 C T TRPV3 3'UTR 0.44 TCGA-GM-A2DD-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.40 tolerated(0.11) benign(0.308) TCGA-GM-A2DD-01 18 72913658 72913658 G A ZADH2 Missense_Mutation p.P283S 0.16 tolerated(0.09) benign(0.007) TCGA-GM-A2DD-01 19 38795109 38795109 A T C19orf33 Silent p.A39A 0.20 TCGA-GM-A2DD-01 19 4054106 4054106 C A ZBTB7A Missense_Mutation p.K375N 0.11 deleterious(0) probably_damaging(0.994) TCGA-GM-A2DD-01 19 50321694 50321694 C T MED25 Silent p.F32F 0.08 TCGA-GM-A2DD-01 1 107867331 107867331 T A NTNG1 Missense_Mutation p.I225N 0.16 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DD-01 1 151509325 151509325 T A CGN Missense_Mutation p.N1142K 0.35 tolerated(0.18) benign(0.321) TCGA-GM-A2DD-01 1 154144514 154144514 A C TPM3 Intron 0.16 TCGA-GM-A2DD-01 1 154938844 154938844 C T SHC1 Missense_Mutation p.R378Q 0.10 tolerated(0.61) benign(0.09) TCGA-GM-A2DD-01 1 205687505 205687505 G A NUCKS1 Missense_Mutation p.P212L 0.11 tolerated(0.29) benign(0.008) TCGA-GM-A2DD-01 1 62455912 62455912 G A INADL Missense_Mutation p.G1248E 0.26 deleterious(0) probably_damaging(1) TCGA-GM-A2DD-01 1 7907739 7907739 C A UTS2 3'Flank 0.12 TCGA-GM-A2DD-01 1 970683 970683 G T AGRN Missense_Mutation p.V164L 0.44 tolerated(0.08) benign(0.097) TCGA-GM-A2DD-01 20 3007821 3007821 A T PTPRA Missense_Mutation p.Y588F 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-GM-A2DD-01 20 62173545 62173545 C A SRMS Missense_Mutation p.R306L 0.18 tolerated(0.09) possibly_damaging(0.495) TCGA-GM-A2DD-01 2 128896328 128896328 G A UGGT1 Missense_Mutation p.V541I 0.12 tolerated(0.42) benign(0.001) TCGA-GM-A2DD-01 2 37319151 37319151 G A GPATCH11 Missense_Mutation p.A137T 0.08 tolerated(0.41) benign(0.001) TCGA-GM-A2DD-01 2 86305061 86305061 C A POLR1A Missense_Mutation p.G434V 0.08 deleterious(0) probably_damaging(1) TCGA-GM-A2DD-01 3 115439850 115439850 C A GAP43 3'UTR 0.29 TCGA-GM-A2DD-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.22 tolerated(0.11) possibly_damaging(0.529) TCGA-GM-A2DD-01 3 49011143 49011143 G A ARIH2 Missense_Mutation p.R261H 0.12 tolerated(0.07) benign(0.005) TCGA-GM-A2DD-01 3 49169777 49169777 T C LAMB2 Missense_Mutation p.H104R 0.26 tolerated(0.37) benign(0.063) TCGA-GM-A2DD-01 3 52540798 52540798 C G STAB1 Missense_Mutation p.L641V 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-GM-A2DD-01 3 99567539 99567539 G A FILIP1L Missense_Mutation p.T994I 0.13 tolerated(0.1) probably_damaging(0.994) TCGA-GM-A2DD-01 4 114257088 114257088 C T ANK2 Missense_Mutation p.R1156C 0.36 probably_damaging(1) TCGA-GM-A2DD-01 4 17586655 17586655 C G LAP3 Silent p.R200R 0.17 TCGA-GM-A2DD-01 4 46930366 46930366 C T GABRA4 Missense_Mutation p.G514D 0.11 deleterious(0.01) probably_damaging(1) TCGA-GM-A2DD-01 6 117593627 117593627 T C VGLL2 Silent p.Y308Y 0.04 TCGA-GM-A2DD-01 6 26225797 26225797 G A HIST1H3E 3'UTR 0.10 TCGA-GM-A2DD-01 6 32094895 32094895 T C ATF6B Silent p.T109T 0.23 TCGA-GM-A2DD-01 6 41908180 41908180 G A CCND3 Silent p.R114R 0.11 TCGA-GM-A2DD-01 6 4935980 4935980 C T CDYL Missense_Mutation p.S308L 0.20 deleterious(0) possibly_damaging(0.885) TCGA-GM-A2DD-01 6 70048893 70048893 G A BAI3 Missense_Mutation p.A1092T 0.07 tolerated(0.25) probably_damaging(0.993) TCGA-GM-A2DD-01 6 99283172 99283173 - CAG POU3F2 In_Frame_Ins p.Q149dup 0.47 TCGA-GM-A2DD-01 7 12412764 12412764 A G VWDE Missense_Mutation p.S476P 0.16 deleterious(0) probably_damaging(0.993) TCGA-GM-A2DD-01 7 129349050 129349050 C A NRF1 Missense_Mutation p.R248S 0.11 deleterious(0) benign(0.403) TCGA-GM-A2DD-01 7 36194147 36194147 G A EEPD1 Missense_Mutation p.G72S 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-GM-A2DD-01 7 55249005 55249005 G T EGFR Missense_Mutation p.S768I 0.27 deleterious(0) probably_damaging(1) TCGA-GM-A2DD-01 7 8126171 8126171 A C GLCCI1 3'UTR 0.21 TCGA-GM-A2DD-01 7 99022771 99022771 C G ATP5J2-PTCD1 Missense_Mutation p.A511P 0.32 deleterious(0.02) possibly_damaging(0.894) TCGA-GM-A2DD-01 9 101611262 101611262 A C GALNT12 Missense_Mutation p.K545T 0.13 tolerated(0.17) benign(0.011) TCGA-GM-A2DD-01 X 103219127 103219127 A C TMSB15B Missense_Mutation p.E11A 0.06 tolerated(0.17) possibly_damaging(0.874) TCGA-GM-A2DD-01 X 148584821 148584821 A G IDS Intron 0.33 TCGA-GM-A2DD-01 X 47061598 47061598 C T UBA1 Silent p.D285D 0.12 TCGA-GM-A2DD-01 X 47436041 47436041 T A SYN1 Splice_Site p.X280_splice 0.33 TCGA-GM-A2DD-01 X 51151186 51151186 C T CXorf67 Missense_Mutation p.P440S 0.29 tolerated(1) possibly_damaging(0.882) TCGA-GM-A2DD-01 X 54142996 54142996 A G FAM120C Missense_Mutation p.L765P 0.21 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DF-01 10 70723131 70723131 G A DDX21 Missense_Mutation p.R231Q 0.11 deleterious(0.01) possibly_damaging(0.746) TCGA-GM-A2DF-01 11 123886964 123886964 G A OR10G4 Missense_Mutation p.R228H 0.20 tolerated(0.21) benign(0.014) TCGA-GM-A2DF-01 11 59225149 59225149 C A OR4D6 Missense_Mutation p.T239K 0.13 deleterious(0) probably_damaging(1) TCGA-GM-A2DF-01 11 65479573 65479573 G T KAT5 5'UTR 0.25 TCGA-GM-A2DF-01 11 67764227 67764227 C G UNC93B1 Missense_Mutation p.R311P 0.12 deleterious(0.02) probably_damaging(0.944) TCGA-GM-A2DF-01 11 88330461 88330461 C G GRM5 Missense_Mutation p.G485A 0.08 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DF-01 12 12397448 12397448 T C LRP6 Missense_Mutation p.Y66C 0.19 tolerated(0.1) benign(0.136) TCGA-GM-A2DF-01 12 124835202 124835202 G A NCOR2 Missense_Mutation p.R1259W 0.15 probably_damaging(1) TCGA-GM-A2DF-01 12 3149677 3149677 G A TEAD4 3'UTR 0.31 TCGA-GM-A2DF-01 13 103385602 103385602 G A CCDC168 Silent p.I1186I 0.12 TCGA-GM-A2DF-01 13 111366554 111366554 C G ING1 5'Flank 0.72 TCGA-GM-A2DF-01 13 111368180 111368180 C G ING1 Silent p.L130L 0.74 TCGA-GM-A2DF-01 13 111927099 111927099 G A ARHGEF7 Missense_Mutation p.D433N 0.35 deleterious(0.01) benign(0.282) TCGA-GM-A2DF-01 13 77738619 77738619 G C MYCBP2 Missense_Mutation p.L2135V 0.10 probably_damaging(0.968) TCGA-GM-A2DF-01 14 92922791 92922791 C T SLC24A4 Missense_Mutation p.P365L 0.13 tolerated(0.09) benign(0.005) TCGA-GM-A2DF-01 15 35530020 35530020 A T ANP32AP1 RNA 0.11 TCGA-GM-A2DF-01 15 40661552 40661552 C T DISP2 Missense_Mutation p.A1080V 0.24 deleterious(0) possibly_damaging(0.856) TCGA-GM-A2DF-01 15 89021200 89021200 G A MRPS11 Missense_Mutation p.R192Q 0.09 deleterious(0.01) probably_damaging(1) TCGA-GM-A2DF-01 16 30780649 30780649 A G RNF40 Missense_Mutation p.N797S 0.09 deleterious(0) possibly_damaging(0.808) TCGA-GM-A2DF-01 17 15207180 15207180 C T TEKT3 3'UTR 0.27 TCGA-GM-A2DF-01 17 67083615 67083615 C T ABCA6 Splice_Site p.X1233_splice 0.03 TCGA-GM-A2DF-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.24 TCGA-GM-A2DF-01 19 14865766 14865766 C A EMR2 Missense_Mutation p.Q530H 0.26 deleterious(0) probably_damaging(0.982) TCGA-GM-A2DF-01 19 18779780 18779780 G A KLHL26 Missense_Mutation p.D525N 0.31 deleterious(0.05) benign(0.039) TCGA-GM-A2DF-01 19 49230688 49230688 C T RASIP1 Splice_Site p.X612_splice 0.24 TCGA-GM-A2DF-01 19 49377266 49377266 C T PPP1R15A Missense_Mutation p.S259F 0.07 deleterious(0) benign(0.146) TCGA-GM-A2DF-01 1 153912704 153912704 G C DENND4B Missense_Mutation p.R511G 0.12 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DF-01 1 165380213 165380213 G A RXRG Silent p.S252S 0.10 TCGA-GM-A2DF-01 1 169391472 169391472 G C CCDC181 Missense_Mutation p.S66C 0.13 deleterious(0.01) possibly_damaging(0.58) TCGA-GM-A2DF-01 1 170511653 170511653 A G GORAB Silent p.E172E 0.09 TCGA-GM-A2DF-01 1 247464502 247464502 C A ZNF496 Silent p.G361G 0.17 TCGA-GM-A2DF-01 1 44086512 44086512 G C PTPRF Missense_Mutation p.G1790R 0.16 deleterious(0) probably_damaging(1) TCGA-GM-A2DF-01 20 10279990 10279990 G A SNAP25 Missense_Mutation p.R161H 0.12 deleterious(0) probably_damaging(0.984) TCGA-GM-A2DF-01 21 39795340 39795340 A T ERG Missense_Mutation p.V134E 0.09 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DF-01 2 11798721 11798721 C T NTSR2 Missense_Mutation p.V373I 0.11 deleterious(0.03) benign(0.008) TCGA-GM-A2DF-01 2 119750776 119750776 G A MARCO Nonsense_Mutation p.W443* 0.11 TCGA-GM-A2DF-01 2 138000041 138000041 C G THSD7B Missense_Mutation p.T722S 0.18 tolerated(0.6) benign(0.22) TCGA-GM-A2DF-01 3 118865255 118865255 C T C3orf30 Silent p.N73N 0.19 TCGA-GM-A2DF-01 3 28381938 28381938 T - AZI2 Frame_Shift_Del p.E58Rfs*5 0.10 TCGA-GM-A2DF-01 3 33055654 33055654 G A GLB1 Missense_Mutation p.S543L 0.39 tolerated(0.14) benign(0.373) TCGA-GM-A2DF-01 3 47163294 47163294 A C SETD2 Silent p.A944A 0.16 TCGA-GM-A2DF-01 3 9798276 9798276 G A OGG1 Missense_Mutation p.G290E 0.31 tolerated(0.14) benign(0.306) TCGA-GM-A2DF-01 4 76532544 76532544 A T CDKL2 Missense_Mutation p.I122N 0.05 deleterious(0) probably_damaging(0.99) TCGA-GM-A2DF-01 5 140209360 140209360 G A PCDHA6 Missense_Mutation p.A562T 0.08 deleterious_low_confidence(0.01) benign(0.152) TCGA-GM-A2DF-01 5 147477448 147477448 C G SPINK5 Missense_Mutation p.Q301E 0.22 tolerated(0.56) benign(0.005) TCGA-GM-A2DF-01 6 136599508 136599508 C T BCLAF1 Missense_Mutation p.G171R 0.05 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-GM-A2DF-01 6 35277530 35277530 C T DEF6 Silent p.D60D 0.27 TCGA-GM-A2DF-01 6 7393371 7393371 C T RIOK1 Silent p.D37D 0.11 TCGA-GM-A2DF-01 7 55238332 55238332 C T EGFR Intron 0.12 TCGA-GM-A2DF-01 7 589987 589987 C T PRKAR1B 3'UTR 0.36 TCGA-GM-A2DF-01 7 89982189 89982189 T G GTPBP10 Silent p.G31G 0.08 TCGA-GM-A2DF-01 8 95888691 95888691 G A INTS8 Missense_Mutation p.G949R 0.05 deleterious(0) probably_damaging(1) TCGA-GM-A2DF-01 9 95481556 95481556 G A BICD2 Silent p.R457R 0.08 TCGA-GM-A2DF-01 X 152825329 152825329 G A ATP2B3 Missense_Mutation p.R923H 0.19 deleterious(0.01) possibly_damaging(0.833) TCGA-GM-A2DH-01 10 116606315 116606315 C T FAM160B1 Intron 0.18 TCGA-GM-A2DH-01 10 129902264 129902264 C G MKI67 Missense_Mutation p.E2614Q 0.10 tolerated(0.06) probably_damaging(0.989) TCGA-GM-A2DH-01 10 32097582 32097582 G C ARHGAP12 Silent p.L787L 0.04 TCGA-GM-A2DH-01 10 64967194 64967194 C A JMJD1C Missense_Mutation p.G1412V 0.33 tolerated_low_confidence(0.16) benign(0.01) TCGA-GM-A2DH-01 10 76735226 76735226 G C KAT6B Missense_Mutation p.K377N 0.14 possibly_damaging(0.837) TCGA-GM-A2DH-01 11 103907615 103907615 G T DDI1 Missense_Mutation p.S22I 0.09 deleterious(0.05) possibly_damaging(0.707) TCGA-GM-A2DH-01 11 10626073 10626073 G C MRVI1 Missense_Mutation p.S541C 0.18 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DH-01 11 108181011 108181011 G T ATM Missense_Mutation p.D1963Y 0.09 deleterious(0) probably_damaging(0.984) TCGA-GM-A2DH-01 11 110494947 110494947 T A ARHGAP20 Missense_Mutation p.T148S 0.07 deleterious(0.01) possibly_damaging(0.697) TCGA-GM-A2DH-01 11 123886695 123886695 C A OR10G4 Missense_Mutation p.S138R 0.22 tolerated(1) benign(0.001) TCGA-GM-A2DH-01 11 124637779 124637779 T G MSANTD2 Missense_Mutation p.K273Q 0.17 deleterious_low_confidence(0.05) benign(0.415) TCGA-GM-A2DH-01 11 130064091 130064091 C G ST14 Missense_Mutation p.S308C 0.06 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DH-01 11 134237222 134237222 C G GLB1L2 Missense_Mutation p.I292M 0.05 deleterious(0.02) possibly_damaging(0.832) TCGA-GM-A2DH-01 11 18042690 18042690 G A TPH1 Missense_Mutation p.R395C 0.16 deleterious(0) probably_damaging(0.986) TCGA-GM-A2DH-01 11 26743079 26743079 G A SLC5A12 Silent p.F61F 0.07 TCGA-GM-A2DH-01 11 47688419 47688419 C T AGBL2 Intron 0.08 TCGA-GM-A2DH-01 11 59271565 59271565 G T OR4D11 Missense_Mutation p.V173F 0.15 tolerated(0.05) probably_damaging(0.928) TCGA-GM-A2DH-01 11 61630536 61630536 C A FADS2 Missense_Mutation p.F325L 0.10 tolerated(0.83) benign(0.002) TCGA-GM-A2DH-01 11 62433975 62433975 G T METTL12 Nonsense_Mutation p.E59* 0.11 TCGA-GM-A2DH-01 11 89017998 89017998 C A TYR Silent p.A414A 0.08 TCGA-GM-A2DH-01 11 95546149 95546149 G C CEP57 Missense_Mutation p.E86Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DH-01 12 106890632 106890632 G T POLR3B Nonsense_Mutation p.E974* 0.07 TCGA-GM-A2DH-01 12 106890633 106890633 A T POLR3B Missense_Mutation p.E974V 0.07 deleterious(0.02) possibly_damaging(0.487) TCGA-GM-A2DH-01 12 117486929 117486929 C G TESC Missense_Mutation p.E82Q 0.17 tolerated(0.06) possibly_damaging(0.788) TCGA-GM-A2DH-01 12 124069325 124069325 G C TMED2 Missense_Mutation p.E48Q 0.17 tolerated(0.2) benign(0.029) TCGA-GM-A2DH-01 12 41967342 41967342 G C PDZRN4 Missense_Mutation p.E921Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-GM-A2DH-01 12 50044490 50044490 A C FMNL3 Missense_Mutation p.S657A 0.17 tolerated(0.52) benign(0.05) TCGA-GM-A2DH-01 12 51208091 51208091 G C ATF1 Missense_Mutation p.Q180H 0.11 deleterious(0) probably_damaging(0.982) TCGA-GM-A2DH-01 12 54448714 54448714 G C HOXC4 Missense_Mutation p.E174Q 0.16 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 12 58157933 58157933 G A CYP27B1 Missense_Mutation p.S388F 0.15 deleterious(0) possibly_damaging(0.548) TCGA-GM-A2DH-01 12 70049244 70049244 G A BEST3 Silent p.L484L 0.09 TCGA-GM-A2DH-01 12 70149279 70149279 C G RAB3IP Missense_Mutation p.Q47E 0.05 tolerated_low_confidence(0.24) benign(0.027) TCGA-GM-A2DH-01 12 70938401 70938401 C G PTPRB Silent p.L1810L 0.14 TCGA-GM-A2DH-01 12 80762042 80762042 G C OTOGL Missense_Mutation p.V2181L 0.16 tolerated(0.19) benign(0.049) TCGA-GM-A2DH-01 12 80865973 80865973 G C PTPRQ Missense_Mutation p.E373Q 0.06 deleterious(0.03) probably_damaging(0.972) TCGA-GM-A2DH-01 12 85264335 85264335 C T SLC6A15 Missense_Mutation p.G473S 0.07 tolerated(0.47) possibly_damaging(0.504) TCGA-GM-A2DH-01 13 21549116 21549116 G A LATS2 Nonsense_Mutation p.R1054* 0.06 TCGA-GM-A2DH-01 13 23909580 23909580 T G SACS Missense_Mutation p.E2812A 0.14 probably_damaging(0.993) TCGA-GM-A2DH-01 13 30782679 30782679 A C KATNAL1 Nonstop_Mutation p.*491Gext*23 0.17 TCGA-GM-A2DH-01 13 46066350 46066350 C T COG3 Silent p.Y384Y 0.07 TCGA-GM-A2DH-01 13 96086130 96086130 G A CLDN10 Missense_Mutation p.G15R 0.26 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 14 105359435 105359435 C T CEP170B Missense_Mutation p.P1334L 0.27 deleterious(0) benign(0.343) TCGA-GM-A2DH-01 14 20389515 20389515 C A OR4K5 Missense_Mutation p.F250L 0.09 deleterious(0) possibly_damaging(0.868) TCGA-GM-A2DH-01 14 36003645 36003645 G C INSM2 Missense_Mutation p.G63R 0.19 deleterious(0.03) benign(0.128) TCGA-GM-A2DH-01 14 39649910 39649910 G T PNN Nonsense_Mutation p.E333* 0.05 TCGA-GM-A2DH-01 14 39649917 39649917 G A PNN Missense_Mutation p.G335E 0.04 tolerated_low_confidence(0.24) probably_damaging(1) TCGA-GM-A2DH-01 14 91671099 91671099 T C C14orf159 Silent p.A498A 0.11 TCGA-GM-A2DH-01 14 94929440 94929440 G T SERPINA9 Missense_Mutation p.T433N 0.06 tolerated(0.06) possibly_damaging(0.586) TCGA-GM-A2DH-01 14 96773098 96773098 C A ATG2B Nonsense_Mutation p.E1487* 0.07 TCGA-GM-A2DH-01 15 45392998 45392998 G T DUOX2 Missense_Mutation p.A987D 0.27 tolerated(0.67) benign(0.157) TCGA-GM-A2DH-01 15 71128660 71128660 C T LARP6 Missense_Mutation p.V129I 0.30 tolerated(0.63) benign(0.416) TCGA-GM-A2DH-01 15 77471191 77471191 C A PEAK1 Missense_Mutation p.Q1026H 0.19 tolerated(0.17) benign(0.235) TCGA-GM-A2DH-01 15 95022276 95022276 C A MCTP2 3'UTR 0.16 TCGA-GM-A2DH-01 16 1555502 1555502 T - TELO2 Frame_Shift_Del p.L645Rfs*68 0.30 TCGA-GM-A2DH-01 16 18887618 18887618 G C SMG1 Missense_Mutation p.T573S 0.22 tolerated(0.5) benign(0.024) TCGA-GM-A2DH-01 16 20370693 20370693 G A PDILT Missense_Mutation p.P568L 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-GM-A2DH-01 16 23634375 23634375 C G PALB2 Missense_Mutation p.G971R 0.12 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 16 24800957 24800957 G A TNRC6A Missense_Mutation p.E332K 0.31 tolerated(0.14) benign(0.039) TCGA-GM-A2DH-01 16 30750927 30750927 G A SRCAP Missense_Mutation p.R3189Q 0.20 unknown(0) TCGA-GM-A2DH-01 16 31235541 31235541 C A TRIM72 Missense_Mutation p.P300Q 0.17 deleterious(0.03) probably_damaging(0.963) TCGA-GM-A2DH-01 16 46960843 46960843 C G GPT2 Missense_Mutation p.Q459E 0.08 deleterious(0.02) benign(0.001) TCGA-GM-A2DH-01 16 55579724 55579724 G T LPCAT2 Missense_Mutation p.M310I 0.35 deleterious(0.01) benign(0.175) TCGA-GM-A2DH-01 16 66600053 66600053 C T CKLF 3'Flank 0.53 TCGA-GM-A2DH-01 16 71604626 71604626 C G TAT Missense_Mutation p.G290R 0.21 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 16 77398163 77398163 G A ADAMTS18 Silent p.L298L 0.11 TCGA-GM-A2DH-01 16 82182192 82182192 A - MPHOSPH6 3'UTR 0.28 TCGA-GM-A2DH-01 17 1400095 1400095 C T INPP5K Silent p.L322L 0.09 TCGA-GM-A2DH-01 17 27052568 27052568 G C TLCD1 Missense_Mutation p.P70A 0.11 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 17 27086539 27086539 G C FAM222B Missense_Mutation p.H146Q 0.28 tolerated(0.11) probably_damaging(0.944) TCGA-GM-A2DH-01 17 3593433 3593433 A T P2RX5 Missense_Mutation p.L182Q 0.13 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 17 42761272 42761284 GTTTCTGACCATC - CCDC43 Frame_Shift_Del p.R83Lfs*8 0.13 TCGA-GM-A2DH-01 17 49197816 49197816 C T SPAG9 Missense_Mutation p.D68N 0.09 tolerated(1) benign(0.001) TCGA-GM-A2DH-01 17 66987049 66987049 C T ABCA9 Missense_Mutation p.G1256R 0.27 tolerated(0.13) benign(0.031) TCGA-GM-A2DH-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.34 TCGA-GM-A2DH-01 17 76395512 76395512 C T PGS1 Missense_Mutation p.H199Y 0.17 deleterious(0.02) benign(0.106) TCGA-GM-A2DH-01 18 43523180 43523180 G C EPG5 Silent p.T630T 0.06 TCGA-GM-A2DH-01 18 60036346 60036346 C G TNFRSF11A Nonsense_Mutation p.S399* 0.14 TCGA-GM-A2DH-01 18 6890446 6890446 C T ARHGAP28 Silent p.I425I 0.05 TCGA-GM-A2DH-01 18 72775342 72775342 A T ZNF407 Missense_Mutation p.T1889S 0.24 deleterious(0.04) probably_damaging(0.991) TCGA-GM-A2DH-01 19 13080721 13080721 G A DAND5 Missense_Mutation p.E83K 0.05 tolerated(0.87) benign(0.001) TCGA-GM-A2DH-01 19 15052876 15052876 C T OR7C2 Silent p.T192T 0.18 TCGA-GM-A2DH-01 19 19010527 19010528 - T COPE Frame_Shift_Ins p.D296Efs*3 0.34 TCGA-GM-A2DH-01 19 38126353 38126353 G T ZFP30 Missense_Mutation p.F363L 0.10 deleterious(0) probably_damaging(0.989) TCGA-GM-A2DH-01 19 41245449 41245449 G C ITPKC Missense_Mutation p.G679A 0.29 tolerated(0.06) benign(0.434) TCGA-GM-A2DH-01 19 41388113 41388113 C A CYP2A7 Translation_Start_Site p.M1? 0.06 deleterious(0) unknown(0) TCGA-GM-A2DH-01 19 48537544 48537564 GCCGCTCCCCCAGGAGTCTCT - CABP5 In_Frame_Del p.Q135_R141del 0.31 TCGA-GM-A2DH-01 19 57328017 57328017 C T PEG3 Missense_Mutation p.R598H 0.15 tolerated(0.47) benign(0.011) TCGA-GM-A2DH-01 19 58101385 58101385 G A ZIK1 Missense_Mutation p.G69D 0.14 deleterious(0.02) probably_damaging(0.914) TCGA-GM-A2DH-01 19 9075811 9075811 C G MUC16 Missense_Mutation p.A3879P 0.18 unknown(0) TCGA-GM-A2DH-01 1 112999837 112999837 G C CTTNBP2NL Missense_Mutation p.E575Q 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-GM-A2DH-01 1 152325896 152325896 C G FLG2 Missense_Mutation p.E1456Q 0.06 probably_damaging(0.917) TCGA-GM-A2DH-01 1 154918839 154918839 G C PBXIP1 Silent p.A437A 0.11 TCGA-GM-A2DH-01 1 158325221 158325221 A T CD1E Missense_Mutation p.I163F 0.21 deleterious(0.01) benign(0.005) TCGA-GM-A2DH-01 1 158325222 158325222 T A CD1E Missense_Mutation p.I163N 0.22 tolerated(0.09) benign(0.018) TCGA-GM-A2DH-01 1 158637828 158637828 C G SPTA1 Missense_Mutation p.V620L 0.14 tolerated(0.31) possibly_damaging(0.777) TCGA-GM-A2DH-01 1 16935021 16935021 C G NBPF1 5'UTR 0.04 TCGA-GM-A2DH-01 1 176525735 176525735 G A PAPPA2 Missense_Mutation p.G93R 0.12 tolerated_low_confidence(0.38) benign(0.009) TCGA-GM-A2DH-01 1 185902681 185902681 A T HMCN1 Missense_Mutation p.E518V 0.13 probably_damaging(0.977) TCGA-GM-A2DH-01 1 201868756 201868756 G C LMOD1 Missense_Mutation p.T462S 0.07 possibly_damaging(0.844) TCGA-GM-A2DH-01 1 213405469 213405469 C G RPS6KC1 Missense_Mutation p.L366V 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-GM-A2DH-01 1 222826418 222826418 G C MIA3 Missense_Mutation p.E1385D 0.08 deleterious(0.01) possibly_damaging(0.64) TCGA-GM-A2DH-01 1 231155585 231155585 C A FAM89A 3'UTR 0.15 TCGA-GM-A2DH-01 1 231509794 231509794 C T EGLN1 Missense_Mutation p.D315N 0.04 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DH-01 1 234510115 234510115 T A COA6 Missense_Mutation p.S88T 0.10 tolerated(0.08) benign(0.212) TCGA-GM-A2DH-01 1 23763508 23763508 C A ASAP3 Missense_Mutation p.V458L 0.35 deleterious(0) benign(0.413) TCGA-GM-A2DH-01 1 40348988 40348988 A T TRIT1 Splice_Site p.X58_splice 0.16 TCGA-GM-A2DH-01 1 53736931 53736931 C G LRP8 Missense_Mutation p.G365A 0.14 deleterious(0.01) probably_damaging(1) TCGA-GM-A2DH-01 1 6228320 6228320 G C CHD5 Missense_Mutation p.L33V 0.10 deleterious_low_confidence(0.01) benign(0.364) TCGA-GM-A2DH-01 1 79403528 79403528 T A ELTD1 Nonsense_Mutation p.K242* 0.32 TCGA-GM-A2DH-01 1 94955532 94955532 G C ABCD3 Splice_Site p.X441_splice 0.15 TCGA-GM-A2DH-01 20 11899957 11899957 C T BTBD3 Intron 0.15 TCGA-GM-A2DH-01 20 30536617 30536617 C G PDRG1 Missense_Mutation p.E78Q 0.04 tolerated(1) benign(0.004) TCGA-GM-A2DH-01 20 3888841 3888855 CAGAGATAAAAACTT - PANK2 In_Frame_Del p.R300_F304del 0.11 TCGA-GM-A2DH-01 21 15753523 15753549 CCTTAAATGGGTATCTGCCAATTTCAG - HSPA13 Splice_Site p.X114_splice 0.12 TCGA-GM-A2DH-01 21 40969578 40969578 A G C21orf88 3'UTR 0.08 TCGA-GM-A2DH-01 21 43714747 43714747 G C ABCG1 Missense_Mutation p.W595C 0.13 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 22 19452726 19452726 T - UFD1L Frame_Shift_Del p.K165Rfs*7 0.12 TCGA-GM-A2DH-01 22 25023842 25023842 C T GGT1 Missense_Mutation p.P411L 0.28 tolerated(0.34) benign(0.015) TCGA-GM-A2DH-01 22 30184886 30184886 G T ASCC2 3'UTR 0.14 TCGA-GM-A2DH-01 22 40719254 40719254 C T TNRC6B 3'UTR 0.26 TCGA-GM-A2DH-01 22 42899254 42899254 C T SERHL RNA 0.21 TCGA-GM-A2DH-01 2 106694341 106694341 G T C2orf40 Missense_Mutation p.G136C 0.41 deleterious(0) possibly_damaging(0.57) TCGA-GM-A2DH-01 2 131520463 131520463 C T AMER3 Missense_Mutation p.T273I 0.29 tolerated(0.07) benign(0.253) TCGA-GM-A2DH-01 2 141283818 141283818 C T LRP1B Missense_Mutation p.E2622K 0.07 possibly_damaging(0.621) TCGA-GM-A2DH-01 2 158178120 158178120 G C ERMN Missense_Mutation p.S186C 0.04 deleterious(0.01) probably_damaging(1) TCGA-GM-A2DH-01 2 172945134 172945134 A T METAP1D Nonstop_Mutation p.*336Cext*8 0.26 TCGA-GM-A2DH-01 2 179435073 179435073 G C TTN Silent p.L25262L 0.14 TCGA-GM-A2DH-01 2 179616222 179616222 C T TTN Intron 0.04 TCGA-GM-A2DH-01 2 179616522 179616522 C T TTN Intron 0.32 TCGA-GM-A2DH-01 2 190559825 190559825 G A ANKAR Missense_Mutation p.D476N 0.16 deleterious(0) possibly_damaging(0.628) TCGA-GM-A2DH-01 2 191940991 191940991 C A STAT4 Nonsense_Mutation p.E112* 0.07 TCGA-GM-A2DH-01 2 202571627 202571627 C T ALS2 Missense_Mutation p.V1508I 0.14 tolerated(0.37) benign(0.012) TCGA-GM-A2DH-01 2 220088405 220088405 T G ATG9A Missense_Mutation p.I501L 0.25 tolerated(0.15) possibly_damaging(0.869) TCGA-GM-A2DH-01 2 238419384 238419384 G A MLPH Missense_Mutation p.G93D 0.09 deleterious(0.02) possibly_damaging(0.641) TCGA-GM-A2DH-01 2 29092829 29092829 C G TRMT61B Silent p.S105S 0.19 TCGA-GM-A2DH-01 2 29240092 29240092 C T FAM179A Missense_Mutation p.R373W 0.16 tolerated(0.16) benign(0.006) TCGA-GM-A2DH-01 2 40392055 40392055 C A SLC8A1 Missense_Mutation p.R703L 0.28 tolerated(0.07) benign(0.406) TCGA-GM-A2DH-01 2 55562132 55562132 C G CCDC88A Missense_Mutation p.E609Q 0.17 tolerated(0.15) probably_damaging(0.999) TCGA-GM-A2DH-01 2 63380681 63380681 C G WDPCP Missense_Mutation p.E703Q 0.21 tolerated(0.47) benign(0.188) TCGA-GM-A2DH-01 2 97019132 97019152 TGAGGTGTGGTCAAGTTTTAG - NCAPH Splice_Site p.X334_splice 0.09 TCGA-GM-A2DH-01 3 100962731 100962731 G C IMPG2 Missense_Mutation p.S815C 0.12 deleterious(0) possibly_damaging(0.885) TCGA-GM-A2DH-01 3 107492012 107492012 G T BBX Missense_Mutation p.D482Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DH-01 3 108129497 108129497 G C MYH15 Silent p.L1496L 0.08 TCGA-GM-A2DH-01 3 118621739 118621739 G T IGSF11 Missense_Mutation p.N308K 0.16 deleterious(0) benign(0.424) TCGA-GM-A2DH-01 3 121613302 121613302 G C SLC15A2 5'UTR 0.15 TCGA-GM-A2DH-01 3 122433111 122433111 C G PARP14 Missense_Mutation p.Q1279E 0.10 tolerated(1) benign(0.049) TCGA-GM-A2DH-01 3 128968548 128968548 C G COPG1 5'UTR 0.22 TCGA-GM-A2DH-01 3 134911476 134911476 C T EPHB1 Silent p.Y647Y 0.24 TCGA-GM-A2DH-01 3 135720977 135720977 C T PPP2R3A Nonsense_Mutation p.Q213* 0.11 TCGA-GM-A2DH-01 3 142775289 142775289 C A U2SURP Missense_Mutation p.H1029Q 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-GM-A2DH-01 3 151176404 151176404 G A IGSF10 Missense_Mutation p.R32C 0.04 deleterious(0.01) probably_damaging(1) TCGA-GM-A2DH-01 3 173998377 173998377 C A NLGN1 Missense_Mutation p.L586I 0.10 tolerated(0.06) probably_damaging(0.98) TCGA-GM-A2DH-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.45 deleterious(0.02) probably_damaging(0.984) TCGA-GM-A2DH-01 3 178951964 178951964 G C PIK3CA Missense_Mutation p.G1007R 0.22 tolerated(0.1) possibly_damaging(0.817) TCGA-GM-A2DH-01 3 179592153 179592153 C T PEX5L Missense_Mutation p.E230K 0.21 tolerated_low_confidence(0.23) benign(0.001) TCGA-GM-A2DH-01 3 187447477 187447477 G A BCL6 Missense_Mutation p.P239L 0.11 tolerated(0.29) benign(0.002) TCGA-GM-A2DH-01 3 193036869 193036869 C G ATP13A5 Missense_Mutation p.R648S 0.06 deleterious(0.04) benign(0.155) TCGA-GM-A2DH-01 3 195505713 195505713 A G MUC4 Silent p.A4246A 0.30 TCGA-GM-A2DH-01 3 38348837 38348837 C G SLC22A14 Silent p.L203L 0.13 TCGA-GM-A2DH-01 3 38889049 38889049 G C SCN11A Silent p.L1504L 0.13 TCGA-GM-A2DH-01 3 42739047 42739047 A T HHATL Missense_Mutation p.I273N 0.15 deleterious(0) possibly_damaging(0.739) TCGA-GM-A2DH-01 3 42906469 42906469 G C ACKR2 Missense_Mutation p.A159P 0.23 tolerated(0.3) possibly_damaging(0.765) TCGA-GM-A2DH-01 3 51664762 51664762 A C RAD54L2 Missense_Mutation p.I214L 0.16 tolerated(0.11) benign(0.093) TCGA-GM-A2DH-01 3 9754242 9754242 A C CPNE9 Missense_Mutation p.K132T 0.10 tolerated(0.1) possibly_damaging(0.587) TCGA-GM-A2DH-01 4 104066766 104066766 A G CENPE Silent p.L1496L 0.38 TCGA-GM-A2DH-01 4 147830218 147830218 C T TTC29 Silent p.L120L 0.36 TCGA-GM-A2DH-01 4 183710312 183710312 G A TENM3 Missense_Mutation p.D1791N 0.10 deleterious(0) possibly_damaging(0.821) TCGA-GM-A2DH-01 4 3225816 3225816 C G HTT Missense_Mutation p.Q2575E 0.06 benign(0.194) TCGA-GM-A2DH-01 4 39436168 39436168 G T KLB Missense_Mutation p.M388I 0.12 deleterious(0.03) benign(0.026) TCGA-GM-A2DH-01 4 41615638 41615638 G C LIMCH1 Missense_Mutation p.Q214H 0.11 tolerated(0.32) probably_damaging(0.998) TCGA-GM-A2DH-01 4 48859247 48859247 G C OCIAD1 Missense_Mutation p.E189Q 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-GM-A2DH-01 4 57676252 57676252 C G SPINK2 3'UTR 0.28 TCGA-GM-A2DH-01 4 57676253 57676253 T A SPINK2 3'UTR 0.28 TCGA-GM-A2DH-01 4 76439563 76439563 G T RCHY1 5'UTR 0.20 TCGA-GM-A2DH-01 4 83381234 83381234 C T ENOPH1 Silent p.I249I 0.09 TCGA-GM-A2DH-01 5 108521904 108521904 G A FER Missense_Mutation p.R736K 0.21 tolerated(0.19) probably_damaging(0.993) TCGA-GM-A2DH-01 5 127681110 127681110 G A FBN2 Silent p.C1052C 0.20 TCGA-GM-A2DH-01 5 138386681 138386681 C G SIL1 Missense_Mutation p.R100T 0.06 deleterious(0) possibly_damaging(0.543) TCGA-GM-A2DH-01 5 142283104 142283104 G T ARHGAP26 Splice_Site p.X235_splice 0.27 TCGA-GM-A2DH-01 5 150696358 150696358 G A SLC36A2 3'UTR 0.13 TCGA-GM-A2DH-01 5 180665277 180665277 C T GNB2L1 Intron 0.12 TCGA-GM-A2DH-01 5 33997537 33997537 G T AMACR Intron 0.05 TCGA-GM-A2DH-01 5 40843812 40843812 G A CARD6 Splice_Site p.X281_splice 0.10 TCGA-GM-A2DH-01 6 100897298 100897298 G A SIM1 Silent p.L162L 0.38 TCGA-GM-A2DH-01 6 101109699 101109699 C G ASCC3 Missense_Mutation p.D896H 0.10 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 6 116783050 116783050 G A FAM26F 5'UTR 0.38 TCGA-GM-A2DH-01 6 138417588 138417588 G A PERP Silent p.I86I 0.06 TCGA-GM-A2DH-01 6 138607951 138607951 C T KIAA1244 Silent p.L895L 0.07 TCGA-GM-A2DH-01 6 146755484 146755484 C A GRM1 Missense_Mutation p.P1046Q 0.19 tolerated_low_confidence(0.16) benign(0.18) TCGA-GM-A2DH-01 6 149068597 149068597 G C UST Missense_Mutation p.G11R 0.62 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-GM-A2DH-01 6 155124751 155124751 C T SCAF8 Missense_Mutation p.S286L 0.29 deleterious(0) unknown(0) TCGA-GM-A2DH-01 6 157454259 157454259 G C ARID1B Missense_Mutation p.Q823H 0.06 probably_damaging(0.998) TCGA-GM-A2DH-01 6 26637672 26637672 C T ZNF322 Silent p.Q370Q 0.05 TCGA-GM-A2DH-01 6 31607387 31607387 C G BAG6 Missense_Mutation p.E1065Q 0.07 deleterious(0.03) benign(0.403) TCGA-GM-A2DH-01 6 33656443 33656443 G A ITPR3 Silent p.L2193L 0.09 TCGA-GM-A2DH-01 6 41185634 41185634 G C TREML3P RNA 0.14 TCGA-GM-A2DH-01 6 43266439 43266439 C G SLC22A7 Missense_Mutation p.Q115E 0.09 tolerated(0.2) benign(0.03) TCGA-GM-A2DH-01 6 46657345 46657345 G C TDRD6 Missense_Mutation p.E494Q 0.11 tolerated(0.08) benign(0.158) TCGA-GM-A2DH-01 6 46660141 46660154 CCTGACAATAAAAA - TDRD6 Frame_Shift_Del p.P1426Ffs*2 0.18 TCGA-GM-A2DH-01 6 46978054 46978054 C A GPR110 Missense_Mutation p.D373Y 0.06 deleterious(0.03) possibly_damaging(0.8) TCGA-GM-A2DH-01 6 52661102 52661102 C G GSTA1 Missense_Mutation p.L50F 0.05 deleterious(0.04) benign(0.071) TCGA-GM-A2DH-01 6 56468688 56468688 C T DST Intron 0.14 TCGA-GM-A2DH-01 6 7414486 7414486 G C RIOK1 Missense_Mutation p.E487Q 0.05 tolerated(0.15) benign(0.141) TCGA-GM-A2DH-01 6 79664553 79664553 G C PHIP Missense_Mutation p.P1344R 0.07 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 6 82459816 82459816 C T FAM46A Missense_Mutation p.D309N 0.09 tolerated(0.07) benign(0.103) TCGA-GM-A2DH-01 7 100061589 100061589 G A C7orf61 Silent p.S20S 0.10 TCGA-GM-A2DH-01 7 104808475 104808475 C T SRPK2 Missense_Mutation p.E136K 0.20 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DH-01 7 113518095 113518095 G C PPP1R3A Missense_Mutation p.L1018V 0.11 tolerated(0.51) benign(0.003) TCGA-GM-A2DH-01 7 146536868 146536868 C A CNTNAP2 Silent p.R92R 0.21 TCGA-GM-A2DH-01 7 150648600 150648600 G A KCNH2 Silent p.F627F 0.35 TCGA-GM-A2DH-01 7 1786622 1786622 G A ELFN1 Missense_Mutation p.G797D 0.24 deleterious(0) probably_damaging(1) TCGA-GM-A2DH-01 7 1786623 1786623 C A ELFN1 Silent p.G797G 0.25 TCGA-GM-A2DH-01 7 20199064 20199064 T G MACC1 Missense_Mutation p.E307A 0.14 tolerated(0.2) benign(0.26) TCGA-GM-A2DH-01 7 2954887 2954887 C G CARD11 Missense_Mutation p.L941F 0.10 tolerated(0.21) benign(0.002) TCGA-GM-A2DH-01 7 36459901 36459901 G T ANLN Nonsense_Mutation p.E665* 0.07 TCGA-GM-A2DH-01 7 5770405 5770405 C G RNF216 Missense_Mutation p.E389Q 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-GM-A2DH-01 7 66418242 66418242 C T TMEM248 Silent p.L270L 0.05 TCGA-GM-A2DH-01 7 84628755 84628755 A T SEMA3D 3'UTR 0.11 TCGA-GM-A2DH-01 7 88962693 88962693 C T ZNF804B Missense_Mutation p.P133S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-GM-A2DH-01 7 94053655 94053655 C T COL1A2 Missense_Mutation p.P858L 0.11 unknown(0) TCGA-GM-A2DH-01 8 105001536 105001536 G A RIMS2 Silent p.R977R 0.10 TCGA-GM-A2DH-01 8 125577935 125577935 G A MTSS1 Silent p.S264S 0.17 TCGA-GM-A2DH-01 8 134030036 134030036 C A TG Silent p.L2192L 0.15 TCGA-GM-A2DH-01 8 22054840 22054840 G A BMP1 Missense_Mutation p.E672K 0.23 tolerated(0.2) possibly_damaging(0.753) TCGA-GM-A2DH-01 9 119414062 119414062 C G ASTN2 Missense_Mutation p.E888D 0.09 tolerated_low_confidence(0.13) unknown(0) TCGA-GM-A2DH-01 9 12704689 12704689 G A TYRP1 Silent p.L415L 0.13 TCGA-GM-A2DH-01 9 132636923 132636923 C G USP20 Silent p.V603V 0.34 TCGA-GM-A2DH-01 9 21304986 21304986 G C IFNA5 Silent p.L90L 0.12 TCGA-GM-A2DH-01 9 77403596 77403596 C A TRPM6 Missense_Mutation p.Q867H 0.28 tolerated(0.56) possibly_damaging(0.687) TCGA-GM-A2DH-01 9 77415343 77415343 G A TRPM6 Missense_Mutation p.R689C 0.37 deleterious(0.01) possibly_damaging(0.776) TCGA-GM-A2DH-01 9 79322731 79322731 G A PRUNE2 Nonsense_Mutation p.R1487* 0.24 TCGA-GM-A2DH-01 9 84562587 84562587 A G RP11-383M4.6 Intron 0.11 TCGA-GM-A2DH-01 X 111025166 111025166 G A TRPC5 Silent p.F699F 0.18 TCGA-GM-A2DH-01 X 11779630 11779630 T C MSL3 Missense_Mutation p.S132P 0.19 deleterious(0.02) benign(0.044) TCGA-GM-A2DH-01 X 119005194 119005194 C T RNF113A Missense_Mutation p.R128H 0.13 tolerated(0.19) benign(0.008) TCGA-GM-A2DH-01 X 122528859 122528859 G A GRIA3 Missense_Mutation p.G264E 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-GM-A2DH-01 X 123516579 123516579 C T TENM1 Missense_Mutation p.E2461K 0.08 deleterious(0.03) benign(0.007) TCGA-GM-A2DH-01 X 133906240 133906240 C T FAM122B Missense_Mutation p.A244T 0.14 tolerated(0.96) benign(0.012) TCGA-GM-A2DH-01 X 13680946 13680946 C G TCEANC Missense_Mutation p.H137D 0.29 tolerated(0.46) benign(0.108) TCGA-GM-A2DH-01 X 154736589 154736589 T C TMLHE Missense_Mutation p.Y322C 0.05 deleterious(0.03) probably_damaging(0.971) TCGA-GM-A2DH-01 X 96854440 96854440 G C DIAPH2 3'UTR 0.50 TCGA-GM-A2DH-01 X 99663461 99663461 G A PCDH19 Silent p.D45D 0.44 TCGA-GM-A2DI-01 10 124697461 124697461 G C C10orf88 Missense_Mutation p.S288C 0.09 deleterious(0.02) possibly_damaging(0.634) TCGA-GM-A2DI-01 10 127371598 127371598 C T TEX36 5'UTR 0.08 TCGA-GM-A2DI-01 10 72630851 72630851 C G SGPL1 Missense_Mutation p.S286C 0.07 deleterious(0) probably_damaging(0.994) TCGA-GM-A2DI-01 10 79556300 79556300 C T DLG5 Silent p.L1739L 0.13 TCGA-GM-A2DI-01 10 97397121 97397121 G A ALDH18A1 Missense_Mutation p.R126C 0.11 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DI-01 11 108593880 108593880 C A DDX10 Missense_Mutation p.F552L 0.06 tolerated(0.28) benign(0.008) TCGA-GM-A2DI-01 11 33369709 33369709 C T HIPK3 Intron 0.11 TCGA-GM-A2DI-01 11 47367798 47367798 C T MYBPC3 Silent p.K350K 0.11 TCGA-GM-A2DI-01 11 837589 837589 G C CD151 Missense_Mutation p.D196H 0.10 deleterious(0.03) possibly_damaging(0.776) TCGA-GM-A2DI-01 12 122186340 122186340 G A TMEM120B Silent p.K99K 0.18 TCGA-GM-A2DI-01 12 122199562 122199562 G T TMEM120B Missense_Mutation p.D157Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DI-01 12 122218686 122218686 G A TMEM120B 3'UTR 0.27 TCGA-GM-A2DI-01 12 122219101 122219101 G T RHOF Intron 0.14 TCGA-GM-A2DI-01 12 122248732 122248732 G A SETD1B Silent p.K627K 0.09 TCGA-GM-A2DI-01 12 122257483 122257483 G A SETD1B Missense_Mutation p.E1155K 0.07 unknown(0) TCGA-GM-A2DI-01 12 46764610 46764610 C T SLC38A2 Silent p.Q49Q 0.09 TCGA-GM-A2DI-01 12 49523447 49523447 C T TUBA1B Nonsense_Mutation p.W21* 0.08 TCGA-GM-A2DI-01 12 56217190 56217190 C T DNAJC14 Missense_Mutation p.E504K 0.11 deleterious(0) probably_damaging(0.948) TCGA-GM-A2DI-01 12 5853403 5853403 G A ANO2 Missense_Mutation p.S420L 0.13 deleterious(0) possibly_damaging(0.628) TCGA-GM-A2DI-01 12 66788018 66788018 G C GRIP1 Nonsense_Mutation p.S648* 0.14 TCGA-GM-A2DI-01 12 76740119 76740119 G A BBS10 Missense_Mutation p.S549L 0.08 tolerated(0.19) benign(0.045) TCGA-GM-A2DI-01 13 20593834 20593834 G C ZMYM2 Intron 0.14 TCGA-GM-A2DI-01 13 29287565 29287565 C T SLC46A3 Missense_Mutation p.M104I 0.17 tolerated(0.83) benign(0.002) TCGA-GM-A2DI-01 13 95847154 95847154 C T ABCC4 Missense_Mutation p.R400H 0.15 tolerated(0.25) benign(0) TCGA-GM-A2DI-01 14 101488470 101488470 C T MIR379 RNA 0.06 TCGA-GM-A2DI-01 14 21868763 21868763 C T CHD8 Missense_Mutation p.R1460Q 0.16 deleterious(0) benign(0.381) TCGA-GM-A2DI-01 14 23057891 23057891 G A DAD1 Missense_Mutation p.S58L 0.18 deleterious(0) possibly_damaging(0.586) TCGA-GM-A2DI-01 14 24662250 24662250 C T TM9SF1 Missense_Mutation p.G191R 0.07 deleterious(0.05) benign(0.007) TCGA-GM-A2DI-01 14 24687336 24687336 C A NEDD8 Intron 0.06 TCGA-GM-A2DI-01 14 58690363 58690363 C G ACTR10 Missense_Mutation p.L220V 0.13 tolerated(0.08) possibly_damaging(0.696) TCGA-GM-A2DI-01 14 89878581 89878581 G A FOXN3 Silent p.V80V 0.07 TCGA-GM-A2DI-01 15 83788390 83788390 C G TM6SF1 Missense_Mutation p.H119D 0.09 deleterious(0) probably_damaging(0.986) TCGA-GM-A2DI-01 16 2334817 2334817 G A ABCA3 Silent p.I1222I 0.09 TCGA-GM-A2DI-01 16 24802459 24802459 G A TNRC6A Silent p.S832S 0.16 TCGA-GM-A2DI-01 16 30103939 30103939 A C YPEL3 3'UTR 0.14 TCGA-GM-A2DI-01 16 70713737 70713737 C T MTSS1L Missense_Mutation p.E112K 0.11 deleterious(0.01) benign(0.06) TCGA-GM-A2DI-01 17 27075619 27075619 C G TRAF4 Missense_Mutation p.L239V 0.13 tolerated(0.07) benign(0.232) TCGA-GM-A2DI-01 17 27287972 27287972 G A SEZ6 Silent p.I420I 0.10 TCGA-GM-A2DI-01 17 4100755 4100755 G C ANKFY1 Nonsense_Mutation p.S381* 0.10 TCGA-GM-A2DI-01 19 46388386 46388386 C T IRF2BP1 Missense_Mutation p.R216Q 0.19 deleterious(0.02) possibly_damaging(0.602) TCGA-GM-A2DI-01 19 46815415 46815415 C T HIF3A Intron 0.13 TCGA-GM-A2DI-01 19 49658299 49658299 C G HRC Missense_Mutation p.D66H 0.08 deleterious(0) benign(0.36) TCGA-GM-A2DI-01 19 9362042 9362042 G C OR7E24 Missense_Mutation p.R108T 0.09 tolerated(0.13) benign(0.013) TCGA-GM-A2DI-01 1 154062065 154062065 G A NUP210L Silent p.L731L 0.18 TCGA-GM-A2DI-01 1 215933077 215933077 C T USH2A Missense_Mutation p.R3719H 0.11 probably_damaging(0.991) TCGA-GM-A2DI-01 1 27059207 27059207 C - ARID1A Frame_Shift_Del p.S617Qfs*2 0.20 TCGA-GM-A2DI-01 1 44137188 44137188 C T KDM4A Missense_Mutation p.S459F 0.06 deleterious(0.02) benign(0.023) TCGA-GM-A2DI-01 20 33114085 33114085 G A DYNLRB1 Missense_Mutation p.E6K 0.07 deleterious(0) possibly_damaging(0.904) TCGA-GM-A2DI-01 20 62076703 62076703 G A KCNQ2 Silent p.I134I 0.07 TCGA-GM-A2DI-01 21 33974174 33974174 C T C21orf59 Silent p.%3D 0.15 TCGA-GM-A2DI-01 2 102486772 102486772 G C MAP4K4 Missense_Mutation p.L804F 0.10 tolerated_low_confidence(0.6) probably_damaging(0.922) TCGA-GM-A2DI-01 2 118577236 118577236 G A DDX18 Missense_Mutation p.A128T 0.05 tolerated(0.21) benign(0.003) TCGA-GM-A2DI-01 2 141356269 141356269 C T LRP1B Silent p.E2375E 0.13 TCGA-GM-A2DI-01 2 234198929 234198929 G A ATG16L1 Missense_Mutation p.D454N 0.15 deleterious(0) probably_damaging(0.995) TCGA-GM-A2DI-01 2 33534582 33534582 G A LTBP1 Missense_Mutation p.C1188Y 0.18 deleterious(0) probably_damaging(1) TCGA-GM-A2DI-01 2 43971096 43971096 G C PLEKHH2 Missense_Mutation p.D1175H 0.07 deleterious(0.02) benign(0.093) TCGA-GM-A2DI-01 2 96953252 96953252 C T SNRNP200 Missense_Mutation p.E1137K 0.11 tolerated(0.56) benign(0.081) TCGA-GM-A2DI-01 3 140281083 140281083 C T CLSTN2 Silent p.L715L 0.05 TCGA-GM-A2DI-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-GM-A2DI-01 3 42739636 42739636 G C HHATL Missense_Mutation p.Q231E 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-GM-A2DI-01 4 100470327 100470327 C T TRMT10A Missense_Mutation p.R313K 0.10 tolerated(0.08) benign(0.073) TCGA-GM-A2DI-01 4 108866239 108866239 G A CYP2U1 Missense_Mutation p.E202K 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-GM-A2DI-01 4 165962158 165962158 G C TRIM60 Missense_Mutation p.E312Q 0.13 deleterious(0.03) possibly_damaging(0.583) TCGA-GM-A2DI-01 4 3176466 3176466 G C HTT Missense_Mutation p.Q1395H 0.15 probably_damaging(0.976) TCGA-GM-A2DI-01 4 55948765 55948765 C T KDR Missense_Mutation p.V1234M 0.08 tolerated(0.1) possibly_damaging(0.822) TCGA-GM-A2DI-01 4 73941980 73941980 T A ANKRD17 Missense_Mutation p.M2594L 0.10 benign(0) TCGA-GM-A2DI-01 4 7783258 7783258 G A AFAP1 Missense_Mutation p.P543S 0.08 tolerated(0.42) benign(0.12) TCGA-GM-A2DI-01 5 112177102 112177102 C T APC Silent p.S1937S 0.19 TCGA-GM-A2DI-01 5 140516626 140516626 C T PCDHB5 Missense_Mutation p.S537F 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.503) TCGA-GM-A2DI-01 5 146804484 146804484 C T DPYSL3 Missense_Mutation p.D142N 0.09 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DI-01 5 150858892 150858892 C T SLC36A1 Missense_Mutation p.S334L 0.12 tolerated(0.35) benign(0.208) TCGA-GM-A2DI-01 5 37348661 37348661 C G NUP155 Missense_Mutation p.R314T 0.10 deleterious(0.04) probably_damaging(0.969) TCGA-GM-A2DI-01 6 111498790 111498790 C T SLC16A10 Silent p.F288F 0.14 TCGA-GM-A2DI-01 6 117215200 117215200 C T RFX6 Missense_Mutation p.S206F 0.08 tolerated(0.09) benign(0.439) TCGA-GM-A2DI-01 6 26123919 26123919 C G HIST1H2BC Missense_Mutation p.E72Q 0.10 deleterious_low_confidence(0.02) benign(0.213) TCGA-GM-A2DI-01 6 26250666 26250666 C G HIST1H3F Missense_Mutation p.Q56H 0.07 deleterious_low_confidence(0.01) benign(0.224) TCGA-GM-A2DI-01 6 2900832 2900832 G A SERPINB9 Missense_Mutation p.S5F 0.08 tolerated(0.09) probably_damaging(0.978) TCGA-GM-A2DI-01 6 33659687 33659687 C T ITPR3 Silent p.L2480L 0.07 TCGA-GM-A2DI-01 6 7584156 7584156 G A DSP Missense_Mutation p.E2221K 0.10 possibly_damaging(0.548) TCGA-GM-A2DI-01 7 134672670 134672670 C G AGBL3 5'UTR 0.06 TCGA-GM-A2DI-01 8 134024263 134024263 G A TG Missense_Mutation p.R2127Q 0.12 tolerated(0.12) benign(0.015) TCGA-GM-A2DI-01 8 95419932 95419932 G A RAD54B Silent p.F172F 0.09 TCGA-GM-A2DI-01 9 128432180 128432180 C G MAPKAP1 Missense_Mutation p.R89T 0.06 deleterious(0) possibly_damaging(0.857) TCGA-GM-A2DI-01 9 21029310 21029310 G C PTPLAD2 Missense_Mutation p.F42L 0.09 tolerated(0.48) benign(0.037) TCGA-GM-A2DI-01 9 4679810 4679810 C G CDC37L1 Missense_Mutation p.R15G 0.15 tolerated_low_confidence(0.06) probably_damaging(0.982) TCGA-GM-A2DI-01 X 114141728 114141728 G A HTR2C Missense_Mutation p.R376Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DI-01 X 117529291 117529291 G C WDR44 Missense_Mutation p.R346T 0.19 deleterious(0) possibly_damaging(0.778) TCGA-GM-A2DI-01 X 128963033 128963033 C A ZDHHC9 Missense_Mutation p.L84F 0.09 tolerated(0.18) probably_damaging(0.998) TCGA-GM-A2DI-01 X 130215558 130215558 C T ARHGAP36 5'UTR 0.22 TCGA-GM-A2DI-01 X 31950306 31950306 C G DMD Missense_Mutation p.R2218T 0.08 benign(0.402) TCGA-GM-A2DI-01 X 77224999 77224999 C T PGAM4 Missense_Mutation p.R46Q 0.12 tolerated(0.09) benign(0.001) TCGA-GM-A2DI-01 X 79951434 79951434 C T BRWD3 Missense_Mutation p.E1042K 0.17 tolerated(0.05) possibly_damaging(0.829) TCGA-GM-A2DK-01 12 113435338 113435338 T A OAS2 Missense_Mutation p.I214N 0.30 tolerated(0.37) benign(0) TCGA-GM-A2DK-01 12 55038481 55038481 C T DCD 3'UTR 0.10 TCGA-GM-A2DK-01 12 57696988 57696988 T C R3HDM2 Missense_Mutation p.N60D 0.43 tolerated(0.09) benign(0.046) TCGA-GM-A2DK-01 13 41885656 41885656 C G NAA16 5'UTR 0.37 TCGA-GM-A2DK-01 15 33359980 33359980 T G FMN1 Missense_Mutation p.K36Q 0.17 deleterious_low_confidence(0) unknown(0) TCGA-GM-A2DK-01 15 66795773 66795773 C T RPL4 Missense_Mutation p.R33Q 0.05 deleterious(0.01) probably_damaging(0.954) TCGA-GM-A2DK-01 15 79586179 79586179 T C ANKRD34C Missense_Mutation p.C185R 0.05 deleterious(0) possibly_damaging(0.812) TCGA-GM-A2DK-01 15 79760745 79760745 C T KIAA1024 3'UTR 0.08 TCGA-GM-A2DK-01 16 27514316 27514316 C A GTF3C1 Nonsense_Mutation p.E591* 0.04 TCGA-GM-A2DK-01 16 50388767 50388767 C A BRD7 Missense_Mutation p.A109S 0.21 tolerated(0.31) benign(0.007) TCGA-GM-A2DK-01 16 70817042 70817042 C T VAC14 Missense_Mutation p.M235I 0.30 tolerated(0.07) benign(0.01) TCGA-GM-A2DK-01 17 38450651 38450651 C T CDC6 Silent p.L327L 0.12 TCGA-GM-A2DK-01 17 42333063 42333063 T C SLC4A1 Missense_Mutation p.N593S 0.29 deleterious(0.02) probably_damaging(0.919) TCGA-GM-A2DK-01 17 43515154 43515154 T C PLEKHM1 3'UTR 0.14 TCGA-GM-A2DK-01 17 46804051 46804051 G A HOXB13 3'UTR 0.25 TCGA-GM-A2DK-01 17 76522783 76522783 C T DNAH17 Missense_Mutation p.E1221K 0.28 benign(0.001) TCGA-GM-A2DK-01 19 54578326 54578326 C T TARM1 Silent p.S37S 0.38 TCGA-GM-A2DK-01 1 33117549 33117549 C A RBBP4 Silent p.I17I 0.18 TCGA-GM-A2DK-01 1 43803507 43803507 A G MPL 5'UTR 0.27 TCGA-GM-A2DK-01 20 62175619 62175619 G A SRMS Missense_Mutation p.R147W 0.12 deleterious(0) probably_damaging(0.997) TCGA-GM-A2DK-01 2 203420014 203420014 T C BMPR2 Silent p.P542P 0.18 TCGA-GM-A2DK-01 2 61233764 61233764 A C PUS10 Silent p.V132V 0.18 TCGA-GM-A2DK-01 2 71014794 71014794 G T FIGLA Missense_Mutation p.A124D 0.22 deleterious(0) possibly_damaging(0.77) TCGA-GM-A2DK-01 3 88039908 88039908 C T HTR1F Silent p.F3F 0.11 TCGA-GM-A2DK-01 4 165878324 165878324 C T FAM218A Silent p.T50T 0.13 TCGA-GM-A2DK-01 4 85742538 85742538 A G WDFY3 Silent p.F430F 0.33 TCGA-GM-A2DK-01 5 139221926 139221926 G A PSD2 Missense_Mutation p.R728Q 0.33 tolerated(0.49) benign(0.063) TCGA-GM-A2DK-01 5 140215417 140215417 C T PCDHA7 Silent p.D483D 0.09 TCGA-GM-A2DK-01 5 63256637 63256637 G A HTR1A Missense_Mutation p.H304Y 0.18 deleterious(0.03) probably_damaging(0.935) TCGA-GM-A2DK-01 6 13273143 13273143 G A TBC1D7 Intron 0.20 TCGA-GM-A2DK-01 6 136904772 136904773 GA - MAP3K5 Frame_Shift_Del p.S1111Kfs*14 0.25 TCGA-GM-A2DK-01 6 152560688 152560688 C G SYNE1 Missense_Mutation p.E6683Q 0.17 benign(0.183) TCGA-GM-A2DK-01 8 86572131 86572131 T C REXO1L1P 3'UTR 0.17 TCGA-GM-A2DK-01 9 105767473 105767473 A C CYLC2 Missense_Mutation p.K187T 0.25 tolerated(0.1) unknown(0) TCGA-GM-A2DK-01 9 37784879 37784879 G T EXOSC3 Missense_Mutation p.L55M 0.15 tolerated(0.05) probably_damaging(0.981) TCGA-GM-A2DK-01 X 117777490 117777490 T C DOCK11 Missense_Mutation p.L1444P 0.31 deleterious(0) probably_damaging(0.991) TCGA-GM-A2DK-01 X 46736940 46736940 G A RP2 Missense_Mutation p.G295D 0.13 deleterious(0) probably_damaging(0.985) TCGA-GM-A2DK-01 X 50213529 50213529 G A DGKK RNA 0.06 TCGA-GM-A2DL-01 10 32128240 32128240 C A ARHGAP12 Missense_Mutation p.S460I 0.34 tolerated(0.16) benign(0) TCGA-GM-A2DL-01 10 83635435 83635435 C A NRG3 Missense_Mutation p.F113L 0.22 deleterious(0.04) benign(0.057) TCGA-GM-A2DL-01 11 126075441 126075441 C G RPUSD4 Missense_Mutation p.A240P 0.45 deleterious(0) probably_damaging(0.958) TCGA-GM-A2DL-01 11 49168403 49168403 C T FOLH1 Missense_Mutation p.D720N 0.20 tolerated(0.09) benign(0.033) TCGA-GM-A2DL-01 11 89450991 89450991 G A TRIM77 Missense_Mutation p.R435H 0.42 tolerated(0.32) possibly_damaging(0.854) TCGA-GM-A2DL-01 12 124886970 124886970 G - NCOR2 Frame_Shift_Del p.N540Kfs*70 0.31 TCGA-GM-A2DL-01 12 54108452 54108452 T G CALCOCO1 Missense_Mutation p.E471A 0.21 deleterious(0) possibly_damaging(0.803) TCGA-GM-A2DL-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.31 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DL-01 14 33015979 33015979 C T AKAP6 Missense_Mutation p.S707L 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-GM-A2DL-01 14 52899269 52899269 G - TXNDC16 Frame_Shift_Del p.P744Qfs*6 0.28 TCGA-GM-A2DL-01 15 73616015 73616015 G A HCN4 Missense_Mutation p.R807C 0.22 tolerated(0.09) unknown(0) TCGA-GM-A2DL-01 16 3493198 3493198 G A ZNF597 5'UTR 0.17 TCGA-GM-A2DL-01 17 7577095 7577095 G T TP53 Missense_Mutation p.D281E 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-GM-A2DL-01 18 72999678 72999678 G A TSHZ1 Silent p.A727A 0.43 TCGA-GM-A2DL-01 18 8296407 8296407 G C PTPRM Missense_Mutation p.K932N 0.42 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DL-01 19 5595489 5595489 C A SAFB2 Missense_Mutation p.R601L 0.21 deleterious(0) probably_damaging(0.994) TCGA-GM-A2DL-01 1 152800020 152800020 C T LCE1A Silent p.C24C 0.26 TCGA-GM-A2DL-01 1 16271429 16271429 C A ZBTB17 Intron 0.26 TCGA-GM-A2DL-01 1 196367792 196367792 T G KCNT2 Missense_Mutation p.T399P 0.34 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DL-01 1 232534682 232534682 G A SIPA1L2 3'UTR 0.36 TCGA-GM-A2DL-01 1 62166636 62166636 C G TM2D1 Missense_Mutation p.D199H 0.32 deleterious(0.02) probably_damaging(1) TCGA-GM-A2DL-01 1 93730309 93730309 C G CCDC18 Missense_Mutation p.Q1299E 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-GM-A2DL-01 20 5753620 5753620 G A C20orf196 Missense_Mutation p.E37K 0.33 tolerated(0.08) benign(0.014) TCGA-GM-A2DL-01 22 41521913 41521913 C T EP300 Nonsense_Mutation p.Q259* 0.42 TCGA-GM-A2DL-01 3 100489698 100489698 C T ABI3BP Missense_Mutation p.A833T 0.21 deleterious(0.04) probably_damaging(0.956) TCGA-GM-A2DL-01 3 186937707 186937707 G T MASP1 3'UTR 0.20 TCGA-GM-A2DL-01 3 41942241 41942241 G A ULK4 Silent p.V421V 0.36 TCGA-GM-A2DL-01 3 9874880 9874880 G A TTLL3 Missense_Mutation p.M692I 0.24 tolerated(0.2) benign(0.004) TCGA-GM-A2DL-01 5 100238563 100238563 C A ST8SIA4 Nonsense_Mutation p.E33* 0.29 TCGA-GM-A2DL-01 5 167674807 167674807 G T TENM2 Missense_Mutation p.R2288I 0.21 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DL-01 5 169714981 169714981 G A LCP2 Missense_Mutation p.R61W 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-GM-A2DL-01 5 55202014 55202014 G T IL31RA Missense_Mutation p.V384L 0.23 deleterious(0) possibly_damaging(0.793) TCGA-GM-A2DL-01 5 94877078 94877078 G T TTC37 Missense_Mutation p.D111E 0.38 deleterious(0.03) benign(0.04) TCGA-GM-A2DL-01 6 152804248 152804248 G A SYNE1 Missense_Mutation p.T441M 0.30 benign(0.432) TCGA-GM-A2DL-01 6 18139900 18139900 G A TPMT Missense_Mutation p.P139S 0.38 tolerated(1) benign(0.003) TCGA-GM-A2DL-01 6 85472399 85472399 C G TBX18 Silent p.G120G 0.21 TCGA-GM-A2DL-01 7 28763936 28763936 C T CREB5 Missense_Mutation p.S230L 0.10 deleterious(0.03) probably_damaging(0.985) TCGA-GM-A2DL-01 7 71275372 71275372 C A CALN1 Nonsense_Mutation p.E203* 0.22 TCGA-GM-A2DL-01 9 127262398 127262398 G A NR5A1 Missense_Mutation p.R281C 0.24 deleterious(0) probably_damaging(1) TCGA-GM-A2DL-01 9 135205171 135205171 A C SETX Missense_Mutation p.F605C 0.20 tolerated(0.15) possibly_damaging(0.682) TCGA-GM-A2DL-01 X 101818873 101818873 G A NXF4 RNA 0.17 TCGA-GM-A2DL-01 X 102931276 102931276 T G MORF4L2 Missense_Mutation p.H227P 0.28 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DL-01 X 109694771 109694771 C T RGAG1 Missense_Mutation p.S309L 0.32 deleterious(0.04) benign(0.237) TCGA-GM-A2DL-01 X 114426304 114426304 C A RBMXL3 Missense_Mutation p.S767Y 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.608) TCGA-GM-A2DL-01 X 122830637 122830637 G T THOC2 Nonsense_Mutation p.S134* 0.25 TCGA-GM-A2DL-01 X 129201241 129201241 G A ELF4 Missense_Mutation p.L483F 0.36 tolerated(0.34) probably_damaging(0.998) TCGA-GM-A2DL-01 X 135427511 135427511 C T GPR112 Missense_Mutation p.S549L 0.31 deleterious(0) benign(0.025) TCGA-GM-A2DL-01 X 148607482 148607482 C A IDS Intron 0.10 TCGA-GM-A2DL-01 X 20206613 20206613 A G RPS6KA3 Splice_Site p.X211_splice 0.19 TCGA-GM-A2DL-01 X 70586301 70586301 T C TAF1 Missense_Mutation p.I46T 0.28 deleterious(0) benign(0.431) TCGA-GM-A2DL-01 X 84537147 84537147 C A POF1B Intron 0.07 TCGA-GM-A2DM-01 10 112544591 112544591 G A RBM20 Missense_Mutation p.A491T 0.37 tolerated(0.25) benign(0.063) TCGA-GM-A2DM-01 10 32099598 32099598 T C ARHGAP12 Missense_Mutation p.I677V 0.07 deleterious(0.02) benign(0.007) TCGA-GM-A2DM-01 15 54847664 54847664 C T UNC13C Missense_Mutation p.T1971M 0.33 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-GM-A2DM-01 15 88420205 88420205 C A NTRK3 Missense_Mutation p.L827F 0.25 deleterious(0) benign(0.403) TCGA-GM-A2DM-01 16 16139859 16139859 G T ABCC1 Missense_Mutation p.V403F 0.23 deleterious(0) possibly_damaging(0.903) TCGA-GM-A2DM-01 1 152190761 152190761 T A HRNR Missense_Mutation p.Y1115F 0.29 unknown(0) TCGA-GM-A2DM-01 1 228494729 228494729 C A OBSCN Silent p.L4975L 0.26 TCGA-GM-A2DM-01 1 228505626 228505626 C T OBSCN Missense_Mutation p.S5585L 0.22 benign(0.006) TCGA-GM-A2DM-01 1 228505670 228505670 C T OBSCN Silent p.L5600L 0.31 TCGA-GM-A2DM-01 1 892291 892291 A G NOC2L Missense_Mutation p.W157R 0.29 deleterious(0) probably_damaging(0.993) TCGA-GM-A2DM-01 1 892292 892292 T A NOC2L Missense_Mutation p.R156S 0.29 tolerated(0.16) benign(0.071) TCGA-GM-A2DM-01 21 35757864 35757864 A G SMIM11 Missense_Mutation p.Q34R 0.38 deleterious(0) probably_damaging(0.994) TCGA-GM-A2DM-01 22 29191150 29191150 A T XBP1 3'UTR 0.08 TCGA-GM-A2DM-01 22 42609486 42609486 G C TCF20 Missense_Mutation p.S609C 0.29 probably_damaging(0.984) TCGA-GM-A2DM-01 2 136567501 136567501 C T LCT Missense_Mutation p.E806K 0.35 deleterious(0) probably_damaging(0.974) TCGA-GM-A2DM-01 2 152276813 152276813 A G RIF1 Missense_Mutation p.T205A 0.35 tolerated(0.29) benign(0.226) TCGA-GM-A2DM-01 2 97024816 97024816 C T NCAPH Silent p.I414I 0.07 TCGA-GM-A2DM-01 3 98539113 98539113 G A DCBLD2 Missense_Mutation p.L284F 0.18 tolerated(0.12) possibly_damaging(0.665) TCGA-GM-A2DM-01 5 112179735 112179735 A G APC Missense_Mutation p.K2815R 0.11 probably_damaging(0.999) TCGA-GM-A2DM-01 5 121188158 121188158 A G FTMT Missense_Mutation p.E167G 0.18 deleterious(0.02) possibly_damaging(0.804) TCGA-GM-A2DM-01 5 138209483 138209483 T C LRRTM2 Missense_Mutation p.E256G 0.31 deleterious(0) possibly_damaging(0.582) TCGA-GM-A2DM-01 5 93217183 93217183 T C FAM172A Missense_Mutation p.Y260C 0.24 tolerated(0.17) benign(0.312) TCGA-GM-A2DM-01 6 37623624 37623624 C T MDGA1 Missense_Mutation p.R144Q 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-GM-A2DM-01 7 57187569 57187569 T C ZNF479 Missense_Mutation p.E518G 0.45 deleterious(0.03) probably_damaging(0.994) TCGA-GM-A2DM-01 7 88963668 88963668 C A ZNF804B Missense_Mutation p.P458T 0.15 deleterious(0) probably_damaging(1) TCGA-GM-A2DM-01 7 88963713 88963713 T C ZNF804B Missense_Mutation p.Y473H 0.12 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DM-01 X 73962855 73962855 C T KIAA2022 Missense_Mutation p.V513I 0.35 tolerated(0.32) benign(0) TCGA-GM-A2DN-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.18 TCGA-GM-A2DN-01 11 1266862 1266862 C T MUC5B Missense_Mutation p.R2918C 0.12 unknown(0) TCGA-GM-A2DN-01 12 101767217 101767217 T C UTP20 Missense_Mutation p.M2306T 0.08 deleterious(0.02) benign(0.191) TCGA-GM-A2DN-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.17 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DN-01 14 96730636 96730636 T C BDKRB1 Missense_Mutation p.L206S 0.21 deleterious(0) probably_damaging(0.993) TCGA-GM-A2DN-01 15 73616120 73616120 C T HCN4 Missense_Mutation p.V772I 0.14 tolerated(0.07) unknown(0) TCGA-GM-A2DN-01 17 57725727 57725727 T C CLTC Missense_Mutation p.F216L 0.11 tolerated(0.13) benign(0.135) TCGA-GM-A2DN-01 17 77809442 77809443 - AAT CBX4 Intron 0.21 TCGA-GM-A2DN-01 19 18705148 18705148 A T CRLF1 Missense_Mutation p.L374H 0.23 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-GM-A2DN-01 19 49398637 49398637 G A TULP2 Missense_Mutation p.P112L 0.15 tolerated(0.07) benign(0.003) TCGA-GM-A2DN-01 19 8131020 8131020 C T FBN3 Missense_Mutation p.R2738H 0.20 tolerated(0.08) benign(0.046) TCGA-GM-A2DN-01 1 201030401 201030401 C T CACNA1S Silent p.K1083K 0.28 TCGA-GM-A2DN-01 20 16410515 16410515 T G KIF16B Missense_Mutation p.H472P 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-GM-A2DN-01 22 31851272 31851272 G A EIF4ENIF1 Nonsense_Mutation p.Q377* 0.22 TCGA-GM-A2DN-01 4 156629403 156629403 A G GUCY1A3 Silent p.R111R 0.19 TCGA-GM-A2DN-01 6 26240799 26240799 G C HIST1H4F Missense_Mutation p.G49A 0.09 tolerated(0.1) benign(0.05) TCGA-GM-A2DN-01 6 55441929 55441929 C T HMGCLL1 Missense_Mutation p.D49N 0.15 tolerated_low_confidence(0.5) benign(0) TCGA-GM-A2DN-01 7 47409188 47409188 C A TNS3 Missense_Mutation p.S352I 0.36 deleterious(0) probably_damaging(0.943) TCGA-GM-A2DN-01 8 48625271 48625271 G A SPIDR Silent p.V675V 0.09 TCGA-GM-A2DN-01 X 10535215 10535215 C T MID1 Missense_Mutation p.D125N 0.16 deleterious(0.03) benign(0.09) TCGA-GM-A2DN-01 X 18911725 18911725 T C PHKA2 Missense_Mutation p.I1196V 0.07 tolerated(0.2) benign(0.003) TCGA-GM-A2DO-01 10 102799295 102799295 G A SFXN3 Missense_Mutation p.E311K 0.07 tolerated(1) benign(0.002) TCGA-GM-A2DO-01 10 120877150 120877150 G A FAM45A Missense_Mutation p.R151Q 0.07 tolerated(0.25) benign(0.063) TCGA-GM-A2DO-01 10 125528075 125528075 G C CPXM2 Silent p.L422L 0.10 TCGA-GM-A2DO-01 10 13705478 13705478 G A FRMD4A Silent p.L545L 0.16 TCGA-GM-A2DO-01 10 23326240 23326240 C A ARMC3 Silent p.R817R 0.10 TCGA-GM-A2DO-01 10 26851337 26851337 G A APBB1IP Silent p.Q484Q 0.12 TCGA-GM-A2DO-01 10 70136823 70136823 G C RUFY2 Intron 0.08 TCGA-GM-A2DO-01 10 8100449 8100449 G A GATA3 Silent p.L141L 0.12 TCGA-GM-A2DO-01 11 55136013 55136013 C T OR4A15 Silent p.T218T 0.22 TCGA-GM-A2DO-01 11 65744186 65744186 G A SART1 Silent p.E602E 0.10 TCGA-GM-A2DO-01 11 67789323 67789323 G A ALDH3B1 Silent p.E309E 0.08 TCGA-GM-A2DO-01 11 78433790 78433790 C T TENM4 Silent p.G1241G 0.08 TCGA-GM-A2DO-01 11 8715634 8715634 G C ST5 3'UTR 0.11 TCGA-GM-A2DO-01 12 103288580 103288580 G A PAH Silent p.I95I 0.09 TCGA-GM-A2DO-01 12 130834421 130834421 G C PIWIL1 Missense_Mutation p.R318T 0.12 deleterious(0) probably_damaging(1) TCGA-GM-A2DO-01 12 275032 275032 G A IQSEC3 Missense_Mutation p.E983K 0.14 deleterious(0.01) possibly_damaging(0.78) TCGA-GM-A2DO-01 12 30881748 30881748 G C CAPRIN2 Nonsense_Mutation p.S539* 0.09 TCGA-GM-A2DO-01 12 49523063 49523063 C G TUBA1B Missense_Mutation p.E113Q 0.08 deleterious_low_confidence(0.04) probably_damaging(0.966) TCGA-GM-A2DO-01 12 53451451 53451451 G C TENC1 Missense_Mutation p.E326Q 0.15 tolerated(0.39) possibly_damaging(0.724) TCGA-GM-A2DO-01 12 53679959 53679959 G A ESPL1 Missense_Mutation p.D1147N 0.07 tolerated(0.49) benign(0.006) TCGA-GM-A2DO-01 12 56575305 56575305 G A SMARCC2 Missense_Mutation p.S306L 0.13 deleterious(0.03) benign(0.307) TCGA-GM-A2DO-01 12 62798108 62798108 G C USP15 Missense_Mutation p.D967H 0.08 deleterious(0.03) benign(0.02) TCGA-GM-A2DO-01 12 95905757 95905757 G A METAP2 Missense_Mutation p.E351K 0.09 deleterious(0.01) benign(0.401) TCGA-GM-A2DO-01 13 23910500 23910500 G A SACS Silent p.A2505A 0.13 TCGA-GM-A2DO-01 13 77667317 77667317 C T MYCBP2 Missense_Mutation p.M3412I 0.13 possibly_damaging(0.878) TCGA-GM-A2DO-01 13 79911262 79911262 C G RBM26 Missense_Mutation p.R876T 0.09 deleterious(0) possibly_damaging(0.765) TCGA-GM-A2DO-01 14 102466709 102466709 A G DYNC1H1 Silent p.Q1349Q 0.08 TCGA-GM-A2DO-01 14 24551994 24551994 C G NRL Missense_Mutation p.E22Q 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-GM-A2DO-01 14 53237957 53237957 C G STYX 3'UTR 0.40 TCGA-GM-A2DO-01 14 57714415 57714415 C T EXOC5 Missense_Mutation p.D15N 0.10 tolerated(0.12) possibly_damaging(0.696) TCGA-GM-A2DO-01 14 58471475 58471475 G A C14orf37 Silent p.D768D 0.13 TCGA-GM-A2DO-01 14 68249894 68249894 C T ZFYVE26 Silent p.P1325P 0.10 TCGA-GM-A2DO-01 14 75515438 75515438 T G MLH3 Silent p.V307V 0.10 TCGA-GM-A2DO-01 15 40259877 40259877 C T EIF2AK4 Silent p.L450L 0.07 TCGA-GM-A2DO-01 15 42154774 42154774 C T SPTBN5 Missense_Mutation p.E2450K 0.11 benign(0.047) TCGA-GM-A2DO-01 15 42691824 42691824 C T CAPN3 Missense_Mutation p.S443F 0.08 deleterious(0) benign(0.443) TCGA-GM-A2DO-01 15 44925744 44925744 G C SPG11 Missense_Mutation p.S565C 0.14 deleterious(0.01) benign(0.22) TCGA-GM-A2DO-01 15 45433515 45433515 G C DUOX1 Missense_Mutation p.E531Q 0.14 tolerated(0.1) benign(0.091) TCGA-GM-A2DO-01 15 55919234 55919234 G A PRTG Missense_Mutation p.L967F 0.08 tolerated(0.36) benign(0.061) TCGA-GM-A2DO-01 15 75762184 75762184 A C PTPN9 Missense_Mutation p.C506G 0.14 tolerated(0.14) benign(0.01) TCGA-GM-A2DO-01 15 89836012 89836012 G A FANCI Missense_Mutation p.E696K 0.14 tolerated(0.31) benign(0.071) TCGA-GM-A2DO-01 15 90454010 90454010 G A C15orf38-AP3S2 Missense_Mutation p.S45F 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GM-A2DO-01 15 99671148 99671148 C G SYNM Missense_Mutation p.I860M 0.09 deleterious(0) probably_damaging(0.997) TCGA-GM-A2DO-01 16 1292333 1292333 C T TPSAB1 3'UTR 0.11 TCGA-GM-A2DO-01 16 15931974 15931974 C G MYH11 Missense_Mutation p.E46Q 0.10 possibly_damaging(0.553) TCGA-GM-A2DO-01 16 1841614 1841614 G A IGFALS Nonsense_Mutation p.R307* 0.14 TCGA-GM-A2DO-01 16 19873218 19873218 G C GPRC5B Missense_Mutation p.P370A 0.07 tolerated(0.23) probably_damaging(0.997) TCGA-GM-A2DO-01 16 2314176 2314176 C A RNPS1 Splice_Site p.X76_splice 0.09 TCGA-GM-A2DO-01 16 29916232 29916232 G T ASPHD1 Nonsense_Mutation p.E337* 0.09 TCGA-GM-A2DO-01 16 31123511 31123511 C A BCKDK Silent p.S388S 0.18 TCGA-GM-A2DO-01 16 3349173 3349173 C T TIGD7 Missense_Mutation p.R481K 0.07 tolerated(0.75) benign(0.002) TCGA-GM-A2DO-01 16 421948 421948 G A TMEM8A 3'UTR 0.09 TCGA-GM-A2DO-01 16 422647 422647 G A TMEM8A Silent p.P661P 0.09 TCGA-GM-A2DO-01 16 4987026 4987026 C T PPL Silent p.K7K 0.21 TCGA-GM-A2DO-01 16 68845616 68845616 G A CDH1 Missense_Mutation p.D288N 0.12 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DO-01 16 81399037 81399037 G A GAN Missense_Mutation p.E486K 0.10 tolerated(0.15) benign(0.041) TCGA-GM-A2DO-01 16 88498222 88498222 G A ZNF469 Silent p.P1420P 0.19 TCGA-GM-A2DO-01 16 88802600 88802600 C G PIEZO1 Missense_Mutation p.G505R 0.14 deleterious(0) probably_damaging(1) TCGA-GM-A2DO-01 17 10358364 10358364 G C MYH4 Missense_Mutation p.L777V 0.13 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DO-01 17 11696922 11696922 G A DNAH9 Missense_Mutation p.E2722K 0.08 benign(0.022) TCGA-GM-A2DO-01 17 1561836 1561836 C G PRPF8 Missense_Mutation p.R1787T 0.15 deleterious(0) probably_damaging(0.998) TCGA-GM-A2DO-01 17 15619791 15619791 C G ZNF286A Silent p.L251L 0.12 TCGA-GM-A2DO-01 17 27086726 27086726 G A FAM222B Missense_Mutation p.S84L 0.13 deleterious(0) benign(0.115) TCGA-GM-A2DO-01 17 33689936 33689936 G A SLFN11 Silent p.L297L 0.09 TCGA-GM-A2DO-01 17 39550277 39550277 G A KRT31 Silent p.F414F 0.12 TCGA-GM-A2DO-01 17 42850750 42850750 G A ADAM11 Missense_Mutation p.R316Q 0.08 deleterious(0.02) possibly_damaging(0.74) TCGA-GM-A2DO-01 17 54403701 54403701 C G ANKFN1 Missense_Mutation p.S61W 0.22 deleterious_low_confidence(0.01) benign(0.001) TCGA-GM-A2DO-01 17 66366636 66366636 C A ARSG Missense_Mutation p.P318H 0.09 deleterious(0.02) possibly_damaging(0.75) TCGA-GM-A2DO-01 17 71232151 71232151 C T C17orf80 Missense_Mutation p.S177L 0.14 tolerated(0.22) probably_damaging(0.962) TCGA-GM-A2DO-01 17 72840607 72840607 G A GRIN2C Silent p.I797I 0.14 TCGA-GM-A2DO-01 17 74470500 74470500 C G RHBDF2 Missense_Mutation p.Q502H 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-GM-A2DO-01 17 77111642 77111642 C G RBFOX3 Missense_Mutation p.Q52H 0.10 tolerated_low_confidence(0.1) benign(0.003) TCGA-GM-A2DO-01 17 78263574 78263574 T G RNF213 Silent p.A350A 0.19 TCGA-GM-A2DO-01 17 8015494 8015494 C T ALOXE3 Missense_Mutation p.R366Q 0.08 deleterious(0.04) possibly_damaging(0.587) TCGA-GM-A2DO-01 17 80445853 80445853 G A NARF Silent p.L397L 0.30 TCGA-GM-A2DO-01 18 13049027 13049027 G C CEP192 Missense_Mutation p.R746T 0.13 deleterious(0.03) benign(0.081) TCGA-GM-A2DO-01 18 39576617 39576617 C T PIK3C3 Missense_Mutation p.P303S 0.15 tolerated(0.14) possibly_damaging(0.463) TCGA-GM-A2DO-01 18 47563360 47563360 G C MYO5B Missense_Mutation p.I105M 0.09 deleterious(0) probably_damaging(1) TCGA-GM-A2DO-01 18 5290905 5290905 C T ZBTB14 Silent p.A434A 0.10 TCGA-GM-A2DO-01 18 9211737 9211737 G A ANKRD12 Missense_Mutation p.E203K 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-GM-A2DO-01 19 10745432 10745432 G T SLC44A2 Missense_Mutation p.G275V 0.10 deleterious(0) possibly_damaging(0.566) TCGA-GM-A2DO-01 19 14211681 14211681 C T PRKACA Missense_Mutation p.G126S 0.10 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DO-01 19 16548608 16548608 C T EPS15L1 Silent p.L94L 0.16 TCGA-GM-A2DO-01 19 33587206 33587206 C G GPATCH1 Missense_Mutation p.L236V 0.13 deleterious(0) probably_damaging(0.991) TCGA-GM-A2DO-01 19 3574548 3574548 C T HMG20B Silent p.G105G 0.25 TCGA-GM-A2DO-01 19 36584985 36584985 G A WDR62 Missense_Mutation p.E796K 0.16 tolerated(0.18) probably_damaging(0.986) TCGA-GM-A2DO-01 19 367163 367163 G C THEG Nonsense_Mutation p.S272* 0.07 TCGA-GM-A2DO-01 19 42223850 42223850 G A CEACAM5 Silent p.A498A 0.11 TCGA-GM-A2DO-01 19 4525794 4525794 G A PLIN5 Nonsense_Mutation p.Q191* 0.13 TCGA-GM-A2DO-01 19 45911417 45911417 C T CD3EAP Missense_Mutation p.S64F 0.14 deleterious(0.04) probably_damaging(0.926) TCGA-GM-A2DO-01 19 48385371 48385371 C T SULT2A1 Missense_Mutation p.E148K 0.12 tolerated(0.07) benign(0.106) TCGA-GM-A2DO-01 19 48598758 48598758 G A PLA2G4C Silent p.V234V 0.07 TCGA-GM-A2DO-01 19 48640791 48640791 G A LIG1 Silent p.L414L 0.18 TCGA-GM-A2DO-01 19 7509313 7509313 G A ARHGEF18 Silent p.Q340Q 0.13 TCGA-GM-A2DO-01 19 7761939 7761939 C T FCER2 Silent p.L113L 0.11 TCGA-GM-A2DO-01 19 9083895 9083895 G A MUC16 Silent p.F2640F 0.13 TCGA-GM-A2DO-01 19 9084175 9084175 G C MUC16 Nonsense_Mutation p.S2547* 0.06 TCGA-GM-A2DO-01 19 9721637 9721637 C G ZNF561 Missense_Mutation p.V234L 0.10 tolerated(0.22) benign(0.006) TCGA-GM-A2DO-01 1 111772433 111772433 G A CHI3L2 Intron 0.10 TCGA-GM-A2DO-01 1 145416537 145416537 C T HFE2 Silent p.L294L 0.08 TCGA-GM-A2DO-01 1 171070948 171070948 C G FMO3 Intron 0.20 TCGA-GM-A2DO-01 1 17296362 17296362 G A CROCC Missense_Mutation p.R1795Q 0.06 benign(0.417) TCGA-GM-A2DO-01 1 175066685 175066685 G C TNN Missense_Mutation p.R574T 0.07 deleterious(0.04) benign(0.013) TCGA-GM-A2DO-01 1 200868717 200868717 C T C1orf106 Missense_Mutation p.R58W 0.10 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DO-01 1 222827736 222827736 G A MIA3 Silent p.Q1461Q 0.11 TCGA-GM-A2DO-01 1 240656380 240656380 G C GREM2 Silent p.L132L 0.11 TCGA-GM-A2DO-01 1 243449672 243449672 G A SDCCAG8 Silent p.L173L 0.08 TCGA-GM-A2DO-01 1 32495999 32495999 G A KHDRBS1 Silent p.L161L 0.11 TCGA-GM-A2DO-01 1 36202188 36202188 G C CLSPN Missense_Mutation p.S1310C 0.14 deleterious(0.03) possibly_damaging(0.769) TCGA-GM-A2DO-01 1 44365326 44365326 C A ST3GAL3 Missense_Mutation p.S293Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DO-01 1 50610817 50610817 C T ELAVL4 Silent p.F83F 0.08 TCGA-GM-A2DO-01 1 52306008 52306008 C T NRD1 Missense_Mutation p.D174N 0.08 tolerated_low_confidence(0.3) possibly_damaging(0.539) TCGA-GM-A2DO-01 20 2637520 2637520 C T NOP56 Silent p.V420V 0.07 TCGA-GM-A2DO-01 20 31760835 31760835 G A BPIFA2 Silent p.L85L 0.11 TCGA-GM-A2DO-01 20 35693877 35693877 C G RBL1 Splice_Site p.X283_splice 0.13 TCGA-GM-A2DO-01 20 40127968 40127968 A C CHD6 Missense_Mutation p.I294M 0.11 deleterious(0) probably_damaging(0.992) TCGA-GM-A2DO-01 20 52789903 52789903 C T CYP24A1 Silent p.Q72Q 0.08 TCGA-GM-A2DO-01 20 57246341 57246341 G A STX16 Missense_Mutation p.M260I 0.09 tolerated(0.11) benign(0.145) TCGA-GM-A2DO-01 20 57829085 57829085 C G ZNF831 Missense_Mutation p.L1441V 0.12 deleterious(0.02) possibly_damaging(0.717) TCGA-GM-A2DO-01 20 60733751 60733751 G A SS18L1 Silent p.L31L 0.20 TCGA-GM-A2DO-01 21 19653444 19653444 C T TMPRSS15 Missense_Mutation p.E861K 0.07 deleterious(0.03) benign(0.016) TCGA-GM-A2DO-01 21 37431122 37431122 G C SETD4 Nonsense_Mutation p.S22* 0.09 TCGA-GM-A2DO-01 22 22989698 22989698 G A GGTLC2 Missense_Mutation p.E150K 0.10 tolerated(0.21) possibly_damaging(0.596) TCGA-GM-A2DO-01 22 36715654 36715654 G A MYH9 Missense_Mutation p.L347F 0.08 probably_damaging(0.975) TCGA-GM-A2DO-01 22 51177892 51177892 G A ACR Missense_Mutation p.V91I 0.16 tolerated(0.2) benign(0.109) TCGA-GM-A2DO-01 2 124999823 124999823 C G CNTNAP5 Silent p.L78L 0.08 TCGA-GM-A2DO-01 2 136605718 136605718 T A MCM6 Missense_Mutation p.N653I 0.13 deleterious(0.02) probably_damaging(0.973) TCGA-GM-A2DO-01 2 152474912 152474912 C G NEB Missense_Mutation p.K3651N 0.21 probably_damaging(1) TCGA-GM-A2DO-01 2 160289855 160289855 A G BAZ2B Missense_Mutation p.F438S 0.10 benign(0.307) TCGA-GM-A2DO-01 2 163082008 163082008 C G FAP Missense_Mutation p.L90F 0.08 deleterious(0.01) possibly_damaging(0.86) TCGA-GM-A2DO-01 2 179559358 179559358 G A TTN Missense_Mutation p.T10465I 0.07 TCGA-GM-A2DO-01 2 197010664 197010664 G A STK17B Nonsense_Mutation p.Q151* 0.20 TCGA-GM-A2DO-01 2 203624039 203624039 G C FAM117B Missense_Mutation p.E472Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-GM-A2DO-01 2 207172666 207172666 G A ZDBF2 Silent p.V1138V 0.15 TCGA-GM-A2DO-01 2 231177417 231177417 G A SP140 3'UTR 0.11 TCGA-GM-A2DO-01 2 47389517 47389517 C G CALM2 Missense_Mutation p.D65H 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-GM-A2DO-01 2 70529172 70529172 C T FAM136A 5'UTR 0.17 TCGA-GM-A2DO-01 2 84921395 84921395 G A DNAH6 Missense_Mutation p.E2439K 0.13 deleterious(0.02) benign(0.411) TCGA-GM-A2DO-01 2 86315698 86315698 C G POLR1A Missense_Mutation p.E241Q 0.11 tolerated(0.17) benign(0.027) TCGA-GM-A2DO-01 3 122259511 122259511 C A PARP9 Missense_Mutation p.D560Y 0.09 deleterious(0.03) benign(0.287) TCGA-GM-A2DO-01 3 12626141 12626141 C G RAF1 Missense_Mutation p.E607Q 0.07 deleterious(0.02) possibly_damaging(0.638) TCGA-GM-A2DO-01 3 133654634 133654634 C T SLCO2A1 Missense_Mutation p.D600N 0.11 tolerated(0.29) benign(0.032) TCGA-GM-A2DO-01 3 156763253 156763253 C T LEKR1 Missense_Mutation p.S598L 0.12 deleterious(0) possibly_damaging(0.504) TCGA-GM-A2DO-01 3 183881455 183881455 G A DVL3 Missense_Mutation p.E58K 0.07 deleterious(0) possibly_damaging(0.874) TCGA-GM-A2DO-01 3 185232199 185232199 G C LIPH Missense_Mutation p.H365D 0.08 tolerated(0.09) possibly_damaging(0.558) TCGA-GM-A2DO-01 3 33442461 33442461 G A UBP1 Missense_Mutation p.S360F 0.14 tolerated(0.34) benign(0.057) TCGA-GM-A2DO-01 3 44285462 44285462 G C TOPAZ1 Missense_Mutation p.M488I 0.07 deleterious(0.04) benign(0.093) TCGA-GM-A2DO-01 3 47890739 47890739 C T DHX30 Missense_Mutation p.S996L 0.12 deleterious(0.02) possibly_damaging(0.487) TCGA-GM-A2DO-01 3 49412905 49412905 C G RHOA Missense_Mutation p.E40Q 0.10 deleterious(0.04) possibly_damaging(0.534) TCGA-GM-A2DO-01 3 50005138 50005138 G A RBM6 Missense_Mutation p.D94N 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.645) TCGA-GM-A2DO-01 3 53916161 53916161 C T ACTR8 5'UTR 0.32 TCGA-GM-A2DO-01 4 106180924 106180924 G C TET2 Missense_Mutation p.E1318Q 0.10 deleterious(0.03) possibly_damaging(0.859) TCGA-GM-A2DO-01 4 106639122 106639122 G A GSTCD Missense_Mutation p.E118K 0.12 tolerated(0.21) benign(0.171) TCGA-GM-A2DO-01 4 113348812 113348812 A G ALPK1 Silent p.Q262Q 0.10 TCGA-GM-A2DO-01 4 115585277 115585277 C T UGT8 Nonsense_Mutation p.Q317* 0.10 TCGA-GM-A2DO-01 4 146770558 146770558 C G ZNF827 Missense_Mutation p.E713Q 0.08 tolerated(0.06) possibly_damaging(0.84) TCGA-GM-A2DO-01 4 26322490 26322490 G A RBPJ Intron 0.12 TCGA-GM-A2DO-01 4 40104429 40104429 G A N4BP2 Missense_Mutation p.E322K 0.06 tolerated(0.08) probably_damaging(0.998) TCGA-GM-A2DO-01 4 87770167 87770167 G A SLC10A6 Silent p.F34F 0.10 TCGA-GM-A2DO-01 5 140220923 140220923 G A PCDHA8 Missense_Mutation p.R6Q 0.14 tolerated_low_confidence(0.13) benign(0.006) TCGA-GM-A2DO-01 5 140222831 140222831 C G PCDHA8 Missense_Mutation p.S642C 0.13 deleterious_low_confidence(0) benign(0.154) TCGA-GM-A2DO-01 5 140752311 140752311 G A PCDHGB3 Missense_Mutation p.E784K 0.12 tolerated(0.27) benign(0.013) TCGA-GM-A2DO-01 5 141336485 141336485 T A PCDH12 Missense_Mutation p.D311V 0.29 deleterious(0) probably_damaging(1) TCGA-GM-A2DO-01 5 170235610 170235610 A G GABRP Missense_Mutation p.Y229C 0.08 deleterious(0) probably_damaging(0.999) TCGA-GM-A2DO-01 5 175530237 175530237 C G FAM153B Missense_Mutation p.I147M 0.09 tolerated_low_confidence(0.3) benign(0.014) TCGA-GM-A2DO-01 5 38258821 38258821 G A EGFLAM 5'UTR 0.12 TCGA-GM-A2DO-01 5 70930839 70930839 G A MCCC2 Silent p.V291V 0.12 TCGA-GM-A2DO-01 5 72798840 72798840 G C BTF3 Missense_Mutation p.E139Q 0.15 tolerated(0.2) possibly_damaging(0.718) TCGA-GM-A2DO-01 5 78350150 78350150 C G DMGDH Missense_Mutation p.G133R 0.07 deleterious(0) probably_damaging(1) TCGA-GM-A2DO-01 5 9629959 9629959 G C TAS2R1 Missense_Mutation p.I62M 0.25 tolerated(0.1) possibly_damaging(0.643) TCGA-GM-A2DO-01 6 137476183 137476183 C A IL22RA2 Nonsense_Mutation p.E123* 0.09 TCGA-GM-A2DO-01 6 146125562 146125562 C T FBXO30 Silent p.Q660Q 0.09 TCGA-GM-A2DO-01 6 26251922 26251922 C A HIST1H2BH Missense_Mutation p.S15Y 0.09 tolerated_low_confidence(0.07) benign(0.075) TCGA-GM-A2DO-01 6 29142120 29142120 G C OR2J2 Missense_Mutation p.Q236H 0.17 tolerated(0.1) possibly_damaging(0.834) TCGA-GM-A2DO-01 6 32847043 32847043 G C PPP1R2P1 RNA 0.09 TCGA-GM-A2DO-01 6 42797646 42797646 C T GLTSCR1L Silent p.F525F 0.11 TCGA-GM-A2DO-01 6 70589441 70589441 C T COL19A1 5'UTR 0.09 TCGA-GM-A2DO-01 6 76566933 76566933 C T MYO6 Missense_Mutation p.S448L 0.12 deleterious(0) unknown(0) TCGA-GM-A2DO-01 6 82923947 82923947 C T IBTK Missense_Mutation p.S734N 0.12 tolerated(0.14) benign(0.25) TCGA-GM-A2DO-01 7 100484562 100484562 C T SRRT Silent p.N598N 0.06 TCGA-GM-A2DO-01 7 115890508 115890508 G A TES Silent p.G220G 0.17 TCGA-GM-A2DO-01 7 150814498 150814498 T G AGAP3 Missense_Mutation p.S173R 0.10 deleterious(0) possibly_damaging(0.797) TCGA-GM-A2DO-01 7 158449374 158449374 C G NCAPG2 Missense_Mutation p.R695T 0.08 deleterious(0) probably_damaging(0.99) TCGA-GM-A2DO-01 7 33066431 33066431 G A NT5C3A Nonsense_Mutation p.Q84* 0.11 TCGA-GM-A2DO-01 7 42065886 42065886 G A GLI3 Missense_Mutation p.P385L 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-GM-A2DO-01 7 43843326 43843326 C A BLVRA Missense_Mutation p.S171Y 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-GM-A2DO-01 7 5347820 5347820 C T TNRC18 Missense_Mutation p.E2942K 0.08 unknown(0) TCGA-GM-A2DO-01 7 5531041 5531041 G A FBXL18 Silent p.F607F 0.10 TCGA-GM-A2DO-01 7 56022709 56022709 G C MRPS17 Silent p.V77V 0.08 TCGA-GM-A2DO-01 7 87035650 87035650 G A ABCB4 Missense_Mutation p.A1154V 0.11 tolerated(0.13) possibly_damaging(0.665) TCGA-GM-A2DO-01 7 92134147 92134147 G C PEX1 Missense_Mutation p.S657C 0.07 deleterious(0) benign(0.423) TCGA-GM-A2DO-01 7 99719923 99719923 C G CNPY4 Missense_Mutation p.R54G 0.09 deleterious(0) possibly_damaging(0.549) TCGA-GM-A2DO-01 8 121551151 121551151 G A SNTB1 Missense_Mutation p.S528L 0.06 deleterious(0) probably_damaging(0.988) TCGA-GM-A2DO-01 8 23002572 23002572 C G TNFRSF10D Missense_Mutation p.R256T 0.12 tolerated(0.08) possibly_damaging(0.676) TCGA-GM-A2DO-01 8 38386030 38386030 C T C8orf86 Silent p.K42K 0.04 TCGA-GM-A2DO-01 8 48586495 48586495 C G SPIDR Silent p.T559T 0.18 TCGA-GM-A2DO-01 8 56711671 56711671 G T TGS1 Nonsense_Mutation p.E581* 0.10 TCGA-GM-A2DO-01 8 6668924 6668924 C T XKR5 RNA 0.21 TCGA-GM-A2DO-01 8 87454969 87454969 C G WWP1 Missense_Mutation p.L654V 0.12 deleterious(0) probably_damaging(0.996) TCGA-GM-A2DO-01 8 99006790 99006790 G C MATN2 Silent p.L388L 0.17 TCGA-GM-A2DO-01 9 103348411 103348411 C G MURC Missense_Mutation p.S258C 0.15 deleterious(0) probably_damaging(0.971) TCGA-GM-A2DO-01 9 107380084 107380084 G A OR13C9 Silent p.I134I 0.13 TCGA-GM-A2DO-01 9 117099426 117099426 C T AKNA Missense_Mutation p.E1410K 0.09 tolerated(0.52) benign(0.041) TCGA-GM-A2DO-01 9 128117036 128117036 G C GAPVD1 Missense_Mutation p.E1252Q 0.09 tolerated(0.11) benign(0.336) TCGA-GM-A2DO-01 9 21217072 21217072 G A IFNA16 Missense_Mutation p.S78F 0.23 tolerated(0.1) benign(0.022) TCGA-GM-A2DO-01 9 33676598 33676598 C G PTENP1 RNA 0.08 TCGA-GM-A2DO-01 9 72746489 72746489 G A MAMDC2 Missense_Mutation p.D319N 0.10 deleterious(0) probably_damaging(1) TCGA-GM-A2DO-01 9 74974342 74974342 G A ZFAND5 Missense_Mutation p.S120L 0.06 tolerated(0.37) benign(0.001) TCGA-GM-A2DO-01 9 96289470 96289470 G A FAM120A Silent p.K484K 0.08 TCGA-GM-A2DO-01 X 103045559 103045559 G A PLP1 3'UTR 0.10 TCGA-GM-A2DO-01 X 109310622 109310622 C T TMEM164 Silent p.F146F 0.09 TCGA-GM-A2DO-01 X 11136674 11136674 G A HCCS Missense_Mutation p.R152K 0.16 tolerated(1) benign(0.004) TCGA-GM-A2DO-01 X 128782606 128782606 G A APLN Silent p.F77F 0.22 TCGA-GM-A2DO-01 X 129629264 129629264 G A RP1-274L7.1 Intron 0.07 TCGA-GM-A2DO-01 X 152994737 152994737 C G ABCD1 Missense_Mutation p.I317M 0.15 tolerated(1) benign(0.007) TCGA-GM-A2DO-01 X 19443663 19443663 C T MAP3K15 Silent p.L475L 0.08 TCGA-GM-A2DO-01 X 57619607 57619607 C T ZXDB Nonsense_Mutation p.Q376* 0.11 TCGA-GM-A2DO-01 X 69623811 69623811 G A KIF4A Missense_Mutation p.R906Q 0.15 tolerated(0.31) benign(0.01) TCGA-GM-A2DO-01 X 82763349 82763349 C T POU3F4 Missense_Mutation p.S6L 0.14 deleterious(0) possibly_damaging(0.877) TCGA-GM-A2DO-01 X 86890654 86890654 C G KLHL4 Missense_Mutation p.P602A 0.10 deleterious(0.05) benign(0.011) TCGA-GM-A3NW-01 10 1176229 1176229 C T WDR37 3'UTR 0.25 TCGA-GM-A3NW-01 10 15879305 15879305 G C FAM188A Missense_Mutation p.F158L 0.20 tolerated(0.3) benign(0.005) TCGA-GM-A3NW-01 10 45936008 45936008 G A ALOX5 Missense_Mutation p.R371Q 0.13 tolerated(0.21) possibly_damaging(0.669) TCGA-GM-A3NW-01 11 10794775 10794775 G A CTR9 Silent p.E894E 0.18 TCGA-GM-A3NW-01 11 55340443 55340443 C G OR4C16 Silent p.L280L 0.32 TCGA-GM-A3NW-01 11 62299855 62299855 T C AHNAK Silent p.G678G 0.48 TCGA-GM-A3NW-01 11 65351789 65351789 C T EHBP1L1 Silent p.V1057V 0.40 TCGA-GM-A3NW-01 11 6867630 6867630 C G OR10A5 Missense_Mutation p.F239L 0.20 deleterious(0.03) possibly_damaging(0.787) TCGA-GM-A3NW-01 11 78285605 78285605 C T NARS2 5'UTR 0.09 TCGA-GM-A3NW-01 12 120428000 120428000 C G CCDC64 Missense_Mutation p.L110V 0.16 deleterious(0.01) benign(0.222) TCGA-GM-A3NW-01 12 133417311 133417311 C G CHFR 3'Flank 0.18 TCGA-GM-A3NW-01 12 29920982 29920982 T G TMTC1 Missense_Mutation p.N110T 0.25 tolerated(0.56) benign(0.002) TCGA-GM-A3NW-01 12 54520126 54520126 C G RP11-834C11.4 RNA 0.18 TCGA-GM-A3NW-01 13 96237020 96237020 C T DZIP1 Missense_Mutation p.A832T 0.12 tolerated(0.32) benign(0.012) TCGA-GM-A3NW-01 14 103566715 103566715 G A EXOC3L4 Silent p.L53L 0.22 TCGA-GM-A3NW-01 14 105258971 105258971 C G AKT1 Missense_Mutation p.V4L 0.25 tolerated(0.18) benign(0.006) TCGA-GM-A3NW-01 14 106471404 106471404 C G IGHV1-3 Missense_Mutation p.E65Q 0.14 tolerated(0.06) possibly_damaging(0.463) TCGA-GM-A3NW-01 14 73720540 73720540 G A PAPLN Silent p.S364S 0.28 TCGA-GM-A3NW-01 14 74184283 74184283 G C ELMSAN1 3'UTR 0.24 TCGA-GM-A3NW-01 14 74440662 74440662 G C ENTPD5 Missense_Mutation p.F268L 0.21 tolerated(1) probably_damaging(0.94) TCGA-GM-A3NW-01 15 34820136 34820136 G A GOLGA8B Silent p.A532A 0.15 TCGA-GM-A3NW-01 15 54003115 54003115 C G WDR72 Missense_Mutation p.R298T 0.27 tolerated(0.28) benign(0.002) TCGA-GM-A3NW-01 15 65680857 65680857 C T IGDCC4 Silent p.A925A 0.26 TCGA-GM-A3NW-01 16 22359004 22359004 C T CDR2 Missense_Mutation p.R216Q 0.39 deleterious(0.01) probably_damaging(0.966) TCGA-GM-A3NW-01 16 2288404 2288404 C G DNASE1L2 Silent p.L295L 0.29 TCGA-GM-A3NW-01 16 56228093 56228093 G A GNAO1 Intron 0.21 TCGA-GM-A3NW-01 17 16701809 16701809 C A CCDC144A 3'UTR 0.13 TCGA-GM-A3NW-01 17 33521089 33521089 G A SLC35G3 Missense_Mutation p.H80Y 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-GM-A3NW-01 17 34956767 34956767 G C DHRS11 3'UTR 0.20 TCGA-GM-A3NW-01 17 39092673 39092673 A T KRT23 Silent p.S61S 0.38 TCGA-GM-A3NW-01 17 39680234 39680234 C G KRT19 Missense_Mutation p.D322H 0.15 deleterious(0) possibly_damaging(0.571) TCGA-GM-A3NW-01 17 40848083 40848083 C T CNTNAP1 Silent p.Y1129Y 0.40 TCGA-GM-A3NW-01 17 4441244 4441244 G A SPNS2 3'UTR 0.24 TCGA-GM-A3NW-01 17 6930108 6930108 G T BCL6B Missense_Mutation p.G380V 0.26 deleterious(0) probably_damaging(1) TCGA-GM-A3NW-01 17 7094588 7094588 G A DLG4 Missense_Mutation p.S732L 0.12 deleterious(0) benign(0.241) TCGA-GM-A3NW-01 17 7496081 7496081 C T FXR2 Missense_Mutation p.D554N 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GM-A3NW-01 18 53128339 53128339 C G TCF4 Missense_Mutation p.G174A 0.41 tolerated(0.2) benign(0.017) TCGA-GM-A3NW-01 18 59770085 59770085 G A PIGN Missense_Mutation p.S637F 0.25 tolerated(0.79) benign(0.033) TCGA-GM-A3NW-01 18 6241437 6241437 C G L3MBTL4 Missense_Mutation p.D158H 0.18 deleterious(0.02) probably_damaging(1) TCGA-GM-A3NW-01 19 1084313 1084313 C T HMHA1 Missense_Mutation p.P1027L 0.20 tolerated_low_confidence(0.05) benign(0.003) TCGA-GM-A3NW-01 19 15636269 15636269 G A CYP4F22 Missense_Mutation p.R41Q 0.07 tolerated(0.23) benign(0) TCGA-GM-A3NW-01 19 19656535 19656535 G A CILP2 Missense_Mutation p.V1061I 0.14 tolerated(1) benign(0.004) TCGA-GM-A3NW-01 19 2643663 2643663 C T GNG7 Intron 0.29 TCGA-GM-A3NW-01 19 41285991 41285991 C T RAB4B Silent p.F28F 0.13 TCGA-GM-A3NW-01 19 55019380 55019380 C T LAIR2 Silent p.F115F 0.23 TCGA-GM-A3NW-01 19 5604869 5604869 C T SAFB2 Missense_Mutation p.D459N 0.27 deleterious(0) possibly_damaging(0.484) TCGA-GM-A3NW-01 19 7601418 7601418 C T PNPLA6 Silent p.L142L 0.38 TCGA-GM-A3NW-01 19 9091148 9091148 G C MUC16 Missense_Mutation p.P223A 0.26 unknown(0) TCGA-GM-A3NW-01 1 151011415 151011415 G C BNIPL Missense_Mutation p.D116H 0.25 deleterious(0) probably_damaging(0.92) TCGA-GM-A3NW-01 1 152279766 152279766 C T FLG Silent p.S2532S 0.09 TCGA-GM-A3NW-01 1 153965335 153965335 A T NUP210L Missense_Mutation p.H1881Q 0.13 tolerated(0.09) benign(0.045) TCGA-GM-A3NW-01 1 166888258 166888258 G C ILDR2 3'UTR 0.17 TCGA-GM-A3NW-01 1 186023106 186023106 C T HMCN1 Silent p.L2284L 0.11 TCGA-GM-A3NW-01 1 235872550 235872550 A C LYST Silent p.P3328P 0.37 TCGA-GM-A3NW-01 20 32250030 32250030 G A NECAB3 Intron 0.13 TCGA-GM-A3NW-01 21 11098713 11098713 G A BAGE2 RNA 0.13 TCGA-GM-A3NW-01 22 43287091 43287091 C G PACSIN2 Missense_Mutation p.M105I 0.16 tolerated(0.39) possibly_damaging(0.791) TCGA-GM-A3NW-01 2 238283227 238283227 G A COL6A3 Silent p.N1169N 0.23 TCGA-GM-A3NW-01 3 169482724 169482724 C T ACTRT3 3'Flank 0.26 TCGA-GM-A3NW-01 3 178921551 178921551 A C PIK3CA Missense_Mutation p.N345H 0.32 deleterious(0) probably_damaging(1) TCGA-GM-A3NW-01 3 188327005 188327005 G A LPP Silent p.K162K 0.16 TCGA-GM-A3NW-01 4 146055052 146055052 C G OTUD4 3'UTR 0.36 TCGA-GM-A3NW-01 4 1810172 1810172 C T FGFR3 3'UTR 0.23 TCGA-GM-A3NW-01 4 37651123 37651123 C A RELL1 Splice_Site p.X30_splice 0.35 TCGA-GM-A3NW-01 4 94137898 94137898 G A GRID2 Missense_Mutation p.D267N 0.12 deleterious(0.01) probably_damaging(0.971) TCGA-GM-A3NW-01 5 140712490 140712490 C T PCDHGA1 Missense_Mutation p.R747W 0.22 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-GM-A3NW-01 5 176008530 176008530 G A CDHR2 Missense_Mutation p.D669N 0.13 deleterious(0) probably_damaging(1) TCGA-GM-A3NW-01 5 180429703 180429703 G A BTNL3 Silent p.L235L 0.55 TCGA-GM-A3NW-01 5 43502579 43502579 C T C5orf34 Missense_Mutation p.M349I 0.13 tolerated(0.31) benign(0.002) TCGA-GM-A3NW-01 5 54763841 54763841 G C PPAP2A Missense_Mutation p.T117S 0.53 deleterious(0) probably_damaging(0.927) TCGA-GM-A3NW-01 5 56231261 56231261 C G MIER3 Missense_Mutation p.E197Q 0.17 deleterious(0.02) benign(0.376) TCGA-GM-A3NW-01 5 61699154 61699154 C G DIMT1 Silent p.G33G 0.12 TCGA-GM-A3NW-01 5 75896731 75896731 C T IQGAP2 Missense_Mutation p.S389F 0.12 deleterious(0.04) benign(0.14) TCGA-GM-A3NW-01 5 80363981 80363981 G A RASGRF2 Missense_Mutation p.E176K 0.50 tolerated(0.37) possibly_damaging(0.662) TCGA-GM-A3NW-01 5 96237327 96237327 G C ERAP2 Missense_Mutation p.E564Q 0.17 deleterious(0.01) benign(0.039) TCGA-GM-A3NW-01 6 151757629 151757629 G C RMND1 Missense_Mutation p.Q189E 0.14 tolerated(0.33) benign(0.194) TCGA-GM-A3NW-01 6 154771286 154771286 G A CNKSR3 Silent p.V53V 0.24 TCGA-GM-A3NW-01 6 16143354 16143354 C T MYLIP Missense_Mutation p.H190Y 0.35 tolerated(0.15) benign(0.04) TCGA-GM-A3NW-01 6 27806549 27806549 G A HIST1H2BN Missense_Mutation p.S37N 0.16 deleterious_low_confidence(0.04) benign(0.023) TCGA-GM-A3NW-01 6 30587369 30587369 G A MRPS18B Missense_Mutation p.E60K 0.17 tolerated(0.33) benign(0.021) TCGA-GM-A3NW-01 6 73112050 73112050 C T RIMS1 3'Flank 0.27 TCGA-GM-A3NW-01 6 74502425 74502425 G C CD109 Missense_Mutation p.M926I 0.11 deleterious(0) probably_damaging(0.997) TCGA-GM-A3NW-01 7 124481034 124481034 C G POT1 Missense_Mutation p.L454F 0.14 tolerated(0.45) probably_damaging(0.935) TCGA-GM-A3NW-01 7 1581950 1581950 C G MAFK 3'UTR 0.24 TCGA-GM-A3NW-01 7 64363752 64363752 G C ZNF273 Silent p.G19G 0.25 TCGA-GM-A3NW-01 8 121468841 121468843 AGA - MTBP In_Frame_Del p.E227del 0.47 TCGA-GM-A3NW-01 8 134250811 134250811 A T NDRG1 3'UTR 0.32 TCGA-GM-A3NW-01 8 26515645 26515645 G T DPYSL2 3'UTR 0.25 TCGA-GM-A3NW-01 8 82437317 82437317 G A FABP12 Silent p.Y129Y 0.28 TCGA-GM-A3NW-01 9 131600599 131600599 C T CCBL1 Silent p.L83L 0.12 TCGA-GM-A3NW-01 9 35077299 35077299 A G FANCG Missense_Mutation p.L203S 0.19 deleterious(0.01) probably_damaging(0.963) TCGA-GM-A3NW-01 9 39072966 39072967 CT - CNTNAP3 3'UTR 0.33 TCGA-GM-A3NW-01 9 84533024 84533024 G A SPATA31D5P RNA 0.19 TCGA-GM-A3NW-01 9 96214476 96214476 C A FAM120A Missense_Mutation p.F93L 0.29 tolerated(0.26) benign(0.001) TCGA-GM-A3NW-01 X 107408656 107408656 G C COL4A6 Nonsense_Mutation p.S1252* 0.10 TCGA-GM-A3NW-01 X 152818568 152818568 G A ATP2B3 Silent p.K633K 0.17 TCGA-GM-A3NW-01 X 48826174 48826174 G A KCND1 Missense_Mutation p.R169W 0.20 deleterious(0) possibly_damaging(0.568) TCGA-GM-A3XL-01 10 103295142 103295142 G C BTRC Missense_Mutation p.R460T 0.55 deleterious(0) possibly_damaging(0.803) TCGA-GM-A3XL-01 10 105361462 105361468 CCACCCC - SH3PXD2A 3'UTR 0.50 TCGA-GM-A3XL-01 10 37422843 37422843 G A ANKRD30A Splice_Site p.X150_splice 0.34 TCGA-GM-A3XL-01 10 70515176 70515196 ACTGGTCTCCTTCGTTGGATG - CCAR1 In_Frame_Del p.H503_G510delinsR 0.42 TCGA-GM-A3XL-01 10 75135915 75135915 T C ANXA7 Missense_Mutation p.M469V 0.29 tolerated(0.5) benign(0.033) TCGA-GM-A3XL-01 10 99030411 99030411 G T ARHGAP19 Intron 0.36 TCGA-GM-A3XL-01 11 102707291 102707291 G C MMP3 Intron 0.08 TCGA-GM-A3XL-01 11 115102163 115102163 C G CADM1 Missense_Mutation p.E158Q 0.17 deleterious(0) probably_damaging(1) TCGA-GM-A3XL-01 11 118006755 118006755 G C SCN4B 3'UTR 0.29 TCGA-GM-A3XL-01 11 121000467 121000467 A T TECTA Missense_Mutation p.I830L 0.52 tolerated(0.65) benign(0) TCGA-GM-A3XL-01 11 17190647 17190647 G C PIK3C2A Missense_Mutation p.I214M 0.07 tolerated_low_confidence(0.31) benign(0.004) TCGA-GM-A3XL-01 11 32999521 32999521 C G QSER1 3'UTR 0.34 TCGA-GM-A3XL-01 11 4976926 4976926 T A OR51A2 Silent p.T6T 0.42 TCGA-GM-A3XL-01 11 49974221 49974242 TCACTCTATGAAAACAAGACTA - OR4C13 Frame_Shift_Del p.L84Yfs*6 0.13 TCGA-GM-A3XL-01 11 58170355 58170355 G C OR5B3 Missense_Mutation p.F176L 0.33 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-GM-A3XL-01 11 60565929 60565929 C T MS4A10 Missense_Mutation p.P222S 0.39 deleterious(0.02) probably_damaging(0.97) TCGA-GM-A3XL-01 11 64508450 64508450 C T RASGRP2 Missense_Mutation p.R114Q 0.13 tolerated(0.57) benign(0.018) TCGA-GM-A3XL-01 12 130839167 130839167 C A PIWIL1 Missense_Mutation p.P377Q 0.54 tolerated(0.17) benign(0.09) TCGA-GM-A3XL-01 12 14829904 14829904 C T GUCY2C Missense_Mutation p.D278N 0.25 tolerated(1) benign(0.008) TCGA-GM-A3XL-01 12 40158269 40158269 T C SLC2A13 Silent p.T571T 0.22 TCGA-GM-A3XL-01 12 53776138 53776138 C G SP1 Missense_Mutation p.S136C 0.12 deleterious(0.01) possibly_damaging(0.869) TCGA-GM-A3XL-01 12 56721233 56721233 G C PAN2 Missense_Mutation p.I278M 0.09 tolerated(0.21) benign(0.023) TCGA-GM-A3XL-01 12 57397253 57397253 A C ZBTB39 Missense_Mutation p.S483R 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-GM-A3XL-01 12 6649333 6649333 G A IFFO1 3'UTR 0.16 TCGA-GM-A3XL-01 12 6804113 6804113 A G PIANP 3'UTR 0.09 TCGA-GM-A3XL-01 12 71898466 71898466 G T LGR5 Splice_Site p.X95_splice 0.12 TCGA-GM-A3XL-01 12 72355404 72355404 C G TPH2 Intron 0.15 TCGA-GM-A3XL-01 12 80730698 80730698 T G OTOGL Missense_Mutation p.S1583A 0.25 tolerated(0.53) benign(0.02) TCGA-GM-A3XL-01 13 114321757 114321757 G A GRK1 Missense_Mutation p.R19Q 0.29 tolerated(0.09) probably_damaging(0.999) TCGA-GM-A3XL-01 13 32811953 32811953 A G FRY Missense_Mutation p.E2083G 0.44 deleterious(0) probably_damaging(0.992) TCGA-GM-A3XL-01 14 23511993 23511993 G A PSMB11 Missense_Mutation p.V187M 0.37 deleterious(0) probably_damaging(0.99) TCGA-GM-A3XL-01 14 24590084 24590084 A G DCAF11 Missense_Mutation p.Q377R 0.10 deleterious(0) probably_damaging(0.996) TCGA-GM-A3XL-01 14 53560144 53560150 AACTTGA - DDHD1 Frame_Shift_Del p.F342* 0.14 TCGA-GM-A3XL-01 14 92474126 92474126 T C TRIP11 Missense_Mutation p.D462G 0.67 deleterious(0.03) benign(0.423) TCGA-GM-A3XL-01 15 23282958 23282958 A G HERC2P2 RNA 0.20 TCGA-GM-A3XL-01 15 58284996 58284996 G T ALDH1A2 Silent p.V235V 0.22 TCGA-GM-A3XL-01 15 65345996 65345996 G A RASL12 3'UTR 0.48 TCGA-GM-A3XL-01 15 65960402 65960402 G C DENND4A Nonsense_Mutation p.S1615* 0.24 TCGA-GM-A3XL-01 16 20492197 20492197 T C ACSM2A Missense_Mutation p.V488A 0.13 deleterious(0) possibly_damaging(0.872) TCGA-GM-A3XL-01 16 20839773 20839773 C G AC004381.6 Missense_Mutation p.P358A 0.09 tolerated(0.1) benign(0.403) TCGA-GM-A3XL-01 16 2164715 2164715 C T PKD1 Missense_Mutation p.R770Q 0.07 benign(0.07) TCGA-GM-A3XL-01 16 30566997 30566997 G A ZNF764 Missense_Mutation p.H249Y 0.09 deleterious(0) probably_damaging(1) TCGA-GM-A3XL-01 16 69362829 69362829 G A RP11-343C2.12 3'UTR 0.16 TCGA-GM-A3XL-01 16 72153202 72153202 C G PMFBP1 3'UTR 0.33 TCGA-GM-A3XL-01 16 90030911 90030911 G A DEF8 Missense_Mutation p.R455K 0.22 tolerated(1) benign(0.006) TCGA-GM-A3XL-01 17 11593039 11593039 C G DNAH9 Missense_Mutation p.C1300W 0.57 possibly_damaging(0.555) TCGA-GM-A3XL-01 17 61557696 61557696 A T ACE Splice_Site p.X219_splice 0.20 TCGA-GM-A3XL-01 17 73608003 73608003 G A MYO15B 3'Flank 0.07 TCGA-GM-A3XL-01 17 74466051 74466051 G T AANAT Nonstop_Mutation p.*253Lext*10 0.36 TCGA-GM-A3XL-01 17 7578462 7578464 GCG - TP53 In_Frame_Del p.R156del 0.48 TCGA-GM-A3XL-01 17 79082993 79082993 T C BAIAP2 Intron 0.59 TCGA-GM-A3XL-01 18 30517660 30517660 C G CCDC178 3'UTR 0.37 TCGA-GM-A3XL-01 18 31314329 31314329 G C ASXL3 Missense_Mutation p.K344N 0.25 probably_damaging(1) TCGA-GM-A3XL-01 18 51858148 51858148 T C STARD6 Missense_Mutation p.I117V 0.28 tolerated(0.77) benign(0.017) TCGA-GM-A3XL-01 19 15358094 15358094 C T BRD4 Intron 0.39 TCGA-GM-A3XL-01 19 30936510 30936510 C T ZNF536 Nonsense_Mutation p.Q681* 0.34 TCGA-GM-A3XL-01 19 33587199 33587199 G A GPATCH1 Silent p.V233V 0.07 TCGA-GM-A3XL-01 19 39789125 39789125 T G IFNL1 Missense_Mutation p.L191R 0.10 deleterious(0) possibly_damaging(0.847) TCGA-GM-A3XL-01 19 45851372 45851372 C G KLC3 Missense_Mutation p.H245D 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-GM-A3XL-01 19 58095837 58095837 G T ZIK1 Intron 0.23 TCGA-GM-A3XL-01 1 109235222 109235222 C G PRPF38B Missense_Mutation p.N3K 0.24 deleterious_low_confidence(0.01) benign(0.044) TCGA-GM-A3XL-01 1 152692276 152692276 T G C1orf68 Silent p.A93A 0.10 TCGA-GM-A3XL-01 1 154947330 154947330 G A CKS1B Intron 0.23 TCGA-GM-A3XL-01 1 156704177 156704177 C G RRNAD1 Missense_Mutation p.T338S 0.16 tolerated(0.15) benign(0.002) TCGA-GM-A3XL-01 1 158450315 158450315 A G OR10R2 Silent p.E216E 0.07 TCGA-GM-A3XL-01 1 158624532 158624532 G A SPTA1 Nonsense_Mutation p.Q969* 0.08 TCGA-GM-A3XL-01 1 179887553 179887553 G C TOR1AIP1 3'UTR 0.20 TCGA-GM-A3XL-01 1 185173860 185173860 G A SWT1 Silent p.K566K 0.16 TCGA-GM-A3XL-01 1 203712327 203712327 C T ATP2B4 3'UTR 0.21 TCGA-GM-A3XL-01 1 206757788 206757788 G C RASSF5 Missense_Mutation p.A254P 0.34 tolerated(0.2) probably_damaging(0.972) TCGA-GM-A3XL-01 1 207195857 207195857 G C C1orf116 Missense_Mutation p.P418A 0.22 tolerated(0.15) benign(0.38) TCGA-GM-A3XL-01 1 23411854 23411854 G A LUZP1 3'UTR 0.36 TCGA-GM-A3XL-01 1 237804204 237804204 G C RYR2 Missense_Mutation p.E2375Q 0.29 benign(0.053) TCGA-GM-A3XL-01 1 247587695 247587695 C A NLRP3 Missense_Mutation p.P317Q 0.53 tolerated(0.12) benign(0.175) TCGA-GM-A3XL-01 1 26887564 26887564 C T RPS6KA1 Missense_Mutation p.S466L 0.43 deleterious(0.01) benign(0.108) TCGA-GM-A3XL-01 1 36389058 36389058 C G AGO1 3'UTR 0.22 TCGA-GM-A3XL-01 1 47489663 47489663 G A CYP4X1 Silent p.Q58Q 0.33 TCGA-GM-A3XL-01 1 55589148 55589148 C T USP24 Silent p.T1416T 0.35 TCGA-GM-A3XL-01 1 71529633 71529633 C T ZRANB2 3'UTR 0.17 TCGA-GM-A3XL-01 1 75180309 75180309 C G CRYZ Missense_Mutation p.C145S 0.22 tolerated(0.51) benign(0) TCGA-GM-A3XL-01 20 17588032 17588032 G C DSTN 3'UTR 0.08 TCGA-GM-A3XL-01 20 20269404 20269404 T A C20orf26 Missense_Mutation p.F983Y 0.41 tolerated(0.38) benign(0.034) TCGA-GM-A3XL-01 20 2985753 2985753 G A PTPRA Missense_Mutation p.E264K 0.21 tolerated(0.29) probably_damaging(0.983) TCGA-GM-A3XL-01 20 31672753 31672753 G C BPIFB4 Missense_Mutation p.V245L 0.32 tolerated(0.09) benign(0.258) TCGA-GM-A3XL-01 20 34084421 34084421 G C CEP250 Silent p.L1061L 0.37 TCGA-GM-A3XL-01 20 3673310 3673310 G A SIGLEC1 Silent p.H1296H 0.39 TCGA-GM-A3XL-01 20 56223568 56223568 C G PMEPA1 3'UTR 0.31 TCGA-GM-A3XL-01 20 57289056 57289087 GTGTGGGGACCTGGTGCACCCGCTGGTCTACT - NPEPL1 Frame_Shift_Del p.C404Pfs*59 0.28 TCGA-GM-A3XL-01 21 32638444 32638444 G C TIAM1 Missense_Mutation p.P282R 0.17 tolerated(0.39) benign(0.013) TCGA-GM-A3XL-01 21 35469199 35469199 C A SLC5A3 Missense_Mutation p.Q568K 0.20 tolerated(0.64) benign(0.002) TCGA-GM-A3XL-01 21 45050302 45050302 G C HSF2BP Missense_Mutation p.Q159E 0.22 deleterious(0.01) possibly_damaging(0.764) TCGA-GM-A3XL-01 21 45978529 45978529 C T KRTAP10-3 Missense_Mutation p.E24K 0.11 deleterious(0.02) unknown(0) TCGA-GM-A3XL-01 22 41277817 41277822 CAGACA - XPNPEP3 In_Frame_Del p.R76_H77del 0.46 TCGA-GM-A3XL-01 22 41831763 41831763 C G TOB2 3'UTR 0.25 TCGA-GM-A3XL-01 22 42524250 42524250 C T CYP2D6 Missense_Mutation p.E257K 0.42 tolerated(0.26) benign(0.314) TCGA-GM-A3XL-01 2 160006963 160006963 C G TANC1 Nonsense_Mutation p.S193* 0.46 TCGA-GM-A3XL-01 2 202002114 202002114 C G CFLAR Intron 0.38 TCGA-GM-A3XL-01 2 210742807 210742807 G C UNC80 Missense_Mutation p.D1326H 0.12 probably_damaging(0.961) TCGA-GM-A3XL-01 2 220197269 220197269 C G RESP18 Missense_Mutation p.G70A 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.487) TCGA-GM-A3XL-01 2 73482182 73482182 A C FBXO41 3'UTR 0.17 TCGA-GM-A3XL-01 2 96553710 96553710 T A ANKRD36C Silent p.I35I 0.08 TCGA-GM-A3XL-01 2 97360105 97360105 A G FER1L5 RNA 0.32 TCGA-GM-A3XL-01 3 10291219 10291219 C A TATDN2 Nonsense_Mutation p.S112* 0.27 TCGA-GM-A3XL-01 3 107524509 107524509 T G BBX 3'UTR 0.37 TCGA-GM-A3XL-01 3 127398943 127398975 TGGGTGTGTGGCGCGTGGCCAAGCTCTTCCGCC - ABTB1 In_Frame_Del p.G383_L393del 0.32 TCGA-GM-A3XL-01 3 150345572 150345572 T A SELT 3'UTR 0.11 TCGA-GM-A3XL-01 3 164716431 164716431 C T SI Silent p.G1479G 0.16 TCGA-GM-A3XL-01 3 23963092 23963092 G C RPL15 3'Flank 0.30 TCGA-GM-A3XL-01 3 48699704 48699704 C G CELSR3 Missense_Mutation p.E122Q 0.36 tolerated_low_confidence(0.38) benign(0.003) TCGA-GM-A3XL-01 3 49166536 49166536 G A LAMB2 Nonsense_Mutation p.R550* 0.09 TCGA-GM-A3XL-01 4 104066774 104066774 A G CENPE Missense_Mutation p.I1493T 0.06 benign(0.245) TCGA-GM-A3XL-01 4 122059806 122059806 G A TNIP3 Intron 0.31 TCGA-GM-A3XL-01 4 122071373 122071373 G C TNIP3 Missense_Mutation p.A242G 0.15 deleterious(0) possibly_damaging(0.492) TCGA-GM-A3XL-01 4 141310309 141310309 C G CLGN 3'UTR 0.26 TCGA-GM-A3XL-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.46 deleterious(0) probably_damaging(1) TCGA-GM-A3XL-01 4 154271274 154271274 C G MND1 Missense_Mutation p.S21C 0.48 deleterious(0.01) possibly_damaging(0.489) TCGA-GM-A3XL-01 4 155487118 155487118 T C FGB Silent p.D91D 0.62 TCGA-GM-A3XL-01 4 188925816 188925816 C G ZFP42 3'UTR 0.40 TCGA-GM-A3XL-01 4 79500181 79500181 G C ANXA3 Missense_Mutation p.G35A 0.30 deleterious(0) probably_damaging(0.999) TCGA-GM-A3XL-01 5 138778163 138778163 G A DNAJC18 5'Flank 0.10 TCGA-GM-A3XL-01 5 139713173 139713173 A T HBEGF 3'UTR 0.38 TCGA-GM-A3XL-01 5 140085820 140085820 G T ZMAT2 3'UTR 0.24 TCGA-GM-A3XL-01 5 140231399 140231399 C G PCDHA9 Intron 0.10 TCGA-GM-A3XL-01 5 140595427 140595427 C T PCDHB13 Missense_Mutation p.R578W 0.19 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-GM-A3XL-01 5 176308172 176308172 A C HK3 Missense_Mutation p.C892G 0.30 deleterious(0) probably_damaging(1) TCGA-GM-A3XL-01 5 177474324 177474324 A G FAM153C Intron 0.58 TCGA-GM-A3XL-01 6 100841736 100841736 T C SIM1 Silent p.E399E 0.26 TCGA-GM-A3XL-01 6 100841747 100841747 C A SIM1 Nonsense_Mutation p.E396* 0.29 TCGA-GM-A3XL-01 6 32130348 32130348 C G PPT2 Missense_Mutation p.F244L 0.07 tolerated(0.68) benign(0.005) TCGA-GM-A3XL-01 6 43255172 43255172 T G TTBK1 3'UTR 0.14 TCGA-GM-A3XL-01 6 51890820 51890820 G A PKHD1 Missense_Mutation p.P1263L 0.43 tolerated(0.37) benign(0.002) TCGA-GM-A3XL-01 6 74176043 74176066 ATTATAAAGTATTAAACCGGCGTA - MTO1 In_Frame_Del p.H110_K118delinsQ 0.38 TCGA-GM-A3XL-01 6 82456465 82456465 G C FAM46A 3'UTR 0.52 TCGA-GM-A3XL-01 7 100028728 100028728 C T MEPCE Missense_Mutation p.R363C 0.57 deleterious(0) possibly_damaging(0.725) TCGA-GM-A3XL-01 7 111161425 111161425 C G IMMP2L Missense_Mutation p.V27L 0.15 tolerated(0.26) benign(0.011) TCGA-GM-A3XL-01 7 128491319 128491319 A G FLNC Missense_Mutation p.N1858S 0.20 tolerated(0.1) benign(0.345) TCGA-GM-A3XL-01 7 154684522 154684522 C T DPP6 3'UTR 0.43 TCGA-GM-A3XL-01 7 88424169 88424169 A G C7orf62 Missense_Mutation p.Y30H 0.23 deleterious(0) probably_damaging(0.955) TCGA-GM-A3XL-01 7 93633541 93633541 G C BET1 5'UTR 0.21 TCGA-GM-A3XL-01 8 114031335 114031335 T C CSMD3 Missense_Mutation p.S331G 0.20 tolerated(0.73) benign(0.02) TCGA-GM-A3XL-01 8 141468548 141468548 G A TRAPPC9 Missense_Mutation p.A39V 0.16 deleterious_low_confidence(0) unknown(0) TCGA-GM-A3XL-01 8 144463488 144463488 A T RHPN1 Nonsense_Mutation p.K488* 0.29 TCGA-GM-A3XL-01 8 144550658 144550658 C G ZC3H3 Missense_Mutation p.E667Q 0.16 tolerated(0.38) benign(0.367) TCGA-GM-A3XL-01 8 42693372 42693372 G A THAP1 Silent p.T125T 0.42 TCGA-GM-A3XL-01 8 97154836 97154836 A C GDF6 3'UTR 0.18 TCGA-GM-A3XL-01 9 133577474 133577482 ATCCCGCCA - EXOSC2 Intron 0.24 TCGA-GM-A3XL-01 9 140260656 140260656 C G EXD3 Intron 0.44 TCGA-GM-A3XL-01 9 15190604 15190604 T G TTC39B Silent p.A351A 0.32 TCGA-GM-A3XL-01 9 77112848 77112848 T G RORB 5'UTR 0.08 TCGA-GM-A3XL-01 X 134993474 134993474 G C SAGE1 Missense_Mutation p.R710T 0.32 tolerated(1) possibly_damaging(0.793) TCGA-GM-A3XL-01 X 152956984 152956984 G A SLC6A8 Missense_Mutation p.R207Q 0.22 tolerated(0.19) benign(0.041) TCGA-GM-A3XL-01 X 2138973 2138973 T A DHRSX 3'UTR 0.42 TCGA-GM-A3XL-01 X 48922006 48922006 C G CCDC120 Missense_Mutation p.R144G 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-GM-A3XL-01 X 73744433 73744433 T - SLC16A2 Frame_Shift_Del p.M274Cfs*69 0.29 TCGA-GM-A3XL-01 X 78012390 78012390 A G LPAR4 3'UTR 0.30 TCGA-GM-A4E0-01 10 64403531 64403531 C A ZNF365 Intron 0.26 TCGA-GM-A4E0-01 10 89717748 89717748 T A PTEN Missense_Mutation p.F258Y 0.31 tolerated(0.45) benign(0.01) TCGA-GM-A4E0-01 10 89717749 89717749 C A PTEN Missense_Mutation p.F258L 0.31 tolerated(0.07) benign(0.012) TCGA-GM-A4E0-01 11 76969468 76969468 G A GDPD4 Missense_Mutation p.S276L 0.16 deleterious(0.01) benign(0.272) TCGA-GM-A4E0-01 11 95712202 95712202 A G MAML2 Silent p.D1127D 0.21 TCGA-GM-A4E0-01 12 110924358 110924358 A G FAM216A Silent p.R152R 0.20 TCGA-GM-A4E0-01 12 112664523 112664523 T C HECTD4 Silent p.L2152L 0.17 TCGA-GM-A4E0-01 13 114549506 114549506 C T GAS6 Missense_Mutation p.V113M 0.17 deleterious(0) possibly_damaging(0.584) TCGA-GM-A4E0-01 15 33905535 33905535 C T RYR3 Silent p.D772D 0.10 TCGA-GM-A4E0-01 15 43991376 43991376 G A CKMT1A 3'UTR 0.13 TCGA-GM-A4E0-01 16 18893628 18893628 C A SMG1 Silent p.V384V 0.12 TCGA-GM-A4E0-01 16 68842369 68842369 A - CDH1 Frame_Shift_Del p.N144Tfs*71 0.17 TCGA-GM-A4E0-01 17 67080627 67080627 C T ABCA6 Silent p.L1402L 0.30 TCGA-GM-A4E0-01 18 19140926 19140926 G C ESCO1 Missense_Mutation p.A616G 0.11 deleterious(0) probably_damaging(0.992) TCGA-GM-A4E0-01 19 44791419 44791419 C - ZNF235 Frame_Shift_Del p.R723Sfs*27 0.10 TCGA-GM-A4E0-01 19 54660549 54660549 C A LENG1 Missense_Mutation p.S176I 0.12 tolerated(0.19) benign(0.001) TCGA-GM-A4E0-01 19 55494668 55494668 C T NLRP2 Silent p.D534D 0.10 TCGA-GM-A4E0-01 1 152283588 152283588 C T FLG Silent p.S1258S 0.22 TCGA-GM-A4E0-01 1 70385459 70385459 C T LRRC7 Intron 0.15 TCGA-GM-A4E0-01 1 89271719 89271719 T A PKN2 Intron 0.14 TCGA-GM-A4E0-01 20 44596921 44596922 - A ZNF335 Intron 0.19 TCGA-GM-A4E0-01 20 7980429 7980429 T C TMX4 Silent p.K139K 0.08 TCGA-GM-A4E0-01 21 11039395 11039395 C A BAGE2 RNA 0.05 TCGA-GM-A4E0-01 22 39916889 39916889 C T ATF4 5'UTR 0.21 TCGA-GM-A4E0-01 2 27930949 27930949 C T AC074091.13 Silent p.S28S 0.11 TCGA-GM-A4E0-01 2 31424801 31424801 C A CAPN14 Missense_Mutation p.G160C 0.10 deleterious(0) probably_damaging(1) TCGA-GM-A4E0-01 3 49141350 49141350 G T QARS Missense_Mutation p.F107L 0.17 tolerated(0.08) possibly_damaging(0.472) TCGA-GM-A4E0-01 5 11159759 11159759 C A CTNND2 Silent p.S696S 0.06 TCGA-GM-A4E0-01 5 177466397 177466397 G A FAM153C Missense_Mutation p.G40R 0.07 deleterious_low_confidence(0) benign(0.245) TCGA-GM-A4E0-01 5 64593049 64593049 T C ADAMTS6 Intron 0.16 TCGA-GM-A4E0-01 5 93820544 93820544 T A KIAA0825 Missense_Mutation p.K354N 0.12 tolerated(0.37) benign(0.015) TCGA-GM-A4E0-01 6 168069781 168069781 G A RP11-351J23.2 RNA 0.16 TCGA-GM-A4E0-01 6 30310769 30310769 T C TRIM39 3'UTR 0.12 TCGA-GM-A4E0-01 6 41738550 41738550 C T FRS3 Missense_Mutation p.R429H 0.10 tolerated(0.18) benign(0.001) TCGA-GM-A4E0-01 6 44922335 44922335 G A SUPT3H Missense_Mutation p.A208V 0.17 tolerated(0.17) benign(0.287) TCGA-GM-A4E0-01 9 18574056 18574056 G A ADAMTSL1 Missense_Mutation p.R89Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-GM-A4E0-01 X 153694400 153694400 G A PLXNA3 Silent p.P885P 0.14 TCGA-GM-A5PV-01 10 121685689 121685689 G T SEC23IP Missense_Mutation p.V755L 0.25 tolerated(0.05) benign(0.04) TCGA-GM-A5PV-01 10 21804570 21804570 C G SKIDA1 Missense_Mutation p.D728H 0.05 deleterious(0) unknown(0) TCGA-GM-A5PV-01 10 89692792 89692792 C G PTEN Missense_Mutation p.D92E 0.38 deleterious(0) probably_damaging(0.996) TCGA-GM-A5PV-01 10 89720666 89720666 T - PTEN Frame_Shift_Del p.W274Gfs*2 0.38 TCGA-GM-A5PV-01 10 98718102 98718102 T C LCOR 3'UTR 0.39 TCGA-GM-A5PV-01 11 16068116 16068116 C T SOX6 Missense_Mutation p.D523N 0.26 tolerated(0.08) benign(0.346) TCGA-GM-A5PV-01 11 47200771 47200771 T C PACSIN3 Missense_Mutation p.D280G 0.24 deleterious(0) probably_damaging(0.999) TCGA-GM-A5PV-01 11 89907045 89907045 G T NAALAD2 Missense_Mutation p.L488F 0.08 tolerated(0.59) benign(0.082) TCGA-GM-A5PV-01 12 131616324 131616324 G A GPR133 Missense_Mutation p.D744N 0.42 tolerated(0.08) benign(0.23) TCGA-GM-A5PV-01 12 53693722 53693722 C T C12orf10 Silent p.L67L 0.07 TCGA-GM-A5PV-01 15 42361019 42361019 A G PLA2G4D Missense_Mutation p.L784P 0.34 deleterious(0) probably_damaging(0.998) TCGA-GM-A5PV-01 16 66966008 66966008 T C FAM96B 3'UTR 0.48 TCGA-GM-A5PV-01 16 68862076 68862076 G A CDH1 Splice_Site p.X722_splice 0.38 TCGA-GM-A5PV-01 17 35298024 35298024 A T LHX1 Missense_Mutation p.D172V 0.32 deleterious(0.03) benign(0.412) TCGA-GM-A5PV-01 17 7507083 7507083 C T FXR2 Silent p.L147L 0.10 TCGA-GM-A5PV-01 18 18546962 18546962 A G ROCK1 Silent p.L1090L 0.28 TCGA-GM-A5PV-01 19 2042015 2042015 T C MKNK2 Missense_Mutation p.M257V 0.36 deleterious(0.01) benign(0.422) TCGA-GM-A5PV-01 19 56132545 56132545 C T ZNF784 3'UTR 0.24 TCGA-GM-A5PV-01 19 58384887 58384887 C T ZNF814 Missense_Mutation p.R624H 0.05 deleterious(0.01) probably_damaging(0.912) TCGA-GM-A5PV-01 1 10364109 10364109 C T KIF1B Intron 0.14 TCGA-GM-A5PV-01 1 154245153 154245153 C G HAX1 5'UTR 0.31 TCGA-GM-A5PV-01 1 156434177 156434177 G C MEF2D 3'UTR 0.07 TCGA-GM-A5PV-01 1 162470726 162470726 C T UHMK1 Silent p.D195D 0.05 TCGA-GM-A5PV-01 1 186143692 186143692 G A HMCN1 Silent p.Q5287Q 0.05 TCGA-GM-A5PV-01 1 19513761 19513761 C G UBR4 Missense_Mutation p.S510T 0.06 benign(0.005) TCGA-GM-A5PV-01 1 232577614 232577614 C A SIPA1L2 Silent p.G1146G 0.08 TCGA-GM-A5PV-01 1 23884532 23884532 A G ID3 3'UTR 0.19 TCGA-GM-A5PV-01 1 3679228 3679228 C G CCDC27 Silent p.L302L 0.35 TCGA-GM-A5PV-01 1 52552607 52552607 T G BTF3L4 3'UTR 0.29 TCGA-GM-A5PV-01 1 59811926 59811926 C T FGGY Silent p.S107S 0.06 TCGA-GM-A5PV-01 22 23523318 23523318 C T BCR Silent p.I57I 0.26 TCGA-GM-A5PV-01 2 11922610 11922610 C T LPIN1 Missense_Mutation p.T463M 0.33 tolerated(0.12) benign(0.039) TCGA-GM-A5PV-01 3 149459264 149459264 C T COMMD2 3'UTR 0.38 TCGA-GM-A5PV-01 3 98518295 98518295 T C DCBLD2 Missense_Mutation p.Y750C 0.08 deleterious(0) probably_damaging(0.999) TCGA-GM-A5PV-01 4 106196214 106196214 G A TET2 Missense_Mutation p.R1516Q 0.09 tolerated(0.1) benign(0.316) TCGA-GM-A5PV-01 4 113436295 113436295 G C NEUROG2 Missense_Mutation p.R113G 0.07 deleterious(0) probably_damaging(0.993) TCGA-GM-A5PV-01 5 137088572 137088572 A G HNRNPA0 3'UTR 0.37 TCGA-GM-A5PV-01 5 140594909 140594909 C T PCDHB13 Missense_Mutation p.T405M 0.12 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-GM-A5PV-01 6 25652625 25652625 C G SCGN 5'UTR 0.03 TCGA-GM-A5PV-01 6 70926628 70926628 C T COL9A1 Missense_Mutation p.R913Q 0.25 benign(0.033) TCGA-GM-A5PV-01 6 82936959 82936959 C G IBTK Missense_Mutation p.G202R 0.35 deleterious(0) probably_damaging(0.986) TCGA-GM-A5PV-01 7 151871283 151871283 C A KMT2C Missense_Mutation p.A3103S 0.10 probably_damaging(0.998) TCGA-GM-A5PV-01 7 99227520 99227520 C G ZSCAN25 Missense_Mutation p.H504Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-GM-A5PV-01 8 90965699 90965699 G A NBN Missense_Mutation p.H540Y 0.33 tolerated(0.9) benign(0.005) TCGA-GM-A5PV-01 X 140984390 140984390 C T MAGEC3 Intron 0.06 TCGA-GM-A5PV-01 X 148582511 148582511 T C IDS Missense_Mutation p.H159R 0.04 tolerated(0.11) probably_damaging(0.919) TCGA-GM-A5PV-01 X 153582335 153582335 T A FLNA Silent p.G1878G 0.27 TCGA-GM-A5PV-01 X 17771461 17771461 G T SCML1 Missense_Mutation p.K313N 0.08 deleterious(0) probably_damaging(1) TCGA-GM-A5PX-01 10 105207212 105207212 G C CALHM2 Nonsense_Mutation p.Y223* 0.16 TCGA-GM-A5PX-01 10 31320819 31320819 G A ZNF438 5'UTR 0.20 TCGA-GM-A5PX-01 10 49998813 49998813 G T WDFY4 Missense_Mutation p.D1370Y 0.29 tolerated(0.09) probably_damaging(0.95) TCGA-GM-A5PX-01 10 75113464 75113464 G A TTC18 Nonsense_Mutation p.R34* 0.09 TCGA-GM-A5PX-01 11 119050480 119050480 C T NLRX1 Nonsense_Mutation p.R584* 0.19 TCGA-GM-A5PX-01 12 114841721 114841721 G A TBX5 5'UTR 0.28 TCGA-GM-A5PX-01 12 62959110 62959110 C T MON2 Nonsense_Mutation p.Q1376* 0.19 TCGA-GM-A5PX-01 13 31309693 31309693 G A ALOX5AP 5'UTR 0.08 TCGA-GM-A5PX-01 14 103196082 103196082 G T RCOR1 3'UTR 0.26 TCGA-GM-A5PX-01 14 94953739 94953739 G T SERPINA12 Silent p.L382L 0.29 TCGA-GM-A5PX-01 15 41227213 41227213 C T DLL4 Missense_Mutation p.R380C 0.27 deleterious(0.02) possibly_damaging(0.832) TCGA-GM-A5PX-01 16 28916828 28916828 G A RABEP2 Missense_Mutation p.L500F 0.24 deleterious(0.02) benign(0.041) TCGA-GM-A5PX-01 16 68845663 68845664 - A CDH1 Frame_Shift_Ins p.I304Nfs*7 0.25 TCGA-GM-A5PX-01 17 7147191 7147191 C T CTDNEP1 3'UTR 0.41 TCGA-GM-A5PX-01 17 75212151 75212151 C T SEC14L1 Intron 0.36 TCGA-GM-A5PX-01 18 59482336 59482336 G A RNF152 3'UTR 0.32 TCGA-GM-A5PX-01 19 11467547 11467547 A G DKFZP761J1410 5'UTR 0.11 TCGA-GM-A5PX-01 19 19339131 19339131 C T NCAN Missense_Mutation p.P901L 0.20 tolerated(0.22) benign(0.004) TCGA-GM-A5PX-01 19 3806016 3806016 T C ZFR2 Silent p.G917G 0.30 TCGA-GM-A5PX-01 19 38942506 38942506 C T RYR1 Silent p.L409L 0.12 TCGA-GM-A5PX-01 19 9072872 9072872 T G MUC16 Silent p.T4858T 0.20 TCGA-GM-A5PX-01 1 112020915 112020915 C T C1orf162 3'UTR 0.42 TCGA-GM-A5PX-01 1 153913077 153913077 G C DENND4B Missense_Mutation p.I444M 0.14 deleterious(0) benign(0.255) TCGA-GM-A5PX-01 1 182025619 182025619 G A ZNF648 Silent p.C509C 0.13 TCGA-GM-A5PX-01 1 247695329 247695329 G A OR2C3 Missense_Mutation p.T162M 0.22 tolerated(0.05) possibly_damaging(0.626) TCGA-GM-A5PX-01 1 32384642 32384642 T G PTP4A2 Missense_Mutation p.I9L 0.28 tolerated(0.06) probably_damaging(0.977) TCGA-GM-A5PX-01 1 37959690 37959690 A G MEAF6 3'UTR 0.30 TCGA-GM-A5PX-01 20 9519597 9519597 T G PAK7 3'UTR 0.25 TCGA-GM-A5PX-01 21 44514777 44514777 T C U2AF1 Missense_Mutation p.Q157R 0.30 deleterious(0) probably_damaging(0.922) TCGA-GM-A5PX-01 22 33402387 33402387 A G SYN3 Silent p.I87I 0.19 TCGA-GM-A5PX-01 22 36708257 36708257 G A MYH9 Missense_Mutation p.P522L 0.31 probably_damaging(0.995) TCGA-GM-A5PX-01 22 40662032 40662032 T C TNRC6B Missense_Mutation p.C600R 0.14 tolerated(0.25) benign(0.187) TCGA-GM-A5PX-01 2 37443542 37443542 G A CEBPZ Missense_Mutation p.S743L 0.18 deleterious(0.01) benign(0.341) TCGA-GM-A5PX-01 5 140604476 140604476 G T PCDHB14 Missense_Mutation p.A467S 0.25 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-GM-A5PX-01 5 36984780 36984780 A G NIPBL Missense_Mutation p.K500E 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GM-A5PX-01 5 70793121 70793121 T C BDP1 Silent p.V608V 0.43 TCGA-GM-A5PX-01 6 34824168 34824168 C G UHRF1BP1 Missense_Mutation p.L425V 0.21 tolerated(0.16) benign(0) TCGA-GM-A5PX-01 7 115890285 115890285 G A TES Missense_Mutation p.R146Q 0.21 deleterious(0.02) probably_damaging(0.968) TCGA-GM-A5PX-01 7 142334844 142334844 C T TRBV20-1 Missense_Mutation p.T89I 0.05 deleterious(0.05) probably_damaging(0.962) TCGA-GM-A5PX-01 8 146036125 146036125 C T ZNF517 3'Flank 0.22 TCGA-GM-A5PX-01 9 110249365 110249377 CAGCCCGCGTAAT - KLF4 Frame_Shift_Del p.D399Afs*41 0.11 TCGA-GM-A5PX-01 9 129265489 129265489 G A MVB12B Missense_Mutation p.A303T 0.22 deleterious(0) benign(0.11) TCGA-GM-A5PX-01 9 140174604 140174604 G C TOR4A 3'UTR 0.25 TCGA-GM-A5PX-01 X 140785800 140785800 G A SPANXD Missense_Mutation p.P39L 0.23 tolerated(1) probably_damaging(0.999) TCGA-HN-A2NL-01 10 115355443 115355443 G T NRAP Missense_Mutation p.T1492N 0.39 tolerated(0.2) probably_damaging(0.998) TCGA-HN-A2NL-01 10 125801928 125801928 A G CHST15 Missense_Mutation p.Y308H 0.48 deleterious(0.03) probably_damaging(0.928) TCGA-HN-A2NL-01 10 64573499 64573499 G T EGR2 Missense_Mutation p.A300E 0.90 tolerated(0.47) possibly_damaging(0.587) TCGA-HN-A2NL-01 10 73048351 73048351 A C UNC5B Missense_Mutation p.K310Q 0.75 deleterious(0.03) probably_damaging(0.99) TCGA-HN-A2NL-01 11 1023613 1023613 C A MUC6 Missense_Mutation p.G1141V 0.41 unknown(0) TCGA-HN-A2NL-01 11 1756661 1756661 T G IFITM10 Splice_Site p.X180_splice 0.42 TCGA-HN-A2NL-01 11 20178187 20178187 C T DBX1 Missense_Mutation p.R241H 0.38 deleterious_low_confidence(0.02) benign(0.151) TCGA-HN-A2NL-01 11 49194915 49194915 T C FOLH1 Missense_Mutation p.K407E 0.39 tolerated(0.08) benign(0.02) TCGA-HN-A2NL-01 11 55703337 55703338 - A OR5I1 Frame_Shift_Ins p.C181Lfs*2 0.41 TCGA-HN-A2NL-01 11 58170313 58170313 T C OR5B3 Silent p.R190R 0.45 TCGA-HN-A2NL-01 11 66436729 66436729 C T RBM4B Missense_Mutation p.R149Q 0.48 deleterious(0) benign(0.1) TCGA-HN-A2NL-01 11 82645169 82645169 C T C11orf82 Missense_Mutation p.T930M 0.23 tolerated(0.08) benign(0.005) TCGA-HN-A2NL-01 12 118823947 118823947 G C SUDS3 Missense_Mutation p.M99I 0.30 tolerated(0.08) benign(0.08) TCGA-HN-A2NL-01 12 20522466 20522466 G A PDE3A Missense_Mutation p.G83E 0.38 tolerated_low_confidence(0.07) benign(0.001) TCGA-HN-A2NL-01 12 2909686 2909686 G A FKBP4 Silent p.L325L 0.35 TCGA-HN-A2NL-01 12 39711981 39711981 C G KIF21A Missense_Mutation p.A1268P 0.68 tolerated(0.14) benign(0.003) TCGA-HN-A2NL-01 12 49434672 49434678 GCCCCAA - KMT2D Frame_Shift_Del p.L2292Hfs*28 0.88 TCGA-HN-A2NL-01 12 56386048 56386048 A C RAB5B 3'UTR 0.38 TCGA-HN-A2NL-01 12 57910296 57910296 C G MARS Missense_Mutation p.L879V 0.39 deleterious(0) probably_damaging(0.991) TCGA-HN-A2NL-01 12 78513280 78513280 A G NAV3 Missense_Mutation p.I1102V 0.40 deleterious(0.01) benign(0.002) TCGA-HN-A2NL-01 12 8082369 8082400 GCACGGTGACTTGCTTTTCTTGTGACATCCTT - SLC2A3 Frame_Shift_Del p.M249Afs*3 0.15 TCGA-HN-A2NL-01 13 103397321 103397321 C G LINC00283 RNA 0.25 TCGA-HN-A2NL-01 13 109777494 109777494 T C MYO16 Silent p.L1168L 0.42 TCGA-HN-A2NL-01 15 62243152 62243152 G T VPS13C Missense_Mutation p.L1510M 0.78 deleterious(0.01) benign(0.017) TCGA-HN-A2NL-01 15 78305580 78305580 C A TBC1D2B Missense_Mutation p.D619Y 0.59 deleterious(0) probably_damaging(0.987) TCGA-HN-A2NL-01 16 30410447 30410447 G A ZNF48 3'UTR 0.75 TCGA-HN-A2NL-01 16 70177496 70177496 T C PDPR Silent p.T563T 0.24 TCGA-HN-A2NL-01 16 8875208 8875208 G A ABAT Missense_Mutation p.R475H 0.76 deleterious(0) probably_damaging(1) TCGA-HN-A2NL-01 17 18060272 18060272 C G MYO15A Missense_Mutation p.S2869C 0.45 unknown(0) TCGA-HN-A2NL-01 17 18874526 18874526 G A SLC5A10 Missense_Mutation p.D281N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-HN-A2NL-01 17 29585356 29585365 TTTTAGGTGG - NF1 Splice_Site p.X1392_splice 0.79 TCGA-HN-A2NL-01 17 59561020 59561020 C T TBX4 3'UTR 0.24 TCGA-HN-A2NL-01 17 74467619 74467619 T C RHBDF2 3'UTR 0.27 TCGA-HN-A2NL-01 17 7911260 7911260 G T GUCY2D Silent p.G526G 0.30 TCGA-HN-A2NL-01 18 19088164 19088164 C G GREB1L Missense_Mutation p.S1485C 0.18 deleterious(0) probably_damaging(0.981) TCGA-HN-A2NL-01 18 28737520 28737520 A C DSC1 Missense_Mutation p.C55W 0.10 deleterious(0) probably_damaging(0.909) TCGA-HN-A2NL-01 18 3188901 3188901 T A MYOM1 Nonsense_Mutation p.K206* 0.05 TCGA-HN-A2NL-01 19 16918863 16918863 G C NWD1 Missense_Mutation p.Q1401H 0.56 deleterious(0.02) benign(0.205) TCGA-HN-A2NL-01 19 19387389 19387389 A T SUGP1 3'UTR 0.38 TCGA-HN-A2NL-01 19 22940729 22940729 G A ZNF99 Missense_Mutation p.S661F 0.31 tolerated(0.75) benign(0.038) TCGA-HN-A2NL-01 19 31768092 31768092 G A TSHZ3 Silent p.S869S 0.39 TCGA-HN-A2NL-01 19 36125255 36125255 G T RBM42 Missense_Mutation p.S372I 0.42 deleterious(0) unknown(0) TCGA-HN-A2NL-01 19 8923868 8923868 G A ZNF558 Missense_Mutation p.S93F 0.40 tolerated(0.16) possibly_damaging(0.603) TCGA-HN-A2NL-01 19 8923873 8923873 C A ZNF558 Silent p.L91L 0.38 TCGA-HN-A2NL-01 1 103480081 103480081 G T COL11A1 Missense_Mutation p.L520I 0.54 probably_damaging(0.997) TCGA-HN-A2NL-01 1 11254927 11254927 C G ANGPTL7 Missense_Mutation p.N296K 0.92 deleterious(0.02) benign(0.086) TCGA-HN-A2NL-01 1 14925608 14925608 G T KAZN Nonsense_Mutation p.E39* 0.55 TCGA-HN-A2NL-01 1 201172878 201172878 A T IGFN1 Missense_Mutation p.I254F 0.88 benign(0.017) TCGA-HN-A2NL-01 1 23857034 23857034 C A E2F2 Silent p.P84P 0.43 TCGA-HN-A2NL-01 1 244615099 244615099 G T ADSS Nonsense_Mutation p.Y7* 0.48 TCGA-HN-A2NL-01 1 34330058 34330058 A T HMGB4 Missense_Mutation p.D89V 0.39 deleterious(0) probably_damaging(0.999) TCGA-HN-A2NL-01 1 39854171 39854171 T C MACF1 Silent p.R3157R 0.45 TCGA-HN-A2NL-01 1 44202021 44202021 C G ST3GAL3 Missense_Mutation p.L30V 0.43 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-HN-A2NL-01 1 49100227 49100268 GAGAGGGATCCAGCCAGTGACGATTCAGATCAAATCCCATCA - AGBL4 In_Frame_Del p.L283_S296del 0.36 TCGA-HN-A2NL-01 20 31678569 31678569 G A BPIFB4 Silent p.P369P 0.51 TCGA-HN-A2NL-01 20 34092374 34092374 G A CEP250 Silent p.Q2059Q 0.61 TCGA-HN-A2NL-01 20 35749021 35749021 G A MROH8 Silent p.N732N 0.44 TCGA-HN-A2NL-01 20 62594493 62594493 G C ZNF512B Silent p.S641S 0.38 TCGA-HN-A2NL-01 21 42824760 42824760 G A MX1 Missense_Mutation p.M574I 0.63 tolerated(0.97) benign(0.004) TCGA-HN-A2NL-01 22 24204354 24204354 G C SLC2A11 Missense_Mutation p.G36R 0.80 deleterious(0.01) probably_damaging(1) TCGA-HN-A2NL-01 2 128079739 128079739 T C MAP3K2 Missense_Mutation p.T310A 0.85 tolerated(0.41) benign(0.017) TCGA-HN-A2NL-01 2 160832693 160832693 A G PLA2R1 Silent p.H827H 0.90 TCGA-HN-A2NL-01 2 179514910 179514911 - GAG TTN In_Frame_Ins p.P13266_E13267insS 0.84 TCGA-HN-A2NL-01 2 179641594 179641594 G A TTN Missense_Mutation p.T1666I 0.80 TCGA-HN-A2NL-01 2 187540546 187540546 G C ITGAV Splice_Site p.X941_splice 0.90 TCGA-HN-A2NL-01 2 207171420 207171420 A T ZDBF2 Missense_Mutation p.Q723L 0.82 tolerated(0.08) benign(0.275) TCGA-HN-A2NL-01 2 215851351 215851351 C A ABCA12 Missense_Mutation p.A1360S 0.82 deleterious(0) probably_damaging(0.972) TCGA-HN-A2NL-01 2 219925127 219925127 C A IHH Silent p.V21V 0.71 TCGA-HN-A2NL-01 2 27601550 27601550 G A ZNF513 Nonsense_Mutation p.R195* 0.71 TCGA-HN-A2NL-01 2 39109678 39109678 G A MORN2 3'UTR 0.11 TCGA-HN-A2NL-01 2 74477618 74477618 A T SLC4A5 Missense_Mutation p.I502N 0.09 deleterious(0) possibly_damaging(0.88) TCGA-HN-A2NL-01 2 95951442 95951442 G C PROM2 Missense_Mutation p.G644A 0.42 tolerated(0.13) benign(0.034) TCGA-HN-A2NL-01 3 151160785 151160785 C T IGSF10 Missense_Mutation p.D1984N 0.38 deleterious(0.05) benign(0.258) TCGA-HN-A2NL-01 3 196296086 196296086 G A FBXO45 Silent p.E77E 0.44 TCGA-HN-A2NL-01 4 164061489 164061489 C T NAF1 Missense_Mutation p.R255Q 0.86 deleterious(0.03) possibly_damaging(0.903) TCGA-HN-A2NL-01 4 25390489 25390489 T C ANAPC4 Missense_Mutation p.L167P 0.28 deleterious(0) probably_damaging(0.999) TCGA-HN-A2NL-01 4 7774593 7774593 G C AFAP1 Missense_Mutation p.T736S 0.56 tolerated(0.12) probably_damaging(0.933) TCGA-HN-A2NL-01 4 86893257 86893257 T - ARHGAP24 Frame_Shift_Del p.P224Lfs*26 0.57 TCGA-HN-A2NL-01 5 134223692 134223692 A C TXNDC15 Silent p.G137G 0.79 TCGA-HN-A2NL-01 5 134223693 134223693 G T TXNDC15 Missense_Mutation p.A138S 0.80 tolerated(0.49) benign(0.003) TCGA-HN-A2NL-01 6 123892141 123892141 G T TRDN Silent p.V53V 0.41 TCGA-HN-A2NL-01 6 43170930 43170930 G T CUL9 Missense_Mutation p.K1279N 0.43 deleterious(0) probably_damaging(0.911) TCGA-HN-A2NL-01 7 108524612 108524616 CATTG - C7orf66 5'UTR 0.35 TCGA-HN-A2NL-01 7 138764516 138764516 G C ZC3HAV1 Missense_Mutation p.L391V 0.91 tolerated(0.67) benign(0.054) TCGA-HN-A2NL-01 7 23164391 23164391 A G KLHL7 Missense_Mutation p.Y103C 0.49 deleterious(0) possibly_damaging(0.831) TCGA-HN-A2NL-01 7 75442656 75442656 G T CCL24 Silent p.S53S 0.39 TCGA-HN-A2NL-01 7 97991699 97991699 G T BAIAP2L1 Missense_Mutation p.L33M 0.49 tolerated(0.64) probably_damaging(0.996) TCGA-HN-A2NL-01 7 99655431 99655431 C G ZSCAN21 Missense_Mutation p.H170Q 0.41 tolerated(0.31) benign(0.029) TCGA-HN-A2NL-01 8 144788988 144788988 G A CCDC166 Missense_Mutation p.T399M 0.43 deleterious_low_confidence(0.03) benign(0.275) TCGA-HN-A2NL-01 8 30038046 30038046 T C DCTN6 Missense_Mutation p.I125T 0.41 deleterious(0.04) possibly_damaging(0.615) TCGA-HN-A2NL-01 8 66621434 66621434 T C MTFR1 3'UTR 0.36 TCGA-HN-A2NL-01 9 132889808 132889808 A G GPR107 Missense_Mutation p.K516R 0.81 tolerated(0.23) benign(0.139) TCGA-HN-A2NL-01 9 138395775 138395775 C T MRPS2 Silent p.P229P 0.91 TCGA-HN-A2NL-01 9 77435343 77435343 C G TRPM6 Silent p.G337G 0.35 TCGA-HN-A2NL-01 X 100087875 100087875 G T CSTF2 Missense_Mutation p.R395M 0.59 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-HN-A2NL-01 X 101628073 101628073 C T NXF2B Intron 0.22 TCGA-HN-A2NL-01 X 106171891 106171891 C T CLDN2 Missense_Mutation p.R145W 0.40 deleterious(0.03) probably_damaging(0.967) TCGA-HN-A2NL-01 X 47327014 47327014 C T ZNF41 5'UTR 0.38 TCGA-HN-A2NL-01 X 54956593 54956593 A T TRO Missense_Mutation p.S1146C 0.39 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HN-A2OB-01 11 14281248 14281248 G A RP11-21L19.1 3'Flank 0.13 TCGA-HN-A2OB-01 11 61582572 61582572 G A FADS1 Intron 0.28 TCGA-HN-A2OB-01 11 6191379 6191379 G A OR52B2 Missense_Mutation p.P60S 0.15 deleterious(0.01) possibly_damaging(0.539) TCGA-HN-A2OB-01 12 52201229 52201229 C T SCN8A 3'UTR 0.36 TCGA-HN-A2OB-01 17 39975615 39975615 A G FKBP10 Missense_Mutation p.N294S 0.06 tolerated(0.06) possibly_damaging(0.731) TCGA-HN-A2OB-01 17 46689812 46689813 - C HOXB8 3'UTR 0.15 TCGA-HN-A2OB-01 17 59067441 59067441 G C BCAS3 Missense_Mutation p.R444P 0.08 deleterious(0) possibly_damaging(0.868) TCGA-HN-A2OB-01 17 7217872 7217875 CTTC - GPS2 Frame_Shift_Del p.E46Nfs*16 0.10 TCGA-HN-A2OB-01 19 9297079 9297080 - T OR7D2 Frame_Shift_Ins p.P210Sfs*126 0.20 TCGA-HN-A2OB-01 1 11116774 11116774 G A SRM Missense_Mutation p.A141V 0.21 deleterious(0) probably_damaging(0.99) TCGA-HN-A2OB-01 1 119466114 119466114 G A TBX15 Missense_Mutation p.T163M 0.06 deleterious(0) probably_damaging(0.934) TCGA-HN-A2OB-01 22 37397916 37397916 C G TEX33 Missense_Mutation p.G151R 0.06 deleterious(0.04) probably_damaging(0.979) TCGA-HN-A2OB-01 22 37397983 37397983 C T TEX33 Silent p.Q128Q 0.09 TCGA-HN-A2OB-01 3 112324500 112324500 C T CCDC80 Missense_Mutation p.G873R 0.06 deleterious(0) probably_damaging(1) TCGA-HN-A2OB-01 3 141497439 141497439 G A GRK7 Missense_Mutation p.A105T 0.06 tolerated(0.2) benign(0.013) TCGA-HN-A2OB-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-HN-A2OB-01 3 52440862 52440862 G C BAP1 Missense_Mutation p.I214M 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-HN-A2OB-01 4 3221994 3221994 A C HTT Missense_Mutation p.K2443T 0.24 probably_damaging(0.949) TCGA-HN-A2OB-01 7 14187992 14187992 C T DGKB 3'UTR 0.16 TCGA-HN-A2OB-01 8 42729139 42729139 G C RNF170 Missense_Mutation p.Q50E 0.14 tolerated(0.19) benign(0.031) TCGA-HN-A2OB-01 X 119760370 119760370 A T C1GALT1C1 Missense_Mutation p.S218T 0.11 tolerated(0.07) benign(0.182) TCGA-HN-A2OB-01 X 3240312 3240312 C T MXRA5 Silent p.P1138P 0.22 TCGA-JL-A3YX-01 11 108238433 108238433 T G ATM 3'UTR 0.26 TCGA-JL-A3YX-01 11 128556717 128556717 C A RP11-744N12.3 RNA 0.33 TCGA-JL-A3YX-01 11 63137555 63137555 C T SLC22A9 Silent p.H9H 0.16 TCGA-JL-A3YX-01 12 122967992 122967992 C T ZCCHC8 Intron 0.44 TCGA-JL-A3YX-01 12 31256794 31256794 C T DDX11 Missense_Mutation p.R914C 0.39 deleterious_low_confidence(0.01) benign(0.095) TCGA-JL-A3YX-01 12 94763654 94763654 G A CCDC41 Intron 0.53 TCGA-JL-A3YX-01 14 105717243 105717243 C G BTBD6 3'UTR 0.32 TCGA-JL-A3YX-01 15 78474920 78474920 T C ACSBG1 Missense_Mutation p.E261G 0.39 deleterious(0) possibly_damaging(0.744) TCGA-JL-A3YX-01 16 18879677 18879677 C A SMG1 Splice_Site p.X1011_splice 0.48 TCGA-JL-A3YX-01 16 31098175 31098175 G A RP11-196G11.1 3'Flank 0.19 TCGA-JL-A3YX-01 16 3714413 3714413 G A TRAP1 Silent p.S477S 0.56 TCGA-JL-A3YX-01 16 9858563 9858563 G A GRIN2A Silent p.N946N 0.08 TCGA-JL-A3YX-01 17 39784163 39784163 C T KRT17 5'Flank 0.38 TCGA-JL-A3YX-01 17 41570357 41570357 A T DHX8 Missense_Mutation p.K271I 0.46 tolerated(0.12) benign(0.411) TCGA-JL-A3YX-01 17 57165759 57165759 G C TRIM37 Silent p.L58L 0.40 TCGA-JL-A3YX-01 17 72920959 72920959 C A OTOP2 Missense_Mutation p.L78I 0.06 tolerated(1) benign(0.025) TCGA-JL-A3YX-01 17 73201834 73201834 C T NUP85 5'UTR 0.44 TCGA-JL-A3YX-01 17 76989950 76989950 G T CANT1 Missense_Mutation p.F296L 0.57 deleterious(0.02) benign(0.145) TCGA-JL-A3YX-01 17 79827427 79827427 C T ARHGDIA Missense_Mutation p.D89N 0.47 deleterious(0.03) benign(0.035) TCGA-JL-A3YX-01 18 8394540 8394540 G C PTPRM Missense_Mutation p.Q1425H 0.40 tolerated(0.3) probably_damaging(0.99) TCGA-JL-A3YX-01 19 12740092 12740092 G A ZNF791 3'UTR 0.69 TCGA-JL-A3YX-01 19 13941397 13941397 G A ZSWIM4 Missense_Mutation p.A835T 0.10 tolerated(0.05) unknown(0) TCGA-JL-A3YX-01 19 39220426 39220426 G A ACTN4 3'UTR 0.42 TCGA-JL-A3YX-01 19 7676700 7676700 G A CAMSAP3 Missense_Mutation p.A468T 0.23 tolerated(0.52) benign(0.102) TCGA-JL-A3YX-01 1 153391804 153391804 C T S100A7A 3'UTR 0.23 TCGA-JL-A3YX-01 1 229790001 229790001 A G URB2 Missense_Mutation p.I1415V 0.15 tolerated(0.12) benign(0) TCGA-JL-A3YX-01 1 47183839 47183839 G A EFCAB14 5'UTR 0.26 TCGA-JL-A3YX-01 1 79002484 79002484 G A PTGFR 3'UTR 0.47 TCGA-JL-A3YX-01 21 32007597 32007597 C T KRTAP20-2 Silent p.S5S 0.24 TCGA-JL-A3YX-01 21 46875443 46875443 C G COL18A1 5'UTR 0.48 TCGA-JL-A3YX-01 2 43452870 43452870 G A ZFP36L2 Missense_Mutation p.L25F 0.26 tolerated(0.61) possibly_damaging(0.717) TCGA-JL-A3YX-01 2 70780376 70780376 C T TGFA Intron 0.30 TCGA-JL-A3YX-01 2 87205014 87205014 C G RGPD1 Missense_Mutation p.S800C 0.19 deleterious(0.01) benign(0) TCGA-JL-A3YX-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.56 deleterious(0.04) probably_damaging(0.96) TCGA-JL-A3YX-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.47 tolerated(0.36) benign(0.4) TCGA-JL-A3YX-01 3 196434521 196434523 CTT - CEP19 In_Frame_Del p.K135del 0.16 TCGA-JL-A3YX-01 4 26756725 26756725 G A TBC1D19 3'UTR 0.22 TCGA-JL-A3YX-01 5 137727946 137727946 G A KDM3B Silent p.L875L 0.29 TCGA-JL-A3YX-01 5 140176058 140176058 G A PCDHA2 Silent p.A503A 0.04 TCGA-JL-A3YX-01 5 143191757 143191757 C T HMHB1 5'UTR 0.46 TCGA-JL-A3YX-01 5 147506562 147506562 G T SPINK5 Nonsense_Mutation p.E992* 0.26 TCGA-JL-A3YX-01 5 56168489 56168490 AT - MAP3K1 Frame_Shift_Del p.N482Kfs*10 0.29 TCGA-JL-A3YX-01 5 56181807 56181807 C G MAP3K1 Nonsense_Mutation p.S1344* 0.32 TCGA-JL-A3YX-01 5 76933023 76933023 G A OTP Missense_Mutation p.R24W 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-JL-A3YX-01 6 30615302 30615302 G A C6orf136 Silent p.L98L 0.35 TCGA-JL-A3YX-01 7 104654714 104654714 C T KMT2E 5'UTR 0.39 TCGA-JL-A3YX-01 7 43830845 43830845 T C BLVRA Intron 0.35 TCGA-JL-A3YX-01 7 7561589 7561589 C A COL28A1 Nonsense_Mutation p.E236* 0.38 TCGA-JL-A3YX-01 9 128061327 128061327 C T GAPVD1 Missense_Mutation p.R43C 0.43 deleterious(0) possibly_damaging(0.785) TCGA-JL-A3YX-01 X 53223508 53223509 CT - KDM5C Frame_Shift_Del p.R1284Gfs*15 0.30 TCGA-JL-A3YX-01 X 53439044 53439046 CTT - SMC1A In_Frame_Del p.K338del 0.34 TCGA-JL-A3YX-01 X 73961059 73961059 T A KIAA2022 Missense_Mutation p.K1111N 0.34 tolerated(0.26) benign(0.059) TCGA-JL-A3YX-01 X 79947371 79947371 G A BRWD3 Silent p.D1144D 0.28 TCGA-LD-A66U-01 10 86273903 86273903 C T CCSER2 3'UTR 0.26 TCGA-LD-A66U-01 10 98363775 98363775 G A PIK3AP1 Silent p.S734S 0.16 TCGA-LD-A66U-01 11 126294677 126294677 T A KIRREL3 Missense_Mutation p.Q712L 0.41 tolerated(0.05) probably_damaging(0.966) TCGA-LD-A66U-01 11 1272018 1272018 G A MUC5B Silent p.T4636T 0.11 TCGA-LD-A66U-01 11 56185336 56185336 C T OR5R1 Missense_Mutation p.A125T 0.17 deleterious(0) probably_damaging(0.998) TCGA-LD-A66U-01 11 63526127 63526128 - T RTN3 3'UTR 0.16 TCGA-LD-A66U-01 12 52886929 52886929 C T KRT6A Missense_Mutation p.R15H 0.11 tolerated(0.28) unknown(0) TCGA-LD-A66U-01 12 69107556 69107556 G A NUP107 Missense_Mutation p.V313I 0.14 tolerated(0.93) benign(0.001) TCGA-LD-A66U-01 14 23743838 23743838 C T HOMEZ 3'UTR 0.50 TCGA-LD-A66U-01 14 89123770 89123770 C A EML5 Missense_Mutation p.M1318I 0.26 deleterious(0.03) benign(0.132) TCGA-LD-A66U-01 16 28509622 28509622 G - APOBR Frame_Shift_Del p.R1059Sfs*25 0.15 TCGA-LD-A66U-01 16 68857531 68857531 T G CDH1 Splice_Site p.X722_splice 0.19 TCGA-LD-A66U-01 17 74388100 74388100 G A UBE2O Missense_Mutation p.A1014V 0.10 tolerated(0.07) possibly_damaging(0.635) TCGA-LD-A66U-01 17 74388101 74388101 C A UBE2O Missense_Mutation p.A1014S 0.10 tolerated(0.34) possibly_damaging(0.534) TCGA-LD-A66U-01 18 18547759 18547759 T C ROCK1 Missense_Mutation p.N1049S 0.08 tolerated(0.17) benign(0.049) TCGA-LD-A66U-01 18 77221366 77221366 G A NFATC1 Silent p.P640P 0.05 TCGA-LD-A66U-01 19 55019334 55019334 G A LAIR2 Missense_Mutation p.R100H 0.15 tolerated(0.38) benign(0.036) TCGA-LD-A66U-01 1 233121888 233121888 C T PCNXL2 Missense_Mutation p.V2064I 0.09 deleterious(0.01) possibly_damaging(0.707) TCGA-LD-A66U-01 1 248309134 248309134 G A OR2M5 Missense_Mutation p.G229R 0.46 tolerated(1) benign(0.114) TCGA-LD-A66U-01 1 35259955 35259955 C T GJA4 Silent p.D47D 0.17 TCGA-LD-A66U-01 1 45960656 45960656 G A CCDC163P 3'Flank 0.36 TCGA-LD-A66U-01 1 62330222 62330222 C G INADL Missense_Mutation p.P918A 0.12 tolerated(0.17) benign(0.001) TCGA-LD-A66U-01 20 2443223 2443223 A C SNRPB Intron 0.21 TCGA-LD-A66U-01 20 25273240 25273240 A G PYGB Missense_Mutation p.D723G 0.16 tolerated(0.06) benign(0.081) TCGA-LD-A66U-01 20 2778878 2778878 G A CPXM1 Silent p.A170A 0.39 TCGA-LD-A66U-01 20 49369265 49369265 C A PARD6B 3'UTR 0.08 TCGA-LD-A66U-01 20 60886318 60886318 G A LAMA5 Silent p.L3330L 0.09 TCGA-LD-A66U-01 22 26219504 26219504 G A MYO18B Missense_Mutation p.A852T 0.08 deleterious(0) probably_damaging(1) TCGA-LD-A66U-01 2 166164373 166164373 C A SCN2A Silent p.L134L 0.09 TCGA-LD-A66U-01 2 240961628 240961628 C T NDUFA10 Missense_Mutation p.G69R 0.15 deleterious(0) probably_damaging(1) TCGA-LD-A66U-01 2 44508543 44508543 G A SLC3A1 Missense_Mutation p.D210N 0.11 deleterious(0) probably_damaging(1) TCGA-LD-A66U-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-LD-A66U-01 3 18390240 18390240 A T SATB1 3'UTR 0.12 TCGA-LD-A66U-01 3 38359693 38359693 A G SLC22A14 Missense_Mutation p.K580E 0.08 tolerated(1) benign(0.024) TCGA-LD-A66U-01 3 52392695 52392695 G A DNAH1 Missense_Mutation p.R1403H 0.15 benign(0.005) TCGA-LD-A66U-01 3 52858530 52858530 A G ITIH4 Missense_Mutation p.F310L 0.13 tolerated(0.2) probably_damaging(0.99) TCGA-LD-A66U-01 4 2252922 2252922 G A MXD4 Nonsense_Mutation p.Q121* 0.05 TCGA-LD-A66U-01 4 5966770 5966770 G A C4orf50 Missense_Mutation p.A661V 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-LD-A66U-01 5 135391498 135391498 C A TGFBI Missense_Mutation p.R514S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-LD-A66U-01 5 42721726 42721726 A G GHR 3'UTR 0.35 TCGA-LD-A66U-01 5 98238619 98238619 C T CHD1 Missense_Mutation p.R141K 0.26 tolerated_low_confidence(0.51) benign(0.067) TCGA-LD-A66U-01 6 101099500 101099500 G A ASCC3 Missense_Mutation p.A1004V 0.25 tolerated(0.09) possibly_damaging(0.665) TCGA-LD-A66U-01 6 36104465 36104465 C G MAPK13 Missense_Mutation p.D176E 0.05 tolerated(0.22) probably_damaging(0.989) TCGA-LD-A66U-01 7 148878235 148878235 G A ZNF398 3'Flank 0.18 TCGA-LD-A66U-01 9 130457377 130457377 A G STXBP1 3'Flank 0.19 TCGA-LD-A66U-01 9 136672422 136672423 - A VAV2 Frame_Shift_Ins p.L232Afs*12 0.24 TCGA-LD-A66U-01 X 3242877 3242877 A C MXRA5 Silent p.P283P 0.23 TCGA-LD-A74U-01 10 101439600 101439600 C T ENTPD7 Silent p.L172L 0.17 TCGA-LD-A74U-01 10 101604178 101604178 C T ABCC2 Silent p.L1315L 0.23 TCGA-LD-A74U-01 10 121212770 121212770 G C GRK5 Missense_Mutation p.Q552H 0.21 tolerated(0.62) benign(0.001) TCGA-LD-A74U-01 10 12238197 12238197 G A CDC123 5'UTR 0.22 TCGA-LD-A74U-01 10 134980925 134980925 G C KNDC1 Missense_Mutation p.R48P 0.13 tolerated(0.06) benign(0.007) TCGA-LD-A74U-01 10 23290958 23290958 G A ARMC3 Silent p.L512L 0.23 TCGA-LD-A74U-01 10 32800550 32800550 C - CCDC7 Intron 0.12 TCGA-LD-A74U-01 10 50098741 50098741 G A WDFY4 Missense_Mutation p.D2429N 0.18 deleterious(0) benign(0.441) TCGA-LD-A74U-01 10 50177126 50177126 C G WDFY4 Missense_Mutation p.L2868V 0.28 tolerated_low_confidence(0.37) benign(0.023) TCGA-LD-A74U-01 10 51994210 51994210 G C ASAH2 Missense_Mutation p.Q264E 0.52 tolerated(0.28) benign(0.014) TCGA-LD-A74U-01 10 53457842 53457842 G A CSTF2T Nonsense_Mutation p.Q490* 0.10 TCGA-LD-A74U-01 10 53458349 53458349 G A CSTF2T Missense_Mutation p.P321S 0.15 tolerated(0.26) benign(0) TCGA-LD-A74U-01 10 53458536 53458536 G C CSTF2T Missense_Mutation p.I258M 0.21 tolerated(1) probably_damaging(0.948) TCGA-LD-A74U-01 10 97741838 97741838 C G RP11-248J23.6 Missense_Mutation p.P348A 0.19 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 11 111746060 111746060 C T FDXACB1 Silent p.V487V 0.11 TCGA-LD-A74U-01 11 11974386 11974386 G C USP47 Missense_Mutation p.E1160Q 0.13 deleterious(0.04) probably_damaging(0.939) TCGA-LD-A74U-01 11 125299899 125299899 G C PKNOX2 Missense_Mutation p.D352H 0.10 deleterious(0) probably_damaging(0.997) TCGA-LD-A74U-01 11 125442366 125442366 G T EI24 5'UTR 0.18 TCGA-LD-A74U-01 11 1618666 1618666 G C KRTAP5-2 3'UTR 0.22 TCGA-LD-A74U-01 11 2161920 2161920 G A IGF2 Intron 0.16 TCGA-LD-A74U-01 11 34139964 34139964 G A NAT10 Missense_Mutation p.D232N 0.24 tolerated(0.13) benign(0.002) TCGA-LD-A74U-01 11 4703169 4703169 G C OR51E2 Nonsense_Mutation p.S258* 0.13 TCGA-LD-A74U-01 11 57256790 57256790 G A SLC43A1 Silent p.F423F 0.27 TCGA-LD-A74U-01 11 62290557 62290557 C G AHNAK Missense_Mutation p.E3778Q 0.15 benign(0.015) TCGA-LD-A74U-01 11 63258468 63258468 G A HRASLS5 Silent p.L13L 0.20 TCGA-LD-A74U-01 11 63764654 63764654 G A OTUB1 Missense_Mutation p.E186K 0.11 tolerated(0.18) benign(0.124) TCGA-LD-A74U-01 11 65029740 65029740 C T POLA2 5'UTR 0.24 TCGA-LD-A74U-01 11 65684721 65684721 C T C11orf68 3'UTR 0.24 TCGA-LD-A74U-01 11 66026210 66026210 G A KLC2 Missense_Mutation p.E49K 0.12 tolerated(0.24) benign(0.012) TCGA-LD-A74U-01 11 66130864 66130864 G A RP11-867G23.8 Missense_Mutation p.G38E 0.12 unknown(0) TCGA-LD-A74U-01 11 66191346 66191346 G C NPAS4 Missense_Mutation p.E329Q 0.10 deleterious(0) probably_damaging(0.987) TCGA-LD-A74U-01 11 6630375 6630375 T G ILK Missense_Mutation p.N202K 0.20 tolerated(0.11) benign(0.403) TCGA-LD-A74U-01 11 67163796 67163796 C T RAD9A Missense_Mutation p.S266L 0.31 tolerated(0.19) benign(0.008) TCGA-LD-A74U-01 11 67259380 67259380 T C PITPNM1 3'UTR 0.19 TCGA-LD-A74U-01 11 67262635 67262635 G A PITPNM1 Silent p.L848L 0.17 TCGA-LD-A74U-01 11 73387136 73387136 C T RAB6A 3'UTR 0.05 TCGA-LD-A74U-01 11 76156159 76156159 G A C11orf30 5'Flank 0.09 TCGA-LD-A74U-01 11 8060420 8060420 G C TUB 5'UTR 0.21 TCGA-LD-A74U-01 11 82976947 82976947 C T CCDC90B Silent p.L223L 0.24 TCGA-LD-A74U-01 12 117685234 117685234 C T NOS1 Silent p.E948E 0.18 TCGA-LD-A74U-01 12 13256591 13256591 G A GSG1 5'Flank 0.25 TCGA-LD-A74U-01 12 132681618 132681618 C T GALNT9 3'UTR 0.35 TCGA-LD-A74U-01 12 14613695 14613695 C T ATF7IP Nonsense_Mutation p.Q809* 0.23 TCGA-LD-A74U-01 12 15661681 15661681 G C PTPRO Missense_Mutation p.E482Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-LD-A74U-01 12 1742067 1742067 G A WNT5B Silent p.Q108Q 0.22 TCGA-LD-A74U-01 12 22215297 22215297 C T CMAS Missense_Mutation p.S348L 0.24 tolerated(0.24) benign(0.001) TCGA-LD-A74U-01 12 41337909 41337909 G C CNTN1 Missense_Mutation p.W540C 0.14 deleterious(0) probably_damaging(0.997) TCGA-LD-A74U-01 12 43896055 43896055 G A ADAMTS20 Missense_Mutation p.S256L 0.19 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 12 4488683 4488683 G A FGF23 Silent p.L22L 0.18 TCGA-LD-A74U-01 12 57994196 57994196 G A PIP4K2C Silent p.L263L 0.11 TCGA-LD-A74U-01 12 57994690 57994690 G A PIP4K2C Missense_Mutation p.E304K 0.32 tolerated(0.33) possibly_damaging(0.755) TCGA-LD-A74U-01 12 57995459 57995459 A T PIP4K2C 3'UTR 0.24 TCGA-LD-A74U-01 12 64814203 64814203 G C XPOT Missense_Mutation p.E249Q 0.17 tolerated(0.05) probably_damaging(0.969) TCGA-LD-A74U-01 12 6561522 6561522 T A TAPBPL Intron 0.28 TCGA-LD-A74U-01 12 6632145 6632145 C T NCAPD2 Silent p.L702L 0.09 TCGA-LD-A74U-01 12 66359055 66359055 T A HMGA2 3'UTR 0.19 TCGA-LD-A74U-01 12 66638348 66638348 C T IRAK3 Nonsense_Mutation p.Q324* 0.15 TCGA-LD-A74U-01 12 66638985 66638985 C G IRAK3 Missense_Mutation p.F419L 0.17 tolerated(1) benign(0.324) TCGA-LD-A74U-01 12 69663301 69663301 G C CPSF6 3'UTR 0.21 TCGA-LD-A74U-01 12 8023634 8023634 G A SLC2A14 5'UTR 0.10 TCGA-LD-A74U-01 12 95907496 95907496 G A METAP2 Missense_Mutation p.R418K 0.29 deleterious(0.04) possibly_damaging(0.905) TCGA-LD-A74U-01 12 990876 990876 C T WNK1 Nonsense_Mutation p.Q1044* 0.26 TCGA-LD-A74U-01 13 32969068 32969068 G C BRCA2 Missense_Mutation p.E3167Q 0.26 tolerated(0.08) possibly_damaging(0.487) TCGA-LD-A74U-01 13 92408558 92408558 C G GPC5 Missense_Mutation p.I388M 0.31 tolerated(0.1) possibly_damaging(0.507) TCGA-LD-A74U-01 14 104518487 104518487 C T TDRD9 3'UTR 0.17 TCGA-LD-A74U-01 14 21109523 21109523 C T OR6S1 Missense_Mutation p.G110R 0.17 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 14 36039942 36039942 G A RALGAPA1 Silent p.F1953F 0.24 TCGA-LD-A74U-01 14 57101621 57101621 G C TMEM260 Missense_Mutation p.D577H 0.12 tolerated(0.31) benign(0.004) TCGA-LD-A74U-01 14 59112269 59112269 G A DACT1 Missense_Mutation p.E310K 0.13 tolerated(0.06) possibly_damaging(0.615) TCGA-LD-A74U-01 14 60976414 60976414 G A SIX6 Missense_Mutation p.E100K 0.13 deleterious(0) probably_damaging(0.984) TCGA-LD-A74U-01 14 62541924 62541924 C T SYT16 Missense_Mutation p.H270Y 0.23 tolerated(0.13) benign(0.162) TCGA-LD-A74U-01 14 74533476 74533476 G A ALDH6A1 Nonsense_Mutation p.R386* 0.17 TCGA-LD-A74U-01 14 88729739 88729739 G C KCNK10 Missense_Mutation p.T70S 0.20 tolerated(0.47) benign(0.005) TCGA-LD-A74U-01 14 89163193 89163193 G C EML5 Nonsense_Mutation p.S781* 0.20 TCGA-LD-A74U-01 14 92499578 92499578 C T TRIP11 Silent p.R53R 0.04 TCGA-LD-A74U-01 14 94084619 94084619 C T UNC79 Missense_Mutation p.H1259Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-LD-A74U-01 15 25219988 25219988 G C SNRPN Intron 0.21 TCGA-LD-A74U-01 15 38645526 38645526 C G SPRED1 3'UTR 0.11 TCGA-LD-A74U-01 15 40557115 40557115 C T PAK6 Silent p.I43I 0.08 TCGA-LD-A74U-01 15 40915103 40915103 G C CASC5 Missense_Mutation p.E907Q 0.10 deleterious(0.03) possibly_damaging(0.88) TCGA-LD-A74U-01 15 73614569 73614569 G A HCN4 3'UTR 0.15 TCGA-LD-A74U-01 15 74529057 74529057 G T CCDC33 5'UTR 0.31 TCGA-LD-A74U-01 15 89074383 89074383 C T DET1 Missense_Mutation p.R196Q 0.29 tolerated(0.2) benign(0.284) TCGA-LD-A74U-01 15 99507552 99507552 G A IGF1R 3'UTR 0.18 TCGA-LD-A74U-01 16 15224971 15224971 G A RP11-1186N24.5 RNA 0.05 TCGA-LD-A74U-01 16 2290049 2290049 G A ECI1 Silent p.F280F 0.09 TCGA-LD-A74U-01 16 29994124 29994124 G A TAOK2 Missense_Mutation p.V301M 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-LD-A74U-01 16 30077131 30077131 C T ALDOA Intron 0.19 TCGA-LD-A74U-01 16 30102397 30102397 C T TBX6 Missense_Mutation p.E40K 0.05 deleterious_low_confidence(0) benign(0.021) TCGA-LD-A74U-01 16 30485618 30485618 G A ITGAL Missense_Mutation p.G55R 0.21 tolerated(0.35) benign(0.005) TCGA-LD-A74U-01 16 3073236 3073236 G C HCFC1R1 Silent p.L93L 0.12 TCGA-LD-A74U-01 16 4433225 4433225 C T VASN 3'UTR 0.08 TCGA-LD-A74U-01 16 5040800 5040800 C T SEC14L5 Silent p.F126F 0.07 TCGA-LD-A74U-01 16 50766138 50766138 G A NOD2 3'UTR 0.27 TCGA-LD-A74U-01 16 68844123 68844124 - T CDH1 Frame_Shift_Ins p.N238* 0.17 TCGA-LD-A74U-01 16 81204589 81204589 C G PKD1L2 3'Flank 0.24 TCGA-LD-A74U-01 16 85704691 85704691 C T GSE1 Missense_Mutation p.S1169F 0.26 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 16 9934956 9934956 G A GRIN2A Missense_Mutation p.S445L 0.08 tolerated(0.07) benign(0.008) TCGA-LD-A74U-01 17 11998985 11998985 C T MAP2K4 Nonsense_Mutation p.Q163* 0.13 TCGA-LD-A74U-01 17 18315086 18315086 C T RP1-37N7.3 RNA 0.12 TCGA-LD-A74U-01 17 19316700 19316700 C G RNF112 Missense_Mutation p.F232L 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-LD-A74U-01 17 21321240 21321240 G C KCNJ12 3'UTR 0.09 TCGA-LD-A74U-01 17 27589641 27589641 G A NUFIP2 3'UTR 0.29 TCGA-LD-A74U-01 17 29663722 29663722 C G NF1 Missense_Mutation p.L2073V 0.23 tolerated(0.19) probably_damaging(0.952) TCGA-LD-A74U-01 17 36700205 36700205 C G SRCIN1 Splice_Site p.X1091_splice 0.18 TCGA-LD-A74U-01 17 37427084 37427084 G A FBXL20 Nonsense_Mutation p.Q285* 0.21 TCGA-LD-A74U-01 17 39925769 39925769 G A JUP Silent p.L123L 0.29 TCGA-LD-A74U-01 17 57958304 57958304 G A TUBD1 Missense_Mutation p.S163L 0.21 deleterious(0) benign(0.284) TCGA-LD-A74U-01 17 7417718 7417718 C T POLR2A 3'UTR 0.37 TCGA-LD-A74U-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.29 deleterious(0.04) possibly_damaging(0.83) TCGA-LD-A74U-01 17 7752206 7752206 C T KDM6B Missense_Mutation p.S867L 0.23 possibly_damaging(0.519) TCGA-LD-A74U-01 17 80356079 80356079 C T OGFOD3 Silent p.P272P 0.12 TCGA-LD-A74U-01 18 33775293 33775293 C T MOCOS Silent p.L72L 0.17 TCGA-LD-A74U-01 19 12637879 12637879 G C ZNF564 Missense_Mutation p.S348C 0.29 tolerated(0.2) benign(0.062) TCGA-LD-A74U-01 19 12638538 12638538 G C ZNF564 Missense_Mutation p.H128Q 0.29 tolerated(0.13) benign(0.345) TCGA-LD-A74U-01 19 16512943 16512943 C G EPS15L1 Intron 0.13 TCGA-LD-A74U-01 19 1790809 1790809 G A ATP8B3 Silent p.F775F 0.13 TCGA-LD-A74U-01 19 18120419 18120419 C T ARRDC2 Missense_Mutation p.R170W 0.12 deleterious(0) possibly_damaging(0.556) TCGA-LD-A74U-01 19 19216444 19216444 C T SLC25A42 Silent p.T96T 0.17 TCGA-LD-A74U-01 19 21120118 21120118 G C ZNF85 Intron 0.30 TCGA-LD-A74U-01 19 33991880 33991880 C T PEPD Silent p.E119E 0.12 TCGA-LD-A74U-01 19 36037609 36037609 G A TMEM147 Silent p.L81L 0.15 TCGA-LD-A74U-01 19 36883971 36883971 C T ZFP82 Missense_Mutation p.C424Y 0.17 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 19 3785128 3785128 C T MATK Intron 0.05 TCGA-LD-A74U-01 19 44739277 44739277 G A ZNF227 Missense_Mutation p.G232S 0.09 tolerated(0.72) benign(0.048) TCGA-LD-A74U-01 19 44791508 44791508 G A ZNF235 Nonsense_Mutation p.Q694* 0.10 TCGA-LD-A74U-01 19 46190747 46190747 C T SNRPD2 3'UTR 0.11 TCGA-LD-A74U-01 19 46307638 46307638 C T RSPH6A Missense_Mutation p.E509K 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-LD-A74U-01 19 4695396 4695396 C G DPP9 Missense_Mutation p.W449C 0.22 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 19 48025192 48025192 G C ZNF541 Missense_Mutation p.I1229M 0.14 tolerated(0.06) benign(0.091) TCGA-LD-A74U-01 19 5039901 5039901 G A KDM4B Missense_Mutation p.V66M 0.18 benign(0.011) TCGA-LD-A74U-01 19 51670806 51670806 C T CTD-3187F8.14 Intron 0.32 TCGA-LD-A74U-01 19 53794701 53794701 G A BIRC8 5'UTR 0.16 TCGA-LD-A74U-01 19 5455910 5455910 C G ZNRF4 Silent p.V136V 0.11 TCGA-LD-A74U-01 19 5456099 5456099 C T ZNRF4 Silent p.V199V 0.17 TCGA-LD-A74U-01 19 55331329 55331329 G C KIR3DL1 Missense_Mutation p.D173H 0.12 tolerated(0.24) benign(0.055) TCGA-LD-A74U-01 19 55386812 55386812 G A FCAR Missense_Mutation p.A21T 0.17 tolerated(0.05) probably_damaging(0.921) TCGA-LD-A74U-01 19 56320706 56320706 C T NLRP11 Missense_Mutation p.E424K 0.12 tolerated(0.33) benign(0.027) TCGA-LD-A74U-01 19 57922748 57922748 G A ZNF17 5'UTR 0.14 TCGA-LD-A74U-01 19 58858292 58858292 G A A1BG 3'UTR 0.19 TCGA-LD-A74U-01 19 7683138 7683138 C T CAMSAP3 3'UTR 0.22 TCGA-LD-A74U-01 1 10363799 10363799 C G KIF1B Intron 0.34 TCGA-LD-A74U-01 1 110129470 110129470 G A GNAI3 Silent p.R280R 0.34 TCGA-LD-A74U-01 1 112042589 112042589 C T ADORA3 Intron 0.19 TCGA-LD-A74U-01 1 117618158 117618158 G T TTF2 Nonsense_Mutation p.E318* 0.18 TCGA-LD-A74U-01 1 149783846 149783846 G A HIST2H2BF Silent p.P11P 0.19 TCGA-LD-A74U-01 1 151337399 151337399 C T SELENBP1 Intron 0.19 TCGA-LD-A74U-01 1 151671306 151671306 C T SNX27 3'UTR 0.13 TCGA-LD-A74U-01 1 152382378 152382378 C T CRNN Missense_Mutation p.E394K 0.15 deleterious(0.04) benign(0.086) TCGA-LD-A74U-01 1 152733079 152733079 C G KPRP Missense_Mutation p.P339A 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-LD-A74U-01 1 153954452 153954452 C G RAB13 3'UTR 0.20 TCGA-LD-A74U-01 1 155733324 155733324 G A GON4L Missense_Mutation p.S1502F 0.05 deleterious(0) probably_damaging(0.919) TCGA-LD-A74U-01 1 156513828 156513828 C T IQGAP3 Silent p.V825V 0.24 TCGA-LD-A74U-01 1 15892600 15892600 C G DNAJC16 Nonsense_Mutation p.S568* 0.35 TCGA-LD-A74U-01 1 159283558 159283558 G A OR10J3 Nonsense_Mutation p.Q298* 0.11 TCGA-LD-A74U-01 1 16259899 16259899 G A SPEN Silent p.E2388E 0.19 TCGA-LD-A74U-01 1 173951942 173951942 C G RC3H1 Missense_Mutation p.E231Q 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-LD-A74U-01 1 177901689 177901689 C T SEC16B Missense_Mutation p.R983Q 0.13 tolerated(0.88) benign(0.002) TCGA-LD-A74U-01 1 181058050 181058050 G C IER5 Missense_Mutation p.K4N 0.05 deleterious(0) probably_damaging(0.953) TCGA-LD-A74U-01 1 183087232 183087232 C G LAMC1 Silent p.L647L 0.17 TCGA-LD-A74U-01 1 193060815 193060815 G A GLRX2 3'Flank 0.17 TCGA-LD-A74U-01 1 19422147 19422147 C G UBR4 Splice_Site p.X4507_splice 0.11 TCGA-LD-A74U-01 1 21503308 21503308 G A EIF4G3 5'UTR 0.05 TCGA-LD-A74U-01 1 216051172 216051172 G A USH2A Missense_Mutation p.P2870L 0.17 probably_damaging(0.985) TCGA-LD-A74U-01 1 235969378 235969378 C T LYST Missense_Mutation p.E1020K 0.11 tolerated_low_confidence(0.18) benign(0.074) TCGA-LD-A74U-01 1 23695989 23695989 G A C1orf213 Missense_Mutation p.E67K 0.25 tolerated_low_confidence(0.14) possibly_damaging(0.486) TCGA-LD-A74U-01 1 243579028 243579028 G A SDCCAG8 Silent p.Q547Q 0.19 TCGA-LD-A74U-01 1 2442119 2442119 C G PANK4 Missense_Mutation p.E646Q 0.20 tolerated(0.14) benign(0.145) TCGA-LD-A74U-01 1 246670585 246670585 G A SMYD3 5'Flank 0.17 TCGA-LD-A74U-01 1 249149617 249149617 C T ZNF692 Missense_Mutation p.G339S 0.15 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 1 29095811 29095811 C T YTHDF2 3'UTR 0.17 TCGA-LD-A74U-01 1 42880390 42880390 G A RIMKLA Silent p.Q307Q 0.15 TCGA-LD-A74U-01 1 47399661 47399661 G C CYP4A11 Silent p.L393L 0.13 TCGA-LD-A74U-01 1 51435860 51435860 G C CDKN2C Intron 0.25 TCGA-LD-A74U-01 1 63001187 63001187 G A DOCK7 Silent p.V1165V 0.15 TCGA-LD-A74U-01 1 70385049 70385049 G A LRRC7 Intron 0.18 TCGA-LD-A74U-01 1 94048298 94048298 G A BCAR3 Missense_Mutation p.P416S 0.14 tolerated(0.16) benign(0.077) TCGA-LD-A74U-01 20 25239870 25239870 C T PYGB Intron 0.23 TCGA-LD-A74U-01 20 31238095 31238095 C T C20orf203 RNA 0.38 TCGA-LD-A74U-01 20 34542970 34542972 TGT - SCAND1 5'UTR 0.25 TCGA-LD-A74U-01 20 40111979 40111979 T A CHD6 Missense_Mutation p.D813V 0.28 deleterious(0) probably_damaging(0.986) TCGA-LD-A74U-01 20 44513385 44513385 C T ZSWIM1 3'UTR 0.18 TCGA-LD-A74U-01 20 44520909 44520909 C T CTSA Intron 0.19 TCGA-LD-A74U-01 20 50768923 50768923 A G ZFP64 Missense_Mutation p.F603S 0.20 deleterious(0) probably_damaging(0.986) TCGA-LD-A74U-01 20 56226665 56226665 C T PMEPA1 3'UTR 0.20 TCGA-LD-A74U-01 20 62373308 62373308 G C SLC2A4RG Missense_Mutation p.D160H 0.03 deleterious(0.01) probably_damaging(0.996) TCGA-LD-A74U-01 20 62612586 62612586 C T PRPF6 5'UTR 0.22 TCGA-LD-A74U-01 20 826381 826381 C T FAM110A 3'UTR 0.21 TCGA-LD-A74U-01 21 19642323 19642323 G C TMPRSS15 Nonsense_Mutation p.S1008* 0.18 TCGA-LD-A74U-01 21 34444127 34444127 G C OLIG1 3'UTR 0.12 TCGA-LD-A74U-01 21 34950736 34950736 C T DONSON Silent p.K526K 0.23 TCGA-LD-A74U-01 21 34955862 34955862 C T DONSON Missense_Mutation p.G299E 0.06 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 21 36193848 36193848 C G RUNX1 Intron 0.12 TCGA-LD-A74U-01 22 24376453 24376453 C G GSTT1 Silent p.L231L 0.18 TCGA-LD-A74U-01 22 38119630 38119630 C A TRIOBP Missense_Mutation p.T356N 0.16 tolerated_low_confidence(0.23) possibly_damaging(0.827) TCGA-LD-A74U-01 22 40721433 40721433 G C TNRC6B 3'UTR 0.25 TCGA-LD-A74U-01 22 41923547 41923547 C T POLR3H 3'UTR 0.19 TCGA-LD-A74U-01 22 44178146 44178146 C T EFCAB6 Missense_Mutation p.R18Q 0.14 tolerated(0.51) benign(0.011) TCGA-LD-A74U-01 22 44322954 44322954 C T PNPLA3 Silent p.L109L 0.15 TCGA-LD-A74U-01 2 109124144 109124144 C T GCC2 3'UTR 0.19 TCGA-LD-A74U-01 2 109383506 109383506 G A RANBP2 Missense_Mutation p.E2171K 0.14 deleterious(0) probably_damaging(0.968) TCGA-LD-A74U-01 2 113993052 113993052 C T PAX8 Missense_Mutation p.G336S 0.05 tolerated(0.17) benign(0.013) TCGA-LD-A74U-01 2 121554913 121554913 C T GLI2 Missense_Mutation p.S6L 0.18 deleterious_low_confidence(0.03) benign(0.002) TCGA-LD-A74U-01 2 136569909 136569909 G A LCT Silent p.F775F 0.25 TCGA-LD-A74U-01 2 170537574 170537574 C G CCDC173 Missense_Mutation p.K79N 0.24 deleterious(0.01) possibly_damaging(0.545) TCGA-LD-A74U-01 2 176794780 176794780 G T KIAA1715 Nonsense_Mutation p.S401* 0.33 TCGA-LD-A74U-01 2 17997916 17997916 C T MSGN1 Missense_Mutation p.S44F 0.13 deleterious(0.02) benign(0.133) TCGA-LD-A74U-01 2 197757070 197757070 G A PGAP1 Silent p.N363N 0.20 TCGA-LD-A74U-01 2 198267359 198267359 C G SF3B1 Missense_Mutation p.K666N 0.15 deleterious(0) probably_damaging(0.992) TCGA-LD-A74U-01 2 20647129 20647129 C T RHOB 5'UTR 0.17 TCGA-LD-A74U-01 2 210887789 210887789 C T KANSL1L Missense_Mutation p.E950K 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.602) TCGA-LD-A74U-01 2 215872496 215872496 G T ABCA12 Missense_Mutation p.F849L 0.17 tolerated(0.43) benign(0.001) TCGA-LD-A74U-01 2 232603843 232603843 C T PDE6D Missense_Mutation p.E36K 0.14 tolerated(0.29) benign(0.023) TCGA-LD-A74U-01 2 29092653 29092653 C G TRMT61B Missense_Mutation p.G164A 0.06 tolerated(0.06) benign(0.043) TCGA-LD-A74U-01 2 31397523 31397523 G A CAPN14 3'Flank 0.14 TCGA-LD-A74U-01 2 37464965 37464965 G A NDUFAF7 Silent p.V121V 0.16 TCGA-LD-A74U-01 2 50850626 50850626 C T NRXN1 Silent p.L353L 0.31 TCGA-LD-A74U-01 2 51254918 51254918 G T NRXN1 Missense_Mutation p.A165E 0.14 tolerated(0.29) benign(0.445) TCGA-LD-A74U-01 2 54001633 54001633 G A CHAC2 Missense_Mutation p.E176K 0.22 tolerated(0.28) benign(0.002) TCGA-LD-A74U-01 2 74601512 74601512 G C DCTN1 Intron 0.22 TCGA-LD-A74U-01 2 74685621 74685621 C T WBP1 5'UTR 0.21 TCGA-LD-A74U-01 2 86434381 86434381 G C MRPL35 Missense_Mutation p.K103N 0.11 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 2 96051601 96051601 C T KCNIP3 3'UTR 0.21 TCGA-LD-A74U-01 2 99013589 99013589 C T CNGA3 Silent p.N652N 0.20 TCGA-LD-A74U-01 3 119121059 119121059 C T ARHGAP31 Missense_Mutation p.S487F 0.36 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 3 124461011 124461011 G A UMPS Missense_Mutation p.E391K 0.11 tolerated(0.15) benign(0.005) TCGA-LD-A74U-01 3 132323959 132323959 G C ACAD11 Missense_Mutation p.S502C 0.17 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 3 151538173 151538173 C G AADAC Missense_Mutation p.L122V 0.14 tolerated(0.09) benign(0.008) TCGA-LD-A74U-01 3 169540300 169540300 G A LRRIQ4 Silent p.E197E 0.20 TCGA-LD-A74U-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.27 tolerated(0.21) possibly_damaging(0.893) TCGA-LD-A74U-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-LD-A74U-01 3 184045482 184045482 A G EIF4G1 Missense_Mutation p.N1264S 0.19 deleterious(0.05) benign(0.009) TCGA-LD-A74U-01 3 186282100 186282100 G A TBCCD1 Missense_Mutation p.L7F 0.12 tolerated(0.7) benign(0.001) TCGA-LD-A74U-01 3 187420189 187420189 G C RP11-211G3.3 5'UTR 0.07 TCGA-LD-A74U-01 3 196556017 196556017 G C PAK2 3'UTR 0.22 TCGA-LD-A74U-01 3 19961373 19961373 C G EFHB Missense_Mutation p.Q316H 0.12 deleterious(0.03) benign(0.017) TCGA-LD-A74U-01 3 33038481 33038481 G C GLB1 3'UTR 0.17 TCGA-LD-A74U-01 3 39307145 39307145 A C CX3CR1 Missense_Mutation p.C318G 0.18 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 3 47651596 47651596 C T SMARCC1 Silent p.L1001L 0.09 TCGA-LD-A74U-01 3 51399405 51399405 G A DOCK3 Missense_Mutation p.E1708K 0.23 deleterious_low_confidence(0.01) benign(0.146) TCGA-LD-A74U-01 3 54661897 54661897 G A CACNA2D3 Silent p.L349L 0.06 TCGA-LD-A74U-01 3 57496533 57496533 G A DNAH12 Silent p.S151S 0.11 TCGA-LD-A74U-01 3 62739340 62739340 G C CADPS Missense_Mutation p.L222V 0.25 deleterious(0) benign(0.364) TCGA-LD-A74U-01 3 65361576 65361576 C G MAGI1 Missense_Mutation p.E1014Q 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-LD-A74U-01 3 9121741 9121741 C T SRGAP3 Missense_Mutation p.E152K 0.23 deleterious(0) probably_damaging(0.987) TCGA-LD-A74U-01 4 102269900 102269900 G C AP001816.1 Silent p.L121L 0.30 TCGA-LD-A74U-01 4 107843235 107843235 C T DKK2 3'UTR 0.06 TCGA-LD-A74U-01 4 110773075 110773075 C T LRIT3 Missense_Mutation p.H178Y 0.27 tolerated(0.15) possibly_damaging(0.775) TCGA-LD-A74U-01 4 122853593 122853593 C G TRPC3 Missense_Mutation p.E274Q 0.19 tolerated(0.16) benign(0.091) TCGA-LD-A74U-01 4 155156508 155156508 C G DCHS2 Missense_Mutation p.G2644A 0.12 deleterious(0.04) benign(0.179) TCGA-LD-A74U-01 4 162680560 162680560 C T FSTL5 Intron 0.26 TCGA-LD-A74U-01 4 187003666 187003666 C G TLR3 Missense_Mutation p.L276V 0.20 deleterious(0.02) possibly_damaging(0.788) TCGA-LD-A74U-01 4 37440453 37440453 G A KIAA1239 Missense_Mutation p.G246E 0.20 tolerated(0.89) benign(0.011) TCGA-LD-A74U-01 4 7043550 7043550 C T CCDC96 Missense_Mutation p.M372I 0.33 tolerated(0.1) benign(0.241) TCGA-LD-A74U-01 5 131528704 131528704 C T P4HA2 Silent p.%3D 0.15 TCGA-LD-A74U-01 5 137028002 137028002 G A KLHL3 Silent p.D166D 0.23 TCGA-LD-A74U-01 5 137759889 137759889 G A KDM3B Silent p.V1366V 0.21 TCGA-LD-A74U-01 5 140262431 140262431 C T PCDHA13 Missense_Mutation p.S193L 0.18 tolerated_low_confidence(0.14) benign(0.064) TCGA-LD-A74U-01 5 140763025 140763025 G A PCDHGA7 Missense_Mutation p.D187N 0.26 tolerated_low_confidence(0.15) benign(0.177) TCGA-LD-A74U-01 5 140855978 140855978 G A PCDHGC3 Missense_Mutation p.G99R 0.23 deleterious(0.04) probably_damaging(0.974) TCGA-LD-A74U-01 5 150870952 150870952 G C SLC36A1 3'UTR 0.20 TCGA-LD-A74U-01 5 154300903 154300903 C T GEMIN5 Missense_Mutation p.G488R 0.20 deleterious(0.03) possibly_damaging(0.703) TCGA-LD-A74U-01 5 156482428 156482428 A G HAVCR1 Missense_Mutation p.F55L 0.25 tolerated(0.12) benign(0.294) TCGA-LD-A74U-01 5 171809101 171809101 G A SH3PXD2B Nonsense_Mutation p.Q114* 0.12 TCGA-LD-A74U-01 5 173473813 173473813 G C NSG2 Missense_Mutation p.E19Q 0.23 tolerated(0.64) benign(0.141) TCGA-LD-A74U-01 5 1882062 1882062 C T IRX4 Missense_Mutation p.E53K 0.15 deleterious(0) possibly_damaging(0.536) TCGA-LD-A74U-01 5 33881309 33881309 G A ADAMTS12 Missense_Mutation p.S135F 0.08 deleterious(0.01) possibly_damaging(0.646) TCGA-LD-A74U-01 5 52194128 52194128 G A ITGA1 Silent p.Q408Q 0.17 TCGA-LD-A74U-01 5 54585131 54585131 C G DHX29 Missense_Mutation p.E345Q 0.18 deleterious(0.01) possibly_damaging(0.46) TCGA-LD-A74U-01 5 61686810 61686810 C T DIMT1 Splice_Site p.X265_splice 0.14 TCGA-LD-A74U-01 5 68485415 68485415 C T CENPH 5'UTR 0.46 TCGA-LD-A74U-01 5 79465239 79465239 C T SERINC5 Missense_Mutation p.E228K 0.18 tolerated(0.11) benign(0.158) TCGA-LD-A74U-01 5 93856319 93856319 G C KIAA0825 Missense_Mutation p.L202V 0.23 deleterious(0) probably_damaging(0.999) TCGA-LD-A74U-01 6 107386458 107386458 G C BEND3 3'UTR 0.04 TCGA-LD-A74U-01 6 126250338 126250338 C T NCOA7 3'UTR 0.18 TCGA-LD-A74U-01 6 127608440 127608440 C G RNF146 Missense_Mutation p.Q228E 0.09 tolerated(0.43) benign(0.043) TCGA-LD-A74U-01 6 136693693 136693693 G A MAP7 Silent p.L296L 0.12 TCGA-LD-A74U-01 6 138413186 138413186 G C PERP Missense_Mutation p.S192C 0.19 deleterious(0) possibly_damaging(0.522) TCGA-LD-A74U-01 6 139308723 139308723 C T REPS1 Missense_Mutation p.G33R 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-LD-A74U-01 6 147054334 147054334 C T ADGB Missense_Mutation p.R867W 0.09 deleterious(0) probably_damaging(0.998) TCGA-LD-A74U-01 6 155764542 155764542 G A NOX3 Silent p.I117I 0.22 TCGA-LD-A74U-01 6 157517446 157517446 G A ARID1B Missense_Mutation p.R1337Q 0.17 probably_damaging(0.996) TCGA-LD-A74U-01 6 161519420 161519420 C G MAP3K4 Missense_Mutation p.S1212C 0.32 tolerated(0.19) benign(0.008) TCGA-LD-A74U-01 6 168708482 168708482 C T DACT2 Missense_Mutation p.R652H 0.36 tolerated(0.16) benign(0.171) TCGA-LD-A74U-01 6 26240664 26240664 G A HIST1H4F Missense_Mutation p.R4K 0.12 tolerated_low_confidence(0.1) benign(0.005) TCGA-LD-A74U-01 6 31797742 31797742 C T HSPA1B 3'UTR 0.18 TCGA-LD-A74U-01 6 32135418 32135418 G A EGFL8 Missense_Mutation p.E274K 0.15 deleterious(0) probably_damaging(0.985) TCGA-LD-A74U-01 6 33288366 33288366 C T DAXX Missense_Mutation p.V348I 0.29 tolerated(1) benign(0.002) TCGA-LD-A74U-01 6 46656881 46656881 G A TDRD6 Missense_Mutation p.R339H 0.16 tolerated(0.14) benign(0.052) TCGA-LD-A74U-01 6 52905948 52905948 C T ICK Silent p.L29L 0.15 TCGA-LD-A74U-01 6 53519679 53519679 C G KLHL31 Missense_Mutation p.G131A 0.11 tolerated(0.28) probably_damaging(1) TCGA-LD-A74U-01 6 70646728 70646728 C G COL19A1 Missense_Mutation p.H267D 0.10 tolerated(0.09) unknown(0) TCGA-LD-A74U-01 6 73904412 73904412 C T KCNQ5 Silent p.L711L 0.17 TCGA-LD-A74U-01 6 76023576 76023576 C T FILIP1 Missense_Mutation p.D658N 0.33 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 6 91226296 91226296 G C MAP3K7 Missense_Mutation p.S582C 0.09 tolerated(0.08) probably_damaging(0.969) TCGA-LD-A74U-01 6 97594557 97594557 G A MMS22L 3'UTR 0.38 TCGA-LD-A74U-01 6 99849136 99849136 G C PNISR Missense_Mutation p.I566M 0.17 tolerated_low_confidence(0.17) benign(0.053) TCGA-LD-A74U-01 7 120906397 120906397 C G CPED1 Silent p.V809V 0.28 TCGA-LD-A74U-01 7 150761451 150761451 G A SLC4A2 Missense_Mutation p.E72K 0.29 deleterious_low_confidence(0.03) benign(0.014) TCGA-LD-A74U-01 7 151970788 151970788 A T KMT2C Splice_Site p.X338_splice 0.03 TCGA-LD-A74U-01 7 21468374 21468374 G A SP4 Silent p.E29E 0.26 TCGA-LD-A74U-01 7 2695785 2695785 C G TTYH3 Silent p.L360L 0.30 TCGA-LD-A74U-01 7 40133846 40133846 C T CDK13 Missense_Mutation p.P1269L 0.26 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-LD-A74U-01 7 47897386 47897386 G A PKD1L1 Silent p.F1469F 0.22 TCGA-LD-A74U-01 7 55466150 55466150 C T LANCL2 Silent p.V119V 0.25 TCGA-LD-A74U-01 7 6461384 6461384 C G DAGLB Missense_Mutation p.E398Q 0.26 tolerated(0.26) benign(0.405) TCGA-LD-A74U-01 7 91746466 91746466 G C CYP51A1 Missense_Mutation p.Q415E 0.16 deleterious(0.01) benign(0.244) TCGA-LD-A74U-01 7 94292882 94292882 G A PEG10 Missense_Mutation p.R5K 0.11 tolerated_low_confidence(0.14) benign(0.002) TCGA-LD-A74U-01 7 97847340 97847340 G A TECPR1 Missense_Mutation p.R1058C 0.26 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 7 98792809 98792809 G A KPNA7 Missense_Mutation p.S146L 0.09 deleterious(0) probably_damaging(1) TCGA-LD-A74U-01 7 99459324 99459324 G A CYP3A43 Missense_Mutation p.R372K 0.19 deleterious(0) probably_damaging(0.935) TCGA-LD-A74U-01 7 99933761 99933761 C T PILRB 5'UTR 0.22 TCGA-LD-A74U-01 8 103324581 103324581 C T UBR5 Missense_Mutation p.D714N 0.18 deleterious(0) probably_damaging(0.98) TCGA-LD-A74U-01 8 106811019 106811019 G A ZFPM2 Silent p.L269L 0.06 TCGA-LD-A74U-01 8 11295594 11295594 C T C8orf12 Missense_Mutation p.S28L 0.09 tolerated_low_confidence(0.13) possibly_damaging(0.514) TCGA-LD-A74U-01 8 12879176 12879176 C G KIAA1456 Missense_Mutation p.L330V 0.13 tolerated(0.52) benign(0.001) TCGA-LD-A74U-01 8 13356644 13356644 C T DLC1 Missense_Mutation p.E313K 0.24 tolerated_low_confidence(0.73) benign(0.002) TCGA-LD-A74U-01 8 145066635 145066635 C G GRINA Silent p.T275T 0.27 TCGA-LD-A74U-01 8 16026354 16026354 C T MSR1 Silent p.K81K 0.12 TCGA-LD-A74U-01 8 22278975 22278975 G A SLC39A14 3'UTR 0.22 TCGA-LD-A74U-01 8 22421809 22421809 G A SORBS3 Missense_Mutation p.R230Q 0.17 tolerated(0.45) benign(0.02) TCGA-LD-A74U-01 8 3265444 3265444 C T CSMD1 Missense_Mutation p.R683K 0.21 benign(0.008) TCGA-LD-A74U-01 8 38277050 38277050 C T FGFR1 Splice_Site p.X459_splice 0.21 TCGA-LD-A74U-01 8 41788200 41788200 A G KAT6A 3'UTR 0.21 TCGA-LD-A74U-01 8 65489088 65489088 G A BHLHE22 5'Flank 0.17 TCGA-LD-A74U-01 8 67542712 67542712 C G VCPIP1 3'UTR 0.25 TCGA-LD-A74U-01 8 91946532 91946532 G A NECAB1 Missense_Mutation p.D232N 0.21 tolerated(0.19) benign(0.15) TCGA-LD-A74U-01 9 107289039 107289039 G A OR13C4 Missense_Mutation p.S151F 0.17 tolerated(0.07) probably_damaging(0.982) TCGA-LD-A74U-01 9 116136283 116136283 C T HDHD3 Missense_Mutation p.E118K 0.22 tolerated(0.84) benign(0.005) TCGA-LD-A74U-01 9 123676560 123676560 C T TRAF1 Missense_Mutation p.E83K 0.24 tolerated(1) benign(0.001) TCGA-LD-A74U-01 9 129982054 129982054 C T RALGPS1 3'UTR 0.17 TCGA-LD-A74U-01 9 129982364 129982364 C A RALGPS1 3'UTR 0.17 TCGA-LD-A74U-01 9 129983277 129983277 C T RALGPS1 3'UTR 0.22 TCGA-LD-A74U-01 9 140137030 140137030 G C TUBB4B Silent p.V120V 0.04 TCGA-LD-A74U-01 9 14087612 14087612 C G NFIB 3'UTR 0.07 TCGA-LD-A74U-01 9 2717849 2717849 C A KCNV2 Missense_Mutation p.S37Y 0.28 tolerated_low_confidence(0.1) possibly_damaging(0.467) TCGA-LD-A74U-01 9 32786434 32786434 C G TMEM215 3'UTR 0.21 TCGA-LD-A74U-01 9 35703996 35703996 C A TLN1 Nonsense_Mutation p.E2075* 0.38 TCGA-LD-A74U-01 9 37746479 37746479 G A FRMPD1 Missense_Mutation p.E1484K 0.18 tolerated(0.16) benign(0.063) TCGA-LD-A74U-01 9 7049188 7049188 G A KDM4C Silent p.Q804Q 0.17 TCGA-LD-A74U-01 9 86327643 86327643 G C UBQLN1 5'Flank 0.31 TCGA-LD-A74U-01 9 97329591 97329591 C T FBP2 Silent p.A222A 0.22 TCGA-LD-A74U-01 9 98637545 98637545 C T ERCC6L2 5'Flank 0.08 TCGA-LD-A74U-01 X 111090526 111090526 G A TRPC5 Silent p.L506L 0.09 TCGA-LD-A74U-01 X 13801510 13801510 C T GPM6B Missense_Mutation p.A167T 0.28 tolerated(0.72) benign(0.39) TCGA-LD-A74U-01 X 147106512 147106512 G A FMR1NB Missense_Mutation p.D254N 0.18 deleterious(0.01) benign(0) TCGA-LD-A74U-01 X 151909340 151909340 C T CSAG1 3'UTR 0.21 TCGA-LD-A74U-01 X 26157673 26157673 G A MAGEB18 Missense_Mutation p.E191K 0.14 tolerated(0.35) possibly_damaging(0.589) TCGA-LD-A74U-01 X 2947357 2947357 C T ARSH Silent p.L423L 0.04 TCGA-LD-A74U-01 X 45051059 45051059 C T CXorf36 Silent p.L145L 0.12 TCGA-LD-A74U-01 X 69723628 69723628 G A DLG3 3'UTR 0.20 TCGA-LD-A74U-01 X 70777114 70777114 G A OGT Missense_Mutation p.D464N 0.30 deleterious(0) benign(0.103) TCGA-LD-A74U-01 X 73044468 73044468 G C XIST RNA 0.05 TCGA-LD-A74U-01 X 74598961 74598961 G A ZDHHC15 3'UTR 0.08 TCGA-LD-A74U-01 X 78216608 78216608 G C P2RY10 Silent p.G197G 0.19 TCGA-LD-A7W5-01 10 123846157 123846157 C T TACC2 Missense_Mutation p.S1381F 0.04 possibly_damaging(0.759) TCGA-LD-A7W5-01 10 123970418 123970418 G C TACC2 Missense_Mutation p.E2160Q 0.05 possibly_damaging(0.766) TCGA-LD-A7W5-01 10 123970454 123970454 G A TACC2 Missense_Mutation p.E2172K 0.04 benign(0.178) TCGA-LD-A7W5-01 10 135183522 135183522 G C ECHS1 Missense_Mutation p.I100M 0.13 deleterious(0) probably_damaging(1) TCGA-LD-A7W5-01 10 18129728 18129728 G A MRC1 Nonsense_Mutation p.W303* 0.31 TCGA-LD-A7W5-01 10 8116192 8116192 T G GATA3 3'UTR 0.14 TCGA-LD-A7W5-01 11 118967766 118967766 C T DPAGT1 Missense_Mutation p.G390D 0.29 deleterious(0.03) benign(0.255) TCGA-LD-A7W5-01 11 49831952 49831952 A T RP11-707M1.1 RNA 0.12 TCGA-LD-A7W5-01 11 86103594 86103594 A G CCDC81 Missense_Mutation p.I104V 0.14 tolerated(1) benign(0.002) TCGA-LD-A7W5-01 12 100934552 100934552 C T NR1H4 Missense_Mutation p.P355L 0.23 tolerated(0.12) benign(0.445) TCGA-LD-A7W5-01 12 109311864 109311864 C T SVOP Silent p.A370A 0.17 TCGA-LD-A7W5-01 12 117710289 117710289 G A NOS1 Silent p.G580G 0.11 TCGA-LD-A7W5-01 12 43886973 43886973 C T ADAMTS20 Silent p.E317E 0.16 TCGA-LD-A7W5-01 13 25473616 25473616 C T CENPJ Missense_Mutation p.E978K 0.13 deleterious(0) probably_damaging(0.983) TCGA-LD-A7W5-01 13 50510361 50510361 G A SPRYD7 Missense_Mutation p.S4L 0.16 tolerated(0.29) benign(0.004) TCGA-LD-A7W5-01 13 96205100 96205100 G A CLDN10 Silent p.K31K 0.10 TCGA-LD-A7W5-01 15 85259319 85259319 G A SEC11A 5'UTR 0.11 TCGA-LD-A7W5-01 17 7144144 7144144 G C GABARAP 3'UTR 0.28 TCGA-LD-A7W5-01 17 7144204 7144204 G A GABARAP Missense_Mutation p.A108V 0.19 tolerated(0.06) possibly_damaging(0.826) TCGA-LD-A7W5-01 17 7577511 7577511 A C TP53 Missense_Mutation p.L257R 0.30 deleterious(0) probably_damaging(0.998) TCGA-LD-A7W5-01 17 77758862 77758862 C T CBX2 3'UTR 0.33 TCGA-LD-A7W5-01 18 3567581 3567581 T C DLGAP1 Splice_Site p.X656_splice 0.22 TCGA-LD-A7W5-01 19 21950311 21950311 C T ZNF100 5'UTR 0.11 TCGA-LD-A7W5-01 19 44605067 44605067 C T ZNF224 Silent p.N43N 0.12 TCGA-LD-A7W5-01 19 4538467 4538467 G A LRG1 Missense_Mutation p.R177W 0.09 tolerated(0.09) benign(0.027) TCGA-LD-A7W5-01 19 9017453 9017453 C A MUC16 Missense_Mutation p.S12624I 0.18 benign(0.262) TCGA-LD-A7W5-01 1 119962196 119962196 A C HSD3B2 Missense_Mutation p.N100H 0.09 deleterious(0) probably_damaging(1) TCGA-LD-A7W5-01 1 1448000 1448000 G C ATAD3A Intron 0.31 TCGA-LD-A7W5-01 1 161009671 161009671 T G USF1 3'UTR 0.21 TCGA-LD-A7W5-01 1 17548858 17548858 C T PADI1 Missense_Mutation p.R56C 0.22 deleterious(0.03) possibly_damaging(0.576) TCGA-LD-A7W5-01 1 200610178 200610179 GC - DDX59 3'Flank 0.13 TCGA-LD-A7W5-01 1 44466566 44466566 C T SLC6A9 Intron 0.13 TCGA-LD-A7W5-01 1 66036347 66036347 C T LEPR Missense_Mutation p.H78Y 0.11 tolerated(1) benign(0.001) TCGA-LD-A7W5-01 1 67838436 67838436 C T IL12RB2 Missense_Mutation p.R563W 0.13 deleterious(0.03) benign(0.082) TCGA-LD-A7W5-01 20 13695706 13695706 C G ESF1 Missense_Mutation p.E791Q 0.10 tolerated(0.13) benign(0.048) TCGA-LD-A7W5-01 20 15210677 15210677 G A MACROD2 Silent p.K170K 0.24 TCGA-LD-A7W5-01 20 34097856 34097856 C T CEP250 Silent p.A2346A 0.35 TCGA-LD-A7W5-01 20 9319678 9319678 A C PLCB4 Silent p.V121V 0.21 TCGA-LD-A7W5-01 21 38877823 38877824 - T DYRK1A Frame_Shift_Ins p.S494Ifs*79 0.29 TCGA-LD-A7W5-01 21 47974510 47974510 C G DIP2A Missense_Mutation p.F1059L 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-LD-A7W5-01 2 197986058 197986058 G C ANKRD44 Missense_Mutation p.Q302E 0.09 deleterious(0.02) possibly_damaging(0.757) TCGA-LD-A7W5-01 2 37306333 37306333 G A HEATR5B Nonsense_Mutation p.Q90* 0.10 TCGA-LD-A7W5-01 3 175165121 175165121 A T NAALADL2 Nonsense_Mutation p.K399* 0.15 TCGA-LD-A7W5-01 3 36588933 36588933 C T STAC 3'UTR 0.11 TCGA-LD-A7W5-01 3 52966115 52966115 C A SFMBT1 Missense_Mutation p.W221C 0.13 deleterious(0) probably_damaging(0.999) TCGA-LD-A7W5-01 4 104053873 104053873 T C CENPE Missense_Mutation p.N2301D 0.06 possibly_damaging(0.781) TCGA-LD-A7W5-01 4 184932541 184932541 C T STOX2 Silent p.S850S 0.08 TCGA-LD-A7W5-01 4 73179413 73179413 G A ADAMTS3 Missense_Mutation p.R576C 0.15 deleterious(0) probably_damaging(1) TCGA-LD-A7W5-01 5 52781045 52781045 G A FST Missense_Mutation p.G314R 0.15 deleterious(0) probably_damaging(1) TCGA-LD-A7W5-01 6 118812827 118812827 C T CEP85L Intron 0.10 TCGA-LD-A7W5-01 6 33132241 33132241 C T COL11A2 Missense_Mutation p.V1539M 0.30 unknown(0) TCGA-LD-A7W5-01 7 65157754 65157754 C T INTS4L2 RNA 0.09 TCGA-LD-A7W5-01 8 105502305 105502305 G A LRP12 3'UTR 0.14 TCGA-LD-A7W5-01 8 124787525 124787525 C T FAM91A1 Missense_Mutation p.T99I 0.17 tolerated(1) benign(0.002) TCGA-LD-A7W5-01 8 124787528 124787528 G T FAM91A1 Missense_Mutation p.G100V 0.18 tolerated(0.18) benign(0.274) TCGA-LD-A7W5-01 8 126052094 126052094 T C KIAA0196 Missense_Mutation p.N966S 0.38 tolerated(0.27) benign(0.164) TCGA-LD-A7W5-01 8 127565629 127565629 C T FAM84B 3'UTR 0.16 TCGA-LD-A7W5-01 8 62212366 62212366 T G CLVS1 5'UTR 0.17 TCGA-LD-A7W5-01 9 100070041 100070041 C T CCDC180 Missense_Mutation p.R2C 0.12 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-LD-A7W5-01 9 136029077 136029077 A T GBGT1 Missense_Mutation p.S311T 0.16 tolerated(0.78) benign(0.032) TCGA-LD-A7W5-01 9 139738902 139738902 G A C9orf172 Silent p.S12S 0.09 TCGA-LD-A7W5-01 9 141012518 141012518 G A CACNA1B Silent p.G1966G 0.13 TCGA-LD-A7W5-01 X 149014147 149014147 C A MAGEA8 3'UTR 0.10 TCGA-LD-A7W5-01 X 18582616 18582616 C T CDKL5 Missense_Mutation p.A40V 0.16 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-LD-A7W5-01 X 48844568 48844568 C T GRIPAP1 Missense_Mutation p.E305K 0.13 possibly_damaging(0.803) TCGA-LD-A7W5-01 X 67940794 67940794 A G STARD8 Missense_Mutation p.K693R 0.12 tolerated(0.08) benign(0.065) TCGA-LD-A7W5-01 X 82763895 82763895 C T POU3F4 Missense_Mutation p.T188M 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-LD-A7W6-01 10 79777416 79777416 C T POLR3A Missense_Mutation p.V450I 0.18 tolerated(0.08) possibly_damaging(0.665) TCGA-LD-A7W6-01 11 1298083 1298083 T G TOLLIP 3'UTR 0.28 TCGA-LD-A7W6-01 11 44105475 44105476 TG - ACCS 3'UTR 0.37 TCGA-LD-A7W6-01 12 6427498 6427498 C T PLEKHG6 Missense_Mutation p.T396M 0.21 tolerated(0.52) benign(0.004) TCGA-LD-A7W6-01 13 80055593 80055593 T G NDFIP2 Silent p.S85S 0.25 TCGA-LD-A7W6-01 13 99462446 99462446 A T DOCK9 Missense_Mutation p.Y1744N 0.18 deleterious(0) possibly_damaging(0.755) TCGA-LD-A7W6-01 14 64599035 64599035 C T SYNE2 Missense_Mutation p.A4798V 0.05 benign(0.234) TCGA-LD-A7W6-01 15 23812067 23812067 G A MKRN3 Missense_Mutation p.E380K 0.31 deleterious(0.03) benign(0.395) TCGA-LD-A7W6-01 15 75116703 75116703 C T LMAN1L Silent p.A445A 0.34 TCGA-LD-A7W6-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.46 TCGA-LD-A7W6-01 17 42239299 42239299 G C C17orf53 Nonstop_Mutation p.*648Sext*30 0.32 TCGA-LD-A7W6-01 17 73811250 73811250 A T UNK Missense_Mutation p.I293F 0.33 deleterious(0) probably_damaging(0.958) TCGA-LD-A7W6-01 17 76563211 76563211 T C DNAH17 Missense_Mutation p.E441G 0.33 benign(0.146) TCGA-LD-A7W6-01 18 48556700 48556700 C G SMAD4 5'UTR 0.25 TCGA-LD-A7W6-01 18 5956251 5956251 C T L3MBTL4 Missense_Mutation p.D614N 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.709) TCGA-LD-A7W6-01 19 41223629 41223629 A G ITPKC Missense_Mutation p.T197A 0.28 deleterious_low_confidence(0.05) benign(0.079) TCGA-LD-A7W6-01 19 4446629 4446629 G A UBXN6 Missense_Mutation p.A263V 0.12 deleterious(0) possibly_damaging(0.563) TCGA-LD-A7W6-01 19 46054045 46054045 G A OPA3 Intron 0.21 TCGA-LD-A7W6-01 1 100534028 100534029 GT - HIAT1 Splice_Site p.X236_splice 0.17 TCGA-LD-A7W6-01 1 114438034 114438034 G A AP4B1 Nonsense_Mutation p.Q625* 0.23 TCGA-LD-A7W6-01 1 146465962 146465962 C T NBPF12 Silent p.Y3279Y 0.58 TCGA-LD-A7W6-01 1 148004427 148004427 C A NBPF14 3'UTR 0.18 TCGA-LD-A7W6-01 1 155785762 155785762 G A GON4L Intron 0.17 TCGA-LD-A7W6-01 1 172051005 172051005 A T DNM3 Missense_Mutation p.I486F 0.22 deleterious(0) benign(0.232) TCGA-LD-A7W6-01 1 179503881 179503881 G A AXDND1 Missense_Mutation p.A939T 0.28 tolerated(0.05) possibly_damaging(0.811) TCGA-LD-A7W6-01 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.06 probably_damaging(0.992) TCGA-LD-A7W6-01 1 53755352 53755352 G A LRP8 Missense_Mutation p.T85I 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-LD-A7W6-01 1 55224463 55224463 C T PARS2 Silent p.P124P 0.40 TCGA-LD-A7W6-01 22 17265159 17265159 A G XKR3 Silent p.L244L 0.07 TCGA-LD-A7W6-01 22 22348888 22348888 G T PRAMENP RNA 0.50 TCGA-LD-A7W6-01 2 128331590 128331590 G A MYO7B Missense_Mutation p.A230T 0.25 deleterious(0) probably_damaging(1) TCGA-LD-A7W6-01 2 171376005 171376005 G A MYO3B Missense_Mutation p.R1177H 0.09 tolerated_low_confidence(0.75) benign(0) TCGA-LD-A7W6-01 3 109031530 109031530 C G DPPA2 Missense_Mutation p.E15Q 0.10 tolerated(0.08) benign(0.149) TCGA-LD-A7W6-01 3 127390383 127390383 T C PODXL2 Missense_Mutation p.I511T 0.42 deleterious(0) possibly_damaging(0.876) TCGA-LD-A7W6-01 5 140209290 140209290 C T PCDHA6 Silent p.R538R 0.35 TCGA-LD-A7W6-01 5 5466617 5466617 T C KIAA0947 Splice_Site p.X2021_splice 0.35 TCGA-LD-A7W6-01 6 154414504 154414504 C G OPRM1 Intron 0.53 TCGA-LD-A7W6-01 6 25701708 25701708 T A SCGN 3'UTR 0.38 TCGA-LD-A7W6-01 7 107789018 107789018 A T NRCAM 3'UTR 0.33 TCGA-LD-A7W6-01 7 16685218 16685218 G A ANKMY2 5'UTR 0.40 TCGA-LD-A7W6-01 8 42710953 42710953 A T RNF170 3'UTR 0.50 TCGA-LD-A7W6-01 9 139115653 139115653 C T QSOX2 Missense_Mutation p.V211M 0.26 tolerated(0.15) benign(0.062) TCGA-LD-A7W6-01 X 138884456 138884456 C A ATP11C Nonsense_Mutation p.E203* 0.07 TCGA-LD-A7W6-01 X 150348632 150348632 G A GPR50 Missense_Mutation p.V193I 0.30 tolerated(0.08) benign(0.111) TCGA-LD-A7W6-01 X 44969496 44969496 T G KDM6A Splice_Site p.X1392_splice 0.07 TCGA-LD-A7W6-01 X 48895628 48895628 G A TFE3 Silent p.V264V 0.25 TCGA-LD-A7W6-01 X 53106950 53106950 G A GPR173 3'UTR 0.25 TCGA-LD-A7W6-01 X 72225111 72225111 C T PABPC1L2B 3'UTR 0.06 TCGA-LD-A9QF-01 10 46999257 46999257 G A GPRIN2 Missense_Mutation p.R126H 0.14 tolerated(0.44) benign(0.009) TCGA-LD-A9QF-01 10 75674545 75674545 A T PLAU Missense_Mutation p.I281F 0.09 deleterious(0) probably_damaging(0.97) TCGA-LD-A9QF-01 11 67381040 67381040 C T NDUFV1 3'Flank 0.10 TCGA-LD-A9QF-01 12 100552931 100552931 C G AC010203.1 5'Flank 0.08 TCGA-LD-A9QF-01 12 49048755 49048755 T C KANSL2 Missense_Mutation p.K439R 0.04 tolerated_low_confidence(0.85) benign(0.002) TCGA-LD-A9QF-01 12 5744345 5744345 C T ANO2 Missense_Mutation p.A597T 0.10 tolerated(0.06) benign(0.245) TCGA-LD-A9QF-01 13 95280271 95280271 G A GPR180 3'UTR 0.08 TCGA-LD-A9QF-01 14 105634310 105634310 G A JAG2 Silent p.C67C 0.20 TCGA-LD-A9QF-01 14 57877794 57877794 A T NAA30 3'UTR 0.06 TCGA-LD-A9QF-01 15 70960288 70960288 T C UACA Missense_Mutation p.E912G 0.08 deleterious(0) possibly_damaging(0.844) TCGA-LD-A9QF-01 17 27953027 27953027 C T SSH2 3'UTR 0.08 TCGA-LD-A9QF-01 17 27953067 27953067 C G SSH2 3'UTR 0.09 TCGA-LD-A9QF-01 17 27953089 27953089 C T SSH2 3'UTR 0.09 TCGA-LD-A9QF-01 17 38511589 38511589 G C RARA Missense_Mutation p.V363L 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-LD-A9QF-01 17 66872639 66872639 C T ABCA8 Silent p.P1404P 0.07 TCGA-LD-A9QF-01 18 59777073 59777073 A C PIGN Missense_Mutation p.L523R 0.07 deleterious(0) possibly_damaging(0.824) TCGA-LD-A9QF-01 1 158325097 158325097 C T CD1E Silent p.F121F 0.09 TCGA-LD-A9QF-01 1 197889171 197889171 T C LHX9 Missense_Mutation p.Y82H 0.11 deleterious(0.01) possibly_damaging(0.465) TCGA-LD-A9QF-01 1 77685022 77685022 G A PIGK Silent p.F22F 0.09 TCGA-LD-A9QF-01 1 79383370 79383370 G A ELTD1 Silent p.T566T 0.07 TCGA-LD-A9QF-01 1 9791185 9791185 G C CLSTN1 Intron 0.19 TCGA-LD-A9QF-01 21 33726264 33726264 G C URB1 Silent p.L798L 0.10 TCGA-LD-A9QF-01 22 20073861 20073861 C T DGCR8 Silent p.T125T 0.10 TCGA-LD-A9QF-01 22 46772959 46772959 G - CELSR1 Frame_Shift_Del p.P2528Rfs*16 0.10 TCGA-LD-A9QF-01 2 32853206 32853206 A G TTC27 5'UTR 0.24 TCGA-LD-A9QF-01 2 73143589 73143589 T C EMX1 5'Flank 0.63 TCGA-LD-A9QF-01 3 37368699 37368699 G A GOLGA4 Silent p.Q1796Q 0.05 TCGA-LD-A9QF-01 4 25671333 25671333 G A SLC34A2 Missense_Mutation p.V234M 0.11 deleterious(0.02) benign(0.117) TCGA-LD-A9QF-01 4 85614157 85614157 C T WDFY3 Missense_Mutation p.R2977Q 0.12 deleterious(0.02) possibly_damaging(0.536) TCGA-LD-A9QF-01 5 137683830 137683830 C T FAM53C 3'UTR 0.08 TCGA-LD-A9QF-01 5 140581567 140581567 C A PCDHB11 Missense_Mutation p.S740R 0.03 deleterious_low_confidence(0.04) benign(0.095) TCGA-LD-A9QF-01 5 61684868 61684868 C T DIMT1 Missense_Mutation p.G304E 0.03 tolerated(0.26) benign(0.195) TCGA-LD-A9QF-01 6 122775048 122775048 C A SERINC1 Missense_Mutation p.W152C 0.13 deleterious(0) probably_damaging(0.996) TCGA-LD-A9QF-01 6 51491848 51491848 G A PKHD1 Missense_Mutation p.S3911F 0.17 tolerated(0.18) possibly_damaging(0.653) TCGA-LD-A9QF-01 7 150417467 150417467 C T GIMAP1 Silent p.T125T 0.10 TCGA-LD-A9QF-01 7 36726399 36726399 C T AOAH Missense_Mutation p.G43E 0.09 deleterious(0.01) possibly_damaging(0.907) TCGA-LD-A9QF-01 7 50530946 50530946 G A DDC Nonsense_Mutation p.R476* 0.14 TCGA-LD-A9QF-01 7 91641864 91641864 A T AKAP9 Missense_Mutation p.K1147I 0.08 probably_damaging(0.992) TCGA-LD-A9QF-01 8 69017409 69017409 C T PREX2 Intron 0.06 TCGA-LD-A9QF-01 X 118223520 118223520 T A KIAA1210 Missense_Mutation p.K558I 0.05 tolerated(0.18) benign(0.069) TCGA-LL-A440-01 17 37949163 37949163 C T IKZF3 Missense_Mutation p.E63K 0.10 deleterious(0.04) benign(0.125) TCGA-LL-A440-01 17 48913200 48913200 G A WFIKKN2 5'UTR 0.12 TCGA-LL-A440-01 17 60526594 60526594 A G METTL2A 3'UTR 0.16 TCGA-LL-A440-01 1 85784272 85784272 C T DDAH1 3'UTR 0.09 TCGA-LL-A440-01 21 45528885 45528885 G A PWP2 Silent p.T13T 0.11 TCGA-LL-A440-01 5 78260357 78260357 C T ARSB Missense_Mutation p.R191Q 0.07 tolerated(0.31) possibly_damaging(0.863) TCGA-LL-A50Y-01 10 90682991 90682991 A C STAMBPL1 3'UTR 0.24 TCGA-LL-A50Y-01 10 91498016 91498016 C T KIF20B Nonsense_Mutation p.Q1100* 0.48 TCGA-LL-A50Y-01 11 119183643 119183643 C T MCAM Silent p.S192S 0.37 TCGA-LL-A50Y-01 11 124756666 124756666 A G ROBO4 Missense_Mutation p.Y830H 0.40 deleterious(0) benign(0.403) TCGA-LL-A50Y-01 11 26621259 26621259 C T ANO3 Missense_Mutation p.L612F 0.34 tolerated(0.92) possibly_damaging(0.451) TCGA-LL-A50Y-01 11 3115597 3115597 C - OSBPL5 Intron 0.31 TCGA-LL-A50Y-01 11 62343415 62343415 G A TUT1 Silent p.L630L 0.50 TCGA-LL-A50Y-01 11 62744337 62744337 G A SLC22A6 Nonsense_Mutation p.R541* 0.08 TCGA-LL-A50Y-01 12 110367840 110367840 T A GIT2 3'UTR 0.44 TCGA-LL-A50Y-01 14 95556575 95556575 T A DICER1 3'UTR 0.36 TCGA-LL-A50Y-01 16 68772218 68772218 C T CDH1 Nonsense_Mutation p.Q23* 0.62 TCGA-LL-A50Y-01 16 88594480 88594480 G - ZFPM1 Frame_Shift_Del p.G184Dfs*3 0.42 TCGA-LL-A50Y-01 17 36904135 36904135 G A PCGF2 5'UTR 0.08 TCGA-LL-A50Y-01 17 42287812 42287812 G A UBTF Silent p.L463L 0.30 TCGA-LL-A50Y-01 17 51900667 51900667 G A KIF2B Silent p.P91P 0.33 TCGA-LL-A50Y-01 19 14938212 14938212 A T OR7A5 Missense_Mutation p.V281D 0.50 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-LL-A50Y-01 19 37005895 37005895 T A ZNF260 Silent p.A82A 0.36 TCGA-LL-A50Y-01 19 42342168 42342168 G A LYPD4 Missense_Mutation p.L127F 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-LL-A50Y-01 19 43407829 43407829 A C PSG6 Missense_Mutation p.F429V 0.31 tolerated_low_confidence(0.42) benign(0) TCGA-LL-A50Y-01 19 44891062 44891063 CT - ZNF285 Frame_Shift_Del p.R448Sfs*20 0.13 TCGA-LL-A50Y-01 1 104113465 104113465 C A AMY2B Intron 0.40 TCGA-LL-A50Y-01 1 117576699 117576699 C T CD101 Silent p.D1014D 0.35 TCGA-LL-A50Y-01 1 17273313 17273313 A G CROCC Missense_Mutation p.T781A 0.20 benign(0.016) TCGA-LL-A50Y-01 1 201184908 201184908 C T IGFN1 Silent p.S3079S 0.07 TCGA-LL-A50Y-01 1 78309071 78309071 T C FAM73A Silent p.D325D 0.36 TCGA-LL-A50Y-01 1 8390620 8390620 G - SLC45A1 Frame_Shift_Del p.S356Tfs*3 0.24 TCGA-LL-A50Y-01 21 44174151 44174151 G A PDE9A Missense_Mutation p.V263I 0.28 tolerated(0.35) benign(0.015) TCGA-LL-A50Y-01 2 220431781 220431781 G A OBSL1 Silent p.F635F 0.38 TCGA-LL-A50Y-01 2 228168740 228168740 C T COL4A3 Missense_Mutation p.R1345C 0.29 unknown(0) TCGA-LL-A50Y-01 2 28635030 28635030 G A FOSL2 Silent p.S232S 0.30 TCGA-LL-A50Y-01 2 80101233 80101233 T A CTNNA2 Missense_Mutation p.M206K 0.58 deleterious(0) possibly_damaging(0.488) TCGA-LL-A50Y-01 3 129130137 129130137 T A EFCAB12 Missense_Mutation p.D300V 0.31 tolerated(0.25) possibly_damaging(0.53) TCGA-LL-A50Y-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.41 tolerated(0.11) possibly_damaging(0.529) TCGA-LL-A50Y-01 3 196730792 196730792 G A MFI2 Missense_Mutation p.S706F 0.31 deleterious(0.04) possibly_damaging(0.601) TCGA-LL-A50Y-01 3 30713273 30713273 A G TGFBR2 Missense_Mutation p.T225A 0.38 tolerated(0.89) benign(0) TCGA-LL-A50Y-01 3 42234667 42234667 A G TRAK1 Silent p.Q290Q 0.34 TCGA-LL-A50Y-01 3 48625810 48625810 G A COL7A1 Missense_Mutation p.T872M 0.30 unknown(0) TCGA-LL-A50Y-01 5 176863560 176863560 G C GRK6 Intron 0.46 TCGA-LL-A50Y-01 6 133135722 133135722 C T RPS12 5'UTR 0.48 TCGA-LL-A50Y-01 7 120935756 120935756 G A CPED1 3'UTR 0.39 TCGA-LL-A50Y-01 7 123517328 123517328 A G HYAL4 3'UTR 0.27 TCGA-LL-A50Y-01 7 134850019 134850019 C - TMEM140 3'UTR 0.32 TCGA-LL-A50Y-01 7 151880169 151880169 G A KMT2C Nonsense_Mutation p.Q1719* 0.42 TCGA-LL-A50Y-01 7 23306203 23306203 T C GPNMB Silent p.Y374Y 0.36 TCGA-LL-A50Y-01 7 87323239 87323239 G A RUNDC3B Missense_Mutation p.C85Y 0.36 tolerated_low_confidence(0.26) benign(0.064) TCGA-LL-A50Y-01 9 21333116 21333116 T A KLHL9 Silent p.P581P 0.35 TCGA-LL-A50Y-01 X 105970076 105970076 C T RNF128 5'UTR 0.13 TCGA-LL-A50Y-01 X 133700655 133700655 C T PLAC1 Missense_Mutation p.G20S 0.43 tolerated(0.18) benign(0) TCGA-LL-A5YL-01 10 103190166 103190166 G A BTRC Missense_Mutation p.R38Q 0.22 deleterious_low_confidence(0.02) benign(0.001) TCGA-LL-A5YL-01 10 5683765 5683765 C T ASB13 Missense_Mutation p.S226N 0.39 deleterious(0.03) probably_damaging(0.96) TCGA-LL-A5YL-01 10 72511314 72511314 C T ADAMTS14 Silent p.I839I 0.29 TCGA-LL-A5YL-01 10 73567084 73567084 C T CDH23 Silent p.R503R 0.28 TCGA-LL-A5YL-01 10 78761245 78761245 C T KCNMA1 Intron 0.20 TCGA-LL-A5YL-01 10 91066307 91066307 G A IFIT2 Silent p.L198L 0.25 TCGA-LL-A5YL-01 11 132205064 132205064 G A NTM 3'UTR 0.40 TCGA-LL-A5YL-01 11 17632432 17632432 C A OTOG Missense_Mutation p.P1874H 0.32 benign(0.016) TCGA-LL-A5YL-01 11 18955912 18955912 C T MRGPRX1 Silent p.A140A 0.24 TCGA-LL-A5YL-01 11 43702361 43702361 A C HSD17B12 5'UTR 0.21 TCGA-LL-A5YL-01 11 44297153 44297153 C T ALX4 Silent p.G174G 0.29 TCGA-LL-A5YL-01 11 66204715 66204715 C T MRPL11 Silent p.L111L 0.11 TCGA-LL-A5YL-01 11 77378341 77378341 C G RSF1 Missense_Mutation p.G1316A 0.26 tolerated_low_confidence(0.19) benign(0.268) TCGA-LL-A5YL-01 11 823557 823557 C T PNPLA2 Missense_Mutation p.R243W 0.20 deleterious(0.02) possibly_damaging(0.881) TCGA-LL-A5YL-01 12 105611446 105611447 - T APPL2 Frame_Shift_Ins p.Q71Tfs*9 0.27 TCGA-LL-A5YL-01 12 108589947 108589947 G A WSCD2 Missense_Mutation p.R113Q 0.33 tolerated(0.15) benign(0.127) TCGA-LL-A5YL-01 12 130883193 130883193 T A RIMBP2 3'UTR 0.28 TCGA-LL-A5YL-01 12 20806922 20806922 C T PDE3A Silent p.F989F 0.25 TCGA-LL-A5YL-01 12 21172248 21172248 G A SLCO1B7 Missense_Mutation p.G51E 0.27 deleterious(0) probably_damaging(0.997) TCGA-LL-A5YL-01 12 54932707 54932707 G T NCKAP1L Missense_Mutation p.D1075Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-LL-A5YL-01 12 56482607 56482607 C T ERBB3 Missense_Mutation p.T355I 0.19 deleterious(0) probably_damaging(0.998) TCGA-LL-A5YL-01 12 57499083 57499083 C T STAT6 Silent p.K284K 0.30 TCGA-LL-A5YL-01 12 81593142 81593142 G A ACSS3 Missense_Mutation p.G425R 0.36 deleterious(0) probably_damaging(1) TCGA-LL-A5YL-01 13 39602423 39602423 C T PROSER1 Missense_Mutation p.E104K 0.33 deleterious(0) probably_damaging(0.96) TCGA-LL-A5YL-01 13 96578000 96578000 G A UGGT2 Silent p.L743L 0.17 TCGA-LL-A5YL-01 14 45673353 45673353 C T MIS18BP1 Missense_Mutation p.E1120K 0.26 deleterious(0) probably_damaging(0.968) TCGA-LL-A5YL-01 15 82555391 82555391 G A FAM154B Intron 0.21 TCGA-LL-A5YL-01 16 11868220 11868220 C A ZC3H7A Missense_Mutation p.V259L 0.62 tolerated(0.69) benign(0.013) TCGA-LL-A5YL-01 16 1877749 1877749 C T FAHD1 Silent p.I173I 0.20 TCGA-LL-A5YL-01 16 18874988 18874988 C A SMG1 Missense_Mutation p.D1227Y 0.55 deleterious(0.04) probably_damaging(0.997) TCGA-LL-A5YL-01 16 30621185 30621185 C T ZNF689 Missense_Mutation p.E60K 0.14 deleterious(0) probably_damaging(0.989) TCGA-LL-A5YL-01 17 16062148 16062148 C T NCOR1 Missense_Mutation p.E220K 0.25 probably_damaging(0.993) TCGA-LL-A5YL-01 17 27941191 27941191 C T ANKRD13B 3'UTR 0.42 TCGA-LL-A5YL-01 17 29684041 29684041 C G NF1 Nonsense_Mutation p.S2601* 0.65 TCGA-LL-A5YL-01 17 5253832 5253832 C T RABEP1 Nonsense_Mutation p.Q291* 0.27 TCGA-LL-A5YL-01 17 77760445 77760445 G A CBX2 3'UTR 0.46 TCGA-LL-A5YL-01 17 9615433 9615433 C T USP43 Silent p.L773L 0.14 TCGA-LL-A5YL-01 19 13223538 13223538 C A TRMT1 Missense_Mutation p.S284I 0.32 deleterious(0.02) benign(0.102) TCGA-LL-A5YL-01 19 18307834 18307834 C A RAB3A 3'UTR 0.22 TCGA-LL-A5YL-01 19 18967087 18967087 C A UPF1 Missense_Mutation p.T601N 0.32 tolerated(0.28) benign(0.001) TCGA-LL-A5YL-01 19 3527627 3527627 A T FZR1 Splice_Site p.X157_splice 0.07 TCGA-LL-A5YL-01 19 36106161 36106161 C G HAUS5 Missense_Mutation p.Q120E 0.19 deleterious(0.03) benign(0.075) TCGA-LL-A5YL-01 19 44038585 44038585 G A ZNF575 Missense_Mutation p.R4Q 0.25 tolerated(0.06) benign(0.003) TCGA-LL-A5YL-01 19 45976798 45976798 T G FOSB 3'UTR 0.35 TCGA-LL-A5YL-01 1 12856020 12856020 C T PRAMEF1 Missense_Mutation p.R434W 0.09 deleterious(0.03) benign(0.005) TCGA-LL-A5YL-01 1 12921509 12921509 C T PRAMEF2 Missense_Mutation p.R434W 0.17 deleterious(0.03) benign(0.006) TCGA-LL-A5YL-01 1 146756023 146756023 G A CHD1L Splice_Site p.X569_splice 0.17 TCGA-LL-A5YL-01 1 152082173 152082173 C G TCHH Missense_Mutation p.E1174Q 0.15 unknown(0) TCGA-LL-A5YL-01 1 154026847 154026847 C T NUP210L Missense_Mutation p.V1114I 0.11 tolerated(1) benign(0.001) TCGA-LL-A5YL-01 1 155237829 155237829 T C CLK2 Missense_Mutation p.I214V 0.10 deleterious(0) benign(0.144) TCGA-LL-A5YL-01 1 179782251 179782251 G A FAM163A Missense_Mutation p.V7M 0.11 deleterious(0) probably_damaging(1) TCGA-LL-A5YL-01 1 180081795 180081795 A G CEP350 3'UTR 0.17 TCGA-LL-A5YL-01 1 183486940 183486940 T A SMG7 Missense_Mutation p.S99R 0.11 deleterious(0.01) probably_damaging(0.921) TCGA-LL-A5YL-01 1 208195984 208195984 T C PLXNA2 3'UTR 0.09 TCGA-LL-A5YL-01 1 220960522 220960522 G A MARC1 Missense_Mutation p.C79Y 0.24 deleterious(0) probably_damaging(0.934) TCGA-LL-A5YL-01 1 244615168 244615168 G A ADSS 5'UTR 0.41 TCGA-LL-A5YL-01 1 27057874 27057874 C T ARID1A Nonsense_Mutation p.Q528* 0.35 TCGA-LL-A5YL-01 1 66081710 66081710 C T LEPR Missense_Mutation p.S672L 0.52 tolerated(0.06) probably_damaging(0.926) TCGA-LL-A5YL-01 20 17475250 17475250 G C BFSP1 Missense_Mutation p.I489M 0.22 deleterious(0.03) possibly_damaging(0.534) TCGA-LL-A5YL-01 20 17475259 17475259 G C BFSP1 Silent p.V486V 0.28 TCGA-LL-A5YL-01 20 36032817 36032817 G C SRC 3'UTR 0.32 TCGA-LL-A5YL-01 20 36033797 36033797 G A SRC 3'UTR 0.38 TCGA-LL-A5YL-01 21 15954518 15954518 G C SAMSN1 Missense_Mutation p.S67C 0.27 tolerated_low_confidence(0.19) benign(0.001) TCGA-LL-A5YL-01 21 47538573 47538573 G A COL6A2 Missense_Mutation p.G388R 0.25 deleterious(0) probably_damaging(1) TCGA-LL-A5YL-01 22 37334676 37334676 A T CSF2RB 3'UTR 0.29 TCGA-LL-A5YL-01 22 37690715 37690715 G A CYTH4 Silent p.E39E 0.26 TCGA-LL-A5YL-01 22 40440956 40440956 C T FAM83F 3'Flank 0.37 TCGA-LL-A5YL-01 2 135965355 135965355 G A ZRANB3 Silent p.V886V 0.23 TCGA-LL-A5YL-01 2 46525023 46525023 C T EPAS1 5'UTR 0.32 TCGA-LL-A5YL-01 3 123046605 123046605 G A ADCY5 Missense_Mutation p.R603C 0.34 deleterious(0) probably_damaging(0.998) TCGA-LL-A5YL-01 3 151046793 151046793 C T P2RY13 Silent p.V17V 0.29 TCGA-LL-A5YL-01 3 186394998 186394998 G C HRG Missense_Mutation p.D302H 0.07 tolerated(0.15) possibly_damaging(0.861) TCGA-LL-A5YL-01 3 195594362 195594362 G T TNK2 Missense_Mutation p.A999D 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.845) TCGA-LL-A5YL-01 3 195594363 195594363 C T TNK2 Missense_Mutation p.A999T 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.883) TCGA-LL-A5YL-01 3 38525178 38525178 C G ACVR2B 3'UTR 0.33 TCGA-LL-A5YL-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.31 tolerated(0.11) benign(0.066) TCGA-LL-A5YL-01 3 69134142 69134142 C T ARL6IP5 5'UTR 0.50 TCGA-LL-A5YL-01 4 177032726 177032726 G A WDR17 Missense_Mutation p.A23T 0.19 deleterious_low_confidence(0.03) benign(0.108) TCGA-LL-A5YL-01 5 135416281 135416281 C T VTRNA2-1 RNA 0.31 TCGA-LL-A5YL-01 5 139193879 139193879 C T PSD2 Missense_Mutation p.R316W 0.22 deleterious(0) probably_damaging(1) TCGA-LL-A5YL-01 5 160047653 160047653 G T ATP10B Missense_Mutation p.P706Q 0.36 tolerated(0.17) possibly_damaging(0.642) TCGA-LL-A5YL-01 5 37049264 37049264 C T NIPBL Missense_Mutation p.S2272L 0.29 deleterious(0) probably_damaging(0.996) TCGA-LL-A5YL-01 6 1610938 1610938 C TAA FOXC1 Frame_Shift_Ins p.I87Kfs*16 0.25 TCGA-LL-A5YL-01 6 7584585 7584585 G A DSP Missense_Mutation p.G2364S 0.31 probably_damaging(1) TCGA-LL-A5YL-01 7 1526650 1526650 C T INTS1 Missense_Mutation p.E912K 0.27 deleterious(0) probably_damaging(0.995) TCGA-LL-A5YL-01 8 146156835 146156835 G A ZNF16 Silent p.S446S 0.35 TCGA-LL-A5YL-01 9 130575807 130575807 T G FPGS Missense_Mutation p.I563S 0.32 deleterious(0.05) possibly_damaging(0.771) TCGA-LL-A5YL-01 9 136291103 136291103 G A ADAMTS13 Missense_Mutation p.V154I 0.31 deleterious(0.01) possibly_damaging(0.842) TCGA-LL-A5YL-01 9 34833093 34833093 C T FAM205B RNA 0.36 TCGA-LL-A5YL-01 X 10176293 10176293 G A CLCN4 Missense_Mutation p.R351H 0.12 tolerated(0.11) benign(0.014) TCGA-LL-A5YL-01 X 106359285 106359285 C T RBM41 Splice_Site p.X42_splice 0.30 TCGA-LL-A5YL-01 X 135279279 135279279 C T FHL1 Intron 0.31 TCGA-LL-A5YL-01 X 153587944 153587944 G A FLNA Silent p.T1350T 0.30 TCGA-LL-A5YL-01 X 32591707 32591707 C T DMD Silent p.K584K 0.22 TCGA-LL-A5YL-01 X 69596001 69596001 G A KIF4A Missense_Mutation p.E659K 0.14 deleterious(0.02) probably_damaging(0.968) TCGA-LL-A5YM-01 10 8115947 8115953 ACCACAC - GATA3 Frame_Shift_Del p.P433Tfs*41 0.27 TCGA-LL-A5YM-01 11 64693374 64693374 G A PPP2R5B Silent p.Q56Q 0.86 TCGA-LL-A5YM-01 12 112174710 112174710 T C ACAD10 Missense_Mutation p.M570T 0.33 tolerated(0.7) benign(0.039) TCGA-LL-A5YM-01 12 113446912 113446912 C T OAS2 Missense_Mutation p.A639V 0.07 deleterious(0) probably_damaging(0.987) TCGA-LL-A5YM-01 12 132625824 132625824 C T DDX51 Missense_Mutation p.A416T 0.33 deleterious(0.01) probably_damaging(0.957) TCGA-LL-A5YM-01 12 48238446 48238446 C T VDR 3'UTR 0.19 TCGA-LL-A5YM-01 12 56708704 56708704 C A CNPY2 Silent p.V45V 0.47 TCGA-LL-A5YM-01 12 98850566 98850567 - C SLC9A7P1 RNA 0.27 TCGA-LL-A5YM-01 13 103387378 103387378 G T CCDC168 Missense_Mutation p.S594R 0.37 tolerated(0.2) possibly_damaging(0.504) TCGA-LL-A5YM-01 13 111896602 111896612 TCCAGCAAATG - ARHGEF7 Frame_Shift_Del p.F325Sfs*52 0.63 TCGA-LL-A5YM-01 13 40229889 40229889 T G COG6 Missense_Mutation p.V9G 0.24 tolerated_low_confidence(0.33) benign(0.01) TCGA-LL-A5YM-01 14 106207951 106207951 G A IGHG1 Silent p.D284D 0.33 TCGA-LL-A5YM-01 14 38679347 38679347 C T SSTR1 Silent p.R251R 0.27 TCGA-LL-A5YM-01 15 51535201 51535201 A G CYP19A1 Intron 0.50 TCGA-LL-A5YM-01 15 94927352 94927352 T C MCTP2 Missense_Mutation p.F562L 0.06 tolerated(0.09) probably_damaging(0.956) TCGA-LL-A5YM-01 16 847930 847930 C T CHTF18 Silent p.V961V 0.18 TCGA-LL-A5YM-01 19 17163685 17163686 - A HAUS8 Frame_Shift_Ins p.L293Ffs*15 0.30 TCGA-LL-A5YM-01 19 49094928 49094928 C T SULT2B1 Silent p.I162I 0.50 TCGA-LL-A5YM-01 19 51017028 51017028 C T ASPDH Splice_Site p.X18_splice 0.48 TCGA-LL-A5YM-01 19 56320768 56320768 C T NLRP11 Missense_Mutation p.G403E 0.25 tolerated(1) benign(0.01) TCGA-LL-A5YM-01 1 155989928 155989928 G C SSR2 Missense_Mutation p.L11V 0.52 tolerated(0.41) possibly_damaging(0.874) TCGA-LL-A5YM-01 1 1677211 1677211 G A SLC35E2 5'UTR 0.50 TCGA-LL-A5YM-01 1 19665366 19665367 - A CAPZB 3'UTR 0.68 TCGA-LL-A5YM-01 1 197024886 197024886 C T F13B Missense_Mutation p.R438H 0.38 tolerated(0.77) benign(0.004) TCGA-LL-A5YM-01 1 202551818 202551818 C T PPP1R12B 3'UTR 0.10 TCGA-LL-A5YM-01 1 204379009 204379009 C G PPP1R15B Missense_Mutation p.E511Q 0.22 tolerated(0.3) benign(0.315) TCGA-LL-A5YM-01 20 643461 643461 G T SCRT2 3'UTR 0.31 TCGA-LL-A5YM-01 21 47966968 47966968 G A DIP2A Intron 0.56 TCGA-LL-A5YM-01 22 19163471 19163471 A C SLC25A1 3'UTR 0.21 TCGA-LL-A5YM-01 2 109124816 109124816 T A GCC2 3'UTR 0.10 TCGA-LL-A5YM-01 2 141526899 141526899 G A LRP1B Missense_Mutation p.L1881F 0.39 possibly_damaging(0.587) TCGA-LL-A5YM-01 2 163130442 163130442 C T IFIH1 Missense_Mutation p.E773K 0.38 deleterious(0.01) probably_damaging(0.938) TCGA-LL-A5YM-01 2 179614554 179614554 T A TTN Intron 0.20 TCGA-LL-A5YM-01 3 187446261 187446261 G A BCL6 Missense_Mutation p.T476M 0.39 tolerated(0.06) benign(0.124) TCGA-LL-A5YM-01 3 52938732 52938732 C G SFMBT1 3'UTR 0.39 TCGA-LL-A5YM-01 3 72427063 72427063 T A RYBP 3'UTR 0.38 TCGA-LL-A5YM-01 6 48035986 48035986 G A PTCHD4 Nonsense_Mutation p.R136* 0.29 TCGA-LL-A5YM-01 8 11403602 11403602 C G BLK Missense_Mutation p.H55Q 0.57 tolerated(0.62) benign(0.021) TCGA-LL-A5YM-01 8 80831317 80831317 C G MRPS28 Silent p.L154L 0.25 TCGA-LL-A5YM-01 8 93003894 93003894 C T RUNX1T1 Missense_Mutation p.D333N 0.15 deleterious(0.02) benign(0.063) TCGA-LL-A5YM-01 8 93003921 93003921 C A RUNX1T1 Missense_Mutation p.D324Y 0.14 deleterious(0.02) probably_damaging(0.942) TCGA-LL-A5YM-01 X 109246780 109246780 C A TMEM164 5'UTR 0.18 TCGA-LL-A5YM-01 X 153214565 153214565 G A HCFC1 3'UTR 0.33 TCGA-LL-A5YM-01 X 153220825 153220825 C T HCFC1 Missense_Mutation p.V1009I 0.46 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-LL-A5YM-01 X 30873340 30873344 TTCTG - TAB3 Frame_Shift_Del p.N146Kfs*44 0.49 TCGA-LL-A5YM-01 X 71427063 71427063 T C ERCC6L Silent p.K518K 0.20 TCGA-LL-A5YN-01 10 45799522 45799522 C T OR13A1 Missense_Mutation p.A117T 0.15 tolerated(0.64) benign(0.008) TCGA-LL-A5YN-01 11 108124625 108124626 - T ATM Frame_Shift_Ins p.L663Ffs*42 0.14 TCGA-LL-A5YN-01 11 32112870 32112870 C T RCN1 Missense_Mutation p.S43L 0.60 tolerated(0.45) benign(0.003) TCGA-LL-A5YN-01 11 47688405 47688405 G A AGBL2 Intron 0.19 TCGA-LL-A5YN-01 12 123253804 123253804 T C DENR 3'UTR 0.31 TCGA-LL-A5YN-01 12 23686394 23686394 A C SOX5 3'UTR 0.37 TCGA-LL-A5YN-01 12 9304857 9304857 T A PZP Missense_Mutation p.M1391L 0.28 deleterious(0.04) probably_damaging(0.91) TCGA-LL-A5YN-01 13 111287768 111287768 G A CARKD Intron 0.08 TCGA-LL-A5YN-01 14 20388956 20388956 G A OR4K5 Missense_Mutation p.G64E 0.16 deleterious(0) possibly_damaging(0.77) TCGA-LL-A5YN-01 14 31858176 31858176 C T HEATR5A Missense_Mutation p.E270K 0.15 tolerated(0.06) benign(0.099) TCGA-LL-A5YN-01 15 43825895 43825896 - AT PPIP5K1 3'UTR 0.35 TCGA-LL-A5YN-01 16 70298894 70298894 A G AARS Missense_Mutation p.Y487H 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-LL-A5YN-01 17 58030441 58030441 C A RNFT1 Missense_Mutation p.W402L 0.11 deleterious(0) probably_damaging(1) TCGA-LL-A5YN-01 19 36673811 36673811 G A ZNF565 Missense_Mutation p.H353Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-LL-A5YN-01 19 42593862 42593863 - TATA POU2F2 3'Flank 0.31 TCGA-LL-A5YN-01 19 55658224 55658224 G T TNNT1 Intron 0.30 TCGA-LL-A5YN-01 19 758171 758171 G A MISP Missense_Mutation p.D409N 0.12 tolerated(0.22) benign(0.054) TCGA-LL-A5YN-01 1 160397344 160397345 - ATTATT VANGL2 3'UTR 0.35 TCGA-LL-A5YN-01 1 203140613 203140613 G A MYBPH Missense_Mutation p.L231F 0.19 tolerated(0.28) possibly_damaging(0.534) TCGA-LL-A5YN-01 1 41303380 41303380 C T KCNQ4 Missense_Mutation p.R597W 0.11 deleterious(0) probably_damaging(0.986) TCGA-LL-A5YN-01 1 701747 701747 G A RP11-206L10.2 RNA 0.34 TCGA-LL-A5YN-01 1 92852827 92852827 C T RPAP2 3'UTR 0.30 TCGA-LL-A5YN-01 20 43996235 43996235 G A SYS1 3'UTR 0.10 TCGA-LL-A5YN-01 20 5996107 5996107 T C CRLS1 Missense_Mutation p.V182A 0.17 deleterious(0.03) benign(0.243) TCGA-LL-A5YN-01 21 30391545 30391545 C G RWDD2B Silent p.G18G 0.10 TCGA-LL-A5YN-01 21 30718060 30718060 C T BACH1 3'UTR 0.09 TCGA-LL-A5YN-01 22 20230090 20230090 C A RTN4R Missense_Mutation p.R189L 0.26 deleterious(0) benign(0.089) TCGA-LL-A5YN-01 2 130939271 130939271 C A SMPD4 5'UTR 0.14 TCGA-LL-A5YN-01 2 170606585 170606585 C T KLHL23 3'UTR 0.24 TCGA-LL-A5YN-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.26 tolerated(0.11) possibly_damaging(0.529) TCGA-LL-A5YN-01 3 97593604 97593604 T G CRYBG3 Missense_Mutation p.L1189R 0.12 TCGA-LL-A5YN-01 4 38777097 38777097 G A TLR10 Silent p.L39L 0.21 TCGA-LL-A5YN-01 4 42626614 42626614 G A ATP8A1 Missense_Mutation p.T101I 0.22 deleterious(0) probably_damaging(0.991) TCGA-LL-A5YN-01 5 78981679 78981679 A G PAPD4 3'UTR 0.12 TCGA-LL-A5YN-01 6 27277998 27277998 G A POM121L2 Missense_Mutation p.A651V 0.18 tolerated(0.08) benign(0.242) TCGA-LL-A5YN-01 6 30570058 30570058 T G PPP1R10 Missense_Mutation p.S790R 0.21 tolerated_low_confidence(0.1) unknown(0) TCGA-LL-A5YN-01 6 85453997 85453997 C A TBX18 Missense_Mutation p.R329L 0.24 deleterious(0) benign(0.129) TCGA-LL-A5YN-01 7 128446755 128446755 G A CCDC136 Missense_Mutation p.R421Q 0.14 tolerated(0.27) benign(0.114) TCGA-LL-A5YN-01 7 36447355 36447355 C T ANLN Missense_Mutation p.P296S 0.09 tolerated(0.1) benign(0.224) TCGA-LL-A5YN-01 7 99796515 99796515 C T STAG3 Missense_Mutation p.R468C 0.08 deleterious(0) benign(0.091) TCGA-LL-A5YN-01 8 145730416 145730416 C T GPT Missense_Mutation p.R133W 0.07 deleterious(0) probably_damaging(1) TCGA-LL-A5YN-01 9 36339341 36339341 G A RNF38 3'UTR 0.09 TCGA-LL-A5YN-01 X 133988346 133988346 G A FAM122C 3'UTR 0.18 TCGA-LL-A5YN-01 X 152846538 152846539 - GTT ATP2B3 3'UTR 0.10 TCGA-LL-A5YN-01 X 30254992 30254992 A T MAGEB3 Missense_Mutation p.R317S 0.09 deleterious(0.03) benign(0.037) TCGA-LL-A5YN-01 X 53631552 53631552 G C HUWE1 Missense_Mutation p.Q914E 0.15 probably_damaging(0.96) TCGA-LL-A5YN-01 X 72432979 72432979 G A NAP1L2 Silent p.N450N 0.07 TCGA-LL-A5YN-01 X 7811101 7811101 C T VCX Intron 0.23 TCGA-LL-A5YO-01 10 25312372 25312372 A C THNSL1 Missense_Mutation p.I74L 0.07 tolerated(0.08) possibly_damaging(0.851) TCGA-LL-A5YO-01 12 31249874 31249874 C A DDX11 Missense_Mutation p.A571E 0.14 tolerated(1) benign(0.008) TCGA-LL-A5YO-01 12 39170041 39170041 C G CPNE8 Missense_Mutation p.R157T 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-LL-A5YO-01 13 26788508 26788508 G C RNF6 Nonsense_Mutation p.S504* 0.11 TCGA-LL-A5YO-01 13 39263585 39263585 G C FREM2 Missense_Mutation p.E702Q 0.17 tolerated(0.2) benign(0.093) TCGA-LL-A5YO-01 14 60975970 60975970 T C SIX6 5'UTR 0.30 TCGA-LL-A5YO-01 14 60976445 60976445 T G SIX6 Missense_Mutation p.V110G 0.16 deleterious(0) probably_damaging(0.962) TCGA-LL-A5YO-01 15 101922336 101922336 G A PCSK6 Missense_Mutation p.S497L 0.08 deleterious(0.05) benign(0.003) TCGA-LL-A5YO-01 15 89731451 89731451 G C ABHD2 Missense_Mutation p.K281N 0.12 tolerated(0.07) benign(0.01) TCGA-LL-A5YO-01 16 2149969 2149969 A C PKD1 Silent p.R3272R 0.16 TCGA-LL-A5YO-01 16 70070460 70070460 T A PDXDC2P RNA 0.11 TCGA-LL-A5YO-01 17 18925323 18925323 G A GRAP Silent p.C201C 0.12 TCGA-LL-A5YO-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.18 deleterious(0) probably_damaging(1) TCGA-LL-A5YO-01 19 33870950 33870950 G A CEBPG 3'UTR 0.09 TCGA-LL-A5YO-01 19 55020268 55020268 C A LAIR2 Missense_Mutation p.P130T 0.12 tolerated(0.08) benign(0.058) TCGA-LL-A5YO-01 1 153520190 153520190 C T S100A3 Missense_Mutation p.D92N 0.20 tolerated(0.17) benign(0.002) TCGA-LL-A5YO-01 1 154456554 154456554 C A SHE 3'UTR 0.36 TCGA-LL-A5YO-01 1 155265234 155265234 C T PKLR Silent p.L167L 0.13 TCGA-LL-A5YO-01 1 155270776 155270776 T G PKLR Intron 0.16 TCGA-LL-A5YO-01 1 15819301 15819301 C A CASP9 3'UTR 0.12 TCGA-LL-A5YO-01 1 226040471 226040471 C T TMEM63A Splice_Site p.X600_splice 0.28 TCGA-LL-A5YO-01 1 27092759 27092759 G C ARID1A Missense_Mutation p.G927A 0.08 unknown(0) TCGA-LL-A5YO-01 1 33123070 33123070 G T RBBP4 Silent p.G69G 0.15 TCGA-LL-A5YO-01 1 46874204 46874204 T C FAAH Missense_Mutation p.M342T 0.10 deleterious(0) possibly_damaging(0.588) TCGA-LL-A5YO-01 1 47402424 47402424 T C CYP4A11 Missense_Mutation p.Q141R 0.11 tolerated(0.18) benign(0.443) TCGA-LL-A5YO-01 20 16360558 16360558 G C KIF16B Missense_Mutation p.Q697E 0.07 tolerated(0.14) possibly_damaging(0.594) TCGA-LL-A5YO-01 20 3846387 3846387 G C MAVS Missense_Mutation p.D406H 0.07 deleterious(0) probably_damaging(0.929) TCGA-LL-A5YO-01 21 11039385 11039385 C A BAGE2 RNA 0.06 TCGA-LL-A5YO-01 21 19698835 19698835 A C TMPRSS15 Missense_Mutation p.M612R 0.32 deleterious(0) probably_damaging(0.997) TCGA-LL-A5YO-01 2 179410788 179410788 G A TTN Silent p.C31725C 0.14 TCGA-LL-A5YO-01 2 187490281 187490281 A G ITGAV Missense_Mutation p.T164A 0.06 tolerated(0.14) benign(0.001) TCGA-LL-A5YO-01 2 201438212 201438212 C A SGOL2 Missense_Mutation p.T1048N 0.18 deleterious(0.01) possibly_damaging(0.613) TCGA-LL-A5YO-01 2 220083044 220083044 C G ABCB6 Missense_Mutation p.G118R 0.12 deleterious(0.04) benign(0.088) TCGA-LL-A5YO-01 2 85554464 85554464 G C TGOLN2 Missense_Mutation p.Q131E 0.09 deleterious(0.01) benign(0.092) TCGA-LL-A5YO-01 3 3139901 3139901 C T IL5RA Silent p.R147R 0.06 TCGA-LL-A5YO-01 3 3192638 3192638 A G CRBN Missense_Mutation p.F414L 0.12 deleterious(0) probably_damaging(0.992) TCGA-LL-A5YO-01 3 33099722 33099722 C G GLB1 Missense_Mutation p.D198H 0.22 deleterious(0.05) possibly_damaging(0.818) TCGA-LL-A5YO-01 3 51433234 51433234 G A RBM15B 3'UTR 0.09 TCGA-LL-A5YO-01 4 13604204 13604204 A G BOD1L1 Silent p.V1440V 0.09 TCGA-LL-A5YO-01 4 145659526 145659526 A T HHIP 3'UTR 0.11 TCGA-LL-A5YO-01 4 187541716 187541716 G C FAT1 Missense_Mutation p.I2008M 0.17 benign(0.133) TCGA-LL-A5YO-01 5 171290716 171290716 A T FBXW11 3'UTR 0.10 TCGA-LL-A5YO-01 5 9629468 9629468 G A TAS2R1 Missense_Mutation p.A226V 0.10 deleterious(0) probably_damaging(0.95) TCGA-LL-A5YO-01 6 150267606 150267606 C G ULBP2 Missense_Mutation p.L150V 0.09 tolerated(0.06) possibly_damaging(0.693) TCGA-LL-A5YO-01 6 29407976 29407976 C T OR10C1 Silent p.L62L 0.21 TCGA-LL-A5YO-01 6 46826873 46826873 C G GPR116 Missense_Mutation p.V923L 0.07 tolerated(0.36) possibly_damaging(0.523) TCGA-LL-A5YO-01 7 117501284 117501284 G T CTTNBP2 Missense_Mutation p.D56E 0.21 tolerated(0.07) possibly_damaging(0.498) TCGA-LL-A5YO-01 7 23239802 23239802 A C NUPL2 Missense_Mutation p.N237T 0.18 tolerated(0.13) benign(0.093) TCGA-LL-A5YO-01 7 37253051 37253051 T G ELMO1 Silent p.R281R 0.15 TCGA-LL-A5YO-01 7 91737836 91737836 C T AKAP9 Missense_Mutation p.P3859S 0.10 probably_damaging(0.999) TCGA-LL-A5YO-01 8 42317419 42317419 G A SLC20A2 Missense_Mutation p.A203V 0.07 deleterious(0.01) possibly_damaging(0.692) TCGA-LL-A5YO-01 9 131027879 131027879 C G GOLGA2 Missense_Mutation p.Q279H 0.08 deleterious(0.05) benign(0.384) TCGA-LL-A5YO-01 9 132397566 132397566 C G NTMT1 Missense_Mutation p.I165M 0.16 deleterious(0) probably_damaging(0.992) TCGA-LL-A5YO-01 9 136535741 136535741 G A SARDH Silent p.G820G 0.18 TCGA-LL-A5YO-01 9 139100340 139100340 G T QSOX2 3'UTR 0.21 TCGA-LL-A5YO-01 9 139745248 139745248 C T PHPT1 Silent p.I109I 0.09 TCGA-LL-A5YO-01 9 446381 446381 G C DOCK8 Missense_Mutation p.Q1864H 0.05 deleterious(0) probably_damaging(0.998) TCGA-LL-A5YO-01 X 101971998 101971998 C T GPRASP2 Missense_Mutation p.T734M 0.07 deleterious(0) probably_damaging(0.993) TCGA-LL-A5YO-01 X 153031697 153031697 G C PLXNB3 Missense_Mutation p.C11S 0.11 tolerated_low_confidence(0.78) benign(0) TCGA-LL-A5YO-01 X 153220381 153220381 C G HCFC1 Missense_Mutation p.E1157Q 0.13 tolerated_low_confidence(0.11) benign(0.001) TCGA-LL-A5YO-01 X 27840129 27840129 A G MAGEB10 Missense_Mutation p.I236V 0.18 deleterious(0.04) benign(0.131) TCGA-LL-A5YP-01 10 106074852 106074852 C G ITPRIP Missense_Mutation p.E320Q 0.56 deleterious(0.01) possibly_damaging(0.671) TCGA-LL-A5YP-01 10 71010072 71010072 C T HKDC1 Missense_Mutation p.L533F 0.43 deleterious(0.01) probably_damaging(1) TCGA-LL-A5YP-01 10 88728181 88728181 C A ADIRF 5'UTR 0.53 TCGA-LL-A5YP-01 10 89692893 89692893 C G PTEN Missense_Mutation p.A126G 0.50 deleterious(0) probably_damaging(0.935) TCGA-LL-A5YP-01 11 33573778 33573778 G C KIAA1549L Missense_Mutation p.L985F 0.24 tolerated(0.16) probably_damaging(1) TCGA-LL-A5YP-01 11 34093309 34093309 G A CAPRIN1 Missense_Mutation p.G85R 0.13 deleterious(0) probably_damaging(1) TCGA-LL-A5YP-01 11 57182476 57182476 C A SLC43A3 Missense_Mutation p.L291F 0.12 deleterious(0) probably_damaging(0.954) TCGA-LL-A5YP-01 11 62520275 62520275 G C ZBTB3 Missense_Mutation p.P338A 0.16 tolerated(0.49) benign(0.003) TCGA-LL-A5YP-01 11 66278118 66278118 G A BBS1 5'UTR 0.21 TCGA-LL-A5YP-01 12 10342529 10342529 G A TMEM52B Silent p.R94R 0.20 TCGA-LL-A5YP-01 12 123468372 123468372 C G PITPNM2 3'UTR 0.10 TCGA-LL-A5YP-01 12 6993532 6993532 C A RPL13P5 RNA 0.26 TCGA-LL-A5YP-01 14 101441215 101441215 C A SNORD114-17 RNA 0.62 TCGA-LL-A5YP-01 14 105395685 105395685 G T PLD4 Missense_Mutation p.R170S 0.53 deleterious(0.02) possibly_damaging(0.616) TCGA-LL-A5YP-01 14 70634857 70634857 C T SLC8A3 Missense_Mutation p.A95T 0.24 deleterious(0) probably_damaging(0.991) TCGA-LL-A5YP-01 14 75602565 75602565 G C TMED10 Missense_Mutation p.P146A 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-LL-A5YP-01 15 102514187 102514187 C T WASH3P 3'Flank 0.16 TCGA-LL-A5YP-01 15 66794392 66794392 G C RPL4 Intron 0.71 TCGA-LL-A5YP-01 16 24788394 24788394 C T TNRC6A Nonsense_Mutation p.Q102* 0.29 TCGA-LL-A5YP-01 16 58076179 58076179 C G MMP15 Missense_Mutation p.N403K 0.43 deleterious(0.04) possibly_damaging(0.671) TCGA-LL-A5YP-01 16 71773187 71773187 A T AP1G1 Missense_Mutation p.F689Y 0.30 tolerated(1) benign(0.079) TCGA-LL-A5YP-01 16 87902747 87902747 G A SLC7A5 Silent p.V94V 0.20 TCGA-LL-A5YP-01 16 9892166 9892166 A G GRIN2A Missense_Mutation p.I775T 0.22 deleterious(0) probably_damaging(0.976) TCGA-LL-A5YP-01 17 41256900 41256900 C G BRCA1 Missense_Mutation p.D96H 0.50 deleterious(0) probably_damaging(0.983) TCGA-LL-A5YP-01 17 46114548 46114548 T C COPZ2 Intron 0.72 TCGA-LL-A5YP-01 17 48503617 48503617 C T ACSF2 5'UTR 0.59 TCGA-LL-A5YP-01 17 49197891 49197891 C T SPAG9 Missense_Mutation p.D43N 0.60 deleterious(0.01) probably_damaging(0.968) TCGA-LL-A5YP-01 17 649773 649773 G A GEMIN4 Missense_Mutation p.R504C 0.54 deleterious(0.04) benign(0.001) TCGA-LL-A5YP-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.64 deleterious(0.04) possibly_damaging(0.83) TCGA-LL-A5YP-01 18 72245477 72245477 C T CNDP1 Missense_Mutation p.T361I 0.16 tolerated(0.26) benign(0.038) TCGA-LL-A5YP-01 18 77193711 77193711 G A NFATC1 Silent p.A440A 0.15 TCGA-LL-A5YP-01 19 1005215 1005215 C T GRIN3B Missense_Mutation p.P572L 0.23 deleterious(0) probably_damaging(1) TCGA-LL-A5YP-01 19 16338376 16338376 G A AP1M1 Missense_Mutation p.V243M 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-LL-A5YP-01 19 16861091 16861091 G T NWD1 Missense_Mutation p.W546C 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-LL-A5YP-01 19 40485743 40485743 G T PSMC4 Silent p.V231V 0.18 TCGA-LL-A5YP-01 19 40486244 40486244 C T PSMC4 Missense_Mutation p.P324S 0.38 deleterious(0) probably_damaging(0.978) TCGA-LL-A5YP-01 19 47544277 47544277 C G NPAS1 Missense_Mutation p.L371V 0.45 deleterious(0) probably_damaging(0.999) TCGA-LL-A5YP-01 19 48640923 48640923 C A LIG1 Silent p.R370R 0.13 TCGA-LL-A5YP-01 19 56515220 56515220 G A NLRP5 Nonsense_Mutation p.W67* 0.13 TCGA-LL-A5YP-01 19 58290715 58290715 A T ZNF586 Nonsense_Mutation p.R254* 0.41 TCGA-LL-A5YP-01 19 6432215 6432215 C G SLC25A41 Missense_Mutation p.V70L 0.25 tolerated(0.16) benign(0.261) TCGA-LL-A5YP-01 1 155311817 155311817 G C ASH1L Nonsense_Mutation p.Y2790* 0.13 TCGA-LL-A5YP-01 1 157669486 157669486 T C FCRL3 Silent p.Q16Q 0.10 TCGA-LL-A5YP-01 1 169484771 169484771 C T F5 Missense_Mutation p.E2147K 0.73 deleterious(0) probably_damaging(0.976) TCGA-LL-A5YP-01 1 175334320 175334320 T G TNR Missense_Mutation p.I805L 0.23 tolerated(0.33) benign(0.107) TCGA-LL-A5YP-01 1 19186013 19186013 T C TAS1R2 Missense_Mutation p.I48V 0.52 tolerated(0.39) benign(0.004) TCGA-LL-A5YP-01 1 197446852 197446852 T G CRB1 Missense_Mutation p.L1355W 0.43 deleterious(0) probably_damaging(1) TCGA-LL-A5YP-01 1 212515539 212515539 G T PPP2R5A Nonsense_Mutation p.E164* 0.36 TCGA-LL-A5YP-01 1 228285577 228285577 G A ARF1 Missense_Mutation p.A137T 0.18 tolerated_low_confidence(0.14) benign(0.042) TCGA-LL-A5YP-01 1 22852823 22852823 C T ZBTB40 Silent p.L1218L 0.12 TCGA-LL-A5YP-01 1 24658094 24658094 T A GRHL3 Missense_Mutation p.Y66N 0.19 deleterious(0) probably_damaging(0.949) TCGA-LL-A5YP-01 1 25655578 25655578 C A RHD 3'UTR 0.67 TCGA-LL-A5YP-01 20 40033821 40033821 C G CHD6 Missense_Mutation p.M2520I 0.40 deleterious(0) benign(0.059) TCGA-LL-A5YP-01 20 62494080 62494080 C T ABHD16B Missense_Mutation p.A396V 0.39 tolerated(0.05) benign(0.004) TCGA-LL-A5YP-01 21 34132196 34132196 G A PAXBP1 Missense_Mutation p.S362L 0.18 tolerated(0.34) benign(0.029) TCGA-LL-A5YP-01 21 46067173 46067173 C T KRTAP10-11 Silent p.S266S 0.36 TCGA-LL-A5YP-01 22 50987927 50987927 G A KLHDC7B Silent p.E444E 0.41 TCGA-LL-A5YP-01 22 51012017 51012017 C T CPT1B Silent p.R366R 0.49 TCGA-LL-A5YP-01 2 170592537 170592537 C A KLHL23 Missense_Mutation p.T338K 0.16 tolerated(0.2) benign(0.007) TCGA-LL-A5YP-01 2 206872095 206872095 G T INO80D Missense_Mutation p.P611T 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-LL-A5YP-01 2 210705293 210705293 C G UNC80 Nonsense_Mutation p.S1095* 0.15 TCGA-LL-A5YP-01 2 231265076 231265076 C A SP140L Intron 0.22 TCGA-LL-A5YP-01 2 42578323 42578323 T C COX7A2L 3'UTR 0.15 TCGA-LL-A5YP-01 2 54092150 54092150 C T PSME4 3'UTR 0.33 TCGA-LL-A5YP-01 2 61441300 61441300 C T USP34 Silent p.R2859R 0.17 TCGA-LL-A5YP-01 2 85280279 85280279 A C KCMF1 Missense_Mutation p.D298A 0.45 tolerated(0.22) benign(0) TCGA-LL-A5YP-01 2 86015022 86015022 G C ATOH8 3'UTR 0.39 TCGA-LL-A5YP-01 2 9545042 9545042 T C ITGB1BP1 3'UTR 0.13 TCGA-LL-A5YP-01 3 140866071 140866071 C T SPSB4 Missense_Mutation p.P261L 0.36 tolerated(0.07) benign(0.217) TCGA-LL-A5YP-01 3 140866072 140866072 C T SPSB4 Silent p.P261P 0.36 TCGA-LL-A5YP-01 3 148884851 148884851 G A HPS3 Missense_Mutation p.A874T 0.36 tolerated(0.22) probably_damaging(0.981) TCGA-LL-A5YP-01 3 168538980 168538980 G T EGFEM1P Splice_Site 0.32 TCGA-LL-A5YP-01 3 40204291 40204291 G T MYRIP Missense_Mutation p.R180S 0.47 deleterious(0) possibly_damaging(0.828) TCGA-LL-A5YP-01 3 48298422 48298422 C T ZNF589 Intron 0.53 TCGA-LL-A5YP-01 3 48419899 48419899 G C FBXW12 Silent p.R166R 0.23 TCGA-LL-A5YP-01 3 52407038 52407038 C A DNAH1 Missense_Mutation p.D2318E 0.21 probably_damaging(0.991) TCGA-LL-A5YP-01 3 65425633 65425633 C A MAGI1 Missense_Mutation p.K397N 0.44 deleterious(0) benign(0.012) TCGA-LL-A5YP-01 4 86952585 86952585 C A MAPK10 Splice_Site p.X371_splice 0.12 TCGA-LL-A5YP-01 5 110413289 110413289 G C TSLP 3'Flank 0.44 TCGA-LL-A5YP-01 5 140537518 140537518 A G PCDHB17 3'UTR 0.10 TCGA-LL-A5YP-01 5 141041664 141041664 G T ARAP3 Missense_Mutation p.L987I 0.17 tolerated(0.65) possibly_damaging(0.669) TCGA-LL-A5YP-01 5 1877787 1877787 C G IRX4 3'UTR 0.30 TCGA-LL-A5YP-01 5 2755276 2755276 G C C5orf38 3'UTR 0.33 TCGA-LL-A5YP-01 6 10898248 10898248 T C SYCP2L Missense_Mutation p.V114A 0.11 tolerated(0.23) benign(0.032) TCGA-LL-A5YP-01 6 45390267 45390267 C T RUNX2 Intron 0.12 TCGA-LL-A5YP-01 7 100680637 100680637 T C MUC17 Silent p.Y1980Y 0.15 TCGA-LL-A5YP-01 7 100895283 100895283 C A FIS1 5'UTR 0.20 TCGA-LL-A5YP-01 7 123672212 123672212 A G TMEM229A Silent p.F282F 0.58 TCGA-LL-A5YP-01 7 127668876 127668876 G C LRRC4 Missense_Mutation p.N606K 0.10 tolerated_low_confidence(0.21) benign(0.003) TCGA-LL-A5YP-01 7 80300444 80300444 T A CD36 Missense_Mutation p.S324T 0.41 tolerated(0.4) benign(0.009) TCGA-LL-A5YP-01 7 92027881 92027881 C G ANKIB1 Missense_Mutation p.P963R 0.48 deleterious_low_confidence(0.02) benign(0.1) TCGA-LL-A5YP-01 7 94931605 94931605 T A PON1 Missense_Mutation p.D274V 0.20 deleterious(0) probably_damaging(1) TCGA-LL-A5YP-01 7 98493397 98493397 T C TRRAP Missense_Mutation p.F154S 0.19 benign(0.307) TCGA-LL-A5YP-01 8 122626343 122626343 G T HAS2 3'UTR 0.31 TCGA-LL-A5YP-01 8 42692843 42692843 C T THAP1 3'UTR 0.20 TCGA-LL-A5YP-01 9 133470877 133470877 C G FUBP3 Missense_Mutation p.A31G 0.25 tolerated(0.1) benign(0.082) TCGA-LL-A5YP-01 9 134151294 134151294 G A FAM78A Silent p.I91I 0.16 TCGA-LL-A5YP-01 9 140878699 140878699 C T CACNA1B Missense_Mutation p.T589M 0.47 deleterious(0) possibly_damaging(0.603) TCGA-LL-A5YP-01 9 4299661 4299661 C A GLIS3 5'UTR 0.44 TCGA-LL-A5YP-01 X 102586974 102586974 C T TCEAL7 3'UTR 0.16 TCGA-LL-A5YP-01 X 15262616 15262616 C G ASB9 3'UTR 0.05 TCGA-LL-A5YP-01 X 153906338 153906338 G A GAB3 3'UTR 0.23 TCGA-LL-A5YP-01 X 53610743 53610743 C A HUWE1 Missense_Mutation p.M1765I 0.24 benign(0.108) TCGA-LL-A5YP-01 X 54472628 54472628 C T FGD1 Missense_Mutation p.D934N 0.07 tolerated(0.11) benign(0.094) TCGA-LL-A5YP-01 X 71497123 71497123 A G RPS4X 5'UTR 0.21 TCGA-LL-A6FP-01 10 102052715 102052715 T - PKD2L1 Frame_Shift_Del p.T624Pfs*2 0.24 TCGA-LL-A6FP-01 10 78771758 78771758 G C KCNMA1 Missense_Mutation p.P687A 0.39 tolerated(0.11) benign(0.217) TCGA-LL-A6FP-01 11 128850565 128850565 C A ARHGAP32 Missense_Mutation p.R606L 0.77 deleterious(0) probably_damaging(0.998) TCGA-LL-A6FP-01 11 130724624 130724624 C A RP11-890B15.2 Intron 0.24 TCGA-LL-A6FP-01 11 32118869 32118869 A G RCN1 Missense_Mutation p.Y145C 0.28 deleterious(0) probably_damaging(0.95) TCGA-LL-A6FP-01 11 55579128 55579128 C A OR5L1 Missense_Mutation p.F62L 0.26 tolerated(0.06) benign(0.105) TCGA-LL-A6FP-01 11 61110064 61110075 ATTGTGAAACTC - DAK In_Frame_Del p.I237_L240del 0.48 TCGA-LL-A6FP-01 11 65267998 65267998 A G MALAT1 RNA 0.28 TCGA-LL-A6FP-01 11 67185046 67185046 G A CARNS1 Missense_Mutation p.E58K 0.61 tolerated(0.29) benign(0.01) TCGA-LL-A6FP-01 12 121097712 121097712 G T CABP1 Splice_Site p.X229_splice 0.42 TCGA-LL-A6FP-01 12 82783681 82783681 G A METTL25 Missense_Mutation p.D171N 0.97 tolerated(0.49) benign(0.056) TCGA-LL-A6FP-01 12 85266568 85266568 G T SLC6A15 Nonsense_Mutation p.S372* 0.18 TCGA-LL-A6FP-01 13 77672459 77672459 T A MYCBP2 Missense_Mutation p.N2906Y 0.55 benign(0.319) TCGA-LL-A6FP-01 14 68066801 68066801 C A PIGH Silent p.S40S 0.35 TCGA-LL-A6FP-01 14 89039272 89039272 G A ZC3H14 Missense_Mutation p.C261Y 0.27 tolerated(0.13) probably_damaging(0.967) TCGA-LL-A6FP-01 15 90014896 90014896 G A RHCG 3'UTR 0.50 TCGA-LL-A6FP-01 16 28990562 28990562 C A SPNS1 Missense_Mutation p.D177E 0.12 deleterious(0) probably_damaging(0.98) TCGA-LL-A6FP-01 16 68842359 68842392 CACATTTCCCAACTCCTCTCCTGGCCTCAGAAGA - CDH1 Frame_Shift_Del p.T141Rfs*63 0.85 TCGA-LL-A6FP-01 17 27816735 27816735 A G TAOK1 Missense_Mutation p.I237V 0.52 deleterious(0) probably_damaging(0.991) TCGA-LL-A6FP-01 17 43473611 43473612 - G ARHGAP27 Frame_Shift_Ins p.L397Pfs*10 0.33 TCGA-LL-A6FP-01 17 56296585 56296585 C T MKS1 Missense_Mutation p.E3K 0.57 deleterious(0.03) benign(0.046) TCGA-LL-A6FP-01 17 60813454 60813454 G C MARCH10 Missense_Mutation p.S592C 0.37 deleterious(0.01) possibly_damaging(0.706) TCGA-LL-A6FP-01 18 67068481 67068481 A C DOK6 Translation_Start_Site p.M1? 0.30 deleterious(0) benign(0.318) TCGA-LL-A6FP-01 19 1073732 1073732 G A HMHA1 Missense_Mutation p.G253E 0.89 deleterious(0.02) benign(0.295) TCGA-LL-A6FP-01 19 34900126 34900126 G A RP11-618P17.4 Missense_Mutation p.D162N 0.46 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-LL-A6FP-01 1 145282081 145282081 G A NOTCH2NL 3'UTR 0.08 TCGA-LL-A6FP-01 1 150208116 150208118 TCT - ANP32E In_Frame_Del p.K6del 0.10 TCGA-LL-A6FP-01 1 152777919 152777919 G A LCE1C Silent p.P12P 0.65 TCGA-LL-A6FP-01 1 184589935 184589935 C T C1orf21 3'UTR 0.21 TCGA-LL-A6FP-01 1 185276647 185276647 C A IVNS1ABP Nonsense_Mutation p.E169* 0.20 TCGA-LL-A6FP-01 1 211652422 211652422 G A RD3 Missense_Mutation p.R182W 0.27 deleterious(0) probably_damaging(1) TCGA-LL-A6FP-01 1 236558935 236558935 T G EDARADD Intron 0.29 TCGA-LL-A6FP-01 1 236716899 236716899 C T HEATR1 Silent p.T2073T 0.19 TCGA-LL-A6FP-01 1 6157494 6157494 C T KCNAB2 Intron 0.89 TCGA-LL-A6FP-01 20 49577344 49577344 G A MOCS3 3'UTR 0.57 TCGA-LL-A6FP-01 21 15554173 15554173 G A LIPI Silent p.D204D 0.09 TCGA-LL-A6FP-01 21 28210310 28210310 G A ADAMTS1 Missense_Mutation p.A831V 0.61 tolerated(0.6) benign(0.034) TCGA-LL-A6FP-01 21 33887132 33887132 G A EVA1C Missense_Mutation p.E320K 0.24 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FP-01 21 45919671 45919671 G T TSPEAR Missense_Mutation p.R669S 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.547) TCGA-LL-A6FP-01 22 26239704 26239704 T A MYO18B Missense_Mutation p.S1071T 0.50 tolerated(0.72) benign(0.002) TCGA-LL-A6FP-01 22 31685600 31685600 G A PIK3IP1 Silent p.F131F 0.40 TCGA-LL-A6FP-01 2 116572470 116572470 G A DPP10 Missense_Mutation p.G605D 0.46 deleterious(0) probably_damaging(1) TCGA-LL-A6FP-01 2 132237647 132237647 T A TUBA3D Missense_Mutation p.D127E 0.96 tolerated_low_confidence(0.24) benign(0.011) TCGA-LL-A6FP-01 2 137814587 137814587 G A THSD7B Missense_Mutation p.G246E 0.98 deleterious(0.03) probably_damaging(0.972) TCGA-LL-A6FP-01 2 15519821 15519821 G A NBAS Silent p.V1165V 0.25 TCGA-LL-A6FP-01 2 189839117 189839117 G T COL3A1 5'UTR 0.88 TCGA-LL-A6FP-01 2 25141526 25141526 C T ADCY3 Missense_Mutation p.A111T 0.09 tolerated(0.38) probably_damaging(0.998) TCGA-LL-A6FP-01 2 25830169 25830169 C T DTNB Silent p.T128T 0.19 TCGA-LL-A6FP-01 3 12877572 12877572 G A RPL32 3'UTR 0.52 TCGA-LL-A6FP-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.69 deleterious(0.02) probably_damaging(0.959) TCGA-LL-A6FP-01 3 52472966 52472966 A G SEMA3G Silent p.P493P 0.28 TCGA-LL-A6FP-01 4 16504273 16504273 G A LDB2 Missense_Mutation p.S372F 0.35 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-LL-A6FP-01 4 27024725 27024725 T C STIM2 3'UTR 0.41 TCGA-LL-A6FP-01 4 47896254 47896254 C T NFXL1 Silent p.L465L 0.70 TCGA-LL-A6FP-01 4 75167472 75167472 A G MTHFD2L Silent p.T330T 0.58 TCGA-LL-A6FP-01 4 77069541 77069541 G A NUP54 5'UTR 0.27 TCGA-LL-A6FP-01 4 77661757 77661757 C G SHROOM3 Missense_Mutation p.P811A 0.55 tolerated(0.08) benign(0.158) TCGA-LL-A6FP-01 5 112336912 112336912 A G DCP2 Silent p.P188P 0.36 TCGA-LL-A6FP-01 5 138642964 138642964 C T MATR3 5'UTR 0.38 TCGA-LL-A6FP-01 6 112017597 112017597 C T FYN Missense_Mutation p.E309K 0.60 tolerated(0.23) possibly_damaging(0.771) TCGA-LL-A6FP-01 6 165713959 165713959 C A C6orf118 Missense_Mutation p.C257F 0.33 deleterious(0.03) possibly_damaging(0.48) TCGA-LL-A6FP-01 6 27419320 27419320 T C ZNF184 Missense_Mutation p.N673S 0.27 tolerated(0.36) benign(0.011) TCGA-LL-A6FP-01 6 31599370 31599377 GAAACCCC - PRRC2A Frame_Shift_Del p.E974Qfs*40 0.25 TCGA-LL-A6FP-01 7 150746072 150746072 G A ASIC3 Missense_Mutation p.G34R 0.75 tolerated(0.52) benign(0.014) TCGA-LL-A6FP-01 7 151891600 151891600 G A KMT2C Nonsense_Mutation p.Q1478* 0.67 TCGA-LL-A6FP-01 7 151945086 151945086 G A KMT2C Silent p.I811I 0.07 TCGA-LL-A6FP-01 7 27192341 27192341 G T HOXA7 3'Flank 0.64 TCGA-LL-A6FP-01 7 8792075 8792075 A G NXPH1 3'UTR 0.82 TCGA-LL-A6FP-01 7 93091423 93091423 C A CALCR Splice_Site p.X192_splice 0.15 TCGA-LL-A6FP-01 7 95614267 95614267 C T DYNC1I1 Nonsense_Mutation p.R258* 0.26 TCGA-LL-A6FP-01 8 41577275 41577275 G T ANK1 Missense_Mutation p.D370E 0.19 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FP-01 8 87414339 87414339 G C WWP1 Missense_Mutation p.D211H 0.55 tolerated(0.16) benign(0.303) TCGA-LL-A6FP-01 9 112216828 112216828 G A PTPN3 Nonsense_Mutation p.R106* 0.21 TCGA-LL-A6FP-01 9 134497239 134497239 C G RAPGEF1 Missense_Mutation p.D618H 0.55 deleterious(0) possibly_damaging(0.839) TCGA-LL-A6FP-01 9 8375991 8375991 G A PTPRD Missense_Mutation p.R1536C 0.28 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FP-01 X 102006862 102006862 C T BHLHB9 3'UTR 0.35 TCGA-LL-A6FP-01 X 110644254 110644254 C T DCX Silent p.G304G 0.43 TCGA-LL-A6FP-01 X 114425112 114425112 C T RBMXL3 Missense_Mutation p.R370C 0.86 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-LL-A6FP-01 X 151821304 151821304 G T GABRQ Nonsense_Mutation p.E487* 0.79 TCGA-LL-A6FP-01 X 45605635 45605635 C T MIR221 RNA 0.85 TCGA-LL-A6FP-01 X 70787861 70787861 G T OGT Missense_Mutation p.R954L 0.89 deleterious(0) possibly_damaging(0.862) TCGA-LL-A6FQ-01 10 108432662 108432662 G A SORCS1 Silent p.A674A 0.22 TCGA-LL-A6FQ-01 10 115614728 115614728 G A NHLRC2 Missense_Mutation p.E33K 0.41 tolerated(0.24) benign(0.086) TCGA-LL-A6FQ-01 10 16982123 16982123 T A CUBN Missense_Mutation p.N1819I 0.25 deleterious(0) probably_damaging(0.991) TCGA-LL-A6FQ-01 10 25887177 25887177 G A GPR158 Silent p.P874P 0.27 TCGA-LL-A6FQ-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.30 TCGA-LL-A6FQ-01 10 93273933 93273933 A G HECTD2 3'UTR 0.20 TCGA-LL-A6FQ-01 10 96971671 96971671 G A C10orf129 Nonsense_Mutation p.W264* 0.41 TCGA-LL-A6FQ-01 11 7110275 7110275 C T RBMXL2 5'UTR 0.40 TCGA-LL-A6FQ-01 12 108954431 108954431 T C SART3 Intron 0.15 TCGA-LL-A6FQ-01 12 117693836 117693836 C T NOS1 Silent p.P846P 0.26 TCGA-LL-A6FQ-01 12 4722927 4722927 T C DYRK4 3'UTR 0.42 TCGA-LL-A6FQ-01 12 48135192 48135192 C G RAPGEF3 Intron 0.38 TCGA-LL-A6FQ-01 13 78475314 78475314 A G EDNRB Missense_Mutation p.L367P 0.12 deleterious(0) probably_damaging(0.976) TCGA-LL-A6FQ-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.37 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FQ-01 14 20483201 20483201 G A OR4K14 Missense_Mutation p.S51F 0.21 tolerated(0.52) benign(0.002) TCGA-LL-A6FQ-01 14 23512120 23512120 G A PSMB11 Missense_Mutation p.R229Q 0.14 tolerated(0.27) benign(0.002) TCGA-LL-A6FQ-01 14 30047537 30047537 C A PRKD1 Missense_Mutation p.V822L 0.15 deleterious(0) possibly_damaging(0.612) TCGA-LL-A6FQ-01 14 50121551 50121551 G A POLE2 Silent p.L342L 0.36 TCGA-LL-A6FQ-01 14 73437383 73437383 C T ZFYVE1 3'UTR 0.27 TCGA-LL-A6FQ-01 16 30017777 30017777 G A DOC2A Silent p.V338V 0.22 TCGA-LL-A6FQ-01 16 30794552 30794552 C T ZNF629 Missense_Mutation p.R366Q 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-LL-A6FQ-01 16 4389221 4389221 C T GLIS2 3'UTR 0.52 TCGA-LL-A6FQ-01 16 75258678 75258678 G A CTRB1 Missense_Mutation p.D236N 0.21 tolerated(0.13) benign(0.002) TCGA-LL-A6FQ-01 17 1375289 1375289 G A MYO1C Nonsense_Mutation p.Q645* 0.62 TCGA-LL-A6FQ-01 17 19289706 19289706 C T MFAP4 Missense_Mutation p.G77S 0.76 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FQ-01 17 7980407 7980407 G A ALOX12B Silent p.S392S 0.32 TCGA-LL-A6FQ-01 19 33904485 33904485 C T PEPD Missense_Mutation p.G246S 0.29 tolerated(0.06) benign(0.117) TCGA-LL-A6FQ-01 19 51994929 51994929 C A SIGLEC12 Missense_Mutation p.G585V 0.31 deleterious(0.04) possibly_damaging(0.554) TCGA-LL-A6FQ-01 19 58049756 58049756 C T ZNF549 Nonsense_Mutation p.R462* 0.21 TCGA-LL-A6FQ-01 19 694833 694833 C T PRSS57 Missense_Mutation p.A73T 0.33 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FQ-01 1 158226778 158226778 C T CD1A Silent p.A269A 0.15 TCGA-LL-A6FQ-01 1 18554425 18554425 C A IGSF21 Missense_Mutation p.P35H 0.41 deleterious(0) probably_damaging(1) TCGA-LL-A6FQ-01 22 20749662 20749662 A G ZNF74 Missense_Mutation p.N25S 0.30 tolerated(0.27) probably_damaging(0.968) TCGA-LL-A6FQ-01 2 118583939 118583939 G A DDX18 Missense_Mutation p.R539H 0.28 tolerated(0.06) benign(0.072) TCGA-LL-A6FQ-01 2 148779018 148779018 C T ORC4 5'Flank 0.41 TCGA-LL-A6FQ-01 2 178085375 178085376 - G HNRNPA3 3'Flank 0.24 TCGA-LL-A6FQ-01 2 204045167 204045167 A T NBEAL1 Missense_Mutation p.N2147I 0.24 deleterious(0) probably_damaging(0.936) TCGA-LL-A6FQ-01 2 229890495 229890495 G A PID1 Silent p.C200C 0.08 TCGA-LL-A6FQ-01 3 10127594 10127595 - G FANCD2 Frame_Shift_Ins p.E1109Gfs*64 0.17 TCGA-LL-A6FQ-01 3 107799022 107799022 T C CD47 Silent p.L72L 0.33 TCGA-LL-A6FQ-01 3 123452576 123452576 G A MYLK Nonsense_Mutation p.Q423* 0.18 TCGA-LL-A6FQ-01 3 133307881 133307881 C A CDV3 3'UTR 0.32 TCGA-LL-A6FQ-01 3 133307909 133307909 C A CDV3 3'UTR 0.28 TCGA-LL-A6FQ-01 3 148741929 148741929 G A GYG1 Missense_Mutation p.S233N 0.29 tolerated(0.29) benign(0) TCGA-LL-A6FQ-01 3 45944182 45944182 C T CCR9 3'UTR 0.34 TCGA-LL-A6FQ-01 3 7782673 7782673 T G GRM7 3'UTR 0.14 TCGA-LL-A6FQ-01 4 170638970 170638970 G A CLCN3 Silent p.K798K 0.39 TCGA-LL-A6FQ-01 4 177138028 177138028 C A ASB5 Missense_Mutation p.R268L 0.52 deleterious(0.02) possibly_damaging(0.744) TCGA-LL-A6FQ-01 4 187541401 187541401 G A FAT1 Silent p.N2113N 0.29 TCGA-LL-A6FQ-01 4 20535275 20535275 C T SLIT2 Missense_Mutation p.T590M 0.31 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FQ-01 4 3117101 3117101 C T HTT Missense_Mutation p.S273L 0.32 benign(0.027) TCGA-LL-A6FQ-01 4 44449816 44449816 G A KCTD8 Missense_Mutation p.A242V 0.25 deleterious(0.02) benign(0.336) TCGA-LL-A6FQ-01 5 102432279 102432279 G T GIN1 Missense_Mutation p.H420Q 0.34 tolerated(0.06) probably_damaging(0.986) TCGA-LL-A6FQ-01 5 140564387 140564387 C T PCDHB16 Silent p.Y751Y 0.13 TCGA-LL-A6FQ-01 5 141007715 141007715 A - HDAC3 Frame_Shift_Del p.V244Gfs*72 0.33 TCGA-LL-A6FQ-01 5 6378597 6378597 C T MED10 5'UTR 0.21 TCGA-LL-A6FQ-01 5 9044613 9044613 A G SEMA5A Missense_Mutation p.C993R 0.34 tolerated(0.07) possibly_damaging(0.456) TCGA-LL-A6FQ-01 5 9044616 9044616 A G SEMA5A Missense_Mutation p.Y992H 0.33 deleterious(0) possibly_damaging(0.746) TCGA-LL-A6FQ-01 6 27839743 27839743 G A HIST1H3I Silent p.R117R 0.28 TCGA-LL-A6FQ-01 6 28227745 28227745 G A NKAPL Missense_Mutation p.R199K 0.24 tolerated(0.55) unknown(0) TCGA-LL-A6FQ-01 6 30919536 30919536 C A DPCR1 Missense_Mutation p.P1099T 0.17 tolerated(0.21) possibly_damaging(0.461) TCGA-LL-A6FQ-01 6 31106452 31106452 A T PSORS1C1 Missense_Mutation p.L21F 0.11 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-LL-A6FQ-01 7 128520471 128520471 C T KCP RNA 0.27 TCGA-LL-A6FQ-01 7 295913 295913 T C FAM20C Missense_Mutation p.F391L 0.38 tolerated(0.21) possibly_damaging(0.837) TCGA-LL-A6FQ-01 7 84628849 84628849 G C SEMA3D Silent p.G747G 0.48 TCGA-LL-A6FQ-01 9 139342933 139342933 G A SEC16A Intron 0.25 TCGA-LL-A6FQ-01 9 43853504 43853504 C T CNTNAP3B Silent p.Y588Y 0.29 TCGA-LL-A6FQ-01 9 96860356 96860356 T A PTPDC1 Missense_Mutation p.V501D 0.20 deleterious(0.01) possibly_damaging(0.667) TCGA-LL-A6FQ-01 X 139866052 139866052 G A CDR1 Silent p.S160S 0.30 TCGA-LL-A6FQ-01 X 147030864 147030864 T A FMR1 3'UTR 0.23 TCGA-LL-A6FQ-01 X 152614431 152614431 C T ZNF275 3'UTR 0.36 TCGA-LL-A6FQ-01 X 30254893 30254893 C A MAGEB3 Missense_Mutation p.S284R 0.16 deleterious(0.01) possibly_damaging(0.876) TCGA-LL-A6FQ-01 X 37655269 37655269 G A CYBB Silent p.T183T 0.28 TCGA-LL-A6FR-01 11 114262282 114262282 T C C11orf71 3'UTR 0.50 TCGA-LL-A6FR-01 11 118373520 118373520 T - KMT2A Frame_Shift_Del p.S2305Lfs*2 0.53 TCGA-LL-A6FR-01 11 45204541 45204541 A G PRDM11 Missense_Mutation p.E118G 0.09 tolerated(0.11) possibly_damaging(0.903) TCGA-LL-A6FR-01 12 106631871 106631871 C G CKAP4 3'UTR 0.10 TCGA-LL-A6FR-01 13 25428215 25428215 C T RNF17 Silent p.N1181N 0.22 TCGA-LL-A6FR-01 14 65220455 65220455 C T SPTB Silent p.Q2134Q 0.19 TCGA-LL-A6FR-01 14 90872193 90872193 G T CALM1 3'UTR 0.31 TCGA-LL-A6FR-01 16 89980995 89980995 T G MC1R 5'Flank 0.23 TCGA-LL-A6FR-01 16 929647 929647 C T LMF1 Missense_Mutation p.E274K 0.32 deleterious(0) probably_damaging(0.997) TCGA-LL-A6FR-01 17 26816301 26816301 G A SLC13A2 Missense_Mutation p.V58I 0.12 tolerated(0.08) benign(0.258) TCGA-LL-A6FR-01 17 39923712 39923712 C T JUP Silent p.L276L 0.23 TCGA-LL-A6FR-01 17 59949700 59949700 T C INTS2 Missense_Mutation p.I910V 0.61 tolerated(0.68) benign(0) TCGA-LL-A6FR-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.62 tolerated(0.13) possibly_damaging(0.631) TCGA-LL-A6FR-01 17 78971141 78971141 G C CHMP6 Missense_Mutation p.Q165H 0.43 deleterious(0.01) benign(0.071) TCGA-LL-A6FR-01 17 80369328 80369330 TAC - OGFOD3 Splice_Site p.X127_splice 0.30 TCGA-LL-A6FR-01 19 15989681 15989681 C T CYP4F2 Missense_Mutation p.R488H 0.24 tolerated(0.06) benign(0.178) TCGA-LL-A6FR-01 19 8997465 8997465 G C MUC16 Missense_Mutation p.Q13653E 0.23 possibly_damaging(0.734) TCGA-LL-A6FR-01 1 149859134 149859134 A T HIST2H2AB Missense_Mutation p.N111K 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.816) TCGA-LL-A6FR-01 1 156779585 156779585 T C SH2D2A Silent p.A204A 0.16 TCGA-LL-A6FR-01 1 201016302 201016315 TGAACTTCCGGAAG - CACNA1S Frame_Shift_Del p.F1533Efs*26 0.12 TCGA-LL-A6FR-01 1 21011400 21011408 CGGCAGGGG - KIF17 In_Frame_Del p.P709_P711del 0.39 TCGA-LL-A6FR-01 1 248616615 248616615 C T OR2T2 Nonsense_Mutation p.R173* 0.30 TCGA-LL-A6FR-01 20 49520524 49520525 - TTGGAACATAGTTTCTA ADNP Nonsense_Mutation p.L4* 0.12 TCGA-LL-A6FR-01 20 52198110 52198110 G A ZNF217 Missense_Mutation p.T419M 0.23 tolerated(0.05) benign(0.223) TCGA-LL-A6FR-01 21 11047513 11047513 T C BAGE2 RNA 0.03 TCGA-LL-A6FR-01 21 40190504 40190504 G A ETS2 Missense_Mutation p.V249I 0.23 tolerated(0.43) benign(0.005) TCGA-LL-A6FR-01 22 19005592 19005592 G A DGCR9 RNA 0.09 TCGA-LL-A6FR-01 22 19005621 19005621 A C DGCR9 RNA 0.12 TCGA-LL-A6FR-01 22 19005777 19005777 G C DGCR9 RNA 0.14 TCGA-LL-A6FR-01 22 20640754 20640754 G A AC011718.2 Intron 0.11 TCGA-LL-A6FR-01 22 30689751 30689751 G - TBC1D10A Frame_Shift_Del p.H320Qfs*44 0.33 TCGA-LL-A6FR-01 22 37425543 37425543 G A MPST Silent p.G314G 0.10 TCGA-LL-A6FR-01 22 38121348 38121348 C G TRIOBP Missense_Mutation p.Q929E 0.87 deleterious_low_confidence(0) possibly_damaging(0.561) TCGA-LL-A6FR-01 22 46505817 46505817 G A FLJ27365 Missense_Mutation p.R137Q 0.08 tolerated_low_confidence(0.32) unknown(0) TCGA-LL-A6FR-01 22 46640868 46640868 G A CDPF1 3'UTR 0.18 TCGA-LL-A6FR-01 22 50282387 50282387 G A ZBED4 3'UTR 0.09 TCGA-LL-A6FR-01 2 234115780 234115780 A C INPP5D 3'UTR 0.08 TCGA-LL-A6FR-01 2 33952233 33952233 C T AC009499.1 Intron 0.21 TCGA-LL-A6FR-01 2 5835898 5835898 T C SOX11 3'UTR 0.18 TCGA-LL-A6FR-01 4 184931548 184931548 C T STOX2 Silent p.D519D 0.53 TCGA-LL-A6FR-01 4 22749368 22749368 G A GBA3 Missense_Mutation p.A246T 0.36 tolerated(0.24) benign(0.184) TCGA-LL-A6FR-01 5 135207499 135207499 A G SLC25A48 Intron 0.24 TCGA-LL-A6FR-01 5 139931698 139931698 A C SRA1 Missense_Mutation p.S87A 0.42 tolerated(0.38) benign(0.001) TCGA-LL-A6FR-01 5 140182300 140182300 C T PCDHA3 Silent p.S506S 0.05 TCGA-LL-A6FR-01 5 40775531 40775531 T C PRKAA1 Missense_Mutation p.Y115C 0.35 deleterious(0.01) possibly_damaging(0.851) TCGA-LL-A6FR-01 6 10935379 10935379 G T SYCP2L Missense_Mutation p.S591I 0.32 deleterious(0.01) possibly_damaging(0.742) TCGA-LL-A6FR-01 6 11191135 11191135 C T NEDD9 Missense_Mutation p.V323I 0.17 tolerated(0.69) benign(0.003) TCGA-LL-A6FR-01 6 26546345 26546345 C G HMGN4 3'UTR 0.09 TCGA-LL-A6FR-01 6 87865332 87865332 A T ZNF292 Missense_Mutation p.Q8L 0.18 deleterious(0.01) benign(0.044) TCGA-LL-A6FR-01 7 117232078 117232078 G A CFTR Silent p.L619L 0.19 TCGA-LL-A6FR-01 7 123593977 123593977 T C SPAM1 Missense_Mutation p.I118T 0.21 tolerated(0.33) benign(0.007) TCGA-LL-A6FR-01 7 13940383 13940383 C G ETV1 Missense_Mutation p.E398Q 0.24 deleterious(0) probably_damaging(1) TCGA-LL-A6FR-01 7 149474941 149474941 G A ZNF467 5'Flank 0.21 TCGA-LL-A6FR-01 8 125463735 125463735 G A TRMT12 Silent p.V189V 0.13 TCGA-LL-A6FR-01 8 145660742 145660742 C T TONSL Intron 0.32 TCGA-LL-A6FR-01 8 146035539 146035539 G C ZNF517 3'Flank 0.35 TCGA-LL-A6FR-01 8 146035653 146035653 G C ZNF517 3'Flank 0.24 TCGA-LL-A6FR-01 8 146035854 146035854 G A ZNF517 3'Flank 0.25 TCGA-LL-A6FR-01 8 146035880 146035880 G A ZNF517 3'Flank 0.24 TCGA-LL-A6FR-01 8 146035954 146035954 G C ZNF517 3'Flank 0.21 TCGA-LL-A6FR-01 8 27779159 27779159 G A SCARA5 Missense_Mutation p.A282V 0.18 tolerated(0.25) benign(0.001) TCGA-LL-A6FR-01 8 72110812 72110812 T C EYA1 3'UTR 0.20 TCGA-LL-A6FR-01 9 138703365 138703367 AGT - CAMSAP1 In_Frame_Del p.T1533del 0.54 TCGA-LL-A6FR-01 9 15177755 15177755 C G TTC39B Missense_Mutation p.C594S 0.23 deleterious(0.01) probably_damaging(1) TCGA-LL-A6FR-01 9 72349077 72349077 T A PTAR1 Silent p.T139T 0.18 TCGA-LL-A6FR-01 X 27766474 27766474 G A DCAF8L2 Missense_Mutation p.G488S 0.21 deleterious(0) probably_damaging(0.996) TCGA-LL-A6FR-01 X 49846385 49846385 G A CLCN5 Missense_Mutation p.V272M 0.15 deleterious(0) probably_damaging(0.999) TCGA-LL-A6FR-01 X 49857111 49857111 A T CLCN5 3'UTR 0.07 TCGA-LL-A6FR-01 X 50054197 50054197 G A CCNB3 Missense_Mutation p.E1010K 0.14 tolerated(1) benign(0.305) TCGA-LL-A6FR-01 X 73040413 73040413 A G TSIX RNA 0.34 TCGA-LL-A73Y-01 10 105903322 105903322 C G WDR96 Missense_Mutation p.L1340F 0.48 tolerated(0.22) possibly_damaging(0.642) TCGA-LL-A73Y-01 10 27702890 27702890 G A PTCHD3 Missense_Mutation p.P97L 0.55 tolerated(0.22) possibly_damaging(0.859) TCGA-LL-A73Y-01 10 35858953 35858953 G C CCNY 3'UTR 0.37 TCGA-LL-A73Y-01 10 5807298 5807298 G C GDI2 3'UTR 0.48 TCGA-LL-A73Y-01 10 69676659 69676659 A T SIRT1 3'UTR 0.29 TCGA-LL-A73Y-01 10 70097066 70097066 G A HNRNPH3 Missense_Mutation p.E30K 0.53 deleterious(0.02) unknown(0) TCGA-LL-A73Y-01 10 70520788 70520788 G A CCAR1 Missense_Mutation p.E649K 0.50 tolerated(0.17) possibly_damaging(0.663) TCGA-LL-A73Y-01 10 70520914 70520914 G T CCAR1 Nonsense_Mutation p.E691* 0.55 TCGA-LL-A73Y-01 10 91067067 91067067 G C IFIT2 Missense_Mutation p.D452H 0.46 tolerated(0.58) possibly_damaging(0.491) TCGA-LL-A73Y-01 11 118964762 118964762 T G H2AFX 3'UTR 0.44 TCGA-LL-A73Y-01 11 134188771 134188771 G T GLB1L3 Missense_Mutation p.V633F 0.50 deleterious(0) possibly_damaging(0.729) TCGA-LL-A73Y-01 11 14157008 14157008 C G RNA5SP332 3'Flank 0.44 TCGA-LL-A73Y-01 11 3819150 3819150 G C NUP98 5'Flank 0.42 TCGA-LL-A73Y-01 11 47726162 47726162 C G AGBL2 Missense_Mutation p.K173N 0.34 tolerated(0.38) benign(0.002) TCGA-LL-A73Y-01 11 57583926 57583926 C G CTNND1 3'UTR 0.25 TCGA-LL-A73Y-01 11 60658683 60658683 G A PRPF19 Silent p.I490I 0.44 TCGA-LL-A73Y-01 11 62432924 62432924 G C C11orf48 Intron 0.43 TCGA-LL-A73Y-01 11 67202502 67202502 C T RPS6KB2 Silent p.P437P 0.51 TCGA-LL-A73Y-01 11 67923942 67923942 G C SUV420H1 3'UTR 0.43 TCGA-LL-A73Y-01 12 123259169 123259169 G A CCDC62 5'UTR 0.47 TCGA-LL-A73Y-01 12 131438875 131438875 T A GPR133 5'UTR 0.52 TCGA-LL-A73Y-01 12 64878226 64878226 T C TBK1 Missense_Mutation p.I379T 0.26 deleterious(0) probably_damaging(0.94) TCGA-LL-A73Y-01 12 75785016 75785016 G C GLIPR1L2 Missense_Mutation p.L40F 0.59 tolerated(0.22) possibly_damaging(0.708) TCGA-LL-A73Y-01 12 95911571 95911571 T C USP44 3'UTR 0.26 TCGA-LL-A73Y-01 13 111117807 111117807 C T COL4A2 Missense_Mutation p.T611M 0.15 possibly_damaging(0.638) TCGA-LL-A73Y-01 13 31034991 31034991 C G HMGB1 3'UTR 0.33 TCGA-LL-A73Y-01 13 32907401 32907401 G A BRCA2 Missense_Mutation p.D596N 0.17 tolerated(0.21) benign(0.02) TCGA-LL-A73Y-01 13 50108012 50108012 C G RCBTB1 3'UTR 0.53 TCGA-LL-A73Y-01 13 77641746 77641746 G T MYCBP2 Missense_Mutation p.T4104K 0.30 possibly_damaging(0.829) TCGA-LL-A73Y-01 14 32545065 32545065 A T ARHGAP5 5'Flank 0.11 TCGA-LL-A73Y-01 14 33014911 33014911 C G AKAP6 Missense_Mutation p.S351C 0.52 tolerated(0.2) possibly_damaging(0.759) TCGA-LL-A73Y-01 14 64152901 64152901 C T SGPP1 Silent p.R416R 0.09 TCGA-LL-A73Y-01 14 81372364 81372364 G C CEP128 Nonsense_Mutation p.S99* 0.53 TCGA-LL-A73Y-01 14 99737592 99737592 G A BCL11B 5'Flank 0.19 TCGA-LL-A73Y-01 15 34158248 34158248 T C RYR3 3'UTR 0.26 TCGA-LL-A73Y-01 15 44028625 44028625 C G RNU6-354P 5'Flank 0.43 TCGA-LL-A73Y-01 15 59942942 59942942 G C GTF2A2 Missense_Mutation p.Q35E 0.52 deleterious(0) benign(0.012) TCGA-LL-A73Y-01 15 65868842 65868842 C G PTPLAD1 3'UTR 0.52 TCGA-LL-A73Y-01 15 92706095 92706095 C G SLCO3A1 Silent p.V621V 0.54 TCGA-LL-A73Y-01 16 30205927 30205927 G C SULT1A3 5'Flank 0.25 TCGA-LL-A73Y-01 16 56642584 56642584 C T MT2A Missense_Mutation p.S6F 0.54 deleterious(0) possibly_damaging(0.788) TCGA-LL-A73Y-01 16 57100503 57100503 G C NLRC5 Missense_Mutation p.E1433D 0.56 tolerated(0.1) benign(0.026) TCGA-LL-A73Y-01 16 58585671 58585671 G C CNOT1 Missense_Mutation p.S1008C 0.41 deleterious(0.04) possibly_damaging(0.784) TCGA-LL-A73Y-01 16 67571385 67571385 G A FAM65A Intron 0.70 TCGA-LL-A73Y-01 16 78133612 78133612 G C WWOX 5'UTR 0.54 TCGA-LL-A73Y-01 16 84104213 84104213 C T MBTPS1 Missense_Mutation p.A588T 0.51 tolerated(0.48) benign(0.002) TCGA-LL-A73Y-01 16 89350728 89350728 T G ANKRD11 Missense_Mutation p.K741T 0.39 probably_damaging(0.932) TCGA-LL-A73Y-01 16 89350741 89350741 C G ANKRD11 Missense_Mutation p.D737H 0.41 possibly_damaging(0.67) TCGA-LL-A73Y-01 17 30498065 30498065 G T RHOT1 Missense_Mutation p.R14I 0.21 deleterious(0.03) possibly_damaging(0.504) TCGA-LL-A73Y-01 17 48560027 48560027 G C RSAD1 Missense_Mutation p.W288C 0.57 deleterious(0.02) possibly_damaging(0.497) TCGA-LL-A73Y-01 17 5032021 5032021 G C USP6 Intron 0.20 TCGA-LL-A73Y-01 17 56400707 56400707 C T BZRAP1 Silent p.E352E 0.36 TCGA-LL-A73Y-01 17 56400709 56400709 C T BZRAP1 Missense_Mutation p.E352K 0.34 deleterious(0.04) possibly_damaging(0.625) TCGA-LL-A73Y-01 17 60526594 60526594 A G METTL2A 3'UTR 0.06 TCGA-LL-A73Y-01 17 73238918 73238918 C T GGA3 Silent p.V201V 0.45 TCGA-LL-A73Y-01 17 74902154 74902154 C G MGAT5B Missense_Mutation p.R315G 0.75 tolerated(0.2) probably_damaging(0.912) TCGA-LL-A73Y-01 17 7577610 7577610 T A TP53 Splice_Site p.X225_splice 0.44 TCGA-LL-A73Y-01 17 77086763 77086763 C G RBFOX3 3'UTR 0.76 TCGA-LL-A73Y-01 17 7980042 7980042 C T ALOX12B Missense_Mutation p.R432Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-LL-A73Y-01 17 79817199 79817199 C G P4HB Silent p.L70L 0.48 TCGA-LL-A73Y-01 18 43319230 43319230 A T SLC14A1 Missense_Mutation p.M312L 0.56 tolerated(0.4) benign(0.001) TCGA-LL-A73Y-01 18 74962825 74962825 C T GALR1 Silent p.I107I 0.39 TCGA-LL-A73Y-01 18 9775323 9775323 C G RAB31 Missense_Mutation p.H30D 0.63 tolerated(0.07) benign(0.158) TCGA-LL-A73Y-01 19 1046893 1046895 AGA - ABCA7 In_Frame_Del p.K573del 0.24 TCGA-LL-A73Y-01 19 11121195 11121195 C T SMARCA4 Silent p.L754L 0.37 TCGA-LL-A73Y-01 19 12223098 12223098 C G ZNF788 Missense_Mutation p.H246D 0.45 deleterious(0) probably_damaging(0.937) TCGA-LL-A73Y-01 19 12766581 12766581 C T MAN2B1 Nonsense_Mutation p.W586* 0.42 TCGA-LL-A73Y-01 19 15299951 15299951 C T NOTCH3 Silent p.V409V 0.42 TCGA-LL-A73Y-01 19 18707752 18707752 G C CRLF1 Missense_Mutation p.Q269E 0.17 tolerated(0.14) possibly_damaging(0.472) TCGA-LL-A73Y-01 19 21132401 21132401 G A ZNF85 Missense_Mutation p.E361K 0.38 tolerated(1) benign(0) TCGA-LL-A73Y-01 19 39232449 39232449 G C CAPN12 Missense_Mutation p.F176L 0.38 deleterious(0) probably_damaging(0.999) TCGA-LL-A73Y-01 19 407162 407162 G A C2CD4C Silent p.S400S 0.46 TCGA-LL-A73Y-01 19 49547442 49547442 A G CGB5 5'UTR 0.05 TCGA-LL-A73Y-01 19 55824348 55824348 G A TMEM150B Missense_Mutation p.A194V 0.57 tolerated(0.56) benign(0.004) TCGA-LL-A73Y-01 19 55879650 55879650 C T IL11 Silent p.L119L 0.63 TCGA-LL-A73Y-01 19 55898167 55898167 C T RPL28 Intron 0.57 TCGA-LL-A73Y-01 19 58418850 58418850 G C ZNF417 3'UTR 0.60 TCGA-LL-A73Y-01 19 9361851 9361851 C G OR7E24 Silent p.V44V 0.43 TCGA-LL-A73Y-01 1 10093590 10093590 C G UBE4B 5'Flank 0.57 TCGA-LL-A73Y-01 1 101006254 101006254 A G GPR88 3'UTR 0.18 TCGA-LL-A73Y-01 1 101706284 101706284 G C S1PR1 3'UTR 0.37 TCGA-LL-A73Y-01 1 11174929 11174929 C G MTOR Missense_Mutation p.E2369Q 0.52 deleterious(0) probably_damaging(0.963) TCGA-LL-A73Y-01 1 112525267 112525267 G A KCND3 Missense_Mutation p.P28S 0.21 deleterious(0.02) benign(0) TCGA-LL-A73Y-01 1 118169045 118169045 T C FAM46C 3'UTR 0.48 TCGA-LL-A73Y-01 1 118502099 118502099 C - WDR3 3'UTR 0.21 TCGA-LL-A73Y-01 1 143465380 143465380 C T RP11-435B5.4 Intron 0.32 TCGA-LL-A73Y-01 1 151384185 151384185 C G POGZ Missense_Mutation p.E614D 0.15 deleterious(0.02) possibly_damaging(0.566) TCGA-LL-A73Y-01 1 151774815 151774815 G A LINGO4 Silent p.I122I 0.16 TCGA-LL-A73Y-01 1 152551984 152551984 G C LCE3D 3'UTR 0.21 TCGA-LL-A73Y-01 1 153727186 153727186 G C INTS3 Missense_Mutation p.E310Q 0.44 deleterious(0.02) benign(0.104) TCGA-LL-A73Y-01 1 153906649 153906649 C T DENND4B Missense_Mutation p.R968Q 0.34 tolerated(0.08) benign(0) TCGA-LL-A73Y-01 1 186310199 186310199 G C TPR Silent p.L1327L 0.17 TCGA-LL-A73Y-01 1 201022662 201022662 G A CACNA1S Silent p.V1240V 0.35 TCGA-LL-A73Y-01 1 201350485 201350485 G C LAD1 3'UTR 0.28 TCGA-LL-A73Y-01 1 204130437 204130437 C T REN Missense_Mutation p.R119H 0.41 deleterious(0.04) benign(0.369) TCGA-LL-A73Y-01 1 205030494 205030494 G C CNTN2 Missense_Mutation p.E307Q 0.14 deleterious(0.02) probably_damaging(0.977) TCGA-LL-A73Y-01 1 205271597 205271597 C T NUAK2 3'UTR 0.07 TCGA-LL-A73Y-01 1 209880339 209880339 T C HSD11B1 Missense_Mutation p.L128P 0.20 tolerated(0.28) benign(0.006) TCGA-LL-A73Y-01 1 231076263 231076263 C A TTC13 Missense_Mutation p.D238Y 0.14 tolerated(0.05) benign(0.325) TCGA-LL-A73Y-01 1 234565906 234565906 G C TARBP1 Missense_Mutation p.Q846E 0.46 tolerated(0.33) benign(0.11) TCGA-LL-A73Y-01 1 234566023 234566023 G A TARBP1 Nonsense_Mutation p.Q807* 0.43 TCGA-LL-A73Y-01 1 240408850 240408850 C A FMN2 Intron 0.10 TCGA-LL-A73Y-01 1 28975160 28975160 C T RNU11 RNA 0.42 TCGA-LL-A73Y-01 1 38338757 38338757 C T INPP5B Missense_Mutation p.E678K 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-LL-A73Y-01 1 41978905 41978905 C T HIVEP3 Missense_Mutation p.R1996Q 0.52 benign(0.003) TCGA-LL-A73Y-01 1 44056902 44056902 A G PTPRF Silent p.A403A 0.34 TCGA-LL-A73Y-01 1 44441772 44441772 G C ATP6V0B Missense_Mutation p.E43Q 0.43 tolerated(0.32) benign(0.02) TCGA-LL-A73Y-01 1 57044723 57044723 G A PPAP2B 5'UTR 0.06 TCGA-LL-A73Y-01 1 62902810 62902810 C T USP1 5'UTR 0.16 TCGA-LL-A73Y-01 1 66839823 66839823 G A PDE4B 3'UTR 0.11 TCGA-LL-A73Y-01 1 86342837 86342837 C G COL24A1 Missense_Mutation p.D1000H 0.37 deleterious(0.04) possibly_damaging(0.826) TCGA-LL-A73Y-01 20 30194161 30194161 G C ID1 3'UTR 0.14 TCGA-LL-A73Y-01 20 42090001 42090001 T G SRSF6 3'UTR 0.25 TCGA-LL-A73Y-01 20 47895224 47895224 A G ZNFX1 5'Flank 0.17 TCGA-LL-A73Y-01 21 27107257 27107257 C T ATP5J Missense_Mutation p.D4N 0.32 tolerated_low_confidence(0.18) benign(0.047) TCGA-LL-A73Y-01 21 40981507 40981507 T C C21orf88 Intron 0.25 TCGA-LL-A73Y-01 21 46306156 46306156 G C ITGB2 3'UTR 0.24 TCGA-LL-A73Y-01 21 46492031 46492031 C T ADARB1 5'Flank 0.27 TCGA-LL-A73Y-01 22 20457880 20457880 G A RIMBP3 Missense_Mutation p.A1141V 0.17 deleterious(0.03) probably_damaging(0.962) TCGA-LL-A73Y-01 22 21538074 21538074 C T FAM230B RNA 0.06 TCGA-LL-A73Y-01 22 30221126 30221126 G A ASCC2 Nonsense_Mutation p.R121* 0.33 TCGA-LL-A73Y-01 22 31059931 31059931 G A DUSP18 Silent p.L20L 0.22 TCGA-LL-A73Y-01 22 31059944 31059944 G C DUSP18 Nonsense_Mutation p.S16* 0.21 TCGA-LL-A73Y-01 22 31859948 31859948 G A EIF4ENIF1 Nonsense_Mutation p.R102* 0.28 TCGA-LL-A73Y-01 22 40257937 40257937 T A ENTHD1 Missense_Mutation p.E142V 0.31 deleterious(0.01) probably_damaging(0.941) TCGA-LL-A73Y-01 22 43563329 43563329 C G TTLL12 3'UTR 0.19 TCGA-LL-A73Y-01 2 100058831 100058831 C T REV1 Missense_Mutation p.E151K 0.64 tolerated(0.12) benign(0.091) TCGA-LL-A73Y-01 2 179604795 179604795 C T TTN Missense_Mutation p.E4389K 0.59 TCGA-LL-A73Y-01 2 180311339 180311339 C G ZNF385B Missense_Mutation p.E277Q 0.66 deleterious(0.02) probably_damaging(0.998) TCGA-LL-A73Y-01 2 201785003 201785003 C T ORC2 Missense_Mutation p.G470R 0.29 deleterious(0) probably_damaging(1) TCGA-LL-A73Y-01 2 24011411 24011411 G A ATAD2B Missense_Mutation p.S916L 0.38 deleterious(0) benign(0.034) TCGA-LL-A73Y-01 2 73170719 73170719 G C SFXN5 3'UTR 0.60 TCGA-LL-A73Y-01 3 129368279 129368279 A T TMCC1 3'UTR 0.09 TCGA-LL-A73Y-01 3 142751678 142751678 G C U2SURP Missense_Mutation p.D555H 0.25 tolerated(0.06) possibly_damaging(0.885) TCGA-LL-A73Y-01 3 151161532 151161532 G C IGSF10 Missense_Mutation p.H1735D 0.52 tolerated(0.21) possibly_damaging(0.451) TCGA-LL-A73Y-01 3 158310330 158310330 A T MLF1 Missense_Mutation p.H68L 0.19 tolerated(0.66) benign(0.008) TCGA-LL-A73Y-01 3 191098038 191098039 - A CCDC50 Frame_Shift_Ins p.L358Tfs*22 0.18 TCGA-LL-A73Y-01 3 63645405 63645405 G C SNTN Silent p.L50L 0.43 TCGA-LL-A73Y-01 3 97852149 97852149 C G OR5H1 Nonsense_Mutation p.S203* 0.23 TCGA-LL-A73Y-01 3 97852384 97852384 C G OR5H1 Missense_Mutation p.I281M 0.38 deleterious(0.01) probably_damaging(0.928) TCGA-LL-A73Y-01 4 142154903 142154903 T C ZNF330 Silent p.G241G 0.42 TCGA-LL-A73Y-01 4 170641688 170641688 T C CLCN3 3'UTR 0.26 TCGA-LL-A73Y-01 4 174235219 174235219 A G GALNT7 Silent p.K500K 0.48 TCGA-LL-A73Y-01 4 37446134 37446134 A C KIAA1239 Missense_Mutation p.T842P 0.60 tolerated(0.19) possibly_damaging(0.579) TCGA-LL-A73Y-01 4 39303965 39303965 C T RFC1 Missense_Mutation p.R824Q 0.50 tolerated(0.46) benign(0.002) TCGA-LL-A73Y-01 4 62937501 62937501 G A LPHN3 3'UTR 0.56 TCGA-LL-A73Y-01 5 102309897 102309897 G C PAM Missense_Mutation p.E414Q 0.32 tolerated(0.14) benign(0.203) TCGA-LL-A73Y-01 5 102309928 102309928 C A PAM Missense_Mutation p.A424D 0.32 tolerated(0.18) probably_damaging(0.996) TCGA-LL-A73Y-01 5 140391791 140391791 C A PCDHAC1 3'UTR 0.45 TCGA-LL-A73Y-01 5 171471957 171471957 C T STK10 Missense_Mutation p.E946K 0.48 deleterious(0) benign(0.1) TCGA-LL-A73Y-01 5 180651748 180651748 G C TRIM41 Missense_Mutation p.R250P 0.52 deleterious(0.04) probably_damaging(0.997) TCGA-LL-A73Y-01 5 38904108 38904108 T G OSMR Silent p.G372G 0.53 TCGA-LL-A73Y-01 5 65073358 65073358 G A NLN Silent p.Q185Q 0.52 TCGA-LL-A73Y-01 5 66462260 66462260 G C MAST4 Missense_Mutation p.R2418T 0.53 benign(0.273) TCGA-LL-A73Y-01 6 107980239 107980239 G C SOBP 3'UTR 0.28 TCGA-LL-A73Y-01 6 109688193 109688193 C T CD164 3'UTR 0.27 TCGA-LL-A73Y-01 6 112575217 112575217 C G LAMA4 Missense_Mutation p.D46H 0.39 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-LL-A73Y-01 6 129762073 129762073 G C LAMA2 Missense_Mutation p.K2066N 0.36 deleterious(0.02) benign(0.375) TCGA-LL-A73Y-01 6 147685247 147685247 C T STXBP5 Missense_Mutation p.S1009L 0.19 deleterious(0) benign(0.108) TCGA-LL-A73Y-01 6 15627674 15627674 C A DTNBP1 Silent p.A85A 0.35 TCGA-LL-A73Y-01 6 26032069 26032069 C G HIST1H3B Missense_Mutation p.E74Q 0.25 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-LL-A73Y-01 6 26285603 26285603 C T HIST1H4H Missense_Mutation p.G42D 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-LL-A73Y-01 6 26545747 26545747 A G HMGN4 3'UTR 0.23 TCGA-LL-A73Y-01 6 28200380 28200380 G T ZSCAN9 Missense_Mutation p.R254S 0.29 tolerated(0.33) benign(0.214) TCGA-LL-A73Y-01 6 28269199 28269199 G A PGBD1 Missense_Mutation p.R523K 0.20 deleterious(0.03) probably_damaging(0.994) TCGA-LL-A73Y-01 6 37299462 37299462 G C TBC1D22B 3'UTR 0.32 TCGA-LL-A73Y-01 6 43035051 43035051 A G KLC4 Intron 0.34 TCGA-LL-A73Y-01 6 53371728 53371728 C G GCLC Missense_Mutation p.E394Q 0.41 tolerated(0.18) possibly_damaging(0.756) TCGA-LL-A73Y-01 6 56418429 56418429 G A DST Missense_Mutation p.S2431L 0.12 benign(0.012) TCGA-LL-A73Y-01 6 572583 572583 C T EXOC2 Silent p.L460L 0.45 TCGA-LL-A73Y-01 6 656905 656905 C G HUS1B Missense_Mutation p.E14Q 0.54 tolerated(0.62) possibly_damaging(0.655) TCGA-LL-A73Y-01 7 101559394 101559394 G T CUX1 Splice_Site p.X22_splice 0.46 TCGA-LL-A73Y-01 7 102182021 102182021 C A RP11-514P8.7 Missense_Mutation p.Q280H 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LL-A73Y-01 7 123599594 123599594 C G SPAM1 Missense_Mutation p.I367M 0.50 deleterious(0.02) probably_damaging(0.949) TCGA-LL-A73Y-01 7 37890338 37890338 G A NME8 Splice_Site p.X66_splice 0.45 TCGA-LL-A73Y-01 7 40039076 40039076 A G CDK13 Missense_Mutation p.Y720C 0.48 deleterious(0) probably_damaging(0.989) TCGA-LL-A73Y-01 7 4899481 4899481 C T PAPOLB 3'UTR 0.29 TCGA-LL-A73Y-01 7 94038700 94038700 C T COL1A2 Missense_Mutation p.L287F 0.49 unknown(0) TCGA-LL-A73Y-01 7 97921880 97921880 C T BAIAP2L1 3'UTR 0.59 TCGA-LL-A73Y-01 8 101930975 101930975 G C YWHAZ 3'UTR 0.30 TCGA-LL-A73Y-01 8 104312329 104312329 G C FZD6 5'UTR 0.59 TCGA-LL-A73Y-01 8 134145733 134145733 G C TG Missense_Mutation p.E2673Q 0.25 tolerated(0.15) benign(0.423) TCGA-LL-A73Y-01 8 145150783 145150783 G C CYC1 Silent p.V59V 0.58 TCGA-LL-A73Y-01 8 145948471 145948471 G C ZNF251 Missense_Mutation p.L192V 0.27 tolerated(0.5) benign(0.364) TCGA-LL-A73Y-01 8 21984612 21984612 T C HR Missense_Mutation p.E448G 0.27 tolerated(0.19) benign(0.023) TCGA-LL-A73Y-01 8 41387727 41387727 C T GINS4 Silent p.T2T 0.23 TCGA-LL-A73Y-01 8 41788202 41788202 G A KAT6A 3'UTR 0.19 TCGA-LL-A73Y-01 8 61778159 61778159 G A CHD7 Silent p.P2887P 0.31 TCGA-LL-A73Y-01 8 72964943 72964943 G C TRPA1 Missense_Mutation p.L568V 0.48 deleterious(0) possibly_damaging(0.658) TCGA-LL-A73Y-01 8 86089883 86089883 C G E2F5 Silent p.L76L 0.54 TCGA-LL-A73Y-01 8 95655545 95655545 G A ESRP1 Silent p.V92V 0.51 TCGA-LL-A73Y-01 8 95655552 95655552 G A ESRP1 Missense_Mutation p.E95K 0.51 tolerated(0.21) possibly_damaging(0.65) TCGA-LL-A73Y-01 9 35683159 35683159 G C TPM2 Intron 0.37 TCGA-LL-A73Y-01 9 91093108 91093108 C G SPIN1 3'UTR 0.51 TCGA-LL-A73Y-01 9 91093188 91093188 C T SPIN1 3'UTR 0.52 TCGA-LL-A73Y-01 X 19410164 19410164 G A MAP3K15 Missense_Mutation p.S796L 0.33 deleterious(0) probably_damaging(0.998) TCGA-LL-A73Z-01 10 15885216 15885216 C - FAM188A Frame_Shift_Del p.C77Ffs*18 0.14 TCGA-LL-A73Z-01 10 26534920 26534920 G A GAD2 Missense_Mutation p.C304Y 0.10 deleterious(0) possibly_damaging(0.862) TCGA-LL-A73Z-01 10 64572714 64572714 C G EGR2 3'UTR 0.27 TCGA-LL-A73Z-01 10 89720711 89720712 - A PTEN Frame_Shift_Ins p.V290Sfs*8 0.24 TCGA-LL-A73Z-01 11 13732282 13732282 G C FAR1 Missense_Mutation p.L196F 0.21 deleterious(0) possibly_damaging(0.775) TCGA-LL-A73Z-01 11 20141147 20141148 - GGT NAV2 3'Flank 0.10 TCGA-LL-A73Z-01 11 294169 294169 C T ATHL1 Missense_Mutation p.A594V 0.24 deleterious(0.05) possibly_damaging(0.788) TCGA-LL-A73Z-01 11 4929283 4929283 A T OR51A7 Silent p.A228A 0.12 TCGA-LL-A73Z-01 14 106436196 106436196 C T ADAM6 RNA 0.22 TCGA-LL-A73Z-01 14 23745320 23745320 A T HOMEZ Missense_Mutation p.S373T 0.11 deleterious(0.03) possibly_damaging(0.844) TCGA-LL-A73Z-01 14 52471944 52471944 A G NID2 3'UTR 0.14 TCGA-LL-A73Z-01 14 71479813 71479813 G A PCNX Missense_Mutation p.E964K 0.15 tolerated(0.15) benign(0.354) TCGA-LL-A73Z-01 15 66727476 66727476 G A MAP2K1 Silent p.K64K 0.12 TCGA-LL-A73Z-01 15 99482490 99482490 G A IGF1R Missense_Mutation p.A1120T 0.19 deleterious(0) probably_damaging(0.966) TCGA-LL-A73Z-01 17 75398596 75398596 G A SEPT9 Missense_Mutation p.A178T 0.18 tolerated_low_confidence(0.46) benign(0.05) TCGA-LL-A73Z-01 18 2610795 2610795 C A NDC80 Silent p.R576R 0.19 TCGA-LL-A73Z-01 18 6958606 6958606 A C LAMA1 Missense_Mutation p.L2612V 0.12 tolerated(0.07) benign(0.232) TCGA-LL-A73Z-01 19 10070426 10070426 T A COL5A3 3'UTR 0.07 TCGA-LL-A73Z-01 19 13476257 13476257 T C CACNA1A Missense_Mutation p.M220V 0.17 benign(0.14) TCGA-LL-A73Z-01 19 49714008 49714008 T G TRPM4 Missense_Mutation p.W1124G 0.11 deleterious(0) probably_damaging(1) TCGA-LL-A73Z-01 19 58718482 58718482 G A ZNF274 Missense_Mutation p.R217Q 0.28 tolerated(0.12) benign(0.024) TCGA-LL-A73Z-01 1 10720070 10720070 A T CASZ1 Missense_Mutation p.N343K 0.14 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-LL-A73Z-01 1 155630404 155630404 G C YY1AP1 Missense_Mutation p.P571A 0.10 tolerated_low_confidence(0.3) benign(0.017) TCGA-LL-A73Z-01 1 167798607 167798607 C T ADCY10 Nonsense_Mutation p.W1216* 0.11 TCGA-LL-A73Z-01 1 235658072 235658072 G A B3GALNT2 Missense_Mutation p.A60V 0.14 deleterious(0) probably_damaging(0.98) TCGA-LL-A73Z-01 1 44010721 44010721 G A PTPRF 5'UTR 0.17 TCGA-LL-A73Z-01 1 60314851 60314853 AAG - HOOK1 In_Frame_Del p.E414del 0.10 TCGA-LL-A73Z-01 20 18548142 18548142 C T LINC00493 RNA 0.10 TCGA-LL-A73Z-01 20 42695438 42695438 C T TOX2 Silent p.T475T 0.16 TCGA-LL-A73Z-01 20 45131474 45131474 A C ZNF334 Missense_Mutation p.F168L 0.24 tolerated(0.59) benign(0.005) TCGA-LL-A73Z-01 21 32127503 32127503 C T KRTAP21-1 Missense_Mutation p.C65Y 0.11 deleterious_low_confidence(0) unknown(0) TCGA-LL-A73Z-01 21 45165991 45165991 C T PDXK Silent p.D121D 0.17 TCGA-LL-A73Z-01 22 18844561 18844561 T C BCRP7 Intron 0.15 TCGA-LL-A73Z-01 22 51170201 51170201 C T SHANK3 3'UTR 0.11 TCGA-LL-A73Z-01 2 167327211 167327211 A C SCN7A Missense_Mutation p.I193S 0.04 deleterious(0) possibly_damaging(0.832) TCGA-LL-A73Z-01 2 235962798 235962798 G A SH3BP4 3'UTR 0.22 TCGA-LL-A73Z-01 2 85770294 85770294 G A MAT2A Intron 0.11 TCGA-LL-A73Z-01 2 88890428 88890428 C A EIF2AK3 Missense_Mutation p.A304S 0.12 tolerated(0.4) benign(0.006) TCGA-LL-A73Z-01 2 96071343 96071345 CTG - FAHD2A In_Frame_Del p.L14del 0.14 TCGA-LL-A73Z-01 3 39170691 39170691 G A TTC21A Missense_Mutation p.M682I 0.18 tolerated(0.2) benign(0.005) TCGA-LL-A73Z-01 3 78680389 78680390 - C ROBO1 Frame_Shift_Ins p.A1183Gfs*17 0.11 TCGA-LL-A73Z-01 4 175231043 175231043 C G CEP44 Missense_Mutation p.L241V 0.07 deleterious(0.04) possibly_damaging(0.603) TCGA-LL-A73Z-01 4 72437261 72437261 A T SLC4A4 3'UTR 0.10 TCGA-LL-A73Z-01 5 101834433 101834433 G A SLCO6A1 Missense_Mutation p.P39L 0.11 tolerated(0.14) benign(0) TCGA-LL-A73Z-01 5 140554566 140554566 C T PCDHB7 Missense_Mutation p.A717V 0.09 deleterious_low_confidence(0.02) benign(0.18) TCGA-LL-A73Z-01 5 36686556 36686556 T G SLC1A3 3'UTR 0.14 TCGA-LL-A73Z-01 6 169641958 169641958 C T THBS2 Missense_Mutation p.E264K 0.15 tolerated_low_confidence(0.42) benign(0.102) TCGA-LL-A73Z-01 6 169648697 169648697 C T THBS2 Missense_Mutation p.V142I 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-LL-A73Z-01 6 43470349 43470349 T A TJAP1 Silent p.I127I 0.13 TCGA-LL-A73Z-01 8 133024987 133024987 A - EFR3A 3'UTR 0.12 TCGA-LL-A73Z-01 8 32621621 32621621 G A NRG1 Missense_Mutation p.A547T 0.23 tolerated(0.29) benign(0.003) TCGA-LL-A73Z-01 X 101858522 101858522 A G ARMCX5 Missense_Mutation p.N485D 0.05 tolerated(0.05) possibly_damaging(0.575) TCGA-LL-A73Z-01 X 142717165 142717165 G A SLITRK4 Missense_Mutation p.P587L 0.19 tolerated(0.17) possibly_damaging(0.557) TCGA-LL-A73Z-01 X 16672619 16672619 A T S100G Missense_Mutation p.K76M 0.16 tolerated(0.09) probably_damaging(0.947) TCGA-LL-A73Z-01 X 48544208 48544208 A T WAS Missense_Mutation p.N149I 0.11 deleterious(0.03) benign(0.427) TCGA-LL-A740-01 10 120792820 120792820 T C NANOS1 3'UTR 0.22 TCGA-LL-A740-01 10 5772956 5772956 G A FAM208B Missense_Mutation p.A332T 0.26 tolerated(0.21) benign(0.008) TCGA-LL-A740-01 10 75563492 75563492 A T NDST2 Missense_Mutation p.F661Y 0.08 deleterious(0.03) probably_damaging(1) TCGA-LL-A740-01 10 86223766 86223766 A T CCSER2 Silent p.V714V 0.27 TCGA-LL-A740-01 11 123994161 123994161 C T VWA5A Missense_Mutation p.P340L 0.42 deleterious(0.01) possibly_damaging(0.719) TCGA-LL-A740-01 11 22279280 22279280 G A ANO5 Missense_Mutation p.G463R 0.07 tolerated(0.19) possibly_damaging(0.629) TCGA-LL-A740-01 11 47346252 47346252 G A MADD Intron 0.27 TCGA-LL-A740-01 11 534288 534288 C T HRAS Missense_Mutation p.G12D 0.41 deleterious(0) possibly_damaging(0.56) TCGA-LL-A740-01 11 62038418 62038418 G A SCGB2A2 Missense_Mutation p.E41K 0.18 deleterious(0.05) benign(0.041) TCGA-LL-A740-01 12 123892053 123892054 AG - SETD8 Frame_Shift_Del p.E289Dfs*46 0.24 TCGA-LL-A740-01 12 131471744 131471744 C A GPR133 Missense_Mutation p.R199S 0.13 tolerated(0.09) benign(0.072) TCGA-LL-A740-01 12 55423489 55423489 T C NEUROD4 3'UTR 0.12 TCGA-LL-A740-01 13 111955531 111955531 G A ARHGEF7 3'UTR 0.48 TCGA-LL-A740-01 13 98645202 98645202 G C IPO5 Missense_Mutation p.E260D 0.12 tolerated(0.99) benign(0.101) TCGA-LL-A740-01 15 43820375 43820375 C T MAP1A Missense_Mutation p.S2235L 0.34 probably_damaging(0.997) TCGA-LL-A740-01 15 79590376 79590376 T G ANKRD34C 3'UTR 0.12 TCGA-LL-A740-01 16 437086 437086 G T Z97634.3 Intron 0.26 TCGA-LL-A740-01 16 4658971 4658971 A T UBALD1 3'UTR 0.44 TCGA-LL-A740-01 16 4815727 4815727 T A ZNF500 Missense_Mutation p.T85S 0.16 tolerated(0.16) benign(0.032) TCGA-LL-A740-01 16 68265536 68265536 A C ESRP2 Missense_Mutation p.I454S 0.29 tolerated(0.11) possibly_damaging(0.547) TCGA-LL-A740-01 17 37882050 37882050 A G ERBB2 Missense_Mutation p.E939G 0.12 deleterious(0) probably_damaging(0.977) TCGA-LL-A740-01 17 48151583 48151583 G T ITGA3 Missense_Mutation p.D441Y 0.24 deleterious(0) probably_damaging(1) TCGA-LL-A740-01 17 57895072 57895072 G A VMP1 Splice_Site p.X305_splice 0.09 TCGA-LL-A740-01 17 61556383 61556383 A T ACE Missense_Mutation p.S145C 0.20 deleterious(0.01) possibly_damaging(0.707) TCGA-LL-A740-01 17 76567099 76567099 G A DNAH17 Silent p.N283N 0.30 TCGA-LL-A740-01 18 47340248 47340248 A G ACAA2 5'UTR 0.36 TCGA-LL-A740-01 19 42341402 42341402 A T LYPD4 Missense_Mutation p.F186I 0.18 tolerated(0.14) benign(0.233) TCGA-LL-A740-01 1 149875545 149875545 G T SV2A 3'UTR 0.18 TCGA-LL-A740-01 1 159752050 159752050 C T DUSP23 Silent p.I125I 0.24 TCGA-LL-A740-01 1 160054219 160054219 C T KCNJ9 Silent p.P133P 0.24 TCGA-LL-A740-01 1 166904688 166904688 C A ILDR2 Missense_Mutation p.A244S 0.21 tolerated(0.44) benign(0.027) TCGA-LL-A740-01 1 169497165 169497165 G A F5 Missense_Mutation p.P1863S 0.10 deleterious(0.04) possibly_damaging(0.682) TCGA-LL-A740-01 1 175067680 175067680 G A TNN Missense_Mutation p.A690T 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-LL-A740-01 1 17948424 17948424 G - ARHGEF10L Frame_Shift_Del p.K336Nfs*11 0.26 TCGA-LL-A740-01 20 2635484 2635484 C T NOP56 Missense_Mutation p.R154C 0.31 deleterious(0) probably_damaging(0.996) TCGA-LL-A740-01 20 32660065 32660065 A G RALY Missense_Mutation p.Y62C 0.22 deleterious(0.04) benign(0.33) TCGA-LL-A740-01 22 41575642 41575642 T C EP300 3'UTR 0.22 TCGA-LL-A740-01 2 102781430 102781437 TAAGGTGG - IL1R1 Frame_Shift_Del p.K87Gfs*19 0.17 TCGA-LL-A740-01 2 136473189 136473189 C T R3HDM1 Silent p.L901L 0.25 TCGA-LL-A740-01 2 188210128 188210128 C A CALCRL 3'UTR 0.16 TCGA-LL-A740-01 2 27592346 27592348 TTC - EIF2B4 In_Frame_Del p.K70del 0.29 TCGA-LL-A740-01 2 65561810 65561811 - T SPRED2 Frame_Shift_Ins p.T101Nfs*7 0.28 TCGA-LL-A740-01 2 74474314 74474314 G A SLC4A5 Silent p.T636T 0.28 TCGA-LL-A740-01 2 99136430 99136430 C G INPP4A 5'UTR 0.24 TCGA-LL-A740-01 3 113378671 113378671 G A KIAA2018 Nonsense_Mutation p.Q620* 0.26 TCGA-LL-A740-01 3 121712217 121712217 C T ILDR1 Missense_Mutation p.G460E 0.32 tolerated(0.75) benign(0.004) TCGA-LL-A740-01 3 122630890 122630890 T G SEMA5B Missense_Mutation p.S1029R 0.43 deleterious(0) benign(0.361) TCGA-LL-A740-01 3 129695649 129695649 G C TRH Missense_Mutation p.A107P 0.12 tolerated(0.18) probably_damaging(0.912) TCGA-LL-A740-01 3 174951911 174951911 C A NAALADL2 Missense_Mutation p.P246T 0.30 tolerated(0.06) benign(0.143) TCGA-LL-A740-01 3 196792187 196792187 T C DLG1 Missense_Mutation p.Y811C 0.22 deleterious(0) probably_damaging(1) TCGA-LL-A740-01 3 49395274 49395275 - T GPX1 Intron 0.25 TCGA-LL-A740-01 3 51458028 51458028 C T VPRBP Missense_Mutation p.R370H 0.25 deleterious(0) benign(0.347) TCGA-LL-A740-01 3 62355441 62355441 G A FEZF2 3'UTR 0.23 TCGA-LL-A740-01 4 153273859 153273859 C T FBXW7 Intron 0.29 TCGA-LL-A740-01 4 88989140 88989140 G A PKD2 Missense_Mutation p.D817N 0.21 tolerated(0.16) probably_damaging(0.998) TCGA-LL-A740-01 5 179563600 179563600 G A RASGEF1C Intron 0.25 TCGA-LL-A740-01 5 67588992 67588992 T C PIK3R1 Silent p.S361S 0.30 TCGA-LL-A740-01 5 67591104 67591115 TTAAACCAGACC - PIK3R1 In_Frame_Del p.K567_L570del 0.23 TCGA-LL-A740-01 6 108582065 108582065 C T SNX3 Missense_Mutation p.A21T 0.09 tolerated(0.13) benign(0.237) TCGA-LL-A740-01 6 32188569 32188569 C T NOTCH4 Missense_Mutation p.D296N 0.37 tolerated(1) benign(0.002) TCGA-LL-A740-01 6 43147171 43147171 G A SRF 3'UTR 0.09 TCGA-LL-A740-01 6 45870754 45870754 G A CLIC5 3'UTR 0.18 TCGA-LL-A740-01 6 51484268 51484268 A T PKHD1 Missense_Mutation p.L3946M 0.63 tolerated_low_confidence(0.07) benign(0.332) TCGA-LL-A740-01 6 74475872 74475891 TTGAAGGTGCCGTCTGTTTC - CD109 Splice_Site p.X443_splice 0.15 TCGA-LL-A740-01 7 100839341 100839341 G A MOGAT3 Silent p.T304T 0.09 TCGA-LL-A740-01 7 20824314 20824314 G A SP8 Silent p.H374H 0.29 TCGA-LL-A740-01 7 23509646 23509646 C T IGF2BP3 Silent p.P28P 0.08 TCGA-LL-A740-01 8 12881377 12881378 CT - KIAA1456 3'UTR 0.48 TCGA-LL-A740-01 8 2796208 2796208 C G CSMD1 Missense_Mutation p.A3532P 0.09 probably_damaging(0.999) TCGA-LL-A740-01 9 100618384 100618384 C T FOXE1 3'UTR 0.25 TCGA-LL-A740-01 9 113170641 113170641 G A SVEP1 Silent p.F2413F 0.19 TCGA-LL-A740-01 9 137801786 137801786 T C FCN1 Missense_Mutation p.Y280C 0.22 deleterious(0) probably_damaging(0.999) TCGA-LL-A740-01 9 35735121 35735121 C T CREB3 Silent p.L151L 0.26 TCGA-LL-A740-01 X 136112553 136112553 G A GPR101 Silent p.V427V 0.42 TCGA-LL-A740-01 X 136113781 136113781 C T GPR101 Missense_Mutation p.C18Y 0.24 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-LL-A740-01 X 153295512 153295512 A G MECP2 3'Flank 0.17 TCGA-LL-A740-01 X 49050741 49050741 G T SYP Nonsense_Mutation p.S102* 0.18 TCGA-LL-A7SZ-01 10 37414830 37414830 C T ANKRD30A 5'UTR 0.16 TCGA-LL-A7SZ-01 10 96253129 96253129 C T TBC1D12 Missense_Mutation p.P407S 0.15 deleterious(0) probably_damaging(0.998) TCGA-LL-A7SZ-01 11 104899872 104899872 C T CASP1 Missense_Mutation p.A329T 0.20 deleterious(0.05) probably_damaging(0.929) TCGA-LL-A7SZ-01 11 117031874 117031874 T G PAFAH1B2 Missense_Mutation p.L62R 0.13 tolerated(0.06) benign(0.367) TCGA-LL-A7SZ-01 11 126294431 126294431 C T KIRREL3 3'UTR 0.31 TCGA-LL-A7SZ-01 11 55659176 55659176 C T TRIM51 3'UTR 0.17 TCGA-LL-A7SZ-01 11 68701309 68701309 C T IGHMBP2 Missense_Mutation p.L489F 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-LL-A7SZ-01 12 56845157 56845157 T A MIP Missense_Mutation p.R233S 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-LL-A7SZ-01 12 63087738 63087738 A T PPM1H Missense_Mutation p.L372H 0.14 deleterious(0) probably_damaging(1) TCGA-LL-A7SZ-01 12 96059655 96059655 G A NTN4 Nonsense_Mutation p.R561* 0.12 TCGA-LL-A7SZ-01 12 96348751 96348751 A G AMDHD1 Missense_Mutation p.K103E 0.10 deleterious(0) possibly_damaging(0.896) TCGA-LL-A7SZ-01 13 31034821 31034821 A G HMGB1 3'UTR 0.14 TCGA-LL-A7SZ-01 14 100800267 100800267 A G WARS 3'UTR 0.13 TCGA-LL-A7SZ-01 15 39876502 39876502 C T THBS1 Missense_Mutation p.T302I 0.20 tolerated(0.05) benign(0.058) TCGA-LL-A7SZ-01 17 10397924 10397924 G A MYH1 Missense_Mutation p.R1845C 0.43 deleterious(0.02) probably_damaging(0.971) TCGA-LL-A7SZ-01 17 56676727 56676727 A G TEX14 Missense_Mutation p.M666T 0.60 tolerated(0.65) benign(0.01) TCGA-LL-A7SZ-01 17 67075135 67075135 G T ABCA6 Silent p.L1611L 0.19 TCGA-LL-A7SZ-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.26 deleterious(0) probably_damaging(0.997) TCGA-LL-A7SZ-01 18 45364312 45364312 C T SMAD2 3'UTR 0.44 TCGA-LL-A7SZ-01 18 51013174 51013174 G C DCC Silent p.V1248V 0.10 TCGA-LL-A7SZ-01 19 13041486 13041486 G A FARSA Silent p.S75S 0.17 TCGA-LL-A7SZ-01 19 19906260 19906260 G T ZNF506 Missense_Mutation p.Q146K 0.14 tolerated(0.06) possibly_damaging(0.601) TCGA-LL-A7SZ-01 19 37130351 37130351 T C ZNF461 Missense_Mutation p.K299R 0.10 tolerated(0.18) probably_damaging(0.974) TCGA-LL-A7SZ-01 19 37642659 37642659 T G ZNF585A Silent p.G659G 0.20 TCGA-LL-A7SZ-01 19 40521586 40521586 A C ZNF546 Missense_Mutation p.K803N 0.13 deleterious(0.03) possibly_damaging(0.758) TCGA-LL-A7SZ-01 19 40721024 40721024 A G MAP3K10 Missense_Mutation p.D897G 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-LL-A7SZ-01 19 50461582 50461582 C T SIGLEC11 Missense_Mutation p.V537I 0.11 tolerated(0.32) benign(0.086) TCGA-LL-A7SZ-01 1 117661331 117661331 T C TRIM45 Missense_Mutation p.S183G 0.14 tolerated(0.57) benign(0.003) TCGA-LL-A7SZ-01 1 1275791 1275791 C T DVL1 Missense_Mutation p.R233Q 0.08 deleterious(0.02) possibly_damaging(0.776) TCGA-LL-A7SZ-01 1 155629834 155629834 C A YY1AP1 Missense_Mutation p.V761L 0.11 tolerated_low_confidence(0.13) benign(0.065) TCGA-LL-A7SZ-01 1 183093841 183093841 G A LAMC1 Missense_Mutation p.R826H 0.18 tolerated(0.14) benign(0.013) TCGA-LL-A7SZ-01 1 186076030 186076030 A T HMCN1 Silent p.G3595G 0.30 TCGA-LL-A7SZ-01 1 19244904 19244904 G A IFFO2 Silent p.C305C 0.22 TCGA-LL-A7SZ-01 20 13698023 13698023 C T ESF1 Missense_Mutation p.D752N 0.27 tolerated(0.24) probably_damaging(0.996) TCGA-LL-A7SZ-01 20 13698063 13698063 C A ESF1 Missense_Mutation p.K738N 0.25 deleterious(0) probably_damaging(0.994) TCGA-LL-A7SZ-01 20 35282042 35282042 C T NDRG3 Missense_Mutation p.G337S 0.11 tolerated(1) benign(0.039) TCGA-LL-A7SZ-01 20 35766259 35766259 C T MROH8 Missense_Mutation p.D562N 0.10 tolerated(0.06) benign(0.316) TCGA-LL-A7SZ-01 20 36954682 36954682 C T BPI Missense_Mutation p.P341S 0.11 deleterious(0) probably_damaging(0.993) TCGA-LL-A7SZ-01 20 36954734 36954734 C G BPI Missense_Mutation p.S358C 0.13 deleterious(0.03) possibly_damaging(0.9) TCGA-LL-A7SZ-01 20 9440326 9440326 G A PLCB4 Missense_Mutation p.M1027I 0.26 tolerated(0.17) benign(0.041) TCGA-LL-A7SZ-01 20 9440453 9440453 G A PLCB4 Missense_Mutation p.D1070N 0.27 deleterious(0) benign(0.311) TCGA-LL-A7SZ-01 21 46311861 46311861 C T ITGB2 Silent p.S425S 0.14 TCGA-LL-A7SZ-01 22 19164144 19164144 C T SLC25A1 Missense_Mutation p.A232T 0.17 deleterious(0.03) possibly_damaging(0.581) TCGA-LL-A7SZ-01 2 100266091 100266091 T A AFF3 Missense_Mutation p.D419V 0.25 tolerated(0.18) probably_damaging(0.999) TCGA-LL-A7SZ-01 2 112854701 112854701 T A TMEM87B Missense_Mutation p.F395L 0.12 deleterious(0.03) probably_damaging(0.959) TCGA-LL-A7SZ-01 2 114258589 114258589 G A FOXD4L1 3'UTR 0.38 TCGA-LL-A7SZ-01 2 162481041 162481041 G T SLC4A10 Missense_Mutation p.D5Y 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-LL-A7SZ-01 2 200213632 200213632 G A SATB2 Missense_Mutation p.A322V 0.17 deleterious(0) possibly_damaging(0.878) TCGA-LL-A7SZ-01 2 215798886 215798886 G A ABCA12 Silent p.V2532V 0.12 TCGA-LL-A7SZ-01 2 222321392 222321392 G A EPHA4 Missense_Mutation p.A515V 0.08 tolerated(0.06) probably_damaging(0.983) TCGA-LL-A7SZ-01 2 38295069 38295069 G A CYP1B1 3'UTR 0.15 TCGA-LL-A7SZ-01 2 39006227 39006227 G T GEMIN6 Missense_Mutation p.G32V 0.16 deleterious(0) probably_damaging(1) TCGA-LL-A7SZ-01 3 137483801 137483801 G A SOX14 Missense_Mutation p.D59N 0.12 deleterious(0) probably_damaging(0.991) TCGA-LL-A7SZ-01 3 71005651 71005651 A T FOXP1 3'Flank 0.11 TCGA-LL-A7SZ-01 4 119161686 119161686 G A NDST3 Missense_Mutation p.R709Q 0.21 deleterious(0.04) probably_damaging(0.98) TCGA-LL-A7SZ-01 4 6588816 6588816 T G MAN2B2 Missense_Mutation p.L162R 0.13 tolerated(0.06) probably_damaging(0.923) TCGA-LL-A7SZ-01 5 140264121 140264121 G A PCDHA13 Silent p.P756P 0.37 TCGA-LL-A7SZ-01 5 140890670 140890670 A G PCDHGB6 Missense_Mutation p.K908R 0.38 deleterious(0) benign(0.375) TCGA-LL-A7SZ-01 5 179150684 179150684 C T CANX Silent p.I474I 0.11 TCGA-LL-A7SZ-01 5 78376669 78376669 G A BHMT2 Missense_Mutation p.A140T 0.21 tolerated(0.1) benign(0.008) TCGA-LL-A7SZ-01 6 117869539 117869539 C G DCBLD1 Intron 0.14 TCGA-LL-A7SZ-01 8 38034545 38034545 G C BAG4 Missense_Mutation p.R53P 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LL-A7SZ-01 8 77768393 77768393 A G ZFHX4 Missense_Mutation p.Q3079R 0.15 probably_damaging(0.92) TCGA-LL-A7SZ-01 8 95686734 95686734 T C ESRP1 Missense_Mutation p.C551R 0.05 tolerated(0.24) benign(0.026) TCGA-LL-A7SZ-01 9 117103916 117103916 G A AKNA Missense_Mutation p.P1322S 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-LL-A7SZ-01 9 138235970 138235970 A G C9orf62 Missense_Mutation p.H59R 0.29 tolerated_low_confidence(1) benign(0.402) TCGA-LL-A7SZ-01 9 141006877 141006877 C T CACNA1B Missense_Mutation p.A1819V 0.16 deleterious(0.02) probably_damaging(0.93) TCGA-LL-A7SZ-01 9 77407541 77407541 G A TRPM6 Missense_Mutation p.T846M 0.13 deleterious(0) probably_damaging(0.999) TCGA-LL-A7SZ-01 X 152225466 152225466 G T PNMA3 Silent p.R18R 0.31 TCGA-LL-A7SZ-01 X 153295402 153295402 C T MECP2 3'Flank 0.13 TCGA-LL-A7SZ-01 X 153296354 153296354 G A MECP2 Missense_Mutation p.R321W 0.11 deleterious(0) probably_damaging(0.997) TCGA-LL-A7SZ-01 X 19725046 19725046 C T SH3KBP1 Missense_Mutation p.D115N 0.10 deleterious(0) probably_damaging(1) TCGA-LL-A7SZ-01 X 29301223 29301223 A C IL1RAPL1 Missense_Mutation p.D84A 0.14 deleterious(0) possibly_damaging(0.449) TCGA-LL-A7SZ-01 X 48819348 48819348 G C KCND1 3'UTR 0.10 TCGA-LL-A7SZ-01 X 57021145 57021145 T A SPIN3 Missense_Mutation p.N79I 0.09 deleterious(0) probably_damaging(1) TCGA-LL-A7T0-01 10 131640503 131640503 G A EBF3 Missense_Mutation p.R408C 0.54 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-LL-A7T0-01 10 92680800 92680800 C G ANKRD1 5'UTR 0.16 TCGA-LL-A7T0-01 11 12966007 12966007 G T TEAD1 3'Flank 0.47 TCGA-LL-A7T0-01 11 45948338 45948338 G A GYLTL1B Missense_Mutation p.R414H 0.15 deleterious(0) probably_damaging(0.999) TCGA-LL-A7T0-01 11 62295499 62295499 T C AHNAK Silent p.K2130K 0.72 TCGA-LL-A7T0-01 11 76061194 76061194 A C PRKRIR 3'UTR 0.20 TCGA-LL-A7T0-01 12 12251974 12251974 C G BCL2L14 3'UTR 0.24 TCGA-LL-A7T0-01 12 129028624 129028624 G A TMEM132C Missense_Mutation p.R366H 0.25 tolerated(0.05) probably_damaging(0.91) TCGA-LL-A7T0-01 12 56431851 56431851 C T IKZF4 3'UTR 0.06 TCGA-LL-A7T0-01 12 72013718 72013718 G A ZFC3H1 Silent p.F1679F 0.18 TCGA-LL-A7T0-01 12 9092335 9092335 G C PHC1 3'UTR 0.32 TCGA-LL-A7T0-01 13 75863099 75863099 G A TBC1D4 Nonsense_Mutation p.Q1212* 0.19 TCGA-LL-A7T0-01 14 100826972 100826972 T C WARS Missense_Mutation p.K114R 0.26 tolerated(0.18) benign(0.007) TCGA-LL-A7T0-01 14 105070823 105070823 C T TMEM179 Missense_Mutation p.A86T 0.17 tolerated(0.05) benign(0.048) TCGA-LL-A7T0-01 14 21161786 21161786 G A ANG Silent p.P21P 0.20 TCGA-LL-A7T0-01 14 31091668 31091668 G T SCFD1 Intron 0.29 TCGA-LL-A7T0-01 14 94752453 94752453 C G SERPINA10 Missense_Mutation p.V379L 0.18 deleterious(0.05) benign(0.025) TCGA-LL-A7T0-01 15 41226839 41226839 G T DLL4 Missense_Mutation p.G315V 0.35 deleterious(0) probably_damaging(1) TCGA-LL-A7T0-01 15 44069305 44069305 C T ELL3 5'UTR 0.13 TCGA-LL-A7T0-01 15 44158353 44158353 G T WDR76 Silent p.L548L 0.38 TCGA-LL-A7T0-01 15 65347537 65347537 C A RASL12 Silent p.L167L 0.15 TCGA-LL-A7T0-01 15 73043925 73043925 C T ADPGK 3'UTR 0.32 TCGA-LL-A7T0-01 15 78474828 78474828 C T ACSBG1 Missense_Mutation p.V292M 0.35 deleterious(0) probably_damaging(0.982) TCGA-LL-A7T0-01 16 822979 822979 G A MSLNL Missense_Mutation p.R736C 0.19 benign(0.005) TCGA-LL-A7T0-01 17 11461437 11461437 G A SHISA6 Missense_Mutation p.R491H 0.53 tolerated(0.8) benign(0.01) TCGA-LL-A7T0-01 17 1839017 1839017 A G RTN4RL1 3'UTR 0.20 TCGA-LL-A7T0-01 17 48768567 48768567 A G ABCC3 3'UTR 0.47 TCGA-LL-A7T0-01 19 55665540 55665540 C T TNNI3 Missense_Mutation p.R136Q 0.27 tolerated(0.17) possibly_damaging(0.78) TCGA-LL-A7T0-01 19 56001671 56001671 G A SSC5D Missense_Mutation p.R161H 0.16 benign(0.012) TCGA-LL-A7T0-01 1 11182179 11182179 G A MTOR Nonsense_Mutation p.Q2223* 0.35 TCGA-LL-A7T0-01 1 150418805 150418805 A T RPRD2 Silent p.S266S 0.32 TCGA-LL-A7T0-01 1 153746238 153746238 G T INTS3 3'UTR 0.40 TCGA-LL-A7T0-01 1 156552075 156552075 G A TTC24 Silent p.P253P 0.28 TCGA-LL-A7T0-01 1 176826748 176826748 C A ASTN1 3'Flank 0.19 TCGA-LL-A7T0-01 1 204191174 204191174 C T PLEKHA6 3'UTR 0.21 TCGA-LL-A7T0-01 1 34052716 34052716 G A CSMD2 Silent p.V2305V 0.13 TCGA-LL-A7T0-01 1 37947235 37947235 A T ZC3H12A Missense_Mutation p.K206M 0.35 deleterious(0) probably_damaging(0.999) TCGA-LL-A7T0-01 1 62594591 62594591 A T INADL Missense_Mutation p.N1749Y 0.48 deleterious(0) probably_damaging(0.987) TCGA-LL-A7T0-01 1 7723853 7723853 G A CAMTA1 Missense_Mutation p.A416T 0.22 tolerated_low_confidence(0.13) benign(0.001) TCGA-LL-A7T0-01 21 35474466 35474466 T C SLC5A3 3'UTR 0.22 TCGA-LL-A7T0-01 22 20342426 20342426 C T XXbac-B33L19.6 5'Flank 0.28 TCGA-LL-A7T0-01 22 26317233 26317233 C T MYO18B Missense_Mutation p.R1792W 0.58 deleterious(0) probably_damaging(1) TCGA-LL-A7T0-01 2 101031516 101031517 - GCA CHST10 5'UTR 0.49 TCGA-LL-A7T0-01 2 102855657 102855657 G A IL1RL2 Missense_Mutation p.E562K 0.75 tolerated_low_confidence(1) benign(0) TCGA-LL-A7T0-01 2 102855735 102855735 G A IL1RL2 3'UTR 0.73 TCGA-LL-A7T0-01 2 150426376 150426376 C T MMADHC 3'UTR 0.28 TCGA-LL-A7T0-01 2 179500851 179500851 C T TTN Missense_Mutation p.G13816D 0.13 TCGA-LL-A7T0-01 2 233723096 233723096 C A GIGYF2 3'UTR 0.33 TCGA-LL-A7T0-01 2 44049973 44049973 C T ABCG5 Missense_Mutation p.V476I 0.18 tolerated(1) benign(0.009) TCGA-LL-A7T0-01 3 118865928 118865928 G A C3orf30 Missense_Mutation p.V298I 0.33 tolerated(0.2) benign(0.228) TCGA-LL-A7T0-01 3 122335877 122335877 T C PARP15 Missense_Mutation p.V289A 0.12 tolerated(0.1) benign(0.152) TCGA-LL-A7T0-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.64 deleterious(0.02) probably_damaging(0.959) TCGA-LL-A7T0-01 3 65361596 65361596 T C MAGI1 Missense_Mutation p.H1007R 0.33 deleterious(0) probably_damaging(1) TCGA-LL-A7T0-01 4 110765302 110765302 T G RRH Missense_Mutation p.S321R 0.57 tolerated_low_confidence(0.07) benign(0.101) TCGA-LL-A7T0-01 4 140641169 140641169 C - MAML3 Frame_Shift_Del p.V909Lfs*4 0.30 TCGA-LL-A7T0-01 4 77956977 77956977 C G SEPT11 3'UTR 0.13 TCGA-LL-A7T0-01 4 81208235 81208236 - T FGF5 3'UTR 0.08 TCGA-LL-A7T0-01 4 85742390 85742390 T C WDFY3 Missense_Mutation p.I480V 0.28 tolerated(0.16) benign(0.109) TCGA-LL-A7T0-01 4 89329723 89329723 G A HERC6 Missense_Mutation p.R441K 0.06 tolerated(0.09) benign(0.085) TCGA-LL-A7T0-01 5 140536294 140536294 G A PCDHB17 Missense_Mutation p.V240I 0.26 deleterious_low_confidence(0.01) benign(0.011) TCGA-LL-A7T0-01 6 26368437 26368437 C T BTN3A2 Silent p.F9F 0.44 TCGA-LL-A7T0-01 6 30919429 30919429 C T DPCR1 Missense_Mutation p.T1063I 0.26 tolerated(0.07) probably_damaging(0.941) TCGA-LL-A7T0-01 6 41884545 41884545 G A MED20 Silent p.A49A 0.17 TCGA-LL-A7T0-01 6 44218127 44218127 A G HSP90AB1 Missense_Mutation p.I250V 0.34 tolerated(0.42) benign(0.001) TCGA-LL-A7T0-01 6 94120042 94120042 G A EPHA7 Intron 0.61 TCGA-LL-A7T0-01 7 23683241 23683241 A G CCDC126 3'UTR 0.24 TCGA-LL-A7T0-01 8 125113419 125113419 G A FER1L6 Nonsense_Mutation p.W1655* 0.15 TCGA-LL-A7T0-01 8 143694489 143694489 C T ARC Missense_Mutation p.A382T 0.14 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-LL-A7T0-01 8 16978239 16978239 A G MICU3 3'UTR 0.38 TCGA-LL-A7T0-01 8 75227342 75227342 C T JPH1 Missense_Mutation p.R298H 0.17 deleterious(0) probably_damaging(0.999) TCGA-LL-A7T0-01 9 125438220 125438220 G A OR1L3 Missense_Mutation p.R271Q 0.50 tolerated(0.22) benign(0.074) TCGA-LL-A7T0-01 9 134145803 134145803 C T FAM78A Intron 0.44 TCGA-LL-A7T0-01 9 138387278 138387278 C T C9orf116 Missense_Mutation p.D136N 0.39 tolerated_low_confidence(0.09) possibly_damaging(0.656) TCGA-LL-A7T0-01 9 138413379 138413379 C T LCN1 Silent p.L12L 0.39 TCGA-LL-A7T0-01 9 140174654 140174654 G A TOR4A 3'UTR 0.35 TCGA-LL-A7T0-01 9 91993945 91993945 A T SEMA4D Missense_Mutation p.C755S 0.31 deleterious(0) probably_damaging(0.999) TCGA-LL-A7T0-01 X 142718198 142718198 C A SLITRK4 Nonsense_Mutation p.E243* 0.16 TCGA-LL-A7T0-01 X 23353163 23353163 G A PTCHD1 Silent p.A57A 0.10 TCGA-LL-A7T0-01 X 70460880 70460880 C A ZMYM3 Missense_Mutation p.W1333C 0.14 deleterious(0) probably_damaging(0.999) TCGA-LL-A7T0-01 X 72433291 72433291 G A NAP1L2 Silent p.I346I 0.59 TCGA-LL-A8F5-01 10 104231155 104231155 T C TMEM180 Splice_Site p.X276_splice 0.09 TCGA-LL-A8F5-01 10 105215400 105215400 C A CALHM1 Missense_Mutation p.W220C 0.33 deleterious(0) probably_damaging(0.999) TCGA-LL-A8F5-01 10 16877133 16877133 G C CUBN Missense_Mutation p.N3414K 0.24 tolerated(0.91) benign(0.309) TCGA-LL-A8F5-01 10 17142044 17142044 A T CUBN Missense_Mutation p.N575K 0.15 tolerated(0.23) benign(0.023) TCGA-LL-A8F5-01 10 1779245 1779245 C G ADARB2 Missense_Mutation p.D34H 0.10 deleterious_low_confidence(0.01) benign(0.011) TCGA-LL-A8F5-01 10 29762879 29762879 G C SVIL Missense_Mutation p.A1806G 0.32 tolerated(0.16) benign(0.423) TCGA-LL-A8F5-01 10 91178381 91178381 C T IFIT5 Silent p.L475L 0.10 TCGA-LL-A8F5-01 10 94397062 94397062 A G KIF11 Missense_Mutation p.D666G 0.25 tolerated(0.14) benign(0.008) TCGA-LL-A8F5-01 11 1157818 1157818 C G MUC5AC Silent p.L295L 0.11 TCGA-LL-A8F5-01 11 125770049 125770049 C G HYLS1 Missense_Mutation p.N262K 0.28 deleterious(0) probably_damaging(0.999) TCGA-LL-A8F5-01 11 129785656 129785656 C T PRDM10 Missense_Mutation p.G813R 0.59 deleterious(0.03) probably_damaging(1) TCGA-LL-A8F5-01 11 18429182 18429182 G T LDHA 3'UTR 0.12 TCGA-LL-A8F5-01 11 18740192 18740192 T G IGSF22 Missense_Mutation p.K260N 0.64 deleterious(0) probably_damaging(0.957) TCGA-LL-A8F5-01 11 25103739 25103739 T G LUZP2 3'Flank 0.17 TCGA-LL-A8F5-01 11 55339972 55339972 C T OR4C16 Silent p.D123D 0.32 TCGA-LL-A8F5-01 11 57067476 57067476 C A TNKS1BP1 3'UTR 0.40 TCGA-LL-A8F5-01 11 57067477 57067477 A T TNKS1BP1 3'UTR 0.37 TCGA-LL-A8F5-01 11 58126214 58126214 T A OR5B17 Missense_Mutation p.N110I 0.24 deleterious_low_confidence(0.02) benign(0.38) TCGA-LL-A8F5-01 11 60184451 60184451 T A MS4A14 Missense_Mutation p.N703K 0.08 tolerated_low_confidence(0.44) benign(0.002) TCGA-LL-A8F5-01 11 64129416 64129428 AGCGATTGGGCGC TCCTTACACTGGGGCACT RPS6KA4 Frame_Shift_Ins p.K283Ifs*94 0.15 TCGA-LL-A8F5-01 11 66334942 66334942 G T CTSF Silent p.S168S 0.10 TCGA-LL-A8F5-01 11 6642802 6642802 T C DCHS1 3'UTR 0.44 TCGA-LL-A8F5-01 11 72548295 72548295 C A FCHSD2 3'Flank 0.29 TCGA-LL-A8F5-01 11 73575512 73575512 G A MRPL48 3'UTR 0.25 TCGA-LL-A8F5-01 12 113448203 113448203 G A OAS2 Missense_Mutation p.G692R 0.15 deleterious(0.03) benign(0.011) TCGA-LL-A8F5-01 12 116397670 116397670 C G MED13L 3'UTR 0.58 TCGA-LL-A8F5-01 12 130649901 130649901 T C FZD10 3'UTR 0.52 TCGA-LL-A8F5-01 12 132529447 132529447 C - EP400 Frame_Shift_Del p.P2246Lfs*4 0.30 TCGA-LL-A8F5-01 12 46298746 46298746 C G ARID2 Nonsense_Mutation p.S1798* 0.30 TCGA-LL-A8F5-01 12 53042826 53042826 G C KRT2 Missense_Mutation p.Q308E 0.23 tolerated(0.17) benign(0.268) TCGA-LL-A8F5-01 12 53607330 53607349 ATCTCCAGGGGCAGGAGCTG - RARG Frame_Shift_Del p.Q317Gfs*2 0.18 TCGA-LL-A8F5-01 12 55421992 55421992 C A NEUROD4 3'UTR 0.39 TCGA-LL-A8F5-01 12 56351740 56351740 G C PMEL Missense_Mutation p.L200V 0.28 deleterious(0.01) possibly_damaging(0.668) TCGA-LL-A8F5-01 12 73014937 73014937 C A TRHDE Missense_Mutation p.P795Q 0.15 tolerated(0.37) probably_damaging(0.977) TCGA-LL-A8F5-01 13 103249352 103249352 G T TPP2 5'Flank 0.08 TCGA-LL-A8F5-01 13 103418548 103418548 T A TEX30 3'UTR 0.69 TCGA-LL-A8F5-01 13 52952606 52952606 C T THSD1 Missense_Mutation p.R500Q 0.39 tolerated(0.28) benign(0.02) TCGA-LL-A8F5-01 14 101350322 101350322 T G RTL1 Silent p.P268P 0.10 TCGA-LL-A8F5-01 14 23991781 23991781 T A ZFHX2 Missense_Mutation p.Y2370F 0.45 unknown(0) TCGA-LL-A8F5-01 14 24528172 24528172 C T LRRC16B Silent p.G516G 0.16 TCGA-LL-A8F5-01 14 50886712 50886712 G A MAP4K5 3'UTR 0.43 TCGA-LL-A8F5-01 14 76948455 76948455 C A ESRRB Missense_Mutation p.P204H 0.21 deleterious(0.05) probably_damaging(0.923) TCGA-LL-A8F5-01 14 88945883 88945883 T C PTPN21 Missense_Mutation p.Q631R 0.13 tolerated_low_confidence(0.64) benign(0.001) TCGA-LL-A8F5-01 14 96157071 96157071 A G TCL1B Splice_Site p.X55_splice 0.26 TCGA-LL-A8F5-01 14 96706596 96706596 C T BDKRB2 Intron 0.64 TCGA-LL-A8F5-01 14 96707797 96707797 C T BDKRB2 Missense_Mutation p.R378C 0.57 deleterious(0.04) possibly_damaging(0.871) TCGA-LL-A8F5-01 15 23931678 23931678 C T NDN Silent p.G229G 0.54 TCGA-LL-A8F5-01 15 27185162 27185162 T G GABRA5 Missense_Mutation p.V272G 0.09 deleterious(0) probably_damaging(0.966) TCGA-LL-A8F5-01 16 2164230 2164230 T C PKD1 Missense_Mutation p.I932V 0.23 benign(0.063) TCGA-LL-A8F5-01 16 29884719 29884734 GGAACCCCCGGGTTCA - SEZ6L2 Frame_Shift_Del p.L772Pfs*54 0.18 TCGA-LL-A8F5-01 16 31388375 31388375 C T ITGAX Silent p.L894L 0.25 TCGA-LL-A8F5-01 16 67688523 67688523 A G RLTPR Silent p.R1170R 0.26 TCGA-LL-A8F5-01 16 67778312 67778312 C T RANBP10 Silent p.S149S 0.28 TCGA-LL-A8F5-01 16 70695389 70695389 C G MTSS1L 3'UTR 0.58 TCGA-LL-A8F5-01 16 76513374 76513374 C T CNTNAP4 Silent p.Y534Y 0.23 TCGA-LL-A8F5-01 16 904580 904580 C T LMF1 Silent p.L552L 0.26 TCGA-LL-A8F5-01 17 10411817 10411817 C A MYH1 Missense_Mutation p.G587V 0.53 deleterious(0) probably_damaging(0.989) TCGA-LL-A8F5-01 17 28795236 28795236 A C CPD 3'UTR 0.14 TCGA-LL-A8F5-01 17 36878141 36878141 C G MLLT6 Nonsense_Mutation p.S818* 0.19 TCGA-LL-A8F5-01 17 39684331 39684331 A T KRT19 Missense_Mutation p.S57T 0.58 tolerated(0.4) benign(0.037) TCGA-LL-A8F5-01 17 40937136 40937136 C G WNK4 Missense_Mutation p.H398D 0.11 tolerated(0.42) unknown(0) TCGA-LL-A8F5-01 17 41234556 41234556 G A BRCA1 Nonsense_Mutation p.Q1408* 0.79 TCGA-LL-A8F5-01 17 42931995 42931995 G A EFTUD2 Missense_Mutation p.R730C 0.64 deleterious(0) probably_damaging(0.999) TCGA-LL-A8F5-01 17 48166609 48166609 A G ITGA3 Missense_Mutation p.T1061A 0.18 tolerated_low_confidence(0.56) benign(0.018) TCGA-LL-A8F5-01 17 48551946 48551946 T G ACSF2 3'UTR 0.42 TCGA-LL-A8F5-01 17 51901887 51901887 A T KIF2B Missense_Mutation p.K498I 0.19 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 17 60749086 60749086 C G MRC2 Silent p.A398A 0.46 TCGA-LL-A8F5-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.47 deleterious(0) probably_damaging(0.993) TCGA-LL-A8F5-01 18 19427075 19427075 G T MIB1 Missense_Mutation p.K794N 0.38 tolerated(0.6) benign(0.201) TCGA-LL-A8F5-01 18 32864577 32864577 A T ZSCAN30 Intron 0.47 TCGA-LL-A8F5-01 18 72997521 72997521 C G TSHZ1 Missense_Mutation p.I8M 0.11 tolerated(0.11) benign(0.197) TCGA-LL-A8F5-01 19 12962981 12962981 C G MAST1 Missense_Mutation p.A310G 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-LL-A8F5-01 19 13084219 13084219 G T DAND5 Missense_Mutation p.G114V 0.24 deleterious(0) probably_damaging(0.995) TCGA-LL-A8F5-01 19 13428040 13428040 G C CACNA1A Missense_Mutation p.R481G 0.08 possibly_damaging(0.858) TCGA-LL-A8F5-01 19 1533984 1533984 C G PLK5 Missense_Mutation p.R257G 0.24 tolerated(0.22) benign(0.007) TCGA-LL-A8F5-01 19 17992971 17992971 A G SLC5A5 Silent p.G395G 0.07 TCGA-LL-A8F5-01 19 19767885 19767885 G A ATP13A1 Missense_Mutation p.A275V 0.43 tolerated(0.87) benign(0.153) TCGA-LL-A8F5-01 19 42092901 42092901 C T CEACAM21 3'UTR 0.33 TCGA-LL-A8F5-01 19 45976131 45976131 T G FOSB Missense_Mutation p.F293C 0.10 tolerated(0.21) probably_damaging(0.941) TCGA-LL-A8F5-01 19 51506431 51506431 C T KLK9 Missense_Mutation p.R230H 0.06 deleterious(0.02) benign(0.034) TCGA-LL-A8F5-01 19 51537248 51537248 T G KLK12 Missense_Mutation p.H62P 0.26 deleterious(0) probably_damaging(0.977) TCGA-LL-A8F5-01 19 51919403 51919403 T C SIGLEC10 Missense_Mutation p.Q258R 0.08 tolerated(0.19) benign(0.179) TCGA-LL-A8F5-01 19 54759416 54759416 G C LILRB5 Missense_Mutation p.P229A 0.11 tolerated(0.06) benign(0.311) TCGA-LL-A8F5-01 19 55753817 55753817 G A PPP6R1 Missense_Mutation p.R220C 0.12 deleterious(0.01) benign(0.365) TCGA-LL-A8F5-01 19 57910434 57910434 A T ZNF548 Missense_Mutation p.K272I 0.40 deleterious(0) probably_damaging(0.995) TCGA-LL-A8F5-01 19 58102698 58102698 A G ZIK1 3'UTR 0.19 TCGA-LL-A8F5-01 1 109944524 109944524 A C PSMA5 3'UTR 0.20 TCGA-LL-A8F5-01 1 158613112 158613112 C A SPTA1 Missense_Mutation p.R1481M 0.13 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 1 159805068 159805068 T C SLAMF8 3'UTR 0.36 TCGA-LL-A8F5-01 1 179354383 179354383 T A AXDND1 Missense_Mutation p.L251Q 0.24 deleterious(0) probably_damaging(0.973) TCGA-LL-A8F5-01 1 203712420 203712420 T C ATP2B4 3'UTR 0.18 TCGA-LL-A8F5-01 1 21940140 21940140 T A RAP1GAP Missense_Mutation p.N216I 0.51 deleterious(0) probably_damaging(0.961) TCGA-LL-A8F5-01 1 225428338 225428338 A G DNAH14 Missense_Mutation p.T1761A 0.21 tolerated(0.59) benign(0) TCGA-LL-A8F5-01 1 228400433 228400433 G A OBSCN Missense_Mutation p.V317M 0.17 probably_damaging(0.938) TCGA-LL-A8F5-01 1 31426766 31426766 G A PUM1 Missense_Mutation p.R796C 0.58 deleterious(0) probably_damaging(0.991) TCGA-LL-A8F5-01 1 36642151 36642151 C T MAP7D1 Missense_Mutation p.A401V 0.44 benign(0.023) TCGA-LL-A8F5-01 1 55282786 55282796 TGCTCATGCAG - C1orf177 Splice_Site p.X393_splice 0.45 TCGA-LL-A8F5-01 20 2320628 2320628 G T TGM3 Missense_Mutation p.K643N 0.60 tolerated(0.07) possibly_damaging(0.6) TCGA-LL-A8F5-01 20 30408107 30408107 A T MYLK2 Missense_Mutation p.K77N 0.32 tolerated_low_confidence(0.23) benign(0.013) TCGA-LL-A8F5-01 20 33030051 33030051 A G ITCH Missense_Mutation p.Y344C 0.08 deleterious(0) probably_damaging(0.995) TCGA-LL-A8F5-01 20 44757653 44757653 C T CD40 Missense_Mutation p.R270C 0.42 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 20 61438794 61438795 TG - OGFR Intron 0.31 TCGA-LL-A8F5-01 20 61576288 61576288 C A GID8 3'UTR 0.33 TCGA-LL-A8F5-01 20 62730304 62730304 T A OPRL1 3'UTR 0.38 TCGA-LL-A8F5-01 20 62871903 62871903 G C MYT1 3'UTR 0.29 TCGA-LL-A8F5-01 21 15744283 15744283 C G HSPA13 3'UTR 0.07 TCGA-LL-A8F5-01 21 37572712 37572712 C A DOPEY2 Missense_Mutation p.P135Q 0.12 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 21 39673394 39673394 A T KCNJ15 3'UTR 0.16 TCGA-LL-A8F5-01 21 41384705 41384705 A G DSCAM 3'UTR 0.57 TCGA-LL-A8F5-01 22 20458788 20458788 C T RIMBP3 Missense_Mutation p.M838I 0.30 tolerated(0.08) benign(0) TCGA-LL-A8F5-01 22 24179069 24179069 G C DERL3 Intron 0.22 TCGA-LL-A8F5-01 22 26348350 26348350 C A MYO18B Missense_Mutation p.N1977K 0.16 deleterious(0) possibly_damaging(0.783) TCGA-LL-A8F5-01 22 43010832 43010832 C G POLDIP3 Missense_Mutation p.R11T 0.57 deleterious(0) probably_damaging(0.998) TCGA-LL-A8F5-01 22 51117237 51117237 G A SHANK3 Silent p.T163T 0.76 TCGA-LL-A8F5-01 2 107460189 107460190 - G ST6GAL2 Frame_Shift_Ins p.R82Pfs*26 0.19 TCGA-LL-A8F5-01 2 131674073 131674073 G A ARHGEF4 5'Flank 0.74 TCGA-LL-A8F5-01 2 179442139 179442139 G T TTN Missense_Mutation p.P22975T 0.43 TCGA-LL-A8F5-01 2 179612119 179612119 G A TTN Intron 0.48 TCGA-LL-A8F5-01 2 179633661 179633661 C A TTN Splice_Site p.X2968_splice 0.59 TCGA-LL-A8F5-01 2 216960853 216960853 G A TMEM169 Missense_Mutation p.R56H 0.62 deleterious(0.01) probably_damaging(0.96) TCGA-LL-A8F5-01 2 219869021 219869021 G C CCDC108 Missense_Mutation p.S1736R 0.21 tolerated(0.2) possibly_damaging(0.668) TCGA-LL-A8F5-01 2 233348865 233348865 C T ECEL1 Missense_Mutation p.R418H 0.62 deleterious(0) probably_damaging(0.999) TCGA-LL-A8F5-01 2 238443231 238443231 T A MLPH Missense_Mutation p.S349T 0.55 tolerated(0.11) possibly_damaging(0.584) TCGA-LL-A8F5-01 2 242793361 242793361 A C PDCD1 Missense_Mutation p.V239G 0.57 tolerated(0.15) benign(0) TCGA-LL-A8F5-01 2 27323341 27323341 G A CGREF1 3'Flank 0.24 TCGA-LL-A8F5-01 2 33952455 33952455 C T AC009499.1 Intron 0.53 TCGA-LL-A8F5-01 2 44502870 44502870 G A SLC3A1 Missense_Mutation p.A66T 0.12 deleterious(0) probably_damaging(0.996) TCGA-LL-A8F5-01 2 47249087 47249087 G - TTC7A Frame_Shift_Del p.G494Vfs*13 0.18 TCGA-LL-A8F5-01 2 62934360 62934360 G C EHBP1 Missense_Mutation p.G12R 0.31 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 2 6989934 6989934 T C CMPK2 3'UTR 0.44 TCGA-LL-A8F5-01 2 89309494 89309494 C T IGKV1-9 Silent p.Q112Q 0.38 TCGA-LL-A8F5-01 3 128181375 128181375 C T DNAJB8 3'UTR 0.34 TCGA-LL-A8F5-01 3 129325042 129325042 G T PLXND1 Missense_Mutation p.F147L 0.23 tolerated(0.38) benign(0.02) TCGA-LL-A8F5-01 3 130403136 130403136 G A PIK3R4 Missense_Mutation p.R1189C 0.28 deleterious(0) probably_damaging(0.977) TCGA-LL-A8F5-01 3 139094414 139094414 C T COPB2 Missense_Mutation p.G183R 0.71 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 3 151085954 151085954 C T MED12L Silent p.D1120D 0.57 TCGA-LL-A8F5-01 3 195513574 195513574 G T MUC4 Missense_Mutation p.S1626Y 0.40 possibly_damaging(0.892) TCGA-LL-A8F5-01 3 48605036 48605036 G A COL7A1 Missense_Mutation p.P2673S 0.41 probably_damaging(0.954) TCGA-LL-A8F5-01 3 52237938 52237938 C G ALAS1 Missense_Mutation p.P163A 0.17 tolerated(0.86) benign(0.01) TCGA-LL-A8F5-01 3 57357071 57357071 G A DNAH12 Silent p.S214S 0.49 TCGA-LL-A8F5-01 3 58855120 58855120 G C C3orf67 Missense_Mutation p.P192A 0.55 tolerated(0.41) benign(0.001) TCGA-LL-A8F5-01 3 89528845 89528845 G T EPHA3 3'UTR 0.15 TCGA-LL-A8F5-01 4 110667597 110667597 G C CFI Missense_Mutation p.L404V 0.15 tolerated(0.41) benign(0) TCGA-LL-A8F5-01 4 126328183 126328183 G T FAT4 Missense_Mutation p.G1819V 0.11 probably_damaging(1) TCGA-LL-A8F5-01 4 148944413 148944413 G A ARHGAP10 Splice_Site p.X573_splice 0.32 TCGA-LL-A8F5-01 4 159174618 159174629 TGATACTTGCAT - TMEM144 In_Frame_Del p.M326_F330delinsI 0.54 TCGA-LL-A8F5-01 4 183710535 183710535 T C TENM3 Missense_Mutation p.L1865S 0.33 tolerated(0.06) possibly_damaging(0.86) TCGA-LL-A8F5-01 4 183960156 183960156 C G FAM92A1P2 RNA 0.63 TCGA-LL-A8F5-01 4 40337890 40337890 C A CHRNA9 Missense_Mutation p.D37E 0.45 tolerated(0.4) benign(0.433) TCGA-LL-A8F5-01 4 73984448 73984448 G A ANKRD17 Missense_Mutation p.A1382V 0.38 benign(0.355) TCGA-LL-A8F5-01 4 86863251 86863251 C T ARHGAP24 Missense_Mutation p.R142C 0.21 deleterious(0.03) possibly_damaging(0.676) TCGA-LL-A8F5-01 4 86916623 86916623 G T ARHGAP24 Missense_Mutation p.D606Y 0.12 deleterious(0) possibly_damaging(0.885) TCGA-LL-A8F5-01 4 88053472 88053472 G C AFF1 Missense_Mutation p.D1075H 0.09 deleterious(0) unknown(0) TCGA-LL-A8F5-01 5 131722751 131722751 C G SLC22A5 Missense_Mutation p.Q287E 0.54 deleterious(0.01) benign(0.405) TCGA-LL-A8F5-01 5 140725240 140725240 C T PCDHGA3 Missense_Mutation p.S547L 0.38 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-LL-A8F5-01 5 140746096 140746096 G C PCDHGA5 Silent p.A733A 0.81 TCGA-LL-A8F5-01 5 148876376 148876376 C A CSNK1A1 3'Flank 0.39 TCGA-LL-A8F5-01 5 176292672 176292672 C T UNC5A Intron 0.70 TCGA-LL-A8F5-01 5 43277163 43277163 G - NIM1K Frame_Shift_Del p.V100Wfs*11 0.28 TCGA-LL-A8F5-01 5 7802412 7802412 G A ADCY2 Missense_Mutation p.D904N 0.15 tolerated(0.18) possibly_damaging(0.553) TCGA-LL-A8F5-01 5 9063093 9063093 C T SEMA5A Silent p.K808K 0.15 TCGA-LL-A8F5-01 6 107956487 107956487 C G SOBP Missense_Mutation p.D813E 0.09 tolerated(0.22) probably_damaging(0.99) TCGA-LL-A8F5-01 6 161469825 161469825 T A MAP3K4 Nonsense_Mutation p.L174* 0.46 TCGA-LL-A8F5-01 6 31085066 31085066 C T CDSN Missense_Mutation p.G109E 0.09 deleterious_low_confidence(0) unknown(0) TCGA-LL-A8F5-01 6 36467648 36467648 A C STK38 Splice_Site p.X318_splice 0.13 TCGA-LL-A8F5-01 6 37336259 37336259 G C RNF8 Splice_Site p.X81_splice 0.36 TCGA-LL-A8F5-01 6 41185549 41185549 T A TREML3P RNA 0.40 TCGA-LL-A8F5-01 6 42974953 42974953 G A PPP2R5D Missense_Mutation p.R181Q 0.17 deleterious(0.02) possibly_damaging(0.904) TCGA-LL-A8F5-01 6 51921496 51921496 C T PKHD1 Missense_Mutation p.G565S 0.42 deleterious(0.01) probably_damaging(0.983) TCGA-LL-A8F5-01 7 105739623 105739623 T C SYPL1 Missense_Mutation p.T77A 0.06 tolerated(1) benign(0.003) TCGA-LL-A8F5-01 7 105752674 105752674 G A SYPL1 Intron 0.05 TCGA-LL-A8F5-01 7 111970156 111970156 G C ZNF277 Missense_Mutation p.C229S 0.05 deleterious(0) probably_damaging(1) TCGA-LL-A8F5-01 7 131195948 131195948 G A PODXL Silent p.N115N 0.06 TCGA-LL-A8F5-01 7 140268560 140268560 C A DENND2A Intron 0.09 TCGA-LL-A8F5-01 7 149171048 149171048 C T ZNF746 3'UTR 0.33 TCGA-LL-A8F5-01 7 23509667 23509667 G A IGF2BP3 Silent p.I21I 0.05 TCGA-LL-A8F5-01 7 26236611 26236611 T C HNRNPA2B1 Silent p.V109V 0.21 TCGA-LL-A8F5-01 7 56119470 56119470 T A CCT6A 5'UTR 0.39 TCGA-LL-A8F5-01 7 87280149 87280149 A C RUNDC3B Missense_Mutation p.K45T 0.08 deleterious(0) possibly_damaging(0.901) TCGA-LL-A8F5-01 7 94294753 94294753 T G PEG10 3'UTR 0.09 TCGA-LL-A8F5-01 7 99129218 99129218 G C ZKSCAN5 Missense_Mutation p.Q622H 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-LL-A8F5-01 8 104330866 104330866 T C FZD6 Missense_Mutation p.F76L 0.15 deleterious(0) probably_damaging(0.999) TCGA-LL-A8F5-01 8 110657461 110657461 C A RP11-422N16.3 Nonsense_Mutation p.S71* 0.07 TCGA-LL-A8F5-01 8 139155345 139155345 G A FAM135B Missense_Mutation p.T1183I 0.16 deleterious(0) probably_damaging(0.998) TCGA-LL-A8F5-01 8 142367796 142367796 G T GPR20 Nonsense_Mutation p.Y76* 0.49 TCGA-LL-A8F5-01 8 146067074 146067074 G A ZNF7 Missense_Mutation p.M194I 0.54 tolerated(0.26) benign(0) TCGA-LL-A8F5-01 8 35631918 35631918 G C UNC5D Silent p.R860R 0.23 TCGA-LL-A8F5-01 8 42033408 42033408 G C PLAT 3'UTR 0.12 TCGA-LL-A8F5-01 8 69017506 69017506 T A PREX2 Intron 0.16 TCGA-LL-A8F5-01 8 69017507 69017507 C T PREX2 Intron 0.16 TCGA-LL-A8F5-01 8 74209419 74209419 C T RDH10 Intron 0.10 TCGA-LL-A8F5-01 9 111938974 111938974 T C EPB41L4B Silent p.A830A 0.22 TCGA-LL-A8F5-01 9 130529357 130529357 C A SH2D3C Intron 0.21 TCGA-LL-A8F5-01 9 131122720 131122720 C G SLC27A4 Missense_Mutation p.L628V 0.16 tolerated(0.13) benign(0.125) TCGA-LL-A8F5-01 9 134350293 134350316 GCAGCCAGCACCCGGAGCAGACGG - PRRC2B In_Frame_Del p.S927_G934del 0.47 TCGA-LL-A8F5-01 9 136004676 136004676 G C RALGDS Silent p.A10A 0.11 TCGA-LL-A8F5-01 9 137726942 137726942 C T COL5A1 Silent p.D1754D 0.47 TCGA-LL-A8F5-01 9 36222793 36222793 A G GNE Silent p.V569V 0.34 TCGA-LL-A8F5-01 9 37785023 37785023 C T EXOSC3 Missense_Mutation p.V7I 0.22 tolerated_low_confidence(0.13) benign(0.001) TCGA-LL-A8F5-01 9 71398576 71398576 T C FAM122A 3'UTR 0.10 TCGA-LL-A8F5-01 9 74675482 74675482 T G C9orf57 5'UTR 0.43 TCGA-LL-A8F5-01 9 79121007 79121016 AAGAAATTTA - GCNT1 3'UTR 0.41 TCGA-LL-A8F5-01 9 79936172 79936172 T A VPS13A Missense_Mutation p.F1835I 0.48 tolerated(1) benign(0.009) TCGA-LL-A8F5-01 9 96305620 96305620 T C FAM120A Missense_Mutation p.W676R 0.08 deleterious(0) probably_damaging(0.998) TCGA-LL-A8F5-01 X 100118179 100118179 C A NOX1 Missense_Mutation p.K102N 0.08 deleterious(0) probably_damaging(0.994) TCGA-LL-A8F5-01 X 135761803 135761803 C T ARHGEF6 Missense_Mutation p.G574E 0.54 deleterious(0.02) benign(0.269) TCGA-LL-A8F5-01 X 144337236 144337236 A - SPANXN1 Frame_Shift_Del p.K42Rfs*2 0.22 TCGA-LL-A8F5-01 X 153607794 153607794 T C EMD 5'UTR 0.73 TCGA-LL-A8F5-01 X 15590354 15590354 G C ACE2 Nonsense_Mutation p.S545* 0.14 TCGA-LL-A8F5-01 X 23886716 23886716 C G APOO Missense_Mutation p.A128P 0.20 deleterious(0.02) benign(0.077) TCGA-LL-A8F5-01 X 34149495 34149495 A G FAM47A Missense_Mutation p.F301L 0.14 tolerated(1) benign(0.294) TCGA-LL-A8F5-01 X 44942756 44942757 - G KDM6A Frame_Shift_Ins p.V1113Gfs*38 0.34 TCGA-LL-A8F5-01 X 63410388 63410388 C T AMER1 Missense_Mutation p.D927N 0.64 tolerated(0.09) benign(0.04) TCGA-LL-A8F5-01 X 70812442 70814655 X:70812442-70814655 - ACRC large deletion p.X47_splice 0.08 TCGA-LL-A8F5-01 X 73964125 73964125 A G KIAA2022 Silent p.H89H 0.48 TCGA-LL-A9Q3-01 10 89720745 89720745 A - PTEN Frame_Shift_Del p.I300Sfs*7 0.34 TCGA-LL-A9Q3-01 11 10820640 10820641 - A EIF4G2 Frame_Shift_Ins p.V853Cfs*5 0.12 TCGA-LL-A9Q3-01 11 118355012 118355012 A T KMT2A Missense_Mutation p.I1401F 0.23 possibly_damaging(0.488) TCGA-LL-A9Q3-01 12 121434372 121434372 C A HNF1A Missense_Mutation p.P379H 0.38 deleterious(0) probably_damaging(1) TCGA-LL-A9Q3-01 12 50869876 50869876 C T LARP4 3'UTR 0.06 TCGA-LL-A9Q3-01 12 94975667 94975667 G A TMCC3 Silent p.S242S 0.11 TCGA-LL-A9Q3-01 14 38061240 38061240 G A FOXA1 Missense_Mutation p.S250F 0.14 deleterious(0) probably_damaging(1) TCGA-LL-A9Q3-01 14 51192728 51192728 C T NIN Silent p.Q2045Q 0.23 TCGA-LL-A9Q3-01 15 44849699 44849699 C T EIF3J Missense_Mutation p.A141V 0.33 tolerated(0.08) benign(0.143) TCGA-LL-A9Q3-01 16 28925809 28925809 G A RABEP2 Silent p.S214S 0.19 TCGA-LL-A9Q3-01 16 68857382 68857382 C T CDH1 Nonsense_Mutation p.Q673* 0.61 TCGA-LL-A9Q3-01 16 70916788 70916788 G A HYDIN Silent p.T3330T 0.71 TCGA-LL-A9Q3-01 16 767214 767214 C T METRN Missense_Mutation p.R237C 0.07 deleterious(0) possibly_damaging(0.563) TCGA-LL-A9Q3-01 17 39767209 39767209 A G KRT16 Missense_Mutation p.V319A 0.25 deleterious(0.05) possibly_damaging(0.534) TCGA-LL-A9Q3-01 17 66978762 66978762 T C ABCA9 Missense_Mutation p.Y1554C 0.23 deleterious(0) probably_damaging(0.94) TCGA-LL-A9Q3-01 18 32954003 32954003 A T ZNF396 Missense_Mutation p.V85E 0.31 tolerated(0.11) possibly_damaging(0.904) TCGA-LL-A9Q3-01 19 18260484 18260485 - GGAGG MAST3 Frame_Shift_Ins p.E1296Rfs*8 0.44 TCGA-LL-A9Q3-01 19 35827179 35827179 C A CD22 Missense_Mutation p.T218N 0.29 deleterious(0.02) possibly_damaging(0.9) TCGA-LL-A9Q3-01 19 40382298 40382298 G A FCGBP Missense_Mutation p.R3530W 0.06 possibly_damaging(0.898) TCGA-LL-A9Q3-01 19 48744227 48744227 C A CARD8 Silent p.L17L 0.21 TCGA-LL-A9Q3-01 19 57175517 57175517 C T ZNF835 Silent p.T350T 0.30 TCGA-LL-A9Q3-01 1 104160692 104160692 A T AMY2A Missense_Mutation p.R95S 0.12 tolerated(0.59) benign(0.081) TCGA-LL-A9Q3-01 1 151112456 151112456 C A SEMA6C Missense_Mutation p.A77S 0.11 deleterious(0) possibly_damaging(0.581) TCGA-LL-A9Q3-01 1 161022259 161022259 C T ARHGAP30 Missense_Mutation p.R304H 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-LL-A9Q3-01 1 200828729 200828729 T A CAMSAP2 3'UTR 0.31 TCGA-LL-A9Q3-01 1 202850302 202850302 T C RABIF Missense_Mutation p.N59S 0.44 tolerated(1) benign(0) TCGA-LL-A9Q3-01 1 225394852 225394852 C T DNAH14 Silent p.V1696V 0.17 TCGA-LL-A9Q3-01 1 60341208 60341208 A G HOOK1 3'UTR 0.19 TCGA-LL-A9Q3-01 1 64644148 64644148 G A ROR1 Silent p.P808P 0.14 TCGA-LL-A9Q3-01 1 67861602 67861602 G A IL12RB2 Missense_Mutation p.D807N 0.54 tolerated(1) benign(0.157) TCGA-LL-A9Q3-01 20 2375900 2375900 G A TGM6 Missense_Mutation p.R81Q 0.45 tolerated(0.54) benign(0) TCGA-LL-A9Q3-01 2 16734011 16734011 G C FAM49A 3'UTR 0.33 TCGA-LL-A9Q3-01 2 179427779 179427779 G A TTN Missense_Mutation p.R27694C 0.41 TCGA-LL-A9Q3-01 2 201775812 201775812 T C ORC2 3'UTR 0.26 TCGA-LL-A9Q3-01 2 227945170 227945170 G T COL4A4 Missense_Mutation p.P598T 0.40 possibly_damaging(0.908) TCGA-LL-A9Q3-01 2 24056855 24056856 TA - ATAD2B Frame_Shift_Del p.I554Rfs*11 0.21 TCGA-LL-A9Q3-01 2 42994467 42994467 C A HAAO 3'UTR 0.56 TCGA-LL-A9Q3-01 3 122447295 122447295 C T PARP14 Missense_Mutation p.H1753Y 0.27 deleterious(0.02) benign(0.099) TCGA-LL-A9Q3-01 3 142567176 142567176 G A PCOLCE2 Missense_Mutation p.R111W 0.40 deleterious(0) probably_damaging(0.993) TCGA-LL-A9Q3-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.29 tolerated(0.05) possibly_damaging(0.704) TCGA-LL-A9Q3-01 3 194995891 194995892 - A ACAP2 3'UTR 0.26 TCGA-LL-A9Q3-01 3 30729963 30729963 G A TGFBR2 Missense_Mutation p.R520Q 0.15 deleterious(0) probably_damaging(0.969) TCGA-LL-A9Q3-01 3 52437163 52437163 G C BAP1 Nonsense_Mutation p.Y627* 0.47 TCGA-LL-A9Q3-01 4 156135622 156135622 C G NPY2R Silent p.A177A 0.56 TCGA-LL-A9Q3-01 4 52861898 52861898 T C LRRC66 Silent p.E430E 0.33 TCGA-LL-A9Q3-01 4 82125883 82125883 G A PRKG2 Missense_Mutation p.R107W 0.23 deleterious(0.03) benign(0.424) TCGA-LL-A9Q3-01 4 83905821 83905821 C T LIN54 Silent p.T59T 0.08 TCGA-LL-A9Q3-01 5 109904227 109904227 T A TMEM232 Missense_Mutation p.N459I 0.14 deleterious(0) possibly_damaging(0.847) TCGA-LL-A9Q3-01 5 112176536 112176536 C A APC Missense_Mutation p.Q1749K 0.07 probably_damaging(0.983) TCGA-LL-A9Q3-01 5 140782944 140782944 T A PCDHGA9 Missense_Mutation p.I142N 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-LL-A9Q3-01 5 74877099 74877099 G A POLK Missense_Mutation p.E254K 0.41 deleterious(0) benign(0.371) TCGA-LL-A9Q3-01 6 136597363 136597363 C T BCLAF1 Missense_Mutation p.E434K 0.07 tolerated(0.07) possibly_damaging(0.486) TCGA-LL-A9Q3-01 6 30647166 30647166 G A PPP1R18 Missense_Mutation p.L538F 0.32 deleterious(0) probably_damaging(1) TCGA-LL-A9Q3-01 6 44232823 44232823 G C NFKBIE Silent p.G226G 0.15 TCGA-LL-A9Q3-01 7 114330907 114330907 G A FOXP2 3'UTR 0.30 TCGA-LL-A9Q3-01 7 141360635 141360636 AC - KIAA1147 3'UTR 0.19 TCGA-LL-A9Q3-01 7 151478392 151478392 G A PRKAG2 Silent p.T104T 0.20 TCGA-LL-A9Q3-01 7 153754611 153754611 G A DPP6 Intron 0.16 TCGA-LL-A9Q3-01 7 23385602 23385602 T A IGF2BP3 Nonsense_Mutation p.K300* 0.46 TCGA-LL-A9Q3-01 7 76111925 76111925 C A DTX2 Silent p.A123A 0.12 TCGA-LL-A9Q3-01 8 116632273 116632273 T A TRPS1 Nonsense_Mutation p.K18* 0.27 TCGA-LL-A9Q3-01 8 128959769 128959769 T A TMEM75 3'UTR 0.33 TCGA-LL-A9Q3-01 8 41788200 41788200 A G KAT6A 3'UTR 0.14 TCGA-LL-A9Q3-01 8 53044521 53044521 C T ST18 Missense_Mutation p.R888Q 0.18 deleterious(0) probably_damaging(0.989) TCGA-LL-A9Q3-01 9 100894510 100894510 C T CORO2A Missense_Mutation p.G241D 0.12 deleterious(0) probably_damaging(1) TCGA-LL-A9Q3-01 9 108456949 108456949 C T TMEM38B Missense_Mutation p.S3F 0.32 tolerated_low_confidence(0.67) benign(0.002) TCGA-LL-A9Q3-01 9 124910489 124910489 G A NDUFA8 Nonsense_Mutation p.Q95* 0.25 TCGA-LL-A9Q3-01 9 124910490 124910490 C A NDUFA8 Missense_Mutation p.Q94H 0.25 tolerated(0.12) benign(0.005) TCGA-LL-A9Q3-01 9 99012042 99012042 G A HSD17B3 Silent p.S160S 0.35 TCGA-LL-A9Q3-01 X 133905134 133905134 A G FAM122B 3'UTR 0.05 TCGA-LL-A9Q3-01 X 49957590 49957590 T A AKAP4 Missense_Mutation p.S592C 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-LL-A9Q3-01 X 64949406 64949406 G A MSN Missense_Mutation p.R100H 0.48 tolerated(0.58) probably_damaging(0.938) TCGA-LL-A9Q3-01 X 70470433 70470433 T A ZMYM3 Nonsense_Mutation p.K308* 0.29 TCGA-LL-A9Q3-01 X 85212912 85212912 C T CHM Missense_Mutation p.M296I 0.23 deleterious(0.02) benign(0.008) TCGA-OK-A5Q2-01 11 35456308 35456308 A C PAMR1 Missense_Mutation p.L477V 0.13 tolerated(0.1) benign(0.022) TCGA-OK-A5Q2-01 11 69951837 69951837 C T ANO1 Intron 0.23 TCGA-OK-A5Q2-01 12 120125299 120125299 G A CIT 3'UTR 0.17 TCGA-OK-A5Q2-01 12 122217348 122217348 C T TMEM120B 3'UTR 0.15 TCGA-OK-A5Q2-01 12 48360468 48360468 G A TMEM106C Silent p.V185V 0.14 TCGA-OK-A5Q2-01 12 57396615 57396615 G T ZBTB39 Missense_Mutation p.T696N 0.33 deleterious(0) probably_damaging(0.991) TCGA-OK-A5Q2-01 14 38061461 38061461 G C FOXA1 Missense_Mutation p.I176M 0.17 deleterious(0) probably_damaging(1) TCGA-OK-A5Q2-01 15 91496400 91496400 G A UNC45A Missense_Mutation p.E813K 0.17 tolerated(1) benign(0.007) TCGA-OK-A5Q2-01 17 20107793 20107793 C T SPECC1 Missense_Mutation p.T144M 0.15 deleterious(0.02) possibly_damaging(0.87) TCGA-OK-A5Q2-01 17 21147437 21147437 G A C17orf103 Silent p.I68I 0.14 TCGA-OK-A5Q2-01 17 36829644 36829644 G C C17orf96 Missense_Mutation p.L369V 0.23 tolerated(0.06) possibly_damaging(0.567) TCGA-OK-A5Q2-01 17 55123115 55123115 G A RNF126P1 RNA 0.19 TCGA-OK-A5Q2-01 1 112298464 112298464 A C DDX20 5'UTR 0.21 TCGA-OK-A5Q2-01 1 158326377 158326377 C T CD1E Nonsense_Mutation p.Q332* 0.20 TCGA-OK-A5Q2-01 1 159409829 159409829 C T OR10J1 Missense_Mutation p.S94F 0.20 tolerated(0.64) benign(0.049) TCGA-OK-A5Q2-01 1 206566959 206566959 T A SRGAP2 Missense_Mutation p.L168M 0.04 deleterious(0) probably_damaging(0.979) TCGA-OK-A5Q2-01 1 240990425 240990425 T G RGS7 Missense_Mutation p.R219S 0.22 deleterious(0.01) benign(0.225) TCGA-OK-A5Q2-01 1 26362715 26362715 G A EXTL1 3'UTR 0.25 TCGA-OK-A5Q2-01 1 46212090 46212090 G T IPP 5'UTR 0.18 TCGA-OK-A5Q2-01 20 62904882 62904882 C T PCMTD2 Missense_Mutation p.R339C 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-OK-A5Q2-01 21 31066223 31066223 G A GRIK1 Missense_Mutation p.S93L 0.21 deleterious(0) benign(0.441) TCGA-OK-A5Q2-01 3 126224610 126224610 G A UROC1 Silent p.L249L 0.15 TCGA-OK-A5Q2-01 3 150346080 150346080 G T SELT 3'UTR 0.15 TCGA-OK-A5Q2-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.20 tolerated(0.11) possibly_damaging(0.529) TCGA-OK-A5Q2-01 4 187541477 187541477 G A FAT1 Missense_Mutation p.A2088V 0.17 probably_damaging(0.999) TCGA-OK-A5Q2-01 5 35654760 35654760 C T SPEF2 Nonsense_Mutation p.R304* 0.10 TCGA-OK-A5Q2-01 5 56168740 56168740 C T MAP3K1 Nonsense_Mutation p.R532* 0.26 TCGA-OK-A5Q2-01 5 71654103 71654103 T C PTCD2 Missense_Mutation p.L339P 0.15 deleterious(0) probably_damaging(1) TCGA-OK-A5Q2-01 6 108843577 108843577 G A LACE1 Silent p.T465T 0.15 TCGA-OK-A5Q2-01 6 149982885 149982885 G A LATS1 Missense_Mutation p.R1125C 0.20 tolerated_low_confidence(0.17) benign(0.329) TCGA-OK-A5Q2-01 6 32135279 32135279 G A EGFL8 Splice_Site p.X228_splice 0.21 TCGA-OK-A5Q2-01 6 39033993 39033993 C G GLP1R Silent p.L141L 0.33 TCGA-OK-A5Q2-01 6 4937916 4937916 C T CDYL Nonsense_Mutation p.R356* 0.13 TCGA-OK-A5Q2-01 6 90371925 90371925 A C MDN1 Missense_Mutation p.L4816V 0.22 benign(0.017) TCGA-OK-A5Q2-01 7 75573208 75573208 C T POR Intron 0.16 TCGA-OK-A5Q2-01 8 145579988 145579988 C T FBXL6 Silent p.P399P 0.24 TCGA-OK-A5Q2-01 8 67049371 67049371 C T TRIM55 Silent p.N183N 0.25 TCGA-OK-A5Q2-01 9 126554879 126554879 T A DENND1A Missense_Mutation p.D40V 0.13 deleterious(0) probably_damaging(0.957) TCGA-OK-A5Q2-01 X 123518234 123518234 G A TENM1 Silent p.L2183L 0.08 TCGA-OK-A5Q2-01 X 130192253 130192253 G A ARHGAP36 5'UTR 0.21 TCGA-OK-A5Q2-01 X 18238916 18238916 G A BEND2 5'UTR 0.18 TCGA-OK-A5Q2-01 X 57619454 57619455 - T ZXDB Frame_Shift_Ins p.Q326Afs*34 0.11 TCGA-OK-A5Q2-01 X 64725812 64725812 C T ZC3H12B 3'UTR 0.24 TCGA-OK-A5Q2-01 X 69615826 69615826 C T KIF4A Missense_Mutation p.R806C 0.15 tolerated(0.1) benign(0.001) TCGA-OL-A5D6-01 10 105357645 105357645 T C SH3PXD2A 3'UTR 0.29 TCGA-OL-A5D6-01 10 82394052 82394052 C T SH2D4B Intron 0.24 TCGA-OL-A5D6-01 11 17464420 17464420 T C ABCC8 Missense_Mutation p.N493D 0.25 tolerated(1) benign(0.002) TCGA-OL-A5D6-01 11 30557579 30557579 C T MPPED2 Missense_Mutation p.G91E 0.13 deleterious(0.02) benign(0.12) TCGA-OL-A5D6-01 11 5011063 5011063 A G MMP26 Silent p.G95G 0.21 TCGA-OL-A5D6-01 12 101188653 101188653 G T ANO4 5'UTR 0.31 TCGA-OL-A5D6-01 12 111082851 111082851 G A TCTN1 Missense_Mutation p.V471M 0.24 deleterious(0) probably_damaging(0.987) TCGA-OL-A5D6-01 12 112703012 112703012 T C HECTD4 Silent p.K718K 0.21 TCGA-OL-A5D6-01 12 25357129 25357129 C G LYRM5 Missense_Mutation p.I52M 0.08 deleterious(0) probably_damaging(0.988) TCGA-OL-A5D6-01 12 4702196 4702196 G T DYRK4 Silent p.L49L 0.30 TCGA-OL-A5D6-01 13 40325312 40325312 A G COG6 3'UTR 0.18 TCGA-OL-A5D6-01 14 21679501 21679501 G C HNRNPC Intron 0.24 TCGA-OL-A5D6-01 14 21681136 21681136 G T HNRNPC Missense_Mutation p.S182Y 0.23 deleterious(0.01) benign(0.373) TCGA-OL-A5D6-01 14 68038563 68038565 CCT - PLEKHH1 In_Frame_Del p.S512del 0.21 TCGA-OL-A5D6-01 14 69259696 69259696 T A ZFP36L1 5'UTR 0.24 TCGA-OL-A5D6-01 15 91461569 91461569 C T MAN2A2 Missense_Mutation p.S1047L 0.14 deleterious(0.04) benign(0.003) TCGA-OL-A5D6-01 16 23647265 23647265 C T PALB2 Missense_Mutation p.S201N 0.28 tolerated(0.34) benign(0.034) TCGA-OL-A5D6-01 16 58074508 58074508 C A MMP15 Missense_Mutation p.N272K 0.41 deleterious(0) possibly_damaging(0.856) TCGA-OL-A5D6-01 16 71663387 71663387 C T MARVELD3 Silent p.C195C 0.25 TCGA-OL-A5D6-01 16 77232125 77232125 C T MON1B Missense_Mutation p.R522C 0.41 deleterious(0.02) benign(0.223) TCGA-OL-A5D6-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.57 deleterious(0.05) benign(0.006) TCGA-OL-A5D6-01 17 7577557 7577557 A C TP53 Missense_Mutation p.C242G 0.30 deleterious(0) probably_damaging(1) TCGA-OL-A5D6-01 17 7736205 7736205 G A DNAH2 Missense_Mutation p.V4313I 0.20 probably_damaging(0.988) TCGA-OL-A5D6-01 18 627251 627251 C T CLUL1 Missense_Mutation p.S193F 0.43 tolerated(0.52) benign(0.016) TCGA-OL-A5D6-01 19 39018355 39018355 C T RYR1 Silent p.D3585D 0.22 TCGA-OL-A5D6-01 1 154524283 154524283 G A UBE2Q1 Silent p.G346G 0.24 TCGA-OL-A5D6-01 1 193150064 193150064 C G B3GALT2 Missense_Mutation p.R210T 0.16 tolerated(0.1) benign(0.077) TCGA-OL-A5D6-01 1 193150335 193150335 C T B3GALT2 Missense_Mutation p.G120R 0.05 tolerated(0.51) benign(0.016) TCGA-OL-A5D6-01 1 206231084 206231084 C T AVPR1B Missense_Mutation p.S406L 0.11 deleterious(0) benign(0.053) TCGA-OL-A5D6-01 1 2160849 2160849 A T SKI Missense_Mutation p.E215V 0.19 deleterious(0.02) possibly_damaging(0.613) TCGA-OL-A5D6-01 1 221913041 221913041 T G DUSP10 Silent p.R16R 0.17 TCGA-OL-A5D6-01 1 248039236 248039236 G A TRIM58 Silent p.P302P 0.26 TCGA-OL-A5D6-01 1 44169764 44169764 A G KDM4A Missense_Mutation p.K1012R 0.13 deleterious(0.03) possibly_damaging(0.899) TCGA-OL-A5D6-01 1 9323595 9323595 G T H6PD Missense_Mutation p.R348L 0.28 deleterious(0) possibly_damaging(0.549) TCGA-OL-A5D6-01 20 31021321 31021321 A G ASXL1 Silent p.K440K 0.15 TCGA-OL-A5D6-01 20 853640 853640 C T ANGPT4 Missense_Mutation p.R492H 0.24 tolerated(0.05) possibly_damaging(0.666) TCGA-OL-A5D6-01 22 19163984 19163984 C T SLC25A1 Silent p.R257R 0.31 TCGA-OL-A5D6-01 22 50321021 50321022 CC T CRELD2 3'UTR 0.19 TCGA-OL-A5D6-01 2 113344148 113344148 T C CHCHD5 Intron 0.24 TCGA-OL-A5D6-01 2 114195307 114195307 G C CBWD2 5'UTR 0.21 TCGA-OL-A5D6-01 2 116535382 116535382 T A DPP10 Missense_Mutation p.S449T 0.36 tolerated(0.06) benign(0.002) TCGA-OL-A5D6-01 2 136622668 136622669 CA - MCM6 Frame_Shift_Del p.V331Efs*8 0.17 TCGA-OL-A5D6-01 2 149883155 149883155 C T KIF5C 3'UTR 0.21 TCGA-OL-A5D6-01 2 152421652 152421652 T C NEB Missense_Mutation p.K6126R 0.20 probably_damaging(0.999) TCGA-OL-A5D6-01 2 179640347 179640347 C T TTN Missense_Mutation p.E2082K 0.21 TCGA-OL-A5D6-01 2 242664469 242664469 G A ING5 3'UTR 0.27 TCGA-OL-A5D6-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.23 deleterious(0.01) probably_damaging(1) TCGA-OL-A5D6-01 3 33194615 33194615 G A SUSD5 Silent p.V503V 0.04 TCGA-OL-A5D6-01 3 39228770 39228770 C T XIRP1 Missense_Mutation p.G723S 0.10 deleterious(0.02) probably_damaging(0.979) TCGA-OL-A5D6-01 3 52557772 52557772 C T STAB1 Silent p.P2465P 0.07 TCGA-OL-A5D6-01 4 56299112 56299112 T C CLOCK 3'UTR 0.19 TCGA-OL-A5D6-01 4 76582746 76582746 G A G3BP2 Missense_Mutation p.P116S 0.27 deleterious(0.01) possibly_damaging(0.835) TCGA-OL-A5D6-01 5 139938256 139938256 C T APBB3 Missense_Mutation p.G466S 0.22 tolerated(0.91) possibly_damaging(0.761) TCGA-OL-A5D6-01 5 140229249 140229249 C T PCDHA9 Missense_Mutation p.T390M 0.34 tolerated_low_confidence(0.09) benign(0.104) TCGA-OL-A5D6-01 5 92929603 92929603 G A NR2F1 3'UTR 0.29 TCGA-OL-A5D6-01 6 123539855 123539855 A G TRDN Missense_Mutation p.L694S 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-OL-A5D6-01 7 129349004 129349004 C T NRF1 Silent p.I232I 0.06 TCGA-OL-A5D6-01 7 51085200 51085200 G A COBL 3'UTR 0.28 TCGA-OL-A5D6-01 8 10467608 10467609 - TTTAGTTTCCTCTAACTGCACCCCCTCTTCTTGCAGCCCTTCTTCTGT RP1L1 In_Frame_Ins p.E1333_E1334insTEEGLQEEGVQLEETK 0.08 TCGA-OL-A5D6-01 9 73001790 73001790 C T KLF9 3'UTR 0.36 TCGA-OL-A5D6-01 X 73957738 73957738 A T KIAA2022 3'UTR 0.55 TCGA-OL-A5D7-01 10 87487739 87487739 T C GRID1 Missense_Mutation p.D469G 0.17 deleterious(0.01) possibly_damaging(0.782) TCGA-OL-A5D7-01 10 90492304 90492304 T C LIPK Missense_Mutation p.V222A 0.27 deleterious(0.01) benign(0.014) TCGA-OL-A5D7-01 10 96522607 96522607 G T CYP2C19 Missense_Mutation p.D49Y 0.29 deleterious(0.04) benign(0.134) TCGA-OL-A5D7-01 11 119533407 119533407 G A PVRL1 3'UTR 0.60 TCGA-OL-A5D7-01 11 123886844 123886844 G A OR10G4 Missense_Mutation p.C188Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-OL-A5D7-01 11 134018545 134018545 C T JAM3 Silent p.F272F 0.07 TCGA-OL-A5D7-01 11 16205462 16205462 G C SOX6 Missense_Mutation p.H249Q 0.38 deleterious(0.02) possibly_damaging(0.596) TCGA-OL-A5D7-01 11 20691252 20691252 C T NELL1 5'UTR 0.11 TCGA-OL-A5D7-01 11 2937968 2937968 C T SLC22A18 Missense_Mutation p.P218L 0.14 deleterious(0.04) benign(0.281) TCGA-OL-A5D7-01 11 55579306 55579306 C T OR5L1 Missense_Mutation p.R122C 0.29 deleterious(0.04) benign(0.032) TCGA-OL-A5D7-01 11 68115418 68115418 G A LRP5 Silent p.A65A 0.13 TCGA-OL-A5D7-01 11 71940244 71940244 C A INPPL1 Missense_Mutation p.T210N 0.09 deleterious(0.02) probably_damaging(0.925) TCGA-OL-A5D7-01 11 865764 865764 C T TSPAN4 Missense_Mutation p.S168F 0.51 deleterious(0.01) probably_damaging(0.983) TCGA-OL-A5D7-01 12 120595785 120595785 C T GCN1L1 Silent p.L985L 0.20 TCGA-OL-A5D7-01 12 56504773 56504773 C G PA2G4 Missense_Mutation p.R290G 0.34 deleterious(0) benign(0.041) TCGA-OL-A5D7-01 14 39651035 39651035 C G PNN Missense_Mutation p.R708G 0.39 deleterious_low_confidence(0) unknown(0) TCGA-OL-A5D7-01 15 25335144 25335144 C T SNHG14 Intron 0.40 TCGA-OL-A5D7-01 15 49281046 49281046 T C SECISBP2L 3'UTR 0.07 TCGA-OL-A5D7-01 15 52843449 52843449 C G ARPP19 3'UTR 0.40 TCGA-OL-A5D7-01 15 84592772 84592772 C T ADAMTSL3 Missense_Mutation p.P702S 0.42 deleterious(0.04) possibly_damaging(0.672) TCGA-OL-A5D7-01 16 1535986 1535986 C T PTX4 Missense_Mutation p.G459E 0.13 tolerated(0.05) possibly_damaging(0.527) TCGA-OL-A5D7-01 16 2156483 2156483 G A PKD1 Missense_Mutation p.R2469C 0.26 possibly_damaging(0.901) TCGA-OL-A5D7-01 16 28607143 28607143 G A SULT1A2 Missense_Mutation p.R37W 0.12 tolerated(0.18) benign(0) TCGA-OL-A5D7-01 16 4815636 4815636 G A ZNF500 Missense_Mutation p.P115L 0.21 tolerated(1) probably_damaging(0.999) TCGA-OL-A5D7-01 16 50357607 50357607 A C BRD7 Missense_Mutation p.I445S 0.29 deleterious(0) benign(0.1) TCGA-OL-A5D7-01 16 53529185 53529185 C T AKTIP Missense_Mutation p.R101H 0.50 tolerated(0.07) benign(0.053) TCGA-OL-A5D7-01 17 34391649 34391649 T C CCL18 5'UTR 0.58 TCGA-OL-A5D7-01 17 45925418 45925418 G A SP6 Silent p.G126G 0.67 TCGA-OL-A5D7-01 17 72588230 72588230 T G C17orf77 Silent p.P15P 0.19 TCGA-OL-A5D7-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.52 deleterious(0) probably_damaging(0.997) TCGA-OL-A5D7-01 17 80046086 80046086 C G FASN Missense_Mutation p.K897N 0.23 deleterious(0) probably_damaging(0.934) TCGA-OL-A5D7-01 18 44113170 44113170 C T LOXHD1 Missense_Mutation p.G333R 0.63 deleterious(0) probably_damaging(1) TCGA-OL-A5D7-01 19 1112235 1112235 C G SBNO2 Missense_Mutation p.G861R 0.59 deleterious(0) probably_damaging(0.999) TCGA-OL-A5D7-01 19 42840318 42840318 C T MEGF8 Missense_Mutation p.P355L 0.10 tolerated(0.32) benign(0) TCGA-OL-A5D7-01 19 4422644 4422644 G A CHAF1A Missense_Mutation p.A367T 0.18 deleterious(0) unknown(0) TCGA-OL-A5D7-01 19 53058311 53058311 G A ZNF808 Silent p.K714K 0.15 TCGA-OL-A5D7-01 19 57765471 57765471 G A ZNF805 Silent p.V428V 0.39 TCGA-OL-A5D7-01 1 12907382 12907382 A C HNRNPCL1 Missense_Mutation p.L254R 0.11 tolerated(0.08) probably_damaging(0.924) TCGA-OL-A5D7-01 1 158908228 158908228 C A PYHIN1 Missense_Mutation p.P103T 0.20 tolerated(0.15) possibly_damaging(0.504) TCGA-OL-A5D7-01 1 171083267 171083267 G C FMO3 Silent p.G316G 0.12 TCGA-OL-A5D7-01 1 185070505 185070505 G T RNF2 3'UTR 0.23 TCGA-OL-A5D7-01 1 186304471 186304471 T A TPR Missense_Mutation p.K1637M 0.33 possibly_damaging(0.781) TCGA-OL-A5D7-01 1 19597353 19597353 C T AKR7L 5'UTR 0.10 TCGA-OL-A5D7-01 1 202127399 202127399 G A PTPN7 Silent p.D156D 0.30 TCGA-OL-A5D7-01 1 231352793 231352793 G A TRIM67 3'Flank 0.26 TCGA-OL-A5D7-01 1 248569474 248569515 CAGACTTCACTTTCATGGGGCTGTTCAACAGAAAGGAAACCT - OR2T1 In_Frame_Del p.D61_S74del 0.32 TCGA-OL-A5D7-01 1 248616356 248616356 C A OR2T2 Silent p.L86L 0.10 TCGA-OL-A5D7-01 1 35928260 35928260 A T KIAA0319L Missense_Mutation p.I419N 0.46 deleterious(0) probably_damaging(0.997) TCGA-OL-A5D7-01 1 39748905 39748905 G A MACF1 Missense_Mutation p.R252Q 0.10 possibly_damaging(0.861) TCGA-OL-A5D7-01 1 39880169 39880169 C G KIAA0754 Missense_Mutation p.S1275C 0.10 unknown(0) TCGA-OL-A5D7-01 1 44437411 44437411 A G DPH2 Silent p.R279R 0.11 TCGA-OL-A5D7-01 20 10273586 10273586 G T SNAP25 Intron 0.69 TCGA-OL-A5D7-01 20 19664897 19664897 G C SLC24A3 Missense_Mutation p.E327Q 0.44 deleterious(0.02) probably_damaging(0.954) TCGA-OL-A5D7-01 20 30803131 30803131 C T POFUT1 Silent p.V102V 0.22 TCGA-OL-A5D7-01 21 33065714 33065714 C G SCAF4 Missense_Mutation p.R469T 0.38 benign(0.227) TCGA-OL-A5D7-01 22 39918397 39918398 - A ATF4 Frame_Shift_Ins p.M285Nfs*10 0.36 TCGA-OL-A5D7-01 2 113299961 113299961 A G POLR1B 5'UTR 0.12 TCGA-OL-A5D7-01 2 165755107 165755107 A T SLC38A11 Missense_Mutation p.V354D 0.12 deleterious(0.01) possibly_damaging(0.653) TCGA-OL-A5D7-01 2 179466507 179466507 G A TTN Missense_Mutation p.T18437I 0.26 TCGA-OL-A5D7-01 2 185803983 185803983 T C ZNF804A 3'UTR 0.31 TCGA-OL-A5D7-01 2 225265995 225265995 G A FAM124B Missense_Mutation p.A164V 0.12 deleterious(0.04) possibly_damaging(0.602) TCGA-OL-A5D7-01 2 29004694 29004694 T G PPP1CB Missense_Mutation p.F169C 0.37 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-OL-A5D7-01 2 97815094 97815094 C A ANKRD36 Missense_Mutation p.S366Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-OL-A5D7-01 3 108156455 108156455 T C MYH15 Missense_Mutation p.E1076G 0.20 deleterious(0.01) benign(0.003) TCGA-OL-A5D7-01 3 122414427 122414427 C G PARP14 Silent p.P251P 0.14 TCGA-OL-A5D7-01 3 131219335 131219335 T A MRPL3 Missense_Mutation p.K103M 0.60 deleterious(0) probably_damaging(1) TCGA-OL-A5D7-01 3 50224045 50224045 G C SEMA3F Splice_Site p.X605_splice 0.44 TCGA-OL-A5D7-01 4 177608425 177608425 T C VEGFC Missense_Mutation p.N354S 0.39 deleterious(0) probably_damaging(0.998) TCGA-OL-A5D7-01 4 71068004 71068004 T G ODAM Silent p.A202A 0.17 TCGA-OL-A5D7-01 5 176524387 176524387 G A FGFR4 Missense_Mutation p.V750I 0.23 tolerated(0.13) benign(0.005) TCGA-OL-A5D7-01 5 314783 314783 G C PDCD6 3'UTR 0.13 TCGA-OL-A5D7-01 6 28541421 28541421 C A SCAND3 Missense_Mutation p.V749L 0.18 tolerated_low_confidence(0.1) benign(0.009) TCGA-OL-A5D7-01 6 34214299 34214299 A G C6orf1 Missense_Mutation p.F158L 0.24 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-OL-A5D7-01 6 89322295 89322295 A C RNGTT 3'UTR 0.26 TCGA-OL-A5D7-01 7 110764875 110764875 C T LRRN3 Missense_Mutation p.L683F 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-OL-A5D7-01 8 141468379 141468379 C G TRAPPC9 Splice_Site p.X95_splice 0.68 TCGA-OL-A5D7-01 8 48825111 48825125 ACAGGCTGCAACCTA - PRKDC Splice_Site p.X928_splice 0.40 TCGA-OL-A5D7-01 8 91637275 91637275 G C TMEM64 3'UTR 0.35 TCGA-OL-A5D7-01 9 123943654 123943654 G T RAB14 3'UTR 0.46 TCGA-OL-A5D7-01 9 70972070 70972070 G C PGM5 Silent p.L9L 0.17 TCGA-OL-A5D7-01 9 84533770 84533770 T A SPATA31D5P RNA 0.17 TCGA-OL-A5D7-01 X 17750269 17750269 A G NHS Silent p.K1526K 0.09 TCGA-OL-A5D7-01 X 2843705 2843706 - C ARSD Frame_Shift_Ins p.D49Gfs*2 0.09 TCGA-OL-A5D7-01 X 39922993 39922993 G T BCOR Missense_Mutation p.Q1239K 0.28 tolerated(0.2) probably_damaging(0.974) TCGA-OL-A5D7-01 X 44833952 44833952 T - KDM6A Frame_Shift_Del p.Y126Tfs*54 0.33 TCGA-OL-A5D8-01 10 35314087 35314087 G T CUL2 Missense_Mutation p.L572I 0.41 deleterious(0.03) benign(0.134) TCGA-OL-A5D8-01 10 8106093 8106094 - G GATA3 Frame_Shift_Ins p.R307Kfs*46 0.29 TCGA-OL-A5D8-01 10 81697500 81697500 C T SFTPD 3'UTR 0.44 TCGA-OL-A5D8-01 11 111156557 111156557 G A C11orf53 Silent p.S163S 0.67 TCGA-OL-A5D8-01 11 67184989 67184989 C T CARNS1 Missense_Mutation p.P39S 0.35 tolerated_low_confidence(0.36) benign(0.015) TCGA-OL-A5D8-01 12 131360478 131360478 A C RAN 3'UTR 0.29 TCGA-OL-A5D8-01 12 50055828 50055828 C G FMNL3 Missense_Mutation p.V125L 0.38 deleterious(0.01) possibly_damaging(0.501) TCGA-OL-A5D8-01 12 55688853 55688853 G A OR6C6 Missense_Mutation p.T55M 0.31 deleterious_low_confidence(0.01) benign(0.149) TCGA-OL-A5D8-01 14 21794169 21794169 C - RPGRIP1 Frame_Shift_Del p.Q850Rfs*8 0.28 TCGA-OL-A5D8-01 15 29346952 29346952 G A APBA2 Missense_Mutation p.E289K 0.31 tolerated_low_confidence(0.42) benign(0.048) TCGA-OL-A5D8-01 16 54319430 54319431 GC - IRX3 Frame_Shift_Del p.G121Afs*69 0.52 TCGA-OL-A5D8-01 16 86585647 86585647 C T MTHFSD Missense_Mutation p.V77M 0.10 deleterious(0.02) benign(0.13) TCGA-OL-A5D8-01 17 15965426 15965426 G A NCOR1 Nonsense_Mutation p.R1794* 0.47 TCGA-OL-A5D8-01 18 15316608 15316608 C G RNU6-721P 3'Flank 0.13 TCGA-OL-A5D8-01 18 44040338 44040338 A - RNF165 3'UTR 0.30 TCGA-OL-A5D8-01 18 47017223 47017223 A C RPL17 Silent p.T52T 0.27 TCGA-OL-A5D8-01 18 55274371 55274371 C G NARS Silent p.L332L 0.38 TCGA-OL-A5D8-01 18 63529956 63529956 C A CDH7 Nonsense_Mutation p.S556* 0.39 TCGA-OL-A5D8-01 19 22939820 22939820 T C ZNF99 3'Flank 0.15 TCGA-OL-A5D8-01 19 33791407 33791407 C T CEBPA 3'UTR 0.35 TCGA-OL-A5D8-01 1 149898647 149898648 AG - SF3B4 Frame_Shift_Del p.P109Rfs*3 0.14 TCGA-OL-A5D8-01 1 150783784 150783784 T C ARNT 3'UTR 0.18 TCGA-OL-A5D8-01 1 171810661 171810661 C T DNM3 5'UTR 0.15 TCGA-OL-A5D8-01 1 186086186 186086186 T A HMCN1 Nonsense_Mutation p.Y3874* 0.30 TCGA-OL-A5D8-01 1 215795108 215795111 TATT - KCTD3 3'UTR 0.34 TCGA-OL-A5D8-01 1 220936309 220936309 T C MARC2 Silent p.L223L 0.50 TCGA-OL-A5D8-01 21 44450390 44450390 T C PKNOX1 3'UTR 0.21 TCGA-OL-A5D8-01 21 45821603 45821603 C T TRPM2 Silent p.R787R 0.54 TCGA-OL-A5D8-01 22 37767233 37767233 G A ELFN2 3'UTR 0.31 TCGA-OL-A5D8-01 2 18112885 18112885 G T KCNS3 Missense_Mutation p.V204F 0.20 tolerated(0.07) benign(0.389) TCGA-OL-A5D8-01 2 24949504 24949504 A T NCOA1 Missense_Mutation p.Q882H 0.20 deleterious(0.05) possibly_damaging(0.77) TCGA-OL-A5D8-01 2 31483605 31483605 G A EHD3 Silent p.V244V 0.50 TCGA-OL-A5D8-01 2 31489433 31489433 G A EHD3 Missense_Mutation p.D491N 0.54 deleterious(0.02) probably_damaging(0.994) TCGA-OL-A5D8-01 2 31489590 31489590 G C EHD3 3'UTR 0.59 TCGA-OL-A5D8-01 2 31573005 31573005 G A XDH Missense_Mutation p.L906F 0.10 deleterious(0) probably_damaging(0.97) TCGA-OL-A5D8-01 5 133726628 133726628 A T UBE2B 3'UTR 0.41 TCGA-OL-A5D8-01 6 62390592 62390593 - A KHDRBS2 3'UTR 0.36 TCGA-OL-A5D8-01 7 107601724 107601724 G A LAMB1 Missense_Mutation p.T679M 0.41 deleterious(0) probably_damaging(0.993) TCGA-OL-A5D8-01 8 10468681 10468681 G A RP1L1 Missense_Mutation p.A976V 0.41 benign(0.001) TCGA-OL-A5D8-01 9 120475369 120475369 A C TLR4 Missense_Mutation p.E321D 0.31 tolerated(0.58) benign(0) TCGA-OL-A5D8-01 X 10201912 10201912 T C CLCN4 3'UTR 0.48 TCGA-OL-A5D8-01 X 119004944 119004944 G A RNF113A Silent p.C211C 0.40 TCGA-OL-A5D8-01 X 12940143 12940143 G A TLR8 Missense_Mutation p.R995Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-OL-A5D8-01 X 155171630 155171630 C T VAMP7 Missense_Mutation p.P204S 0.03 unknown(0) TCGA-OL-A5D8-01 X 31198556 31198556 G T DMD Missense_Mutation p.S3339R 0.35 possibly_damaging(0.504) TCGA-OL-A5D8-01 X 48681345 48681345 T A HDAC6 Missense_Mutation p.S846T 0.45 tolerated(0.39) benign(0.006) TCGA-OL-A5DA-01 10 128935449 128935449 C G FAM196A 3'UTR 0.09 TCGA-OL-A5DA-01 10 16990571 16990571 G A CUBN Silent p.I1705I 0.14 TCGA-OL-A5DA-01 10 70452091 70452091 G A TET1 3'UTR 0.09 TCGA-OL-A5DA-01 11 102585289 102585289 C A MMP8 Missense_Mutation p.W396C 0.16 deleterious(0) probably_damaging(1) TCGA-OL-A5DA-01 11 117158716 117158716 C G BACE1 3'UTR 0.19 TCGA-OL-A5DA-01 11 1264475 1264475 C G MUC5B Missense_Mutation p.S2122C 0.09 unknown(0) TCGA-OL-A5DA-01 11 46774979 46774979 G A CKAP5 Silent p.L1646L 0.09 TCGA-OL-A5DA-01 11 57466134 57466134 C G ZDHHC5 Missense_Mutation p.S409C 0.24 deleterious(0.01) probably_damaging(0.921) TCGA-OL-A5DA-01 11 6740407 6740407 A G GVINP1 RNA 0.32 TCGA-OL-A5DA-01 11 70279792 70279792 T G CTTN Missense_Mutation p.I458S 0.26 deleterious(0.01) benign(0.424) TCGA-OL-A5DA-01 12 100732630 100732630 C T SCYL2 Missense_Mutation p.P824S 0.31 tolerated(0.88) benign(0) TCGA-OL-A5DA-01 12 120941545 120941545 C T COQ5 3'UTR 0.11 TCGA-OL-A5DA-01 12 121001262 121001262 C T RNF10 Missense_Mutation p.S456F 0.06 tolerated(0.07) benign(0.001) TCGA-OL-A5DA-01 12 33021967 33021967 C T PKP2 Missense_Mutation p.R355Q 0.11 deleterious(0.02) possibly_damaging(0.872) TCGA-OL-A5DA-01 12 988982 988982 C T WNK1 Silent p.L873L 0.13 TCGA-OL-A5DA-01 13 24797136 24797136 C T SPATA13 Silent p.L23L 0.06 TCGA-OL-A5DA-01 13 29284961 29284961 G A SLC46A3 Silent p.F360F 0.24 TCGA-OL-A5DA-01 14 101393688 101393688 C A SNORD113-2 RNA 0.09 TCGA-OL-A5DA-01 14 69254593 69254593 C G ZFP36L1 3'UTR 0.16 TCGA-OL-A5DA-01 14 81259238 81259238 C G CEP128 Missense_Mutation p.E476Q 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-OL-A5DA-01 15 65116036 65116036 G A PIF1 Missense_Mutation p.P167S 0.10 tolerated(0.22) benign(0.004) TCGA-OL-A5DA-01 15 68631949 68631949 C G ITGA11 Missense_Mutation p.D389H 0.20 deleterious(0) probably_damaging(0.967) TCGA-OL-A5DA-01 15 74467586 74467586 G A ISLR Missense_Mutation p.M129I 0.15 deleterious(0) benign(0.197) TCGA-OL-A5DA-01 15 86284594 86284594 G C AKAP13 Missense_Mutation p.Q2646H 0.14 tolerated(0.12) benign(0.022) TCGA-OL-A5DA-01 16 30217279 30217279 G T RP11-347C12.3 Missense_Mutation p.H326N 0.15 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-OL-A5DA-01 16 57719564 57719564 C T GPR97 Silent p.F422F 0.19 TCGA-OL-A5DA-01 17 55023818 55023818 G C COIL Missense_Mutation p.L515V 0.14 deleterious(0.03) possibly_damaging(0.848) TCGA-OL-A5DA-01 17 7755569 7755569 C T KDM6B Silent p.L1461L 0.06 TCGA-OL-A5DA-01 18 43675009 43675009 A C ATP5A1 Intron 0.33 TCGA-OL-A5DA-01 18 50451659 50451659 G C DCC Missense_Mutation p.D302H 0.07 tolerated(0.06) probably_damaging(0.97) TCGA-OL-A5DA-01 18 50451672 50451672 G A DCC Missense_Mutation p.G306E 0.10 deleterious(0.01) probably_damaging(1) TCGA-OL-A5DA-01 18 77895022 77895022 C T ADNP2 Silent p.L576L 0.11 TCGA-OL-A5DA-01 19 10747167 10747167 C T SLC44A2 Silent p.L468L 0.26 TCGA-OL-A5DA-01 19 11833339 11833339 C T ZNF823 Missense_Mutation p.C337Y 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-OL-A5DA-01 19 16652789 16652789 C G CHERP Missense_Mutation p.E31Q 0.11 deleterious(0) probably_damaging(0.982) TCGA-OL-A5DA-01 19 22784309 22784309 G C AC011467.1 5'Flank 0.10 TCGA-OL-A5DA-01 19 30934683 30934683 A T ZNF536 Missense_Mutation p.M72L 0.34 tolerated_low_confidence(1) benign(0) TCGA-OL-A5DA-01 19 46825083 46825083 G A HIF3A Missense_Mutation p.E399K 0.11 tolerated(0.17) probably_damaging(0.979) TCGA-OL-A5DA-01 19 50945508 50945508 C T MYBPC2 Silent p.I280I 0.20 TCGA-OL-A5DA-01 19 51742967 51742967 C G CD33 3'UTR 0.16 TCGA-OL-A5DA-01 19 51840606 51840606 G A VSIG10L Missense_Mutation p.R731W 0.30 deleterious(0) probably_damaging(1) TCGA-OL-A5DA-01 19 7523439 7523439 G C ARHGEF18 Silent p.V553V 0.09 TCGA-OL-A5DA-01 19 8127149 8127149 G A CCL25 3'UTR 0.13 TCGA-OL-A5DA-01 19 9057901 9057901 C T MUC16 Missense_Mutation p.V9849M 0.14 unknown(0) TCGA-OL-A5DA-01 1 157514053 157514053 C G FCRL5 Missense_Mutation p.Q281H 0.10 tolerated(0.06) benign(0.097) TCGA-OL-A5DA-01 1 203018862 203018862 G A PPFIA4 5'Flank 0.29 TCGA-OL-A5DA-01 1 21809855 21809855 G C NBPF3 Missense_Mutation p.Q626H 0.17 tolerated_low_confidence(0.14) benign(0) TCGA-OL-A5DA-01 1 222717464 222717464 G T HHIPL2 Missense_Mutation p.P130Q 0.36 deleterious(0) probably_damaging(1) TCGA-OL-A5DA-01 1 236883462 236883462 G A ACTN2 Missense_Mutation p.R140H 0.09 deleterious(0) probably_damaging(0.989) TCGA-OL-A5DA-01 1 237550637 237550637 C G RYR2 Silent p.L211L 0.13 TCGA-OL-A5DA-01 1 247014021 247014021 C G AHCTF1 Missense_Mutation p.A1772P 0.08 tolerated(0.17) possibly_damaging(0.653) TCGA-OL-A5DA-01 1 47101154 47101154 G C ATPAF1 3'UTR 0.24 TCGA-OL-A5DA-01 1 49119117 49119117 A G AGBL4 Missense_Mutation p.I244T 0.37 deleterious(0.05) probably_damaging(0.978) TCGA-OL-A5DA-01 1 57285049 57285049 C G C1orf168 5'Flank 0.11 TCGA-OL-A5DA-01 1 97915764 97915764 C A DPYD Missense_Mutation p.V586F 0.09 deleterious(0) probably_damaging(0.985) TCGA-OL-A5DA-01 20 2779433 2779433 G A CPXM1 Silent p.A93A 0.18 TCGA-OL-A5DA-01 20 51872795 51872795 C T TSHZ2 Missense_Mutation p.S933F 0.13 deleterious(0) probably_damaging(0.999) TCGA-OL-A5DA-01 20 52184421 52184421 G A ZNF217 3'UTR 0.10 TCGA-OL-A5DA-01 20 62337726 62337726 G A ARFRP1 Nonsense_Mutation p.Q83* 0.24 TCGA-OL-A5DA-01 22 17590709 17590709 G A IL17RA Silent p.%3D 0.33 TCGA-OL-A5DA-01 22 18273376 18273376 C T MICAL3 3'UTR 0.29 TCGA-OL-A5DA-01 22 36708234 36708234 C T MYH9 Missense_Mutation p.E530K 0.34 probably_damaging(0.976) TCGA-OL-A5DA-01 2 160088843 160088843 G C TANC1 3'UTR 0.11 TCGA-OL-A5DA-01 2 169851965 169851965 G A ABCB11 Missense_Mutation p.R169C 0.23 deleterious(0) probably_damaging(0.971) TCGA-OL-A5DA-01 2 217543752 217543752 C T IGFBP5 Missense_Mutation p.E130K 0.14 tolerated(0.46) benign(0.013) TCGA-OL-A5DA-01 2 219920403 219920403 C G IHH Silent p.L254L 0.09 TCGA-OL-A5DA-01 2 235964257 235964257 A G SH3BP4 3'UTR 0.22 TCGA-OL-A5DA-01 2 27682370 27682370 C T IFT172 Missense_Mutation p.E888K 0.06 tolerated(0.07) benign(0.273) TCGA-OL-A5DA-01 2 61765242 61765242 C G XPO1 5'UTR 0.10 TCGA-OL-A5DA-01 2 65237810 65237810 A C SLC1A4 Missense_Mutation p.K238T 0.21 tolerated(0.07) probably_damaging(0.948) TCGA-OL-A5DA-01 2 74683376 74683376 G A INO80B Missense_Mutation p.E173K 0.21 tolerated(0.13) probably_damaging(0.98) TCGA-OL-A5DA-01 3 110612285 110612285 T A RP11-553A10.1 5'UTR 0.24 TCGA-OL-A5DA-01 3 13544400 13544400 G A HDAC11 Missense_Mutation p.R190Q 0.34 deleterious(0.02) probably_damaging(0.912) TCGA-OL-A5DA-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.21 tolerated(0.06) possibly_damaging(0.801) TCGA-OL-A5DA-01 3 179322684 179322684 C T NDUFB5 Silent p.L27L 0.10 TCGA-OL-A5DA-01 3 196096354 196096354 C G UBXN7 Missense_Mutation p.R215T 0.13 deleterious(0) possibly_damaging(0.847) TCGA-OL-A5DA-01 3 49698153 49698153 C T BSN Missense_Mutation p.R2959C 0.19 unknown(0) TCGA-OL-A5DA-01 3 55502746 55502746 C T WNT5A 3'UTR 0.19 TCGA-OL-A5DA-01 3 98001967 98001967 C T OR5H2 Missense_Mutation p.S79F 0.10 deleterious(0) probably_damaging(0.992) TCGA-OL-A5DA-01 4 113578518 113578518 G C LARP7 3'UTR 0.10 TCGA-OL-A5DA-01 4 68492133 68492133 C T UBA6 Silent p.E821E 0.14 TCGA-OL-A5DA-01 4 71848059 71848059 G A MOB1B 3'Flank 0.31 TCGA-OL-A5DA-01 4 77958863 77958863 C T SEPT11 3'UTR 0.32 TCGA-OL-A5DA-01 4 7802238 7802238 C T AFAP1 Silent p.P399P 0.12 TCGA-OL-A5DA-01 5 14507272 14507272 G A TRIO Missense_Mutation p.G2885E 0.26 unknown(0) TCGA-OL-A5DA-01 5 149406614 149406614 G A HMGXB3 Silent p.L556L 0.16 TCGA-OL-A5DA-01 5 177641822 177641822 C T PHYKPL Missense_Mutation p.E383K 0.19 tolerated(0.38) benign(0.003) TCGA-OL-A5DA-01 5 65466528 65466528 A T SREK1 Nonsense_Mutation p.K413* 0.21 TCGA-OL-A5DA-01 6 117645522 117645522 G C ROS1 Missense_Mutation p.L1872V 0.07 tolerated(0.17) benign(0.049) TCGA-OL-A5DA-01 6 26271219 26271219 G A HIST1H3G Missense_Mutation p.R132C 0.15 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-OL-A5DA-01 6 38862525 38862525 C T DNAH8 Nonsense_Mutation p.R2661* 0.07 TCGA-OL-A5DA-01 6 39046890 39046890 G A GLP1R Silent p.V319V 0.12 TCGA-OL-A5DA-01 6 39847133 39847133 C T DAAM2 Silent p.L575L 0.19 TCGA-OL-A5DA-01 6 43034052 43034052 G T KLC4 Missense_Mutation p.G212C 0.44 deleterious(0) possibly_damaging(0.678) TCGA-OL-A5DA-01 7 12689089 12689089 C T SCIN Intron 0.28 TCGA-OL-A5DA-01 7 149317094 149317094 C A ZNF767 RNA 0.16 TCGA-OL-A5DA-01 7 152513660 152513660 A G ACTR3B Missense_Mutation p.H176R 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-OL-A5DA-01 7 42957235 42957235 C T PSMA2 Missense_Mutation p.E215K 0.15 tolerated(0.36) benign(0.002) TCGA-OL-A5DA-01 8 12579733 12579733 T A LONRF1 3'UTR 0.52 TCGA-OL-A5DA-01 8 145739720 145739720 C T RECQL4 Silent p.L577L 0.16 TCGA-OL-A5DA-01 8 22005514 22005514 C T LGI3 3'UTR 0.17 TCGA-OL-A5DA-01 8 2975988 2975988 G A CSMD1 Silent p.G2121G 0.25 TCGA-OL-A5DA-01 9 119203021 119203021 C G ASTN2 Missense_Mutation p.E1166Q 0.08 deleterious(0.01) unknown(0) TCGA-OL-A5DA-01 9 121930022 121930022 G A BRINP1 Silent p.I542I 0.13 TCGA-OL-A5DA-01 9 140773569 140773569 G A CACNA1B Silent p.Q116Q 0.07 TCGA-OL-A5DA-01 X 103360247 103360247 G C ZCCHC18 3'UTR 0.24 TCGA-OL-A5DA-01 X 35820503 35820503 G A MAGEB16 Missense_Mutation p.V64I 0.21 deleterious(0.04) benign(0.01) TCGA-OL-A5DA-01 X 37301350 37301350 C T PRRG1 Intron 0.14 TCGA-OL-A5DA-01 X 48399820 48399820 G C TBC1D25 Missense_Mutation p.D75H 0.14 deleterious(0.04) probably_damaging(0.972) TCGA-OL-A5DA-01 X 65242601 65242601 C A VSIG4 Intron 0.10 TCGA-OL-A5DA-01 X 70613945 70613945 A G TAF1 Missense_Mutation p.T1106A 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-OL-A5DA-01 X 91133194 91133194 C T PCDH11X Missense_Mutation p.S652L 0.16 deleterious(0) possibly_damaging(0.665) TCGA-OL-A5DA-01 X 9859132 9859132 G A SHROOM2 Missense_Mutation p.G145S 0.36 tolerated(1) benign(0.001) TCGA-OL-A5DA-01 X 9863124 9863124 C T SHROOM2 Silent p.H392H 0.11 TCGA-OL-A5RU-01 10 14968884 14968884 A G DCLRE1C Silent p.S310S 0.21 TCGA-OL-A5RU-01 11 78383219 78383219 G A TENM4 Silent p.N1884N 0.08 TCGA-OL-A5RU-01 12 117696233 117696233 T C NOS1 Missense_Mutation p.R834G 0.06 deleterious(0.02) benign(0.068) TCGA-OL-A5RU-01 12 130827204 130827204 G A PIWIL1 Missense_Mutation p.G23D 0.17 tolerated(0.15) probably_damaging(0.982) TCGA-OL-A5RU-01 12 54449717 54449717 A G HOXC4 3'UTR 0.24 TCGA-OL-A5RU-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.36 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RU-01 14 19985085 19985085 G A POTEM 3'UTR 0.22 TCGA-OL-A5RU-01 14 24884665 24884665 G A NYNRIN Missense_Mutation p.R1237Q 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-OL-A5RU-01 15 57384057 57384057 C - TCF12 Frame_Shift_Del p.P99Qfs*5 0.22 TCGA-OL-A5RU-01 15 59752151 59752151 C T FAM81A Nonsense_Mutation p.R14* 0.16 TCGA-OL-A5RU-01 16 20873624 20873624 G A DCUN1D3 Silent p.S79S 0.19 TCGA-OL-A5RU-01 16 420169 420169 C T MRPL28 Missense_Mutation p.R17Q 0.32 tolerated_low_confidence(0.27) benign(0.005) TCGA-OL-A5RU-01 16 77228780 77228780 C T MON1B Missense_Mutation p.R342C 0.21 deleterious(0.01) possibly_damaging(0.791) TCGA-OL-A5RU-01 17 25635525 25635525 G C WSB1 Intron 0.20 TCGA-OL-A5RU-01 17 54543866 54543866 C A ANKFN1 Missense_Mutation p.S572R 0.18 tolerated(0.46) benign(0.012) TCGA-OL-A5RU-01 17 5485305 5485305 C T NLRP1 Missense_Mutation p.A176T 0.24 tolerated(0.23) benign(0.033) TCGA-OL-A5RU-01 17 65914930 65914930 C T BPTF Missense_Mutation p.P1802S 0.12 possibly_damaging(0.551) TCGA-OL-A5RU-01 17 7317987 7317987 C G NLGN2 Missense_Mutation p.L222V 0.18 deleterious(0) benign(0.227) TCGA-OL-A5RU-01 17 79082992 79082993 CT - BAIAP2 Intron 0.15 TCGA-OL-A5RU-01 1 152800194 152800194 C T LCE1A Silent p.L82L 0.11 TCGA-OL-A5RU-01 1 16945217 16945217 C G RP5-1182A14.5 3'Flank 0.18 TCGA-OL-A5RU-01 1 16946229 16946229 G A RP5-1182A14.5 3'Flank 0.08 TCGA-OL-A5RU-01 1 182359762 182359762 G A GLUL 5'UTR 0.15 TCGA-OL-A5RU-01 1 237604745 237604745 G A RYR2 Missense_Mutation p.D378N 0.54 probably_damaging(0.979) TCGA-OL-A5RU-01 1 237675055 237675055 G A RYR2 Missense_Mutation p.R929H 0.10 probably_damaging(0.961) TCGA-OL-A5RU-01 20 30733013 30733013 G A TM9SF4 Splice_Site p.X257_splice 0.13 TCGA-OL-A5RU-01 2 39185243 39185243 C G ARHGEF33 Missense_Mutation p.P480R 0.19 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-OL-A5RU-01 2 48026449 48026449 G A MSH6 Missense_Mutation p.G443R 0.17 deleterious(0) probably_damaging(1) TCGA-OL-A5RU-01 2 55775978 55775978 T A SMEK2 3'UTR 0.17 TCGA-OL-A5RU-01 2 74074806 74074806 C - STAMBP Frame_Shift_Del p.T223Kfs*3 0.26 TCGA-OL-A5RU-01 3 36872931 36872931 G A TRANK1 Missense_Mutation p.R2671W 0.21 tolerated(0.2) benign(0.003) TCGA-OL-A5RU-01 4 100057690 100057690 G T ADH4 Missense_Mutation p.A170E 0.20 deleterious(0) probably_damaging(0.971) TCGA-OL-A5RU-01 4 166963248 166963248 G A TLL1 Missense_Mutation p.R444H 0.34 tolerated(0.07) benign(0.358) TCGA-OL-A5RU-01 4 76584088 76584088 G A G3BP2 Missense_Mutation p.S39F 0.23 deleterious(0) probably_damaging(0.998) TCGA-OL-A5RU-01 4 77227887 77227887 G A FAM47E-STBD1 5'UTR 0.18 TCGA-OL-A5RU-01 4 8621249 8621249 C T CPZ Missense_Mutation p.R622C 0.14 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-OL-A5RU-01 5 133537617 133537617 T - PPP2CA Frame_Shift_Del p.K136Nfs*39 0.21 TCGA-OL-A5RU-01 5 45259661 45259661 T C HCN1 3'UTR 0.21 TCGA-OL-A5RU-01 6 107475939 107475939 T C PDSS2 Missense_Mutation p.I362V 0.17 tolerated(1) benign(0.005) TCGA-OL-A5RU-01 6 30919390 30919390 C T DPCR1 Missense_Mutation p.S1050L 0.12 tolerated(0.15) benign(0.245) TCGA-OL-A5RU-01 7 50737517 50737517 G C GRB10 Missense_Mutation p.P136A 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-OL-A5RU-01 7 98931019 98931019 G T ARPC1A Missense_Mutation p.A15S 0.19 tolerated(0.23) benign(0.373) TCGA-OL-A5RU-01 8 124206276 124206276 C T FAM83A Missense_Mutation p.R221W 0.16 deleterious(0) probably_damaging(1) TCGA-OL-A5RU-01 8 95893854 95893854 T A CCNE2 3'UTR 0.31 TCGA-OL-A5RU-01 9 135558984 135558984 A G GTF3C4 Missense_Mutation p.K740R 0.05 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OL-A5RU-01 9 73213516 73213516 G A TRPM3 Missense_Mutation p.T944M 0.06 tolerated(0.11) probably_damaging(0.96) TCGA-OL-A5RU-01 9 94487297 94487297 G T ROR2 Missense_Mutation p.F493L 0.24 tolerated(0.5) benign(0.001) TCGA-OL-A5RU-01 X 101971061 101971061 G A GPRASP2 Missense_Mutation p.A422T 0.15 tolerated(0.36) benign(0) TCGA-OL-A5RU-01 X 53265540 53265540 C T IQSEC2 Missense_Mutation p.A1139T 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-OL-A5RU-01 X 67752054 67752054 T A YIPF6 3'UTR 0.30 TCGA-OL-A5RV-01 10 35842095 35842095 A C CCNY Missense_Mutation p.D243A 0.16 deleterious(0) benign(0.433) TCGA-OL-A5RV-01 11 118242237 118242237 C T UBE4A Silent p.F139F 0.28 TCGA-OL-A5RV-01 11 5364309 5364309 C T OR51B5 Missense_Mutation p.R149K 0.21 deleterious(0.03) possibly_damaging(0.654) TCGA-OL-A5RV-01 12 100897138 100897138 A C NR1H4 5'UTR 0.16 TCGA-OL-A5RV-01 14 22887373 22887373 C T TRDV2 5'Flank 0.09 TCGA-OL-A5RV-01 15 33445437 33445437 C G FMN1 Missense_Mutation p.R560P 0.25 tolerated(0.1) benign(0.376) TCGA-OL-A5RV-01 19 55451644 55451644 G A NLRP7 Silent p.G181G 0.25 TCGA-OL-A5RV-01 21 36252998 36252998 C G RUNX1 Missense_Mutation p.G122R 0.13 deleterious(0) probably_damaging(1) TCGA-OL-A5RV-01 22 31008889 31008889 G A TCN2 Missense_Mutation p.C96Y 0.16 tolerated(1) benign(0.003) TCGA-OL-A5RV-01 2 138772114 138772114 G A HNMT 3'UTR 0.07 TCGA-OL-A5RV-01 3 115395232 115395232 G A GAP43 Missense_Mutation p.A171T 0.21 tolerated(0.13) benign(0.22) TCGA-OL-A5RV-01 4 175897515 175897515 G A ADAM29 Missense_Mutation p.R280Q 0.06 deleterious(0) possibly_damaging(0.833) TCGA-OL-A5RV-01 7 150174788 150174788 G A GIMAP8 Missense_Mutation p.V640I 0.20 tolerated(0.78) benign(0.082) TCGA-OL-A5RV-01 7 28865169 28865169 T C CREB5 3'UTR 0.25 TCGA-OL-A5RV-01 9 27950323 27950323 C T LINGO2 Missense_Mutation p.R116H 0.19 tolerated(0.09) possibly_damaging(0.749) TCGA-OL-A5RV-01 9 72841373 72841373 C T MAMDC2 3'UTR 0.23 TCGA-OL-A5RV-01 X 47775907 47775907 A T ZNF81 Missense_Mutation p.D621V 0.37 deleterious(0) probably_damaging(1) TCGA-OL-A5RW-01 10 120802126 120802126 C G EIF3A Missense_Mutation p.R969T 0.69 deleterious(0.02) probably_damaging(0.972) TCGA-OL-A5RW-01 10 129902171 129902171 C G MKI67 Missense_Mutation p.V2645L 0.04 tolerated(0.21) benign(0.097) TCGA-OL-A5RW-01 10 134691551 134691551 C G TTC40 Missense_Mutation p.R1349T 0.11 tolerated(0.14) benign(0.068) TCGA-OL-A5RW-01 10 135347295 135347295 C A CYP2E1 Missense_Mutation p.D287E 0.71 tolerated(1) benign(0.004) TCGA-OL-A5RW-01 10 35495832 35495832 G T CREM Missense_Mutation p.G203V 0.28 deleterious(0) probably_damaging(0.982) TCGA-OL-A5RW-01 10 76924488 76924488 C G SAMD8 Missense_Mutation p.H222D 0.22 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RW-01 11 108126963 108126963 G C ATM Missense_Mutation p.V716L 0.86 deleterious(0.05) benign(0.035) TCGA-OL-A5RW-01 11 129754643 129754643 C T NFRKB Missense_Mutation p.A272T 0.07 tolerated(0.29) unknown(0) TCGA-OL-A5RW-01 11 31531298 31531298 G T ELP4 5'UTR 0.67 TCGA-OL-A5RW-01 11 3392236 3392236 C T ZNF195 Silent p.V65V 0.49 TCGA-OL-A5RW-01 11 47289890 47289890 C G NR1H3 Missense_Mutation p.S394C 0.22 tolerated(0.09) benign(0.007) TCGA-OL-A5RW-01 11 49831933 49831933 T C RP11-707M1.1 RNA 0.33 TCGA-OL-A5RW-01 11 5322396 5322396 A T OR51B4 Missense_Mutation p.F261I 0.40 deleterious(0) probably_damaging(0.989) TCGA-OL-A5RW-01 11 5345567 5345567 G A OR51B2 5'UTR 0.25 TCGA-OL-A5RW-01 11 63527352 63527352 A C RTN3 3'UTR 0.18 TCGA-OL-A5RW-01 11 65413412 65413412 C G SIPA1 Missense_Mutation p.P416R 0.45 deleterious(0) probably_damaging(0.998) TCGA-OL-A5RW-01 11 66276616 66276616 G A DPP3 Missense_Mutation p.R703H 0.57 deleterious(0) probably_damaging(0.949) TCGA-OL-A5RW-01 11 70317573 70317573 C T SHANK2 3'UTR 0.33 TCGA-OL-A5RW-01 12 111162536 111162536 G C PPP1CC Missense_Mutation p.T151S 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.479) TCGA-OL-A5RW-01 12 125550166 125550166 C A AACS Silent p.I12I 0.19 TCGA-OL-A5RW-01 12 20833499 20833499 A G PDE3A 3'UTR 0.67 TCGA-OL-A5RW-01 12 22839598 22839598 T C ETNK1 3'UTR 0.32 TCGA-OL-A5RW-01 12 2797736 2797736 C T CACNA1C Missense_Mutation p.P2018S 0.45 deleterious_low_confidence(0) benign(0.011) TCGA-OL-A5RW-01 12 3131102 3131102 C G TEAD4 Missense_Mutation p.D272E 0.42 tolerated(0.11) probably_damaging(0.999) TCGA-OL-A5RW-01 12 52388827 52388827 A G ACVR1B 3'Flank 0.29 TCGA-OL-A5RW-01 12 55422794 55422794 C - NEUROD4 3'UTR 0.45 TCGA-OL-A5RW-01 12 56351273 56351273 G A PMEL Missense_Mutation p.R272W 0.82 deleterious(0) probably_damaging(1) TCGA-OL-A5RW-01 12 74932938 74932939 GA - ATXN7L3B 3'UTR 0.08 TCGA-OL-A5RW-01 12 86373047 86373047 G A MGAT4C 3'UTR 0.17 TCGA-OL-A5RW-01 13 52952529 52952529 G A THSD1 Missense_Mutation p.P526S 0.81 tolerated(0.07) probably_damaging(1) TCGA-OL-A5RW-01 14 102368210 102368210 C A PPP2R5C Missense_Mutation p.S367Y 0.35 deleterious(0) probably_damaging(0.992) TCGA-OL-A5RW-01 14 24738317 24738317 G C RABGGTA Silent p.A228A 0.91 TCGA-OL-A5RW-01 14 38295446 38295446 T C TTC6 Missense_Mutation p.I1674T 0.14 deleterious(0.01) benign(0.171) TCGA-OL-A5RW-01 14 55511499 55511499 A G SOCS4 3'UTR 0.44 TCGA-OL-A5RW-01 14 64894165 64894165 C T MTHFD1 Missense_Mutation p.S413F 0.93 deleterious(0) probably_damaging(1) TCGA-OL-A5RW-01 14 64894167 64894167 C T MTHFD1 Nonsense_Mutation p.Q414* 0.92 TCGA-OL-A5RW-01 14 75558062 75558062 C G NEK9 Missense_Mutation p.D785H 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.564) TCGA-OL-A5RW-01 15 101835323 101835323 C T SNRPA1 Missense_Mutation p.D21N 0.14 deleterious(0) possibly_damaging(0.863) TCGA-OL-A5RW-01 15 102242498 102242498 C T TARSL2 Missense_Mutation p.D389N 0.58 tolerated(0.05) benign(0.001) TCGA-OL-A5RW-01 15 23445449 23445449 G A AC100757.1 3'Flank 0.27 TCGA-OL-A5RW-01 15 28501072 28501072 C T HERC2 Missense_Mutation p.M939I 0.40 possibly_damaging(0.637) TCGA-OL-A5RW-01 15 42059326 42059326 C A MGA Missense_Mutation p.P3016T 0.72 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RW-01 15 59956276 59956276 C G BNIP2 Missense_Mutation p.E434Q 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-OL-A5RW-01 15 64665786 64665786 C G CTD-2116N17.1 Intron 0.38 TCGA-OL-A5RW-01 15 68500535 68500535 G A CLN6 Silent p.V293V 0.12 TCGA-OL-A5RW-01 15 73613971 73613971 C G HCN4 3'UTR 0.08 TCGA-OL-A5RW-01 15 74003702 74003702 C A CD276 Intron 0.46 TCGA-OL-A5RW-01 15 92981772 92981772 G C ST8SIA2 Silent p.V160V 0.15 TCGA-OL-A5RW-01 16 14962408 14962408 T G NOMO1 Missense_Mutation p.F604V 0.34 tolerated(0.09) possibly_damaging(0.629) TCGA-OL-A5RW-01 16 1841132 1841132 G C IGFALS Missense_Mutation p.S467R 0.86 deleterious(0.04) probably_damaging(0.974) TCGA-OL-A5RW-01 16 396354 396354 C G AXIN1 Missense_Mutation p.Q224H 0.34 tolerated(0.09) benign(0.009) TCGA-OL-A5RW-01 16 67765188 67765188 C G RANBP10 Intron 1.00 TCGA-OL-A5RW-01 16 70871623 70871623 G C HYDIN Silent p.V4404V 0.63 TCGA-OL-A5RW-01 17 14095510 14095510 G C COX10 Missense_Mutation p.W300C 0.44 deleterious(0) probably_damaging(0.992) TCGA-OL-A5RW-01 17 1985179 1985179 G C SMG6 Missense_Mutation p.I1202M 0.86 deleterious(0) probably_damaging(0.99) TCGA-OL-A5RW-01 17 21114346 21114346 T C TMEM11 Intron 0.20 TCGA-OL-A5RW-01 17 27225510 27225510 C T DHRS13 Silent p.K361K 0.24 TCGA-OL-A5RW-01 17 39637188 39637188 C A KRT35 Silent p.V54V 0.87 TCGA-OL-A5RW-01 17 40936480 40936480 G T WNK4 Missense_Mutation p.K351N 0.55 deleterious(0) unknown(0) TCGA-OL-A5RW-01 17 43227266 43227269 AGCG - HEXIM1 Frame_Shift_Del p.S237Mfs*45 0.37 TCGA-OL-A5RW-01 17 48598683 48598683 G A MYCBPAP Missense_Mutation p.D390N 0.12 deleterious(0) probably_damaging(0.969) TCGA-OL-A5RW-01 17 60503872 60503872 G C METTL2A Missense_Mutation p.E139Q 0.19 tolerated(0.12) benign(0.035) TCGA-OL-A5RW-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.50 TCGA-OL-A5RW-01 17 79078393 79078393 C G BAIAP2 Missense_Mutation p.I382M 0.35 tolerated(0.06) probably_damaging(0.97) TCGA-OL-A5RW-01 17 79172751 79172751 C T AZI1 Missense_Mutation p.G405S 0.45 tolerated(0.23) benign(0.133) TCGA-OL-A5RW-01 17 80280173 80280173 C G SECTM1 Missense_Mutation p.R204T 0.33 tolerated_low_confidence(0.05) benign(0.139) TCGA-OL-A5RW-01 18 43844855 43844855 A T C18orf25 3'UTR 0.31 TCGA-OL-A5RW-01 19 10369466 10369466 G A MRPL4 Intron 0.43 TCGA-OL-A5RW-01 19 11591455 11591455 G A ELAVL3 5'UTR 0.05 TCGA-OL-A5RW-01 19 12829955 12829955 C G TNPO2 Missense_Mutation p.K71N 0.06 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RW-01 19 23836666 23836666 C A ZNF675 Nonsense_Mutation p.E357* 0.38 TCGA-OL-A5RW-01 19 37488647 37488647 G C ZNF568 3'UTR 0.24 TCGA-OL-A5RW-01 19 37641670 37641670 T C ZNF585A 3'UTR 0.10 TCGA-OL-A5RW-01 19 38955362 38955362 C G RYR1 Missense_Mutation p.T957R 0.38 benign(0.294) TCGA-OL-A5RW-01 19 39390346 39390346 C G SIRT2 5'UTR 0.38 TCGA-OL-A5RW-01 19 416932 416932 G A SHC2 3'UTR 0.16 TCGA-OL-A5RW-01 19 42592927 42592927 G T POU2F2 3'Flank 0.42 TCGA-OL-A5RW-01 19 45017248 45017248 G A CEACAM20 RNA 0.43 TCGA-OL-A5RW-01 19 45656343 45656343 C G NKPD1 Missense_Mutation p.R451T 0.32 deleterious(0) probably_damaging(0.977) TCGA-OL-A5RW-01 19 47261420 47261420 G C FKRP 3'UTR 0.24 TCGA-OL-A5RW-01 19 47507903 47507903 G C ARHGAP35 3'UTR 0.32 TCGA-OL-A5RW-01 19 48246124 48246124 G A EHD2 3'UTR 0.17 TCGA-OL-A5RW-01 19 48800320 48800320 G A CCDC114 Silent p.L642L 0.44 TCGA-OL-A5RW-01 19 49142659 49142659 C T CA11 Missense_Mutation p.G233D 0.18 tolerated(0.18) probably_damaging(0.997) TCGA-OL-A5RW-01 19 49378977 49378977 G T PPP1R15A Missense_Mutation p.R591L 0.52 deleterious(0) probably_damaging(0.982) TCGA-OL-A5RW-01 19 51219970 51219970 G A SHANK1 Silent p.H69H 0.45 TCGA-OL-A5RW-01 19 5144267 5144267 C G KDM4B Silent p.L915L 0.30 TCGA-OL-A5RW-01 19 52376202 52376202 A C ZNF577 Silent p.T347T 0.31 TCGA-OL-A5RW-01 19 53994508 53994508 C T ZNF813 Missense_Mutation p.S341F 0.41 tolerated(0.58) benign(0.258) TCGA-OL-A5RW-01 19 54257356 54257356 A G MIR527 RNA 0.34 TCGA-OL-A5RW-01 19 549750 549750 T G GZMM Missense_Mutation p.Y245D 0.06 deleterious(0) probably_damaging(0.995) TCGA-OL-A5RW-01 19 5587292 5587292 G A SAFB2 Missense_Mutation p.H942Y 0.39 deleterious_low_confidence(0) benign(0.152) TCGA-OL-A5RW-01 19 57883165 57883165 G C ZNF547 Missense_Mutation p.E14Q 0.10 deleterious(0) probably_damaging(0.961) TCGA-OL-A5RW-01 1 108114497 108114497 G A VAV3 3'UTR 0.24 TCGA-OL-A5RW-01 1 109865579 109865579 G A SORT1 Missense_Mutation p.L667F 0.37 tolerated(0.39) benign(0.318) TCGA-OL-A5RW-01 1 120468413 120468413 G A NOTCH2 Silent p.C1342C 0.04 TCGA-OL-A5RW-01 1 151747603 151747603 C T TDRKH Missense_Mutation p.A492T 0.26 deleterious(0) probably_damaging(1) TCGA-OL-A5RW-01 1 155785925 155785925 T A GON4L Intron 0.14 TCGA-OL-A5RW-01 1 169677698 169677698 G C SELL Missense_Mutation p.A124G 0.66 deleterious(0) probably_damaging(0.998) TCGA-OL-A5RW-01 1 202137637 202137637 G C PTPRVP Intron 0.47 TCGA-OL-A5RW-01 1 205497037 205497037 C T CDK18 Missense_Mutation p.A312V 0.43 deleterious(0) probably_damaging(0.957) TCGA-OL-A5RW-01 1 205499330 205499330 C G CDK18 Intron 0.06 TCGA-OL-A5RW-01 1 21880613 21880613 C A ALPL Nonsense_Mutation p.C13* 0.08 TCGA-OL-A5RW-01 1 220152942 220152942 G C EPRS Missense_Mutation p.H1243D 0.35 deleterious(0.02) possibly_damaging(0.521) TCGA-OL-A5RW-01 1 222794527 222794527 G C MIA3 Missense_Mutation p.E54Q 0.11 tolerated(0.36) benign(0.219) TCGA-OL-A5RW-01 1 224197237 224197237 A T RP11-504P24.4 RNA 0.40 TCGA-OL-A5RW-01 1 226074205 226074205 G A LEFTY1 3'UTR 0.30 TCGA-OL-A5RW-01 1 227181766 227181766 G T CDC42BPA 3'UTR 0.33 TCGA-OL-A5RW-01 1 228462358 228462358 C T OBSCN Silent p.S2298S 0.41 TCGA-OL-A5RW-01 1 232941703 232941703 G A MAP10 Missense_Mutation p.E312K 0.35 tolerated(0.07) benign(0.016) TCGA-OL-A5RW-01 1 237949315 237949315 A T RYR2 Missense_Mutation p.K4436I 0.31 benign(0.438) TCGA-OL-A5RW-01 1 32682169 32682169 G A TMEM234 3'UTR 0.13 TCGA-OL-A5RW-01 1 34128546 34128546 A G CSMD2 Missense_Mutation p.L1360P 0.39 deleterious(0) probably_damaging(0.956) TCGA-OL-A5RW-01 1 43315145 43315145 G A ZNF691 5'UTR 0.10 TCGA-OL-A5RW-01 1 44456628 44456628 G A B4GALT2 3'Flank 0.40 TCGA-OL-A5RW-01 1 48694911 48694911 G A SLC5A9 Intron 0.09 TCGA-OL-A5RW-01 1 70727400 70727400 G A ANKRD13C 3'UTR 0.74 TCGA-OL-A5RW-01 1 97280362 97280362 G C PTBP2 3'Flank 0.06 TCGA-OL-A5RW-01 1 978694 978694 C T AGRN Missense_Mutation p.A487V 0.46 tolerated(1) possibly_damaging(0.499) TCGA-OL-A5RW-01 20 32232881 32232881 C A CBFA2T2 3'UTR 0.49 TCGA-OL-A5RW-01 20 44594384 44594384 C T ZNF335 Missense_Mutation p.E329K 0.12 deleterious(0.01) possibly_damaging(0.857) TCGA-OL-A5RW-01 20 51870687 51870687 G A TSHZ2 Silent p.L230L 0.31 TCGA-OL-A5RW-01 20 58564030 58564030 C G CDH26 Missense_Mutation p.F365L 0.28 tolerated(0.66) benign(0.002) TCGA-OL-A5RW-01 21 30332984 30332984 G C LTN1 Silent p.L782L 0.12 TCGA-OL-A5RW-01 21 35743068 35743068 G C KCNE2 Missense_Mutation p.K97N 0.06 deleterious(0) possibly_damaging(0.641) TCGA-OL-A5RW-01 21 36193978 36193978 G C RUNX1 Intron 0.05 TCGA-OL-A5RW-01 21 47250185 47250185 G A PCBP3 Intron 0.56 TCGA-OL-A5RW-01 22 18301523 18301523 T G MICAL3 Missense_Mutation p.S1302R 0.18 benign(0) TCGA-OL-A5RW-01 22 20128842 20128842 C G ZDHHC8 Missense_Mutation p.P333A 0.79 tolerated(0.54) benign(0.014) TCGA-OL-A5RW-01 22 21134011 21134011 C G SERPIND1 Silent p.L137L 0.20 TCGA-OL-A5RW-01 22 24649081 24649081 C G POM121L9P RNA 0.17 TCGA-OL-A5RW-01 22 24916373 24916384 CGAGGCCAGAAA - UPB1 In_Frame_Del p.E271_N274del 0.79 TCGA-OL-A5RW-01 22 40364072 40364072 G C GRAP2 Silent p.R162R 0.30 TCGA-OL-A5RW-01 2 100623429 100623429 G C AFF3 Missense_Mutation p.Q205E 0.15 tolerated(0.11) probably_damaging(0.986) TCGA-OL-A5RW-01 2 10192756 10192756 C G KLF11 3'UTR 0.63 TCGA-OL-A5RW-01 2 102490547 102490547 G C MAP4K4 Missense_Mutation p.G880A 0.36 tolerated_low_confidence(0.35) possibly_damaging(0.463) TCGA-OL-A5RW-01 2 103274219 103274219 C G SLC9A2 Missense_Mutation p.F162L 0.08 deleterious(0) probably_damaging(0.996) TCGA-OL-A5RW-01 2 187366134 187366134 G C ZC3H15 Missense_Mutation p.D142H 0.31 deleterious(0) probably_damaging(0.996) TCGA-OL-A5RW-01 2 189873946 189873946 T A COL3A1 Missense_Mutation p.S1274R 0.35 unknown(0) TCGA-OL-A5RW-01 2 190585369 190585369 C G ANKAR Missense_Mutation p.L831V 0.11 deleterious(0) probably_damaging(0.998) TCGA-OL-A5RW-01 2 203589688 203589688 C G FAM117B Missense_Mutation p.H268D 0.12 deleterious(0) probably_damaging(0.993) TCGA-OL-A5RW-01 2 203747488 203747488 A T WDR12 Nonsense_Mutation p.Y380* 0.45 TCGA-OL-A5RW-01 2 207509197 207509197 G T AC010731.4 RNA 0.08 TCGA-OL-A5RW-01 2 210642071 210642071 G C UNC80 Missense_Mutation p.E130Q 0.04 benign(0.093) TCGA-OL-A5RW-01 2 210884481 210884481 C G RPE Nonsense_Mutation p.S218* 0.07 TCGA-OL-A5RW-01 2 215278990 215278990 A G VWC2L Missense_Mutation p.S25G 0.39 tolerated(0.34) benign(0.025) TCGA-OL-A5RW-01 2 219826526 219826526 C A CDK5R2 3'UTR 0.38 TCGA-OL-A5RW-01 2 223919839 223919839 G C KCNE4 3'UTR 0.44 TCGA-OL-A5RW-01 2 27249770 27249770 G A MAPRE3 3'UTR 0.31 TCGA-OL-A5RW-01 2 27730607 27730607 G T GCKR Silent p.T401T 0.07 TCGA-OL-A5RW-01 2 45169152 45169152 T A SIX3 5'UTR 0.06 TCGA-OL-A5RW-01 2 46413375 46413375 G T PRKCE 3'UTR 0.31 TCGA-OL-A5RW-01 2 46613589 46613589 G A EPAS1 3'UTR 0.29 TCGA-OL-A5RW-01 2 55199392 55199392 C T RTN4 3'UTR 0.33 TCGA-OL-A5RW-01 2 69701754 69701754 G A AAK1 3'UTR 0.50 TCGA-OL-A5RW-01 2 74689734 74689734 G C MOGS Silent p.A394A 0.07 TCGA-OL-A5RW-01 2 85818859 85818859 G T VAMP5 Missense_Mutation p.E5D 0.40 tolerated(0.3) benign(0.034) TCGA-OL-A5RW-01 2 86067514 86067514 T C ST3GAL5 Missense_Mutation p.N337S 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-OL-A5RW-01 2 9520932 9520932 G A ASAP2 Missense_Mutation p.E671K 0.42 deleterious(0) possibly_damaging(0.844) TCGA-OL-A5RW-01 2 99274686 99274686 C T MGAT4A Silent p.E193E 0.26 TCGA-OL-A5RW-01 3 105421267 105421267 G C CBLB Missense_Mutation p.L544V 0.31 deleterious_low_confidence(0.01) benign(0.011) TCGA-OL-A5RW-01 3 113374644 113374644 T G KIAA2018 Missense_Mutation p.D1962A 0.34 benign(0.371) TCGA-OL-A5RW-01 3 119306705 119306705 G C ADPRH Missense_Mutation p.D352H 0.25 deleterious(0.03) benign(0.384) TCGA-OL-A5RW-01 3 121415907 121415907 G A GOLGB1 Missense_Mutation p.P1155S 0.27 benign(0.287) TCGA-OL-A5RW-01 3 122514150 122514150 G A DIRC2 Silent p.L37L 0.11 TCGA-OL-A5RW-01 3 12641238 12641238 G A RAF1 Missense_Mutation p.R354W 0.89 deleterious(0) probably_damaging(0.986) TCGA-OL-A5RW-01 3 126753656 126753656 G A PLXNA1 3'UTR 0.44 TCGA-OL-A5RW-01 3 130290047 130290047 C G COL6A6 Silent p.L929L 0.50 TCGA-OL-A5RW-01 3 134670251 134670251 C G EPHB1 Silent p.T54T 0.31 TCGA-OL-A5RW-01 3 150176290 150176290 C G TSC22D2 Nonsense_Mutation p.S737* 0.12 TCGA-OL-A5RW-01 3 151545910 151545910 A T AADAC Missense_Mutation p.S384C 0.36 deleterious(0.01) benign(0.008) TCGA-OL-A5RW-01 3 16635178 16635178 C T DAZL Missense_Mutation p.G260E 0.76 tolerated(0.06) benign(0.341) TCGA-OL-A5RW-01 3 179051646 179051646 C G ZNF639 Missense_Mutation p.F298L 0.13 deleterious(0.03) probably_damaging(0.989) TCGA-OL-A5RW-01 3 195517804 195517804 T C MUC4 Missense_Mutation p.H216R 0.25 unknown(0) TCGA-OL-A5RW-01 3 195778239 195778239 C G TFRC 3'UTR 0.15 TCGA-OL-A5RW-01 3 196812529 196812529 T - DLG1 Frame_Shift_Del p.D620Vfs*21 0.15 TCGA-OL-A5RW-01 3 38039609 38039609 G T VILL Missense_Mutation p.V265F 0.88 deleterious(0.01) benign(0.053) TCGA-OL-A5RW-01 3 41268809 41268809 C T CTNNB1 Silent p.V349V 0.66 TCGA-OL-A5RW-01 3 46982546 46982546 C G CCDC12 Missense_Mutation p.D49H 0.84 deleterious(0.01) possibly_damaging(0.672) TCGA-OL-A5RW-01 3 52418012 52418012 G A DNAH1 Missense_Mutation p.E2763K 0.13 benign(0.039) TCGA-OL-A5RW-01 3 9948736 9948736 C G IL17RE Missense_Mutation p.H206Q 0.72 deleterious(0) probably_damaging(0.934) TCGA-OL-A5RW-01 4 147788723 147788723 T A TTC29 Missense_Mutation p.K271M 0.70 deleterious(0.01) benign(0.103) TCGA-OL-A5RW-01 4 155156012 155156012 C T DCHS2 Missense_Mutation p.M2809I 0.44 tolerated(0.78) benign(0.002) TCGA-OL-A5RW-01 4 2930167 2930167 C T ADD1 Missense_Mutation p.P742S 0.14 deleterious_low_confidence(0) unknown(0) TCGA-OL-A5RW-01 4 41746430 41746430 A G PHOX2B 3'UTR 0.84 TCGA-OL-A5RW-01 4 77234238 77234238 A G CCDC158 3'UTR 0.78 TCGA-OL-A5RW-01 4 8417577 8417577 C G ACOX3 Missense_Mutation p.K98N 0.19 tolerated(0.35) benign(0.004) TCGA-OL-A5RW-01 5 11018148 11018148 C A CTNND2 Missense_Mutation p.A1008S 0.86 deleterious(0.02) possibly_damaging(0.825) TCGA-OL-A5RW-01 5 115780865 115780865 G A SEMA6A 3'UTR 0.12 TCGA-OL-A5RW-01 5 133295520 133295520 G C C5orf15 Missense_Mutation p.L111V 0.52 tolerated(0.69) benign(0.039) TCGA-OL-A5RW-01 5 139495358 139495358 G A PURA 3'UTR 0.25 TCGA-OL-A5RW-01 5 139680102 139680102 C T PFDN1 Silent p.Q33Q 0.31 TCGA-OL-A5RW-01 5 139722294 139722294 A G HBEGF Silent p.C108C 0.30 TCGA-OL-A5RW-01 5 140071274 140071274 C T HARS2 Missense_Mutation p.S14L 0.08 deleterious(0.04) benign(0.001) TCGA-OL-A5RW-01 5 140552633 140552633 C T PCDHB7 Nonsense_Mutation p.Q73* 0.17 TCGA-OL-A5RW-01 5 140735578 140735578 G A PCDHGA4 Missense_Mutation p.E271K 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OL-A5RW-01 5 140754608 140754608 G A PCDHGA6 Missense_Mutation p.E320K 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.61) TCGA-OL-A5RW-01 5 150945353 150945353 G A FAT2 Missense_Mutation p.S1047L 0.38 benign(0.002) TCGA-OL-A5RW-01 5 171510087 171510087 G A STK10 Missense_Mutation p.R563C 0.55 deleterious(0) possibly_damaging(0.704) TCGA-OL-A5RW-01 6 100016664 100016664 A T CCNC 5'UTR 0.50 TCGA-OL-A5RW-01 6 105526342 105526342 C T LIN28B Missense_Mutation p.P146L 0.41 deleterious(0.02) probably_damaging(0.994) TCGA-OL-A5RW-01 6 105529936 105529936 G C LIN28B 3'UTR 0.46 TCGA-OL-A5RW-01 6 26158626 26158626 G C HIST1H2BD Missense_Mutation p.E77Q 0.69 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-OL-A5RW-01 6 26216532 26216532 C T HIST1H2BG Missense_Mutation p.E114K 0.30 tolerated_low_confidence(0.07) benign(0.041) TCGA-OL-A5RW-01 6 28359190 28359190 G C ZSCAN12 Missense_Mutation p.Q293E 0.32 deleterious(0.03) benign(0.227) TCGA-OL-A5RW-01 6 30037086 30037086 C G PPP1R11 3'UTR 0.07 TCGA-OL-A5RW-01 6 30557749 30557749 C G ABCF1 Missense_Mutation p.S744C 0.51 deleterious(0) probably_damaging(1) TCGA-OL-A5RW-01 6 33762550 33762550 C G MLN 3'UTR 0.32 TCGA-OL-A5RW-01 6 39286819 39286819 C A KCNK16 Missense_Mutation p.A102S 0.49 tolerated(0.34) probably_damaging(0.985) TCGA-OL-A5RW-01 6 41712157 41712157 G C PGC Silent p.V102V 0.07 TCGA-OL-A5RW-01 6 49518848 49518848 G A C6orf141 Missense_Mutation p.D115N 0.07 deleterious(0.04) probably_damaging(0.964) TCGA-OL-A5RW-01 6 73919471 73919471 C T RP11-257K9.8 3'UTR 0.39 TCGA-OL-A5RW-01 6 84371309 84371309 T C SNAP91 Missense_Mutation p.T122A 0.34 deleterious(0.02) unknown(0) TCGA-OL-A5RW-01 7 102952500 102952500 C G PMPCB Intron 0.12 TCGA-OL-A5RW-01 7 111584876 111584876 A C DOCK4 Missense_Mutation p.I278M 0.18 deleterious(0) possibly_damaging(0.714) TCGA-OL-A5RW-01 7 112535742 112535742 C G C7orf60 Missense_Mutation p.D119H 0.13 tolerated(0.06) probably_damaging(0.936) TCGA-OL-A5RW-01 7 120906415 120906415 G C CPED1 Missense_Mutation p.L815F 0.57 tolerated(0.51) benign(0.011) TCGA-OL-A5RW-01 7 128119424 128119424 G C METTL2B Missense_Mutation p.E139Q 0.12 tolerated(0.13) benign(0.043) TCGA-OL-A5RW-01 7 134853688 134853688 C G C7orf49 5'UTR 0.73 TCGA-OL-A5RW-01 7 21934280 21934280 G A DNAH11 Missense_Mutation p.E4271K 0.42 probably_damaging(0.997) TCGA-OL-A5RW-01 7 23309658 23309658 T C GPNMB Silent p.P443P 0.32 TCGA-OL-A5RW-01 7 26233203 26233203 T C HNRNPA2B1 Missense_Mutation p.Y290C 0.42 tolerated(0.17) benign(0.18) TCGA-OL-A5RW-01 7 38948751 38948751 T A VPS41 Intron 0.43 TCGA-OL-A5RW-01 7 44047247 44047247 G A SPDYE1 Intron 0.23 TCGA-OL-A5RW-01 7 70255866 70255866 C G AUTS2 Missense_Mutation p.P1222A 0.47 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RW-01 7 77423617 77423617 A C TMEM60 Missense_Mutation p.L25W 0.12 deleterious(0) probably_damaging(0.996) TCGA-OL-A5RW-01 7 90044688 90044688 G C CLDN12 3'UTR 0.18 TCGA-OL-A5RW-01 7 94935650 94935650 G A PON1 Missense_Mutation p.H243Y 0.60 deleterious(0.01) probably_damaging(0.989) TCGA-OL-A5RW-01 7 99091434 99091434 G C ZNF394 Silent p.P468P 0.71 TCGA-OL-A5RW-01 8 103667808 103667808 G C KLF10 Missense_Mutation p.L8V 0.11 tolerated_low_confidence(0.07) benign(0.045) TCGA-OL-A5RW-01 8 110394764 110394764 C A PKHD1L1 Nonsense_Mutation p.C127* 0.24 TCGA-OL-A5RW-01 8 133855028 133855028 G C PHF20L1 Missense_Mutation p.D886H 0.17 deleterious(0.01) possibly_damaging(0.592) TCGA-OL-A5RW-01 8 142458072 142458072 C G SNORD5 3'Flank 0.07 TCGA-OL-A5RW-01 8 142480722 142480722 T A MROH5 3'UTR 0.73 TCGA-OL-A5RW-01 8 144657806 144657806 C A NAPRT1 Missense_Mutation p.G392C 0.35 deleterious(0) probably_damaging(1) TCGA-OL-A5RW-01 8 25161941 25161941 G C DOCK5 Intron 0.90 TCGA-OL-A5RW-01 8 54852174 54852174 G C RGS20 Missense_Mutation p.Q183H 0.20 deleterious(0) probably_damaging(0.928) TCGA-OL-A5RW-01 8 71486240 71486240 T A AC120194.1 5'UTR 0.47 TCGA-OL-A5RW-01 9 116136803 116136803 C G HDHD3 5'UTR 0.76 TCGA-OL-A5RW-01 9 117027232 117027232 G A COL27A1 Missense_Mutation p.G1093D 0.12 probably_damaging(0.982) TCGA-OL-A5RW-01 9 16416474 16416474 A G BNC2 3'UTR 0.28 TCGA-OL-A5RW-01 9 19376334 19376334 G C RPS6 Missense_Mutation p.S236C 0.22 deleterious(0.03) benign(0.184) TCGA-OL-A5RW-01 9 21865747 21865747 G C MTAP 3'UTR 0.06 TCGA-OL-A5RW-01 9 27524613 27524613 G A IFNK Silent p.Q93Q 0.17 TCGA-OL-A5RW-01 9 32630536 32630536 G A TAF1L Missense_Mutation p.A1681V 0.07 tolerated_low_confidence(0.07) benign(0.004) TCGA-OL-A5RW-01 9 33917242 33917242 C - UBE2R2 3'UTR 0.17 TCGA-OL-A5RW-01 9 3824142 3824142 C A GLIS3 3'Flank 0.38 TCGA-OL-A5RW-01 9 5769333 5769333 G C KIAA1432 Intron 0.35 TCGA-OL-A5RW-01 9 70918813 70918813 C G FOXD4L3 Missense_Mutation p.R316G 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.726) TCGA-OL-A5RW-01 9 712726 712726 G A KANK1 Missense_Mutation p.A654T 0.10 tolerated(0.62) benign(0.002) TCGA-OL-A5RW-01 X 106840627 106840627 G T FRMPD3 Silent p.V539V 0.10 TCGA-OL-A5RW-01 X 107977371 107977371 G T IRS4 Missense_Mutation p.S735Y 0.10 deleterious(0) unknown(0) TCGA-OL-A5RW-01 X 127185327 127185327 C G ACTRT1 Missense_Mutation p.D287H 0.40 deleterious(0.02) probably_damaging(0.988) TCGA-OL-A5RW-01 X 128902470 128902470 G A XPNPEP2 3'UTR 0.52 TCGA-OL-A5RW-01 X 1464290 1464290 A G IL3RA Missense_Mutation p.D49G 0.04 tolerated(0.44) benign(0) TCGA-OL-A5RW-01 X 153043682 153043682 C A PLXNB3 Intron 0.60 TCGA-OL-A5RW-01 X 153134351 153134351 T G L1CAM Missense_Mutation p.S442R 0.42 tolerated(0.06) benign(0.031) TCGA-OL-A5RW-01 X 47104842 47104842 T C USP11 Missense_Mutation p.L787P 0.48 deleterious(0) probably_damaging(0.998) TCGA-OL-A5RW-01 X 48825988 48825988 A T KCND1 Missense_Mutation p.F231I 0.49 deleterious(0) probably_damaging(0.991) TCGA-OL-A5RW-01 X 70355014 70355014 C T MED12 Nonsense_Mutation p.R1646* 0.43 TCGA-OL-A5RX-01 10 8111550 8111550 A T GATA3 Nonsense_Mutation p.K347* 0.17 TCGA-OL-A5RX-01 11 64419603 64419603 C T NRXN2 Missense_Mutation p.A814T 0.24 deleterious(0.04) benign(0.005) TCGA-OL-A5RX-01 11 96126395 96126395 A G JRKL 3'UTR 0.18 TCGA-OL-A5RX-01 14 71206700 71206700 A - MAP3K9 Intron 0.20 TCGA-OL-A5RX-01 14 81609335 81609335 G C TSHR Missense_Mutation p.Q311H 0.35 tolerated(0.22) benign(0.005) TCGA-OL-A5RX-01 15 78214060 78214060 C A RP11-114H24.7 Intron 0.15 TCGA-OL-A5RX-01 16 2745959 2745959 C T KCTD5 Silent p.I92I 0.46 TCGA-OL-A5RX-01 16 85690189 85690189 C T GSE1 Silent p.P410P 0.33 TCGA-OL-A5RX-01 17 11603102 11603102 C A DNAH9 Missense_Mutation p.L1643I 0.15 benign(0.093) TCGA-OL-A5RX-01 17 15968898 15968898 T - NCOR1 Frame_Shift_Del p.I1618Lfs*8 0.12 TCGA-OL-A5RX-01 18 55153329 55153329 G A ONECUT2 3'UTR 0.17 TCGA-OL-A5RX-01 19 54823200 54823200 G A LILRA5 Missense_Mutation p.R115C 0.31 tolerated(0.08) possibly_damaging(0.495) TCGA-OL-A5RX-01 1 161954651 161954651 T C OLFML2B Missense_Mutation p.N532D 0.17 deleterious(0.04) benign(0.259) TCGA-OL-A5RX-01 1 167511446 167511446 C T CREG1 3'UTR 0.10 TCGA-OL-A5RX-01 1 169391101 169391101 A G CCDC181 Missense_Mutation p.C190R 0.13 tolerated(0.4) benign(0.006) TCGA-OL-A5RX-01 1 181767845 181767845 C T CACNA1E Missense_Mutation p.R2273W 0.17 deleterious(0) probably_damaging(0.919) TCGA-OL-A5RX-01 1 186276742 186276742 A G PRG4 Missense_Mutation p.K631E 0.22 unknown(0) TCGA-OL-A5RX-01 1 215793916 215793916 C T KCTD3 Missense_Mutation p.R802W 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OL-A5RX-01 20 52835691 52835691 C T PFDN4 3'UTR 0.14 TCGA-OL-A5RX-01 20 62124544 62124544 G A EEF1A2 Missense_Mutation p.R240C 0.23 tolerated_low_confidence(0.08) benign(0.379) TCGA-OL-A5RX-01 22 20133659 20133659 C T ZDHHC8 Intron 0.13 TCGA-OL-A5RX-01 2 228211954 228211954 G A MFF Silent p.S202S 0.19 TCGA-OL-A5RX-01 2 87085532 87085532 A G CD8B Silent p.H17H 0.20 TCGA-OL-A5RX-01 3 178922328 178922328 C G PIK3CA Missense_Mutation p.P366R 0.20 tolerated(0.65) benign(0.305) TCGA-OL-A5RX-01 3 178948044 178948044 A G PIK3CA Missense_Mutation p.D939G 0.17 tolerated(0.83) benign(0.027) TCGA-OL-A5RX-01 4 128754154 128754154 T A HSPA4L 3'UTR 0.17 TCGA-OL-A5RX-01 4 13617077 13617077 C A BOD1L1 Missense_Mutation p.D140Y 0.22 probably_damaging(1) TCGA-OL-A5RX-01 5 139908991 139908991 C T ANKHD1 Nonsense_Mutation p.Q2154* 0.20 TCGA-OL-A5RX-01 6 108533037 108533037 C A SNX3 3'UTR 0.25 TCGA-OL-A5RX-01 6 144843127 144843127 T G UTRN Missense_Mutation p.I1851M 0.25 tolerated(0.11) benign(0.057) TCGA-OL-A5RX-01 7 151896463 151896463 G A KMT2C Nonsense_Mutation p.Q1392* 0.33 TCGA-OL-A5RX-01 7 65440012 65440012 T C GUSB Missense_Mutation p.Y320C 0.14 deleterious(0) probably_damaging(1) TCGA-OL-A5RX-01 7 92848661 92848661 T A HEPACAM2 Silent p.A61A 0.17 TCGA-OL-A5RX-01 8 3008925 3008925 C T CSMD1 Missense_Mutation p.G2009S 0.20 probably_damaging(1) TCGA-OL-A5RX-01 9 111625797 111625797 G A ACTL7A Missense_Mutation p.V399M 0.16 deleterious(0.01) probably_damaging(1) TCGA-OL-A5RX-01 9 139977163 139977163 G A UAP1L1 Silent p.P502P 0.25 TCGA-OL-A5RX-01 X 65241995 65241995 G A VSIG4 3'UTR 0.15 TCGA-OL-A5RY-01 11 119171316 119171316 G A CBL 3'UTR 0.06 TCGA-OL-A5RY-01 14 69259785 69259785 G A ZFP36L1 5'UTR 0.13 TCGA-OL-A5RY-01 18 65180960 65180960 G A DSEL Missense_Mutation p.R306C 0.10 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RY-01 1 110655101 110655101 C G UBL4B 5'UTR 0.17 TCGA-OL-A5RY-01 1 152083754 152083754 G C TCHH Missense_Mutation p.L647V 0.11 unknown(0) TCGA-OL-A5RY-01 21 32624173 32624173 G A TIAM1 Silent p.G432G 0.10 TCGA-OL-A5RY-01 2 39476709 39476709 A - MAP4K3 3'UTR 0.12 TCGA-OL-A5RY-01 3 192517061 192517061 G A MB21D2 Missense_Mutation p.S197L 0.13 tolerated(0.26) benign(0.004) TCGA-OL-A5RY-01 5 41731834 41731834 A C OXCT1 Missense_Mutation p.N520K 0.13 tolerated_low_confidence(0.06) benign(0.006) TCGA-OL-A5RY-01 6 116600681 116600681 C T TSPYL1 Missense_Mutation p.A105T 0.13 tolerated(1) benign(0) TCGA-OL-A5RY-01 7 128595124 128595124 G A TNPO3 3'Flank 0.05 TCGA-OL-A5RY-01 7 99526846 99526846 A G GJC3 Missense_Mutation p.L133P 0.08 deleterious(0) probably_damaging(0.943) TCGA-OL-A5RY-01 9 102626713 102626713 G C NR4A3 3'UTR 0.13 TCGA-OL-A5RY-01 X 103080633 103080633 C T RAB9B Missense_Mutation p.V28I 0.09 tolerated(0.09) possibly_damaging(0.815) TCGA-OL-A5RZ-01 10 102783752 102783752 G A PDZD7 Silent p.S100S 0.23 TCGA-OL-A5RZ-01 10 105932288 105932288 C T WDR96 Silent p.L822L 0.18 TCGA-OL-A5RZ-01 10 134261353 134261353 A G C10orf91 Missense_Mutation p.T76A 0.25 tolerated_low_confidence(0.2) benign(0.388) TCGA-OL-A5RZ-01 10 134733643 134733643 C T TTC40 Silent p.A550A 0.20 TCGA-OL-A5RZ-01 10 17113485 17113485 G C CUBN Silent p.L855L 0.05 TCGA-OL-A5RZ-01 10 64575931 64575932 - A EGR2 5'UTR 0.38 TCGA-OL-A5RZ-01 11 32956872 32956872 T A QSER1 Silent p.S1227S 0.27 TCGA-OL-A5RZ-01 11 57467477 57467477 G T ZDHHC5 Missense_Mutation p.G708C 0.22 deleterious(0) probably_damaging(0.996) TCGA-OL-A5RZ-01 11 64109828 64109839 TAAGAAGGCTCC - CCDC88B In_Frame_Del p.I295_R299delinsS 0.28 TCGA-OL-A5RZ-01 11 64502632 64502632 C T RASGRP2 Missense_Mutation p.R455H 0.15 deleterious(0.02) probably_damaging(0.917) TCGA-OL-A5RZ-01 12 102025359 102025359 C T MYBPC1 Silent p.I75I 0.08 TCGA-OL-A5RZ-01 12 102792899 102792899 G A IGF1 3'UTR 0.06 TCGA-OL-A5RZ-01 12 11214195 11214195 G A TAS2R46 Silent p.S233S 0.05 TCGA-OL-A5RZ-01 12 11214196 11214196 G A TAS2R46 Missense_Mutation p.S233F 0.05 deleterious(0) probably_damaging(0.914) TCGA-OL-A5RZ-01 12 117669907 117669907 G A NOS1 Missense_Mutation p.R1123C 0.30 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 12 119772849 119772849 G T CCDC60 5'UTR 0.27 TCGA-OL-A5RZ-01 12 122757077 122757077 T C CLIP1 3'Flank 0.20 TCGA-OL-A5RZ-01 12 133360840 133360840 C T GOLGA3 Silent p.T1059T 0.33 TCGA-OL-A5RZ-01 12 2613659 2613659 T A CACNA1C Intron 0.03 TCGA-OL-A5RZ-01 12 26781008 26781008 C T ITPR2 Missense_Mutation p.E1008K 0.05 tolerated(0.21) benign(0.017) TCGA-OL-A5RZ-01 12 39155972 39155972 G T CPNE8 Missense_Mutation p.P208T 0.18 deleterious(0) possibly_damaging(0.744) TCGA-OL-A5RZ-01 12 41961642 41961642 G A PDZRN4 Missense_Mutation p.E509K 0.15 tolerated(0.07) benign(0.114) TCGA-OL-A5RZ-01 12 49093563 49093563 C T CCNT1 Missense_Mutation p.R165Q 0.15 deleterious(0.04) benign(0.002) TCGA-OL-A5RZ-01 12 52841192 52841192 C T KRT6B Missense_Mutation p.V493I 0.18 tolerated(0.19) unknown(0) TCGA-OL-A5RZ-01 12 53662550 53662550 C T ESPL1 5'UTR 0.32 TCGA-OL-A5RZ-01 12 6134806 6134806 C T VWF Silent p.T1054T 0.14 TCGA-OL-A5RZ-01 14 20248587 20248587 T C OR4M1 Silent p.L36L 0.12 TCGA-OL-A5RZ-01 14 61179178 61179178 C - SIX4 3'UTR 0.21 TCGA-OL-A5RZ-01 14 69806254 69806254 C T GALNT16 Missense_Mutation p.R369C 0.32 deleterious(0) probably_damaging(0.999) TCGA-OL-A5RZ-01 15 100942806 100942806 C T CERS3 3'UTR 0.39 TCGA-OL-A5RZ-01 15 34021156 34021156 C G RYR3 Missense_Mutation p.Q2378E 0.26 probably_damaging(0.995) TCGA-OL-A5RZ-01 15 34021165 34021165 C A RYR3 Missense_Mutation p.L2381M 0.27 probably_damaging(0.99) TCGA-OL-A5RZ-01 15 58855765 58855765 G A LIPC Missense_Mutation p.G411S 0.35 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 15 72057488 72057488 T A THSD4 Missense_Mutation p.C907S 0.11 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 15 78401589 78401589 A T CIB2 Missense_Mutation p.F112I 0.31 deleterious(0) benign(0.36) TCGA-OL-A5RZ-01 16 22926804 22926804 T A HS3ST2 Missense_Mutation p.I342K 0.30 deleterious(0) possibly_damaging(0.643) TCGA-OL-A5RZ-01 16 22926805 22926805 A T HS3ST2 Silent p.I342I 0.30 TCGA-OL-A5RZ-01 16 46843576 46843576 A C C16orf87 Missense_Mutation p.H95Q 0.16 tolerated(0.41) possibly_damaging(0.589) TCGA-OL-A5RZ-01 16 46843631 46843631 A T C16orf87 Missense_Mutation p.V77E 0.12 tolerated(0.27) possibly_damaging(0.804) TCGA-OL-A5RZ-01 16 50745994 50745994 A C NOD2 Silent p.P724P 0.22 TCGA-OL-A5RZ-01 16 58742155 58742155 C G GOT2 Missense_Mutation p.D405H 0.25 deleterious(0) probably_damaging(0.972) TCGA-OL-A5RZ-01 17 15441340 15441340 G A TVP23C Intron 0.41 TCGA-OL-A5RZ-01 17 16706676 16706676 C G CCDC144A 3'UTR 0.25 TCGA-OL-A5RZ-01 17 2202914 2202914 G A SMG6 Missense_Mutation p.P378L 0.42 tolerated_low_confidence(0.25) benign(0.001) TCGA-OL-A5RZ-01 17 2202915 2202915 G T SMG6 Missense_Mutation p.P378T 0.42 tolerated_low_confidence(0.24) benign(0.001) TCGA-OL-A5RZ-01 17 2203052 2203052 G A SMG6 Missense_Mutation p.S332F 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.616) TCGA-OL-A5RZ-01 17 2203543 2203543 G A SMG6 Silent p.V168V 0.54 TCGA-OL-A5RZ-01 17 37792724 37792724 G A PPP1R1B 3'UTR 0.19 TCGA-OL-A5RZ-01 17 37792731 37792731 G A PPP1R1B 3'UTR 0.19 TCGA-OL-A5RZ-01 17 40838951 40838951 C T CNTNAP1 Missense_Mutation p.R311W 0.35 deleterious(0) benign(0.013) TCGA-OL-A5RZ-01 17 43514454 43514454 C T PLEKHM1 3'UTR 0.18 TCGA-OL-A5RZ-01 17 48653606 48653606 G T CACNA1G Missense_Mutation p.G615W 0.48 deleterious(0.04) possibly_damaging(0.541) TCGA-OL-A5RZ-01 17 56388327 56388327 C A BZRAP1 Missense_Mutation p.G1110V 0.09 deleterious(0.04) benign(0.342) TCGA-OL-A5RZ-01 17 58258807 58258807 G C USP32 Missense_Mutation p.H1476D 0.15 tolerated_low_confidence(0.51) benign(0.042) TCGA-OL-A5RZ-01 17 79495875 79495875 G A FSCN2 Silent p.P106P 0.64 TCGA-OL-A5RZ-01 18 21736512 21736512 A C CABYR Intron 0.31 TCGA-OL-A5RZ-01 18 28648096 28648096 G A DSC2 Missense_Mutation p.S864L 0.12 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 18 3094299 3094299 G C MYOM1 Missense_Mutation p.P1245A 0.22 deleterious(0.02) benign(0.05) TCGA-OL-A5RZ-01 18 31250678 31250678 G T ASXL3 Missense_Mutation p.M173I 0.29 benign(0.22) TCGA-OL-A5RZ-01 18 39593429 39593429 A G PIK3C3 Silent p.Q398Q 0.12 TCGA-OL-A5RZ-01 18 7036046 7036046 G A LAMA1 Silent p.Y593Y 0.15 TCGA-OL-A5RZ-01 19 10692038 10692038 C A AP1M2 Nonsense_Mutation p.E193* 0.17 TCGA-OL-A5RZ-01 19 12779224 12779224 G A WDR83OS Silent p.A90A 0.17 TCGA-OL-A5RZ-01 19 13216335 13216335 C A TRMT1 Missense_Mutation p.A557S 0.49 tolerated(0.12) benign(0.04) TCGA-OL-A5RZ-01 19 15227044 15227044 G C ILVBL Missense_Mutation p.L464V 0.19 deleterious(0.01) possibly_damaging(0.515) TCGA-OL-A5RZ-01 19 16980796 16980796 C T SIN3B Missense_Mutation p.R810W 0.24 deleterious(0.01) probably_damaging(0.929) TCGA-OL-A5RZ-01 19 2252377 2252377 T A JSRP1 Missense_Mutation p.Q316L 0.09 tolerated(0.07) benign(0.019) TCGA-OL-A5RZ-01 19 2252412 2252412 C A JSRP1 Missense_Mutation p.Q304H 0.10 tolerated(0.09) probably_damaging(0.976) TCGA-OL-A5RZ-01 19 31769718 31769718 C G TSHZ3 Missense_Mutation p.E327D 0.11 tolerated(1) possibly_damaging(0.48) TCGA-OL-A5RZ-01 19 36245034 36245034 G C LIN37 Missense_Mutation p.E187D 0.29 tolerated(0.38) probably_damaging(0.978) TCGA-OL-A5RZ-01 19 36884213 36884213 G A ZFP82 Silent p.C343C 0.14 TCGA-OL-A5RZ-01 19 46664523 46664523 A G IGFL2 3'UTR 0.25 TCGA-OL-A5RZ-01 19 53571593 53571593 G T ZNF160 Missense_Mutation p.P732T 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-OL-A5RZ-01 19 55526454 55526454 C A GP6 Missense_Mutation p.V287F 0.26 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-OL-A5RZ-01 19 55591790 55591790 G T EPS8L1 Intron 0.30 TCGA-OL-A5RZ-01 1 103471446 103471494 CCCTGTAAAACCATCATCATCATCATCATCATCATCATCATCACAATTC - COL11A1 Splice_Site p.X598_splice 0.91 TCGA-OL-A5RZ-01 1 1404015 1404015 C T ATAD3C 3'UTR 0.08 TCGA-OL-A5RZ-01 1 142621001 142621001 C A RP11-417J8.3 Intron 0.17 TCGA-OL-A5RZ-01 1 145441247 145441247 C G TXNIP 3'UTR 0.15 TCGA-OL-A5RZ-01 1 154996992 154996992 C T DCST2 Silent p.A566A 0.19 TCGA-OL-A5RZ-01 1 16946163 16946163 C G RP5-1182A14.5 3'Flank 0.34 TCGA-OL-A5RZ-01 1 169494107 169494107 G T F5 Missense_Mutation p.S1919Y 0.18 deleterious(0.04) possibly_damaging(0.782) TCGA-OL-A5RZ-01 1 197313516 197313516 G T CRB1 Missense_Mutation p.G253V 0.19 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 1 204950942 204950942 C T NFASC Missense_Mutation p.S755L 0.14 deleterious(0) possibly_damaging(0.65) TCGA-OL-A5RZ-01 1 22216535 22216535 G A HSPG2 Silent p.S171S 0.63 TCGA-OL-A5RZ-01 1 245017530 245017530 T C HNRNPU 3'UTR 0.27 TCGA-OL-A5RZ-01 1 26752792 26752792 C T LIN28A Missense_Mutation p.P158L 0.12 deleterious(0) possibly_damaging(0.813) TCGA-OL-A5RZ-01 1 94363437 94363437 C G GCLM Missense_Mutation p.E99Q 0.94 tolerated(0.47) benign(0.034) TCGA-OL-A5RZ-01 20 16337021 16337021 A G KIF16B Missense_Mutation p.V1192A 0.46 deleterious(0.03) benign(0.068) TCGA-OL-A5RZ-01 20 21687072 21687072 G A PAX1 Intron 0.26 TCGA-OL-A5RZ-01 20 30436212 30436212 G A FOXS1 5'Flank 0.24 TCGA-OL-A5RZ-01 20 31023752 31023752 C G ASXL1 Silent p.S1079S 0.34 TCGA-OL-A5RZ-01 20 42092238 42092238 G A SRSF6 3'UTR 0.35 TCGA-OL-A5RZ-01 20 62729247 62729247 C T OPRL1 Missense_Mutation p.T109M 0.17 tolerated(0.06) probably_damaging(0.942) TCGA-OL-A5RZ-01 21 18933695 18933695 G A CXADR Missense_Mutation p.G245E 0.22 deleterious(0.01) probably_damaging(0.957) TCGA-OL-A5RZ-01 21 33765513 33765513 C T C21orf119 5'UTR 0.49 TCGA-OL-A5RZ-01 21 37713805 37713805 G A MORC3 Silent p.R239R 0.18 TCGA-OL-A5RZ-01 21 39671401 39671401 C A KCNJ15 Missense_Mutation p.T73N 0.16 deleterious(0) probably_damaging(0.998) TCGA-OL-A5RZ-01 21 39671427 39671427 G A KCNJ15 Missense_Mutation p.G82R 0.14 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 22 30405064 30405064 G A MTMR3 Missense_Mutation p.R356Q 0.64 deleterious(0.01) benign(0.185) TCGA-OL-A5RZ-01 22 50694243 50694243 G A MAPK12 Silent p.S229S 0.26 TCGA-OL-A5RZ-01 2 114335576 114335576 G A FAM138B RNA 0.17 TCGA-OL-A5RZ-01 2 133540920 133540920 T A NCKAP5 Missense_Mutation p.K1155M 0.27 deleterious(0) probably_damaging(0.989) TCGA-OL-A5RZ-01 2 176960257 176960257 C T HOXD13 3'UTR 0.16 TCGA-OL-A5RZ-01 2 178095037 178095037 T C NFE2L2 3'UTR 0.08 TCGA-OL-A5RZ-01 2 200790568 200790568 C A C2orf69 Missense_Mutation p.P373T 0.28 deleterious(0) possibly_damaging(0.488) TCGA-OL-A5RZ-01 2 202510093 202510093 T A MPP4 Missense_Mutation p.Q585L 0.26 tolerated(0.06) possibly_damaging(0.477) TCGA-OL-A5RZ-01 2 207172629 207172629 C A ZDBF2 Missense_Mutation p.S1126Y 0.09 deleterious(0.01) possibly_damaging(0.608) TCGA-OL-A5RZ-01 2 233347316 233347316 C A ECEL1 Missense_Mutation p.W563L 0.33 deleterious(0) probably_damaging(0.996) TCGA-OL-A5RZ-01 2 24432862 24432862 C T ITSN2 Missense_Mutation p.R1433Q 0.17 deleterious(0) unknown(0) TCGA-OL-A5RZ-01 2 29368177 29368178 - A CLIP4 Frame_Shift_Ins p.N324Kfs*2 0.14 TCGA-OL-A5RZ-01 2 32770855 32770855 C T BIRC6 Silent p.L4246L 0.13 TCGA-OL-A5RZ-01 2 61108902 61108905 CTGA - REL 5'UTR 0.48 TCGA-OL-A5RZ-01 3 121976050 121976050 C G CASR Missense_Mutation p.T103S 0.18 tolerated(0.34) possibly_damaging(0.857) TCGA-OL-A5RZ-01 3 126633525 126633525 T G CHCHD6 Missense_Mutation p.N166K 0.10 deleterious(0.02) benign(0.175) TCGA-OL-A5RZ-01 3 136221598 136221598 C G STAG1 Missense_Mutation p.V234L 0.20 deleterious(0.01) benign(0.405) TCGA-OL-A5RZ-01 3 195298228 195298228 C G APOD Missense_Mutation p.G85A 0.17 deleterious(0.04) possibly_damaging(0.802) TCGA-OL-A5RZ-01 3 36872500 36872500 G A TRANK1 Silent p.D2814D 0.21 TCGA-OL-A5RZ-01 3 57846447 57846447 C T SLMAP Nonsense_Mutation p.R237* 0.71 TCGA-OL-A5RZ-01 3 85932587 85932587 G A CADM2 Missense_Mutation p.V122I 0.22 deleterious(0) probably_damaging(0.968) TCGA-OL-A5RZ-01 4 122725813 122725813 C T EXOSC9 Missense_Mutation p.H141Y 0.20 deleterious(0.02) benign(0.419) TCGA-OL-A5RZ-01 4 1718696 1718696 G T TMEM129 3'UTR 0.17 TCGA-OL-A5RZ-01 4 52861808 52861808 C A LRRC66 Silent p.V460V 0.17 TCGA-OL-A5RZ-01 4 52883476 52883476 A C LRRC66 Missense_Mutation p.L102V 0.12 deleterious(0.05) benign(0.316) TCGA-OL-A5RZ-01 4 65274933 65274933 A G TECRL Missense_Mutation p.L46P 0.26 tolerated_low_confidence(0.05) probably_damaging(0.959) TCGA-OL-A5RZ-01 5 139889648 139889648 T A ANKHD1 Missense_Mutation p.L1329H 0.46 probably_damaging(0.963) TCGA-OL-A5RZ-01 5 140188134 140188134 G A PCDHA4 Silent p.A454A 0.32 TCGA-OL-A5RZ-01 5 170863146 170863146 A G FGF18 Missense_Mutation p.Q40R 0.28 deleterious(0.04) benign(0.358) TCGA-OL-A5RZ-01 5 37108550 37108550 G A C5orf42 Silent p.L3088L 0.11 TCGA-OL-A5RZ-01 5 39203057 39203057 C T FYB Silent p.A12A 0.22 TCGA-OL-A5RZ-01 6 139695089 139695089 C A CITED2 Intron 0.14 TCGA-OL-A5RZ-01 6 144508475 144508475 G A STX11 Silent p.K237K 0.19 TCGA-OL-A5RZ-01 6 160450647 160450647 C T IGF2R Missense_Mutation p.A281V 0.13 deleterious(0) probably_damaging(0.974) TCGA-OL-A5RZ-01 6 161137716 161137716 C A PLG Missense_Mutation p.N236K 0.10 deleterious(0.03) probably_damaging(1) TCGA-OL-A5RZ-01 6 17706675 17706675 G A NUP153 5'Flank 0.12 TCGA-OL-A5RZ-01 6 32724485 32724485 T - HLA-DQB2 Intron 0.13 TCGA-OL-A5RZ-01 6 70646706 70646726 TGCATCATCATGGGTAACTGC - COL19A1 In_Frame_Del p.A260_A266del 0.30 TCGA-OL-A5RZ-01 6 75875406 75875406 C T COL12A1 Missense_Mutation p.G934S 0.28 benign(0.269) TCGA-OL-A5RZ-01 7 107355875 107355875 G A SLC26A4 Missense_Mutation p.R776H 0.30 tolerated_low_confidence(0.14) possibly_damaging(0.694) TCGA-OL-A5RZ-01 7 11676273 11676273 G A THSD7A Missense_Mutation p.A169V 0.32 tolerated(0.83) benign(0.011) TCGA-OL-A5RZ-01 7 134871826 134871826 G A WDR91 Silent p.S659S 0.12 TCGA-OL-A5RZ-01 7 142649695 142649695 C T KEL Silent p.G368G 0.26 TCGA-OL-A5RZ-01 7 151052933 151052933 G A NUB1 Silent p.A189A 0.23 TCGA-OL-A5RZ-01 7 2962874 2962874 G T CARD11 Silent p.S678S 0.49 TCGA-OL-A5RZ-01 7 55211046 55211046 G C EGFR Missense_Mutation p.E97Q 0.06 tolerated(0.19) benign(0.011) TCGA-OL-A5RZ-01 7 72178739 72178739 C T TYW1B Missense_Mutation p.A30T 0.21 tolerated(0.3) benign(0.068) TCGA-OL-A5RZ-01 7 82544297 82544297 G - PCLO Frame_Shift_Del p.R4336Efs*70 0.29 TCGA-OL-A5RZ-01 8 103373850 103373850 G C UBR5 Missense_Mutation p.R23G 0.06 deleterious(0) possibly_damaging(0.791) TCGA-OL-A5RZ-01 8 122641314 122641314 G A HAS2 Silent p.I89I 0.08 TCGA-OL-A5RZ-01 8 71619175 71619175 T C XKR9 Missense_Mutation p.F94L 0.17 tolerated(0.1) benign(0.02) TCGA-OL-A5RZ-01 9 123908390 123908390 C A CNTRL Missense_Mutation p.N1105K 0.35 benign(0.007) TCGA-OL-A5RZ-01 9 139911974 139911974 C T ABCA2 Silent p.A794A 0.40 TCGA-OL-A5RZ-01 9 84202721 84202721 C G TLE1 Missense_Mutation p.G618R 0.26 deleterious(0) probably_damaging(1) TCGA-OL-A5RZ-01 X 103495328 103495328 C T ESX1 Missense_Mutation p.A268T 0.07 deleterious(0.03) unknown(0) TCGA-OL-A5RZ-01 X 114426405 114426405 G A RBMXL3 Missense_Mutation p.G801R 0.07 tolerated_low_confidence(0.05) benign(0.003) TCGA-OL-A5RZ-01 X 120181966 120181966 G A GLUD2 Missense_Mutation p.R143H 0.25 deleterious(0.01) benign(0.132) TCGA-OL-A5RZ-01 X 12939277 12939277 C A TLR8 Missense_Mutation p.S706R 0.29 tolerated(0.55) benign(0.254) TCGA-OL-A5RZ-01 X 151129811 151129811 A T GABRE Missense_Mutation p.L197H 0.27 deleterious(0) probably_damaging(0.954) TCGA-OL-A5RZ-01 X 18622454 18622454 T C CDKL5 Silent p.I470I 0.22 TCGA-OL-A5RZ-01 X 49143720 49143720 G A PPP1R3F 3'UTR 0.10 TCGA-OL-A5RZ-01 X 54099160 54099160 A G FAM120C 3'UTR 0.23 TCGA-OL-A5S0-01 10 46159213 46159213 C G ZFAND4 5'UTR 0.11 TCGA-OL-A5S0-01 10 5681084 5681084 G A ASB13 3'UTR 0.18 TCGA-OL-A5S0-01 10 88988294 88988294 G A NUTM2A Silent p.A219A 0.22 TCGA-OL-A5S0-01 11 65745270 65745270 A G SART1 Missense_Mutation p.Y691C 0.19 deleterious(0) probably_damaging(0.999) TCGA-OL-A5S0-01 11 7818269 7818269 G A OR5P2 Missense_Mutation p.T74I 0.31 deleterious(0.01) possibly_damaging(0.495) TCGA-OL-A5S0-01 12 11081846 11081846 G A PRH2 5'UTR 0.44 TCGA-OL-A5S0-01 12 393556 393556 C A KDM5A 3'UTR 0.21 TCGA-OL-A5S0-01 12 9333694 9333694 G - PZP Frame_Shift_Del p.P575Qfs*9 0.30 TCGA-OL-A5S0-01 14 61748417 61748417 G A TMEM30B 5'UTR 0.35 TCGA-OL-A5S0-01 15 42564278 42564278 G A TMEM87A Missense_Mutation p.T63I 0.24 deleterious(0) benign(0.427) TCGA-OL-A5S0-01 15 45427489 45427489 G C DUOX1 Silent p.P165P 0.44 TCGA-OL-A5S0-01 15 54920583 54920583 C T UNC13C 3'UTR 0.58 TCGA-OL-A5S0-01 16 3065758 3065758 G A CLDN6 Missense_Mutation p.L89F 0.26 tolerated(0.11) probably_damaging(0.987) TCGA-OL-A5S0-01 16 75564025 75564025 G A CHST5 Silent p.P86P 0.14 TCGA-OL-A5S0-01 17 42990695 42990695 T G GFAP Missense_Mutation p.Q241P 0.21 deleterious(0) probably_damaging(0.991) TCGA-OL-A5S0-01 18 44561453 44561453 G A TCEB3B Silent p.H61H 0.52 TCGA-OL-A5S0-01 19 10747113 10747114 - C SLC44A2 Frame_Shift_Ins p.F451Lfs*109 0.27 TCGA-OL-A5S0-01 19 4323007 4323007 A C FSD1 Missense_Mutation p.E355A 0.42 tolerated(0.23) benign(0.122) TCGA-OL-A5S0-01 19 46181214 46181214 G C GIPR Silent p.L325L 0.14 TCGA-OL-A5S0-01 19 49102586 49102586 C T SULT2B1 Missense_Mutation p.R341C 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-OL-A5S0-01 19 57742444 57742444 C T AURKC 5'UTR 0.08 TCGA-OL-A5S0-01 19 9020071 9020071 C T MUC16 Missense_Mutation p.R12475Q 0.29 benign(0.052) TCGA-OL-A5S0-01 1 108115292 108115292 T A VAV3 3'UTR 0.24 TCGA-OL-A5S0-01 1 108115419 108115419 G A VAV3 3'UTR 0.36 TCGA-OL-A5S0-01 1 172547491 172547491 A G SUCO Missense_Mutation p.Y465C 0.33 deleterious(0.01) possibly_damaging(0.75) TCGA-OL-A5S0-01 1 220315180 220315180 G A IARS2 Missense_Mutation p.R817H 0.08 deleterious(0) probably_damaging(0.997) TCGA-OL-A5S0-01 1 28176726 28176726 C T PPP1R8 Silent p.G275G 0.39 TCGA-OL-A5S0-01 21 45746045 45746045 G A PFKL Missense_Mutation p.R698Q 0.08 tolerated(0.12) benign(0.338) TCGA-OL-A5S0-01 21 47421114 47421114 C T COL6A1 Intron 0.29 TCGA-OL-A5S0-01 22 20941287 20941287 C T MED15 3'UTR 0.18 TCGA-OL-A5S0-01 22 30766708 30766708 G A CCDC157 Missense_Mutation p.V272M 0.11 tolerated(0.82) benign(0.031) TCGA-OL-A5S0-01 22 42981174 42981175 - AA POLDIP3 3'UTR 0.33 TCGA-OL-A5S0-01 2 112549996 112549996 T C ANAPC1 Missense_Mutation p.Y1552C 0.48 deleterious(0) possibly_damaging(0.463) TCGA-OL-A5S0-01 2 236792028 236792028 G C AGAP1 Missense_Mutation p.E364Q 0.15 deleterious(0) possibly_damaging(0.9) TCGA-OL-A5S0-01 2 85770343 85770343 G A MAT2A Intron 0.13 TCGA-OL-A5S0-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.29 deleterious(0.04) probably_damaging(0.96) TCGA-OL-A5S0-01 3 186395553 186395553 C G HRG Missense_Mutation p.H487D 0.08 tolerated(0.31) benign(0.052) TCGA-OL-A5S0-01 3 45636514 45636515 - C LIMD1 Frame_Shift_Ins p.A49Rfs*27 0.25 TCGA-OL-A5S0-01 3 49707386 49707386 G T BSN 3'UTR 0.29 TCGA-OL-A5S0-01 5 176026312 176026312 C T GPRIN1 Missense_Mutation p.R175Q 0.19 tolerated(0.15) benign(0.002) TCGA-OL-A5S0-01 5 39126145 39126145 C T FYB Missense_Mutation p.R677Q 0.12 tolerated(0.06) benign(0.037) TCGA-OL-A5S0-01 5 57754229 57754229 G C PLK2 Missense_Mutation p.L208V 0.55 deleterious(0.03) probably_damaging(0.994) TCGA-OL-A5S0-01 6 109283278 109283278 C T ARMC2 Silent p.F700F 0.19 TCGA-OL-A5S0-01 7 87144685 87144685 C T ABCB1 Silent p.P1048P 0.29 TCGA-OL-A5S0-01 8 108315494 108315494 T C ANGPT1 Missense_Mutation p.I304V 0.16 tolerated(0.86) benign(0.009) TCGA-OL-A5S0-01 9 115805355 115805355 T G ZFP37 Missense_Mutation p.S515R 0.09 tolerated(0.06) possibly_damaging(0.649) TCGA-OL-A5S0-01 9 21333117 21333117 G - KLHL9 Frame_Shift_Del p.P581Qfs*42 0.17 TCGA-OL-A5S0-01 9 84608257 84608257 G A SPATA31D1 Missense_Mutation p.D958N 0.38 tolerated(0.5) benign(0.022) TCGA-OL-A5S0-01 X 152018963 152018963 G A NSDHL Missense_Mutation p.R88Q 0.53 tolerated(0.43) benign(0.002) TCGA-OL-A5S0-01 X 153648448 153648448 G - TAZ Intron 0.26 TCGA-OL-A5S0-01 X 1585383 1585388 CGCGAT - P2RY8 In_Frame_Del p.I22_A23del 0.38 TCGA-OL-A66H-01 10 63170376 63170376 C G TMEM26 Missense_Mutation p.V271L 0.38 tolerated(0.08) benign(0.237) TCGA-OL-A66H-01 11 10517183 10517183 C T AMPD3 Missense_Mutation p.R454C 0.09 tolerated(0.08) probably_damaging(0.994) TCGA-OL-A66H-01 11 1092290 1092291 AG - MUC2 Frame_Shift_Del p.Q1370Lfs*24 0.15 TCGA-OL-A66H-01 13 111296743 111296743 C T CARS2 Missense_Mutation p.A469T 0.14 tolerated(0.25) benign(0.004) TCGA-OL-A66H-01 13 45580422 45580422 G A GPALPP1 Missense_Mutation p.D103N 0.21 tolerated(0.19) benign(0.099) TCGA-OL-A66H-01 15 40382568 40382568 G A BMF 3'UTR 0.26 TCGA-OL-A66H-01 15 55700811 55700811 G C C15orf65 5'UTR 0.69 TCGA-OL-A66H-01 17 19584880 19584880 A G SLC47A2 Missense_Mutation p.L459P 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-OL-A66H-01 17 20805959 20805959 C A RP11-344E13.3 RNA 0.24 TCGA-OL-A66H-01 17 8024616 8024616 G T HES7 3'UTR 0.36 TCGA-OL-A66H-01 19 9204371 9204371 T A OR1M1 Missense_Mutation p.F151I 0.47 tolerated(0.87) benign(0.11) TCGA-OL-A66H-01 1 159557749 159557749 G A APCS Missense_Mutation p.S13N 0.33 tolerated(0.28) benign(0.049) TCGA-OL-A66H-01 1 240370194 240370194 G A FMN2 Silent p.E694E 0.34 TCGA-OL-A66H-01 1 27589671 27589671 G A WDTC1 Missense_Mutation p.R26H 0.21 tolerated(0.23) benign(0.001) TCGA-OL-A66H-01 1 51906092 51906092 A G EPS15 Missense_Mutation p.S323P 0.24 tolerated(0.07) benign(0.011) TCGA-OL-A66H-01 20 1919079 1919080 - T SIRPA 3'UTR 0.26 TCGA-OL-A66H-01 20 35155567 35155567 C T DLGAP4 3'UTR 0.35 TCGA-OL-A66H-01 22 45574234 45574234 C A NUP50 Silent p.V152V 0.21 TCGA-OL-A66H-01 3 113438005 113438005 C A NAA50 3'UTR 0.33 TCGA-OL-A66H-01 3 12447485 12447485 C G PPARG Missense_Mutation p.L242V 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-OL-A66H-01 4 100571473 100571473 G A RP11-766F14.2 Missense_Mutation p.R1445W 0.07 deleterious(0) possibly_damaging(0.878) TCGA-OL-A66H-01 4 88411538 88411538 C G SPARCL1 Missense_Mutation p.G473A 0.28 deleterious(0.03) probably_damaging(1) TCGA-OL-A66H-01 5 36114621 36114621 A T LMBRD2 Silent p.I515I 0.21 TCGA-OL-A66H-01 6 26505349 26505349 C A BTN1A1 Silent p.I208I 0.16 TCGA-OL-A66H-01 6 79577332 79577332 G A IRAK1BP1 Silent p.V13V 0.32 TCGA-OL-A66H-01 7 151902226 151902226 C - KMT2C Frame_Shift_Del p.G1309Afs*22 0.21 TCGA-OL-A66H-01 7 151949699 151949699 A T KMT2C Nonsense_Mutation p.C467* 0.50 TCGA-OL-A66H-01 7 82387753 82387753 G T PCLO 3'UTR 0.23 TCGA-OL-A66H-01 8 10464643 10464643 T A RP1L1 Missense_Mutation p.D2322V 0.21 unknown(0) TCGA-OL-A66H-01 X 18919718 18919718 C T PHKA2 Missense_Mutation p.R971H 0.28 deleterious(0.02) benign(0.02) TCGA-OL-A66I-01 11 36292941 36292941 A G COMMD9 3'Flank 0.45 TCGA-OL-A66I-01 11 86521609 86521609 G A PRSS23 3'UTR 0.20 TCGA-OL-A66I-01 13 24860471 24860471 G A SPATA13 Silent p.K807K 0.29 TCGA-OL-A66I-01 13 25671129 25671129 C T PABPC3 Nonsense_Mutation p.R265* 0.11 TCGA-OL-A66I-01 13 75923332 75923332 A G TBC1D4 Missense_Mutation p.L461S 0.10 deleterious(0) probably_damaging(0.999) TCGA-OL-A66I-01 14 75369473 75369473 G C DLST 3'UTR 0.31 TCGA-OL-A66I-01 15 93011523 93011523 G A ST8SIA2 3'UTR 0.16 TCGA-OL-A66I-01 16 23099058 23099058 G A USP31 Missense_Mutation p.T505M 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-OL-A66I-01 16 4790474 4790474 C T C16orf71 Silent p.L199L 0.13 TCGA-OL-A66I-01 16 50783709 50783709 C G CYLD Missense_Mutation p.Q34E 0.14 tolerated_low_confidence(0.11) benign(0.075) TCGA-OL-A66I-01 16 58614550 58614550 C T CNOT1 Missense_Mutation p.E444K 0.08 tolerated(0.06) benign(0.221) TCGA-OL-A66I-01 16 89967200 89967200 G A TCF25 Missense_Mutation p.G460E 0.18 deleterious(0) possibly_damaging(0.588) TCGA-OL-A66I-01 17 10354183 10354183 C G MYH4 Missense_Mutation p.D1299H 0.14 deleterious(0.01) possibly_damaging(0.451) TCGA-OL-A66I-01 17 17696487 17696487 C G RAI1 Silent p.A75A 0.29 TCGA-OL-A66I-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.24 TCGA-OL-A66I-01 17 7641296 7641296 A T DNAH2 Intron 0.05 TCGA-OL-A66I-01 19 10943615 10943616 AT - TMED1 3'UTR 0.28 TCGA-OL-A66I-01 19 34304928 34304928 C - KCTD15 3'UTR 0.40 TCGA-OL-A66I-01 19 35616381 35616381 G A LGI4 Silent p.L444L 0.09 TCGA-OL-A66I-01 19 41248621 41248621 T G C19orf54 Missense_Mutation p.E258A 0.08 tolerated(0.08) benign(0.112) TCGA-OL-A66I-01 19 44832079 44832079 T A ZNF112 Missense_Mutation p.K750I 0.09 deleterious(0.01) possibly_damaging(0.553) TCGA-OL-A66I-01 1 154408480 154408480 C T IL6R Silent p.D281D 0.16 TCGA-OL-A66I-01 1 158576745 158576745 G A OR10Z1 Missense_Mutation p.E173K 0.09 tolerated(1) benign(0.008) TCGA-OL-A66I-01 1 169818727 169818727 G C C1orf112 Silent p.A715A 0.09 TCGA-OL-A66I-01 1 223986088 223986088 G A TP53BP2 Missense_Mutation p.P593S 0.08 deleterious(0.04) possibly_damaging(0.791) TCGA-OL-A66I-01 1 235972478 235972478 C A LYST Missense_Mutation p.C547F 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-OL-A66I-01 1 240963987 240963987 T - RGS7 Intron 0.16 TCGA-OL-A66I-01 1 41303356 41303356 C T KCNQ4 Missense_Mutation p.R589W 0.15 deleterious(0) probably_damaging(1) TCGA-OL-A66I-01 1 52257716 52257716 A C NRD1 Splice_Site p.X1027_splice 0.10 TCGA-OL-A66I-01 1 55619828 55619828 C T USP24 Silent p.R592R 0.13 TCGA-OL-A66I-01 1 6648359 6648359 G A ZBTB48 Missense_Mutation p.R513H 0.32 deleterious(0) probably_damaging(0.976) TCGA-OL-A66I-01 20 3268360 3268360 C A C20orf194 Missense_Mutation p.A802S 0.10 deleterious(0.02) benign(0.068) TCGA-OL-A66I-01 21 31869220 31869220 G C KRTAP19-4 Missense_Mutation p.T70R 0.09 tolerated_low_confidence(0.11) unknown(0) TCGA-OL-A66I-01 21 40795074 40795075 - T LCA5L Frame_Shift_Ins p.R222Kfs*5 0.28 TCGA-OL-A66I-01 2 100903452 100903452 G C LONRF2 Missense_Mutation p.A665G 0.18 tolerated(0.33) possibly_damaging(0.577) TCGA-OL-A66I-01 2 109380657 109380657 T C RANBP2 Missense_Mutation p.I1221T 0.11 deleterious(0) possibly_damaging(0.66) TCGA-OL-A66I-01 2 26725223 26725223 C T OTOF Missense_Mutation p.D219N 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-OL-A66I-01 2 36623762 36623762 A C CRIM1 Missense_Mutation p.N113H 0.16 tolerated(0.17) probably_damaging(0.991) TCGA-OL-A66I-01 2 48809570 48809570 C T STON1-GTF2A1L Nonsense_Mutation p.R600* 0.15 TCGA-OL-A66I-01 3 43122735 43122735 G A POMGNT2 Silent p.G63G 0.14 TCGA-OL-A66I-01 3 50137998 50137998 A G RBM5 Missense_Mutation p.Y148C 0.25 tolerated(0.09) possibly_damaging(0.905) TCGA-OL-A66I-01 3 58641308 58641308 T G FAM3D 5'UTR 0.20 TCGA-OL-A66I-01 4 44449825 44449825 C T KCTD8 Missense_Mutation p.G239E 0.11 deleterious(0) probably_damaging(0.999) TCGA-OL-A66I-01 5 115782950 115782950 G T SEMA6A Missense_Mutation p.L818M 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-OL-A66I-01 5 115782951 115782951 G T SEMA6A Silent p.V817V 0.21 TCGA-OL-A66I-01 5 140263105 140263105 G A PCDHA13 Missense_Mutation p.V418I 0.20 tolerated_low_confidence(0.13) benign(0.039) TCGA-OL-A66I-01 5 36104192 36104192 G A LMBRD2 Nonsense_Mutation p.R682* 0.29 TCGA-OL-A66I-01 6 42980699 42980699 G A MEA1 Missense_Mutation p.A124V 0.09 deleterious(0.05) possibly_damaging(0.862) TCGA-OL-A66I-01 7 100383642 100383642 C G ZAN Missense_Mutation p.S2285R 0.24 unknown(0) TCGA-OL-A66I-01 7 8790942 8790942 G C NXPH1 Missense_Mutation p.G120A 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-OL-A66I-01 7 96651538 96651538 G A DLX5 Missense_Mutation p.R167C 0.35 deleterious(0) possibly_damaging(0.761) TCGA-OL-A66I-01 7 99696810 99696810 C G MCM7 Missense_Mutation p.G140R 0.09 deleterious(0.04) benign(0.036) TCGA-OL-A66I-01 8 11606457 11606457 G C GATA4 Missense_Mutation p.E216Q 0.46 deleterious(0) benign(0.417) TCGA-OL-A66I-01 8 38006255 38006255 C T STAR Missense_Mutation p.V28M 0.08 tolerated(0.25) benign(0.031) TCGA-OL-A66I-01 9 137013427 137013427 T C WDR5 Silent p.D182D 0.11 TCGA-OL-A66I-01 9 139841102 139841102 G T C8G Splice_Site p.X186_splice 0.13 TCGA-OL-A66I-01 X 123540266 123540266 C T TENM1 Missense_Mutation p.E1686K 0.06 tolerated(0.06) benign(0.127) TCGA-OL-A66I-01 X 125298898 125298898 C T DCAF12L2 Missense_Mutation p.R337H 0.40 tolerated(0.56) benign(0.001) TCGA-OL-A66I-01 X 70323187 70323187 C A FOXO4 3'UTR 0.22 TCGA-OL-A66I-01 X 84520170 84520170 A C ZNF711 Silent p.S275S 0.12 TCGA-OL-A66J-01 10 21070635 21070635 A G NEBL 3'UTR 0.19 TCGA-OL-A66J-01 10 42831940 42831940 G A RP11-313J2.1 RNA 0.33 TCGA-OL-A66J-01 10 94654 94654 C T TUBB8 Missense_Mutation p.V60M 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-OL-A66J-01 11 107959361 107959361 A - CUL5 Frame_Shift_Del p.E429Gfs*23 0.32 TCGA-OL-A66J-01 11 3663132 3663132 C T ART5 5'UTR 0.21 TCGA-OL-A66J-01 11 64800004 64800004 C T SNX15 Silent p.F79F 0.44 TCGA-OL-A66J-01 11 787426 787426 T C CEND1 3'UTR 0.41 TCGA-OL-A66J-01 12 123001834 123001834 C T RSRC2 Missense_Mutation p.R181H 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-OL-A66J-01 12 123801768 123801768 C T SBNO1 Missense_Mutation p.G979R 0.33 deleterious(0) probably_damaging(0.994) TCGA-OL-A66J-01 12 54396402 54396402 C G HOXC9 Missense_Mutation p.R243G 0.32 deleterious(0) probably_damaging(0.993) TCGA-OL-A66J-01 12 54769725 54769725 T C ZNF385A Missense_Mutation p.Q54R 0.38 deleterious(0) probably_damaging(0.97) TCGA-OL-A66J-01 14 20852245 20852245 C A TEP1 Missense_Mutation p.R1162S 0.24 tolerated(0.6) benign(0.018) TCGA-OL-A66J-01 14 21840141 21840141 G A SUPT16H Silent p.I74I 0.24 TCGA-OL-A66J-01 14 21868628 21868628 C A CHD8 Missense_Mutation p.W1505L 0.22 deleterious(0.02) benign(0.23) TCGA-OL-A66J-01 14 38061248 38061248 G C FOXA1 Missense_Mutation p.H247Q 0.27 deleterious(0) probably_damaging(1) TCGA-OL-A66J-01 14 91007734 91007734 G A TTC7B Missense_Mutation p.T837I 0.15 deleterious(0) probably_damaging(0.993) TCGA-OL-A66J-01 15 53081276 53081276 C T ONECUT1 Missense_Mutation p.R269Q 0.16 deleterious(0.04) possibly_damaging(0.581) TCGA-OL-A66J-01 15 63889651 63889651 C T FBXL22 Silent p.L20L 0.24 TCGA-OL-A66J-01 15 94983526 94983526 A G MCTP2 Missense_Mutation p.Q736R 0.30 tolerated(0.49) benign(0.099) TCGA-OL-A66J-01 16 30673785 30673785 C G FBRS Missense_Mutation p.S250R 0.25 possibly_damaging(0.514) TCGA-OL-A66J-01 17 704332 704332 G A NXN Missense_Mutation p.P389S 0.22 tolerated(0.22) probably_damaging(0.999) TCGA-OL-A66J-01 17 7307396 7307396 C T TMEM256 Missense_Mutation p.G3E 0.17 tolerated(0.37) probably_damaging(0.931) TCGA-OL-A66J-01 17 9808318 9808318 G T RCVRN Silent p.T60T 0.30 TCGA-OL-A66J-01 18 2778215 2778215 C T SMCHD1 Missense_Mutation p.A1842V 0.33 deleterious(0.02) probably_damaging(0.912) TCGA-OL-A66J-01 18 77170736 77170736 C T NFATC1 Missense_Mutation p.T141M 0.22 tolerated(0.17) probably_damaging(0.978) TCGA-OL-A66J-01 19 19368553 19368553 G A HAPLN4 3'UTR 0.39 TCGA-OL-A66J-01 19 4325395 4325395 T C STAP2 Missense_Mutation p.D326G 0.25 deleterious_low_confidence(0) possibly_damaging(0.571) TCGA-OL-A66J-01 19 45856499 45856499 C T ERCC2 Splice_Site p.X586_splice 0.30 TCGA-OL-A66J-01 1 117142614 117142614 G A IGSF3 Nonsense_Mutation p.R680* 0.21 TCGA-OL-A66J-01 1 154319121 154319121 C T ATP8B2 Missense_Mutation p.T1050M 0.28 deleterious(0) probably_damaging(0.999) TCGA-OL-A66J-01 1 156669764 156669764 G - CRABP2 3'UTR 0.25 TCGA-OL-A66J-01 1 156838347 156838347 G C NTRK1 Missense_Mutation p.D209H 0.09 deleterious(0.01) probably_damaging(0.948) TCGA-OL-A66J-01 1 204228630 204228630 C T PLEKHA6 Missense_Mutation p.E255K 0.30 tolerated(0.16) benign(0.006) TCGA-OL-A66J-01 1 35907883 35907883 C T KIAA0319L Missense_Mutation p.G945E 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-OL-A66J-01 1 40097235 40097235 C T HEYL Missense_Mutation p.R55H 0.28 deleterious(0.02) probably_damaging(1) TCGA-OL-A66J-01 20 13415772 13415772 C T TASP1 Missense_Mutation p.V339M 0.33 tolerated(0.13) possibly_damaging(0.671) TCGA-OL-A66J-01 20 3019115 3019115 A G PTPRA 3'UTR 0.37 TCGA-OL-A66J-01 20 49369564 49369564 C A PARD6B 3'UTR 0.36 TCGA-OL-A66J-01 22 38340200 38340200 C T C22orf23 Silent p.K212K 0.26 TCGA-OL-A66J-01 22 38382254 38382254 T C SOX10 5'Flank 0.12 TCGA-OL-A66J-01 22 41258059 41258059 C T DNAJB7 5'UTR 0.18 TCGA-OL-A66J-01 22 41716713 41716713 A T ZC3H7B Missense_Mutation p.I17F 0.34 deleterious(0) probably_damaging(0.999) TCGA-OL-A66J-01 2 220090180 220090180 C T ATG9A Silent p.K109K 0.23 TCGA-OL-A66J-01 2 234347021 234347021 C A DGKD Missense_Mutation p.L361I 0.36 tolerated(0.06) probably_damaging(0.973) TCGA-OL-A66J-01 3 130452625 130452625 G C PIK3R4 Missense_Mutation p.A406G 0.33 deleterious(0.02) benign(0.028) TCGA-OL-A66J-01 3 143412150 143412150 C T SLC9A9 Splice_Site p.X178_splice 0.31 TCGA-OL-A66J-01 3 158390414 158390414 T G LXN 5'UTR 0.42 TCGA-OL-A66J-01 3 183217542 183217542 G A KLHL6 Missense_Mutation p.T328M 0.27 deleterious(0.02) probably_damaging(0.945) TCGA-OL-A66J-01 3 42602687 42602687 G T SEC22C Missense_Mutation p.P150T 0.42 deleterious(0.04) probably_damaging(1) TCGA-OL-A66J-01 3 44701310 44701310 G A ZNF35 Silent p.Q485Q 0.41 TCGA-OL-A66J-01 3 52097497 52097497 G C LINC00696 Nonsense_Mutation p.S24* 0.38 TCGA-OL-A66J-01 5 140614330 140614330 C T PCDHB18 RNA 0.29 TCGA-OL-A66J-01 5 54929602 54929602 G A SLC38A9 Silent p.I470I 0.27 TCGA-OL-A66J-01 6 127764995 127764995 A G KIAA0408 3'UTR 0.22 TCGA-OL-A66J-01 6 151277147 151277147 C T MTHFD1L Silent p.D581D 0.26 TCGA-OL-A66J-01 6 26124464 26124464 T C HIST1H2AC Missense_Mutation p.S2P 0.26 deleterious_low_confidence(0.01) benign(0.184) TCGA-OL-A66J-01 6 29641083 29641083 G A ZFP57 Missense_Mutation p.R269W 0.25 deleterious(0) probably_damaging(1) TCGA-OL-A66J-01 6 36182131 36182131 G A BRPF3 Missense_Mutation p.G986E 0.26 tolerated(1) probably_damaging(0.927) TCGA-OL-A66J-01 6 47976501 47976501 C T PTCHD4 Missense_Mutation p.R259H 0.20 deleterious(0) probably_damaging(0.996) TCGA-OL-A66J-01 6 84569452 84569452 G A CYB5R4 5'UTR 0.31 TCGA-OL-A66J-01 6 94120444 94120444 T C EPHA7 Missense_Mutation p.K203E 0.25 deleterious(0) probably_damaging(0.999) TCGA-OL-A66J-01 7 98258803 98258803 T A NPTX2 3'UTR 0.29 TCGA-OL-A66J-01 8 1998981 1998981 C G MYOM2 Nonsense_Mutation p.S34* 0.50 TCGA-OL-A66J-01 9 5300176 5300176 C A RLN2 Missense_Mutation p.K160N 0.29 tolerated(0.07) probably_damaging(0.995) TCGA-OL-A66J-01 9 6498069 6498069 C T UHRF2 Missense_Mutation p.R607C 0.07 deleterious(0) probably_damaging(0.999) TCGA-OL-A66J-01 X 118723103 118723103 C T NKRF 3'UTR 0.26 TCGA-OL-A66J-01 X 119059328 119059328 C T NKAP Missense_Mutation p.R368Q 0.14 deleterious(0.01) unknown(0) TCGA-OL-A66J-01 X 149828874 149828874 T C MTM1 Missense_Mutation p.F462L 0.22 tolerated(0.32) benign(0.004) TCGA-OL-A66J-01 X 74296484 74296484 C T ABCB7 Missense_Mutation p.M154I 0.39 tolerated(0.1) benign(0.003) TCGA-OL-A66J-01 X 78426712 78426712 C A GPR174 Missense_Mutation p.L70I 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-OL-A66K-01 10 121657980 121657980 C G SEC23IP Missense_Mutation p.Q69E 0.09 deleterious(0) probably_damaging(0.995) TCGA-OL-A66K-01 10 8111433 8111434 CA - GATA3 Splice_Site p.X309_splice 0.20 TCGA-OL-A66K-01 11 105769081 105769081 G A GRIA4 Missense_Mutation p.M271I 0.16 tolerated(1) benign(0) TCGA-OL-A66K-01 11 113147871 113147871 A C NCAM1 3'Flank 0.13 TCGA-OL-A66K-01 11 118842445 118842445 G A FOXR1 5'UTR 0.33 TCGA-OL-A66K-01 11 124742355 124742355 G A ROBO3 Missense_Mutation p.A413T 0.07 tolerated(0.11) benign(0.129) TCGA-OL-A66K-01 11 6221069 6221069 G C OR52W1 Missense_Mutation p.A206P 0.09 tolerated(0.11) possibly_damaging(0.785) TCGA-OL-A66K-01 12 119968836 119968836 C T CCDC60 Silent p.L507L 0.23 TCGA-OL-A66K-01 12 2797847 2797847 G A CACNA1C Missense_Mutation p.A2055T 0.26 tolerated_low_confidence(0.21) benign(0.001) TCGA-OL-A66K-01 12 51583985 51583985 C T POU6F1 3'UTR 0.38 TCGA-OL-A66K-01 12 57589969 57589969 C T LRP1 Missense_Mutation p.S2934L 0.36 probably_damaging(0.999) TCGA-OL-A66K-01 14 73720553 73720553 G A PAPLN Missense_Mutation p.G369S 0.19 tolerated(0.38) possibly_damaging(0.666) TCGA-OL-A66K-01 15 90623369 90623369 T G ZNF710 3'UTR 0.64 TCGA-OL-A66K-01 16 68855914 68855915 - G CDH1 Frame_Shift_Ins p.A575Gfs*13 0.32 TCGA-OL-A66K-01 17 18058424 18058431 CCCAGAAC - MYO15A Frame_Shift_Del p.Q2743Afs*97 0.26 TCGA-OL-A66K-01 17 27207860 27207860 G C FLOT2 Silent p.A373A 0.43 TCGA-OL-A66K-01 17 73132263 73132263 C T HN1 Nonsense_Mutation p.W127* 0.14 TCGA-OL-A66K-01 17 76157073 76157073 G A C17orf99 Silent p.L36L 0.46 TCGA-OL-A66K-01 17 78157880 78157880 T A CARD14 Missense_Mutation p.L173Q 0.46 deleterious(0) possibly_damaging(0.777) TCGA-OL-A66K-01 19 52327257 52327257 G A FPR3 Missense_Mutation p.A86T 0.05 deleterious(0.02) probably_damaging(0.925) TCGA-OL-A66K-01 1 110259948 110259948 C T GSTM5 Intron 0.51 TCGA-OL-A66K-01 1 47497137 47497137 T A CYP4X1 Missense_Mutation p.S117T 0.14 deleterious(0.01) benign(0) TCGA-OL-A66K-01 1 99772931 99772931 C A LPPR4 3'UTR 0.36 TCGA-OL-A66K-01 20 23066315 23066315 C T CD93 Missense_Mutation p.G172E 0.30 tolerated(0.07) benign(0.132) TCGA-OL-A66K-01 21 35474264 35474265 - T SLC5A3 3'UTR 0.23 TCGA-OL-A66K-01 22 29130481 29130481 C G CHEK2 Missense_Mutation p.D77H 0.39 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-OL-A66K-01 2 178985972 178985972 C T RBM45 Missense_Mutation p.R247C 0.06 tolerated(0.25) benign(0.029) TCGA-OL-A66K-01 2 202257732 202257732 C A TRAK2 Missense_Mutation p.G338V 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-OL-A66K-01 2 71036947 71036947 C T CLEC4F Missense_Mutation p.G528S 0.09 deleterious(0) probably_damaging(1) TCGA-OL-A66K-01 3 111432830 111432830 C T PLCXD2 Missense_Mutation p.R241C 0.18 deleterious(0.04) benign(0.247) TCGA-OL-A66K-01 3 158364565 158364565 C T GFM1 Missense_Mutation p.A134V 0.15 deleterious(0) probably_damaging(0.948) TCGA-OL-A66K-01 3 5261496 5261496 C T EDEM1 3'UTR 0.13 TCGA-OL-A66K-01 3 66271499 66271499 C T SLC25A26 5'UTR 0.15 TCGA-OL-A66K-01 4 128637728 128637728 G A INTU 3'UTR 0.26 TCGA-OL-A66K-01 4 16164064 16164064 C T TAPT1 3'UTR 0.28 TCGA-OL-A66K-01 5 137230184 137230184 G A PKD2L2 Missense_Mutation p.R137H 0.14 tolerated(0.09) benign(0.178) TCGA-OL-A66K-01 5 140794903 140794903 C T PCDHGA10 Missense_Mutation p.R721W 0.08 tolerated_low_confidence(0.11) benign(0.006) TCGA-OL-A66K-01 6 155153526 155153526 G A SCAF8 Missense_Mutation p.R938K 0.37 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-OL-A66K-01 6 56484354 56484354 G A DST Intron 0.30 TCGA-OL-A66K-01 6 74229716 74229716 C T EEF1A1 Missense_Mutation p.V12I 0.09 tolerated_low_confidence(0.27) benign(0.021) TCGA-OL-A66K-01 7 120990486 120990486 C T FAM3C 3'UTR 0.47 TCGA-OL-A66K-01 8 24771948 24771948 G A NEFM Silent p.S214S 0.40 TCGA-OL-A66K-01 8 25268759 25268759 C T DOCK5 Missense_Mutation p.P1853L 0.33 tolerated_low_confidence(0.13) possibly_damaging(0.901) TCGA-OL-A66K-01 8 94937250 94937250 A G PDP1 3'UTR 0.37 TCGA-OL-A66K-01 9 125909224 125909224 T A STRBP Silent p.P416P 0.10 TCGA-OL-A66K-01 9 127998805 127998805 A C HSPA5 3'UTR 0.26 TCGA-OL-A66K-01 9 136509403 136509403 C T DBH Missense_Mutation p.R329C 0.27 deleterious(0) probably_damaging(0.982) TCGA-OL-A66K-01 9 94495597 94495597 C T ROR2 Silent p.P248P 0.37 TCGA-OL-A66K-01 X 138897073 138897073 A G ATP11C Silent p.N133N 0.37 TCGA-OL-A66K-01 X 49023570 49023570 G C MAGIX 3'Flank 0.13 TCGA-OL-A66K-01 X 66943562 66943562 T A AR Missense_Mutation p.L881Q 0.20 deleterious(0) probably_damaging(1) TCGA-OL-A66L-01 10 105363073 105363073 T C SH3PXD2A Silent p.S606S 0.28 TCGA-OL-A66L-01 10 37508073 37508073 G A ANKRD30A Missense_Mutation p.E1089K 0.25 deleterious(0.01) possibly_damaging(0.636) TCGA-OL-A66L-01 10 43127461 43127461 G A ZNF33B Missense_Mutation p.H56Y 0.19 tolerated(0.06) benign(0) TCGA-OL-A66L-01 11 107521617 107521617 C T ELMOD1 Silent p.I210I 0.29 TCGA-OL-A66L-01 11 12904578 12904578 C T TEAD1 Missense_Mutation p.S202L 0.32 tolerated(0.15) benign(0.003) TCGA-OL-A66L-01 11 34153074 34153074 G A NAT10 Missense_Mutation p.E506K 0.19 deleterious(0.01) benign(0.017) TCGA-OL-A66L-01 11 532642 532642 G C HRAS Silent p.L188L 0.27 TCGA-OL-A66L-01 11 59420448 59420448 G T PATL1 Silent p.R389R 0.12 TCGA-OL-A66L-01 11 62559194 62559194 G A TMEM223 Silent p.S91S 0.29 TCGA-OL-A66L-01 12 113716043 113716044 - T TPCN1 Splice_Site p.X483_splice 0.21 TCGA-OL-A66L-01 12 53207787 53207787 G A KRT4 Missense_Mutation p.S19L 0.26 deleterious(0) probably_damaging(0.997) TCGA-OL-A66L-01 12 94698999 94698999 C A PLXNC1 Missense_Mutation p.Q1549K 0.25 tolerated(0.47) benign(0.235) TCGA-OL-A66L-01 13 103547778 103547778 C G METTL21EP RNA 0.23 TCGA-OL-A66L-01 14 106757876 106757876 G C IGHV2-26 Missense_Mutation p.S44C 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-OL-A66L-01 14 24003871 24003871 C G ZFHX2 Missense_Mutation p.D222H 0.29 probably_damaging(0.999) TCGA-OL-A66L-01 14 38064147 38064147 C T FOXA1 Missense_Mutation p.E11K 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-OL-A66L-01 14 77880307 77880307 G A NOXRED1 Missense_Mutation p.R107W 0.06 deleterious(0.05) benign(0.126) TCGA-OL-A66L-01 14 92482099 92482099 C T TRIP11 Missense_Mutation p.R255Q 0.35 tolerated(0.08) possibly_damaging(0.712) TCGA-OL-A66L-01 15 64385903 64385903 G A FAM96A Missense_Mutation p.S22F 0.25 tolerated(0.14) benign(0.002) TCGA-OL-A66L-01 16 11154805 11154805 G A CLEC16A Missense_Mutation p.R681Q 0.39 tolerated(1) benign(0.003) TCGA-OL-A66L-01 16 25123062 25123062 C T LCMT1 5'UTR 0.27 TCGA-OL-A66L-01 16 28619924 28619924 C T SULT1A1 Missense_Mutation p.G50D 0.45 deleterious(0) probably_damaging(1) TCGA-OL-A66L-01 16 30006864 30006864 G C HIRIP3 Silent p.L21L 0.19 TCGA-OL-A66L-01 16 30077131 30077131 C T ALDOA Intron 0.33 TCGA-OL-A66L-01 16 75276554 75276554 C T BCAR1 Silent p.S195S 0.04 TCGA-OL-A66L-01 17 28789076 28789076 C T CPD Missense_Mutation p.S1271L 0.23 tolerated(0.22) benign(0.005) TCGA-OL-A66L-01 17 32953253 32953253 C T TMEM132E Missense_Mutation p.R59W 0.22 deleterious(0) probably_damaging(0.947) TCGA-OL-A66L-01 17 79479379 79479379 A C ACTG1 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-OL-A66L-01 18 29340080 29340080 C T SLC25A52 Missense_Mutation p.R192Q 0.29 deleterious(0.04) benign(0.348) TCGA-OL-A66L-01 19 12907927 12907927 C A PRDX2 Missense_Mutation p.D189Y 0.36 deleterious(0.01) possibly_damaging(0.86) TCGA-OL-A66L-01 19 13251330 13251330 G A NACC1 3'UTR 0.82 TCGA-OL-A66L-01 19 18287996 18287996 A C IFI30 Missense_Mutation p.E177A 0.29 tolerated(0.73) benign(0.007) TCGA-OL-A66L-01 19 49868858 49868858 G C DKKL1 Missense_Mutation p.E92D 0.22 tolerated_low_confidence(0.11) benign(0.056) TCGA-OL-A66L-01 19 54782147 54782147 G A LILRB2 Missense_Mutation p.H409Y 0.28 tolerated(0.65) possibly_damaging(0.52) TCGA-OL-A66L-01 19 55888984 55888984 C T TMEM190 Missense_Mutation p.R40W 0.28 deleterious(0.03) possibly_damaging(0.835) TCGA-OL-A66L-01 19 9801179 9801179 G A ZNF812 Nonsense_Mutation p.Q334* 0.34 TCGA-OL-A66L-01 1 10697300 10697300 G A CASZ1 3'UTR 0.32 TCGA-OL-A66L-01 1 120465004 120465004 G A NOTCH2 Silent p.L1690L 0.38 TCGA-OL-A66L-01 1 147091278 147091278 C T BCL9 Silent p.P439P 0.15 TCGA-OL-A66L-01 1 150040731 150040731 G A VPS45 Silent p.Q46Q 0.23 TCGA-OL-A66L-01 1 155733311 155733311 C T GON4L Missense_Mutation p.M1506I 0.20 deleterious(0.02) benign(0.216) TCGA-OL-A66L-01 1 155869267 155869267 C T RIT1 3'Flank 0.16 TCGA-OL-A66L-01 1 160054498 160054498 C T KCNJ9 Silent p.T226T 0.22 TCGA-OL-A66L-01 1 161680667 161680667 C G FCRLA Missense_Mutation p.T89S 0.28 tolerated(0.24) possibly_damaging(0.531) TCGA-OL-A66L-01 1 175129936 175129936 T C KIAA0040 Missense_Mutation p.K72E 0.19 tolerated(0.06) possibly_damaging(0.801) TCGA-OL-A66L-01 1 32264175 32264175 C G SPOCD1 Silent p.L632L 0.17 TCGA-OL-A66L-01 1 85573779 85573779 G A WDR63 Silent p.K539K 0.20 TCGA-OL-A66L-01 1 92642677 92642677 G A KIAA1107 Missense_Mutation p.E205K 0.15 deleterious(0) possibly_damaging(0.811) TCGA-OL-A66L-01 20 36978003 36978003 G T LBP Silent p.L59L 0.16 TCGA-OL-A66L-01 20 37207472 37207472 C T RALGAPB 3'UTR 0.43 TCGA-OL-A66L-01 20 43093950 43093950 A G C20orf62 5'UTR 0.19 TCGA-OL-A66L-01 21 14417511 14417511 A G RNU6-614P 5'Flank 0.16 TCGA-OL-A66L-01 22 19423218 19423218 G C MRPL40 Silent p.L118L 0.35 TCGA-OL-A66L-01 2 109111839 109111839 G A GCC2 Missense_Mutation p.E1514K 0.28 deleterious(0) benign(0.283) TCGA-OL-A66L-01 2 128389265 128389265 A T MYO7B Missense_Mutation p.H1703L 0.15 tolerated(0.19) benign(0.109) TCGA-OL-A66L-01 2 211512609 211512609 C T CPS1 Missense_Mutation p.S1061L 0.29 deleterious(0) probably_damaging(0.999) TCGA-OL-A66L-01 2 220074758 220074758 G A ABCB6 Silent p.L811L 0.21 TCGA-OL-A66L-01 2 27706747 27706747 C T IFT172 Missense_Mutation p.E132K 0.39 deleterious(0) possibly_damaging(0.562) TCGA-OL-A66L-01 2 29293647 29293647 C T C2orf71 Missense_Mutation p.E1161K 0.31 tolerated(0.15) benign(0.019) TCGA-OL-A66L-01 3 101177835 101177835 C T SENP7 Missense_Mutation p.R83Q 0.21 tolerated(0.49) benign(0.005) TCGA-OL-A66L-01 3 167217986 167217986 C T WDR49 Missense_Mutation p.E644K 0.31 tolerated(0.16) benign(0.219) TCGA-OL-A66L-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.28 deleterious(0.04) probably_damaging(0.96) TCGA-OL-A66L-01 3 33135235 33135235 C T TMPPE Silent p.R151R 0.33 TCGA-OL-A66L-01 3 44489177 44489177 G T ZNF445 Missense_Mutation p.F662L 0.27 tolerated(0.2) benign(0.153) TCGA-OL-A66L-01 3 48493222 48493222 G C ATRIP Missense_Mutation p.E157Q 0.26 deleterious(0) probably_damaging(0.964) TCGA-OL-A66L-01 3 56657417 56657417 T C FAM208A 3'UTR 0.26 TCGA-OL-A66L-01 3 93779814 93779814 T C DHFRL1 Missense_Mutation p.E181G 0.06 deleterious(0.04) benign(0.438) TCGA-OL-A66L-01 3 98188427 98188427 G A OR5K1 Missense_Mutation p.E3K 0.25 tolerated(0.54) benign(0.002) TCGA-OL-A66L-01 4 166946537 166946537 C G TLL1 Missense_Mutation p.S371C 0.46 deleterious(0) benign(0.222) TCGA-OL-A66L-01 4 96052602 96052602 C G BMPR1B Missense_Mutation p.L369V 0.21 deleterious(0) probably_damaging(0.998) TCGA-OL-A66L-01 5 135601970 135601970 A G TRPC7 Missense_Mutation p.I428T 0.20 deleterious(0.02) benign(0.071) TCGA-OL-A66L-01 5 158702238 158702238 G C UBLCP1 Missense_Mutation p.R223T 0.43 tolerated(0.09) benign(0.024) TCGA-OL-A66L-01 5 172561005 172561005 G C CREBRF 3'UTR 0.18 TCGA-OL-A66L-01 5 1878437 1878437 G A IRX4 Silent p.A402A 0.17 TCGA-OL-A66L-01 5 32053903 32053903 G A PDZD2 Missense_Mutation p.R605Q 0.34 tolerated(0.85) probably_damaging(1) TCGA-OL-A66L-01 5 64887392 64887392 C T TRIM23 3'UTR 0.18 TCGA-OL-A66L-01 6 117881577 117881577 G C GOPC 3'UTR 0.52 TCGA-OL-A66L-01 6 12129991 12129991 G C HIVEP1 Splice_Site p.X2026_splice 0.33 TCGA-OL-A66L-01 6 152831425 152831425 C T SYNE1 Missense_Mutation p.E162K 0.28 probably_damaging(0.956) TCGA-OL-A66L-01 6 33284343 33284343 G A ZBTB22 Silent p.L117L 0.27 TCGA-OL-A66L-01 7 139655296 139655296 T C TBXAS1 Missense_Mutation p.V240A 0.27 tolerated(0.15) benign(0.103) TCGA-OL-A66L-01 7 150759748 150759748 C G SLC4A2 Intron 0.22 TCGA-OL-A66L-01 8 20022586 20022586 G A SLC18A1 Silent p.L297L 0.40 TCGA-OL-A66L-01 9 14617967 14617967 T A ZDHHC21 3'UTR 0.38 TCGA-OL-A66L-01 X 107422500 107422500 C T COL4A6 Missense_Mutation p.G768E 0.14 probably_damaging(1) TCGA-OL-A66L-01 X 12840955 12840955 C - PRPS2 3'UTR 0.28 TCGA-OL-A66L-01 X 153588232 153588232 G A FLNA Missense_Mutation p.R1283W 0.22 deleterious(0) possibly_damaging(0.816) TCGA-OL-A66L-01 X 34961677 34961677 C T FAM47B Silent p.R243R 0.29 TCGA-OL-A66L-01 X 48418720 48418720 G A TBC1D25 Missense_Mutation p.G475D 0.39 tolerated(0.68) benign(0.073) TCGA-OL-A66L-01 X 49850705 49850705 C T CLCN5 Silent p.F334F 0.32 TCGA-OL-A66L-01 X 53576133 53576133 C A HUWE1 Missense_Mutation p.K3274N 0.20 benign(0.403) TCGA-OL-A66L-01 X 53576326 53576326 C G HUWE1 Missense_Mutation p.R3210T 0.40 benign(0.227) TCGA-OL-A66L-01 X 64723972 64723972 G A ZC3H12B 3'UTR 0.26 TCGA-OL-A66L-01 X 70749764 70749764 G A OGT 5'Flank 0.38 TCGA-OL-A66L-01 X 77302603 77302603 C T ATP7A 3'UTR 0.12 TCGA-OL-A66L-01 X 77912315 77912315 C G ZCCHC5 3'UTR 0.30 TCGA-OL-A66N-01 10 60562938 60562938 C A BICC1 Missense_Mutation p.A706E 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-OL-A66N-01 10 72539402 72539402 A T TBATA Missense_Mutation p.I125N 0.36 deleterious(0.01) possibly_damaging(0.674) TCGA-OL-A66N-01 11 33569391 33569391 G A KIAA1549L Missense_Mutation p.R859Q 0.11 tolerated(0.18) benign(0.256) TCGA-OL-A66N-01 11 65687843 65687843 T A DRAP1 Missense_Mutation p.F80Y 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-OL-A66N-01 11 68029739 68029739 C T C11orf24 Missense_Mutation p.A242T 0.26 tolerated(1) benign(0) TCGA-OL-A66N-01 12 66358119 66358119 C G HMGA2 3'UTR 0.32 TCGA-OL-A66N-01 12 80865985 80865985 G T PTPRQ Missense_Mutation p.G377W 0.13 deleterious(0) probably_damaging(0.999) TCGA-OL-A66N-01 13 112723485 112723485 G A SOX1 3'UTR 0.09 TCGA-OL-A66N-01 13 32981396 32981396 A G N4BP2L1 Silent p.Y129Y 0.09 TCGA-OL-A66N-01 15 31666447 31666447 G A KLF13 3'UTR 0.21 TCGA-OL-A66N-01 15 42211593 42211593 T A EHD4 Missense_Mutation p.I247F 0.27 tolerated(0.39) possibly_damaging(0.518) TCGA-OL-A66N-01 16 68845692 68845705 ACAAAAATATGTTC - CDH1 Frame_Shift_Del p.K314Hfs*2 0.41 TCGA-OL-A66N-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.26 deleterious(0.05) benign(0.006) TCGA-OL-A66N-01 17 63052692 63052692 G T GNA13 Nonsense_Mutation p.S7* 0.35 TCGA-OL-A66N-01 17 73239194 73239194 G A GGA3 Missense_Mutation p.P160S 0.17 deleterious(0.05) benign(0.376) TCGA-OL-A66N-01 19 11942623 11942623 G T ZNF440 Missense_Mutation p.C211F 0.32 tolerated(0.67) possibly_damaging(0.761) TCGA-OL-A66N-01 19 12774641 12774641 G A MAN2B1 Silent p.F213F 0.12 TCGA-OL-A66N-01 19 12969559 12969559 G A MAST1 Intron 0.18 TCGA-OL-A66N-01 19 48954454 48954454 G A GRWD1 Missense_Mutation p.G330E 0.19 deleterious(0) probably_damaging(0.998) TCGA-OL-A66N-01 19 54599234 54599234 G A OSCAR Silent p.G190G 0.29 TCGA-OL-A66N-01 1 157772290 157772290 G A FCRL1 Missense_Mutation p.R162C 0.09 deleterious(0) probably_damaging(0.982) TCGA-OL-A66N-01 1 160209861 160209861 G A DCAF8 Missense_Mutation p.R117C 0.10 tolerated(0.22) benign(0.003) TCGA-OL-A66N-01 1 169798529 169798529 A G C1orf112 Missense_Mutation p.H418R 0.06 deleterious(0.02) benign(0.093) TCGA-OL-A66N-01 1 234509506 234509506 C T COA6 Silent p.F14F 0.09 TCGA-OL-A66N-01 1 26644573 26644573 C T UBXN11 5'UTR 0.30 TCGA-OL-A66N-01 20 23065386 23065386 C T CD93 Missense_Mutation p.D482N 0.09 tolerated(0.47) benign(0.002) TCGA-OL-A66N-01 20 30956853 30956853 T C ASXL1 Missense_Mutation p.L60P 0.34 deleterious(0) probably_damaging(0.999) TCGA-OL-A66N-01 20 57568761 57568761 G A NELFCD Missense_Mutation p.R526Q 0.41 tolerated(0.09) benign(0.272) TCGA-OL-A66N-01 22 21081560 21081560 G A PI4KA Silent p.L1633L 0.21 TCGA-OL-A66N-01 22 24456399 24456399 T G CABIN1 Missense_Mutation p.V471G 0.33 deleterious(0) possibly_damaging(0.584) TCGA-OL-A66N-01 22 42981179 42981179 T C POLDIP3 3'UTR 0.16 TCGA-OL-A66N-01 22 51048181 51048183 GGT CGTGC MAPK8IP2 Intron 0.26 TCGA-OL-A66N-01 2 136482278 136482278 A G R3HDM1 3'UTR 0.10 TCGA-OL-A66N-01 3 133119206 133119206 G C BFSP2 Silent p.L93L 0.20 TCGA-OL-A66N-01 3 183756404 183756404 A T HTR3D Missense_Mutation p.H376L 0.09 deleterious(0.04) probably_damaging(0.975) TCGA-OL-A66N-01 3 62063839 62063839 G T PTPRG Missense_Mutation p.M174I 0.32 deleterious(0.01) benign(0.078) TCGA-OL-A66N-01 3 62063840 62063840 C T PTPRG Nonsense_Mutation p.Q175* 0.31 TCGA-OL-A66N-01 3 81630374 81630374 G A GBE1 Missense_Mutation p.T463M 0.08 deleterious(0.02) probably_damaging(1) TCGA-OL-A66N-01 4 184166630 184166630 C T WWC2 Silent p.L222L 0.20 TCGA-OL-A66N-01 4 8588916 8588916 C T GPR78 Silent p.A306A 0.27 TCGA-OL-A66N-01 5 140256740 140256740 C T PCDHA12 Silent p.N561N 0.12 TCGA-OL-A66N-01 5 140710384 140710384 G A PCDHGA1 Missense_Mutation p.V45I 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OL-A66N-01 5 17354149 17354149 G - CTD-2139B15.2 Intron 0.24 TCGA-OL-A66N-01 5 56184090 56184090 T C MAP3K1 Missense_Mutation p.V1432A 0.38 deleterious(0) probably_damaging(0.987) TCGA-OL-A66N-01 6 10961554 10961554 C T SYCP2L Missense_Mutation p.R758C 0.10 tolerated(0.07) benign(0.003) TCGA-OL-A66N-01 6 33386038 33386038 T A CUTA 5'UTR 0.38 TCGA-OL-A66N-01 7 193145 193145 G T FAM20C 5'UTR 0.11 TCGA-OL-A66N-01 7 2983905 2983905 C T CARD11 Missense_Mutation p.A209T 0.17 deleterious(0) possibly_damaging(0.816) TCGA-OL-A66N-01 8 10383136 10383136 C T PRSS55 Missense_Mutation p.T14M 0.23 deleterious(0.05) benign(0.016) TCGA-OL-A66N-01 8 22548028 22548028 C T EGR3 Silent p.A374A 0.21 TCGA-OL-A66N-01 8 41581149 41581149 G A ANK1 Silent p.N271N 0.12 TCGA-OL-A66N-01 9 111640275 111640275 C T IKBKAP Silent p.P1285P 0.05 TCGA-OL-A66N-01 9 137309028 137309028 G T RXRA Missense_Mutation p.G212V 0.13 tolerated(0.15) benign(0.137) TCGA-OL-A66N-01 X 103294694 103294694 C T H2BFM Missense_Mutation p.R51C 0.27 tolerated(0.21) benign(0.003) TCGA-OL-A66N-01 X 129271316 129271316 G A AIFM1 Intron 0.18 TCGA-OL-A66N-01 X 138914378 138914378 G A ATP11C 5'UTR 0.19 TCGA-OL-A66N-01 X 155008985 155008985 T C SPRY3 3'UTR 0.15 TCGA-OL-A66N-01 X 27840538 27840538 G A MAGEB10 3'UTR 0.28 TCGA-OL-A66N-01 X 38146278 38146278 G A RPGR Silent p.T658T 0.56 TCGA-OL-A66N-01 X 44008065 44008065 G A EFHC2 Silent p.D742D 0.24 TCGA-OL-A66N-01 X 86880672 86880672 G AA KLHL4 Frame_Shift_Ins p.M401Nfs*11 0.14 TCGA-OL-A66N-01 X 89177122 89177122 G A TGIF2LX Missense_Mutation p.S13N 0.25 tolerated_low_confidence(0.17) benign(0.003) TCGA-OL-A66O-01 10 133958689 133958689 G A JAKMIP3 Missense_Mutation p.G561R 0.15 deleterious(0) probably_damaging(1) TCGA-OL-A66O-01 10 50315821 50315821 C T VSTM4 Missense_Mutation p.R92H 0.48 tolerated(0.26) probably_damaging(0.921) TCGA-OL-A66O-01 10 8115921 8115921 C - GATA3 Frame_Shift_Del p.H424Tfs*52 0.39 TCGA-OL-A66O-01 11 48267178 48267178 C A OR4X2 Missense_Mutation p.P175T 0.09 deleterious(0) probably_damaging(1) TCGA-OL-A66O-01 11 64004669 64004669 A C VEGFB Missense_Mutation p.K129Q 0.68 tolerated(0.26) benign(0.034) TCGA-OL-A66O-01 11 64022867 64022867 G C PLCB3 Splice_Site p.X156_splice 0.37 TCGA-OL-A66O-01 11 64577329 64577330 - A MEN1 Frame_Shift_Ins p.I85Yfs*32 0.40 TCGA-OL-A66O-01 14 105416727 105416727 C T AHNAK2 Silent p.K1687K 0.41 TCGA-OL-A66O-01 15 43814204 43814204 G A MAP1A Missense_Mutation p.R178H 0.37 probably_damaging(0.967) TCGA-OL-A66O-01 17 3819391 3819391 G A P2RX1 Silent p.Y43Y 0.17 TCGA-OL-A66O-01 17 7131091 7131091 G T DVL2 Missense_Mutation p.Q372K 0.27 deleterious(0.01) benign(0.075) TCGA-OL-A66O-01 17 7531377 7531377 C G SHBG 5'Flank 0.27 TCGA-OL-A66O-01 19 19788767 19788767 C T ZNF101 Missense_Mutation p.T33M 0.20 tolerated(1) benign(0) TCGA-OL-A66O-01 19 53079199 53079199 A G ZNF701 Missense_Mutation p.K89E 0.28 tolerated(0.61) probably_damaging(0.987) TCGA-OL-A66O-01 19 5746029 5746029 C T CATSPERD Silent p.L255L 0.17 TCGA-OL-A66O-01 19 7747288 7747288 T C TRAPPC5 Missense_Mutation p.L50P 0.27 deleterious(0) probably_damaging(1) TCGA-OL-A66O-01 1 34204792 34204792 C T CSMD2 Missense_Mutation p.V733I 0.14 tolerated(1) benign(0.005) TCGA-OL-A66O-01 20 22563325 22563325 C G FOXA2 Missense_Mutation p.M185I 0.42 deleterious(0) probably_damaging(0.956) TCGA-OL-A66O-01 21 47978251 47978251 C A DIP2A Missense_Mutation p.A1305D 0.09 deleterious(0.01) benign(0.004) TCGA-OL-A66O-01 22 24129354 24129354 G A SMARCB1 5'UTR 0.08 TCGA-OL-A66O-01 22 29674139 29674146 CTGCATAT AG EWSR1 Nonsense_Mutation p.S122_Y124delins* 0.55 TCGA-OL-A66O-01 22 42141949 42141949 C T MEI1 Silent p.S533S 0.05 TCGA-OL-A66O-01 22 50957914 50957914 T C NCAPH2 Intron 0.12 TCGA-OL-A66O-01 2 128620440 128620444 ATAAA - AMMECR1L 3'UTR 0.30 TCGA-OL-A66O-01 2 74687022 74687022 C T WBP1 Silent p.V65V 0.09 TCGA-OL-A66O-01 2 97498872 97498888 TTCCCTGATGGTGTCAT AG CNNM3 3'UTR 0.14 TCGA-OL-A66O-01 3 169521963 169521963 G A LRRC34 Missense_Mutation p.R179W 0.05 deleterious(0.01) possibly_damaging(0.663) TCGA-OL-A66O-01 5 126213969 126213969 C T MARCH3 Missense_Mutation p.V171M 0.12 tolerated(0.27) benign(0.018) TCGA-OL-A66O-01 5 127523673 127523673 G A SLC12A2 3'UTR 0.07 TCGA-OL-A66O-01 5 140802272 140802272 C T PCDHGA11 Missense_Mutation p.T493M 0.40 tolerated_low_confidence(0.05) benign(0.088) TCGA-OL-A66O-01 6 138192449 138192450 - T TNFAIP3 Frame_Shift_Ins p.K31* 0.32 TCGA-OL-A66O-01 6 168307908 168307908 G T MLLT4 Nonsense_Mutation p.G570* 0.50 TCGA-OL-A66O-01 7 33312783 33312783 A G BBS9 Missense_Mutation p.S288G 0.47 deleterious(0) possibly_damaging(0.839) TCGA-OL-A66O-01 7 77885136 77885136 T C MAGI2 Intron 0.39 TCGA-OL-A66O-01 8 104225185 104225185 C T BAALC Nonsense_Mutation p.R67* 0.41 TCGA-OL-A66O-01 X 100503508 100503508 G A DRP2 Missense_Mutation p.R487H 0.57 deleterious(0) probably_damaging(1) TCGA-OL-A66O-01 X 107464580 107464580 G A COL4A6 Nonsense_Mutation p.Q58* 0.05 TCGA-OL-A66O-01 X 136113606 136113606 G A GPR101 Silent p.T76T 0.29 TCGA-OL-A66O-01 X 136648627 136648627 G C ZIC3 5'UTR 0.48 TCGA-OL-A66O-01 X 30877723 30877723 C A TAB3 5'UTR 0.35 TCGA-OL-A66O-01 X 47102113 47102113 T A USP11 Missense_Mutation p.I569N 0.43 deleterious(0) probably_damaging(1) TCGA-OL-A66O-01 X 54565504 54565504 C T GNL3L Silent p.G17G 0.41 TCGA-OL-A66O-01 X 77381528 77381528 T C PGK1 3'UTR 0.46 TCGA-OL-A66O-01 X 79277884 79277884 A G TBX22 Missense_Mutation p.K39R 0.06 tolerated(0.46) benign(0.005) TCGA-OL-A66P-01 10 104117810 104117810 C T GBF1 Silent p.A218A 0.17 TCGA-OL-A66P-01 10 127843872 127843872 C T ADAM12 Missense_Mutation p.G88D 0.18 tolerated(0.17) probably_damaging(0.999) TCGA-OL-A66P-01 10 68535219 68535220 TT - CTNNA3 Frame_Shift_Del p.D372Pfs*29 0.13 TCGA-OL-A66P-01 10 89717625 89717625 T G PTEN Missense_Mutation p.V217G 0.23 deleterious(0) probably_damaging(0.974) TCGA-OL-A66P-01 11 116747637 116747637 C T SIK3 Intron 0.25 TCGA-OL-A66P-01 11 31123811 31123811 T C DCDC1 Silent p.G632G 0.14 TCGA-OL-A66P-01 11 33566464 33566464 C A KIAA1549L Missense_Mutation p.S678R 0.10 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-OL-A66P-01 11 55136150 55136150 C - OR4A15 Frame_Shift_Del p.A264Vfs*36 0.08 TCGA-OL-A66P-01 11 55419172 55419172 G T OR4S2 Nonsense_Mutation p.E265* 0.17 TCGA-OL-A66P-01 11 55655587 55655587 A G TRIM51 Missense_Mutation p.H196R 0.11 tolerated(0.61) benign(0.002) TCGA-OL-A66P-01 11 64361130 64361130 G T SLC22A12 Missense_Mutation p.A229S 0.19 tolerated(0.41) possibly_damaging(0.458) TCGA-OL-A66P-01 11 66235612 66235612 G A PELI3 Missense_Mutation p.G5R 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-OL-A66P-01 11 66359615 66359615 A G CCDC87 Missense_Mutation p.V291A 0.09 tolerated(0.56) benign(0.002) TCGA-OL-A66P-01 11 74013542 74013542 A G P4HA3 Missense_Mutation p.Y147H 0.15 deleterious(0) probably_damaging(0.999) TCGA-OL-A66P-01 11 76227197 76227197 A C C11orf30 Missense_Mutation p.T509P 0.14 deleterious(0.02) probably_damaging(0.969) TCGA-OL-A66P-01 11 85448662 85448662 T C SYTL2 Missense_Mutation p.M143V 0.06 tolerated(0.26) benign(0.001) TCGA-OL-A66P-01 12 100613858 100613858 G A ACTR6 Missense_Mutation p.R332Q 0.16 deleterious(0) probably_damaging(0.96) TCGA-OL-A66P-01 12 101561946 101561946 T C SLC5A8 Silent p.V416V 0.19 TCGA-OL-A66P-01 12 113753214 113753214 C G SLC8B1 Missense_Mutation p.W354S 0.13 deleterious(0.01) probably_damaging(1) TCGA-OL-A66P-01 12 122460048 122460048 T A BCL7A Missense_Mutation p.D17E 0.16 deleterious(0.03) benign(0.039) TCGA-OL-A66P-01 12 131275388 131275388 A G STX2 3'UTR 0.30 TCGA-OL-A66P-01 12 21790092 21790092 G T LDHB Missense_Mutation p.N250K 0.11 deleterious(0.04) benign(0.205) TCGA-OL-A66P-01 13 103382121 103382127 TCTTCTT - CCDC168 Frame_Shift_Del p.K2345Efs*66 0.10 TCGA-OL-A66P-01 14 102473416 102473416 T C DYNC1H1 Missense_Mutation p.F1930L 0.11 probably_damaging(0.972) TCGA-OL-A66P-01 14 36340997 36340997 G T BRMS1L 3'UTR 0.13 TCGA-OL-A66P-01 15 22940801 22940801 C A CYFIP1 Missense_Mutation p.H356N 0.11 deleterious(0.01) benign(0.355) TCGA-OL-A66P-01 15 51296826 51296826 G A AP4E1 3'UTR 0.24 TCGA-OL-A66P-01 15 57580670 57580670 C T TCF12 3'UTR 0.18 TCGA-OL-A66P-01 15 64025216 64025216 T A HERC1 Silent p.S925S 0.15 TCGA-OL-A66P-01 15 91290665 91290665 C T BLM Missense_Mutation p.R15C 0.17 deleterious(0.02) probably_damaging(0.939) TCGA-OL-A66P-01 15 91312388 91312388 C T BLM Missense_Mutation p.S778F 0.17 deleterious(0) probably_damaging(0.982) TCGA-OL-A66P-01 15 91565455 91565455 C A VPS33B Missense_Mutation p.A9S 0.11 tolerated_low_confidence(0.19) benign(0.009) TCGA-OL-A66P-01 16 15818723 15818723 G A NDE1 3'UTR 0.12 TCGA-OL-A66P-01 16 21666578 21666578 T A METTL9 Missense_Mutation p.I261N 0.09 tolerated(0.29) benign(0.073) TCGA-OL-A66P-01 16 24580068 24580068 C A RBBP6 Missense_Mutation p.S686Y 0.21 deleterious_low_confidence(0) unknown(0) TCGA-OL-A66P-01 16 72164219 72164219 C T PMFBP1 Missense_Mutation p.A559T 0.21 tolerated(0.35) benign(0.015) TCGA-OL-A66P-01 16 82197749 82197749 T C MPHOSPH6 Silent p.E34E 0.21 TCGA-OL-A66P-01 17 1961562 1961562 G A HIC1 Silent p.T545T 0.20 TCGA-OL-A66P-01 17 33884483 33884483 T A SLFN14 Missense_Mutation p.E200V 0.12 deleterious(0) probably_damaging(0.999) TCGA-OL-A66P-01 17 6690141 6690141 G A FBXO39 Missense_Mutation p.E356K 0.09 tolerated(0.1) benign(0.006) TCGA-OL-A66P-01 17 67029936 67029936 G C ABCA9 Missense_Mutation p.L403V 0.10 tolerated(0.11) benign(0.014) TCGA-OL-A66P-01 17 71357829 71357830 - G SDK2 Frame_Shift_Ins p.G1821Rfs*77 0.11 TCGA-OL-A66P-01 17 73555449 73555449 C T LLGL2 Missense_Mutation p.A163V 0.12 tolerated(1) benign(0) TCGA-OL-A66P-01 17 80041684 80041685 - GGATGTGTCCC FASN Frame_Shift_Ins p.F1728Gfs*22 0.11 TCGA-OL-A66P-01 17 80541901 80541901 C A FOXK2 Silent p.A372A 0.13 TCGA-OL-A66P-01 18 21214030 21214030 G T ANKRD29 Silent p.I138I 0.15 TCGA-OL-A66P-01 18 44549314 44549314 C A TCEB3CL Missense_Mutation p.A329S 0.31 tolerated(0.11) benign(0.364) TCGA-OL-A66P-01 19 10166270 10166270 C A C3P1 Intron 0.15 TCGA-OL-A66P-01 19 11892155 11892155 A G ZNF441 Missense_Mutation p.K506E 0.07 deleterious(0.02) possibly_damaging(0.663) TCGA-OL-A66P-01 19 14185248 14185248 A G hsa-mir-1199 Silent p.R347R 0.17 TCGA-OL-A66P-01 19 1881267 1881267 G C ABHD17A Missense_Mutation p.S100C 0.10 tolerated(0.11) benign(0.012) TCGA-OL-A66P-01 19 3771574 3771574 C G RAX2 Missense_Mutation p.S56T 0.10 deleterious(0) probably_damaging(0.95) TCGA-OL-A66P-01 19 45810746 45810746 G A CKM Missense_Mutation p.R314C 0.11 deleterious(0.01) possibly_damaging(0.887) TCGA-OL-A66P-01 19 48035452 48035452 C A ZNF541 Missense_Mutation p.E1097D 0.05 tolerated(0.05) benign(0.048) TCGA-OL-A66P-01 19 51015490 51015490 G C ASPDH Silent p.G237G 0.15 TCGA-OL-A66P-01 19 54803161 54803161 G T LILRA3 Silent p.S172S 0.21 TCGA-OL-A66P-01 19 55021837 55021837 A G LAIR2 3'UTR 0.33 TCGA-OL-A66P-01 1 103548415 103548415 A G COL11A1 Missense_Mutation p.Y74H 0.14 probably_damaging(0.998) TCGA-OL-A66P-01 1 109857383 109857384 AG - SORT1 Frame_Shift_Del p.S756Cfs*61 0.10 TCGA-OL-A66P-01 1 111730984 111730984 G T DENND2D Missense_Mutation p.Q370K 0.13 tolerated(0.15) benign(0.003) TCGA-OL-A66P-01 1 116206480 116206480 C A VANGL1 Missense_Mutation p.P135T 0.06 tolerated(0.13) benign(0.229) TCGA-OL-A66P-01 1 117491899 117491899 C G PTGFRN Silent p.A306A 0.12 TCGA-OL-A66P-01 1 153043052 153043052 C A SPRR2B 3'UTR 0.07 TCGA-OL-A66P-01 1 156642551 156642551 A G NES Silent p.L477L 0.10 TCGA-OL-A66P-01 1 160178361 160178361 T C PEA15 Intron 0.13 TCGA-OL-A66P-01 1 192627333 192627333 G A RGS13 Missense_Mutation p.G44S 0.11 deleterious(0) probably_damaging(1) TCGA-OL-A66P-01 1 229606400 229606400 A C NUP133 Missense_Mutation p.I668R 0.09 deleterious(0) probably_damaging(0.986) TCGA-OL-A66P-01 1 2493143 2493143 G T TNFRSF14 Missense_Mutation p.G195W 0.29 deleterious(0) probably_damaging(1) TCGA-OL-A66P-01 1 39341679 39341679 A T GJA9 Missense_Mutation p.I31K 0.08 deleterious(0) possibly_damaging(0.683) TCGA-OL-A66P-01 1 39895510 39895510 T C MACF1 Silent p.L3572L 0.14 TCGA-OL-A66P-01 1 43224972 43224972 A G LEPRE1 Silent p.F236F 0.17 TCGA-OL-A66P-01 1 77334331 77334331 C T ST6GALNAC5 Silent p.S55S 0.13 TCGA-OL-A66P-01 20 20007430 20007430 A C NAA20 Missense_Mutation p.M58L 0.10 tolerated(0.35) benign(0.014) TCGA-OL-A66P-01 20 20512399 20512399 C A RALGAPA2 Nonsense_Mutation p.E1172* 0.28 TCGA-OL-A66P-01 20 47606209 47606209 C T ARFGEF2 Silent p.I934I 0.42 TCGA-OL-A66P-01 20 5099295 5099296 CA - PCNA Frame_Shift_Del p.M116Kfs*8 0.21 TCGA-OL-A66P-01 20 60749688 60749688 C T SS18L1 Silent p.Y384Y 0.12 TCGA-OL-A66P-01 21 15954454 15954454 T G SAMSN1 Intron 0.10 TCGA-OL-A66P-01 21 37748520 37748520 T G MORC3 3'UTR 0.06 TCGA-OL-A66P-01 22 18226732 18226732 C T BID Silent p.L66L 0.18 TCGA-OL-A66P-01 22 23824761 23824761 C T AP000345.1 Splice_Site 0.03 TCGA-OL-A66P-01 22 29190994 29190994 T G XBP1 3'UTR 0.07 TCGA-OL-A66P-01 22 38130741 38130741 C G TRIOBP Missense_Mutation p.S1466R 0.26 tolerated_low_confidence(0.1) benign(0.002) TCGA-OL-A66P-01 2 169684973 169684973 T G NOSTRIN Missense_Mutation p.Y102D 0.15 tolerated(0.1) benign(0.045) TCGA-OL-A66P-01 2 175622318 175622318 C T CHRNA1 Missense_Mutation p.R132H 0.12 deleterious(0.03) benign(0.005) TCGA-OL-A66P-01 2 190927223 190927223 C A MSTN Nonsense_Mutation p.E34* 0.10 TCGA-OL-A66P-01 2 201645419 201645419 T C RNU1-133P 3'Flank 0.21 TCGA-OL-A66P-01 2 215865716 215865717 TC - ABCA12 Frame_Shift_Del p.R964Kfs*7 0.11 TCGA-OL-A66P-01 2 48844987 48844987 A G GTF2A1L 5'UTR 0.10 TCGA-OL-A66P-01 2 68691258 68691258 G A FBXO48 3'UTR 0.06 TCGA-OL-A66P-01 2 99779378 99779378 C T LIPT1 Missense_Mutation p.P320S 0.10 tolerated(0.14) possibly_damaging(0.585) TCGA-OL-A66P-01 3 132202420 132202420 A G DNAJC13 Missense_Mutation p.R1061G 0.13 deleterious(0) possibly_damaging(0.843) TCGA-OL-A66P-01 3 139172005 139172005 G C RBP2 Missense_Mutation p.L120V 0.05 deleterious(0.02) benign(0.227) TCGA-OL-A66P-01 3 14190105 14190105 C T XPC Missense_Mutation p.A793T 0.18 deleterious(0) probably_damaging(1) TCGA-OL-A66P-01 3 151164305 151164306 - T IGSF10 Frame_Shift_Ins p.T1155Nfs*13 0.10 TCGA-OL-A66P-01 3 164905769 164905769 T A SLITRK3 Missense_Mutation p.K950N 0.09 tolerated_low_confidence(0.41) benign(0.023) TCGA-OL-A66P-01 3 190341199 190341199 A G IL1RAP Missense_Mutation p.E257G 0.25 deleterious(0.03) benign(0.419) TCGA-OL-A66P-01 3 193382741 193382741 C T OPA1 Nonsense_Mutation p.R894* 0.30 TCGA-OL-A66P-01 3 58087951 58087951 G A FLNB Missense_Mutation p.R456Q 0.14 deleterious(0) possibly_damaging(0.871) TCGA-OL-A66P-01 4 151170836 151170836 G A DCLK2 Missense_Mutation p.M708I 0.12 tolerated(0.1) benign(0.219) TCGA-OL-A66P-01 4 37447535 37447535 A T KIAA1239 Missense_Mutation p.M1309L 0.18 tolerated(0.32) benign(0.01) TCGA-OL-A66P-01 4 39459252 39459252 C T RPL9 Missense_Mutation p.R71Q 0.08 deleterious(0.03) benign(0.092) TCGA-OL-A66P-01 4 39929615 39929615 G T PDS5A Missense_Mutation p.P103Q 0.13 deleterious(0) probably_damaging(1) TCGA-OL-A66P-01 5 132213168 132213170 TAC - AFF4 3'UTR 0.13 TCGA-OL-A66P-01 5 133726573 133726573 A G UBE2B 3'UTR 0.14 TCGA-OL-A66P-01 5 133915117 133915117 C T JADE2 3'UTR 0.22 TCGA-OL-A66P-01 5 141303389 141303389 G T KIAA0141 5'UTR 0.12 TCGA-OL-A66P-01 5 154335958 154335958 A C MRPL22 Missense_Mutation p.K75Q 0.06 deleterious(0) probably_damaging(0.979) TCGA-OL-A66P-01 5 32088214 32088214 G A PDZD2 Missense_Mutation p.D1554N 0.19 tolerated(0.47) benign(0.062) TCGA-OL-A66P-01 5 95116093 95116093 T - RHOBTB3 Frame_Shift_Del p.L475* 0.17 TCGA-OL-A66P-01 6 10877484 10877484 T C GCM2 Missense_Mutation p.K78E 0.14 deleterious(0) probably_damaging(0.999) TCGA-OL-A66P-01 6 136597199 136597199 T C BCLAF1 Missense_Mutation p.I488M 0.05 tolerated(0.22) possibly_damaging(0.506) TCGA-OL-A66P-01 6 136990476 136990476 G C MAP3K5 Silent p.V437V 0.14 TCGA-OL-A66P-01 6 26045967 26045968 TG - HIST1H3C Frame_Shift_Del p.C111Rfs*5 0.19 TCGA-OL-A66P-01 6 33381203 33381204 - A PHF1 Frame_Shift_Ins p.Y156Lfs*58 0.12 TCGA-OL-A66P-01 6 36652042 36652043 CC - CDKN1A Frame_Shift_Del p.T55Rfs*7 0.23 TCGA-OL-A66P-01 6 46047595 46047595 T C CLIC5 Missense_Mutation p.S129G 0.14 tolerated_low_confidence(0.23) benign(0.001) TCGA-OL-A66P-01 6 49573460 49573460 G A RHAG 3'UTR 0.23 TCGA-OL-A66P-01 6 56371249 56371249 C G DST Missense_Mutation p.G3863R 0.20 probably_damaging(0.998) TCGA-OL-A66P-01 7 100681176 100681176 G A MUC17 Missense_Mutation p.R2160K 0.13 unknown(0) TCGA-OL-A66P-01 7 105098266 105098266 T C PUS7 Missense_Mutation p.T653A 0.20 tolerated(0.15) benign(0.049) TCGA-OL-A66P-01 7 29915574 29915574 C T WIPF3 Silent p.I73I 0.19 TCGA-OL-A66P-01 7 42003679 42003679 T A GLI3 3'UTR 0.33 TCGA-OL-A66P-01 7 48313481 48313481 G A ABCA13 Silent p.L1406L 0.29 TCGA-OL-A66P-01 7 5521413 5521418 CACAGG - FBXL18 In_Frame_Del p.N715_W717delinsK 0.13 TCGA-OL-A66P-01 8 116616198 116616199 - A TRPS1 Frame_Shift_Ins p.S667Ifs*19 0.17 TCGA-OL-A66P-01 8 23700548 23700548 C T STC1 3'UTR 0.20 TCGA-OL-A66P-01 8 56711520 56711520 A C TGS1 Silent p.A530A 0.21 TCGA-OL-A66P-01 8 77776174 77776174 C G ZFHX4 Missense_Mutation p.C3408W 0.08 probably_damaging(0.994) TCGA-OL-A66P-01 9 36657291 36657291 G A MELK Silent p.A369A 0.16 TCGA-OL-A66P-01 9 90535170 90535170 C G SPATA31C1 RNA 0.16 TCGA-OL-A66P-01 X 103498907 103498907 G A ESX1 Missense_Mutation p.A145V 0.05 tolerated(0.57) benign(0.223) TCGA-OL-A66P-01 X 106185239 106185239 T A MORC4 Silent p.T863T 0.06 TCGA-OL-A66P-01 X 129290508 129290508 G T AIFM1 Missense_Mutation p.A59E 0.12 tolerated_low_confidence(0.28) benign(0.04) TCGA-OL-A66P-01 X 153764231 153764231 T G G6PD Missense_Mutation p.E93A 0.12 tolerated(0.24) benign(0.123) TCGA-OL-A66P-01 X 18665410 18665410 A C RS1 Missense_Mutation p.V76G 0.19 deleterious(0) possibly_damaging(0.83) TCGA-OL-A66P-01 X 35821557 35821557 G C MAGEB16 3'UTR 0.06 TCGA-OL-A66P-01 X 48123306 48123306 C A SSX1 Missense_Mutation p.H140Q 0.10 deleterious(0.05) benign(0) TCGA-OL-A66P-01 X 48123349 48123349 T A SSX1 Missense_Mutation p.S155T 0.10 tolerated(0.19) benign(0.068) TCGA-OL-A66P-01 X 70462171 70462171 A - ZMYM3 Frame_Shift_Del p.K1218Sfs*36 0.11 TCGA-OL-A6VO-01 11 64010673 64010673 G A FKBP2 Silent p.G58G 0.17 TCGA-OL-A6VO-01 11 64533605 64533605 G A SF1 Intron 0.75 TCGA-OL-A6VO-01 11 72287673 72287673 C T PDE2A 3'UTR 0.21 TCGA-OL-A6VO-01 11 77784125 77784125 G A NDUFC2 Missense_Mutation p.R77C 0.12 deleterious(0.03) probably_damaging(0.991) TCGA-OL-A6VO-01 11 77884114 77884114 A G KCTD21 3'UTR 0.76 TCGA-OL-A6VO-01 12 13366432 13366432 C T EMP1 Missense_Mutation p.T33M 0.37 tolerated(0.18) benign(0.035) TCGA-OL-A6VO-01 12 6772298 6772298 G T ING4 5'UTR 0.51 TCGA-OL-A6VO-01 12 97082693 97082693 G T C12orf55 Splice_Site p.X2005_splice 0.12 TCGA-OL-A6VO-01 13 20006614 20006614 A T TPTE2 Silent p.R407R 0.64 TCGA-OL-A6VO-01 13 21355534 21355535 - A XPO4 3'UTR 0.43 TCGA-OL-A6VO-01 14 45398270 45398270 C T KLHL28 Missense_Mutation p.M559I 0.38 deleterious(0.01) benign(0.402) TCGA-OL-A6VO-01 15 79750773 79750773 C T KIAA1024 Missense_Mutation p.R762W 0.15 deleterious(0.02) benign(0.126) TCGA-OL-A6VO-01 17 42271930 42271930 C G ATXN7L3 Missense_Mutation p.D291H 0.76 deleterious(0) probably_damaging(0.999) TCGA-OL-A6VO-01 17 54543810 54543810 G C ANKFN1 Missense_Mutation p.E554Q 0.31 tolerated(0.08) possibly_damaging(0.815) TCGA-OL-A6VO-01 17 7578460 7578460 A T TP53 Missense_Mutation p.V157D 0.76 deleterious(0) probably_damaging(1) TCGA-OL-A6VO-01 17 77758784 77758784 C T CBX2 Silent p.T514T 0.09 TCGA-OL-A6VO-01 18 73001451 73001452 - A TSHZ1 3'UTR 0.23 TCGA-OL-A6VO-01 19 47981031 47981031 C T KPTN Silent p.K265K 0.71 TCGA-OL-A6VO-01 1 120301877 120301877 C T HMGCS2 Silent p.V238V 0.06 TCGA-OL-A6VO-01 1 160326123 160326123 T C NCSTN Missense_Mutation p.L542P 0.06 tolerated(0.14) benign(0.017) TCGA-OL-A6VO-01 1 200882800 200882800 G A C1orf106 3'UTR 0.08 TCGA-OL-A6VO-01 1 22929347 22929347 G C EPHA8 3'UTR 0.36 TCGA-OL-A6VO-01 1 32198621 32198621 G A BAI2 Silent p.S1192S 0.33 TCGA-OL-A6VO-01 1 45295123 45295123 G A PTCH2 Missense_Mutation p.A389V 0.09 deleterious(0.02) benign(0.018) TCGA-OL-A6VO-01 3 12625313 12625313 G A RAF1 3'UTR 0.77 TCGA-OL-A6VO-01 3 150321128 150321128 C G SELT 5'UTR 0.51 TCGA-OL-A6VO-01 4 150474364 150474364 G A RP11-526A4.1 RNA 0.24 TCGA-OL-A6VO-01 5 141052602 141052602 G C ARAP3 Missense_Mutation p.F357L 0.79 deleterious(0) possibly_damaging(0.686) TCGA-OL-A6VO-01 6 10415403 10415403 G A TFAP2A 5'UTR 0.21 TCGA-OL-A6VO-01 6 4061351 4061351 C T PRPF4B 3'UTR 0.29 TCGA-OL-A6VO-01 7 150069681 150069681 C T REPIN1 Missense_Mutation p.R508C 0.67 deleterious(0) probably_damaging(1) TCGA-OL-A6VO-01 7 155100185 155100185 C G INSIG1 3'UTR 0.32 TCGA-OL-A6VO-01 8 43147870 43147870 G A POTEA RNA 0.34 TCGA-OL-A6VO-01 8 97299289 97299289 T C PTDSS1 Missense_Mutation p.L119P 0.59 deleterious(0) probably_damaging(0.939) TCGA-OL-A6VO-01 8 97299290 97299290 C A PTDSS1 Silent p.L119L 0.58 TCGA-OL-A6VO-01 8 97299291 97299291 T C PTDSS1 Missense_Mutation p.F120L 0.59 deleterious(0) probably_damaging(0.999) TCGA-OL-A6VO-01 9 33076659 33076659 A C SMU1 5'Flank 0.33 TCGA-OL-A6VO-01 9 90255325 90255325 G A DAPK1 Missense_Mutation p.A248T 0.78 deleterious(0) probably_damaging(0.998) TCGA-OL-A6VO-01 X 147032563 147032563 T C FMR1 3'UTR 0.52 TCGA-OL-A6VO-01 X 57620673 57620673 C T ZXDB Missense_Mutation p.T731I 0.08 deleterious(0) benign(0.197) TCGA-OL-A6VO-01 X 76972722 76972722 T - ATRX Splice_Site p.X7_splice 0.29 TCGA-OL-A6VQ-01 10 105218229 105218229 C T CALHM1 Missense_Mutation p.A94T 0.12 tolerated(0.1) possibly_damaging(0.587) TCGA-OL-A6VQ-01 10 111895003 111895003 C G ADD3 3'Flank 0.06 TCGA-OL-A6VQ-01 10 113910062 113910062 T A GPAM 3'UTR 0.16 TCGA-OL-A6VQ-01 10 127541757 127541757 C G BCCIP Nonsense_Mutation p.S305* 0.11 TCGA-OL-A6VQ-01 11 124495795 124495795 G A TBRG1 Silent p.L150L 0.09 TCGA-OL-A6VQ-01 11 128328699 128328699 A C ETS1 3'UTR 0.26 TCGA-OL-A6VQ-01 11 31284545 31284545 G C DCDC1 3'UTR 0.23 TCGA-OL-A6VQ-01 11 6292071 6292071 G A CCKBR Intron 0.14 TCGA-OL-A6VQ-01 11 63326064 63326064 C T HRASLS2 Missense_Mutation p.E63K 0.11 deleterious(0) possibly_damaging(0.842) TCGA-OL-A6VQ-01 12 115114241 115114242 - A TBX3 Frame_Shift_Ins p.D326* 0.19 TCGA-OL-A6VQ-01 12 29659820 29659820 C G TMTC1 Missense_Mutation p.E870Q 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-OL-A6VQ-01 12 52385692 52385692 C G ACVR1B Missense_Mutation p.S477C 0.11 deleterious(0) probably_damaging(0.976) TCGA-OL-A6VQ-01 12 64196181 64196181 G A TMEM5 Missense_Mutation p.A247T 0.09 deleterious(0) probably_damaging(0.997) TCGA-OL-A6VQ-01 12 7249615 7249615 A C C1RL Missense_Mutation p.L279R 0.35 deleterious(0) probably_damaging(1) TCGA-OL-A6VQ-01 12 97017621 97017621 C T C12orf55 Missense_Mutation p.A1283V 0.21 tolerated(0.33) benign(0.071) TCGA-OL-A6VQ-01 13 23903958 23903958 G A SACS 3'UTR 0.09 TCGA-OL-A6VQ-01 13 95034697 95034697 C G GPC6 Silent p.L394L 0.07 TCGA-OL-A6VQ-01 13 98675164 98675164 C G IPO5 3'UTR 0.07 TCGA-OL-A6VQ-01 14 70989606 70989606 C A ADAM20 Missense_Mutation p.K673N 0.13 deleterious(0.04) benign(0.067) TCGA-OL-A6VQ-01 14 77843776 77843776 G A SAMD15 Silent p.P5P 0.08 TCGA-OL-A6VQ-01 14 90528796 90528796 C T KCNK13 Missense_Mutation p.R83W 0.10 deleterious(0.01) possibly_damaging(0.717) TCGA-OL-A6VQ-01 15 42500465 42500465 G A VPS39 5'UTR 0.20 TCGA-OL-A6VQ-01 15 72143629 72143629 G A MYO9A Silent p.L2182L 0.18 TCGA-OL-A6VQ-01 16 30034693 30034693 T A C16orf92 Silent p.G6G 0.29 TCGA-OL-A6VQ-01 16 68845693 68845694 - A CDH1 Frame_Shift_Ins p.N315Kfs*6 0.26 TCGA-OL-A6VQ-01 16 68853295 68853295 A - CDH1 Frame_Shift_Del p.T560Rfs*5 0.12 TCGA-OL-A6VQ-01 16 71482638 71482638 T G ZNF23 Missense_Mutation p.R430S 0.16 tolerated(0.85) benign(0.326) TCGA-OL-A6VQ-01 17 26727567 26727567 G A SARM1 3'UTR 0.07 TCGA-OL-A6VQ-01 17 33513866 33513866 C G UNC45B 3'UTR 0.10 TCGA-OL-A6VQ-01 17 33513869 33513869 T C UNC45B 3'UTR 0.10 TCGA-OL-A6VQ-01 17 44111533 44111533 G A KANSL1 Missense_Mutation p.T887M 0.19 deleterious(0) probably_damaging(0.992) TCGA-OL-A6VQ-01 17 9676237 9676237 C T DHRS7C Missense_Mutation p.A193T 0.24 deleterious(0.02) probably_damaging(1) TCGA-OL-A6VQ-01 18 12325900 12325900 G A TUBB6 Missense_Mutation p.S371N 0.10 tolerated_low_confidence(0.37) benign(0.005) TCGA-OL-A6VQ-01 18 35145938 35145938 T C CELF4 5'UTR 0.20 TCGA-OL-A6VQ-01 18 56412899 56412899 A G MALT1 Missense_Mutation p.D638G 0.13 tolerated(0.1) possibly_damaging(0.598) TCGA-OL-A6VQ-01 19 13993644 13993644 G C C19orf57 Missense_Mutation p.R629G 0.05 deleterious(0.01) probably_damaging(0.969) TCGA-OL-A6VQ-01 19 8368908 8368908 G A CD320 Silent p.T111T 0.17 TCGA-OL-A6VQ-01 1 101194799 101194799 G A VCAM1 Silent p.L355L 0.08 TCGA-OL-A6VQ-01 1 10706187 10706187 G A CASZ1 Nonsense_Mutation p.Q1232* 0.11 TCGA-OL-A6VQ-01 1 145438739 145438739 C T TXNIP 5'UTR 0.08 TCGA-OL-A6VQ-01 1 149580988 149580988 A T RP11-277L2.3 5'Flank 0.09 TCGA-OL-A6VQ-01 1 200960838 200960838 G A KIF21B Silent p.L801L 0.09 TCGA-OL-A6VQ-01 1 227178452 227178452 C T CDC42BPA 3'UTR 0.06 TCGA-OL-A6VQ-01 1 230845782 230845782 A T AGT Missense_Mutation p.V272E 0.17 deleterious(0) benign(0) TCGA-OL-A6VQ-01 1 248756792 248756792 G C OR2T10 Missense_Mutation p.S93W 0.11 deleterious(0) probably_damaging(0.995) TCGA-OL-A6VQ-01 1 36889010 36889010 C - OSCP1 Frame_Shift_Del p.V192Cfs*25 0.11 TCGA-OL-A6VQ-01 20 13894425 13894425 C T SEL1L2 Intron 0.15 TCGA-OL-A6VQ-01 20 33447281 33447281 C T GGT7 Missense_Mutation p.A327T 0.16 tolerated(0.26) benign(0.008) TCGA-OL-A6VQ-01 22 41303611 41303611 C T XPNPEP3 Silent p.F271F 0.12 TCGA-OL-A6VQ-01 22 43926759 43926759 C T EFCAB6 Missense_Mutation p.R1440Q 0.15 deleterious(0.01) probably_damaging(0.978) TCGA-OL-A6VQ-01 2 100623722 100623722 G A AFF3 Silent p.I150I 0.15 TCGA-OL-A6VQ-01 2 179318335 179318335 G A DFNB59 Missense_Mutation p.E67K 0.07 tolerated(0.31) benign(0.353) TCGA-OL-A6VQ-01 2 179323252 179323252 G C DFNB59 Missense_Mutation p.E189Q 0.12 tolerated(0.25) benign(0.16) TCGA-OL-A6VQ-01 2 179325110 179325110 G C DFNB59 Missense_Mutation p.E235Q 0.15 deleterious(0.03) possibly_damaging(0.809) TCGA-OL-A6VQ-01 2 64683546 64683546 G A LGALSL Missense_Mutation p.E108K 0.10 tolerated(0.28) benign(0.035) TCGA-OL-A6VQ-01 2 69043323 69043323 C T ARHGAP25 Intron 0.09 TCGA-OL-A6VQ-01 2 96591277 96591277 G A ANKRD36C 3'Flank 0.07 TCGA-OL-A6VQ-01 3 114057698 114057698 C G ZBTB20 3'UTR 0.06 TCGA-OL-A6VQ-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.34 tolerated(0.11) possibly_damaging(0.529) TCGA-OL-A6VQ-01 3 185362116 185362116 A T IGF2BP2 3'UTR 0.08 TCGA-OL-A6VQ-01 3 22424366 22424366 G T HMGB1P5 RNA 0.26 TCGA-OL-A6VQ-01 3 53326360 53326360 G A DCP1A Silent p.P374P 0.15 TCGA-OL-A6VQ-01 4 187004527 187004527 C T TLR3 Missense_Mutation p.H563Y 0.11 deleterious(0.04) possibly_damaging(0.561) TCGA-OL-A6VQ-01 4 7774658 7774658 G A AFAP1 Silent p.V714V 0.17 TCGA-OL-A6VQ-01 5 138707920 138707920 C T SLC23A1 Silent p.L528L 0.11 TCGA-OL-A6VQ-01 5 149677374 149677374 G A ARSI Silent p.Y371Y 0.20 TCGA-OL-A6VQ-01 5 167841479 167841479 C T WWC1 Silent p.F356F 0.08 TCGA-OL-A6VQ-01 5 177547288 177547288 G A N4BP3 Missense_Mutation p.G147D 0.08 deleterious(0) probably_damaging(0.999) TCGA-OL-A6VQ-01 5 179004094 179004094 T C RUFY1 Missense_Mutation p.S283P 0.11 deleterious(0) probably_damaging(0.997) TCGA-OL-A6VQ-01 5 43556041 43556041 G A PAIP1 Missense_Mutation p.S109L 0.11 tolerated(0.37) benign(0.004) TCGA-OL-A6VQ-01 5 45262408 45262408 G A HCN1 Missense_Mutation p.P763L 0.10 deleterious_low_confidence(0.01) benign(0.019) TCGA-OL-A6VQ-01 5 74955123 74955123 C T ANKDD1B Silent p.L338L 0.07 TCGA-OL-A6VQ-01 5 94865919 94865919 C T TTC37 Missense_Mutation p.E256K 0.07 deleterious(0.04) benign(0.117) TCGA-OL-A6VQ-01 5 96253220 96253220 C T ERAP2 Nonsense_Mutation p.Q932* 0.10 TCGA-OL-A6VQ-01 6 109003589 109003589 T - FOXO3 3'UTR 0.57 TCGA-OL-A6VQ-01 6 148869625 148869625 G C SASH1 Missense_Mutation p.E1225D 0.36 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-OL-A6VQ-01 7 100410561 100410561 G T EPHB4 Missense_Mutation p.S642R 0.21 deleterious(0.02) benign(0.148) TCGA-OL-A6VQ-01 7 155538116 155538116 C T RBM33 Silent p.I933I 0.11 TCGA-OL-A6VQ-01 7 17855814 17855814 T A SNX13 Silent p.A648A 0.26 TCGA-OL-A6VQ-01 8 110257570 110257570 G A NUDCD1 Silent p.I480I 0.08 TCGA-OL-A6VQ-01 8 146076043 146076043 G A COMMD5 3'UTR 0.12 TCGA-OL-A6VQ-01 8 30699599 30699599 C T TEX15 Missense_Mutation p.R2312Q 0.24 tolerated(0.07) benign(0.284) TCGA-OL-A6VQ-01 8 41788244 41788244 A T KAT6A 3'UTR 0.07 TCGA-OL-A6VQ-01 8 95953088 95953088 C A TP53INP1 Missense_Mutation p.D28Y 0.11 deleterious(0) probably_damaging(0.994) TCGA-OL-A6VQ-01 9 133513485 133513485 G A FUBP3 3'UTR 0.06 TCGA-OL-A6VQ-01 9 97191518 97191518 C T HIATL1 Silent p.L84L 0.08 TCGA-OL-A6VQ-01 X 134481005 134481005 T A ZNF449 5'UTR 0.14 TCGA-OL-A6VR-01 11 64854064 64854064 G C ZFPL1 Missense_Mutation p.G131A 0.38 deleterious(0) probably_damaging(0.95) TCGA-OL-A6VR-01 15 69339779 69339779 C A NOX5 Silent p.T573T 0.50 TCGA-OL-A6VR-01 16 58621134 58621142 TTCAACAGG - CNOT1 In_Frame_Del p.L133_N135del 0.30 TCGA-OL-A6VR-01 19 19141785 19141785 G A SUGP2 Silent p.S32S 0.53 TCGA-OL-A6VR-01 19 3591085 3591085 G T GIPC3 3'UTR 0.38 TCGA-OL-A6VR-01 1 177915640 177915640 G A SEC16B Missense_Mutation p.H564Y 0.49 deleterious(0) probably_damaging(1) TCGA-OL-A6VR-01 1 181019200 181019200 A G MR1 Missense_Mutation p.T128A 0.44 tolerated(0.08) benign(0.083) TCGA-OL-A6VR-01 1 35227731 35227731 G A GJB4 3'UTR 0.09 TCGA-OL-A6VR-01 3 52941132 52941132 G A SFMBT1 Missense_Mutation p.R762C 0.33 tolerated(0.07) benign(0.001) TCGA-OL-A6VR-01 4 186583362 186583362 G A SORBS2 Missense_Mutation p.A97V 0.50 tolerated(0.05) benign(0.03) TCGA-OL-A6VR-01 5 131820184 131820184 C A IRF1 Missense_Mutation p.L241F 0.11 tolerated(0.41) benign(0.001) TCGA-OL-A6VR-01 5 465276 465276 G A EXOC3 Silent p.A609A 0.55 TCGA-OL-A6VR-01 7 6064209 6064209 G C EIF2AK1 3'UTR 0.12 TCGA-OL-A6VR-01 8 139890157 139890157 G A COL22A1 Missense_Mutation p.A165V 0.09 unknown(0) TCGA-OL-A6VR-01 8 145640136 145640136 C T SLC39A4 Missense_Mutation p.V317I 0.22 tolerated(0.16) benign(0.004) TCGA-OL-A6VR-01 8 17840793 17840793 C T PCM1 Intron 0.08 TCGA-OL-A6VR-01 8 76471160 76471160 G T HNF4G Silent p.L327L 0.09 TCGA-OL-A6VR-01 9 4583132 4583132 G A SLC1A1 Missense_Mutation p.A430T 0.14 tolerated(1) benign(0.05) TCGA-OL-A97C-01 10 129913910 129913910 T A MKI67 Missense_Mutation p.K254N 0.28 deleterious(0.01) benign(0.067) TCGA-OL-A97C-01 10 17865210 17865210 A T MRC1L1 Missense_Mutation p.M67L 0.64 benign(0.024) TCGA-OL-A97C-01 10 64967837 64967837 G A JMJD1C Missense_Mutation p.R1198C 0.33 deleterious(0) probably_damaging(0.999) TCGA-OL-A97C-01 10 75280707 75280707 C T USP54 Missense_Mutation p.G814E 0.35 deleterious(0.03) probably_damaging(1) TCGA-OL-A97C-01 10 93222044 93222045 CT - HECTD2 Intron 0.29 TCGA-OL-A97C-01 10 98369612 98369612 G A PIK3AP1 Missense_Mutation p.T676M 0.42 deleterious(0) probably_damaging(1) TCGA-OL-A97C-01 11 108535924 108535924 A G DDX10 Missense_Mutation p.D15G 0.37 tolerated_low_confidence(0.08) possibly_damaging(0.787) TCGA-OL-A97C-01 11 11986199 11986199 C T DKK3 Missense_Mutation p.V289M 0.16 tolerated(0.14) benign(0.02) TCGA-OL-A97C-01 11 57256461 57256464 AACT - SLC43A1 Splice_Site p.X446_splice 0.26 TCGA-OL-A97C-01 12 102558326 102558355 AAGAGAAGCCTTCACTGATTTGAAACATGC CTGATTTG PARPBP Nonsense_Mutation p.R203* 0.16 TCGA-OL-A97C-01 12 106500284 106500284 C G NUAK1 Missense_Mutation p.R87P 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-OL-A97C-01 12 12874098 12874100 AAC - CDKN1B 3'UTR 0.31 TCGA-OL-A97C-01 12 15035048 15035049 AG - MGP 3'UTR 0.27 TCGA-OL-A97C-01 12 49431602 49431603 TG - KMT2D Frame_Shift_Del p.T3179Sfs*2 0.24 TCGA-OL-A97C-01 12 72057335 72057335 T G ZFC3H1 Missense_Mutation p.E19A 0.41 deleterious_low_confidence(0.01) benign(0.292) TCGA-OL-A97C-01 13 73284209 73284209 T C MZT1 3'UTR 0.33 TCGA-OL-A97C-01 14 76446991 76446993 CTC - TGFB3 In_Frame_Del p.E82del 0.35 TCGA-OL-A97C-01 15 43817775 43817775 G A MAP1A Silent p.Q1368Q 0.10 TCGA-OL-A97C-01 15 64791661 64791661 G A ZNF609 Missense_Mutation p.A15T 0.40 tolerated(0.27) benign(0.012) TCGA-OL-A97C-01 15 67893074 67893074 G T MAP2K5 Missense_Mutation p.G178C 0.18 deleterious(0) probably_damaging(1) TCGA-OL-A97C-01 16 10524812 10524815 TTGT - ATF7IP2 Frame_Shift_Del p.C114Rfs*24 0.15 TCGA-OL-A97C-01 16 7762049 7762049 C A RBFOX1 3'UTR 0.39 TCGA-OL-A97C-01 16 88124767 88124768 CG - RP11-863P13.4 RNA 0.21 TCGA-OL-A97C-01 17 20239384 20239384 A G RN7SL17P 5'Flank 0.10 TCGA-OL-A97C-01 18 28725624 28725624 G A DSC1 Missense_Mutation p.H297Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-OL-A97C-01 19 15226439 15226440 TG - ILVBL Frame_Shift_Del p.Q553Dfs*21 0.17 TCGA-OL-A97C-01 19 16625396 16625396 C T C19orf44 Silent p.S608S 0.09 TCGA-OL-A97C-01 19 49858586 49858586 C A TEAD2 Missense_Mutation p.G155C 0.20 deleterious(0.04) possibly_damaging(0.818) TCGA-OL-A97C-01 19 7626650 7626650 A T PNPLA6 3'Flank 0.23 TCGA-OL-A97C-01 19 8183824 8183824 A G FBN3 Silent p.C1098C 0.06 TCGA-OL-A97C-01 1 100366379 100366379 C T AGL Missense_Mutation p.P1184S 0.27 deleterious(0) probably_damaging(0.989) TCGA-OL-A97C-01 1 151611372 151611372 T G SNX27 Missense_Mutation p.V107G 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-OL-A97C-01 1 152280934 152280934 C T FLG Missense_Mutation p.G2143E 0.08 probably_damaging(0.931) TCGA-OL-A97C-01 1 197111793 197111793 T G ASPM Missense_Mutation p.K530T 0.22 tolerated(0.17) benign(0.07) TCGA-OL-A97C-01 1 207200972 207200972 A G C1orf116 5'UTR 0.43 TCGA-OL-A97C-01 1 231483640 231483640 G A SPRTN Missense_Mutation p.R140H 0.07 deleterious(0) probably_damaging(0.996) TCGA-OL-A97C-01 1 231673054 231673056 CTC - TSNAX In_Frame_Del p.L74del 0.21 TCGA-OL-A97C-01 1 244572182 244572182 A T ADSS 3'UTR 0.24 TCGA-OL-A97C-01 1 32700093 32700093 C A EIF3I 3'Flank 0.28 TCGA-OL-A97C-01 1 32841914 32841914 C G BSDC1 Missense_Mutation p.E386Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-OL-A97C-01 1 35577394 35577394 A G ZMYM1 Missense_Mutation p.H328R 0.39 tolerated_low_confidence(0.06) benign(0.004) TCGA-OL-A97C-01 1 44877992 44877992 C T RNF220 Missense_Mutation p.R75W 0.36 deleterious(0) probably_damaging(0.998) TCGA-OL-A97C-01 20 20243654 20243654 C T C20orf26 Missense_Mutation p.P795S 0.21 tolerated(0.35) benign(0.068) TCGA-OL-A97C-01 20 22565013 22565013 C T FOXA2 5'UTR 0.17 TCGA-OL-A97C-01 20 46285429 46285429 T C NCOA3 3'Flank 0.21 TCGA-OL-A97C-01 22 21384203 21384203 G T SLC7A4 Missense_Mutation p.P474T 0.20 tolerated(0.06) benign(0.089) TCGA-OL-A97C-01 22 43898597 43898597 C T MPPED1 Silent p.R274R 0.17 TCGA-OL-A97C-01 2 139316759 139316760 TG - SPOPL Frame_Shift_Del p.V217Afs*9 0.24 TCGA-OL-A97C-01 2 187540560 187540560 A G ITGAV Missense_Mutation p.N945S 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-OL-A97C-01 2 189871167 189871168 AG - COL3A1 Frame_Shift_Del p.G1065Rfs*28 0.23 TCGA-OL-A97C-01 2 189876543 189876544 AT - COL3A1 3'UTR 0.23 TCGA-OL-A97C-01 2 196788374 196788374 T - DNAH7 Frame_Shift_Del p.N1257Ifs*11 0.60 TCGA-OL-A97C-01 2 242291510 242291511 TT - SEPT2 3'UTR 0.22 TCGA-OL-A97C-01 2 37268412 37268414 ACA - HEATR5B In_Frame_Del p.V907del 0.33 TCGA-OL-A97C-01 3 131217080 131217080 G C MRPL3 Missense_Mutation p.N137K 0.28 tolerated(0.22) benign(0.033) TCGA-OL-A97C-01 3 136342068 136342068 C T STAG1 Missense_Mutation p.A18T 0.09 tolerated_low_confidence(0.29) benign(0) TCGA-OL-A97C-01 3 3215895 3215895 G A CRBN Silent p.D75D 0.08 TCGA-OL-A97C-01 3 47459835 47459835 C T SCAP Silent p.P769P 0.33 TCGA-OL-A97C-01 3 50295062 50295062 G A GNAI2 Silent p.V336V 0.15 TCGA-OL-A97C-01 3 67058648 67058648 G A KBTBD8 Missense_Mutation p.V549I 0.38 tolerated(0.21) benign(0.001) TCGA-OL-A97C-01 4 20255607 20255607 A T SLIT2 Missense_Mutation p.T57S 0.21 tolerated(0.11) benign(0.174) TCGA-OL-A97C-01 4 90856655 90856655 G T MMRN1 Missense_Mutation p.K608N 0.20 deleterious(0.02) possibly_damaging(0.894) TCGA-OL-A97C-01 5 133643882 133643885 GTTA - CDKL3 Frame_Shift_Del p.N437Vfs*3 0.21 TCGA-OL-A97C-01 5 140764694 140764694 T A PCDHGA7 Missense_Mutation p.M743K 0.16 deleterious_low_confidence(0) benign(0.093) TCGA-OL-A97C-01 5 173093 173093 G A PLEKHG4B Missense_Mutation p.V1022M 0.20 deleterious(0.03) probably_damaging(0.985) TCGA-OL-A97C-01 5 175110434 175110434 C T HRH2 Silent p.L66L 0.29 TCGA-OL-A97C-01 5 24491898 24491898 T G CDH10 Missense_Mutation p.N555H 0.18 tolerated(0.06) benign(0.361) TCGA-OL-A97C-01 6 161527719 161527719 C G MAP3K4 Missense_Mutation p.Q1344E 0.37 deleterious(0) probably_damaging(0.997) TCGA-OL-A97C-01 6 27792100 27792100 G A HIST1H4J Silent p.V66V 0.48 TCGA-OL-A97C-01 6 56358875 56358875 A G DST Missense_Mutation p.I4153T 0.32 benign(0.007) TCGA-OL-A97C-01 7 120768511 120768511 G C CPED1 Missense_Mutation p.E460Q 0.10 tolerated(0.19) probably_damaging(0.96) TCGA-OL-A97C-01 7 150174928 150174928 G A GIMAP8 3'UTR 0.06 TCGA-OL-A97C-01 7 2703410 2703410 G A TTYH3 3'UTR 0.07 TCGA-OL-A97C-01 7 31829782 31829784 AGA - PDE1C Intron 0.20 TCGA-OL-A97C-01 7 47983022 47983022 C A PKD1L1 Missense_Mutation p.C44F 0.61 deleterious_low_confidence(0.04) benign(0.005) TCGA-OL-A97C-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.47 deleterious(0.02) probably_damaging(0.974) TCGA-OL-A97C-01 7 76112415 76112415 C A DTX2 Missense_Mutation p.L287M 0.18 tolerated(0.26) possibly_damaging(0.821) TCGA-OL-A97C-01 8 114448939 114448939 G C CSMD3 Missense_Mutation p.L49V 0.30 tolerated_low_confidence(0.09) benign(0.05) TCGA-OL-A97C-01 8 2092880 2092880 C T MYOM2 Missense_Mutation p.A1458V 0.41 deleterious_low_confidence(0.02) benign(0.243) TCGA-OL-A97C-01 9 103054638 103054640 CTG - INVS In_Frame_Del p.A701del 0.27 TCGA-OL-A97C-01 9 124751624 124751624 A G TTLL11 Silent p.C463C 0.10 TCGA-OL-A97C-01 9 37780783 37780783 C T EXOSC3 Missense_Mutation p.A241T 0.06 deleterious(0) probably_damaging(0.981) TCGA-OL-A97C-01 X 10096159 10096159 C T WWC3 Silent p.S746S 0.33 TCGA-OL-A97C-01 X 119005782 119005782 G A RNF113A 5'UTR 0.38 TCGA-OL-A97C-01 X 153590658 153590659 GA - FLNA Frame_Shift_Del p.H870* 0.15 TCGA-OL-A97C-01 X 155010726 155010726 G - SPRY3 3'UTR 0.21 TCGA-OL-A97C-01 X 39922288 39922289 CT - BCOR Frame_Shift_Del p.L1296Ffs*29 0.38 TCGA-OL-A97C-01 X 48801472 48801472 C T OTUD5 Missense_Mutation p.A223T 0.28 deleterious(0) probably_damaging(1) TCGA-OL-A97C-01 X 48923110 48923110 C A CCDC120 Missense_Mutation p.L270I 0.23 tolerated(0.67) benign(0.033) TCGA-OL-A97C-01 X 52681361 52681361 G A SSX7 Missense_Mutation p.T74I 0.32 deleterious(0.04) benign(0.16) TCGA-OL-A97C-01 X 72901491 72901491 T A CHIC1 3'UTR 0.34 TCGA-OL-A97C-01 X 77305137 77305137 T A ATP7A 3'UTR 0.32 TCGA-OL-A97C-01 X 79932306 79932306 A G BRWD3 Silent p.F1737F 0.37 TCGA-PE-A5DC-01 10 103313412 103313412 G A BTRC 3'UTR 0.36 TCGA-PE-A5DC-01 10 116213165 116213165 G A ABLIM1 Nonsense_Mutation p.Q507* 0.09 TCGA-PE-A5DC-01 10 126090320 126090320 C T OAT Missense_Mutation p.C330Y 0.39 deleterious(0) probably_damaging(0.954) TCGA-PE-A5DC-01 10 54048489 54048489 A G PRKG1 Silent p.P571P 0.50 TCGA-PE-A5DC-01 10 68686278 68686278 G A LRRTM3 5'UTR 0.47 TCGA-PE-A5DC-01 10 74326529 74326529 G A MICU1 Missense_Mutation p.S8F 0.40 deleterious_low_confidence(0.03) benign(0.034) TCGA-PE-A5DC-01 10 74923576 74923576 C T ECD Silent p.E40E 0.39 TCGA-PE-A5DC-01 11 14280995 14280995 C T RP11-21L19.1 3'Flank 0.28 TCGA-PE-A5DC-01 11 1492541 1492541 C A MOB2 Silent p.V158V 0.27 TCGA-PE-A5DC-01 11 49974581 49974581 T C OR4C13 Missense_Mutation p.F203L 0.39 tolerated_low_confidence(0.32) benign(0.032) TCGA-PE-A5DC-01 11 64519463 64519463 C G PYGM Missense_Mutation p.Q567H 0.35 tolerated(0.24) benign(0.031) TCGA-PE-A5DC-01 11 66360508 66360508 C A CCDC87 5'UTR 0.18 TCGA-PE-A5DC-01 11 75111450 75111455 GATGAC - RPS3 Intron 0.23 TCGA-PE-A5DC-01 12 105418256 105418256 A C ALDH1L2 Silent p.G906G 0.31 TCGA-PE-A5DC-01 12 106480652 106480660 TGTTCTCAA - NUAK1 Nonsense_Mutation p.F122_K125delins* 0.24 TCGA-PE-A5DC-01 12 109928922 109928922 C G UBE3B Missense_Mutation p.L235V 0.22 tolerated(0.1) benign(0.098) TCGA-PE-A5DC-01 12 110367996 110367996 A T GIT2 3'UTR 0.19 TCGA-PE-A5DC-01 12 120779826 120779826 T G MSI1 3'UTR 0.24 TCGA-PE-A5DC-01 12 120882406 120882406 A C TRIAP1 3'UTR 0.45 TCGA-PE-A5DC-01 12 122669297 122669297 T G LRRC43 Missense_Mutation p.F128V 0.32 tolerated(0.07) probably_damaging(0.998) TCGA-PE-A5DC-01 12 124414288 124414288 C G DNAH10 Silent p.L4080L 0.32 TCGA-PE-A5DC-01 12 32369387 32369387 G A BICD1 Silent p.L140L 0.20 TCGA-PE-A5DC-01 12 49075705 49075730 CACGCGGCGGCCACGCCGCCTCCCCG - KANSL2 Intron 0.34 TCGA-PE-A5DC-01 12 49666681 49666681 A T TUBA1C Missense_Mutation p.I341F 0.29 deleterious_low_confidence(0) benign(0.125) TCGA-PE-A5DC-01 12 5020749 5020749 C T KCNA1 Missense_Mutation p.R69C 0.38 deleterious(0) probably_damaging(1) TCGA-PE-A5DC-01 12 53451843 53451843 G C TENC1 Missense_Mutation p.C361S 0.29 deleterious(0) probably_damaging(0.996) TCGA-PE-A5DC-01 13 25418854 25418854 G A RNF17 Missense_Mutation p.D966N 0.20 tolerated(0.33) benign(0.192) TCGA-PE-A5DC-01 13 25419111 25419111 G T RNF17 Missense_Mutation p.D999Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-PE-A5DC-01 13 25419123 25419123 G A RNF17 Missense_Mutation p.E1003K 0.26 tolerated(0.4) benign(0.132) TCGA-PE-A5DC-01 14 23887444 23887444 G A MYH7 Missense_Mutation p.R1382W 0.08 deleterious(0) probably_damaging(1) TCGA-PE-A5DC-01 14 61190202 61190202 G T SIX4 Silent p.A197A 0.56 TCGA-PE-A5DC-01 14 69261997 69261997 T C ZFP36L1 5'Flank 0.27 TCGA-PE-A5DC-01 14 73743178 73743178 G A NUMB 3'UTR 0.60 TCGA-PE-A5DC-01 14 86094198 86094198 T A FLRT2 3'UTR 0.59 TCGA-PE-A5DC-01 14 95053962 95053962 A G SERPINA5 Missense_Mutation p.K88R 0.58 tolerated(0.63) benign(0.333) TCGA-PE-A5DC-01 15 34640421 34640421 G T NUTM1 Missense_Mutation p.V90F 0.33 deleterious(0.03) benign(0.33) TCGA-PE-A5DC-01 15 41105030 41105030 C T ZFYVE19 Silent p.N320N 0.29 TCGA-PE-A5DC-01 15 43814751 43814751 G A MAP1A Silent p.E360E 0.43 TCGA-PE-A5DC-01 15 44778794 44778804 GAAAATTAGAA - CTDSPL2 Frame_Shift_Del p.K125* 0.31 TCGA-PE-A5DC-01 15 81517722 81517722 C A IL16 5'Flank 0.27 TCGA-PE-A5DC-01 15 85259611 85259611 G A SEC11A 5'UTR 0.53 TCGA-PE-A5DC-01 16 1395284 1395284 G T BAIAP3 Missense_Mutation p.A694S 0.34 tolerated(0.63) benign(0.021) TCGA-PE-A5DC-01 16 3021111 3021111 G C PAQR4 Intron 0.18 TCGA-PE-A5DC-01 16 68856094 68856094 G A CDH1 Silent p.A634A 0.21 TCGA-PE-A5DC-01 17 16638398 16638398 T C CCDC144A Missense_Mutation p.L938P 0.38 deleterious(0.01) benign(0.302) TCGA-PE-A5DC-01 17 18075556 18075556 C T MYO15A Silent p.I3434I 0.28 TCGA-PE-A5DC-01 17 25746840 25746840 T C TBC1D3P5 RNA 0.39 TCGA-PE-A5DC-01 17 28853797 28853797 G T GOSR1 3'UTR 0.23 TCGA-PE-A5DC-01 17 32953280 32953280 G T TMEM132E Missense_Mutation p.V68F 0.39 tolerated(0.09) benign(0.086) TCGA-PE-A5DC-01 17 38253556 38253556 C A NR1D1 Silent p.L44L 0.39 TCGA-PE-A5DC-01 17 45727298 45727298 C G KPNB1 5'UTR 0.45 TCGA-PE-A5DC-01 17 49075939 49075939 C T SPAG9 Silent p.K568K 0.34 TCGA-PE-A5DC-01 17 60598145 60598145 T G TLK2 Missense_Mutation p.N31K 0.35 deleterious_low_confidence(0.02) benign(0.02) TCGA-PE-A5DC-01 17 61613419 61613419 G T KCNH6 Missense_Mutation p.M497I 0.29 deleterious(0) probably_damaging(1) TCGA-PE-A5DC-01 17 76497135 76497135 C A DNAH17-AS1 3'UTR 0.45 TCGA-PE-A5DC-01 18 72999753 72999753 C T TSHZ1 Silent p.A752A 0.25 TCGA-PE-A5DC-01 19 10943288 10943289 - ACCTCA TMED1 3'UTR 0.23 TCGA-PE-A5DC-01 19 1127657 1127657 G A SBNO2 Silent p.L129L 0.21 TCGA-PE-A5DC-01 19 23578125 23578125 A C ZNF91 Splice_Site p.X10_splice 0.27 TCGA-PE-A5DC-01 19 33703874 33703874 A G SLC7A10 Missense_Mutation p.Y131H 0.29 tolerated(0.5) probably_damaging(0.992) TCGA-PE-A5DC-01 19 51480791 51480791 G A KLK7 3'UTR 0.31 TCGA-PE-A5DC-01 19 55558755 55558755 C T RDH13 Missense_Mutation p.G254R 0.31 tolerated(0.54) benign(0.148) TCGA-PE-A5DC-01 19 8564204 8564204 G A PRAM1 Missense_Mutation p.P163L 0.33 tolerated(0.95) benign(0.004) TCGA-PE-A5DC-01 1 149581244 149581244 C T RP11-277L2.3 5'Flank 0.23 TCGA-PE-A5DC-01 1 153633731 153633731 C T SNAPIN Missense_Mutation p.A122V 0.26 tolerated(0.09) possibly_damaging(0.536) TCGA-PE-A5DC-01 1 153634800 153634800 A C ILF2 3'UTR 0.44 TCGA-PE-A5DC-01 1 156615885 156615885 C A BCAN Silent p.V13V 0.31 TCGA-PE-A5DC-01 1 156615886 156615886 C A BCAN Missense_Mutation p.L14M 0.31 tolerated(0.12) unknown(0) TCGA-PE-A5DC-01 1 205113103 205113103 A C DSTYK 3'UTR 0.46 TCGA-PE-A5DC-01 1 206906058 206906058 C T MAPKAPK2 Missense_Mutation p.H400Y 0.39 deleterious_low_confidence(0) unknown(0) TCGA-PE-A5DC-01 1 236341763 236341763 G C GPR137B Missense_Mutation p.V172L 0.14 deleterious(0.02) possibly_damaging(0.792) TCGA-PE-A5DC-01 1 248685080 248685080 C T OR2G6 Missense_Mutation p.L45F 0.33 deleterious(0) benign(0.017) TCGA-PE-A5DC-01 1 49052811 49052811 C G AGBL4 Missense_Mutation p.V378L 0.38 tolerated(0.42) possibly_damaging(0.596) TCGA-PE-A5DC-01 1 63789409 63789409 A G FOXD3 Missense_Mutation p.N227S 0.36 deleterious(0) benign(0.437) TCGA-PE-A5DC-01 1 75684231 75684231 T C SLC44A5 Silent p.K491K 0.35 TCGA-PE-A5DC-01 20 23546655 23546655 C T CST9L Missense_Mutation p.D104N 0.14 deleterious(0.04) probably_damaging(0.924) TCGA-PE-A5DC-01 20 36868033 36868033 G A KIAA1755 Silent p.S548S 0.17 TCGA-PE-A5DC-01 20 39990702 39990702 C G EMILIN3 Missense_Mutation p.V503L 0.33 tolerated(0.59) benign(0.005) TCGA-PE-A5DC-01 20 54573746 54573746 C T CBLN4 Missense_Mutation p.R158H 0.22 tolerated(0.38) probably_damaging(0.996) TCGA-PE-A5DC-01 20 61907911 61907911 C T ARFGAP1 Nonsense_Mutation p.R84* 0.29 TCGA-PE-A5DC-01 21 11097647 11097647 C A BAGE2 Splice_Site 0.05 TCGA-PE-A5DC-01 21 32624364 32624364 C T TIAM1 Missense_Mutation p.D369N 0.10 tolerated(0.07) possibly_damaging(0.484) TCGA-PE-A5DC-01 21 44324236 44324236 G T NDUFV3 Nonsense_Mutation p.E372* 0.26 TCGA-PE-A5DC-01 22 20748932 20748932 C T ZNF74 Missense_Mutation p.A5V 0.53 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-PE-A5DC-01 2 101627398 101627398 A G TBC1D8 Missense_Mutation p.M988T 0.38 deleterious(0) probably_damaging(0.997) TCGA-PE-A5DC-01 2 103378743 103378743 G A TMEM182 Missense_Mutation p.V23M 0.31 deleterious(0.01) probably_damaging(0.961) TCGA-PE-A5DC-01 2 106015823 106015823 G T FHL2 5'Flank 0.35 TCGA-PE-A5DC-01 2 111858020 111858020 C T ACOXL Intron 0.38 TCGA-PE-A5DC-01 2 133402929 133402929 A T GPR39 Missense_Mutation p.E371V 0.52 deleterious(0.01) benign(0.157) TCGA-PE-A5DC-01 2 152506885 152506885 A G NEB Silent p.Y2412Y 0.33 TCGA-PE-A5DC-01 2 178417425 178417462 GGATGAGGCGGTACACGACCGCGGTGAACTCCCCGTCG - TTC30B Frame_Shift_Del p.D11Qfs*20 0.26 TCGA-PE-A5DC-01 2 208441407 208441407 G A CREB1 Intron 0.41 TCGA-PE-A5DC-01 2 210597603 210597615 TTCTTTATTAAAG - MAP2 3'UTR 0.30 TCGA-PE-A5DC-01 2 228855842 228855842 G C SPHKAP Missense_Mutation p.I1611M 0.32 tolerated(0.1) probably_damaging(0.998) TCGA-PE-A5DC-01 2 232393177 232393177 G A NMUR1 Silent p.V185V 0.42 TCGA-PE-A5DC-01 2 234669368 234669368 T G UGT1A8 Intron 0.28 TCGA-PE-A5DC-01 2 26695482 26695482 C G OTOF Missense_Mutation p.G1257R 0.24 tolerated(0.5) benign(0.003) TCGA-PE-A5DC-01 2 31489541 31489541 C - EHD3 Frame_Shift_Del p.P528Rfs*20 0.41 TCGA-PE-A5DC-01 2 48925816 48925821 GAGATT - LHCGR In_Frame_Del p.N267_L268del 0.31 TCGA-PE-A5DC-01 2 56420533 56420533 G A CCDC85A Missense_Mutation p.D400N 0.33 deleterious(0.03) possibly_damaging(0.51) TCGA-PE-A5DC-01 2 58366890 58366890 C A VRK2 Missense_Mutation p.H316N 0.38 tolerated(0.11) benign(0) TCGA-PE-A5DC-01 2 5838534 5838534 C G SOX11 3'UTR 0.38 TCGA-PE-A5DC-01 2 70520828 70520828 G C SNRPG 5'UTR 0.27 TCGA-PE-A5DC-01 2 97514138 97514138 T A ANKRD39 Missense_Mutation p.Q151L 0.37 deleterious(0.02) benign(0.243) TCGA-PE-A5DC-01 2 98341118 98341118 C G ZAP70 Intron 0.33 TCGA-PE-A5DC-01 3 14526664 14526664 G A SLC6A6 3'UTR 0.17 TCGA-PE-A5DC-01 3 184556530 184556530 C G VPS8 Missense_Mutation p.A159G 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-PE-A5DC-01 3 29476234 29476234 C A RBMS3 Missense_Mutation p.Q26K 0.34 tolerated_low_confidence(0.4) benign(0.292) TCGA-PE-A5DC-01 3 47449250 47449250 T C PTPN23 Missense_Mutation p.I356T 0.19 unknown(0) TCGA-PE-A5DC-01 3 52548716 52548716 G T STAB1 Splice_Site p.X1227_splice 0.50 TCGA-PE-A5DC-01 3 97753780 97753780 T C GABRR3 RNA 0.20 TCGA-PE-A5DC-01 4 114277295 114277295 C T ANK2 Silent p.S2507S 0.23 TCGA-PE-A5DC-01 4 186350549 186350549 C G C4orf47 5'UTR 0.28 TCGA-PE-A5DC-01 4 187539493 187539493 C A FAT1 Missense_Mutation p.E2749D 0.31 benign(0.012) TCGA-PE-A5DC-01 4 66280012 66280012 G T EPHA5 Silent p.T559T 0.16 TCGA-PE-A5DC-01 5 140240999 140240999 C T AC005609.1 3'UTR 0.41 TCGA-PE-A5DC-01 5 140564596 140564596 C G PCDHB16 3'UTR 0.40 TCGA-PE-A5DC-01 5 142526879 142526879 T G ARHGAP26 Missense_Mutation p.L641V 0.30 tolerated(0.35) benign(0.364) TCGA-PE-A5DC-01 5 149450043 149450043 G A CSF1R Silent p.L392L 0.33 TCGA-PE-A5DC-01 5 150922996 150922998 TCC - FAT2 In_Frame_Del p.G2564del 0.50 TCGA-PE-A5DC-01 5 156934141 156934141 A G ADAM19 Missense_Mutation p.S305P 0.33 tolerated(0.2) benign(0.018) TCGA-PE-A5DC-01 5 16067597 16067637 TCATCACAACCTCCCCCGAGCTGTTATCTTCTGATAAGTCT - MARCH11 Frame_Shift_Del p.D385Sfs*9 0.21 TCGA-PE-A5DC-01 5 175875473 175875473 T G FAF2 Splice_Site p.X21_splice 0.45 TCGA-PE-A5DC-01 5 32089647 32089647 T G PDZD2 Silent p.A2031A 0.30 TCGA-PE-A5DC-01 5 54516300 54516300 C T MCIDAS Missense_Mutation p.R351H 0.46 deleterious(0.04) benign(0) TCGA-PE-A5DC-01 5 90107064 90107064 C T GPR98 Silent p.Y5329Y 0.31 TCGA-PE-A5DC-01 5 93739293 93739296 GTTA - KIAA0825 Frame_Shift_Del p.N956Gfs*19 0.26 TCGA-PE-A5DC-01 5 94994271 94994271 G C SPATA9 3'UTR 0.67 TCGA-PE-A5DC-01 6 142399958 142399958 C T NMBR Missense_Mutation p.V169M 0.31 tolerated(0.06) possibly_damaging(0.736) TCGA-PE-A5DC-01 6 168708999 168708999 G C DACT2 Missense_Mutation p.H480D 0.63 deleterious(0) possibly_damaging(0.881) TCGA-PE-A5DC-01 6 168709000 168709000 G T DACT2 Silent p.A479A 0.65 TCGA-PE-A5DC-01 6 25913439 25913439 C A SLC17A2 3'UTR 0.33 TCGA-PE-A5DC-01 6 31730839 31730866 GCCAGGGCTCTGGCGGGGTGCCCTTGGT - SAPCD1 Frame_Shift_Del p.Q4Rfs*58 0.37 TCGA-PE-A5DC-01 6 31855981 31855981 T A EHMT2 Missense_Mutation p.N528Y 0.33 deleterious(0.01) possibly_damaging(0.897) TCGA-PE-A5DC-01 6 34555232 34555232 C A C6orf106 3'UTR 0.33 TCGA-PE-A5DC-01 6 36710131 36710131 G A CPNE5 Missense_Mutation p.R566C 0.31 tolerated(0.06) benign(0.066) TCGA-PE-A5DC-01 6 41738393 41738393 C T FRS3 Silent p.R481R 0.30 TCGA-PE-A5DC-01 6 43475012 43475012 T A LRRC73 Silent p.G305G 0.64 TCGA-PE-A5DC-01 6 46847554 46847554 C A GPR116 Splice_Site p.X346_splice 0.40 TCGA-PE-A5DC-01 6 53516336 53516336 A C KLHL31 3'UTR 0.13 TCGA-PE-A5DC-01 6 7249005 7249005 C G RREB1 Missense_Mutation p.A1678G 0.30 deleterious_low_confidence(0.03) benign(0.442) TCGA-PE-A5DC-01 7 100364817 100364817 C G ZAN Missense_Mutation p.I1599M 0.23 unknown(0) TCGA-PE-A5DC-01 7 107831699 107831699 G A NRCAM Silent p.Y644Y 0.46 TCGA-PE-A5DC-01 7 117450855 117450855 G A CTTNBP2 Silent p.S126S 0.16 TCGA-PE-A5DC-01 7 149514987 149514987 A G SSPO Splice_Site 0.29 TCGA-PE-A5DC-01 7 150761400 150761400 G A SLC4A2 Missense_Mutation p.G55R 0.30 tolerated_low_confidence(0.39) benign(0.089) TCGA-PE-A5DC-01 7 76908304 76908311 AATTTGTT - CCDC146 Frame_Shift_Del p.F528Lfs*11 0.23 TCGA-PE-A5DC-01 7 86493602 86493602 T C GRM3 Silent p.S857S 0.31 TCGA-PE-A5DC-01 7 94991698 94991698 G C PON3 Missense_Mutation p.N294K 0.55 deleterious(0) possibly_damaging(0.51) TCGA-PE-A5DC-01 8 110491846 110491846 G C PKHD1L1 Silent p.G3052G 0.26 TCGA-PE-A5DC-01 8 80976817 80976817 T G TPD52 Missense_Mutation p.T51P 0.12 tolerated(0.27) benign(0.03) TCGA-PE-A5DC-01 8 90938625 90938625 C G OSGIN2 3'UTR 0.31 TCGA-PE-A5DC-01 8 95164236 95164236 C G CDH17 Missense_Mutation p.K552N 0.23 tolerated(0.3) benign(0.008) TCGA-PE-A5DC-01 9 109689355 109689355 C T ZNF462 Silent p.P1054P 0.30 TCGA-PE-A5DC-01 9 130942759 130942759 T - CIZ1 Frame_Shift_Del p.K242Nfs*21 0.40 TCGA-PE-A5DC-01 9 139910561 139910561 C T ABCA2 Missense_Mutation p.R1057H 0.30 deleterious(0.05) possibly_damaging(0.81) TCGA-PE-A5DC-01 9 39088514 39088514 G C CNTNAP3 Missense_Mutation p.I1042M 0.25 tolerated(0.08) possibly_damaging(0.784) TCGA-PE-A5DC-01 9 39088523 39088523 T A CNTNAP3 Missense_Mutation p.R1039S 0.28 tolerated(0.07) possibly_damaging(0.77) TCGA-PE-A5DC-01 9 69380350 69380350 G A CR769776.1 Silent p.P27P 0.20 TCGA-PE-A5DC-01 9 79229449 79229449 G A PRUNE2 3'UTR 0.44 TCGA-PE-A5DC-01 9 95218820 95218820 T G ASPN 3'UTR 0.40 TCGA-PE-A5DC-01 9 99006675 99006675 G A HSD17B3 Missense_Mutation p.A203V 0.43 tolerated(0.5) benign(0.182) TCGA-PE-A5DC-01 X 11206927 11206927 G C ARHGAP6 Missense_Mutation p.S333C 0.47 deleterious(0.02) probably_damaging(0.987) TCGA-PE-A5DC-01 X 117054198 117054198 T A KLHL13 Intron 0.26 TCGA-PE-A5DC-01 X 155010577 155010578 GT - SPRY3 3'UTR 0.31 TCGA-PE-A5DC-01 X 22291680 22291680 C T ZNF645 Missense_Mutation p.P191L 0.35 tolerated(0.13) probably_damaging(0.988) TCGA-PE-A5DC-01 X 23723973 23723973 G C ACOT9 Missense_Mutation p.T282S 0.29 tolerated(0.54) benign(0.013) TCGA-PE-A5DC-01 X 26157580 26157580 C A MAGEB18 Missense_Mutation p.L160I 0.43 deleterious(0) benign(0.103) TCGA-PE-A5DC-01 X 71363117 71363117 T A NHSL2 Missense_Mutation p.L1124Q 0.11 deleterious(0) probably_damaging(0.99) TCGA-PE-A5DC-01 X 71493127 71493127 G T RPS4X Silent p.G215G 0.35 TCGA-PE-A5DD-01 10 48383987 48383987 C T RBP3 Splice_Site p.X1082_splice 0.36 TCGA-PE-A5DD-01 10 91163264 91163264 C T IFIT1 Missense_Mutation p.A411V 0.08 tolerated(0.28) benign(0.001) TCGA-PE-A5DD-01 11 10521756 10521756 T C AMPD3 Missense_Mutation p.Y570H 0.40 tolerated(0.06) benign(0.097) TCGA-PE-A5DD-01 11 124617043 124617043 C G NRGN 3'UTR 0.36 TCGA-PE-A5DD-01 11 128842567 128842567 C T ARHGAP32 Missense_Mutation p.M1264I 0.29 deleterious_low_confidence(0.05) benign(0.008) TCGA-PE-A5DD-01 11 12959223 12959223 C T TEAD1 3'UTR 0.21 TCGA-PE-A5DD-01 11 4389026 4389026 C G OR52B4 Missense_Mutation p.R167T 0.38 deleterious(0) probably_damaging(0.911) TCGA-PE-A5DD-01 11 55861250 55861250 C T OR8I2 Missense_Mutation p.S156L 0.34 deleterious(0.01) benign(0.065) TCGA-PE-A5DD-01 12 124427988 124427988 G T CCDC92 Missense_Mutation p.S29R 0.31 deleterious(0) probably_damaging(0.999) TCGA-PE-A5DD-01 12 56995558 56995558 C T BAZ2A Silent p.L1283L 0.41 TCGA-PE-A5DD-01 12 56995588 56995588 C T BAZ2A Silent p.L1273L 0.35 TCGA-PE-A5DD-01 13 103382504 103382504 C T CCDC168 Missense_Mutation p.R2219K 0.57 tolerated(0.14) unknown(0) TCGA-PE-A5DD-01 13 46055382 46055382 G T COG3 Silent p.L189L 0.47 TCGA-PE-A5DD-01 14 39760281 39760281 C A CTAGE5 Missense_Mutation p.T122K 0.30 deleterious(0.03) benign(0.022) TCGA-PE-A5DD-01 14 91975859 91975859 C T SMEK1 Missense_Mutation p.E45K 0.45 tolerated(0.07) probably_damaging(0.953) TCGA-PE-A5DD-01 15 101719167 101719167 C T CHSY1 Missense_Mutation p.E279K 0.10 tolerated(0.05) benign(0.329) TCGA-PE-A5DD-01 15 43622012 43622012 C A LCMT2 Missense_Mutation p.A226S 0.51 deleterious(0.03) benign(0.141) TCGA-PE-A5DD-01 15 45398769 45398769 G C DUOX2 Silent p.L634L 0.57 TCGA-PE-A5DD-01 15 83807916 83807916 G A HDGFRP3 3'UTR 0.11 TCGA-PE-A5DD-01 15 86266397 86266397 G A AKAP13 Silent p.K2201K 0.50 TCGA-PE-A5DD-01 16 68845757 68845757 C T CDH1 Nonsense_Mutation p.R335* 0.44 TCGA-PE-A5DD-01 16 85100730 85100730 C T KIAA0513 Missense_Mutation p.A18V 0.25 tolerated_low_confidence(0.37) benign(0.027) TCGA-PE-A5DD-01 17 27251286 27251286 T C PHF12 Missense_Mutation p.N119S 0.06 deleterious(0.01) possibly_damaging(0.719) TCGA-PE-A5DD-01 17 56083287 56083287 C T SRSF1 Missense_Mutation p.E143K 0.50 tolerated(0.36) benign(0.282) TCGA-PE-A5DD-01 17 56598421 56598421 C G SEPT4 Missense_Mutation p.E420D 0.41 deleterious(0) probably_damaging(0.995) TCGA-PE-A5DD-01 17 56598442 56598442 C G SEPT4 Silent p.V413V 0.48 TCGA-PE-A5DD-01 18 61329183 61329183 C T SERPINB3 5'UTR 0.53 TCGA-PE-A5DD-01 19 32845390 32845390 G A ZNF507 Missense_Mutation p.D552N 0.44 tolerated(0.16) probably_damaging(0.956) TCGA-PE-A5DD-01 19 35551280 35551280 C T HPN Missense_Mutation p.R162C 0.11 deleterious(0) probably_damaging(0.995) TCGA-PE-A5DD-01 19 47910643 47910643 C G MEIS3 Missense_Mutation p.D347H 0.34 deleterious(0) possibly_damaging(0.746) TCGA-PE-A5DD-01 19 51201173 51201173 G C SHANK1 Silent p.V596V 0.34 TCGA-PE-A5DD-01 1 14105230 14105230 G A PRDM2 Missense_Mutation p.E314K 0.21 probably_damaging(0.971) TCGA-PE-A5DD-01 1 155290290 155290290 G A FDPS Missense_Mutation p.E384K 0.35 deleterious(0.01) possibly_damaging(0.583) TCGA-PE-A5DD-01 1 161160271 161160271 C A ADAMTS4 3'UTR 0.16 TCGA-PE-A5DD-01 1 161336022 161336023 - GAT C1orf192 In_Frame_Ins p.D45_R46insH 0.39 TCGA-PE-A5DD-01 1 175332859 175332861 ATG - TNR In_Frame_Del p.S897del 0.25 TCGA-PE-A5DD-01 1 237167651 237167651 C T MT1HL1 Missense_Mutation p.A8T 0.28 tolerated(0.57) unknown(0) TCGA-PE-A5DD-01 1 24022831 24022831 C T RPL11 Intron 0.56 TCGA-PE-A5DD-01 1 248458379 248458379 C T OR2T12 Missense_Mutation p.G168S 0.25 tolerated(0.37) benign(0.01) TCGA-PE-A5DD-01 1 26528990 26528990 C G CATSPER4 Missense_Mutation p.S459C 0.57 deleterious(0) possibly_damaging(0.789) TCGA-PE-A5DD-01 1 28975227 28975227 C A RNU11 RNA 0.51 TCGA-PE-A5DD-01 1 35658706 35658706 G T SFPQ 5'UTR 0.48 TCGA-PE-A5DD-01 1 43218275 43218275 G A LEPRE1 Missense_Mutation p.S469F 0.40 deleterious(0) probably_damaging(0.983) TCGA-PE-A5DD-01 1 45279094 45279094 G A BTBD19 Missense_Mutation p.E222K 0.39 tolerated(0.06) benign(0.119) TCGA-PE-A5DD-01 20 17207983 17207983 G A PCSK2 Silent p.A11A 0.53 TCGA-PE-A5DD-01 20 3673774 3673774 C T SIGLEC1 Silent p.A1171A 0.30 TCGA-PE-A5DD-01 20 45130540 45130540 G T ZNF334 Missense_Mutation p.Q480K 0.35 deleterious(0.05) benign(0.01) TCGA-PE-A5DD-01 20 58349311 58349311 G A PHACTR3 Missense_Mutation p.E314K 0.39 tolerated(0.06) benign(0.16) TCGA-PE-A5DD-01 21 10907021 10907021 C T TPTE Missense_Mutation p.E514K 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-PE-A5DD-01 22 22664218 22664218 G T BMS1P20 RNA 0.17 TCGA-PE-A5DD-01 22 41795075 41795075 G C TEF 3'UTR 0.62 TCGA-PE-A5DD-01 2 166451641 166451641 G A CSRNP3 Silent p.R22R 0.06 TCGA-PE-A5DD-01 2 168099266 168099266 C T XIRP2 Missense_Mutation p.P455L 0.36 probably_damaging(1) TCGA-PE-A5DD-01 2 32718729 32718729 T A BIRC6 Silent p.T2821T 0.27 TCGA-PE-A5DD-01 2 90139522 90139522 G T IGKV1D-16 Missense_Mutation p.S98I 0.43 deleterious(0.01) possibly_damaging(0.463) TCGA-PE-A5DD-01 3 113378576 113378577 AG - KIAA2018 Frame_Shift_Del p.T651Ifs*81 0.22 TCGA-PE-A5DD-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.55 tolerated(0.11) possibly_damaging(0.529) TCGA-PE-A5DD-01 3 186281917 186281917 C A TBCCD1 Missense_Mutation p.A68S 0.47 tolerated(0.45) benign(0.004) TCGA-PE-A5DD-01 3 186964930 186964930 C G MASP1 Intron 0.21 TCGA-PE-A5DD-01 3 186965056 186965056 C T MASP1 Intron 0.25 TCGA-PE-A5DD-01 3 195477775 195477775 G T MUC4 Missense_Mutation p.R5286S 0.28 benign(0.111) TCGA-PE-A5DD-01 3 45127113 45127113 G A CDCP1 3'UTR 0.46 TCGA-PE-A5DD-01 3 56468948 56468948 G A ERC2 Nonsense_Mutation p.R30* 0.36 TCGA-PE-A5DD-01 4 122607522 122607522 G A ANXA5 Silent p.L5L 0.44 TCGA-PE-A5DD-01 4 40818214 40818214 C A APBB2 Silent p.P725P 0.38 TCGA-PE-A5DD-01 5 179280201 179280201 C T C5orf45 Intron 0.25 TCGA-PE-A5DD-01 5 37371053 37371053 C T NUP155 Silent p.A9A 0.25 TCGA-PE-A5DD-01 6 128319942 128319942 T C PTPRK Missense_Mutation p.I868V 0.10 tolerated(0.6) possibly_damaging(0.468) TCGA-PE-A5DD-01 6 75822985 75822985 C T COL12A1 Missense_Mutation p.E2629K 0.37 possibly_damaging(0.54) TCGA-PE-A5DD-01 6 76124553 76124553 C T FILIP1 Missense_Mutation p.E46K 0.35 tolerated(0.09) possibly_damaging(0.733) TCGA-PE-A5DD-01 6 83076219 83076221 CTT - TPBG 3'UTR 0.12 TCGA-PE-A5DD-01 7 120969357 120969357 C T WNT16 Missense_Mutation p.A4V 0.40 tolerated_low_confidence(0.2) possibly_damaging(0.499) TCGA-PE-A5DD-01 7 140246714 140246714 C T DENND2A Missense_Mutation p.R688Q 0.31 deleterious(0) probably_damaging(1) TCGA-PE-A5DD-01 8 11637157 11637157 G C NEIL2 Silent p.G63G 0.07 TCGA-PE-A5DD-01 8 144519903 144519903 C T ZC3H3 3'UTR 0.32 TCGA-PE-A5DD-01 8 23560250 23560250 C T NKX2-6 Missense_Mutation p.R207Q 0.39 deleterious(0) possibly_damaging(0.895) TCGA-PE-A5DD-01 8 8234883 8234883 C T SGK223 Missense_Mutation p.G346S 0.13 benign(0.002) TCGA-PE-A5DD-01 9 106892034 106892034 C G SMC2 Missense_Mutation p.Q967E 0.08 tolerated(0.08) benign(0.001) TCGA-PE-A5DD-01 9 116359916 116359916 G A RGS3 3'UTR 0.33 TCGA-PE-A5DD-01 9 8317504 8317504 C G PTPRD 3'UTR 0.25 TCGA-PE-A5DD-01 X 108887156 108887156 T C ACSL4 3'UTR 0.28 TCGA-PE-A5DD-01 X 118724234 118724234 T C NKRF Missense_Mutation p.H400R 0.15 tolerated(0.1) possibly_damaging(0.7) TCGA-PE-A5DD-01 X 12516808 12516808 G A FRMPD4 Silent p.T17T 0.28 TCGA-PE-A5DD-01 X 151870431 151870431 G A MAGEA6 3'UTR 0.21 TCGA-PE-A5DD-01 X 151935046 151935046 C T MAGEA3 3'UTR 0.09 TCGA-PE-A5DD-01 X 34961515 34961515 G A FAM47B Silent p.P189P 0.15 TCGA-PE-A5DD-01 X 5947387 5947387 C T NLGN4X Missense_Mutation p.G187S 0.04 deleterious(0) probably_damaging(0.999) TCGA-PE-A5DD-01 X 70321266 70321266 C G FOXO4 Missense_Mutation p.L396V 0.40 tolerated(0.34) possibly_damaging(0.81) TCGA-PE-A5DD-01 X 70462162 70462162 A - ZMYM3 Frame_Shift_Del p.F1220Lfs*34 0.38 TCGA-PE-A5DD-01 X 86087230 86087230 G T DACH2 3'UTR 0.35 TCGA-PE-A5DE-01 10 105108721 105108721 G C PCGF6 Missense_Mutation p.I132M 0.30 deleterious(0) possibly_damaging(0.703) TCGA-PE-A5DE-01 10 105819932 105819932 G C COL17A1 Missense_Mutation p.I362M 0.14 unknown(0) TCGA-PE-A5DE-01 10 111667567 111667567 C T XPNPEP1 Missense_Mutation p.R43K 0.25 tolerated_low_confidence(1) benign(0) TCGA-PE-A5DE-01 10 118435994 118435994 A T HSPA12A Missense_Mutation p.S436T 0.29 tolerated(0.07) possibly_damaging(0.493) TCGA-PE-A5DE-01 10 123279672 123279672 G A FGFR2 Missense_Mutation p.H254Y 0.19 deleterious(0.03) possibly_damaging(0.519) TCGA-PE-A5DE-01 10 125521468 125521468 C T CPXM2 Missense_Mutation p.R566Q 0.12 tolerated(0.3) benign(0.271) TCGA-PE-A5DE-01 10 127541804 127541804 C G BCCIP Missense_Mutation p.L321V 0.36 unknown(0) TCGA-PE-A5DE-01 10 135205096 135205096 C G PAOX 3'UTR 0.15 TCGA-PE-A5DE-01 10 15145310 15145310 C T RPP38 5'UTR 0.19 TCGA-PE-A5DE-01 10 70179590 70179590 G C DNA2 Silent p.L1005L 0.14 TCGA-PE-A5DE-01 10 74899224 74899224 G C ECD Missense_Mutation p.Q455E 0.16 tolerated(0.65) benign(0.036) TCGA-PE-A5DE-01 10 75277410 75277410 G A USP54 Missense_Mutation p.S925L 0.20 tolerated_low_confidence(0.54) benign(0.015) TCGA-PE-A5DE-01 10 89727345 89727345 C T PTEN 3'UTR 0.20 TCGA-PE-A5DE-01 10 90562643 90562643 G A LIPM 5'UTR 0.10 TCGA-PE-A5DE-01 10 91518585 91518585 G A KIF20B Silent p.Q1502Q 0.13 TCGA-PE-A5DE-01 11 111168268 111168268 C T COLCA1 5'UTR 0.23 TCGA-PE-A5DE-01 11 111945629 111945629 C G C11orf57 5'UTR 0.10 TCGA-PE-A5DE-01 11 116656232 116656232 G A ZNF259 Nonsense_Mutation p.Q235* 0.12 TCGA-PE-A5DE-01 11 116656301 116656301 G C ZNF259 Missense_Mutation p.Q212E 0.07 tolerated(0.52) benign(0.015) TCGA-PE-A5DE-01 11 117209288 117209288 G C CEP164 5'UTR 0.13 TCGA-PE-A5DE-01 11 118405271 118405271 G A TMEM25 Silent p.V359V 0.05 TCGA-PE-A5DE-01 11 118964656 118964656 G A H2AFX 3'UTR 0.19 TCGA-PE-A5DE-01 11 119215632 119215632 C T MFRP Missense_Mutation p.E242K 0.19 tolerated(0.2) possibly_damaging(0.582) TCGA-PE-A5DE-01 11 119227041 119227041 C T USP2 3'UTR 0.05 TCGA-PE-A5DE-01 11 119228759 119228759 C T USP2 Missense_Mutation p.E452K 0.19 tolerated(0.18) possibly_damaging(0.488) TCGA-PE-A5DE-01 11 122931861 122931861 G C HSPA8 Missense_Mutation p.Q58E 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-PE-A5DE-01 11 123624915 123624915 G A OR6X1 Silent p.F104F 0.14 TCGA-PE-A5DE-01 11 124857539 124857539 C T CCDC15 Silent p.L473L 0.13 TCGA-PE-A5DE-01 11 128843971 128843971 G A ARHGAP32 Intron 0.12 TCGA-PE-A5DE-01 11 18048072 18048072 C T TPH1 Silent p.V256V 0.12 TCGA-PE-A5DE-01 11 22396411 22396411 G A SLC17A6 Silent p.V384V 0.13 TCGA-PE-A5DE-01 11 30255395 30255395 G C FSHB 3'UTR 0.30 TCGA-PE-A5DE-01 11 35641376 35641376 C T FJX1 Missense_Mutation p.R398C 0.31 deleterious(0.05) possibly_damaging(0.761) TCGA-PE-A5DE-01 11 44069628 44069628 G C ACCSL Missense_Mutation p.Q14H 0.24 deleterious(0) probably_damaging(0.997) TCGA-PE-A5DE-01 11 4608426 4608426 C T OR52I2 Silent p.F128F 0.15 TCGA-PE-A5DE-01 11 55579224 55579224 C T OR5L1 Silent p.F94F 0.15 TCGA-PE-A5DE-01 11 5686709 5686709 G A TRIM5 Intron 0.15 TCGA-PE-A5DE-01 11 57004110 57004110 G C APLNR Silent p.L123L 0.23 TCGA-PE-A5DE-01 11 60890436 60890436 C T CD5 Missense_Mutation p.A386V 0.14 deleterious(0) possibly_damaging(0.839) TCGA-PE-A5DE-01 11 63681792 63681792 C T RCOR2 Missense_Mutation p.E206K 0.09 tolerated(0.09) benign(0.226) TCGA-PE-A5DE-01 11 6621412 6621412 G A RRP8 Silent p.G445G 0.17 TCGA-PE-A5DE-01 11 84027938 84027938 G A DLG2 Intron 0.16 TCGA-PE-A5DE-01 11 86662326 86662326 G A FZD4 Missense_Mutation p.S491L 0.15 deleterious(0) probably_damaging(0.993) TCGA-PE-A5DE-01 11 93170718 93170718 G C CCDC67 Missense_Mutation p.D550H 0.10 deleterious(0.01) probably_damaging(0.914) TCGA-PE-A5DE-01 12 100492137 100492137 C T UHRF1BP1L Missense_Mutation p.R174K 0.14 tolerated(0.09) benign(0.059) TCGA-PE-A5DE-01 12 101738384 101738384 G C UTP20 Missense_Mutation p.M1487I 0.11 tolerated(0.08) possibly_damaging(0.858) TCGA-PE-A5DE-01 12 109273444 109273444 C A DAO 5'Flank 0.11 TCGA-PE-A5DE-01 12 110224578 110224578 G A TRPV4 Missense_Mutation p.S758F 0.18 deleterious(0) possibly_damaging(0.786) TCGA-PE-A5DE-01 12 122395061 122395061 G A WDR66 Silent p.L539L 0.16 TCGA-PE-A5DE-01 12 122396244 122396244 G A WDR66 Silent p.E599E 0.11 TCGA-PE-A5DE-01 12 123001881 123001881 C T RSRC2 Silent p.S165S 0.12 TCGA-PE-A5DE-01 12 123900062 123900062 C T RILPL2 3'UTR 0.22 TCGA-PE-A5DE-01 12 124809329 124809329 G A NCOR2 3'UTR 0.09 TCGA-PE-A5DE-01 12 12870831 12870831 C T CDKN1B Nonsense_Mutation p.Q20* 0.12 TCGA-PE-A5DE-01 12 12871194 12871194 C T CDKN1B Nonsense_Mutation p.Q141* 0.19 TCGA-PE-A5DE-01 12 132593311 132593311 G A EP400NL 3'UTR 0.17 TCGA-PE-A5DE-01 12 29812815 29812815 C T TMTC1 Intron 0.17 TCGA-PE-A5DE-01 12 3407426 3407426 C T RP5-1063M23.1 Intron 0.26 TCGA-PE-A5DE-01 12 4410629 4410629 G C CCND2 3'UTR 0.14 TCGA-PE-A5DE-01 12 46240703 46240703 G A ARID2 Silent p.E521E 0.11 TCGA-PE-A5DE-01 12 49425412 49425412 G A KMT2D Missense_Mutation p.S4359L 0.11 unknown(0) TCGA-PE-A5DE-01 12 49523124 49523124 G A TUBA1B Silent p.L92L 0.18 TCGA-PE-A5DE-01 12 49523127 49523127 C T TUBA1B Silent p.Q91Q 0.18 TCGA-PE-A5DE-01 12 50295026 50295026 G A FAIM2 Missense_Mutation p.S33L 0.12 tolerated(0.14) benign(0.007) TCGA-PE-A5DE-01 12 50295242 50295242 G C FAIM2 Intron 0.14 TCGA-PE-A5DE-01 12 50498439 50498439 G A GPD1 Missense_Mutation p.E42K 0.12 deleterious(0.01) probably_damaging(0.955) TCGA-PE-A5DE-01 12 57987892 57987892 C T PIP4K2C Missense_Mutation p.H87Y 0.17 deleterious(0.02) benign(0.375) TCGA-PE-A5DE-01 12 58129195 58129195 C G AGAP2 Missense_Mutation p.S395T 0.17 deleterious(0) possibly_damaging(0.597) TCGA-PE-A5DE-01 12 5860133 5860133 C G ANO2 Missense_Mutation p.K349N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-PE-A5DE-01 12 62784666 62784666 G A USP15 Missense_Mutation p.E623K 0.17 tolerated(0.49) benign(0.016) TCGA-PE-A5DE-01 12 65113890 65113890 C T GNS Missense_Mutation p.E498K 0.11 tolerated(0.7) benign(0.017) TCGA-PE-A5DE-01 12 71054753 71054753 G A PTPRR Missense_Mutation p.S578F 0.15 tolerated(0.08) benign(0.039) TCGA-PE-A5DE-01 12 80712466 80712466 C G OTOGL Missense_Mutation p.P1250A 0.12 tolerated(0.42) probably_damaging(0.999) TCGA-PE-A5DE-01 12 89984095 89984095 G C ATP2B1 3'UTR 0.12 TCGA-PE-A5DE-01 12 98988159 98988159 G A SLC25A3 Intron 0.29 TCGA-PE-A5DE-01 12 99138664 99138664 C T ANKS1B Intron 0.17 TCGA-PE-A5DE-01 13 100616164 100616164 C G ZIC5 3'UTR 0.26 TCGA-PE-A5DE-01 13 101182391 101182391 G A PCCA Missense_Mutation p.E720K 0.12 tolerated(0.36) possibly_damaging(0.901) TCGA-PE-A5DE-01 13 101256391 101256391 C T TMTC4 3'UTR 0.24 TCGA-PE-A5DE-01 13 103331512 103331512 G A TPP2 3'Flank 0.26 TCGA-PE-A5DE-01 13 31232835 31232835 C T USPL1 Missense_Mutation p.S874L 0.16 tolerated(0.09) benign(0.028) TCGA-PE-A5DE-01 13 31233336 31233336 C G USPL1 Missense_Mutation p.S1041C 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-PE-A5DE-01 13 36049917 36049917 G A MAB21L1 Missense_Mutation p.S120F 0.14 deleterious(0.01) probably_damaging(1) TCGA-PE-A5DE-01 13 38145546 38145546 C T POSTN Silent p.L713L 0.15 TCGA-PE-A5DE-01 13 38320505 38320505 C T TRPC4 Missense_Mutation p.E156K 0.11 deleterious(0) possibly_damaging(0.746) TCGA-PE-A5DE-01 13 49924959 49924959 G C CAB39L Missense_Mutation p.S162C 0.07 deleterious(0) probably_damaging(0.993) TCGA-PE-A5DE-01 13 50590926 50590926 G A TRIM13 3'Flank 0.11 TCGA-PE-A5DE-01 13 52531744 52531744 C G ATP7B Splice_Site p.X786_splice 0.11 TCGA-PE-A5DE-01 13 75930355 75930355 G A TBC1D4 Silent p.I401I 0.14 TCGA-PE-A5DE-01 13 78218433 78218433 G A SCEL 3'UTR 0.09 TCGA-PE-A5DE-01 13 84453559 84453559 G A SLITRK1 Missense_Mutation p.S695L 0.14 deleterious_low_confidence(0) benign(0.191) TCGA-PE-A5DE-01 14 101347054 101347054 C T RTL1 Missense_Mutation p.D1358N 0.05 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-PE-A5DE-01 14 103395842 103395842 C T AMN Silent p.L243L 0.24 TCGA-PE-A5DE-01 14 103452869 103452869 G C CDC42BPB Silent p.R215R 0.32 TCGA-PE-A5DE-01 14 104027051 104027051 G A BAG5 Missense_Mutation p.H192Y 0.14 deleterious_low_confidence(0) benign(0.009) TCGA-PE-A5DE-01 14 105355912 105355912 C T CEP170B Intron 0.15 TCGA-PE-A5DE-01 14 20824559 20824559 G A PARP2 Missense_Mutation p.E412K 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-PE-A5DE-01 14 23503963 23503963 G A PSMB5 Missense_Mutation p.A43V 0.07 tolerated(0.45) benign(0.042) TCGA-PE-A5DE-01 14 23607216 23607216 G C SLC7A8 Silent p.L310L 0.21 TCGA-PE-A5DE-01 14 45564611 45564611 G C PRPF39 Missense_Mutation p.E57Q 0.17 tolerated(0.15) benign(0.021) TCGA-PE-A5DE-01 14 47324259 47324259 G A MDGA2 Missense_Mutation p.H951Y 0.12 tolerated(1) benign(0.131) TCGA-PE-A5DE-01 14 52471973 52471973 C T NID2 3'UTR 0.10 TCGA-PE-A5DE-01 14 58934473 58934473 G A KIAA0586 Missense_Mutation p.D812N 0.14 tolerated(0.46) probably_damaging(0.982) TCGA-PE-A5DE-01 14 66958842 66958842 G A LINC00238 RNA 0.15 TCGA-PE-A5DE-01 14 72176044 72176044 G A SIPA1L1 Missense_Mutation p.E1312K 0.09 deleterious(0.01) benign(0.16) TCGA-PE-A5DE-01 14 72961968 72961968 G A RGS6 Missense_Mutation p.M321I 0.13 tolerated(0.54) benign(0) TCGA-PE-A5DE-01 14 74035928 74035928 G C ACOT2 5'UTR 0.16 TCGA-PE-A5DE-01 14 75128028 75128028 C T AREL1 3'UTR 0.14 TCGA-PE-A5DE-01 14 75265994 75265994 C T YLPM1 Missense_Mutation p.P1332S 0.14 probably_damaging(0.994) TCGA-PE-A5DE-01 14 77492728 77492728 C G IRF2BPL Missense_Mutation p.D470H 0.13 deleterious(0) unknown(0) TCGA-PE-A5DE-01 14 77920443 77920443 C T VIPAS39 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-PE-A5DE-01 14 78140451 78140451 C T ALKBH1 Missense_Mutation p.V292I 0.24 tolerated(1) benign(0.022) TCGA-PE-A5DE-01 14 78365553 78365553 G T ADCK1 Missense_Mutation p.R231S 0.16 deleterious(0.04) benign(0.042) TCGA-PE-A5DE-01 14 92403440 92403440 C T FBLN5 Missense_Mutation p.R77Q 0.10 tolerated(0.59) possibly_damaging(0.716) TCGA-PE-A5DE-01 14 95903285 95903285 C T SYNE3 Missense_Mutation p.E804K 0.12 tolerated(0.2) benign(0.009) TCGA-PE-A5DE-01 14 99182494 99182494 G A C14orf177 5'UTR 0.22 TCGA-PE-A5DE-01 15 29488713 29488713 G A FAM189A1 Missense_Mutation p.S148F 0.20 deleterious(0) probably_damaging(0.951) TCGA-PE-A5DE-01 15 40590496 40590496 C A PLCB2 Missense_Mutation p.W361C 0.17 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 15 41023451 41023451 C G RAD51 3'UTR 0.18 TCGA-PE-A5DE-01 15 43236436 43236436 C A UBR1 3'UTR 0.11 TCGA-PE-A5DE-01 15 44106742 44106742 C T MFAP1 Missense_Mutation p.E192K 0.18 deleterious(0.01) possibly_damaging(0.621) TCGA-PE-A5DE-01 15 44106757 44106757 C G MFAP1 Missense_Mutation p.E187Q 0.18 deleterious(0.02) possibly_damaging(0.728) TCGA-PE-A5DE-01 15 44865871 44865871 G A SPG11 Nonsense_Mutation p.Q2027* 0.10 TCGA-PE-A5DE-01 15 45386382 45386382 C T DUOX2 Missense_Mutation p.R1538Q 0.12 tolerated(1) benign(0.002) TCGA-PE-A5DE-01 15 45444113 45444113 G A DUOX1 Missense_Mutation p.R1019Q 0.11 tolerated(0.29) benign(0.014) TCGA-PE-A5DE-01 15 45783004 45783004 C G SLC30A4 Missense_Mutation p.R205T 0.12 deleterious(0) probably_damaging(0.911) TCGA-PE-A5DE-01 15 55710686 55710686 G C C15orf65 Missense_Mutation p.G95A 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-PE-A5DE-01 15 55722912 55722912 C T DYX1C1 Missense_Mutation p.E407K 0.12 tolerated(0.06) benign(0.039) TCGA-PE-A5DE-01 15 62274718 62274718 C G VPS13C Missense_Mutation p.E657Q 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-PE-A5DE-01 15 66781598 66781598 G C MAP2K1 Missense_Mutation p.D336H 0.16 deleterious(0.03) possibly_damaging(0.89) TCGA-PE-A5DE-01 15 69561135 69561135 C T GLCE Missense_Mutation p.S469L 0.07 deleterious(0) benign(0.257) TCGA-PE-A5DE-01 15 75130517 75130517 C T ULK3 Silent p.R421R 0.08 TCGA-PE-A5DE-01 15 79382571 79382571 C G RASGRF1 Missense_Mutation p.E90D 0.16 tolerated(0.57) benign(0.003) TCGA-PE-A5DE-01 15 83502372 83502372 G A WHAMM 3'UTR 0.10 TCGA-PE-A5DE-01 15 85488526 85488526 G T SLC28A1 3'UTR 0.29 TCGA-PE-A5DE-01 15 86064806 86064806 G C AKAP13 Missense_Mutation p.G61R 0.18 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 15 87097660 87097660 G A AGBL1 Silent p.E916E 0.13 TCGA-PE-A5DE-01 15 88690592 88690592 G A NTRK3 Silent p.L146L 0.25 TCGA-PE-A5DE-01 16 10273974 10273974 C T GRIN2A Missense_Mutation p.V99M 0.13 deleterious(0) probably_damaging(0.938) TCGA-PE-A5DE-01 16 10626089 10626089 G C EMP2 3'UTR 0.12 TCGA-PE-A5DE-01 16 1400943 1400943 C T TSR3 Missense_Mutation p.E131K 0.10 deleterious(0.01) benign(0.305) TCGA-PE-A5DE-01 16 1417763 1417763 G C UNKL Missense_Mutation p.S558W 0.11 tolerated(0.16) possibly_damaging(0.752) TCGA-PE-A5DE-01 16 15127212 15127212 G A PDXDC1 Missense_Mutation p.E590K 0.16 tolerated(0.21) possibly_damaging(0.49) TCGA-PE-A5DE-01 16 19871180 19871180 C T GPRC5B 3'UTR 0.11 TCGA-PE-A5DE-01 16 2004125 2004125 G A RPL3L Missense_Mutation p.R10W 0.20 deleterious(0) probably_damaging(0.993) TCGA-PE-A5DE-01 16 30456500 30456500 C G SEPHS2 Missense_Mutation p.M183I 0.17 possibly_damaging(0.474) TCGA-PE-A5DE-01 16 30537313 30537313 C A ZNF768 Nonsense_Mutation p.E50* 0.13 TCGA-PE-A5DE-01 16 30794650 30794650 C T ZNF629 Silent p.L333L 0.08 TCGA-PE-A5DE-01 16 3535782 3535782 G C NAA60 3'UTR 0.19 TCGA-PE-A5DE-01 16 4322736 4322736 G C TFAP4 Missense_Mutation p.F4L 0.13 tolerated_low_confidence(0.24) benign(0.051) TCGA-PE-A5DE-01 16 449629 449629 C T NME4 Silent p.V110V 0.18 TCGA-PE-A5DE-01 16 4642315 4642315 C G C16orf96 Missense_Mutation p.F907L 0.06 deleterious(0.05) benign(0.294) TCGA-PE-A5DE-01 16 58035305 58035305 G A USB1 5'UTR 0.24 TCGA-PE-A5DE-01 16 68845587 68845587 G T CDH1 Missense_Mutation p.G278V 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-PE-A5DE-01 16 70508500 70508500 G A FUK Silent p.V686V 0.18 TCGA-PE-A5DE-01 16 70595530 70595530 C G SF3B3 Intron 0.09 TCGA-PE-A5DE-01 16 71682288 71682288 G A PHLPP2 3'UTR 0.17 TCGA-PE-A5DE-01 16 71823276 71823276 G A AP1G1 Missense_Mutation p.S36L 0.08 deleterious(0.01) benign(0.349) TCGA-PE-A5DE-01 16 732207 732207 G C STUB1 Missense_Mutation p.E238Q 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-PE-A5DE-01 16 74338264 74338264 G A PSMD7 Missense_Mutation p.E168K 0.14 deleterious(0.04) probably_damaging(0.92) TCGA-PE-A5DE-01 16 777579 777579 G C HAGHL Missense_Mutation p.E24Q 0.15 tolerated(0.15) benign(0.067) TCGA-PE-A5DE-01 16 790083 790083 C T NARFL Intron 0.09 TCGA-PE-A5DE-01 16 81934351 81934351 C T PLCG2 Missense_Mutation p.S443L 0.10 deleterious(0) possibly_damaging(0.849) TCGA-PE-A5DE-01 16 8722662 8722662 G C METTL22 Missense_Mutation p.R70T 0.08 tolerated(0.2) benign(0.005) TCGA-PE-A5DE-01 16 8722830 8722830 G C METTL22 Missense_Mutation p.R126T 0.15 deleterious(0) probably_damaging(0.99) TCGA-PE-A5DE-01 16 88747983 88747983 G C SNAI3 Silent p.L72L 0.27 TCGA-PE-A5DE-01 16 88748011 88748011 G C SNAI3 Missense_Mutation p.S63W 0.36 deleterious(0.01) possibly_damaging(0.854) TCGA-PE-A5DE-01 17 10355546 10355546 G A MYH4 Silent p.I1150I 0.13 TCGA-PE-A5DE-01 17 10366184 10366184 C T MYH4 Missense_Mutation p.D336N 0.16 deleterious(0) probably_damaging(0.939) TCGA-PE-A5DE-01 17 16326933 16326933 C G TRPV2 Nonsense_Mutation p.S259* 0.16 TCGA-PE-A5DE-01 17 17250283 17250283 C T NT5M 3'UTR 0.12 TCGA-PE-A5DE-01 17 26966443 26966443 C G KIAA0100 Silent p.L373L 0.23 TCGA-PE-A5DE-01 17 27401804 27401804 G A MYO18A Missense_Mutation p.T2050M 0.14 tolerated_low_confidence(0.14) benign(0) TCGA-PE-A5DE-01 17 29704402 29704402 C T NF1 3'UTR 0.11 TCGA-PE-A5DE-01 17 3416581 3416581 G C TRPV3 3'UTR 0.11 TCGA-PE-A5DE-01 17 3416625 3416625 G T TRPV3 3'UTR 0.21 TCGA-PE-A5DE-01 17 3416654 3416654 G T TRPV3 3'UTR 0.25 TCGA-PE-A5DE-01 17 34236292 34236292 C T AC015849.16 RNA 0.15 TCGA-PE-A5DE-01 17 36485104 36485104 C T GPR179 Missense_Mutation p.E1450K 0.15 tolerated(1) benign(0.054) TCGA-PE-A5DE-01 17 37792627 37792627 C T PPP1R1B 3'UTR 0.18 TCGA-PE-A5DE-01 17 38146170 38146170 C T PSMD3 Missense_Mutation p.L289F 0.17 tolerated(0.05) benign(0.082) TCGA-PE-A5DE-01 17 38325886 38325886 G A CASC3 3'UTR 0.18 TCGA-PE-A5DE-01 17 38911249 38911249 G C KRT25 Missense_Mutation p.S92C 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-PE-A5DE-01 17 39645670 39645670 A G KRT36 Silent p.D149D 0.12 TCGA-PE-A5DE-01 17 40275312 40275312 G T HSPB9 Silent p.G148G 0.23 TCGA-PE-A5DE-01 17 41234523 41234523 C T BRCA1 Missense_Mutation p.E1419K 0.15 deleterious(0) probably_damaging(0.956) TCGA-PE-A5DE-01 17 44116048 44116048 C T KANSL1 Silent p.L799L 0.15 TCGA-PE-A5DE-01 17 44116427 44116427 C T KANSL1 Missense_Mutation p.M786I 0.12 deleterious(0.03) benign(0.045) TCGA-PE-A5DE-01 17 46620887 46620887 C A HOXB2 Missense_Mutation p.R205L 0.15 deleterious(0.01) benign(0.406) TCGA-PE-A5DE-01 17 4837881 4837881 G A GP1BA 3'UTR 0.20 TCGA-PE-A5DE-01 17 5012814 5012814 C T ZNF232 Missense_Mutation p.E125K 0.19 deleterious(0) possibly_damaging(0.486) TCGA-PE-A5DE-01 17 5461801 5461801 C T NLRP1 Missense_Mutation p.E739K 0.19 deleterious(0.04) benign(0.001) TCGA-PE-A5DE-01 17 5487160 5487160 C T NLRP1 Missense_Mutation p.E40K 0.12 tolerated(0.76) benign(0.248) TCGA-PE-A5DE-01 17 58156227 58156227 C T HEATR6 Missense_Mutation p.E17K 0.24 tolerated_low_confidence(0.25) benign(0.033) TCGA-PE-A5DE-01 17 72436761 72436761 C T GPRC5C Silent p.I327I 0.20 TCGA-PE-A5DE-01 17 74303563 74303563 C T QRICH2 Missense_Mutation p.E7K 0.11 tolerated_low_confidence(0.17) benign(0.002) TCGA-PE-A5DE-01 17 74733140 74733140 C G SRSF2 Missense_Mutation p.E35Q 0.17 tolerated(0.23) possibly_damaging(0.667) TCGA-PE-A5DE-01 17 74733240 74733240 C G SRSF2 Translation_Start_Site p.M1? 0.16 deleterious(0) possibly_damaging(0.718) TCGA-PE-A5DE-01 17 7483208 7483208 G A CD68 Missense_Mutation p.E44K 0.12 tolerated(0.11) benign(0.012) TCGA-PE-A5DE-01 17 75471938 75471938 A G SEPT9 Intron 0.14 TCGA-PE-A5DE-01 17 7578423 7578423 C T TP53 Missense_Mutation p.M169I 0.25 tolerated(0.12) benign(0.056) TCGA-PE-A5DE-01 17 78306126 78306126 C T RNF213 Nonsense_Mutation p.Q1280* 0.26 TCGA-PE-A5DE-01 17 78441946 78441946 C G NPTX1 3'UTR 0.18 TCGA-PE-A5DE-01 17 79661856 79661856 G A HGS Silent p.A316A 0.18 TCGA-PE-A5DE-01 17 80041706 80041706 G A FASN Silent p.F1720F 0.23 TCGA-PE-A5DE-01 17 8012650 8012650 G A ALOXE3 Silent p.I600I 0.21 TCGA-PE-A5DE-01 17 8193159 8193159 G A RANGRF Missense_Mutation p.E156K 0.24 tolerated(0.83) benign(0.154) TCGA-PE-A5DE-01 17 8395802 8395802 G C MYH10 Missense_Mutation p.S1495C 0.10 probably_damaging(0.999) TCGA-PE-A5DE-01 18 23907075 23907075 G A TAF4B Missense_Mutation p.E744K 0.17 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 18 31324429 31324429 C T ASXL3 Silent p.F1539F 0.07 TCGA-PE-A5DE-01 18 44560603 44560603 C T TCEB3B Missense_Mutation p.E345K 0.10 tolerated(1) benign(0) TCGA-PE-A5DE-01 18 47810867 47810867 C T CXXC1 Silent p.E366E 0.17 TCGA-PE-A5DE-01 18 51057517 51057517 G A DCC 3'UTR 0.29 TCGA-PE-A5DE-01 18 55020017 55020017 G C ST8SIA3 5'UTR 0.25 TCGA-PE-A5DE-01 18 55269589 55269589 G A NARS Nonsense_Mutation p.Q505* 0.26 TCGA-PE-A5DE-01 18 77227491 77227491 G C NFATC1 Missense_Mutation p.R654S 0.10 tolerated(0.23) probably_damaging(0.997) TCGA-PE-A5DE-01 19 10887807 10887807 C T DNM2 Silent p.I201I 0.16 TCGA-PE-A5DE-01 19 1119982 1119982 G C SBNO2 Missense_Mutation p.S397C 0.12 deleterious(0.01) benign(0.078) TCGA-PE-A5DE-01 19 11287291 11287291 C T KANK2 Missense_Mutation p.E583K 0.24 tolerated(0.09) benign(0.003) TCGA-PE-A5DE-01 19 11725353 11725353 C T ZNF627 Silent p.A5A 0.09 TCGA-PE-A5DE-01 19 11728434 11728434 C T ZNF627 Silent p.F372F 0.09 TCGA-PE-A5DE-01 19 13941978 13941978 G A ZSWIM4 3'UTR 0.15 TCGA-PE-A5DE-01 19 14166025 14166025 C T PALM3 Silent p.L138L 0.09 TCGA-PE-A5DE-01 19 16197249 16197249 G C TPM4 Missense_Mutation p.E131Q 0.07 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 19 16197306 16197306 G C TPM4 Missense_Mutation p.E150Q 0.05 deleterious(0.02) probably_damaging(1) TCGA-PE-A5DE-01 19 16791268 16791268 G T TMEM38A Silent p.V114V 0.16 TCGA-PE-A5DE-01 19 16902356 16902356 G C NWD1 Missense_Mutation p.E1046Q 0.11 tolerated(0.08) possibly_damaging(0.848) TCGA-PE-A5DE-01 19 17008550 17008550 C A CPAMD8 Missense_Mutation p.A1720S 0.27 tolerated_low_confidence(0.13) benign(0.015) TCGA-PE-A5DE-01 19 3011063 3011063 G A TLE2 Silent p.L323L 0.13 TCGA-PE-A5DE-01 19 30303566 30303566 C T CCNE1 Intron 0.16 TCGA-PE-A5DE-01 19 33699786 33699786 C G SLC7A10 3'UTR 0.18 TCGA-PE-A5DE-01 19 33700211 33700211 C T SLC7A10 Intron 0.11 TCGA-PE-A5DE-01 19 35449130 35449130 G C ZNF792 Missense_Mutation p.F543L 0.14 deleterious(0) probably_damaging(0.995) TCGA-PE-A5DE-01 19 36353838 36353838 C G KIRREL2 Missense_Mutation p.S542C 0.17 tolerated(0.07) benign(0.025) TCGA-PE-A5DE-01 19 36515468 36515468 C T CLIP3 Missense_Mutation p.E250K 0.18 deleterious(0.01) benign(0.257) TCGA-PE-A5DE-01 19 39660268 39660268 C T PAK4 Silent p.F25F 0.15 TCGA-PE-A5DE-01 19 40316079 40316079 G A DYRK1B 3'UTR 0.19 TCGA-PE-A5DE-01 19 40928882 40928882 G A SERTAD1 Missense_Mutation p.S191F 0.14 deleterious(0.02) benign(0.259) TCGA-PE-A5DE-01 19 41105378 41105378 G A LTBP4 Missense_Mutation p.R86Q 0.12 tolerated_low_confidence(0.45) benign(0.004) TCGA-PE-A5DE-01 19 41522579 41522579 C T CYP2B6 Silent p.I441I 0.13 TCGA-PE-A5DE-01 19 42933115 42933115 C T CXCL17 Missense_Mutation p.R94K 0.18 tolerated(0.22) benign(0.069) TCGA-PE-A5DE-01 19 44988574 44988574 G T ZNF180 Missense_Mutation p.Q69K 0.12 deleterious(0.03) benign(0.011) TCGA-PE-A5DE-01 19 45910351 45910351 G A CD3EAP Splice_Site p.X8_splice 0.06 TCGA-PE-A5DE-01 19 46214964 46214964 G A FBXO46 Missense_Mutation p.A597V 0.18 tolerated_low_confidence(0.16) unknown(0) TCGA-PE-A5DE-01 19 46283050 46283050 C T DMPK Missense_Mutation p.G90R 0.11 deleterious(0) probably_damaging(0.999) TCGA-PE-A5DE-01 19 46375436 46375436 C G FOXA3 Missense_Mutation p.S58C 0.18 deleterious(0.04) unknown(0) TCGA-PE-A5DE-01 19 49494595 49494595 C T GYS1 Silent p.K88K 0.18 TCGA-PE-A5DE-01 19 49494640 49494640 C T GYS1 Silent p.V73V 0.17 TCGA-PE-A5DE-01 19 50321680 50321680 C G MED25 Missense_Mutation p.L28V 0.18 tolerated(0.07) probably_damaging(0.973) TCGA-PE-A5DE-01 19 50335408 50335408 G A MED25 Silent p.Q456Q 0.12 TCGA-PE-A5DE-01 19 52096169 52096169 G C AC018755.1 Missense_Mutation p.S170C 0.12 possibly_damaging(0.843) TCGA-PE-A5DE-01 19 52329001 52329001 G C FPR3 3'UTR 0.20 TCGA-PE-A5DE-01 19 52394623 52394623 G C ZNF649 Missense_Mutation p.H256D 0.11 deleterious(0) probably_damaging(0.959) TCGA-PE-A5DE-01 19 53994951 53994951 C T ZNF813 Missense_Mutation p.H489Y 0.19 deleterious(0.02) benign(0.301) TCGA-PE-A5DE-01 19 55944282 55944282 G A SHISA7 3'UTR 0.14 TCGA-PE-A5DE-01 19 56688525 56688525 G A GALP Silent p.L16L 0.12 TCGA-PE-A5DE-01 19 57835121 57835121 G A ZNF543 Silent p.Q30Q 0.14 TCGA-PE-A5DE-01 19 57840193 57840193 G A ZNF543 Missense_Mutation p.E455K 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-PE-A5DE-01 19 6732543 6732543 G C GPR108 Missense_Mutation p.I317M 0.11 deleterious(0) probably_damaging(0.968) TCGA-PE-A5DE-01 19 7681485 7681485 C G CAMSAP3 Silent p.L1090L 0.28 TCGA-PE-A5DE-01 19 8468503 8468503 C G RAB11B 3'UTR 0.13 TCGA-PE-A5DE-01 19 881682 881682 G A MED16 Missense_Mutation p.R340W 0.15 deleterious(0) possibly_damaging(0.869) TCGA-PE-A5DE-01 19 9033260 9033260 G A MUC16 Silent p.L12122L 0.15 TCGA-PE-A5DE-01 1 108766295 108766295 C G NBPF4 3'UTR 0.10 TCGA-PE-A5DE-01 1 109197412 109197412 G A HENMT1 Silent p.I108I 0.21 TCGA-PE-A5DE-01 1 109794721 109794721 G C CELSR2 Missense_Mutation p.D674H 0.16 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 1 109795780 109795780 G C CELSR2 Missense_Mutation p.E1027Q 0.18 tolerated(1) benign(0.061) TCGA-PE-A5DE-01 1 115262273 115262273 C T CSDE1 Missense_Mutation p.D761N 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-PE-A5DE-01 1 120457861 120457861 G A NOTCH2 3'UTR 0.12 TCGA-PE-A5DE-01 1 120469211 120469211 C T NOTCH2 Missense_Mutation p.D1306N 0.17 tolerated(0.66) probably_damaging(0.998) TCGA-PE-A5DE-01 1 12428617 12428617 C T VPS13D Missense_Mutation p.P3515S 0.10 probably_damaging(0.996) TCGA-PE-A5DE-01 1 12919561 12919561 C G PRAMEF2 Missense_Mutation p.Q101E 0.07 deleterious(0.02) benign(0.422) TCGA-PE-A5DE-01 1 150482227 150482227 G A ECM1 Missense_Mutation p.G71E 0.09 tolerated_low_confidence(0.34) benign(0.034) TCGA-PE-A5DE-01 1 150620278 150620278 G T GOLPH3L 3'UTR 0.22 TCGA-PE-A5DE-01 1 151149350 151149350 G A VPS72 Missense_Mutation p.R300C 0.09 deleterious(0) possibly_damaging(0.836) TCGA-PE-A5DE-01 1 151196753 151196753 G A PIP5K1A Missense_Mutation p.E40K 0.09 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-PE-A5DE-01 1 151339255 151339255 C T SELENBP1 Missense_Mutation p.E203K 0.08 deleterious(0.01) possibly_damaging(0.697) TCGA-PE-A5DE-01 1 151378773 151378773 G C POGZ Nonsense_Mutation p.S913* 0.09 TCGA-PE-A5DE-01 1 152382107 152382107 C T CRNN Missense_Mutation p.R484K 0.08 tolerated(0.79) benign(0.003) TCGA-PE-A5DE-01 1 152733174 152733174 G A KPRP Silent p.L370L 0.16 TCGA-PE-A5DE-01 1 153028913 153028913 G A SPRR2A 3'UTR 0.08 TCGA-PE-A5DE-01 1 154960718 154960718 C T FLAD1 Silent p.F170F 0.19 TCGA-PE-A5DE-01 1 155289696 155289696 C G FDPS Missense_Mutation p.P346A 0.12 tolerated(0.09) benign(0.012) TCGA-PE-A5DE-01 1 155309133 155309133 C G ASH1L Missense_Mutation p.K2829N 0.09 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-PE-A5DE-01 1 156235970 156235970 G C SMG5 Nonsense_Mutation p.S486* 0.17 TCGA-PE-A5DE-01 1 156737529 156737529 C T PRCC 5'UTR 0.14 TCGA-PE-A5DE-01 1 156737729 156737729 C G PRCC Missense_Mutation p.Q56E 0.14 tolerated_low_confidence(0.13) unknown(0) TCGA-PE-A5DE-01 1 156819150 156819150 G A INSRR Silent p.F444F 0.14 TCGA-PE-A5DE-01 1 157667761 157667761 C A FCRL3 Intron 0.16 TCGA-PE-A5DE-01 1 15807649 15807649 G A CELA2B Silent p.L62L 0.12 TCGA-PE-A5DE-01 1 160183238 160183238 G A PEA15 Missense_Mutation p.E119K 0.23 deleterious(0.04) benign(0.009) TCGA-PE-A5DE-01 1 160342433 160342433 C T NHLH1 3'UTR 0.16 TCGA-PE-A5DE-01 1 16058484 16058484 G A PLEKHM2 Missense_Mutation p.E856K 0.10 tolerated(0.27) benign(0.065) TCGA-PE-A5DE-01 1 160783497 160783497 C G LY9 Missense_Mutation p.L176V 0.15 deleterious(0) probably_damaging(0.999) TCGA-PE-A5DE-01 1 160967447 160967447 C T F11R 3'UTR 0.12 TCGA-PE-A5DE-01 1 166818821 166818821 G C POGK Silent p.L335L 0.08 TCGA-PE-A5DE-01 1 167097333 167097333 G A DUSP27 Missense_Mutation p.D989N 0.23 tolerated(0.16) benign(0.317) TCGA-PE-A5DE-01 1 167190176 167190176 C T POU2F1 Silent p.A14A 0.06 TCGA-PE-A5DE-01 1 167823649 167823649 G A ADCY10 Silent p.L750L 0.08 TCGA-PE-A5DE-01 1 172362601 172362601 G A DNM3 Intron 0.08 TCGA-PE-A5DE-01 1 180000560 180000560 C T CEP350 Missense_Mutation p.S1219F 0.12 possibly_damaging(0.677) TCGA-PE-A5DE-01 1 181701529 181701529 G A CACNA1E Silent p.R769R 0.11 TCGA-PE-A5DE-01 1 184863324 184863324 C G FAM129A Missense_Mutation p.G68A 0.12 tolerated(0.18) benign(0.426) TCGA-PE-A5DE-01 1 19525367 19525367 C T UBR4 Missense_Mutation p.R145K 0.11 benign(0.172) TCGA-PE-A5DE-01 1 197396757 197396757 G A CRB1 Missense_Mutation p.E768K 0.09 deleterious(0.04) probably_damaging(0.988) TCGA-PE-A5DE-01 1 200143378 200143378 G C NR5A2 3'UTR 0.12 TCGA-PE-A5DE-01 1 200816366 200816366 C T CAMSAP2 Missense_Mutation p.H380Y 0.18 tolerated(0.12) benign(0.001) TCGA-PE-A5DE-01 1 201824289 201824289 G C IPO9 Missense_Mutation p.E317Q 0.10 tolerated(0.15) benign(0.014) TCGA-PE-A5DE-01 1 202794688 202794688 C T RP11-480I12.4 Silent p.V18V 0.08 TCGA-PE-A5DE-01 1 204991377 204991377 C G NFASC 3'UTR 0.08 TCGA-PE-A5DE-01 1 205030518 205030518 G A CNTN2 Missense_Mutation p.D315N 0.12 tolerated(0.12) possibly_damaging(0.781) TCGA-PE-A5DE-01 1 208061265 208061265 C T CD34 Missense_Mutation p.E326K 0.09 deleterious(0) benign(0.027) TCGA-PE-A5DE-01 1 208391140 208391140 G A PLXNA2 Missense_Mutation p.S43F 0.08 tolerated(0.44) benign(0.182) TCGA-PE-A5DE-01 1 21097451 21097451 C T HP1BP3 Missense_Mutation p.R209K 0.09 tolerated(0.5) probably_damaging(0.946) TCGA-PE-A5DE-01 1 212141900 212141900 C T INTS7 Missense_Mutation p.M655I 0.14 tolerated(0.49) benign(0.015) TCGA-PE-A5DE-01 1 212788564 212788564 C T ATF3 Silent p.V67V 0.10 TCGA-PE-A5DE-01 1 214170677 214170677 G A PROX1 Missense_Mutation p.E267K 0.18 deleterious(0.02) possibly_damaging(0.543) TCGA-PE-A5DE-01 1 216678982 216678982 G C ESRRG 3'UTR 0.12 TCGA-PE-A5DE-01 1 220771680 220771680 G A MARK1 Missense_Mutation p.R106Q 0.16 deleterious(0) possibly_damaging(0.765) TCGA-PE-A5DE-01 1 226349326 226349326 C G ACBD3 Missense_Mutation p.E212Q 0.07 tolerated(0.05) benign(0.403) TCGA-PE-A5DE-01 1 228494242 228494242 C T OBSCN Silent p.T4900T 0.12 TCGA-PE-A5DE-01 1 228529861 228529861 G A OBSCN Missense_Mutation p.E6983K 0.05 benign(0.238) TCGA-PE-A5DE-01 1 234556513 234556513 G C TARBP1 Missense_Mutation p.L1164V 0.15 deleterious(0.03) benign(0.029) TCGA-PE-A5DE-01 1 240969544 240969544 G A RGS7 Silent p.L389L 0.13 TCGA-PE-A5DE-01 1 242048771 242048771 C G EXO1 Missense_Mutation p.I789M 0.15 deleterious(0.02) possibly_damaging(0.635) TCGA-PE-A5DE-01 1 2435866 2435866 C G PLCH2 3'UTR 0.14 TCGA-PE-A5DE-01 1 247655180 247655180 C T OR2W5 RNA 0.14 TCGA-PE-A5DE-01 1 24792493 24792493 G C NIPAL3 Intron 0.16 TCGA-PE-A5DE-01 1 248202185 248202185 C G OR2L2 Missense_Mutation p.L206V 0.04 deleterious(0.04) possibly_damaging(0.558) TCGA-PE-A5DE-01 1 26511528 26511528 C T CNKSR1 Missense_Mutation p.R387W 0.10 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 1 29037045 29037045 C T GMEB1 Silent p.L304L 0.06 TCGA-PE-A5DE-01 1 32203099 32203099 C T BAI2 Silent p.L970L 0.12 TCGA-PE-A5DE-01 1 35916036 35916036 C T KIAA0319L Missense_Mutation p.D713N 0.22 tolerated(0.05) possibly_damaging(0.695) TCGA-PE-A5DE-01 1 43392841 43392841 G A SLC2A1 Silent p.F450F 0.13 TCGA-PE-A5DE-01 1 45166639 45166639 G C C1orf228 Missense_Mutation p.E163Q 0.07 deleterious(0.03) probably_damaging(0.922) TCGA-PE-A5DE-01 1 45271370 45271370 G C PLK3 3'UTR 0.09 TCGA-PE-A5DE-01 1 46073337 46073337 G C NASP Missense_Mutation p.E252Q 0.14 deleterious_low_confidence(0) benign(0.23) TCGA-PE-A5DE-01 1 55572941 55572941 G A USP24 Missense_Mutation p.S1578L 0.12 deleterious(0) possibly_damaging(0.655) TCGA-PE-A5DE-01 1 57476444 57476444 G C DAB1 Nonsense_Mutation p.S531* 0.14 TCGA-PE-A5DE-01 1 59127121 59127121 C T MYSM1 Missense_Mutation p.E743K 0.11 tolerated(0.27) benign(0.027) TCGA-PE-A5DE-01 1 62941791 62941791 C T DOCK7 Missense_Mutation p.E1860K 0.07 deleterious(0.05) benign(0.105) TCGA-PE-A5DE-01 1 6505739 6505739 G C ESPN Missense_Mutation p.R403T 0.17 tolerated(0.29) possibly_damaging(0.529) TCGA-PE-A5DE-01 1 68948311 68948311 C T DEPDC1 Missense_Mutation p.D394N 0.15 tolerated(0.69) benign(0.002) TCGA-PE-A5DE-01 1 76349502 76349502 G A MSH4 Silent p.Q701Q 0.11 TCGA-PE-A5DE-01 1 78420979 78420979 C T FUBP1 Missense_Mutation p.D581N 0.08 deleterious(0.03) unknown(0) TCGA-PE-A5DE-01 1 78478888 78478888 C G DNAJB4 Missense_Mutation p.S122C 0.16 deleterious(0.05) benign(0.246) TCGA-PE-A5DE-01 1 8424175 8424175 C T RERE Missense_Mutation p.E561K 0.14 probably_damaging(0.968) TCGA-PE-A5DE-01 1 86848880 86848880 C T ODF2L Splice_Site p.X125_splice 0.16 TCGA-PE-A5DE-01 1 87598488 87598488 C T RP5-1052I5.2 Intron 0.14 TCGA-PE-A5DE-01 1 89447861 89447861 G A RBMXL1 3'UTR 0.16 TCGA-PE-A5DE-01 20 18038391 18038391 C T OVOL2 5'UTR 0.10 TCGA-PE-A5DE-01 20 18448047 18448047 C T POLR3F 5'UTR 0.17 TCGA-PE-A5DE-01 20 18523792 18523792 G A SEC23B Nonsense_Mutation p.W547* 0.14 TCGA-PE-A5DE-01 20 23028944 23028944 C T THBD Missense_Mutation p.E400K 0.18 tolerated(0.1) benign(0.022) TCGA-PE-A5DE-01 20 2315917 2315917 G A TGM3 Missense_Mutation p.E600K 0.13 tolerated(1) benign(0.019) TCGA-PE-A5DE-01 20 25273142 25273142 C T PYGB Silent p.I690I 0.10 TCGA-PE-A5DE-01 20 34054796 34054796 C T CEP250 Silent p.F166F 0.16 TCGA-PE-A5DE-01 20 39317410 39317410 G C MAFB Silent p.L27L 0.17 TCGA-PE-A5DE-01 20 44472246 44472246 G C ACOT8 Nonsense_Mutation p.S254* 0.06 TCGA-PE-A5DE-01 20 48520764 48520764 C T SPATA2 3'UTR 0.17 TCGA-PE-A5DE-01 20 48521771 48521771 C G SPATA2 3'UTR 0.14 TCGA-PE-A5DE-01 20 49226253 49226253 C T FAM65C Missense_Mutation p.E141K 0.19 deleterious(0) possibly_damaging(0.877) TCGA-PE-A5DE-01 20 54961551 54961551 C T AURKA Silent p.V27V 0.17 TCGA-PE-A5DE-01 20 54961556 54961556 G C AURKA Missense_Mutation p.L26V 0.15 tolerated(0.19) benign(0.004) TCGA-PE-A5DE-01 20 5527486 5527486 C T GPCPD1 3'UTR 0.14 TCGA-PE-A5DE-01 20 56188374 56188374 C T ZBP1 Missense_Mutation p.R172K 0.09 tolerated(0.96) benign(0.123) TCGA-PE-A5DE-01 20 57428833 57428833 G C GNAS Missense_Mutation p.Q171H 0.12 deleterious_low_confidence(0.04) unknown(0) TCGA-PE-A5DE-01 20 5927120 5927120 C G TRMT6 Missense_Mutation p.G63A 0.06 deleterious(0.02) probably_damaging(0.991) TCGA-PE-A5DE-01 20 9519129 9519129 C T PAK7 3'UTR 0.20 TCGA-PE-A5DE-01 20 9520009 9520009 C G PAK7 3'UTR 0.09 TCGA-PE-A5DE-01 21 32119357 32119357 G A KRTAP21-2 Missense_Mutation p.S55F 0.23 tolerated_low_confidence(0.55) unknown(0) TCGA-PE-A5DE-01 21 34133372 34133372 G A PAXBP1 Nonsense_Mutation p.Q325* 0.13 TCGA-PE-A5DE-01 21 34924991 34924991 G A SON Missense_Mutation p.E1152K 0.10 benign(0.292) TCGA-PE-A5DE-01 21 43732333 43732333 C A TFF3 3'UTR 0.20 TCGA-PE-A5DE-01 21 47697514 47697514 C T MCM3AP Silent p.L595L 0.11 TCGA-PE-A5DE-01 22 17071960 17071960 C T CCT8L2 Nonsense_Mutation p.W494* 0.12 TCGA-PE-A5DE-01 22 17590693 17590693 G A IL17RA Missense_Mutation p.E862K 0.27 tolerated_low_confidence(0.34) benign(0) TCGA-PE-A5DE-01 22 19495004 19495004 G A CDC45 Missense_Mutation p.G339E 0.07 deleterious(0) probably_damaging(0.992) TCGA-PE-A5DE-01 22 22556541 22556541 G C IGLV11-55 Missense_Mutation p.E119Q 0.11 tolerated(0.18) benign(0.004) TCGA-PE-A5DE-01 22 29750804 29750804 G C AP1B1 Missense_Mutation p.S258C 0.20 deleterious(0) probably_damaging(0.996) TCGA-PE-A5DE-01 22 30421990 30421990 C T MTMR3 3'UTR 0.17 TCGA-PE-A5DE-01 22 32628947 32628947 C T SLC5A4 Silent p.L320L 0.09 TCGA-PE-A5DE-01 22 36633125 36633125 G A APOL2 Intron 0.50 TCGA-PE-A5DE-01 22 40722651 40722651 G A TNRC6B 3'UTR 0.16 TCGA-PE-A5DE-01 22 40802664 40802664 C G SGSM3 Missense_Mutation p.Q395E 0.13 deleterious(0.03) benign(0.028) TCGA-PE-A5DE-01 22 41621831 41621831 G C L3MBTL2 Missense_Mutation p.D464H 0.17 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 22 41621914 41621914 G C L3MBTL2 Missense_Mutation p.Q491H 0.23 tolerated(0.05) benign(0.081) TCGA-PE-A5DE-01 22 45277578 45277578 G A PHF21B 3'UTR 0.23 TCGA-PE-A5DE-01 22 45278144 45278144 G A PHF21B 3'UTR 0.21 TCGA-PE-A5DE-01 22 50320985 50320985 G A CRELD2 3'UTR 0.30 TCGA-PE-A5DE-01 2 103380843 103380843 C A TMEM182 Missense_Mutation p.F96L 0.06 tolerated(0.27) probably_damaging(0.95) TCGA-PE-A5DE-01 2 111921798 111921798 G C BCL2L11 Missense_Mutation p.R196T 0.12 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-PE-A5DE-01 2 11348448 11348448 C G ROCK2 Missense_Mutation p.E777Q 0.17 tolerated(0.67) benign(0.004) TCGA-PE-A5DE-01 2 120388454 120388454 G A PCDP1 Missense_Mutation p.D651N 0.33 tolerated(0.12) benign(0.012) TCGA-PE-A5DE-01 2 128409269 128409269 G A GPR17 Silent p.P348P 0.12 TCGA-PE-A5DE-01 2 128605577 128605577 C G POLR2D 3'UTR 0.19 TCGA-PE-A5DE-01 2 135870800 135870800 C T RAB3GAP1 Missense_Mutation p.L148F 0.13 deleterious(0) probably_damaging(0.984) TCGA-PE-A5DE-01 2 138163218 138163218 G A THSD7B Missense_Mutation p.E846K 0.14 deleterious(0.01) possibly_damaging(0.486) TCGA-PE-A5DE-01 2 141253250 141253250 G A LRP1B Missense_Mutation p.S2973F 0.15 possibly_damaging(0.485) TCGA-PE-A5DE-01 2 163291988 163291988 G A KCNH7 Silent p.I558I 0.12 TCGA-PE-A5DE-01 2 1652186 1652186 G A PXDN Silent p.F1122F 0.09 TCGA-PE-A5DE-01 2 165578606 165578606 C T COBLL1 Missense_Mutation p.M325I 0.14 tolerated(0.33) benign(0.091) TCGA-PE-A5DE-01 2 171702291 171702291 G A GAD1 Missense_Mutation p.E315K 0.20 tolerated(0.1) benign(0.013) TCGA-PE-A5DE-01 2 174232419 174232419 C A CDCA7 3'UTR 0.13 TCGA-PE-A5DE-01 2 174232427 174232427 C T CDCA7 3'UTR 0.13 TCGA-PE-A5DE-01 2 175809639 175809639 G C CHN1 Missense_Mutation p.R31G 0.17 tolerated(0.14) benign(0.09) TCGA-PE-A5DE-01 2 179442608 179442608 C A TTN Nonsense_Mutation p.E22849* 0.07 TCGA-PE-A5DE-01 2 179442805 179442805 C G TTN Missense_Mutation p.E22813Q 0.12 TCGA-PE-A5DE-01 2 179442814 179442814 C T TTN Missense_Mutation p.E22810K 0.12 TCGA-PE-A5DE-01 2 179531966 179531966 C T TTN Missense_Mutation p.E11932K 0.15 TCGA-PE-A5DE-01 2 179598474 179598474 G A TTN Silent p.I5214I 0.06 TCGA-PE-A5DE-01 2 179611025 179611025 C G TTN Intron 0.21 TCGA-PE-A5DE-01 2 191927525 191927525 C T STAT4 Missense_Mutation p.E302K 0.09 tolerated(0.21) possibly_damaging(0.758) TCGA-PE-A5DE-01 2 201888720 201888720 C T FAM126B Missense_Mutation p.D5N 0.16 deleterious(0) benign(0.011) TCGA-PE-A5DE-01 2 202131498 202131498 C T CASP8 Nonsense_Mutation p.Q156* 0.16 TCGA-PE-A5DE-01 2 204820495 204820495 C G ICOS Silent p.L65L 0.11 TCGA-PE-A5DE-01 2 210557365 210557365 G C MAP2 Silent p.S157S 0.20 TCGA-PE-A5DE-01 2 210559872 210559872 G C MAP2 Missense_Mutation p.G993A 0.14 tolerated_low_confidence(0.11) benign(0.053) TCGA-PE-A5DE-01 2 219501754 219501754 C T PLCD4 3'UTR 0.17 TCGA-PE-A5DE-01 2 220771269 220771269 C G MIR4268 RNA 0.28 TCGA-PE-A5DE-01 2 223918154 223918154 C T KCNE4 3'UTR 0.20 TCGA-PE-A5DE-01 2 229890477 229890477 G A PID1 Silent p.A206A 0.09 TCGA-PE-A5DE-01 2 232325433 232325450 TCATCTTCGTCGTCGTCG - NCL In_Frame_Del p.D248_D253del 0.21 TCGA-PE-A5DE-01 2 234255501 234255501 G A SAG Silent p.L387L 0.21 TCGA-PE-A5DE-01 2 234350626 234350626 C A DGKD Silent p.L393L 0.17 TCGA-PE-A5DE-01 2 238742663 238742663 G C RBM44 Missense_Mutation p.Q971H 0.16 deleterious(0) probably_damaging(0.94) TCGA-PE-A5DE-01 2 238742667 238742667 G A RBM44 Missense_Mutation p.E973K 0.16 tolerated(0.44) possibly_damaging(0.901) TCGA-PE-A5DE-01 2 239972573 239972573 C G HDAC4 3'UTR 0.22 TCGA-PE-A5DE-01 2 240969292 240969292 G C OR6B2 Silent p.L185L 0.17 TCGA-PE-A5DE-01 2 241513987 241513987 G C RNPEPL1 Missense_Mutation p.Q179H 0.32 tolerated(0.89) benign(0.108) TCGA-PE-A5DE-01 2 26950898 26950898 C T KCNK3 Missense_Mutation p.T216M 0.21 deleterious(0.01) possibly_damaging(0.87) TCGA-PE-A5DE-01 2 30381839 30381839 G C YPEL5 3'UTR 0.17 TCGA-PE-A5DE-01 2 33768580 33768580 C T RASGRP3 Missense_Mutation p.S427F 0.10 deleterious(0) possibly_damaging(0.522) TCGA-PE-A5DE-01 2 37014283 37014283 G A VIT Missense_Mutation p.D308N 0.17 deleterious(0) probably_damaging(0.999) TCGA-PE-A5DE-01 2 46313344 46313344 C T PRKCE Intron 0.15 TCGA-PE-A5DE-01 2 48808393 48808393 C T STON1-GTF2A1L Silent p.F207F 0.13 TCGA-PE-A5DE-01 2 55515574 55515574 C G CCDC88A 3'UTR 0.17 TCGA-PE-A5DE-01 2 74466549 74466549 C T SLC4A5 Silent p.A744A 0.25 TCGA-PE-A5DE-01 2 75196697 75196697 C T POLE4 3'UTR 0.10 TCGA-PE-A5DE-01 2 85777092 85777092 C T GGCX Missense_Mutation p.E748K 0.11 tolerated_low_confidence(0.08) benign(0.004) TCGA-PE-A5DE-01 2 86265851 86265851 C T POLR1A Missense_Mutation p.E1336K 0.10 tolerated(0.9) benign(0.009) TCGA-PE-A5DE-01 2 88874892 88874892 G A EIF2AK3 Silent p.F703F 0.09 TCGA-PE-A5DE-01 3 101212728 101212728 G C SENP7 Missense_Mutation p.L59V 0.14 tolerated(0.39) benign(0.008) TCGA-PE-A5DE-01 3 107766132 107766132 C T CD47 3'UTR 0.11 TCGA-PE-A5DE-01 3 111439652 111439652 G A PLCXD2 Intron 0.16 TCGA-PE-A5DE-01 3 113376553 113376553 C G KIAA2018 Missense_Mutation p.D1326H 0.11 possibly_damaging(0.743) TCGA-PE-A5DE-01 3 120365214 120365214 C G HGD Splice_Site p.X184_splice 0.06 TCGA-PE-A5DE-01 3 122003562 122003562 G A CASR Missense_Mutation p.E931K 0.14 deleterious_low_confidence(0.02) benign(0.385) TCGA-PE-A5DE-01 3 122928120 122928120 C T SEC22A Missense_Mutation p.S19F 0.30 deleterious(0) probably_damaging(0.996) TCGA-PE-A5DE-01 3 12434121 12434121 C G PPARG Missense_Mutation p.F163L 0.14 deleterious(0) possibly_damaging(0.742) TCGA-PE-A5DE-01 3 126737325 126737325 C G PLXNA1 Silent p.L1283L 0.14 TCGA-PE-A5DE-01 3 130187795 130187795 C T COL6A5 Missense_Mutation p.S2316L 0.08 deleterious(0.02) benign(0.244) TCGA-PE-A5DE-01 3 130799393 130799393 G A NEK11 Silent p.V99V 0.10 TCGA-PE-A5DE-01 3 130799394 130799394 G A NEK11 Missense_Mutation p.E100K 0.10 deleterious(0.01) possibly_damaging(0.893) TCGA-PE-A5DE-01 3 133546832 133546832 C T RAB6B 3'UTR 0.16 TCGA-PE-A5DE-01 3 136012615 136012615 C T PCCB Silent p.F244F 0.19 TCGA-PE-A5DE-01 3 136068096 136068096 C T STAG1 Missense_Mutation p.D1059N 0.10 deleterious(0.02) probably_damaging(0.987) TCGA-PE-A5DE-01 3 136192453 136192453 C G STAG1 Missense_Mutation p.L351F 0.12 deleterious(0) probably_damaging(0.958) TCGA-PE-A5DE-01 3 142402873 142402873 C G PLS1 Missense_Mutation p.S202C 0.21 deleterious(0) possibly_damaging(0.822) TCGA-PE-A5DE-01 3 15219625 15219625 C T COL6A4P1 RNA 0.14 TCGA-PE-A5DE-01 3 15300422 15300422 G A SH3BP5 Missense_Mutation p.R269W 0.15 deleterious(0) probably_damaging(0.993) TCGA-PE-A5DE-01 3 164700809 164700809 A T SI Missense_Mutation p.V1743E 0.21 tolerated(0.15) benign(0.066) TCGA-PE-A5DE-01 3 169504247 169504247 G C MYNN Missense_Mutation p.L538F 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-PE-A5DE-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-PE-A5DE-01 3 179597837 179597837 C T PEX5L Missense_Mutation p.E129K 0.12 tolerated_low_confidence(0.38) benign(0.194) TCGA-PE-A5DE-01 3 183368601 183368601 G C KLHL24 Missense_Mutation p.D153H 0.09 deleterious(0) probably_damaging(0.992) TCGA-PE-A5DE-01 3 183368615 183368615 G C KLHL24 Missense_Mutation p.K157N 0.13 tolerated(0.21) benign(0.173) TCGA-PE-A5DE-01 3 183976326 183976326 C G ECE2 Intron 0.22 TCGA-PE-A5DE-01 3 188326971 188326971 C G LPP Missense_Mutation p.S151C 0.13 deleterious(0.02) possibly_damaging(0.503) TCGA-PE-A5DE-01 3 195016498 195016498 C G ACAP2 Missense_Mutation p.K537N 0.10 tolerated(0.29) benign(0.001) TCGA-PE-A5DE-01 3 195512476 195512476 G A MUC4 Missense_Mutation p.S1992L 0.05 unknown(0) TCGA-PE-A5DE-01 3 2928874 2928874 G A CNTN4 Silent p.G302G 0.08 TCGA-PE-A5DE-01 3 386364 386364 T A CHL1 Missense_Mutation p.L274M 0.16 deleterious(0) probably_damaging(0.976) TCGA-PE-A5DE-01 3 38648264 38648264 C T SCN5A Missense_Mutation p.E346K 0.14 tolerated(0.3) benign(0.005) TCGA-PE-A5DE-01 3 42688202 42688202 C T NKTR 3'UTR 0.14 TCGA-PE-A5DE-01 3 42688278 42688278 C G NKTR 3'UTR 0.10 TCGA-PE-A5DE-01 3 47103760 47103760 C T SETD2 Silent p.E2062E 0.12 TCGA-PE-A5DE-01 3 47629740 47629740 G C SMARCC1 Missense_Mutation p.P1093A 0.13 tolerated_low_confidence(0.09) unknown(0) TCGA-PE-A5DE-01 3 4776888 4776888 G A ITPR1 Missense_Mutation p.M1783I 0.21 tolerated(0.42) benign(0.019) TCGA-PE-A5DE-01 3 48299430 48299430 C T ZNF589 Intron 0.12 TCGA-PE-A5DE-01 3 49050837 49050837 G A WDR6 Missense_Mutation p.D654N 0.13 tolerated(0.07) possibly_damaging(0.854) TCGA-PE-A5DE-01 3 50357457 50357457 G A HYAL2 Missense_Mutation p.S155L 0.09 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 3 52011898 52011898 G C ABHD14A Missense_Mutation p.Q27H 0.13 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-PE-A5DE-01 3 52290639 52290639 G A WDR82 3'UTR 0.21 TCGA-PE-A5DE-01 3 52427371 52427371 C G DNAH1 Missense_Mutation p.S3499C 0.08 benign(0.195) TCGA-PE-A5DE-01 3 57846564 57846564 G A SLMAP Missense_Mutation p.E276K 0.17 deleterious(0.01) possibly_damaging(0.881) TCGA-PE-A5DE-01 3 62118323 62118323 G C PTPRG Missense_Mutation p.L221F 0.17 deleterious(0) probably_damaging(0.971) TCGA-PE-A5DE-01 3 62189284 62189284 G C PTPRG Missense_Mutation p.K605N 0.15 tolerated(0.09) benign(0.201) TCGA-PE-A5DE-01 3 64554192 64554192 C T ADAMTS9 Missense_Mutation p.R1459Q 0.15 tolerated(0.07) possibly_damaging(0.523) TCGA-PE-A5DE-01 3 67548671 67548671 C T SUCLG2 Missense_Mutation p.R269Q 0.16 deleterious(0.01) possibly_damaging(0.629) TCGA-PE-A5DE-01 3 98002001 98002001 C T OR5H2 Silent p.F90F 0.11 TCGA-PE-A5DE-01 4 140444559 140444559 G A SETD7 Missense_Mutation p.S198L 0.27 deleterious(0.02) benign(0.059) TCGA-PE-A5DE-01 4 146031300 146031300 G A ABCE1 Missense_Mutation p.E151K 0.22 deleterious(0) probably_damaging(0.911) TCGA-PE-A5DE-01 4 159636499 159636499 G A PPID Silent p.F234F 0.17 TCGA-PE-A5DE-01 4 175412433 175412433 C T HPGD 3'UTR 0.19 TCGA-PE-A5DE-01 4 38800365 38800365 C G TLR1 Missense_Mutation p.D30H 0.10 deleterious(0.02) possibly_damaging(0.541) TCGA-PE-A5DE-01 4 48990513 48990513 C G CWH43 Silent p.L21L 0.20 TCGA-PE-A5DE-01 4 95444938 95444938 G C PDLIM5 Missense_Mutation p.D54H 0.12 deleterious(0) possibly_damaging(0.593) TCGA-PE-A5DE-01 4 99998046 99998046 C T ADH5 Missense_Mutation p.D125N 0.16 deleterious(0.03) benign(0.146) TCGA-PE-A5DE-01 5 102365017 102365017 C T PAM 3'Flank 0.12 TCGA-PE-A5DE-01 5 114548094 114548094 A G PGGT1B 3'UTR 0.56 TCGA-PE-A5DE-01 5 118454697 118454697 G A DMXL1 Missense_Mutation p.E311K 0.10 tolerated(0.32) benign(0.002) TCGA-PE-A5DE-01 5 126778807 126778807 G C MEGF10 Missense_Mutation p.R827T 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-PE-A5DE-01 5 130767000 130767000 G C RAPGEF6 Silent p.V1347V 0.14 TCGA-PE-A5DE-01 5 133541618 133541618 G A PPP2CA Missense_Mutation p.L103F 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-PE-A5DE-01 5 133710117 133710117 G A UBE2B Missense_Mutation p.E30K 0.08 tolerated(0.27) benign(0.134) TCGA-PE-A5DE-01 5 137761226 137761226 G A KDM3B Missense_Mutation p.D1456N 0.11 tolerated(0.45) benign(0.059) TCGA-PE-A5DE-01 5 140433360 140433360 C T PCDHB1 Missense_Mutation p.R769C 0.23 deleterious(0) possibly_damaging(0.507) TCGA-PE-A5DE-01 5 140564034 140564034 G A PCDHB16 Missense_Mutation p.D634N 0.16 deleterious_low_confidence(0) benign(0.177) TCGA-PE-A5DE-01 5 140769580 140769580 C T PCDHGB4 Missense_Mutation p.A710V 0.11 tolerated(0.14) benign(0.178) TCGA-PE-A5DE-01 5 140799815 140799815 G C PCDHGB7 Missense_Mutation p.E797Q 0.14 tolerated(0.28) possibly_damaging(0.69) TCGA-PE-A5DE-01 5 147204248 147204248 G A SPINK1 Silent p.L72L 0.20 TCGA-PE-A5DE-01 5 150275144 150275144 C G ZNF300 Missense_Mutation p.E569Q 0.34 deleterious(0.05) benign(0.037) TCGA-PE-A5DE-01 5 156592823 156592823 G A FAM71B Silent p.L119L 0.17 TCGA-PE-A5DE-01 5 177548700 177548700 G T N4BP3 Missense_Mutation p.D445Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-PE-A5DE-01 5 177649544 177649544 C T PHYKPL Missense_Mutation p.E247K 0.10 deleterious(0.04) possibly_damaging(0.823) TCGA-PE-A5DE-01 5 180377136 180377136 G A BTNL8 Silent p.R365R 0.22 TCGA-PE-A5DE-01 5 36105264 36105264 C T LMBRD2 Missense_Mutation p.E645K 0.13 tolerated(0.18) benign(0.079) TCGA-PE-A5DE-01 5 39342213 39342213 C A C9 Missense_Mutation p.D55Y 0.11 deleterious(0.02) probably_damaging(0.977) TCGA-PE-A5DE-01 5 41172441 41172441 C T C6 Missense_Mutation p.E393K 0.16 tolerated(0.24) benign(0.01) TCGA-PE-A5DE-01 5 54281202 54281202 G A ESM1 Silent p.L48L 0.09 TCGA-PE-A5DE-01 5 61923315 61923315 A G IPO11 3'UTR 0.23 TCGA-PE-A5DE-01 5 63626151 63626151 G C RNF180 Missense_Mutation p.L499F 0.18 tolerated(0.05) benign(0.094) TCGA-PE-A5DE-01 5 68419223 68419223 G A SLC30A5 Missense_Mutation p.E657K 0.13 tolerated(0.06) benign(0.157) TCGA-PE-A5DE-01 5 71757044 71757044 C G ZNF366 Missense_Mutation p.E94Q 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.503) TCGA-PE-A5DE-01 5 72875844 72875844 G A UTP15 Missense_Mutation p.M494I 0.15 tolerated(0.59) benign(0.021) TCGA-PE-A5DE-01 5 74959226 74959226 A G ANKDD1B Missense_Mutation p.K368R 0.12 tolerated(0.11) benign(0.026) TCGA-PE-A5DE-01 5 74959231 74959231 G A ANKDD1B Missense_Mutation p.A370T 0.18 deleterious(0) probably_damaging(0.986) TCGA-PE-A5DE-01 6 105609709 105609709 C T POPDC3 Missense_Mutation p.E26K 0.21 deleterious(0) possibly_damaging(0.857) TCGA-PE-A5DE-01 6 107016364 107016364 C G AIM1 Missense_Mutation p.Q1699E 0.14 deleterious(0) possibly_damaging(0.669) TCGA-PE-A5DE-01 6 117593712 117593712 C A VGLL2 3'UTR 0.17 TCGA-PE-A5DE-01 6 123580807 123580807 C A TRDN Missense_Mutation p.G611V 0.26 tolerated_low_confidence(0.09) benign(0.014) TCGA-PE-A5DE-01 6 132031248 132031248 C T CTAGE9 Missense_Mutation p.G304S 0.24 deleterious(0.04) possibly_damaging(0.499) TCGA-PE-A5DE-01 6 133850342 133850342 G A EYA4 3'UTR 0.20 TCGA-PE-A5DE-01 6 136913690 136913690 C T MAP3K5 Missense_Mutation p.E981K 0.11 tolerated(0.16) probably_damaging(0.99) TCGA-PE-A5DE-01 6 148664318 148664318 G A SASH1 Missense_Mutation p.E39K 0.21 deleterious_low_confidence(0.04) benign(0.001) TCGA-PE-A5DE-01 6 148865467 148865467 G A SASH1 Missense_Mutation p.G954E 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.521) TCGA-PE-A5DE-01 6 152576056 152576056 G A SYNE1 Missense_Mutation p.H6477Y 0.17 benign(0.153) TCGA-PE-A5DE-01 6 160328584 160328584 C T MAS1 Silent p.F199F 0.22 TCGA-PE-A5DE-01 6 26032115 26032115 C A HIST1H3B Silent p.S58S 0.18 TCGA-PE-A5DE-01 6 26216590 26216590 C T HIST1H2BG Silent p.E94E 0.15 TCGA-PE-A5DE-01 6 26392970 26392970 C T BTN2A2 Silent p.F449F 0.08 TCGA-PE-A5DE-01 6 26502135 26502135 G A BTN1A1 Missense_Mutation p.E133K 0.16 tolerated(0.1) benign(0.02) TCGA-PE-A5DE-01 6 26598833 26598833 C G ABT1 Nonsense_Mutation p.S260* 0.17 TCGA-PE-A5DE-01 6 27114380 27114380 G A HIST1H2BK Silent p.F66F 0.06 TCGA-PE-A5DE-01 6 27806056 27806056 C T HIST1H2AK Missense_Mutation p.R21K 0.11 tolerated_low_confidence(0.27) unknown(0) TCGA-PE-A5DE-01 6 29644742 29644742 C G ZFP57 Missense_Mutation p.K13N 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-PE-A5DE-01 6 29974674 29974674 C T ZNRD1-AS1 Intron 0.12 TCGA-PE-A5DE-01 6 31236907 31236907 G A HLA-C 3'UTR 0.07 TCGA-PE-A5DE-01 6 31679778 31679778 C T LY6G6E 3'Flank 0.12 TCGA-PE-A5DE-01 6 31762983 31762983 G A VARS Silent p.L4L 0.08 TCGA-PE-A5DE-01 6 31828381 31828381 C T NEU1 Silent p.R211R 0.24 TCGA-PE-A5DE-01 6 32023869 32023869 C G TNXB Silent p.L2742L 0.13 TCGA-PE-A5DE-01 6 32062954 32062954 C T TNXB Missense_Mutation p.E753K 0.19 probably_damaging(0.953) TCGA-PE-A5DE-01 6 32119632 32119632 C T PRRT1 5'UTR 0.09 TCGA-PE-A5DE-01 6 32813494 32813494 G C TAP1 Silent p.L763L 0.15 TCGA-PE-A5DE-01 6 33235986 33235986 C G VPS52 Splice_Site p.X234_splice 0.11 TCGA-PE-A5DE-01 6 33289225 33289225 G C DAXX Silent p.L109L 0.16 TCGA-PE-A5DE-01 6 33690933 33690933 C T IP6K3 Missense_Mutation p.C266Y 0.08 tolerated(0.19) probably_damaging(0.941) TCGA-PE-A5DE-01 6 35107863 35107863 G A TCP11 Intron 0.17 TCGA-PE-A5DE-01 6 35480457 35480457 C T TULP1 Missense_Mutation p.E20K 0.33 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-PE-A5DE-01 6 35762924 35762924 C T CLPS Silent p.%3D 0.07 TCGA-PE-A5DE-01 6 4116138 4116138 C T ECI2 Silent p.V385V 0.12 TCGA-PE-A5DE-01 6 44224149 44224149 C T SLC35B2 Missense_Mutation p.R97Q 0.11 tolerated(0.27) benign(0.031) TCGA-PE-A5DE-01 6 46657246 46657246 C T TDRD6 Nonsense_Mutation p.Q461* 0.11 TCGA-PE-A5DE-01 6 88221297 88221297 G A SLC35A1 3'UTR 0.16 TCGA-PE-A5DE-01 7 100029166 100029166 G A MEPCE Missense_Mutation p.E509K 0.11 tolerated(0.09) possibly_damaging(0.621) TCGA-PE-A5DE-01 7 100551848 100551848 C T MUC3A Missense_Mutation p.S200L 0.11 tolerated(0.08) possibly_damaging(0.587) TCGA-PE-A5DE-01 7 100684537 100684537 C T MUC17 Silent p.S3280S 0.18 TCGA-PE-A5DE-01 7 102119287 102119287 G A POLR2J Silent p.F7F 0.09 TCGA-PE-A5DE-01 7 102985157 102985157 C A DNAJC2 5'UTR 0.11 TCGA-PE-A5DE-01 7 123600007 123600007 C T SPAM1 Intron 0.15 TCGA-PE-A5DE-01 7 128483575 128483575 G C FLNC Missense_Mutation p.E919Q 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-PE-A5DE-01 7 135661842 135661842 C T MTPN Missense_Mutation p.D3N 0.12 tolerated(0.3) benign(0) TCGA-PE-A5DE-01 7 137075578 137075578 G A DGKI 3'UTR 0.18 TCGA-PE-A5DE-01 7 142636835 142636835 G C C7orf34 Missense_Mutation p.E64D 0.21 tolerated(0.09) benign(0.035) TCGA-PE-A5DE-01 7 143096459 143096459 G C EPHA1 Missense_Mutation p.L295V 0.09 tolerated(0.33) benign(0.001) TCGA-PE-A5DE-01 7 151699921 151699921 G A GALNTL5 Missense_Mutation p.D261N 0.14 tolerated(0.24) benign(0.007) TCGA-PE-A5DE-01 7 155255355 155255355 C T EN2 Silent p.A325A 0.11 TCGA-PE-A5DE-01 7 16834591 16834591 G A AGR2 Silent p.L149L 0.15 TCGA-PE-A5DE-01 7 44151612 44151612 C T AEBP1 Missense_Mutation p.S667L 0.13 deleterious(0) probably_damaging(0.988) TCGA-PE-A5DE-01 7 57187652 57187652 C T ZNF479 Silent p.E490E 0.10 TCGA-PE-A5DE-01 7 65705509 65705509 C T TPST1 Missense_Mutation p.H33Y 0.11 tolerated_low_confidence(0.88) benign(0.162) TCGA-PE-A5DE-01 7 6776865 6776865 C G PMS2CL RNA 0.14 TCGA-PE-A5DE-01 7 72040609 72040609 G A TYW1B Silent p.F253F 0.08 TCGA-PE-A5DE-01 7 72400518 72400518 G A POM121 Missense_Mutation p.D117N 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-PE-A5DE-01 7 73150668 73150668 C G ABHD11 3'UTR 0.26 TCGA-PE-A5DE-01 7 73610726 73610726 G A EIF4H 3'UTR 0.15 TCGA-PE-A5DE-01 7 75028334 75028334 C T TRIM73 Silent p.C39C 0.10 TCGA-PE-A5DE-01 7 87148737 87148737 G A ABCB1 Silent p.F944F 0.14 TCGA-PE-A5DE-01 7 90896512 90896512 G C FZD1 3'UTR 0.13 TCGA-PE-A5DE-01 7 91503615 91503615 C T MTERF Missense_Mutation p.E165K 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-PE-A5DE-01 7 94879487 94879487 C G PPP1R9A Silent p.L772L 0.11 TCGA-PE-A5DE-01 7 96653581 96653581 C T DLX5 Missense_Mutation p.E119K 0.16 tolerated(0.34) possibly_damaging(0.636) TCGA-PE-A5DE-01 7 99771588 99771588 C G GPC2 Silent p.L254L 0.12 TCGA-PE-A5DE-01 8 100155253 100155253 C T VPS13B Missense_Mutation p.T568I 0.19 tolerated(0.48) benign(0.002) TCGA-PE-A5DE-01 8 120816164 120816164 C T TAF2 Missense_Mutation p.E172K 0.10 tolerated(0.12) possibly_damaging(0.449) TCGA-PE-A5DE-01 8 124361560 124361560 C G ATAD2 Missense_Mutation p.D591H 0.17 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 8 145770835 145770835 C T ARHGAP39 Silent p.K773K 0.20 TCGA-PE-A5DE-01 8 146156997 146156997 C G ZNF16 Silent p.L392L 0.11 TCGA-PE-A5DE-01 8 15531278 15531278 C G TUSC3 Missense_Mutation p.S244C 0.16 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 8 26721895 26721895 C T ADRA1A Missense_Mutation p.A198T 0.40 tolerated(0.51) benign(0.02) TCGA-PE-A5DE-01 8 30643272 30643272 G C PPP2CB 3'UTR 0.14 TCGA-PE-A5DE-01 8 30643453 30643453 G T PPP2CB 3'UTR 0.21 TCGA-PE-A5DE-01 8 32406297 32406297 G A NRG1 Missense_Mutation p.R18Q 0.16 tolerated(0.45) unknown(0) TCGA-PE-A5DE-01 8 53853333 53853333 C T NPBWR1 Missense_Mutation p.S289F 0.19 tolerated(1) probably_damaging(1) TCGA-PE-A5DE-01 8 68982077 68982077 G A PREX2 Missense_Mutation p.R484K 0.19 deleterious(0.01) probably_damaging(0.965) TCGA-PE-A5DE-01 8 71068636 71068636 G A NCOA2 Missense_Mutation p.S655L 0.15 deleterious(0.01) possibly_damaging(0.679) TCGA-PE-A5DE-01 8 72948630 72948630 G T TRPA1 Silent p.I816I 0.33 TCGA-PE-A5DE-01 8 91804137 91804137 C T NECAB1 Missense_Mutation p.S8L 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-PE-A5DE-01 8 9414115 9414115 C T TNKS Silent p.F222F 0.30 TCGA-PE-A5DE-01 8 95416366 95416366 G A RAD54B Missense_Mutation p.H295Y 0.17 deleterious(0.03) benign(0.031) TCGA-PE-A5DE-01 8 97346329 97346329 G A PTDSS1 3'UTR 0.17 TCGA-PE-A5DE-01 9 101216309 101216309 C T GABBR2 Missense_Mutation p.R397K 0.04 tolerated(1) benign(0.003) TCGA-PE-A5DE-01 9 101536318 101536318 C T ANKS6 Silent p.L554L 0.12 TCGA-PE-A5DE-01 9 103014645 103014645 G A INVS Missense_Mutation p.D387N 0.09 tolerated(0.09) probably_damaging(0.951) TCGA-PE-A5DE-01 9 103055193 103055193 C T INVS Missense_Mutation p.S885F 0.10 deleterious_low_confidence(0.05) benign(0.003) TCGA-PE-A5DE-01 9 1057202 1057202 G A DMRT2 Missense_Mutation p.E539K 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-PE-A5DE-01 9 111641729 111641729 G A IKBKAP Missense_Mutation p.S1190L 0.08 deleterious(0) probably_damaging(0.999) TCGA-PE-A5DE-01 9 118950121 118950121 G A PAPPA Silent p.P368P 0.13 TCGA-PE-A5DE-01 9 125680889 125680889 C G ZBTB26 Nonstop_Mutation p.*442Sext*28 0.26 TCGA-PE-A5DE-01 9 125681055 125681055 C A ZBTB26 Nonsense_Mutation p.E387* 0.12 TCGA-PE-A5DE-01 9 129796710 129796710 G C RALGPS1 Missense_Mutation p.E73Q 0.13 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 9 131038977 131038977 C T SWI5 Silent p.F123F 0.16 TCGA-PE-A5DE-01 9 131768563 131768563 C T NUP188 Silent p.I1663I 0.11 TCGA-PE-A5DE-01 9 132084459 132084459 C T C9orf106 RNA 0.14 TCGA-PE-A5DE-01 9 133762269 133762269 G A ABL1 3'Flank 0.15 TCGA-PE-A5DE-01 9 135553388 135553388 G C GTF3C4 Missense_Mutation p.E128Q 0.12 tolerated(0.19) benign(0.012) TCGA-PE-A5DE-01 9 136508598 136508598 G A DBH Missense_Mutation p.A270T 0.24 tolerated(0.17) benign(0.021) TCGA-PE-A5DE-01 9 138011559 138011559 C G OLFM1 Silent p.L313L 0.15 TCGA-PE-A5DE-01 9 138669256 138669256 G A KCNT1 Missense_Mutation p.E808K 0.12 deleterious(0) probably_damaging(0.971) TCGA-PE-A5DE-01 9 139739806 139739806 G A C9orf172 Missense_Mutation p.E314K 0.11 tolerated(0.15) benign(0.075) TCGA-PE-A5DE-01 9 139960064 139960064 C G SAPCD2 Missense_Mutation p.E247D 0.11 tolerated(0.05) possibly_damaging(0.842) TCGA-PE-A5DE-01 9 139960099 139960099 C G SAPCD2 Missense_Mutation p.E236Q 0.10 deleterious(0.04) possibly_damaging(0.562) TCGA-PE-A5DE-01 9 14801834 14801834 G A FREM1 Silent p.I1170I 0.08 TCGA-PE-A5DE-01 9 18928410 18928410 G C FAM154A Silent p.V355V 0.08 TCGA-PE-A5DE-01 9 26892705 26892705 C T CAAP1 Silent p.G3G 0.12 TCGA-PE-A5DE-01 9 34647847 34647847 C T GALT Silent p.H132H 0.12 TCGA-PE-A5DE-01 9 34725691 34725691 G A FAM205A Silent p.L516L 0.10 TCGA-PE-A5DE-01 9 37429743 37429743 C T GRHPR Missense_Mutation p.R170W 0.14 deleterious(0) possibly_damaging(0.588) TCGA-PE-A5DE-01 9 441399 441399 C T DOCK8 Silent p.F1779F 0.08 TCGA-PE-A5DE-01 9 72333321 72333321 C T PTAR1 Silent p.R382R 0.09 TCGA-PE-A5DE-01 9 75778434 75778434 G A ANXA1 Missense_Mutation p.D200N 0.13 deleterious(0.02) possibly_damaging(0.608) TCGA-PE-A5DE-01 9 80863765 80863765 A G CEP78 Missense_Mutation p.K349E 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-PE-A5DE-01 9 86618259 86618259 G A RMI1 3'UTR 0.07 TCGA-PE-A5DE-01 9 88632435 88632435 C T NAA35 Silent p.I576I 0.20 TCGA-PE-A5DE-01 9 95013095 95013095 T C IARS Missense_Mutation p.T777A 0.30 tolerated(0.13) possibly_damaging(0.534) TCGA-PE-A5DE-01 9 99489051 99489051 C T RP11-535M15.2 RNA 0.13 TCGA-PE-A5DE-01 X 101382669 101382669 G A TCEAL2 3'UTR 0.11 TCGA-PE-A5DE-01 X 10423046 10423046 C T MID1 Missense_Mutation p.E507K 0.09 deleterious(0.05) probably_damaging(0.983) TCGA-PE-A5DE-01 X 107838818 107838818 C T COL4A5 Silent p.L501L 0.10 TCGA-PE-A5DE-01 X 109695735 109695735 G C RGAG1 Missense_Mutation p.E630D 0.11 deleterious(0.04) benign(0.217) TCGA-PE-A5DE-01 X 123215346 123215346 G A STAG2 Silent p.L964L 0.07 TCGA-PE-A5DE-01 X 123514823 123514823 G A TENM1 Silent p.L2588L 0.07 TCGA-PE-A5DE-01 X 130416545 130416545 G A IGSF1 Silent p.D373D 0.07 TCGA-PE-A5DE-01 X 135570244 135570244 G C BRS3 5'UTR 0.17 TCGA-PE-A5DE-01 X 13752267 13752267 G A TRAPPC2 5'UTR 0.18 TCGA-PE-A5DE-01 X 142716692 142716692 C T SLITRK4 Missense_Mutation p.E745K 0.13 tolerated(0.67) probably_damaging(0.98) TCGA-PE-A5DE-01 X 144906974 144906974 C T SLITRK2 3'UTR 0.13 TCGA-PE-A5DE-01 X 14548231 14548231 G A GLRA2 Missense_Mutation p.E18K 0.08 tolerated_low_confidence(0.48) benign(0.001) TCGA-PE-A5DE-01 X 149014002 149014002 G C MAGEA8 Nonstop_Mutation p.*319Sext*42 0.15 TCGA-PE-A5DE-01 X 149761127 149761127 G A MTM1 Silent p.E17E 0.06 TCGA-PE-A5DE-01 X 150842510 150842510 C G PASD1 Nonsense_Mutation p.S676* 0.07 TCGA-PE-A5DE-01 X 152807268 152807268 G A ATP2B3 Missense_Mutation p.R183Q 0.09 deleterious(0.03) possibly_damaging(0.871) TCGA-PE-A5DE-01 X 154159467 154159467 C T F8 Missense_Mutation p.M866I 0.12 tolerated(0.6) benign(0) TCGA-PE-A5DE-01 X 155011339 155011339 G A SPRY3 3'UTR 0.19 TCGA-PE-A5DE-01 X 1714352 1714352 G A AKAP17A Missense_Mutation p.E280K 0.10 tolerated(0.07) unknown(0) TCGA-PE-A5DE-01 X 18658810 18658810 G C RS1 3'UTR 0.19 TCGA-PE-A5DE-01 X 20030534 20030534 C A MAP7D2 Missense_Mutation p.D669Y 0.11 deleterious(0) unknown(0) TCGA-PE-A5DE-01 X 3229058 3229058 G A MXRA5 Nonsense_Mutation p.Q2396* 0.17 TCGA-PE-A5DE-01 X 32360361 32360361 C T DMD Silent p.L1926L 0.12 TCGA-PE-A5DE-01 X 35993261 35993261 C T CXorf22 Intron 0.12 TCGA-PE-A5DE-01 X 37028317 37028317 G A FAM47C Missense_Mutation p.E612K 0.13 tolerated(1) benign(0) TCGA-PE-A5DE-01 X 37028695 37028695 C T FAM47C Missense_Mutation p.L738F 0.14 tolerated(0.1) possibly_damaging(0.52) TCGA-PE-A5DE-01 X 38146013 38146013 C G RPGR Missense_Mutation p.E747Q 0.10 unknown(0) TCGA-PE-A5DE-01 X 40573051 40573051 G A MED14 Nonsense_Mutation p.Q211* 0.09 TCGA-PE-A5DE-01 X 48565975 48565975 G A SUV39H1 3'UTR 0.10 TCGA-PE-A5DE-01 X 48566237 48566237 G C SUV39H1 3'UTR 0.07 TCGA-PE-A5DE-01 X 49022629 49022629 C T MAGIX Missense_Mutation p.S299F 0.16 deleterious(0.03) probably_damaging(0.99) TCGA-PE-A5DE-01 X 50053243 50053243 G C CCNB3 Missense_Mutation p.E692Q 0.14 tolerated(0.09) benign(0.034) TCGA-PE-A5DE-01 X 53407567 53407567 C T SMC1A Missense_Mutation p.E1198K 0.07 deleterious(0) benign(0.311) TCGA-PE-A5DE-01 X 53438717 53438717 C G SMC1A Missense_Mutation p.E416D 0.10 tolerated(0.1) benign(0.123) TCGA-PE-A5DE-01 X 69421894 69421894 G A DGAT2L6 Silent p.V209V 0.11 TCGA-PE-A5DE-01 X 70444262 70444262 C T GJB1 Silent p.F235F 0.15 TCGA-PE-A5DE-01 X 70837240 70837240 C T CXCR3 Missense_Mutation p.D75N 0.09 tolerated(0.28) benign(0.041) TCGA-PE-A5DE-01 X 71428226 71428226 G A ERCC6L Nonsense_Mutation p.Q131* 0.12 TCGA-PE-A5DE-01 X 80532647 80532647 C T SH3BGRL Silent p.F70F 0.16 TCGA-PE-A5DE-01 X 83389807 83389807 C T RPS6KA6 Missense_Mutation p.G210E 0.16 deleterious(0) probably_damaging(1) TCGA-PE-A5DE-01 X 86082772 86082772 G C DACH2 Intron 0.13 TCGA-PE-A5DE-01 X 92965537 92965537 G C FAM133A 3'UTR 0.12 TCGA-PL-A8LV-01 10 120445657 120445657 A G CACUL1 Missense_Mutation p.S365P 0.17 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-PL-A8LV-01 10 1406032 1406032 G A ADARB2 Missense_Mutation p.R90W 0.20 deleterious(0.01) possibly_damaging(0.794) TCGA-PL-A8LV-01 10 37431048 37431048 G T ANKRD30A Missense_Mutation p.W352L 0.28 tolerated(0.83) possibly_damaging(0.641) TCGA-PL-A8LV-01 10 74033949 74033949 C G DDIT4 5'UTR 0.38 TCGA-PL-A8LV-01 10 77312270 77312270 C A MIR606 RNA 0.11 TCGA-PL-A8LV-01 11 118764394 118764394 C T CXCR5 Silent p.A47A 0.60 TCGA-PL-A8LV-01 11 120322321 120322321 G A ARHGEF12 Silent p.Q648Q 0.27 TCGA-PL-A8LV-01 11 18631336 18631336 C T SPTY2D1 3'UTR 0.58 TCGA-PL-A8LV-01 11 48327773 48327773 C G OR4S1 5'Flank 0.20 TCGA-PL-A8LV-01 11 59224460 59224460 G A OR4D6 Silent p.V9V 0.09 TCGA-PL-A8LV-01 11 5968603 5968603 C A OR56A3 Silent p.L9L 0.46 TCGA-PL-A8LV-01 11 66082772 66082772 C T CD248 Missense_Mutation p.R576K 0.33 tolerated(0.83) benign(0.001) TCGA-PL-A8LV-01 11 66436285 66436285 G C RBM4B Missense_Mutation p.S297C 0.41 deleterious(0) possibly_damaging(0.599) TCGA-PL-A8LV-01 11 74082776 74082776 A G PGM2L1 Silent p.T122T 0.17 TCGA-PL-A8LV-01 12 105464522 105464522 C - ALDH1L2 Frame_Shift_Del p.G85Afs*18 0.34 TCGA-PL-A8LV-01 12 107280597 107280597 G C RIC8B 3'Flank 0.38 TCGA-PL-A8LV-01 12 121206293 121206293 T G SPPL3 Splice_Site p.X204_splice 0.69 TCGA-PL-A8LV-01 12 48165980 48165980 C A SLC48A1 5'Flank 0.12 TCGA-PL-A8LV-01 12 52963741 52963741 G A KRT74 Missense_Mutation p.R346W 0.52 deleterious(0.04) benign(0.104) TCGA-PL-A8LV-01 12 56194390 56194390 C G SARNP Missense_Mutation p.E69D 0.21 tolerated(0.35) benign(0.004) TCGA-PL-A8LV-01 12 66260703 66260703 A G RP11-366L20.2 Missense_Mutation p.L100S 0.52 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-PL-A8LV-01 12 69979252 69979252 C G CCT2 5'UTR 0.25 TCGA-PL-A8LV-01 12 88500472 88500472 C G CEP290 Missense_Mutation p.G933R 0.59 probably_damaging(1) TCGA-PL-A8LV-01 12 9259105 9259105 T C A2M Missense_Mutation p.I326V 0.24 tolerated(0.48) benign(0.002) TCGA-PL-A8LV-01 12 9980128 9980128 A T KLRF1 5'UTR 0.59 TCGA-PL-A8LV-01 13 103443663 103443663 C G KDELC1 Missense_Mutation p.D264H 0.38 deleterious(0) probably_damaging(0.995) TCGA-PL-A8LV-01 13 113508756 113508756 G C ATP11A Missense_Mutation p.E719Q 0.22 tolerated(0.07) benign(0.334) TCGA-PL-A8LV-01 13 114138204 114138204 C T DCUN1D2 Silent p.R57R 0.08 TCGA-PL-A8LV-01 13 99037019 99037019 G C FARP1 Missense_Mutation p.E178Q 0.15 tolerated(0.24) benign(0.068) TCGA-PL-A8LV-01 14 31790773 31790773 G A HEATR5A Missense_Mutation p.R1301W 0.37 deleterious(0) probably_damaging(0.949) TCGA-PL-A8LV-01 14 33147576 33147576 C G AKAP6 Silent p.L930L 0.12 TCGA-PL-A8LV-01 14 33292164 33292164 T C AKAP6 Silent p.N1715N 0.21 TCGA-PL-A8LV-01 14 51132086 51132086 A G SAV1 Missense_Mutation p.F116L 0.21 tolerated(0.48) benign(0.007) TCGA-PL-A8LV-01 14 64940288 64940288 A C AKAP5 3'UTR 0.17 TCGA-PL-A8LV-01 14 71577849 71577849 G C PCNX 3'UTR 0.18 TCGA-PL-A8LV-01 15 63940339 63940339 C G HERC1 Missense_Mutation p.D3603H 0.31 probably_damaging(0.999) TCGA-PL-A8LV-01 15 66618331 66618331 C G DIS3L Missense_Mutation p.F610L 0.30 tolerated(1) benign(0.001) TCGA-PL-A8LV-01 15 74632023 74632023 T G CYP11A1 Silent p.A354A 0.56 TCGA-PL-A8LV-01 15 78782830 78782830 T G IREB2 Missense_Mutation p.S715A 0.54 deleterious(0) possibly_damaging(0.557) TCGA-PL-A8LV-01 15 89807196 89807196 C T FANCI Missense_Mutation p.S203F 0.42 deleterious(0.04) benign(0.02) TCGA-PL-A8LV-01 15 89807750 89807750 C T FANCI Intron 0.32 TCGA-PL-A8LV-01 16 2834884 2834884 C T PRSS33 Intron 0.29 TCGA-PL-A8LV-01 16 614348 614348 A T C16orf11 Missense_Mutation p.S352C 0.20 deleterious(0.04) possibly_damaging(0.789) TCGA-PL-A8LV-01 17 26901165 26901165 C T ALDOC Missense_Mutation p.C240Y 0.33 tolerated(0.06) probably_damaging(0.947) TCGA-PL-A8LV-01 17 26965341 26965341 G T KIAA0100 Missense_Mutation p.Q481K 0.67 tolerated(0.05) probably_damaging(0.91) TCGA-PL-A8LV-01 17 27047830 27047830 C T RPL23A Missense_Mutation p.P44L 0.15 tolerated(0.15) benign(0.443) TCGA-PL-A8LV-01 17 29758863 29758863 C T RAB11FIP4 Silent p.N64N 0.41 TCGA-PL-A8LV-01 17 54672893 54672893 G C NOG 3'UTR 0.13 TCGA-PL-A8LV-01 17 70122515 70122516 - GTATATTA SOX9 3'UTR 0.34 TCGA-PL-A8LV-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-PL-A8LV-01 18 21402284 21402284 C G LAMA3 Nonsense_Mutation p.Y791* 0.53 TCGA-PL-A8LV-01 19 12878262 12878262 G C HOOK2 Silent p.P440P 0.23 TCGA-PL-A8LV-01 19 17945963 17945963 C G JAK3 Missense_Mutation p.G659A 0.11 deleterious(0.01) probably_damaging(1) TCGA-PL-A8LV-01 19 36673902 36673902 C G ZNF565 Silent p.L322L 0.38 TCGA-PL-A8LV-01 19 39088081 39088081 G A MAP4K1 Intron 0.41 TCGA-PL-A8LV-01 19 45397132 45397132 C T TOMM40 Silent p.A177A 0.25 TCGA-PL-A8LV-01 19 54671912 54671912 A G TMC4 Missense_Mutation p.L267P 0.24 deleterious(0) probably_damaging(0.956) TCGA-PL-A8LV-01 19 57890229 57890229 C T ZNF547 3'UTR 0.33 TCGA-PL-A8LV-01 19 5951417 5951417 C G RANBP3 Missense_Mutation p.R90P 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.604) TCGA-PL-A8LV-01 1 10438305 10438305 C G KIF1B 3'Flank 0.29 TCGA-PL-A8LV-01 1 151823663 151823663 T C THEM5 Silent p.K110K 0.31 TCGA-PL-A8LV-01 1 151861790 151861790 C G THEM4 Missense_Mutation p.D116H 0.30 deleterious(0) possibly_damaging(0.547) TCGA-PL-A8LV-01 1 15382679 15382679 G T KAZN Missense_Mutation p.E273D 0.25 deleterious(0.02) benign(0.078) TCGA-PL-A8LV-01 1 153921006 153921006 G C CRTC2 Missense_Mutation p.P597A 0.25 tolerated(0.07) benign(0.001) TCGA-PL-A8LV-01 1 155735066 155735066 C G GON4L Missense_Mutation p.G1400R 0.47 deleterious_low_confidence(0.05) benign(0.255) TCGA-PL-A8LV-01 1 155887336 155887336 G C KIAA0907 Missense_Mutation p.T465R 0.14 tolerated(0.16) probably_damaging(0.986) TCGA-PL-A8LV-01 1 156539220 156539220 T C IQGAP3 Missense_Mutation p.R25G 0.22 deleterious(0) probably_damaging(0.998) TCGA-PL-A8LV-01 1 156568212 156568212 C A GPATCH4 Splice_Site p.X56_splice 0.33 TCGA-PL-A8LV-01 1 160209741 160209741 C G DCAF8 Missense_Mutation p.A157P 0.14 deleterious(0.02) possibly_damaging(0.866) TCGA-PL-A8LV-01 1 17313693 17313693 G A ATP13A2 Silent p.L977L 0.19 TCGA-PL-A8LV-01 1 203036853 203036853 G C PPFIA4 Silent p.L521L 0.10 TCGA-PL-A8LV-01 1 203798636 203798636 C T ZC3H11A Missense_Mutation p.S119L 0.21 tolerated(0.06) benign(0.02) TCGA-PL-A8LV-01 1 228470815 228470815 C T OBSCN Missense_Mutation p.P3285L 0.13 benign(0.053) TCGA-PL-A8LV-01 1 43827974 43827974 G A CDC20 Missense_Mutation p.E438K 0.26 deleterious(0) possibly_damaging(0.673) TCGA-PL-A8LV-01 1 46714018 46714018 G A RAD54L 5'UTR 0.14 TCGA-PL-A8LV-01 1 92769531 92769531 T C RPAP2 Intron 0.31 TCGA-PL-A8LV-01 20 1629810 1629810 G C SIRPG Missense_Mutation p.I106M 0.22 deleterious(0) probably_damaging(0.997) TCGA-PL-A8LV-01 20 33857651 33857651 G A MMP24 Missense_Mutation p.R428H 0.60 tolerated(0.29) benign(0.003) TCGA-PL-A8LV-01 20 3766048 3766048 G C CENPB Silent p.L361L 0.43 TCGA-PL-A8LV-01 20 46266389 46266389 C G NCOA3 Intron 0.52 TCGA-PL-A8LV-01 20 60503364 60503364 G A CDH4 Missense_Mutation p.A630T 0.12 tolerated(0.25) benign(0.003) TCGA-PL-A8LV-01 20 60756613 60756613 T C SS18L1 3'UTR 0.17 TCGA-PL-A8LV-01 21 40800278 40800278 T G LCA5L Missense_Mutation p.S48R 0.23 deleterious(0) probably_damaging(0.992) TCGA-PL-A8LV-01 22 22988845 22988845 C G GGTLC2 Silent p.L10L 0.39 TCGA-PL-A8LV-01 22 31487738 31487738 A C SMTN Missense_Mutation p.N513H 0.22 tolerated(0.08) benign(0.212) TCGA-PL-A8LV-01 22 37678493 37678493 G C CYTH4 5'UTR 0.21 TCGA-PL-A8LV-01 22 39439036 39439036 G A APOBEC3F Missense_Mutation p.E38K 0.34 tolerated(0.15) benign(0.265) TCGA-PL-A8LV-01 22 41523643 41523643 C - EP300 Frame_Shift_Del p.R354Gfs*8 0.38 TCGA-PL-A8LV-01 22 45309739 45309739 T C PHF21B Missense_Mutation p.K265R 0.24 tolerated(0.11) benign(0.008) TCGA-PL-A8LV-01 22 51064092 51064092 G T ARSA Silent p.L375L 0.14 TCGA-PL-A8LV-01 2 178087486 178087486 C T HNRNPA3 3'Flank 0.40 TCGA-PL-A8LV-01 2 19551399 19551399 G A OSR1 3'Flank 0.24 TCGA-PL-A8LV-01 2 219878733 219878733 G A CCDC108 Silent p.D1212D 0.21 TCGA-PL-A8LV-01 2 223919302 223919302 C T KCNE4 3'UTR 0.11 TCGA-PL-A8LV-01 2 242092959 242092959 G A PPP1R7 Missense_Mutation p.A41T 0.14 tolerated(0.35) unknown(0) TCGA-PL-A8LV-01 2 27804119 27804119 C A C2orf16 Missense_Mutation p.N1560K 0.15 deleterious(0.01) unknown(0) TCGA-PL-A8LV-01 2 36986202 36986202 G A VIT Intron 0.24 TCGA-PL-A8LV-01 2 68805110 68805110 G A APLF Missense_Mutation p.E498K 0.25 deleterious(0.02) probably_damaging(0.958) TCGA-PL-A8LV-01 2 86344236 86344236 C G PTCD3 Nonsense_Mutation p.S123* 0.07 TCGA-PL-A8LV-01 2 98428913 98428913 C G TMEM131 Missense_Mutation p.E612Q 0.09 tolerated(0.8) benign(0.015) TCGA-PL-A8LV-01 3 111797650 111797650 T C TMPRSS7 Silent p.C636C 0.33 TCGA-PL-A8LV-01 3 138763059 138763059 A G PRR23C Missense_Mutation p.V135A 0.17 deleterious(0.02) possibly_damaging(0.761) TCGA-PL-A8LV-01 3 146309625 146309625 G A PLSCR5 Missense_Mutation p.T166M 0.10 tolerated(0.18) possibly_damaging(0.475) TCGA-PL-A8LV-01 3 148773185 148773185 C A HLTF Missense_Mutation p.A460S 0.32 tolerated(0.71) benign(0.026) TCGA-PL-A8LV-01 3 186507930 186507930 C T RFC4 Splice_Site p.X332_splice 0.10 TCGA-PL-A8LV-01 3 195516639 195516639 T A MUC4 Missense_Mutation p.R604S 0.18 unknown(0) TCGA-PL-A8LV-01 3 197616384 197616384 T C IQCG 3'UTR 0.22 TCGA-PL-A8LV-01 3 50155851 50155851 C A RBM5 Silent p.R804R 0.10 TCGA-PL-A8LV-01 3 52722138 52722138 G C GNL3 Missense_Mutation p.C113S 0.33 tolerated(0.86) benign(0.001) TCGA-PL-A8LV-01 3 57443630 57443630 C G DNAH12 Missense_Mutation p.A1029P 0.06 deleterious(0) possibly_damaging(0.887) TCGA-PL-A8LV-01 3 58517529 58517529 T G ACOX2 Silent p.S198S 0.67 TCGA-PL-A8LV-01 4 39123569 39123569 T C KLHL5 3'Flank 0.43 TCGA-PL-A8LV-01 4 41988272 41988273 CT - DCAF4L1 3'UTR 0.36 TCGA-PL-A8LV-01 4 53463895 53463895 G A USP46 Nonsense_Mutation p.Q338* 0.28 TCGA-PL-A8LV-01 4 76797728 76797728 G C PPEF2 Missense_Mutation p.I344M 0.61 tolerated(0.3) benign(0.274) TCGA-PL-A8LV-01 5 156895780 156895780 A G NIPAL4 Missense_Mutation p.T191A 0.17 deleterious(0.01) benign(0.371) TCGA-PL-A8LV-01 5 179740821 179740821 C A GFPT2 Missense_Mutation p.V473L 0.24 deleterious(0) possibly_damaging(0.783) TCGA-PL-A8LV-01 5 179757813 179757813 C T GFPT2 Missense_Mutation p.E141K 0.18 tolerated(0.09) benign(0.192) TCGA-PL-A8LV-01 5 52161623 52161623 G C ITGA1 Missense_Mutation p.R199T 0.52 tolerated(0.19) benign(0.021) TCGA-PL-A8LV-01 5 55185924 55185924 G A IL31RA Missense_Mutation p.D245N 0.48 tolerated(0.32) benign(0.013) TCGA-PL-A8LV-01 5 72332994 72332994 C - FCHO2 Frame_Shift_Del p.F290Lfs*24 0.09 TCGA-PL-A8LV-01 5 78329069 78329069 G A DMGDH Silent p.N452N 0.39 TCGA-PL-A8LV-01 6 109954403 109954403 G AA AK9 Frame_Shift_Ins p.P353Ffs*10 0.36 TCGA-PL-A8LV-01 6 119525974 119525974 C G MAN1A1 Missense_Mutation p.E356Q 0.23 deleterious(0) probably_damaging(1) TCGA-PL-A8LV-01 6 32154148 32154148 G A PBX2 3'UTR 0.18 TCGA-PL-A8LV-01 6 46849316 46849316 C G GPR116 Silent p.V230V 0.25 TCGA-PL-A8LV-01 6 84896242 84896242 G T KIAA1009 Missense_Mutation p.N403K 0.24 tolerated(0.08) benign(0.015) TCGA-PL-A8LV-01 7 100676439 100676439 T C MUC17 Missense_Mutation p.L581P 0.16 benign(0.026) TCGA-PL-A8LV-01 7 101256991 101256991 C T MYL10 Splice_Site p.X178_splice 0.10 TCGA-PL-A8LV-01 7 137560094 137560094 A G CREB3L2 3'UTR 0.27 TCGA-PL-A8LV-01 7 148495743 148495743 G C CUL1 Missense_Mutation p.E704Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-PL-A8LV-01 7 148802099 148802099 G T ZNF425 Missense_Mutation p.N288K 0.41 tolerated(1) benign(0.017) TCGA-PL-A8LV-01 7 148987056 148987056 C T ZNF783 3'Flank 0.39 TCGA-PL-A8LV-01 7 155101665 155101675 ACGCACACACA - INSIG1 3'UTR 0.28 TCGA-PL-A8LV-01 7 15651186 15651186 A T MEOX2 3'UTR 0.21 TCGA-PL-A8LV-01 7 36580087 36580087 G A AOAH Missense_Mutation p.P382S 0.08 tolerated(0.57) benign(0.019) TCGA-PL-A8LV-01 7 55980337 55980337 C A ZNF713 5'UTR 0.68 TCGA-PL-A8LV-01 7 99042456 99042456 G A CPSF4 Missense_Mutation p.G50S 0.14 tolerated(0.71) benign(0.002) TCGA-PL-A8LV-01 8 120257418 120257418 C G MAL2 3'UTR 0.07 TCGA-PL-A8LV-01 8 145555297 145555297 G T SCRT1 3'UTR 0.29 TCGA-PL-A8LV-01 8 22853373 22853373 G C RHOBTB2 Intron 0.12 TCGA-PL-A8LV-01 8 57075402 57075402 C T PLAG1 3'UTR 0.29 TCGA-PL-A8LV-01 8 57219251 57219251 C G SDR16C5 Missense_Mutation p.E232Q 0.12 tolerated(0.06) possibly_damaging(0.548) TCGA-PL-A8LV-01 9 113212399 113212399 T A SVEP1 Missense_Mutation p.E1348V 0.32 probably_damaging(0.955) TCGA-PL-A8LV-01 9 130925936 130925936 G C C9orf16 3'UTR 0.52 TCGA-PL-A8LV-01 9 132620387 132620387 C T USP20 Missense_Mutation p.A65V 0.75 deleterious(0.04) possibly_damaging(0.777) TCGA-PL-A8LV-01 9 39177330 39177330 C G CNTNAP3 Missense_Mutation p.L304F 0.50 deleterious(0.01) possibly_damaging(0.9) TCGA-PL-A8LV-01 9 71509405 71509405 A G PIP5K1B Missense_Mutation p.T208A 0.08 deleterious(0) possibly_damaging(0.654) TCGA-PL-A8LV-01 9 79322372 79322372 T A PRUNE2 Missense_Mutation p.R1606S 0.27 tolerated(0.42) benign(0.017) TCGA-PL-A8LV-01 9 80335085 80335085 C G GNAQ 3'UTR 0.47 TCGA-PL-A8LV-01 X 100653778 100653778 C T GLA Missense_Mutation p.D266N 0.15 deleterious(0) probably_damaging(1) TCGA-PL-A8LV-01 X 101572287 101572287 G T NXF2 Intron 0.17 TCGA-PL-A8LV-01 X 104463955 104463955 A G TEX13A Silent p.P307P 0.08 TCGA-PL-A8LV-01 X 117032836 117032836 G T KLHL13 3'UTR 0.17 TCGA-PL-A8LV-01 X 119504641 119504641 C T ATP1B4 Silent p.L134L 0.14 TCGA-PL-A8LV-01 X 135957265 135957265 C G RBMX Missense_Mutation p.R282T 0.16 deleterious(0) probably_damaging(0.996) TCGA-PL-A8LV-01 X 13798019 13798019 C A GPM6B Missense_Mutation p.W205C 0.35 deleterious(0) probably_damaging(0.993) TCGA-PL-A8LV-01 X 152083284 152083284 G A ZNF185 Missense_Mutation p.R22H 0.44 deleterious(0) probably_damaging(0.999) TCGA-PL-A8LV-01 X 153196302 153196302 T A NAA10 Splice_Site p.X129_splice 0.21 TCGA-PL-A8LV-01 X 48979060 48979060 C A GPKOW Missense_Mutation p.Q81H 0.32 tolerated(0.09) possibly_damaging(0.62) TCGA-PL-A8LV-01 X 70794611 70794611 T A OGT 3'UTR 0.13 TCGA-PL-A8LV-01 X 71401673 71401673 G A PIN4 Missense_Mutation p.G38E 0.25 deleterious(0.04) probably_damaging(0.969) TCGA-PL-A8LX-01 10 134898430 134898430 G A GPR123 5'Flank 0.42 TCGA-PL-A8LX-01 10 50531359 50531359 C T C10orf71 Missense_Mutation p.P257S 0.34 tolerated(0.21) benign(0.22) TCGA-PL-A8LX-01 11 128786393 128786393 T C KCNJ5 Missense_Mutation p.F343L 0.81 tolerated(0.63) possibly_damaging(0.858) TCGA-PL-A8LX-01 11 76061194 76061194 A C PRKRIR 3'UTR 0.21 TCGA-PL-A8LX-01 12 56631453 56631453 G A SLC39A5 Missense_Mutation p.G521S 0.29 tolerated(0.89) probably_damaging(0.961) TCGA-PL-A8LX-01 12 76763588 76763588 A T OSBPL8 Missense_Mutation p.V690E 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-PL-A8LX-01 14 75230680 75230681 - T YLPM1 Frame_Shift_Ins p.Y164Lfs*78 0.45 TCGA-PL-A8LX-01 14 95085652 95085652 G A SERPINA3 Missense_Mutation p.R255Q 0.09 deleterious(0.02) possibly_damaging(0.673) TCGA-PL-A8LX-01 16 68094978 68094978 G C DUS2 Missense_Mutation p.G127R 0.36 deleterious(0) probably_damaging(1) TCGA-PL-A8LX-01 16 88925198 88925198 G C TRAPPC2L Missense_Mutation p.V69L 0.34 tolerated(0.1) benign(0.013) TCGA-PL-A8LX-01 17 48762163 48762163 C T ABCC3 Missense_Mutation p.H1403Y 0.42 deleterious(0) probably_damaging(0.984) TCGA-PL-A8LX-01 17 60021750 60021750 A T MED13 3'UTR 0.17 TCGA-PL-A8LX-01 17 7475155 7475155 T A SENP3 3'UTR 0.09 TCGA-PL-A8LX-01 17 78444589 78444589 C T NPTX1 3'UTR 0.22 TCGA-PL-A8LX-01 17 79082992 79082993 CT - BAIAP2 Intron 0.11 TCGA-PL-A8LX-01 17 80037241 80037241 G C FASN Missense_Mutation p.L2464V 0.21 deleterious(0.03) benign(0.289) TCGA-PL-A8LX-01 18 6993675 6993675 G A LAMA1 Missense_Mutation p.A1658V 0.12 tolerated(0.29) benign(0.013) TCGA-PL-A8LX-01 19 40539264 40539264 C T ZNF780B 3'UTR 0.21 TCGA-PL-A8LX-01 19 49813680 49813680 C T SLC6A16 Missense_Mutation p.R168H 0.24 tolerated(0.28) benign(0.055) TCGA-PL-A8LX-01 19 57089155 57089155 A T ZNF470 Missense_Mutation p.Y453F 0.24 tolerated(0.11) probably_damaging(0.986) TCGA-PL-A8LX-01 1 153635256 153635256 T C ILF2 Missense_Mutation p.T313A 0.26 deleterious(0.04) benign(0.206) TCGA-PL-A8LX-01 1 36299639 36299639 C T AGO4 Silent p.P476P 0.22 TCGA-PL-A8LX-01 1 40148134 40148134 G A HPCAL4 3'UTR 0.45 TCGA-PL-A8LX-01 1 60381625 60381625 T C CYP2J2 Missense_Mutation p.I120V 0.33 tolerated(0.77) benign(0.009) TCGA-PL-A8LX-01 1 68955172 68955172 C T DEPDC1 Missense_Mutation p.R145H 0.34 tolerated(0.06) benign(0.028) TCGA-PL-A8LX-01 20 2641367 2641367 C A IDH3B Silent p.G169G 0.11 TCGA-PL-A8LX-01 20 31583513 31583513 C T SUN5 Missense_Mutation p.R149Q 0.08 tolerated(0.15) benign(0.067) TCGA-PL-A8LX-01 20 3562783 3562783 C T ATRN Missense_Mutation p.S849F 0.39 tolerated(0.58) benign(0.003) TCGA-PL-A8LX-01 20 3562831 3562831 C A ATRN Missense_Mutation p.S865Y 0.44 deleterious(0) probably_damaging(0.987) TCGA-PL-A8LX-01 20 3562832 3562832 C T ATRN Silent p.S865S 0.43 TCGA-PL-A8LX-01 20 44171492 44171492 G A EPPIN Missense_Mutation p.P80S 0.28 deleterious(0.05) probably_damaging(0.989) TCGA-PL-A8LX-01 21 43411304 43411304 C G ZBTB21 Silent p.S967S 0.50 TCGA-PL-A8LX-01 22 29191285 29191286 TG - XBP1 3'UTR 0.26 TCGA-PL-A8LX-01 2 198436845 198436845 G T RFTN2 Missense_Mutation p.L465M 0.40 tolerated(0.07) possibly_damaging(0.627) TCGA-PL-A8LX-01 2 5838557 5838557 A T SOX11 3'UTR 0.20 TCGA-PL-A8LX-01 2 87016510 87016510 C T CD8A Silent p.A187A 0.06 TCGA-PL-A8LX-01 3 185826253 185826253 A G ETV5 Intron 0.35 TCGA-PL-A8LX-01 5 115782176 115782176 G T SEMA6A 3'UTR 0.07 TCGA-PL-A8LX-01 5 139889683 139889683 G A ANKHD1 Missense_Mutation p.V1341M 0.26 possibly_damaging(0.86) TCGA-PL-A8LX-01 5 41057431 41057431 A T MROH2B Missense_Mutation p.L263H 0.54 tolerated(0.12) benign(0.173) TCGA-PL-A8LX-01 6 133015259 133015259 A G VNN1 Missense_Mutation p.V135A 0.41 deleterious(0) possibly_damaging(0.582) TCGA-PL-A8LX-01 6 29692916 29692916 G A HLA-F Missense_Mutation p.R240Q 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.729) TCGA-PL-A8LX-01 6 7602940 7602940 C T SNRNP48 Missense_Mutation p.A227V 0.17 deleterious(0) probably_damaging(0.989) TCGA-PL-A8LX-01 6 88074681 88074681 A G C6orf163 Missense_Mutation p.K186R 0.36 tolerated(0.06) possibly_damaging(0.673) TCGA-PL-A8LX-01 7 102065833 102065833 T C PRKRIP1 3'UTR 0.34 TCGA-PL-A8LX-01 7 128452207 128452207 C G CCDC136 Silent p.T794T 0.11 TCGA-PL-A8LX-01 7 151874067 151874068 - T KMT2C Frame_Shift_Ins p.T2824Nfs*9 0.27 TCGA-PL-A8LX-01 7 151891600 151891600 G A KMT2C Nonsense_Mutation p.Q1478* 0.26 TCGA-PL-A8LX-01 7 48327660 48327660 G A ABCA13 Silent p.A2980A 0.44 TCGA-PL-A8LX-01 7 75689702 75689702 C G MDH2 Silent p.T147T 0.31 TCGA-PL-A8LX-01 8 103271262 103271262 T C UBR5 Silent p.E2684E 0.10 TCGA-PL-A8LX-01 9 126125202 126125202 C T CRB2 Silent p.T51T 0.13 TCGA-PL-A8LX-01 X 64725230 64725230 G A ZC3H12B 3'UTR 0.05 TCGA-PL-A8LY-01 11 65635400 65635400 C T EFEMP2 Missense_Mutation p.V368I 0.11 tolerated(0.95) benign(0.013) TCGA-PL-A8LY-01 12 56755090 56755090 T C APOF Silent p.V300V 0.08 TCGA-PL-A8LY-01 14 105350326 105350326 T C CEP170B Missense_Mutation p.F404L 0.08 deleterious(0) probably_damaging(0.994) TCGA-PL-A8LY-01 18 19424200 19424200 C T MIB1 Missense_Mutation p.P733S 0.08 tolerated(0.97) benign(0.002) TCGA-PL-A8LY-01 19 15770371 15770371 A G CYP4F3 3'UTR 0.20 TCGA-PL-A8LY-01 22 41677559 41677559 C T RANGAP1 5'UTR 0.20 TCGA-PL-A8LY-01 2 279929 279929 A T FAM150B 3'UTR 0.09 TCGA-PL-A8LZ-01 10 126675840 126675840 C T ZRANB1 3'UTR 0.12 TCGA-PL-A8LZ-01 10 5415729 5415729 G A UCN3 Missense_Mutation p.G16R 0.14 deleterious(0.01) probably_damaging(0.953) TCGA-PL-A8LZ-01 10 78646920 78646920 G T KCNMA1 3'Flank 0.22 TCGA-PL-A8LZ-01 11 113604239 113604239 G A ZW10 3'UTR 0.24 TCGA-PL-A8LZ-01 11 17631606 17631606 G A OTOG Missense_Mutation p.E1599K 0.21 benign(0.004) TCGA-PL-A8LZ-01 11 18750354 18750354 A G PTPN5 3'UTR 0.10 TCGA-PL-A8LZ-01 11 36600288 36600288 C A RAG1 3'UTR 0.06 TCGA-PL-A8LZ-01 11 57958529 57958529 T A OR9Q2 Nonsense_Mutation p.C189* 0.14 TCGA-PL-A8LZ-01 11 58170367 58170367 G A OR5B3 Silent p.V172V 0.13 TCGA-PL-A8LZ-01 11 58384258 58384258 G T ZFP91 Missense_Mutation p.R391L 0.08 deleterious(0.02) probably_damaging(0.964) TCGA-PL-A8LZ-01 11 65172385 65172385 G A FRMD8 Silent p.A374A 0.13 TCGA-PL-A8LZ-01 11 66039578 66039578 G T RAB1B Intron 0.21 TCGA-PL-A8LZ-01 11 67132309 67132309 A T CLCF1 3'UTR 0.19 TCGA-PL-A8LZ-01 11 70035452 70035452 G A ANO1 3'UTR 0.21 TCGA-PL-A8LZ-01 11 78387416 78387416 G T TENM4 Missense_Mutation p.S1759R 0.06 deleterious(0.03) benign(0.202) TCGA-PL-A8LZ-01 12 102030460 102030460 C G MYBPC1 Missense_Mutation p.Q182E 0.18 tolerated(0.63) possibly_damaging(0.824) TCGA-PL-A8LZ-01 12 108685855 108685855 G T CMKLR1 Missense_Mutation p.S295R 0.20 tolerated(0.49) benign(0.026) TCGA-PL-A8LZ-01 12 122958654 122958654 G T ZCCHC8 Missense_Mutation p.T505K 0.11 tolerated(0.93) benign(0.054) TCGA-PL-A8LZ-01 12 12300318 12300325 CAATTCGC - LRP6 Frame_Shift_Del p.R1125Kfs*3 0.14 TCGA-PL-A8LZ-01 12 50847374 50847386 TCCTCACCAACAG - LARP4 Frame_Shift_Del p.P313Tfs*32 0.16 TCGA-PL-A8LZ-01 13 30088281 30088281 G A SLC7A1 3'UTR 0.08 TCGA-PL-A8LZ-01 13 77713374 77713374 G A MYCBP2 Missense_Mutation p.S2501F 0.07 probably_damaging(0.965) TCGA-PL-A8LZ-01 13 80094964 80094964 A T NDFIP2 Missense_Mutation p.N114I 0.18 deleterious(0.01) benign(0.211) TCGA-PL-A8LZ-01 13 97999094 97999094 G A MBNL2 Missense_Mutation p.G193R 0.11 deleterious(0.04) possibly_damaging(0.829) TCGA-PL-A8LZ-01 14 20854339 20854339 G T TEP1 Nonsense_Mutation p.C959* 0.29 TCGA-PL-A8LZ-01 14 52741455 52741455 G A PTGDR Missense_Mutation p.A285T 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-PL-A8LZ-01 14 74976510 74976510 G T LTBP2 Missense_Mutation p.N1068K 0.26 deleterious(0) probably_damaging(0.999) TCGA-PL-A8LZ-01 14 75991451 75991451 G A BATF Missense_Mutation p.V30I 0.14 tolerated(0.08) benign(0.299) TCGA-PL-A8LZ-01 14 93125789 93125789 C G RIN3 Nonsense_Mutation p.Y770* 0.24 TCGA-PL-A8LZ-01 15 20495374 20495374 C A CHEK2P2 RNA 0.03 TCGA-PL-A8LZ-01 15 82808108 82808108 G A GOLGA6L17P RNA 0.38 TCGA-PL-A8LZ-01 16 19547705 19547705 T C CCP110 Silent p.Y238Y 0.11 TCGA-PL-A8LZ-01 16 2988187 2988187 C A FLYWCH1 Missense_Mutation p.P593T 0.31 tolerated(0.38) possibly_damaging(0.493) TCGA-PL-A8LZ-01 17 16608636 16608636 T A CCDC144A Missense_Mutation p.V196D 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.804) TCGA-PL-A8LZ-01 17 32953220 32953220 C T TMEM132E Missense_Mutation p.R48C 0.20 deleterious(0) probably_damaging(0.939) TCGA-PL-A8LZ-01 17 43699376 43699376 A C CRHR1-IT1 RNA 0.16 TCGA-PL-A8LZ-01 17 56692609 56692609 C T TEX14 Missense_Mutation p.E295K 0.13 deleterious(0) probably_damaging(1) TCGA-PL-A8LZ-01 17 61667295 61667295 C A DCAF7 3'Flank 0.24 TCGA-PL-A8LZ-01 17 62045523 62045523 G A SCN4A Missense_Mutation p.T299M 0.14 deleterious_low_confidence(0.02) benign(0.304) TCGA-PL-A8LZ-01 17 65362558 65362558 C A PSMD12 Missense_Mutation p.Q26H 0.12 deleterious(0.02) benign(0.289) TCGA-PL-A8LZ-01 17 65979299 65979299 G A BPTF 3'Flank 0.10 TCGA-PL-A8LZ-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.32 tolerated(0.11) benign(0.308) TCGA-PL-A8LZ-01 17 78317796 78317796 C T RNF213 Missense_Mutation p.S2108L 0.08 benign(0) TCGA-PL-A8LZ-01 17 79102286 79102286 C A AATK Missense_Mutation p.R133L 0.10 deleterious(0.02) benign(0.152) TCGA-PL-A8LZ-01 17 80282594 80282594 G A SECTM1 Silent p.D89D 0.09 TCGA-PL-A8LZ-01 18 23596747 23596747 C A SS18 3'UTR 0.17 TCGA-PL-A8LZ-01 19 12868758 12868758 C T BEST2 Missense_Mutation p.A466V 0.11 tolerated_low_confidence(0.27) benign(0.001) TCGA-PL-A8LZ-01 19 18260093 18260093 G C MAST3 Missense_Mutation p.G1163R 0.12 deleterious(0.02) benign(0.097) TCGA-PL-A8LZ-01 19 4216554 4216554 A G ANKRD24 Missense_Mutation p.E466G 0.10 deleterious(0) possibly_damaging(0.727) TCGA-PL-A8LZ-01 19 42593802 42593802 G T POU2F2 3'Flank 0.14 TCGA-PL-A8LZ-01 19 46998762 46998762 G A PNMAL2 5'UTR 0.14 TCGA-PL-A8LZ-01 19 49131429 49131429 G T SPHK2 Missense_Mutation p.G256V 0.10 deleterious(0) probably_damaging(1) TCGA-PL-A8LZ-01 19 49932770 49932770 C A SLC17A7 3'UTR 0.12 TCGA-PL-A8LZ-01 19 55084897 55084897 G C LILRA2 5'UTR 0.16 TCGA-PL-A8LZ-01 19 55179325 55179325 C A LILRB4 Missense_Mutation p.A401D 0.10 deleterious(0.03) probably_damaging(0.941) TCGA-PL-A8LZ-01 19 759955 759955 C A MISP Silent p.P609P 0.26 TCGA-PL-A8LZ-01 19 8397955 8397955 G - KANK3 Frame_Shift_Del p.L627Cfs*43 0.15 TCGA-PL-A8LZ-01 1 150248199 150248199 G C C1orf54 Missense_Mutation p.E60D 0.10 deleterious(0.01) benign(0.013) TCGA-PL-A8LZ-01 1 151236405 151236405 G A PSMD4 Silent p.L61L 0.21 TCGA-PL-A8LZ-01 1 154930264 154930264 G C PYGO2 3'UTR 0.22 TCGA-PL-A8LZ-01 1 156814389 156814389 G A INSRR Missense_Mutation p.L868F 0.06 tolerated(0.71) probably_damaging(0.984) TCGA-PL-A8LZ-01 1 15896569 15896569 G A DNAJC16 3'UTR 0.20 TCGA-PL-A8LZ-01 1 1601166 1601166 C A SLC35E2B Missense_Mutation p.E257D 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-PL-A8LZ-01 1 167038244 167038244 A T GPA33 Silent p.A110A 0.10 TCGA-PL-A8LZ-01 1 18810210 18810210 A G KLHDC7A 3'UTR 0.09 TCGA-PL-A8LZ-01 1 205719363 205719363 G C NUCKS1 5'UTR 0.29 TCGA-PL-A8LZ-01 1 210502292 210502292 C A HHAT 5'UTR 0.15 TCGA-PL-A8LZ-01 1 211545985 211545985 A G TRAF5 Missense_Mutation p.K539E 0.14 deleterious(0) possibly_damaging(0.507) TCGA-PL-A8LZ-01 1 224586726 224586726 C G WDR26 Missense_Mutation p.G477A 0.10 deleterious(0.01) possibly_damaging(0.715) TCGA-PL-A8LZ-01 1 227842903 227842903 G A ZNF678 Missense_Mutation p.E318K 0.27 tolerated(0.06) possibly_damaging(0.879) TCGA-PL-A8LZ-01 1 228347088 228347088 G A GJC2 3'UTR 0.10 TCGA-PL-A8LZ-01 1 247835495 247835495 G T OR13G1 Missense_Mutation p.N283K 0.09 deleterious(0) probably_damaging(0.996) TCGA-PL-A8LZ-01 1 248551300 248551300 C T OR2T6 Missense_Mutation p.R131C 0.09 deleterious(0.03) benign(0.012) TCGA-PL-A8LZ-01 1 47838748 47838748 C T CMPK1 Missense_Mutation p.S147F 0.07 deleterious(0.02) benign(0.104) TCGA-PL-A8LZ-01 1 79002289 79002289 T A PTGFR Missense_Mutation p.W333R 0.10 deleterious(0) probably_damaging(0.955) TCGA-PL-A8LZ-01 20 30422066 30422066 G A MYLK2 3'UTR 0.17 TCGA-PL-A8LZ-01 20 62374503 62374503 C T SLC2A4RG 3'UTR 0.15 TCGA-PL-A8LZ-01 21 34860637 34860637 G A DNAJC28 Missense_Mutation p.P355L 0.16 tolerated(0.17) benign(0.001) TCGA-PL-A8LZ-01 22 21237820 21237820 C A SNAP29 Missense_Mutation p.H194Q 0.10 tolerated(0.26) benign(0.02) TCGA-PL-A8LZ-01 22 23055448 23055448 C G IGLV3-21 Silent p.A37A 0.09 TCGA-PL-A8LZ-01 22 37334034 37334034 C T CSF2RB Silent p.V728V 0.27 TCGA-PL-A8LZ-01 22 37485771 37485771 C T TMPRSS6 Missense_Mutation p.G237E 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-PL-A8LZ-01 2 128341896 128341896 C T MYO7B Missense_Mutation p.R515C 0.33 deleterious(0) probably_damaging(0.93) TCGA-PL-A8LZ-01 2 157183243 157183243 G A NR4A2 Nonsense_Mutation p.R450* 0.11 TCGA-PL-A8LZ-01 2 173339706 173339706 G T ITGA6 Nonsense_Mutation p.E346* 0.06 TCGA-PL-A8LZ-01 2 182430169 182430169 A G CERKL Missense_Mutation p.L249S 0.15 tolerated_low_confidence(0.47) benign(0.01) TCGA-PL-A8LZ-01 2 210598747 210598747 G A MAP2 3'UTR 0.07 TCGA-PL-A8LZ-01 2 238243410 238243410 G A COL6A3 Nonsense_Mutation p.Q3030* 0.24 TCGA-PL-A8LZ-01 2 27845752 27845752 C T ZNF512 3'UTR 0.15 TCGA-PL-A8LZ-01 2 32117156 32117156 C A MEMO1 Missense_Mutation p.S162I 0.10 deleterious(0) possibly_damaging(0.696) TCGA-PL-A8LZ-01 2 89976321 89976321 G A IGKV2D-30 Silent p.R64R 0.11 TCGA-PL-A8LZ-01 3 175455140 175455140 C A NAALADL2 Missense_Mutation p.P648H 0.13 deleterious(0) probably_damaging(1) TCGA-PL-A8LZ-01 3 183863085 183863086 AG - EIF2B5 3'UTR 0.79 TCGA-PL-A8LZ-01 3 184055495 184055495 C A FAM131A Missense_Mutation p.T26K 0.22 deleterious_low_confidence(0.01) benign(0.104) TCGA-PL-A8LZ-01 3 184100320 184100320 T A CHRD Splice_Site p.X281_splice 0.05 TCGA-PL-A8LZ-01 3 192514970 192514970 C A MB21D2 3'UTR 0.10 TCGA-PL-A8LZ-01 3 196730970 196730970 C A MFI2 Missense_Mutation p.D647Y 0.39 deleterious(0.02) possibly_damaging(0.653) TCGA-PL-A8LZ-01 3 38051994 38051994 C A PLCD1 Missense_Mutation p.G305C 0.19 deleterious(0) probably_damaging(0.912) TCGA-PL-A8LZ-01 4 175898202 175898202 T A ADAM29 Missense_Mutation p.F509Y 0.15 deleterious(0) probably_damaging(1) TCGA-PL-A8LZ-01 4 88760835 88760835 A G MEPE Intron 0.07 TCGA-PL-A8LZ-01 4 89397096 89397096 G T HERC5 Missense_Mutation p.M499I 0.27 deleterious(0) benign(0.298) TCGA-PL-A8LZ-01 5 135587392 135587392 C T TRPC7 Silent p.Q508Q 0.17 TCGA-PL-A8LZ-01 5 135692829 135692829 G T TRPC7 Missense_Mutation p.Q83K 0.13 deleterious(0) probably_damaging(0.99) TCGA-PL-A8LZ-01 5 35013131 35013131 C T AGXT2 Silent p.A372A 0.11 TCGA-PL-A8LZ-01 5 58270291 58270291 C A PDE4D 3'UTR 0.13 TCGA-PL-A8LZ-01 6 122753507 122753507 C T HSF2 3'UTR 0.08 TCGA-PL-A8LZ-01 6 149262524 149262524 T C UST Missense_Mutation p.V134A 0.13 tolerated(0.27) benign(0.089) TCGA-PL-A8LZ-01 6 31765590 31765590 C T LSM2 Missense_Mutation p.D78N 0.11 tolerated(0.06) benign(0.124) TCGA-PL-A8LZ-01 6 71276638 71276638 G A C6orf57 5'UTR 0.22 TCGA-PL-A8LZ-01 6 83849754 83849754 T G DOPEY1 Missense_Mutation p.M1719R 0.11 deleterious(0) benign(0.065) TCGA-PL-A8LZ-01 7 100382357 100382357 T C ZAN Silent p.A2244A 0.14 TCGA-PL-A8LZ-01 7 105917501 105917501 C A NAMPT Missense_Mutation p.G61V 0.08 deleterious(0) probably_damaging(1) TCGA-PL-A8LZ-01 7 141920770 141920770 C A RP11-1220K2.2 Missense_Mutation p.S2153R 0.09 benign(0.039) TCGA-PL-A8LZ-01 7 149477487 149477487 C T SSPO RNA 0.09 TCGA-PL-A8LZ-01 7 150164205 150164205 G T GIMAP8 Missense_Mutation p.G140V 0.19 deleterious(0.04) possibly_damaging(0.876) TCGA-PL-A8LZ-01 7 150554090 150554090 C T AOC1 Missense_Mutation p.H178Y 0.12 deleterious(0.01) benign(0.002) TCGA-PL-A8LZ-01 7 150642550 150642550 G A KCNH2 Missense_Mutation p.P1128L 0.15 tolerated_low_confidence(0.47) benign(0.025) TCGA-PL-A8LZ-01 7 151074183 151074183 G A NUB1 Missense_Mutation p.E598K 0.11 deleterious(0) probably_damaging(0.987) TCGA-PL-A8LZ-01 7 50468406 50468406 A C IKZF1 3'UTR 0.28 TCGA-PL-A8LZ-01 7 72413983 72413983 G T POM121 Missense_Mutation p.A886S 0.09 tolerated(0.48) benign(0.003) TCGA-PL-A8LZ-01 7 97858479 97858479 C A TECPR1 Splice_Site p.X761_splice 0.15 TCGA-PL-A8LZ-01 8 10755547 10755547 T C XKR6 Missense_Mutation p.Q614R 0.22 deleterious(0) possibly_damaging(0.724) TCGA-PL-A8LZ-01 8 110476907 110476907 G C PKHD1L1 Missense_Mutation p.V2616L 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-PL-A8LZ-01 8 11667358 11667358 C T FDFT1 Missense_Mutation p.T127M 0.39 tolerated(0.21) probably_damaging(0.985) TCGA-PL-A8LZ-01 8 128428480 128428480 G C POU5F1B Missense_Mutation p.K123N 0.06 deleterious(0.03) probably_damaging(0.912) TCGA-PL-A8LZ-01 8 75765234 75765234 A G PI15 3'UTR 0.32 TCGA-PL-A8LZ-01 9 14748508 14748508 G T FREM1 Missense_Mutation p.P1896H 0.10 deleterious(0) benign(0.014) TCGA-PL-A8LZ-01 9 6013135 6013135 C A RANBP6 Nonsense_Mutation p.E825* 0.21 TCGA-PL-A8LZ-01 X 100667412 100667412 G A HNRNPH2 Missense_Mutation p.D146N 0.06 deleterious(0.03) possibly_damaging(0.817) TCGA-PL-A8LZ-01 X 101395472 101395472 A G TCEAL6 3'UTR 0.09 TCGA-PL-A8LZ-01 X 118809618 118809618 C T SEPT6 Missense_Mutation p.R15Q 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-PL-A8LZ-01 X 122734628 122734628 A T THOC2 3'UTR 0.10 TCGA-PL-A8LZ-01 X 128893177 128893177 C T XPNPEP2 Silent p.T463T 0.28 TCGA-PL-A8LZ-01 X 149638343 149638343 C A MAMLD1 Silent p.I141I 0.21 TCGA-PL-A8LZ-01 X 149680774 149680774 C A MAMLD1 Missense_Mutation p.P810T 0.11 tolerated(0.14) benign(0.003) TCGA-PL-A8LZ-01 X 48761856 48761856 C A SLC35A2 Intron 0.09 TCGA-PL-A8LZ-01 X 49062130 49062130 G C CACNA1F Silent p.T1883T 0.24 TCGA-PL-A8LZ-01 X 50130629 50130629 C T DGKK RNA 0.12 TCGA-PL-A8LZ-01 X 69724367 69724367 C T DLG3 3'UTR 0.25 TCGA-PL-A8LZ-01 X 8767024 8767024 G C FAM9A Missense_Mutation p.P68R 0.12 tolerated_low_confidence(0.86) probably_damaging(0.985) TCGA-S3-A6ZF-01 10 118390753 118390753 C T PNLIPRP2 Silent p.F234F 0.26 TCGA-S3-A6ZF-01 10 98281457 98281458 - A TM9SF3 3'UTR 0.13 TCGA-S3-A6ZF-01 12 108589595 108589595 C T WSCD2 5'UTR 0.15 TCGA-S3-A6ZF-01 12 97085061 97085061 A G C12orf55 Silent p.E2079E 0.11 TCGA-S3-A6ZF-01 15 41823361 41823361 G A RPAP1 Missense_Mutation p.T268M 0.29 tolerated(0.11) possibly_damaging(0.714) TCGA-S3-A6ZF-01 15 86313007 86313007 C T KLHL25 Missense_Mutation p.R12Q 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-S3-A6ZF-01 15 96882037 96882037 A G NR2F2 3'UTR 0.13 TCGA-S3-A6ZF-01 16 50258816 50258836 TAATTAGAGTAACAGATGAAG - PAPD5 In_Frame_Del p.I494_V500del 0.23 TCGA-S3-A6ZF-01 17 39383313 39383313 G A KRTAP9-2 Missense_Mutation p.C136Y 0.13 deleterious(0.05) benign(0.336) TCGA-S3-A6ZF-01 17 39914010 39914010 G C JUP Missense_Mutation p.I600M 0.24 deleterious(0.04) probably_damaging(0.975) TCGA-S3-A6ZF-01 17 60345580 60345580 C T TBC1D3P2 RNA 0.28 TCGA-S3-A6ZF-01 17 79278331 79278331 G A LINC00482 RNA 0.11 TCGA-S3-A6ZF-01 18 56997906 56997906 T A LMAN1 3'UTR 0.29 TCGA-S3-A6ZF-01 18 72103919 72103919 G A FAM69C Silent p.S359S 0.29 TCGA-S3-A6ZF-01 19 10334627 10334627 C T S1PR2 Missense_Mutation p.G319R 0.25 tolerated(0.19) benign(0.01) TCGA-S3-A6ZF-01 19 15122208 15122208 G A CCDC105 Splice_Site p.X190_splice 0.33 TCGA-S3-A6ZF-01 19 35597185 35597185 G A AC020907.1 5'UTR 0.16 TCGA-S3-A6ZF-01 19 43679527 43679527 C T PSG5 Silent p.P268P 0.26 TCGA-S3-A6ZF-01 19 57286542 57286542 A G ZIM2 Silent p.Y366Y 0.06 TCGA-S3-A6ZF-01 19 8386248 8386248 G A NDUFA7 5'UTR 0.68 TCGA-S3-A6ZF-01 1 158584096 158584096 C T SPTA1 Silent p.K2263K 0.15 TCGA-S3-A6ZF-01 1 159409779 159409779 G T OR10J1 Silent p.L77L 0.53 TCGA-S3-A6ZF-01 1 169529881 169529881 G A F5 Missense_Mutation p.P166L 0.19 deleterious(0) probably_damaging(0.932) TCGA-S3-A6ZF-01 1 220804452 220804452 G A MARK1 Missense_Mutation p.D329N 0.49 deleterious(0.01) possibly_damaging(0.841) TCGA-S3-A6ZF-01 1 32628905 32628905 C G KPNA6 Missense_Mutation p.I327M 0.30 tolerated(0.38) benign(0.034) TCGA-S3-A6ZF-01 1 65878633 65878633 C T DNAJC6 Silent p.Y946Y 0.21 TCGA-S3-A6ZF-01 22 39528552 39528552 T A CBX7 3'UTR 0.21 TCGA-S3-A6ZF-01 2 25059864 25059864 G C ADCY3 Silent p.L528L 0.10 TCGA-S3-A6ZF-01 3 119900041 119900041 G C GPR156 Silent p.V288V 0.14 TCGA-S3-A6ZF-01 3 123356964 123356964 C T MYLK Missense_Mutation p.G1639S 0.17 tolerated(0.47) benign(0.249) TCGA-S3-A6ZF-01 3 138176425 138176425 G A ESYT3 Missense_Mutation p.G174S 0.37 deleterious(0) possibly_damaging(0.558) TCGA-S3-A6ZF-01 3 172351848 172351848 T A NCEH1 Missense_Mutation p.K255I 0.12 deleterious(0) probably_damaging(0.997) TCGA-S3-A6ZF-01 4 79240587 79240587 T C FRAS1 Intron 0.20 TCGA-S3-A6ZF-01 5 140741249 140741249 C T PCDHGB2 Missense_Mutation p.A516V 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-S3-A6ZF-01 5 141244724 141244724 C A PCDH1 Missense_Mutation p.G391V 0.25 tolerated(0.09) probably_damaging(0.998) TCGA-S3-A6ZF-01 5 169310625 169310625 C T FAM196B Missense_Mutation p.R93H 0.17 deleterious(0.01) possibly_damaging(0.897) TCGA-S3-A6ZF-01 6 132859697 132859697 C T TAAR9 Missense_Mutation p.T90I 0.21 tolerated(0.1) possibly_damaging(0.663) TCGA-S3-A6ZF-01 6 26189253 26189269 GCTTGGCGCCACCCTTA - HIST1H4D Frame_Shift_Del p.K13Sfs*3 0.17 TCGA-S3-A6ZF-01 6 40996329 40996329 A T UNC5CL Missense_Mutation p.L447Q 0.17 deleterious(0.01) possibly_damaging(0.527) TCGA-S3-A6ZF-01 6 84895133 84895135 CTT - KIAA1009 In_Frame_Del p.E478del 0.28 TCGA-S3-A6ZF-01 7 100358082 100358082 G T ZAN Silent p.R1255R 0.18 TCGA-S3-A6ZF-01 7 129910557 129910557 G T CPA2 Nonsense_Mutation p.E105* 0.23 TCGA-S3-A6ZF-01 7 150764015 150764015 C T SLC4A2 Nonsense_Mutation p.R301* 0.11 TCGA-S3-A6ZF-01 7 2703388 2703388 C G TTYH3 3'UTR 0.14 TCGA-S3-A6ZF-01 7 44259780 44259780 C T CAMK2B Missense_Mutation p.G628R 0.10 tolerated_low_confidence(0.21) probably_damaging(0.989) TCGA-S3-A6ZF-01 8 35588567 35588567 G A UNC5D Silent p.E573E 0.03 TCGA-S3-A6ZF-01 9 136342248 136342248 G A SLC2A6 Missense_Mutation p.A124V 0.27 tolerated(0.21) benign(0.305) TCGA-S3-A6ZF-01 X 106184620 106184620 G C MORC4 3'UTR 0.05 TCGA-S3-A6ZF-01 X 114426028 114426028 G A RBMXL3 Missense_Mutation p.R675H 0.10 tolerated_low_confidence(0.32) benign(0) TCGA-S3-A6ZF-01 X 119570363 119570363 A G LAMP2 Intron 0.13 TCGA-S3-A6ZF-01 X 120009158 120009158 C T CT47B1 Missense_Mutation p.V123M 0.13 tolerated(0.46) benign(0.117) TCGA-S3-A6ZF-01 X 38079968 38079968 C A SRPX Silent p.P26P 0.43 TCGA-S3-A6ZF-01 X 41192807 41192807 C T DDX3X 5'UTR 0.14 TCGA-S3-A6ZF-01 X 55033449 55033449 C T APEX2 Nonsense_Mutation p.Q380* 0.13 TCGA-S3-A6ZF-01 X 71349781 71349781 C T RGAG4 Missense_Mutation p.R537H 0.16 tolerated_low_confidence(0.16) unknown(0) TCGA-S3-A6ZF-01 X 90690649 90690649 T G PABPC5 Missense_Mutation p.L25V 0.19 deleterious(0) probably_damaging(0.999) TCGA-S3-A6ZG-01 10 101689748 101689748 T A DNMBP Intron 0.26 TCGA-S3-A6ZG-01 10 51590100 51590100 T C NCOA4 3'UTR 0.49 TCGA-S3-A6ZG-01 10 81142200 81142200 C T ZCCHC24 3'UTR 0.08 TCGA-S3-A6ZG-01 11 1605978 1605978 C T KRTAP5-1 Missense_Mutation p.G168S 0.12 tolerated_low_confidence(0.17) unknown(0) TCGA-S3-A6ZG-01 11 57265259 57265259 G A SLC43A1 Silent p.Y175Y 0.52 TCGA-S3-A6ZG-01 11 64329894 64329894 T C SLC22A11 Missense_Mutation p.S270P 0.22 deleterious(0) possibly_damaging(0.612) TCGA-S3-A6ZG-01 11 64335177 64335177 C T SLC22A11 Missense_Mutation p.R389W 0.67 deleterious(0.01) benign(0.117) TCGA-S3-A6ZG-01 11 92533462 92533462 G A FAT3 Missense_Mutation p.R2428Q 0.67 benign(0.056) TCGA-S3-A6ZG-01 12 21028385 21028386 - A SLCO1B3 Frame_Shift_Ins p.N317Kfs*45 0.23 TCGA-S3-A6ZG-01 12 56742587 56742587 C T STAT2 Silent p.G526G 0.37 TCGA-S3-A6ZG-01 13 114434239 114434239 G A GRK1 Missense_Mutation p.V373M 0.08 tolerated(0.05) probably_damaging(1) TCGA-S3-A6ZG-01 13 20717176 20717176 G A GJA3 Silent p.F84F 0.26 TCGA-S3-A6ZG-01 13 25378465 25378465 T C RNF17 Silent p.N663N 0.09 TCGA-S3-A6ZG-01 14 105334845 105334845 C T CEP170B Missense_Mutation p.R20W 0.07 deleterious(0) probably_damaging(1) TCGA-S3-A6ZG-01 14 24607978 24607978 G T PSME1 3'UTR 0.26 TCGA-S3-A6ZG-01 14 50092155 50092155 T - DNAAF2 3'UTR 0.27 TCGA-S3-A6ZG-01 14 54423342 54423342 G A BMP4 5'UTR 0.13 TCGA-S3-A6ZG-01 14 77910684 77910684 C T VIPAS39 Missense_Mutation p.V169I 0.32 tolerated(0.39) benign(0.005) TCGA-S3-A6ZG-01 15 79614360 79614360 C T TMED3 Missense_Mutation p.T153M 0.24 tolerated(0.06) benign(0.203) TCGA-S3-A6ZG-01 16 30096455 30096455 C T PPP4C 3'UTR 0.17 TCGA-S3-A6ZG-01 16 31230698 31230698 G A TRIM72 Missense_Mutation p.R192H 0.56 deleterious(0.01) benign(0.01) TCGA-S3-A6ZG-01 16 68846080 68846081 - A CDH1 Frame_Shift_Ins p.G352Rfs*2 0.39 TCGA-S3-A6ZG-01 17 27004817 27004817 C G SUPT6H Missense_Mutation p.P328A 0.36 tolerated(0.21) benign(0.016) TCGA-S3-A6ZG-01 17 9808240 9808240 G A RCVRN Silent p.Y86Y 0.37 TCGA-S3-A6ZG-01 18 40695416 40695416 C T RIT2 Silent p.V23V 0.41 TCGA-S3-A6ZG-01 19 22363262 22363262 T G ZNF676 Missense_Mutation p.K419N 0.48 deleterious(0.01) possibly_damaging(0.475) TCGA-S3-A6ZG-01 19 44778174 44778174 G A ZNF233 Missense_Mutation p.C454Y 0.11 deleterious(0) probably_damaging(1) TCGA-S3-A6ZG-01 1 179620172 179620172 T C TDRD5 Silent p.A657A 0.25 TCGA-S3-A6ZG-01 1 215847687 215847687 A G USH2A Silent p.L4522L 0.11 TCGA-S3-A6ZG-01 1 223959921 223959921 A G CAPN2 Missense_Mutation p.I687V 0.71 tolerated(0.5) benign(0.006) TCGA-S3-A6ZG-01 1 27107517 27107517 C T ARID1A 3'UTR 0.07 TCGA-S3-A6ZG-01 1 44079360 44079360 G A PTPRF Missense_Mutation p.G1349S 0.33 tolerated(0.39) benign(0.024) TCGA-S3-A6ZG-01 1 44457897 44457897 G C CCDC24 Missense_Mutation p.R47P 0.35 tolerated(0.07) possibly_damaging(0.614) TCGA-S3-A6ZG-01 21 34926664 34926664 T C SON Silent p.P1709P 0.09 TCGA-S3-A6ZG-01 2 141083332 141083332 T G LRP1B Missense_Mutation p.Q4113H 0.10 benign(0.216) TCGA-S3-A6ZG-01 2 148685246 148685246 C T ACVR2A 3'UTR 0.10 TCGA-S3-A6ZG-01 2 198949246 198949246 C G PLCL1 Silent p.L335L 0.07 TCGA-S3-A6ZG-01 2 218686631 218686631 C T TNS1 Missense_Mutation p.R1031Q 0.46 tolerated(0.09) benign(0.085) TCGA-S3-A6ZG-01 2 229888853 229888853 G C PID1 3'UTR 0.30 TCGA-S3-A6ZG-01 2 26531694 26531694 G T GPR113 3'Flank 0.31 TCGA-S3-A6ZG-01 2 89399563 89399563 G A IGKV1-16 Missense_Mutation p.A47V 0.30 deleterious(0.01) benign(0.331) TCGA-S3-A6ZG-01 3 111694619 111694619 T G PHLDB2 3'UTR 0.53 TCGA-S3-A6ZG-01 3 23961665 23961665 A - RPL15 3'UTR 0.09 TCGA-S3-A6ZG-01 3 49829381 49829381 A T CDHR4 Missense_Mutation p.L717Q 0.41 tolerated(0.19) benign(0.165) TCGA-S3-A6ZG-01 3 52867429 52867429 C T TMEM110-MUSTN1 Missense_Mutation p.A344T 0.23 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-S3-A6ZG-01 3 57894833 57894833 G A SLMAP Missense_Mutation p.R518Q 0.65 tolerated_low_confidence(0.06) benign(0.267) TCGA-S3-A6ZG-01 3 69038159 69038159 C T EOGT Intron 0.20 TCGA-S3-A6ZG-01 4 100532534 100532534 C T MTTP Missense_Mutation p.S638L 0.23 tolerated(0.27) possibly_damaging(0.514) TCGA-S3-A6ZG-01 4 118006472 118006472 G A TRAM1L1 Silent p.I26I 0.18 TCGA-S3-A6ZG-01 5 161569311 161569311 G A GABRG2 Missense_Mutation p.R344K 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-S3-A6ZG-01 5 16701520 16701520 T G MYO10 Missense_Mutation p.E995A 0.44 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-S3-A6ZG-01 5 174868555 174868555 G A DRD1 3'UTR 0.45 TCGA-S3-A6ZG-01 5 176942947 176942947 A G DDX41 Silent p.D139D 0.28 TCGA-S3-A6ZG-01 6 109764576 109764579 TGTT - SMPD2 Frame_Shift_Del p.F280* 0.46 TCGA-S3-A6ZG-01 6 27792199 27792199 C G HIST1H4J Nonsense_Mutation p.Y99* 0.35 TCGA-S3-A6ZG-01 6 30227434 30227434 G A HCG17 Intron 0.06 TCGA-S3-A6ZG-01 7 55266491 55266491 A T EGFR Missense_Mutation p.E928V 0.28 deleterious(0) probably_damaging(0.999) TCGA-S3-A6ZG-01 8 11163897 11163897 A G MTMR9 Missense_Mutation p.I264V 0.49 tolerated(0.57) benign(0.085) TCGA-S3-A6ZG-01 8 23709007 23709007 G A STC1 Missense_Mutation p.A100V 0.35 deleterious(0.03) possibly_damaging(0.61) TCGA-S3-A6ZG-01 9 84606233 84606233 C T SPATA31D1 Missense_Mutation p.S283L 0.05 deleterious(0) possibly_damaging(0.745) TCGA-S3-A6ZG-01 X 115585489 115585489 G A SLC6A14 Splice_Site p.X429_splice 0.11 TCGA-S3-A6ZG-01 X 152614159 152614159 G A ZNF275 3'UTR 0.14 TCGA-S3-A6ZG-01 X 39932807 39932807 C T BCOR Missense_Mutation p.V598M 0.44 tolerated(0.08) benign(0.313) TCGA-S3-A6ZG-01 X 47483760 47483760 G C CFP Missense_Mutation p.L442V 0.41 tolerated(0.06) benign(0.387) TCGA-S3-A6ZG-01 X 51239215 51239215 C T NUDT11 Missense_Mutation p.E28K 0.03 tolerated(0.08) benign(0.383) TCGA-S3-A6ZH-01 10 115327277 115327277 G T HABP2 Silent p.L33L 0.62 TCGA-S3-A6ZH-01 10 50964842 50964842 A T OGDHL Missense_Mutation p.S119T 0.33 tolerated(0.84) benign(0.009) TCGA-S3-A6ZH-01 10 89692961 89692961 C T PTEN Nonsense_Mutation p.Q149* 0.67 TCGA-S3-A6ZH-01 10 98802688 98802688 C A SLIT1 Missense_Mutation p.V712L 0.71 tolerated(0.24) benign(0.073) TCGA-S3-A6ZH-01 11 64004663 64004663 A C VEGFB Missense_Mutation p.K127Q 0.60 deleterious(0.03) benign(0.111) TCGA-S3-A6ZH-01 11 64004670 64004670 A C VEGFB Missense_Mutation p.K129T 0.59 tolerated(0.19) benign(0.02) TCGA-S3-A6ZH-01 11 64004693 64004693 A C VEGFB Silent p.R137R 0.68 TCGA-S3-A6ZH-01 11 72465978 72465978 G C STARD10 Silent p.G280G 0.38 TCGA-S3-A6ZH-01 12 11174406 11174407 - TG TAS2R19 Frame_Shift_Ins p.Q255Hfs*26 0.31 TCGA-S3-A6ZH-01 12 125834445 125834445 C T TMEM132B Missense_Mutation p.A167V 0.33 deleterious(0.02) benign(0.234) TCGA-S3-A6ZH-01 14 106387054 106387054 G T KIAA0125 Missense_Mutation p.A35S 0.18 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-S3-A6ZH-01 14 33684486 33684486 T G NPAS3 Missense_Mutation p.L80R 0.34 deleterious(0) possibly_damaging(0.766) TCGA-S3-A6ZH-01 14 69262043 69262043 C A ZFP36L1 5'Flank 0.36 TCGA-S3-A6ZH-01 15 51741320 51741320 C T DMXL2 Missense_Mutation p.R2992Q 0.24 deleterious(0) possibly_damaging(0.59) TCGA-S3-A6ZH-01 16 70010732 70010732 G A PDXDC2P RNA 0.09 TCGA-S3-A6ZH-01 16 89986482 89986482 G A MC1R Silent p.T272T 0.18 TCGA-S3-A6ZH-01 17 16664873 16664873 G A CCDC144A Silent p.K1169K 0.15 TCGA-S3-A6ZH-01 17 16664895 16664895 G T CCDC144A Nonsense_Mutation p.E1177* 0.20 TCGA-S3-A6ZH-01 17 16664969 16664969 G C CCDC144A Missense_Mutation p.L1201F 0.28 tolerated(0.08) probably_damaging(0.944) TCGA-S3-A6ZH-01 17 45925368 45925368 C G SP6 Missense_Mutation p.G143A 0.54 tolerated(0.87) benign(0.157) TCGA-S3-A6ZH-01 17 73774213 73774213 A T H3F3B 3'UTR 0.06 TCGA-S3-A6ZH-01 17 79006835 79006835 G A BAIAP2 5'Flank 0.19 TCGA-S3-A6ZH-01 18 20932206 20932206 T - TMEM241 Frame_Shift_Del p.N240Tfs*17 0.19 TCGA-S3-A6ZH-01 1 145588999 145588999 A T NUDT17 Silent p.A83A 0.10 TCGA-S3-A6ZH-01 1 155160975 155160975 A T MUC1 Silent p.S184S 0.79 TCGA-S3-A6ZH-01 1 22186697 22186697 C G HSPG2 Missense_Mutation p.V1663L 0.50 benign(0.349) TCGA-S3-A6ZH-01 1 228467603 228467603 G A OBSCN Missense_Mutation p.R2922Q 0.12 possibly_damaging(0.573) TCGA-S3-A6ZH-01 20 33337350 33337350 G C NCOA6 Missense_Mutation p.T883R 0.39 probably_damaging(0.999) TCGA-S3-A6ZH-01 20 43378848 43378848 C T KCNK15 Missense_Mutation p.T121M 0.31 deleterious(0.01) probably_damaging(1) TCGA-S3-A6ZH-01 20 62326186 62326186 C T RTEL1 Missense_Mutation p.R1092C 0.23 deleterious(0) possibly_damaging(0.888) TCGA-S3-A6ZH-01 22 38610568 38610568 A - MAFF Frame_Shift_Del p.N61Tfs*10 0.11 TCGA-S3-A6ZH-01 2 20648635 20648639 ATTTG - RHOB 3'UTR 0.27 TCGA-S3-A6ZH-01 2 53927580 53927580 C T ASB3 Missense_Mutation p.E391K 0.60 tolerated(0.26) benign(0.038) TCGA-S3-A6ZH-01 2 69267189 69267189 C T ANTXR1 Silent p.L56L 0.19 TCGA-S3-A6ZH-01 3 123983481 123983481 G A KALRN Missense_Mutation p.D132N 0.19 deleterious(0) probably_damaging(0.983) TCGA-S3-A6ZH-01 3 42739728 42739728 C T HHATL Missense_Mutation p.R200H 0.64 tolerated(0.13) benign(0.015) TCGA-S3-A6ZH-01 4 147562573 147562573 G A POU4F2 3'UTR 0.06 TCGA-S3-A6ZH-01 4 151178496 151178496 C T DCLK2 3'UTR 0.26 TCGA-S3-A6ZH-01 6 31636423 31636423 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.A95T 0.27 tolerated(0.13) benign(0.157) TCGA-S3-A6ZH-01 6 35923059 35923059 G A SLC26A8 Missense_Mutation p.A701V 0.22 tolerated(0.16) benign(0.036) TCGA-S3-A6ZH-01 6 39824083 39824083 C T DAAM2 Missense_Mutation p.A2V 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.87) TCGA-S3-A6ZH-01 6 86223583 86223583 C T SNX14 Missense_Mutation p.R863H 0.37 deleterious(0) probably_damaging(1) TCGA-S3-A6ZH-01 7 120389583 120389583 C T KCND2 3'UTR 0.21 TCGA-S3-A6ZH-01 8 113694769 113694769 C T CSMD3 Missense_Mutation p.C860Y 0.47 deleterious(0) probably_damaging(1) TCGA-S3-A6ZH-01 8 37797556 37797556 C T GOT1L1 5'UTR 0.04 TCGA-S3-A6ZH-01 8 39785478 39785478 G A IDO1 Missense_Mutation p.R329Q 0.03 tolerated(0.69) benign(0.001) TCGA-S3-A6ZH-01 8 86057686 86057686 A T LRRCC1 Silent p.T1013T 0.16 TCGA-S3-A6ZH-01 8 86058001 86058001 A G LRRCC1 3'UTR 0.24 TCGA-S3-A6ZH-01 X 5810959 5810959 T A NLGN4X Missense_Mutation p.N784Y 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-S3-AA0Z-01 10 102850288 102850288 T C TLX1NB 5'UTR 0.36 TCGA-S3-AA0Z-01 10 118644910 118644910 G T KIAA1598 3'UTR 0.27 TCGA-S3-AA0Z-01 10 49440323 49440324 - T FRMPD2 Frame_Shift_Ins p.G335Rfs*25 0.42 TCGA-S3-AA0Z-01 10 82394192 82394192 T A SH2D4B Intron 0.36 TCGA-S3-AA0Z-01 11 62520527 62520527 C A ZBTB3 Missense_Mutation p.A254S 0.32 tolerated(1) benign(0.001) TCGA-S3-AA0Z-01 11 65651150 65651150 C T CTSW 3'UTR 0.29 TCGA-S3-AA0Z-01 11 7111516 7111516 C T RBMXL2 Missense_Mutation p.R389W 0.34 tolerated(0.06) benign(0.001) TCGA-S3-AA0Z-01 11 76893520 76893520 G T MYO7A Nonsense_Mutation p.E1054* 0.40 TCGA-S3-AA0Z-01 12 50749404 50749404 G C FAM186A Missense_Mutation p.T404S 0.36 tolerated(0.36) benign(0.001) TCGA-S3-AA0Z-01 12 55615147 55615147 C T OR10A7 Silent p.F113F 0.28 TCGA-S3-AA0Z-01 13 43935553 43935553 T A ENOX1 Missense_Mutation p.N82Y 0.80 deleterious(0) benign(0.087) TCGA-S3-AA0Z-01 13 49033944 49033944 T C RB1 Missense_Mutation p.L694P 0.83 deleterious(0) probably_damaging(1) TCGA-S3-AA0Z-01 14 31085657 31085657 G C G2E3 Missense_Mutation p.E680Q 0.06 tolerated(0.52) benign(0.029) TCGA-S3-AA0Z-01 14 45414247 45414248 AA - KLHL28 Frame_Shift_Del p.F295Cfs*5 0.35 TCGA-S3-AA0Z-01 14 65240015 65240015 C A SPTB Missense_Mutation p.D1701Y 0.79 deleterious(0.02) probably_damaging(0.98) TCGA-S3-AA0Z-01 14 99976750 99976751 CG - CCNK Nonsense_Mutation p.Y458* 0.40 TCGA-S3-AA0Z-01 15 41689197 41689197 T C NDUFAF1 Missense_Mutation p.T21A 0.30 tolerated(0.76) benign(0) TCGA-S3-AA0Z-01 15 52356958 52356958 G T MAPK6 Nonsense_Mutation p.E643* 0.10 TCGA-S3-AA0Z-01 15 72638681 72638681 G A HEXA Intron 0.38 TCGA-S3-AA0Z-01 16 22291527 22291527 A G EEF2K Missense_Mutation p.D633G 0.21 deleterious(0.02) benign(0.063) TCGA-S3-AA0Z-01 17 7578550 7578550 G T TP53 Missense_Mutation p.S127Y 0.93 deleterious(0) probably_damaging(1) TCGA-S3-AA0Z-01 19 11849719 11849719 G T ZNF823 5'UTR 0.22 TCGA-S3-AA0Z-01 19 12882131 12882131 C T HOOK2 Silent p.L201L 0.29 TCGA-S3-AA0Z-01 19 18321746 18321746 C T PDE4C Missense_Mutation p.R711K 0.30 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-S3-AA0Z-01 19 2514851 2514851 G A GNG7 3'UTR 0.44 TCGA-S3-AA0Z-01 19 47845089 47845089 G T C5AR2 3'UTR 0.31 TCGA-S3-AA0Z-01 1 110032739 110032739 C T ATXN7L2 Missense_Mutation p.R409W 0.08 deleterious(0) probably_damaging(1) TCGA-S3-AA0Z-01 1 112319711 112319711 C T KCND3 Missense_Mutation p.R568H 0.28 tolerated_low_confidence(0.16) possibly_damaging(0.522) TCGA-S3-AA0Z-01 1 177902669 177902669 G A SEC16B Nonsense_Mutation p.R892* 0.14 TCGA-S3-AA0Z-01 1 205225507 205225507 G T TMCC2 Intron 0.18 TCGA-S3-AA0Z-01 1 209806431 209806431 T C LAMB3 Silent p.Q204Q 0.15 TCGA-S3-AA0Z-01 1 21605783 21605783 C T ECE1 Missense_Mutation p.A61T 0.07 tolerated(0.33) benign(0.001) TCGA-S3-AA0Z-01 1 225548490 225548490 G A DNAH14 Missense_Mutation p.D3869N 0.37 possibly_damaging(0.787) TCGA-S3-AA0Z-01 1 248525102 248525102 A C OR2T4 Missense_Mutation p.N74H 0.10 deleterious(0) probably_damaging(0.992) TCGA-S3-AA0Z-01 1 36898036 36898036 C T OSCP1 Missense_Mutation p.R141Q 0.51 tolerated(0.25) benign(0.003) TCGA-S3-AA0Z-01 1 46034235 46034235 A T AKR1A1 Missense_Mutation p.S211C 0.38 deleterious(0.05) possibly_damaging(0.878) TCGA-S3-AA0Z-01 1 87120192 87120192 C T RP4-651E10.4 Intron 0.35 TCGA-S3-AA0Z-01 22 38169818 38169818 T C TRIOBP 3'UTR 0.51 TCGA-S3-AA0Z-01 22 42526874 42526874 C A CYP2D6 5'UTR 0.18 TCGA-S3-AA0Z-01 2 179391520 179391520 C T TTN 3'UTR 0.39 TCGA-S3-AA0Z-01 2 96081259 96081259 G A FAHD2A 3'UTR 0.55 TCGA-S3-AA0Z-01 3 43621920 43621920 G T ANO10 Missense_Mutation p.L173M 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-S3-AA0Z-01 3 45989797 45989797 G A CXCR6 3'Flank 0.35 TCGA-S3-AA0Z-01 3 81627114 81627114 G A GBE1 Missense_Mutation p.T527M 0.72 deleterious(0) probably_damaging(0.982) TCGA-S3-AA0Z-01 3 98538201 98538201 G A DCBLD2 Missense_Mutation p.S311L 0.32 deleterious(0) probably_damaging(0.991) TCGA-S3-AA0Z-01 4 166024155 166024155 G A TMEM192 Nonsense_Mutation p.R41* 0.38 TCGA-S3-AA0Z-01 4 7968746 7968746 C G ABLIM2 Missense_Mutation p.D637H 0.50 deleterious(0) probably_damaging(0.918) TCGA-S3-AA0Z-01 5 140615833 140615833 G A PCDHB18 RNA 0.47 TCGA-S3-AA0Z-01 5 176385134 176385134 C G UIMC1 Missense_Mutation p.E408Q 0.38 deleterious(0.01) possibly_damaging(0.886) TCGA-S3-AA0Z-01 6 107474871 107474871 A C PDSS2 3'UTR 0.22 TCGA-S3-AA0Z-01 6 131919731 131919731 G C MED23 Silent p.L797L 0.69 TCGA-S3-AA0Z-01 6 139186313 139186313 T G ECT2L Missense_Mutation p.I491R 0.29 deleterious(0) possibly_damaging(0.472) TCGA-S3-AA0Z-01 6 24651139 24651139 T C TDP2 Silent p.A322A 0.47 TCGA-S3-AA0Z-01 6 30568377 30568377 G A PPP1R10 3'UTR 0.16 TCGA-S3-AA0Z-01 6 76744475 76744475 G A IMPG1 Missense_Mutation p.R111W 0.55 deleterious(0) probably_damaging(0.999) TCGA-S3-AA0Z-01 7 12417476 12417476 G A VWDE Missense_Mutation p.P317L 0.57 deleterious(0) probably_damaging(1) TCGA-S3-AA0Z-01 7 139026030 139026030 C T C7orf55 5'UTR 0.47 TCGA-S3-AA0Z-01 7 6202691 6202691 A G CYTH3 3'UTR 0.24 TCGA-S3-AA0Z-01 8 124384016 124384016 G T ATAD2 Missense_Mutation p.H144N 0.43 tolerated_low_confidence(0.12) benign(0.001) TCGA-S3-AA0Z-01 8 131812734 131812734 T G ADCY8 Missense_Mutation p.M1000L 0.26 tolerated(1) possibly_damaging(0.801) TCGA-S3-AA0Z-01 8 146035874 146035874 A C ZNF517 3'Flank 0.53 TCGA-S3-AA0Z-01 8 25190145 25190145 C A DOCK5 Silent p.L676L 0.38 TCGA-S3-AA0Z-01 8 33454886 33454886 G A DUSP26 Missense_Mutation p.R50W 0.34 deleterious(0) probably_damaging(0.956) TCGA-S3-AA0Z-01 8 55060147 55060147 C T MRPL15 Silent p.F253F 0.40 TCGA-S3-AA0Z-01 9 126144043 126144043 G A DENND1A Missense_Mutation p.P900S 0.30 tolerated_low_confidence(0.31) probably_damaging(0.999) TCGA-S3-AA0Z-01 9 13279442 13279442 A G MPDZ 5'UTR 0.36 TCGA-S3-AA0Z-01 9 2039872 2039872 G A SMARCA2 Silent p.P254P 0.46 TCGA-S3-AA0Z-01 9 72131446 72131446 G A APBA1 Silent p.R227R 0.47 TCGA-S3-AA0Z-01 9 97572300 97572300 C T C9orf3 Intron 0.25 TCGA-S3-AA0Z-01 X 110497624 110497624 C G CAPN6 Missense_Mutation p.C58S 0.44 tolerated(0.09) benign(0) TCGA-S3-AA0Z-01 X 11162096 11162096 T A ARHGAP6 Intron 0.43 TCGA-S3-AA0Z-01 X 130678385 130678385 T C OR13H1 Missense_Mutation p.L113P 0.52 deleterious(0) probably_damaging(0.928) TCGA-S3-AA0Z-01 X 14868746 14868746 G C FANCB Missense_Mutation p.I459M 0.31 deleterious(0.03) possibly_damaging(0.627) TCGA-S3-AA0Z-01 X 152853898 152853898 G A FAM58A Silent p.D222D 0.52 TCGA-S3-AA0Z-01 X 2761105 2761105 C T GYG2 Missense_Mutation p.S25L 0.27 tolerated_low_confidence(0.33) benign(0) TCGA-S3-AA0Z-01 X 30872658 30872658 C A TAB3 Missense_Mutation p.R375I 0.28 deleterious(0) probably_damaging(0.947) TCGA-S3-AA0Z-01 X 38178138 38178138 G A RPGR Missense_Mutation p.S138F 0.38 probably_damaging(0.94) TCGA-S3-AA0Z-01 X 54359929 54359929 G A WNK3 Nonsense_Mutation p.R60* 0.52 TCGA-S3-AA0Z-01 X 76762725 76762725 G A ATRX 3'UTR 0.32 TCGA-S3-AA0Z-01 X 9900319 9900319 G A SHROOM2 Missense_Mutation p.R999Q 0.44 tolerated(0.77) benign(0) TCGA-S3-AA10-01 10 118236167 118236167 A T PNLIPRP3 Silent p.G392G 0.17 TCGA-S3-AA10-01 10 17026228 17026228 G A CUBN Silent p.T1467T 0.04 TCGA-S3-AA10-01 10 18429897 18429897 C G CACNB2 Intron 0.31 TCGA-S3-AA10-01 10 33619725 33619725 T C NRP1 Silent p.K53K 0.44 TCGA-S3-AA10-01 10 75528587 75528587 G A SEC24C Missense_Mutation p.R734Q 0.28 tolerated(0.36) possibly_damaging(0.671) TCGA-S3-AA10-01 10 85962741 85962741 C T CDHR1 Silent p.G215G 0.30 TCGA-S3-AA10-01 11 117691330 117691330 C T FXYD2 Intron 0.62 TCGA-S3-AA10-01 11 32410530 32410530 G C WT1 3'UTR 0.64 TCGA-S3-AA10-01 11 5275603 5275603 G C HBG2 Missense_Mutation p.H78Q 0.18 deleterious(0.01) benign(0.128) TCGA-S3-AA10-01 11 534289 534289 C A HRAS Missense_Mutation p.G12C 0.53 deleterious(0.04) possibly_damaging(0.629) TCGA-S3-AA10-01 11 55432985 55432985 G A OR4C6 Missense_Mutation p.V115M 0.46 deleterious_low_confidence(0.02) benign(0.303) TCGA-S3-AA10-01 11 5663657 5663657 A C TRIM34 Missense_Mutation p.K265N 0.52 deleterious(0.04) possibly_damaging(0.821) TCGA-S3-AA10-01 11 61735718 61735718 G T AP003733.1 Missense_Mutation p.R48L 0.49 unknown(0) TCGA-S3-AA10-01 11 7674284 7674284 A G PPFIBP2 Silent p.G822G 0.50 TCGA-S3-AA10-01 11 83172946 83172946 G C DLG2 Intron 0.29 TCGA-S3-AA10-01 12 101740258 101740282 ACTTGCAAAACAACTAATGGAAGGC - UTP20 Frame_Shift_Del p.L1593Kfs*18 0.14 TCGA-S3-AA10-01 12 1702373 1702373 G A FBXL14 Missense_Mutation p.S287L 0.14 deleterious(0) probably_damaging(1) TCGA-S3-AA10-01 12 21207538 21207546 TGGACTTAC GCTCATATTCCGTG SLCO1B7 Frame_Shift_Ins p.G504Lfs*11 0.19 TCGA-S3-AA10-01 12 21997707 21997707 G T ABCC9 Missense_Mutation p.P1080Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-S3-AA10-01 12 25308346 25308346 C T CASC1 Missense_Mutation p.D67N 0.24 deleterious(0.03) possibly_damaging(0.833) TCGA-S3-AA10-01 12 57422537 57422537 C A MYO1A 3'UTR 0.31 TCGA-S3-AA10-01 12 80328955 80328955 C G PPP1R12A 5'UTR 0.25 TCGA-S3-AA10-01 12 81472027 81472027 G C ACSS3 Missense_Mutation p.R43P 0.27 deleterious_low_confidence(0.02) benign(0.204) TCGA-S3-AA10-01 13 46725202 46725202 G C LCP1 Missense_Mutation p.L251V 0.32 deleterious(0.03) possibly_damaging(0.801) TCGA-S3-AA10-01 13 48939031 48939031 T A RB1 Missense_Mutation p.V288E 0.45 deleterious(0) probably_damaging(0.998) TCGA-S3-AA10-01 13 52364197 52364197 C G DHRS12 Missense_Mutation p.R133T 0.34 deleterious(0.01) possibly_damaging(0.584) TCGA-S3-AA10-01 13 73282750 73282750 C T MZT1 3'UTR 0.09 TCGA-S3-AA10-01 14 19573124 19573124 A T POTEG Missense_Mutation p.N408Y 0.07 deleterious(0) probably_damaging(0.929) TCGA-S3-AA10-01 14 21816350 21816350 A G RPGRIP1 Missense_Mutation p.S1213G 0.10 deleterious(0.01) possibly_damaging(0.766) TCGA-S3-AA10-01 14 23512579 23512579 C G PSMB11 3'UTR 0.55 TCGA-S3-AA10-01 14 64921520 64921520 C T MTHFD1 Missense_Mutation p.T882I 0.38 deleterious(0.01) possibly_damaging(0.471) TCGA-S3-AA10-01 15 85414324 85414327 AATT - ALPK3 3'UTR 0.46 TCGA-S3-AA10-01 16 31409173 31409173 T G ITGAD Missense_Mutation p.C124G 0.11 deleterious(0) probably_damaging(1) TCGA-S3-AA10-01 17 18057490 18057507 CTCCTGTTCCGGCAGGTG AC MYO15A Splice_Site p.X2712_splice 0.41 TCGA-S3-AA10-01 17 27308873 27308873 C A SEZ6 Silent p.G80G 0.50 TCGA-S3-AA10-01 17 27889880 27889880 G C ABHD15 Missense_Mutation p.T369S 0.38 tolerated(0.36) benign(0.062) TCGA-S3-AA10-01 17 35930808 35930808 G A SYNRG Silent p.N425N 0.31 TCGA-S3-AA10-01 17 4173598 4173598 C G UBE2G1 3'UTR 0.17 TCGA-S3-AA10-01 17 57784808 57784808 C G VMP1 5'Flank 0.26 TCGA-S3-AA10-01 17 695338 695338 C T RNMTL1 3'UTR 0.23 TCGA-S3-AA10-01 17 7221133 7221133 G T NEURL4 Silent p.P1393P 0.31 TCGA-S3-AA10-01 17 7579335 7579336 - C TP53 Frame_Shift_Ins p.T118Dfs*31 0.33 TCGA-S3-AA10-01 17 78441281 78441281 G A NPTX1 3'UTR 0.29 TCGA-S3-AA10-01 18 18530787 18530787 A G ROCK1 3'UTR 0.35 TCGA-S3-AA10-01 19 13325100 13325100 C A CACNA1A Nonsense_Mutation p.E1963* 0.26 TCGA-S3-AA10-01 19 20296836 20296836 G C ZNF486 Missense_Mutation p.E66D 0.29 deleterious(0.01) benign(0.074) TCGA-S3-AA10-01 19 23557565 23557565 C T ZNF91 Missense_Mutation p.G11E 0.33 tolerated(0.26) benign(0.28) TCGA-S3-AA10-01 19 34663648 34663662 CCACCGTAGCCCTTG - LSM14A In_Frame_Del p.T35_A39del 0.12 TCGA-S3-AA10-01 19 35550697 35550697 G T HPN Missense_Mutation p.G94V 0.25 deleterious(0) probably_damaging(0.999) TCGA-S3-AA10-01 19 38795113 38795113 G A C19orf33 Missense_Mutation p.A41T 0.30 tolerated_low_confidence(0.14) benign(0.116) TCGA-S3-AA10-01 19 39191307 39191307 A G ACTN4 Missense_Mutation p.D77G 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-S3-AA10-01 19 4323752 4323752 G A FSD1 3'UTR 0.24 TCGA-S3-AA10-01 19 45015191 45015191 C T CEACAM20 RNA 0.24 TCGA-S3-AA10-01 19 46176106 46176106 C G GIPR Intron 0.12 TCGA-S3-AA10-01 19 50209536 50209556 GGCCCTGGAGGCGGTGGAAGG - CPT1C In_Frame_Del p.L405_A411del 0.32 TCGA-S3-AA10-01 19 51890495 51890495 C A LIM2 Missense_Mutation p.R68L 0.28 tolerated_low_confidence(0.66) benign(0) TCGA-S3-AA10-01 19 52918529 52918529 A T ZNF528 Missense_Mutation p.N142Y 0.20 tolerated(0.6) possibly_damaging(0.54) TCGA-S3-AA10-01 19 53269651 53269651 C A ZNF600 Missense_Mutation p.C453F 0.26 tolerated(0.71) benign(0.044) TCGA-S3-AA10-01 19 55873769 55873769 G A FAM71E2 Silent p.D136D 0.18 TCGA-S3-AA10-01 19 8028030 8028030 T C ELAVL1 3'UTR 0.31 TCGA-S3-AA10-01 19 8194141 8194141 G A FBN3 Missense_Mutation p.S718L 0.31 tolerated(0.09) benign(0.026) TCGA-S3-AA10-01 1 112309054 112309054 A T DDX20 Missense_Mutation p.N670Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-S3-AA10-01 1 147086273 147086273 C T BCL9 Missense_Mutation p.P140S 0.18 tolerated(0.28) benign(0.001) TCGA-S3-AA10-01 1 152325149 152325149 G A FLG2 Missense_Mutation p.H1705Y 0.07 benign(0.152) TCGA-S3-AA10-01 1 152637115 152637115 G A LCE2D 3'UTR 0.22 TCGA-S3-AA10-01 1 155851237 155851237 A G SYT11 Missense_Mutation p.R412G 0.30 deleterious(0.01) benign(0.201) TCGA-S3-AA10-01 1 161496272 161496272 C T HSPA6 Silent p.I608I 0.38 TCGA-S3-AA10-01 1 203037619 203037619 G C PPFIA4 Missense_Mutation p.V557L 0.39 tolerated(0.15) benign(0.026) TCGA-S3-AA10-01 1 225700625 225700625 G A ENAH Missense_Mutation p.P438S 0.16 tolerated(0.27) possibly_damaging(0.573) TCGA-S3-AA10-01 1 236902808 236902811 GCCC CT ACTN2 Frame_Shift_Del p.M361Ifs*21 0.25 TCGA-S3-AA10-01 1 242024745 242024745 G C EXO1 Missense_Mutation p.G328R 0.19 deleterious(0) probably_damaging(1) TCGA-S3-AA10-01 1 2442825 2442825 T C PANK4 Silent p.E595E 0.06 TCGA-S3-AA10-01 1 32193214 32193238 GGGAGCGGGAGGGGCCGTGGAGATG - BAI2 Intron 0.13 TCGA-S3-AA10-01 1 37946021 37946021 C G ZC3H12A Missense_Mutation p.P192A 0.20 tolerated(0.25) probably_damaging(1) TCGA-S3-AA10-01 1 40105226 40105226 G T HEYL Silent p.G24G 0.38 TCGA-S3-AA10-01 1 40435308 40435308 T G MFSD2A 3'UTR 0.16 TCGA-S3-AA10-01 1 41978548 41978548 G - HIVEP3 Frame_Shift_Del p.P2115Rfs*73 0.16 TCGA-S3-AA10-01 1 46531848 46531848 G C PIK3R3 Missense_Mutation p.Q167E 0.38 tolerated(0.4) benign(0.016) TCGA-S3-AA10-01 1 47023180 47023180 T A MKNK1 3'UTR 0.16 TCGA-S3-AA10-01 1 53569191 53569191 T A SLC1A7 Missense_Mutation p.E175V 0.12 tolerated(0.16) benign(0.005) TCGA-S3-AA10-01 1 57378141 57378151 CCTGCGCCGCG - C8A Frame_Shift_Del p.R484Gfs*36 0.21 TCGA-S3-AA10-01 1 6511686 6511686 T A ESPN Missense_Mutation p.S647T 0.43 tolerated(0.06) possibly_damaging(0.733) TCGA-S3-AA10-01 1 85736391 85736391 T G BCL10 Missense_Mutation p.I86L 0.18 deleterious(0.04) benign(0.402) TCGA-S3-AA10-01 1 89449093 89449093 G C RBMXL1 Missense_Mutation p.N139K 0.15 tolerated(0.43) benign(0.031) TCGA-S3-AA10-01 1 89477565 89477565 G C GBP3 Silent p.G338G 0.32 TCGA-S3-AA10-01 20 1616168 1616168 A C SIRPG Missense_Mutation p.F276V 0.28 deleterious(0) probably_damaging(1) TCGA-S3-AA10-01 20 170226 170226 C T DEFB128 Silent p.E13E 0.09 TCGA-S3-AA10-01 20 4705982 4705982 T C PRND 3'UTR 0.18 TCGA-S3-AA10-01 20 52183805 52183805 T C ZNF217 3'UTR 0.29 TCGA-S3-AA10-01 20 61292435 61292435 C G SLCO4A1 Silent p.V343V 0.29 TCGA-S3-AA10-01 21 41300946 41300946 C G PCP4 Missense_Mutation p.D33E 0.26 deleterious(0) possibly_damaging(0.899) TCGA-S3-AA10-01 22 18022282 18022282 C T CECR2 Missense_Mutation p.P796L 0.20 deleterious(0) possibly_damaging(0.628) TCGA-S3-AA10-01 22 24938939 24938939 G C GUCD1 3'UTR 0.30 TCGA-S3-AA10-01 22 50921739 50921739 C T ADM2 3'UTR 0.18 TCGA-S3-AA10-01 2 191373817 191373840 TGCCACCGTTCACTAGAACAGTTC - TMEM194B 3'UTR 0.20 TCGA-S3-AA10-01 2 19552105 19552105 C A OSR1 Missense_Mutation p.R244S 0.33 tolerated(0.18) possibly_damaging(0.677) TCGA-S3-AA10-01 2 204295834 204295834 T C ABI2 3'UTR 0.69 TCGA-S3-AA10-01 2 20648153 20648153 C G RHOB 3'UTR 0.41 TCGA-S3-AA10-01 2 209218702 209218702 A G PIKFYVE Silent p.L1975L 0.18 TCGA-S3-AA10-01 2 220415032 220415032 C G TMEM198 3'UTR 0.09 TCGA-S3-AA10-01 2 232225499 232225499 C G MIR4777 5'Flank 0.58 TCGA-S3-AA10-01 2 33747093 33747093 T A RASGRP3 Missense_Mutation p.L147Q 0.66 deleterious(0) probably_damaging(0.999) TCGA-S3-AA10-01 2 48808826 48808826 G A STON1-GTF2A1L Missense_Mutation p.V352M 0.34 deleterious(0.01) benign(0.17) TCGA-S3-AA10-01 2 64779891 64779891 A G AFTPH Missense_Mutation p.N428S 0.48 tolerated(0.53) benign(0.393) TCGA-S3-AA10-01 3 101039403 101039403 G T IMPG2 5'UTR 0.30 TCGA-S3-AA10-01 3 108270133 108270133 C T KIAA1524 Missense_Mutation p.E861K 0.11 tolerated(0.08) benign(0.273) TCGA-S3-AA10-01 3 121616273 121616273 A G SLC15A2 Missense_Mutation p.N78D 0.27 tolerated(1) benign(0) TCGA-S3-AA10-01 3 128990698 128990698 G A COPG1 Silent p.T644T 0.13 TCGA-S3-AA10-01 3 131100905 131100905 G C NUDT16 Missense_Mutation p.D52H 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-S3-AA10-01 3 134898744 134898744 A G EPHB1 Missense_Mutation p.E601G 0.22 deleterious(0) probably_damaging(1) TCGA-S3-AA10-01 3 147132949 147132949 T C ZIC1 3'UTR 0.22 TCGA-S3-AA10-01 3 44310751 44310751 T C TOPAZ1 Silent p.N1068N 0.32 TCGA-S3-AA10-01 3 47727598 47727598 C G SMARCC1 Silent p.V442V 0.32 TCGA-S3-AA10-01 3 52649458 52649458 T A PBRM1 Silent p.A611A 0.37 TCGA-S3-AA10-01 4 108910950 108910950 T G HADH 5'UTR 0.31 TCGA-S3-AA10-01 4 114274633 114274633 G C ANK2 Missense_Mutation p.R1620T 0.21 possibly_damaging(0.848) TCGA-S3-AA10-01 4 71522222 71522222 C A IGJ Missense_Mutation p.D102Y 0.08 deleterious(0.03) possibly_damaging(0.617) TCGA-S3-AA10-01 4 72316223 72316223 A G SLC4A4 Missense_Mutation p.I391V 0.22 deleterious(0.01) possibly_damaging(0.521) TCGA-S3-AA10-01 5 140787955 140787955 G A PCDHGB6 Silent p.S62S 0.19 TCGA-S3-AA10-01 5 148695737 148695737 G T AFAP1L1 Missense_Mutation p.A380S 0.38 tolerated(0.85) benign(0.018) TCGA-S3-AA10-01 5 159679734 159679734 T G CCNJL 3'UTR 0.39 TCGA-S3-AA10-01 6 132014716 132014716 G A ENPP3 Missense_Mutation p.R455K 0.49 deleterious(0) benign(0.327) TCGA-S3-AA10-01 6 27841248 27841248 C A HIST1H4L Missense_Mutation p.G14V 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-S3-AA10-01 6 30037148 30037148 C G PPP1R11 3'UTR 0.17 TCGA-S3-AA10-01 6 31541611 31541611 C T LTA 3'UTR 0.17 TCGA-S3-AA10-01 6 32036421 32036421 C T TNXB Missense_Mutation p.R1989H 0.27 benign(0.009) TCGA-S3-AA10-01 6 35391814 35391814 G C PPARD Silent p.V172V 0.21 TCGA-S3-AA10-01 6 38783390 38783390 C G DNAH8 Missense_Mutation p.D943E 0.30 benign(0.001) TCGA-S3-AA10-01 6 46189898 46189898 T A RCAN2 3'UTR 0.28 TCGA-S3-AA10-01 6 73919533 73919533 G A RP11-257K9.8 3'UTR 0.30 TCGA-S3-AA10-01 6 74516745 74516750 ACACTT - CD109 In_Frame_Del p.L1048_T1049del 0.31 TCGA-S3-AA10-01 6 87994130 87994130 G A GJB7 Silent p.D167D 0.39 TCGA-S3-AA10-01 7 100198228 100198228 G T FBXO24 Missense_Mutation p.E521D 0.40 tolerated_low_confidence(0.11) benign(0.217) TCGA-S3-AA10-01 7 130140636 130140636 C T MEST Silent p.T218T 0.20 TCGA-S3-AA10-01 7 138258378 138258378 G CCT TRIM24 Frame_Shift_Ins p.G669Pfs*9 0.33 TCGA-S3-AA10-01 7 144097358 144097358 C T NOBOX Missense_Mutation p.D298N 0.24 deleterious(0.01) probably_damaging(1) TCGA-S3-AA10-01 7 154519519 154519519 G T DPP6 Missense_Mutation p.G269W 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-S3-AA10-01 7 24905078 24905078 T A OSBPL3 Missense_Mutation p.S186C 0.21 deleterious(0.05) possibly_damaging(0.642) TCGA-S3-AA10-01 7 26236970 26236988 TCCCATCAATTGAATGAGG - HNRNPA2B1 Frame_Shift_Del p.P83Efs*2 0.23 TCGA-S3-AA10-01 7 44578652 44578652 C T NPC1L1 Silent p.Q448Q 0.20 TCGA-S3-AA10-01 7 87072754 87072754 T A ABCB4 Nonsense_Mutation p.K413* 0.13 TCGA-S3-AA10-01 7 92763738 92763738 A G SAMD9L Missense_Mutation p.L516S 0.44 tolerated(0.63) benign(0.028) TCGA-S3-AA10-01 8 142486201 142486201 A G MROH5 Intron 0.27 TCGA-S3-AA10-01 8 26906450 26906450 A C MIR548H4 RNA 0.22 TCGA-S3-AA10-01 8 3000058 3000058 G A CSMD1 Missense_Mutation p.T2057M 0.24 probably_damaging(0.998) TCGA-S3-AA10-01 8 38184298 38184298 T C WHSC1L1 Missense_Mutation p.E553G 0.13 tolerated(0.12) benign(0.008) TCGA-S3-AA10-01 8 92409735 92409735 T G SLC26A7 3'Flank 0.06 TCGA-S3-AA10-01 8 95392443 95392443 C G RAD54B Missense_Mutation p.G726A 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-S3-AA10-01 9 123618548 123618548 G C PHF19 3'UTR 0.13 TCGA-S3-AA10-01 9 131784702 131784702 A G SH3GLB2 Missense_Mutation p.F22L 0.24 tolerated(0.34) possibly_damaging(0.9) TCGA-S3-AA10-01 9 27330373 27330373 T A MOB3B 3'UTR 0.24 TCGA-S3-AA10-01 9 3247779 3247779 G C RFX3 Intron 0.19 TCGA-S3-AA10-01 9 37740914 37740914 C T FRMPD1 Intron 0.11 TCGA-S3-AA10-01 9 5921279 5921279 C G KIAA2026 Missense_Mutation p.V1573L 0.14 deleterious(0) probably_damaging(0.971) TCGA-S3-AA10-01 9 71998556 71998556 C G FAM189A2 Missense_Mutation p.P169A 0.11 tolerated(0.79) benign(0.003) TCGA-S3-AA10-01 9 74299219 74299219 A G TMEM2 3'UTR 0.50 TCGA-S3-AA10-01 9 74970966 74970966 T A ZFAND5 Missense_Mutation p.D182V 0.29 deleterious(0) probably_damaging(0.998) TCGA-S3-AA10-01 9 80049352 80049352 C A GNA14 Missense_Mutation p.W132C 0.30 deleterious(0) probably_damaging(0.999) TCGA-S3-AA10-01 9 86593158 86593158 C T HNRNPK Missense_Mutation p.E4K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-S3-AA10-01 X 147743690 147743690 C G AFF2 Missense_Mutation p.L148V 0.19 tolerated(0.31) probably_damaging(0.987) TCGA-S3-AA10-01 X 149613789 149613789 G A MAMLD1 Missense_Mutation p.D3N 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-S3-AA10-01 X 50376655 50376655 A G SHROOM4 Silent p.P806P 0.33 TCGA-S3-AA10-01 X 54112322 54112322 T C FAM120C Missense_Mutation p.M889V 0.39 deleterious(0) benign(0.269) TCGA-S3-AA10-01 X 77528539 77528539 G A CYSLTR1 Silent p.I235I 0.43 TCGA-S3-AA10-01 X 78426872 78426872 C T GPR174 Missense_Mutation p.P123L 0.44 deleterious(0) probably_damaging(1) TCGA-S3-AA11-01 10 114710389 114710389 T C TCF7L2 5'UTR 0.19 TCGA-S3-AA11-01 10 73768180 73768180 A G CHST3 Missense_Mutation p.N464S 0.29 deleterious(0) possibly_damaging(0.831) TCGA-S3-AA11-01 10 89690821 89690821 T G PTEN Nonsense_Mutation p.Y76* 0.55 TCGA-S3-AA11-01 10 97071899 97071899 C T SORBS1 3'UTR 0.50 TCGA-S3-AA11-01 11 10825051 10825051 A T EIF4G2 Silent p.P263P 0.18 TCGA-S3-AA11-01 11 110126076 110126076 T A RDX Missense_Mutation p.I245F 0.27 deleterious(0.02) probably_damaging(0.963) TCGA-S3-AA11-01 11 111853117 111853117 A G DIXDC1 Missense_Mutation p.Y274C 0.32 tolerated(0.19) benign(0) TCGA-S3-AA11-01 11 18629281 18629281 G A SPTY2D1 3'UTR 0.38 TCGA-S3-AA11-01 11 60416755 60416755 G A LINC00301 RNA 0.38 TCGA-S3-AA11-01 11 63527085 63527085 G T RTN3 3'UTR 0.42 TCGA-S3-AA11-01 12 115120672 115120672 G C TBX3 Missense_Mutation p.L112V 0.31 deleterious(0) probably_damaging(0.998) TCGA-S3-AA11-01 12 40728872 40728872 C T LRRK2 Missense_Mutation p.S1954F 0.39 deleterious(0) probably_damaging(1) TCGA-S3-AA11-01 12 95693742 95693742 A G VEZT Intron 0.32 TCGA-S3-AA11-01 13 101167776 101167776 G A PCCA Silent p.P665P 0.09 TCGA-S3-AA11-01 13 25378475 25378475 C T RNF17 Missense_Mutation p.H667Y 0.40 tolerated(0.08) benign(0) TCGA-S3-AA11-01 13 32870007 32870007 T C FRY 3'UTR 0.42 TCGA-S3-AA11-01 13 53035860 53035860 A G CKAP2 Missense_Mutation p.K301R 0.27 deleterious(0.03) benign(0.058) TCGA-S3-AA11-01 13 80126829 80126829 A T NDFIP2 3'UTR 0.18 TCGA-S3-AA11-01 14 102964547 102964547 G A TECPR2 Missense_Mutation p.A1397T 0.33 tolerated(0.44) benign(0.002) TCGA-S3-AA11-01 14 38061261 38061261 T G FOXA1 Missense_Mutation p.Y243S 0.21 deleterious(0) probably_damaging(0.999) TCGA-S3-AA11-01 14 38061312 38061312 T A FOXA1 Missense_Mutation p.D226V 0.37 deleterious(0) probably_damaging(0.998) TCGA-S3-AA11-01 14 38208331 38208331 G A TTC6 Silent p.E778E 0.23 TCGA-S3-AA11-01 14 77725830 77725830 C T TMEM63C 3'UTR 0.23 TCGA-S3-AA11-01 14 90872511 90872511 G T CALM1 3'UTR 0.30 TCGA-S3-AA11-01 15 48700865 48700865 C A FBN1 3'UTR 0.32 TCGA-S3-AA11-01 15 50785047 50785047 T G USP8 Missense_Mutation p.L795R 0.35 deleterious(0) probably_damaging(1) TCGA-S3-AA11-01 15 54306424 54306426 AAG - UNC13C In_Frame_Del p.K443del 0.43 TCGA-S3-AA11-01 15 68583448 68583448 A C FEM1B Silent p.V584V 0.20 TCGA-S3-AA11-01 15 81585169 81585169 G T IL16 Nonsense_Mutation p.E565* 0.28 TCGA-S3-AA11-01 15 84442378 84442378 C G ADAMTSL3 Missense_Mutation p.S98C 0.28 deleterious(0) probably_damaging(0.999) TCGA-S3-AA11-01 15 85325945 85325945 G T ZNF592 Silent p.L13L 0.33 TCGA-S3-AA11-01 15 93570352 93570353 TA - CHD2 3'UTR 0.18 TCGA-S3-AA11-01 16 1831390 1831390 G T SPSB3 Missense_Mutation p.S32Y 0.38 deleterious_low_confidence(0.02) benign(0.248) TCGA-S3-AA11-01 17 21320311 21320311 C T KCNJ12 3'UTR 0.09 TCGA-S3-AA11-01 17 21320689 21320689 G A KCNJ12 3'UTR 0.19 TCGA-S3-AA11-01 17 47696405 47696405 C T SPOP Missense_Mutation p.D140N 0.09 deleterious(0.02) probably_damaging(1) TCGA-S3-AA11-01 18 22806433 22806433 G A ZNF521 Silent p.S483S 0.38 TCGA-S3-AA11-01 18 8638581 8638581 T A RAB12 3'UTR 0.28 TCGA-S3-AA11-01 18 8638582 8638582 A T RAB12 3'UTR 0.27 TCGA-S3-AA11-01 18 8638589 8638589 T A RAB12 3'UTR 0.28 TCGA-S3-AA11-01 18 9956791 9956791 A G VAPA 3'Flank 0.50 TCGA-S3-AA11-01 19 2233277 2233277 C A PLEKHJ1 3'UTR 0.29 TCGA-S3-AA11-01 19 39322498 39322498 G A ECH1 5'UTR 0.37 TCGA-S3-AA11-01 19 46002484 46002484 T C PPM1N Missense_Mutation p.S252P 0.31 deleterious(0) probably_damaging(0.958) TCGA-S3-AA11-01 19 48973700 48973700 G A CTC-273B12.7 Missense_Mutation p.R21Q 0.27 deleterious(0) benign(0.042) TCGA-S3-AA11-01 19 57866689 57866689 C A ZNF304 Intron 0.28 TCGA-S3-AA11-01 19 59092865 59092865 C T CENPBD1P1 Intron 0.08 TCGA-S3-AA11-01 1 109472881 109472881 T - GPSM2 3'UTR 0.24 TCGA-S3-AA11-01 1 150937694 150937694 C T CERS2 3'UTR 0.04 TCGA-S3-AA11-01 1 155450616 155450616 A T ASH1L Nonsense_Mutation p.L682* 0.25 TCGA-S3-AA11-01 1 165664596 165664597 CC - ALDH9A1 Frame_Shift_Del p.E74Sfs*13 0.20 TCGA-S3-AA11-01 1 182353845 182353845 C T GLUL Missense_Mutation p.A273T 0.52 deleterious(0) possibly_damaging(0.72) TCGA-S3-AA11-01 1 183113186 183113186 C T LAMC1 3'UTR 0.14 TCGA-S3-AA11-01 1 22446953 22446953 C T WNT4 Missense_Mutation p.E216K 0.22 deleterious(0.04) possibly_damaging(0.904) TCGA-S3-AA11-01 1 228492134 228492134 T C OBSCN Silent p.D4711D 0.46 TCGA-S3-AA11-01 1 230798889 230798889 C T COG2 Silent p.S101S 0.22 TCGA-S3-AA11-01 1 62146772 62146772 G T TM2D1 3'UTR 0.36 TCGA-S3-AA11-01 1 62146773 62146773 C G TM2D1 3'UTR 0.36 TCGA-S3-AA11-01 1 91406125 91406125 T C ZNF644 Silent p.Q262Q 0.31 TCGA-S3-AA11-01 1 92789712 92789712 T G RPAP2 Missense_Mutation p.I412R 0.28 deleterious(0.04) possibly_damaging(0.472) TCGA-S3-AA11-01 1 95530447 95530447 C A ALG14 Missense_Mutation p.R88L 0.28 tolerated(0.1) benign(0.042) TCGA-S3-AA11-01 20 1903042 1903042 C A SIRPA Missense_Mutation p.P280T 0.33 deleterious(0) probably_damaging(1) TCGA-S3-AA11-01 20 49520469 49520469 A T ADNP Missense_Mutation p.I22K 0.07 deleterious(0) possibly_damaging(0.521) TCGA-S3-AA11-01 21 40795102 40795102 G C LCA5L Missense_Mutation p.L213V 0.33 deleterious(0) probably_damaging(0.987) TCGA-S3-AA11-01 2 179417694 179417694 C A TTN Missense_Mutation p.R29978I 0.13 TCGA-S3-AA11-01 2 201791508 201791508 C A ORC2 Nonsense_Mutation p.G345* 0.05 TCGA-S3-AA11-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S3-AA11-01 2 44021781 44021781 C T DYNC2LI1 Missense_Mutation p.P169L 0.25 deleterious(0.03) possibly_damaging(0.853) TCGA-S3-AA11-01 2 9490974 9490974 G T ASAP2 Missense_Mutation p.C354F 0.26 deleterious(0) probably_damaging(1) TCGA-S3-AA11-01 3 101062666 101062666 C A SENP7 Missense_Mutation p.W657L 0.05 tolerated(0.62) probably_damaging(0.999) TCGA-S3-AA11-01 3 101370201 101370201 C A ZBTB11 Nonsense_Mutation p.E991* 0.12 TCGA-S3-AA11-01 3 126676282 126676282 G A CHCHD6 Missense_Mutation p.C197Y 0.36 deleterious(0) probably_damaging(0.979) TCGA-S3-AA11-01 3 150459201 150459201 T G SIAH2 3'UTR 0.23 TCGA-S3-AA11-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.46 deleterious(0.02) probably_damaging(0.965) TCGA-S3-AA11-01 3 184106746 184106746 G A CHRD Silent p.E925E 0.25 TCGA-S3-AA11-01 3 48309700 48309700 A G ZNF589 Silent p.R173R 0.41 TCGA-S3-AA11-01 4 103717309 103717312 TTTA - UBE2D3 3'Flank 0.15 TCGA-S3-AA11-01 5 101569856 101569856 A T SLCO4C1 3'UTR 0.24 TCGA-S3-AA11-01 5 10461354 10461354 G T ROPN1L Missense_Mutation p.G159V 0.33 deleterious(0) probably_damaging(0.998) TCGA-S3-AA11-01 5 125828903 125828903 A C GRAMD3 3'UTR 0.36 TCGA-S3-AA11-01 5 132408947 132408947 A T HSPA4 Missense_Mutation p.E152V 0.40 deleterious(0) probably_damaging(0.984) TCGA-S3-AA11-01 5 159992800 159992800 C T ATP10B Nonsense_Mutation p.W1349* 0.47 TCGA-S3-AA11-01 5 50685622 50685622 T A ISL1 Missense_Mutation p.D207E 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-S3-AA11-01 5 56184149 56184150 - A MAP3K1 Frame_Shift_Ins p.H1454Tfs*10 0.21 TCGA-S3-AA11-01 5 64863412 64863412 G T PPWD1 Missense_Mutation p.R90I 0.37 deleterious(0) probably_damaging(1) TCGA-S3-AA11-01 6 117853534 117853534 G A DCBLD1 Missense_Mutation p.A233T 0.15 deleterious(0) possibly_damaging(0.682) TCGA-S3-AA11-01 6 27799101 27799101 C A HIST1H4K Missense_Mutation p.D69Y 0.30 deleterious(0.01) possibly_damaging(0.861) TCGA-S3-AA11-01 7 104719396 104719396 A C KMT2E Missense_Mutation p.T412P 0.33 deleterious(0.01) possibly_damaging(0.803) TCGA-S3-AA11-01 7 130352327 130352328 - T COPG2 Frame_Shift_Ins p.Q29Tfs*8 0.24 TCGA-S3-AA11-01 7 31123859 31123859 G A ADCYAP1R1 Silent p.G144G 0.33 TCGA-S3-AA11-01 7 70257823 70257823 A G AUTS2 3'UTR 0.42 TCGA-S3-AA11-01 8 125597367 125597367 A C MTSS1 Missense_Mutation p.S141A 0.29 deleterious(0.02) benign(0.119) TCGA-S3-AA11-01 8 56436681 56436681 C T XKR4 Silent p.L616L 0.20 TCGA-S3-AA11-01 9 117094106 117094106 C A ORM2 Missense_Mutation p.A146D 0.30 deleterious(0) probably_damaging(0.954) TCGA-S3-AA11-01 9 131395574 131395574 C T SPTAN1 Silent p.F2465F 0.48 TCGA-S3-AA11-01 9 139088523 139088523 G T LHX3 3'UTR 0.18 TCGA-S3-AA11-01 9 139088524 139088524 C T LHX3 3'UTR 0.19 TCGA-S3-AA11-01 9 18908591 18908591 T G ADAMTSL1 3'UTR 0.15 TCGA-S3-AA11-01 9 34972340 34972340 C A KIAA1045 Intron 0.14 TCGA-S3-AA11-01 X 149905124 149905124 T C MTMR1 Silent p.L372L 0.29 TCGA-S3-AA11-01 X 36122697 36122697 C T CHDC2 Missense_Mutation p.P312S 0.24 tolerated(0.4) benign(0.232) TCGA-S3-AA11-01 X 55047649 55047649 C A ALAS2 Missense_Mutation p.Q158H 0.31 deleterious(0) benign(0.195) TCGA-S3-AA11-01 X 63407325 63407325 G T AMER1 3'UTR 0.43 TCGA-S3-AA12-01 10 105889938 105889938 T G WDR96 Silent p.R1653R 0.40 TCGA-S3-AA12-01 10 135113058 135113058 G C TUBGCP2 Missense_Mutation p.A110G 0.57 tolerated(0.31) benign(0.005) TCGA-S3-AA12-01 10 18292085 18292085 C T SLC39A12 Intron 0.28 TCGA-S3-AA12-01 10 25886806 25886806 G T GPR158 Missense_Mutation p.G751C 0.45 deleterious(0) probably_damaging(0.999) TCGA-S3-AA12-01 10 61829716 61829716 C G ANK3 Silent p.G3641G 0.62 TCGA-S3-AA12-01 10 71129312 71129312 A G HK1 Silent p.S273S 0.44 TCGA-S3-AA12-01 10 8115722 8115724 GAA - GATA3 In_Frame_Del p.K359del 0.46 TCGA-S3-AA12-01 10 89726127 89726127 A G PTEN 3'UTR 0.45 TCGA-S3-AA12-01 11 113230101 113230101 A G TTC12 Missense_Mutation p.D488G 0.13 tolerated(0.21) benign(0.003) TCGA-S3-AA12-01 11 70031739 70031739 G A ANO1 Missense_Mutation p.D878N 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-S3-AA12-01 12 106460711 106460711 G A NUAK1 Missense_Mutation p.R619W 0.05 deleterious(0.02) possibly_damaging(0.487) TCGA-S3-AA12-01 12 132611124 132611124 C T RP13-977J11.5 RNA 0.37 TCGA-S3-AA12-01 14 51214747 51214747 T C NIN Missense_Mutation p.N1676S 0.51 deleterious(0) probably_damaging(0.997) TCGA-S3-AA12-01 14 51259464 51259464 C T NIN Missense_Mutation p.R134Q 0.35 tolerated(0.41) benign(0.005) TCGA-S3-AA12-01 14 54943931 54943932 - A GMFB 3'UTR 0.33 TCGA-S3-AA12-01 14 74970173 74970173 C T LTBP2 Silent p.T1573T 0.11 TCGA-S3-AA12-01 14 75302041 75302042 - T YLPM1 Frame_Shift_Ins p.D2124* 0.40 TCGA-S3-AA12-01 15 29346296 29346296 G T APBA2 Missense_Mutation p.G70V 0.34 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-S3-AA12-01 15 59428609 59428610 - AGTA MYO1E 3'UTR 0.45 TCGA-S3-AA12-01 16 3064071 3064071 C T CLDN9 3'UTR 0.21 TCGA-S3-AA12-01 16 32265962 32265962 C A TP53TG3D Intron 0.10 TCGA-S3-AA12-01 17 13446865 13446865 C A HS3ST3A1 Intron 0.43 TCGA-S3-AA12-01 17 18602586 18602586 G A TRIM16L Intron 0.39 TCGA-S3-AA12-01 17 21319020 21319020 C T KCNJ12 Silent p.P122P 0.16 TCGA-S3-AA12-01 17 59972709 59972709 C T INTS2 Silent p.K518K 0.05 TCGA-S3-AA12-01 17 66040007 66040010 TCAG A KPNA2 In_Frame_Del p.Q329del 0.30 TCGA-S3-AA12-01 18 33744541 33744541 T C ELP2 Missense_Mutation p.F687S 0.92 deleterious(0) probably_damaging(0.999) TCGA-S3-AA12-01 19 21927858 21927858 C T ZNF100 Silent p.T36T 0.46 TCGA-S3-AA12-01 1 116234154 116234154 A T VANGL1 3'UTR 0.44 TCGA-S3-AA12-01 1 142620777 142620777 C G RP11-417J8.6 RNA 0.16 TCGA-S3-AA12-01 1 17552544 17552544 C T PADI1 Silent p.S181S 0.09 TCGA-S3-AA12-01 1 220439952 220439952 G A RAB3GAP2 Intron 0.40 TCGA-S3-AA12-01 1 27106556 27106556 T G ARID1A Missense_Mutation p.L2056R 0.46 probably_damaging(0.998) TCGA-S3-AA12-01 1 3417280 3417280 C T MEGF6 Missense_Mutation p.C875Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-S3-AA12-01 1 40734139 40734139 T C ZMPSTE24 Silent p.L136L 0.46 TCGA-S3-AA12-01 22 32110745 32110745 C A PRR14L Missense_Mutation p.C1027F 0.33 tolerated(0.41) benign(0.002) TCGA-S3-AA12-01 2 136545955 136545955 C T LCT Missense_Mutation p.R1908H 0.52 tolerated_low_confidence(0.57) benign(0.001) TCGA-S3-AA12-01 2 152132176 152132176 T C NMI Silent p.V152V 0.49 TCGA-S3-AA12-01 2 20450139 20450139 G A PUM2 3'UTR 0.61 TCGA-S3-AA12-01 2 220432906 220432907 - G OBSL1 Frame_Shift_Ins p.K385Qfs*23 0.48 TCGA-S3-AA12-01 3 121206221 121206221 A T POLQ Missense_Mutation p.S1853T 0.48 deleterious(0.01) possibly_damaging(0.698) TCGA-S3-AA12-01 3 136055957 136055957 A T STAG1 3'UTR 0.47 TCGA-S3-AA12-01 3 186505333 186505333 G A EIF4A2 Missense_Mutation p.R320Q 0.38 deleterious(0.01) benign(0.086) TCGA-S3-AA12-01 3 48956262 48956262 G T ARIH2OS Silent p.G107G 0.27 TCGA-S3-AA12-01 3 63986065 63986065 A G ATXN7 3'UTR 0.05 TCGA-S3-AA12-01 3 95374538 95374538 C T MTHFD2P1 RNA 0.20 TCGA-S3-AA12-01 4 46042544 46042544 C T GABRG1 3'UTR 0.08 TCGA-S3-AA12-01 4 48490820 48490820 G A SLC10A4 Missense_Mutation p.R393Q 0.33 tolerated(1) benign(0.001) TCGA-S3-AA12-01 4 4865512 4865512 A C MSX1 3'UTR 0.30 TCGA-S3-AA12-01 5 131728298 131728298 G A SLC22A5 Missense_Mutation p.V481I 0.39 tolerated(0.78) benign(0.008) TCGA-S3-AA12-01 5 181757 181757 G A PLEKHG4B Missense_Mutation p.D1155N 0.50 deleterious(0.04) benign(0) TCGA-S3-AA12-01 5 79025549 79025549 G A CMYA5 Missense_Mutation p.E321K 0.55 benign(0) TCGA-S3-AA12-01 6 168307843 168307854 CCATGTAGAGCA - MLLT4 Splice_Site p.X551_splice 0.81 TCGA-S3-AA12-01 7 131185152 131185152 C A PODXL 3'Flank 0.43 TCGA-S3-AA12-01 7 21893972 21893972 G T DNAH11 Missense_Mutation p.A3708S 0.40 benign(0.351) TCGA-S3-AA12-01 7 2294727 2294727 C T SNX8 Silent p.P454P 0.41 TCGA-S3-AA12-01 8 105502846 105502846 A T LRP12 3'UTR 0.22 TCGA-S3-AA12-01 8 38067801 38067801 G C BAG4 Missense_Mutation p.E388D 0.04 tolerated(0.05) probably_damaging(0.996) TCGA-S3-AA12-01 8 623369 623369 T A ERICH1 Missense_Mutation p.E328V 0.80 deleterious(0) probably_damaging(0.994) TCGA-S3-AA12-01 9 12698484 12698484 T C TYRP1 Missense_Mutation p.Y248H 0.59 deleterious(0) probably_damaging(0.997) TCGA-S3-AA12-01 9 139342933 139342933 G A SEC16A Intron 0.11 TCGA-S3-AA12-01 9 82321812 82321812 C T TLE4 Missense_Mutation p.L312F 0.07 tolerated(0.35) benign(0.273) TCGA-S3-AA12-01 X 1428507 1428507 C T CSF2RA 3'UTR 0.52 TCGA-S3-AA12-01 X 48847494 48847494 G A GRIPAP1 Silent p.A162A 0.55 TCGA-S3-AA12-01 X 69626758 69626758 G T KIF4A Missense_Mutation p.V1030F 0.45 tolerated(0.86) benign(0.001) TCGA-S3-AA12-01 X 70587418 70587418 A G TAF1 Missense_Mutation p.N84D 0.11 tolerated(0.54) benign(0.157) TCGA-S3-AA12-01 X 86087340 86087340 C A DACH2 3'UTR 0.39 TCGA-S3-AA14-01 13 101257072 101257072 C A TMTC4 3'UTR 0.29 TCGA-S3-AA14-01 13 101257101 101257101 A C TMTC4 3'UTR 0.21 TCGA-S3-AA14-01 14 77242345 77242345 G A VASH1 Missense_Mutation p.R214H 0.08 tolerated(0.15) benign(0.027) TCGA-S3-AA14-01 16 19548053 19548053 C T CCP110 Silent p.I354I 0.12 TCGA-S3-AA14-01 17 36633862 36633862 G A ARHGAP23 Missense_Mutation p.A721T 0.15 deleterious(0.04) benign(0.028) TCGA-S3-AA14-01 17 46928928 46928928 G A CALCOCO2 Missense_Mutation p.E238K 0.13 tolerated(0.08) probably_damaging(0.994) TCGA-S3-AA14-01 17 5078091 5078091 G A USP6 3'UTR 0.34 TCGA-S3-AA14-01 18 60792148 60792148 C T BCL2 3'UTR 0.12 TCGA-S3-AA14-01 19 19369537 19369537 G A HAPLN4 Silent p.D204D 0.29 TCGA-S3-AA14-01 19 53855577 53855577 C G ZNF845 Missense_Mutation p.P550R 0.09 deleterious(0) probably_damaging(0.967) TCGA-S3-AA14-01 19 643333 643333 G C FGF22 Missense_Mutation p.G105R 0.27 deleterious(0) probably_damaging(1) TCGA-S3-AA14-01 22 50879451 50879451 G A PPP6R2 Missense_Mutation p.G833S 0.31 tolerated(0.47) benign(0.004) TCGA-S3-AA14-01 2 98914457 98914457 C T VWA3B Missense_Mutation p.T1082M 0.14 tolerated(0.15) benign(0.085) TCGA-S3-AA14-01 3 164697010 164697010 C T SI 3'UTR 0.33 TCGA-S3-AA14-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.26 deleterious(0.04) probably_damaging(0.96) TCGA-S3-AA14-01 3 184105785 184105785 C T CHRD Missense_Mutation p.R840C 0.25 deleterious(0) probably_damaging(1) TCGA-S3-AA14-01 4 15054040 15054040 C T CPEB2 Missense_Mutation p.R735C 0.09 deleterious_low_confidence(0.01) benign(0.106) TCGA-S3-AA14-01 5 56178459 56178460 - A MAP3K1 Frame_Shift_Ins p.T1145Nfs*6 0.27 TCGA-S3-AA14-01 5 56180654 56180654 G A MAP3K1 Splice_Site p.X1328_splice 0.19 TCGA-S3-AA14-01 5 74677870 74677870 T A COL4A3BP Missense_Mutation p.L635F 0.26 deleterious(0) probably_damaging(0.993) TCGA-S3-AA14-01 5 82835750 82835750 G C VCAN Missense_Mutation p.E2310Q 0.18 deleterious(0.03) benign(0.327) TCGA-S3-AA14-01 6 31936680 31936680 G A SKIV2L Silent p.A1071A 0.49 TCGA-S3-AA14-01 6 43098054 43098054 C T PTK7 Missense_Mutation p.T194M 0.15 deleterious(0.03) benign(0.269) TCGA-S3-AA14-01 X 118715351 118715351 C G UBE2A Intron 0.14 TCGA-S3-AA14-01 X 77268549 77268549 C G ATP7A Missense_Mutation p.D782E 0.17 tolerated(0.12) probably_damaging(0.999) TCGA-S3-AA15-01 10 1058539 1058539 G A GTPBP4 Silent p.L493L 0.06 TCGA-S3-AA15-01 10 115947593 115947593 G A TDRD1 Translation_Start_Site p.M1? 0.05 tolerated_low_confidence(0.16) benign(0.001) TCGA-S3-AA15-01 10 116595331 116595331 C G FAM160B1 Missense_Mutation p.F110L 0.08 deleterious(0) probably_damaging(0.954) TCGA-S3-AA15-01 10 27444286 27444286 G C MASTL 5'Flank 0.10 TCGA-S3-AA15-01 10 28225738 28225738 G C ARMC4 Silent p.L723L 0.10 TCGA-S3-AA15-01 10 72358629 72358629 T A PRF1 Missense_Mutation p.K283M 0.12 deleterious(0) possibly_damaging(0.548) TCGA-S3-AA15-01 10 79010994 79010994 G A KCNMA1 Silent p.L187L 0.07 TCGA-S3-AA15-01 11 118926550 118926550 G A HYOU1 Silent p.L33L 0.09 TCGA-S3-AA15-01 11 14300269 14300269 T C RRAS2 3'Flank 0.09 TCGA-S3-AA15-01 11 47356658 47356658 T G MYBPC3 Missense_Mutation p.H947P 0.06 tolerated(0.07) possibly_damaging(0.74) TCGA-S3-AA15-01 11 65655829 65655829 G A FIBP Missense_Mutation p.R21C 0.09 deleterious(0) possibly_damaging(0.761) TCGA-S3-AA15-01 12 105561237 105561237 C G KIAA1033 3'UTR 0.10 TCGA-S3-AA15-01 12 72317723 72317723 C G TBC1D15 3'UTR 0.07 TCGA-S3-AA15-01 12 99138923 99138923 C G ANKS1B Intron 0.08 TCGA-S3-AA15-01 13 31034424 31034424 A - HMGB1 3'UTR 0.08 TCGA-S3-AA15-01 14 24473618 24473618 G A DHRS4L2 Intron 0.08 TCGA-S3-AA15-01 14 24649074 24649074 C T REC8 Missense_Mutation p.P506L 0.19 deleterious(0.01) benign(0.121) TCGA-S3-AA15-01 14 78205313 78205313 T A SNW1 Missense_Mutation p.K141I 0.07 tolerated(0.12) benign(0.011) TCGA-S3-AA15-01 14 96770841 96770841 C G ATG2B Missense_Mutation p.Q1611H 0.05 deleterious(0.01) probably_damaging(0.964) TCGA-S3-AA15-01 15 63128103 63128103 C G TLN2 Missense_Mutation p.A2402G 0.07 deleterious(0) probably_damaging(0.949) TCGA-S3-AA15-01 15 65346506 65346506 G C RASL12 3'UTR 0.19 TCGA-S3-AA15-01 15 81650777 81650777 G A TMC3 Missense_Mutation p.S189F 0.07 deleterious(0) possibly_damaging(0.62) TCGA-S3-AA15-01 17 34797334 34797334 C T TBC1D3G 3'UTR 0.11 TCGA-S3-AA15-01 17 34797350 34797350 C T TBC1D3G 3'UTR 0.10 TCGA-S3-AA15-01 17 41243563 41243563 C A BRCA1 Nonsense_Mutation p.E1329* 0.05 TCGA-S3-AA15-01 17 70645339 70645339 C G SLC39A11 Missense_Mutation p.G254A 0.06 tolerated(1) benign(0.085) TCGA-S3-AA15-01 17 7492827 7492827 G C SOX15 Missense_Mutation p.F56L 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-S3-AA15-01 19 15218308 15218308 A - SYDE1 Frame_Shift_Del p.K23Sfs*74 0.16 TCGA-S3-AA15-01 19 15288412 15288412 C T NOTCH3 Missense_Mutation p.D1443N 0.08 tolerated(0.05) probably_damaging(0.977) TCGA-S3-AA15-01 19 22940335 22940335 T C ZNF99 Silent p.E792E 0.05 TCGA-S3-AA15-01 19 48789109 48789109 C G ZNF114 Silent p.L76L 0.07 TCGA-S3-AA15-01 19 50183761 50183761 G A PRMT1 Silent p.A36A 0.07 TCGA-S3-AA15-01 19 52519441 52519441 G A ZNF614 Silent p.L470L 0.08 TCGA-S3-AA15-01 1 155785854 155785854 G A GON4L Intron 0.10 TCGA-S3-AA15-01 1 161044459 161044459 G A PVRL4 Silent p.V314V 0.11 TCGA-S3-AA15-01 1 176832392 176832392 A C ASTN1 3'UTR 0.08 TCGA-S3-AA15-01 1 206653791 206653791 G A IKBKE Missense_Mutation p.E448K 0.17 tolerated(0.14) benign(0.272) TCGA-S3-AA15-01 20 61297851 61297851 C A SLCO4A1 Missense_Mutation p.L466M 0.12 tolerated(0.05) possibly_damaging(0.841) TCGA-S3-AA15-01 21 40714252 40714254 CTG ACTC HMGN1 3'UTR 0.14 TCGA-S3-AA15-01 22 20102205 20102205 C G TRMT2A Missense_Mutation p.K375N 0.10 tolerated(0.07) benign(0.003) TCGA-S3-AA15-01 22 25152630 25152630 C T PIWIL3 Missense_Mutation p.R133Q 0.09 tolerated(0.09) benign(0.024) TCGA-S3-AA15-01 2 160139216 160139216 A T WDSUB1 Missense_Mutation p.V122D 0.07 deleterious(0.04) possibly_damaging(0.776) TCGA-S3-AA15-01 2 183960382 183960382 C T DUSP19 Missense_Mutation p.S217L 0.10 deleterious_low_confidence(0) benign(0.014) TCGA-S3-AA15-01 2 242613187 242613187 A G ATG4B 3'UTR 0.05 TCGA-S3-AA15-01 3 178561923 178561923 G C KCNMB2 3'UTR 0.05 TCGA-S3-AA15-01 3 185229438 185229438 C A LIPH Missense_Mutation p.R381I 0.06 deleterious(0.04) benign(0.284) TCGA-S3-AA15-01 3 38908848 38908848 G A SCN11A Silent p.G1305G 0.04 TCGA-S3-AA15-01 3 52874374 52874374 G C TMEM110 3'UTR 0.10 TCGA-S3-AA15-01 4 10542120 10542120 G C CLNK Silent p.P200P 0.05 TCGA-S3-AA15-01 5 131411805 131411805 C G CSF2 3'UTR 0.13 TCGA-S3-AA15-01 5 43492939 43492939 G C C5orf34 Silent p.L456L 0.05 TCGA-S3-AA15-01 5 85588991 85588991 G C NBPF22P RNA 0.06 TCGA-S3-AA15-01 6 152712566 152712566 C T SYNE1 Missense_Mutation p.R2617Q 0.06 benign(0.02) TCGA-S3-AA15-01 6 34741470 34741470 G A SNRPC 3'UTR 0.06 TCGA-S3-AA15-01 6 56418355 56418355 C G DST Missense_Mutation p.E2456Q 0.06 benign(0.028) TCGA-S3-AA15-01 6 56857269 56857269 G A BEND6 Missense_Mutation p.A72T 0.04 tolerated_low_confidence(0.38) benign(0) TCGA-S3-AA15-01 7 115850620 115850620 C T TES 5'UTR 0.10 TCGA-S3-AA15-01 7 6509235 6509235 G A KDELR2 Missense_Mutation p.P115S 0.07 tolerated(0.4) benign(0.098) TCGA-S3-AA15-01 7 76179141 76179141 C T UPK3B Intron 0.08 TCGA-S3-AA15-01 9 3829352 3829352 C G GLIS3 Missense_Mutation p.D872H 0.07 tolerated(0.34) probably_damaging(0.999) TCGA-S3-AA15-01 9 79319956 79319956 C T PRUNE2 Missense_Mutation p.E2412K 0.12 tolerated(0.37) benign(0.025) TCGA-S3-AA15-01 X 54584906 54584906 G A GNL3L Missense_Mutation p.R495H 0.06 tolerated(0.61) benign(0.002) TCGA-S3-AA15-01 X 91878090 91878090 G A PCDH11X 3'UTR 0.06 TCGA-S3-AA17-01 10 33502275 33502275 G C NRP1 Intron 0.12 TCGA-S3-AA17-01 10 96443388 96443388 A T CYP2C18 5'UTR 0.45 TCGA-S3-AA17-01 11 11373875 11373875 T C CSNK2A3 Silent p.E264E 0.10 TCGA-S3-AA17-01 11 12257739 12257739 G T MICAL2 Nonsense_Mutation p.G671* 0.40 TCGA-S3-AA17-01 11 12965365 12965365 T A TEAD1 3'UTR 0.07 TCGA-S3-AA17-01 11 132288941 132288941 T G OPCML 3'UTR 0.39 TCGA-S3-AA17-01 11 34118064 34118064 C G CAPRIN1 Missense_Mutation p.Q582E 0.10 tolerated(0.44) possibly_damaging(0.681) TCGA-S3-AA17-01 11 45945780 45945780 G C GYLTL1B Missense_Mutation p.W148C 0.33 deleterious(0) probably_damaging(1) TCGA-S3-AA17-01 11 9160522 9160522 C T DENND5A 3'UTR 0.13 TCGA-S3-AA17-01 12 22622720 22622720 T C C2CD5 Missense_Mutation p.D819G 0.08 tolerated(0.11) benign(0.011) TCGA-S3-AA17-01 12 42858941 42858941 G A PRICKLE1 Nonsense_Mutation p.Q299* 0.17 TCGA-S3-AA17-01 12 53292668 53292668 C A KRT8 Missense_Mutation p.A361S 0.14 tolerated(0.06) possibly_damaging(0.841) TCGA-S3-AA17-01 12 81741516 81741516 C G PPFIA2 Missense_Mutation p.L676F 0.15 tolerated(0.1) probably_damaging(0.956) TCGA-S3-AA17-01 13 101725986 101725986 A G NALCN Missense_Mutation p.F1383L 0.19 deleterious(0.03) possibly_damaging(0.547) TCGA-S3-AA17-01 13 28196044 28196044 C A POLR1D 5'UTR 0.21 TCGA-S3-AA17-01 13 32968838 32968864 TCGTCTATTTGTCAGACGAATGTTACA - BRCA2 In_Frame_Del p.F3090_N3099delinsY 0.27 TCGA-S3-AA17-01 14 102378819 102378819 A G PPP2R5C Intron 0.21 TCGA-S3-AA17-01 14 103195523 103195523 C A RCOR1 3'UTR 0.08 TCGA-S3-AA17-01 14 22217869 22217869 A G TRAV5 Missense_Mutation p.M74V 0.34 tolerated(0.96) benign(0.002) TCGA-S3-AA17-01 14 24459566 24459566 A G DHRS4L2 Missense_Mutation p.M102V 0.16 tolerated(0.17) benign(0.001) TCGA-S3-AA17-01 14 52344352 52344352 C T GNG2 Intron 0.16 TCGA-S3-AA17-01 14 59113921 59113921 T C DACT1 3'Flank 0.11 TCGA-S3-AA17-01 14 64065507 64065507 T C WDR89 Missense_Mutation p.K385R 0.22 tolerated(0.12) benign(0.01) TCGA-S3-AA17-01 15 20588654 20588654 A C HERC2P3 RNA 0.14 TCGA-S3-AA17-01 15 92647712 92647712 G C SLCO3A1 Missense_Mutation p.G317R 0.25 tolerated(0.11) possibly_damaging(0.727) TCGA-S3-AA17-01 15 92647713 92647713 G A SLCO3A1 Missense_Mutation p.G317E 0.26 tolerated(0.25) benign(0.434) TCGA-S3-AA17-01 16 20548607 20548607 C G ACSM2B Missense_Mutation p.K569N 0.06 tolerated(0.07) benign(0.079) TCGA-S3-AA17-01 16 71765577 71765577 C G AP1G1 3'Flank 0.21 TCGA-S3-AA17-01 17 35300455 35300455 C T LHX1 3'UTR 0.13 TCGA-S3-AA17-01 17 40975789 40975789 C T BECN1 Missense_Mutation p.R36H 0.22 tolerated(0.07) benign(0.003) TCGA-S3-AA17-01 17 54431233 54431233 G A ANKFN1 Missense_Mutation p.E146K 0.11 deleterious(0) probably_damaging(0.999) TCGA-S3-AA17-01 17 7701021 7701021 G C DNAH2 Missense_Mutation p.V2702L 0.38 benign(0.033) TCGA-S3-AA17-01 17 79894657 79894657 C - PYCR1 Frame_Shift_Del p.A12Lfs*19 0.13 TCGA-S3-AA17-01 17 8379027 8379027 G T MYH10 3'UTR 0.24 TCGA-S3-AA17-01 18 3215101 3215101 G C MYOM1 Missense_Mutation p.Q41E 0.12 deleterious_low_confidence(0.05) benign(0) TCGA-S3-AA17-01 18 50592431 50592431 C T DCC Missense_Mutation p.R386W 0.17 deleterious(0) possibly_damaging(0.555) TCGA-S3-AA17-01 18 74592256 74592256 A C ZNF236 Missense_Mutation p.N389T 0.12 deleterious(0) benign(0.184) TCGA-S3-AA17-01 19 11942739 11942739 C A ZNF440 Missense_Mutation p.H250N 0.15 deleterious(0) probably_damaging(0.998) TCGA-S3-AA17-01 19 16254501 16254501 G T HSH2D 5'Flank 0.17 TCGA-S3-AA17-01 19 22941275 22941275 T G ZNF99 Missense_Mutation p.K479T 0.12 deleterious(0) probably_damaging(0.972) TCGA-S3-AA17-01 19 42592919 42592919 C T POU2F2 3'Flank 0.07 TCGA-S3-AA17-01 19 44636171 44636171 C T ZNF225 Silent p.A468A 0.11 TCGA-S3-AA17-01 19 51532482 51532482 T C KLK12 Intron 0.23 TCGA-S3-AA17-01 19 51561899 51561899 T C KLK13 Missense_Mutation p.I181V 0.22 tolerated(0.28) benign(0.056) TCGA-S3-AA17-01 19 51670995 51670995 C A CTD-3187F8.14 Intron 0.18 TCGA-S3-AA17-01 19 55220518 55220518 C T AC098784.2 3'Flank 0.10 TCGA-S3-AA17-01 19 56935245 56935245 A T ZNF583 Missense_Mutation p.K406N 0.15 deleterious(0) probably_damaging(0.999) TCGA-S3-AA17-01 19 58513777 58513777 G A CTD-2368P22.1 Missense_Mutation p.R100Q 0.32 tolerated_low_confidence(0.13) benign(0.417) TCGA-S3-AA17-01 1 144877264 144877264 C T PDE4DIP Missense_Mutation p.D1475N 0.12 tolerated(0.36) benign(0.16) TCGA-S3-AA17-01 1 145116188 145116188 T C SEC22B RNA 0.21 TCGA-S3-AA17-01 1 151259508 151259508 C T ZNF687 Silent p.D247D 0.19 TCGA-S3-AA17-01 1 151264794 151264794 C A PI4KB 3'UTR 0.18 TCGA-S3-AA17-01 1 151396509 151396509 T C POGZ Missense_Mutation p.K480R 0.17 tolerated(0.87) benign(0.002) TCGA-S3-AA17-01 1 156675179 156675179 G C CRABP2 Silent p.L20L 0.18 TCGA-S3-AA17-01 1 173450470 173450470 G A PRDX6 Missense_Mutation p.G34D 0.08 tolerated(0.07) possibly_damaging(0.838) TCGA-S3-AA17-01 1 193091402 193091402 A C CDC73 Missense_Mutation p.E24D 0.06 tolerated(0.2) benign(0.002) TCGA-S3-AA17-01 1 196197231 196197231 G C KCNT2 3'Flank 0.09 TCGA-S3-AA17-01 1 197407887 197407887 T C CRB1 Intron 0.19 TCGA-S3-AA17-01 1 200878352 200878352 C T C1orf106 Silent p.S262S 0.19 TCGA-S3-AA17-01 1 209797215 209797215 A T LAMB3 Missense_Mutation p.F703I 0.09 tolerated(0.07) possibly_damaging(0.517) TCGA-S3-AA17-01 1 222902105 222902105 G C BROX Missense_Mutation p.E231Q 0.06 deleterious(0.03) benign(0.022) TCGA-S3-AA17-01 1 226564946 226564946 C A PARP1 Nonsense_Mutation p.E602* 0.07 TCGA-S3-AA17-01 1 237982480 237982480 G A RYR2 Missense_Mutation p.A4860T 0.07 probably_damaging(0.945) TCGA-S3-AA17-01 1 237982481 237982481 C T RYR2 Missense_Mutation p.A4860V 0.07 probably_damaging(0.918) TCGA-S3-AA17-01 1 32636320 32636320 T - KPNA6 Frame_Shift_Del p.I479Mfs*26 0.18 TCGA-S3-AA17-01 1 34037276 34037276 T C CSMD2 Missense_Mutation p.R2607G 0.16 deleterious(0) probably_damaging(0.988) TCGA-S3-AA17-01 1 89290021 89290021 G A PKN2 Missense_Mutation p.D791N 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-S3-AA17-01 1 94354133 94354133 A G GCLM 3'UTR 0.25 TCGA-S3-AA17-01 20 31437743 31437743 G A MAPRE1 3'UTR 0.13 TCGA-S3-AA17-01 20 34535455 34535455 C T PHF20 Missense_Mutation p.P982L 0.10 deleterious(0) probably_damaging(0.999) TCGA-S3-AA17-01 20 3677240 3677240 C G SIGLEC1 Missense_Mutation p.Q892H 0.06 tolerated(0.19) benign(0.02) TCGA-S3-AA17-01 20 54824216 54824216 T A MC3R Missense_Mutation p.L106Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-S3-AA17-01 22 29837459 29837459 C A RFPL1 Intron 0.08 TCGA-S3-AA17-01 22 32134582 32134582 G A PRR14L Missense_Mutation p.P89S 0.07 tolerated(0.14) probably_damaging(0.986) TCGA-S3-AA17-01 22 40805224 40805224 C G SGSM3 Intron 0.18 TCGA-S3-AA17-01 22 44583663 44583663 T A PARVG Missense_Mutation p.M51K 0.10 deleterious(0) benign(0.016) TCGA-S3-AA17-01 2 101886042 101886042 T C CNOT11 3'UTR 0.10 TCGA-S3-AA17-01 2 210596196 210596196 C T MAP2 3'UTR 0.15 TCGA-S3-AA17-01 2 211518798 211518798 A G CPS1 Missense_Mutation p.E1183G 0.12 deleterious(0) probably_damaging(0.999) TCGA-S3-AA17-01 2 213886806 213886806 C T IKZF2 Missense_Mutation p.R208H 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-S3-AA17-01 2 220370400 220370400 G T GMPPA Intron 0.31 TCGA-S3-AA17-01 2 223918369 223918369 A G KCNE4 3'UTR 0.18 TCGA-S3-AA17-01 2 238303849 238303849 T A COL6A3 Splice_Site p.X31_splice 0.21 TCGA-S3-AA17-01 2 238666121 238666121 A G LRRFIP1 Intron 0.07 TCGA-S3-AA17-01 2 43801868 43801868 G A THADA Nonsense_Mutation p.R446* 0.19 TCGA-S3-AA17-01 2 86718120 86718120 C T KDM3A Silent p.G1230G 0.08 TCGA-S3-AA17-01 3 122642504 122642504 G A SEMA5B Missense_Mutation p.A465V 0.29 deleterious(0) benign(0.381) TCGA-S3-AA17-01 3 129180137 129180137 C T IFT122 Silent p.S164S 0.24 TCGA-S3-AA17-01 3 133670109 133670109 C T SLCO2A1 Silent p.L268L 0.07 TCGA-S3-AA17-01 3 134362222 134362222 T A KY Splice_Site p.X67_splice 0.32 TCGA-S3-AA17-01 3 156170720 156170720 G A KCNAB1 Missense_Mutation p.D118N 0.18 tolerated(0.05) probably_damaging(0.958) TCGA-S3-AA17-01 3 180320062 180320062 C T TTC14 Missense_Mutation p.L5F 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-S3-AA17-01 3 184910954 184910954 G A EHHADH Missense_Mutation p.S411L 0.08 deleterious(0) probably_damaging(1) TCGA-S3-AA17-01 3 185689473 185689473 G A RP11-443P15.2 RNA 0.33 TCGA-S3-AA17-01 3 186507349 186507349 G C EIF4A2 3'UTR 0.08 TCGA-S3-AA17-01 3 195518138 195518138 G C MUC4 Missense_Mutation p.P105A 0.22 unknown(0) TCGA-S3-AA17-01 4 155666009 155666009 G C LRAT Missense_Mutation p.Q177H 0.44 deleterious(0) probably_damaging(0.999) TCGA-S3-AA17-01 4 184233565 184233565 C T WWC2 Silent p.D1152D 0.12 TCGA-S3-AA17-01 4 187538927 187538942 GCAATCACCCCACCTT - FAT1 Frame_Shift_Del p.Q2933Pfs*3 0.33 TCGA-S3-AA17-01 4 88116557 88116557 T C KLHL8 Silent p.E45E 0.14 TCGA-S3-AA17-01 5 100147534 100147534 T G ST8SIA4 3'UTR 0.10 TCGA-S3-AA17-01 5 175926070 175926070 A G FAF2 Missense_Mutation p.E332G 0.32 tolerated(0.11) benign(0.005) TCGA-S3-AA17-01 5 66480111 66480117 TAGTGTA - CD180 Frame_Shift_Del p.I185Tfs*7 0.16 TCGA-S3-AA17-01 6 10874708 10874708 G T GCM2 Missense_Mutation p.N347K 0.19 deleterious(0.01) benign(0.035) TCGA-S3-AA17-01 6 112435303 112435303 G T LAMA4 Missense_Mutation p.P1768T 0.14 tolerated(0.26) probably_damaging(1) TCGA-S3-AA17-01 6 11735822 11735822 G C ADTRP Missense_Mutation p.A180G 0.17 tolerated(0.5) benign(0.005) TCGA-S3-AA17-01 6 117715510 117715510 C A ROS1 Splice_Site p.X327_splice 0.09 TCGA-S3-AA17-01 6 12126038 12126038 A T HIVEP1 Missense_Mutation p.I2004L 0.17 deleterious(0.05) benign(0.002) TCGA-S3-AA17-01 6 13295087 13295087 G T TBC1D7 Intron 0.31 TCGA-S3-AA17-01 6 166845884 166845891 CTCACATC - RPS6KA2 Splice_Site p.X482_splice 0.14 TCGA-S3-AA17-01 6 22147494 22147494 G A CASC15 RNA 0.17 TCGA-S3-AA17-01 6 29974831 29974831 A C ZNRD1-AS1 Intron 0.15 TCGA-S3-AA17-01 6 30620455 30620455 G A C6orf136 Silent p.L446L 0.18 TCGA-S3-AA17-01 6 37250006 37250006 C G TBC1D22B Missense_Mutation p.P156R 0.18 tolerated(0.06) probably_damaging(0.977) TCGA-S3-AA17-01 6 42650831 42650831 G C UBR2 Missense_Mutation p.G1586A 0.06 tolerated(0.12) benign(0.133) TCGA-S3-AA17-01 6 46626737 46626737 C T SLC25A27 Nonsense_Mutation p.R113* 0.32 TCGA-S3-AA17-01 6 56708078 56708078 A C RP11-472M19.2 5'Flank 0.14 TCGA-S3-AA17-01 6 57075219 57075219 G C RAB23 5'UTR 0.10 TCGA-S3-AA17-01 6 66042108 66042108 T A EYS Intron 0.22 TCGA-S3-AA17-01 6 73111110 73111110 T A RIMS1 3'Flank 0.31 TCGA-S3-AA17-01 6 80625903 80625903 C A ELOVL4 3'UTR 0.33 TCGA-S3-AA17-01 6 84291976 84291976 G A SNAP91 Missense_Mutation p.P705L 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-S3-AA17-01 7 110762844 110762844 C A LRRN3 Missense_Mutation p.L6I 0.17 tolerated(0.21) benign(0.374) TCGA-S3-AA17-01 7 111405250 111405250 A G DOCK4 Missense_Mutation p.I1306T 0.14 deleterious(0) probably_damaging(0.987) TCGA-S3-AA17-01 7 134346376 134346376 G A BPGM Silent p.R39R 0.27 TCGA-S3-AA17-01 7 150698419 150698419 G A NOS3 Nonsense_Mutation p.W445* 0.12 TCGA-S3-AA17-01 7 150764979 150764979 G C SLC4A2 Missense_Mutation p.E329Q 0.14 deleterious(0.01) possibly_damaging(0.788) TCGA-S3-AA17-01 7 16502423 16502447 CTCCAGTACTTTGTTCCATAGCCTC - SOSTDC1 Frame_Shift_Del p.G116Afs*36 0.10 TCGA-S3-AA17-01 7 31867970 31867977 CTCTGCTT - PDE1C Frame_Shift_Del p.E465Afs*10 0.09 TCGA-S3-AA17-01 7 5402422 5402422 C T TNRC18 Silent p.L1418L 0.11 TCGA-S3-AA17-01 7 91793974 91793974 C A LRRD1 Silent p.G181G 0.15 TCGA-S3-AA17-01 7 92164077 92164077 A T RBM48 Silent p.A270A 0.13 TCGA-S3-AA17-01 8 105509858 105509858 C A LRP12 Missense_Mutation p.G308C 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-S3-AA17-01 8 145007175 145007176 AG - PLEC Frame_Shift_Del p.L645Afs*35 0.26 TCGA-S3-AA17-01 8 43216205 43216205 C T POTEA RNA 0.30 TCGA-S3-AA17-01 8 72211333 72211333 G C EYA1 Missense_Mutation p.Q259E 0.15 tolerated(0.3) probably_damaging(0.989) TCGA-S3-AA17-01 8 90936776 90936776 C T OSGIN2 Silent p.Y222Y 0.10 TCGA-S3-AA17-01 8 95942639 95942639 G C TP53INP1 3'UTR 0.21 TCGA-S3-AA17-01 9 129458721 129458721 C T LMX1B Silent p.F404F 0.22 TCGA-S3-AA17-01 9 129957423 129957423 G A RALGPS1 Missense_Mutation p.D322N 0.11 tolerated(0.35) benign(0.334) TCGA-S3-AA17-01 9 130454653 130454653 G A STXBP1 3'UTR 0.36 TCGA-S3-AA17-01 9 27206782 27206782 G C TEK Missense_Mutation p.R856T 0.06 tolerated(0.09) probably_damaging(0.993) TCGA-S3-AA17-01 9 71398220 71398220 C T FAM122A 3'UTR 0.08 TCGA-S3-AA17-01 9 95072879 95072879 T C NOL8 Missense_Mutation p.R851G 0.31 deleterious(0) probably_damaging(0.935) TCGA-S3-AA17-01 X 122551486 122551486 T C GRIA3 Silent p.P578P 0.15 TCGA-S3-AA17-01 X 127184999 127184999 C - ACTRT1 3'UTR 0.17 TCGA-S3-AA17-01 X 127185379 127185387 GCCCAGCTG - ACTRT1 In_Frame_Del p.Q267_G269del 0.23 TCGA-S3-AA17-01 X 135310800 135310800 C A MAP7D3 Missense_Mutation p.R623L 0.16 deleterious(0.03) possibly_damaging(0.569) TCGA-S3-AA17-01 X 136648767 136648767 G A ZIC3 5'UTR 0.11 TCGA-S3-AA17-01 X 155233163 155233163 C G IL9R Missense_Mutation p.I64M 0.17 deleterious(0) probably_damaging(0.999) TCGA-S3-AA17-01 X 37028001 37028001 C T FAM47C Silent p.R506R 0.12 TCGA-S3-AA17-01 X 47435781 47435787 CCAGTTC - SYN1 Frame_Shift_Del p.N334Rfs*72 0.35 TCGA-S3-AA17-01 X 64956731 64956731 A G MSN Missense_Mutation p.E345G 0.28 tolerated(0.19) benign(0.061) TCGA-UL-AAZ6-01 10 102588764 102588764 C T PAX2 3'UTR 0.31 TCGA-UL-AAZ6-01 10 103534507 103534507 C G FGF8 Missense_Mutation p.E107Q 0.10 deleterious(0.03) benign(0.094) TCGA-UL-AAZ6-01 10 104239864 104239864 G A ACTR1A 3'UTR 0.42 TCGA-UL-AAZ6-01 10 19780489 19780489 G T MALRD1 Missense_Mutation p.L1070F 0.40 tolerated(0.1) benign(0.264) TCGA-UL-AAZ6-01 10 33000646 33000646 G C C10ORF68 Missense_Mutation p.E160Q 0.08 deleterious(0.03) possibly_damaging(0.765) TCGA-UL-AAZ6-01 10 70404719 70404719 C T TET1 Nonsense_Mutation p.R745* 0.58 TCGA-UL-AAZ6-01 11 102102833 102102833 C G YAP1 3'UTR 0.27 TCGA-UL-AAZ6-01 11 108062842 108062842 T G NPAT Intron 0.30 TCGA-UL-AAZ6-01 11 118842696 118842696 C T FOXR1 Nonsense_Mutation p.Q19* 0.44 TCGA-UL-AAZ6-01 11 119185224 119185224 G A MCAM Silent p.G178G 0.41 TCGA-UL-AAZ6-01 11 57296325 57296325 G A TIMM10 Silent p.G46G 0.55 TCGA-UL-AAZ6-01 11 64940243 64940243 C T SPDYC Missense_Mutation p.P202L 0.08 tolerated(0.25) benign(0.002) TCGA-UL-AAZ6-01 11 65269272 65269273 AA - MALAT1 RNA 0.18 TCGA-UL-AAZ6-01 11 67430792 67430792 G A ALDH3B2 Missense_Mutation p.P351L 0.07 tolerated(0.18) benign(0.059) TCGA-UL-AAZ6-01 12 121746387 121746387 G C ANAPC5 Missense_Mutation p.H722D 0.09 deleterious(0.04) benign(0.118) TCGA-UL-AAZ6-01 12 125621209 125621209 G T AACS Silent p.V560V 0.23 TCGA-UL-AAZ6-01 12 50571462 50571462 T C LIMA1 Silent p.K556K 0.41 TCGA-UL-AAZ6-01 12 72300839 72300839 T G TBC1D15 Missense_Mutation p.F424L 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-UL-AAZ6-01 12 76742154 76742154 C G BBS10 5'UTR 0.30 TCGA-UL-AAZ6-01 12 89814572 89814572 T C POC1B 3'UTR 0.47 TCGA-UL-AAZ6-01 12 93149699 93149699 A C PLEKHG7 Silent p.R197R 0.24 TCGA-UL-AAZ6-01 12 95927922 95927922 G T USP44 Silent p.S37S 0.23 TCGA-UL-AAZ6-01 12 96974797 96974797 G T C12orf55 Missense_Mutation p.V997F 0.22 deleterious(0) possibly_damaging(0.815) TCGA-UL-AAZ6-01 13 107196118 107196118 T C ARGLU1 3'UTR 0.47 TCGA-UL-AAZ6-01 13 28542867 28542867 C T CDX2 Missense_Mutation p.A93T 0.36 tolerated(0.45) benign(0.097) TCGA-UL-AAZ6-01 13 29674976 29674976 C A MTUS2 Missense_Mutation p.P848H 0.23 deleterious(0) probably_damaging(1) TCGA-UL-AAZ6-01 14 102605592 102605592 C G HSP90AA1 Silent p.L50L 0.49 TCGA-UL-AAZ6-01 14 102606416 102606416 C A WDR20 Missense_Mutation p.F52L 0.43 tolerated(0.18) benign(0.318) TCGA-UL-AAZ6-01 14 34931437 34931437 A T SPTSSA 5'UTR 0.16 TCGA-UL-AAZ6-01 14 65241982 65241982 C T SPTB Missense_Mutation p.R1568K 0.50 tolerated(0.8) benign(0.003) TCGA-UL-AAZ6-01 15 25446340 25446340 C T SNORD115-19 5'Flank 0.16 TCGA-UL-AAZ6-01 15 30653603 30653603 T A CHRFAM7A 3'Flank 0.21 TCGA-UL-AAZ6-01 15 34355754 34355754 C G CHRM5 Missense_Mutation p.S279C 0.54 deleterious(0.05) possibly_damaging(0.855) TCGA-UL-AAZ6-01 15 37100775 37100775 G C C15orf41 3'UTR 0.44 TCGA-UL-AAZ6-01 15 43893705 43893705 C T STRC Silent p.Q1530Q 0.43 TCGA-UL-AAZ6-01 15 59910547 59910547 C G GCNT3 Missense_Mutation p.S37C 0.06 tolerated(0.12) benign(0.235) TCGA-UL-AAZ6-01 15 79586225 79586225 C T ANKRD34C Missense_Mutation p.S200F 0.31 tolerated(0.05) benign(0.002) TCGA-UL-AAZ6-01 15 93043785 93043785 G T C15orf32 3'UTR 0.27 TCGA-UL-AAZ6-01 16 24762100 24762100 A G TNRC6A Missense_Mutation p.D36G 0.12 tolerated_low_confidence(0.06) benign(0.005) TCGA-UL-AAZ6-01 16 24818060 24818060 C A TNRC6A Missense_Mutation p.Q1499K 0.10 tolerated(0.12) benign(0.2) TCGA-UL-AAZ6-01 16 30102572 30102572 G A TBX6 Intron 0.40 TCGA-UL-AAZ6-01 16 30904573 30904573 C T BCL7C Missense_Mutation p.R44H 0.41 deleterious(0) benign(0.165) TCGA-UL-AAZ6-01 16 54967539 54967539 C G IRX5 Silent p.L402L 0.12 TCGA-UL-AAZ6-01 16 67580420 67580420 C G FAM65A 3'UTR 0.05 TCGA-UL-AAZ6-01 16 68961843 68961843 G A TANGO6 Missense_Mutation p.V834I 0.18 tolerated(0.58) benign(0.001) TCGA-UL-AAZ6-01 16 81181764 81181764 G A PKD1L2 RNA 0.23 TCGA-UL-AAZ6-01 16 88782438 88782438 C T PIEZO1 Missense_Mutation p.E2407K 0.21 tolerated(0.25) benign(0.322) TCGA-UL-AAZ6-01 17 21911497 21911497 C A RP11-744K17.9 RNA 0.33 TCGA-UL-AAZ6-01 17 28795433 28795433 T C CPD 3'UTR 0.55 TCGA-UL-AAZ6-01 17 28942925 28942925 T A SMURF2P1 RNA 0.14 TCGA-UL-AAZ6-01 17 29528070 29528070 C G NF1 Missense_Mutation p.P360A 0.25 tolerated(0.09) probably_damaging(0.98) TCGA-UL-AAZ6-01 17 29528431 29528431 C T NF1 Silent p.I396I 0.22 TCGA-UL-AAZ6-01 17 29528497 29528497 C T NF1 Silent p.I418I 0.25 TCGA-UL-AAZ6-01 17 37792293 37792293 A G PPP1R1B 3'UTR 1.00 TCGA-UL-AAZ6-01 17 43037141 43037158 ATCCAGCCCCCAACTCCC - C1QL1 3'UTR 0.19 TCGA-UL-AAZ6-01 17 5276675 5276675 A - RABEP1 Frame_Shift_Del p.S651Vfs*32 0.37 TCGA-UL-AAZ6-01 17 59477869 59477869 C T TBX2 Missense_Mutation p.A111V 0.02 deleterious(0) benign(0.165) TCGA-UL-AAZ6-01 17 60451229 60451229 G A EFCAB3 Splice_Site p.X30_splice 0.05 TCGA-UL-AAZ6-01 17 60678098 60678098 G A TLK2 Missense_Mutation p.R546Q 0.05 deleterious(0) possibly_damaging(0.746) TCGA-UL-AAZ6-01 17 60705235 60705235 C T MRC2 Silent p.C24C 0.14 TCGA-UL-AAZ6-01 17 73518332 73518332 G A TSEN54 Silent p.V390V 0.26 TCGA-UL-AAZ6-01 17 74772485 74772485 C T MFSD11 Intron 0.30 TCGA-UL-AAZ6-01 17 75877994 75877995 GG - FLJ45079 3'UTR 0.18 TCGA-UL-AAZ6-01 17 77042743 77042743 G A C1QTNF1 Missense_Mutation p.A88T 0.22 tolerated(0.21) benign(0.089) TCGA-UL-AAZ6-01 18 5392978 5392978 T G EPB41L3 3'UTR 0.42 TCGA-UL-AAZ6-01 18 74154668 74154668 C T ZNF516 Missense_Mutation p.A115T 0.50 tolerated(1) benign(0.041) TCGA-UL-AAZ6-01 18 8638653 8638653 A T RAB12 3'UTR 0.23 TCGA-UL-AAZ6-01 19 12637501 12637501 T C ZNF564 Missense_Mutation p.E474G 0.55 deleterious(0.03) benign(0.381) TCGA-UL-AAZ6-01 19 18053483 18053483 C T CCDC124 Missense_Mutation p.R60C 0.26 deleterious(0) probably_damaging(0.996) TCGA-UL-AAZ6-01 19 19121060 19121060 C T SUGP2 Missense_Mutation p.D648N 0.30 tolerated(0.22) benign(0.167) TCGA-UL-AAZ6-01 19 39228205 39228205 G A CAPN12 Missense_Mutation p.P347S 0.23 tolerated(0.11) benign(0.357) TCGA-UL-AAZ6-01 19 39423020 39423020 C G MRPS12 Missense_Mutation p.L33V 0.50 tolerated(0.08) possibly_damaging(0.801) TCGA-UL-AAZ6-01 19 54659387 54659387 G A LENG1 3'UTR 0.19 TCGA-UL-AAZ6-01 19 58489681 58489681 C G ZNF606 Missense_Mutation p.E789D 0.32 deleterious(0.03) benign(0.036) TCGA-UL-AAZ6-01 19 58490757 58490757 C T ZNF606 Missense_Mutation p.D431N 0.27 tolerated(0.94) probably_damaging(0.998) TCGA-UL-AAZ6-01 1 150936728 150936728 T G SETDB1 Missense_Mutation p.I1255S 0.29 deleterious(0) possibly_damaging(0.714) TCGA-UL-AAZ6-01 1 154948233 154948233 G A CKS1B Intron 0.21 TCGA-UL-AAZ6-01 1 177929520 177929520 C T SEC16B Missense_Mutation p.E319K 0.16 tolerated(0.69) benign(0.34) TCGA-UL-AAZ6-01 1 181727144 181727144 G C CACNA1E Missense_Mutation p.R1464T 0.05 deleterious(0.04) benign(0.227) TCGA-UL-AAZ6-01 1 181768273 181768273 G A CACNA1E 3'Flank 0.15 TCGA-UL-AAZ6-01 1 181768282 181768282 C A CACNA1E 3'Flank 0.15 TCGA-UL-AAZ6-01 1 202531993 202531993 C A PPP1R12B Silent p.A865A 0.17 TCGA-UL-AAZ6-01 1 236755868 236755868 A G HEATR1 Missense_Mutation p.L420S 0.31 tolerated(0.77) benign(0.011) TCGA-UL-AAZ6-01 1 61921198 61921198 T A NFIA 3'UTR 0.17 TCGA-UL-AAZ6-01 1 65130316 65130316 C A CACHD1 Missense_Mutation p.P693T 0.39 deleterious(0) probably_damaging(0.998) TCGA-UL-AAZ6-01 1 91180106 91180106 G A BARHL2 Missense_Mutation p.T278I 0.48 tolerated(0.13) unknown(0) TCGA-UL-AAZ6-01 1 99764785 99764785 A C LPPR4 Silent p.R245R 0.36 TCGA-UL-AAZ6-01 20 23476530 23476530 G C CST8 Missense_Mutation p.E136D 0.11 tolerated(0.1) benign(0.002) TCGA-UL-AAZ6-01 20 45867619 45867619 G A ZMYND8 Intron 0.05 TCGA-UL-AAZ6-01 20 46275837 46275837 A G NCOA3 Silent p.K1091K 0.05 TCGA-UL-AAZ6-01 20 56226905 56226905 T C PMEPA1 3'UTR 0.12 TCGA-UL-AAZ6-01 21 19638979 19638979 T C CHODL 3'UTR 0.30 TCGA-UL-AAZ6-01 22 22843057 22843057 G A ZNF280B Missense_Mutation p.H223Y 0.56 tolerated(0.47) benign(0.035) TCGA-UL-AAZ6-01 22 24659610 24659610 G A POM121L9P RNA 0.24 TCGA-UL-AAZ6-01 22 50014142 50014142 G T C22orf34 Missense_Mutation p.T179K 0.91 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-UL-AAZ6-01 2 105473337 105473337 C T POU3F3 Missense_Mutation p.R457W 0.30 deleterious(0) probably_damaging(1) TCGA-UL-AAZ6-01 2 152725714 152725714 G A CACNB4 Silent p.F245F 0.22 TCGA-UL-AAZ6-01 2 159651880 159651880 A T DAPL1 5'UTR 0.24 TCGA-UL-AAZ6-01 2 207422201 207422201 C T ADAM23 Silent p.S328S 0.58 TCGA-UL-AAZ6-01 2 212615418 212615418 G A ERBB4 Missense_Mutation p.H190Y 0.39 tolerated(0.12) possibly_damaging(0.715) TCGA-UL-AAZ6-01 2 58386838 58386838 C T FANCL 3'UTR 0.57 TCGA-UL-AAZ6-01 2 73461422 73461422 C A CCT7 5'UTR 0.43 TCGA-UL-AAZ6-01 2 96779650 96779650 G T ADRA2B 3'UTR 0.16 TCGA-UL-AAZ6-01 3 113609511 113609511 C T GRAMD1C Intron 0.22 TCGA-UL-AAZ6-01 3 148847576 148847576 G C HPS3 Silent p.P22P 0.36 TCGA-UL-AAZ6-01 3 154146551 154146551 G T GPR149 Missense_Mutation p.A285D 0.41 tolerated(0.16) benign(0.03) TCGA-UL-AAZ6-01 3 187447215 187447215 C A BCL6 Missense_Mutation p.K326N 0.69 deleterious(0.02) probably_damaging(0.962) TCGA-UL-AAZ6-01 3 189702381 189702381 T A LEPREL1 Splice_Site p.X397_splice 0.30 TCGA-UL-AAZ6-01 3 38655535 38655535 G T SCN5A Missense_Mutation p.L212I 0.45 tolerated(0.07) benign(0.059) TCGA-UL-AAZ6-01 3 49691009 49691009 C G BSN Silent p.V1340V 0.09 TCGA-UL-AAZ6-01 3 93699218 93699218 C G ARL13B 5'UTR 0.36 TCGA-UL-AAZ6-01 4 153897117 153897117 C T FHDC1 Missense_Mutation p.R892W 0.11 deleterious(0) probably_damaging(0.999) TCGA-UL-AAZ6-01 4 56458324 56458324 G C PDCL2 5'UTR 0.48 TCGA-UL-AAZ6-01 4 57215921 57215921 T G AASDH Missense_Mutation p.I666L 0.62 tolerated(0.28) benign(0) TCGA-UL-AAZ6-01 4 68919210 68919210 C A TMPRSS11F 3'UTR 0.24 TCGA-UL-AAZ6-01 5 14871569 14871569 G A ANKH 5'UTR 0.27 TCGA-UL-AAZ6-01 5 176002132 176002132 C A CDHR2 Silent p.A181A 0.19 TCGA-UL-AAZ6-01 5 34867080 34867081 - T TTC23L Frame_Shift_Ins p.R250* 0.33 TCGA-UL-AAZ6-01 5 89986708 89986708 T A GPR98 Missense_Mutation p.N2267K 0.29 benign(0.011) TCGA-UL-AAZ6-01 6 117246674 117246674 T A RFX6 Missense_Mutation p.N579K 0.27 tolerated(0.07) benign(0.042) TCGA-UL-AAZ6-01 6 128403687 128403687 A G PTPRK Missense_Mutation p.F558L 0.12 tolerated(0.1) probably_damaging(0.963) TCGA-UL-AAZ6-01 6 128403712 128403712 A T PTPRK Missense_Mutation p.N549K 0.11 tolerated(1) benign(0.001) TCGA-UL-AAZ6-01 6 155571105 155571105 T C TIAM2 Splice_Site p.X1317_splice 0.22 TCGA-UL-AAZ6-01 6 31510196 31510196 C A DDX39B 5'UTR 0.19 TCGA-UL-AAZ6-01 6 56481680 56481680 A T DST Intron 0.32 TCGA-UL-AAZ6-01 6 72984067 72984068 - A RIMS1 Frame_Shift_Ins p.S1139Ifs*4 0.20 TCGA-UL-AAZ6-01 6 99849459 99849459 T G PNISR Missense_Mutation p.I459L 0.31 tolerated_low_confidence(0.4) benign(0.026) TCGA-UL-AAZ6-01 7 135418772 135418772 G A FAM180A Missense_Mutation p.A158V 0.26 deleterious(0.03) benign(0.165) TCGA-UL-AAZ6-01 7 66764328 66764328 C G Y_RNA 5'Flank 0.19 TCGA-UL-AAZ6-01 7 73010508 73010508 G T MLXIPL Missense_Mutation p.T678K 0.28 deleterious(0) possibly_damaging(0.672) TCGA-UL-AAZ6-01 8 145740623 145740623 G C RECQL4 Missense_Mutation p.T465R 0.29 deleterious(0) probably_damaging(0.995) TCGA-UL-AAZ6-01 8 22863501 22863501 A G RHOBTB2 Missense_Mutation p.I131V 0.31 tolerated(0.18) possibly_damaging(0.756) TCGA-UL-AAZ6-01 8 39872775 39872775 T C IDO2 Missense_Mutation p.L306P 0.53 deleterious(0) probably_damaging(0.998) TCGA-UL-AAZ6-01 8 71126288 71126288 G A NCOA2 Missense_Mutation p.R37C 0.25 deleterious(0) probably_damaging(0.994) TCGA-UL-AAZ6-01 8 82606288 82606288 C A SLC10A5 Missense_Mutation p.R307I 0.16 deleterious(0) probably_damaging(0.966) TCGA-UL-AAZ6-01 9 130270802 130270802 C T FAM129B Missense_Mutation p.V445M 0.47 deleterious(0) probably_damaging(0.984) TCGA-UL-AAZ6-01 9 4635364 4635364 G A SPATA6L Intron 0.31 TCGA-UL-AAZ6-01 X 110538355 110538355 C T DCX 3'UTR 0.36 TCGA-UL-AAZ6-01 X 128640184 128640184 G T SMARCA1 Nonsense_Mutation p.S324* 0.21 TCGA-UL-AAZ6-01 X 153038409 153038409 A T PLXNB3 Silent p.R971R 0.22 TCGA-UL-AAZ6-01 X 20169206 20169206 T A RPS6KA3 3'UTR 0.38 TCGA-UL-AAZ6-01 X 30877760 30877760 C T TAB3 5'UTR 0.47 TCGA-UL-AAZ6-01 X 49855487 49855487 C A CLCN5 Silent p.I768I 0.23 TCGA-UL-AAZ6-01 X 51641412 51641412 A G MAGED1 Silent p.G646G 0.37 TCGA-UL-AAZ6-01 X 71525161 71525161 C T CITED1 Missense_Mutation p.E2K 0.71 deleterious_low_confidence(0.04) unknown(0) TCGA-UL-AAZ6-01 X 79988961 79988961 C T BRWD3 Missense_Mutation p.G374E 0.10 deleterious(0) probably_damaging(0.959) TCGA-UU-A93S-01 10 103989987 103989987 G C PITX3 3'UTR 0.16 TCGA-UU-A93S-01 10 11207100 11207100 G A CELF2 Intron 0.11 TCGA-UU-A93S-01 10 125639774 125639774 G A CPXM2 Missense_Mutation p.A119V 0.13 tolerated(0.22) benign(0.003) TCGA-UU-A93S-01 10 129905157 129905157 A T MKI67 Silent p.V1649V 0.15 TCGA-UU-A93S-01 10 27692158 27692158 G T PTCHD3 Nonsense_Mutation p.S447* 0.30 TCGA-UU-A93S-01 10 31810790 31810790 T C ZEB1 Missense_Mutation p.Y844H 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-UU-A93S-01 10 49951202 49951202 G A WDFY4 Missense_Mutation p.A690T 0.12 deleterious(0.01) probably_damaging(0.929) TCGA-UU-A93S-01 10 50189453 50189453 G C WDFY4 Missense_Mutation p.D3140H 0.06 deleterious(0.01) possibly_damaging(0.868) TCGA-UU-A93S-01 10 61412491 61412491 T C SLC16A9 3'UTR 0.25 TCGA-UU-A93S-01 10 75562248 75562248 C T NDST2 Silent p.S871S 0.17 TCGA-UU-A93S-01 11 105851160 105851160 T G GRIA4 3'UTR 0.17 TCGA-UU-A93S-01 11 113270219 113270219 G A ANKK1 Missense_Mutation p.V510I 0.44 tolerated(0.07) possibly_damaging(0.521) TCGA-UU-A93S-01 11 118395712 118395712 G T KMT2A 3'UTR 0.18 TCGA-UU-A93S-01 11 124481557 124481557 C A PANX3 Missense_Mutation p.D35E 0.10 deleterious(0) probably_damaging(0.996) TCGA-UU-A93S-01 11 129785665 129785665 C T PRDM10 Missense_Mutation p.A810T 0.36 tolerated(0.13) probably_damaging(0.996) TCGA-UU-A93S-01 11 16010668 16010668 C A SOX6 Missense_Mutation p.R594L 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-UU-A93S-01 11 33369286 33369286 C T HIPK3 Missense_Mutation p.L711F 0.18 deleterious(0.02) benign(0.077) TCGA-UU-A93S-01 11 55658747 55658747 C G TRIM51 Missense_Mutation p.A333G 0.34 tolerated(0.09) benign(0.02) TCGA-UU-A93S-01 11 56510347 56510347 T A OR9G4 Missense_Mutation p.E314V 0.45 deleterious(0.04) benign(0.118) TCGA-UU-A93S-01 11 88241656 88241656 C A GRM5 3'UTR 0.21 TCGA-UU-A93S-01 12 111168387 111168387 C T PPP1CC Missense_Mutation p.R122K 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-UU-A93S-01 12 121205354 121205354 G C SPPL3 Missense_Mutation p.I272M 0.34 tolerated(0.55) probably_damaging(0.995) TCGA-UU-A93S-01 12 18243086 18243086 G T RERGL 5'UTR 0.22 TCGA-UU-A93S-01 12 30878985 30878985 G A CAPRIN2 Missense_Mutation p.S607F 0.24 deleterious(0.04) benign(0.048) TCGA-UU-A93S-01 12 48482994 48482994 C T SENP1 Intron 0.32 TCGA-UU-A93S-01 12 49056397 49056397 G T KANSL2 Intron 0.39 TCGA-UU-A93S-01 12 49315197 49315197 C T CCDC65 Missense_Mutation p.P476S 0.34 tolerated(0.13) benign(0.036) TCGA-UU-A93S-01 12 57004213 57004213 G T BAZ2A Missense_Mutation p.Q589K 0.17 deleterious(0) probably_damaging(0.991) TCGA-UU-A93S-01 12 6839939 6839939 T C COPS7A Silent p.P247P 0.16 TCGA-UU-A93S-01 12 7050107 7050107 C T ATN1 Silent p.P1093P 0.20 TCGA-UU-A93S-01 12 8374941 8374941 T A FAM90A1 Missense_Mutation p.K291M 0.29 deleterious(0) probably_damaging(0.984) TCGA-UU-A93S-01 13 23903394 23903394 T G SACS 3'UTR 0.36 TCGA-UU-A93S-01 13 38137315 38137316 - A POSTN 3'UTR 0.39 TCGA-UU-A93S-01 13 39452453 39452453 A G FREM2 Missense_Mutation p.I2952V 0.31 tolerated(0.31) benign(0.1) TCGA-UU-A93S-01 13 70281904 70281904 C T KLHL1 Nonsense_Mutation p.W680* 0.27 TCGA-UU-A93S-01 13 73320215 73320215 G A BORA Splice_Site p.X291_splice 0.16 TCGA-UU-A93S-01 13 79189807 79189807 C G RNF219 Missense_Mutation p.E697Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-UU-A93S-01 13 79940300 79940300 G A RBM26 Missense_Mutation p.P389L 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-UU-A93S-01 14 105964208 105964208 C G C14orf80 Missense_Mutation p.P282R 0.22 tolerated(0.07) benign(0.222) TCGA-UU-A93S-01 14 20898407 20898407 C T KLHL33 Nonsense_Mutation p.W143* 0.17 TCGA-UU-A93S-01 14 51107568 51107568 G A SAV1 Nonsense_Mutation p.Q284* 0.69 TCGA-UU-A93S-01 15 34376504 34376508 TTTGT - EMC7 3'UTR 0.29 TCGA-UU-A93S-01 15 38786927 38786927 C G RASGRP1 Missense_Mutation p.V639L 0.29 tolerated(0.3) benign(0.001) TCGA-UU-A93S-01 15 74468752 74468752 G A ISLR 3'UTR 0.19 TCGA-UU-A93S-01 15 75890774 75890774 C A SNUPN Missense_Mutation p.L336F 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-UU-A93S-01 15 77406782 77406782 G A PEAK1 Missense_Mutation p.R1653W 0.28 deleterious(0) probably_damaging(1) TCGA-UU-A93S-01 15 81595941 81595941 C G IL16 Missense_Mutation p.L1124V 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-UU-A93S-01 16 14042231 14042231 T C ERCC4 3'UTR 0.20 TCGA-UU-A93S-01 16 19127546 19127546 C T ITPRIPL2 3'UTR 0.18 TCGA-UU-A93S-01 16 31202097 31202097 G A FUS Missense_Mutation p.E443K 0.33 deleterious(0.01) possibly_damaging(0.874) TCGA-UU-A93S-01 16 50818321 50818321 C A CYLD Silent p.T636T 0.16 TCGA-UU-A93S-01 16 67292310 67292310 A T SLC9A5 Missense_Mutation p.Y529F 0.13 tolerated(0.06) benign(0.254) TCGA-UU-A93S-01 16 87730203 87730203 G A JPH3 Silent p.L728L 0.17 TCGA-UU-A93S-01 16 89703746 89703746 C T DPEP1 Silent p.C242C 0.25 TCGA-UU-A93S-01 17 16593834 16593834 C T CCDC144A Silent p.Y40Y 0.27 TCGA-UU-A93S-01 17 27185689 27185689 C A ERAL1 Silent p.A269A 0.28 TCGA-UU-A93S-01 17 38349199 38349199 G T RAPGEFL1 Missense_Mutation p.G383V 0.80 deleterious(0) possibly_damaging(0.852) TCGA-UU-A93S-01 17 42992656 42992656 C A GFAP Missense_Mutation p.A67S 0.31 tolerated(0.44) benign(0.031) TCGA-UU-A93S-01 17 53237343 53237343 A T STXBP4 3'UTR 0.09 TCGA-UU-A93S-01 17 56690830 56690830 C T TEX14 Silent p.V325V 0.32 TCGA-UU-A93S-01 17 63223705 63223705 C G RGS9 3'UTR 0.17 TCGA-UU-A93S-01 17 74467904 74467904 G A RHBDF2 Silent p.G794G 0.45 TCGA-UU-A93S-01 17 7578523 7578523 T G TP53 Missense_Mutation p.Q136P 0.62 deleterious(0) probably_damaging(1) TCGA-UU-A93S-01 18 52891205 52891205 T - TCF4 3'Flank 0.20 TCGA-UU-A93S-01 18 6873495 6873495 C T ARHGAP28 Silent p.L189L 0.68 TCGA-UU-A93S-01 19 1107744 1107744 T G SBNO2 3'UTR 0.34 TCGA-UU-A93S-01 19 1112203 1112203 C G SBNO2 Missense_Mutation p.K871N 0.15 deleterious(0) probably_damaging(0.928) TCGA-UU-A93S-01 19 15342592 15342592 C A EPHX3 Missense_Mutation p.E108D 0.15 deleterious(0.01) benign(0.203) TCGA-UU-A93S-01 19 17113153 17113153 G T CPAMD8 Silent p.P274P 0.27 TCGA-UU-A93S-01 19 1828298 1828298 C T REXO1 Missense_Mutation p.G164S 0.59 tolerated(0.9) benign(0.012) TCGA-UU-A93S-01 19 3823402 3823402 C T ZFR2 Splice_Site p.X405_splice 0.12 TCGA-UU-A93S-01 19 40828137 40828137 G C C19orf47 Silent p.P307P 0.17 TCGA-UU-A93S-01 19 41115483 41115483 G T LTBP4 Nonsense_Mutation p.G559* 0.28 TCGA-UU-A93S-01 19 42847638 42847638 C T MEGF8 Missense_Mutation p.A508V 0.33 tolerated(0.21) benign(0.008) TCGA-UU-A93S-01 19 46273099 46273108 GGGGTCCTGT - DMPK 3'UTR 0.22 TCGA-UU-A93S-01 19 49459487 49459487 G A BAX Missense_Mutation p.R89Q 0.22 tolerated(0.54) benign(0.165) TCGA-UU-A93S-01 19 49926579 49926579 C A PTH2 Silent p.V6V 0.18 TCGA-UU-A93S-01 19 50397535 50397535 G T IL4I1 Missense_Mutation p.A208D 0.14 deleterious(0) probably_damaging(0.991) TCGA-UU-A93S-01 19 52034071 52034071 C T SIGLEC6 Silent p.L190L 0.22 TCGA-UU-A93S-01 19 53344567 53344567 T C ZNF468 Missense_Mutation p.Y327C 0.13 deleterious(0.01) probably_damaging(0.966) TCGA-UU-A93S-01 19 53454623 53454623 C T ZNF816 Silent p.L135L 0.22 TCGA-UU-A93S-01 19 56369621 56369621 C G NLRP4 Missense_Mutation p.R288G 0.22 tolerated(0.14) benign(0.018) TCGA-UU-A93S-01 19 9059261 9059261 A G MUC16 Silent p.T9395T 0.35 TCGA-UU-A93S-01 19 9299224 9299224 C A OR7D2 3'UTR 0.17 TCGA-UU-A93S-01 19 9325445 9325445 C A OR7D4 Silent p.L23L 0.13 TCGA-UU-A93S-01 19 9767246 9767246 G C ZNF562 Missense_Mutation p.Q109E 0.32 tolerated(0.84) benign(0) TCGA-UU-A93S-01 1 100154986 100154986 G A PALMD Silent p.E390E 0.77 TCGA-UU-A93S-01 1 151314494 151314494 C G RFX5 3'UTR 0.19 TCGA-UU-A93S-01 1 151314733 151314733 C G RFX5 Missense_Mutation p.D594H 0.15 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-UU-A93S-01 1 154145654 154145654 C T TPM3 Missense_Mutation p.R134Q 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-UU-A93S-01 1 168283568 168283568 C T TBX19 3'UTR 0.22 TCGA-UU-A93S-01 1 169138702 169138706 CTGGC ATT NME7 Frame_Shift_Del p.P360Ifs*16 0.24 TCGA-UU-A93S-01 1 171454755 171454755 C G PRRC2C 5'UTR 0.19 TCGA-UU-A93S-01 1 171956860 171956860 G A DNM3 Silent p.E100E 0.09 TCGA-UU-A93S-01 1 177927361 177927361 G C SEC16B Missense_Mutation p.P424R 0.10 tolerated(0.1) benign(0.004) TCGA-UU-A93S-01 1 197564397 197564397 A T DENND1B Missense_Mutation p.F330I 0.13 deleterious(0) probably_damaging(0.999) TCGA-UU-A93S-01 1 201294089 201294091 GTG TC PKP1 Frame_Shift_Del p.V640Sfs*26 0.11 TCGA-UU-A93S-01 1 202571127 202571127 C A SYT2 Missense_Mutation p.R231L 0.10 deleterious(0) probably_damaging(0.998) TCGA-UU-A93S-01 1 207641975 207641975 T G CR2 Missense_Mutation p.C183W 0.17 deleterious(0) probably_damaging(1) TCGA-UU-A93S-01 1 222712079 222712079 C T HHIPL2 Silent p.V496V 0.07 TCGA-UU-A93S-01 1 222835401 222835401 C G MIA3 Nonsense_Mutation p.S1706* 0.12 TCGA-UU-A93S-01 1 23519054 23519054 G T HTR1D 3'UTR 0.14 TCGA-UU-A93S-01 1 235826144 235826144 C T LYST 3'UTR 0.15 TCGA-UU-A93S-01 1 238048776 238048776 A T ZP4 Missense_Mutation p.Y359N 0.12 tolerated(0.96) benign(0.001) TCGA-UU-A93S-01 1 247162730 247162730 G C ZNF695 Missense_Mutation p.S60C 0.05 deleterious(0.03) possibly_damaging(0.503) TCGA-UU-A93S-01 1 247835614 247835614 C A OR13G1 Missense_Mutation p.V244L 0.52 deleterious(0.01) possibly_damaging(0.506) TCGA-UU-A93S-01 1 248004699 248004699 T C OR11L1 Missense_Mutation p.D167G 0.18 tolerated(0.38) benign(0.183) TCGA-UU-A93S-01 1 248902814 248902814 G T LYPD8 3'UTR 0.25 TCGA-UU-A93S-01 1 26527983 26527983 G T CATSPER4 Missense_Mutation p.L446F 0.17 deleterious(0) probably_damaging(0.937) TCGA-UU-A93S-01 1 39798817 39798817 A T MACF1 Intron 0.20 TCGA-UU-A93S-01 1 4772679 4772679 T - AJAP1 Frame_Shift_Del p.S251Afs*44 0.28 TCGA-UU-A93S-01 1 52889447 52889447 G A ZCCHC11 3'UTR 0.23 TCGA-UU-A93S-01 1 52981629 52981629 C T ZCCHC11 Silent p.E272E 0.15 TCGA-UU-A93S-01 20 3102609 3102609 G C UBOX5 Missense_Mutation p.P226A 0.12 deleterious(0.03) benign(0.009) TCGA-UU-A93S-01 20 44984467 44984467 A G SLC35C2 Missense_Mutation p.S128P 0.23 deleterious(0) possibly_damaging(0.628) TCGA-UU-A93S-01 20 48497483 48497483 C T SLC9A8 Missense_Mutation p.A410V 0.38 deleterious(0) probably_damaging(0.968) TCGA-UU-A93S-01 20 61944475 61944475 G T COL20A1 Missense_Mutation p.V695F 0.27 deleterious(0.01) probably_damaging(0.936) TCGA-UU-A93S-01 20 62607078 62607078 C G SAMD10 Missense_Mutation p.E185Q 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-UU-A93S-01 21 31965034 31965036 CTT - KRTAP6-3 In_Frame_Del p.F84del 0.18 TCGA-UU-A93S-01 22 32011170 32011170 G C SFI1 Missense_Mutation p.G1069R 0.26 tolerated(0.1) possibly_damaging(0.658) TCGA-UU-A93S-01 22 51063829 51063829 T C ARSA Missense_Mutation p.H425R 0.22 deleterious(0) probably_damaging(0.999) TCGA-UU-A93S-01 2 128394973 128394973 C A MYO7B Missense_Mutation p.P2111Q 0.18 deleterious_low_confidence(0.04) benign(0.005) TCGA-UU-A93S-01 2 128394974 128394974 A T MYO7B Silent p.P2111P 0.18 TCGA-UU-A93S-01 2 131519724 131519724 G A AMER3 Missense_Mutation p.V27M 0.26 deleterious(0.02) benign(0.003) TCGA-UU-A93S-01 2 132274462 132274462 G C AC093838.4 RNA 0.27 TCGA-UU-A93S-01 2 136111022 136111022 A C ZRANB3 Silent p.V119V 0.29 TCGA-UU-A93S-01 2 165997318 165997318 C T SCN3A Missense_Mutation p.R621H 0.30 tolerated(0.05) probably_damaging(0.999) TCGA-UU-A93S-01 2 179399497 179399497 T A TTN Missense_Mutation p.T33949S 0.25 TCGA-UU-A93S-01 2 179422628 179422628 A G TTN Silent p.T29151T 0.21 TCGA-UU-A93S-01 2 179700720 179700720 A T CCDC141 Intron 0.27 TCGA-UU-A93S-01 2 179701217 179701217 G C CCDC141 Intron 0.19 TCGA-UU-A93S-01 2 191067945 191067945 T A C2orf88 3'UTR 0.19 TCGA-UU-A93S-01 2 207169594 207169594 T C ZDBF2 Silent p.I114I 0.20 TCGA-UU-A93S-01 2 227872838 227872838 A T COL4A4 Missense_Mutation p.C1569S 0.27 benign(0.132) TCGA-UU-A93S-01 2 239153012 239153012 G T PER2 3'UTR 0.20 TCGA-UU-A93S-01 2 74760272 74760273 TT - HTRA2 3'UTR 0.28 TCGA-UU-A93S-01 3 11078907 11078907 G T SLC6A1 3'UTR 0.25 TCGA-UU-A93S-01 3 120400993 120400993 A T HGD 5'UTR 0.15 TCGA-UU-A93S-01 3 142259752 142259752 C T ATR Missense_Mutation p.C1192Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-UU-A93S-01 3 15079577 15079577 C T NR2C2 Silent p.S500S 0.23 TCGA-UU-A93S-01 3 15719043 15719043 C T ANKRD28 Missense_Mutation p.E882K 0.18 deleterious(0.04) benign(0.009) TCGA-UU-A93S-01 3 172048366 172048366 G C FNDC3B Missense_Mutation p.G472A 0.52 deleterious(0.05) possibly_damaging(0.538) TCGA-UU-A93S-01 3 179082192 179082192 C T MFN1 Missense_Mutation p.T215M 0.49 deleterious(0) possibly_damaging(0.532) TCGA-UU-A93S-01 3 185906034 185906034 C T DGKG Silent p.R684R 0.14 TCGA-UU-A93S-01 3 187003751 187003751 C T MASP1 Silent p.S33S 0.16 TCGA-UU-A93S-01 3 194999993 194999993 T C ACAP2 3'UTR 0.17 TCGA-UU-A93S-01 3 52858205 52858205 C T ITIH4 Splice_Site p.X391_splice 0.29 TCGA-UU-A93S-01 3 81810546 81810546 G C GBE1 Nonsense_Mutation p.Y41* 0.47 TCGA-UU-A93S-01 4 150469724 150469724 C A RP11-526A4.1 RNA 0.20 TCGA-UU-A93S-01 4 15063768 15063768 C A CPEB2 Missense_Mutation p.P921T 0.22 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-UU-A93S-01 4 154388388 154388388 G A KIAA0922 Silent p.V50V 0.24 TCGA-UU-A93S-01 4 17636689 17636689 G T FAM184B Missense_Mutation p.H944Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-UU-A93S-01 4 3319315 3319315 C A RGS12 Missense_Mutation p.T473N 0.52 tolerated(1) benign(0) TCGA-UU-A93S-01 4 3949523 3949523 C T FAM86EP RNA 0.20 TCGA-UU-A93S-01 4 41749553 41749553 A G PHOX2B Missense_Mutation p.V81A 0.31 tolerated(0.07) probably_damaging(0.966) TCGA-UU-A93S-01 4 48887568 48887569 - T OCIAD2 Frame_Shift_Ins p.T133Nfs*3 0.26 TCGA-UU-A93S-01 4 79428686 79428686 G T FRAS1 Missense_Mutation p.G3143V 0.18 probably_damaging(0.967) TCGA-UU-A93S-01 4 8603125 8603125 T A CPZ Missense_Mutation p.F133I 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-UU-A93S-01 5 101813532 101813532 C A SLCO6A1 Missense_Mutation p.C217F 0.31 deleterious(0) probably_damaging(0.997) TCGA-UU-A93S-01 5 121413204 121413204 C T LOX Silent p.P159P 0.28 TCGA-UU-A93S-01 5 133685988 133685988 C T CDKL3 Missense_Mutation p.R164H 0.28 deleterious(0) probably_damaging(1) TCGA-UU-A93S-01 5 140572357 140572357 G C PCDHB10 Missense_Mutation p.D78H 0.24 tolerated_low_confidence(0.05) benign(0.365) TCGA-UU-A93S-01 5 40763058 40763058 C G PRKAA1 Missense_Mutation p.R516P 0.12 tolerated(0.32) benign(0.177) TCGA-UU-A93S-01 5 64965578 64965578 C G SGTB 3'UTR 0.10 TCGA-UU-A93S-01 6 13206365 13206365 A T PHACTR1 Missense_Mutation p.E328V 0.24 deleterious(0) benign(0.139) TCGA-UU-A93S-01 6 27782930 27782930 A T HIST1H2BM Missense_Mutation p.S37C 0.10 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-UU-A93S-01 6 30679722 30679722 G A MDC1 Missense_Mutation p.A666V 0.08 deleterious(0.03) benign(0.221) TCGA-UU-A93S-01 6 3154226 3154226 C G TUBB2A Missense_Mutation p.M403I 0.25 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-UU-A93S-01 6 33608317 33608317 C T ITPR3 Missense_Mutation p.P49L 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-UU-A93S-01 6 42979526 42979526 C T PPP2R5D 3'UTR 0.22 TCGA-UU-A93S-01 7 100679203 100679203 C A MUC17 Silent p.T1502T 0.08 TCGA-UU-A93S-01 7 103629736 103629736 G A RELN Missense_Mutation p.A23V 0.12 tolerated_low_confidence(0.15) benign(0) TCGA-UU-A93S-01 7 113517778 113517778 T A PPP1R3A Nonstop_Mutation p.*1123Yext*21 0.14 TCGA-UU-A93S-01 7 128484828 128484828 C A FLNC Nonsense_Mutation p.C1103* 0.62 TCGA-UU-A93S-01 7 142448535 142448535 A C TRBV29-1 Missense_Mutation p.Q43H 0.22 deleterious(0) probably_damaging(0.985) TCGA-UU-A93S-01 7 18066947 18066947 C T PRPS1L1 Silent p.K153K 0.43 TCGA-UU-A93S-01 7 2255605 2255605 T A MAD1L1 Missense_Mutation p.Q280L 0.23 deleterious(0.01) benign(0.035) TCGA-UU-A93S-01 7 43495983 43495983 C G HECW1 Missense_Mutation p.A863G 0.05 tolerated(0.32) benign(0.005) TCGA-UU-A93S-01 7 44269017 44269017 G T CAMK2B Missense_Mutation p.P437T 0.14 tolerated_low_confidence(0.47) benign(0.005) TCGA-UU-A93S-01 7 75044220 75044220 G A POM121C 3'Flank 0.28 TCGA-UU-A93S-01 7 75933382 75933382 C G HSPB1 Silent p.P170P 0.14 TCGA-UU-A93S-01 8 121457422 121457422 C G MRPL13 5'UTR 0.38 TCGA-UU-A93S-01 8 22547125 22547125 A C EGR3 3'UTR 0.46 TCGA-UU-A93S-01 8 59498273 59498273 C G NSMAF Missense_Mutation p.G897A 0.49 deleterious(0) probably_damaging(1) TCGA-UU-A93S-01 9 100124542 100124542 G A CCDC180 Missense_Mutation p.A1285T 0.21 tolerated(0.6) benign(0.002) TCGA-UU-A93S-01 9 100617680 100617680 C T FOXE1 3'UTR 0.29 TCGA-UU-A93S-01 9 100617767 100617767 G A FOXE1 3'UTR 0.12 TCGA-UU-A93S-01 9 131469028 131469028 C T PKN3 Missense_Mutation p.R150W 0.23 deleterious(0) probably_damaging(0.927) TCGA-UU-A93S-01 9 138416708 138416708 G A LCN1 Missense_Mutation p.E146K 0.23 deleterious(0.01) benign(0.033) TCGA-UU-A93S-01 9 18776882 18776882 C A ADAMTSL1 Silent p.G885G 0.32 TCGA-UU-A93S-01 9 18777600 18777600 C T ADAMTSL1 Missense_Mutation p.R1125C 0.60 deleterious(0.05) possibly_damaging(0.556) TCGA-UU-A93S-01 9 21165965 21165965 C T IFNA21 3'UTR 0.33 TCGA-UU-A93S-01 9 79120675 79120675 C A GCNT1 3'UTR 0.16 TCGA-UU-A93S-01 X 117819748 117819748 C A DOCK11 Missense_Mutation p.S2067Y 0.19 tolerated_low_confidence(0.08) probably_damaging(0.979) TCGA-UU-A93S-01 X 123235022 123235022 T - STAG2 3'UTR 0.11 TCGA-UU-A93S-01 X 123505753 123505753 C A SH2D1A 3'UTR 0.32 TCGA-UU-A93S-01 X 123785836 123785836 C T TENM1 Missense_Mutation p.G503R 0.17 deleterious(0) probably_damaging(1) TCGA-UU-A93S-01 X 144906805 144906808 CTTC TT SLITRK2 3'UTR 0.14 TCGA-UU-A93S-01 X 299350 299350 G A PPP2R3B Silent p.P522P 0.16 TCGA-UU-A93S-01 X 30846553 30846553 A G TAB3 3'UTR 0.20 TCGA-UU-A93S-01 X 44894227 44894227 G A KDM6A Missense_Mutation p.E206K 0.19 deleterious(0) possibly_damaging(0.657) TCGA-UU-A93S-01 X 49645504 49645504 C A USP27X Silent p.I198I 0.14 TCGA-UU-A93S-01 X 49862095 49862095 C G CLCN5 3'UTR 0.16 TCGA-UU-A93S-01 X 62857659 62857659 C A ARHGEF9 3'UTR 0.18 TCGA-UU-A93S-01 X 73751383 73751383 A C SLC16A2 Missense_Mutation p.I539L 0.43 deleterious_low_confidence(0.01) benign(0.01) TCGA-UU-A93S-01 X 74670708 74670708 G T ZDHHC15 Missense_Mutation p.P103H 0.14 deleterious(0.05) benign(0.306) TCGA-UU-A93S-01 X 8507736 8507736 G A KAL1 Missense_Mutation p.T473I 0.13 tolerated(0.13) benign(0.124) TCGA-UU-A93S-01 X 96327980 96327980 G T DIAPH2 Silent p.G697G 0.17 TCGA-V7-A7HQ-01 10 95072800 95072800 T A MYOF Nonsense_Mutation p.K1956* 0.49 TCGA-V7-A7HQ-01 11 1030990 1030990 G T MUC6 Missense_Mutation p.T214N 0.14 unknown(0) TCGA-V7-A7HQ-01 11 66052050 66052050 G C CNIH2 3'Flank 0.33 TCGA-V7-A7HQ-01 12 25254188 25254188 A C LRMP Missense_Mutation p.H273P 0.33 deleterious(0) probably_damaging(0.999) TCGA-V7-A7HQ-01 16 46615537 46615537 C G SHCBP1 3'UTR 0.42 TCGA-V7-A7HQ-01 16 90072882 90072882 C T DBNDD1 Missense_Mutation p.R133Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-V7-A7HQ-01 19 17927755 17927755 G A INSL3 Silent p.T133T 0.58 TCGA-V7-A7HQ-01 19 36210777 36210777 C T KMT2B Silent p.T176T 0.29 TCGA-V7-A7HQ-01 19 4675354 4675354 T C DPP9 3'UTR 0.37 TCGA-V7-A7HQ-01 1 12835221 12835221 A T PRAMEF12 Nonsense_Mutation p.K71* 0.44 TCGA-V7-A7HQ-01 1 152552228 152552228 C T LCE3D Missense_Mutation p.R62Q 0.28 tolerated_low_confidence(0.22) unknown(0) TCGA-V7-A7HQ-01 1 156146244 156146244 C G SEMA4A Missense_Mutation p.P581R 0.26 tolerated(0.22) probably_damaging(0.987) TCGA-V7-A7HQ-01 1 15886044 15886044 C T DNAJC16 Silent p.I349I 0.50 TCGA-V7-A7HQ-01 1 160008789 160008789 A G KCNJ10 3'UTR 0.45 TCGA-V7-A7HQ-01 1 23233227 23233227 G A EPHB2 Missense_Mutation p.G639D 0.09 deleterious(0) probably_damaging(1) TCGA-V7-A7HQ-01 20 3027074 3027074 C G MRPS26 Missense_Mutation p.L90V 0.42 tolerated(0.1) benign(0.009) TCGA-V7-A7HQ-01 22 50589293 50589293 G T MOV10L1 Missense_Mutation p.A953S 0.32 tolerated(0.07) benign(0.256) TCGA-V7-A7HQ-01 2 190332309 190332309 C G WDR75 Silent p.V521V 0.25 TCGA-V7-A7HQ-01 2 64779674 64779674 G - AFTPH Frame_Shift_Del p.E356Kfs*55 0.31 TCGA-V7-A7HQ-01 3 190374352 190374352 C A IL1RAP Missense_Mutation p.H674N 0.30 deleterious_low_confidence(0.02) benign(0.22) TCGA-V7-A7HQ-01 3 195507152 195507152 A G MUC4 Missense_Mutation p.S3767P 0.31 benign(0.316) TCGA-V7-A7HQ-01 4 109588908 109588908 G A OSTC 3'Flank 0.31 TCGA-V7-A7HQ-01 4 122686036 122686036 C G AC079341.1 5'UTR 0.22 TCGA-V7-A7HQ-01 5 56168803 56168804 - A MAP3K1 Nonsense_Mutation p.Y553* 0.31 TCGA-V7-A7HQ-01 5 56177681 56177682 - G MAP3K1 Frame_Shift_Ins p.Q886Afs*18 0.32 TCGA-V7-A7HQ-01 6 107954775 107954775 G A SOBP Missense_Mutation p.G243R 0.38 deleterious(0) probably_damaging(1) TCGA-V7-A7HQ-01 6 168418590 168418590 G C KIF25 Intron 0.54 TCGA-V7-A7HQ-01 6 90604977 90604977 T C GJA10 Missense_Mutation p.Y264H 0.47 tolerated(0.43) benign(0.009) TCGA-V7-A7HQ-01 7 1587402 1587402 C T TMEM184A Missense_Mutation p.A330T 0.48 tolerated(0.1) benign(0.007) TCGA-V7-A7HQ-01 7 44611303 44611303 A C DDX56 Silent p.P226P 0.24 TCGA-V7-A7HQ-01 8 27468031 27468031 C A CLU Missense_Mutation p.V20F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-V7-A7HQ-01 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.20 deleterious(0.01) benign(0.024) TCGA-V7-A7HQ-01 9 102626524 102626524 G A NR4A3 3'UTR 0.22 TCGA-V7-A7HQ-01 X 114425688 114425688 G A RBMXL3 Missense_Mutation p.A562T 0.10 tolerated_low_confidence(0.09) possibly_damaging(0.499) TCGA-W8-A86G-01 11 119216613 119216613 C T MFRP Silent p.G99G 0.34 TCGA-W8-A86G-01 11 59939597 59939597 A T MS4A6A 3'Flank 0.30 TCGA-W8-A86G-01 11 6654234 6654234 A T DCHS1 Missense_Mutation p.F837I 0.22 deleterious(0.04) probably_damaging(0.919) TCGA-W8-A86G-01 12 393307 393307 A T KDM5A 3'UTR 0.06 TCGA-W8-A86G-01 12 51639167 51639167 A T SMAGP 3'UTR 0.13 TCGA-W8-A86G-01 12 51639169 51639169 A T SMAGP 3'UTR 0.15 TCGA-W8-A86G-01 12 51890975 51890975 G A SLC4A8 Intron 0.18 TCGA-W8-A86G-01 13 46039095 46039095 C G COG3 5'UTR 0.15 TCGA-W8-A86G-01 16 68842631 68842632 - T CDH1 Frame_Shift_Ins p.Y190Lfs*9 0.28 TCGA-W8-A86G-01 19 38903629 38903629 G T RASGRP4 Silent p.R493R 0.24 TCGA-W8-A86G-01 19 42753837 42753837 G A ERF Missense_Mutation p.R143C 0.31 deleterious(0) probably_damaging(0.937) TCGA-W8-A86G-01 19 42861703 42861703 G T MEGF8 Missense_Mutation p.V1593L 0.28 tolerated(0.35) benign(0.003) TCGA-W8-A86G-01 19 51379981 51379981 G A KLK2 Missense_Mutation p.A154T 0.33 tolerated(0.21) benign(0.364) TCGA-W8-A86G-01 1 15987483 15987483 A G RSC1A1 Missense_Mutation p.T374A 0.06 tolerated(0.45) benign(0.034) TCGA-W8-A86G-01 1 165624629 165624629 C G MGST3 Missense_Mutation p.A116G 0.17 tolerated(0.18) benign(0.011) TCGA-W8-A86G-01 1 23395041 23395041 G A KDM1A Missense_Mutation p.E397K 0.30 deleterious(0.01) possibly_damaging(0.702) TCGA-W8-A86G-01 20 42698249 42698249 G A TOX2 3'Flank 0.08 TCGA-W8-A86G-01 2 17888608 17888608 C T SMC6 Silent p.K628K 0.05 TCGA-W8-A86G-01 2 32366986 32366986 C T SPAST Missense_Mutation p.R503W 0.10 deleterious(0) probably_damaging(0.947) TCGA-W8-A86G-01 2 99294769 99294770 - A MGAT4A Frame_Shift_Ins p.S87Ffs*3 0.22 TCGA-W8-A86G-01 3 184104513 184104513 C T CHRD Silent p.Y722Y 0.24 TCGA-W8-A86G-01 3 46658697 46658697 C T TDGF1 RNA 0.15 TCGA-W8-A86G-01 5 1225554 1225554 G A SLC6A18 5'UTR 0.30 TCGA-W8-A86G-01 5 132062079 132062079 A C KIF3A Missense_Mutation p.F131C 0.20 deleterious(0) probably_damaging(1) TCGA-W8-A86G-01 5 34933998 34933998 C T DNAJC21 Missense_Mutation p.P59L 0.22 deleterious(0) probably_damaging(0.963) TCGA-W8-A86G-01 6 28104747 28104747 G A ZKSCAN8 5'Flank 0.06 TCGA-W8-A86G-01 7 140156434 140156434 A G MKRN1 Intron 0.11 TCGA-W8-A86G-01 7 141730254 141730254 C T MGAM Silent p.N438N 0.20 TCGA-W8-A86G-01 7 34193012 34193012 A G BMPER 3'UTR 0.05 TCGA-W8-A86G-01 8 1514061 1514061 G A DLGAP2 Splice_Site p.X401_splice 0.27 TCGA-W8-A86G-01 8 2054108 2054108 C T MYOM2 Silent p.D937D 0.19 TCGA-W8-A86G-01 8 30717426 30717426 C G TEX15 Splice_Site 0.20 TCGA-W8-A86G-01 9 106880457 106880457 C T SMC2 Silent p.G599G 0.12 TCGA-W8-A86G-01 9 136532044 136532044 C T SARDH Intron 0.16 TCGA-W8-A86G-01 X 103348849 103348849 G A SLC25A53 3'UTR 0.29 TCGA-W8-A86G-01 X 119514819 119514819 C T ATP1B4 3'UTR 0.18 TCGA-W8-A86G-01 X 69516951 69516951 G T KIF4A Silent p.G113G 0.15 TCGA-WT-AB41-01 10 102020011 102020011 C T CWF19L1 Missense_Mutation p.D85N 0.19 tolerated(0.19) benign(0.005) TCGA-WT-AB41-01 10 11375447 11375447 C T CELF2 3'UTR 0.29 TCGA-WT-AB41-01 10 24508648 24508648 C T KIAA1217 Missense_Mutation p.S55L 0.15 tolerated(0.15) benign(0.009) TCGA-WT-AB41-01 11 14498495 14498495 C T COPB1 Silent p.V475V 0.23 TCGA-WT-AB41-01 11 18636260 18636260 C A SPTY2D1 Missense_Mutation p.G521W 0.28 deleterious(0) probably_damaging(0.994) TCGA-WT-AB41-01 11 18637364 18637364 C T SPTY2D1 Missense_Mutation p.E153K 0.17 tolerated(0.61) benign(0.292) TCGA-WT-AB41-01 11 30937182 30937182 G A DCDC1 Missense_Mutation p.H1177Y 0.27 tolerated(1) benign(0) TCGA-WT-AB41-01 11 66454980 66454980 C T SPTBN2 Missense_Mutation p.E2214K 0.39 tolerated(0.58) benign(0.152) TCGA-WT-AB41-01 12 102590943 102590943 C T PMCH Missense_Mutation p.G86S 0.28 deleterious(0.01) benign(0.26) TCGA-WT-AB41-01 12 103354106 103354106 G A ASCL1 3'UTR 0.31 TCGA-WT-AB41-01 12 123413802 123413802 C T ABCB9 3'UTR 0.07 TCGA-WT-AB41-01 14 36786003 36786003 C T MBIP Missense_Mutation p.D49N 0.29 tolerated(0.17) probably_damaging(0.944) TCGA-WT-AB41-01 14 52781969 52781969 G A PTGER2 Missense_Mutation p.G235R 0.32 tolerated(0.05) possibly_damaging(0.777) TCGA-WT-AB41-01 15 27018810 27018810 C T GABRB3 5'Flank 0.16 TCGA-WT-AB41-01 16 685285 685285 T C C16orf13 Missense_Mutation p.Y139C 0.28 deleterious(0.01) probably_damaging(1) TCGA-WT-AB41-01 17 18284247 18284247 C T EVPLL 5'UTR 0.39 TCGA-WT-AB41-01 17 29685515 29685516 - T NF1 Frame_Shift_Ins p.K2664* 0.18 TCGA-WT-AB41-01 17 31322698 31322698 C T SPACA3 Silent p.F102F 0.26 TCGA-WT-AB41-01 17 48453207 48453207 G A EME1 Missense_Mutation p.C213Y 0.23 tolerated(0.32) benign(0.359) TCGA-WT-AB41-01 17 65212030 65212030 C T HELZ Missense_Mutation p.E78K 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.872) TCGA-WT-AB41-01 17 73736124 73736124 T G ITGB4 Missense_Mutation p.H806Q 0.19 tolerated(0.07) possibly_damaging(0.461) TCGA-WT-AB41-01 17 79098744 79098744 G A AATK Missense_Mutation p.H276Y 0.24 deleterious(0) probably_damaging(0.958) TCGA-WT-AB41-01 18 56054707 56054707 A G NEDD4L Missense_Mutation p.I842V 0.25 deleterious(0.02) benign(0.028) TCGA-WT-AB41-01 19 36276379 36276379 G A ARHGAP33 Missense_Mutation p.G646R 0.21 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-WT-AB41-01 19 38138723 38138723 T C ZFP30 Translation_Start_Site p.M1? 0.06 deleterious(0.02) benign(0.354) TCGA-WT-AB41-01 19 38845367 38845367 C G CATSPERG Missense_Mutation p.L339V 0.21 deleterious(0) possibly_damaging(0.567) TCGA-WT-AB41-01 19 52384073 52384086 CCAGCCTGGAAGCT - ZNF577 5'UTR 0.41 TCGA-WT-AB41-01 19 7987627 7987627 G A SNAPC2 Missense_Mutation p.R328Q 0.13 tolerated(1) benign(0.019) TCGA-WT-AB41-01 1 111863075 111863075 G A CHIA Missense_Mutation p.C473Y 0.33 deleterious(0.01) benign(0.424) TCGA-WT-AB41-01 1 156874563 156874563 C T PEAR1 Missense_Mutation p.S42F 0.24 deleterious(0) probably_damaging(0.933) TCGA-WT-AB41-01 1 181680184 181680184 C T CACNA1E Missense_Mutation p.R384C 0.34 deleterious(0.02) possibly_damaging(0.689) TCGA-WT-AB41-01 1 205091073 205091073 G C RBBP5 5'UTR 0.10 TCGA-WT-AB41-01 1 223177899 223177899 G A DISP1 Missense_Mutation p.V1054I 0.13 tolerated(0.09) benign(0.05) TCGA-WT-AB41-01 1 226074101 226074101 G A LEFTY1 3'UTR 0.13 TCGA-WT-AB41-01 1 27092947 27092947 G A ARID1A Splice_Site p.X960_splice 0.41 TCGA-WT-AB41-01 1 40366523 40366523 G A MYCL Intron 0.21 TCGA-WT-AB41-01 1 42654478 42654478 C T FOXJ3 Silent p.Q525Q 0.30 TCGA-WT-AB41-01 20 33092201 33092201 C T ITCH Missense_Mutation p.H869Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-WT-AB41-01 22 17662787 17662787 G A CECR1 Silent p.F455F 0.11 TCGA-WT-AB41-01 22 22117970 22117970 G A MAPK1 3'UTR 0.14 TCGA-WT-AB41-01 2 113421106 113421106 A C SLC20A1 3'UTR 0.36 TCGA-WT-AB41-01 2 215593374 215593374 T G BARD1 3'UTR 0.42 TCGA-WT-AB41-01 2 225719721 225719721 C T DOCK10 Missense_Mutation p.S616N 0.20 tolerated(1) benign(0.002) TCGA-WT-AB41-01 2 233274646 233274646 G A ALPPL2 3'UTR 0.21 TCGA-WT-AB41-01 2 9545025 9545025 A T ITGB1BP1 3'UTR 0.05 TCGA-WT-AB41-01 3 124632055 124632055 C T MUC13 Missense_Mutation p.A372T 0.14 deleterious(0.04) possibly_damaging(0.487) TCGA-WT-AB41-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.36 tolerated(0.05) possibly_damaging(0.704) TCGA-WT-AB41-01 3 184008850 184008850 G T ECE2 Silent p.G737G 0.16 TCGA-WT-AB41-01 3 184010274 184010274 A G ECE2 3'UTR 0.13 TCGA-WT-AB41-01 3 19575954 19575954 C T KCNH8 3'UTR 0.28 TCGA-WT-AB41-01 4 57211325 57211325 G C AASDH Missense_Mutation p.H874D 0.20 deleterious(0) possibly_damaging(0.882) TCGA-WT-AB41-01 5 1255456 1255456 C T TERT Missense_Mutation p.V1035I 0.16 tolerated(1) benign(0.002) TCGA-WT-AB41-01 5 140024224 140024224 C T TMCO6 Missense_Mutation p.P423S 0.35 tolerated(0.69) benign(0.08) TCGA-WT-AB41-01 6 27420766 27420766 G A ZNF184 Missense_Mutation p.S191L 0.23 deleterious(0.03) benign(0.001) TCGA-WT-AB41-01 6 41250160 41250160 C T TREM1 Missense_Mutation p.D127N 0.16 tolerated(0.24) benign(0.004) TCGA-WT-AB41-01 7 106299687 106299687 C G CCDC71L 3'UTR 0.45 TCGA-WT-AB41-01 7 139026244 139026244 T G LUC7L2 Silent p.L38L 0.32 TCGA-WT-AB41-01 7 143091329 143091329 C A EPHA1 Silent p.L820L 0.20 TCGA-WT-AB41-01 8 12863762 12863762 C T KIAA1456 Silent p.Y17Y 0.58 TCGA-WT-AB41-01 9 136302962 136302962 C T ADAMTS13 Missense_Mutation p.P510L 0.21 tolerated(0.06) benign(0.37) TCGA-WT-AB41-01 9 140707929 140707929 C T EHMT1 Nonsense_Mutation p.Q1043* 0.24 TCGA-WT-AB41-01 9 42368547 42368547 G A ANKRD20A2 Missense_Mutation p.D45N 0.07 tolerated(0.99) possibly_damaging(0.831) TCGA-WT-AB41-01 X 152815670 152815670 G A ATP2B3 Missense_Mutation p.M583I 0.23 deleterious(0) benign(0.232) TCGA-WT-AB41-01 X 53112257 53112257 C A TSPYL2 Silent p.R193R 0.07 TCGA-WT-AB44-01 10 15254193 15254193 A T FAM171A1 3'UTR 0.36 TCGA-WT-AB44-01 10 28821623 28821623 G A WAC 5'Flank 0.20 TCGA-WT-AB44-01 10 5567225 5567225 C T CALML3 Silent p.D59D 0.09 TCGA-WT-AB44-01 10 64415307 64415307 G A ZNF365 Intron 0.14 TCGA-WT-AB44-01 11 101778633 101778633 G A ANGPTL5 Missense_Mutation p.S3F 0.33 tolerated_low_confidence(0.62) benign(0.004) TCGA-WT-AB44-01 11 113144377 113144377 C T NCAM1 Intron 0.44 TCGA-WT-AB44-01 11 114577629 114577629 A G NXPE2 Missense_Mutation p.M553V 0.35 tolerated(0.06) benign(0.005) TCGA-WT-AB44-01 11 116707719 116707719 T C APOA1 Silent p.L66L 0.38 TCGA-WT-AB44-01 11 122850140 122850140 C T BSX Silent p.P96P 0.25 TCGA-WT-AB44-01 11 15993753 15993753 A G SOX6 3'UTR 0.34 TCGA-WT-AB44-01 11 22399705 22399705 C T SLC17A6 3'UTR 0.28 TCGA-WT-AB44-01 11 64536711 64536711 G A SF1 Missense_Mutation p.R380W 0.16 deleterious(0) probably_damaging(0.999) TCGA-WT-AB44-01 12 115118730 115118730 A G TBX3 Missense_Mutation p.F204S 0.39 deleterious(0) probably_damaging(1) TCGA-WT-AB44-01 12 993355 993355 C T WNK1 Missense_Mutation p.P1264S 0.34 deleterious(0) probably_damaging(0.998) TCGA-WT-AB44-01 13 107144418 107144418 C T EFNB2 3'UTR 0.43 TCGA-WT-AB44-01 13 113919097 113919097 G A CUL4A 3'Flank 0.24 TCGA-WT-AB44-01 13 25671741 25671741 C T PABPC3 Nonsense_Mutation p.R469* 0.36 TCGA-WT-AB44-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.52 deleterious(0) probably_damaging(0.999) TCGA-WT-AB44-01 14 75599552 75599555 AGTC - TMED10 3'UTR 0.42 TCGA-WT-AB44-01 16 19129642 19129642 C T ITPRIPL2 3'UTR 0.43 TCGA-WT-AB44-01 16 19129730 19129730 A G ITPRIPL2 3'UTR 0.06 TCGA-WT-AB44-01 16 29821442 29821450 GCAGCGGCA - MAZ 3'UTR 0.23 TCGA-WT-AB44-01 16 30673897 30673897 G A FBRS Missense_Mutation p.A258T 0.10 benign(0.028) TCGA-WT-AB44-01 16 66921577 66921577 T A PDP2 3'UTR 0.77 TCGA-WT-AB44-01 16 67314627 67314627 C T PLEKHG4 Silent p.S171S 0.07 TCGA-WT-AB44-01 16 67644898 67644898 A - CTCF Frame_Shift_Del p.N55Tfs*7 0.40 TCGA-WT-AB44-01 16 68845616 68845617 - AC CDH1 Frame_Shift_Ins p.A289Tfs*6 0.25 TCGA-WT-AB44-01 17 39535819 39535819 C A KRT34 Intron 0.48 TCGA-WT-AB44-01 17 39845281 39845285 ATCGT - EIF1 5'UTR 0.20 TCGA-WT-AB44-01 17 40009934 40009934 G C KLHL11 3'UTR 0.39 TCGA-WT-AB44-01 17 67014558 67014558 C A ABCA9 Missense_Mutation p.K921N 0.24 tolerated(1) benign(0.009) TCGA-WT-AB44-01 18 10697841 10697841 G T PIEZO2 Missense_Mutation p.S2131R 0.07 tolerated(0.31) benign(0.304) TCGA-WT-AB44-01 18 21914263 21914263 T G OSBPL1A Missense_Mutation p.E142D 0.28 deleterious(0.02) possibly_damaging(0.701) TCGA-WT-AB44-01 19 36228565 36228565 C T KMT2B Silent p.L2527L 0.25 TCGA-WT-AB44-01 19 3823291 3823291 C T ZFR2 Missense_Mutation p.A442T 0.16 tolerated(0.19) benign(0.007) TCGA-WT-AB44-01 19 4769214 4769214 C T MIR7-3HG RNA 0.15 TCGA-WT-AB44-01 19 747516 747516 G T PALM 3'UTR 0.20 TCGA-WT-AB44-01 1 114306576 114306576 T A RSBN1 3'UTR 0.08 TCGA-WT-AB44-01 1 154114000 154114000 C A NUP210L Missense_Mutation p.G158V 0.17 deleterious(0) probably_damaging(0.999) TCGA-WT-AB44-01 1 181705505 181705505 G T CACNA1E Missense_Mutation p.E1119D 0.08 tolerated(0.55) benign(0) TCGA-WT-AB44-01 1 22418271 22418271 T A CDC42 3'UTR 0.29 TCGA-WT-AB44-01 1 235875444 235875444 G A LYST Nonsense_Mutation p.R3280* 0.07 TCGA-WT-AB44-01 21 44000648 44000648 A G SLC37A1 3'UTR 0.46 TCGA-WT-AB44-01 22 19808894 19808894 G A GNB1L 5'UTR 0.06 TCGA-WT-AB44-01 22 39138331 39138331 C T SUN2 Missense_Mutation p.R369H 0.10 tolerated(0.15) benign(0.019) TCGA-WT-AB44-01 2 10924570 10924570 C A ATP6V1C2 3'Flank 0.36 TCGA-WT-AB44-01 2 198948758 198948758 G T PLCL1 Nonsense_Mutation p.E173* 0.33 TCGA-WT-AB44-01 2 25456660 25456660 C A DNMT3A 3'UTR 0.22 TCGA-WT-AB44-01 2 27481716 27481716 G A SLC30A3 Missense_Mutation p.P61L 0.41 tolerated(0.14) benign(0.002) TCGA-WT-AB44-01 4 22517294 22517294 C T GPR125 Silent p.A38A 0.10 TCGA-WT-AB44-01 4 8221246 8221246 C A SH3TC1 Silent p.G367G 0.16 TCGA-WT-AB44-01 4 88996668 88996668 G A PKD2 Missense_Mutation p.R910H 0.16 deleterious(0) probably_damaging(0.98) TCGA-WT-AB44-01 5 130797633 130797633 G A RAPGEF6 Missense_Mutation p.R877C 0.16 tolerated(0.09) probably_damaging(1) TCGA-WT-AB44-01 5 140432066 140432066 G A PCDHB1 Silent p.V337V 0.37 TCGA-WT-AB44-01 5 141060057 141060057 G C ARAP3 5'UTR 0.33 TCGA-WT-AB44-01 5 17275456 17275456 C A BASP1 Missense_Mutation p.A44E 0.25 deleterious(0.02) unknown(0) TCGA-WT-AB44-01 5 43161856 43161856 T A ZNF131 Missense_Mutation p.C259S 0.41 deleterious(0) probably_damaging(0.997) TCGA-WT-AB44-01 5 72206422 72206422 T G TNPO1 3'UTR 0.30 TCGA-WT-AB44-01 6 160679606 160679606 G A SLC22A2 Missense_Mutation p.R62C 0.33 deleterious(0) probably_damaging(0.982) TCGA-WT-AB44-01 7 1535068 1535068 C T INTS1 Splice_Site p.X611_splice 0.21 TCGA-WT-AB44-01 7 93538960 93538960 C T GNGT1 Intron 0.06 TCGA-WT-AB44-01 8 86573162 86573162 A C REXO1L1P 3'UTR 0.12 TCGA-WT-AB44-01 9 137804960 137804960 G A FCN1 Missense_Mutation p.R124W 0.11 deleterious(0) possibly_damaging(0.882) TCGA-WT-AB44-01 9 86554321 86554321 A G C9orf64 3'UTR 0.32 TCGA-WT-AB44-01 X 125685973 125685973 C T DCAF12L1 Missense_Mutation p.V207I 0.07 tolerated(0.08) possibly_damaging(0.812) TCGA-XX-A899-01 10 62629277 62629277 C G RHOBTB1 3'UTR 0.08 TCGA-XX-A899-01 10 91143348 91143348 G A IFIT1B Missense_Mutation p.R93K 0.05 tolerated(0.15) benign(0.173) TCGA-XX-A899-01 11 102272655 102272655 G A TMEM123 Missense_Mutation p.S147L 0.74 tolerated(0.1) possibly_damaging(0.504) TCGA-XX-A899-01 11 102272895 102272895 G A TMEM123 Missense_Mutation p.S67F 0.67 deleterious(0) possibly_damaging(0.683) TCGA-XX-A899-01 11 106810561 106810561 G A GUCY1A2 Silent p.C277C 0.03 TCGA-XX-A899-01 11 63668268 63668268 G A MARK2 Missense_Mutation p.R302Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-XX-A899-01 11 67017590 67017590 G A KDM2A Missense_Mutation p.V697M 0.10 tolerated(0.22) benign(0.188) TCGA-XX-A899-01 11 73789683 73789683 C T C2CD3 Silent p.V1360V 0.11 TCGA-XX-A899-01 12 111072582 111072582 A T TCTN1 Missense_Mutation p.R274W 0.21 deleterious(0.01) possibly_damaging(0.749) TCGA-XX-A899-01 12 115118847 115118851 AATTT - TBX3 Frame_Shift_Del p.K164Sfs*10 0.18 TCGA-XX-A899-01 12 128900144 128900144 C T TMEM132C Missense_Mutation p.S318F 0.09 deleterious(0) possibly_damaging(0.605) TCGA-XX-A899-01 14 55511004 55511004 G A SOCS4 Missense_Mutation p.M415I 0.14 deleterious(0) benign(0.169) TCGA-XX-A899-01 14 65054903 65054903 C T PPP1R36 Silent p.L324L 0.08 TCGA-XX-A899-01 14 67826399 67826399 C T ATP6V1D Missense_Mutation p.R6Q 0.10 deleterious(0.05) benign(0.094) TCGA-XX-A899-01 14 88852117 88852117 G A SPATA7 5'UTR 0.07 TCGA-XX-A899-01 15 22383161 22383161 C G OR4N4 Missense_Mutation p.S230C 0.19 deleterious(0.02) benign(0.024) TCGA-XX-A899-01 15 48494952 48494952 G A CTXN2 3'UTR 0.17 TCGA-XX-A899-01 15 59752394 59752394 C T FAM81A Missense_Mutation p.R95W 0.10 deleterious(0) probably_damaging(0.996) TCGA-XX-A899-01 16 2820355 2820355 C T SRRM2 Missense_Mutation p.S2675F 0.05 benign(0.184) TCGA-XX-A899-01 16 4625805 4625805 C G C16orf96 Missense_Mutation p.Q442E 0.09 tolerated(0.24) benign(0.092) TCGA-XX-A899-01 16 57507268 57507268 C T DOK4 3'UTR 0.13 TCGA-XX-A899-01 16 68849628 68849628 C T CDH1 Nonsense_Mutation p.Q511* 0.22 TCGA-XX-A899-01 17 46653961 46653961 G A HOXB4 3'UTR 0.08 TCGA-XX-A899-01 17 56247381 56247381 G A OR4D2 Missense_Mutation p.R122H 0.15 deleterious(0.03) benign(0.035) TCGA-XX-A899-01 17 71198023 71198023 G A COG1 Missense_Mutation p.S686N 0.06 deleterious(0) possibly_damaging(0.883) TCGA-XX-A899-01 17 71198024 71198024 C T COG1 Silent p.S686S 0.06 TCGA-XX-A899-01 18 9887583 9887583 C A TXNDC2 Silent p.P369P 0.16 TCGA-XX-A899-01 19 12384578 12384578 A C ZNF44 Silent p.T212T 0.16 TCGA-XX-A899-01 19 18547173 18547173 G A ISYNA1 Silent p.N242N 0.25 TCGA-XX-A899-01 19 42862967 42862967 C G MEGF8 Nonsense_Mutation p.S1668* 0.10 TCGA-XX-A899-01 19 7964400 7964400 C G LRRC8E Silent p.L331L 0.11 TCGA-XX-A899-01 1 206648264 206648264 G A IKBKE Silent p.L95L 0.10 TCGA-XX-A899-01 20 47874143 47874143 G A ZNFX1 Silent p.I825I 0.15 TCGA-XX-A899-01 22 24813284 24813284 A G SPECC1L 3'UTR 0.21 TCGA-XX-A899-01 22 29706913 29706913 A G GAS2L1 Missense_Mutation p.E312G 0.19 tolerated(0.1) probably_damaging(0.993) TCGA-XX-A899-01 22 31090224 31090224 G A OSBP2 5'Flank 0.13 TCGA-XX-A899-01 2 133541108 133541108 C T NCKAP5 Silent p.L1092L 0.07 TCGA-XX-A899-01 2 133541164 133541164 C T NCKAP5 Missense_Mutation p.E1074K 0.10 tolerated(0.22) probably_damaging(0.987) TCGA-XX-A899-01 2 233899297 233899297 G A NEU2 Missense_Mutation p.E225K 0.09 tolerated(0.63) benign(0.002) TCGA-XX-A899-01 2 234526440 234526440 G A UGT1A8 Silent p.L29L 0.05 TCGA-XX-A899-01 2 242011698 242011698 C G SNED1 Intron 0.47 TCGA-XX-A899-01 3 178916861 178916861 T C PIK3CA Missense_Mutation p.F83S 0.21 deleterious(0.02) benign(0.09) TCGA-XX-A899-01 3 190039899 190039899 A G CLDN1 Missense_Mutation p.Y33H 0.13 deleterious(0) benign(0.009) TCGA-XX-A899-01 3 195509548 195509548 G A MUC4 Missense_Mutation p.S2968L 0.12 benign(0.044) TCGA-XX-A899-01 3 46245240 46245240 G A CCR1 Missense_Mutation p.H189Y 0.09 tolerated(0.76) benign(0.006) TCGA-XX-A899-01 6 150071011 150071011 C T PCMT1 Silent p.L50L 0.12 TCGA-XX-A899-01 6 165746557 165746557 G A PDE10A Missense_Mutation p.S776L 0.08 deleterious_low_confidence(0.05) benign(0.006) TCGA-XX-A899-01 6 27278814 27278814 C T POM121L2 Nonsense_Mutation p.W379* 0.07 TCGA-XX-A899-01 6 2948565 2948565 C T SERPINB6 Silent p.G366G 0.11 TCGA-XX-A899-01 6 30310835 30310835 G A TRIM39 3'UTR 0.14 TCGA-XX-A899-01 6 32053756 32053756 C G TNXB Missense_Mutation p.E973D 0.11 probably_damaging(0.984) TCGA-XX-A899-01 6 71233714 71233714 C T FAM135A Missense_Mutation p.S383F 0.23 deleterious(0) probably_damaging(0.999) TCGA-XX-A899-01 7 131191050 131191050 C T PODXL Missense_Mutation p.R427Q 0.13 tolerated(0.43) benign(0.223) TCGA-XX-A899-01 7 77407669 77407669 G A RSBN1L Missense_Mutation p.R603H 0.08 deleterious(0) probably_damaging(0.999) TCGA-XX-A899-01 8 144802411 144802411 C T MAPK15 Missense_Mutation p.L245F 0.19 tolerated(0.09) probably_damaging(1) TCGA-XX-A899-01 8 38173490 38173490 C A WHSC1L1 Missense_Mutation p.M642I 0.05 tolerated(0.4) benign(0.024) TCGA-XX-A899-01 8 41788246 41788246 A T KAT6A 3'UTR 0.15 TCGA-XX-A899-01 9 124585112 124585112 C G TTLL11 Missense_Mutation p.Q719H 0.06 deleterious(0) probably_damaging(0.973) TCGA-XX-A899-01 9 35842403 35842403 G T TMEM8B 5'UTR 0.19 TCGA-XX-A899-01 X 102333526 102333526 G A NXF3 Silent p.F471F 0.09 TCGA-XX-A899-01 X 50653804 50653804 T C BMP15 Silent p.L7L 0.17 TCGA-XX-A89A-01 10 104210215 104210215 C G C10orf95 Nonstop_Mutation p.*258Sext*50 0.14 TCGA-XX-A89A-01 10 115405620 115405620 G C NRAP Silent p.L358L 0.20 TCGA-XX-A89A-01 10 118689397 118689397 C G KIAA1598 Missense_Mutation p.Q325H 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-XX-A89A-01 10 124399864 124399864 C T DMBT1 Silent p.I2288I 0.28 TCGA-XX-A89A-01 10 135038428 135038428 G T KNDC1 3'UTR 0.24 TCGA-XX-A89A-01 10 17194036 17194036 G C TRDMT1 Intron 0.08 TCGA-XX-A89A-01 10 24809116 24809116 C G KIAA1217 Missense_Mutation p.L748V 0.25 tolerated(0.13) benign(0.045) TCGA-XX-A89A-01 10 26377153 26377153 G A MYO3A Missense_Mutation p.E461K 0.26 deleterious(0) possibly_damaging(0.771) TCGA-XX-A89A-01 10 298852 298852 G A ZMYND11 3'UTR 0.21 TCGA-XX-A89A-01 10 48371396 48371396 C T ZNF488 Silent p.S288S 0.07 TCGA-XX-A89A-01 10 55570376 55570376 A G PCDH15 Missense_Mutation p.L1498P 0.11 deleterious_low_confidence(0) benign(0.02) TCGA-XX-A89A-01 10 74647333 74647333 G A MCU 3'UTR 0.27 TCGA-XX-A89A-01 10 85936321 85936321 G C C10orf99 Silent p.L52L 0.22 TCGA-XX-A89A-01 10 87362144 87362144 G A GRID1 Silent p.N972N 0.37 TCGA-XX-A89A-01 10 89103015 89103015 C G LINC00863 RNA 0.17 TCGA-XX-A89A-01 10 93624219 93624219 G T TNKS2 3'UTR 0.33 TCGA-XX-A89A-01 11 105797578 105797578 T G GRIA4 Silent p.S653S 0.25 TCGA-XX-A89A-01 11 128329509 128329509 C T ETS1 3'UTR 0.30 TCGA-XX-A89A-01 11 16339607 16339627 TTGCTTTTTAAACAGTTGACA - SOX6 Intron 0.23 TCGA-XX-A89A-01 11 1874408 1874408 G A LSP1 Missense_Mutation p.E12K 0.22 tolerated(0.14) probably_damaging(0.978) TCGA-XX-A89A-01 11 1874417 1874417 G C LSP1 Missense_Mutation p.E15Q 0.23 deleterious(0.02) benign(0.355) TCGA-XX-A89A-01 11 533787 533787 A C HRAS Missense_Mutation p.F90C 0.22 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 11 65485895 65485895 G C RNASEH2C 3'UTR 0.43 TCGA-XX-A89A-01 11 66050803 66050803 G C CNIH2 Missense_Mutation p.Q132H 0.05 deleterious(0.05) probably_damaging(0.987) TCGA-XX-A89A-01 11 66108686 66108686 G C BRMS1 Missense_Mutation p.Q117E 0.10 tolerated(0.64) benign(0.051) TCGA-XX-A89A-01 11 66114546 66114546 G A B3GNT1 Silent p.L157L 0.10 TCGA-XX-A89A-01 11 66638243 66638243 C G PC Intron 0.09 TCGA-XX-A89A-01 11 77705638 77705638 G C INTS4 Missense_Mutation p.Q18E 0.05 deleterious(0) benign(0.352) TCGA-XX-A89A-01 11 77921619 77921619 C G USP35 Silent p.V906V 0.03 TCGA-XX-A89A-01 12 104136233 104136233 G C STAB2 Missense_Mutation p.D1978H 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-XX-A89A-01 12 11462306 11462306 G C PRB4 Nonsense_Mutation p.S33* 0.07 TCGA-XX-A89A-01 12 116714926 116714926 G A MED13L Missense_Mutation p.A4V 0.23 tolerated_low_confidence(0.05) unknown(0) TCGA-XX-A89A-01 12 120499562 120499562 G A CCDC64 Missense_Mutation p.E232K 0.22 deleterious(0.01) benign(0.431) TCGA-XX-A89A-01 12 120960035 120960035 C G COQ5 Missense_Mutation p.D112H 0.11 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 12 121132800 121132800 C T MLEC Silent p.V196V 0.23 TCGA-XX-A89A-01 12 1919506 1919506 C T CACNA2D4 Missense_Mutation p.D887N 0.27 tolerated(0.26) benign(0.003) TCGA-XX-A89A-01 12 22354838 22354838 G T ST8SIA1 Nonsense_Mutation p.S240* 0.22 TCGA-XX-A89A-01 12 49222099 49222099 G C CACNB3 3'UTR 0.07 TCGA-XX-A89A-01 12 53298851 53298851 T G KRT8 Intron 0.26 TCGA-XX-A89A-01 12 81101493 81101493 G A MYF6 5'UTR 0.26 TCGA-XX-A89A-01 12 81101810 81101810 G C MYF6 Missense_Mutation p.R104S 0.27 deleterious(0) probably_damaging(0.936) TCGA-XX-A89A-01 12 81768445 81768445 C T PPFIA2 Missense_Mutation p.E412K 0.10 deleterious(0.03) possibly_damaging(0.584) TCGA-XX-A89A-01 12 99145218 99145218 C T ANKS1B Missense_Mutation p.G1196E 0.22 tolerated(0.11) probably_damaging(0.96) TCGA-XX-A89A-01 13 31232368 31232368 C T USPL1 Silent p.V718V 0.28 TCGA-XX-A89A-01 13 67802018 67802018 C G PCDH9 Missense_Mutation p.Q185H 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-XX-A89A-01 13 79173697 79173697 G C POU4F1 3'UTR 0.43 TCGA-XX-A89A-01 13 94958340 94958340 G C GPC6 Missense_Mutation p.R372T 0.32 deleterious(0.05) benign(0.217) TCGA-XX-A89A-01 14 106092243 106092243 G A IGHG4 Missense_Mutation p.P54L 0.19 deleterious(0) probably_damaging(0.935) TCGA-XX-A89A-01 14 107199377 107199377 C G IGHV3-72 Silent p.L5L 0.14 TCGA-XX-A89A-01 14 21853470 21853470 C T CHD8 3'UTR 0.16 TCGA-XX-A89A-01 14 24787676 24787676 G A ADCY4 Silent p.Y1060Y 0.31 TCGA-XX-A89A-01 14 45501482 45501482 C T FAM179B Missense_Mutation p.H1239Y 0.11 deleterious(0.02) benign(0.382) TCGA-XX-A89A-01 14 52433346 52433346 C G GNG2 Missense_Mutation p.P53A 0.17 tolerated(0.23) probably_damaging(1) TCGA-XX-A89A-01 14 57270965 57270965 C G OTX2 Missense_Mutation p.D72H 0.33 deleterious(0) probably_damaging(0.983) TCGA-XX-A89A-01 14 69676861 69676861 C T EXD2 Intron 0.05 TCGA-XX-A89A-01 14 76353251 76353251 C T TTLL5 Intron 0.50 TCGA-XX-A89A-01 14 93151490 93151490 G A RIN3 Missense_Mutation p.V876I 0.20 tolerated(0.08) possibly_damaging(0.697) TCGA-XX-A89A-01 15 40917695 40917695 G C CASC5 Missense_Mutation p.E1771Q 0.23 deleterious(0.02) benign(0.014) TCGA-XX-A89A-01 15 42115998 42115998 G A MAPKBP1 Missense_Mutation p.E1324K 0.27 tolerated(0.25) benign(0.148) TCGA-XX-A89A-01 15 44707455 44707455 C A CASC4 3'UTR 0.26 TCGA-XX-A89A-01 15 48559859 48559859 G A SLC12A1 Silent p.A752A 0.22 TCGA-XX-A89A-01 15 54919232 54919232 C G UNC13C Missense_Mutation p.S2189C 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XX-A89A-01 15 56122160 56122160 C G NEDD4 Missense_Mutation p.E1227Q 0.27 tolerated(0.1) probably_damaging(0.977) TCGA-XX-A89A-01 15 57835935 57835935 G A CGNL1 Silent p.A1111A 0.25 TCGA-XX-A89A-01 15 62169177 62169177 C T VPS13C Missense_Mutation p.E3407K 0.39 tolerated(0.98) possibly_damaging(0.881) TCGA-XX-A89A-01 15 64980063 64980070 CTGAGTTG - OAZ2 3'UTR 0.15 TCGA-XX-A89A-01 15 74494534 74494534 G C STRA6 Missense_Mutation p.I64M 0.26 deleterious(0.03) probably_damaging(0.972) TCGA-XX-A89A-01 15 79589407 79589407 G C ANKRD34C 3'UTR 0.27 TCGA-XX-A89A-01 15 86286727 86286727 C G AKAP13 Missense_Mutation p.S2692C 0.31 deleterious(0.02) probably_damaging(1) TCGA-XX-A89A-01 16 30409732 30409732 C A ZNF48 Missense_Mutation p.F387L 0.21 tolerated(0.05) benign(0.232) TCGA-XX-A89A-01 16 3490894 3490894 G C ZNF597 Missense_Mutation p.Q25E 0.31 deleterious(0) probably_damaging(0.999) TCGA-XX-A89A-01 16 4744363 4744363 C T NUDT16L1 Intron 0.19 TCGA-XX-A89A-01 16 4745112 4745112 G A NUDT16L1 Missense_Mutation p.E190K 0.19 tolerated(0.4) possibly_damaging(0.449) TCGA-XX-A89A-01 16 57601441 57601441 C T GPR114 Silent p.L253L 0.11 TCGA-XX-A89A-01 16 68835794 68835794 C T CDH1 Nonsense_Mutation p.Q129* 0.19 TCGA-XX-A89A-01 17 10307824 10307824 G C MYH8 Missense_Mutation p.F837L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-XX-A89A-01 17 3481003 3481003 G C SHPK Silent p.L534L 0.09 TCGA-XX-A89A-01 17 36348552 36348552 G A TBC1D3 Intron 0.16 TCGA-XX-A89A-01 17 45890978 45890978 C T OSBPL7 Missense_Mutation p.R525H 0.13 tolerated(0.89) benign(0.015) TCGA-XX-A89A-01 17 46606966 46606966 G A HOXB1 Silent p.A283A 0.29 TCGA-XX-A89A-01 17 5463289 5463289 G C NLRP1 Missense_Mutation p.Q243E 0.39 tolerated(0.58) benign(0) TCGA-XX-A89A-01 17 56272394 56272394 C G EPX Missense_Mutation p.L222V 0.44 tolerated(0.05) possibly_damaging(0.512) TCGA-XX-A89A-01 17 79852362 79852362 G A ANAPC11 Silent p.V3V 0.25 TCGA-XX-A89A-01 18 48591888 48591888 G C SMAD4 Missense_Mutation p.D351H 0.31 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 18 61323274 61323274 C T SERPINB3 Missense_Mutation p.E264K 0.34 tolerated(0.06) possibly_damaging(0.464) TCGA-XX-A89A-01 19 13064416 13064416 C G RAD23A 3'UTR 0.25 TCGA-XX-A89A-01 19 14277832 14277832 C G LPHN1 Missense_Mutation p.Q135H 0.16 deleterious(0) possibly_damaging(0.535) TCGA-XX-A89A-01 19 1481714 1481714 C G PCSK4 3'UTR 0.38 TCGA-XX-A89A-01 19 15655003 15655003 A G CYP4F22 Missense_Mutation p.N350S 0.11 deleterious(0.04) benign(0.422) TCGA-XX-A89A-01 19 17531124 17531124 C G MVB12A Missense_Mutation p.I31M 0.24 deleterious(0) probably_damaging(0.989) TCGA-XX-A89A-01 19 33350829 33350829 G A SLC7A9 Missense_Mutation p.T264M 0.09 deleterious(0.04) benign(0.36) TCGA-XX-A89A-01 19 42583877 42583877 C T ZNF574 Silent p.F373F 0.31 TCGA-XX-A89A-01 19 49564750 49564750 C G NTF4 Missense_Mutation p.E169Q 0.26 tolerated(0.69) benign(0.132) TCGA-XX-A89A-01 19 50367320 50367320 G C PNKP Missense_Mutation p.I215M 0.24 deleterious(0.01) probably_damaging(0.952) TCGA-XX-A89A-01 19 51165484 51165484 G C SHANK1 Missense_Mutation p.S2075C 0.27 unknown(0) TCGA-XX-A89A-01 19 53611805 53611805 C T ZNF415 Missense_Mutation p.C498Y 0.27 deleterious(0.02) probably_damaging(0.981) TCGA-XX-A89A-01 19 6495537 6495537 C G TUBB4A Missense_Mutation p.E325Q 0.35 deleterious_low_confidence(0) benign(0.082) TCGA-XX-A89A-01 1 111147056 111147056 C T KCNA2 Missense_Mutation p.E117K 0.16 deleterious(0.03) benign(0.108) TCGA-XX-A89A-01 1 113237126 113237126 C A MOV10 Missense_Mutation p.F449L 0.11 tolerated(0.19) benign(0.042) TCGA-XX-A89A-01 1 120934421 120934421 G C FCGR1B Silent p.L89L 0.34 TCGA-XX-A89A-01 1 142713954 142713954 G C RP11-417J8.6 RNA 0.23 TCGA-XX-A89A-01 1 147380881 147380881 C G GJA8 Missense_Mutation p.Q267E 0.14 tolerated(0.2) benign(0.266) TCGA-XX-A89A-01 1 148591269 148591269 C G NBPF15 Nonsense_Mutation p.S445* 0.24 TCGA-XX-A89A-01 1 151431920 151431920 G A POGZ 5'UTR 0.28 TCGA-XX-A89A-01 1 153965181 153965181 T C NUP210L 3'UTR 0.29 TCGA-XX-A89A-01 1 155106013 155106013 G A EFNA1 Silent p.L141L 0.21 TCGA-XX-A89A-01 1 155106019 155106019 G C EFNA1 Missense_Mutation p.L143F 0.21 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 1 155106240 155106240 G A EFNA1 Silent p.E163E 0.20 TCGA-XX-A89A-01 1 160802493 160802493 G T CD244 Intron 0.22 TCGA-XX-A89A-01 1 172501755 172501755 C G SUCO 5'Flank 0.19 TCGA-XX-A89A-01 1 183209495 183209495 C G LAMC2 Silent p.L1099L 0.10 TCGA-XX-A89A-01 1 19071683 19071683 C G PAX7 3'UTR 0.45 TCGA-XX-A89A-01 1 206762356 206762356 G A RASSF5 3'Flank 0.24 TCGA-XX-A89A-01 1 212151790 212151790 C G INTS7 Missense_Mutation p.E432Q 0.23 tolerated(0.07) benign(0.034) TCGA-XX-A89A-01 1 218520012 218520012 A - TGFB2 5'UTR 0.19 TCGA-XX-A89A-01 1 22216922 22216922 G C HSPG2 Missense_Mutation p.I137M 0.26 possibly_damaging(0.739) TCGA-XX-A89A-01 1 227083305 227083305 A G PSEN2 3'UTR 0.06 TCGA-XX-A89A-01 1 237167580 237167580 C T MT1HL1 Silent p.K31K 0.09 TCGA-XX-A89A-01 1 243254884 243254884 G A RP11-261C10.3 RNA 0.31 TCGA-XX-A89A-01 1 243332975 243332975 C G CEP170 Missense_Mutation p.E600Q 0.23 tolerated(0.1) benign(0.429) TCGA-XX-A89A-01 1 247151206 247151206 C G ZNF695 Missense_Mutation p.R204T 0.25 tolerated(0.09) possibly_damaging(0.872) TCGA-XX-A89A-01 1 247322320 247322320 G A ZNF124 Missense_Mutation p.S69L 0.20 tolerated(0.82) benign(0.01) TCGA-XX-A89A-01 1 37947343 37947343 C T ZC3H12A Missense_Mutation p.S242F 0.30 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 1 55074904 55074904 C G FAM151A 3'UTR 0.10 TCGA-XX-A89A-01 1 65157520 65157520 G A CACHD1 3'UTR 0.25 TCGA-XX-A89A-01 1 67206952 67206952 T A SGIP1 Intron 0.17 TCGA-XX-A89A-01 20 18805957 18805957 C G C20orf78 Missense_Mutation p.W23C 0.25 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-XX-A89A-01 20 43034710 43034710 C G HNF4A Nonsense_Mutation p.S43* 0.19 TCGA-XX-A89A-01 20 5454732 5454732 G C RP5-828H9.1 RNA 0.18 TCGA-XX-A89A-01 20 57567033 57567033 C T NELFCD Missense_Mutation p.S414F 0.25 deleterious(0.01) benign(0.309) TCGA-XX-A89A-01 21 46077978 46077978 G A KRTAP12-3 Missense_Mutation p.V28M 0.27 tolerated(0.07) probably_damaging(0.998) TCGA-XX-A89A-01 21 46918415 46918415 C T COL18A1 Intron 0.25 TCGA-XX-A89A-01 21 47355199 47355199 G A PCBP3 Missense_Mutation p.E297K 0.17 deleterious(0.03) benign(0.303) TCGA-XX-A89A-01 22 18613650 18613650 G A TUBA8 Missense_Mutation p.G366E 0.27 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-XX-A89A-01 22 21796920 21796920 C T HIC2 5'UTR 0.40 TCGA-XX-A89A-01 22 31013349 31013349 C G TCN2 Missense_Mutation p.Q325E 0.35 tolerated(0.77) benign(0.003) TCGA-XX-A89A-01 22 31679165 31679165 C T PIK3IP1 Missense_Mutation p.E233K 0.27 deleterious(0) probably_damaging(0.998) TCGA-XX-A89A-01 22 36745002 36745002 C T MYH9 Missense_Mutation p.E94K 0.32 probably_damaging(1) TCGA-XX-A89A-01 22 37211167 37211167 G A PVALB Silent p.F58F 0.30 TCGA-XX-A89A-01 22 45592363 45592363 C T KIAA0930 3'UTR 0.24 TCGA-XX-A89A-01 22 50722387 50722387 C T PLXNB2 Missense_Mutation p.D766N 0.43 deleterious(0) probably_damaging(0.998) TCGA-XX-A89A-01 2 11427818 11427818 C G ROCK2 Missense_Mutation p.L62F 0.25 deleterious(0.02) benign(0.132) TCGA-XX-A89A-01 2 118698766 118698766 C T CCDC93 Silent p.Q507Q 0.19 TCGA-XX-A89A-01 2 141458069 141458069 C T LRP1B Silent p.L2183L 0.32 TCGA-XX-A89A-01 2 171687651 171687651 G C GAD1 Missense_Mutation p.E166Q 0.14 tolerated(0.24) possibly_damaging(0.747) TCGA-XX-A89A-01 2 186620983 186620983 G C FSIP2 Missense_Mutation p.Q441H 0.11 possibly_damaging(0.769) TCGA-XX-A89A-01 2 18757578 18757578 G A NT5C1B Nonsense_Mutation p.Q461* 0.09 TCGA-XX-A89A-01 2 188211100 188211100 C G CALCRL Missense_Mutation p.W399C 0.09 deleterious(0) probably_damaging(0.984) TCGA-XX-A89A-01 2 190660545 190660545 C G PMS1 Missense_Mutation p.I61M 0.14 deleterious(0) probably_damaging(0.936) TCGA-XX-A89A-01 2 191828276 191828276 G C GLS 3'UTR 0.31 TCGA-XX-A89A-01 2 207173396 207173396 C G ZDBF2 Missense_Mutation p.Q1382E 0.11 tolerated(0.12) benign(0.042) TCGA-XX-A89A-01 2 27121557 27121557 G C DPYSL5 Missense_Mutation p.D64H 0.13 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 2 27700435 27700435 T A IFT172 Missense_Mutation p.E404D 0.16 tolerated(0.4) benign(0.011) TCGA-XX-A89A-01 2 28999802 28999802 C T PPP1CB Silent p.L46L 0.15 TCGA-XX-A89A-01 2 32836564 32836564 G T BIRC6 Missense_Mutation p.C4770F 0.22 probably_damaging(0.99) TCGA-XX-A89A-01 2 47596136 47596136 C T EPCAM 5'Flank 0.12 TCGA-XX-A89A-01 2 47596281 47596281 C G EPCAM 5'Flank 0.22 TCGA-XX-A89A-01 2 63053242 63053242 G A EHBP1 Silent p.R111R 0.11 TCGA-XX-A89A-01 3 10146018 10146018 C T FANCD2OS Missense_Mutation p.M147I 0.09 tolerated(0.24) possibly_damaging(0.888) TCGA-XX-A89A-01 3 111831646 111831646 G C C3orf52 Intron 0.20 TCGA-XX-A89A-01 3 113063554 113063554 C T WDR52 Missense_Mutation p.R1024Q 0.13 tolerated(0.06) probably_damaging(0.953) TCGA-XX-A89A-01 3 113530827 113530827 G C ATP6V1A 3'UTR 0.22 TCGA-XX-A89A-01 3 11871212 11871212 C G TAMM41 Missense_Mutation p.E180Q 0.14 tolerated(0.71) benign(0.004) TCGA-XX-A89A-01 3 128200063 128200063 G A GATA2 Silent p.F414F 0.17 TCGA-XX-A89A-01 3 137729030 137729030 G A CLDN18 5'UTR 0.08 TCGA-XX-A89A-01 3 14861789 14861789 C T FGD5 Missense_Mutation p.A404V 0.29 tolerated_low_confidence(0.22) benign(0.01) TCGA-XX-A89A-01 3 14862277 14862277 G A FGD5 Missense_Mutation p.E567K 0.10 deleterious(0.03) benign(0.437) TCGA-XX-A89A-01 3 150345688 150345689 - T SELT 3'UTR 0.27 TCGA-XX-A89A-01 3 170828644 170828644 C T TNIK Missense_Mutation p.E715K 0.49 deleterious(0.02) probably_damaging(0.983) TCGA-XX-A89A-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.27 deleterious(0.04) probably_damaging(0.96) TCGA-XX-A89A-01 3 180702429 180702429 C T DNAJC19 Silent p.%3D 0.29 TCGA-XX-A89A-01 3 185637273 185637273 C G TRA2B Missense_Mutation p.G245A 0.32 tolerated_low_confidence(0.07) probably_damaging(0.91) TCGA-XX-A89A-01 3 190106151 190106151 C G CLDN16 Missense_Mutation p.F81L 0.34 tolerated(0.15) benign(0.015) TCGA-XX-A89A-01 3 19575949 19575949 G A KCNH8 3'UTR 0.16 TCGA-XX-A89A-01 3 27243978 27243978 G C NEK10 Missense_Mutation p.Q721E 0.35 tolerated(0.12) benign(0.046) TCGA-XX-A89A-01 3 9932335 9932335 C T JAGN1 5'UTR 0.12 TCGA-XX-A89A-01 4 13338163 13338163 G A HSP90AB2P RNA 0.20 TCGA-XX-A89A-01 4 144467970 144467970 C G SMARCA5 Missense_Mutation p.I854M 0.26 deleterious(0.02) possibly_damaging(0.872) TCGA-XX-A89A-01 4 154626251 154626251 C G TLR2 Missense_Mutation p.A731G 0.26 deleterious(0.01) benign(0.367) TCGA-XX-A89A-01 4 16597347 16597347 G A LDB2 Silent p.H129H 0.24 TCGA-XX-A89A-01 4 186353297 186353297 G T C4orf47 Nonsense_Mutation p.E88* 0.26 TCGA-XX-A89A-01 4 20618754 20618754 G A SLIT2 Missense_Mutation p.E1357K 0.29 tolerated(0.27) benign(0.167) TCGA-XX-A89A-01 4 48901920 48901920 G A OCIAD2 Missense_Mutation p.S30L 0.12 deleterious(0) possibly_damaging(0.458) TCGA-XX-A89A-01 5 127466780 127466780 C T SLC12A2 Missense_Mutation p.S357F 0.30 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 5 133657533 133657533 G C CDKL3 Missense_Mutation p.L201V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-XX-A89A-01 5 137759939 137759939 C A KDM3B Missense_Mutation p.S1383Y 0.21 tolerated(0.2) benign(0.117) TCGA-XX-A89A-01 5 140783877 140783877 C G PCDHGA9 Missense_Mutation p.S453C 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.743) TCGA-XX-A89A-01 5 159656542 159656542 C G FABP6 Intron 0.26 TCGA-XX-A89A-01 5 178310586 178310586 G A ZNF354B Missense_Mutation p.G378E 0.14 deleterious(0) probably_damaging(0.98) TCGA-XX-A89A-01 5 50679340 50679340 C G ISL1 5'UTR 0.23 TCGA-XX-A89A-01 5 71501310 71501310 C G MAP1B 3'UTR 0.18 TCGA-XX-A89A-01 5 79945297 79945297 C T DHFR Silent p.V51V 0.28 TCGA-XX-A89A-01 6 100838244 100838244 C T SIM1 Missense_Mutation p.G765E 0.21 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-XX-A89A-01 6 129723588 129723588 G C LAMA2 Missense_Mutation p.E1894D 0.23 deleterious(0) probably_damaging(0.997) TCGA-XX-A89A-01 6 132892378 132892378 G C TAAR6 Missense_Mutation p.M306I 0.22 tolerated(0.38) benign(0.006) TCGA-XX-A89A-01 6 159187344 159187344 A C EZR 3'UTR 0.12 TCGA-XX-A89A-01 6 160176384 160176384 A G WTAP Missense_Mutation p.N311S 0.17 tolerated_low_confidence(0.51) benign(0.269) TCGA-XX-A89A-01 6 160858240 160858240 G A SLC22A3 Missense_Mutation p.E429K 0.27 tolerated(0.17) benign(0.024) TCGA-XX-A89A-01 6 168708657 168708657 C G DACT2 Missense_Mutation p.E594Q 0.22 deleterious(0.04) possibly_damaging(0.523) TCGA-XX-A89A-01 6 26096935 26096935 G A HFE 3'UTR 0.29 TCGA-XX-A89A-01 6 27278976 27278976 G A POM121L2 Missense_Mutation p.P325L 0.09 tolerated(0.96) benign(0.005) TCGA-XX-A89A-01 6 2751095 2751095 C G MYLK4 5'UTR 0.12 TCGA-XX-A89A-01 6 32810002 32810002 G A PSMB8 Missense_Mutation p.S149L 0.20 deleterious(0) possibly_damaging(0.59) TCGA-XX-A89A-01 6 33365898 33365898 C T KIFC1 Silent p.L35L 0.18 TCGA-XX-A89A-01 6 36571292 36571292 C G SRSF3 3'UTR 0.27 TCGA-XX-A89A-01 6 46826670 46826670 T A GPR116 Silent p.L990L 0.26 TCGA-XX-A89A-01 6 47976554 47976554 G A PTCHD4 Silent p.L241L 0.19 TCGA-XX-A89A-01 6 90449970 90449970 C T MDN1 Missense_Mutation p.D1526N 0.12 probably_damaging(1) TCGA-XX-A89A-01 6 90605023 90605023 G A GJA10 Missense_Mutation p.R279K 0.31 tolerated(0.38) benign(0.005) TCGA-XX-A89A-01 7 100369550 100369550 G A ZAN Missense_Mutation p.D1778N 0.30 unknown(0) TCGA-XX-A89A-01 7 104681436 104681436 G C KMT2E Missense_Mutation p.E13Q 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-XX-A89A-01 7 1049776 1049776 C T C7orf50 Missense_Mutation p.E45K 0.25 tolerated_low_confidence(0.66) benign(0.001) TCGA-XX-A89A-01 7 106843942 106843942 G T COG5 3'UTR 0.19 TCGA-XX-A89A-01 7 106843949 106843949 G T COG5 3'UTR 0.20 TCGA-XX-A89A-01 7 112406069 112406069 T C TMEM168 3'UTR 0.08 TCGA-XX-A89A-01 7 128483349 128483349 G A FLNC Missense_Mutation p.E873K 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-XX-A89A-01 7 128640615 128640615 C G TNPO3 Silent p.L293L 0.24 TCGA-XX-A89A-01 7 128641216 128641216 C G TNPO3 Missense_Mutation p.E257Q 0.18 tolerated(0.07) probably_damaging(0.987) TCGA-XX-A89A-01 7 129821523 129821523 C G TMEM209 Missense_Mutation p.E354Q 0.38 deleterious(0) probably_damaging(0.956) TCGA-XX-A89A-01 7 156473638 156473638 G C LMBR1 3'UTR 0.26 TCGA-XX-A89A-01 7 17869646 17869646 C T SNX13 Missense_Mutation p.G541E 0.22 tolerated(0.08) benign(0.029) TCGA-XX-A89A-01 7 28449470 28449470 G A CREB5 5'Flank 0.09 TCGA-XX-A89A-01 7 65557588 65557588 C G ASL Missense_Mutation p.F396L 0.20 tolerated(0.69) benign(0.001) TCGA-XX-A89A-01 7 72277830 72277830 T A TYW1B Missense_Mutation p.R184S 0.25 tolerated(0.53) benign(0.009) TCGA-XX-A89A-01 7 87762078 87762078 G C ADAM22 Intron 0.23 TCGA-XX-A89A-01 7 97487691 97487691 C T ASNS Missense_Mutation p.A268T 0.09 deleterious(0) possibly_damaging(0.897) TCGA-XX-A89A-01 8 121344922 121344922 G A COL14A1 Missense_Mutation p.G1578E 0.13 deleterious(0) probably_damaging(1) TCGA-XX-A89A-01 8 128429050 128429050 G A POU5F1B Silent p.P313P 0.25 TCGA-XX-A89A-01 8 140631134 140631134 G C KCNK9 Missense_Mutation p.F164L 0.28 tolerated(0.57) benign(0.004) TCGA-XX-A89A-01 8 144590035 144590035 G C ZC3H3 Silent p.T532T 0.24 TCGA-XX-A89A-01 8 145138198 145138198 G A GPAA1 Silent p.K82K 0.16 TCGA-XX-A89A-01 8 30889718 30889718 C T PURG Missense_Mutation p.R194H 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-XX-A89A-01 8 38002780 38002780 G C STAR Missense_Mutation p.S235C 0.34 deleterious(0.03) benign(0.236) TCGA-XX-A89A-01 8 51465613 51465613 G C SNTG1 Missense_Mutation p.Q228H 0.31 tolerated(0.57) benign(0.401) TCGA-XX-A89A-01 8 77776408 77776408 T C ZFHX4 Silent p.H3486H 0.10 TCGA-XX-A89A-01 8 98943413 98943413 G C MATN2 Missense_Mutation p.K125N 0.27 tolerated(0.41) benign(0.148) TCGA-XX-A89A-01 9 117808848 117808848 C G TNC Missense_Mutation p.D1656H 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-XX-A89A-01 9 117808914 117808914 C A TNC Missense_Mutation p.D1634Y 0.29 tolerated(0.2) probably_damaging(0.988) TCGA-XX-A89A-01 9 124976629 124976629 G C LHX6 Missense_Mutation p.S239W 0.21 deleterious(0) probably_damaging(0.971) TCGA-XX-A89A-01 9 130829077 130829077 C T NAIF1 Missense_Mutation p.D102N 0.25 tolerated_low_confidence(0.1) benign(0.01) TCGA-XX-A89A-01 9 130829423 130829423 C G NAIF1 5'UTR 0.30 TCGA-XX-A89A-01 9 136233502 136233502 G A SURF4 Silent p.F95F 0.19 TCGA-XX-A89A-01 9 136897794 136897794 T A BRD3 3'UTR 0.24 TCGA-XX-A89A-01 9 138714722 138714722 C G CAMSAP1 Missense_Mutation p.L595F 0.31 deleterious(0) probably_damaging(0.996) TCGA-XX-A89A-01 9 34521802 34521802 C T ENHO 5'UTR 0.13 TCGA-XX-A89A-01 9 35090191 35090191 C G PIGO Missense_Mutation p.D981H 0.30 tolerated(0.05) benign(0.044) TCGA-XX-A89A-01 9 88573480 88573480 C G NAA35 Silent p.L84L 0.22 TCGA-XX-A89A-01 X 101139012 101139012 C T ZMAT1 Missense_Mutation p.E463K 0.23 tolerated(0.12) benign(0.06) TCGA-XX-A89A-01 X 103080283 103080283 C G RAB9B Missense_Mutation p.E144D 0.15 tolerated(0.18) benign(0.004) TCGA-XX-A89A-01 X 128724215 128724215 C T OCRL Silent p.L892L 0.24 TCGA-XX-A89A-01 X 140969338 140969338 T G MAGEC3 Missense_Mutation p.F222C 0.23 deleterious(0) probably_damaging(0.926) TCGA-XX-A89A-01 X 148797583 148797583 A G MAGEA11 Missense_Mutation p.Q146R 0.13 deleterious(0.05) benign(0.361) TCGA-XX-A89A-01 X 151138740 151138740 C T GABRE Missense_Mutation p.R64K 0.23 tolerated(0.89) benign(0) TCGA-XX-A89A-01 X 18690189 18690189 C G RS1 5'UTR 0.26 TCGA-XX-A89A-01 X 19008029 19008029 C T GPR64 3'UTR 0.27 TCGA-XX-A89A-01 X 30237856 30237856 C T MAGEB2 3'UTR 0.21 TCGA-XX-A89A-01 X 30326737 30326737 G C NR0B1 Silent p.L248L 0.26 TCGA-XX-A89A-01 X 30747755 30747755 G A GK 3'UTR 0.27 TCGA-XX-A89A-01 X 31139186 31139186 C T DMD 3'UTR 0.18 TCGA-XX-A89A-01 X 41094703 41094703 G A USP9X 3'UTR 0.26 TCGA-XX-A89A-01 X 49088226 49088226 G C CACNA1F Silent p.A63A 0.14 TCGA-XX-A89A-01 X 51234095 51234095 C G NUDT11 3'UTR 0.20 TCGA-XX-A89A-01 X 70774401 70774401 C G OGT Missense_Mutation p.I229M 0.13 tolerated(0.06) probably_damaging(0.994) TCGA-XX-A89A-01 X 71350813 71350813 G A RGAG4 Missense_Mutation p.S193F 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-XX-A89A-01 X 73956560 73956560 C G KIAA2022 3'UTR 0.15 TCGA-XX-A89A-01 X 77254073 77254073 C T ATP7A Nonsense_Mutation p.Q479* 0.33 TCGA-XX-A89A-01 X 78622742 78622742 C T ITM2A 5'UTR 0.13 TCGA-XX-A89A-01 X 83124890 83124890 G A CYLC1 Missense_Mutation p.R12K 0.22 tolerated(0.45) possibly_damaging(0.87) TCGA-XX-A89A-01 X 99891790 99891790 G T TSPAN6 5'UTR 0.20 TCGA-Z7-A8R5-01 10 50040645 50040645 G A WDFY4 Missense_Mutation p.R2185H 0.08 tolerated(0.08) benign(0.014) TCGA-Z7-A8R5-01 10 91483781 91483781 T A KIF20B Missense_Mutation p.L595I 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-Z7-A8R5-01 11 15992955 15992955 C A SOX6 3'UTR 0.56 TCGA-Z7-A8R5-01 12 115114116 115114117 - C TBX3 Splice_Site p.X367_splice 0.16 TCGA-Z7-A8R5-01 12 57966012 57966012 C T KIF5A Nonsense_Mutation p.Q511* 0.21 TCGA-Z7-A8R5-01 13 46549833 46549833 G T ZC3H13 Silent p.R685R 0.11 TCGA-Z7-A8R5-01 15 25425719 25425719 G A SNORD115-6 RNA 0.08 TCGA-Z7-A8R5-01 15 73925591 73925591 G A NPTN 5'UTR 0.06 TCGA-Z7-A8R5-01 15 79058973 79058973 G A ADAMTS7 Missense_Mutation p.R1094W 0.09 tolerated(0.23) benign(0) TCGA-Z7-A8R5-01 16 21817542 21817542 G A RRN3P1 RNA 0.03 TCGA-Z7-A8R5-01 16 68835618 68835618 C - CDH1 Frame_Shift_Del p.L71Sfs*12 0.15 TCGA-Z7-A8R5-01 16 75564846 75564846 C T CHST5 5'UTR 0.11 TCGA-Z7-A8R5-01 19 56600126 56600126 G A ZNF787 Nonsense_Mutation p.Q139* 0.07 TCGA-Z7-A8R5-01 19 5867539 5867539 G T FUT5 Missense_Mutation p.D66E 0.11 tolerated(1) benign(0.01) TCGA-Z7-A8R5-01 1 156255675 156255675 G A TMEM79 Missense_Mutation p.A220T 0.26 tolerated(0.29) benign(0.01) TCGA-Z7-A8R5-01 1 182856507 182856507 G A DHX9 Missense_Mutation p.G1251S 0.18 deleterious_low_confidence(0) unknown(0) TCGA-Z7-A8R5-01 1 200337907 200337907 G A LINC00862 RNA 0.29 TCGA-Z7-A8R5-01 1 26511652 26511652 C T CNKSR1 Missense_Mutation p.T428M 0.10 tolerated(0.11) benign(0.261) TCGA-Z7-A8R5-01 22 36702582 36702582 G A MYH9 Missense_Mutation p.R639W 0.12 probably_damaging(0.984) TCGA-Z7-A8R5-01 2 60686829 60686829 C G BCL11A 3'UTR 0.09 TCGA-Z7-A8R5-01 3 121400655 121400655 C A GOLGB1 Nonsense_Mutation p.E2918* 0.08 TCGA-Z7-A8R5-01 3 164907873 164907873 C T SLITRK3 Missense_Mutation p.R249H 0.21 tolerated(0.08) possibly_damaging(0.742) TCGA-Z7-A8R5-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.16 tolerated(0.11) possibly_damaging(0.529) TCGA-Z7-A8R5-01 5 132534963 132534963 C T FSTL4 Missense_Mutation p.A785T 0.08 tolerated(0.54) benign(0.066) TCGA-Z7-A8R5-01 5 140209596 140209596 G A PCDHA6 Silent p.A640A 0.19 TCGA-Z7-A8R5-01 5 140741197 140741197 C T PCDHGB2 Missense_Mutation p.R499W 0.16 tolerated(0.14) probably_damaging(0.932) TCGA-Z7-A8R5-01 5 140755539 140755539 G A PCDHGA6 Missense_Mutation p.R630H 0.11 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-Z7-A8R5-01 5 159841465 159841465 T C SLU7 Missense_Mutation p.H62R 0.19 deleterious(0) probably_damaging(0.999) TCGA-Z7-A8R5-01 5 169028379 169028379 G A SPDL1 Missense_Mutation p.G474R 0.15 tolerated(0.5) benign(0.006) TCGA-Z7-A8R5-01 6 6266887 6266887 G A F13A1 Missense_Mutation p.R159C 0.13 deleterious(0.01) probably_damaging(1) TCGA-Z7-A8R5-01 7 88962938 88962938 T A ZNF804B Missense_Mutation p.N214K 0.09 tolerated(0.05) possibly_damaging(0.798) TCGA-Z7-A8R5-01 7 95616403 95616403 G A DYNC1I1 Missense_Mutation p.R277H 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-Z7-A8R5-01 8 68112559 68112559 G A ARFGEF1 Intron 0.12 TCGA-Z7-A8R5-01 9 131008723 131008723 C T DNM1 Silent p.D574D 0.34 TCGA-Z7-A8R5-01 9 140732908 140732908 C T EHMT1 3'Flank 0.13 TCGA-Z7-A8R5-01 9 35744303 35744303 G A GBA2 Silent p.I186I 0.11 TCGA-Z7-A8R6-01 10 104173661 104173661 G A PSD Missense_Mutation p.A473V 0.46 tolerated(0.08) benign(0.001) TCGA-Z7-A8R6-01 10 12288268 12288268 C T CDC123 Nonsense_Mutation p.Q280* 0.31 TCGA-Z7-A8R6-01 10 127726901 127726901 C G ADAM12 Missense_Mutation p.R756P 0.21 deleterious(0.01) possibly_damaging(0.822) TCGA-Z7-A8R6-01 10 26581413 26581413 C T GAD2 Missense_Mutation p.A469V 0.40 tolerated(0.27) probably_damaging(0.989) TCGA-Z7-A8R6-01 10 27326960 27326962 TCT - ANKRD26 In_Frame_Del p.E800del 0.32 TCGA-Z7-A8R6-01 10 71265895 71265895 G T TSPAN15 Missense_Mutation p.D212Y 0.43 deleterious(0.01) possibly_damaging(0.467) TCGA-Z7-A8R6-01 10 93389671 93389671 A G PPP1R3C 3'UTR 0.54 TCGA-Z7-A8R6-01 10 98592096 98592096 G A LCOR 5'Flank 0.36 TCGA-Z7-A8R6-01 11 123513179 123513179 C T SCN3B Silent p.L140L 0.69 TCGA-Z7-A8R6-01 11 124294598 124294598 G A OR8B4 Missense_Mutation p.T57I 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-Z7-A8R6-01 11 125490668 125490680 TAAAGGACCTGGA - STT3A Frame_Shift_Del p.K695Ifs*14 0.15 TCGA-Z7-A8R6-01 11 17633810 17633810 C T OTOG Silent p.R2087R 0.23 TCGA-Z7-A8R6-01 11 69467852 69467852 C T CCND1 3'UTR 0.56 TCGA-Z7-A8R6-01 11 71943349 71943349 C T INPPL1 Missense_Mutation p.H561Y 0.58 deleterious(0) probably_damaging(0.997) TCGA-Z7-A8R6-01 11 75591082 75591082 C T UVRAG Nonsense_Mutation p.Q144* 0.50 TCGA-Z7-A8R6-01 12 110566842 110566842 G A IFT81 Silent p.L112L 0.42 TCGA-Z7-A8R6-01 12 115118861 115118863 GTC - TBX3 In_Frame_Del p.D160del 0.44 TCGA-Z7-A8R6-01 12 121603214 121603214 C T P2RX7 Silent p.I196I 0.35 TCGA-Z7-A8R6-01 12 393307 393307 A T KDM5A 3'UTR 0.05 TCGA-Z7-A8R6-01 12 47630128 47630128 G T PCED1B Nonsense_Mutation p.E428* 0.31 TCGA-Z7-A8R6-01 12 52756163 52756163 G A KRT85 Silent p.G390G 0.30 TCGA-Z7-A8R6-01 12 56232339 56232339 C T MMP19 Intron 0.60 TCGA-Z7-A8R6-01 12 57484947 57484947 G C NAB2 Silent p.G41G 0.44 TCGA-Z7-A8R6-01 12 72050830 72050830 C G ZFC3H1 Missense_Mutation p.E284Q 0.46 tolerated(0.24) possibly_damaging(0.793) TCGA-Z7-A8R6-01 12 89742414 89742414 C G DUSP6 3'UTR 0.45 TCGA-Z7-A8R6-01 13 37427775 37427775 G A SMAD9 Silent p.A347A 0.37 TCGA-Z7-A8R6-01 13 95363399 95363399 G A SOX21 3'UTR 0.63 TCGA-Z7-A8R6-01 14 105354103 105354103 G - CEP170B Frame_Shift_Del p.A1177Pfs*118 0.20 TCGA-Z7-A8R6-01 14 45501428 45501428 G A FAM179B Missense_Mutation p.E1221K 0.30 tolerated(0.07) benign(0.015) TCGA-Z7-A8R6-01 14 56233017 56233017 C T RP11-813I20.2 Intron 0.18 TCGA-Z7-A8R6-01 14 58895007 58895007 G A KIAA0586 Missense_Mutation p.E21K 0.27 deleterious_low_confidence(0.02) benign(0.009) TCGA-Z7-A8R6-01 15 48495269 48495269 G A CTXN2 3'UTR 0.28 TCGA-Z7-A8R6-01 16 23555885 23555885 C T EARS2 Silent p.Q145Q 0.28 TCGA-Z7-A8R6-01 16 90161047 90161047 C T TUBB8P7 Intron 0.65 TCGA-Z7-A8R6-01 17 33288560 33288560 G A ZNF830 5'UTR 0.35 TCGA-Z7-A8R6-01 17 44249582 44249582 C T KANSL1 5'UTR 0.38 TCGA-Z7-A8R6-01 17 56573371 56573371 C T MTMR4 Missense_Mutation p.R711Q 0.33 tolerated_low_confidence(0.75) benign(0) TCGA-Z7-A8R6-01 17 62290578 62290578 A C TEX2 Missense_Mutation p.L334V 0.32 tolerated(0.39) benign(0.023) TCGA-Z7-A8R6-01 17 66267275 66267275 G A SLC16A6 Silent p.F342F 0.54 TCGA-Z7-A8R6-01 17 7165210 7165210 C T CLDN7 Nonsense_Mutation p.W51* 0.63 TCGA-Z7-A8R6-01 17 73774213 73774213 A T H3F3B 3'UTR 0.09 TCGA-Z7-A8R6-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.88 deleterious(0) probably_damaging(0.985) TCGA-Z7-A8R6-01 18 347316 347316 G A COLEC12 Silent p.I102I 0.38 TCGA-Z7-A8R6-01 18 43490542 43490542 G A EPG5 Silent p.S1383S 0.11 TCGA-Z7-A8R6-01 19 17487821 17487821 G A PLVAP Missense_Mutation p.R93C 0.30 deleterious(0) probably_damaging(0.959) TCGA-Z7-A8R6-01 19 42852426 42852426 C A MEGF8 Intron 0.37 TCGA-Z7-A8R6-01 19 50166685 50166685 G A IRF3 Silent p.L84L 0.42 TCGA-Z7-A8R6-01 19 50369662 50369662 C A PNKP Silent p.V64V 0.35 TCGA-Z7-A8R6-01 19 52000152 52000152 G A SIGLEC12 Silent p.V527V 0.47 TCGA-Z7-A8R6-01 19 52001508 52001508 G A SIGLEC12 Missense_Mutation p.S390L 0.31 tolerated(0.76) benign(0.147) TCGA-Z7-A8R6-01 19 53652499 53652499 G A ZNF347 Missense_Mutation p.S46F 0.30 tolerated(0.12) probably_damaging(0.996) TCGA-Z7-A8R6-01 19 8563644 8563644 G A PRAM1 Missense_Mutation p.R350C 0.30 tolerated(0.2) benign(0.002) TCGA-Z7-A8R6-01 1 100214177 100214177 C T FRRS1 Missense_Mutation p.D50N 0.38 tolerated(0.64) benign(0.002) TCGA-Z7-A8R6-01 1 107600017 107600017 C T PRMT6 Missense_Mutation p.T227M 0.23 deleterious(0.01) possibly_damaging(0.891) TCGA-Z7-A8R6-01 1 109766621 109766622 - G SARS Frame_Shift_Ins p.N54Efs*24 0.22 TCGA-Z7-A8R6-01 1 145116598 145116598 C G SEC22B RNA 0.10 TCGA-Z7-A8R6-01 1 153907257 153907257 C T DENND4B Missense_Mutation p.E918K 0.20 tolerated(0.19) benign(0.002) TCGA-Z7-A8R6-01 1 185947054 185947054 C T HMCN1 Missense_Mutation p.S836L 0.28 probably_damaging(0.985) TCGA-Z7-A8R6-01 1 21050182 21050182 G A SH2D5 Missense_Mutation p.S282L 0.35 tolerated(0.69) benign(0.002) TCGA-Z7-A8R6-01 1 224346160 224346160 G A FBXO28 3'UTR 0.36 TCGA-Z7-A8R6-01 1 228526012 228526012 G A OBSCN Missense_Mutation p.A6632T 0.27 benign(0.019) TCGA-Z7-A8R6-01 1 231114978 231114978 G C ARV1 Missense_Mutation p.E43Q 0.31 tolerated(0.08) possibly_damaging(0.896) TCGA-Z7-A8R6-01 1 28233719 28233719 G A RPA2 Silent p.F64F 0.38 TCGA-Z7-A8R6-01 1 28233720 28233720 A T RPA2 Missense_Mutation p.F64Y 0.38 deleterious(0) probably_damaging(0.991) TCGA-Z7-A8R6-01 1 35228214 35228214 C T GJB4 3'UTR 0.53 TCGA-Z7-A8R6-01 1 43917003 43917003 C T SZT2 3'UTR 0.75 TCGA-Z7-A8R6-01 1 47143964 47143964 C G EFCAB14 3'UTR 0.36 TCGA-Z7-A8R6-01 1 89477682 89477682 G C GBP3 Missense_Mutation p.I299M 0.38 deleterious(0.02) benign(0.054) TCGA-Z7-A8R6-01 21 47746339 47746339 G C PCNT Missense_Mutation p.E35Q 0.29 possibly_damaging(0.727) TCGA-Z7-A8R6-01 2 10263513 10263513 G A RRM2 Splice_Site p.X119_splice 0.38 TCGA-Z7-A8R6-01 2 113999133 113999133 C T PAX8 Missense_Mutation p.E258K 0.22 deleterious(0.02) benign(0.023) TCGA-Z7-A8R6-01 2 11919678 11919678 T C LPIN1 Silent p.S337S 0.30 TCGA-Z7-A8R6-01 2 131103843 131103843 G A IMP4 Silent p.L253L 0.45 TCGA-Z7-A8R6-01 2 133403063 133403063 G A GPR39 Missense_Mutation p.E416K 0.46 deleterious(0.01) benign(0.003) TCGA-Z7-A8R6-01 2 25387597 25387597 G A POMC Silent p.A15A 0.31 TCGA-Z7-A8R6-01 2 29917782 29917782 C T ALK Missense_Mutation p.E296K 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-Z7-A8R6-01 2 49216121 49216121 C G FSHR Silent p.V173V 0.34 TCGA-Z7-A8R6-01 2 65539788 65539788 C G SPRED2 3'UTR 0.53 TCGA-Z7-A8R6-01 3 170607448 170607448 C T EIF5A2 3'UTR 0.41 TCGA-Z7-A8R6-01 3 35725650 35725650 C T ARPP21 Intron 0.27 TCGA-Z7-A8R6-01 3 38542981 38542981 C G EXOG Nonsense_Mutation p.S150* 0.40 TCGA-Z7-A8R6-01 3 48719078 48719078 G A NCKIPSD Missense_Mutation p.P245L 0.31 deleterious(0) probably_damaging(0.998) TCGA-Z7-A8R6-01 3 49836150 49836150 C G CDHR4 Intron 0.37 TCGA-Z7-A8R6-01 4 110661939 110661939 G C CFI 3'UTR 0.42 TCGA-Z7-A8R6-01 4 184570699 184570699 G C RWDD4 Nonsense_Mutation p.S129* 0.38 TCGA-Z7-A8R6-01 4 3517920 3517920 C T LRPAP1 Missense_Mutation p.E253K 0.31 tolerated(0.62) benign(0.085) TCGA-Z7-A8R6-01 4 66197760 66197760 C T EPHA5 Missense_Mutation p.G980D 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-Z7-A8R6-01 4 83778881 83778881 G A SEC31A Missense_Mutation p.P555S 0.38 deleterious(0.03) benign(0.002) TCGA-Z7-A8R6-01 5 140772993 140772993 G T PCDHGA8 Nonsense_Mutation p.E205* 0.18 TCGA-Z7-A8R6-01 6 1313323 1313323 C T FOXQ1 Silent p.I128I 0.62 TCGA-Z7-A8R6-01 6 146480606 146480606 C T GRM1 Missense_Mutation p.R275C 0.38 deleterious(0.01) possibly_damaging(0.773) TCGA-Z7-A8R6-01 6 146755112 146755112 C T GRM1 Missense_Mutation p.T922M 0.14 tolerated(0.11) benign(0.007) TCGA-Z7-A8R6-01 7 150035076 150035076 G A LRRC61 3'UTR 0.39 TCGA-Z7-A8R6-01 7 32615572 32615572 G C AVL9 Missense_Mutation p.E526Q 0.22 tolerated(0.05) possibly_damaging(0.653) TCGA-Z7-A8R6-01 7 73114746 73114746 G C STX1A Missense_Mutation p.I286M 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.62) TCGA-Z7-A8R6-01 7 81714172 81714172 C T CACNA2D1 Missense_Mutation p.E191K 0.39 tolerated(0.58) possibly_damaging(0.631) TCGA-Z7-A8R6-01 7 81714175 81714175 C T CACNA2D1 Missense_Mutation p.D190N 0.37 deleterious(0.01) possibly_damaging(0.763) TCGA-Z7-A8R6-01 8 74891108 74891108 G C TMEM70 Intron 0.65 TCGA-Z7-A8R6-01 9 100128888 100128888 G C CCDC180 Missense_Mutation p.M1409I 0.30 tolerated(0.07) benign(0.043) TCGA-Z7-A8R6-01 9 114484816 114484816 G A C9orf84 Silent p.I604I 0.27 TCGA-Z7-A8R6-01 9 125748594 125748594 G A RABGAP1 Silent p.R162R 0.23 TCGA-Z7-A8R6-01 9 131670976 131670976 G A LRRC8A Nonsense_Mutation p.W511* 0.59 TCGA-Z7-A8R6-01 9 138380117 138380117 T C PPP1R26 3'UTR 0.53 TCGA-Z7-A8R6-01 9 138660705 138660705 G A KCNT1 Missense_Mutation p.V478M 0.30 deleterious(0) probably_damaging(0.97) TCGA-Z7-A8R6-01 9 139732034 139732034 C T RABL6 Missense_Mutation p.S350L 0.34 tolerated(0.14) benign(0.002) TCGA-Z7-A8R6-01 9 35115 35115 G T FAM138C RNA 0.37 TCGA-Z7-A8R6-01 9 70993158 70993158 C G PGM5 Missense_Mutation p.P102R 0.59 deleterious(0) probably_damaging(1) TCGA-Z7-A8R6-01 9 91993093 91993093 A - SEMA4D 3'UTR 0.09 TCGA-Z7-A8R6-01 9 95396703 95396703 C T IPPK Missense_Mutation p.E379K 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-Z7-A8R6-01 X 123217344 123217344 C T STAG2 Missense_Mutation p.L1000F 0.39 deleterious(0) probably_damaging(1) TCGA-Z7-A8R6-01 X 30671631 30671631 G A GK 5'UTR 0.36 TCGA-Z7-A8R6-01 X 51151398 51151398 C G CXorf67 3'UTR 0.32 TCGA-Z7-A8R6-01 X 54014379 54014379 T A PHF8 Splice_Site p.X613_splice 0.07